#                                                                           --- full sequence ---- --- best 1 domain ---- --- domain number estimation ----
# target name        accession  query name                       accession    E-value  score  bias   E-value  score  bias   exp reg clu  ov env dom rep inc description of target
#------------------- ----------             -------------------- ---------- --------- ------ ----- --------- ------ -----   --- --- --- --- --- --- --- --- ---------------------
Cdc6_C	PF09079.11	gi|408402625|ref|YP_006860608.1|	-	8e-19	67.4	0.3	2.1e-18	66.0	0.3	1.8	1	0	0	1	1	1	1	CDC6,	C	terminal	winged	helix	domain
AAA	PF00004.29	gi|408402625|ref|YP_006860608.1|	-	4.8e-14	52.9	0.2	1.7e-13	51.1	0.2	2.0	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_22	PF13401.6	gi|408402625|ref|YP_006860608.1|	-	8.4e-14	52.0	0.1	5.1e-13	49.5	0.0	2.1	2	0	0	2	2	2	1	AAA	domain
AAA_16	PF13191.6	gi|408402625|ref|YP_006860608.1|	-	3.9e-12	46.9	0.2	4.5e-11	43.4	0.0	2.6	2	1	0	2	2	2	1	AAA	ATPase	domain
TniB	PF05621.11	gi|408402625|ref|YP_006860608.1|	-	5.6e-08	32.4	0.0	1e-07	31.5	0.0	1.4	1	0	0	1	1	1	1	Bacterial	TniB	protein
ATPase_2	PF01637.18	gi|408402625|ref|YP_006860608.1|	-	5.3e-06	26.5	0.4	1.2e-05	25.3	0.4	1.7	1	0	0	1	1	1	1	ATPase	domain	predominantly	from	Archaea
AAA_19	PF13245.6	gi|408402625|ref|YP_006860608.1|	-	7.5e-06	26.3	0.0	1.8e-05	25.1	0.0	1.6	1	0	0	1	1	1	1	AAA	domain
NB-ARC	PF00931.22	gi|408402625|ref|YP_006860608.1|	-	2.9e-05	23.4	0.2	5.2e-05	22.5	0.2	1.4	1	0	0	1	1	1	1	NB-ARC	domain
Zeta_toxin	PF06414.12	gi|408402625|ref|YP_006860608.1|	-	5.9e-05	22.4	0.1	0.00057	19.2	0.1	2.2	1	1	0	1	1	1	1	Zeta	toxin
DUF815	PF05673.13	gi|408402625|ref|YP_006860608.1|	-	7e-05	22.1	0.3	0.0005	19.3	0.0	2.2	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF815)
NACHT	PF05729.12	gi|408402625|ref|YP_006860608.1|	-	0.00036	20.5	0.1	0.0012	18.8	0.1	1.9	1	1	0	1	1	1	1	NACHT	domain
KAP_NTPase	PF07693.14	gi|408402625|ref|YP_006860608.1|	-	0.0011	18.2	0.9	0.23	10.6	0.0	2.3	1	1	1	2	2	2	2	KAP	family	P-loop	domain
AAA_5	PF07728.14	gi|408402625|ref|YP_006860608.1|	-	0.002	18.1	0.2	0.019	14.9	0.0	2.5	2	1	0	2	2	2	1	AAA	domain	(dynein-related	subfamily)
Mg_chelatase	PF01078.21	gi|408402625|ref|YP_006860608.1|	-	0.0028	17.1	0.0	0.0069	15.8	0.0	1.6	1	0	0	1	1	1	1	Magnesium	chelatase,	subunit	ChlI
AAA_7	PF12775.7	gi|408402625|ref|YP_006860608.1|	-	0.0033	17.0	0.0	0.0069	15.9	0.0	1.5	1	0	0	1	1	1	1	P-loop	containing	dynein	motor	region
ResIII	PF04851.15	gi|408402625|ref|YP_006860608.1|	-	0.0042	17.1	0.3	0.032	14.2	0.2	2.3	1	1	1	2	2	2	1	Type	III	restriction	enzyme,	res	subunit
DUF2075	PF09848.9	gi|408402625|ref|YP_006860608.1|	-	0.0048	16.2	0.1	0.0069	15.7	0.1	1.3	1	0	0	1	1	1	1	Uncharacterized	conserved	protein	(DUF2075)
AAA_assoc_2	PF16193.5	gi|408402625|ref|YP_006860608.1|	-	0.0051	17.1	1.1	0.021	15.2	0.5	2.4	2	0	0	2	2	1	1	AAA	C-terminal	domain
AAA_24	PF13479.6	gi|408402625|ref|YP_006860608.1|	-	0.0075	16.0	0.5	0.026	14.3	0.5	1.9	1	1	0	1	1	1	1	AAA	domain
AAA_2	PF07724.14	gi|408402625|ref|YP_006860608.1|	-	0.0093	16.1	0.1	0.022	14.9	0.1	1.5	1	0	0	1	1	1	1	AAA	domain	(Cdc48	subfamily)
RNA_helicase	PF00910.22	gi|408402625|ref|YP_006860608.1|	-	0.011	16.1	0.0	0.026	14.9	0.0	1.8	1	1	0	1	1	1	0	RNA	helicase
Sigma54_activat	PF00158.26	gi|408402625|ref|YP_006860608.1|	-	0.012	15.3	0.0	0.037	13.7	0.0	1.8	2	0	0	2	2	1	0	Sigma-54	interaction	domain
AAA_30	PF13604.6	gi|408402625|ref|YP_006860608.1|	-	0.013	15.3	0.0	0.024	14.4	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
AAA_32	PF13654.6	gi|408402625|ref|YP_006860608.1|	-	0.013	14.3	0.3	2.4	6.8	0.0	2.2	2	0	0	2	2	2	0	AAA	domain
DnaB_C	PF03796.15	gi|408402625|ref|YP_006860608.1|	-	0.016	14.5	0.1	0.053	12.8	0.0	1.9	2	0	0	2	2	2	0	DnaB-like	helicase	C	terminal	domain
AAA_18	PF13238.6	gi|408402625|ref|YP_006860608.1|	-	0.017	15.7	0.0	0.047	14.2	0.0	1.9	1	0	0	1	1	1	0	AAA	domain
ATPase	PF06745.13	gi|408402625|ref|YP_006860608.1|	-	0.025	13.9	1.2	0.41	9.9	1.2	2.4	1	1	0	1	1	1	0	KaiC
RuvB_N	PF05496.12	gi|408402625|ref|YP_006860608.1|	-	0.027	14.2	0.1	0.76	9.5	0.0	2.4	2	0	0	2	2	2	0	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
NTPase_1	PF03266.15	gi|408402625|ref|YP_006860608.1|	-	0.042	13.8	0.7	0.16	11.9	0.7	1.9	1	1	0	1	1	1	0	NTPase
AAA_33	PF13671.6	gi|408402625|ref|YP_006860608.1|	-	0.044	13.9	0.8	0.25	11.5	0.8	2.4	1	1	0	1	1	1	0	AAA	domain
IstB_IS21	PF01695.17	gi|408402625|ref|YP_006860608.1|	-	0.082	12.6	0.1	0.48	10.1	0.0	2.1	1	1	0	2	2	2	0	IstB-like	ATP	binding	protein
TsaE	PF02367.17	gi|408402625|ref|YP_006860608.1|	-	0.11	12.5	0.0	0.22	11.5	0.0	1.4	1	0	0	1	1	1	0	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
ABC_tran	PF00005.27	gi|408402625|ref|YP_006860608.1|	-	0.13	12.8	0.2	0.69	10.4	0.1	2.2	2	2	0	2	2	2	0	ABC	transporter
DNA_pol_E_B	PF04042.16	gi|408402626|ref|YP_006860609.1|	-	5.5e-18	65.1	0.0	9.1e-18	64.4	0.0	1.4	1	0	0	1	1	1	1	DNA	polymerase	alpha/epsilon	subunit	B
Metallophos_2	PF12850.7	gi|408402626|ref|YP_006860609.1|	-	3.8e-09	37.0	0.2	1e-08	35.6	0.2	1.6	1	1	0	1	1	1	1	Calcineurin-like	phosphoesterase	superfamily	domain
Metallophos	PF00149.28	gi|408402626|ref|YP_006860609.1|	-	4.8e-08	33.8	0.1	7.7e-08	33.1	0.1	1.3	1	0	0	1	1	1	1	Calcineurin-like	phosphoesterase
tRNA_anti-codon	PF01336.25	gi|408402626|ref|YP_006860609.1|	-	0.027	14.5	0.0	0.051	13.6	0.0	1.5	1	0	0	1	1	1	0	OB-fold	nucleic	acid	binding	domain
Apolipoprotein	PF01442.18	gi|408402627|ref|YP_006860610.1|	-	0.017	15.0	11.9	0.58	10.0	2.4	2.5	2	0	0	2	2	2	0	Apolipoprotein	A1/A4/E	domain
UPF0086	PF01868.16	gi|408402627|ref|YP_006860610.1|	-	0.027	14.4	0.9	5.9	6.9	0.0	2.9	3	0	0	3	3	3	0	Domain	of	unknown	function	UPF0086
Malt_amylase_C	PF16657.5	gi|408402627|ref|YP_006860610.1|	-	0.027	14.6	0.0	30	4.8	0.0	3.4	3	0	0	3	3	3	0	Maltogenic	Amylase,	C-terminal	domain
DUF769	PF05590.11	gi|408402627|ref|YP_006860610.1|	-	0.047	13.1	0.7	0.2	11.1	0.4	2.1	2	0	0	2	2	2	0	Xylella	fastidiosa	protein	of	unknown	function	(DUF769)
Peptidase_S26	PF10502.9	gi|408402627|ref|YP_006860610.1|	-	0.052	13.3	0.1	0.11	12.3	0.1	1.6	1	0	0	1	1	1	0	Signal	peptidase,	peptidase	S26
COX15-CtaA	PF02628.15	gi|408402628|ref|YP_006860611.1|	-	5.3e-15	55.3	14.9	9e-09	34.8	11.0	2.0	1	1	1	2	2	2	2	Cytochrome	oxidase	assembly	protein
MARVEL	PF01284.23	gi|408402628|ref|YP_006860611.1|	-	0.023	14.7	8.7	0.13	12.3	0.0	2.1	2	0	0	2	2	2	0	Membrane-associating	domain
Rieske_2	PF13806.6	gi|408402628|ref|YP_006860611.1|	-	0.1	12.5	0.0	0.14	12.1	0.0	1.3	1	0	0	1	1	1	0	Rieske-like	[2Fe-2S]	domain
7TMR-DISM_7TM	PF07695.11	gi|408402628|ref|YP_006860611.1|	-	0.14	12.1	11.9	0.2	11.5	11.9	1.3	1	1	0	1	1	1	0	7TM	diverse	intracellular	signalling
Calcyon	PF06387.11	gi|408402628|ref|YP_006860611.1|	-	0.19	11.7	0.5	0.27	11.2	0.2	1.8	1	1	0	1	1	1	0	D1	dopamine	receptor-interacting	protein	(calcyon)
DUF2070	PF09843.9	gi|408402628|ref|YP_006860611.1|	-	1	7.6	8.2	1.2	7.3	8.2	1.0	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2070)
Response_reg	PF00072.24	gi|408402629|ref|YP_006860612.1|	-	3.1e-15	56.3	0.0	3.4e-15	56.2	0.0	1.0	1	0	0	1	1	1	1	Response	regulator	receiver	domain
Guanylate_cyc	PF00211.20	gi|408402631|ref|YP_006860614.1|	-	1.2e-17	64.1	0.0	2.5e-17	63.1	0.0	1.5	1	0	0	1	1	1	1	Adenylate	and	Guanylate	cyclase	catalytic	domain
MgtE_N	PF03448.17	gi|408402631|ref|YP_006860614.1|	-	0.084	13.5	0.9	0.44	11.2	0.1	2.1	1	1	0	2	2	2	0	MgtE	intracellular	N	domain
HTH_7	PF02796.15	gi|408402631|ref|YP_006860614.1|	-	0.17	12.0	0.1	0.61	10.2	0.0	2.0	3	0	0	3	3	3	0	Helix-turn-helix	domain	of	resolvase
TFIIE_alpha	PF02002.17	gi|408402632|ref|YP_006860615.1|	-	1.4e-18	66.7	1.3	1.4e-18	66.7	1.3	1.9	2	0	0	2	2	2	1	TFIIE	alpha	subunit
zf_CopZ	PF18423.1	gi|408402632|ref|YP_006860615.1|	-	0.0054	16.7	3.2	1.1	9.2	0.4	2.3	1	1	1	2	2	2	2	Zinc	binding	domain
HTH_9	PF08221.11	gi|408402632|ref|YP_006860615.1|	-	0.079	13.1	0.0	0.16	12.1	0.0	1.4	1	0	0	1	1	1	0	RNA	polymerase	III	subunit	RPC82	helix-turn-helix	domain
HTH_15	PF12324.8	gi|408402632|ref|YP_006860615.1|	-	0.15	12.0	0.0	0.54	10.2	0.0	1.9	2	0	0	2	2	2	0	Helix-turn-helix	domain	of	alkylmercury	lyase
UDG	PF03167.19	gi|408402634|ref|YP_006860617.1|	-	1.3e-32	113.0	0.0	1.7e-32	112.6	0.0	1.1	1	0	0	1	1	1	1	Uracil	DNA	glycosylase	superfamily
HTH_3	PF01381.22	gi|408402635|ref|YP_006860618.1|	-	3.6e-10	39.8	0.0	5.6e-10	39.1	0.0	1.4	1	0	0	1	1	1	1	Helix-turn-helix
HTH_31	PF13560.6	gi|408402635|ref|YP_006860618.1|	-	1e-06	29.0	0.0	1.4e-06	28.6	0.0	1.2	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_19	PF12844.7	gi|408402635|ref|YP_006860618.1|	-	8.4e-06	25.7	0.0	2.1e-05	24.5	0.0	1.6	1	1	1	2	2	2	1	Helix-turn-helix	domain
DUF3606	PF12244.8	gi|408402635|ref|YP_006860618.1|	-	0.016	15.1	0.0	0.028	14.3	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3606)
MerR_1	PF13411.6	gi|408402635|ref|YP_006860618.1|	-	0.044	13.9	0.0	2.2	8.4	0.0	2.2	1	1	1	2	2	2	0	MerR	HTH	family	regulatory	protein
HTH_37	PF13744.6	gi|408402635|ref|YP_006860618.1|	-	0.095	12.7	0.0	0.13	12.2	0.0	1.3	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_26	PF13443.6	gi|408402635|ref|YP_006860618.1|	-	0.12	12.9	0.0	0.18	12.2	0.0	1.3	1	0	0	1	1	1	0	Cro/C1-type	HTH	DNA-binding	domain
Tautomerase	PF01361.21	gi|408402636|ref|YP_006860619.1|	-	5.1e-12	45.5	0.0	5.3e-12	45.5	0.0	1.0	1	0	0	1	1	1	1	Tautomerase	enzyme
Tautomerase_2	PF14552.6	gi|408402636|ref|YP_006860619.1|	-	1.6e-07	31.3	0.0	1.9e-07	31.1	0.0	1.0	1	0	0	1	1	1	1	Tautomerase	enzyme
Ketoacyl-synt_2	PF13723.6	gi|408402636|ref|YP_006860619.1|	-	0.036	13.7	0.0	0.042	13.5	0.0	1.0	1	0	0	1	1	1	0	Beta-ketoacyl	synthase,	N-terminal	domain
Tautomerase_3	PF14832.6	gi|408402636|ref|YP_006860619.1|	-	0.074	13.3	0.0	0.083	13.1	0.0	1.0	1	0	0	1	1	1	0	Putative	oxalocrotonate	tautomerase	enzyme
CN_hydrolase	PF00795.22	gi|408402638|ref|YP_006860621.1|	-	6.1e-58	196.2	0.1	6.8e-58	196.0	0.1	1.0	1	0	0	1	1	1	1	Carbon-nitrogen	hydrolase
Topoisom_bac	PF01131.20	gi|408402639|ref|YP_006860622.1|	-	9.6e-108	360.8	0.0	1.3e-107	360.4	0.0	1.1	1	0	0	1	1	1	1	DNA	topoisomerase
Toprim	PF01751.22	gi|408402639|ref|YP_006860622.1|	-	9.8e-15	54.7	0.0	2.1e-14	53.6	0.0	1.6	1	0	0	1	1	1	1	Toprim	domain
zf-C4_Topoisom	PF01396.19	gi|408402639|ref|YP_006860622.1|	-	0.00016	21.4	7.2	0.0011	18.7	3.4	2.4	2	0	0	2	2	2	1	Topoisomerase	DNA	binding	C4	zinc	finger
Auto_anti-p27	PF06677.12	gi|408402639|ref|YP_006860622.1|	-	0.13	12.5	1.2	5.1	7.3	0.0	2.5	2	0	0	2	2	2	0	Sjogren's	syndrome/scleroderma	autoantigen	1	(Autoantigen	p27)
Rubredoxin_2	PF18073.1	gi|408402639|ref|YP_006860622.1|	-	0.21	11.3	1.3	1.4	8.7	0.1	2.4	2	0	0	2	2	2	0	Rubredoxin	metal	binding	domain
zf-ribbon_3	PF13248.6	gi|408402639|ref|YP_006860622.1|	-	2.5	7.7	5.2	3.1	7.3	0.6	2.5	2	0	0	2	2	2	0	zinc-ribbon	domain
PADR1	PF08063.12	gi|408402639|ref|YP_006860622.1|	-	5.2	6.9	5.9	3.1	7.7	0.3	2.9	3	0	0	3	3	3	0	PADR1	(NUC008)	domain
Phycobilisome	PF00502.19	gi|408402640|ref|YP_006860623.1|	-	0.17	11.8	0.0	0.2	11.6	0.0	1.0	1	0	0	1	1	1	0	Phycobilisome	protein
DUF1456	PF07308.13	gi|408402641|ref|YP_006860624.1|	-	0.0013	19.0	0.2	0.003	17.9	0.1	1.6	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF1456)
TrmB	PF01978.19	gi|408402641|ref|YP_006860624.1|	-	0.014	15.3	0.3	0.034	14.0	0.2	1.8	1	1	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
Thiolase_N	PF00108.23	gi|408402642|ref|YP_006860625.1|	-	7.6e-24	84.5	0.1	2.3e-23	82.9	0.1	1.8	2	1	0	2	2	2	1	Thiolase,	N-terminal	domain
Thiolase_C	PF02803.18	gi|408402642|ref|YP_006860625.1|	-	2.8e-12	46.4	0.9	3.5e-08	33.1	0.0	3.5	2	2	1	3	3	3	2	Thiolase,	C-terminal	domain
ketoacyl-synt	PF00109.26	gi|408402642|ref|YP_006860625.1|	-	4.7e-06	26.4	1.5	0.014	15.0	0.9	2.7	2	1	1	3	3	3	2	Beta-ketoacyl	synthase,	N-terminal	domain
Ketoacyl-synt_C	PF02801.22	gi|408402642|ref|YP_006860625.1|	-	0.004	17.2	0.7	0.52	10.3	0.0	3.3	3	0	0	3	3	3	1	Beta-ketoacyl	synthase,	C-terminal	domain
OB_aCoA_assoc	PF01796.17	gi|408402643|ref|YP_006860626.1|	-	1.2e-07	31.6	0.4	1.6e-07	31.2	0.4	1.2	1	0	0	1	1	1	1	DUF35	OB-fold	domain,	acyl-CoA-associated
zinc_ribbon_2	PF13240.6	gi|408402643|ref|YP_006860626.1|	-	0.00059	19.5	1.0	0.00093	18.8	1.0	1.3	1	0	0	1	1	1	1	zinc-ribbon	domain
DUF35_N	PF12172.8	gi|408402643|ref|YP_006860626.1|	-	0.0063	16.4	0.0	0.012	15.4	0.0	1.4	1	0	0	1	1	1	1	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
DZR	PF12773.7	gi|408402643|ref|YP_006860626.1|	-	0.023	14.7	0.5	0.031	14.3	0.5	1.2	1	0	0	1	1	1	0	Double	zinc	ribbon
zinc_ribbon_15	PF17032.5	gi|408402643|ref|YP_006860626.1|	-	0.039	14.7	0.9	0.053	14.3	0.9	1.2	1	0	0	1	1	1	0	zinc-ribbon	family
zinc_ribbon_13	PF09855.9	gi|408402643|ref|YP_006860626.1|	-	0.074	13.2	0.9	9.1	6.5	0.1	2.4	2	0	0	2	2	2	0	Nucleic-acid-binding	protein	containing	Zn-ribbon	domain	(DUF2082)
zinc_ribbon_5	PF13719.6	gi|408402643|ref|YP_006860626.1|	-	0.96	9.3	7.7	17	5.2	0.0	3.4	4	0	0	4	4	4	0	zinc-ribbon	domain
SelR	PF01641.18	gi|408402644|ref|YP_006860627.1|	-	0.046	13.8	0.8	0.052	13.6	0.8	1.1	1	0	0	1	1	1	0	SelR	domain
zf-ribbon_3	PF13248.6	gi|408402645|ref|YP_006860628.1|	-	0.00025	20.4	2.4	0.088	12.2	0.2	2.1	2	0	0	2	2	2	2	zinc-ribbon	domain
TF_Zn_Ribbon	PF08271.12	gi|408402645|ref|YP_006860628.1|	-	0.00066	19.1	4.4	0.072	12.6	1.0	2.1	1	1	1	2	2	2	2	TFIIB	zinc-binding
DZR	PF12773.7	gi|408402645|ref|YP_006860628.1|	-	0.00072	19.5	0.1	0.001	19.1	0.1	1.2	1	0	0	1	1	1	1	Double	zinc	ribbon
Prok-RING_1	PF14446.6	gi|408402645|ref|YP_006860628.1|	-	0.0011	18.9	0.4	0.23	11.4	0.0	2.1	2	0	0	2	2	2	1	Prokaryotic	RING	finger	family	1
zinc_ribbon_2	PF13240.6	gi|408402645|ref|YP_006860628.1|	-	0.0019	17.9	0.9	0.34	10.7	0.1	2.2	2	0	0	2	2	2	1	zinc-ribbon	domain
zf-RRN7	PF11781.8	gi|408402645|ref|YP_006860628.1|	-	0.0021	17.7	1.8	0.51	10.1	0.2	2.1	2	0	0	2	2	2	2	Zinc-finger	of	RNA-polymerase	I-specific	TFIIB,	Rrn7
zf-ACC	PF17848.1	gi|408402645|ref|YP_006860628.1|	-	0.0039	17.2	1.0	0.32	11.1	0.1	2.2	2	0	0	2	2	2	1	Acetyl-coA	carboxylase	zinc	finger	domain
zf-NADH-PPase	PF09297.11	gi|408402645|ref|YP_006860628.1|	-	0.0042	16.7	2.0	0.74	9.5	0.1	2.2	2	0	0	2	2	2	2	NADH	pyrophosphatase	zinc	ribbon	domain
Zn-ribbon_8	PF09723.10	gi|408402645|ref|YP_006860628.1|	-	0.0051	16.9	0.6	0.016	15.3	0.6	1.7	1	1	0	1	1	1	1	Zinc	ribbon	domain
Rad50_zn_hook	PF04423.14	gi|408402645|ref|YP_006860628.1|	-	0.0087	15.9	0.1	0.013	15.3	0.1	1.4	1	1	0	1	1	1	1	Rad50	zinc	hook	motif
Rtf2	PF04641.12	gi|408402645|ref|YP_006860628.1|	-	0.011	15.1	0.5	0.011	15.1	0.5	1.0	1	0	0	1	1	1	0	Rtf2	RING-finger
ADK_lid	PF05191.14	gi|408402645|ref|YP_006860628.1|	-	0.013	15.5	0.4	0.019	14.9	0.4	1.3	1	0	0	1	1	1	0	Adenylate	kinase,	active	site	lid
Zn_ribbon_recom	PF13408.6	gi|408402645|ref|YP_006860628.1|	-	0.013	16.0	0.4	0.74	10.4	0.1	2.1	2	0	0	2	2	2	0	Recombinase	zinc	beta	ribbon	domain
zinc_ribbon_5	PF13719.6	gi|408402645|ref|YP_006860628.1|	-	0.049	13.4	1.1	1.2	9.0	0.3	2.3	2	0	0	2	2	2	0	zinc-ribbon	domain
zinc_ribbon_15	PF17032.5	gi|408402645|ref|YP_006860628.1|	-	0.049	14.4	0.1	0.059	14.1	0.1	1.1	1	0	0	1	1	1	0	zinc-ribbon	family
DNA_RNApol_7kD	PF03604.13	gi|408402645|ref|YP_006860628.1|	-	0.053	13.2	1.3	1.6	8.5	0.2	2.4	2	0	0	2	2	2	0	DNA	directed	RNA	polymerase,	7	kDa	subunit
zf-C2HC5	PF06221.13	gi|408402645|ref|YP_006860628.1|	-	0.057	13.4	0.5	0.12	12.3	0.5	1.6	1	1	0	1	1	1	0	Putative	zinc	finger	motif,	C2HC5-type
OrfB_Zn_ribbon	PF07282.11	gi|408402645|ref|YP_006860628.1|	-	0.085	12.8	0.5	0.42	10.6	0.6	1.8	1	1	1	2	2	2	0	Putative	transposase	DNA-binding	domain
Nudix_N_2	PF14803.6	gi|408402645|ref|YP_006860628.1|	-	0.1	12.5	4.9	1.2	9.1	0.7	2.2	2	0	0	2	2	2	0	Nudix	N-terminal
Ribosomal_S27	PF01599.19	gi|408402645|ref|YP_006860628.1|	-	0.11	12.7	2.0	4.6	7.5	0.0	2.2	2	0	0	2	2	2	0	Ribosomal	protein	S27a
DUF35_N	PF12172.8	gi|408402645|ref|YP_006860628.1|	-	0.14	12.1	1.8	10	6.1	0.1	2.1	2	0	0	2	2	2	0	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
DNA_ligase_ZBD	PF03119.16	gi|408402645|ref|YP_006860628.1|	-	0.16	12.0	0.6	0.16	12.0	0.6	2.3	2	1	0	2	2	2	0	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
zf_CopZ	PF18423.1	gi|408402645|ref|YP_006860628.1|	-	0.23	11.4	2.3	5.5	7.0	0.1	2.1	1	1	1	2	2	2	0	Zinc	binding	domain
Zn_Tnp_IS1595	PF12760.7	gi|408402645|ref|YP_006860628.1|	-	0.47	10.5	3.1	7.4	6.6	0.3	2.1	1	1	1	2	2	2	0	Transposase	zinc-ribbon	domain
Snf7	PF03357.21	gi|408402647|ref|YP_006860630.1|	-	2.6e-05	23.9	0.5	7.5e-05	22.4	0.5	1.7	1	1	0	1	1	1	1	Snf7
Ppx-GppA	PF02541.16	gi|408402647|ref|YP_006860630.1|	-	0.0018	17.8	0.8	0.0032	16.9	0.8	1.4	1	0	0	1	1	1	1	Ppx/GppA	phosphatase	family
Ist1	PF03398.14	gi|408402647|ref|YP_006860630.1|	-	0.013	15.5	0.3	0.024	14.6	0.3	1.4	1	0	0	1	1	1	0	Regulator	of	Vps4	activity	in	the	MVB	pathway
NRDD	PF13597.6	gi|408402648|ref|YP_006860631.1|	-	6.5e-20	71.4	0.0	1.2e-16	60.6	0.0	2.3	2	0	0	2	2	2	2	Anaerobic	ribonucleoside-triphosphate	reductase
HTH_20	PF12840.7	gi|408402648|ref|YP_006860631.1|	-	9.9e-10	38.3	0.0	4.7e-09	36.2	0.0	2.2	2	0	0	2	2	2	1	Helix-turn-helix	domain
ATP-cone	PF03477.16	gi|408402648|ref|YP_006860631.1|	-	1.7e-09	38.2	0.8	5.3e-09	36.5	0.3	2.2	2	0	0	2	2	2	1	ATP	cone	domain
ZT_dimer	PF16916.5	gi|408402648|ref|YP_006860631.1|	-	0.024	14.8	0.1	0.058	13.5	0.1	1.7	1	0	0	1	1	1	0	Dimerisation	domain	of	Zinc	Transporter
MnmE_helical	PF12631.7	gi|408402648|ref|YP_006860631.1|	-	0.028	14.6	0.0	0.072	13.3	0.0	1.9	1	1	1	2	2	2	0	MnmE	helical	domain
Lig_C	PF18330.1	gi|408402648|ref|YP_006860631.1|	-	0.063	13.3	0.2	3.8	7.5	0.0	2.5	2	0	0	2	2	2	0	Ligase	Pab1020	C-terminal	region
Ribonuc_red_lgC	PF02867.15	gi|408402649|ref|YP_006860632.1|	-	1.1e-189	631.4	0.0	2.5e-189	630.2	0.0	1.6	2	0	0	2	2	2	1	Ribonucleotide	reductase,	barrel	domain
Ribonuc_red_lgN	PF00317.21	gi|408402649|ref|YP_006860632.1|	-	5.4e-30	103.2	0.2	1.7e-29	101.6	0.2	2.0	1	0	0	1	1	1	1	Ribonucleotide	reductase,	all-alpha	domain
ATP-cone	PF03477.16	gi|408402649|ref|YP_006860632.1|	-	5.8e-20	71.7	2.8	8.1e-20	71.2	0.8	2.4	2	0	0	2	2	2	1	ATP	cone	domain
DZR	PF12773.7	gi|408402649|ref|YP_006860632.1|	-	0.071	13.2	1.5	0.13	12.3	1.5	1.4	1	0	0	1	1	1	0	Double	zinc	ribbon
MutL_C	PF08676.11	gi|408402649|ref|YP_006860632.1|	-	0.13	12.1	0.0	0.41	10.4	0.0	1.8	2	0	0	2	2	2	0	MutL	C	terminal	dimerisation	domain
zf-ribbon_3	PF13248.6	gi|408402649|ref|YP_006860632.1|	-	0.22	11.0	5.5	0.15	11.5	3.5	1.7	2	0	0	2	2	2	0	zinc-ribbon	domain
Hormone_3	PF00159.18	gi|408402649|ref|YP_006860632.1|	-	1.2	9.3	3.8	27	4.9	0.1	3.0	3	0	0	3	3	3	0	Pancreatic	hormone	peptide
MarR_2	PF12802.7	gi|408402650|ref|YP_006860633.1|	-	0.0022	17.8	0.0	0.0036	17.1	0.0	1.2	1	0	0	1	1	1	1	MarR	family
Rio2_N	PF09202.11	gi|408402650|ref|YP_006860633.1|	-	0.013	15.7	0.0	0.022	15.0	0.0	1.4	1	0	0	1	1	1	0	Rio2,	N-terminal
TFIIE_alpha	PF02002.17	gi|408402650|ref|YP_006860633.1|	-	0.015	15.2	0.2	0.021	14.7	0.2	1.3	1	1	0	1	1	1	0	TFIIE	alpha	subunit
Thymidylat_synt	PF00303.19	gi|408402650|ref|YP_006860633.1|	-	0.027	13.6	0.1	0.033	13.3	0.1	1.1	1	0	0	1	1	1	0	Thymidylate	synthase
HTH_29	PF13551.6	gi|408402650|ref|YP_006860633.1|	-	0.038	14.0	0.0	0.07	13.2	0.0	1.4	1	0	0	1	1	1	0	Winged	helix-turn	helix
HTH_IclR	PF09339.10	gi|408402650|ref|YP_006860633.1|	-	0.12	12.2	0.0	0.2	11.5	0.0	1.3	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
ABC-3	PF00950.17	gi|408402651|ref|YP_006860634.1|	-	2.3e-28	99.4	20.1	2.5e-28	99.3	20.1	1.0	1	0	0	1	1	1	1	ABC	3	transport	family
FecCD	PF01032.18	gi|408402651|ref|YP_006860634.1|	-	1.5e-06	27.5	18.0	1.7e-06	27.2	18.0	1.1	1	0	0	1	1	1	1	FecCD	transport	family
EpsG	PF14897.6	gi|408402651|ref|YP_006860634.1|	-	0.25	10.6	12.9	0.064	12.5	7.9	1.9	1	1	1	2	2	2	0	EpsG	family
ABC_tran	PF00005.27	gi|408402652|ref|YP_006860635.1|	-	1.8e-29	103.0	0.4	5.3e-29	101.5	0.1	1.7	2	0	0	2	2	2	1	ABC	transporter
AAA_21	PF13304.6	gi|408402652|ref|YP_006860635.1|	-	1.1e-09	38.6	0.1	1.5e-05	25.0	0.0	2.1	1	1	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|408402652|ref|YP_006860635.1|	-	0.0013	18.2	0.6	0.0043	16.5	0.6	1.8	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_23	PF13476.6	gi|408402652|ref|YP_006860635.1|	-	0.0025	18.3	2.1	0.0049	17.4	2.0	1.4	1	1	0	1	1	1	1	AAA	domain
TniB	PF05621.11	gi|408402652|ref|YP_006860635.1|	-	0.04	13.3	0.0	0.059	12.8	0.0	1.3	1	0	0	1	1	1	0	Bacterial	TniB	protein
SbcCD_C	PF13558.6	gi|408402652|ref|YP_006860635.1|	-	0.095	12.9	0.1	3.7	7.8	0.1	2.4	1	1	0	1	1	1	0	Putative	exonuclease	SbcCD,	C	subunit
ZnuA	PF01297.17	gi|408402653|ref|YP_006860636.1|	-	2.3e-72	243.5	0.0	2.6e-72	243.3	0.0	1.0	1	0	0	1	1	1	1	Zinc-uptake	complex	component	A	periplasmic
NikR_C	PF08753.11	gi|408402654|ref|YP_006860637.1|	-	4.5e-16	58.8	0.8	6.4e-16	58.3	0.8	1.2	1	0	0	1	1	1	1	NikR	C	terminal	nickel	binding	domain
RHH_1	PF01402.21	gi|408402654|ref|YP_006860637.1|	-	8e-08	32.0	0.0	1.7e-07	30.9	0.0	1.5	1	0	0	1	1	1	1	Ribbon-helix-helix	protein,	copG	family
RHH_8	PF17723.1	gi|408402654|ref|YP_006860637.1|	-	0.075	13.2	0.1	0.1	12.8	0.1	1.4	1	0	0	1	1	1	0	Ribbon-Helix-Helix	transcriptional	regulator	family
VapB_antitoxin	PF09957.9	gi|408402654|ref|YP_006860637.1|	-	0.11	12.4	0.7	0.21	11.5	0.2	1.8	2	1	0	2	2	2	0	Bacterial	antitoxin	of	type	II	TA	system,	VapB
RHH_3	PF12651.7	gi|408402654|ref|YP_006860637.1|	-	0.15	12.0	0.0	0.34	10.9	0.0	1.6	1	1	0	1	1	1	0	Ribbon-helix-helix	domain
Glyco_tran_28_C	PF04101.16	gi|408402655|ref|YP_006860638.1|	-	5e-14	52.6	0.0	9.5e-14	51.7	0.0	1.6	1	0	0	1	1	1	1	Glycosyltransferase	family	28	C-terminal	domain
Glyco_trans_1_3	PF13528.6	gi|408402655|ref|YP_006860638.1|	-	0.16	11.2	0.0	0.29	10.4	0.0	1.4	1	0	0	1	1	1	0	Glycosyl	transferase	family	1
Kelch_1	PF01344.25	gi|408402656|ref|YP_006860639.1|	-	2.6e-65	215.8	4.5	3.5e-14	52.1	0.0	6.5	7	0	0	7	7	7	6	Kelch	motif
Kelch_6	PF13964.6	gi|408402656|ref|YP_006860639.1|	-	4.7e-49	163.2	10.0	2.2e-13	49.9	0.0	7.3	5	2	2	7	7	7	6	Kelch	motif
Kelch_4	PF13418.6	gi|408402656|ref|YP_006860639.1|	-	3.6e-33	113.3	4.2	2.4e-09	37.0	0.0	6.4	6	0	0	6	6	6	6	Galactose	oxidase,	central	domain
Kelch_2	PF07646.15	gi|408402656|ref|YP_006860639.1|	-	7.7e-33	111.2	0.0	3.7e-07	29.9	0.0	6.8	6	1	0	6	6	6	6	Kelch	motif
Kelch_3	PF13415.6	gi|408402656|ref|YP_006860639.1|	-	1.5e-30	104.8	17.7	4.7e-09	36.3	0.1	6.9	7	0	0	7	7	7	5	Galactose	oxidase,	central	domain
Kelch_5	PF13854.6	gi|408402656|ref|YP_006860639.1|	-	1.1e-26	92.3	4.2	2.8e-05	24.0	0.0	6.4	6	0	0	6	6	6	5	Kelch	motif
PQQ_3	PF13570.6	gi|408402656|ref|YP_006860639.1|	-	9.6e-06	25.9	8.0	0.027	14.9	0.0	5.3	6	0	0	6	6	6	1	PQQ-like	domain
Phage_head_chap	PF11113.8	gi|408402657|ref|YP_006860640.1|	-	0.03	14.4	0.0	0.036	14.2	0.0	1.1	1	0	0	1	1	1	0	Head	assembly	gene	product
DZR	PF12773.7	gi|408402658|ref|YP_006860641.1|	-	0.0071	16.3	1.3	0.013	15.5	1.3	1.5	1	1	0	1	1	1	1	Double	zinc	ribbon
zf_C2H2_13	PF18508.1	gi|408402658|ref|YP_006860641.1|	-	0.0082	15.7	0.5	0.18	11.4	0.0	2.2	2	0	0	2	2	2	1	Zinc	finger	domain
Zn-ribbon_8	PF09723.10	gi|408402658|ref|YP_006860641.1|	-	0.023	14.8	0.8	0.36	11.0	0.1	2.1	2	0	0	2	2	2	0	Zinc	ribbon	domain
zf-ribbon_3	PF13248.6	gi|408402658|ref|YP_006860641.1|	-	0.026	13.9	1.4	4.1	6.9	0.1	2.3	2	0	0	2	2	2	0	zinc-ribbon	domain
Nudix_N_2	PF14803.6	gi|408402658|ref|YP_006860641.1|	-	0.029	14.3	1.2	6.1	6.9	0.1	2.2	2	0	0	2	2	2	0	Nudix	N-terminal
TF_Zn_Ribbon	PF08271.12	gi|408402658|ref|YP_006860641.1|	-	0.056	13.0	1.9	0.21	11.2	1.9	1.8	1	1	0	1	1	1	0	TFIIB	zinc-binding
A2L_zn_ribbon	PF08792.10	gi|408402659|ref|YP_006860642.1|	-	0.013	15.2	0.3	0.021	14.5	0.3	1.3	1	0	0	1	1	1	0	A2L	zinc	ribbon	domain
zf-BED	PF02892.15	gi|408402659|ref|YP_006860642.1|	-	0.086	12.9	0.0	0.16	12.0	0.0	1.5	1	0	0	1	1	1	0	BED	zinc	finger
FYVE	PF01363.21	gi|408402660|ref|YP_006860643.1|	-	1.1	9.5	13.4	4.5	7.5	11.8	2.5	1	1	1	2	2	2	0	FYVE	zinc	finger
ZZ	PF00569.17	gi|408402660|ref|YP_006860643.1|	-	3.3	7.6	13.5	0.39	10.6	4.8	3.3	3	1	0	3	3	3	0	Zinc	finger,	ZZ	type
FYVE_2	PF02318.16	gi|408402660|ref|YP_006860643.1|	-	5.1	7.4	9.8	8.7	6.6	7.8	2.2	1	1	1	2	2	2	0	FYVE-type	zinc	finger
GTP-bdg_N	PF13167.6	gi|408402662|ref|YP_006860645.1|	-	1.2e-18	67.6	0.9	3.4e-18	66.1	0.2	2.1	2	0	0	2	2	2	1	GTP-binding	GTPase	N-terminal
GTP-bdg_M	PF16360.5	gi|408402662|ref|YP_006860645.1|	-	9.8e-18	64.5	2.7	9.8e-18	64.5	2.7	2.2	2	0	0	2	2	2	1	GTP-binding	GTPase	Middle	Region
MMR_HSR1	PF01926.23	gi|408402662|ref|YP_006860645.1|	-	7.5e-16	58.2	0.1	1.9e-15	57.0	0.1	1.8	1	1	0	1	1	1	1	50S	ribosome-binding	GTPase
RsgA_GTPase	PF03193.16	gi|408402662|ref|YP_006860645.1|	-	4.4e-09	36.4	2.6	0.00051	20.0	0.1	2.4	2	0	0	2	2	2	2	RsgA	GTPase
SRPRB	PF09439.10	gi|408402662|ref|YP_006860645.1|	-	2.3e-07	30.4	0.7	5.2e-07	29.3	0.7	1.6	1	0	0	1	1	1	1	Signal	recognition	particle	receptor	beta	subunit
FeoB_N	PF02421.18	gi|408402662|ref|YP_006860645.1|	-	1.4e-06	27.9	3.3	8.8e-06	25.3	1.1	2.5	2	1	0	2	2	2	1	Ferrous	iron	transport	protein	B
cobW	PF02492.19	gi|408402662|ref|YP_006860645.1|	-	1.3e-05	24.8	4.7	0.014	15.0	0.3	2.5	1	1	1	2	2	2	2	CobW/HypB/UreG,	nucleotide-binding	domain
ABC_tran	PF00005.27	gi|408402662|ref|YP_006860645.1|	-	3.1e-05	24.5	0.5	0.00019	21.9	0.1	2.5	1	1	1	2	2	2	1	ABC	transporter
Arf	PF00025.21	gi|408402662|ref|YP_006860645.1|	-	7.6e-05	22.2	5.6	0.00072	19.1	5.6	2.2	1	1	0	1	1	1	1	ADP-ribosylation	factor	family
MMR_HSR1_Xtn	PF16897.5	gi|408402662|ref|YP_006860645.1|	-	0.0004	20.4	0.9	0.001	19.1	0.9	1.6	1	0	0	1	1	1	1	C-terminal	region	of	MMR_HSR1	domain
AAA_16	PF13191.6	gi|408402662|ref|YP_006860645.1|	-	0.00078	19.9	0.1	0.0016	18.9	0.1	1.6	1	1	0	1	1	1	1	AAA	ATPase	domain
GTP_EFTU	PF00009.27	gi|408402662|ref|YP_006860645.1|	-	0.0011	18.6	4.2	0.074	12.6	3.4	2.5	1	1	0	1	1	1	1	Elongation	factor	Tu	GTP	binding	domain
PduV-EutP	PF10662.9	gi|408402662|ref|YP_006860645.1|	-	0.0022	17.8	2.3	1.5	8.5	0.1	2.7	2	0	0	2	2	2	2	Ethanolamine	utilisation	-	propanediol	utilisation
NB-ARC	PF00931.22	gi|408402662|ref|YP_006860645.1|	-	0.0053	16.0	0.3	0.013	14.7	0.0	1.7	2	0	0	2	2	2	1	NB-ARC	domain
AAA_7	PF12775.7	gi|408402662|ref|YP_006860645.1|	-	0.0063	16.1	0.3	0.016	14.7	0.3	1.7	1	0	0	1	1	1	1	P-loop	containing	dynein	motor	region
SRP54	PF00448.22	gi|408402662|ref|YP_006860645.1|	-	0.0089	15.7	3.1	1.1	8.8	0.2	3.1	1	1	2	3	3	3	1	SRP54-type	protein,	GTPase	domain
Zeta_toxin	PF06414.12	gi|408402662|ref|YP_006860645.1|	-	0.011	15.0	0.0	0.037	13.3	0.0	1.9	2	0	0	2	2	1	0	Zeta	toxin
AAA_18	PF13238.6	gi|408402662|ref|YP_006860645.1|	-	0.012	16.1	1.4	0.13	12.8	0.1	2.6	3	0	0	3	3	2	0	AAA	domain
TniB	PF05621.11	gi|408402662|ref|YP_006860645.1|	-	0.019	14.4	0.6	0.054	12.9	0.1	2.0	2	0	0	2	2	2	0	Bacterial	TniB	protein
AAA_33	PF13671.6	gi|408402662|ref|YP_006860645.1|	-	0.022	15.0	0.3	0.05	13.8	0.2	1.7	1	1	0	1	1	1	0	AAA	domain
AAA_22	PF13401.6	gi|408402662|ref|YP_006860645.1|	-	0.022	15.0	1.4	0.045	14.0	0.3	2.2	2	1	0	2	2	2	0	AAA	domain
Roc	PF08477.13	gi|408402662|ref|YP_006860645.1|	-	0.04	14.1	4.1	0.085	13.1	0.9	3.0	3	1	1	4	4	3	0	Ras	of	Complex,	Roc,	domain	of	DAPkinase
AAA_30	PF13604.6	gi|408402662|ref|YP_006860645.1|	-	0.085	12.6	0.3	0.22	11.2	0.1	1.9	2	1	0	2	2	2	0	AAA	domain
AAA_29	PF13555.6	gi|408402662|ref|YP_006860645.1|	-	0.099	12.4	0.0	0.29	10.9	0.0	1.8	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
AAA_23	PF13476.6	gi|408402662|ref|YP_006860645.1|	-	0.1	13.1	0.3	0.1	13.1	0.3	2.4	1	1	1	2	2	2	0	AAA	domain
TsaE	PF02367.17	gi|408402662|ref|YP_006860645.1|	-	0.11	12.6	0.1	0.5	10.4	0.1	2.1	2	0	0	2	2	2	0	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
T2SSE	PF00437.20	gi|408402662|ref|YP_006860645.1|	-	0.13	11.3	2.1	0.26	10.3	0.4	2.1	2	1	0	2	2	2	0	Type	II/IV	secretion	system	protein
Ras	PF00071.22	gi|408402662|ref|YP_006860645.1|	-	0.14	11.8	1.1	0.46	10.1	1.1	1.9	1	1	0	1	1	1	0	Ras	family
Dynamin_N	PF00350.23	gi|408402662|ref|YP_006860645.1|	-	0.26	11.3	3.6	2	8.5	0.4	2.7	2	1	1	3	3	3	0	Dynamin	family
eIF-1a	PF01176.19	gi|408402666|ref|YP_006860649.1|	-	3.1e-20	71.7	0.7	3.9e-20	71.4	0.7	1.1	1	0	0	1	1	1	1	Translation	initiation	factor	1A	/	IF-1
Myosin_N	PF02736.19	gi|408402666|ref|YP_006860649.1|	-	0.00039	20.2	0.9	0.003	17.3	0.3	2.2	2	0	0	2	2	2	1	Myosin	N-terminal	SH3-like	domain
RsgA_N	PF16745.5	gi|408402666|ref|YP_006860649.1|	-	0.0057	16.4	0.5	0.0089	15.8	0.5	1.4	1	0	0	1	1	1	1	RsgA	N-terminal	domain
Prot_ATP_ID_OB	PF16450.5	gi|408402666|ref|YP_006860649.1|	-	0.055	13.4	0.0	0.082	12.9	0.0	1.2	1	0	0	1	1	1	0	Proteasomal	ATPase	OB	C-terminal	domain
AsnC_trans_reg	PF01037.21	gi|408402667|ref|YP_006860650.1|	-	8.1e-08	32.1	0.3	8.5e-08	32.1	0.3	1.1	1	0	0	1	1	1	1	Lrp/AsnC	ligand	binding	domain
PKD	PF00801.20	gi|408402667|ref|YP_006860650.1|	-	0.0081	16.0	0.0	0.012	15.5	0.0	1.3	1	0	0	1	1	1	1	PKD	domain
Fer4_23	PF18009.1	gi|408402667|ref|YP_006860650.1|	-	0.046	14.1	0.0	0.056	13.9	0.0	1.1	1	0	0	1	1	1	0	4Fe-4S	iron-sulfur	cluster	binding	domain
FemAB_like	PF04339.12	gi|408402668|ref|YP_006860651.1|	-	0.4	9.8	4.1	0.41	9.7	4.1	1.0	1	0	0	1	1	1	0	Peptidogalycan	biosysnthesis/recognition
CE2_N	PF17996.1	gi|408402670|ref|YP_006860653.1|	-	0.14	12.1	0.0	0.36	10.8	0.0	1.7	1	0	0	1	1	1	0	Carbohydrate	esterase	2	N-terminal
zf-C2H2	PF00096.26	gi|408402671|ref|YP_006860654.1|	-	0.016	15.6	3.0	0.019	15.4	0.5	2.3	3	0	0	3	3	3	0	Zinc	finger,	C2H2	type
CRAL_TRIO_2	PF13716.6	gi|408402671|ref|YP_006860654.1|	-	0.043	14.0	0.0	0.052	13.7	0.0	1.1	1	0	0	1	1	1	0	Divergent	CRAL/TRIO	domain
Na_H_Exchanger	PF00999.21	gi|408402674|ref|YP_006860657.1|	-	4.4e-62	210.1	46.9	5.7e-62	209.7	46.9	1.0	1	0	0	1	1	1	1	Sodium/hydrogen	exchanger	family
PspB	PF06667.12	gi|408402674|ref|YP_006860657.1|	-	0.16	12.1	0.4	0.91	9.6	0.0	2.3	2	0	0	2	2	2	0	Phage	shock	protein	B
VAPB_antitox	PF02697.14	gi|408402675|ref|YP_006860658.1|	-	7.1e-19	68.4	0.1	8e-19	68.2	0.1	1.0	1	0	0	1	1	1	1	Putative	antitoxin
PIN	PF01850.21	gi|408402676|ref|YP_006860659.1|	-	8.9e-17	61.7	0.3	9.8e-17	61.6	0.3	1.0	1	0	0	1	1	1	1	PIN	domain
PIN_12	PF16289.5	gi|408402676|ref|YP_006860659.1|	-	0.0013	19.2	0.1	0.0017	18.9	0.1	1.2	1	0	0	1	1	1	1	PIN	domain
DUF5112	PF17139.4	gi|408402676|ref|YP_006860659.1|	-	0.014	14.8	0.1	0.018	14.5	0.1	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF5112)
PIN_3	PF13470.6	gi|408402676|ref|YP_006860659.1|	-	0.059	14.1	0.2	0.088	13.6	0.2	1.3	1	1	0	1	1	1	0	PIN	domain
TraL	PF07178.11	gi|408402677|ref|YP_006860660.1|	-	0.055	13.9	1.1	0.055	13.9	1.1	1.0	1	0	0	1	1	1	0	TraL	protein
DUF3742	PF12553.8	gi|408402677|ref|YP_006860660.1|	-	0.11	12.6	0.5	0.12	12.5	0.5	1.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3742)
FeoB_associated	PF12669.7	gi|408402677|ref|YP_006860660.1|	-	0.21	12.0	1.9	0.3	11.5	1.9	1.3	1	0	0	1	1	1	0	FeoB-associated	Cys-rich	membrane	protein
Polysacc_deac_1	PF01522.21	gi|408402678|ref|YP_006860661.1|	-	0.00018	21.4	0.0	0.0013	18.6	0.0	2.1	1	1	0	1	1	1	1	Polysaccharide	deacetylase
rve_2	PF13333.6	gi|408402679|ref|YP_006860662.1|	-	0.067	13.4	0.0	0.15	12.3	0.0	1.7	1	1	1	2	2	2	0	Integrase	core	domain
HTH_28	PF13518.6	gi|408402682|ref|YP_006860665.1|	-	2.7e-10	40.2	0.1	3.1e-10	40.0	0.1	1.2	1	0	0	1	1	1	1	Helix-turn-helix	domain
LZ_Tnp_IS481	PF13011.6	gi|408402682|ref|YP_006860665.1|	-	1.3e-09	38.4	0.0	1.4e-09	38.4	0.0	1.1	1	0	0	1	1	1	1	leucine-zipper	of	insertion	element	IS481
HTH_29	PF13551.6	gi|408402682|ref|YP_006860665.1|	-	1.8e-07	31.0	0.2	2.1e-07	30.9	0.2	1.2	1	0	0	1	1	1	1	Winged	helix-turn	helix
HTH_23	PF13384.6	gi|408402682|ref|YP_006860665.1|	-	3.1e-06	26.8	0.1	1e-05	25.2	0.1	1.8	1	1	0	1	1	1	1	Homeodomain-like	domain
HTH_32	PF13565.6	gi|408402682|ref|YP_006860665.1|	-	0.00019	22.0	0.2	0.00035	21.1	0.1	1.5	1	1	1	2	2	2	1	Homeodomain-like	domain
Terminase_5	PF06056.12	gi|408402682|ref|YP_006860665.1|	-	0.011	15.6	0.1	0.013	15.4	0.1	1.3	1	0	0	1	1	1	0	Putative	ATPase	subunit	of	terminase	(gpP-like)
HTH_Tnp_1	PF01527.20	gi|408402682|ref|YP_006860665.1|	-	0.011	16.0	0.0	0.013	15.8	0.0	1.1	1	0	0	1	1	1	0	Transposase
HTH_Tnp_IS630	PF01710.16	gi|408402682|ref|YP_006860665.1|	-	0.049	13.7	0.1	0.051	13.6	0.1	1.1	1	0	0	1	1	1	0	Transposase
HTH_Tnp_1_2	PF13022.6	gi|408402682|ref|YP_006860665.1|	-	0.05	13.8	0.1	0.06	13.5	0.1	1.2	1	0	0	1	1	1	0	Helix-turn-helix	of	insertion	element	transposase
VAPB_antitox	PF02697.14	gi|408402683|ref|YP_006860666.1|	-	5e-20	72.0	2.9	5.6e-20	71.9	2.9	1.0	1	0	0	1	1	1	1	Putative	antitoxin
Fe-S_biosyn	PF01521.20	gi|408402683|ref|YP_006860666.1|	-	0.079	13.2	0.0	0.1	12.8	0.0	1.3	1	0	0	1	1	1	0	Iron-sulphur	cluster	biosynthesis
PIN	PF01850.21	gi|408402684|ref|YP_006860667.1|	-	1.9e-12	47.7	0.2	2.1e-12	47.6	0.2	1.0	1	0	0	1	1	1	1	PIN	domain
HEPN_Apea	PF18739.1	gi|408402684|ref|YP_006860667.1|	-	0.04	14.4	0.1	0.058	13.8	0.1	1.3	1	0	0	1	1	1	0	Apea-like	HEPN
Kdo	PF06293.14	gi|408402684|ref|YP_006860667.1|	-	0.043	13.2	0.0	0.063	12.6	0.0	1.2	1	0	0	1	1	1	0	Lipopolysaccharide	kinase	(Kdo/WaaP)	family
DUF5615	PF18480.1	gi|408402684|ref|YP_006860667.1|	-	0.13	12.0	0.0	0.3	10.9	0.0	1.6	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF5615)
PIN	PF01850.21	gi|408402685|ref|YP_006860668.1|	-	3.3e-15	56.7	0.1	3.6e-15	56.5	0.1	1.0	1	0	0	1	1	1	1	PIN	domain
VAPB_antitox	PF02697.14	gi|408402686|ref|YP_006860669.1|	-	3.3e-21	75.8	4.3	3.7e-21	75.7	4.3	1.0	1	0	0	1	1	1	1	Putative	antitoxin
VirDNA-topo-I_N	PF09266.10	gi|408402686|ref|YP_006860669.1|	-	0.12	12.6	0.0	0.16	12.2	0.0	1.3	1	0	0	1	1	1	0	Viral	DNA	topoisomerase	I,	N-terminal
Sld7_N	PF18636.1	gi|408402687|ref|YP_006860670.1|	-	0.11	12.8	0.0	0.11	12.8	0.0	1.0	1	0	0	1	1	1	0	Mitochondrial	morphogenesis	protein	SLD7	N-terminal	domain
DUF772	PF05598.11	gi|408402688|ref|YP_006860671.1|	-	0.026	14.5	0.1	0.027	14.5	0.1	1.1	1	0	0	1	1	1	0	Transposase	domain	(DUF772)
DDE_Tnp_1	PF01609.21	gi|408402689|ref|YP_006860672.1|	-	0.06	13.0	0.1	0.13	11.9	0.1	1.7	1	1	0	1	1	1	0	Transposase	DDE	domain
Fe_bilin_red	PF05996.12	gi|408402689|ref|YP_006860672.1|	-	0.08	12.6	0.0	0.1	12.3	0.0	1.2	1	0	0	1	1	1	0	Ferredoxin-dependent	bilin	reductase
MannoseP_isomer	PF01050.18	gi|408402690|ref|YP_006860673.1|	-	1.2e-19	70.7	0.0	1.5e-19	70.4	0.0	1.1	1	0	0	1	1	1	1	Mannose-6-phosphate	isomerase
Cupin_2	PF07883.11	gi|408402690|ref|YP_006860673.1|	-	1.7e-06	27.7	0.0	2.6e-06	27.0	0.0	1.3	1	0	0	1	1	1	1	Cupin	domain
Cupin_1	PF00190.22	gi|408402690|ref|YP_006860673.1|	-	0.00054	19.6	0.0	0.00073	19.2	0.0	1.2	1	0	0	1	1	1	1	Cupin
Pirin_C_2	PF17954.1	gi|408402690|ref|YP_006860673.1|	-	0.0059	16.8	0.0	0.0089	16.2	0.0	1.3	1	0	0	1	1	1	1	Quercetinase	C-terminal	cupin	domain
Lyx_isomer	PF07385.12	gi|408402690|ref|YP_006860673.1|	-	0.028	13.7	0.0	0.035	13.4	0.0	1.3	1	0	0	1	1	1	0	D-lyxose	isomerase
FdtA	PF05523.11	gi|408402690|ref|YP_006860673.1|	-	0.055	13.2	0.0	0.07	12.8	0.0	1.2	1	0	0	1	1	1	0	WxcM-like,	C-terminal
DUF4131	PF13567.6	gi|408402690|ref|YP_006860673.1|	-	0.17	11.5	0.1	0.23	11.1	0.1	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4131)
Transposase_20	PF02371.16	gi|408402694|ref|YP_006860677.1|	-	2.1e-17	63.2	0.0	2.4e-17	63.0	0.0	1.1	1	0	0	1	1	1	1	Transposase	IS116/IS110/IS902	family
DUF3263	PF11662.8	gi|408402694|ref|YP_006860677.1|	-	0.024	14.5	0.0	0.033	14.0	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3263)
HTH_OrfB_IS605	PF12323.8	gi|408402696|ref|YP_006860679.1|	-	4.5e-13	48.5	0.1	4.5e-13	48.5	0.1	1.5	2	0	0	2	2	2	1	Helix-turn-helix	domain
DUF3769	PF12600.8	gi|408402696|ref|YP_006860679.1|	-	0.019	13.9	0.1	0.022	13.7	0.1	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3769)
OrfB_IS605	PF01385.19	gi|408402698|ref|YP_006860681.1|	-	4.6e-17	62.4	0.4	6.6e-17	61.9	0.4	1.2	1	0	0	1	1	1	1	Probable	transposase
OrfB_Zn_ribbon	PF07282.11	gi|408402699|ref|YP_006860682.1|	-	2.7e-21	75.2	3.5	2.8e-21	75.2	1.9	1.9	2	0	0	2	2	2	1	Putative	transposase	DNA-binding	domain
OrfB_IS605	PF01385.19	gi|408402699|ref|YP_006860682.1|	-	6.6e-11	42.5	0.2	2.3e-10	40.8	0.2	1.9	1	0	0	1	1	1	1	Probable	transposase
Zn_Tnp_IS1595	PF12760.7	gi|408402699|ref|YP_006860682.1|	-	0.0013	18.7	5.6	0.0028	17.6	5.6	1.6	1	0	0	1	1	1	1	Transposase	zinc-ribbon	domain
RNA_POL_M_15KD	PF02150.16	gi|408402699|ref|YP_006860682.1|	-	0.12	12.3	2.3	0.26	11.2	2.3	1.5	1	0	0	1	1	1	0	RNA	polymerases	M/15	Kd	subunit
Staufen_C	PF16482.5	gi|408402699|ref|YP_006860682.1|	-	0.13	12.4	0.0	0.24	11.6	0.0	1.4	1	0	0	1	1	1	0	Staufen	C-terminal	domain
DUF2387	PF09526.10	gi|408402699|ref|YP_006860682.1|	-	0.21	11.7	2.9	1.2	9.3	3.0	2.1	1	1	1	2	2	2	0	Probable	metal-binding	protein	(DUF2387)
Lar_restr_allev	PF14354.6	gi|408402699|ref|YP_006860682.1|	-	0.65	10.4	4.2	1.4	9.4	4.2	1.5	1	0	0	1	1	1	0	Restriction	alleviation	protein	Lar
Zn-ribbon_8	PF09723.10	gi|408402699|ref|YP_006860682.1|	-	0.84	9.8	3.2	17	5.7	0.1	2.4	2	0	0	2	2	2	0	Zinc	ribbon	domain
TackOD1	PF18551.1	gi|408402699|ref|YP_006860682.1|	-	0.93	9.1	7.3	0.19	11.4	3.5	1.7	2	0	0	2	2	2	0	Thaumarchaeal	output	domain	1
MG2	PF01835.19	gi|408402701|ref|YP_006860684.1|	-	0.0089	16.5	4.6	0.23	11.9	0.0	4.8	5	0	0	5	5	5	1	MG2	domain
Wzt_C	PF14524.6	gi|408402701|ref|YP_006860684.1|	-	0.043	13.8	0.0	0.29	11.2	0.0	2.4	2	0	0	2	2	2	0	Wzt	C-terminal	domain
ASH	PF15780.5	gi|408402701|ref|YP_006860684.1|	-	1.9	8.7	9.4	0.52	10.5	0.1	4.8	5	1	0	5	5	5	0	Abnormal	spindle-like	microcephaly-assoc'd,	ASPM-SPD-2-Hydin
HTH_OrfB_IS605	PF12323.8	gi|408402703|ref|YP_006860686.1|	-	6.3e-15	54.4	0.1	7.4e-15	54.2	0.1	1.0	1	0	0	1	1	1	1	Helix-turn-helix	domain
PIN	PF01850.21	gi|408402704|ref|YP_006860687.1|	-	8.7e-11	42.4	0.2	1e-10	42.2	0.2	1.0	1	0	0	1	1	1	1	PIN	domain
DUF1685	PF07939.11	gi|408402704|ref|YP_006860687.1|	-	0.092	12.5	0.0	0.15	11.8	0.0	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1685)
DUF5072	PF16807.5	gi|408402704|ref|YP_006860687.1|	-	0.093	12.8	0.0	0.13	12.4	0.0	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF5072)
VAPB_antitox	PF02697.14	gi|408402705|ref|YP_006860688.1|	-	2.8e-17	63.2	0.1	3.2e-17	63.1	0.1	1.0	1	0	0	1	1	1	1	Putative	antitoxin
VAPB_antitox	PF02697.14	gi|408402707|ref|YP_006860690.1|	-	0.0027	18.5	5.0	0.0051	17.6	4.6	1.8	1	1	0	1	1	1	1	Putative	antitoxin
HHH_9	PF17674.1	gi|408402707|ref|YP_006860690.1|	-	0.1	13.5	1.1	0.35	11.8	1.0	1.9	1	1	0	1	1	1	0	HHH	domain
ParE_toxin	PF05016.15	gi|408402708|ref|YP_006860691.1|	-	5.1e-09	36.6	0.1	6.4e-09	36.3	0.1	1.1	1	0	0	1	1	1	1	ParE	toxin	of	type	II	toxin-antitoxin	system,	parDE
BTHB	PF18410.1	gi|408402708|ref|YP_006860691.1|	-	0.0074	16.1	0.1	0.013	15.3	0.1	1.4	1	0	0	1	1	1	1	Basic	tilted	helix	bundle	domain
OrfB_Zn_ribbon	PF07282.11	gi|408402709|ref|YP_006860692.1|	-	5.3e-21	74.3	0.3	1.1e-20	73.3	0.3	1.6	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
OrfB_IS605	PF01385.19	gi|408402709|ref|YP_006860692.1|	-	3.4e-18	66.0	1.8	9e-18	64.6	1.8	1.6	1	0	0	1	1	1	1	Probable	transposase
HTH_OrfB_IS605	PF12323.8	gi|408402709|ref|YP_006860692.1|	-	6e-14	51.3	0.2	2.2e-13	49.4	0.2	1.9	1	0	0	1	1	1	1	Helix-turn-helix	domain
DZR	PF12773.7	gi|408402709|ref|YP_006860692.1|	-	0.011	15.7	0.7	0.018	15.1	0.2	1.6	2	0	0	2	2	1	0	Double	zinc	ribbon
HypA	PF01155.19	gi|408402709|ref|YP_006860692.1|	-	0.013	15.5	0.0	0.033	14.2	0.0	1.6	1	0	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
zf-NADH-PPase	PF09297.11	gi|408402709|ref|YP_006860692.1|	-	0.088	12.5	1.7	0.19	11.4	1.7	1.6	1	0	0	1	1	1	0	NADH	pyrophosphatase	zinc	ribbon	domain
zf_UBZ	PF18439.1	gi|408402709|ref|YP_006860692.1|	-	0.11	12.1	0.6	1.3	8.7	0.0	2.3	2	0	0	2	2	2	0	Ubiquitin-Binding	Zinc	Finger
Nudix_N_2	PF14803.6	gi|408402709|ref|YP_006860692.1|	-	0.13	12.2	2.9	1.1	9.2	2.9	2.3	1	1	0	1	1	1	0	Nudix	N-terminal
Rpr2	PF04032.16	gi|408402709|ref|YP_006860692.1|	-	0.14	12.4	8.8	1.8	8.9	0.4	3.6	3	1	1	4	4	4	0	RNAse	P	Rpr2/Rpp21/SNM1	subunit	domain
TF_Zn_Ribbon	PF08271.12	gi|408402709|ref|YP_006860692.1|	-	0.14	11.6	0.2	1.4	8.5	0.0	2.3	2	0	0	2	2	2	0	TFIIB	zinc-binding
zf-ribbon_3	PF13248.6	gi|408402709|ref|YP_006860692.1|	-	0.25	10.8	4.1	2.1	7.9	4.3	2.1	1	1	1	2	2	2	0	zinc-ribbon	domain
zinc_ribbon_2	PF13240.6	gi|408402709|ref|YP_006860692.1|	-	0.31	10.8	4.9	9.8	6.1	0.2	2.8	3	0	0	3	3	3	0	zinc-ribbon	domain
Ribosomal_L1	PF00687.21	gi|408402710|ref|YP_006860693.1|	-	2.5e-38	131.8	0.3	3e-38	131.6	0.3	1.0	1	0	0	1	1	1	1	Ribosomal	protein	L1p/L10e	family
Herpes_UL35	PF04496.12	gi|408402710|ref|YP_006860693.1|	-	0.019	15.3	0.4	0.043	14.1	0.1	1.8	2	0	0	2	2	2	0	Herpesvirus	UL35	family
RL10P_insert	PF17777.1	gi|408402711|ref|YP_006860694.1|	-	1.4e-20	73.0	0.3	3.6e-20	71.7	0.0	1.9	2	0	0	2	2	2	1	Insertion	domain	in	60S	ribosomal	protein	L10P
Ribosomal_L10	PF00466.20	gi|408402711|ref|YP_006860694.1|	-	5.4e-19	68.2	3.6	5.4e-19	68.2	3.6	1.9	2	0	0	2	2	2	1	Ribosomal	protein	L10
DUF1266	PF06889.11	gi|408402711|ref|YP_006860694.1|	-	0.16	12.0	0.2	13	5.8	0.1	2.3	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF1266)
DDE_Tnp_1	PF01609.21	gi|408402713|ref|YP_006860696.1|	-	1.4e-12	47.8	0.4	1.8e-12	47.4	0.4	1.1	1	0	0	1	1	1	1	Transposase	DDE	domain
Peptidase_M16_C	PF05193.21	gi|408402713|ref|YP_006860696.1|	-	0.045	13.8	0.0	0.052	13.6	0.0	1.1	1	0	0	1	1	1	0	Peptidase	M16	inactive	domain
OrfB_Zn_ribbon	PF07282.11	gi|408402714|ref|YP_006860697.1|	-	5.1e-21	74.4	0.3	1.1e-20	73.3	0.3	1.6	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
OrfB_IS605	PF01385.19	gi|408402714|ref|YP_006860697.1|	-	3.1e-18	66.1	1.8	8.5e-18	64.7	1.8	1.6	1	0	0	1	1	1	1	Probable	transposase
HTH_OrfB_IS605	PF12323.8	gi|408402714|ref|YP_006860697.1|	-	8.4e-15	54.0	0.2	3.1e-14	52.2	0.2	2.0	1	0	0	1	1	1	1	Helix-turn-helix	domain
DZR	PF12773.7	gi|408402714|ref|YP_006860697.1|	-	0.011	15.8	0.7	0.017	15.1	0.2	1.6	2	0	0	2	2	1	0	Double	zinc	ribbon
HypA	PF01155.19	gi|408402714|ref|YP_006860697.1|	-	0.013	15.5	0.0	0.032	14.3	0.0	1.6	1	0	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
Rpr2	PF04032.16	gi|408402714|ref|YP_006860697.1|	-	0.021	15.1	6.4	3.2	8.1	0.8	3.6	2	1	1	3	3	3	0	RNAse	P	Rpr2/Rpp21/SNM1	subunit	domain
zf-NADH-PPase	PF09297.11	gi|408402714|ref|YP_006860697.1|	-	0.084	12.6	1.7	0.18	11.5	1.7	1.6	1	0	0	1	1	1	0	NADH	pyrophosphatase	zinc	ribbon	domain
zf_UBZ	PF18439.1	gi|408402714|ref|YP_006860697.1|	-	0.1	12.2	0.6	1.2	8.8	0.0	2.3	2	0	0	2	2	2	0	Ubiquitin-Binding	Zinc	Finger
Nudix_N_2	PF14803.6	gi|408402714|ref|YP_006860697.1|	-	0.13	12.2	3.0	1.1	9.2	3.0	2.3	1	1	0	1	1	1	0	Nudix	N-terminal
TF_Zn_Ribbon	PF08271.12	gi|408402714|ref|YP_006860697.1|	-	0.13	11.8	0.2	1.4	8.5	0.0	2.3	2	0	0	2	2	2	0	TFIIB	zinc-binding
zf-ribbon_3	PF13248.6	gi|408402714|ref|YP_006860697.1|	-	0.24	10.9	4.1	2	7.9	4.3	2.1	1	1	1	2	2	2	0	zinc-ribbon	domain
zinc_ribbon_2	PF13240.6	gi|408402714|ref|YP_006860697.1|	-	0.29	10.9	4.9	9.4	6.1	0.2	2.8	3	0	0	3	3	3	0	zinc-ribbon	domain
zf-C2H2_6	PF13912.6	gi|408402715|ref|YP_006860698.1|	-	2.7e-06	27.2	6.0	3.2e-06	27.0	0.3	2.4	2	0	0	2	2	2	1	C2H2-type	zinc	finger
zf-C2H2_4	PF13894.6	gi|408402715|ref|YP_006860698.1|	-	3.2e-06	27.5	5.8	0.0021	18.7	0.3	2.5	2	0	0	2	2	2	2	C2H2-type	zinc	finger
zf-C2H2	PF00096.26	gi|408402715|ref|YP_006860698.1|	-	2.3e-05	24.6	6.7	0.0038	17.6	0.4	2.6	2	0	0	2	2	2	2	Zinc	finger,	C2H2	type
FYVE	PF01363.21	gi|408402715|ref|YP_006860698.1|	-	0.011	15.9	5.4	0.016	15.4	5.4	1.3	1	0	0	1	1	1	0	FYVE	zinc	finger
zf-C2H2_8	PF15909.5	gi|408402715|ref|YP_006860698.1|	-	0.061	13.6	1.5	0.07	13.4	1.5	1.1	1	0	0	1	1	1	0	C2H2-type	zinc	ribbon
zf-H2C2_2	PF13465.6	gi|408402715|ref|YP_006860698.1|	-	0.089	13.3	1.4	0.089	13.3	1.4	2.8	3	0	0	3	3	3	0	Zinc-finger	double	domain
zf-BED	PF02892.15	gi|408402715|ref|YP_006860698.1|	-	0.11	12.6	5.9	0.18	11.9	1.3	2.2	1	1	1	2	2	2	0	BED	zinc	finger
4HBT	PF03061.22	gi|408402716|ref|YP_006860699.1|	-	0.0039	17.5	0.0	0.0052	17.1	0.0	1.3	1	0	0	1	1	1	1	Thioesterase	superfamily
Cpn60_TCP1	PF00118.24	gi|408402717|ref|YP_006860700.1|	-	5.3e-183	609.1	20.3	6.1e-183	608.9	20.3	1.0	1	0	0	1	1	1	1	TCP-1/cpn60	chaperonin	family
Pyr_redox_3	PF13738.6	gi|408402717|ref|YP_006860700.1|	-	0.08	12.2	0.6	0.14	11.4	0.6	1.4	1	0	0	1	1	1	0	Pyridine	nucleotide-disulphide	oxidoreductase
zinc_ribbon_2	PF13240.6	gi|408402718|ref|YP_006860701.1|	-	3.2e-08	33.0	5.1	6.4e-08	32.1	5.1	1.6	1	0	0	1	1	1	1	zinc-ribbon	domain
zf-ribbon_3	PF13248.6	gi|408402718|ref|YP_006860701.1|	-	1.7e-06	27.2	3.8	3e-06	26.4	3.8	1.4	1	0	0	1	1	1	1	zinc-ribbon	domain
DZR	PF12773.7	gi|408402718|ref|YP_006860701.1|	-	7.4e-06	25.9	0.8	1.4e-05	25.1	0.8	1.4	1	0	0	1	1	1	1	Double	zinc	ribbon
zinc_ribbon_15	PF17032.5	gi|408402718|ref|YP_006860701.1|	-	8.4e-06	26.5	0.5	1.6e-05	25.6	0.5	1.6	1	0	0	1	1	1	1	zinc-ribbon	family
ASFV_p27	PF06556.11	gi|408402718|ref|YP_006860701.1|	-	0.02	15.0	0.4	0.041	14.0	0.4	1.5	1	0	0	1	1	1	0	IAP-like	protein	p27	C-terminus
zf-C4H2	PF10146.9	gi|408402718|ref|YP_006860701.1|	-	0.042	14.2	1.6	0.055	13.8	1.7	1.3	1	1	0	1	1	1	0	Zinc	finger-containing	protein
NRDD	PF13597.6	gi|408402718|ref|YP_006860701.1|	-	0.058	12.2	1.8	0.08	11.7	1.8	1.2	1	0	0	1	1	1	0	Anaerobic	ribonucleoside-triphosphate	reductase
zf-C3HC4_3	PF13920.6	gi|408402718|ref|YP_006860701.1|	-	0.074	12.9	1.8	0.12	12.2	1.8	1.3	1	0	0	1	1	1	0	Zinc	finger,	C3HC4	type	(RING	finger)
SSrecog	PF03531.14	gi|408402718|ref|YP_006860701.1|	-	0.11	12.4	0.0	0.33	10.9	0.0	1.7	1	0	0	1	1	1	0	Structure-specific	recognition	protein	(SSRP1)
Nudix_N_2	PF14803.6	gi|408402718|ref|YP_006860701.1|	-	0.23	11.4	6.2	6.5	6.8	0.2	2.5	2	0	0	2	2	2	0	Nudix	N-terminal
DUF2116	PF09889.9	gi|408402718|ref|YP_006860701.1|	-	0.25	11.4	1.0	0.45	10.5	1.0	1.4	1	0	0	1	1	1	0	Uncharacterized	protein	containing	a	Zn-ribbon	(DUF2116)
YhfH	PF14149.6	gi|408402718|ref|YP_006860701.1|	-	0.34	10.9	6.1	1.3	9.1	0.5	2.4	1	1	1	2	2	2	0	YhfH-like	protein
HypA	PF01155.19	gi|408402718|ref|YP_006860701.1|	-	0.39	10.8	3.6	1	9.4	3.6	1.7	1	1	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
NOB1_Zn_bind	PF08772.11	gi|408402718|ref|YP_006860701.1|	-	0.69	10.1	6.3	5.8	7.1	6.3	2.3	1	1	0	1	1	1	0	Nin	one	binding	(NOB1)	Zn-ribbon	like
Invasin_D3	PF09134.10	gi|408402719|ref|YP_006860702.1|	-	0.0041	17.4	9.8	0.0041	17.4	9.8	3.3	2	2	2	4	4	4	2	Invasin,	domain	3
CBM60	PF16841.5	gi|408402719|ref|YP_006860702.1|	-	0.078	13.4	3.7	1.7	9.1	0.1	3.6	1	1	0	2	2	2	0	Ca-dependent	carbohydrate-binding	module	xylan-binding
DUF1772	PF08592.11	gi|408402720|ref|YP_006860703.1|	-	0.14	12.5	0.0	0.18	12.1	0.0	1.3	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF1772)
HEPN_Apea	PF18739.1	gi|408402722|ref|YP_006860705.1|	-	0.091	13.2	1.5	0.12	12.8	1.5	1.1	1	0	0	1	1	1	0	Apea-like	HEPN
OrfB_Zn_ribbon	PF07282.11	gi|408402722|ref|YP_006860705.1|	-	0.13	12.2	1.4	0.41	10.6	0.2	2.1	2	0	0	2	2	2	0	Putative	transposase	DNA-binding	domain
Ribosomal_L44	PF00935.19	gi|408402723|ref|YP_006860706.1|	-	1.1e-25	89.9	8.2	1.1e-25	89.9	8.2	1.4	2	0	0	2	2	2	1	Ribosomal	protein	L44
NOB1_Zn_bind	PF08772.11	gi|408402723|ref|YP_006860706.1|	-	0.0002	21.4	5.1	0.0013	18.8	0.2	2.1	2	0	0	2	2	2	1	Nin	one	binding	(NOB1)	Zn-ribbon	like
RNA_POL_M_15KD	PF02150.16	gi|408402723|ref|YP_006860706.1|	-	0.00083	19.2	2.4	0.47	10.4	0.2	2.3	2	0	0	2	2	2	2	RNA	polymerases	M/15	Kd	subunit
Ribosomal_L33	PF00471.20	gi|408402723|ref|YP_006860706.1|	-	0.0031	17.9	1.3	0.0031	17.9	1.3	2.4	2	0	0	2	2	2	1	Ribosomal	protein	L33
C1_4	PF07975.12	gi|408402723|ref|YP_006860706.1|	-	0.0058	16.8	3.6	0.019	15.2	0.3	2.1	2	0	0	2	2	2	1	TFIIH	C1-like	domain
Nudix_N_2	PF14803.6	gi|408402723|ref|YP_006860706.1|	-	0.0095	15.8	1.0	1.5	8.8	0.1	2.3	2	0	0	2	2	2	2	Nudix	N-terminal
Rpr2	PF04032.16	gi|408402723|ref|YP_006860706.1|	-	0.045	14.0	4.4	0.093	13.0	4.4	1.6	1	1	0	1	1	1	0	RNAse	P	Rpr2/Rpp21/SNM1	subunit	domain
DZR	PF12773.7	gi|408402723|ref|YP_006860706.1|	-	0.13	12.3	4.7	0.35	10.9	4.7	1.6	1	1	0	1	1	1	0	Double	zinc	ribbon
TFIIS_C	PF01096.18	gi|408402723|ref|YP_006860706.1|	-	0.19	11.6	7.2	1.1	9.1	2.2	2.2	2	0	0	2	2	2	0	Transcription	factor	S-II	(TFIIS)
Ribosomal_S27e	PF01667.17	gi|408402724|ref|YP_006860707.1|	-	1.3e-16	60.0	0.2	1.4e-16	59.9	0.2	1.1	1	0	0	1	1	1	1	Ribosomal	protein	S27
TF_Zn_Ribbon	PF08271.12	gi|408402724|ref|YP_006860707.1|	-	1.4e-05	24.5	0.9	2e-05	24.0	0.9	1.2	1	0	0	1	1	1	1	TFIIB	zinc-binding
OrfB_Zn_ribbon	PF07282.11	gi|408402724|ref|YP_006860707.1|	-	0.0011	18.8	0.2	0.0012	18.7	0.2	1.2	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
Zn_Tnp_IS91	PF14319.6	gi|408402724|ref|YP_006860707.1|	-	0.0024	17.9	0.3	0.0029	17.6	0.3	1.1	1	0	0	1	1	1	1	Transposase	zinc-binding	domain
Zn-ribbon_8	PF09723.10	gi|408402724|ref|YP_006860707.1|	-	0.0055	16.8	0.6	0.0078	16.3	0.6	1.3	1	0	0	1	1	1	1	Zinc	ribbon	domain
zf-dskA_traR	PF01258.17	gi|408402724|ref|YP_006860707.1|	-	0.008	16.1	0.7	2	8.4	0.1	2.3	2	0	0	2	2	2	1	Prokaryotic	dksA/traR	C4-type	zinc	finger
DZR	PF12773.7	gi|408402724|ref|YP_006860707.1|	-	0.008	16.2	0.4	0.011	15.8	0.4	1.3	1	0	0	1	1	1	1	Double	zinc	ribbon
zf-ribbon_3	PF13248.6	gi|408402724|ref|YP_006860707.1|	-	0.012	15.0	1.4	0.46	10.0	0.1	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
zinc_ribbon_2	PF13240.6	gi|408402724|ref|YP_006860707.1|	-	0.017	14.8	1.6	1.4	8.7	0.1	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
zf-RING_9	PF13901.6	gi|408402724|ref|YP_006860707.1|	-	0.021	14.8	1.1	0.026	14.5	1.1	1.1	1	0	0	1	1	1	0	Putative	zinc-RING	and/or	ribbon
Lar_restr_allev	PF14354.6	gi|408402724|ref|YP_006860707.1|	-	0.021	15.2	0.1	0.023	15.1	0.1	1.2	1	0	0	1	1	1	0	Restriction	alleviation	protein	Lar
zinc_ribbon_4	PF13717.6	gi|408402724|ref|YP_006860707.1|	-	0.022	14.6	1.0	2.2	8.3	0.1	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
zinc_ribbon_6	PF14599.6	gi|408402724|ref|YP_006860707.1|	-	0.023	14.7	0.9	0.032	14.2	0.9	1.2	1	0	0	1	1	1	0	Zinc-ribbon
HypA	PF01155.19	gi|408402724|ref|YP_006860707.1|	-	0.045	13.8	0.4	0.056	13.5	0.4	1.1	1	0	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
zf-ACC	PF17848.1	gi|408402724|ref|YP_006860707.1|	-	0.046	13.8	5.5	0.88	9.7	0.1	2.4	2	0	0	2	2	2	0	Acetyl-coA	carboxylase	zinc	finger	domain
Mcm10	PF09332.11	gi|408402724|ref|YP_006860707.1|	-	0.047	13.1	0.1	0.057	12.8	0.1	1.0	1	0	0	1	1	1	0	Mcm10	replication	factor
FeS	PF04060.13	gi|408402724|ref|YP_006860707.1|	-	0.05	13.3	4.3	1.7	8.4	0.5	2.2	2	0	0	2	2	2	0	Putative	Fe-S	cluster
zf-C4_Topoisom	PF01396.19	gi|408402724|ref|YP_006860707.1|	-	0.1	12.4	4.0	4.9	7.0	0.2	2.2	1	1	1	2	2	2	0	Topoisomerase	DNA	binding	C4	zinc	finger
CCCAP	PF15964.5	gi|408402724|ref|YP_006860707.1|	-	0.18	10.1	0.0	0.18	10.1	0.0	1.0	1	0	0	1	1	1	0	Centrosomal	colon	cancer	autoantigen	protein	family
zf-C2H2_3	PF13878.6	gi|408402724|ref|YP_006860707.1|	-	0.29	11.0	1.7	13	5.7	0.1	2.1	2	0	0	2	2	2	0	zinc-finger	of	acetyl-transferase	ESCO
CpXC	PF14353.6	gi|408402724|ref|YP_006860707.1|	-	0.32	11.1	2.6	3.4	7.7	0.2	2.0	1	1	1	2	2	2	0	CpXC	protein
TFIIS_C	PF01096.18	gi|408402724|ref|YP_006860707.1|	-	0.39	10.6	5.2	18	5.3	5.2	2.1	1	1	0	1	1	1	0	Transcription	factor	S-II	(TFIIS)
DNA_RNApol_7kD	PF03604.13	gi|408402724|ref|YP_006860707.1|	-	1.3	8.8	5.6	52	3.6	5.6	2.2	1	1	0	1	1	1	0	DNA	directed	RNA	polymerase,	7	kDa	subunit
NTP_transf_3	PF12804.7	gi|408402725|ref|YP_006860708.1|	-	6.4e-15	55.9	0.0	7.2e-15	55.7	0.0	1.2	1	0	0	1	1	1	1	MobA-like	NTP	transferase	domain
IspD	PF01128.19	gi|408402725|ref|YP_006860708.1|	-	4.2e-06	26.7	0.0	0.00021	21.1	0.0	2.5	1	1	2	3	3	3	2	2-C-methyl-D-erythritol	4-phosphate	cytidylyltransferase
CTP_transf_3	PF02348.19	gi|408402725|ref|YP_006860708.1|	-	0.0004	20.4	0.0	0.00078	19.4	0.0	1.6	1	1	0	1	1	1	1	Cytidylyltransferase
CofC	PF01983.16	gi|408402725|ref|YP_006860708.1|	-	0.0011	18.1	0.0	0.0019	17.4	0.0	1.3	1	0	0	1	1	1	1	Guanylyl	transferase	CofC	like
NTP_transferase	PF00483.23	gi|408402725|ref|YP_006860708.1|	-	0.013	15.0	0.0	0.026	14.1	0.0	1.5	1	1	0	1	1	1	0	Nucleotidyl	transferase
RMMBL	PF07521.12	gi|408402725|ref|YP_006860708.1|	-	0.15	12.0	0.0	0.31	11.0	0.0	1.5	1	0	0	1	1	1	0	Zn-dependent	metallo-hydrolase	RNA	specificity	domain
CobS	PF02654.15	gi|408402726|ref|YP_006860709.1|	-	3.7e-38	131.8	19.0	4.3e-38	131.6	19.0	1.0	1	0	0	1	1	1	1	Cobalamin-5-phosphate	synthase
CobD_Cbib	PF03186.13	gi|408402727|ref|YP_006860710.1|	-	3.9e-88	295.3	4.6	4.9e-88	294.9	4.6	1.1	1	0	0	1	1	1	1	CobD/Cbib	protein
DUF4133	PF13571.6	gi|408402727|ref|YP_006860710.1|	-	7.6	6.9	10.9	0.57	10.6	3.0	2.5	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4133)
CbiA	PF01656.23	gi|408402728|ref|YP_006860711.1|	-	5.1e-21	75.1	0.0	7.2e-21	74.6	0.0	1.2	1	0	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
AAA_26	PF13500.6	gi|408402728|ref|YP_006860711.1|	-	9.5e-19	68.0	0.1	2.1e-17	63.6	0.1	2.1	1	1	0	1	1	1	1	AAA	domain
VirC1	PF07015.11	gi|408402728|ref|YP_006860711.1|	-	0.051	12.9	0.1	0.096	12.0	0.1	1.4	1	0	0	1	1	1	0	VirC1	protein
MobB	PF03205.14	gi|408402728|ref|YP_006860711.1|	-	0.059	13.3	0.0	0.57	10.1	0.0	2.3	2	0	0	2	2	2	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
NTPase_1	PF03266.15	gi|408402728|ref|YP_006860711.1|	-	0.13	12.1	0.3	1.3	8.9	0.0	2.4	3	0	0	3	3	3	0	NTPase
Aminotran_1_2	PF00155.21	gi|408402729|ref|YP_006860712.1|	-	1.2e-44	153.0	0.0	1.4e-44	152.8	0.0	1.0	1	0	0	1	1	1	1	Aminotransferase	class	I	and	II
Fic	PF02661.18	gi|408402731|ref|YP_006860714.1|	-	2.2e-23	82.9	0.1	8.1e-23	81.1	0.0	2.0	2	1	2	4	4	4	1	Fic/DOC	family
ResIII	PF04851.15	gi|408402732|ref|YP_006860715.1|	-	1.5e-25	90.2	0.0	1e-23	84.2	0.0	2.5	2	1	0	2	2	2	1	Type	III	restriction	enzyme,	res	subunit
ERCC3_RAD25_C	PF16203.5	gi|408402732|ref|YP_006860715.1|	-	1.8e-17	63.4	0.3	4.5e-17	62.1	0.2	1.8	2	0	0	2	2	2	1	ERCC3/RAD25/XPB	C-terminal	helicase
Helicase_C	PF00271.31	gi|408402732|ref|YP_006860715.1|	-	7.3e-16	58.5	0.8	2e-15	57.1	0.0	2.1	3	0	0	3	3	3	1	Helicase	conserved	C-terminal	domain
XPB_DRD	PF18458.1	gi|408402732|ref|YP_006860715.1|	-	2.5e-13	49.7	0.0	7.7e-13	48.1	0.0	1.9	1	0	0	1	1	1	1	Xeroderma	pigmentosum	group	B	helicase	damage	recognition	domain
DEAD	PF00270.29	gi|408402732|ref|YP_006860715.1|	-	1.9e-08	34.3	0.4	3.5e-07	30.1	0.0	2.9	2	2	1	3	3	3	1	DEAD/DEAH	box	helicase
SNF2_N	PF00176.23	gi|408402732|ref|YP_006860715.1|	-	0.0065	15.2	0.0	0.027	13.2	0.0	1.9	1	1	1	2	2	2	1	SNF2	family	N-terminal	domain
DUF4196	PF13846.6	gi|408402732|ref|YP_006860715.1|	-	0.0094	16.2	4.9	0.02	15.1	4.9	1.5	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4196)
DUF790	PF05626.11	gi|408402733|ref|YP_006860716.1|	-	2.3e-83	280.1	0.1	2.5e-76	256.9	0.0	2.6	3	0	0	3	3	3	2	Protein	of	unknown	function	(DUF790)
OrfB_IS605	PF01385.19	gi|408402734|ref|YP_006860717.1|	-	7.4e-09	35.9	0.2	7.8e-09	35.8	0.2	1.0	1	0	0	1	1	1	1	Probable	transposase
Semialdhyde_dhC	PF02774.18	gi|408402735|ref|YP_006860718.1|	-	1.1e-38	133.1	0.0	1.7e-38	132.5	0.0	1.2	1	0	0	1	1	1	1	Semialdehyde	dehydrogenase,	dimerisation	domain
Semialdhyde_dh	PF01118.24	gi|408402735|ref|YP_006860718.1|	-	2.7e-26	92.4	0.0	5.5e-26	91.4	0.0	1.5	1	0	0	1	1	1	1	Semialdehyde	dehydrogenase,	NAD	binding	domain
Gp_dh_C	PF02800.20	gi|408402735|ref|YP_006860718.1|	-	5.2e-06	26.1	0.2	0.0026	17.4	0.1	2.5	2	0	0	2	2	2	2	Glyceraldehyde	3-phosphate	dehydrogenase,	C-terminal	domain
DapB_N	PF01113.20	gi|408402735|ref|YP_006860718.1|	-	0.0035	17.5	0.0	0.0078	16.3	0.0	1.6	1	0	0	1	1	1	1	Dihydrodipicolinate	reductase,	N-terminus
TINF2_N	PF14973.6	gi|408402736|ref|YP_006860719.1|	-	0.067	13.6	0.6	0.076	13.4	0.6	1.1	1	0	0	1	1	1	0	TERF1-interacting	nuclear	factor	2	N-terminus
XhlA	PF10779.9	gi|408402736|ref|YP_006860719.1|	-	0.37	11.0	3.6	0.53	10.5	3.6	1.3	1	0	0	1	1	1	0	Haemolysin	XhlA
OrfB_Zn_ribbon	PF07282.11	gi|408402737|ref|YP_006860720.1|	-	0.02	14.8	0.0	0.032	14.2	0.0	1.4	1	0	0	1	1	1	0	Putative	transposase	DNA-binding	domain
DisA_N	PF02457.16	gi|408402737|ref|YP_006860720.1|	-	0.024	14.2	0.0	0.075	12.6	0.0	1.7	1	1	1	2	2	2	0	DisA	bacterial	checkpoint	controller	nucleotide-binding
DUF2574	PF10836.8	gi|408402737|ref|YP_006860720.1|	-	0.099	12.5	0.3	0.14	12.1	0.3	1.4	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF2574)
AsnC_trans_reg	PF01037.21	gi|408402738|ref|YP_006860721.1|	-	1.9e-15	56.6	0.1	3e-15	55.9	0.1	1.3	1	0	0	1	1	1	1	Lrp/AsnC	ligand	binding	domain
HTH_24	PF13412.6	gi|408402738|ref|YP_006860721.1|	-	2.5e-07	30.1	0.2	5.5e-07	29.0	0.2	1.6	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
MarR	PF01047.22	gi|408402738|ref|YP_006860721.1|	-	0.00013	21.8	0.0	0.00027	20.8	0.0	1.5	1	0	0	1	1	1	1	MarR	family
B-block_TFIIIC	PF04182.12	gi|408402738|ref|YP_006860721.1|	-	0.0019	18.3	0.5	0.0031	17.7	0.4	1.5	1	1	0	1	1	1	1	B-block	binding	subunit	of	TFIIIC
HTH_AsnC-type	PF13404.6	gi|408402738|ref|YP_006860721.1|	-	0.002	17.9	0.0	0.0043	16.9	0.0	1.6	1	0	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
TrmB	PF01978.19	gi|408402738|ref|YP_006860721.1|	-	0.0041	17.0	0.8	0.0068	16.3	0.1	1.7	2	0	0	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_11	PF08279.12	gi|408402738|ref|YP_006860721.1|	-	0.008	16.1	0.1	0.019	14.9	0.1	1.6	1	0	0	1	1	1	1	HTH	domain
GntR	PF00392.21	gi|408402738|ref|YP_006860721.1|	-	0.093	12.4	0.0	3.4	7.4	0.0	2.2	2	0	0	2	2	2	0	Bacterial	regulatory	proteins,	gntR	family
Ribosomal_S25	PF03297.15	gi|408402738|ref|YP_006860721.1|	-	0.098	12.9	1.7	0.21	11.8	0.4	1.9	2	0	0	2	2	2	0	S25	ribosomal	protein
Fe_dep_repress	PF01325.19	gi|408402738|ref|YP_006860721.1|	-	0.099	12.9	0.1	0.28	11.4	0.1	1.7	1	0	0	1	1	1	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
MarR_2	PF12802.7	gi|408402738|ref|YP_006860721.1|	-	0.12	12.2	0.0	0.24	11.3	0.0	1.4	1	0	0	1	1	1	0	MarR	family
UbiA	PF01040.18	gi|408402739|ref|YP_006860722.1|	-	4.3e-52	176.9	22.8	5.3e-52	176.6	22.8	1.1	1	0	0	1	1	1	1	UbiA	prenyltransferase	family
EMG1	PF03587.14	gi|408402740|ref|YP_006860723.1|	-	2.8e-46	157.7	0.0	3.2e-46	157.5	0.0	1.0	1	0	0	1	1	1	1	EMG1/NEP1	methyltransferase
Rpr2	PF04032.16	gi|408402742|ref|YP_006860725.1|	-	1.6e-12	47.6	0.3	2e-12	47.2	0.3	1.1	1	0	0	1	1	1	1	RNAse	P	Rpr2/Rpp21/SNM1	subunit	domain
zinc_ribbon_4	PF13717.6	gi|408402742|ref|YP_006860725.1|	-	0.067	13.1	3.9	1.9	8.5	0.2	2.7	2	1	0	2	2	2	0	zinc-ribbon	domain
OrfB_Zn_ribbon	PF07282.11	gi|408402743|ref|YP_006860726.1|	-	2.8e-19	68.8	2.4	2.8e-19	68.8	2.4	1.7	2	0	0	2	2	2	1	Putative	transposase	DNA-binding	domain
HypA	PF01155.19	gi|408402743|ref|YP_006860726.1|	-	0.00013	22.0	1.9	0.00016	21.7	1.9	1.2	1	0	0	1	1	1	1	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
zf_UBZ	PF18439.1	gi|408402743|ref|YP_006860726.1|	-	0.0076	15.8	2.9	0.36	10.4	0.1	2.4	1	1	1	2	2	2	2	Ubiquitin-Binding	Zinc	Finger
Zn_ribbon_SprT	PF17283.2	gi|408402743|ref|YP_006860726.1|	-	0.011	15.6	4.0	0.011	15.6	4.0	2.0	2	0	0	2	2	2	0	SprT-like	zinc	ribbon	domain
DZR	PF12773.7	gi|408402743|ref|YP_006860726.1|	-	0.21	11.7	9.3	0.66	10.0	9.3	1.8	1	1	0	1	1	1	0	Double	zinc	ribbon
OrfB_IS605	PF01385.19	gi|408402744|ref|YP_006860727.1|	-	1.5e-08	34.9	0.0	2e-08	34.5	0.0	1.2	1	0	0	1	1	1	1	Probable	transposase
HTH_OrfB_IS605	PF12323.8	gi|408402745|ref|YP_006860728.1|	-	9.4e-11	41.0	0.2	1.2e-10	40.7	0.2	1.1	1	0	0	1	1	1	1	Helix-turn-helix	domain
Ribosomal_S19e	PF01090.19	gi|408402746|ref|YP_006860729.1|	-	1.5e-51	173.7	0.1	1.7e-51	173.5	0.1	1.0	1	0	0	1	1	1	1	Ribosomal	protein	S19e
GntR	PF00392.21	gi|408402746|ref|YP_006860729.1|	-	0.011	15.3	0.1	0.026	14.2	0.1	1.7	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	gntR	family
TBPIP	PF07106.13	gi|408402746|ref|YP_006860729.1|	-	0.2	11.6	0.6	1.5	8.9	0.1	2.2	2	0	0	2	2	2	0	TBPIP/Hop2	winged	helix	domain
dsDNA_bind	PF01984.20	gi|408402747|ref|YP_006860730.1|	-	7.8e-25	87.3	3.7	8.7e-25	87.2	3.7	1.0	1	0	0	1	1	1	1	Double-stranded	DNA-binding	domain
SF3b1	PF08920.10	gi|408402747|ref|YP_006860730.1|	-	0.16	12.5	0.4	0.22	12.0	0.2	1.6	1	1	0	1	1	1	0	Splicing	factor	3B	subunit	1
ADH_zinc_N	PF00107.26	gi|408402748|ref|YP_006860731.1|	-	1.2e-28	99.7	0.5	2.2e-28	98.9	0.2	1.6	2	0	0	2	2	2	1	Zinc-binding	dehydrogenase
ADH_N	PF08240.12	gi|408402748|ref|YP_006860731.1|	-	2e-25	88.8	0.0	4.1e-25	87.8	0.0	1.5	1	0	0	1	1	1	1	Alcohol	dehydrogenase	GroES-like	domain
ADH_zinc_N_2	PF13602.6	gi|408402748|ref|YP_006860731.1|	-	1.7e-16	61.5	0.0	3.2e-16	60.6	0.0	1.4	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
Methyltransf_16	PF10294.9	gi|408402748|ref|YP_006860731.1|	-	0.087	12.6	0.2	0.13	11.9	0.2	1.3	1	0	0	1	1	1	0	Lysine	methyltransferase
CMAS	PF02353.20	gi|408402748|ref|YP_006860731.1|	-	0.14	11.4	0.1	0.2	10.9	0.1	1.2	1	0	0	1	1	1	0	Mycolic	acid	cyclopropane	synthetase
HpcH_HpaI	PF03328.14	gi|408402749|ref|YP_006860732.1|	-	5.1e-50	169.7	1.0	6.6e-50	169.3	1.0	1.1	1	0	0	1	1	1	1	HpcH/HpaI	aldolase/citrate	lyase	family
C-C_Bond_Lyase	PF15617.6	gi|408402749|ref|YP_006860732.1|	-	1.6e-18	66.9	0.2	1.1e-08	34.7	0.1	2.1	1	1	1	2	2	2	2	C-C_Bond_Lyase	of	the	TIM-Barrel	fold
Na_H_Exchanger	PF00999.21	gi|408402750|ref|YP_006860733.1|	-	4.7e-56	190.2	52.1	5.5e-56	190.0	52.1	1.0	1	0	0	1	1	1	1	Sodium/hydrogen	exchanger	family
Tautomerase	PF01361.21	gi|408402751|ref|YP_006860734.1|	-	8.4e-15	54.4	0.1	9.5e-15	54.3	0.1	1.0	1	0	0	1	1	1	1	Tautomerase	enzyme
Tautomerase_2	PF14552.6	gi|408402751|ref|YP_006860734.1|	-	1.3e-11	44.5	0.2	1.4e-11	44.4	0.2	1.0	1	0	0	1	1	1	1	Tautomerase	enzyme
SBF	PF01758.16	gi|408402752|ref|YP_006860735.1|	-	7.3e-10	38.8	12.9	7.3e-10	38.8	12.9	1.8	2	0	0	2	2	2	1	Sodium	Bile	acid	symporter	family
Peptidase_M3	PF01432.20	gi|408402753|ref|YP_006860736.1|	-	2.4e-42	145.8	1.2	5e-42	144.7	1.2	1.5	1	1	0	1	1	1	1	Peptidase	family	M3
Peptidase_M3_N	PF08439.10	gi|408402753|ref|YP_006860736.1|	-	2.1e-06	27.9	0.0	2.4e-05	24.5	0.0	2.8	2	0	0	2	2	2	1	Oligopeptidase	F
Peptidase_M78	PF06114.13	gi|408402753|ref|YP_006860736.1|	-	0.082	12.8	0.0	0.2	11.6	0.0	1.7	1	0	0	1	1	1	0	IrrE	N-terminal-like	domain
Peptidase_M50B	PF13398.6	gi|408402753|ref|YP_006860736.1|	-	0.14	11.8	0.1	0.22	11.1	0.1	1.2	1	0	0	1	1	1	0	Peptidase	M50B-like
Mrr_cat	PF04471.12	gi|408402754|ref|YP_006860737.1|	-	0.012	15.6	0.0	0.017	15.2	0.0	1.1	1	0	0	1	1	1	0	Restriction	endonuclease
RDD	PF06271.12	gi|408402755|ref|YP_006860738.1|	-	2.2e-17	63.6	5.5	2.9e-17	63.2	5.5	1.2	1	0	0	1	1	1	1	RDD	family
AA_permease_2	PF13520.6	gi|408402756|ref|YP_006860739.1|	-	5.7e-52	177.0	55.0	7e-52	176.7	55.0	1.1	1	0	0	1	1	1	1	Amino	acid	permease
AA_permease	PF00324.21	gi|408402756|ref|YP_006860739.1|	-	2e-32	112.4	51.2	2.5e-32	112.1	51.2	1.0	1	0	0	1	1	1	1	Amino	acid	permease
Spore_permease	PF03845.13	gi|408402756|ref|YP_006860739.1|	-	7.3e-07	28.3	30.8	5.6e-05	22.1	17.3	2.6	1	1	1	2	2	2	2	Spore	germination	protein
SoxE	PF06525.11	gi|408402756|ref|YP_006860739.1|	-	0.3	10.5	3.4	0.5	9.8	1.2	2.2	2	0	0	2	2	2	0	Sulfocyanin	(SoxE)	domain
AA_permease_C	PF13906.6	gi|408402756|ref|YP_006860739.1|	-	0.97	9.6	0.0	0.97	9.6	0.0	5.8	9	0	0	9	9	9	0	C-terminus	of	AA_permease
CBS	PF00571.28	gi|408402757|ref|YP_006860740.1|	-	4e-25	88.0	3.3	7.1e-13	48.8	0.2	2.2	2	0	0	2	2	2	2	CBS	domain
BCIP	PF13862.6	gi|408402757|ref|YP_006860740.1|	-	0.097	12.4	0.5	7.6	6.2	0.0	2.1	1	1	1	2	2	2	0	p21-C-terminal	region-binding	protein
Dimer_Tnp_hAT	PF05699.14	gi|408402757|ref|YP_006860740.1|	-	0.12	12.2	0.1	0.2	11.4	0.1	1.3	1	0	0	1	1	1	0	hAT	family	C-terminal	dimerisation	region
CAP	PF00188.26	gi|408402758|ref|YP_006860741.1|	-	6.1e-06	27.1	0.0	1.4e-05	25.9	0.0	1.6	1	1	0	1	1	1	1	Cysteine-rich	secretory	protein	family
DUF2615	PF11027.8	gi|408402758|ref|YP_006860741.1|	-	0.11	12.6	0.0	0.2	11.8	0.0	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2615)
RMMBL	PF07521.12	gi|408402759|ref|YP_006860742.1|	-	8.7e-06	25.6	0.0	1.1e-05	25.2	0.0	1.2	1	0	0	1	1	1	1	Zn-dependent	metallo-hydrolase	RNA	specificity	domain
SAM_1	PF00536.30	gi|408402759|ref|YP_006860742.1|	-	0.042	14.3	0.1	0.11	12.9	0.1	1.8	1	1	0	1	1	1	0	SAM	domain	(Sterile	alpha	motif)
Lactamase_B_2	PF12706.7	gi|408402760|ref|YP_006860743.1|	-	1.2e-05	24.9	0.1	1.3e-05	24.8	0.1	1.1	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
Lactamase_B	PF00753.27	gi|408402760|ref|YP_006860743.1|	-	0.00063	19.8	0.0	0.00088	19.3	0.0	1.3	1	0	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Lactamase_B_3	PF13483.6	gi|408402760|ref|YP_006860743.1|	-	0.024	14.5	0.0	0.027	14.4	0.0	1.1	1	0	0	1	1	1	0	Beta-lactamase	superfamily	domain
UCR_Fe-S_N	PF10399.9	gi|408402762|ref|YP_006860745.1|	-	0.062	12.7	0.1	0.11	11.9	0.1	1.4	1	0	0	1	1	1	0	Ubiquitinol-cytochrome	C	reductase	Fe-S	subunit	TAT	signal
zf-TFIIB	PF13453.6	gi|408402763|ref|YP_006860746.1|	-	0.0026	17.0	0.8	0.0036	16.6	0.8	1.2	1	0	0	1	1	1	1	Transcription	factor	zinc-finger
zf-ACC	PF17848.1	gi|408402763|ref|YP_006860746.1|	-	0.018	15.1	0.9	2.5	8.3	0.0	2.1	2	0	0	2	2	2	0	Acetyl-coA	carboxylase	zinc	finger	domain
Elf1	PF05129.13	gi|408402763|ref|YP_006860746.1|	-	0.025	14.6	0.1	0.027	14.5	0.1	1.1	1	0	0	1	1	1	0	Transcription	elongation	factor	Elf1	like
Zn_Tnp_IS1595	PF12760.7	gi|408402763|ref|YP_006860746.1|	-	0.025	14.5	0.0	0.033	14.2	0.0	1.2	1	0	0	1	1	1	0	Transposase	zinc-ribbon	domain
zinc-ribbons_6	PF07191.12	gi|408402763|ref|YP_006860746.1|	-	0.033	14.2	0.3	0.049	13.6	0.3	1.4	1	1	0	1	1	1	0	zinc-ribbons
Zn_ribbon_recom	PF13408.6	gi|408402763|ref|YP_006860746.1|	-	0.07	13.7	0.3	0.1	13.1	0.3	1.4	1	1	0	1	1	1	0	Recombinase	zinc	beta	ribbon	domain
DUF1610	PF07754.11	gi|408402763|ref|YP_006860746.1|	-	0.3	11.1	0.1	0.3	11.1	0.1	2.1	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF1610)
GTP_cyclohydroI	PF01227.22	gi|408402764|ref|YP_006860747.1|	-	2.5e-63	212.8	0.2	2.9e-63	212.5	0.2	1.0	1	0	0	1	1	1	1	GTP	cyclohydrolase	I
QueF	PF14489.6	gi|408402764|ref|YP_006860747.1|	-	0.0022	18.1	0.0	0.0053	16.9	0.0	1.6	2	0	0	2	2	2	1	QueF-like	protein
OST-HTH	PF12872.7	gi|408402764|ref|YP_006860747.1|	-	0.052	13.4	0.1	1.3	8.8	0.0	2.1	2	0	0	2	2	2	0	OST-HTH/LOTUS	domain
Fer4_12	PF13353.6	gi|408402765|ref|YP_006860748.1|	-	1.2e-13	51.5	0.0	2.4e-13	50.5	0.0	1.5	2	0	0	2	2	2	1	4Fe-4S	single	cluster	domain
Radical_SAM	PF04055.21	gi|408402765|ref|YP_006860748.1|	-	1e-12	48.8	0.0	1.3e-12	48.5	0.0	1.1	1	0	0	1	1	1	1	Radical	SAM	superfamily
Fer4_14	PF13394.6	gi|408402765|ref|YP_006860748.1|	-	2.1e-11	44.0	0.0	3.4e-11	43.3	0.0	1.4	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
QueC	PF06508.13	gi|408402766|ref|YP_006860749.1|	-	1.4e-50	171.7	0.1	1.7e-50	171.5	0.1	1.0	1	0	0	1	1	1	1	Queuosine	biosynthesis	protein	QueC
ThiI	PF02568.14	gi|408402766|ref|YP_006860749.1|	-	0.012	15.3	0.0	0.019	14.5	0.0	1.4	1	0	0	1	1	1	0	Thiamine	biosynthesis	protein	(ThiI)
ApbA_C	PF08546.11	gi|408402766|ref|YP_006860749.1|	-	0.037	14.2	0.0	0.066	13.4	0.0	1.4	1	0	0	1	1	1	0	Ketopantoate	reductase	PanE/ApbA	C	terminal
Asn_synthase	PF00733.21	gi|408402766|ref|YP_006860749.1|	-	0.04	13.6	0.0	0.056	13.1	0.0	1.2	1	0	0	1	1	1	0	Asparagine	synthase
Viral_P18	PF04521.13	gi|408402766|ref|YP_006860749.1|	-	0.11	12.2	0.2	0.47	10.3	0.2	1.9	1	1	0	1	1	1	0	ssRNA	positive	strand	viral	18kD	cysteine	rich	protein
Cupin_5	PF06172.11	gi|408402767|ref|YP_006860750.1|	-	2.5e-42	144.4	0.0	2.8e-42	144.2	0.0	1.0	1	0	0	1	1	1	1	Cupin	superfamily	(DUF985)
DUF1155	PF06633.11	gi|408402767|ref|YP_006860750.1|	-	0.14	11.7	0.0	0.32	10.5	0.0	1.6	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1155)
MMR_HSR1_C	PF08438.10	gi|408402768|ref|YP_006860751.1|	-	2e-30	105.7	0.1	3.2e-30	105.0	0.1	1.3	1	0	0	1	1	1	1	GTPase	of	unknown	function	C-terminal
MMR_HSR1	PF01926.23	gi|408402768|ref|YP_006860751.1|	-	3.5e-21	75.4	0.0	4.3e-20	71.9	0.0	2.5	3	0	0	3	3	3	1	50S	ribosome-binding	GTPase
TGS	PF02824.21	gi|408402768|ref|YP_006860751.1|	-	1.8e-14	53.5	0.1	1.3e-13	50.8	0.1	2.2	2	0	0	2	2	2	1	TGS	domain
FeoB_N	PF02421.18	gi|408402768|ref|YP_006860751.1|	-	3.1e-07	30.1	0.2	3.1e-06	26.8	0.0	2.5	3	0	0	3	3	3	1	Ferrous	iron	transport	protein	B
YchF-GTPase_C	PF06071.13	gi|408402768|ref|YP_006860751.1|	-	0.0079	16.4	0.0	0.032	14.4	0.0	2.0	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF933)
AAA_29	PF13555.6	gi|408402768|ref|YP_006860751.1|	-	0.024	14.4	0.0	0.049	13.4	0.0	1.5	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
ATP_bind_1	PF03029.17	gi|408402768|ref|YP_006860751.1|	-	0.032	14.0	0.0	2.6	7.8	0.0	2.2	2	0	0	2	2	2	0	Conserved	hypothetical	ATP	binding	protein
VF530	PF09905.9	gi|408402768|ref|YP_006860751.1|	-	0.039	14.1	0.0	0.099	12.8	0.0	1.6	1	0	0	1	1	1	0	DNA-binding	protein	VF530
UPF0181	PF03701.14	gi|408402768|ref|YP_006860751.1|	-	0.11	12.2	0.2	0.5	10.0	0.1	2.0	2	0	0	2	2	2	0	Uncharacterised	protein	family	(UPF0181)
ThiS	PF02597.20	gi|408402768|ref|YP_006860751.1|	-	0.11	13.1	0.0	0.53	11.0	0.0	2.1	2	0	0	2	2	2	0	ThiS	family
SicP-binding	PF09119.10	gi|408402768|ref|YP_006860751.1|	-	0.14	12.1	0.0	0.38	10.8	0.0	1.6	1	0	0	1	1	1	0	SicP	binding
Peptidase_M22	PF00814.25	gi|408402769|ref|YP_006860752.1|	-	5.3e-77	259.2	0.1	6.3e-77	258.9	0.1	1.0	1	0	0	1	1	1	1	Glycoprotease	family
BRCA-2_OB1	PF09103.10	gi|408402769|ref|YP_006860752.1|	-	0.02	14.9	0.0	0.26	11.2	0.0	2.2	1	1	0	1	1	1	0	BRCA2,	oligonucleotide/oligosaccharide-binding,	domain	1
Flg_hook	PF02120.16	gi|408402769|ref|YP_006860752.1|	-	0.12	12.3	0.0	0.38	10.7	0.0	1.8	2	0	0	2	2	2	0	Flagellar	hook-length	control	protein	FliK
bPH_3	PF14470.6	gi|408402770|ref|YP_006860753.1|	-	1.3e-05	25.5	0.1	2.6e-05	24.5	0.1	1.5	1	1	0	1	1	1	1	Bacterial	PH	domain
GRAM	PF02893.20	gi|408402770|ref|YP_006860753.1|	-	0.00024	20.9	0.0	0.00029	20.7	0.0	1.1	1	0	0	1	1	1	1	GRAM	domain
Pkinase	PF00069.25	gi|408402771|ref|YP_006860754.1|	-	5e-08	32.6	0.1	8.1e-08	31.9	0.1	1.4	1	1	0	1	1	1	1	Protein	kinase	domain
APH	PF01636.23	gi|408402771|ref|YP_006860754.1|	-	1.6e-07	31.5	0.0	0.017	15.1	0.0	2.1	1	1	1	2	2	2	2	Phosphotransferase	enzyme	family
RIO1	PF01163.22	gi|408402771|ref|YP_006860754.1|	-	1.6e-05	24.6	0.2	3.4e-05	23.5	0.2	1.5	1	1	0	1	1	1	1	RIO1	family
Pkinase_Tyr	PF07714.17	gi|408402771|ref|YP_006860754.1|	-	2.2e-05	23.9	0.1	5e-05	22.7	0.1	1.6	1	1	0	1	1	1	1	Protein	tyrosine	kinase
Choline_kinase	PF01633.20	gi|408402771|ref|YP_006860754.1|	-	0.00049	19.8	0.0	0.00062	19.4	0.0	1.3	1	0	0	1	1	1	1	Choline/ethanolamine	kinase
Kdo	PF06293.14	gi|408402771|ref|YP_006860754.1|	-	0.00092	18.6	0.0	0.0024	17.3	0.0	1.7	1	1	1	2	2	2	1	Lipopolysaccharide	kinase	(Kdo/WaaP)	family
Kinase-like	PF14531.6	gi|408402771|ref|YP_006860754.1|	-	0.017	14.4	0.0	0.09	12.1	0.0	2.0	1	1	1	2	2	2	0	Kinase-like
EcKinase	PF02958.20	gi|408402771|ref|YP_006860754.1|	-	0.025	13.9	0.0	0.027	13.8	0.0	1.2	1	0	0	1	1	1	0	Ecdysteroid	kinase
Fructosamin_kin	PF03881.14	gi|408402771|ref|YP_006860754.1|	-	0.04	13.1	0.0	0.059	12.6	0.0	1.3	1	0	0	1	1	1	0	Fructosamine	kinase
Ham1p_like	PF01725.16	gi|408402772|ref|YP_006860755.1|	-	1.9e-45	155.1	0.0	2.1e-45	154.9	0.0	1.0	1	0	0	1	1	1	1	Ham1	family
Radical_SAM	PF04055.21	gi|408402773|ref|YP_006860756.1|	-	7e-20	72.1	0.0	2.7e-19	70.2	0.0	1.9	1	1	0	1	1	1	1	Radical	SAM	superfamily
Wyosine_form	PF08608.12	gi|408402773|ref|YP_006860756.1|	-	3.1e-19	69.1	0.1	7e-19	67.9	0.1	1.6	1	0	0	1	1	1	1	Wyosine	base	formation
Fer4_14	PF13394.6	gi|408402773|ref|YP_006860756.1|	-	0.022	14.9	0.2	0.93	9.6	0.2	2.8	1	1	0	1	1	1	0	4Fe-4S	single	cluster	domain
NIF3	PF01784.18	gi|408402774|ref|YP_006860757.1|	-	6.5e-06	25.9	1.5	0.0003	20.5	1.5	2.3	1	1	0	1	1	1	1	NIF3	(NGG1p	interacting	factor	3)
PALP	PF00291.25	gi|408402775|ref|YP_006860758.1|	-	7.1e-25	88.0	0.1	4.5e-23	82.1	0.1	3.0	2	1	0	2	2	2	1	Pyridoxal-phosphate	dependent	enzyme
MG2	PF01835.19	gi|408402776|ref|YP_006860759.1|	-	7.2e-06	26.4	0.1	2.7e-05	24.5	0.1	2.0	2	0	0	2	2	2	1	MG2	domain
M20_dimer	PF07687.14	gi|408402776|ref|YP_006860759.1|	-	0.00064	19.6	0.0	0.19	11.6	0.0	2.3	2	0	0	2	2	2	2	Peptidase	dimerisation	domain
Malectin	PF11721.8	gi|408402776|ref|YP_006860759.1|	-	0.00077	19.6	0.0	0.014	15.5	0.0	2.2	2	0	0	2	2	2	1	Malectin	domain
FlgD_ig	PF13860.6	gi|408402776|ref|YP_006860759.1|	-	0.00083	19.2	0.2	0.0044	16.8	0.0	2.3	2	0	0	2	2	2	1	FlgD	Ig-like	domain
A2M_BRD	PF07703.14	gi|408402776|ref|YP_006860759.1|	-	0.0052	17.1	0.0	0.0085	16.4	0.0	1.4	1	0	0	1	1	1	1	Alpha-2-macroglobulin	bait	region	domain
BAT	PF15915.5	gi|408402776|ref|YP_006860759.1|	-	0.0064	16.4	0.8	0.6	10.0	0.1	2.3	2	0	0	2	2	2	1	GAF	and	HTH_10	associated	domain
EMP24_GP25L	PF01105.24	gi|408402776|ref|YP_006860759.1|	-	0.01	15.8	0.0	1.9	8.4	0.0	2.3	1	1	1	2	2	2	0	emp24/gp25L/p24	family/GOLD
Big_3_5	PF16640.5	gi|408402776|ref|YP_006860759.1|	-	0.022	14.9	2.0	0.022	14.9	2.0	3.1	1	1	1	2	2	2	0	Bacterial	Ig-like	domain	(group	3)
DUF1735	PF08522.10	gi|408402776|ref|YP_006860759.1|	-	0.062	13.9	0.2	0.19	12.3	0.1	1.9	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF1735)
Polyketide_cyc2	PF10604.9	gi|408402776|ref|YP_006860759.1|	-	0.11	12.7	1.6	2.5	8.3	0.2	2.7	1	1	1	3	3	3	0	Polyketide	cyclase	/	dehydrase	and	lipid	transport
FctA	PF12892.7	gi|408402776|ref|YP_006860759.1|	-	0.29	12.0	4.4	0.57	11.0	3.2	2.3	1	1	0	1	1	1	0	Spy0128-like	isopeptide	containing	domain
RNA_pol_Rpb5_C	PF01191.19	gi|408402777|ref|YP_006860760.1|	-	3.2e-28	97.4	0.7	3.8e-28	97.2	0.7	1.0	1	0	0	1	1	1	1	RNA	polymerase	Rpb5,	C-terminal	domain
CDC48_N	PF02359.18	gi|408402777|ref|YP_006860760.1|	-	0.013	15.7	0.0	0.017	15.2	0.0	1.3	1	0	0	1	1	1	0	Cell	division	protein	48	(CDC48),	N-terminal	domain
RNA_pol_Rpb2_6	PF00562.28	gi|408402778|ref|YP_006860761.1|	-	5.6e-124	414.2	0.3	8.3e-124	413.6	0.3	1.3	1	0	0	1	1	1	1	RNA	polymerase	Rpb2,	domain	6
RNA_pol_Rpb2_1	PF04563.15	gi|408402778|ref|YP_006860761.1|	-	2.5e-47	161.0	0.0	4.6e-47	160.2	0.0	1.4	1	0	0	1	1	1	1	RNA	polymerase	beta	subunit
RNA_pol_Rpb2_7	PF04560.20	gi|408402778|ref|YP_006860761.1|	-	1e-32	112.4	0.4	2.2e-32	111.3	0.4	1.6	1	0	0	1	1	1	1	RNA	polymerase	Rpb2,	domain	7
RNA_pol_Rpb2_3	PF04565.16	gi|408402778|ref|YP_006860761.1|	-	2.2e-28	98.2	0.1	4.5e-28	97.2	0.1	1.6	1	0	0	1	1	1	1	RNA	polymerase	Rpb2,	domain	3
RNA_pol_Rpb2_2	PF04561.14	gi|408402778|ref|YP_006860761.1|	-	6.2e-22	78.2	0.0	1.2e-21	77.3	0.0	1.4	1	0	0	1	1	1	1	RNA	polymerase	Rpb2,	domain	2
RNA_pol_Rpb2_4	PF04566.13	gi|408402778|ref|YP_006860761.1|	-	8.4e-19	67.6	0.2	1.9e-18	66.5	0.2	1.7	1	0	0	1	1	1	1	RNA	polymerase	Rpb2,	domain	4
RNA_pol_Rpb2_5	PF04567.17	gi|408402778|ref|YP_006860761.1|	-	7.5e-09	36.0	0.0	2.2e-08	34.5	0.0	1.9	1	0	0	1	1	1	1	RNA	polymerase	Rpb2,	domain	5
DUF2318	PF10080.9	gi|408402778|ref|YP_006860761.1|	-	0.037	14.1	0.4	0.08	13.1	0.4	1.5	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2318)
FYVE	PF01363.21	gi|408402778|ref|YP_006860761.1|	-	0.042	14.0	0.4	0.08	13.1	0.4	1.4	1	0	0	1	1	1	0	FYVE	zinc	finger
FYVE_2	PF02318.16	gi|408402778|ref|YP_006860761.1|	-	0.12	12.6	0.1	0.24	11.6	0.1	1.4	1	0	0	1	1	1	0	FYVE-type	zinc	finger
Zn_Tnp_IS1595	PF12760.7	gi|408402778|ref|YP_006860761.1|	-	0.17	11.9	0.2	0.37	10.8	0.2	1.5	1	0	0	1	1	1	0	Transposase	zinc-ribbon	domain
OrfB_Zn_ribbon	PF07282.11	gi|408402778|ref|YP_006860761.1|	-	0.74	9.8	2.1	1.1	9.2	1.1	1.8	2	0	0	2	2	1	0	Putative	transposase	DNA-binding	domain
RNA_pol_Rpb1_1	PF04997.12	gi|408402779|ref|YP_006860762.1|	-	6.9e-94	314.7	0.0	1.3e-93	313.7	0.0	1.5	2	0	0	2	2	2	1	RNA	polymerase	Rpb1,	domain	1
RNA_pol_Rpb1_5	PF04998.17	gi|408402779|ref|YP_006860762.1|	-	2.2e-87	292.9	0.7	4.8e-87	291.8	0.7	1.6	1	0	0	1	1	1	1	RNA	polymerase	Rpb1,	domain	5
RNA_pol_Rpb1_2	PF00623.20	gi|408402779|ref|YP_006860762.1|	-	5.7e-74	247.8	0.0	1e-73	247.1	0.0	1.4	1	0	0	1	1	1	1	RNA	polymerase	Rpb1,	domain	2
RNA_pol_Rpb1_3	PF04983.18	gi|408402779|ref|YP_006860762.1|	-	3.5e-35	121.3	0.0	1.4e-34	119.4	0.0	2.0	2	0	0	2	2	2	1	RNA	polymerase	Rpb1,	domain	3
RNA_pol_Rpb1_4	PF05000.17	gi|408402779|ref|YP_006860762.1|	-	4.2e-24	84.6	0.3	1.4e-23	82.8	0.0	2.2	2	1	0	2	2	2	1	RNA	polymerase	Rpb1,	domain	4
Bystin	PF05291.11	gi|408402779|ref|YP_006860762.1|	-	0.1	11.9	0.0	1.7	7.9	0.1	2.6	2	1	1	3	3	3	0	Bystin
NAC	PF01849.18	gi|408402779|ref|YP_006860762.1|	-	0.14	12.2	0.1	0.41	10.6	0.1	1.8	1	0	0	1	1	1	0	NAC	domain
Ribosomal_L7Ae	PF01248.26	gi|408402780|ref|YP_006860763.1|	-	1.8e-11	43.6	2.2	2.1e-11	43.4	2.2	1.1	1	0	0	1	1	1	1	Ribosomal	protein	L7Ae/L30e/S12e/Gadd45	family
KH_2	PF07650.17	gi|408402781|ref|YP_006860764.1|	-	5.1e-22	77.5	1.3	1.2e-14	53.9	0.1	2.1	2	0	0	2	2	2	2	KH	domain
KH_5	PF13184.6	gi|408402781|ref|YP_006860764.1|	-	2.2e-11	43.7	4.2	1.8e-09	37.6	0.6	2.3	2	0	0	2	2	2	2	NusA-like	KH	domain
KH_4	PF13083.6	gi|408402781|ref|YP_006860764.1|	-	2.2e-11	43.4	1.5	2.2e-05	24.2	0.1	2.3	2	0	0	2	2	2	2	KH	domain
KH_1	PF00013.29	gi|408402781|ref|YP_006860764.1|	-	7.8e-07	28.8	3.1	9.7e-05	22.1	0.2	2.8	2	1	1	3	3	3	2	KH	domain
Ribosom_S12_S23	PF00164.25	gi|408402782|ref|YP_006860765.1|	-	2.1e-48	162.7	0.1	2.6e-48	162.4	0.1	1.1	1	0	0	1	1	1	1	Ribosomal	protein	S12/S23
Ribosomal_S7	PF00177.21	gi|408402783|ref|YP_006860766.1|	-	8.9e-39	132.5	1.9	1.4e-38	131.8	1.9	1.3	1	0	0	1	1	1	1	Ribosomal	protein	S7p/S5e
AAA	PF00004.29	gi|408402785|ref|YP_006860768.1|	-	3.9e-17	62.9	0.2	3.2e-16	60.0	0.0	2.3	2	1	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_16	PF13191.6	gi|408402785|ref|YP_006860768.1|	-	1.2e-06	29.1	0.0	9.3e-05	22.9	0.0	2.5	1	1	1	2	2	2	1	AAA	ATPase	domain
AAA_14	PF13173.6	gi|408402785|ref|YP_006860768.1|	-	2.1e-06	27.8	0.0	5.5e-06	26.5	0.0	1.7	1	1	1	2	2	2	1	AAA	domain
AAA_22	PF13401.6	gi|408402785|ref|YP_006860768.1|	-	2.2e-06	28.0	0.0	8.2e-05	22.9	0.0	2.8	2	1	0	2	2	2	1	AAA	domain
AAA_5	PF07728.14	gi|408402785|ref|YP_006860768.1|	-	3.2e-06	27.2	0.0	1.2e-05	25.3	0.0	1.8	1	1	0	1	1	1	1	AAA	domain	(dynein-related	subfamily)
AAA_7	PF12775.7	gi|408402785|ref|YP_006860768.1|	-	3.3e-05	23.5	0.0	6.6e-05	22.5	0.0	1.5	1	0	0	1	1	1	1	P-loop	containing	dynein	motor	region
Rad17	PF03215.15	gi|408402785|ref|YP_006860768.1|	-	6.5e-05	22.9	0.0	0.00014	21.8	0.0	1.7	1	0	0	1	1	1	1	Rad17	P-loop	domain
AAA_33	PF13671.6	gi|408402785|ref|YP_006860768.1|	-	0.00012	22.2	0.0	0.00025	21.2	0.0	1.5	1	0	0	1	1	1	1	AAA	domain
AAA_25	PF13481.6	gi|408402785|ref|YP_006860768.1|	-	0.00016	21.3	0.8	0.00024	20.7	0.1	1.7	2	0	0	2	2	1	1	AAA	domain
ABC_tran	PF00005.27	gi|408402785|ref|YP_006860768.1|	-	0.00024	21.6	0.0	0.00051	20.6	0.0	1.6	1	0	0	1	1	1	1	ABC	transporter
AAA_18	PF13238.6	gi|408402785|ref|YP_006860768.1|	-	0.0003	21.3	0.0	0.00059	20.4	0.0	1.5	1	0	0	1	1	1	1	AAA	domain
RuvB_N	PF05496.12	gi|408402785|ref|YP_006860768.1|	-	0.00033	20.5	0.0	0.00094	19.0	0.0	1.9	1	0	0	1	1	1	1	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
IstB_IS21	PF01695.17	gi|408402785|ref|YP_006860768.1|	-	0.00059	19.6	0.0	0.0011	18.7	0.0	1.4	1	0	0	1	1	1	1	IstB-like	ATP	binding	protein
AAA_28	PF13521.6	gi|408402785|ref|YP_006860768.1|	-	0.00074	19.8	0.0	0.0015	18.8	0.0	1.5	1	0	0	1	1	1	1	AAA	domain
AAA_30	PF13604.6	gi|408402785|ref|YP_006860768.1|	-	0.0013	18.5	0.0	0.0028	17.4	0.0	1.5	1	0	0	1	1	1	1	AAA	domain
TIP49	PF06068.13	gi|408402785|ref|YP_006860768.1|	-	0.0015	17.8	0.0	0.0085	15.3	0.0	2.1	2	1	0	2	2	2	1	TIP49	P-loop	domain
Mg_chelatase	PF01078.21	gi|408402785|ref|YP_006860768.1|	-	0.0018	17.7	0.0	0.0058	16.0	0.0	1.8	2	0	0	2	2	1	1	Magnesium	chelatase,	subunit	ChlI
RsgA_GTPase	PF03193.16	gi|408402785|ref|YP_006860768.1|	-	0.0029	17.5	0.0	0.039	13.9	0.0	2.3	1	1	0	2	2	2	1	RsgA	GTPase
AAA_11	PF13086.6	gi|408402785|ref|YP_006860768.1|	-	0.0037	17.1	0.0	0.0065	16.3	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
RNA_helicase	PF00910.22	gi|408402785|ref|YP_006860768.1|	-	0.0068	16.8	0.0	0.023	15.1	0.0	2.0	1	1	0	1	1	1	1	RNA	helicase
AAA_8	PF12780.7	gi|408402785|ref|YP_006860768.1|	-	0.007	15.7	0.0	0.014	14.8	0.0	1.4	1	0	0	1	1	1	1	P-loop	containing	dynein	motor	region	D4
AAA_19	PF13245.6	gi|408402785|ref|YP_006860768.1|	-	0.0074	16.6	0.1	0.023	15.0	0.1	1.8	1	1	1	2	2	2	1	AAA	domain
AAA_2	PF07724.14	gi|408402785|ref|YP_006860768.1|	-	0.0086	16.2	0.0	0.034	14.3	0.0	1.9	2	0	0	2	2	1	1	AAA	domain	(Cdc48	subfamily)
AAA_17	PF13207.6	gi|408402785|ref|YP_006860768.1|	-	0.011	16.2	0.0	0.027	14.9	0.0	1.7	1	0	0	1	1	1	0	AAA	domain
NACHT	PF05729.12	gi|408402785|ref|YP_006860768.1|	-	0.012	15.5	0.0	0.061	13.2	0.0	2.1	2	0	0	2	2	2	0	NACHT	domain
AAA_3	PF07726.11	gi|408402785|ref|YP_006860768.1|	-	0.014	15.3	0.0	0.03	14.2	0.0	1.6	1	0	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
TsaE	PF02367.17	gi|408402785|ref|YP_006860768.1|	-	0.015	15.3	0.0	0.027	14.5	0.0	1.3	1	0	0	1	1	1	0	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
Ploopntkinase3	PF18751.1	gi|408402785|ref|YP_006860768.1|	-	0.016	15.1	0.0	0.054	13.4	0.0	1.9	2	0	0	2	2	1	0	P-loop	Nucleotide	Kinase3
DUF815	PF05673.13	gi|408402785|ref|YP_006860768.1|	-	0.018	14.2	0.0	0.042	13.0	0.0	1.6	2	0	0	2	2	1	0	Protein	of	unknown	function	(DUF815)
T2SSE	PF00437.20	gi|408402785|ref|YP_006860768.1|	-	0.019	14.0	0.0	0.036	13.1	0.0	1.4	1	0	0	1	1	1	0	Type	II/IV	secretion	system	protein
CbiA	PF01656.23	gi|408402785|ref|YP_006860768.1|	-	0.04	14.0	0.0	0.3	11.1	0.0	2.1	1	1	0	1	1	1	0	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
AAA_29	PF13555.6	gi|408402785|ref|YP_006860768.1|	-	0.046	13.5	0.0	0.092	12.5	0.0	1.5	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
NTPase_1	PF03266.15	gi|408402785|ref|YP_006860768.1|	-	0.046	13.6	0.0	0.1	12.5	0.0	1.6	1	0	0	1	1	1	0	NTPase
Zeta_toxin	PF06414.12	gi|408402785|ref|YP_006860768.1|	-	0.065	12.5	0.0	0.11	11.7	0.0	1.3	1	0	0	1	1	1	0	Zeta	toxin
AAA_24	PF13479.6	gi|408402785|ref|YP_006860768.1|	-	0.079	12.7	0.0	0.15	11.8	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
TniB	PF05621.11	gi|408402785|ref|YP_006860768.1|	-	0.082	12.3	0.0	0.32	10.4	0.0	1.9	1	1	1	2	2	2	0	Bacterial	TniB	protein
Bac_DnaA	PF00308.18	gi|408402785|ref|YP_006860768.1|	-	0.094	12.5	0.0	0.17	11.7	0.0	1.4	1	0	0	1	1	1	0	Bacterial	dnaA	protein
Sigma54_activ_2	PF14532.6	gi|408402785|ref|YP_006860768.1|	-	0.1	12.7	0.0	0.19	11.8	0.0	1.5	1	0	0	1	1	1	0	Sigma-54	interaction	domain
Sigma54_activat	PF00158.26	gi|408402785|ref|YP_006860768.1|	-	0.12	12.1	0.0	0.43	10.2	0.0	1.9	2	0	0	2	2	2	0	Sigma-54	interaction	domain
cobW	PF02492.19	gi|408402785|ref|YP_006860768.1|	-	0.12	11.9	0.0	0.26	10.9	0.0	1.5	1	0	0	1	1	1	0	CobW/HypB/UreG,	nucleotide-binding	domain
ATPase_2	PF01637.18	gi|408402785|ref|YP_006860768.1|	-	0.13	12.2	0.0	0.73	9.7	0.0	2.0	1	1	1	2	2	2	0	ATPase	domain	predominantly	from	Archaea
SRP54	PF00448.22	gi|408402785|ref|YP_006860768.1|	-	0.13	11.9	0.0	0.26	10.9	0.0	1.5	1	0	0	1	1	1	0	SRP54-type	protein,	GTPase	domain
MMR_HSR1	PF01926.23	gi|408402785|ref|YP_006860768.1|	-	0.14	12.2	0.0	0.35	11.0	0.0	1.7	1	0	0	1	1	1	0	50S	ribosome-binding	GTPase
AAA_6	PF12774.7	gi|408402785|ref|YP_006860768.1|	-	0.16	10.9	0.0	0.37	9.7	0.0	1.6	2	0	0	2	2	1	0	Hydrolytic	ATP	binding	site	of	dynein	motor	region
FAM35_C	PF15793.5	gi|408402786|ref|YP_006860769.1|	-	0.0048	16.3	4.1	0.038	13.4	2.3	2.0	2	0	0	2	2	2	1	Protein	family	FAM35,	C-terminal
C1_1	PF00130.22	gi|408402786|ref|YP_006860769.1|	-	0.05	13.5	0.2	0.05	13.5	0.2	2.6	2	1	0	2	2	2	0	Phorbol	esters/diacylglycerol	binding	domain	(C1	domain)
zf_UBZ	PF18439.1	gi|408402786|ref|YP_006860769.1|	-	0.16	11.6	0.2	0.16	11.6	0.2	3.5	4	0	0	4	4	4	0	Ubiquitin-Binding	Zinc	Finger
zinc_ribbon_2	PF13240.6	gi|408402786|ref|YP_006860769.1|	-	0.25	11.1	0.4	0.25	11.1	0.4	3.7	3	1	0	3	3	3	0	zinc-ribbon	domain
zf-dskA_traR	PF01258.17	gi|408402786|ref|YP_006860769.1|	-	0.26	11.2	0.4	0.26	11.2	0.4	3.2	3	1	0	3	3	3	0	Prokaryotic	dksA/traR	C4-type	zinc	finger
UPF0167	PF03691.14	gi|408402786|ref|YP_006860769.1|	-	0.43	10.4	10.2	0.07	12.9	5.5	1.9	2	0	0	2	2	2	0	Uncharacterised	protein	family	(UPF0167)
DUF3472	PF11958.8	gi|408402787|ref|YP_006860770.1|	-	0.018	15.5	0.0	0.021	15.3	0.0	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3472)
DUF308	PF03729.13	gi|408402790|ref|YP_006860773.1|	-	0.82	10.0	19.1	0.15	12.4	11.6	2.2	2	0	0	2	2	2	0	Short	repeat	of	unknown	function	(DUF308)
CBS	PF00571.28	gi|408402793|ref|YP_006860776.1|	-	2.5e-24	85.5	8.1	7.5e-14	51.9	0.8	2.5	2	1	1	3	3	3	2	CBS	domain
IF3_N	PF05198.16	gi|408402793|ref|YP_006860776.1|	-	0.059	13.7	0.7	7.4	6.9	0.1	2.4	2	0	0	2	2	2	0	Translation	initiation	factor	IF-3,	N-terminal	domain
zf-C2H2_6	PF13912.6	gi|408402794|ref|YP_006860777.1|	-	6.2e-05	22.9	0.1	7.5e-05	22.6	0.1	1.1	1	0	0	1	1	1	1	C2H2-type	zinc	finger
zf-met	PF12874.7	gi|408402794|ref|YP_006860777.1|	-	0.00019	21.7	0.1	0.00026	21.3	0.1	1.2	1	0	0	1	1	1	1	Zinc-finger	of	C2H2	type
zf-C2H2_jaz	PF12171.8	gi|408402794|ref|YP_006860777.1|	-	0.00022	21.4	0.1	0.00031	20.9	0.1	1.3	1	0	0	1	1	1	1	Zinc-finger	double-stranded	RNA-binding
zf-C2H2	PF00096.26	gi|408402794|ref|YP_006860777.1|	-	0.00027	21.2	0.2	0.00036	20.8	0.2	1.2	1	0	0	1	1	1	1	Zinc	finger,	C2H2	type
zf-C2H2_4	PF13894.6	gi|408402794|ref|YP_006860777.1|	-	0.01	16.6	0.2	0.014	16.1	0.2	1.2	1	0	0	1	1	1	0	C2H2-type	zinc	finger
zf_UBZ	PF18439.1	gi|408402794|ref|YP_006860777.1|	-	0.021	14.4	0.1	0.03	13.9	0.1	1.2	1	0	0	1	1	1	0	Ubiquitin-Binding	Zinc	Finger
zf-C2H2_11	PF16622.5	gi|408402794|ref|YP_006860777.1|	-	0.022	14.5	0.0	0.03	14.1	0.0	1.1	1	0	0	1	1	1	0	zinc-finger	C2H2-type
PRP21_like_P	PF12230.8	gi|408402794|ref|YP_006860777.1|	-	0.042	13.7	0.2	0.048	13.5	0.2	1.1	1	0	0	1	1	1	0	Pre-mRNA	splicing	factor	PRP21	like	protein
KGG	PF10685.9	gi|408402795|ref|YP_006860778.1|	-	7.9e-13	48.2	38.5	0.00055	20.1	0.9	5.7	4	2	2	6	6	6	5	Stress-induced	bacterial	acidophilic	repeat	motif
LEA_5	PF00477.17	gi|408402795|ref|YP_006860778.1|	-	3.3e-05	24.3	3.2	3.3e-05	24.3	3.2	2.7	1	1	1	2	2	2	1	Small	hydrophilic	plant	seed	protein
WYL	PF13280.6	gi|408402796|ref|YP_006860779.1|	-	0.00031	20.9	0.1	0.0025	17.9	0.0	1.9	2	0	0	2	2	2	1	WYL	domain
zf-C2H2	PF00096.26	gi|408402796|ref|YP_006860779.1|	-	0.0015	18.9	0.2	0.0026	18.1	0.2	1.4	1	0	0	1	1	1	1	Zinc	finger,	C2H2	type
zf-C2H2_4	PF13894.6	gi|408402796|ref|YP_006860779.1|	-	0.0047	17.7	0.2	0.01	16.6	0.2	1.6	1	0	0	1	1	1	1	C2H2-type	zinc	finger
zf-met	PF12874.7	gi|408402796|ref|YP_006860779.1|	-	0.055	13.9	0.0	0.1	13.0	0.0	1.5	1	0	0	1	1	1	0	Zinc-finger	of	C2H2	type
DNA_RNApol_7kD	PF03604.13	gi|408402796|ref|YP_006860779.1|	-	0.072	12.8	0.2	0.14	11.8	0.2	1.4	1	0	0	1	1	1	0	DNA	directed	RNA	polymerase,	7	kDa	subunit
Eapp_C	PF10238.9	gi|408402796|ref|YP_006860779.1|	-	0.13	12.4	1.0	0.19	11.8	1.0	1.2	1	0	0	1	1	1	0	E2F-associated	phosphoprotein
zf-C2H2_11	PF16622.5	gi|408402796|ref|YP_006860779.1|	-	0.18	11.6	0.0	0.31	10.8	0.0	1.4	1	0	0	1	1	1	0	zinc-finger	C2H2-type
Ribosomal_L27_C	PF18471.1	gi|408402797|ref|YP_006860780.1|	-	0.011	15.1	0.3	1.1	8.7	0.1	2.1	2	0	0	2	2	2	0	Ribosomal	L27	protein	C-terminal	domain
HATPase_c_3	PF13589.6	gi|408402798|ref|YP_006860781.1|	-	5.6e-09	36.0	0.1	9.3e-09	35.2	0.1	1.3	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HATPase_c	PF02518.26	gi|408402798|ref|YP_006860781.1|	-	0.0071	16.8	1.1	0.03	14.8	0.2	2.3	1	1	1	2	2	2	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
MS_channel	PF00924.18	gi|408402799|ref|YP_006860782.1|	-	1.7e-11	44.1	3.4	1.7e-11	44.1	3.4	2.7	3	0	0	3	3	3	1	Mechanosensitive	ion	channel
zf-C2H2_4	PF13894.6	gi|408402802|ref|YP_006860785.1|	-	0.0025	18.5	0.2	0.0049	17.6	0.2	1.5	1	0	0	1	1	1	1	C2H2-type	zinc	finger
zf-C2H2	PF00096.26	gi|408402802|ref|YP_006860785.1|	-	0.021	15.3	0.1	0.049	14.1	0.1	1.7	1	0	0	1	1	1	0	Zinc	finger,	C2H2	type
zf-met	PF12874.7	gi|408402802|ref|YP_006860785.1|	-	0.12	12.8	0.2	0.22	12.0	0.2	1.4	1	0	0	1	1	1	0	Zinc-finger	of	C2H2	type
zf-C2H2_jaz	PF12171.8	gi|408402802|ref|YP_006860785.1|	-	0.12	12.7	0.2	0.2	12.0	0.2	1.3	1	0	0	1	1	1	0	Zinc-finger	double-stranded	RNA-binding
Tmemb_55A	PF09788.9	gi|408402802|ref|YP_006860785.1|	-	0.13	11.3	0.0	0.14	11.2	0.0	1.1	1	0	0	1	1	1	0	Transmembrane	protein	55A
DUF2795	PF11387.8	gi|408402804|ref|YP_006860787.1|	-	1.5e-29	101.9	0.4	1.1e-14	54.3	0.1	2.3	2	0	0	2	2	2	2	Protein	of	unknown	function	(DUF2795)
zf-C2H2_4	PF13894.6	gi|408402804|ref|YP_006860787.1|	-	0.00091	19.9	0.5	0.0023	18.6	0.3	1.8	2	0	0	2	2	2	1	C2H2-type	zinc	finger
zf-C2H2	PF00096.26	gi|408402804|ref|YP_006860787.1|	-	0.0011	19.2	0.5	0.0025	18.2	0.5	1.6	1	0	0	1	1	1	1	Zinc	finger,	C2H2	type
E1-N	PF14463.6	gi|408402804|ref|YP_006860787.1|	-	0.015	15.1	0.1	0.019	14.8	0.1	1.2	1	0	0	1	1	1	0	E1	N-terminal	domain
zf-Di19	PF05605.12	gi|408402804|ref|YP_006860787.1|	-	0.14	12.5	0.1	0.27	11.6	0.1	1.4	1	0	0	1	1	1	0	Drought	induced	19	protein	(Di19),	zinc-binding
DUF2795	PF11387.8	gi|408402805|ref|YP_006860788.1|	-	4e-14	52.5	0.0	7.5e-14	51.7	0.0	1.5	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF2795)
DUF2795	PF11387.8	gi|408402808|ref|YP_006860791.1|	-	8.7e-06	25.9	0.4	3.5e-05	23.9	0.1	2.2	2	1	0	2	2	2	1	Protein	of	unknown	function	(DUF2795)
TMF_DNA_bd	PF12329.8	gi|408402809|ref|YP_006860792.1|	-	0.22	11.6	4.0	0.8	9.7	4.0	1.8	1	1	0	1	1	1	0	TATA	element	modulatory	factor	1	DNA	binding
Carboxyl_trans	PF01039.22	gi|408402810|ref|YP_006860793.1|	-	5.5e-187	622.3	0.4	6.2e-187	622.1	0.4	1.0	1	0	0	1	1	1	1	Carboxyl	transferase	domain
MdcE	PF06833.11	gi|408402810|ref|YP_006860793.1|	-	2.8e-05	23.7	0.0	0.00024	20.7	0.0	2.1	2	0	0	2	2	2	1	Malonate	decarboxylase	gamma	subunit	(MdcE)
CPSase_L_D2	PF02786.17	gi|408402811|ref|YP_006860794.1|	-	2.6e-74	249.3	0.1	4.2e-74	248.6	0.1	1.3	1	0	0	1	1	1	1	Carbamoyl-phosphate	synthase	L	chain,	ATP	binding	domain
Biotin_carb_N	PF00289.22	gi|408402811|ref|YP_006860794.1|	-	4.6e-47	159.1	0.4	3.3e-46	156.4	0.3	2.2	2	0	0	2	2	2	1	Biotin	carboxylase,	N-terminal	domain
Biotin_carb_C	PF02785.19	gi|408402811|ref|YP_006860794.1|	-	3.5e-36	123.6	0.0	7.6e-36	122.5	0.0	1.6	1	0	0	1	1	1	1	Biotin	carboxylase	C-terminal	domain
RimK	PF08443.11	gi|408402811|ref|YP_006860794.1|	-	6.3e-08	32.4	0.0	0.00012	21.7	0.0	2.3	2	0	0	2	2	2	2	RimK-like	ATP-grasp	domain
Dala_Dala_lig_C	PF07478.13	gi|408402811|ref|YP_006860794.1|	-	9.5e-08	31.8	0.0	2.7e-07	30.3	0.0	1.7	1	1	0	1	1	1	1	D-ala	D-ala	ligase	C-terminus
ATP-grasp	PF02222.22	gi|408402811|ref|YP_006860794.1|	-	7.7e-07	28.8	0.0	1.6e-06	27.8	0.0	1.5	1	0	0	1	1	1	1	ATP-grasp	domain
ATP-grasp_3	PF02655.14	gi|408402811|ref|YP_006860794.1|	-	1e-05	25.7	0.0	5.8e-05	23.2	0.0	2.1	1	1	0	1	1	1	1	ATP-grasp	domain
ATPgrasp_ST	PF14397.6	gi|408402811|ref|YP_006860794.1|	-	0.0094	15.2	0.0	0.14	11.4	0.0	2.5	3	0	0	3	3	3	1	Sugar-transfer	associated	ATP-grasp
Biotin_lipoyl	PF00364.22	gi|408402812|ref|YP_006860795.1|	-	6.6e-16	57.9	3.9	1.2e-15	57.0	3.9	1.5	1	0	0	1	1	1	1	Biotin-requiring	enzyme
Biotin_lipoyl_2	PF13533.6	gi|408402812|ref|YP_006860795.1|	-	2.8e-12	46.2	4.7	1.3e-08	34.6	0.5	2.5	1	1	1	2	2	2	2	Biotin-lipoyl	like
HlyD_D23	PF16576.5	gi|408402812|ref|YP_006860795.1|	-	0.00028	20.2	0.7	0.15	11.3	0.2	2.3	1	1	1	2	2	2	2	Barrel-sandwich	domain	of	CusB	or	HlyD	membrane-fusion
HlyD_3	PF13437.6	gi|408402812|ref|YP_006860795.1|	-	0.0088	16.7	2.2	2.7	8.8	0.0	3.0	2	2	1	3	3	3	2	HlyD	family	secretion	protein
GCV_H	PF01597.19	gi|408402812|ref|YP_006860795.1|	-	0.019	14.9	0.8	0.039	13.8	0.6	1.7	2	0	0	2	2	2	0	Glycine	cleavage	H-protein
Activator-TraM	PF11657.8	gi|408402812|ref|YP_006860795.1|	-	0.034	14.0	0.5	2.1	8.2	0.1	2.2	1	1	1	2	2	2	0	Transcriptional	activator	TraM
DUF2118	PF09891.9	gi|408402812|ref|YP_006860795.1|	-	0.034	14.1	1.0	0.096	12.6	0.5	1.9	1	1	0	2	2	2	0	Uncharacterized	protein	conserved	in	archaea	(DUF2118)
PYNP_C	PF07831.13	gi|408402812|ref|YP_006860795.1|	-	0.081	12.6	1.5	0.48	10.1	0.3	2.3	2	0	0	2	2	2	0	Pyrimidine	nucleoside	phosphorylase	C-terminal	domain
QRPTase_N	PF02749.16	gi|408402812|ref|YP_006860795.1|	-	0.085	12.9	0.8	2.6	8.2	0.1	2.9	1	1	1	3	3	3	0	Quinolinate	phosphoribosyl	transferase,	N-terminal	domain
HlyD	PF00529.20	gi|408402812|ref|YP_006860795.1|	-	0.095	12.6	0.5	0.23	11.4	0.3	1.6	1	1	0	1	1	1	0	HlyD	membrane-fusion	protein	of	T1SS
Methyltransf_21	PF05050.12	gi|408402813|ref|YP_006860796.1|	-	1.8e-12	47.6	1.0	1.2e-11	44.9	1.0	1.9	1	1	0	1	1	1	1	Methyltransferase	FkbM	domain
Met_10	PF02475.16	gi|408402813|ref|YP_006860796.1|	-	1.3e-07	31.5	0.1	3.1e-07	30.3	0.0	1.5	2	0	0	2	2	2	1	Met-10+	like-protein
PCMT	PF01135.19	gi|408402813|ref|YP_006860796.1|	-	1.3e-05	25.1	0.0	2.2e-05	24.3	0.0	1.3	1	0	0	1	1	1	1	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
Methyltransf_31	PF13847.6	gi|408402813|ref|YP_006860796.1|	-	4.8e-05	23.2	0.1	0.00012	21.9	0.0	1.6	2	0	0	2	2	2	1	Methyltransferase	domain
FtsJ	PF01728.19	gi|408402813|ref|YP_006860796.1|	-	5.4e-05	23.4	0.0	0.00017	21.8	0.0	1.8	1	1	0	1	1	1	1	FtsJ-like	methyltransferase
V_cholerae_RfbT	PF05575.11	gi|408402813|ref|YP_006860796.1|	-	9e-05	21.9	0.0	0.0002	20.8	0.0	1.4	1	1	0	1	1	1	1	Vibrio	cholerae	RfbT	protein
Methyltransf_25	PF13649.6	gi|408402813|ref|YP_006860796.1|	-	0.00027	21.6	0.0	0.0014	19.3	0.0	2.0	1	1	1	2	2	2	1	Methyltransferase	domain
MTS	PF05175.14	gi|408402813|ref|YP_006860796.1|	-	0.0014	18.2	0.0	0.0021	17.6	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	small	domain
Ubie_methyltran	PF01209.18	gi|408402813|ref|YP_006860796.1|	-	0.0062	15.9	0.0	0.011	15.1	0.0	1.3	1	0	0	1	1	1	1	ubiE/COQ5	methyltransferase	family
Methyltr_RsmB-F	PF01189.17	gi|408402813|ref|YP_006860796.1|	-	0.0089	15.7	0.0	0.021	14.5	0.0	1.5	2	0	0	2	2	2	1	16S	rRNA	methyltransferase	RsmB/F
GCD14	PF08704.10	gi|408402813|ref|YP_006860796.1|	-	0.012	15.3	0.0	0.019	14.6	0.0	1.4	1	0	0	1	1	1	0	tRNA	methyltransferase	complex	GCD14	subunit
CarD_CdnL_TRCF	PF02559.16	gi|408402813|ref|YP_006860796.1|	-	0.035	14.8	0.0	0.39	11.5	0.0	2.1	2	0	0	2	2	2	0	CarD-like/TRCF	domain
Methyltransf_3	PF01596.17	gi|408402813|ref|YP_006860796.1|	-	0.057	12.6	0.0	0.12	11.5	0.0	1.5	1	0	0	1	1	1	0	O-methyltransferase
DOT1	PF08123.13	gi|408402813|ref|YP_006860796.1|	-	0.11	12.0	0.0	0.22	11.0	0.0	1.5	1	0	0	1	1	1	0	Histone	methylation	protein	DOT1
M60-like_N	PF17291.2	gi|408402813|ref|YP_006860796.1|	-	0.12	12.2	0.0	0.28	11.1	0.0	1.6	1	0	0	1	1	1	0	N-terminal	domain	of	M60-like	peptidases
Methyltransf_4	PF02390.17	gi|408402813|ref|YP_006860796.1|	-	0.14	11.6	0.0	0.94	8.9	0.1	2.0	2	0	0	2	2	2	0	Putative	methyltransferase
AhpC-TSA	PF00578.21	gi|408402814|ref|YP_006860797.1|	-	8.4e-36	122.6	0.0	9.9e-36	122.4	0.0	1.1	1	0	0	1	1	1	1	AhpC/TSA	family
Redoxin	PF08534.10	gi|408402814|ref|YP_006860797.1|	-	2.9e-25	88.7	0.0	3.4e-25	88.5	0.0	1.0	1	0	0	1	1	1	1	Redoxin
AhpC-TSA_2	PF13911.6	gi|408402814|ref|YP_006860797.1|	-	0.0058	16.7	0.0	0.13	12.4	0.0	2.1	1	1	1	2	2	2	1	AhpC/TSA	antioxidant	enzyme
SCO1-SenC	PF02630.14	gi|408402814|ref|YP_006860797.1|	-	0.063	13.2	0.0	0.081	12.8	0.0	1.4	1	1	0	1	1	1	0	SCO1/SenC
Tax	PF02959.16	gi|408402814|ref|YP_006860797.1|	-	0.12	11.8	0.0	0.15	11.5	0.0	1.1	1	0	0	1	1	1	0	HTLV	Tax
Aminotran_5	PF00266.19	gi|408402815|ref|YP_006860798.1|	-	1.9e-89	300.2	0.0	2.3e-89	299.9	0.0	1.1	1	0	0	1	1	1	1	Aminotransferase	class-V
Beta_elim_lyase	PF01212.21	gi|408402815|ref|YP_006860798.1|	-	1.3e-07	31.2	0.0	1.6e-07	30.9	0.0	1.3	1	0	0	1	1	1	1	Beta-eliminating	lyase
NAD_synthase	PF02540.17	gi|408402816|ref|YP_006860799.1|	-	1.3e-09	37.6	0.0	3.8e-09	36.0	0.0	1.7	2	0	0	2	2	2	1	NAD	synthase
tRNA_Me_trans	PF03054.16	gi|408402816|ref|YP_006860799.1|	-	1.3e-09	37.3	0.1	5.3e-07	28.8	0.1	2.2	2	0	0	2	2	2	2	tRNA	methyl	transferase
QueC	PF06508.13	gi|408402816|ref|YP_006860799.1|	-	2.5e-09	37.0	0.1	1.1e-08	34.8	0.1	2.0	3	0	0	3	3	3	1	Queuosine	biosynthesis	protein	QueC
Asn_synthase	PF00733.21	gi|408402816|ref|YP_006860799.1|	-	4e-09	36.6	0.0	5.7e-09	36.1	0.0	1.1	1	0	0	1	1	1	1	Asparagine	synthase
ATP_bind_3	PF01171.20	gi|408402816|ref|YP_006860799.1|	-	1.3e-05	25.1	0.1	0.00016	21.5	0.1	2.2	1	1	0	2	2	2	1	PP-loop	family
Arginosuc_synth	PF00764.19	gi|408402816|ref|YP_006860799.1|	-	0.003	16.9	0.6	0.012	15.0	0.6	1.9	1	1	0	1	1	1	1	Arginosuccinate	synthase
ThiI	PF02568.14	gi|408402816|ref|YP_006860799.1|	-	0.012	15.3	0.1	0.023	14.3	0.1	1.5	1	1	0	1	1	1	0	Thiamine	biosynthesis	protein	(ThiI)
AAA_33	PF13671.6	gi|408402816|ref|YP_006860799.1|	-	0.018	15.2	0.0	0.49	10.6	0.0	2.2	1	1	1	2	2	2	0	AAA	domain
Yippee-Mis18	PF03226.14	gi|408402816|ref|YP_006860799.1|	-	0.06	13.6	0.0	0.12	12.6	0.0	1.5	1	0	0	1	1	1	0	Yippee	zinc-binding/DNA-binding	/Mis18,	centromere	assembly
Mut7-C	PF01927.16	gi|408402816|ref|YP_006860799.1|	-	0.15	12.2	0.0	0.33	11.0	0.0	1.6	2	0	0	2	2	2	0	Mut7-C	RNAse	domain
SinI	PF08671.10	gi|408402816|ref|YP_006860799.1|	-	0.23	11.3	2.2	7.6	6.4	0.1	2.8	2	0	0	2	2	2	0	Anti-repressor	SinI
DUF111	PF01969.17	gi|408402817|ref|YP_006860800.1|	-	2.2e-98	329.8	1.1	2.5e-98	329.6	1.1	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF111
DUF4448	PF14610.6	gi|408402818|ref|YP_006860801.1|	-	0.031	14.1	0.0	0.063	13.1	0.0	1.5	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF4448)
DUF4307	PF14155.6	gi|408402818|ref|YP_006860801.1|	-	0.051	13.4	0.1	0.083	12.7	0.1	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4307)
Ldh_1_N	PF00056.23	gi|408402819|ref|YP_006860802.1|	-	1.4e-37	128.9	0.8	3.7e-37	127.6	0.8	1.7	1	0	0	1	1	1	1	lactate/malate	dehydrogenase,	NAD	binding	domain
Ldh_1_C	PF02866.18	gi|408402819|ref|YP_006860802.1|	-	3.5e-22	79.1	0.1	5.3e-22	78.5	0.1	1.2	1	0	0	1	1	1	1	lactate/malate	dehydrogenase,	alpha/beta	C-terminal	domain
UDPG_MGDP_dh_N	PF03721.14	gi|408402819|ref|YP_006860802.1|	-	0.014	15.0	0.4	0.029	13.9	0.1	1.7	2	0	0	2	2	2	0	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
Glyco_hydro_4	PF02056.16	gi|408402819|ref|YP_006860802.1|	-	0.031	13.8	0.5	0.42	10.1	0.1	2.2	1	1	1	2	2	2	0	Family	4	glycosyl	hydrolase
AIRC	PF00731.20	gi|408402820|ref|YP_006860803.1|	-	3.3e-15	56.0	8.6	4.9e-15	55.4	8.6	1.3	1	0	0	1	1	1	1	AIR	carboxylase
Ribosomal_L5e	PF17144.4	gi|408402821|ref|YP_006860804.1|	-	2.6e-15	56.8	7.1	4.3e-13	49.6	0.0	3.4	3	1	1	4	4	4	2	Ribosomal	large	subunit	proteins	60S	L5,	and	50S	L18
Ribosomal_L18_c	PF14204.6	gi|408402821|ref|YP_006860804.1|	-	3.7e-06	27.8	21.8	0.00026	21.9	21.8	2.3	1	1	0	1	1	1	1	Ribosomal	L18	C-terminal	region
Ribosomal_L18p	PF00861.22	gi|408402821|ref|YP_006860804.1|	-	0.0001	22.6	0.0	0.0001	22.6	0.0	1.9	2	0	0	2	2	2	1	Ribosomal	L18	of	archaea,	bacteria,	mitoch.	and	chloroplast
RR_TM4-6	PF06459.12	gi|408402821|ref|YP_006860804.1|	-	1.5	8.5	16.7	2	8.2	16.7	1.3	1	0	0	1	1	1	0	Ryanodine	Receptor	TM	4-6
RNA_pol_Rpc4	PF05132.14	gi|408402821|ref|YP_006860804.1|	-	2	8.9	12.0	2.5	8.5	12.0	1.3	1	0	0	1	1	1	0	RNA	polymerase	III	RPC4
DUF2052	PF09747.9	gi|408402821|ref|YP_006860804.1|	-	3.6	7.7	14.3	4.9	7.2	14.3	1.2	1	0	0	1	1	1	0	Coiled-coil	domain	containing	protein	(DUF2052)
Presenilin	PF01080.17	gi|408402821|ref|YP_006860804.1|	-	5.4	5.7	6.8	5.8	5.6	6.8	1.1	1	0	0	1	1	1	0	Presenilin
Ribosomal_S5	PF00333.20	gi|408402822|ref|YP_006860805.1|	-	2.6e-21	75.3	2.6	1.5e-20	72.9	2.4	2.1	2	0	0	2	2	2	1	Ribosomal	protein	S5,	N-terminal	domain
Ribosomal_S5_C	PF03719.15	gi|408402822|ref|YP_006860805.1|	-	6.5e-19	67.2	0.1	1e-18	66.5	0.1	1.3	1	0	0	1	1	1	1	Ribosomal	protein	S5,	C-terminal	domain
Ribosomal_L30	PF00327.20	gi|408402823|ref|YP_006860806.1|	-	4.7e-13	48.8	0.0	7.6e-13	48.1	0.0	1.4	1	0	0	1	1	1	1	Ribosomal	protein	L30p/L7e
Ribosomal_L27A	PF00828.19	gi|408402824|ref|YP_006860807.1|	-	2.6e-17	63.7	0.2	3.9e-17	63.1	0.2	1.3	1	0	0	1	1	1	1	Ribosomal	proteins	50S-L15,	50S-L18e,	60S-L27A
Ribosomal_L18	PF17135.4	gi|408402824|ref|YP_006860807.1|	-	0.094	12.1	0.0	0.17	11.2	0.0	1.4	1	0	0	1	1	1	0	Ribosomal	protein	60S	L18	and	50S	L18e
SecY	PF00344.20	gi|408402825|ref|YP_006860808.1|	-	1.3e-62	211.8	15.7	1.7e-62	211.5	15.7	1.1	1	0	0	1	1	1	1	SecY	translocase
Plug_translocon	PF10559.9	gi|408402825|ref|YP_006860808.1|	-	5.2e-12	45.4	0.6	1.9e-11	43.6	0.6	2.1	1	0	0	1	1	1	1	Plug	domain	of	Sec61p
AAA_17	PF13207.6	gi|408402826|ref|YP_006860809.1|	-	3.2e-33	115.1	0.5	4.1e-33	114.7	0.5	1.1	1	0	0	1	1	1	1	AAA	domain
AAA_18	PF13238.6	gi|408402826|ref|YP_006860809.1|	-	8.9e-08	32.7	0.1	1.6e-07	31.9	0.1	1.3	1	0	0	1	1	1	1	AAA	domain
SRP54	PF00448.22	gi|408402826|ref|YP_006860809.1|	-	1.1e-05	25.2	0.4	1.8e-05	24.5	0.4	1.5	1	1	0	1	1	1	1	SRP54-type	protein,	GTPase	domain
AAA_33	PF13671.6	gi|408402826|ref|YP_006860809.1|	-	1.8e-05	24.9	0.1	2.5e-05	24.5	0.1	1.2	1	0	0	1	1	1	1	AAA	domain
AAA_30	PF13604.6	gi|408402826|ref|YP_006860809.1|	-	2.7e-05	24.0	2.0	0.00014	21.6	0.0	2.6	3	0	0	3	3	3	1	AAA	domain
AAA_28	PF13521.6	gi|408402826|ref|YP_006860809.1|	-	3.7e-05	24.0	0.6	6.5e-05	23.2	0.6	1.4	1	1	0	1	1	1	1	AAA	domain
KdpD	PF02702.17	gi|408402826|ref|YP_006860809.1|	-	0.00018	21.0	1.5	0.00021	20.8	0.3	1.6	2	0	0	2	2	2	1	Osmosensitive	K+	channel	His	kinase	sensor	domain
AAA	PF00004.29	gi|408402826|ref|YP_006860809.1|	-	0.00021	21.7	0.4	0.0004	20.8	0.3	1.7	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
NTPase_1	PF03266.15	gi|408402826|ref|YP_006860809.1|	-	0.00045	20.2	0.1	0.00073	19.5	0.1	1.4	1	0	0	1	1	1	1	NTPase
AAA_22	PF13401.6	gi|408402826|ref|YP_006860809.1|	-	0.00052	20.3	0.1	0.001	19.3	0.1	1.6	1	1	0	1	1	1	1	AAA	domain
KTI12	PF08433.10	gi|408402826|ref|YP_006860809.1|	-	0.0011	18.5	0.1	0.0014	18.1	0.1	1.2	1	0	0	1	1	1	1	Chromatin	associated	protein	KTI12
AAA_5	PF07728.14	gi|408402826|ref|YP_006860809.1|	-	0.0011	18.9	0.8	0.0021	18.1	0.8	1.9	1	1	0	1	1	1	1	AAA	domain	(dynein-related	subfamily)
MMR_HSR1	PF01926.23	gi|408402826|ref|YP_006860809.1|	-	0.0012	18.9	0.1	0.0021	18.1	0.1	1.5	1	1	0	1	1	1	1	50S	ribosome-binding	GTPase
DnaB_C	PF03796.15	gi|408402826|ref|YP_006860809.1|	-	0.0015	18.0	2.4	0.0019	17.6	2.4	1.2	1	0	0	1	1	1	1	DnaB-like	helicase	C	terminal	domain
Viral_helicase1	PF01443.18	gi|408402826|ref|YP_006860809.1|	-	0.0036	17.1	0.0	0.0058	16.4	0.0	1.4	1	0	0	1	1	1	1	Viral	(Superfamily	1)	RNA	helicase
AAA_24	PF13479.6	gi|408402826|ref|YP_006860809.1|	-	0.0068	16.2	0.3	0.014	15.1	0.1	1.7	1	1	0	1	1	1	1	AAA	domain
ResIII	PF04851.15	gi|408402826|ref|YP_006860809.1|	-	0.0069	16.4	0.4	0.0086	16.1	0.4	1.6	1	1	0	1	1	1	1	Type	III	restriction	enzyme,	res	subunit
DUF5356	PF17309.2	gi|408402826|ref|YP_006860809.1|	-	0.007	16.3	0.3	4.7	7.2	0.0	2.2	2	0	0	2	2	2	2	Family	of	unknown	function	(DUF5356)
AAA_19	PF13245.6	gi|408402826|ref|YP_006860809.1|	-	0.0082	16.5	1.5	0.0082	16.5	1.5	2.1	2	1	0	2	2	2	1	AAA	domain
AAA_7	PF12775.7	gi|408402826|ref|YP_006860809.1|	-	0.01	15.4	0.1	0.015	14.8	0.1	1.3	1	0	0	1	1	1	0	P-loop	containing	dynein	motor	region
Zeta_toxin	PF06414.12	gi|408402826|ref|YP_006860809.1|	-	0.012	14.9	0.1	0.024	13.9	0.1	1.5	1	0	0	1	1	1	0	Zeta	toxin
ATPase_2	PF01637.18	gi|408402826|ref|YP_006860809.1|	-	0.016	15.1	0.0	0.017	15.1	0.0	1.3	1	0	0	1	1	1	0	ATPase	domain	predominantly	from	Archaea
AAA_16	PF13191.6	gi|408402826|ref|YP_006860809.1|	-	0.018	15.5	0.1	0.024	15.0	0.1	1.5	1	1	0	1	1	1	0	AAA	ATPase	domain
MeaB	PF03308.16	gi|408402826|ref|YP_006860809.1|	-	0.019	14.0	0.0	0.029	13.4	0.0	1.5	1	0	0	1	1	1	0	Methylmalonyl	Co-A	mutase-associated	GTPase	MeaB
ATP_bind_1	PF03029.17	gi|408402826|ref|YP_006860809.1|	-	0.02	14.6	1.3	0.03	14.1	0.2	1.8	2	1	1	3	3	3	0	Conserved	hypothetical	ATP	binding	protein
APS_kinase	PF01583.20	gi|408402826|ref|YP_006860809.1|	-	0.028	14.3	0.4	0.051	13.5	0.1	1.5	2	0	0	2	2	2	0	Adenylylsulphate	kinase
Thymidylate_kin	PF02223.17	gi|408402826|ref|YP_006860809.1|	-	0.029	14.1	1.7	0.19	11.4	0.5	2.3	2	1	0	2	2	2	0	Thymidylate	kinase
AAA_14	PF13173.6	gi|408402826|ref|YP_006860809.1|	-	0.045	13.8	0.2	0.1	12.7	0.1	1.7	1	1	1	2	2	2	0	AAA	domain
cobW	PF02492.19	gi|408402826|ref|YP_006860809.1|	-	0.054	13.1	0.3	0.054	13.1	0.3	2.1	2	2	1	3	3	3	0	CobW/HypB/UreG,	nucleotide-binding	domain
Roc	PF08477.13	gi|408402826|ref|YP_006860809.1|	-	0.058	13.6	0.5	0.11	12.7	0.1	1.8	2	0	0	2	2	1	0	Ras	of	Complex,	Roc,	domain	of	DAPkinase
AAA_11	PF13086.6	gi|408402826|ref|YP_006860809.1|	-	0.094	12.5	3.0	0.45	10.2	0.1	2.5	1	1	1	2	2	2	0	AAA	domain
DAP3	PF10236.9	gi|408402826|ref|YP_006860809.1|	-	0.12	11.5	0.0	0.17	11.0	0.0	1.3	1	0	0	1	1	1	0	Mitochondrial	ribosomal	death-associated	protein	3
EMC3_TMCO1	PF01956.16	gi|408402827|ref|YP_006860810.1|	-	1.5e-15	57.4	10.9	3.7e-15	56.1	5.6	2.0	2	0	0	2	2	2	1	Integral	membrane	protein	EMC3/TMCO1-like
Iso_dh	PF00180.20	gi|408402827|ref|YP_006860810.1|	-	0.0032	16.7	1.9	0.0043	16.3	1.9	1.1	1	0	0	1	1	1	1	Isocitrate/isopropylmalate	dehydrogenase
CLN3	PF02487.17	gi|408402827|ref|YP_006860810.1|	-	0.011	14.8	1.0	0.015	14.4	1.0	1.1	1	0	0	1	1	1	0	CLN3	protein
Thioredoxin_4	PF13462.6	gi|408402827|ref|YP_006860810.1|	-	0.051	13.7	0.9	0.072	13.2	0.9	1.1	1	0	0	1	1	1	0	Thioredoxin
DNA_pol_E_B	PF04042.16	gi|408402827|ref|YP_006860810.1|	-	0.095	12.0	0.5	0.18	11.1	0.2	1.6	2	0	0	2	2	2	0	DNA	polymerase	alpha/epsilon	subunit	B
RSN1_TM	PF13967.6	gi|408402827|ref|YP_006860810.1|	-	0.23	11.2	2.6	0.95	9.2	2.6	2.1	1	1	0	1	1	1	0	Late	exocytosis,	associated	with	Golgi	transport
DUF996	PF06195.13	gi|408402827|ref|YP_006860810.1|	-	0.29	11.4	3.1	10	6.4	0.1	2.4	2	1	1	3	3	3	0	Protein	of	unknown	function	(DUF996)
SUIM_assoc	PF16619.5	gi|408402827|ref|YP_006860810.1|	-	1	9.4	4.0	2.4	8.3	3.9	1.7	1	1	0	1	1	1	0	Unstructured	region	C-term	to	UIM	in	Ataxin3
Cytidylate_kin2	PF13189.6	gi|408402828|ref|YP_006860811.1|	-	9.6e-18	64.9	0.3	3.1e-17	63.3	0.3	1.7	1	1	0	1	1	1	1	Cytidylate	kinase-like	family
AAA_18	PF13238.6	gi|408402828|ref|YP_006860811.1|	-	8.8e-12	45.7	0.0	1.2e-11	45.3	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
AAA_17	PF13207.6	gi|408402828|ref|YP_006860811.1|	-	3e-08	34.2	0.0	4.2e-08	33.7	0.0	1.4	1	1	0	1	1	1	1	AAA	domain
Cytidylate_kin	PF02224.18	gi|408402828|ref|YP_006860811.1|	-	9.6e-06	25.5	0.2	0.068	12.9	0.1	2.1	1	1	1	2	2	2	2	Cytidylate	kinase
SKI	PF01202.22	gi|408402828|ref|YP_006860811.1|	-	0.0021	18.2	0.1	1.1	9.3	0.0	2.1	2	0	0	2	2	2	2	Shikimate	kinase
KTI12	PF08433.10	gi|408402828|ref|YP_006860811.1|	-	0.0024	17.3	0.0	0.0042	16.6	0.0	1.4	1	1	0	1	1	1	1	Chromatin	associated	protein	KTI12
AAA_33	PF13671.6	gi|408402828|ref|YP_006860811.1|	-	0.0041	17.3	0.1	0.0099	16.0	0.1	1.8	1	1	0	1	1	1	1	AAA	domain
AAA_28	PF13521.6	gi|408402828|ref|YP_006860811.1|	-	0.012	15.8	0.0	0.022	15.0	0.0	1.6	1	0	0	1	1	1	0	AAA	domain
ADK	PF00406.22	gi|408402828|ref|YP_006860811.1|	-	0.012	15.7	0.1	0.031	14.4	0.0	1.7	2	1	0	2	2	2	0	Adenylate	kinase
AAA	PF00004.29	gi|408402828|ref|YP_006860811.1|	-	0.015	15.7	0.2	0.017	15.6	0.1	1.4	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
RTX_C	PF08339.10	gi|408402828|ref|YP_006860811.1|	-	0.017	15.2	0.3	0.028	14.5	0.3	1.5	1	1	0	1	1	1	0	RTX	C-terminal	domain
CoaE	PF01121.20	gi|408402828|ref|YP_006860811.1|	-	0.022	14.5	0.1	0.42	10.3	0.0	2.1	2	0	0	2	2	2	0	Dephospho-CoA	kinase
6PF2K	PF01591.18	gi|408402828|ref|YP_006860811.1|	-	0.059	12.7	0.0	0.1	11.9	0.0	1.4	1	0	0	1	1	1	0	6-phosphofructo-2-kinase
AAA_22	PF13401.6	gi|408402828|ref|YP_006860811.1|	-	0.1	12.9	0.0	0.18	12.1	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
dNK	PF01712.19	gi|408402828|ref|YP_006860811.1|	-	0.11	12.4	0.1	0.48	10.2	0.0	1.9	2	0	0	2	2	2	0	Deoxynucleoside	kinase
NTPase_1	PF03266.15	gi|408402828|ref|YP_006860811.1|	-	0.15	12.0	0.0	0.26	11.2	0.0	1.4	1	0	0	1	1	1	0	NTPase
RNA_helicase	PF00910.22	gi|408402828|ref|YP_006860811.1|	-	0.18	12.2	0.0	0.34	11.3	0.0	1.5	1	0	0	1	1	1	0	RNA	helicase
Nif11	PF07862.11	gi|408402828|ref|YP_006860811.1|	-	3	8.2	5.0	6.8	7.1	0.2	2.6	3	0	0	3	3	2	0	Nif11	domain
TruB_N	PF01509.18	gi|408402829|ref|YP_006860812.1|	-	5.8e-24	85.2	0.4	2.2e-15	57.3	0.0	3.2	1	1	1	2	2	2	2	TruB	family	pseudouridylate	synthase	(N	terminal	domain)
TruB_C_2	PF16198.5	gi|408402829|ref|YP_006860812.1|	-	1.9e-18	66.3	0.0	4.5e-18	65.2	0.0	1.7	1	0	0	1	1	1	1	tRNA	pseudouridylate	synthase	B	C-terminal	domain
PUA	PF01472.20	gi|408402829|ref|YP_006860812.1|	-	9.3e-16	57.6	0.6	1.6e-15	56.8	0.6	1.4	1	0	0	1	1	1	1	PUA	domain
DKCLD	PF08068.12	gi|408402829|ref|YP_006860812.1|	-	4.8e-13	49.0	0.1	9.6e-13	48.0	0.1	1.6	1	0	0	1	1	1	1	DKCLD	(NUC011)	domain
R3H	PF01424.22	gi|408402829|ref|YP_006860812.1|	-	0.1	12.6	0.1	4.1	7.5	0.0	2.4	2	0	0	2	2	2	0	R3H	domain
TackOD1	PF18551.1	gi|408402831|ref|YP_006860814.1|	-	5.4e-41	140.3	6.0	8.1e-41	139.8	6.0	1.2	1	0	0	1	1	1	1	Thaumarchaeal	output	domain	1
DZR	PF12773.7	gi|408402831|ref|YP_006860814.1|	-	0.0002	21.3	14.7	0.86	9.7	3.0	3.0	1	1	1	2	2	2	1	Double	zinc	ribbon
zinc-ribbons_6	PF07191.12	gi|408402831|ref|YP_006860814.1|	-	0.00082	19.3	14.0	0.039	13.9	4.8	2.7	1	1	0	2	2	2	2	zinc-ribbons
zinc_ribbon_10	PF10058.9	gi|408402831|ref|YP_006860814.1|	-	0.0046	16.7	2.8	0.0046	16.7	2.8	2.8	2	1	0	2	2	2	1	Predicted	integral	membrane	zinc-ribbon	metal-binding	protein
HypA	PF01155.19	gi|408402831|ref|YP_006860814.1|	-	0.015	15.3	11.4	0.27	11.3	0.3	3.9	2	1	1	3	3	3	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
zinc_ribbon_15	PF17032.5	gi|408402831|ref|YP_006860814.1|	-	0.026	15.3	5.5	1.6	9.5	1.5	2.5	2	0	0	2	2	2	0	zinc-ribbon	family
Zn-ribbon_8	PF09723.10	gi|408402831|ref|YP_006860814.1|	-	0.052	13.7	13.5	4.1	7.6	0.5	4.1	3	1	0	3	3	3	0	Zinc	ribbon	domain
FYVE_2	PF02318.16	gi|408402831|ref|YP_006860814.1|	-	0.19	12.0	10.1	0.25	11.5	3.0	2.4	1	1	1	2	2	2	0	FYVE-type	zinc	finger
zf-TFIIB	PF13453.6	gi|408402831|ref|YP_006860814.1|	-	0.27	10.6	8.7	1.6	8.1	1.2	3.5	3	0	0	3	3	3	0	Transcription	factor	zinc-finger
DUF678	PF05077.12	gi|408402831|ref|YP_006860814.1|	-	0.5	10.5	9.1	2.2	8.4	0.5	2.7	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF678)
A2L_zn_ribbon	PF08792.10	gi|408402831|ref|YP_006860814.1|	-	0.53	10.1	10.7	36	4.2	0.1	4.6	4	0	0	4	4	4	0	A2L	zinc	ribbon	domain
eIF-5_eIF-2B	PF01873.17	gi|408402831|ref|YP_006860814.1|	-	0.84	9.5	10.2	11	6.0	10.3	2.3	1	1	1	2	2	2	0	Domain	found	in	IF2B/IF5
zf-RRPl_C4	PF17026.5	gi|408402831|ref|YP_006860814.1|	-	1.2	9.3	12.2	2.5	8.3	12.2	1.5	1	0	0	1	1	1	0	Putative	ribonucleoprotein	zinc-finger	pf	C4	type
DNA_RNApol_7kD	PF03604.13	gi|408402831|ref|YP_006860814.1|	-	1.2	8.9	8.4	6.3	6.6	2.8	3.8	3	1	1	4	4	4	0	DNA	directed	RNA	polymerase,	7	kDa	subunit
PHF5	PF03660.14	gi|408402831|ref|YP_006860814.1|	-	1.8	8.8	9.4	0.21	11.8	3.7	2.1	1	1	0	1	1	1	0	PHF5-like	protein
TF_Zn_Ribbon	PF08271.12	gi|408402831|ref|YP_006860814.1|	-	4	7.0	18.0	2.6	7.6	3.2	4.2	2	2	1	3	3	3	0	TFIIB	zinc-binding
DUF2039	PF10217.9	gi|408402831|ref|YP_006860814.1|	-	4.2	7.8	13.1	0.062	13.7	2.4	2.8	2	1	1	3	3	3	0	Uncharacterized	conserved	protein	(DUF2039)
Zn_Tnp_IS1595	PF12760.7	gi|408402831|ref|YP_006860814.1|	-	5.1	7.2	12.3	0.77	9.8	0.4	3.4	4	0	0	4	4	4	0	Transposase	zinc-ribbon	domain
zf-RING_10	PF16685.5	gi|408402831|ref|YP_006860814.1|	-	6.2	7.0	13.4	14	5.9	1.9	2.6	2	1	0	2	2	2	0	zinc	RING	finger	of	MSL2
zf-ribbon_3	PF13248.6	gi|408402831|ref|YP_006860814.1|	-	6.7	6.3	18.2	10	5.7	0.8	4.1	3	1	0	3	3	3	0	zinc-ribbon	domain
Glycos_transf_2	PF00535.26	gi|408402832|ref|YP_006860815.1|	-	1.8e-31	109.2	0.0	2.6e-31	108.7	0.0	1.2	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_tranf_2_3	PF13641.6	gi|408402832|ref|YP_006860815.1|	-	4.5e-27	95.4	0.0	6.2e-27	95.0	0.0	1.1	1	0	0	1	1	1	1	Glycosyltransferase	like	family	2
Glyco_trans_2_3	PF13632.6	gi|408402832|ref|YP_006860815.1|	-	2.3e-23	83.1	0.6	2.3e-23	83.1	0.6	1.7	2	0	0	2	2	2	1	Glycosyl	transferase	family	group	2
Chitin_synth_2	PF03142.15	gi|408402832|ref|YP_006860815.1|	-	4.2e-18	65.3	0.9	1.3e-12	47.2	0.0	3.3	2	1	1	3	3	3	3	Chitin	synthase
Glyco_transf_21	PF13506.6	gi|408402832|ref|YP_006860815.1|	-	2.8e-14	53.0	0.0	5.3e-14	52.1	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	transferase	family	21
Glyco_tranf_2_2	PF10111.9	gi|408402832|ref|YP_006860815.1|	-	5.6e-11	42.4	0.0	9.1e-11	41.7	0.0	1.3	1	0	0	1	1	1	1	Glycosyltransferase	like	family	2
Glyco_tranf_2_4	PF13704.6	gi|408402832|ref|YP_006860815.1|	-	0.0079	16.7	0.0	0.015	15.8	0.0	1.5	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
LysM	PF01476.20	gi|408402833|ref|YP_006860816.1|	-	9e-17	60.9	0.1	1.7e-16	60.0	0.1	1.5	1	0	0	1	1	1	1	LysM	domain
SLT	PF01464.20	gi|408402833|ref|YP_006860816.1|	-	2e-13	50.0	0.0	3.8e-13	49.1	0.0	1.5	1	0	0	1	1	1	1	Transglycosylase	SLT	domain
MFS_1	PF07690.16	gi|408402834|ref|YP_006860817.1|	-	0.00023	20.2	4.3	0.00034	19.6	4.3	1.1	1	0	0	1	1	1	1	Major	Facilitator	Superfamily
Tetraspanin	PF00335.20	gi|408402834|ref|YP_006860817.1|	-	0.034	13.8	0.1	5.9	6.5	0.0	2.2	1	1	1	2	2	2	0	Tetraspanin	family
DUF3098	PF11297.8	gi|408402834|ref|YP_006860817.1|	-	0.21	11.2	2.5	0.35	10.5	2.5	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3098)
RDD	PF06271.12	gi|408402834|ref|YP_006860817.1|	-	7.4	6.8	7.5	0.96	9.6	2.9	1.8	2	0	0	2	2	2	0	RDD	family
HTH_24	PF13412.6	gi|408402837|ref|YP_006860820.1|	-	0.00019	20.9	0.2	0.00032	20.2	0.2	1.3	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_AsnC-type	PF13404.6	gi|408402837|ref|YP_006860820.1|	-	0.00029	20.6	0.2	0.00045	20.0	0.2	1.3	1	0	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
Herpes_pp85	PF04637.12	gi|408402837|ref|YP_006860820.1|	-	0.075	11.4	0.1	0.084	11.3	0.1	1.0	1	0	0	1	1	1	0	Herpesvirus	phosphoprotein	85	(HHV6-7	U14/HCMV	UL25)
TM_helix	PF05552.12	gi|408402838|ref|YP_006860821.1|	-	2.4e-16	59.4	16.0	1.5e-09	37.7	0.4	3.9	4	0	0	4	4	4	2	Conserved	TM	helix
MS_channel	PF00924.18	gi|408402838|ref|YP_006860821.1|	-	5.2e-07	29.4	2.8	5.2e-07	29.4	2.8	1.8	1	1	0	1	1	1	1	Mechanosensitive	ion	channel
DUF1427	PF07235.11	gi|408402838|ref|YP_006860821.1|	-	0.23	11.4	4.3	0.29	11.1	0.1	3.2	4	0	0	4	4	4	0	Protein	of	unknown	function	(DUF1427)
Ppnp	PF06865.11	gi|408402839|ref|YP_006860822.1|	-	0.15	12.5	1.1	0.37	11.2	0.3	2.1	1	1	0	2	2	2	0	Pyrimidine/purine	nucleoside	phosphorylase
DUF2382	PF09557.10	gi|408402841|ref|YP_006860824.1|	-	1.3e-24	86.6	25.4	1.9e-24	86.0	25.4	1.3	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF2382)
Glyoxalase	PF00903.25	gi|408402842|ref|YP_006860825.1|	-	0.00012	22.3	0.0	0.00015	22.0	0.0	1.4	1	1	0	1	1	1	1	Glyoxalase/Bleomycin	resistance	protein/Dioxygenase	superfamily
ABM	PF03992.16	gi|408402843|ref|YP_006860826.1|	-	0.0001	22.3	0.1	0.00014	21.9	0.1	1.2	1	0	0	1	1	1	1	Antibiotic	biosynthesis	monooxygenase
DUF4286	PF14114.6	gi|408402843|ref|YP_006860826.1|	-	0.091	13.3	0.1	0.15	12.6	0.1	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4286)
Cas_Csy4	PF09618.10	gi|408402843|ref|YP_006860826.1|	-	0.097	12.8	0.0	0.14	12.2	0.0	1.2	1	0	0	1	1	1	0	CRISPR-associated	protein	(Cas_Csy4)
LapA_dom	PF06305.11	gi|408402843|ref|YP_006860826.1|	-	0.17	11.7	2.0	0.32	10.9	2.0	1.4	1	0	0	1	1	1	0	Lipopolysaccharide	assembly	protein	A	domain
TFIIB	PF00382.19	gi|408402844|ref|YP_006860827.1|	-	1.3e-28	98.8	0.4	5.7e-13	48.7	0.0	2.5	2	1	0	2	2	2	2	Transcription	factor	TFIIB	repeat
TF_Zn_Ribbon	PF08271.12	gi|408402844|ref|YP_006860827.1|	-	0.0037	16.7	0.0	0.0068	15.9	0.0	1.5	1	0	0	1	1	1	1	TFIIB	zinc-binding
Sigma70_r4	PF04545.16	gi|408402844|ref|YP_006860827.1|	-	0.0065	16.0	0.1	0.037	13.6	0.1	2.3	2	0	0	2	2	2	1	Sigma-70,	region	4
HTH_11	PF08279.12	gi|408402844|ref|YP_006860827.1|	-	0.017	15.0	2.8	0.044	13.7	0.1	2.6	2	0	0	2	2	2	0	HTH	domain
HTH_AsnC-type	PF13404.6	gi|408402844|ref|YP_006860827.1|	-	0.021	14.6	0.1	0.021	14.6	0.1	2.4	4	0	0	4	4	4	0	AsnC-type	helix-turn-helix	domain
HTH_29	PF13551.6	gi|408402844|ref|YP_006860827.1|	-	0.031	14.3	0.1	2.9	8.0	0.0	2.6	2	0	0	2	2	2	0	Winged	helix-turn	helix
HTH_23	PF13384.6	gi|408402844|ref|YP_006860827.1|	-	0.052	13.4	0.3	5.9	6.8	0.0	2.7	2	0	0	2	2	2	0	Homeodomain-like	domain
Sigma70_r4_2	PF08281.12	gi|408402844|ref|YP_006860827.1|	-	0.061	13.0	0.2	0.74	9.5	0.1	2.7	2	0	0	2	2	2	0	Sigma-70,	region	4
HTH_36	PF13730.6	gi|408402844|ref|YP_006860827.1|	-	0.098	12.6	1.1	6.1	6.9	0.0	2.4	2	0	0	2	2	2	0	Helix-turn-helix	domain
Pirin	PF02678.16	gi|408402845|ref|YP_006860828.1|	-	1e-34	118.8	0.2	1.6e-34	118.1	0.2	1.3	1	0	0	1	1	1	1	Pirin
Pirin_C	PF05726.13	gi|408402845|ref|YP_006860828.1|	-	3.2e-32	111.0	0.0	1.2e-30	106.0	0.0	2.7	3	0	0	3	3	3	1	Pirin	C-terminal	cupin	domain
Cupin_2	PF07883.11	gi|408402845|ref|YP_006860828.1|	-	1.3e-06	28.0	0.9	0.0055	16.4	0.4	2.4	2	0	0	2	2	2	2	Cupin	domain
Radical_SAM	PF04055.21	gi|408402846|ref|YP_006860829.1|	-	1.8e-11	44.7	0.3	4.6e-11	43.4	0.2	1.7	2	0	0	2	2	2	1	Radical	SAM	superfamily
Fer4_12	PF13353.6	gi|408402846|ref|YP_006860829.1|	-	1.9e-06	28.2	0.3	3.4e-06	27.4	0.3	1.3	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
Fer4_14	PF13394.6	gi|408402846|ref|YP_006860829.1|	-	7.6e-05	22.8	0.5	0.00024	21.2	0.3	1.8	2	0	0	2	2	2	1	4Fe-4S	single	cluster	domain
AAA	PF00004.29	gi|408402847|ref|YP_006860830.1|	-	2.3e-96	319.3	0.0	1.5e-48	164.6	0.0	2.3	2	0	0	2	2	2	2	ATPase	family	associated	with	various	cellular	activities	(AAA)
CDC48_N	PF02359.18	gi|408402847|ref|YP_006860830.1|	-	2.5e-26	91.6	0.1	1.1e-25	89.5	0.1	2.2	1	0	0	1	1	1	1	Cell	division	protein	48	(CDC48),	N-terminal	domain
AAA_lid_3	PF17862.1	gi|408402847|ref|YP_006860830.1|	-	7.2e-21	73.7	0.1	1e-10	41.2	0.0	2.7	2	0	0	2	2	2	2	AAA+	lid	domain
AAA_2	PF07724.14	gi|408402847|ref|YP_006860830.1|	-	3e-15	56.8	0.0	2.2e-07	31.1	0.0	2.4	2	0	0	2	2	2	2	AAA	domain	(Cdc48	subfamily)
RuvB_N	PF05496.12	gi|408402847|ref|YP_006860830.1|	-	3.3e-15	56.2	0.0	1.4e-08	34.6	0.0	2.8	2	1	0	2	2	2	2	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
AAA_16	PF13191.6	gi|408402847|ref|YP_006860830.1|	-	6.4e-14	52.7	1.1	0.0001	22.7	0.0	3.9	2	2	1	3	3	3	2	AAA	ATPase	domain
AAA_5	PF07728.14	gi|408402847|ref|YP_006860830.1|	-	6.7e-11	42.3	0.6	4.3e-05	23.5	0.1	3.6	2	2	0	2	2	2	2	AAA	domain	(dynein-related	subfamily)
AAA_22	PF13401.6	gi|408402847|ref|YP_006860830.1|	-	1.3e-10	41.7	2.6	0.0068	16.7	0.1	4.7	3	2	1	5	5	5	2	AAA	domain
TIP49	PF06068.13	gi|408402847|ref|YP_006860830.1|	-	1.4e-10	40.9	0.3	0.00029	20.2	0.1	2.4	2	0	0	2	2	2	2	TIP49	P-loop	domain
AAA_33	PF13671.6	gi|408402847|ref|YP_006860830.1|	-	1.5e-09	38.2	0.0	0.00049	20.3	0.0	2.4	2	0	0	2	2	2	2	AAA	domain
AAA_14	PF13173.6	gi|408402847|ref|YP_006860830.1|	-	2e-09	37.6	0.0	0.00026	21.0	0.0	2.4	2	0	0	2	2	2	2	AAA	domain
CDC48_2	PF02933.17	gi|408402847|ref|YP_006860830.1|	-	6.5e-09	35.4	0.0	1.6e-08	34.2	0.0	1.6	1	0	0	1	1	1	1	Cell	division	protein	48	(CDC48),	domain	2
Sigma54_activat	PF00158.26	gi|408402847|ref|YP_006860830.1|	-	5.3e-08	32.7	0.6	0.024	14.3	0.0	3.9	2	2	0	2	2	2	2	Sigma-54	interaction	domain
IstB_IS21	PF01695.17	gi|408402847|ref|YP_006860830.1|	-	5.6e-08	32.7	0.0	0.0059	16.4	0.0	2.4	2	0	0	2	2	2	2	IstB-like	ATP	binding	protein
AAA_28	PF13521.6	gi|408402847|ref|YP_006860830.1|	-	1.4e-06	28.6	0.6	0.02	15.2	0.0	3.3	4	0	0	4	4	3	2	AAA	domain
AAA_18	PF13238.6	gi|408402847|ref|YP_006860830.1|	-	2e-06	28.3	0.1	0.024	15.2	0.0	2.9	3	0	0	3	3	2	2	AAA	domain
AAA_7	PF12775.7	gi|408402847|ref|YP_006860830.1|	-	3.7e-06	26.6	0.1	0.058	12.9	0.0	2.6	2	1	0	2	2	2	2	P-loop	containing	dynein	motor	region
TsaE	PF02367.17	gi|408402847|ref|YP_006860830.1|	-	3.7e-06	26.9	0.0	0.033	14.2	0.0	2.5	2	0	0	2	2	2	2	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
RNA_helicase	PF00910.22	gi|408402847|ref|YP_006860830.1|	-	5e-06	26.9	0.0	0.12	12.8	0.0	2.5	2	0	0	2	2	2	2	RNA	helicase
Mg_chelatase	PF01078.21	gi|408402847|ref|YP_006860830.1|	-	6e-06	25.8	0.9	0.04	13.3	0.1	2.7	2	0	0	2	2	2	2	Magnesium	chelatase,	subunit	ChlI
ATPase	PF06745.13	gi|408402847|ref|YP_006860830.1|	-	8.8e-06	25.2	1.6	0.18	11.1	0.1	3.4	2	1	1	3	3	3	2	KaiC
PhoH	PF02562.16	gi|408402847|ref|YP_006860830.1|	-	1.6e-05	24.5	0.4	0.17	11.3	0.0	2.5	2	0	0	2	2	2	2	PhoH-like	protein
ABC_tran	PF00005.27	gi|408402847|ref|YP_006860830.1|	-	3.5e-05	24.3	0.0	0.49	10.9	0.0	2.5	2	0	0	2	2	2	2	ABC	transporter
Zeta_toxin	PF06414.12	gi|408402847|ref|YP_006860830.1|	-	4.3e-05	22.9	0.2	0.19	11.0	0.0	2.5	2	0	0	2	2	2	2	Zeta	toxin
AAA_24	PF13479.6	gi|408402847|ref|YP_006860830.1|	-	4.8e-05	23.2	0.0	0.19	11.4	0.0	2.5	2	0	0	2	2	2	2	AAA	domain
Bac_DnaA	PF00308.18	gi|408402847|ref|YP_006860830.1|	-	0.00013	21.8	0.1	0.27	11.0	0.0	2.8	3	0	0	3	3	2	2	Bacterial	dnaA	protein
AAA_25	PF13481.6	gi|408402847|ref|YP_006860830.1|	-	0.00018	21.2	1.6	1.7	8.2	0.2	3.5	2	1	1	3	3	3	1	AAA	domain
DUF815	PF05673.13	gi|408402847|ref|YP_006860830.1|	-	0.00039	19.7	0.0	0.46	9.6	0.0	2.4	2	0	0	2	2	2	2	Protein	of	unknown	function	(DUF815)
NACHT	PF05729.12	gi|408402847|ref|YP_006860830.1|	-	0.0004	20.3	0.4	0.74	9.7	0.1	2.9	3	0	0	3	3	2	2	NACHT	domain
NB-ARC	PF00931.22	gi|408402847|ref|YP_006860830.1|	-	0.001	18.3	0.1	1.5	8.0	0.0	2.7	2	0	0	2	2	2	2	NB-ARC	domain
Cytidylate_kin	PF02224.18	gi|408402847|ref|YP_006860830.1|	-	0.0011	18.8	0.2	0.57	9.9	0.0	2.4	2	0	0	2	2	2	1	Cytidylate	kinase
AAA_3	PF07726.11	gi|408402847|ref|YP_006860830.1|	-	0.002	18.0	0.0	0.98	9.3	0.0	2.6	2	0	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
ATPase_2	PF01637.18	gi|408402847|ref|YP_006860830.1|	-	0.0039	17.1	0.0	0.68	9.8	0.0	2.8	2	1	0	2	2	2	1	ATPase	domain	predominantly	from	Archaea
AAA_30	PF13604.6	gi|408402847|ref|YP_006860830.1|	-	0.0042	16.8	1.2	3	7.5	0.1	2.7	3	0	0	3	3	2	1	AAA	domain
DUF2075	PF09848.9	gi|408402847|ref|YP_006860830.1|	-	0.0049	16.1	0.3	3.1	6.9	0.0	2.5	3	0	0	3	3	2	1	Uncharacterized	conserved	protein	(DUF2075)
Sigma54_activ_2	PF14532.6	gi|408402847|ref|YP_006860830.1|	-	0.0087	16.2	0.0	2.9	8.0	0.0	2.7	2	0	0	2	2	2	1	Sigma-54	interaction	domain
ATP-synt_ab	PF00006.25	gi|408402847|ref|YP_006860830.1|	-	0.012	15.3	0.1	4.9	6.7	0.0	2.5	2	1	0	2	2	2	0	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
Guanylate_kin	PF00625.21	gi|408402847|ref|YP_006860830.1|	-	0.012	15.3	1.6	19	4.9	0.0	4.3	4	2	1	5	5	5	0	Guanylate	kinase
Parvo_NS1	PF01057.17	gi|408402847|ref|YP_006860830.1|	-	0.012	14.7	0.0	2.1	7.4	0.0	2.2	2	0	0	2	2	2	0	Parvovirus	non-structural	protein	NS1
T2SSE	PF00437.20	gi|408402847|ref|YP_006860830.1|	-	0.013	14.6	0.0	4.9	6.1	0.0	2.4	2	0	0	2	2	2	0	Type	II/IV	secretion	system	protein
AAA_11	PF13086.6	gi|408402847|ref|YP_006860830.1|	-	0.016	15.0	0.0	2.1	8.1	0.0	2.3	2	0	0	2	2	2	0	AAA	domain
ResIII	PF04851.15	gi|408402847|ref|YP_006860830.1|	-	0.02	14.9	0.0	3.7	7.5	0.0	2.6	2	1	1	3	3	2	0	Type	III	restriction	enzyme,	res	subunit
AAA_29	PF13555.6	gi|408402847|ref|YP_006860830.1|	-	0.021	14.5	0.4	4.2	7.2	0.1	2.5	2	0	0	2	2	2	0	P-loop	containing	region	of	AAA	domain
TniB	PF05621.11	gi|408402847|ref|YP_006860830.1|	-	0.025	14.0	0.0	6.8	6.1	0.0	2.9	4	0	0	4	4	2	0	Bacterial	TniB	protein
CPT	PF07931.12	gi|408402847|ref|YP_006860830.1|	-	0.031	14.1	0.0	2.2	8.1	0.0	2.5	2	0	0	2	2	2	0	Chloramphenicol	phosphotransferase-like	protein
PduV-EutP	PF10662.9	gi|408402847|ref|YP_006860830.1|	-	0.044	13.5	0.0	12	5.7	0.0	2.5	2	0	0	2	2	2	0	Ethanolamine	utilisation	-	propanediol	utilisation
AFG1_ATPase	PF03969.16	gi|408402847|ref|YP_006860830.1|	-	0.066	12.1	0.0	7.4	5.3	0.0	2.3	2	0	0	2	2	2	0	AFG1-like	ATPase
NTPase_1	PF03266.15	gi|408402847|ref|YP_006860830.1|	-	0.1	12.5	3.4	17	5.3	0.0	3.6	2	2	1	3	3	3	0	NTPase
AAA_17	PF13207.6	gi|408402847|ref|YP_006860830.1|	-	0.12	12.8	0.0	4.7	7.6	0.0	2.8	2	0	0	2	2	2	0	AAA	domain
Rad17	PF03215.15	gi|408402847|ref|YP_006860830.1|	-	0.12	12.3	1.1	34	4.3	0.1	3.3	2	2	1	3	3	3	0	Rad17	P-loop	domain
SRPRB	PF09439.10	gi|408402847|ref|YP_006860830.1|	-	0.14	11.6	0.1	21	4.5	0.0	2.5	2	1	0	2	2	2	0	Signal	recognition	particle	receptor	beta	subunit
AAA_19	PF13245.6	gi|408402847|ref|YP_006860830.1|	-	2.3	8.5	7.5	3.8	7.8	0.2	3.2	3	1	1	4	4	2	0	AAA	domain
Usp	PF00582.26	gi|408402849|ref|YP_006860832.1|	-	5.7e-27	95.0	0.1	7.9e-27	94.5	0.1	1.2	1	0	0	1	1	1	1	Universal	stress	protein	family
Pom	PF17251.2	gi|408402849|ref|YP_006860832.1|	-	0.022	14.1	0.0	0.023	14.0	0.0	1.1	1	0	0	1	1	1	0	Protochlamydia	outer	membrane	protein
SRP54	PF00448.22	gi|408402849|ref|YP_006860832.1|	-	0.041	13.5	0.0	0.068	12.8	0.0	1.4	1	0	0	1	1	1	0	SRP54-type	protein,	GTPase	domain
DUF3292	PF11696.8	gi|408402851|ref|YP_006860834.1|	-	0.072	11.5	0.0	0.082	11.3	0.0	1.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3292)
z-alpha	PF02295.17	gi|408402852|ref|YP_006860835.1|	-	0.0027	17.7	0.0	0.0028	17.7	0.0	1.0	1	0	0	1	1	1	1	Adenosine	deaminase	z-alpha	domain
LexA_DNA_bind	PF01726.16	gi|408402852|ref|YP_006860835.1|	-	0.0083	15.9	0.0	0.012	15.4	0.0	1.3	1	1	0	1	1	1	1	LexA	DNA	binding	domain
TFIIB	PF00382.19	gi|408402853|ref|YP_006860836.1|	-	1.2e-28	98.9	4.1	1.5e-14	53.8	0.5	2.2	2	0	0	2	2	2	2	Transcription	factor	TFIIB	repeat
TF_Zn_Ribbon	PF08271.12	gi|408402853|ref|YP_006860836.1|	-	4.2e-08	32.6	0.2	6.9e-08	31.9	0.2	1.4	1	0	0	1	1	1	1	TFIIB	zinc-binding
Sigma70_r4	PF04545.16	gi|408402853|ref|YP_006860836.1|	-	7.2e-06	25.4	0.0	0.0023	17.4	0.0	2.4	2	0	0	2	2	2	1	Sigma-70,	region	4
HTH_3	PF01381.22	gi|408402853|ref|YP_006860836.1|	-	5.7e-05	23.1	0.1	0.5	10.5	0.0	3.3	3	0	0	3	3	3	2	Helix-turn-helix
HTH_Tnp_ISL3	PF13542.6	gi|408402853|ref|YP_006860836.1|	-	0.00058	19.2	0.3	0.074	12.5	0.0	2.6	2	0	0	2	2	2	1	Helix-turn-helix	domain	of	transposase	family	ISL3
HTH_11	PF08279.12	gi|408402853|ref|YP_006860836.1|	-	0.0012	18.7	0.1	0.0056	16.6	0.0	2.1	2	0	0	2	2	2	1	HTH	domain
HTH_AsnC-type	PF13404.6	gi|408402853|ref|YP_006860836.1|	-	0.0036	17.1	0.1	0.15	11.9	0.0	3.1	3	0	0	3	3	3	1	AsnC-type	helix-turn-helix	domain
HTH_Crp_2	PF13545.6	gi|408402853|ref|YP_006860836.1|	-	0.0068	16.4	0.1	0.033	14.2	0.0	2.1	2	0	0	2	2	2	1	Crp-like	helix-turn-helix	domain
Phage_terminase	PF10668.9	gi|408402853|ref|YP_006860836.1|	-	0.0072	16.3	0.4	0.86	9.7	0.0	2.7	3	0	0	3	3	2	1	Phage	terminase	small	subunit
GerE	PF00196.19	gi|408402853|ref|YP_006860836.1|	-	0.02	14.5	1.8	0.047	13.2	0.0	2.5	3	0	0	3	3	3	0	Bacterial	regulatory	proteins,	luxR	family
RB_B	PF01857.20	gi|408402853|ref|YP_006860836.1|	-	0.027	14.5	0.1	0.045	13.8	0.1	1.4	1	0	0	1	1	1	0	Retinoblastoma-associated	protein	B	domain
HTH_5	PF01022.20	gi|408402853|ref|YP_006860836.1|	-	0.038	13.9	0.0	26	4.8	0.0	3.6	4	0	0	4	4	4	0	Bacterial	regulatory	protein,	arsR	family
TetR_N	PF00440.23	gi|408402853|ref|YP_006860836.1|	-	0.068	13.0	0.1	8.7	6.2	0.0	2.7	2	0	0	2	2	2	0	Bacterial	regulatory	proteins,	tetR	family
Sigma70_r4_2	PF08281.12	gi|408402853|ref|YP_006860836.1|	-	0.077	12.7	0.1	0.32	10.7	0.0	2.1	2	0	0	2	2	2	0	Sigma-70,	region	4
HTH_23	PF13384.6	gi|408402853|ref|YP_006860836.1|	-	0.12	12.2	0.1	1.2	9.1	0.0	2.3	2	0	0	2	2	2	0	Homeodomain-like	domain
MerR	PF00376.23	gi|408402853|ref|YP_006860836.1|	-	0.14	11.9	0.1	4.4	7.2	0.0	2.7	2	0	0	2	2	2	0	MerR	family	regulatory	protein
LacI	PF00356.21	gi|408402853|ref|YP_006860836.1|	-	0.16	11.7	1.5	4.5	7.1	0.1	2.8	2	0	0	2	2	2	0	Bacterial	regulatory	proteins,	lacI	family
ComGF	PF15980.5	gi|408402854|ref|YP_006860837.1|	-	0.00016	22.0	0.1	0.00022	21.5	0.1	1.2	1	0	0	1	1	1	1	Putative	Competence	protein	ComGF
RecR	PF02132.15	gi|408402856|ref|YP_006860839.1|	-	0.0012	18.4	2.2	0.0054	16.3	0.5	2.0	2	0	0	2	2	2	1	RecR	protein
NOB1_Zn_bind	PF08772.11	gi|408402856|ref|YP_006860839.1|	-	0.18	12.0	3.5	3.1	8.0	0.3	2.1	1	1	1	2	2	2	0	Nin	one	binding	(NOB1)	Zn-ribbon	like
Cript	PF10235.9	gi|408402856|ref|YP_006860839.1|	-	0.28	11.8	5.2	4.3	8.0	0.5	2.0	1	1	1	2	2	2	0	Microtubule-associated	protein	CRIPT
AsnC_trans_reg	PF01037.21	gi|408402857|ref|YP_006860840.1|	-	9.2e-06	25.5	0.0	1.3e-05	25.0	0.0	1.2	1	0	0	1	1	1	1	Lrp/AsnC	ligand	binding	domain
DUF2340	PF10209.9	gi|408402857|ref|YP_006860840.1|	-	0.088	13.3	0.0	0.11	13.0	0.0	1.1	1	0	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2340)
Cys_rich_KTR	PF14205.6	gi|408402859|ref|YP_006860842.1|	-	0.0073	16.1	0.1	0.16	11.8	0.1	2.1	2	0	0	2	2	2	1	Cysteine-rich	KTR
DUF3785	PF12653.7	gi|408402859|ref|YP_006860842.1|	-	0.017	15.3	0.2	0.023	14.8	0.2	1.3	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF3785)
R2K_2	PF18299.1	gi|408402859|ref|YP_006860842.1|	-	0.1	12.5	0.0	7.3	6.4	0.0	2.0	1	1	1	2	2	2	0	ATP-grasp	domain,	R2K	clade	family	2
EzrA	PF06160.12	gi|408402861|ref|YP_006860844.1|	-	0.011	14.0	1.0	0.011	13.9	1.0	1.0	1	0	0	1	1	1	0	Septation	ring	formation	regulator,	EzrA
Sipho_Gp157	PF05565.11	gi|408402861|ref|YP_006860844.1|	-	0.014	15.4	0.4	0.015	15.3	0.4	1.0	1	0	0	1	1	1	0	Siphovirus	Gp157
Jnk-SapK_ap_N	PF09744.9	gi|408402861|ref|YP_006860844.1|	-	0.019	15.2	1.1	0.023	14.9	1.1	1.0	1	0	0	1	1	1	0	JNK_SAPK-associated	protein-1
Snapin_Pallidin	PF14712.6	gi|408402861|ref|YP_006860844.1|	-	0.02	15.3	0.6	0.034	14.5	0.4	1.5	1	1	1	2	2	2	0	Snapin/Pallidin
XhlA	PF10779.9	gi|408402861|ref|YP_006860844.1|	-	0.031	14.5	0.9	0.045	14.0	0.9	1.3	1	0	0	1	1	1	0	Haemolysin	XhlA
DUF4988	PF16378.5	gi|408402861|ref|YP_006860844.1|	-	0.049	13.3	0.8	0.065	12.9	0.8	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function
bZIP_1	PF00170.21	gi|408402861|ref|YP_006860844.1|	-	0.084	13.0	3.4	0.11	12.6	2.7	1.5	1	1	1	2	2	2	0	bZIP	transcription	factor
DnaJ_CXXCXGXG	PF00684.19	gi|408402862|ref|YP_006860845.1|	-	0.0019	18.5	0.9	0.0028	18.0	0.9	1.3	1	0	0	1	1	1	1	DnaJ	central	domain
Ribosomal_S14	PF00253.21	gi|408402863|ref|YP_006860846.1|	-	0.023	14.4	0.1	0.03	14.1	0.1	1.2	1	0	0	1	1	1	0	Ribosomal	protein	S14p/S29e
PyrI_C	PF02748.15	gi|408402863|ref|YP_006860846.1|	-	0.039	13.9	0.4	0.055	13.4	0.4	1.3	1	0	0	1	1	1	0	Aspartate	carbamoyltransferase	regulatory	chain,	metal	binding	domain
Zn-ribbon_8	PF09723.10	gi|408402863|ref|YP_006860846.1|	-	0.045	13.9	0.1	0.069	13.3	0.1	1.3	1	0	0	1	1	1	0	Zinc	ribbon	domain
zinc_ribbon_6	PF14599.6	gi|408402863|ref|YP_006860846.1|	-	0.05	13.6	0.2	0.055	13.5	0.2	1.2	1	0	0	1	1	1	0	Zinc-ribbon
YyzF	PF14116.6	gi|408402864|ref|YP_006860847.1|	-	0.044	13.8	0.3	0.3	11.2	0.1	2.0	2	0	0	2	2	2	0	YyzF-like	protein
Zn_ribbon_2	PF12674.7	gi|408402864|ref|YP_006860847.1|	-	0.19	12.4	1.3	3.3	8.4	2.1	1.9	1	1	1	2	2	2	0	Putative	zinc	ribbon	domain
AsnC_trans_reg	PF01037.21	gi|408402865|ref|YP_006860848.1|	-	7.7e-07	29.0	0.1	8.4e-07	28.9	0.1	1.1	1	0	0	1	1	1	1	Lrp/AsnC	ligand	binding	domain
AsnC_trans_reg	PF01037.21	gi|408402866|ref|YP_006860849.1|	-	4e-07	29.9	0.0	4.9e-07	29.6	0.0	1.1	1	0	0	1	1	1	1	Lrp/AsnC	ligand	binding	domain
CbtA	PF09490.10	gi|408402867|ref|YP_006860850.1|	-	1.6e-23	83.7	14.7	2.1e-23	83.4	14.7	1.1	1	0	0	1	1	1	1	Probable	cobalt	transporter	subunit	(CbtA)
Peptidase_U4	PF03419.13	gi|408402867|ref|YP_006860850.1|	-	0.0053	16.1	3.1	0.0053	16.1	3.1	1.8	1	1	1	2	2	2	1	Sporulation	factor	SpoIIGA
BaxI_1	PF12811.7	gi|408402867|ref|YP_006860850.1|	-	0.11	12.1	8.3	1.6	8.3	8.3	2.4	1	1	0	1	1	1	0	Bax	inhibitor	1	like
Acyl_transf_3	PF01757.22	gi|408402867|ref|YP_006860850.1|	-	0.13	11.3	7.2	0.19	10.8	7.2	1.2	1	0	0	1	1	1	0	Acyltransferase	family
GvpG	PF05120.12	gi|408402868|ref|YP_006860851.1|	-	0.02	14.9	0.3	0.027	14.5	0.3	1.2	1	0	0	1	1	1	0	Gas	vesicle	protein	G
HTH_OrfB_IS605	PF12323.8	gi|408402869|ref|YP_006860852.1|	-	0.013	15.0	0.1	0.026	14.0	0.1	1.6	1	0	0	1	1	1	0	Helix-turn-helix	domain
YcaO	PF02624.16	gi|408402872|ref|YP_006860855.1|	-	1.3e-79	267.8	0.0	1.9e-78	264.0	0.0	2.1	1	1	0	1	1	1	1	YcaO	cyclodehydratase,	ATP-ad	Mg2+-binding
TfuA	PF07812.12	gi|408402873|ref|YP_006860856.1|	-	1.8e-36	124.5	0.0	2.5e-36	124.0	0.0	1.2	1	0	0	1	1	1	1	TfuA-like	protein
Response_reg	PF00072.24	gi|408402874|ref|YP_006860857.1|	-	4.9e-23	81.4	0.0	5.5e-23	81.3	0.0	1.0	1	0	0	1	1	1	1	Response	regulator	receiver	domain
Cob_adeno_trans	PF01923.18	gi|408402875|ref|YP_006860858.1|	-	3.3e-52	176.9	0.0	3.7e-52	176.8	0.0	1.0	1	0	0	1	1	1	1	Cobalamin	adenosyltransferase
zf-Di19	PF05605.12	gi|408402876|ref|YP_006860859.1|	-	0.00019	21.7	0.1	0.00023	21.4	0.1	1.1	1	0	0	1	1	1	1	Drought	induced	19	protein	(Di19),	zinc-binding
zf-C2H2	PF00096.26	gi|408402876|ref|YP_006860859.1|	-	0.00065	20.0	0.7	0.00085	19.7	0.7	1.2	1	0	0	1	1	1	1	Zinc	finger,	C2H2	type
zf-C2H2_4	PF13894.6	gi|408402876|ref|YP_006860859.1|	-	0.0013	19.4	0.2	0.0018	18.9	0.2	1.3	1	0	0	1	1	1	1	C2H2-type	zinc	finger
zf-C2H2_9	PF16293.5	gi|408402876|ref|YP_006860859.1|	-	0.003	17.4	0.1	0.0044	16.8	0.1	1.3	1	0	0	1	1	1	1	C2H2	type	zinc-finger	(1	copy)
zf-C2H2_2	PF12756.7	gi|408402876|ref|YP_006860859.1|	-	0.004	17.5	0.1	0.004	17.5	0.1	1.1	1	0	0	1	1	1	1	C2H2	type	zinc-finger	(2	copies)
zf-H2C2_2	PF13465.6	gi|408402876|ref|YP_006860859.1|	-	0.0092	16.4	3.5	0.8	10.2	0.4	2.1	2	0	0	2	2	2	2	Zinc-finger	double	domain
HNH	PF01844.23	gi|408402876|ref|YP_006860859.1|	-	0.055	13.7	0.3	0.085	13.1	0.3	1.3	1	0	0	1	1	1	0	HNH	endonuclease
DUF4187	PF13821.6	gi|408402876|ref|YP_006860859.1|	-	0.059	13.2	0.1	0.092	12.5	0.1	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4187)
zf-C2H2_jaz	PF12171.8	gi|408402876|ref|YP_006860859.1|	-	0.073	13.4	0.2	0.073	13.4	0.2	1.5	2	0	0	2	2	2	0	Zinc-finger	double-stranded	RNA-binding
zinc_ribbon_5	PF13719.6	gi|408402876|ref|YP_006860859.1|	-	0.094	12.5	0.0	0.13	12.0	0.0	1.3	1	0	0	1	1	1	0	zinc-ribbon	domain
HD_3	PF13023.6	gi|408402877|ref|YP_006860860.1|	-	9.2e-39	133.0	0.2	1.1e-38	132.7	0.2	1.1	1	0	0	1	1	1	1	HD	domain
HD_2	PF12917.7	gi|408402877|ref|YP_006860860.1|	-	1.1e-15	57.8	0.1	1.6e-15	57.3	0.1	1.2	1	0	0	1	1	1	1	HD	containing	hydrolase-like	enzyme
HD	PF01966.22	gi|408402877|ref|YP_006860860.1|	-	0.0001	22.5	0.2	0.00019	21.7	0.2	1.5	1	1	0	1	1	1	1	HD	domain
JAKMIP_CC3	PF16034.5	gi|408402877|ref|YP_006860860.1|	-	0.022	14.7	0.2	0.029	14.3	0.2	1.2	1	0	0	1	1	1	0	JAKMIP	CC3	domain
RPN13_C	PF16550.5	gi|408402877|ref|YP_006860860.1|	-	0.12	12.5	0.0	0.23	11.6	0.0	1.4	1	0	0	1	1	1	0	UCH-binding	domain
FMN_red	PF03358.15	gi|408402879|ref|YP_006860862.1|	-	1.4e-33	115.9	0.0	1.8e-33	115.5	0.0	1.2	1	0	0	1	1	1	1	NADPH-dependent	FMN	reductase
Flavodoxin_2	PF02525.17	gi|408402879|ref|YP_006860862.1|	-	6.5e-06	26.0	0.0	1.3e-05	25.0	0.0	1.4	1	1	0	1	1	1	1	Flavodoxin-like	fold
DDE_Tnp_1	PF01609.21	gi|408402880|ref|YP_006860863.1|	-	0.0002	21.1	0.0	0.00041	20.0	0.0	1.6	1	1	0	1	1	1	1	Transposase	DDE	domain
DUF1815	PF08844.10	gi|408402880|ref|YP_006860863.1|	-	0.17	11.9	0.2	0.87	9.6	0.1	2.0	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF1815)
GSDH	PF07995.11	gi|408402882|ref|YP_006860865.1|	-	0.031	13.6	0.0	0.031	13.6	0.0	1.0	1	0	0	1	1	1	0	Glucose	/	Sorbosone	dehydrogenase
GSDH	PF07995.11	gi|408402883|ref|YP_006860866.1|	-	7.6e-10	38.6	0.0	1e-09	38.2	0.0	1.1	1	0	0	1	1	1	1	Glucose	/	Sorbosone	dehydrogenase
Thymosin	PF01290.20	gi|408402883|ref|YP_006860866.1|	-	0.17	11.7	0.1	0.29	10.9	0.1	1.4	1	0	0	1	1	1	0	Thymosin	beta-4	family
GSDH	PF07995.11	gi|408402884|ref|YP_006860867.1|	-	1.8e-08	34.1	0.0	2.1e-08	33.8	0.0	1.0	1	0	0	1	1	1	1	Glucose	/	Sorbosone	dehydrogenase
AraC_binding	PF02311.19	gi|408402884|ref|YP_006860867.1|	-	0.15	11.9	0.0	0.22	11.4	0.0	1.2	1	0	0	1	1	1	0	AraC-like	ligand	binding	domain
Saccharop_dh_N	PF04455.12	gi|408402885|ref|YP_006860868.1|	-	1.9e-37	127.7	0.0	6.3e-37	126.0	0.0	1.9	2	0	0	2	2	2	1	LOR/SDH	bifunctional	enzyme	conserved	region
DS	PF01916.17	gi|408402885|ref|YP_006860868.1|	-	0.017	14.4	0.1	0.21	10.8	0.0	2.2	1	1	1	2	2	2	0	Deoxyhypusine	synthase
Band_7	PF01145.25	gi|408402886|ref|YP_006860869.1|	-	0.0024	17.9	0.1	0.0031	17.6	0.1	1.2	1	0	0	1	1	1	1	SPFH	domain	/	Band	7	family
GPI2	PF06432.11	gi|408402886|ref|YP_006860869.1|	-	0.25	10.7	1.2	0.3	10.5	1.2	1.0	1	0	0	1	1	1	0	Phosphatidylinositol	N-acetylglucosaminyltransferase
Band_7	PF01145.25	gi|408402887|ref|YP_006860870.1|	-	4.4e-12	46.4	0.7	5.4e-12	46.1	0.7	1.0	1	0	0	1	1	1	1	SPFH	domain	/	Band	7	family
GatB_Yqey	PF02637.18	gi|408402887|ref|YP_006860870.1|	-	0.041	13.8	0.1	0.046	13.6	0.1	1.2	1	0	0	1	1	1	0	GatB	domain
Sgf11_N	PF18519.1	gi|408402887|ref|YP_006860870.1|	-	0.044	13.3	1.6	0.12	11.9	1.6	1.9	1	0	0	1	1	1	0	SAGA-associated	factor	11	N-terminal	domain
Tyr_Deacylase	PF02580.16	gi|408402887|ref|YP_006860870.1|	-	0.049	14.2	0.0	0.056	14.0	0.0	1.2	1	0	0	1	1	1	0	D-Tyr-tRNA(Tyr)	deacylase
Speriolin_C	PF15059.6	gi|408402887|ref|YP_006860870.1|	-	0.055	13.6	0.2	0.072	13.2	0.2	1.1	1	0	0	1	1	1	0	Speriolin	C-terminus
SelR	PF01641.18	gi|408402889|ref|YP_006860872.1|	-	1.6e-08	34.7	0.0	1.7e-08	34.5	0.0	1.0	1	0	0	1	1	1	1	SelR	domain
zf-C2HC5	PF06221.13	gi|408402889|ref|YP_006860872.1|	-	0.064	13.3	0.1	0.081	12.9	0.1	1.1	1	0	0	1	1	1	0	Putative	zinc	finger	motif,	C2HC5-type
SelR	PF01641.18	gi|408402890|ref|YP_006860873.1|	-	1.1e-13	51.3	0.0	1.2e-13	51.2	0.0	1.0	1	0	0	1	1	1	1	SelR	domain
GatB_N	PF02934.15	gi|408402892|ref|YP_006860875.1|	-	9.4e-95	317.1	0.0	1.3e-94	316.6	0.0	1.2	1	0	0	1	1	1	1	GatB/GatE	catalytic	domain
GatB_Yqey	PF02637.18	gi|408402892|ref|YP_006860875.1|	-	7.1e-33	113.6	2.1	1.1e-32	113.0	2.1	1.3	1	0	0	1	1	1	1	GatB	domain
Amidase	PF01425.21	gi|408402893|ref|YP_006860876.1|	-	1.2e-152	509.1	0.3	1.3e-152	508.9	0.3	1.0	1	0	0	1	1	1	1	Amidase
Glu-tRNAGln	PF02686.15	gi|408402894|ref|YP_006860877.1|	-	1.1e-07	32.0	0.1	1.5e-07	31.6	0.1	1.2	1	0	0	1	1	1	1	Glu-tRNAGln	amidotransferase	C	subunit
tRNA-synt_2	PF00152.20	gi|408402895|ref|YP_006860878.1|	-	2.4e-81	273.2	0.0	2.9e-81	273.0	0.0	1.1	1	0	0	1	1	1	1	tRNA	synthetases	class	II	(D,	K	and	N)
tRNA_anti-codon	PF01336.25	gi|408402895|ref|YP_006860878.1|	-	1.8e-13	50.3	0.0	2.9e-13	49.6	0.0	1.3	1	0	0	1	1	1	1	OB-fold	nucleic	acid	binding	domain
tRNA-synt_2d	PF01409.20	gi|408402895|ref|YP_006860878.1|	-	0.001	18.6	0.5	0.0092	15.5	0.0	2.3	3	0	0	3	3	3	1	tRNA	synthetases	class	II	core	domain	(F)
Response_reg	PF00072.24	gi|408402896|ref|YP_006860879.1|	-	7.5e-20	71.2	0.0	8.6e-20	71.0	0.0	1.0	1	0	0	1	1	1	1	Response	regulator	receiver	domain
OKR_DC_1_N	PF03709.15	gi|408402896|ref|YP_006860879.1|	-	0.081	13.2	0.0	0.11	12.8	0.0	1.2	1	0	0	1	1	1	0	Orn/Lys/Arg	decarboxylase,	N-terminal	domain
DHHA1	PF02272.19	gi|408402897|ref|YP_006860880.1|	-	3.1e-06	27.7	2.1	3.1e-06	27.7	2.1	1.8	2	0	0	2	2	2	1	DHHA1	domain
tRNA_SAD	PF07973.14	gi|408402897|ref|YP_006860880.1|	-	0.04	14.0	0.0	0.11	12.6	0.0	1.8	1	0	0	1	1	1	0	Threonyl	and	Alanyl	tRNA	synthetase	second	additional	domain
DUF1297	PF06973.12	gi|408402898|ref|YP_006860881.1|	-	2.6e-75	252.1	0.0	3.4e-75	251.7	0.0	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1297)
DUF1246	PF06849.12	gi|408402898|ref|YP_006860881.1|	-	7.7e-36	122.7	0.0	1.2e-35	122.2	0.0	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1246)
CPSase_L_D2	PF02786.17	gi|408402898|ref|YP_006860881.1|	-	0.05	13.1	0.0	0.093	12.2	0.0	1.5	1	0	0	1	1	1	0	Carbamoyl-phosphate	synthase	L	chain,	ATP	binding	domain
Ehbp	PF10622.9	gi|408402898|ref|YP_006860881.1|	-	0.13	12.3	0.0	0.26	11.4	0.0	1.5	1	0	0	1	1	1	0	Energy-converting	hydrogenase	B	subunit	P	(EhbP)
dCMP_cyt_deam_1	PF00383.23	gi|408402899|ref|YP_006860882.1|	-	1.3e-06	28.2	0.0	4.1e-06	26.6	0.0	1.7	2	0	0	2	2	2	1	Cytidine	and	deoxycytidylate	deaminase	zinc-binding	region
MafB19-deam	PF14437.6	gi|408402899|ref|YP_006860882.1|	-	0.00032	20.4	0.0	0.00066	19.4	0.0	1.4	1	0	0	1	1	1	1	MafB19-like	deaminase
OTT_1508_deam	PF14441.6	gi|408402899|ref|YP_006860882.1|	-	0.03	14.3	0.0	0.064	13.3	0.0	1.5	1	0	0	1	1	1	0	OTT_1508-like	deaminase
SNAD4	PF18750.1	gi|408402899|ref|YP_006860882.1|	-	0.19	11.8	0.0	0.38	10.9	0.0	1.4	1	0	0	1	1	1	0	Secreted	Novel	AID/APOBEC-like	Deaminase	4
Invasin_D3	PF09134.10	gi|408402900|ref|YP_006860883.1|	-	0.1	12.9	0.0	0.42	11.0	0.0	2.1	1	0	0	1	1	1	0	Invasin,	domain	3
FliG_N	PF14842.6	gi|408402901|ref|YP_006860884.1|	-	0.068	13.7	0.6	0.19	12.3	0.6	1.7	1	0	0	1	1	1	0	FliG	N-terminal	domain
DUF1542	PF07564.11	gi|408402901|ref|YP_006860884.1|	-	0.45	10.6	8.6	1.4	9.0	0.5	2.9	3	0	0	3	3	3	0	Domain	of	Unknown	Function	(DUF1542)
FdhE	PF04216.12	gi|408402901|ref|YP_006860884.1|	-	0.59	10.0	2.2	2.1	8.2	0.2	2.0	2	0	0	2	2	2	0	Protein	involved	in	formate	dehydrogenase	formation
YtkA	PF13115.6	gi|408402903|ref|YP_006860886.1|	-	0.0026	18.3	0.0	0.0037	17.8	0.0	1.3	1	0	0	1	1	1	1	YtkA-like
HTH_24	PF13412.6	gi|408402904|ref|YP_006860887.1|	-	1.1e-17	63.3	0.0	3.8e-08	32.8	0.0	2.3	2	0	0	2	2	2	2	Winged	helix-turn-helix	DNA-binding
HTH_5	PF01022.20	gi|408402904|ref|YP_006860887.1|	-	2.6e-17	62.4	0.1	2.3e-11	43.4	0.0	2.4	2	0	0	2	2	2	2	Bacterial	regulatory	protein,	arsR	family
MarR_2	PF12802.7	gi|408402904|ref|YP_006860887.1|	-	3.5e-11	42.8	0.1	1.7e-05	24.6	0.0	2.4	2	1	0	2	2	2	2	MarR	family
HTH_20	PF12840.7	gi|408402904|ref|YP_006860887.1|	-	4.1e-11	42.8	0.2	0.00037	20.5	0.0	2.3	2	0	0	2	2	2	2	Helix-turn-helix	domain
MarR	PF01047.22	gi|408402904|ref|YP_006860887.1|	-	2.1e-07	30.7	0.1	0.011	15.7	0.0	2.5	3	0	0	3	3	2	2	MarR	family
HTH_34	PF13601.6	gi|408402904|ref|YP_006860887.1|	-	2e-06	27.9	0.1	0.059	13.6	0.0	2.2	2	0	0	2	2	2	2	Winged	helix	DNA-binding	domain
TrmB	PF01978.19	gi|408402904|ref|YP_006860887.1|	-	3.2e-06	26.9	0.1	0.0008	19.2	0.0	2.4	2	0	0	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
Rrf2	PF02082.20	gi|408402904|ref|YP_006860887.1|	-	1.8e-05	25.0	0.1	0.01	16.2	0.0	2.2	2	0	0	2	2	2	1	Transcriptional	regulator
HTH_IclR	PF09339.10	gi|408402904|ref|YP_006860887.1|	-	0.00017	21.3	0.0	0.087	12.6	0.0	2.3	2	0	0	2	2	2	2	IclR	helix-turn-helix	domain
Penicillinase_R	PF03965.16	gi|408402904|ref|YP_006860887.1|	-	0.00021	21.6	0.5	0.24	11.8	0.0	3.0	2	2	1	3	3	3	2	Penicillinase	repressor
HTH_Crp_2	PF13545.6	gi|408402904|ref|YP_006860887.1|	-	0.00088	19.2	0.1	0.024	14.6	0.0	2.2	2	0	0	2	2	2	1	Crp-like	helix-turn-helix	domain
Cdc6_C	PF09079.11	gi|408402904|ref|YP_006860887.1|	-	0.0017	18.3	0.1	0.5	10.4	0.0	2.4	2	0	0	2	2	2	1	CDC6,	C	terminal	winged	helix	domain
RP-C	PF03428.13	gi|408402904|ref|YP_006860887.1|	-	0.0032	17.2	0.2	0.34	10.6	0.0	2.2	1	1	1	2	2	2	1	Replication	protein	C	N-terminal	domain
HTH_40	PF14493.6	gi|408402904|ref|YP_006860887.1|	-	0.0058	17.1	0.1	0.11	13.0	0.0	2.5	1	1	1	2	2	2	1	Helix-turn-helix	domain
Sulfolobus_pRN	PF05584.11	gi|408402904|ref|YP_006860887.1|	-	0.011	15.8	0.5	0.21	11.7	0.0	2.3	2	0	0	2	2	2	0	Sulfolobus	plasmid	regulatory	protein
LexA_DNA_bind	PF01726.16	gi|408402904|ref|YP_006860887.1|	-	0.023	14.5	0.2	0.65	9.8	0.0	2.6	2	1	0	2	2	2	0	LexA	DNA	binding	domain
HTH_DeoR	PF08220.12	gi|408402904|ref|YP_006860887.1|	-	0.034	13.9	0.0	0.084	12.6	0.0	1.6	1	0	0	1	1	1	0	DeoR-like	helix-turn-helix	domain
Rio2_N	PF09202.11	gi|408402904|ref|YP_006860887.1|	-	0.037	14.3	0.2	0.64	10.3	0.1	2.4	2	0	0	2	2	2	0	Rio2,	N-terminal
Mitoc_L55	PF09776.9	gi|408402904|ref|YP_006860887.1|	-	0.056	13.2	0.0	0.09	12.5	0.0	1.5	1	0	0	1	1	1	0	Mitochondrial	ribosomal	protein	L55
DprA_WH	PF17782.1	gi|408402904|ref|YP_006860887.1|	-	0.094	12.8	0.0	2.1	8.5	0.0	2.6	2	1	0	2	2	2	0	DprA	winged	helix	domain
CopC	PF04234.12	gi|408402906|ref|YP_006860889.1|	-	1e-16	61.7	0.1	2.5e-16	60.5	0.1	1.7	1	0	0	1	1	1	1	CopC	domain
SGL	PF08450.12	gi|408402906|ref|YP_006860889.1|	-	4e-12	46.3	1.5	1.9e-07	31.0	0.2	3.8	2	1	1	3	3	3	2	SMP-30/Gluconolactonase/LRE-like	region
CopD	PF05425.13	gi|408402906|ref|YP_006860889.1|	-	1.1e-09	38.6	26.1	5.7e-09	36.3	9.2	2.8	2	1	0	2	2	2	2	Copper	resistance	protein	D
Reg_prop	PF07494.11	gi|408402906|ref|YP_006860889.1|	-	3.2e-07	29.8	12.7	0.27	11.6	0.1	8.0	9	0	0	9	9	9	2	Two	component	regulator	propeller
NHL	PF01436.21	gi|408402906|ref|YP_006860889.1|	-	0.00013	21.8	0.8	4	7.6	0.0	4.6	5	0	0	5	5	5	2	NHL	repeat
SBBP	PF06739.11	gi|408402906|ref|YP_006860889.1|	-	0.00028	20.8	0.1	1.6	8.8	0.0	4.1	5	0	0	5	5	5	2	Beta-propeller	repeat
DUF4149	PF13664.6	gi|408402906|ref|YP_006860889.1|	-	0.0016	18.7	14.0	0.0049	17.2	4.5	2.8	2	1	0	2	2	2	2	Domain	of	unknown	function	(DUF4149)
DUF2530	PF10745.9	gi|408402906|ref|YP_006860889.1|	-	7.1	7.0	8.9	1.5	9.1	1.2	3.3	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF2530)
YtkA	PF13115.6	gi|408402908|ref|YP_006860891.1|	-	0.00057	20.4	0.0	0.0013	19.3	0.0	1.6	2	0	0	2	2	2	1	YtkA-like
Alanine_zipper	PF11839.8	gi|408402908|ref|YP_006860891.1|	-	0.02	15.2	8.9	0.037	14.4	8.9	1.4	1	0	0	1	1	1	0	Alanine-zipper,	major	outer	membrane	lipoprotein
Big_3_5	PF16640.5	gi|408402909|ref|YP_006860892.1|	-	0.022	14.9	0.3	1.7	8.9	0.0	2.7	2	1	1	3	3	3	0	Bacterial	Ig-like	domain	(group	3)
EMP24_GP25L	PF01105.24	gi|408402910|ref|YP_006860893.1|	-	0.018	15.0	0.0	0.024	14.6	0.0	1.3	1	0	0	1	1	1	0	emp24/gp25L/p24	family/GOLD
Tad	PF13400.6	gi|408402910|ref|YP_006860893.1|	-	0.028	14.7	3.1	3.6	8.0	0.0	2.2	2	0	0	2	2	2	0	Putative	Flp	pilus-assembly	TadE/G-like
Y_Y_Y	PF07495.13	gi|408402910|ref|YP_006860893.1|	-	0.06	13.3	0.0	0.13	12.3	0.0	1.6	1	0	0	1	1	1	0	Y_Y_Y	domain
GPI-anchored	PF10342.9	gi|408402910|ref|YP_006860893.1|	-	0.084	13.6	0.0	5.4	7.9	0.0	2.1	1	1	1	2	2	2	0	Ser-Thr-rich	glycosyl-phosphatidyl-inositol-anchored	membrane	family
Big_3	PF07523.12	gi|408402910|ref|YP_006860893.1|	-	0.11	12.8	0.2	0.26	11.6	0.0	1.7	2	0	0	2	2	2	0	Bacterial	Ig-like	domain	(group	3)
Copper-bind	PF00127.20	gi|408402911|ref|YP_006860894.1|	-	4.4e-09	36.7	0.4	1e-08	35.5	0.1	1.8	2	0	0	2	2	2	1	Copper	binding	proteins,	plastocyanin/azurin	family
Cupredoxin_1	PF13473.6	gi|408402911|ref|YP_006860894.1|	-	5e-09	36.2	0.3	3.5e-06	27.1	0.0	3.2	2	2	0	2	2	2	2	Cupredoxin-like	domain
DUF4772	PF15997.5	gi|408402911|ref|YP_006860894.1|	-	0.19	12.4	0.0	0.31	11.6	0.0	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4772)
Myco_19_kDa	PF05481.12	gi|408402911|ref|YP_006860894.1|	-	0.72	10.2	8.6	0.055	13.8	2.2	2.3	3	0	0	3	3	3	0	Mycobacterium	19	kDa	lipoprotein	antigen
Peripla_BP_2	PF01497.18	gi|408402912|ref|YP_006860895.1|	-	6.8e-15	55.3	0.0	9.9e-15	54.7	0.0	1.3	1	0	0	1	1	1	1	Periplasmic	binding	protein
Ribosomal_S10	PF00338.22	gi|408402913|ref|YP_006860896.1|	-	1.4e-25	89.4	0.0	1.5e-25	89.2	0.0	1.0	1	0	0	1	1	1	1	Ribosomal	protein	S10p/S20e
GTP_EFTU	PF00009.27	gi|408402914|ref|YP_006860897.1|	-	7.3e-49	165.9	0.0	1.2e-48	165.2	0.0	1.3	1	0	0	1	1	1	1	Elongation	factor	Tu	GTP	binding	domain
GTP_EFTU_D3	PF03143.17	gi|408402914|ref|YP_006860897.1|	-	2.5e-35	121.2	0.0	7e-35	119.7	0.0	1.8	1	0	0	1	1	1	1	Elongation	factor	Tu	C-terminal	domain
GTP_EFTU_D2	PF03144.25	gi|408402914|ref|YP_006860897.1|	-	9.6e-16	57.9	3.0	8.8e-15	54.9	1.3	2.5	2	0	0	2	2	2	1	Elongation	factor	Tu	domain	2
GTP_EFTU_D4	PF14578.6	gi|408402914|ref|YP_006860897.1|	-	3.4e-05	23.7	2.2	8.5e-05	22.4	2.2	1.7	1	0	0	1	1	1	1	Elongation	factor	Tu	domain	4
Amelogenin	PF02948.15	gi|408402914|ref|YP_006860897.1|	-	0.054	14.2	1.1	0.27	11.8	0.0	2.0	2	0	0	2	2	2	0	Amelogenin
FBPase_3	PF01950.16	gi|408402915|ref|YP_006860898.1|	-	1.3e-152	508.2	0.0	1.4e-152	508.0	0.0	1.0	1	0	0	1	1	1	1	Fructose-1,6-bisphosphatase
TIM	PF00121.18	gi|408402916|ref|YP_006860899.1|	-	9.8e-10	38.2	0.3	1.2e-08	34.6	0.0	2.0	1	1	1	2	2	2	1	Triosephosphate	isomerase
ThiG	PF05690.14	gi|408402916|ref|YP_006860899.1|	-	4.4e-05	22.9	1.0	4.4e-05	22.9	1.0	1.8	2	0	0	2	2	2	1	Thiazole	biosynthesis	protein	ThiG
IGPS	PF00218.21	gi|408402916|ref|YP_006860899.1|	-	0.00045	19.5	0.1	0.0022	17.2	0.0	1.9	2	0	0	2	2	2	1	Indole-3-glycerol	phosphate	synthase
His_biosynth	PF00977.21	gi|408402916|ref|YP_006860899.1|	-	0.049	13.1	0.2	0.11	12.0	0.2	1.5	1	0	0	1	1	1	0	Histidine	biosynthesis	protein
LOH1CR12	PF10158.9	gi|408402917|ref|YP_006860900.1|	-	0.041	13.9	0.0	0.86	9.6	0.0	2.1	2	0	0	2	2	2	0	Tumour	suppressor	protein
MarR	PF01047.22	gi|408402921|ref|YP_006860904.1|	-	0.12	12.3	0.0	0.33	10.9	0.0	1.7	1	0	0	1	1	1	0	MarR	family
Phage_integrase	PF00589.22	gi|408402924|ref|YP_006860907.1|	-	0.13	12.0	0.0	0.29	10.9	0.0	1.5	1	1	0	1	1	1	0	Phage	integrase	family
HTH_38	PF13936.6	gi|408402925|ref|YP_006860908.1|	-	0.00014	21.5	0.0	0.0004	20.1	0.0	1.8	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_24	PF13412.6	gi|408402925|ref|YP_006860908.1|	-	0.027	14.0	0.0	0.053	13.1	0.0	1.5	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
HTH_5	PF01022.20	gi|408402925|ref|YP_006860908.1|	-	0.043	13.7	0.0	0.43	10.5	0.0	2.4	3	0	0	3	3	3	0	Bacterial	regulatory	protein,	arsR	family
GspH	PF12019.8	gi|408402925|ref|YP_006860908.1|	-	0.11	13.0	0.0	0.15	12.5	0.0	1.3	1	0	0	1	1	1	0	Type	II	transport	protein	GspH
Transposase_20	PF02371.16	gi|408402927|ref|YP_006860910.1|	-	6.7e-19	68.0	0.0	9.8e-19	67.5	0.0	1.3	1	0	0	1	1	1	1	Transposase	IS116/IS110/IS902	family
DEDD_Tnp_IS110	PF01548.17	gi|408402929|ref|YP_006860912.1|	-	2.8e-17	63.0	0.0	3.3e-17	62.8	0.0	1.0	1	0	0	1	1	1	1	Transposase
Bac_luciferase	PF00296.20	gi|408402930|ref|YP_006860913.1|	-	2.7e-60	204.4	0.0	3.3e-60	204.1	0.0	1.0	1	0	0	1	1	1	1	Luciferase-like	monooxygenase
VAPB_antitox	PF02697.14	gi|408402932|ref|YP_006860915.1|	-	2.1e-07	31.6	0.4	3.6e-07	30.9	0.4	1.3	1	0	0	1	1	1	1	Putative	antitoxin
gag-asp_proteas	PF13975.6	gi|408402933|ref|YP_006860916.1|	-	2.6e-09	37.5	0.0	3.6e-09	37.1	0.0	1.1	1	0	0	1	1	1	1	gag-polyprotein	putative	aspartyl	protease
Asp_protease_2	PF13650.6	gi|408402933|ref|YP_006860916.1|	-	1.5e-08	35.1	0.0	2.2e-08	34.6	0.0	1.1	1	0	0	1	1	1	1	Aspartyl	protease
Asp_protease	PF09668.10	gi|408402933|ref|YP_006860916.1|	-	0.0031	17.3	0.0	0.0039	17.0	0.0	1.1	1	0	0	1	1	1	1	Aspartyl	protease
Alpha-amylase_N	PF02903.14	gi|408402933|ref|YP_006860916.1|	-	0.05	13.8	0.0	0.11	12.6	0.0	1.6	2	0	0	2	2	2	0	Alpha	amylase,	N-terminal	ig-like	domain
PAS_8	PF13188.7	gi|408402933|ref|YP_006860916.1|	-	0.071	13.2	0.0	0.16	12.0	0.0	1.6	1	0	0	1	1	1	0	PAS	domain
MetallophosC	PF16370.5	gi|408402934|ref|YP_006860917.1|	-	0.018	15.3	0.5	0.021	15.0	0.5	1.1	1	0	0	1	1	1	0	C	terminal	of	Calcineurin-like	phosphoesterase
DUF2129	PF09902.9	gi|408402934|ref|YP_006860917.1|	-	0.13	12.3	4.2	0.86	9.7	0.6	2.3	1	1	1	2	2	2	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2129)
ParD_like	PF11903.8	gi|408402935|ref|YP_006860918.1|	-	0.073	13.1	0.0	0.11	12.6	0.0	1.4	1	0	0	1	1	1	0	ParD-like	antitoxin	of	type	II	bacterial	toxin-antitoxin	system
RHH_5	PF07878.11	gi|408402935|ref|YP_006860918.1|	-	0.1	12.5	0.0	0.13	12.2	0.0	1.2	1	0	0	1	1	1	0	CopG-like	RHH_1	or	ribbon-helix-helix	domain,	RHH_5
HTH_24	PF13412.6	gi|408402936|ref|YP_006860919.1|	-	0.0002	20.9	0.1	0.00039	19.9	0.1	1.5	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HRDC	PF00570.23	gi|408402936|ref|YP_006860919.1|	-	0.02	14.9	0.1	0.15	12.1	0.0	2.3	2	0	0	2	2	2	0	HRDC	domain
HTH_5	PF01022.20	gi|408402936|ref|YP_006860919.1|	-	0.11	12.4	0.0	0.49	10.3	0.0	2.0	2	0	0	2	2	2	0	Bacterial	regulatory	protein,	arsR	family
PBP_sp32	PF07222.12	gi|408402937|ref|YP_006860920.1|	-	0.26	10.7	5.0	2.1	7.7	0.6	2.2	1	1	1	2	2	2	0	Proacrosin	binding	protein	sp32
zf-C2H2	PF00096.26	gi|408402937|ref|YP_006860920.1|	-	0.27	11.8	0.1	0.27	11.8	0.1	2.7	3	0	0	3	3	3	0	Zinc	finger,	C2H2	type
zf-C2H2_4	PF13894.6	gi|408402937|ref|YP_006860920.1|	-	0.72	10.9	0.1	0.72	10.9	0.1	2.7	3	0	0	3	3	3	0	C2H2-type	zinc	finger
OSTMP1	PF09777.9	gi|408402938|ref|YP_006860921.1|	-	0.17	11.3	0.3	0.25	10.7	0.3	1.3	1	1	0	1	1	1	0	Osteopetrosis-associated	transmembrane	protein	1	precursor
Prenyltrans	PF00432.21	gi|408402939|ref|YP_006860922.1|	-	0.11	12.3	0.0	0.24	11.2	0.0	1.6	1	0	0	1	1	1	0	Prenyltransferase	and	squalene	oxidase	repeat
Jas	PF16135.5	gi|408402940|ref|YP_006860923.1|	-	0.044	14.0	0.3	0.05	13.8	0.3	1.3	1	0	0	1	1	1	0	TPL-binding	domain	in	jasmonate	signalling
DDE_Tnp_1	PF01609.21	gi|408402943|ref|YP_006860926.1|	-	0.0002	21.1	0.0	0.00041	20.0	0.0	1.6	1	1	0	1	1	1	1	Transposase	DDE	domain
DUF1815	PF08844.10	gi|408402943|ref|YP_006860926.1|	-	0.17	11.9	0.2	0.87	9.6	0.1	2.0	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF1815)
LodA_C	PF18417.1	gi|408402944|ref|YP_006860927.1|	-	0.029	14.1	0.0	0.049	13.3	0.0	1.3	1	0	0	1	1	1	0	L-lysine	epsilon	oxidase	C-terminal	domain
DUF533	PF04391.12	gi|408402944|ref|YP_006860927.1|	-	0.037	13.6	0.4	0.051	13.1	0.4	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF533)
DUF1981	PF09324.10	gi|408402947|ref|YP_006860930.1|	-	0.054	13.3	0.1	0.51	10.2	0.1	2.2	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF1981)
DUF3729	PF12526.8	gi|408402947|ref|YP_006860930.1|	-	6.4	8.4	10.2	18	6.9	0.4	2.5	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3729)
DUF2672	PF10878.8	gi|408402948|ref|YP_006860931.1|	-	0.11	12.5	0.0	0.16	12.0	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2672)
Roc	PF08477.13	gi|408402949|ref|YP_006860932.1|	-	0.14	12.4	0.0	0.28	11.4	0.0	1.5	1	0	0	1	1	1	0	Ras	of	Complex,	Roc,	domain	of	DAPkinase
TniB	PF05621.11	gi|408402949|ref|YP_006860932.1|	-	0.15	11.4	0.0	6.6	6.1	0.0	2.1	2	0	0	2	2	2	0	Bacterial	TniB	protein
AAA_16	PF13191.6	gi|408402949|ref|YP_006860932.1|	-	0.18	12.2	0.0	0.99	9.8	0.0	1.9	1	1	0	1	1	1	0	AAA	ATPase	domain
zf-CCHC_2	PF13696.6	gi|408402950|ref|YP_006860933.1|	-	0.8	9.6	6.7	1.6	8.6	1.9	2.3	2	0	0	2	2	2	0	Zinc	knuckle
OppC_N	PF12911.7	gi|408402952|ref|YP_006860935.1|	-	0.082	12.9	1.0	0.11	12.5	1.0	1.2	1	0	0	1	1	1	0	N-terminal	TM	domain	of	oligopeptide	transport	permease	C
SLAC1	PF03595.17	gi|408402953|ref|YP_006860936.1|	-	0.035	13.4	0.0	0.036	13.3	0.0	1.0	1	0	0	1	1	1	0	Voltage-dependent	anion	channel
GATase	PF00117.28	gi|408402953|ref|YP_006860936.1|	-	0.19	11.5	0.0	0.19	11.5	0.0	1.0	1	0	0	1	1	1	0	Glutamine	amidotransferase	class-I
DUF1361	PF07099.11	gi|408402954|ref|YP_006860937.1|	-	0.11	12.4	0.1	5.1	7.0	0.0	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1361)
Vta1_C	PF18097.1	gi|408402959|ref|YP_006860942.1|	-	0.14	11.9	0.0	0.25	11.1	0.0	1.4	1	0	0	1	1	1	0	Vta1	C-terminal	domain
VbhA	PF18495.1	gi|408402959|ref|YP_006860942.1|	-	0.16	11.8	0.1	8	6.4	0.0	2.3	2	0	0	2	2	2	0	Antitoxin	VbhA
DUF4366	PF14283.6	gi|408402960|ref|YP_006860943.1|	-	0.022	14.8	0.4	0.035	14.2	0.4	1.4	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4366)
PRIMA1	PF16101.5	gi|408402960|ref|YP_006860943.1|	-	0.46	10.5	8.2	0.56	10.3	7.1	1.7	2	0	0	2	2	2	0	Proline-rich	membrane	anchor	1
Pex14_N	PF04695.13	gi|408402960|ref|YP_006860943.1|	-	2.9	8.5	11.0	4.5	7.9	11.0	1.3	1	0	0	1	1	1	0	Peroxisomal	membrane	anchor	protein	(Pex14p)	conserved	region
VAPB_antitox	PF02697.14	gi|408402962|ref|YP_006860945.1|	-	2.1e-07	31.6	0.4	3.6e-07	30.9	0.4	1.3	1	0	0	1	1	1	1	Putative	antitoxin
gag-asp_proteas	PF13975.6	gi|408402963|ref|YP_006860946.1|	-	2.6e-09	37.5	0.0	3.6e-09	37.1	0.0	1.1	1	0	0	1	1	1	1	gag-polyprotein	putative	aspartyl	protease
Asp_protease_2	PF13650.6	gi|408402963|ref|YP_006860946.1|	-	1.5e-08	35.1	0.0	2.2e-08	34.6	0.0	1.1	1	0	0	1	1	1	1	Aspartyl	protease
Asp_protease	PF09668.10	gi|408402963|ref|YP_006860946.1|	-	0.0031	17.3	0.0	0.0039	17.0	0.0	1.1	1	0	0	1	1	1	1	Aspartyl	protease
Alpha-amylase_N	PF02903.14	gi|408402963|ref|YP_006860946.1|	-	0.05	13.8	0.0	0.11	12.6	0.0	1.6	2	0	0	2	2	2	0	Alpha	amylase,	N-terminal	ig-like	domain
PAS_8	PF13188.7	gi|408402963|ref|YP_006860946.1|	-	0.071	13.2	0.0	0.16	12.0	0.0	1.6	1	0	0	1	1	1	0	PAS	domain
MetallophosC	PF16370.5	gi|408402964|ref|YP_006860947.1|	-	0.018	15.3	0.5	0.021	15.0	0.5	1.1	1	0	0	1	1	1	0	C	terminal	of	Calcineurin-like	phosphoesterase
DUF2129	PF09902.9	gi|408402964|ref|YP_006860947.1|	-	0.13	12.3	4.2	0.86	9.7	0.6	2.3	1	1	1	2	2	2	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2129)
ParD_like	PF11903.8	gi|408402965|ref|YP_006860948.1|	-	0.073	13.1	0.0	0.11	12.6	0.0	1.4	1	0	0	1	1	1	0	ParD-like	antitoxin	of	type	II	bacterial	toxin-antitoxin	system
RHH_5	PF07878.11	gi|408402965|ref|YP_006860948.1|	-	0.1	12.5	0.0	0.13	12.2	0.0	1.2	1	0	0	1	1	1	0	CopG-like	RHH_1	or	ribbon-helix-helix	domain,	RHH_5
HTH_24	PF13412.6	gi|408402966|ref|YP_006860949.1|	-	0.0002	20.9	0.1	0.00039	19.9	0.1	1.5	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HRDC	PF00570.23	gi|408402966|ref|YP_006860949.1|	-	0.02	14.9	0.1	0.15	12.1	0.0	2.3	2	0	0	2	2	2	0	HRDC	domain
HTH_5	PF01022.20	gi|408402966|ref|YP_006860949.1|	-	0.11	12.4	0.0	0.49	10.3	0.0	2.0	2	0	0	2	2	2	0	Bacterial	regulatory	protein,	arsR	family
PBP_sp32	PF07222.12	gi|408402967|ref|YP_006860950.1|	-	0.26	10.7	5.0	2.1	7.7	0.6	2.2	1	1	1	2	2	2	0	Proacrosin	binding	protein	sp32
zf-C2H2	PF00096.26	gi|408402967|ref|YP_006860950.1|	-	0.27	11.8	0.1	0.27	11.8	0.1	2.7	3	0	0	3	3	3	0	Zinc	finger,	C2H2	type
zf-C2H2_4	PF13894.6	gi|408402967|ref|YP_006860950.1|	-	0.72	10.9	0.1	0.72	10.9	0.1	2.7	3	0	0	3	3	3	0	C2H2-type	zinc	finger
OSTMP1	PF09777.9	gi|408402968|ref|YP_006860951.1|	-	0.17	11.3	0.3	0.25	10.7	0.3	1.3	1	1	0	1	1	1	0	Osteopetrosis-associated	transmembrane	protein	1	precursor
Prenyltrans	PF00432.21	gi|408402969|ref|YP_006860952.1|	-	0.11	12.3	0.0	0.24	11.2	0.0	1.6	1	0	0	1	1	1	0	Prenyltransferase	and	squalene	oxidase	repeat
Jas	PF16135.5	gi|408402970|ref|YP_006860953.1|	-	0.044	14.0	0.3	0.05	13.8	0.3	1.3	1	0	0	1	1	1	0	TPL-binding	domain	in	jasmonate	signalling
DZR	PF12773.7	gi|408402973|ref|YP_006860956.1|	-	0.021	14.8	4.2	0.027	14.5	4.2	1.2	1	0	0	1	1	1	0	Double	zinc	ribbon
LodA_C	PF18417.1	gi|408402974|ref|YP_006860957.1|	-	0.029	14.1	0.0	0.049	13.3	0.0	1.3	1	0	0	1	1	1	0	L-lysine	epsilon	oxidase	C-terminal	domain
DUF533	PF04391.12	gi|408402974|ref|YP_006860957.1|	-	0.037	13.6	0.4	0.051	13.1	0.4	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF533)
DUF1981	PF09324.10	gi|408402976|ref|YP_006860959.1|	-	0.054	13.3	0.1	0.51	10.2	0.1	2.2	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF1981)
DUF3729	PF12526.8	gi|408402976|ref|YP_006860959.1|	-	6.4	8.4	10.2	18	6.9	0.4	2.5	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3729)
DUF2672	PF10878.8	gi|408402977|ref|YP_006860960.1|	-	0.11	12.5	0.0	0.16	12.0	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2672)
Roc	PF08477.13	gi|408402978|ref|YP_006860961.1|	-	0.14	12.4	0.0	0.28	11.4	0.0	1.5	1	0	0	1	1	1	0	Ras	of	Complex,	Roc,	domain	of	DAPkinase
TniB	PF05621.11	gi|408402978|ref|YP_006860961.1|	-	0.15	11.4	0.0	6.6	6.1	0.0	2.1	2	0	0	2	2	2	0	Bacterial	TniB	protein
AAA_16	PF13191.6	gi|408402978|ref|YP_006860961.1|	-	0.18	12.2	0.0	0.99	9.8	0.0	1.9	1	1	0	1	1	1	0	AAA	ATPase	domain
zf-CCHC_2	PF13696.6	gi|408402979|ref|YP_006860962.1|	-	0.8	9.6	6.7	1.6	8.6	1.9	2.3	2	0	0	2	2	2	0	Zinc	knuckle
OppC_N	PF12911.7	gi|408402981|ref|YP_006860964.1|	-	0.082	12.9	1.0	0.11	12.5	1.0	1.2	1	0	0	1	1	1	0	N-terminal	TM	domain	of	oligopeptide	transport	permease	C
SLAC1	PF03595.17	gi|408402982|ref|YP_006860965.1|	-	0.035	13.4	0.0	0.036	13.3	0.0	1.0	1	0	0	1	1	1	0	Voltage-dependent	anion	channel
GATase	PF00117.28	gi|408402982|ref|YP_006860965.1|	-	0.19	11.5	0.0	0.19	11.5	0.0	1.0	1	0	0	1	1	1	0	Glutamine	amidotransferase	class-I
DUF1361	PF07099.11	gi|408402983|ref|YP_006860966.1|	-	0.11	12.4	0.1	5.1	7.0	0.0	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1361)
MtrF	PF09472.10	gi|408402984|ref|YP_006860967.1|	-	1.4	8.3	4.5	0.38	10.2	0.3	1.9	2	0	0	2	2	2	0	Tetrahydromethanopterin	S-methyltransferase,	F	subunit	(MtrF)
SPW	PF03779.14	gi|408402984|ref|YP_006860967.1|	-	3.1	7.4	10.3	0.1	12.2	4.1	1.7	2	0	0	2	2	2	0	SPW	repeat
zf-CCCH_6	PF18585.1	gi|408402985|ref|YP_006860968.1|	-	0.083	12.8	0.5	0.11	12.4	0.5	1.3	1	1	0	1	1	1	0	Chromatin	remodeling	factor	Mit1	C-terminal	Zn	finger	2
Vta1_C	PF18097.1	gi|408402990|ref|YP_006860973.1|	-	0.14	11.9	0.0	0.22	11.3	0.0	1.4	1	0	0	1	1	1	0	Vta1	C-terminal	domain
DUF4366	PF14283.6	gi|408402991|ref|YP_006860974.1|	-	0.084	12.9	6.1	4.9	7.2	6.3	2.4	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4366)
DUF1299	PF06975.11	gi|408402991|ref|YP_006860974.1|	-	0.15	12.2	3.2	12	6.1	0.2	2.5	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1299)
SOG2	PF10428.9	gi|408402991|ref|YP_006860974.1|	-	0.18	11.0	19.4	0.22	10.7	19.4	1.0	1	0	0	1	1	1	0	RAM	signalling	pathway	protein
ANTAR	PF03861.14	gi|408402992|ref|YP_006860975.1|	-	0.042	13.7	0.1	0.34	10.8	0.0	1.9	1	1	1	2	2	2	0	ANTAR	domain
Malic_M	PF03949.15	gi|408402993|ref|YP_006860976.1|	-	2.4e-27	95.8	1.0	1.9e-26	92.9	1.0	2.4	1	1	0	1	1	1	1	Malic	enzyme,	NAD	binding	domain
malic	PF00390.19	gi|408402993|ref|YP_006860976.1|	-	4.8e-27	94.9	0.1	2e-24	86.4	0.1	2.4	1	1	0	1	1	1	1	Malic	enzyme,	N-terminal	domain
Shikimate_DH	PF01488.20	gi|408402993|ref|YP_006860976.1|	-	0.003	17.6	0.0	0.007	16.4	0.0	1.6	1	0	0	1	1	1	1	Shikimate	/	quinate	5-dehydrogenase
AdoHcyase_NAD	PF00670.21	gi|408402993|ref|YP_006860976.1|	-	0.0041	17.2	0.1	0.032	14.3	0.1	2.3	1	1	0	1	1	1	1	S-adenosyl-L-homocysteine	hydrolase,	NAD	binding	domain
ThiF	PF00899.21	gi|408402993|ref|YP_006860976.1|	-	0.0064	15.9	0.1	0.016	14.6	0.1	1.8	1	0	0	1	1	1	1	ThiF	family
XdhC_C	PF13478.6	gi|408402993|ref|YP_006860976.1|	-	0.025	15.1	0.1	0.058	13.9	0.1	1.7	1	0	0	1	1	1	0	XdhC	Rossmann	domain
BRCA-2_helical	PF09169.10	gi|408402993|ref|YP_006860976.1|	-	0.031	13.9	0.1	0.056	13.1	0.1	1.4	1	0	0	1	1	1	0	BRCA2,	helical
THF_DHG_CYH_C	PF02882.19	gi|408402993|ref|YP_006860976.1|	-	0.044	13.1	1.7	0.73	9.1	0.1	3.0	3	0	0	3	3	3	0	Tetrahydrofolate	dehydrogenase/cyclohydrolase,	NAD(P)-binding	domain
ELFV_dehydrog	PF00208.21	gi|408402993|ref|YP_006860976.1|	-	0.067	12.9	0.0	0.12	12.1	0.0	1.4	1	0	0	1	1	1	0	Glutamate/Leucine/Phenylalanine/Valine	dehydrogenase
Citrate_synt	PF00285.21	gi|408402994|ref|YP_006860977.1|	-	1.5e-128	428.9	0.1	1.7e-128	428.7	0.1	1.0	1	0	0	1	1	1	1	Citrate	synthase,	C-terminal	domain
AIRS_C	PF02769.22	gi|408402995|ref|YP_006860978.1|	-	4e-22	79.0	0.0	9.6e-22	77.8	0.0	1.7	2	0	0	2	2	2	1	AIR	synthase	related	protein,	C-terminal	domain
AIRS	PF00586.24	gi|408402995|ref|YP_006860978.1|	-	1.1e-15	58.1	1.2	1.9e-15	57.3	1.2	1.5	1	0	0	1	1	1	1	AIR	synthase	related	protein,	N-terminal	domain
Radical_SAM_C	PF16199.5	gi|408402996|ref|YP_006860979.1|	-	5.1e-24	84.1	0.1	9.8e-24	83.2	0.1	1.5	1	0	0	1	1	1	1	Radical_SAM	C-terminal	domain
Radical_SAM	PF04055.21	gi|408402996|ref|YP_006860979.1|	-	1e-23	84.5	0.0	2.4e-23	83.4	0.0	1.6	1	0	0	1	1	1	1	Radical	SAM	superfamily
Acetyltransf_1	PF00583.25	gi|408402996|ref|YP_006860979.1|	-	4.1e-10	39.9	0.2	1e-09	38.6	0.2	1.7	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_10	PF13673.7	gi|408402996|ref|YP_006860979.1|	-	0.00015	21.7	0.2	0.00053	19.9	0.2	2.0	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_7	PF13508.7	gi|408402996|ref|YP_006860979.1|	-	0.021	15.2	0.2	0.049	14.1	0.2	1.7	1	0	0	1	1	1	0	Acetyltransferase	(GNAT)	domain
tRNA-synt_1f	PF01921.18	gi|408402997|ref|YP_006860980.1|	-	3e-103	345.5	0.0	3.9e-103	345.1	0.0	1.1	1	0	0	1	1	1	1	tRNA	synthetases	class	I	(K)
Zn_ribbon_recom	PF13408.6	gi|408402997|ref|YP_006860980.1|	-	0.05	14.1	1.4	0.11	13.1	1.4	1.5	1	0	0	1	1	1	0	Recombinase	zinc	beta	ribbon	domain
tRNA-synt_1	PF00133.22	gi|408402997|ref|YP_006860980.1|	-	0.11	10.7	0.0	0.18	10.0	0.0	1.2	1	0	0	1	1	1	0	tRNA	synthetases	class	I	(I,	L,	M	and	V)
Csa1	PF06023.12	gi|408402999|ref|YP_006860982.1|	-	4.3e-70	236.4	0.0	3.1e-69	233.5	0.0	1.8	1	1	0	1	1	1	1	CRISPR-associated	exonuclease	Csa1
Cas_Cas1	PF01867.16	gi|408403000|ref|YP_006860983.1|	-	7.8e-74	248.3	0.0	1e-73	248.0	0.0	1.0	1	0	0	1	1	1	1	CRISPR	associated	protein	Cas1
IFT20	PF14931.6	gi|408403000|ref|YP_006860983.1|	-	0.06	13.5	2.5	1.7	8.9	0.1	2.4	2	0	0	2	2	2	0	Intraflagellar	transport	complex	B,	subunit	20
CRISPR_Cas2	PF09827.9	gi|408403001|ref|YP_006860984.1|	-	2.5e-18	66.0	0.2	3.6e-18	65.5	0.2	1.2	1	0	0	1	1	1	1	CRISPR	associated	protein	Cas2
Cas_Cas4	PF01930.17	gi|408403002|ref|YP_006860985.1|	-	9e-19	68.2	3.0	1.4e-18	67.5	3.0	1.3	1	1	0	1	1	1	1	Domain	of	unknown	function	DUF83
PDDEXK_1	PF12705.7	gi|408403002|ref|YP_006860985.1|	-	2.2e-11	44.1	0.9	4.4e-11	43.2	0.5	1.5	1	1	1	2	2	2	1	PD-(D/E)XK	nuclease	superfamily
UPF0236	PF06782.11	gi|408403002|ref|YP_006860985.1|	-	0.0033	16.1	0.4	0.0043	15.8	0.4	1.1	1	0	0	1	1	1	1	Uncharacterised	protein	family	(UPF0236)
Csa1	PF06023.12	gi|408403002|ref|YP_006860985.1|	-	0.0035	16.7	0.5	0.03	13.7	0.0	2.0	1	1	1	2	2	2	1	CRISPR-associated	exonuclease	Csa1
UPF0175	PF03683.13	gi|408403004|ref|YP_006860987.1|	-	9.4e-08	31.7	0.0	1.4e-07	31.1	0.0	1.4	1	0	0	1	1	1	1	Uncharacterised	protein	family	(UPF0175)
CopG_antitoxin	PF12441.8	gi|408403004|ref|YP_006860987.1|	-	0.02	15.4	0.1	0.048	14.2	0.0	1.6	2	0	0	2	2	2	0	CopG	antitoxin	of	type	II	toxin-antitoxin	system
RHH_1	PF01402.21	gi|408403004|ref|YP_006860987.1|	-	0.05	13.6	0.2	0.39	10.7	0.0	2.3	2	0	0	2	2	2	0	Ribbon-helix-helix	protein,	copG	family
Pox_TAA1	PF03295.14	gi|408403004|ref|YP_006860987.1|	-	0.057	13.3	0.0	2	8.4	0.0	2.2	2	0	0	2	2	2	0	Poxvirus	trans-activator	protein	A1	C-terminal
Cadherin_3	PF16184.5	gi|408403005|ref|YP_006860988.1|	-	0.071	13.1	0.2	0.23	11.5	0.0	1.9	2	0	0	2	2	2	0	Cadherin-like
DEAD	PF00270.29	gi|408403006|ref|YP_006860989.1|	-	1.2e-09	38.2	0.0	1.7e-06	27.9	0.0	2.4	2	0	0	2	2	2	2	DEAD/DEAH	box	helicase
Helicase_C	PF00271.31	gi|408403006|ref|YP_006860989.1|	-	5.9e-07	29.8	0.0	1.8e-06	28.2	0.0	1.9	1	0	0	1	1	1	1	Helicase	conserved	C-terminal	domain
ResIII	PF04851.15	gi|408403006|ref|YP_006860989.1|	-	0.00049	20.1	0.0	0.0013	18.7	0.0	1.8	1	0	0	1	1	1	1	Type	III	restriction	enzyme,	res	subunit
DUF677	PF05055.12	gi|408403006|ref|YP_006860989.1|	-	0.83	8.5	3.8	2.5	6.9	0.1	3.1	3	1	0	3	3	3	0	Protein	of	unknown	function	(DUF677)
Cas_Cas5d	PF09704.10	gi|408403007|ref|YP_006860990.1|	-	0.00083	19.3	0.0	0.0011	18.9	0.0	1.2	1	0	0	1	1	1	1	CRISPR-associated	protein	(Cas_Cas5)
DevR	PF01905.16	gi|408403008|ref|YP_006860991.1|	-	4.4e-14	52.2	0.0	1.2e-11	44.3	0.0	2.1	1	1	0	1	1	1	1	CRISPR-associated	negative	auto-regulator	DevR/Csa2
CRISPR_Cas6	PF10040.9	gi|408403010|ref|YP_006860993.1|	-	4.2e-18	65.8	0.0	1.1e-17	64.4	0.0	1.7	2	0	0	2	2	2	1	CRISPR-associated	endoribonuclease	Cas6
DUF1769	PF08588.10	gi|408403010|ref|YP_006860993.1|	-	0.044	14.0	0.0	0.12	12.6	0.0	1.7	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1769)
Syntaxin_2	PF14523.6	gi|408403011|ref|YP_006860994.1|	-	0.0018	18.6	1.8	0.0022	18.3	1.8	1.2	1	0	0	1	1	1	1	Syntaxin-like	protein
HMG_box	PF00505.19	gi|408403011|ref|YP_006860994.1|	-	0.0022	18.4	0.2	0.0029	18.0	0.2	1.2	1	0	0	1	1	1	1	HMG	(high	mobility	group)	box
BAR_3_WASP_bdg	PF10456.9	gi|408403011|ref|YP_006860994.1|	-	0.038	13.4	1.3	0.041	13.3	1.3	1.0	1	0	0	1	1	1	0	WASP-binding	domain	of	Sorting	nexin	protein
Sigma70_r4_2	PF08281.12	gi|408403012|ref|YP_006860995.1|	-	2.5e-05	23.8	0.0	7.6e-05	22.3	0.0	1.8	2	0	0	2	2	2	1	Sigma-70,	region	4
HTH_38	PF13936.6	gi|408403012|ref|YP_006860995.1|	-	0.0012	18.6	0.0	0.005	16.6	0.0	2.2	1	1	0	1	1	1	1	Helix-turn-helix	domain
HTH_11	PF08279.12	gi|408403012|ref|YP_006860995.1|	-	0.0042	17.0	0.5	0.061	13.3	0.0	2.7	2	1	1	3	3	3	1	HTH	domain
HTH_DeoR	PF08220.12	gi|408403012|ref|YP_006860995.1|	-	0.0058	16.4	1.3	0.88	9.4	0.0	3.0	3	0	0	3	3	3	1	DeoR-like	helix-turn-helix	domain
HTH_40	PF14493.6	gi|408403012|ref|YP_006860995.1|	-	0.013	16.0	0.1	0.075	13.5	0.1	2.5	1	1	0	1	1	1	0	Helix-turn-helix	domain
UPF0122	PF04297.14	gi|408403012|ref|YP_006860995.1|	-	0.023	14.9	0.4	1.7	9.0	0.0	2.5	1	1	0	2	2	2	0	Putative	helix-turn-helix	protein,	YlxM	/	p13	like
DUF4349	PF14257.6	gi|408403012|ref|YP_006860995.1|	-	0.029	13.8	1.7	0.045	13.2	1.7	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4349)
HTH_Tnp_ISL3	PF13542.6	gi|408403012|ref|YP_006860995.1|	-	0.036	13.5	0.0	0.09	12.2	0.0	1.7	1	0	0	1	1	1	0	Helix-turn-helix	domain	of	transposase	family	ISL3
MMS19_C	PF12460.8	gi|408403012|ref|YP_006860995.1|	-	0.048	12.8	0.1	0.053	12.6	0.1	1.1	1	0	0	1	1	1	0	RNAPII	transcription	regulator	C-terminal
HTH_23	PF13384.6	gi|408403012|ref|YP_006860995.1|	-	0.088	12.6	1.4	0.21	11.5	0.0	2.3	3	0	0	3	3	3	0	Homeodomain-like	domain
Phage-MuB_C	PF09077.11	gi|408403013|ref|YP_006860996.1|	-	0.001	18.9	0.1	0.0017	18.2	0.1	1.4	1	0	0	1	1	1	1	Mu	B	transposition	protein,	C	terminal
AAA_assoc_2	PF16193.5	gi|408403013|ref|YP_006860996.1|	-	0.0026	18.1	0.1	0.0054	17.0	0.1	1.6	1	0	0	1	1	1	1	AAA	C-terminal	domain
AAA	PF00004.29	gi|408403013|ref|YP_006860996.1|	-	0.072	13.5	0.1	0.18	12.2	0.0	1.6	2	0	0	2	2	2	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
DDE_Tnp_1	PF01609.21	gi|408403014|ref|YP_006860997.1|	-	0.0002	21.1	0.0	0.00041	20.0	0.0	1.6	1	1	0	1	1	1	1	Transposase	DDE	domain
DUF1815	PF08844.10	gi|408403014|ref|YP_006860997.1|	-	0.17	11.9	0.2	0.87	9.6	0.1	2.0	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF1815)
NB-ARC	PF00931.22	gi|408403015|ref|YP_006860998.1|	-	6e-05	22.3	0.1	6e-05	22.3	0.1	1.3	1	1	0	1	1	1	1	NB-ARC	domain
AAA_22	PF13401.6	gi|408403015|ref|YP_006860998.1|	-	9.1e-05	22.7	0.0	0.00012	22.4	0.0	1.1	1	0	0	1	1	1	1	AAA	domain
AAA_16	PF13191.6	gi|408403015|ref|YP_006860998.1|	-	0.0045	17.4	0.0	0.0045	17.4	0.0	1.2	1	0	0	1	1	1	1	AAA	ATPase	domain
ABC_tran	PF00005.27	gi|408403015|ref|YP_006860998.1|	-	0.005	17.4	0.0	0.0069	16.9	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
ATPase_2	PF01637.18	gi|408403015|ref|YP_006860998.1|	-	0.0055	16.6	0.0	0.0055	16.6	0.0	1.1	1	0	0	1	1	1	1	ATPase	domain	predominantly	from	Archaea
AAA	PF00004.29	gi|408403015|ref|YP_006860998.1|	-	0.0097	16.3	0.0	0.011	16.2	0.0	1.2	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_29	PF13555.6	gi|408403015|ref|YP_006860998.1|	-	0.012	15.3	0.0	0.017	14.8	0.0	1.3	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
NTPase_1	PF03266.15	gi|408403015|ref|YP_006860998.1|	-	0.016	15.1	0.0	0.026	14.5	0.0	1.3	1	1	0	1	1	1	0	NTPase
AAA_33	PF13671.6	gi|408403015|ref|YP_006860998.1|	-	0.027	14.6	0.0	0.029	14.5	0.0	1.1	1	0	0	1	1	1	0	AAA	domain
AAA_23	PF13476.6	gi|408403015|ref|YP_006860998.1|	-	0.028	14.9	0.0	0.028	14.9	0.0	1.2	1	0	0	1	1	1	0	AAA	domain
RNA_helicase	PF00910.22	gi|408403015|ref|YP_006860998.1|	-	0.028	14.8	0.0	0.038	14.4	0.0	1.3	1	0	0	1	1	1	0	RNA	helicase
DUF815	PF05673.13	gi|408403015|ref|YP_006860998.1|	-	0.065	12.4	0.0	0.065	12.4	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF815)
DUF87	PF01935.17	gi|408403015|ref|YP_006860998.1|	-	0.08	13.0	0.0	0.12	12.5	0.0	1.3	1	0	0	1	1	1	0	Helicase	HerA,	central	domain
AAA_7	PF12775.7	gi|408403015|ref|YP_006860998.1|	-	0.089	12.3	0.0	0.12	11.9	0.0	1.2	1	0	0	1	1	1	0	P-loop	containing	dynein	motor	region
ATP_bind_1	PF03029.17	gi|408403015|ref|YP_006860998.1|	-	0.16	11.8	0.1	0.2	11.4	0.1	1.1	1	0	0	1	1	1	0	Conserved	hypothetical	ATP	binding	protein
AAA_18	PF13238.6	gi|408403015|ref|YP_006860998.1|	-	0.18	12.3	0.1	0.24	12.0	0.1	1.3	1	1	0	1	1	1	0	AAA	domain
DDE_Tnp_IS240	PF13610.6	gi|408403016|ref|YP_006860999.1|	-	2.7e-10	40.6	0.0	5.6e-10	39.6	0.0	1.5	1	0	0	1	1	1	1	DDE	domain
AraC_binding	PF02311.19	gi|408403017|ref|YP_006861000.1|	-	0.055	13.4	0.0	0.08	12.9	0.0	1.3	1	0	0	1	1	1	0	AraC-like	ligand	binding	domain
HAD_2	PF13419.6	gi|408403018|ref|YP_006861001.1|	-	1.1e-26	94.0	0.0	1.3e-26	93.7	0.0	1.1	1	0	0	1	1	1	1	Haloacid	dehalogenase-like	hydrolase
Hydrolase	PF00702.26	gi|408403018|ref|YP_006861001.1|	-	2.5e-13	50.8	0.5	4.6e-12	46.7	0.5	2.0	1	1	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
HAD	PF12710.7	gi|408403018|ref|YP_006861001.1|	-	0.00078	19.9	0.0	0.00096	19.6	0.0	1.2	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Hydrolase_6	PF13344.6	gi|408403018|ref|YP_006861001.1|	-	0.067	13.3	0.0	0.86	9.7	0.0	2.6	1	1	0	1	1	1	0	Haloacid	dehalogenase-like	hydrolase
NT5C	PF06941.12	gi|408403018|ref|YP_006861001.1|	-	0.071	13.0	0.0	0.19	11.6	0.0	1.8	1	1	0	1	1	1	0	5'	nucleotidase,	deoxy	(Pyrimidine),	cytosolic	type	C	protein	(NT5C)
DHHA1	PF02272.19	gi|408403019|ref|YP_006861002.1|	-	2.3e-05	24.8	0.1	4e-05	24.0	0.1	1.3	1	0	0	1	1	1	1	DHHA1	domain
DHH	PF01368.20	gi|408403019|ref|YP_006861002.1|	-	0.0023	18.1	0.0	0.0044	17.2	0.0	1.4	1	0	0	1	1	1	1	DHH	family
Bacillus_HBL	PF05791.11	gi|408403019|ref|YP_006861002.1|	-	0.055	13.3	0.1	0.1	12.4	0.1	1.4	1	0	0	1	1	1	0	Bacillus	haemolytic	enterotoxin	(HBL)
adh_short_C2	PF13561.6	gi|408403020|ref|YP_006861003.1|	-	3.1e-67	226.6	0.0	3.5e-67	226.4	0.0	1.0	1	0	0	1	1	1	1	Enoyl-(Acyl	carrier	protein)	reductase
adh_short	PF00106.25	gi|408403020|ref|YP_006861003.1|	-	5.5e-58	195.6	0.4	6.4e-58	195.4	0.4	1.0	1	0	0	1	1	1	1	short	chain	dehydrogenase
KR	PF08659.10	gi|408403020|ref|YP_006861003.1|	-	4e-11	43.2	0.1	5.8e-11	42.6	0.1	1.2	1	0	0	1	1	1	1	KR	domain
Polysacc_synt_2	PF02719.15	gi|408403020|ref|YP_006861003.1|	-	1.2e-08	34.5	0.5	1.5e-08	34.1	0.5	1.1	1	0	0	1	1	1	1	Polysaccharide	biosynthesis	protein
Epimerase	PF01370.21	gi|408403020|ref|YP_006861003.1|	-	9.1e-08	31.8	0.0	1.6e-07	31.1	0.0	1.5	1	1	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
NAD_binding_10	PF13460.6	gi|408403020|ref|YP_006861003.1|	-	2.4e-05	24.3	0.1	3.4e-05	23.8	0.1	1.2	1	0	0	1	1	1	1	NAD(P)H-binding
Shikimate_DH	PF01488.20	gi|408403020|ref|YP_006861003.1|	-	0.0002	21.4	0.6	0.0002	21.4	0.6	1.7	2	0	0	2	2	2	1	Shikimate	/	quinate	5-dehydrogenase
Sacchrp_dh_NADP	PF03435.18	gi|408403020|ref|YP_006861003.1|	-	0.00048	20.4	0.4	0.00084	19.6	0.4	1.4	1	0	0	1	1	1	1	Saccharopine	dehydrogenase	NADP	binding	domain
GDP_Man_Dehyd	PF16363.5	gi|408403020|ref|YP_006861003.1|	-	0.00078	18.9	0.4	0.017	14.5	0.4	2.3	1	1	0	1	1	1	1	GDP-mannose	4,6	dehydratase
ApbA	PF02558.16	gi|408403020|ref|YP_006861003.1|	-	0.00089	18.9	0.1	0.0013	18.4	0.1	1.3	1	0	0	1	1	1	1	Ketopantoate	reductase	PanE/ApbA
3HCDH_N	PF02737.18	gi|408403020|ref|YP_006861003.1|	-	0.0011	18.9	0.3	0.0015	18.5	0.3	1.2	1	0	0	1	1	1	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
RmlD_sub_bind	PF04321.17	gi|408403020|ref|YP_006861003.1|	-	0.0063	15.6	0.2	0.017	14.3	0.1	1.7	2	0	0	2	2	2	1	RmlD	substrate	binding	domain
3Beta_HSD	PF01073.19	gi|408403020|ref|YP_006861003.1|	-	0.015	14.3	0.3	0.02	13.9	0.3	1.3	1	0	0	1	1	1	0	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
F420_oxidored	PF03807.17	gi|408403020|ref|YP_006861003.1|	-	0.035	14.7	0.5	0.035	14.7	0.5	1.7	2	0	0	2	2	1	0	NADP	oxidoreductase	coenzyme	F420-dependent
DUF4869	PF16163.5	gi|408403020|ref|YP_006861003.1|	-	0.052	13.2	0.1	0.1	12.3	0.1	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4869)
NAD_Gly3P_dh_N	PF01210.23	gi|408403020|ref|YP_006861003.1|	-	0.088	12.8	0.0	0.12	12.4	0.0	1.2	1	0	0	1	1	1	0	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
NmrA	PF05368.13	gi|408403020|ref|YP_006861003.1|	-	0.11	12.1	0.3	0.36	10.3	0.2	1.7	2	0	0	2	2	2	0	NmrA-like	family
DUF1776	PF08643.10	gi|408403020|ref|YP_006861003.1|	-	0.11	11.8	0.0	0.2	11.0	0.0	1.3	1	1	0	1	1	1	0	Fungal	family	of	unknown	function	(DUF1776)
AdoHcyase_NAD	PF00670.21	gi|408403020|ref|YP_006861003.1|	-	0.12	12.4	2.9	0.22	11.6	2.9	1.4	1	1	0	1	1	1	0	S-adenosyl-L-homocysteine	hydrolase,	NAD	binding	domain
2-Hacid_dh_C	PF02826.19	gi|408403020|ref|YP_006861003.1|	-	0.12	11.7	0.3	0.17	11.2	0.3	1.3	1	0	0	1	1	1	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
DUF3357	PF11837.8	gi|408403021|ref|YP_006861004.1|	-	0.025	15.0	0.2	0.048	14.1	0.2	1.5	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF3357)
ZirS_C	PF16583.5	gi|408403021|ref|YP_006861004.1|	-	0.17	11.5	2.7	0.18	11.4	0.4	2.0	2	0	0	2	2	2	0	Zinc-regulated	secreted	antivirulence	protein	C-terminal	domain
DUF2795	PF11387.8	gi|408403022|ref|YP_006861005.1|	-	4.3e-07	30.0	0.0	1.3e-06	28.5	0.0	1.9	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF2795)
zf-C2H2	PF00096.26	gi|408403022|ref|YP_006861005.1|	-	0.00024	21.4	1.1	0.0031	17.9	0.3	2.4	2	0	0	2	2	2	1	Zinc	finger,	C2H2	type
zf-C2H2_6	PF13912.6	gi|408403022|ref|YP_006861005.1|	-	0.0027	17.7	0.2	0.0066	16.4	0.2	1.7	1	0	0	1	1	1	1	C2H2-type	zinc	finger
zf-C2H2_3rep	PF18868.1	gi|408403022|ref|YP_006861005.1|	-	0.0033	18.1	0.2	0.0054	17.4	0.2	1.4	1	0	0	1	1	1	1	Zinc	finger	C2H2-type,	3	repeats
zf-C2H2_4	PF13894.6	gi|408403022|ref|YP_006861005.1|	-	0.0085	16.9	0.8	0.019	15.7	0.2	1.9	2	0	0	2	2	2	1	C2H2-type	zinc	finger
zf_UBZ	PF18439.1	gi|408403022|ref|YP_006861005.1|	-	0.016	14.8	0.1	0.032	13.8	0.1	1.6	1	0	0	1	1	1	0	Ubiquitin-Binding	Zinc	Finger
zf-MYST	PF17772.1	gi|408403022|ref|YP_006861005.1|	-	0.097	12.3	0.0	0.17	11.5	0.0	1.4	1	0	0	1	1	1	0	MYST	family	zinc	finger	domain
zf-C2H2_jaz	PF12171.8	gi|408403022|ref|YP_006861005.1|	-	0.13	12.6	0.5	0.26	11.6	0.5	1.6	1	0	0	1	1	1	0	Zinc-finger	double-stranded	RNA-binding
HNH_5	PF14279.6	gi|408403022|ref|YP_006861005.1|	-	0.15	12.0	0.2	0.27	11.1	0.2	1.4	1	0	0	1	1	1	0	HNH	endonuclease
zf-met	PF12874.7	gi|408403022|ref|YP_006861005.1|	-	0.17	12.3	0.1	0.31	11.5	0.1	1.5	1	0	0	1	1	1	0	Zinc-finger	of	C2H2	type
P-II	PF00543.22	gi|408403023|ref|YP_006861006.1|	-	2.1e-19	70.0	0.1	2.4e-19	69.8	0.1	1.0	1	0	0	1	1	1	1	Nitrogen	regulatory	protein	P-II
tify	PF06200.14	gi|408403023|ref|YP_006861006.1|	-	0.11	11.9	0.4	2.2	7.7	0.1	2.3	2	0	0	2	2	2	0	tify	domain
CBS	PF00571.28	gi|408403024|ref|YP_006861007.1|	-	7.4e-25	87.2	2.7	2.5e-11	43.9	0.5	2.3	2	0	0	2	2	2	2	CBS	domain
IF3_N	PF05198.16	gi|408403024|ref|YP_006861007.1|	-	0.064	13.5	1.9	4.1	7.8	0.1	2.7	2	1	1	3	3	3	0	Translation	initiation	factor	IF-3,	N-terminal	domain
DUF2795	PF11387.8	gi|408403025|ref|YP_006861008.1|	-	4.4e-14	52.4	0.2	4.4e-14	52.4	0.2	1.7	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF2795)
DUF1533	PF07550.11	gi|408403029|ref|YP_006861012.1|	-	0.0012	18.7	0.6	0.0079	16.1	0.2	2.3	2	1	0	2	2	2	1	Protein	of	unknown	function	(DUF1533)
Filamin	PF00630.19	gi|408403029|ref|YP_006861012.1|	-	0.0012	19.6	0.6	0.012	16.4	0.1	2.5	1	1	1	2	2	2	1	Filamin/ABP280	repeat
MG2	PF01835.19	gi|408403029|ref|YP_006861012.1|	-	0.012	16.1	0.1	0.098	13.1	0.1	2.4	2	1	0	2	2	2	0	MG2	domain
DUF326	PF03860.16	gi|408403030|ref|YP_006861013.1|	-	2.9e-15	55.6	62.9	2.2e-06	27.4	13.9	4.4	4	0	0	4	4	4	4	Domain	of	Unknown	Function	(DUF326)
MFS_1	PF07690.16	gi|408403031|ref|YP_006861014.1|	-	7e-15	54.8	16.9	4.8e-14	52.0	12.3	2.0	2	0	0	2	2	2	2	Major	Facilitator	Superfamily
DUF2207	PF09972.9	gi|408403033|ref|YP_006861016.1|	-	0.2	10.4	0.4	0.23	10.2	0.4	1.0	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2207)
HTH_24	PF13412.6	gi|408403034|ref|YP_006861017.1|	-	4.1e-11	42.2	0.4	9.4e-07	28.3	0.0	3.1	3	1	1	4	4	4	2	Winged	helix-turn-helix	DNA-binding
HTH_20	PF12840.7	gi|408403034|ref|YP_006861017.1|	-	1.4e-05	25.1	0.0	0.0014	18.6	0.0	2.4	3	0	0	3	3	2	1	Helix-turn-helix	domain
FaeA	PF04703.12	gi|408403034|ref|YP_006861017.1|	-	0.00014	22.2	0.0	0.058	13.8	0.0	2.2	2	0	0	2	2	2	2	FaeA-like	protein
TrmB	PF01978.19	gi|408403034|ref|YP_006861017.1|	-	0.0005	19.9	0.0	0.68	9.9	0.0	2.2	2	0	0	2	2	2	2	Sugar-specific	transcriptional	regulator	TrmB
HTH_5	PF01022.20	gi|408403034|ref|YP_006861017.1|	-	0.0006	19.6	0.0	0.0049	16.7	0.0	2.4	2	1	1	3	3	3	1	Bacterial	regulatory	protein,	arsR	family
MarR_2	PF12802.7	gi|408403034|ref|YP_006861017.1|	-	0.0014	18.4	0.0	0.17	11.8	0.0	2.2	2	0	0	2	2	2	1	MarR	family
Phage_NinH	PF06322.11	gi|408403034|ref|YP_006861017.1|	-	0.0027	17.6	0.0	0.0067	16.3	0.0	1.6	2	0	0	2	2	2	1	Phage	NinH	protein
HTH_IclR	PF09339.10	gi|408403034|ref|YP_006861017.1|	-	0.0041	16.9	0.0	0.023	14.5	0.0	2.1	2	0	0	2	2	2	1	IclR	helix-turn-helix	domain
HTH_41	PF14502.6	gi|408403034|ref|YP_006861017.1|	-	0.012	15.3	0.0	0.023	14.4	0.0	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain
GntR	PF00392.21	gi|408403034|ref|YP_006861017.1|	-	0.02	14.5	0.0	6.5	6.5	0.0	2.4	2	0	0	2	2	2	0	Bacterial	regulatory	proteins,	gntR	family
PaaX	PF07848.12	gi|408403034|ref|YP_006861017.1|	-	0.029	14.6	0.1	12	6.2	0.0	2.4	2	0	0	2	2	2	0	PaaX-like	protein
HTH_34	PF13601.6	gi|408403034|ref|YP_006861017.1|	-	0.041	14.1	0.0	0.14	12.4	0.0	1.7	2	0	0	2	2	2	0	Winged	helix	DNA-binding	domain
MarR	PF01047.22	gi|408403034|ref|YP_006861017.1|	-	0.14	12.1	0.0	2	8.4	0.0	2.4	3	0	0	3	3	3	0	MarR	family
7TM_GPCR_Sri	PF10327.9	gi|408403035|ref|YP_006861018.1|	-	0.049	12.8	1.3	0.061	12.5	0.2	1.7	2	0	0	2	2	2	0	Serpentine	type	7TM	GPCR	chemoreceptor	Sri
DUF202	PF02656.15	gi|408403035|ref|YP_006861018.1|	-	0.73	10.3	5.6	1.1	9.8	0.9	2.1	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF202)
CbtA	PF09490.10	gi|408403037|ref|YP_006861020.1|	-	9e-07	28.9	0.7	9.5e-07	28.8	0.7	1.0	1	0	0	1	1	1	1	Probable	cobalt	transporter	subunit	(CbtA)
FlgD_ig	PF13860.6	gi|408403038|ref|YP_006861021.1|	-	0.15	11.9	0.0	0.16	11.9	0.0	1.1	1	0	0	1	1	1	0	FlgD	Ig-like	domain
FlaG	PF03646.15	gi|408403038|ref|YP_006861021.1|	-	0.16	12.2	0.0	0.16	12.2	0.0	1.1	1	0	0	1	1	1	0	FlaG	protein
Cytochrom_D1	PF02239.16	gi|408403039|ref|YP_006861022.1|	-	1.3e-10	40.4	0.0	1.7e-07	30.1	0.0	2.1	1	1	1	2	2	2	2	Cytochrome	D1	heme	domain
Lactonase	PF10282.9	gi|408403039|ref|YP_006861022.1|	-	1.3e-07	31.3	0.0	5.4e-06	25.9	0.0	2.5	1	1	0	1	1	1	1	Lactonase,	7-bladed	beta-propeller
DUF1513	PF07433.11	gi|408403039|ref|YP_006861022.1|	-	0.0016	17.6	0.0	0.01	15.0	0.1	2.1	1	1	2	3	3	3	1	Protein	of	unknown	function	(DUF1513)
PD40	PF07676.12	gi|408403039|ref|YP_006861022.1|	-	0.0052	16.7	0.2	3.4	7.7	0.1	2.6	2	0	0	2	2	2	2	WD40-like	Beta	Propeller	Repeat
Arylesterase	PF01731.20	gi|408403039|ref|YP_006861022.1|	-	0.0099	16.1	0.0	12	6.2	0.0	3.0	2	1	2	4	4	4	2	Arylesterase
FlaG	PF03646.15	gi|408403039|ref|YP_006861022.1|	-	0.032	14.4	4.5	2.6	8.3	0.0	3.0	3	0	0	3	3	3	0	FlaG	protein
DUF4221	PF13970.6	gi|408403039|ref|YP_006861022.1|	-	0.038	13.6	0.0	6	6.3	0.0	2.7	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4221)
LVIVD	PF08309.11	gi|408403039|ref|YP_006861022.1|	-	0.081	12.3	0.1	0.32	10.3	0.0	2.0	2	0	0	2	2	2	0	LVIVD	repeat
YHS	PF04945.13	gi|408403041|ref|YP_006861024.1|	-	2.9e-16	59.3	4.7	3.1e-16	59.2	4.7	1.0	1	0	0	1	1	1	1	YHS	domain
ATPase-cat_bd	PF12156.8	gi|408403041|ref|YP_006861024.1|	-	2.9e-05	24.7	0.8	3.6e-05	24.4	0.8	1.0	1	0	0	1	1	1	1	Putative	metal-binding	domain	of	cation	transport	ATPase
Arc_trans_TRASH	PF08394.10	gi|408403041|ref|YP_006861024.1|	-	9.7e-05	22.6	2.9	0.00016	21.9	2.9	1.5	1	1	0	1	1	1	1	Archaeal	TRASH	domain
DsbD	PF02683.15	gi|408403042|ref|YP_006861025.1|	-	4.3e-09	36.6	13.6	4.3e-09	36.6	13.6	2.2	2	1	0	2	2	2	1	Cytochrome	C	biogenesis	protein	transmembrane	region
PgaD	PF13994.6	gi|408403042|ref|YP_006861025.1|	-	0.14	12.2	1.4	5	7.2	0.3	2.6	2	0	0	2	2	2	0	PgaD-like	protein
DUF4748	PF15932.5	gi|408403042|ref|YP_006861025.1|	-	0.48	10.2	5.3	0.43	10.4	1.0	2.5	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4748)
E1-E2_ATPase	PF00122.20	gi|408403042|ref|YP_006861025.1|	-	0.64	9.5	9.7	0.41	10.2	7.0	2.1	1	1	1	2	2	2	0	E1-E2	ATPase
DUF1189	PF06691.11	gi|408403042|ref|YP_006861025.1|	-	0.75	9.3	5.5	1.4	8.4	5.5	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1189)
Trp_oprn_chp	PF09534.10	gi|408403043|ref|YP_006861026.1|	-	0.039	13.7	0.2	0.052	13.3	0.2	1.3	1	0	0	1	1	1	0	Tryptophan-associated	transmembrane	protein	(Trp_oprn_chp)
DUF2254	PF10011.9	gi|408403043|ref|YP_006861026.1|	-	0.051	12.4	0.1	0.065	12.0	0.1	1.1	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2254)
DUF2615	PF11027.8	gi|408403043|ref|YP_006861026.1|	-	0.1	12.7	0.1	1.2	9.3	0.0	2.0	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF2615)
OATP	PF03137.20	gi|408403043|ref|YP_006861026.1|	-	0.18	10.1	0.0	1.9	6.7	0.0	1.8	1	1	1	2	2	2	0	Organic	Anion	Transporter	Polypeptide	(OATP)	family
PsbN	PF02468.15	gi|408403043|ref|YP_006861026.1|	-	0.43	10.5	1.9	0.87	9.5	1.9	1.5	1	0	0	1	1	1	0	Photosystem	II	reaction	centre	N	protein	(psbN)
Thioredoxin	PF00085.20	gi|408403044|ref|YP_006861027.1|	-	6.5e-26	90.3	0.0	7.3e-26	90.2	0.0	1.0	1	0	0	1	1	1	1	Thioredoxin
OST3_OST6	PF04756.13	gi|408403044|ref|YP_006861027.1|	-	2.2e-07	30.5	0.0	2.3e-07	30.5	0.0	1.1	1	0	0	1	1	1	1	OST3	/	OST6	family,	transporter	family
Thioredoxin_8	PF13905.6	gi|408403044|ref|YP_006861027.1|	-	6.7e-07	29.6	0.0	1.7e-06	28.2	0.0	1.6	1	1	0	1	1	1	1	Thioredoxin-like
Thioredoxin_2	PF13098.6	gi|408403044|ref|YP_006861027.1|	-	3.3e-06	27.5	0.1	1.4e-05	25.5	0.1	1.8	1	1	0	1	1	1	1	Thioredoxin-like	domain
Thioredoxin_3	PF13192.6	gi|408403044|ref|YP_006861027.1|	-	2.5e-05	24.2	0.0	3.6e-05	23.7	0.0	1.2	1	0	0	1	1	1	1	Thioredoxin	domain
AhpC-TSA	PF00578.21	gi|408403044|ref|YP_006861027.1|	-	0.00036	20.4	0.1	0.0022	17.9	0.1	1.8	1	1	1	2	2	2	1	AhpC/TSA	family
Thioredoxin_9	PF14595.6	gi|408403044|ref|YP_006861027.1|	-	0.0005	19.8	0.0	0.00056	19.7	0.0	1.1	1	0	0	1	1	1	1	Thioredoxin
Redoxin	PF08534.10	gi|408403044|ref|YP_006861027.1|	-	0.00051	19.8	0.1	0.0013	18.5	0.1	1.5	1	1	1	2	2	2	1	Redoxin
Thioredoxin_7	PF13899.6	gi|408403044|ref|YP_006861027.1|	-	0.0028	17.8	0.1	0.0039	17.3	0.1	1.2	1	0	0	1	1	1	1	Thioredoxin-like
Thioredoxin_6	PF13848.6	gi|408403044|ref|YP_006861027.1|	-	0.0041	17.1	0.0	0.005	16.8	0.0	1.2	1	0	0	1	1	1	1	Thioredoxin-like	domain
TraF	PF13728.6	gi|408403044|ref|YP_006861027.1|	-	0.062	13.1	0.0	0.064	13.1	0.0	1.1	1	0	0	1	1	1	0	F	plasmid	transfer	operon	protein
Glutaredoxin	PF00462.24	gi|408403044|ref|YP_006861027.1|	-	0.065	13.5	0.2	0.11	12.8	0.2	1.4	1	1	0	1	1	1	0	Glutaredoxin
HyaE	PF07449.11	gi|408403044|ref|YP_006861027.1|	-	0.085	12.8	0.0	0.12	12.3	0.0	1.3	1	0	0	1	1	1	0	Hydrogenase-1	expression	protein	HyaE
DUF953	PF06110.11	gi|408403044|ref|YP_006861027.1|	-	0.12	12.0	0.1	0.15	11.6	0.1	1.3	1	0	0	1	1	1	0	Eukaryotic	protein	of	unknown	function	(DUF953)
DIM1	PF02966.16	gi|408403044|ref|YP_006861027.1|	-	0.16	11.7	0.0	0.2	11.5	0.0	1.1	1	0	0	1	1	1	0	Mitosis	protein	DIM1
Hormone_4	PF00220.17	gi|408403045|ref|YP_006861028.1|	-	0.17	11.9	3.6	0.49	10.5	3.6	1.8	1	0	0	1	1	1	0	Neurohypophysial	hormones,	N-terminal	Domain
P-II	PF00543.22	gi|408403046|ref|YP_006861029.1|	-	5.5e-17	62.2	0.0	6.6e-17	62.0	0.0	1.0	1	0	0	1	1	1	1	Nitrogen	regulatory	protein	P-II
Cu-oxidase_3	PF07732.15	gi|408403047|ref|YP_006861030.1|	-	6.9e-12	45.4	0.5	1.4e-11	44.4	0.5	1.5	1	0	0	1	1	1	1	Multicopper	oxidase
Cu-oxidase_2	PF07731.14	gi|408403047|ref|YP_006861030.1|	-	5.4e-07	29.4	2.0	0.0015	18.3	0.6	3.5	2	2	0	2	2	2	2	Multicopper	oxidase
Cu-oxidase	PF00394.22	gi|408403047|ref|YP_006861030.1|	-	0.0013	18.9	0.0	0.049	13.8	0.0	2.7	2	1	0	2	2	2	1	Multicopper	oxidase
PliI	PF16743.5	gi|408403047|ref|YP_006861030.1|	-	0.067	12.9	0.0	2.1	8.1	0.0	2.4	2	0	0	2	2	2	0	Periplasmic	lysozyme	inhibitor	of	I-type	lysozyme
SoxE	PF06525.11	gi|408403047|ref|YP_006861030.1|	-	0.12	11.9	2.7	2.2	7.8	2.7	2.4	1	1	0	1	1	1	0	Sulfocyanin	(SoxE)	domain
DUF4428	PF14471.6	gi|408403048|ref|YP_006861031.1|	-	4.3e-05	23.3	20.3	0.0063	16.4	0.3	4.4	3	2	0	3	3	3	2	Domain	of	unknown	function	(DUF4428)
Prok-RING_4	PF14447.6	gi|408403048|ref|YP_006861031.1|	-	0.00036	20.3	11.8	0.058	13.3	0.5	4.3	4	1	0	4	4	4	2	Prokaryotic	RING	finger	family	4
RecO_C	PF02565.15	gi|408403048|ref|YP_006861031.1|	-	0.0026	17.6	4.7	0.68	9.7	0.1	3.0	2	1	1	3	3	3	2	Recombination	protein	O	C	terminal
C1_1	PF00130.22	gi|408403048|ref|YP_006861031.1|	-	0.0038	17.1	14.2	0.82	9.6	0.6	3.5	2	1	1	3	3	3	2	Phorbol	esters/diacylglycerol	binding	domain	(C1	domain)
zf-UDP	PF14569.6	gi|408403048|ref|YP_006861031.1|	-	0.0044	17.1	4.8	0.067	13.3	1.1	3.3	3	1	0	3	3	3	1	Zinc-binding	RING-finger
NMD3	PF04981.13	gi|408403048|ref|YP_006861031.1|	-	0.0057	16.2	4.5	0.0057	16.2	4.5	2.1	1	1	1	2	2	2	1	NMD3	family
LIM	PF00412.22	gi|408403048|ref|YP_006861031.1|	-	0.033	14.4	13.7	0.34	11.2	0.3	4.0	2	1	0	3	3	3	0	LIM	domain
Yippee-Mis18	PF03226.14	gi|408403048|ref|YP_006861031.1|	-	0.093	13.0	12.4	2.2	8.5	5.7	3.0	1	1	0	2	2	2	0	Yippee	zinc-binding/DNA-binding	/Mis18,	centromere	assembly
Cytochrome_C7	PF14522.6	gi|408403048|ref|YP_006861031.1|	-	0.11	12.5	11.6	3.7	7.6	7.6	3.1	2	1	0	2	2	2	0	Cytochrome	c7	and	related	cytochrome	c
DUF678	PF05077.12	gi|408403048|ref|YP_006861031.1|	-	0.14	12.3	2.3	15	5.8	0.0	2.9	3	1	0	3	3	3	0	Protein	of	unknown	function	(DUF678)
Rsm1	PF08600.10	gi|408403048|ref|YP_006861031.1|	-	0.16	12.1	6.9	5.4	7.2	0.2	2.8	2	1	0	2	2	2	0	Rsm1-like
zf-BED	PF02892.15	gi|408403048|ref|YP_006861031.1|	-	0.34	11.0	0.1	0.34	11.0	0.1	4.0	4	1	1	5	5	5	0	BED	zinc	finger
DZR	PF12773.7	gi|408403048|ref|YP_006861031.1|	-	1	9.5	14.2	2.6e+03	-1.5	14.2	3.7	1	1	0	1	1	1	0	Double	zinc	ribbon
Paired_CXXCH_1	PF09699.10	gi|408403048|ref|YP_006861031.1|	-	4	7.3	10.8	0.51	10.1	1.5	3.6	4	1	0	4	4	4	0	Doubled	CXXCH	motif	(Paired_CXXCH_1)
zf-CHY	PF05495.12	gi|408403048|ref|YP_006861031.1|	-	4.9	7.7	17.9	8.2e+03	-2.6	17.9	3.7	1	1	0	1	1	1	0	CHY	zinc	finger
Cript	PF10235.9	gi|408403048|ref|YP_006861031.1|	-	9.2	6.9	17.0	1.1	9.8	1.3	3.5	2	1	1	3	3	3	0	Microtubule-associated	protein	CRIPT
DNA_RNApol_7kD	PF03604.13	gi|408403049|ref|YP_006861032.1|	-	1.3e-05	24.8	2.6	2.3e-05	23.9	2.6	1.4	1	1	0	1	1	1	1	DNA	directed	RNA	polymerase,	7	kDa	subunit
zf-Mss51	PF13824.6	gi|408403049|ref|YP_006861032.1|	-	0.0091	16.1	0.0	0.015	15.4	0.0	1.4	1	0	0	1	1	1	1	Zinc-finger	of	mitochondrial	splicing	suppressor	51
PEP-utilizers_C	PF02896.18	gi|408403050|ref|YP_006861033.1|	-	6.3e-88	294.7	0.7	8.8e-88	294.2	0.7	1.2	1	0	0	1	1	1	1	PEP-utilising	enzyme,	TIM	barrel	domain
PPDK_N	PF01326.19	gi|408403050|ref|YP_006861033.1|	-	4.4e-56	190.5	0.0	1.1e-43	149.8	0.0	3.2	1	1	1	2	2	2	2	Pyruvate	phosphate	dikinase,	PEP/pyruvate	binding	domain
PEP-utilizers	PF00391.23	gi|408403050|ref|YP_006861033.1|	-	1.8e-27	94.8	0.3	1.1e-26	92.4	0.3	2.2	2	0	0	2	2	2	1	PEP-utilising	enzyme,	mobile	domain
HpcH_HpaI	PF03328.14	gi|408403050|ref|YP_006861033.1|	-	0.025	13.7	0.1	0.046	12.8	0.1	1.4	1	0	0	1	1	1	0	HpcH/HpaI	aldolase/citrate	lyase	family
UPF0126	PF03458.13	gi|408403051|ref|YP_006861034.1|	-	1.2e-42	143.7	24.4	7.8e-23	80.2	6.9	2.2	2	0	0	2	2	2	2	UPF0126	domain
B12D	PF06522.11	gi|408403051|ref|YP_006861034.1|	-	0.11	12.4	0.2	0.11	12.4	0.2	3.2	5	0	0	5	5	5	0	NADH-ubiquinone	reductase	complex	1	MLRQ	subunit
Response_reg	PF00072.24	gi|408403052|ref|YP_006861035.1|	-	0.0028	17.8	0.0	0.003	17.7	0.0	1.0	1	0	0	1	1	1	1	Response	regulator	receiver	domain
Response_reg	PF00072.24	gi|408403053|ref|YP_006861036.1|	-	2.9e-06	27.4	0.0	3e-06	27.3	0.0	1.0	1	0	0	1	1	1	1	Response	regulator	receiver	domain
DinI	PF06183.13	gi|408403053|ref|YP_006861036.1|	-	0.16	12.3	0.0	0.21	12.0	0.0	1.1	1	0	0	1	1	1	0	DinI-like	family
Lactamase_B_3	PF13483.6	gi|408403054|ref|YP_006861037.1|	-	8.2e-05	22.5	0.1	0.00033	20.6	0.1	1.9	2	0	0	2	2	2	1	Beta-lactamase	superfamily	domain
RMMBL	PF07521.12	gi|408403054|ref|YP_006861037.1|	-	0.00034	20.5	0.0	0.00078	19.3	0.0	1.6	1	0	0	1	1	1	1	Zn-dependent	metallo-hydrolase	RNA	specificity	domain
Lactamase_B_2	PF12706.7	gi|408403054|ref|YP_006861037.1|	-	0.0013	18.3	1.3	0.039	13.4	0.9	2.8	2	1	0	3	3	3	1	Beta-lactamase	superfamily	domain
DRMBL	PF07522.14	gi|408403054|ref|YP_006861037.1|	-	0.038	14.2	0.0	0.073	13.3	0.0	1.5	1	1	0	1	1	1	0	DNA	repair	metallo-beta-lactamase
TBPIP	PF07106.13	gi|408403057|ref|YP_006861040.1|	-	0.036	14.0	0.0	0.045	13.7	0.0	1.3	1	1	0	1	1	1	0	TBPIP/Hop2	winged	helix	domain
WD40_3	PF15911.5	gi|408403058|ref|YP_006861041.1|	-	0.089	12.8	0.0	0.18	11.9	0.0	1.4	1	0	0	1	1	1	0	WD	domain,	G-beta	repeat
Formyl_trans_N	PF00551.19	gi|408403059|ref|YP_006861042.1|	-	2.8e-50	170.6	0.0	3.2e-50	170.4	0.0	1.0	1	0	0	1	1	1	1	Formyl	transferase
MFS_1	PF07690.16	gi|408403060|ref|YP_006861043.1|	-	3.4e-32	111.7	56.1	2.5e-25	89.2	25.1	2.0	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
MFS_4	PF06779.14	gi|408403060|ref|YP_006861043.1|	-	2.3e-17	63.4	31.0	2.7e-17	63.1	31.0	1.0	1	0	0	1	1	1	1	Uncharacterised	MFS-type	transporter	YbfB
MFS_1_like	PF12832.7	gi|408403060|ref|YP_006861043.1|	-	4.6e-05	22.4	30.1	0.00015	20.8	8.7	2.2	1	1	1	2	2	2	2	MFS_1	like	family
MFS_3	PF05977.13	gi|408403060|ref|YP_006861043.1|	-	1.2	7.5	27.0	1.5	7.1	27.0	1.2	1	0	0	1	1	1	0	Transmembrane	secretion	effector
Ubie_methyltran	PF01209.18	gi|408403061|ref|YP_006861044.1|	-	4.5e-22	78.5	0.0	5e-22	78.4	0.0	1.0	1	0	0	1	1	1	1	ubiE/COQ5	methyltransferase	family
Methyltransf_11	PF08241.12	gi|408403061|ref|YP_006861044.1|	-	9.9e-16	58.2	0.0	1.5e-15	57.6	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.6	gi|408403061|ref|YP_006861044.1|	-	9.1e-15	55.2	0.0	1.4e-14	54.5	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.6	gi|408403061|ref|YP_006861044.1|	-	7.2e-11	42.1	0.0	1.2e-10	41.4	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.6	gi|408403061|ref|YP_006861044.1|	-	4.1e-09	36.5	0.0	4.6e-09	36.3	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.12	gi|408403061|ref|YP_006861044.1|	-	2.4e-07	31.4	0.0	5.7e-07	30.2	0.0	1.6	1	0	0	1	1	1	1	Methyltransferase	domain
MTS	PF05175.14	gi|408403061|ref|YP_006861044.1|	-	0.0012	18.4	0.0	0.0021	17.6	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	small	domain
Methyltransf_8	PF05148.15	gi|408403061|ref|YP_006861044.1|	-	0.0075	16.1	0.0	0.01	15.7	0.0	1.2	1	0	0	1	1	1	1	Hypothetical	methyltransferase
DUF87	PF01935.17	gi|408403061|ref|YP_006861044.1|	-	0.11	12.6	0.0	0.58	10.2	0.0	1.9	1	1	1	2	2	2	0	Helicase	HerA,	central	domain
GH114_assoc	PF14741.6	gi|408403062|ref|YP_006861045.1|	-	0.094	12.9	0.0	0.37	11.0	0.0	1.7	2	0	0	2	2	2	0	N-terminal	glycosyl-hydrolase-114-associated	domain
DEAD	PF00270.29	gi|408403064|ref|YP_006861047.1|	-	7.3e-33	113.8	0.0	1.8e-32	112.5	0.0	1.7	2	0	0	2	2	2	1	DEAD/DEAH	box	helicase
Helicase_C	PF00271.31	gi|408403064|ref|YP_006861047.1|	-	1.7e-14	54.1	0.3	4.7e-11	43.0	0.0	2.8	3	0	0	3	3	3	2	Helicase	conserved	C-terminal	domain
DUF1998	PF09369.10	gi|408403064|ref|YP_006861047.1|	-	1.4e-10	41.8	0.1	1.4e-09	38.5	0.1	2.6	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF1998)
zinc_ribbon_4	PF13717.6	gi|408403064|ref|YP_006861047.1|	-	0.025	14.5	1.6	0.025	14.5	1.6	2.3	2	0	0	2	2	2	0	zinc-ribbon	domain
SNF2_N	PF00176.23	gi|408403064|ref|YP_006861047.1|	-	0.092	11.4	0.0	0.15	10.8	0.0	1.3	1	0	0	1	1	1	0	SNF2	family	N-terminal	domain
Topoisom_I_N	PF02919.15	gi|408403066|ref|YP_006861049.1|	-	3.9e-70	235.7	2.1	3.9e-70	235.7	2.1	2.2	2	0	0	2	2	2	1	Eukaryotic	DNA	topoisomerase	I,	DNA	binding	fragment
Topoisom_I	PF01028.20	gi|408403066|ref|YP_006861049.1|	-	2e-66	223.6	3.4	2e-66	223.6	3.4	1.7	2	0	0	2	2	2	1	Eukaryotic	DNA	topoisomerase	I,	catalytic	core
Topo_C_assoc	PF14370.6	gi|408403066|ref|YP_006861049.1|	-	1.8e-21	75.9	1.1	1.8e-21	75.9	1.1	2.9	3	0	0	3	3	3	1	C-terminal	topoisomerase	domain
DUF2120	PF09893.9	gi|408403066|ref|YP_006861049.1|	-	0.85	9.7	4.7	1.2	9.2	0.8	3.1	3	1	1	4	4	4	0	Uncharacterized	protein	conserved	in	archaea	(DUF2120)
AAA_23	PF13476.6	gi|408403066|ref|YP_006861049.1|	-	1.3	9.5	18.7	0.095	13.2	6.2	2.5	2	0	0	2	2	2	0	AAA	domain
MarR_2	PF12802.7	gi|408403067|ref|YP_006861050.1|	-	0.00012	21.9	0.0	0.00044	20.1	0.0	1.9	1	0	0	1	1	1	1	MarR	family
TrmB	PF01978.19	gi|408403067|ref|YP_006861050.1|	-	0.00089	19.1	0.0	0.0016	18.3	0.0	1.4	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_IclR	PF09339.10	gi|408403067|ref|YP_006861050.1|	-	0.011	15.5	0.0	0.021	14.6	0.0	1.4	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
MarR	PF01047.22	gi|408403067|ref|YP_006861050.1|	-	0.015	15.2	0.0	0.032	14.2	0.0	1.5	1	0	0	1	1	1	0	MarR	family
HTH_micro	PF17007.5	gi|408403067|ref|YP_006861050.1|	-	0.034	13.0	0.0	0.05	12.4	0.0	1.1	1	0	0	1	1	1	0	HTH-like
SMBP	PF16785.5	gi|408403067|ref|YP_006861050.1|	-	0.05	13.8	7.8	0.31	11.3	0.0	2.2	1	1	1	2	2	2	0	Small	metal-binding	protein
HTH_24	PF13412.6	gi|408403067|ref|YP_006861050.1|	-	0.067	12.8	0.0	0.14	11.7	0.0	1.6	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
HA1	PF18239.1	gi|408403067|ref|YP_006861050.1|	-	0.12	12.3	0.0	0.24	11.3	0.0	1.5	1	0	0	1	1	1	0	Hemagglutinin	I
HTH_27	PF13463.6	gi|408403067|ref|YP_006861050.1|	-	0.16	12.5	0.0	0.36	11.4	0.0	1.6	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
TPR_16	PF13432.6	gi|408403067|ref|YP_006861050.1|	-	0.8	10.4	0.1	0.8	10.4	0.1	2.9	2	1	1	3	3	3	0	Tetratricopeptide	repeat
CBS	PF00571.28	gi|408403068|ref|YP_006861051.1|	-	4.6e-17	62.2	5.2	1.4e-08	35.1	0.4	2.5	2	0	0	2	2	2	2	CBS	domain
zf-C2H2_4	PF13894.6	gi|408403068|ref|YP_006861051.1|	-	0.0013	19.4	0.3	0.0042	17.8	0.1	2.0	2	0	0	2	2	2	1	C2H2-type	zinc	finger
zf-C2H2	PF00096.26	gi|408403068|ref|YP_006861051.1|	-	0.003	17.9	0.1	0.0067	16.8	0.1	1.6	1	0	0	1	1	1	1	Zinc	finger,	C2H2	type
zf-Di19	PF05605.12	gi|408403068|ref|YP_006861051.1|	-	0.0066	16.7	0.0	0.018	15.3	0.0	1.8	1	0	0	1	1	1	1	Drought	induced	19	protein	(Di19),	zinc-binding
zf-C2H2_2	PF12756.7	gi|408403068|ref|YP_006861051.1|	-	0.027	14.8	0.0	0.052	13.9	0.0	1.4	1	0	0	1	1	1	0	C2H2	type	zinc-finger	(2	copies)
zf-C2H2_9	PF16293.5	gi|408403068|ref|YP_006861051.1|	-	0.028	14.3	0.0	0.079	12.8	0.0	1.8	1	0	0	1	1	1	0	C2H2	type	zinc-finger	(1	copy)
PyrI_C	PF02748.15	gi|408403068|ref|YP_006861051.1|	-	0.06	13.3	0.2	0.14	12.1	0.2	1.6	1	0	0	1	1	1	0	Aspartate	carbamoyltransferase	regulatory	chain,	metal	binding	domain
Rad50_zn_hook	PF04423.14	gi|408403068|ref|YP_006861051.1|	-	0.11	12.3	0.0	0.22	11.4	0.0	1.5	1	0	0	1	1	1	0	Rad50	zinc	hook	motif
zinc_ribbon_4	PF13717.6	gi|408403070|ref|YP_006861053.1|	-	6.8e-05	22.7	1.9	0.0001	22.2	1.9	1.3	1	0	0	1	1	1	1	zinc-ribbon	domain
Zn_Tnp_IS1595	PF12760.7	gi|408403070|ref|YP_006861053.1|	-	0.00041	20.3	3.2	0.00044	20.2	3.2	1.1	1	0	0	1	1	1	1	Transposase	zinc-ribbon	domain
Rubredoxin_2	PF18073.1	gi|408403070|ref|YP_006861053.1|	-	0.0096	15.6	6.1	0.068	12.9	0.1	2.1	2	0	0	2	2	2	1	Rubredoxin	metal	binding	domain
zinc-ribbons_6	PF07191.12	gi|408403070|ref|YP_006861053.1|	-	0.0099	15.8	0.4	0.013	15.5	0.4	1.3	1	0	0	1	1	1	1	zinc-ribbons
FANCL_C	PF11793.8	gi|408403070|ref|YP_006861053.1|	-	0.017	15.3	0.8	0.63	10.3	0.1	2.1	2	0	0	2	2	2	0	FANCL	C-terminal	domain
UPF0515	PF15135.6	gi|408403070|ref|YP_006861053.1|	-	0.026	13.9	0.9	0.026	13.9	0.9	1.0	1	0	0	1	1	1	0	Uncharacterised	protein	UPF0515
zf-TFIIB	PF13453.6	gi|408403070|ref|YP_006861053.1|	-	0.041	13.2	2.1	0.055	12.8	2.1	1.2	1	0	0	1	1	1	0	Transcription	factor	zinc-finger
MCR	PF18509.1	gi|408403070|ref|YP_006861053.1|	-	0.045	13.3	2.7	0.13	11.9	0.2	2.1	2	0	0	2	2	2	0	Magnetochrome	domain
TF_Zn_Ribbon	PF08271.12	gi|408403070|ref|YP_006861053.1|	-	0.075	12.6	1.9	0.12	11.9	1.9	1.3	1	1	0	1	1	1	0	TFIIB	zinc-binding
HypA	PF01155.19	gi|408403070|ref|YP_006861053.1|	-	0.25	11.4	2.2	5.2	7.1	0.1	1.7	1	1	1	2	2	2	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
zinc_ribbon_5	PF13719.6	gi|408403070|ref|YP_006861053.1|	-	0.32	10.8	4.9	2.4	8.0	4.9	2.0	1	1	0	1	1	1	0	zinc-ribbon	domain
Zn_Tnp_IS1	PF03811.13	gi|408403070|ref|YP_006861053.1|	-	0.4	10.5	4.9	1.6	8.5	4.9	1.8	1	1	0	1	1	1	0	InsA	N-terminal	domain
zinc_ribbon_10	PF10058.9	gi|408403070|ref|YP_006861053.1|	-	0.51	10.1	4.1	1.3	8.8	4.0	1.7	1	1	0	1	1	1	0	Predicted	integral	membrane	zinc-ribbon	metal-binding	protein
Lyase_1	PF00206.20	gi|408403071|ref|YP_006861054.1|	-	4.1e-46	157.8	0.5	4.1e-46	157.8	0.5	2.1	2	1	0	2	2	2	1	Lyase
ADSL_C	PF10397.9	gi|408403071|ref|YP_006861054.1|	-	2.7e-13	50.3	0.1	2.7e-13	50.3	0.1	2.1	2	0	0	2	2	2	1	Adenylosuccinate	lyase	C-terminus
FAM83	PF07894.12	gi|408403071|ref|YP_006861054.1|	-	0.11	12.1	1.5	0.76	9.3	0.1	2.2	1	1	0	2	2	2	0	FAM83	A-H
BORCS7	PF16088.5	gi|408403071|ref|YP_006861054.1|	-	0.15	12.3	4.8	1.8	8.8	0.1	3.2	3	0	0	3	3	3	0	BLOC-1-related	complex	sub-unit	7
DUF4618	PF15397.6	gi|408403071|ref|YP_006861054.1|	-	0.16	11.4	2.5	0.68	9.3	0.5	2.3	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4618)
RtcB	PF01139.17	gi|408403072|ref|YP_006861055.1|	-	7.8e-163	542.4	0.0	8.8e-163	542.3	0.0	1.0	1	0	0	1	1	1	1	tRNA-splicing	ligase	RtcB
DUF993	PF06187.11	gi|408403072|ref|YP_006861055.1|	-	0.048	12.6	0.0	0.075	11.9	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF993)
Complex1_LYR	PF05347.15	gi|408403072|ref|YP_006861055.1|	-	0.089	12.8	0.4	0.16	12.0	0.4	1.4	1	0	0	1	1	1	0	Complex	1	protein	(LYR	family)
dsDNA_bind	PF01984.20	gi|408403073|ref|YP_006861056.1|	-	1.2e-05	25.6	0.1	1.5e-05	25.3	0.1	1.1	1	0	0	1	1	1	1	Double-stranded	DNA-binding	domain
DNA_pol_alpha_N	PF12254.8	gi|408403075|ref|YP_006861058.1|	-	0.062	13.4	0.0	0.069	13.2	0.0	1.1	1	0	0	1	1	1	0	DNA	polymerase	alpha	subunit	p180	N	terminal
Methyltransf_25	PF13649.6	gi|408403077|ref|YP_006861060.1|	-	1.8e-12	47.8	0.0	2.4e-12	47.4	0.0	1.1	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_11	PF08241.12	gi|408403077|ref|YP_006861060.1|	-	2.6e-11	44.0	0.0	3.4e-11	43.6	0.0	1.1	1	0	0	1	1	1	1	Methyltransferase	domain
Ubie_methyltran	PF01209.18	gi|408403077|ref|YP_006861060.1|	-	1.9e-09	37.2	0.0	2.3e-09	37.0	0.0	1.0	1	0	0	1	1	1	1	ubiE/COQ5	methyltransferase	family
Methyltransf_31	PF13847.6	gi|408403077|ref|YP_006861060.1|	-	2.6e-05	24.1	0.0	2.9e-05	23.9	0.0	1.1	1	0	0	1	1	1	1	Methyltransferase	domain
MTS	PF05175.14	gi|408403077|ref|YP_006861060.1|	-	0.00042	19.9	0.0	0.00047	19.8	0.0	1.1	1	0	0	1	1	1	1	Methyltransferase	small	domain
Methyltransf_23	PF13489.6	gi|408403077|ref|YP_006861060.1|	-	0.0017	18.2	0.0	0.0018	18.1	0.0	1.1	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.12	gi|408403077|ref|YP_006861060.1|	-	0.0092	16.7	0.0	0.011	16.4	0.0	1.1	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_32	PF13679.6	gi|408403077|ref|YP_006861060.1|	-	0.013	15.4	0.0	0.016	15.2	0.0	1.1	1	0	0	1	1	1	0	Methyltransferase	domain
MetW	PF07021.12	gi|408403077|ref|YP_006861060.1|	-	0.034	13.7	0.0	0.048	13.3	0.0	1.3	1	1	0	1	1	1	0	Methionine	biosynthesis	protein	MetW
PrmA	PF06325.13	gi|408403077|ref|YP_006861060.1|	-	0.046	13.1	0.0	0.05	13.0	0.0	1.1	1	0	0	1	1	1	0	Ribosomal	protein	L11	methyltransferase	(PrmA)
PCMT	PF01135.19	gi|408403077|ref|YP_006861060.1|	-	0.051	13.3	0.0	0.055	13.2	0.0	1.1	1	0	0	1	1	1	0	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
Ribosomal_S11	PF00411.19	gi|408403078|ref|YP_006861061.1|	-	5.5e-44	149.1	1.5	6.4e-44	148.9	1.5	1.0	1	0	0	1	1	1	1	Ribosomal	protein	S11
AIRS	PF00586.24	gi|408403079|ref|YP_006861062.1|	-	1.3e-17	64.2	0.5	3.7e-17	62.8	0.2	1.8	2	0	0	2	2	2	1	AIR	synthase	related	protein,	N-terminal	domain
AIRS_C	PF02769.22	gi|408403079|ref|YP_006861062.1|	-	1.9e-05	24.9	0.2	3.8e-05	23.9	0.1	1.5	2	0	0	2	2	2	1	AIR	synthase	related	protein,	C-terminal	domain
Wyosine_form	PF08608.12	gi|408403079|ref|YP_006861062.1|	-	0.0051	17.1	0.0	0.014	15.8	0.0	1.7	2	0	0	2	2	2	1	Wyosine	base	formation
PGM_PMM_I	PF02878.16	gi|408403080|ref|YP_006861063.1|	-	9.7e-26	90.1	0.1	2.2e-25	89.0	0.1	1.6	1	0	0	1	1	1	1	Phosphoglucomutase/phosphomannomutase,	alpha/beta/alpha	domain	I
PGM_PMM_III	PF02880.16	gi|408403080|ref|YP_006861063.1|	-	3.1e-15	56.3	0.1	7e-15	55.2	0.1	1.6	1	0	0	1	1	1	1	Phosphoglucomutase/phosphomannomutase,	alpha/beta/alpha	domain	III
PGM_PMM_II	PF02879.16	gi|408403080|ref|YP_006861063.1|	-	9.9e-13	48.6	0.2	2.6e-12	47.3	0.2	1.7	1	0	0	1	1	1	1	Phosphoglucomutase/phosphomannomutase,	alpha/beta/alpha	domain	II
PGM_PMM_IV	PF00408.20	gi|408403080|ref|YP_006861063.1|	-	1.3e-07	31.7	0.0	4e-07	30.1	0.0	1.8	1	0	0	1	1	1	1	Phosphoglucomutase/phosphomannomutase,	C-terminal	domain
HTH_OrfB_IS605	PF12323.8	gi|408403081|ref|YP_006861064.1|	-	2.1e-06	27.1	0.0	4.6e-06	26.0	0.0	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain
Peptidase_M43	PF05572.13	gi|408403084|ref|YP_006861067.1|	-	0.013	15.5	0.2	0.021	14.8	0.2	1.5	1	1	0	1	1	1	0	Pregnancy-associated	plasma	protein-A
DUF4953	PF16313.5	gi|408403084|ref|YP_006861067.1|	-	0.1	11.8	0.1	0.16	11.2	0.1	1.2	1	0	0	1	1	1	0	Met-zincin
Peptidase_M57	PF12388.8	gi|408403084|ref|YP_006861067.1|	-	0.11	12.1	0.0	0.16	11.6	0.0	1.3	1	0	0	1	1	1	0	Dual-action	HEIGH	metallo-peptidase
Reprolysin_3	PF13582.6	gi|408403084|ref|YP_006861067.1|	-	0.13	12.8	0.0	0.15	12.6	0.0	1.3	1	0	0	1	1	1	0	Metallo-peptidase	family	M12B	Reprolysin-like
Peptidase_M10	PF00413.24	gi|408403084|ref|YP_006861067.1|	-	0.13	12.1	0.1	0.25	11.2	0.1	1.4	1	1	0	1	1	1	0	Matrixin
HTH_20	PF12840.7	gi|408403085|ref|YP_006861068.1|	-	0.0068	16.4	0.0	0.0092	16.0	0.0	1.2	1	0	0	1	1	1	1	Helix-turn-helix	domain
HxlR	PF01638.17	gi|408403085|ref|YP_006861068.1|	-	0.019	14.8	0.0	0.024	14.5	0.0	1.3	1	0	0	1	1	1	0	HxlR-like	helix-turn-helix
DUF488	PF04343.13	gi|408403086|ref|YP_006861069.1|	-	0.023	15.3	0.0	0.025	15.2	0.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function,	DUF488
DUF2062	PF09835.9	gi|408403091|ref|YP_006861074.1|	-	0.022	14.6	0.1	0.037	13.9	0.1	1.4	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2062)
Phage_integr_3	PF16795.5	gi|408403092|ref|YP_006861075.1|	-	8.5e-06	25.8	0.0	1.2e-05	25.3	0.0	1.3	1	1	0	1	1	1	1	Archaeal	phage	integrase
MEDS	PF14417.6	gi|408403094|ref|YP_006861077.1|	-	1.7e-19	70.2	0.0	5.6e-19	68.5	0.0	1.8	1	1	1	2	2	2	1	MEDS:	MEthanogen/methylotroph,	DcmR	Sensory	domain
ATPase	PF06745.13	gi|408403094|ref|YP_006861077.1|	-	0.053	12.9	0.1	0.12	11.7	0.0	1.5	2	0	0	2	2	2	0	KaiC
MEDS	PF14417.6	gi|408403095|ref|YP_006861078.1|	-	1.7e-09	37.7	0.0	2e-09	37.5	0.0	1.1	1	0	0	1	1	1	1	MEDS:	MEthanogen/methylotroph,	DcmR	Sensory	domain
ATPase	PF06745.13	gi|408403095|ref|YP_006861078.1|	-	0.002	17.5	0.0	0.0024	17.3	0.0	1.1	1	0	0	1	1	1	1	KaiC
DUF4179	PF13786.6	gi|408403098|ref|YP_006861081.1|	-	0.039	14.4	0.0	0.078	13.4	0.0	1.6	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4179)
Endotoxin_mid	PF09131.10	gi|408403098|ref|YP_006861081.1|	-	0.072	12.8	0.6	0.11	12.1	0.1	1.5	2	0	0	2	2	2	0	Bacillus	thuringiensis	delta-Endotoxin,	middle	domain
CaiF_GrlA	PF07180.11	gi|408403098|ref|YP_006861081.1|	-	0.19	11.7	0.0	0.36	10.8	0.0	1.4	1	0	0	1	1	1	0	CaiF/GrlA	transcriptional	regulator
TM2	PF05154.16	gi|408403099|ref|YP_006861082.1|	-	0.013	15.8	7.9	0.013	15.8	7.9	2.3	2	0	0	2	2	2	0	TM2	domain
EamA	PF00892.20	gi|408403099|ref|YP_006861082.1|	-	0.017	15.3	3.9	0.021	15.0	3.9	1.1	1	0	0	1	1	1	0	EamA-like	transporter	family
OATP	PF03137.20	gi|408403099|ref|YP_006861082.1|	-	0.052	11.8	0.3	0.052	11.8	0.3	1.1	1	0	0	1	1	1	0	Organic	Anion	Transporter	Polypeptide	(OATP)	family
DUF1206	PF06724.11	gi|408403099|ref|YP_006861082.1|	-	0.19	11.9	11.4	0.028	14.5	4.9	2.5	1	1	1	2	2	2	0	Domain	of	Unknown	Function	(DUF1206)
CPBP	PF02517.16	gi|408403099|ref|YP_006861082.1|	-	0.44	11.0	2.9	0.59	10.5	2.9	1.4	1	1	0	1	1	1	0	CPBP	intramembrane	metalloprotease
PEP-CTERM	PF07589.11	gi|408403099|ref|YP_006861082.1|	-	1.5	9.0	3.7	9.5	6.5	0.0	3.2	3	0	0	3	3	3	0	PEP-CTERM	motif
CitMHS	PF03600.16	gi|408403101|ref|YP_006861084.1|	-	9.1e-34	117.0	43.4	9.1e-34	117.0	43.4	1.9	1	1	1	2	2	2	1	Citrate	transporter
ADH_N	PF08240.12	gi|408403102|ref|YP_006861085.1|	-	1.6e-31	108.4	1.4	2.9e-31	107.6	1.4	1.4	1	0	0	1	1	1	1	Alcohol	dehydrogenase	GroES-like	domain
ADH_zinc_N	PF00107.26	gi|408403102|ref|YP_006861085.1|	-	4.4e-19	68.7	0.8	9.2e-19	67.7	0.5	1.7	1	1	0	1	1	1	1	Zinc-binding	dehydrogenase
2-Hacid_dh_C	PF02826.19	gi|408403102|ref|YP_006861085.1|	-	2.2e-05	23.9	0.2	4.4e-05	22.9	0.2	1.4	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
ADH_zinc_N_2	PF13602.6	gi|408403102|ref|YP_006861085.1|	-	0.00038	21.5	0.1	0.00066	20.7	0.1	1.4	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
AlaDh_PNT_C	PF01262.21	gi|408403102|ref|YP_006861085.1|	-	0.0011	18.3	4.1	0.0021	17.4	4.2	1.4	1	1	0	1	1	1	1	Alanine	dehydrogenase/PNT,	C-terminal	domain
ELFV_dehydrog	PF00208.21	gi|408403102|ref|YP_006861085.1|	-	0.0068	16.2	1.7	0.008	15.9	0.6	1.6	1	1	1	2	2	2	1	Glutamate/Leucine/Phenylalanine/Valine	dehydrogenase
XdhC_C	PF13478.6	gi|408403102|ref|YP_006861085.1|	-	0.058	13.9	0.0	1.8	9.1	0.0	2.1	1	1	1	2	2	2	0	XdhC	Rossmann	domain
DAP_epimerase	PF01678.19	gi|408403102|ref|YP_006861085.1|	-	0.08	13.1	0.0	0.16	12.1	0.0	1.5	1	0	0	1	1	1	0	Diaminopimelate	epimerase
NUDIX	PF00293.28	gi|408403103|ref|YP_006861086.1|	-	2e-16	60.2	0.0	2.6e-16	59.8	0.0	1.1	1	0	0	1	1	1	1	NUDIX	domain
DUF4854	PF16146.5	gi|408403104|ref|YP_006861087.1|	-	0.098	13.0	0.0	0.19	12.1	0.0	1.5	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4854)
TrmB	PF01978.19	gi|408403105|ref|YP_006861088.1|	-	0.0084	16.0	0.6	0.016	15.1	0.6	1.4	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
LexA_DNA_bind	PF01726.16	gi|408403105|ref|YP_006861088.1|	-	0.031	14.0	0.0	0.055	13.2	0.0	1.3	1	0	0	1	1	1	0	LexA	DNA	binding	domain
DUF4181	PF13789.6	gi|408403105|ref|YP_006861088.1|	-	0.076	13.3	1.1	0.19	12.0	1.1	1.7	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4181)
HTH_IclR	PF09339.10	gi|408403105|ref|YP_006861088.1|	-	0.094	12.5	0.0	0.15	11.8	0.0	1.4	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
Ycf4	PF02392.16	gi|408403107|ref|YP_006861090.1|	-	0.073	12.6	2.3	0.15	11.6	2.3	1.5	1	0	0	1	1	1	0	Ycf4
DUF2443	PF10398.9	gi|408403107|ref|YP_006861090.1|	-	0.17	11.9	0.0	0.26	11.4	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2443)
DUF2127	PF09900.9	gi|408403107|ref|YP_006861090.1|	-	3	8.1	18.9	1.6	9.0	8.6	2.1	1	1	0	2	2	2	0	Predicted	membrane	protein	(DUF2127)
UL42	PF17638.2	gi|408403107|ref|YP_006861090.1|	-	5.8	6.9	5.8	0.77	9.7	1.1	1.9	2	0	0	2	2	2	0	HCMV	UL42
tRNA-synt_2	PF00152.20	gi|408403108|ref|YP_006861091.1|	-	2e-82	276.8	0.0	2.3e-82	276.6	0.0	1.0	1	0	0	1	1	1	1	tRNA	synthetases	class	II	(D,	K	and	N)
tRNA_anti-codon	PF01336.25	gi|408403108|ref|YP_006861091.1|	-	2.4e-08	33.9	0.3	5.6e-08	32.6	0.3	1.7	1	0	0	1	1	1	1	OB-fold	nucleic	acid	binding	domain
tRNA-synt_2d	PF01409.20	gi|408403108|ref|YP_006861091.1|	-	0.024	14.1	0.0	1.7	8.1	0.0	2.9	3	0	0	3	3	3	0	tRNA	synthetases	class	II	core	domain	(F)
tRNA_anti-like	PF12869.7	gi|408403108|ref|YP_006861091.1|	-	0.025	14.2	0.0	0.048	13.3	0.0	1.4	1	0	0	1	1	1	0	tRNA_anti-like
Alba	PF01918.21	gi|408403109|ref|YP_006861092.1|	-	0.00012	21.8	0.3	0.0002	21.1	0.3	1.4	1	0	0	1	1	1	1	Alba
S-methyl_trans	PF02574.16	gi|408403110|ref|YP_006861093.1|	-	1.7e-65	221.6	0.0	1.9e-65	221.4	0.0	1.0	1	0	0	1	1	1	1	Homocysteine	S-methyltransferase
PaaX	PF07848.12	gi|408403111|ref|YP_006861094.1|	-	0.0097	16.1	0.2	0.017	15.3	0.2	1.4	1	1	0	1	1	1	1	PaaX-like	protein
DUF4205	PF13898.6	gi|408403111|ref|YP_006861094.1|	-	0.044	12.7	0.0	0.047	12.6	0.0	1.0	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4205)
CdiI_3	PF18616.1	gi|408403111|ref|YP_006861094.1|	-	0.058	13.3	0.0	0.078	12.9	0.0	1.2	1	0	0	1	1	1	0	CDI	immunity	proteins
SnoaL	PF07366.12	gi|408403112|ref|YP_006861095.1|	-	2.2e-30	105.1	0.0	2.6e-30	104.8	0.0	1.1	1	0	0	1	1	1	1	SnoaL-like	polyketide	cyclase
SnoaL_2	PF12680.7	gi|408403112|ref|YP_006861095.1|	-	4.2e-16	59.4	0.1	5.2e-16	59.1	0.1	1.1	1	0	0	1	1	1	1	SnoaL-like	domain
DUF4440	PF14534.6	gi|408403112|ref|YP_006861095.1|	-	0.079	13.4	0.0	0.11	12.9	0.0	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4440)
Pterin_bind	PF00809.22	gi|408403113|ref|YP_006861096.1|	-	8.9e-35	120.5	0.0	2.5e-34	119.0	0.0	1.7	2	0	0	2	2	2	1	Pterin	binding	enzyme
B12-binding_2	PF02607.17	gi|408403113|ref|YP_006861096.1|	-	1.6e-24	86.1	0.6	4.6e-24	84.7	0.6	1.9	1	0	0	1	1	1	1	B12	binding	domain
Met_synt_B12	PF02965.17	gi|408403113|ref|YP_006861096.1|	-	1.9e-24	86.6	0.0	5.2e-24	85.2	0.0	1.8	1	1	0	1	1	1	1	Vitamin	B12	dependent	methionine	synthase,	activation	domain
B12-binding	PF02310.19	gi|408403113|ref|YP_006861096.1|	-	7.8e-18	64.7	0.0	1.7e-17	63.6	0.0	1.6	1	0	0	1	1	1	1	B12	binding	domain
CdhD	PF03599.16	gi|408403113|ref|YP_006861096.1|	-	0.0007	18.4	0.0	0.0013	17.5	0.0	1.4	1	0	0	1	1	1	1	CO	dehydrogenase/acetyl-CoA	synthase	delta	subunit
adh_short	PF00106.25	gi|408403113|ref|YP_006861096.1|	-	0.0022	17.5	0.5	0.01	15.3	0.1	2.1	2	0	0	2	2	2	1	short	chain	dehydrogenase
DUF2922	PF11148.8	gi|408403113|ref|YP_006861096.1|	-	0.12	12.1	0.1	1.8	8.3	0.0	2.5	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2922)
DUF5519	PF17648.1	gi|408403114|ref|YP_006861097.1|	-	1.1e-33	115.6	0.0	1.3e-33	115.4	0.0	1.0	1	0	0	1	1	1	1	Family	of	unknown	function	(DUF5519)
CtaG_Cox11	PF04442.14	gi|408403115|ref|YP_006861098.1|	-	0.013	15.5	0.0	0.022	14.8	0.0	1.3	1	0	0	1	1	1	0	Cytochrome	c	oxidase	assembly	protein	CtaG/Cox11
DUF4307	PF14155.6	gi|408403115|ref|YP_006861098.1|	-	0.02	14.7	1.8	0.077	12.8	0.3	2.2	2	1	0	2	2	2	0	Domain	of	unknown	function	(DUF4307)
Cupredoxin_1	PF13473.6	gi|408403115|ref|YP_006861098.1|	-	0.089	12.9	0.1	0.16	12.1	0.1	1.4	1	0	0	1	1	1	0	Cupredoxin-like	domain
DUF1833	PF08875.11	gi|408403115|ref|YP_006861098.1|	-	0.12	11.9	0.9	0.28	10.7	0.9	1.7	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF1833)
DUF1993	PF09351.10	gi|408403116|ref|YP_006861099.1|	-	0.019	15.1	0.3	0.02	15.0	0.3	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1993)
DUF3829	PF12889.7	gi|408403116|ref|YP_006861099.1|	-	0.025	14.1	2.3	0.031	13.8	2.3	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3829)
Chloroplast_duf	PF14476.6	gi|408403116|ref|YP_006861099.1|	-	0.026	13.5	0.2	0.032	13.2	0.2	1.1	1	0	0	1	1	1	0	Petal	formation-expressed
GxGYxYP_N	PF16216.5	gi|408403116|ref|YP_006861099.1|	-	0.033	14.4	0.1	0.039	14.1	0.1	1.1	1	0	0	1	1	1	0	GxGYxY	sequence	motif	in	domain	of	unknown	function	N-terminal
Phage_lysis	PF03245.13	gi|408403116|ref|YP_006861099.1|	-	0.036	14.2	0.2	0.047	13.8	0.2	1.2	1	0	0	1	1	1	0	Bacteriophage	Rz	lysis	protein
Peptidase_S49_N	PF08496.10	gi|408403116|ref|YP_006861099.1|	-	0.04	14.0	0.7	0.047	13.7	0.7	1.2	1	0	0	1	1	1	0	Peptidase	family	S49	N-terminal
NPV_P10	PF05531.12	gi|408403116|ref|YP_006861099.1|	-	0.055	13.9	0.4	0.1	13.1	0.1	1.6	2	0	0	2	2	2	0	Nucleopolyhedrovirus	P10	protein
HeLo	PF14479.6	gi|408403116|ref|YP_006861099.1|	-	0.084	12.7	0.1	0.096	12.5	0.1	1.1	1	0	0	1	1	1	0	Prion-inhibition	and	propagation
AKNA	PF12443.8	gi|408403116|ref|YP_006861099.1|	-	0.12	13.1	0.9	0.14	12.9	0.5	1.4	1	1	0	1	1	1	0	AT-hook-containing	transcription	factor
LPP	PF04728.13	gi|408403116|ref|YP_006861099.1|	-	0.23	11.9	0.3	0.23	11.9	0.3	2.1	1	1	1	2	2	2	0	Lipoprotein	leucine-zipper
LPP20	PF02169.16	gi|408403116|ref|YP_006861099.1|	-	0.28	11.5	2.9	0.43	10.9	2.9	1.4	1	1	0	1	1	1	0	LPP20	lipoprotein
Omega_Repress	PF07764.11	gi|408403120|ref|YP_006861103.1|	-	0.03	14.9	0.1	0.057	14.0	0.0	1.5	1	1	1	2	2	2	0	Omega	Transcriptional	Repressor
DDE_Tnp_IS240	PF13610.6	gi|408403121|ref|YP_006861104.1|	-	1.6e-17	64.1	0.0	2.8e-17	63.3	0.0	1.4	1	0	0	1	1	1	1	DDE	domain
rve_3	PF13683.6	gi|408403121|ref|YP_006861104.1|	-	1.1e-05	25.2	0.1	3.1e-05	23.7	0.1	1.8	1	1	0	1	1	1	1	Integrase	core	domain
rve	PF00665.26	gi|408403121|ref|YP_006861104.1|	-	0.00018	21.7	0.0	0.00036	20.7	0.0	1.5	1	0	0	1	1	1	1	Integrase	core	domain
SWIM	PF04434.17	gi|408403121|ref|YP_006861104.1|	-	0.0005	19.7	0.3	0.0012	18.5	0.3	1.6	1	0	0	1	1	1	1	SWIM	zinc	finger
Transposase_mut	PF00872.18	gi|408403121|ref|YP_006861104.1|	-	0.012	14.5	0.2	1.9	7.2	0.0	2.1	2	0	0	2	2	2	0	Transposase,	Mutator	family
zf-Dof	PF02701.15	gi|408403121|ref|YP_006861104.1|	-	0.014	15.5	0.2	0.029	14.5	0.2	1.5	1	0	0	1	1	1	0	Dof	domain,	zinc	finger
HTH_28	PF13518.6	gi|408403121|ref|YP_006861104.1|	-	0.029	14.5	0.1	0.13	12.4	0.0	2.0	2	0	0	2	2	2	0	Helix-turn-helix	domain
Zn_Tnp_IS1	PF03811.13	gi|408403121|ref|YP_006861104.1|	-	0.52	10.1	2.6	0.94	9.3	2.6	1.4	1	0	0	1	1	1	0	InsA	N-terminal	domain
Cytidylate_kin	PF02224.18	gi|408403122|ref|YP_006861105.1|	-	0.15	11.8	0.1	0.17	11.6	0.1	1.1	1	0	0	1	1	1	0	Cytidylate	kinase
Saf_2TM	PF18303.1	gi|408403123|ref|YP_006861106.1|	-	0.021	14.4	0.4	0.054	13.1	0.1	1.7	2	0	0	2	2	2	0	SAVED-fused	2TM	effector	domain
ABC_tran	PF00005.27	gi|408403124|ref|YP_006861107.1|	-	3.2e-33	115.2	0.0	5.1e-33	114.5	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|408403124|ref|YP_006861107.1|	-	1.5e-06	28.2	0.2	0.0059	16.5	0.0	2.2	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
RsgA_GTPase	PF03193.16	gi|408403124|ref|YP_006861107.1|	-	6.6e-05	22.9	0.0	0.00012	22.1	0.0	1.4	1	0	0	1	1	1	1	RsgA	GTPase
SMC_N	PF02463.19	gi|408403124|ref|YP_006861107.1|	-	0.0004	19.9	0.7	0.13	11.6	0.1	2.2	2	0	0	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
AAA	PF00004.29	gi|408403124|ref|YP_006861107.1|	-	0.00066	20.1	0.3	0.006	17.0	0.3	2.2	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
Rad17	PF03215.15	gi|408403124|ref|YP_006861107.1|	-	0.0021	18.0	0.0	0.003	17.5	0.0	1.4	1	0	0	1	1	1	1	Rad17	P-loop	domain
RNA_helicase	PF00910.22	gi|408403124|ref|YP_006861107.1|	-	0.0027	18.1	0.0	0.12	12.7	0.0	2.5	2	0	0	2	2	2	1	RNA	helicase
AAA_22	PF13401.6	gi|408403124|ref|YP_006861107.1|	-	0.0061	16.8	0.1	0.012	15.8	0.1	1.8	1	1	0	1	1	1	1	AAA	domain
IstB_IS21	PF01695.17	gi|408403124|ref|YP_006861107.1|	-	0.0073	16.1	0.4	0.035	13.8	0.0	2.0	2	1	0	2	2	2	1	IstB-like	ATP	binding	protein
AAA_28	PF13521.6	gi|408403124|ref|YP_006861107.1|	-	0.016	15.5	0.1	0.024	14.9	0.1	1.6	1	1	0	1	1	1	0	AAA	domain
AAA_15	PF13175.6	gi|408403124|ref|YP_006861107.1|	-	0.016	14.9	0.0	0.023	14.4	0.0	1.3	1	0	0	1	1	1	0	AAA	ATPase	domain
AAA_23	PF13476.6	gi|408403124|ref|YP_006861107.1|	-	0.022	15.3	0.4	0.041	14.4	0.4	1.4	1	0	0	1	1	1	0	AAA	domain
AAA_18	PF13238.6	gi|408403124|ref|YP_006861107.1|	-	0.024	15.2	0.1	0.063	13.8	0.1	1.7	1	1	0	1	1	1	0	AAA	domain
AAA_16	PF13191.6	gi|408403124|ref|YP_006861107.1|	-	0.025	15.0	0.0	0.054	13.9	0.0	1.6	2	0	0	2	2	1	0	AAA	ATPase	domain
AAA_5	PF07728.14	gi|408403124|ref|YP_006861107.1|	-	0.027	14.5	0.0	0.064	13.2	0.0	1.6	1	0	0	1	1	1	0	AAA	domain	(dynein-related	subfamily)
ABC_ATPase	PF09818.9	gi|408403124|ref|YP_006861107.1|	-	0.033	13.0	0.5	0.12	11.2	0.0	1.8	2	0	0	2	2	2	0	Predicted	ATPase	of	the	ABC	class
AAA_30	PF13604.6	gi|408403124|ref|YP_006861107.1|	-	0.035	13.8	0.0	0.08	12.6	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
NACHT	PF05729.12	gi|408403124|ref|YP_006861107.1|	-	0.037	14.0	0.0	0.065	13.1	0.0	1.4	1	0	0	1	1	1	0	NACHT	domain
AAA_24	PF13479.6	gi|408403124|ref|YP_006861107.1|	-	0.052	13.3	0.0	0.082	12.6	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
PhoH	PF02562.16	gi|408403124|ref|YP_006861107.1|	-	0.057	12.9	0.1	0.56	9.6	0.0	2.2	2	0	0	2	2	2	0	PhoH-like	protein
AAA_29	PF13555.6	gi|408403124|ref|YP_006861107.1|	-	0.07	12.9	0.1	0.15	11.8	0.1	1.5	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
AAA_25	PF13481.6	gi|408403124|ref|YP_006861107.1|	-	0.074	12.6	0.0	0.12	11.9	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
AAA_33	PF13671.6	gi|408403124|ref|YP_006861107.1|	-	0.087	13.0	0.2	0.12	12.6	0.2	1.5	1	1	0	1	1	1	0	AAA	domain
AAA_7	PF12775.7	gi|408403124|ref|YP_006861107.1|	-	0.098	12.2	0.0	0.18	11.3	0.0	1.4	1	0	0	1	1	1	0	P-loop	containing	dynein	motor	region
MMR_HSR1	PF01926.23	gi|408403124|ref|YP_006861107.1|	-	0.098	12.7	0.0	0.33	11.0	0.0	1.9	2	0	0	2	2	2	0	50S	ribosome-binding	GTPase
TsaE	PF02367.17	gi|408403124|ref|YP_006861107.1|	-	0.1	12.6	0.1	0.19	11.8	0.1	1.4	1	0	0	1	1	1	0	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
T2SSE	PF00437.20	gi|408403124|ref|YP_006861107.1|	-	0.11	11.5	0.0	0.18	10.9	0.0	1.3	1	0	0	1	1	1	0	Type	II/IV	secretion	system	protein
MTHFR	PF02219.17	gi|408403125|ref|YP_006861108.1|	-	0.0011	18.3	0.0	0.0017	17.7	0.0	1.3	1	0	0	1	1	1	1	Methylenetetrahydrofolate	reductase
NUDIX	PF00293.28	gi|408403126|ref|YP_006861109.1|	-	1.1e-09	38.4	0.0	1.4e-09	38.1	0.0	1.2	1	0	0	1	1	1	1	NUDIX	domain
Phage_integrase	PF00589.22	gi|408403127|ref|YP_006861110.1|	-	4.4e-07	29.9	0.0	3e-06	27.1	0.0	2.4	1	1	0	1	1	1	1	Phage	integrase	family
Phage_int_SAM_4	PF13495.6	gi|408403127|ref|YP_006861110.1|	-	0.001	19.5	0.9	0.057	13.9	0.2	3.3	1	1	1	2	2	2	1	Phage	integrase,	N-terminal	SAM-like	domain
DZR	PF12773.7	gi|408403127|ref|YP_006861110.1|	-	0.0086	16.1	0.6	0.021	14.8	0.6	1.6	1	0	0	1	1	1	1	Double	zinc	ribbon
LPD11	PF18824.1	gi|408403127|ref|YP_006861110.1|	-	0.022	14.8	0.2	0.056	13.5	0.2	1.6	1	0	0	1	1	1	0	Large	polyvalent	protein-associated	domain	11
Stc1	PF12898.7	gi|408403127|ref|YP_006861110.1|	-	0.2	12.3	0.3	0.2	12.3	0.3	2.0	2	0	0	2	2	2	0	Stc1	domain
DUF2614	PF11023.8	gi|408403127|ref|YP_006861110.1|	-	0.21	11.7	0.5	0.46	10.6	0.5	1.5	1	0	0	1	1	1	0	Zinc-ribbon	containing	domain
zf-ribbon_3	PF13248.6	gi|408403127|ref|YP_006861110.1|	-	0.43	10.1	6.5	0.048	13.1	1.5	2.0	2	0	0	2	2	2	0	zinc-ribbon	domain
Ndc80_HEC	PF03801.13	gi|408403127|ref|YP_006861110.1|	-	2	8.0	6.6	0.28	10.8	0.1	2.6	3	0	0	3	3	3	0	HEC/Ndc80p	family
SieB	PF14163.6	gi|408403127|ref|YP_006861110.1|	-	2.1	7.8	4.2	0.51	9.8	0.2	2.0	2	1	0	2	2	2	0	Super-infection	exclusion	protein	B
zf-RanBP	PF00641.18	gi|408403127|ref|YP_006861110.1|	-	2.5	7.5	6.3	1.4	8.3	3.5	2.0	2	0	0	2	2	2	0	Zn-finger	in	Ran	binding	protein	and	others
GILT	PF03227.16	gi|408403128|ref|YP_006861111.1|	-	0.048	13.9	0.0	0.065	13.5	0.0	1.2	1	0	0	1	1	1	0	Gamma	interferon	inducible	lysosomal	thiol	reductase	(GILT)
DUF4570	PF15134.6	gi|408403128|ref|YP_006861111.1|	-	0.1	12.7	0.3	2.9	8.0	0.0	2.2	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4570)
Lactamase_B_2	PF12706.7	gi|408403130|ref|YP_006861113.1|	-	3.2e-10	39.9	1.7	5.3e-09	35.9	0.4	2.8	2	1	0	2	2	2	1	Beta-lactamase	superfamily	domain
RMMBL	PF07521.12	gi|408403130|ref|YP_006861113.1|	-	0.00013	21.8	0.4	0.00034	20.5	0.4	1.7	1	0	0	1	1	1	1	Zn-dependent	metallo-hydrolase	RNA	specificity	domain
Lactamase_B_3	PF13483.6	gi|408403130|ref|YP_006861113.1|	-	0.012	15.5	0.0	0.025	14.5	0.0	1.5	1	0	0	1	1	1	0	Beta-lactamase	superfamily	domain
Lactamase_B	PF00753.27	gi|408403130|ref|YP_006861113.1|	-	0.21	11.6	7.6	0.41	10.6	5.5	2.5	2	1	0	2	2	2	0	Metallo-beta-lactamase	superfamily
DUF2004	PF09406.10	gi|408403131|ref|YP_006861114.1|	-	0.071	13.4	0.1	1.1	9.6	0.0	2.6	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2004)
HSDR_N_2	PF13588.6	gi|408403132|ref|YP_006861115.1|	-	0.016	15.2	0.0	0.036	14.1	0.0	1.6	1	0	0	1	1	1	0	Type	I	restriction	enzyme	R	protein	N	terminus	(HSDR_N)
DUF234	PF03008.14	gi|408403132|ref|YP_006861115.1|	-	0.017	15.6	0.8	2.1	8.9	0.0	2.8	3	0	0	3	3	3	0	Archaea	bacterial	proteins	of	unknown	function
Glycos_transf_1	PF00534.20	gi|408403133|ref|YP_006861116.1|	-	1.9e-18	66.6	0.0	2.9e-18	66.0	0.0	1.2	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.6	gi|408403133|ref|YP_006861116.1|	-	2e-08	34.7	0.0	3.6e-08	33.9	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
ALG11_N	PF15924.5	gi|408403133|ref|YP_006861116.1|	-	0.068	13.2	0.6	1.4	8.9	0.8	2.5	2	1	0	2	2	2	0	ALG11	mannosyltransferase	N-terminus
DUF4179	PF13786.6	gi|408403135|ref|YP_006861118.1|	-	0.024	15.1	1.6	0.03	14.8	1.6	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4179)
DMRL_synthase	PF00885.19	gi|408403135|ref|YP_006861118.1|	-	0.045	13.6	0.2	0.054	13.3	0.2	1.0	1	0	0	1	1	1	0	6,7-dimethyl-8-ribityllumazine	synthase
UPF0086	PF01868.16	gi|408403137|ref|YP_006861120.1|	-	0.0062	16.4	0.0	1.2	9.2	0.0	2.2	2	0	0	2	2	2	2	Domain	of	unknown	function	UPF0086
CBS	PF00571.28	gi|408403138|ref|YP_006861121.1|	-	1.8e-23	82.7	7.0	1.1e-14	54.6	0.6	3.2	3	0	0	3	3	3	3	CBS	domain
GAGA	PF09237.11	gi|408403138|ref|YP_006861121.1|	-	2.5e-05	24.0	0.2	4.2e-05	23.3	0.2	1.3	1	0	0	1	1	1	1	GAGA	factor
zf-Di19	PF05605.12	gi|408403138|ref|YP_006861121.1|	-	0.0067	16.7	0.1	0.011	16.0	0.1	1.3	1	0	0	1	1	1	1	Drought	induced	19	protein	(Di19),	zinc-binding
TOBE_2	PF08402.10	gi|408403139|ref|YP_006861122.1|	-	0.0046	17.1	0.0	0.0049	17.0	0.0	1.1	1	0	0	1	1	1	1	TOBE	domain
GatD_N	PF18195.1	gi|408403139|ref|YP_006861122.1|	-	0.029	13.7	0.0	0.044	13.1	0.0	1.3	1	1	0	1	1	1	0	GatD	N-terminal	domain
Tudor_RapA	PF18337.1	gi|408403139|ref|YP_006861122.1|	-	0.077	13.2	0.3	0.12	12.6	0.3	1.4	1	1	0	1	1	1	0	RapA	N-terminal	Tudor	like	domain
YajC	PF02699.15	gi|408403139|ref|YP_006861122.1|	-	0.093	12.6	0.0	0.095	12.6	0.0	1.0	1	0	0	1	1	1	0	Preprotein	translocase	subunit
CBS	PF00571.28	gi|408403141|ref|YP_006861124.1|	-	2.4e-21	75.9	9.0	1.2e-10	41.7	0.8	2.4	1	1	1	2	2	2	2	CBS	domain
Arabinose_Isome	PF02610.15	gi|408403142|ref|YP_006861125.1|	-	0.055	12.7	0.0	0.055	12.7	0.0	1.0	1	0	0	1	1	1	0	L-arabinose	isomerase
Hemagglutinin	PF00509.18	gi|408403143|ref|YP_006861126.1|	-	0.085	11.2	0.0	0.085	11.2	0.0	1.1	1	0	0	1	1	1	0	Haemagglutinin
HTH_45	PF14947.6	gi|408403144|ref|YP_006861127.1|	-	7.9e-17	61.0	0.2	9.5e-17	60.8	0.2	1.1	1	0	0	1	1	1	1	Winged	helix-turn-helix
DUF4364	PF14277.6	gi|408403144|ref|YP_006861127.1|	-	0.0072	16.1	0.3	0.012	15.4	0.2	1.6	1	1	1	2	2	2	1	Domain	of	unknown	function	(DUF4364)
HTH_45	PF14947.6	gi|408403146|ref|YP_006861129.1|	-	6.1e-05	22.9	0.1	8.7e-05	22.4	0.1	1.3	1	0	0	1	1	1	1	Winged	helix-turn-helix
DUF505	PF04458.12	gi|408403146|ref|YP_006861129.1|	-	0.002	16.6	0.1	0.002	16.6	0.1	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF505)
HTH_12	PF08461.10	gi|408403146|ref|YP_006861129.1|	-	0.0021	18.0	0.6	0.0025	17.7	0.6	1.4	1	1	0	1	1	1	1	Ribonuclease	R	winged-helix	domain
HTH_DeoR	PF08220.12	gi|408403146|ref|YP_006861129.1|	-	0.0085	15.8	0.0	0.012	15.3	0.0	1.4	1	0	0	1	1	1	1	DeoR-like	helix-turn-helix	domain
RuvB_C	PF05491.13	gi|408403146|ref|YP_006861129.1|	-	0.011	15.5	0.2	0.021	14.7	0.2	1.5	1	1	0	1	1	1	0	RuvB	C-terminal	winged	helix	domain
Ribosomal_S19e	PF01090.19	gi|408403146|ref|YP_006861129.1|	-	0.013	15.2	0.1	0.015	15.0	0.1	1.2	1	0	0	1	1	1	0	Ribosomal	protein	S19e
Cpn60_TCP1	PF00118.24	gi|408403147|ref|YP_006861130.1|	-	3.4e-178	593.3	18.3	3.9e-178	593.1	18.3	1.0	1	0	0	1	1	1	1	TCP-1/cpn60	chaperonin	family
HTH_5	PF01022.20	gi|408403148|ref|YP_006861131.1|	-	9e-13	47.9	0.1	1.2e-11	44.2	0.0	2.5	2	0	0	2	2	2	1	Bacterial	regulatory	protein,	arsR	family
HTH_20	PF12840.7	gi|408403148|ref|YP_006861131.1|	-	3.3e-12	46.3	0.0	9.9e-12	44.7	0.0	1.8	2	0	0	2	2	1	1	Helix-turn-helix	domain
HTH_24	PF13412.6	gi|408403148|ref|YP_006861131.1|	-	1.3e-06	27.9	0.3	7.6e-06	25.4	0.3	2.2	1	1	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
MarR	PF01047.22	gi|408403148|ref|YP_006861131.1|	-	3.4e-06	26.9	0.1	0.0051	16.7	0.0	2.7	3	0	0	3	3	2	2	MarR	family
ArsR	PF09824.9	gi|408403148|ref|YP_006861131.1|	-	5.3e-06	26.1	0.2	0.00027	20.6	0.0	2.4	1	1	0	2	2	2	1	ArsR	transcriptional	regulator
PadR	PF03551.14	gi|408403148|ref|YP_006861131.1|	-	8.2e-06	25.7	0.8	0.00025	20.9	0.1	3.2	2	1	0	2	2	2	1	Transcriptional	regulator	PadR-like	family
MarR_2	PF12802.7	gi|408403148|ref|YP_006861131.1|	-	1.9e-05	24.5	0.0	0.007	16.2	0.0	2.4	2	0	0	2	2	2	1	MarR	family
TrmB	PF01978.19	gi|408403148|ref|YP_006861131.1|	-	7.4e-05	22.6	0.1	0.0025	17.7	0.0	2.7	2	1	1	3	3	3	1	Sugar-specific	transcriptional	regulator	TrmB
DprA_WH	PF17782.1	gi|408403148|ref|YP_006861131.1|	-	0.0001	22.3	0.0	0.0016	18.5	0.0	2.6	2	1	0	2	2	2	1	DprA	winged	helix	domain
HTH_11	PF08279.12	gi|408403148|ref|YP_006861131.1|	-	0.00053	19.9	0.0	0.0022	17.9	0.0	2.1	1	0	0	1	1	1	1	HTH	domain
HTH_12	PF08461.10	gi|408403148|ref|YP_006861131.1|	-	0.0051	16.7	0.1	0.041	13.8	0.0	2.6	2	1	0	2	2	2	1	Ribonuclease	R	winged-helix	domain
CdvA	PF18822.1	gi|408403148|ref|YP_006861131.1|	-	0.0056	16.5	0.8	0.0056	16.5	0.8	1.8	2	0	0	2	2	2	1	CdvA-like	coiled-coil	domain
APG6_N	PF17675.1	gi|408403148|ref|YP_006861131.1|	-	0.0065	17.0	1.2	0.013	16.0	1.2	1.6	1	0	0	1	1	1	1	Apg6	coiled-coil	region
HxlR	PF01638.17	gi|408403148|ref|YP_006861131.1|	-	0.011	15.6	0.0	0.035	13.9	0.0	1.8	1	0	0	1	1	1	0	HxlR-like	helix-turn-helix
HTH_Crp_2	PF13545.6	gi|408403148|ref|YP_006861131.1|	-	0.017	15.1	0.0	0.054	13.5	0.0	1.9	2	0	0	2	2	1	0	Crp-like	helix-turn-helix	domain
Lzipper-MIP1	PF14389.6	gi|408403148|ref|YP_006861131.1|	-	0.02	15.2	2.5	0.15	12.3	0.7	2.5	2	0	0	2	2	2	0	Leucine-zipper	of	ternary	complex	factor	MIP1
SKA2	PF16740.5	gi|408403148|ref|YP_006861131.1|	-	0.022	14.5	0.3	0.051	13.4	0.3	1.6	1	0	0	1	1	1	0	Spindle	and	kinetochore-associated	protein	2
TFIIE_alpha	PF02002.17	gi|408403148|ref|YP_006861131.1|	-	0.025	14.5	1.8	0.035	13.9	0.1	2.1	2	1	0	2	2	2	0	TFIIE	alpha	subunit
B-block_TFIIIC	PF04182.12	gi|408403148|ref|YP_006861131.1|	-	0.03	14.5	0.0	2.6	8.3	0.0	2.5	2	0	0	2	2	2	0	B-block	binding	subunit	of	TFIIIC
HTH_AsnC-type	PF13404.6	gi|408403148|ref|YP_006861131.1|	-	0.051	13.4	0.2	1.9	8.4	0.1	2.8	2	1	0	2	2	2	0	AsnC-type	helix-turn-helix	domain
HTH_36	PF13730.6	gi|408403148|ref|YP_006861131.1|	-	0.071	13.1	0.0	0.75	9.8	0.0	2.5	2	0	0	2	2	2	0	Helix-turn-helix	domain
HTH_34	PF13601.6	gi|408403148|ref|YP_006861131.1|	-	0.072	13.3	0.0	0.16	12.2	0.0	1.6	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
HTH_CodY	PF08222.11	gi|408403148|ref|YP_006861131.1|	-	0.081	12.5	0.0	0.24	11.0	0.0	1.8	1	0	0	1	1	1	0	CodY	helix-turn-helix	domain
DUF2250	PF10007.9	gi|408403148|ref|YP_006861131.1|	-	0.095	12.8	0.2	0.095	12.8	0.2	2.4	3	1	0	3	3	1	0	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
CK2S	PF15011.6	gi|408403148|ref|YP_006861131.1|	-	0.1	12.5	1.1	0.7	9.8	0.5	2.1	1	1	1	2	2	2	0	Casein	Kinase	2	substrate
HTH_IclR	PF09339.10	gi|408403148|ref|YP_006861131.1|	-	0.13	12.1	0.0	0.4	10.5	0.0	1.9	2	0	0	2	2	2	0	IclR	helix-turn-helix	domain
IF2_N	PF04760.15	gi|408403148|ref|YP_006861131.1|	-	0.14	12.0	2.5	1.7	8.5	0.0	3.1	3	0	0	3	3	3	0	Translation	initiation	factor	IF-2,	N-terminal	region
Hemerythrin	PF01814.23	gi|408403149|ref|YP_006861132.1|	-	2.1e-15	57.5	2.2	9.1e-13	49.0	0.5	2.3	1	1	1	2	2	2	2	Hemerythrin	HHE	cation	binding	domain
SepF	PF04472.12	gi|408403149|ref|YP_006861132.1|	-	0.035	14.4	0.2	0.097	13.0	0.1	1.9	2	0	0	2	2	2	0	Cell	division	protein	SepF
DUF4477	PF14780.6	gi|408403149|ref|YP_006861132.1|	-	0.05	13.2	0.1	0.73	9.4	0.0	2.0	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4477)
HTH_50	PF18024.1	gi|408403149|ref|YP_006861132.1|	-	0.064	12.9	0.1	2.4	7.9	0.0	2.5	2	0	0	2	2	2	0	Helix-turn-helix	domain
RAI16-like	PF10257.9	gi|408403149|ref|YP_006861132.1|	-	0.11	11.4	0.0	0.13	11.1	0.0	1.1	1	0	0	1	1	1	0	Retinoic	acid	induced	16-like	protein
HSP20	PF00011.21	gi|408403150|ref|YP_006861133.1|	-	2.5e-09	37.2	1.6	6.4e-08	32.7	1.6	2.2	1	1	0	1	1	1	1	Hsp20/alpha	crystallin	family
PIH1_CS	PF18201.1	gi|408403150|ref|YP_006861133.1|	-	2.9e-07	30.8	0.1	4.3e-07	30.3	0.1	1.2	1	0	0	1	1	1	1	PIH1	CS-like	domain
ArsA_HSP20	PF17886.1	gi|408403150|ref|YP_006861133.1|	-	0.00065	19.2	0.0	0.0016	17.9	0.0	1.7	1	1	0	1	1	1	1	HSP20-like	domain	found	in	ArsA
CS	PF04969.16	gi|408403150|ref|YP_006861133.1|	-	0.0095	16.9	0.8	0.028	15.5	0.8	1.8	1	1	0	1	1	1	1	CS	domain
DUF1735	PF08522.10	gi|408403150|ref|YP_006861133.1|	-	0.046	14.3	1.2	0.15	12.7	1.2	1.8	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF1735)
GvpH	PF05455.11	gi|408403150|ref|YP_006861133.1|	-	0.056	13.5	0.0	0.077	13.1	0.0	1.3	1	0	0	1	1	1	0	GvpH
DUF4139	PF13598.6	gi|408403150|ref|YP_006861133.1|	-	0.087	12.5	0.3	0.15	11.8	0.3	1.4	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4139)
AAA	PF00004.29	gi|408403151|ref|YP_006861134.1|	-	4.5e-100	331.3	0.0	8.9e-49	165.3	0.0	2.5	2	0	0	2	2	2	2	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_lid_3	PF17862.1	gi|408403151|ref|YP_006861134.1|	-	9.2e-30	102.2	2.7	2.2e-14	53.0	0.1	2.7	2	1	0	2	2	2	2	AAA+	lid	domain
CDC48_N	PF02359.18	gi|408403151|ref|YP_006861134.1|	-	1.9e-27	95.3	0.0	6.7e-27	93.5	0.0	2.0	1	0	0	1	1	1	1	Cell	division	protein	48	(CDC48),	N-terminal	domain
AAA_2	PF07724.14	gi|408403151|ref|YP_006861134.1|	-	3.2e-16	59.9	0.0	1.3e-07	31.9	0.0	2.6	2	0	0	2	2	2	2	AAA	domain	(Cdc48	subfamily)
RuvB_N	PF05496.12	gi|408403151|ref|YP_006861134.1|	-	7.5e-15	55.0	0.0	3.2e-08	33.5	0.0	2.8	3	0	0	3	3	2	2	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
AAA_16	PF13191.6	gi|408403151|ref|YP_006861134.1|	-	7.1e-14	52.5	0.1	1.1e-05	25.9	0.0	3.7	2	2	1	3	3	3	2	AAA	ATPase	domain
AAA_22	PF13401.6	gi|408403151|ref|YP_006861134.1|	-	2.5e-11	44.0	0.9	0.0087	16.3	0.0	3.8	2	2	1	3	3	3	2	AAA	domain
CDC48_2	PF02933.17	gi|408403151|ref|YP_006861134.1|	-	9.8e-11	41.3	0.1	6.8e-10	38.6	0.0	2.3	2	0	0	2	2	2	1	Cell	division	protein	48	(CDC48),	domain	2
TIP49	PF06068.13	gi|408403151|ref|YP_006861134.1|	-	1.8e-10	40.6	0.1	0.00099	18.4	0.0	3.2	3	0	0	3	3	3	2	TIP49	P-loop	domain
AAA_5	PF07728.14	gi|408403151|ref|YP_006861134.1|	-	3.5e-10	40.0	0.5	0.002	18.1	0.1	4.0	2	2	0	2	2	2	2	AAA	domain	(dynein-related	subfamily)
AAA_33	PF13671.6	gi|408403151|ref|YP_006861134.1|	-	5.8e-09	36.2	0.0	0.00026	21.2	0.0	2.7	2	1	0	2	2	2	2	AAA	domain
IstB_IS21	PF01695.17	gi|408403151|ref|YP_006861134.1|	-	1.5e-07	31.3	0.1	0.022	14.5	0.1	2.4	2	0	0	2	2	2	2	IstB-like	ATP	binding	protein
Mg_chelatase	PF01078.21	gi|408403151|ref|YP_006861134.1|	-	1.6e-07	31.0	0.6	0.0068	15.8	0.1	2.5	2	0	0	2	2	2	2	Magnesium	chelatase,	subunit	ChlI
AAA_24	PF13479.6	gi|408403151|ref|YP_006861134.1|	-	3.3e-07	30.3	0.0	0.026	14.2	0.0	2.4	2	0	0	2	2	2	2	AAA	domain
AAA_18	PF13238.6	gi|408403151|ref|YP_006861134.1|	-	4.9e-07	30.3	0.0	0.046	14.3	0.0	2.6	2	0	0	2	2	2	2	AAA	domain
AAA_14	PF13173.6	gi|408403151|ref|YP_006861134.1|	-	7.5e-07	29.2	0.0	0.0053	16.8	0.0	2.5	2	0	0	2	2	2	2	AAA	domain
AAA_25	PF13481.6	gi|408403151|ref|YP_006861134.1|	-	1.1e-06	28.4	3.3	0.12	12.0	0.2	3.9	3	1	0	3	3	3	1	AAA	domain
AAA_28	PF13521.6	gi|408403151|ref|YP_006861134.1|	-	2.6e-06	27.8	0.0	0.03	14.5	0.0	2.5	2	0	0	2	2	2	2	AAA	domain
AAA_7	PF12775.7	gi|408403151|ref|YP_006861134.1|	-	3.2e-06	26.8	0.0	0.12	11.9	0.0	2.7	3	0	0	3	3	2	2	P-loop	containing	dynein	motor	region
RNA_helicase	PF00910.22	gi|408403151|ref|YP_006861134.1|	-	3.3e-06	27.4	0.0	0.12	12.8	0.0	2.8	2	1	0	2	2	2	2	RNA	helicase
Sigma54_activat	PF00158.26	gi|408403151|ref|YP_006861134.1|	-	4.9e-06	26.4	0.0	0.21	11.3	0.0	3.2	3	0	0	3	3	3	2	Sigma-54	interaction	domain
Zeta_toxin	PF06414.12	gi|408403151|ref|YP_006861134.1|	-	1.4e-05	24.5	0.2	0.15	11.4	0.0	2.4	2	0	0	2	2	2	2	Zeta	toxin
AAA_3	PF07726.11	gi|408403151|ref|YP_006861134.1|	-	1.8e-05	24.6	0.0	0.27	11.1	0.0	2.8	2	0	0	2	2	2	2	ATPase	family	associated	with	various	cellular	activities	(AAA)
TsaE	PF02367.17	gi|408403151|ref|YP_006861134.1|	-	3.6e-05	23.7	0.0	0.44	10.6	0.0	2.6	2	1	0	2	2	2	2	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
Parvo_NS1	PF01057.17	gi|408403151|ref|YP_006861134.1|	-	6.9e-05	22.1	0.1	0.075	12.1	0.0	2.2	2	0	0	2	2	2	2	Parvovirus	non-structural	protein	NS1
AAA_11	PF13086.6	gi|408403151|ref|YP_006861134.1|	-	6.9e-05	22.8	0.0	0.15	11.8	0.0	2.5	2	0	0	2	2	2	2	AAA	domain
AAA_30	PF13604.6	gi|408403151|ref|YP_006861134.1|	-	8.9e-05	22.3	0.4	0.5	10.1	0.0	2.6	2	0	0	2	2	2	2	AAA	domain
DUF2075	PF09848.9	gi|408403151|ref|YP_006861134.1|	-	9.2e-05	21.8	0.4	0.17	11.1	0.0	3.1	3	0	0	3	3	3	1	Uncharacterized	conserved	protein	(DUF2075)
NACHT	PF05729.12	gi|408403151|ref|YP_006861134.1|	-	9.5e-05	22.4	0.4	0.42	10.5	0.0	3.0	3	0	0	3	3	3	2	NACHT	domain
ATPase	PF06745.13	gi|408403151|ref|YP_006861134.1|	-	0.00011	21.6	0.7	0.37	10.1	0.0	3.2	3	0	0	3	3	3	2	KaiC
Bac_DnaA	PF00308.18	gi|408403151|ref|YP_006861134.1|	-	0.00016	21.6	0.0	0.15	11.9	0.0	3.4	3	1	1	4	4	3	1	Bacterial	dnaA	protein
PhoH	PF02562.16	gi|408403151|ref|YP_006861134.1|	-	0.00017	21.1	0.4	0.46	9.9	0.1	2.6	2	0	0	2	2	2	2	PhoH-like	protein
ABC_tran	PF00005.27	gi|408403151|ref|YP_006861134.1|	-	0.00039	20.9	0.0	1.3	9.5	0.0	2.7	2	0	0	2	2	2	2	ABC	transporter
NB-ARC	PF00931.22	gi|408403151|ref|YP_006861134.1|	-	0.00064	19.0	0.1	0.51	9.5	0.1	2.6	2	0	0	2	2	2	1	NB-ARC	domain
DUF815	PF05673.13	gi|408403151|ref|YP_006861134.1|	-	0.00089	18.5	0.0	0.8	8.8	0.0	2.4	2	0	0	2	2	2	2	Protein	of	unknown	function	(DUF815)
UFD1	PF03152.14	gi|408403151|ref|YP_006861134.1|	-	0.00089	18.8	0.0	0.018	14.5	0.0	2.3	1	1	0	2	2	2	1	Ubiquitin	fusion	degradation	protein	UFD1
CPT	PF07931.12	gi|408403151|ref|YP_006861134.1|	-	0.0011	18.9	0.1	2.6	7.9	0.0	3.2	3	1	0	3	3	3	1	Chloramphenicol	phosphotransferase-like	protein
AAA_17	PF13207.6	gi|408403151|ref|YP_006861134.1|	-	0.0011	19.4	0.1	2.5	8.5	0.0	3.0	2	1	0	2	2	2	1	AAA	domain
ATPase_2	PF01637.18	gi|408403151|ref|YP_006861134.1|	-	0.0013	18.6	0.0	0.76	9.6	0.0	2.8	2	1	0	3	3	2	1	ATPase	domain	predominantly	from	Archaea
TniB	PF05621.11	gi|408403151|ref|YP_006861134.1|	-	0.002	17.6	0.0	0.42	10.0	0.0	2.8	3	0	0	3	3	3	1	Bacterial	TniB	protein
AAA_19	PF13245.6	gi|408403151|ref|YP_006861134.1|	-	0.0021	18.4	2.5	0.97	9.8	0.1	2.8	3	0	0	3	3	2	1	AAA	domain
NTPase_1	PF03266.15	gi|408403151|ref|YP_006861134.1|	-	0.0032	17.4	3.2	4	7.3	0.1	4.1	3	1	1	4	4	4	0	NTPase
ResIII	PF04851.15	gi|408403151|ref|YP_006861134.1|	-	0.0042	17.1	0.0	3.2	7.7	0.0	2.7	3	0	0	3	3	2	0	Type	III	restriction	enzyme,	res	subunit
AFG1_ATPase	PF03969.16	gi|408403151|ref|YP_006861134.1|	-	0.0061	15.5	0.0	1.4	7.7	0.0	2.2	2	0	0	2	2	2	1	AFG1-like	ATPase
Vps4_C	PF09336.10	gi|408403151|ref|YP_006861134.1|	-	0.0095	15.9	0.2	0.14	12.1	0.1	2.6	2	0	0	2	2	2	1	Vps4	C	terminal	oligomerisation	domain
Sigma54_activ_2	PF14532.6	gi|408403151|ref|YP_006861134.1|	-	0.0095	16.1	0.0	6.7	6.8	0.0	2.7	2	0	0	2	2	2	0	Sigma-54	interaction	domain
Cytidylate_kin	PF02224.18	gi|408403151|ref|YP_006861134.1|	-	0.011	15.5	0.3	4.9	6.8	0.0	2.5	2	0	0	2	2	2	0	Cytidylate	kinase
T2SSE	PF00437.20	gi|408403151|ref|YP_006861134.1|	-	0.012	14.7	0.0	3.7	6.5	0.0	2.5	2	0	0	2	2	2	0	Type	II/IV	secretion	system	protein
Hydin_ADK	PF17213.3	gi|408403151|ref|YP_006861134.1|	-	0.013	15.8	0.3	8.1	6.7	0.1	2.5	2	0	0	2	2	2	0	Hydin	Adenylate	kinase-like	domain
Zot	PF05707.12	gi|408403151|ref|YP_006861134.1|	-	0.019	14.6	0.0	0.31	10.7	0.0	2.6	2	0	0	2	2	2	0	Zonular	occludens	toxin	(Zot)
MCM	PF00493.23	gi|408403151|ref|YP_006861134.1|	-	0.022	13.9	0.0	2.8	7.0	0.0	2.6	3	0	0	3	3	2	0	MCM	P-loop	domain
Torsin	PF06309.11	gi|408403151|ref|YP_006861134.1|	-	0.023	14.8	0.2	3.7	7.7	0.0	3.0	3	0	0	3	3	3	0	Torsin
AAA_29	PF13555.6	gi|408403151|ref|YP_006861134.1|	-	0.037	13.8	0.0	7.8	6.3	0.0	2.6	2	0	0	2	2	2	0	P-loop	containing	region	of	AAA	domain
Viral_helicase1	PF01443.18	gi|408403151|ref|YP_006861134.1|	-	0.041	13.6	0.0	3.7	7.2	0.0	2.4	2	0	0	2	2	2	0	Viral	(Superfamily	1)	RNA	helicase
Cytidylate_kin2	PF13189.6	gi|408403151|ref|YP_006861134.1|	-	0.051	13.7	0.0	13	5.8	0.0	2.6	2	0	0	2	2	2	0	Cytidylate	kinase-like	family
Guanylate_kin	PF00625.21	gi|408403151|ref|YP_006861134.1|	-	0.069	12.8	0.2	12	5.6	0.0	3.5	2	2	1	3	3	3	0	Guanylate	kinase
ATP-synt_ab	PF00006.25	gi|408403151|ref|YP_006861134.1|	-	0.1	12.3	0.0	5.5	6.6	0.0	2.5	2	0	0	2	2	2	0	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
SKI	PF01202.22	gi|408403151|ref|YP_006861134.1|	-	0.16	12.1	0.1	22	5.1	0.0	2.7	2	0	0	2	2	2	0	Shikimate	kinase
zf-C4H2	PF10146.9	gi|408403152|ref|YP_006861135.1|	-	0.52	10.6	4.9	0.56	10.5	4.9	1.1	1	0	0	1	1	1	0	Zinc	finger-containing	protein
Lon_C	PF05362.13	gi|408403153|ref|YP_006861136.1|	-	6.8e-10	38.8	1.5	1.2e-09	38.0	1.5	1.5	1	1	0	1	1	1	1	Lon	protease	(S16)	C-terminal	proteolytic	domain
AKNA	PF12443.8	gi|408403153|ref|YP_006861136.1|	-	0.0011	19.6	0.1	0.0019	18.8	0.1	1.4	1	0	0	1	1	1	1	AT-hook-containing	transcription	factor
CASP_C	PF08172.12	gi|408403153|ref|YP_006861136.1|	-	0.0032	16.9	0.5	0.0045	16.4	0.5	1.3	1	0	0	1	1	1	1	CASP	C	terminal
TMF_DNA_bd	PF12329.8	gi|408403153|ref|YP_006861136.1|	-	0.036	14.1	3.1	0.088	12.8	3.1	1.6	1	0	0	1	1	1	0	TATA	element	modulatory	factor	1	DNA	binding
CENP-K	PF11802.8	gi|408403153|ref|YP_006861136.1|	-	0.078	12.5	0.1	0.13	11.9	0.1	1.3	1	0	0	1	1	1	0	Centromere-associated	protein	K
SPATA1_C	PF15743.5	gi|408403153|ref|YP_006861136.1|	-	0.094	12.8	0.2	0.18	11.9	0.2	1.4	1	0	0	1	1	1	0	Spermatogenesis-associated	C-terminus
DivIC	PF04977.15	gi|408403153|ref|YP_006861136.1|	-	0.12	12.2	0.4	0.27	11.0	0.4	1.5	1	0	0	1	1	1	0	Septum	formation	initiator
DUF3972	PF13118.6	gi|408403153|ref|YP_006861136.1|	-	0.13	12.7	1.0	0.27	11.7	0.4	1.8	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3972)
ZapB	PF06005.12	gi|408403153|ref|YP_006861136.1|	-	0.54	10.7	4.7	1.5	9.3	4.7	1.7	1	1	0	1	1	1	0	Cell	division	protein	ZapB
Tetraspanin	PF00335.20	gi|408403155|ref|YP_006861138.1|	-	0.28	10.9	2.0	0.28	10.8	1.3	1.4	1	1	0	1	1	1	0	Tetraspanin	family
PepSY	PF03413.19	gi|408403156|ref|YP_006861139.1|	-	0.029	14.9	0.1	0.073	13.6	0.0	1.6	2	0	0	2	2	2	0	Peptidase	propeptide	and	YPEB	domain
SKG6	PF08693.10	gi|408403156|ref|YP_006861139.1|	-	0.04	13.3	1.0	0.073	12.5	1.0	1.4	1	0	0	1	1	1	0	Transmembrane	alpha-helix	domain
TrfA	PF07042.11	gi|408403156|ref|YP_006861139.1|	-	0.079	12.0	0.0	0.1	11.6	0.0	1.1	1	0	0	1	1	1	0	TrfA	protein
DUF1082	PF06449.11	gi|408403156|ref|YP_006861139.1|	-	0.15	11.9	1.3	0.19	11.6	0.2	1.7	2	0	0	2	2	2	0	Mitochondrial	domain	of	unknown	function	(DUF1082)
Peptidase_M60_C	PF18630.1	gi|408403156|ref|YP_006861139.1|	-	0.15	12.2	0.0	0.44	10.7	0.0	1.8	1	1	0	1	1	1	0	Peptidase	M60	C-terminal	domain
DUF2613	PF11021.8	gi|408403156|ref|YP_006861139.1|	-	0.48	10.6	2.5	0.8	9.9	2.5	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2613)
Laminin_G_3	PF13385.6	gi|408403158|ref|YP_006861141.1|	-	3.9e-14	53.1	4.8	4e-14	53.0	2.9	1.8	1	1	1	2	2	2	1	Concanavalin	A-like	lectin/glucanases	superfamily
F5_F8_type_C	PF00754.25	gi|408403160|ref|YP_006861143.1|	-	1.1e-14	54.7	2.1	1.5e-14	54.2	1.2	1.6	1	1	0	1	1	1	1	F5/8	type	C	domain
F5_F8_type_C	PF00754.25	gi|408403161|ref|YP_006861144.1|	-	2.3e-10	40.7	3.7	2.3e-10	40.7	3.7	2.5	2	1	0	2	2	2	1	F5/8	type	C	domain
ParE_toxin	PF05016.15	gi|408403162|ref|YP_006861145.1|	-	0.00044	20.8	0.0	0.00058	20.4	0.0	1.2	1	0	0	1	1	1	1	ParE	toxin	of	type	II	toxin-antitoxin	system,	parDE
ParE-like_toxin	PF15781.5	gi|408403162|ref|YP_006861145.1|	-	0.0018	18.2	0.2	0.0039	17.1	0.2	1.7	1	1	0	1	1	1	1	ParE-like	toxin	of	type	II	bacterial	toxin-antitoxin	system
Imm58	PF15581.6	gi|408403163|ref|YP_006861146.1|	-	0.07	13.2	0.0	0.093	12.8	0.0	1.2	1	0	0	1	1	1	0	Immunity	protein	58
DUF4974	PF16344.5	gi|408403163|ref|YP_006861146.1|	-	0.15	12.0	0.1	0.29	11.2	0.1	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4974)
CDC48_N	PF02359.18	gi|408403164|ref|YP_006861147.1|	-	3.5e-10	39.9	0.0	6.5e-10	39.1	0.0	1.5	1	0	0	1	1	1	1	Cell	division	protein	48	(CDC48),	N-terminal	domain
CDC48_2	PF02933.17	gi|408403164|ref|YP_006861147.1|	-	0.00081	19.1	0.3	0.0019	18.0	0.0	1.7	2	0	0	2	2	2	1	Cell	division	protein	48	(CDC48),	domain	2
UFD1	PF03152.14	gi|408403164|ref|YP_006861147.1|	-	0.012	15.1	0.0	0.018	14.5	0.0	1.3	1	0	0	1	1	1	0	Ubiquitin	fusion	degradation	protein	UFD1
MtrG	PF04210.13	gi|408403166|ref|YP_006861149.1|	-	0.0084	16.0	0.1	0.016	15.0	0.1	1.5	1	0	0	1	1	1	1	Tetrahydromethanopterin	S-methyltransferase,	subunit	G
zf-C2H2	PF00096.26	gi|408403167|ref|YP_006861150.1|	-	0.00026	21.3	0.9	0.0004	20.7	0.9	1.3	1	0	0	1	1	1	1	Zinc	finger,	C2H2	type
zf-C2H2_4	PF13894.6	gi|408403167|ref|YP_006861150.1|	-	0.0035	18.0	1.0	0.0058	17.4	1.0	1.3	1	0	0	1	1	1	1	C2H2-type	zinc	finger
PPDK_N	PF01326.19	gi|408403168|ref|YP_006861151.1|	-	0.027	13.8	0.0	0.028	13.7	0.0	1.1	1	0	0	1	1	1	0	Pyruvate	phosphate	dikinase,	PEP/pyruvate	binding	domain
DUF2972	PF11186.8	gi|408403168|ref|YP_006861151.1|	-	0.043	13.7	0.1	0.053	13.4	0.1	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2972)
UPF0147	PF03685.13	gi|408403168|ref|YP_006861151.1|	-	0.099	12.7	0.2	0.15	12.1	0.2	1.2	1	0	0	1	1	1	0	Uncharacterised	protein	family	(UPF0147)
Hydrolase_3	PF08282.12	gi|408403172|ref|YP_006861155.1|	-	1.2e-27	97.3	0.1	5.3e-19	68.9	0.0	2.0	1	1	1	2	2	2	2	haloacid	dehalogenase-like	hydrolase
Hydrolase	PF00702.26	gi|408403172|ref|YP_006861155.1|	-	1e-07	32.5	0.4	0.00047	20.5	0.0	3.0	2	1	1	3	3	3	2	haloacid	dehalogenase-like	hydrolase
S6PP	PF05116.13	gi|408403172|ref|YP_006861155.1|	-	2.6e-07	30.4	0.0	0.0064	16.0	0.0	2.1	2	0	0	2	2	2	2	Sucrose-6F-phosphate	phosphohydrolase
HAD	PF12710.7	gi|408403172|ref|YP_006861155.1|	-	9e-05	23.0	0.0	0.015	15.8	0.0	2.3	2	0	0	2	2	2	2	haloacid	dehalogenase-like	hydrolase
Hydrolase_like	PF13242.6	gi|408403172|ref|YP_006861155.1|	-	0.0064	16.5	0.0	0.014	15.4	0.0	1.6	1	0	0	1	1	1	1	HAD-hyrolase-like
HAD_2	PF13419.6	gi|408403172|ref|YP_006861155.1|	-	0.041	14.0	0.1	0.086	12.9	0.0	1.7	2	0	0	2	2	2	0	Haloacid	dehalogenase-like	hydrolase
Hydrolase_6	PF13344.6	gi|408403172|ref|YP_006861155.1|	-	0.078	13.1	0.0	0.19	11.8	0.0	1.7	1	0	0	1	1	1	0	Haloacid	dehalogenase-like	hydrolase
DALR_1	PF05746.15	gi|408403173|ref|YP_006861156.1|	-	1.4e-32	112.4	3.8	2.6e-32	111.5	0.9	2.3	2	0	0	2	2	2	1	DALR	anticodon	binding	domain
tRNA-synt_1d	PF00750.19	gi|408403173|ref|YP_006861156.1|	-	1e-27	97.0	1.6	3.7e-19	68.9	0.1	2.2	2	0	0	2	2	2	2	tRNA	synthetases	class	I	(R)
Arg_tRNA_synt_N	PF03485.16	gi|408403173|ref|YP_006861156.1|	-	1.7e-18	67.0	0.1	1e-17	64.4	0.1	2.5	3	0	0	3	3	3	1	Arginyl	tRNA	synthetase	N	terminal	domain
tRNA-synt_1g	PF09334.11	gi|408403173|ref|YP_006861156.1|	-	0.044	12.5	0.2	0.072	11.8	0.2	1.3	1	0	0	1	1	1	0	tRNA	synthetases	class	I	(M)
C1_2	PF03107.16	gi|408403174|ref|YP_006861157.1|	-	0.0091	16.3	3.6	0.012	15.9	3.6	1.2	1	0	0	1	1	1	1	C1	domain
GCD14	PF08704.10	gi|408403175|ref|YP_006861158.1|	-	8.6e-37	127.1	0.0	3.6e-34	118.5	0.0	2.1	1	1	1	2	2	2	2	tRNA	methyltransferase	complex	GCD14	subunit
PCMT	PF01135.19	gi|408403175|ref|YP_006861158.1|	-	2.4e-12	47.1	0.0	3.7e-12	46.4	0.0	1.4	1	0	0	1	1	1	1	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
Methyltransf_31	PF13847.6	gi|408403175|ref|YP_006861158.1|	-	6e-12	45.6	0.0	8.5e-12	45.1	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.6	gi|408403175|ref|YP_006861158.1|	-	3.9e-08	33.9	0.0	1.8e-07	31.8	0.0	2.0	1	1	1	2	2	2	1	Methyltransferase	domain
Methyltransf_3	PF01596.17	gi|408403175|ref|YP_006861158.1|	-	3e-07	29.8	0.0	5.3e-07	29.0	0.0	1.4	1	0	0	1	1	1	1	O-methyltransferase
Ubie_methyltran	PF01209.18	gi|408403175|ref|YP_006861158.1|	-	2.7e-06	26.9	0.0	4.7e-06	26.1	0.0	1.4	1	0	0	1	1	1	1	ubiE/COQ5	methyltransferase	family
Methyltransf_24	PF13578.6	gi|408403175|ref|YP_006861158.1|	-	3.1e-05	25.0	0.0	6.7e-05	23.9	0.0	1.6	1	0	0	1	1	1	1	Methyltransferase	domain
PrmA	PF06325.13	gi|408403175|ref|YP_006861158.1|	-	4.1e-05	23.1	0.0	6.3e-05	22.5	0.0	1.3	1	0	0	1	1	1	1	Ribosomal	protein	L11	methyltransferase	(PrmA)
MTS	PF05175.14	gi|408403175|ref|YP_006861158.1|	-	4.8e-05	23.0	0.0	0.00011	21.9	0.0	1.5	1	0	0	1	1	1	1	Methyltransferase	small	domain
Methyltransf_12	PF08242.12	gi|408403175|ref|YP_006861158.1|	-	0.00026	21.7	0.0	0.0019	18.9	0.0	2.3	1	1	1	2	2	2	1	Methyltransferase	domain
Methyltransf_11	PF08241.12	gi|408403175|ref|YP_006861158.1|	-	0.00027	21.5	0.0	0.00068	20.2	0.0	1.7	1	1	0	1	1	1	1	Methyltransferase	domain
Fibrillarin	PF01269.17	gi|408403175|ref|YP_006861158.1|	-	0.00034	19.8	0.0	0.00072	18.7	0.0	1.5	1	0	0	1	1	1	1	Fibrillarin
Methyltransf_23	PF13489.6	gi|408403175|ref|YP_006861158.1|	-	0.0004	20.3	0.0	0.0013	18.6	0.0	1.9	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_18	PF12847.7	gi|408403175|ref|YP_006861158.1|	-	0.00042	20.3	0.0	0.00066	19.6	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
CMAS	PF02353.20	gi|408403175|ref|YP_006861158.1|	-	0.0031	16.9	0.0	0.0057	16.0	0.0	1.5	1	1	0	1	1	1	1	Mycolic	acid	cyclopropane	synthetase
Methyltransf_2	PF00891.18	gi|408403175|ref|YP_006861158.1|	-	0.0079	15.5	0.1	0.015	14.6	0.1	1.5	1	1	0	1	1	1	1	O-methyltransferase	domain
Methyltr_RsmB-F	PF01189.17	gi|408403175|ref|YP_006861158.1|	-	0.027	14.1	0.0	0.05	13.2	0.0	1.4	1	0	0	1	1	1	0	16S	rRNA	methyltransferase	RsmB/F
UPF0020	PF01170.18	gi|408403175|ref|YP_006861158.1|	-	0.031	14.0	0.0	0.098	12.3	0.0	1.8	2	0	0	2	2	2	0	Putative	RNA	methylase	family	UPF0020
Met_10	PF02475.16	gi|408403175|ref|YP_006861158.1|	-	0.032	14.0	0.0	0.055	13.2	0.0	1.4	1	0	0	1	1	1	0	Met-10+	like-protein
DUF938	PF06080.12	gi|408403175|ref|YP_006861158.1|	-	0.048	13.4	0.0	0.079	12.7	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF938)
Methyltransf_16	PF10294.9	gi|408403175|ref|YP_006861158.1|	-	0.071	12.8	0.0	0.13	11.9	0.0	1.5	1	0	0	1	1	1	0	Lysine	methyltransferase
GCD14_N	PF14801.6	gi|408403175|ref|YP_006861158.1|	-	0.073	12.9	0.0	0.15	12.0	0.0	1.5	1	0	0	1	1	1	0	tRNA	methyltransferase	complex	GCD14	subunit	N-term
YqzM	PF14141.6	gi|408403176|ref|YP_006861159.1|	-	0.014	15.4	0.3	0.94	9.6	0.0	2.7	2	0	0	2	2	2	0	YqzM-like	protein
DUF192	PF02643.15	gi|408403177|ref|YP_006861160.1|	-	5.8e-26	90.5	0.0	9.1e-26	89.8	0.0	1.3	1	0	0	1	1	1	1	Uncharacterized	ACR,	COG1430
HTH_OrfB_IS605	PF12323.8	gi|408403178|ref|YP_006861161.1|	-	1e-07	31.3	0.4	1.1e-07	31.2	0.4	1.1	1	0	0	1	1	1	1	Helix-turn-helix	domain
OrfB_IS605	PF01385.19	gi|408403179|ref|YP_006861162.1|	-	1.3e-16	60.9	0.3	1.7e-16	60.5	0.3	1.1	1	0	0	1	1	1	1	Probable	transposase
TrmB	PF01978.19	gi|408403180|ref|YP_006861163.1|	-	1.6e-16	59.9	0.3	3.7e-16	58.8	0.3	1.7	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
YkyA	PF10368.9	gi|408403180|ref|YP_006861163.1|	-	0.078	12.6	0.0	0.11	12.1	0.0	1.2	1	0	0	1	1	1	0	Putative	cell-wall	binding	lipoprotein
Ran-binding	PF05508.11	gi|408403182|ref|YP_006861165.1|	-	0.033	13.2	2.4	0.041	12.9	2.4	1.1	1	0	0	1	1	1	0	RanGTP-binding	protein
DUF2383	PF09537.10	gi|408403182|ref|YP_006861165.1|	-	0.037	14.4	3.6	0.95	9.8	3.6	2.4	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF2383)
DUF5064	PF16703.5	gi|408403182|ref|YP_006861165.1|	-	0.12	12.9	0.0	0.17	12.4	0.0	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF5064)
GARP	PF16731.5	gi|408403182|ref|YP_006861165.1|	-	1.1	8.8	15.2	2.4	7.8	0.2	2.1	2	0	0	2	2	2	0	Glutamic	acid/alanine-rich	protein	of	Trypanosoma
CwsA	PF10814.8	gi|408403182|ref|YP_006861165.1|	-	2.2	8.5	6.6	3.8	7.7	4.8	1.9	1	1	1	2	2	2	0	Cell	wall	synthesis	protein	CwsA
AAA	PF00004.29	gi|408403183|ref|YP_006861166.1|	-	2.4e-36	125.1	0.0	4.3e-36	124.2	0.0	1.4	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
MIT	PF04212.18	gi|408403183|ref|YP_006861166.1|	-	1.4e-06	28.3	3.5	1.4e-06	28.3	3.5	1.8	2	0	0	2	2	2	1	MIT	(microtubule	interacting	and	transport)	domain
AAA_16	PF13191.6	gi|408403183|ref|YP_006861166.1|	-	5.7e-05	23.6	0.0	0.0017	18.8	0.0	2.5	1	1	1	2	2	2	1	AAA	ATPase	domain
AAA_2	PF07724.14	gi|408403183|ref|YP_006861166.1|	-	7.3e-05	22.9	0.0	0.00017	21.8	0.0	1.6	1	0	0	1	1	1	1	AAA	domain	(Cdc48	subfamily)
AAA_lid_3	PF17862.1	gi|408403183|ref|YP_006861166.1|	-	8.8e-05	22.2	0.0	0.00031	20.5	0.0	2.0	2	0	0	2	2	2	1	AAA+	lid	domain
Vps4_C	PF09336.10	gi|408403183|ref|YP_006861166.1|	-	0.00014	21.8	0.0	0.0015	18.4	0.0	2.3	2	0	0	2	2	2	1	Vps4	C	terminal	oligomerisation	domain
RuvB_N	PF05496.12	gi|408403183|ref|YP_006861166.1|	-	0.00022	21.0	0.0	0.00045	20.0	0.0	1.6	1	1	0	1	1	1	1	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
AAA_22	PF13401.6	gi|408403183|ref|YP_006861166.1|	-	0.00026	21.3	0.1	0.034	14.4	0.0	3.0	1	1	1	2	2	2	1	AAA	domain
AAA_25	PF13481.6	gi|408403183|ref|YP_006861166.1|	-	0.0024	17.5	0.0	0.032	13.8	0.0	2.2	2	0	0	2	2	2	1	AAA	domain
AAA_5	PF07728.14	gi|408403183|ref|YP_006861166.1|	-	0.0025	17.8	0.0	0.038	14.0	0.0	2.7	2	0	0	2	2	2	1	AAA	domain	(dynein-related	subfamily)
AAA_14	PF13173.6	gi|408403183|ref|YP_006861166.1|	-	0.0055	16.7	0.0	0.014	15.4	0.0	1.7	1	0	0	1	1	1	1	AAA	domain
TIP49	PF06068.13	gi|408403183|ref|YP_006861166.1|	-	0.01	15.1	0.0	0.031	13.5	0.0	1.7	1	1	1	2	2	2	0	TIP49	P-loop	domain
AAA_24	PF13479.6	gi|408403183|ref|YP_006861166.1|	-	0.014	15.1	0.0	0.038	13.7	0.0	1.7	2	0	0	2	2	2	0	AAA	domain
RNA_helicase	PF00910.22	gi|408403183|ref|YP_006861166.1|	-	0.015	15.7	0.0	0.12	12.8	0.0	2.5	3	0	0	3	3	2	0	RNA	helicase
IstB_IS21	PF01695.17	gi|408403183|ref|YP_006861166.1|	-	0.019	14.7	0.0	0.036	13.8	0.0	1.4	1	0	0	1	1	1	0	IstB-like	ATP	binding	protein
Mg_chelatase	PF01078.21	gi|408403183|ref|YP_006861166.1|	-	0.021	14.2	0.0	0.049	13.0	0.0	1.5	1	0	0	1	1	1	0	Magnesium	chelatase,	subunit	ChlI
AAA_33	PF13671.6	gi|408403183|ref|YP_006861166.1|	-	0.023	14.8	0.0	0.036	14.2	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
AAA_18	PF13238.6	gi|408403183|ref|YP_006861166.1|	-	0.04	14.5	0.0	0.099	13.2	0.0	1.8	1	1	0	1	1	1	0	AAA	domain
Zeta_toxin	PF06414.12	gi|408403183|ref|YP_006861166.1|	-	0.076	12.3	0.0	0.18	11.1	0.0	1.6	1	0	0	1	1	1	0	Zeta	toxin
KAP_NTPase	PF07693.14	gi|408403183|ref|YP_006861166.1|	-	0.096	11.9	0.0	1.2	8.3	0.0	2.1	1	1	1	2	2	2	0	KAP	family	P-loop	domain
ATPase	PF06745.13	gi|408403183|ref|YP_006861166.1|	-	0.12	11.7	0.0	1.4	8.2	0.0	2.4	1	1	1	2	2	2	0	KaiC
ABC_tran	PF00005.27	gi|408403183|ref|YP_006861166.1|	-	0.13	12.8	0.1	0.83	10.2	0.0	2.1	2	0	0	2	2	2	0	ABC	transporter
PhoH	PF02562.16	gi|408403183|ref|YP_006861166.1|	-	0.18	11.2	0.1	0.35	10.3	0.1	1.4	1	0	0	1	1	1	0	PhoH-like	protein
Pyrophosphatase	PF00719.19	gi|408403184|ref|YP_006861167.1|	-	2.9e-52	176.7	0.0	3.4e-52	176.5	0.0	1.0	1	0	0	1	1	1	1	Inorganic	pyrophosphatase
DUF5622	PF18533.1	gi|408403184|ref|YP_006861167.1|	-	0.067	13.3	0.2	15	5.8	0.2	2.4	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF5622)
SNF2_N	PF00176.23	gi|408403185|ref|YP_006861168.1|	-	0.02	13.6	0.1	0.021	13.6	0.1	1.0	1	0	0	1	1	1	0	SNF2	family	N-terminal	domain
OrfB_Zn_ribbon	PF07282.11	gi|408403186|ref|YP_006861169.1|	-	1.4e-23	82.6	0.2	2.6e-23	81.7	0.2	1.5	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
OrfB_IS605	PF01385.19	gi|408403186|ref|YP_006861169.1|	-	4.6e-12	46.2	4.8	6e-12	45.8	4.2	1.5	1	1	0	1	1	1	1	Probable	transposase
Rpr2	PF04032.16	gi|408403186|ref|YP_006861169.1|	-	0.0013	19.0	3.9	0.75	10.1	0.4	2.8	1	1	2	3	3	3	2	RNAse	P	Rpr2/Rpp21/SNM1	subunit	domain
HypA	PF01155.19	gi|408403186|ref|YP_006861169.1|	-	0.006	16.6	0.1	0.0098	15.9	0.1	1.3	1	0	0	1	1	1	1	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
DZR	PF12773.7	gi|408403186|ref|YP_006861169.1|	-	0.0072	16.3	0.4	0.013	15.5	0.4	1.3	1	0	0	1	1	1	1	Double	zinc	ribbon
zf_UBZ	PF18439.1	gi|408403186|ref|YP_006861169.1|	-	0.009	15.6	1.9	0.21	11.2	0.2	2.3	1	1	1	2	2	2	1	Ubiquitin-Binding	Zinc	Finger
zinc_ribbon_2	PF13240.6	gi|408403186|ref|YP_006861169.1|	-	0.011	15.4	0.6	3.3	7.6	0.1	2.3	2	0	0	2	2	2	0	zinc-ribbon	domain
zf-ribbon_3	PF13248.6	gi|408403186|ref|YP_006861169.1|	-	0.021	14.2	2.3	0.16	11.4	2.3	2.0	1	1	1	2	2	2	0	zinc-ribbon	domain
TF_Zn_Ribbon	PF08271.12	gi|408403186|ref|YP_006861169.1|	-	0.028	13.9	2.6	0.25	10.9	2.4	2.2	1	1	1	2	2	2	0	TFIIB	zinc-binding
FYVE	PF01363.21	gi|408403186|ref|YP_006861169.1|	-	0.054	13.6	0.0	0.077	13.1	0.0	1.4	1	0	0	1	1	1	0	FYVE	zinc	finger
Nudix_N_2	PF14803.6	gi|408403186|ref|YP_006861169.1|	-	0.083	12.8	3.1	0.67	9.9	3.1	2.2	1	1	0	1	1	1	0	Nudix	N-terminal
zf-NADH-PPase	PF09297.11	gi|408403186|ref|YP_006861169.1|	-	0.11	12.2	3.0	0.21	11.3	3.0	1.5	1	0	0	1	1	1	0	NADH	pyrophosphatase	zinc	ribbon	domain
CCDC-167	PF15188.6	gi|408403186|ref|YP_006861169.1|	-	0.2	12.0	0.4	0.2	12.0	0.4	1.9	2	0	0	2	2	2	0	Coiled-coil	domain-containing	protein	167
TFIIS_C	PF01096.18	gi|408403186|ref|YP_006861169.1|	-	2.2	8.2	4.3	27	4.7	0.1	3.0	3	0	0	3	3	3	0	Transcription	factor	S-II	(TFIIS)
DUF2963	PF11178.8	gi|408403188|ref|YP_006861171.1|	-	0.065	13.0	0.5	0.09	12.5	0.2	1.3	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2963)
OrfB_IS605	PF01385.19	gi|408403189|ref|YP_006861172.1|	-	0.00039	20.6	0.1	0.0009	19.5	0.1	1.6	1	1	1	2	2	2	1	Probable	transposase
H_PPase	PF03030.16	gi|408403190|ref|YP_006861173.1|	-	4.6e-223	742.5	48.3	5.3e-223	742.3	48.3	1.0	1	0	0	1	1	1	1	Inorganic	H+	pyrophosphatase
tRNA-synt_1	PF00133.22	gi|408403193|ref|YP_006861176.1|	-	8.8e-129	430.5	0.1	1.2e-128	430.0	0.1	1.1	1	0	0	1	1	1	1	tRNA	synthetases	class	I	(I,	L,	M	and	V)
Anticodon_1	PF08264.13	gi|408403193|ref|YP_006861176.1|	-	5.2e-31	107.7	0.2	2e-30	105.8	0.0	2.0	2	0	0	2	2	2	1	Anticodon-binding	domain	of	tRNA
tRNA-synt_1g	PF09334.11	gi|408403193|ref|YP_006861176.1|	-	1.4e-19	70.1	0.3	2.4e-08	33.1	0.0	3.5	3	1	0	3	3	3	3	tRNA	synthetases	class	I	(M)
tRNA-synt_1e	PF01406.19	gi|408403193|ref|YP_006861176.1|	-	2.3e-05	23.9	0.0	0.00022	20.7	0.0	2.1	2	0	0	2	2	2	1	tRNA	synthetases	class	I	(C)	catalytic	domain
tRNA-synt_1f	PF01921.18	gi|408403193|ref|YP_006861176.1|	-	0.0043	16.0	0.0	0.011	14.7	0.0	1.6	1	0	0	1	1	1	1	tRNA	synthetases	class	I	(K)
tRNA-synt_1b	PF00579.25	gi|408403193|ref|YP_006861176.1|	-	0.055	12.8	0.0	0.1	11.9	0.0	1.3	1	0	0	1	1	1	0	tRNA	synthetases	class	I	(W	and	Y)
IL2	PF00715.17	gi|408403193|ref|YP_006861176.1|	-	0.09	12.7	0.1	0.26	11.2	0.1	1.7	1	0	0	1	1	1	0	Interleukin	2
DZR	PF12773.7	gi|408403193|ref|YP_006861176.1|	-	0.28	11.2	1.2	24	5.1	0.3	2.6	2	1	0	2	2	2	0	Double	zinc	ribbon
zf-ACC	PF17848.1	gi|408403193|ref|YP_006861176.1|	-	4.7	7.4	9.3	8.2	6.6	0.3	3.1	3	0	0	3	3	3	0	Acetyl-coA	carboxylase	zinc	finger	domain
UCH_N	PF16674.5	gi|408403195|ref|YP_006861178.1|	-	0.1	12.6	0.1	1.2	9.1	0.1	2.0	1	1	1	2	2	2	0	N-terminal	of	ubiquitin	carboxyl-terminal	hydrolase	37
DSPc	PF00782.20	gi|408403196|ref|YP_006861179.1|	-	8.7e-20	70.9	0.0	1.1e-19	70.6	0.0	1.1	1	0	0	1	1	1	1	Dual	specificity	phosphatase,	catalytic	domain
Y_phosphatase	PF00102.27	gi|408403196|ref|YP_006861179.1|	-	8e-09	35.4	0.0	1.1e-08	35.0	0.0	1.2	1	0	0	1	1	1	1	Protein-tyrosine	phosphatase
PTPlike_phytase	PF14566.6	gi|408403196|ref|YP_006861179.1|	-	1.1e-06	28.8	0.0	1.6e-06	28.3	0.0	1.2	1	0	0	1	1	1	1	Inositol	hexakisphosphate
Y_phosphatase3	PF13350.6	gi|408403196|ref|YP_006861179.1|	-	7.6e-06	26.1	0.0	9.6e-06	25.7	0.0	1.2	1	0	0	1	1	1	1	Tyrosine	phosphatase	family
Y_phosphatase2	PF03162.13	gi|408403196|ref|YP_006861179.1|	-	0.00044	19.9	0.0	0.00079	19.0	0.0	1.4	1	1	0	1	1	1	1	Tyrosine	phosphatase	family
CDKN3	PF05706.12	gi|408403196|ref|YP_006861179.1|	-	0.013	15.2	0.0	0.017	14.8	0.0	1.1	1	0	0	1	1	1	0	Cyclin-dependent	kinase	inhibitor	3	(CDKN3)
Init_tRNA_PT	PF04179.12	gi|408403196|ref|YP_006861179.1|	-	0.08	13.2	0.0	0.12	12.7	0.0	1.2	1	0	0	1	1	1	0	Rit1	DUSP-like	domain
TF_Zn_Ribbon	PF08271.12	gi|408403197|ref|YP_006861180.1|	-	0.00014	21.3	0.9	0.00018	20.9	0.9	1.3	1	0	0	1	1	1	1	TFIIB	zinc-binding
OrfB_Zn_ribbon	PF07282.11	gi|408403197|ref|YP_006861180.1|	-	0.00079	19.3	1.8	0.0012	18.7	1.8	1.3	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
DUF2225	PF09986.9	gi|408403197|ref|YP_006861180.1|	-	0.0014	18.4	0.5	0.005	16.6	0.0	1.8	1	1	1	2	2	2	1	Uncharacterized	protein	conserved	in	bacteria	(DUF2225)
HypA	PF01155.19	gi|408403197|ref|YP_006861180.1|	-	0.0026	17.8	0.4	0.003	17.6	0.4	1.1	1	0	0	1	1	1	1	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
Ribosomal_S27e	PF01667.17	gi|408403197|ref|YP_006861180.1|	-	0.0031	17.2	0.6	0.0042	16.8	0.6	1.2	1	0	0	1	1	1	1	Ribosomal	protein	S27
zinc_ribbon_5	PF13719.6	gi|408403197|ref|YP_006861180.1|	-	0.01	15.6	3.5	0.022	14.5	3.5	1.5	1	1	0	1	1	1	0	zinc-ribbon	domain
DZR	PF12773.7	gi|408403197|ref|YP_006861180.1|	-	0.013	15.5	1.3	0.019	15.0	1.3	1.3	1	0	0	1	1	1	0	Double	zinc	ribbon
zinc_ribbon_4	PF13717.6	gi|408403197|ref|YP_006861180.1|	-	0.022	14.7	3.5	0.26	11.3	3.5	2.1	1	1	0	1	1	1	0	zinc-ribbon	domain
CpXC	PF14353.6	gi|408403197|ref|YP_006861180.1|	-	0.027	14.5	2.2	1.4	8.9	0.2	2.1	1	1	1	2	2	2	0	CpXC	protein
zf-RING_7	PF02591.15	gi|408403197|ref|YP_006861180.1|	-	0.029	14.6	1.5	0.9	9.8	0.6	2.3	2	0	0	2	2	2	0	C4-type	zinc	ribbon	domain
zinc_ribbon_13	PF09855.9	gi|408403197|ref|YP_006861180.1|	-	0.042	14.0	2.7	0.26	11.5	0.2	2.1	1	1	1	2	2	2	0	Nucleic-acid-binding	protein	containing	Zn-ribbon	domain	(DUF2082)
DNA_RNApol_7kD	PF03604.13	gi|408403197|ref|YP_006861180.1|	-	0.047	13.4	3.5	0.1	12.3	3.5	1.5	1	1	0	1	1	1	0	DNA	directed	RNA	polymerase,	7	kDa	subunit
UPF0547	PF10571.9	gi|408403197|ref|YP_006861180.1|	-	0.049	13.7	5.3	1.6	8.9	0.5	2.2	2	0	0	2	2	2	0	Uncharacterised	protein	family	UPF0547
zinc_ribbon_2	PF13240.6	gi|408403197|ref|YP_006861180.1|	-	0.072	12.8	7.5	0.5	10.2	7.5	2.1	1	1	0	1	1	1	0	zinc-ribbon	domain
zinc_ribbon_6	PF14599.6	gi|408403197|ref|YP_006861180.1|	-	0.081	12.9	0.8	0.11	12.5	0.8	1.3	1	0	0	1	1	1	0	Zinc-ribbon
Lar_restr_allev	PF14354.6	gi|408403197|ref|YP_006861180.1|	-	0.19	12.1	2.8	0.23	11.8	2.5	1.4	1	1	0	1	1	1	0	Restriction	alleviation	protein	Lar
zf-ISL3	PF14690.6	gi|408403197|ref|YP_006861180.1|	-	0.19	12.4	4.1	1.3	9.8	0.5	2.1	1	1	1	2	2	2	0	zinc-finger	of	transposase	IS204/IS1001/IS1096/IS1165
SpdB	PF05122.13	gi|408403197|ref|YP_006861180.1|	-	0.22	11.7	0.9	0.22	11.7	0.9	1.8	1	1	1	2	2	2	0	Mobile	element	transfer	protein
Zn-ribbon_8	PF09723.10	gi|408403197|ref|YP_006861180.1|	-	0.25	11.5	5.5	0.88	9.7	5.5	1.8	1	1	0	1	1	1	0	Zinc	ribbon	domain
Ogr_Delta	PF04606.12	gi|408403197|ref|YP_006861180.1|	-	0.28	11.2	2.0	1	9.4	0.1	2.1	2	0	0	2	2	2	0	Ogr/Delta-like	zinc	finger
zf-ribbon_3	PF13248.6	gi|408403197|ref|YP_006861180.1|	-	0.3	10.6	7.8	6.9	6.2	7.8	2.2	1	1	0	1	1	1	0	zinc-ribbon	domain
Mu-like_Com	PF10122.9	gi|408403197|ref|YP_006861180.1|	-	0.47	9.9	6.7	4.1	6.9	0.2	2.5	2	1	1	3	3	3	0	Mu-like	prophage	protein	Com
zf-C2H2	PF00096.26	gi|408403197|ref|YP_006861180.1|	-	1.2	9.7	4.1	24	5.6	0.3	2.2	2	0	0	2	2	2	0	Zinc	finger,	C2H2	type
Rubredoxin_2	PF18073.1	gi|408403197|ref|YP_006861180.1|	-	4.4	7.1	7.7	8.7	6.2	0.7	2.3	2	0	0	2	2	2	0	Rubredoxin	metal	binding	domain
zf-ACC	PF17848.1	gi|408403197|ref|YP_006861180.1|	-	4.8	7.4	6.8	12	6.1	1.0	2.6	3	0	0	3	3	2	0	Acetyl-coA	carboxylase	zinc	finger	domain
zf-H2C2_5	PF13909.6	gi|408403197|ref|YP_006861180.1|	-	8.2	6.3	8.5	2	8.3	0.7	2.5	3	0	0	3	3	3	0	C2H2-type	zinc-finger	domain
Ribosomal_S6e	PF01092.19	gi|408403198|ref|YP_006861181.1|	-	9.8e-24	83.7	0.5	1.2e-23	83.4	0.5	1.1	1	0	0	1	1	1	1	Ribosomal	protein	S6e
GTP_EFTU	PF00009.27	gi|408403199|ref|YP_006861182.1|	-	2.9e-32	111.8	0.4	1.8e-31	109.2	0.4	1.9	1	1	0	1	1	1	1	Elongation	factor	Tu	GTP	binding	domain
eIF2_C	PF09173.11	gi|408403199|ref|YP_006861182.1|	-	2.7e-28	98.0	0.2	8.1e-28	96.5	0.2	1.9	1	0	0	1	1	1	1	Initiation	factor	eIF2	gamma,	C	terminal
GTP_EFTU_D2	PF03144.25	gi|408403199|ref|YP_006861182.1|	-	3.3e-05	24.2	0.5	8.6e-05	22.9	0.5	1.7	1	0	0	1	1	1	1	Elongation	factor	Tu	domain	2
RsgA_GTPase	PF03193.16	gi|408403199|ref|YP_006861182.1|	-	4.7e-05	23.4	0.4	0.0015	18.5	0.1	2.3	2	0	0	2	2	2	1	RsgA	GTPase
MMR_HSR1	PF01926.23	gi|408403199|ref|YP_006861182.1|	-	0.00027	21.0	0.0	0.00063	19.8	0.0	1.7	1	0	0	1	1	1	1	50S	ribosome-binding	GTPase
MMR_HSR1_Xtn	PF16897.5	gi|408403199|ref|YP_006861182.1|	-	0.0053	16.8	0.3	0.014	15.4	0.3	1.6	1	0	0	1	1	1	1	C-terminal	region	of	MMR_HSR1	domain
MeaB	PF03308.16	gi|408403199|ref|YP_006861182.1|	-	0.069	12.1	0.8	0.25	10.3	0.1	1.9	2	0	0	2	2	2	0	Methylmalonyl	Co-A	mutase-associated	GTPase	MeaB
SH3_15	PF18346.1	gi|408403199|ref|YP_006861182.1|	-	0.09	13.1	0.1	0.29	11.5	0.0	1.8	2	0	0	2	2	2	0	Mind	bomb	SH3	repeat	domain
AAA_23	PF13476.6	gi|408403199|ref|YP_006861182.1|	-	0.11	12.9	0.3	2.4	8.6	0.0	2.1	2	0	0	2	2	2	0	AAA	domain
OrfB_Zn_ribbon	PF07282.11	gi|408403200|ref|YP_006861183.1|	-	1.6e-15	56.8	0.2	2.2e-15	56.3	0.2	1.2	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
HypA	PF01155.19	gi|408403200|ref|YP_006861183.1|	-	0.026	14.5	0.1	0.041	13.9	0.1	1.3	1	0	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
Ribosomal_L37ae	PF01780.19	gi|408403200|ref|YP_006861183.1|	-	0.058	13.5	0.2	0.086	12.9	0.2	1.2	1	0	0	1	1	1	0	Ribosomal	L37ae	protein	family
zf_UBZ	PF18439.1	gi|408403200|ref|YP_006861183.1|	-	0.2	11.3	3.8	2.8	7.6	0.3	2.4	1	1	1	2	2	2	0	Ubiquitin-Binding	Zinc	Finger
Lactamase_B_3	PF13483.6	gi|408403201|ref|YP_006861184.1|	-	2.6e-29	102.2	0.3	3.1e-29	102.0	0.3	1.1	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
Lactamase_B_2	PF12706.7	gi|408403201|ref|YP_006861184.1|	-	1.3e-18	67.2	0.3	1.7e-18	66.9	0.3	1.1	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
Lactamase_B	PF00753.27	gi|408403201|ref|YP_006861184.1|	-	0.025	14.6	0.8	0.044	13.8	0.8	1.4	1	1	0	1	1	1	0	Metallo-beta-lactamase	superfamily
Rhodanese_C	PF12368.8	gi|408403202|ref|YP_006861185.1|	-	0.028	14.8	0.3	0.031	14.7	0.3	1.1	1	0	0	1	1	1	0	Rhodanase	C-terminal
Yippee-Mis18	PF03226.14	gi|408403202|ref|YP_006861185.1|	-	0.038	14.2	1.5	0.18	12.0	1.5	1.8	1	1	0	1	1	1	0	Yippee	zinc-binding/DNA-binding	/Mis18,	centromere	assembly
Asn_synthase	PF00733.21	gi|408403205|ref|YP_006861188.1|	-	1e-20	74.7	0.0	1.3e-20	74.4	0.0	1.1	1	0	0	1	1	1	1	Asparagine	synthase
Glycos_transf_2	PF00535.26	gi|408403206|ref|YP_006861189.1|	-	1.3e-11	44.6	0.0	2.3e-11	43.8	0.0	1.5	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_tranf_2_3	PF13641.6	gi|408403206|ref|YP_006861189.1|	-	6.2e-05	23.0	0.0	0.00014	21.8	0.0	1.4	1	1	0	1	1	1	1	Glycosyltransferase	like	family	2
Glyco_transf_21	PF13506.6	gi|408403206|ref|YP_006861189.1|	-	0.022	14.2	0.0	0.036	13.5	0.0	1.3	1	0	0	1	1	1	0	Glycosyl	transferase	family	21
Glyco_trans_2_3	PF13632.6	gi|408403206|ref|YP_006861189.1|	-	0.14	12.1	0.0	0.33	10.9	0.0	1.6	1	1	0	1	1	1	0	Glycosyl	transferase	family	group	2
Formyl_trans_C	PF02911.18	gi|408403207|ref|YP_006861190.1|	-	7.5e-19	67.8	0.0	1.3e-18	67.0	0.0	1.4	1	0	0	1	1	1	1	Formyl	transferase,	C-terminal	domain
Formyl_trans_N	PF00551.19	gi|408403207|ref|YP_006861190.1|	-	1.4e-15	57.5	0.0	4e-15	56.0	0.0	1.8	2	0	0	2	2	2	1	Formyl	transferase
Eaf7	PF07904.13	gi|408403207|ref|YP_006861190.1|	-	0.011	16.1	0.0	0.02	15.2	0.0	1.4	1	0	0	1	1	1	0	Chromatin	modification-related	protein	EAF7
IFP_35_N	PF07334.13	gi|408403207|ref|YP_006861190.1|	-	0.42	10.7	1.7	0.99	9.5	1.7	1.5	1	0	0	1	1	1	0	Interferon-induced	35	kDa	protein	(IFP	35)	N-terminus
Polysacc_deac_1	PF01522.21	gi|408403208|ref|YP_006861191.1|	-	0.0036	17.2	0.1	0.0074	16.2	0.1	1.6	1	0	0	1	1	1	1	Polysaccharide	deacetylase
Glycos_transf_1	PF00534.20	gi|408403209|ref|YP_006861192.1|	-	4.2e-15	55.7	0.0	5.7e-15	55.3	0.0	1.2	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.6	gi|408403209|ref|YP_006861192.1|	-	1.8e-06	28.5	0.0	2.9e-06	27.8	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_2	PF13524.6	gi|408403209|ref|YP_006861192.1|	-	3.6e-06	27.3	0.0	8.7e-06	26.0	0.0	1.6	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
DDE_Tnp_IS1595	PF12762.7	gi|408403210|ref|YP_006861193.1|	-	0.00098	19.2	0.0	0.0011	19.0	0.0	1.0	1	0	0	1	1	1	1	ISXO2-like	transposase	domain
Pox_T4_N	PF04491.12	gi|408403212|ref|YP_006861195.1|	-	0.13	12.1	0.3	0.27	11.1	0.0	1.6	2	0	0	2	2	2	0	Poxvirus	T4	protein,	N	terminus
Methyltransf_11	PF08241.12	gi|408403214|ref|YP_006861197.1|	-	6.5e-21	74.8	0.1	1.8e-20	73.4	0.0	1.8	2	0	0	2	2	2	1	Methyltransferase	domain
Methyltransf_23	PF13489.6	gi|408403214|ref|YP_006861197.1|	-	7.2e-16	58.5	0.0	9.9e-16	58.0	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.6	gi|408403214|ref|YP_006861197.1|	-	1.5e-15	57.6	0.0	3.5e-15	56.5	0.0	1.6	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.6	gi|408403214|ref|YP_006861197.1|	-	9.4e-14	51.5	0.0	1.3e-13	51.1	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.12	gi|408403214|ref|YP_006861197.1|	-	1.2e-11	45.3	0.0	2.4e-11	44.2	0.0	1.6	1	0	0	1	1	1	1	Methyltransferase	domain
Ubie_methyltran	PF01209.18	gi|408403214|ref|YP_006861197.1|	-	1.2e-10	41.2	0.0	1.8e-10	40.5	0.0	1.2	1	0	0	1	1	1	1	ubiE/COQ5	methyltransferase	family
Methyltransf_8	PF05148.15	gi|408403214|ref|YP_006861197.1|	-	5.7e-07	29.6	0.0	8.6e-07	29.0	0.0	1.3	1	0	0	1	1	1	1	Hypothetical	methyltransferase
MetW	PF07021.12	gi|408403214|ref|YP_006861197.1|	-	1.3e-06	28.1	0.0	1.9e-06	27.6	0.0	1.2	1	0	0	1	1	1	1	Methionine	biosynthesis	protein	MetW
Methyltransf_32	PF13679.6	gi|408403214|ref|YP_006861197.1|	-	0.00097	19.1	0.0	0.0013	18.8	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_29	PF03141.16	gi|408403214|ref|YP_006861197.1|	-	0.0021	16.7	0.0	0.0034	16.0	0.0	1.3	1	0	0	1	1	1	1	Putative	S-adenosyl-L-methionine-dependent	methyltransferase
MTS	PF05175.14	gi|408403214|ref|YP_006861197.1|	-	0.0079	15.8	0.1	0.038	13.5	0.0	2.1	2	1	0	2	2	2	1	Methyltransferase	small	domain
p450	PF00067.22	gi|408403214|ref|YP_006861197.1|	-	0.063	12.0	0.0	0.11	11.3	0.0	1.3	1	0	0	1	1	1	0	Cytochrome	P450
Epimerase	PF01370.21	gi|408403215|ref|YP_006861198.1|	-	5.9e-43	147.1	0.1	7.3e-43	146.8	0.1	1.1	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
GDP_Man_Dehyd	PF16363.5	gi|408403215|ref|YP_006861198.1|	-	8.9e-42	143.7	1.1	3.9e-41	141.5	1.1	1.8	1	1	0	1	1	1	1	GDP-mannose	4,6	dehydratase
3Beta_HSD	PF01073.19	gi|408403215|ref|YP_006861198.1|	-	7e-14	51.5	1.2	9e-14	51.1	1.2	1.2	1	0	0	1	1	1	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
RmlD_sub_bind	PF04321.17	gi|408403215|ref|YP_006861198.1|	-	3.3e-11	42.8	0.1	4.3e-11	42.4	0.1	1.2	1	0	0	1	1	1	1	RmlD	substrate	binding	domain
Polysacc_synt_2	PF02719.15	gi|408403215|ref|YP_006861198.1|	-	8.8e-10	38.2	0.1	6.6e-09	35.3	0.1	2.0	1	1	0	1	1	1	1	Polysaccharide	biosynthesis	protein
NAD_binding_4	PF07993.12	gi|408403215|ref|YP_006861198.1|	-	1.1e-09	37.8	1.7	0.00011	21.4	0.1	2.6	2	1	1	3	3	3	2	Male	sterility	protein
KR	PF08659.10	gi|408403215|ref|YP_006861198.1|	-	0.00021	21.3	0.3	0.0062	16.5	0.3	2.5	1	1	0	1	1	1	1	KR	domain
NAD_binding_10	PF13460.6	gi|408403215|ref|YP_006861198.1|	-	0.00027	20.9	0.0	0.0015	18.5	0.0	2.1	1	1	0	2	2	2	1	NAD(P)H-binding
NAD_binding_7	PF13241.6	gi|408403215|ref|YP_006861198.1|	-	0.0075	16.7	0.1	0.07	13.6	0.0	2.4	2	1	1	3	3	3	1	Putative	NAD(P)-binding
UDPG_MGDP_dh_N	PF03721.14	gi|408403215|ref|YP_006861198.1|	-	0.02	14.5	0.3	1	8.9	0.0	2.6	2	1	0	2	2	2	0	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
NAD_binding_2	PF03446.15	gi|408403215|ref|YP_006861198.1|	-	0.04	14.1	0.0	0.74	10.0	0.0	2.3	2	0	0	2	2	2	0	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
NmrA	PF05368.13	gi|408403215|ref|YP_006861198.1|	-	0.049	13.2	0.2	0.61	9.6	0.0	2.3	2	1	0	2	2	2	0	NmrA-like	family
F420_oxidored	PF03807.17	gi|408403215|ref|YP_006861198.1|	-	0.05	14.2	0.1	2.8	8.6	0.0	2.5	2	0	0	2	2	2	0	NADP	oxidoreductase	coenzyme	F420-dependent
DUF1525	PF07511.11	gi|408403215|ref|YP_006861198.1|	-	0.09	12.9	0.0	2.6	8.2	0.0	2.8	2	1	1	3	3	3	0	Protein	of	unknown	function	(DUF1525)
TrkA_N	PF02254.18	gi|408403215|ref|YP_006861198.1|	-	0.1	12.8	0.5	0.86	9.9	0.0	2.3	2	0	0	2	2	2	0	TrkA-N	domain
Glycos_transf_1	PF00534.20	gi|408403216|ref|YP_006861199.1|	-	1.2e-12	47.7	0.0	2.4e-12	46.7	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.6	gi|408403216|ref|YP_006861199.1|	-	2e-06	28.3	0.0	4.7e-06	27.1	0.0	1.7	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Pro_isomerase	PF00160.21	gi|408403217|ref|YP_006861200.1|	-	9.5e-50	168.9	0.1	1.6e-49	168.2	0.1	1.4	1	0	0	1	1	1	1	Cyclophilin	type	peptidyl-prolyl	cis-trans	isomerase/CLD
STT3	PF02516.14	gi|408403217|ref|YP_006861200.1|	-	5.6e-38	131.1	35.6	4.2e-37	128.2	35.6	2.5	1	1	0	1	1	1	1	Oligosaccharyl	transferase	STT3	subunit
PMT_2	PF13231.6	gi|408403217|ref|YP_006861200.1|	-	1.8e-07	31.5	13.2	1.8e-07	31.5	13.2	3.1	3	1	1	4	4	4	1	Dolichyl-phosphate-mannose-protein	mannosyltransferase
ParBc	PF02195.18	gi|408403220|ref|YP_006861203.1|	-	9.2e-20	70.7	0.2	2.4e-19	69.4	0.0	1.8	2	0	0	2	2	2	1	ParB-like	nuclease	domain
KorB	PF08535.10	gi|408403220|ref|YP_006861203.1|	-	0.00046	20.2	0.1	0.0022	18.0	0.0	2.3	2	0	0	2	2	2	1	KorB	domain
HTH_ParB	PF17762.1	gi|408403220|ref|YP_006861203.1|	-	0.0062	16.3	0.9	0.018	14.8	0.4	2.0	2	0	0	2	2	2	1	HTH	domain	found	in	ParB	protein
ScdA_N	PF04405.14	gi|408403220|ref|YP_006861203.1|	-	0.034	13.8	0.0	0.083	12.6	0.0	1.6	1	0	0	1	1	1	0	Domain	of	Unknown	function	(DUF542)
H-kinase_dim	PF02895.14	gi|408403220|ref|YP_006861203.1|	-	0.082	13.3	0.7	1	9.8	0.1	2.7	2	1	0	2	2	2	0	Signal	transducing	histidine	kinase,	homodimeric	domain
HTH_5	PF01022.20	gi|408403220|ref|YP_006861203.1|	-	0.11	12.4	0.1	0.51	10.2	0.1	2.1	2	0	0	2	2	2	0	Bacterial	regulatory	protein,	arsR	family
DUF148	PF02520.17	gi|408403220|ref|YP_006861203.1|	-	0.7	10.0	6.6	0.3	11.2	2.1	2.6	2	1	1	3	3	3	0	Domain	of	unknown	function	DUF148
HTH_24	PF13412.6	gi|408403220|ref|YP_006861203.1|	-	1.4	8.5	6.4	4.5	6.9	0.0	3.3	4	0	0	4	4	4	0	Winged	helix-turn-helix	DNA-binding
HTH_24	PF13412.6	gi|408403221|ref|YP_006861204.1|	-	0.00055	19.5	0.3	0.76	9.4	0.0	2.2	2	0	0	2	2	2	2	Winged	helix-turn-helix	DNA-binding
HTH_AsnC-type	PF13404.6	gi|408403221|ref|YP_006861204.1|	-	0.0036	17.1	0.6	0.054	13.3	0.6	2.1	1	1	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
YjcQ	PF09639.10	gi|408403221|ref|YP_006861204.1|	-	0.1	12.8	0.1	0.41	10.9	0.0	1.8	2	0	0	2	2	2	0	YjcQ	protein
DUF1192	PF06698.11	gi|408403221|ref|YP_006861204.1|	-	0.14	12.3	0.6	0.27	11.3	0.4	1.6	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1192)
CtsR_C	PF17727.1	gi|408403221|ref|YP_006861204.1|	-	0.18	12.0	0.3	0.93	9.7	0.1	2.1	1	1	1	2	2	2	0	CtsR	C-terminal	dimerization	domain
SSF	PF00474.17	gi|408403222|ref|YP_006861205.1|	-	3.8e-29	101.8	39.8	7.7e-29	100.8	39.8	1.5	1	0	0	1	1	1	1	Sodium:solute	symporter	family
Usp	PF00582.26	gi|408403222|ref|YP_006861205.1|	-	2e-19	70.5	0.1	4.2e-19	69.5	0.1	1.5	1	0	0	1	1	1	1	Universal	stress	protein	family
NicO	PF03824.16	gi|408403223|ref|YP_006861206.1|	-	0.0031	16.9	0.2	0.0033	16.8	0.2	1.1	1	0	0	1	1	1	1	High-affinity	nickel-transport	protein
OrfB_IS605	PF01385.19	gi|408403224|ref|YP_006861207.1|	-	2e-09	37.7	4.2	2.8e-09	37.3	4.2	1.2	1	0	0	1	1	1	1	Probable	transposase
UT	PF03253.14	gi|408403226|ref|YP_006861209.1|	-	4.5e-51	173.7	40.4	4e-22	78.7	11.8	3.0	2	1	1	3	3	3	3	Urea	transporter
bPH_3	PF14470.6	gi|408403227|ref|YP_006861210.1|	-	0.13	12.7	0.1	3	8.3	0.0	2.2	2	0	0	2	2	2	0	Bacterial	PH	domain
Urease_gamma	PF00547.18	gi|408403228|ref|YP_006861211.1|	-	9.8e-44	147.7	0.0	1.1e-43	147.6	0.0	1.0	1	0	0	1	1	1	1	Urease,	gamma	subunit
Urease_beta	PF00699.20	gi|408403229|ref|YP_006861212.1|	-	3.1e-41	139.3	0.0	3.8e-41	139.1	0.0	1.1	1	0	0	1	1	1	1	Urease	beta	subunit
Herpes_ORF11	PF04797.13	gi|408403229|ref|YP_006861212.1|	-	0.093	11.5	0.0	0.12	11.2	0.0	1.1	1	0	0	1	1	1	0	Herpesvirus	dUTPase	protein
Amidohydro_1	PF01979.20	gi|408403230|ref|YP_006861213.1|	-	1.8e-62	211.7	1.1	2.2e-62	211.4	1.1	1.1	1	0	0	1	1	1	1	Amidohydrolase	family
Urease_alpha	PF00449.20	gi|408403230|ref|YP_006861213.1|	-	7.1e-51	171.6	0.8	1.5e-50	170.6	0.8	1.6	1	0	0	1	1	1	1	Urease	alpha-subunit,	N-terminal	domain
Amidohydro_3	PF07969.11	gi|408403230|ref|YP_006861213.1|	-	9.3e-06	25.4	1.7	9.3e-06	25.4	1.7	2.2	1	1	0	2	2	2	1	Amidohydrolase	family
Cpn60_TCP1	PF00118.24	gi|408403231|ref|YP_006861214.1|	-	9.9e-106	354.3	12.5	1.2e-105	353.9	12.5	1.0	1	0	0	1	1	1	1	TCP-1/cpn60	chaperonin	family
Ribosomal_L26	PF16906.5	gi|408403231|ref|YP_006861214.1|	-	0.019	15.4	0.3	0.059	13.8	0.3	1.9	1	1	0	1	1	1	0	Ribosomal	proteins	L26	eukaryotic,	L24P	archaeal
FtsA	PF14450.6	gi|408403231|ref|YP_006861214.1|	-	0.079	13.4	0.7	0.21	12.1	0.3	1.9	1	1	0	1	1	1	0	Cell	division	protein	FtsA
PALP	PF00291.25	gi|408403231|ref|YP_006861214.1|	-	0.089	12.2	2.1	9.1	5.6	0.0	3.0	2	1	0	2	2	2	0	Pyridoxal-phosphate	dependent	enzyme
MCR_gamma	PF02240.16	gi|408403232|ref|YP_006861215.1|	-	0.044	13.0	0.0	0.059	12.6	0.0	1.3	1	0	0	1	1	1	0	Methyl-coenzyme	M	reductase	gamma	subunit
UreE_N	PF02814.15	gi|408403233|ref|YP_006861216.1|	-	3e-12	45.9	0.0	5.9e-12	45.0	0.0	1.5	1	0	0	1	1	1	1	UreE	urease	accessory	protein,	N-terminal	domain
UreE_C	PF05194.12	gi|408403233|ref|YP_006861216.1|	-	0.0014	19.0	0.1	0.0026	18.2	0.1	1.5	1	0	0	1	1	1	1	UreE	urease	accessory	protein,	C-terminal	domain
UreF	PF01730.16	gi|408403234|ref|YP_006861217.1|	-	2.4e-24	86.4	0.0	3.1e-24	86.1	0.0	1.1	1	0	0	1	1	1	1	UreF
cobW	PF02492.19	gi|408403235|ref|YP_006861218.1|	-	7e-31	107.2	0.0	8.3e-31	106.9	0.0	1.1	1	0	0	1	1	1	1	CobW/HypB/UreG,	nucleotide-binding	domain
MeaB	PF03308.16	gi|408403235|ref|YP_006861218.1|	-	3.5e-10	39.3	1.7	8.1e-10	38.1	1.7	1.6	1	1	0	1	1	1	1	Methylmalonyl	Co-A	mutase-associated	GTPase	MeaB
MobB	PF03205.14	gi|408403235|ref|YP_006861218.1|	-	1.9e-06	27.8	0.1	3.5e-06	27.0	0.0	1.5	2	0	0	2	2	2	1	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
NTPase_1	PF03266.15	gi|408403235|ref|YP_006861218.1|	-	0.00027	20.9	0.0	0.00048	20.1	0.0	1.4	1	0	0	1	1	1	1	NTPase
SRP54	PF00448.22	gi|408403235|ref|YP_006861218.1|	-	0.015	14.9	0.0	0.037	13.7	0.0	1.6	2	0	0	2	2	2	0	SRP54-type	protein,	GTPase	domain
AAA_18	PF13238.6	gi|408403235|ref|YP_006861218.1|	-	0.039	14.5	0.0	0.064	13.8	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
GTP_EFTU	PF00009.27	gi|408403235|ref|YP_006861218.1|	-	0.041	13.4	0.1	4.9	6.6	0.0	2.7	2	1	1	3	3	3	0	Elongation	factor	Tu	GTP	binding	domain
LpxK	PF02606.14	gi|408403235|ref|YP_006861218.1|	-	0.042	13.0	0.0	0.059	12.5	0.0	1.2	1	0	0	1	1	1	0	Tetraacyldisaccharide-1-P	4'-kinase
AAA_30	PF13604.6	gi|408403235|ref|YP_006861218.1|	-	0.044	13.5	0.0	0.058	13.1	0.0	1.2	1	0	0	1	1	1	0	AAA	domain
ATP_bind_1	PF03029.17	gi|408403235|ref|YP_006861218.1|	-	0.059	13.1	0.1	0.096	12.4	0.1	1.3	1	0	0	1	1	1	0	Conserved	hypothetical	ATP	binding	protein
Mg_chelatase	PF01078.21	gi|408403235|ref|YP_006861218.1|	-	0.15	11.4	0.0	0.21	10.9	0.0	1.2	1	0	0	1	1	1	0	Magnesium	chelatase,	subunit	ChlI
UreD	PF01774.17	gi|408403236|ref|YP_006861219.1|	-	8.2e-45	153.3	0.0	1e-44	153.0	0.0	1.1	1	0	0	1	1	1	1	UreD	urease	accessory	protein
HTH_45	PF14947.6	gi|408403237|ref|YP_006861220.1|	-	0.00073	19.5	0.0	0.00092	19.1	0.0	1.1	1	0	0	1	1	1	1	Winged	helix-turn-helix
RIX1	PF08167.12	gi|408403237|ref|YP_006861220.1|	-	0.048	13.4	0.1	5.9	6.6	0.0	2.0	1	1	1	2	2	2	0	rRNA	processing/ribosome	biogenesis
Rrf2	PF02082.20	gi|408403237|ref|YP_006861220.1|	-	0.067	13.5	0.0	0.12	12.7	0.0	1.3	1	0	0	1	1	1	0	Transcriptional	regulator
Mrr_N	PF14338.6	gi|408403237|ref|YP_006861220.1|	-	0.082	13.0	0.1	0.13	12.4	0.1	1.5	1	1	0	1	1	1	0	Mrr	N-terminal	domain
DUF2532	PF10811.8	gi|408403237|ref|YP_006861220.1|	-	0.11	12.6	0.0	0.12	12.5	0.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2532)
DS	PF01916.17	gi|408403240|ref|YP_006861223.1|	-	1.5e-100	336.2	0.0	1.7e-100	336.0	0.0	1.0	1	0	0	1	1	1	1	Deoxyhypusine	synthase
Hpre_diP_synt_I	PF07456.11	gi|408403240|ref|YP_006861223.1|	-	0.072	13.1	0.0	0.13	12.3	0.0	1.3	1	0	0	1	1	1	0	Heptaprenyl	diphosphate	synthase	component	I
Na_H_Exchanger	PF00999.21	gi|408403241|ref|YP_006861224.1|	-	1.8e-10	40.1	5.2	1.9e-10	40.1	5.2	1.0	1	0	0	1	1	1	1	Sodium/hydrogen	exchanger	family
BTP	PF05232.12	gi|408403241|ref|YP_006861224.1|	-	0.78	9.9	7.1	0.97	9.6	2.0	2.1	2	0	0	2	2	2	0	Chlorhexidine	efflux	transporter
Na_H_Exchanger	PF00999.21	gi|408403242|ref|YP_006861225.1|	-	9.5e-37	126.7	24.0	1.1e-36	126.5	24.0	1.0	1	0	0	1	1	1	1	Sodium/hydrogen	exchanger	family
DS	PF01916.17	gi|408403243|ref|YP_006861226.1|	-	6.6e-76	255.3	0.0	7.8e-76	255.1	0.0	1.0	1	0	0	1	1	1	1	Deoxyhypusine	synthase
NAD_binding_1	PF00175.21	gi|408403246|ref|YP_006861229.1|	-	5.2e-09	36.7	0.0	7.3e-09	36.2	0.0	1.2	1	1	0	1	1	1	1	Oxidoreductase	NAD-binding	domain
DUF3412	PF11892.8	gi|408403246|ref|YP_006861229.1|	-	0.011	15.8	0.0	0.012	15.7	0.0	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3412)
DUF608	PF04685.13	gi|408403247|ref|YP_006861230.1|	-	1.8e-07	30.6	0.0	2.7e-07	30.1	0.0	1.2	1	0	0	1	1	1	1	Glycosyl-hydrolase	family	116,	catalytic	region
GDE_C	PF06202.14	gi|408403247|ref|YP_006861230.1|	-	3.9e-05	22.8	0.1	0.014	14.3	0.0	2.5	1	1	0	2	2	2	2	Amylo-alpha-1,6-glucosidase
Trehalase	PF01204.18	gi|408403247|ref|YP_006861230.1|	-	0.023	13.6	0.4	0.21	10.3	0.1	1.9	1	1	1	2	2	2	0	Trehalase
Glyco_hydro_63	PF03200.16	gi|408403247|ref|YP_006861230.1|	-	0.026	13.3	0.1	0.23	10.2	0.1	2.0	2	0	0	2	2	2	0	Glycosyl	hydrolase	family	63	C-terminal	domain
Bac_rhamnosid6H	PF17389.2	gi|408403247|ref|YP_006861230.1|	-	0.031	13.5	0.0	0.045	13.0	0.0	1.3	1	0	0	1	1	1	0	Bacterial	alpha-L-rhamnosidase	6	hairpin	glycosidase	domain
POTRA_TamA_1	PF17243.2	gi|408403247|ref|YP_006861230.1|	-	0.073	13.2	0.1	0.25	11.5	0.0	1.9	2	0	0	2	2	2	0	POTRA	domain	TamA	domain	1
Glyco_hydro_36	PF17167.4	gi|408403247|ref|YP_006861230.1|	-	0.096	11.4	0.1	0.56	8.8	0.0	2.0	2	0	0	2	2	2	0	Glycosyl	hydrolase	36	superfamily,	catalytic	domain
zf-C2H2_4	PF13894.6	gi|408403248|ref|YP_006861231.1|	-	8.4e-05	23.1	0.2	0.00012	22.7	0.2	1.2	1	0	0	1	1	1	1	C2H2-type	zinc	finger
zf-C2H2_11	PF16622.5	gi|408403248|ref|YP_006861231.1|	-	0.00013	21.7	0.5	0.00017	21.3	0.5	1.1	1	0	0	1	1	1	1	zinc-finger	C2H2-type
zf-C2H2	PF00096.26	gi|408403248|ref|YP_006861231.1|	-	0.00014	22.1	0.3	0.00019	21.7	0.3	1.2	1	0	0	1	1	1	1	Zinc	finger,	C2H2	type
Zn-ribbon_8	PF09723.10	gi|408403248|ref|YP_006861231.1|	-	0.00093	19.3	0.2	0.0012	19.0	0.2	1.3	1	1	0	1	1	1	1	Zinc	ribbon	domain
DUF629	PF04780.12	gi|408403248|ref|YP_006861231.1|	-	0.0037	15.9	0.0	0.0037	15.9	0.0	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF629)
Actin_micro	PF17003.5	gi|408403248|ref|YP_006861231.1|	-	0.02	14.1	0.1	0.02	14.1	0.1	1.0	1	0	0	1	1	1	0	Putative	actin-like	family
zf-C2H2_2	PF12756.7	gi|408403248|ref|YP_006861231.1|	-	0.032	14.5	0.1	0.032	14.5	0.1	1.1	1	0	0	1	1	1	0	C2H2	type	zinc-finger	(2	copies)
zf_ZIC	PF18366.1	gi|408403248|ref|YP_006861231.1|	-	0.033	14.3	0.0	0.045	13.9	0.0	1.2	1	0	0	1	1	1	0	Zic	proteins	zinc	finger	domain
zf-C2H2_3rep	PF18868.1	gi|408403248|ref|YP_006861231.1|	-	0.05	14.3	0.1	0.063	14.0	0.1	1.2	1	0	0	1	1	1	0	Zinc	finger	C2H2-type,	3	repeats
zf-C2HE	PF16278.5	gi|408403248|ref|YP_006861231.1|	-	0.071	13.6	0.2	0.099	13.1	0.2	1.3	1	0	0	1	1	1	0	C2HE	/	C2H2	/	C2HC	zinc-binding	finger
zf-C2H2_6	PF13912.6	gi|408403248|ref|YP_006861231.1|	-	0.096	12.7	1.3	0.15	12.1	1.1	1.5	1	1	0	1	1	1	0	C2H2-type	zinc	finger
zf-C2H2_9	PF16293.5	gi|408403248|ref|YP_006861231.1|	-	0.15	11.9	0.0	0.18	11.6	0.0	1.2	1	0	0	1	1	1	0	C2H2	type	zinc-finger	(1	copy)
NAD_binding_2	PF03446.15	gi|408403249|ref|YP_006861232.1|	-	1.8e-33	116.0	0.0	2.7e-33	115.4	0.0	1.3	1	0	0	1	1	1	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
6PGD	PF00393.19	gi|408403249|ref|YP_006861232.1|	-	2.3e-18	66.6	0.0	3.1e-18	66.2	0.0	1.1	1	0	0	1	1	1	1	6-phosphogluconate	dehydrogenase,	C-terminal	domain
2-Hacid_dh_C	PF02826.19	gi|408403249|ref|YP_006861232.1|	-	6.5e-05	22.4	0.0	9.6e-05	21.8	0.0	1.3	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
F420_oxidored	PF03807.17	gi|408403249|ref|YP_006861232.1|	-	0.0061	17.1	0.0	0.01	16.4	0.0	1.4	1	0	0	1	1	1	1	NADP	oxidoreductase	coenzyme	F420-dependent
GFO_IDH_MocA	PF01408.22	gi|408403249|ref|YP_006861232.1|	-	0.097	13.5	0.0	0.15	12.9	0.0	1.3	1	0	0	1	1	1	0	Oxidoreductase	family,	NAD-binding	Rossmann	fold
DUF4350	PF14258.6	gi|408403249|ref|YP_006861232.1|	-	0.1	13.0	0.1	0.26	11.7	0.1	1.6	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4350)
Cupin_2	PF07883.11	gi|408403250|ref|YP_006861233.1|	-	3.4e-15	55.5	0.1	5.5e-15	54.8	0.1	1.4	1	0	0	1	1	1	1	Cupin	domain
Cupin_1	PF00190.22	gi|408403250|ref|YP_006861233.1|	-	5.5e-08	32.5	0.0	7.5e-08	32.1	0.0	1.2	1	0	0	1	1	1	1	Cupin
AraC_binding	PF02311.19	gi|408403250|ref|YP_006861233.1|	-	2e-07	31.0	0.1	3.3e-07	30.3	0.1	1.3	1	0	0	1	1	1	1	AraC-like	ligand	binding	domain
MannoseP_isomer	PF01050.18	gi|408403250|ref|YP_006861233.1|	-	3.6e-07	30.2	0.0	4.5e-07	29.9	0.0	1.1	1	0	0	1	1	1	1	Mannose-6-phosphate	isomerase
Cupin_3	PF05899.12	gi|408403250|ref|YP_006861233.1|	-	3.1e-06	26.8	0.1	9.7e-06	25.2	0.1	1.8	2	1	0	2	2	2	1	Protein	of	unknown	function	(DUF861)
DMSP_lyase	PF16867.5	gi|408403250|ref|YP_006861233.1|	-	2.6e-05	23.9	0.0	3.5e-05	23.5	0.0	1.2	1	0	0	1	1	1	1	Dimethlysulfonioproprionate	lyase
ARD	PF03079.14	gi|408403250|ref|YP_006861233.1|	-	0.00066	19.9	0.0	0.00072	19.8	0.0	1.2	1	0	0	1	1	1	1	ARD/ARD'	family
Cupin_7	PF12973.7	gi|408403250|ref|YP_006861233.1|	-	0.0036	17.2	0.0	0.005	16.7	0.0	1.2	1	0	0	1	1	1	1	ChrR	Cupin-like	domain
CENP-C_C	PF11699.8	gi|408403250|ref|YP_006861233.1|	-	0.0047	17.1	0.0	0.0076	16.4	0.0	1.4	1	1	0	1	1	1	1	Mif2/CENP-C	like
EutQ	PF06249.12	gi|408403250|ref|YP_006861233.1|	-	0.039	13.7	0.1	0.052	13.3	0.1	1.2	1	0	0	1	1	1	0	Ethanolamine	utilisation	protein	EutQ
Pirin_C	PF05726.13	gi|408403250|ref|YP_006861233.1|	-	0.073	13.4	0.0	0.11	12.8	0.0	1.2	1	0	0	1	1	1	0	Pirin	C-terminal	cupin	domain
Asp_Arg_Hydrox	PF05118.15	gi|408403250|ref|YP_006861233.1|	-	0.096	12.5	0.0	0.15	11.9	0.0	1.5	1	1	0	1	1	1	0	Aspartyl/Asparaginyl	beta-hydroxylase
Cyclase	PF04199.13	gi|408403251|ref|YP_006861234.1|	-	3.7e-30	104.9	0.2	5.8e-30	104.3	0.2	1.3	1	0	0	1	1	1	1	Putative	cyclase
Rib_5-P_isom_A	PF06026.14	gi|408403252|ref|YP_006861235.1|	-	6.2e-52	175.7	0.0	8.2e-52	175.3	0.0	1.1	1	0	0	1	1	1	1	Ribose	5-phosphate	isomerase	A	(phosphoriboisomerase	A)
DeoRC	PF00455.22	gi|408403252|ref|YP_006861235.1|	-	0.026	14.4	0.1	2.5	8.0	0.0	2.1	1	1	1	2	2	2	0	DeoR	C	terminal	sensor	domain
Sugar-bind	PF04198.13	gi|408403252|ref|YP_006861235.1|	-	0.16	11.1	0.0	0.29	10.2	0.0	1.4	1	0	0	1	1	1	0	Putative	sugar-binding	domain
Bac_luciferase	PF00296.20	gi|408403253|ref|YP_006861236.1|	-	1.4e-54	185.6	0.4	1.7e-54	185.4	0.4	1.1	1	0	0	1	1	1	1	Luciferase-like	monooxygenase
DUF4005	PF13178.6	gi|408403253|ref|YP_006861236.1|	-	0.059	14.0	0.0	0.14	12.9	0.0	1.6	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF4005)
LigT_PEase	PF02834.16	gi|408403254|ref|YP_006861237.1|	-	1e-24	86.5	0.0	5.8e-14	52.1	0.0	2.1	2	0	0	2	2	2	2	LigT	like	Phosphoesterase
2_5_RNA_ligase2	PF13563.6	gi|408403254|ref|YP_006861237.1|	-	2.5e-11	43.7	0.0	3.9e-11	43.1	0.0	1.4	1	1	0	1	1	1	1	2'-5'	RNA	ligase	superfamily
AKAP7_NLS	PF10469.9	gi|408403254|ref|YP_006861237.1|	-	1.6e-10	41.2	0.0	2.1e-10	40.8	0.0	1.2	1	0	0	1	1	1	1	AKAP7	2'5'	RNA	ligase-like	domain
tRNA_NucTransf2	PF09249.11	gi|408403255|ref|YP_006861238.1|	-	1.7e-37	128.1	0.0	4.5e-37	126.8	0.0	1.8	1	0	0	1	1	1	1	tRNA	nucleotidyltransferase,	second	domain
NTP_transf_2	PF01909.23	gi|408403255|ref|YP_006861238.1|	-	1.1e-08	35.3	0.0	2.9e-08	33.9	0.0	1.7	1	0	0	1	1	1	1	Nucleotidyltransferase	domain
SMODS	PF18144.1	gi|408403255|ref|YP_006861238.1|	-	0.00093	19.4	0.0	0.0027	17.9	0.0	1.7	1	1	0	1	1	1	1	Second	Messenger	Oligonucleotide	or	Dinucleotide	Synthetase	domain
Polbeta	PF18765.1	gi|408403255|ref|YP_006861238.1|	-	0.06	13.4	0.0	0.14	12.3	0.0	1.5	1	0	0	1	1	1	0	Polymerase	beta,	Nucleotidyltransferase
RIO1	PF01163.22	gi|408403256|ref|YP_006861239.1|	-	9.9e-06	25.3	0.0	2.1e-05	24.2	0.0	1.6	2	0	0	2	2	2	1	RIO1	family
HhH-GPD	PF00730.25	gi|408403257|ref|YP_006861240.1|	-	7.4e-20	71.4	0.1	8.8e-19	68.0	0.0	2.0	2	0	0	2	2	2	1	HhH-GPD	superfamily	base	excision	DNA	repair	protein
HHH	PF00633.23	gi|408403257|ref|YP_006861240.1|	-	0.032	14.1	0.0	0.087	12.7	0.0	1.8	1	0	0	1	1	1	0	Helix-hairpin-helix	motif
Tho2	PF11262.8	gi|408403257|ref|YP_006861240.1|	-	0.045	12.9	0.0	0.062	12.5	0.0	1.1	1	0	0	1	1	1	0	Transcription	factor/nuclear	export	subunit	protein	2
DUF977	PF06163.11	gi|408403257|ref|YP_006861240.1|	-	0.15	12.0	0.0	0.33	10.9	0.0	1.5	1	0	0	1	1	1	0	Bacterial	protein	of	unknown	function	(DUF977)
TFIIE_alpha	PF02002.17	gi|408403258|ref|YP_006861241.1|	-	0.02	14.7	3.6	0.049	13.5	0.4	2.6	1	1	2	3	3	3	0	TFIIE	alpha	subunit
DUF4374	PF14298.6	gi|408403258|ref|YP_006861241.1|	-	0.022	13.6	0.0	0.025	13.4	0.0	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4374)
XRCC4	PF06632.12	gi|408403258|ref|YP_006861241.1|	-	0.058	12.2	0.6	0.97	8.2	0.1	2.0	1	1	1	2	2	2	0	DNA	double-strand	break	repair	and	V(D)J	recombination	protein	XRCC4
Ribosomal_L2_C	PF03947.18	gi|408403259|ref|YP_006861242.1|	-	3.8e-38	130.5	3.0	6.7e-38	129.7	3.0	1.5	1	0	0	1	1	1	1	Ribosomal	Proteins	L2,	C-terminal	domain
Ribosomal_L2	PF00181.23	gi|408403259|ref|YP_006861242.1|	-	2.8e-11	43.2	0.1	7.6e-11	41.8	0.1	1.8	1	0	0	1	1	1	1	Ribosomal	Proteins	L2,	RNA	binding	domain
Glyoxalase	PF00903.25	gi|408403260|ref|YP_006861243.1|	-	1.4e-11	44.7	0.0	2.4e-11	43.9	0.0	1.4	1	1	0	1	1	1	1	Glyoxalase/Bleomycin	resistance	protein/Dioxygenase	superfamily
Glyoxalase_6	PF18029.1	gi|408403260|ref|YP_006861243.1|	-	2.1e-08	34.9	0.0	3.2e-08	34.3	0.0	1.2	1	0	0	1	1	1	1	Glyoxalase-like	domain
Glyoxalase_4	PF13669.6	gi|408403260|ref|YP_006861243.1|	-	0.0094	16.2	0.0	0.015	15.5	0.0	1.4	1	0	0	1	1	1	1	Glyoxalase/Bleomycin	resistance	protein/Dioxygenase	superfamily
TPR_8	PF13181.6	gi|408403260|ref|YP_006861243.1|	-	0.99	9.8	2.8	3.7	8.0	0.2	2.7	3	0	0	3	3	3	0	Tetratricopeptide	repeat
NIR_SIR	PF01077.22	gi|408403261|ref|YP_006861244.1|	-	6.5e-46	155.7	0.0	3e-33	114.6	0.0	2.7	3	0	0	3	3	3	2	Nitrite	and	sulphite	reductase	4Fe-4S	domain
NIR_SIR_ferr	PF03460.17	gi|408403261|ref|YP_006861244.1|	-	1.5e-32	111.3	0.0	7.1e-19	67.4	0.0	2.5	2	0	0	2	2	2	2	Nitrite/Sulfite	reductase	ferredoxin-like	half	domain
Rhodanese	PF00581.20	gi|408403262|ref|YP_006861245.1|	-	2.5e-33	114.8	0.0	8.3e-16	58.5	0.0	2.2	2	0	0	2	2	2	2	Rhodanese-like	domain
DUF1902	PF08972.11	gi|408403262|ref|YP_006861245.1|	-	0.13	12.3	0.0	2.1	8.4	0.0	2.3	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF1902)
LSDAT_euk	PF18139.1	gi|408403262|ref|YP_006861245.1|	-	0.14	11.5	0.0	0.2	11.0	0.0	1.2	1	0	0	1	1	1	0	SLOG	in	TRPM
AAA_17	PF13207.6	gi|408403263|ref|YP_006861246.1|	-	3.3e-17	63.2	0.1	5.4e-17	62.5	0.1	1.3	1	0	0	1	1	1	1	AAA	domain
AAA_18	PF13238.6	gi|408403263|ref|YP_006861246.1|	-	3.5e-15	56.7	0.0	5.9e-15	56.0	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
ADK	PF00406.22	gi|408403263|ref|YP_006861246.1|	-	0.00014	22.0	0.3	0.0002	21.5	0.3	1.3	1	1	0	1	1	1	1	Adenylate	kinase
AAA_28	PF13521.6	gi|408403263|ref|YP_006861246.1|	-	0.00024	21.4	0.0	0.00039	20.7	0.0	1.4	1	0	0	1	1	1	1	AAA	domain
AAA_33	PF13671.6	gi|408403263|ref|YP_006861246.1|	-	0.00034	20.8	0.2	0.0015	18.7	0.2	1.9	1	1	0	1	1	1	1	AAA	domain
CoaE	PF01121.20	gi|408403263|ref|YP_006861246.1|	-	0.0013	18.5	0.2	0.01	15.5	0.1	2.1	2	0	0	2	2	2	1	Dephospho-CoA	kinase
APS_kinase	PF01583.20	gi|408403263|ref|YP_006861246.1|	-	0.0022	17.9	0.1	0.0045	16.9	0.0	1.5	2	0	0	2	2	2	1	Adenylylsulphate	kinase
AAA_22	PF13401.6	gi|408403263|ref|YP_006861246.1|	-	0.0047	17.2	0.2	0.0078	16.5	0.2	1.7	1	1	0	1	1	1	1	AAA	domain
Zeta_toxin	PF06414.12	gi|408403263|ref|YP_006861246.1|	-	0.0079	15.5	0.1	0.027	13.7	0.1	1.8	2	0	0	2	2	2	1	Zeta	toxin
NTPase_1	PF03266.15	gi|408403263|ref|YP_006861246.1|	-	0.011	15.7	0.2	0.022	14.7	0.2	1.7	1	1	0	1	1	1	0	NTPase
ABC_tran	PF00005.27	gi|408403263|ref|YP_006861246.1|	-	0.012	16.1	0.0	0.032	14.8	0.0	1.7	1	1	0	1	1	1	0	ABC	transporter
MeaB	PF03308.16	gi|408403263|ref|YP_006861246.1|	-	0.018	14.1	0.2	0.04	12.9	0.1	1.6	2	0	0	2	2	2	0	Methylmalonyl	Co-A	mutase-associated	GTPase	MeaB
Torsin	PF06309.11	gi|408403263|ref|YP_006861246.1|	-	0.021	14.9	0.0	0.088	12.9	0.0	1.9	1	1	1	2	2	2	0	Torsin
AAA_16	PF13191.6	gi|408403263|ref|YP_006861246.1|	-	0.05	14.0	0.5	0.08	13.3	0.5	1.8	1	1	0	1	1	1	0	AAA	ATPase	domain
KTI12	PF08433.10	gi|408403263|ref|YP_006861246.1|	-	0.062	12.7	0.1	0.17	11.3	0.0	1.7	2	0	0	2	2	2	0	Chromatin	associated	protein	KTI12
NB-ARC	PF00931.22	gi|408403263|ref|YP_006861246.1|	-	0.077	12.2	0.1	0.12	11.6	0.1	1.2	1	0	0	1	1	1	0	NB-ARC	domain
dNK	PF01712.19	gi|408403263|ref|YP_006861246.1|	-	0.19	11.5	0.0	0.31	10.9	0.0	1.4	1	0	0	1	1	1	0	Deoxynucleoside	kinase
RNA_binding	PF01877.17	gi|408403264|ref|YP_006861247.1|	-	3.4e-08	33.8	0.0	1.3e-07	31.9	0.0	1.7	1	1	0	1	1	1	1	RNA	binding
zf-ribbon_3	PF13248.6	gi|408403265|ref|YP_006861248.1|	-	0.0098	15.3	1.7	1.3	8.5	0.3	2.2	2	0	0	2	2	2	2	zinc-ribbon	domain
GFA	PF04828.14	gi|408403265|ref|YP_006861248.1|	-	0.021	15.1	2.3	0.061	13.7	2.3	1.7	1	1	0	1	1	1	0	Glutathione-dependent	formaldehyde-activating	enzyme
TF_Zn_Ribbon	PF08271.12	gi|408403265|ref|YP_006861248.1|	-	0.032	13.7	1.5	0.94	9.0	0.3	2.1	2	0	0	2	2	2	0	TFIIB	zinc-binding
DZR	PF12773.7	gi|408403265|ref|YP_006861248.1|	-	0.058	13.4	3.1	0.12	12.4	3.1	1.5	1	1	0	1	1	1	0	Double	zinc	ribbon
HypA	PF01155.19	gi|408403265|ref|YP_006861248.1|	-	0.06	13.4	1.0	0.068	13.2	1.0	1.1	1	0	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
Zn_ribbon_SprT	PF17283.2	gi|408403265|ref|YP_006861248.1|	-	0.076	12.9	1.1	9	6.3	0.1	2.1	2	0	0	2	2	2	0	SprT-like	zinc	ribbon	domain
zf-NADH-PPase	PF09297.11	gi|408403265|ref|YP_006861248.1|	-	0.077	12.7	0.1	0.077	12.7	0.1	1.6	2	0	0	2	2	2	0	NADH	pyrophosphatase	zinc	ribbon	domain
zinc_ribbon_2	PF13240.6	gi|408403265|ref|YP_006861248.1|	-	0.08	12.7	2.8	0.81	9.5	0.2	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
Cys_rich_KTR	PF14205.6	gi|408403265|ref|YP_006861248.1|	-	0.16	11.8	3.5	5.2	7.0	0.4	2.2	2	0	0	2	2	2	0	Cysteine-rich	KTR
zf-Di19	PF05605.12	gi|408403265|ref|YP_006861248.1|	-	0.22	11.9	3.0	0.94	9.8	3.1	1.8	1	1	0	1	1	1	0	Drought	induced	19	protein	(Di19),	zinc-binding
YdjO	PF14169.6	gi|408403265|ref|YP_006861248.1|	-	0.23	11.2	4.6	1.1	9.0	0.2	2.1	1	1	1	2	2	2	0	Cold-inducible	protein	YdjO
ADK_lid	PF05191.14	gi|408403265|ref|YP_006861248.1|	-	0.49	10.4	4.5	1.5	8.9	4.5	1.8	1	1	0	1	1	1	0	Adenylate	kinase,	active	site	lid
Auto_anti-p27	PF06677.12	gi|408403265|ref|YP_006861248.1|	-	1.3	9.2	7.3	2	8.6	0.5	2.3	1	1	0	2	2	2	0	Sjogren's	syndrome/scleroderma	autoantigen	1	(Autoantigen	p27)
ABC_tran	PF00005.27	gi|408403266|ref|YP_006861249.1|	-	4.5e-32	111.4	0.0	7.2e-32	110.8	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|408403266|ref|YP_006861249.1|	-	1.5e-08	34.8	0.1	2e-05	24.5	0.0	2.2	2	0	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
DUF4162	PF13732.6	gi|408403266|ref|YP_006861249.1|	-	7.9e-07	29.7	0.0	1.9e-06	28.5	0.0	1.7	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4162)
AAA_15	PF13175.6	gi|408403266|ref|YP_006861249.1|	-	9.8e-07	28.8	0.0	0.03	14.0	0.0	2.3	2	0	0	2	2	2	2	AAA	ATPase	domain
AAA	PF00004.29	gi|408403266|ref|YP_006861249.1|	-	0.0008	19.8	0.0	0.0081	16.6	0.0	2.5	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_29	PF13555.6	gi|408403266|ref|YP_006861249.1|	-	0.00089	19.0	0.2	0.0018	18.0	0.2	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_22	PF13401.6	gi|408403266|ref|YP_006861249.1|	-	0.0012	19.2	0.2	0.0051	17.1	0.2	1.9	1	1	0	1	1	1	1	AAA	domain
Zeta_toxin	PF06414.12	gi|408403266|ref|YP_006861249.1|	-	0.0021	17.4	0.0	0.29	10.4	0.0	2.4	2	0	0	2	2	2	1	Zeta	toxin
AAA_23	PF13476.6	gi|408403266|ref|YP_006861249.1|	-	0.0058	17.2	0.1	0.01	16.4	0.1	1.4	1	0	0	1	1	1	1	AAA	domain
SRP54	PF00448.22	gi|408403266|ref|YP_006861249.1|	-	0.0092	15.6	0.1	0.017	14.8	0.1	1.4	1	0	0	1	1	1	1	SRP54-type	protein,	GTPase	domain
G-alpha	PF00503.20	gi|408403266|ref|YP_006861249.1|	-	0.062	12.4	0.0	0.079	12.1	0.0	1.1	1	0	0	1	1	1	0	G-protein	alpha	subunit
Rad17	PF03215.15	gi|408403266|ref|YP_006861249.1|	-	0.087	12.7	0.0	0.13	12.2	0.0	1.3	1	0	0	1	1	1	0	Rad17	P-loop	domain
Mur_ligase_M	PF08245.12	gi|408403266|ref|YP_006861249.1|	-	0.12	12.3	0.0	0.22	11.5	0.0	1.4	1	0	0	1	1	1	0	Mur	ligase	middle	domain
AAA_30	PF13604.6	gi|408403266|ref|YP_006861249.1|	-	0.15	11.7	0.0	0.58	9.8	0.0	2.0	2	0	0	2	2	2	0	AAA	domain
MukB	PF04310.12	gi|408403266|ref|YP_006861249.1|	-	0.19	11.5	0.8	0.28	10.9	0.2	1.5	2	0	0	2	2	2	0	MukB	N-terminal
ABC2_membrane	PF01061.24	gi|408403267|ref|YP_006861250.1|	-	4.2e-38	130.9	17.9	5.6e-38	130.5	17.9	1.2	1	0	0	1	1	1	1	ABC-2	type	transporter
ABC2_membrane_3	PF12698.7	gi|408403267|ref|YP_006861250.1|	-	2e-14	53.5	23.2	2e-14	53.5	23.2	1.3	1	1	0	1	1	1	1	ABC-2	family	transporter	protein
ABC2_membrane_2	PF12679.7	gi|408403267|ref|YP_006861250.1|	-	1.1e-05	24.9	19.6	2.9e-05	23.5	19.6	1.8	1	1	0	1	1	1	1	ABC-2	family	transporter	protein
ABC2_membrane_4	PF12730.7	gi|408403267|ref|YP_006861250.1|	-	0.0085	16.1	10.5	0.025	14.5	10.5	1.7	1	1	0	1	1	1	1	ABC-2	family	transporter	protein
GcpE	PF04551.14	gi|408403268|ref|YP_006861251.1|	-	0.053	12.6	0.0	0.059	12.4	0.0	1.0	1	0	0	1	1	1	0	GcpE	protein
Iron_permease	PF04120.12	gi|408403271|ref|YP_006861254.1|	-	0.032	14.0	0.0	0.041	13.7	0.0	1.1	1	0	0	1	1	1	0	Low	affinity	iron	permease
TetR_C_17	PF17922.1	gi|408403271|ref|YP_006861254.1|	-	0.084	13.0	0.1	0.097	12.8	0.1	1.1	1	0	0	1	1	1	0	Tetracyclin	repressor-like,	C-terminal	domain
MetallophosC	PF16370.5	gi|408403271|ref|YP_006861254.1|	-	0.11	12.8	0.0	0.12	12.6	0.0	1.0	1	0	0	1	1	1	0	C	terminal	of	Calcineurin-like	phosphoesterase
KIF1B	PF12423.8	gi|408403271|ref|YP_006861254.1|	-	0.23	11.9	1.6	2.5	8.6	1.6	2.2	1	1	0	1	1	1	0	Kinesin	protein	1B
DUF5615	PF18480.1	gi|408403272|ref|YP_006861255.1|	-	1.2e-06	28.2	0.0	1.5e-06	27.8	0.0	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF5615)
PIN_10	PF18478.1	gi|408403272|ref|YP_006861255.1|	-	0.00036	20.7	0.0	0.00068	19.8	0.0	1.5	1	1	0	1	1	1	1	PIN	like	domain
DUF4162	PF13732.6	gi|408403272|ref|YP_006861255.1|	-	0.0084	16.8	0.0	0.012	16.3	0.0	1.3	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4162)
GRAM	PF02893.20	gi|408403275|ref|YP_006861258.1|	-	2.6e-05	24.0	0.0	3e-05	23.9	0.0	1.1	1	0	0	1	1	1	1	GRAM	domain
Vps36_ESCRT-II	PF11605.8	gi|408403275|ref|YP_006861258.1|	-	0.0004	20.5	0.0	0.00049	20.2	0.0	1.1	1	0	0	1	1	1	1	Vacuolar	protein	sorting	protein	36	Vps36
MazE_antitoxin	PF04014.18	gi|408403277|ref|YP_006861260.1|	-	0.004	17.0	0.1	0.0085	16.0	0.1	1.7	1	1	0	1	1	1	1	Antidote-toxin	recognition	MazE,	bacterial	antitoxin
AbiEi_1	PF09407.10	gi|408403278|ref|YP_006861261.1|	-	4.1e-07	30.4	0.0	1.3e-06	28.8	0.0	1.7	2	0	0	2	2	2	1	AbiEi	antitoxin	C-terminal	domain
AbiEi_4	PF13338.6	gi|408403278|ref|YP_006861261.1|	-	0.0014	18.7	0.0	0.0035	17.4	0.0	1.7	1	0	0	1	1	1	1	Transcriptional	regulator,	AbiEi	antitoxin
DUF2072	PF09845.9	gi|408403278|ref|YP_006861261.1|	-	0.15	12.3	0.0	6.2	7.1	0.0	2.3	2	0	0	2	2	2	0	Zn-ribbon	containing	protein
AbiEii	PF08843.11	gi|408403279|ref|YP_006861262.1|	-	4.5e-11	43.2	0.2	5.6e-11	42.8	0.2	1.2	1	0	0	1	1	1	1	Nucleotidyl	transferase	AbiEii	toxin,	Type	IV	TA	system
DUF1383	PF07134.11	gi|408403279|ref|YP_006861262.1|	-	0.11	11.5	0.0	0.15	11.2	0.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1383)
AbiEii	PF08843.11	gi|408403280|ref|YP_006861263.1|	-	3.9e-22	79.4	0.1	4.4e-22	79.2	0.1	1.0	1	0	0	1	1	1	1	Nucleotidyl	transferase	AbiEii	toxin,	Type	IV	TA	system
PrgI	PF12666.7	gi|408403281|ref|YP_006861264.1|	-	0.011	16.4	0.4	0.018	15.7	0.4	1.3	1	0	0	1	1	1	0	PrgI	family	protein
DUF2635	PF10948.8	gi|408403281|ref|YP_006861264.1|	-	0.031	14.0	0.0	0.08	12.7	0.0	1.6	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2635)
PCAF_N	PF06466.11	gi|408403282|ref|YP_006861265.1|	-	0.11	12.1	0.1	0.2	11.2	0.1	1.4	1	0	0	1	1	1	0	PCAF	(P300/CBP-associated	factor)	N-terminal	domain
AAA_10	PF12846.7	gi|408403284|ref|YP_006861267.1|	-	2.1e-09	36.8	0.1	1.6e-07	30.6	0.0	2.1	2	0	0	2	2	2	2	AAA-like	domain
TraG-D_C	PF12696.7	gi|408403284|ref|YP_006861267.1|	-	0.014	15.3	0.0	0.05	13.6	0.0	1.8	2	0	0	2	2	2	0	TraM	recognition	site	of	TraD	and	TraG
DUF87	PF01935.17	gi|408403284|ref|YP_006861267.1|	-	0.052	13.6	0.0	0.081	13.0	0.0	1.4	1	0	0	1	1	1	0	Helicase	HerA,	central	domain
WIYLD	PF10440.9	gi|408403284|ref|YP_006861267.1|	-	0.12	12.2	0.0	0.23	11.3	0.0	1.5	1	0	0	1	1	1	0	Ubiquitin-binding	WIYLD	domain
MCR_gamma	PF02240.16	gi|408403284|ref|YP_006861267.1|	-	0.18	11.0	0.0	0.3	10.3	0.0	1.3	1	0	0	1	1	1	0	Methyl-coenzyme	M	reductase	gamma	subunit
DUF4443	PF14544.6	gi|408403285|ref|YP_006861268.1|	-	0.007	16.6	0.0	0.011	15.9	0.0	1.3	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4443)
HTH_24	PF13412.6	gi|408403285|ref|YP_006861268.1|	-	0.02	14.4	0.1	0.04	13.5	0.1	1.5	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
DUF4093	PF13331.6	gi|408403285|ref|YP_006861268.1|	-	0.061	13.8	0.2	0.17	12.3	0.1	1.8	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4093)
HTH_45	PF14947.6	gi|408403285|ref|YP_006861268.1|	-	0.075	13.0	0.1	0.13	12.2	0.1	1.4	1	0	0	1	1	1	0	Winged	helix-turn-helix
DUF872	PF05915.12	gi|408403286|ref|YP_006861269.1|	-	0.041	14.0	0.2	0.041	14.0	0.2	1.1	1	0	0	1	1	1	0	Eukaryotic	protein	of	unknown	function	(DUF872)
Piezo_RRas_bdg	PF12166.8	gi|408403286|ref|YP_006861269.1|	-	0.079	12.2	0.2	0.087	12.1	0.2	1.0	1	0	0	1	1	1	0	Piezo	non-specific	cation	channel,	R-Ras-binding	domain
DUF2116	PF09889.9	gi|408403286|ref|YP_006861269.1|	-	0.11	12.5	1.9	0.13	12.2	1.9	1.2	1	0	0	1	1	1	0	Uncharacterized	protein	containing	a	Zn-ribbon	(DUF2116)
ATP1G1_PLM_MAT8	PF02038.16	gi|408403286|ref|YP_006861269.1|	-	0.2	11.1	0.9	0.3	10.5	0.9	1.4	1	0	0	1	1	1	0	ATP1G1/PLM/MAT8	family
ABC-3	PF00950.17	gi|408403287|ref|YP_006861270.1|	-	1.3e-68	231.3	32.8	1.5e-68	231.1	32.8	1.0	1	0	0	1	1	1	1	ABC	3	transport	family
FecCD	PF01032.18	gi|408403287|ref|YP_006861270.1|	-	4.7e-11	42.3	30.7	1.1e-10	41.0	30.7	1.7	1	1	0	1	1	1	1	FecCD	transport	family
DUF3671	PF12420.8	gi|408403287|ref|YP_006861270.1|	-	0.14	12.3	1.7	0.39	10.8	1.7	1.9	1	0	0	1	1	1	0	Protein	of	unknown	function
DUF3989	PF13150.6	gi|408403287|ref|YP_006861270.1|	-	0.18	11.6	1.2	12	5.7	0.4	2.6	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3989)
ABC_tran	PF00005.27	gi|408403288|ref|YP_006861271.1|	-	1.9e-26	93.2	0.0	3.5e-26	92.4	0.0	1.5	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|408403288|ref|YP_006861271.1|	-	3.5e-15	56.6	0.1	9.6e-09	35.5	0.0	2.1	2	0	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|408403288|ref|YP_006861271.1|	-	0.00059	19.3	0.1	0.43	10.0	0.0	2.1	2	0	0	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
AAA_22	PF13401.6	gi|408403288|ref|YP_006861271.1|	-	0.00074	19.8	0.7	0.011	16.0	0.7	2.1	1	1	0	1	1	1	1	AAA	domain
SbcCD_C	PF13558.6	gi|408403288|ref|YP_006861271.1|	-	0.00077	19.7	0.1	0.028	14.6	0.1	2.2	1	1	0	1	1	1	1	Putative	exonuclease	SbcCD,	C	subunit
AAA_23	PF13476.6	gi|408403288|ref|YP_006861271.1|	-	0.0016	19.0	0.2	0.0032	18.0	0.2	1.4	1	0	0	1	1	1	1	AAA	domain
AAA_29	PF13555.6	gi|408403288|ref|YP_006861271.1|	-	0.0056	16.4	0.1	0.012	15.4	0.1	1.5	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
T2SSE	PF00437.20	gi|408403288|ref|YP_006861271.1|	-	0.013	14.6	0.0	0.023	13.8	0.0	1.4	1	0	0	1	1	1	0	Type	II/IV	secretion	system	protein
NB-ARC	PF00931.22	gi|408403288|ref|YP_006861271.1|	-	0.022	14.0	1.0	0.078	12.2	1.0	1.8	1	1	0	1	1	1	0	NB-ARC	domain
AAA_30	PF13604.6	gi|408403288|ref|YP_006861271.1|	-	0.028	14.1	0.1	0.12	12.1	0.0	1.8	2	0	0	2	2	2	0	AAA	domain
AAA	PF00004.29	gi|408403288|ref|YP_006861271.1|	-	0.029	14.8	0.5	1.8	9.0	0.2	2.2	2	0	0	2	2	2	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
IstB_IS21	PF01695.17	gi|408403288|ref|YP_006861271.1|	-	0.03	14.1	1.4	0.74	9.5	0.0	2.2	2	0	0	2	2	2	0	IstB-like	ATP	binding	protein
AAA_18	PF13238.6	gi|408403288|ref|YP_006861271.1|	-	0.03	14.9	0.0	0.084	13.4	0.0	1.8	2	0	0	2	2	2	0	AAA	domain
RecA	PF00154.21	gi|408403288|ref|YP_006861271.1|	-	0.074	12.5	0.0	0.11	11.9	0.0	1.2	1	0	0	1	1	1	0	recA	bacterial	DNA	recombination	protein
NACHT	PF05729.12	gi|408403288|ref|YP_006861271.1|	-	0.082	12.8	0.1	0.19	11.7	0.1	1.6	1	0	0	1	1	1	0	NACHT	domain
AAA_16	PF13191.6	gi|408403288|ref|YP_006861271.1|	-	0.083	13.3	0.1	0.16	12.4	0.1	1.4	1	0	0	1	1	1	0	AAA	ATPase	domain
ATPase_2	PF01637.18	gi|408403288|ref|YP_006861271.1|	-	0.084	12.8	0.2	0.22	11.4	0.2	1.8	1	1	0	1	1	1	0	ATPase	domain	predominantly	from	Archaea
RsgA_GTPase	PF03193.16	gi|408403288|ref|YP_006861271.1|	-	0.14	12.1	0.0	0.29	11.0	0.0	1.6	1	0	0	1	1	1	0	RsgA	GTPase
G-alpha	PF00503.20	gi|408403288|ref|YP_006861271.1|	-	0.14	11.3	0.0	0.38	9.9	0.0	1.6	2	0	0	2	2	2	0	G-protein	alpha	subunit
cobW	PF02492.19	gi|408403288|ref|YP_006861271.1|	-	0.16	11.6	0.5	0.37	10.3	0.3	1.6	2	0	0	2	2	2	0	CobW/HypB/UreG,	nucleotide-binding	domain
Zot	PF05707.12	gi|408403288|ref|YP_006861271.1|	-	0.19	11.3	0.0	0.34	10.5	0.0	1.5	1	0	0	1	1	1	0	Zonular	occludens	toxin	(Zot)
AAA_24	PF13479.6	gi|408403288|ref|YP_006861271.1|	-	0.58	9.8	1.7	0.69	9.6	0.3	1.7	2	0	0	2	2	2	0	AAA	domain
ZnuA	PF01297.17	gi|408403289|ref|YP_006861272.1|	-	2.3e-74	250.0	0.0	2.7e-74	249.8	0.0	1.0	1	0	0	1	1	1	1	Zinc-uptake	complex	component	A	periplasmic
PMP22_Claudin	PF00822.20	gi|408403290|ref|YP_006861273.1|	-	0.0033	17.3	6.1	0.0044	16.9	6.1	1.3	1	1	0	1	1	1	1	PMP-22/EMP/MP20/Claudin	family
NicO	PF03824.16	gi|408403291|ref|YP_006861274.1|	-	1.4e-05	24.6	12.0	1.4e-05	24.6	12.0	1.7	2	1	0	2	2	2	1	High-affinity	nickel-transport	protein
DUF2244	PF10003.9	gi|408403291|ref|YP_006861274.1|	-	0.25	11.0	0.0	0.25	11.0	0.0	2.7	3	1	1	4	4	4	0	Integral	membrane	protein	(DUF2244)
TNFR_16_TM	PF18422.1	gi|408403291|ref|YP_006861274.1|	-	0.63	10.1	0.0	0.63	10.1	0.0	3.1	4	0	0	4	4	4	0	Tumor	necrosis	factor	receptor	member	16	trans-membrane	domain
NikR_C	PF08753.11	gi|408403292|ref|YP_006861275.1|	-	4.3e-27	94.1	2.7	2.8e-26	91.5	2.7	1.9	2	0	0	2	2	2	1	NikR	C	terminal	nickel	binding	domain
ChuX_HutX	PF06228.13	gi|408403292|ref|YP_006861275.1|	-	0.067	13.0	0.0	0.076	12.8	0.0	1.1	1	0	0	1	1	1	0	Haem	utilisation	ChuX/HutX
SBP_bac_5	PF00496.22	gi|408403293|ref|YP_006861276.1|	-	1.6e-41	142.5	0.0	2.1e-41	142.1	0.0	1.0	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	proteins,	family	5	Middle
ThiC_Rad_SAM	PF01964.18	gi|408403294|ref|YP_006861277.1|	-	7.5e-168	558.6	0.5	8.7e-168	558.4	0.5	1.0	1	0	0	1	1	1	1	Radical	SAM	ThiC	family
Rossmann-like	PF10727.9	gi|408403294|ref|YP_006861277.1|	-	0.044	13.7	0.5	0.099	12.5	0.5	1.6	1	0	0	1	1	1	0	Rossmann-like	domain
Spore_GerAC	PF05504.11	gi|408403294|ref|YP_006861277.1|	-	0.062	13.5	1.2	0.18	12.0	0.3	2.1	2	0	0	2	2	2	0	Spore	germination	B3/	GerAC	like,	C-terminal
CnrY	PF17524.2	gi|408403294|ref|YP_006861277.1|	-	0.11	12.7	0.0	1.8	8.8	0.0	2.5	2	0	0	2	2	2	0	Anti-sigma	factor	CnrY
GAS	PF13851.6	gi|408403295|ref|YP_006861278.1|	-	0.012	15.0	0.4	0.69	9.2	0.0	2.0	2	0	0	2	2	2	0	Growth-arrest	specific	micro-tubule	binding
Med9	PF07544.13	gi|408403295|ref|YP_006861278.1|	-	0.04	14.0	0.4	0.12	12.4	0.1	1.8	2	0	0	2	2	2	0	RNA	polymerase	II	transcription	mediator	complex	subunit	9
K-box	PF01486.17	gi|408403295|ref|YP_006861278.1|	-	0.1	12.8	2.5	1	9.6	0.4	2.1	2	0	0	2	2	2	0	K-box	region
Takusan	PF04822.13	gi|408403295|ref|YP_006861278.1|	-	0.19	11.6	2.5	3.4	7.6	0.3	2.1	2	0	0	2	2	2	0	Takusan
BLOC1_2	PF10046.9	gi|408403295|ref|YP_006861278.1|	-	0.74	10.2	4.2	1.4	9.2	0.4	2.1	2	0	0	2	2	2	0	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
Peptidase_A24	PF01478.18	gi|408403296|ref|YP_006861279.1|	-	9.9e-09	35.6	10.1	9.9e-09	35.6	10.1	1.9	2	0	0	2	2	2	1	Type	IV	leader	peptidase	family
Arc_PepC_II	PF06847.11	gi|408403296|ref|YP_006861279.1|	-	9.6e-06	26.0	0.0	1.9e-05	25.1	0.0	1.6	1	0	0	1	1	1	1	Archaeal	Peptidase	A24	C-terminus	Type	II
CbiN	PF02553.15	gi|408403296|ref|YP_006861279.1|	-	0.00096	19.1	0.2	0.0026	17.7	0.2	1.8	1	1	0	1	1	1	1	Cobalt	transport	protein	component	CbiN
ParD_antitoxin	PF03693.14	gi|408403297|ref|YP_006861280.1|	-	0.0088	16.4	0.0	0.012	16.0	0.0	1.1	1	0	0	1	1	1	1	Bacterial	antitoxin	of	ParD	toxin-antitoxin	type	II	system	and	RHH
TcA_TcB_BD	PF18276.1	gi|408403297|ref|YP_006861280.1|	-	0.009	15.1	0.2	0.0091	15.1	0.2	1.1	1	0	0	1	1	1	1	Tc	toxin	complex	TcA	C-terminal	TcB-binding	domain
TTRAP	PF14203.6	gi|408403297|ref|YP_006861280.1|	-	0.016	15.2	0.4	0.11	12.5	0.3	1.9	2	0	0	2	2	2	0	Putative	tranposon-transfer	assisting	protein
zf_C2H2_6	PF18450.1	gi|408403299|ref|YP_006861282.1|	-	1.2	8.9	4.7	0.69	9.7	1.4	2.1	2	0	0	2	2	2	0	Zinc	Finger	domain
dCache_1	PF02743.18	gi|408403300|ref|YP_006861283.1|	-	0.046	13.5	0.0	0.047	13.5	0.0	1.1	1	0	0	1	1	1	0	Cache	domain
Glyco_hydro_71	PF03659.14	gi|408403300|ref|YP_006861283.1|	-	0.18	10.6	0.0	0.25	10.1	0.0	1.1	1	0	0	1	1	1	0	Glycosyl	hydrolase	family	71
Epimerase	PF01370.21	gi|408403302|ref|YP_006861285.1|	-	2.3e-08	33.8	0.0	2.9e-08	33.5	0.0	1.1	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
3Beta_HSD	PF01073.19	gi|408403302|ref|YP_006861285.1|	-	9e-06	24.9	0.0	1.2e-05	24.5	0.0	1.1	1	0	0	1	1	1	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
KR	PF08659.10	gi|408403302|ref|YP_006861285.1|	-	2.6e-05	24.2	0.2	0.0016	18.4	0.2	2.5	1	1	0	1	1	1	1	KR	domain
adh_short	PF00106.25	gi|408403302|ref|YP_006861285.1|	-	3e-05	23.5	0.0	4.5e-05	23.0	0.0	1.4	1	1	0	1	1	1	1	short	chain	dehydrogenase
RmlD_sub_bind	PF04321.17	gi|408403302|ref|YP_006861285.1|	-	0.00036	19.7	0.0	0.00044	19.4	0.0	1.1	1	0	0	1	1	1	1	RmlD	substrate	binding	domain
GDP_Man_Dehyd	PF16363.5	gi|408403302|ref|YP_006861285.1|	-	0.0052	16.2	0.0	0.0078	15.6	0.0	1.3	1	0	0	1	1	1	1	GDP-mannose	4,6	dehydratase
Transketolase_C	PF02780.20	gi|408403302|ref|YP_006861285.1|	-	0.095	12.6	0.0	0.19	11.6	0.0	1.5	1	0	0	1	1	1	0	Transketolase,	C-terminal	domain
adh_short_C2	PF13561.6	gi|408403302|ref|YP_006861285.1|	-	0.1	12.1	0.0	0.16	11.5	0.0	1.3	1	1	0	1	1	1	0	Enoyl-(Acyl	carrier	protein)	reductase
DUF4574	PF15141.6	gi|408403303|ref|YP_006861286.1|	-	0.00033	20.5	3.2	0.00033	20.5	3.2	1.9	1	1	1	2	2	2	1	Ubiquinol-cytochrome-c	reductase	complex	assembly	factor	3
GerD	PF17898.1	gi|408403303|ref|YP_006861286.1|	-	0.0018	18.2	25.0	0.0051	16.8	25.0	1.8	1	1	0	1	1	1	1	Spore	germination	GerD	central	core	domain
HemX	PF04375.14	gi|408403303|ref|YP_006861286.1|	-	0.0028	17.0	2.7	0.0039	16.5	2.7	1.2	1	0	0	1	1	1	1	HemX,	putative	uroporphyrinogen-III	C-methyltransferase
Bep_C_terminal	PF17841.1	gi|408403303|ref|YP_006861286.1|	-	0.0095	16.1	4.4	0.028	14.6	0.0	2.7	1	1	2	3	3	3	2	BID	domain	of	Bartonella	effector	protein	(Bep)
DUF4214	PF13946.6	gi|408403303|ref|YP_006861286.1|	-	0.075	13.1	4.7	1.1	9.4	0.9	2.6	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4214)
Methyltrn_RNA_4	PF09936.9	gi|408403303|ref|YP_006861286.1|	-	0.11	12.4	1.3	0.16	11.8	1.3	1.2	1	0	0	1	1	1	0	SAM-dependent	RNA	methyltransferase
TetR_C_28	PF17937.1	gi|408403303|ref|YP_006861286.1|	-	0.21	12.1	4.4	18	5.9	0.0	2.9	1	1	2	3	3	3	0	Tetracyclin	repressor-like,	C-terminal	domain
Wzz	PF02706.15	gi|408403303|ref|YP_006861286.1|	-	0.44	10.9	5.1	0.71	10.2	2.9	2.2	1	1	1	2	2	2	0	Chain	length	determinant	protein
DUF2232	PF09991.9	gi|408403303|ref|YP_006861286.1|	-	0.93	8.6	11.7	0.031	13.5	5.0	1.8	1	1	1	2	2	2	0	Predicted	membrane	protein	(DUF2232)
DUF4199	PF13858.6	gi|408403303|ref|YP_006861286.1|	-	8.1	6.8	21.3	12	6.2	10.6	2.3	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF4199)
SGL	PF08450.12	gi|408403304|ref|YP_006861287.1|	-	1.3e-10	41.3	0.3	1.9e-06	27.7	0.2	3.0	2	1	1	3	3	3	2	SMP-30/Gluconolactonase/LRE-like	region
DUF5074	PF16819.5	gi|408403304|ref|YP_006861287.1|	-	0.00062	19.8	1.8	1.8	8.7	0.1	4.3	5	0	0	5	5	5	2	Domain	of	unknown	function	(DUF5074)
NHL	PF01436.21	gi|408403304|ref|YP_006861287.1|	-	0.005	16.8	0.7	0.22	11.6	0.1	3.9	4	0	0	4	4	4	1	NHL	repeat
SBBP	PF06739.11	gi|408403304|ref|YP_006861287.1|	-	0.22	11.6	1.6	15	5.7	0.0	3.9	4	0	0	4	4	4	0	Beta-propeller	repeat
Sortilin-Vps10	PF15902.5	gi|408403305|ref|YP_006861288.1|	-	3.5e-11	42.6	0.0	9.5e-08	31.3	0.0	2.2	1	1	1	2	2	2	2	Sortilin,	neurotensin	receptor	3,
PSII_BNR	PF14870.6	gi|408403305|ref|YP_006861288.1|	-	1.6e-08	34.2	0.8	1.1e-05	24.9	0.1	2.5	2	1	1	3	3	3	2	Photosynthesis	system	II	assembly	factor	YCF48
BNR	PF02012.20	gi|408403305|ref|YP_006861288.1|	-	0.00033	20.2	12.2	0.099	12.7	0.3	4.7	4	0	0	4	4	4	3	BNR/Asp-box	repeat
SBBP	PF06739.11	gi|408403305|ref|YP_006861288.1|	-	0.0047	16.9	0.0	0.16	12.0	0.0	3.0	3	0	0	3	3	3	1	Beta-propeller	repeat
Reg_prop	PF07494.11	gi|408403305|ref|YP_006861288.1|	-	0.0067	16.5	0.0	23	5.6	0.0	3.8	4	0	0	4	4	4	1	Two	component	regulator	propeller
DUF4185	PF13810.6	gi|408403305|ref|YP_006861288.1|	-	0.0084	15.4	0.8	2.7	7.2	0.8	3.3	1	1	0	1	1	1	1	Domain	of	unknown	function	(DUF4185)
NAD_binding_2	PF03446.15	gi|408403306|ref|YP_006861289.1|	-	5.4e-19	68.9	0.0	7.6e-19	68.4	0.0	1.1	1	0	0	1	1	1	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
6PGD	PF00393.19	gi|408403306|ref|YP_006861289.1|	-	2.5e-10	40.2	0.4	1.1e-09	38.1	0.3	1.8	1	1	0	1	1	1	1	6-phosphogluconate	dehydrogenase,	C-terminal	domain
6PGD	PF00393.19	gi|408403307|ref|YP_006861290.1|	-	0.049	13.0	0.0	0.049	13.0	0.0	1.1	1	0	0	1	1	1	0	6-phosphogluconate	dehydrogenase,	C-terminal	domain
DUF2717	PF10911.8	gi|408403307|ref|YP_006861290.1|	-	0.14	11.8	0.0	1.4	8.7	0.0	2.0	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF2717)
DUF608	PF04685.13	gi|408403308|ref|YP_006861291.1|	-	7.1e-06	25.4	1.1	9.6e-06	25.0	0.1	1.6	2	0	0	2	2	2	1	Glycosyl-hydrolase	family	116,	catalytic	region
GDE_C	PF06202.14	gi|408403308|ref|YP_006861291.1|	-	0.00076	18.5	1.3	0.057	12.3	0.1	2.4	3	0	0	3	3	3	2	Amylo-alpha-1,6-glucosidase
Trehalase	PF01204.18	gi|408403308|ref|YP_006861291.1|	-	0.004	16.1	0.1	0.006	15.5	0.1	1.2	1	0	0	1	1	1	1	Trehalase
Glyco_hydro_63	PF03200.16	gi|408403308|ref|YP_006861291.1|	-	0.06	12.1	1.9	0.12	11.1	0.8	1.7	1	1	1	2	2	2	0	Glycosyl	hydrolase	family	63	C-terminal	domain
Mod_r	PF07200.13	gi|408403308|ref|YP_006861291.1|	-	0.13	12.4	2.1	0.25	11.4	2.1	1.4	1	0	0	1	1	1	0	Modifier	of	rudimentary	(Mod(r))	protein
Zn-ribbon_8	PF09723.10	gi|408403309|ref|YP_006861292.1|	-	0.00026	21.0	0.0	0.00034	20.7	0.0	1.3	1	0	0	1	1	1	1	Zinc	ribbon	domain
zf-C2H2	PF00096.26	gi|408403309|ref|YP_006861292.1|	-	0.0019	18.5	0.3	0.0035	17.7	0.3	1.5	1	0	0	1	1	1	1	Zinc	finger,	C2H2	type
zf-C2H2_2	PF12756.7	gi|408403309|ref|YP_006861292.1|	-	0.0026	18.0	0.1	0.0028	18.0	0.1	1.1	1	0	0	1	1	1	1	C2H2	type	zinc-finger	(2	copies)
zf-C2H2_3rep	PF18868.1	gi|408403309|ref|YP_006861292.1|	-	0.0046	17.6	0.1	0.0052	17.5	0.1	1.1	1	0	0	1	1	1	1	Zinc	finger	C2H2-type,	3	repeats
zf-C2H2_4	PF13894.6	gi|408403309|ref|YP_006861292.1|	-	0.0083	16.9	0.3	0.015	16.1	0.3	1.5	1	0	0	1	1	1	1	C2H2-type	zinc	finger
zf_ZIC	PF18366.1	gi|408403309|ref|YP_006861292.1|	-	0.017	15.2	0.0	0.023	14.8	0.0	1.3	1	0	0	1	1	1	0	Zic	proteins	zinc	finger	domain
PHD_Oberon	PF07227.11	gi|408403309|ref|YP_006861292.1|	-	0.023	14.6	0.0	0.024	14.5	0.0	1.1	1	0	0	1	1	1	0	PHD	-	plant	homeodomain	finger	protein
C1_4	PF07975.12	gi|408403309|ref|YP_006861292.1|	-	0.028	14.6	0.0	0.029	14.6	0.0	1.1	1	0	0	1	1	1	0	TFIIH	C1-like	domain
Actin_micro	PF17003.5	gi|408403309|ref|YP_006861292.1|	-	0.041	13.1	0.0	0.044	13.0	0.0	1.0	1	0	0	1	1	1	0	Putative	actin-like	family
zf-H2C2_2	PF13465.6	gi|408403309|ref|YP_006861292.1|	-	0.048	14.1	0.6	2.2	8.9	0.0	2.1	2	0	0	2	2	2	0	Zinc-finger	double	domain
Lactamase_B_5	PF14597.6	gi|408403310|ref|YP_006861293.1|	-	0.0018	17.8	0.0	0.002	17.7	0.0	1.2	1	0	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Ferritin_2	PF13668.6	gi|408403312|ref|YP_006861295.1|	-	0.04	14.1	0.3	0.082	13.1	0.2	1.5	1	1	1	2	2	2	0	Ferritin-like	domain
Rubrerythrin	PF02915.17	gi|408403312|ref|YP_006861295.1|	-	0.044	14.2	0.3	0.054	13.9	0.3	1.2	1	0	0	1	1	1	0	Rubrerythrin
Phe_tRNA-synt_N	PF02912.18	gi|408403312|ref|YP_006861295.1|	-	0.083	12.8	0.2	0.11	12.5	0.2	1.2	1	0	0	1	1	1	0	Aminoacyl	tRNA	synthetase	class	II,	N-terminal	domain
DUF5345	PF17280.2	gi|408403312|ref|YP_006861295.1|	-	0.2	11.7	0.5	0.27	11.2	0.5	1.2	1	0	0	1	1	1	0	Family	of	unknown	function	(DUF5345)
DUF608	PF04685.13	gi|408403313|ref|YP_006861296.1|	-	1.5e-06	27.7	0.2	1.8e-06	27.4	0.2	1.1	1	0	0	1	1	1	1	Glycosyl-hydrolase	family	116,	catalytic	region
DUF2193	PF09959.9	gi|408403313|ref|YP_006861296.1|	-	0.00064	18.3	0.0	0.00078	18.0	0.0	1.1	1	0	0	1	1	1	1	Uncharacterized	protein	conserved	in	archaea	(DUF2193)
adh_short_C2	PF13561.6	gi|408403315|ref|YP_006861298.1|	-	4e-67	226.2	0.5	5e-67	225.9	0.5	1.0	1	0	0	1	1	1	1	Enoyl-(Acyl	carrier	protein)	reductase
adh_short	PF00106.25	gi|408403315|ref|YP_006861298.1|	-	1.3e-56	191.2	1.7	1.6e-56	190.9	1.7	1.1	1	0	0	1	1	1	1	short	chain	dehydrogenase
KR	PF08659.10	gi|408403315|ref|YP_006861298.1|	-	6.5e-11	42.5	0.1	9.7e-11	41.9	0.1	1.3	1	0	0	1	1	1	1	KR	domain
DUF1776	PF08643.10	gi|408403315|ref|YP_006861298.1|	-	0.00063	19.2	0.0	0.00073	19.0	0.0	1.2	1	0	0	1	1	1	1	Fungal	family	of	unknown	function	(DUF1776)
DUF4189	PF13827.6	gi|408403315|ref|YP_006861298.1|	-	0.054	14.0	0.0	0.1	13.1	0.0	1.5	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4189)
F420_oxidored	PF03807.17	gi|408403315|ref|YP_006861298.1|	-	0.093	13.3	0.9	0.16	12.6	0.2	1.7	2	0	0	2	2	2	0	NADP	oxidoreductase	coenzyme	F420-dependent
NAD_binding_1	PF00175.21	gi|408403316|ref|YP_006861299.1|	-	1.1e-26	93.6	0.2	3.5e-26	92.0	0.0	1.9	2	0	0	2	2	2	1	Oxidoreductase	NAD-binding	domain
Rieske	PF00355.26	gi|408403316|ref|YP_006861299.1|	-	7.7e-15	54.6	0.0	1.4e-14	53.7	0.0	1.5	1	0	0	1	1	1	1	Rieske	[2Fe-2S]	domain
FAD_binding_6	PF00970.24	gi|408403316|ref|YP_006861299.1|	-	0.00044	20.6	0.0	0.00083	19.7	0.0	1.5	1	0	0	1	1	1	1	Oxidoreductase	FAD-binding	domain
NAD_binding_6	PF08030.12	gi|408403316|ref|YP_006861299.1|	-	0.00062	19.9	0.0	0.19	11.8	0.1	2.5	1	1	1	2	2	2	2	Ferric	reductase	NAD	binding	domain
SIP	PF04954.13	gi|408403316|ref|YP_006861299.1|	-	0.028	14.9	0.0	0.06	13.9	0.0	1.5	1	0	0	1	1	1	0	Siderophore-interacting	protein
DUF4594	PF15266.6	gi|408403316|ref|YP_006861299.1|	-	0.33	11.3	4.2	2	8.7	0.2	2.2	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4594)
Lactonase	PF10282.9	gi|408403317|ref|YP_006861300.1|	-	2.4e-06	27.0	0.3	1.3e-05	24.7	0.1	2.0	1	1	0	2	2	2	1	Lactonase,	7-bladed	beta-propeller
SGL	PF08450.12	gi|408403317|ref|YP_006861300.1|	-	0.0025	17.4	1.6	0.023	14.3	0.4	2.9	2	1	1	3	3	3	2	SMP-30/Gluconolactonase/LRE-like	region
SBP56	PF05694.11	gi|408403317|ref|YP_006861300.1|	-	0.012	14.5	0.1	0.38	9.5	0.0	2.1	2	0	0	2	2	2	0	56kDa	selenium	binding	protein	(SBP56)
Cupredoxin_1	PF13473.6	gi|408403317|ref|YP_006861300.1|	-	0.028	14.5	0.0	0.075	13.2	0.0	1.7	1	0	0	1	1	1	0	Cupredoxin-like	domain
Copper-bind	PF00127.20	gi|408403317|ref|YP_006861300.1|	-	0.1	13.1	0.2	0.61	10.6	0.0	2.3	2	0	0	2	2	2	0	Copper	binding	proteins,	plastocyanin/azurin	family
CbtB	PF09489.10	gi|408403318|ref|YP_006861301.1|	-	2.2e-13	50.1	0.3	3.4e-13	49.5	0.3	1.3	1	0	0	1	1	1	1	Probable	cobalt	transporter	subunit	(CbtB)
SecE	PF00584.20	gi|408403318|ref|YP_006861301.1|	-	0.1	12.5	2.0	0.17	11.8	2.0	1.3	1	0	0	1	1	1	0	SecE/Sec61-gamma	subunits	of	protein	translocation	complex
CbtA	PF09490.10	gi|408403319|ref|YP_006861302.1|	-	6.5e-08	32.7	0.6	7.3e-08	32.5	0.6	1.0	1	0	0	1	1	1	1	Probable	cobalt	transporter	subunit	(CbtA)
GSDH	PF07995.11	gi|408403322|ref|YP_006861305.1|	-	3.7e-05	23.2	0.1	0.0003	20.2	0.0	2.1	2	0	0	2	2	2	1	Glucose	/	Sorbosone	dehydrogenase
AP_endonuc_2	PF01261.24	gi|408403323|ref|YP_006861306.1|	-	4.1e-12	46.0	0.0	4.6e-12	45.8	0.0	1.2	1	0	0	1	1	1	1	Xylose	isomerase-like	TIM	barrel
AP_endonuc_2_N	PF07582.12	gi|408403323|ref|YP_006861306.1|	-	0.0085	15.8	0.0	0.026	14.2	0.0	1.8	1	1	0	1	1	1	1	AP	endonuclease	family	2	C	terminus
HTH_45	PF14947.6	gi|408403323|ref|YP_006861306.1|	-	0.1	12.6	0.0	0.16	12.0	0.0	1.3	1	0	0	1	1	1	0	Winged	helix-turn-helix
Phosphodiest	PF01663.22	gi|408403324|ref|YP_006861307.1|	-	1.4e-45	156.4	0.1	1.7e-45	156.2	0.1	1.0	1	0	0	1	1	1	1	Type	I	phosphodiesterase	/	nucleotide	pyrophosphatase
Sulfatase	PF00884.23	gi|408403324|ref|YP_006861307.1|	-	0.0011	18.5	0.0	0.015	14.7	0.0	2.0	1	1	0	1	1	1	1	Sulfatase
UbiA	PF01040.18	gi|408403325|ref|YP_006861308.1|	-	8.6e-15	54.7	23.8	8.6e-15	54.7	23.8	2.4	1	1	1	2	2	2	1	UbiA	prenyltransferase	family
AP_endonuc_2	PF01261.24	gi|408403326|ref|YP_006861309.1|	-	1.9e-35	122.3	0.0	7.1e-35	120.4	0.0	1.7	2	0	0	2	2	2	1	Xylose	isomerase-like	TIM	barrel
UxuA	PF03786.13	gi|408403326|ref|YP_006861309.1|	-	0.0018	17.2	0.1	0.01	14.7	0.0	1.9	2	0	0	2	2	2	1	D-mannonate	dehydratase	(UxuA)
DUF1864	PF08933.11	gi|408403326|ref|YP_006861309.1|	-	0.084	11.6	0.0	0.12	11.1	0.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1864)
AP_endonuc_2_N	PF07582.12	gi|408403326|ref|YP_006861309.1|	-	0.14	11.9	0.0	0.87	9.4	0.0	2.2	2	0	0	2	2	2	0	AP	endonuclease	family	2	C	terminus
TatD_DNase	PF01026.21	gi|408403327|ref|YP_006861310.1|	-	4.7e-11	42.6	0.0	6.2e-11	42.2	0.0	1.1	1	0	0	1	1	1	1	TatD	related	DNase
ADH_N	PF08240.12	gi|408403328|ref|YP_006861311.1|	-	2.8e-24	85.1	2.8	5.1e-24	84.3	2.8	1.4	1	0	0	1	1	1	1	Alcohol	dehydrogenase	GroES-like	domain
ADH_zinc_N	PF00107.26	gi|408403328|ref|YP_006861311.1|	-	4.1e-14	52.7	0.1	6.3e-14	52.1	0.1	1.3	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
Glu_dehyd_C	PF16912.5	gi|408403328|ref|YP_006861311.1|	-	2.6e-07	30.4	0.0	4.1e-07	29.7	0.0	1.2	1	0	0	1	1	1	1	Glucose	dehydrogenase	C-terminus
RNase_PH_C	PF03725.15	gi|408403329|ref|YP_006861312.1|	-	0.06	13.4	0.1	0.088	12.9	0.1	1.3	1	0	0	1	1	1	0	3'	exoribonuclease	family,	domain	2
Creatininase	PF02633.14	gi|408403331|ref|YP_006861314.1|	-	5.4e-16	58.8	0.0	5.7e-16	58.7	0.0	1.0	1	0	0	1	1	1	1	Creatinine	amidohydrolase
GLYCAM-1	PF05242.11	gi|408403331|ref|YP_006861314.1|	-	0.17	12.0	0.1	0.23	11.6	0.1	1.2	1	0	0	1	1	1	0	Glycosylation-dependent	cell	adhesion	molecule	1	(GlyCAM-1)
DUF4242	PF14026.6	gi|408403332|ref|YP_006861315.1|	-	0.027	14.6	0.0	0.035	14.3	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF4242)
DrsE_2	PF13686.6	gi|408403332|ref|YP_006861315.1|	-	0.05	13.5	0.4	5	7.0	0.1	2.0	1	1	1	2	2	2	0	DsrE/DsrF/DrsH-like	family
YCII	PF03795.14	gi|408403332|ref|YP_006861315.1|	-	0.15	12.5	0.0	0.22	12.0	0.0	1.3	1	0	0	1	1	1	0	YCII-related	domain
Cupredoxin_1	PF13473.6	gi|408403334|ref|YP_006861317.1|	-	6.9e-10	39.0	0.0	1e-09	38.4	0.0	1.3	1	0	0	1	1	1	1	Cupredoxin-like	domain
Copper-bind	PF00127.20	gi|408403334|ref|YP_006861317.1|	-	0.00012	22.5	0.3	0.025	15.0	0.0	2.5	2	1	1	3	3	3	2	Copper	binding	proteins,	plastocyanin/azurin	family
Lactamase_B_2	PF12706.7	gi|408403335|ref|YP_006861318.1|	-	1.4e-15	57.4	0.0	6.4e-15	55.2	0.0	1.9	2	0	0	2	2	2	1	Beta-lactamase	superfamily	domain
Lactamase_B	PF00753.27	gi|408403335|ref|YP_006861318.1|	-	0.0012	18.9	0.0	0.053	13.5	0.0	2.8	2	1	0	2	2	2	1	Metallo-beta-lactamase	superfamily
Lactamase_B_6	PF16661.5	gi|408403335|ref|YP_006861318.1|	-	0.011	15.1	0.0	0.18	11.2	0.0	2.1	2	0	0	2	2	2	0	Metallo-beta-lactamase	superfamily	domain
SBP_bac_1	PF01547.25	gi|408403335|ref|YP_006861318.1|	-	0.077	12.9	0.0	0.11	12.4	0.0	1.3	1	0	0	1	1	1	0	Bacterial	extracellular	solute-binding	protein
DinB_2	PF12867.7	gi|408403336|ref|YP_006861319.1|	-	1.9e-08	34.9	0.0	2e-08	34.8	0.0	1.0	1	0	0	1	1	1	1	DinB	superfamily
DinB	PF05163.12	gi|408403336|ref|YP_006861319.1|	-	0.00031	20.7	0.0	0.00033	20.6	0.0	1.0	1	0	0	1	1	1	1	DinB	family
HHH_4	PF14490.6	gi|408403337|ref|YP_006861320.1|	-	0.08	12.9	0.0	0.098	12.6	0.0	1.1	1	0	0	1	1	1	0	Helix-hairpin-helix	containing	domain
DDE_Tnp_1	PF01609.21	gi|408403339|ref|YP_006861322.1|	-	0.0002	21.1	0.0	0.00041	20.0	0.0	1.6	1	1	0	1	1	1	1	Transposase	DDE	domain
DUF1815	PF08844.10	gi|408403339|ref|YP_006861322.1|	-	0.17	11.9	0.2	0.87	9.6	0.1	2.0	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF1815)
FTR1	PF03239.14	gi|408403340|ref|YP_006861323.1|	-	1.2e-18	67.4	24.0	2.2e-12	46.8	8.3	2.3	1	1	1	2	2	2	2	Iron	permease	FTR1	family
UPF0016	PF01169.19	gi|408403340|ref|YP_006861323.1|	-	7.9	6.9	11.4	1.5	9.2	2.7	2.8	2	0	0	2	2	2	0	Uncharacterized	protein	family	UPF0016
Radical_SAM	PF04055.21	gi|408403341|ref|YP_006861324.1|	-	1.4e-11	45.0	0.4	3.6e-11	43.7	0.4	1.6	2	0	0	2	2	2	1	Radical	SAM	superfamily
Fer4_12	PF13353.6	gi|408403341|ref|YP_006861324.1|	-	1.4e-06	28.7	0.2	2.6e-06	27.8	0.2	1.4	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
Fer4_14	PF13394.6	gi|408403341|ref|YP_006861324.1|	-	0.00028	21.0	0.6	0.00093	19.3	0.3	1.9	2	0	0	2	2	2	1	4Fe-4S	single	cluster	domain
DUF4816	PF16086.5	gi|408403341|ref|YP_006861324.1|	-	2.1	8.4	7.3	16	5.5	0.1	2.4	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4816)
zinc_ribbon_10	PF10058.9	gi|408403342|ref|YP_006861325.1|	-	0.00039	20.1	0.1	0.00066	19.3	0.1	1.4	1	0	0	1	1	1	1	Predicted	integral	membrane	zinc-ribbon	metal-binding	protein
zinc_ribbon_4	PF13717.6	gi|408403342|ref|YP_006861325.1|	-	0.0026	17.6	0.4	0.58	10.1	0.2	2.3	2	0	0	2	2	2	1	zinc-ribbon	domain
CpXC	PF14353.6	gi|408403342|ref|YP_006861325.1|	-	0.0061	16.6	0.9	0.29	11.2	0.1	2.2	1	1	1	2	2	2	1	CpXC	protein
zf-H2C2_2	PF13465.6	gi|408403342|ref|YP_006861325.1|	-	0.012	16.1	1.8	4.4	7.9	0.1	2.3	2	0	0	2	2	2	0	Zinc-finger	double	domain
zf-ribbon_3	PF13248.6	gi|408403342|ref|YP_006861325.1|	-	0.012	15.0	1.0	0.49	9.9	0.2	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
HypA	PF01155.19	gi|408403342|ref|YP_006861325.1|	-	0.012	15.6	0.4	0.019	15.0	0.3	1.5	1	1	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
OrfB_Zn_ribbon	PF07282.11	gi|408403342|ref|YP_006861325.1|	-	0.013	15.4	0.1	0.022	14.6	0.1	1.5	1	0	0	1	1	1	0	Putative	transposase	DNA-binding	domain
zf-C2H2	PF00096.26	gi|408403342|ref|YP_006861325.1|	-	0.014	15.8	0.8	4.5	7.9	0.1	2.5	2	0	0	2	2	2	0	Zinc	finger,	C2H2	type
tRNA-synt_1f	PF01921.18	gi|408403342|ref|YP_006861325.1|	-	0.016	14.1	0.0	0.02	13.8	0.0	1.1	1	0	0	1	1	1	0	tRNA	synthetases	class	I	(K)
Zn-ribbon_8	PF09723.10	gi|408403342|ref|YP_006861325.1|	-	0.025	14.7	1.1	0.025	14.7	1.1	2.0	2	0	0	2	2	1	0	Zinc	ribbon	domain
Elf1	PF05129.13	gi|408403342|ref|YP_006861325.1|	-	0.025	14.6	0.5	0.044	13.8	0.5	1.4	1	1	0	1	1	1	0	Transcription	elongation	factor	Elf1	like
C1_1	PF00130.22	gi|408403342|ref|YP_006861325.1|	-	0.027	14.4	0.2	0.041	13.8	0.2	1.3	1	0	0	1	1	1	0	Phorbol	esters/diacylglycerol	binding	domain	(C1	domain)
ADK_lid	PF05191.14	gi|408403342|ref|YP_006861325.1|	-	0.034	14.1	0.8	0.068	13.2	0.8	1.5	1	1	0	1	1	1	0	Adenylate	kinase,	active	site	lid
C1_2	PF03107.16	gi|408403342|ref|YP_006861325.1|	-	0.087	13.1	0.6	1.8	9.0	0.0	2.2	1	1	1	2	2	2	0	C1	domain
Nudix_N_2	PF14803.6	gi|408403342|ref|YP_006861325.1|	-	0.096	12.6	1.3	4.3	7.3	0.2	2.2	2	0	0	2	2	2	0	Nudix	N-terminal
TFIIS_C	PF01096.18	gi|408403342|ref|YP_006861325.1|	-	0.12	12.3	2.0	4	7.4	0.2	2.4	2	0	0	2	2	2	0	Transcription	factor	S-II	(TFIIS)
zf-Mss51	PF13824.6	gi|408403342|ref|YP_006861325.1|	-	0.14	12.2	2.2	0.31	11.2	2.2	1.8	1	1	0	1	1	1	0	Zinc-finger	of	mitochondrial	splicing	suppressor	51
zf_UBZ	PF18439.1	gi|408403342|ref|YP_006861325.1|	-	0.15	11.7	1.4	1.9	8.2	0.1	2.5	2	0	0	2	2	2	0	Ubiquitin-Binding	Zinc	Finger
Mu-like_Com	PF10122.9	gi|408403342|ref|YP_006861325.1|	-	0.16	11.5	0.1	0.22	11.0	0.1	1.3	1	0	0	1	1	1	0	Mu-like	prophage	protein	Com
Prim_Zn_Ribbon	PF08273.12	gi|408403342|ref|YP_006861325.1|	-	0.22	11.8	2.4	8.2	6.8	0.5	2.2	2	0	0	2	2	2	0	Zinc-binding	domain	of	primase-helicase
TF_Zn_Ribbon	PF08271.12	gi|408403342|ref|YP_006861325.1|	-	0.44	10.1	8.7	1.9	8.1	0.2	2.9	1	1	1	2	2	2	0	TFIIB	zinc-binding
zf-C2H2_6	PF13912.6	gi|408403342|ref|YP_006861325.1|	-	0.49	10.5	5.3	11	6.2	1.4	2.4	2	0	0	2	2	2	0	C2H2-type	zinc	finger
zf-C2H2_3	PF13878.6	gi|408403342|ref|YP_006861325.1|	-	0.5	10.2	2.9	6.9	6.6	0.2	2.3	1	1	1	2	2	2	0	zinc-finger	of	acetyl-transferase	ESCO
zinc_ribbon_5	PF13719.6	gi|408403342|ref|YP_006861325.1|	-	0.56	10.0	5.2	0.44	10.3	1.4	2.3	2	1	0	2	2	2	0	zinc-ribbon	domain
zf-C2H2_4	PF13894.6	gi|408403342|ref|YP_006861325.1|	-	0.73	10.8	5.3	17	6.6	0.1	2.6	3	0	0	3	3	2	0	C2H2-type	zinc	finger
DNA_pol3_delta2	PF13177.6	gi|408403343|ref|YP_006861326.1|	-	7.7e-18	64.8	0.6	1.5e-11	44.3	0.4	2.6	2	1	1	3	3	3	2	DNA	polymerase	III,	delta	subunit
AAA	PF00004.29	gi|408403343|ref|YP_006861326.1|	-	2.3e-16	60.4	0.7	4.1e-16	59.6	0.1	1.7	2	0	0	2	2	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
Rep_fac_C	PF08542.11	gi|408403343|ref|YP_006861326.1|	-	1e-08	35.5	0.2	3.2e-08	33.9	0.1	2.0	2	0	0	2	2	1	1	Replication	factor	C	C-terminal	domain
Rad17	PF03215.15	gi|408403343|ref|YP_006861326.1|	-	1.3e-07	31.7	0.3	1.1e-06	28.7	0.3	2.2	1	1	0	1	1	1	1	Rad17	P-loop	domain
DNA_pol3_delta	PF06144.13	gi|408403343|ref|YP_006861326.1|	-	7e-07	29.2	0.1	1.8e-06	27.8	0.0	1.7	2	0	0	2	2	2	1	DNA	polymerase	III,	delta	subunit
RuvB_N	PF05496.12	gi|408403343|ref|YP_006861326.1|	-	2.7e-06	27.2	0.1	1.5e-05	24.8	0.0	2.2	3	0	0	3	3	2	1	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
AAA_14	PF13173.6	gi|408403343|ref|YP_006861326.1|	-	4.6e-06	26.7	0.0	1e-05	25.6	0.0	1.5	1	0	0	1	1	1	1	AAA	domain
AAA_22	PF13401.6	gi|408403343|ref|YP_006861326.1|	-	2.4e-05	24.6	0.5	0.021	15.1	0.5	2.4	1	1	0	1	1	1	1	AAA	domain
AAA_16	PF13191.6	gi|408403343|ref|YP_006861326.1|	-	4e-05	24.1	0.0	0.0036	17.7	0.0	2.6	2	1	0	2	2	2	1	AAA	ATPase	domain
AAA_5	PF07728.14	gi|408403343|ref|YP_006861326.1|	-	4.5e-05	23.5	0.1	0.00017	21.6	0.0	1.9	2	0	0	2	2	2	1	AAA	domain	(dynein-related	subfamily)
PhoH	PF02562.16	gi|408403343|ref|YP_006861326.1|	-	6.8e-05	22.4	0.1	0.039	13.4	0.0	2.4	2	0	0	2	2	2	2	PhoH-like	protein
ResIII	PF04851.15	gi|408403343|ref|YP_006861326.1|	-	9.4e-05	22.5	0.0	0.0005	20.1	0.0	2.0	1	1	0	1	1	1	1	Type	III	restriction	enzyme,	res	subunit
DEAD	PF00270.29	gi|408403343|ref|YP_006861326.1|	-	0.00051	19.9	0.3	0.2	11.4	0.0	2.4	1	1	1	2	2	2	1	DEAD/DEAH	box	helicase
AAA_assoc_2	PF16193.5	gi|408403343|ref|YP_006861326.1|	-	0.00059	20.1	0.3	0.0017	18.7	0.1	2.0	2	0	0	2	2	1	1	AAA	C-terminal	domain
AAA_19	PF13245.6	gi|408403343|ref|YP_006861326.1|	-	0.00077	19.8	0.8	0.03	14.6	0.2	2.8	2	1	0	2	2	2	1	AAA	domain
Mg_chelatase	PF01078.21	gi|408403343|ref|YP_006861326.1|	-	0.0013	18.2	0.2	0.11	11.8	0.2	2.6	1	1	0	1	1	1	1	Magnesium	chelatase,	subunit	ChlI
AAA_30	PF13604.6	gi|408403343|ref|YP_006861326.1|	-	0.0018	18.0	0.2	0.0053	16.5	0.0	1.8	2	0	0	2	2	2	1	AAA	domain
AAA_2	PF07724.14	gi|408403343|ref|YP_006861326.1|	-	0.0047	17.1	0.2	0.048	13.8	0.0	2.2	2	1	0	2	2	2	1	AAA	domain	(Cdc48	subfamily)
AAA_25	PF13481.6	gi|408403343|ref|YP_006861326.1|	-	0.0073	15.9	0.0	0.014	15.0	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
Sigma54_activat	PF00158.26	gi|408403343|ref|YP_006861326.1|	-	0.0073	16.0	0.0	0.15	11.8	0.0	2.3	1	1	0	1	1	1	1	Sigma-54	interaction	domain
AAA_24	PF13479.6	gi|408403343|ref|YP_006861326.1|	-	0.015	15.0	0.1	0.036	13.8	0.0	1.7	2	0	0	2	2	1	0	AAA	domain
ATPase_2	PF01637.18	gi|408403343|ref|YP_006861326.1|	-	0.021	14.7	0.2	0.12	12.3	0.0	2.0	1	1	1	2	2	2	0	ATPase	domain	predominantly	from	Archaea
T2SSE	PF00437.20	gi|408403343|ref|YP_006861326.1|	-	0.027	13.5	0.0	0.065	12.3	0.0	1.7	2	0	0	2	2	2	0	Type	II/IV	secretion	system	protein
AAA_7	PF12775.7	gi|408403343|ref|YP_006861326.1|	-	0.032	13.7	0.0	0.076	12.5	0.0	1.6	1	0	0	1	1	1	0	P-loop	containing	dynein	motor	region
TIP49	PF06068.13	gi|408403343|ref|YP_006861326.1|	-	0.037	13.2	0.1	0.11	11.7	0.0	1.7	1	1	1	2	2	2	0	TIP49	P-loop	domain
NACHT	PF05729.12	gi|408403343|ref|YP_006861326.1|	-	0.041	13.8	0.3	1.1	9.1	0.1	2.5	2	1	0	2	2	1	0	NACHT	domain
MeaB	PF03308.16	gi|408403343|ref|YP_006861326.1|	-	0.052	12.5	0.2	0.29	10.1	0.1	2.1	1	1	1	2	2	2	0	Methylmalonyl	Co-A	mutase-associated	GTPase	MeaB
IstB_IS21	PF01695.17	gi|408403343|ref|YP_006861326.1|	-	0.074	12.8	0.1	0.24	11.1	0.1	1.7	1	1	0	1	1	1	0	IstB-like	ATP	binding	protein
MipZ	PF09140.11	gi|408403343|ref|YP_006861326.1|	-	0.078	12.2	0.0	0.16	11.2	0.0	1.4	1	0	0	1	1	1	0	ATPase	MipZ
RNA_helicase	PF00910.22	gi|408403343|ref|YP_006861326.1|	-	0.11	12.9	0.0	0.43	11.0	0.0	2.0	2	0	0	2	2	2	0	RNA	helicase
AAA_11	PF13086.6	gi|408403343|ref|YP_006861326.1|	-	0.14	11.9	0.0	0.26	11.0	0.0	1.4	1	1	0	1	1	1	0	AAA	domain
ArsA_ATPase	PF02374.15	gi|408403343|ref|YP_006861326.1|	-	0.17	11.0	1.6	0.64	9.2	0.1	2.5	1	1	1	2	2	2	0	Anion-transporting	ATPase
NTPase_1	PF03266.15	gi|408403343|ref|YP_006861326.1|	-	0.24	11.3	1.2	3.1	7.7	0.1	2.2	1	1	1	2	2	2	0	NTPase
OrfB_Zn_ribbon	PF07282.11	gi|408403345|ref|YP_006861328.1|	-	3.4e-22	78.1	0.5	6.5e-22	77.2	0.5	1.5	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
OrfB_IS605	PF01385.19	gi|408403345|ref|YP_006861328.1|	-	4.9e-17	62.3	0.7	1.5e-16	60.7	0.7	1.8	1	0	0	1	1	1	1	Probable	transposase
HTH_OrfB_IS605	PF12323.8	gi|408403345|ref|YP_006861328.1|	-	4.1e-13	48.6	0.6	2.1e-12	46.3	0.2	2.4	2	0	0	2	2	2	1	Helix-turn-helix	domain
Rpr2	PF04032.16	gi|408403345|ref|YP_006861328.1|	-	0.0012	19.1	3.0	1.2	9.5	0.4	2.8	1	1	1	2	2	2	2	RNAse	P	Rpr2/Rpp21/SNM1	subunit	domain
HypA	PF01155.19	gi|408403345|ref|YP_006861328.1|	-	0.01	15.9	0.3	0.024	14.7	0.1	1.7	2	0	0	2	2	2	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
DZR	PF12773.7	gi|408403345|ref|YP_006861328.1|	-	0.042	13.9	0.7	0.1	12.7	0.7	1.5	1	0	0	1	1	1	0	Double	zinc	ribbon
zf_UBZ	PF18439.1	gi|408403345|ref|YP_006861328.1|	-	0.26	10.9	2.5	0.43	10.2	0.1	2.2	1	1	1	2	2	2	0	Ubiquitin-Binding	Zinc	Finger
zf-NADH-PPase	PF09297.11	gi|408403345|ref|YP_006861328.1|	-	1.5	8.6	3.9	3.2	7.5	3.9	1.5	1	0	0	1	1	1	0	NADH	pyrophosphatase	zinc	ribbon	domain
zinc_ribbon_2	PF13240.6	gi|408403345|ref|YP_006861328.1|	-	2	8.2	3.6	7	6.5	0.1	2.6	3	0	0	3	3	3	0	zinc-ribbon	domain
Sld5	PF05916.11	gi|408403346|ref|YP_006861329.1|	-	4.1e-05	24.0	0.1	6.3e-05	23.4	0.1	1.3	1	0	0	1	1	1	1	GINS	complex	protein
MCM	PF00493.23	gi|408403347|ref|YP_006861330.1|	-	4.7e-94	313.7	0.0	6.9e-94	313.1	0.0	1.2	1	0	0	1	1	1	1	MCM	P-loop	domain
MCM_OB	PF17207.3	gi|408403347|ref|YP_006861330.1|	-	4.4e-37	126.7	0.3	7.5e-37	126.0	0.3	1.3	1	0	0	1	1	1	1	MCM	OB	domain
MCM_lid	PF17855.1	gi|408403347|ref|YP_006861330.1|	-	5.9e-22	77.9	0.2	1.2e-21	76.9	0.2	1.6	1	0	0	1	1	1	1	MCM	AAA-lid	domain
MCM_N	PF14551.6	gi|408403347|ref|YP_006861330.1|	-	1.8e-17	63.8	0.4	6.1e-17	62.1	0.4	1.9	1	0	0	1	1	1	1	MCM	N-terminal	domain
Mg_chelatase	PF01078.21	gi|408403347|ref|YP_006861330.1|	-	5.6e-07	29.2	0.1	7.7e-05	22.2	0.0	2.5	2	1	0	2	2	2	1	Magnesium	chelatase,	subunit	ChlI
AAA_5	PF07728.14	gi|408403347|ref|YP_006861330.1|	-	7.3e-07	29.3	0.0	4.1e-06	26.8	0.0	2.3	2	1	0	2	2	2	1	AAA	domain	(dynein-related	subfamily)
AAA_3	PF07726.11	gi|408403347|ref|YP_006861330.1|	-	0.00027	20.8	0.0	0.00099	19.0	0.0	1.9	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
HypA	PF01155.19	gi|408403347|ref|YP_006861330.1|	-	0.013	15.5	0.2	0.035	14.1	0.2	1.6	1	0	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
Zn-ribbon_8	PF09723.10	gi|408403347|ref|YP_006861330.1|	-	0.048	13.8	1.1	0.1	12.7	1.1	1.5	1	0	0	1	1	1	0	Zinc	ribbon	domain
DUF802	PF05650.11	gi|408403347|ref|YP_006861330.1|	-	0.074	13.5	1.0	0.14	12.6	1.0	1.5	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF802)
AAA_2	PF07724.14	gi|408403347|ref|YP_006861330.1|	-	0.076	13.1	0.1	0.24	11.5	0.1	1.9	1	1	0	1	1	1	0	AAA	domain	(Cdc48	subfamily)
AAA_16	PF13191.6	gi|408403347|ref|YP_006861330.1|	-	0.079	13.3	0.1	2.1	8.7	0.0	2.9	2	1	0	3	3	3	0	AAA	ATPase	domain
zf-C2HE	PF16278.5	gi|408403347|ref|YP_006861330.1|	-	2.1	8.9	3.9	2.5	8.6	1.7	2.2	2	1	0	2	2	2	0	C2HE	/	C2H2	/	C2HC	zinc-binding	finger
DEAD	PF00270.29	gi|408403348|ref|YP_006861331.1|	-	3.4e-25	88.8	0.0	6.5e-25	87.9	0.0	1.4	1	0	0	1	1	1	1	DEAD/DEAH	box	helicase
HHH_5	PF14520.6	gi|408403348|ref|YP_006861331.1|	-	4.8e-10	39.9	1.0	5.2e-09	36.6	1.5	2.6	2	0	0	2	2	2	1	Helix-hairpin-helix	domain
Helicase_C	PF00271.31	gi|408403348|ref|YP_006861331.1|	-	1.2e-09	38.5	0.0	4.4e-08	33.4	0.0	2.9	2	1	0	2	2	2	1	Helicase	conserved	C-terminal	domain
ResIII	PF04851.15	gi|408403348|ref|YP_006861331.1|	-	1.4e-07	31.7	0.0	3.6e-07	30.4	0.0	1.7	2	0	0	2	2	2	1	Type	III	restriction	enzyme,	res	subunit
HHH_2	PF12826.7	gi|408403348|ref|YP_006861331.1|	-	0.0063	16.6	0.0	0.018	15.1	0.0	1.7	1	0	0	1	1	1	1	Helix-hairpin-helix	motif
ATPase	PF06745.13	gi|408403348|ref|YP_006861331.1|	-	0.011	15.0	0.0	0.025	13.9	0.0	1.5	1	0	0	1	1	1	0	KaiC
AAA_26	PF13500.6	gi|408403348|ref|YP_006861331.1|	-	0.032	14.1	0.1	0.057	13.2	0.1	1.4	1	0	0	1	1	1	0	AAA	domain
HHH	PF00633.23	gi|408403348|ref|YP_006861331.1|	-	0.036	14.0	2.0	0.46	10.4	0.0	2.8	2	0	0	2	2	2	0	Helix-hairpin-helix	motif
T2SSE	PF00437.20	gi|408403348|ref|YP_006861331.1|	-	0.051	12.6	0.1	0.09	11.8	0.1	1.3	1	0	0	1	1	1	0	Type	II/IV	secretion	system	protein
DNA_pol_lambd_f	PF10391.9	gi|408403348|ref|YP_006861331.1|	-	0.094	12.6	0.0	0.46	10.4	0.0	2.1	1	1	1	2	2	2	0	Fingers	domain	of	DNA	polymerase	lambda
ATPase_2	PF01637.18	gi|408403348|ref|YP_006861331.1|	-	0.12	12.3	0.0	0.23	11.3	0.0	1.4	1	0	0	1	1	1	0	ATPase	domain	predominantly	from	Archaea
Glycos_transf_4	PF00953.21	gi|408403349|ref|YP_006861332.1|	-	7.9e-27	94.2	11.6	7.9e-27	94.2	11.6	2.4	2	1	1	3	3	3	1	Glycosyl	transferase	family	4
CbtB	PF09489.10	gi|408403349|ref|YP_006861332.1|	-	0.13	12.4	1.0	0.88	9.7	1.0	2.6	1	0	0	1	1	1	0	Probable	cobalt	transporter	subunit	(CbtB)
Phage_holin_3_6	PF07332.11	gi|408403350|ref|YP_006861333.1|	-	0.27	11.3	10.6	0.32	11.0	10.6	1.1	1	0	0	1	1	1	0	Putative	Actinobacterial	Holin-X,	holin	superfamily	III
MttA_Hcf106	PF02416.16	gi|408403350|ref|YP_006861333.1|	-	1.1	8.7	5.3	0.38	10.1	0.3	2.2	2	0	0	2	2	2	0	mttA/Hcf106	family
DUF2207	PF09972.9	gi|408403350|ref|YP_006861333.1|	-	3	6.5	5.4	3.4	6.3	5.4	1.0	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2207)
LTD	PF00932.19	gi|408403351|ref|YP_006861334.1|	-	4.5e-12	46.3	0.2	4.5e-12	46.3	0.2	2.4	2	1	1	3	3	3	1	Lamin	Tail	Domain
SNase	PF00565.17	gi|408403351|ref|YP_006861334.1|	-	0.015	15.8	0.0	0.027	15.0	0.0	1.4	1	0	0	1	1	1	0	Staphylococcal	nuclease	homologue
HTH_45	PF14947.6	gi|408403353|ref|YP_006861336.1|	-	2e-16	59.7	0.1	2.4e-16	59.5	0.1	1.1	1	0	0	1	1	1	1	Winged	helix-turn-helix
Dimerisation2	PF16864.5	gi|408403353|ref|YP_006861336.1|	-	0.017	15.1	0.0	0.022	14.8	0.0	1.1	1	0	0	1	1	1	0	Dimerisation	domain
P-II	PF00543.22	gi|408403355|ref|YP_006861338.1|	-	3.4e-23	82.2	3.3	4e-23	82.0	3.3	1.0	1	0	0	1	1	1	1	Nitrogen	regulatory	protein	P-II
Rabaptin	PF03528.15	gi|408403355|ref|YP_006861338.1|	-	0.0054	15.5	0.0	0.0058	15.4	0.0	1.1	1	0	0	1	1	1	1	Rabaptin
PrmA	PF06325.13	gi|408403355|ref|YP_006861338.1|	-	0.037	13.4	0.1	0.041	13.3	0.1	1.1	1	0	0	1	1	1	0	Ribosomal	protein	L11	methyltransferase	(PrmA)
DUF2179	PF10035.9	gi|408403355|ref|YP_006861338.1|	-	0.23	11.3	3.0	0.62	9.8	1.0	2.5	2	1	0	2	2	2	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2179)
DUF87	PF01935.17	gi|408403356|ref|YP_006861339.1|	-	6.4e-09	36.2	0.0	1.8e-08	34.8	0.0	1.7	1	1	0	1	1	1	1	Helicase	HerA,	central	domain
AAA_22	PF13401.6	gi|408403356|ref|YP_006861339.1|	-	0.0076	16.5	0.0	0.081	13.2	0.0	2.4	2	0	0	2	2	2	1	AAA	domain
CLP1_P	PF16575.5	gi|408403356|ref|YP_006861339.1|	-	0.013	15.3	0.0	0.021	14.6	0.0	1.4	1	0	0	1	1	1	0	mRNA	cleavage	and	polyadenylation	factor	CLP1	P-loop
DUF853	PF05872.12	gi|408403356|ref|YP_006861339.1|	-	0.016	13.8	0.0	0.35	9.4	0.0	2.1	2	0	0	2	2	2	0	Bacterial	protein	of	unknown	function	(DUF853)
KTI12	PF08433.10	gi|408403356|ref|YP_006861339.1|	-	0.16	11.4	0.0	0.32	10.4	0.0	1.4	1	0	0	1	1	1	0	Chromatin	associated	protein	KTI12
CbiA	PF01656.23	gi|408403356|ref|YP_006861339.1|	-	0.17	11.9	0.0	0.24	11.5	0.0	1.5	1	1	0	1	1	1	0	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
NurA	PF09376.10	gi|408403357|ref|YP_006861340.1|	-	2.7e-05	24.0	0.3	0.00052	19.8	0.2	2.0	1	1	0	2	2	2	1	NurA	domain
DUF1757	PF08560.10	gi|408403357|ref|YP_006861340.1|	-	0.12	12.4	0.0	0.22	11.6	0.0	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1757)
DUF4364	PF14277.6	gi|408403359|ref|YP_006861342.1|	-	0.0049	16.6	0.0	0.14	11.9	0.0	2.4	1	1	1	3	3	3	1	Domain	of	unknown	function	(DUF4364)
HTH_34	PF13601.6	gi|408403359|ref|YP_006861342.1|	-	0.04	14.1	0.1	0.62	10.3	0.0	2.3	2	1	0	2	2	2	0	Winged	helix	DNA-binding	domain
HTH_45	PF14947.6	gi|408403359|ref|YP_006861342.1|	-	0.055	13.5	0.0	0.28	11.2	0.0	2.0	2	0	0	2	2	2	0	Winged	helix-turn-helix
Rio2_N	PF09202.11	gi|408403359|ref|YP_006861342.1|	-	0.072	13.3	0.0	0.18	12.1	0.0	1.7	1	1	0	1	1	1	0	Rio2,	N-terminal
MarR_2	PF12802.7	gi|408403359|ref|YP_006861342.1|	-	0.075	12.9	0.1	0.15	12.0	0.1	1.5	1	0	0	1	1	1	0	MarR	family
HTH_27	PF13463.6	gi|408403359|ref|YP_006861342.1|	-	0.11	13.0	0.1	0.21	12.1	0.1	1.6	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
CPBP	PF02517.16	gi|408403361|ref|YP_006861344.1|	-	2.9e-05	24.4	3.6	4.1e-05	23.9	3.1	1.6	2	0	0	2	2	2	1	CPBP	intramembrane	metalloprotease
Gram_pos_anchor	PF00746.21	gi|408403361|ref|YP_006861344.1|	-	0.64	10.0	0.0	0.64	10.0	0.0	2.3	3	0	0	3	3	3	0	LPXTG	cell	wall	anchor	motif
GatB_N	PF02934.15	gi|408403363|ref|YP_006861346.1|	-	3.6e-66	223.4	0.0	6.3e-66	222.6	0.0	1.4	2	0	0	2	2	2	1	GatB/GatE	catalytic	domain
GatB_Yqey	PF02637.18	gi|408403363|ref|YP_006861346.1|	-	1.4e-17	64.0	1.9	1.4e-17	64.0	1.9	1.9	2	0	0	2	2	2	1	GatB	domain
GAD	PF02938.14	gi|408403363|ref|YP_006861346.1|	-	1e-07	32.1	0.0	3.7e-07	30.3	0.0	2.0	1	0	0	1	1	1	1	GAD	domain
YqeY	PF09424.10	gi|408403363|ref|YP_006861346.1|	-	0.00056	20.0	1.2	0.00056	20.0	1.2	2.1	2	0	0	2	2	2	1	Yqey-like	protein
Asparaginase	PF00710.20	gi|408403364|ref|YP_006861347.1|	-	1.1e-59	201.2	0.3	1.8e-59	200.5	0.3	1.3	1	0	0	1	1	1	1	Asparaginase,	N-terminal
Asparaginase_C	PF17763.1	gi|408403364|ref|YP_006861347.1|	-	2.8e-30	104.9	0.1	9.5e-30	103.1	0.0	1.9	2	0	0	2	2	2	1	Glutaminase/Asparaginase	C-terminal	domain
GatD_N	PF18195.1	gi|408403364|ref|YP_006861347.1|	-	4.4e-19	67.5	1.0	1e-18	66.4	1.0	1.7	1	0	0	1	1	1	1	GatD	N-terminal	domain
TauE	PF01925.19	gi|408403365|ref|YP_006861348.1|	-	9.5e-29	100.7	25.2	1.1e-28	100.5	25.2	1.0	1	0	0	1	1	1	1	Sulfite	exporter	TauE/SafE
DUF5456	PF17539.2	gi|408403365|ref|YP_006861348.1|	-	0.046	13.6	0.0	0.064	13.1	0.0	1.2	1	0	0	1	1	1	0	Family	of	unknown	function	(DUF5456)
Acyl-CoA_dh_C	PF12806.7	gi|408403368|ref|YP_006861351.1|	-	0.052	13.7	0.1	0.32	11.1	0.0	1.9	1	1	0	2	2	2	0	Acetyl-CoA	dehydrogenase	C-terminal	like
MIT_LIKE_ACTX	PF17556.2	gi|408403368|ref|YP_006861351.1|	-	0.096	13.3	0.1	0.16	12.6	0.1	1.3	1	0	0	1	1	1	0	MIT-like	atracotoxin	family
HTH_20	PF12840.7	gi|408403368|ref|YP_006861351.1|	-	0.18	11.9	0.0	0.31	11.1	0.0	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain
DUF2024	PF09630.10	gi|408403370|ref|YP_006861353.1|	-	2.9e-36	123.2	1.2	3.2e-36	123.0	1.2	1.0	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF2024)
MarC	PF01914.17	gi|408403371|ref|YP_006861354.1|	-	4e-45	153.7	19.4	5.1e-45	153.4	19.4	1.1	1	0	0	1	1	1	1	MarC	family	integral	membrane	protein
motB	PF17613.2	gi|408403372|ref|YP_006861355.1|	-	0.17	11.8	0.0	16	5.3	0.0	2.1	2	0	0	2	2	2	0	Modifier	of	transcription
CTP_transf_like	PF01467.26	gi|408403373|ref|YP_006861356.1|	-	2.6e-15	56.9	0.0	5.8e-15	55.7	0.0	1.6	1	1	0	1	1	1	1	Cytidylyltransferase-like
RTC	PF01137.21	gi|408403374|ref|YP_006861357.1|	-	1.1e-71	240.6	0.0	1.3e-71	240.4	0.0	1.0	1	0	0	1	1	1	1	RNA	3'-terminal	phosphate	cyclase
RTC_insert	PF05189.13	gi|408403374|ref|YP_006861357.1|	-	6.7e-10	39.4	0.0	1.4e-09	38.4	0.0	1.5	1	0	0	1	1	1	1	RNA	3'-terminal	phosphate	cyclase	(RTC),	insert	domain
CopD	PF05425.13	gi|408403375|ref|YP_006861358.1|	-	1.1e-14	54.7	3.7	2e-14	53.8	3.7	1.5	1	0	0	1	1	1	1	Copper	resistance	protein	D
DUF4149	PF13664.6	gi|408403375|ref|YP_006861358.1|	-	0.0018	18.6	0.5	0.0018	18.6	0.5	1.6	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF4149)
DUF1772	PF08592.11	gi|408403375|ref|YP_006861358.1|	-	0.046	14.0	0.5	0.07	13.4	0.1	1.5	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF1772)
LEA_2	PF03168.13	gi|408403376|ref|YP_006861359.1|	-	0.0017	18.8	0.0	0.0033	17.9	0.0	1.7	1	1	0	1	1	1	1	Late	embryogenesis	abundant	protein
DUF4981	PF16353.5	gi|408403376|ref|YP_006861359.1|	-	0.031	14.8	0.0	0.068	13.7	0.0	1.7	2	0	0	2	2	2	0	Domain	of	unknown	function(DUF4981)
DUF4307	PF14155.6	gi|408403376|ref|YP_006861359.1|	-	0.17	11.7	0.0	0.33	10.8	0.0	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4307)
DUF218	PF02698.17	gi|408403377|ref|YP_006861360.1|	-	0.068	13.2	0.0	0.11	12.5	0.0	1.3	1	0	0	1	1	1	0	DUF218	domain
IlvN	PF07991.12	gi|408403377|ref|YP_006861360.1|	-	0.069	12.7	0.1	0.16	11.5	0.1	1.6	1	0	0	1	1	1	0	Acetohydroxy	acid	isomeroreductase,	NADPH-binding	domain
Flavokinase	PF01687.17	gi|408403378|ref|YP_006861361.1|	-	0.1	12.9	0.4	7.2	7.0	0.1	2.6	1	1	1	2	2	2	0	Riboflavin	kinase
UbiD	PF01977.16	gi|408403379|ref|YP_006861362.1|	-	1.3e-99	333.9	0.2	1.4e-99	333.7	0.2	1.0	1	0	0	1	1	1	1	3-octaprenyl-4-hydroxybenzoate	carboxy-lyase
DUF3386	PF11866.8	gi|408403380|ref|YP_006861363.1|	-	0.17	11.4	0.0	0.24	10.9	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3386)
Jas	PF16135.5	gi|408403381|ref|YP_006861364.1|	-	0.22	11.7	2.2	0.21	11.8	1.3	1.5	1	1	0	1	1	1	0	TPL-binding	domain	in	jasmonate	signalling
Diphthamide_syn	PF01866.17	gi|408403382|ref|YP_006861365.1|	-	4.8e-63	213.4	0.0	6.1e-63	213.1	0.0	1.0	1	0	0	1	1	1	1	Putative	diphthamide	synthesis	protein
Fer4_7	PF12838.7	gi|408403383|ref|YP_006861366.1|	-	7.2e-10	39.3	13.2	3.4e-06	27.5	8.1	1.9	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4	PF00037.27	gi|408403383|ref|YP_006861366.1|	-	9.4e-10	37.9	11.9	1.1e-07	31.3	1.8	2.3	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_9	PF13187.6	gi|408403383|ref|YP_006861366.1|	-	1.2e-07	31.7	3.7	1.8e-07	31.2	3.7	1.2	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_10	PF13237.6	gi|408403383|ref|YP_006861366.1|	-	1.8e-06	27.9	5.7	4e-06	26.8	5.7	1.6	1	1	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_17	PF13534.6	gi|408403383|ref|YP_006861366.1|	-	4.6e-06	27.1	0.8	0.12	12.9	0.0	2.1	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_21	PF14697.6	gi|408403383|ref|YP_006861366.1|	-	1.1e-05	25.5	13.9	0.00013	22.0	6.8	1.9	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_8	PF13183.6	gi|408403383|ref|YP_006861366.1|	-	1.6e-05	25.2	3.0	0.074	13.5	0.0	2.1	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_6	PF12837.7	gi|408403383|ref|YP_006861366.1|	-	2.4e-05	24.2	11.5	0.00024	21.0	1.1	2.3	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_16	PF13484.6	gi|408403383|ref|YP_006861366.1|	-	2.6e-05	25.1	5.0	0.059	14.3	0.1	2.4	2	0	0	2	2	2	2	4Fe-4S	double	cluster	binding	domain
ETF_QO	PF05187.13	gi|408403383|ref|YP_006861366.1|	-	0.00058	20.0	0.1	0.00062	19.9	0.1	1.1	1	0	0	1	1	1	1	Electron	transfer	flavoprotein-ubiquinone	oxidoreductase,	4Fe-4S
Fer4_3	PF12798.7	gi|408403383|ref|YP_006861366.1|	-	0.0011	19.7	11.2	0.042	14.8	0.9	2.3	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_22	PF17179.4	gi|408403383|ref|YP_006861366.1|	-	0.0044	17.8	3.8	0.27	12.1	0.0	2.2	2	0	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_13	PF13370.6	gi|408403383|ref|YP_006861366.1|	-	0.014	15.9	8.5	0.052	14.1	0.6	2.2	2	0	0	2	2	2	0	4Fe-4S	single	cluster	domain	of	Ferredoxin	I
Fer4_2	PF12797.7	gi|408403383|ref|YP_006861366.1|	-	0.018	15.1	10.0	0.052	13.7	0.9	2.3	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_4	PF12800.7	gi|408403383|ref|YP_006861366.1|	-	0.048	14.2	6.2	1.1	9.9	0.2	2.3	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Tenui_PVC2	PF06656.11	gi|408403383|ref|YP_006861366.1|	-	0.062	11.2	0.1	0.062	11.2	0.1	1.0	1	0	0	1	1	1	0	Tenuivirus	PVC2	protein
Fer4_18	PF13746.6	gi|408403383|ref|YP_006861366.1|	-	0.083	13.1	7.6	1.6	9.0	0.6	2.1	1	1	1	2	2	2	0	4Fe-4S	dicluster	domain
Fer4_15	PF13459.6	gi|408403383|ref|YP_006861366.1|	-	0.13	13.0	12.0	23	5.8	12.0	2.2	1	1	0	1	1	1	0	4Fe-4S	single	cluster	domain
MG2	PF01835.19	gi|408403384|ref|YP_006861367.1|	-	1.9e-11	44.3	0.2	1.9e-10	41.1	0.1	2.4	1	1	0	2	2	2	1	MG2	domain
Alph_Pro_TM	PF09608.10	gi|408403384|ref|YP_006861367.1|	-	0.00044	20.2	2.5	0.044	13.6	0.1	2.5	1	1	0	2	2	2	2	Putative	transmembrane	protein	(Alph_Pro_TM)
DUF3426	PF11906.8	gi|408403384|ref|YP_006861367.1|	-	0.00045	20.4	0.0	0.0012	19.0	0.0	1.8	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF3426)
FlgD_ig	PF13860.6	gi|408403384|ref|YP_006861367.1|	-	0.0016	18.3	1.1	0.0016	18.3	1.1	3.0	3	1	0	3	3	3	1	FlgD	Ig-like	domain
A2M_BRD	PF07703.14	gi|408403384|ref|YP_006861367.1|	-	0.0029	17.9	2.1	0.0029	17.9	2.1	2.2	1	1	1	2	2	2	1	Alpha-2-macroglobulin	bait	region	domain
Gmad2	PF10648.9	gi|408403384|ref|YP_006861367.1|	-	0.0058	16.8	2.7	0.015	15.5	0.1	2.6	3	1	0	3	3	3	1	Immunoglobulin-like	domain	of	bacterial	spore	germination
Glyco_hydro2_C5	PF18565.1	gi|408403384|ref|YP_006861367.1|	-	0.012	15.5	3.7	0.091	12.6	0.4	2.8	2	2	0	2	2	2	0	Glycoside	hydrolase	family	2	C-terminal	domain	5
CBM60	PF16841.5	gi|408403384|ref|YP_006861367.1|	-	0.019	15.4	0.8	0.086	13.3	0.1	2.4	2	0	0	2	2	2	0	Ca-dependent	carbohydrate-binding	module	xylan-binding
Glyco_hydro_5_C	PF18564.1	gi|408403384|ref|YP_006861367.1|	-	0.086	13.4	4.9	0.23	12.0	0.3	3.1	2	2	1	3	3	3	0	Glycoside	hydrolase	family	5	C-terminal	domain
Big_6	PF17936.1	gi|408403384|ref|YP_006861367.1|	-	0.15	12.4	4.7	0.19	12.1	0.2	3.3	2	1	3	5	5	5	0	Bacterial	Ig	domain
OMP_b-brl	PF13505.6	gi|408403384|ref|YP_006861367.1|	-	0.29	11.2	3.6	0.61	10.2	2.7	2.1	1	1	0	1	1	1	0	Outer	membrane	protein	beta-barrel	domain
Big_1	PF02369.16	gi|408403384|ref|YP_006861367.1|	-	3.7	7.6	10.3	0.096	12.7	0.6	3.3	4	0	0	4	4	4	0	Bacterial	Ig-like	domain	(group	1)
HTH_45	PF14947.6	gi|408403385|ref|YP_006861368.1|	-	1e-22	79.9	1.7	1.3e-22	79.5	1.7	1.1	1	0	0	1	1	1	1	Winged	helix-turn-helix
DUF4364	PF14277.6	gi|408403385|ref|YP_006861368.1|	-	0.00025	20.8	1.0	0.00029	20.6	1.0	1.3	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4364)
HTH_27	PF13463.6	gi|408403385|ref|YP_006861368.1|	-	0.01	16.3	0.1	0.017	15.6	0.1	1.4	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
ANAPC2	PF08672.11	gi|408403385|ref|YP_006861368.1|	-	0.061	13.8	0.2	0.46	11.0	0.1	2.1	2	1	0	2	2	2	0	Anaphase	promoting	complex	(APC)	subunit	2
TFIIE_alpha	PF02002.17	gi|408403385|ref|YP_006861368.1|	-	0.11	12.3	0.1	0.12	12.2	0.1	1.2	1	0	0	1	1	1	0	TFIIE	alpha	subunit
Baculo_LEF-10	PF07206.11	gi|408403389|ref|YP_006861372.1|	-	0.031	14.4	0.5	0.059	13.5	0.5	1.4	1	0	0	1	1	1	0	Baculovirus	late	expression	factor	10	(LEF-10)
Tn7_Tnp_TnsA_N	PF08722.11	gi|408403389|ref|YP_006861372.1|	-	0.034	14.3	0.3	0.061	13.5	0.1	1.5	2	0	0	2	2	2	0	TnsA	endonuclease	N	terminal
PDDEXK_9	PF08011.11	gi|408403389|ref|YP_006861372.1|	-	0.083	12.8	0.7	0.14	12.0	0.2	1.7	1	1	1	2	2	2	0	PD-(D/E)XK	nuclease	superfamily
DUF35_N	PF12172.8	gi|408403391|ref|YP_006861374.1|	-	0.088	12.7	2.5	0.23	11.4	2.5	1.7	1	1	0	1	1	1	0	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
HTH_45	PF14947.6	gi|408403392|ref|YP_006861375.1|	-	9e-14	51.2	0.0	1.1e-13	51.0	0.0	1.0	1	0	0	1	1	1	1	Winged	helix-turn-helix
DUF4364	PF14277.6	gi|408403392|ref|YP_006861375.1|	-	0.00014	21.6	0.0	0.00016	21.4	0.0	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4364)
HTH_5	PF01022.20	gi|408403392|ref|YP_006861375.1|	-	0.00087	19.1	0.0	0.0012	18.6	0.0	1.2	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
Dimerisation2	PF16864.5	gi|408403392|ref|YP_006861375.1|	-	0.025	14.6	0.0	0.031	14.3	0.0	1.1	1	0	0	1	1	1	0	Dimerisation	domain
Mrr_N	PF14338.6	gi|408403392|ref|YP_006861375.1|	-	0.044	13.9	0.0	0.12	12.6	0.0	1.7	2	0	0	2	2	2	0	Mrr	N-terminal	domain
PadR	PF03551.14	gi|408403392|ref|YP_006861375.1|	-	0.072	13.1	0.0	0.098	12.6	0.0	1.3	1	0	0	1	1	1	0	Transcriptional	regulator	PadR-like	family
HTH_12	PF08461.10	gi|408403392|ref|YP_006861375.1|	-	0.093	12.7	0.0	0.15	12.0	0.0	1.4	1	0	0	1	1	1	0	Ribonuclease	R	winged-helix	domain
FokI_C	PF02980.16	gi|408403392|ref|YP_006861375.1|	-	0.14	12.1	0.0	0.32	11.0	0.0	1.6	1	1	0	1	1	1	0	Restriction	endonuclease	FokI,	catalytic	domain
zf-UBP	PF02148.19	gi|408403393|ref|YP_006861376.1|	-	0.016	15.5	0.0	0.048	14.0	0.0	1.7	1	0	0	1	1	1	0	Zn-finger	in	ubiquitin-hydrolases	and	other	protein
PKcGMP_CC	PF16808.5	gi|408403393|ref|YP_006861376.1|	-	0.048	13.5	2.7	0.048	13.5	2.7	2.1	2	0	0	2	2	2	0	Coiled-coil	N-terminus	of	cGMP-dependent	protein	kinase
Rpr2	PF04032.16	gi|408403393|ref|YP_006861376.1|	-	0.13	12.5	0.0	0.28	11.5	0.0	1.4	1	0	0	1	1	1	0	RNAse	P	Rpr2/Rpp21/SNM1	subunit	domain
SlyX	PF04102.12	gi|408403393|ref|YP_006861376.1|	-	0.19	12.4	5.9	1.9	9.2	1.5	2.8	2	1	1	3	3	3	0	SlyX
Sld7_C	PF18596.1	gi|408403393|ref|YP_006861376.1|	-	0.25	11.5	1.8	4.1	7.6	0.2	2.4	2	0	0	2	2	2	0	Sld7	C-terminal	domain
Holin_BhlA	PF10960.8	gi|408403393|ref|YP_006861376.1|	-	0.84	9.6	7.6	1.2	9.1	0.0	2.6	2	1	0	2	2	2	0	BhlA	holin	family
NitrOD5	PF11537.8	gi|408403398|ref|YP_006861381.1|	-	0.078	13.1	0.0	0.088	12.9	0.0	1.2	1	0	0	1	1	1	0	Nitrosopumilus	output	domain	5
LPD18	PF18832.1	gi|408403399|ref|YP_006861382.1|	-	0.035	14.2	0.0	0.054	13.6	0.0	1.3	1	0	0	1	1	1	0	Large	polyvalent	protein-associated	domain	18
Pkinase	PF00069.25	gi|408403403|ref|YP_006861386.1|	-	9.6e-47	159.6	0.0	1.2e-46	159.2	0.0	1.1	1	0	0	1	1	1	1	Protein	kinase	domain
Pkinase_Tyr	PF07714.17	gi|408403403|ref|YP_006861386.1|	-	5.7e-27	94.6	0.0	6.9e-27	94.3	0.0	1.0	1	0	0	1	1	1	1	Protein	tyrosine	kinase
APH	PF01636.23	gi|408403403|ref|YP_006861386.1|	-	1.7e-06	28.1	0.1	0.065	13.1	0.0	2.1	1	1	1	2	2	2	2	Phosphotransferase	enzyme	family
FTA2	PF13095.6	gi|408403403|ref|YP_006861386.1|	-	0.009	15.7	0.1	4	7.0	0.0	2.2	2	0	0	2	2	2	2	Kinetochore	Sim4	complex	subunit	FTA2
Kdo	PF06293.14	gi|408403403|ref|YP_006861386.1|	-	0.02	14.2	0.2	0.06	12.7	0.1	1.7	2	0	0	2	2	2	0	Lipopolysaccharide	kinase	(Kdo/WaaP)	family
OrfB_IS605	PF01385.19	gi|408403404|ref|YP_006861387.1|	-	1.3e-05	25.4	0.1	3.2e-05	24.2	0.0	1.7	2	0	0	2	2	2	1	Probable	transposase
OrfB_Zn_ribbon	PF07282.11	gi|408403405|ref|YP_006861388.1|	-	3.9e-23	81.1	0.2	6.5e-23	80.4	0.2	1.4	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
Rpr2	PF04032.16	gi|408403405|ref|YP_006861388.1|	-	0.00025	21.3	1.9	0.19	12.1	0.4	2.2	1	1	1	2	2	2	2	RNAse	P	Rpr2/Rpp21/SNM1	subunit	domain
HypA	PF01155.19	gi|408403405|ref|YP_006861388.1|	-	0.0024	17.9	0.1	0.0031	17.5	0.1	1.1	1	0	0	1	1	1	1	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
DZR	PF12773.7	gi|408403405|ref|YP_006861388.1|	-	0.0042	17.1	0.4	0.0064	16.5	0.4	1.3	1	0	0	1	1	1	1	Double	zinc	ribbon
zf_UBZ	PF18439.1	gi|408403405|ref|YP_006861388.1|	-	0.0043	16.6	1.8	0.14	11.8	0.1	2.2	1	1	1	2	2	2	1	Ubiquitin-Binding	Zinc	Finger
OrfB_IS605	PF01385.19	gi|408403405|ref|YP_006861388.1|	-	0.0052	17.0	0.2	0.0052	17.0	0.2	1.8	2	1	0	2	2	2	1	Probable	transposase
zinc_ribbon_2	PF13240.6	gi|408403405|ref|YP_006861388.1|	-	0.0077	15.9	0.7	2.4	8.0	0.1	2.2	2	0	0	2	2	2	2	zinc-ribbon	domain
zf-ribbon_3	PF13248.6	gi|408403405|ref|YP_006861388.1|	-	0.011	15.1	2.3	0.096	12.1	2.4	2.0	1	1	1	2	2	2	0	zinc-ribbon	domain
TF_Zn_Ribbon	PF08271.12	gi|408403405|ref|YP_006861388.1|	-	0.014	14.9	2.5	0.12	11.9	2.5	2.1	1	1	1	2	2	2	0	TFIIB	zinc-binding
FYVE	PF01363.21	gi|408403405|ref|YP_006861388.1|	-	0.046	13.9	0.1	0.068	13.3	0.1	1.3	1	0	0	1	1	1	0	FYVE	zinc	finger
Nudix_N_2	PF14803.6	gi|408403405|ref|YP_006861388.1|	-	0.051	13.5	3.2	0.48	10.4	3.2	2.2	1	1	0	1	1	1	0	Nudix	N-terminal
zf-NADH-PPase	PF09297.11	gi|408403405|ref|YP_006861388.1|	-	0.079	12.6	3.0	0.14	11.9	3.0	1.4	1	0	0	1	1	1	0	NADH	pyrophosphatase	zinc	ribbon	domain
NinF	PF05810.12	gi|408403405|ref|YP_006861388.1|	-	0.12	12.2	0.4	0.24	11.3	0.4	1.5	1	0	0	1	1	1	0	NinF	protein
zf-dskA_traR	PF01258.17	gi|408403405|ref|YP_006861388.1|	-	1.2	9.2	3.8	15	5.6	3.0	2.7	2	1	0	2	2	2	0	Prokaryotic	dksA/traR	C4-type	zinc	finger
Cupin_1	PF00190.22	gi|408403406|ref|YP_006861389.1|	-	0.052	13.2	0.6	0.053	13.1	0.6	1.0	1	0	0	1	1	1	0	Cupin
Fst_toxin	PF13955.6	gi|408403407|ref|YP_006861390.1|	-	0.052	13.5	0.1	0.084	12.8	0.1	1.3	1	0	0	1	1	1	0	Toxin	Fst,	type	I	toxin-antitoxin	system
DUF72	PF01904.18	gi|408403408|ref|YP_006861391.1|	-	1.6e-18	67.6	0.0	1.7e-18	67.5	0.0	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF72
DUF72	PF01904.18	gi|408403409|ref|YP_006861392.1|	-	4.8e-08	33.4	0.0	4.8e-08	33.4	0.0	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF72
Pex26	PF07163.12	gi|408403413|ref|YP_006861396.1|	-	0.049	12.9	0.2	0.061	12.6	0.2	1.2	1	0	0	1	1	1	0	Pex26	protein
DivIVA	PF05103.13	gi|408403414|ref|YP_006861397.1|	-	0.001	19.2	0.2	0.0016	18.6	0.2	1.2	1	0	0	1	1	1	1	DivIVA	protein
DUF4157	PF13699.6	gi|408403415|ref|YP_006861398.1|	-	0.00055	20.1	0.0	0.0006	20.0	0.0	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4157)
CBS	PF00571.28	gi|408403417|ref|YP_006861400.1|	-	1.9e-15	57.1	1.3	7.2e-07	29.6	0.5	3.0	3	0	0	3	3	3	2	CBS	domain
HTH_3	PF01381.22	gi|408403417|ref|YP_006861400.1|	-	2.1e-13	50.1	0.3	5.8e-13	48.7	0.3	1.8	1	0	0	1	1	1	1	Helix-turn-helix
HTH_31	PF13560.6	gi|408403417|ref|YP_006861400.1|	-	3.6e-07	30.4	0.1	7.3e-07	29.4	0.1	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_19	PF12844.7	gi|408403417|ref|YP_006861400.1|	-	3.8e-07	30.0	0.7	1.1e-06	28.5	0.1	2.1	3	0	0	3	3	3	1	Helix-turn-helix	domain
HTH_25	PF13413.6	gi|408403417|ref|YP_006861400.1|	-	1.9e-05	24.5	0.5	0.0013	18.5	0.1	2.3	1	1	1	2	2	2	1	Helix-turn-helix	domain
CUTL	PF16557.5	gi|408403417|ref|YP_006861400.1|	-	0.0035	17.5	0.2	0.012	15.7	0.1	2.0	2	0	0	2	2	2	1	CUT1-like	DNA-binding	domain	of	SATB
Pou	PF00157.17	gi|408403417|ref|YP_006861400.1|	-	0.03	14.3	1.1	0.13	12.2	1.1	2.1	1	1	0	1	1	1	0	Pou	domain	-	N-terminal	to	homeobox	domain
PARP_reg	PF02877.14	gi|408403418|ref|YP_006861401.1|	-	0.071	13.2	0.0	0.084	13.0	0.0	1.1	1	0	0	1	1	1	0	Poly(ADP-ribose)	polymerase,	regulatory	domain
Arc_PepC_II	PF06847.11	gi|408403421|ref|YP_006861404.1|	-	1.2e-07	32.1	0.0	3.8e-07	30.5	0.0	1.9	2	0	0	2	2	2	1	Archaeal	Peptidase	A24	C-terminus	Type	II
Peptidase_A24	PF01478.18	gi|408403421|ref|YP_006861404.1|	-	0.00026	21.4	8.6	0.00026	21.4	8.6	1.8	2	1	0	2	2	2	1	Type	IV	leader	peptidase	family
UCR_UQCRX_QCR9	PF05365.12	gi|408403421|ref|YP_006861404.1|	-	0.15	12.0	0.0	0.82	9.7	0.0	2.2	2	0	0	2	2	2	0	Ubiquinol-cytochrome	C	reductase,	UQCRX/QCR9	like
RHH_6	PF16762.5	gi|408403422|ref|YP_006861405.1|	-	0.0057	17.2	0.0	0.0071	16.9	0.0	1.2	1	0	0	1	1	1	1	Ribbon-helix-helix	domain
Big_1	PF02369.16	gi|408403423|ref|YP_006861406.1|	-	1.8e-09	37.5	15.3	2.4e-07	30.6	0.5	4.6	3	0	0	3	3	3	2	Bacterial	Ig-like	domain	(group	1)
MG4	PF17789.1	gi|408403423|ref|YP_006861406.1|	-	2e-06	27.9	0.3	1.4e-05	25.1	0.1	2.5	2	0	0	2	2	2	1	Macroglobulin	domain	MG4
CarboxypepD_reg	PF13620.6	gi|408403423|ref|YP_006861406.1|	-	1.2e-05	25.5	0.5	1.2e-05	25.5	0.5	3.7	3	1	1	4	4	4	1	Carboxypeptidase	regulatory-like	domain
Invasin_D3	PF09134.10	gi|408403423|ref|YP_006861406.1|	-	0.011	16.0	20.1	0.024	14.9	0.2	6.3	6	1	0	7	7	7	0	Invasin,	domain	3
bMG3	PF11974.8	gi|408403423|ref|YP_006861406.1|	-	0.021	14.9	0.0	0.11	12.6	0.0	2.2	2	0	0	2	2	2	0	Bacterial	alpha-2-macroglobulin	MG3	domain
DUF824	PF05688.11	gi|408403423|ref|YP_006861406.1|	-	0.6	10.0	4.3	2.1	8.2	0.2	3.9	5	0	0	5	5	5	0	Salmonella	repeat	of	unknown	function	(DUF824)
HTH_45	PF14947.6	gi|408403424|ref|YP_006861407.1|	-	2.4e-20	72.3	0.8	2.8e-20	72.1	0.8	1.1	1	0	0	1	1	1	1	Winged	helix-turn-helix
DUF4364	PF14277.6	gi|408403424|ref|YP_006861407.1|	-	0.002	17.9	0.1	0.0024	17.6	0.1	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4364)
HTH_27	PF13463.6	gi|408403424|ref|YP_006861407.1|	-	0.0038	17.7	0.0	0.0059	17.1	0.0	1.3	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
Aldolase	PF01081.19	gi|408403424|ref|YP_006861407.1|	-	0.055	12.9	0.0	0.061	12.7	0.0	1.0	1	0	0	1	1	1	0	KDPG	and	KHG	aldolase
DUF505	PF04458.12	gi|408403424|ref|YP_006861407.1|	-	0.093	11.1	0.0	0.095	11.1	0.0	1.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF505)
RQC	PF09382.10	gi|408403424|ref|YP_006861407.1|	-	0.13	12.1	0.0	0.15	11.9	0.0	1.3	1	0	0	1	1	1	0	RQC	domain
YfdX	PF10938.8	gi|408403425|ref|YP_006861408.1|	-	0.00016	21.6	1.9	0.31	11.0	0.0	2.6	1	1	1	2	2	2	2	YfdX	protein
FliS	PF02561.14	gi|408403425|ref|YP_006861408.1|	-	0.0004	20.6	6.7	0.13	12.6	0.2	3.3	2	1	1	3	3	3	2	Flagellar	protein	FliS
DUF4363	PF14276.6	gi|408403425|ref|YP_006861408.1|	-	0.0032	17.5	2.3	3.3	7.9	0.1	3.5	2	2	0	2	2	2	2	Domain	of	unknown	function	(DUF4363)
Cytochrom_B562	PF07361.11	gi|408403425|ref|YP_006861408.1|	-	0.015	16.0	8.2	1.1	9.9	0.9	3.9	2	1	1	4	4	4	0	Cytochrome	b562
Erythro_esteras	PF05139.14	gi|408403425|ref|YP_006861408.1|	-	0.1	12.4	3.3	0.14	11.9	2.5	1.6	1	1	0	1	1	1	0	Erythromycin	esterase
BLM10_mid	PF16507.5	gi|408403425|ref|YP_006861408.1|	-	0.13	10.9	1.6	0.45	9.1	0.3	2.3	3	0	0	3	3	3	0	Proteasome-substrate-size	regulator,	mid	region
DASH_Duo1	PF08651.10	gi|408403425|ref|YP_006861408.1|	-	0.14	11.9	3.9	2.8	7.8	0.4	3.4	3	1	0	3	3	3	0	DASH	complex	subunit	Duo1
DUF1741	PF08427.10	gi|408403425|ref|YP_006861408.1|	-	1.1	8.8	5.5	3.8	7.1	1.7	2.2	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF1741)
DUF2167	PF09935.9	gi|408403427|ref|YP_006861410.1|	-	0.095	11.9	0.0	0.16	11.1	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2167)
DUF2232	PF09991.9	gi|408403427|ref|YP_006861410.1|	-	0.29	10.3	0.1	0.29	10.3	0.1	1.7	2	0	0	2	2	2	0	Predicted	membrane	protein	(DUF2232)
DUF4229	PF14012.6	gi|408403427|ref|YP_006861410.1|	-	0.72	10.0	2.5	0.8	9.8	0.0	2.0	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF4229)
Gram_pos_anchor	PF00746.21	gi|408403427|ref|YP_006861410.1|	-	3.4	7.7	4.7	2.4	8.2	0.1	2.8	3	0	0	3	3	3	0	LPXTG	cell	wall	anchor	motif
HhH-GPD	PF00730.25	gi|408403428|ref|YP_006861411.1|	-	2e-28	99.0	0.0	3e-28	98.4	0.0	1.3	1	0	0	1	1	1	1	HhH-GPD	superfamily	base	excision	DNA	repair	protein
HHH	PF00633.23	gi|408403428|ref|YP_006861411.1|	-	5e-09	35.6	0.0	4.1e-08	32.7	0.0	2.4	2	0	0	2	2	2	1	Helix-hairpin-helix	motif
HHH_5	PF14520.6	gi|408403428|ref|YP_006861411.1|	-	8e-07	29.6	0.3	0.029	15.0	0.1	2.5	1	1	1	2	2	2	2	Helix-hairpin-helix	domain
DUF2400	PF09674.10	gi|408403428|ref|YP_006861411.1|	-	0.0047	16.9	0.1	0.012	15.7	0.0	1.6	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF2400)
HHH_2	PF12826.7	gi|408403428|ref|YP_006861411.1|	-	0.039	14.0	0.0	9.6	6.4	0.0	2.3	2	0	0	2	2	2	0	Helix-hairpin-helix	motif
OrfB_IS605	PF01385.19	gi|408403429|ref|YP_006861412.1|	-	0.0068	16.6	4.5	0.0085	16.3	0.9	2.6	2	1	0	2	2	2	1	Probable	transposase
DUF521	PF04412.13	gi|408403430|ref|YP_006861413.1|	-	3.5e-119	398.1	0.6	6.4e-119	397.2	0.6	1.4	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF521)
DUF126	PF01989.16	gi|408403431|ref|YP_006861414.1|	-	3.1e-28	97.4	0.1	5.1e-28	96.7	0.1	1.3	1	0	0	1	1	1	1	Aconitase	X	swivel	domain
HTH_OrfB_IS605	PF12323.8	gi|408403432|ref|YP_006861415.1|	-	2e-14	52.8	1.0	4.4e-14	51.7	0.6	1.8	1	1	1	2	2	2	1	Helix-turn-helix	domain
HemolysinCabind	PF00353.19	gi|408403433|ref|YP_006861416.1|	-	3e-21	75.0	119.1	4.8e-07	29.6	17.0	3.6	1	1	4	5	5	5	5	RTX	calcium-binding	nonapeptide	repeat	(4	copies)
Big_9	PF17963.1	gi|408403433|ref|YP_006861416.1|	-	2.9e-17	63.2	6.5	2.9e-17	63.2	6.5	3.0	3	0	0	3	3	2	1	Bacterial	Ig	domain
Cadherin_4	PF17803.1	gi|408403433|ref|YP_006861416.1|	-	9.1e-12	45.4	4.3	9.1e-12	45.4	4.3	4.0	4	0	0	4	4	4	1	Bacterial	cadherin-like	domain
Cadherin_5	PF17892.1	gi|408403433|ref|YP_006861416.1|	-	3.9e-07	30.0	1.6	3.9e-07	30.0	1.6	2.4	3	0	0	3	3	3	1	Cadherin-like	domain
2OG-FeII_Oxy_4	PF13661.6	gi|408403433|ref|YP_006861416.1|	-	0.00069	20.2	0.0	0.98	10.1	0.0	3.1	3	0	0	3	3	3	1	2OG-Fe(II)	oxygenase	superfamily
Cadherin_3	PF16184.5	gi|408403433|ref|YP_006861416.1|	-	0.00081	19.4	0.3	0.003	17.5	0.3	2.0	1	1	0	1	1	1	1	Cadherin-like
Reprolysin_5	PF13688.6	gi|408403433|ref|YP_006861416.1|	-	0.0016	18.6	0.2	0.004	17.3	0.2	1.6	1	0	0	1	1	1	1	Metallo-peptidase	family	M12
YtxC	PF08812.11	gi|408403433|ref|YP_006861416.1|	-	0.0021	17.7	0.6	0.11	12.0	0.1	2.2	2	0	0	2	2	2	1	YtxC-like	family
Reprolysin_4	PF13583.6	gi|408403433|ref|YP_006861416.1|	-	0.0044	16.7	0.4	0.018	14.7	0.1	2.1	2	0	0	2	2	2	1	Metallo-peptidase	family	M12B	Reprolysin-like
Peptidase_M66	PF10462.9	gi|408403433|ref|YP_006861416.1|	-	0.049	12.6	1.8	0.084	11.8	1.8	1.3	1	0	0	1	1	1	0	Peptidase	M66
Reprolysin_3	PF13582.6	gi|408403433|ref|YP_006861416.1|	-	0.057	13.9	0.2	0.18	12.3	0.0	2.0	2	0	0	2	2	2	0	Metallo-peptidase	family	M12B	Reprolysin-like
Peptidase_M10	PF00413.24	gi|408403433|ref|YP_006861416.1|	-	0.11	12.4	0.0	0.14	12.0	0.0	1.3	1	0	0	1	1	1	0	Matrixin
HTH_45	PF14947.6	gi|408403434|ref|YP_006861417.1|	-	2.3e-12	46.7	0.0	2.5e-12	46.6	0.0	1.1	1	0	0	1	1	1	1	Winged	helix-turn-helix
DUF4364	PF14277.6	gi|408403434|ref|YP_006861417.1|	-	0.00097	18.9	0.0	0.0011	18.8	0.0	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4364)
HTH_27	PF13463.6	gi|408403434|ref|YP_006861417.1|	-	0.0032	17.9	0.0	0.019	15.4	0.0	1.8	2	0	0	2	2	2	1	Winged	helix	DNA-binding	domain
PadR	PF03551.14	gi|408403434|ref|YP_006861417.1|	-	0.0064	16.4	0.0	0.0083	16.1	0.0	1.2	1	0	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
RQC	PF09382.10	gi|408403434|ref|YP_006861417.1|	-	0.017	14.9	0.0	0.021	14.6	0.0	1.1	1	0	0	1	1	1	0	RQC	domain
DUF1495	PF07381.11	gi|408403434|ref|YP_006861417.1|	-	0.035	13.9	0.0	0.046	13.5	0.0	1.2	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain	(DUF1495)
Rio2_N	PF09202.11	gi|408403434|ref|YP_006861417.1|	-	0.11	12.8	0.0	0.14	12.4	0.0	1.1	1	0	0	1	1	1	0	Rio2,	N-terminal
HTH_IclR	PF09339.10	gi|408403434|ref|YP_006861417.1|	-	0.12	12.2	0.0	0.22	11.4	0.0	1.4	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
DUF167	PF02594.16	gi|408403435|ref|YP_006861418.1|	-	6.2e-17	61.5	0.2	7e-17	61.3	0.2	1.0	1	0	0	1	1	1	1	Uncharacterised	ACR,	YggU	family	COG1872
TF_Zn_Ribbon	PF08271.12	gi|408403436|ref|YP_006861419.1|	-	2e-07	30.4	0.5	2.8e-07	30.0	0.5	1.2	1	0	0	1	1	1	1	TFIIB	zinc-binding
OrfB_Zn_ribbon	PF07282.11	gi|408403436|ref|YP_006861419.1|	-	0.00039	20.3	0.2	0.00072	19.4	0.2	1.4	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
zf_Rg	PF17915.1	gi|408403436|ref|YP_006861419.1|	-	0.0013	18.1	0.2	0.0016	17.8	0.2	1.2	1	0	0	1	1	1	1	Reverse	gyrase	zinc	finger
zf-ribbon_3	PF13248.6	gi|408403436|ref|YP_006861419.1|	-	0.0029	17.0	1.3	0.33	10.4	0.2	2.2	2	0	0	2	2	2	1	zinc-ribbon	domain
zinc-ribbons_6	PF07191.12	gi|408403436|ref|YP_006861419.1|	-	0.0048	16.8	0.6	0.0074	16.2	0.6	1.3	1	0	0	1	1	1	1	zinc-ribbons
Zn_Tnp_IS91	PF14319.6	gi|408403436|ref|YP_006861419.1|	-	0.0055	16.7	0.1	0.0089	16.0	0.1	1.4	1	0	0	1	1	1	1	Transposase	zinc-binding	domain
Zn_Tnp_IS1595	PF12760.7	gi|408403436|ref|YP_006861419.1|	-	0.0081	16.1	0.4	0.012	15.5	0.4	1.3	1	0	0	1	1	1	1	Transposase	zinc-ribbon	domain
Zn-ribbon_8	PF09723.10	gi|408403436|ref|YP_006861419.1|	-	0.013	15.6	0.7	2.9	8.1	0.1	2.4	2	0	0	2	2	2	0	Zinc	ribbon	domain
FYDLN_acid	PF09538.10	gi|408403436|ref|YP_006861419.1|	-	0.021	15.5	0.7	0.025	15.2	0.7	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(FYDLN_acid)
Nudix_N_2	PF14803.6	gi|408403436|ref|YP_006861419.1|	-	0.033	14.1	3.7	0.27	11.2	3.7	2.2	1	1	0	1	1	1	0	Nudix	N-terminal
Zn_ribbon_SprT	PF17283.2	gi|408403436|ref|YP_006861419.1|	-	0.041	13.8	0.0	0.074	13.0	0.0	1.4	1	0	0	1	1	1	0	SprT-like	zinc	ribbon	domain
zf-IS66	PF13005.7	gi|408403436|ref|YP_006861419.1|	-	0.053	13.9	0.7	1.4	9.4	0.1	2.1	2	0	0	2	2	2	0	zinc-finger	binding	domain	of	transposase	IS66
DZR	PF12773.7	gi|408403436|ref|YP_006861419.1|	-	0.055	13.5	2.3	0.19	11.8	2.3	1.8	1	1	0	1	1	1	0	Double	zinc	ribbon
DUF2318	PF10080.9	gi|408403436|ref|YP_006861419.1|	-	0.059	13.5	0.2	0.07	13.2	0.2	1.1	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2318)
Lar_restr_allev	PF14354.6	gi|408403436|ref|YP_006861419.1|	-	0.065	13.6	0.8	0.13	12.7	0.8	1.6	1	1	0	1	1	1	0	Restriction	alleviation	protein	Lar
Vps36-NZF-N	PF16988.5	gi|408403436|ref|YP_006861419.1|	-	0.083	12.3	0.2	0.26	10.7	0.2	1.9	1	1	0	1	1	1	0	Vacuolar	protein	sorting	36	NZF-N	zinc-finger	domain
Prim_Zn_Ribbon	PF08273.12	gi|408403436|ref|YP_006861419.1|	-	0.093	13.0	2.8	0.26	11.6	2.8	1.7	1	1	0	1	1	1	0	Zinc-binding	domain	of	primase-helicase
zf-NADH-PPase	PF09297.11	gi|408403436|ref|YP_006861419.1|	-	0.1	12.3	1.0	0.93	9.2	0.2	2.2	2	0	0	2	2	2	0	NADH	pyrophosphatase	zinc	ribbon	domain
PADR1	PF08063.12	gi|408403436|ref|YP_006861419.1|	-	0.11	12.3	1.4	0.19	11.5	1.4	1.4	1	0	0	1	1	1	0	PADR1	(NUC008)	domain
zinc_ribbon_2	PF13240.6	gi|408403436|ref|YP_006861419.1|	-	0.33	10.7	0.5	0.33	10.7	0.5	2.3	2	0	0	2	2	2	0	zinc-ribbon	domain
RNA_POL_M_15KD	PF02150.16	gi|408403436|ref|YP_006861419.1|	-	0.73	9.8	5.1	2.2	8.2	5.1	1.8	1	1	0	1	1	1	0	RNA	polymerases	M/15	Kd	subunit
AsnC_trans_reg	PF01037.21	gi|408403437|ref|YP_006861420.1|	-	1.1e-14	54.2	0.1	1.6e-14	53.6	0.1	1.3	1	0	0	1	1	1	1	Lrp/AsnC	ligand	binding	domain
HTH_AsnC-type	PF13404.6	gi|408403437|ref|YP_006861420.1|	-	4.6e-13	48.8	0.6	9.5e-13	47.8	0.6	1.5	1	0	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
HTH_24	PF13412.6	gi|408403437|ref|YP_006861420.1|	-	1e-11	44.2	0.3	2.2e-11	43.1	0.3	1.6	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_20	PF12840.7	gi|408403437|ref|YP_006861420.1|	-	3.8e-06	26.9	0.1	1.2e-05	25.3	0.1	1.7	1	0	0	1	1	1	1	Helix-turn-helix	domain
MarR_2	PF12802.7	gi|408403437|ref|YP_006861420.1|	-	1.1e-05	25.2	0.2	2.7e-05	23.9	0.1	1.7	2	0	0	2	2	2	1	MarR	family
HTH_5	PF01022.20	gi|408403437|ref|YP_006861420.1|	-	3.2e-05	23.7	0.0	5.9e-05	22.9	0.0	1.5	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_IclR	PF09339.10	gi|408403437|ref|YP_006861420.1|	-	0.00043	20.0	0.0	0.00089	19.0	0.0	1.5	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
MarR	PF01047.22	gi|408403437|ref|YP_006861420.1|	-	0.00055	19.8	0.4	0.0041	17.0	0.2	2.3	2	0	0	2	2	2	1	MarR	family
HTH_11	PF08279.12	gi|408403437|ref|YP_006861420.1|	-	0.00064	19.6	0.3	0.0016	18.4	0.1	1.9	2	0	0	2	2	2	1	HTH	domain
HTH_34	PF13601.6	gi|408403437|ref|YP_006861420.1|	-	0.00099	19.2	0.2	0.034	14.3	0.0	2.3	2	0	0	2	2	2	1	Winged	helix	DNA-binding	domain
GerE	PF00196.19	gi|408403437|ref|YP_006861420.1|	-	0.0043	16.6	0.0	0.011	15.3	0.0	1.6	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	luxR	family
Sigma70_r4_2	PF08281.12	gi|408403437|ref|YP_006861420.1|	-	0.0071	16.0	0.1	0.017	14.8	0.1	1.7	1	0	0	1	1	1	1	Sigma-70,	region	4
RepL	PF05732.11	gi|408403437|ref|YP_006861420.1|	-	0.018	14.5	0.5	0.73	9.2	0.0	2.1	2	0	0	2	2	2	0	Firmicute	plasmid	replication	protein	(RepL)
Sigma70_r4	PF04545.16	gi|408403437|ref|YP_006861420.1|	-	0.021	14.3	0.0	0.041	13.4	0.0	1.5	1	0	0	1	1	1	0	Sigma-70,	region	4
Fe_dep_repress	PF01325.19	gi|408403437|ref|YP_006861420.1|	-	0.063	13.5	0.2	0.4	10.9	0.0	2.1	2	0	0	2	2	2	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
TrmB	PF01978.19	gi|408403437|ref|YP_006861420.1|	-	0.065	13.1	0.0	0.13	12.1	0.0	1.5	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
HTH_27	PF13463.6	gi|408403437|ref|YP_006861420.1|	-	0.075	13.5	0.1	0.56	10.7	0.0	2.1	2	0	0	2	2	2	0	Winged	helix	DNA-binding	domain
HTH_10	PF04967.12	gi|408403437|ref|YP_006861420.1|	-	0.089	12.6	0.0	0.24	11.2	0.0	1.7	1	0	0	1	1	1	0	HTH	DNA	binding	domain
DUF2774	PF11242.8	gi|408403437|ref|YP_006861420.1|	-	0.11	12.8	0.0	0.36	11.1	0.0	1.9	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2774)
ATP_bind_3	PF01171.20	gi|408403438|ref|YP_006861421.1|	-	3.4e-20	72.6	0.0	5e-20	72.0	0.0	1.3	1	0	0	1	1	1	1	PP-loop	family
tRNA_Me_trans	PF03054.16	gi|408403438|ref|YP_006861421.1|	-	0.0034	16.2	0.4	0.0087	14.9	0.0	1.8	2	0	0	2	2	2	1	tRNA	methyl	transferase
RecR	PF02132.15	gi|408403438|ref|YP_006861421.1|	-	0.0066	16.0	12.8	0.048	13.2	1.4	3.8	4	0	0	4	4	4	2	RecR	protein
QueC	PF06508.13	gi|408403438|ref|YP_006861421.1|	-	0.053	13.0	0.0	0.17	11.4	0.0	1.9	1	0	0	1	1	1	0	Queuosine	biosynthesis	protein	QueC
C1_2	PF03107.16	gi|408403438|ref|YP_006861421.1|	-	0.15	12.4	0.5	0.15	12.4	0.5	3.3	3	0	0	3	3	3	0	C1	domain
CTU2	PF10288.9	gi|408403438|ref|YP_006861421.1|	-	0.15	12.3	5.3	0.2	11.9	0.4	2.9	3	0	0	3	3	3	0	Cytoplasmic	tRNA	2-thiolation	protein	2
zf-C4pol	PF14260.6	gi|408403438|ref|YP_006861421.1|	-	4.7	7.7	9.8	16	6.1	0.6	3.0	3	0	0	3	3	3	0	C4-type	zinc-finger	of	DNA	polymerase	delta
HemolysinCabind	PF00353.19	gi|408403439|ref|YP_006861422.1|	-	1.9e-63	209.9	158.9	1.9e-10	40.5	12.0	6.6	2	1	8	10	10	10	10	RTX	calcium-binding	nonapeptide	repeat	(4	copies)
ABM	PF03992.16	gi|408403440|ref|YP_006861423.1|	-	4e-08	33.3	0.0	5.1e-08	32.9	0.0	1.0	1	0	0	1	1	1	1	Antibiotic	biosynthesis	monooxygenase
Fibin	PF15819.5	gi|408403440|ref|YP_006861423.1|	-	0.077	12.8	0.1	0.084	12.6	0.1	1.0	1	0	0	1	1	1	0	Fin	bud	initiation	factor	homologue
Peptidase_M78	PF06114.13	gi|408403444|ref|YP_006861427.1|	-	0.096	12.6	0.0	0.1	12.6	0.0	1.1	1	0	0	1	1	1	0	IrrE	N-terminal-like	domain
HTH_45	PF14947.6	gi|408403445|ref|YP_006861428.1|	-	2.4e-22	78.7	1.2	2.9e-22	78.4	1.2	1.1	1	0	0	1	1	1	1	Winged	helix-turn-helix
DUF4364	PF14277.6	gi|408403445|ref|YP_006861428.1|	-	9.6e-05	22.2	0.4	0.0001	22.1	0.4	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4364)
HTH_27	PF13463.6	gi|408403445|ref|YP_006861428.1|	-	0.013	16.0	0.1	0.016	15.7	0.1	1.2	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
Paz_1	PF18349.1	gi|408403445|ref|YP_006861428.1|	-	0.033	14.1	0.1	0.055	13.4	0.0	1.4	1	1	0	1	1	1	0	PAZ	domain
Copper-bind	PF00127.20	gi|408403446|ref|YP_006861429.1|	-	2.2e-06	28.0	0.0	3.7e-06	27.3	0.0	1.3	1	0	0	1	1	1	1	Copper	binding	proteins,	plastocyanin/azurin	family
Cupredoxin_1	PF13473.6	gi|408403446|ref|YP_006861429.1|	-	1.6e-05	25.0	0.0	2.8e-05	24.1	0.0	1.4	1	0	0	1	1	1	1	Cupredoxin-like	domain
TrmB	PF01978.19	gi|408403448|ref|YP_006861431.1|	-	0.0013	18.5	0.1	0.0026	17.6	0.1	1.6	2	0	0	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
FUR	PF01475.19	gi|408403448|ref|YP_006861431.1|	-	0.0021	18.2	0.0	0.086	13.0	0.0	2.3	1	1	1	2	2	2	1	Ferric	uptake	regulator	family
DUF742	PF05331.11	gi|408403448|ref|YP_006861431.1|	-	0.0048	16.7	0.0	0.006	16.4	0.0	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF742)
HTH_IclR	PF09339.10	gi|408403448|ref|YP_006861431.1|	-	0.025	14.4	0.0	0.052	13.4	0.0	1.6	1	1	0	1	1	1	0	IclR	helix-turn-helix	domain
HTH_23	PF13384.6	gi|408403448|ref|YP_006861431.1|	-	0.18	11.6	0.1	0.45	10.4	0.0	1.7	2	0	0	2	2	2	0	Homeodomain-like	domain
FlaF	PF07309.11	gi|408403450|ref|YP_006861433.1|	-	0.0006	19.8	0.9	1.3	9.1	0.0	3.0	2	1	1	3	3	3	2	Flagellar	protein	FlaF
BORCS8	PF10167.9	gi|408403450|ref|YP_006861433.1|	-	0.5	10.3	10.8	1.8	8.6	0.1	5.0	5	1	0	6	6	6	0	BLOC-1-related	complex	sub-unit	8
Baculo_PEP_C	PF04513.12	gi|408403450|ref|YP_006861433.1|	-	0.93	9.5	19.1	0.67	10.0	1.5	4.8	2	1	2	4	4	4	0	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
ASD2	PF08687.11	gi|408403450|ref|YP_006861433.1|	-	4.5	6.8	7.7	0.76	9.3	0.3	2.7	3	0	0	3	3	3	0	Apx/Shroom	domain	ASD2
DUF4404	PF14357.6	gi|408403450|ref|YP_006861433.1|	-	6	7.6	6.8	5.7	7.7	0.2	3.7	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF4404)
DUF2120	PF09893.9	gi|408403450|ref|YP_006861433.1|	-	7.7	6.6	13.2	0.57	10.3	0.4	4.1	3	2	0	4	4	4	0	Uncharacterized	protein	conserved	in	archaea	(DUF2120)
GSCFA	PF08885.11	gi|408403451|ref|YP_006861434.1|	-	0.048	13.3	5.1	4.9	6.7	0.1	3.1	2	1	1	3	3	3	0	GSCFA	family
CdiI_2	PF18593.1	gi|408403451|ref|YP_006861434.1|	-	0.42	11.3	3.1	2.5	8.8	0.4	3.1	3	0	0	3	3	3	0	CdiI	immunity	protein
MatP_C	PF17414.2	gi|408403451|ref|YP_006861434.1|	-	1.7	8.9	5.2	33	4.7	0.4	3.4	3	0	0	3	3	3	0	MatP	C-terminal	ribbon-helix-helix	domain
LPP20	PF02169.16	gi|408403451|ref|YP_006861434.1|	-	6.9	7.1	9.6	0.48	10.8	2.3	2.8	3	1	0	3	3	3	0	LPP20	lipoprotein
Cep57_MT_bd	PF06657.13	gi|408403452|ref|YP_006861435.1|	-	0.061	13.8	0.7	0.63	10.5	0.0	2.6	3	0	0	3	3	3	0	Centrosome	microtubule-binding	domain	of	Cep57
Response_reg	PF00072.24	gi|408403455|ref|YP_006861438.1|	-	8.9e-08	32.3	0.1	9.7e-08	32.2	0.1	1.0	1	0	0	1	1	1	1	Response	regulator	receiver	domain
MEDS	PF14417.6	gi|408403456|ref|YP_006861439.1|	-	1.9e-09	37.6	0.0	2.3e-09	37.3	0.0	1.1	1	0	0	1	1	1	1	MEDS:	MEthanogen/methylotroph,	DcmR	Sensory	domain
Response_reg	PF00072.24	gi|408403457|ref|YP_006861440.1|	-	1.4e-14	54.2	0.1	1.6e-14	54.0	0.1	1.1	1	0	0	1	1	1	1	Response	regulator	receiver	domain
Acetyltransf_13	PF13880.6	gi|408403458|ref|YP_006861441.1|	-	0.069	13.1	0.0	0.077	13.0	0.0	1.2	1	0	0	1	1	1	0	ESCO1/2	acetyl-transferase
DAGK_cat	PF00781.24	gi|408403458|ref|YP_006861441.1|	-	0.077	12.6	0.0	0.087	12.4	0.0	1.1	1	0	0	1	1	1	0	Diacylglycerol	kinase	catalytic	domain
HIPIP	PF01355.17	gi|408403461|ref|YP_006861444.1|	-	0.068	13.5	3.1	1.3	9.5	0.3	2.5	2	0	0	2	2	2	0	High	potential	iron-sulfur	protein
C1_1	PF00130.22	gi|408403461|ref|YP_006861444.1|	-	0.68	9.9	4.3	0.85	9.6	0.3	2.4	2	1	0	2	2	2	0	Phorbol	esters/diacylglycerol	binding	domain	(C1	domain)
YwcE	PF17368.2	gi|408403462|ref|YP_006861445.1|	-	0.44	11.2	2.9	0.84	10.3	2.9	1.4	1	0	0	1	1	1	0	Spore	morphogenesis	and	germination	YwcE
Pilin_N	PF07790.11	gi|408403462|ref|YP_006861445.1|	-	0.54	11.2	7.2	0.86	10.6	6.4	1.9	1	1	0	1	1	1	0	Archaeal	Type	IV	pilin,	N-terminal
ApoLp-III	PF07464.11	gi|408403464|ref|YP_006861447.1|	-	1.9e-05	24.8	10.7	3.2e-05	24.1	10.7	1.4	1	1	0	1	1	1	1	Apolipophorin-III	precursor	(apoLp-III)
HisKA_3	PF07730.13	gi|408403464|ref|YP_006861447.1|	-	0.00036	21.0	16.0	0.016	15.7	0.2	3.9	1	1	2	3	3	3	1	Histidine	kinase
TMP_2	PF06791.13	gi|408403464|ref|YP_006861447.1|	-	0.0012	18.5	15.6	0.0017	18.1	2.1	2.0	1	1	1	2	2	2	2	Prophage	tail	length	tape	measure	protein
YtxH	PF12732.7	gi|408403464|ref|YP_006861447.1|	-	0.01	16.3	16.5	2.8e+02	2.1	16.5	2.8	1	1	0	1	1	1	0	YtxH-like	protein
WXG100	PF06013.12	gi|408403464|ref|YP_006861447.1|	-	0.038	14.2	8.4	2.3	8.5	0.0	3.5	2	1	1	3	3	3	0	Proteins	of	100	residues	with	WXG
DUF883	PF05957.13	gi|408403464|ref|YP_006861447.1|	-	0.056	14.1	18.8	1.3	9.6	9.3	2.9	1	1	2	3	3	3	0	Bacterial	protein	of	unknown	function	(DUF883)
AIP3	PF03915.13	gi|408403464|ref|YP_006861447.1|	-	0.072	12.2	8.6	0.08	12.0	8.6	1.0	1	0	0	1	1	1	0	Actin	interacting	protein	3
DUF948	PF06103.11	gi|408403464|ref|YP_006861447.1|	-	0.15	12.4	10.2	59	4.0	10.2	2.9	1	1	0	1	1	1	0	Bacterial	protein	of	unknown	function	(DUF948)
Nre_C	PF04895.12	gi|408403464|ref|YP_006861447.1|	-	0.19	11.7	8.3	0.18	11.8	1.7	2.7	1	1	2	3	3	3	0	Archaeal	Nre,	C-terminal
DUF4423	PF14394.6	gi|408403464|ref|YP_006861447.1|	-	0.19	11.4	7.3	0.27	10.9	7.3	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4423)
4HB_MCP_1	PF12729.7	gi|408403464|ref|YP_006861447.1|	-	0.21	11.1	10.9	0.25	10.9	10.9	1.1	1	0	0	1	1	1	0	Four	helix	bundle	sensory	module	for	signal	transduction
ApoO	PF09769.9	gi|408403464|ref|YP_006861447.1|	-	0.22	11.5	7.7	0.78	9.7	2.5	2.2	1	1	1	2	2	2	0	Apolipoprotein	O
DUF1664	PF07889.12	gi|408403464|ref|YP_006861447.1|	-	0.27	11.3	5.9	0.38	10.8	1.1	2.1	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF1664)
Syntaxin_2	PF14523.6	gi|408403464|ref|YP_006861447.1|	-	0.64	10.4	6.7	0.7	10.3	2.6	2.5	1	1	1	2	2	2	0	Syntaxin-like	protein
Prominin	PF05478.11	gi|408403464|ref|YP_006861447.1|	-	0.66	7.9	5.2	0.39	8.6	0.5	1.8	1	1	1	2	2	2	0	Prominin
Fib_alpha	PF08702.10	gi|408403464|ref|YP_006861447.1|	-	0.71	10.1	7.8	5.5	7.2	0.7	2.5	1	1	1	2	2	2	0	Fibrinogen	alpha/beta	chain	family
Latarcin	PF10279.9	gi|408403464|ref|YP_006861447.1|	-	3.5	8.1	8.3	0.84	10.1	0.4	2.4	1	1	0	2	2	2	0	Latarcin	precursor
DUF2203	PF09969.9	gi|408403464|ref|YP_006861447.1|	-	4.9	7.9	13.5	1.9	9.2	1.4	2.1	1	1	1	2	2	2	0	Uncharacterized	conserved	protein	(DUF2203)
UPF0181	PF03701.14	gi|408403464|ref|YP_006861447.1|	-	8.2	6.1	8.9	16	5.2	0.8	3.1	3	1	0	3	3	3	0	Uncharacterised	protein	family	(UPF0181)
ALMT	PF11744.8	gi|408403464|ref|YP_006861447.1|	-	10	4.8	8.7	11	4.7	8.7	1.0	1	0	0	1	1	1	0	Aluminium	activated	malate	transporter
YtxH	PF12732.7	gi|408403465|ref|YP_006861448.1|	-	1.2e-05	25.7	11.0	0.13	12.8	0.2	3.2	3	0	0	3	3	3	3	YtxH-like	protein
Syntaxin-6_N	PF09177.11	gi|408403465|ref|YP_006861448.1|	-	0.0023	18.4	5.1	0.045	14.3	0.3	3.0	1	1	1	2	2	2	1	Syntaxin	6,	N-terminal
DUF2203	PF09969.9	gi|408403465|ref|YP_006861448.1|	-	0.0076	17.0	6.1	0.075	13.7	0.7	2.4	2	1	0	2	2	2	1	Uncharacterized	conserved	protein	(DUF2203)
APG17	PF04108.12	gi|408403465|ref|YP_006861448.1|	-	0.01	15.0	3.3	0.053	12.6	3.3	1.9	1	1	0	1	1	1	0	Autophagy	protein	Apg17
EzrA	PF06160.12	gi|408403465|ref|YP_006861448.1|	-	0.011	13.9	6.8	0.17	10.0	1.8	2.2	2	0	0	2	2	2	0	Septation	ring	formation	regulator,	EzrA
BAR_3_WASP_bdg	PF10456.9	gi|408403465|ref|YP_006861448.1|	-	0.018	14.5	0.9	0.043	13.3	0.2	1.8	2	0	0	2	2	2	0	WASP-binding	domain	of	Sorting	nexin	protein
DUF3958	PF13125.6	gi|408403465|ref|YP_006861448.1|	-	0.025	14.8	0.7	0.8	9.9	0.0	2.2	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3958)
Rx_N	PF18052.1	gi|408403465|ref|YP_006861448.1|	-	0.032	14.5	3.0	4.2	7.7	0.1	3.1	1	1	1	2	2	2	0	Rx	N-terminal	domain
DUF2379	PF09543.10	gi|408403465|ref|YP_006861448.1|	-	0.045	13.9	0.1	0.12	12.5	0.1	1.7	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2379)
DUF948	PF06103.11	gi|408403465|ref|YP_006861448.1|	-	0.047	13.9	9.0	1.5	9.1	1.1	3.6	2	2	0	2	2	2	0	Bacterial	protein	of	unknown	function	(DUF948)
Prominin	PF05478.11	gi|408403465|ref|YP_006861448.1|	-	0.047	11.6	3.0	0.77	7.6	0.2	2.0	2	0	0	2	2	2	0	Prominin
Bin3	PF06859.12	gi|408403465|ref|YP_006861448.1|	-	0.052	14.2	0.9	0.51	11.0	0.1	2.0	2	0	0	2	2	2	0	Bicoid-interacting	protein	3	(Bin3)
HeLo	PF14479.6	gi|408403465|ref|YP_006861448.1|	-	0.076	12.8	1.6	0.59	9.9	0.1	2.1	2	0	0	2	2	2	0	Prion-inhibition	and	propagation
HisKA_3	PF07730.13	gi|408403465|ref|YP_006861448.1|	-	0.12	12.9	2.3	61	4.2	0.0	4.1	2	1	1	4	4	4	0	Histidine	kinase
Exog_C	PF18026.1	gi|408403465|ref|YP_006861448.1|	-	0.13	12.4	0.7	0.39	10.8	0.3	2.1	2	0	0	2	2	2	0	Endo/exonuclease	(EXOG)	C-terminal	domain
mCpol	PF18182.1	gi|408403465|ref|YP_006861448.1|	-	0.14	12.5	2.6	8.7	6.7	0.2	2.9	2	2	1	3	3	3	0	minimal	CRISPR	polymerase	domain
ANAPC4	PF12896.7	gi|408403465|ref|YP_006861448.1|	-	0.27	10.7	2.3	8	5.9	0.1	2.5	2	1	0	2	2	2	0	Anaphase-promoting	complex,	cyclosome,	subunit	4
ISG65-75	PF11727.8	gi|408403465|ref|YP_006861448.1|	-	0.35	10.1	4.7	0.27	10.5	1.5	2.0	1	1	1	2	2	2	0	Invariant	surface	glycoprotein
DUF2884	PF11101.8	gi|408403465|ref|YP_006861448.1|	-	0.37	10.3	5.3	0.31	10.5	4.0	1.6	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF2884)
Occludin_ELL	PF07303.13	gi|408403465|ref|YP_006861448.1|	-	0.59	10.9	3.2	8.3	7.2	0.1	2.6	2	1	0	2	2	2	0	Occludin	homology	domain
GP3_package	PF16677.5	gi|408403465|ref|YP_006861448.1|	-	1.1	9.4	3.6	3.3	7.9	3.6	2.1	1	1	0	1	1	1	0	DNA-packaging	protein	gp3
DUF3887	PF13026.6	gi|408403465|ref|YP_006861448.1|	-	1.1	10.1	5.9	10	7.0	1.4	3.0	2	2	1	3	3	3	0	Protein	of	unknown	function	(DUF3887)
FlaC_arch	PF05377.11	gi|408403465|ref|YP_006861448.1|	-	5.9	7.4	11.5	6.3	7.3	0.3	3.6	2	2	1	3	3	3	0	Flagella	accessory	protein	C	(FlaC)
COG2	PF06148.11	gi|408403465|ref|YP_006861448.1|	-	7.1	6.7	8.0	16	5.6	1.1	2.8	2	2	0	2	2	2	0	COG	(conserved	oligomeric	Golgi)	complex	component,	COG2
HisKA_3	PF07730.13	gi|408403467|ref|YP_006861450.1|	-	0.053	14.1	0.1	0.053	14.1	0.1	4.1	1	1	2	3	3	3	0	Histidine	kinase
TMP_2	PF06791.13	gi|408403467|ref|YP_006861450.1|	-	0.45	10.1	20.6	1.7	8.3	5.6	2.2	1	1	1	2	2	2	0	Prophage	tail	length	tape	measure	protein
T3SS_basalb_I	PF17001.5	gi|408403467|ref|YP_006861450.1|	-	0.9	10.2	9.2	1.9	9.1	0.3	3.3	1	1	0	2	2	2	0	Type	III	secretion	basal	body	protein	I,	YscI,	HrpB,	PscI
Rx_N	PF18052.1	gi|408403467|ref|YP_006861450.1|	-	1.2	9.5	5.2	0.37	11.1	1.0	2.1	2	0	0	2	2	2	0	Rx	N-terminal	domain
HsbA	PF12296.8	gi|408403467|ref|YP_006861450.1|	-	1.7	9.1	11.9	5.1	7.6	11.6	1.9	1	1	0	1	1	1	0	Hydrophobic	surface	binding	protein	A
Response_reg	PF00072.24	gi|408403468|ref|YP_006861451.1|	-	6e-24	84.4	0.0	7e-24	84.2	0.0	1.1	1	0	0	1	1	1	1	Response	regulator	receiver	domain
Methyltransf_25	PF13649.6	gi|408403468|ref|YP_006861451.1|	-	0.17	12.6	0.0	0.27	12.0	0.0	1.4	1	1	0	1	1	1	0	Methyltransferase	domain
HATPase_c	PF02518.26	gi|408403470|ref|YP_006861453.1|	-	3.6e-24	85.4	0.4	9.7e-24	84.0	0.4	1.8	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HisKA	PF00512.25	gi|408403470|ref|YP_006861453.1|	-	1.1e-14	54.2	1.2	3.5e-14	52.6	0.7	2.3	2	0	0	2	2	2	1	His	Kinase	A	(phospho-acceptor)	domain
PLDc_2	PF13091.6	gi|408403470|ref|YP_006861453.1|	-	0.00042	20.2	0.4	0.017	15.0	0.1	2.9	2	0	0	2	2	2	1	PLD-like	domain
HATPase_c_3	PF13589.6	gi|408403470|ref|YP_006861453.1|	-	0.0024	17.7	0.1	0.0067	16.3	0.1	1.8	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
Gp-FAR-1	PF05823.12	gi|408403470|ref|YP_006861453.1|	-	0.18	12.2	4.0	0.12	12.7	0.5	2.6	3	0	0	3	3	3	0	Nematode	fatty	acid	retinoid	binding	protein	(Gp-FAR-1)
MEDS	PF14417.6	gi|408403471|ref|YP_006861454.1|	-	1.9e-18	66.8	0.0	2.5e-18	66.4	0.0	1.1	1	0	0	1	1	1	1	MEDS:	MEthanogen/methylotroph,	DcmR	Sensory	domain
ATPase	PF06745.13	gi|408403471|ref|YP_006861454.1|	-	4.7e-06	26.1	0.0	7.4e-06	25.5	0.0	1.4	1	0	0	1	1	1	1	KaiC
PhoD	PF09423.10	gi|408403472|ref|YP_006861455.1|	-	3.3e-09	36.2	0.4	3.2e-06	26.4	0.3	2.9	3	0	0	3	3	3	2	PhoD-like	phosphatase
CSD2	PF17876.1	gi|408403472|ref|YP_006861455.1|	-	0.035	14.3	0.1	0.2	11.9	0.0	2.1	2	0	0	2	2	2	0	Cold	shock	domain
XK-related	PF09815.9	gi|408403475|ref|YP_006861458.1|	-	0.024	13.7	3.6	0.026	13.6	3.6	1.2	1	0	0	1	1	1	0	XK-related	protein
HTH_5	PF01022.20	gi|408403476|ref|YP_006861459.1|	-	2e-10	40.3	0.0	3.7e-10	39.5	0.0	1.4	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_20	PF12840.7	gi|408403476|ref|YP_006861459.1|	-	4.5e-06	26.6	0.0	8.1e-06	25.8	0.0	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_45	PF14947.6	gi|408403476|ref|YP_006861459.1|	-	5.9e-05	23.0	0.3	0.00015	21.7	0.3	1.7	1	1	1	2	2	2	1	Winged	helix-turn-helix
HTH_24	PF13412.6	gi|408403476|ref|YP_006861459.1|	-	0.0004	19.9	0.1	0.002	17.6	0.0	2.1	2	1	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
TrmB	PF01978.19	gi|408403476|ref|YP_006861459.1|	-	0.00041	20.2	0.0	0.00069	19.5	0.0	1.4	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_11	PF08279.12	gi|408403476|ref|YP_006861459.1|	-	0.0085	16.0	0.0	0.015	15.3	0.0	1.4	1	0	0	1	1	1	1	HTH	domain
MarR_2	PF12802.7	gi|408403476|ref|YP_006861459.1|	-	0.016	15.1	0.0	0.026	14.4	0.0	1.4	1	0	0	1	1	1	0	MarR	family
HTH_29	PF13551.6	gi|408403476|ref|YP_006861459.1|	-	0.048	13.7	0.0	0.092	12.8	0.0	1.5	2	0	0	2	2	2	0	Winged	helix-turn	helix
B-block_TFIIIC	PF04182.12	gi|408403476|ref|YP_006861459.1|	-	0.075	13.2	0.1	0.16	12.1	0.0	1.6	2	0	0	2	2	2	0	B-block	binding	subunit	of	TFIIIC
Phage_rep_org_N	PF09681.10	gi|408403476|ref|YP_006861459.1|	-	0.092	12.7	0.0	0.17	11.8	0.0	1.4	1	1	0	1	1	1	0	N-terminal	phage	replisome	organiser	(Phage_rep_org_N)
Nup35_RRM	PF05172.13	gi|408403476|ref|YP_006861459.1|	-	0.095	12.7	0.0	0.15	12.0	0.0	1.3	1	0	0	1	1	1	0	Nup53/35/40-type	RNA	recognition	motif
TnsD	PF15978.5	gi|408403476|ref|YP_006861459.1|	-	0.098	11.6	0.0	0.11	11.5	0.0	1.1	1	0	0	1	1	1	0	Tn7-like	transposition	protein	D
LexA_DNA_bind	PF01726.16	gi|408403476|ref|YP_006861459.1|	-	0.1	12.4	0.0	0.17	11.7	0.0	1.4	1	0	0	1	1	1	0	LexA	DNA	binding	domain
Fe_dep_repress	PF01325.19	gi|408403476|ref|YP_006861459.1|	-	0.16	12.2	0.0	0.9	9.8	0.0	2.0	1	1	1	2	2	2	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
DprA_WH	PF17782.1	gi|408403476|ref|YP_006861459.1|	-	0.23	11.6	0.0	0.37	10.9	0.0	1.3	1	0	0	1	1	1	0	DprA	winged	helix	domain
DUF4265	PF14085.6	gi|408403477|ref|YP_006861460.1|	-	0.14	12.1	0.4	1.2	9.1	0.0	2.3	2	1	0	2	2	2	0	Domain	of	unknown	function	(DUF4265)
PAC2	PF09754.9	gi|408403482|ref|YP_006861465.1|	-	4.3e-38	131.5	0.0	5.6e-38	131.1	0.0	1.2	1	0	0	1	1	1	1	PAC2	family
HATPase_c	PF02518.26	gi|408403484|ref|YP_006861467.1|	-	1.4e-27	96.4	0.5	3.9e-27	95.0	0.2	2.0	2	0	0	2	2	2	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
dCache_1	PF02743.18	gi|408403484|ref|YP_006861467.1|	-	1.1e-21	77.8	0.8	4e-21	75.9	0.2	2.1	2	0	0	2	2	2	1	Cache	domain
HisKA	PF00512.25	gi|408403484|ref|YP_006861467.1|	-	4.1e-12	45.9	0.5	4.1e-12	45.9	0.5	2.8	4	0	0	4	4	4	1	His	Kinase	A	(phospho-acceptor)	domain
HATPase_c_5	PF14501.6	gi|408403484|ref|YP_006861467.1|	-	4.6e-05	23.3	0.0	0.00014	21.7	0.0	1.9	1	0	0	1	1	1	1	GHKL	domain
HATPase_c_3	PF13589.6	gi|408403484|ref|YP_006861467.1|	-	0.0021	17.9	0.1	0.01	15.6	0.0	2.2	2	0	0	2	2	2	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
CHASE	PF03924.13	gi|408403484|ref|YP_006861467.1|	-	0.004	17.1	0.0	0.0086	16.0	0.0	1.5	1	0	0	1	1	1	1	CHASE	domain
PTS_IIA	PF02255.16	gi|408403484|ref|YP_006861467.1|	-	0.0041	17.1	1.1	0.013	15.5	1.1	1.8	1	0	0	1	1	1	1	PTS	system,	Lactose/Cellobiose	specific	IIA	subunit
dCache_3	PF14827.6	gi|408403484|ref|YP_006861467.1|	-	0.0043	16.7	0.2	0.048	13.3	0.1	2.5	2	1	0	2	2	2	1	Double	sensory	domain	of	two-component	sensor	kinase
HATPase_c_2	PF13581.6	gi|408403484|ref|YP_006861467.1|	-	0.037	14.0	0.0	0.085	12.8	0.0	1.7	1	0	0	1	1	1	0	Histidine	kinase-like	ATPase	domain
Blt1	PF12754.7	gi|408403484|ref|YP_006861467.1|	-	0.057	13.7	0.2	0.35	11.2	0.1	2.1	2	0	0	2	2	2	0	Blt1	N-terminal	domain
sCache_3_2	PF17203.4	gi|408403484|ref|YP_006861467.1|	-	0.074	13.2	0.1	0.51	10.5	0.0	2.5	3	1	0	3	3	3	0	Single	cache	domain	3
OrfB_Zn_ribbon	PF07282.11	gi|408403485|ref|YP_006861468.1|	-	3.9e-22	77.9	0.3	9.4e-22	76.7	0.3	1.7	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
OrfB_IS605	PF01385.19	gi|408403485|ref|YP_006861468.1|	-	2.9e-18	66.2	1.4	6.8e-18	65.0	1.4	1.6	1	0	0	1	1	1	1	Probable	transposase
HTH_OrfB_IS605	PF12323.8	gi|408403485|ref|YP_006861468.1|	-	1.1e-14	53.7	1.2	3.5e-14	52.0	1.2	2.0	1	0	0	1	1	1	1	Helix-turn-helix	domain
HypA	PF01155.19	gi|408403485|ref|YP_006861468.1|	-	0.0029	17.6	0.1	0.0078	16.2	0.1	1.7	1	0	0	1	1	1	1	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
Rpr2	PF04032.16	gi|408403485|ref|YP_006861468.1|	-	0.005	17.1	3.5	4.8	7.5	0.0	3.6	2	1	1	3	3	3	2	RNAse	P	Rpr2/Rpp21/SNM1	subunit	domain
DZR	PF12773.7	gi|408403485|ref|YP_006861468.1|	-	0.014	15.4	0.8	0.033	14.2	0.8	1.5	1	0	0	1	1	1	0	Double	zinc	ribbon
FYVE	PF01363.21	gi|408403485|ref|YP_006861468.1|	-	0.017	15.3	0.1	0.055	13.6	0.0	1.9	2	0	0	2	2	2	0	FYVE	zinc	finger
zf_UBZ	PF18439.1	gi|408403485|ref|YP_006861468.1|	-	0.038	13.6	1.9	0.33	10.6	0.1	2.4	1	1	1	2	2	2	0	Ubiquitin-Binding	Zinc	Finger
zinc_ribbon_2	PF13240.6	gi|408403485|ref|YP_006861468.1|	-	0.061	13.1	0.8	7.5	6.4	0.1	2.5	2	0	0	2	2	2	0	zinc-ribbon	domain
zf-ribbon_3	PF13248.6	gi|408403485|ref|YP_006861468.1|	-	0.14	11.7	3.2	1.7	8.1	3.4	2.3	1	1	1	2	2	2	0	zinc-ribbon	domain
Zn_ribbon_SprT	PF17283.2	gi|408403485|ref|YP_006861468.1|	-	9.4	6.2	9.9	0.15	12.0	2.2	2.1	2	0	0	2	2	2	0	SprT-like	zinc	ribbon	domain
HATPase_c	PF02518.26	gi|408403486|ref|YP_006861469.1|	-	1.2e-28	99.9	0.0	2.2e-28	99.0	0.0	1.5	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
dCache_1	PF02743.18	gi|408403486|ref|YP_006861469.1|	-	3.9e-19	69.4	0.4	3.9e-19	69.4	0.4	1.7	2	0	0	2	2	2	1	Cache	domain
HisKA	PF00512.25	gi|408403486|ref|YP_006861469.1|	-	8.9e-11	41.7	0.1	8.9e-11	41.7	0.1	2.5	3	0	0	3	3	3	1	His	Kinase	A	(phospho-acceptor)	domain
HATPase_c_5	PF14501.6	gi|408403486|ref|YP_006861469.1|	-	7.2e-05	22.6	0.1	0.00094	19.1	0.0	2.5	2	0	0	2	2	2	1	GHKL	domain
HATPase_c_3	PF13589.6	gi|408403486|ref|YP_006861469.1|	-	0.00048	20.0	0.0	0.0012	18.7	0.0	1.7	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HATPase_c_2	PF13581.6	gi|408403486|ref|YP_006861469.1|	-	0.00062	19.7	0.0	0.0014	18.6	0.0	1.6	1	0	0	1	1	1	1	Histidine	kinase-like	ATPase	domain
IL1	PF00340.19	gi|408403486|ref|YP_006861469.1|	-	0.19	11.4	1.8	0.19	11.4	0.2	1.9	2	0	0	2	2	2	0	Interleukin-1	/	18
DUF948	PF06103.11	gi|408403486|ref|YP_006861469.1|	-	0.43	10.9	6.1	5.6	7.3	3.0	3.2	3	1	0	3	3	3	0	Bacterial	protein	of	unknown	function	(DUF948)
DUF4852	PF16144.5	gi|408403486|ref|YP_006861469.1|	-	0.52	10.4	2.7	0.91	9.7	0.2	2.4	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF4852)
DUF4446	PF14584.6	gi|408403486|ref|YP_006861469.1|	-	9.4	6.2	10.5	2	8.4	1.7	3.0	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF4446)
Big_9	PF17963.1	gi|408403487|ref|YP_006861470.1|	-	1.6e-66	221.0	72.8	4.2e-22	78.7	18.5	5.8	6	1	0	6	6	6	4	Bacterial	Ig	domain
Cadherin_5	PF17892.1	gi|408403487|ref|YP_006861470.1|	-	3.6e-41	139.1	51.0	2.2e-16	59.6	9.4	5.5	5	1	1	6	6	6	4	Cadherin-like	domain
Cadherin_4	PF17803.1	gi|408403487|ref|YP_006861470.1|	-	1.6e-32	112.0	76.0	1.1e-14	54.7	15.0	7.3	6	2	0	6	6	6	4	Bacterial	cadherin-like	domain
HemolysinCabind	PF00353.19	gi|408403487|ref|YP_006861470.1|	-	7e-29	99.4	125.6	1.1e-09	38.1	22.3	5.0	1	1	3	5	5	5	5	RTX	calcium-binding	nonapeptide	repeat	(4	copies)
Cadherin_3	PF16184.5	gi|408403487|ref|YP_006861470.1|	-	7.3e-09	35.6	16.8	8.9e-05	22.5	0.3	5.4	4	2	1	5	5	5	3	Cadherin-like
GspH	PF12019.8	gi|408403487|ref|YP_006861470.1|	-	0.037	14.4	13.1	0.34	11.3	2.9	4.4	3	1	1	4	4	4	0	Type	II	transport	protein	GspH
HYR	PF02494.16	gi|408403487|ref|YP_006861470.1|	-	0.07	13.5	8.7	5.1	7.5	0.7	3.9	2	1	1	3	3	3	0	HYR	domain
Response_reg	PF00072.24	gi|408403488|ref|YP_006861471.1|	-	8.2e-23	80.7	0.1	1.4e-22	79.9	0.1	1.4	1	0	0	1	1	1	1	Response	regulator	receiver	domain
Tub_N	PF16322.5	gi|408403489|ref|YP_006861472.1|	-	0.19	12.1	25.3	0.32	11.4	25.3	1.3	1	0	0	1	1	1	0	Tubby	N-terminal
V4R	PF02830.18	gi|408403490|ref|YP_006861473.1|	-	2.5e-09	37.0	0.0	4.4e-09	36.2	0.0	1.4	1	0	0	1	1	1	1	V4R	domain
HTH_24	PF13412.6	gi|408403490|ref|YP_006861473.1|	-	8.5e-05	22.0	0.0	0.00018	21.0	0.0	1.6	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_5	PF01022.20	gi|408403490|ref|YP_006861473.1|	-	0.00098	18.9	0.0	0.0016	18.3	0.0	1.4	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_CodY	PF08222.11	gi|408403490|ref|YP_006861473.1|	-	0.032	13.8	0.2	0.077	12.6	0.2	1.6	1	0	0	1	1	1	0	CodY	helix-turn-helix	domain
Rrf2	PF02082.20	gi|408403490|ref|YP_006861473.1|	-	0.055	13.8	0.1	0.11	12.9	0.1	1.5	1	0	0	1	1	1	0	Transcriptional	regulator
HTH_Crp_2	PF13545.6	gi|408403490|ref|YP_006861473.1|	-	0.07	13.1	0.0	0.15	12.0	0.0	1.5	1	0	0	1	1	1	0	Crp-like	helix-turn-helix	domain
HTH_IclR	PF09339.10	gi|408403490|ref|YP_006861473.1|	-	0.078	12.8	0.0	0.23	11.3	0.0	1.7	2	0	0	2	2	2	0	IclR	helix-turn-helix	domain
HTH_11	PF08279.12	gi|408403490|ref|YP_006861473.1|	-	0.098	12.6	0.0	0.23	11.4	0.0	1.6	1	0	0	1	1	1	0	HTH	domain
DDE_Tnp_1	PF01609.21	gi|408403492|ref|YP_006861475.1|	-	0.00055	19.6	0.1	0.00061	19.5	0.1	1.1	1	0	0	1	1	1	1	Transposase	DDE	domain
Methyltrn_RNA_4	PF09936.9	gi|408403492|ref|YP_006861475.1|	-	0.013	15.3	0.2	0.017	15.0	0.2	1.1	1	0	0	1	1	1	0	SAM-dependent	RNA	methyltransferase
MetOD2	PF18548.1	gi|408403495|ref|YP_006861478.1|	-	0.093	12.8	0.0	0.14	12.2	0.0	1.3	1	0	0	1	1	1	0	Metanogen	output	domain	2
OrfB_Zn_ribbon	PF07282.11	gi|408403497|ref|YP_006861480.1|	-	1.9e-21	75.7	0.8	4.3e-21	74.6	0.8	1.7	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
OrfB_IS605	PF01385.19	gi|408403497|ref|YP_006861480.1|	-	8.5e-19	67.9	1.2	2.2e-18	66.6	1.2	1.7	1	0	0	1	1	1	1	Probable	transposase
TF_Zn_Ribbon	PF08271.12	gi|408403497|ref|YP_006861480.1|	-	0.042	13.4	0.0	0.12	11.9	0.0	1.7	1	0	0	1	1	1	0	TFIIB	zinc-binding
Rpr2	PF04032.16	gi|408403497|ref|YP_006861480.1|	-	1.6	9.1	10.7	28	5.1	4.2	3.7	2	1	1	3	3	3	0	RNAse	P	Rpr2/Rpp21/SNM1	subunit	domain
LPP20	PF02169.16	gi|408403498|ref|YP_006861481.1|	-	0.1	13.0	1.0	0.9	9.9	0.1	2.1	1	1	1	2	2	2	0	LPP20	lipoprotein
DUF3188	PF11384.8	gi|408403500|ref|YP_006861483.1|	-	0.011	15.4	0.4	0.017	14.8	0.4	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3188)
DUF3797	PF12677.7	gi|408403501|ref|YP_006861484.1|	-	0.0035	17.2	0.7	0.0035	17.2	0.7	2.3	1	1	1	2	2	2	1	Domain	of	unknown	function	(DUF3797)
OrfB_Zn_ribbon	PF07282.11	gi|408403502|ref|YP_006861485.1|	-	6.9e-20	70.7	0.2	1.6e-19	69.6	0.2	1.7	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
OrfB_IS605	PF01385.19	gi|408403502|ref|YP_006861485.1|	-	3.1e-16	59.7	0.5	8e-16	58.3	0.5	1.6	1	0	0	1	1	1	1	Probable	transposase
TF_Zn_Ribbon	PF08271.12	gi|408403502|ref|YP_006861485.1|	-	0.0011	18.4	0.1	0.12	11.9	0.0	2.5	2	0	0	2	2	2	1	TFIIB	zinc-binding
HypA	PF01155.19	gi|408403502|ref|YP_006861485.1|	-	0.0058	16.6	0.1	0.016	15.2	0.1	1.7	1	0	0	1	1	1	1	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
DZR	PF12773.7	gi|408403502|ref|YP_006861485.1|	-	0.0096	15.9	0.5	0.022	14.8	0.5	1.5	1	0	0	1	1	1	1	Double	zinc	ribbon
FYVE	PF01363.21	gi|408403502|ref|YP_006861485.1|	-	0.051	13.7	0.1	0.19	11.9	0.0	2.0	2	0	0	2	2	2	0	FYVE	zinc	finger
zf-Mss51	PF13824.6	gi|408403502|ref|YP_006861485.1|	-	0.086	12.9	1.8	0.28	11.3	0.1	2.6	1	1	1	2	2	2	0	Zinc-finger	of	mitochondrial	splicing	suppressor	51
zinc_ribbon_2	PF13240.6	gi|408403502|ref|YP_006861485.1|	-	0.13	12.0	1.7	16	5.4	0.4	2.5	2	0	0	2	2	2	0	zinc-ribbon	domain
zf_UBZ	PF18439.1	gi|408403502|ref|YP_006861485.1|	-	0.2	11.2	1.4	4.3	7.0	0.1	2.4	1	1	1	2	2	2	0	Ubiquitin-Binding	Zinc	Finger
zf-ribbon_3	PF13248.6	gi|408403502|ref|YP_006861485.1|	-	0.69	9.4	2.9	7.4	6.1	3.0	2.3	1	1	1	2	2	2	0	zinc-ribbon	domain
Rpr2	PF04032.16	gi|408403502|ref|YP_006861485.1|	-	3.2	8.1	8.0	2.9	8.2	0.0	3.4	2	1	1	3	3	3	0	RNAse	P	Rpr2/Rpp21/SNM1	subunit	domain
DUF4376	PF14301.6	gi|408403503|ref|YP_006861486.1|	-	0.009	16.4	0.2	0.033	14.5	0.0	1.9	1	1	1	2	2	2	1	Domain	of	unknown	function	(DUF4376)
RNA_lig_T4_1	PF09511.10	gi|408403503|ref|YP_006861486.1|	-	0.067	13.0	0.1	0.088	12.7	0.1	1.2	1	0	0	1	1	1	0	RNA	ligase
TAN	PF11640.8	gi|408403503|ref|YP_006861486.1|	-	0.074	13.2	3.2	0.042	14.0	1.3	1.5	1	1	0	1	1	1	0	Telomere-length	maintenance	and	DNA	damage	repair
TFR_dimer	PF04253.15	gi|408403503|ref|YP_006861486.1|	-	0.087	12.9	0.5	0.29	11.3	0.4	1.9	1	1	0	1	1	1	0	Transferrin	receptor-like	dimerisation	domain
Enkurin	PF13864.6	gi|408403503|ref|YP_006861486.1|	-	0.41	11.1	3.6	0.62	10.5	1.3	2.3	2	1	1	3	3	3	0	Calmodulin-binding
Response_reg	PF00072.24	gi|408403504|ref|YP_006861487.1|	-	3e-11	43.5	0.4	3.4e-11	43.3	0.4	1.0	1	0	0	1	1	1	1	Response	regulator	receiver	domain
APS_kinase	PF01583.20	gi|408403506|ref|YP_006861489.1|	-	3.2e-61	205.8	0.0	3.7e-61	205.6	0.0	1.0	1	0	0	1	1	1	1	Adenylylsulphate	kinase
KTI12	PF08433.10	gi|408403506|ref|YP_006861489.1|	-	1.9e-09	37.4	0.0	2.3e-09	37.1	0.0	1.1	1	0	0	1	1	1	1	Chromatin	associated	protein	KTI12
AAA_33	PF13671.6	gi|408403506|ref|YP_006861489.1|	-	1.2e-08	35.3	0.0	1.8e-08	34.6	0.0	1.4	1	1	0	1	1	1	1	AAA	domain
AAA_18	PF13238.6	gi|408403506|ref|YP_006861489.1|	-	1.5e-07	32.0	0.0	2.2e-07	31.5	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
CbiA	PF01656.23	gi|408403506|ref|YP_006861489.1|	-	0.00015	21.8	0.0	0.00019	21.5	0.0	1.2	1	0	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
AAA_17	PF13207.6	gi|408403506|ref|YP_006861489.1|	-	0.00053	20.4	0.0	0.00094	19.6	0.0	1.6	1	1	0	1	1	1	1	AAA	domain
MeaB	PF03308.16	gi|408403506|ref|YP_006861489.1|	-	0.00063	18.8	0.1	0.0015	17.5	0.1	1.6	1	1	1	2	2	2	1	Methylmalonyl	Co-A	mutase-associated	GTPase	MeaB
Zeta_toxin	PF06414.12	gi|408403506|ref|YP_006861489.1|	-	0.00063	19.1	0.0	0.00092	18.5	0.0	1.3	1	0	0	1	1	1	1	Zeta	toxin
NTPase_1	PF03266.15	gi|408403506|ref|YP_006861489.1|	-	0.00073	19.5	0.0	0.001	19.0	0.0	1.3	1	0	0	1	1	1	1	NTPase
AAA_30	PF13604.6	gi|408403506|ref|YP_006861489.1|	-	0.0027	17.4	0.0	0.0032	17.2	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
ABC_tran	PF00005.27	gi|408403506|ref|YP_006861489.1|	-	0.0027	18.2	0.0	0.0029	18.1	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
CPT	PF07931.12	gi|408403506|ref|YP_006861489.1|	-	0.0031	17.4	0.1	0.038	13.8	0.1	2.3	1	1	0	1	1	1	1	Chloramphenicol	phosphotransferase-like	protein
SRP54	PF00448.22	gi|408403506|ref|YP_006861489.1|	-	0.0048	16.6	0.0	0.0068	16.1	0.0	1.3	1	0	0	1	1	1	1	SRP54-type	protein,	GTPase	domain
ParA	PF10609.9	gi|408403506|ref|YP_006861489.1|	-	0.0071	15.8	0.0	0.011	15.3	0.0	1.2	1	0	0	1	1	1	1	NUBPL	iron-transfer	P-loop	NTPase
Thymidylate_kin	PF02223.17	gi|408403506|ref|YP_006861489.1|	-	0.02	14.6	0.1	0.042	13.5	0.1	1.5	1	1	0	1	1	1	0	Thymidylate	kinase
6PF2K	PF01591.18	gi|408403506|ref|YP_006861489.1|	-	0.021	14.2	0.0	0.027	13.8	0.0	1.2	1	0	0	1	1	1	0	6-phosphofructo-2-kinase
AAA_31	PF13614.6	gi|408403506|ref|YP_006861489.1|	-	0.023	14.6	0.0	0.034	14.1	0.0	1.2	1	0	0	1	1	1	0	AAA	domain
dNK	PF01712.19	gi|408403506|ref|YP_006861489.1|	-	0.035	14.0	0.1	3.4	7.5	0.1	2.1	1	1	0	2	2	2	0	Deoxynucleoside	kinase
SKI	PF01202.22	gi|408403506|ref|YP_006861489.1|	-	0.064	13.4	0.0	0.12	12.5	0.0	1.6	1	1	0	1	1	1	0	Shikimate	kinase
AAA_16	PF13191.6	gi|408403506|ref|YP_006861489.1|	-	0.078	13.4	0.1	0.078	13.4	0.1	1.4	1	1	0	1	1	1	0	AAA	ATPase	domain
ATP_bind_1	PF03029.17	gi|408403506|ref|YP_006861489.1|	-	0.081	12.7	0.0	0.13	12.0	0.0	1.3	1	0	0	1	1	1	0	Conserved	hypothetical	ATP	binding	protein
MobB	PF03205.14	gi|408403506|ref|YP_006861489.1|	-	0.13	12.2	0.0	0.22	11.4	0.0	1.4	1	0	0	1	1	1	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
AAA	PF00004.29	gi|408403506|ref|YP_006861489.1|	-	0.13	12.7	0.0	0.16	12.4	0.0	1.4	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_22	PF13401.6	gi|408403506|ref|YP_006861489.1|	-	0.14	12.5	0.0	0.22	11.8	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
Torsin	PF06309.11	gi|408403506|ref|YP_006861489.1|	-	0.16	12.1	0.0	0.27	11.4	0.0	1.4	1	0	0	1	1	1	0	Torsin
cobW	PF02492.19	gi|408403506|ref|YP_006861489.1|	-	0.17	11.5	0.0	0.25	10.9	0.0	1.3	1	0	0	1	1	1	0	CobW/HypB/UreG,	nucleotide-binding	domain
OrfB_Zn_ribbon	PF07282.11	gi|408403507|ref|YP_006861490.1|	-	1e-21	76.6	0.2	1.9e-21	75.7	0.2	1.5	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
OrfB_IS605	PF01385.19	gi|408403507|ref|YP_006861490.1|	-	3.3e-19	69.3	0.4	3.3e-19	69.3	0.4	2.0	2	0	0	2	2	2	1	Probable	transposase
HTH_OrfB_IS605	PF12323.8	gi|408403507|ref|YP_006861490.1|	-	4.2e-14	51.8	0.0	1.6e-13	49.9	0.0	2.0	1	0	0	1	1	1	1	Helix-turn-helix	domain
TetR_C_19	PF17924.1	gi|408403507|ref|YP_006861490.1|	-	0.018	15.6	0.5	0.095	13.3	0.0	2.1	2	0	0	2	2	2	0	Tetracyclin	repressor-like,	C-terminal	domain
DUF2229	PF09989.9	gi|408403507|ref|YP_006861490.1|	-	0.24	11.0	2.7	0.12	12.0	0.3	1.7	2	0	0	2	2	2	0	CoA	enzyme	activase	uncharacterised	domain	(DUF2229)
Zn_Tnp_IS1595	PF12760.7	gi|408403507|ref|YP_006861490.1|	-	0.36	10.8	4.3	0.11	12.5	0.7	1.9	2	0	0	2	2	2	0	Transposase	zinc-ribbon	domain
Y1_Tnp	PF01797.16	gi|408403508|ref|YP_006861491.1|	-	1e-12	48.2	0.0	1.1e-12	48.1	0.0	1.0	1	0	0	1	1	1	1	Transposase	IS200	like
HATPase_c	PF02518.26	gi|408403509|ref|YP_006861492.1|	-	1.1e-25	90.3	0.1	2.4e-25	89.2	0.1	1.6	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
dCache_1	PF02743.18	gi|408403509|ref|YP_006861492.1|	-	5e-13	49.4	2.1	8.6e-13	48.6	2.1	1.4	1	0	0	1	1	1	1	Cache	domain
HisKA	PF00512.25	gi|408403509|ref|YP_006861492.1|	-	1e-09	38.2	2.4	1.8e-09	37.5	0.8	2.4	2	0	0	2	2	2	1	His	Kinase	A	(phospho-acceptor)	domain
LapA_dom	PF06305.11	gi|408403509|ref|YP_006861492.1|	-	0.015	15.1	2.4	0.3	10.9	0.5	2.8	2	0	0	2	2	2	0	Lipopolysaccharide	assembly	protein	A	domain
HATPase_c_3	PF13589.6	gi|408403509|ref|YP_006861492.1|	-	0.022	14.6	0.0	0.052	13.4	0.0	1.6	1	0	0	1	1	1	0	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
DUF1043	PF06295.12	gi|408403509|ref|YP_006861492.1|	-	0.035	14.1	3.8	1	9.4	0.1	3.1	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF1043)
FAM35_C	PF15793.5	gi|408403509|ref|YP_006861492.1|	-	0.064	12.6	0.1	0.37	10.2	0.0	2.1	2	0	0	2	2	2	0	Protein	family	FAM35,	C-terminal
HATPase_c_2	PF13581.6	gi|408403509|ref|YP_006861492.1|	-	0.069	13.1	0.0	0.14	12.1	0.0	1.4	1	0	0	1	1	1	0	Histidine	kinase-like	ATPase	domain
GNVR	PF13807.6	gi|408403509|ref|YP_006861492.1|	-	0.085	12.8	0.1	0.27	11.2	0.1	1.8	1	0	0	1	1	1	0	G-rich	domain	on	putative	tyrosine	kinase
UPF0154	PF03672.13	gi|408403509|ref|YP_006861492.1|	-	0.089	12.8	0.0	0.25	11.4	0.0	1.7	1	0	0	1	1	1	0	Uncharacterised	protein	family	(UPF0154)
DUF2681	PF10883.8	gi|408403509|ref|YP_006861492.1|	-	0.21	12.0	5.7	0.47	10.9	0.8	2.9	3	0	0	3	3	2	0	Protein	of	unknown	function	(DUF2681)
HWE_HK	PF07536.14	gi|408403509|ref|YP_006861492.1|	-	0.55	11.0	2.6	33	5.3	0.0	3.1	2	1	1	3	3	3	0	HWE	histidine	kinase
DDE_Tnp_1	PF01609.21	gi|408403510|ref|YP_006861493.1|	-	0.00033	20.4	0.0	0.00066	19.4	0.0	1.5	1	1	0	1	1	1	1	Transposase	DDE	domain
DUF772	PF05598.11	gi|408403510|ref|YP_006861493.1|	-	0.014	15.4	0.1	0.029	14.4	0.1	1.5	1	0	0	1	1	1	0	Transposase	domain	(DUF772)
DDE_Tnp_1_5	PF13737.6	gi|408403510|ref|YP_006861493.1|	-	0.12	12.7	0.0	0.31	11.4	0.0	1.7	1	1	0	1	1	1	0	Transposase	DDE	domain
Polysacc_deac_1	PF01522.21	gi|408403511|ref|YP_006861494.1|	-	5.6e-07	29.5	0.0	1.2e-06	28.4	0.0	1.5	1	0	0	1	1	1	1	Polysaccharide	deacetylase
Laminin_G_3	PF13385.6	gi|408403512|ref|YP_006861495.1|	-	4.2e-09	36.7	0.0	5.8e-09	36.3	0.0	1.1	1	0	0	1	1	1	1	Concanavalin	A-like	lectin/glucanases	superfamily
UL41A	PF17591.2	gi|408403512|ref|YP_006861495.1|	-	0.12	12.4	0.0	0.28	11.3	0.0	1.6	1	0	0	1	1	1	0	Herpesvirus	UL41A
rve	PF00665.26	gi|408403513|ref|YP_006861496.1|	-	3.1e-18	66.1	0.1	9.2e-18	64.6	0.0	1.7	2	0	0	2	2	2	1	Integrase	core	domain
rve_3	PF13683.6	gi|408403513|ref|YP_006861496.1|	-	1.9e-13	50.0	0.4	3.8e-13	49.0	0.4	1.5	1	0	0	1	1	1	1	Integrase	core	domain
rve_2	PF13333.6	gi|408403513|ref|YP_006861496.1|	-	0.0065	16.6	0.7	0.014	15.6	0.7	1.6	1	0	0	1	1	1	1	Integrase	core	domain
DDE_Tnp_IS240	PF13610.6	gi|408403513|ref|YP_006861496.1|	-	0.047	13.9	0.4	0.077	13.2	0.4	1.3	1	0	0	1	1	1	0	DDE	domain
HTH_AraC	PF00165.23	gi|408403513|ref|YP_006861496.1|	-	0.39	10.9	2.4	1.2	9.3	0.2	2.7	3	0	0	3	3	3	0	Bacterial	regulatory	helix-turn-helix	proteins,	AraC	family
HTH_32	PF13565.6	gi|408403514|ref|YP_006861497.1|	-	1.9e-13	50.8	0.4	2.8e-13	50.3	0.3	1.3	1	1	0	1	1	1	1	Homeodomain-like	domain
HTH_28	PF13518.6	gi|408403514|ref|YP_006861497.1|	-	1.6e-12	47.4	1.7	3e-10	40.0	0.2	2.2	2	0	0	2	2	2	2	Helix-turn-helix	domain
LZ_Tnp_IS481	PF13011.6	gi|408403514|ref|YP_006861497.1|	-	6.6e-12	45.8	0.1	2.9e-11	43.7	0.0	1.8	2	0	0	2	2	2	1	leucine-zipper	of	insertion	element	IS481
HTH_29	PF13551.6	gi|408403514|ref|YP_006861497.1|	-	4.1e-11	42.7	0.7	6.2e-09	35.7	0.1	2.2	2	0	0	2	2	2	2	Winged	helix-turn	helix
HTH_23	PF13384.6	gi|408403514|ref|YP_006861497.1|	-	4.1e-08	32.8	0.7	4.1e-05	23.2	0.1	2.3	2	0	0	2	2	2	2	Homeodomain-like	domain
HTH_33	PF13592.6	gi|408403514|ref|YP_006861497.1|	-	0.0012	18.5	0.4	0.0032	17.1	0.1	1.9	2	0	0	2	2	2	1	Winged	helix-turn	helix
Terminase_5	PF06056.12	gi|408403514|ref|YP_006861497.1|	-	0.015	15.2	0.1	0.036	14.0	0.0	1.7	2	0	0	2	2	2	0	Putative	ATPase	subunit	of	terminase	(gpP-like)
HTH_Tnp_IS630	PF01710.16	gi|408403514|ref|YP_006861497.1|	-	0.036	14.1	0.1	0.33	11.0	0.0	2.1	2	0	0	2	2	2	0	Transposase
FUR	PF01475.19	gi|408403514|ref|YP_006861497.1|	-	0.095	12.9	0.2	0.15	12.2	0.0	1.4	2	0	0	2	2	2	0	Ferric	uptake	regulator	family
HTH_Tnp_1_2	PF13022.6	gi|408403514|ref|YP_006861497.1|	-	0.15	12.2	0.0	0.2	11.8	0.0	1.4	1	0	0	1	1	1	0	Helix-turn-helix	of	insertion	element	transposase
HTH_7	PF02796.15	gi|408403514|ref|YP_006861497.1|	-	0.21	11.7	1.4	14	5.9	0.1	2.3	2	0	0	2	2	2	0	Helix-turn-helix	domain	of	resolvase
Glycos_transf_2	PF00535.26	gi|408403515|ref|YP_006861498.1|	-	1.9e-25	89.6	0.3	2.5e-25	89.3	0.3	1.2	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_tranf_2_3	PF13641.6	gi|408403515|ref|YP_006861498.1|	-	1.1e-07	32.0	0.0	1.7e-07	31.4	0.0	1.3	1	0	0	1	1	1	1	Glycosyltransferase	like	family	2
Glyco_tranf_2_4	PF13704.6	gi|408403515|ref|YP_006861498.1|	-	0.0022	18.5	0.0	0.0035	17.8	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_tranf_2_2	PF10111.9	gi|408403515|ref|YP_006861498.1|	-	0.0054	16.2	0.1	0.01	15.4	0.1	1.6	1	1	0	1	1	1	1	Glycosyltransferase	like	family	2
PrpR_N	PF06506.11	gi|408403515|ref|YP_006861498.1|	-	0.0058	16.2	0.1	0.71	9.4	0.2	2.5	1	1	1	2	2	2	2	Propionate	catabolism	activator
Glycos_transf_1	PF00534.20	gi|408403516|ref|YP_006861499.1|	-	2.2e-24	85.9	0.0	6.4e-24	84.4	0.0	1.8	2	0	0	2	2	2	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.6	gi|408403516|ref|YP_006861499.1|	-	1.9e-23	83.4	0.1	6.7e-23	81.6	0.0	1.9	2	0	0	2	2	2	1	Glycosyl	transferases	group	1
Glyco_transf_4	PF13439.6	gi|408403516|ref|YP_006861499.1|	-	1.2e-15	57.9	0.0	2.7e-15	56.8	0.0	1.5	1	0	0	1	1	1	1	Glycosyltransferase	Family	4
Glyco_trans_4_4	PF13579.6	gi|408403516|ref|YP_006861499.1|	-	1.5e-08	35.2	0.0	2.9e-08	34.3	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	transferase	4-like	domain
Glyco_trans_1_2	PF13524.6	gi|408403516|ref|YP_006861499.1|	-	6.8e-05	23.2	0.0	0.00017	21.9	0.0	1.7	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Epimerase_2	PF02350.19	gi|408403517|ref|YP_006861500.1|	-	2.5e-100	335.7	0.0	3.2e-100	335.4	0.0	1.0	1	0	0	1	1	1	1	UDP-N-acetylglucosamine	2-epimerase
DUF354	PF04007.12	gi|408403517|ref|YP_006861500.1|	-	4.5e-05	22.7	0.6	6.4e-05	22.2	0.6	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF354)
Transposase_20	PF02371.16	gi|408403519|ref|YP_006861502.1|	-	6.2e-24	84.1	0.0	1.2e-23	83.2	0.0	1.5	1	0	0	1	1	1	1	Transposase	IS116/IS110/IS902	family
DEDD_Tnp_IS110	PF01548.17	gi|408403519|ref|YP_006861502.1|	-	8.4e-17	61.5	1.3	2.5e-16	59.9	0.1	2.2	3	0	0	3	3	3	1	Transposase
DDE_Tnp_1_2	PF13586.6	gi|408403520|ref|YP_006861503.1|	-	3.6e-12	46.5	1.0	3.8e-12	46.4	1.0	1.0	1	0	0	1	1	1	1	Transposase	DDE	domain
DDE_Tnp_1	PF01609.21	gi|408403520|ref|YP_006861503.1|	-	0.00033	20.4	3.1	0.00035	20.3	3.1	1.0	1	0	0	1	1	1	1	Transposase	DDE	domain
DDE_Tnp_1_5	PF13737.6	gi|408403522|ref|YP_006861505.1|	-	0.049	13.9	0.1	0.58	10.5	0.0	2.4	1	1	1	2	2	2	0	Transposase	DDE	domain
Glycos_transf_1	PF00534.20	gi|408403525|ref|YP_006861508.1|	-	2.2e-21	76.2	0.0	3.5e-21	75.5	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.6	gi|408403525|ref|YP_006861508.1|	-	1e-20	74.6	0.0	1.6e-20	73.9	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_transf_4	PF13439.6	gi|408403525|ref|YP_006861508.1|	-	2e-09	37.7	0.0	4.8e-08	33.2	0.0	2.3	2	0	0	2	2	2	1	Glycosyltransferase	Family	4
Glyco_trans_1_2	PF13524.6	gi|408403525|ref|YP_006861508.1|	-	6.3e-05	23.3	0.0	0.00011	22.5	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_4_4	PF13579.6	gi|408403525|ref|YP_006861508.1|	-	0.00028	21.4	0.0	0.00039	20.9	0.0	1.4	1	1	0	1	1	1	1	Glycosyl	transferase	4-like	domain
Epimerase_2	PF02350.19	gi|408403525|ref|YP_006861508.1|	-	0.013	14.4	0.0	0.023	13.6	0.0	1.3	1	0	0	1	1	1	0	UDP-N-acetylglucosamine	2-epimerase
Polysacc_synt_C	PF14667.6	gi|408403526|ref|YP_006861509.1|	-	0.0014	18.7	9.4	0.0014	18.7	9.4	4.1	2	1	1	3	3	3	2	Polysaccharide	biosynthesis	C-terminal	domain
Polysacc_synt_3	PF13440.6	gi|408403526|ref|YP_006861509.1|	-	0.0027	17.0	13.0	0.0027	17.0	13.0	2.9	1	1	1	2	2	2	1	Polysaccharide	biosynthesis	protein
Polysacc_synt	PF01943.17	gi|408403526|ref|YP_006861509.1|	-	0.01	15.2	8.7	0.01	15.2	8.7	3.2	2	1	1	3	3	3	0	Polysaccharide	biosynthesis	protein
DUF3159	PF11361.8	gi|408403527|ref|YP_006861510.1|	-	0.098	12.4	0.0	0.12	12.2	0.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3159)
YdjM	PF04307.14	gi|408403529|ref|YP_006861512.1|	-	7.8e-10	38.3	8.2	1.4e-09	37.5	7.9	1.7	1	1	0	1	1	1	1	LexA-binding,	inner	membrane-associated	putative	hydrolase
MadL	PF03817.13	gi|408403529|ref|YP_006861512.1|	-	0.016	15.2	3.7	0.036	14.1	3.7	1.6	1	0	0	1	1	1	0	Malonate	transporter	MadL	subunit
TraL	PF07178.11	gi|408403529|ref|YP_006861512.1|	-	1.3	9.6	0.0	1.3	9.6	0.0	3.2	4	0	0	4	4	4	0	TraL	protein
Polysacc_deac_1	PF01522.21	gi|408403532|ref|YP_006861515.1|	-	6.8e-05	22.8	0.0	0.00012	22.0	0.0	1.3	1	0	0	1	1	1	1	Polysaccharide	deacetylase
MazE_antitoxin	PF04014.18	gi|408403533|ref|YP_006861516.1|	-	4e-08	33.0	0.2	5.5e-08	32.5	0.2	1.2	1	0	0	1	1	1	1	Antidote-toxin	recognition	MazE,	bacterial	antitoxin
PIN	PF01850.21	gi|408403534|ref|YP_006861517.1|	-	1.7e-06	28.6	0.1	2.4e-06	28.0	0.1	1.3	1	1	0	1	1	1	1	PIN	domain
OrfB_Zn_ribbon	PF07282.11	gi|408403535|ref|YP_006861518.1|	-	1.2e-16	60.4	0.3	1.6e-16	60.0	0.3	1.2	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
TF_Zn_Ribbon	PF08271.12	gi|408403535|ref|YP_006861518.1|	-	0.0038	16.7	2.7	0.057	12.9	2.5	2.3	1	1	1	2	2	2	1	TFIIB	zinc-binding
zf-TFIIB	PF13453.6	gi|408403535|ref|YP_006861518.1|	-	0.029	13.7	0.6	0.051	12.9	0.6	1.4	1	0	0	1	1	1	0	Transcription	factor	zinc-finger
Vps36-NZF-N	PF16988.5	gi|408403535|ref|YP_006861518.1|	-	0.05	13.0	0.6	2.3	7.7	0.0	2.2	1	1	1	2	2	2	0	Vacuolar	protein	sorting	36	NZF-N	zinc-finger	domain
zf-C2HC5	PF06221.13	gi|408403535|ref|YP_006861518.1|	-	1.3	9.1	4.5	8.8	6.4	0.2	2.5	2	1	1	3	3	3	0	Putative	zinc	finger	motif,	C2HC5-type
OrfB_IS605	PF01385.19	gi|408403536|ref|YP_006861519.1|	-	2.8e-19	69.5	0.2	2.8e-19	69.5	0.2	2.1	3	0	0	3	3	3	1	Probable	transposase
HTH_OrfB_IS605	PF12323.8	gi|408403536|ref|YP_006861519.1|	-	1.1e-13	50.4	0.0	2.7e-13	49.2	0.0	1.7	1	0	0	1	1	1	1	Helix-turn-helix	domain
DUF2229	PF09989.9	gi|408403536|ref|YP_006861519.1|	-	0.1	12.2	1.2	0.16	11.6	0.3	1.7	2	0	0	2	2	2	0	CoA	enzyme	activase	uncharacterised	domain	(DUF2229)
HTH_32	PF13565.6	gi|408403539|ref|YP_006861522.1|	-	1.4e-16	60.8	2.4	5.2e-16	59.0	0.6	2.1	1	1	1	2	2	2	1	Homeodomain-like	domain
HTH_33	PF13592.6	gi|408403539|ref|YP_006861522.1|	-	1e-15	57.1	1.3	2.3e-15	56.0	1.3	1.6	1	0	0	1	1	1	1	Winged	helix-turn	helix
HTH_23	PF13384.6	gi|408403539|ref|YP_006861522.1|	-	6.4e-09	35.4	3.0	2e-07	30.6	0.1	3.0	3	0	0	3	3	3	1	Homeodomain-like	domain
HTH_28	PF13518.6	gi|408403539|ref|YP_006861522.1|	-	9.6e-08	32.0	0.9	3.7e-06	27.0	0.1	2.2	2	0	0	2	2	2	1	Helix-turn-helix	domain
LZ_Tnp_IS481	PF13011.6	gi|408403539|ref|YP_006861522.1|	-	2.1e-07	31.3	0.4	4.4e-07	30.3	0.2	1.7	1	1	1	2	2	2	1	leucine-zipper	of	insertion	element	IS481
HTH_29	PF13551.6	gi|408403539|ref|YP_006861522.1|	-	2.2e-06	27.6	0.1	1.1e-05	25.3	0.0	2.1	2	1	0	2	2	2	1	Winged	helix-turn	helix
HTH_Tnp_Tc3_2	PF01498.18	gi|408403539|ref|YP_006861522.1|	-	0.019	15.2	0.3	0.041	14.1	0.3	1.6	1	0	0	1	1	1	0	Transposase
PIN	PF01850.21	gi|408403540|ref|YP_006861523.1|	-	6.1e-17	62.3	0.1	6.8e-17	62.1	0.1	1.0	1	0	0	1	1	1	1	PIN	domain
PIN_3	PF13470.6	gi|408403540|ref|YP_006861523.1|	-	0.013	16.2	0.0	0.023	15.5	0.0	1.4	1	1	0	1	1	1	0	PIN	domain
MazE_antitoxin	PF04014.18	gi|408403541|ref|YP_006861524.1|	-	0.00016	21.5	0.1	0.00026	20.8	0.1	1.4	1	0	0	1	1	1	1	Antidote-toxin	recognition	MazE,	bacterial	antitoxin
PrlF_antitoxin	PF15937.5	gi|408403541|ref|YP_006861524.1|	-	0.0018	18.7	0.1	0.0031	17.9	0.1	1.6	1	1	0	1	1	1	1	prlF	antitoxin	for	toxin	YhaV_toxin
ATP_bind_2	PF03668.15	gi|408403541|ref|YP_006861524.1|	-	0.03	13.6	0.3	0.031	13.6	0.3	1.0	1	0	0	1	1	1	0	P-loop	ATPase	protein	family
HTH_32	PF13565.6	gi|408403542|ref|YP_006861525.1|	-	1.5e-14	54.4	1.5	1.7e-14	54.2	0.7	1.5	2	0	0	2	2	1	1	Homeodomain-like	domain
HTH_28	PF13518.6	gi|408403542|ref|YP_006861525.1|	-	1.8e-13	50.4	1.0	1e-10	41.6	0.1	2.2	2	0	0	2	2	2	2	Helix-turn-helix	domain
HTH_23	PF13384.6	gi|408403542|ref|YP_006861525.1|	-	1e-12	47.5	1.8	6e-10	38.6	0.0	2.6	2	1	0	2	2	2	2	Homeodomain-like	domain
HTH_29	PF13551.6	gi|408403542|ref|YP_006861525.1|	-	1.8e-11	43.9	0.6	3.2e-09	36.7	0.0	2.2	2	0	0	2	2	2	1	Winged	helix-turn	helix
LZ_Tnp_IS481	PF13011.6	gi|408403542|ref|YP_006861525.1|	-	3.2e-10	40.4	0.3	2.9e-09	37.3	0.0	2.0	1	1	0	2	2	2	1	leucine-zipper	of	insertion	element	IS481
HTH_Tnp_1	PF01527.20	gi|408403542|ref|YP_006861525.1|	-	1.4e-07	31.7	0.2	2.4e-07	31.0	0.0	1.5	2	0	0	2	2	1	1	Transposase
HTH_33	PF13592.6	gi|408403542|ref|YP_006861525.1|	-	1.5e-06	27.7	0.2	9e-06	25.2	0.2	2.1	2	0	0	2	2	2	1	Winged	helix-turn	helix
HTH_Tnp_1_2	PF13022.6	gi|408403542|ref|YP_006861525.1|	-	1.2e-05	25.5	0.3	1.7e-05	25.0	0.1	1.5	2	1	0	2	2	1	1	Helix-turn-helix	of	insertion	element	transposase
HTH_21	PF13276.6	gi|408403542|ref|YP_006861525.1|	-	0.0056	16.8	1.1	0.021	14.9	0.5	2.2	1	1	1	2	2	2	1	HTH-like	domain
HTH_AraC	PF00165.23	gi|408403542|ref|YP_006861525.1|	-	0.0061	16.6	0.7	0.073	13.2	0.1	2.4	2	1	1	3	3	3	1	Bacterial	regulatory	helix-turn-helix	proteins,	AraC	family
HTH_7	PF02796.15	gi|408403542|ref|YP_006861525.1|	-	0.0068	16.5	3.6	0.26	11.4	0.1	2.6	3	0	0	3	3	3	1	Helix-turn-helix	domain	of	resolvase
Terminase_5	PF06056.12	gi|408403542|ref|YP_006861525.1|	-	0.011	15.6	0.1	0.03	14.2	0.1	1.7	2	0	0	2	2	2	0	Putative	ATPase	subunit	of	terminase	(gpP-like)
HTH_36	PF13730.6	gi|408403542|ref|YP_006861525.1|	-	0.013	15.4	1.4	0.23	11.5	0.2	2.2	2	0	0	2	2	2	0	Helix-turn-helix	domain
HTH_Tnp_Tc3_2	PF01498.18	gi|408403542|ref|YP_006861525.1|	-	0.016	15.4	0.1	0.042	14.1	0.1	1.8	1	0	0	1	1	1	0	Transposase
HTH_Tnp_IS630	PF01710.16	gi|408403542|ref|YP_006861525.1|	-	0.019	15.0	2.7	0.057	13.5	1.1	2.0	1	1	1	2	2	2	0	Transposase
DUF1492	PF07374.11	gi|408403542|ref|YP_006861525.1|	-	0.019	15.1	0.1	0.043	14.0	0.0	1.7	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1492)
HTH_11	PF08279.12	gi|408403542|ref|YP_006861525.1|	-	0.065	13.2	0.2	1.6	8.7	0.1	2.5	2	0	0	2	2	2	0	HTH	domain
Phage_AlpA	PF05930.12	gi|408403542|ref|YP_006861525.1|	-	0.089	12.6	0.1	1.6	8.6	0.0	2.4	2	0	0	2	2	2	0	Prophage	CP4-57	regulatory	protein	(AlpA)
HTH_Tnp_ISL3	PF13542.6	gi|408403542|ref|YP_006861525.1|	-	0.1	12.0	0.2	10	5.7	0.0	2.4	2	0	0	2	2	2	0	Helix-turn-helix	domain	of	transposase	family	ISL3
HTH_22	PF13309.6	gi|408403542|ref|YP_006861525.1|	-	0.11	12.6	0.3	6.9	6.8	0.0	2.4	2	0	0	2	2	2	0	HTH	domain
Toxin_trans	PF07952.12	gi|408403543|ref|YP_006861526.1|	-	0.044	12.9	0.0	0.048	12.7	0.0	1.0	1	0	0	1	1	1	0	Clostridium	neurotoxin,	Translocation	domain
rve_2	PF13333.6	gi|408403545|ref|YP_006861528.1|	-	0.11	12.7	0.0	0.16	12.2	0.0	1.3	1	0	0	1	1	1	0	Integrase	core	domain
DDE_5	PF13546.6	gi|408403547|ref|YP_006861530.1|	-	0.09	12.1	0.0	0.094	12.0	0.0	1.0	1	0	0	1	1	1	0	DDE	superfamily	endonuclease
DUF4315	PF14193.6	gi|408403548|ref|YP_006861531.1|	-	0.05	13.6	0.3	0.44	10.6	0.3	1.9	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4315)
Transposase_20	PF02371.16	gi|408403551|ref|YP_006861534.1|	-	7.9e-17	61.4	0.0	1.6e-16	60.4	0.0	1.5	2	0	0	2	2	2	1	Transposase	IS116/IS110/IS902	family
SOG2	PF10428.9	gi|408403551|ref|YP_006861534.1|	-	0.23	10.6	0.1	0.28	10.3	0.1	1.1	1	0	0	1	1	1	0	RAM	signalling	pathway	protein
Epimerase	PF01370.21	gi|408403553|ref|YP_006861536.1|	-	1.8e-44	152.0	0.0	2.5e-44	151.5	0.0	1.1	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
GDP_Man_Dehyd	PF16363.5	gi|408403553|ref|YP_006861536.1|	-	7.2e-31	107.8	0.1	3.4e-30	105.6	0.1	2.0	1	1	0	1	1	1	1	GDP-mannose	4,6	dehydratase
3Beta_HSD	PF01073.19	gi|408403553|ref|YP_006861536.1|	-	2.6e-20	72.6	0.1	8.5e-20	70.9	0.1	1.7	1	1	0	1	1	1	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
Polysacc_synt_2	PF02719.15	gi|408403553|ref|YP_006861536.1|	-	2.1e-07	30.4	0.2	8.1e-07	28.5	0.3	1.8	2	0	0	2	2	2	1	Polysaccharide	biosynthesis	protein
NAD_binding_10	PF13460.6	gi|408403553|ref|YP_006861536.1|	-	4.1e-07	30.1	0.0	6.5e-07	29.4	0.0	1.3	1	0	0	1	1	1	1	NAD(P)H-binding
adh_short	PF00106.25	gi|408403553|ref|YP_006861536.1|	-	1.6e-05	24.5	0.1	2.2e-05	24.0	0.1	1.2	1	0	0	1	1	1	1	short	chain	dehydrogenase
NAD_binding_4	PF07993.12	gi|408403553|ref|YP_006861536.1|	-	0.00022	20.5	0.0	0.017	14.3	0.0	2.1	1	1	0	1	1	1	1	Male	sterility	protein
NmrA	PF05368.13	gi|408403553|ref|YP_006861536.1|	-	0.026	14.1	0.4	0.041	13.4	0.4	1.3	1	0	0	1	1	1	0	NmrA-like	family
Pyr_redox	PF00070.27	gi|408403553|ref|YP_006861536.1|	-	0.042	14.4	0.1	0.15	12.6	0.0	1.9	2	0	0	2	2	2	0	Pyridine	nucleotide-disulphide	oxidoreductase
KR	PF08659.10	gi|408403553|ref|YP_006861536.1|	-	0.1	12.5	0.0	0.16	11.9	0.0	1.4	1	0	0	1	1	1	0	KR	domain
RmlD_sub_bind	PF04321.17	gi|408403553|ref|YP_006861536.1|	-	0.16	11.0	0.0	0.21	10.7	0.0	1.3	1	0	0	1	1	1	0	RmlD	substrate	binding	domain
DDE_Tnp_1	PF01609.21	gi|408403554|ref|YP_006861537.1|	-	0.0008	19.1	0.7	0.0012	18.5	0.7	1.3	1	0	0	1	1	1	1	Transposase	DDE	domain
DUF1987	PF09345.10	gi|408403554|ref|YP_006861537.1|	-	0.097	12.3	0.0	0.17	11.6	0.0	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1987)
Epimerase	PF01370.21	gi|408403557|ref|YP_006861540.1|	-	3.3e-59	200.3	0.0	4.1e-59	200.0	0.0	1.1	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
GDP_Man_Dehyd	PF16363.5	gi|408403557|ref|YP_006861540.1|	-	8.1e-59	199.7	0.0	9.2e-59	199.5	0.0	1.0	1	0	0	1	1	1	1	GDP-mannose	4,6	dehydratase
3Beta_HSD	PF01073.19	gi|408403557|ref|YP_006861540.1|	-	7.5e-30	103.9	0.1	1e-29	103.5	0.1	1.1	1	0	0	1	1	1	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
Polysacc_synt_2	PF02719.15	gi|408403557|ref|YP_006861540.1|	-	1.1e-29	103.5	0.4	8.5e-29	100.6	0.4	1.9	1	1	0	1	1	1	1	Polysaccharide	biosynthesis	protein
RmlD_sub_bind	PF04321.17	gi|408403557|ref|YP_006861540.1|	-	2.3e-22	79.4	0.0	3.9e-22	78.7	0.0	1.3	1	1	0	1	1	1	1	RmlD	substrate	binding	domain
NAD_binding_4	PF07993.12	gi|408403557|ref|YP_006861540.1|	-	5.8e-16	58.4	0.5	5.5e-10	38.9	0.1	2.5	1	1	1	2	2	2	2	Male	sterility	protein
NAD_binding_10	PF13460.6	gi|408403557|ref|YP_006861540.1|	-	2.6e-11	43.8	0.0	4.8e-11	42.9	0.0	1.4	1	0	0	1	1	1	1	NAD(P)H-binding
adh_short	PF00106.25	gi|408403557|ref|YP_006861540.1|	-	2.9e-09	36.6	1.0	8.3e-09	35.2	1.0	1.8	1	1	0	1	1	1	1	short	chain	dehydrogenase
KR	PF08659.10	gi|408403557|ref|YP_006861540.1|	-	1.9e-05	24.7	0.7	4.1e-05	23.6	0.7	1.6	1	1	0	1	1	1	1	KR	domain
NmrA	PF05368.13	gi|408403557|ref|YP_006861540.1|	-	3.1e-05	23.7	0.3	6.2e-05	22.7	0.3	1.5	1	0	0	1	1	1	1	NmrA-like	family
adh_short_C2	PF13561.6	gi|408403557|ref|YP_006861540.1|	-	3.2e-05	23.6	0.5	5.7e-05	22.8	0.5	1.4	1	0	0	1	1	1	1	Enoyl-(Acyl	carrier	protein)	reductase
Sacchrp_dh_NADP	PF03435.18	gi|408403557|ref|YP_006861540.1|	-	0.0002	21.6	0.2	0.00058	20.1	0.2	1.8	1	1	0	1	1	1	1	Saccharopine	dehydrogenase	NADP	binding	domain
TrkA_N	PF02254.18	gi|408403557|ref|YP_006861540.1|	-	0.0044	17.3	0.1	0.016	15.5	0.2	1.9	2	0	0	2	2	2	1	TrkA-N	domain
NAD_binding_2	PF03446.15	gi|408403557|ref|YP_006861540.1|	-	0.0071	16.5	0.1	0.013	15.7	0.1	1.4	1	0	0	1	1	1	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
Methyltransf_25	PF13649.6	gi|408403557|ref|YP_006861540.1|	-	0.093	13.4	0.0	11	6.8	0.0	2.4	2	0	0	2	2	2	0	Methyltransferase	domain
DDE_Tnp_1_5	PF13737.6	gi|408403559|ref|YP_006861542.1|	-	2.5e-06	27.8	0.0	2.9e-06	27.5	0.0	1.2	1	0	0	1	1	1	1	Transposase	DDE	domain
Acyl-ACP_TE	PF01643.17	gi|408403559|ref|YP_006861542.1|	-	0.057	12.7	0.0	0.062	12.6	0.0	1.0	1	0	0	1	1	1	0	Acyl-ACP	thioesterase
DDE_Tnp_1	PF01609.21	gi|408403560|ref|YP_006861543.1|	-	1.4e-19	70.6	0.2	1.9e-19	70.2	0.2	1.1	1	0	0	1	1	1	1	Transposase	DDE	domain
DDE_Tnp_1_3	PF13612.6	gi|408403560|ref|YP_006861543.1|	-	1.4e-05	25.1	0.4	2.7e-05	24.2	0.3	1.4	1	1	0	1	1	1	1	Transposase	DDE	domain
DDE_Tnp_1_2	PF13586.6	gi|408403560|ref|YP_006861543.1|	-	0.00079	19.8	0.3	0.0077	16.6	0.3	2.1	1	1	0	1	1	1	1	Transposase	DDE	domain
DDE_5	PF13546.6	gi|408403560|ref|YP_006861543.1|	-	0.18	11.1	0.0	0.23	10.8	0.0	1.2	1	0	0	1	1	1	0	DDE	superfamily	endonuclease
DDE_Tnp_IS66	PF03050.14	gi|408403561|ref|YP_006861544.1|	-	0.085	12.3	0.0	0.088	12.3	0.0	1.1	1	0	0	1	1	1	0	Transposase	IS66	family
bZIP_1	PF00170.21	gi|408403562|ref|YP_006861545.1|	-	0.024	14.7	0.4	0.024	14.7	0.4	2.0	2	0	0	2	2	2	0	bZIP	transcription	factor
Rootletin	PF15035.6	gi|408403562|ref|YP_006861545.1|	-	0.024	14.7	0.6	0.04	13.9	0.6	1.4	1	0	0	1	1	1	0	Ciliary	rootlet	component,	centrosome	cohesion
NUDE_C	PF04880.13	gi|408403562|ref|YP_006861545.1|	-	0.025	15.1	0.3	0.047	14.2	0.3	1.4	1	0	0	1	1	1	0	NUDE	protein,	C-terminal	conserved	region
HALZ	PF02183.18	gi|408403562|ref|YP_006861545.1|	-	0.033	14.4	3.9	0.08	13.2	3.9	1.7	1	0	0	1	1	1	0	Homeobox	associated	leucine	zipper
Fungal_TACC	PF12709.7	gi|408403562|ref|YP_006861545.1|	-	0.037	14.5	0.3	0.087	13.3	0.1	1.6	2	0	0	2	2	2	0	Fungal	Transforming	acidic	coiled-coil	(TACC)	proteins
DUF2381	PF09544.10	gi|408403562|ref|YP_006861545.1|	-	0.046	13.3	0.3	0.076	12.5	0.3	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2381)
ZapB	PF06005.12	gi|408403562|ref|YP_006861545.1|	-	0.054	13.9	0.9	0.2	12.1	1.3	1.7	2	0	0	2	2	2	0	Cell	division	protein	ZapB
RasGAP_C	PF03836.15	gi|408403562|ref|YP_006861545.1|	-	0.062	13.5	1.6	0.097	12.8	0.6	1.7	2	0	0	2	2	2	0	RasGAP	C-terminus
YabA	PF06156.13	gi|408403562|ref|YP_006861545.1|	-	0.075	13.7	0.3	0.13	13.0	0.3	1.4	1	0	0	1	1	1	0	Initiation	control	protein	YabA
Mei5_like	PF17021.5	gi|408403564|ref|YP_006861547.1|	-	0.029	14.4	0.1	0.053	13.6	0.1	1.5	1	0	0	1	1	1	0	Putative	double-strand	recombination	repair-like
MRG	PF05712.13	gi|408403564|ref|YP_006861547.1|	-	0.03	13.6	0.0	0.031	13.6	0.0	1.2	1	0	0	1	1	1	0	MRG
DUF4919	PF16266.5	gi|408403565|ref|YP_006861548.1|	-	0.07	13.1	0.0	0.076	13.0	0.0	1.0	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4919)
DUF5109	PF17134.4	gi|408403566|ref|YP_006861549.1|	-	0.0026	17.7	0.2	0.061	13.2	0.0	2.2	1	1	1	2	2	2	1	Domain	of	unknown	function	(DUF5109)
NADH-UOR_E	PF16514.5	gi|408403566|ref|YP_006861549.1|	-	0.048	14.0	0.4	0.38	11.1	0.1	2.1	2	0	0	2	2	2	0	putative	NADH-ubiquinone	oxidoreductase	chain	E
Tom37_C	PF11801.8	gi|408403566|ref|YP_006861549.1|	-	0.085	12.8	1.1	0.14	12.1	0.6	1.6	2	0	0	2	2	2	0	Tom37	C-terminal	domain
CRC_subunit	PF08624.10	gi|408403567|ref|YP_006861550.1|	-	0.0039	17.6	0.3	0.19	12.1	0.0	2.5	2	0	0	2	2	2	2	Chromatin	remodelling	complex	Rsc7/Swp82	subunit
WYL	PF13280.6	gi|408403568|ref|YP_006861551.1|	-	0.012	15.6	0.0	0.016	15.3	0.0	1.1	1	0	0	1	1	1	0	WYL	domain
DDE_3	PF13358.6	gi|408403570|ref|YP_006861553.1|	-	3.9e-17	62.4	0.0	4.6e-17	62.1	0.0	1.1	1	0	0	1	1	1	1	DDE	superfamily	endonuclease
HTH_32	PF13565.6	gi|408403571|ref|YP_006861554.1|	-	1.4e-16	60.8	2.4	5.2e-16	59.0	0.6	2.1	1	1	1	2	2	2	1	Homeodomain-like	domain
HTH_33	PF13592.6	gi|408403571|ref|YP_006861554.1|	-	1e-15	57.1	1.3	2.3e-15	56.0	1.3	1.6	1	0	0	1	1	1	1	Winged	helix-turn	helix
HTH_23	PF13384.6	gi|408403571|ref|YP_006861554.1|	-	6.4e-09	35.4	3.0	2e-07	30.6	0.1	3.0	3	0	0	3	3	3	1	Homeodomain-like	domain
HTH_28	PF13518.6	gi|408403571|ref|YP_006861554.1|	-	9.6e-08	32.0	0.9	3.7e-06	27.0	0.1	2.2	2	0	0	2	2	2	1	Helix-turn-helix	domain
LZ_Tnp_IS481	PF13011.6	gi|408403571|ref|YP_006861554.1|	-	2.1e-07	31.3	0.4	4.4e-07	30.3	0.2	1.7	1	1	1	2	2	2	1	leucine-zipper	of	insertion	element	IS481
HTH_29	PF13551.6	gi|408403571|ref|YP_006861554.1|	-	2.2e-06	27.6	0.1	1.1e-05	25.3	0.0	2.1	2	1	0	2	2	2	1	Winged	helix-turn	helix
HTH_Tnp_Tc3_2	PF01498.18	gi|408403571|ref|YP_006861554.1|	-	0.019	15.2	0.3	0.041	14.1	0.3	1.6	1	0	0	1	1	1	0	Transposase
OrfB_IS605	PF01385.19	gi|408403572|ref|YP_006861555.1|	-	8.2e-24	84.1	1.1	2.5e-23	82.5	0.0	2.1	2	0	0	2	2	2	1	Probable	transposase
OrfB_Zn_ribbon	PF07282.11	gi|408403572|ref|YP_006861555.1|	-	0.00015	21.6	1.1	0.00037	20.3	1.1	1.6	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
SAM_PNT	PF02198.16	gi|408403572|ref|YP_006861555.1|	-	0.084	12.9	0.2	0.17	11.9	0.2	1.4	1	0	0	1	1	1	0	Sterile	alpha	motif	(SAM)/Pointed	domain
HTH_23	PF13384.6	gi|408403573|ref|YP_006861556.1|	-	1.6e-05	24.6	0.4	0.00012	21.7	0.1	2.6	2	1	1	3	3	3	1	Homeodomain-like	domain
HTH_28	PF13518.6	gi|408403573|ref|YP_006861556.1|	-	4.3e-05	23.6	0.0	0.00061	19.9	0.0	2.9	3	0	0	3	3	3	1	Helix-turn-helix	domain
GCR1_C	PF12550.8	gi|408403573|ref|YP_006861556.1|	-	0.0034	17.7	1.1	0.11	12.9	0.1	3.2	3	0	0	3	3	3	1	Transcriptional	activator	of	glycolytic	enzymes
ATG16	PF08614.11	gi|408403573|ref|YP_006861556.1|	-	0.01	16.1	21.8	0.17	12.1	0.6	3.7	3	1	0	3	3	3	2	Autophagy	protein	16	(ATG16)
GerE	PF00196.19	gi|408403573|ref|YP_006861556.1|	-	0.022	14.3	0.0	0.11	12.1	0.0	2.2	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	luxR	family
HTH_29	PF13551.6	gi|408403573|ref|YP_006861556.1|	-	0.056	13.5	0.0	0.16	12.0	0.0	1.8	1	0	0	1	1	1	0	Winged	helix-turn	helix
HTH_40	PF14493.6	gi|408403573|ref|YP_006861556.1|	-	0.09	13.2	2.4	3.7	8.1	0.0	3.9	3	1	0	3	3	3	0	Helix-turn-helix	domain
LacI	PF00356.21	gi|408403573|ref|YP_006861556.1|	-	0.096	12.5	0.0	0.4	10.5	0.0	2.1	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	lacI	family
DUF2935	PF11155.8	gi|408403573|ref|YP_006861556.1|	-	0.16	12.3	5.6	5.1	7.4	1.0	3.8	3	2	0	3	3	3	0	Domain	of	unknown	function	(DUF2935)
HCMV_UL139	PF12507.8	gi|408403573|ref|YP_006861556.1|	-	0.31	11.4	3.7	0.15	12.4	0.4	2.1	2	0	0	2	2	2	0	Human	Cytomegalovirus	UL139	protein
5_3_exonuc	PF01367.20	gi|408403573|ref|YP_006861556.1|	-	0.34	11.6	0.0	0.34	11.6	0.0	4.7	5	1	0	5	5	5	0	5'-3'	exonuclease,	C-terminal	SAM	fold
EF1_GNE	PF00736.19	gi|408403573|ref|YP_006861556.1|	-	0.52	10.5	0.0	0.52	10.5	0.0	2.8	3	1	0	3	3	3	0	EF-1	guanine	nucleotide	exchange	domain
Erp_C	PF06780.11	gi|408403573|ref|YP_006861556.1|	-	0.64	10.0	9.7	0.12	12.4	3.0	3.2	3	0	0	3	3	3	0	Erp	protein	C-terminus
Med4	PF10018.9	gi|408403573|ref|YP_006861556.1|	-	2.8	7.6	12.7	0.024	14.3	2.0	2.7	2	1	1	3	3	3	0	Vitamin-D-receptor	interacting	Mediator	subunit	4
Snapin_Pallidin	PF14712.6	gi|408403573|ref|YP_006861556.1|	-	4.6	7.7	21.7	8.3	6.9	0.2	4.9	5	0	0	5	5	5	0	Snapin/Pallidin
FlaC_arch	PF05377.11	gi|408403573|ref|YP_006861556.1|	-	5	7.6	17.4	5.9	7.4	0.1	5.7	4	2	1	5	5	5	0	Flagella	accessory	protein	C	(FlaC)
TolA_bind_tri	PF16331.5	gi|408403573|ref|YP_006861556.1|	-	8.4	6.6	20.7	1.2	9.3	1.1	4.6	4	2	2	6	6	6	0	TolA	binding	protein	trimerisation
DUF5562	PF17717.1	gi|408403574|ref|YP_006861557.1|	-	0.024	14.6	0.0	0.028	14.4	0.0	1.1	1	0	0	1	1	1	0	Family	of	unknown	function	(DUF5562)
DDE_Tnp_1	PF01609.21	gi|408403574|ref|YP_006861557.1|	-	0.029	14.0	0.0	0.029	14.0	0.0	1.1	1	0	0	1	1	1	0	Transposase	DDE	domain
DDE_Tnp_IS66	PF03050.14	gi|408403578|ref|YP_006861561.1|	-	5.9e-05	22.7	0.0	6.8e-05	22.5	0.0	1.0	1	0	0	1	1	1	1	Transposase	IS66	family
zf-IS66	PF13005.7	gi|408403579|ref|YP_006861562.1|	-	0.00014	22.2	0.3	0.00034	20.9	0.3	1.7	1	0	0	1	1	1	1	zinc-finger	binding	domain	of	transposase	IS66
bZIP_1	PF00170.21	gi|408403579|ref|YP_006861562.1|	-	0.0021	18.1	0.6	0.0021	18.1	0.6	2.3	2	0	0	2	2	2	1	bZIP	transcription	factor
SOGA	PF11365.8	gi|408403579|ref|YP_006861562.1|	-	0.005	17.9	0.8	0.0077	17.3	0.8	1.4	1	0	0	1	1	1	1	Protein	SOGA
DUF4164	PF13747.6	gi|408403579|ref|YP_006861562.1|	-	0.0075	16.5	0.3	0.013	15.8	0.3	1.4	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4164)
RasGAP_C	PF03836.15	gi|408403579|ref|YP_006861562.1|	-	0.0089	16.2	2.4	0.014	15.5	2.4	1.3	1	0	0	1	1	1	1	RasGAP	C-terminus
YabA	PF06156.13	gi|408403579|ref|YP_006861562.1|	-	0.016	15.8	1.2	0.022	15.4	1.2	1.2	1	0	0	1	1	1	0	Initiation	control	protein	YabA
ZapB	PF06005.12	gi|408403579|ref|YP_006861562.1|	-	0.028	14.9	3.0	0.042	14.3	3.0	1.3	1	0	0	1	1	1	0	Cell	division	protein	ZapB
TSC22	PF01166.18	gi|408403579|ref|YP_006861562.1|	-	0.045	14.1	0.4	0.078	13.3	0.4	1.3	1	0	0	1	1	1	0	TSC-22/dip/bun	family
Rootletin	PF15035.6	gi|408403579|ref|YP_006861562.1|	-	0.086	12.9	3.7	0.12	12.4	3.5	1.3	1	1	0	1	1	1	0	Ciliary	rootlet	component,	centrosome	cohesion
DUF4200	PF13863.6	gi|408403579|ref|YP_006861562.1|	-	0.095	13.1	4.1	0.14	12.5	4.1	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4200)
FlaC_arch	PF05377.11	gi|408403579|ref|YP_006861562.1|	-	0.1	13.0	0.0	0.18	12.2	0.0	1.3	1	0	0	1	1	1	0	Flagella	accessory	protein	C	(FlaC)
DUF4407	PF14362.6	gi|408403579|ref|YP_006861562.1|	-	0.15	11.4	1.7	0.21	10.9	1.7	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4407)
DivIC	PF04977.15	gi|408403579|ref|YP_006861562.1|	-	0.18	11.6	2.1	0.31	10.9	2.1	1.4	1	0	0	1	1	1	0	Septum	formation	initiator
HALZ	PF02183.18	gi|408403579|ref|YP_006861562.1|	-	0.23	11.7	4.4	0.36	11.1	4.4	1.4	1	0	0	1	1	1	0	Homeobox	associated	leucine	zipper
MazE_antitoxin	PF04014.18	gi|408403580|ref|YP_006861563.1|	-	0.069	13.1	0.1	0.11	12.5	0.1	1.3	1	0	0	1	1	1	0	Antidote-toxin	recognition	MazE,	bacterial	antitoxin
PemK_toxin	PF02452.17	gi|408403581|ref|YP_006861564.1|	-	4.1e-18	65.8	0.1	4.5e-18	65.7	0.1	1.0	1	0	0	1	1	1	1	PemK-like,	MazF-like	toxin	of	type	II	toxin-antitoxin	system
FtsH_ext	PF06480.15	gi|408403581|ref|YP_006861564.1|	-	0.051	13.9	0.5	0.079	13.3	0.3	1.4	1	1	0	1	1	1	0	FtsH	Extracellular
DDE_Tnp_1	PF01609.21	gi|408403582|ref|YP_006861565.1|	-	1.2e-10	41.4	2.1	1.5e-10	41.1	2.1	1.1	1	0	0	1	1	1	1	Transposase	DDE	domain
DDE_Tnp_1_7	PF13843.6	gi|408403582|ref|YP_006861565.1|	-	0.00048	19.6	0.8	0.00055	19.3	0.8	1.1	1	0	0	1	1	1	1	Transposase	IS4
PDDEXK_5	PF11645.8	gi|408403582|ref|YP_006861565.1|	-	0.054	13.5	0.4	0.085	12.8	0.4	1.3	1	0	0	1	1	1	0	PD-(D/E)XK	endonuclease
HATPase_c	PF02518.26	gi|408403585|ref|YP_006861568.1|	-	3.6e-25	88.7	0.0	1.5e-24	86.7	0.0	2.2	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
dCache_1	PF02743.18	gi|408403585|ref|YP_006861568.1|	-	9.3e-18	64.9	4.4	9.3e-18	64.9	4.4	2.0	2	0	0	2	2	2	1	Cache	domain
HisKA	PF00512.25	gi|408403585|ref|YP_006861568.1|	-	7.8e-10	38.7	0.2	2.4e-09	37.1	0.2	1.9	1	0	0	1	1	1	1	His	Kinase	A	(phospho-acceptor)	domain
HATPase_c_5	PF14501.6	gi|408403585|ref|YP_006861568.1|	-	0.00013	21.8	0.9	0.00073	19.4	0.1	2.4	2	0	0	2	2	2	1	GHKL	domain
HATPase_c_3	PF13589.6	gi|408403585|ref|YP_006861568.1|	-	0.00029	20.7	0.0	0.0009	19.1	0.0	1.8	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HATPase_c_2	PF13581.6	gi|408403585|ref|YP_006861568.1|	-	0.011	15.7	0.0	0.023	14.7	0.0	1.4	1	0	0	1	1	1	0	Histidine	kinase-like	ATPase	domain
UPF0565	PF10561.9	gi|408403586|ref|YP_006861569.1|	-	0.0081	15.4	0.0	0.0088	15.3	0.0	1.1	1	0	0	1	1	1	1	Uncharacterised	protein	family	UPF0565
Nucleic_acid_bd	PF13820.6	gi|408403586|ref|YP_006861569.1|	-	0.011	15.6	0.0	0.013	15.4	0.0	1.1	1	0	0	1	1	1	0	Putative	nucleic	acid-binding	region
OrfB_Zn_ribbon	PF07282.11	gi|408403587|ref|YP_006861570.1|	-	6.2e-17	61.3	0.2	7.3e-17	61.1	0.2	1.1	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
zinc_ribbon_2	PF13240.6	gi|408403587|ref|YP_006861570.1|	-	0.0004	20.0	1.0	0.74	9.6	0.2	2.2	2	0	0	2	2	2	2	zinc-ribbon	domain
zf-ribbon_3	PF13248.6	gi|408403587|ref|YP_006861570.1|	-	0.00045	19.5	1.7	0.13	11.7	0.3	2.2	2	0	0	2	2	2	2	zinc-ribbon	domain
DZR	PF12773.7	gi|408403587|ref|YP_006861570.1|	-	0.00053	20.0	0.3	0.00068	19.6	0.3	1.2	1	0	0	1	1	1	1	Double	zinc	ribbon
TF_Zn_Ribbon	PF08271.12	gi|408403587|ref|YP_006861570.1|	-	0.0018	17.7	0.1	0.096	12.2	0.0	2.1	2	0	0	2	2	2	1	TFIIB	zinc-binding
zf_UBZ	PF18439.1	gi|408403587|ref|YP_006861570.1|	-	0.0054	16.3	2.5	0.081	12.5	0.1	2.2	1	1	1	2	2	2	1	Ubiquitin-Binding	Zinc	Finger
Nudix_N_2	PF14803.6	gi|408403587|ref|YP_006861570.1|	-	0.0055	16.6	4.0	0.1	12.6	4.0	2.1	1	1	0	1	1	1	1	Nudix	N-terminal
zf-NADH-PPase	PF09297.11	gi|408403587|ref|YP_006861570.1|	-	0.0058	16.3	1.7	0.0094	15.6	1.7	1.3	1	0	0	1	1	1	1	NADH	pyrophosphatase	zinc	ribbon	domain
Rpr2	PF04032.16	gi|408403587|ref|YP_006861570.1|	-	0.006	16.8	0.6	1.2	9.5	0.1	2.0	1	1	1	2	2	2	1	RNAse	P	Rpr2/Rpp21/SNM1	subunit	domain
FYVE	PF01363.21	gi|408403587|ref|YP_006861570.1|	-	0.0089	16.2	0.1	0.0096	16.0	0.1	1.1	1	0	0	1	1	1	1	FYVE	zinc	finger
zinc_ribbon_4	PF13717.6	gi|408403587|ref|YP_006861570.1|	-	0.0094	15.9	0.5	0.63	10.0	0.0	2.2	2	0	0	2	2	2	1	zinc-ribbon	domain
C1_2	PF03107.16	gi|408403587|ref|YP_006861570.1|	-	0.011	16.0	0.1	0.013	15.8	0.1	1.2	1	0	0	1	1	1	0	C1	domain
Ribosomal_L37ae	PF01780.19	gi|408403587|ref|YP_006861570.1|	-	0.012	15.6	0.2	0.014	15.4	0.2	1.1	1	0	0	1	1	1	0	Ribosomal	L37ae	protein	family
HypA	PF01155.19	gi|408403587|ref|YP_006861570.1|	-	0.013	15.5	0.2	0.015	15.3	0.2	1.1	1	0	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
TFIIS_C	PF01096.18	gi|408403587|ref|YP_006861570.1|	-	0.04	13.8	1.5	4.8	7.1	0.1	2.1	2	0	0	2	2	2	0	Transcription	factor	S-II	(TFIIS)
DUF1451	PF07295.11	gi|408403587|ref|YP_006861570.1|	-	0.042	13.9	0.3	0.047	13.7	0.3	1.1	1	0	0	1	1	1	0	Zinc-ribbon	containing	domain
zn-ribbon_14	PF16503.5	gi|408403587|ref|YP_006861570.1|	-	0.044	13.3	1.4	7.1	6.2	0.1	2.3	2	0	0	2	2	2	0	Zinc-ribbon
Ribosomal_L37e	PF01907.19	gi|408403587|ref|YP_006861570.1|	-	0.05	13.8	0.4	0.075	13.2	0.4	1.3	1	0	0	1	1	1	0	Ribosomal	protein	L37e
zf-HYPF	PF07503.12	gi|408403587|ref|YP_006861570.1|	-	0.086	12.6	1.2	3.7	7.4	0.3	2.3	2	0	0	2	2	2	0	HypF	finger
Auto_anti-p27	PF06677.12	gi|408403587|ref|YP_006861570.1|	-	0.096	12.9	0.7	2.7	8.2	0.0	2.1	2	0	0	2	2	2	0	Sjogren's	syndrome/scleroderma	autoantigen	1	(Autoantigen	p27)
RecR	PF02132.15	gi|408403587|ref|YP_006861570.1|	-	0.11	12.1	2.6	1.5	8.4	0.1	2.1	2	0	0	2	2	2	0	RecR	protein
zf-dskA_traR	PF01258.17	gi|408403587|ref|YP_006861570.1|	-	0.16	11.9	2.7	0.87	9.6	2.2	2.0	1	1	0	1	1	1	0	Prokaryotic	dksA/traR	C4-type	zinc	finger
DUF2688	PF10892.8	gi|408403587|ref|YP_006861570.1|	-	0.31	10.6	2.5	1.4	8.5	0.3	2.1	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF2688)
zf-ACC	PF17848.1	gi|408403587|ref|YP_006861570.1|	-	0.56	10.3	4.2	6.6	6.9	0.5	2.2	1	1	1	2	2	2	0	Acetyl-coA	carboxylase	zinc	finger	domain
Zn-ribbon_8	PF09723.10	gi|408403588|ref|YP_006861571.1|	-	0.018	15.1	4.7	0.087	12.9	4.7	1.9	1	1	0	1	1	1	0	Zinc	ribbon	domain
DZR	PF12773.7	gi|408403588|ref|YP_006861571.1|	-	0.031	14.3	1.2	0.046	13.7	1.2	1.2	1	0	0	1	1	1	0	Double	zinc	ribbon
zf-NADH-PPase	PF09297.11	gi|408403588|ref|YP_006861571.1|	-	0.035	13.8	4.2	0.081	12.6	0.8	2.2	2	0	0	2	2	2	0	NADH	pyrophosphatase	zinc	ribbon	domain
zinc-ribbons_6	PF07191.12	gi|408403588|ref|YP_006861571.1|	-	0.042	13.8	0.0	0.05	13.6	0.0	1.2	1	0	0	1	1	1	0	zinc-ribbons
Prok-RING_1	PF14446.6	gi|408403588|ref|YP_006861571.1|	-	0.055	13.4	0.9	0.081	12.9	0.9	1.2	1	0	0	1	1	1	0	Prokaryotic	RING	finger	family	1
zf-C3HC4_3	PF13920.6	gi|408403588|ref|YP_006861571.1|	-	0.063	13.2	0.4	0.084	12.7	0.4	1.2	1	0	0	1	1	1	0	Zinc	finger,	C3HC4	type	(RING	finger)
zf_UBZ	PF18439.1	gi|408403588|ref|YP_006861571.1|	-	0.13	11.9	2.5	3.9	7.1	0.2	2.2	1	1	1	2	2	2	0	Ubiquitin-Binding	Zinc	Finger
HypA	PF01155.19	gi|408403588|ref|YP_006861571.1|	-	0.16	12.0	1.2	0.23	11.5	1.2	1.2	1	0	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
TF_Zn_Ribbon	PF08271.12	gi|408403588|ref|YP_006861571.1|	-	0.16	11.5	2.1	4.5	6.9	0.1	2.2	2	0	0	2	2	2	0	TFIIB	zinc-binding
Halogen_Hydrol	PF10112.9	gi|408403588|ref|YP_006861571.1|	-	0.34	10.9	1.4	0.43	10.6	1.4	1.1	1	0	0	1	1	1	0	5-bromo-4-chloroindolyl	phosphate	hydrolysis	protein
TFIIS_C	PF01096.18	gi|408403588|ref|YP_006861571.1|	-	1	9.3	8.3	1.5	8.7	0.2	3.1	3	0	0	3	3	3	0	Transcription	factor	S-II	(TFIIS)
Peptidase_C74	PF12387.8	gi|408403588|ref|YP_006861571.1|	-	1.2	8.6	5.0	0.51	9.8	1.9	1.7	2	0	0	2	2	2	0	Pestivirus	NS2	peptidase
Rubredoxin_2	PF18073.1	gi|408403588|ref|YP_006861571.1|	-	1.9	8.3	6.6	9.5	6.0	6.6	2.0	1	1	0	1	1	1	0	Rubredoxin	metal	binding	domain
DUF983	PF06170.12	gi|408403588|ref|YP_006861571.1|	-	9.2	6.8	8.7	28	5.2	0.7	3.0	2	1	1	3	3	3	0	Protein	of	unknown	function	(DUF983)
Urate_ox_N	PF06181.11	gi|408403589|ref|YP_006861572.1|	-	0.052	12.9	0.0	0.052	12.9	0.0	1.0	1	0	0	1	1	1	0	Urate	oxidase	N-terminal
Fib_alpha	PF08702.10	gi|408403591|ref|YP_006861574.1|	-	0.0045	17.2	7.5	0.0045	17.2	7.5	1.5	1	1	0	1	1	1	1	Fibrinogen	alpha/beta	chain	family
BLOC1_2	PF10046.9	gi|408403591|ref|YP_006861574.1|	-	0.026	14.8	3.2	0.076	13.3	3.2	1.9	1	1	0	1	1	1	0	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
ZapB	PF06005.12	gi|408403591|ref|YP_006861574.1|	-	0.034	14.6	3.4	0.034	14.6	3.4	2.7	1	1	1	2	2	2	0	Cell	division	protein	ZapB
ADIP	PF11559.8	gi|408403591|ref|YP_006861574.1|	-	0.44	10.6	20.7	0.065	13.3	15.9	1.9	1	1	1	2	2	2	0	Afadin-	and	alpha	-actinin-Binding
Acetyltransf_11	PF13720.6	gi|408403591|ref|YP_006861574.1|	-	1	9.9	4.3	1.1	9.8	2.8	1.8	1	1	1	2	2	2	0	Udp	N-acetylglucosamine	O-acyltransferase;	Domain	2
NPV_P10	PF05531.12	gi|408403591|ref|YP_006861574.1|	-	1.2	9.6	5.5	5.9	7.4	1.2	2.3	1	1	1	2	2	2	0	Nucleopolyhedrovirus	P10	protein
Tweety	PF04906.13	gi|408403591|ref|YP_006861574.1|	-	4.4	5.9	7.0	1.8	7.2	1.0	1.9	1	1	1	2	2	2	0	Tweety
Ferritin	PF00210.24	gi|408403593|ref|YP_006861576.1|	-	2.4e-23	82.7	0.0	2.9e-23	82.4	0.0	1.1	1	0	0	1	1	1	1	Ferritin-like	domain
COQ7	PF03232.13	gi|408403593|ref|YP_006861576.1|	-	0.012	15.4	0.0	0.03	14.1	0.0	1.6	2	0	0	2	2	2	0	Ubiquinone	biosynthesis	protein	COQ7
Ferritin_2	PF13668.6	gi|408403593|ref|YP_006861576.1|	-	0.052	13.7	0.0	0.096	12.9	0.0	1.4	1	0	0	1	1	1	0	Ferritin-like	domain
zf-NOSIP	PF15906.5	gi|408403595|ref|YP_006861578.1|	-	0.071	13.3	0.0	0.71	10.1	0.0	1.9	1	1	1	2	2	2	0	Zinc-finger	of	nitric	oxide	synthase-interacting	protein
PBP_like_2	PF12849.7	gi|408403596|ref|YP_006861579.1|	-	2.2e-59	201.5	0.3	3.1e-59	201.0	0.3	1.2	1	0	0	1	1	1	1	PBP	superfamily	domain
BPD_transp_1	PF00528.22	gi|408403596|ref|YP_006861579.1|	-	1.4e-16	60.8	20.8	1.4e-16	60.8	20.8	3.0	1	1	1	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
SBP_bac_1	PF01547.25	gi|408403596|ref|YP_006861579.1|	-	6.3e-16	59.2	0.0	1.5e-15	58.0	0.0	1.7	2	1	0	2	2	2	1	Bacterial	extracellular	solute-binding	protein
PBP_like	PF12727.7	gi|408403596|ref|YP_006861579.1|	-	2.5e-07	30.0	0.0	8.9e-07	28.2	0.0	1.9	1	1	0	1	1	1	1	PBP	superfamily	domain
GTP1_OBG	PF01018.22	gi|408403596|ref|YP_006861579.1|	-	0.05	13.2	0.0	0.085	12.4	0.0	1.3	1	0	0	1	1	1	0	GTP1/OBG
DUF859	PF05895.12	gi|408403596|ref|YP_006861579.1|	-	0.062	11.8	0.0	0.094	11.2	0.0	1.1	1	0	0	1	1	1	0	Siphovirus	protein	of	unknown	function	(DUF859)
BPD_transp_1	PF00528.22	gi|408403597|ref|YP_006861580.1|	-	1.5e-18	67.2	15.9	1.5e-18	67.2	15.9	2.0	2	0	0	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
Glucos_trans_II	PF14264.6	gi|408403597|ref|YP_006861580.1|	-	0.00067	19.1	1.3	0.012	15.0	0.1	2.3	1	1	1	2	2	2	1	Glucosyl	transferase	GtrII
DUF3333	PF11812.8	gi|408403597|ref|YP_006861580.1|	-	1.3	9.2	3.5	1.5	9.0	0.1	2.3	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF3333)
Lamprin	PF06403.11	gi|408403597|ref|YP_006861580.1|	-	1.6	8.7	11.7	0.26	11.3	7.7	1.7	2	0	0	2	2	2	0	Lamprin
ABC_tran	PF00005.27	gi|408403598|ref|YP_006861581.1|	-	7.5e-33	114.0	0.0	1.1e-32	113.4	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|408403598|ref|YP_006861581.1|	-	4e-10	40.0	0.0	0.00089	19.2	0.0	2.1	1	1	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|408403598|ref|YP_006861581.1|	-	1.4e-07	31.2	0.1	4.2e-06	26.4	0.1	2.1	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_22	PF13401.6	gi|408403598|ref|YP_006861581.1|	-	1.4e-05	25.4	0.0	4e-05	23.9	0.0	1.9	1	1	0	1	1	1	1	AAA	domain
AAA_23	PF13476.6	gi|408403598|ref|YP_006861581.1|	-	2.9e-05	24.7	0.2	5.8e-05	23.7	0.2	1.5	1	0	0	1	1	1	1	AAA	domain
AAA_16	PF13191.6	gi|408403598|ref|YP_006861581.1|	-	6e-05	23.5	0.0	0.00013	22.4	0.0	1.7	1	1	0	1	1	1	1	AAA	ATPase	domain
RsgA_GTPase	PF03193.16	gi|408403598|ref|YP_006861581.1|	-	0.00014	21.9	0.0	0.00025	21.0	0.0	1.4	1	0	0	1	1	1	1	RsgA	GTPase
Rad17	PF03215.15	gi|408403598|ref|YP_006861581.1|	-	0.00031	20.7	0.0	0.0005	20.0	0.0	1.3	1	0	0	1	1	1	1	Rad17	P-loop	domain
TniB	PF05621.11	gi|408403598|ref|YP_006861581.1|	-	0.00042	19.8	0.1	0.18	11.2	0.0	2.3	2	0	0	2	2	2	2	Bacterial	TniB	protein
AAA_29	PF13555.6	gi|408403598|ref|YP_006861581.1|	-	0.00076	19.2	0.0	0.0014	18.3	0.0	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_15	PF13175.6	gi|408403598|ref|YP_006861581.1|	-	0.00082	19.2	0.0	0.0016	18.2	0.0	1.3	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_30	PF13604.6	gi|408403598|ref|YP_006861581.1|	-	0.0052	16.5	0.2	0.03	14.0	0.0	1.9	2	0	0	2	2	2	1	AAA	domain
ABC_ATPase	PF09818.9	gi|408403598|ref|YP_006861581.1|	-	0.006	15.4	0.1	1.4	7.6	0.0	2.1	2	0	0	2	2	2	2	Predicted	ATPase	of	the	ABC	class
AAA_18	PF13238.6	gi|408403598|ref|YP_006861581.1|	-	0.0061	17.1	0.0	0.011	16.3	0.0	1.6	1	1	0	1	1	1	1	AAA	domain
AAA	PF00004.29	gi|408403598|ref|YP_006861581.1|	-	0.0071	16.8	0.0	0.17	12.3	0.0	2.3	2	0	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_28	PF13521.6	gi|408403598|ref|YP_006861581.1|	-	0.0083	16.4	0.0	0.019	15.2	0.0	1.7	1	0	0	1	1	1	1	AAA	domain
NB-ARC	PF00931.22	gi|408403598|ref|YP_006861581.1|	-	0.02	14.1	0.0	0.029	13.6	0.0	1.4	1	1	0	1	1	1	0	NB-ARC	domain
ATPase_2	PF01637.18	gi|408403598|ref|YP_006861581.1|	-	0.031	14.2	0.1	0.095	12.6	0.0	1.7	2	0	0	2	2	2	0	ATPase	domain	predominantly	from	Archaea
ATP-synt_ab	PF00006.25	gi|408403598|ref|YP_006861581.1|	-	0.032	13.9	0.1	0.13	11.9	0.1	1.8	1	1	0	1	1	1	0	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
AAA_11	PF13086.6	gi|408403598|ref|YP_006861581.1|	-	0.043	13.6	0.0	0.1	12.4	0.0	1.6	2	0	0	2	2	2	0	AAA	domain
Adeno_IVa2	PF02456.15	gi|408403598|ref|YP_006861581.1|	-	0.053	12.3	0.0	0.11	11.2	0.0	1.5	2	0	0	2	2	2	0	Adenovirus	IVa2	protein
AAA_24	PF13479.6	gi|408403598|ref|YP_006861581.1|	-	0.056	13.1	0.0	0.08	12.7	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
AAA_33	PF13671.6	gi|408403598|ref|YP_006861581.1|	-	0.057	13.6	0.0	0.18	12.0	0.0	2.0	1	1	0	1	1	1	0	AAA	domain
Viral_helicase1	PF01443.18	gi|408403598|ref|YP_006861581.1|	-	0.11	12.3	0.0	0.18	11.6	0.0	1.4	1	0	0	1	1	1	0	Viral	(Superfamily	1)	RNA	helicase
AAA_19	PF13245.6	gi|408403598|ref|YP_006861581.1|	-	0.12	12.7	0.3	0.36	11.2	0.0	1.8	2	0	0	2	2	2	0	AAA	domain
AAA_25	PF13481.6	gi|408403598|ref|YP_006861581.1|	-	0.12	11.9	0.0	0.25	10.9	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
PduV-EutP	PF10662.9	gi|408403598|ref|YP_006861581.1|	-	0.14	11.9	0.1	0.3	10.8	0.1	1.5	1	0	0	1	1	1	0	Ethanolamine	utilisation	-	propanediol	utilisation
OrfB_Zn_ribbon	PF07282.11	gi|408403599|ref|YP_006861582.1|	-	1.4e-22	79.4	0.8	2.7e-22	78.5	0.8	1.5	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
OrfB_IS605	PF01385.19	gi|408403599|ref|YP_006861582.1|	-	1.1e-08	35.3	1.9	2.2e-08	34.4	0.1	2.2	2	0	0	2	2	2	1	Probable	transposase
HypA	PF01155.19	gi|408403599|ref|YP_006861582.1|	-	0.063	13.3	2.4	0.14	12.2	2.4	1.7	1	1	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
Ephrin_rec_like	PF07699.13	gi|408403599|ref|YP_006861582.1|	-	0.11	12.3	1.3	0.2	11.4	1.3	1.4	1	0	0	1	1	1	0	Putative	ephrin-receptor	like
Zn_Tnp_IS1595	PF12760.7	gi|408403599|ref|YP_006861582.1|	-	0.24	11.4	5.0	0.47	10.5	5.0	1.5	1	0	0	1	1	1	0	Transposase	zinc-ribbon	domain
zf-BED	PF02892.15	gi|408403599|ref|YP_006861582.1|	-	0.51	10.4	5.0	8.9	6.4	0.4	2.6	1	1	1	2	2	2	0	BED	zinc	finger
Tnp_zf-ribbon_2	PF13842.6	gi|408403599|ref|YP_006861582.1|	-	2.3	9.1	6.8	1.1	10.1	4.2	1.8	2	0	0	2	2	2	0	DDE_Tnp_1-like	zinc-ribbon
PhoU	PF01895.19	gi|408403600|ref|YP_006861583.1|	-	3.5e-29	101.1	3.6	7.2e-18	64.8	0.6	2.1	2	0	0	2	2	2	2	PhoU	domain
DUF5454	PF17535.2	gi|408403600|ref|YP_006861583.1|	-	0.13	11.7	0.0	0.21	10.9	0.0	1.3	1	0	0	1	1	1	0	Family	of	unknown	function	(DUF5454)
zf-met	PF12874.7	gi|408403603|ref|YP_006861586.1|	-	0.0097	16.3	0.1	0.013	15.8	0.1	1.2	1	0	0	1	1	1	1	Zinc-finger	of	C2H2	type
zf-C2H2_4	PF13894.6	gi|408403603|ref|YP_006861586.1|	-	0.032	15.1	0.4	0.049	14.5	0.4	1.3	1	0	0	1	1	1	0	C2H2-type	zinc	finger
MEDS	PF14417.6	gi|408403606|ref|YP_006861589.1|	-	0.0028	17.5	0.0	0.0033	17.3	0.0	1.1	1	0	0	1	1	1	1	MEDS:	MEthanogen/methylotroph,	DcmR	Sensory	domain
DDE_Tnp_1	PF01609.21	gi|408403607|ref|YP_006861590.1|	-	0.0002	21.1	0.0	0.00041	20.0	0.0	1.6	1	1	0	1	1	1	1	Transposase	DDE	domain
DUF1815	PF08844.10	gi|408403607|ref|YP_006861590.1|	-	0.17	11.9	0.2	0.87	9.6	0.1	2.0	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF1815)
NitrOD2	PF18550.1	gi|408403608|ref|YP_006861591.1|	-	0.016	15.4	0.0	0.02	15.0	0.0	1.4	1	1	0	1	1	1	0	Nitrososphaera	output	domain	2
DUF4258	PF14076.6	gi|408403608|ref|YP_006861591.1|	-	0.06	13.7	0.1	0.083	13.3	0.1	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4258)
PuR_N	PF09182.10	gi|408403610|ref|YP_006861593.1|	-	0.15	12.0	0.8	0.51	10.3	0.7	1.9	1	1	1	2	2	2	0	Bacterial	purine	repressor,	N-terminal
HATPase_c	PF02518.26	gi|408403613|ref|YP_006861596.1|	-	8.7e-30	103.5	0.8	4e-28	98.1	0.1	3.2	3	0	0	3	3	3	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HisKA	PF00512.25	gi|408403613|ref|YP_006861596.1|	-	3.9e-13	49.2	1.0	1.2e-12	47.7	1.0	1.9	1	0	0	1	1	1	1	His	Kinase	A	(phospho-acceptor)	domain
HATPase_c_2	PF13581.6	gi|408403613|ref|YP_006861596.1|	-	8.3e-06	25.8	0.0	0.0001	22.2	0.0	2.7	2	0	0	2	2	2	1	Histidine	kinase-like	ATPase	domain
HATPase_c_5	PF14501.6	gi|408403613|ref|YP_006861596.1|	-	2e-05	24.4	0.3	0.00051	19.9	0.0	3.1	2	0	0	2	2	2	1	GHKL	domain
HATPase_c_3	PF13589.6	gi|408403613|ref|YP_006861596.1|	-	0.0028	17.5	0.0	0.0095	15.8	0.0	1.9	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
Condensin2nSMC	PF12422.8	gi|408403613|ref|YP_006861596.1|	-	0.018	15.2	0.1	0.065	13.4	0.1	2.0	1	0	0	1	1	1	0	Condensin	II	non	structural	maintenance	of	chromosomes	subunit
SabA_adhesion	PF18304.1	gi|408403613|ref|YP_006861596.1|	-	0.03	13.6	0.4	0.1	11.8	0.1	2.0	2	0	0	2	2	2	0	SabA	N-terminal	extracellular	adhesion	domain
BAT	PF15915.5	gi|408403613|ref|YP_006861596.1|	-	0.11	12.4	0.1	0.22	11.4	0.1	1.4	1	0	0	1	1	1	0	GAF	and	HTH_10	associated	domain
Ribosomal_L22	PF00237.19	gi|408403613|ref|YP_006861596.1|	-	0.32	11.3	1.4	14	5.9	0.0	3.1	3	0	0	3	3	3	0	Ribosomal	protein	L22p/L17e
SSPI	PF14098.6	gi|408403614|ref|YP_006861597.1|	-	0.17	12.0	0.0	0.36	11.0	0.0	1.4	1	0	0	1	1	1	0	Small,	acid-soluble	spore	protein	I
zf-C2H2_4	PF13894.6	gi|408403616|ref|YP_006861599.1|	-	0.0021	18.8	0.2	0.003	18.2	0.2	1.3	1	0	0	1	1	1	1	C2H2-type	zinc	finger
zf-HYPF	PF07503.12	gi|408403616|ref|YP_006861599.1|	-	0.0034	17.1	0.5	0.0042	16.8	0.5	1.2	1	0	0	1	1	1	1	HypF	finger
zf-C2H2	PF00096.26	gi|408403616|ref|YP_006861599.1|	-	0.013	16.0	0.3	0.017	15.5	0.3	1.2	1	0	0	1	1	1	0	Zinc	finger,	C2H2	type
zf-Di19	PF05605.12	gi|408403616|ref|YP_006861599.1|	-	0.017	15.4	0.5	0.02	15.2	0.5	1.2	1	0	0	1	1	1	0	Drought	induced	19	protein	(Di19),	zinc-binding
zf-C2H2_6	PF13912.6	gi|408403616|ref|YP_006861599.1|	-	0.023	14.7	0.2	0.047	13.7	0.2	1.5	1	0	0	1	1	1	0	C2H2-type	zinc	finger
Fib_alpha	PF08702.10	gi|408403618|ref|YP_006861601.1|	-	0.0039	17.4	7.6	0.0039	17.4	7.6	1.6	1	1	0	1	1	1	1	Fibrinogen	alpha/beta	chain	family
ZapB	PF06005.12	gi|408403618|ref|YP_006861601.1|	-	0.036	14.5	3.4	0.036	14.5	3.4	2.6	1	1	0	2	2	2	0	Cell	division	protein	ZapB
Phage_Gp23	PF10669.9	gi|408403618|ref|YP_006861601.1|	-	0.1	12.9	6.6	0.12	12.7	5.1	2.0	1	1	0	1	1	1	0	Protein	gp23	(Bacteriophage	A118)
ADIP	PF11559.8	gi|408403618|ref|YP_006861601.1|	-	0.1	12.7	19.6	0.051	13.6	16.1	1.9	1	1	1	2	2	2	0	Afadin-	and	alpha	-actinin-Binding
Acetyltransf_11	PF13720.6	gi|408403618|ref|YP_006861601.1|	-	0.66	10.5	3.4	1.2	9.7	2.8	1.7	1	1	0	1	1	1	0	Udp	N-acetylglucosamine	O-acyltransferase;	Domain	2
NPV_P10	PF05531.12	gi|408403618|ref|YP_006861601.1|	-	1.1	9.8	5.4	6	7.4	1.0	2.3	1	1	1	2	2	2	0	Nucleopolyhedrovirus	P10	protein
BLOC1_2	PF10046.9	gi|408403618|ref|YP_006861601.1|	-	1.3	9.3	9.6	0.15	12.4	4.3	2.2	2	1	0	2	2	2	0	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
WES_acyltransf	PF03007.16	gi|408403618|ref|YP_006861601.1|	-	1.7	8.3	6.9	1.9	8.1	2.0	1.9	1	1	1	2	2	2	0	Wax	ester	synthase-like	Acyl-CoA	acyltransferase	domain
NSP2_assoc	PF14758.6	gi|408403618|ref|YP_006861601.1|	-	2.3	8.5	8.6	0.88	9.9	4.3	2.1	1	1	1	2	2	2	0	Non-essential	region	of	nsp2	of	arterivirus	polyprotein
End3	PF12761.7	gi|408403618|ref|YP_006861601.1|	-	4.3	7.5	13.8	1.8	8.7	10.7	1.9	1	1	1	2	2	2	0	Actin	cytoskeleton-regulatory	complex	protein	END3
Tweety	PF04906.13	gi|408403618|ref|YP_006861601.1|	-	5.7	5.5	7.1	1.8	7.1	0.9	1.9	1	1	1	2	2	2	0	Tweety
Thiamine_BP	PF01910.17	gi|408403619|ref|YP_006861602.1|	-	7.5e-07	29.0	0.2	9.1e-07	28.7	0.2	1.1	1	0	0	1	1	1	1	Thiamine-binding	protein
Response_reg	PF00072.24	gi|408403620|ref|YP_006861603.1|	-	0.00012	22.2	0.0	0.00019	21.6	0.0	1.3	1	0	0	1	1	1	1	Response	regulator	receiver	domain
Tektin	PF03148.14	gi|408403620|ref|YP_006861603.1|	-	0.017	13.9	0.4	0.019	13.7	0.4	1.1	1	0	0	1	1	1	0	Tektin	family
FliT	PF05400.13	gi|408403620|ref|YP_006861603.1|	-	0.033	15.0	0.8	0.06	14.2	0.8	1.4	1	1	0	1	1	1	0	Flagellar	protein	FliT
PKcGMP_CC	PF16808.5	gi|408403622|ref|YP_006861605.1|	-	0.00049	19.9	4.9	0.00049	19.9	4.9	2.5	3	0	0	3	3	3	1	Coiled-coil	N-terminus	of	cGMP-dependent	protein	kinase
TFA2_Winged_2	PF18121.1	gi|408403622|ref|YP_006861605.1|	-	0.91	9.3	4.6	0.44	10.3	0.9	2.4	3	0	0	3	3	3	0	TFA2	Winged	helix	domain	2
TrmB	PF01978.19	gi|408403623|ref|YP_006861606.1|	-	3.9e-14	52.3	0.0	1.4e-13	50.5	0.0	2.0	2	0	0	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_5	PF01022.20	gi|408403623|ref|YP_006861606.1|	-	4.4e-05	23.3	0.0	0.00011	22.0	0.0	1.7	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_24	PF13412.6	gi|408403623|ref|YP_006861606.1|	-	0.00011	21.7	0.0	0.00059	19.3	0.0	2.1	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
HTH_IclR	PF09339.10	gi|408403623|ref|YP_006861606.1|	-	0.00047	19.9	0.0	0.001	18.8	0.0	1.5	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
HTH_9	PF08221.11	gi|408403623|ref|YP_006861606.1|	-	0.00088	19.3	0.1	0.11	12.5	0.0	3.0	3	0	0	3	3	3	1	RNA	polymerase	III	subunit	RPC82	helix-turn-helix	domain
Sulfolobus_pRN	PF05584.11	gi|408403623|ref|YP_006861606.1|	-	0.0062	16.6	0.0	0.022	14.8	0.0	1.9	2	0	0	2	2	2	1	Sulfolobus	plasmid	regulatory	protein
TFIIE_alpha	PF02002.17	gi|408403623|ref|YP_006861606.1|	-	0.0065	16.3	0.3	0.032	14.1	0.1	2.3	1	1	0	1	1	1	1	TFIIE	alpha	subunit
FaeA	PF04703.12	gi|408403623|ref|YP_006861606.1|	-	0.021	15.2	0.0	0.048	14.0	0.0	1.6	1	0	0	1	1	1	0	FaeA-like	protein
PLDc_2	PF13091.6	gi|408403623|ref|YP_006861606.1|	-	0.065	13.1	0.3	0.29	11.0	0.1	2.2	2	1	1	3	3	3	0	PLD-like	domain
HTH_49	PF18010.1	gi|408403623|ref|YP_006861606.1|	-	0.11	12.4	0.1	0.45	10.4	0.0	2.1	2	0	0	2	2	1	0	Cry35Ab1	HTH	C-terminal	domain
MarR_2	PF12802.7	gi|408403623|ref|YP_006861606.1|	-	0.16	11.9	0.0	0.31	11.0	0.0	1.5	1	0	0	1	1	1	0	MarR	family
Arch_flagellin	PF01917.16	gi|408403624|ref|YP_006861607.1|	-	6.1e-25	88.3	7.1	8.2e-25	87.9	7.1	1.2	1	0	0	1	1	1	1	Archaebacterial	flagellin
EIID-AGA	PF03613.14	gi|408403624|ref|YP_006861607.1|	-	0.063	12.5	1.0	0.1	11.8	1.0	1.2	1	0	0	1	1	1	0	PTS	system	mannose/fructose/sorbose	family	IID	component
Tup_N	PF08581.10	gi|408403625|ref|YP_006861608.1|	-	0.0092	16.3	1.8	0.064	13.6	0.4	2.5	2	0	0	2	2	2	1	Tup	N-terminal
ZapB	PF06005.12	gi|408403625|ref|YP_006861608.1|	-	0.027	14.9	0.1	0.1	13.1	0.1	1.9	1	0	0	1	1	1	0	Cell	division	protein	ZapB
NAM-associated	PF14303.6	gi|408403625|ref|YP_006861608.1|	-	0.031	15.0	1.1	0.031	15.0	1.1	2.5	2	1	0	2	2	2	0	No	apical	meristem-associated	C-terminal	domain
ATG16	PF08614.11	gi|408403625|ref|YP_006861608.1|	-	0.039	14.2	0.8	0.039	14.2	0.8	2.1	2	0	0	2	2	2	0	Autophagy	protein	16	(ATG16)
SKA2	PF16740.5	gi|408403625|ref|YP_006861608.1|	-	0.055	13.3	0.3	0.13	12.0	0.3	1.6	1	0	0	1	1	1	0	Spindle	and	kinetochore-associated	protein	2
FlaC_arch	PF05377.11	gi|408403625|ref|YP_006861608.1|	-	0.066	13.6	2.6	0.18	12.2	2.6	1.8	1	0	0	1	1	1	0	Flagella	accessory	protein	C	(FlaC)
YabA	PF06156.13	gi|408403625|ref|YP_006861608.1|	-	0.87	10.3	3.7	0.45	11.2	0.4	2.1	2	1	1	3	3	3	0	Initiation	control	protein	YabA
Tmemb_cc2	PF10267.9	gi|408403625|ref|YP_006861608.1|	-	1.2	8.2	13.0	0.024	13.8	2.0	2.2	2	0	0	2	2	2	0	Predicted	transmembrane	and	coiled-coil	2	protein
Arch_flagellin	PF01917.16	gi|408403626|ref|YP_006861609.1|	-	2.4e-13	50.6	4.6	2.9e-13	50.3	4.6	1.1	1	0	0	1	1	1	1	Archaebacterial	flagellin
PglD_N	PF17836.1	gi|408403627|ref|YP_006861610.1|	-	0.1	13.2	0.0	0.26	11.9	0.0	1.7	1	0	0	1	1	1	0	PglD	N-terminal	domain
Arch_flagellin	PF01917.16	gi|408403627|ref|YP_006861610.1|	-	0.58	10.3	5.8	1	9.5	5.8	1.6	1	1	0	1	1	1	0	Archaebacterial	flagellin
ATPase	PF06745.13	gi|408403628|ref|YP_006861611.1|	-	5e-25	88.2	0.3	5.7e-25	88.0	0.3	1.0	1	0	0	1	1	1	1	KaiC
PAXNEB	PF05625.11	gi|408403628|ref|YP_006861611.1|	-	5.2e-08	32.4	0.4	4.8e-06	26.0	0.1	2.1	2	0	0	2	2	2	1	PAXNEB	protein
Rad51	PF08423.11	gi|408403628|ref|YP_006861611.1|	-	9.7e-08	31.6	0.0	1.4e-07	31.1	0.0	1.3	1	0	0	1	1	1	1	Rad51
AAA_24	PF13479.6	gi|408403628|ref|YP_006861611.1|	-	1.4e-06	28.2	0.1	2.4e-06	27.4	0.1	1.3	1	0	0	1	1	1	1	AAA	domain
AAA_25	PF13481.6	gi|408403628|ref|YP_006861611.1|	-	5.9e-06	26.0	0.0	1e-05	25.2	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
DUF835	PF05763.12	gi|408403628|ref|YP_006861611.1|	-	8.7e-06	25.5	0.2	2.1e-05	24.3	0.2	1.6	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF835)
RecA	PF00154.21	gi|408403628|ref|YP_006861611.1|	-	2.5e-05	23.9	0.3	0.013	15.0	0.0	2.2	2	0	0	2	2	2	2	recA	bacterial	DNA	recombination	protein
AAA_22	PF13401.6	gi|408403628|ref|YP_006861611.1|	-	0.00023	21.4	0.0	0.00047	20.5	0.0	1.4	1	1	0	1	1	1	1	AAA	domain
AAA_16	PF13191.6	gi|408403628|ref|YP_006861611.1|	-	0.0014	19.0	0.0	0.0028	18.1	0.0	1.6	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_7	PF12775.7	gi|408403628|ref|YP_006861611.1|	-	0.0025	17.4	1.1	0.0045	16.5	0.1	1.8	2	0	0	2	2	2	1	P-loop	containing	dynein	motor	region
NACHT	PF05729.12	gi|408403628|ref|YP_006861611.1|	-	0.006	16.5	0.0	0.023	14.6	0.0	2.1	2	1	0	2	2	2	1	NACHT	domain
AAA_14	PF13173.6	gi|408403628|ref|YP_006861611.1|	-	0.0095	16.0	0.6	0.019	15.0	0.1	1.8	2	1	0	2	2	2	1	AAA	domain
ResIII	PF04851.15	gi|408403628|ref|YP_006861611.1|	-	0.015	15.3	0.1	0.029	14.4	0.1	1.4	1	1	0	1	1	1	0	Type	III	restriction	enzyme,	res	subunit
RNA_helicase	PF00910.22	gi|408403628|ref|YP_006861611.1|	-	0.017	15.5	0.1	0.054	13.9	0.0	1.8	2	0	0	2	2	2	0	RNA	helicase
Sigma54_activat	PF00158.26	gi|408403628|ref|YP_006861611.1|	-	0.023	14.4	0.0	0.037	13.8	0.0	1.4	1	0	0	1	1	1	0	Sigma-54	interaction	domain
ArsA_ATPase	PF02374.15	gi|408403628|ref|YP_006861611.1|	-	0.026	13.7	1.1	1.2	8.2	0.0	2.1	1	1	1	2	2	2	0	Anion-transporting	ATPase
Helicase_RecD	PF05127.14	gi|408403628|ref|YP_006861611.1|	-	0.032	14.1	0.0	0.046	13.6	0.0	1.4	1	0	0	1	1	1	0	Helicase
Elong_Iki1	PF10483.9	gi|408403628|ref|YP_006861611.1|	-	0.036	13.6	0.1	0.044	13.3	0.1	1.1	1	0	0	1	1	1	0	Elongator	subunit	Iki1
Roc	PF08477.13	gi|408403628|ref|YP_006861611.1|	-	0.053	13.7	0.0	0.12	12.6	0.0	1.6	1	0	0	1	1	1	0	Ras	of	Complex,	Roc,	domain	of	DAPkinase
IstB_IS21	PF01695.17	gi|408403628|ref|YP_006861611.1|	-	0.075	12.8	0.0	0.19	11.4	0.0	1.6	2	0	0	2	2	2	0	IstB-like	ATP	binding	protein
AAA	PF00004.29	gi|408403628|ref|YP_006861611.1|	-	0.093	13.2	0.2	0.18	12.2	0.2	1.7	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
Ribosomal_S2	PF00318.20	gi|408403628|ref|YP_006861611.1|	-	0.097	11.9	0.0	0.16	11.2	0.0	1.3	1	0	0	1	1	1	0	Ribosomal	protein	S2
DUF2075	PF09848.9	gi|408403628|ref|YP_006861611.1|	-	0.18	11.0	0.0	0.28	10.4	0.0	1.3	1	0	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2075)
T2SSF	PF00482.23	gi|408403629|ref|YP_006861612.1|	-	4.9e-06	26.5	5.7	0.0001	22.2	0.3	3.2	3	0	0	3	3	3	2	Type	II	secretion	system	(T2SS),	protein	F
Peptidase_M50	PF02163.22	gi|408403629|ref|YP_006861612.1|	-	2.8	7.1	7.8	0.26	10.5	2.9	1.8	2	1	0	2	2	2	0	Peptidase	family	M50
T2SSE	PF00437.20	gi|408403630|ref|YP_006861613.1|	-	2.4e-42	144.9	0.0	3.2e-42	144.5	0.0	1.1	1	0	0	1	1	1	1	Type	II/IV	secretion	system	protein
Kinesin	PF00225.23	gi|408403630|ref|YP_006861613.1|	-	0.078	11.9	0.1	0.12	11.2	0.1	1.2	1	0	0	1	1	1	0	Kinesin	motor	domain
CheR	PF01739.18	gi|408403631|ref|YP_006861614.1|	-	4.4e-54	183.0	0.0	5.8e-54	182.5	0.0	1.2	1	0	0	1	1	1	1	CheR	methyltransferase,	SAM	binding	domain
CheR_N	PF03705.15	gi|408403631|ref|YP_006861614.1|	-	8.2e-09	35.1	1.0	1.7e-08	34.0	1.0	1.6	1	0	0	1	1	1	1	CheR	methyltransferase,	all-alpha	domain
Methyltransf_25	PF13649.6	gi|408403631|ref|YP_006861614.1|	-	1.3e-07	32.2	0.0	2.5e-05	24.9	0.0	2.4	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_11	PF08241.12	gi|408403631|ref|YP_006861614.1|	-	3.3e-06	27.6	0.0	2.4e-05	24.9	0.0	2.1	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.12	gi|408403631|ref|YP_006861614.1|	-	2.3e-05	25.0	0.0	7.4e-05	23.4	0.0	1.8	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_2	PF00891.18	gi|408403631|ref|YP_006861614.1|	-	0.00026	20.4	0.0	0.00056	19.3	0.0	1.5	2	0	0	2	2	2	1	O-methyltransferase	domain
Methyltransf_31	PF13847.6	gi|408403631|ref|YP_006861614.1|	-	0.00045	20.0	0.0	0.6	9.9	0.0	2.2	2	0	0	2	2	2	2	Methyltransferase	domain
Methyltransf_23	PF13489.6	gi|408403631|ref|YP_006861614.1|	-	0.00063	19.6	0.0	0.001	18.9	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
CheD	PF03975.13	gi|408403632|ref|YP_006861615.1|	-	2e-28	98.6	0.0	2.7e-28	98.3	0.0	1.2	1	0	0	1	1	1	1	CheD	chemotactic	sensory	transduction
Flu_B_NS1	PF02942.14	gi|408403632|ref|YP_006861615.1|	-	0.17	11.0	0.0	0.18	10.8	0.0	1.2	1	0	0	1	1	1	0	Influenza	B	non-structural	protein	(NS1)
CheC	PF04509.12	gi|408403633|ref|YP_006861616.1|	-	0.00033	20.5	1.1	0.00048	20.0	0.0	1.9	2	0	0	2	2	2	1	CheC-like	family
MtrA	PF04208.14	gi|408403633|ref|YP_006861616.1|	-	0.035	13.8	0.1	0.051	13.2	0.1	1.2	1	0	0	1	1	1	0	Tetrahydromethanopterin	S-methyltransferase,	subunit	A
CheW	PF01584.19	gi|408403634|ref|YP_006861617.1|	-	6.4e-20	71.2	0.6	1.2e-19	70.3	0.6	1.5	1	0	0	1	1	1	1	CheW-like	domain
Hpt	PF01627.23	gi|408403634|ref|YP_006861617.1|	-	9.5e-18	64.2	2.3	1.3e-17	63.8	0.2	2.1	2	0	0	2	2	2	1	Hpt	domain
HATPase_c	PF02518.26	gi|408403634|ref|YP_006861617.1|	-	2.2e-16	60.3	0.4	2.2e-16	60.3	0.4	3.3	4	1	0	4	4	4	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
H-kinase_dim	PF02895.14	gi|408403634|ref|YP_006861617.1|	-	1.3e-11	44.7	3.0	5.3e-11	42.8	3.0	2.2	1	0	0	1	1	1	1	Signal	transducing	histidine	kinase,	homodimeric	domain
HATPase_c_3	PF13589.6	gi|408403634|ref|YP_006861617.1|	-	0.065	13.1	0.3	0.18	11.6	0.3	1.8	1	1	0	1	1	1	0	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HATPase_c_2	PF13581.6	gi|408403634|ref|YP_006861617.1|	-	0.13	12.2	0.1	0.32	11.0	0.1	1.7	1	0	0	1	1	1	0	Histidine	kinase-like	ATPase	domain
DUF1515	PF07439.11	gi|408403634|ref|YP_006861617.1|	-	1.3	9.1	4.3	10	6.2	0.3	3.1	2	1	1	3	3	3	0	Protein	of	unknown	function	(DUF1515)
CheB_methylest	PF01339.17	gi|408403635|ref|YP_006861618.1|	-	1.3e-57	194.2	0.1	2.2e-57	193.5	0.1	1.4	1	0	0	1	1	1	1	CheB	methylesterase
Response_reg	PF00072.24	gi|408403635|ref|YP_006861618.1|	-	3.3e-19	69.1	0.1	7.7e-19	67.9	0.1	1.6	1	0	0	1	1	1	1	Response	regulator	receiver	domain
Response_reg	PF00072.24	gi|408403636|ref|YP_006861619.1|	-	2.5e-30	104.9	0.9	2.7e-30	104.8	0.9	1.0	1	0	0	1	1	1	1	Response	regulator	receiver	domain
CheW	PF01584.19	gi|408403637|ref|YP_006861620.1|	-	3.8e-34	117.3	0.4	4.7e-34	117.0	0.4	1.1	1	0	0	1	1	1	1	CheW-like	domain
MCPsignal	PF00015.21	gi|408403638|ref|YP_006861621.1|	-	1.3e-43	148.8	45.1	1.2e-38	132.7	20.4	3.8	1	1	1	3	3	3	3	Methyl-accepting	chemotaxis	protein	(MCP)	signalling	domain
DUF948	PF06103.11	gi|408403638|ref|YP_006861621.1|	-	0.0037	17.5	22.2	0.063	13.5	5.8	5.0	2	2	1	3	3	3	2	Bacterial	protein	of	unknown	function	(DUF948)
TACC_C	PF05010.14	gi|408403638|ref|YP_006861621.1|	-	0.0044	16.8	18.0	0.044	13.6	1.7	3.8	3	2	1	4	4	4	2	Transforming	acidic	coiled-coil-containing	protein	(TACC),	C-terminal
DUF2935	PF11155.8	gi|408403638|ref|YP_006861621.1|	-	0.011	16.0	0.9	3.1	8.2	0.0	3.9	2	2	0	2	2	2	0	Domain	of	unknown	function	(DUF2935)
Syntaxin-6_N	PF09177.11	gi|408403638|ref|YP_006861621.1|	-	0.067	13.7	10.2	1	10.0	0.2	3.8	2	1	1	3	3	3	0	Syntaxin	6,	N-terminal
COG6	PF06419.11	gi|408403638|ref|YP_006861621.1|	-	0.093	10.9	13.9	0.23	9.6	3.5	2.4	2	1	0	2	2	2	0	Conserved	oligomeric	complex	COG6
DUF4515	PF14988.6	gi|408403638|ref|YP_006861621.1|	-	0.13	12.1	7.8	0.04	13.8	1.7	2.5	2	1	0	2	2	2	0	Domain	of	unknown	function	(DUF4515)
Serine_rich	PF08824.10	gi|408403638|ref|YP_006861621.1|	-	0.14	12.1	12.3	1.3	9.0	1.3	3.1	1	1	1	3	3	3	0	Serine	rich	protein	interaction	domain
APG6_N	PF17675.1	gi|408403638|ref|YP_006861621.1|	-	0.14	12.6	16.3	1	9.9	7.3	3.4	2	2	0	2	2	2	0	Apg6	coiled-coil	region
KxDL	PF10241.9	gi|408403638|ref|YP_006861621.1|	-	0.2	11.9	10.1	0.45	10.8	0.7	3.9	3	1	1	4	4	4	0	Uncharacterized	conserved	protein
CENP-F_leu_zip	PF10473.9	gi|408403638|ref|YP_006861621.1|	-	0.26	11.3	12.9	0.93	9.5	0.1	3.1	2	1	1	3	3	3	0	Leucine-rich	repeats	of	kinetochore	protein	Cenp-F/LEK1
BRE1	PF08647.11	gi|408403638|ref|YP_006861621.1|	-	0.28	11.3	14.5	0.84	9.7	3.3	3.9	3	1	0	3	3	3	0	BRE1	E3	ubiquitin	ligase
Phage_TAC_12	PF12363.8	gi|408403638|ref|YP_006861621.1|	-	0.29	11.5	7.6	0.097	13.1	0.6	3.3	3	1	0	3	3	3	0	Phage	tail	assembly	chaperone	protein,	TAC
Collagen_mid	PF15984.5	gi|408403638|ref|YP_006861621.1|	-	0.37	10.5	12.6	0.15	11.8	5.7	3.0	1	1	1	3	3	3	0	Bacterial	collagen,	middle	region
Fib_alpha	PF08702.10	gi|408403638|ref|YP_006861621.1|	-	0.54	10.4	18.1	1.9	8.7	2.9	4.4	2	2	2	4	4	4	0	Fibrinogen	alpha/beta	chain	family
Sec8_exocyst	PF04048.14	gi|408403638|ref|YP_006861621.1|	-	0.89	9.4	12.6	0.066	13.1	0.8	3.7	3	1	1	4	4	4	0	Sec8	exocyst	complex	component	specific	domain
DUF1664	PF07889.12	gi|408403638|ref|YP_006861621.1|	-	1	9.4	21.0	0.27	11.3	3.5	4.2	1	1	4	5	5	5	0	Protein	of	unknown	function	(DUF1664)
Med10	PF09748.9	gi|408403638|ref|YP_006861621.1|	-	1.1	9.3	7.2	7.1	6.6	1.2	3.2	2	1	0	2	2	2	0	Transcription	factor	subunit	Med10	of	Mediator	complex
TssO	PF17561.2	gi|408403638|ref|YP_006861621.1|	-	1.3	9.1	6.8	2.1	8.4	1.0	3.2	2	1	2	4	4	4	0	Type	VI	secretion	system,	TssO
Dak2	PF02734.17	gi|408403638|ref|YP_006861621.1|	-	2	8.3	26.0	1.7	8.5	5.4	3.3	2	1	1	3	3	3	0	DAK2	domain
IFT46_B_C	PF12317.8	gi|408403638|ref|YP_006861621.1|	-	2.4	7.9	8.5	7.8	6.2	0.6	2.9	2	1	1	3	3	3	0	Intraflagellar	transport	complex	B	protein	46	C	terminal
DASH_Dad2	PF08654.10	gi|408403638|ref|YP_006861621.1|	-	3.6	8.1	20.3	2.5	8.6	0.5	5.4	3	2	3	6	6	6	0	DASH	complex	subunit	Dad2
FlaC_arch	PF05377.11	gi|408403638|ref|YP_006861621.1|	-	4.8	7.7	9.2	18	5.8	0.4	4.8	3	1	1	4	4	4	0	Flagella	accessory	protein	C	(FlaC)
Sec34	PF04136.15	gi|408403638|ref|YP_006861621.1|	-	5	7.0	12.7	2.5	7.9	1.5	3.6	3	1	1	4	4	4	0	Sec34-like	family
AIP3	PF03915.13	gi|408403638|ref|YP_006861621.1|	-	7.5	5.5	21.4	4.7	6.2	6.3	2.6	1	1	1	2	2	2	0	Actin	interacting	protein	3
DUF16	PF01519.16	gi|408403638|ref|YP_006861621.1|	-	9.3	6.8	17.1	23	5.5	0.0	4.1	1	1	1	2	2	1	0	Protein	of	unknown	function	DUF16
dCache_1	PF02743.18	gi|408403639|ref|YP_006861622.1|	-	2e-15	57.3	0.0	4.2e-15	56.2	0.0	1.6	1	1	0	1	1	1	1	Cache	domain
MCPsignal	PF00015.21	gi|408403639|ref|YP_006861622.1|	-	6.3e-13	48.9	3.1	1.1e-12	48.2	3.1	1.3	1	0	0	1	1	1	1	Methyl-accepting	chemotaxis	protein	(MCP)	signalling	domain
Diacid_rec	PF05651.13	gi|408403639|ref|YP_006861622.1|	-	0.0096	15.6	0.2	0.63	9.7	0.0	3.3	3	1	0	4	4	4	1	Putative	sugar	diacid	recognition
ApoC-I	PF04691.12	gi|408403639|ref|YP_006861622.1|	-	0.011	15.6	0.7	0.011	15.6	0.7	2.9	3	1	1	4	4	4	0	Apolipoprotein	C-I	(ApoC-1)
OrfB_IS605	PF01385.19	gi|408403643|ref|YP_006861626.1|	-	1.6e-19	70.3	0.1	2.7e-19	69.6	0.1	1.3	1	0	0	1	1	1	1	Probable	transposase
OrfB_Zn_ribbon	PF07282.11	gi|408403643|ref|YP_006861626.1|	-	1.9e-13	50.1	1.8	3.3e-13	49.4	1.8	1.4	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
Peptidase_M74	PF03411.13	gi|408403643|ref|YP_006861626.1|	-	0.0071	15.9	0.3	0.11	12.1	0.1	2.5	2	1	1	3	3	3	1	Penicillin-insensitive	murein	endopeptidase
ATP-sulfurylase	PF01747.17	gi|408403645|ref|YP_006861628.1|	-	1.7e-83	279.3	0.2	2.1e-83	279.0	0.2	1.1	1	0	0	1	1	1	1	ATP-sulfurylase
PUA_2	PF14306.6	gi|408403645|ref|YP_006861628.1|	-	5.3e-43	146.4	0.0	8.3e-43	145.8	0.0	1.3	1	0	0	1	1	1	1	PUA-like	domain
PAPS_reduct	PF01507.19	gi|408403646|ref|YP_006861629.1|	-	2.8e-44	151.2	0.0	3.5e-44	150.9	0.0	1.1	1	0	0	1	1	1	1	Phosphoadenosine	phosphosulfate	reductase	family
DUF3782	PF12644.7	gi|408403646|ref|YP_006861629.1|	-	0.13	12.5	0.1	0.33	11.1	0.1	1.7	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3782)
OrfB_Zn_ribbon	PF07282.11	gi|408403647|ref|YP_006861630.1|	-	7.1e-23	80.3	0.3	1.4e-22	79.4	0.3	1.5	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
OrfB_IS605	PF01385.19	gi|408403647|ref|YP_006861630.1|	-	3.3e-19	69.3	0.9	8.9e-19	67.9	0.9	1.7	1	0	0	1	1	1	1	Probable	transposase
HTH_OrfB_IS605	PF12323.8	gi|408403647|ref|YP_006861630.1|	-	5.6e-15	54.6	0.2	2.3e-14	52.6	0.2	2.1	1	0	0	1	1	1	1	Helix-turn-helix	domain
HypA	PF01155.19	gi|408403647|ref|YP_006861630.1|	-	0.0051	16.8	0.1	0.013	15.5	0.1	1.6	1	0	0	1	1	1	1	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
DZR	PF12773.7	gi|408403647|ref|YP_006861630.1|	-	0.0086	16.1	0.5	0.02	14.9	0.5	1.5	1	0	0	1	1	1	1	Double	zinc	ribbon
Rpr2	PF04032.16	gi|408403647|ref|YP_006861630.1|	-	0.015	15.5	4.0	1.8	8.9	1.2	2.9	2	1	0	2	2	2	0	RNAse	P	Rpr2/Rpp21/SNM1	subunit	domain
FYVE	PF01363.21	gi|408403647|ref|YP_006861630.1|	-	0.026	14.7	0.0	0.065	13.4	0.0	1.7	1	0	0	1	1	1	0	FYVE	zinc	finger
zf_UBZ	PF18439.1	gi|408403647|ref|YP_006861630.1|	-	0.036	13.7	2.0	0.35	10.5	0.1	2.5	1	1	1	2	2	2	0	Ubiquitin-Binding	Zinc	Finger
zf-ribbon_3	PF13248.6	gi|408403647|ref|YP_006861630.1|	-	0.13	11.7	2.9	1.9	8.0	3.2	2.2	1	1	1	2	2	2	0	zinc-ribbon	domain
zinc_ribbon_2	PF13240.6	gi|408403647|ref|YP_006861630.1|	-	0.77	9.6	4.6	9.1	6.2	0.1	2.7	3	0	0	3	3	3	0	zinc-ribbon	domain
Zn_ribbon_SprT	PF17283.2	gi|408403647|ref|YP_006861630.1|	-	3	7.8	9.1	0.15	12.0	2.2	2.3	2	0	0	2	2	2	0	SprT-like	zinc	ribbon	domain
HIT	PF01230.23	gi|408403649|ref|YP_006861632.1|	-	3.4e-23	82.2	0.2	4.6e-23	81.8	0.2	1.1	1	0	0	1	1	1	1	HIT	domain
DcpS_C	PF11969.8	gi|408403649|ref|YP_006861632.1|	-	9.6e-16	58.3	0.0	1.2e-15	58.0	0.0	1.1	1	0	0	1	1	1	1	Scavenger	mRNA	decapping	enzyme	C-term	binding
CwfJ_C_1	PF04677.15	gi|408403649|ref|YP_006861632.1|	-	0.0011	18.8	0.2	0.0021	17.9	0.2	1.6	1	1	0	1	1	1	1	Protein	similar	to	CwfJ	C-terminus	1
HAD_2	PF13419.6	gi|408403650|ref|YP_006861633.1|	-	3.5e-20	72.8	0.0	6.7e-20	71.9	0.0	1.4	1	1	0	1	1	1	1	Haloacid	dehalogenase-like	hydrolase
Hydrolase_like	PF13242.6	gi|408403650|ref|YP_006861633.1|	-	3.1e-12	46.4	0.0	4.9e-12	45.7	0.0	1.3	1	0	0	1	1	1	1	HAD-hyrolase-like
Hydrolase	PF00702.26	gi|408403650|ref|YP_006861633.1|	-	2.9e-10	40.8	0.0	3.9e-10	40.4	0.0	1.3	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
PGP_phosphatase	PF09419.10	gi|408403650|ref|YP_006861633.1|	-	0.0018	17.9	0.0	0.0029	17.3	0.0	1.3	1	0	0	1	1	1	1	Mitochondrial	PGP	phosphatase
DDE_Tnp_1	PF01609.21	gi|408403651|ref|YP_006861634.1|	-	0.0002	21.1	0.0	0.00041	20.0	0.0	1.6	1	1	0	1	1	1	1	Transposase	DDE	domain
DUF1815	PF08844.10	gi|408403651|ref|YP_006861634.1|	-	0.17	11.9	0.2	0.87	9.6	0.1	2.0	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF1815)
Phage_integrase	PF00589.22	gi|408403652|ref|YP_006861635.1|	-	0.073	12.8	0.0	0.11	12.2	0.0	1.3	1	0	0	1	1	1	0	Phage	integrase	family
Rhodanese	PF00581.20	gi|408403654|ref|YP_006861637.1|	-	1.5e-40	138.0	0.1	2.2e-20	73.2	0.0	2.1	2	0	0	2	2	2	2	Rhodanese-like	domain
ComA	PF02679.15	gi|408403656|ref|YP_006861639.1|	-	1.1e-61	208.5	0.3	1.8e-61	207.7	0.1	1.3	2	0	0	2	2	2	1	(2R)-phospho-3-sulfolactate	synthase	(ComA)
MarR_2	PF12802.7	gi|408403656|ref|YP_006861639.1|	-	0.00046	20.0	0.1	0.0013	18.6	0.0	1.8	2	0	0	2	2	2	1	MarR	family
TrmB	PF01978.19	gi|408403656|ref|YP_006861639.1|	-	0.001	18.9	0.0	0.002	18.0	0.0	1.5	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_43	PF09904.9	gi|408403656|ref|YP_006861639.1|	-	0.01	15.7	0.0	0.036	14.0	0.0	1.8	2	0	0	2	2	2	0	Winged	helix-turn	helix
MarR	PF01047.22	gi|408403656|ref|YP_006861639.1|	-	0.024	14.6	0.2	0.048	13.6	0.2	1.5	1	0	0	1	1	1	0	MarR	family
Phage_rep_O	PF04492.13	gi|408403656|ref|YP_006861639.1|	-	0.043	14.4	0.1	0.12	13.0	0.0	1.8	2	0	0	2	2	2	0	Bacteriophage	replication	protein	O
HTH_24	PF13412.6	gi|408403656|ref|YP_006861639.1|	-	0.074	12.6	0.0	0.16	11.6	0.0	1.6	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
HTH_Crp_2	PF13545.6	gi|408403656|ref|YP_006861639.1|	-	0.14	12.2	0.0	0.27	11.3	0.0	1.4	1	0	0	1	1	1	0	Crp-like	helix-turn-helix	domain
HTH_54	PF18607.1	gi|408403656|ref|YP_006861639.1|	-	0.15	12.1	0.0	0.41	10.7	0.0	1.7	1	0	0	1	1	1	0	ParA	helix	turn	helix	domain
NMT1_2	PF13379.6	gi|408403657|ref|YP_006861640.1|	-	2.8e-32	112.4	0.0	3.9e-32	111.9	0.0	1.2	1	0	0	1	1	1	1	NMT1-like	family
NMT1	PF09084.11	gi|408403657|ref|YP_006861640.1|	-	2.5e-12	47.2	0.1	4.1e-12	46.5	0.1	1.4	1	1	0	1	1	1	1	NMT1/THI5	like
Phosphonate-bd	PF12974.7	gi|408403657|ref|YP_006861640.1|	-	2.3e-10	40.5	0.0	3.5e-10	39.9	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter,	phosphonate,	periplasmic	substrate-binding	protein
NMT1_3	PF16868.5	gi|408403657|ref|YP_006861640.1|	-	9.3e-05	22.0	0.1	0.00019	20.9	0.1	1.5	1	1	0	1	1	1	1	NMT1-like	family
SBP_bac_3	PF00497.20	gi|408403657|ref|YP_006861640.1|	-	0.00024	20.6	0.0	0.32	10.4	0.0	2.2	1	1	1	2	2	2	2	Bacterial	extracellular	solute-binding	proteins,	family	3
OpuAC	PF04069.12	gi|408403657|ref|YP_006861640.1|	-	0.0009	18.9	0.2	0.0017	18.0	0.2	1.5	1	1	0	1	1	1	1	Substrate	binding	domain	of	ABC-type	glycine	betaine	transport	system
ABC_tran	PF00005.27	gi|408403658|ref|YP_006861641.1|	-	2.8e-31	108.9	0.0	4.6e-31	108.2	0.0	1.4	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|408403658|ref|YP_006861641.1|	-	2.4e-07	30.9	5.0	0.00051	19.9	0.2	2.4	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
RsgA_GTPase	PF03193.16	gi|408403658|ref|YP_006861641.1|	-	7.2e-06	26.0	0.0	1.4e-05	25.0	0.0	1.4	1	0	0	1	1	1	1	RsgA	GTPase
SMC_N	PF02463.19	gi|408403658|ref|YP_006861641.1|	-	7.1e-05	22.4	2.5	0.0016	17.9	2.5	2.2	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
ABC_ATPase	PF09818.9	gi|408403658|ref|YP_006861641.1|	-	7.6e-05	21.7	0.4	0.018	13.9	0.0	2.2	2	0	0	2	2	2	2	Predicted	ATPase	of	the	ABC	class
AAA_16	PF13191.6	gi|408403658|ref|YP_006861641.1|	-	0.00079	19.9	0.2	0.0052	17.2	0.2	2.2	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_29	PF13555.6	gi|408403658|ref|YP_006861641.1|	-	0.0024	17.6	0.1	0.0059	16.3	0.1	1.6	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_25	PF13481.6	gi|408403658|ref|YP_006861641.1|	-	0.006	16.2	0.1	0.055	13.0	0.0	2.1	2	0	0	2	2	2	1	AAA	domain
MMR_HSR1	PF01926.23	gi|408403658|ref|YP_006861641.1|	-	0.0068	16.5	1.2	0.029	14.5	1.2	2.1	1	1	0	1	1	1	1	50S	ribosome-binding	GTPase
ATPase	PF06745.13	gi|408403658|ref|YP_006861641.1|	-	0.016	14.5	0.0	0.74	9.1	0.0	2.2	2	0	0	2	2	2	0	KaiC
AAA	PF00004.29	gi|408403658|ref|YP_006861641.1|	-	0.019	15.4	0.4	3.3	8.1	0.0	2.5	2	0	0	2	2	2	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
ATPase_2	PF01637.18	gi|408403658|ref|YP_006861641.1|	-	0.022	14.7	0.0	0.043	13.7	0.0	1.5	1	1	0	1	1	1	0	ATPase	domain	predominantly	from	Archaea
AAA_22	PF13401.6	gi|408403658|ref|YP_006861641.1|	-	0.027	14.7	0.4	0.12	12.7	0.0	2.1	3	0	0	3	3	2	0	AAA	domain
Septin	PF00735.18	gi|408403658|ref|YP_006861641.1|	-	0.038	13.3	0.0	0.061	12.6	0.0	1.3	1	0	0	1	1	1	0	Septin
NB-ARC	PF00931.22	gi|408403658|ref|YP_006861641.1|	-	0.047	12.9	0.0	0.11	11.7	0.0	1.5	1	0	0	1	1	1	0	NB-ARC	domain
AAA_15	PF13175.6	gi|408403658|ref|YP_006861641.1|	-	0.053	13.2	5.3	0.33	10.6	0.8	2.3	1	1	0	2	2	2	0	AAA	ATPase	domain
Rad17	PF03215.15	gi|408403658|ref|YP_006861641.1|	-	0.078	12.9	0.1	0.26	11.2	0.0	1.8	2	0	0	2	2	2	0	Rad17	P-loop	domain
AAA_18	PF13238.6	gi|408403658|ref|YP_006861641.1|	-	0.085	13.4	0.1	0.36	11.4	0.0	2.1	2	0	0	2	2	2	0	AAA	domain
AAA_23	PF13476.6	gi|408403658|ref|YP_006861641.1|	-	0.088	13.3	0.1	0.2	12.1	0.1	1.7	1	0	0	1	1	1	0	AAA	domain
Dynamin_N	PF00350.23	gi|408403658|ref|YP_006861641.1|	-	0.11	12.6	0.2	0.25	11.4	0.2	1.6	1	0	0	1	1	1	0	Dynamin	family
AAA_28	PF13521.6	gi|408403658|ref|YP_006861641.1|	-	0.12	12.6	2.4	0.41	10.9	2.4	2.2	1	1	0	1	1	1	0	AAA	domain
BPD_transp_1	PF00528.22	gi|408403659|ref|YP_006861642.1|	-	7.4e-12	45.4	23.0	7.4e-12	45.4	23.0	2.1	1	1	1	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
OrfB_IS605	PF01385.19	gi|408403660|ref|YP_006861643.1|	-	3.5e-15	56.3	0.1	4.2e-15	56.0	0.1	1.1	1	0	0	1	1	1	1	Probable	transposase
HTH_OrfB_IS605	PF12323.8	gi|408403661|ref|YP_006861644.1|	-	6e-13	48.1	0.2	1.5e-12	46.7	0.2	1.7	1	0	0	1	1	1	1	Helix-turn-helix	domain
DAO	PF01266.24	gi|408403662|ref|YP_006861645.1|	-	3.5e-07	30.1	1.6	0.014	15.0	0.0	2.2	1	1	1	2	2	2	2	FAD	dependent	oxidoreductase
FAD_binding_2	PF00890.24	gi|408403662|ref|YP_006861645.1|	-	1.3e-06	27.8	1.3	0.018	14.1	0.0	2.2	2	0	0	2	2	2	2	FAD	binding	domain
Trp_halogenase	PF04820.14	gi|408403662|ref|YP_006861645.1|	-	0.0001	21.3	0.4	0.018	13.9	0.2	2.2	2	0	0	2	2	2	2	Tryptophan	halogenase
FAD_binding_3	PF01494.19	gi|408403662|ref|YP_006861645.1|	-	0.011	15.0	0.4	0.99	8.6	0.1	2.8	2	1	0	2	2	2	0	FAD	binding	domain
GDI	PF00996.18	gi|408403662|ref|YP_006861645.1|	-	0.036	12.6	0.0	0.053	12.0	0.0	1.2	1	0	0	1	1	1	0	GDP	dissociation	inhibitor
HI0933_like	PF03486.14	gi|408403662|ref|YP_006861645.1|	-	0.04	12.6	0.1	0.076	11.7	0.1	1.4	1	0	0	1	1	1	0	HI0933-like	protein
Lycopene_cycl	PF05834.12	gi|408403662|ref|YP_006861645.1|	-	0.043	12.9	0.0	0.057	12.5	0.0	1.2	1	0	0	1	1	1	0	Lycopene	cyclase	protein
Thi4	PF01946.17	gi|408403662|ref|YP_006861645.1|	-	0.048	12.9	0.4	0.24	10.6	0.1	2.2	3	0	0	3	3	3	0	Thi4	family
GerE	PF00196.19	gi|408403662|ref|YP_006861645.1|	-	0.18	11.4	0.0	4.3	7.0	0.0	2.4	2	0	0	2	2	2	0	Bacterial	regulatory	proteins,	luxR	family
Pyr_redox_2	PF07992.14	gi|408403662|ref|YP_006861645.1|	-	0.32	10.2	2.8	0.45	9.7	0.2	2.1	1	1	0	2	2	2	0	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_oxidored	PF12831.7	gi|408403662|ref|YP_006861645.1|	-	0.46	9.8	5.6	2.8	7.2	5.6	2.0	1	1	0	1	1	1	0	FAD	dependent	oxidoreductase
CorA	PF01544.18	gi|408403664|ref|YP_006861647.1|	-	0.13	11.6	0.1	0.14	11.4	0.1	1.1	1	0	0	1	1	1	0	CorA-like	Mg2+	transporter	protein
Translin	PF01997.16	gi|408403665|ref|YP_006861648.1|	-	1.9e-09	37.8	0.3	7.7e-09	35.8	0.3	1.8	1	1	0	1	1	1	1	Translin	family
SOAR	PF16533.5	gi|408403665|ref|YP_006861648.1|	-	0.0091	16.0	0.1	0.054	13.5	0.1	2.0	2	0	0	2	2	2	1	STIM1	Orai1-activating	region
Cucumopine_C	PF18631.1	gi|408403665|ref|YP_006861648.1|	-	0.032	14.2	0.1	0.05	13.5	0.1	1.4	1	0	0	1	1	1	0	Cucumopine	synthase	C-terminal	helical	bundle	domain
OrfB_Zn_ribbon	PF07282.11	gi|408403666|ref|YP_006861649.1|	-	8.2e-23	80.1	0.6	1.6e-22	79.1	0.6	1.6	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
OrfB_IS605	PF01385.19	gi|408403666|ref|YP_006861649.1|	-	4.1e-15	56.1	1.6	4.1e-15	56.1	1.6	1.8	2	0	0	2	2	2	1	Probable	transposase
HTH_OrfB_IS605	PF12323.8	gi|408403666|ref|YP_006861649.1|	-	2.3e-12	46.2	0.1	8e-12	44.5	0.1	2.0	1	0	0	1	1	1	1	Helix-turn-helix	domain
HypA	PF01155.19	gi|408403666|ref|YP_006861649.1|	-	0.00096	19.2	0.1	0.002	18.1	0.1	1.4	1	0	0	1	1	1	1	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
DZR	PF12773.7	gi|408403666|ref|YP_006861649.1|	-	0.019	15.0	0.6	0.04	14.0	0.6	1.5	1	0	0	1	1	1	0	Double	zinc	ribbon
Sigma_reg_C	PF13791.6	gi|408403666|ref|YP_006861649.1|	-	0.043	14.0	0.0	0.092	13.0	0.0	1.6	1	0	0	1	1	1	0	Sigma	factor	regulator	C-terminal
Zn_Tnp_IS91	PF14319.6	gi|408403666|ref|YP_006861649.1|	-	0.045	13.8	1.0	0.21	11.6	0.2	2.5	2	0	0	2	2	2	0	Transposase	zinc-binding	domain
TackOD1	PF18551.1	gi|408403666|ref|YP_006861649.1|	-	0.045	13.4	2.3	0.086	12.5	0.2	2.2	2	0	0	2	2	2	0	Thaumarchaeal	output	domain	1
Rpr2	PF04032.16	gi|408403666|ref|YP_006861649.1|	-	0.064	13.5	6.0	4.4	7.7	0.6	3.6	2	1	1	3	3	3	0	RNAse	P	Rpr2/Rpp21/SNM1	subunit	domain
zf_UBZ	PF18439.1	gi|408403666|ref|YP_006861649.1|	-	0.088	12.4	2.4	0.22	11.2	0.1	2.3	1	1	1	2	2	2	0	Ubiquitin-Binding	Zinc	Finger
zf-ribbon_3	PF13248.6	gi|408403666|ref|YP_006861649.1|	-	0.12	11.8	1.0	7.5	6.1	0.1	2.3	2	0	0	2	2	2	0	zinc-ribbon	domain
zinc_ribbon_4	PF13717.6	gi|408403666|ref|YP_006861649.1|	-	0.12	12.3	1.0	2.9	7.9	0.0	2.4	2	0	0	2	2	2	0	zinc-ribbon	domain
DUF4379	PF14311.6	gi|408403666|ref|YP_006861649.1|	-	0.14	12.6	3.8	0.1	13.0	1.3	2.2	2	0	0	2	2	2	0	Probable	Zinc-ribbon	domain
zf_C2H2_10	PF18414.1	gi|408403666|ref|YP_006861649.1|	-	0.23	11.0	1.0	0.35	10.4	0.2	1.7	2	0	0	2	2	2	0	C2H2	type	zinc-finger
Zn_ribbon_SprT	PF17283.2	gi|408403666|ref|YP_006861649.1|	-	1	9.3	10.4	0.048	13.6	3.4	2.3	2	0	0	2	2	2	0	SprT-like	zinc	ribbon	domain
Hjc	PF01870.18	gi|408403667|ref|YP_006861650.1|	-	4.9e-09	36.1	0.1	9.6e-09	35.1	0.0	1.5	2	0	0	2	2	2	1	Archaeal	holliday	junction	resolvase	(hjc)
BsuBI_PstI_RE	PF06616.11	gi|408403667|ref|YP_006861650.1|	-	0.048	12.9	0.0	0.067	12.5	0.0	1.3	1	0	0	1	1	1	0	BsuBI/PstI	restriction	endonuclease	domain
VRR_NUC	PF08774.11	gi|408403667|ref|YP_006861650.1|	-	0.051	13.6	0.0	0.089	12.9	0.0	1.4	1	0	0	1	1	1	0	VRR-NUC	domain
HSDR_N_2	PF13588.6	gi|408403667|ref|YP_006861650.1|	-	0.067	13.2	0.0	0.23	11.5	0.0	1.8	1	1	1	2	2	2	0	Type	I	restriction	enzyme	R	protein	N	terminus	(HSDR_N)
RRM_2	PF04059.12	gi|408403667|ref|YP_006861650.1|	-	0.095	12.9	0.1	0.19	11.9	0.0	1.5	1	1	0	1	1	1	0	RNA	recognition	motif	2
Cyclophil_like	PF04126.13	gi|408403668|ref|YP_006861651.1|	-	2.4e-34	117.7	0.0	2.8e-34	117.5	0.0	1.1	1	0	0	1	1	1	1	Cyclophilin-like
Cyclophil_like2	PF18050.1	gi|408403668|ref|YP_006861651.1|	-	1.7e-06	27.9	0.0	3.2e-06	27.1	0.0	1.4	1	1	0	1	1	1	1	Cyclophilin-like	family
Lactamase_B	PF00753.27	gi|408403669|ref|YP_006861652.1|	-	1e-12	48.5	1.4	2.3e-12	47.4	1.4	1.5	1	1	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Lactamase_B_2	PF12706.7	gi|408403669|ref|YP_006861652.1|	-	4.7e-06	26.2	0.2	6.8e-06	25.7	0.2	1.3	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
Lactamase_B_3	PF13483.6	gi|408403669|ref|YP_006861652.1|	-	0.00079	19.3	1.7	0.0013	18.7	0.6	1.9	2	1	0	2	2	2	1	Beta-lactamase	superfamily	domain
Lactamase_B_6	PF16661.5	gi|408403669|ref|YP_006861652.1|	-	0.002	17.6	0.1	0.0036	16.7	0.1	1.4	1	0	0	1	1	1	1	Metallo-beta-lactamase	superfamily	domain
DUF3006	PF11213.8	gi|408403670|ref|YP_006861653.1|	-	9e-11	41.8	0.0	1.1e-10	41.5	0.0	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3006)
DUF3629	PF12302.8	gi|408403670|ref|YP_006861653.1|	-	0.032	13.7	0.0	0.034	13.6	0.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3629)
PG_binding_4	PF12229.8	gi|408403670|ref|YP_006861653.1|	-	0.07	13.4	0.1	0.24	11.7	0.1	1.7	1	1	1	2	2	2	0	Putative	peptidoglycan	binding	domain
Arb2	PF09757.9	gi|408403670|ref|YP_006861653.1|	-	0.12	11.5	0.0	0.15	11.2	0.0	1.1	1	0	0	1	1	1	0	Arb2	domain
Hexapep	PF00132.24	gi|408403671|ref|YP_006861654.1|	-	4.6e-13	48.3	15.7	8e-07	28.6	0.2	5.2	4	2	1	5	5	5	3	Bacterial	transferase	hexapeptide	(six	repeats)
Hexapep_2	PF14602.6	gi|408403671|ref|YP_006861654.1|	-	4e-06	26.5	11.7	0.028	14.2	1.6	3.9	3	0	0	3	3	3	3	Hexapeptide	repeat	of	succinyl-transferase
DUF4954	PF16314.5	gi|408403671|ref|YP_006861654.1|	-	0.13	10.3	1.6	0.15	10.1	0.8	1.4	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4954)
Fucokinase	PF07959.12	gi|408403671|ref|YP_006861654.1|	-	0.25	10.3	0.8	1.2	8.0	0.7	2.0	1	1	0	1	1	1	0	L-fucokinase
Peptidase_S8	PF00082.22	gi|408403672|ref|YP_006861655.1|	-	6.1e-51	173.4	4.4	1.2e-50	172.5	4.4	1.5	1	1	0	1	1	1	1	Subtilase	family
Response_reg	PF00072.24	gi|408403673|ref|YP_006861656.1|	-	5.6e-17	61.9	0.0	6.6e-17	61.7	0.0	1.1	1	0	0	1	1	1	1	Response	regulator	receiver	domain
AHJR-like	PF18743.1	gi|408403673|ref|YP_006861656.1|	-	0.015	14.8	0.1	0.17	11.4	0.1	2.0	1	1	1	2	2	2	0	REase_AHJR-like
TFIIB	PF00382.19	gi|408403674|ref|YP_006861657.1|	-	2.7e-31	107.4	2.3	9.1e-15	54.5	0.2	2.2	2	0	0	2	2	2	2	Transcription	factor	TFIIB	repeat
Sigma70_r4	PF04545.16	gi|408403674|ref|YP_006861657.1|	-	2.9e-05	23.5	0.0	0.0041	16.6	0.0	2.8	2	0	0	2	2	2	1	Sigma-70,	region	4
HTH_AsnC-type	PF13404.6	gi|408403674|ref|YP_006861657.1|	-	4.3e-05	23.3	0.1	0.00034	20.4	0.0	2.6	3	0	0	3	3	3	1	AsnC-type	helix-turn-helix	domain
HTH_11	PF08279.12	gi|408403674|ref|YP_006861657.1|	-	0.0002	21.2	0.1	0.042	13.8	0.0	2.7	2	0	0	2	2	2	1	HTH	domain
Cyclin_N	PF00134.23	gi|408403674|ref|YP_006861657.1|	-	0.0017	18.1	0.0	1	9.1	0.0	2.1	2	0	0	2	2	2	2	Cyclin,	N-terminal	domain
Rrf2	PF02082.20	gi|408403674|ref|YP_006861657.1|	-	0.0045	17.3	0.1	6	7.3	0.0	2.9	2	1	1	3	3	3	2	Transcriptional	regulator
RB_B	PF01857.20	gi|408403674|ref|YP_006861657.1|	-	0.0068	16.4	0.0	0.011	15.7	0.0	1.3	1	0	0	1	1	1	1	Retinoblastoma-associated	protein	B	domain
GerE	PF00196.19	gi|408403674|ref|YP_006861657.1|	-	0.0092	15.5	0.5	0.5	10.0	0.0	3.2	3	0	0	3	3	3	1	Bacterial	regulatory	proteins,	luxR	family
HTH_Tnp_ISL3	PF13542.6	gi|408403674|ref|YP_006861657.1|	-	0.012	15.0	0.2	0.1	12.0	0.0	2.6	3	0	0	3	3	3	0	Helix-turn-helix	domain	of	transposase	family	ISL3
Sigma70_r4_2	PF08281.12	gi|408403674|ref|YP_006861657.1|	-	0.022	14.4	0.1	0.16	11.7	0.0	2.4	2	0	0	2	2	2	0	Sigma-70,	region	4
LacI	PF00356.21	gi|408403674|ref|YP_006861657.1|	-	0.69	9.7	5.7	0.71	9.7	0.3	3.3	4	0	0	4	4	4	0	Bacterial	regulatory	proteins,	lacI	family
BNR_2	PF13088.6	gi|408403675|ref|YP_006861658.1|	-	0.0011	18.3	0.2	0.0013	18.1	0.2	1.1	1	0	0	1	1	1	1	BNR	repeat-like	domain
BNR	PF02012.20	gi|408403675|ref|YP_006861658.1|	-	0.0062	16.3	0.0	2.4	8.5	0.0	2.9	2	0	0	2	2	2	2	BNR/Asp-box	repeat
DUF2158	PF09926.9	gi|408403675|ref|YP_006861658.1|	-	0.021	14.6	0.5	0.6	9.9	0.1	2.2	2	0	0	2	2	2	0	Uncharacterized	small	protein	(DUF2158)
DDE_Tnp_1	PF01609.21	gi|408403677|ref|YP_006861660.1|	-	0.0002	21.1	0.0	0.00041	20.0	0.0	1.6	1	1	0	1	1	1	1	Transposase	DDE	domain
DUF1815	PF08844.10	gi|408403677|ref|YP_006861660.1|	-	0.17	11.9	0.2	0.87	9.6	0.1	2.0	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF1815)
ZT_dimer	PF16916.5	gi|408403679|ref|YP_006861662.1|	-	2.8e-46	155.5	8.5	9.3e-17	60.9	0.1	3.4	3	1	0	3	3	3	3	Dimerisation	domain	of	Zinc	Transporter
Cation_efflux	PF01545.21	gi|408403679|ref|YP_006861662.1|	-	1.1e-27	97.1	17.1	1.4e-27	96.7	17.1	1.1	1	0	0	1	1	1	1	Cation	efflux	family
AMP-binding_C_2	PF14535.6	gi|408403679|ref|YP_006861662.1|	-	0.0079	16.5	0.1	0.031	14.6	0.0	2.0	2	0	0	2	2	2	1	AMP-binding	enzyme	C-terminal	domain
BON	PF04972.17	gi|408403679|ref|YP_006861662.1|	-	0.068	13.5	2.5	1.4	9.3	0.0	3.9	5	0	0	5	5	5	0	BON	domain
Peptidase_A24	PF01478.18	gi|408403679|ref|YP_006861662.1|	-	2.8	8.4	7.9	8.1	6.9	7.7	1.9	1	1	0	1	1	1	0	Type	IV	leader	peptidase	family
Response_reg	PF00072.24	gi|408403680|ref|YP_006861663.1|	-	2.7e-26	91.9	0.0	3.1e-26	91.7	0.0	1.0	1	0	0	1	1	1	1	Response	regulator	receiver	domain
Phage_Treg	PF04761.12	gi|408403680|ref|YP_006861663.1|	-	0.062	13.4	0.0	0.095	12.8	0.0	1.3	1	0	0	1	1	1	0	Lactococcus	bacteriophage	putative	transcription	regulator
Carb_kinase	PF01256.17	gi|408403681|ref|YP_006861664.1|	-	3.3e-43	147.9	0.9	3.9e-43	147.7	0.9	1.0	1	0	0	1	1	1	1	Carbohydrate	kinase
HK	PF02110.15	gi|408403681|ref|YP_006861664.1|	-	1.4e-10	41.0	0.8	3.7e-10	39.6	0.8	1.7	1	1	0	1	1	1	1	Hydroxyethylthiazole	kinase	family
Phos_pyr_kin	PF08543.12	gi|408403681|ref|YP_006861664.1|	-	9.3e-06	25.2	0.1	4.6e-05	22.9	0.1	1.9	1	1	0	1	1	1	1	Phosphomethylpyrimidine	kinase
tRNA_bind	PF01588.20	gi|408403682|ref|YP_006861665.1|	-	1.6e-18	66.6	0.1	1.9e-18	66.4	0.1	1.1	1	0	0	1	1	1	1	Putative	tRNA	binding	domain
zf-RRN7	PF11781.8	gi|408403683|ref|YP_006861666.1|	-	0.019	14.6	0.4	0.28	10.9	0.0	2.2	2	0	0	2	2	2	0	Zinc-finger	of	RNA-polymerase	I-specific	TFIIB,	Rrn7
Claudin_2	PF13903.6	gi|408403684|ref|YP_006861667.1|	-	5.6	6.7	7.1	0.28	10.9	0.2	2.0	2	1	0	2	2	2	0	PMP-22/EMP/MP20/Claudin	tight	junction
DUF1529	PF07485.11	gi|408403685|ref|YP_006861668.1|	-	2.7e-10	40.2	0.1	9.6e-10	38.4	0.1	1.9	1	1	1	2	2	2	1	Domain	of	Unknown	Function	(DUF1259)
Usp	PF00582.26	gi|408403687|ref|YP_006861670.1|	-	2.2e-10	41.2	0.1	2.8e-10	40.9	0.1	1.0	1	0	0	1	1	1	1	Universal	stress	protein	family
DUF756	PF05506.12	gi|408403687|ref|YP_006861670.1|	-	0.2	12.6	0.0	0.27	12.2	0.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF756)
CDC48_N	PF02359.18	gi|408403689|ref|YP_006861672.1|	-	0.00031	20.9	0.1	0.00037	20.6	0.1	1.3	1	1	0	1	1	1	1	Cell	division	protein	48	(CDC48),	N-terminal	domain
CDC48_N	PF02359.18	gi|408403690|ref|YP_006861673.1|	-	0.00017	21.7	0.2	0.00031	20.9	0.1	1.5	2	0	0	2	2	2	1	Cell	division	protein	48	(CDC48),	N-terminal	domain
CDC48_2	PF02933.17	gi|408403690|ref|YP_006861673.1|	-	0.088	12.6	0.0	0.18	11.6	0.0	1.6	2	0	0	2	2	2	0	Cell	division	protein	48	(CDC48),	domain	2
DUF3185	PF11381.8	gi|408403692|ref|YP_006861675.1|	-	0.0092	16.0	2.7	0.0092	16.0	2.7	3.2	3	1	1	4	4	4	1	Protein	of	unknown	function	(DUF3185)
Tmemb_18A	PF09771.9	gi|408403692|ref|YP_006861675.1|	-	0.036	14.5	0.5	0.15	12.4	0.1	2.0	1	1	1	2	2	2	0	Transmembrane	protein	188
Trp_oprn_chp	PF09534.10	gi|408403692|ref|YP_006861675.1|	-	0.084	12.7	1.2	0.093	12.5	0.2	1.5	1	1	0	1	1	1	0	Tryptophan-associated	transmembrane	protein	(Trp_oprn_chp)
TMEM72	PF16054.5	gi|408403692|ref|YP_006861675.1|	-	0.093	12.4	5.5	9.6	5.9	5.5	2.6	1	1	0	1	1	1	0	Transmembrane	protein	family	72
PMP22_Claudin	PF00822.20	gi|408403692|ref|YP_006861675.1|	-	0.41	10.5	6.2	0.95	9.3	5.5	2.1	1	1	0	1	1	1	0	PMP-22/EMP/MP20/Claudin	family
DUF2569	PF10754.9	gi|408403692|ref|YP_006861675.1|	-	1.4	9.4	11.4	18	5.8	1.9	2.6	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF2569)
PAC2	PF09754.9	gi|408403693|ref|YP_006861676.1|	-	1.8e-29	103.3	0.0	2e-29	103.1	0.0	1.0	1	0	0	1	1	1	1	PAC2	family
NAD_binding_2	PF03446.15	gi|408403694|ref|YP_006861677.1|	-	6.9e-38	130.3	0.8	1.1e-37	129.7	0.8	1.2	1	0	0	1	1	1	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
NAD_binding_11	PF14833.6	gi|408403694|ref|YP_006861677.1|	-	1.8e-24	86.3	0.2	3.1e-24	85.6	0.2	1.4	1	0	0	1	1	1	1	NAD-binding	of	NADP-dependent	3-hydroxyisobutyrate	dehydrogenase
3HCDH_N	PF02737.18	gi|408403694|ref|YP_006861677.1|	-	1.9e-08	34.4	0.1	6.7e-06	26.1	0.2	2.3	1	1	1	2	2	2	2	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
F420_oxidored	PF03807.17	gi|408403694|ref|YP_006861677.1|	-	2.2e-08	34.6	0.2	7.1e-08	32.9	0.0	2.0	2	1	0	2	2	2	1	NADP	oxidoreductase	coenzyme	F420-dependent
2-Hacid_dh_C	PF02826.19	gi|408403694|ref|YP_006861677.1|	-	1.6e-05	24.4	0.0	2.6e-05	23.6	0.0	1.3	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
Shikimate_DH	PF01488.20	gi|408403694|ref|YP_006861677.1|	-	5.2e-05	23.3	0.2	0.00023	21.2	0.0	2.0	2	1	0	2	2	2	1	Shikimate	/	quinate	5-dehydrogenase
ApbA	PF02558.16	gi|408403694|ref|YP_006861677.1|	-	0.004	16.8	0.0	0.008	15.8	0.0	1.5	1	0	0	1	1	1	1	Ketopantoate	reductase	PanE/ApbA
GFO_IDH_MocA	PF01408.22	gi|408403694|ref|YP_006861677.1|	-	0.028	15.2	0.1	0.066	14.0	0.0	1.7	2	0	0	2	2	1	0	Oxidoreductase	family,	NAD-binding	Rossmann	fold
Rossmann-like	PF10727.9	gi|408403694|ref|YP_006861677.1|	-	0.053	13.4	0.1	0.11	12.4	0.1	1.5	1	0	0	1	1	1	0	Rossmann-like	domain
NAD_Gly3P_dh_N	PF01210.23	gi|408403694|ref|YP_006861677.1|	-	0.091	12.7	0.0	0.19	11.7	0.0	1.6	1	0	0	1	1	1	0	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
Sacchrp_dh_NADP	PF03435.18	gi|408403694|ref|YP_006861677.1|	-	0.099	12.9	0.0	0.18	12.0	0.0	1.6	1	0	0	1	1	1	0	Saccharopine	dehydrogenase	NADP	binding	domain
Radical_SAM	PF04055.21	gi|408403695|ref|YP_006861678.1|	-	9.9e-08	32.5	0.2	1.7e-07	31.8	0.2	1.4	1	0	0	1	1	1	1	Radical	SAM	superfamily
Fer4_12	PF13353.6	gi|408403695|ref|YP_006861678.1|	-	0.011	16.0	0.0	0.031	14.5	0.0	1.7	2	0	0	2	2	2	0	4Fe-4S	single	cluster	domain
Fer4_14	PF13394.6	gi|408403695|ref|YP_006861678.1|	-	0.022	14.9	0.3	0.053	13.7	0.2	1.7	1	1	0	1	1	1	0	4Fe-4S	single	cluster	domain
DUF1848	PF08902.11	gi|408403695|ref|YP_006861678.1|	-	0.089	12.5	3.9	1.4	8.6	3.5	2.3	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF1848)
DUF4917	PF16263.5	gi|408403695|ref|YP_006861678.1|	-	0.11	11.8	0.0	0.19	11.1	0.0	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4917)
NUDIX	PF00293.28	gi|408403697|ref|YP_006861680.1|	-	2.2e-21	76.3	0.0	2.5e-21	76.1	0.0	1.1	1	0	0	1	1	1	1	NUDIX	domain
NUDIX_4	PF14815.6	gi|408403697|ref|YP_006861680.1|	-	0.0046	16.9	0.0	0.009	16.0	0.0	1.5	1	1	0	1	1	1	1	NUDIX	domain
DUF4916	PF16262.5	gi|408403697|ref|YP_006861680.1|	-	0.018	14.5	0.0	0.025	14.1	0.0	1.3	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4916)
OrfB_Zn_ribbon	PF07282.11	gi|408403698|ref|YP_006861681.1|	-	1.1e-19	70.2	0.4	2e-19	69.2	0.4	1.5	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
OrfB_IS605	PF01385.19	gi|408403698|ref|YP_006861681.1|	-	9.2e-18	64.6	1.1	2.1e-17	63.4	1.1	1.6	1	0	0	1	1	1	1	Probable	transposase
HTH_OrfB_IS605	PF12323.8	gi|408403698|ref|YP_006861681.1|	-	1.6e-12	46.7	0.2	4.1e-12	45.4	0.2	1.7	1	0	0	1	1	1	1	Helix-turn-helix	domain
Sigma_reg_C	PF13791.6	gi|408403698|ref|YP_006861681.1|	-	0.026	14.7	0.1	0.087	13.0	0.0	1.9	2	0	0	2	2	2	0	Sigma	factor	regulator	C-terminal
HypA	PF01155.19	gi|408403698|ref|YP_006861681.1|	-	0.036	14.1	0.1	0.086	12.9	0.1	1.6	1	0	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
DZR	PF12773.7	gi|408403698|ref|YP_006861681.1|	-	0.079	13.0	0.4	0.18	11.9	0.4	1.5	1	0	0	1	1	1	0	Double	zinc	ribbon
zf_UBZ	PF18439.1	gi|408403698|ref|YP_006861681.1|	-	0.11	12.1	0.8	1.1	8.9	0.1	2.3	2	0	0	2	2	2	0	Ubiquitin-Binding	Zinc	Finger
Rpr2	PF04032.16	gi|408403698|ref|YP_006861681.1|	-	0.13	12.6	8.4	3.3	8.1	0.2	3.5	2	1	1	3	3	3	0	RNAse	P	Rpr2/Rpp21/SNM1	subunit	domain
DUF3695	PF12494.8	gi|408403698|ref|YP_006861681.1|	-	0.83	9.6	4.2	13	5.7	0.4	2.8	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF3695)
FeoC	PF09012.10	gi|408403699|ref|YP_006861682.1|	-	0.088	12.9	1.0	3.1	7.9	0.0	2.3	2	1	0	2	2	2	0	FeoC	like	transcriptional	regulator
UPF0051	PF01458.17	gi|408403700|ref|YP_006861683.1|	-	4.2e-74	248.9	0.4	6.3e-74	248.3	0.4	1.3	1	0	0	1	1	1	1	Uncharacterized	protein	family	(UPF0051)
UPF0051	PF01458.17	gi|408403701|ref|YP_006861684.1|	-	4.5e-60	203.0	0.2	5.9e-60	202.7	0.2	1.1	1	0	0	1	1	1	1	Uncharacterized	protein	family	(UPF0051)
Rieske	PF00355.26	gi|408403702|ref|YP_006861685.1|	-	7.8e-19	67.4	0.0	9.1e-19	67.2	0.0	1.0	1	0	0	1	1	1	1	Rieske	[2Fe-2S]	domain
Rieske_2	PF13806.6	gi|408403702|ref|YP_006861685.1|	-	1.2e-13	50.9	0.0	1.3e-13	50.7	0.0	1.0	1	0	0	1	1	1	1	Rieske-like	[2Fe-2S]	domain
Aminotran_5	PF00266.19	gi|408403703|ref|YP_006861686.1|	-	3.7e-153	509.9	1.1	4.2e-153	509.7	1.1	1.0	1	0	0	1	1	1	1	Aminotransferase	class-V
Beta_elim_lyase	PF01212.21	gi|408403703|ref|YP_006861686.1|	-	3e-07	30.0	0.1	1.7e-06	27.6	0.1	1.8	1	1	1	2	2	2	1	Beta-eliminating	lyase
Aminotran_1_2	PF00155.21	gi|408403703|ref|YP_006861686.1|	-	4.2e-06	26.2	0.2	6.4e-06	25.6	0.2	1.3	1	0	0	1	1	1	1	Aminotransferase	class	I	and	II
Cys_Met_Meta_PP	PF01053.20	gi|408403703|ref|YP_006861686.1|	-	8.9e-05	21.2	0.2	0.00016	20.4	0.2	1.4	1	0	0	1	1	1	1	Cys/Met	metabolism	PLP-dependent	enzyme
DegT_DnrJ_EryC1	PF01041.17	gi|408403703|ref|YP_006861686.1|	-	0.001	18.4	0.2	0.001	18.4	0.2	1.4	2	0	0	2	2	2	1	DegT/DnrJ/EryC1/StrS	aminotransferase	family
SelA	PF03841.13	gi|408403703|ref|YP_006861686.1|	-	0.0061	15.6	0.3	0.028	13.4	0.2	1.8	1	1	0	1	1	1	1	L-seryl-tRNA	selenium	transferase
NifU_N	PF01592.16	gi|408403704|ref|YP_006861687.1|	-	1.1e-32	112.9	0.0	1.3e-32	112.6	0.0	1.0	1	0	0	1	1	1	1	NifU-like	N	terminal	domain
TSCPD	PF12637.7	gi|408403704|ref|YP_006861687.1|	-	0.038	14.2	0.0	0.053	13.8	0.0	1.2	1	0	0	1	1	1	0	TSCPD	domain
SufE	PF02657.15	gi|408403704|ref|YP_006861687.1|	-	0.089	12.6	0.0	0.11	12.3	0.0	1.2	1	0	0	1	1	1	0	Fe-S	metabolism	associated	domain
Lip_prot_lig_C	PF10437.9	gi|408403704|ref|YP_006861687.1|	-	0.11	12.5	0.0	0.16	12.0	0.0	1.4	1	0	0	1	1	1	0	Bacterial	lipoate	protein	ligase	C-terminus
Phage_TAC_12	PF12363.8	gi|408403705|ref|YP_006861688.1|	-	0.0028	18.0	0.1	0.0037	17.7	0.1	1.1	1	0	0	1	1	1	1	Phage	tail	assembly	chaperone	protein,	TAC
Ephrin_rec_like	PF07699.13	gi|408403705|ref|YP_006861688.1|	-	0.032	14.0	1.7	0.046	13.5	1.7	1.2	1	0	0	1	1	1	0	Putative	ephrin-receptor	like
zf-RRN7	PF11781.8	gi|408403705|ref|YP_006861688.1|	-	0.26	11.0	5.4	2.8	7.7	2.1	2.3	1	1	1	2	2	2	0	Zinc-finger	of	RNA-polymerase	I-specific	TFIIB,	Rrn7
Zn-ribbon_8	PF09723.10	gi|408403705|ref|YP_006861688.1|	-	0.9	9.7	4.8	4.1	7.6	4.8	2.0	1	1	0	1	1	1	0	Zinc	ribbon	domain
PAP2	PF01569.21	gi|408403706|ref|YP_006861689.1|	-	5e-19	68.4	4.3	5e-19	68.4	4.3	2.3	2	1	0	2	2	2	1	PAP2	superfamily
PAP2_3	PF14378.6	gi|408403706|ref|YP_006861689.1|	-	1.6e-11	44.3	3.5	1.6e-11	44.3	3.5	2.0	1	1	1	2	2	2	2	PAP2	superfamily
PAP2_C	PF14360.6	gi|408403706|ref|YP_006861689.1|	-	0.0024	18.4	0.4	0.0024	18.4	0.4	2.8	3	0	0	3	3	3	1	PAP2	superfamily	C-terminal
DUF1430	PF07242.11	gi|408403706|ref|YP_006861689.1|	-	0.12	12.6	9.6	1.1	9.6	0.1	2.3	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1430)
Wzy_C	PF04932.15	gi|408403706|ref|YP_006861689.1|	-	1.8	8.1	13.4	1	9.0	3.3	2.9	3	0	0	3	3	3	0	O-Antigen	ligase
CobS_N	PF12556.8	gi|408403707|ref|YP_006861690.1|	-	0.22	11.2	0.6	0.28	10.9	0.0	1.5	2	0	0	2	2	2	0	Cobaltochelatase	CobS	subunit	N	terminal
MttA_Hcf106	PF02416.16	gi|408403711|ref|YP_006861694.1|	-	3.6e-10	39.0	0.1	6.8e-10	38.1	0.1	1.5	1	0	0	1	1	1	1	mttA/Hcf106	family
Lip_A_acyltrans	PF03279.13	gi|408403711|ref|YP_006861694.1|	-	0.039	13.1	0.1	0.049	12.8	0.1	1.1	1	0	0	1	1	1	0	Bacterial	lipid	A	biosynthesis	acyltransferase
ELFV_dehydrog	PF00208.21	gi|408403712|ref|YP_006861695.1|	-	5.4e-75	252.2	3.7	9.1e-75	251.5	3.4	1.5	2	0	0	2	2	2	1	Glutamate/Leucine/Phenylalanine/Valine	dehydrogenase
ELFV_dehydrog_N	PF02812.18	gi|408403712|ref|YP_006861695.1|	-	2.9e-60	201.9	0.0	5.7e-60	200.9	0.0	1.5	1	0	0	1	1	1	1	Glu/Leu/Phe/Val	dehydrogenase,	dimerisation	domain
2-Hacid_dh_C	PF02826.19	gi|408403712|ref|YP_006861695.1|	-	0.066	12.6	0.3	0.12	11.7	0.3	1.4	1	0	0	1	1	1	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
Fe-S_biosyn	PF01521.20	gi|408403713|ref|YP_006861696.1|	-	3.9e-25	88.2	0.0	4.3e-25	88.1	0.0	1.0	1	0	0	1	1	1	1	Iron-sulphur	cluster	biosynthesis
FKBP26_C	PF18046.1	gi|408403714|ref|YP_006861697.1|	-	3.9e-16	58.9	0.1	7.6e-16	58.0	0.1	1.5	1	0	0	1	1	1	1	FKBP26_C-terminal
FKBP_C	PF00254.28	gi|408403714|ref|YP_006861697.1|	-	1.1e-12	48.0	0.0	2.5e-12	46.9	0.0	1.7	1	1	0	1	1	1	1	FKBP-type	peptidyl-prolyl	cis-trans	isomerase
Tn7_Tnp_TnsA_C	PF08721.11	gi|408403714|ref|YP_006861697.1|	-	0.042	14.5	0.0	1.6	9.4	0.0	2.4	2	0	0	2	2	2	0	TnsA	endonuclease	C	terminal
Asp23	PF03780.13	gi|408403714|ref|YP_006861697.1|	-	0.076	13.4	0.1	0.72	10.3	0.1	2.2	2	0	0	2	2	2	0	Asp23	family,	cell	envelope-related	function
Aminotran_5	PF00266.19	gi|408403715|ref|YP_006861698.1|	-	2e-36	125.8	0.0	2.5e-36	125.4	0.0	1.1	1	0	0	1	1	1	1	Aminotransferase	class-V
Cys_Met_Meta_PP	PF01053.20	gi|408403715|ref|YP_006861698.1|	-	0.013	14.1	0.0	0.019	13.5	0.0	1.2	1	0	0	1	1	1	0	Cys/Met	metabolism	PLP-dependent	enzyme
HemolysinCabind	PF00353.19	gi|408403716|ref|YP_006861699.1|	-	1.2e-26	92.3	53.7	4.4e-12	45.7	10.8	8.8	7	1	1	9	9	9	7	RTX	calcium-binding	nonapeptide	repeat	(4	copies)
Peptidase_M24	PF00557.24	gi|408403717|ref|YP_006861700.1|	-	1.2e-55	188.5	0.0	1.5e-55	188.1	0.0	1.1	1	0	0	1	1	1	1	Metallopeptidase	family	M24
Creatinase_N	PF01321.18	gi|408403717|ref|YP_006861700.1|	-	2.2e-09	38.0	0.0	5.2e-09	36.9	0.0	1.6	1	0	0	1	1	1	1	Creatinase/Prolidase	N-terminal	domain
MC1	PF05854.11	gi|408403717|ref|YP_006861700.1|	-	0.06	13.6	0.0	9.2	6.6	0.0	2.7	3	0	0	3	3	3	0	Non-histone	chromosomal	protein	MC1
DYW_deaminase	PF14432.6	gi|408403717|ref|YP_006861700.1|	-	0.084	12.7	0.1	2.5	8.0	0.0	2.4	2	0	0	2	2	2	0	DYW	family	of	nucleic	acid	deaminases
DUF3426	PF11906.8	gi|408403718|ref|YP_006861701.1|	-	0.0014	18.8	0.0	2	8.5	0.0	2.6	1	1	1	2	2	2	2	Protein	of	unknown	function	(DUF3426)
DUF3157	PF11355.8	gi|408403718|ref|YP_006861701.1|	-	0.061	12.9	0.1	0.84	9.2	0.0	2.2	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3157)
fn3_3	PF14686.6	gi|408403718|ref|YP_006861701.1|	-	0.15	11.9	0.0	0.32	10.8	0.0	1.5	1	0	0	1	1	1	0	Polysaccharide	lyase	family	4,	domain	II
DFP	PF04127.15	gi|408403719|ref|YP_006861702.1|	-	1.2e-55	188.2	6.0	1.5e-54	184.7	3.0	2.2	2	0	0	2	2	2	2	DNA	/	pantothenate	metabolism	flavoprotein
Flavoprotein	PF02441.19	gi|408403719|ref|YP_006861702.1|	-	3.5e-34	117.8	1.6	3.5e-34	117.8	1.6	1.6	2	0	0	2	2	2	1	Flavoprotein
YjeF_N	PF03853.15	gi|408403719|ref|YP_006861702.1|	-	0.00029	20.8	0.2	0.16	11.8	0.0	2.4	2	0	0	2	2	2	2	YjeF-related	protein	N-terminus
PALP	PF00291.25	gi|408403719|ref|YP_006861702.1|	-	0.023	14.1	0.4	0.057	12.8	0.1	1.8	2	0	0	2	2	2	0	Pyridoxal-phosphate	dependent	enzyme
Pantoate_transf	PF02548.15	gi|408403720|ref|YP_006861703.1|	-	2.5e-107	358.1	2.0	2.8e-107	357.9	2.0	1.0	1	0	0	1	1	1	1	Ketopantoate	hydroxymethyltransferase
PEP_mutase	PF13714.6	gi|408403720|ref|YP_006861703.1|	-	0.0074	15.8	1.6	0.0083	15.6	0.3	1.6	2	0	0	2	2	2	1	Phosphoenolpyruvate	phosphomutase
Asp_Glu_race	PF01177.22	gi|408403720|ref|YP_006861703.1|	-	0.1	12.4	0.0	0.34	10.7	0.0	1.8	1	1	1	2	2	2	0	Asp/Glu/Hydantoin	racemase
PPS_PS	PF02006.16	gi|408403721|ref|YP_006861704.1|	-	2.8e-75	251.7	0.5	3.5e-75	251.4	0.5	1.1	1	0	0	1	1	1	1	Phosphopantothenate/pantothenate	synthetase
Phage-tail_3	PF13550.6	gi|408403721|ref|YP_006861704.1|	-	0.007	16.2	0.1	0.019	14.8	0.0	1.6	2	0	0	2	2	2	1	Putative	phage	tail	protein
Phage_GPD	PF05954.11	gi|408403721|ref|YP_006861704.1|	-	0.11	11.8	0.1	0.15	11.3	0.1	1.2	1	0	0	1	1	1	0	Phage	late	control	gene	D	protein	(GPD)
GHMP_kinases_N	PF00288.26	gi|408403722|ref|YP_006861705.1|	-	2.2e-08	34.2	2.3	4.3e-08	33.3	2.3	1.6	1	0	0	1	1	1	1	GHMP	kinases	N	terminal	domain
PhoU	PF01895.19	gi|408403723|ref|YP_006861706.1|	-	1.7e-14	54.0	9.8	6.9e-10	39.3	4.9	2.6	2	0	0	2	2	2	2	PhoU	domain
MazE_antitoxin	PF04014.18	gi|408403723|ref|YP_006861706.1|	-	0.00033	20.5	0.1	0.001	19.0	0.1	1.9	1	0	0	1	1	1	1	Antidote-toxin	recognition	MazE,	bacterial	antitoxin
APS_kinase	PF01583.20	gi|408403723|ref|YP_006861706.1|	-	0.12	12.3	0.0	0.79	9.6	0.0	2.1	2	0	0	2	2	2	0	Adenylylsulphate	kinase
Patatin	PF01734.22	gi|408403724|ref|YP_006861707.1|	-	3.7e-15	56.6	0.0	4.1e-15	56.5	0.0	1.0	1	0	0	1	1	1	1	Patatin-like	phospholipase
ACT	PF01842.25	gi|408403724|ref|YP_006861707.1|	-	0.055	13.3	0.2	0.084	12.7	0.2	1.5	1	1	0	1	1	1	0	ACT	domain
DDE_Tnp_1	PF01609.21	gi|408403725|ref|YP_006861708.1|	-	0.0002	21.1	0.0	0.00041	20.0	0.0	1.6	1	1	0	1	1	1	1	Transposase	DDE	domain
DUF1815	PF08844.10	gi|408403725|ref|YP_006861708.1|	-	0.17	11.9	0.2	0.87	9.6	0.1	2.0	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF1815)
DUF3734	PF12536.8	gi|408403726|ref|YP_006861709.1|	-	0.0012	19.2	0.3	0.0046	17.3	0.3	2.0	1	1	0	1	1	1	1	Patatin	phospholipase
DUF3461	PF11944.8	gi|408403726|ref|YP_006861709.1|	-	0.015	15.4	1.5	0.028	14.5	1.5	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3461)
GHMP_kinases_N	PF00288.26	gi|408403727|ref|YP_006861710.1|	-	3.9e-19	68.6	0.3	3.9e-19	68.6	0.3	2.2	2	0	0	2	2	2	1	GHMP	kinases	N	terminal	domain
GHMP_kinases_C	PF08544.13	gi|408403727|ref|YP_006861710.1|	-	1.5e-15	57.3	0.6	3.5e-15	56.1	0.6	1.7	1	0	0	1	1	1	1	GHMP	kinases	C	terminal
Memo	PF01875.17	gi|408403728|ref|YP_006861711.1|	-	3.6e-77	259.2	0.0	4.1e-77	259.0	0.0	1.0	1	0	0	1	1	1	1	Memo-like	protein
LigB	PF02900.18	gi|408403728|ref|YP_006861711.1|	-	3.2e-05	23.1	0.0	3.9e-05	22.9	0.0	1.1	1	0	0	1	1	1	1	Catalytic	LigB	subunit	of	aromatic	ring-opening	dioxygenase
Ribosomal_S2	PF00318.20	gi|408403729|ref|YP_006861712.1|	-	2.5e-21	75.9	0.1	6.1e-13	48.5	0.2	2.1	1	1	1	2	2	2	2	Ribosomal	protein	S2
Peripla_BP_4	PF13407.6	gi|408403729|ref|YP_006861712.1|	-	0.081	12.5	1.0	0.14	11.8	1.0	1.3	1	0	0	1	1	1	0	Periplasmic	binding	protein	domain
PD40	PF07676.12	gi|408403730|ref|YP_006861713.1|	-	1.9e-07	30.9	0.2	0.032	14.2	0.0	3.6	3	0	0	3	3	3	2	WD40-like	Beta	Propeller	Repeat
Gmad1	PF10647.9	gi|408403730|ref|YP_006861713.1|	-	0.00018	21.3	0.0	0.0003	20.6	0.0	1.2	1	0	0	1	1	1	1	Lipoprotein	LpqB	beta-propeller	domain
DPPIV_N	PF00930.21	gi|408403730|ref|YP_006861713.1|	-	0.0013	17.6	0.0	0.0033	16.2	0.0	1.6	1	0	0	1	1	1	1	Dipeptidyl	peptidase	IV	(DPP	IV)	N-terminal	region
eIF2A	PF08662.11	gi|408403730|ref|YP_006861713.1|	-	0.0077	16.1	0.4	0.4	10.5	0.0	2.4	1	1	1	2	2	2	1	Eukaryotic	translation	initiation	factor	eIF2A
SGL	PF08450.12	gi|408403730|ref|YP_006861713.1|	-	0.015	14.9	0.0	0.033	13.8	0.0	1.5	2	0	0	2	2	2	0	SMP-30/Gluconolactonase/LRE-like	region
Glyco_hydro_80	PF13647.6	gi|408403730|ref|YP_006861713.1|	-	0.018	14.6	0.2	0.026	14.0	0.2	1.2	1	0	0	1	1	1	0	Glycosyl	hydrolase	family	80	of	chitosanase	A
Peptidase_S9_N	PF02897.15	gi|408403730|ref|YP_006861713.1|	-	0.041	12.7	0.0	0.066	12.0	0.0	1.3	1	0	0	1	1	1	0	Prolyl	oligopeptidase,	N-terminal	beta-propeller	domain
Enolase_C	PF00113.22	gi|408403734|ref|YP_006861717.1|	-	8.4e-59	199.2	0.1	1.1e-58	198.8	0.1	1.1	1	0	0	1	1	1	1	Enolase,	C-terminal	TIM	barrel	domain
Enolase_N	PF03952.16	gi|408403734|ref|YP_006861717.1|	-	8.9e-25	87.4	0.1	2.7e-24	85.8	0.0	1.9	2	0	0	2	2	2	1	Enolase,	N-terminal	domain
MR_MLE_C	PF13378.6	gi|408403734|ref|YP_006861717.1|	-	4.1e-10	39.6	0.0	2.6e-09	37.0	0.0	1.8	1	1	1	2	2	2	1	Enolase	C-terminal	domain-like
RNA_pol_N	PF01194.17	gi|408403735|ref|YP_006861718.1|	-	1.5e-27	95.6	0.8	2.2e-27	95.1	0.8	1.2	1	0	0	1	1	1	1	RNA	polymerases	N	/	8	kDa	subunit
BLI1	PF17324.2	gi|408403735|ref|YP_006861718.1|	-	0.047	14.4	0.0	0.051	14.2	0.0	1.2	1	0	0	1	1	1	0	BLOC-1	interactor	1
ProQ	PF04352.13	gi|408403737|ref|YP_006861720.1|	-	0.11	12.3	0.0	14	5.6	0.0	2.2	2	0	0	2	2	2	0	ProQ/FINO	family
Cupredoxin_1	PF13473.6	gi|408403738|ref|YP_006861721.1|	-	1e-05	25.5	0.0	1.6e-05	24.9	0.0	1.4	1	0	0	1	1	1	1	Cupredoxin-like	domain
Copper-bind	PF00127.20	gi|408403738|ref|YP_006861721.1|	-	0.00046	20.6	0.0	0.00082	19.8	0.0	1.4	1	1	0	1	1	1	1	Copper	binding	proteins,	plastocyanin/azurin	family
DUF2613	PF11021.8	gi|408403738|ref|YP_006861721.1|	-	0.0059	16.7	0.8	0.012	15.7	0.3	1.8	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF2613)
ETRAMP	PF09716.10	gi|408403738|ref|YP_006861721.1|	-	0.01	15.9	0.3	0.015	15.3	0.3	1.2	1	0	0	1	1	1	0	Malarial	early	transcribed	membrane	protein	(ETRAMP)
FeoB_C	PF07664.12	gi|408403738|ref|YP_006861721.1|	-	0.14	11.9	0.1	0.23	11.2	0.1	1.3	1	0	0	1	1	1	0	Ferrous	iron	transport	protein	B	C	terminus
LexA_DNA_bind	PF01726.16	gi|408403739|ref|YP_006861722.1|	-	0.02	14.6	0.0	0.029	14.1	0.0	1.2	1	0	0	1	1	1	0	LexA	DNA	binding	domain
DUF4423	PF14394.6	gi|408403739|ref|YP_006861722.1|	-	0.027	14.2	0.0	0.037	13.8	0.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4423)
TrmB	PF01978.19	gi|408403739|ref|YP_006861722.1|	-	0.094	12.6	0.1	0.14	12.1	0.1	1.3	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
DDE_Tnp_1	PF01609.21	gi|408403740|ref|YP_006861723.1|	-	0.0002	21.1	0.0	0.00041	20.0	0.0	1.6	1	1	0	1	1	1	1	Transposase	DDE	domain
DUF1815	PF08844.10	gi|408403740|ref|YP_006861723.1|	-	0.17	11.9	0.2	0.87	9.6	0.1	2.0	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF1815)
Copper-bind	PF00127.20	gi|408403742|ref|YP_006861725.1|	-	2.6e-13	50.2	0.1	3.7e-13	49.8	0.1	1.2	1	0	0	1	1	1	1	Copper	binding	proteins,	plastocyanin/azurin	family
Cupredoxin_1	PF13473.6	gi|408403742|ref|YP_006861725.1|	-	2.5e-06	27.6	0.0	4.3e-06	26.8	0.0	1.4	1	0	0	1	1	1	1	Cupredoxin-like	domain
DUF4651	PF15513.6	gi|408403742|ref|YP_006861725.1|	-	0.25	11.2	0.1	0.25	11.2	0.1	1.7	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4651)
Phage_integrase	PF00589.22	gi|408403745|ref|YP_006861728.1|	-	0.075	12.8	0.0	0.12	12.1	0.0	1.6	1	1	0	1	1	1	0	Phage	integrase	family
HTH_38	PF13936.6	gi|408403746|ref|YP_006861729.1|	-	0.0049	16.6	0.1	0.016	14.9	0.1	1.8	1	0	0	1	1	1	1	Helix-turn-helix	domain
Baculo_gp41	PF04700.12	gi|408403746|ref|YP_006861729.1|	-	0.023	14.5	0.0	0.037	13.8	0.0	1.4	1	0	0	1	1	1	0	Structural	glycoprotein	p40/gp41	conserved	region
MazE_antitoxin	PF04014.18	gi|408403747|ref|YP_006861730.1|	-	0.067	13.1	0.1	0.096	12.7	0.1	1.4	1	0	0	1	1	1	0	Antidote-toxin	recognition	MazE,	bacterial	antitoxin
AbiEii	PF08843.11	gi|408403749|ref|YP_006861732.1|	-	4.4e-05	23.6	0.9	0.02	14.9	0.2	2.0	1	1	1	2	2	2	2	Nucleotidyl	transferase	AbiEii	toxin,	Type	IV	TA	system
NTP_transf_5	PF14907.6	gi|408403749|ref|YP_006861732.1|	-	0.0018	18.0	0.2	0.022	14.4	0.2	2.0	1	1	0	1	1	1	1	Uncharacterised	nucleotidyltransferase
DUF2204	PF09970.9	gi|408403749|ref|YP_006861732.1|	-	0.0043	16.7	1.5	0.075	12.7	1.5	2.1	1	1	0	1	1	1	1	Nucleotidyl	transferase	of	unknown	function	(DUF2204)
Hat1_N	PF10394.9	gi|408403749|ref|YP_006861732.1|	-	0.0058	16.9	0.0	0.0069	16.6	0.0	1.2	1	0	0	1	1	1	1	Histone	acetyl	transferase	HAT1	N-terminus
LEA_2	PF03168.13	gi|408403750|ref|YP_006861733.1|	-	5.7e-08	33.2	0.0	7.7e-08	32.8	0.0	1.2	1	0	0	1	1	1	1	Late	embryogenesis	abundant	protein
BNR_2	PF13088.6	gi|408403751|ref|YP_006861734.1|	-	0.00065	19.1	0.2	0.054	12.8	0.2	2.5	2	1	0	2	2	2	2	BNR	repeat-like	domain
Big_3_5	PF16640.5	gi|408403751|ref|YP_006861734.1|	-	0.00072	19.7	1.0	16	5.8	0.0	4.7	4	1	0	4	4	4	2	Bacterial	Ig-like	domain	(group	3)
Kelch_6	PF13964.6	gi|408403751|ref|YP_006861734.1|	-	0.014	15.7	5.6	3.5	8.0	0.1	4.6	5	0	0	5	5	5	0	Kelch	motif
BNR	PF02012.20	gi|408403751|ref|YP_006861734.1|	-	0.015	15.2	3.0	15	6.1	0.0	5.1	4	0	0	4	4	4	0	BNR/Asp-box	repeat
BOF	PF04076.13	gi|408403752|ref|YP_006861735.1|	-	0.092	12.8	0.1	0.12	12.5	0.1	1.2	1	0	0	1	1	1	0	Bacterial	OB	fold	(BOF)	protein
Rubrerythrin	PF02915.17	gi|408403753|ref|YP_006861736.1|	-	0.00092	19.6	1.1	0.0049	17.3	1.1	2.0	1	1	0	1	1	1	1	Rubrerythrin
Ferritin	PF00210.24	gi|408403753|ref|YP_006861736.1|	-	0.0031	17.4	1.9	0.0099	15.8	1.7	1.9	1	1	0	1	1	1	1	Ferritin-like	domain
Phenol_Hydrox	PF02332.18	gi|408403753|ref|YP_006861736.1|	-	0.0063	16.1	0.1	0.92	9.0	0.0	2.0	2	0	0	2	2	2	2	Methane/Phenol/Toluene	Hydroxylase
Kinase-PPPase	PF03618.14	gi|408403753|ref|YP_006861736.1|	-	0.0072	16.1	0.2	0.0085	15.9	0.2	1.1	1	0	0	1	1	1	1	Kinase/pyrophosphorylase
DUF892	PF05974.12	gi|408403753|ref|YP_006861736.1|	-	0.028	14.5	1.5	2.6	8.0	0.2	2.1	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF892)
Herpes_V23	PF01802.17	gi|408403753|ref|YP_006861736.1|	-	0.06	12.8	0.1	0.063	12.7	0.1	1.1	1	0	0	1	1	1	0	Herpesvirus	VP23	like	capsid	protein
HTH_45	PF14947.6	gi|408403754|ref|YP_006861737.1|	-	6.3e-17	61.3	0.0	7.8e-17	61.0	0.0	1.1	1	0	0	1	1	1	1	Winged	helix-turn-helix
DUF4364	PF14277.6	gi|408403754|ref|YP_006861737.1|	-	0.092	12.5	0.1	0.13	12.0	0.1	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4364)
HTH_27	PF13463.6	gi|408403754|ref|YP_006861737.1|	-	0.14	12.7	0.0	0.24	11.9	0.0	1.4	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
AhpC-TSA	PF00578.21	gi|408403755|ref|YP_006861738.1|	-	5.7e-40	136.1	0.0	6.6e-40	135.9	0.0	1.0	1	0	0	1	1	1	1	AhpC/TSA	family
Redoxin	PF08534.10	gi|408403755|ref|YP_006861738.1|	-	2.3e-26	92.3	0.0	2.7e-26	92.1	0.0	1.1	1	0	0	1	1	1	1	Redoxin
AhpC-TSA_2	PF13911.6	gi|408403755|ref|YP_006861738.1|	-	4.6e-08	33.2	0.0	9.7e-08	32.1	0.0	1.6	1	1	0	1	1	1	1	AhpC/TSA	antioxidant	enzyme
DUF899	PF05988.12	gi|408403755|ref|YP_006861738.1|	-	9.3e-08	31.9	0.0	1.2e-07	31.5	0.0	1.1	1	0	0	1	1	1	1	Bacterial	protein	of	unknown	function	(DUF899)
Thioredoxin_8	PF13905.6	gi|408403755|ref|YP_006861738.1|	-	4.7e-06	26.8	0.0	6.8e-06	26.3	0.0	1.3	1	0	0	1	1	1	1	Thioredoxin-like
GSHPx	PF00255.19	gi|408403755|ref|YP_006861738.1|	-	0.0087	15.6	0.0	0.014	15.0	0.0	1.4	1	0	0	1	1	1	1	Glutathione	peroxidase
SCO1-SenC	PF02630.14	gi|408403755|ref|YP_006861738.1|	-	0.013	15.4	0.0	0.028	14.3	0.0	1.6	1	1	0	1	1	1	0	SCO1/SenC
Thioredoxin_10	PF17991.1	gi|408403757|ref|YP_006861740.1|	-	1.2e-15	58.3	0.0	1.8e-15	57.8	0.0	1.3	1	0	0	1	1	1	1	Thioredoxin	like	C-terminal	domain
AhpC-TSA	PF00578.21	gi|408403757|ref|YP_006861740.1|	-	2.2e-09	37.3	0.0	4.6e-09	36.3	0.0	1.5	2	0	0	2	2	2	1	AhpC/TSA	family
Redoxin	PF08534.10	gi|408403757|ref|YP_006861740.1|	-	1.9e-07	30.9	0.0	2.7e-07	30.4	0.0	1.2	1	0	0	1	1	1	1	Redoxin
Thioredoxin_8	PF13905.6	gi|408403757|ref|YP_006861740.1|	-	3.8e-06	27.1	0.3	8.8e-06	26.0	0.3	1.7	1	1	0	1	1	1	1	Thioredoxin-like
Thioredoxin_2	PF13098.6	gi|408403757|ref|YP_006861740.1|	-	0.0083	16.6	0.0	0.014	15.8	0.0	1.3	1	0	0	1	1	1	1	Thioredoxin-like	domain
WcbI	PF18588.1	gi|408403757|ref|YP_006861740.1|	-	0.065	12.8	0.1	0.16	11.6	0.1	1.6	1	1	0	1	1	1	0	Polysaccharide	biosynthesis	enzyme	WcbI
adh_short	PF00106.25	gi|408403758|ref|YP_006861741.1|	-	3.7e-65	219.0	1.2	4.3e-65	218.8	1.2	1.0	1	0	0	1	1	1	1	short	chain	dehydrogenase
adh_short_C2	PF13561.6	gi|408403758|ref|YP_006861741.1|	-	1.7e-48	165.2	0.1	2.1e-48	164.9	0.1	1.0	1	0	0	1	1	1	1	Enoyl-(Acyl	carrier	protein)	reductase
KR	PF08659.10	gi|408403758|ref|YP_006861741.1|	-	3.8e-17	62.8	0.2	7.4e-17	61.8	0.3	1.4	2	0	0	2	2	2	1	KR	domain
3HCDH_N	PF02737.18	gi|408403758|ref|YP_006861741.1|	-	0.00032	20.6	0.4	0.054	13.4	0.1	2.2	2	0	0	2	2	2	2	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
RmlD_sub_bind	PF04321.17	gi|408403758|ref|YP_006861741.1|	-	0.049	12.7	0.0	0.099	11.7	0.0	1.4	1	1	0	1	1	1	0	RmlD	substrate	binding	domain
Epimerase	PF01370.21	gi|408403758|ref|YP_006861741.1|	-	0.07	12.6	0.1	0.092	12.2	0.1	1.2	1	0	0	1	1	1	0	NAD	dependent	epimerase/dehydratase	family
DUF3253	PF11625.8	gi|408403758|ref|YP_006861741.1|	-	0.19	12.0	0.2	0.53	10.6	0.0	1.8	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3253)
PD40	PF07676.12	gi|408403759|ref|YP_006861742.1|	-	0.013	15.4	0.0	0.027	14.4	0.0	1.6	1	0	0	1	1	1	0	WD40-like	Beta	Propeller	Repeat
Herpes_teg_N	PF04843.12	gi|408403759|ref|YP_006861742.1|	-	0.037	13.7	0.0	0.037	13.7	0.0	1.1	1	0	0	1	1	1	0	Herpesvirus	tegument	protein,	N-terminal	conserved	region
DPPIV_N	PF00930.21	gi|408403759|ref|YP_006861742.1|	-	0.1	11.4	0.0	0.12	11.1	0.0	1.1	1	0	0	1	1	1	0	Dipeptidyl	peptidase	IV	(DPP	IV)	N-terminal	region
PD40	PF07676.12	gi|408403760|ref|YP_006861743.1|	-	2.1e-05	24.3	0.3	0.00084	19.2	0.0	2.3	2	0	0	2	2	2	1	WD40-like	Beta	Propeller	Repeat
DPPIV_N	PF00930.21	gi|408403760|ref|YP_006861743.1|	-	5.4e-05	22.1	0.0	6e-05	22.0	0.0	1.1	1	0	0	1	1	1	1	Dipeptidyl	peptidase	IV	(DPP	IV)	N-terminal	region
S-l_SbsC_C	PF18316.1	gi|408403760|ref|YP_006861743.1|	-	0.032	14.7	0.4	0.054	14.0	0.4	1.4	1	1	0	1	1	1	0	S-layer	protein	SbsC	C-terminal	domain
Big_11	PF18200.1	gi|408403760|ref|YP_006861743.1|	-	0.04	13.8	0.1	0.13	12.2	0.1	1.7	2	0	0	2	2	2	0	Bacterial	Ig-like	domain
DPPIV_N	PF00930.21	gi|408403761|ref|YP_006861744.1|	-	0.0049	15.7	0.0	0.028	13.2	0.0	1.8	1	1	1	2	2	2	1	Dipeptidyl	peptidase	IV	(DPP	IV)	N-terminal	region
Cupin_2	PF07883.11	gi|408403762|ref|YP_006861745.1|	-	2.6e-07	30.2	1.2	5.4e-06	26.0	1.2	2.1	1	1	0	1	1	1	1	Cupin	domain
Cupin_1	PF00190.22	gi|408403762|ref|YP_006861745.1|	-	3.3e-05	23.5	0.1	4.2e-05	23.2	0.1	1.1	1	0	0	1	1	1	1	Cupin
Auxin_BP	PF02041.16	gi|408403762|ref|YP_006861745.1|	-	0.00014	21.5	0.0	0.00017	21.3	0.0	1.2	1	0	0	1	1	1	1	Auxin	binding	protein
PmbA_TldD	PF01523.16	gi|408403763|ref|YP_006861746.1|	-	4.7e-59	200.5	4.1	4.7e-59	200.5	4.1	1.7	2	0	0	2	2	2	1	Putative	modulator	of	DNA	gyrase
PmbA_TldD	PF01523.16	gi|408403764|ref|YP_006861747.1|	-	4.3e-56	190.8	3.1	5.5e-56	190.5	3.1	1.1	1	0	0	1	1	1	1	Putative	modulator	of	DNA	gyrase
FAD_oxidored	PF12831.7	gi|408403765|ref|YP_006861748.1|	-	6.4e-17	62.0	0.2	1.1e-16	61.3	0.2	1.4	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
DAO	PF01266.24	gi|408403765|ref|YP_006861748.1|	-	6.3e-12	45.7	2.8	8.8e-08	32.1	1.7	2.2	1	1	1	2	2	2	2	FAD	dependent	oxidoreductase
FAD_binding_2	PF00890.24	gi|408403765|ref|YP_006861748.1|	-	4.4e-11	42.5	0.8	1.1e-09	37.8	0.3	2.1	2	0	0	2	2	2	1	FAD	binding	domain
FAD_binding_3	PF01494.19	gi|408403765|ref|YP_006861748.1|	-	4.6e-10	39.3	0.1	1.8e-09	37.3	0.2	1.7	1	1	0	1	1	1	1	FAD	binding	domain
NAD_binding_8	PF13450.6	gi|408403765|ref|YP_006861748.1|	-	5.3e-09	36.2	0.0	1.3e-08	35.0	0.0	1.6	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
HI0933_like	PF03486.14	gi|408403765|ref|YP_006861748.1|	-	7.3e-09	34.8	1.6	1.3e-08	34.0	0.2	1.9	2	0	0	2	2	2	1	HI0933-like	protein
Lycopene_cycl	PF05834.12	gi|408403765|ref|YP_006861748.1|	-	9.9e-09	34.7	0.1	2.7e-08	33.3	0.1	1.6	1	1	0	1	1	1	1	Lycopene	cyclase	protein
Trp_halogenase	PF04820.14	gi|408403765|ref|YP_006861748.1|	-	2.4e-08	33.3	0.4	0.002	17.1	0.0	2.5	1	1	1	2	2	2	2	Tryptophan	halogenase
Pyr_redox_2	PF07992.14	gi|408403765|ref|YP_006861748.1|	-	2.6e-08	33.4	0.3	4.3e-08	32.7	0.3	1.4	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
GIDA	PF01134.22	gi|408403765|ref|YP_006861748.1|	-	5.1e-07	29.1	1.4	6.9e-07	28.7	0.5	1.6	2	0	0	2	2	2	1	Glucose	inhibited	division	protein	A
Thi4	PF01946.17	gi|408403765|ref|YP_006861748.1|	-	1.7e-06	27.4	2.3	1.6e-05	24.3	0.1	2.5	2	1	0	2	2	2	1	Thi4	family
AlaDh_PNT_C	PF01262.21	gi|408403765|ref|YP_006861748.1|	-	4.2e-05	22.9	0.0	6.3e-05	22.4	0.0	1.3	1	0	0	1	1	1	1	Alanine	dehydrogenase/PNT,	C-terminal	domain
Pyr_redox_3	PF13738.6	gi|408403765|ref|YP_006861748.1|	-	9.5e-05	21.8	0.2	0.00017	21.0	0.2	1.5	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox	PF00070.27	gi|408403765|ref|YP_006861748.1|	-	0.0016	19.0	0.1	0.0066	17.0	0.0	2.0	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
3HCDH_N	PF02737.18	gi|408403765|ref|YP_006861748.1|	-	0.0017	18.2	0.1	0.004	17.1	0.1	1.6	1	0	0	1	1	1	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
NAD_binding_7	PF13241.6	gi|408403765|ref|YP_006861748.1|	-	0.024	15.1	0.1	0.047	14.1	0.1	1.6	1	1	0	1	1	1	0	Putative	NAD(P)-binding
TrkA_N	PF02254.18	gi|408403765|ref|YP_006861748.1|	-	0.061	13.6	0.0	0.14	12.5	0.0	1.6	1	0	0	1	1	1	0	TrkA-N	domain
Oxidored_q4	PF00507.19	gi|408403766|ref|YP_006861749.1|	-	1.8e-18	66.5	0.6	2.3e-18	66.1	0.6	1.1	1	0	0	1	1	1	1	NADH-ubiquinone/plastoquinone	oxidoreductase,	chain	3
DUF2244	PF10003.9	gi|408403766|ref|YP_006861749.1|	-	2.3	7.9	7.3	13	5.5	7.3	2.0	1	1	0	1	1	1	0	Integral	membrane	protein	(DUF2244)
Oxidored_q6	PF01058.22	gi|408403767|ref|YP_006861750.1|	-	1.6e-24	86.2	0.1	2.1e-24	85.8	0.1	1.2	1	0	0	1	1	1	1	NADH	ubiquinone	oxidoreductase,	20	Kd	subunit
Complex1_30kDa	PF00329.19	gi|408403768|ref|YP_006861751.1|	-	1.1e-33	116.4	0.0	1.4e-33	116.1	0.0	1.1	1	0	0	1	1	1	1	Respiratory-chain	NADH	dehydrogenase,	30	Kd	subunit
Complex1_49kDa	PF00346.19	gi|408403769|ref|YP_006861752.1|	-	4.9e-81	271.8	0.0	1.5e-59	201.3	0.0	2.1	1	1	1	2	2	2	2	Respiratory-chain	NADH	dehydrogenase,	49	Kd	subunit
NADHdh	PF00146.21	gi|408403770|ref|YP_006861753.1|	-	2.1e-93	312.9	22.9	2.1e-93	312.9	22.9	1.4	2	0	0	2	2	2	1	NADH	dehydrogenase
NDUF_B12	PF08122.12	gi|408403770|ref|YP_006861753.1|	-	0.058	13.5	0.3	0.058	13.5	0.3	2.2	2	0	0	2	2	2	0	NADH-ubiquinone	oxidoreductase	B12	subunit	family
Fer4	PF00037.27	gi|408403771|ref|YP_006861754.1|	-	4e-13	48.6	11.0	3.4e-09	36.1	1.8	2.3	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_10	PF13237.6	gi|408403771|ref|YP_006861754.1|	-	4.5e-09	36.3	18.4	8.9e-06	25.7	11.3	1.9	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_7	PF12838.7	gi|408403771|ref|YP_006861754.1|	-	6.1e-09	36.3	7.4	1.1e-08	35.5	7.4	1.4	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_21	PF14697.6	gi|408403771|ref|YP_006861754.1|	-	7.8e-08	32.3	20.8	2.5e-06	27.5	10.2	1.7	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_6	PF12837.7	gi|408403771|ref|YP_006861754.1|	-	3.9e-07	29.9	11.9	4.3e-05	23.4	1.7	2.4	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_8	PF13183.6	gi|408403771|ref|YP_006861754.1|	-	6.5e-07	29.7	1.7	0.0032	17.9	0.1	2.2	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_9	PF13187.6	gi|408403771|ref|YP_006861754.1|	-	1e-06	28.8	8.3	5.1e-06	26.6	9.2	1.6	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_4	PF12800.7	gi|408403771|ref|YP_006861754.1|	-	2.7e-06	27.4	7.7	0.012	16.1	0.8	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_2	PF12797.7	gi|408403771|ref|YP_006861754.1|	-	1.4e-05	24.9	10.9	0.0016	18.4	1.6	2.4	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_15	PF13459.6	gi|408403771|ref|YP_006861754.1|	-	0.00013	22.6	3.9	0.11	13.2	0.1	2.3	2	0	0	2	2	2	2	4Fe-4S	single	cluster	domain
Fer4_16	PF13484.6	gi|408403771|ref|YP_006861754.1|	-	0.0004	21.3	9.1	0.0065	17.4	0.2	2.3	1	1	2	3	3	3	2	4Fe-4S	double	cluster	binding	domain
Fer4_17	PF13534.6	gi|408403771|ref|YP_006861754.1|	-	0.0016	18.9	10.1	0.047	14.2	0.7	2.2	1	1	2	3	3	3	3	4Fe-4S	dicluster	domain
Fer4_3	PF12798.7	gi|408403771|ref|YP_006861754.1|	-	0.011	16.6	4.1	0.011	16.6	4.1	2.3	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_13	PF13370.6	gi|408403771|ref|YP_006861754.1|	-	0.019	15.5	8.5	0.13	12.9	0.2	2.3	2	0	0	2	2	2	0	4Fe-4S	single	cluster	domain	of	Ferredoxin	I
Fer4_18	PF13746.6	gi|408403771|ref|YP_006861754.1|	-	0.099	12.8	10.1	0.38	11.0	1.6	2.2	1	1	1	2	2	2	0	4Fe-4S	dicluster	domain
Fer4_22	PF17179.4	gi|408403771|ref|YP_006861754.1|	-	2.7	8.9	11.4	0.75	10.7	0.8	2.2	1	1	0	2	2	2	0	4Fe-4S	dicluster	domain
Oxidored_q3	PF00499.20	gi|408403772|ref|YP_006861755.1|	-	5.5e-24	84.5	17.7	7.3e-24	84.1	17.7	1.2	1	0	0	1	1	1	1	NADH-ubiquinone/plastoquinone	oxidoreductase	chain	6
DUF4040	PF13244.6	gi|408403772|ref|YP_006861755.1|	-	0.002	18.2	15.0	0.002	18.2	15.0	2.5	3	0	0	3	3	3	1	Domain	of	unknown	function	(DUF4040)
CD47	PF04549.14	gi|408403772|ref|YP_006861755.1|	-	1.1	9.4	12.6	0.13	12.5	4.0	2.9	2	1	1	3	3	3	0	CD47	transmembrane	region
TssN	PF17555.2	gi|408403772|ref|YP_006861755.1|	-	7.2	5.9	7.5	10	5.4	7.5	1.2	1	0	0	1	1	1	0	Type	VI	secretion	system,	TssN
DUF4181	PF13789.6	gi|408403772|ref|YP_006861755.1|	-	7.6	6.8	7.5	1.4	9.2	3.5	1.9	2	1	0	2	2	2	0	Domain	of	unknown	function	(DUF4181)
Oxidored_q2	PF00420.24	gi|408403773|ref|YP_006861756.1|	-	3.6e-23	81.2	6.7	4.6e-23	80.9	6.7	1.1	1	0	0	1	1	1	1	NADH-ubiquinone/plastoquinone	oxidoreductase	chain	4L
DUF4234	PF14018.6	gi|408403773|ref|YP_006861756.1|	-	0.016	15.4	2.2	0.075	13.2	1.7	1.9	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4234)
DUF5345	PF17280.2	gi|408403773|ref|YP_006861756.1|	-	0.086	12.8	0.3	0.086	12.8	0.3	1.7	2	0	0	2	2	2	0	Family	of	unknown	function	(DUF5345)
DUF5423	PF17461.2	gi|408403773|ref|YP_006861756.1|	-	1.6	7.5	2.8	1.3	7.8	1.9	1.3	1	1	0	1	1	1	0	Family	of	unknown	function	(DUF5423)
Tetraspanin	PF00335.20	gi|408403773|ref|YP_006861756.1|	-	1.9	8.1	4.3	8.9	5.9	0.7	2.0	2	0	0	2	2	2	0	Tetraspanin	family
DUF4418	PF14387.6	gi|408403773|ref|YP_006861756.1|	-	2.8	8.2	9.0	14	5.9	9.2	1.9	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4418)
Proton_antipo_M	PF00361.20	gi|408403774|ref|YP_006861757.1|	-	9.8e-63	212.1	27.7	9.8e-63	212.1	27.7	2.2	2	0	0	2	2	2	1	Proton-conducting	membrane	transporter
Proton_antipo_N	PF00662.20	gi|408403774|ref|YP_006861757.1|	-	0.00027	20.9	0.0	0.00027	20.9	0.0	3.3	4	0	0	4	4	4	1	NADH-Ubiquinone	oxidoreductase	(complex	I),	chain	5	N-terminus
DUF1515	PF07439.11	gi|408403774|ref|YP_006861757.1|	-	3.6	7.6	4.2	1.1	9.4	0.8	1.8	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1515)
Proton_antipo_M	PF00361.20	gi|408403775|ref|YP_006861758.1|	-	8.1e-61	205.8	29.4	2.4e-57	194.4	27.1	3.1	3	1	0	3	3	3	2	Proton-conducting	membrane	transporter
Proton_antipo_N	PF00662.20	gi|408403775|ref|YP_006861758.1|	-	9.6e-14	51.2	1.2	7.2e-13	48.4	1.2	2.7	1	0	0	1	1	1	1	NADH-Ubiquinone	oxidoreductase	(complex	I),	chain	5	N-terminus
Oxidored_q2	PF00420.24	gi|408403775|ref|YP_006861758.1|	-	0.062	12.9	0.1	0.062	12.9	0.1	3.9	4	1	0	4	4	4	0	NADH-ubiquinone/plastoquinone	oxidoreductase	chain	4L
B12D	PF06522.11	gi|408403775|ref|YP_006861758.1|	-	5.7	6.8	5.5	71	3.3	1.5	3.9	3	0	0	3	3	3	0	NADH-ubiquinone	reductase	complex	1	MLRQ	subunit
Proton_antipo_M	PF00361.20	gi|408403776|ref|YP_006861759.1|	-	1.9e-66	224.2	21.2	1.9e-66	224.2	21.2	2.4	2	0	0	2	2	2	1	Proton-conducting	membrane	transporter
polyprenyl_synt	PF00348.17	gi|408403777|ref|YP_006861760.1|	-	5.2e-52	176.4	0.0	7.4e-52	175.9	0.0	1.1	1	0	0	1	1	1	1	Polyprenyl	synthetase
TENA_THI-4	PF03070.16	gi|408403778|ref|YP_006861761.1|	-	6.9e-18	65.2	1.0	9.5e-18	64.8	1.0	1.2	1	0	0	1	1	1	1	TENA/THI-4/PQQC	family
Haem_oxygenas_2	PF14518.6	gi|408403778|ref|YP_006861761.1|	-	6.3e-15	55.4	0.3	9.4e-15	54.8	0.3	1.2	1	0	0	1	1	1	1	Iron-containing	redox	enzyme
DNA_pol_B	PF00136.21	gi|408403780|ref|YP_006861763.1|	-	1.4e-06	27.3	0.2	3e-06	26.2	0.2	1.4	2	0	0	2	2	2	1	DNA	polymerase	family	B
HTH_45	PF14947.6	gi|408403782|ref|YP_006861765.1|	-	4.9e-06	26.4	0.0	0.00022	21.1	0.0	2.2	1	1	1	2	2	2	1	Winged	helix-turn-helix
MarR	PF01047.22	gi|408403782|ref|YP_006861765.1|	-	0.001	19.0	0.0	0.0028	17.6	0.0	1.7	2	0	0	2	2	2	1	MarR	family
HTH_24	PF13412.6	gi|408403782|ref|YP_006861765.1|	-	0.033	13.7	0.0	0.097	12.2	0.0	1.8	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
BNR_2	PF13088.6	gi|408403784|ref|YP_006861767.1|	-	0.001	18.5	5.2	0.6	9.3	0.2	3.3	3	0	0	3	3	3	3	BNR	repeat-like	domain
BNR	PF02012.20	gi|408403784|ref|YP_006861767.1|	-	0.02	14.8	13.0	1.5	9.1	0.3	5.0	4	0	0	4	4	4	0	BNR/Asp-box	repeat
Response_reg	PF00072.24	gi|408403787|ref|YP_006861770.1|	-	9.7e-10	38.6	0.0	1.1e-09	38.5	0.0	1.0	1	0	0	1	1	1	1	Response	regulator	receiver	domain
DUF43	PF01861.16	gi|408403787|ref|YP_006861770.1|	-	0.084	12.1	0.1	0.091	12.0	0.1	1.0	1	0	0	1	1	1	0	Branched-chain	polyamine	synthase	A	C-terminal	domain
PdxJ	PF03740.13	gi|408403787|ref|YP_006861770.1|	-	0.22	10.6	0.0	0.23	10.5	0.0	1.0	1	0	0	1	1	1	0	Pyridoxal	phosphate	biosynthesis	protein	PdxJ
Spot_14	PF07084.12	gi|408403788|ref|YP_006861771.1|	-	0.038	14.1	1.2	1.7	8.8	0.0	2.2	2	0	0	2	2	2	0	Thyroid	hormone-inducible	hepatic	protein	Spot	14
CHDCT2	PF08074.11	gi|408403788|ref|YP_006861771.1|	-	0.04	14.1	3.5	0.062	13.5	2.7	1.7	1	1	0	1	1	1	0	CHDCT2	(NUC038)	domain
TFIIA	PF03153.13	gi|408403788|ref|YP_006861771.1|	-	0.32	10.9	10.0	0.37	10.7	10.0	1.1	1	0	0	1	1	1	0	Transcription	factor	IIA,	alpha/beta	subunit
Macoilin	PF09726.9	gi|408403788|ref|YP_006861771.1|	-	6.1	5.3	9.1	7.5	5.0	9.1	1.2	1	0	0	1	1	1	0	Macoilin	family
Copper-bind	PF00127.20	gi|408403790|ref|YP_006861773.1|	-	2.5e-12	47.1	0.4	1.4e-11	44.7	0.0	2.5	2	0	0	2	2	2	1	Copper	binding	proteins,	plastocyanin/azurin	family
Cupredoxin_1	PF13473.6	gi|408403790|ref|YP_006861773.1|	-	3e-06	27.3	0.0	1.3e-05	25.3	0.0	2.1	2	0	0	2	2	2	1	Cupredoxin-like	domain
MFS_1	PF07690.16	gi|408403791|ref|YP_006861774.1|	-	2e-31	109.2	60.9	5.2e-30	104.6	43.5	2.0	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
Sugar_tr	PF00083.24	gi|408403791|ref|YP_006861774.1|	-	6.6e-07	28.5	26.9	8.9e-06	24.8	12.6	2.6	3	0	0	3	3	3	2	Sugar	(and	other)	transporter
MFS_1_like	PF12832.7	gi|408403791|ref|YP_006861774.1|	-	0.00039	19.4	22.9	0.008	15.1	2.7	2.3	1	1	1	2	2	2	2	MFS_1	like	family
MFS_3	PF05977.13	gi|408403791|ref|YP_006861774.1|	-	0.033	12.6	24.7	0.075	11.4	24.6	1.6	1	1	1	2	2	2	0	Transmembrane	secretion	effector
DDDD	PF10161.9	gi|408403791|ref|YP_006861774.1|	-	0.28	10.9	0.8	1.3	8.9	0.8	2.2	1	0	0	1	1	1	0	Putative	mitochondrial	precursor	protein
Phage_holin_3_1	PF05106.12	gi|408403791|ref|YP_006861774.1|	-	0.73	10.3	8.8	0.063	13.7	1.9	2.7	3	0	0	3	3	3	0	Phage	holin	family	(Lysis	protein	S)
DUF4436	PF14494.6	gi|408403791|ref|YP_006861774.1|	-	3.5	6.8	6.1	4.2	6.6	2.1	2.1	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4436)
OATP	PF03137.20	gi|408403791|ref|YP_006861774.1|	-	4.7	5.4	13.6	0.012	13.9	2.7	2.2	2	1	0	2	2	2	0	Organic	Anion	Transporter	Polypeptide	(OATP)	family
IncD	PF17628.2	gi|408403791|ref|YP_006861774.1|	-	4.9	6.9	11.7	2.2	8.0	0.3	3.2	3	0	0	3	3	3	0	Inclusion	membrane	protein	D
Bac_export_2	PF01312.19	gi|408403791|ref|YP_006861774.1|	-	6.1	5.9	8.8	0.27	10.4	2.0	2.0	2	0	0	2	2	2	0	FlhB	HrpN	YscU	SpaS	Family
Methyltransf_11	PF08241.12	gi|408403793|ref|YP_006861776.1|	-	2.6e-11	44.0	0.0	3.3e-11	43.7	0.0	1.1	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.6	gi|408403793|ref|YP_006861776.1|	-	1.4e-06	28.9	0.0	1.7e-06	28.6	0.0	1.1	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.6	gi|408403793|ref|YP_006861776.1|	-	3.8e-06	26.8	0.0	4.6e-06	26.5	0.0	1.1	1	0	0	1	1	1	1	Methyltransferase	domain
MTS	PF05175.14	gi|408403793|ref|YP_006861776.1|	-	1.3e-05	24.8	0.0	2.4e-05	23.9	0.0	1.4	1	1	0	1	1	1	1	Methyltransferase	small	domain
Methyltransf_12	PF08242.12	gi|408403793|ref|YP_006861776.1|	-	2.3e-05	25.1	0.0	3e-05	24.7	0.0	1.1	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.6	gi|408403793|ref|YP_006861776.1|	-	0.0015	18.4	0.0	0.0019	18.1	0.0	1.1	1	0	0	1	1	1	1	Methyltransferase	domain
CMAS	PF02353.20	gi|408403793|ref|YP_006861776.1|	-	0.0029	16.9	0.0	0.0039	16.5	0.0	1.2	1	0	0	1	1	1	1	Mycolic	acid	cyclopropane	synthetase
Ubie_methyltran	PF01209.18	gi|408403793|ref|YP_006861776.1|	-	0.1	11.9	0.0	0.12	11.7	0.0	1.1	1	0	0	1	1	1	0	ubiE/COQ5	methyltransferase	family
Isochorismatase	PF00857.20	gi|408403794|ref|YP_006861777.1|	-	1.4e-42	145.8	0.0	1.7e-42	145.6	0.0	1.1	1	0	0	1	1	1	1	Isochorismatase	family
SBF	PF01758.16	gi|408403795|ref|YP_006861778.1|	-	9e-13	48.3	16.7	9e-13	48.3	16.7	2.0	2	0	0	2	2	2	1	Sodium	Bile	acid	symporter	family
Glycos_transf_2	PF00535.26	gi|408403796|ref|YP_006861779.1|	-	4.2e-14	52.7	0.0	5.7e-14	52.3	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_tranf_2_3	PF13641.6	gi|408403796|ref|YP_006861779.1|	-	0.0002	21.3	0.0	0.00024	21.1	0.0	1.2	1	0	0	1	1	1	1	Glycosyltransferase	like	family	2
Glyco_tranf_2_2	PF10111.9	gi|408403796|ref|YP_006861779.1|	-	0.04	13.4	0.2	0.073	12.5	0.0	1.4	2	0	0	2	2	2	0	Glycosyltransferase	like	family	2
Glyco_tranf_2_4	PF13704.6	gi|408403796|ref|YP_006861779.1|	-	0.15	12.6	0.0	0.29	11.7	0.0	1.5	1	0	0	1	1	1	0	Glycosyl	transferase	family	2
Glycos_transf_1	PF00534.20	gi|408403797|ref|YP_006861780.1|	-	1.2e-24	86.8	0.1	2.1e-24	86.0	0.1	1.3	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.6	gi|408403797|ref|YP_006861780.1|	-	2.6e-12	47.3	0.0	7.9e-12	45.8	0.0	1.7	2	0	0	2	2	2	1	Glycosyl	transferases	group	1
Glyco_transf_4	PF13439.6	gi|408403797|ref|YP_006861780.1|	-	4.9e-06	26.7	0.0	1.3e-05	25.3	0.0	1.8	1	1	0	1	1	1	1	Glycosyltransferase	Family	4
Exostosin	PF03016.15	gi|408403797|ref|YP_006861780.1|	-	0.012	14.8	0.0	0.02	14.1	0.0	1.3	1	0	0	1	1	1	0	Exostosin	family
DUF826	PF05696.11	gi|408403797|ref|YP_006861780.1|	-	0.11	12.5	0.3	0.32	11.1	0.3	1.7	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF826)
ALG11_N	PF15924.5	gi|408403797|ref|YP_006861780.1|	-	0.13	12.2	0.0	4	7.4	0.1	2.3	2	0	0	2	2	2	0	ALG11	mannosyltransferase	N-terminus
Nudix_N_2	PF14803.6	gi|408403798|ref|YP_006861781.1|	-	0.011	15.7	0.2	0.046	13.6	0.0	2.1	2	0	0	2	2	2	0	Nudix	N-terminal
DUF608	PF04685.13	gi|408403799|ref|YP_006861782.1|	-	1.7e-06	27.5	0.1	2.9e-06	26.7	0.1	1.3	1	0	0	1	1	1	1	Glycosyl-hydrolase	family	116,	catalytic	region
GDE_C	PF06202.14	gi|408403799|ref|YP_006861782.1|	-	4e-05	22.7	0.6	0.16	10.9	0.0	2.3	2	0	0	2	2	2	2	Amylo-alpha-1,6-glucosidase
Trehalase	PF01204.18	gi|408403799|ref|YP_006861782.1|	-	0.006	15.5	0.1	0.0091	14.9	0.1	1.3	1	0	0	1	1	1	1	Trehalase
AGS_C	PF18134.1	gi|408403799|ref|YP_006861782.1|	-	0.027	14.5	0.1	0.049	13.6	0.1	1.3	1	0	0	1	1	1	0	Adenylyl/Guanylyl	and	SMODS	C-terminal	sensor	domain
Peptidase_A25	PF03418.14	gi|408403799|ref|YP_006861782.1|	-	0.068	12.1	0.0	0.14	11.1	0.0	1.5	1	0	0	1	1	1	0	Germination	protease
POTRA_TamA_1	PF17243.2	gi|408403799|ref|YP_006861782.1|	-	0.093	12.8	0.0	0.29	11.2	0.0	1.8	1	0	0	1	1	1	0	POTRA	domain	TamA	domain	1
PQ-loop	PF04193.14	gi|408403800|ref|YP_006861783.1|	-	1.3e-12	47.3	0.6	1.3e-12	47.3	0.6	1.6	1	1	1	2	2	2	1	PQ	loop	repeat
MtN3_slv	PF03083.16	gi|408403800|ref|YP_006861783.1|	-	4.1e-10	39.6	1.2	4.7e-10	39.4	1.2	1.1	1	0	0	1	1	1	1	Sugar	efflux	transporter	for	intercellular	exchange
LAB_N	PF07578.11	gi|408403800|ref|YP_006861783.1|	-	0.0031	17.5	0.6	0.0047	17.0	0.6	1.3	1	1	0	1	1	1	1	Lipid	A	Biosynthesis	N-terminal	domain
RseC_MucC	PF04246.12	gi|408403800|ref|YP_006861783.1|	-	0.023	14.6	0.5	0.029	14.3	0.3	1.3	1	1	0	1	1	1	0	Positive	regulator	of	sigma(E),	RseC/MucC
Guanylate_cyc	PF00211.20	gi|408403802|ref|YP_006861785.1|	-	1.6e-13	50.7	0.0	2.2e-13	50.2	0.0	1.2	1	0	0	1	1	1	1	Adenylate	and	Guanylate	cyclase	catalytic	domain
SHOCT	PF09851.9	gi|408403803|ref|YP_006861786.1|	-	1.4e-06	27.8	0.1	3.4e-06	26.6	0.1	1.7	1	0	0	1	1	1	1	Short	C-terminal	domain
SWIM	PF04434.17	gi|408403804|ref|YP_006861787.1|	-	6.7e-08	32.1	0.1	9.1e-08	31.6	0.1	1.2	1	0	0	1	1	1	1	SWIM	zinc	finger
DUF2024	PF09630.10	gi|408403805|ref|YP_006861788.1|	-	1.9e-11	43.7	0.4	1.1e-10	41.2	0.4	1.9	1	1	0	1	1	1	1	Domain	of	unknown	function	(DUF2024)
DUF3023	PF11224.8	gi|408403806|ref|YP_006861789.1|	-	0.15	11.9	0.0	0.17	11.7	0.0	1.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3023)
PAC2	PF09754.9	gi|408403809|ref|YP_006861792.1|	-	3.1e-45	154.8	0.0	3.6e-45	154.6	0.0	1.0	1	0	0	1	1	1	1	PAC2	family
CENP-H	PF05837.12	gi|408403809|ref|YP_006861792.1|	-	1.5	9.2	5.5	1.6	9.2	0.8	2.2	2	0	0	2	2	2	0	Centromere	protein	H	(CENP-H)
Oxidored_q2	PF00420.24	gi|408403811|ref|YP_006861794.1|	-	0.15	11.7	4.1	0.29	10.8	4.1	1.4	1	1	0	1	1	1	0	NADH-ubiquinone/plastoquinone	oxidoreductase	chain	4L
Gram_pos_anchor	PF00746.21	gi|408403811|ref|YP_006861794.1|	-	0.35	10.8	8.5	1.2	9.2	0.3	2.6	2	1	1	3	3	3	0	LPXTG	cell	wall	anchor	motif
DUF4064	PF13273.6	gi|408403811|ref|YP_006861794.1|	-	0.35	11.2	8.5	0.72	10.2	7.9	1.7	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF4064)
DUF2207	PF09972.9	gi|408403811|ref|YP_006861794.1|	-	0.37	9.5	1.1	0.44	9.3	1.1	1.0	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2207)
DUF3188	PF11384.8	gi|408403811|ref|YP_006861794.1|	-	0.46	10.2	0.1	0.46	10.2	0.1	2.7	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF3188)
Nitroreductase	PF00881.24	gi|408403813|ref|YP_006861796.1|	-	3.3e-27	95.6	0.4	3.8e-13	49.9	0.2	2.1	1	1	1	2	2	2	2	Nitroreductase	family
TM1586_NiRdase	PF14512.6	gi|408403813|ref|YP_006861796.1|	-	2.8e-07	30.3	0.0	7.8e-06	25.6	0.0	2.2	1	1	0	1	1	1	1	Putative	TM	nitroreductase
Multi_ubiq	PF14452.6	gi|408403815|ref|YP_006861798.1|	-	3.8e-10	39.9	0.1	4.5e-10	39.6	0.1	1.1	1	0	0	1	1	1	1	Multiubiquitin
DLH	PF01738.18	gi|408403817|ref|YP_006861800.1|	-	4.7e-11	42.6	0.0	7.5e-11	42.0	0.0	1.2	1	0	0	1	1	1	1	Dienelactone	hydrolase	family
Hydrolase_4	PF12146.8	gi|408403817|ref|YP_006861800.1|	-	7.2e-10	38.5	0.1	0.0012	18.2	0.1	2.4	2	1	0	2	2	2	2	Serine	aminopeptidase,	S33
Abhydrolase_1	PF00561.20	gi|408403817|ref|YP_006861800.1|	-	2.7e-07	30.5	0.0	0.00032	20.4	0.0	2.3	1	1	1	2	2	2	2	alpha/beta	hydrolase	fold
Peptidase_S15	PF02129.18	gi|408403817|ref|YP_006861800.1|	-	4.7e-06	26.4	0.9	0.017	14.7	0.4	2.1	1	1	1	2	2	2	2	X-Pro	dipeptidyl-peptidase	(S15	family)
Peptidase_S9	PF00326.21	gi|408403817|ref|YP_006861800.1|	-	0.00015	21.3	0.9	0.12	11.8	0.6	2.6	2	1	1	3	3	3	2	Prolyl	oligopeptidase	family
BAAT_C	PF08840.11	gi|408403817|ref|YP_006861800.1|	-	0.00025	21.0	0.2	0.029	14.3	0.1	2.2	1	1	1	2	2	2	1	BAAT	/	Acyl-CoA	thioester	hydrolase	C	terminal
Abhydrolase_6	PF12697.7	gi|408403817|ref|YP_006861800.1|	-	0.0019	18.8	0.2	0.77	10.3	0.1	2.1	1	1	1	2	2	2	2	Alpha/beta	hydrolase	family
Abhydrolase_2	PF02230.16	gi|408403817|ref|YP_006861800.1|	-	0.12	12.2	0.0	5.1	6.8	0.0	2.2	2	0	0	2	2	2	0	Phospholipase/Carboxylesterase
Abhydrolase_3	PF07859.13	gi|408403817|ref|YP_006861800.1|	-	0.13	12.1	1.5	5.1	6.9	1.8	2.4	1	1	1	2	2	2	0	alpha/beta	hydrolase	fold
PAF-AH_p_II	PF03403.13	gi|408403817|ref|YP_006861800.1|	-	0.15	10.6	0.0	1.6	7.1	0.0	2.0	2	0	0	2	2	2	0	Platelet-activating	factor	acetylhydrolase,	isoform	II
Erythro_esteras	PF05139.14	gi|408403818|ref|YP_006861801.1|	-	2.4e-34	119.7	0.1	2.9e-34	119.4	0.1	1.1	1	0	0	1	1	1	1	Erythromycin	esterase
Erythro_esteras	PF05139.14	gi|408403819|ref|YP_006861802.1|	-	8.8e-57	193.5	0.1	9.9e-57	193.3	0.1	1.0	1	0	0	1	1	1	1	Erythromycin	esterase
Oxidored_q6	PF01058.22	gi|408403820|ref|YP_006861803.1|	-	1e-23	83.6	0.0	1.4e-23	83.1	0.0	1.2	1	0	0	1	1	1	1	NADH	ubiquinone	oxidoreductase,	20	Kd	subunit
Complex1_49kDa	PF00346.19	gi|408403821|ref|YP_006861804.1|	-	1.9e-79	266.6	0.0	2.1e-60	204.1	0.0	2.1	1	1	1	2	2	2	2	Respiratory-chain	NADH	dehydrogenase,	49	Kd	subunit
NiFeSe_Hases	PF00374.19	gi|408403821|ref|YP_006861804.1|	-	0.00019	20.5	0.0	0.16	10.8	0.0	2.1	2	0	0	2	2	2	2	Nickel-dependent	hydrogenase
Bac_luciferase	PF00296.20	gi|408403822|ref|YP_006861805.1|	-	7.6e-26	91.3	0.6	8.5e-26	91.1	0.6	1.0	1	0	0	1	1	1	1	Luciferase-like	monooxygenase
DUF4366	PF14283.6	gi|408403823|ref|YP_006861806.1|	-	0.033	14.3	1.3	0.2	11.7	0.0	2.1	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4366)
DUF5305	PF17231.2	gi|408403823|ref|YP_006861806.1|	-	0.22	10.9	0.0	0.93	8.9	0.0	1.8	2	0	0	2	2	2	0	Family	of	unknown	function	(DUF5305)
XTBD	PF11952.8	gi|408403825|ref|YP_006861808.1|	-	0.025	14.3	0.2	0.067	13.0	0.2	1.8	1	0	0	1	1	1	0	XRN-Two	Binding	Domain,	XTBD
Lipoprotein_2	PF00921.17	gi|408403825|ref|YP_006861808.1|	-	0.032	13.8	0.9	0.06	12.9	0.9	1.4	1	0	0	1	1	1	0	Borrelia	lipoprotein
ApoLp-III	PF07464.11	gi|408403825|ref|YP_006861808.1|	-	0.063	13.4	6.8	1	9.5	0.2	2.5	2	1	0	2	2	2	0	Apolipophorin-III	precursor	(apoLp-III)
Apolipoprotein	PF01442.18	gi|408403825|ref|YP_006861808.1|	-	0.094	12.6	15.0	0.2	11.5	8.5	2.2	2	0	0	2	2	2	0	Apolipoprotein	A1/A4/E	domain
Ribosomal_L20	PF00453.18	gi|408403825|ref|YP_006861808.1|	-	0.13	12.3	12.0	1.3	9.1	2.3	2.2	2	0	0	2	2	2	0	Ribosomal	protein	L20
Phasin_2	PF09361.10	gi|408403825|ref|YP_006861808.1|	-	0.16	12.3	12.3	0.74	10.1	3.6	2.6	2	1	0	2	2	2	0	Phasin	protein
Pepsin-I3	PF06394.13	gi|408403825|ref|YP_006861808.1|	-	0.42	10.8	2.4	0.57	10.4	0.9	2.1	2	1	0	2	2	2	0	Pepsin	inhibitor-3-like	repeated	domain
DUF416	PF04222.12	gi|408403825|ref|YP_006861808.1|	-	0.92	8.9	6.2	3.3	7.1	0.3	2.4	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF416)
HisKA_3	PF07730.13	gi|408403825|ref|YP_006861808.1|	-	1.5	9.4	10.0	4.5	7.9	3.6	3.2	2	2	1	3	3	3	0	Histidine	kinase
YtxH	PF12732.7	gi|408403825|ref|YP_006861808.1|	-	6.2	7.4	8.1	5.8	7.5	2.6	2.9	2	2	0	2	2	2	0	YtxH-like	protein
Mobilization_B	PF17511.2	gi|408403825|ref|YP_006861808.1|	-	8.9	6.7	8.9	2.9	8.2	5.7	1.7	1	1	0	1	1	1	0	Mobilization	protein	B
DUF705	PF05152.12	gi|408403826|ref|YP_006861809.1|	-	0.077	12.5	0.0	0.096	12.1	0.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF705)
Peptidase_M23	PF01551.22	gi|408403827|ref|YP_006861810.1|	-	3.5e-20	72.0	0.1	5.7e-20	71.3	0.1	1.3	1	0	0	1	1	1	1	Peptidase	family	M23
RF-1	PF00472.20	gi|408403828|ref|YP_006861811.1|	-	0.021	14.8	0.7	0.036	14.0	0.0	1.8	2	1	0	2	2	2	0	RF-1	domain
AAA_9	PF12781.7	gi|408403829|ref|YP_006861812.1|	-	0.084	12.0	0.0	0.12	11.5	0.0	1.4	1	1	0	1	1	1	0	ATP-binding	dynein	motor	region
DUF2171	PF09939.9	gi|408403830|ref|YP_006861813.1|	-	0.00063	20.0	0.0	0.001	19.3	0.0	1.4	1	1	0	1	1	1	1	Uncharacterized	protein	conserved	in	bacteria	(DUF2171)
PRC	PF05239.16	gi|408403830|ref|YP_006861813.1|	-	0.0025	17.9	0.4	0.0041	17.2	0.4	1.5	1	1	0	1	1	1	1	PRC-barrel	domain
DUF2795	PF11387.8	gi|408403832|ref|YP_006861815.1|	-	0.0014	18.8	0.7	0.003	17.7	0.1	2.0	2	1	0	2	2	2	1	Protein	of	unknown	function	(DUF2795)
DUF2795	PF11387.8	gi|408403833|ref|YP_006861816.1|	-	2.3e-05	24.5	0.1	3.6e-05	23.9	0.1	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF2795)
zf-C2H2_6	PF13912.6	gi|408403833|ref|YP_006861816.1|	-	0.00013	21.8	0.2	0.00018	21.4	0.2	1.2	1	0	0	1	1	1	1	C2H2-type	zinc	finger
zf-C2H2	PF00096.26	gi|408403833|ref|YP_006861816.1|	-	0.0016	18.8	0.2	0.0025	18.2	0.2	1.3	1	0	0	1	1	1	1	Zinc	finger,	C2H2	type
zf-C2H2_2	PF12756.7	gi|408403833|ref|YP_006861816.1|	-	0.0038	17.5	0.0	0.0068	16.7	0.0	1.4	1	0	0	1	1	1	1	C2H2	type	zinc-finger	(2	copies)
Actin_micro	PF17003.5	gi|408403833|ref|YP_006861816.1|	-	0.0065	15.7	0.1	0.0075	15.5	0.1	1.1	1	0	0	1	1	1	1	Putative	actin-like	family
zf_C2H2_ZHX	PF18387.1	gi|408403833|ref|YP_006861816.1|	-	0.0075	15.9	0.2	0.012	15.2	0.2	1.3	1	0	0	1	1	1	1	Zinc-fingers	and	homeoboxes	C2H2	finger	domain
zf-C2H2_4	PF13894.6	gi|408403833|ref|YP_006861816.1|	-	0.017	15.9	0.0	0.031	15.1	0.0	1.4	1	0	0	1	1	1	0	C2H2-type	zinc	finger
DRE2_N	PF16803.5	gi|408403833|ref|YP_006861816.1|	-	0.035	14.3	0.1	0.045	14.0	0.1	1.1	1	0	0	1	1	1	0	Fe-S	cluster	assembly	protein	DRE2	N-terminus
zf-H2C2_2	PF13465.6	gi|408403833|ref|YP_006861816.1|	-	0.05	14.1	1.1	5.7	7.5	0.1	2.2	2	0	0	2	2	2	0	Zinc-finger	double	domain
DUF3449	PF11931.8	gi|408403833|ref|YP_006861816.1|	-	0.075	12.8	0.0	0.082	12.7	0.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3449)
zf-Di19	PF05605.12	gi|408403833|ref|YP_006861816.1|	-	0.11	12.8	0.1	0.2	12.0	0.1	1.4	1	0	0	1	1	1	0	Drought	induced	19	protein	(Di19),	zinc-binding
zf-C2H2_3rep	PF18868.1	gi|408403833|ref|YP_006861816.1|	-	0.13	12.9	1.3	0.4	11.3	0.7	1.8	1	1	1	2	2	2	0	Zinc	finger	C2H2-type,	3	repeats
zf-BED	PF02892.15	gi|408403833|ref|YP_006861816.1|	-	0.15	12.1	0.1	0.51	10.4	0.1	1.8	2	0	0	2	2	2	0	BED	zinc	finger
zf-met2	PF12907.7	gi|408403833|ref|YP_006861816.1|	-	0.17	12.0	1.7	0.39	10.9	1.7	1.6	1	1	0	1	1	1	0	Zinc-binding
DOR	PF14839.6	gi|408403834|ref|YP_006861817.1|	-	0.063	13.2	1.1	0.076	13.0	1.1	1.2	1	0	0	1	1	1	0	DOR	family
IFS	PF16718.5	gi|408403835|ref|YP_006861818.1|	-	0.15	12.1	0.1	0.23	11.6	0.1	1.3	1	0	0	1	1	1	0	Immunity	factor	for	SPN
Usp	PF00582.26	gi|408403837|ref|YP_006861820.1|	-	2.8e-33	115.4	0.3	3.3e-33	115.2	0.3	1.0	1	0	0	1	1	1	1	Universal	stress	protein	family
ADH_zinc_N	PF00107.26	gi|408403837|ref|YP_006861820.1|	-	0.0055	16.7	0.3	0.008	16.2	0.3	1.4	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
AP_endonuc_2	PF01261.24	gi|408403837|ref|YP_006861820.1|	-	0.0069	15.9	0.0	0.012	15.1	0.0	1.4	1	1	0	1	1	1	1	Xylose	isomerase-like	TIM	barrel
zf-C2H2	PF00096.26	gi|408403838|ref|YP_006861821.1|	-	0.00012	22.3	0.3	0.00016	22.0	0.3	1.2	1	0	0	1	1	1	1	Zinc	finger,	C2H2	type
zf-C2H2_6	PF13912.6	gi|408403838|ref|YP_006861821.1|	-	0.00059	19.8	0.0	0.00071	19.5	0.0	1.1	1	0	0	1	1	1	1	C2H2-type	zinc	finger
zf-C2H2_4	PF13894.6	gi|408403838|ref|YP_006861821.1|	-	0.0012	19.6	0.2	0.0015	19.2	0.2	1.2	1	0	0	1	1	1	1	C2H2-type	zinc	finger
YhfH	PF14149.6	gi|408403838|ref|YP_006861821.1|	-	0.0065	16.4	0.1	0.0085	16.1	0.1	1.2	1	0	0	1	1	1	1	YhfH-like	protein
zf-C2H2_jaz	PF12171.8	gi|408403838|ref|YP_006861821.1|	-	0.021	15.1	0.3	0.028	14.7	0.3	1.2	1	0	0	1	1	1	0	Zinc-finger	double-stranded	RNA-binding
zf-met	PF12874.7	gi|408403838|ref|YP_006861821.1|	-	0.038	14.4	0.1	0.053	13.9	0.1	1.3	1	0	0	1	1	1	0	Zinc-finger	of	C2H2	type
zf-C2HC_2	PF13913.6	gi|408403838|ref|YP_006861821.1|	-	0.057	13.3	0.2	0.073	13.0	0.2	1.2	1	0	0	1	1	1	0	zinc-finger	of	a	C2HC-type
zf-C2H2_12	PF18658.1	gi|408403838|ref|YP_006861821.1|	-	0.084	12.5	0.0	0.089	12.4	0.0	1.1	1	0	0	1	1	1	0	Zinc-finger	C2H2-type
zf-H2C2_2	PF13465.6	gi|408403838|ref|YP_006861821.1|	-	0.14	12.6	0.3	0.14	12.6	0.3	1.7	2	0	0	2	2	2	0	Zinc-finger	double	domain
DUF4443	PF14544.6	gi|408403839|ref|YP_006861822.1|	-	8.5e-05	22.7	0.0	0.00015	21.9	0.0	1.3	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4443)
DUF4093	PF13331.6	gi|408403839|ref|YP_006861822.1|	-	0.0083	16.5	0.0	0.023	15.1	0.0	1.7	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4093)
CbtB	PF09489.10	gi|408403840|ref|YP_006861823.1|	-	1.4e-13	50.7	0.2	1.8e-13	50.3	0.2	1.2	1	0	0	1	1	1	1	Probable	cobalt	transporter	subunit	(CbtB)
CbtA	PF09490.10	gi|408403841|ref|YP_006861824.1|	-	1.7e-53	181.9	10.7	2e-53	181.7	10.7	1.0	1	0	0	1	1	1	1	Probable	cobalt	transporter	subunit	(CbtA)
DUF1772	PF08592.11	gi|408403841|ref|YP_006861824.1|	-	0.35	11.2	6.2	0.58	10.5	3.6	2.2	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF1772)
DUF4131	PF13567.6	gi|408403841|ref|YP_006861824.1|	-	8.7	6.0	6.9	10	5.8	2.9	2.5	2	1	0	2	2	2	0	Domain	of	unknown	function	(DUF4131)
Intimin_C	PF07979.11	gi|408403842|ref|YP_006861825.1|	-	0.11	12.9	0.2	0.18	12.3	0.2	1.3	1	0	0	1	1	1	0	Intimin	C-type	lectin	domain
Herpes_IE2_3	PF03361.14	gi|408403842|ref|YP_006861825.1|	-	0.13	12.2	0.4	0.16	11.9	0.4	1.2	1	0	0	1	1	1	0	Herpes	virus	intermediate/early	protein	2/3
Collagen_mid	PF15984.5	gi|408403842|ref|YP_006861825.1|	-	0.13	12.0	0.4	0.35	10.6	0.2	1.6	1	1	0	1	1	1	0	Bacterial	collagen,	middle	region
HisKA_3	PF07730.13	gi|408403842|ref|YP_006861825.1|	-	0.14	12.7	8.6	0.34	11.4	0.4	2.8	1	1	1	2	2	2	0	Histidine	kinase
DUF4400	PF14348.6	gi|408403842|ref|YP_006861825.1|	-	0.2	11.1	2.2	0.26	10.8	2.2	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4400)
V_ATPase_I	PF01496.19	gi|408403842|ref|YP_006861825.1|	-	0.23	9.4	0.3	0.26	9.2	0.3	1.2	1	0	0	1	1	1	0	V-type	ATPase	116kDa	subunit	family
ApoLp-III	PF07464.11	gi|408403842|ref|YP_006861825.1|	-	0.23	11.5	5.8	0.55	10.3	5.8	1.7	1	1	0	1	1	1	0	Apolipophorin-III	precursor	(apoLp-III)
DUF948	PF06103.11	gi|408403842|ref|YP_006861825.1|	-	0.35	11.1	6.1	6.5	7.1	6.1	2.2	1	1	0	1	1	1	0	Bacterial	protein	of	unknown	function	(DUF948)
TMP_2	PF06791.13	gi|408403842|ref|YP_006861825.1|	-	0.58	9.8	8.6	0.9	9.2	8.6	1.4	1	0	0	1	1	1	0	Prophage	tail	length	tape	measure	protein
DUF4266	PF14086.6	gi|408403842|ref|YP_006861825.1|	-	0.86	10.6	2.3	4.3	8.4	0.2	2.7	2	1	2	4	4	4	0	Domain	of	unknown	function	(DUF4266)
OspD	PF03207.13	gi|408403842|ref|YP_006861825.1|	-	2.8	7.2	8.8	11	5.3	8.8	1.8	1	1	0	1	1	1	0	Borrelia	outer	surface	protein	D	(OspD)
REF	PF05755.12	gi|408403842|ref|YP_006861825.1|	-	3.7	7.3	9.0	4.3	7.1	7.5	1.7	1	1	1	2	2	2	0	Rubber	elongation	factor	protein	(REF)
DUF948	PF06103.11	gi|408403843|ref|YP_006861826.1|	-	5.8	7.3	8.7	4.1	7.7	1.4	3.3	2	0	0	2	2	2	0	Bacterial	protein	of	unknown	function	(DUF948)
Polyketide_cyc2	PF10604.9	gi|408403844|ref|YP_006861827.1|	-	2.7e-13	50.4	0.2	3e-13	50.3	0.2	1.0	1	0	0	1	1	1	1	Polyketide	cyclase	/	dehydrase	and	lipid	transport
Polyketide_cyc	PF03364.20	gi|408403844|ref|YP_006861827.1|	-	7.4e-08	32.7	0.0	1.3e-07	31.9	0.0	1.4	1	1	0	1	1	1	1	Polyketide	cyclase	/	dehydrase	and	lipid	transport
AHSA1	PF08327.11	gi|408403844|ref|YP_006861827.1|	-	0.0065	16.7	0.0	0.0097	16.1	0.0	1.3	1	0	0	1	1	1	1	Activator	of	Hsp90	ATPase	homolog	1-like	protein
DUF2505	PF10698.9	gi|408403844|ref|YP_006861827.1|	-	0.013	15.6	0.8	0.59	10.2	0.2	2.1	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF2505)
Glycos_transf_2	PF00535.26	gi|408403845|ref|YP_006861828.1|	-	1.3e-26	93.4	0.0	1.9e-26	92.9	0.0	1.2	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_tranf_2_3	PF13641.6	gi|408403845|ref|YP_006861828.1|	-	3.2e-21	76.3	0.0	4.7e-21	75.7	0.0	1.2	1	0	0	1	1	1	1	Glycosyltransferase	like	family	2
Glyco_transf_21	PF13506.6	gi|408403845|ref|YP_006861828.1|	-	2.5e-09	36.9	0.0	5.3e-09	35.8	0.0	1.5	1	0	0	1	1	1	1	Glycosyl	transferase	family	21
Glyco_tranf_2_2	PF10111.9	gi|408403845|ref|YP_006861828.1|	-	2.6e-07	30.4	0.0	3.7e-07	29.9	0.0	1.1	1	0	0	1	1	1	1	Glycosyltransferase	like	family	2
Glyco_tranf_2_4	PF13704.6	gi|408403845|ref|YP_006861828.1|	-	0.0028	18.2	0.0	0.0049	17.3	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
HTH_45	PF14947.6	gi|408403846|ref|YP_006861829.1|	-	3e-20	72.0	1.3	3.5e-20	71.8	1.3	1.1	1	0	0	1	1	1	1	Winged	helix-turn-helix
DUF4364	PF14277.6	gi|408403846|ref|YP_006861829.1|	-	3.3e-06	26.9	0.5	4.1e-06	26.6	0.5	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4364)
HTH_27	PF13463.6	gi|408403846|ref|YP_006861829.1|	-	0.0024	18.3	0.0	0.0031	18.0	0.0	1.3	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
Penicillinase_R	PF03965.16	gi|408403846|ref|YP_006861829.1|	-	0.071	13.5	0.1	0.081	13.3	0.1	1.3	1	0	0	1	1	1	0	Penicillinase	repressor
DUF771	PF05595.11	gi|408403846|ref|YP_006861829.1|	-	0.071	13.1	0.0	0.086	12.8	0.0	1.3	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF771)
GerE	PF00196.19	gi|408403846|ref|YP_006861829.1|	-	0.1	12.2	0.1	0.15	11.6	0.1	1.2	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	luxR	family
Trypsin_2	PF13365.6	gi|408403847|ref|YP_006861830.1|	-	1.4e-35	123.4	0.8	2.7e-35	122.5	0.8	1.5	1	0	0	1	1	1	1	Trypsin-like	peptidase	domain
PDZ_2	PF13180.6	gi|408403847|ref|YP_006861830.1|	-	2.4e-13	50.2	0.2	7.2e-13	48.7	0.2	1.9	1	0	0	1	1	1	1	PDZ	domain
Trypsin	PF00089.26	gi|408403847|ref|YP_006861830.1|	-	3e-11	43.5	0.0	6.9e-11	42.4	0.0	1.6	1	1	0	1	1	1	1	Trypsin
PDZ_6	PF17820.1	gi|408403847|ref|YP_006861830.1|	-	2.3e-05	24.2	8.0	0.0089	15.9	1.4	2.5	1	1	1	2	2	2	2	PDZ	domain
PDZ	PF00595.24	gi|408403847|ref|YP_006861830.1|	-	2.4e-05	24.6	2.1	0.075	13.4	0.0	3.1	3	0	0	3	3	3	2	PDZ	domain
Peptidase_S29	PF02907.15	gi|408403847|ref|YP_006861830.1|	-	0.0047	16.7	0.1	0.0082	15.9	0.1	1.4	1	0	0	1	1	1	1	Hepatitis	C	virus	NS3	protease
Peptidase_S7	PF00949.21	gi|408403847|ref|YP_006861830.1|	-	0.028	14.2	0.0	0.054	13.3	0.0	1.4	1	0	0	1	1	1	0	Peptidase	S7,	Flavivirus	NS3	serine	protease
Peptidase_S46	PF10459.9	gi|408403847|ref|YP_006861830.1|	-	0.048	12.3	0.4	0.077	11.6	0.4	1.2	1	0	0	1	1	1	0	Peptidase	S46
Radical_SAM	PF04055.21	gi|408403848|ref|YP_006861831.1|	-	7e-11	42.8	0.0	1.3e-10	41.9	0.0	1.5	1	0	0	1	1	1	1	Radical	SAM	superfamily
DUF4590	PF15257.6	gi|408403848|ref|YP_006861831.1|	-	0.19	11.7	0.1	0.32	10.9	0.1	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4590)
Radical_SAM	PF04055.21	gi|408403849|ref|YP_006861832.1|	-	5.7e-18	65.9	0.0	1.1e-17	64.9	0.0	1.5	2	0	0	2	2	2	1	Radical	SAM	superfamily
TFIIB	PF00382.19	gi|408403850|ref|YP_006861833.1|	-	6.5e-29	99.8	2.2	2.1e-15	56.5	0.1	2.4	2	0	0	2	2	2	2	Transcription	factor	TFIIB	repeat
TF_Zn_Ribbon	PF08271.12	gi|408403850|ref|YP_006861833.1|	-	0.00021	20.7	2.7	0.00038	19.9	2.7	1.4	1	0	0	1	1	1	1	TFIIB	zinc-binding
HTH_11	PF08279.12	gi|408403850|ref|YP_006861833.1|	-	0.042	13.8	0.7	2.4	8.2	0.0	2.9	2	0	0	2	2	2	0	HTH	domain
RB_B	PF01857.20	gi|408403850|ref|YP_006861833.1|	-	0.075	13.1	0.0	0.14	12.2	0.0	1.4	1	0	0	1	1	1	0	Retinoblastoma-associated	protein	B	domain
Cyclin_N	PF00134.23	gi|408403850|ref|YP_006861833.1|	-	0.092	12.5	0.6	0.98	9.2	0.0	2.2	2	0	0	2	2	2	0	Cyclin,	N-terminal	domain
Potex_coat	PF06184.11	gi|408403850|ref|YP_006861833.1|	-	0.12	11.9	0.0	0.41	10.2	0.0	1.8	2	0	0	2	2	2	0	Potexvirus	coat	protein
A2L_zn_ribbon	PF08792.10	gi|408403850|ref|YP_006861833.1|	-	0.14	11.9	0.3	0.22	11.3	0.3	1.3	1	0	0	1	1	1	0	A2L	zinc	ribbon	domain
CPP1-like	PF11833.8	gi|408403851|ref|YP_006861834.1|	-	0.00049	19.8	0.6	0.00071	19.3	0.6	1.2	1	0	0	1	1	1	1	Protein	CHAPERONE-LIKE	PROTEIN	OF	POR1-like
HTH_45	PF14947.6	gi|408403851|ref|YP_006861834.1|	-	0.0012	18.8	0.0	0.002	18.1	0.0	1.3	1	0	0	1	1	1	1	Winged	helix-turn-helix
HTH_5	PF01022.20	gi|408403851|ref|YP_006861834.1|	-	0.0061	16.4	0.0	0.011	15.5	0.0	1.4	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
RTX	PF02382.15	gi|408403851|ref|YP_006861834.1|	-	0.0093	15.7	0.3	0.015	15.0	0.3	1.3	1	0	0	1	1	1	1	N-terminal	domain	in	RTX	protein
HTH_34	PF13601.6	gi|408403851|ref|YP_006861834.1|	-	0.036	14.3	0.0	0.18	12.0	0.0	2.0	1	1	0	1	1	1	0	Winged	helix	DNA-binding	domain
HTH_IclR	PF09339.10	gi|408403851|ref|YP_006861834.1|	-	0.14	12.0	0.0	0.39	10.5	0.0	1.7	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
HTH_24	PF13412.6	gi|408403851|ref|YP_006861834.1|	-	0.17	11.4	0.0	0.29	10.7	0.0	1.3	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
DUF2207	PF09972.9	gi|408403851|ref|YP_006861834.1|	-	0.6	8.8	2.4	1	8.1	2.4	1.6	1	1	0	1	1	1	0	Predicted	membrane	protein	(DUF2207)
DUF2976	PF11190.8	gi|408403851|ref|YP_006861834.1|	-	0.94	9.3	6.1	0.22	11.3	1.5	2.0	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF2976)
Proteasome	PF00227.26	gi|408403853|ref|YP_006861836.1|	-	3.2e-05	23.5	0.0	0.00099	18.6	0.0	2.6	1	1	0	2	2	2	1	Proteasome	subunit
ATP-cone	PF03477.16	gi|408403853|ref|YP_006861836.1|	-	0.15	12.6	2.7	0.29	11.7	0.2	2.2	2	0	0	2	2	2	0	ATP	cone	domain
SSPI	PF14098.6	gi|408403853|ref|YP_006861836.1|	-	3.3	7.9	5.8	1.1	9.5	0.7	2.4	2	1	1	3	3	3	0	Small,	acid-soluble	spore	protein	I
MazE_antitoxin	PF04014.18	gi|408403854|ref|YP_006861837.1|	-	2e-05	24.4	0.2	2.5e-05	24.1	0.2	1.2	1	0	0	1	1	1	1	Antidote-toxin	recognition	MazE,	bacterial	antitoxin
DnaA_N	PF11638.8	gi|408403854|ref|YP_006861837.1|	-	0.034	13.9	0.0	0.037	13.8	0.0	1.2	1	0	0	1	1	1	0	DnaA	N-terminal	domain
DDE_Tnp_IS240	PF13610.6	gi|408403855|ref|YP_006861838.1|	-	8.5e-20	71.4	0.5	2e-19	70.2	0.5	1.7	1	0	0	1	1	1	1	DDE	domain
rve	PF00665.26	gi|408403855|ref|YP_006861838.1|	-	1.7e-07	31.5	0.1	2.8e-07	30.7	0.1	1.3	1	0	0	1	1	1	1	Integrase	core	domain
rve_3	PF13683.6	gi|408403855|ref|YP_006861838.1|	-	5e-07	29.4	0.2	2.6e-06	27.1	0.1	2.2	2	0	0	2	2	2	1	Integrase	core	domain
Transposase_mut	PF00872.18	gi|408403855|ref|YP_006861838.1|	-	0.0018	17.2	1.6	0.05	12.5	0.0	2.1	1	1	0	2	2	2	1	Transposase,	Mutator	family
SWIM	PF04434.17	gi|408403855|ref|YP_006861838.1|	-	0.0019	17.8	0.1	0.0061	16.2	0.1	1.8	1	0	0	1	1	1	1	SWIM	zinc	finger
Lar_restr_allev	PF14354.6	gi|408403855|ref|YP_006861838.1|	-	0.0026	18.1	0.6	0.0026	18.1	0.6	1.9	2	0	0	2	2	1	1	Restriction	alleviation	protein	Lar
zf-CW	PF07496.15	gi|408403855|ref|YP_006861838.1|	-	0.011	15.7	3.9	0.051	13.6	0.3	2.4	2	0	0	2	2	2	0	CW-type	Zinc	Finger
MULE	PF10551.9	gi|408403855|ref|YP_006861838.1|	-	0.012	16.0	0.0	0.16	12.4	0.0	2.4	2	0	0	2	2	2	0	MULE	transposase	domain
YpmT	PF17431.2	gi|408403855|ref|YP_006861838.1|	-	0.03	14.3	0.0	0.082	12.9	0.0	1.7	2	0	0	2	2	1	0	Uncharacterized	YmpT-like
DpnI	PF06044.12	gi|408403855|ref|YP_006861838.1|	-	0.063	12.9	0.4	0.14	11.7	0.4	1.6	1	0	0	1	1	1	0	Dam-replacing	family
DUF4974	PF16344.5	gi|408403855|ref|YP_006861838.1|	-	0.064	13.3	0.1	0.17	11.9	0.0	1.8	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4974)
Zn_Tnp_IS1595	PF12760.7	gi|408403855|ref|YP_006861838.1|	-	0.11	12.4	0.9	0.36	10.8	0.9	1.9	1	0	0	1	1	1	0	Transposase	zinc-ribbon	domain
Zn-ribbon_8	PF09723.10	gi|408403855|ref|YP_006861838.1|	-	0.24	11.5	5.1	4.5	7.5	0.3	3.1	2	1	0	2	2	2	0	Zinc	ribbon	domain
OrfB_Zn_ribbon	PF07282.11	gi|408403855|ref|YP_006861838.1|	-	0.25	11.3	2.7	1.1	9.2	0.8	2.4	2	0	0	2	2	2	0	Putative	transposase	DNA-binding	domain
zf-C2H2	PF00096.26	gi|408403855|ref|YP_006861838.1|	-	0.3	11.6	5.6	0.095	13.2	1.6	2.2	2	0	0	2	2	2	0	Zinc	finger,	C2H2	type
zf_UBZ	PF18439.1	gi|408403855|ref|YP_006861838.1|	-	0.43	10.2	2.0	8	6.1	0.2	2.6	2	0	0	2	2	2	0	Ubiquitin-Binding	Zinc	Finger
Calici_PP_N	PF08405.11	gi|408403857|ref|YP_006861840.1|	-	0.047	12.5	0.0	0.05	12.4	0.0	1.0	1	0	0	1	1	1	0	Viral	polyprotein	N-terminal
HEPN	PF05168.14	gi|408403858|ref|YP_006861841.1|	-	0.014	15.5	0.2	0.06	13.5	0.1	2.1	2	1	0	2	2	2	0	HEPN	domain
DUF2937	PF11157.8	gi|408403858|ref|YP_006861841.1|	-	0.091	12.5	0.1	0.27	10.9	0.0	1.7	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2937)
Vac_Fusion	PF02346.16	gi|408403858|ref|YP_006861841.1|	-	0.12	12.1	0.1	0.33	10.6	0.1	1.8	1	0	0	1	1	1	0	Chordopoxvirus	multifunctional	envelope	protein	A27
DUF4047	PF13256.6	gi|408403858|ref|YP_006861841.1|	-	0.27	11.5	3.3	17	5.6	0.1	2.9	2	1	1	3	3	3	0	Domain	of	unknown	function	(DUF4047)
DNA_methylase	PF00145.17	gi|408403859|ref|YP_006861842.1|	-	1e-33	117.1	0.7	4.4e-31	108.4	0.7	2.0	1	1	0	1	1	1	1	C-5	cytosine-specific	DNA	methylase
Methyltransf_15	PF09445.10	gi|408403859|ref|YP_006861842.1|	-	0.0007	19.2	1.4	0.0025	17.4	1.4	1.9	1	1	0	1	1	1	1	RNA	cap	guanine-N2	methyltransferase
MethyltransfD12	PF02086.15	gi|408403859|ref|YP_006861842.1|	-	0.0036	17.0	0.0	0.006	16.3	0.0	1.3	1	1	0	1	1	1	1	D12	class	N6	adenine-specific	DNA	methyltransferase
Cons_hypoth95	PF03602.15	gi|408403859|ref|YP_006861842.1|	-	0.019	14.6	0.0	0.031	13.9	0.0	1.3	1	1	0	1	1	1	0	Conserved	hypothetical	protein	95
Methyltransf_25	PF13649.6	gi|408403859|ref|YP_006861842.1|	-	0.019	15.6	0.0	0.039	14.7	0.0	1.6	1	1	0	1	1	1	0	Methyltransferase	domain
Eco57I	PF07669.11	gi|408403859|ref|YP_006861842.1|	-	0.032	14.7	0.0	0.062	13.8	0.0	1.4	1	0	0	1	1	1	0	Eco57I	restriction-modification	methylase
PrmA	PF06325.13	gi|408403859|ref|YP_006861842.1|	-	0.063	12.7	0.0	0.084	12.2	0.0	1.2	1	0	0	1	1	1	0	Ribosomal	protein	L11	methyltransferase	(PrmA)
LapA_dom	PF06305.11	gi|408403860|ref|YP_006861843.1|	-	0.032	14.0	0.0	0.032	14.0	0.0	1.9	2	0	0	2	2	2	0	Lipopolysaccharide	assembly	protein	A	domain
DUF4064	PF13273.6	gi|408403860|ref|YP_006861843.1|	-	0.12	12.6	1.4	3.9	7.8	0.1	2.3	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF4064)
TIR_2	PF13676.6	gi|408403861|ref|YP_006861844.1|	-	6.7e-25	88.0	0.0	8.9e-25	87.6	0.0	1.1	1	0	0	1	1	1	1	TIR	domain
TIR	PF01582.20	gi|408403861|ref|YP_006861844.1|	-	1.6e-06	28.0	0.0	2e-06	27.7	0.0	1.2	1	0	0	1	1	1	1	TIR	domain
DUF1863	PF08937.11	gi|408403861|ref|YP_006861844.1|	-	1.4e-05	25.4	0.9	0.00011	22.5	0.9	2.1	1	1	0	1	1	1	1	MTH538	TIR-like	domain	(DUF1863)
A2L_zn_ribbon	PF08792.10	gi|408403861|ref|YP_006861844.1|	-	0.015	15.0	4.4	9.4	6.1	0.3	3.2	3	0	0	3	3	3	0	A2L	zinc	ribbon	domain
DUF3797	PF12677.7	gi|408403861|ref|YP_006861844.1|	-	0.09	12.7	0.3	0.17	11.8	0.3	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3797)
DUF35_N	PF12172.8	gi|408403861|ref|YP_006861844.1|	-	0.17	11.8	1.0	0.44	10.5	0.2	1.9	2	0	0	2	2	2	0	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
TF_Zn_Ribbon	PF08271.12	gi|408403861|ref|YP_006861844.1|	-	0.2	11.2	3.7	0.7	9.5	3.7	1.9	1	1	0	1	1	1	0	TFIIB	zinc-binding
YhfH	PF14149.6	gi|408403861|ref|YP_006861844.1|	-	0.23	11.4	1.6	1.5	8.8	0.1	2.3	2	0	0	2	2	2	0	YhfH-like	protein
Zn-ribbon_8	PF09723.10	gi|408403861|ref|YP_006861844.1|	-	0.29	11.3	3.2	1.2	9.3	0.3	2.3	1	1	1	2	2	2	0	Zinc	ribbon	domain
zinc_ribbon_2	PF13240.6	gi|408403861|ref|YP_006861844.1|	-	0.34	10.7	3.0	0.65	9.8	0.2	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
zf-ribbon_3	PF13248.6	gi|408403861|ref|YP_006861844.1|	-	0.35	10.4	3.0	0.45	10.0	0.2	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
AlbA_2	PF04326.14	gi|408403864|ref|YP_006861847.1|	-	8.2e-15	55.2	0.0	1.4e-14	54.4	0.0	1.4	1	0	0	1	1	1	1	Putative	DNA-binding	domain
4HB_MCP_1	PF12729.7	gi|408403865|ref|YP_006861848.1|	-	1.7e-09	37.5	0.1	2e-09	37.3	0.1	1.0	1	0	0	1	1	1	1	Four	helix	bundle	sensory	module	for	signal	transduction
TarH	PF02203.15	gi|408403865|ref|YP_006861848.1|	-	0.00011	22.2	0.0	0.00014	21.8	0.0	1.1	1	0	0	1	1	1	1	Tar	ligand	binding	domain	homologue
DUF5408	PF17402.2	gi|408403865|ref|YP_006861848.1|	-	0.11	12.3	0.6	0.19	11.6	0.6	1.3	1	0	0	1	1	1	0	Family	of	unknown	function	(DUF5408)
HAMP	PF00672.25	gi|408403866|ref|YP_006861849.1|	-	7.7e-13	48.6	0.0	2e-12	47.3	0.0	1.7	2	0	0	2	2	2	1	HAMP	domain
DUF3713	PF12506.8	gi|408403866|ref|YP_006861849.1|	-	0.074	13.4	0.4	0.13	12.6	0.1	1.5	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3713)
HATPase_c	PF02518.26	gi|408403867|ref|YP_006861850.1|	-	1e-23	83.9	0.3	2.2e-23	82.9	0.3	1.5	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HisKA	PF00512.25	gi|408403867|ref|YP_006861850.1|	-	3.5e-07	30.2	0.7	5.2e-06	26.4	0.0	2.8	3	0	0	3	3	3	1	His	Kinase	A	(phospho-acceptor)	domain
HATPase_c_5	PF14501.6	gi|408403867|ref|YP_006861850.1|	-	0.045	13.6	1.3	0.13	12.1	0.2	2.2	2	1	0	2	2	2	0	GHKL	domain
Response_reg	PF00072.24	gi|408403868|ref|YP_006861851.1|	-	4.6e-09	36.4	0.1	5.3e-09	36.2	0.1	1.1	1	0	0	1	1	1	1	Response	regulator	receiver	domain
AlaDh_PNT_N	PF05222.15	gi|408403869|ref|YP_006861852.1|	-	8.2e-39	133.0	0.0	2e-38	131.8	0.0	1.7	2	0	0	2	2	2	1	Alanine	dehydrogenase/PNT,	N-terminal	domain
AlaDh_PNT_C	PF01262.21	gi|408403869|ref|YP_006861852.1|	-	2.4e-20	72.7	0.1	7e-20	71.2	0.1	1.7	1	1	0	1	1	1	1	Alanine	dehydrogenase/PNT,	C-terminal	domain
NAD_binding_7	PF13241.6	gi|408403869|ref|YP_006861852.1|	-	7e-06	26.4	0.5	1.6e-05	25.3	0.5	1.6	1	0	0	1	1	1	1	Putative	NAD(P)-binding
2-Hacid_dh_C	PF02826.19	gi|408403869|ref|YP_006861852.1|	-	1.7e-05	24.3	0.1	3.7e-05	23.1	0.1	1.5	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
TrkA_N	PF02254.18	gi|408403869|ref|YP_006861852.1|	-	0.0001	22.5	0.1	0.00023	21.4	0.1	1.6	1	0	0	1	1	1	1	TrkA-N	domain
Shikimate_DH	PF01488.20	gi|408403869|ref|YP_006861852.1|	-	0.00016	21.7	0.5	0.00031	20.8	0.5	1.4	1	0	0	1	1	1	1	Shikimate	/	quinate	5-dehydrogenase
Pyr_redox	PF00070.27	gi|408403869|ref|YP_006861852.1|	-	0.00033	21.1	0.2	0.0011	19.5	0.2	1.9	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
ADH_zinc_N	PF00107.26	gi|408403869|ref|YP_006861852.1|	-	0.00036	20.5	0.0	0.0011	18.9	0.0	1.9	1	1	0	1	1	1	1	Zinc-binding	dehydrogenase
F420_oxidored	PF03807.17	gi|408403869|ref|YP_006861852.1|	-	0.00046	20.7	0.5	0.0014	19.2	0.5	1.9	1	0	0	1	1	1	1	NADP	oxidoreductase	coenzyme	F420-dependent
XdhC_C	PF13478.6	gi|408403869|ref|YP_006861852.1|	-	0.0006	20.3	0.0	0.0012	19.4	0.0	1.5	1	0	0	1	1	1	1	XdhC	Rossmann	domain
Pyr_redox_2	PF07992.14	gi|408403869|ref|YP_006861852.1|	-	0.0056	16.0	0.0	0.0089	15.3	0.0	1.3	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_binding_3	PF01494.19	gi|408403869|ref|YP_006861852.1|	-	0.0094	15.2	0.0	0.015	14.6	0.0	1.3	1	0	0	1	1	1	1	FAD	binding	domain
HI0933_like	PF03486.14	gi|408403869|ref|YP_006861852.1|	-	0.036	12.8	0.3	0.056	12.1	0.3	1.2	1	0	0	1	1	1	0	HI0933-like	protein
ELFV_dehydrog	PF00208.21	gi|408403869|ref|YP_006861852.1|	-	0.041	13.6	0.1	0.11	12.3	0.1	1.6	1	0	0	1	1	1	0	Glutamate/Leucine/Phenylalanine/Valine	dehydrogenase
Sacchrp_dh_NADP	PF03435.18	gi|408403869|ref|YP_006861852.1|	-	0.058	13.6	0.3	0.17	12.1	0.3	1.9	1	1	0	1	1	1	0	Saccharopine	dehydrogenase	NADP	binding	domain
AdoHcyase_NAD	PF00670.21	gi|408403869|ref|YP_006861852.1|	-	0.085	12.9	0.3	0.25	11.4	0.1	1.8	2	0	0	2	2	2	0	S-adenosyl-L-homocysteine	hydrolase,	NAD	binding	domain
PALP	PF00291.25	gi|408403869|ref|YP_006861852.1|	-	0.1	12.0	0.0	0.17	11.2	0.0	1.4	1	0	0	1	1	1	0	Pyridoxal-phosphate	dependent	enzyme
FAD_oxidored	PF12831.7	gi|408403869|ref|YP_006861852.1|	-	0.37	10.1	1.6	0.6	9.4	1.6	1.3	1	0	0	1	1	1	0	FAD	dependent	oxidoreductase
Glyco_trans_4_2	PF13477.6	gi|408403870|ref|YP_006861853.1|	-	0.068	13.2	0.0	0.08	13.0	0.0	1.1	1	0	0	1	1	1	0	Glycosyl	transferase	4-like
Rieske	PF00355.26	gi|408403871|ref|YP_006861854.1|	-	2.9e-14	52.8	0.0	3.5e-14	52.5	0.0	1.1	1	0	0	1	1	1	1	Rieske	[2Fe-2S]	domain
Rieske_2	PF13806.6	gi|408403871|ref|YP_006861854.1|	-	1.1e-05	25.3	0.0	1.2e-05	25.2	0.0	1.1	1	0	0	1	1	1	1	Rieske-like	[2Fe-2S]	domain
FMN_red	PF03358.15	gi|408403872|ref|YP_006861855.1|	-	5.9e-06	26.1	0.1	8.5e-06	25.6	0.1	1.2	1	0	0	1	1	1	1	NADPH-dependent	FMN	reductase
Xol-1_GHMP-like	PF09109.10	gi|408403873|ref|YP_006861856.1|	-	0.017	15.0	0.0	0.019	14.8	0.0	1.1	1	0	0	1	1	1	0	Switch	protein	XOL-1,	GHMP-like
UvrC_HhH_N	PF08459.11	gi|408403875|ref|YP_006861858.1|	-	2.4e-41	141.2	0.0	4.9e-41	140.2	0.0	1.6	1	0	0	1	1	1	1	UvrC	Helix-hairpin-helix	N-terminal
GIY-YIG	PF01541.24	gi|408403875|ref|YP_006861858.1|	-	3.5e-10	40.0	0.1	8.9e-10	38.7	0.1	1.7	1	0	0	1	1	1	1	GIY-YIG	catalytic	domain
UVR	PF02151.19	gi|408403875|ref|YP_006861858.1|	-	6.6e-06	25.7	1.3	6.6e-06	25.7	1.3	2.5	2	0	0	2	2	2	1	UvrB/uvrC	motif
HPS6	PF15702.5	gi|408403875|ref|YP_006861858.1|	-	0.025	12.6	0.0	0.62	8.0	0.0	2.0	2	0	0	2	2	2	0	Hermansky-Pudlak	syndrome	6	protein
UvrA_inter	PF17760.1	gi|408403876|ref|YP_006861859.1|	-	7.3e-37	125.8	0.4	1.7e-36	124.6	0.4	1.7	1	0	0	1	1	1	1	UvrA	interaction	domain
UvrA_DNA-bind	PF17755.1	gi|408403876|ref|YP_006861859.1|	-	3.3e-36	124.0	0.1	9.9e-34	116.0	0.0	3.3	3	0	0	3	3	3	1	UvrA	DNA-binding	domain
ABC_tran	PF00005.27	gi|408403876|ref|YP_006861859.1|	-	5.2e-23	82.1	0.2	1.2e-08	35.5	0.0	4.6	3	1	0	3	3	3	3	ABC	transporter
SMC_N	PF02463.19	gi|408403876|ref|YP_006861859.1|	-	2.9e-11	43.2	0.0	0.24	10.8	0.0	4.1	4	0	0	4	4	4	4	RecF/RecN/SMC	N	terminal	domain
AAA_21	PF13304.6	gi|408403876|ref|YP_006861859.1|	-	2.6e-09	37.3	7.5	0.00052	19.9	0.0	4.7	5	0	0	5	5	5	3	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_16	PF13191.6	gi|408403876|ref|YP_006861859.1|	-	5e-09	36.8	0.1	0.0032	17.9	0.0	3.6	3	1	0	4	4	4	2	AAA	ATPase	domain
AAA_29	PF13555.6	gi|408403876|ref|YP_006861859.1|	-	7.8e-09	35.2	0.4	0.0038	17.0	0.0	3.0	3	0	0	3	3	2	2	P-loop	containing	region	of	AAA	domain
RsgA_GTPase	PF03193.16	gi|408403876|ref|YP_006861859.1|	-	4.9e-07	29.8	0.0	0.013	15.4	0.0	2.5	2	0	0	2	2	2	2	RsgA	GTPase
AAA_23	PF13476.6	gi|408403876|ref|YP_006861859.1|	-	1.7e-06	28.6	3.8	0.0022	18.5	0.3	2.9	3	0	0	3	3	2	2	AAA	domain
AAA_33	PF13671.6	gi|408403876|ref|YP_006861859.1|	-	3e-06	27.4	0.1	0.27	11.4	0.0	4.0	4	0	0	4	4	4	2	AAA	domain
AAA_22	PF13401.6	gi|408403876|ref|YP_006861859.1|	-	3.8e-06	27.2	0.5	0.39	11.0	0.0	4.1	4	0	0	4	4	4	2	AAA	domain
ATPase_2	PF01637.18	gi|408403876|ref|YP_006861859.1|	-	9e-06	25.8	0.3	0.053	13.4	0.0	3.1	3	0	0	3	3	3	2	ATPase	domain	predominantly	from	Archaea
NB-ARC	PF00931.22	gi|408403876|ref|YP_006861859.1|	-	1.1e-05	24.8	0.2	1.1	8.4	0.0	3.4	3	0	0	3	3	3	1	NB-ARC	domain
AAA_14	PF13173.6	gi|408403876|ref|YP_006861859.1|	-	1.8e-05	24.8	0.1	0.22	11.6	0.0	4.0	4	0	0	4	4	4	1	AAA	domain
AAA_25	PF13481.6	gi|408403876|ref|YP_006861859.1|	-	8.6e-05	22.2	0.0	0.19	11.2	0.0	3.2	3	0	0	3	3	3	1	AAA	domain
APS_kinase	PF01583.20	gi|408403876|ref|YP_006861859.1|	-	0.00011	22.2	0.2	0.37	10.7	0.0	2.9	3	0	0	3	3	3	2	Adenylylsulphate	kinase
cobW	PF02492.19	gi|408403876|ref|YP_006861859.1|	-	0.00014	21.5	0.1	0.1	12.2	0.0	2.7	3	0	0	3	3	2	1	CobW/HypB/UreG,	nucleotide-binding	domain
ATPase	PF06745.13	gi|408403876|ref|YP_006861859.1|	-	0.00016	21.1	0.0	0.86	8.9	0.0	3.1	3	0	0	3	3	3	2	KaiC
DUF2075	PF09848.9	gi|408403876|ref|YP_006861859.1|	-	0.00019	20.8	0.1	0.51	9.5	0.0	2.9	3	0	0	3	3	3	2	Uncharacterized	conserved	protein	(DUF2075)
AAA_18	PF13238.6	gi|408403876|ref|YP_006861859.1|	-	0.00019	22.0	0.0	1	9.9	0.0	3.0	2	0	0	2	2	2	2	AAA	domain
NACHT	PF05729.12	gi|408403876|ref|YP_006861859.1|	-	0.0004	20.3	0.0	0.59	10.0	0.0	2.6	2	0	0	2	2	2	2	NACHT	domain
T2SSE	PF00437.20	gi|408403876|ref|YP_006861859.1|	-	0.00086	18.5	0.0	1.3	8.0	0.0	2.4	2	0	0	2	2	2	2	Type	II/IV	secretion	system	protein
Viral_helicase1	PF01443.18	gi|408403876|ref|YP_006861859.1|	-	0.0014	18.5	0.0	0.21	11.3	0.0	3.0	2	0	0	2	2	2	1	Viral	(Superfamily	1)	RNA	helicase
AAA_15	PF13175.6	gi|408403876|ref|YP_006861859.1|	-	0.0043	16.8	8.1	1.1	8.9	0.0	4.4	5	0	0	5	5	4	1	AAA	ATPase	domain
MMR_HSR1	PF01926.23	gi|408403876|ref|YP_006861859.1|	-	0.0055	16.8	0.1	4.4	7.4	0.0	3.4	3	0	0	3	3	3	0	50S	ribosome-binding	GTPase
AAA_30	PF13604.6	gi|408403876|ref|YP_006861859.1|	-	0.0076	16.0	0.0	4.7	6.9	0.0	2.7	3	0	0	3	3	2	0	AAA	domain
RNA_helicase	PF00910.22	gi|408403876|ref|YP_006861859.1|	-	0.0079	16.6	0.0	1.4	9.3	0.0	2.7	2	0	0	2	2	2	1	RNA	helicase
NTPase_1	PF03266.15	gi|408403876|ref|YP_006861859.1|	-	0.0095	15.9	1.5	2.7	7.9	0.0	3.4	4	0	0	4	4	2	1	NTPase
BCA_ABC_TP_C	PF12399.8	gi|408403876|ref|YP_006861859.1|	-	0.011	15.6	0.3	0.12	12.4	0.1	2.5	2	0	0	2	2	2	0	Branched-chain	amino	acid	ATP-binding	cassette	transporter
DnaJ_CXXCXGXG	PF00684.19	gi|408403876|ref|YP_006861859.1|	-	0.013	15.9	16.1	0.017	15.5	0.9	4.3	4	1	1	5	5	4	0	DnaJ	central	domain
MeaB	PF03308.16	gi|408403876|ref|YP_006861859.1|	-	0.016	14.2	0.9	4.5	6.2	0.0	3.1	3	0	0	3	3	3	0	Methylmalonyl	Co-A	mutase-associated	GTPase	MeaB
AAA_28	PF13521.6	gi|408403876|ref|YP_006861859.1|	-	0.018	15.3	0.0	9.5	6.4	0.0	2.7	2	0	0	2	2	2	0	AAA	domain
FtsK_SpoIIIE	PF01580.18	gi|408403876|ref|YP_006861859.1|	-	0.028	13.8	0.3	1.4	8.2	0.0	2.6	3	0	0	3	3	2	0	FtsK/SpoIIIE	family
AAA_7	PF12775.7	gi|408403876|ref|YP_006861859.1|	-	0.032	13.7	0.0	7.3	6.1	0.0	2.8	3	0	0	3	3	3	0	P-loop	containing	dynein	motor	region
RACo_linker	PF17650.1	gi|408403876|ref|YP_006861859.1|	-	0.054	13.4	0.1	1.5	8.7	0.0	2.8	3	0	0	3	3	2	0	RACo	linker	region
Sigma54_activat	PF00158.26	gi|408403876|ref|YP_006861859.1|	-	0.073	12.8	0.0	2.5	7.8	0.0	2.5	2	0	0	2	2	2	0	Sigma-54	interaction	domain
Zeta_toxin	PF06414.12	gi|408403876|ref|YP_006861859.1|	-	0.076	12.3	0.0	3.7	6.8	0.0	2.6	2	0	0	2	2	2	0	Zeta	toxin
DAP3	PF10236.9	gi|408403876|ref|YP_006861859.1|	-	0.078	12.1	0.1	9.2	5.3	0.0	2.4	2	0	0	2	2	2	0	Mitochondrial	ribosomal	death-associated	protein	3
AAA_24	PF13479.6	gi|408403876|ref|YP_006861859.1|	-	0.081	12.6	3.0	12	5.6	0.0	3.5	4	0	0	4	4	4	0	AAA	domain
DiS_P_DiS	PF06750.13	gi|408403876|ref|YP_006861859.1|	-	0.15	12.2	0.7	33	4.7	0.0	3.4	3	0	0	3	3	3	0	Bacterial	Peptidase	A24	N-terminal	domain
Sgf11	PF08209.11	gi|408403876|ref|YP_006861859.1|	-	0.17	11.4	2.4	1.5	8.5	0.2	2.8	2	0	0	2	2	2	0	Sgf11	(transcriptional	regulation	protein)
zinc_ribbon_2	PF13240.6	gi|408403876|ref|YP_006861859.1|	-	0.38	10.5	6.6	1.9	8.3	0.2	3.3	3	0	0	3	3	3	0	zinc-ribbon	domain
DUF87	PF01935.17	gi|408403876|ref|YP_006861859.1|	-	0.43	10.6	4.0	4.5	7.3	0.0	3.6	4	0	0	4	4	4	0	Helicase	HerA,	central	domain
zf-ribbon_3	PF13248.6	gi|408403876|ref|YP_006861859.1|	-	0.45	10.0	7.8	2.4	7.7	0.1	3.0	3	0	0	3	3	3	0	zinc-ribbon	domain
UvrB_inter	PF17757.1	gi|408403877|ref|YP_006861860.1|	-	5.3e-28	97.0	0.4	1.8e-27	95.4	0.1	2.1	2	0	0	2	2	2	1	UvrB	interaction	domain
UvrB	PF12344.8	gi|408403877|ref|YP_006861860.1|	-	4.3e-20	71.3	2.9	4.3e-20	71.3	2.9	2.0	2	0	0	2	2	1	1	Ultra-violet	resistance	protein	B
Helicase_C	PF00271.31	gi|408403877|ref|YP_006861860.1|	-	2e-18	66.7	0.3	6.6e-18	65.1	0.3	1.9	1	0	0	1	1	1	1	Helicase	conserved	C-terminal	domain
ResIII	PF04851.15	gi|408403877|ref|YP_006861860.1|	-	1.9e-09	37.8	3.2	2.3e-09	37.5	0.0	2.7	4	0	0	4	4	4	1	Type	III	restriction	enzyme,	res	subunit
DEAD	PF00270.29	gi|408403877|ref|YP_006861860.1|	-	2.4e-06	27.5	0.2	0.00078	19.3	0.0	3.4	3	0	0	3	3	3	1	DEAD/DEAH	box	helicase
UVR	PF02151.19	gi|408403877|ref|YP_006861860.1|	-	0.0027	17.4	3.3	0.0027	17.4	3.3	2.8	3	0	0	3	3	3	1	UvrB/uvrC	motif
Met_synt_B12	PF02965.17	gi|408403877|ref|YP_006861860.1|	-	0.014	14.9	0.1	0.6	9.5	0.1	2.8	3	0	0	3	3	3	0	Vitamin	B12	dependent	methionine	synthase,	activation	domain
Kinesin	PF00225.23	gi|408403877|ref|YP_006861860.1|	-	0.014	14.3	0.0	0.031	13.2	0.0	1.5	1	0	0	1	1	1	0	Kinesin	motor	domain
UB2H	PF14814.6	gi|408403877|ref|YP_006861860.1|	-	0.037	14.0	0.0	0.12	12.5	0.0	1.9	1	0	0	1	1	1	0	Bifunctional	transglycosylase	second	domain
Microtub_bd	PF16796.5	gi|408403877|ref|YP_006861860.1|	-	0.038	13.9	0.3	0.16	11.9	0.0	2.1	2	0	0	2	2	2	0	Microtubule	binding
AAA_30	PF13604.6	gi|408403877|ref|YP_006861860.1|	-	0.048	13.4	0.0	0.3	10.8	0.0	2.1	2	0	0	2	2	2	0	AAA	domain
DUF3194	PF11419.8	gi|408403877|ref|YP_006861860.1|	-	0.066	13.6	2.3	13	6.2	0.1	3.1	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF3194)
TrwB_AAD_bind	PF10412.9	gi|408403877|ref|YP_006861860.1|	-	0.085	11.8	0.6	5.8	5.7	0.1	2.2	2	0	0	2	2	2	0	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
ATP-synt_ab	PF00006.25	gi|408403877|ref|YP_006861860.1|	-	0.096	12.3	0.0	0.15	11.7	0.0	1.3	1	0	0	1	1	1	0	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
AAA_19	PF13245.6	gi|408403877|ref|YP_006861860.1|	-	0.11	12.9	4.6	2.4	8.5	0.3	2.7	2	1	0	2	2	2	0	AAA	domain
ABC_tran	PF00005.27	gi|408403877|ref|YP_006861860.1|	-	0.16	12.5	1.9	0.45	11.0	0.0	2.6	3	0	0	3	3	3	0	ABC	transporter
DUF5345	PF17280.2	gi|408403877|ref|YP_006861860.1|	-	0.61	10.1	2.2	30	4.7	0.2	2.7	2	0	0	2	2	2	0	Family	of	unknown	function	(DUF5345)
RecG_N	PF17190.4	gi|408403877|ref|YP_006861860.1|	-	1.4	9.7	9.2	18	6.1	0.2	4.6	4	1	1	5	5	5	0	RecG	N-terminal	helical	domain
UvrD-helicase	PF00580.21	gi|408403877|ref|YP_006861860.1|	-	2	7.9	13.4	3.8	6.9	0.3	2.6	2	1	0	2	2	2	0	UvrD/REP	helicase	N-terminal	domain
DUF87	PF01935.17	gi|408403877|ref|YP_006861860.1|	-	2.6	8.1	9.1	0.83	9.7	0.4	2.9	2	1	0	2	2	2	0	Helicase	HerA,	central	domain
DUF5392	PF17370.2	gi|408403878|ref|YP_006861861.1|	-	0.014	15.5	0.3	0.015	15.4	0.3	1.1	1	0	0	1	1	1	0	Family	of	unknown	function	(DUF5392)
DUF2207	PF09972.9	gi|408403878|ref|YP_006861861.1|	-	0.021	13.6	0.2	0.024	13.4	0.2	1.1	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2207)
Goodbye	PF17109.5	gi|408403878|ref|YP_006861861.1|	-	0.17	12.3	1.0	0.28	11.6	0.8	1.5	1	1	0	1	1	1	0	fungal	STAND	N-terminal	Goodbye	domain
HD_4	PF13328.6	gi|408403879|ref|YP_006861862.1|	-	5e-07	29.6	0.0	8.2e-07	28.9	0.0	1.3	1	0	0	1	1	1	1	HD	domain
ETF	PF01012.21	gi|408403880|ref|YP_006861863.1|	-	8.8e-26	90.9	0.0	1.2e-25	90.4	0.0	1.2	1	0	0	1	1	1	1	Electron	transfer	flavoprotein	domain
ETF_alpha	PF00766.19	gi|408403881|ref|YP_006861864.1|	-	1.7e-26	92.1	0.0	3e-26	91.3	0.0	1.4	1	0	0	1	1	1	1	Electron	transfer	flavoprotein	FAD-binding	domain
ETF	PF01012.21	gi|408403881|ref|YP_006861864.1|	-	4.1e-15	56.1	0.0	1.5e-14	54.3	0.0	1.9	1	1	0	1	1	1	1	Electron	transfer	flavoprotein	domain
FAD_binding_3	PF01494.19	gi|408403882|ref|YP_006861865.1|	-	2.7e-08	33.5	2.1	0.00051	19.4	1.6	3.2	2	1	0	2	2	2	2	FAD	binding	domain
DAO	PF01266.24	gi|408403882|ref|YP_006861865.1|	-	7.3e-08	32.4	0.1	0.0011	18.6	0.0	2.3	2	0	0	2	2	2	2	FAD	dependent	oxidoreductase
HI0933_like	PF03486.14	gi|408403882|ref|YP_006861865.1|	-	1.8e-05	23.7	3.1	4.2e-05	22.4	1.2	2.0	2	0	0	2	2	2	1	HI0933-like	protein
Pyr_redox_2	PF07992.14	gi|408403882|ref|YP_006861865.1|	-	2.4e-05	23.7	0.5	5e-05	22.7	0.5	1.6	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_binding_8	PF13450.6	gi|408403882|ref|YP_006861865.1|	-	0.0018	18.5	0.2	0.0064	16.7	0.0	2.1	2	0	0	2	2	2	1	NAD(P)-binding	Rossmann-like	domain
FAD_binding_2	PF00890.24	gi|408403882|ref|YP_006861865.1|	-	0.0026	16.9	0.5	0.0026	16.9	0.5	2.1	3	0	0	3	3	3	1	FAD	binding	domain
FAD_oxidored	PF12831.7	gi|408403882|ref|YP_006861865.1|	-	0.0028	17.1	0.1	0.0044	16.4	0.1	1.4	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
Thi4	PF01946.17	gi|408403882|ref|YP_006861865.1|	-	0.0035	16.6	0.5	0.0075	15.5	0.5	1.5	1	0	0	1	1	1	1	Thi4	family
Lycopene_cycl	PF05834.12	gi|408403882|ref|YP_006861865.1|	-	0.0058	15.7	0.3	0.13	11.3	0.3	2.6	3	0	0	3	3	3	1	Lycopene	cyclase	protein
Pyr_redox_3	PF13738.6	gi|408403882|ref|YP_006861865.1|	-	0.01	15.1	2.9	0.75	9.0	1.2	2.5	2	0	0	2	2	2	0	Pyridine	nucleotide-disulphide	oxidoreductase
Amino_oxidase	PF01593.24	gi|408403882|ref|YP_006861865.1|	-	0.017	14.4	0.2	2.6	7.3	0.0	2.3	2	0	0	2	2	2	0	Flavin	containing	amine	oxidoreductase
Pyr_redox	PF00070.27	gi|408403882|ref|YP_006861865.1|	-	0.055	14.0	0.2	0.21	12.2	0.2	2.1	1	0	0	1	1	1	0	Pyridine	nucleotide-disulphide	oxidoreductase
GIDA	PF01134.22	gi|408403882|ref|YP_006861865.1|	-	0.06	12.4	0.3	0.13	11.3	0.3	1.5	1	0	0	1	1	1	0	Glucose	inhibited	division	protein	A
ETF_QO	PF05187.13	gi|408403882|ref|YP_006861865.1|	-	0.08	13.1	0.2	0.25	11.5	0.2	1.8	1	0	0	1	1	1	0	Electron	transfer	flavoprotein-ubiquinone	oxidoreductase,	4Fe-4S
AlaDh_PNT_C	PF01262.21	gi|408403882|ref|YP_006861865.1|	-	0.14	11.4	0.3	0.26	10.6	0.3	1.4	1	0	0	1	1	1	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
NAD_binding_9	PF13454.6	gi|408403882|ref|YP_006861865.1|	-	0.26	11.3	1.0	4.4	7.3	0.1	2.8	3	0	0	3	3	3	0	FAD-NAD(P)-binding
Fer4	PF00037.27	gi|408403882|ref|YP_006861865.1|	-	2.2	8.2	4.9	0.3	11.0	0.9	1.7	2	0	0	2	2	2	0	4Fe-4S	binding	domain
AhpC-TSA	PF00578.21	gi|408403883|ref|YP_006861866.1|	-	5.1e-23	81.3	0.0	6.6e-23	81.0	0.0	1.1	1	0	0	1	1	1	1	AhpC/TSA	family
Redoxin	PF08534.10	gi|408403883|ref|YP_006861866.1|	-	8e-17	61.3	0.0	1.1e-16	60.9	0.0	1.1	1	0	0	1	1	1	1	Redoxin
GSHPx	PF00255.19	gi|408403883|ref|YP_006861866.1|	-	0.00017	21.1	0.0	0.00023	20.7	0.0	1.2	1	0	0	1	1	1	1	Glutathione	peroxidase
Thioredoxin_2	PF13098.6	gi|408403883|ref|YP_006861866.1|	-	0.0045	17.4	0.0	0.0092	16.4	0.0	1.5	1	1	0	1	1	1	1	Thioredoxin-like	domain
SCO1-SenC	PF02630.14	gi|408403883|ref|YP_006861866.1|	-	0.03	14.2	0.0	0.043	13.7	0.0	1.2	1	0	0	1	1	1	0	SCO1/SenC
Thioredoxin_8	PF13905.6	gi|408403883|ref|YP_006861866.1|	-	0.072	13.4	0.0	0.13	12.6	0.0	1.3	1	0	0	1	1	1	0	Thioredoxin-like
Radical_SAM	PF04055.21	gi|408403887|ref|YP_006861870.1|	-	5.4e-23	82.2	0.2	8.5e-23	81.5	0.2	1.3	1	0	0	1	1	1	1	Radical	SAM	superfamily
UPF0004	PF00919.20	gi|408403887|ref|YP_006861870.1|	-	6.8e-17	61.3	0.7	1.2e-16	60.5	0.0	1.8	2	0	0	2	2	2	1	Uncharacterized	protein	family	UPF0004
zf-PARP	PF00645.18	gi|408403887|ref|YP_006861870.1|	-	0.012	16.5	0.6	0.036	14.9	0.6	1.8	1	0	0	1	1	1	0	Poly(ADP-ribose)	polymerase	and	DNA-Ligase	Zn-finger	region
Tubulin	PF00091.25	gi|408403888|ref|YP_006861871.1|	-	4.6e-15	56.3	2.3	8.3e-14	52.2	0.1	2.4	2	1	1	3	3	3	2	Tubulin/FtsZ	family,	GTPase	domain
zf-trcl	PF13451.6	gi|408403889|ref|YP_006861872.1|	-	0.074	13.0	0.2	0.074	13.0	0.2	2.7	2	1	1	3	3	3	0	Probable	zinc-ribbon	domain
Glycolipid_bind	PF06475.11	gi|408403890|ref|YP_006861873.1|	-	1.7e-05	24.4	0.0	1.7e-05	24.4	0.0	1.0	1	0	0	1	1	1	1	Putative	glycolipid-binding
Ribosomal_L31e	PF01198.19	gi|408403891|ref|YP_006861874.1|	-	2.7e-16	59.6	0.5	4.4e-16	58.9	0.5	1.3	1	0	0	1	1	1	1	Ribosomal	protein	L31e
Ribosomal_L39	PF00832.20	gi|408403892|ref|YP_006861875.1|	-	6.7e-17	60.8	16.3	1.1e-16	60.1	16.3	1.4	1	0	0	1	1	1	1	Ribosomal	L39	protein
DUF1449	PF07290.11	gi|408403893|ref|YP_006861876.1|	-	0.088	12.4	0.0	0.092	12.4	0.0	1.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1449)
Cys_rich_KTR	PF14205.6	gi|408403895|ref|YP_006861878.1|	-	0.049	13.4	2.3	0.055	13.3	1.3	1.6	2	0	0	2	2	2	0	Cysteine-rich	KTR
DUF3716	PF12511.8	gi|408403895|ref|YP_006861878.1|	-	0.068	13.2	2.0	0.093	12.8	2.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3716)
Lon_C	PF05362.13	gi|408403896|ref|YP_006861879.1|	-	1.2e-07	31.5	0.7	2.2e-07	30.6	0.7	1.5	1	0	0	1	1	1	1	Lon	protease	(S16)	C-terminal	proteolytic	domain
Laminin_I	PF06008.14	gi|408403896|ref|YP_006861879.1|	-	4e-06	26.7	16.2	5.5e-06	26.3	16.2	1.1	1	0	0	1	1	1	1	Laminin	Domain	I
TMF_DNA_bd	PF12329.8	gi|408403896|ref|YP_006861879.1|	-	6.5e-05	22.8	10.2	6.5e-05	22.8	10.2	2.2	1	1	1	2	2	2	1	TATA	element	modulatory	factor	1	DNA	binding
Atg14	PF10186.9	gi|408403896|ref|YP_006861879.1|	-	0.00056	19.1	10.0	0.00097	18.3	10.0	1.3	1	0	0	1	1	1	1	Vacuolar	sorting	38	and	autophagy-related	subunit	14
ADIP	PF11559.8	gi|408403896|ref|YP_006861879.1|	-	0.0027	17.8	16.7	0.006	16.7	16.7	1.5	1	1	0	1	1	1	1	Afadin-	and	alpha	-actinin-Binding
Fez1	PF06818.15	gi|408403896|ref|YP_006861879.1|	-	0.0034	17.9	10.0	0.007	16.8	10.0	1.4	1	0	0	1	1	1	1	Fez1
CENP-F_leu_zip	PF10473.9	gi|408403896|ref|YP_006861879.1|	-	0.0039	17.2	15.1	0.0063	16.5	14.8	1.5	1	1	0	1	1	1	1	Leucine-rich	repeats	of	kinetochore	protein	Cenp-F/LEK1
Spc7	PF08317.11	gi|408403896|ref|YP_006861879.1|	-	0.0072	15.3	18.5	0.049	12.5	18.5	1.9	1	1	0	1	1	1	1	Spc7	kinetochore	protein
MAP65_ASE1	PF03999.12	gi|408403896|ref|YP_006861879.1|	-	0.0074	15.1	4.6	0.0095	14.7	4.6	1.0	1	0	0	1	1	1	1	Microtubule	associated	protein	(MAP65/ASE1	family)
AAA_13	PF13166.6	gi|408403896|ref|YP_006861879.1|	-	0.013	14.1	7.3	0.023	13.4	7.3	1.3	1	0	0	1	1	1	0	AAA	domain
DivIC	PF04977.15	gi|408403896|ref|YP_006861879.1|	-	0.015	15.1	21.6	0.75	9.6	5.8	3.4	1	1	2	3	3	3	0	Septum	formation	initiator
KASH_CCD	PF14662.6	gi|408403896|ref|YP_006861879.1|	-	0.021	14.7	14.6	0.036	13.9	14.6	1.3	1	0	0	1	1	1	0	Coiled-coil	region	of	CCDC155	or	KASH
SlyX	PF04102.12	gi|408403896|ref|YP_006861879.1|	-	0.03	15.0	10.8	0.03	15.0	10.8	3.2	1	1	2	3	3	3	0	SlyX
BRE1	PF08647.11	gi|408403896|ref|YP_006861879.1|	-	0.032	14.3	16.7	0.057	13.5	16.7	1.4	1	1	0	1	1	1	0	BRE1	E3	ubiquitin	ligase
Jnk-SapK_ap_N	PF09744.9	gi|408403896|ref|YP_006861879.1|	-	0.036	14.3	13.3	0.058	13.6	13.3	1.3	1	0	0	1	1	1	0	JNK_SAPK-associated	protein-1
MAD	PF05557.13	gi|408403896|ref|YP_006861879.1|	-	0.039	12.3	13.3	0.051	11.9	13.3	1.1	1	0	0	1	1	1	0	Mitotic	checkpoint	protein
SCO1-SenC	PF02630.14	gi|408403896|ref|YP_006861879.1|	-	0.047	13.6	1.0	0.36	10.8	0.3	2.4	2	1	0	2	2	2	0	SCO1/SenC
TolA_bind_tri	PF16331.5	gi|408403896|ref|YP_006861879.1|	-	0.053	13.6	26.4	0.07	13.2	10.6	2.7	1	1	2	3	3	3	0	TolA	binding	protein	trimerisation
Filament	PF00038.21	gi|408403896|ref|YP_006861879.1|	-	0.057	13.0	16.6	0.26	10.8	16.6	1.8	1	1	0	1	1	1	0	Intermediate	filament	protein
zf-C4H2	PF10146.9	gi|408403896|ref|YP_006861879.1|	-	0.062	13.6	2.7	0.079	13.3	2.7	1.2	1	0	0	1	1	1	0	Zinc	finger-containing	protein
MscS_porin	PF12795.7	gi|408403896|ref|YP_006861879.1|	-	0.075	12.6	29.9	0.65	9.5	14.2	2.1	1	1	1	2	2	2	0	Mechanosensitive	ion	channel	porin	domain
HrpB7	PF09486.10	gi|408403896|ref|YP_006861879.1|	-	0.088	13.2	14.7	0.7	10.3	13.8	2.1	1	1	1	2	2	2	0	Bacterial	type	III	secretion	protein	(HrpB7)
kleA_kleC	PF17383.2	gi|408403896|ref|YP_006861879.1|	-	0.096	13.0	8.2	0.19	12.1	2.0	2.9	1	1	2	3	3	3	0	Uncharacterized	KorC	regulated	protein	A
Golgin_A5	PF09787.9	gi|408403896|ref|YP_006861879.1|	-	0.098	12.1	12.0	0.19	11.2	12.0	1.4	1	0	0	1	1	1	0	Golgin	subfamily	A	member	5
ATG16	PF08614.11	gi|408403896|ref|YP_006861879.1|	-	0.11	12.7	21.1	0.43	10.8	21.1	1.7	1	1	0	1	1	1	0	Autophagy	protein	16	(ATG16)
Lebercilin	PF15619.6	gi|408403896|ref|YP_006861879.1|	-	0.14	11.8	14.4	0.56	9.8	14.4	1.8	1	1	0	1	1	1	0	Ciliary	protein	causing	Leber	congenital	amaurosis	disease
Troponin	PF00992.20	gi|408403896|ref|YP_006861879.1|	-	0.14	12.4	7.1	0.69	10.2	2.5	2.2	2	0	0	2	2	2	0	Troponin
DUF4686	PF15742.5	gi|408403896|ref|YP_006861879.1|	-	0.16	11.1	17.9	0.22	10.6	17.9	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4686)
DUF4407	PF14362.6	gi|408403896|ref|YP_006861879.1|	-	0.17	11.2	11.5	0.27	10.5	11.5	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4407)
Fib_alpha	PF08702.10	gi|408403896|ref|YP_006861879.1|	-	0.2	11.8	15.2	0.27	11.4	6.6	2.2	1	1	1	2	2	2	0	Fibrinogen	alpha/beta	chain	family
DUF3138	PF11336.8	gi|408403896|ref|YP_006861879.1|	-	0.29	9.7	5.9	0.46	9.0	5.9	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3138)
DUF812	PF05667.11	gi|408403896|ref|YP_006861879.1|	-	0.31	9.9	11.9	0.45	9.3	11.9	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF812)
V_ATPase_I	PF01496.19	gi|408403896|ref|YP_006861879.1|	-	0.34	8.8	4.7	0.44	8.4	4.7	1.1	1	0	0	1	1	1	0	V-type	ATPase	116kDa	subunit	family
HOOK	PF05622.12	gi|408403896|ref|YP_006861879.1|	-	0.44	8.6	15.1	0.6	8.2	15.1	1.1	1	0	0	1	1	1	0	HOOK	protein
Med9	PF07544.13	gi|408403896|ref|YP_006861879.1|	-	0.54	10.4	17.0	0.22	11.6	8.9	2.7	1	1	1	2	2	2	0	RNA	polymerase	II	transcription	mediator	complex	subunit	9
HemX	PF04375.14	gi|408403896|ref|YP_006861879.1|	-	0.67	9.2	21.5	5.3	6.2	21.5	1.9	1	1	0	1	1	1	0	HemX,	putative	uroporphyrinogen-III	C-methyltransferase
Phage_GPO	PF05929.11	gi|408403896|ref|YP_006861879.1|	-	0.82	9.2	7.8	1.4	8.5	7.8	1.4	1	0	0	1	1	1	0	Phage	capsid	scaffolding	protein	(GPO)	serine	peptidase
YlqD	PF11068.8	gi|408403896|ref|YP_006861879.1|	-	0.88	9.9	20.4	0.76	10.2	12.3	2.1	1	1	1	2	2	2	0	YlqD	protein
DUF724	PF05266.14	gi|408403896|ref|YP_006861879.1|	-	1.1	9.1	10.4	0.52	10.1	6.2	1.8	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF724)
TMPIT	PF07851.13	gi|408403896|ref|YP_006861879.1|	-	1.2	8.3	7.0	1.7	7.8	7.0	1.3	1	0	0	1	1	1	0	TMPIT-like	protein
UPF0242	PF06785.11	gi|408403896|ref|YP_006861879.1|	-	1.3	9.0	17.3	2.9	7.9	17.3	1.5	1	1	0	1	1	1	0	Uncharacterised	protein	family	(UPF0242)	N-terminus
FAM76	PF16046.5	gi|408403896|ref|YP_006861879.1|	-	1.4	8.2	11.1	7.7	5.8	10.8	1.8	1	1	0	1	1	1	0	FAM76	protein
DUF641	PF04859.12	gi|408403896|ref|YP_006861879.1|	-	1.4	9.3	11.6	3.8	7.9	3.4	2.2	1	1	1	2	2	2	0	Plant	protein	of	unknown	function	(DUF641)
Csm1_N	PF18504.1	gi|408403896|ref|YP_006861879.1|	-	1.5	9.2	17.3	0.085	13.2	4.4	3.2	1	1	2	3	3	3	0	Csm1	N-terminal	domain
ERM	PF00769.19	gi|408403896|ref|YP_006861879.1|	-	1.7	8.4	14.9	2.8	7.7	14.9	1.3	1	0	0	1	1	1	0	Ezrin/radixin/moesin	family
CENP-Q	PF13094.6	gi|408403896|ref|YP_006861879.1|	-	2	8.6	17.0	2.1	8.6	2.1	2.6	1	1	1	2	2	2	0	CENP-Q,	a	CENPA-CAD	centromere	complex	subunit
GrpE	PF01025.19	gi|408403896|ref|YP_006861879.1|	-	2.2	7.9	13.6	1.8	8.2	4.1	2.3	1	1	1	2	2	2	0	GrpE
TMF_TATA_bd	PF12325.8	gi|408403896|ref|YP_006861879.1|	-	2.4	8.4	15.3	0.62	10.3	6.4	2.3	1	1	1	2	2	2	0	TATA	element	modulatory	factor	1	TATA	binding
Tropomyosin_1	PF12718.7	gi|408403896|ref|YP_006861879.1|	-	3	8.0	17.1	0.24	11.6	4.6	2.2	1	1	1	2	2	2	0	Tropomyosin	like
MPS2	PF17060.5	gi|408403896|ref|YP_006861879.1|	-	3.3	6.9	9.6	7.9	5.6	9.6	1.5	1	1	0	1	1	1	0	Monopolar	spindle	protein	2
BLOC1_2	PF10046.9	gi|408403896|ref|YP_006861879.1|	-	3.4	8.0	15.5	3.4	8.0	2.6	2.4	1	1	1	2	2	2	0	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
HMMR_N	PF15905.5	gi|408403896|ref|YP_006861879.1|	-	3.7	6.9	17.2	13	5.1	17.3	1.7	1	1	0	1	1	1	0	Hyaluronan	mediated	motility	receptor	N-terminal
FlaC_arch	PF05377.11	gi|408403896|ref|YP_006861879.1|	-	3.8	8.0	9.3	3.9	7.9	1.3	2.9	1	1	2	3	3	2	0	Flagella	accessory	protein	C	(FlaC)
DUF4200	PF13863.6	gi|408403896|ref|YP_006861879.1|	-	3.8	7.9	16.7	68	3.9	16.7	2.5	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4200)
PspA_IM30	PF04012.12	gi|408403896|ref|YP_006861879.1|	-	4	7.0	20.3	20	4.7	20.3	1.8	1	1	0	1	1	1	0	PspA/IM30	family
LPP	PF04728.13	gi|408403896|ref|YP_006861879.1|	-	4.9	7.6	11.4	7.4	7.1	4.0	2.8	1	1	1	2	2	2	0	Lipoprotein	leucine-zipper
DUF4763	PF15960.5	gi|408403896|ref|YP_006861879.1|	-	5.5	6.2	14.7	13	5.0	14.6	1.5	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4763)
DHR10	PF18595.1	gi|408403896|ref|YP_006861879.1|	-	6	6.9	21.6	18	5.4	9.3	2.1	1	1	1	2	2	2	0	Designed	helical	repeat	protein	10	domain
CC2-LZ	PF16516.5	gi|408403896|ref|YP_006861879.1|	-	6.5	7.2	17.8	1.4e+02	2.9	0.6	3.0	1	1	1	2	2	2	0	Leucine	zipper	of	domain	CC2	of	NEMO,	NF-kappa-B	essential	modulator
HAUS-augmin3	PF14932.6	gi|408403896|ref|YP_006861879.1|	-	8.1	5.9	16.4	12	5.4	16.4	1.2	1	0	0	1	1	1	0	HAUS	augmin-like	complex	subunit	3
DUF948	PF06103.11	gi|408403896|ref|YP_006861879.1|	-	8.3	6.8	9.5	4.6	7.6	6.1	2.2	1	1	1	2	2	2	0	Bacterial	protein	of	unknown	function	(DUF948)
DUF16	PF01519.16	gi|408403896|ref|YP_006861879.1|	-	8.7	6.9	16.1	8.2e+02	0.5	16.1	2.6	1	1	0	1	1	1	0	Protein	of	unknown	function	DUF16
DUF4140	PF13600.6	gi|408403896|ref|YP_006861879.1|	-	9	6.8	15.6	46	4.5	14.1	2.8	2	1	0	2	2	1	0	N-terminal	domain	of	unknown	function	(DUF4140)
Flavin_Reduct	PF01613.18	gi|408403898|ref|YP_006861881.1|	-	4.6e-25	88.5	0.0	7.3e-25	87.8	0.0	1.3	1	0	0	1	1	1	1	Flavin	reductase	like	domain
DUF447	PF04289.12	gi|408403898|ref|YP_006861881.1|	-	0.094	12.5	0.0	0.29	10.9	0.0	1.7	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF447)
Aminotran_3	PF00202.21	gi|408403899|ref|YP_006861882.1|	-	3.5e-54	184.0	0.0	5.4e-54	183.4	0.0	1.2	1	0	0	1	1	1	1	Aminotransferase	class-III
YjgF_endoribonc	PF14588.6	gi|408403903|ref|YP_006861886.1|	-	7.4e-40	136.5	0.0	8.2e-40	136.4	0.0	1.0	1	0	0	1	1	1	1	YjgF/chorismate_mutase-like,	putative	endoribonuclease
Ribonuc_L-PSP	PF01042.21	gi|408403903|ref|YP_006861886.1|	-	7.1e-20	71.2	0.0	9.2e-20	70.9	0.0	1.1	1	0	0	1	1	1	1	Endoribonuclease	L-PSP
DHHA1	PF02272.19	gi|408403904|ref|YP_006861887.1|	-	7.5e-17	62.0	1.0	1.7e-16	60.9	0.4	1.8	2	0	0	2	2	2	1	DHHA1	domain
DHH	PF01368.20	gi|408403904|ref|YP_006861887.1|	-	6.9e-05	23.0	1.4	0.00012	22.3	0.5	1.8	2	0	0	2	2	2	1	DHH	family
HMGL-like	PF00682.19	gi|408403904|ref|YP_006861887.1|	-	0.0033	17.0	0.4	0.007	16.0	0.2	1.5	1	1	0	1	1	1	1	HMGL-like
RICTOR_V	PF14668.6	gi|408403904|ref|YP_006861887.1|	-	0.021	15.1	0.3	0.22	11.8	0.1	2.6	2	0	0	2	2	2	0	Rapamycin-insensitive	companion	of	mTOR,	domain	5
Goodbye	PF17109.5	gi|408403904|ref|YP_006861887.1|	-	0.035	14.5	0.4	25	5.3	0.0	3.3	3	0	0	3	3	3	0	fungal	STAND	N-terminal	Goodbye	domain
TMEM151	PF14857.6	gi|408403904|ref|YP_006861887.1|	-	0.051	12.5	0.0	0.078	11.9	0.0	1.2	1	0	0	1	1	1	0	TMEM151	family
Thioredox_DsbH	PF03190.15	gi|408403905|ref|YP_006861888.1|	-	3.6e-76	254.7	0.0	9.3e-76	253.3	0.0	1.7	2	0	0	2	2	2	1	Protein	of	unknown	function,	DUF255
Glyco_hydro_88	PF07470.13	gi|408403905|ref|YP_006861888.1|	-	1.3e-11	44.2	2.4	4.5e-05	22.7	0.0	3.4	2	1	1	3	3	3	2	Glycosyl	Hydrolase	Family	88
Thioredoxin_7	PF13899.6	gi|408403905|ref|YP_006861888.1|	-	2.9e-11	43.4	0.0	6.9e-11	42.2	0.0	1.7	1	0	0	1	1	1	1	Thioredoxin-like
Glyco_hydro_76	PF03663.14	gi|408403905|ref|YP_006861888.1|	-	2e-09	37.5	3.4	0.0099	15.4	0.8	3.8	2	1	1	3	3	3	3	Glycosyl	hydrolase	family	76
C5-epim_C	PF06662.13	gi|408403905|ref|YP_006861888.1|	-	4.2e-09	36.2	6.5	0.00037	20.0	0.2	3.9	4	0	0	4	4	4	3	D-glucuronyl	C5-epimerase	C-terminus
Glyco_hydro_127	PF07944.12	gi|408403905|ref|YP_006861888.1|	-	0.00017	20.2	2.2	0.012	14.1	0.3	3.0	2	1	1	3	3	3	2	Beta-L-arabinofuranosidase,	GH127
GlcNAc_2-epim	PF07221.11	gi|408403905|ref|YP_006861888.1|	-	0.0027	17.0	0.4	2.2	7.4	0.0	3.1	2	1	1	3	3	3	2	N-acylglucosamine	2-epimerase	(GlcNAc	2-epimerase)
Thioredoxin_2	PF13098.6	gi|408403905|ref|YP_006861888.1|	-	0.012	16.0	0.0	0.029	14.8	0.0	1.7	1	0	0	1	1	1	0	Thioredoxin-like	domain
LANC_like	PF05147.13	gi|408403905|ref|YP_006861888.1|	-	0.016	13.8	1.5	3.4	6.1	0.0	2.8	2	1	0	2	2	2	0	Lanthionine	synthetase	C-like	protein
Pec_lyase	PF09492.10	gi|408403905|ref|YP_006861888.1|	-	0.13	11.5	0.6	2.8	7.2	0.1	2.4	2	0	0	2	2	2	0	Pectic	acid	lyase
PMBR	PF09373.10	gi|408403905|ref|YP_006861888.1|	-	0.14	12.3	0.8	9.5	6.6	0.0	3.2	4	0	0	4	4	2	0	Pseudomurein-binding	repeat
Arcadin_1	PF18653.1	gi|408403906|ref|YP_006861889.1|	-	0.0078	16.3	0.9	0.0087	16.1	0.9	1.1	1	0	0	1	1	1	1	Arcadin	1
KdpD	PF02702.17	gi|408403906|ref|YP_006861889.1|	-	0.022	14.2	0.4	0.027	13.9	0.4	1.0	1	0	0	1	1	1	0	Osmosensitive	K+	channel	His	kinase	sensor	domain
Pyridox_ox_2	PF12900.7	gi|408403908|ref|YP_006861891.1|	-	8.4e-23	80.9	0.0	1e-22	80.7	0.0	1.1	1	0	0	1	1	1	1	Pyridoxamine	5'-phosphate	oxidase
Putative_PNPOx	PF01243.20	gi|408403908|ref|YP_006861891.1|	-	1.1e-15	57.6	0.0	2.7e-15	56.3	0.0	1.7	1	1	0	1	1	1	1	Pyridoxamine	5'-phosphate	oxidase
FMN_bind_2	PF04299.12	gi|408403908|ref|YP_006861891.1|	-	1.3e-06	28.3	0.0	1.6e-06	28.0	0.0	1.2	1	0	0	1	1	1	1	Putative	FMN-binding	domain
Pyrid_ox_like	PF16242.5	gi|408403908|ref|YP_006861891.1|	-	0.00025	20.7	0.0	0.069	12.7	0.0	2.2	2	0	0	2	2	2	2	Pyridoxamine	5'-phosphate	oxidase	like
ParD_antitoxin	PF03693.14	gi|408403908|ref|YP_006861891.1|	-	0.12	12.8	0.1	0.22	12.0	0.1	1.3	1	0	0	1	1	1	0	Bacterial	antitoxin	of	ParD	toxin-antitoxin	type	II	system	and	RHH
DUF1018	PF06252.12	gi|408403909|ref|YP_006861892.1|	-	0.041	14.9	0.2	0.045	14.7	0.2	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1018)
HTH_45	PF14947.6	gi|408403910|ref|YP_006861893.1|	-	4.9e-17	61.7	1.1	5.3e-17	61.6	1.1	1.0	1	0	0	1	1	1	1	Winged	helix-turn-helix
DUF4364	PF14277.6	gi|408403910|ref|YP_006861893.1|	-	0.00016	21.5	0.2	0.00018	21.3	0.2	1.0	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4364)
HTH_45	PF14947.6	gi|408403912|ref|YP_006861895.1|	-	3.2e-09	36.6	0.0	3.7e-09	36.4	0.0	1.0	1	0	0	1	1	1	1	Winged	helix-turn-helix
HTH_5	PF01022.20	gi|408403912|ref|YP_006861895.1|	-	0.0018	18.1	0.0	0.0024	17.7	0.0	1.2	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
MarR	PF01047.22	gi|408403912|ref|YP_006861895.1|	-	0.0025	17.7	0.0	0.0035	17.2	0.0	1.3	1	0	0	1	1	1	1	MarR	family
TrmB	PF01978.19	gi|408403912|ref|YP_006861895.1|	-	0.005	16.7	0.0	0.0067	16.3	0.0	1.1	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_24	PF13412.6	gi|408403912|ref|YP_006861895.1|	-	0.016	14.8	0.0	0.022	14.3	0.0	1.2	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
MarR_2	PF12802.7	gi|408403912|ref|YP_006861895.1|	-	0.03	14.2	0.0	0.043	13.7	0.0	1.2	1	0	0	1	1	1	0	MarR	family
Rrf2	PF02082.20	gi|408403912|ref|YP_006861895.1|	-	0.034	14.5	0.0	0.044	14.1	0.0	1.1	1	0	0	1	1	1	0	Transcriptional	regulator
FeoC	PF09012.10	gi|408403912|ref|YP_006861895.1|	-	0.037	14.1	0.0	0.046	13.8	0.0	1.1	1	0	0	1	1	1	0	FeoC	like	transcriptional	regulator
PadR	PF03551.14	gi|408403913|ref|YP_006861896.1|	-	1.5e-07	31.3	0.0	7.2e-07	29.1	0.0	2.2	2	1	1	3	3	3	1	Transcriptional	regulator	PadR-like	family
HTH_45	PF14947.6	gi|408403913|ref|YP_006861896.1|	-	7.5e-05	22.6	0.0	0.00018	21.4	0.0	1.7	1	0	0	1	1	1	1	Winged	helix-turn-helix
DUF1104	PF06518.11	gi|408403913|ref|YP_006861896.1|	-	0.0097	16.3	0.5	0.017	15.5	0.5	1.4	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1104)
DUF4364	PF14277.6	gi|408403913|ref|YP_006861896.1|	-	0.017	14.9	0.5	0.083	12.6	0.0	2.0	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4364)
Hemocyanin_M	PF00372.19	gi|408403913|ref|YP_006861896.1|	-	0.02	14.1	0.1	0.024	13.8	0.1	1.1	1	0	0	1	1	1	0	Hemocyanin,	copper	containing	domain
Mrr_N	PF14338.6	gi|408403913|ref|YP_006861896.1|	-	0.064	13.4	0.5	0.25	11.5	0.0	2.0	2	0	0	2	2	2	0	Mrr	N-terminal	domain
DUF1673	PF07895.11	gi|408403914|ref|YP_006861897.1|	-	0.046	13.4	0.0	0.051	13.3	0.0	1.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1673)
Na_H_Exchanger	PF00999.21	gi|408403915|ref|YP_006861898.1|	-	5.6e-64	216.3	50.7	6.6e-64	216.1	50.7	1.0	1	0	0	1	1	1	1	Sodium/hydrogen	exchanger	family
Response_reg	PF00072.24	gi|408403917|ref|YP_006861900.1|	-	4.2e-21	75.2	0.1	4.7e-21	75.1	0.1	1.0	1	0	0	1	1	1	1	Response	regulator	receiver	domain
FTCD_C	PF04961.12	gi|408403917|ref|YP_006861900.1|	-	0.057	13.2	0.0	0.061	13.1	0.0	1.1	1	0	0	1	1	1	0	Formiminotransferase-cyclodeaminase
Cation_efflux	PF01545.21	gi|408403918|ref|YP_006861901.1|	-	2.5e-35	122.1	18.2	2.8e-35	121.8	18.2	1.0	1	0	0	1	1	1	1	Cation	efflux	family
ZT_dimer	PF16916.5	gi|408403918|ref|YP_006861901.1|	-	6e-10	39.1	0.3	1.3e-09	38.0	0.3	1.5	1	0	0	1	1	1	1	Dimerisation	domain	of	Zinc	Transporter
Ribosomal_S30AE	PF02482.19	gi|408403918|ref|YP_006861901.1|	-	0.043	14.6	0.4	0.18	12.6	0.1	2.0	2	0	0	2	2	2	0	Sigma	54	modulation	protein	/	S30EA	ribosomal	protein
Cation_ATPase_C	PF00689.21	gi|408403918|ref|YP_006861901.1|	-	0.082	12.6	5.7	0.047	13.4	2.9	1.9	2	0	0	2	2	2	0	Cation	transporting	ATPase,	C-terminus
IncD	PF17628.2	gi|408403920|ref|YP_006861903.1|	-	3.7	7.3	9.0	1.4	8.7	3.8	2.7	2	1	0	2	2	2	0	Inclusion	membrane	protein	D
TatC	PF00902.18	gi|408403922|ref|YP_006861905.1|	-	0.0082	16.0	1.5	0.0088	15.9	1.5	1.1	1	0	0	1	1	1	1	Sec-independent	protein	translocase	protein	(TatC)
Thioredoxin_4	PF13462.6	gi|408403924|ref|YP_006861907.1|	-	1.5e-29	103.3	0.0	2.6e-29	102.5	0.0	1.3	2	0	0	2	2	2	1	Thioredoxin
DSBA	PF01323.20	gi|408403924|ref|YP_006861907.1|	-	1.5e-14	54.2	0.0	8e-13	48.6	0.0	2.2	1	1	0	1	1	1	1	DSBA-like	thioredoxin	domain
Thioredoxin_2	PF13098.6	gi|408403924|ref|YP_006861907.1|	-	1.6e-07	31.8	0.0	2.8e-07	31.0	0.0	1.4	1	0	0	1	1	1	1	Thioredoxin-like	domain
Spc7	PF08317.11	gi|408403925|ref|YP_006861908.1|	-	1.8e-06	27.1	33.2	0.00068	18.6	7.4	3.1	2	1	1	3	3	3	2	Spc7	kinetochore	protein
DUF948	PF06103.11	gi|408403925|ref|YP_006861908.1|	-	0.00026	21.2	13.6	0.86	9.9	0.2	5.9	4	1	3	7	7	7	1	Bacterial	protein	of	unknown	function	(DUF948)
Filament	PF00038.21	gi|408403925|ref|YP_006861908.1|	-	0.014	15.0	28.5	0.042	13.4	2.4	3.7	1	1	2	3	3	3	0	Intermediate	filament	protein
Allexi_40kDa	PF05549.11	gi|408403925|ref|YP_006861908.1|	-	0.019	14.5	0.6	0.019	14.5	0.6	3.7	1	1	3	4	4	4	0	Allexivirus	40kDa	protein
Bacillus_HBL	PF05791.11	gi|408403925|ref|YP_006861908.1|	-	0.025	14.4	14.8	3.2	7.6	0.5	4.6	3	2	1	4	4	4	0	Bacillus	haemolytic	enterotoxin	(HBL)
DUF2203	PF09969.9	gi|408403925|ref|YP_006861908.1|	-	0.032	15.0	23.4	0.58	10.9	1.5	4.8	1	1	4	5	5	5	0	Uncharacterized	conserved	protein	(DUF2203)
Semialdhyde_dhC	PF02774.18	gi|408403925|ref|YP_006861908.1|	-	0.055	13.5	1.3	0.31	11.1	0.3	2.5	2	1	1	3	3	3	0	Semialdehyde	dehydrogenase,	dimerisation	domain
APG6_N	PF17675.1	gi|408403925|ref|YP_006861908.1|	-	0.089	13.3	31.1	0.057	13.9	3.9	3.8	3	1	0	4	4	4	0	Apg6	coiled-coil	region
DUF4988	PF16378.5	gi|408403925|ref|YP_006861908.1|	-	0.15	11.7	3.4	4.7	6.8	0.0	3.3	3	0	0	3	3	3	0	Domain	of	unknown	function
Cob_adeno_trans	PF01923.18	gi|408403925|ref|YP_006861908.1|	-	0.2	11.8	11.7	0.019	15.1	2.1	3.5	1	1	3	4	4	4	0	Cobalamin	adenosyltransferase
Baculo_PEP_C	PF04513.12	gi|408403925|ref|YP_006861908.1|	-	0.24	11.4	12.8	0.23	11.5	1.2	4.7	2	1	3	5	5	5	0	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
DUF848	PF05852.11	gi|408403925|ref|YP_006861908.1|	-	0.25	11.5	16.3	0.28	11.3	0.8	3.3	3	1	1	4	4	4	0	Gammaherpesvirus	protein	of	unknown	function	(DUF848)
DUF1664	PF07889.12	gi|408403925|ref|YP_006861908.1|	-	0.43	10.6	19.9	3.4	7.7	2.1	5.2	3	2	2	5	5	5	0	Protein	of	unknown	function	(DUF1664)
Peptidase_C10	PF01640.17	gi|408403925|ref|YP_006861908.1|	-	0.48	10.7	1.6	24	5.2	0.1	2.3	2	0	0	2	2	2	0	Peptidase	C10	family
Sec8_exocyst	PF04048.14	gi|408403925|ref|YP_006861908.1|	-	0.49	10.3	18.0	0.48	10.3	0.2	4.4	2	1	3	5	5	5	0	Sec8	exocyst	complex	component	specific	domain
AAA_23	PF13476.6	gi|408403925|ref|YP_006861908.1|	-	0.55	10.7	19.9	1.5	9.3	7.7	2.4	2	0	0	2	2	2	0	AAA	domain
DUF2313	PF10076.9	gi|408403925|ref|YP_006861908.1|	-	0.66	9.8	5.0	8.9	6.1	0.0	3.5	1	1	0	3	3	3	0	Uncharacterised	protein	conserved	in	bacteria	(DUF2313)
Fib_alpha	PF08702.10	gi|408403925|ref|YP_006861908.1|	-	0.77	9.9	20.0	4	7.6	4.8	4.2	2	1	2	4	4	4	0	Fibrinogen	alpha/beta	chain	family
WXG100	PF06013.12	gi|408403925|ref|YP_006861908.1|	-	0.78	10.0	20.6	0.21	11.8	1.4	6.0	5	3	0	5	5	4	0	Proteins	of	100	residues	with	WXG
YojJ	PF10372.9	gi|408403925|ref|YP_006861908.1|	-	0.87	9.7	12.5	2.6	8.2	0.2	5.4	6	0	0	6	6	5	0	Bacterial	membrane-spanning	protein	N-terminus
ADIP	PF11559.8	gi|408403925|ref|YP_006861908.1|	-	1.1	9.4	23.1	0.99	9.5	5.4	4.0	2	2	0	3	3	3	0	Afadin-	and	alpha	-actinin-Binding
FliJ	PF02050.16	gi|408403925|ref|YP_006861908.1|	-	1.6	9.0	24.8	0.82	9.9	2.5	4.6	1	1	3	5	5	5	0	Flagellar	FliJ	protein
TPR_MLP1_2	PF07926.12	gi|408403925|ref|YP_006861908.1|	-	3.5	7.7	33.7	0.2	11.7	4.8	4.7	2	1	3	5	5	5	0	TPR/MLP1/MLP2-like	protein
FlaC_arch	PF05377.11	gi|408403925|ref|YP_006861908.1|	-	4	7.9	18.2	2.4	8.6	0.1	5.9	6	2	1	7	7	6	0	Flagella	accessory	protein	C	(FlaC)
DHR10	PF18595.1	gi|408403925|ref|YP_006861908.1|	-	4.6	7.3	35.8	0.33	11.0	5.3	4.3	3	1	1	4	4	4	0	Designed	helical	repeat	protein	10	domain
FUSC	PF04632.12	gi|408403925|ref|YP_006861908.1|	-	5.2	5.5	14.7	1.5	7.2	2.0	2.7	1	1	2	3	3	3	0	Fusaric	acid	resistance	protein	family
DUF2408	PF10303.9	gi|408403925|ref|YP_006861908.1|	-	5.5	7.6	22.7	3.8	8.1	7.9	4.2	1	1	2	3	3	3	0	Protein	of	unknown	function	(DUF2408)
Tweety	PF04906.13	gi|408403925|ref|YP_006861908.1|	-	5.6	5.5	7.6	0.22	10.2	0.3	2.3	3	1	0	3	3	3	0	Tweety
Fez1	PF06818.15	gi|408403925|ref|YP_006861908.1|	-	5.9	7.3	28.1	4.5	7.7	6.7	3.3	1	1	1	3	3	3	0	Fez1
DUF5082	PF16888.5	gi|408403925|ref|YP_006861908.1|	-	6.7	7.0	14.4	0.13	12.5	0.8	3.6	3	1	0	4	4	3	0	Domain	of	unknown	function	(DUF5082)
TMPIT	PF07851.13	gi|408403925|ref|YP_006861908.1|	-	6.7	5.9	24.6	0.34	10.1	1.0	4.4	1	1	5	6	6	6	0	TMPIT-like	protein
TMF_TATA_bd	PF12325.8	gi|408403925|ref|YP_006861908.1|	-	7.4	6.8	31.6	0.11	12.7	2.6	5.3	2	2	4	6	6	6	0	TATA	element	modulatory	factor	1	TATA	binding
Tup_N	PF08581.10	gi|408403925|ref|YP_006861908.1|	-	7.6	6.9	18.6	2.6	8.4	0.8	4.9	4	2	0	5	5	3	0	Tup	N-terminal
FapA	PF03961.13	gi|408403925|ref|YP_006861908.1|	-	9.7	4.7	22.1	0.058	12.0	5.4	3.0	1	1	2	3	3	3	0	Flagellar	Assembly	Protein	A
Deltameth_res	PF16020.5	gi|408403926|ref|YP_006861909.1|	-	0.067	13.1	0.1	0.25	11.2	0.1	2.0	1	0	0	1	1	1	0	Deltamethrin	resistance
FUN14	PF04930.15	gi|408403927|ref|YP_006861910.1|	-	1.2e-19	70.5	7.6	1.5e-19	70.2	7.6	1.1	1	0	0	1	1	1	1	FUN14	family
SPC12	PF06645.13	gi|408403927|ref|YP_006861910.1|	-	0.63	10.2	7.5	0.72	10.0	4.1	2.2	2	0	0	2	2	2	0	Microsomal	signal	peptidase	12	kDa	subunit	(SPC12)
RVT_3	PF13456.6	gi|408403928|ref|YP_006861911.1|	-	1.7e-17	63.3	0.0	1.8e-17	63.3	0.0	1.1	1	0	0	1	1	1	1	Reverse	transcriptase-like
RNase_H	PF00075.24	gi|408403928|ref|YP_006861911.1|	-	2.9e-08	34.0	0.0	4.6e-08	33.3	0.0	1.4	1	1	0	1	1	1	1	RNase	H
DM13	PF10517.9	gi|408403929|ref|YP_006861912.1|	-	2.9e-19	69.6	0.0	4e-19	69.1	0.0	1.2	1	0	0	1	1	1	1	Electron	transfer	DM13
MFS_1	PF07690.16	gi|408403930|ref|YP_006861913.1|	-	0.012	14.5	0.6	0.012	14.5	0.6	1.0	1	0	0	1	1	1	0	Major	Facilitator	Superfamily
SLAC1	PF03595.17	gi|408403932|ref|YP_006861915.1|	-	0.025	13.8	3.3	0.04	13.2	3.3	1.3	1	0	0	1	1	1	0	Voltage-dependent	anion	channel
DUF3054	PF11255.8	gi|408403932|ref|YP_006861915.1|	-	0.061	13.8	1.2	0.068	13.7	1.2	1.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3054)
HisK_N	PF09385.10	gi|408403933|ref|YP_006861916.1|	-	0.037	14.0	0.2	0.045	13.7	0.2	1.2	1	0	0	1	1	1	0	Histidine	kinase	N	terminal
zf-CCHC_4	PF14392.6	gi|408403933|ref|YP_006861916.1|	-	0.12	12.1	0.1	0.23	11.2	0.1	1.4	1	0	0	1	1	1	0	Zinc	knuckle
TetR_N	PF00440.23	gi|408403934|ref|YP_006861917.1|	-	2.6e-20	71.9	0.3	1.3e-19	69.7	0.2	2.0	2	0	0	2	2	2	1	Bacterial	regulatory	proteins,	tetR	family
TetR_C_6	PF13977.6	gi|408403934|ref|YP_006861917.1|	-	1.8e-12	47.5	0.0	3.8e-12	46.4	0.0	1.5	1	0	0	1	1	1	1	BetI-type	transcriptional	repressor,	C-terminal
TetR_C_11	PF16859.5	gi|408403934|ref|YP_006861917.1|	-	5.8e-05	23.4	0.2	9.3e-05	22.7	0.2	1.3	1	0	0	1	1	1	1	Tetracyclin	repressor-like,	C-terminal	domain
TetR_C_31	PF17940.1	gi|408403934|ref|YP_006861917.1|	-	0.00078	19.6	0.1	0.0016	18.6	0.1	1.5	1	1	0	1	1	1	1	Tetracyclin	repressor-like,	C-terminal	domain
TetR_C_7	PF14246.6	gi|408403934|ref|YP_006861917.1|	-	0.0015	18.5	0.4	0.0032	17.5	0.1	1.7	2	0	0	2	2	2	1	AefR-like	transcriptional	repressor,	C-terminal	domain
HTH_36	PF13730.6	gi|408403934|ref|YP_006861917.1|	-	0.011	15.7	0.0	0.035	14.1	0.0	1.8	2	0	0	2	2	2	0	Helix-turn-helix	domain
HTH_22	PF13309.6	gi|408403934|ref|YP_006861917.1|	-	0.012	15.7	0.0	0.048	13.7	0.0	2.1	1	0	0	1	1	1	0	HTH	domain
HTH_24	PF13412.6	gi|408403934|ref|YP_006861917.1|	-	0.024	14.2	0.0	0.064	12.8	0.0	1.7	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
HTH_23	PF13384.6	gi|408403934|ref|YP_006861917.1|	-	0.029	14.2	0.1	0.073	12.9	0.0	1.8	2	0	0	2	2	1	0	Homeodomain-like	domain
HTH_Tnp_1_2	PF13022.6	gi|408403934|ref|YP_006861917.1|	-	0.04	14.1	0.4	0.2	11.8	0.0	2.2	2	1	1	3	3	3	0	Helix-turn-helix	of	insertion	element	transposase
TetR_C_17	PF17922.1	gi|408403934|ref|YP_006861917.1|	-	0.047	13.8	0.1	0.13	12.4	0.0	1.7	3	0	0	3	3	2	0	Tetracyclin	repressor-like,	C-terminal	domain
UBA_3	PF09288.10	gi|408403934|ref|YP_006861917.1|	-	0.052	13.4	0.0	0.14	12.0	0.0	1.7	1	0	0	1	1	1	0	Fungal	ubiquitin-associated	domain
TetR_C_29	PF17938.1	gi|408403934|ref|YP_006861917.1|	-	0.059	13.5	0.2	0.13	12.3	0.1	1.7	2	0	0	2	2	2	0	Tetracyclin	repressor-like,	C-terminal	domain
HTH_AsnC-type	PF13404.6	gi|408403934|ref|YP_006861917.1|	-	0.099	12.5	0.0	0.28	11.1	0.0	1.7	1	0	0	1	1	1	0	AsnC-type	helix-turn-helix	domain
HTH_7	PF02796.15	gi|408403934|ref|YP_006861917.1|	-	0.1	12.7	0.0	0.33	11.1	0.0	1.9	1	0	0	1	1	1	0	Helix-turn-helix	domain	of	resolvase
HTH_17	PF12728.7	gi|408403934|ref|YP_006861917.1|	-	0.12	12.6	0.0	0.41	10.9	0.0	1.9	2	0	0	2	2	1	0	Helix-turn-helix	domain
Pro_isomerase	PF00160.21	gi|408403935|ref|YP_006861918.1|	-	2.4e-53	180.6	0.1	2.7e-53	180.5	0.1	1.0	1	0	0	1	1	1	1	Cyclophilin	type	peptidyl-prolyl	cis-trans	isomerase/CLD
HTH_45	PF14947.6	gi|408403936|ref|YP_006861919.1|	-	2.4e-15	56.3	0.5	2.7e-15	56.1	0.5	1.0	1	0	0	1	1	1	1	Winged	helix-turn-helix
RNA_pol_Rpc34	PF05158.12	gi|408403936|ref|YP_006861919.1|	-	0.015	14.7	0.1	0.017	14.5	0.1	1.1	1	0	0	1	1	1	0	RNA	polymerase	Rpc34	subunit
Rio2_N	PF09202.11	gi|408403936|ref|YP_006861919.1|	-	0.035	14.3	0.4	0.047	13.9	0.4	1.1	1	0	0	1	1	1	0	Rio2,	N-terminal
Methyltransf_33	PF10017.9	gi|408403936|ref|YP_006861919.1|	-	0.036	13.2	0.1	0.041	13.0	0.1	1.0	1	0	0	1	1	1	0	Histidine-specific	methyltransferase,	SAM-dependent
Gmx_para_CXXCG	PF09535.10	gi|408403939|ref|YP_006861922.1|	-	0.004	16.4	0.2	0.0045	16.3	0.2	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(Gmx_para_CXXCG)
IMS	PF00817.20	gi|408403940|ref|YP_006861923.1|	-	7.8e-43	146.0	0.3	1.4e-42	145.2	0.3	1.4	1	0	0	1	1	1	1	impB/mucB/samB	family
DUF72	PF01904.18	gi|408403940|ref|YP_006861923.1|	-	7.2e-23	81.8	0.0	1.5e-22	80.8	0.0	1.5	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF72
IMS_C	PF11799.8	gi|408403940|ref|YP_006861923.1|	-	1.1e-12	48.7	0.2	2.8e-12	47.3	0.2	1.7	1	0	0	1	1	1	1	impB/mucB/samB	family	C-terminal	domain
HHH_5	PF14520.6	gi|408403940|ref|YP_006861923.1|	-	0.00027	21.5	0.0	0.00077	20.0	0.0	1.7	1	0	0	1	1	1	1	Helix-hairpin-helix	domain
IMS_HHH	PF11798.8	gi|408403940|ref|YP_006861923.1|	-	0.0011	19.2	0.1	0.0027	17.9	0.1	1.7	1	0	0	1	1	1	1	IMS	family	HHH	motif
DUF4332	PF14229.6	gi|408403940|ref|YP_006861923.1|	-	0.0033	17.7	0.0	0.0096	16.2	0.0	1.8	1	1	0	1	1	1	1	Domain	of	unknown	function	(DUF4332)
DUF2182	PF09948.9	gi|408403941|ref|YP_006861924.1|	-	1e-60	204.9	20.4	1.3e-60	204.6	20.4	1.1	1	0	0	1	1	1	1	Predicted	metal-binding	integral	membrane	protein	(DUF2182)
PRA1	PF03208.19	gi|408403941|ref|YP_006861924.1|	-	0.42	10.2	7.4	0.35	10.5	1.0	2.2	1	1	1	2	2	2	0	PRA1	family	protein
Methyltransf_2	PF00891.18	gi|408403943|ref|YP_006861926.1|	-	4.9e-34	117.5	0.0	6.5e-34	117.1	0.0	1.1	1	0	0	1	1	1	1	O-methyltransferase	domain
Dimerisation2	PF16864.5	gi|408403943|ref|YP_006861926.1|	-	2e-13	50.1	0.0	4.3e-13	49.0	0.0	1.6	1	0	0	1	1	1	1	Dimerisation	domain
Methyltransf_12	PF08242.12	gi|408403943|ref|YP_006861926.1|	-	4.5e-06	27.3	0.0	8.4e-06	26.5	0.0	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.6	gi|408403943|ref|YP_006861926.1|	-	4.7e-06	26.5	0.0	6.4e-06	26.1	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.6	gi|408403943|ref|YP_006861926.1|	-	0.00029	21.5	0.0	0.00064	20.4	0.0	1.6	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_16	PF10294.9	gi|408403943|ref|YP_006861926.1|	-	0.00059	19.6	0.0	0.001	18.9	0.0	1.3	1	0	0	1	1	1	1	Lysine	methyltransferase
PrmA	PF06325.13	gi|408403943|ref|YP_006861926.1|	-	0.033	13.6	0.0	0.052	12.9	0.0	1.2	1	0	0	1	1	1	0	Ribosomal	protein	L11	methyltransferase	(PrmA)
Methyltransf_31	PF13847.6	gi|408403943|ref|YP_006861926.1|	-	0.04	13.7	0.0	0.086	12.6	0.0	1.5	1	0	0	1	1	1	0	Methyltransferase	domain
MTS	PF05175.14	gi|408403943|ref|YP_006861926.1|	-	0.049	13.2	0.0	0.072	12.6	0.0	1.3	1	0	0	1	1	1	0	Methyltransferase	small	domain
Methyltransf_18	PF12847.7	gi|408403943|ref|YP_006861926.1|	-	0.13	12.2	0.0	0.24	11.3	0.0	1.4	1	0	0	1	1	1	0	Methyltransferase	domain
Presenilin	PF01080.17	gi|408403944|ref|YP_006861927.1|	-	0.47	9.2	4.6	1.6	7.4	4.9	1.6	2	0	0	2	2	2	0	Presenilin
Peroxin-3	PF04882.12	gi|408403944|ref|YP_006861927.1|	-	1.4	7.8	7.7	2.1	7.3	7.7	1.1	1	0	0	1	1	1	0	Peroxin-3
zf-AN1	PF01428.16	gi|408403945|ref|YP_006861928.1|	-	7.3e-11	42.1	6.6	1.1e-10	41.5	6.6	1.2	1	0	0	1	1	1	1	AN1-like	Zinc	finger
Peptidase_M50	PF02163.22	gi|408403945|ref|YP_006861928.1|	-	0.0019	17.5	8.7	0.03	13.6	0.7	2.3	1	1	1	2	2	2	2	Peptidase	family	M50
DUF4349	PF14257.6	gi|408403945|ref|YP_006861928.1|	-	0.61	9.5	1.5	1	8.7	1.5	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4349)
zf-C2H2_4	PF13894.6	gi|408403945|ref|YP_006861928.1|	-	8.7	7.5	7.5	2.1	9.4	2.6	2.3	2	0	0	2	2	2	0	C2H2-type	zinc	finger
Acyl-CoA_dh_1	PF00441.24	gi|408403947|ref|YP_006861930.1|	-	1e-29	103.7	4.6	3.9e-29	101.8	2.7	2.3	2	1	0	2	2	2	1	Acyl-CoA	dehydrogenase,	C-terminal	domain
Acyl-CoA_dh_M	PF02770.19	gi|408403947|ref|YP_006861930.1|	-	1.8e-23	82.6	0.1	6.8e-23	80.7	0.1	1.9	2	0	0	2	2	2	1	Acyl-CoA	dehydrogenase,	middle	domain
Acyl-CoA_dh_N	PF02771.16	gi|408403947|ref|YP_006861930.1|	-	1.9e-21	76.8	0.0	5.3e-21	75.4	0.0	1.8	2	0	0	2	2	2	1	Acyl-CoA	dehydrogenase,	N-terminal	domain
Acyl-CoA_dh_2	PF08028.11	gi|408403947|ref|YP_006861930.1|	-	6.9e-10	39.3	6.2	3.2e-09	37.1	6.2	1.9	1	1	0	1	1	1	1	Acyl-CoA	dehydrogenase,	C-terminal	domain
HATPase_c_3	PF13589.6	gi|408403947|ref|YP_006861930.1|	-	0.054	13.3	0.0	0.11	12.3	0.0	1.5	1	0	0	1	1	1	0	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
DUF1326	PF07040.11	gi|408403948|ref|YP_006861931.1|	-	2.1e-55	187.5	0.0	2.4e-55	187.3	0.0	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1326)
Aminotran_3	PF00202.21	gi|408403949|ref|YP_006861932.1|	-	2.4e-91	306.4	0.0	3e-91	306.1	0.0	1.1	1	0	0	1	1	1	1	Aminotransferase	class-III
PrpR_N	PF06506.11	gi|408403949|ref|YP_006861932.1|	-	0.046	13.3	0.1	0.11	12.0	0.0	1.6	2	0	0	2	2	2	0	Propionate	catabolism	activator
Asparaginase_2	PF01112.18	gi|408403949|ref|YP_006861932.1|	-	0.054	12.5	0.1	0.13	11.3	0.0	1.7	2	0	0	2	2	2	0	Asparaginase
Response_reg	PF00072.24	gi|408403950|ref|YP_006861933.1|	-	2.8e-18	66.1	1.7	4e-18	65.6	1.7	1.2	1	0	0	1	1	1	1	Response	regulator	receiver	domain
DUF1487	PF07368.11	gi|408403950|ref|YP_006861933.1|	-	0.054	12.9	0.1	0.094	12.2	0.1	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1487)
PDZ_2	PF13180.6	gi|408403951|ref|YP_006861934.1|	-	4.1e-13	49.4	0.1	6.2e-13	48.9	0.1	1.2	1	0	0	1	1	1	1	PDZ	domain
PDZ_6	PF17820.1	gi|408403951|ref|YP_006861934.1|	-	0.00017	21.4	4.0	0.088	12.7	0.7	2.3	2	0	0	2	2	2	2	PDZ	domain
PDZ	PF00595.24	gi|408403951|ref|YP_006861934.1|	-	0.042	14.2	4.8	1.4	9.3	1.0	2.2	2	0	0	2	2	2	0	PDZ	domain
Tricorn_PDZ	PF14685.6	gi|408403951|ref|YP_006861934.1|	-	0.077	13.0	0.1	0.18	11.8	0.1	1.6	1	0	0	1	1	1	0	Tricorn	protease	PDZ	domain
Arc_trans_TRASH	PF08394.10	gi|408403952|ref|YP_006861935.1|	-	0.015	15.6	0.9	0.23	11.8	0.0	2.3	2	0	0	2	2	2	0	Archaeal	TRASH	domain
GFA	PF04828.14	gi|408403952|ref|YP_006861935.1|	-	0.02	15.2	0.8	0.87	10.0	0.1	2.2	1	1	0	2	2	2	0	Glutathione-dependent	formaldehyde-activating	enzyme
Rpr2	PF04032.16	gi|408403952|ref|YP_006861935.1|	-	0.02	15.2	0.0	2.7	8.3	0.0	2.3	2	0	0	2	2	2	0	RNAse	P	Rpr2/Rpp21/SNM1	subunit	domain
RNA_POL_M_15KD	PF02150.16	gi|408403952|ref|YP_006861935.1|	-	0.1	12.5	0.4	1.9	8.4	0.1	2.2	2	0	0	2	2	2	0	RNA	polymerases	M/15	Kd	subunit
DZR	PF12773.7	gi|408403952|ref|YP_006861935.1|	-	0.13	12.3	0.8	1.5	8.9	0.8	2.1	1	1	0	1	1	1	0	Double	zinc	ribbon
Hemerythrin	PF01814.23	gi|408403953|ref|YP_006861936.1|	-	4.1e-16	59.8	1.7	4.1e-16	59.8	1.7	2.2	2	1	0	2	2	2	1	Hemerythrin	HHE	cation	binding	domain
MIase	PF02426.16	gi|408403954|ref|YP_006861937.1|	-	1.3e-19	70.2	0.1	5.1e-19	68.2	0.0	1.8	1	1	1	2	2	2	1	Muconolactone	delta-isomerase
Ribosom_S30AE_C	PF16321.5	gi|408403954|ref|YP_006861937.1|	-	0.012	15.3	0.1	0.02	14.6	0.1	1.4	1	0	0	1	1	1	0	Sigma	54	modulation/S30EA	ribosomal	protein	C	terminus
Gln-synt_C	PF00120.24	gi|408403955|ref|YP_006861938.1|	-	1.1e-106	356.7	0.0	1.5e-106	356.3	0.0	1.1	1	0	0	1	1	1	1	Glutamine	synthetase,	catalytic	domain
Gln-synt_N	PF03951.19	gi|408403955|ref|YP_006861938.1|	-	1.1e-15	57.1	0.0	2.2e-15	56.2	0.0	1.5	1	0	0	1	1	1	1	Glutamine	synthetase,	beta-Grasp	domain
AsnC_trans_reg	PF01037.21	gi|408403956|ref|YP_006861939.1|	-	3.4e-12	46.2	0.1	5e-12	45.6	0.1	1.3	1	0	0	1	1	1	1	Lrp/AsnC	ligand	binding	domain
HTH_24	PF13412.6	gi|408403956|ref|YP_006861939.1|	-	2e-08	33.7	0.0	3.9e-08	32.7	0.0	1.5	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_AsnC-type	PF13404.6	gi|408403956|ref|YP_006861939.1|	-	6.7e-06	25.8	0.0	1.2e-05	25.0	0.0	1.5	1	0	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
Fe_dep_repress	PF01325.19	gi|408403956|ref|YP_006861939.1|	-	0.00049	20.2	0.1	0.001	19.2	0.1	1.5	1	0	0	1	1	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_Crp_2	PF13545.6	gi|408403956|ref|YP_006861939.1|	-	0.0051	16.8	0.0	0.01	15.8	0.0	1.5	1	0	0	1	1	1	1	Crp-like	helix-turn-helix	domain
HTH_50	PF18024.1	gi|408403956|ref|YP_006861939.1|	-	0.021	14.4	0.0	0.092	12.4	0.0	2.2	2	1	0	2	2	2	0	Helix-turn-helix	domain
HTH_1	PF00126.27	gi|408403956|ref|YP_006861939.1|	-	0.025	14.5	0.0	0.049	13.6	0.0	1.6	1	0	0	1	1	1	0	Bacterial	regulatory	helix-turn-helix	protein,	lysR	family
MarR	PF01047.22	gi|408403956|ref|YP_006861939.1|	-	0.026	14.4	0.0	0.053	13.4	0.0	1.5	1	0	0	1	1	1	0	MarR	family
HTH_28	PF13518.6	gi|408403956|ref|YP_006861939.1|	-	0.033	14.3	0.0	0.052	13.7	0.0	1.3	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_23	PF13384.6	gi|408403956|ref|YP_006861939.1|	-	0.065	13.0	0.0	0.15	11.9	0.0	1.6	1	0	0	1	1	1	0	Homeodomain-like	domain
HTH_10	PF04967.12	gi|408403956|ref|YP_006861939.1|	-	0.081	12.7	0.0	0.16	11.8	0.0	1.5	1	0	0	1	1	1	0	HTH	DNA	binding	domain
Rrf2	PF02082.20	gi|408403956|ref|YP_006861939.1|	-	0.092	13.1	0.0	0.32	11.4	0.0	1.9	2	0	0	2	2	2	0	Transcriptional	regulator
HTH_5	PF01022.20	gi|408403956|ref|YP_006861939.1|	-	0.1	12.5	0.0	0.25	11.2	0.0	1.7	2	0	0	2	2	2	0	Bacterial	regulatory	protein,	arsR	family
TFIIB	PF00382.19	gi|408403957|ref|YP_006861940.1|	-	7.6e-30	102.8	5.0	4.9e-14	52.1	0.1	2.4	2	0	0	2	2	2	2	Transcription	factor	TFIIB	repeat
TF_Zn_Ribbon	PF08271.12	gi|408403957|ref|YP_006861940.1|	-	4.2e-05	23.0	2.8	6.8e-05	22.3	2.8	1.4	1	0	0	1	1	1	1	TFIIB	zinc-binding
Sigma70_r4	PF04545.16	gi|408403957|ref|YP_006861940.1|	-	0.0033	16.9	0.3	4	7.0	0.0	3.1	3	0	0	3	3	3	2	Sigma-70,	region	4
Cyclin_N	PF00134.23	gi|408403957|ref|YP_006861940.1|	-	0.049	13.4	0.2	6.1	6.6	0.0	2.4	2	0	0	2	2	2	0	Cyclin,	N-terminal	domain
HTH_11	PF08279.12	gi|408403957|ref|YP_006861940.1|	-	0.095	12.7	1.3	12	5.9	0.0	3.0	3	0	0	3	3	3	0	HTH	domain
Cyclin_C	PF02984.19	gi|408403957|ref|YP_006861940.1|	-	0.11	12.6	1.0	6.8	6.8	0.2	2.4	1	1	1	2	2	2	0	Cyclin,	C-terminal	domain
zf_UBZ	PF18439.1	gi|408403957|ref|YP_006861940.1|	-	0.12	12.0	1.4	3.8	7.2	0.0	2.4	2	0	0	2	2	2	0	Ubiquitin-Binding	Zinc	Finger
HTH_AsnC-type	PF13404.6	gi|408403957|ref|YP_006861940.1|	-	0.13	12.1	0.1	19	5.2	0.0	2.9	3	0	0	3	3	3	0	AsnC-type	helix-turn-helix	domain
Ribosomal_S27e	PF01667.17	gi|408403957|ref|YP_006861940.1|	-	0.18	11.6	5.6	0.37	10.5	5.6	1.5	1	0	0	1	1	1	0	Ribosomal	protein	S27
A2L_zn_ribbon	PF08792.10	gi|408403957|ref|YP_006861940.1|	-	1.4	8.7	4.8	1.9	8.3	3.7	1.8	2	0	0	2	2	2	0	A2L	zinc	ribbon	domain
Rrf2	PF02082.20	gi|408403957|ref|YP_006861940.1|	-	3.6	8.0	5.4	9.1	6.7	0.1	3.4	3	2	2	5	5	5	0	Transcriptional	regulator
SR1P	PF13790.6	gi|408403957|ref|YP_006861940.1|	-	5.5	7.2	7.8	0.46	10.6	1.0	2.5	3	0	0	3	3	3	0	SR1	protein
HTH_45	PF14947.6	gi|408403958|ref|YP_006861941.1|	-	1.7e-18	66.4	0.2	2.3e-18	66.0	0.2	1.1	1	0	0	1	1	1	1	Winged	helix-turn-helix
DUF3471	PF11954.8	gi|408403958|ref|YP_006861941.1|	-	0.017	15.5	0.0	0.023	15.1	0.0	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3471)
GATase_2	PF00310.21	gi|408403960|ref|YP_006861943.1|	-	0.04	12.6	0.0	0.044	12.5	0.0	1.0	1	0	0	1	1	1	0	Glutamine	amidotransferases	class-II
MazE_antitoxin	PF04014.18	gi|408403963|ref|YP_006861946.1|	-	0.00021	21.1	0.0	0.00048	20.0	0.0	1.7	1	1	0	1	1	1	1	Antidote-toxin	recognition	MazE,	bacterial	antitoxin
PrlF_antitoxin	PF15937.5	gi|408403963|ref|YP_006861946.1|	-	0.12	12.8	0.0	0.13	12.7	0.0	1.1	1	0	0	1	1	1	0	prlF	antitoxin	for	toxin	YhaV_toxin
Rho_RNA_bind	PF07497.12	gi|408403963|ref|YP_006861946.1|	-	0.16	11.9	0.0	0.17	11.8	0.0	1.3	1	0	0	1	1	1	0	Rho	termination	factor,	RNA-binding	domain
RTC_insert	PF05189.13	gi|408403964|ref|YP_006861947.1|	-	0.05	14.1	0.1	0.061	13.8	0.1	1.1	1	0	0	1	1	1	0	RNA	3'-terminal	phosphate	cyclase	(RTC),	insert	domain
GvpG	PF05120.12	gi|408403966|ref|YP_006861949.1|	-	0.047	13.7	0.1	0.13	12.3	0.1	1.7	1	0	0	1	1	1	0	Gas	vesicle	protein	G
zf-UBP	PF02148.19	gi|408403968|ref|YP_006861951.1|	-	0.0041	17.4	0.2	0.0054	17.0	0.2	1.2	1	0	0	1	1	1	1	Zn-finger	in	ubiquitin-hydrolases	and	other	protein
HAD_SAK_2	PF18143.1	gi|408403972|ref|YP_006861955.1|	-	0.13	12.6	0.0	0.14	12.5	0.0	1.1	1	0	0	1	1	1	0	HAD	domain	in	Swiss	Army	Knife	RNA	repair	proteins
ID	PF18543.1	gi|408403974|ref|YP_006861957.1|	-	0.024	14.6	0.0	0.19	11.8	0.0	2.3	2	0	0	2	2	2	0	Intracellular	delivery	domain
GerE	PF00196.19	gi|408403975|ref|YP_006861958.1|	-	2.9e-06	26.7	0.2	8.8e-06	25.2	0.2	1.7	2	0	0	2	2	2	1	Bacterial	regulatory	proteins,	luxR	family
HTH_23	PF13384.6	gi|408403975|ref|YP_006861958.1|	-	7.3e-06	25.6	0.1	1.6e-05	24.5	0.1	1.6	1	0	0	1	1	1	1	Homeodomain-like	domain
HTH_11	PF08279.12	gi|408403975|ref|YP_006861958.1|	-	0.00016	21.5	2.3	0.00018	21.4	0.4	2.0	2	0	0	2	2	2	1	HTH	domain
Sigma70_r4_2	PF08281.12	gi|408403975|ref|YP_006861958.1|	-	0.00016	21.3	0.2	0.00055	19.5	0.1	2.0	2	0	0	2	2	2	1	Sigma-70,	region	4
HTH_38	PF13936.6	gi|408403975|ref|YP_006861958.1|	-	0.00033	20.4	0.0	0.00057	19.6	0.0	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
Sigma70_ECF	PF07638.11	gi|408403975|ref|YP_006861958.1|	-	0.0012	18.8	0.1	0.0025	17.7	0.1	1.6	1	0	0	1	1	1	1	ECF	sigma	factor
Trp_repressor	PF01371.19	gi|408403975|ref|YP_006861958.1|	-	0.0014	18.8	0.1	0.0029	17.7	0.1	1.6	1	0	0	1	1	1	1	Trp	repressor	protein
HTH_24	PF13412.6	gi|408403975|ref|YP_006861958.1|	-	0.0057	16.2	0.0	0.02	14.4	0.0	1.9	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
HTH_Crp_2	PF13545.6	gi|408403975|ref|YP_006861958.1|	-	0.0093	15.9	0.0	0.021	14.8	0.0	1.6	1	0	0	1	1	1	1	Crp-like	helix-turn-helix	domain
HTH_7	PF02796.15	gi|408403975|ref|YP_006861958.1|	-	0.015	15.4	0.0	0.041	14.0	0.0	1.8	2	0	0	2	2	2	0	Helix-turn-helix	domain	of	resolvase
Flu_M1	PF00598.19	gi|408403975|ref|YP_006861958.1|	-	0.034	13.6	0.1	5.5	6.5	0.0	2.2	2	0	0	2	2	2	0	Influenza	Matrix	protein	(M1)
DUF763	PF05559.11	gi|408403975|ref|YP_006861958.1|	-	0.086	12.0	1.1	0.11	11.7	1.1	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF763)
HTH_3	PF01381.22	gi|408403975|ref|YP_006861958.1|	-	0.17	12.0	0.0	0.17	12.0	0.0	2.4	3	0	0	3	3	3	0	Helix-turn-helix
GLTP	PF08718.11	gi|408403977|ref|YP_006861960.1|	-	0.0067	16.7	0.9	2.5	8.3	0.1	2.5	2	0	0	2	2	2	2	Glycolipid	transfer	protein	(GLTP)
Phage_integrase	PF00589.22	gi|408403977|ref|YP_006861960.1|	-	0.013	15.3	0.0	0.062	13.1	0.0	2.1	2	1	0	2	2	2	0	Phage	integrase	family
Phage_int_SAM_5	PF13102.6	gi|408403977|ref|YP_006861960.1|	-	0.04	14.3	4.6	0.27	11.6	2.0	3.3	2	1	0	2	2	2	0	Phage	integrase	SAM-like	domain
CSTF_C	PF14304.6	gi|408403977|ref|YP_006861960.1|	-	0.062	12.9	0.2	0.12	11.9	0.2	1.5	1	0	0	1	1	1	0	Transcription	termination	and	cleavage	factor	C-terminal
Phage_int_SAM_1	PF02899.17	gi|408403977|ref|YP_006861960.1|	-	0.32	11.3	3.2	0.79	10.1	0.1	3.1	4	0	0	4	4	4	0	Phage	integrase,	N-terminal	SAM-like	domain
4HB_MCP_1	PF12729.7	gi|408403977|ref|YP_006861960.1|	-	2	8.0	9.1	3.8	7.0	4.8	2.6	2	1	0	2	2	2	0	Four	helix	bundle	sensory	module	for	signal	transduction
DUF3106	PF11304.8	gi|408403977|ref|YP_006861960.1|	-	7.3	7.1	8.1	4.6	7.8	2.0	2.8	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF3106)
GARS_A	PF01071.19	gi|408403978|ref|YP_006861961.1|	-	4.5e-13	49.4	0.0	5.1e-12	46.0	0.0	2.5	2	0	0	2	2	2	1	Phosphoribosylglycinamide	synthetase,	ATP-grasp	(A)	domain
GARS_C	PF02843.16	gi|408403978|ref|YP_006861961.1|	-	4.9e-09	36.3	0.0	1.5e-08	34.8	0.0	2.0	1	0	0	1	1	1	1	Phosphoribosylglycinamide	synthetase,	C	domain
LAGLIDADG_3	PF14528.6	gi|408403978|ref|YP_006861961.1|	-	2.9e-06	27.5	0.0	0.00027	21.2	0.1	2.7	2	0	0	2	2	2	1	LAGLIDADG-like	domain
Intein_splicing	PF14890.6	gi|408403978|ref|YP_006861961.1|	-	0.001	19.0	0.1	0.0025	17.8	0.1	1.6	1	0	0	1	1	1	1	Intein	splicing	domain
Hint_2	PF13403.6	gi|408403978|ref|YP_006861961.1|	-	0.069	13.4	0.0	0.14	12.5	0.0	1.5	1	0	0	1	1	1	0	Hint	domain
AsnC_trans_reg	PF01037.21	gi|408403979|ref|YP_006861962.1|	-	1.2e-08	34.8	0.0	1.3e-08	34.7	0.0	1.0	1	0	0	1	1	1	1	Lrp/AsnC	ligand	binding	domain
GYD	PF08734.11	gi|408403979|ref|YP_006861962.1|	-	0.0043	17.0	0.0	0.0049	16.8	0.0	1.1	1	0	0	1	1	1	1	GYD	domain
ACT_4	PF13291.6	gi|408403979|ref|YP_006861962.1|	-	0.036	14.7	0.1	7.6	7.2	0.0	2.2	2	0	0	2	2	2	0	ACT	domain
DUF1192	PF06698.11	gi|408403980|ref|YP_006861963.1|	-	0.1	12.7	1.2	8.2	6.6	0.0	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1192)
DUF3007	PF11460.8	gi|408403981|ref|YP_006861964.1|	-	0.016	15.4	0.2	0.026	14.8	0.2	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3007)
adh_short	PF00106.25	gi|408403982|ref|YP_006861965.1|	-	7.3e-39	133.2	0.4	7.7e-38	129.9	0.4	2.0	1	1	0	1	1	1	1	short	chain	dehydrogenase
adh_short_C2	PF13561.6	gi|408403982|ref|YP_006861965.1|	-	1.2e-29	103.5	0.2	1e-28	100.5	0.2	1.9	1	1	0	1	1	1	1	Enoyl-(Acyl	carrier	protein)	reductase
KR	PF08659.10	gi|408403982|ref|YP_006861965.1|	-	3.6e-08	33.5	0.2	5.4e-08	33.0	0.2	1.3	1	0	0	1	1	1	1	KR	domain
Epimerase	PF01370.21	gi|408403982|ref|YP_006861965.1|	-	4.3e-07	29.6	0.1	5.9e-07	29.2	0.1	1.1	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
GDP_Man_Dehyd	PF16363.5	gi|408403982|ref|YP_006861965.1|	-	1.2e-05	24.9	0.0	1.7e-05	24.4	0.0	1.2	1	0	0	1	1	1	1	GDP-mannose	4,6	dehydratase
3HCDH_N	PF02737.18	gi|408403982|ref|YP_006861965.1|	-	0.00026	20.9	0.1	0.00052	19.9	0.1	1.4	1	0	0	1	1	1	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
Polysacc_synt_2	PF02719.15	gi|408403982|ref|YP_006861965.1|	-	0.00072	18.8	0.1	0.0011	18.2	0.1	1.2	1	0	0	1	1	1	1	Polysaccharide	biosynthesis	protein
DUF1776	PF08643.10	gi|408403982|ref|YP_006861965.1|	-	0.025	14.0	0.1	0.12	11.7	0.1	1.9	1	1	0	1	1	1	0	Fungal	family	of	unknown	function	(DUF1776)
THF_DHG_CYH_C	PF02882.19	gi|408403982|ref|YP_006861965.1|	-	0.056	12.8	0.1	0.12	11.7	0.1	1.5	2	0	0	2	2	2	0	Tetrahydrofolate	dehydrogenase/cyclohydrolase,	NAD(P)-binding	domain
2-Hacid_dh_C	PF02826.19	gi|408403982|ref|YP_006861965.1|	-	0.082	12.3	0.1	0.12	11.7	0.1	1.3	1	0	0	1	1	1	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
Ric8	PF10165.9	gi|408403982|ref|YP_006861965.1|	-	0.1	11.6	0.0	1.7	7.6	0.0	2.1	1	1	0	2	2	2	0	Guanine	nucleotide	exchange	factor	synembryn
NAD_binding_7	PF13241.6	gi|408403982|ref|YP_006861965.1|	-	0.14	12.6	0.1	0.26	11.8	0.1	1.4	1	0	0	1	1	1	0	Putative	NAD(P)-binding
Amidohydro_1	PF01979.20	gi|408403983|ref|YP_006861966.1|	-	5.9e-25	88.3	0.1	6.1e-24	85.0	0.1	2.4	1	1	0	1	1	1	1	Amidohydrolase	family
Amidohydro_3	PF07969.11	gi|408403983|ref|YP_006861966.1|	-	1.3e-17	64.4	0.1	8.1e-09	35.5	0.0	3.1	1	1	1	2	2	2	2	Amidohydrolase	family
Urease_alpha	PF00449.20	gi|408403983|ref|YP_006861966.1|	-	0.0012	19.2	0.9	0.0033	17.8	0.9	1.8	1	0	0	1	1	1	1	Urease	alpha-subunit,	N-terminal	domain
TatD_DNase	PF01026.21	gi|408403983|ref|YP_006861966.1|	-	0.041	13.3	0.0	0.11	11.8	0.0	1.7	2	0	0	2	2	2	0	TatD	related	DNase
MscL	PF01741.18	gi|408403984|ref|YP_006861967.1|	-	9.5e-24	84.0	0.2	1.1e-23	83.9	0.2	1.0	1	0	0	1	1	1	1	Large-conductance	mechanosensitive	channel,	MscL
Rib_5-P_isom_A	PF06026.14	gi|408403985|ref|YP_006861968.1|	-	1.6e-53	180.9	0.0	1.9e-53	180.6	0.0	1.1	1	0	0	1	1	1	1	Ribose	5-phosphate	isomerase	A	(phosphoriboisomerase	A)
DeoRC	PF00455.22	gi|408403985|ref|YP_006861968.1|	-	4.1e-07	30.1	0.4	0.0063	16.5	0.0	2.2	1	1	1	2	2	2	2	DeoR	C	terminal	sensor	domain
DUF872	PF05915.12	gi|408403988|ref|YP_006861971.1|	-	0.04	14.1	2.6	0.053	13.7	2.0	1.5	1	1	1	2	2	2	0	Eukaryotic	protein	of	unknown	function	(DUF872)
Trp_oprn_chp	PF09534.10	gi|408403988|ref|YP_006861971.1|	-	0.28	11.0	2.3	0.38	10.5	2.3	1.2	1	0	0	1	1	1	0	Tryptophan-associated	transmembrane	protein	(Trp_oprn_chp)
ABC2_membrane_2	PF12679.7	gi|408403988|ref|YP_006861971.1|	-	0.96	8.7	10.6	1.1	8.4	10.6	1.0	1	0	0	1	1	1	0	ABC-2	family	transporter	protein
DUF3040	PF11239.8	gi|408403988|ref|YP_006861971.1|	-	8.5	6.7	8.8	17	5.7	8.7	1.6	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF3040)
TFIIB	PF00382.19	gi|408403989|ref|YP_006861972.1|	-	5.4e-36	122.5	6.8	1.8e-18	66.4	1.2	2.2	2	0	0	2	2	2	2	Transcription	factor	TFIIB	repeat
TF_Zn_Ribbon	PF08271.12	gi|408403989|ref|YP_006861972.1|	-	3.8e-07	29.5	0.2	6.9e-07	28.7	0.2	1.5	1	0	0	1	1	1	1	TFIIB	zinc-binding
Cyclin_C	PF02984.19	gi|408403989|ref|YP_006861972.1|	-	0.00016	21.7	0.2	0.15	12.1	0.1	2.3	1	1	1	2	2	2	2	Cyclin,	C-terminal	domain
Sigma70_r4	PF04545.16	gi|408403989|ref|YP_006861972.1|	-	0.00023	20.6	0.0	0.015	14.8	0.0	2.7	2	0	0	2	2	2	1	Sigma-70,	region	4
HTH_36	PF13730.6	gi|408403989|ref|YP_006861972.1|	-	0.00073	19.4	1.8	3.8	7.5	0.1	3.3	3	0	0	3	3	3	2	Helix-turn-helix	domain
Cyclin_N	PF00134.23	gi|408403989|ref|YP_006861972.1|	-	0.0028	17.4	0.2	0.026	14.3	0.0	2.0	2	0	0	2	2	2	1	Cyclin,	N-terminal	domain
HTH_AsnC-type	PF13404.6	gi|408403989|ref|YP_006861972.1|	-	0.0042	16.9	0.0	0.35	10.7	0.0	2.9	3	0	0	3	3	3	1	AsnC-type	helix-turn-helix	domain
HTH_Tnp_ISL3	PF13542.6	gi|408403989|ref|YP_006861972.1|	-	0.013	14.8	0.2	1.3	8.5	0.0	3.2	4	0	0	4	4	4	0	Helix-turn-helix	domain	of	transposase	family	ISL3
HTH_3	PF01381.22	gi|408403989|ref|YP_006861972.1|	-	0.024	14.7	0.0	0.11	12.6	0.0	2.2	2	0	0	2	2	2	0	Helix-turn-helix
Rrf2	PF02082.20	gi|408403989|ref|YP_006861972.1|	-	0.027	14.8	0.2	18	5.7	0.0	3.1	3	0	0	3	3	3	0	Transcriptional	regulator
RB_B	PF01857.20	gi|408403989|ref|YP_006861972.1|	-	0.034	14.2	0.1	0.067	13.2	0.0	1.6	2	0	0	2	2	2	0	Retinoblastoma-associated	protein	B	domain
LacI	PF00356.21	gi|408403989|ref|YP_006861972.1|	-	0.054	13.3	4.2	0.61	9.9	0.3	3.4	3	0	0	3	3	3	0	Bacterial	regulatory	proteins,	lacI	family
Sigma70_r4_2	PF08281.12	gi|408403989|ref|YP_006861972.1|	-	0.067	12.9	0.2	0.39	10.4	0.0	2.3	2	0	0	2	2	2	0	Sigma-70,	region	4
Phage_terminase	PF10668.9	gi|408403989|ref|YP_006861972.1|	-	0.082	12.9	0.2	4.5	7.4	0.0	2.7	3	0	0	3	3	3	0	Phage	terminase	small	subunit
zinc_ribbon_2	PF13240.6	gi|408403989|ref|YP_006861972.1|	-	0.11	12.2	0.2	0.2	11.4	0.2	1.4	1	0	0	1	1	1	0	zinc-ribbon	domain
MerR	PF00376.23	gi|408403989|ref|YP_006861972.1|	-	0.12	12.1	0.1	1.5	8.7	0.0	2.6	2	0	0	2	2	2	0	MerR	family	regulatory	protein
RRT14	PF17075.5	gi|408403990|ref|YP_006861973.1|	-	0.011	15.8	0.2	0.015	15.4	0.2	1.2	1	0	0	1	1	1	0	Regular	of	rDNA	transcription	protein	14
SUI1	PF01253.22	gi|408403991|ref|YP_006861974.1|	-	1.4e-20	73.5	0.1	2.2e-20	72.9	0.1	1.3	1	0	0	1	1	1	1	Translation	initiation	factor	SUI1
Img2	PF05046.14	gi|408403991|ref|YP_006861974.1|	-	0.0071	16.6	0.0	0.009	16.3	0.0	1.2	1	0	0	1	1	1	1	Mitochondrial	large	subunit	ribosomal	protein	(Img2)
DTW	PF03942.15	gi|408403991|ref|YP_006861974.1|	-	0.092	12.4	0.3	0.099	12.3	0.3	1.1	1	0	0	1	1	1	0	DTW	domain
Auto_anti-p27	PF06677.12	gi|408403992|ref|YP_006861975.1|	-	3.4e-08	33.5	0.3	4.9e-08	33.0	0.3	1.3	1	0	0	1	1	1	1	Sjogren's	syndrome/scleroderma	autoantigen	1	(Autoantigen	p27)
OrfB_Zn_ribbon	PF07282.11	gi|408403992|ref|YP_006861975.1|	-	0.0041	17.0	0.5	0.0074	16.2	0.5	1.4	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
DZR	PF12773.7	gi|408403992|ref|YP_006861975.1|	-	0.01	15.8	1.0	0.018	15.0	1.0	1.4	1	0	0	1	1	1	0	Double	zinc	ribbon
TF_Zn_Ribbon	PF08271.12	gi|408403992|ref|YP_006861975.1|	-	0.02	14.4	0.5	0.04	13.4	0.5	1.5	1	0	0	1	1	1	0	TFIIB	zinc-binding
Zn_Tnp_IS1595	PF12760.7	gi|408403992|ref|YP_006861975.1|	-	0.031	14.2	3.3	0.33	11.0	0.0	2.3	1	1	1	2	2	2	0	Transposase	zinc-ribbon	domain
zinc_ribbon_2	PF13240.6	gi|408403992|ref|YP_006861975.1|	-	0.051	13.3	5.1	0.74	9.6	0.4	2.3	2	0	0	2	2	2	0	zinc-ribbon	domain
zf-ribbon_3	PF13248.6	gi|408403992|ref|YP_006861975.1|	-	0.054	12.9	3.0	2.1	7.8	0.2	2.3	2	0	0	2	2	2	0	zinc-ribbon	domain
TackOD1	PF18551.1	gi|408403992|ref|YP_006861975.1|	-	0.056	13.1	0.3	0.088	12.5	0.3	1.3	1	0	0	1	1	1	0	Thaumarchaeal	output	domain	1
DUF1178	PF06676.11	gi|408403992|ref|YP_006861975.1|	-	0.063	13.7	0.6	0.078	13.4	0.6	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1178)
zf-TFIIB	PF13453.6	gi|408403992|ref|YP_006861975.1|	-	0.064	12.6	0.5	0.12	11.7	0.0	1.7	2	0	0	2	2	2	0	Transcription	factor	zinc-finger
zf-IS66	PF13005.7	gi|408403992|ref|YP_006861975.1|	-	0.16	12.4	1.2	7.8	7.0	0.1	2.3	2	0	0	2	2	2	0	zinc-finger	binding	domain	of	transposase	IS66
CpXC	PF14353.6	gi|408403992|ref|YP_006861975.1|	-	0.18	11.9	2.4	0.76	9.8	2.4	2.3	1	1	0	1	1	1	0	CpXC	protein
Zn-ribbon_8	PF09723.10	gi|408403992|ref|YP_006861975.1|	-	0.21	11.7	3.5	1.6	8.9	0.4	2.3	1	1	2	3	3	3	0	Zinc	ribbon	domain
Sec61_beta	PF03911.16	gi|408403993|ref|YP_006861976.1|	-	2.5e-15	56.2	0.2	2.8e-15	56.0	0.2	1.1	1	0	0	1	1	1	1	Sec61beta	family
DUF2070	PF09843.9	gi|408403994|ref|YP_006861977.1|	-	3.7e-129	431.6	1.6	4.4e-129	431.3	1.6	1.0	1	0	0	1	1	1	1	Predicted	membrane	protein	(DUF2070)
Mrr_cat	PF04471.12	gi|408403995|ref|YP_006861978.1|	-	7.2e-07	29.2	0.0	1.5e-06	28.2	0.0	1.5	1	0	0	1	1	1	1	Restriction	endonuclease
NERD	PF08378.11	gi|408403995|ref|YP_006861978.1|	-	0.00022	21.6	0.0	0.00038	20.9	0.0	1.6	1	1	0	1	1	1	1	Nuclease-related	domain
MTES_1575	PF18741.1	gi|408403995|ref|YP_006861978.1|	-	0.03	14.5	0.0	0.066	13.4	0.0	1.6	1	0	0	1	1	1	0	REase_MTES_1575
UPF0102	PF02021.17	gi|408403995|ref|YP_006861978.1|	-	0.032	14.5	0.1	0.082	13.2	0.0	1.7	2	0	0	2	2	2	0	Uncharacterised	protein	family	UPF0102
SLS	PF14611.6	gi|408403995|ref|YP_006861978.1|	-	0.13	12.1	0.0	0.2	11.4	0.0	1.3	1	0	0	1	1	1	0	Mitochondrial	inner-membrane-bound	regulator
CofC	PF01983.16	gi|408403997|ref|YP_006861980.1|	-	1.3e-30	106.2	0.0	1.5e-30	106.0	0.0	1.0	1	0	0	1	1	1	1	Guanylyl	transferase	CofC	like
NTP_transf_3	PF12804.7	gi|408403997|ref|YP_006861980.1|	-	3.5e-08	34.0	0.4	6.5e-08	33.1	0.4	1.4	1	1	0	1	1	1	1	MobA-like	NTP	transferase	domain
DUF2064	PF09837.9	gi|408403997|ref|YP_006861980.1|	-	1.2e-05	25.1	0.5	2.2e-05	24.3	0.5	1.3	1	0	0	1	1	1	1	Uncharacterized	protein	conserved	in	bacteria	(DUF2064)
UPF0052	PF01933.18	gi|408403998|ref|YP_006861981.1|	-	8.8e-47	159.7	0.1	1e-46	159.5	0.1	1.0	1	0	0	1	1	1	1	Uncharacterised	protein	family	UPF0052
UPF0113	PF03657.13	gi|408404000|ref|YP_006861983.1|	-	8.6e-24	83.6	0.2	1.3e-23	83.1	0.2	1.3	1	0	0	1	1	1	1	UPF0113	PUA	domain
PUA	PF01472.20	gi|408404000|ref|YP_006861983.1|	-	4.3e-07	29.8	0.1	7.7e-07	29.0	0.1	1.4	1	0	0	1	1	1	1	PUA	domain
UPF0113_N	PF17833.1	gi|408404000|ref|YP_006861983.1|	-	2.2e-06	28.1	0.0	5.6e-06	26.8	0.0	1.7	1	0	0	1	1	1	1	UPF0113	Pre-PUA	domain
Methyltr_RsmB-F	PF01189.17	gi|408404001|ref|YP_006861984.1|	-	2.2e-57	194.0	0.0	2.8e-57	193.6	0.0	1.1	1	0	0	1	1	1	1	16S	rRNA	methyltransferase	RsmB/F
Methyltr_RsmF_N	PF17125.5	gi|408404001|ref|YP_006861984.1|	-	7.5e-09	36.0	0.0	1.8e-08	34.8	0.0	1.6	1	0	0	1	1	1	1	N-terminal	domain	of	16S	rRNA	methyltransferase	RsmF
FtsJ	PF01728.19	gi|408404001|ref|YP_006861984.1|	-	1.9e-06	28.1	0.1	3e-06	27.4	0.1	1.2	1	0	0	1	1	1	1	FtsJ-like	methyltransferase
Methyltransf_31	PF13847.6	gi|408404001|ref|YP_006861984.1|	-	0.00048	19.9	0.0	0.0013	18.6	0.0	1.6	2	0	0	2	2	2	1	Methyltransferase	domain
Methyltransf_25	PF13649.6	gi|408404001|ref|YP_006861984.1|	-	0.0013	19.3	0.1	0.0097	16.6	0.1	2.3	1	1	0	1	1	1	1	Methyltransferase	domain
PCMT	PF01135.19	gi|408404001|ref|YP_006861984.1|	-	0.0034	17.1	0.0	0.005	16.6	0.0	1.3	1	0	0	1	1	1	1	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
DTC	PF18102.1	gi|408404002|ref|YP_006861985.1|	-	0.044	13.9	0.0	0.062	13.4	0.0	1.4	1	0	0	1	1	1	0	Deltex	C-terminal	domain
DUF4307	PF14155.6	gi|408404002|ref|YP_006861985.1|	-	0.11	12.3	0.5	0.21	11.4	0.3	1.5	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4307)
Nic96	PF04097.14	gi|408404003|ref|YP_006861986.1|	-	0.1	11.0	0.0	0.12	10.8	0.0	1.0	1	0	0	1	1	1	0	Nup93/Nic96
MethyltransfD12	PF02086.15	gi|408404004|ref|YP_006861987.1|	-	2.9e-56	191.0	0.0	3.4e-56	190.8	0.0	1.0	1	0	0	1	1	1	1	D12	class	N6	adenine-specific	DNA	methyltransferase
Cons_hypoth95	PF03602.15	gi|408404004|ref|YP_006861987.1|	-	0.00072	19.2	0.0	0.33	10.6	0.0	2.3	2	0	0	2	2	2	2	Conserved	hypothetical	protein	95
PRC	PF05239.16	gi|408404005|ref|YP_006861988.1|	-	0.0018	18.3	0.5	0.006	16.6	0.5	1.8	1	1	1	2	2	2	1	PRC-barrel	domain
DUF2171	PF09939.9	gi|408404005|ref|YP_006861988.1|	-	0.0061	16.8	0.2	0.009	16.3	0.2	1.2	1	0	0	1	1	1	1	Uncharacterized	protein	conserved	in	bacteria	(DUF2171)
PilP	PF04351.13	gi|408404005|ref|YP_006861988.1|	-	0.28	11.1	1.9	0.58	10.1	0.1	1.9	2	0	0	2	2	2	0	Pilus	assembly	protein,	PilP
zf-C2H2_3rep	PF18868.1	gi|408404006|ref|YP_006861989.1|	-	0.021	15.5	0.0	0.022	15.4	0.0	1.2	1	0	0	1	1	1	0	Zinc	finger	C2H2-type,	3	repeats
zf-C2H2_2	PF12756.7	gi|408404006|ref|YP_006861989.1|	-	0.031	14.6	0.1	0.032	14.6	0.1	1.0	1	0	0	1	1	1	0	C2H2	type	zinc-finger	(2	copies)
DUF629	PF04780.12	gi|408404006|ref|YP_006861989.1|	-	0.036	12.6	0.1	0.037	12.5	0.1	1.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF629)
DUF2757	PF10955.8	gi|408404006|ref|YP_006861989.1|	-	0.04	14.2	0.1	0.046	14.0	0.1	1.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2757)
zf-CCHC_2	PF13696.6	gi|408404006|ref|YP_006861989.1|	-	0.042	13.7	0.7	0.042	13.7	0.7	1.5	2	0	0	2	2	2	0	Zinc	knuckle
TF_Zn_Ribbon	PF08271.12	gi|408404006|ref|YP_006861989.1|	-	0.07	12.7	0.0	0.11	12.0	0.0	1.4	1	0	0	1	1	1	0	TFIIB	zinc-binding
RAG1_imp_bd	PF12560.8	gi|408404006|ref|YP_006861989.1|	-	0.071	12.6	0.0	0.071	12.6	0.0	1.0	1	0	0	1	1	1	0	RAG1	importin	binding
Ribo_biogen_C	PF04034.13	gi|408404008|ref|YP_006861991.1|	-	3.5e-41	139.9	0.0	4.3e-41	139.6	0.0	1.1	1	0	0	1	1	1	1	Ribosome	biogenesis	protein,	C-terminal
RLI	PF04068.15	gi|408404008|ref|YP_006861991.1|	-	0.006	16.4	0.0	0.01	15.7	0.0	1.4	1	0	0	1	1	1	1	Possible	Fer4-like	domain	in	RNase	L	inhibitor,	RLI
DTW	PF03942.15	gi|408404008|ref|YP_006861991.1|	-	0.033	13.9	0.0	0.049	13.3	0.0	1.3	1	0	0	1	1	1	0	DTW	domain
Helicase_C	PF00271.31	gi|408404009|ref|YP_006861992.1|	-	7.4e-16	58.5	0.0	1.5e-15	57.5	0.0	1.5	1	0	0	1	1	1	1	Helicase	conserved	C-terminal	domain
ResIII	PF04851.15	gi|408404009|ref|YP_006861992.1|	-	1e-15	58.1	0.0	3.3e-15	56.5	0.0	1.8	2	0	0	2	2	2	1	Type	III	restriction	enzyme,	res	subunit
DEAD	PF00270.29	gi|408404009|ref|YP_006861992.1|	-	2.5e-08	33.9	0.0	1.2e-07	31.6	0.0	2.2	2	1	0	2	2	2	1	DEAD/DEAH	box	helicase
ERCC3_RAD25_C	PF16203.5	gi|408404009|ref|YP_006861992.1|	-	1.4e-06	27.7	0.1	2.3e-06	27.0	0.1	1.3	1	0	0	1	1	1	1	ERCC3/RAD25/XPB	C-terminal	helicase
AAA_19	PF13245.6	gi|408404009|ref|YP_006861992.1|	-	0.011	16.0	0.0	3.9	7.8	0.0	2.9	2	1	0	2	2	2	0	AAA	domain
3HCDH_N	PF02737.18	gi|408404011|ref|YP_006861994.1|	-	7e-65	218.3	0.1	1.2e-64	217.5	0.1	1.4	1	0	0	1	1	1	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
3HCDH	PF00725.22	gi|408404011|ref|YP_006861994.1|	-	1.4e-28	99.4	0.1	5e-23	81.5	0.0	3.2	3	0	0	3	3	3	2	3-hydroxyacyl-CoA	dehydrogenase,	C-terminal	domain
NAD_Gly3P_dh_N	PF01210.23	gi|408404011|ref|YP_006861994.1|	-	2.2e-05	24.5	0.0	5e-05	23.3	0.0	1.6	1	0	0	1	1	1	1	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
NAD_binding_2	PF03446.15	gi|408404011|ref|YP_006861994.1|	-	0.00061	20.0	0.1	0.0011	19.2	0.1	1.4	1	0	0	1	1	1	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
F420_oxidored	PF03807.17	gi|408404011|ref|YP_006861994.1|	-	0.0022	18.6	0.2	0.035	14.7	0.1	2.5	2	1	0	2	2	2	1	NADP	oxidoreductase	coenzyme	F420-dependent
UDPG_MGDP_dh_N	PF03721.14	gi|408404011|ref|YP_006861994.1|	-	0.0039	16.8	0.0	0.0063	16.1	0.0	1.3	1	0	0	1	1	1	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
AlaDh_PNT_C	PF01262.21	gi|408404011|ref|YP_006861994.1|	-	0.071	12.4	0.1	0.13	11.5	0.1	1.4	1	0	0	1	1	1	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
DUF3335	PF11814.8	gi|408404011|ref|YP_006861994.1|	-	0.17	11.4	0.0	0.31	10.5	0.0	1.4	1	0	0	1	1	1	0	Peptidase_C39	like	family
LDcluster4	PF18306.1	gi|408404012|ref|YP_006861995.1|	-	2.9e-43	147.2	8.3	3.4e-43	147.0	8.3	1.0	1	0	0	1	1	1	1	SLOG	cluster4	family
Lysine_decarbox	PF03641.14	gi|408404012|ref|YP_006861995.1|	-	2.9e-06	27.4	0.3	2.4e-05	24.5	0.3	2.2	1	1	0	1	1	1	1	Possible	lysine	decarboxylase
DNA_processg_A	PF02481.15	gi|408404012|ref|YP_006861995.1|	-	1.7e-05	24.2	0.2	5.1e-05	22.6	0.1	1.7	2	0	0	2	2	2	1	DNA	recombination-mediator	protein	A
LSDAT_prok	PF18171.1	gi|408404012|ref|YP_006861995.1|	-	0.14	11.4	1.8	0.36	10.1	0.2	2.0	1	1	0	2	2	2	0	SLOG	in	TRPM,	prokaryote
DAGK_cat	PF00781.24	gi|408404012|ref|YP_006861995.1|	-	0.18	11.4	7.0	0.55	9.9	0.1	2.7	2	1	0	2	2	2	0	Diacylglycerol	kinase	catalytic	domain
Pribosyltran	PF00156.27	gi|408404013|ref|YP_006861996.1|	-	3.8e-24	85.0	0.2	5.6e-24	84.5	0.2	1.2	1	0	0	1	1	1	1	Phosphoribosyl	transferase	domain
PRTase_2	PF15609.6	gi|408404013|ref|YP_006861996.1|	-	0.00085	18.9	0.0	0.0096	15.4	0.0	2.1	2	0	0	2	2	2	1	Phosphoribosyl	transferase
UPRTase	PF14681.6	gi|408404013|ref|YP_006861996.1|	-	0.0048	16.4	0.0	0.0077	15.7	0.0	1.4	1	0	0	1	1	1	1	Uracil	phosphoribosyltransferase
AdoHcyase	PF05221.17	gi|408404014|ref|YP_006861997.1|	-	2.5e-73	246.8	0.0	5.4e-43	147.2	0.0	2.0	1	1	1	2	2	2	2	S-adenosyl-L-homocysteine	hydrolase
AdoHcyase_NAD	PF00670.21	gi|408404014|ref|YP_006861997.1|	-	2.8e-55	186.8	4.9	1.3e-54	184.6	4.4	2.1	2	0	0	2	2	2	1	S-adenosyl-L-homocysteine	hydrolase,	NAD	binding	domain
2-Hacid_dh_C	PF02826.19	gi|408404014|ref|YP_006861997.1|	-	4.7e-11	42.4	2.9	8.7e-11	41.5	0.7	2.3	2	2	0	2	2	2	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
IlvN	PF07991.12	gi|408404014|ref|YP_006861997.1|	-	4.2e-06	26.4	1.1	1.2e-05	25.0	1.1	1.8	1	0	0	1	1	1	1	Acetohydroxy	acid	isomeroreductase,	NADPH-binding	domain
Shikimate_DH	PF01488.20	gi|408404014|ref|YP_006861997.1|	-	0.00013	22.1	1.8	0.0081	16.2	0.5	2.3	1	1	1	2	2	2	1	Shikimate	/	quinate	5-dehydrogenase
ELFV_dehydrog	PF00208.21	gi|408404014|ref|YP_006861997.1|	-	0.0063	16.3	1.2	0.011	15.5	1.2	1.3	1	0	0	1	1	1	1	Glutamate/Leucine/Phenylalanine/Valine	dehydrogenase
GA-like	PF17573.2	gi|408404014|ref|YP_006861997.1|	-	0.0087	16.0	2.4	0.026	14.4	0.2	2.8	3	1	1	4	4	4	1	GA-like	domain
F420_oxidored	PF03807.17	gi|408404014|ref|YP_006861997.1|	-	0.022	15.3	0.5	0.088	13.4	0.5	2.0	1	0	0	1	1	1	0	NADP	oxidoreductase	coenzyme	F420-dependent
XdhC_C	PF13478.6	gi|408404014|ref|YP_006861997.1|	-	0.022	15.2	0.2	0.13	12.8	0.1	2.2	2	0	0	2	2	2	0	XdhC	Rossmann	domain
TrkA_N	PF02254.18	gi|408404014|ref|YP_006861997.1|	-	0.022	15.0	0.3	0.064	13.5	0.3	1.8	1	0	0	1	1	1	0	TrkA-N	domain
3HCDH_N	PF02737.18	gi|408404014|ref|YP_006861997.1|	-	0.11	12.4	1.2	0.25	11.2	1.2	1.6	1	0	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
AlaDh_PNT_C	PF01262.21	gi|408404014|ref|YP_006861997.1|	-	0.15	11.4	5.4	0.4	9.9	5.4	1.7	1	1	0	1	1	1	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
NAD_binding_7	PF13241.6	gi|408404014|ref|YP_006861997.1|	-	0.29	11.6	2.4	0.3	11.5	0.6	2.0	2	0	0	2	2	2	0	Putative	NAD(P)-binding
Ribophorin_I	PF04597.14	gi|408404015|ref|YP_006861998.1|	-	0.0055	16.0	0.0	0.0058	15.9	0.0	1.0	1	0	0	1	1	1	1	Ribophorin	I
ERF	PF04404.12	gi|408404015|ref|YP_006861998.1|	-	0.12	12.2	0.0	0.15	11.9	0.0	1.2	1	0	0	1	1	1	0	ERF	superfamily
Ribosomal_L40e	PF01020.17	gi|408404016|ref|YP_006861999.1|	-	0.0012	18.7	3.9	0.0014	18.5	3.9	1.1	1	0	0	1	1	1	1	Ribosomal	L40e	family
DnaJ_CXXCXGXG	PF00684.19	gi|408404016|ref|YP_006861999.1|	-	0.0054	17.1	1.6	0.0062	16.9	1.6	1.2	1	0	0	1	1	1	1	DnaJ	central	domain
PocR	PF10114.9	gi|408404016|ref|YP_006861999.1|	-	0.069	12.9	0.5	0.071	12.9	0.5	1.0	1	0	0	1	1	1	0	Sensory	domain	found	in	PocR
zf-TFIIB	PF13453.6	gi|408404016|ref|YP_006861999.1|	-	0.57	9.5	4.2	8	5.9	0.4	2.1	1	1	1	2	2	2	0	Transcription	factor	zinc-finger
Cupin_2	PF07883.11	gi|408404017|ref|YP_006862000.1|	-	4.5e-13	48.7	0.1	5.6e-13	48.4	0.1	1.1	1	0	0	1	1	1	1	Cupin	domain
ARD	PF03079.14	gi|408404017|ref|YP_006862000.1|	-	4e-07	30.4	0.0	5.3e-07	29.9	0.0	1.2	1	0	0	1	1	1	1	ARD/ARD'	family
DMSP_lyase	PF16867.5	gi|408404017|ref|YP_006862000.1|	-	4.2e-06	26.5	0.0	5.3e-06	26.2	0.0	1.1	1	0	0	1	1	1	1	Dimethlysulfonioproprionate	lyase
Cupin_1	PF00190.22	gi|408404017|ref|YP_006862000.1|	-	7.8e-06	25.6	0.0	1.2e-05	25.0	0.0	1.3	1	0	0	1	1	1	1	Cupin
AraC_binding	PF02311.19	gi|408404017|ref|YP_006862000.1|	-	0.00019	21.4	0.0	0.00025	21.0	0.0	1.2	1	0	0	1	1	1	1	AraC-like	ligand	binding	domain
CENP-C_C	PF11699.8	gi|408404017|ref|YP_006862000.1|	-	0.00086	19.5	0.0	0.001	19.2	0.0	1.1	1	0	0	1	1	1	1	Mif2/CENP-C	like
Cupin_3	PF05899.12	gi|408404017|ref|YP_006862000.1|	-	0.025	14.3	0.0	0.037	13.7	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF861)
Auxin_BP	PF02041.16	gi|408404017|ref|YP_006862000.1|	-	0.052	13.2	0.0	0.079	12.6	0.0	1.3	1	1	0	1	1	1	0	Auxin	binding	protein
SYCE1	PF15233.6	gi|408404018|ref|YP_006862001.1|	-	0.078	13.0	0.2	0.16	12.0	0.0	1.6	2	0	0	2	2	2	0	Synaptonemal	complex	central	element	protein	1
SIMPL	PF04402.14	gi|408404019|ref|YP_006862002.1|	-	9.7e-46	156.7	2.0	1.3e-45	156.4	2.0	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF541)
CinA_KH	PF18146.1	gi|408404019|ref|YP_006862002.1|	-	0.21	11.8	5.0	0.093	12.9	0.9	2.5	2	1	1	3	3	3	0	Damage-inducible	protein	CinA	KH	domain
Beta_propel	PF09826.9	gi|408404020|ref|YP_006862003.1|	-	1.7e-156	522.1	11.7	1.9e-156	521.9	11.7	1.0	1	0	0	1	1	1	1	Beta	propeller	domain
Catalase-rel	PF06628.12	gi|408404020|ref|YP_006862003.1|	-	0.0045	17.2	0.1	0.09	13.0	0.1	2.4	2	0	0	2	2	2	1	Catalase-related	immune-responsive
zinc_ribbon_10	PF10058.9	gi|408404021|ref|YP_006862004.1|	-	0.031	14.0	0.6	0.05	13.3	0.1	1.6	2	0	0	2	2	2	0	Predicted	integral	membrane	zinc-ribbon	metal-binding	protein
DUF1451	PF07295.11	gi|408404021|ref|YP_006862004.1|	-	0.15	12.1	2.1	0.31	11.1	0.2	1.9	1	1	1	2	2	2	0	Zinc-ribbon	containing	domain
HTH_16	PF12645.7	gi|408404022|ref|YP_006862005.1|	-	0.057	13.5	0.2	0.21	11.6	0.1	2.0	2	0	0	2	2	2	0	Helix-turn-helix	domain
Response_reg	PF00072.24	gi|408404023|ref|YP_006862006.1|	-	3.3e-21	75.5	0.0	3.9e-21	75.3	0.0	1.1	1	0	0	1	1	1	1	Response	regulator	receiver	domain
NDUFV3	PF15880.5	gi|408404023|ref|YP_006862006.1|	-	0.078	13.0	0.0	8.7	6.5	0.0	2.3	1	1	1	2	2	2	0	NADH	dehydrogenase	[ubiquinone]	flavoprotein	3,	mitochondrial
N6_N4_Mtase	PF01555.18	gi|408404024|ref|YP_006862007.1|	-	1.3e-39	136.3	0.0	1.8e-39	135.8	0.0	1.2	1	0	0	1	1	1	1	DNA	methylase
IlvGEDA_leader	PF08046.11	gi|408404024|ref|YP_006862007.1|	-	0.17	11.3	2.6	0.22	11.0	0.4	2.2	2	0	0	2	2	2	0	IlvGEDA	operon	leader	peptide
HTH_45	PF14947.6	gi|408404027|ref|YP_006862010.1|	-	5.3e-23	80.8	3.0	5.9e-23	80.7	3.0	1.0	1	0	0	1	1	1	1	Winged	helix-turn-helix
DUF4364	PF14277.6	gi|408404027|ref|YP_006862010.1|	-	5.9e-05	22.9	0.6	6e-05	22.9	0.6	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4364)
DUF2067	PF09840.9	gi|408404027|ref|YP_006862010.1|	-	0.0035	16.9	0.1	0.0045	16.6	0.1	1.1	1	0	0	1	1	1	1	Uncharacterized	protein	conserved	in	archaea	(DUF2067)
HTH_27	PF13463.6	gi|408404027|ref|YP_006862010.1|	-	0.029	14.9	0.1	0.037	14.5	0.1	1.2	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
ANAPC2	PF08672.11	gi|408404027|ref|YP_006862010.1|	-	0.05	14.1	0.2	0.073	13.6	0.2	1.3	1	0	0	1	1	1	0	Anaphase	promoting	complex	(APC)	subunit	2
ParBc	PF02195.18	gi|408404028|ref|YP_006862011.1|	-	3.9e-19	68.7	0.2	8.7e-19	67.6	0.2	1.6	1	0	0	1	1	1	1	ParB-like	nuclease	domain
KorB	PF08535.10	gi|408404028|ref|YP_006862011.1|	-	0.0021	18.0	0.1	0.012	15.6	0.0	2.2	1	1	0	2	2	2	1	KorB	domain
SWIB	PF02201.18	gi|408404028|ref|YP_006862011.1|	-	0.027	14.3	0.1	0.2	11.5	0.0	2.3	2	0	0	2	2	2	0	SWIB/MDM2	domain
HTH_24	PF13412.6	gi|408404028|ref|YP_006862011.1|	-	0.039	13.5	1.0	2.5	7.7	0.0	3.2	3	0	0	3	3	3	0	Winged	helix-turn-helix	DNA-binding
HTH_ParB	PF17762.1	gi|408404028|ref|YP_006862011.1|	-	0.041	13.7	0.0	0.15	11.9	0.0	2.1	1	0	0	1	1	1	0	HTH	domain	found	in	ParB	protein
HpaP	PF09483.10	gi|408404028|ref|YP_006862011.1|	-	0.2	11.9	2.3	0.84	9.9	1.1	2.2	2	0	0	2	2	2	0	Type	III	secretion	protein	(HpaP)
Chorion_3	PF05387.11	gi|408404030|ref|YP_006862013.1|	-	6	6.4	17.7	6.1	6.4	17.7	1.0	1	0	0	1	1	1	0	Chorion	family	3
Sporozoite_P67	PF05642.11	gi|408404031|ref|YP_006862014.1|	-	6.4	4.7	15.6	7.9	4.4	15.6	1.2	1	0	0	1	1	1	0	Sporozoite	P67	surface	antigen
HTH_45	PF14947.6	gi|408404032|ref|YP_006862015.1|	-	2.1e-19	69.2	3.2	2.4e-19	69.1	3.2	1.0	1	0	0	1	1	1	1	Winged	helix-turn-helix
DUF4364	PF14277.6	gi|408404032|ref|YP_006862015.1|	-	0.0037	17.0	0.7	0.005	16.6	0.7	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4364)
DcrB	PF08786.11	gi|408404033|ref|YP_006862016.1|	-	5.3e-05	23.3	0.0	7.3e-05	22.9	0.0	1.1	1	0	0	1	1	1	1	DcrB
Guanylate_kin	PF00625.21	gi|408404033|ref|YP_006862016.1|	-	0.063	13.0	0.1	0.11	12.2	0.1	1.4	1	1	0	1	1	1	0	Guanylate	kinase
YjeF_N	PF03853.15	gi|408404034|ref|YP_006862017.1|	-	2.9e-47	160.7	0.0	3.7e-47	160.4	0.0	1.0	1	0	0	1	1	1	1	YjeF-related	protein	N-terminus
Lactamase_B	PF00753.27	gi|408404035|ref|YP_006862018.1|	-	3.6e-21	76.1	2.6	5.3e-19	69.0	2.6	2.1	1	1	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Lactamase_B_2	PF12706.7	gi|408404035|ref|YP_006862018.1|	-	3e-05	23.6	0.0	6.5e-05	22.5	0.0	1.6	1	1	0	1	1	1	1	Beta-lactamase	superfamily	domain
DUF3911	PF13050.6	gi|408404037|ref|YP_006862020.1|	-	0.091	12.9	0.1	0.23	11.6	0.1	1.8	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF3911)
Herpes_UL17	PF04559.12	gi|408404037|ref|YP_006862020.1|	-	0.18	10.6	0.0	0.2	10.4	0.0	1.0	1	0	0	1	1	1	0	Herpesvirus	UL17	protein
Pur_DNA_glyco	PF02245.16	gi|408404038|ref|YP_006862021.1|	-	1.5e-59	200.4	0.0	1.7e-59	200.2	0.0	1.0	1	0	0	1	1	1	1	Methylpurine-DNA	glycosylase	(MPG)
UDG	PF03167.19	gi|408404039|ref|YP_006862022.1|	-	2.4e-46	157.5	0.0	3e-46	157.2	0.0	1.1	1	0	0	1	1	1	1	Uracil	DNA	glycosylase	superfamily
SepA	PF17080.5	gi|408404040|ref|YP_006862023.1|	-	0.0013	19.1	0.8	0.0018	18.7	0.8	1.1	1	0	0	1	1	1	1	Multidrug	Resistance	efflux	pump
DUF2339	PF10101.9	gi|408404040|ref|YP_006862023.1|	-	0.018	13.7	0.2	0.02	13.5	0.2	1.0	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2339)
Protocadherin	PF08374.11	gi|408404040|ref|YP_006862023.1|	-	0.35	10.8	0.7	0.51	10.3	0.1	1.5	1	1	1	2	2	2	0	Protocadherin
Transglut_core2	PF13369.6	gi|408404041|ref|YP_006862024.1|	-	1.2e-41	141.8	0.0	2.1e-41	141.0	0.0	1.4	1	0	0	1	1	1	1	Transglutaminase-like	superfamily
TPR_9	PF13371.6	gi|408404041|ref|YP_006862024.1|	-	1.1e-09	38.3	0.0	2e-09	37.5	0.0	1.4	1	0	0	1	1	1	1	Tetratricopeptide	repeat
TPR_19	PF14559.6	gi|408404041|ref|YP_006862024.1|	-	0.0035	17.8	0.2	0.0089	16.5	0.2	1.7	1	0	0	1	1	1	1	Tetratricopeptide	repeat
TPR_14	PF13428.6	gi|408404041|ref|YP_006862024.1|	-	0.019	15.7	0.1	0.07	14.0	0.0	2.0	2	0	0	2	2	2	0	Tetratricopeptide	repeat
TPR_1	PF00515.28	gi|408404041|ref|YP_006862024.1|	-	0.042	13.7	0.0	0.11	12.3	0.0	1.7	1	0	0	1	1	1	0	Tetratricopeptide	repeat
TPR_2	PF07719.17	gi|408404041|ref|YP_006862024.1|	-	0.089	13.0	0.0	0.23	11.6	0.0	1.8	1	0	0	1	1	1	0	Tetratricopeptide	repeat
Ammonium_transp	PF00909.21	gi|408404042|ref|YP_006862025.1|	-	2.4e-117	392.0	37.0	2.4e-117	392.0	37.0	1.3	2	0	0	2	2	2	1	Ammonium	Transporter	Family
Na_H_Exchanger	PF00999.21	gi|408404043|ref|YP_006862026.1|	-	2.2e-59	201.2	61.0	2.6e-59	200.9	61.0	1.0	1	0	0	1	1	1	1	Sodium/hydrogen	exchanger	family
LVIVD	PF08309.11	gi|408404044|ref|YP_006862027.1|	-	0.23	10.8	3.4	1.3	8.4	0.2	2.4	2	0	0	2	2	2	0	LVIVD	repeat
Frankia_peptide	PF14407.6	gi|408404046|ref|YP_006862029.1|	-	0.00011	22.1	0.0	0.00013	21.9	0.0	1.2	1	0	0	1	1	1	1	Ribosomally	synthesized	peptide	prototyped	by	Frankia	Franean1_4349.
HhH-GPD	PF00730.25	gi|408404048|ref|YP_006862031.1|	-	6.3e-11	42.7	0.0	1.1e-10	42.0	0.0	1.4	1	0	0	1	1	1	1	HhH-GPD	superfamily	base	excision	DNA	repair	protein
OGG_N	PF07934.12	gi|408404048|ref|YP_006862031.1|	-	1.6e-08	34.6	0.1	1.1e-06	28.8	0.1	2.4	1	1	0	1	1	1	1	8-oxoguanine	DNA	glycosylase,	N-terminal	domain
HHH	PF00633.23	gi|408404048|ref|YP_006862031.1|	-	0.009	15.8	0.0	0.55	10.2	0.0	2.6	2	0	0	2	2	2	1	Helix-hairpin-helix	motif
HHH_2	PF12826.7	gi|408404048|ref|YP_006862031.1|	-	0.084	13.0	0.1	0.43	10.7	0.0	2.2	3	0	0	3	3	3	0	Helix-hairpin-helix	motif
MazE_antitoxin	PF04014.18	gi|408404049|ref|YP_006862032.1|	-	0.0025	17.7	0.2	0.0045	16.9	0.2	1.5	1	0	0	1	1	1	1	Antidote-toxin	recognition	MazE,	bacterial	antitoxin
AbrB-like	PF14250.6	gi|408404049|ref|YP_006862032.1|	-	0.023	14.8	0.0	0.033	14.3	0.0	1.3	1	0	0	1	1	1	0	AbrB-like	transcriptional	regulator
AstA	PF04958.12	gi|408404049|ref|YP_006862032.1|	-	0.059	11.9	0.0	0.069	11.7	0.0	1.0	1	0	0	1	1	1	0	Arginine	N-succinyltransferase	beta	subunit
Abhydrolase_1	PF00561.20	gi|408404050|ref|YP_006862033.1|	-	4e-34	118.4	0.0	7.3e-25	88.1	0.0	2.0	1	1	1	2	2	2	2	alpha/beta	hydrolase	fold
Abhydrolase_6	PF12697.7	gi|408404050|ref|YP_006862033.1|	-	3.6e-22	80.0	0.0	4.2e-22	79.8	0.0	1.0	1	0	0	1	1	1	1	Alpha/beta	hydrolase	family
Hydrolase_4	PF12146.8	gi|408404050|ref|YP_006862033.1|	-	1.7e-17	63.5	0.0	2.3e-17	63.1	0.0	1.2	1	0	0	1	1	1	1	Serine	aminopeptidase,	S33
Ndr	PF03096.14	gi|408404050|ref|YP_006862033.1|	-	7.2e-06	24.9	0.0	3e-05	22.9	0.0	1.8	1	1	0	1	1	1	1	Ndr	family
Ser_hydrolase	PF06821.13	gi|408404050|ref|YP_006862033.1|	-	1.5e-05	24.9	0.0	0.02	14.8	0.0	2.2	2	0	0	2	2	2	2	Serine	hydrolase
Abhydrolase_3	PF07859.13	gi|408404050|ref|YP_006862033.1|	-	5.4e-05	23.2	0.0	8.1e-05	22.6	0.0	1.4	1	1	0	1	1	1	1	alpha/beta	hydrolase	fold
Abhydrolase_2	PF02230.16	gi|408404050|ref|YP_006862033.1|	-	0.00055	19.8	0.0	0.12	12.2	0.0	3.0	2	1	0	3	3	3	1	Phospholipase/Carboxylesterase
Abhydrolase_4	PF08386.10	gi|408404050|ref|YP_006862033.1|	-	0.0066	16.5	0.0	0.012	15.7	0.0	1.4	1	0	0	1	1	1	1	TAP-like	protein
Abhydrolase_5	PF12695.7	gi|408404050|ref|YP_006862033.1|	-	0.015	15.1	0.0	0.55	10.0	0.1	2.3	2	1	0	2	2	2	0	Alpha/beta	hydrolase	family
UPF0227	PF05728.12	gi|408404050|ref|YP_006862033.1|	-	0.023	14.7	0.0	0.031	14.2	0.0	1.4	1	0	0	1	1	1	0	Uncharacterised	protein	family	(UPF0227)
BAAT_C	PF08840.11	gi|408404050|ref|YP_006862033.1|	-	0.028	14.3	0.0	0.058	13.3	0.0	1.6	1	1	0	1	1	1	0	BAAT	/	Acyl-CoA	thioester	hydrolase	C	terminal
PAF-AH_p_II	PF03403.13	gi|408404050|ref|YP_006862033.1|	-	0.13	10.7	0.0	0.37	9.3	0.0	1.7	2	0	0	2	2	2	0	Platelet-activating	factor	acetylhydrolase,	isoform	II
Peptidase_S10	PF00450.22	gi|408404050|ref|YP_006862033.1|	-	0.25	10.7	0.0	0.74	9.1	0.0	1.6	2	0	0	2	2	2	0	Serine	carboxypeptidase
RVT_3	PF13456.6	gi|408404051|ref|YP_006862034.1|	-	0.00091	19.0	0.1	0.0013	18.5	0.1	1.3	1	0	0	1	1	1	1	Reverse	transcriptase-like
CAAP1	PF15335.6	gi|408404051|ref|YP_006862034.1|	-	0.022	15.3	0.3	0.05	14.2	0.3	1.6	1	1	0	1	1	1	0	Caspase	activity	and	apoptosis	inhibitor	1
TF_Zn_Ribbon	PF08271.12	gi|408404052|ref|YP_006862035.1|	-	0.028	14.0	0.3	0.05	13.1	0.3	1.4	1	0	0	1	1	1	0	TFIIB	zinc-binding
OrfB_Zn_ribbon	PF07282.11	gi|408404053|ref|YP_006862036.1|	-	6e-24	83.8	0.2	8e-24	83.4	0.2	1.2	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
Zn_Tnp_IS1595	PF12760.7	gi|408404053|ref|YP_006862036.1|	-	0.047	13.7	0.5	0.13	12.3	0.5	1.7	1	0	0	1	1	1	0	Transposase	zinc-ribbon	domain
STAS	PF01740.21	gi|408404053|ref|YP_006862036.1|	-	0.073	12.7	0.0	0.12	12.0	0.0	1.3	1	0	0	1	1	1	0	STAS	domain
OrfB_IS605	PF01385.19	gi|408404054|ref|YP_006862037.1|	-	0.11	12.7	0.1	0.11	12.7	0.1	1.1	1	0	0	1	1	1	0	Probable	transposase
HTH_OrfB_IS605	PF12323.8	gi|408404055|ref|YP_006862038.1|	-	6e-12	44.9	0.1	1.4e-11	43.7	0.1	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain
Rrf2	PF02082.20	gi|408404056|ref|YP_006862039.1|	-	0.012	16.0	0.0	0.027	14.8	0.0	1.6	2	0	0	2	2	2	0	Transcriptional	regulator
TrmB	PF01978.19	gi|408404056|ref|YP_006862039.1|	-	0.038	13.9	0.1	0.052	13.4	0.1	1.2	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
PPP5	PF08321.12	gi|408404056|ref|YP_006862039.1|	-	0.1	12.9	0.0	0.14	12.5	0.0	1.1	1	0	0	1	1	1	0	PPP5	TPR	repeat	region
YgaB	PF14182.6	gi|408404057|ref|YP_006862040.1|	-	0.021	15.2	2.6	0.031	14.6	2.6	1.3	1	0	0	1	1	1	0	YgaB-like	protein
Bunya_G1	PF03557.15	gi|408404057|ref|YP_006862040.1|	-	0.025	12.6	0.1	0.027	12.5	0.1	1.0	1	0	0	1	1	1	0	Bunyavirus	glycoprotein	G1
FapA	PF03961.13	gi|408404057|ref|YP_006862040.1|	-	0.035	12.7	1.8	0.038	12.6	1.8	1.1	1	0	0	1	1	1	0	Flagellar	Assembly	Protein	A
LsmAD	PF06741.13	gi|408404057|ref|YP_006862040.1|	-	0.056	14.0	2.4	0.06	13.9	1.2	1.7	1	1	0	1	1	1	0	LsmAD	domain
DUF3841	PF12952.7	gi|408404057|ref|YP_006862040.1|	-	0.063	13.1	1.8	0.15	11.9	1.8	1.7	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF3841)
Copper-bind	PF00127.20	gi|408404060|ref|YP_006862043.1|	-	6.6e-11	42.5	0.0	9.2e-11	42.1	0.0	1.2	1	0	0	1	1	1	1	Copper	binding	proteins,	plastocyanin/azurin	family
Cupredoxin_1	PF13473.6	gi|408404060|ref|YP_006862043.1|	-	2.1e-06	27.8	0.0	4.4e-06	26.7	0.0	1.6	1	1	0	1	1	1	1	Cupredoxin-like	domain
Cytochrome_B	PF00033.19	gi|408404061|ref|YP_006862044.1|	-	5e-27	95.0	13.4	5e-27	95.0	13.4	2.9	2	1	1	3	3	3	1	Cytochrome	b/b6/petB
Cytochrom_B_N_2	PF13631.6	gi|408404061|ref|YP_006862044.1|	-	3.4e-25	89.0	8.9	3.4e-25	89.0	8.9	3.3	3	1	1	4	4	4	1	Cytochrome	b(N-terminal)/b6/petB
Cytochrom_B_C	PF00032.17	gi|408404061|ref|YP_006862044.1|	-	1.2e-08	35.2	3.2	1.2e-08	35.2	3.2	3.6	5	1	0	5	5	5	1	Cytochrome	b(C-terminal)/b6/petD
UPF0542	PF15086.6	gi|408404061|ref|YP_006862044.1|	-	0.0022	17.9	0.2	0.011	15.6	0.2	2.2	1	0	0	1	1	1	1	Uncharacterised	protein	family	UPF0542
DUF4405	PF14358.6	gi|408404061|ref|YP_006862044.1|	-	0.023	15.3	5.6	0.023	15.3	5.6	3.8	4	0	0	4	4	4	0	Domain	of	unknown	function	(DUF4405)
SIT	PF15330.6	gi|408404061|ref|YP_006862044.1|	-	3.8	8.0	9.6	8.3	6.9	1.6	2.9	3	0	0	3	3	3	0	SHP2-interacting	transmembrane	adaptor	protein,	SIT
Rieske	PF00355.26	gi|408404062|ref|YP_006862045.1|	-	6e-07	29.3	0.0	9.6e-07	28.7	0.0	1.3	1	1	0	1	1	1	1	Rieske	[2Fe-2S]	domain
Pentapeptide	PF00805.22	gi|408404063|ref|YP_006862046.1|	-	3.9e-28	96.7	26.7	1.3e-10	40.7	0.2	4.8	2	1	4	6	6	6	4	Pentapeptide	repeats	(8	copies)
Pentapeptide_4	PF13599.6	gi|408404063|ref|YP_006862046.1|	-	1.1e-17	64.0	2.7	8.9e-08	32.2	0.0	2.4	1	1	2	3	3	3	3	Pentapeptide	repeats	(9	copies)
Pentapeptide_3	PF13576.6	gi|408404063|ref|YP_006862046.1|	-	1.5e-08	34.7	0.1	0.0069	16.5	0.1	3.4	1	1	2	3	3	3	2	Pentapeptide	repeats	(9	copies)
DUF1965	PF09248.10	gi|408404063|ref|YP_006862046.1|	-	0.035	13.9	0.0	0.087	12.6	0.0	1.7	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1965)
TP_methylase	PF00590.20	gi|408404064|ref|YP_006862047.1|	-	6.6e-16	58.9	0.0	1.3e-15	57.9	0.0	1.5	2	0	0	2	2	2	1	Tetrapyrrole	(Corrin/Porphyrin)	Methylases
DUF357	PF04010.13	gi|408404064|ref|YP_006862047.1|	-	2.8e-15	56.1	0.1	1.4e-14	53.9	0.1	2.1	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF357)
Peptidase_M20	PF01546.28	gi|408404065|ref|YP_006862048.1|	-	2.5e-29	102.5	0.8	4.2e-29	101.7	0.8	1.4	1	1	0	1	1	1	1	Peptidase	family	M20/M25/M40
M20_dimer	PF07687.14	gi|408404065|ref|YP_006862048.1|	-	4.2e-14	52.4	0.0	7.1e-14	51.6	0.0	1.4	1	0	0	1	1	1	1	Peptidase	dimerisation	domain
Peptidase_M28	PF04389.17	gi|408404065|ref|YP_006862048.1|	-	0.00014	21.6	0.0	0.00025	20.8	0.0	1.4	1	0	0	1	1	1	1	Peptidase	family	M28
Peptidase_M42	PF05343.14	gi|408404065|ref|YP_006862048.1|	-	0.00072	18.7	0.3	0.11	11.5	0.0	2.7	1	1	1	3	3	3	2	M42	glutamyl	aminopeptidase
RimK	PF08443.11	gi|408404066|ref|YP_006862049.1|	-	1.8e-31	109.2	0.0	2.5e-31	108.7	0.0	1.2	1	0	0	1	1	1	1	RimK-like	ATP-grasp	domain
GSH-S_ATP	PF02955.16	gi|408404066|ref|YP_006862049.1|	-	1.1e-08	34.6	0.0	1.7e-08	34.0	0.0	1.2	1	0	0	1	1	1	1	Prokaryotic	glutathione	synthetase,	ATP-grasp	domain
CPSase_L_D2	PF02786.17	gi|408404066|ref|YP_006862049.1|	-	2.1e-07	30.7	0.1	1.1e-06	28.3	0.1	2.2	2	1	0	2	2	2	1	Carbamoyl-phosphate	synthase	L	chain,	ATP	binding	domain
ATP-grasp_3	PF02655.14	gi|408404066|ref|YP_006862049.1|	-	3.2e-07	30.5	0.0	6.2e-07	29.6	0.0	1.4	1	0	0	1	1	1	1	ATP-grasp	domain
ATP-grasp	PF02222.22	gi|408404066|ref|YP_006862049.1|	-	4.9e-06	26.2	0.0	1.2e-05	25.0	0.0	1.6	1	1	0	1	1	1	1	ATP-grasp	domain
ATPgrasp_ST	PF14397.6	gi|408404066|ref|YP_006862049.1|	-	0.002	17.4	0.0	0.33	10.1	0.0	2.5	1	1	2	3	3	3	1	Sugar-transfer	associated	ATP-grasp
Rimk_N	PF18030.1	gi|408404066|ref|YP_006862049.1|	-	0.0081	16.5	0.1	0.028	14.8	0.0	1.9	2	0	0	2	2	2	1	RimK	PreATP-grasp	domain
ATP-grasp_5	PF13549.6	gi|408404066|ref|YP_006862049.1|	-	0.024	14.1	0.1	0.038	13.4	0.1	1.3	1	0	0	1	1	1	0	ATP-grasp	domain
GARS_A	PF01071.19	gi|408404066|ref|YP_006862049.1|	-	0.063	13.0	0.0	0.098	12.4	0.0	1.3	1	0	0	1	1	1	0	Phosphoribosylglycinamide	synthetase,	ATP-grasp	(A)	domain
ATP-grasp_2	PF08442.10	gi|408404066|ref|YP_006862049.1|	-	0.1	12.1	0.0	0.28	10.7	0.0	1.7	1	0	0	1	1	1	0	ATP-grasp	domain
zinc_ribbon_4	PF13717.6	gi|408404067|ref|YP_006862050.1|	-	1.3e-06	28.2	1.4	0.029	14.3	0.2	2.3	1	1	1	2	2	2	2	zinc-ribbon	domain
zinc_ribbon_5	PF13719.6	gi|408404067|ref|YP_006862050.1|	-	1.7e-06	27.7	0.1	0.051	13.3	0.0	2.1	2	0	0	2	2	2	2	zinc-ribbon	domain
HypA	PF01155.19	gi|408404067|ref|YP_006862050.1|	-	4e-05	23.6	0.3	4.3e-05	23.5	0.3	1.0	1	0	0	1	1	1	1	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
zf-RING_7	PF02591.15	gi|408404067|ref|YP_006862050.1|	-	8.3e-05	22.7	1.8	0.024	14.8	0.1	2.3	2	0	0	2	2	2	1	C4-type	zinc	ribbon	domain
Prok-RING_1	PF14446.6	gi|408404067|ref|YP_006862050.1|	-	0.00016	21.5	4.7	0.00041	20.2	4.7	1.6	1	1	0	1	1	1	1	Prokaryotic	RING	finger	family	1
PhnA_Zn_Ribbon	PF08274.12	gi|408404067|ref|YP_006862050.1|	-	0.00024	21.0	0.5	0.29	11.1	0.0	2.1	2	0	0	2	2	2	2	PhnA	Zinc-Ribbon
zf-HYPF	PF07503.12	gi|408404067|ref|YP_006862050.1|	-	0.00025	20.8	1.5	0.0019	17.9	1.5	1.9	1	1	0	1	1	1	1	HypF	finger
zf-ribbon_3	PF13248.6	gi|408404067|ref|YP_006862050.1|	-	0.00046	19.5	1.5	0.4	10.2	0.1	2.2	2	0	0	2	2	2	2	zinc-ribbon	domain
zf_UBZ	PF18439.1	gi|408404067|ref|YP_006862050.1|	-	0.0011	18.5	1.6	0.68	9.6	0.3	2.3	2	0	0	2	2	2	2	Ubiquitin-Binding	Zinc	Finger
UPF0547	PF10571.9	gi|408404067|ref|YP_006862050.1|	-	0.0012	18.9	4.2	0.032	14.3	0.8	2.2	2	0	0	2	2	2	1	Uncharacterised	protein	family	UPF0547
zf-C4_Topoisom	PF01396.19	gi|408404067|ref|YP_006862050.1|	-	0.0019	18.0	1.5	1.2	9.0	0.3	2.1	2	0	0	2	2	2	2	Topoisomerase	DNA	binding	C4	zinc	finger
Zn-ribbon_8	PF09723.10	gi|408404067|ref|YP_006862050.1|	-	0.0019	18.3	2.6	0.0028	17.7	2.1	1.6	1	1	0	1	1	1	1	Zinc	ribbon	domain
ADK_lid	PF05191.14	gi|408404067|ref|YP_006862050.1|	-	0.0025	17.8	0.3	0.013	15.5	0.0	2.0	2	0	0	2	2	2	1	Adenylate	kinase,	active	site	lid
TF_Zn_Ribbon	PF08271.12	gi|408404067|ref|YP_006862050.1|	-	0.0036	16.8	2.9	0.0059	16.1	2.9	1.4	1	1	0	1	1	1	1	TFIIB	zinc-binding
zinc_ribbon_2	PF13240.6	gi|408404067|ref|YP_006862050.1|	-	0.0038	16.9	1.6	1.9	8.3	0.1	2.3	2	0	0	2	2	2	2	zinc-ribbon	domain
YacG	PF03884.14	gi|408404067|ref|YP_006862050.1|	-	0.0057	16.4	1.1	2.6	7.8	0.0	2.2	2	0	0	2	2	2	2	DNA	gyrase	inhibitor	YacG
zf-TFIIB	PF13453.6	gi|408404067|ref|YP_006862050.1|	-	0.0084	15.4	3.0	0.018	14.4	3.3	1.4	1	1	0	1	1	1	1	Transcription	factor	zinc-finger
DNA_ligase_ZBD	PF03119.16	gi|408404067|ref|YP_006862050.1|	-	0.01	15.9	1.8	2.5	8.2	0.2	2.3	2	0	0	2	2	2	2	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
zf-IS66	PF13005.7	gi|408404067|ref|YP_006862050.1|	-	0.01	16.2	3.5	0.22	12.0	0.3	2.3	1	1	1	2	2	2	0	zinc-finger	binding	domain	of	transposase	IS66
Lar_restr_allev	PF14354.6	gi|408404067|ref|YP_006862050.1|	-	0.011	16.1	0.7	0.017	15.5	0.7	1.4	1	1	0	1	1	1	0	Restriction	alleviation	protein	Lar
Ribosomal_S27e	PF01667.17	gi|408404067|ref|YP_006862050.1|	-	0.013	15.1	1.7	0.028	14.1	1.7	1.6	1	1	0	1	1	1	0	Ribosomal	protein	S27
DZR	PF12773.7	gi|408404067|ref|YP_006862050.1|	-	0.015	15.4	0.4	0.023	14.7	0.4	1.3	1	1	0	1	1	1	0	Double	zinc	ribbon
zf-piccolo	PF05715.13	gi|408404067|ref|YP_006862050.1|	-	0.019	15.1	0.1	0.023	14.8	0.1	1.2	1	0	0	1	1	1	0	Piccolo	Zn-finger
zinc-ribbons_6	PF07191.12	gi|408404067|ref|YP_006862050.1|	-	0.019	14.9	0.7	0.048	13.7	0.7	1.6	1	1	0	1	1	1	0	zinc-ribbons
IBR	PF01485.21	gi|408404067|ref|YP_006862050.1|	-	0.021	15.1	0.4	0.026	14.8	0.4	1.2	1	0	0	1	1	1	0	IBR	domain,	a	half	RING-finger	domain
A2L_zn_ribbon	PF08792.10	gi|408404067|ref|YP_006862050.1|	-	0.037	13.8	1.6	0.33	10.7	0.1	2.1	2	0	0	2	2	2	0	A2L	zinc	ribbon	domain
Cys_rich_CPXG	PF14255.6	gi|408404067|ref|YP_006862050.1|	-	0.037	13.9	1.9	3.2	7.7	0.2	2.1	2	0	0	2	2	2	0	Cysteine-rich	CPXCG
Zn_Tnp_IS1	PF03811.13	gi|408404067|ref|YP_006862050.1|	-	0.038	13.7	0.3	9	6.1	0.1	2.2	2	0	0	2	2	2	0	InsA	N-terminal	domain
OrfB_Zn_ribbon	PF07282.11	gi|408404067|ref|YP_006862050.1|	-	0.042	13.8	0.2	0.062	13.2	0.2	1.2	1	0	0	1	1	1	0	Putative	transposase	DNA-binding	domain
Ogr_Delta	PF04606.12	gi|408404067|ref|YP_006862050.1|	-	0.047	13.7	1.0	7.2	6.7	0.1	2.1	2	0	0	2	2	2	0	Ogr/Delta-like	zinc	finger
CpXC	PF14353.6	gi|408404067|ref|YP_006862050.1|	-	0.056	13.5	2.3	4.4	7.4	0.2	2.1	1	1	1	2	2	2	0	CpXC	protein
zinc_ribbon_9	PF14369.6	gi|408404067|ref|YP_006862050.1|	-	0.056	13.7	4.3	0.31	11.3	4.5	1.9	1	1	1	2	2	2	0	zinc-ribbon
Anti-TRAP	PF15777.5	gi|408404067|ref|YP_006862050.1|	-	0.062	13.3	0.6	0.079	12.9	0.6	1.2	1	0	0	1	1	1	0	Tryptophan	RNA-binding	attenuator	protein	inhibitory	protein
zf-ACC	PF17848.1	gi|408404067|ref|YP_006862050.1|	-	0.065	13.3	4.2	1.9	8.7	0.4	2.2	2	0	0	2	2	2	0	Acetyl-coA	carboxylase	zinc	finger	domain
Rubredoxin	PF00301.20	gi|408404067|ref|YP_006862050.1|	-	0.082	12.9	1.9	5.6	7.1	0.0	2.3	2	0	0	2	2	2	0	Rubredoxin
TerY_C	PF15616.6	gi|408404067|ref|YP_006862050.1|	-	0.092	12.9	0.5	0.66	10.1	0.5	1.9	1	1	0	1	1	1	0	TerY-C	metal	binding	domain
DNA_RNApol_7kD	PF03604.13	gi|408404067|ref|YP_006862050.1|	-	0.095	12.4	3.5	0.43	10.3	3.5	2.0	1	1	0	1	1	1	0	DNA	directed	RNA	polymerase,	7	kDa	subunit
zf-H2C2_2	PF13465.6	gi|408404067|ref|YP_006862050.1|	-	0.098	13.1	0.8	12	6.5	0.0	2.1	2	0	0	2	2	2	0	Zinc-finger	double	domain
Zn_ribbon_SprT	PF17283.2	gi|408404067|ref|YP_006862050.1|	-	0.11	12.5	0.3	10	6.2	0.1	2.1	2	0	0	2	2	2	0	SprT-like	zinc	ribbon	domain
zf-C2H2_3	PF13878.6	gi|408404067|ref|YP_006862050.1|	-	0.12	12.2	0.5	2.5	8.0	0.0	2.1	2	0	0	2	2	2	0	zinc-finger	of	acetyl-transferase	ESCO
zf-C2H2	PF00096.26	gi|408404067|ref|YP_006862050.1|	-	0.16	12.5	0.8	5.9	7.6	0.1	2.1	2	0	0	2	2	2	0	Zinc	finger,	C2H2	type
Sgf11	PF08209.11	gi|408404067|ref|YP_006862050.1|	-	0.17	11.5	0.9	11	5.7	0.1	2.1	2	0	0	2	2	2	0	Sgf11	(transcriptional	regulation	protein)
DUF3797	PF12677.7	gi|408404067|ref|YP_006862050.1|	-	0.26	11.2	3.6	2.5	8.0	0.1	2.2	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF3797)
Zn_Tnp_IS1595	PF12760.7	gi|408404067|ref|YP_006862050.1|	-	0.32	11.0	2.8	2.6	8.1	0.1	2.1	1	1	1	2	2	2	0	Transposase	zinc-ribbon	domain
zf-tcix	PF14952.6	gi|408404067|ref|YP_006862050.1|	-	0.4	10.3	2.4	7.2	6.3	0.2	2.1	2	0	0	2	2	2	0	Putative	treble-clef,	zinc-finger,	Zn-binding
HMGL-like	PF00682.19	gi|408404068|ref|YP_006862051.1|	-	3.8e-71	239.8	1.2	4.6e-71	239.5	1.2	1.1	1	0	0	1	1	1	1	HMGL-like
Lyase_1	PF00206.20	gi|408404069|ref|YP_006862052.1|	-	4.8e-53	180.6	1.3	3e-52	178.0	0.0	2.0	2	0	0	2	2	2	1	Lyase
ASL_C2	PF14698.6	gi|408404069|ref|YP_006862052.1|	-	1.4e-11	44.9	0.0	4.6e-11	43.3	0.0	1.9	1	0	0	1	1	1	1	Argininosuccinate	lyase	C-terminal
14-3-3	PF00244.20	gi|408404069|ref|YP_006862052.1|	-	0.06	12.8	1.6	1.5	8.3	0.0	3.2	3	0	0	3	3	3	0	14-3-3	protein
DUF354	PF04007.12	gi|408404071|ref|YP_006862054.1|	-	2e-47	161.9	0.0	2.4e-47	161.6	0.0	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF354)
LpxB	PF02684.15	gi|408404071|ref|YP_006862054.1|	-	0.0023	16.8	0.1	0.0031	16.4	0.1	1.1	1	0	0	1	1	1	1	Lipid-A-disaccharide	synthetase
Usp	PF00582.26	gi|408404071|ref|YP_006862054.1|	-	0.071	13.6	0.1	0.24	11.9	0.0	2.0	2	0	0	2	2	2	0	Universal	stress	protein	family
Glyco_tran_28_C	PF04101.16	gi|408404071|ref|YP_006862054.1|	-	0.082	12.9	0.3	0.27	11.2	0.3	1.9	1	1	0	1	1	1	0	Glycosyltransferase	family	28	C-terminal	domain
CutA1	PF03091.15	gi|408404073|ref|YP_006862056.1|	-	2.8e-31	107.3	0.1	3.2e-31	107.1	0.1	1.0	1	0	0	1	1	1	1	CutA1	divalent	ion	tolerance	protein
ABC_tran_Xtn	PF12848.7	gi|408404073|ref|YP_006862056.1|	-	0.077	13.0	0.1	0.11	12.6	0.1	1.2	1	0	0	1	1	1	0	ABC	transporter
eRF1_1	PF03463.15	gi|408404074|ref|YP_006862057.1|	-	6.6e-21	74.7	0.3	1.2e-20	73.9	0.3	1.3	1	0	0	1	1	1	1	eRF1	domain	1
eRF1_3	PF03465.15	gi|408404074|ref|YP_006862057.1|	-	9.2e-12	45.4	0.9	3e-11	43.8	0.3	2.2	3	0	0	3	3	3	1	eRF1	domain	3
eRF1_2	PF03464.15	gi|408404074|ref|YP_006862057.1|	-	0.0035	17.6	0.0	0.0092	16.3	0.0	1.8	1	0	0	1	1	1	1	eRF1	domain	2
T2SSE_N	PF05157.15	gi|408404075|ref|YP_006862058.1|	-	0.024	14.9	0.0	0.046	14.0	0.0	1.5	2	0	0	2	2	2	0	Type	II	secretion	system	(T2SS),	protein	E,	N-terminal	domain
Fe_dep_repr_C	PF02742.15	gi|408404076|ref|YP_006862059.1|	-	5.6e-20	71.2	0.8	8.9e-20	70.6	0.8	1.3	1	0	0	1	1	1	1	Iron	dependent	repressor,	metal	binding	and	dimerisation	domain
Fe_dep_repress	PF01325.19	gi|408404076|ref|YP_006862059.1|	-	9.1e-14	51.4	0.5	1.6e-13	50.7	0.5	1.3	1	0	0	1	1	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
MarR_2	PF12802.7	gi|408404076|ref|YP_006862059.1|	-	0.00017	21.4	0.0	0.0003	20.6	0.0	1.3	1	0	0	1	1	1	1	MarR	family
Rrf2	PF02082.20	gi|408404076|ref|YP_006862059.1|	-	0.00063	20.0	0.1	0.0011	19.3	0.1	1.4	1	0	0	1	1	1	1	Transcriptional	regulator
MarR	PF01047.22	gi|408404076|ref|YP_006862059.1|	-	0.00066	19.6	0.0	0.0011	18.9	0.0	1.3	1	0	0	1	1	1	1	MarR	family
HTH_5	PF01022.20	gi|408404076|ref|YP_006862059.1|	-	0.0018	18.1	0.0	0.0042	16.9	0.0	1.7	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_27	PF13463.6	gi|408404076|ref|YP_006862059.1|	-	0.0099	16.4	0.0	0.016	15.7	0.0	1.3	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
HTH_37	PF13744.6	gi|408404076|ref|YP_006862059.1|	-	0.018	15.0	0.0	0.035	14.1	0.0	1.5	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_Crp_2	PF13545.6	gi|408404076|ref|YP_006862059.1|	-	0.021	14.8	0.0	0.037	14.0	0.0	1.4	1	0	0	1	1	1	0	Crp-like	helix-turn-helix	domain
HTH_45	PF14947.6	gi|408404076|ref|YP_006862059.1|	-	0.025	14.6	0.1	0.038	14.0	0.1	1.3	1	0	0	1	1	1	0	Winged	helix-turn-helix
HTH_1	PF00126.27	gi|408404076|ref|YP_006862059.1|	-	0.025	14.5	0.0	0.058	13.3	0.0	1.6	1	1	0	1	1	1	0	Bacterial	regulatory	helix-turn-helix	protein,	lysR	family
HTH_IclR	PF09339.10	gi|408404076|ref|YP_006862059.1|	-	0.033	14.0	0.0	0.064	13.1	0.0	1.5	2	0	0	2	2	2	0	IclR	helix-turn-helix	domain
TrmB	PF01978.19	gi|408404076|ref|YP_006862059.1|	-	0.034	14.0	0.2	0.059	13.3	0.2	1.4	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
IF2_N	PF04760.15	gi|408404076|ref|YP_006862059.1|	-	0.035	13.9	0.3	0.28	11.0	0.0	2.1	2	0	0	2	2	2	0	Translation	initiation	factor	IF-2,	N-terminal	region
HTH_6	PF01418.17	gi|408404076|ref|YP_006862059.1|	-	0.039	13.9	0.0	0.081	12.9	0.0	1.5	1	0	0	1	1	1	0	Helix-turn-helix	domain,	rpiR	family
NLPC_P60	PF00877.19	gi|408404076|ref|YP_006862059.1|	-	0.082	13.0	0.0	0.24	11.5	0.0	1.7	1	1	1	2	2	2	0	NlpC/P60	family
TrmB	PF01978.19	gi|408404077|ref|YP_006862060.1|	-	3.2e-23	81.4	0.0	1.1e-22	79.7	0.0	1.9	2	0	0	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
Regulator_TrmB	PF11495.8	gi|408404077|ref|YP_006862060.1|	-	7.5e-09	35.1	0.0	1e-08	34.7	0.0	1.2	1	0	0	1	1	1	1	Archaeal	transcriptional	regulator	TrmB
HTH_IclR	PF09339.10	gi|408404077|ref|YP_006862060.1|	-	1.2e-05	25.0	0.0	2.7e-05	23.9	0.0	1.5	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
MarR	PF01047.22	gi|408404077|ref|YP_006862060.1|	-	0.00053	19.9	0.0	0.0013	18.7	0.0	1.7	1	0	0	1	1	1	1	MarR	family
HTH_27	PF13463.6	gi|408404077|ref|YP_006862060.1|	-	0.0019	18.7	0.0	0.0046	17.4	0.0	1.6	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
HTH_24	PF13412.6	gi|408404077|ref|YP_006862060.1|	-	0.0059	16.1	0.0	0.011	15.3	0.0	1.5	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_36	PF13730.6	gi|408404077|ref|YP_006862060.1|	-	0.01	15.8	0.1	0.032	14.2	0.1	1.9	1	1	0	1	1	1	0	Helix-turn-helix	domain
MarR_2	PF12802.7	gi|408404077|ref|YP_006862060.1|	-	0.011	15.6	0.0	0.021	14.7	0.0	1.5	1	0	0	1	1	1	0	MarR	family
Rrf2	PF02082.20	gi|408404077|ref|YP_006862060.1|	-	0.014	15.7	0.0	0.032	14.6	0.0	1.5	1	0	0	1	1	1	0	Transcriptional	regulator
HTH_29	PF13551.6	gi|408404077|ref|YP_006862060.1|	-	0.016	15.2	0.9	0.2	11.7	0.0	3.0	3	0	0	3	3	3	0	Winged	helix-turn	helix
Penicillinase_R	PF03965.16	gi|408404077|ref|YP_006862060.1|	-	0.024	15.0	0.0	0.066	13.6	0.0	1.8	2	0	0	2	2	2	0	Penicillinase	repressor
PadR	PF03551.14	gi|408404077|ref|YP_006862060.1|	-	0.062	13.3	0.0	0.19	11.7	0.0	1.8	1	0	0	1	1	1	0	Transcriptional	regulator	PadR-like	family
G-alpha	PF00503.20	gi|408404077|ref|YP_006862060.1|	-	0.097	11.8	0.0	0.13	11.4	0.0	1.1	1	0	0	1	1	1	0	G-protein	alpha	subunit
HTH_9	PF08221.11	gi|408404077|ref|YP_006862060.1|	-	0.13	12.4	0.0	0.26	11.4	0.0	1.5	1	0	0	1	1	1	0	RNA	polymerase	III	subunit	RPC82	helix-turn-helix	domain
FaeA	PF04703.12	gi|408404077|ref|YP_006862060.1|	-	0.16	12.3	0.3	0.67	10.4	0.0	2.2	2	1	0	2	2	2	0	FaeA-like	protein
UPF0561	PF10573.9	gi|408404077|ref|YP_006862060.1|	-	0.46	10.6	8.1	0.94	9.6	8.1	1.4	1	0	0	1	1	1	0	Uncharacterised	protein	family	UPF0561
Radical_SAM	PF04055.21	gi|408404078|ref|YP_006862061.1|	-	2e-18	67.3	0.1	2e-18	67.3	0.1	2.5	2	0	0	2	2	2	1	Radical	SAM	superfamily
Fer4_12	PF13353.6	gi|408404078|ref|YP_006862061.1|	-	6.7e-07	29.7	0.0	6.7e-07	29.7	0.0	1.7	2	0	0	2	2	2	1	4Fe-4S	single	cluster	domain
Fer4_14	PF13394.6	gi|408404078|ref|YP_006862061.1|	-	7.5e-07	29.3	0.0	7.5e-07	29.3	0.0	2.0	2	0	0	2	2	2	1	4Fe-4S	single	cluster	domain
ComA	PF02679.15	gi|408404078|ref|YP_006862061.1|	-	0.1	12.1	0.0	0.21	11.0	0.0	1.5	1	0	0	1	1	1	0	(2R)-phospho-3-sulfolactate	synthase	(ComA)
HTH_45	PF14947.6	gi|408404079|ref|YP_006862062.1|	-	0.0034	17.3	0.0	0.0069	16.3	0.0	1.5	1	0	0	1	1	1	1	Winged	helix-turn-helix
Rieske	PF00355.26	gi|408404080|ref|YP_006862063.1|	-	1.7e-06	27.9	0.0	2.8e-06	27.2	0.0	1.4	1	1	0	1	1	1	1	Rieske	[2Fe-2S]	domain
TAT_signal	PF10518.9	gi|408404080|ref|YP_006862063.1|	-	6.8e-05	22.5	0.7	0.00011	21.9	0.7	1.3	1	0	0	1	1	1	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
UCR_Fe-S_N	PF10399.9	gi|408404080|ref|YP_006862063.1|	-	0.057	12.8	0.3	0.11	11.9	0.3	1.5	1	0	0	1	1	1	0	Ubiquitinol-cytochrome	C	reductase	Fe-S	subunit	TAT	signal
Peptidase_M3	PF01432.20	gi|408404081|ref|YP_006862064.1|	-	2.4e-07	30.4	4.2	4.1e-07	29.6	0.5	2.3	1	1	0	2	2	2	1	Peptidase	family	M3
Peptidase_M32	PF02074.15	gi|408404081|ref|YP_006862064.1|	-	6.3e-07	28.5	0.8	0.00014	20.8	0.0	2.4	2	0	0	2	2	2	2	Carboxypeptidase	Taq	(M32)	metallopeptidase
Proteasome	PF00227.26	gi|408404082|ref|YP_006862065.1|	-	2.5e-54	183.6	2.0	2.9e-54	183.4	2.0	1.0	1	0	0	1	1	1	1	Proteasome	subunit
Cupredoxin_1	PF13473.6	gi|408404084|ref|YP_006862067.1|	-	0.061	13.4	0.1	0.07	13.3	0.1	1.2	1	0	0	1	1	1	0	Cupredoxin-like	domain
Aconitase	PF00330.20	gi|408404085|ref|YP_006862068.1|	-	1.6e-155	518.6	0.0	1.8e-155	518.4	0.0	1.0	1	0	0	1	1	1	1	Aconitase	family	(aconitate	hydratase)
DUF521	PF04412.13	gi|408404085|ref|YP_006862068.1|	-	0.0018	17.0	0.0	0.0029	16.4	0.0	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF521)
Aconitase_C	PF00694.19	gi|408404086|ref|YP_006862069.1|	-	6.9e-37	126.7	0.0	1e-36	126.2	0.0	1.2	1	0	0	1	1	1	1	Aconitase	C-terminal	domain
Aconitase_2_N	PF06434.13	gi|408404086|ref|YP_006862069.1|	-	0.23	11.0	0.0	5.1	6.7	0.0	2.1	1	1	0	1	1	1	0	Aconitate	hydratase	2	N-terminus
Pribosyltran	PF00156.27	gi|408404087|ref|YP_006862070.1|	-	0.0078	15.7	0.0	0.013	15.0	0.0	1.3	1	0	0	1	1	1	1	Phosphoribosyl	transferase	domain
Glyco_hydro_77	PF02446.17	gi|408404088|ref|YP_006862071.1|	-	0.012	14.5	0.0	0.013	14.4	0.0	1.0	1	0	0	1	1	1	0	4-alpha-glucanotransferase
NT5C	PF06941.12	gi|408404090|ref|YP_006862073.1|	-	1.4e-16	60.9	0.1	1.7e-16	60.6	0.1	1.0	1	0	0	1	1	1	1	5'	nucleotidase,	deoxy	(Pyrimidine),	cytosolic	type	C	protein	(NT5C)
zf_UBZ	PF18439.1	gi|408404091|ref|YP_006862074.1|	-	0.02	14.5	0.1	0.038	13.6	0.1	1.5	1	0	0	1	1	1	0	Ubiquitin-Binding	Zinc	Finger
C1_4	PF07975.12	gi|408404091|ref|YP_006862074.1|	-	0.054	13.7	0.6	0.074	13.3	0.4	1.4	1	1	0	1	1	1	0	TFIIH	C1-like	domain
zf-C2H2_3	PF13878.6	gi|408404091|ref|YP_006862074.1|	-	0.088	12.6	0.5	0.14	12.0	0.5	1.4	1	1	0	1	1	1	0	zinc-finger	of	acetyl-transferase	ESCO
zf-CCHC_2	PF13696.6	gi|408404091|ref|YP_006862074.1|	-	0.21	11.5	2.0	0.33	10.8	2.0	1.3	1	0	0	1	1	1	0	Zinc	knuckle
DUF423	PF04241.15	gi|408404092|ref|YP_006862075.1|	-	0.059	13.6	0.1	0.063	13.5	0.1	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF423)
NnrS	PF05940.12	gi|408404093|ref|YP_006862076.1|	-	0.0008	18.9	42.2	0.0021	17.5	42.2	1.6	1	1	0	1	1	1	1	NnrS	protein
COX1	PF00115.20	gi|408404093|ref|YP_006862076.1|	-	0.0013	17.6	13.3	0.0013	17.6	13.3	3.2	1	1	1	2	2	2	1	Cytochrome	C	and	Quinol	oxidase	polypeptide	I
Kelch_1	PF01344.25	gi|408404093|ref|YP_006862076.1|	-	0.17	11.5	0.1	0.44	10.2	0.1	1.6	1	0	0	1	1	1	0	Kelch	motif
TMEM51	PF15345.6	gi|408404094|ref|YP_006862077.1|	-	0.025	14.4	0.0	0.025	14.4	0.0	1.1	1	0	0	1	1	1	0	Transmembrane	protein	51
zf-C2H2	PF00096.26	gi|408404095|ref|YP_006862078.1|	-	0.0055	17.1	0.0	0.0078	16.6	0.0	1.3	1	0	0	1	1	1	1	Zinc	finger,	C2H2	type
zf-C2H2_4	PF13894.6	gi|408404095|ref|YP_006862078.1|	-	0.011	16.5	0.0	0.017	15.9	0.0	1.3	1	0	0	1	1	1	0	C2H2-type	zinc	finger
Zn_ribbon_SprT	PF17283.2	gi|408404095|ref|YP_006862078.1|	-	0.013	15.4	0.1	0.013	15.3	0.1	1.1	1	0	0	1	1	1	0	SprT-like	zinc	ribbon	domain
zf-Di19	PF05605.12	gi|408404095|ref|YP_006862078.1|	-	0.015	15.6	0.1	0.016	15.5	0.1	1.3	1	0	0	1	1	1	0	Drought	induced	19	protein	(Di19),	zinc-binding
zf-C2H2_9	PF16293.5	gi|408404095|ref|YP_006862078.1|	-	0.08	12.8	0.1	0.11	12.3	0.1	1.3	1	0	0	1	1	1	0	C2H2	type	zinc-finger	(1	copy)
Epimerase	PF01370.21	gi|408404096|ref|YP_006862079.1|	-	1.7e-24	86.6	0.0	2.9e-24	85.9	0.0	1.4	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
GDP_Man_Dehyd	PF16363.5	gi|408404096|ref|YP_006862079.1|	-	1.2e-19	70.9	0.0	7.2e-19	68.4	0.0	2.1	1	1	0	1	1	1	1	GDP-mannose	4,6	dehydratase
RmlD_sub_bind	PF04321.17	gi|408404096|ref|YP_006862079.1|	-	0.0019	17.3	0.0	0.0052	15.9	0.0	1.7	1	0	0	1	1	1	1	RmlD	substrate	binding	domain
UDPG_MGDP_dh_N	PF03721.14	gi|408404096|ref|YP_006862079.1|	-	0.0043	16.6	0.0	0.013	15.0	0.0	1.9	2	0	0	2	2	2	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
Polysacc_synt_2	PF02719.15	gi|408404096|ref|YP_006862079.1|	-	0.029	13.5	0.0	0.049	12.7	0.0	1.4	1	0	0	1	1	1	0	Polysaccharide	biosynthesis	protein
Glyco_transf_4	PF13439.6	gi|408404096|ref|YP_006862079.1|	-	0.13	12.3	0.0	0.41	10.6	0.0	1.8	2	0	0	2	2	2	0	Glycosyltransferase	Family	4
PIG-L	PF02585.17	gi|408404097|ref|YP_006862080.1|	-	0.0028	18.3	0.1	0.0061	17.2	0.1	1.5	1	1	0	1	1	1	1	GlcNAc-PI	de-N-acetylase
PIG-L	PF02585.17	gi|408404098|ref|YP_006862081.1|	-	2.3e-21	76.8	0.1	3.4e-21	76.3	0.1	1.2	1	0	0	1	1	1	1	GlcNAc-PI	de-N-acetylase
ATPgrasp_Ter	PF15632.6	gi|408404099|ref|YP_006862082.1|	-	4.8e-25	87.8	0.0	7.3e-25	87.2	0.0	1.3	1	0	0	1	1	1	1	ATP-grasp	in	the	biosynthetic	pathway	with	Ter	operon
ATP-grasp_3	PF02655.14	gi|408404099|ref|YP_006862082.1|	-	2.9e-13	50.2	0.0	5.5e-13	49.3	0.0	1.4	1	0	0	1	1	1	1	ATP-grasp	domain
ATP-grasp_4	PF13535.6	gi|408404099|ref|YP_006862082.1|	-	1.5e-05	24.7	0.0	4.3e-05	23.2	0.0	1.8	1	1	0	1	1	1	1	ATP-grasp	domain
CPSase_L_D2	PF02786.17	gi|408404099|ref|YP_006862082.1|	-	0.0033	16.9	0.0	0.0092	15.5	0.0	1.8	1	1	0	1	1	1	1	Carbamoyl-phosphate	synthase	L	chain,	ATP	binding	domain
DUF1297	PF06973.12	gi|408404099|ref|YP_006862082.1|	-	0.051	13.1	0.2	0.15	11.6	0.1	1.9	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF1297)
PHP	PF02811.19	gi|408404100|ref|YP_006862083.1|	-	5.4e-12	46.3	0.5	1.3e-11	45.1	0.5	1.5	1	1	0	1	1	1	1	PHP	domain
PHP_C	PF13263.6	gi|408404100|ref|YP_006862083.1|	-	0.006	16.3	0.1	0.027	14.2	0.0	2.2	2	0	0	2	2	2	1	PHP-associated
RNase_P_p30	PF01876.16	gi|408404100|ref|YP_006862083.1|	-	0.089	12.2	0.1	1.3	8.5	0.1	2.4	1	1	1	2	2	2	0	RNase	P	subunit	p30
Big_7	PF17957.1	gi|408404101|ref|YP_006862084.1|	-	5.6e-17	62.3	30.8	2.3e-10	41.1	10.4	4.4	4	1	1	5	5	5	2	Bacterial	Ig	domain
F5_F8_type_C	PF00754.25	gi|408404101|ref|YP_006862084.1|	-	1.7e-14	54.0	6.5	1.7e-14	54.0	6.5	2.7	1	1	2	3	3	3	1	F5/8	type	C	domain
Big_3_4	PF13754.6	gi|408404101|ref|YP_006862084.1|	-	9.9e-05	22.0	1.2	0.34	10.7	0.0	3.1	3	0	0	3	3	3	2	Domain	of	unknown	function
HYR	PF02494.16	gi|408404101|ref|YP_006862084.1|	-	0.013	15.8	3.6	0.89	9.9	0.1	3.9	4	0	0	4	4	4	0	HYR	domain
Big_3_3	PF13750.6	gi|408404101|ref|YP_006862084.1|	-	0.25	11.0	12.1	1.6	8.3	0.2	3.5	2	1	1	3	3	3	0	Bacterial	Ig-like	domain	(group	3)
Big_5	PF13205.6	gi|408404101|ref|YP_006862084.1|	-	8.5	7.1	16.0	9.4	7.0	6.4	3.7	2	2	0	2	2	2	0	Bacterial	Ig-like	domain
GSDH	PF07995.11	gi|408404103|ref|YP_006862086.1|	-	4.2e-08	32.9	0.0	5.4e-08	32.5	0.0	1.0	1	0	0	1	1	1	1	Glucose	/	Sorbosone	dehydrogenase
Lectin_N	PF03954.14	gi|408404104|ref|YP_006862087.1|	-	0.13	12.0	0.0	0.15	11.8	0.0	1.2	1	0	0	1	1	1	0	Hepatic	lectin,	N-terminal	domain
PsbN	PF02468.15	gi|408404104|ref|YP_006862087.1|	-	0.39	10.6	2.6	2.7	7.9	0.9	2.1	2	0	0	2	2	2	0	Photosystem	II	reaction	centre	N	protein	(psbN)
ATPgrasp_Ter	PF15632.6	gi|408404105|ref|YP_006862088.1|	-	1.2e-12	47.7	0.0	6.4e-12	45.4	0.0	1.9	2	0	0	2	2	2	1	ATP-grasp	in	the	biosynthetic	pathway	with	Ter	operon
ATP-grasp_3	PF02655.14	gi|408404105|ref|YP_006862088.1|	-	2.3e-10	40.7	0.0	4.4e-09	36.6	0.0	2.6	2	1	0	2	2	2	1	ATP-grasp	domain
ATP-grasp_4	PF13535.6	gi|408404105|ref|YP_006862088.1|	-	7.7e-06	25.6	0.1	3.5e-05	23.5	0.1	2.0	1	1	0	1	1	1	1	ATP-grasp	domain
CPSase_L_D2	PF02786.17	gi|408404105|ref|YP_006862088.1|	-	0.00032	20.3	0.0	0.075	12.5	0.0	2.3	2	0	0	2	2	2	2	Carbamoyl-phosphate	synthase	L	chain,	ATP	binding	domain
Dala_Dala_lig_C	PF07478.13	gi|408404105|ref|YP_006862088.1|	-	0.0068	16.0	0.0	0.012	15.1	0.0	1.3	1	0	0	1	1	1	1	D-ala	D-ala	ligase	C-terminus
RimK	PF08443.11	gi|408404105|ref|YP_006862088.1|	-	0.0083	15.7	0.0	0.014	15.0	0.0	1.3	1	0	0	1	1	1	1	RimK-like	ATP-grasp	domain
BshC	PF10079.9	gi|408404106|ref|YP_006862089.1|	-	0.025	13.3	0.0	0.25	10.0	0.0	2.4	3	0	0	3	3	3	0	Bacillithiol	biosynthesis	BshC
Glycos_transf_2	PF00535.26	gi|408404107|ref|YP_006862090.1|	-	2.4e-22	79.6	0.0	3.6e-22	79.0	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_tranf_2_3	PF13641.6	gi|408404107|ref|YP_006862090.1|	-	6.4e-19	68.8	0.0	9.3e-19	68.2	0.0	1.2	1	0	0	1	1	1	1	Glycosyltransferase	like	family	2
Glyco_trans_2_3	PF13632.6	gi|408404107|ref|YP_006862090.1|	-	4.4e-16	59.4	0.1	4.4e-16	59.4	0.1	2.6	2	1	0	2	2	2	1	Glycosyl	transferase	family	group	2
Glyco_transf_21	PF13506.6	gi|408404107|ref|YP_006862090.1|	-	1.8e-14	53.6	0.0	3e-14	52.9	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	transferase	family	21
Glyco_tranf_2_4	PF13704.6	gi|408404107|ref|YP_006862090.1|	-	0.16	12.5	0.0	0.33	11.5	0.0	1.5	1	0	0	1	1	1	0	Glycosyl	transferase	family	2
Maf_N	PF08383.11	gi|408404109|ref|YP_006862092.1|	-	0.17	11.7	0.0	0.34	10.7	0.0	1.4	1	0	0	1	1	1	0	Maf	N-terminal	region
DUF892	PF05974.12	gi|408404110|ref|YP_006862093.1|	-	6.3e-18	65.3	1.2	6.3e-18	65.3	1.2	2.2	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF892)
Ferritin	PF00210.24	gi|408404110|ref|YP_006862093.1|	-	0.001	19.0	0.4	0.001	19.0	0.4	2.8	3	1	0	3	3	3	1	Ferritin-like	domain
Coat_F	PF07875.12	gi|408404110|ref|YP_006862093.1|	-	0.43	10.8	0.1	0.43	10.8	0.1	2.7	4	0	0	4	4	4	0	Coat	F	domain
KN17_SH3	PF18131.1	gi|408404111|ref|YP_006862094.1|	-	0.12	12.5	0.0	0.22	11.7	0.0	1.4	1	0	0	1	1	1	0	KN17	SH3-like	C-terminal	domain
zf-TFIIB	PF13453.6	gi|408404114|ref|YP_006862097.1|	-	1.5e-11	43.5	0.1	2.6e-11	42.7	0.1	1.4	1	0	0	1	1	1	1	Transcription	factor	zinc-finger
zf-met	PF12874.7	gi|408404115|ref|YP_006862098.1|	-	8.3e-05	22.8	0.1	0.0002	21.7	0.1	1.7	1	0	0	1	1	1	1	Zinc-finger	of	C2H2	type
zf-C2H2	PF00096.26	gi|408404115|ref|YP_006862098.1|	-	0.00025	21.3	0.2	0.00042	20.6	0.2	1.4	1	0	0	1	1	1	1	Zinc	finger,	C2H2	type
zf-C2H2_jaz	PF12171.8	gi|408404115|ref|YP_006862098.1|	-	0.00081	19.6	0.1	0.0024	18.1	0.0	1.8	2	0	0	2	2	2	1	Zinc-finger	double-stranded	RNA-binding
zf-C2H2_4	PF13894.6	gi|408404115|ref|YP_006862098.1|	-	0.00086	20.0	0.1	0.0017	19.0	0.1	1.5	1	0	0	1	1	1	1	C2H2-type	zinc	finger
zf-C2H2_6	PF13912.6	gi|408404115|ref|YP_006862098.1|	-	0.0058	16.6	0.1	0.0095	15.9	0.1	1.3	1	0	0	1	1	1	1	C2H2-type	zinc	finger
DUF2171	PF09939.9	gi|408404115|ref|YP_006862098.1|	-	0.0061	16.8	0.1	0.012	15.8	0.1	1.5	1	1	0	1	1	1	1	Uncharacterized	protein	conserved	in	bacteria	(DUF2171)
bPH_2	PF03703.14	gi|408404115|ref|YP_006862098.1|	-	0.13	12.5	0.0	0.23	11.7	0.0	1.3	1	0	0	1	1	1	0	Bacterial	PH	domain
Isochorismatase	PF00857.20	gi|408404116|ref|YP_006862099.1|	-	4.7e-14	53.0	0.0	5.9e-14	52.6	0.0	1.1	1	0	0	1	1	1	1	Isochorismatase	family
Xylo_C	PF12529.8	gi|408404117|ref|YP_006862100.1|	-	0.067	12.8	0.1	0.077	12.6	0.1	1.1	1	0	0	1	1	1	0	Xylosyltransferase	C	terminal
IML1	PF12257.8	gi|408404117|ref|YP_006862100.1|	-	0.11	11.6	0.1	0.11	11.6	0.1	1.0	1	0	0	1	1	1	0	Vacuolar	membrane-associated	protein	Iml1
vATP-synt_AC39	PF01992.16	gi|408404117|ref|YP_006862100.1|	-	0.14	11.6	0.0	0.14	11.6	0.0	1.0	1	0	0	1	1	1	0	ATP	synthase	(C/AC39)	subunit
DUF2171	PF09939.9	gi|408404118|ref|YP_006862101.1|	-	0.0058	16.9	0.0	0.0069	16.6	0.0	1.1	1	0	0	1	1	1	1	Uncharacterized	protein	conserved	in	bacteria	(DUF2171)
DUF677	PF05055.12	gi|408404119|ref|YP_006862102.1|	-	0.048	12.5	0.3	0.06	12.2	0.3	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF677)
Elf-1_N	PF12310.8	gi|408404119|ref|YP_006862102.1|	-	0.073	13.6	0.1	0.088	13.3	0.1	1.2	1	0	0	1	1	1	0	Transcription	factor	protein	N	terminal
DUF2721	PF11026.8	gi|408404120|ref|YP_006862103.1|	-	0.051	13.5	0.0	0.059	13.3	0.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2721)
Cation_ATPase_C	PF00689.21	gi|408404120|ref|YP_006862103.1|	-	0.081	12.6	3.4	0.1	12.3	3.4	1.1	1	0	0	1	1	1	0	Cation	transporting	ATPase,	C-terminus
DUF2207	PF09972.9	gi|408404120|ref|YP_006862103.1|	-	0.083	11.6	0.2	0.099	11.4	0.2	1.1	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2207)
LapA_dom	PF06305.11	gi|408404120|ref|YP_006862103.1|	-	8.9	6.2	10.4	0.86	9.5	4.4	2.0	1	1	1	2	2	2	0	Lipopolysaccharide	assembly	protein	A	domain
HTH_45	PF14947.6	gi|408404121|ref|YP_006862104.1|	-	1.2e-07	31.6	0.0	1.4e-07	31.4	0.0	1.0	1	0	0	1	1	1	1	Winged	helix-turn-helix
MarR	PF01047.22	gi|408404121|ref|YP_006862104.1|	-	0.00044	20.1	0.0	0.00079	19.3	0.0	1.4	1	0	0	1	1	1	1	MarR	family
DUF1495	PF07381.11	gi|408404121|ref|YP_006862104.1|	-	0.086	12.7	0.0	0.092	12.6	0.0	1.2	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain	(DUF1495)
Copper-bind	PF00127.20	gi|408404122|ref|YP_006862105.1|	-	8.6e-16	58.2	1.2	1.8e-14	53.9	1.2	2.2	1	1	0	1	1	1	1	Copper	binding	proteins,	plastocyanin/azurin	family
Cupredoxin_1	PF13473.6	gi|408404122|ref|YP_006862105.1|	-	8.6e-13	48.3	0.0	9.8e-13	48.1	0.0	1.2	1	0	0	1	1	1	1	Cupredoxin-like	domain
DUF2127	PF09900.9	gi|408404123|ref|YP_006862106.1|	-	0.0036	17.6	2.9	0.0051	17.1	2.9	1.3	1	1	0	1	1	1	1	Predicted	membrane	protein	(DUF2127)
DUF4064	PF13273.6	gi|408404123|ref|YP_006862106.1|	-	0.22	11.8	9.8	0.037	14.3	5.4	1.9	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF4064)
LptF_LptG	PF03739.14	gi|408404124|ref|YP_006862107.1|	-	0.25	10.1	5.0	0.4	9.5	5.0	1.3	1	0	0	1	1	1	0	Lipopolysaccharide	export	system	permease	LptF/LptG
DUF4267	PF14087.6	gi|408404124|ref|YP_006862107.1|	-	0.37	10.9	8.3	0.13	12.3	5.3	1.6	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4267)
DUF3487	PF11990.8	gi|408404124|ref|YP_006862107.1|	-	3.1	7.7	9.2	1.3	8.9	1.6	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3487)
Bac_export_1	PF01311.20	gi|408404125|ref|YP_006862108.1|	-	4.9	6.6	17.6	29	4.1	17.6	1.9	1	1	0	1	1	1	0	Bacterial	export	proteins,	family	1
T2SSM	PF04612.12	gi|408404126|ref|YP_006862109.1|	-	0.056	13.5	0.1	0.08	13.0	0.1	1.2	1	0	0	1	1	1	0	Type	II	secretion	system	(T2SS),	protein	M
DUF4439	PF14530.6	gi|408404126|ref|YP_006862109.1|	-	0.063	14.0	0.1	0.1	13.3	0.1	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4439)
EIID-AGA	PF03613.14	gi|408404126|ref|YP_006862109.1|	-	0.13	11.4	0.0	0.14	11.3	0.0	1.2	1	0	0	1	1	1	0	PTS	system	mannose/fructose/sorbose	family	IID	component
SdrD_B	PF17210.3	gi|408404128|ref|YP_006862111.1|	-	1.5e-05	25.2	3.2	1.5e-05	25.2	3.2	1.9	1	1	1	2	2	2	1	SdrD	B-like	domain
CarbopepD_reg_2	PF13715.6	gi|408404128|ref|YP_006862111.1|	-	0.00056	19.9	2.6	0.00056	19.9	2.6	2.2	1	1	2	3	3	3	1	CarboxypepD_reg-like	domain
CarboxypepD_reg	PF13620.6	gi|408404128|ref|YP_006862111.1|	-	0.0014	18.9	3.0	0.0014	18.9	3.0	2.2	1	1	0	2	2	2	1	Carboxypeptidase	regulatory-like	domain
Dioxygenase_C	PF00775.21	gi|408404128|ref|YP_006862111.1|	-	0.0032	16.9	0.1	0.0048	16.4	0.1	1.2	1	0	0	1	1	1	1	Dioxygenase
Lyase_8_C	PF02884.17	gi|408404128|ref|YP_006862111.1|	-	0.013	16.0	1.1	0.032	14.7	0.1	1.9	2	0	0	2	2	2	0	Polysaccharide	lyase	family	8,	C-terminal	beta-sandwich	domain
GAPT	PF11770.8	gi|408404128|ref|YP_006862111.1|	-	0.018	14.9	0.0	0.021	14.7	0.0	1.1	1	0	0	1	1	1	0	GRB2-binding	adapter	(GAPT)
MucBP	PF06458.12	gi|408404128|ref|YP_006862111.1|	-	0.52	11.4	9.9	1.6	9.8	9.9	1.9	1	1	0	1	1	1	0	MucBP	domain
Flagellin_D3	PF08884.11	gi|408404128|ref|YP_006862111.1|	-	1.8	9.0	14.8	8.1	6.9	14.8	1.9	1	1	0	1	1	1	0	Flagellin	D3	domain
DUF515	PF04415.12	gi|408404130|ref|YP_006862113.1|	-	0.18	10.2	1.4	0.22	9.9	1.4	1.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF515)
MCR_beta_N	PF02783.15	gi|408404130|ref|YP_006862113.1|	-	0.26	10.9	3.5	0.27	10.8	2.5	1.5	1	1	1	2	2	2	0	Methyl-coenzyme	M	reductase	beta	subunit,	N-terminal	domain
SMC_ScpA	PF02616.14	gi|408404131|ref|YP_006862114.1|	-	1e-08	35.4	0.6	0.0014	18.6	0.1	2.2	2	0	0	2	2	2	2	Segregation	and	condensation	protein	ScpA
CNDH2_C	PF16858.5	gi|408404131|ref|YP_006862114.1|	-	1.8e-07	31.4	0.1	2.3e-07	31.0	0.1	1.2	1	0	0	1	1	1	1	Condensin	II	complex	subunit	CAP-H2	or	CNDH2,	C-term
Rad21_Rec8	PF04824.16	gi|408404131|ref|YP_006862114.1|	-	0.072	12.4	0.0	0.13	11.5	0.0	1.4	1	0	0	1	1	1	0	Conserved	region	of	Rad21	/	Rec8	like	protein
GP88	PF17338.2	gi|408404131|ref|YP_006862114.1|	-	0.14	11.6	0.0	0.2	11.1	0.0	1.2	1	0	0	1	1	1	0	Gene	product	88
SMC_ScpB	PF04079.16	gi|408404132|ref|YP_006862115.1|	-	3.3e-36	124.3	0.5	3.9e-36	124.1	0.5	1.0	1	0	0	1	1	1	1	Segregation	and	condensation	complex	subunit	ScpB
HTH_20	PF12840.7	gi|408404132|ref|YP_006862115.1|	-	0.029	14.4	0.0	0.51	10.4	0.0	2.3	2	0	0	2	2	2	0	Helix-turn-helix	domain
Ribosomal_S8e	PF01201.22	gi|408404133|ref|YP_006862116.1|	-	1e-27	97.0	5.4	1.2e-27	96.8	5.4	1.1	1	0	0	1	1	1	1	Ribosomal	protein	S8e
Lin-8	PF03353.15	gi|408404134|ref|YP_006862117.1|	-	0.12	11.9	0.0	0.14	11.7	0.0	1.1	1	0	0	1	1	1	0	Ras-mediated	vulval-induction	antagonist
SRP19	PF01922.17	gi|408404135|ref|YP_006862118.1|	-	1.3e-16	61.3	0.1	1.6e-16	61.0	0.1	1.1	1	0	0	1	1	1	1	SRP19	protein
SurA_N_3	PF13624.6	gi|408404135|ref|YP_006862118.1|	-	0.01	15.6	0.5	0.013	15.2	0.5	1.2	1	0	0	1	1	1	0	SurA	N-terminal	domain
ApbA_C	PF08546.11	gi|408404135|ref|YP_006862118.1|	-	0.087	13.0	0.9	0.58	10.4	0.9	1.9	1	1	0	1	1	1	0	Ketopantoate	reductase	PanE/ApbA	C	terminal
LAL_C2	PF18603.1	gi|408404135|ref|YP_006862118.1|	-	0.095	12.9	0.1	0.16	12.1	0.1	1.5	1	1	0	1	1	1	0	L-amino	acid	ligase	C-terminal	domain	2
Gar1	PF04410.14	gi|408404136|ref|YP_006862119.1|	-	7.7e-07	29.0	0.0	8.7e-07	28.8	0.0	1.0	1	0	0	1	1	1	1	Gar1/Naf1	RNA	binding	region
TFIIB	PF00382.19	gi|408404137|ref|YP_006862120.1|	-	3.4e-24	84.7	3.7	7.5e-12	45.1	0.0	2.3	2	0	0	2	2	2	2	Transcription	factor	TFIIB	repeat
TF_Zn_Ribbon	PF08271.12	gi|408404137|ref|YP_006862120.1|	-	3.2e-07	29.7	6.1	3.8e-07	29.5	3.3	2.2	2	0	0	2	2	2	1	TFIIB	zinc-binding
Cyclin_C	PF02984.19	gi|408404137|ref|YP_006862120.1|	-	0.0061	16.6	0.0	0.52	10.4	0.0	2.5	2	0	0	2	2	2	1	Cyclin,	C-terminal	domain
OrfB_Zn_ribbon	PF07282.11	gi|408404137|ref|YP_006862120.1|	-	0.018	14.9	2.0	0.018	14.9	2.0	2.0	2	0	0	2	2	2	0	Putative	transposase	DNA-binding	domain
Cyclin_N	PF00134.23	gi|408404137|ref|YP_006862120.1|	-	0.076	12.8	2.6	0.2	11.4	2.3	1.9	1	1	1	2	2	2	0	Cyclin,	N-terminal	domain
A2L_zn_ribbon	PF08792.10	gi|408404137|ref|YP_006862120.1|	-	1.9	8.3	9.3	7.8	6.3	6.5	2.5	2	0	0	2	2	2	0	A2L	zinc	ribbon	domain
DZR	PF12773.7	gi|408404137|ref|YP_006862120.1|	-	3.3	7.8	8.5	0.23	11.5	1.9	2.1	2	0	0	2	2	2	0	Double	zinc	ribbon
Auto_anti-p27	PF06677.12	gi|408404137|ref|YP_006862120.1|	-	3.7	7.8	7.1	1.5	9.1	3.3	2.2	2	0	0	2	2	2	0	Sjogren's	syndrome/scleroderma	autoantigen	1	(Autoantigen	p27)
DUF4379	PF14311.6	gi|408404138|ref|YP_006862121.1|	-	0.0064	16.8	1.5	0.0092	16.3	1.5	1.3	1	0	0	1	1	1	1	Probable	Zinc-ribbon	domain
NOB1_Zn_bind	PF08772.11	gi|408404138|ref|YP_006862121.1|	-	0.036	14.2	0.2	0.04	14.1	0.2	1.1	1	0	0	1	1	1	0	Nin	one	binding	(NOB1)	Zn-ribbon	like
zf-ribbon_3	PF13248.6	gi|408404138|ref|YP_006862121.1|	-	0.067	12.6	2.6	0.48	9.9	0.1	2.1	2	0	0	2	2	2	0	zinc-ribbon	domain
zinc_ribbon_2	PF13240.6	gi|408404138|ref|YP_006862121.1|	-	0.1	12.4	4.4	1.7	8.5	0.5	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
DUF2321	PF10083.9	gi|408404138|ref|YP_006862121.1|	-	0.1	12.3	0.9	0.11	12.1	0.9	1.1	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2321)
DUF3487	PF11990.8	gi|408404139|ref|YP_006862122.1|	-	0.019	14.8	2.9	0.021	14.7	2.9	1.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3487)
DUF3040	PF11239.8	gi|408404139|ref|YP_006862122.1|	-	0.2	11.9	2.8	0.26	11.6	2.8	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3040)
SKG6	PF08693.10	gi|408404139|ref|YP_006862122.1|	-	1.7	8.1	7.6	3.9	7.0	0.2	2.2	2	0	0	2	2	2	0	Transmembrane	alpha-helix	domain
DUF3185	PF11381.8	gi|408404139|ref|YP_006862122.1|	-	1.7	8.7	12.5	0.59	10.2	4.5	2.2	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF3185)
DUF202	PF02656.15	gi|408404139|ref|YP_006862122.1|	-	6	7.4	8.9	1.4	9.4	3.3	2.0	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF202)
DUF2065	PF09838.9	gi|408404139|ref|YP_006862122.1|	-	7.3	6.7	11.2	1.1	9.4	2.7	2.6	2	1	0	2	2	2	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2065)
PhosphMutase	PF10143.9	gi|408404140|ref|YP_006862123.1|	-	4.4e-42	143.8	0.0	6.4e-42	143.3	0.0	1.2	1	0	0	1	1	1	1	2,3-bisphosphoglycerate-independent	phosphoglycerate	mutase
Metalloenzyme	PF01676.18	gi|408404140|ref|YP_006862123.1|	-	1.5e-26	93.3	0.2	1.7e-26	93.1	0.2	1.0	1	0	0	1	1	1	1	Metalloenzyme	superfamily
Phosphodiest	PF01663.22	gi|408404140|ref|YP_006862123.1|	-	0.00023	20.9	0.0	0.0038	16.9	0.0	2.1	2	0	0	2	2	2	1	Type	I	phosphodiesterase	/	nucleotide	pyrophosphatase
HIT	PF01230.23	gi|408404142|ref|YP_006862125.1|	-	1e-11	45.4	0.0	6.4e-05	23.6	0.1	2.6	3	0	0	3	3	3	2	HIT	domain
GalP_UDP_transf	PF01087.22	gi|408404142|ref|YP_006862125.1|	-	1.4e-09	38.7	0.3	1.2e-08	35.6	0.0	2.1	2	0	0	2	2	2	1	Galactose-1-phosphate	uridyl	transferase,	N-terminal	domain
DUF4921	PF16268.5	gi|408404142|ref|YP_006862125.1|	-	3.9e-08	32.6	0.1	9.4e-08	31.3	0.1	1.5	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF4921)
DcpS_C	PF11969.8	gi|408404142|ref|YP_006862125.1|	-	4.7e-05	23.8	0.0	0.062	13.8	0.0	2.4	2	0	0	2	2	2	2	Scavenger	mRNA	decapping	enzyme	C-term	binding
GalP_UDP_tr_C	PF02744.17	gi|408404142|ref|YP_006862125.1|	-	0.00039	20.2	0.0	0.00084	19.1	0.0	1.5	2	0	0	2	2	2	1	Galactose-1-phosphate	uridyl	transferase,	C-terminal	domain
DUF4931	PF16285.5	gi|408404142|ref|YP_006862125.1|	-	0.0022	17.3	0.0	0.0049	16.2	0.0	1.5	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4931)
FAM70	PF14967.6	gi|408404144|ref|YP_006862127.1|	-	2.8	7.3	5.9	4.1	6.8	5.9	1.2	1	0	0	1	1	1	0	FAM70	protein
PrgI	PF12666.7	gi|408404145|ref|YP_006862128.1|	-	2.3	9.0	6.6	3.4	8.4	4.1	2.2	1	1	1	2	2	2	0	PrgI	family	protein
Epimerase_2	PF02350.19	gi|408404147|ref|YP_006862130.1|	-	6.8e-29	100.8	0.0	6.3e-26	91.0	0.0	2.1	2	0	0	2	2	2	2	UDP-N-acetylglucosamine	2-epimerase
NTP_transf_4	PF13562.6	gi|408404148|ref|YP_006862131.1|	-	1.8e-14	54.3	0.0	3.9e-14	53.2	0.0	1.5	2	0	0	2	2	2	1	Sugar	nucleotidyl	transferase
Hexapep	PF00132.24	gi|408404148|ref|YP_006862131.1|	-	0.071	12.9	6.1	0.82	9.5	0.4	4.5	3	2	0	4	4	4	0	Bacterial	transferase	hexapeptide	(six	repeats)
NTP_transferase	PF00483.23	gi|408404149|ref|YP_006862132.1|	-	1.1e-36	126.7	0.0	1.2e-36	126.6	0.0	1.0	1	0	0	1	1	1	1	Nucleotidyl	transferase
NTP_transf_3	PF12804.7	gi|408404149|ref|YP_006862132.1|	-	4.5e-11	43.4	0.0	5.8e-11	43.0	0.0	1.2	1	0	0	1	1	1	1	MobA-like	NTP	transferase	domain
CTP_transf_3	PF02348.19	gi|408404149|ref|YP_006862132.1|	-	1.2e-05	25.4	0.0	1.8e-05	24.8	0.0	1.3	1	0	0	1	1	1	1	Cytidylyltransferase
IspD	PF01128.19	gi|408404149|ref|YP_006862132.1|	-	0.0029	17.4	0.0	0.0052	16.6	0.0	1.4	1	0	0	1	1	1	1	2-C-methyl-D-erythritol	4-phosphate	cytidylyltransferase
Phos_pyr_kin	PF08543.12	gi|408404150|ref|YP_006862133.1|	-	2.4e-87	292.4	0.2	3.1e-87	292.0	0.2	1.1	1	0	0	1	1	1	1	Phosphomethylpyrimidine	kinase
ThiP_synth	PF10120.9	gi|408404150|ref|YP_006862133.1|	-	2.4e-59	199.7	0.3	2.8e-58	196.2	0.0	2.4	3	0	0	3	3	3	1	Thiamine-phosphate	synthase
PfkB	PF00294.24	gi|408404150|ref|YP_006862133.1|	-	1.8e-16	60.3	0.0	2.9e-16	59.7	0.0	1.2	1	0	0	1	1	1	1	pfkB	family	carbohydrate	kinase
HK	PF02110.15	gi|408404150|ref|YP_006862133.1|	-	5.9e-05	22.6	0.4	9.7e-05	21.9	0.4	1.3	1	0	0	1	1	1	1	Hydroxyethylthiazole	kinase	family
Carb_kinase	PF01256.17	gi|408404150|ref|YP_006862133.1|	-	0.036	13.5	0.1	0.054	13.0	0.1	1.4	1	0	0	1	1	1	0	Carbohydrate	kinase
Spo0A_C	PF08769.11	gi|408404150|ref|YP_006862133.1|	-	0.054	13.6	0.1	0.95	9.6	0.0	2.5	2	0	0	2	2	2	0	Sporulation	initiation	factor	Spo0A	C	terminal
DUF5556	PF17711.1	gi|408404150|ref|YP_006862133.1|	-	0.12	12.2	0.0	0.24	11.3	0.0	1.4	1	0	0	1	1	1	0	Family	of	unknown	function	(DUF5556)
DUF4983	PF16356.5	gi|408404151|ref|YP_006862134.1|	-	0.61	10.9	3.7	11	6.9	0.2	3.1	3	1	0	3	3	3	0	Domain	of	unknown	function	(DUF4983)
HemolysinCabind	PF00353.19	gi|408404152|ref|YP_006862135.1|	-	2e-12	46.8	22.4	5.4e-08	32.7	2.1	4.1	2	1	2	4	4	4	3	RTX	calcium-binding	nonapeptide	repeat	(4	copies)
Mad3_BUB1_II	PF08171.11	gi|408404152|ref|YP_006862135.1|	-	0.18	12.0	0.1	0.3	11.3	0.1	1.3	1	0	0	1	1	1	0	Mad3/BUB1	homology	region	2
Transp_cyt_pur	PF02133.15	gi|408404153|ref|YP_006862136.1|	-	3.2e-32	111.9	38.7	6.8e-32	110.8	38.7	1.4	1	1	0	1	1	1	1	Permease	for	cytosine/purines,	uracil,	thiamine,	allantoin
ATP-grasp_2	PF08442.10	gi|408404154|ref|YP_006862137.1|	-	1.4e-40	139.0	0.0	2.4e-40	138.3	0.0	1.4	1	0	0	1	1	1	1	ATP-grasp	domain
ATP-grasp_5	PF13549.6	gi|408404154|ref|YP_006862137.1|	-	5.6e-13	48.9	0.0	1.5e-12	47.5	0.0	1.7	1	1	0	1	1	1	1	ATP-grasp	domain
Ligase_CoA	PF00549.19	gi|408404154|ref|YP_006862137.1|	-	3e-12	46.6	1.3	5.4e-12	45.8	1.3	1.4	1	0	0	1	1	1	1	CoA-ligase
ATP-grasp	PF02222.22	gi|408404154|ref|YP_006862137.1|	-	0.00082	19.0	0.0	0.0015	18.1	0.0	1.5	1	0	0	1	1	1	1	ATP-grasp	domain
CPSase_L_D2	PF02786.17	gi|408404154|ref|YP_006862137.1|	-	0.0038	16.8	0.0	0.0072	15.8	0.0	1.5	1	0	0	1	1	1	1	Carbamoyl-phosphate	synthase	L	chain,	ATP	binding	domain
SDH_sah	PF01972.16	gi|408404154|ref|YP_006862137.1|	-	0.11	11.5	0.0	5.3	6.0	0.0	2.1	2	0	0	2	2	2	0	Serine	dehydrogenase	proteinase
CoA_binding	PF02629.19	gi|408404155|ref|YP_006862138.1|	-	7.1e-22	77.9	1.6	1e-21	77.4	0.2	2.0	2	1	0	2	2	2	1	CoA	binding	domain
Ligase_CoA	PF00549.19	gi|408404155|ref|YP_006862138.1|	-	4.9e-10	39.4	0.0	8.2e-10	38.7	0.0	1.3	1	0	0	1	1	1	1	CoA-ligase
Succ_CoA_lig	PF13607.6	gi|408404155|ref|YP_006862138.1|	-	6.9e-05	22.7	0.0	0.00011	22.0	0.0	1.3	1	0	0	1	1	1	1	Succinyl-CoA	ligase	like	flavodoxin	domain
CoA_binding_2	PF13380.6	gi|408404155|ref|YP_006862138.1|	-	0.00044	20.7	0.0	0.001	19.5	0.0	1.6	1	0	0	1	1	1	1	CoA	binding	domain
Glu_synthase	PF01645.17	gi|408404155|ref|YP_006862138.1|	-	0.058	12.5	0.1	0.099	11.8	0.1	1.3	1	0	0	1	1	1	0	Conserved	region	in	glutamate	synthase
Methyltransf_31	PF13847.6	gi|408404157|ref|YP_006862140.1|	-	0.15	11.9	0.0	0.25	11.1	0.0	1.3	1	0	0	1	1	1	0	Methyltransferase	domain
Glycos_transf_1	PF00534.20	gi|408404158|ref|YP_006862141.1|	-	7.8e-18	64.6	0.0	1.4e-17	63.8	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.6	gi|408404158|ref|YP_006862141.1|	-	6.4e-09	36.3	0.0	1.2e-08	35.5	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Na_Ca_ex	PF01699.24	gi|408404159|ref|YP_006862142.1|	-	5.1e-27	94.7	38.2	8.5e-14	51.8	12.3	2.0	2	0	0	2	2	2	2	Sodium/calcium	exchanger	protein
DUF1240	PF06836.12	gi|408404159|ref|YP_006862142.1|	-	0.13	12.8	2.0	0.5	10.9	2.0	2.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1240)
Usp	PF00582.26	gi|408404160|ref|YP_006862143.1|	-	1e-37	129.8	0.1	1.1e-37	129.6	0.1	1.0	1	0	0	1	1	1	1	Universal	stress	protein	family
DUF3980	PF13140.6	gi|408404160|ref|YP_006862143.1|	-	0.16	12.4	0.0	0.26	11.8	0.0	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3980)
CTU2	PF10288.9	gi|408404161|ref|YP_006862144.1|	-	0.045	14.0	0.6	0.045	14.0	0.6	1.0	1	0	0	1	1	1	0	Cytoplasmic	tRNA	2-thiolation	protein	2
zf-Mss51	PF13824.6	gi|408404161|ref|YP_006862144.1|	-	0.058	13.5	0.2	0.086	12.9	0.2	1.5	1	1	0	1	1	1	0	Zinc-finger	of	mitochondrial	splicing	suppressor	51
HTH_45	PF14947.6	gi|408404162|ref|YP_006862145.1|	-	0.048	13.7	0.0	0.17	11.9	0.0	1.8	2	0	0	2	2	2	0	Winged	helix-turn-helix
UPF0147	PF03685.13	gi|408404163|ref|YP_006862146.1|	-	1.6e-27	95.3	2.1	2e-27	95.0	2.1	1.1	1	0	0	1	1	1	1	Uncharacterised	protein	family	(UPF0147)
Ribosomal_S20p	PF01649.18	gi|408404163|ref|YP_006862146.1|	-	0.0074	16.9	2.2	0.06	14.0	2.0	2.2	1	1	0	1	1	1	1	Ribosomal	protein	S20
Linker_histone	PF00538.19	gi|408404163|ref|YP_006862146.1|	-	0.024	15.0	0.5	0.071	13.5	0.1	2.0	2	1	0	2	2	2	0	linker	histone	H1	and	H5	family
DUF3107	PF11305.8	gi|408404163|ref|YP_006862146.1|	-	0.047	14.0	0.3	0.085	13.1	0.2	1.6	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF3107)
Suppressor_P21	PF11479.8	gi|408404163|ref|YP_006862146.1|	-	0.054	13.7	0.1	0.076	13.2	0.1	1.4	1	1	0	1	1	1	0	RNA	silencing	suppressor	P21	C-terminal	domain
Beta-Casp	PF10996.8	gi|408404164|ref|YP_006862147.1|	-	5.6e-21	74.9	0.0	1.1e-20	74.0	0.0	1.5	1	0	0	1	1	1	1	Beta-Casp	domain
KH_7	PF17214.3	gi|408404164|ref|YP_006862147.1|	-	3.9e-19	68.4	0.3	3.2e-18	65.4	0.1	2.6	2	0	0	2	2	2	1	KH	domain
Lactamase_B_6	PF16661.5	gi|408404164|ref|YP_006862147.1|	-	1.6e-15	57.1	0.0	2.7e-15	56.3	0.0	1.3	1	0	0	1	1	1	1	Metallo-beta-lactamase	superfamily	domain
RMMBL	PF07521.12	gi|408404164|ref|YP_006862147.1|	-	3e-15	55.9	0.0	9.9e-15	54.2	0.0	1.9	2	0	0	2	2	2	1	Zn-dependent	metallo-hydrolase	RNA	specificity	domain
Lactamase_B	PF00753.27	gi|408404164|ref|YP_006862147.1|	-	3.5e-10	40.2	0.0	2.4e-09	37.5	0.0	2.1	1	1	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Lactamase_B_2	PF12706.7	gi|408404164|ref|YP_006862147.1|	-	1.3e-07	31.3	0.0	1.8e-06	27.6	0.0	2.3	2	0	0	2	2	2	1	Beta-lactamase	superfamily	domain
HARE-HTH	PF05066.13	gi|408404164|ref|YP_006862147.1|	-	0.11	12.9	0.0	0.69	10.4	0.0	2.1	2	0	0	2	2	2	0	HB1,	ASXL,	restriction	endonuclease	HTH	domain
Peptidase_M50	PF02163.22	gi|408404165|ref|YP_006862148.1|	-	5.6e-27	94.6	0.2	1.4e-26	93.3	0.0	1.8	2	1	0	2	2	2	1	Peptidase	family	M50
PDZ_6	PF17820.1	gi|408404165|ref|YP_006862148.1|	-	0.057	13.3	0.2	0.092	12.6	0.2	1.3	1	0	0	1	1	1	0	PDZ	domain
PDZ_2	PF13180.6	gi|408404165|ref|YP_006862148.1|	-	0.12	12.8	0.0	0.25	11.7	0.0	1.6	1	0	0	1	1	1	0	PDZ	domain
FA_desaturase	PF00487.24	gi|408404165|ref|YP_006862148.1|	-	0.59	9.9	6.7	0.84	9.4	0.2	2.7	3	0	0	3	3	3	0	Fatty	acid	desaturase
TOBE	PF03459.17	gi|408404166|ref|YP_006862149.1|	-	0.13	12.6	0.0	1.8	8.9	0.0	2.1	2	0	0	2	2	2	0	TOBE	domain
zf-C2H2_3	PF13878.6	gi|408404167|ref|YP_006862150.1|	-	0.0035	17.1	0.1	0.005	16.6	0.1	1.3	1	0	0	1	1	1	1	zinc-finger	of	acetyl-transferase	ESCO
CpXC	PF14353.6	gi|408404167|ref|YP_006862150.1|	-	0.007	16.4	0.4	0.0074	16.3	0.4	1.2	1	0	0	1	1	1	1	CpXC	protein
OrfB_Zn_ribbon	PF07282.11	gi|408404167|ref|YP_006862150.1|	-	0.04	13.9	0.4	0.048	13.6	0.4	1.2	1	0	0	1	1	1	0	Putative	transposase	DNA-binding	domain
ABC_tran	PF00005.27	gi|408404168|ref|YP_006862151.1|	-	1.4e-28	100.1	0.0	2.1e-28	99.5	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|408404168|ref|YP_006862151.1|	-	5e-10	39.7	0.0	4e-07	30.1	0.0	2.2	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|408404168|ref|YP_006862151.1|	-	0.0015	18.0	0.0	0.12	11.8	0.0	2.1	2	0	0	2	2	2	1	RecF/RecN/SMC	N	terminal	domain
AAA_29	PF13555.6	gi|408404168|ref|YP_006862151.1|	-	0.0064	16.2	0.3	0.023	14.4	0.1	2.0	2	0	0	2	2	2	1	P-loop	containing	region	of	AAA	domain
TsaE	PF02367.17	gi|408404168|ref|YP_006862151.1|	-	0.0071	16.3	0.0	0.013	15.5	0.0	1.4	1	0	0	1	1	1	1	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
AAA_15	PF13175.6	gi|408404168|ref|YP_006862151.1|	-	0.013	15.2	0.0	4	7.1	0.0	2.1	2	0	0	2	2	2	0	AAA	ATPase	domain
AAA_22	PF13401.6	gi|408404168|ref|YP_006862151.1|	-	0.013	15.7	0.1	0.04	14.2	0.1	1.9	1	1	0	1	1	1	0	AAA	domain
AAA	PF00004.29	gi|408404168|ref|YP_006862151.1|	-	0.015	15.7	0.0	0.033	14.6	0.0	1.7	1	0	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_30	PF13604.6	gi|408404168|ref|YP_006862151.1|	-	0.024	14.4	0.1	0.048	13.4	0.1	1.8	1	1	0	1	1	1	0	AAA	domain
AAA_23	PF13476.6	gi|408404168|ref|YP_006862151.1|	-	0.029	14.9	0.5	0.2	12.1	0.0	2.0	2	0	0	2	2	2	0	AAA	domain
AAA_16	PF13191.6	gi|408404168|ref|YP_006862151.1|	-	0.049	14.0	0.0	0.079	13.3	0.0	1.4	1	0	0	1	1	1	0	AAA	ATPase	domain
SbcCD_C	PF13558.6	gi|408404168|ref|YP_006862151.1|	-	0.092	13.0	0.1	1	9.7	0.0	2.6	2	1	0	2	2	2	0	Putative	exonuclease	SbcCD,	C	subunit
NB-ARC	PF00931.22	gi|408404168|ref|YP_006862151.1|	-	0.13	11.4	0.6	1.7	7.8	0.6	2.2	1	1	0	1	1	1	0	NB-ARC	domain
ABC2_membrane	PF01061.24	gi|408404169|ref|YP_006862152.1|	-	1.3e-16	60.6	25.5	1.3e-16	60.6	25.5	1.6	1	1	1	2	2	2	1	ABC-2	type	transporter
ABC2_membrane_3	PF12698.7	gi|408404169|ref|YP_006862152.1|	-	3.8e-09	36.1	26.3	3.8e-09	36.1	26.3	1.5	1	1	0	1	1	1	1	ABC-2	family	transporter	protein
Pribosyltran	PF00156.27	gi|408404170|ref|YP_006862153.1|	-	0.00087	18.8	0.0	0.00087	18.8	0.0	1.1	1	0	0	1	1	1	1	Phosphoribosyl	transferase	domain
zf-Di19	PF05605.12	gi|408404171|ref|YP_006862154.1|	-	0.0021	18.3	9.5	0.23	11.8	0.4	2.6	2	0	0	2	2	2	2	Drought	induced	19	protein	(Di19),	zinc-binding
zf-C2H2_4	PF13894.6	gi|408404171|ref|YP_006862154.1|	-	0.004	17.9	16.3	0.18	12.7	0.4	3.4	3	0	0	3	3	3	2	C2H2-type	zinc	finger
zinc_ribbon_10	PF10058.9	gi|408404171|ref|YP_006862154.1|	-	0.98	9.2	6.2	8.4	6.2	0.4	2.5	2	0	0	2	2	2	0	Predicted	integral	membrane	zinc-ribbon	metal-binding	protein
zf-C2H2	PF00096.26	gi|408404171|ref|YP_006862154.1|	-	2	9.0	13.1	3.1	8.4	0.3	3.2	3	0	0	3	3	3	0	Zinc	finger,	C2H2	type
UvrB_inter	PF17757.1	gi|408404172|ref|YP_006862155.1|	-	0.054	13.7	0.0	0.066	13.4	0.0	1.2	1	0	0	1	1	1	0	UvrB	interaction	domain
AAA_16	PF13191.6	gi|408404174|ref|YP_006862157.1|	-	0.002	18.5	0.0	0.39	11.1	0.0	2.2	1	1	1	2	2	2	2	AAA	ATPase	domain
AAA_14	PF13173.6	gi|408404174|ref|YP_006862157.1|	-	0.01	15.9	0.1	0.016	15.2	0.1	1.2	1	0	0	1	1	1	0	AAA	domain
AAA_18	PF13238.6	gi|408404174|ref|YP_006862157.1|	-	0.068	13.7	0.0	0.11	13.0	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
CactinC_cactus	PF09732.9	gi|408404174|ref|YP_006862157.1|	-	0.079	12.9	0.0	0.14	12.1	0.0	1.5	1	0	0	1	1	1	0	Cactus-binding	C-terminus	of	cactin	protein
HemeBinding_Shp	PF11545.8	gi|408404178|ref|YP_006862161.1|	-	0.02	14.9	0.3	4.9	7.1	0.0	2.6	1	1	1	2	2	2	0	Cell	surface	heme-binding	protein	Shp
ATP-synt_J	PF04911.12	gi|408404179|ref|YP_006862162.1|	-	0.0042	16.6	0.8	0.0093	15.5	0.8	1.6	1	0	0	1	1	1	1	ATP	synthase	j	chain
PHO4	PF01384.20	gi|408404179|ref|YP_006862162.1|	-	1.9	7.5	9.1	0.33	9.9	2.3	1.9	1	1	1	2	2	2	0	Phosphate	transporter	family
TraY	PF05509.11	gi|408404183|ref|YP_006862166.1|	-	0.049	13.7	0.1	0.11	12.5	0.0	1.6	2	0	0	2	2	2	0	TraY	domain
CAT_RBD	PF03123.15	gi|408404183|ref|YP_006862166.1|	-	3.1	7.8	4.9	1.2	9.1	0.2	2.5	3	0	0	3	3	3	0	CAT	RNA	binding	domain
HTH_33	PF13592.6	gi|408404184|ref|YP_006862167.1|	-	0.00054	19.5	0.0	0.031	13.9	0.0	2.6	2	0	0	2	2	2	1	Winged	helix-turn	helix
Phage_integrase	PF00589.22	gi|408404184|ref|YP_006862167.1|	-	0.12	12.2	0.0	0.22	11.3	0.0	1.5	1	0	0	1	1	1	0	Phage	integrase	family
T4_baseplate	PF12322.8	gi|408404185|ref|YP_006862168.1|	-	0.013	15.0	0.2	0.015	14.8	0.2	1.1	1	0	0	1	1	1	0	T4	bacteriophage	base	plate	protein
zf-FPG_IleRS	PF06827.14	gi|408404185|ref|YP_006862168.1|	-	0.022	14.6	0.6	0.048	13.5	0.6	1.6	1	0	0	1	1	1	0	Zinc	finger	found	in	FPG	and	IleRS
zf-ribbon_3	PF13248.6	gi|408404185|ref|YP_006862168.1|	-	0.023	14.1	0.2	0.037	13.4	0.2	1.3	1	0	0	1	1	1	0	zinc-ribbon	domain
SR1P	PF13790.6	gi|408404185|ref|YP_006862168.1|	-	0.077	13.1	0.1	0.18	12.0	0.0	1.6	1	1	0	1	1	1	0	SR1	protein
zinc_ribbon_2	PF13240.6	gi|408404185|ref|YP_006862168.1|	-	0.095	12.4	0.0	0.17	11.6	0.0	1.4	1	0	0	1	1	1	0	zinc-ribbon	domain
DUF2845	PF11006.8	gi|408404185|ref|YP_006862168.1|	-	0.097	12.8	0.7	0.13	12.4	0.7	1.4	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF2845)
Zn-ribbon_8	PF09723.10	gi|408404185|ref|YP_006862168.1|	-	0.098	12.8	0.1	0.18	12.0	0.1	1.4	1	0	0	1	1	1	0	Zinc	ribbon	domain
zf-Mss51	PF13824.6	gi|408404185|ref|YP_006862168.1|	-	0.12	12.4	0.0	0.18	11.9	0.0	1.4	1	0	0	1	1	1	0	Zinc-finger	of	mitochondrial	splicing	suppressor	51
NSP10	PF09401.10	gi|408404186|ref|YP_006862169.1|	-	0.093	12.8	0.0	0.096	12.7	0.0	1.1	1	0	0	1	1	1	0	RNA	synthesis	protein	NSP10
YhfC	PF10086.9	gi|408404188|ref|YP_006862171.1|	-	0.013	14.8	0.1	0.014	14.7	0.1	1.1	1	0	0	1	1	1	0	YhfC	intramembrane	metalloprotease
Phage_holin_3_6	PF07332.11	gi|408404188|ref|YP_006862171.1|	-	0.027	14.5	0.2	0.029	14.4	0.2	1.1	1	0	0	1	1	1	0	Putative	Actinobacterial	Holin-X,	holin	superfamily	III
DUF3270	PF11674.8	gi|408404188|ref|YP_006862171.1|	-	0.13	12.4	2.8	0.19	11.9	2.8	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3270)
T2SSF	PF00482.23	gi|408404188|ref|YP_006862171.1|	-	0.19	11.7	1.5	0.26	11.2	1.5	1.2	1	0	0	1	1	1	0	Type	II	secretion	system	(T2SS),	protein	F
YqfD	PF06898.11	gi|408404188|ref|YP_006862171.1|	-	0.22	10.3	0.2	0.25	10.2	0.2	1.0	1	0	0	1	1	1	0	Putative	stage	IV	sporulation	protein	YqfD
DUF2207	PF09972.9	gi|408404188|ref|YP_006862171.1|	-	0.34	9.6	2.5	0.37	9.5	2.5	1.0	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2207)
PurS	PF02700.14	gi|408404189|ref|YP_006862172.1|	-	3.5e-20	72.0	0.9	3.9e-20	71.8	0.9	1.0	1	0	0	1	1	1	1	Phosphoribosylformylglycinamidine	(FGAM)	synthase
DUF2179	PF10035.9	gi|408404189|ref|YP_006862172.1|	-	0.057	13.2	0.6	0.083	12.7	0.1	1.5	2	0	0	2	2	2	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2179)
DUF5482	PF17579.2	gi|408404189|ref|YP_006862172.1|	-	0.061	13.2	0.1	0.065	13.1	0.1	1.1	1	0	0	1	1	1	0	Family	of	unknown	function	(DUF5482)
DUF1724	PF08350.10	gi|408404190|ref|YP_006862173.1|	-	0.0098	16.0	0.2	0.015	15.4	0.2	1.4	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1724)
PLDc_2	PF13091.6	gi|408404190|ref|YP_006862173.1|	-	0.12	12.3	0.4	0.93	9.4	0.4	2.0	1	1	0	1	1	1	0	PLD-like	domain
CarboxypepD_reg	PF13620.6	gi|408404192|ref|YP_006862175.1|	-	3e-06	27.4	0.5	5.6e-06	26.5	0.5	1.4	1	0	0	1	1	1	1	Carboxypeptidase	regulatory-like	domain
CBS	PF00571.28	gi|408404194|ref|YP_006862177.1|	-	5e-27	94.1	1.1	8.2e-15	55.0	0.5	2.2	2	0	0	2	2	2	2	CBS	domain
GATase_5	PF13507.6	gi|408404195|ref|YP_006862178.1|	-	3.7e-44	150.8	0.0	5.6e-44	150.2	0.0	1.2	1	0	0	1	1	1	1	CobB/CobQ-like	glutamine	amidotransferase	domain
DJ-1_PfpI	PF01965.24	gi|408404195|ref|YP_006862178.1|	-	1e-08	35.2	0.1	2.3e-08	34.0	0.0	1.6	2	0	0	2	2	2	1	DJ-1/PfpI	family
GATase_3	PF07685.14	gi|408404195|ref|YP_006862178.1|	-	1.5e-08	34.5	0.0	2.8e-08	33.6	0.0	1.5	1	0	0	1	1	1	1	CobB/CobQ-like	glutamine	amidotransferase	domain
GATase	PF00117.28	gi|408404195|ref|YP_006862178.1|	-	2e-07	31.0	0.0	4.9e-07	29.7	0.0	1.6	1	1	0	1	1	1	1	Glutamine	amidotransferase	class-I
Peptidase_C26	PF07722.13	gi|408404195|ref|YP_006862178.1|	-	0.0022	17.8	0.0	0.0041	16.9	0.0	1.5	1	0	0	1	1	1	1	Peptidase	C26
SNO	PF01174.19	gi|408404195|ref|YP_006862178.1|	-	0.0064	16.4	0.0	0.018	14.9	0.0	1.7	1	1	0	1	1	1	1	SNO	glutamine	amidotransferase	family
DUF3874	PF12990.7	gi|408404195|ref|YP_006862178.1|	-	0.097	13.0	0.0	0.22	11.9	0.0	1.5	1	0	0	1	1	1	0	Domain	of	unknonw	function	from	B.	Theta	Gene	description	(DUF3874)
DUF807	PF05660.11	gi|408404195|ref|YP_006862178.1|	-	0.098	12.6	0.0	0.16	11.9	0.0	1.3	1	0	0	1	1	1	0	Coxiella	burnetii	protein	of	unknown	function	(DUF807)
HSP33	PF01430.19	gi|408404195|ref|YP_006862178.1|	-	0.18	11.2	0.0	0.22	10.9	0.0	1.2	1	0	0	1	1	1	0	Hsp33	protein
AIRS_C	PF02769.22	gi|408404196|ref|YP_006862179.1|	-	9.2e-46	155.8	0.2	3.2e-23	82.6	0.1	2.2	2	0	0	2	2	2	2	AIR	synthase	related	protein,	C-terminal	domain
AIRS	PF00586.24	gi|408404196|ref|YP_006862179.1|	-	1.2e-39	134.8	0.7	4.6e-20	72.1	0.2	2.6	2	0	0	2	2	2	2	AIR	synthase	related	protein,	N-terminal	domain
FGAR-AT_linker	PF18072.1	gi|408404196|ref|YP_006862179.1|	-	8.8e-09	35.8	0.3	3.5e-08	33.9	0.3	2.1	1	0	0	1	1	1	1	Formylglycinamide	ribonucleotide	amidotransferase	linker	domain
GATase_7	PF13537.6	gi|408404197|ref|YP_006862180.1|	-	5.8e-13	48.8	0.0	9.6e-13	48.1	0.0	1.4	1	0	0	1	1	1	1	Glutamine	amidotransferase	domain
GATase_6	PF13522.6	gi|408404197|ref|YP_006862180.1|	-	2.5e-12	47.1	0.0	4.6e-12	46.3	0.0	1.4	1	0	0	1	1	1	1	Glutamine	amidotransferase	domain
Pribosyltran	PF00156.27	gi|408404197|ref|YP_006862180.1|	-	3.5e-09	36.4	0.0	6.3e-09	35.5	0.0	1.3	1	0	0	1	1	1	1	Phosphoribosyl	transferase	domain
GATase_4	PF13230.6	gi|408404197|ref|YP_006862180.1|	-	6.5e-07	28.5	0.0	2.1e-06	26.8	0.0	1.7	2	0	0	2	2	2	1	Glutamine	amidotransferases	class-II
GATase_2	PF00310.21	gi|408404197|ref|YP_006862180.1|	-	0.0017	17.1	0.0	0.06	12.1	0.0	2.4	3	0	0	3	3	3	1	Glutamine	amidotransferases	class-II
CoA_binding_2	PF13380.6	gi|408404200|ref|YP_006862183.1|	-	8e-43	145.6	0.3	9.1e-43	145.4	0.3	1.0	1	0	0	1	1	1	1	CoA	binding	domain
CoA_binding	PF02629.19	gi|408404200|ref|YP_006862183.1|	-	2.8e-09	37.5	0.1	4.7e-09	36.8	0.1	1.3	1	0	0	1	1	1	1	CoA	binding	domain
ZnuA	PF01297.17	gi|408404200|ref|YP_006862183.1|	-	0.024	14.1	0.0	0.055	12.9	0.0	1.7	1	1	0	1	1	1	0	Zinc-uptake	complex	component	A	periplasmic
Pyr_redox	PF00070.27	gi|408404200|ref|YP_006862183.1|	-	0.12	12.9	0.1	16	6.1	0.0	2.7	2	1	1	3	3	3	0	Pyridine	nucleotide-disulphide	oxidoreductase
DUF2387	PF09526.10	gi|408404202|ref|YP_006862185.1|	-	0.72	10.0	3.1	0.63	10.2	0.5	2.3	2	0	0	2	2	2	0	Probable	metal-binding	protein	(DUF2387)
Baculo_PEP_C	PF04513.12	gi|408404202|ref|YP_006862185.1|	-	6	6.9	7.8	2.8	8.0	4.8	2.2	2	1	0	2	2	2	0	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
PRTase_1	PF11202.8	gi|408404202|ref|YP_006862185.1|	-	6.5	5.9	8.1	0.53	9.5	2.8	1.8	2	0	0	2	2	2	0	Phosphoribosyl	transferase	(PRTase)
MMR_HSR1_C	PF08438.10	gi|408404203|ref|YP_006862186.1|	-	4.9e-34	117.3	0.1	8.9e-34	116.4	0.1	1.5	1	0	0	1	1	1	1	GTPase	of	unknown	function	C-terminal
MMR_HSR1	PF01926.23	gi|408404203|ref|YP_006862186.1|	-	5.2e-20	71.6	0.0	5.6e-19	68.3	0.0	2.5	3	0	0	3	3	3	1	50S	ribosome-binding	GTPase
TGS	PF02824.21	gi|408404203|ref|YP_006862186.1|	-	3.5e-10	39.8	0.0	6.6e-10	38.9	0.0	1.4	1	0	0	1	1	1	1	TGS	domain
FeoB_N	PF02421.18	gi|408404203|ref|YP_006862186.1|	-	7.3e-08	32.1	0.1	1e-05	25.1	0.1	3.1	4	0	0	4	4	4	1	Ferrous	iron	transport	protein	B
Dynamin_N	PF00350.23	gi|408404203|ref|YP_006862186.1|	-	0.00044	20.3	0.0	0.11	12.6	0.0	2.4	1	1	1	2	2	2	2	Dynamin	family
GTP_EFTU	PF00009.27	gi|408404203|ref|YP_006862186.1|	-	0.078	12.5	0.8	8.7	5.8	0.1	2.7	3	0	0	3	3	3	0	Elongation	factor	Tu	GTP	binding	domain
DNA_PPF	PF02916.15	gi|408404204|ref|YP_006862187.1|	-	0.089	13.2	0.0	0.098	13.1	0.0	1.1	1	0	0	1	1	1	0	DNA	polymerase	processivity	factor
HTH_45	PF14947.6	gi|408404205|ref|YP_006862188.1|	-	3.2e-14	52.6	0.9	3.5e-14	52.5	0.9	1.0	1	0	0	1	1	1	1	Winged	helix-turn-helix
HTH_27	PF13463.6	gi|408404205|ref|YP_006862188.1|	-	0.00036	21.0	0.3	0.00043	20.7	0.3	1.1	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
HTH_24	PF13412.6	gi|408404205|ref|YP_006862188.1|	-	0.0012	18.4	0.2	0.0018	17.8	0.2	1.3	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
SMC_ScpB	PF04079.16	gi|408404205|ref|YP_006862188.1|	-	0.005	16.5	0.1	0.0058	16.3	0.1	1.2	1	0	0	1	1	1	1	Segregation	and	condensation	complex	subunit	ScpB
RNA_pol_Rpc34	PF05158.12	gi|408404205|ref|YP_006862188.1|	-	0.0061	16.0	0.1	0.0061	16.0	0.1	1.1	1	0	0	1	1	1	1	RNA	polymerase	Rpc34	subunit
PadR	PF03551.14	gi|408404205|ref|YP_006862188.1|	-	0.019	15.0	0.4	0.023	14.7	0.4	1.2	1	0	0	1	1	1	0	Transcriptional	regulator	PadR-like	family
DUF4364	PF14277.6	gi|408404205|ref|YP_006862188.1|	-	0.02	14.7	0.1	0.021	14.6	0.1	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4364)
Rio2_N	PF09202.11	gi|408404205|ref|YP_006862188.1|	-	0.04	14.1	0.2	0.049	13.9	0.2	1.1	1	0	0	1	1	1	0	Rio2,	N-terminal
CARD	PF00619.21	gi|408404205|ref|YP_006862188.1|	-	0.067	13.2	0.1	0.091	12.8	0.1	1.2	1	0	0	1	1	1	0	Caspase	recruitment	domain
BPL_LplA_LipB	PF03099.19	gi|408404206|ref|YP_006862189.1|	-	3.2e-18	65.9	0.0	7.4e-18	64.7	0.0	1.6	1	0	0	1	1	1	1	Biotin/lipoate	A/B	protein	ligase	family
HTH_11	PF08279.12	gi|408404206|ref|YP_006862189.1|	-	2.6e-13	49.7	0.1	5.8e-13	48.6	0.1	1.6	1	0	0	1	1	1	1	HTH	domain
BPL_C	PF02237.17	gi|408404206|ref|YP_006862189.1|	-	3.1e-09	36.6	1.5	3.7e-09	36.4	0.4	1.8	2	0	0	2	2	2	1	Biotin	protein	ligase	C	terminal	domain
HTH_24	PF13412.6	gi|408404206|ref|YP_006862189.1|	-	1.4e-06	27.8	0.1	1.3e-05	24.7	0.0	2.3	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
BPL_LplA_LipB_2	PF16917.5	gi|408404206|ref|YP_006862189.1|	-	7.6e-05	22.3	0.0	0.00017	21.2	0.0	1.6	1	1	0	1	1	1	1	Biotin/lipoate	A/B	protein	ligase	family
Rrf2	PF02082.20	gi|408404206|ref|YP_006862189.1|	-	0.0052	17.1	0.0	0.015	15.7	0.0	1.8	1	0	0	1	1	1	1	Transcriptional	regulator
HTH_1	PF00126.27	gi|408404206|ref|YP_006862189.1|	-	0.027	14.4	0.0	0.06	13.3	0.0	1.5	1	0	0	1	1	1	0	Bacterial	regulatory	helix-turn-helix	protein,	lysR	family
HTH_10	PF04967.12	gi|408404206|ref|YP_006862189.1|	-	0.038	13.8	0.0	0.1	12.4	0.0	1.7	2	0	0	2	2	2	0	HTH	DNA	binding	domain
HTH_AsnC-type	PF13404.6	gi|408404206|ref|YP_006862189.1|	-	0.046	13.6	0.1	0.14	12.0	0.1	1.9	2	0	0	2	2	2	0	AsnC-type	helix-turn-helix	domain
HTH_36	PF13730.6	gi|408404206|ref|YP_006862189.1|	-	0.073	13.0	0.0	0.21	11.6	0.0	1.7	1	0	0	1	1	1	0	Helix-turn-helix	domain
DUF4147	PF13660.6	gi|408404207|ref|YP_006862190.1|	-	3.9e-79	265.4	2.3	5.4e-79	265.0	2.3	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4147)
MOFRL	PF05161.13	gi|408404207|ref|YP_006862190.1|	-	6.6e-34	116.4	0.5	1.4e-33	115.3	0.5	1.6	1	0	0	1	1	1	1	MOFRL	family
TF_Zn_Ribbon	PF08271.12	gi|408404208|ref|YP_006862191.1|	-	0.012	15.1	6.4	0.023	14.2	6.4	1.5	1	0	0	1	1	1	0	TFIIB	zinc-binding
CEBP_ZZ	PF16366.5	gi|408404208|ref|YP_006862191.1|	-	0.37	11.1	7.3	0.55	10.5	7.3	1.3	1	0	0	1	1	1	0	Cytoplasmic	polyadenylation	element-binding	protein	ZZ	domain
Osmo_MPGsynth	PF09488.10	gi|408404210|ref|YP_006862193.1|	-	3.1e-152	506.8	0.0	3.5e-152	506.6	0.0	1.0	1	0	0	1	1	1	1	Mannosyl-3-phosphoglycerate	synthase	(osmo_MPGsynth)
Glycos_transf_2	PF00535.26	gi|408404210|ref|YP_006862193.1|	-	0.03	14.2	0.1	1.2	9.0	0.1	2.3	1	1	0	1	1	1	0	Glycosyl	transferase	family	2
GDE_C	PF06202.14	gi|408404211|ref|YP_006862194.1|	-	8.3e-38	130.3	0.2	2e-37	129.0	0.2	1.6	2	0	0	2	2	2	1	Amylo-alpha-1,6-glucosidase
Bac_rhamnosid6H	PF17389.2	gi|408404211|ref|YP_006862194.1|	-	5.8e-08	32.4	0.1	9.4e-08	31.7	0.1	1.3	1	0	0	1	1	1	1	Bacterial	alpha-L-rhamnosidase	6	hairpin	glycosidase	domain
Glyco_hydro_100	PF12899.7	gi|408404211|ref|YP_006862194.1|	-	9.1e-08	31.2	0.1	0.0061	15.3	0.1	2.2	2	0	0	2	2	2	2	Alkaline	and	neutral	invertase
Trehalase	PF01204.18	gi|408404211|ref|YP_006862194.1|	-	2e-07	30.2	0.7	3.5e-07	29.4	0.1	1.5	2	0	0	2	2	2	1	Trehalase
DUF608	PF04685.13	gi|408404211|ref|YP_006862194.1|	-	3.7e-06	26.4	0.2	1.1e-05	24.8	0.2	1.6	1	1	0	1	1	1	1	Glycosyl-hydrolase	family	116,	catalytic	region
Glyco_hydro_63	PF03200.16	gi|408404211|ref|YP_006862194.1|	-	0.03	13.1	0.3	5.4	5.7	0.1	2.1	1	1	0	2	2	2	0	Glycosyl	hydrolase	family	63	C-terminal	domain
Glyco_hydro_36	PF17167.4	gi|408404211|ref|YP_006862194.1|	-	0.055	12.2	1.6	0.33	9.6	1.5	1.9	1	1	0	1	1	1	0	Glycosyl	hydrolase	36	superfamily,	catalytic	domain
DUF2203	PF09969.9	gi|408404212|ref|YP_006862195.1|	-	1.5e-36	125.8	0.2	1.7e-36	125.6	0.2	1.0	1	0	0	1	1	1	1	Uncharacterized	conserved	protein	(DUF2203)
TssO	PF17561.2	gi|408404212|ref|YP_006862195.1|	-	0.016	15.3	1.6	0.023	14.8	1.6	1.2	1	0	0	1	1	1	0	Type	VI	secretion	system,	TssO
Calici_MSP	PF05752.11	gi|408404212|ref|YP_006862195.1|	-	0.11	12.4	0.0	0.12	12.1	0.0	1.1	1	0	0	1	1	1	0	Calicivirus	minor	structural	protein
Peptidase_M57	PF12388.8	gi|408404212|ref|YP_006862195.1|	-	0.11	12.1	0.0	0.13	11.9	0.0	1.1	1	0	0	1	1	1	0	Dual-action	HEIGH	metallo-peptidase
Sigma70_r4_2	PF08281.12	gi|408404213|ref|YP_006862196.1|	-	0.00032	20.3	0.0	0.00052	19.6	0.0	1.3	1	0	0	1	1	1	1	Sigma-70,	region	4
RPA_C	PF08784.11	gi|408404213|ref|YP_006862196.1|	-	0.0021	18.7	0.0	0.003	18.2	0.0	1.2	1	0	0	1	1	1	1	Replication	protein	A	C	terminal
GerE	PF00196.19	gi|408404213|ref|YP_006862196.1|	-	0.0087	15.6	0.1	0.017	14.7	0.1	1.4	1	1	0	1	1	1	1	Bacterial	regulatory	proteins,	luxR	family
Rrf2	PF02082.20	gi|408404213|ref|YP_006862196.1|	-	0.011	16.1	0.0	0.012	15.9	0.0	1.1	1	0	0	1	1	1	0	Transcriptional	regulator
TrmB	PF01978.19	gi|408404213|ref|YP_006862196.1|	-	0.011	15.6	0.0	0.016	15.1	0.0	1.3	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
HTH_11	PF08279.12	gi|408404213|ref|YP_006862196.1|	-	0.017	15.1	0.0	0.025	14.5	0.0	1.4	1	0	0	1	1	1	0	HTH	domain
MOZ_SAS	PF01853.18	gi|408404213|ref|YP_006862196.1|	-	0.068	12.8	0.0	0.084	12.5	0.0	1.2	1	0	0	1	1	1	0	MOZ/SAS	family
HTH_24	PF13412.6	gi|408404213|ref|YP_006862196.1|	-	0.069	12.7	0.0	0.12	12.0	0.0	1.4	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
Terminase_5	PF06056.12	gi|408404213|ref|YP_006862196.1|	-	0.12	12.3	0.0	0.48	10.4	0.0	2.1	2	1	0	2	2	2	0	Putative	ATPase	subunit	of	terminase	(gpP-like)
HTH_37	PF13744.6	gi|408404213|ref|YP_006862196.1|	-	0.14	12.1	0.0	0.16	11.9	0.0	1.3	1	1	0	1	1	1	0	Helix-turn-helix	domain
HTH_20	PF12840.7	gi|408404213|ref|YP_006862196.1|	-	0.17	12.0	0.0	0.23	11.6	0.0	1.3	1	0	0	1	1	1	0	Helix-turn-helix	domain
Sigma70_r4	PF04545.16	gi|408404213|ref|YP_006862196.1|	-	0.19	11.3	0.0	0.26	10.8	0.0	1.2	1	0	0	1	1	1	0	Sigma-70,	region	4
UbiA	PF01040.18	gi|408404214|ref|YP_006862197.1|	-	3.9e-28	98.4	21.8	5.1e-28	98.0	21.8	1.1	1	0	0	1	1	1	1	UbiA	prenyltransferase	family
HTH_45	PF14947.6	gi|408404215|ref|YP_006862198.1|	-	6.5e-07	29.3	0.0	7.9e-07	29.0	0.0	1.1	1	0	0	1	1	1	1	Winged	helix-turn-helix
Rio2_N	PF09202.11	gi|408404215|ref|YP_006862198.1|	-	0.002	18.3	0.1	0.0022	18.2	0.1	1.2	1	0	0	1	1	1	1	Rio2,	N-terminal
DUF4364	PF14277.6	gi|408404215|ref|YP_006862198.1|	-	0.038	13.7	0.0	0.04	13.7	0.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4364)
Aldo_ket_red	PF00248.21	gi|408404217|ref|YP_006862200.1|	-	5.7e-23	81.5	2.5	1.8e-17	63.5	1.0	2.8	2	1	0	2	2	2	2	Aldo/keto	reductase	family
PRORP	PF16953.5	gi|408404217|ref|YP_006862200.1|	-	0.11	11.9	0.4	0.17	11.4	0.4	1.1	1	0	0	1	1	1	0	Protein-only	RNase	P
ABM	PF03992.16	gi|408404218|ref|YP_006862201.1|	-	6.2e-16	58.3	0.0	7.9e-16	58.0	0.0	1.2	1	0	0	1	1	1	1	Antibiotic	biosynthesis	monooxygenase
TPR_11	PF13414.6	gi|408404219|ref|YP_006862202.1|	-	7.4e-14	51.2	6.4	2.2e-06	27.3	0.0	3.3	2	1	1	3	3	3	2	TPR	repeat
TPR_1	PF00515.28	gi|408404219|ref|YP_006862202.1|	-	6.7e-13	47.9	14.1	3.6e-06	26.5	3.3	4.8	4	1	0	4	4	4	2	Tetratricopeptide	repeat
TPR_2	PF07719.17	gi|408404219|ref|YP_006862202.1|	-	1.2e-12	46.9	10.0	0.0006	19.7	1.8	4.4	4	0	0	4	4	4	3	Tetratricopeptide	repeat
TPR_16	PF13432.6	gi|408404219|ref|YP_006862202.1|	-	6.8e-11	42.6	4.2	1.2e-08	35.4	0.2	2.8	2	1	1	3	3	3	2	Tetratricopeptide	repeat
TPR_8	PF13181.6	gi|408404219|ref|YP_006862202.1|	-	1.4e-10	40.5	7.2	0.00022	21.2	0.6	4.8	4	1	0	4	4	4	2	Tetratricopeptide	repeat
TPR_9	PF13371.6	gi|408404219|ref|YP_006862202.1|	-	3.9e-09	36.5	0.1	3.9e-06	26.9	0.0	3.2	1	1	2	3	3	3	2	Tetratricopeptide	repeat
TPR_12	PF13424.6	gi|408404219|ref|YP_006862202.1|	-	2.6e-07	30.8	2.1	0.0015	18.7	0.9	2.6	1	1	2	3	3	3	3	Tetratricopeptide	repeat
TPR_17	PF13431.6	gi|408404219|ref|YP_006862202.1|	-	2.7e-07	30.5	6.5	7.5e-05	22.8	1.8	3.1	3	0	0	3	3	3	2	Tetratricopeptide	repeat
TPR_14	PF13428.6	gi|408404219|ref|YP_006862202.1|	-	3.2e-06	27.5	2.3	0.49	11.4	0.1	4.0	2	1	2	4	4	4	2	Tetratricopeptide	repeat
Peptidase_C39_2	PF13529.6	gi|408404219|ref|YP_006862202.1|	-	9.5e-05	23.0	0.1	0.00077	20.0	0.1	2.3	1	1	0	1	1	1	1	Peptidase_C39	like	family
TPR_19	PF14559.6	gi|408404219|ref|YP_006862202.1|	-	0.00012	22.5	6.1	0.03	14.8	0.1	3.1	1	1	2	3	3	3	2	Tetratricopeptide	repeat
TPR_7	PF13176.6	gi|408404219|ref|YP_006862202.1|	-	0.00021	21.1	2.4	2	8.7	0.0	4.2	4	0	0	4	4	4	1	Tetratricopeptide	repeat
Peptidase_C39	PF03412.15	gi|408404219|ref|YP_006862202.1|	-	0.029	14.2	0.0	0.048	13.5	0.0	1.4	1	0	0	1	1	1	0	Peptidase	C39	family
DUF2974	PF11187.8	gi|408404219|ref|YP_006862202.1|	-	0.056	13.0	0.1	1.1	8.8	0.1	2.2	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF2974)
Sel1	PF08238.12	gi|408404219|ref|YP_006862202.1|	-	0.2	12.4	4.8	7	7.5	3.0	2.6	2	0	0	2	2	2	0	Sel1	repeat
TPR_6	PF13174.6	gi|408404219|ref|YP_006862202.1|	-	0.23	12.2	6.0	1.6	9.6	0.0	3.6	4	0	0	4	4	3	0	Tetratricopeptide	repeat
TPR_10	PF13374.6	gi|408404219|ref|YP_006862202.1|	-	0.44	10.5	3.3	6.8	6.7	0.2	3.1	3	0	0	3	3	3	0	Tetratricopeptide	repeat
GATase	PF00117.28	gi|408404220|ref|YP_006862203.1|	-	4e-23	82.2	0.0	4.4e-23	82.0	0.0	1.0	1	0	0	1	1	1	1	Glutamine	amidotransferase	class-I
Peptidase_C26	PF07722.13	gi|408404220|ref|YP_006862203.1|	-	2.9e-09	37.0	0.1	2.8e-08	33.8	0.1	2.3	1	1	0	1	1	1	1	Peptidase	C26
SNO	PF01174.19	gi|408404220|ref|YP_006862203.1|	-	0.012	15.5	0.0	1.2	9.0	0.0	2.1	2	0	0	2	2	2	0	SNO	glutamine	amidotransferase	family
GATase_3	PF07685.14	gi|408404220|ref|YP_006862203.1|	-	0.015	14.9	0.1	0.022	14.4	0.1	1.5	1	1	0	1	1	1	0	CobB/CobQ-like	glutamine	amidotransferase	domain
DJ-1_PfpI	PF01965.24	gi|408404220|ref|YP_006862203.1|	-	0.019	14.8	0.0	0.025	14.4	0.0	1.2	1	0	0	1	1	1	0	DJ-1/PfpI	family
UPF0182	PF03699.13	gi|408404221|ref|YP_006862204.1|	-	1.3e-38	132.7	22.0	1.9e-37	128.8	22.0	2.5	1	1	0	1	1	1	1	Uncharacterised	protein	family	(UPF0182)
DUF4179	PF13786.6	gi|408404221|ref|YP_006862204.1|	-	0.2	12.2	1.9	2.4	8.7	0.0	3.4	2	1	0	2	2	2	0	Domain	of	unknown	function	(DUF4179)
DNA_primase_S	PF01896.19	gi|408404223|ref|YP_006862206.1|	-	3.4e-14	53.3	0.0	2.2e-13	50.7	0.0	2.2	2	1	0	2	2	2	1	DNA	primase	small	subunit
zinc_ribbon_10	PF10058.9	gi|408404223|ref|YP_006862206.1|	-	0.0049	16.6	1.2	0.021	14.5	1.2	2.1	1	0	0	1	1	1	1	Predicted	integral	membrane	zinc-ribbon	metal-binding	protein
Gmx_para_CXXCG	PF09535.10	gi|408404223|ref|YP_006862206.1|	-	0.34	10.1	2.6	0.48	9.6	1.9	1.6	1	1	1	2	2	2	0	Protein	of	unknown	function	(Gmx_para_CXXCG)
Zn-ribbon_8	PF09723.10	gi|408404223|ref|YP_006862206.1|	-	0.79	9.9	7.1	0.15	12.2	3.4	1.8	1	1	0	1	1	1	0	Zinc	ribbon	domain
OrfB_Zn_ribbon	PF07282.11	gi|408404223|ref|YP_006862206.1|	-	1.1	9.2	5.0	0.64	10.0	2.5	1.9	1	1	0	1	1	1	0	Putative	transposase	DNA-binding	domain
zf-ribbon_3	PF13248.6	gi|408404223|ref|YP_006862206.1|	-	9.5	5.8	13.3	3.3	7.2	4.2	2.9	3	0	0	3	3	3	0	zinc-ribbon	domain
DNA_primase_lrg	PF04104.14	gi|408404224|ref|YP_006862207.1|	-	5.8e-29	101.3	0.3	5.8e-29	101.3	0.3	2.0	2	0	0	2	2	2	1	Eukaryotic	and	archaeal	DNA	primase,	large	subunit
AP_endonuc_2	PF01261.24	gi|408404225|ref|YP_006862208.1|	-	2.1e-30	105.7	0.0	2.5e-30	105.5	0.0	1.1	1	0	0	1	1	1	1	Xylose	isomerase-like	TIM	barrel
PRMT5_TIM	PF17285.2	gi|408404225|ref|YP_006862208.1|	-	0.022	14.0	0.0	0.03	13.5	0.0	1.1	1	0	0	1	1	1	0	PRMT5	TIM	barrel	domain
DUF5065	PF16723.5	gi|408404226|ref|YP_006862209.1|	-	0.068	13.2	0.0	0.074	13.1	0.0	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF5065)
Actin_micro	PF17003.5	gi|408404227|ref|YP_006862210.1|	-	0.087	12.0	0.1	0.091	11.9	0.1	1.0	1	0	0	1	1	1	0	Putative	actin-like	family
DeoC	PF01791.9	gi|408404228|ref|YP_006862211.1|	-	1.7e-52	178.4	0.0	1.9e-52	178.2	0.0	1.0	1	0	0	1	1	1	1	DeoC/LacD	family	aldolase
OMPdecase	PF00215.24	gi|408404228|ref|YP_006862211.1|	-	0.0098	15.5	0.1	0.014	15.0	0.1	1.2	1	0	0	1	1	1	1	Orotidine	5'-phosphate	decarboxylase	/	HUMPS	family
PEP_mutase	PF13714.6	gi|408404228|ref|YP_006862211.1|	-	0.02	14.4	0.3	0.12	11.8	0.3	2.0	1	1	0	1	1	1	0	Phosphoenolpyruvate	phosphomutase
DHQS	PF01959.16	gi|408404229|ref|YP_006862212.1|	-	8.4e-107	357.1	0.9	9.8e-107	356.9	0.9	1.0	1	0	0	1	1	1	1	3-dehydroquinate	synthase	II
Helicase_RecD	PF05127.14	gi|408404229|ref|YP_006862212.1|	-	0.093	12.6	0.0	0.17	11.7	0.0	1.3	1	0	0	1	1	1	0	Helicase
Toprim	PF01751.22	gi|408404229|ref|YP_006862212.1|	-	0.11	12.7	0.2	0.28	11.4	0.2	1.6	1	1	0	1	1	1	0	Toprim	domain
N6_N4_Mtase	PF01555.18	gi|408404230|ref|YP_006862213.1|	-	7.4e-35	120.7	0.0	9e-35	120.4	0.0	1.1	1	0	0	1	1	1	1	DNA	methylase
Methyltransf_11	PF08241.12	gi|408404230|ref|YP_006862213.1|	-	0.00022	21.8	0.0	0.055	14.1	0.0	2.4	2	0	0	2	2	2	2	Methyltransferase	domain
Methyltransf_31	PF13847.6	gi|408404230|ref|YP_006862213.1|	-	0.00025	20.9	0.0	0.0069	16.2	0.0	2.1	2	0	0	2	2	2	1	Methyltransferase	domain
Methyltransf_25	PF13649.6	gi|408404230|ref|YP_006862213.1|	-	0.0035	18.0	0.0	0.011	16.4	0.0	1.8	2	0	0	2	2	2	1	Methyltransferase	domain
DUF2854	PF11016.8	gi|408404234|ref|YP_006862217.1|	-	0.22	11.4	0.0	0.28	11.1	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2854)
DHquinase_I	PF01487.15	gi|408404235|ref|YP_006862218.1|	-	3.1e-51	174.8	0.0	3.5e-51	174.7	0.0	1.0	1	0	0	1	1	1	1	Type	I	3-dehydroquinase
HyaE	PF07449.11	gi|408404235|ref|YP_006862218.1|	-	0.029	14.3	0.0	0.044	13.7	0.0	1.2	1	0	0	1	1	1	0	Hydrogenase-1	expression	protein	HyaE
Shikimate_dh_N	PF08501.11	gi|408404236|ref|YP_006862219.1|	-	5.3e-30	103.5	0.1	1e-29	102.6	0.1	1.5	1	0	0	1	1	1	1	Shikimate	dehydrogenase	substrate	binding	domain
SDH_C	PF18317.1	gi|408404236|ref|YP_006862219.1|	-	3.2e-14	52.4	0.7	6.8e-14	51.3	0.1	1.8	2	0	0	2	2	2	1	Shikimate	5'-dehydrogenase	C-terminal	domain
Shikimate_DH	PF01488.20	gi|408404236|ref|YP_006862219.1|	-	8.6e-11	42.1	0.1	1.5e-10	41.2	0.1	1.4	1	0	0	1	1	1	1	Shikimate	/	quinate	5-dehydrogenase
Sacchrp_dh_NADP	PF03435.18	gi|408404236|ref|YP_006862219.1|	-	1.1e-05	25.7	0.3	2.3e-05	24.7	0.3	1.6	1	0	0	1	1	1	1	Saccharopine	dehydrogenase	NADP	binding	domain
OCD_Mu_crystall	PF02423.15	gi|408404236|ref|YP_006862219.1|	-	0.00017	20.6	0.1	0.00024	20.2	0.1	1.2	1	0	0	1	1	1	1	Ornithine	cyclodeaminase/mu-crystallin	family
GARS_N	PF02844.15	gi|408404236|ref|YP_006862219.1|	-	0.0056	17.4	0.2	0.01	16.6	0.2	1.7	1	1	0	1	1	1	1	Phosphoribosylglycinamide	synthetase,	N	domain
AlaDh_PNT_C	PF01262.21	gi|408404236|ref|YP_006862219.1|	-	0.0063	15.8	0.5	0.012	14.9	0.5	1.3	1	0	0	1	1	1	1	Alanine	dehydrogenase/PNT,	C-terminal	domain
GHMP_kinases_N	PF00288.26	gi|408404237|ref|YP_006862220.1|	-	7.5e-11	42.1	0.5	7.5e-11	42.1	0.5	2.3	3	0	0	3	3	3	1	GHMP	kinases	N	terminal	domain
GHMP_kinases_C	PF08544.13	gi|408404237|ref|YP_006862220.1|	-	2.9e-05	24.3	0.2	0.00011	22.5	0.1	2.0	2	0	0	2	2	2	1	GHMP	kinases	C	terminal
EPSP_synthase	PF00275.20	gi|408404238|ref|YP_006862221.1|	-	3e-109	365.5	2.3	3.7e-109	365.2	2.3	1.0	1	0	0	1	1	1	1	EPSP	synthase	(3-phosphoshikimate	1-carboxyvinyltransferase)
YscJ_FliF	PF01514.17	gi|408404238|ref|YP_006862221.1|	-	0.053	13.2	0.0	0.73	9.5	0.0	2.4	2	0	0	2	2	2	0	Secretory	protein	of	YscJ/FliF	family
Chorismate_synt	PF01264.21	gi|408404239|ref|YP_006862222.1|	-	1.7e-133	444.4	0.0	1.9e-133	444.2	0.0	1.0	1	0	0	1	1	1	1	Chorismate	synthase
Aminotran_1_2	PF00155.21	gi|408404240|ref|YP_006862223.1|	-	1.4e-54	185.7	0.0	1.8e-54	185.3	0.0	1.1	1	0	0	1	1	1	1	Aminotransferase	class	I	and	II
Cys_Met_Meta_PP	PF01053.20	gi|408404240|ref|YP_006862223.1|	-	6.4e-10	38.1	0.0	1.1e-09	37.4	0.0	1.3	1	0	0	1	1	1	1	Cys/Met	metabolism	PLP-dependent	enzyme
Aminotran_5	PF00266.19	gi|408404240|ref|YP_006862223.1|	-	3.2e-09	36.2	0.0	5.5e-09	35.5	0.0	1.3	1	0	0	1	1	1	1	Aminotransferase	class-V
CM_2	PF01817.21	gi|408404240|ref|YP_006862223.1|	-	2.1e-05	24.8	2.8	4.7e-05	23.7	2.8	1.6	1	0	0	1	1	1	1	Chorismate	mutase	type	II
Beta_elim_lyase	PF01212.21	gi|408404240|ref|YP_006862223.1|	-	0.00019	20.8	0.0	0.00033	20.0	0.0	1.3	1	0	0	1	1	1	1	Beta-eliminating	lyase
DegT_DnrJ_EryC1	PF01041.17	gi|408404240|ref|YP_006862223.1|	-	0.0019	17.6	0.8	0.0068	15.8	0.0	1.9	2	0	0	2	2	2	1	DegT/DnrJ/EryC1/StrS	aminotransferase	family
PDH	PF02153.17	gi|408404241|ref|YP_006862224.1|	-	5.6e-23	81.3	0.2	6.5e-23	81.0	0.2	1.1	1	0	0	1	1	1	1	Prephenate	dehydrogenase
3HCDH_N	PF02737.18	gi|408404241|ref|YP_006862224.1|	-	1.3e-06	28.4	0.7	0.00011	22.2	0.1	3.4	2	1	0	2	2	2	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
NAD_binding_2	PF03446.15	gi|408404241|ref|YP_006862224.1|	-	3.4e-06	27.3	0.3	2.2e-05	24.7	0.0	2.1	2	0	0	2	2	2	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
F420_oxidored	PF03807.17	gi|408404241|ref|YP_006862224.1|	-	1.4e-05	25.6	0.2	4.3e-05	24.0	0.0	1.9	2	0	0	2	2	2	1	NADP	oxidoreductase	coenzyme	F420-dependent
NAD_Gly3P_dh_N	PF01210.23	gi|408404241|ref|YP_006862224.1|	-	0.0014	18.7	2.8	0.011	15.7	0.6	2.8	2	2	0	2	2	2	1	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
Rossmann-like	PF10727.9	gi|408404241|ref|YP_006862224.1|	-	0.0018	18.1	0.1	0.0042	16.9	0.1	1.6	1	0	0	1	1	1	1	Rossmann-like	domain
CoA_binding_2	PF13380.6	gi|408404241|ref|YP_006862224.1|	-	0.023	15.2	0.1	0.061	13.8	0.0	1.8	2	0	0	2	2	2	0	CoA	binding	domain
RecG_N	PF17190.4	gi|408404241|ref|YP_006862224.1|	-	0.035	14.8	0.5	0.13	13.0	0.3	2.0	1	1	1	2	2	2	0	RecG	N-terminal	helical	domain
Ldh_1_N	PF00056.23	gi|408404241|ref|YP_006862224.1|	-	0.05	13.7	0.1	0.7	10.0	0.1	2.5	1	1	0	1	1	1	0	lactate/malate	dehydrogenase,	NAD	binding	domain
Prok-RING_1	PF14446.6	gi|408404242|ref|YP_006862225.1|	-	0.043	13.7	3.1	0.054	13.4	3.1	1.2	1	0	0	1	1	1	0	Prokaryotic	RING	finger	family	1
C1_1	PF00130.22	gi|408404242|ref|YP_006862225.1|	-	0.065	13.1	3.5	0.1	12.5	3.5	1.4	1	0	0	1	1	1	0	Phorbol	esters/diacylglycerol	binding	domain	(C1	domain)
Fer2_2	PF01799.20	gi|408404242|ref|YP_006862225.1|	-	0.28	11.2	2.9	5	7.2	0.1	2.1	1	1	1	2	2	2	0	[2Fe-2S]	binding	domain
PyrI_C	PF02748.15	gi|408404242|ref|YP_006862225.1|	-	0.36	10.8	4.6	8.8	6.3	0.6	2.8	1	1	2	3	3	3	0	Aspartate	carbamoyltransferase	regulatory	chain,	metal	binding	domain
zf-H2C2_2	PF13465.6	gi|408404242|ref|YP_006862225.1|	-	3.8	8.1	7.2	11	6.6	0.4	3.0	3	0	0	3	3	3	0	Zinc-finger	double	domain
DUF4157	PF13699.6	gi|408404244|ref|YP_006862227.1|	-	5.2e-27	93.9	1.6	6.7e-27	93.5	0.2	1.8	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF4157)
Thioredoxin_15	PF18403.1	gi|408404244|ref|YP_006862227.1|	-	0.08	12.9	0.0	0.1	12.5	0.0	1.2	1	0	0	1	1	1	0	Thioredoxin-like	domain
AsnC_trans_reg	PF01037.21	gi|408404246|ref|YP_006862229.1|	-	4.7e-09	36.1	0.0	5.7e-09	35.8	0.0	1.1	1	0	0	1	1	1	1	Lrp/AsnC	ligand	binding	domain
NapD	PF03927.13	gi|408404246|ref|YP_006862229.1|	-	0.0073	16.3	0.1	0.014	15.4	0.1	1.5	1	1	0	1	1	1	1	NapD	protein
ACT_4	PF13291.6	gi|408404246|ref|YP_006862229.1|	-	0.032	14.8	0.2	0.88	10.2	0.1	2.0	1	1	1	2	2	2	0	ACT	domain
ATG16	PF08614.11	gi|408404250|ref|YP_006862233.1|	-	0.00068	19.9	14.3	0.00093	19.5	14.3	1.2	1	0	0	1	1	1	1	Autophagy	protein	16	(ATG16)
APG6_N	PF17675.1	gi|408404250|ref|YP_006862233.1|	-	0.00072	20.1	19.1	0.018	15.6	13.8	2.4	1	1	1	2	2	2	1	Apg6	coiled-coil	region
HALZ	PF02183.18	gi|408404250|ref|YP_006862233.1|	-	0.00073	19.7	19.8	0.046	13.9	1.7	4.3	3	3	1	4	4	4	1	Homeobox	associated	leucine	zipper
TMF_TATA_bd	PF12325.8	gi|408404250|ref|YP_006862233.1|	-	0.00078	19.6	14.2	0.027	14.7	0.4	2.2	1	1	1	2	2	2	2	TATA	element	modulatory	factor	1	TATA	binding
YabA	PF06156.13	gi|408404250|ref|YP_006862233.1|	-	0.0011	19.6	10.5	0.011	16.4	2.2	2.8	1	1	2	3	3	3	2	Initiation	control	protein	YabA
DUF4201	PF13870.6	gi|408404250|ref|YP_006862233.1|	-	0.0013	18.5	10.7	0.092	12.5	0.6	2.8	1	1	1	2	2	2	1	Domain	of	unknown	function	(DUF4201)
HAP1_N	PF04849.13	gi|408404250|ref|YP_006862233.1|	-	0.0026	17.0	10.2	0.13	11.5	0.4	2.1	1	1	1	2	2	2	2	HAP1	N-terminal	conserved	region
CENP-H	PF05837.12	gi|408404250|ref|YP_006862233.1|	-	0.0034	17.8	15.2	0.19	12.2	6.5	2.4	1	1	1	2	2	2	2	Centromere	protein	H	(CENP-H)
DUF4407	PF14362.6	gi|408404250|ref|YP_006862233.1|	-	0.0074	15.7	12.0	0.0095	15.3	12.0	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4407)
ADIP	PF11559.8	gi|408404250|ref|YP_006862233.1|	-	0.019	15.1	16.4	0.046	13.8	2.2	2.2	1	1	1	2	2	2	0	Afadin-	and	alpha	-actinin-Binding
DivIC	PF04977.15	gi|408404250|ref|YP_006862233.1|	-	0.029	14.1	22.2	0.4	10.5	0.7	4.0	1	1	2	3	3	3	0	Septum	formation	initiator
LYTB	PF02401.18	gi|408404250|ref|YP_006862233.1|	-	0.043	13.1	0.1	0.048	12.9	0.1	1.1	1	0	0	1	1	1	0	LytB	protein
DUF848	PF05852.11	gi|408404250|ref|YP_006862233.1|	-	0.044	13.9	8.4	0.27	11.3	5.1	2.1	1	1	1	2	2	2	0	Gammaherpesvirus	protein	of	unknown	function	(DUF848)
JIP_LZII	PF16471.5	gi|408404250|ref|YP_006862233.1|	-	0.049	13.8	7.3	0.091	12.9	3.1	2.8	2	1	1	3	3	3	0	JNK-interacting	protein	leucine	zipper	II
TolA_bind_tri	PF16331.5	gi|408404250|ref|YP_006862233.1|	-	0.05	13.7	9.0	1.2	9.2	3.4	2.8	1	1	2	3	3	3	0	TolA	binding	protein	trimerisation
Rootletin	PF15035.6	gi|408404250|ref|YP_006862233.1|	-	0.063	13.3	11.0	0.11	12.5	11.0	1.4	1	0	0	1	1	1	0	Ciliary	rootlet	component,	centrosome	cohesion
DUF501	PF04417.12	gi|408404250|ref|YP_006862233.1|	-	0.067	13.0	3.5	3.4	7.5	0.6	2.2	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF501)
ZapB	PF06005.12	gi|408404250|ref|YP_006862233.1|	-	0.073	13.5	18.7	3.3	8.2	8.7	3.3	1	1	2	3	3	3	0	Cell	division	protein	ZapB
Tho2	PF11262.8	gi|408404250|ref|YP_006862233.1|	-	0.085	12.1	3.7	0.088	12.0	3.0	1.3	1	1	0	1	1	1	0	Transcription	factor/nuclear	export	subunit	protein	2
GAS	PF13851.6	gi|408404250|ref|YP_006862233.1|	-	0.096	12.0	15.1	0.92	8.8	14.6	2.4	1	1	1	2	2	2	0	Growth-arrest	specific	micro-tubule	binding
Csm1_N	PF18504.1	gi|408404250|ref|YP_006862233.1|	-	0.1	12.9	12.7	0.13	12.6	0.0	4.1	1	1	2	3	3	3	0	Csm1	N-terminal	domain
Mod_r	PF07200.13	gi|408404250|ref|YP_006862233.1|	-	0.15	12.1	13.9	1.2	9.3	1.0	2.2	1	1	1	2	2	2	0	Modifier	of	rudimentary	(Mod(r))	protein
BRE1	PF08647.11	gi|408404250|ref|YP_006862233.1|	-	0.18	11.9	13.6	2.4	8.3	4.4	2.7	1	1	2	3	3	3	0	BRE1	E3	ubiquitin	ligase
Atg14	PF10186.9	gi|408404250|ref|YP_006862233.1|	-	0.21	10.6	7.4	0.24	10.4	7.4	1.2	1	0	0	1	1	1	0	Vacuolar	sorting	38	and	autophagy-related	subunit	14
YlqD	PF11068.8	gi|408404250|ref|YP_006862233.1|	-	0.22	11.9	10.6	2.6	8.4	8.1	2.2	1	1	1	2	2	2	0	YlqD	protein
DUF4795	PF16043.5	gi|408404250|ref|YP_006862233.1|	-	0.27	10.8	8.6	0.85	9.2	8.6	1.8	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4795)
Cep57_CLD_2	PF14197.6	gi|408404250|ref|YP_006862233.1|	-	0.32	11.1	13.8	2.1	8.5	6.1	3.0	2	1	0	2	2	2	0	Centrosome	localisation	domain	of	PPC89
KASH_CCD	PF14662.6	gi|408404250|ref|YP_006862233.1|	-	0.32	10.8	14.8	0.99	9.2	0.7	2.5	1	1	0	2	2	2	0	Coiled-coil	region	of	CCDC155	or	KASH
TPR_MLP1_2	PF07926.12	gi|408404250|ref|YP_006862233.1|	-	0.35	10.9	20.1	3.3	7.8	15.2	2.8	1	1	1	2	2	2	0	TPR/MLP1/MLP2-like	protein
Mto2_bdg	PF12808.7	gi|408404250|ref|YP_006862233.1|	-	0.52	10.7	17.1	5.3	7.4	3.6	4.2	2	2	1	3	3	3	0	Micro-tubular	organiser	Mto1	C-term	Mto2-binding	region
bZIP_1	PF00170.21	gi|408404250|ref|YP_006862233.1|	-	0.67	10.1	14.1	32	4.7	9.1	4.1	1	1	2	3	3	3	0	bZIP	transcription	factor
TMF_DNA_bd	PF12329.8	gi|408404250|ref|YP_006862233.1|	-	0.77	9.8	18.9	0.4	10.7	6.8	3.0	1	1	2	3	3	3	0	TATA	element	modulatory	factor	1	DNA	binding
Cnn_1N	PF07989.11	gi|408404250|ref|YP_006862233.1|	-	0.83	9.9	12.9	3.6	7.8	2.1	3.4	2	1	1	3	3	3	0	Centrosomin	N-terminal	motif	1
DUF3450	PF11932.8	gi|408404250|ref|YP_006862233.1|	-	1.2	8.4	16.0	2	7.6	1.3	2.2	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF3450)
Exonuc_VII_L	PF02601.15	gi|408404250|ref|YP_006862233.1|	-	1.2	8.7	9.9	1.5	8.3	9.9	1.1	1	0	0	1	1	1	0	Exonuclease	VII,	large	subunit
PRKG1_interact	PF15898.5	gi|408404250|ref|YP_006862233.1|	-	1.8	9.5	14.5	14	6.6	9.3	2.7	1	1	1	2	2	2	0	cGMP-dependent	protein	kinase	interacting	domain
TMPIT	PF07851.13	gi|408404250|ref|YP_006862233.1|	-	2.1	7.5	4.5	3.4	6.8	4.5	1.5	1	0	0	1	1	1	0	TMPIT-like	protein
Ax_dynein_light	PF10211.9	gi|408404250|ref|YP_006862233.1|	-	2.4	8.1	11.9	0.48	10.3	5.9	2.0	1	1	1	2	2	2	0	Axonemal	dynein	light	chain
FOXP-CC	PF16159.5	gi|408404250|ref|YP_006862233.1|	-	2.4	8.8	4.2	67	4.2	0.0	3.1	1	1	2	3	3	3	0	FOXP	coiled-coil	domain
SlyX	PF04102.12	gi|408404250|ref|YP_006862233.1|	-	3.1	8.5	13.0	5.8	7.6	0.7	4.0	1	1	3	4	4	4	0	SlyX
FapA	PF03961.13	gi|408404250|ref|YP_006862233.1|	-	3.5	6.1	8.8	5.9	5.4	8.8	1.5	1	1	0	1	1	1	0	Flagellar	Assembly	Protein	A
bZIP_2	PF07716.15	gi|408404250|ref|YP_006862233.1|	-	4	7.6	18.7	21	5.3	6.5	4.5	2	2	1	4	4	4	0	Basic	region	leucine	zipper
Swi5	PF07061.11	gi|408404250|ref|YP_006862233.1|	-	4.3	7.5	12.5	0.89	9.7	3.1	2.9	1	1	1	3	3	3	0	Swi5
Baculo_PEP_C	PF04513.12	gi|408404250|ref|YP_006862233.1|	-	4.5	7.3	8.6	5.7	7.0	7.5	1.6	1	1	1	2	2	2	0	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
HAUS6_N	PF14661.6	gi|408404250|ref|YP_006862233.1|	-	4.8	6.7	9.9	1.2	8.7	5.5	1.9	1	1	1	2	2	2	0	HAUS	augmin-like	complex	subunit	6	N-terminus
UPF0242	PF06785.11	gi|408404250|ref|YP_006862233.1|	-	4.8	7.3	12.7	2	8.5	5.5	2.2	1	1	1	2	2	2	0	Uncharacterised	protein	family	(UPF0242)	N-terminus
Fib_alpha	PF08702.10	gi|408404250|ref|YP_006862233.1|	-	5.2	7.2	9.2	13	5.9	5.7	2.1	1	1	1	2	2	2	0	Fibrinogen	alpha/beta	chain	family
DUF1192	PF06698.11	gi|408404250|ref|YP_006862233.1|	-	5.3	7.2	13.1	2	8.5	0.1	4.0	3	2	2	5	5	4	0	Protein	of	unknown	function	(DUF1192)
DUF2570	PF10828.8	gi|408404250|ref|YP_006862233.1|	-	6.9	6.5	10.0	4.3	7.2	6.8	2.2	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF2570)
Polyketide_cyc2	PF10604.9	gi|408404252|ref|YP_006862235.1|	-	1.5e-15	57.7	0.0	1.7e-15	57.6	0.0	1.0	1	0	0	1	1	1	1	Polyketide	cyclase	/	dehydrase	and	lipid	transport
AHSA1	PF08327.11	gi|408404252|ref|YP_006862235.1|	-	2.9e-11	43.7	0.1	3.4e-11	43.5	0.1	1.0	1	0	0	1	1	1	1	Activator	of	Hsp90	ATPase	homolog	1-like	protein
Polyketide_cyc	PF03364.20	gi|408404252|ref|YP_006862235.1|	-	2.3e-06	27.9	0.0	2.8e-06	27.6	0.0	1.4	1	1	0	1	1	1	1	Polyketide	cyclase	/	dehydrase	and	lipid	transport
EH_Signature	PF15611.6	gi|408404252|ref|YP_006862235.1|	-	0.094	12.1	0.0	0.094	12.1	0.0	1.1	1	0	0	1	1	1	0	EH_Signature	domain
DnaJ	PF00226.31	gi|408404253|ref|YP_006862236.1|	-	2.9e-27	94.6	4.8	4.9e-27	93.9	1.6	2.0	2	0	0	2	2	2	1	DnaJ	domain
DUF493	PF04359.14	gi|408404253|ref|YP_006862236.1|	-	0.0025	18.3	0.1	0.0039	17.8	0.1	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF493)
Phage_Gp23	PF10669.9	gi|408404253|ref|YP_006862236.1|	-	0.076	13.4	4.2	0.55	10.6	0.7	2.2	2	0	0	2	2	2	0	Protein	gp23	(Bacteriophage	A118)
ATP-synt_F	PF01990.17	gi|408404254|ref|YP_006862237.1|	-	7e-16	58.3	0.0	7.3e-16	58.3	0.0	1.0	1	0	0	1	1	1	1	ATP	synthase	(F/14-kDa)	subunit
Aldolase_II	PF00596.21	gi|408404255|ref|YP_006862238.1|	-	1.1e-40	139.6	0.0	1.2e-40	139.4	0.0	1.0	1	0	0	1	1	1	1	Class	II	Aldolase	and	Adducin	N-terminal	domain
GSDH	PF07995.11	gi|408404256|ref|YP_006862239.1|	-	3.4e-46	158.1	0.4	4e-46	157.8	0.4	1.1	1	0	0	1	1	1	1	Glucose	/	Sorbosone	dehydrogenase
Response_reg	PF00072.24	gi|408404257|ref|YP_006862240.1|	-	0.0002	21.5	0.1	0.00026	21.1	0.1	1.1	1	0	0	1	1	1	1	Response	regulator	receiver	domain
PP_kinase_C	PF13090.6	gi|408404257|ref|YP_006862240.1|	-	0.08	12.4	0.0	0.12	11.9	0.0	1.2	1	0	0	1	1	1	0	Polyphosphate	kinase	C-terminal	domain	2
DUF5356	PF17309.2	gi|408404257|ref|YP_006862240.1|	-	0.084	12.8	0.1	0.11	12.5	0.1	1.1	1	0	0	1	1	1	0	Family	of	unknown	function	(DUF5356)
PhnA	PF03831.14	gi|408404258|ref|YP_006862241.1|	-	0.064	13.1	0.1	0.074	12.9	0.1	1.2	1	1	0	1	1	1	0	PhnA	domain
CDP-OH_P_transf	PF01066.21	gi|408404259|ref|YP_006862242.1|	-	5e-10	40.0	0.5	5e-10	40.0	0.5	2.4	2	1	0	2	2	2	1	CDP-alcohol	phosphatidyltransferase
MerC	PF03203.14	gi|408404259|ref|YP_006862242.1|	-	0.015	15.7	6.0	0.54	10.7	6.0	2.4	1	1	1	2	2	2	0	MerC	mercury	resistance	protein
S_4TM	PF18159.1	gi|408404259|ref|YP_006862242.1|	-	2.8	7.2	4.1	0.92	8.7	0.3	1.9	2	0	0	2	2	2	0	SMODS-associating	4TM	effector	domain
Ribosomal_S26e	PF01283.19	gi|408404260|ref|YP_006862243.1|	-	1.5e-22	80.1	0.8	1.7e-22	79.9	0.8	1.1	1	0	0	1	1	1	1	Ribosomal	protein	S26e
zf-ribbon_3	PF13248.6	gi|408404260|ref|YP_006862243.1|	-	0.029	13.8	2.2	0.058	12.8	0.1	2.1	2	0	0	2	2	2	0	zinc-ribbon	domain
Lar_restr_allev	PF14354.6	gi|408404260|ref|YP_006862243.1|	-	0.031	14.7	0.3	0.62	10.5	0.0	2.1	1	1	1	2	2	2	0	Restriction	alleviation	protein	Lar
zf-dskA_traR	PF01258.17	gi|408404260|ref|YP_006862243.1|	-	0.045	13.7	0.5	2.9	7.9	0.0	2.2	2	0	0	2	2	2	0	Prokaryotic	dksA/traR	C4-type	zinc	finger
Auto_anti-p27	PF06677.12	gi|408404260|ref|YP_006862243.1|	-	0.081	13.1	1.0	10	6.4	0.1	2.3	2	0	0	2	2	2	0	Sjogren's	syndrome/scleroderma	autoantigen	1	(Autoantigen	p27)
DUF1610	PF07754.11	gi|408404260|ref|YP_006862243.1|	-	0.79	9.7	4.1	1.1	9.2	0.1	2.5	2	1	0	2	2	2	0	Domain	of	unknown	function	(DUF1610)
PfkB	PF00294.24	gi|408404262|ref|YP_006862245.1|	-	3.9e-08	33.0	0.0	1e-07	31.6	0.0	1.6	1	1	0	1	1	1	1	pfkB	family	carbohydrate	kinase
Phos_pyr_kin	PF08543.12	gi|408404262|ref|YP_006862245.1|	-	0.0037	16.7	0.0	0.0053	16.2	0.0	1.2	1	0	0	1	1	1	1	Phosphomethylpyrimidine	kinase
NAD_kinase	PF01513.21	gi|408404263|ref|YP_006862246.1|	-	1.3e-34	119.7	0.1	1.7e-34	119.3	0.1	1.1	1	0	0	1	1	1	1	ATP-NAD	kinase
HTH_24	PF13412.6	gi|408404263|ref|YP_006862246.1|	-	0.00027	20.4	0.1	0.00052	19.5	0.1	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
MarR_2	PF12802.7	gi|408404263|ref|YP_006862246.1|	-	0.00054	19.8	0.1	0.00094	19.0	0.1	1.4	1	0	0	1	1	1	1	MarR	family
RNA_pol_Rpc34	PF05158.12	gi|408404263|ref|YP_006862246.1|	-	0.00071	19.1	0.3	0.00096	18.6	0.3	1.1	1	0	0	1	1	1	1	RNA	polymerase	Rpc34	subunit
HTH_27	PF13463.6	gi|408404263|ref|YP_006862246.1|	-	0.0008	19.9	0.1	0.0023	18.4	0.1	1.8	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
MarR	PF01047.22	gi|408404263|ref|YP_006862246.1|	-	0.00081	19.3	0.3	0.0018	18.2	0.3	1.5	1	0	0	1	1	1	1	MarR	family
HTH_9	PF08221.11	gi|408404263|ref|YP_006862246.1|	-	0.016	15.3	0.1	0.035	14.2	0.1	1.5	1	0	0	1	1	1	0	RNA	polymerase	III	subunit	RPC82	helix-turn-helix	domain
HTH_IclR	PF09339.10	gi|408404263|ref|YP_006862246.1|	-	0.038	13.8	0.2	0.12	12.1	0.2	1.9	1	1	1	2	2	2	0	IclR	helix-turn-helix	domain
TrmB	PF01978.19	gi|408404263|ref|YP_006862246.1|	-	0.046	13.6	0.1	0.11	12.4	0.1	1.7	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
HTH_36	PF13730.6	gi|408404263|ref|YP_006862246.1|	-	0.12	12.4	0.0	0.46	10.5	0.0	2.0	1	1	0	1	1	1	0	Helix-turn-helix	domain
CTP_synth_N	PF06418.14	gi|408404264|ref|YP_006862247.1|	-	7.9e-120	399.1	0.3	9.9e-120	398.8	0.3	1.1	1	0	0	1	1	1	1	CTP	synthase	N-terminus
GATase	PF00117.28	gi|408404264|ref|YP_006862247.1|	-	1.4e-49	168.4	0.0	2.1e-49	167.9	0.0	1.3	1	0	0	1	1	1	1	Glutamine	amidotransferase	class-I
Peptidase_C26	PF07722.13	gi|408404264|ref|YP_006862247.1|	-	5.8e-09	36.0	0.0	3.1e-08	33.7	0.0	2.0	2	0	0	2	2	2	1	Peptidase	C26
CbiA	PF01656.23	gi|408404264|ref|YP_006862247.1|	-	0.022	14.8	0.0	0.046	13.8	0.0	1.6	2	1	0	2	2	2	0	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
Rox3	PF08633.10	gi|408404265|ref|YP_006862248.1|	-	0.077	13.3	0.0	0.1	12.9	0.0	1.2	1	0	0	1	1	1	0	Rox3	mediator	complex	subunit
DUF5471	PF17565.2	gi|408404265|ref|YP_006862248.1|	-	0.25	11.7	3.3	2.6	8.4	0.2	2.4	1	1	1	2	2	2	0	Family	of	unknown	function	(DUF5471)
LAGLIDADG_1	PF00961.19	gi|408404267|ref|YP_006862250.1|	-	0.015	16.2	0.7	0.02	15.8	0.7	1.3	1	1	0	1	1	1	0	LAGLIDADG	endonuclease
AAA_22	PF13401.6	gi|408404268|ref|YP_006862251.1|	-	7.4e-10	39.2	0.0	2e-09	37.8	0.0	1.6	2	0	0	2	2	2	1	AAA	domain
AAA_16	PF13191.6	gi|408404268|ref|YP_006862251.1|	-	3.9e-05	24.1	0.0	0.00029	21.3	0.0	2.2	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA	PF00004.29	gi|408404268|ref|YP_006862251.1|	-	0.00083	19.8	0.0	0.0032	17.9	0.0	2.0	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
TniB	PF05621.11	gi|408404268|ref|YP_006862251.1|	-	0.00085	18.8	0.1	0.0015	18.0	0.1	1.3	1	0	0	1	1	1	1	Bacterial	TniB	protein
TIP49_C	PF17856.1	gi|408404268|ref|YP_006862251.1|	-	0.0053	16.9	1.5	0.044	13.9	0.0	3.0	3	1	1	4	4	4	1	TIP49	AAA-lid	domain
MarR_2	PF12802.7	gi|408404268|ref|YP_006862251.1|	-	0.044	13.7	0.1	0.14	12.1	0.1	1.8	1	0	0	1	1	1	0	MarR	family
Cdc6_C	PF09079.11	gi|408404268|ref|YP_006862251.1|	-	0.052	13.5	0.1	0.2	11.6	0.1	2.0	1	0	0	1	1	1	0	CDC6,	C	terminal	winged	helix	domain
NB-ARC	PF00931.22	gi|408404268|ref|YP_006862251.1|	-	0.087	12.0	0.0	0.16	11.2	0.0	1.4	1	0	0	1	1	1	0	NB-ARC	domain
ATPase_2	PF01637.18	gi|408404268|ref|YP_006862251.1|	-	0.1	12.5	0.8	0.36	10.7	0.8	1.9	1	1	0	1	1	1	0	ATPase	domain	predominantly	from	Archaea
AAA_24	PF13479.6	gi|408404268|ref|YP_006862251.1|	-	0.13	11.9	0.0	0.5	10.1	0.0	2.0	3	1	0	3	3	3	0	AAA	domain
IGPS	PF00218.21	gi|408404269|ref|YP_006862252.1|	-	3.7e-64	216.3	0.6	4.3e-64	216.1	0.6	1.0	1	0	0	1	1	1	1	Indole-3-glycerol	phosphate	synthase
QRPTase_C	PF01729.19	gi|408404269|ref|YP_006862252.1|	-	2.5e-05	24.1	0.3	4.3e-05	23.3	0.1	1.5	2	0	0	2	2	2	1	Quinolinate	phosphoribosyl	transferase,	C-terminal	domain
NanE	PF04131.14	gi|408404269|ref|YP_006862252.1|	-	0.007	15.6	0.4	0.49	9.5	0.4	3.4	1	1	2	3	3	3	1	Putative	N-acetylmannosamine-6-phosphate	epimerase
His_biosynth	PF00977.21	gi|408404269|ref|YP_006862252.1|	-	0.07	12.6	0.2	0.2	11.1	0.0	1.7	2	0	0	2	2	2	0	Histidine	biosynthesis	protein
AP_endonuc_2	PF01261.24	gi|408404269|ref|YP_006862252.1|	-	0.076	12.4	0.0	0.12	11.7	0.0	1.4	1	0	0	1	1	1	0	Xylose	isomerase-like	TIM	barrel
Cellulase	PF00150.18	gi|408404269|ref|YP_006862252.1|	-	0.22	10.9	0.0	0.48	9.8	0.0	1.4	1	1	0	1	1	1	0	Cellulase	(glycosyl	hydrolase	family	5)
PALP	PF00291.25	gi|408404270|ref|YP_006862253.1|	-	4.9e-42	144.3	0.4	5.8e-42	144.1	0.4	1.1	1	0	0	1	1	1	1	Pyridoxal-phosphate	dependent	enzyme
Trp_syntA	PF00290.20	gi|408404271|ref|YP_006862254.1|	-	2e-86	289.0	0.2	2.3e-86	288.8	0.2	1.0	1	0	0	1	1	1	1	Tryptophan	synthase	alpha	chain
His_biosynth	PF00977.21	gi|408404271|ref|YP_006862254.1|	-	9.6e-07	28.5	0.1	1.8e-06	27.6	0.1	1.5	1	0	0	1	1	1	1	Histidine	biosynthesis	protein
ThiG	PF05690.14	gi|408404271|ref|YP_006862254.1|	-	7e-05	22.2	0.1	0.00014	21.3	0.1	1.5	1	0	0	1	1	1	1	Thiazole	biosynthesis	protein	ThiG
NanE	PF04131.14	gi|408404271|ref|YP_006862254.1|	-	0.00012	21.3	0.3	0.00038	19.7	0.1	1.8	2	0	0	2	2	2	1	Putative	N-acetylmannosamine-6-phosphate	epimerase
IMPDH	PF00478.25	gi|408404271|ref|YP_006862254.1|	-	0.00023	20.3	0.2	0.0055	15.7	0.0	2.2	2	0	0	2	2	2	1	IMP	dehydrogenase	/	GMP	reductase	domain
Ribul_P_3_epim	PF00834.19	gi|408404271|ref|YP_006862254.1|	-	0.00091	18.7	0.0	0.0028	17.1	0.0	1.8	2	0	0	2	2	2	1	Ribulose-phosphate	3	epimerase	family
PcrB	PF01884.17	gi|408404271|ref|YP_006862254.1|	-	0.001	18.6	0.5	0.01	15.3	0.1	2.1	2	0	0	2	2	2	1	PcrB	family
DHO_dh	PF01180.21	gi|408404271|ref|YP_006862254.1|	-	0.0012	18.1	0.1	0.0016	17.7	0.1	1.2	1	0	0	1	1	1	1	Dihydroorotate	dehydrogenase
IGPS	PF00218.21	gi|408404271|ref|YP_006862254.1|	-	0.13	11.5	0.0	0.26	10.4	0.0	1.5	1	0	0	1	1	1	0	Indole-3-glycerol	phosphate	synthase
HicA_toxin	PF07927.12	gi|408404273|ref|YP_006862256.1|	-	0.015	15.3	0.1	0.022	14.8	0.1	1.2	1	0	0	1	1	1	0	HicA	toxin	of	bacterial	toxin-antitoxin,
APG6_N	PF17675.1	gi|408404275|ref|YP_006862258.1|	-	0.0011	19.5	7.1	0.0011	19.5	7.1	2.8	2	1	1	3	3	2	1	Apg6	coiled-coil	region
T3SSipB	PF16535.5	gi|408404275|ref|YP_006862258.1|	-	0.014	15.8	14.8	0.53	10.7	4.2	3.1	1	1	1	2	2	2	0	Type	III	cell	invasion	protein	SipB
TMPIT	PF07851.13	gi|408404275|ref|YP_006862258.1|	-	0.019	14.3	14.8	0.075	12.3	5.4	2.1	1	1	1	2	2	2	0	TMPIT-like	protein
Cep57_CLD_2	PF14197.6	gi|408404275|ref|YP_006862258.1|	-	0.039	14.0	2.2	0.039	14.0	2.2	3.9	2	2	1	3	3	3	0	Centrosome	localisation	domain	of	PPC89
UPF0228	PF05727.11	gi|408404275|ref|YP_006862258.1|	-	0.044	13.6	0.6	0.13	12.1	0.6	1.8	1	0	0	1	1	1	0	Uncharacterised	protein	family	(UPF0228)
RVT_connect	PF06815.13	gi|408404275|ref|YP_006862258.1|	-	0.083	13.2	1.2	1.5	9.1	0.1	2.7	3	0	0	3	3	3	0	Reverse	transcriptase	connection	domain
DUF2408	PF10303.9	gi|408404275|ref|YP_006862258.1|	-	0.25	11.9	19.1	0.15	12.6	12.5	2.5	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF2408)
Trimer_CC	PF08954.11	gi|408404275|ref|YP_006862258.1|	-	0.26	10.9	11.4	2.1	8.0	0.0	3.9	3	2	1	4	4	4	0	Trimerisation	motif
DUF4407	PF14362.6	gi|408404275|ref|YP_006862258.1|	-	0.45	9.8	21.3	4.9	6.4	21.3	2.0	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4407)
Cupin_4	PF08007.12	gi|408404275|ref|YP_006862258.1|	-	0.56	9.6	6.5	0.16	11.4	2.0	2.0	2	0	0	2	2	2	0	Cupin	superfamily	protein
DUF641	PF04859.12	gi|408404275|ref|YP_006862258.1|	-	0.65	10.3	22.5	0.066	13.6	4.0	3.6	1	1	3	4	4	4	0	Plant	protein	of	unknown	function	(DUF641)
UPF0184	PF03670.13	gi|408404275|ref|YP_006862258.1|	-	0.68	10.4	8.9	2.8	8.4	0.1	3.7	2	2	2	4	4	4	0	Uncharacterised	protein	family	(UPF0184)
Spc7	PF08317.11	gi|408404275|ref|YP_006862258.1|	-	0.77	8.6	26.2	1.1	8.1	7.8	2.5	1	1	1	2	2	2	0	Spc7	kinetochore	protein
DUF1664	PF07889.12	gi|408404275|ref|YP_006862258.1|	-	1.1	9.3	19.6	0.58	10.2	3.6	3.4	2	2	1	3	3	3	0	Protein	of	unknown	function	(DUF1664)
FdhE	PF04216.12	gi|408404275|ref|YP_006862258.1|	-	1.8	8.4	9.2	1.3	8.8	7.6	1.6	1	1	0	1	1	1	0	Protein	involved	in	formate	dehydrogenase	formation
CCDC84	PF14968.6	gi|408404275|ref|YP_006862258.1|	-	2	7.9	7.7	2.9	7.4	7.6	1.4	1	1	0	1	1	1	0	Coiled	coil	protein	84
Fez1	PF06818.15	gi|408404275|ref|YP_006862258.1|	-	2.4	8.6	25.3	1.7e+02	2.6	25.2	2.2	1	1	0	1	1	1	0	Fez1
FUSC	PF04632.12	gi|408404275|ref|YP_006862258.1|	-	2.7	6.4	7.9	9.3	4.6	7.9	1.7	1	1	0	1	1	1	0	Fusaric	acid	resistance	protein	family
DUF16	PF01519.16	gi|408404275|ref|YP_006862258.1|	-	3.8	8.0	15.0	7	7.2	1.9	3.0	1	1	0	2	2	2	0	Protein	of	unknown	function	DUF16
Exonuc_VII_L	PF02601.15	gi|408404275|ref|YP_006862258.1|	-	5	6.6	20.9	7.4e+02	-0.5	20.9	2.1	1	1	0	1	1	1	0	Exonuclease	VII,	large	subunit
FapA	PF03961.13	gi|408404275|ref|YP_006862258.1|	-	9.3	4.7	22.3	0.39	9.3	4.3	2.6	1	1	1	2	2	2	0	Flagellar	Assembly	Protein	A
Rad51	PF08423.11	gi|408404276|ref|YP_006862259.1|	-	4.6e-86	288.2	0.0	6e-86	287.8	0.0	1.1	1	0	0	1	1	1	1	Rad51
RecA	PF00154.21	gi|408404276|ref|YP_006862259.1|	-	7.7e-11	42.0	0.1	1.3e-10	41.2	0.1	1.3	1	0	0	1	1	1	1	recA	bacterial	DNA	recombination	protein
ATPase	PF06745.13	gi|408404276|ref|YP_006862259.1|	-	2.5e-10	40.1	0.1	5e-10	39.1	0.1	1.6	1	0	0	1	1	1	1	KaiC
HHH_5	PF14520.6	gi|408404276|ref|YP_006862259.1|	-	5.5e-09	36.5	0.8	1.8e-08	34.9	0.8	1.9	1	0	0	1	1	1	1	Helix-hairpin-helix	domain
DUF4332	PF14229.6	gi|408404276|ref|YP_006862259.1|	-	0.0034	17.6	0.2	0.011	16.0	0.1	2.0	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF4332)
Cdd1	PF11731.8	gi|408404276|ref|YP_006862259.1|	-	0.011	16.0	0.0	0.02	15.1	0.0	1.4	1	0	0	1	1	1	0	Pathogenicity	locus
DNA_pol_lambd_f	PF10391.9	gi|408404276|ref|YP_006862259.1|	-	0.021	14.7	0.0	0.05	13.4	0.0	1.7	1	0	0	1	1	1	0	Fingers	domain	of	DNA	polymerase	lambda
AAA	PF00004.29	gi|408404276|ref|YP_006862259.1|	-	0.07	13.5	1.1	0.43	11.0	0.2	2.5	2	1	0	2	2	2	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
IMS_HHH	PF11798.8	gi|408404276|ref|YP_006862259.1|	-	0.14	12.6	0.0	0.41	11.1	0.0	1.9	1	0	0	1	1	1	0	IMS	family	HHH	motif
Glycos_transf_3	PF00591.21	gi|408404277|ref|YP_006862260.1|	-	3e-78	262.9	0.4	3.8e-78	262.6	0.4	1.1	1	0	0	1	1	1	1	Glycosyl	transferase	family,	a/b	domain
Glycos_trans_3N	PF02885.17	gi|408404277|ref|YP_006862260.1|	-	1.6e-12	47.1	0.0	3.2e-12	46.1	0.0	1.5	1	0	0	1	1	1	1	Glycosyl	transferase	family,	helical	bundle	domain
GATase	PF00117.28	gi|408404278|ref|YP_006862261.1|	-	9.7e-56	188.5	0.1	1.1e-55	188.4	0.1	1.0	1	0	0	1	1	1	1	Glutamine	amidotransferase	class-I
Peptidase_C26	PF07722.13	gi|408404278|ref|YP_006862261.1|	-	1.5e-10	41.2	0.0	2.7e-10	40.4	0.0	1.4	1	0	0	1	1	1	1	Peptidase	C26
DapB_N	PF01113.20	gi|408404279|ref|YP_006862262.1|	-	1.7e-06	28.2	0.1	1.8e-05	24.8	0.1	2.2	2	0	0	2	2	2	1	Dihydrodipicolinate	reductase,	N-terminus
Gp_dh_N	PF00044.24	gi|408404279|ref|YP_006862262.1|	-	0.00011	22.5	0.5	0.00061	20.1	0.1	2.4	3	0	0	3	3	3	1	Glyceraldehyde	3-phosphate	dehydrogenase,	NAD	binding	domain
Gp_dh_C	PF02800.20	gi|408404279|ref|YP_006862262.1|	-	0.00095	18.8	0.0	0.0022	17.6	0.0	1.7	1	0	0	1	1	1	1	Glyceraldehyde	3-phosphate	dehydrogenase,	C-terminal	domain
F420_oxidored	PF03807.17	gi|408404279|ref|YP_006862262.1|	-	0.0054	17.3	0.3	0.022	15.4	0.3	2.0	1	1	0	1	1	1	1	NADP	oxidoreductase	coenzyme	F420-dependent
TrkA_N	PF02254.18	gi|408404279|ref|YP_006862262.1|	-	0.12	12.7	0.0	0.26	11.6	0.0	1.6	1	0	0	1	1	1	0	TrkA-N	domain
Methyltransf_21	PF05050.12	gi|408404283|ref|YP_006862266.1|	-	3e-21	76.2	0.1	4.2e-21	75.7	0.1	1.2	1	0	0	1	1	1	1	Methyltransferase	FkbM	domain
Met_10	PF02475.16	gi|408404283|ref|YP_006862266.1|	-	3.8e-09	36.6	0.0	6.6e-09	35.8	0.0	1.4	1	0	0	1	1	1	1	Met-10+	like-protein
V_cholerae_RfbT	PF05575.11	gi|408404283|ref|YP_006862266.1|	-	0.001	18.4	0.6	0.0015	17.9	0.6	1.1	1	0	0	1	1	1	1	Vibrio	cholerae	RfbT	protein
PCMT	PF01135.19	gi|408404283|ref|YP_006862266.1|	-	0.0088	15.8	0.0	0.014	15.2	0.0	1.2	1	0	0	1	1	1	1	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
Methyltransf_10	PF05971.12	gi|408404283|ref|YP_006862266.1|	-	0.049	13.0	0.0	0.068	12.5	0.0	1.3	1	0	0	1	1	1	0	RNA	methyltransferase
FtsJ	PF01728.19	gi|408404283|ref|YP_006862266.1|	-	0.19	11.8	0.0	0.56	10.3	0.0	1.5	1	1	0	1	1	1	0	FtsJ-like	methyltransferase
Methyltransf_21	PF05050.12	gi|408404284|ref|YP_006862267.1|	-	1.5e-22	80.5	0.0	2.4e-22	79.8	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	FkbM	domain
Met_10	PF02475.16	gi|408404284|ref|YP_006862267.1|	-	1e-10	41.7	0.0	2.2e-10	40.6	0.0	1.5	1	0	0	1	1	1	1	Met-10+	like-protein
Methyltransf_3	PF01596.17	gi|408404284|ref|YP_006862267.1|	-	0.0042	16.3	0.0	0.0071	15.5	0.0	1.3	1	0	0	1	1	1	1	O-methyltransferase
Methyltransf_4	PF02390.17	gi|408404284|ref|YP_006862267.1|	-	0.034	13.6	0.0	0.059	12.8	0.0	1.3	1	0	0	1	1	1	0	Putative	methyltransferase
PCMT	PF01135.19	gi|408404284|ref|YP_006862267.1|	-	0.066	13.0	0.0	0.11	12.2	0.0	1.3	1	0	0	1	1	1	0	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
FtsJ	PF01728.19	gi|408404284|ref|YP_006862267.1|	-	0.072	13.2	0.0	0.1	12.7	0.0	1.3	1	0	0	1	1	1	0	FtsJ-like	methyltransferase
Methyltr_RsmB-F	PF01189.17	gi|408404284|ref|YP_006862267.1|	-	0.073	12.7	0.0	0.14	11.8	0.0	1.4	1	0	0	1	1	1	0	16S	rRNA	methyltransferase	RsmB/F
Glyco_transf_4	PF13439.6	gi|408404285|ref|YP_006862268.1|	-	2.3e-08	34.2	0.0	1.4e-07	31.7	0.0	2.2	1	1	0	1	1	1	1	Glycosyltransferase	Family	4
Glyco_trans_1_4	PF13692.6	gi|408404285|ref|YP_006862268.1|	-	5e-06	27.0	0.0	2e-05	25.1	0.0	2.0	2	0	0	2	2	2	1	Glycosyl	transferases	group	1
Glyco_trans_1_2	PF13524.6	gi|408404285|ref|YP_006862268.1|	-	2.3e-05	24.7	0.0	5.3e-05	23.5	0.0	1.5	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glycos_transf_1	PF00534.20	gi|408404285|ref|YP_006862268.1|	-	2.8e-05	23.7	0.0	9.1e-05	22.0	0.0	1.8	2	0	0	2	2	2	1	Glycosyl	transferases	group	1
Glyco_trans_4_4	PF13579.6	gi|408404285|ref|YP_006862268.1|	-	0.00037	21.0	0.0	0.019	15.4	0.0	2.5	1	1	0	1	1	1	1	Glycosyl	transferase	4-like	domain
Glyco_transf_5	PF08323.11	gi|408404285|ref|YP_006862268.1|	-	0.00061	19.6	0.1	0.0061	16.3	0.0	2.3	1	1	0	2	2	2	1	Starch	synthase	catalytic	domain
Phage_Gp23	PF10669.9	gi|408404286|ref|YP_006862269.1|	-	0.0023	18.3	1.4	0.0083	16.5	1.4	1.8	1	1	0	1	1	1	1	Protein	gp23	(Bacteriophage	A118)
Wzy_C	PF04932.15	gi|408404286|ref|YP_006862269.1|	-	0.0032	17.1	0.2	0.0038	16.9	0.2	1.2	1	0	0	1	1	1	1	O-Antigen	ligase
ATP-synt_A	PF00119.20	gi|408404286|ref|YP_006862269.1|	-	0.0037	17.3	0.4	0.004	17.1	0.4	1.1	1	0	0	1	1	1	1	ATP	synthase	A	chain
Glyco_transf_4	PF13439.6	gi|408404287|ref|YP_006862270.1|	-	3.4e-08	33.7	0.3	5.2e-07	29.8	0.3	2.4	1	1	0	1	1	1	1	Glycosyltransferase	Family	4
Glyco_trans_1_4	PF13692.6	gi|408404287|ref|YP_006862270.1|	-	5.6e-07	30.1	0.0	1.2e-06	29.0	0.0	1.5	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_transf_5	PF08323.11	gi|408404287|ref|YP_006862270.1|	-	0.00063	19.5	0.0	0.0037	17.0	0.0	2.3	3	0	0	3	3	3	1	Starch	synthase	catalytic	domain
Glycos_transf_1	PF00534.20	gi|408404287|ref|YP_006862270.1|	-	0.00079	19.0	0.0	0.005	16.4	0.0	2.1	2	0	0	2	2	2	1	Glycosyl	transferases	group	1
Glyco_trans_4_4	PF13579.6	gi|408404287|ref|YP_006862270.1|	-	0.079	13.4	0.0	0.24	11.8	0.0	1.9	1	1	0	1	1	1	0	Glycosyl	transferase	4-like	domain
Glycos_transf_1	PF00534.20	gi|408404288|ref|YP_006862271.1|	-	6.5e-23	81.1	0.0	1.4e-22	80.1	0.0	1.5	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.6	gi|408404288|ref|YP_006862271.1|	-	1.3e-10	41.9	0.0	3e-10	40.6	0.0	1.6	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_transf_4	PF13439.6	gi|408404288|ref|YP_006862271.1|	-	2.1e-10	40.9	0.0	3.5e-10	40.2	0.0	1.4	1	0	0	1	1	1	1	Glycosyltransferase	Family	4
Lactamase_B_5	PF14597.6	gi|408404288|ref|YP_006862271.1|	-	0.089	12.3	0.0	0.15	11.5	0.0	1.3	1	0	0	1	1	1	0	Metallo-beta-lactamase	superfamily
mRNA_cap_enzyme	PF01331.19	gi|408404290|ref|YP_006862273.1|	-	0.015	15.1	0.1	0.016	15.0	0.1	1.1	1	0	0	1	1	1	0	mRNA	capping	enzyme,	catalytic	domain
CBS	PF00571.28	gi|408404293|ref|YP_006862276.1|	-	8e-18	64.6	3.0	7.6e-11	42.3	0.2	2.3	2	0	0	2	2	2	2	CBS	domain
HTH_3	PF01381.22	gi|408404293|ref|YP_006862276.1|	-	3.6e-13	49.4	0.2	6.5e-13	48.5	0.2	1.4	1	0	0	1	1	1	1	Helix-turn-helix
HTH_19	PF12844.7	gi|408404293|ref|YP_006862276.1|	-	3.7e-10	39.7	0.1	7e-10	38.8	0.1	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_31	PF13560.6	gi|408404293|ref|YP_006862276.1|	-	8.3e-10	38.9	0.0	1.3e-09	38.2	0.0	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_25	PF13413.6	gi|408404293|ref|YP_006862276.1|	-	0.00028	20.7	0.0	0.00047	20.0	0.0	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
MqsA_antitoxin	PF15731.5	gi|408404293|ref|YP_006862276.1|	-	0.014	15.5	0.0	0.026	14.6	0.0	1.4	1	0	0	1	1	1	0	Antitoxin	component	of	bacterial	toxin-antitoxin	system,	MqsA
HTH_37	PF13744.6	gi|408404293|ref|YP_006862276.1|	-	0.025	14.5	0.0	0.14	12.2	0.0	2.0	2	0	0	2	2	2	0	Helix-turn-helix	domain
HTH_24	PF13412.6	gi|408404293|ref|YP_006862276.1|	-	0.099	12.2	0.1	0.98	9.0	0.1	2.4	2	0	0	2	2	2	0	Winged	helix-turn-helix	DNA-binding
Pou	PF00157.17	gi|408404293|ref|YP_006862276.1|	-	0.15	12.0	0.1	0.37	10.8	0.1	1.6	1	0	0	1	1	1	0	Pou	domain	-	N-terminal	to	homeobox	domain
DUF4157	PF13699.6	gi|408404295|ref|YP_006862278.1|	-	3.8e-25	87.9	0.0	8.5e-25	86.8	0.0	1.6	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4157)
eRF1_2	PF03464.15	gi|408404296|ref|YP_006862279.1|	-	1.4e-37	128.9	0.0	3.2e-37	127.8	0.0	1.6	1	0	0	1	1	1	1	eRF1	domain	2
eRF1_3	PF03465.15	gi|408404296|ref|YP_006862279.1|	-	1.6e-21	76.9	0.1	4.1e-21	75.6	0.1	1.8	1	0	0	1	1	1	1	eRF1	domain	3
acVLRF1	PF18859.1	gi|408404296|ref|YP_006862279.1|	-	3.1e-15	56.6	0.0	5.8e-15	55.7	0.0	1.4	1	0	0	1	1	1	1	Actinobacteria/chloroflexi	VLRF1	release	factor
baeRF_family10	PF18854.1	gi|408404296|ref|YP_006862279.1|	-	3.6e-12	46.7	0.0	1.7e-11	44.5	0.0	2.0	2	0	0	2	2	2	1	Bacterial	archaeo-eukaryotic	release	factor	family	10
eRF1_1	PF03463.15	gi|408404296|ref|YP_006862279.1|	-	4.5e-12	46.1	0.0	7.9e-12	45.3	0.0	1.4	1	0	0	1	1	1	1	eRF1	domain	1
Zn-ribbon_8	PF09723.10	gi|408404296|ref|YP_006862279.1|	-	0.0075	16.4	2.2	0.012	15.7	0.8	2.1	2	0	0	2	2	2	1	Zinc	ribbon	domain
Ribosomal_L7Ae	PF01248.26	gi|408404296|ref|YP_006862279.1|	-	0.037	13.8	0.2	0.091	12.5	0.2	1.7	1	0	0	1	1	1	0	Ribosomal	protein	L7Ae/L30e/S12e/Gadd45	family
HypA	PF01155.19	gi|408404296|ref|YP_006862279.1|	-	0.045	13.8	0.1	0.095	12.7	0.1	1.6	1	0	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
Glyco_transf_90	PF05686.12	gi|408404296|ref|YP_006862279.1|	-	0.16	10.8	0.0	0.25	10.2	0.0	1.2	1	0	0	1	1	1	0	Glycosyl	transferase	family	90
EBV-NA1	PF02905.14	gi|408404296|ref|YP_006862279.1|	-	0.27	11.1	0.8	13	5.6	0.1	2.5	2	0	0	2	2	2	0	Epstein	Barr	virus	nuclear	antigen-1,	DNA-binding	domain
zf-IS66	PF13005.7	gi|408404296|ref|YP_006862279.1|	-	1.5	9.3	4.3	1e+02	3.4	0.2	3.5	3	0	0	3	3	3	0	zinc-finger	binding	domain	of	transposase	IS66
HATPase_c_3	PF13589.6	gi|408404297|ref|YP_006862280.1|	-	6.1e-14	52.0	0.0	1.2e-13	51.0	0.0	1.5	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HATPase_c	PF02518.26	gi|408404297|ref|YP_006862280.1|	-	0.047	14.2	0.0	0.15	12.6	0.0	1.9	1	0	0	1	1	1	0	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
Proteasome	PF00227.26	gi|408404298|ref|YP_006862281.1|	-	2.7e-51	173.8	0.2	3.3e-51	173.5	0.2	1.0	1	0	0	1	1	1	1	Proteasome	subunit
MVP_shoulder	PF11978.8	gi|408404298|ref|YP_006862281.1|	-	0.1	12.7	0.1	0.19	11.7	0.1	1.4	1	0	0	1	1	1	0	Shoulder	domain
PUA	PF01472.20	gi|408404299|ref|YP_006862282.1|	-	2.7e-19	68.9	0.5	5.9e-19	67.8	0.5	1.6	1	0	0	1	1	1	1	PUA	domain
GCV_H	PF01597.19	gi|408404299|ref|YP_006862282.1|	-	0.018	14.9	0.2	0.033	14.1	0.2	1.4	1	0	0	1	1	1	0	Glycine	cleavage	H-protein
UPF0113	PF03657.13	gi|408404299|ref|YP_006862282.1|	-	0.075	13.3	0.1	0.15	12.3	0.1	1.5	1	0	0	1	1	1	0	UPF0113	PUA	domain
AIM24	PF01987.17	gi|408404300|ref|YP_006862283.1|	-	3.3e-27	95.6	0.1	3.6e-27	95.5	0.1	1.0	1	0	0	1	1	1	1	Mitochondrial	biogenesis	AIM24
Gin	PF10764.9	gi|408404301|ref|YP_006862284.1|	-	0.0073	16.2	1.1	0.89	9.6	0.1	2.1	1	1	1	2	2	2	2	Inhibitor	of	sigma-G	Gin
zf-FPG_IleRS	PF06827.14	gi|408404301|ref|YP_006862284.1|	-	0.017	14.9	0.5	2.7	7.9	0.1	2.1	2	0	0	2	2	2	0	Zinc	finger	found	in	FPG	and	IleRS
Homoserine_dh	PF00742.19	gi|408404302|ref|YP_006862285.1|	-	1.2e-56	191.4	0.4	1.7e-56	190.9	0.4	1.2	1	0	0	1	1	1	1	Homoserine	dehydrogenase
NAD_binding_3	PF03447.16	gi|408404302|ref|YP_006862285.1|	-	2.3e-07	31.5	0.0	8.7e-07	29.6	0.0	2.0	1	1	0	1	1	1	1	Homoserine	dehydrogenase,	NAD	binding	domain
ELFV_dehydrog	PF00208.21	gi|408404302|ref|YP_006862285.1|	-	1e-05	25.4	0.1	2.7e-05	24.0	0.1	1.7	1	1	0	1	1	1	1	Glutamate/Leucine/Phenylalanine/Valine	dehydrogenase
GFO_IDH_MocA	PF01408.22	gi|408404302|ref|YP_006862285.1|	-	0.0067	17.2	0.0	0.013	16.3	0.0	1.5	1	0	0	1	1	1	1	Oxidoreductase	family,	NAD-binding	Rossmann	fold
HTH_AsnC-type	PF13404.6	gi|408404303|ref|YP_006862286.1|	-	3.5e-11	42.7	1.7	7.6e-11	41.7	1.7	1.6	1	0	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
AsnC_trans_reg	PF01037.21	gi|408404303|ref|YP_006862286.1|	-	8.3e-10	38.5	0.0	1.3e-09	37.9	0.0	1.3	1	0	0	1	1	1	1	Lrp/AsnC	ligand	binding	domain
HTH_24	PF13412.6	gi|408404303|ref|YP_006862286.1|	-	3.8e-09	36.0	0.7	6.5e-09	35.2	0.7	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_11	PF08279.12	gi|408404303|ref|YP_006862286.1|	-	2.7e-05	24.0	0.3	5.6e-05	23.0	0.3	1.5	1	0	0	1	1	1	1	HTH	domain
HTH_Mga	PF08280.11	gi|408404303|ref|YP_006862286.1|	-	0.0032	17.5	0.0	0.0053	16.8	0.0	1.4	1	0	0	1	1	1	1	M	protein	trans-acting	positive	regulator	(MGA)	HTH	domain
HTH_DeoR	PF08220.12	gi|408404303|ref|YP_006862286.1|	-	0.0077	15.9	0.5	0.019	14.7	0.5	1.6	1	0	0	1	1	1	1	DeoR-like	helix-turn-helix	domain
HrcA_DNA-bdg	PF03444.15	gi|408404303|ref|YP_006862286.1|	-	0.016	14.9	0.5	0.042	13.5	0.1	1.9	2	0	0	2	2	2	0	Winged	helix-turn-helix	transcription	repressor,	HrcA	DNA-binding
NapD	PF03927.13	gi|408404303|ref|YP_006862286.1|	-	0.028	14.5	0.1	0.047	13.7	0.1	1.3	1	0	0	1	1	1	0	NapD	protein
Stk19	PF10494.9	gi|408404303|ref|YP_006862286.1|	-	0.042	13.5	0.1	0.042	13.5	0.1	1.2	1	0	0	1	1	1	0	Serine-threonine	protein	kinase	19
PaaX	PF07848.12	gi|408404303|ref|YP_006862286.1|	-	0.044	14.0	0.3	0.088	13.0	0.3	1.4	1	0	0	1	1	1	0	PaaX-like	protein
HTH_20	PF12840.7	gi|408404303|ref|YP_006862286.1|	-	0.12	12.4	0.1	0.23	11.6	0.1	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain
Phage_integrase	PF00589.22	gi|408404304|ref|YP_006862287.1|	-	1.4e-06	28.2	1.9	2.7e-05	24.0	0.1	3.0	2	1	0	2	2	2	1	Phage	integrase	family
Phage_int_SAM_1	PF02899.17	gi|408404304|ref|YP_006862287.1|	-	1.8e-05	25.0	0.1	8.3e-05	22.8	0.0	2.2	2	0	0	2	2	2	1	Phage	integrase,	N-terminal	SAM-like	domain
Phage_int_SAM_4	PF13495.6	gi|408404304|ref|YP_006862287.1|	-	9.1e-05	22.9	0.8	0.0004	20.8	0.5	2.3	2	0	0	2	2	2	1	Phage	integrase,	N-terminal	SAM-like	domain
Phage_integr_3	PF16795.5	gi|408404304|ref|YP_006862287.1|	-	0.0034	17.3	0.8	0.37	10.7	0.0	3.1	3	0	0	3	3	3	1	Archaeal	phage	integrase
DUF1676	PF07898.13	gi|408404304|ref|YP_006862287.1|	-	0.32	11.0	4.0	0.7	9.9	0.7	2.2	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1676)
Clenterotox	PF03505.14	gi|408404305|ref|YP_006862288.1|	-	0.13	11.8	0.0	0.24	11.0	0.0	1.4	1	0	0	1	1	1	0	Clostridium	enterotoxin
MazE_antitoxin	PF04014.18	gi|408404306|ref|YP_006862289.1|	-	4.1e-05	23.4	0.0	5.4e-05	23.0	0.0	1.1	1	0	0	1	1	1	1	Antidote-toxin	recognition	MazE,	bacterial	antitoxin
THP2	PF09432.10	gi|408404307|ref|YP_006862290.1|	-	0.0005	20.1	0.9	0.00059	19.9	0.9	1.1	1	0	0	1	1	1	1	Tho	complex	subunit	THP2
Mod_r	PF07200.13	gi|408404307|ref|YP_006862290.1|	-	0.0015	18.7	0.8	0.0017	18.4	0.8	1.0	1	0	0	1	1	1	1	Modifier	of	rudimentary	(Mod(r))	protein
Dak2	PF02734.17	gi|408404307|ref|YP_006862290.1|	-	0.026	14.4	0.1	0.028	14.3	0.1	1.1	1	0	0	1	1	1	0	DAK2	domain
Spc42p	PF11544.8	gi|408404307|ref|YP_006862290.1|	-	0.037	14.0	1.5	4.5	7.3	0.0	2.3	2	1	0	2	2	2	0	Spindle	pole	body	component	Spc42p
WWE	PF02825.20	gi|408404307|ref|YP_006862290.1|	-	0.11	13.1	0.1	1.4	9.6	0.1	2.0	1	1	0	1	1	1	0	WWE	domain
Val_tRNA-synt_C	PF10458.9	gi|408404307|ref|YP_006862290.1|	-	0.11	12.8	2.6	0.42	10.9	0.1	2.5	2	1	1	3	3	3	0	Valyl	tRNA	synthetase	tRNA	binding	arm
IRF-2BP1_2	PF11261.8	gi|408404308|ref|YP_006862291.1|	-	0.081	12.5	0.0	0.13	11.8	0.0	1.5	1	0	0	1	1	1	0	Interferon	regulatory	factor	2-binding	protein	zinc	finger
MCM	PF00493.23	gi|408404309|ref|YP_006862292.1|	-	5.1e-18	65.0	0.1	8.8e-18	64.2	0.1	1.4	1	0	0	1	1	1	1	MCM	P-loop	domain
Roc	PF08477.13	gi|408404309|ref|YP_006862292.1|	-	0.12	12.6	0.1	0.56	10.4	0.1	2.1	2	0	0	2	2	2	0	Ras	of	Complex,	Roc,	domain	of	DAPkinase
FliMN_C	PF01052.20	gi|408404311|ref|YP_006862294.1|	-	0.05	13.6	0.1	0.068	13.2	0.1	1.2	1	0	0	1	1	1	0	Type	III	flagellar	switch	regulator	(C-ring)	FliN	C-term
zf-CSL	PF05207.13	gi|408404312|ref|YP_006862295.1|	-	0.003	17.2	0.0	0.0046	16.6	0.0	1.3	1	0	0	1	1	1	1	CSL	zinc	finger
ProRS-C_1	PF09180.11	gi|408404312|ref|YP_006862295.1|	-	0.08	13.2	0.1	0.099	12.9	0.1	1.2	1	0	0	1	1	1	0	Prolyl-tRNA	synthetase,	C-terminal
MazE_antitoxin	PF04014.18	gi|408404313|ref|YP_006862296.1|	-	3.6e-09	36.4	0.1	4.2e-09	36.1	0.1	1.1	1	0	0	1	1	1	1	Antidote-toxin	recognition	MazE,	bacterial	antitoxin
CusF_Ec	PF11604.8	gi|408404313|ref|YP_006862296.1|	-	0.062	13.3	0.0	0.082	12.9	0.0	1.2	1	0	0	1	1	1	0	Copper	binding	periplasmic	protein	CusF
PP_kinase	PF02503.17	gi|408404314|ref|YP_006862297.1|	-	0.00034	20.2	0.0	0.00051	19.7	0.0	1.2	1	0	0	1	1	1	1	Polyphosphate	kinase	middle	domain
DHNA	PF04038.12	gi|408404314|ref|YP_006862297.1|	-	0.13	12.8	0.0	0.25	11.9	0.0	1.5	1	0	0	1	1	1	0	Dihydroneopterin	aldolase
NUC	PF18510.1	gi|408404315|ref|YP_006862298.1|	-	0.09	13.2	0.1	0.12	12.8	0.1	1.2	1	0	0	1	1	1	0	Nuclease	domain
Aida_N	PF08910.10	gi|408404315|ref|YP_006862298.1|	-	0.098	13.1	0.1	0.14	12.5	0.1	1.3	1	0	0	1	1	1	0	Aida	N-terminus
DUF1056	PF06341.11	gi|408404316|ref|YP_006862299.1|	-	0.005	17.1	2.8	0.0067	16.7	2.8	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1056)
DUF3021	PF11457.8	gi|408404316|ref|YP_006862299.1|	-	0.011	16.1	2.1	0.014	15.7	2.1	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3021)
NVEALA	PF14055.6	gi|408404316|ref|YP_006862299.1|	-	1.2	9.2	3.4	1.3	9.1	0.4	2.5	1	1	2	3	3	3	0	NVEALA	protein
PMP1_2	PF08114.11	gi|408404316|ref|YP_006862299.1|	-	1.7	8.4	8.0	0.26	11.1	2.1	2.5	1	1	1	2	2	2	0	ATPase	proteolipid	family
Y_phosphatase	PF00102.27	gi|408404317|ref|YP_006862300.1|	-	0.036	13.6	0.2	0.054	13.0	0.2	1.3	1	0	0	1	1	1	0	Protein-tyrosine	phosphatase
TF_Zn_Ribbon	PF08271.12	gi|408404318|ref|YP_006862301.1|	-	0.0042	16.6	0.9	0.0081	15.6	0.9	1.4	1	0	0	1	1	1	1	TFIIB	zinc-binding
HTH_22	PF13309.6	gi|408404319|ref|YP_006862302.1|	-	0.13	12.3	0.0	0.32	11.1	0.0	1.7	2	0	0	2	2	2	0	HTH	domain
DNA_processg_A	PF02481.15	gi|408404321|ref|YP_006862304.1|	-	1.2e-54	184.8	0.0	1.4e-54	184.6	0.0	1.0	1	0	0	1	1	1	1	DNA	recombination-mediator	protein	A
LDcluster4	PF18306.1	gi|408404321|ref|YP_006862304.1|	-	2.9e-06	26.9	0.2	5.8e-06	26.0	0.2	1.5	1	1	0	1	1	1	1	SLOG	cluster4	family
STALD	PF18185.1	gi|408404321|ref|YP_006862304.1|	-	0.0006	19.2	0.0	0.062	12.6	0.0	2.1	1	1	1	2	2	2	2	Sir2-	and	TIR-associating	SLOG	family
PRTase_2	PF15609.6	gi|408404322|ref|YP_006862305.1|	-	0.00022	20.8	0.0	0.00032	20.3	0.0	1.2	1	0	0	1	1	1	1	Phosphoribosyl	transferase
Pribosyltran	PF00156.27	gi|408404322|ref|YP_006862305.1|	-	0.002	17.7	0.0	0.0028	17.2	0.0	1.4	1	1	0	1	1	1	1	Phosphoribosyl	transferase	domain
MazE_antitoxin	PF04014.18	gi|408404323|ref|YP_006862306.1|	-	0.0004	20.2	0.1	0.00074	19.4	0.1	1.6	1	1	0	1	1	1	1	Antidote-toxin	recognition	MazE,	bacterial	antitoxin
B3	PF02362.21	gi|408404323|ref|YP_006862306.1|	-	0.11	12.3	0.0	0.2	11.5	0.0	1.2	1	1	0	1	1	1	0	B3	DNA	binding	domain
TauE	PF01925.19	gi|408404324|ref|YP_006862307.1|	-	9.8e-54	182.5	33.9	1.2e-53	182.2	33.9	1.0	1	0	0	1	1	1	1	Sulfite	exporter	TauE/SafE
Ceramidase	PF05875.12	gi|408404324|ref|YP_006862307.1|	-	0.024	14.1	0.2	0.043	13.2	0.2	1.4	1	0	0	1	1	1	0	Ceramidase
NADH-u_ox-rdase	PF10785.9	gi|408404324|ref|YP_006862307.1|	-	1.9	9.2	12.2	1.9	9.2	0.2	3.5	3	1	1	4	4	4	0	NADH-ubiquinone	oxidoreductase	complex	I,	21	kDa	subunit
DUF5423	PF17461.2	gi|408404324|ref|YP_006862307.1|	-	4.4	6.1	7.2	0.39	9.5	0.2	2.2	1	1	0	2	2	2	0	Family	of	unknown	function	(DUF5423)
adh_short_C2	PF13561.6	gi|408404325|ref|YP_006862308.1|	-	3e-42	144.8	3.3	1.1e-29	103.7	0.1	3.2	3	0	0	3	3	3	3	Enoyl-(Acyl	carrier	protein)	reductase
adh_short	PF00106.25	gi|408404325|ref|YP_006862308.1|	-	4.8e-40	137.1	7.5	3.2e-35	121.3	0.5	2.9	3	0	0	3	3	3	2	short	chain	dehydrogenase
KR	PF08659.10	gi|408404325|ref|YP_006862308.1|	-	3.1e-15	56.6	3.9	3.4e-12	46.7	0.2	3.4	4	1	0	4	4	4	2	KR	domain
Epimerase	PF01370.21	gi|408404325|ref|YP_006862308.1|	-	0.00014	21.4	2.4	0.062	12.7	0.1	2.8	3	0	0	3	3	3	2	NAD	dependent	epimerase/dehydratase	family
3HCDH_N	PF02737.18	gi|408404325|ref|YP_006862308.1|	-	0.00038	20.4	0.9	0.00038	20.4	0.9	2.3	2	0	0	2	2	2	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
THF_DHG_CYH_C	PF02882.19	gi|408404325|ref|YP_006862308.1|	-	0.0009	18.6	1.0	0.032	13.6	0.3	2.6	2	1	0	2	2	2	1	Tetrahydrofolate	dehydrogenase/cyclohydrolase,	NAD(P)-binding	domain
PDH	PF02153.17	gi|408404325|ref|YP_006862308.1|	-	0.00092	18.3	0.0	0.0036	16.4	0.0	2.0	2	0	0	2	2	2	1	Prephenate	dehydrogenase
2-Hacid_dh_C	PF02826.19	gi|408404325|ref|YP_006862308.1|	-	0.0015	17.9	1.7	0.0063	15.9	0.3	2.5	2	1	1	3	3	3	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
FlaG	PF03646.15	gi|408404325|ref|YP_006862308.1|	-	0.042	14.0	1.5	0.12	12.5	1.5	1.8	1	0	0	1	1	1	0	FlaG	protein
ISG65-75	PF11727.8	gi|408404325|ref|YP_006862308.1|	-	0.044	13.0	0.3	0.044	13.0	0.3	1.8	2	0	0	2	2	2	0	Invariant	surface	glycoprotein
ApbA	PF02558.16	gi|408404325|ref|YP_006862308.1|	-	0.071	12.8	0.2	2.3	7.8	0.1	2.4	2	0	0	2	2	2	0	Ketopantoate	reductase	PanE/ApbA
Shikimate_DH	PF01488.20	gi|408404325|ref|YP_006862308.1|	-	0.075	13.1	0.1	0.075	13.1	0.1	2.6	3	0	0	3	3	3	0	Shikimate	/	quinate	5-dehydrogenase
IF-2B	PF01008.17	gi|408404325|ref|YP_006862308.1|	-	0.081	12.1	1.9	0.4	9.9	1.4	2.0	2	0	0	2	2	2	0	Initiation	factor	2	subunit	family
NAD_binding_7	PF13241.6	gi|408404325|ref|YP_006862308.1|	-	0.12	12.8	6.9	0.25	11.8	0.1	3.2	4	0	0	4	4	4	0	Putative	NAD(P)-binding
DUF5052	PF16475.5	gi|408404325|ref|YP_006862308.1|	-	0.15	11.7	2.3	0.16	11.6	0.1	2.1	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF5052)
NAD_binding_10	PF13460.6	gi|408404325|ref|YP_006862308.1|	-	0.4	10.5	3.1	19	5.1	0.1	3.5	3	1	0	3	3	3	0	NAD(P)H-binding
RmlD_sub_bind	PF04321.17	gi|408404325|ref|YP_006862308.1|	-	0.59	9.2	5.0	0.69	9.0	0.1	2.9	3	0	0	3	3	3	0	RmlD	substrate	binding	domain
AIRC	PF00731.20	gi|408404328|ref|YP_006862311.1|	-	6.9e-67	223.6	1.0	7.9e-67	223.4	1.0	1.0	1	0	0	1	1	1	1	AIR	carboxylase
ATP-grasp	PF02222.22	gi|408404329|ref|YP_006862312.1|	-	1.1e-58	197.6	0.0	1.6e-58	197.1	0.0	1.2	1	0	0	1	1	1	1	ATP-grasp	domain
PurK_C	PF17769.1	gi|408404329|ref|YP_006862312.1|	-	3.1e-18	65.2	0.2	5.8e-18	64.3	0.2	1.5	1	0	0	1	1	1	1	Phosphoribosylaminoimidazole	carboxylase	C-terminal	domain
Dala_Dala_lig_C	PF07478.13	gi|408404329|ref|YP_006862312.1|	-	6.3e-09	35.7	0.0	2.5e-08	33.7	0.0	1.9	1	1	0	1	1	1	1	D-ala	D-ala	ligase	C-terminus
RimK	PF08443.11	gi|408404329|ref|YP_006862312.1|	-	0.0001	21.9	0.0	0.00024	20.8	0.0	1.7	1	1	0	1	1	1	1	RimK-like	ATP-grasp	domain
CPSase_L_D2	PF02786.17	gi|408404329|ref|YP_006862312.1|	-	0.00018	21.1	0.0	0.00032	20.3	0.0	1.4	1	0	0	1	1	1	1	Carbamoyl-phosphate	synthase	L	chain,	ATP	binding	domain
ATP-grasp_3	PF02655.14	gi|408404329|ref|YP_006862312.1|	-	0.00018	21.6	0.0	0.00043	20.4	0.0	1.6	2	0	0	2	2	2	1	ATP-grasp	domain
LAL_C2	PF18603.1	gi|408404329|ref|YP_006862312.1|	-	0.00077	19.6	0.6	0.0022	18.1	0.6	1.8	1	1	0	1	1	1	1	L-amino	acid	ligase	C-terminal	domain	2
ATPgrasp_ST	PF14397.6	gi|408404329|ref|YP_006862312.1|	-	0.024	13.9	0.0	2.6	7.2	0.0	2.2	2	0	0	2	2	2	0	Sugar-transfer	associated	ATP-grasp
ATP-grasp_5	PF13549.6	gi|408404329|ref|YP_006862312.1|	-	0.054	13.0	0.0	0.12	11.8	0.0	1.6	1	0	0	1	1	1	0	ATP-grasp	domain
SAICAR_synt	PF01259.18	gi|408404330|ref|YP_006862313.1|	-	1.3e-69	234.6	0.0	1.6e-69	234.3	0.0	1.0	1	0	0	1	1	1	1	SAICAR	synthetase
HTH_20	PF12840.7	gi|408404331|ref|YP_006862314.1|	-	3.7e-11	42.9	0.0	9.2e-11	41.7	0.0	1.6	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_5	PF01022.20	gi|408404331|ref|YP_006862314.1|	-	2.8e-08	33.5	1.5	1.1e-07	31.6	0.3	2.5	2	1	0	2	2	2	1	Bacterial	regulatory	protein,	arsR	family
HTH_12	PF08461.10	gi|408404331|ref|YP_006862314.1|	-	2.5e-06	27.3	0.1	5.8e-06	26.2	0.1	1.6	1	0	0	1	1	1	1	Ribonuclease	R	winged-helix	domain
HTH_11	PF08279.12	gi|408404331|ref|YP_006862314.1|	-	0.00019	21.3	0.7	0.00077	19.4	0.7	2.0	1	1	0	1	1	1	1	HTH	domain
PadR	PF03551.14	gi|408404331|ref|YP_006862314.1|	-	0.00022	21.1	0.1	0.00056	19.8	0.1	1.7	2	0	0	2	2	2	1	Transcriptional	regulator	PadR-like	family
Type2_restr_D3	PF16902.5	gi|408404331|ref|YP_006862314.1|	-	0.0063	16.4	0.2	0.025	14.5	0.2	1.9	2	0	0	2	2	2	1	Type-2	restriction	enzyme	D3	domain
TFIIE_alpha	PF02002.17	gi|408404331|ref|YP_006862314.1|	-	0.0075	16.1	0.1	0.016	15.1	0.1	1.6	1	1	0	1	1	1	1	TFIIE	alpha	subunit
HTH_24	PF13412.6	gi|408404331|ref|YP_006862314.1|	-	0.021	14.4	0.2	0.51	9.9	0.2	2.7	1	1	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
FUR	PF01475.19	gi|408404331|ref|YP_006862314.1|	-	0.031	14.4	0.1	0.053	13.7	0.1	1.5	1	1	0	1	1	1	0	Ferric	uptake	regulator	family
TrmB	PF01978.19	gi|408404331|ref|YP_006862314.1|	-	0.044	13.7	0.0	0.23	11.4	0.0	2.1	2	1	0	2	2	2	0	Sugar-specific	transcriptional	regulator	TrmB
LexA_DNA_bind	PF01726.16	gi|408404331|ref|YP_006862314.1|	-	0.094	12.5	0.7	0.35	10.7	0.1	2.3	3	0	0	3	3	3	0	LexA	DNA	binding	domain
DprA_WH	PF17782.1	gi|408404331|ref|YP_006862314.1|	-	0.1	12.8	0.0	0.24	11.5	0.0	1.6	1	0	0	1	1	1	0	DprA	winged	helix	domain
OGFr_N	PF04664.13	gi|408404331|ref|YP_006862314.1|	-	0.13	11.8	0.0	0.2	11.2	0.0	1.3	1	0	0	1	1	1	0	Opioid	growth	factor	receptor	(OGFr)	conserved	region
HTH_38	PF13936.6	gi|408404331|ref|YP_006862314.1|	-	0.51	10.1	1.6	1.5	8.7	0.2	2.3	2	1	0	2	2	2	0	Helix-turn-helix	domain
DUF371	PF04027.13	gi|408404332|ref|YP_006862315.1|	-	4.3e-46	156.2	0.3	4.7e-46	156.1	0.3	1.0	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF371)
Proteasome	PF00227.26	gi|408404333|ref|YP_006862316.1|	-	6.7e-56	188.8	0.5	7.8e-56	188.6	0.5	1.1	1	0	0	1	1	1	1	Proteasome	subunit
Pyr_redox_2	PF07992.14	gi|408404333|ref|YP_006862316.1|	-	0.045	13.0	0.1	0.071	12.3	0.1	1.3	1	0	0	1	1	1	0	Pyridine	nucleotide-disulphide	oxidoreductase
Redoxin	PF08534.10	gi|408404334|ref|YP_006862317.1|	-	1.4e-06	28.1	0.0	0.00037	20.2	0.0	2.3	2	1	0	2	2	2	2	Redoxin
AhpC-TSA	PF00578.21	gi|408404334|ref|YP_006862317.1|	-	2.2e-05	24.4	0.0	0.00017	21.5	0.0	2.1	1	1	0	1	1	1	1	AhpC/TSA	family
GSHPx	PF00255.19	gi|408404334|ref|YP_006862317.1|	-	0.0015	18.1	0.0	0.0027	17.3	0.0	1.4	1	0	0	1	1	1	1	Glutathione	peroxidase
TMP_2	PF06791.13	gi|408404334|ref|YP_006862317.1|	-	0.12	12.0	0.0	0.19	11.4	0.0	1.2	1	0	0	1	1	1	0	Prophage	tail	length	tape	measure	protein
Methyltrn_RNA_3	PF02598.17	gi|408404335|ref|YP_006862318.1|	-	2.7e-56	191.2	0.0	3e-56	191.0	0.0	1.0	1	0	0	1	1	1	1	Putative	RNA	methyltransferase
SPOUT_MTase_2	PF14419.6	gi|408404335|ref|YP_006862318.1|	-	0.014	14.8	0.0	0.026	13.9	0.0	1.5	1	0	0	1	1	1	0	AF2226-like	SPOUT	RNA	Methylase	fused	to	THUMP
SIMPL	PF04402.14	gi|408404336|ref|YP_006862319.1|	-	1.6e-43	149.5	0.8	1.9e-43	149.3	0.8	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF541)
Ribosomal_L3	PF00297.22	gi|408404337|ref|YP_006862320.1|	-	1.1e-71	241.8	2.4	1.2e-69	235.1	2.4	2.0	1	1	0	1	1	1	1	Ribosomal	protein	L3
Ribosomal_L4	PF00573.22	gi|408404338|ref|YP_006862321.1|	-	4.7e-38	130.8	0.2	5.4e-38	130.6	0.2	1.0	1	0	0	1	1	1	1	Ribosomal	protein	L4/L1	family
Ribosomal_L23	PF00276.20	gi|408404339|ref|YP_006862322.1|	-	4.3e-12	46.2	1.0	6.6e-12	45.6	1.0	1.3	1	0	0	1	1	1	1	Ribosomal	protein	L23
Ribosomal_S19	PF00203.21	gi|408404340|ref|YP_006862323.1|	-	3.4e-30	103.7	0.3	4.3e-30	103.4	0.3	1.2	1	0	0	1	1	1	1	Ribosomal	protein	S19
Ribosomal_L30_N	PF08079.12	gi|408404340|ref|YP_006862323.1|	-	0.0041	17.4	0.3	0.0071	16.6	0.3	1.4	1	0	0	1	1	1	1	Ribosomal	L30	N-terminal	domain
Ribosomal_L22	PF00237.19	gi|408404341|ref|YP_006862324.1|	-	8.6e-26	90.2	0.2	1.1e-25	89.9	0.2	1.1	1	0	0	1	1	1	1	Ribosomal	protein	L22p/L17e
Ribosomal_S3_C	PF00189.20	gi|408404342|ref|YP_006862325.1|	-	3e-20	72.5	1.3	5.9e-20	71.6	1.1	1.6	2	0	0	2	2	2	1	Ribosomal	protein	S3,	C-terminal	domain
KH_2	PF07650.17	gi|408404342|ref|YP_006862325.1|	-	6.9e-14	51.4	0.0	1.1e-13	50.8	0.0	1.3	1	0	0	1	1	1	1	KH	domain
Ribosomal_L29	PF00831.23	gi|408404343|ref|YP_006862326.1|	-	2e-16	59.7	4.4	2.6e-16	59.3	4.4	1.2	1	0	0	1	1	1	1	Ribosomal	L29	protein
FAM167	PF11652.8	gi|408404343|ref|YP_006862326.1|	-	0.0024	18.3	1.2	0.0031	18.0	1.2	1.3	1	1	0	1	1	1	1	FAM167
DUF5617	PF18493.1	gi|408404343|ref|YP_006862326.1|	-	0.015	15.4	0.4	0.023	14.8	0.3	1.4	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF5617)
XhlA	PF10779.9	gi|408404343|ref|YP_006862326.1|	-	0.029	14.6	2.3	0.043	14.0	2.3	1.4	1	1	0	1	1	1	0	Haemolysin	XhlA
UPF0086	PF01868.16	gi|408404344|ref|YP_006862327.1|	-	2.2e-17	62.7	0.1	2.5e-17	62.5	0.1	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	UPF0086
Ribosomal_S17	PF00366.20	gi|408404345|ref|YP_006862328.1|	-	2.7e-22	78.7	0.2	3.4e-22	78.3	0.2	1.1	1	0	0	1	1	1	1	Ribosomal	protein	S17
Ribosomal_S17_N	PF16205.5	gi|408404345|ref|YP_006862328.1|	-	0.0096	16.3	0.0	0.017	15.5	0.0	1.5	1	0	0	1	1	1	1	Ribosomal_S17	N-terminal
Ribosomal_L14	PF00238.19	gi|408404346|ref|YP_006862329.1|	-	9.9e-32	109.6	0.2	1.3e-31	109.3	0.2	1.1	1	0	0	1	1	1	1	Ribosomal	protein	L14p/L23e
Ribosomal_L26	PF16906.5	gi|408404347|ref|YP_006862330.1|	-	3.9e-18	65.7	0.2	8.3e-18	64.6	0.2	1.5	1	0	0	1	1	1	1	Ribosomal	proteins	L26	eukaryotic,	L24P	archaeal
KOW	PF00467.29	gi|408404347|ref|YP_006862330.1|	-	2.7e-06	27.1	2.9	7.1e-06	25.8	2.9	1.7	1	0	0	1	1	1	1	KOW	motif
Ribosomal_S4e	PF00900.20	gi|408404348|ref|YP_006862331.1|	-	2.2e-18	65.9	0.8	4.4e-18	64.9	0.3	1.8	2	0	0	2	2	2	1	Ribosomal	family	S4e
RS4NT	PF08071.12	gi|408404348|ref|YP_006862331.1|	-	1.3e-09	38.0	1.4	2e-09	37.4	1.4	1.3	1	0	0	1	1	1	1	RS4NT	(NUC023)	domain
S4	PF01479.25	gi|408404348|ref|YP_006862331.1|	-	9.6e-09	34.8	0.3	3.6e-08	33.0	0.2	2.0	2	0	0	2	2	2	1	S4	domain
KOW	PF00467.29	gi|408404348|ref|YP_006862331.1|	-	0.017	15.1	0.7	0.069	13.1	0.1	2.5	2	0	0	2	2	2	0	KOW	motif
Ribosomal_L5_C	PF00673.21	gi|408404349|ref|YP_006862332.1|	-	3.7e-23	81.5	0.0	6.6e-23	80.7	0.0	1.5	1	0	0	1	1	1	1	ribosomal	L5P	family	C-terminus
Ribosomal_L5	PF00281.19	gi|408404349|ref|YP_006862332.1|	-	1.6e-15	57.2	0.2	3.5e-15	56.1	0.2	1.6	1	0	0	1	1	1	1	Ribosomal	protein	L5
Ribosomal_S14	PF00253.21	gi|408404350|ref|YP_006862333.1|	-	2.2e-10	40.1	2.9	3.3e-10	39.6	2.9	1.3	1	1	0	1	1	1	1	Ribosomal	protein	S14p/S29e
Ribosomal_S8	PF00410.19	gi|408404351|ref|YP_006862334.1|	-	3.1e-23	82.1	0.0	3.8e-23	81.8	0.0	1.1	1	0	0	1	1	1	1	Ribosomal	protein	S8
Ribosomal_L6	PF00347.23	gi|408404352|ref|YP_006862335.1|	-	9.7e-17	61.4	10.2	3.8e-09	37.1	2.3	2.1	2	0	0	2	2	2	2	Ribosomal	protein	L6
DUF2067	PF09840.9	gi|408404352|ref|YP_006862335.1|	-	0.056	13.0	0.7	0.15	11.6	0.2	1.9	1	1	1	2	2	2	0	Uncharacterized	protein	conserved	in	archaea	(DUF2067)
LexA_DNA_bind	PF01726.16	gi|408404353|ref|YP_006862336.1|	-	0.043	13.6	0.0	0.073	12.9	0.0	1.3	1	0	0	1	1	1	0	LexA	DNA	binding	domain
HTH_20	PF12840.7	gi|408404353|ref|YP_006862336.1|	-	0.1	12.7	0.0	0.25	11.4	0.0	1.7	2	0	0	2	2	2	0	Helix-turn-helix	domain
DUF35_N	PF12172.8	gi|408404355|ref|YP_006862338.1|	-	1.2e-06	28.2	1.4	1.2e-06	28.2	1.4	1.5	2	0	0	2	2	2	1	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
DZR	PF12773.7	gi|408404355|ref|YP_006862338.1|	-	0.031	14.3	1.2	0.041	13.9	0.6	1.5	2	0	0	2	2	2	0	Double	zinc	ribbon
Zn_Tnp_IS1595	PF12760.7	gi|408404355|ref|YP_006862338.1|	-	0.066	13.2	0.4	0.066	13.2	0.4	2.2	2	1	1	3	3	3	0	Transposase	zinc-ribbon	domain
zf-ISL3	PF14690.6	gi|408404355|ref|YP_006862338.1|	-	0.11	13.2	2.9	1.8	9.3	0.0	2.5	3	0	0	3	3	3	0	zinc-finger	of	transposase	IS204/IS1001/IS1096/IS1165
Thiolase_N	PF00108.23	gi|408404356|ref|YP_006862339.1|	-	3.2e-17	62.7	2.2	1.6e-15	57.2	2.2	2.5	1	1	0	1	1	1	1	Thiolase,	N-terminal	domain
Thiolase_C	PF02803.18	gi|408404356|ref|YP_006862339.1|	-	5e-11	42.3	1.0	1.5e-10	40.8	1.0	1.8	1	0	0	1	1	1	1	Thiolase,	C-terminal	domain
ACP_syn_III	PF08545.10	gi|408404356|ref|YP_006862339.1|	-	6.1e-05	22.8	0.2	0.0053	16.6	0.2	2.5	2	0	0	2	2	2	1	3-Oxoacyl-[acyl-carrier-protein	(ACP)]	synthase	III
ketoacyl-synt	PF00109.26	gi|408404356|ref|YP_006862339.1|	-	0.00056	19.6	0.2	0.0015	18.2	0.2	1.7	1	0	0	1	1	1	1	Beta-ketoacyl	synthase,	N-terminal	domain
Ketoacyl-synt_C	PF02801.22	gi|408404356|ref|YP_006862339.1|	-	1.3	9.0	6.1	1.4	9.0	0.1	3.1	2	1	1	3	3	3	0	Beta-ketoacyl	synthase,	C-terminal	domain
Bac_luciferase	PF00296.20	gi|408404357|ref|YP_006862340.1|	-	3.7e-64	217.1	0.0	4.5e-64	216.9	0.0	1.0	1	0	0	1	1	1	1	Luciferase-like	monooxygenase
NTP_transferase	PF00483.23	gi|408404358|ref|YP_006862341.1|	-	2.1e-34	119.2	0.0	5.6e-34	117.8	0.0	1.6	1	1	0	1	1	1	1	Nucleotidyl	transferase
NTP_transf_3	PF12804.7	gi|408404358|ref|YP_006862341.1|	-	2.7e-09	37.6	0.0	4.1e-09	37.0	0.0	1.2	1	0	0	1	1	1	1	MobA-like	NTP	transferase	domain
IspD	PF01128.19	gi|408404358|ref|YP_006862341.1|	-	0.02	14.6	0.0	0.031	14.0	0.0	1.2	1	0	0	1	1	1	0	2-C-methyl-D-erythritol	4-phosphate	cytidylyltransferase
SAM_MT	PF04445.13	gi|408404359|ref|YP_006862342.1|	-	0.12	11.8	0.3	0.17	11.2	0.3	1.2	1	0	0	1	1	1	0	Putative	SAM-dependent	methyltransferase
DUF3995	PF13160.6	gi|408404359|ref|YP_006862342.1|	-	0.76	10.1	8.6	0.18	12.1	4.2	1.8	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF3995)
DUF2157	PF09925.9	gi|408404359|ref|YP_006862342.1|	-	3.9	7.3	9.7	52	3.6	9.8	2.5	1	1	0	1	1	1	0	Predicted	membrane	protein	(DUF2157)
Tetraspanin	PF00335.20	gi|408404359|ref|YP_006862342.1|	-	6.7	6.4	5.3	4.3	7.0	2.6	1.9	1	1	1	2	2	2	0	Tetraspanin	family
DUF659	PF04937.15	gi|408404360|ref|YP_006862343.1|	-	0.039	13.8	0.0	1.1	9.1	0.0	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF	659)
AAA_26	PF13500.6	gi|408404361|ref|YP_006862344.1|	-	6e-47	160.0	0.0	7.1e-47	159.8	0.0	1.0	1	0	0	1	1	1	1	AAA	domain
CbiA	PF01656.23	gi|408404361|ref|YP_006862344.1|	-	4.1e-10	39.8	0.0	9.6e-10	38.6	0.0	1.6	1	1	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
ParA	PF10609.9	gi|408404361|ref|YP_006862344.1|	-	0.0002	20.9	3.3	0.12	11.8	0.6	2.3	2	0	0	2	2	2	2	NUBPL	iron-transfer	P-loop	NTPase
ArsA_ATPase	PF02374.15	gi|408404361|ref|YP_006862344.1|	-	0.0023	17.2	0.5	0.091	11.9	0.2	2.2	2	0	0	2	2	2	1	Anion-transporting	ATPase
CBP_BcsQ	PF06564.12	gi|408404361|ref|YP_006862344.1|	-	0.012	15.1	0.0	0.018	14.5	0.0	1.3	1	0	0	1	1	1	0	Cellulose	biosynthesis	protein	BcsQ
MobB	PF03205.14	gi|408404361|ref|YP_006862344.1|	-	0.03	14.2	0.1	0.2	11.5	0.1	2.1	1	1	0	1	1	1	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
DUF1611	PF07755.11	gi|408404361|ref|YP_006862344.1|	-	0.038	13.3	0.7	2.2	7.5	0.4	2.4	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF1611_C)	P-loop	domain
ResIII	PF04851.15	gi|408404361|ref|YP_006862344.1|	-	0.15	12.0	0.2	0.26	11.3	0.2	1.4	1	0	0	1	1	1	0	Type	III	restriction	enzyme,	res	subunit
Aminotran_3	PF00202.21	gi|408404362|ref|YP_006862345.1|	-	1.8e-94	316.7	0.0	2.1e-94	316.5	0.0	1.0	1	0	0	1	1	1	1	Aminotransferase	class-III
Beta_elim_lyase	PF01212.21	gi|408404362|ref|YP_006862345.1|	-	0.0025	17.2	0.0	0.0051	16.1	0.0	1.5	1	0	0	1	1	1	1	Beta-eliminating	lyase
FAD_binding_2	PF00890.24	gi|408404362|ref|YP_006862345.1|	-	0.016	14.3	0.0	0.031	13.4	0.0	1.4	1	0	0	1	1	1	0	FAD	binding	domain
WcbI	PF18588.1	gi|408404362|ref|YP_006862345.1|	-	0.02	14.5	0.0	0.038	13.6	0.0	1.5	1	0	0	1	1	1	0	Polysaccharide	biosynthesis	enzyme	WcbI
Resolvase	PF00239.21	gi|408404363|ref|YP_006862346.1|	-	6.4e-35	120.4	0.1	1e-34	119.7	0.1	1.3	1	0	0	1	1	1	1	Resolvase,	N	terminal	domain
HTH_7	PF02796.15	gi|408404363|ref|YP_006862346.1|	-	2.3e-08	34.0	0.1	5.2e-08	32.8	0.1	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain	of	resolvase
HTH_38	PF13936.6	gi|408404363|ref|YP_006862346.1|	-	8.2e-06	25.5	0.1	2.2e-05	24.1	0.0	1.8	1	1	0	1	1	1	1	Helix-turn-helix	domain
HTH_23	PF13384.6	gi|408404363|ref|YP_006862346.1|	-	4.6e-05	23.1	0.8	0.00013	21.7	0.0	2.1	2	0	0	2	2	2	1	Homeodomain-like	domain
CENP-B_N	PF04218.13	gi|408404363|ref|YP_006862346.1|	-	0.00025	20.6	0.0	0.0012	18.4	0.0	2.2	2	0	0	2	2	2	1	CENP-B	N-terminal	DNA-binding	domain
HTH_22	PF13309.6	gi|408404363|ref|YP_006862346.1|	-	0.004	17.2	0.0	0.016	15.3	0.0	2.0	2	0	0	2	2	2	1	HTH	domain
HTH_50	PF18024.1	gi|408404363|ref|YP_006862346.1|	-	0.0048	16.5	0.4	0.012	15.1	0.1	1.8	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_11	PF08279.12	gi|408404363|ref|YP_006862346.1|	-	0.0053	16.7	0.4	0.013	15.4	0.4	1.7	1	0	0	1	1	1	1	HTH	domain
HTH_28	PF13518.6	gi|408404363|ref|YP_006862346.1|	-	0.0088	16.2	0.1	0.023	14.8	0.0	1.7	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_29	PF13551.6	gi|408404363|ref|YP_006862346.1|	-	0.013	15.5	0.1	0.084	12.9	0.0	2.2	1	1	1	2	2	2	0	Winged	helix-turn	helix
HTH_30	PF13556.6	gi|408404363|ref|YP_006862346.1|	-	0.018	14.8	0.1	0.033	14.0	0.1	1.4	1	0	0	1	1	1	0	PucR	C-terminal	helix-turn-helix	domain
TetR_N	PF00440.23	gi|408404363|ref|YP_006862346.1|	-	0.029	14.2	0.0	0.22	11.3	0.0	2.1	2	0	0	2	2	2	0	Bacterial	regulatory	proteins,	tetR	family
HTH_10	PF04967.12	gi|408404363|ref|YP_006862346.1|	-	0.029	14.1	0.1	0.066	13.0	0.1	1.5	1	0	0	1	1	1	0	HTH	DNA	binding	domain
HTH_Tnp_1_2	PF13022.6	gi|408404363|ref|YP_006862346.1|	-	0.048	13.8	0.2	0.12	12.5	0.1	1.7	2	0	0	2	2	2	0	Helix-turn-helix	of	insertion	element	transposase
Trp_repressor	PF01371.19	gi|408404363|ref|YP_006862346.1|	-	0.072	13.2	0.4	0.2	11.8	0.1	2.0	2	0	0	2	2	2	0	Trp	repressor	protein
HTH_36	PF13730.6	gi|408404363|ref|YP_006862346.1|	-	0.077	13.0	1.1	0.16	11.9	0.2	2.0	2	0	0	2	2	2	0	Helix-turn-helix	domain
TrmB	PF01978.19	gi|408404363|ref|YP_006862346.1|	-	0.1	12.5	0.1	0.19	11.7	0.1	1.5	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
HTH_8	PF02954.19	gi|408404363|ref|YP_006862346.1|	-	0.12	12.2	0.3	0.12	12.2	0.3	2.0	2	0	0	2	2	2	0	Bacterial	regulatory	protein,	Fis	family
BATS	PF06968.13	gi|408404364|ref|YP_006862347.1|	-	4.4e-16	58.8	0.0	1.5e-15	57.1	0.0	1.9	2	0	0	2	2	2	1	Biotin	and	Thiamin	Synthesis	associated	domain
Radical_SAM	PF04055.21	gi|408404364|ref|YP_006862347.1|	-	5.4e-16	59.4	0.1	1.1e-15	58.4	0.1	1.5	1	0	0	1	1	1	1	Radical	SAM	superfamily
DeoC	PF01791.9	gi|408404364|ref|YP_006862347.1|	-	0.014	15.0	0.0	1.3	8.6	0.0	2.4	2	0	0	2	2	2	0	DeoC/LacD	family	aldolase
His_biosynth	PF00977.21	gi|408404364|ref|YP_006862347.1|	-	0.13	11.7	0.0	0.27	10.6	0.0	1.6	1	0	0	1	1	1	0	Histidine	biosynthesis	protein
Aminotran_1_2	PF00155.21	gi|408404365|ref|YP_006862348.1|	-	1.1e-63	215.7	0.0	1.2e-63	215.5	0.0	1.0	1	0	0	1	1	1	1	Aminotransferase	class	I	and	II
Aminotran_5	PF00266.19	gi|408404365|ref|YP_006862348.1|	-	3.3e-06	26.3	0.0	5.2e-06	25.7	0.0	1.4	1	0	0	1	1	1	1	Aminotransferase	class-V
Cys_Met_Meta_PP	PF01053.20	gi|408404365|ref|YP_006862348.1|	-	3e-05	22.7	0.0	4.3e-05	22.2	0.0	1.2	1	0	0	1	1	1	1	Cys/Met	metabolism	PLP-dependent	enzyme
Microvir_H	PF04687.12	gi|408404367|ref|YP_006862350.1|	-	0.017	14.5	0.3	0.027	13.8	0.3	1.3	1	0	0	1	1	1	0	Microvirus	H	protein	(pilot	protein)
Ins_allergen_rp	PF06757.13	gi|408404367|ref|YP_006862350.1|	-	0.024	14.6	0.1	0.036	14.0	0.1	1.3	1	0	0	1	1	1	0	Insect	allergen	related	repeat,	nitrile-specifier	detoxification
DASH_Duo1	PF08651.10	gi|408404367|ref|YP_006862350.1|	-	0.057	13.2	1.6	0.1	12.4	0.3	2.1	2	0	0	2	2	2	0	DASH	complex	subunit	Duo1
DUF2441	PF10386.9	gi|408404367|ref|YP_006862350.1|	-	0.084	12.9	0.2	0.38	10.7	0.0	1.9	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2441)
Snf7	PF03357.21	gi|408404367|ref|YP_006862350.1|	-	0.32	10.6	6.1	0.71	9.5	6.1	1.7	1	1	0	1	1	1	0	Snf7
OprD	PF03573.13	gi|408404368|ref|YP_006862351.1|	-	0.043	12.9	0.2	0.043	12.9	0.2	1.0	1	0	0	1	1	1	0	outer	membrane	porin,	OprD	family
PALP	PF00291.25	gi|408404369|ref|YP_006862352.1|	-	1.7e-50	172.1	0.0	2.2e-50	171.8	0.0	1.1	1	0	0	1	1	1	1	Pyridoxal-phosphate	dependent	enzyme
PK_C	PF02887.16	gi|408404369|ref|YP_006862352.1|	-	0.37	11.0	2.1	2	8.7	1.1	2.3	2	1	0	2	2	2	0	Pyruvate	kinase,	alpha/beta	domain
Chorismate_bind	PF00425.18	gi|408404370|ref|YP_006862353.1|	-	7e-95	317.5	0.0	6.6e-94	314.3	0.0	2.1	2	1	0	2	2	2	1	chorismate	binding	enzyme
Anth_synt_I_N	PF04715.13	gi|408404370|ref|YP_006862353.1|	-	1.9e-24	86.5	0.1	5.2e-22	78.6	0.1	2.6	2	0	0	2	2	2	2	Anthranilate	synthase	component	I,	N	terminal	region
ILVD_EDD	PF00920.21	gi|408404371|ref|YP_006862354.1|	-	2.6e-215	715.9	7.0	2.9e-215	715.8	7.0	1.0	1	0	0	1	1	1	1	Dehydratase	family
Elf1	PF05129.13	gi|408404372|ref|YP_006862355.1|	-	0.0048	16.9	0.2	0.0055	16.7	0.2	1.2	1	0	0	1	1	1	1	Transcription	elongation	factor	Elf1	like
Mu-like_Com	PF10122.9	gi|408404372|ref|YP_006862355.1|	-	0.021	14.3	0.3	1.6	8.3	0.0	2.1	1	1	1	2	2	2	0	Mu-like	prophage	protein	Com
HypA	PF01155.19	gi|408404372|ref|YP_006862355.1|	-	0.036	14.1	0.1	0.039	14.0	0.1	1.1	1	0	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
VP_N-CPKC	PF11475.8	gi|408404372|ref|YP_006862355.1|	-	0.082	12.8	1.0	0.13	12.2	0.1	1.8	1	1	1	2	2	2	0	Virion	protein	N	terminal	domain
zinc_ribbon_5	PF13719.6	gi|408404372|ref|YP_006862355.1|	-	0.59	9.9	4.5	2.6	7.9	0.1	2.1	1	1	1	2	2	2	0	zinc-ribbon	domain
HIT	PF01230.23	gi|408404373|ref|YP_006862356.1|	-	3.6e-23	82.1	0.3	5.1e-23	81.6	0.3	1.2	1	0	0	1	1	1	1	HIT	domain
DcpS_C	PF11969.8	gi|408404373|ref|YP_006862356.1|	-	3.3e-15	56.6	0.0	4.6e-15	56.1	0.0	1.2	1	0	0	1	1	1	1	Scavenger	mRNA	decapping	enzyme	C-term	binding
CwfJ_C_1	PF04677.15	gi|408404373|ref|YP_006862356.1|	-	0.0064	16.4	0.4	0.013	15.4	0.4	1.5	1	1	0	1	1	1	1	Protein	similar	to	CwfJ	C-terminus	1
DUF596	PF04591.12	gi|408404374|ref|YP_006862357.1|	-	0.068	13.3	0.1	1	9.6	0.0	2.3	3	0	0	3	3	3	0	Protein	of	unknown	function,	DUF596
aGPT-Pplase3	PF18746.1	gi|408404376|ref|YP_006862359.1|	-	0.1	11.9	0.0	0.14	11.5	0.0	1.2	1	0	0	1	1	1	0	Alpha-glutamyl/putrescinyl	thymine	pyrophosphorylase	clade	3
RB_B	PF01857.20	gi|408404376|ref|YP_006862359.1|	-	0.12	12.4	0.1	0.22	11.6	0.1	1.4	1	0	0	1	1	1	0	Retinoblastoma-associated	protein	B	domain
tRNA_int_endo	PF01974.17	gi|408404377|ref|YP_006862360.1|	-	8.6e-26	89.8	0.0	1.3e-25	89.2	0.0	1.3	1	0	0	1	1	1	1	tRNA	intron	endonuclease,	catalytic	C-terminal	domain
tRNA_int_endo_N	PF02778.14	gi|408404377|ref|YP_006862360.1|	-	4e-17	61.7	0.0	6e-17	61.1	0.0	1.3	1	0	0	1	1	1	1	tRNA	intron	endonuclease,	N-terminal	domain
PhoU_div	PF01865.16	gi|408404378|ref|YP_006862361.1|	-	8.6e-19	67.7	5.7	1e-18	67.5	5.7	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF47
PhoU	PF01895.19	gi|408404378|ref|YP_006862361.1|	-	0.00029	21.2	8.2	0.081	13.4	0.2	2.6	2	1	0	2	2	2	2	PhoU	domain
COG2	PF06148.11	gi|408404378|ref|YP_006862361.1|	-	0.054	13.6	2.7	0.16	12.1	0.3	2.4	2	1	0	2	2	2	0	COG	(conserved	oligomeric	Golgi)	complex	component,	COG2
FAM184	PF15665.5	gi|408404378|ref|YP_006862361.1|	-	0.09	12.6	1.5	0.47	10.2	0.5	2.0	2	0	0	2	2	2	0	Family	with	sequence	similarity	184,	A	and	B
DUF2203	PF09969.9	gi|408404378|ref|YP_006862361.1|	-	0.15	12.8	2.8	0.28	11.9	1.2	2.0	2	0	0	2	2	2	0	Uncharacterized	conserved	protein	(DUF2203)
zf-C4H2	PF10146.9	gi|408404378|ref|YP_006862361.1|	-	0.16	12.3	0.8	5.9	7.1	0.0	2.2	2	0	0	2	2	2	0	Zinc	finger-containing	protein
ING	PF12998.7	gi|408404378|ref|YP_006862361.1|	-	0.5	11.0	4.1	3.7	8.2	0.3	2.7	2	1	0	2	2	2	0	Inhibitor	of	growth	proteins	N-terminal	histone-binding
DUF1664	PF07889.12	gi|408404378|ref|YP_006862361.1|	-	2.2	8.4	5.2	4.2	7.4	0.5	2.6	1	1	0	2	2	2	0	Protein	of	unknown	function	(DUF1664)
Polysacc_deac_1	PF01522.21	gi|408404379|ref|YP_006862362.1|	-	1.5e-12	47.5	0.0	3.1e-12	46.5	0.0	1.5	1	0	0	1	1	1	1	Polysaccharide	deacetylase
DUF2334	PF10096.9	gi|408404379|ref|YP_006862362.1|	-	5.6e-08	32.7	0.2	1e-07	31.8	0.1	1.5	1	1	0	1	1	1	1	Uncharacterized	protein	conserved	in	bacteria	(DUF2334)
Glyco_hydro_57	PF03065.15	gi|408404379|ref|YP_006862362.1|	-	0.0023	17.2	0.2	0.046	12.9	0.2	2.2	1	1	0	1	1	1	1	Glycosyl	hydrolase	family	57
TIR-like	PF10137.9	gi|408404379|ref|YP_006862362.1|	-	0.031	14.2	0.1	0.059	13.3	0.1	1.4	1	0	0	1	1	1	0	Predicted	nucleotide-binding	protein	containing	TIR-like	domain
Exo_endo_phos_2	PF14529.6	gi|408404379|ref|YP_006862362.1|	-	0.063	13.1	0.0	0.22	11.4	0.0	1.8	1	1	0	1	1	1	0	Endonuclease-reverse	transcriptase
CCDC32	PF14989.6	gi|408404379|ref|YP_006862362.1|	-	0.12	12.4	0.0	0.2	11.6	0.0	1.3	1	0	0	1	1	1	0	Coiled-coil	domain	containing	32
ALGX	PF16822.5	gi|408404379|ref|YP_006862362.1|	-	0.13	11.9	0.0	0.24	11.0	0.0	1.3	1	0	0	1	1	1	0	SGNH	hydrolase-like	domain,	acetyltransferase	AlgX
Radical_SAM	PF04055.21	gi|408404380|ref|YP_006862363.1|	-	3.8e-18	66.4	0.2	2.6e-17	63.7	0.1	2.0	2	0	0	2	2	2	1	Radical	SAM	superfamily
RNase_P_Rpp14	PF01900.19	gi|408404381|ref|YP_006862364.1|	-	4.5e-06	26.8	0.1	8e-06	26.0	0.1	1.4	1	1	0	1	1	1	1	Rpp14/Pop5	family
RNA_binding	PF01877.17	gi|408404383|ref|YP_006862366.1|	-	1.2e-28	99.7	0.1	1.6e-28	99.4	0.1	1.0	1	0	0	1	1	1	1	RNA	binding
Phage_CP76	PF06892.11	gi|408404383|ref|YP_006862366.1|	-	0.021	14.4	0.0	0.024	14.2	0.0	1.1	1	0	0	1	1	1	0	Phage	regulatory	protein	CII	(CP76)
Ribosomal_S3Ae	PF01015.18	gi|408404384|ref|YP_006862367.1|	-	2.2e-60	203.7	3.4	2.6e-60	203.5	3.4	1.0	1	0	0	1	1	1	1	Ribosomal	S3Ae	family
tRNA-synt_2b	PF00587.25	gi|408404385|ref|YP_006862368.1|	-	5.7e-39	133.9	0.2	1e-38	133.1	0.2	1.4	1	0	0	1	1	1	1	tRNA	synthetase	class	II	core	domain	(G,	H,	P,	S	and	T)
Seryl_tRNA_N	PF02403.22	gi|408404385|ref|YP_006862368.1|	-	3.5e-25	88.3	7.2	7.5e-25	87.3	7.2	1.6	1	0	0	1	1	1	1	Seryl-tRNA	synthetase	N-terminal	domain
UPF0228	PF05727.11	gi|408404385|ref|YP_006862368.1|	-	0.049	13.5	0.2	0.22	11.3	0.0	2.2	3	0	0	3	3	3	0	Uncharacterised	protein	family	(UPF0228)
Pcc1	PF09341.10	gi|408404386|ref|YP_006862369.1|	-	0.00065	19.8	0.0	0.00082	19.5	0.0	1.2	1	0	0	1	1	1	1	Transcription	factor	Pcc1
DHHA1	PF02272.19	gi|408404387|ref|YP_006862370.1|	-	1.2e-07	32.2	0.1	3.5e-07	30.7	0.0	1.9	2	0	0	2	2	2	1	DHHA1	domain
DHH	PF01368.20	gi|408404387|ref|YP_006862370.1|	-	0.00051	20.2	0.1	0.0012	19.0	0.1	1.7	1	0	0	1	1	1	1	DHH	family
NTP_transf_4	PF13562.6	gi|408404387|ref|YP_006862370.1|	-	0.05	13.8	0.0	0.11	12.7	0.0	1.5	1	0	0	1	1	1	0	Sugar	nucleotidyl	transferase
Ribosomal_S13_N	PF08069.12	gi|408404388|ref|YP_006862371.1|	-	5.2e-23	80.8	0.6	9.6e-23	80.0	0.6	1.4	1	0	0	1	1	1	1	Ribosomal	S13/S15	N-terminal	domain
Ribosomal_S15	PF00312.22	gi|408404388|ref|YP_006862371.1|	-	2e-11	43.9	0.7	2e-11	43.9	0.7	1.5	2	0	0	2	2	2	1	Ribosomal	protein	S15
FixQ	PF05545.11	gi|408404390|ref|YP_006862373.1|	-	0.0027	17.6	2.5	0.0036	17.2	2.5	1.2	1	0	0	1	1	1	1	Cbb3-type	cytochrome	oxidase	component	FixQ
DUF347	PF03988.12	gi|408404390|ref|YP_006862373.1|	-	0.072	13.3	1.9	0.11	12.8	1.9	1.2	1	0	0	1	1	1	0	Repeat	of	Unknown	Function	(DUF347)
DUF555	PF04475.12	gi|408404391|ref|YP_006862374.1|	-	0.033	14.5	0.2	0.049	14.0	0.2	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF555)
Glyco_tran_28_C	PF04101.16	gi|408404392|ref|YP_006862375.1|	-	1.1e-11	45.1	0.0	1.7e-11	44.4	0.0	1.2	1	0	0	1	1	1	1	Glycosyltransferase	family	28	C-terminal	domain
Glyco_trans_1_3	PF13528.6	gi|408404392|ref|YP_006862375.1|	-	1.8e-08	34.0	0.1	0.0043	16.4	0.0	2.4	3	0	0	3	3	3	2	Glycosyl	transferase	family	1
UDPGT	PF00201.18	gi|408404392|ref|YP_006862375.1|	-	8.4e-06	24.8	0.0	3.8e-05	22.7	0.0	1.8	2	0	0	2	2	2	1	UDP-glucoronosyl	and	UDP-glucosyl	transferase
Glycos_transf_1	PF00534.20	gi|408404392|ref|YP_006862375.1|	-	0.00095	18.7	0.0	0.002	17.7	0.0	1.4	1	1	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.6	gi|408404392|ref|YP_006862375.1|	-	0.0063	16.9	0.0	0.012	16.0	0.0	1.5	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
AMMECR1	PF01871.17	gi|408404393|ref|YP_006862376.1|	-	2e-47	160.9	0.0	2.3e-47	160.7	0.0	1.0	1	0	0	1	1	1	1	AMMECR1
bPH_3	PF14470.6	gi|408404394|ref|YP_006862377.1|	-	3.6e-11	43.3	0.2	4.1e-11	43.1	0.2	1.1	1	0	0	1	1	1	1	Bacterial	PH	domain
zinc-ribbons_6	PF07191.12	gi|408404395|ref|YP_006862378.1|	-	0.011	15.7	0.3	0.011	15.7	0.3	1.2	1	0	0	1	1	1	0	zinc-ribbons
Zn-ribbon_8	PF09723.10	gi|408404395|ref|YP_006862378.1|	-	0.021	14.9	2.3	1.8	8.8	0.4	2.2	2	0	0	2	2	2	0	Zinc	ribbon	domain
DUF3268	PF11672.8	gi|408404395|ref|YP_006862378.1|	-	0.05	13.9	0.2	0.05	13.9	0.2	1.1	1	0	0	1	1	1	0	zinc-finger-containing	domain
Zn_Tnp_IS1	PF03811.13	gi|408404395|ref|YP_006862378.1|	-	0.2	11.4	2.9	0.94	9.3	2.9	1.9	1	1	0	1	1	1	0	InsA	N-terminal	domain
Glyoxalase	PF00903.25	gi|408404396|ref|YP_006862379.1|	-	4.1e-08	33.5	0.0	6.4e-08	32.9	0.0	1.3	1	1	0	1	1	1	1	Glyoxalase/Bleomycin	resistance	protein/Dioxygenase	superfamily
Glyoxalase_2	PF12681.7	gi|408404396|ref|YP_006862379.1|	-	0.033	14.1	0.0	0.079	12.9	0.0	1.6	1	1	0	1	1	1	0	Glyoxalase-like	domain
Glyoxalase_6	PF18029.1	gi|408404396|ref|YP_006862379.1|	-	0.049	14.4	0.0	0.11	13.3	0.0	1.6	1	1	0	1	1	1	0	Glyoxalase-like	domain
PEP_mutase	PF13714.6	gi|408404397|ref|YP_006862380.1|	-	5.8e-55	186.3	0.0	6.8e-55	186.1	0.0	1.0	1	0	0	1	1	1	1	Phosphoenolpyruvate	phosphomutase
ICL	PF00463.21	gi|408404397|ref|YP_006862380.1|	-	1.7e-13	49.9	0.0	2.5e-13	49.4	0.0	1.3	1	0	0	1	1	1	1	Isocitrate	lyase	family
DUF5311	PF17238.2	gi|408404397|ref|YP_006862380.1|	-	0.2	11.6	0.0	15	5.4	0.0	2.5	3	0	0	3	3	3	0	Family	of	unknown	function	(DUF5311)
Nas2_N	PF18265.1	gi|408404398|ref|YP_006862381.1|	-	0.036	14.0	0.1	0.04	13.8	0.1	1.1	1	0	0	1	1	1	0	Nas2	N_terminal	domain
Pox_polyA_pol	PF03296.13	gi|408404398|ref|YP_006862381.1|	-	0.073	13.0	0.1	0.081	12.8	0.1	1.0	1	0	0	1	1	1	0	Poxvirus	poly(A)	polymerase	nucleotidyltransferase	domain
4HBT	PF03061.22	gi|408404399|ref|YP_006862382.1|	-	7.1e-17	61.5	0.1	1.1e-16	60.9	0.1	1.3	1	0	0	1	1	1	1	Thioesterase	superfamily
MaoC_dehydratas	PF01575.19	gi|408404399|ref|YP_006862382.1|	-	0.1	12.2	0.0	0.15	11.6	0.0	1.3	1	0	0	1	1	1	0	MaoC	like	domain
NAD_binding_8	PF13450.6	gi|408404400|ref|YP_006862383.1|	-	0.00047	20.3	0.0	0.0012	19.0	0.0	1.8	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
ApbA	PF02558.16	gi|408404400|ref|YP_006862383.1|	-	0.012	15.2	0.0	0.021	14.5	0.0	1.3	1	0	0	1	1	1	0	Ketopantoate	reductase	PanE/ApbA
Glyco_transf_15	PF01793.16	gi|408404400|ref|YP_006862383.1|	-	0.025	13.9	0.6	0.051	12.8	0.6	1.6	1	0	0	1	1	1	0	Glycolipid	2-alpha-mannosyltransferase
Glyoxalase_2	PF12681.7	gi|408404400|ref|YP_006862383.1|	-	0.045	13.7	0.0	0.12	12.4	0.0	1.7	1	0	0	1	1	1	0	Glyoxalase-like	domain
FAD_binding_3	PF01494.19	gi|408404400|ref|YP_006862383.1|	-	0.11	11.7	0.0	0.14	11.3	0.0	1.2	1	0	0	1	1	1	0	FAD	binding	domain
Pyr_redox_2	PF07992.14	gi|408404400|ref|YP_006862383.1|	-	0.2	10.8	0.0	0.27	10.4	0.0	1.3	1	0	0	1	1	1	0	Pyridine	nucleotide-disulphide	oxidoreductase
Nop10p	PF04135.12	gi|408404401|ref|YP_006862384.1|	-	2e-21	75.7	7.5	2.5e-21	75.5	7.5	1.2	1	0	0	1	1	1	1	Nucleolar	RNA-binding	protein,	Nop10p	family
RecR	PF02132.15	gi|408404401|ref|YP_006862384.1|	-	0.0018	17.8	2.3	0.0022	17.5	2.3	1.2	1	0	0	1	1	1	1	RecR	protein
PolC_DP2	PF03833.13	gi|408404401|ref|YP_006862384.1|	-	0.0035	15.3	0.3	0.0035	15.3	0.3	1.0	1	0	0	1	1	1	1	DNA	polymerase	II	large	subunit	DP2
TackOD1	PF18551.1	gi|408404401|ref|YP_006862384.1|	-	0.056	13.1	2.2	0.067	12.9	2.2	1.2	1	0	0	1	1	1	0	Thaumarchaeal	output	domain	1
DNA_ligase_ZBD	PF03119.16	gi|408404401|ref|YP_006862384.1|	-	0.065	13.3	2.3	5.9	7.0	0.2	2.2	2	0	0	2	2	2	0	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
zf-ribbon_3	PF13248.6	gi|408404401|ref|YP_006862384.1|	-	0.17	11.3	7.9	0.7	9.4	0.7	2.2	1	1	1	2	2	2	0	zinc-ribbon	domain
zinc_ribbon_5	PF13719.6	gi|408404401|ref|YP_006862384.1|	-	0.37	10.6	2.9	6.2	6.7	0.2	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
zf-ACC	PF17848.1	gi|408404401|ref|YP_006862384.1|	-	0.5	10.5	8.5	0.55	10.4	0.9	2.2	1	1	1	2	2	2	0	Acetyl-coA	carboxylase	zinc	finger	domain
zf-TFIIB	PF13453.6	gi|408404401|ref|YP_006862384.1|	-	0.65	9.4	8.1	2.4	7.6	0.5	2.2	2	0	0	2	2	2	0	Transcription	factor	zinc-finger
TF_Zn_Ribbon	PF08271.12	gi|408404401|ref|YP_006862384.1|	-	1.1	8.8	6.5	5.3	6.7	0.9	2.2	2	0	0	2	2	2	0	TFIIB	zinc-binding
zf-tcix	PF14952.6	gi|408404401|ref|YP_006862384.1|	-	5.2	6.8	9.8	0.33	10.6	1.0	2.1	1	1	1	2	2	2	0	Putative	treble-clef,	zinc-finger,	Zn-binding
EIF_2_alpha	PF07541.12	gi|408404402|ref|YP_006862385.1|	-	7e-19	68.0	0.4	7e-19	68.0	0.4	2.3	2	1	1	3	3	3	1	Eukaryotic	translation	initiation	factor	2	alpha	subunit
S1	PF00575.23	gi|408404402|ref|YP_006862385.1|	-	2.2e-13	50.3	1.5	2.4e-13	50.2	0.2	1.8	2	0	0	2	2	2	1	S1	RNA	binding	domain
COG5	PF10392.9	gi|408404402|ref|YP_006862385.1|	-	0.013	15.7	1.9	0.025	14.7	0.3	2.0	2	0	0	2	2	2	0	Golgi	transport	complex	subunit	5
ATP-cone	PF03477.16	gi|408404403|ref|YP_006862386.1|	-	0.00013	22.4	0.4	0.00023	21.6	0.4	1.3	1	0	0	1	1	1	1	ATP	cone	domain
TGF_beta_GS	PF08515.12	gi|408404403|ref|YP_006862386.1|	-	0.12	11.9	0.0	0.22	11.0	0.0	1.4	1	0	0	1	1	1	0	Transforming	growth	factor	beta	type	I	GS-motif
CobA_CobO_BtuR	PF02572.15	gi|408404404|ref|YP_006862387.1|	-	1.1e-61	208.1	0.1	1.2e-61	207.9	0.1	1.0	1	0	0	1	1	1	1	ATP:corrinoid	adenosyltransferase	BtuR/CobO/CobP
IstB_IS21	PF01695.17	gi|408404404|ref|YP_006862387.1|	-	5.8e-06	26.2	0.9	0.0017	18.1	0.0	2.1	2	0	0	2	2	2	2	IstB-like	ATP	binding	protein
CbiA	PF01656.23	gi|408404404|ref|YP_006862387.1|	-	0.08	13.0	1.5	0.68	10.0	0.8	2.1	2	0	0	2	2	2	0	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
GATase_3	PF07685.14	gi|408404405|ref|YP_006862388.1|	-	2.7e-40	138.1	0.0	3.6e-40	137.7	0.0	1.2	1	0	0	1	1	1	1	CobB/CobQ-like	glutamine	amidotransferase	domain
CbiA	PF01656.23	gi|408404405|ref|YP_006862388.1|	-	1.8e-17	63.6	0.1	3.1e-17	62.8	0.1	1.4	1	0	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
AAA_26	PF13500.6	gi|408404405|ref|YP_006862388.1|	-	8.2e-16	58.4	1.8	5.8e-10	39.3	0.1	2.8	3	0	0	3	3	3	2	AAA	domain
Peptidase_S51	PF03575.17	gi|408404405|ref|YP_006862388.1|	-	0.053	13.2	0.0	0.086	12.5	0.0	1.3	1	0	0	1	1	1	0	Peptidase	family	S51
DUF1611	PF07755.11	gi|408404405|ref|YP_006862388.1|	-	0.078	12.3	0.2	1.3	8.2	0.1	2.2	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF1611_C)	P-loop	domain
AAA_18	PF13238.6	gi|408404405|ref|YP_006862388.1|	-	0.16	12.5	0.0	0.55	10.8	0.0	2.0	2	0	0	2	2	2	0	AAA	domain
CbiC	PF02570.15	gi|408404406|ref|YP_006862389.1|	-	5e-75	251.5	0.3	5.8e-75	251.3	0.3	1.0	1	0	0	1	1	1	1	Precorrin-8X	methylmutase
CbiX	PF01903.17	gi|408404407|ref|YP_006862390.1|	-	2.6e-35	121.0	0.0	2.2e-18	66.5	0.0	2.1	2	0	0	2	2	2	2	CbiX
CbiK	PF06180.11	gi|408404407|ref|YP_006862390.1|	-	4.9e-11	42.4	0.1	7.9e-11	41.8	0.1	1.3	1	0	0	1	1	1	1	Cobalt	chelatase	(CbiK)
Swi3	PF07962.12	gi|408404407|ref|YP_006862390.1|	-	0.033	14.2	0.0	0.082	12.9	0.0	1.6	1	0	0	1	1	1	0	Replication	Fork	Protection	Component	Swi3
PMT	PF02366.18	gi|408404409|ref|YP_006862392.1|	-	3.9e-13	49.6	7.5	3.9e-13	49.6	7.5	2.4	2	1	0	2	2	2	1	Dolichyl-phosphate-mannose-protein	mannosyltransferase
PMT_2	PF13231.6	gi|408404409|ref|YP_006862392.1|	-	6.7e-09	36.1	7.8	6.7e-09	36.1	7.8	3.2	3	1	0	3	3	3	1	Dolichyl-phosphate-mannose-protein	mannosyltransferase
DUF3099	PF11298.8	gi|408404409|ref|YP_006862392.1|	-	0.47	10.6	4.0	3.1	8.0	0.0	3.0	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF3099)
PMT_2	PF13231.6	gi|408404410|ref|YP_006862393.1|	-	9.2e-10	39.0	16.7	9.2e-10	39.0	16.7	3.5	3	2	1	4	4	4	1	Dolichyl-phosphate-mannose-protein	mannosyltransferase
HRG	PF16954.5	gi|408404410|ref|YP_006862393.1|	-	0.43	11.0	15.6	17	5.9	0.0	5.2	3	1	1	4	4	4	0	Haem-transporter,	endosomal/lysosomal,	haem-responsive	gene
DUF3043	PF11241.8	gi|408404410|ref|YP_006862393.1|	-	1	9.4	3.3	0.51	10.4	0.1	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3043)
CbiG_N	PF11760.8	gi|408404411|ref|YP_006862394.1|	-	3.5e-33	113.5	0.5	6.6e-33	112.6	0.5	1.5	1	0	0	1	1	1	1	Cobalamin	synthesis	G	N-terminal
CbiG_C	PF01890.16	gi|408404411|ref|YP_006862394.1|	-	3e-27	95.5	0.0	5.3e-27	94.7	0.0	1.4	1	0	0	1	1	1	1	Cobalamin	synthesis	G	C-terminus
CbiG_mid	PF11761.8	gi|408404411|ref|YP_006862394.1|	-	5.4e-15	55.3	0.0	1.3e-14	54.1	0.0	1.7	1	0	0	1	1	1	1	Cobalamin	biosynthesis	central	region
Myosin_N	PF02736.19	gi|408404412|ref|YP_006862395.1|	-	0.13	12.2	0.0	0.21	11.4	0.0	1.3	1	0	0	1	1	1	0	Myosin	N-terminal	SH3-like	domain
HTH_AsnC-type	PF13404.6	gi|408404413|ref|YP_006862396.1|	-	7e-13	48.2	0.0	1.1e-12	47.5	0.0	1.3	1	0	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
HTH_24	PF13412.6	gi|408404413|ref|YP_006862396.1|	-	1.4e-11	43.7	0.0	2.1e-11	43.2	0.0	1.3	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
TrmB	PF01978.19	gi|408404413|ref|YP_006862396.1|	-	7.9e-05	22.5	0.1	0.00016	21.5	0.1	1.4	1	1	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
zf-FCS	PF06467.14	gi|408404413|ref|YP_006862396.1|	-	0.00015	21.7	5.4	0.0003	20.7	5.4	1.6	1	0	0	1	1	1	1	MYM-type	Zinc	finger	with	FCS	sequence	motif
HTH_5	PF01022.20	gi|408404413|ref|YP_006862396.1|	-	0.00024	20.9	0.0	0.00041	20.2	0.0	1.4	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
Arc_trans_TRASH	PF08394.10	gi|408404413|ref|YP_006862396.1|	-	0.00034	20.9	3.1	0.00078	19.7	3.1	1.7	1	0	0	1	1	1	1	Archaeal	TRASH	domain
HTH_Tnp_ISL3	PF13542.6	gi|408404413|ref|YP_006862396.1|	-	0.00061	19.1	0.0	0.001	18.4	0.0	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain	of	transposase	family	ISL3
HTH_9	PF08221.11	gi|408404413|ref|YP_006862396.1|	-	0.0027	17.8	0.0	0.0042	17.1	0.0	1.3	1	0	0	1	1	1	1	RNA	polymerase	III	subunit	RPC82	helix-turn-helix	domain
DUF2089	PF09862.9	gi|408404413|ref|YP_006862396.1|	-	0.0039	17.2	0.5	0.043	13.8	0.2	2.2	1	1	1	2	2	2	1	Protein	of	unknown	function	(DUF2089)
DUF2250	PF10007.9	gi|408404413|ref|YP_006862396.1|	-	0.0048	17.0	0.7	0.0077	16.3	0.7	1.4	1	1	0	1	1	1	1	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
Fungal_TACC	PF12709.7	gi|408404413|ref|YP_006862396.1|	-	0.0096	16.4	2.4	3.2	8.3	0.2	2.4	2	0	0	2	2	2	2	Fungal	Transforming	acidic	coiled-coil	(TACC)	proteins
PyrI_C	PF02748.15	gi|408404413|ref|YP_006862396.1|	-	0.024	14.5	0.1	0.055	13.4	0.1	1.5	1	0	0	1	1	1	0	Aspartate	carbamoyltransferase	regulatory	chain,	metal	binding	domain
CBM_10	PF02013.16	gi|408404413|ref|YP_006862396.1|	-	0.036	14.5	0.1	0.069	13.6	0.1	1.4	1	0	0	1	1	1	0	Cellulose	or	protein	binding	domain
FeoC	PF09012.10	gi|408404413|ref|YP_006862396.1|	-	0.051	13.7	0.0	0.051	13.7	0.0	2.4	1	1	2	3	3	3	0	FeoC	like	transcriptional	regulator
MarR_2	PF12802.7	gi|408404413|ref|YP_006862396.1|	-	0.063	13.2	0.0	0.091	12.7	0.0	1.2	1	0	0	1	1	1	0	MarR	family
Sigma70_r4_2	PF08281.12	gi|408404413|ref|YP_006862396.1|	-	0.092	12.4	0.3	0.3	10.8	0.0	2.0	3	0	0	3	3	3	0	Sigma-70,	region	4
Fe_dep_repress	PF01325.19	gi|408404413|ref|YP_006862396.1|	-	0.092	13.0	0.0	0.16	12.2	0.0	1.4	1	0	0	1	1	1	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
DUF4423	PF14394.6	gi|408404413|ref|YP_006862396.1|	-	0.097	12.4	0.0	0.15	11.8	0.0	1.3	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4423)
DUF2423	PF10338.9	gi|408404413|ref|YP_006862396.1|	-	0.18	12.1	1.2	0.26	11.5	0.1	1.9	2	0	0	2	2	1	0	Protein	of	unknown	function	(DUF2423)
CbiD	PF01888.17	gi|408404414|ref|YP_006862397.1|	-	5.9e-92	307.5	7.1	7.6e-92	307.2	7.1	1.1	1	0	0	1	1	1	1	CbiD
PDGLE	PF13190.6	gi|408404414|ref|YP_006862397.1|	-	0.11	12.4	0.2	0.32	10.9	0.0	1.8	2	0	0	2	2	2	0	PDGLE	domain
adh_short_C2	PF13561.6	gi|408404415|ref|YP_006862398.1|	-	5.4e-54	183.2	1.4	6.2e-54	183.0	1.4	1.0	1	0	0	1	1	1	1	Enoyl-(Acyl	carrier	protein)	reductase
adh_short	PF00106.25	gi|408404415|ref|YP_006862398.1|	-	1.1e-49	168.6	0.5	1.4e-49	168.3	0.5	1.1	1	0	0	1	1	1	1	short	chain	dehydrogenase
KR	PF08659.10	gi|408404415|ref|YP_006862398.1|	-	1.1e-08	35.3	0.0	1.8e-08	34.5	0.0	1.3	1	0	0	1	1	1	1	KR	domain
Epimerase	PF01370.21	gi|408404415|ref|YP_006862398.1|	-	1.8e-06	27.6	0.3	1.4e-05	24.7	0.3	2.1	1	1	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
RmlD_sub_bind	PF04321.17	gi|408404415|ref|YP_006862398.1|	-	0.0018	17.4	0.0	0.0029	16.8	0.0	1.4	2	0	0	2	2	2	1	RmlD	substrate	binding	domain
DFP	PF04127.15	gi|408404415|ref|YP_006862398.1|	-	0.0046	16.8	0.1	0.0087	15.9	0.1	1.4	1	0	0	1	1	1	1	DNA	/	pantothenate	metabolism	flavoprotein
F420_oxidored	PF03807.17	gi|408404415|ref|YP_006862398.1|	-	0.0082	16.7	0.3	0.021	15.4	0.1	1.8	2	0	0	2	2	2	1	NADP	oxidoreductase	coenzyme	F420-dependent
3HCDH_N	PF02737.18	gi|408404415|ref|YP_006862398.1|	-	0.049	13.5	0.2	0.089	12.7	0.2	1.5	1	0	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
S-AdoMet_synt_C	PF02773.16	gi|408404416|ref|YP_006862399.1|	-	3e-70	234.6	0.9	5e-70	233.9	0.2	1.7	2	0	0	2	2	2	1	S-adenosylmethionine	synthetase,	C-terminal	domain
S-AdoMet_synt_M	PF02772.16	gi|408404416|ref|YP_006862399.1|	-	1.1e-46	158.0	0.2	5e-46	155.9	0.0	2.1	3	0	0	3	3	3	1	S-adenosylmethionine	synthetase,	central	domain
S-AdoMet_synt_N	PF00438.20	gi|408404416|ref|YP_006862399.1|	-	1.8e-43	147.2	0.3	4.6e-43	145.9	0.1	1.8	2	0	0	2	2	2	1	S-adenosylmethionine	synthetase,	N-terminal	domain
AdoMet_Synthase	PF01941.19	gi|408404416|ref|YP_006862399.1|	-	0.0036	16.2	0.2	0.19	10.5	0.1	2.4	2	1	1	3	3	3	2	S-adenosylmethionine	synthetase	(AdoMet	synthetase)
LSM	PF01423.22	gi|408404417|ref|YP_006862400.1|	-	1.2e-18	66.6	1.0	1.7e-18	66.0	1.0	1.3	1	0	0	1	1	1	1	LSM	domain
Rad51	PF08423.11	gi|408404418|ref|YP_006862401.1|	-	1.8e-30	106.1	0.2	4.1e-30	104.9	0.2	1.5	1	1	0	1	1	1	1	Rad51
RecA	PF00154.21	gi|408404418|ref|YP_006862401.1|	-	5.2e-11	42.5	0.8	7.6e-11	42.0	0.8	1.5	1	1	0	1	1	1	1	recA	bacterial	DNA	recombination	protein
ATPase	PF06745.13	gi|408404418|ref|YP_006862401.1|	-	4.7e-06	26.1	1.7	7.9e-05	22.1	0.6	2.7	1	1	1	3	3	3	1	KaiC
AAA_25	PF13481.6	gi|408404418|ref|YP_006862401.1|	-	6.5e-06	25.9	0.8	0.058	13.0	0.1	2.1	2	0	0	2	2	2	2	AAA	domain
AAA_24	PF13479.6	gi|408404418|ref|YP_006862401.1|	-	0.0003	20.6	0.0	0.00048	19.9	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
CLP1_P	PF16575.5	gi|408404418|ref|YP_006862401.1|	-	0.012	15.5	0.1	0.028	14.2	0.0	1.6	2	0	0	2	2	2	0	mRNA	cleavage	and	polyadenylation	factor	CLP1	P-loop
ABC_tran	PF00005.27	gi|408404418|ref|YP_006862401.1|	-	0.021	15.3	0.1	0.065	13.7	0.0	1.6	1	1	0	1	1	1	0	ABC	transporter
RNA_helicase	PF00910.22	gi|408404418|ref|YP_006862401.1|	-	0.022	15.1	0.0	0.12	12.7	0.0	2.0	2	0	0	2	2	2	0	RNA	helicase
AAA_16	PF13191.6	gi|408404418|ref|YP_006862401.1|	-	0.026	14.9	0.0	0.036	14.5	0.0	1.3	1	1	0	1	1	1	0	AAA	ATPase	domain
TrwB_AAD_bind	PF10412.9	gi|408404418|ref|YP_006862401.1|	-	0.039	12.9	0.0	0.088	11.7	0.0	1.5	1	0	0	1	1	1	0	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
MMR_HSR1	PF01926.23	gi|408404418|ref|YP_006862401.1|	-	0.057	13.5	0.1	1.2	9.2	0.1	2.7	1	1	0	1	1	1	0	50S	ribosome-binding	GTPase
CbiA	PF01656.23	gi|408404418|ref|YP_006862401.1|	-	0.073	13.1	0.0	0.11	12.6	0.0	1.3	1	1	0	1	1	1	0	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
IstB_IS21	PF01695.17	gi|408404418|ref|YP_006862401.1|	-	0.11	12.2	0.4	0.23	11.2	0.1	1.6	2	1	0	2	2	2	0	IstB-like	ATP	binding	protein
ATPase_2	PF01637.18	gi|408404418|ref|YP_006862401.1|	-	0.19	11.6	0.0	0.25	11.2	0.0	1.2	1	1	0	1	1	1	0	ATPase	domain	predominantly	from	Archaea
PAXNEB	PF05625.11	gi|408404418|ref|YP_006862401.1|	-	0.44	9.6	1.2	0.73	8.9	1.2	1.2	1	0	0	1	1	1	0	PAXNEB	protein
Glycos_transf_2	PF00535.26	gi|408404419|ref|YP_006862402.1|	-	7.6e-36	123.5	0.0	1.3e-35	122.8	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
GtrA	PF04138.14	gi|408404419|ref|YP_006862402.1|	-	1.1e-17	64.3	13.1	6.5e-17	61.9	13.7	1.9	1	1	0	1	1	1	1	GtrA-like	protein
Glyco_tranf_2_3	PF13641.6	gi|408404419|ref|YP_006862402.1|	-	1.7e-15	57.5	0.0	3.2e-15	56.7	0.0	1.6	1	1	0	1	1	1	1	Glycosyltransferase	like	family	2
NTP_transf_3	PF12804.7	gi|408404419|ref|YP_006862402.1|	-	4.7e-06	27.1	0.0	8e-06	26.3	0.0	1.3	1	0	0	1	1	1	1	MobA-like	NTP	transferase	domain
Glyco_transf_21	PF13506.6	gi|408404419|ref|YP_006862402.1|	-	7.2e-05	22.3	0.0	0.0002	20.9	0.0	1.8	2	1	0	2	2	2	1	Glycosyl	transferase	family	21
Glyco_tranf_2_2	PF10111.9	gi|408404419|ref|YP_006862402.1|	-	0.0092	15.5	0.0	0.014	14.9	0.0	1.3	1	0	0	1	1	1	1	Glycosyltransferase	like	family	2
Glyco_tranf_2_4	PF13704.6	gi|408404419|ref|YP_006862402.1|	-	0.031	14.8	0.0	0.057	13.9	0.0	1.5	1	0	0	1	1	1	0	Glycosyl	transferase	family	2
HTH_45	PF14947.6	gi|408404420|ref|YP_006862403.1|	-	0.0014	18.5	0.1	0.0017	18.3	0.1	1.1	1	0	0	1	1	1	1	Winged	helix-turn-helix
Mnd1	PF03962.15	gi|408404420|ref|YP_006862403.1|	-	0.032	14.5	0.0	0.048	13.9	0.0	1.3	1	0	0	1	1	1	0	Mnd1	HTH	domain
Exotox-A_cataly	PF09009.10	gi|408404421|ref|YP_006862404.1|	-	0.0089	15.8	0.0	0.015	15.0	0.0	1.3	1	0	0	1	1	1	1	Exotoxin	A	catalytic
dUTPase_2	PF08761.11	gi|408404422|ref|YP_006862405.1|	-	4.2e-18	66.1	3.1	8.9e-14	52.0	0.1	2.0	1	1	1	2	2	2	2	dUTPase
PRA-PH	PF01503.17	gi|408404422|ref|YP_006862405.1|	-	0.0039	17.6	0.0	0.0048	17.3	0.0	1.2	1	0	0	1	1	1	1	Phosphoribosyl-ATP	pyrophosphohydrolase
DUF550	PF04447.12	gi|408404422|ref|YP_006862405.1|	-	0.061	13.4	0.3	0.11	12.6	0.3	1.6	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF550)
MtrA	PF04208.14	gi|408404423|ref|YP_006862406.1|	-	2.8e-25	88.9	0.0	3.2e-25	88.8	0.0	1.1	1	0	0	1	1	1	1	Tetrahydromethanopterin	S-methyltransferase,	subunit	A
Birna_VP3	PF01767.16	gi|408404423|ref|YP_006862406.1|	-	0.011	15.8	0.0	0.014	15.5	0.0	1.1	1	0	0	1	1	1	0	Birnavirus	VP3	protein
Pro_CA	PF00484.19	gi|408404423|ref|YP_006862406.1|	-	0.12	12.7	0.0	0.16	12.3	0.0	1.2	1	0	0	1	1	1	0	Carbonic	anhydrase
T3SS_needle_reg	PF09025.10	gi|408404423|ref|YP_006862406.1|	-	0.13	12.3	0.0	0.21	11.6	0.0	1.4	1	0	0	1	1	1	0	YopR,	type	III	needle-polymerisation	regulator
Putative_PNPOx	PF01243.20	gi|408404424|ref|YP_006862407.1|	-	5.6e-19	68.1	0.0	8.2e-19	67.6	0.0	1.3	1	0	0	1	1	1	1	Pyridoxamine	5'-phosphate	oxidase
Pyridox_ox_2	PF12900.7	gi|408404424|ref|YP_006862407.1|	-	5e-11	42.8	0.0	7.3e-11	42.2	0.0	1.2	1	0	0	1	1	1	1	Pyridoxamine	5'-phosphate	oxidase
Pyrid_ox_like	PF16242.5	gi|408404424|ref|YP_006862407.1|	-	0.00014	21.4	0.0	0.00018	21.1	0.0	1.2	1	0	0	1	1	1	1	Pyridoxamine	5'-phosphate	oxidase	like
L_protein_N	PF15518.6	gi|408404424|ref|YP_006862407.1|	-	0.034	14.0	0.0	0.065	13.1	0.0	1.4	1	0	0	1	1	1	0	L	protein	N-terminus
Phage_holin_3_6	PF07332.11	gi|408404425|ref|YP_006862408.1|	-	0.0034	17.4	0.4	0.0044	17.1	0.4	1.1	1	0	0	1	1	1	1	Putative	Actinobacterial	Holin-X,	holin	superfamily	III
FeoB_associated	PF12669.7	gi|408404425|ref|YP_006862408.1|	-	0.016	15.6	0.4	3	8.3	0.0	2.3	2	0	0	2	2	2	0	FeoB-associated	Cys-rich	membrane	protein
EphA2_TM	PF14575.6	gi|408404425|ref|YP_006862408.1|	-	0.035	15.0	0.8	4.3	8.3	0.1	2.1	1	1	1	2	2	2	0	Ephrin	type-A	receptor	2	transmembrane	domain
DUF2798	PF11391.8	gi|408404425|ref|YP_006862408.1|	-	0.039	14.0	1.0	0.039	14.0	1.0	1.7	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2798)
DUF1361	PF07099.11	gi|408404425|ref|YP_006862408.1|	-	0.042	13.8	0.3	0.06	13.3	0.3	1.3	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF1361)
DUF2207	PF09972.9	gi|408404425|ref|YP_006862408.1|	-	0.042	12.6	0.2	0.046	12.5	0.2	1.0	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2207)
Syndecan	PF01034.20	gi|408404425|ref|YP_006862408.1|	-	0.043	13.7	0.2	4.7	7.2	0.2	2.2	2	0	0	2	2	2	0	Syndecan	domain
Trp_oprn_chp	PF09534.10	gi|408404425|ref|YP_006862408.1|	-	0.053	13.3	0.5	0.068	13.0	0.5	1.1	1	0	0	1	1	1	0	Tryptophan-associated	transmembrane	protein	(Trp_oprn_chp)
DUF2615	PF11027.8	gi|408404425|ref|YP_006862408.1|	-	0.13	12.4	0.4	0.29	11.3	0.1	1.7	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF2615)
Cortexin	PF11057.8	gi|408404425|ref|YP_006862408.1|	-	0.13	12.2	0.4	2.2	8.2	0.0	2.1	2	0	0	2	2	2	0	Cortexin	of	kidney
DUF4519	PF15012.6	gi|408404425|ref|YP_006862408.1|	-	0.14	12.4	2.0	0.26	11.5	0.0	2.0	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4519)
Neurensin	PF14927.6	gi|408404425|ref|YP_006862408.1|	-	0.72	9.6	2.7	6.3	6.5	0.4	2.0	1	1	1	2	2	2	0	Neurensin
Gram_pos_anchor	PF00746.21	gi|408404425|ref|YP_006862408.1|	-	1.4	8.9	0.0	1.4	8.9	0.0	2.2	2	0	0	2	2	2	0	LPXTG	cell	wall	anchor	motif
DUF892	PF05974.12	gi|408404427|ref|YP_006862410.1|	-	1.8e-07	31.3	0.2	2.2e-07	31.1	0.2	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF892)
Cupin_3	PF05899.12	gi|408404428|ref|YP_006862411.1|	-	3.7e-07	29.7	0.0	1e-06	28.4	0.0	1.7	1	1	1	2	2	2	1	Protein	of	unknown	function	(DUF861)
Cupin_2	PF07883.11	gi|408404428|ref|YP_006862411.1|	-	5.9e-07	29.1	0.1	1e-06	28.3	0.1	1.5	1	1	0	1	1	1	1	Cupin	domain
AraC_binding_2	PF14525.6	gi|408404428|ref|YP_006862411.1|	-	5e-06	26.3	0.0	6.5e-06	25.9	0.0	1.1	1	0	0	1	1	1	1	AraC-binding-like	domain
AraC_binding	PF02311.19	gi|408404428|ref|YP_006862411.1|	-	0.0004	20.3	0.1	0.0006	19.7	0.1	1.2	1	0	0	1	1	1	1	AraC-like	ligand	binding	domain
EutQ	PF06249.12	gi|408404428|ref|YP_006862411.1|	-	0.032	14.0	0.0	0.048	13.4	0.0	1.5	1	1	0	1	1	1	0	Ethanolamine	utilisation	protein	EutQ
Cupin_6	PF12852.7	gi|408404428|ref|YP_006862411.1|	-	0.12	12.0	0.0	0.15	11.8	0.0	1.1	1	0	0	1	1	1	0	Cupin
Methyltransf_25	PF13649.6	gi|408404429|ref|YP_006862412.1|	-	2e-15	57.3	0.0	3.9e-15	56.3	0.0	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.6	gi|408404429|ref|YP_006862412.1|	-	4.6e-14	52.6	0.0	7.3e-14	51.9	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.6	gi|408404429|ref|YP_006862412.1|	-	5.3e-14	52.3	0.0	8.2e-14	51.7	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_11	PF08241.12	gi|408404429|ref|YP_006862412.1|	-	1.4e-12	48.1	0.0	2.5e-12	47.3	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.12	gi|408404429|ref|YP_006862412.1|	-	3e-09	37.5	0.0	6.6e-09	36.4	0.0	1.6	1	0	0	1	1	1	1	Methyltransferase	domain
Ubie_methyltran	PF01209.18	gi|408404429|ref|YP_006862412.1|	-	3.3e-08	33.1	0.0	7.6e-07	28.7	0.0	2.1	2	0	0	2	2	2	1	ubiE/COQ5	methyltransferase	family
MTS	PF05175.14	gi|408404429|ref|YP_006862412.1|	-	0.00036	20.1	0.1	0.00072	19.1	0.0	1.5	2	0	0	2	2	2	1	Methyltransferase	small	domain
PCMT	PF01135.19	gi|408404429|ref|YP_006862412.1|	-	0.0031	17.3	0.0	0.0049	16.6	0.0	1.2	1	0	0	1	1	1	1	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
PrmA	PF06325.13	gi|408404429|ref|YP_006862412.1|	-	0.024	14.0	0.0	0.04	13.3	0.0	1.3	1	0	0	1	1	1	0	Ribosomal	protein	L11	methyltransferase	(PrmA)
GCD14	PF08704.10	gi|408404429|ref|YP_006862412.1|	-	0.072	12.8	0.0	0.13	11.9	0.0	1.4	1	0	0	1	1	1	0	tRNA	methyltransferase	complex	GCD14	subunit
CMAS	PF02353.20	gi|408404429|ref|YP_006862412.1|	-	0.15	11.3	0.0	0.28	10.4	0.0	1.4	2	0	0	2	2	2	0	Mycolic	acid	cyclopropane	synthetase
TehB	PF03848.14	gi|408404429|ref|YP_006862412.1|	-	0.17	11.3	0.0	0.45	9.9	0.0	1.7	1	1	0	1	1	1	0	Tellurite	resistance	protein	TehB
FtsJ	PF01728.19	gi|408404429|ref|YP_006862412.1|	-	0.19	11.8	0.0	0.28	11.3	0.0	1.3	1	0	0	1	1	1	0	FtsJ-like	methyltransferase
HSP20	PF00011.21	gi|408404431|ref|YP_006862414.1|	-	6.3e-08	32.7	0.0	8.6e-08	32.3	0.0	1.1	1	0	0	1	1	1	1	Hsp20/alpha	crystallin	family
ArsA_HSP20	PF17886.1	gi|408404431|ref|YP_006862414.1|	-	2e-06	27.3	0.0	3.6e-06	26.4	0.0	1.5	1	1	0	1	1	1	1	HSP20-like	domain	found	in	ArsA
RNA_lig_T4_1	PF09511.10	gi|408404432|ref|YP_006862415.1|	-	0.14	12.0	0.1	0.14	12.0	0.1	1.1	1	0	0	1	1	1	0	RNA	ligase
Med27	PF11571.8	gi|408404434|ref|YP_006862417.1|	-	0.091	13.1	0.0	0.091	13.1	0.0	1.0	1	0	0	1	1	1	0	Mediator	complex	subunit	27
HTH_45	PF14947.6	gi|408404435|ref|YP_006862418.1|	-	8e-14	51.4	1.1	9.3e-14	51.2	1.1	1.0	1	0	0	1	1	1	1	Winged	helix-turn-helix
FKBP26_C	PF18046.1	gi|408404436|ref|YP_006862419.1|	-	0.044	13.9	0.7	1.3	9.1	0.3	2.1	1	1	1	2	2	2	0	FKBP26_C-terminal
DUF4836	PF16120.5	gi|408404438|ref|YP_006862421.1|	-	0.034	13.1	0.0	0.034	13.1	0.0	1.0	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4836)
Arginase	PF00491.21	gi|408404439|ref|YP_006862422.1|	-	0.015	14.8	0.1	0.018	14.6	0.1	1.1	1	0	0	1	1	1	0	Arginase	family
DUF4035	PF13227.6	gi|408404439|ref|YP_006862422.1|	-	0.032	14.0	0.0	0.22	11.3	0.0	2.1	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF4035)
Dicistro_VP4	PF11492.8	gi|408404439|ref|YP_006862422.1|	-	0.15	12.0	0.7	1	9.4	0.4	2.0	2	0	0	2	2	2	0	Cricket	paralysis	virus,	VP4
bPH_3	PF14470.6	gi|408404440|ref|YP_006862423.1|	-	0.0048	17.2	0.0	0.0048	17.2	0.0	1.2	1	0	0	1	1	1	1	Bacterial	PH	domain
Glyoxalase_2	PF12681.7	gi|408404441|ref|YP_006862424.1|	-	6.2e-13	48.7	0.1	9.3e-13	48.1	0.1	1.3	1	0	0	1	1	1	1	Glyoxalase-like	domain
Glyoxalase	PF00903.25	gi|408404441|ref|YP_006862424.1|	-	9.9e-12	45.2	0.0	1.2e-11	44.9	0.0	1.1	1	0	0	1	1	1	1	Glyoxalase/Bleomycin	resistance	protein/Dioxygenase	superfamily
Glyoxalase_6	PF18029.1	gi|408404441|ref|YP_006862424.1|	-	0.021	15.6	0.0	0.028	15.2	0.0	1.2	1	0	0	1	1	1	0	Glyoxalase-like	domain
Glyoxalase_4	PF13669.6	gi|408404441|ref|YP_006862424.1|	-	0.088	13.1	0.0	0.22	11.8	0.0	1.8	1	1	0	1	1	1	0	Glyoxalase/Bleomycin	resistance	protein/Dioxygenase	superfamily
Methyltransf_25	PF13649.6	gi|408404442|ref|YP_006862425.1|	-	2.2e-14	53.9	0.0	4.8e-14	52.8	0.0	1.6	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_11	PF08241.12	gi|408404442|ref|YP_006862425.1|	-	7e-14	52.3	0.1	1.9e-13	50.9	0.0	1.8	2	0	0	2	2	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.6	gi|408404442|ref|YP_006862425.1|	-	1.1e-13	51.3	0.0	1.7e-13	50.7	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.6	gi|408404442|ref|YP_006862425.1|	-	7.1e-13	48.7	0.0	1.2e-12	48.0	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.12	gi|408404442|ref|YP_006862425.1|	-	2.6e-12	47.3	0.0	4.5e-12	46.6	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_2	PF00891.18	gi|408404442|ref|YP_006862425.1|	-	1.5e-09	37.5	0.0	2.2e-09	36.9	0.0	1.2	1	0	0	1	1	1	1	O-methyltransferase	domain
Methyltransf_9	PF08003.11	gi|408404442|ref|YP_006862425.1|	-	3.1e-07	29.6	0.0	4.1e-07	29.2	0.0	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1698)
MTS	PF05175.14	gi|408404442|ref|YP_006862425.1|	-	1.1e-06	28.2	0.0	2e-06	27.4	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	small	domain
MetW	PF07021.12	gi|408404442|ref|YP_006862425.1|	-	1.4e-06	28.0	0.0	2e-06	27.5	0.0	1.2	1	0	0	1	1	1	1	Methionine	biosynthesis	protein	MetW
Ubie_methyltran	PF01209.18	gi|408404442|ref|YP_006862425.1|	-	1.6e-05	24.4	0.0	2.9e-05	23.5	0.0	1.4	1	0	0	1	1	1	1	ubiE/COQ5	methyltransferase	family
Methyltransf_4	PF02390.17	gi|408404442|ref|YP_006862425.1|	-	5.8e-05	22.6	0.1	0.00021	20.8	0.0	2.0	3	0	0	3	3	3	1	Putative	methyltransferase
NodS	PF05401.11	gi|408404442|ref|YP_006862425.1|	-	0.0001	22.0	0.0	0.00016	21.4	0.0	1.2	1	0	0	1	1	1	1	Nodulation	protein	S	(NodS)
CMAS	PF02353.20	gi|408404442|ref|YP_006862425.1|	-	0.00029	20.2	0.0	0.00042	19.7	0.0	1.2	1	0	0	1	1	1	1	Mycolic	acid	cyclopropane	synthetase
DprA_WH	PF17782.1	gi|408404442|ref|YP_006862425.1|	-	0.0017	18.4	0.0	0.0032	17.6	0.0	1.3	1	0	0	1	1	1	1	DprA	winged	helix	domain
Methyltransf_32	PF13679.6	gi|408404442|ref|YP_006862425.1|	-	0.0078	16.2	0.0	0.012	15.6	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
MarR_2	PF12802.7	gi|408404442|ref|YP_006862425.1|	-	0.011	15.5	0.0	0.04	13.8	0.0	1.9	2	0	0	2	2	2	0	MarR	family
PCMT	PF01135.19	gi|408404442|ref|YP_006862425.1|	-	0.013	15.2	0.0	0.037	13.8	0.0	1.7	2	0	0	2	2	2	0	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
Pox_MCEL	PF03291.16	gi|408404442|ref|YP_006862425.1|	-	0.023	13.8	0.0	0.035	13.2	0.0	1.4	1	0	0	1	1	1	0	mRNA	capping	enzyme
PrmA	PF06325.13	gi|408404442|ref|YP_006862425.1|	-	0.028	13.8	0.0	0.039	13.3	0.0	1.2	1	0	0	1	1	1	0	Ribosomal	protein	L11	methyltransferase	(PrmA)
FAD-oxidase_C	PF02913.19	gi|408404443|ref|YP_006862426.1|	-	1.9e-49	168.6	0.0	2.6e-49	168.1	0.0	1.2	1	0	0	1	1	1	1	FAD	linked	oxidases,	C-terminal	domain
FAD_binding_4	PF01565.23	gi|408404443|ref|YP_006862426.1|	-	1.8e-36	125.0	0.0	3.4e-36	124.0	0.0	1.4	1	0	0	1	1	1	1	FAD	binding	domain
DnaJ_CXXCXGXG	PF00684.19	gi|408404444|ref|YP_006862427.1|	-	0.00035	20.9	10.1	0.00081	19.7	9.6	1.8	1	1	0	1	1	1	1	DnaJ	central	domain
Zn_Tnp_IS1595	PF12760.7	gi|408404444|ref|YP_006862427.1|	-	0.081	12.9	11.8	1.3	9.1	3.4	3.0	1	1	2	3	3	3	0	Transposase	zinc-ribbon	domain
DUF5351	PF17302.2	gi|408404444|ref|YP_006862427.1|	-	0.14	12.4	7.7	1.7	8.9	0.4	2.9	3	0	0	3	3	3	0	Family	of	unknown	function	(DUF5351)
Anti-TRAP	PF15777.5	gi|408404444|ref|YP_006862427.1|	-	0.15	12.1	14.6	0.27	11.2	0.4	2.9	1	1	1	2	2	2	0	Tryptophan	RNA-binding	attenuator	protein	inhibitory	protein
Lar_restr_allev	PF14354.6	gi|408404444|ref|YP_006862427.1|	-	0.19	12.1	17.1	0.55	10.7	1.7	3.1	1	1	2	3	3	3	0	Restriction	alleviation	protein	Lar
YacG	PF03884.14	gi|408404444|ref|YP_006862427.1|	-	0.21	11.4	11.4	0.59	9.9	1.9	2.6	2	1	1	3	3	3	0	DNA	gyrase	inhibitor	YacG
zf-nanos	PF05741.13	gi|408404444|ref|YP_006862427.1|	-	0.36	11.1	12.0	1.4	9.2	7.7	2.8	2	1	0	2	2	2	0	Nanos	RNA	binding	domain
Rad50_zn_hook	PF04423.14	gi|408404444|ref|YP_006862427.1|	-	0.59	10.0	10.8	3.5	7.5	0.1	3.5	3	1	1	4	4	4	0	Rad50	zinc	hook	motif
Prok-RING_4	PF14447.6	gi|408404444|ref|YP_006862427.1|	-	1.6	8.6	17.9	8.6	6.3	0.3	3.2	2	1	1	3	3	3	0	Prokaryotic	RING	finger	family	4
zf-Di19	PF05605.12	gi|408404444|ref|YP_006862427.1|	-	2.8	8.3	16.4	9.1	6.7	0.4	2.8	1	1	1	2	2	2	0	Drought	induced	19	protein	(Di19),	zinc-binding
zf_CopZ	PF18423.1	gi|408404444|ref|YP_006862427.1|	-	5.7	7.0	12.9	15	5.6	0.2	3.2	3	0	0	3	3	3	0	Zinc	binding	domain
Prim_Zn_Ribbon	PF08273.12	gi|408404444|ref|YP_006862427.1|	-	7.1	7.0	18.2	7.1	7.0	2.4	3.2	2	1	1	3	3	3	0	Zinc-binding	domain	of	primase-helicase
DUF359	PF04019.12	gi|408404445|ref|YP_006862428.1|	-	4.4e-37	126.5	0.0	6.1e-37	126.1	0.0	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF359)
Glyco_transf_4	PF13439.6	gi|408404445|ref|YP_006862428.1|	-	0.055	13.5	0.0	0.11	12.5	0.0	1.4	2	0	0	2	2	2	0	Glycosyltransferase	Family	4
MAF_flag10	PF01973.18	gi|408404445|ref|YP_006862428.1|	-	0.059	13.1	0.0	0.077	12.7	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	DUF115
HEM4	PF02602.15	gi|408404445|ref|YP_006862428.1|	-	0.077	12.3	0.0	0.33	10.3	0.0	1.8	1	1	1	2	2	2	0	Uroporphyrinogen-III	synthase	HemD
ParA	PF10609.9	gi|408404446|ref|YP_006862429.1|	-	7e-102	340.1	0.6	9.1e-102	339.7	0.6	1.1	1	0	0	1	1	1	1	NUBPL	iron-transfer	P-loop	NTPase
FeS_assembly_P	PF01883.19	gi|408404446|ref|YP_006862429.1|	-	1.9e-20	72.8	0.1	6.4e-20	71.1	0.1	1.9	1	0	0	1	1	1	1	Iron-sulfur	cluster	assembly	protein
CbiA	PF01656.23	gi|408404446|ref|YP_006862429.1|	-	4.1e-15	56.0	0.0	1.1e-14	54.5	0.0	1.7	1	1	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
AAA_31	PF13614.6	gi|408404446|ref|YP_006862429.1|	-	3.2e-11	43.5	7.8	2.2e-10	40.7	1.5	2.7	2	1	0	3	3	3	1	AAA	domain
MipZ	PF09140.11	gi|408404446|ref|YP_006862429.1|	-	1.1e-06	28.2	1.4	1.5e-06	27.7	0.2	2.0	2	1	0	2	2	2	1	ATPase	MipZ
Fer4_NifH	PF00142.18	gi|408404446|ref|YP_006862429.1|	-	1.2e-06	28.2	0.2	3.5e-05	23.4	0.0	2.2	2	0	0	2	2	2	1	4Fe-4S	iron	sulfur	cluster	binding	proteins,	NifH/frxC	family
ArsA_ATPase	PF02374.15	gi|408404446|ref|YP_006862429.1|	-	4.9e-06	25.9	4.3	7.1e-06	25.4	1.2	2.5	2	1	1	3	3	3	1	Anion-transporting	ATPase
AAA_26	PF13500.6	gi|408404446|ref|YP_006862429.1|	-	4.1e-05	23.5	1.9	0.084	12.7	0.0	2.5	2	0	0	2	2	2	2	AAA	domain
VirC1	PF07015.11	gi|408404446|ref|YP_006862429.1|	-	0.00012	21.4	0.1	0.00026	20.4	0.1	1.5	1	0	0	1	1	1	1	VirC1	protein
AAA_25	PF13481.6	gi|408404446|ref|YP_006862429.1|	-	0.0022	17.6	0.2	0.0039	16.8	0.2	1.3	1	0	0	1	1	1	1	AAA	domain
CBP_BcsQ	PF06564.12	gi|408404446|ref|YP_006862429.1|	-	0.0045	16.5	0.1	0.041	13.4	0.2	2.0	2	0	0	2	2	2	1	Cellulose	biosynthesis	protein	BcsQ
SRP54	PF00448.22	gi|408404446|ref|YP_006862429.1|	-	0.011	15.4	0.4	0.025	14.2	0.4	1.6	1	0	0	1	1	1	0	SRP54-type	protein,	GTPase	domain
CLP1_P	PF16575.5	gi|408404446|ref|YP_006862429.1|	-	0.071	12.9	0.0	0.12	12.2	0.0	1.3	1	0	0	1	1	1	0	mRNA	cleavage	and	polyadenylation	factor	CLP1	P-loop
APS_kinase	PF01583.20	gi|408404446|ref|YP_006862429.1|	-	0.11	12.3	0.1	0.21	11.4	0.1	1.5	1	0	0	1	1	1	0	Adenylylsulphate	kinase
TFIIB	PF00382.19	gi|408404447|ref|YP_006862430.1|	-	1.4e-22	79.5	3.5	1.3e-12	47.5	0.4	2.3	2	0	0	2	2	2	2	Transcription	factor	TFIIB	repeat
TF_Zn_Ribbon	PF08271.12	gi|408404447|ref|YP_006862430.1|	-	5.3e-11	41.9	2.2	6.3e-11	41.6	0.9	1.8	2	0	0	2	2	2	1	TFIIB	zinc-binding
DUF2318	PF10080.9	gi|408404447|ref|YP_006862430.1|	-	0.016	15.3	0.6	0.036	14.2	0.6	1.5	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2318)
zf-RING_9	PF13901.6	gi|408404447|ref|YP_006862430.1|	-	0.02	14.9	2.4	0.029	14.3	0.4	2.1	2	1	0	2	2	2	0	Putative	zinc-RING	and/or	ribbon
Ribosomal_S27e	PF01667.17	gi|408404447|ref|YP_006862430.1|	-	0.027	14.2	2.0	0.055	13.2	2.0	1.4	1	0	0	1	1	1	0	Ribosomal	protein	S27
TPR_19	PF14559.6	gi|408404447|ref|YP_006862430.1|	-	0.067	13.7	0.0	0.16	12.5	0.0	1.7	1	0	0	1	1	1	0	Tetratricopeptide	repeat
RB_B	PF01857.20	gi|408404447|ref|YP_006862430.1|	-	0.094	12.7	0.1	0.21	11.6	0.1	1.6	1	0	0	1	1	1	0	Retinoblastoma-associated	protein	B	domain
Fer2_3	PF13085.6	gi|408404447|ref|YP_006862430.1|	-	0.14	12.2	1.1	0.75	9.8	0.2	2.4	3	0	0	3	3	3	0	2Fe-2S	iron-sulfur	cluster	binding	domain
RHH_4	PF13467.6	gi|408404448|ref|YP_006862431.1|	-	0.12	12.3	0.0	0.25	11.2	0.0	1.5	1	0	0	1	1	1	0	Ribbon-helix-helix	domain
RHH_1	PF01402.21	gi|408404448|ref|YP_006862431.1|	-	0.72	9.9	0.0	0.72	9.9	0.0	2.5	3	0	0	3	3	3	0	Ribbon-helix-helix	protein,	copG	family
SHS2_Rpb7-N	PF03876.17	gi|408404449|ref|YP_006862432.1|	-	8.2e-17	61.4	0.0	8.8e-16	58.0	0.0	2.1	2	0	0	2	2	2	1	SHS2	domain	found	in	N	terminus	of	Rpb7p/Rpc25p/MJ0397
S1	PF00575.23	gi|408404449|ref|YP_006862432.1|	-	3.6e-13	49.7	0.1	9.7e-13	48.3	0.1	1.7	1	1	0	1	1	1	1	S1	RNA	binding	domain
S1_2	PF13509.6	gi|408404449|ref|YP_006862432.1|	-	0.0035	17.4	0.0	0.01	15.9	0.0	1.8	1	1	1	2	2	2	1	S1	domain
Spt4	PF06093.13	gi|408404450|ref|YP_006862433.1|	-	4.2e-15	55.6	0.2	5.3e-15	55.3	0.2	1.1	1	0	0	1	1	1	1	Spt4/RpoE2	zinc	finger
RecR	PF02132.15	gi|408404450|ref|YP_006862433.1|	-	0.0047	16.5	1.8	0.0059	16.1	1.8	1.2	1	0	0	1	1	1	1	RecR	protein
TF_Zn_Ribbon	PF08271.12	gi|408404450|ref|YP_006862433.1|	-	0.01	15.3	0.6	0.02	14.4	0.0	1.7	2	0	0	2	2	2	0	TFIIB	zinc-binding
TackOD1	PF18551.1	gi|408404450|ref|YP_006862433.1|	-	0.018	14.7	0.3	0.018	14.7	0.3	1.2	1	0	0	1	1	1	0	Thaumarchaeal	output	domain	1
zf-RING_4	PF14570.6	gi|408404450|ref|YP_006862433.1|	-	0.22	11.3	3.4	0.33	10.8	3.4	1.3	1	0	0	1	1	1	0	RING/Ubox	like	zinc-binding	domain
Nop10p	PF04135.12	gi|408404450|ref|YP_006862433.1|	-	0.28	11.3	2.9	0.25	11.4	2.0	1.6	1	1	0	1	1	1	0	Nucleolar	RNA-binding	protein,	Nop10p	family
QRPTase_C	PF01729.19	gi|408404451|ref|YP_006862434.1|	-	4.3e-53	179.6	0.4	6.3e-53	179.0	0.4	1.3	1	0	0	1	1	1	1	Quinolinate	phosphoribosyl	transferase,	C-terminal	domain
QRPTase_N	PF02749.16	gi|408404451|ref|YP_006862434.1|	-	2.1e-27	95.0	0.1	4e-27	94.1	0.1	1.5	1	0	0	1	1	1	1	Quinolinate	phosphoribosyl	transferase,	N-terminal	domain
Ribul_P_3_epim	PF00834.19	gi|408404451|ref|YP_006862434.1|	-	0.004	16.6	0.1	0.019	14.4	0.0	1.9	1	1	1	2	2	2	1	Ribulose-phosphate	3	epimerase	family
Biotin_lipoyl_2	PF13533.6	gi|408404451|ref|YP_006862434.1|	-	0.071	13.0	0.0	0.18	11.6	0.0	1.7	1	0	0	1	1	1	0	Biotin-lipoyl	like
NadA	PF02445.16	gi|408404452|ref|YP_006862435.1|	-	4.1e-116	387.3	6.0	4.6e-116	387.2	6.0	1.0	1	0	0	1	1	1	1	Quinolinate	synthetase	A	protein
Ribosomal_S8	PF00410.19	gi|408404452|ref|YP_006862435.1|	-	0.056	13.4	0.2	0.28	11.1	0.1	2.0	2	0	0	2	2	2	0	Ribosomal	protein	S8
DUF2195	PF09961.9	gi|408404452|ref|YP_006862435.1|	-	0.057	13.4	0.1	0.14	12.1	0.1	1.7	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2195)
Ribosomal_S30	PF04758.14	gi|408404453|ref|YP_006862436.1|	-	5e-11	42.6	3.7	6.2e-11	42.3	3.7	1.1	1	0	0	1	1	1	1	Ribosomal	protein	S30
DUF108	PF01958.18	gi|408404454|ref|YP_006862437.1|	-	1.2e-33	115.3	1.4	2.2e-33	114.5	1.4	1.4	1	0	0	1	1	1	1	Domain	of	unknown	function	DUF108
NAD_binding_3	PF03447.16	gi|408404454|ref|YP_006862437.1|	-	3.9e-16	59.7	0.0	8e-16	58.7	0.0	1.5	1	0	0	1	1	1	1	Homoserine	dehydrogenase,	NAD	binding	domain
Phage_coat	PF09063.10	gi|408404454|ref|YP_006862437.1|	-	0.0063	16.5	0.1	0.012	15.6	0.1	1.4	1	0	0	1	1	1	1	Phage	PP7	coat	protein
TRAM	PF01938.20	gi|408404455|ref|YP_006862438.1|	-	2.3e-12	46.7	0.8	2.8e-12	46.5	0.8	1.1	1	0	0	1	1	1	1	TRAM	domain
Cupredoxin_1	PF13473.6	gi|408404456|ref|YP_006862439.1|	-	1.8e-06	28.0	0.0	2.5e-06	27.6	0.0	1.3	1	0	0	1	1	1	1	Cupredoxin-like	domain
Copper-bind	PF00127.20	gi|408404456|ref|YP_006862439.1|	-	0.12	12.8	0.0	0.18	12.2	0.0	1.3	1	1	0	1	1	1	0	Copper	binding	proteins,	plastocyanin/azurin	family
MMR_HSR1_Xtn	PF16897.5	gi|408404457|ref|YP_006862440.1|	-	3.6e-29	100.9	0.1	7.6e-29	99.8	0.1	1.6	1	0	0	1	1	1	1	C-terminal	region	of	MMR_HSR1	domain
TGS	PF02824.21	gi|408404457|ref|YP_006862440.1|	-	3e-23	81.6	0.0	6.8e-23	80.5	0.0	1.7	1	0	0	1	1	1	1	TGS	domain
MMR_HSR1	PF01926.23	gi|408404457|ref|YP_006862440.1|	-	1.4e-22	79.9	0.0	2.9e-22	78.9	0.0	1.5	1	0	0	1	1	1	1	50S	ribosome-binding	GTPase
FeoB_N	PF02421.18	gi|408404457|ref|YP_006862440.1|	-	5e-16	58.6	0.1	4.7e-13	49.0	0.0	2.2	2	0	0	2	2	2	2	Ferrous	iron	transport	protein	B
RsgA_GTPase	PF03193.16	gi|408404457|ref|YP_006862440.1|	-	2e-07	31.0	0.2	0.015	15.2	0.0	2.5	2	0	0	2	2	2	2	RsgA	GTPase
AIG1	PF04548.16	gi|408404457|ref|YP_006862440.1|	-	0.00019	20.9	0.1	0.00039	19.8	0.1	1.5	1	0	0	1	1	1	1	AIG1	family
Arf	PF00025.21	gi|408404457|ref|YP_006862440.1|	-	0.00063	19.2	0.2	0.093	12.2	0.0	2.4	2	0	0	2	2	2	1	ADP-ribosylation	factor	family
Dynamin_N	PF00350.23	gi|408404457|ref|YP_006862440.1|	-	0.0011	19.0	0.1	0.39	10.8	0.1	2.5	1	1	1	2	2	2	1	Dynamin	family
Ras	PF00071.22	gi|408404457|ref|YP_006862440.1|	-	0.0012	18.4	0.0	0.57	9.8	0.0	2.4	2	0	0	2	2	2	2	Ras	family
cobW	PF02492.19	gi|408404457|ref|YP_006862440.1|	-	0.0026	17.4	0.3	0.61	9.6	0.0	2.4	2	1	0	2	2	2	1	CobW/HypB/UreG,	nucleotide-binding	domain
SRPRB	PF09439.10	gi|408404457|ref|YP_006862440.1|	-	0.0028	17.1	0.0	0.0063	16.0	0.0	1.5	1	0	0	1	1	1	1	Signal	recognition	particle	receptor	beta	subunit
Roc	PF08477.13	gi|408404457|ref|YP_006862440.1|	-	0.018	15.3	0.1	0.063	13.5	0.0	2.0	2	0	0	2	2	2	0	Ras	of	Complex,	Roc,	domain	of	DAPkinase
MCM	PF00493.23	gi|408404457|ref|YP_006862440.1|	-	0.029	13.5	0.0	0.051	12.7	0.0	1.3	1	0	0	1	1	1	0	MCM	P-loop	domain
DNA_pol_A	PF00476.20	gi|408404457|ref|YP_006862440.1|	-	0.042	12.9	0.0	0.093	11.8	0.0	1.5	1	0	0	1	1	1	0	DNA	polymerase	family	A
AAA_28	PF13521.6	gi|408404457|ref|YP_006862440.1|	-	0.043	14.0	0.1	0.092	13.0	0.1	1.5	1	0	0	1	1	1	0	AAA	domain
AAA_16	PF13191.6	gi|408404457|ref|YP_006862440.1|	-	0.053	13.9	0.2	0.13	12.7	0.2	1.7	1	1	0	1	1	1	0	AAA	ATPase	domain
AAA_22	PF13401.6	gi|408404457|ref|YP_006862440.1|	-	0.062	13.6	0.0	0.16	12.3	0.0	1.7	1	0	0	1	1	1	0	AAA	domain
ATF7IP_BD	PF16788.5	gi|408404457|ref|YP_006862440.1|	-	0.23	11.6	1.4	0.38	10.8	1.4	1.2	1	0	0	1	1	1	0	ATF-interacting	protein	binding	domain
DDE_Tnp_IS1595	PF12762.7	gi|408404458|ref|YP_006862441.1|	-	0.0031	17.5	0.2	0.0044	17.0	0.0	1.5	2	0	0	2	2	2	1	ISXO2-like	transposase	domain
EamA	PF00892.20	gi|408404460|ref|YP_006862443.1|	-	1.8e-18	67.0	35.3	2.9e-10	40.5	20.4	2.2	2	0	0	2	2	2	2	EamA-like	transporter	family
TPT	PF03151.16	gi|408404460|ref|YP_006862443.1|	-	0.03	13.7	13.9	0.013	14.9	6.8	2.7	2	1	0	3	3	3	0	Triose-phosphate	Transporter	family
DUF3273	PF11677.8	gi|408404461|ref|YP_006862444.1|	-	0.026	13.8	0.6	0.03	13.6	0.6	1.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3273)
DUF3975	PF13126.6	gi|408404462|ref|YP_006862445.1|	-	0.022	15.2	0.3	0.031	14.7	0.3	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3975)
DUF3175	PF11373.8	gi|408404463|ref|YP_006862446.1|	-	2.8e-10	40.2	0.4	4.9e-10	39.4	0.4	1.4	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF3175)
tRNA_int_endo	PF01974.17	gi|408404466|ref|YP_006862449.1|	-	1.4e-19	69.9	0.3	3e-19	68.9	0.3	1.5	1	0	0	1	1	1	1	tRNA	intron	endonuclease,	catalytic	C-terminal	domain
tRNA_int_endo_N	PF02778.14	gi|408404466|ref|YP_006862449.1|	-	1.4e-06	27.9	0.0	2.7e-06	26.9	0.0	1.5	1	0	0	1	1	1	1	tRNA	intron	endonuclease,	N-terminal	domain
tRNA_int_end_N2	PF12928.7	gi|408404466|ref|YP_006862449.1|	-	0.14	12.4	0.0	0.43	10.8	0.0	1.8	2	0	0	2	2	2	0	tRNA-splicing	endonuclease	subunit	sen54	N-term
Ribosomal_L16	PF00252.18	gi|408404467|ref|YP_006862450.1|	-	1.8e-29	102.4	0.3	2.1e-29	102.2	0.3	1.0	1	0	0	1	1	1	1	Ribosomal	protein	L16p/L10e
DUF929	PF06053.11	gi|408404468|ref|YP_006862451.1|	-	2e-24	86.3	0.0	8.3e-23	81.0	0.0	2.0	1	1	0	1	1	1	1	Domain	of	unknown	function	(DUF929)
Occludin_ELL	PF07303.13	gi|408404469|ref|YP_006862452.1|	-	0.0012	19.5	0.2	0.0013	19.4	0.2	1.1	1	0	0	1	1	1	1	Occludin	homology	domain
DUF4686	PF15742.5	gi|408404469|ref|YP_006862452.1|	-	0.0014	17.9	1.0	0.0016	17.6	1.0	1.0	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4686)
HTH_Tnp_Tc3_1	PF11427.8	gi|408404469|ref|YP_006862452.1|	-	0.014	15.2	0.0	0.019	14.8	0.0	1.2	1	0	0	1	1	1	0	Tc3	transposase
DUF4407	PF14362.6	gi|408404469|ref|YP_006862452.1|	-	0.043	13.2	0.6	0.043	13.2	0.6	1.0	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4407)
KxDL	PF10241.9	gi|408404469|ref|YP_006862452.1|	-	0.047	14.0	1.0	0.058	13.7	1.0	1.1	1	0	0	1	1	1	0	Uncharacterized	conserved	protein
CpxA_peri	PF16527.5	gi|408404469|ref|YP_006862452.1|	-	0.07	13.5	0.2	0.076	13.4	0.2	1.0	1	0	0	1	1	1	0	Two-component	sensor	protein	CpxA,	periplasmic	domain
Chordopox_A15	PF05846.12	gi|408404470|ref|YP_006862453.1|	-	0.16	12.2	0.0	0.19	12.0	0.0	1.2	1	0	0	1	1	1	0	Chordopoxvirus	A15	protein
Arginase	PF00491.21	gi|408404473|ref|YP_006862456.1|	-	3e-09	36.8	0.0	3.3e-09	36.6	0.0	1.0	1	0	0	1	1	1	1	Arginase	family
PS-DH	PF14765.6	gi|408404474|ref|YP_006862457.1|	-	0.027	13.7	0.1	0.029	13.6	0.1	1.0	1	0	0	1	1	1	0	Polyketide	synthase	dehydratase
Cation_efflux	PF01545.21	gi|408404475|ref|YP_006862458.1|	-	4e-29	101.8	12.0	4.8e-29	101.5	12.0	1.1	1	0	0	1	1	1	1	Cation	efflux	family
ZT_dimer	PF16916.5	gi|408404475|ref|YP_006862458.1|	-	0.00027	21.0	0.2	0.00055	20.0	0.2	1.4	1	0	0	1	1	1	1	Dimerisation	domain	of	Zinc	Transporter
PGK	PF00162.19	gi|408404476|ref|YP_006862459.1|	-	5.2e-133	443.7	0.0	6.3e-133	443.4	0.0	1.0	1	0	0	1	1	1	1	Phosphoglycerate	kinase
SGL	PF08450.12	gi|408404478|ref|YP_006862461.1|	-	1.9e-08	34.2	0.4	0.046	13.3	0.0	4.7	4	1	1	5	5	5	3	SMP-30/Gluconolactonase/LRE-like	region
NHL	PF01436.21	gi|408404478|ref|YP_006862461.1|	-	0.0014	18.6	2.5	0.025	14.6	0.1	3.9	5	0	0	5	5	5	1	NHL	repeat
fn3_5	PF06280.12	gi|408404478|ref|YP_006862461.1|	-	0.11	13.1	0.0	0.95	10.2	0.0	2.4	1	1	0	1	1	1	0	Fn3-like	domain
DUF3872	PF12988.7	gi|408404478|ref|YP_006862461.1|	-	0.13	12.1	0.0	0.24	11.2	0.0	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function,	B.	Theta	Gene	description	(DUF3872)
Reg_prop	PF07494.11	gi|408404478|ref|YP_006862461.1|	-	9.1	6.9	9.7	60	4.4	0.0	5.1	6	0	0	6	6	6	0	Two	component	regulator	propeller
EamA	PF00892.20	gi|408404479|ref|YP_006862462.1|	-	6.5e-41	139.7	39.9	2.2e-21	76.4	15.5	2.0	2	0	0	2	2	2	2	EamA-like	transporter	family
TPT	PF03151.16	gi|408404479|ref|YP_006862462.1|	-	2.2e-05	24.0	16.9	0.0012	18.2	4.9	2.1	1	1	1	2	2	2	2	Triose-phosphate	Transporter	family
TMEM234	PF10639.9	gi|408404479|ref|YP_006862462.1|	-	0.074	13.1	0.4	0.074	13.1	0.4	3.6	3	1	1	4	4	4	0	Putative	transmembrane	family	234
PTH2	PF01981.16	gi|408404480|ref|YP_006862463.1|	-	3e-40	137.1	0.1	3.3e-40	137.0	0.1	1.0	1	0	0	1	1	1	1	Peptidyl-tRNA	hydrolase	PTH2
PhnG	PF06754.12	gi|408404480|ref|YP_006862463.1|	-	0.0083	16.1	0.1	0.01	15.8	0.1	1.1	1	0	0	1	1	1	1	Phosphonate	metabolism	protein	PhnG
DFF40	PF09230.10	gi|408404480|ref|YP_006862463.1|	-	0.2	11.2	0.0	0.23	11.0	0.0	1.1	1	0	0	1	1	1	0	DNA	fragmentation	factor	40	kDa
FAD_binding_3	PF01494.19	gi|408404481|ref|YP_006862464.1|	-	2.7e-10	40.0	1.4	5.4e-05	22.6	0.3	2.4	2	1	0	2	2	2	2	FAD	binding	domain
DAO	PF01266.24	gi|408404481|ref|YP_006862464.1|	-	3.2e-05	23.7	7.3	0.11	12.1	3.7	2.7	1	1	1	3	3	3	2	FAD	dependent	oxidoreductase
FAD_oxidored	PF12831.7	gi|408404481|ref|YP_006862464.1|	-	4.9e-05	22.9	0.3	7.6e-05	22.2	0.3	1.4	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
HI0933_like	PF03486.14	gi|408404481|ref|YP_006862464.1|	-	0.00014	20.7	0.7	0.0049	15.6	0.3	2.2	2	0	0	2	2	2	1	HI0933-like	protein
FAD_binding_2	PF00890.24	gi|408404481|ref|YP_006862464.1|	-	0.003	16.7	4.1	0.006	15.7	4.1	1.5	1	0	0	1	1	1	1	FAD	binding	domain
Thi4	PF01946.17	gi|408404481|ref|YP_006862464.1|	-	0.0097	15.2	1.9	0.021	14.1	1.9	1.5	1	0	0	1	1	1	1	Thi4	family
Lycopene_cycl	PF05834.12	gi|408404481|ref|YP_006862464.1|	-	0.049	12.7	3.2	4.8	6.1	0.0	3.0	3	0	0	3	3	3	0	Lycopene	cyclase	protein
Pyr_redox_2	PF07992.14	gi|408404481|ref|YP_006862464.1|	-	0.058	12.6	1.3	0.16	11.2	1.0	1.8	1	1	1	2	2	2	0	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_binding_8	PF13450.6	gi|408404481|ref|YP_006862464.1|	-	0.37	11.1	4.4	0.2	11.9	0.8	2.4	3	0	0	3	3	3	0	NAD(P)-binding	Rossmann-like	domain
DUF1610	PF07754.11	gi|408404482|ref|YP_006862465.1|	-	8.1e-07	28.9	5.9	8.1e-07	28.9	5.9	1.7	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF1610)
DZR	PF12773.7	gi|408404482|ref|YP_006862465.1|	-	0.08	13.0	13.2	0.4	10.7	4.5	2.3	1	1	1	2	2	2	0	Double	zinc	ribbon
DUF2321	PF10083.9	gi|408404482|ref|YP_006862465.1|	-	0.18	11.4	4.6	0.27	10.8	4.6	1.3	1	1	0	1	1	1	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2321)
Zn_ribbon_SprT	PF17283.2	gi|408404482|ref|YP_006862465.1|	-	0.28	11.1	16.3	1.5	8.8	1.6	4.0	4	0	0	4	4	4	0	SprT-like	zinc	ribbon	domain
zf-B_box	PF00643.24	gi|408404482|ref|YP_006862465.1|	-	0.33	11.1	9.3	2.8	8.2	5.7	2.6	2	1	0	2	2	2	0	B-box	zinc	finger
zf-CHY	PF05495.12	gi|408404482|ref|YP_006862465.1|	-	0.34	11.4	10.0	1.2	9.6	2.1	2.1	2	0	0	2	2	2	0	CHY	zinc	finger
C1_2	PF03107.16	gi|408404482|ref|YP_006862465.1|	-	0.63	10.4	15.2	0.81	10.1	6.6	2.1	1	1	1	2	2	2	0	C1	domain
A2L_zn_ribbon	PF08792.10	gi|408404482|ref|YP_006862465.1|	-	4.4	7.2	12.6	1	9.1	4.7	3.1	3	1	0	3	3	3	0	A2L	zinc	ribbon	domain
EF1_GNE	PF00736.19	gi|408404483|ref|YP_006862466.1|	-	2.6e-18	66.0	0.2	3.2e-18	65.7	0.2	1.0	1	0	0	1	1	1	1	EF-1	guanine	nucleotide	exchange	domain
AAA	PF00004.29	gi|408404484|ref|YP_006862467.1|	-	6.4e-91	301.6	0.0	6.8e-47	159.2	0.0	2.8	2	0	0	2	2	2	2	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_lid_3	PF17862.1	gi|408404484|ref|YP_006862467.1|	-	1.2e-31	108.2	2.1	3.7e-15	55.4	0.0	2.7	2	0	0	2	2	2	2	AAA+	lid	domain
CDC48_N	PF02359.18	gi|408404484|ref|YP_006862467.1|	-	4.2e-27	94.1	0.7	1.4e-26	92.5	0.7	1.9	1	0	0	1	1	1	1	Cell	division	protein	48	(CDC48),	N-terminal	domain
RuvB_N	PF05496.12	gi|408404484|ref|YP_006862467.1|	-	3e-14	53.1	0.0	8.6e-07	28.8	0.0	3.1	3	0	0	3	3	3	2	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
AAA_2	PF07724.14	gi|408404484|ref|YP_006862467.1|	-	5.4e-14	52.7	0.0	1.8e-07	31.5	0.0	2.4	2	0	0	2	2	2	2	AAA	domain	(Cdc48	subfamily)
AAA_5	PF07728.14	gi|408404484|ref|YP_006862467.1|	-	9.3e-13	48.4	0.2	0.00024	21.1	0.0	4.6	3	2	0	3	3	3	2	AAA	domain	(dynein-related	subfamily)
AAA_16	PF13191.6	gi|408404484|ref|YP_006862467.1|	-	3.5e-12	47.0	0.2	0.00073	20.0	0.0	4.5	2	2	1	3	3	3	2	AAA	ATPase	domain
AAA_14	PF13173.6	gi|408404484|ref|YP_006862467.1|	-	2.7e-10	40.4	0.0	1.4e-05	25.2	0.0	2.5	2	0	0	2	2	2	2	AAA	domain
AAA_22	PF13401.6	gi|408404484|ref|YP_006862467.1|	-	3e-10	40.5	0.8	0.021	15.1	0.0	4.5	2	2	1	4	4	4	2	AAA	domain
AAA_33	PF13671.6	gi|408404484|ref|YP_006862467.1|	-	1.5e-09	38.1	0.0	0.0012	19.0	0.0	2.5	2	0	0	2	2	2	2	AAA	domain
AAA_25	PF13481.6	gi|408404484|ref|YP_006862467.1|	-	2.5e-08	33.8	0.1	0.091	12.3	0.0	4.4	4	0	0	4	4	4	1	AAA	domain
AAA_28	PF13521.6	gi|408404484|ref|YP_006862467.1|	-	3.1e-08	34.0	0.0	0.012	15.8	0.0	2.5	2	0	0	2	2	2	2	AAA	domain
RNA_helicase	PF00910.22	gi|408404484|ref|YP_006862467.1|	-	9.4e-08	32.4	0.0	0.018	15.4	0.0	2.6	2	0	0	2	2	2	2	RNA	helicase
TIP49	PF06068.13	gi|408404484|ref|YP_006862467.1|	-	3e-07	30.0	0.2	0.014	14.6	0.0	2.6	3	0	0	3	3	2	2	TIP49	P-loop	domain
Mg_chelatase	PF01078.21	gi|408404484|ref|YP_006862467.1|	-	3.1e-07	30.0	0.4	0.018	14.5	0.1	2.4	2	0	0	2	2	2	2	Magnesium	chelatase,	subunit	ChlI
ATPase	PF06745.13	gi|408404484|ref|YP_006862467.1|	-	4e-07	29.6	0.1	0.014	14.7	0.0	3.4	2	1	1	3	3	3	2	KaiC
AAA_18	PF13238.6	gi|408404484|ref|YP_006862467.1|	-	5.2e-07	30.3	0.0	0.051	14.1	0.0	2.8	2	0	0	2	2	2	2	AAA	domain
CDC48_2	PF02933.17	gi|408404484|ref|YP_006862467.1|	-	6.3e-07	29.1	0.1	1.5e-06	27.9	0.1	1.7	1	0	0	1	1	1	1	Cell	division	protein	48	(CDC48),	domain	2
IstB_IS21	PF01695.17	gi|408404484|ref|YP_006862467.1|	-	7.2e-07	29.1	0.0	0.015	15.0	0.0	2.4	2	0	0	2	2	2	2	IstB-like	ATP	binding	protein
ABC_tran	PF00005.27	gi|408404484|ref|YP_006862467.1|	-	2.9e-06	27.8	0.0	0.15	12.6	0.0	3.1	3	0	0	3	3	2	2	ABC	transporter
AAA_24	PF13479.6	gi|408404484|ref|YP_006862467.1|	-	5.5e-06	26.2	0.0	0.11	12.2	0.0	2.8	3	0	0	3	3	3	2	AAA	domain
ATPase_2	PF01637.18	gi|408404484|ref|YP_006862467.1|	-	6.4e-06	26.2	0.0	0.013	15.4	0.0	3.2	2	1	1	3	3	3	1	ATPase	domain	predominantly	from	Archaea
DUF2075	PF09848.9	gi|408404484|ref|YP_006862467.1|	-	1.5e-05	24.4	0.0	0.061	12.6	0.0	2.9	2	1	0	2	2	2	2	Uncharacterized	conserved	protein	(DUF2075)
Sigma54_activat	PF00158.26	gi|408404484|ref|YP_006862467.1|	-	2.3e-05	24.1	0.1	0.42	10.3	0.0	3.5	3	1	0	3	3	3	2	Sigma-54	interaction	domain
Zeta_toxin	PF06414.12	gi|408404484|ref|YP_006862467.1|	-	4.9e-05	22.7	0.0	0.13	11.5	0.0	2.6	2	0	0	2	2	2	2	Zeta	toxin
NACHT	PF05729.12	gi|408404484|ref|YP_006862467.1|	-	7.2e-05	22.8	0.2	1.5	8.7	0.0	3.6	3	0	0	3	3	3	2	NACHT	domain
AAA_7	PF12775.7	gi|408404484|ref|YP_006862467.1|	-	9.3e-05	22.0	0.0	0.5	9.9	0.0	2.6	2	1	0	2	2	2	2	P-loop	containing	dynein	motor	region
PhoH	PF02562.16	gi|408404484|ref|YP_006862467.1|	-	0.00019	21.0	0.2	0.33	10.4	0.0	3.1	3	0	0	3	3	3	1	PhoH-like	protein
Viral_helicase1	PF01443.18	gi|408404484|ref|YP_006862467.1|	-	0.00019	21.2	0.0	0.77	9.4	0.0	2.3	2	0	0	2	2	2	2	Viral	(Superfamily	1)	RNA	helicase
DUF815	PF05673.13	gi|408404484|ref|YP_006862467.1|	-	0.0002	20.6	0.0	0.39	9.8	0.0	2.3	2	0	0	2	2	2	2	Protein	of	unknown	function	(DUF815)
Rad17	PF03215.15	gi|408404484|ref|YP_006862467.1|	-	0.00021	21.3	0.1	1.1	9.1	0.0	3.3	2	1	1	3	3	3	1	Rad17	P-loop	domain
Parvo_NS1	PF01057.17	gi|408404484|ref|YP_006862467.1|	-	0.00033	19.8	0.1	0.45	9.6	0.0	2.3	2	0	0	2	2	2	2	Parvovirus	non-structural	protein	NS1
TsaE	PF02367.17	gi|408404484|ref|YP_006862467.1|	-	0.00039	20.4	0.0	1.2	9.1	0.0	2.4	2	0	0	2	2	2	2	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
Sigma54_activ_2	PF14532.6	gi|408404484|ref|YP_006862467.1|	-	0.00039	20.5	0.0	0.62	10.2	0.0	2.4	2	0	0	2	2	2	1	Sigma-54	interaction	domain
AAA_3	PF07726.11	gi|408404484|ref|YP_006862467.1|	-	0.00049	20.0	0.0	0.82	9.5	0.0	2.7	2	1	0	2	2	2	2	ATPase	family	associated	with	various	cellular	activities	(AAA)
Bac_DnaA	PF00308.18	gi|408404484|ref|YP_006862467.1|	-	0.0007	19.5	0.0	0.25	11.2	0.0	2.7	2	0	0	2	2	2	1	Bacterial	dnaA	protein
AAA_17	PF13207.6	gi|408404484|ref|YP_006862467.1|	-	0.001	19.5	0.0	2.3	8.7	0.0	3.0	2	1	0	2	2	2	1	AAA	domain
ATP-synt_ab	PF00006.25	gi|408404484|ref|YP_006862467.1|	-	0.0014	18.4	0.0	1.9	8.1	0.0	2.4	2	0	0	2	2	2	2	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
DEAD	PF00270.29	gi|408404484|ref|YP_006862467.1|	-	0.002	17.9	0.1	0.92	9.3	0.0	3.4	2	2	1	4	4	4	1	DEAD/DEAH	box	helicase
AAA_11	PF13086.6	gi|408404484|ref|YP_006862467.1|	-	0.021	14.6	0.0	0.53	10.0	0.0	2.4	2	0	0	2	2	2	0	AAA	domain
DAP3	PF10236.9	gi|408404484|ref|YP_006862467.1|	-	0.024	13.8	0.0	4.2	6.5	0.0	2.2	2	0	0	2	2	2	0	Mitochondrial	ribosomal	death-associated	protein	3
NB-ARC	PF00931.22	gi|408404484|ref|YP_006862467.1|	-	0.036	13.3	0.0	3.6	6.7	0.0	2.3	2	0	0	2	2	2	0	NB-ARC	domain
SKI	PF01202.22	gi|408404484|ref|YP_006862467.1|	-	0.044	13.9	0.1	5.4	7.1	0.0	3.1	3	0	0	3	3	3	0	Shikimate	kinase
AAA_19	PF13245.6	gi|408404484|ref|YP_006862467.1|	-	0.056	13.8	0.8	12	6.2	0.1	2.8	3	0	0	3	3	2	0	AAA	domain
AAA_30	PF13604.6	gi|408404484|ref|YP_006862467.1|	-	0.072	12.8	0.1	2.5	7.8	0.1	2.5	2	0	0	2	2	2	0	AAA	domain
UFD1	PF03152.14	gi|408404484|ref|YP_006862467.1|	-	0.13	11.7	0.0	0.21	11.0	0.0	1.4	1	0	0	1	1	1	0	Ubiquitin	fusion	degradation	protein	UFD1
SRPRB	PF09439.10	gi|408404484|ref|YP_006862467.1|	-	0.14	11.6	0.0	17	4.8	0.0	2.6	2	0	0	2	2	2	0	Signal	recognition	particle	receptor	beta	subunit
IPT	PF01745.16	gi|408404484|ref|YP_006862467.1|	-	0.17	11.2	0.1	1.3	8.3	0.0	2.2	2	0	0	2	2	2	0	Isopentenyl	transferase
Hydin_ADK	PF17213.3	gi|408404484|ref|YP_006862467.1|	-	0.57	10.4	2.1	42	4.3	0.0	3.3	4	0	0	4	4	3	0	Hydin	Adenylate	kinase-like	domain
CE2_N	PF17996.1	gi|408404485|ref|YP_006862468.1|	-	0.0014	18.6	0.2	3.1	7.8	0.0	2.8	2	1	1	3	3	3	2	Carbohydrate	esterase	2	N-terminal
UbiA	PF01040.18	gi|408404487|ref|YP_006862470.1|	-	6.5e-53	179.6	26.8	8.2e-53	179.3	26.4	1.4	1	1	0	1	1	1	1	UbiA	prenyltransferase	family
DUF373	PF04123.13	gi|408404487|ref|YP_006862470.1|	-	7.2	6.0	9.1	3.4	7.0	0.7	2.2	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF373)
DUF3338	PF11819.8	gi|408404488|ref|YP_006862471.1|	-	0.072	13.1	0.0	0.079	12.9	0.0	1.0	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3338)
DegS	PF05384.11	gi|408404489|ref|YP_006862472.1|	-	0.0064	16.0	2.4	0.022	14.2	0.8	2.0	2	0	0	2	2	2	1	Sensor	protein	DegS
Chlorosome_CsmC	PF11098.8	gi|408404489|ref|YP_006862472.1|	-	0.02	14.9	1.3	0.16	11.9	0.2	2.3	2	1	0	2	2	2	0	Chlorosome	envelope	protein	C
Atg14	PF10186.9	gi|408404489|ref|YP_006862472.1|	-	0.022	13.9	0.2	0.024	13.7	0.2	1.2	1	0	0	1	1	1	0	Vacuolar	sorting	38	and	autophagy-related	subunit	14
DUF948	PF06103.11	gi|408404489|ref|YP_006862472.1|	-	0.03	14.6	2.0	0.39	11.0	0.2	2.3	2	0	0	2	2	2	0	Bacterial	protein	of	unknown	function	(DUF948)
NPV_P10	PF05531.12	gi|408404489|ref|YP_006862472.1|	-	0.047	14.2	0.1	0.094	13.2	0.1	1.4	1	0	0	1	1	1	0	Nucleopolyhedrovirus	P10	protein
DUF3300	PF11737.8	gi|408404489|ref|YP_006862472.1|	-	0.061	12.9	3.6	0.097	12.2	0.2	2.0	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF3300)
Apolipoprotein	PF01442.18	gi|408404489|ref|YP_006862472.1|	-	0.077	12.9	3.8	0.21	11.4	3.8	1.7	1	1	0	1	1	1	0	Apolipoprotein	A1/A4/E	domain
DUF1100	PF06500.11	gi|408404489|ref|YP_006862472.1|	-	0.095	11.5	1.4	0.11	11.2	1.4	1.1	1	0	0	1	1	1	0	Alpha/beta	hydrolase	of	unknown	function	(DUF1100)
AAA_13	PF13166.6	gi|408404489|ref|YP_006862472.1|	-	0.1	11.2	2.8	0.054	12.2	0.6	1.5	2	0	0	2	2	2	0	AAA	domain
YtxH	PF12732.7	gi|408404489|ref|YP_006862472.1|	-	0.13	12.8	2.6	12	6.6	2.6	3.0	1	1	0	1	1	1	0	YtxH-like	protein
ApoLp-III	PF07464.11	gi|408404489|ref|YP_006862472.1|	-	0.13	12.3	3.8	0.11	12.6	1.0	2.1	2	0	0	2	2	2	0	Apolipophorin-III	precursor	(apoLp-III)
DUF883	PF05957.13	gi|408404489|ref|YP_006862472.1|	-	0.37	11.4	8.3	2.6	8.7	1.3	2.9	2	1	1	3	3	3	0	Bacterial	protein	of	unknown	function	(DUF883)
APG17	PF04108.12	gi|408404489|ref|YP_006862472.1|	-	0.57	9.2	4.1	0.19	10.8	1.6	1.4	2	0	0	2	2	2	0	Autophagy	protein	Apg17
Phasin_2	PF09361.10	gi|408404489|ref|YP_006862472.1|	-	0.74	10.1	10.9	7.9	6.8	0.4	2.8	2	1	0	2	2	2	0	Phasin	protein
phiKZ_IP	PF12699.7	gi|408404489|ref|YP_006862472.1|	-	1.8	7.6	7.1	0.23	10.6	1.6	1.9	2	0	0	2	2	2	0	phiKZ-like	phage	internal	head	proteins
DUF1484	PF07363.11	gi|408404489|ref|YP_006862472.1|	-	2.9	9.0	5.7	17	6.5	0.4	2.7	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF1484)
DUF1451	PF07295.11	gi|408404489|ref|YP_006862472.1|	-	9.6	6.2	6.9	4.6	7.3	3.5	1.9	2	0	0	2	2	2	0	Zinc-ribbon	containing	domain
DUF2795	PF11387.8	gi|408404490|ref|YP_006862473.1|	-	3.4e-12	46.3	0.0	5.6e-12	45.7	0.0	1.4	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF2795)
PRC	PF05239.16	gi|408404491|ref|YP_006862474.1|	-	0.0029	17.7	0.0	0.0042	17.1	0.0	1.3	1	0	0	1	1	1	1	PRC-barrel	domain
zf-C2H2_4	PF13894.6	gi|408404491|ref|YP_006862474.1|	-	0.0079	16.9	0.1	0.014	16.2	0.1	1.4	1	0	0	1	1	1	1	C2H2-type	zinc	finger
zf-C2H2_6	PF13912.6	gi|408404491|ref|YP_006862474.1|	-	0.0088	16.0	0.1	0.016	15.2	0.1	1.4	1	0	0	1	1	1	1	C2H2-type	zinc	finger
zf_UBZ	PF18439.1	gi|408404491|ref|YP_006862474.1|	-	0.019	14.6	0.2	0.03	13.9	0.2	1.3	1	0	0	1	1	1	0	Ubiquitin-Binding	Zinc	Finger
zf-C2H2	PF00096.26	gi|408404491|ref|YP_006862474.1|	-	0.045	14.2	0.1	0.076	13.5	0.1	1.4	1	0	0	1	1	1	0	Zinc	finger,	C2H2	type
Copper-bind	PF00127.20	gi|408404492|ref|YP_006862475.1|	-	2.7e-17	63.0	0.8	8e-08	32.6	0.2	2.8	2	1	0	2	2	2	2	Copper	binding	proteins,	plastocyanin/azurin	family
Cupredoxin_1	PF13473.6	gi|408404492|ref|YP_006862475.1|	-	1.6e-13	50.7	0.0	2.4e-06	27.6	0.0	2.5	2	1	0	2	2	2	2	Cupredoxin-like	domain
Endomucin	PF07010.12	gi|408404492|ref|YP_006862475.1|	-	0.038	14.0	8.4	0.057	13.4	8.4	1.2	1	0	0	1	1	1	0	Endomucin
Prok-JAB	PF14464.6	gi|408404493|ref|YP_006862476.1|	-	9.4e-19	67.3	0.0	1.1e-18	67.1	0.0	1.1	1	0	0	1	1	1	1	Prokaryotic	homologs	of	the	JAB	domain
JAB	PF01398.21	gi|408404493|ref|YP_006862476.1|	-	0.023	14.7	0.0	0.03	14.3	0.0	1.3	1	0	0	1	1	1	0	JAB1/Mov34/MPN/PAD-1	ubiquitin	protease
tRNA-synt_2	PF00152.20	gi|408404494|ref|YP_006862477.1|	-	8.5e-83	278.0	0.0	1.2e-82	277.5	0.0	1.2	1	0	0	1	1	1	1	tRNA	synthetases	class	II	(D,	K	and	N)
tRNA_anti-codon	PF01336.25	gi|408404494|ref|YP_006862477.1|	-	3.2e-10	39.8	2.0	6.6e-10	38.8	2.0	1.6	1	0	0	1	1	1	1	OB-fold	nucleic	acid	binding	domain
tRNA-synt_2d	PF01409.20	gi|408404494|ref|YP_006862477.1|	-	0.00045	19.8	0.4	0.064	12.7	0.0	2.4	2	0	0	2	2	2	2	tRNA	synthetases	class	II	core	domain	(F)
KH_5	PF13184.6	gi|408404495|ref|YP_006862478.1|	-	0.0067	16.5	0.2	0.019	15.0	0.0	1.8	2	0	0	2	2	2	1	NusA-like	KH	domain
Response_reg	PF00072.24	gi|408404496|ref|YP_006862479.1|	-	2.3e-07	31.0	0.0	3.1e-07	30.6	0.0	1.2	1	0	0	1	1	1	1	Response	regulator	receiver	domain
DUF3982	PF13138.6	gi|408404496|ref|YP_006862479.1|	-	0.19	11.6	0.2	0.4	10.5	0.2	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3982)
ABC_tran	PF00005.27	gi|408404497|ref|YP_006862480.1|	-	3.3e-28	98.9	0.0	4.9e-28	98.4	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
oligo_HPY	PF08352.12	gi|408404497|ref|YP_006862480.1|	-	1.6e-21	76.6	0.1	2.9e-21	75.7	0.1	1.4	1	0	0	1	1	1	1	Oligopeptide/dipeptide	transporter,	C-terminal	region
AAA_21	PF13304.6	gi|408404497|ref|YP_006862480.1|	-	1.2e-10	41.7	0.4	5e-08	33.1	0.3	2.1	1	1	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
TniB	PF05621.11	gi|408404497|ref|YP_006862480.1|	-	0.00085	18.8	0.2	0.098	12.1	0.2	2.3	2	0	0	2	2	2	1	Bacterial	TniB	protein
SMC_N	PF02463.19	gi|408404497|ref|YP_006862480.1|	-	0.0021	17.5	0.9	0.014	14.9	0.9	2.0	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_22	PF13401.6	gi|408404497|ref|YP_006862480.1|	-	0.0084	16.4	0.8	0.15	12.3	0.8	2.1	1	1	0	1	1	1	1	AAA	domain
ABC_ATPase	PF09818.9	gi|408404497|ref|YP_006862480.1|	-	0.019	13.8	0.3	0.9	8.3	0.1	2.5	2	1	0	2	2	2	0	Predicted	ATPase	of	the	ABC	class
AAA_16	PF13191.6	gi|408404497|ref|YP_006862480.1|	-	0.038	14.4	0.0	0.068	13.5	0.0	1.6	1	1	0	1	1	1	0	AAA	ATPase	domain
AAA_15	PF13175.6	gi|408404497|ref|YP_006862480.1|	-	0.063	13.0	0.2	11	5.5	0.0	2.1	1	1	0	2	2	2	0	AAA	ATPase	domain
AAA_29	PF13555.6	gi|408404497|ref|YP_006862480.1|	-	0.09	12.5	0.0	0.18	11.5	0.0	1.5	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
AAA	PF00004.29	gi|408404497|ref|YP_006862480.1|	-	0.14	12.6	0.3	1.8	9.0	0.3	2.3	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
PRK	PF00485.18	gi|408404497|ref|YP_006862480.1|	-	0.14	11.9	0.0	0.22	11.2	0.0	1.3	1	0	0	1	1	1	0	Phosphoribulokinase	/	Uridine	kinase	family
DUF99	PF01949.16	gi|408404497|ref|YP_006862480.1|	-	0.16	11.3	0.1	0.95	8.9	0.0	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	DUF99
Ion_trans	PF00520.31	gi|408404498|ref|YP_006862481.1|	-	1.4e-46	158.7	11.0	1.7e-46	158.5	11.0	1.0	1	0	0	1	1	1	1	Ion	transport	protein
PKD_channel	PF08016.12	gi|408404498|ref|YP_006862481.1|	-	1.4e-11	43.8	8.3	4.4e-09	35.5	8.1	2.1	1	1	1	2	2	2	2	Polycystin	cation	channel
SesA	PF17107.5	gi|408404498|ref|YP_006862481.1|	-	0.0039	17.4	0.2	0.0082	16.3	0.2	1.5	1	0	0	1	1	1	1	N-terminal	domain	on	NACHT_NTPase	and	P-loop	NTPases
Renin_r	PF07850.14	gi|408404498|ref|YP_006862481.1|	-	0.37	11.4	0.2	0.37	11.4	0.2	2.1	2	0	0	2	2	2	0	Renin	receptor-like	protein
Zn_peptidase_2	PF04298.12	gi|408404498|ref|YP_006862481.1|	-	0.37	10.2	3.7	4.9	6.5	0.0	2.4	2	0	0	2	2	2	0	Putative	neutral	zinc	metallopeptidase
DUF4446	PF14584.6	gi|408404498|ref|YP_006862481.1|	-	0.4	10.7	0.1	0.4	10.7	0.1	1.8	2	1	1	3	3	3	0	Protein	of	unknown	function	(DUF4446)
TssO	PF17561.2	gi|408404498|ref|YP_006862481.1|	-	0.7	10.0	3.0	5.3	7.1	0.1	2.5	2	0	0	2	2	2	0	Type	VI	secretion	system,	TssO
PNTB_4TM	PF12769.7	gi|408404498|ref|YP_006862481.1|	-	9.6	6.8	9.8	0.98	9.9	1.7	2.7	3	0	0	3	3	3	0	4TM	region	of	pyridine	nucleotide	transhydrogenase,	mitoch
DUF4032	PF13224.6	gi|408404499|ref|YP_006862482.1|	-	0.055	13.3	0.0	0.055	13.3	0.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4032)
UME	PF08064.13	gi|408404499|ref|YP_006862482.1|	-	0.065	13.1	0.0	0.068	13.1	0.0	1.1	1	0	0	1	1	1	0	UME	(NUC010)	domain
Helicase_C_2	PF13307.6	gi|408404501|ref|YP_006862484.1|	-	8.2e-21	74.9	0.0	2.1e-20	73.6	0.0	1.7	1	0	0	1	1	1	1	Helicase	C-terminal	domain
ResIII	PF04851.15	gi|408404501|ref|YP_006862484.1|	-	4.1e-07	30.2	0.1	5.3e-05	23.3	0.0	3.3	2	2	0	2	2	2	1	Type	III	restriction	enzyme,	res	subunit
DEAD_2	PF06733.15	gi|408404501|ref|YP_006862484.1|	-	1.6e-05	24.6	0.3	4.8e-05	23.0	0.0	2.0	2	0	0	2	2	2	1	DEAD_2
DEAD	PF00270.29	gi|408404501|ref|YP_006862484.1|	-	3.5e-05	23.6	0.2	0.17	11.7	0.0	3.1	3	1	0	3	3	3	2	DEAD/DEAH	box	helicase
RuvB_N	PF05496.12	gi|408404501|ref|YP_006862484.1|	-	0.017	14.9	0.0	0.33	10.7	0.0	2.6	3	0	0	3	3	3	0	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
AAA_22	PF13401.6	gi|408404501|ref|YP_006862484.1|	-	0.031	14.6	1.1	2.9	8.2	0.0	3.3	3	1	1	4	4	4	0	AAA	domain
IMS	PF00817.20	gi|408404503|ref|YP_006862486.1|	-	2.7e-42	144.3	0.3	4.7e-42	143.5	0.3	1.4	1	0	0	1	1	1	1	impB/mucB/samB	family
IMS_C	PF11799.8	gi|408404503|ref|YP_006862486.1|	-	4.2e-07	30.7	0.4	7.2e-07	29.9	0.4	1.4	1	0	0	1	1	1	1	impB/mucB/samB	family	C-terminal	domain
IMS_HHH	PF11798.8	gi|408404503|ref|YP_006862486.1|	-	4.9e-05	23.4	0.0	0.0001	22.4	0.0	1.6	1	0	0	1	1	1	1	IMS	family	HHH	motif
HHH_5	PF14520.6	gi|408404503|ref|YP_006862486.1|	-	0.0007	20.2	0.0	0.0043	17.6	0.0	2.2	2	0	0	2	2	2	1	Helix-hairpin-helix	domain
Cdd1	PF11731.8	gi|408404503|ref|YP_006862486.1|	-	0.0021	18.2	0.0	0.0092	16.2	0.0	2.0	2	0	0	2	2	2	1	Pathogenicity	locus
DUF4332	PF14229.6	gi|408404503|ref|YP_006862486.1|	-	0.0031	17.7	0.0	0.016	15.4	0.0	2.2	2	1	0	2	2	2	1	Domain	of	unknown	function	(DUF4332)
DNA_pol_lambd_f	PF10391.9	gi|408404503|ref|YP_006862486.1|	-	0.02	14.7	0.0	0.048	13.5	0.0	1.6	1	0	0	1	1	1	0	Fingers	domain	of	DNA	polymerase	lambda
XPC-binding	PF09280.11	gi|408404504|ref|YP_006862487.1|	-	0.21	11.3	0.0	0.28	10.9	0.0	1.2	1	0	0	1	1	1	0	XPC-binding	domain
Alba	PF01918.21	gi|408404505|ref|YP_006862488.1|	-	1.2e-14	53.8	0.2	1.7e-14	53.4	0.2	1.2	1	0	0	1	1	1	1	Alba
Rpp20	PF12328.8	gi|408404505|ref|YP_006862488.1|	-	0.0031	17.5	1.4	0.028	14.4	0.1	2.1	1	1	1	2	2	2	1	Rpp20	subunit	of	nuclear	RNase	MRP	and	P
LysE	PF01810.18	gi|408404506|ref|YP_006862489.1|	-	7e-20	71.3	17.9	8.1e-20	71.1	17.9	1.0	1	0	0	1	1	1	1	LysE	type	translocator
Radical_SAM	PF04055.21	gi|408404507|ref|YP_006862490.1|	-	3.6e-16	60.0	0.5	6.5e-16	59.2	0.4	1.4	1	1	0	1	1	1	1	Radical	SAM	superfamily
Fer4_14	PF13394.6	gi|408404507|ref|YP_006862490.1|	-	1.3e-06	28.6	0.5	3.6e-06	27.1	0.4	1.8	2	0	0	2	2	2	1	4Fe-4S	single	cluster	domain
Fer4_12	PF13353.6	gi|408404507|ref|YP_006862490.1|	-	1.3e-05	25.5	0.1	2.8e-05	24.4	0.1	1.5	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
DUF2452	PF10504.9	gi|408404508|ref|YP_006862491.1|	-	0.0091	15.5	0.0	0.011	15.2	0.0	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF2452)
APG6_N	PF17675.1	gi|408404508|ref|YP_006862491.1|	-	0.043	14.3	0.5	0.057	13.9	0.5	1.1	1	0	0	1	1	1	0	Apg6	coiled-coil	region
DUF4533	PF15047.6	gi|408404508|ref|YP_006862491.1|	-	0.073	12.6	0.0	0.073	12.6	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF4533)
Ufd2P_core	PF10408.9	gi|408404508|ref|YP_006862491.1|	-	0.11	11.1	0.1	0.12	10.9	0.1	1.0	1	0	0	1	1	1	0	Ubiquitin	elongating	factor	core
tRNA-synt_1e	PF01406.19	gi|408404509|ref|YP_006862492.1|	-	2.4e-72	243.8	0.0	5e-72	242.8	0.0	1.4	1	1	1	2	2	2	1	tRNA	synthetases	class	I	(C)	catalytic	domain
tRNA-synt_1g	PF09334.11	gi|408404509|ref|YP_006862492.1|	-	1.1e-14	54.0	0.0	5.9e-07	28.6	0.1	2.1	2	0	0	2	2	2	2	tRNA	synthetases	class	I	(M)
tRNA-synt_1	PF00133.22	gi|408404509|ref|YP_006862492.1|	-	2.2e-08	32.9	0.0	4.4e-08	31.8	0.0	1.5	2	0	0	2	2	2	1	tRNA	synthetases	class	I	(I,	L,	M	and	V)
tRNA-synt_1f	PF01921.18	gi|408404509|ref|YP_006862492.1|	-	4.8e-06	25.7	0.0	0.00032	19.8	0.0	2.1	2	0	0	2	2	2	2	tRNA	synthetases	class	I	(K)
tRNA-synt_1c	PF00749.21	gi|408404509|ref|YP_006862492.1|	-	4e-05	22.7	0.1	0.0023	16.9	0.0	2.8	2	1	0	2	2	2	1	tRNA	synthetases	class	I	(E	and	Q),	catalytic	domain
DALR_2	PF09190.11	gi|408404509|ref|YP_006862492.1|	-	0.017	15.6	0.0	0.044	14.3	0.0	1.7	1	0	0	1	1	1	0	DALR	domain
Acetyltransf_10	PF13673.7	gi|408404510|ref|YP_006862493.1|	-	0.00019	21.3	0.0	0.00032	20.6	0.0	1.3	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_7	PF13508.7	gi|408404510|ref|YP_006862493.1|	-	0.00023	21.5	0.0	0.0012	19.3	0.0	2.0	2	0	0	2	2	2	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_1	PF00583.25	gi|408404510|ref|YP_006862493.1|	-	0.012	15.9	0.0	0.021	15.0	0.0	1.4	1	0	0	1	1	1	0	Acetyltransferase	(GNAT)	family
Inos-1-P_synth	PF01658.17	gi|408404512|ref|YP_006862495.1|	-	2.7e-26	92.0	0.0	4.6e-26	91.2	0.0	1.4	1	0	0	1	1	1	1	Myo-inositol-1-phosphate	synthase
NAD_binding_5	PF07994.12	gi|408404512|ref|YP_006862495.1|	-	0.02	14.3	0.0	0.15	11.5	0.0	2.2	1	1	2	3	3	3	0	Myo-inositol-1-phosphate	synthase
SMC_N	PF02463.19	gi|408404513|ref|YP_006862496.1|	-	8e-63	211.8	0.0	2.6e-62	210.1	0.0	1.9	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
SMC_hinge	PF06470.13	gi|408404513|ref|YP_006862496.1|	-	3.2e-13	50.0	0.2	1.3e-12	48.1	0.0	2.2	2	0	0	2	2	1	1	SMC	proteins	Flexible	Hinge	Domain
AAA_21	PF13304.6	gi|408404513|ref|YP_006862496.1|	-	1.3e-12	48.1	11.4	7.3e-06	26.0	5.4	3.0	2	2	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_15	PF13175.6	gi|408404513|ref|YP_006862496.1|	-	1.8e-10	41.1	28.1	7e-05	22.7	16.7	4.1	2	2	0	2	2	2	2	AAA	ATPase	domain
AAA_23	PF13476.6	gi|408404513|ref|YP_006862496.1|	-	1.1e-09	39.1	31.2	1.1e-09	39.1	31.2	5.7	2	2	0	2	2	1	1	AAA	domain
AAA_29	PF13555.6	gi|408404513|ref|YP_006862496.1|	-	7e-07	28.9	0.1	2e-06	27.4	0.0	1.8	2	0	0	2	2	2	1	P-loop	containing	region	of	AAA	domain
SHE3	PF17078.5	gi|408404513|ref|YP_006862496.1|	-	2.3e-05	24.2	13.8	2.3e-05	24.2	13.8	5.0	3	1	3	6	6	6	1	SWI5-dependent	HO	expression	protein	3
FPP	PF05911.11	gi|408404513|ref|YP_006862496.1|	-	3.2e-05	22.4	20.2	3.2e-05	22.4	20.2	4.2	2	2	1	4	4	4	1	Filament-like	plant	protein,	long	coiled-coil
CENP-F_leu_zip	PF10473.9	gi|408404513|ref|YP_006862496.1|	-	0.0034	17.4	25.7	0.005	16.9	5.2	7.7	3	2	6	9	9	9	2	Leucine-rich	repeats	of	kinetochore	protein	Cenp-F/LEK1
ABC_tran	PF00005.27	gi|408404513|ref|YP_006862496.1|	-	0.0043	17.6	14.4	2.4	8.6	7.3	5.4	3	2	0	3	3	3	2	ABC	transporter
SbcCD_C	PF13558.6	gi|408404513|ref|YP_006862496.1|	-	0.013	15.7	0.0	0.09	13.0	0.0	2.5	2	0	0	2	2	2	0	Putative	exonuclease	SbcCD,	C	subunit
MscS_porin	PF12795.7	gi|408404513|ref|YP_006862496.1|	-	0.022	14.3	64.4	0.034	13.7	19.5	5.1	2	2	2	5	5	5	0	Mechanosensitive	ion	channel	porin	domain
NACHT	PF05729.12	gi|408404513|ref|YP_006862496.1|	-	0.061	13.2	0.0	0.23	11.3	0.0	2.1	1	0	0	1	1	1	0	NACHT	domain
Spc7	PF08317.11	gi|408404513|ref|YP_006862496.1|	-	0.071	12.0	83.7	0.067	12.1	6.9	6.6	2	2	5	7	7	7	0	Spc7	kinetochore	protein
NPV_P10	PF05531.12	gi|408404513|ref|YP_006862496.1|	-	4	8.0	15.8	1.5	9.4	0.1	5.9	4	2	1	5	5	5	0	Nucleopolyhedrovirus	P10	protein
Cation_efflux	PF01545.21	gi|408404514|ref|YP_006862497.1|	-	8.2e-26	91.0	14.4	1.1e-25	90.6	14.4	1.1	1	0	0	1	1	1	1	Cation	efflux	family
ZT_dimer	PF16916.5	gi|408404514|ref|YP_006862497.1|	-	0.00017	21.6	0.3	0.00029	20.9	0.3	1.4	1	0	0	1	1	1	1	Dimerisation	domain	of	Zinc	Transporter
Ank	PF00023.30	gi|408404514|ref|YP_006862497.1|	-	0.14	12.6	0.2	0.52	10.8	0.2	2.0	1	0	0	1	1	1	0	Ankyrin	repeat
PADR1	PF08063.12	gi|408404515|ref|YP_006862498.1|	-	0.0033	17.2	0.7	0.0048	16.7	0.7	1.2	1	0	0	1	1	1	1	PADR1	(NUC008)	domain
zinc_ribbon_4	PF13717.6	gi|408404515|ref|YP_006862498.1|	-	0.012	15.5	1.2	3.9	7.5	0.0	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
zinc_ribbon_5	PF13719.6	gi|408404515|ref|YP_006862498.1|	-	0.028	14.2	0.9	4.3	7.2	0.1	2.1	2	0	0	2	2	2	0	zinc-ribbon	domain
Elf1	PF05129.13	gi|408404515|ref|YP_006862498.1|	-	0.061	13.4	0.6	0.077	13.0	0.6	1.2	1	0	0	1	1	1	0	Transcription	elongation	factor	Elf1	like
DUF2387	PF09526.10	gi|408404515|ref|YP_006862498.1|	-	0.068	13.3	0.3	0.072	13.3	0.3	1.2	1	0	0	1	1	1	0	Probable	metal-binding	protein	(DUF2387)
Zn_ribbon_SprT	PF17283.2	gi|408404515|ref|YP_006862498.1|	-	0.2	11.6	3.3	8.7	6.4	1.0	2.2	2	0	0	2	2	2	0	SprT-like	zinc	ribbon	domain
zf-CCHC_5	PF14787.6	gi|408404515|ref|YP_006862498.1|	-	0.24	11.1	3.2	4.1	7.2	0.3	2.5	2	0	0	2	2	2	0	GAG-polyprotein	viral	zinc-finger
Guanylate_cyc	PF00211.20	gi|408404517|ref|YP_006862500.1|	-	0.023	14.3	0.0	0.026	14.2	0.0	1.0	1	0	0	1	1	1	0	Adenylate	and	Guanylate	cyclase	catalytic	domain
DDE_Tnp_1	PF01609.21	gi|408404518|ref|YP_006862501.1|	-	0.0002	21.1	0.0	0.00041	20.0	0.0	1.6	1	1	0	1	1	1	1	Transposase	DDE	domain
DUF1815	PF08844.10	gi|408404518|ref|YP_006862501.1|	-	0.17	11.9	0.2	0.87	9.6	0.1	2.0	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF1815)
DUF543	PF04418.12	gi|408404521|ref|YP_006862504.1|	-	0.047	13.7	9.1	2.6	8.1	0.1	4.8	6	0	0	6	6	6	0	Domain	of	unknown	function	(DUF543)
SNARE_assoc	PF09335.11	gi|408404527|ref|YP_006862510.1|	-	3.8e-15	56.4	3.1	3.8e-15	56.4	3.1	2.3	1	1	1	3	3	3	1	SNARE	associated	Golgi	protein
DUF697	PF05128.12	gi|408404527|ref|YP_006862510.1|	-	0.18	11.5	0.0	0.33	10.7	0.0	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF697)
ProRS-C_1	PF09180.11	gi|408404528|ref|YP_006862511.1|	-	1.8e-25	88.9	0.5	4.5e-25	87.6	0.5	1.7	1	0	0	1	1	1	1	Prolyl-tRNA	synthetase,	C-terminal
tRNA-synt_2b	PF00587.25	gi|408404528|ref|YP_006862511.1|	-	2.9e-18	66.5	0.0	4.3e-18	65.9	0.0	1.2	1	0	0	1	1	1	1	tRNA	synthetase	class	II	core	domain	(G,	H,	P,	S	and	T)
HGTP_anticodon	PF03129.20	gi|408404528|ref|YP_006862511.1|	-	7.9e-18	64.4	0.2	1.7e-17	63.3	0.2	1.6	1	0	0	1	1	1	1	Anticodon	binding	domain
Nre_N	PF04894.12	gi|408404531|ref|YP_006862514.1|	-	6.9e-83	278.6	0.0	1e-82	278.1	0.0	1.1	1	0	0	1	1	1	1	Archaeal	Nre,	N-terminal
Nre_C	PF04895.12	gi|408404531|ref|YP_006862514.1|	-	3.2e-37	126.8	0.0	5.4e-37	126.1	0.0	1.4	1	0	0	1	1	1	1	Archaeal	Nre,	C-terminal
Peptidase_S8	PF00082.22	gi|408404532|ref|YP_006862515.1|	-	2.3e-14	53.4	0.1	4.8e-14	52.3	0.1	1.4	1	0	0	1	1	1	1	Subtilase	family
F5_F8_type_C	PF00754.25	gi|408404532|ref|YP_006862515.1|	-	6.5e-11	42.4	0.1	2.4e-10	40.6	0.1	2.0	2	0	0	2	2	2	1	F5/8	type	C	domain
Big_7	PF17957.1	gi|408404532|ref|YP_006862515.1|	-	3.1e-07	31.1	6.2	0.11	13.3	0.0	5.5	5	1	0	5	5	5	2	Bacterial	Ig	domain
BiPBP_C	PF06832.12	gi|408404532|ref|YP_006862515.1|	-	0.00016	21.6	0.0	0.083	12.9	0.0	3.8	3	1	0	3	3	3	1	Penicillin-Binding	Protein	C-terminus	Family
CTP_transf_like	PF01467.26	gi|408404533|ref|YP_006862516.1|	-	4.9e-10	39.8	0.1	6.8e-10	39.3	0.1	1.2	1	0	0	1	1	1	1	Cytidylyltransferase-like
UPF1_Zn_bind	PF09416.10	gi|408404533|ref|YP_006862516.1|	-	0.14	12.1	0.1	1.1	9.2	0.0	2.1	1	1	1	2	2	2	0	RNA	helicase	(UPF2	interacting	domain)
CTP-dep_RFKase	PF01982.16	gi|408404534|ref|YP_006862517.1|	-	1.5e-42	144.5	0.0	2.1e-42	144.0	0.0	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	DUF120
HTH_27	PF13463.6	gi|408404534|ref|YP_006862517.1|	-	0.0016	18.9	0.1	0.0029	18.1	0.1	1.4	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
HTH_24	PF13412.6	gi|408404534|ref|YP_006862517.1|	-	0.0029	17.1	0.0	0.0058	16.2	0.0	1.5	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
MarR_2	PF12802.7	gi|408404534|ref|YP_006862517.1|	-	0.0032	17.3	0.0	0.0052	16.6	0.0	1.3	1	0	0	1	1	1	1	MarR	family
MarR	PF01047.22	gi|408404534|ref|YP_006862517.1|	-	0.0058	16.5	0.0	0.0098	15.8	0.0	1.4	1	0	0	1	1	1	1	MarR	family
HTH_20	PF12840.7	gi|408404534|ref|YP_006862517.1|	-	0.013	15.5	0.1	0.021	14.9	0.1	1.3	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_34	PF13601.6	gi|408404534|ref|YP_006862517.1|	-	0.015	15.4	0.1	0.03	14.5	0.1	1.5	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
TrmB	PF01978.19	gi|408404534|ref|YP_006862517.1|	-	0.024	14.5	0.0	0.042	13.7	0.0	1.4	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
HTH_Crp_2	PF13545.6	gi|408404534|ref|YP_006862517.1|	-	0.024	14.6	0.0	0.041	13.9	0.0	1.3	1	0	0	1	1	1	0	Crp-like	helix-turn-helix	domain
LexA_DNA_bind	PF01726.16	gi|408404534|ref|YP_006862517.1|	-	0.043	13.6	0.0	0.1	12.4	0.0	1.6	1	0	0	1	1	1	0	LexA	DNA	binding	domain
ETX_MTX2	PF03318.13	gi|408404534|ref|YP_006862517.1|	-	0.076	12.8	0.0	0.12	12.1	0.0	1.2	1	0	0	1	1	1	0	Clostridium	epsilon	toxin	ETX/Bacillus	mosquitocidal	toxin	MTX2
HTH_11	PF08279.12	gi|408404534|ref|YP_006862517.1|	-	0.092	12.7	0.0	0.16	11.9	0.0	1.5	1	0	0	1	1	1	0	HTH	domain
Toprim_4	PF13662.6	gi|408404535|ref|YP_006862518.1|	-	3.5e-09	37.0	0.3	1.2e-08	35.3	0.2	2.0	2	0	0	2	2	2	1	Toprim	domain
Toprim_2	PF13155.6	gi|408404535|ref|YP_006862518.1|	-	2.8e-06	27.7	0.0	9.5e-06	26.0	0.0	1.9	2	0	0	2	2	2	1	Toprim-like
Toprim	PF01751.22	gi|408404535|ref|YP_006862518.1|	-	0.1	12.8	0.1	0.52	10.6	0.1	2.2	1	1	0	1	1	1	0	Toprim	domain
Pap_E4	PF02711.14	gi|408404535|ref|YP_006862518.1|	-	5.8	7.9	7.0	9.9	7.2	7.0	1.3	1	0	0	1	1	1	0	E4	protein
Toprim_4	PF13662.6	gi|408404536|ref|YP_006862519.1|	-	5.4e-06	26.8	0.0	1.6e-05	25.2	0.0	1.7	1	1	0	1	1	1	1	Toprim	domain
Toprim	PF01751.22	gi|408404536|ref|YP_006862519.1|	-	1.2e-05	25.4	0.1	5.7e-05	23.3	0.1	1.9	1	1	0	1	1	1	1	Toprim	domain
Toprim_2	PF13155.6	gi|408404536|ref|YP_006862519.1|	-	0.0017	18.7	0.0	0.0031	17.9	0.0	1.4	1	1	0	1	1	1	1	Toprim-like
YdaS_antitoxin	PF15943.5	gi|408404536|ref|YP_006862519.1|	-	0.062	13.2	0.0	0.1	12.4	0.0	1.3	1	0	0	1	1	1	0	Putative	antitoxin	of	bacterial	toxin-antitoxin	system,	YdaS/YdaT
GATase	PF00117.28	gi|408404537|ref|YP_006862520.1|	-	2.7e-21	76.2	0.0	3.8e-21	75.7	0.0	1.1	1	0	0	1	1	1	1	Glutamine	amidotransferase	class-I
Peptidase_C26	PF07722.13	gi|408404537|ref|YP_006862520.1|	-	9.7e-08	32.0	0.0	3.4e-07	30.3	0.0	1.9	2	0	0	2	2	2	1	Peptidase	C26
DJ-1_PfpI	PF01965.24	gi|408404537|ref|YP_006862520.1|	-	4.4e-05	23.3	0.0	6e-05	22.9	0.0	1.2	1	0	0	1	1	1	1	DJ-1/PfpI	family
GATase_3	PF07685.14	gi|408404537|ref|YP_006862520.1|	-	0.001	18.7	0.0	0.0015	18.2	0.0	1.2	1	0	0	1	1	1	1	CobB/CobQ-like	glutamine	amidotransferase	domain
UPF0180	PF03698.13	gi|408404537|ref|YP_006862520.1|	-	0.0042	17.2	0.0	0.0075	16.4	0.0	1.4	1	0	0	1	1	1	1	Uncharacterised	protein	family	(UPF0180)
HTS	PF04204.16	gi|408404537|ref|YP_006862520.1|	-	0.02	13.8	0.0	0.027	13.4	0.0	1.1	1	0	0	1	1	1	0	Homoserine	O-succinyltransferase
ATP-grasp_5	PF13549.6	gi|408404538|ref|YP_006862521.1|	-	6.5e-58	195.8	0.2	1e-57	195.1	0.2	1.3	1	0	0	1	1	1	1	ATP-grasp	domain
Succ_CoA_lig	PF13607.6	gi|408404538|ref|YP_006862521.1|	-	1.7e-47	160.7	0.1	1.7e-46	157.4	0.1	2.3	2	0	0	2	2	2	1	Succinyl-CoA	ligase	like	flavodoxin	domain
CoA_binding_2	PF13380.6	gi|408404538|ref|YP_006862521.1|	-	6.3e-22	78.3	0.0	2.2e-21	76.5	0.0	2.0	1	0	0	1	1	1	1	CoA	binding	domain
CoA_binding	PF02629.19	gi|408404538|ref|YP_006862521.1|	-	2.3e-10	41.0	3.1	4.1e-10	40.2	0.1	3.0	4	0	0	4	4	4	1	CoA	binding	domain
ATP-grasp	PF02222.22	gi|408404538|ref|YP_006862521.1|	-	0.087	12.4	0.0	0.19	11.3	0.0	1.6	1	0	0	1	1	1	0	ATP-grasp	domain
DUF4505	PF14956.6	gi|408404538|ref|YP_006862521.1|	-	0.12	12.1	0.0	0.25	11.1	0.0	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4505)
UPF0086	PF01868.16	gi|408404539|ref|YP_006862522.1|	-	0.0017	18.2	0.1	2.1	8.3	0.0	2.2	2	0	0	2	2	2	2	Domain	of	unknown	function	UPF0086
Kelch_2	PF07646.15	gi|408404539|ref|YP_006862522.1|	-	0.015	15.3	0.1	3.3	7.8	0.0	2.4	2	0	0	2	2	2	0	Kelch	motif
ResIII	PF04851.15	gi|408404541|ref|YP_006862524.1|	-	3.9e-12	46.5	0.0	8.2e-12	45.5	0.0	1.5	2	0	0	2	2	2	1	Type	III	restriction	enzyme,	res	subunit
DEAD	PF00270.29	gi|408404541|ref|YP_006862524.1|	-	0.00021	21.1	0.0	0.00065	19.5	0.0	1.7	1	1	0	1	1	1	1	DEAD/DEAH	box	helicase
DUF2075	PF09848.9	gi|408404541|ref|YP_006862524.1|	-	0.074	12.3	0.0	0.11	11.7	0.0	1.2	1	0	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2075)
HTH_ParB	PF17762.1	gi|408404541|ref|YP_006862524.1|	-	0.15	11.9	0.0	0.37	10.6	0.0	1.6	1	0	0	1	1	1	0	HTH	domain	found	in	ParB	protein
Flavi_DEAD	PF07652.14	gi|408404541|ref|YP_006862524.1|	-	0.17	11.9	0.0	0.26	11.3	0.0	1.3	1	0	0	1	1	1	0	Flavivirus	DEAD	domain
Helicase_C	PF00271.31	gi|408404543|ref|YP_006862526.1|	-	0.0025	18.2	0.0	0.0034	17.7	0.0	1.2	1	0	0	1	1	1	1	Helicase	conserved	C-terminal	domain
ERCC3_RAD25_C	PF16203.5	gi|408404543|ref|YP_006862526.1|	-	0.011	14.9	0.0	0.012	14.8	0.0	1.1	1	0	0	1	1	1	0	ERCC3/RAD25/XPB	C-terminal	helicase
Phage_integrase	PF00589.22	gi|408404544|ref|YP_006862527.1|	-	2.1e-07	30.9	0.0	5.6e-07	29.5	0.0	1.7	1	0	0	1	1	1	1	Phage	integrase	family
PepSY_TM	PF03929.16	gi|408404545|ref|YP_006862528.1|	-	0.021	14.5	0.1	0.022	14.4	0.1	1.1	1	0	0	1	1	1	0	PepSY-associated	TM	region
TatC	PF00902.18	gi|408404545|ref|YP_006862528.1|	-	0.043	13.6	0.0	0.043	13.6	0.0	1.1	1	0	0	1	1	1	0	Sec-independent	protein	translocase	protein	(TatC)
Ig_4	PF16680.5	gi|408404545|ref|YP_006862528.1|	-	0.058	13.6	0.1	0.082	13.2	0.1	1.2	1	0	0	1	1	1	0	T-cell	surface	glycoprotein	CD3	delta	chain
Peptidase_A24	PF01478.18	gi|408404551|ref|YP_006862534.1|	-	8.3e-12	45.5	7.1	8.3e-12	45.5	7.1	2.2	2	0	0	2	2	2	1	Type	IV	leader	peptidase	family
Arc_PepC_II	PF06847.11	gi|408404551|ref|YP_006862534.1|	-	6.1e-07	29.9	0.0	1.2e-06	28.9	0.0	1.6	1	0	0	1	1	1	1	Archaeal	Peptidase	A24	C-terminus	Type	II
CbiN	PF02553.15	gi|408404551|ref|YP_006862534.1|	-	0.0062	16.5	0.8	0.018	15.0	0.6	2.0	1	1	1	2	2	2	1	Cobalt	transport	protein	component	CbiN
DUF3507	PF12015.8	gi|408404551|ref|YP_006862534.1|	-	0.2	11.4	0.0	0.32	10.7	0.0	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3507)
CLZ	PF16526.5	gi|408404552|ref|YP_006862535.1|	-	0.013	15.8	1.0	1.1	9.7	0.2	2.2	2	0	0	2	2	2	0	C-terminal	leucine	zipper	domain	of	cyclic	nucleotide-gated	channels
K-box	PF01486.17	gi|408404552|ref|YP_006862535.1|	-	0.021	15.0	3.9	0.14	12.4	0.4	2.1	2	0	0	2	2	2	0	K-box	region
XhlA	PF10779.9	gi|408404552|ref|YP_006862535.1|	-	0.026	14.7	0.5	7.1	6.9	0.1	2.1	2	0	0	2	2	2	0	Haemolysin	XhlA
Nod1	PF17114.5	gi|408404552|ref|YP_006862535.1|	-	0.065	13.4	0.2	0.11	12.6	0.1	1.4	2	0	0	2	2	2	0	Gef2-related	medial	cortical	node	protein	Nod1
BLOC1_2	PF10046.9	gi|408404552|ref|YP_006862535.1|	-	0.35	11.2	3.1	1.1	9.6	0.4	2.1	2	0	0	2	2	2	0	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
HATPase_c_3	PF13589.6	gi|408404556|ref|YP_006862539.1|	-	0.003	17.4	0.2	0.012	15.4	0.0	2.1	2	0	0	2	2	2	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
Ribosomal_L27_C	PF18471.1	gi|408404557|ref|YP_006862540.1|	-	0.04	13.3	0.0	0.043	13.2	0.0	1.0	1	0	0	1	1	1	0	Ribosomal	L27	protein	C-terminal	domain
HEPN_SAV2148	PF18725.1	gi|408404559|ref|YP_006862542.1|	-	0.021	14.2	0.1	0.025	14.0	0.1	1.1	1	0	0	1	1	1	0	SAV2148-like	HEPN
S-methyl_trans	PF02574.16	gi|408404559|ref|YP_006862542.1|	-	0.052	13.4	0.1	0.12	12.1	0.1	1.3	1	1	0	1	1	1	0	Homocysteine	S-methyltransferase
TCL1_MTCP1	PF01840.17	gi|408404559|ref|YP_006862542.1|	-	0.12	12.0	0.3	2.7	7.7	0.1	2.1	1	1	0	2	2	2	0	TCL1/MTCP1	family
TcfC	PF16967.5	gi|408404560|ref|YP_006862543.1|	-	0.02	14.4	0.3	0.05	13.1	0.0	1.8	2	0	0	2	2	2	0	E-set	like	domain
Alph_Pro_TM	PF09608.10	gi|408404560|ref|YP_006862543.1|	-	0.024	14.4	0.4	0.031	14.1	0.4	1.2	1	0	0	1	1	1	0	Putative	transmembrane	protein	(Alph_Pro_TM)
SnoaL	PF07366.12	gi|408404560|ref|YP_006862543.1|	-	0.041	13.7	0.0	0.067	13.0	0.0	1.4	1	1	0	1	1	1	0	SnoaL-like	polyketide	cyclase
SnoaL_2	PF12680.7	gi|408404560|ref|YP_006862543.1|	-	0.12	13.1	0.0	0.29	11.8	0.0	1.7	2	0	0	2	2	2	0	SnoaL-like	domain
PRiA4_ORF3	PF07929.11	gi|408404562|ref|YP_006862545.1|	-	3.1e-06	27.0	0.0	4e-06	26.6	0.0	1.1	1	0	0	1	1	1	1	Plasmid	pRiA4b	ORF-3-like	protein
Cys_rich_CPCC	PF14206.6	gi|408404562|ref|YP_006862545.1|	-	0.58	10.0	6.1	0.2	11.5	2.2	2.1	2	0	0	2	2	2	0	Cysteine-rich	CPCC
zf_C2HC_14	PF18574.1	gi|408404562|ref|YP_006862545.1|	-	4.8	7.1	8.7	0.44	10.4	2.2	2.5	2	0	0	2	2	2	0	C2HC	Zing	finger	domain
ERCC3_RAD25_C	PF16203.5	gi|408404563|ref|YP_006862546.1|	-	2.6e-11	43.2	0.0	4e-11	42.6	0.0	1.2	1	0	0	1	1	1	1	ERCC3/RAD25/XPB	C-terminal	helicase
ResIII	PF04851.15	gi|408404563|ref|YP_006862546.1|	-	7.3e-10	39.1	0.0	1.3e-09	38.3	0.0	1.4	1	0	0	1	1	1	1	Type	III	restriction	enzyme,	res	subunit
Helicase_C	PF00271.31	gi|408404563|ref|YP_006862546.1|	-	2.7e-07	30.9	0.0	7.1e-07	29.6	0.0	1.7	1	0	0	1	1	1	1	Helicase	conserved	C-terminal	domain
DEAD	PF00270.29	gi|408404563|ref|YP_006862546.1|	-	0.0003	20.6	0.0	0.0007	19.4	0.0	1.6	1	1	0	1	1	1	1	DEAD/DEAH	box	helicase
Helicase_C	PF00271.31	gi|408404564|ref|YP_006862547.1|	-	2.2e-25	89.2	0.0	1.4e-24	86.5	0.1	2.4	2	0	0	2	2	2	1	Helicase	conserved	C-terminal	domain
DEAD	PF00270.29	gi|408404564|ref|YP_006862547.1|	-	8.2e-21	74.5	0.1	3.9e-20	72.3	0.0	2.0	2	0	0	2	2	2	1	DEAD/DEAH	box	helicase
ResIII	PF04851.15	gi|408404564|ref|YP_006862547.1|	-	3.9e-18	66.0	0.0	9e-18	64.9	0.0	1.6	1	0	0	1	1	1	1	Type	III	restriction	enzyme,	res	subunit
SWI2_SNF2	PF18766.1	gi|408404564|ref|YP_006862547.1|	-	0.0047	16.6	0.0	0.0093	15.6	0.0	1.4	1	0	0	1	1	1	1	SWI2/SNF2	ATPase
DUF4532	PF15046.6	gi|408404564|ref|YP_006862547.1|	-	0.059	12.5	0.0	0.096	11.8	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF4532)
PhoH	PF02562.16	gi|408404564|ref|YP_006862547.1|	-	0.064	12.7	0.0	1.7	8.0	0.0	2.4	2	0	0	2	2	2	0	PhoH-like	protein
CALM_bind	PF16025.5	gi|408404564|ref|YP_006862547.1|	-	0.094	13.2	0.1	0.3	11.6	0.1	1.9	1	0	0	1	1	1	0	Calcium-dependent	calmodulin	binding
CDC37_M	PF08565.11	gi|408404564|ref|YP_006862547.1|	-	0.13	12.2	0.1	1.2	9.1	0.0	2.3	2	0	0	2	2	2	0	Cdc37	Hsp90	binding	domain
Nbl1_Borealin_N	PF10444.9	gi|408404564|ref|YP_006862547.1|	-	7.9	6.2	6.2	4.6	7.0	0.2	3.1	2	1	1	3	3	3	0	Nbl1	/	Borealin	N	terminal
Init_tRNA_PT	PF04179.12	gi|408404565|ref|YP_006862548.1|	-	0.033	14.5	0.0	0.035	14.4	0.0	1.2	1	0	0	1	1	1	0	Rit1	DUSP-like	domain
HEAT_2	PF13646.6	gi|408404566|ref|YP_006862549.1|	-	5.1e-06	26.8	0.1	7.6e-05	23.0	0.1	2.4	2	1	0	2	2	2	1	HEAT	repeats
DUF1186	PF06685.11	gi|408404566|ref|YP_006862549.1|	-	0.00012	21.6	0.0	0.00013	21.5	0.0	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1186)
HEAT_PBS	PF03130.16	gi|408404566|ref|YP_006862549.1|	-	0.03	15.0	0.0	3.8	8.5	0.0	3.1	3	0	0	3	3	3	0	PBS	lyase	HEAT-like	repeat
AAA_22	PF13401.6	gi|408404568|ref|YP_006862551.1|	-	2e-05	24.9	0.1	0.00076	19.8	0.0	3.0	4	0	0	4	4	4	1	AAA	domain
TrwB_AAD_bind	PF10412.9	gi|408404568|ref|YP_006862551.1|	-	4.4e-05	22.6	0.0	0.00014	20.9	0.0	1.8	1	1	0	1	1	1	1	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
FtsK_SpoIIIE	PF01580.18	gi|408404568|ref|YP_006862551.1|	-	0.00068	19.1	0.0	0.0018	17.7	0.0	1.7	1	0	0	1	1	1	1	FtsK/SpoIIIE	family
HTH_45	PF14947.6	gi|408404568|ref|YP_006862551.1|	-	0.0013	18.7	0.0	0.071	13.1	0.0	2.6	2	0	0	2	2	2	1	Winged	helix-turn-helix
AAA_14	PF13173.6	gi|408404568|ref|YP_006862551.1|	-	0.0025	17.8	0.1	0.061	13.4	0.0	2.6	2	0	0	2	2	2	1	AAA	domain
AAA_10	PF12846.7	gi|408404568|ref|YP_006862551.1|	-	0.028	13.4	0.0	0.054	12.4	0.0	1.4	1	0	0	1	1	1	0	AAA-like	domain
ATPase_2	PF01637.18	gi|408404568|ref|YP_006862551.1|	-	0.051	13.5	0.5	0.52	10.2	0.0	2.6	2	0	0	2	2	2	0	ATPase	domain	predominantly	from	Archaea
TraG-D_C	PF12696.7	gi|408404568|ref|YP_006862551.1|	-	0.074	13.0	0.0	0.16	12.0	0.0	1.5	1	0	0	1	1	1	0	TraM	recognition	site	of	TraD	and	TraG
AAA_23	PF13476.6	gi|408404568|ref|YP_006862551.1|	-	0.081	13.4	0.0	0.25	11.8	0.0	1.8	1	0	0	1	1	1	0	AAA	domain
HTH_24	PF13412.6	gi|408404568|ref|YP_006862551.1|	-	0.088	12.4	0.7	0.3	10.7	0.1	2.3	2	0	0	2	2	2	0	Winged	helix-turn-helix	DNA-binding
MMR_HSR1	PF01926.23	gi|408404568|ref|YP_006862551.1|	-	0.088	12.9	0.1	0.29	11.2	0.0	2.0	2	0	0	2	2	2	0	50S	ribosome-binding	GTPase
Suppressor_P21	PF11479.8	gi|408404568|ref|YP_006862551.1|	-	0.094	12.9	0.0	0.31	11.3	0.0	1.8	1	0	0	1	1	1	0	RNA	silencing	suppressor	P21	C-terminal	domain
DUF4777	PF16007.5	gi|408404568|ref|YP_006862551.1|	-	0.18	12.1	0.5	13	6.2	0.1	2.7	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4777)
CBS	PF00571.28	gi|408404570|ref|YP_006862553.1|	-	0.00024	21.5	0.0	0.23	12.0	0.0	2.5	2	1	0	2	2	2	2	CBS	domain
LuxQ-periplasm	PF09308.10	gi|408404570|ref|YP_006862553.1|	-	0.11	11.9	0.3	0.15	11.5	0.3	1.2	1	0	0	1	1	1	0	LuxQ,	periplasmic
CBS	PF00571.28	gi|408404571|ref|YP_006862554.1|	-	0.0023	18.3	0.3	1.4	9.4	0.0	2.2	2	0	0	2	2	2	2	CBS	domain
DUF418	PF04235.12	gi|408404573|ref|YP_006862556.1|	-	0.041	13.8	2.6	0.051	13.5	0.1	1.9	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF418)
L6_membrane	PF05805.12	gi|408404573|ref|YP_006862556.1|	-	0.053	13.1	0.9	0.066	12.8	0.9	1.2	1	0	0	1	1	1	0	L6	membrane	protein
Yip1	PF04893.17	gi|408404573|ref|YP_006862556.1|	-	0.62	9.8	9.9	5.5	6.7	9.9	1.9	1	1	0	1	1	1	0	Yip1	domain
Pyr_redox_2	PF07992.14	gi|408404574|ref|YP_006862557.1|	-	8.5e-63	212.3	0.6	1.1e-62	211.9	0.6	1.1	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_dim	PF02852.22	gi|408404574|ref|YP_006862557.1|	-	1.2e-30	106.0	0.4	2.4e-30	105.0	0.4	1.6	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase,	dimerisation	domain
Pyr_redox	PF00070.27	gi|408404574|ref|YP_006862557.1|	-	1.2e-16	61.0	1.3	1.3e-12	48.1	0.0	2.7	2	0	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_3	PF13738.6	gi|408404574|ref|YP_006862557.1|	-	1.3e-14	54.2	2.5	1e-13	51.3	2.5	2.0	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
GIDA	PF01134.22	gi|408404574|ref|YP_006862557.1|	-	2.2e-12	46.8	0.7	8.3e-11	41.6	0.1	2.7	3	0	0	3	3	3	1	Glucose	inhibited	division	protein	A
HI0933_like	PF03486.14	gi|408404574|ref|YP_006862557.1|	-	2.4e-06	26.5	5.1	0.0039	15.9	1.1	3.6	3	1	1	4	4	4	2	HI0933-like	protein
FAD_oxidored	PF12831.7	gi|408404574|ref|YP_006862557.1|	-	1.7e-05	24.4	4.6	4.8e-05	22.9	1.7	2.6	2	1	1	3	3	3	1	FAD	dependent	oxidoreductase
FAD_binding_2	PF00890.24	gi|408404574|ref|YP_006862557.1|	-	9e-05	21.7	3.9	0.0015	17.7	3.0	2.5	2	1	1	3	3	3	1	FAD	binding	domain
NAD_binding_8	PF13450.6	gi|408404574|ref|YP_006862557.1|	-	0.00044	20.4	4.6	0.16	12.2	2.5	2.6	2	0	0	2	2	2	2	NAD(P)-binding	Rossmann-like	domain
K_oxygenase	PF13434.6	gi|408404574|ref|YP_006862557.1|	-	0.00045	19.5	0.1	0.25	10.4	0.0	2.9	2	1	2	4	4	4	1	L-lysine	6-monooxygenase	(NADPH-requiring)
Thi4	PF01946.17	gi|408404574|ref|YP_006862557.1|	-	0.022	14.0	0.1	0.32	10.2	0.1	2.6	3	0	0	3	3	3	0	Thi4	family
FAD_binding_3	PF01494.19	gi|408404574|ref|YP_006862557.1|	-	0.023	14.0	0.2	0.59	9.3	0.1	2.2	2	0	0	2	2	2	0	FAD	binding	domain
AlaDh_PNT_C	PF01262.21	gi|408404574|ref|YP_006862557.1|	-	0.039	13.2	0.3	6.4	6.0	0.2	2.3	2	0	0	2	2	2	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
Lycopene_cycl	PF05834.12	gi|408404574|ref|YP_006862557.1|	-	0.048	12.7	0.7	1.3	8.0	0.6	2.2	2	0	0	2	2	2	0	Lycopene	cyclase	protein
DAO	PF01266.24	gi|408404574|ref|YP_006862557.1|	-	0.062	12.9	0.6	0.58	9.7	0.2	2.1	2	0	0	2	2	2	0	FAD	dependent	oxidoreductase
Bacteriocin_IIc	PF10439.9	gi|408404575|ref|YP_006862558.1|	-	0.38	10.9	12.5	0.53	10.4	12.5	1.2	1	0	0	1	1	1	0	Bacteriocin	class	II	with	double-glycine	leader	peptide
HxlR	PF01638.17	gi|408404576|ref|YP_006862559.1|	-	2.3e-21	75.4	0.1	3.5e-21	74.8	0.1	1.3	1	1	0	1	1	1	1	HxlR-like	helix-turn-helix
PadR	PF03551.14	gi|408404576|ref|YP_006862559.1|	-	0.0021	18.0	0.1	0.0038	17.1	0.1	1.5	1	0	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
B-block_TFIIIC	PF04182.12	gi|408404576|ref|YP_006862559.1|	-	0.011	15.8	0.0	0.023	14.9	0.0	1.4	1	1	0	1	1	1	0	B-block	binding	subunit	of	TFIIIC
RepL	PF05732.11	gi|408404576|ref|YP_006862559.1|	-	0.015	14.7	0.0	0.019	14.4	0.0	1.2	1	0	0	1	1	1	0	Firmicute	plasmid	replication	protein	(RepL)
HTH_24	PF13412.6	gi|408404576|ref|YP_006862559.1|	-	0.034	13.7	0.2	0.078	12.5	0.2	1.7	1	1	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
MarR	PF01047.22	gi|408404576|ref|YP_006862559.1|	-	0.092	12.7	0.0	0.16	11.9	0.0	1.4	1	0	0	1	1	1	0	MarR	family
FUR	PF01475.19	gi|408404576|ref|YP_006862559.1|	-	0.094	12.9	0.0	0.12	12.6	0.0	1.2	1	0	0	1	1	1	0	Ferric	uptake	regulator	family
DUF478	PF04334.12	gi|408404577|ref|YP_006862560.1|	-	0.068	13.2	2.5	0.12	12.4	0.5	2.3	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF478)
Prominin	PF05478.11	gi|408404577|ref|YP_006862560.1|	-	0.76	7.7	4.5	0.96	7.3	4.5	1.0	1	0	0	1	1	1	0	Prominin
AhpC-TSA	PF00578.21	gi|408404578|ref|YP_006862561.1|	-	4.1e-09	36.4	0.1	7.6e-09	35.5	0.1	1.4	1	1	0	1	1	1	1	AhpC/TSA	family
Redoxin	PF08534.10	gi|408404578|ref|YP_006862561.1|	-	1.3e-08	34.7	0.1	2.3e-08	33.8	0.1	1.3	1	1	0	1	1	1	1	Redoxin
Thioredoxin_8	PF13905.6	gi|408404578|ref|YP_006862561.1|	-	9.9e-05	22.6	0.0	0.00017	21.9	0.0	1.4	1	1	0	1	1	1	1	Thioredoxin-like
Thioredoxin_7	PF13899.6	gi|408404578|ref|YP_006862561.1|	-	0.0002	21.5	0.0	0.00032	20.8	0.0	1.4	1	0	0	1	1	1	1	Thioredoxin-like
SCO1-SenC	PF02630.14	gi|408404578|ref|YP_006862561.1|	-	0.0018	18.2	0.0	0.0029	17.5	0.0	1.3	1	0	0	1	1	1	1	SCO1/SenC
Thioredoxin	PF00085.20	gi|408404578|ref|YP_006862561.1|	-	0.0041	17.1	0.0	0.0069	16.4	0.0	1.3	1	0	0	1	1	1	1	Thioredoxin
Thioredoxin_2	PF13098.6	gi|408404578|ref|YP_006862561.1|	-	0.0066	16.9	0.1	0.0096	16.4	0.1	1.4	1	1	0	1	1	1	1	Thioredoxin-like	domain
YtfJ_HI0045	PF09695.10	gi|408404578|ref|YP_006862561.1|	-	0.13	11.9	0.0	0.17	11.5	0.0	1.2	1	0	0	1	1	1	0	Bacterial	protein	of	unknown	function	(YtfJ_HI0045)
DUF3179	PF11376.8	gi|408404580|ref|YP_006862563.1|	-	6.1e-110	367.1	0.0	7.3e-110	366.8	0.0	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3179)
Vut_1	PF02592.15	gi|408404581|ref|YP_006862564.1|	-	0.0077	16.6	3.5	0.01	16.2	3.5	1.2	1	0	0	1	1	1	1	Putative	vitamin	uptake	transporter
DUF1887	PF09002.11	gi|408404582|ref|YP_006862565.1|	-	0.0097	14.6	0.0	0.016	13.9	0.0	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1887)
Copper-bind	PF00127.20	gi|408404583|ref|YP_006862566.1|	-	6e-11	42.7	0.1	1.7e-10	41.3	0.1	1.8	1	0	0	1	1	1	1	Copper	binding	proteins,	plastocyanin/azurin	family
Cupredoxin_1	PF13473.6	gi|408404583|ref|YP_006862566.1|	-	2.1e-09	37.4	0.4	7.6e-08	32.4	0.1	3.1	2	1	0	2	2	2	1	Cupredoxin-like	domain
Thioredoxin_4	PF13462.6	gi|408404584|ref|YP_006862567.1|	-	4.7e-37	127.7	0.0	6.4e-37	127.3	0.0	1.2	1	0	0	1	1	1	1	Thioredoxin
DSBA	PF01323.20	gi|408404584|ref|YP_006862567.1|	-	6.7e-16	58.6	0.0	2.5e-14	53.5	0.0	2.1	1	1	0	1	1	1	1	DSBA-like	thioredoxin	domain
Thioredoxin_2	PF13098.6	gi|408404584|ref|YP_006862567.1|	-	1.9e-11	44.4	0.0	3.6e-11	43.5	0.0	1.5	1	0	0	1	1	1	1	Thioredoxin-like	domain
Thioredoxin_5	PF13743.6	gi|408404584|ref|YP_006862567.1|	-	8.5e-05	22.3	0.0	0.00012	21.8	0.0	1.4	1	0	0	1	1	1	1	Thioredoxin
DUF1610	PF07754.11	gi|408404584|ref|YP_006862567.1|	-	0.12	12.4	0.4	0.25	11.3	0.4	1.6	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1610)
zf-C2H2_6	PF13912.6	gi|408404586|ref|YP_006862569.1|	-	2.4e-07	30.6	12.7	0.0011	18.9	0.8	2.2	2	0	0	2	2	2	2	C2H2-type	zinc	finger
zf-met	PF12874.7	gi|408404586|ref|YP_006862569.1|	-	4e-07	30.2	7.2	0.0063	16.9	0.4	2.3	2	0	0	2	2	2	2	Zinc-finger	of	C2H2	type
zf-C2H2_jaz	PF12171.8	gi|408404586|ref|YP_006862569.1|	-	5.3e-07	29.8	4.6	0.013	15.7	0.2	2.3	2	0	0	2	2	2	2	Zinc-finger	double-stranded	RNA-binding
zf-C2H2	PF00096.26	gi|408404586|ref|YP_006862569.1|	-	2e-06	27.9	4.0	0.013	15.9	0.1	2.3	2	0	0	2	2	2	2	Zinc	finger,	C2H2	type
zf-C2H2_4	PF13894.6	gi|408404586|ref|YP_006862569.1|	-	4.9e-06	26.9	5.4	0.039	14.8	1.9	2.4	2	0	0	2	2	2	2	C2H2-type	zinc	finger
GATA	PF00320.27	gi|408404586|ref|YP_006862569.1|	-	6.4e-05	22.5	0.1	0.032	13.8	0.1	2.3	2	0	0	2	2	2	2	GATA	zinc	finger
zf-C2H2_11	PF16622.5	gi|408404586|ref|YP_006862569.1|	-	0.00038	20.1	1.7	0.26	11.1	0.5	2.2	2	0	0	2	2	2	2	zinc-finger	C2H2-type
zf-C2H2_3rep	PF18868.1	gi|408404586|ref|YP_006862569.1|	-	0.00098	19.8	5.1	0.16	12.7	2.9	2.0	1	1	1	2	2	2	2	Zinc	finger	C2H2-type,	3	repeats
zf-C2H2_8	PF15909.5	gi|408404586|ref|YP_006862569.1|	-	0.001	19.3	2.8	0.0025	18.1	2.8	1.6	1	1	0	1	1	1	1	C2H2-type	zinc	ribbon
zinc_ribbon_5	PF13719.6	gi|408404586|ref|YP_006862569.1|	-	0.002	17.9	0.9	0.54	10.1	0.1	2.3	2	0	0	2	2	2	1	zinc-ribbon	domain
zinc_ribbon_4	PF13717.6	gi|408404586|ref|YP_006862569.1|	-	0.0028	17.5	2.5	0.084	12.8	0.1	2.2	2	0	0	2	2	2	1	zinc-ribbon	domain
zf-Mss51	PF13824.6	gi|408404586|ref|YP_006862569.1|	-	0.0034	17.5	10.3	0.097	12.8	5.3	2.1	1	1	1	2	2	2	2	Zinc-finger	of	mitochondrial	splicing	suppressor	51
DUF4187	PF13821.6	gi|408404586|ref|YP_006862569.1|	-	0.0039	16.9	0.5	2.5	8.0	0.1	2.2	1	1	1	2	2	2	2	Domain	of	unknown	function	(DUF4187)
RNA_POL_M_15KD	PF02150.16	gi|408404586|ref|YP_006862569.1|	-	0.015	15.2	0.6	2.8	7.9	0.2	2.2	2	0	0	2	2	2	0	RNA	polymerases	M/15	Kd	subunit
CpXC	PF14353.6	gi|408404586|ref|YP_006862569.1|	-	0.015	15.3	1.6	0.23	11.5	1.6	2.0	1	1	0	1	1	1	0	CpXC	protein
DUF678	PF05077.12	gi|408404586|ref|YP_006862569.1|	-	0.017	15.2	0.1	2.2	8.5	0.0	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF678)
ADD_ATRX	PF17981.1	gi|408404586|ref|YP_006862569.1|	-	0.023	14.6	1.0	3.4	7.6	0.0	2.2	2	0	0	2	2	2	0	Cysteine	Rich	ADD	domain
Zn-ribbon_8	PF09723.10	gi|408404586|ref|YP_006862569.1|	-	0.025	14.7	2.9	2.9	8.1	0.2	2.2	2	0	0	2	2	2	0	Zinc	ribbon	domain
DUF2318	PF10080.9	gi|408404586|ref|YP_006862569.1|	-	0.025	14.7	1.4	4.4	7.5	0.2	2.1	1	1	0	2	2	2	0	Predicted	membrane	protein	(DUF2318)
OrfB_Zn_ribbon	PF07282.11	gi|408404586|ref|YP_006862569.1|	-	0.041	13.8	4.0	2.4	8.1	4.0	2.1	1	1	1	2	2	2	0	Putative	transposase	DNA-binding	domain
Lar_restr_allev	PF14354.6	gi|408404586|ref|YP_006862569.1|	-	0.053	13.9	4.4	2.3	8.6	0.6	2.1	1	1	1	2	2	2	0	Restriction	alleviation	protein	Lar
ADK_lid	PF05191.14	gi|408404586|ref|YP_006862569.1|	-	0.057	13.4	0.4	2.1	8.4	0.1	2.2	2	0	0	2	2	2	0	Adenylate	kinase,	active	site	lid
Rubredoxin_2	PF18073.1	gi|408404586|ref|YP_006862569.1|	-	0.073	12.8	3.7	2.1	8.1	0.3	2.3	2	0	0	2	2	2	0	Rubredoxin	metal	binding	domain
zinc-ribbons_6	PF07191.12	gi|408404586|ref|YP_006862569.1|	-	0.094	12.7	3.3	1	9.4	3.5	2.0	1	1	1	2	2	2	0	zinc-ribbons
zf-C2H2_2	PF12756.7	gi|408404586|ref|YP_006862569.1|	-	0.16	12.3	13.0	1.2	9.5	4.4	2.1	1	1	1	2	2	2	0	C2H2	type	zinc-finger	(2	copies)
Elf1	PF05129.13	gi|408404586|ref|YP_006862569.1|	-	0.17	12.0	2.9	6.7	6.8	0.2	2.1	1	1	1	2	2	2	0	Transcription	elongation	factor	Elf1	like
zf-H2C2_2	PF13465.6	gi|408404586|ref|YP_006862569.1|	-	0.32	11.5	16.8	0.41	11.2	0.3	2.9	3	0	0	3	3	3	0	Zinc-finger	double	domain
Actin_micro	PF17003.5	gi|408404586|ref|YP_006862569.1|	-	0.41	9.8	13.1	2.2	7.4	2.9	2.0	1	1	1	2	2	2	0	Putative	actin-like	family
DUF983	PF06170.12	gi|408404586|ref|YP_006862569.1|	-	0.43	11.0	1.5	12	6.3	0.1	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF983)
zf_C2H2_ZHX	PF18387.1	gi|408404586|ref|YP_006862569.1|	-	0.99	9.1	13.7	2.1	8.0	1.5	2.1	2	0	0	2	2	2	0	Zinc-fingers	and	homeoboxes	C2H2	finger	domain
zf-C2H2_9	PF16293.5	gi|408404586|ref|YP_006862569.1|	-	1.8	8.4	6.3	4.3	7.3	2.7	2.2	1	1	1	2	2	2	0	C2H2	type	zinc-finger	(1	copy)
MctB	PF11382.8	gi|408404587|ref|YP_006862570.1|	-	0.00013	21.8	0.6	0.0002	21.2	0.6	1.3	1	0	0	1	1	1	1	Copper	transport	outer	membrane	protein,	MctB
LapA_dom	PF06305.11	gi|408404587|ref|YP_006862570.1|	-	0.0033	17.2	0.2	0.0068	16.2	0.2	1.5	1	0	0	1	1	1	1	Lipopolysaccharide	assembly	protein	A	domain
Med21	PF11221.8	gi|408404587|ref|YP_006862570.1|	-	0.02	15.1	0.2	0.037	14.3	0.2	1.4	1	0	0	1	1	1	0	Subunit	21	of	Mediator	complex
Herpes_UL6	PF01763.16	gi|408404587|ref|YP_006862570.1|	-	0.047	12.2	0.0	0.062	11.8	0.0	1.1	1	0	0	1	1	1	0	Herpesvirus	UL6	like
DUF4574	PF15141.6	gi|408404587|ref|YP_006862570.1|	-	0.2	11.6	1.0	0.67	9.9	0.1	2.1	2	0	0	2	2	2	0	Ubiquinol-cytochrome-c	reductase	complex	assembly	factor	3
HxlR	PF01638.17	gi|408404589|ref|YP_006862572.1|	-	2.5e-21	75.3	0.1	3.7e-21	74.8	0.1	1.2	1	0	0	1	1	1	1	HxlR-like	helix-turn-helix
MarR	PF01047.22	gi|408404589|ref|YP_006862572.1|	-	0.0041	17.0	0.1	0.0064	16.4	0.1	1.3	1	0	0	1	1	1	1	MarR	family
PadR	PF03551.14	gi|408404589|ref|YP_006862572.1|	-	0.041	13.8	0.0	0.068	13.1	0.0	1.4	1	0	0	1	1	1	0	Transcriptional	regulator	PadR-like	family
HTH_34	PF13601.6	gi|408404589|ref|YP_006862572.1|	-	0.06	13.5	0.0	0.09	13.0	0.0	1.2	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
MarR_2	PF12802.7	gi|408404589|ref|YP_006862572.1|	-	0.066	13.1	0.0	0.11	12.4	0.0	1.3	1	0	0	1	1	1	0	MarR	family
AAA_10	PF12846.7	gi|408404590|ref|YP_006862573.1|	-	3e-14	52.7	0.0	1.8e-07	30.4	0.0	2.2	2	0	0	2	2	2	2	AAA-like	domain
DUF87	PF01935.17	gi|408404590|ref|YP_006862573.1|	-	5.8e-09	36.4	0.0	1.2e-08	35.4	0.0	1.5	1	0	0	1	1	1	1	Helicase	HerA,	central	domain
TrwB_AAD_bind	PF10412.9	gi|408404590|ref|YP_006862573.1|	-	0.0084	15.1	0.0	2.6	6.9	0.0	2.3	2	0	0	2	2	2	2	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
AAA_22	PF13401.6	gi|408404590|ref|YP_006862573.1|	-	0.032	14.5	0.0	3.3	8.0	0.0	3.1	2	1	0	2	2	2	0	AAA	domain
Abp2	PF09441.10	gi|408404590|ref|YP_006862573.1|	-	0.044	13.9	0.0	0.079	13.0	0.0	1.3	1	0	0	1	1	1	0	ARS	binding	protein	2
TraG-D_C	PF12696.7	gi|408404590|ref|YP_006862573.1|	-	0.049	13.6	0.0	0.13	12.2	0.0	1.7	1	0	0	1	1	1	0	TraM	recognition	site	of	TraD	and	TraG
PrgI	PF12666.7	gi|408404591|ref|YP_006862574.1|	-	0.015	16.0	1.0	0.027	15.2	1.0	1.4	1	0	0	1	1	1	0	PrgI	family	protein
DUF2635	PF10948.8	gi|408404591|ref|YP_006862574.1|	-	0.048	13.4	0.0	0.11	12.3	0.0	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2635)
DUF1533	PF07550.11	gi|408404591|ref|YP_006862574.1|	-	0.062	13.2	0.0	0.14	12.1	0.0	1.6	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1533)
DUF3955	PF13127.6	gi|408404591|ref|YP_006862574.1|	-	3.1	7.7	7.0	0.24	11.2	0.4	2.5	3	1	1	4	4	4	0	Protein	of	unknown	function	(DUF3955)
DUF123	PF01986.16	gi|408404592|ref|YP_006862575.1|	-	3.8e-29	101.0	0.0	4.9e-29	100.7	0.0	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	DUF123
GIY-YIG	PF01541.24	gi|408404592|ref|YP_006862575.1|	-	0.0089	16.3	0.0	0.013	15.7	0.0	1.5	1	0	0	1	1	1	1	GIY-YIG	catalytic	domain
Period_C	PF12114.8	gi|408404592|ref|YP_006862575.1|	-	0.024	14.2	0.1	0.031	13.9	0.1	1.1	1	0	0	1	1	1	0	Period	protein	2/3C-terminal	region
Ribosomal_L21e	PF01157.18	gi|408404593|ref|YP_006862576.1|	-	0.003	17.4	0.0	0.0034	17.2	0.0	1.1	1	0	0	1	1	1	1	Ribosomal	protein	L21e
MazE_antitoxin	PF04014.18	gi|408404593|ref|YP_006862576.1|	-	0.14	12.2	0.0	0.21	11.5	0.0	1.5	1	1	0	1	1	1	0	Antidote-toxin	recognition	MazE,	bacterial	antitoxin
Acetyltransf_7	PF13508.7	gi|408404594|ref|YP_006862577.1|	-	2.3e-06	27.9	0.3	4.3e-06	27.1	0.3	1.4	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_1	PF00583.25	gi|408404594|ref|YP_006862577.1|	-	2.8e-05	24.3	0.0	3.8e-05	23.9	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_10	PF13673.7	gi|408404594|ref|YP_006862577.1|	-	0.0037	17.2	0.0	0.0073	16.2	0.0	1.6	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_6	PF13480.7	gi|408404594|ref|YP_006862577.1|	-	0.035	14.3	0.0	0.067	13.3	0.0	1.4	1	0	0	1	1	1	0	Acetyltransferase	(GNAT)	domain
Tudor_3	PF18115.1	gi|408404594|ref|YP_006862577.1|	-	0.051	13.4	0.1	1.3	9.0	0.0	2.4	2	0	0	2	2	2	0	DNA	repair	protein	Crb2	Tudor	domain
GRAM	PF02893.20	gi|408404596|ref|YP_006862579.1|	-	0.00077	19.3	0.0	0.0017	18.2	0.0	1.6	1	0	0	1	1	1	1	GRAM	domain
Vps36_ESCRT-II	PF11605.8	gi|408404596|ref|YP_006862579.1|	-	0.013	15.6	0.0	0.025	14.7	0.0	1.5	1	0	0	1	1	1	0	Vacuolar	protein	sorting	protein	36	Vps36
RED_C	PF07807.11	gi|408404596|ref|YP_006862579.1|	-	0.32	11.5	2.3	1.8	9.0	0.4	2.2	1	1	1	2	2	2	0	RED-like	protein	C-terminal	region
T2SSF	PF00482.23	gi|408404598|ref|YP_006862581.1|	-	1.8e-09	37.6	0.3	3.4e-07	30.2	0.0	4.0	4	0	0	4	4	4	2	Type	II	secretion	system	(T2SS),	protein	F
DUF2647	PF10839.8	gi|408404598|ref|YP_006862581.1|	-	0.045	13.8	0.0	0.15	12.2	0.0	1.9	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2647)
T2SSE	PF00437.20	gi|408404599|ref|YP_006862582.1|	-	1.9e-40	138.7	0.0	2.9e-40	138.1	0.0	1.1	1	0	0	1	1	1	1	Type	II/IV	secretion	system	protein
ABC_tran	PF00005.27	gi|408404599|ref|YP_006862582.1|	-	0.00069	20.1	0.0	0.0041	17.6	0.0	2.2	2	0	0	2	2	2	1	ABC	transporter
FtsK_SpoIIIE	PF01580.18	gi|408404599|ref|YP_006862582.1|	-	0.0023	17.3	0.2	0.032	13.6	0.1	2.5	2	0	0	2	2	2	1	FtsK/SpoIIIE	family
AAA_29	PF13555.6	gi|408404599|ref|YP_006862582.1|	-	0.0025	17.5	0.7	0.006	16.3	0.2	1.8	2	0	0	2	2	2	1	P-loop	containing	region	of	AAA	domain
AAA_18	PF13238.6	gi|408404599|ref|YP_006862582.1|	-	0.003	18.1	1.0	0.016	15.7	0.3	2.4	2	1	0	2	2	2	1	AAA	domain
AAA_28	PF13521.6	gi|408404599|ref|YP_006862582.1|	-	0.025	14.8	0.6	0.08	13.2	0.0	2.2	2	1	0	2	2	2	0	AAA	domain
SRP54	PF00448.22	gi|408404599|ref|YP_006862582.1|	-	0.025	14.2	0.5	0.06	13.0	0.2	1.7	2	0	0	2	2	2	0	SRP54-type	protein,	GTPase	domain
TrwB_AAD_bind	PF10412.9	gi|408404599|ref|YP_006862582.1|	-	0.034	13.1	0.1	0.057	12.3	0.1	1.2	1	0	0	1	1	1	0	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
AAA_16	PF13191.6	gi|408404599|ref|YP_006862582.1|	-	0.049	14.0	0.0	0.15	12.4	0.0	1.9	2	0	0	2	2	1	0	AAA	ATPase	domain
AAA_22	PF13401.6	gi|408404599|ref|YP_006862582.1|	-	0.063	13.6	0.0	0.17	12.2	0.0	1.7	1	0	0	1	1	1	0	AAA	domain
AAA_7	PF12775.7	gi|408404599|ref|YP_006862582.1|	-	0.086	12.3	0.1	0.19	11.2	0.1	1.5	1	0	0	1	1	1	0	P-loop	containing	dynein	motor	region
AAA_30	PF13604.6	gi|408404599|ref|YP_006862582.1|	-	0.11	12.2	0.1	0.38	10.4	0.0	1.9	2	0	0	2	2	2	0	AAA	domain
cobW	PF02492.19	gi|408404599|ref|YP_006862582.1|	-	0.14	11.7	0.1	0.3	10.6	0.1	1.5	1	0	0	1	1	1	0	CobW/HypB/UreG,	nucleotide-binding	domain
AAA_23	PF13476.6	gi|408404599|ref|YP_006862582.1|	-	0.18	12.3	0.3	0.43	11.0	0.3	1.5	1	0	0	1	1	1	0	AAA	domain
DDE_Tnp_1	PF01609.21	gi|408404600|ref|YP_006862583.1|	-	0.0002	21.1	0.0	0.00041	20.0	0.0	1.6	1	1	0	1	1	1	1	Transposase	DDE	domain
DUF1815	PF08844.10	gi|408404600|ref|YP_006862583.1|	-	0.17	11.9	0.2	0.87	9.6	0.1	2.0	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF1815)
I-set	PF07679.16	gi|408404601|ref|YP_006862584.1|	-	2.8e-05	24.1	3.2	4.3	7.5	0.0	7.7	9	0	0	9	9	9	1	Immunoglobulin	I-set	domain
Y_Y_Y	PF07495.13	gi|408404601|ref|YP_006862584.1|	-	0.00037	20.4	0.8	0.69	9.9	0.0	5.8	6	0	0	6	6	6	1	Y_Y_Y	domain
fn3_6	PF17766.1	gi|408404601|ref|YP_006862584.1|	-	0.0037	17.4	30.8	3.9	7.7	0.0	11.0	10	2	2	12	12	12	1	Fibronectin	type-III	domain
Big_1	PF02369.16	gi|408404601|ref|YP_006862584.1|	-	0.0043	17.0	5.4	0.0043	17.0	5.4	10.8	9	3	2	11	11	10	2	Bacterial	Ig-like	domain	(group	1)
DUF499	PF04465.12	gi|408404601|ref|YP_006862584.1|	-	0.0054	14.6	0.0	1	7.0	0.0	3.1	3	1	1	4	4	4	2	Protein	of	unknown	function	(DUF499)
MG2	PF01835.19	gi|408404601|ref|YP_006862584.1|	-	0.014	15.8	17.8	16	6.1	0.1	8.8	7	1	3	10	10	10	0	MG2	domain
NPCBM_assoc	PF10633.9	gi|408404601|ref|YP_006862584.1|	-	0.018	15.3	36.6	0.82	10.0	0.1	10.2	8	0	0	8	8	8	0	NPCBM-associated,	NEW3	domain	of	alpha-galactosidase
DUF1966	PF09260.11	gi|408404601|ref|YP_006862584.1|	-	0.031	14.6	0.4	0.031	14.6	0.4	5.4	6	0	0	6	6	5	0	Domain	of	unknown	function	(DUF1966)
DUF4625	PF15418.6	gi|408404601|ref|YP_006862584.1|	-	0.045	14.0	0.0	67	3.7	0.0	5.2	5	0	0	5	5	5	0	Domain	of	unknown	function	(DUF4625)
FixG_C	PF11614.8	gi|408404601|ref|YP_006862584.1|	-	0.12	12.6	13.4	23	5.2	0.1	7.3	6	2	0	7	7	7	0	IG-like	fold	at	C-terminal	of	FixG,	putative	oxidoreductase
Cadherin	PF00028.17	gi|408404601|ref|YP_006862584.1|	-	0.57	10.7	12.2	12	6.5	0.3	6.4	6	0	0	6	6	6	0	Cadherin	domain
MG4	PF17789.1	gi|408404601|ref|YP_006862584.1|	-	1.1	9.5	10.7	1.1	9.5	0.4	5.2	4	0	0	4	4	4	0	Macroglobulin	domain	MG4
Peptidase_M1_N	PF17900.1	gi|408404601|ref|YP_006862584.1|	-	4.9	7.3	7.5	23	5.1	0.1	4.5	5	0	0	5	5	5	0	Peptidase	M1	N-terminal	domain
Pilin_N	PF07790.11	gi|408404602|ref|YP_006862585.1|	-	0.0065	17.4	1.2	0.017	16.1	1.2	1.8	1	1	0	1	1	1	1	Archaeal	Type	IV	pilin,	N-terminal
CBM_4_9	PF02018.17	gi|408404603|ref|YP_006862586.1|	-	0.013	15.8	1.3	0.87	9.9	0.1	2.1	1	1	0	2	2	2	0	Carbohydrate	binding	domain
DUF3426	PF11906.8	gi|408404603|ref|YP_006862586.1|	-	0.025	14.8	0.1	0.038	14.2	0.0	1.3	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF3426)
VirB8	PF04335.13	gi|408404603|ref|YP_006862586.1|	-	0.027	14.3	0.9	0.027	14.3	0.9	1.6	1	1	1	2	2	2	0	VirB8	protein
ParBc	PF02195.18	gi|408404604|ref|YP_006862587.1|	-	9.1e-12	45.1	0.0	1.7e-11	44.3	0.0	1.4	1	0	0	1	1	1	1	ParB-like	nuclease	domain
zinc_ribbon_4	PF13717.6	gi|408404604|ref|YP_006862587.1|	-	0.091	12.7	0.8	82	3.2	0.0	3.4	3	0	0	3	3	3	0	zinc-ribbon	domain
zinc_ribbon_5	PF13719.6	gi|408404604|ref|YP_006862587.1|	-	0.59	9.9	2.0	13	5.7	0.0	3.3	3	0	0	3	3	3	0	zinc-ribbon	domain
PBP1_TM	PF14812.6	gi|408404604|ref|YP_006862587.1|	-	0.78	10.1	6.6	0.29	11.5	3.2	1.9	2	0	0	2	2	2	0	Transmembrane	domain	of	transglycosylase	PBP1	at	N-terminal
TF_Zn_Ribbon	PF08271.12	gi|408404605|ref|YP_006862588.1|	-	0.017	14.6	0.5	0.039	13.5	0.5	1.6	1	0	0	1	1	1	0	TFIIB	zinc-binding
TFIIB	PF00382.19	gi|408404605|ref|YP_006862588.1|	-	0.075	13.1	0.3	11	6.1	0.1	2.5	2	0	0	2	2	2	0	Transcription	factor	TFIIB	repeat
HTH_IclR	PF09339.10	gi|408404607|ref|YP_006862590.1|	-	6.2e-06	25.9	0.0	1.2e-05	25.0	0.0	1.5	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
TrmB	PF01978.19	gi|408404607|ref|YP_006862590.1|	-	4.1e-05	23.4	0.0	6.6e-05	22.7	0.0	1.4	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_5	PF01022.20	gi|408404607|ref|YP_006862590.1|	-	7e-05	22.6	0.0	0.0002	21.2	0.0	1.7	2	0	0	2	2	2	1	Bacterial	regulatory	protein,	arsR	family
MarR_2	PF12802.7	gi|408404607|ref|YP_006862590.1|	-	0.00029	20.7	0.0	0.00053	19.8	0.0	1.5	1	1	0	1	1	1	1	MarR	family
HTH_24	PF13412.6	gi|408404607|ref|YP_006862590.1|	-	0.00045	19.7	0.0	0.00081	18.9	0.0	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
FaeA	PF04703.12	gi|408404607|ref|YP_006862590.1|	-	0.00065	20.0	0.0	0.0011	19.3	0.0	1.4	1	0	0	1	1	1	1	FaeA-like	protein
MarR	PF01047.22	gi|408404607|ref|YP_006862590.1|	-	0.001	19.0	0.2	0.0029	17.5	0.0	1.8	2	1	0	2	2	2	1	MarR	family
HTH_23	PF13384.6	gi|408404607|ref|YP_006862590.1|	-	0.0011	18.7	0.0	0.0019	17.9	0.0	1.4	1	0	0	1	1	1	1	Homeodomain-like	domain
SpoIIID	PF12116.8	gi|408404607|ref|YP_006862590.1|	-	0.002	18.2	0.0	0.0038	17.3	0.0	1.5	1	0	0	1	1	1	1	Stage	III	sporulation	protein	D
Fe_dep_repress	PF01325.19	gi|408404607|ref|YP_006862590.1|	-	0.0028	17.8	0.0	0.0056	16.9	0.0	1.5	1	0	0	1	1	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_10	PF04967.12	gi|408404607|ref|YP_006862590.1|	-	0.003	17.3	0.1	0.0051	16.6	0.1	1.3	1	0	0	1	1	1	1	HTH	DNA	binding	domain
HTH_Crp_2	PF13545.6	gi|408404607|ref|YP_006862590.1|	-	0.0038	17.2	0.0	0.0061	16.5	0.0	1.4	1	0	0	1	1	1	1	Crp-like	helix-turn-helix	domain
DUF4423	PF14394.6	gi|408404607|ref|YP_006862590.1|	-	0.0059	16.3	0.1	0.03	14.0	0.0	1.8	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF4423)
HTH_28	PF13518.6	gi|408404607|ref|YP_006862590.1|	-	0.0073	16.4	0.0	0.011	15.8	0.0	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_11	PF08279.12	gi|408404607|ref|YP_006862590.1|	-	0.0082	16.1	0.1	0.021	14.8	0.1	1.7	2	0	0	2	2	1	1	HTH	domain
HTH_20	PF12840.7	gi|408404607|ref|YP_006862590.1|	-	0.012	15.7	0.0	0.021	14.8	0.0	1.5	1	0	0	1	1	1	0	Helix-turn-helix	domain
GntR	PF00392.21	gi|408404607|ref|YP_006862590.1|	-	0.02	14.5	0.1	0.049	13.3	0.0	1.7	2	0	0	2	2	2	0	Bacterial	regulatory	proteins,	gntR	family
HTH_36	PF13730.6	gi|408404607|ref|YP_006862590.1|	-	0.042	13.8	0.0	0.41	10.6	0.0	2.2	2	0	0	2	2	2	0	Helix-turn-helix	domain
Phage_integrase	PF00589.22	gi|408404608|ref|YP_006862591.1|	-	7.4e-05	22.6	0.0	0.00071	19.4	0.0	2.1	1	1	0	1	1	1	1	Phage	integrase	family
PQQ	PF01011.21	gi|408404610|ref|YP_006862593.1|	-	0.033	14.1	0.1	21	5.2	0.0	3.2	3	0	0	3	3	3	0	PQQ	enzyme	repeat
PQQ_2	PF13360.6	gi|408404610|ref|YP_006862593.1|	-	0.16	11.5	0.0	1.2	8.7	0.0	2.3	2	1	0	2	2	2	0	PQQ-like	domain
DUF3185	PF11381.8	gi|408404611|ref|YP_006862594.1|	-	0.016	15.2	0.2	5.4	7.1	0.1	2.0	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3185)
CdAMP_rec	PF06153.11	gi|408404611|ref|YP_006862594.1|	-	0.12	12.6	0.1	0.21	11.8	0.0	1.4	1	1	0	1	1	1	0	Cyclic-di-AMP	receptor
DUF202	PF02656.15	gi|408404611|ref|YP_006862594.1|	-	0.14	12.6	0.5	1.5	9.3	0.1	2.0	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF202)
Phage_holin_3_6	PF07332.11	gi|408404611|ref|YP_006862594.1|	-	0.17	11.9	3.0	0.45	10.6	3.0	1.6	1	1	0	1	1	1	0	Putative	Actinobacterial	Holin-X,	holin	superfamily	III
PepSY	PF03413.19	gi|408404612|ref|YP_006862595.1|	-	0.0051	17.4	1.2	0.026	15.1	1.2	2.1	1	1	0	1	1	1	1	Peptidase	propeptide	and	YPEB	domain
DUF3748	PF12566.8	gi|408404612|ref|YP_006862595.1|	-	0.047	13.6	0.0	0.07	13.1	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3748)
HTH_20	PF12840.7	gi|408404615|ref|YP_006862598.1|	-	2.2e-07	30.9	0.0	3.1e-07	30.4	0.0	1.2	1	0	0	1	1	1	1	Helix-turn-helix	domain
Rrf2	PF02082.20	gi|408404615|ref|YP_006862598.1|	-	2.2e-06	27.9	0.3	2.9e-06	27.5	0.3	1.2	1	0	0	1	1	1	1	Transcriptional	regulator
HTH_5	PF01022.20	gi|408404615|ref|YP_006862598.1|	-	0.00019	21.2	0.2	0.00039	20.2	0.2	1.6	1	1	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
RepL	PF05732.11	gi|408404615|ref|YP_006862598.1|	-	0.00072	19.0	0.1	0.00081	18.9	0.1	1.1	1	0	0	1	1	1	1	Firmicute	plasmid	replication	protein	(RepL)
MarR_2	PF12802.7	gi|408404615|ref|YP_006862598.1|	-	0.0011	18.8	0.0	0.0018	18.1	0.0	1.2	1	0	0	1	1	1	1	MarR	family
HTH_34	PF13601.6	gi|408404615|ref|YP_006862598.1|	-	0.011	15.9	0.1	0.016	15.4	0.1	1.2	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
HTH_11	PF08279.12	gi|408404615|ref|YP_006862598.1|	-	0.013	15.5	0.0	0.018	15.0	0.0	1.2	1	0	0	1	1	1	0	HTH	domain
DUF1495	PF07381.11	gi|408404615|ref|YP_006862598.1|	-	0.013	15.3	0.3	0.026	14.3	0.1	1.5	1	1	1	2	2	2	0	Winged	helix	DNA-binding	domain	(DUF1495)
DUF4423	PF14394.6	gi|408404615|ref|YP_006862598.1|	-	0.024	14.4	0.0	0.027	14.2	0.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4423)
DUF2513	PF10711.9	gi|408404615|ref|YP_006862598.1|	-	0.033	14.5	0.0	0.042	14.2	0.0	1.3	1	0	0	1	1	1	0	Hypothetical	protein	(DUF2513)
TrmB	PF01978.19	gi|408404615|ref|YP_006862598.1|	-	0.045	13.6	0.0	0.06	13.2	0.0	1.2	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
AAA_22	PF13401.6	gi|408404616|ref|YP_006862599.1|	-	9.4e-09	35.7	0.1	2.9e-08	34.1	0.0	1.8	2	0	0	2	2	2	1	AAA	domain
Cdc6_C	PF09079.11	gi|408404616|ref|YP_006862599.1|	-	1.3e-07	31.5	0.1	3.1e-07	30.3	0.1	1.6	1	0	0	1	1	1	1	CDC6,	C	terminal	winged	helix	domain
AAA_16	PF13191.6	gi|408404616|ref|YP_006862599.1|	-	0.0002	21.8	0.2	0.016	15.6	0.2	2.4	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_24	PF13479.6	gi|408404616|ref|YP_006862599.1|	-	0.00021	21.1	0.0	0.00034	20.4	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
AAA	PF00004.29	gi|408404616|ref|YP_006862599.1|	-	0.003	18.0	0.1	0.0071	16.8	0.1	1.6	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
TniB	PF05621.11	gi|408404616|ref|YP_006862599.1|	-	0.005	16.3	0.0	0.008	15.6	0.0	1.3	1	0	0	1	1	1	1	Bacterial	TniB	protein
Phage_holin_3_6	PF07332.11	gi|408404618|ref|YP_006862601.1|	-	0.018	15.1	0.7	0.023	14.7	0.7	1.1	1	0	0	1	1	1	0	Putative	Actinobacterial	Holin-X,	holin	superfamily	III
DUF3185	PF11381.8	gi|408404618|ref|YP_006862601.1|	-	0.018	15.1	0.6	0.4	10.7	0.0	2.2	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3185)
Nitroreductase	PF00881.24	gi|408404619|ref|YP_006862602.1|	-	8.9e-31	107.2	0.0	1.9e-16	60.6	0.0	2.0	1	1	1	2	2	2	2	Nitroreductase	family
TM1586_NiRdase	PF14512.6	gi|408404619|ref|YP_006862602.1|	-	2e-07	30.8	0.0	0.0093	15.6	0.0	2.1	2	0	0	2	2	2	2	Putative	TM	nitroreductase
DUF5353	PF17304.2	gi|408404620|ref|YP_006862603.1|	-	1.7	8.5	11.2	0.17	11.6	2.4	2.4	1	1	1	2	2	2	0	Family	of	unknown	function	(DUF5353)
CBS	PF00571.28	gi|408404621|ref|YP_006862604.1|	-	4.2e-54	180.8	10.6	3.2e-14	53.1	0.2	4.1	4	0	0	4	4	4	4	CBS	domain
DUF2700	PF10912.8	gi|408404622|ref|YP_006862605.1|	-	0.026	14.5	1.1	0.026	14.5	1.1	2.7	2	1	1	3	3	3	0	Protein	of	unknown	function	(DUF2700)
DUF4282	PF14110.6	gi|408404622|ref|YP_006862605.1|	-	0.43	11.3	9.6	1.7	9.4	0.7	2.6	2	1	1	3	3	3	0	Domain	of	unknown	function	(DUF4282)
DUF11	PF01345.18	gi|408404624|ref|YP_006862607.1|	-	0.027	14.8	0.8	0.054	13.8	0.8	1.5	1	0	0	1	1	1	0	Domain	of	unknown	function	DUF11
RDD	PF06271.12	gi|408404625|ref|YP_006862608.1|	-	1.5e-15	57.7	6.5	3.8e-15	56.3	6.4	1.8	1	1	0	1	1	1	1	RDD	family
DUF2627	PF11118.8	gi|408404625|ref|YP_006862608.1|	-	2.7	8.6	5.7	20	5.9	0.0	3.4	3	1	0	3	3	3	0	Protein	of	unknown	function	(DUF2627)
RseC_MucC	PF04246.12	gi|408404626|ref|YP_006862609.1|	-	0.92	9.5	7.6	1.7	8.6	0.3	2.7	1	1	1	2	2	2	0	Positive	regulator	of	sigma(E),	RseC/MucC
LIM	PF00412.22	gi|408404628|ref|YP_006862611.1|	-	0.00011	22.4	1.0	0.00035	20.7	1.0	1.8	1	1	0	1	1	1	1	LIM	domain
DZR	PF12773.7	gi|408404628|ref|YP_006862611.1|	-	0.00053	20.0	3.6	0.0098	15.9	0.4	2.2	1	1	0	2	2	2	1	Double	zinc	ribbon
Zf_RING	PF16744.5	gi|408404628|ref|YP_006862611.1|	-	0.0026	17.8	1.7	0.0049	17.0	1.7	1.6	1	1	0	1	1	1	1	KIAA1045	RING	finger
Auto_anti-p27	PF06677.12	gi|408404628|ref|YP_006862611.1|	-	0.0027	17.8	5.4	1.2	9.4	1.7	2.7	2	1	0	2	2	2	2	Sjogren's	syndrome/scleroderma	autoantigen	1	(Autoantigen	p27)
zf-ribbon_3	PF13248.6	gi|408404628|ref|YP_006862611.1|	-	0.0035	16.7	4.0	1.2	8.7	0.0	3.1	3	0	0	3	3	3	2	zinc-ribbon	domain
GATA	PF00320.27	gi|408404628|ref|YP_006862611.1|	-	0.0049	16.4	0.9	2.4	7.8	0.0	2.7	2	1	0	2	2	2	1	GATA	zinc	finger
OrfB_Zn_ribbon	PF07282.11	gi|408404628|ref|YP_006862611.1|	-	0.0068	16.3	1.3	0.41	10.6	0.4	2.2	1	1	1	2	2	2	2	Putative	transposase	DNA-binding	domain
Zn-ribbon_8	PF09723.10	gi|408404628|ref|YP_006862611.1|	-	0.0088	16.1	2.1	1.8	8.7	0.6	2.6	2	1	0	2	2	2	1	Zinc	ribbon	domain
Nudix_N_2	PF14803.6	gi|408404628|ref|YP_006862611.1|	-	0.024	14.6	3.2	15	5.6	0.1	3.2	3	0	0	3	3	3	0	Nudix	N-terminal
zinc_ribbon_2	PF13240.6	gi|408404628|ref|YP_006862611.1|	-	0.028	14.1	4.0	4.2	7.2	0.1	3.2	3	0	0	3	3	3	0	zinc-ribbon	domain
zf-RRN7	PF11781.8	gi|408404628|ref|YP_006862611.1|	-	0.032	13.9	1.3	12	5.7	0.0	3.0	3	0	0	3	3	3	0	Zinc-finger	of	RNA-polymerase	I-specific	TFIIB,	Rrn7
NOB1_Zn_bind	PF08772.11	gi|408404628|ref|YP_006862611.1|	-	0.032	14.4	4.5	0.53	10.5	1.2	2.4	1	1	0	2	2	2	0	Nin	one	binding	(NOB1)	Zn-ribbon	like
DUF2256	PF10013.9	gi|408404628|ref|YP_006862611.1|	-	0.043	13.9	4.7	0.091	12.9	0.1	2.5	3	0	0	3	3	2	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2256)
Prim_Zn_Ribbon	PF08273.12	gi|408404628|ref|YP_006862611.1|	-	0.1	12.9	4.7	2	8.8	0.7	2.5	2	1	0	2	2	2	0	Zinc-binding	domain	of	primase-helicase
TF_Zn_Ribbon	PF08271.12	gi|408404628|ref|YP_006862611.1|	-	0.12	11.9	7.0	0.14	11.7	2.6	2.6	2	1	0	2	2	2	0	TFIIB	zinc-binding
zf-NADH-PPase	PF09297.11	gi|408404628|ref|YP_006862611.1|	-	0.15	11.7	5.0	9.7	6.0	0.3	3.1	3	0	0	3	3	3	0	NADH	pyrophosphatase	zinc	ribbon	domain
zinc-ribbon_6	PF10005.9	gi|408404628|ref|YP_006862611.1|	-	0.16	12.6	2.9	3.2	8.5	0.0	2.7	2	1	1	3	3	3	0	zinc-ribbon	domain
Endonuclease_7	PF02945.15	gi|408404628|ref|YP_006862611.1|	-	0.19	11.7	4.4	0.069	13.1	0.8	1.8	1	1	1	2	2	2	0	Recombination	endonuclease	VII
Lar_restr_allev	PF14354.6	gi|408404628|ref|YP_006862611.1|	-	0.33	11.4	4.1	0.81	10.1	4.1	1.8	1	1	0	1	1	1	0	Restriction	alleviation	protein	Lar
Yippee-Mis18	PF03226.14	gi|408404628|ref|YP_006862611.1|	-	0.37	11.0	3.4	1	9.6	2.6	1.9	1	1	0	1	1	1	0	Yippee	zinc-binding/DNA-binding	/Mis18,	centromere	assembly
HalOD2	PF18547.1	gi|408404628|ref|YP_006862611.1|	-	0.45	10.5	2.9	0.22	11.4	0.4	1.8	2	0	0	2	2	2	0	Halobacterial	output	domain	2
YhfH	PF14149.6	gi|408404628|ref|YP_006862611.1|	-	0.88	9.6	7.2	1.1	9.3	0.0	3.1	4	0	0	4	4	3	0	YhfH-like	protein
zf-C3H2C3	PF17122.5	gi|408404628|ref|YP_006862611.1|	-	1.1	9.3	6.6	15	5.8	0.4	3.1	2	1	1	3	3	3	0	Zinc-finger
C1_1	PF00130.22	gi|408404628|ref|YP_006862611.1|	-	1.3	9.0	6.8	19	5.3	2.6	2.7	1	1	0	2	2	2	0	Phorbol	esters/diacylglycerol	binding	domain	(C1	domain)
zf-C2H2_3	PF13878.6	gi|408404628|ref|YP_006862611.1|	-	1.5	8.7	5.8	1.3	8.9	0.1	3.0	3	1	0	3	3	3	0	zinc-finger	of	acetyl-transferase	ESCO
Prok-RING_1	PF14446.6	gi|408404628|ref|YP_006862611.1|	-	1.6	8.7	9.9	3.2	7.8	4.9	3.2	2	1	0	2	2	2	0	Prokaryotic	RING	finger	family	1
Usp	PF00582.26	gi|408404629|ref|YP_006862612.1|	-	7e-35	120.6	0.2	8.5e-35	120.3	0.2	1.1	1	0	0	1	1	1	1	Universal	stress	protein	family
SRP54	PF00448.22	gi|408404629|ref|YP_006862612.1|	-	0.033	13.8	0.0	0.072	12.7	0.0	1.5	2	0	0	2	2	2	0	SRP54-type	protein,	GTPase	domain
DUF2148	PF09918.9	gi|408404629|ref|YP_006862612.1|	-	0.04	14.0	0.3	0.04	14.0	0.3	1.6	2	0	0	2	2	2	0	Uncharacterized	protein	containing	a	ferredoxin	domain	(DUF2148)
DUF5416	PF17437.2	gi|408404629|ref|YP_006862612.1|	-	0.084	12.7	0.0	0.12	12.2	0.0	1.2	1	0	0	1	1	1	0	Family	of	unknown	function	(DUF5416)
CBS	PF00571.28	gi|408404630|ref|YP_006862613.1|	-	5e-41	138.9	3.4	4.1e-11	43.2	0.6	4.1	4	0	0	4	4	4	4	CBS	domain
CENP-W	PF15510.6	gi|408404630|ref|YP_006862613.1|	-	0.092	13.0	0.1	0.86	9.9	0.0	2.3	2	0	0	2	2	2	0	CENP-W	protein
CDC48_2	PF02933.17	gi|408404630|ref|YP_006862613.1|	-	0.19	11.5	1.0	2.2	8.1	0.0	2.9	3	1	0	3	3	3	0	Cell	division	protein	48	(CDC48),	domain	2
ADH_zinc_N	PF00107.26	gi|408404631|ref|YP_006862614.1|	-	1.3e-28	99.6	0.8	1.5e-28	99.3	0.1	1.5	2	0	0	2	2	2	1	Zinc-binding	dehydrogenase
ADH_N	PF08240.12	gi|408404631|ref|YP_006862614.1|	-	1.7e-26	92.2	0.0	3.1e-26	91.4	0.0	1.4	1	0	0	1	1	1	1	Alcohol	dehydrogenase	GroES-like	domain
ADH_zinc_N_2	PF13602.6	gi|408404631|ref|YP_006862614.1|	-	2.1e-14	54.7	0.1	4.4e-14	53.7	0.1	1.6	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
Glu_dehyd_C	PF16912.5	gi|408404631|ref|YP_006862614.1|	-	0.0016	18.0	0.4	0.0024	17.4	0.4	1.2	1	0	0	1	1	1	1	Glucose	dehydrogenase	C-terminus
Methyltransf_31	PF13847.6	gi|408404631|ref|YP_006862614.1|	-	0.034	13.9	0.3	0.4	10.4	0.0	2.1	2	0	0	2	2	2	0	Methyltransferase	domain
ApbA	PF02558.16	gi|408404631|ref|YP_006862614.1|	-	0.063	12.9	0.2	0.1	12.2	0.2	1.3	1	0	0	1	1	1	0	Ketopantoate	reductase	PanE/ApbA
CBS	PF00571.28	gi|408404632|ref|YP_006862615.1|	-	7.5e-15	55.1	3.4	3.2e-06	27.5	0.0	3.7	4	0	0	4	4	4	3	CBS	domain
HTH_23	PF13384.6	gi|408404633|ref|YP_006862616.1|	-	0.0015	18.3	0.0	0.0021	17.8	0.0	1.3	1	0	0	1	1	1	1	Homeodomain-like	domain
HTH_7	PF02796.15	gi|408404633|ref|YP_006862616.1|	-	0.0056	16.7	0.1	0.01	15.9	0.1	1.5	1	1	0	1	1	1	1	Helix-turn-helix	domain	of	resolvase
HTH_AraC	PF00165.23	gi|408404633|ref|YP_006862616.1|	-	0.0077	16.3	0.1	0.044	13.9	0.0	2.0	2	0	0	2	2	2	1	Bacterial	regulatory	helix-turn-helix	proteins,	AraC	family
HTH_24	PF13412.6	gi|408404633|ref|YP_006862616.1|	-	0.011	15.3	0.1	0.015	14.8	0.1	1.2	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
Sigma70_r4_2	PF08281.12	gi|408404633|ref|YP_006862616.1|	-	0.026	14.2	0.0	0.036	13.8	0.0	1.3	1	0	0	1	1	1	0	Sigma-70,	region	4
TnsD	PF15978.5	gi|408404633|ref|YP_006862616.1|	-	0.029	13.4	0.0	0.029	13.4	0.0	1.0	1	0	0	1	1	1	0	Tn7-like	transposition	protein	D
FeoC	PF09012.10	gi|408404633|ref|YP_006862616.1|	-	0.042	13.9	0.1	0.055	13.6	0.1	1.2	1	0	0	1	1	1	0	FeoC	like	transcriptional	regulator
HTH_38	PF13936.6	gi|408404633|ref|YP_006862616.1|	-	0.058	13.2	0.0	0.094	12.5	0.0	1.3	1	0	0	1	1	1	0	Helix-turn-helix	domain
RPA_C	PF08784.11	gi|408404633|ref|YP_006862616.1|	-	0.12	13.1	0.0	0.13	13.0	0.0	1.1	1	0	0	1	1	1	0	Replication	protein	A	C	terminal
HTH_3	PF01381.22	gi|408404633|ref|YP_006862616.1|	-	0.13	12.4	0.4	6.3	7.0	0.1	2.3	1	1	1	2	2	2	0	Helix-turn-helix
Abhydrolase_1	PF00561.20	gi|408404636|ref|YP_006862619.1|	-	1.8e-14	54.0	0.0	1.7e-10	41.0	0.0	2.4	2	1	0	2	2	2	2	alpha/beta	hydrolase	fold
Hydrolase_4	PF12146.8	gi|408404636|ref|YP_006862619.1|	-	7e-10	38.6	0.0	0.00049	19.4	0.0	2.2	2	0	0	2	2	2	2	Serine	aminopeptidase,	S33
DUF3141	PF11339.8	gi|408404636|ref|YP_006862619.1|	-	6.1e-08	31.6	0.0	1.4e-07	30.4	0.0	1.5	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF3141)
PhaC_N	PF07167.13	gi|408404636|ref|YP_006862619.1|	-	6.6e-07	29.1	0.0	1.3e-06	28.2	0.0	1.4	1	0	0	1	1	1	1	Poly-beta-hydroxybutyrate	polymerase	(PhaC)	N-terminus
DLH	PF01738.18	gi|408404636|ref|YP_006862619.1|	-	2.5e-06	27.2	0.0	0.00017	21.2	0.0	2.2	2	0	0	2	2	2	1	Dienelactone	hydrolase	family
Abhydrolase_6	PF12697.7	gi|408404636|ref|YP_006862619.1|	-	0.00019	22.1	0.0	0.00032	21.4	0.0	1.3	1	0	0	1	1	1	1	Alpha/beta	hydrolase	family
Abhydrolase_5	PF12695.7	gi|408404636|ref|YP_006862619.1|	-	0.00023	21.0	0.0	0.072	12.9	0.0	2.2	2	0	0	2	2	2	2	Alpha/beta	hydrolase	family
FSH1	PF03959.13	gi|408404636|ref|YP_006862619.1|	-	0.00057	19.6	0.0	0.004	16.8	0.0	2.0	2	0	0	2	2	2	1	Serine	hydrolase	(FSH1)
BAAT_C	PF08840.11	gi|408404636|ref|YP_006862619.1|	-	0.0061	16.5	0.0	0.069	13.1	0.0	2.1	1	1	0	1	1	1	1	BAAT	/	Acyl-CoA	thioester	hydrolase	C	terminal
CBS	PF00571.28	gi|408404637|ref|YP_006862620.1|	-	1e-21	77.1	1.7	9.5e-10	38.8	0.4	2.2	2	0	0	2	2	2	2	CBS	domain
EnY2	PF10163.9	gi|408404637|ref|YP_006862620.1|	-	0.035	14.5	0.1	0.13	12.7	0.0	1.9	2	0	0	2	2	2	0	Transcription	factor	e(y)2
Vmethyltransf	PF01660.17	gi|408404637|ref|YP_006862620.1|	-	0.16	10.8	0.0	0.26	10.1	0.0	1.3	1	0	0	1	1	1	0	Viral	methyltransferase
DUF2620	PF10941.8	gi|408404638|ref|YP_006862621.1|	-	0.12	12.5	0.0	0.19	11.9	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	DUF2620
DUF488	PF04343.13	gi|408404639|ref|YP_006862622.1|	-	1.7e-18	67.4	0.1	2e-18	67.2	0.1	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function,	DUF488
DUF4336	PF14234.6	gi|408404639|ref|YP_006862622.1|	-	0.00015	21.1	0.1	0.00017	20.9	0.1	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4336)
HEPN_AbiU2	PF18734.1	gi|408404639|ref|YP_006862622.1|	-	0.046	13.2	0.5	0.075	12.5	0.5	1.5	1	1	0	1	1	1	0	AbiU2
Hemerythrin	PF01814.23	gi|408404640|ref|YP_006862623.1|	-	3.3e-11	43.9	8.0	8.1e-11	42.7	8.2	1.5	1	1	0	1	1	1	1	Hemerythrin	HHE	cation	binding	domain
DUF1043	PF06295.12	gi|408404640|ref|YP_006862623.1|	-	0.033	14.2	1.6	0.033	14.2	1.6	2.1	1	1	2	3	3	3	0	Protein	of	unknown	function	(DUF1043)
Glyco_hydro_46	PF01374.18	gi|408404640|ref|YP_006862623.1|	-	0.06	13.0	0.1	0.075	12.6	0.1	1.2	1	0	0	1	1	1	0	Glycosyl	hydrolase	family	46
CDC37_N	PF03234.14	gi|408404640|ref|YP_006862623.1|	-	0.92	10.4	6.4	4.9	8.1	6.7	1.8	1	1	1	2	2	2	0	Cdc37	N	terminal	kinase	binding
Fer4	PF00037.27	gi|408404641|ref|YP_006862624.1|	-	2.2e-11	43.0	10.2	7.2e-06	25.6	0.8	2.3	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_7	PF12838.7	gi|408404641|ref|YP_006862624.1|	-	2.7e-10	40.7	2.2	3.2e-05	24.4	0.7	2.3	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_16	PF13484.6	gi|408404641|ref|YP_006862624.1|	-	1.5e-08	35.4	2.5	5.1e-05	24.1	0.6	2.5	2	0	0	2	2	2	2	4Fe-4S	double	cluster	binding	domain
Fer4_10	PF13237.6	gi|408404641|ref|YP_006862624.1|	-	1.8e-08	34.3	5.5	1.6e-06	28.1	6.6	2.4	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_21	PF14697.6	gi|408404641|ref|YP_006862624.1|	-	3.3e-08	33.5	1.2	0.00018	21.5	0.2	2.3	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_9	PF13187.6	gi|408404641|ref|YP_006862624.1|	-	6.8e-08	32.6	6.8	2.8e-07	30.6	7.0	1.8	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_6	PF12837.7	gi|408404641|ref|YP_006862624.1|	-	2.5e-07	30.5	10.8	0.00046	20.1	3.2	2.3	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_8	PF13183.6	gi|408404641|ref|YP_006862624.1|	-	4.9e-06	26.9	22.0	0.00018	21.9	7.2	2.2	1	1	2	3	3	3	3	4Fe-4S	dicluster	domain
Fer4_13	PF13370.6	gi|408404641|ref|YP_006862624.1|	-	2.4e-05	24.8	6.5	0.047	14.2	0.3	2.8	3	0	0	3	3	3	2	4Fe-4S	single	cluster	domain	of	Ferredoxin	I
Fer4_17	PF13534.6	gi|408404641|ref|YP_006862624.1|	-	5.8e-05	23.6	4.8	0.0006	20.3	5.7	2.0	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_2	PF12797.7	gi|408404641|ref|YP_006862624.1|	-	0.00012	22.0	9.8	0.014	15.4	3.3	2.4	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_22	PF17179.4	gi|408404641|ref|YP_006862624.1|	-	0.00032	21.5	1.4	0.75	10.7	0.0	2.2	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_4	PF12800.7	gi|408404641|ref|YP_006862624.1|	-	0.00034	20.9	7.3	0.027	15.0	2.0	2.3	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_18	PF13746.6	gi|408404641|ref|YP_006862624.1|	-	0.0011	19.1	8.4	0.003	17.7	6.2	2.2	1	1	1	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_15	PF13459.6	gi|408404641|ref|YP_006862624.1|	-	0.0048	17.6	8.1	0.032	15.0	0.1	2.8	2	1	0	2	2	2	1	4Fe-4S	single	cluster	domain
Fer4_3	PF12798.7	gi|408404641|ref|YP_006862624.1|	-	0.014	16.3	13.1	0.82	10.7	5.6	2.3	2	0	0	2	2	2	0	4Fe-4S	binding	domain
ETF_QO	PF05187.13	gi|408404641|ref|YP_006862624.1|	-	0.66	10.1	6.1	11	6.2	0.0	2.7	1	1	2	3	3	3	0	Electron	transfer	flavoprotein-ubiquinone	oxidoreductase,	4Fe-4S
Usp	PF00582.26	gi|408404642|ref|YP_006862625.1|	-	7.4e-31	107.5	0.1	2.3e-30	106.0	0.1	1.7	1	1	0	1	1	1	1	Universal	stress	protein	family
GARS_N	PF02844.15	gi|408404642|ref|YP_006862625.1|	-	0.084	13.7	0.0	0.16	12.7	0.0	1.5	1	0	0	1	1	1	0	Phosphoribosylglycinamide	synthetase,	N	domain
DXP_reductoisom	PF02670.16	gi|408404642|ref|YP_006862625.1|	-	0.086	13.6	0.0	0.12	13.1	0.0	1.3	1	0	0	1	1	1	0	1-deoxy-D-xylulose	5-phosphate	reductoisomerase
VIT1	PF01988.19	gi|408404644|ref|YP_006862627.1|	-	1.8e-61	207.8	1.4	2e-61	207.6	1.4	1.0	1	0	0	1	1	1	1	VIT	family
DUF123	PF01986.16	gi|408404644|ref|YP_006862627.1|	-	0.031	14.8	0.1	0.05	14.1	0.1	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	DUF123
GP3_package	PF16677.5	gi|408404644|ref|YP_006862627.1|	-	0.059	13.5	0.2	0.095	12.8	0.2	1.2	1	0	0	1	1	1	0	DNA-packaging	protein	gp3
SieB	PF14163.6	gi|408404644|ref|YP_006862627.1|	-	0.15	11.5	1.2	1.4	8.4	0.0	2.2	2	0	0	2	2	2	0	Super-infection	exclusion	protein	B
AA_permease_2	PF13520.6	gi|408404645|ref|YP_006862628.1|	-	1.7e-56	191.9	54.2	2e-56	191.6	54.2	1.0	1	0	0	1	1	1	1	Amino	acid	permease
AA_permease	PF00324.21	gi|408404645|ref|YP_006862628.1|	-	2.5e-32	112.1	51.5	3e-32	111.8	51.5	1.0	1	0	0	1	1	1	1	Amino	acid	permease
Spore_permease	PF03845.13	gi|408404645|ref|YP_006862628.1|	-	7.6e-07	28.3	26.9	7.4e-06	25.0	14.9	2.2	2	0	0	2	2	2	2	Spore	germination	protein
AA_permease_C	PF13906.6	gi|408404645|ref|YP_006862628.1|	-	0.99	9.5	0.0	0.99	9.5	0.0	6.6	8	1	0	8	8	8	0	C-terminus	of	AA_permease
2TM	PF13239.6	gi|408404645|ref|YP_006862628.1|	-	1.2	9.5	0.0	1.2	9.5	0.0	4.5	4	2	1	5	5	5	0	2TM	domain
CBS	PF00571.28	gi|408404646|ref|YP_006862629.1|	-	3.2e-17	62.7	0.6	4.2e-17	62.3	0.6	1.2	1	0	0	1	1	1	1	CBS	domain
PRC	PF05239.16	gi|408404646|ref|YP_006862629.1|	-	0.0047	17.0	0.2	0.19	11.8	0.1	2.2	1	1	1	2	2	2	2	PRC-barrel	domain
CBS	PF00571.28	gi|408404647|ref|YP_006862630.1|	-	1.4e-22	79.8	9.1	5e-13	49.3	0.9	2.9	3	0	0	3	3	3	2	CBS	domain
zf-C2H2_4	PF13894.6	gi|408404647|ref|YP_006862630.1|	-	0.00041	21.0	0.2	0.0009	19.9	0.2	1.6	1	0	0	1	1	1	1	C2H2-type	zinc	finger
zf-C2H2	PF00096.26	gi|408404647|ref|YP_006862630.1|	-	0.002	18.5	0.3	0.0039	17.6	0.3	1.4	1	0	0	1	1	1	1	Zinc	finger,	C2H2	type
zf-Di19	PF05605.12	gi|408404647|ref|YP_006862630.1|	-	0.0051	17.1	0.0	0.011	16.0	0.0	1.5	1	0	0	1	1	1	1	Drought	induced	19	protein	(Di19),	zinc-binding
zf-C2H2_9	PF16293.5	gi|408404647|ref|YP_006862630.1|	-	0.048	13.5	0.0	0.089	12.7	0.0	1.4	1	0	0	1	1	1	0	C2H2	type	zinc-finger	(1	copy)
zf-CHCC	PF10276.9	gi|408404647|ref|YP_006862630.1|	-	0.071	13.2	0.0	0.13	12.4	0.0	1.4	1	0	0	1	1	1	0	Zinc-finger	domain
Cys_rich_CPXG	PF14255.6	gi|408404647|ref|YP_006862630.1|	-	0.13	12.2	0.0	0.29	11.1	0.0	1.6	1	0	0	1	1	1	0	Cysteine-rich	CPXCG
zf-ribbon_3	PF13248.6	gi|408404647|ref|YP_006862630.1|	-	0.15	11.5	0.1	0.27	10.7	0.1	1.4	1	0	0	1	1	1	0	zinc-ribbon	domain
zf-C2H2_2	PF12756.7	gi|408404647|ref|YP_006862630.1|	-	0.18	12.1	0.0	0.41	11.0	0.0	1.5	1	0	0	1	1	1	0	C2H2	type	zinc-finger	(2	copies)
CopG_antitoxin	PF12441.8	gi|408404648|ref|YP_006862631.1|	-	0.00036	21.0	0.2	0.00097	19.6	0.1	1.8	2	0	0	2	2	2	1	CopG	antitoxin	of	type	II	toxin-antitoxin	system
HicB	PF05534.12	gi|408404648|ref|YP_006862631.1|	-	0.013	15.3	0.0	0.027	14.3	0.0	1.5	1	0	0	1	1	1	0	HicB	family
BrnA_antitoxin	PF14384.6	gi|408404648|ref|YP_006862631.1|	-	0.1	13.1	0.0	0.21	12.1	0.0	1.6	1	0	0	1	1	1	0	BrnA	antitoxin	of	type	II	toxin-antitoxin	system
RHH_1	PF01402.21	gi|408404648|ref|YP_006862631.1|	-	0.22	11.5	1.1	0.44	10.5	0.2	2.0	2	0	0	2	2	2	0	Ribbon-helix-helix	protein,	copG	family
SnoaL_2	PF12680.7	gi|408404649|ref|YP_006862632.1|	-	0.00016	22.2	0.0	0.00025	21.6	0.0	1.4	1	1	0	1	1	1	1	SnoaL-like	domain
SnoaL_4	PF13577.6	gi|408404649|ref|YP_006862632.1|	-	0.00034	20.7	0.0	0.00064	19.9	0.0	1.5	1	1	0	1	1	1	1	SnoaL-like	domain
NTF2	PF02136.20	gi|408404649|ref|YP_006862632.1|	-	0.0019	18.8	0.0	0.0023	18.5	0.0	1.3	1	1	0	1	1	1	1	Nuclear	transport	factor	2	(NTF2)	domain
Usp	PF00582.26	gi|408404650|ref|YP_006862633.1|	-	3.3e-29	102.2	0.2	3.9e-29	102.0	0.2	1.1	1	0	0	1	1	1	1	Universal	stress	protein	family
DUF1272	PF06906.11	gi|408404651|ref|YP_006862634.1|	-	0.046	13.8	2.5	0.077	13.1	2.5	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1272)
ADK_lid	PF05191.14	gi|408404651|ref|YP_006862634.1|	-	0.097	12.7	2.6	7	6.7	0.0	2.4	1	1	1	2	2	2	0	Adenylate	kinase,	active	site	lid
DUF1451	PF07295.11	gi|408404651|ref|YP_006862634.1|	-	0.19	11.8	1.0	0.23	11.5	1.0	1.2	1	0	0	1	1	1	0	Zinc-ribbon	containing	domain
NRDD	PF13597.6	gi|408404651|ref|YP_006862634.1|	-	0.84	8.3	2.4	1.1	8.0	2.4	1.1	1	0	0	1	1	1	0	Anaerobic	ribonucleoside-triphosphate	reductase
zf-C2H2_2	PF12756.7	gi|408404652|ref|YP_006862635.1|	-	4.2e-06	27.0	0.0	0.14	12.5	0.0	2.2	2	0	0	2	2	2	2	C2H2	type	zinc-finger	(2	copies)
Zn-ribbon_8	PF09723.10	gi|408404652|ref|YP_006862635.1|	-	0.036	14.2	0.6	3.1	8.0	0.0	2.6	2	0	0	2	2	2	0	Zinc	ribbon	domain
zf-C2H2_jaz	PF12171.8	gi|408404652|ref|YP_006862635.1|	-	0.29	11.5	6.5	1	9.7	0.2	2.3	2	0	0	2	2	2	0	Zinc-finger	double-stranded	RNA-binding
TFIIS_C	PF01096.18	gi|408404652|ref|YP_006862635.1|	-	2.7	7.9	6.0	9.3	6.2	0.4	2.3	2	0	0	2	2	2	0	Transcription	factor	S-II	(TFIIS)
Cu-oxidase_3	PF07732.15	gi|408404653|ref|YP_006862636.1|	-	4.3e-26	91.3	4.9	1.3e-21	76.8	0.2	3.3	3	0	0	3	3	3	2	Multicopper	oxidase
Cu-oxidase_2	PF07731.14	gi|408404653|ref|YP_006862636.1|	-	2.5e-23	82.3	2.9	2.5e-11	43.4	0.0	3.5	4	0	0	4	4	4	3	Multicopper	oxidase
Cupredoxin_1	PF13473.6	gi|408404653|ref|YP_006862636.1|	-	3.4e-11	43.2	0.0	3.1e-07	30.4	0.0	3.6	3	1	0	3	3	3	2	Cupredoxin-like	domain
Copper-bind	PF00127.20	gi|408404653|ref|YP_006862636.1|	-	1e-10	41.9	2.7	4.1e-07	30.4	0.1	3.6	2	2	0	2	2	2	2	Copper	binding	proteins,	plastocyanin/azurin	family
Cu-oxidase	PF00394.22	gi|408404653|ref|YP_006862636.1|	-	0.00058	20.0	0.0	0.088	12.9	0.0	3.1	2	1	1	3	3	3	1	Multicopper	oxidase
HSP20	PF00011.21	gi|408404654|ref|YP_006862637.1|	-	5e-22	78.0	3.6	5e-22	78.0	3.6	1.3	2	0	0	2	2	2	1	Hsp20/alpha	crystallin	family
ArsA_HSP20	PF17886.1	gi|408404654|ref|YP_006862637.1|	-	2.1e-09	36.8	0.0	4e-09	35.9	0.0	1.5	1	0	0	1	1	1	1	HSP20-like	domain	found	in	ArsA
FKBP26_C	PF18046.1	gi|408404654|ref|YP_006862637.1|	-	0.11	12.6	1.3	2.2	8.4	0.1	2.4	2	0	0	2	2	2	0	FKBP26_C-terminal
zinc_ribbon_2	PF13240.6	gi|408404655|ref|YP_006862638.1|	-	0.065	13.0	0.8	0.065	13.0	0.8	2.5	3	0	0	3	3	3	0	zinc-ribbon	domain
DZR	PF12773.7	gi|408404655|ref|YP_006862638.1|	-	0.083	12.9	8.3	0.36	10.9	8.3	2.0	1	1	0	1	1	1	0	Double	zinc	ribbon
ADK_lid	PF05191.14	gi|408404655|ref|YP_006862638.1|	-	0.26	11.3	6.6	4.9	7.2	0.2	2.2	2	0	0	2	2	2	0	Adenylate	kinase,	active	site	lid
CBS	PF00571.28	gi|408404657|ref|YP_006862640.1|	-	3.4e-22	78.6	5.3	1.2e-11	44.9	0.3	2.2	2	0	0	2	2	2	2	CBS	domain
COX1	PF00115.20	gi|408404659|ref|YP_006862642.1|	-	0.00019	20.5	11.1	0.00019	20.5	11.1	2.3	1	1	1	3	3	3	1	Cytochrome	C	and	Quinol	oxidase	polypeptide	I
DUF4500	PF14937.6	gi|408404659|ref|YP_006862642.1|	-	3.8	7.6	6.2	2.5	8.2	0.3	2.4	2	1	0	2	2	2	0	Domain	of	unknown	function	(DUF4500)
CBS	PF00571.28	gi|408404660|ref|YP_006862643.1|	-	1.3e-23	83.2	1.0	2e-11	44.2	0.1	2.6	3	0	0	3	3	3	2	CBS	domain
MarR_2	PF12802.7	gi|408404660|ref|YP_006862643.1|	-	0.003	17.4	0.0	0.011	15.6	0.0	1.9	2	0	0	2	2	2	1	MarR	family
UPF0122	PF04297.14	gi|408404660|ref|YP_006862643.1|	-	0.024	14.8	0.9	0.06	13.6	0.9	1.5	1	1	0	1	1	1	0	Putative	helix-turn-helix	protein,	YlxM	/	p13	like
HTH_24	PF13412.6	gi|408404660|ref|YP_006862643.1|	-	0.03	13.9	0.0	0.056	13.0	0.0	1.5	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
Sigma70_r4_2	PF08281.12	gi|408404660|ref|YP_006862643.1|	-	0.061	13.0	0.1	0.32	10.7	0.1	2.1	2	0	0	2	2	2	0	Sigma-70,	region	4
MarR	PF01047.22	gi|408404660|ref|YP_006862643.1|	-	0.062	13.2	0.0	0.13	12.2	0.0	1.5	1	0	0	1	1	1	0	MarR	family
PCI	PF01399.27	gi|408404660|ref|YP_006862643.1|	-	0.075	13.5	0.8	0.14	12.7	0.8	1.5	1	0	0	1	1	1	0	PCI	domain
HTH_IclR	PF09339.10	gi|408404660|ref|YP_006862643.1|	-	0.14	12.0	0.0	0.83	9.5	0.0	2.1	2	0	0	2	2	2	0	IclR	helix-turn-helix	domain
NAD_kinase	PF01513.21	gi|408404661|ref|YP_006862644.1|	-	0.00031	20.0	0.2	0.0057	15.9	0.0	2.2	2	0	0	2	2	2	2	ATP-NAD	kinase
Usp	PF00582.26	gi|408404662|ref|YP_006862645.1|	-	3.2e-34	118.5	0.3	3.9e-34	118.2	0.3	1.1	1	0	0	1	1	1	1	Universal	stress	protein	family
PnpCD_PnpD_N	PF18191.1	gi|408404662|ref|YP_006862645.1|	-	0.016	14.8	0.0	0.02	14.5	0.0	1.2	1	0	0	1	1	1	0	Hydroquinone	1,2-dioxygenase	large	subunit	N-terminal
P-II	PF00543.22	gi|408404664|ref|YP_006862647.1|	-	6.8e-16	58.7	0.1	7.7e-16	58.6	0.1	1.0	1	0	0	1	1	1	1	Nitrogen	regulatory	protein	P-II
PAC2	PF09754.9	gi|408404665|ref|YP_006862648.1|	-	3.4e-42	144.9	0.0	4.1e-42	144.6	0.0	1.1	1	0	0	1	1	1	1	PAC2	family
Vir_act_alpha_C	PF10400.9	gi|408404665|ref|YP_006862648.1|	-	0.11	13.2	1.3	0.11	13.2	1.3	1.9	3	0	0	3	3	3	0	Virulence	activator	alpha	C-term
DUF4715	PF15835.5	gi|408404665|ref|YP_006862648.1|	-	0.12	12.4	0.0	0.19	11.8	0.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4715)
Cpn60_TCP1	PF00118.24	gi|408404666|ref|YP_006862649.1|	-	7.7e-170	565.7	19.6	8.7e-170	565.5	19.6	1.0	1	0	0	1	1	1	1	TCP-1/cpn60	chaperonin	family
Methylase_S	PF01420.19	gi|408404668|ref|YP_006862651.1|	-	0.00068	19.9	0.1	0.00083	19.6	0.1	1.1	1	0	0	1	1	1	1	Type	I	restriction	modification	DNA	specificity	domain
Sif	PF06767.11	gi|408404668|ref|YP_006862651.1|	-	0.027	13.5	0.2	0.033	13.2	0.2	1.1	1	0	0	1	1	1	0	Sif	protein
DUF2294	PF10057.9	gi|408404669|ref|YP_006862652.1|	-	0.12	12.5	0.1	0.17	12.0	0.1	1.2	1	0	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2294)
PHA_synth_III_E	PF09712.10	gi|408404672|ref|YP_006862655.1|	-	1.1e-21	77.2	2.4	3.4e-21	75.6	0.1	1.9	1	1	1	2	2	2	1	Poly(R)-hydroxyalkanoic	acid	synthase	subunit	(PHA_synth_III_E)
DUF2730	PF10805.8	gi|408404672|ref|YP_006862655.1|	-	0.00046	20.2	0.0	0.34	11.0	0.1	2.8	2	1	1	3	3	3	2	Protein	of	unknown	function	(DUF2730)
Phasin	PF05597.11	gi|408404672|ref|YP_006862655.1|	-	0.038	14.0	0.1	0.098	12.7	0.1	1.7	1	1	1	2	2	2	0	Poly(hydroxyalcanoate)	granule	associated	protein	(phasin)
SRP1_TIP1	PF00660.17	gi|408404672|ref|YP_006862655.1|	-	0.067	13.3	0.2	0.46	10.6	0.1	2.5	2	1	0	2	2	2	0	Seripauperin	and	TIP1	family
SHNi-TPR	PF10516.9	gi|408404672|ref|YP_006862655.1|	-	0.25	10.8	0.8	10	5.6	0.0	2.5	2	0	0	2	2	2	0	SHNi-TPR
Abhydrolase_1	PF00561.20	gi|408404673|ref|YP_006862656.1|	-	1.4e-17	64.2	0.0	9.7e-17	61.5	0.0	1.9	1	1	0	1	1	1	1	alpha/beta	hydrolase	fold
PhaC_N	PF07167.13	gi|408404673|ref|YP_006862656.1|	-	5.3e-11	42.5	0.0	9.2e-11	41.7	0.0	1.4	1	0	0	1	1	1	1	Poly-beta-hydroxybutyrate	polymerase	(PhaC)	N-terminus
Hydrolase_4	PF12146.8	gi|408404673|ref|YP_006862656.1|	-	6.8e-11	41.9	0.0	8.7e-10	38.3	0.0	2.3	1	1	0	1	1	1	1	Serine	aminopeptidase,	S33
PHB_depo_C	PF06850.11	gi|408404673|ref|YP_006862656.1|	-	0.00035	20.1	0.0	0.0051	16.3	0.0	2.1	2	0	0	2	2	2	1	PHB	de-polymerase	C-terminus
DLH	PF01738.18	gi|408404673|ref|YP_006862656.1|	-	0.00051	19.7	0.0	0.11	12.0	0.0	2.8	2	1	0	2	2	2	1	Dienelactone	hydrolase	family
FSH1	PF03959.13	gi|408404673|ref|YP_006862656.1|	-	0.0095	15.6	0.1	0.14	11.8	0.0	2.4	2	1	0	2	2	2	1	Serine	hydrolase	(FSH1)
BAAT_C	PF08840.11	gi|408404673|ref|YP_006862656.1|	-	0.01	15.8	0.2	0.34	10.8	0.0	2.6	3	0	0	3	3	3	1	BAAT	/	Acyl-CoA	thioester	hydrolase	C	terminal
PDDEXK_10	PF07788.11	gi|408404673|ref|YP_006862656.1|	-	0.058	13.3	1.0	0.11	12.4	0.1	2.0	2	0	0	2	2	2	0	PD-(D/E)XK	nuclease	superfamily
Peptidase_S9	PF00326.21	gi|408404673|ref|YP_006862656.1|	-	0.15	11.5	0.1	9.2	5.7	0.0	2.6	3	0	0	3	3	3	0	Prolyl	oligopeptidase	family
Spt5-NGN	PF03439.13	gi|408404674|ref|YP_006862657.1|	-	0.031	14.2	0.1	0.041	13.8	0.1	1.3	1	0	0	1	1	1	0	Early	transcription	elongation	factor	of	RNA	pol	II,	NGN	section
DUF538	PF04398.12	gi|408404674|ref|YP_006862657.1|	-	0.092	13.2	0.0	0.1	13.0	0.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function,	DUF538
Hydantoinase_A	PF01968.18	gi|408404676|ref|YP_006862659.1|	-	2.8e-57	194.2	3.7	2.8e-57	194.2	3.7	2.2	2	0	0	2	2	2	1	Hydantoinase/oxoprolinase
Hydant_A_N	PF05378.13	gi|408404676|ref|YP_006862659.1|	-	2.4e-24	86.0	8.4	4.9e-23	81.7	3.5	3.3	3	1	0	3	3	3	2	Hydantoinase/oxoprolinase	N-terminal	region
MutL	PF13941.6	gi|408404676|ref|YP_006862659.1|	-	5.4e-07	28.6	2.8	3.7e-05	22.5	0.8	2.4	2	0	0	2	2	2	2	MutL	protein
FGGY_N	PF00370.21	gi|408404676|ref|YP_006862659.1|	-	1.5e-05	24.7	1.4	4.8e-05	23.0	1.4	1.9	1	1	0	1	1	1	1	FGGY	family	of	carbohydrate	kinases,	N-terminal	domain
BcrAD_BadFG	PF01869.20	gi|408404676|ref|YP_006862659.1|	-	2.1e-05	24.2	2.8	0.00092	18.8	2.8	3.3	1	1	0	1	1	1	1	BadF/BadG/BcrA/BcrD	ATPase	family
FtsA	PF14450.6	gi|408404676|ref|YP_006862659.1|	-	0.6	10.6	9.2	1.9	9.0	0.2	3.8	3	1	0	3	3	3	0	Cell	division	protein	FtsA
Sua5_yciO_yrdC	PF01300.18	gi|408404677|ref|YP_006862660.1|	-	2.7e-51	173.6	0.0	3.1e-51	173.4	0.0	1.0	1	0	0	1	1	1	1	Telomere	recombination
THUMP	PF02926.17	gi|408404678|ref|YP_006862661.1|	-	5e-16	59.1	0.7	5.9e-16	58.9	0.7	1.2	1	0	0	1	1	1	1	THUMP	domain
Putative_PNPOx	PF01243.20	gi|408404679|ref|YP_006862662.1|	-	1.8e-09	37.7	0.0	2.2e-09	37.3	0.0	1.2	1	0	0	1	1	1	1	Pyridoxamine	5'-phosphate	oxidase
Pyridox_ox_2	PF12900.7	gi|408404679|ref|YP_006862662.1|	-	0.0022	18.0	0.0	0.0033	17.4	0.0	1.3	1	1	0	1	1	1	1	Pyridoxamine	5'-phosphate	oxidase
F420H2_quin_red	PF04075.14	gi|408404679|ref|YP_006862662.1|	-	0.0029	17.7	0.0	0.0044	17.1	0.0	1.4	1	1	0	1	1	1	1	F420H(2)-dependent	quinone	reductase
ThiS	PF02597.20	gi|408404680|ref|YP_006862663.1|	-	6.9e-08	33.0	1.0	5.5e-07	30.1	0.2	2.5	3	0	0	3	3	3	1	ThiS	family
CGI-121	PF08617.10	gi|408404680|ref|YP_006862663.1|	-	1.6e-07	31.6	0.0	2.4e-07	31.0	0.0	1.3	1	0	0	1	1	1	1	Kinase	binding	protein	CGI-121
Urm1	PF09138.11	gi|408404680|ref|YP_006862663.1|	-	0.06	13.7	0.1	0.27	11.6	0.0	2.2	2	1	0	2	2	2	0	Urm1	(Ubiquitin	related	modifier)
DUF1967	PF09269.11	gi|408404680|ref|YP_006862663.1|	-	0.36	10.8	1.9	8.5	6.4	0.1	2.8	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF1967)
Ribosomal_S17e	PF00833.18	gi|408404681|ref|YP_006862664.1|	-	2.3e-14	53.3	0.1	2.4e-14	53.3	0.1	1.0	1	0	0	1	1	1	1	Ribosomal	S17
DUF4054	PF13262.6	gi|408404681|ref|YP_006862664.1|	-	0.032	14.2	0.2	0.034	14.2	0.2	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF4054)
TatD_DNase	PF01026.21	gi|408404682|ref|YP_006862665.1|	-	1.6e-40	139.1	0.0	1.9e-40	138.9	0.0	1.0	1	0	0	1	1	1	1	TatD	related	DNase
DUF3791	PF12668.7	gi|408404682|ref|YP_006862665.1|	-	0.14	12.3	0.0	0.37	10.9	0.0	1.7	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3791)
CBFD_NFYB_HMF	PF00808.23	gi|408404683|ref|YP_006862666.1|	-	9.7e-16	57.8	0.2	1.1e-15	57.7	0.2	1.1	1	0	0	1	1	1	1	Histone-like	transcription	factor	(CBF/NF-Y)	and	archaeal	histone
Histone	PF00125.24	gi|408404683|ref|YP_006862666.1|	-	6.4e-08	33.0	0.2	7.4e-08	32.8	0.2	1.0	1	0	0	1	1	1	1	Core	histone	H2A/H2B/H3/H4
CENP-T_C	PF15511.6	gi|408404683|ref|YP_006862666.1|	-	7.9e-06	26.0	0.1	8.8e-06	25.8	0.1	1.0	1	0	0	1	1	1	1	Centromere	kinetochore	component	CENP-T	histone	fold
CENP-S	PF15630.6	gi|408404683|ref|YP_006862666.1|	-	0.00083	19.7	0.1	0.0009	19.6	0.1	1.2	1	0	0	1	1	1	1	CENP-S	protein
TAF	PF02969.17	gi|408404683|ref|YP_006862666.1|	-	0.0021	18.2	0.4	0.0026	17.9	0.4	1.1	1	0	0	1	1	1	1	TATA	box	binding	protein	associated	factor	(TAF)
GPW_gp25	PF04965.14	gi|408404683|ref|YP_006862666.1|	-	0.0067	16.2	0.0	0.0072	16.1	0.0	1.1	1	0	0	1	1	1	1	Gene	25-like	lysozyme
Bromo_TP	PF07524.13	gi|408404683|ref|YP_006862666.1|	-	0.015	15.3	0.0	0.017	15.1	0.0	1.1	1	0	0	1	1	1	0	Bromodomain	associated
TFIID-31kDa	PF02291.15	gi|408404683|ref|YP_006862666.1|	-	0.016	15.3	0.0	0.019	15.1	0.0	1.0	1	0	0	1	1	1	0	Transcription	initiation	factor	IID,	31kD	subunit
TFIID-18kDa	PF02269.16	gi|408404683|ref|YP_006862666.1|	-	0.023	14.7	0.0	0.025	14.6	0.0	1.1	1	0	0	1	1	1	0	Transcription	initiation	factor	IID,	18kD	subunit
Catalase-rel	PF06628.12	gi|408404683|ref|YP_006862666.1|	-	0.11	12.7	0.0	0.14	12.4	0.0	1.2	1	0	0	1	1	1	0	Catalase-related	immune-responsive
YcaO_C	PF18381.1	gi|408404685|ref|YP_006862668.1|	-	0.023	14.6	0.1	0.025	14.5	0.1	1.1	1	0	0	1	1	1	0	YcaO	cyclodehydratase	C-terminal	domain
DUF4149	PF13664.6	gi|408404686|ref|YP_006862669.1|	-	0.0012	19.1	1.0	0.0013	19.0	1.0	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4149)
HypD	PF01924.16	gi|408404686|ref|YP_006862669.1|	-	0.16	11.1	0.3	0.18	10.9	0.3	1.1	1	0	0	1	1	1	0	Hydrogenase	formation	hypA	family
PqqD	PF05402.12	gi|408404689|ref|YP_006862672.1|	-	2.2e-06	27.9	0.0	2.4e-06	27.7	0.0	1.1	1	0	0	1	1	1	1	Coenzyme	PQQ	synthesis	protein	D	(PqqD)
Prok-JAB	PF14464.6	gi|408404690|ref|YP_006862673.1|	-	5.4e-09	35.8	0.2	1.8e-08	34.2	0.2	1.8	1	1	0	1	1	1	1	Prokaryotic	homologs	of	the	JAB	domain
zf-C3HC4_3	PF13920.6	gi|408404691|ref|YP_006862674.1|	-	0.0029	17.4	2.6	0.0037	17.1	2.6	1.2	1	0	0	1	1	1	1	Zinc	finger,	C3HC4	type	(RING	finger)
DZR	PF12773.7	gi|408404691|ref|YP_006862674.1|	-	0.038	14.0	2.2	0.051	13.6	2.2	1.2	1	0	0	1	1	1	0	Double	zinc	ribbon
Prok-RING_4	PF14447.6	gi|408404691|ref|YP_006862674.1|	-	0.29	11.0	3.3	0.6	10.0	3.3	1.5	1	1	0	1	1	1	0	Prokaryotic	RING	finger	family	4
Zn-ribbon_8	PF09723.10	gi|408404692|ref|YP_006862675.1|	-	0.0023	18.0	4.7	0.012	15.7	4.7	1.9	1	1	0	1	1	1	1	Zinc	ribbon	domain
zf-NADH-PPase	PF09297.11	gi|408404692|ref|YP_006862675.1|	-	0.0088	15.7	3.6	0.078	12.7	0.5	2.2	2	0	0	2	2	2	1	NADH	pyrophosphatase	zinc	ribbon	domain
TFIIS_C	PF01096.18	gi|408404692|ref|YP_006862675.1|	-	0.025	14.4	3.5	0.24	11.3	0.2	2.2	2	0	0	2	2	2	0	Transcription	factor	S-II	(TFIIS)
Rax2	PF12768.7	gi|408404692|ref|YP_006862675.1|	-	0.028	13.9	0.3	0.034	13.6	0.3	1.1	1	0	0	1	1	1	0	Cortical	protein	marker	for	cell	polarity
DZR	PF12773.7	gi|408404692|ref|YP_006862675.1|	-	0.037	14.1	0.9	0.051	13.6	0.9	1.2	1	0	0	1	1	1	0	Double	zinc	ribbon
TF_Zn_Ribbon	PF08271.12	gi|408404692|ref|YP_006862675.1|	-	0.048	13.2	1.5	2.4	7.8	0.1	2.1	2	0	0	2	2	2	0	TFIIB	zinc-binding
zinc-ribbons_6	PF07191.12	gi|408404692|ref|YP_006862675.1|	-	0.053	13.5	0.0	0.064	13.2	0.0	1.2	1	0	0	1	1	1	0	zinc-ribbons
HypA	PF01155.19	gi|408404692|ref|YP_006862675.1|	-	0.23	11.5	0.8	0.32	11.0	0.8	1.1	1	0	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
Rubredoxin_2	PF18073.1	gi|408404692|ref|YP_006862675.1|	-	0.56	10.0	5.9	3.2	7.5	5.9	2.2	1	1	0	1	1	1	0	Rubredoxin	metal	binding	domain
zf_UBZ	PF18439.1	gi|408404692|ref|YP_006862675.1|	-	0.66	9.6	2.6	5.6	6.6	0.3	2.1	1	1	1	2	2	2	0	Ubiquitin-Binding	Zinc	Finger
Peptidase_C74	PF12387.8	gi|408404692|ref|YP_006862675.1|	-	0.8	9.1	4.3	0.28	10.6	1.4	1.6	2	0	0	2	2	2	0	Pestivirus	NS2	peptidase
Ogr_Delta	PF04606.12	gi|408404692|ref|YP_006862675.1|	-	2	8.5	4.9	2.7	8.0	0.8	2.2	2	0	0	2	2	2	0	Ogr/Delta-like	zinc	finger
Glyco_hydro_14	PF01373.17	gi|408404693|ref|YP_006862676.1|	-	0.0054	15.7	0.0	0.0059	15.6	0.0	1.1	1	0	0	1	1	1	1	Glycosyl	hydrolase	family	14
T4_Gp59_N	PF08993.10	gi|408404693|ref|YP_006862676.1|	-	0.079	13.4	0.2	0.16	12.4	0.1	1.8	1	1	0	1	1	1	0	T4	gene	Gp59	loader	of	gp41	DNA	helicase
PSD2	PF07624.11	gi|408404693|ref|YP_006862676.1|	-	0.083	12.7	0.0	0.13	12.0	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1585)
MCM	PF00493.23	gi|408404694|ref|YP_006862677.1|	-	3e-07	29.8	0.1	0.0024	17.0	0.0	2.7	1	1	1	2	2	2	2	MCM	P-loop	domain
AAA_3	PF07726.11	gi|408404694|ref|YP_006862677.1|	-	5.5e-05	23.0	0.0	0.0076	16.1	0.0	2.9	3	0	0	3	3	3	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
Sigma54_activat	PF00158.26	gi|408404694|ref|YP_006862677.1|	-	7.3e-05	22.5	0.0	0.00017	21.3	0.0	1.6	2	0	0	2	2	2	1	Sigma-54	interaction	domain
AAA_5	PF07728.14	gi|408404694|ref|YP_006862677.1|	-	0.00088	19.3	0.1	0.068	13.2	0.0	2.2	1	1	1	2	2	2	1	AAA	domain	(dynein-related	subfamily)
AAA	PF00004.29	gi|408404694|ref|YP_006862677.1|	-	0.0036	17.7	0.1	0.021	15.2	0.1	2.2	2	1	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_16	PF13191.6	gi|408404694|ref|YP_006862677.1|	-	0.018	15.4	0.0	0.55	10.6	0.0	2.1	1	1	1	2	2	2	0	AAA	ATPase	domain
AAA_22	PF13401.6	gi|408404694|ref|YP_006862677.1|	-	0.025	14.9	0.0	0.28	11.4	0.0	2.2	1	1	1	2	2	2	0	AAA	domain
DNA_pol3_delta2	PF13177.6	gi|408404694|ref|YP_006862677.1|	-	0.055	13.2	0.1	0.87	9.3	0.1	2.6	3	1	0	3	3	3	0	DNA	polymerase	III,	delta	subunit
RuvB_N	PF05496.12	gi|408404694|ref|YP_006862677.1|	-	0.12	12.1	0.0	0.33	10.7	0.0	1.8	1	1	0	1	1	1	0	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
XPG_I	PF00867.18	gi|408404695|ref|YP_006862678.1|	-	1.1e-24	86.5	0.0	2.6e-24	85.4	0.0	1.6	1	0	0	1	1	1	1	XPG	I-region
XPG_N	PF00752.17	gi|408404695|ref|YP_006862678.1|	-	1.7e-15	57.3	0.0	3.3e-15	56.4	0.0	1.4	1	0	0	1	1	1	1	XPG	N-terminal	domain
5_3_exonuc	PF01367.20	gi|408404695|ref|YP_006862678.1|	-	4.1e-06	27.3	0.0	1e-05	26.0	0.0	1.7	1	0	0	1	1	1	1	5'-3'	exonuclease,	C-terminal	SAM	fold
HHH_5	PF14520.6	gi|408404695|ref|YP_006862678.1|	-	0.0054	17.3	0.0	0.015	15.9	0.0	1.7	1	0	0	1	1	1	1	Helix-hairpin-helix	domain
MIP	PF00230.20	gi|408404696|ref|YP_006862679.1|	-	2.9e-55	187.5	23.3	3.4e-55	187.2	23.3	1.0	1	0	0	1	1	1	1	Major	intrinsic	protein
Ferritin	PF00210.24	gi|408404697|ref|YP_006862680.1|	-	4.9e-19	68.7	0.0	6.5e-19	68.3	0.0	1.1	1	0	0	1	1	1	1	Ferritin-like	domain
Archease	PF01951.16	gi|408404698|ref|YP_006862681.1|	-	1.9e-40	138.3	0.5	2.1e-40	138.1	0.5	1.0	1	0	0	1	1	1	1	Archease	protein	family	(MTH1598/TM1083)
Jag_N	PF14804.6	gi|408404698|ref|YP_006862681.1|	-	0.11	12.9	0.4	0.42	11.0	0.1	2.1	2	0	0	2	2	2	0	Jag	N-terminus
tRNA-synt_His	PF13393.6	gi|408404699|ref|YP_006862682.1|	-	9.6e-38	130.2	0.1	1.4e-37	129.7	0.1	1.2	1	0	0	1	1	1	1	Histidyl-tRNA	synthetase
tRNA-synt_2b	PF00587.25	gi|408404699|ref|YP_006862682.1|	-	3e-11	43.6	0.0	5.4e-11	42.8	0.0	1.5	1	1	0	1	1	1	1	tRNA	synthetase	class	II	core	domain	(G,	H,	P,	S	and	T)
HGTP_anticodon	PF03129.20	gi|408404699|ref|YP_006862682.1|	-	5.9e-11	42.4	2.4	1.6e-10	41.0	0.1	2.2	2	0	0	2	2	2	1	Anticodon	binding	domain
tRNA-synt_2d	PF01409.20	gi|408404699|ref|YP_006862682.1|	-	0.085	12.3	0.0	0.15	11.5	0.0	1.4	1	0	0	1	1	1	0	tRNA	synthetases	class	II	core	domain	(F)
Flavi_NS2A	PF01005.19	gi|408404701|ref|YP_006862684.1|	-	0.12	12.5	0.2	0.16	12.1	0.2	1.2	1	0	0	1	1	1	0	Flavivirus	non-structural	protein	NS2A
FAD_binding_2	PF00890.24	gi|408404702|ref|YP_006862685.1|	-	2.3e-98	330.0	0.2	3.2e-98	329.6	0.2	1.2	1	0	0	1	1	1	1	FAD	binding	domain
Succ_DH_flav_C	PF02910.20	gi|408404702|ref|YP_006862685.1|	-	3.7e-37	127.2	0.4	6.2e-37	126.4	0.4	1.4	1	0	0	1	1	1	1	Fumarate	reductase	flavoprotein	C-term
Pyr_redox_2	PF07992.14	gi|408404702|ref|YP_006862685.1|	-	0.00015	21.1	0.1	0.00086	18.6	0.0	2.1	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
GIDA	PF01134.22	gi|408404702|ref|YP_006862685.1|	-	0.0058	15.8	0.1	0.028	13.5	0.3	1.8	2	0	0	2	2	2	1	Glucose	inhibited	division	protein	A
DAO	PF01266.24	gi|408404702|ref|YP_006862685.1|	-	0.039	13.5	2.7	0.31	10.6	2.7	2.2	1	1	0	1	1	1	0	FAD	dependent	oxidoreductase
HI0933_like	PF03486.14	gi|408404702|ref|YP_006862685.1|	-	0.14	10.8	1.0	0.31	9.7	1.0	1.5	1	0	0	1	1	1	0	HI0933-like	protein
FAD_oxidored	PF12831.7	gi|408404702|ref|YP_006862685.1|	-	0.15	11.4	4.8	0.064	12.6	1.6	2.1	2	1	0	2	2	2	0	FAD	dependent	oxidoreductase
AlaDh_PNT_C	PF01262.21	gi|408404702|ref|YP_006862685.1|	-	0.16	11.2	2.5	0.099	11.9	0.2	1.8	2	0	0	2	2	2	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
Thi4	PF01946.17	gi|408404702|ref|YP_006862685.1|	-	1	8.5	3.9	1.1	8.5	0.7	2.3	2	0	0	2	2	2	0	Thi4	family
Sdh_cyt	PF01127.22	gi|408404703|ref|YP_006862686.1|	-	1.2e-14	54.3	0.3	1.6e-14	54.0	0.3	1.1	1	0	0	1	1	1	1	Succinate	dehydrogenase/Fumarate	reductase	transmembrane	subunit
Fumarate_red_C	PF02300.17	gi|408404703|ref|YP_006862686.1|	-	0.00026	21.1	0.5	0.0011	19.0	0.1	1.8	2	0	0	2	2	2	1	Fumarate	reductase	subunit	C
Fumarate_red_D	PF02313.17	gi|408404703|ref|YP_006862686.1|	-	0.1	12.7	0.4	0.1	12.7	0.4	2.2	2	1	0	2	2	2	0	Fumarate	reductase	subunit	D
DUF1206	PF06724.11	gi|408404703|ref|YP_006862686.1|	-	1	9.5	10.4	6.1	7.0	0.2	3.2	1	1	2	3	3	3	0	Domain	of	Unknown	Function	(DUF1206)
Sdh_cyt	PF01127.22	gi|408404704|ref|YP_006862687.1|	-	1.2e-07	31.8	4.7	1.5e-07	31.4	4.4	1.3	1	1	0	1	1	1	1	Succinate	dehydrogenase/Fumarate	reductase	transmembrane	subunit
DUF4405	PF14358.6	gi|408404704|ref|YP_006862687.1|	-	0.022	15.3	0.9	0.022	15.3	0.9	2.1	2	1	0	2	2	2	0	Domain	of	unknown	function	(DUF4405)
Cytochrome_B	PF00033.19	gi|408404704|ref|YP_006862687.1|	-	0.033	14.0	6.7	0.12	12.2	6.7	1.7	1	1	0	1	1	1	0	Cytochrome	b/b6/petB
DUF808	PF05661.12	gi|408404704|ref|YP_006862687.1|	-	0.047	12.7	6.4	0.76	8.8	0.9	2.1	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF808)
Fumarate_red_D	PF02313.17	gi|408404704|ref|YP_006862687.1|	-	0.089	12.9	4.8	0.12	12.5	4.8	1.1	1	0	0	1	1	1	0	Fumarate	reductase	subunit	D
Ferric_reduct	PF01794.19	gi|408404704|ref|YP_006862687.1|	-	0.096	12.8	6.7	0.24	11.5	6.7	1.6	1	1	0	1	1	1	0	Ferric	reductase	like	transmembrane	component
Fer2_3	PF13085.6	gi|408404705|ref|YP_006862688.1|	-	1.2e-28	99.2	0.1	4.4e-28	97.4	0.0	1.9	2	0	0	2	2	2	1	2Fe-2S	iron-sulfur	cluster	binding	domain
Fer4_8	PF13183.6	gi|408404705|ref|YP_006862688.1|	-	7.2e-12	45.6	1.5	7.2e-12	45.6	1.5	2.3	2	1	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_10	PF13237.6	gi|408404705|ref|YP_006862688.1|	-	3.3e-10	39.9	1.5	3.3e-10	39.9	1.5	2.1	2	0	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_7	PF12838.7	gi|408404705|ref|YP_006862688.1|	-	7.1e-08	32.9	2.8	7.1e-08	32.9	2.8	2.4	2	0	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_17	PF13534.6	gi|408404705|ref|YP_006862688.1|	-	7.6e-08	32.8	3.2	1.1e-07	32.3	0.8	2.3	2	0	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_9	PF13187.6	gi|408404705|ref|YP_006862688.1|	-	1.2e-07	31.7	11.1	1.8e-06	28.0	2.9	2.7	2	1	1	3	3	3	2	4Fe-4S	dicluster	domain
Fer4_16	PF13484.6	gi|408404705|ref|YP_006862688.1|	-	5.5e-07	30.4	1.9	5.5e-07	30.4	1.9	2.4	3	0	0	3	3	3	1	4Fe-4S	double	cluster	binding	domain
Fer2	PF00111.27	gi|408404705|ref|YP_006862688.1|	-	7.2e-06	25.9	0.0	2.2e-05	24.3	0.0	1.8	1	0	0	1	1	1	1	2Fe-2S	iron-sulfur	cluster	binding	domain
Fer4	PF00037.27	gi|408404705|ref|YP_006862688.1|	-	1.3e-05	24.8	1.0	1.3e-05	24.8	1.0	3.0	3	0	0	3	3	3	2	4Fe-4S	binding	domain
Fer4_18	PF13746.6	gi|408404705|ref|YP_006862688.1|	-	9.8e-05	22.5	3.6	0.12	12.6	0.2	2.9	2	1	1	3	3	3	2	4Fe-4S	dicluster	domain
Fer4_6	PF12837.7	gi|408404705|ref|YP_006862688.1|	-	0.0037	17.3	3.2	0.0037	17.3	3.2	3.0	3	0	0	3	3	3	1	4Fe-4S	binding	domain
Fer4_4	PF12800.7	gi|408404705|ref|YP_006862688.1|	-	0.0041	17.5	1.6	0.0041	17.5	1.6	3.2	3	0	0	3	3	3	1	4Fe-4S	binding	domain
Fer4_2	PF12797.7	gi|408404705|ref|YP_006862688.1|	-	0.023	14.8	2.7	0.023	14.8	2.7	3.4	3	0	0	3	3	3	0	4Fe-4S	binding	domain
DUF1815	PF08844.10	gi|408404705|ref|YP_006862688.1|	-	0.071	13.1	0.1	1.1	9.3	0.0	2.4	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF1815)
FlhC	PF05280.11	gi|408404705|ref|YP_006862688.1|	-	0.095	12.4	0.0	0.34	10.6	0.0	1.8	2	0	0	2	2	2	0	Flagellar	transcriptional	activator	(FlhC)
Fer4_15	PF13459.6	gi|408404705|ref|YP_006862688.1|	-	0.43	11.4	2.0	3.4	8.5	0.1	2.7	2	0	0	2	2	2	0	4Fe-4S	single	cluster	domain
Fer4_21	PF14697.6	gi|408404705|ref|YP_006862688.1|	-	1.2	9.3	15.1	0.097	12.8	7.2	2.6	2	1	0	2	2	1	0	4Fe-4S	dicluster	domain
Fer4_22	PF17179.4	gi|408404705|ref|YP_006862688.1|	-	1.7	9.5	12.3	0.94	10.4	2.7	3.3	3	1	0	3	3	3	0	4Fe-4S	dicluster	domain
FeS_assembly_P	PF01883.19	gi|408404706|ref|YP_006862689.1|	-	1.7e-16	60.1	0.0	2.7e-16	59.5	0.0	1.3	1	0	0	1	1	1	1	Iron-sulfur	cluster	assembly	protein
HMA	PF00403.26	gi|408404706|ref|YP_006862689.1|	-	0.0018	18.7	0.1	0.038	14.4	0.0	2.2	2	0	0	2	2	2	1	Heavy-metal-associated	domain
2-Hacid_dh_C	PF02826.19	gi|408404708|ref|YP_006862691.1|	-	2.6e-65	219.1	0.0	3.4e-65	218.7	0.0	1.2	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
2-Hacid_dh	PF00389.30	gi|408404708|ref|YP_006862691.1|	-	1e-25	89.9	0.0	1.2e-25	89.7	0.0	1.0	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	catalytic	domain
NAD_binding_2	PF03446.15	gi|408404708|ref|YP_006862691.1|	-	0.016	15.3	0.0	0.031	14.4	0.0	1.5	1	0	0	1	1	1	0	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
Shikimate_DH	PF01488.20	gi|408404708|ref|YP_006862691.1|	-	0.038	14.0	0.0	0.074	13.1	0.0	1.5	1	0	0	1	1	1	0	Shikimate	/	quinate	5-dehydrogenase
IlvN	PF07991.12	gi|408404708|ref|YP_006862691.1|	-	0.039	13.5	0.1	0.16	11.5	0.0	2.1	2	1	0	2	2	2	0	Acetohydroxy	acid	isomeroreductase,	NADPH-binding	domain
F420_oxidored	PF03807.17	gi|408404708|ref|YP_006862691.1|	-	0.11	13.1	0.0	0.24	12.0	0.0	1.8	1	0	0	1	1	1	0	NADP	oxidoreductase	coenzyme	F420-dependent
Hexapep	PF00132.24	gi|408404709|ref|YP_006862692.1|	-	3.7e-22	77.2	16.8	5.1e-09	35.5	0.3	4.2	2	1	2	5	5	5	5	Bacterial	transferase	hexapeptide	(six	repeats)
Hexapep_2	PF14602.6	gi|408404709|ref|YP_006862692.1|	-	2.4e-13	49.6	9.7	1.3e-05	24.9	1.2	4.2	3	1	1	4	4	4	4	Hexapeptide	repeat	of	succinyl-transferase
Trm112p	PF03966.16	gi|408404710|ref|YP_006862693.1|	-	2.5e-08	34.4	0.4	7.6e-08	32.8	0.4	1.8	1	1	0	1	1	1	1	Trm112p-like	protein
GFO_IDH_MocA	PF01408.22	gi|408404711|ref|YP_006862694.1|	-	4e-27	95.4	0.7	5.9e-27	94.9	0.1	1.6	2	0	0	2	2	2	1	Oxidoreductase	family,	NAD-binding	Rossmann	fold
GFO_IDH_MocA_C	PF02894.17	gi|408404711|ref|YP_006862694.1|	-	3.2e-07	30.3	0.0	9.9e-07	28.8	0.0	1.9	1	1	0	1	1	1	1	Oxidoreductase	family,	C-terminal	alpha/beta	domain
IlvN	PF07991.12	gi|408404711|ref|YP_006862694.1|	-	2.4e-06	27.2	0.1	4.2e-06	26.4	0.1	1.4	1	0	0	1	1	1	1	Acetohydroxy	acid	isomeroreductase,	NADPH-binding	domain
NAD_binding_2	PF03446.15	gi|408404711|ref|YP_006862694.1|	-	0.0013	18.9	0.7	0.0024	18.1	0.1	1.8	2	1	0	2	2	2	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
Shikimate_DH	PF01488.20	gi|408404711|ref|YP_006862694.1|	-	0.0039	17.2	0.2	0.017	15.2	0.0	2.1	2	1	0	2	2	2	1	Shikimate	/	quinate	5-dehydrogenase
2-Hacid_dh_C	PF02826.19	gi|408404711|ref|YP_006862694.1|	-	0.0053	16.1	0.1	0.0094	15.3	0.1	1.4	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
NAD_Gly3P_dh_N	PF01210.23	gi|408404711|ref|YP_006862694.1|	-	0.01	15.8	0.9	0.028	14.4	0.2	2.1	2	1	0	2	2	2	0	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
CoA_binding	PF02629.19	gi|408404711|ref|YP_006862694.1|	-	0.031	15.0	2.4	0.44	11.2	0.2	3.0	2	1	0	2	2	2	0	CoA	binding	domain
PglD_N	PF17836.1	gi|408404711|ref|YP_006862694.1|	-	0.038	14.6	0.1	0.12	13.1	0.1	1.8	1	0	0	1	1	1	0	PglD	N-terminal	domain
DUF2621	PF11084.8	gi|408404711|ref|YP_006862694.1|	-	0.065	13.2	0.0	0.11	12.4	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2621)
AdoHcyase_NAD	PF00670.21	gi|408404711|ref|YP_006862694.1|	-	0.15	12.1	1.6	0.22	11.6	0.2	1.9	2	0	0	2	2	2	0	S-adenosyl-L-homocysteine	hydrolase,	NAD	binding	domain
Aminotran_4	PF01063.19	gi|408404712|ref|YP_006862695.1|	-	1.2e-50	172.4	0.0	1.5e-50	172.2	0.0	1.0	1	0	0	1	1	1	1	Amino-transferase	class	IV
Nif11	PF07862.11	gi|408404712|ref|YP_006862695.1|	-	0.12	12.7	0.0	0.23	11.8	0.0	1.4	1	0	0	1	1	1	0	Nif11	domain
V4R	PF02830.18	gi|408404713|ref|YP_006862696.1|	-	5.9e-12	45.4	0.3	9.4e-12	44.8	0.3	1.4	1	0	0	1	1	1	1	V4R	domain
HAT_KAT11	PF08214.11	gi|408404713|ref|YP_006862696.1|	-	0.022	14.1	0.0	0.027	13.8	0.0	1.1	1	0	0	1	1	1	0	Histone	acetylation	protein
OrfB_Zn_ribbon	PF07282.11	gi|408404715|ref|YP_006862698.1|	-	0.00022	21.1	0.1	0.00025	20.9	0.1	1.2	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
DisA_N	PF02457.16	gi|408404715|ref|YP_006862698.1|	-	0.0074	15.9	0.0	0.0075	15.8	0.0	1.1	1	0	0	1	1	1	1	DisA	bacterial	checkpoint	controller	nucleotide-binding
DUF3606	PF12244.8	gi|408404716|ref|YP_006862699.1|	-	0.021	14.7	0.7	0.27	11.2	0.0	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3606)
SAPIS-gp6	PF16722.5	gi|408404716|ref|YP_006862699.1|	-	0.13	12.7	6.4	0.18	12.3	6.4	1.4	1	1	0	1	1	1	0	Pathogenicity	island	protein	gp6	in	Staphylococcus
Atrophin-1	PF03154.15	gi|408404716|ref|YP_006862699.1|	-	2.3	6.4	5.6	2.1	6.5	5.6	1.0	1	0	0	1	1	1	0	Atrophin-1	family
Alba	PF01918.21	gi|408404717|ref|YP_006862700.1|	-	1.5e-11	43.9	0.1	2e-11	43.5	0.1	1.2	1	0	0	1	1	1	1	Alba
Methyltransf_25	PF13649.6	gi|408404719|ref|YP_006862702.1|	-	1.1e-15	58.1	0.0	2.3e-15	57.0	0.0	1.6	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.6	gi|408404719|ref|YP_006862702.1|	-	5e-15	55.6	0.0	7.8e-15	55.0	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_11	PF08241.12	gi|408404719|ref|YP_006862702.1|	-	1.4e-13	51.3	0.0	2.7e-13	50.4	0.0	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.12	gi|408404719|ref|YP_006862702.1|	-	5.1e-10	40.0	0.0	9.9e-10	39.1	0.0	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.6	gi|408404719|ref|YP_006862702.1|	-	7.7e-09	35.6	0.0	5.8e-08	32.8	0.0	2.0	1	1	0	1	1	1	1	Methyltransferase	domain
Ubie_methyltran	PF01209.18	gi|408404719|ref|YP_006862702.1|	-	4e-08	32.9	0.0	2.1e-07	30.5	0.0	1.9	1	1	1	2	2	2	1	ubiE/COQ5	methyltransferase	family
DREV	PF05219.12	gi|408404719|ref|YP_006862702.1|	-	0.02	14.0	0.0	0.027	13.6	0.0	1.3	1	0	0	1	1	1	0	DREV	methyltransferase
Methyltransf_9	PF08003.11	gi|408404719|ref|YP_006862702.1|	-	0.061	12.2	0.0	0.088	11.7	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1698)
Methyltransf_4	PF02390.17	gi|408404719|ref|YP_006862702.1|	-	0.081	12.4	0.0	0.17	11.3	0.0	1.5	1	0	0	1	1	1	0	Putative	methyltransferase
Trm112p	PF03966.16	gi|408404719|ref|YP_006862702.1|	-	0.16	12.5	0.1	0.3	11.7	0.1	1.5	1	0	0	1	1	1	0	Trm112p-like	protein
SIS	PF01380.22	gi|408404720|ref|YP_006862703.1|	-	1.4e-14	54.1	1.4	1.3e-07	31.5	0.9	2.6	2	1	0	2	2	2	2	SIS	domain
SIS_2	PF13580.6	gi|408404720|ref|YP_006862703.1|	-	0.01	15.8	0.1	0.031	14.3	0.1	1.8	2	0	0	2	2	2	0	SIS	domain
Rhodanese	PF00581.20	gi|408404721|ref|YP_006862704.1|	-	1.2e-40	138.4	0.1	7e-22	78.0	0.0	2.1	2	0	0	2	2	2	2	Rhodanese-like	domain
Fe_dep_repress	PF01325.19	gi|408404723|ref|YP_006862706.1|	-	1.5e-21	76.3	0.8	1.5e-21	76.3	0.8	1.7	2	0	0	2	2	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
Fe_dep_repr_C	PF02742.15	gi|408404723|ref|YP_006862706.1|	-	1.8e-15	56.8	0.2	3.2e-15	55.9	0.2	1.4	1	0	0	1	1	1	1	Iron	dependent	repressor,	metal	binding	and	dimerisation	domain
MarR_2	PF12802.7	gi|408404723|ref|YP_006862706.1|	-	5.3e-05	23.0	0.0	0.00011	22.0	0.0	1.4	1	0	0	1	1	1	1	MarR	family
TrmB	PF01978.19	gi|408404723|ref|YP_006862706.1|	-	6.7e-05	22.7	0.1	0.00015	21.6	0.1	1.6	1	1	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
MarR	PF01047.22	gi|408404723|ref|YP_006862706.1|	-	0.00032	20.6	0.0	0.00086	19.2	0.0	1.8	2	0	0	2	2	2	1	MarR	family
LexA_DNA_bind	PF01726.16	gi|408404723|ref|YP_006862706.1|	-	0.00034	20.3	0.0	0.00087	19.0	0.0	1.7	2	0	0	2	2	2	1	LexA	DNA	binding	domain
HTH_11	PF08279.12	gi|408404723|ref|YP_006862706.1|	-	0.00086	19.2	0.1	0.0026	17.7	0.0	1.9	2	0	0	2	2	2	1	HTH	domain
HTH_DeoR	PF08220.12	gi|408404723|ref|YP_006862706.1|	-	0.0015	18.2	0.0	0.018	14.8	0.0	2.4	1	1	1	2	2	2	1	DeoR-like	helix-turn-helix	domain
HTH_24	PF13412.6	gi|408404723|ref|YP_006862706.1|	-	0.0023	17.5	0.0	0.0044	16.5	0.0	1.5	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_Crp_2	PF13545.6	gi|408404723|ref|YP_006862706.1|	-	0.0025	17.8	0.0	0.0054	16.7	0.0	1.6	1	0	0	1	1	1	1	Crp-like	helix-turn-helix	domain
FeoC	PF09012.10	gi|408404723|ref|YP_006862706.1|	-	0.007	16.4	0.0	0.019	15.0	0.0	1.7	2	0	0	2	2	2	1	FeoC	like	transcriptional	regulator
Rrf2	PF02082.20	gi|408404723|ref|YP_006862706.1|	-	0.011	16.1	0.0	0.027	14.8	0.0	1.6	1	1	1	2	2	2	0	Transcriptional	regulator
HTH_27	PF13463.6	gi|408404723|ref|YP_006862706.1|	-	0.018	15.5	0.1	0.11	13.0	0.0	2.2	2	0	0	2	2	2	0	Winged	helix	DNA-binding	domain
TFIIE_alpha	PF02002.17	gi|408404723|ref|YP_006862706.1|	-	0.03	14.2	0.0	0.058	13.3	0.0	1.5	1	0	0	1	1	1	0	TFIIE	alpha	subunit
PAX	PF00292.18	gi|408404723|ref|YP_006862706.1|	-	0.076	12.9	0.0	0.11	12.4	0.0	1.3	1	0	0	1	1	1	0	'Paired	box'	domain
HTH_6	PF01418.17	gi|408404723|ref|YP_006862706.1|	-	0.08	12.9	0.0	0.17	11.9	0.0	1.6	1	0	0	1	1	1	0	Helix-turn-helix	domain,	rpiR	family
HTH_5	PF01022.20	gi|408404723|ref|YP_006862706.1|	-	0.081	12.8	0.0	0.17	11.7	0.0	1.5	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
HTH_45	PF14947.6	gi|408404723|ref|YP_006862706.1|	-	0.083	12.9	0.9	0.11	12.5	0.1	1.6	2	0	0	2	2	2	0	Winged	helix-turn-helix
PqqD	PF05402.12	gi|408404723|ref|YP_006862706.1|	-	0.084	13.2	0.1	0.32	11.3	0.0	2.2	2	1	0	2	2	1	0	Coenzyme	PQQ	synthesis	protein	D	(PqqD)
IreB	PF06135.12	gi|408404723|ref|YP_006862706.1|	-	0.093	12.9	0.1	0.18	12.0	0.1	1.5	1	0	0	1	1	1	0	IreB	regulatory	phosphoprotein
HTH_micro	PF17007.5	gi|408404723|ref|YP_006862706.1|	-	0.11	11.3	0.0	0.11	11.3	0.0	1.1	1	0	0	1	1	1	0	HTH-like
DDRGK	PF09756.9	gi|408404723|ref|YP_006862706.1|	-	0.12	12.0	0.1	0.22	11.1	0.0	1.6	2	0	0	2	2	2	0	DDRGK	domain
TALPID3	PF15324.6	gi|408404723|ref|YP_006862706.1|	-	0.27	8.8	0.1	0.29	8.8	0.1	1.0	1	0	0	1	1	1	0	Hedgehog	signalling	target
T2SSE	PF00437.20	gi|408404724|ref|YP_006862707.1|	-	1.1e-11	44.3	0.0	2.7e-11	43.1	0.0	1.8	1	1	0	1	1	1	1	Type	II/IV	secretion	system	protein
KH_1	PF00013.29	gi|408404724|ref|YP_006862707.1|	-	2.7e-07	30.3	0.4	9.1e-07	28.6	0.4	2.0	1	0	0	1	1	1	1	KH	domain
AAA_16	PF13191.6	gi|408404724|ref|YP_006862707.1|	-	9e-06	26.2	0.0	2.1e-05	25.0	0.0	1.5	1	0	0	1	1	1	1	AAA	ATPase	domain
PIN_4	PF13638.6	gi|408404724|ref|YP_006862707.1|	-	3.7e-05	24.0	0.2	0.00018	21.8	0.2	2.2	1	1	0	1	1	1	1	PIN	domain
MeaB	PF03308.16	gi|408404724|ref|YP_006862707.1|	-	5.8e-05	22.2	0.0	0.00011	21.3	0.0	1.4	1	0	0	1	1	1	1	Methylmalonyl	Co-A	mutase-associated	GTPase	MeaB
AAA_22	PF13401.6	gi|408404724|ref|YP_006862707.1|	-	9e-05	22.8	0.1	0.011	16.0	0.0	2.4	2	0	0	2	2	2	1	AAA	domain
AAA_25	PF13481.6	gi|408404724|ref|YP_006862707.1|	-	0.00016	21.3	0.0	0.00038	20.1	0.0	1.5	1	0	0	1	1	1	1	AAA	domain
IstB_IS21	PF01695.17	gi|408404724|ref|YP_006862707.1|	-	0.00031	20.5	0.0	0.00069	19.4	0.0	1.5	1	0	0	1	1	1	1	IstB-like	ATP	binding	protein
AAA_18	PF13238.6	gi|408404724|ref|YP_006862707.1|	-	0.00038	21.0	0.0	0.00093	19.8	0.0	1.7	1	0	0	1	1	1	1	AAA	domain
ABC_tran	PF00005.27	gi|408404724|ref|YP_006862707.1|	-	0.00046	20.7	0.0	0.0025	18.3	0.0	2.1	2	0	0	2	2	2	1	ABC	transporter
AAA_14	PF13173.6	gi|408404724|ref|YP_006862707.1|	-	0.00046	20.2	0.0	0.0021	18.1	0.0	2.2	2	0	0	2	2	1	1	AAA	domain
KH_2	PF07650.17	gi|408404724|ref|YP_006862707.1|	-	0.0013	18.5	0.2	0.0056	16.5	0.2	2.1	1	0	0	1	1	1	1	KH	domain
PIN	PF01850.21	gi|408404724|ref|YP_006862707.1|	-	0.0032	17.9	0.5	0.012	16.1	0.5	2.1	1	1	0	1	1	1	1	PIN	domain
AAA_5	PF07728.14	gi|408404724|ref|YP_006862707.1|	-	0.0038	17.2	0.0	0.01	15.8	0.0	1.8	1	0	0	1	1	1	1	AAA	domain	(dynein-related	subfamily)
NTPase_1	PF03266.15	gi|408404724|ref|YP_006862707.1|	-	0.0065	16.4	0.0	0.028	14.4	0.0	2.1	2	0	0	2	2	1	1	NTPase
ATP_bind_1	PF03029.17	gi|408404724|ref|YP_006862707.1|	-	0.0072	16.1	0.0	0.013	15.3	0.0	1.4	1	0	0	1	1	1	1	Conserved	hypothetical	ATP	binding	protein
AAA_30	PF13604.6	gi|408404724|ref|YP_006862707.1|	-	0.0097	15.6	0.0	0.027	14.2	0.0	1.7	1	0	0	1	1	1	1	AAA	domain
PIN_5	PF08745.11	gi|408404724|ref|YP_006862707.1|	-	0.0098	15.3	0.0	0.033	13.6	0.0	1.9	1	1	1	2	2	2	1	PINc	domain	ribonuclease
AAA_33	PF13671.6	gi|408404724|ref|YP_006862707.1|	-	0.012	15.7	0.0	0.031	14.5	0.0	1.7	1	0	0	1	1	1	0	AAA	domain
KTI12	PF08433.10	gi|408404724|ref|YP_006862707.1|	-	0.012	15.0	0.0	0.036	13.5	0.0	1.7	1	0	0	1	1	1	0	Chromatin	associated	protein	KTI12
KH_4	PF13083.6	gi|408404724|ref|YP_006862707.1|	-	0.013	15.3	1.7	0.071	13.0	0.1	2.9	3	0	0	3	3	3	0	KH	domain
Zeta_toxin	PF06414.12	gi|408404724|ref|YP_006862707.1|	-	0.014	14.7	0.0	0.035	13.4	0.0	1.7	1	0	0	1	1	1	0	Zeta	toxin
AAA	PF00004.29	gi|408404724|ref|YP_006862707.1|	-	0.016	15.6	0.0	0.05	14.0	0.0	1.9	1	0	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_29	PF13555.6	gi|408404724|ref|YP_006862707.1|	-	0.02	14.6	0.1	0.065	13.0	0.1	1.8	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
NB-ARC	PF00931.22	gi|408404724|ref|YP_006862707.1|	-	0.021	14.0	0.0	0.042	13.0	0.0	1.4	1	0	0	1	1	1	0	NB-ARC	domain
AAA_28	PF13521.6	gi|408404724|ref|YP_006862707.1|	-	0.022	15.0	0.0	0.042	14.1	0.0	1.6	1	0	0	1	1	1	0	AAA	domain
Mg_chelatase	PF01078.21	gi|408404724|ref|YP_006862707.1|	-	0.036	13.5	0.0	0.076	12.4	0.0	1.5	1	0	0	1	1	1	0	Magnesium	chelatase,	subunit	ChlI
NACHT	PF05729.12	gi|408404724|ref|YP_006862707.1|	-	0.037	14.0	0.0	0.072	13.0	0.0	1.5	1	0	0	1	1	1	0	NACHT	domain
RNA_helicase	PF00910.22	gi|408404724|ref|YP_006862707.1|	-	0.075	13.4	0.0	0.15	12.5	0.0	1.6	1	0	0	1	1	1	0	RNA	helicase
AAA_24	PF13479.6	gi|408404724|ref|YP_006862707.1|	-	0.079	12.7	0.0	0.14	11.9	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
PPV_E1_C	PF00519.17	gi|408404724|ref|YP_006862707.1|	-	0.085	11.7	0.0	0.17	10.7	0.0	1.4	2	0	0	2	2	2	0	Papillomavirus	helicase
AAA_17	PF13207.6	gi|408404724|ref|YP_006862707.1|	-	0.086	13.3	0.1	0.32	11.4	0.1	2.0	1	0	0	1	1	1	0	AAA	domain
Thymidylate_kin	PF02223.17	gi|408404724|ref|YP_006862707.1|	-	0.1	12.2	0.0	0.49	10.0	0.0	1.9	1	1	1	2	2	2	0	Thymidylate	kinase
Hydin_ADK	PF17213.3	gi|408404724|ref|YP_006862707.1|	-	0.14	12.5	0.0	0.26	11.6	0.0	1.4	1	0	0	1	1	1	0	Hydin	Adenylate	kinase-like	domain
P-II	PF00543.22	gi|408404726|ref|YP_006862709.1|	-	2.3e-28	98.8	0.3	2.9e-28	98.4	0.3	1.1	1	0	0	1	1	1	1	Nitrogen	regulatory	protein	P-II
Peptidase_M10	PF00413.24	gi|408404727|ref|YP_006862710.1|	-	2.5e-05	24.2	0.0	3.2e-05	23.8	0.0	1.3	1	1	0	1	1	1	1	Matrixin
Metallopep	PF12044.8	gi|408404727|ref|YP_006862710.1|	-	0.006	15.2	0.0	0.0085	14.7	0.0	1.1	1	0	0	1	1	1	1	Putative	peptidase	family
Peptidase_M66	PF10462.9	gi|408404727|ref|YP_006862710.1|	-	0.006	15.6	0.1	0.0084	15.1	0.1	1.3	1	0	0	1	1	1	1	Peptidase	M66
DUF4953	PF16313.5	gi|408404727|ref|YP_006862710.1|	-	0.02	14.1	0.8	0.074	12.2	0.1	1.9	2	0	0	2	2	2	0	Met-zincin
Peptidase_M54	PF07998.11	gi|408404727|ref|YP_006862710.1|	-	0.021	14.8	0.0	0.04	13.9	0.0	1.4	1	0	0	1	1	1	0	Peptidase	family	M54
Peptidase_M24	PF00557.24	gi|408404728|ref|YP_006862711.1|	-	1.6e-35	122.8	0.1	1.8e-35	122.5	0.1	1.2	1	0	0	1	1	1	1	Metallopeptidase	family	M24
Nudix_N_2	PF14803.6	gi|408404729|ref|YP_006862712.1|	-	0.016	15.1	0.5	0.14	12.1	0.1	2.1	2	0	0	2	2	2	0	Nudix	N-terminal
Zn-ribbon_8	PF09723.10	gi|408404729|ref|YP_006862712.1|	-	0.019	15.1	0.5	0.51	10.5	0.1	2.1	2	0	0	2	2	2	0	Zinc	ribbon	domain
zf-DNL	PF05180.12	gi|408404729|ref|YP_006862712.1|	-	0.029	14.3	1.9	0.042	13.8	1.9	1.2	1	0	0	1	1	1	0	DNL	zinc	finger
Anti-TRAP	PF15777.5	gi|408404729|ref|YP_006862712.1|	-	0.053	13.5	0.3	0.067	13.2	0.3	1.3	1	0	0	1	1	1	0	Tryptophan	RNA-binding	attenuator	protein	inhibitory	protein
HypA	PF01155.19	gi|408404729|ref|YP_006862712.1|	-	0.091	12.8	0.7	0.1	12.6	0.7	1.1	1	0	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
Rubredoxin_2	PF18073.1	gi|408404729|ref|YP_006862712.1|	-	0.13	12.0	5.1	2.3	8.0	0.3	2.2	2	0	0	2	2	2	0	Rubredoxin	metal	binding	domain
zinc_ribbon_6	PF14599.6	gi|408404729|ref|YP_006862712.1|	-	0.14	12.1	3.8	0.35	10.9	3.8	1.7	1	1	0	1	1	1	0	Zinc-ribbon
OrfB_Zn_ribbon	PF07282.11	gi|408404729|ref|YP_006862712.1|	-	0.63	10.0	5.6	1.9	8.5	5.7	1.7	1	1	0	1	1	1	0	Putative	transposase	DNA-binding	domain
DUF1512	PF07431.12	gi|408404730|ref|YP_006862713.1|	-	2.8e-135	450.9	11.8	3.1e-135	450.8	11.8	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1512)
7TM_GPCR_Srz	PF10325.9	gi|408404730|ref|YP_006862713.1|	-	0.53	9.6	3.3	0.25	10.6	0.2	1.8	2	0	0	2	2	2	0	Serpentine	type	7TM	GPCR	chemoreceptor	Srz
Occludin_ELL	PF07303.13	gi|408404732|ref|YP_006862715.1|	-	0.018	15.8	5.4	0.018	15.8	5.4	4.5	1	1	4	5	5	5	0	Occludin	homology	domain
LemA	PF04011.12	gi|408404732|ref|YP_006862715.1|	-	0.02	14.8	22.9	0.022	14.6	6.8	2.7	1	1	1	2	2	2	0	LemA	family
DUF4407	PF14362.6	gi|408404732|ref|YP_006862715.1|	-	0.11	11.8	36.9	0.46	9.8	16.8	2.0	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4407)
UPF0184	PF03670.13	gi|408404732|ref|YP_006862715.1|	-	0.12	12.8	9.6	0.084	13.3	4.0	3.2	2	2	1	3	3	3	0	Uncharacterised	protein	family	(UPF0184)
Spc7	PF08317.11	gi|408404732|ref|YP_006862715.1|	-	0.14	11.0	47.0	0.34	9.8	22.7	2.1	1	1	1	2	2	2	0	Spc7	kinetochore	protein
Vip3A_N	PF12495.8	gi|408404732|ref|YP_006862715.1|	-	0.15	11.9	3.2	1.5	8.7	0.1	2.5	2	0	0	2	2	2	0	Vegetative	insecticide	protein	3A	N	terminal
TelA	PF05816.11	gi|408404732|ref|YP_006862715.1|	-	0.21	10.6	32.7	0.81	8.7	10.9	2.3	1	1	1	2	2	2	0	Toxic	anion	resistance	protein	(TelA)
SHE3	PF17078.5	gi|408404732|ref|YP_006862715.1|	-	0.31	10.7	38.5	6.8	6.3	23.0	2.8	1	1	1	2	2	2	0	SWI5-dependent	HO	expression	protein	3
DUF1664	PF07889.12	gi|408404732|ref|YP_006862715.1|	-	0.94	9.5	25.0	1.1	9.4	2.3	3.7	1	1	4	5	5	5	0	Protein	of	unknown	function	(DUF1664)
FlaC_arch	PF05377.11	gi|408404732|ref|YP_006862715.1|	-	1.7	9.1	22.7	9.7	6.7	5.0	5.1	3	2	2	5	5	5	0	Flagella	accessory	protein	C	(FlaC)
Tweety	PF04906.13	gi|408404732|ref|YP_006862715.1|	-	2.2	6.8	17.8	0.23	10.1	1.1	3.0	1	1	1	3	3	3	0	Tweety
DUF2203	PF09969.9	gi|408404732|ref|YP_006862715.1|	-	2.8	8.7	32.3	0.5	11.1	5.6	3.9	2	1	2	4	4	4	0	Uncharacterized	conserved	protein	(DUF2203)
MscS_porin	PF12795.7	gi|408404732|ref|YP_006862715.1|	-	2.8	7.4	37.3	0.64	9.5	21.3	2.5	1	1	1	2	2	2	0	Mechanosensitive	ion	channel	porin	domain
mCpol	PF18182.1	gi|408404732|ref|YP_006862715.1|	-	3.9	7.8	8.4	0.22	11.9	0.6	2.8	3	1	0	3	3	3	0	minimal	CRISPR	polymerase	domain
DUF724	PF05266.14	gi|408404732|ref|YP_006862715.1|	-	5.6	6.7	47.8	0.62	9.9	11.7	3.2	1	1	2	3	3	3	0	Protein	of	unknown	function	(DUF724)
DUF4192	PF13830.6	gi|408404732|ref|YP_006862715.1|	-	8.8	6.3	9.5	0.45	10.5	2.3	2.0	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4192)
DUF2748	PF10871.8	gi|408404733|ref|YP_006862716.1|	-	0.091	11.4	0.0	0.094	11.3	0.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2748)
DUF4552	PF15089.6	gi|408404733|ref|YP_006862716.1|	-	0.14	11.2	0.0	0.19	10.8	0.0	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4552)
Ubie_methyltran	PF01209.18	gi|408404735|ref|YP_006862718.1|	-	4.4e-20	72.0	0.0	5.4e-20	71.7	0.0	1.1	1	0	0	1	1	1	1	ubiE/COQ5	methyltransferase	family
Methyltransf_11	PF08241.12	gi|408404735|ref|YP_006862718.1|	-	1.1e-18	67.6	0.0	2.2e-18	66.7	0.0	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.6	gi|408404735|ref|YP_006862718.1|	-	7.2e-17	61.9	0.0	1.8e-16	60.6	0.0	1.7	2	0	0	2	2	2	1	Methyltransferase	domain
Methyltransf_31	PF13847.6	gi|408404735|ref|YP_006862718.1|	-	1.8e-10	40.8	0.0	2.5e-10	40.4	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.6	gi|408404735|ref|YP_006862718.1|	-	4.7e-10	39.5	0.0	7.4e-10	38.9	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.12	gi|408404735|ref|YP_006862718.1|	-	1.4e-09	38.6	0.0	2.7e-09	37.6	0.0	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
PrmA	PF06325.13	gi|408404735|ref|YP_006862718.1|	-	4.5e-05	23.0	0.0	8.2e-05	22.1	0.0	1.5	2	0	0	2	2	2	1	Ribosomal	protein	L11	methyltransferase	(PrmA)
Methyltransf_24	PF13578.6	gi|408404735|ref|YP_006862718.1|	-	0.0013	19.8	0.0	0.0029	18.6	0.0	1.7	1	0	0	1	1	1	1	Methyltransferase	domain
MetW	PF07021.12	gi|408404735|ref|YP_006862718.1|	-	0.015	14.9	0.0	0.022	14.4	0.0	1.2	1	0	0	1	1	1	0	Methionine	biosynthesis	protein	MetW
MTS	PF05175.14	gi|408404735|ref|YP_006862718.1|	-	0.073	12.6	0.0	0.14	11.7	0.0	1.5	1	1	0	1	1	1	0	Methyltransferase	small	domain
Ploopntkinase3	PF18751.1	gi|408404735|ref|YP_006862718.1|	-	0.13	12.1	0.0	0.46	10.4	0.0	1.8	2	0	0	2	2	2	0	P-loop	Nucleotide	Kinase3
NodS	PF05401.11	gi|408404735|ref|YP_006862718.1|	-	0.15	11.6	0.0	0.26	10.9	0.0	1.3	1	0	0	1	1	1	0	Nodulation	protein	S	(NodS)
DUF3325	PF11804.8	gi|408404736|ref|YP_006862719.1|	-	0.088	13.0	8.8	0.062	13.5	4.2	2.5	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF3325)
DUF2070	PF09843.9	gi|408404736|ref|YP_006862719.1|	-	0.27	9.5	7.5	0.38	9.0	7.5	1.1	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2070)
DUF2207	PF09972.9	gi|408404736|ref|YP_006862719.1|	-	5.1	5.7	12.4	1.2	7.8	1.1	3.1	1	1	1	3	3	3	0	Predicted	membrane	protein	(DUF2207)
DUF98	PF01947.16	gi|408404737|ref|YP_006862720.1|	-	0.0018	18.3	0.3	0.02	14.9	0.3	2.3	1	1	0	1	1	1	1	p-hydroxybenzoic	acid	synthase
Chordopox_RPO7	PF05864.12	gi|408404737|ref|YP_006862720.1|	-	0.12	12.6	0.6	0.39	11.0	0.2	1.9	2	0	0	2	2	2	0	Chordopoxvirus	DNA-directed	RNA	polymerase	7	kDa	polypeptide	(RPO7)
NUDIX	PF00293.28	gi|408404739|ref|YP_006862722.1|	-	5.9e-19	68.4	0.0	7e-19	68.2	0.0	1.0	1	0	0	1	1	1	1	NUDIX	domain
DUF3357	PF11837.8	gi|408404740|ref|YP_006862723.1|	-	0.0033	17.9	0.1	0.0048	17.3	0.1	1.3	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF3357)
Radical_SAM	PF04055.21	gi|408404741|ref|YP_006862724.1|	-	1.2e-12	48.6	0.0	2.7e-12	47.4	0.0	1.6	2	0	0	2	2	2	1	Radical	SAM	superfamily
NAD_binding_1	PF00175.21	gi|408404743|ref|YP_006862726.1|	-	7e-10	39.5	0.0	1.2e-09	38.8	0.0	1.3	1	0	0	1	1	1	1	Oxidoreductase	NAD-binding	domain
FAD_binding_6	PF00970.24	gi|408404743|ref|YP_006862726.1|	-	1.6e-07	31.6	0.0	2.3e-07	31.1	0.0	1.3	1	0	0	1	1	1	1	Oxidoreductase	FAD-binding	domain
NAD_binding_6	PF08030.12	gi|408404743|ref|YP_006862726.1|	-	0.27	11.3	0.8	1.1	9.3	0.3	2.1	2	1	1	3	3	3	0	Ferric	reductase	NAD	binding	domain
APOBEC3	PF18771.1	gi|408404744|ref|YP_006862727.1|	-	0.017	15.2	0.0	0.58	10.3	0.0	2.5	2	0	0	2	2	2	0	APOBEC3
RVT_3	PF13456.6	gi|408404750|ref|YP_006862733.1|	-	5e-06	26.3	0.0	1.2e-05	25.1	0.0	1.6	1	1	0	1	1	1	1	Reverse	transcriptase-like
MEDS	PF14417.6	gi|408404754|ref|YP_006862737.1|	-	1.6e-10	41.1	0.0	2e-10	40.7	0.0	1.1	1	0	0	1	1	1	1	MEDS:	MEthanogen/methylotroph,	DcmR	Sensory	domain
ATPase	PF06745.13	gi|408404754|ref|YP_006862737.1|	-	1.5e-05	24.5	0.4	1.8e-05	24.2	0.4	1.1	1	0	0	1	1	1	1	KaiC
PEP_mutase	PF13714.6	gi|408404754|ref|YP_006862737.1|	-	0.0056	16.2	0.1	0.0072	15.8	0.1	1.1	1	0	0	1	1	1	1	Phosphoenolpyruvate	phosphomutase
Response_reg	PF00072.24	gi|408404756|ref|YP_006862739.1|	-	1.9e-13	50.5	0.1	8.2e-13	48.5	0.1	1.9	1	1	0	1	1	1	1	Response	regulator	receiver	domain
NTNH_C	PF08470.10	gi|408404756|ref|YP_006862739.1|	-	0.032	14.1	0.0	0.052	13.4	0.0	1.3	1	0	0	1	1	1	0	Nontoxic	nonhaemagglutinin	C-terminal
Phasin_2	PF09361.10	gi|408404756|ref|YP_006862739.1|	-	0.11	12.7	0.1	0.25	11.6	0.0	1.5	2	0	0	2	2	2	0	Phasin	protein
HATPase_c	PF02518.26	gi|408404757|ref|YP_006862740.1|	-	4.7e-27	94.7	1.1	9.8e-27	93.7	0.1	1.9	2	0	0	2	2	2	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HisKA	PF00512.25	gi|408404757|ref|YP_006862740.1|	-	1.5e-13	50.6	1.6	3.7e-13	49.3	1.6	1.7	1	0	0	1	1	1	1	His	Kinase	A	(phospho-acceptor)	domain
MASE3	PF17159.4	gi|408404757|ref|YP_006862740.1|	-	4.4e-11	42.8	23.2	1.1e-05	25.1	4.4	2.3	2	0	0	2	2	2	2	Membrane-associated	sensor	domain
HATPase_c_2	PF13581.6	gi|408404757|ref|YP_006862740.1|	-	0.01	15.8	0.0	0.021	14.8	0.0	1.4	1	0	0	1	1	1	0	Histidine	kinase-like	ATPase	domain
DUF3213	PF11491.8	gi|408404757|ref|YP_006862740.1|	-	0.024	14.8	0.2	0.051	13.8	0.2	1.6	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3213)
PDE4_UCR	PF18100.1	gi|408404759|ref|YP_006862742.1|	-	0.013	16.1	0.5	0.017	15.7	0.5	1.1	1	0	0	1	1	1	0	Phosphodiesterase	4	upstream	conserved	regions	(UCR)
DUF4201	PF13870.6	gi|408404759|ref|YP_006862742.1|	-	0.015	15.0	0.4	0.019	14.7	0.4	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4201)
YkyA	PF10368.9	gi|408404759|ref|YP_006862742.1|	-	0.017	14.8	0.4	0.017	14.8	0.4	1.4	2	0	0	2	2	2	0	Putative	cell-wall	binding	lipoprotein
TetR_C_22	PF17928.1	gi|408404759|ref|YP_006862742.1|	-	0.029	14.7	0.0	0.033	14.5	0.0	1.2	1	0	0	1	1	1	0	Tetracyclin	repressor-like,	C-terminal	domain
Mobilization_B	PF17511.2	gi|408404759|ref|YP_006862742.1|	-	0.054	13.9	0.0	0.056	13.8	0.0	1.1	1	0	0	1	1	1	0	Mobilization	protein	B
AAA	PF00004.29	gi|408404759|ref|YP_006862742.1|	-	0.055	13.9	0.1	0.06	13.8	0.1	1.2	1	0	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
Corona_S2	PF01601.16	gi|408404759|ref|YP_006862742.1|	-	0.07	11.6	0.1	0.07	11.6	0.1	1.0	1	0	0	1	1	1	0	Coronavirus	S2	glycoprotein
Erp_C	PF06780.11	gi|408404759|ref|YP_006862742.1|	-	0.072	13.1	0.1	0.085	12.9	0.1	1.0	1	0	0	1	1	1	0	Erp	protein	C-terminus
IFNGR1	PF07140.11	gi|408404759|ref|YP_006862742.1|	-	0.12	12.4	0.0	0.14	12.3	0.0	1.1	1	0	0	1	1	1	0	Interferon	gamma	receptor	(IFNGR1)
CLZ	PF16526.5	gi|408404759|ref|YP_006862742.1|	-	0.15	12.4	2.0	1.1	9.7	0.5	2.0	1	1	1	2	2	2	0	C-terminal	leucine	zipper	domain	of	cyclic	nucleotide-gated	channels
FAA_hydrolase	PF01557.18	gi|408404761|ref|YP_006862744.1|	-	3.7e-70	236.0	0.0	4.5e-70	235.7	0.0	1.1	1	0	0	1	1	1	1	Fumarylacetoacetate	(FAA)	hydrolase	family
tRNA-synt_1c	PF00749.21	gi|408404762|ref|YP_006862745.1|	-	1.7e-79	267.0	0.0	2.3e-79	266.5	0.0	1.2	1	0	0	1	1	1	1	tRNA	synthetases	class	I	(E	and	Q),	catalytic	domain
tRNA-synt_1c_C	PF03950.18	gi|408404762|ref|YP_006862745.1|	-	4.7e-30	104.7	0.0	8.1e-30	104.0	0.0	1.4	1	0	0	1	1	1	1	tRNA	synthetases	class	I	(E	and	Q),	anti-codon	binding	domain
polyprenyl_synt	PF00348.17	gi|408404763|ref|YP_006862746.1|	-	6.5e-68	228.6	0.0	7.6e-68	228.3	0.0	1.0	1	0	0	1	1	1	1	Polyprenyl	synthetase
FMN_dh	PF01070.18	gi|408404764|ref|YP_006862747.1|	-	1.3e-24	86.9	0.3	2.7e-23	82.6	0.3	2.0	1	1	0	1	1	1	1	FMN-dependent	dehydrogenase
Glu_synthase	PF01645.17	gi|408404764|ref|YP_006862747.1|	-	4.9e-05	22.6	0.4	4.9e-05	22.6	0.4	1.7	2	0	0	2	2	2	1	Conserved	region	in	glutamate	synthase
NMO	PF03060.15	gi|408404764|ref|YP_006862747.1|	-	0.00015	21.3	1.6	0.00018	21.0	0.1	1.8	2	1	0	2	2	2	1	Nitronate	monooxygenase
IMPDH	PF00478.25	gi|408404764|ref|YP_006862747.1|	-	0.0014	17.7	5.2	0.042	12.9	0.1	3.1	2	2	2	4	4	4	2	IMP	dehydrogenase	/	GMP	reductase	domain
DUF561	PF04481.12	gi|408404764|ref|YP_006862747.1|	-	0.098	11.8	0.7	4.7	6.3	0.0	2.6	1	1	0	2	2	2	0	Protein	of	unknown	function	(DUF561)
AA_kinase	PF00696.28	gi|408404765|ref|YP_006862748.1|	-	3.2e-33	115.3	0.3	3.6e-33	115.1	0.3	1.0	1	0	0	1	1	1	1	Amino	acid	kinase	family
HI0933_like	PF03486.14	gi|408404766|ref|YP_006862749.1|	-	0.02	13.6	0.0	0.2	10.4	0.0	2.0	2	0	0	2	2	2	0	HI0933-like	protein
CCB1	PF12046.8	gi|408404766|ref|YP_006862749.1|	-	0.17	11.3	0.0	0.31	10.4	0.0	1.4	1	0	0	1	1	1	0	Cofactor	assembly	of	complex	C	subunit	B
Glyco_hydro_30C	PF17189.4	gi|408404767|ref|YP_006862750.1|	-	0.11	12.7	0.2	5.8	7.2	0.0	2.4	2	1	0	2	2	2	0	Glycosyl	hydrolase	family	30	beta	sandwich	domain
TPR_1	PF00515.28	gi|408404768|ref|YP_006862751.1|	-	1e-28	97.9	7.9	3.2e-14	52.1	2.4	4.7	4	0	0	4	4	4	4	Tetratricopeptide	repeat
TPR_2	PF07719.17	gi|408404768|ref|YP_006862751.1|	-	3.6e-27	92.2	5.0	3e-11	42.5	0.8	4.8	4	0	0	4	4	4	4	Tetratricopeptide	repeat
TPR_8	PF13181.6	gi|408404768|ref|YP_006862751.1|	-	5.2e-19	66.8	10.7	2.7e-10	39.6	1.1	5.2	5	0	0	5	5	5	3	Tetratricopeptide	repeat
TPR_11	PF13414.6	gi|408404768|ref|YP_006862751.1|	-	2e-18	65.8	5.4	6.5e-09	35.3	0.8	4.5	1	1	3	4	4	4	3	TPR	repeat
TPR_17	PF13431.6	gi|408404768|ref|YP_006862751.1|	-	5.8e-15	54.5	4.4	2.7e-05	24.2	0.0	3.9	4	0	0	4	4	3	3	Tetratricopeptide	repeat
TPR_16	PF13432.6	gi|408404768|ref|YP_006862751.1|	-	1.9e-14	54.0	0.0	6.8e-08	33.0	0.0	2.8	1	1	1	3	3	3	2	Tetratricopeptide	repeat
TPR_19	PF14559.6	gi|408404768|ref|YP_006862751.1|	-	2.6e-13	50.3	0.2	8.8e-07	29.3	0.0	3.1	2	1	2	4	4	4	3	Tetratricopeptide	repeat
TPR_9	PF13371.6	gi|408404768|ref|YP_006862751.1|	-	6.6e-13	48.6	0.0	8.7e-06	25.8	0.2	2.6	1	1	2	3	3	3	3	Tetratricopeptide	repeat
TPR_14	PF13428.6	gi|408404768|ref|YP_006862751.1|	-	4.7e-12	45.7	0.1	1.1e-05	25.8	0.1	4.4	2	1	2	4	4	4	2	Tetratricopeptide	repeat
TPR_12	PF13424.6	gi|408404768|ref|YP_006862751.1|	-	2.8e-10	40.3	1.0	3.1e-05	24.2	0.1	3.6	1	1	2	3	3	3	2	Tetratricopeptide	repeat
ANAPC3	PF12895.7	gi|408404768|ref|YP_006862751.1|	-	1.9e-09	37.6	2.4	1.4e-08	34.8	0.4	2.4	1	1	1	2	2	2	1	Anaphase-promoting	complex,	cyclosome,	subunit	3
Fis1_TPR_C	PF14853.6	gi|408404768|ref|YP_006862751.1|	-	1.3e-08	34.8	0.5	0.0013	18.8	0.2	2.6	1	1	1	2	2	2	2	Fis1	C-terminal	tetratricopeptide	repeat
TPR_7	PF13176.6	gi|408404768|ref|YP_006862751.1|	-	1.1e-07	31.4	0.2	0.013	15.5	0.0	3.4	3	0	0	3	3	2	2	Tetratricopeptide	repeat
TPR_6	PF13174.6	gi|408404768|ref|YP_006862751.1|	-	1.5e-06	28.5	2.7	0.0068	17.0	0.0	4.2	5	0	0	5	5	4	2	Tetratricopeptide	repeat
YfiO	PF13525.6	gi|408404768|ref|YP_006862751.1|	-	0.00038	20.2	0.5	0.09	12.5	0.0	2.5	2	1	1	3	3	3	1	Outer	membrane	lipoprotein
TPR_10	PF13374.6	gi|408404768|ref|YP_006862751.1|	-	0.00064	19.5	0.3	0.26	11.2	0.0	3.6	3	0	0	3	3	3	1	Tetratricopeptide	repeat
NARP1	PF12569.8	gi|408404768|ref|YP_006862751.1|	-	0.0017	17.4	0.1	0.068	12.1	0.1	2.1	1	1	1	2	2	2	1	NMDA	receptor-regulated	protein	1
Vps4_C	PF09336.10	gi|408404768|ref|YP_006862751.1|	-	0.053	13.5	0.1	0.21	11.6	0.0	2.1	2	0	0	2	2	2	0	Vps4	C	terminal	oligomerisation	domain
TPR_20	PF14561.6	gi|408404768|ref|YP_006862751.1|	-	0.082	13.3	0.0	1	9.7	0.0	2.6	1	1	1	2	2	2	0	Tetratricopeptide	repeat
SPO22	PF08631.10	gi|408404768|ref|YP_006862751.1|	-	1.1	8.7	4.4	6.5	6.1	0.7	3.4	4	1	1	5	5	5	0	Meiosis	protein	SPO22/ZIP4	like
Inos-1-P_synth	PF01658.17	gi|408404769|ref|YP_006862752.1|	-	5.7e-16	58.7	0.1	1.2e-15	57.6	0.0	1.6	2	0	0	2	2	2	1	Myo-inositol-1-phosphate	synthase
NAD_binding_5	PF07994.12	gi|408404769|ref|YP_006862752.1|	-	0.00041	19.8	1.9	0.0016	17.9	0.0	2.2	2	1	0	2	2	2	1	Myo-inositol-1-phosphate	synthase
CoA_binding	PF02629.19	gi|408404769|ref|YP_006862752.1|	-	0.51	11.0	3.1	1	10.1	0.1	2.7	1	1	1	2	2	2	0	CoA	binding	domain
Thi4	PF01946.17	gi|408404770|ref|YP_006862753.1|	-	5.9e-62	209.0	0.0	7.6e-62	208.6	0.0	1.0	1	0	0	1	1	1	1	Thi4	family
FAD_binding_2	PF00890.24	gi|408404770|ref|YP_006862753.1|	-	3e-11	43.1	1.1	3.1e-07	29.8	0.2	2.9	2	1	1	3	3	3	2	FAD	binding	domain
FAD_oxidored	PF12831.7	gi|408404770|ref|YP_006862753.1|	-	4.4e-09	36.2	0.0	6.7e-09	35.6	0.0	1.3	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
FAD_binding_3	PF01494.19	gi|408404770|ref|YP_006862753.1|	-	3e-08	33.3	0.1	4.5e-08	32.7	0.1	1.2	1	0	0	1	1	1	1	FAD	binding	domain
NAD_binding_8	PF13450.6	gi|408404770|ref|YP_006862753.1|	-	1.2e-07	31.8	0.1	2.4e-07	30.9	0.1	1.5	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
Pyr_redox_2	PF07992.14	gi|408404770|ref|YP_006862753.1|	-	6e-07	29.0	0.1	7.5e-07	28.7	0.1	1.2	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
HI0933_like	PF03486.14	gi|408404770|ref|YP_006862753.1|	-	4.1e-06	25.8	0.2	5.7e-06	25.3	0.2	1.2	1	0	0	1	1	1	1	HI0933-like	protein
Pyr_redox_3	PF13738.6	gi|408404770|ref|YP_006862753.1|	-	1.9e-05	24.1	1.6	2.7e-05	23.6	1.6	1.2	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
DAO	PF01266.24	gi|408404770|ref|YP_006862753.1|	-	2.1e-05	24.3	2.6	0.00011	22.0	2.0	2.1	1	1	0	2	2	2	1	FAD	dependent	oxidoreductase
Lycopene_cycl	PF05834.12	gi|408404770|ref|YP_006862753.1|	-	4.5e-05	22.7	0.9	0.00035	19.7	0.9	2.0	1	1	0	1	1	1	1	Lycopene	cyclase	protein
GIDA	PF01134.22	gi|408404770|ref|YP_006862753.1|	-	0.00016	20.9	0.7	0.00025	20.2	0.7	1.3	1	0	0	1	1	1	1	Glucose	inhibited	division	protein	A
Trp_halogenase	PF04820.14	gi|408404770|ref|YP_006862753.1|	-	0.0022	16.9	0.5	0.74	8.6	0.0	2.1	2	0	0	2	2	2	2	Tryptophan	halogenase
Amino_oxidase	PF01593.24	gi|408404770|ref|YP_006862753.1|	-	0.033	13.5	0.0	0.052	12.8	0.0	1.3	1	0	0	1	1	1	0	Flavin	containing	amine	oxidoreductase
ThiF	PF00899.21	gi|408404770|ref|YP_006862753.1|	-	0.074	12.4	0.0	0.41	10.0	0.0	1.9	2	0	0	2	2	2	0	ThiF	family
Pyr_redox	PF00070.27	gi|408404770|ref|YP_006862753.1|	-	0.078	13.5	0.2	0.4	11.3	0.2	2.1	2	0	0	2	2	2	0	Pyridine	nucleotide-disulphide	oxidoreductase
RAI16-like	PF10257.9	gi|408404771|ref|YP_006862754.1|	-	0.057	12.3	0.3	0.055	12.3	0.3	1.0	1	0	0	1	1	1	0	Retinoic	acid	induced	16-like	protein
Ferritin	PF00210.24	gi|408404774|ref|YP_006862757.1|	-	2.9e-21	75.9	2.5	3.5e-21	75.6	2.5	1.0	1	0	0	1	1	1	1	Ferritin-like	domain
Rubrerythrin	PF02915.17	gi|408404774|ref|YP_006862757.1|	-	3.6e-05	24.2	3.8	9.1e-05	22.9	3.8	1.6	1	1	0	1	1	1	1	Rubrerythrin
Ferritin_2	PF13668.6	gi|408404774|ref|YP_006862757.1|	-	6.9e-05	23.1	0.3	8.7e-05	22.7	0.3	1.1	1	0	0	1	1	1	1	Ferritin-like	domain
NTase_sub_bind	PF08780.11	gi|408404774|ref|YP_006862757.1|	-	0.098	12.6	0.0	0.16	12.0	0.0	1.5	1	0	0	1	1	1	0	Nucleotidyltransferase	substrate	binding	protein	like
Get5_C	PF18514.1	gi|408404774|ref|YP_006862757.1|	-	0.41	10.4	2.0	0.55	10.0	0.7	1.9	2	0	0	2	2	2	0	Get5	C-terminal	domain
RNA_POL_M_15KD	PF02150.16	gi|408404775|ref|YP_006862758.1|	-	0.00015	21.6	0.0	0.073	13.0	0.0	2.1	2	0	0	2	2	2	2	RNA	polymerases	M/15	Kd	subunit
GFA	PF04828.14	gi|408404775|ref|YP_006862758.1|	-	0.00053	20.3	0.9	0.0041	17.4	0.0	1.9	1	1	1	2	2	2	1	Glutathione-dependent	formaldehyde-activating	enzyme
Cript	PF10235.9	gi|408404775|ref|YP_006862758.1|	-	0.0043	17.6	1.0	0.0051	17.3	1.0	1.1	1	0	0	1	1	1	1	Microtubule-associated	protein	CRIPT
DZR	PF12773.7	gi|408404775|ref|YP_006862758.1|	-	0.018	15.1	1.0	0.056	13.5	1.0	1.8	1	1	0	1	1	1	0	Double	zinc	ribbon
zinc_ribbon_2	PF13240.6	gi|408404775|ref|YP_006862758.1|	-	0.025	14.3	2.2	1.7	8.5	0.3	2.3	2	0	0	2	2	2	0	zinc-ribbon	domain
C1_1	PF00130.22	gi|408404775|ref|YP_006862758.1|	-	0.032	14.1	2.1	2.8	7.9	0.1	2.1	1	1	1	2	2	2	0	Phorbol	esters/diacylglycerol	binding	domain	(C1	domain)
Nudix_N_2	PF14803.6	gi|408404775|ref|YP_006862758.1|	-	0.035	14.0	0.5	1.9	8.5	0.1	2.2	2	0	0	2	2	2	0	Nudix	N-terminal
PknG_rubred	PF16919.5	gi|408404775|ref|YP_006862758.1|	-	0.07	13.3	0.1	0.077	13.2	0.1	1.1	1	0	0	1	1	1	0	Protein	kinase	G	rubredoxin	domain
DpnI	PF06044.12	gi|408404775|ref|YP_006862758.1|	-	0.092	12.4	0.1	0.1	12.2	0.1	1.1	1	0	0	1	1	1	0	Dam-replacing	family
zf_UBZ	PF18439.1	gi|408404775|ref|YP_006862758.1|	-	0.097	12.3	0.8	2.7	7.6	0.1	2.1	2	0	0	2	2	2	0	Ubiquitin-Binding	Zinc	Finger
DUF2321	PF10083.9	gi|408404775|ref|YP_006862758.1|	-	0.12	11.9	1.3	0.33	10.6	0.2	1.9	1	1	1	2	2	2	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2321)
ADD_DNMT3	PF17980.1	gi|408404775|ref|YP_006862758.1|	-	0.13	12.2	2.6	1.1	9.3	0.1	2.1	1	1	1	2	2	2	0	Cysteine	rich	ADD	domain	in	DNMT3
Cys_rich_KTR	PF14205.6	gi|408404775|ref|YP_006862758.1|	-	0.22	11.4	2.0	0.38	10.6	0.3	2.0	1	1	0	2	2	2	0	Cysteine-rich	KTR
Rpr2	PF04032.16	gi|408404775|ref|YP_006862758.1|	-	0.27	11.6	2.4	3.1	8.1	0.1	2.0	1	1	1	2	2	2	0	RNAse	P	Rpr2/Rpp21/SNM1	subunit	domain
Pyr_redox_2	PF07992.14	gi|408404777|ref|YP_006862760.1|	-	6.4e-56	189.7	0.9	7.4e-56	189.5	0.9	1.0	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_3	PF13738.6	gi|408404777|ref|YP_006862760.1|	-	3.3e-26	92.3	3.0	2.7e-23	82.7	0.3	2.1	2	0	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox	PF00070.27	gi|408404777|ref|YP_006862760.1|	-	2.7e-19	69.5	1.7	7.9e-19	68.0	0.4	2.2	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_binding_2	PF00890.24	gi|408404777|ref|YP_006862760.1|	-	3e-07	29.9	6.0	0.0014	17.8	0.2	4.9	2	2	4	6	6	6	1	FAD	binding	domain
FAD_binding_3	PF01494.19	gi|408404777|ref|YP_006862760.1|	-	2e-06	27.3	1.1	0.043	13.1	0.1	3.1	2	1	1	3	3	3	2	FAD	binding	domain
DAO	PF01266.24	gi|408404777|ref|YP_006862760.1|	-	1.4e-05	24.9	6.7	0.0033	17.1	0.0	4.0	2	2	2	4	4	4	2	FAD	dependent	oxidoreductase
FAD_oxidored	PF12831.7	gi|408404777|ref|YP_006862760.1|	-	3.7e-05	23.2	1.0	0.0021	17.5	0.0	2.8	2	1	1	3	3	3	1	FAD	dependent	oxidoreductase
K_oxygenase	PF13434.6	gi|408404777|ref|YP_006862760.1|	-	6.6e-05	22.2	0.3	0.019	14.1	0.0	2.7	2	1	1	3	3	3	2	L-lysine	6-monooxygenase	(NADPH-requiring)
GIDA	PF01134.22	gi|408404777|ref|YP_006862760.1|	-	8.4e-05	21.8	2.2	0.14	11.2	0.1	3.9	3	1	0	4	4	4	2	Glucose	inhibited	division	protein	A
Thi4	PF01946.17	gi|408404777|ref|YP_006862760.1|	-	9.2e-05	21.8	0.9	0.021	14.1	0.1	2.8	2	1	0	2	2	2	2	Thi4	family
NAD_binding_7	PF13241.6	gi|408404777|ref|YP_006862760.1|	-	0.00025	21.4	0.5	0.0069	16.8	0.3	2.5	2	1	0	2	2	2	1	Putative	NAD(P)-binding
NAD_binding_8	PF13450.6	gi|408404777|ref|YP_006862760.1|	-	0.0012	19.0	0.2	0.19	12.0	0.0	2.7	2	0	0	2	2	2	1	NAD(P)-binding	Rossmann-like	domain
HI0933_like	PF03486.14	gi|408404777|ref|YP_006862760.1|	-	0.0034	16.2	0.2	1.1	7.9	0.1	3.2	3	0	0	3	3	3	1	HI0933-like	protein
DUF4083	PF13314.6	gi|408404778|ref|YP_006862761.1|	-	1.6	8.8	7.3	0.43	10.6	0.2	2.2	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4083)
PALP	PF00291.25	gi|408404779|ref|YP_006862762.1|	-	1.2e-63	215.3	0.0	1.5e-63	215.0	0.0	1.1	1	0	0	1	1	1	1	Pyridoxal-phosphate	dependent	enzyme
TusA	PF01206.17	gi|408404780|ref|YP_006862763.1|	-	4.8e-25	87.2	0.0	5.3e-25	87.0	0.0	1.0	1	0	0	1	1	1	1	Sulfurtransferase	TusA
DUF2249	PF10006.9	gi|408404780|ref|YP_006862763.1|	-	0.016	15.1	0.0	0.024	14.5	0.0	1.3	1	0	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2249)
MEDS	PF14417.6	gi|408404782|ref|YP_006862765.1|	-	1e-09	38.4	0.7	1.8e-09	37.7	0.7	1.3	1	0	0	1	1	1	1	MEDS:	MEthanogen/methylotroph,	DcmR	Sensory	domain
Response_reg	PF00072.24	gi|408404782|ref|YP_006862765.1|	-	0.0029	17.8	0.0	0.0057	16.8	0.0	1.5	1	0	0	1	1	1	1	Response	regulator	receiver	domain
Replic_Relax	PF13814.6	gi|408404782|ref|YP_006862765.1|	-	0.082	13.0	0.2	0.69	9.9	0.1	2.1	2	0	0	2	2	2	0	Replication-relaxation
ATPase	PF06745.13	gi|408404782|ref|YP_006862765.1|	-	0.15	11.4	0.0	0.27	10.6	0.0	1.3	1	0	0	1	1	1	0	KaiC
MEDS	PF14417.6	gi|408404784|ref|YP_006862767.1|	-	0.00021	21.2	0.0	0.00029	20.7	0.0	1.2	1	0	0	1	1	1	1	MEDS:	MEthanogen/methylotroph,	DcmR	Sensory	domain
F420_ligase	PF01996.16	gi|408404785|ref|YP_006862768.1|	-	5.4e-58	196.2	2.3	6.6e-58	195.9	2.3	1.0	1	0	0	1	1	1	1	F420-0:Gamma-glutamyl	ligase
Abhydrolase_3	PF07859.13	gi|408404786|ref|YP_006862769.1|	-	2.9e-13	50.2	0.0	2.9e-13	50.2	0.0	1.0	1	0	0	1	1	1	1	alpha/beta	hydrolase	fold
HAD	PF12710.7	gi|408404787|ref|YP_006862770.1|	-	3.3e-15	57.0	0.0	4.2e-15	56.7	0.0	1.1	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Hydrolase	PF00702.26	gi|408404787|ref|YP_006862770.1|	-	1.5e-12	48.3	0.2	2.7e-11	44.1	0.2	2.1	1	1	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Hydrolase_3	PF08282.12	gi|408404787|ref|YP_006862770.1|	-	5.5e-05	23.0	0.1	8.2e-05	22.5	0.1	1.5	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
S6PP	PF05116.13	gi|408404787|ref|YP_006862770.1|	-	0.001	18.6	0.0	0.0014	18.2	0.0	1.2	1	0	0	1	1	1	1	Sucrose-6F-phosphate	phosphohydrolase
HAD_2	PF13419.6	gi|408404787|ref|YP_006862770.1|	-	0.0027	17.8	0.0	0.027	14.6	0.0	2.4	1	1	0	1	1	1	1	Haloacid	dehalogenase-like	hydrolase
Hydrolase_6	PF13344.6	gi|408404787|ref|YP_006862770.1|	-	0.11	12.6	0.0	0.91	9.7	0.0	2.4	1	1	0	1	1	1	0	Haloacid	dehalogenase-like	hydrolase
VWA_2	PF13519.6	gi|408404788|ref|YP_006862771.1|	-	1.7e-07	31.9	0.2	1.1e-06	29.2	0.0	2.5	3	1	0	3	3	3	1	von	Willebrand	factor	type	A	domain
KfrA_N	PF11740.8	gi|408404788|ref|YP_006862771.1|	-	0.067	13.9	3.8	0.12	13.0	3.8	1.4	1	0	0	1	1	1	0	Plasmid	replication	region	DNA-binding	N-term
AAA_5	PF07728.14	gi|408404789|ref|YP_006862772.1|	-	1.7e-09	37.8	0.0	1.7e-05	24.8	0.0	2.4	2	0	0	2	2	2	2	AAA	domain	(dynein-related	subfamily)
Sigma54_activat	PF00158.26	gi|408404789|ref|YP_006862772.1|	-	4.7e-09	36.2	0.0	5.7e-07	29.4	0.0	2.3	2	0	0	2	2	2	1	Sigma-54	interaction	domain
AAA_3	PF07726.11	gi|408404789|ref|YP_006862772.1|	-	3.5e-07	30.1	0.0	7.7e-05	22.6	0.0	3.3	4	0	0	4	4	4	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_PrkA	PF08298.11	gi|408404789|ref|YP_006862772.1|	-	6e-06	25.4	0.1	3.3e-05	23.0	0.1	1.9	1	1	0	1	1	1	1	PrkA	AAA	domain
Mg_chelatase	PF01078.21	gi|408404789|ref|YP_006862772.1|	-	4.9e-05	22.8	0.0	0.45	9.9	0.0	2.8	3	1	0	3	3	3	2	Magnesium	chelatase,	subunit	ChlI
MCM	PF00493.23	gi|408404789|ref|YP_006862772.1|	-	7.8e-05	21.9	0.1	0.0013	17.8	0.0	2.4	3	0	0	3	3	3	1	MCM	P-loop	domain
HAMP_N3	PF18575.1	gi|408404789|ref|YP_006862772.1|	-	0.0011	18.5	0.0	0.0033	17.0	0.0	1.8	1	0	0	1	1	1	1	HAMP	N-terminal	domain	3
AAA	PF00004.29	gi|408404789|ref|YP_006862772.1|	-	0.0045	17.4	0.0	2.3	8.6	0.0	3.4	3	0	0	3	3	3	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
Sigma54_activ_2	PF14532.6	gi|408404789|ref|YP_006862772.1|	-	0.037	14.1	0.5	1.4	9.1	0.0	3.2	4	0	0	4	4	4	0	Sigma-54	interaction	domain
Band_7	PF01145.25	gi|408404789|ref|YP_006862772.1|	-	0.042	13.9	1.0	0.22	11.5	1.0	2.0	1	1	0	1	1	1	0	SPFH	domain	/	Band	7	family
DUF4743	PF15916.5	gi|408404789|ref|YP_006862772.1|	-	0.083	12.9	0.0	0.26	11.2	0.0	2.0	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4743)
Ribosomal_S13	PF00416.22	gi|408404791|ref|YP_006862774.1|	-	1e-38	132.6	0.1	1.2e-38	132.4	0.1	1.1	1	0	0	1	1	1	1	Ribosomal	protein	S13/S18
S4	PF01479.25	gi|408404792|ref|YP_006862775.1|	-	1.7e-11	43.6	2.5	1.6e-09	37.4	0.0	2.6	3	0	0	3	3	3	2	S4	domain
Ribosomal_S4	PF00163.19	gi|408404792|ref|YP_006862775.1|	-	2.5e-05	25.1	1.4	5.8e-05	23.9	0.7	1.9	1	1	1	2	2	2	1	Ribosomal	protein	S4/S9	N-terminal	domain
S_layer_C	PF05124.12	gi|408404793|ref|YP_006862776.1|	-	1.6e-10	41.3	0.1	2.6e-10	40.7	0.1	1.3	1	0	0	1	1	1	1	S-layer	like	family,	C-terminal	region
HTH_20	PF12840.7	gi|408404793|ref|YP_006862776.1|	-	7.3e-06	26.0	0.0	1.3e-05	25.2	0.0	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
TrmB	PF01978.19	gi|408404793|ref|YP_006862776.1|	-	2.7e-05	24.0	0.2	5.9e-05	22.9	0.1	1.6	2	0	0	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
BcsB	PF03170.13	gi|408404793|ref|YP_006862776.1|	-	0.0057	15.1	0.0	0.036	12.5	0.0	1.9	1	1	0	1	1	1	1	Bacterial	cellulose	synthase	subunit
HTH_5	PF01022.20	gi|408404793|ref|YP_006862776.1|	-	0.026	14.4	0.0	0.04	13.8	0.0	1.3	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
DUF4423	PF14394.6	gi|408404793|ref|YP_006862776.1|	-	0.038	13.7	0.0	0.061	13.0	0.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4423)
DUF2250	PF10007.9	gi|408404793|ref|YP_006862776.1|	-	0.098	12.8	0.0	0.2	11.8	0.0	1.4	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
SIS	PF01380.22	gi|408404794|ref|YP_006862777.1|	-	4.6e-53	178.5	3.1	2.9e-28	98.3	1.6	2.5	2	0	0	2	2	2	2	SIS	domain
GATase_6	PF13522.6	gi|408404794|ref|YP_006862777.1|	-	9.1e-21	74.5	0.1	4.3e-20	72.3	0.0	2.1	2	0	0	2	2	2	1	Glutamine	amidotransferase	domain
GATase_7	PF13537.6	gi|408404794|ref|YP_006862777.1|	-	6.1e-16	58.4	0.0	2.5e-15	56.5	0.0	2.1	1	0	0	1	1	1	1	Glutamine	amidotransferase	domain
GATase_4	PF13230.6	gi|408404794|ref|YP_006862777.1|	-	2.7e-05	23.2	0.1	4.6e-05	22.5	0.1	1.3	1	0	0	1	1	1	1	Glutamine	amidotransferases	class-II
SIS_2	PF13580.6	gi|408404794|ref|YP_006862777.1|	-	2.8e-05	24.1	3.5	0.0035	17.4	0.4	3.5	2	1	1	3	3	3	1	SIS	domain
AhpC-TSA	PF00578.21	gi|408404794|ref|YP_006862777.1|	-	0.086	12.8	0.0	4.1	7.3	0.0	2.6	2	0	0	2	2	2	0	AhpC/TSA	family
SET	PF00856.28	gi|408404795|ref|YP_006862778.1|	-	0.00076	19.9	3.3	0.081	13.3	0.0	2.1	1	1	1	2	2	2	2	SET	domain
Snf7	PF03357.21	gi|408404797|ref|YP_006862780.1|	-	3.1e-06	26.9	2.8	5e-06	26.2	2.8	1.3	1	1	0	1	1	1	1	Snf7
LOH1CR12	PF10158.9	gi|408404797|ref|YP_006862780.1|	-	0.022	14.8	0.5	0.036	14.1	0.5	1.3	1	0	0	1	1	1	0	Tumour	suppressor	protein
DUF922	PF06037.11	gi|408404797|ref|YP_006862780.1|	-	0.027	14.2	0.2	0.047	13.5	0.2	1.4	1	0	0	1	1	1	0	Bacterial	protein	of	unknown	function	(DUF922)
Atg14	PF10186.9	gi|408404797|ref|YP_006862780.1|	-	0.046	12.8	5.2	0.06	12.4	5.2	1.1	1	0	0	1	1	1	0	Vacuolar	sorting	38	and	autophagy-related	subunit	14
Nup54	PF13874.6	gi|408404797|ref|YP_006862780.1|	-	0.049	13.7	5.5	0.072	13.2	5.5	1.2	1	0	0	1	1	1	0	Nucleoporin	complex	subunit	54
YlqD	PF11068.8	gi|408404797|ref|YP_006862780.1|	-	0.052	13.9	6.4	0.096	13.1	6.4	1.4	1	0	0	1	1	1	0	YlqD	protein
Uso1_p115_C	PF04871.13	gi|408404797|ref|YP_006862780.1|	-	0.056	13.8	1.7	0.088	13.2	1.7	1.3	1	0	0	1	1	1	0	Uso1	/	p115	like	vesicle	tethering	protein,	C	terminal	region
IFT57	PF10498.9	gi|408404797|ref|YP_006862780.1|	-	0.078	11.9	6.3	0.11	11.4	6.3	1.2	1	0	0	1	1	1	0	Intra-flagellar	transport	protein	57
Exonuc_VII_L	PF02601.15	gi|408404797|ref|YP_006862780.1|	-	0.092	12.3	2.2	0.12	12.0	2.2	1.1	1	0	0	1	1	1	0	Exonuclease	VII,	large	subunit
SOAR	PF16533.5	gi|408404797|ref|YP_006862780.1|	-	0.14	12.1	3.5	0.33	11.0	3.5	1.6	1	0	0	1	1	1	0	STIM1	Orai1-activating	region
DUF1460	PF07313.12	gi|408404797|ref|YP_006862780.1|	-	0.28	10.5	1.3	0.57	9.5	1.3	1.5	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF1460)
LPG_synthase_TM	PF03706.13	gi|408404799|ref|YP_006862782.1|	-	7.4e-22	78.2	19.8	1.1e-21	77.7	19.8	1.2	1	0	0	1	1	1	1	Lysylphosphatidylglycerol	synthase	TM	region
ATP_bind_1	PF03029.17	gi|408404800|ref|YP_006862783.1|	-	4.7e-52	177.2	0.0	5.3e-52	177.0	0.0	1.0	1	0	0	1	1	1	1	Conserved	hypothetical	ATP	binding	protein
AAA_22	PF13401.6	gi|408404800|ref|YP_006862783.1|	-	0.0037	17.5	0.0	0.0084	16.4	0.0	1.7	1	1	0	1	1	1	1	AAA	domain
AAA_16	PF13191.6	gi|408404800|ref|YP_006862783.1|	-	0.013	15.8	0.0	0.02	15.3	0.0	1.5	1	0	0	1	1	1	0	AAA	ATPase	domain
AAA_24	PF13479.6	gi|408404800|ref|YP_006862783.1|	-	0.016	14.9	0.0	0.03	14.1	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
AAA_18	PF13238.6	gi|408404800|ref|YP_006862783.1|	-	0.02	15.4	0.0	0.05	14.2	0.0	1.7	2	1	0	2	2	2	0	AAA	domain
DUF2075	PF09848.9	gi|408404800|ref|YP_006862783.1|	-	0.024	13.9	0.0	0.039	13.2	0.0	1.2	1	0	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2075)
MMR_HSR1	PF01926.23	gi|408404800|ref|YP_006862783.1|	-	0.033	14.3	0.3	1	9.4	0.2	2.7	1	1	1	2	2	2	0	50S	ribosome-binding	GTPase
CLP1_P	PF16575.5	gi|408404800|ref|YP_006862783.1|	-	0.052	13.3	0.0	2.7	7.8	0.0	2.3	2	0	0	2	2	2	0	mRNA	cleavage	and	polyadenylation	factor	CLP1	P-loop
TrwB_AAD_bind	PF10412.9	gi|408404800|ref|YP_006862783.1|	-	0.06	12.2	0.0	0.093	11.6	0.0	1.2	1	0	0	1	1	1	0	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
SRP54	PF00448.22	gi|408404800|ref|YP_006862783.1|	-	0.081	12.5	0.0	9.3	5.8	0.0	2.3	2	0	0	2	2	2	0	SRP54-type	protein,	GTPase	domain
cobW	PF02492.19	gi|408404800|ref|YP_006862783.1|	-	0.086	12.4	0.6	2.2	7.8	0.0	2.7	2	1	1	3	3	3	0	CobW/HypB/UreG,	nucleotide-binding	domain
ATPase	PF06745.13	gi|408404800|ref|YP_006862783.1|	-	0.088	12.1	0.0	2.2	7.6	0.0	2.1	2	0	0	2	2	2	0	KaiC
CbiA	PF01656.23	gi|408404800|ref|YP_006862783.1|	-	0.12	12.4	0.0	0.19	11.8	0.0	1.5	1	1	0	1	1	1	0	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
NTPase_1	PF03266.15	gi|408404800|ref|YP_006862783.1|	-	0.13	12.2	0.0	0.94	9.4	0.0	2.0	2	0	0	2	2	2	0	NTPase
MeaB	PF03308.16	gi|408404800|ref|YP_006862783.1|	-	0.13	11.2	0.0	0.32	9.9	0.0	1.6	2	0	0	2	2	2	0	Methylmalonyl	Co-A	mutase-associated	GTPase	MeaB
NACHT	PF05729.12	gi|408404800|ref|YP_006862783.1|	-	0.14	12.1	0.0	0.25	11.3	0.0	1.4	1	0	0	1	1	1	0	NACHT	domain
GHMP_kinases_N	PF00288.26	gi|408404801|ref|YP_006862784.1|	-	7e-12	45.4	2.2	7e-12	45.4	2.2	2.0	2	0	0	2	2	2	1	GHMP	kinases	N	terminal	domain
GHMP_kinases_C	PF08544.13	gi|408404801|ref|YP_006862784.1|	-	4.2e-07	30.2	0.1	9.9e-07	29.0	0.1	1.6	1	0	0	1	1	1	1	GHMP	kinases	C	terminal
ECH_1	PF00378.20	gi|408404802|ref|YP_006862785.1|	-	4.8e-61	206.2	4.1	2.8e-56	190.6	0.7	2.0	2	0	0	2	2	2	2	Enoyl-CoA	hydratase/isomerase
ECH_2	PF16113.5	gi|408404802|ref|YP_006862785.1|	-	1e-39	137.0	1.2	2.3e-37	129.3	0.4	2.0	1	1	1	2	2	2	2	Enoyl-CoA	hydratase/isomerase
Peptidase_S49	PF01343.18	gi|408404802|ref|YP_006862785.1|	-	0.017	15.1	0.0	0.12	12.3	0.0	2.1	2	0	0	2	2	2	0	Peptidase	family	S49
Arginase	PF00491.21	gi|408404803|ref|YP_006862786.1|	-	3.8e-57	193.9	0.0	4.3e-57	193.7	0.0	1.0	1	0	0	1	1	1	1	Arginase	family
UPF0489	PF12640.7	gi|408404803|ref|YP_006862786.1|	-	0.093	12.9	0.0	0.16	12.2	0.0	1.5	1	0	0	1	1	1	0	UPF0489	domain
Response_reg	PF00072.24	gi|408404804|ref|YP_006862787.1|	-	1.5e-10	41.2	0.4	1.8e-10	41.0	0.4	1.1	1	0	0	1	1	1	1	Response	regulator	receiver	domain
B12-binding	PF02310.19	gi|408404804|ref|YP_006862787.1|	-	0.075	13.1	0.0	0.11	12.6	0.0	1.2	1	0	0	1	1	1	0	B12	binding	domain
HATPase_c	PF02518.26	gi|408404805|ref|YP_006862788.1|	-	8.5e-26	90.7	0.1	1.9e-25	89.6	0.1	1.6	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
dCache_1	PF02743.18	gi|408404805|ref|YP_006862788.1|	-	1.9e-20	73.7	4.9	3.5e-20	72.8	4.9	1.4	1	0	0	1	1	1	1	Cache	domain
HisKA	PF00512.25	gi|408404805|ref|YP_006862788.1|	-	6.6e-14	51.7	2.2	1.4e-13	50.6	0.6	2.5	2	0	0	2	2	2	1	His	Kinase	A	(phospho-acceptor)	domain
sCache_3_3	PF17202.4	gi|408404805|ref|YP_006862788.1|	-	1.2e-05	25.6	0.5	0.11	12.9	0.1	2.5	2	0	0	2	2	2	2	Single	cache	domain	3
HATPase_c_5	PF14501.6	gi|408404805|ref|YP_006862788.1|	-	8.3e-05	22.4	0.0	0.00018	21.3	0.0	1.6	1	0	0	1	1	1	1	GHKL	domain
HATPase_c_2	PF13581.6	gi|408404805|ref|YP_006862788.1|	-	0.0044	17.0	0.0	0.0094	15.9	0.0	1.5	1	0	0	1	1	1	1	Histidine	kinase-like	ATPase	domain
HALZ	PF02183.18	gi|408404805|ref|YP_006862788.1|	-	0.0059	16.8	0.4	0.014	15.6	0.4	1.6	1	0	0	1	1	1	1	Homeobox	associated	leucine	zipper
HATPase_c_3	PF13589.6	gi|408404805|ref|YP_006862788.1|	-	0.0081	16.0	0.0	0.023	14.5	0.0	1.7	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
Cache_3-Cache_2	PF17201.4	gi|408404805|ref|YP_006862788.1|	-	0.045	13.0	0.5	4.6	6.4	0.0	3.2	3	0	0	3	3	3	0	Cache	3/Cache	2	fusion	domain
sCache_3_2	PF17203.4	gi|408404805|ref|YP_006862788.1|	-	0.05	13.7	0.0	3	8.0	0.0	3.2	4	0	0	4	4	4	0	Single	cache	domain	3
AOC_like	PF18678.1	gi|408404805|ref|YP_006862788.1|	-	0.13	11.9	0.1	1.4	8.5	0.1	2.4	1	1	1	2	2	2	0	Allene	oxide	cyclase	barrel	like	domain
Prefoldin_3	PF13758.6	gi|408404805|ref|YP_006862788.1|	-	0.21	11.7	0.9	0.57	10.3	0.1	2.0	2	0	0	2	2	2	0	Prefoldin	subunit
FtsL	PF04999.13	gi|408404805|ref|YP_006862788.1|	-	0.72	9.9	2.6	1	9.4	0.6	2.1	2	0	0	2	2	2	0	Cell	division	protein	FtsL
GvpG	PF05120.12	gi|408404806|ref|YP_006862789.1|	-	5.6e-07	29.5	0.6	7.1e-07	29.2	0.6	1.1	1	0	0	1	1	1	1	Gas	vesicle	protein	G
Nup54	PF13874.6	gi|408404806|ref|YP_006862789.1|	-	0.00045	20.4	1.1	0.00053	20.1	1.1	1.1	1	0	0	1	1	1	1	Nucleoporin	complex	subunit	54
CdvA	PF18822.1	gi|408404806|ref|YP_006862789.1|	-	0.00059	19.7	1.4	0.00078	19.3	1.4	1.1	1	0	0	1	1	1	1	CdvA-like	coiled-coil	domain
Prok-TraM	PF09228.10	gi|408404806|ref|YP_006862789.1|	-	0.1	13.0	1.0	0.14	12.5	1.0	1.3	1	1	0	1	1	1	0	Prokaryotic	Transcriptional	repressor	TraM
GvpL_GvpF	PF06386.11	gi|408404807|ref|YP_006862790.1|	-	4.3e-62	210.2	0.0	4.8e-62	210.1	0.0	1.0	1	0	0	1	1	1	1	Gas	vesicle	synthesis	protein	GvpL/GvpF
L31	PF09784.9	gi|408404807|ref|YP_006862790.1|	-	0.022	15.2	0.6	0.049	14.1	0.2	1.7	1	1	0	1	1	1	0	Mitochondrial	ribosomal	protein	L31
phage_tail_N	PF08400.10	gi|408404807|ref|YP_006862790.1|	-	0.084	12.9	0.1	0.19	11.7	0.1	1.6	1	0	0	1	1	1	0	Prophage	tail	fibre	N-terminal
DUF2203	PF09969.9	gi|408404807|ref|YP_006862790.1|	-	0.39	11.5	4.1	4	8.2	0.3	2.2	1	1	1	2	2	2	0	Uncharacterized	conserved	protein	(DUF2203)
DUF2703	PF10865.8	gi|408404807|ref|YP_006862790.1|	-	0.81	9.9	4.0	4.1	7.6	0.4	2.6	2	1	0	2	2	2	0	Domain	of	unknown	function	(DUF2703)
GvpK	PF05121.12	gi|408404808|ref|YP_006862791.1|	-	3.7e-22	78.2	1.0	3.7e-22	78.2	1.0	1.8	2	1	1	3	3	3	1	Gas	vesicle	protein	K
Gas_vesicle	PF00741.18	gi|408404808|ref|YP_006862791.1|	-	1.2e-09	38.2	8.6	1.2e-09	38.2	8.6	1.6	2	0	0	2	2	2	1	Gas	vesicle	protein
DnaB_C	PF03796.15	gi|408404808|ref|YP_006862791.1|	-	0.014	14.7	0.3	0.017	14.4	0.3	1.1	1	0	0	1	1	1	0	DnaB-like	helicase	C	terminal	domain
ACP_syn_III_C	PF08541.10	gi|408404808|ref|YP_006862791.1|	-	0.067	13.4	0.0	0.11	12.7	0.0	1.3	1	0	0	1	1	1	0	3-Oxoacyl-[acyl-carrier-protein	(ACP)]	synthase	III	C	terminal
Gas_vesicle	PF00741.18	gi|408404809|ref|YP_006862792.1|	-	2e-17	63.0	4.9	2.6e-17	62.7	4.9	1.2	1	0	0	1	1	1	1	Gas	vesicle	protein
Gas_vesicle	PF00741.18	gi|408404811|ref|YP_006862794.1|	-	6.5e-14	51.8	8.1	8.8e-14	51.4	8.1	1.2	1	0	0	1	1	1	1	Gas	vesicle	protein
ParA	PF10609.9	gi|408404812|ref|YP_006862795.1|	-	4.8e-18	65.5	0.4	6.5e-17	61.8	0.4	2.7	1	1	0	1	1	1	1	NUBPL	iron-transfer	P-loop	NTPase
CbiA	PF01656.23	gi|408404812|ref|YP_006862795.1|	-	1.8e-16	60.3	0.0	3.1e-16	59.6	0.0	1.4	1	1	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
AAA_31	PF13614.6	gi|408404812|ref|YP_006862795.1|	-	2.1e-14	53.8	0.1	2.9e-14	53.4	0.1	1.1	1	0	0	1	1	1	1	AAA	domain
MipZ	PF09140.11	gi|408404812|ref|YP_006862795.1|	-	2.3e-07	30.3	0.1	9.4e-07	28.4	0.1	1.9	1	1	0	1	1	1	1	ATPase	MipZ
CBP_BcsQ	PF06564.12	gi|408404812|ref|YP_006862795.1|	-	9.2e-05	22.0	0.0	0.00016	21.2	0.0	1.3	1	1	0	1	1	1	1	Cellulose	biosynthesis	protein	BcsQ
AAA_25	PF13481.6	gi|408404812|ref|YP_006862795.1|	-	0.0013	18.3	0.0	0.0025	17.4	0.0	1.5	1	0	0	1	1	1	1	AAA	domain
VirC1	PF07015.11	gi|408404812|ref|YP_006862795.1|	-	0.0021	17.4	0.1	0.0061	15.9	0.0	1.8	2	0	0	2	2	2	1	VirC1	protein
ArsA_ATPase	PF02374.15	gi|408404812|ref|YP_006862795.1|	-	0.0028	16.9	0.2	0.0037	16.5	0.2	1.5	1	1	0	1	1	1	1	Anion-transporting	ATPase
MeaB	PF03308.16	gi|408404812|ref|YP_006862795.1|	-	0.0038	16.3	0.2	0.028	13.4	0.1	2.0	2	0	0	2	2	2	1	Methylmalonyl	Co-A	mutase-associated	GTPase	MeaB
Fer4_NifH	PF00142.18	gi|408404812|ref|YP_006862795.1|	-	0.009	15.5	0.0	0.024	14.1	0.0	1.7	2	0	0	2	2	2	1	4Fe-4S	iron	sulfur	cluster	binding	proteins,	NifH/frxC	family
CLP1_P	PF16575.5	gi|408404812|ref|YP_006862795.1|	-	0.019	14.8	0.0	0.035	13.9	0.0	1.4	1	0	0	1	1	1	0	mRNA	cleavage	and	polyadenylation	factor	CLP1	P-loop
HATPase_c	PF02518.26	gi|408404813|ref|YP_006862796.1|	-	2.9e-23	82.5	0.3	7.2e-23	81.2	0.3	1.7	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HisKA	PF00512.25	gi|408404813|ref|YP_006862796.1|	-	1.8e-12	47.1	0.5	1.8e-12	47.1	0.5	3.1	2	1	0	2	2	2	1	His	Kinase	A	(phospho-acceptor)	domain
HATPase_c_2	PF13581.6	gi|408404813|ref|YP_006862796.1|	-	0.00021	21.3	0.0	0.00048	20.1	0.0	1.5	1	0	0	1	1	1	1	Histidine	kinase-like	ATPase	domain
Regulator_TrmB	PF11495.8	gi|408404813|ref|YP_006862796.1|	-	0.00023	20.4	0.3	0.00099	18.4	0.0	2.1	2	0	0	2	2	2	1	Archaeal	transcriptional	regulator	TrmB
HATPase_c_5	PF14501.6	gi|408404813|ref|YP_006862796.1|	-	0.00029	20.7	0.1	0.0009	19.1	0.1	1.8	1	0	0	1	1	1	1	GHKL	domain
PLDc_2	PF13091.6	gi|408404813|ref|YP_006862796.1|	-	0.032	14.1	0.0	0.075	12.9	0.0	1.7	1	0	0	1	1	1	0	PLD-like	domain
Arm-DNA-bind_3	PF13356.6	gi|408404813|ref|YP_006862796.1|	-	0.052	13.9	0.0	0.15	12.5	0.0	1.8	1	0	0	1	1	1	0	Arm	DNA-binding	domain
HATPase_c_3	PF13589.6	gi|408404813|ref|YP_006862796.1|	-	0.053	13.4	0.3	0.17	11.7	0.1	2.0	2	0	0	2	2	2	0	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
YnfE	PF17452.2	gi|408404813|ref|YP_006862796.1|	-	0.1	12.9	0.3	0.1	12.9	0.3	2.0	2	0	0	2	2	2	0	Uncharacterized	YnfE-like
BAR_2	PF10455.9	gi|408404813|ref|YP_006862796.1|	-	0.22	10.6	6.1	0.72	8.9	1.0	2.2	2	0	0	2	2	2	0	Bin/amphiphysin/Rvs	domain	for	vesicular	trafficking
FAF	PF11250.8	gi|408404813|ref|YP_006862796.1|	-	0.3	11.3	2.2	67	3.8	0.0	3.5	3	0	0	3	3	3	0	Fantastic	Four	meristem	regulator
Phage_Mu_Gam	PF07352.12	gi|408404813|ref|YP_006862796.1|	-	0.49	10.3	5.9	0.73	9.7	3.0	2.4	2	0	0	2	2	2	0	Bacteriophage	Mu	Gam	like	protein
Exonuc_VII_L	PF02601.15	gi|408404813|ref|YP_006862796.1|	-	0.68	9.4	7.5	1.1	8.8	2.8	2.2	2	0	0	2	2	2	0	Exonuclease	VII,	large	subunit
UPF0242	PF06785.11	gi|408404813|ref|YP_006862796.1|	-	1.8	8.7	13.1	0.46	10.6	4.3	2.5	2	1	0	2	2	2	0	Uncharacterised	protein	family	(UPF0242)	N-terminus
DUF4355	PF14265.6	gi|408404813|ref|YP_006862796.1|	-	3.6	7.8	8.6	5	7.4	4.2	2.7	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4355)
M16C_assoc	PF08367.11	gi|408404813|ref|YP_006862796.1|	-	5.3	6.1	11.5	0.99	8.5	2.9	3.1	3	1	1	4	4	4	0	Peptidase	M16C	associated
NleF_casp_inhib	PF16809.5	gi|408404813|ref|YP_006862796.1|	-	7.5	6.5	8.2	0.47	10.4	2.1	2.3	3	0	0	3	3	3	0	NleF	caspase	inhibitor
BD_b_sandwich	PF18820.1	gi|408404815|ref|YP_006862798.1|	-	0.031	14.3	0.1	0.034	14.1	0.1	1.1	1	0	0	1	1	1	0	Bdellovibrio	Beta-sandwich
HMA	PF00403.26	gi|408404816|ref|YP_006862799.1|	-	5.8e-13	49.1	0.1	6.5e-13	48.9	0.1	1.0	1	0	0	1	1	1	1	Heavy-metal-associated	domain
ChlI	PF13541.6	gi|408404816|ref|YP_006862799.1|	-	0.056	13.3	0.0	0.12	12.3	0.0	1.5	1	1	1	2	2	2	0	Subunit	ChlI	of	Mg-chelatase
E1-E2_ATPase	PF00122.20	gi|408404817|ref|YP_006862800.1|	-	7.7e-56	188.5	1.3	7.7e-56	188.5	1.3	2.3	3	0	0	3	3	3	1	E1-E2	ATPase
Hydrolase	PF00702.26	gi|408404817|ref|YP_006862800.1|	-	6.5e-53	180.1	5.2	6.5e-53	180.1	5.2	1.9	2	0	0	2	2	2	1	haloacid	dehalogenase-like	hydrolase
YHS	PF04945.13	gi|408404817|ref|YP_006862800.1|	-	2.4e-09	37.1	0.3	4.4e-09	36.3	0.3	1.4	1	0	0	1	1	1	1	YHS	domain
Hydrolase_3	PF08282.12	gi|408404817|ref|YP_006862800.1|	-	1.4e-07	31.5	1.5	0.0022	17.8	0.2	2.3	1	1	0	2	2	2	2	haloacid	dehalogenase-like	hydrolase
HAD	PF12710.7	gi|408404817|ref|YP_006862800.1|	-	3.3e-05	24.4	0.0	0.00012	22.5	0.0	2.0	1	1	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Hydrolase_6	PF13344.6	gi|408404817|ref|YP_006862800.1|	-	0.00031	20.8	0.1	0.0012	18.9	0.0	2.1	2	0	0	2	2	2	1	Haloacid	dehalogenase-like	hydrolase
ADH_zinc_N	PF00107.26	gi|408404817|ref|YP_006862800.1|	-	0.015	15.3	3.3	0.036	14.1	0.5	2.5	2	0	0	2	2	2	0	Zinc-binding	dehydrogenase
DUF2116	PF09889.9	gi|408404817|ref|YP_006862800.1|	-	0.015	15.3	0.2	0.074	13.1	0.0	2.2	2	0	0	2	2	2	0	Uncharacterized	protein	containing	a	Zn-ribbon	(DUF2116)
GARS_C	PF02843.16	gi|408404817|ref|YP_006862800.1|	-	0.02	15.1	1.5	0.38	11.1	0.2	2.6	1	1	0	2	2	2	0	Phosphoribosylglycinamide	synthetase,	C	domain
HAD_2	PF13419.6	gi|408404817|ref|YP_006862800.1|	-	0.051	13.7	0.3	0.14	12.2	0.3	1.7	1	1	0	1	1	1	0	Haloacid	dehalogenase-like	hydrolase
NosL	PF05573.12	gi|408404817|ref|YP_006862800.1|	-	0.1	13.0	0.1	0.22	11.9	0.1	1.6	1	0	0	1	1	1	0	NosL
zf-FCS	PF06467.14	gi|408404817|ref|YP_006862800.1|	-	0.11	12.5	0.5	0.19	11.7	0.5	1.4	1	0	0	1	1	1	0	MYM-type	Zinc	finger	with	FCS	sequence	motif
DUF1887	PF09002.11	gi|408404819|ref|YP_006862802.1|	-	0.042	12.5	0.0	0.062	12.0	0.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1887)
Calici_MSP	PF05752.11	gi|408404820|ref|YP_006862803.1|	-	0.055	13.3	0.0	0.059	13.2	0.0	1.1	1	0	0	1	1	1	0	Calicivirus	minor	structural	protein
Pyr_redox_dim	PF02852.22	gi|408404821|ref|YP_006862804.1|	-	2.2e-10	40.8	0.2	2.2e-10	40.7	0.2	1.0	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase,	dimerisation	domain
CODH_A_N	PF18537.1	gi|408404821|ref|YP_006862804.1|	-	0.097	12.7	0.0	0.11	12.5	0.0	1.0	1	0	0	1	1	1	0	Carbon	monoxide	dehydrogenase	subunit	alpha	N-terminal	domain
Pyr_redox_2	PF07992.14	gi|408404822|ref|YP_006862805.1|	-	6.1e-07	29.0	0.1	7e-07	28.8	0.1	1.1	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_2	PF07992.14	gi|408404823|ref|YP_006862806.1|	-	8.8e-18	64.5	0.0	1e-17	64.4	0.0	1.0	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox	PF00070.27	gi|408404823|ref|YP_006862806.1|	-	1.9e-12	47.6	0.0	5.3e-12	46.1	0.0	1.6	1	1	1	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_3	PF13738.6	gi|408404823|ref|YP_006862806.1|	-	8.8e-07	28.5	0.0	1e-06	28.3	0.0	1.1	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
3HCDH_N	PF02737.18	gi|408404823|ref|YP_006862806.1|	-	0.018	14.9	0.0	0.022	14.6	0.0	1.3	1	1	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
NAD_binding_8	PF13450.6	gi|408404823|ref|YP_006862806.1|	-	0.036	14.3	0.1	1	9.6	0.0	2.2	2	0	0	2	2	2	0	NAD(P)-binding	Rossmann-like	domain
HI0933_like	PF03486.14	gi|408404823|ref|YP_006862806.1|	-	0.053	12.2	0.2	4.5	5.9	0.0	2.0	1	1	1	2	2	2	0	HI0933-like	protein
Alpha-mann_mid	PF09261.11	gi|408404823|ref|YP_006862806.1|	-	0.14	12.3	0.0	0.18	12.0	0.0	1.2	1	0	0	1	1	1	0	Alpha	mannosidase	middle	domain
Pyr_redox_2	PF07992.14	gi|408404824|ref|YP_006862807.1|	-	9.2e-22	77.6	0.0	1.1e-21	77.4	0.0	1.0	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
GIDA	PF01134.22	gi|408404824|ref|YP_006862807.1|	-	3.5e-12	46.1	0.4	9.1e-12	44.7	0.4	1.6	1	1	0	1	1	1	1	Glucose	inhibited	division	protein	A
HI0933_like	PF03486.14	gi|408404824|ref|YP_006862807.1|	-	1.6e-05	23.8	0.6	0.0026	16.5	0.5	2.1	2	0	0	2	2	2	2	HI0933-like	protein
FAD_binding_2	PF00890.24	gi|408404824|ref|YP_006862807.1|	-	0.00016	20.9	1.3	0.00026	20.2	1.3	1.3	1	0	0	1	1	1	1	FAD	binding	domain
Pyr_redox_3	PF13738.6	gi|408404824|ref|YP_006862807.1|	-	0.00017	21.0	0.2	0.0018	17.6	0.2	2.2	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_oxidored	PF12831.7	gi|408404824|ref|YP_006862807.1|	-	0.00051	19.5	0.8	0.0007	19.1	0.8	1.1	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
K_oxygenase	PF13434.6	gi|408404824|ref|YP_006862807.1|	-	0.0027	16.9	0.1	1.7	7.7	0.0	2.2	2	0	0	2	2	2	2	L-lysine	6-monooxygenase	(NADPH-requiring)
Thi4	PF01946.17	gi|408404824|ref|YP_006862807.1|	-	0.081	12.1	0.7	0.13	11.5	0.1	1.6	2	0	0	2	2	2	0	Thi4	family
Trp_halogenase	PF04820.14	gi|408404824|ref|YP_006862807.1|	-	0.1	11.4	0.3	0.26	10.1	0.3	1.6	2	0	0	2	2	2	0	Tryptophan	halogenase
NAD_binding_8	PF13450.6	gi|408404824|ref|YP_006862807.1|	-	0.18	12.0	0.3	0.37	11.1	0.3	1.5	1	0	0	1	1	1	0	NAD(P)-binding	Rossmann-like	domain
Methyltransf_3	PF01596.17	gi|408404825|ref|YP_006862808.1|	-	1.6e-32	112.5	0.4	2.3e-32	111.9	0.4	1.3	1	1	0	1	1	1	1	O-methyltransferase
Methyltransf_24	PF13578.6	gi|408404825|ref|YP_006862808.1|	-	2.7e-13	50.9	0.0	4.2e-13	50.2	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.6	gi|408404825|ref|YP_006862808.1|	-	5e-09	36.1	0.0	6.5e-09	35.8	0.0	1.1	1	0	0	1	1	1	1	Methyltransferase	domain
PCMT	PF01135.19	gi|408404825|ref|YP_006862808.1|	-	3e-08	33.7	0.0	4.3e-08	33.2	0.0	1.3	1	0	0	1	1	1	1	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
Methyltransf_25	PF13649.6	gi|408404825|ref|YP_006862808.1|	-	1.7e-05	25.5	0.0	3.1e-05	24.6	0.0	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
GCD14	PF08704.10	gi|408404825|ref|YP_006862808.1|	-	0.0003	20.6	0.0	0.0004	20.1	0.0	1.1	1	0	0	1	1	1	1	tRNA	methyltransferase	complex	GCD14	subunit
CmcI	PF04989.12	gi|408404825|ref|YP_006862808.1|	-	0.0038	17.0	0.0	0.0048	16.6	0.0	1.2	1	0	0	1	1	1	1	Cephalosporin	hydroxylase
Methyltr_RsmB-F	PF01189.17	gi|408404825|ref|YP_006862808.1|	-	0.009	15.7	0.0	0.013	15.1	0.0	1.2	1	0	0	1	1	1	1	16S	rRNA	methyltransferase	RsmB/F
Methyltransf_11	PF08241.12	gi|408404825|ref|YP_006862808.1|	-	0.014	16.0	0.0	0.028	15.1	0.0	1.5	1	0	0	1	1	1	0	Methyltransferase	domain
TRM	PF02005.16	gi|408404825|ref|YP_006862808.1|	-	0.027	13.6	0.0	0.03	13.5	0.0	1.1	1	0	0	1	1	1	0	N2,N2-dimethylguanosine	tRNA	methyltransferase
PrmA	PF06325.13	gi|408404825|ref|YP_006862808.1|	-	0.036	13.5	0.0	0.059	12.7	0.0	1.3	1	1	0	1	1	1	0	Ribosomal	protein	L11	methyltransferase	(PrmA)
Methyltransf_18	PF12847.7	gi|408404825|ref|YP_006862808.1|	-	0.054	13.4	0.0	0.12	12.3	0.0	1.7	2	0	0	2	2	2	0	Methyltransferase	domain
UPF0020	PF01170.18	gi|408404825|ref|YP_006862808.1|	-	0.066	12.9	0.0	0.088	12.5	0.0	1.3	1	0	0	1	1	1	0	Putative	RNA	methylase	family	UPF0020
Ubie_methyltran	PF01209.18	gi|408404825|ref|YP_006862808.1|	-	0.08	12.3	0.1	0.12	11.7	0.1	1.3	1	0	0	1	1	1	0	ubiE/COQ5	methyltransferase	family
Cons_hypoth95	PF03602.15	gi|408404825|ref|YP_006862808.1|	-	0.092	12.4	0.0	0.12	12.0	0.0	1.2	1	0	0	1	1	1	0	Conserved	hypothetical	protein	95
Methyltransf_15	PF09445.10	gi|408404825|ref|YP_006862808.1|	-	0.12	12.0	0.0	0.14	11.7	0.0	1.2	1	0	0	1	1	1	0	RNA	cap	guanine-N2	methyltransferase
Methyltransf_23	PF13489.6	gi|408404825|ref|YP_006862808.1|	-	0.12	12.2	0.0	0.15	11.9	0.0	1.3	1	0	0	1	1	1	0	Methyltransferase	domain
PAC2	PF09754.9	gi|408404827|ref|YP_006862810.1|	-	2.3e-26	93.1	0.0	2.6e-26	93.0	0.0	1.0	1	0	0	1	1	1	1	PAC2	family
DNA_ligase_A_M	PF01068.21	gi|408404830|ref|YP_006862813.1|	-	7e-58	195.6	2.6	1.1e-57	195.0	2.6	1.3	1	0	0	1	1	1	1	ATP	dependent	DNA	ligase	domain
DNA_ligase_A_N	PF04675.14	gi|408404830|ref|YP_006862813.1|	-	4e-39	134.7	0.6	2.6e-38	132.1	0.0	2.5	3	0	0	3	3	3	1	DNA	ligase	N	terminus
DNA_ligase_A_C	PF04679.15	gi|408404830|ref|YP_006862813.1|	-	2.6e-22	79.3	0.0	9.5e-22	77.5	0.0	2.0	2	0	0	2	2	2	1	ATP	dependent	DNA	ligase	C	terminal	region
RNA_ligase	PF09414.10	gi|408404830|ref|YP_006862813.1|	-	5.5e-09	36.5	0.6	9.3e-09	35.8	0.6	1.4	1	0	0	1	1	1	1	RNA	ligase
DNA_ligase_OB_2	PF14743.6	gi|408404830|ref|YP_006862813.1|	-	0.092	12.8	0.2	0.33	11.0	0.0	2.0	2	0	0	2	2	2	0	DNA	ligase	OB-like	domain
Ribosomal_S25	PF03297.15	gi|408404831|ref|YP_006862814.1|	-	3.3e-10	40.1	0.5	4.7e-10	39.6	0.5	1.3	1	0	0	1	1	1	1	S25	ribosomal	protein
HTH_24	PF13412.6	gi|408404831|ref|YP_006862814.1|	-	0.00058	19.4	0.1	0.00074	19.0	0.1	1.2	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
MarR	PF01047.22	gi|408404831|ref|YP_006862814.1|	-	0.00074	19.4	0.1	0.0011	18.8	0.1	1.3	1	0	0	1	1	1	1	MarR	family
TrmB	PF01978.19	gi|408404831|ref|YP_006862814.1|	-	0.016	15.1	0.0	0.024	14.5	0.0	1.3	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
Rrf2	PF02082.20	gi|408404831|ref|YP_006862814.1|	-	0.019	15.3	0.3	0.027	14.8	0.3	1.3	1	0	0	1	1	1	0	Transcriptional	regulator
HTH_Crp_2	PF13545.6	gi|408404831|ref|YP_006862814.1|	-	0.056	13.4	0.0	0.07	13.1	0.0	1.2	1	0	0	1	1	1	0	Crp-like	helix-turn-helix	domain
Cyclophil_like2	PF18050.1	gi|408404832|ref|YP_006862815.1|	-	4.6e-08	33.0	0.0	5.9e-08	32.7	0.0	1.3	1	0	0	1	1	1	1	Cyclophilin-like	family
Cyclophil_like	PF04126.13	gi|408404832|ref|YP_006862815.1|	-	9.5e-08	31.9	0.0	1.2e-07	31.5	0.0	1.1	1	0	0	1	1	1	1	Cyclophilin-like
DUF3830	PF12903.7	gi|408404832|ref|YP_006862815.1|	-	0.0017	18.0	0.0	0.0022	17.7	0.0	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3830)
Cupin_3	PF05899.12	gi|408404832|ref|YP_006862815.1|	-	0.1	12.3	0.1	0.7	9.6	0.0	2.1	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF861)
RNA_pol_Rpb6	PF01192.22	gi|408404833|ref|YP_006862816.1|	-	5.5e-08	32.6	0.0	9.4e-08	31.9	0.0	1.4	1	0	0	1	1	1	1	RNA	polymerase	Rpb6
Med3	PF11593.8	gi|408404833|ref|YP_006862816.1|	-	0.1	11.8	1.6	0.084	12.1	1.6	1.1	1	0	0	1	1	1	0	Mediator	complex	subunit	3	fungal
HTH_20	PF12840.7	gi|408404834|ref|YP_006862817.1|	-	5.8e-07	29.5	0.0	1e-06	28.7	0.0	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
MarR_2	PF12802.7	gi|408404834|ref|YP_006862817.1|	-	6.9e-06	25.9	0.1	2.4e-05	24.1	0.0	2.0	2	0	0	2	2	2	1	MarR	family
DUF4423	PF14394.6	gi|408404834|ref|YP_006862817.1|	-	2.2e-05	24.2	0.0	4.5e-05	23.2	0.0	1.5	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4423)
HTH_5	PF01022.20	gi|408404834|ref|YP_006862817.1|	-	6.6e-05	22.7	0.1	0.00015	21.5	0.1	1.7	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_45	PF14947.6	gi|408404834|ref|YP_006862817.1|	-	0.00016	21.6	0.1	0.00051	20.0	0.1	1.9	1	0	0	1	1	1	1	Winged	helix-turn-helix
TrmB	PF01978.19	gi|408404834|ref|YP_006862817.1|	-	0.0003	20.6	0.0	0.0031	17.4	0.0	2.4	2	0	0	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_24	PF13412.6	gi|408404834|ref|YP_006862817.1|	-	0.00033	20.1	0.1	0.00071	19.1	0.1	1.6	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_11	PF08279.12	gi|408404834|ref|YP_006862817.1|	-	0.0014	18.5	0.0	0.0032	17.4	0.0	1.6	1	0	0	1	1	1	1	HTH	domain
HTH_27	PF13463.6	gi|408404834|ref|YP_006862817.1|	-	0.0041	17.6	0.0	0.011	16.2	0.0	1.7	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
HTH_Crp_2	PF13545.6	gi|408404834|ref|YP_006862817.1|	-	0.0067	16.4	0.1	0.017	15.1	0.1	1.7	1	0	0	1	1	1	1	Crp-like	helix-turn-helix	domain
MarR	PF01047.22	gi|408404834|ref|YP_006862817.1|	-	0.016	15.1	0.7	0.045	13.7	0.1	2.0	2	0	0	2	2	2	0	MarR	family
Mrr_N	PF14338.6	gi|408404834|ref|YP_006862817.1|	-	0.02	15.0	0.1	0.063	13.4	0.0	1.9	2	0	0	2	2	2	0	Mrr	N-terminal	domain
HTH_IclR	PF09339.10	gi|408404834|ref|YP_006862817.1|	-	0.03	14.1	0.0	0.055	13.3	0.0	1.4	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
DUF2250	PF10007.9	gi|408404834|ref|YP_006862817.1|	-	0.04	14.0	0.2	0.1	12.7	0.0	1.7	2	0	0	2	2	2	0	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
HTH_29	PF13551.6	gi|408404834|ref|YP_006862817.1|	-	0.1	12.6	0.0	0.19	11.8	0.0	1.4	1	0	0	1	1	1	0	Winged	helix-turn	helix
Fe_dep_repress	PF01325.19	gi|408404834|ref|YP_006862817.1|	-	0.12	12.6	0.2	0.33	11.2	0.0	1.8	2	0	0	2	2	1	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
LZ_Tnp_IS481	PF13011.6	gi|408404834|ref|YP_006862817.1|	-	0.12	12.9	0.0	0.25	11.9	0.0	1.4	1	0	0	1	1	1	0	leucine-zipper	of	insertion	element	IS481
HTH_AsnC-type	PF13404.6	gi|408404834|ref|YP_006862817.1|	-	0.14	12.0	0.0	0.29	11.0	0.0	1.5	1	0	0	1	1	1	0	AsnC-type	helix-turn-helix	domain
HemN_C	PF06969.16	gi|408404834|ref|YP_006862817.1|	-	0.15	12.2	0.0	0.3	11.2	0.0	1.5	1	0	0	1	1	1	0	HemN	C-terminal	domain
B-block_TFIIIC	PF04182.12	gi|408404834|ref|YP_006862817.1|	-	0.17	12.0	0.2	0.96	9.7	0.0	2.2	2	0	0	2	2	2	0	B-block	binding	subunit	of	TFIIIC
Phage_holin_3_6	PF07332.11	gi|408404835|ref|YP_006862818.1|	-	0.0058	16.7	1.2	0.0067	16.4	1.2	1.1	1	0	0	1	1	1	1	Putative	Actinobacterial	Holin-X,	holin	superfamily	III
DUF4131	PF13567.6	gi|408404835|ref|YP_006862818.1|	-	0.12	12.1	0.4	0.15	11.7	0.4	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4131)
DUF2207	PF09972.9	gi|408404835|ref|YP_006862818.1|	-	0.14	10.9	1.0	0.14	10.9	1.0	1.0	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2207)
TMEM51	PF15345.6	gi|408404835|ref|YP_006862818.1|	-	0.15	11.9	0.0	0.22	11.3	0.0	1.2	1	0	0	1	1	1	0	Transmembrane	protein	51
DUF4175	PF13779.6	gi|408404835|ref|YP_006862818.1|	-	0.4	8.5	0.3	0.43	8.4	0.3	1.0	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4175)
DUF202	PF02656.15	gi|408404835|ref|YP_006862818.1|	-	1.4	9.4	6.9	2.3	8.7	7.0	1.3	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF202)
DUF3040	PF11239.8	gi|408404835|ref|YP_006862818.1|	-	3.9	7.8	6.5	14	6.1	6.6	1.7	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF3040)
HTH_3	PF01381.22	gi|408404836|ref|YP_006862819.1|	-	4.4e-06	26.7	0.2	1.1e-05	25.4	0.2	1.6	2	0	0	2	2	2	1	Helix-turn-helix
HTH_37	PF13744.6	gi|408404836|ref|YP_006862819.1|	-	0.0011	18.8	0.1	0.0027	17.6	0.1	1.7	1	1	1	2	2	2	1	Helix-turn-helix	domain
YdaS_antitoxin	PF15943.5	gi|408404836|ref|YP_006862819.1|	-	0.0027	17.5	0.0	0.0048	16.7	0.0	1.5	1	0	0	1	1	1	1	Putative	antitoxin	of	bacterial	toxin-antitoxin	system,	YdaS/YdaT
HTH_19	PF12844.7	gi|408404836|ref|YP_006862819.1|	-	0.0052	16.8	0.1	0.044	13.8	0.1	2.0	1	1	1	2	2	2	1	Helix-turn-helix	domain
P22_Cro	PF14549.6	gi|408404836|ref|YP_006862819.1|	-	0.015	15.1	0.0	0.031	14.1	0.0	1.6	1	0	0	1	1	1	0	DNA-binding	transcriptional	regulator	Cro
HTH_17	PF12728.7	gi|408404836|ref|YP_006862819.1|	-	0.063	13.5	0.0	0.24	11.6	0.0	2.0	2	1	0	2	2	2	0	Helix-turn-helix	domain
Vitellogenin_N	PF01347.22	gi|408404836|ref|YP_006862819.1|	-	0.075	11.4	0.0	0.23	9.8	0.0	1.4	1	1	0	2	2	2	0	Lipoprotein	amino	terminal	region
ADH_N	PF08240.12	gi|408404837|ref|YP_006862820.1|	-	4e-24	84.6	2.5	8.9e-24	83.5	2.5	1.6	1	0	0	1	1	1	1	Alcohol	dehydrogenase	GroES-like	domain
ADH_zinc_N	PF00107.26	gi|408404837|ref|YP_006862820.1|	-	2e-21	76.3	0.0	4.3e-21	75.3	0.0	1.6	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
Glu_dehyd_C	PF16912.5	gi|408404837|ref|YP_006862820.1|	-	1.1e-09	38.1	0.0	1.8e-09	37.4	0.0	1.3	1	0	0	1	1	1	1	Glucose	dehydrogenase	C-terminus
HI0933_like	PF03486.14	gi|408404837|ref|YP_006862820.1|	-	0.0034	16.1	0.1	0.005	15.6	0.1	1.2	1	0	0	1	1	1	1	HI0933-like	protein
AlaDh_PNT_C	PF01262.21	gi|408404837|ref|YP_006862820.1|	-	0.0044	16.3	0.1	0.038	13.3	0.1	2.0	1	1	1	2	2	2	1	Alanine	dehydrogenase/PNT,	C-terminal	domain
ADH_zinc_N_2	PF13602.6	gi|408404837|ref|YP_006862820.1|	-	0.0049	17.9	0.0	0.0084	17.2	0.0	1.4	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
FAD_binding_3	PF01494.19	gi|408404837|ref|YP_006862820.1|	-	0.017	14.3	0.0	0.031	13.5	0.0	1.3	1	0	0	1	1	1	0	FAD	binding	domain
Pyr_redox_3	PF13738.6	gi|408404837|ref|YP_006862820.1|	-	0.063	12.5	0.1	0.14	11.4	0.0	1.6	2	0	0	2	2	2	0	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_2	PF07992.14	gi|408404837|ref|YP_006862820.1|	-	0.091	12.0	1.2	0.31	10.3	1.2	2.1	1	1	0	1	1	1	0	Pyridine	nucleotide-disulphide	oxidoreductase
Laminin_G_3	PF13385.6	gi|408404839|ref|YP_006862822.1|	-	9.1e-30	103.8	2.5	1.3e-29	103.3	2.5	1.2	1	0	0	1	1	1	1	Concanavalin	A-like	lectin/glucanases	superfamily
Laminin_G_2	PF02210.24	gi|408404839|ref|YP_006862822.1|	-	0.00069	20.2	0.0	0.001	19.7	0.0	1.2	1	0	0	1	1	1	1	Laminin	G	domain
Laminin_G_1	PF00054.23	gi|408404839|ref|YP_006862822.1|	-	0.0052	17.0	0.0	0.01	16.0	0.0	1.5	1	1	0	1	1	1	1	Laminin	G	domain
DUF1080	PF06439.11	gi|408404839|ref|YP_006862822.1|	-	0.04	14.0	0.2	0.071	13.2	0.2	1.3	1	0	0	1	1	1	0	Domain	of	Unknown	Function	(DUF1080)
EpuA	PF11772.8	gi|408404839|ref|YP_006862822.1|	-	0.14	11.9	1.0	0.26	11.0	0.0	1.9	2	0	0	2	2	2	0	DNA-directed	RNA	polymerase	subunit	beta
DeoC	PF01791.9	gi|408404841|ref|YP_006862824.1|	-	2.9e-18	66.3	0.0	3.8e-18	66.0	0.0	1.2	1	0	0	1	1	1	1	DeoC/LacD	family	aldolase
SnoaL_3	PF13474.6	gi|408404842|ref|YP_006862825.1|	-	3e-08	33.9	0.0	3.5e-08	33.8	0.0	1.1	1	0	0	1	1	1	1	SnoaL-like	domain
DUF4440	PF14534.6	gi|408404842|ref|YP_006862825.1|	-	3.9e-06	27.2	0.0	4.4e-06	27.0	0.0	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4440)
CaMKII_AD	PF08332.10	gi|408404842|ref|YP_006862825.1|	-	0.0015	18.7	0.2	0.0017	18.5	0.2	1.3	1	1	0	1	1	1	1	Calcium/calmodulin	dependent	protein	kinase	II	association	domain
Putative_PNPOx	PF01243.20	gi|408404843|ref|YP_006862826.1|	-	4.3e-12	46.1	0.0	5.6e-12	45.7	0.0	1.1	1	0	0	1	1	1	1	Pyridoxamine	5'-phosphate	oxidase
TPP_enzyme_N	PF02776.18	gi|408404844|ref|YP_006862827.1|	-	8.9e-60	201.2	0.9	1e-58	197.7	0.2	2.3	2	1	0	2	2	2	1	Thiamine	pyrophosphate	enzyme,	N-terminal	TPP	binding	domain
TPP_enzyme_M	PF00205.22	gi|408404844|ref|YP_006862827.1|	-	1.4e-47	160.8	0.1	3.5e-47	159.6	0.1	1.7	1	0	0	1	1	1	1	Thiamine	pyrophosphate	enzyme,	central	domain
TPP_enzyme_C	PF02775.21	gi|408404844|ref|YP_006862827.1|	-	4.7e-45	153.1	0.7	7e-44	149.3	0.4	2.6	2	1	1	3	3	3	1	Thiamine	pyrophosphate	enzyme,	C-terminal	TPP	binding	domain
ALS_ss_C	PF10369.9	gi|408404845|ref|YP_006862828.1|	-	4.3e-27	94.1	1.4	1.7e-25	89.0	0.1	2.8	2	1	1	3	3	3	1	Small	subunit	of	acetolactate	synthase
ACT_5	PF13710.6	gi|408404845|ref|YP_006862828.1|	-	1.3e-18	66.6	0.7	2.6e-18	65.6	0.7	1.5	1	0	0	1	1	1	1	ACT	domain
ACT	PF01842.25	gi|408404845|ref|YP_006862828.1|	-	3.7e-16	58.6	0.1	8.1e-16	57.5	0.1	1.5	1	0	0	1	1	1	1	ACT	domain
ACT_4	PF13291.6	gi|408404845|ref|YP_006862828.1|	-	2.3e-06	28.1	0.5	4.5e-06	27.2	0.5	1.5	1	0	0	1	1	1	1	ACT	domain
Saccharop_dh_N	PF04455.12	gi|408404845|ref|YP_006862828.1|	-	0.018	15.4	0.3	0.03	14.7	0.2	1.5	1	1	0	1	1	1	0	LOR/SDH	bifunctional	enzyme	conserved	region
Trans_reg_C	PF00486.28	gi|408404845|ref|YP_006862828.1|	-	0.031	14.3	0.3	0.32	11.1	0.3	2.2	1	1	1	2	2	2	0	Transcriptional	regulatory	protein,	C	terminal
NIL	PF09383.10	gi|408404845|ref|YP_006862828.1|	-	0.049	13.5	0.1	2.2	8.2	0.1	2.2	2	0	0	2	2	2	0	NIL	domain
NCD2	PF04905.13	gi|408404845|ref|YP_006862828.1|	-	0.094	12.7	0.1	0.16	11.9	0.1	1.4	1	0	0	1	1	1	0	NAB	conserved	region	2	(NCD2)
ZipA_C	PF04354.13	gi|408404845|ref|YP_006862828.1|	-	0.13	12.1	0.1	0.26	11.1	0.1	1.4	1	0	0	1	1	1	0	ZipA,	C-terminal	FtsZ-binding	domain
HMGL-like	PF00682.19	gi|408404846|ref|YP_006862829.1|	-	4.4e-91	305.1	3.8	4.4e-91	305.1	3.8	1.7	2	0	0	2	2	2	1	HMGL-like
LeuA_dimer	PF08502.10	gi|408404846|ref|YP_006862829.1|	-	2.2e-30	105.3	3.7	6.3e-30	103.8	3.7	1.8	1	0	0	1	1	1	1	LeuA	allosteric	(dimerisation)	domain
UPF0154	PF03672.13	gi|408404846|ref|YP_006862829.1|	-	0.024	14.6	0.6	0.049	13.7	0.0	1.8	2	0	0	2	2	2	0	Uncharacterised	protein	family	(UPF0154)
YfhD	PF14151.6	gi|408404846|ref|YP_006862829.1|	-	0.026	14.7	0.6	7.3	6.8	0.0	2.7	2	0	0	2	2	2	0	YfhD-like	protein
Iso_dh	PF00180.20	gi|408404847|ref|YP_006862830.1|	-	4.8e-97	325.2	0.1	5.5e-97	325.0	0.1	1.0	1	0	0	1	1	1	1	Isocitrate/isopropylmalate	dehydrogenase
PdxA	PF04166.12	gi|408404847|ref|YP_006862830.1|	-	0.0062	16.0	0.0	0.012	15.1	0.0	1.4	1	0	0	1	1	1	1	Pyridoxal	phosphate	biosynthetic	protein	PdxA
HTH_45	PF14947.6	gi|408404848|ref|YP_006862831.1|	-	3.8e-06	26.8	0.1	6.4e-06	26.1	0.1	1.3	1	0	0	1	1	1	1	Winged	helix-turn-helix
HTH_5	PF01022.20	gi|408404848|ref|YP_006862831.1|	-	8.2e-05	22.4	0.5	0.00037	20.3	0.1	2.0	2	0	0	2	2	2	1	Bacterial	regulatory	protein,	arsR	family
HTH_20	PF12840.7	gi|408404848|ref|YP_006862831.1|	-	0.013	15.6	0.1	0.029	14.4	0.1	1.6	1	0	0	1	1	1	0	Helix-turn-helix	domain
DUF4364	PF14277.6	gi|408404848|ref|YP_006862831.1|	-	0.063	13.0	0.1	0.15	11.8	0.0	1.6	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4364)
Ly49	PF08391.10	gi|408404848|ref|YP_006862831.1|	-	0.11	12.8	0.3	0.26	11.6	0.1	1.6	2	0	0	2	2	2	0	Ly49-like	protein,	N-terminal	region
SIMPL	PF04402.14	gi|408404849|ref|YP_006862832.1|	-	1.4e-29	104.0	6.4	1.7e-18	67.8	1.8	2.1	2	0	0	2	2	2	2	Protein	of	unknown	function	(DUF541)
RSN1_TM	PF13967.6	gi|408404850|ref|YP_006862833.1|	-	0.0049	16.6	1.4	0.005	16.6	0.1	1.5	2	0	0	2	2	2	1	Late	exocytosis,	associated	with	Golgi	transport
zf-B_box	PF00643.24	gi|408404850|ref|YP_006862833.1|	-	0.023	14.8	6.2	0.023	14.8	6.2	1.9	2	0	0	2	2	2	0	B-box	zinc	finger
DZR	PF12773.7	gi|408404850|ref|YP_006862833.1|	-	0.9	9.6	12.0	1.1	9.3	1.6	2.2	1	1	1	2	2	2	0	Double	zinc	ribbon
RDD	PF06271.12	gi|408404850|ref|YP_006862833.1|	-	1.2	9.3	5.6	2.6	8.3	5.6	1.4	1	1	0	1	1	1	0	RDD	family
zf-C3HC4	PF00097.25	gi|408404850|ref|YP_006862833.1|	-	2.3	8.2	11.9	3.3	7.7	11.9	1.3	1	0	0	1	1	1	0	Zinc	finger,	C3HC4	type	(RING	finger)
CPSase_sm_chain	PF00988.22	gi|408404851|ref|YP_006862834.1|	-	1.2e-49	167.4	0.0	2e-49	166.7	0.0	1.4	1	0	0	1	1	1	1	Carbamoyl-phosphate	synthase	small	chain,	CPSase	domain
GATase	PF00117.28	gi|408404851|ref|YP_006862834.1|	-	3.2e-46	157.5	0.0	5e-46	156.9	0.0	1.3	1	0	0	1	1	1	1	Glutamine	amidotransferase	class-I
Peptidase_C26	PF07722.13	gi|408404851|ref|YP_006862834.1|	-	9.7e-09	35.3	0.4	8.7e-06	25.6	0.4	2.4	1	1	0	1	1	1	1	Peptidase	C26
DJ-1_PfpI	PF01965.24	gi|408404851|ref|YP_006862834.1|	-	0.11	12.3	0.0	0.25	11.2	0.0	1.7	1	0	0	1	1	1	0	DJ-1/PfpI	family
CPSase_L_D2	PF02786.17	gi|408404852|ref|YP_006862835.1|	-	5e-109	362.7	0.0	2.5e-75	252.6	0.0	2.3	2	0	0	2	2	2	2	Carbamoyl-phosphate	synthase	L	chain,	ATP	binding	domain
CPSase_L_D3	PF02787.19	gi|408404852|ref|YP_006862835.1|	-	4.8e-40	136.7	0.1	1e-39	135.6	0.1	1.6	1	0	0	1	1	1	1	Carbamoyl-phosphate	synthetase	large	chain,	oligomerisation	domain
ATP-grasp	PF02222.22	gi|408404852|ref|YP_006862835.1|	-	2.7e-14	53.1	0.9	1.3e-06	28.1	0.0	2.8	3	0	0	3	3	3	2	ATP-grasp	domain
MGS	PF02142.22	gi|408404852|ref|YP_006862835.1|	-	5e-13	49.1	0.8	2.6e-12	46.8	0.0	2.7	4	0	0	4	4	4	1	MGS-like	domain
Dala_Dala_lig_C	PF07478.13	gi|408404852|ref|YP_006862835.1|	-	1.8e-12	47.3	0.6	1.7e-08	34.2	0.0	2.4	2	0	0	2	2	2	2	D-ala	D-ala	ligase	C-terminus
ATPgrasp_Ter	PF15632.6	gi|408404852|ref|YP_006862835.1|	-	9.2e-10	38.4	0.0	6.6e-06	25.9	0.0	2.6	2	0	0	2	2	2	2	ATP-grasp	in	the	biosynthetic	pathway	with	Ter	operon
GARS_A	PF01071.19	gi|408404852|ref|YP_006862835.1|	-	4.9e-06	26.4	0.1	0.00045	20.1	0.0	2.8	2	0	0	2	2	2	1	Phosphoribosylglycinamide	synthetase,	ATP-grasp	(A)	domain
ATP-grasp_5	PF13549.6	gi|408404852|ref|YP_006862835.1|	-	2.5e-05	23.8	0.0	0.069	12.6	0.0	2.8	3	0	0	3	3	3	2	ATP-grasp	domain
RimK	PF08443.11	gi|408404852|ref|YP_006862835.1|	-	0.002	17.7	0.0	0.21	11.2	0.0	2.4	2	0	0	2	2	2	1	RimK-like	ATP-grasp	domain
ATP-grasp_2	PF08442.10	gi|408404852|ref|YP_006862835.1|	-	0.012	15.2	0.0	0.066	12.8	0.0	2.2	2	0	0	2	2	2	0	ATP-grasp	domain
DUF4336	PF14234.6	gi|408404853|ref|YP_006862836.1|	-	0.039	13.2	0.0	0.044	13.0	0.0	1.0	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4336)
Synaptobrevin	PF00957.21	gi|408404854|ref|YP_006862837.1|	-	0.0051	16.6	0.8	0.0071	16.1	0.1	1.6	2	0	0	2	2	2	1	Synaptobrevin
MnhB	PF04039.13	gi|408404854|ref|YP_006862837.1|	-	0.0081	16.5	0.2	0.0098	16.2	0.2	1.1	1	0	0	1	1	1	1	Domain	related	to	MnhB	subunit	of	Na+/H+	antiporter
SLATT_1	PF18181.1	gi|408404854|ref|YP_006862837.1|	-	0.027	14.4	0.4	0.037	14.0	0.4	1.2	1	0	0	1	1	1	0	SMODS	and	SLOG-associating	2TM	effector	domain	1
Collectrin	PF16959.5	gi|408404854|ref|YP_006862837.1|	-	0.039	13.7	0.0	0.057	13.2	0.0	1.3	1	0	0	1	1	1	0	Renal	amino	acid	transporter
Response_reg	PF00072.24	gi|408404855|ref|YP_006862838.1|	-	2.2e-10	40.7	0.0	2.4e-10	40.6	0.0	1.0	1	0	0	1	1	1	1	Response	regulator	receiver	domain
DUF2255	PF10012.9	gi|408404858|ref|YP_006862841.1|	-	3.2e-11	43.4	0.1	3.8e-11	43.1	0.1	1.1	1	0	0	1	1	1	1	Uncharacterized	protein	conserved	in	bacteria	(DUF2255)
F420H2_quin_red	PF04075.14	gi|408404858|ref|YP_006862841.1|	-	5.3e-10	39.5	0.1	5.7e-10	39.4	0.1	1.1	1	0	0	1	1	1	1	F420H(2)-dependent	quinone	reductase
Metallophos_2	PF12850.7	gi|408404859|ref|YP_006862842.1|	-	2.2e-08	34.5	0.1	3.3e-08	33.9	0.1	1.2	1	0	0	1	1	1	1	Calcineurin-like	phosphoesterase	superfamily	domain
Metallophos	PF00149.28	gi|408404859|ref|YP_006862842.1|	-	4.7e-08	33.8	0.5	1.5e-07	32.1	0.5	1.8	1	1	0	1	1	1	1	Calcineurin-like	phosphoesterase
TRL	PF13146.6	gi|408404860|ref|YP_006862843.1|	-	0.056	13.7	0.0	0.085	13.1	0.0	1.3	1	0	0	1	1	1	0	TRL-like	protein	family
LEA_5	PF00477.17	gi|408404861|ref|YP_006862844.1|	-	1.5e-11	44.7	21.4	4.6e-07	30.3	7.0	3.0	1	1	2	3	3	3	3	Small	hydrophilic	plant	seed	protein
KGG	PF10685.9	gi|408404861|ref|YP_006862844.1|	-	1.8e-06	28.0	20.1	0.063	13.6	0.6	5.8	5	1	0	5	5	5	3	Stress-induced	bacterial	acidophilic	repeat	motif
GARS_A	PF01071.19	gi|408404862|ref|YP_006862845.1|	-	1.6e-78	262.9	0.2	2.2e-78	262.5	0.2	1.2	1	0	0	1	1	1	1	Phosphoribosylglycinamide	synthetase,	ATP-grasp	(A)	domain
GARS_N	PF02844.15	gi|408404862|ref|YP_006862845.1|	-	1.3e-32	112.5	0.0	2.8e-32	111.4	0.0	1.6	1	0	0	1	1	1	1	Phosphoribosylglycinamide	synthetase,	N	domain
GARS_C	PF02843.16	gi|408404862|ref|YP_006862845.1|	-	1.8e-29	101.9	0.4	4e-29	100.7	0.4	1.6	1	0	0	1	1	1	1	Phosphoribosylglycinamide	synthetase,	C	domain
ATP-grasp_3	PF02655.14	gi|408404862|ref|YP_006862845.1|	-	1.5e-06	28.3	0.0	3.2e-06	27.3	0.0	1.5	1	0	0	1	1	1	1	ATP-grasp	domain
CPSase_L_D2	PF02786.17	gi|408404862|ref|YP_006862845.1|	-	7.7e-05	22.3	0.3	0.00027	20.5	0.3	1.9	1	1	0	1	1	1	1	Carbamoyl-phosphate	synthase	L	chain,	ATP	binding	domain
ATP-grasp_2	PF08442.10	gi|408404862|ref|YP_006862845.1|	-	0.00016	21.3	0.2	0.00062	19.4	0.2	1.8	2	0	0	2	2	2	1	ATP-grasp	domain
RimK	PF08443.11	gi|408404862|ref|YP_006862845.1|	-	0.00021	20.9	0.0	0.0011	18.7	0.0	1.9	2	0	0	2	2	2	1	RimK-like	ATP-grasp	domain
ATP-grasp	PF02222.22	gi|408404862|ref|YP_006862845.1|	-	0.0003	20.4	0.0	0.00063	19.4	0.0	1.5	1	0	0	1	1	1	1	ATP-grasp	domain
ATPgrasp_ST	PF14397.6	gi|408404862|ref|YP_006862845.1|	-	0.00064	19.1	0.2	0.068	12.4	0.0	2.5	3	0	0	3	3	3	1	Sugar-transfer	associated	ATP-grasp
Dala_Dala_lig_C	PF07478.13	gi|408404862|ref|YP_006862845.1|	-	0.0018	17.8	0.1	0.0037	16.8	0.1	1.5	1	1	0	1	1	1	1	D-ala	D-ala	ligase	C-terminus
ATP-grasp_4	PF13535.6	gi|408404862|ref|YP_006862845.1|	-	0.0036	16.9	0.0	0.012	15.2	0.0	2.0	1	1	0	1	1	1	1	ATP-grasp	domain
Polysacc_deac_2	PF04748.13	gi|408404862|ref|YP_006862845.1|	-	0.033	13.4	0.1	0.095	11.9	0.1	1.7	1	0	0	1	1	1	0	Divergent	polysaccharide	deacetylase
ATP-grasp_5	PF13549.6	gi|408404862|ref|YP_006862845.1|	-	0.036	13.5	0.1	0.069	12.6	0.1	1.4	1	0	0	1	1	1	0	ATP-grasp	domain
5-FTHF_cyc-lig	PF01812.20	gi|408404863|ref|YP_006862846.1|	-	1.1e-37	129.7	0.0	1.3e-37	129.5	0.0	1.0	1	0	0	1	1	1	1	5-formyltetrahydrofolate	cyclo-ligase	family
THF_DHG_CYH_C	PF02882.19	gi|408404864|ref|YP_006862847.1|	-	6.3e-63	210.9	1.3	9.2e-63	210.3	1.3	1.2	1	0	0	1	1	1	1	Tetrahydrofolate	dehydrogenase/cyclohydrolase,	NAD(P)-binding	domain
THF_DHG_CYH	PF00763.23	gi|408404864|ref|YP_006862847.1|	-	1.6e-36	125.1	0.5	2.9e-36	124.3	0.2	1.6	2	0	0	2	2	2	1	Tetrahydrofolate	dehydrogenase/cyclohydrolase,	catalytic	domain
Semialdhyde_dh	PF01118.24	gi|408404864|ref|YP_006862847.1|	-	0.014	15.8	0.1	0.038	14.4	0.0	1.9	2	1	0	2	2	2	0	Semialdehyde	dehydrogenase,	NAD	binding	domain
AlaDh_PNT_C	PF01262.21	gi|408404864|ref|YP_006862847.1|	-	0.043	13.1	1.2	0.33	10.2	0.1	2.1	2	0	0	2	2	2	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
Hydrolase	PF00702.26	gi|408404864|ref|YP_006862847.1|	-	0.063	13.6	0.1	0.1	12.9	0.1	1.3	1	0	0	1	1	1	0	haloacid	dehalogenase-like	hydrolase
HTH_45	PF14947.6	gi|408404865|ref|YP_006862848.1|	-	1.5e-20	72.9	1.6	1.7e-20	72.7	1.6	1.0	1	0	0	1	1	1	1	Winged	helix-turn-helix
DUF4364	PF14277.6	gi|408404865|ref|YP_006862848.1|	-	4.5e-05	23.2	0.5	5.3e-05	23.0	0.5	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4364)
HTH_27	PF13463.6	gi|408404865|ref|YP_006862848.1|	-	0.015	15.8	0.1	0.019	15.5	0.1	1.2	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
DAGK_cat	PF00781.24	gi|408404866|ref|YP_006862849.1|	-	4.2e-23	81.3	0.3	1e-22	80.1	0.1	1.8	2	0	0	2	2	2	1	Diacylglycerol	kinase	catalytic	domain
NAD_kinase	PF01513.21	gi|408404866|ref|YP_006862849.1|	-	0.0015	17.8	0.0	0.0036	16.5	0.0	1.6	1	0	0	1	1	1	1	ATP-NAD	kinase
RVT_N	PF13655.6	gi|408404867|ref|YP_006862850.1|	-	0.13	12.5	2.7	11	6.4	0.2	3.0	1	1	2	3	3	3	0	N-terminal	domain	of	reverse	transcriptase
Ribosomal_L37e	PF01907.19	gi|408404868|ref|YP_006862851.1|	-	5.6e-25	87.3	11.8	6e-25	87.2	11.8	1.0	1	0	0	1	1	1	1	Ribosomal	protein	L37e
DNA_RNApol_7kD	PF03604.13	gi|408404868|ref|YP_006862851.1|	-	0.0015	18.1	6.4	0.02	14.6	2.2	2.2	2	0	0	2	2	2	2	DNA	directed	RNA	polymerase,	7	kDa	subunit
HypA	PF01155.19	gi|408404868|ref|YP_006862851.1|	-	0.0016	18.4	0.7	0.0018	18.3	0.7	1.1	1	0	0	1	1	1	1	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
zinc_ribbon_6	PF14599.6	gi|408404868|ref|YP_006862851.1|	-	0.023	14.7	2.0	0.032	14.2	2.0	1.2	1	0	0	1	1	1	0	Zinc-ribbon
Rubredoxin_2	PF18073.1	gi|408404868|ref|YP_006862851.1|	-	0.023	14.4	3.0	2.3	8.0	0.9	2.2	2	0	0	2	2	2	0	Rubredoxin	metal	binding	domain
NRDD	PF13597.6	gi|408404868|ref|YP_006862851.1|	-	0.077	11.8	1.7	0.067	12.0	1.7	1.0	1	0	0	1	1	1	0	Anaerobic	ribonucleoside-triphosphate	reductase
zn-ribbon_14	PF16503.5	gi|408404868|ref|YP_006862851.1|	-	0.098	12.2	5.9	1.9	8.0	0.7	2.2	2	0	0	2	2	2	0	Zinc-ribbon
zinc_ribbon_4	PF13717.6	gi|408404868|ref|YP_006862851.1|	-	0.12	12.3	6.6	0.19	11.7	0.7	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
OrfB_Zn_ribbon	PF07282.11	gi|408404868|ref|YP_006862851.1|	-	0.22	11.4	5.6	0.3	11.0	5.6	1.3	1	1	0	1	1	1	0	Putative	transposase	DNA-binding	domain
zf-ribbon_3	PF13248.6	gi|408404868|ref|YP_006862851.1|	-	0.25	10.8	4.8	1	8.9	4.8	1.9	1	1	1	2	2	2	0	zinc-ribbon	domain
UPF0547	PF10571.9	gi|408404868|ref|YP_006862851.1|	-	0.41	10.8	4.7	4	7.6	0.3	2.3	2	0	0	2	2	2	0	Uncharacterised	protein	family	UPF0547
zinc_ribbon_2	PF13240.6	gi|408404868|ref|YP_006862851.1|	-	0.77	9.6	5.9	5.7	6.8	1.0	2.1	2	0	0	2	2	2	0	zinc-ribbon	domain
RNA_POL_M_15KD	PF02150.16	gi|408404868|ref|YP_006862851.1|	-	2.1	8.3	6.3	3.2	7.7	0.8	2.1	1	1	1	2	2	2	0	RNA	polymerases	M/15	Kd	subunit
DUF35_N	PF12172.8	gi|408404868|ref|YP_006862851.1|	-	3.3	7.7	9.3	6.8	6.7	9.3	1.5	1	1	0	1	1	1	0	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
LSM	PF01423.22	gi|408404869|ref|YP_006862852.1|	-	3.6e-23	81.0	1.3	4e-23	80.9	1.3	1.0	1	0	0	1	1	1	1	LSM	domain
SM-ATX	PF14438.6	gi|408404869|ref|YP_006862852.1|	-	0.0012	19.0	0.1	0.0014	18.7	0.1	1.2	1	0	0	1	1	1	1	Ataxin	2	SM	domain
DUF150_C	PF17384.2	gi|408404869|ref|YP_006862852.1|	-	0.086	13.0	0.1	0.12	12.5	0.1	1.3	1	1	0	1	1	1	0	RimP	C-terminal	SH3	domain
Creatininase	PF02633.14	gi|408404870|ref|YP_006862853.1|	-	5.4e-62	209.4	0.0	6.3e-62	209.2	0.0	1.0	1	0	0	1	1	1	1	Creatinine	amidohydrolase
Formyl_trans_N	PF00551.19	gi|408404871|ref|YP_006862854.1|	-	2.4e-45	154.5	0.1	3.2e-45	154.1	0.1	1.1	1	0	0	1	1	1	1	Formyl	transferase
ACT_6	PF13740.6	gi|408404871|ref|YP_006862854.1|	-	6.6e-10	38.8	0.0	1.3e-09	37.9	0.0	1.5	1	0	0	1	1	1	1	ACT	domain
ACT	PF01842.25	gi|408404871|ref|YP_006862854.1|	-	1e-06	28.4	0.6	5.5e-06	26.0	0.1	2.4	2	0	0	2	2	2	1	ACT	domain
ACT_4	PF13291.6	gi|408404871|ref|YP_006862854.1|	-	0.00016	22.2	0.7	0.00033	21.2	0.1	1.9	2	0	0	2	2	2	1	ACT	domain
CbiG_C	PF01890.16	gi|408404871|ref|YP_006862854.1|	-	0.017	15.7	0.1	4.7	7.8	0.0	2.8	3	0	0	3	3	3	0	Cobalamin	synthesis	G	C-terminus
N6_Mtase	PF02384.16	gi|408404872|ref|YP_006862855.1|	-	5.3e-15	55.5	0.1	7.8e-07	28.6	0.1	2.5	2	0	0	2	2	2	2	N-6	DNA	Methylase
Eco57I	PF07669.11	gi|408404872|ref|YP_006862855.1|	-	0.00035	21.1	0.0	0.0013	19.2	0.0	2.1	1	0	0	1	1	1	1	Eco57I	restriction-modification	methylase
MTS	PF05175.14	gi|408404872|ref|YP_006862855.1|	-	0.0012	18.4	0.8	0.28	10.7	0.0	3.3	4	0	0	4	4	4	2	Methyltransferase	small	domain
UPF0020	PF01170.18	gi|408404872|ref|YP_006862855.1|	-	0.0014	18.3	0.0	0.22	11.2	0.0	2.5	2	0	0	2	2	2	2	Putative	RNA	methylase	family	UPF0020
Methyltransf_31	PF13847.6	gi|408404872|ref|YP_006862855.1|	-	0.096	12.5	0.0	0.7	9.7	0.0	2.5	2	0	0	2	2	2	0	Methyltransferase	domain
DDE_Tnp_IS240	PF13610.6	gi|408404873|ref|YP_006862856.1|	-	2.4e-18	66.7	1.8	5.1e-18	65.6	1.8	1.5	1	0	0	1	1	1	1	DDE	domain
rve_3	PF13683.6	gi|408404873|ref|YP_006862856.1|	-	1.8e-10	40.4	0.1	7.6e-10	38.4	0.1	2.1	1	0	0	1	1	1	1	Integrase	core	domain
DDE_Tnp_IS66	PF03050.14	gi|408404873|ref|YP_006862856.1|	-	2.4e-10	40.4	0.7	4.3e-10	39.5	0.1	1.6	2	0	0	2	2	2	1	Transposase	IS66	family
SWIM	PF04434.17	gi|408404873|ref|YP_006862856.1|	-	2.8e-08	33.3	0.1	6.9e-08	32.0	0.1	1.6	1	0	0	1	1	1	1	SWIM	zinc	finger
Zn_Tnp_IS1	PF03811.13	gi|408404873|ref|YP_006862856.1|	-	9.5e-06	25.2	0.2	3.5e-05	23.4	0.2	2.1	1	0	0	1	1	1	1	InsA	N-terminal	domain
Transposase_mut	PF00872.18	gi|408404873|ref|YP_006862856.1|	-	3.2e-05	22.9	1.2	0.0023	16.8	0.0	2.4	2	0	0	2	2	2	2	Transposase,	Mutator	family
rve	PF00665.26	gi|408404873|ref|YP_006862856.1|	-	0.00023	21.3	1.0	0.00042	20.5	0.2	1.9	2	0	0	2	2	2	1	Integrase	core	domain
Octopine_DH	PF02317.17	gi|408404873|ref|YP_006862856.1|	-	0.11	12.5	0.3	0.75	9.9	0.2	2.3	1	1	1	2	2	2	0	NAD/NADP	octopine/nopaline	dehydrogenase,	alpha-helical	domain
KLRAQ	PF10205.9	gi|408404873|ref|YP_006862856.1|	-	0.14	12.4	0.2	0.34	11.2	0.2	1.6	1	0	0	1	1	1	0	Predicted	coiled-coil	domain-containing	protein
MazE_antitoxin	PF04014.18	gi|408404874|ref|YP_006862857.1|	-	1.1e-06	28.4	0.1	1.4e-06	28.0	0.1	1.2	1	0	0	1	1	1	1	Antidote-toxin	recognition	MazE,	bacterial	antitoxin
DDE_Tnp_1	PF01609.21	gi|408404879|ref|YP_006862862.1|	-	2.1e-06	27.6	0.4	1.5e-05	24.7	0.4	1.9	1	1	0	1	1	1	1	Transposase	DDE	domain
DDE_Tnp_1_6	PF13751.6	gi|408404879|ref|YP_006862862.1|	-	0.00038	20.7	0.0	0.00058	20.1	0.0	1.3	1	0	0	1	1	1	1	Transposase	DDE	domain
RAP1	PF07218.11	gi|408404879|ref|YP_006862862.1|	-	0.0026	16.2	0.4	0.0027	16.1	0.4	1.0	1	0	0	1	1	1	1	Rhoptry-associated	protein	1	(RAP-1)
DDE_Tnp_1_2	PF13586.6	gi|408404879|ref|YP_006862862.1|	-	0.056	13.8	0.0	11	6.4	0.0	2.5	3	0	0	3	3	3	0	Transposase	DDE	domain
zf-tcix	PF14952.6	gi|408404880|ref|YP_006862863.1|	-	0.0018	17.8	1.1	0.0027	17.3	1.1	1.3	1	0	0	1	1	1	1	Putative	treble-clef,	zinc-finger,	Zn-binding
Copper-bind	PF00127.20	gi|408404881|ref|YP_006862864.1|	-	7.1e-08	32.8	0.1	7.1e-08	32.8	0.1	2.2	2	0	0	2	2	2	1	Copper	binding	proteins,	plastocyanin/azurin	family
Cupredoxin_1	PF13473.6	gi|408404881|ref|YP_006862864.1|	-	4.2e-06	26.8	1.6	8.6e-06	25.8	0.2	2.2	2	1	0	2	2	2	1	Cupredoxin-like	domain
SAPS	PF04499.15	gi|408404881|ref|YP_006862864.1|	-	0.033	13.0	0.1	0.039	12.7	0.1	1.1	1	0	0	1	1	1	0	SIT4	phosphatase-associated	protein
YuiB	PF14068.6	gi|408404882|ref|YP_006862865.1|	-	0.017	15.7	4.5	0.017	15.7	4.5	2.3	1	1	1	2	2	2	0	Putative	membrane	protein
DUF2418	PF10332.9	gi|408404882|ref|YP_006862865.1|	-	0.055	14.0	0.7	0.71	10.4	0.1	2.2	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2418)
OppC_N	PF12911.7	gi|408404882|ref|YP_006862865.1|	-	0.79	9.7	3.8	11	6.1	2.7	2.8	2	1	0	2	2	2	0	N-terminal	TM	domain	of	oligopeptide	transport	permease	C
Tmemb_14	PF03647.13	gi|408404882|ref|YP_006862865.1|	-	8.7	7.2	9.8	29	5.5	0.8	2.6	2	0	0	2	2	2	0	Transmembrane	proteins	14C
PAC2	PF09754.9	gi|408404883|ref|YP_006862866.1|	-	2.3e-41	142.2	0.0	2.6e-41	142.0	0.0	1.0	1	0	0	1	1	1	1	PAC2	family
tRNA_anti-codon	PF01336.25	gi|408404884|ref|YP_006862867.1|	-	2.6e-08	33.7	0.2	3.3e-08	33.4	0.2	1.1	1	0	0	1	1	1	1	OB-fold	nucleic	acid	binding	domain
REPA_OB_2	PF16900.5	gi|408404884|ref|YP_006862867.1|	-	0.00016	21.5	0.3	0.00019	21.3	0.3	1.1	1	0	0	1	1	1	1	Replication	protein	A	OB	domain
CDC24_OB3	PF17244.2	gi|408404884|ref|YP_006862867.1|	-	0.015	15.0	0.0	0.016	14.9	0.0	1.0	1	0	0	1	1	1	0	Cell	division	control	protein	24,	OB	domain	3
TerC	PF03741.16	gi|408404885|ref|YP_006862868.1|	-	0.029	14.1	0.2	0.034	13.8	0.2	1.1	1	0	0	1	1	1	0	Integral	membrane	protein	TerC	family
bact-PGI_C	PF10432.9	gi|408404886|ref|YP_006862869.1|	-	0.063	13.3	0.0	0.1	12.7	0.0	1.4	1	0	0	1	1	1	0	Bacterial	phospho-glucose	isomerase	C-terminal	SIS	domain
HTH_Mga	PF08280.11	gi|408404887|ref|YP_006862870.1|	-	0.0012	18.8	0.0	0.0022	18.0	0.0	1.3	1	0	0	1	1	1	1	M	protein	trans-acting	positive	regulator	(MGA)	HTH	domain
HTH_11	PF08279.12	gi|408404887|ref|YP_006862870.1|	-	0.002	18.0	0.0	0.0032	17.4	0.0	1.4	1	0	0	1	1	1	1	HTH	domain
HTH_23	PF13384.6	gi|408404887|ref|YP_006862870.1|	-	0.0066	16.2	0.0	0.022	14.6	0.0	1.8	1	1	1	2	2	2	1	Homeodomain-like	domain
HTH_38	PF13936.6	gi|408404887|ref|YP_006862870.1|	-	0.016	15.0	0.0	0.063	13.0	0.0	2.0	2	0	0	2	2	2	0	Helix-turn-helix	domain
FUR	PF01475.19	gi|408404887|ref|YP_006862870.1|	-	0.05	13.7	0.1	0.085	13.0	0.1	1.6	1	1	0	1	1	1	0	Ferric	uptake	regulator	family
HTH_IclR	PF09339.10	gi|408404887|ref|YP_006862870.1|	-	0.059	13.2	0.0	0.61	9.9	0.0	2.1	2	0	0	2	2	2	0	IclR	helix-turn-helix	domain
Sigma70_r4_2	PF08281.12	gi|408404887|ref|YP_006862870.1|	-	0.071	12.8	0.0	0.14	11.8	0.0	1.5	1	0	0	1	1	1	0	Sigma-70,	region	4
Rrf2	PF02082.20	gi|408404887|ref|YP_006862870.1|	-	0.099	13.0	0.0	0.13	12.6	0.0	1.2	1	0	0	1	1	1	0	Transcriptional	regulator
HTH_36	PF13730.6	gi|408404887|ref|YP_006862870.1|	-	0.15	12.1	0.0	0.28	11.1	0.0	1.5	1	0	0	1	1	1	0	Helix-turn-helix	domain
DUF192	PF02643.15	gi|408404889|ref|YP_006862872.1|	-	2.3e-20	72.5	0.0	3e-20	72.2	0.0	1.1	1	0	0	1	1	1	1	Uncharacterized	ACR,	COG1430
Putative_PNPOx	PF01243.20	gi|408404890|ref|YP_006862873.1|	-	1.1e-12	48.0	0.0	1.5e-12	47.6	0.0	1.2	1	0	0	1	1	1	1	Pyridoxamine	5'-phosphate	oxidase
Pyridox_ox_2	PF12900.7	gi|408404890|ref|YP_006862873.1|	-	2.7e-06	27.4	0.0	3.1e-06	27.2	0.0	1.1	1	0	0	1	1	1	1	Pyridoxamine	5'-phosphate	oxidase
AMP-binding	PF00501.28	gi|408404891|ref|YP_006862874.1|	-	8.1e-100	334.4	0.0	9.7e-100	334.1	0.0	1.1	1	0	0	1	1	1	1	AMP-binding	enzyme
AMP-binding_C	PF13193.6	gi|408404891|ref|YP_006862874.1|	-	2.8e-24	85.9	2.3	5.6e-24	84.9	0.1	2.4	3	0	0	3	3	3	1	AMP-binding	enzyme	C-terminal	domain
ACAS_N	PF16177.5	gi|408404891|ref|YP_006862874.1|	-	9.7e-21	73.4	2.0	2.6e-20	72.1	2.0	1.8	1	0	0	1	1	1	1	Acetyl-coenzyme	A	synthetase	N-terminus
HTH_45	PF14947.6	gi|408404892|ref|YP_006862875.1|	-	1.1e-21	76.6	1.4	1.2e-21	76.4	1.4	1.0	1	0	0	1	1	1	1	Winged	helix-turn-helix
DUF4364	PF14277.6	gi|408404892|ref|YP_006862875.1|	-	2e-05	24.4	0.2	2e-05	24.4	0.2	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4364)
HTH_27	PF13463.6	gi|408404892|ref|YP_006862875.1|	-	0.011	16.2	0.1	0.016	15.6	0.1	1.3	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
ANAPC2	PF08672.11	gi|408404892|ref|YP_006862875.1|	-	0.018	15.5	0.6	0.12	12.9	0.1	2.2	1	1	1	2	2	2	0	Anaphase	promoting	complex	(APC)	subunit	2
CdvA	PF18822.1	gi|408404893|ref|YP_006862876.1|	-	3.5e-29	101.1	13.9	5.1e-29	100.6	13.9	1.2	1	0	0	1	1	1	1	CdvA-like	coiled-coil	domain
Ribosomal_L29	PF00831.23	gi|408404893|ref|YP_006862876.1|	-	0.0021	18.0	1.8	0.039	13.9	0.1	2.7	1	1	1	2	2	2	1	Ribosomal	L29	protein
PRC	PF05239.16	gi|408404893|ref|YP_006862876.1|	-	0.0038	17.3	3.0	0.0091	16.1	3.0	1.6	1	0	0	1	1	1	1	PRC-barrel	domain
Atg14	PF10186.9	gi|408404893|ref|YP_006862876.1|	-	2	7.4	7.7	2.5	7.1	7.7	1.2	1	0	0	1	1	1	0	Vacuolar	sorting	38	and	autophagy-related	subunit	14
DUF724	PF05266.14	gi|408404893|ref|YP_006862876.1|	-	2.6	7.8	10.5	1.4	8.7	7.1	1.9	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF724)
DUF1840	PF08895.11	gi|408404893|ref|YP_006862876.1|	-	6.7	7.1	8.9	0.4	11.0	2.8	2.1	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF1840)
Thy1	PF02511.15	gi|408404894|ref|YP_006862877.1|	-	7e-39	133.6	2.4	4.3e-19	69.0	2.1	2.3	2	0	0	2	2	2	2	Thymidylate	synthase	complementing	protein
DUF3349	PF11829.8	gi|408404894|ref|YP_006862877.1|	-	0.02	15.7	0.0	0.074	13.8	0.0	2.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3349)
Phage_holin_T	PF11031.8	gi|408404894|ref|YP_006862877.1|	-	0.06	12.8	0.0	0.12	11.8	0.0	1.4	1	0	0	1	1	1	0	Bacteriophage	T	holin
Guanylate_kin	PF00625.21	gi|408404894|ref|YP_006862877.1|	-	0.098	12.3	0.2	0.69	9.6	0.0	2.4	3	0	0	3	3	3	0	Guanylate	kinase
DUF1400	PF07176.11	gi|408404894|ref|YP_006862877.1|	-	0.16	12.3	0.2	0.47	10.7	0.1	1.8	2	0	0	2	2	2	0	Alpha/beta	hydrolase	of	unknown	function	(DUF1400)
Fer4	PF00037.27	gi|408404897|ref|YP_006862880.1|	-	1.1e-08	34.5	22.5	6e-05	22.7	2.8	3.1	3	0	0	3	3	3	2	4Fe-4S	binding	domain
Fer4_7	PF12838.7	gi|408404897|ref|YP_006862880.1|	-	1.8e-07	31.6	16.2	2.6e-06	27.9	8.9	2.3	2	1	1	3	3	2	2	4Fe-4S	dicluster	domain
Fer4_9	PF13187.6	gi|408404897|ref|YP_006862880.1|	-	6.5e-06	26.2	7.8	6.5e-06	26.2	7.8	2.1	2	0	0	2	2	2	1	4Fe-4S	dicluster	domain
ETF_QO	PF05187.13	gi|408404897|ref|YP_006862880.1|	-	8.6e-06	25.8	1.7	1.4e-05	25.2	1.0	1.6	2	0	0	2	2	2	1	Electron	transfer	flavoprotein-ubiquinone	oxidoreductase,	4Fe-4S
Fer4_10	PF13237.6	gi|408404897|ref|YP_006862880.1|	-	4.1e-05	23.6	9.8	4.1e-05	23.6	9.8	2.1	2	1	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_21	PF14697.6	gi|408404897|ref|YP_006862880.1|	-	0.00012	22.1	8.9	0.00012	22.1	8.9	1.9	2	1	0	2	2	2	1	4Fe-4S	dicluster	domain
Tenui_PVC2	PF06656.11	gi|408404897|ref|YP_006862880.1|	-	0.00049	18.2	0.1	0.00063	17.8	0.1	1.1	1	0	0	1	1	1	1	Tenuivirus	PVC2	protein
Fer4_8	PF13183.6	gi|408404897|ref|YP_006862880.1|	-	0.011	16.1	7.5	0.011	16.1	7.5	2.4	2	1	1	3	3	3	0	4Fe-4S	dicluster	domain
Fer4_6	PF12837.7	gi|408404897|ref|YP_006862880.1|	-	0.037	14.1	19.4	0.13	12.3	4.1	3.0	3	0	0	3	3	3	0	4Fe-4S	binding	domain
Fer4_13	PF13370.6	gi|408404897|ref|YP_006862880.1|	-	0.054	14.1	10.6	0.85	10.2	0.9	2.7	2	0	0	2	2	2	0	4Fe-4S	single	cluster	domain	of	Ferredoxin	I
Fer4_17	PF13534.6	gi|408404897|ref|YP_006862880.1|	-	0.085	13.4	9.8	0.76	10.4	1.0	3.1	3	0	0	3	3	3	0	4Fe-4S	dicluster	domain
Fer4_3	PF12798.7	gi|408404897|ref|YP_006862880.1|	-	0.096	13.7	6.0	0.096	13.7	6.0	2.8	3	0	0	3	3	2	0	4Fe-4S	binding	domain
Me-amine-dh_L	PF02975.14	gi|408404897|ref|YP_006862880.1|	-	0.85	10.1	6.0	0.45	11.0	3.4	1.8	2	0	0	2	2	2	0	Methylamine	dehydrogenase,	L	chain
Fer4_16	PF13484.6	gi|408404897|ref|YP_006862880.1|	-	1.1	10.2	16.5	1.7	9.6	3.6	2.8	2	1	1	3	3	2	0	4Fe-4S	double	cluster	binding	domain
Fer4_2	PF12797.7	gi|408404897|ref|YP_006862880.1|	-	1.6	9.0	17.5	1.9	8.7	3.3	3.1	3	0	0	3	3	3	0	4Fe-4S	binding	domain
Fer4_18	PF13746.6	gi|408404897|ref|YP_006862880.1|	-	7.9	6.7	10.2	2.6	8.3	2.4	2.4	1	1	1	2	2	2	0	4Fe-4S	dicluster	domain
Glyco_tranf_2_3	PF13641.6	gi|408404898|ref|YP_006862881.1|	-	3.9e-23	82.6	0.0	7.4e-23	81.6	0.0	1.5	1	0	0	1	1	1	1	Glycosyltransferase	like	family	2
Glycos_transf_2	PF00535.26	gi|408404898|ref|YP_006862881.1|	-	5.1e-19	68.7	0.0	1.3e-18	67.4	0.0	1.7	2	0	0	2	2	2	1	Glycosyl	transferase	family	2
Glyco_trans_2_3	PF13632.6	gi|408404898|ref|YP_006862881.1|	-	6.1e-19	68.7	1.4	6.1e-19	68.7	1.4	2.3	2	0	0	2	2	2	1	Glycosyl	transferase	family	group	2
Glyco_transf_21	PF13506.6	gi|408404898|ref|YP_006862881.1|	-	1.1e-09	38.0	0.1	2.7e-09	36.8	0.1	1.6	1	0	0	1	1	1	1	Glycosyl	transferase	family	21
Cellulose_synt	PF03552.14	gi|408404898|ref|YP_006862881.1|	-	0.00021	20.0	0.7	0.00021	20.0	0.7	1.6	2	0	0	2	2	2	1	Cellulose	synthase
CtIP_N	PF10482.9	gi|408404899|ref|YP_006862882.1|	-	0.051	13.6	0.4	0.39	10.8	0.0	2.2	2	0	0	2	2	2	0	Tumour-suppressor	protein	CtIP	N-terminal	domain
Rota_NSP4	PF01452.16	gi|408404900|ref|YP_006862883.1|	-	0.061	13.0	0.1	0.11	12.1	0.1	1.4	1	0	0	1	1	1	0	Rotavirus	non	structural	protein
Phasin	PF05597.11	gi|408404904|ref|YP_006862887.1|	-	0.002	18.1	0.4	0.0024	17.9	0.4	1.1	1	0	0	1	1	1	1	Poly(hydroxyalcanoate)	granule	associated	protein	(phasin)
FerA	PF08165.11	gi|408404904|ref|YP_006862887.1|	-	0.0079	16.1	0.2	6.3	6.8	0.0	2.8	2	1	0	2	2	2	2	FerA	(NUC095)	domain
AF0941-like	PF14591.6	gi|408404904|ref|YP_006862887.1|	-	0.0085	16.6	0.2	0.0094	16.5	0.2	1.1	1	0	0	1	1	1	1	AF0941-like
Phage_Mu_Gam	PF07352.12	gi|408404904|ref|YP_006862887.1|	-	0.0094	15.9	1.1	0.017	15.1	0.9	1.5	1	1	0	1	1	1	1	Bacteriophage	Mu	Gam	like	protein
ExsD	PF16806.5	gi|408404904|ref|YP_006862887.1|	-	0.054	13.4	0.2	0.054	13.4	0.2	1.1	1	0	0	1	1	1	0	Antiactivator	protein	ExsD
AphA_like	PF14557.6	gi|408404904|ref|YP_006862887.1|	-	0.064	13.0	0.1	0.074	12.8	0.1	1.1	1	0	0	1	1	1	0	Putative	AphA-like	transcriptional	regulator
Glyco_transf_90	PF05686.12	gi|408404905|ref|YP_006862888.1|	-	0.066	12.1	0.1	0.082	11.8	0.1	1.1	1	0	0	1	1	1	0	Glycosyl	transferase	family	90
ALAD	PF00490.21	gi|408404906|ref|YP_006862889.1|	-	1.3e-138	461.5	0.5	1.5e-138	461.3	0.5	1.0	1	0	0	1	1	1	1	Delta-aminolevulinic	acid	dehydratase
DUF2674	PF10879.8	gi|408404906|ref|YP_006862889.1|	-	0.0017	17.9	0.0	0.0041	16.7	0.0	1.6	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF2674)
SH3_6	PF12913.7	gi|408404906|ref|YP_006862889.1|	-	0.13	11.9	0.0	0.35	10.5	0.0	1.8	1	0	0	1	1	1	0	SH3	domain	(SH3b1	type)
GlutR_N	PF05201.15	gi|408404907|ref|YP_006862890.1|	-	3.1e-37	127.6	0.0	1.2e-36	125.7	0.0	1.9	2	0	0	2	2	2	1	Glutamyl-tRNAGlu	reductase,	N-terminal	domain
Shikimate_DH	PF01488.20	gi|408404907|ref|YP_006862890.1|	-	1.7e-29	102.7	0.2	1.7e-29	102.7	0.2	1.8	2	0	0	2	2	2	1	Shikimate	/	quinate	5-dehydrogenase
GlutR_dimer	PF00745.20	gi|408404907|ref|YP_006862890.1|	-	4.9e-18	65.4	0.7	9.2e-18	64.5	0.7	1.5	1	0	0	1	1	1	1	Glutamyl-tRNAGlu	reductase,	dimerisation	domain
F420_oxidored	PF03807.17	gi|408404907|ref|YP_006862890.1|	-	2.7e-05	24.6	0.1	0.00012	22.6	0.0	2.3	3	0	0	3	3	3	1	NADP	oxidoreductase	coenzyme	F420-dependent
2-Hacid_dh_C	PF02826.19	gi|408404907|ref|YP_006862890.1|	-	0.00017	21.0	0.0	0.00031	20.1	0.0	1.4	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
Arb2	PF09757.9	gi|408404907|ref|YP_006862890.1|	-	0.029	13.5	0.0	0.053	12.6	0.0	1.3	1	0	0	1	1	1	0	Arb2	domain
TrkA_N	PF02254.18	gi|408404907|ref|YP_006862890.1|	-	0.048	13.9	0.0	2.2	8.6	0.0	2.6	2	0	0	2	2	2	0	TrkA-N	domain
ICAT	PF06384.11	gi|408404907|ref|YP_006862890.1|	-	0.057	13.7	0.2	0.37	11.1	0.1	2.4	2	1	0	2	2	2	0	Beta-catenin-interacting	protein	ICAT
NAD_binding_2	PF03446.15	gi|408404907|ref|YP_006862890.1|	-	0.062	13.5	0.5	0.3	11.3	0.0	2.1	1	1	1	2	2	2	0	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
AAA_19	PF13245.6	gi|408404907|ref|YP_006862890.1|	-	0.19	12.0	0.7	0.52	10.6	0.7	1.8	1	1	0	1	1	1	0	AAA	domain
NAD_binding_7	PF13241.6	gi|408404908|ref|YP_006862891.1|	-	1.8e-20	73.3	0.5	3.5e-20	72.4	0.1	1.6	2	0	0	2	2	2	1	Putative	NAD(P)-binding
Sirohm_synth_M	PF14824.6	gi|408404908|ref|YP_006862891.1|	-	3.3e-07	29.6	0.2	9.7e-07	28.1	0.2	1.8	1	0	0	1	1	1	1	Sirohaem	biosynthesis	protein	central
TrkA_N	PF02254.18	gi|408404908|ref|YP_006862891.1|	-	1.5e-05	25.2	0.9	3e-05	24.2	0.4	1.8	1	1	0	2	2	2	1	TrkA-N	domain
Shikimate_DH	PF01488.20	gi|408404908|ref|YP_006862891.1|	-	0.0025	17.9	0.9	0.0043	17.1	0.2	1.9	2	0	0	2	2	2	1	Shikimate	/	quinate	5-dehydrogenase
CysG_dimeriser	PF10414.9	gi|408404908|ref|YP_006862891.1|	-	0.014	15.1	0.2	0.028	14.1	0.2	1.5	1	0	0	1	1	1	0	Sirohaem	synthase	dimerisation	region
NleF_casp_inhib	PF16809.5	gi|408404908|ref|YP_006862891.1|	-	0.034	14.1	0.8	0.19	11.6	0.4	2.1	2	0	0	2	2	2	0	NleF	caspase	inhibitor
Spt5-NGN	PF03439.13	gi|408404909|ref|YP_006862892.1|	-	2.5e-21	75.4	0.0	3.8e-21	74.8	0.0	1.3	1	0	0	1	1	1	1	Early	transcription	elongation	factor	of	RNA	pol	II,	NGN	section
KOW	PF00467.29	gi|408404909|ref|YP_006862892.1|	-	2.7e-06	27.1	0.0	6.6e-06	25.9	0.0	1.7	1	0	0	1	1	1	1	KOW	motif
Rib_recp_KP_reg	PF05104.12	gi|408404909|ref|YP_006862892.1|	-	0.072	14.1	11.1	0.13	13.4	11.1	1.3	1	0	0	1	1	1	0	Ribosome	receptor	lysine/proline	rich	region
Etmic-2	PF06670.11	gi|408404909|ref|YP_006862892.1|	-	0.16	10.9	3.2	0.29	10.0	3.2	1.4	1	0	0	1	1	1	0	Microneme	protein	Etmic-2
tRNA_deacylase	PF04414.12	gi|408404911|ref|YP_006862894.1|	-	1.4e-63	214.1	0.0	1.6e-63	213.9	0.0	1.0	1	0	0	1	1	1	1	D-aminoacyl-tRNA	deacylase
DNA_binding_1	PF01035.20	gi|408404912|ref|YP_006862895.1|	-	1.6e-30	105.0	0.0	2e-30	104.8	0.0	1.1	1	0	0	1	1	1	1	6-O-methylguanine	DNA	methyltransferase,	DNA	binding	domain
Ribosomal_L19e	PF01280.20	gi|408404913|ref|YP_006862896.1|	-	2.7e-40	137.7	6.1	3e-40	137.6	6.1	1.0	1	0	0	1	1	1	1	Ribosomal	protein	L19e
HTH_12	PF08461.10	gi|408404913|ref|YP_006862896.1|	-	0.0068	16.3	0.1	0.018	14.9	0.1	1.8	1	0	0	1	1	1	1	Ribonuclease	R	winged-helix	domain
Ribosomal_L32e	PF01655.18	gi|408404914|ref|YP_006862897.1|	-	2.2e-40	137.4	0.4	2.8e-40	137.1	0.4	1.1	1	0	0	1	1	1	1	Ribosomal	protein	L32
HEM4	PF02602.15	gi|408404914|ref|YP_006862897.1|	-	0.063	12.6	0.0	0.075	12.4	0.0	1.1	1	0	0	1	1	1	0	Uroporphyrinogen-III	synthase	HemD
GvpD	PF07088.11	gi|408404916|ref|YP_006862899.1|	-	6e-24	84.5	0.2	4.6e-19	68.4	0.1	2.7	1	1	1	2	2	2	2	GvpD	gas	vesicle	protein
ATPase	PF06745.13	gi|408404916|ref|YP_006862899.1|	-	4.8e-13	49.0	0.1	2.6e-11	43.3	0.1	2.8	2	1	0	2	2	2	1	KaiC
AAA_22	PF13401.6	gi|408404916|ref|YP_006862899.1|	-	2e-08	34.6	0.0	3.8e-08	33.7	0.0	1.4	1	0	0	1	1	1	1	AAA	domain
AAA_16	PF13191.6	gi|408404916|ref|YP_006862899.1|	-	1e-05	26.0	0.0	3.2e-05	24.4	0.0	1.8	1	1	0	1	1	1	1	AAA	ATPase	domain
NACHT	PF05729.12	gi|408404916|ref|YP_006862899.1|	-	2.9e-05	24.1	0.0	0.00063	19.7	0.0	2.6	2	1	0	2	2	2	1	NACHT	domain
AAA	PF00004.29	gi|408404916|ref|YP_006862899.1|	-	0.00051	20.5	0.0	0.0018	18.7	0.0	1.9	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_14	PF13173.6	gi|408404916|ref|YP_006862899.1|	-	0.0022	18.0	0.8	0.091	12.8	0.1	2.6	2	1	1	3	3	2	1	AAA	domain
AAA_5	PF07728.14	gi|408404916|ref|YP_006862899.1|	-	0.004	17.2	0.0	0.0072	16.3	0.0	1.4	1	0	0	1	1	1	1	AAA	domain	(dynein-related	subfamily)
TIP49	PF06068.13	gi|408404916|ref|YP_006862899.1|	-	0.0085	15.3	0.0	0.015	14.6	0.0	1.2	1	0	0	1	1	1	1	TIP49	P-loop	domain
NB-ARC	PF00931.22	gi|408404916|ref|YP_006862899.1|	-	0.012	14.8	0.0	0.026	13.7	0.0	1.6	1	1	0	1	1	1	0	NB-ARC	domain
DUF2075	PF09848.9	gi|408404916|ref|YP_006862899.1|	-	0.014	14.6	0.0	0.032	13.5	0.0	1.6	2	0	0	2	2	2	0	Uncharacterized	conserved	protein	(DUF2075)
T2SSE	PF00437.20	gi|408404916|ref|YP_006862899.1|	-	0.03	13.4	0.0	0.047	12.7	0.0	1.3	1	0	0	1	1	1	0	Type	II/IV	secretion	system	protein
ATPase_2	PF01637.18	gi|408404916|ref|YP_006862899.1|	-	0.051	13.5	0.0	0.12	12.3	0.0	1.6	1	0	0	1	1	1	0	ATPase	domain	predominantly	from	Archaea
Sigma54_activat	PF00158.26	gi|408404916|ref|YP_006862899.1|	-	0.058	13.1	0.0	0.1	12.3	0.0	1.3	1	0	0	1	1	1	0	Sigma-54	interaction	domain
AAA_7	PF12775.7	gi|408404916|ref|YP_006862899.1|	-	0.059	12.9	0.0	0.1	12.1	0.0	1.3	1	0	0	1	1	1	0	P-loop	containing	dynein	motor	region
Viral_helicase1	PF01443.18	gi|408404916|ref|YP_006862899.1|	-	0.1	12.3	0.0	0.16	11.7	0.0	1.3	1	0	0	1	1	1	0	Viral	(Superfamily	1)	RNA	helicase
AAA_30	PF13604.6	gi|408404916|ref|YP_006862899.1|	-	0.11	12.2	0.0	0.18	11.5	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
ResIII	PF04851.15	gi|408404916|ref|YP_006862899.1|	-	0.11	12.4	0.6	0.26	11.3	0.6	1.6	1	1	0	1	1	1	0	Type	III	restriction	enzyme,	res	subunit
Pox_A32	PF04665.12	gi|408404916|ref|YP_006862899.1|	-	0.12	11.8	0.4	0.23	10.9	0.4	1.4	1	0	0	1	1	1	0	Poxvirus	A32	protein
AAA_24	PF13479.6	gi|408404916|ref|YP_006862899.1|	-	0.18	11.5	1.2	0.63	9.7	1.2	1.9	1	1	0	1	1	1	0	AAA	domain
cobW	PF02492.19	gi|408404916|ref|YP_006862899.1|	-	0.34	10.5	0.7	0.68	9.5	0.2	1.7	2	0	0	2	2	2	0	CobW/HypB/UreG,	nucleotide-binding	domain
HTH_45	PF14947.6	gi|408404917|ref|YP_006862900.1|	-	2.5e-20	72.2	0.7	3e-20	72.0	0.7	1.1	1	0	0	1	1	1	1	Winged	helix-turn-helix
DUF4364	PF14277.6	gi|408404917|ref|YP_006862900.1|	-	3e-06	27.1	0.2	3.6e-06	26.8	0.2	1.3	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4364)
DUF1495	PF07381.11	gi|408404917|ref|YP_006862900.1|	-	9.1e-06	25.4	0.1	0.00031	20.5	0.0	2.1	1	1	1	2	2	2	1	Winged	helix	DNA-binding	domain	(DUF1495)
HTH_27	PF13463.6	gi|408404917|ref|YP_006862900.1|	-	0.064	13.8	0.0	0.086	13.4	0.0	1.2	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
HTH_34	PF13601.6	gi|408404917|ref|YP_006862900.1|	-	0.095	12.9	0.0	0.12	12.6	0.0	1.4	1	1	0	1	1	1	0	Winged	helix	DNA-binding	domain
Mrr_N	PF14338.6	gi|408404917|ref|YP_006862900.1|	-	0.15	12.2	0.0	0.34	11.0	0.0	1.7	1	1	0	1	1	1	0	Mrr	N-terminal	domain
HTH_45	PF14947.6	gi|408404918|ref|YP_006862901.1|	-	2.4e-15	56.2	0.4	2.8e-15	56.1	0.4	1.1	1	0	0	1	1	1	1	Winged	helix-turn-helix
TrmB	PF01978.19	gi|408404918|ref|YP_006862901.1|	-	0.00096	19.0	0.0	0.0014	18.4	0.0	1.2	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HxlR	PF01638.17	gi|408404918|ref|YP_006862901.1|	-	0.12	12.2	0.0	0.14	12.0	0.0	1.1	1	0	0	1	1	1	0	HxlR-like	helix-turn-helix
BshC	PF10079.9	gi|408404919|ref|YP_006862902.1|	-	1e-05	24.5	0.0	3.8e-05	22.6	0.0	1.7	1	1	0	1	1	1	1	Bacillithiol	biosynthesis	BshC
AAA_24	PF13479.6	gi|408404919|ref|YP_006862902.1|	-	0.19	11.5	0.0	0.31	10.7	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
PIG-L	PF02585.17	gi|408404920|ref|YP_006862903.1|	-	5.3e-22	78.8	0.1	8e-22	78.3	0.1	1.3	1	0	0	1	1	1	1	GlcNAc-PI	de-N-acetylase
Glyco_transf_4	PF13439.6	gi|408404920|ref|YP_006862903.1|	-	0.16	12.0	0.0	0.24	11.4	0.0	1.3	1	0	0	1	1	1	0	Glycosyltransferase	Family	4
SNAP	PF14938.6	gi|408404921|ref|YP_006862904.1|	-	1.2e-05	24.9	1.5	1.5e-05	24.5	1.5	1.1	1	0	0	1	1	1	1	Soluble	NSF	attachment	protein,	SNAP
MIT	PF04212.18	gi|408404921|ref|YP_006862904.1|	-	0.096	12.8	1.2	0.78	9.8	0.0	2.7	2	1	1	3	3	3	0	MIT	(microtubule	interacting	and	transport)	domain
Ig_6	PF18452.1	gi|408404921|ref|YP_006862904.1|	-	0.098	12.2	0.0	0.19	11.3	0.0	1.5	1	0	0	1	1	1	0	Immunoglobulin	domain
Glycos_transf_1	PF00534.20	gi|408404922|ref|YP_006862905.1|	-	1.2e-31	109.6	0.0	2.1e-31	108.8	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
DUF3492	PF11997.8	gi|408404922|ref|YP_006862905.1|	-	3.1e-30	105.8	0.0	4.4e-30	105.3	0.0	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF3492)
Glyco_trans_1_4	PF13692.6	gi|408404922|ref|YP_006862905.1|	-	3.6e-28	98.6	0.0	1e-27	97.2	0.1	1.7	2	0	0	2	2	2	1	Glycosyl	transferases	group	1
Glyco_transf_4	PF13439.6	gi|408404922|ref|YP_006862905.1|	-	5.6e-12	46.0	0.0	1.4e-11	44.7	0.0	1.7	1	0	0	1	1	1	1	Glycosyltransferase	Family	4
Glyco_trans_1_2	PF13524.6	gi|408404922|ref|YP_006862905.1|	-	1.1e-08	35.4	0.0	2.9e-08	34.0	0.0	1.7	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_4_4	PF13579.6	gi|408404922|ref|YP_006862905.1|	-	2.4e-06	28.1	0.0	4.3e-06	27.2	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	transferase	4-like	domain
Epimerase	PF01370.21	gi|408404923|ref|YP_006862906.1|	-	1.2e-63	214.8	0.2	1.5e-63	214.5	0.2	1.1	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
GDP_Man_Dehyd	PF16363.5	gi|408404923|ref|YP_006862906.1|	-	1.7e-60	205.2	0.0	2.3e-60	204.8	0.0	1.2	1	0	0	1	1	1	1	GDP-mannose	4,6	dehydratase
Polysacc_synt_2	PF02719.15	gi|408404923|ref|YP_006862906.1|	-	1.5e-23	83.4	0.1	3.6e-23	82.1	0.1	1.5	1	1	0	1	1	1	1	Polysaccharide	biosynthesis	protein
3Beta_HSD	PF01073.19	gi|408404923|ref|YP_006862906.1|	-	6.4e-22	77.9	0.4	9e-22	77.4	0.4	1.2	1	0	0	1	1	1	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
RmlD_sub_bind	PF04321.17	gi|408404923|ref|YP_006862906.1|	-	3.7e-12	45.9	0.0	4.9e-12	45.5	0.0	1.1	1	0	0	1	1	1	1	RmlD	substrate	binding	domain
NAD_binding_4	PF07993.12	gi|408404923|ref|YP_006862906.1|	-	2.1e-10	40.2	1.1	1.1e-07	31.3	1.1	2.8	1	1	0	1	1	1	1	Male	sterility	protein
NAD_binding_10	PF13460.6	gi|408404923|ref|YP_006862906.1|	-	4.3e-08	33.3	0.0	6.4e-08	32.7	0.0	1.2	1	0	0	1	1	1	1	NAD(P)H-binding
adh_short	PF00106.25	gi|408404923|ref|YP_006862906.1|	-	4.3e-06	26.3	0.2	1.4e-05	24.6	0.2	1.9	1	1	0	1	1	1	1	short	chain	dehydrogenase
NmrA	PF05368.13	gi|408404923|ref|YP_006862906.1|	-	2.4e-05	24.0	0.0	3.6e-05	23.4	0.0	1.4	1	1	0	1	1	1	1	NmrA-like	family
KR	PF08659.10	gi|408404923|ref|YP_006862906.1|	-	0.058	13.3	3.8	0.13	12.2	1.1	2.7	2	1	0	2	2	2	0	KR	domain
ATPgrasp_Ter	PF15632.6	gi|408404925|ref|YP_006862908.1|	-	3.7e-15	55.8	0.0	6.1e-15	55.1	0.0	1.3	1	0	0	1	1	1	1	ATP-grasp	in	the	biosynthetic	pathway	with	Ter	operon
ATP-grasp_3	PF02655.14	gi|408404925|ref|YP_006862908.1|	-	4.8e-14	52.7	0.0	6.7e-14	52.2	0.0	1.2	1	0	0	1	1	1	1	ATP-grasp	domain
CPSase_L_D2	PF02786.17	gi|408404925|ref|YP_006862908.1|	-	4.7e-05	23.0	0.0	0.026	14.0	0.0	2.3	2	0	0	2	2	2	2	Carbamoyl-phosphate	synthase	L	chain,	ATP	binding	domain
ATP-grasp_4	PF13535.6	gi|408404925|ref|YP_006862908.1|	-	6e-05	22.7	0.0	0.0009	18.9	0.0	2.6	1	1	0	1	1	1	1	ATP-grasp	domain
Dala_Dala_lig_C	PF07478.13	gi|408404925|ref|YP_006862908.1|	-	0.0014	18.2	0.0	0.002	17.7	0.0	1.2	1	0	0	1	1	1	1	D-ala	D-ala	ligase	C-terminus
RimK	PF08443.11	gi|408404925|ref|YP_006862908.1|	-	0.036	13.7	0.0	0.064	12.8	0.0	1.4	1	0	0	1	1	1	0	RimK-like	ATP-grasp	domain
Metallophos	PF00149.28	gi|408404926|ref|YP_006862909.1|	-	1.8e-25	90.6	0.0	2.2e-25	90.3	0.0	1.1	1	0	0	1	1	1	1	Calcineurin-like	phosphoesterase
Metallophos_2	PF12850.7	gi|408404926|ref|YP_006862909.1|	-	1e-05	25.8	0.0	1.7e-05	25.1	0.0	1.2	1	0	0	1	1	1	1	Calcineurin-like	phosphoesterase	superfamily	domain
TFIIB	PF00382.19	gi|408404927|ref|YP_006862910.1|	-	2.2e-27	94.9	2.7	7.7e-14	51.5	0.2	2.2	2	0	0	2	2	2	2	Transcription	factor	TFIIB	repeat
TF_Zn_Ribbon	PF08271.12	gi|408404927|ref|YP_006862910.1|	-	0.0011	18.4	0.2	0.002	17.6	0.2	1.5	1	0	0	1	1	1	1	TFIIB	zinc-binding
GerE	PF00196.19	gi|408404927|ref|YP_006862910.1|	-	0.018	14.6	0.1	1.6	8.3	0.0	2.8	3	0	0	3	3	3	0	Bacterial	regulatory	proteins,	luxR	family
HTH_Mga	PF08280.11	gi|408404927|ref|YP_006862910.1|	-	0.16	12.1	0.6	2	8.5	0.2	2.7	2	0	0	2	2	2	0	M	protein	trans-acting	positive	regulator	(MGA)	HTH	domain
Glyco_trans_2_3	PF13632.6	gi|408404928|ref|YP_006862911.1|	-	3.6e-13	49.9	1.6	1.1e-12	48.2	1.6	1.9	1	1	0	1	1	1	1	Glycosyl	transferase	family	group	2
Glyco_tranf_2_3	PF13641.6	gi|408404928|ref|YP_006862911.1|	-	1.5e-07	31.5	0.0	2.9e-07	30.6	0.0	1.5	1	1	0	1	1	1	1	Glycosyltransferase	like	family	2
Fringe	PF02434.16	gi|408404928|ref|YP_006862911.1|	-	0.0025	17.3	0.0	0.0042	16.5	0.0	1.3	1	0	0	1	1	1	1	Fringe-like
Lactamase_B_2	PF12706.7	gi|408404930|ref|YP_006862913.1|	-	9.4e-22	77.5	0.0	1.3e-09	37.8	0.0	2.1	2	0	0	2	2	2	2	Beta-lactamase	superfamily	domain
Lactamase_B	PF00753.27	gi|408404930|ref|YP_006862913.1|	-	9.8e-06	25.7	0.0	4.3e-05	23.6	0.0	2.0	2	0	0	2	2	2	1	Metallo-beta-lactamase	superfamily
Lactamase_B_4	PF13691.6	gi|408404930|ref|YP_006862913.1|	-	0.0029	17.2	0.0	0.0067	16.1	0.0	1.6	1	0	0	1	1	1	1	tRNase	Z	endonuclease
NAD_binding_10	PF13460.6	gi|408404930|ref|YP_006862913.1|	-	0.038	13.9	0.1	0.058	13.3	0.1	1.3	1	0	0	1	1	1	0	NAD(P)H-binding
Pribosyltran_N	PF13793.6	gi|408404931|ref|YP_006862914.1|	-	3.5e-29	101.1	0.2	1.8e-28	98.8	0.1	2.1	2	0	0	2	2	2	1	N-terminal	domain	of	ribose	phosphate	pyrophosphokinase
Pribosyl_synth	PF14572.6	gi|408404931|ref|YP_006862914.1|	-	1e-17	64.8	2.9	3.1e-17	63.2	0.2	2.4	2	1	0	2	2	2	1	Phosphoribosyl	synthetase-associated	domain
Pribosyltran	PF00156.27	gi|408404931|ref|YP_006862914.1|	-	2.5e-08	33.6	0.7	2.5e-08	33.6	0.7	1.9	3	0	0	3	3	3	1	Phosphoribosyl	transferase	domain
UPRTase	PF14681.6	gi|408404931|ref|YP_006862914.1|	-	2.8e-06	26.9	0.2	4e-06	26.4	0.2	1.3	1	0	0	1	1	1	1	Uracil	phosphoribosyltransferase
DUF3426	PF11906.8	gi|408404932|ref|YP_006862915.1|	-	4.6e-07	30.1	0.1	0.0068	16.6	0.0	2.5	1	1	1	2	2	2	2	Protein	of	unknown	function	(DUF3426)
Glucosaminidase	PF01832.20	gi|408404932|ref|YP_006862915.1|	-	0.017	15.6	0.1	0.044	14.3	0.1	1.9	1	1	0	1	1	1	0	Mannosyl-glycoprotein	endo-beta-N-acetylglucosaminidase
DUF309	PF03745.14	gi|408404933|ref|YP_006862916.1|	-	5.6e-17	61.2	0.0	9e-17	60.5	0.0	1.4	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF309)
Ins_allergen_rp	PF06757.13	gi|408404933|ref|YP_006862916.1|	-	0.098	12.6	0.0	0.19	11.6	0.0	1.5	1	0	0	1	1	1	0	Insect	allergen	related	repeat,	nitrile-specifier	detoxification
Cu-oxidase_3	PF07732.15	gi|408404934|ref|YP_006862917.1|	-	4.6e-27	94.4	4.5	6.9e-23	80.9	0.5	2.4	2	1	0	2	2	2	2	Multicopper	oxidase
Cu-oxidase_2	PF07731.14	gi|408404934|ref|YP_006862917.1|	-	8.3e-25	87.1	7.2	1.2e-12	47.7	0.3	3.1	2	1	0	2	2	2	2	Multicopper	oxidase
Cupredoxin_1	PF13473.6	gi|408404934|ref|YP_006862917.1|	-	7.1e-05	22.9	0.0	0.023	14.8	0.0	2.4	2	0	0	2	2	2	2	Cupredoxin-like	domain
CAT_RBD	PF03123.15	gi|408404934|ref|YP_006862917.1|	-	0.0027	17.6	0.0	0.0059	16.5	0.0	1.5	1	0	0	1	1	1	1	CAT	RNA	binding	domain
Zip	PF02535.22	gi|408404935|ref|YP_006862918.1|	-	3.4e-05	23.2	17.3	3.4e-05	23.2	17.3	2.6	2	1	0	2	2	2	2	ZIP	Zinc	transporter
TraO	PF10626.9	gi|408404935|ref|YP_006862918.1|	-	0.14	11.9	0.0	0.22	11.3	0.0	1.3	1	0	0	1	1	1	0	Conjugative	transposon	protein	TraO
VAPB_antitox	PF02697.14	gi|408404936|ref|YP_006862919.1|	-	0.028	15.2	0.1	0.13	13.0	0.1	1.8	1	1	0	1	1	1	0	Putative	antitoxin
CE2_N	PF17996.1	gi|408404937|ref|YP_006862920.1|	-	0.053	13.5	0.0	0.1	12.6	0.0	1.4	1	0	0	1	1	1	0	Carbohydrate	esterase	2	N-terminal
zinc_ribbon_4	PF13717.6	gi|408404939|ref|YP_006862922.1|	-	0.0073	16.2	1.4	1.2	9.2	0.2	2.2	2	0	0	2	2	2	2	zinc-ribbon	domain
MCR	PF18509.1	gi|408404939|ref|YP_006862922.1|	-	0.011	15.3	0.2	0.021	14.4	0.1	1.5	2	0	0	2	2	2	0	Magnetochrome	domain
UPF0547	PF10571.9	gi|408404939|ref|YP_006862922.1|	-	0.026	14.6	7.5	0.74	10.0	1.4	2.3	2	0	0	2	2	2	0	Uncharacterised	protein	family	UPF0547
zinc_ribbon_5	PF13719.6	gi|408404939|ref|YP_006862922.1|	-	0.036	13.8	1.0	1.4	8.8	0.0	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
TFIIS_C	PF01096.18	gi|408404939|ref|YP_006862922.1|	-	0.16	11.8	3.8	2	8.3	0.9	2.2	2	0	0	2	2	2	0	Transcription	factor	S-II	(TFIIS)
PhnA_Zn_Ribbon	PF08274.12	gi|408404939|ref|YP_006862922.1|	-	0.72	9.8	5.2	6.8	6.7	1.1	2.3	2	0	0	2	2	2	0	PhnA	Zinc-Ribbon
Cu-oxidase_3	PF07732.15	gi|408404940|ref|YP_006862923.1|	-	3.4e-11	43.2	0.9	8.3e-11	41.9	0.9	1.7	1	1	0	1	1	1	1	Multicopper	oxidase
Cu-oxidase_2	PF07731.14	gi|408404940|ref|YP_006862923.1|	-	1.3e-09	37.9	2.9	0.018	14.8	0.3	3.2	3	0	0	3	3	3	3	Multicopper	oxidase
Cupredoxin_1	PF13473.6	gi|408404940|ref|YP_006862923.1|	-	7e-05	22.9	0.0	0.00018	21.6	0.0	1.6	1	0	0	1	1	1	1	Cupredoxin-like	domain
Cementoin	PF10511.9	gi|408404941|ref|YP_006862924.1|	-	0.077	13.3	0.2	0.13	12.6	0.2	1.3	1	0	0	1	1	1	0	Trappin	protein	transglutaminase	binding	domain
HTH_45	PF14947.6	gi|408404942|ref|YP_006862925.1|	-	9.2e-24	83.2	1.1	1e-23	83.1	1.1	1.0	1	0	0	1	1	1	1	Winged	helix-turn-helix
DUF4364	PF14277.6	gi|408404942|ref|YP_006862925.1|	-	6.2e-06	26.1	0.3	6.8e-06	25.9	0.3	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4364)
ANAPC2	PF08672.11	gi|408404942|ref|YP_006862925.1|	-	0.019	15.4	0.0	0.034	14.6	0.0	1.5	1	0	0	1	1	1	0	Anaphase	promoting	complex	(APC)	subunit	2
HTH_27	PF13463.6	gi|408404942|ref|YP_006862925.1|	-	0.02	15.3	0.0	0.025	15.1	0.0	1.2	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
DUF2067	PF09840.9	gi|408404942|ref|YP_006862925.1|	-	0.021	14.4	0.1	0.026	14.1	0.1	1.1	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	archaea	(DUF2067)
TrmB	PF01978.19	gi|408404942|ref|YP_006862925.1|	-	0.04	13.8	0.1	0.054	13.4	0.1	1.2	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
DUF4423	PF14394.6	gi|408404942|ref|YP_006862925.1|	-	0.16	11.7	0.1	0.19	11.5	0.1	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4423)
PKD	PF00801.20	gi|408404943|ref|YP_006862926.1|	-	0.00034	20.4	0.0	0.00058	19.7	0.0	1.4	1	0	0	1	1	1	1	PKD	domain
SprB	PF13573.6	gi|408404943|ref|YP_006862926.1|	-	0.055	13.3	0.1	0.11	12.3	0.1	1.5	1	0	0	1	1	1	0	SprB	repeat
GTP_EFTU_D2	PF03144.25	gi|408404944|ref|YP_006862927.1|	-	1.6e-10	41.2	0.9	4.3e-10	39.9	0.3	2.0	2	0	0	2	2	2	1	Elongation	factor	Tu	domain	2
GTP_EFTU_D4	PF14578.6	gi|408404944|ref|YP_006862927.1|	-	0.031	14.2	0.6	0.11	12.4	0.6	1.9	1	0	0	1	1	1	0	Elongation	factor	Tu	domain	4
DUF99	PF01949.16	gi|408404945|ref|YP_006862928.1|	-	6.4e-62	208.2	0.0	7.2e-62	208.0	0.0	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF99
OmpA	PF00691.20	gi|408404945|ref|YP_006862928.1|	-	0.17	12.3	0.1	0.5	10.8	0.0	1.9	2	0	0	2	2	2	0	OmpA	family
Polyketide_cyc	PF03364.20	gi|408404946|ref|YP_006862929.1|	-	7.2e-06	26.2	0.0	8.7e-06	26.0	0.0	1.1	1	0	0	1	1	1	1	Polyketide	cyclase	/	dehydrase	and	lipid	transport
Polyketide_cyc2	PF10604.9	gi|408404946|ref|YP_006862929.1|	-	0.0023	18.2	0.0	0.0043	17.3	0.0	1.5	1	1	0	1	1	1	1	Polyketide	cyclase	/	dehydrase	and	lipid	transport
Fe-ADH_2	PF13685.6	gi|408404947|ref|YP_006862930.1|	-	1.3e-63	215.0	0.5	1.7e-63	214.6	0.5	1.1	1	0	0	1	1	1	1	Iron-containing	alcohol	dehydrogenase
Fe-ADH	PF00465.19	gi|408404947|ref|YP_006862930.1|	-	3.1e-21	75.6	1.9	2.1e-20	72.9	1.9	1.9	1	1	0	1	1	1	1	Iron-containing	alcohol	dehydrogenase
DHQ_synthase	PF01761.20	gi|408404947|ref|YP_006862930.1|	-	1.1e-06	28.0	0.5	0.0003	20.1	0.0	3.3	3	1	0	3	3	3	2	3-dehydroquinate	synthase
AIRC	PF00731.20	gi|408404947|ref|YP_006862930.1|	-	0.0014	18.2	0.8	0.003	17.1	0.1	2.0	2	0	0	2	2	2	1	AIR	carboxylase
UPF0261	PF06792.11	gi|408404947|ref|YP_006862930.1|	-	0.054	12.4	0.1	0.078	11.9	0.1	1.2	1	0	0	1	1	1	0	Uncharacterised	protein	family	(UPF0261)
TRAM	PF01938.20	gi|408404948|ref|YP_006862931.1|	-	5.1e-13	48.8	1.5	6.6e-13	48.4	1.5	1.2	1	0	0	1	1	1	1	TRAM	domain
KH_7	PF17214.3	gi|408404949|ref|YP_006862932.1|	-	6e-23	80.6	0.2	5.4e-21	74.3	0.1	3.1	2	0	0	2	2	2	1	KH	domain
Beta-Casp	PF10996.8	gi|408404949|ref|YP_006862932.1|	-	1.2e-16	60.9	0.0	8.3e-16	58.3	0.0	2.4	3	0	0	3	3	3	1	Beta-Casp	domain
Lactamase_B	PF00753.27	gi|408404949|ref|YP_006862932.1|	-	9e-13	48.7	0.0	2.1e-08	34.4	0.0	2.4	2	0	0	2	2	2	2	Metallo-beta-lactamase	superfamily
Lactamase_B_6	PF16661.5	gi|408404949|ref|YP_006862932.1|	-	1.3e-11	44.3	0.0	4e-11	42.7	0.0	1.7	2	0	0	2	2	2	1	Metallo-beta-lactamase	superfamily	domain
RMMBL	PF07521.12	gi|408404949|ref|YP_006862932.1|	-	2e-11	43.6	0.0	4.7e-11	42.5	0.0	1.6	1	0	0	1	1	1	1	Zn-dependent	metallo-hydrolase	RNA	specificity	domain
Lactamase_B_2	PF12706.7	gi|408404949|ref|YP_006862932.1|	-	2.6e-10	40.2	0.0	1.2e-09	38.0	0.0	1.9	2	0	0	2	2	2	1	Beta-lactamase	superfamily	domain
Lactamase_B_3	PF13483.6	gi|408404949|ref|YP_006862932.1|	-	0.00017	21.5	0.0	0.0021	18.0	0.0	2.4	2	1	0	2	2	2	1	Beta-lactamase	superfamily	domain
SepF	PF04472.12	gi|408404950|ref|YP_006862933.1|	-	1.2e-13	51.1	0.2	1.3e-13	50.9	0.2	1.0	1	0	0	1	1	1	1	Cell	division	protein	SepF
Herpes_IE68	PF02479.16	gi|408404950|ref|YP_006862933.1|	-	0.18	11.4	0.0	0.21	11.2	0.0	1.1	1	0	0	1	1	1	0	Herpesvirus	immediate	early	protein
NFACT-R_2	PF18297.1	gi|408404951|ref|YP_006862934.1|	-	5.1e-22	78.0	0.0	9.2e-22	77.2	0.0	1.4	1	0	0	1	1	1	1	NFACT	protein	RNA	binding	domain
ThiI	PF02568.14	gi|408404951|ref|YP_006862934.1|	-	7.6e-06	25.6	0.0	1.2e-05	25.0	0.0	1.3	1	0	0	1	1	1	1	Thiamine	biosynthesis	protein	(ThiI)
NFACT-R_1	PF05670.13	gi|408404951|ref|YP_006862934.1|	-	1.3e-05	25.8	0.0	2.7e-05	24.8	0.0	1.4	1	0	0	1	1	1	1	NFACT	protein	RNA	binding	domain
tRNA_Me_trans	PF03054.16	gi|408404951|ref|YP_006862934.1|	-	0.00014	20.8	0.0	0.00022	20.2	0.0	1.3	1	0	0	1	1	1	1	tRNA	methyl	transferase
HTH_23	PF13384.6	gi|408404951|ref|YP_006862934.1|	-	0.098	12.5	0.0	0.22	11.3	0.0	1.5	1	0	0	1	1	1	0	Homeodomain-like	domain
tRNA_synthFbeta	PF17759.1	gi|408404953|ref|YP_006862936.1|	-	1.1e-40	139.3	0.0	1.6e-40	138.9	0.0	1.2	1	0	0	1	1	1	1	Phenylalanyl	tRNA	synthetase	beta	chain	CLM	domain
B5	PF03484.15	gi|408404953|ref|YP_006862936.1|	-	7.6e-16	58.2	0.2	5.9e-15	55.3	0.1	2.4	2	0	0	2	2	2	1	tRNA	synthetase	B5	domain
B3_4	PF03483.17	gi|408404953|ref|YP_006862936.1|	-	1.5e-11	44.3	0.0	2.9e-11	43.4	0.0	1.4	1	0	0	1	1	1	1	B3/4	domain
tRNA-synt_2d	PF01409.20	gi|408404953|ref|YP_006862936.1|	-	0.009	15.5	0.0	0.017	14.6	0.0	1.4	1	0	0	1	1	1	1	tRNA	synthetases	class	II	core	domain	(F)
tRNA-synt_2d	PF01409.20	gi|408404954|ref|YP_006862937.1|	-	4.3e-84	281.8	0.0	5.9e-84	281.4	0.0	1.2	1	0	0	1	1	1	1	tRNA	synthetases	class	II	core	domain	(F)
tRNA_synthFbeta	PF17759.1	gi|408404954|ref|YP_006862937.1|	-	2e-05	24.2	0.0	0.002	17.6	0.0	2.5	2	0	0	2	2	2	2	Phenylalanyl	tRNA	synthetase	beta	chain	CLM	domain
tRNA-synt_2	PF00152.20	gi|408404954|ref|YP_006862937.1|	-	0.00012	21.3	0.2	0.0023	17.1	0.0	2.6	3	0	0	3	3	3	1	tRNA	synthetases	class	II	(D,	K	and	N)
tRNA-synt_2b	PF00587.25	gi|408404954|ref|YP_006862937.1|	-	0.021	14.8	0.0	0.045	13.7	0.0	1.5	1	0	0	1	1	1	0	tRNA	synthetase	class	II	core	domain	(G,	H,	P,	S	and	T)
Clp_N	PF02861.20	gi|408404954|ref|YP_006862937.1|	-	0.11	12.7	0.2	0.26	11.4	0.2	1.6	1	0	0	1	1	1	0	Clp	amino	terminal	domain,	pathogenicity	island	component
tRNA-synt_1b	PF00579.25	gi|408404955|ref|YP_006862938.1|	-	6.1e-19	68.4	0.0	1.1e-18	67.6	0.0	1.4	1	1	0	1	1	1	1	tRNA	synthetases	class	I	(W	and	Y)
tRNA-synt_1f	PF01921.18	gi|408404955|ref|YP_006862938.1|	-	0.097	11.6	0.0	0.19	10.6	0.0	1.5	1	1	0	1	1	1	0	tRNA	synthetases	class	I	(K)
PTPS	PF01242.19	gi|408404955|ref|YP_006862938.1|	-	0.13	12.2	0.0	0.45	10.5	0.0	1.8	2	0	0	2	2	2	0	6-pyruvoyl	tetrahydropterin	synthase
CTP_transf_like	PF01467.26	gi|408404958|ref|YP_006862941.1|	-	1.5e-14	54.4	0.0	2.8e-14	53.5	0.0	1.4	1	1	0	1	1	1	1	Cytidylyltransferase-like
FAD_syn	PF06574.12	gi|408404958|ref|YP_006862941.1|	-	0.002	18.0	0.2	0.0048	16.8	0.1	1.8	2	0	0	2	2	2	1	FAD	synthetase
Pantoate_ligase	PF02569.15	gi|408404958|ref|YP_006862941.1|	-	0.14	11.3	0.1	0.9	8.7	0.0	1.9	2	0	0	2	2	2	0	Pantoate-beta-alanine	ligase
Fer4	PF00037.27	gi|408404959|ref|YP_006862942.1|	-	4.5e-09	35.7	17.4	0.00011	21.8	2.8	2.3	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_7	PF12838.7	gi|408404959|ref|YP_006862942.1|	-	1.8e-06	28.4	9.0	1.1e-05	25.9	9.9	1.9	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_9	PF13187.6	gi|408404959|ref|YP_006862942.1|	-	9.8e-06	25.6	8.1	1.8e-05	24.8	8.1	1.4	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
ETF_QO	PF05187.13	gi|408404959|ref|YP_006862942.1|	-	1.8e-05	24.8	1.0	3.3e-05	23.9	1.0	1.4	1	0	0	1	1	1	1	Electron	transfer	flavoprotein-ubiquinone	oxidoreductase,	4Fe-4S
Fer4_10	PF13237.6	gi|408404959|ref|YP_006862942.1|	-	3.1e-05	24.0	9.4	6.8e-05	22.9	9.4	1.6	1	1	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_21	PF14697.6	gi|408404959|ref|YP_006862942.1|	-	0.00018	21.6	8.9	0.00028	20.9	8.9	1.3	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Tenui_PVC2	PF06656.11	gi|408404959|ref|YP_006862942.1|	-	0.00073	17.6	0.4	0.0016	16.5	0.2	1.5	2	0	0	2	2	2	1	Tenuivirus	PVC2	protein
Fer4_6	PF12837.7	gi|408404959|ref|YP_006862942.1|	-	0.0048	16.9	13.5	0.25	11.5	4.1	2.3	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_8	PF13183.6	gi|408404959|ref|YP_006862942.1|	-	0.006	17.0	7.4	0.017	15.5	7.0	1.9	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_3	PF12798.7	gi|408404959|ref|YP_006862942.1|	-	0.012	16.5	15.6	0.18	12.8	6.0	2.3	2	0	0	2	2	2	0	4Fe-4S	binding	domain
DBINO	PF13892.6	gi|408404959|ref|YP_006862942.1|	-	0.016	15.6	0.3	0.025	14.9	0.3	1.2	1	0	0	1	1	1	0	DNA-binding	domain
Fer4_17	PF13534.6	gi|408404959|ref|YP_006862942.1|	-	0.06	13.9	5.3	1.5	9.4	1.0	2.5	2	0	0	2	2	2	0	4Fe-4S	dicluster	domain
Fer4_16	PF13484.6	gi|408404959|ref|YP_006862942.1|	-	0.069	14.1	10.6	3.1	8.8	3.6	2.6	1	1	1	2	2	2	0	4Fe-4S	double	cluster	binding	domain
Fer4_13	PF13370.6	gi|408404959|ref|YP_006862942.1|	-	0.46	11.1	12.0	2.3	8.8	1.4	2.8	3	0	0	3	3	2	0	4Fe-4S	single	cluster	domain	of	Ferredoxin	I
Fer4_2	PF12797.7	gi|408404959|ref|YP_006862942.1|	-	0.61	10.3	12.7	3.6	7.9	3.3	2.4	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_4	PF12800.7	gi|408404959|ref|YP_006862942.1|	-	1.9	9.2	12.2	0.73	10.5	3.2	2.4	2	0	0	2	2	2	0	4Fe-4S	binding	domain
zf-C2H2_6	PF13912.6	gi|408404960|ref|YP_006862943.1|	-	1.5e-06	28.1	0.3	2.3e-06	27.4	0.2	1.4	2	0	0	2	2	2	1	C2H2-type	zinc	finger
zf_C2H2_ZHX	PF18387.1	gi|408404960|ref|YP_006862943.1|	-	3.4e-06	26.6	0.0	3.7e-06	26.5	0.0	1.0	1	0	0	1	1	1	1	Zinc-fingers	and	homeoboxes	C2H2	finger	domain
zf-C2H2	PF00096.26	gi|408404960|ref|YP_006862943.1|	-	4e-05	23.8	0.8	5e-05	23.5	0.8	1.2	1	0	0	1	1	1	1	Zinc	finger,	C2H2	type
zf_ZIC	PF18366.1	gi|408404960|ref|YP_006862943.1|	-	8.8e-05	22.5	0.2	0.00011	22.3	0.2	1.2	1	0	0	1	1	1	1	Zic	proteins	zinc	finger	domain
zf-C2H2_4	PF13894.6	gi|408404960|ref|YP_006862943.1|	-	0.0065	17.2	0.2	0.0083	16.9	0.2	1.3	1	0	0	1	1	1	1	C2H2-type	zinc	finger
zf-C2H2_3rep	PF18868.1	gi|408404960|ref|YP_006862943.1|	-	0.011	16.4	0.1	0.011	16.3	0.1	1.0	1	0	0	1	1	1	0	Zinc	finger	C2H2-type,	3	repeats
zf-C2HC_2	PF13913.6	gi|408404960|ref|YP_006862943.1|	-	0.018	14.9	0.6	0.025	14.5	0.6	1.2	1	0	0	1	1	1	0	zinc-finger	of	a	C2HC-type
FYVE	PF01363.21	gi|408404960|ref|YP_006862943.1|	-	0.019	15.1	0.1	0.019	15.1	0.1	1.2	1	0	0	1	1	1	0	FYVE	zinc	finger
zf-C2H2_jaz	PF12171.8	gi|408404960|ref|YP_006862943.1|	-	0.027	14.8	0.1	0.032	14.5	0.1	1.2	1	0	0	1	1	1	0	Zinc-finger	double-stranded	RNA-binding
RAG1_imp_bd	PF12560.8	gi|408404960|ref|YP_006862943.1|	-	0.027	14.0	0.1	0.027	14.0	0.1	1.0	1	0	0	1	1	1	0	RAG1	importin	binding
zf-H2C2_2	PF13465.6	gi|408404960|ref|YP_006862943.1|	-	0.06	13.8	0.4	0.45	11.0	0.0	2.0	2	0	0	2	2	2	0	Zinc-finger	double	domain
zf-met	PF12874.7	gi|408404960|ref|YP_006862943.1|	-	0.11	12.9	0.1	0.19	12.2	0.1	1.4	1	0	0	1	1	1	0	Zinc-finger	of	C2H2	type
DUF629	PF04780.12	gi|408404960|ref|YP_006862943.1|	-	0.21	10.1	0.1	0.22	10.0	0.1	1.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF629)
PKD	PF00801.20	gi|408404962|ref|YP_006862945.1|	-	0.012	15.5	0.1	0.019	14.8	0.1	1.3	1	0	0	1	1	1	0	PKD	domain
YtkA	PF13115.6	gi|408404962|ref|YP_006862945.1|	-	0.023	15.3	0.0	0.06	14.0	0.0	1.7	1	1	0	1	1	1	0	YtkA-like
Invasin_D3	PF09134.10	gi|408404962|ref|YP_006862945.1|	-	0.023	15.0	0.0	0.032	14.5	0.0	1.2	1	0	0	1	1	1	0	Invasin,	domain	3
DUF1573	PF07610.11	gi|408404962|ref|YP_006862945.1|	-	0.065	13.3	0.0	0.12	12.4	0.0	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1573)
Ig_2	PF13895.6	gi|408404962|ref|YP_006862945.1|	-	0.1	13.0	0.0	0.21	12.0	0.0	1.5	2	0	0	2	2	2	0	Immunoglobulin	domain
zf-C2H2_2	PF12756.7	gi|408404963|ref|YP_006862946.1|	-	0.0021	18.4	0.0	0.0022	18.3	0.0	1.1	1	0	0	1	1	1	1	C2H2	type	zinc-finger	(2	copies)
zf-C2H2	PF00096.26	gi|408404963|ref|YP_006862946.1|	-	0.02	15.3	0.5	0.029	14.8	0.5	1.3	1	0	0	1	1	1	0	Zinc	finger,	C2H2	type
zf-C2H2_4	PF13894.6	gi|408404963|ref|YP_006862946.1|	-	0.025	15.4	0.3	0.042	14.7	0.3	1.3	1	0	0	1	1	1	0	C2H2-type	zinc	finger
Rhodanese	PF00581.20	gi|408404967|ref|YP_006862950.1|	-	7.4e-38	129.3	0.1	2.4e-19	69.8	0.0	2.1	2	0	0	2	2	2	2	Rhodanese-like	domain
DUF442	PF04273.13	gi|408404967|ref|YP_006862950.1|	-	0.075	13.1	0.0	0.76	9.9	0.0	2.1	2	0	0	2	2	2	0	Putative	phosphatase	(DUF442)
NitrOD2	PF18550.1	gi|408404968|ref|YP_006862951.1|	-	0.0016	18.6	0.2	0.002	18.3	0.2	1.2	1	0	0	1	1	1	1	Nitrososphaera	output	domain	2
Baculo_E25	PF05274.11	gi|408404969|ref|YP_006862952.1|	-	0.046	13.5	0.2	0.069	13.0	0.1	1.3	1	1	0	1	1	1	0	Occlusion-derived	virus	envelope	protein	E25
MEDS	PF14417.6	gi|408404970|ref|YP_006862953.1|	-	0.14	11.9	0.0	0.17	11.7	0.0	1.2	1	0	0	1	1	1	0	MEDS:	MEthanogen/methylotroph,	DcmR	Sensory	domain
DNA_pol3_beta_3	PF02768.15	gi|408404972|ref|YP_006862955.1|	-	0.007	16.2	0.3	0.0073	16.1	0.3	1.0	1	0	0	1	1	1	1	DNA	polymerase	III	beta	subunit,	C-terminal	domain
NitrOD2	PF18550.1	gi|408404972|ref|YP_006862955.1|	-	0.017	15.3	0.2	0.017	15.3	0.2	1.1	1	0	0	1	1	1	0	Nitrososphaera	output	domain	2
Rieske	PF00355.26	gi|408404973|ref|YP_006862956.1|	-	9.7e-16	57.5	0.0	1.2e-15	57.2	0.0	1.2	1	0	0	1	1	1	1	Rieske	[2Fe-2S]	domain
Rieske_2	PF13806.6	gi|408404973|ref|YP_006862956.1|	-	7.4e-07	29.1	0.0	9e-07	28.8	0.0	1.1	1	0	0	1	1	1	1	Rieske-like	[2Fe-2S]	domain
Ferritin	PF00210.24	gi|408404974|ref|YP_006862957.1|	-	2e-23	82.9	0.0	2.3e-23	82.7	0.0	1.1	1	0	0	1	1	1	1	Ferritin-like	domain
COQ7	PF03232.13	gi|408404974|ref|YP_006862957.1|	-	0.01	15.6	0.0	0.026	14.3	0.0	1.6	2	0	0	2	2	2	0	Ubiquinone	biosynthesis	protein	COQ7
Ferritin_2	PF13668.6	gi|408404974|ref|YP_006862957.1|	-	0.046	13.9	0.0	0.081	13.1	0.0	1.4	1	0	0	1	1	1	0	Ferritin-like	domain
Glutaredoxin	PF00462.24	gi|408404976|ref|YP_006862959.1|	-	0.013	15.7	0.0	0.017	15.3	0.0	1.3	1	0	0	1	1	1	0	Glutaredoxin
NAD_kinase	PF01513.21	gi|408404977|ref|YP_006862960.1|	-	3.1e-27	95.5	2.0	3e-26	92.3	2.0	2.1	1	1	0	1	1	1	1	ATP-NAD	kinase
DAGK_cat	PF00781.24	gi|408404977|ref|YP_006862960.1|	-	0.005	16.4	0.0	0.0084	15.7	0.0	1.4	1	0	0	1	1	1	1	Diacylglycerol	kinase	catalytic	domain
PIN_6	PF17146.4	gi|408404978|ref|YP_006862961.1|	-	1.7e-17	63.7	0.1	2.4e-17	63.2	0.1	1.2	1	0	0	1	1	1	1	PIN	domain	of	ribonuclease
PIN	PF01850.21	gi|408404978|ref|YP_006862961.1|	-	0.00088	19.8	0.5	0.0013	19.2	0.5	1.4	1	1	0	1	1	1	1	PIN	domain
DUF4411	PF14367.6	gi|408404978|ref|YP_006862961.1|	-	0.0012	18.8	0.3	0.0021	18.0	0.2	1.4	1	1	0	1	1	1	1	Domain	of	unknown	function	(DUF4411)
NOB1_Zn_bind	PF08772.11	gi|408404978|ref|YP_006862961.1|	-	0.0013	18.9	2.1	0.0016	18.5	0.9	1.8	2	0	0	2	2	2	1	Nin	one	binding	(NOB1)	Zn-ribbon	like
DUF2597	PF10772.9	gi|408404978|ref|YP_006862961.1|	-	0.0044	17.1	0.1	0.0057	16.7	0.1	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF2597)
DUF35_N	PF12172.8	gi|408404978|ref|YP_006862961.1|	-	0.0063	16.4	0.4	0.01	15.7	0.4	1.3	1	0	0	1	1	1	1	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
DZR	PF12773.7	gi|408404978|ref|YP_006862961.1|	-	0.007	16.4	2.3	0.008	16.2	1.3	1.5	2	0	0	2	2	1	1	Double	zinc	ribbon
HypA	PF01155.19	gi|408404978|ref|YP_006862961.1|	-	0.022	14.8	0.0	0.043	13.8	0.0	1.5	1	0	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
zf-ribbon_3	PF13248.6	gi|408404978|ref|YP_006862961.1|	-	0.028	13.8	2.8	0.051	13.0	2.8	1.4	1	0	0	1	1	1	0	zinc-ribbon	domain
PIN_2	PF10130.9	gi|408404978|ref|YP_006862961.1|	-	0.034	14.4	0.0	0.046	13.9	0.0	1.3	1	0	0	1	1	1	0	PIN	domain
RecR	PF02132.15	gi|408404978|ref|YP_006862961.1|	-	0.041	13.5	0.2	0.12	12.0	0.2	1.8	1	1	0	1	1	1	0	RecR	protein
PIN_5	PF08745.11	gi|408404978|ref|YP_006862961.1|	-	0.066	12.6	1.7	0.27	10.6	0.3	2.4	2	1	1	3	3	3	0	PINc	domain	ribonuclease
zf-C3HC4_3	PF13920.6	gi|408404978|ref|YP_006862961.1|	-	0.083	12.8	0.8	0.14	12.1	0.8	1.3	1	0	0	1	1	1	0	Zinc	finger,	C3HC4	type	(RING	finger)
NRDD	PF13597.6	gi|408404978|ref|YP_006862961.1|	-	0.088	11.6	0.4	0.12	11.2	0.4	1.1	1	0	0	1	1	1	0	Anaerobic	ribonucleoside-triphosphate	reductase
zinc_ribbon_2	PF13240.6	gi|408404978|ref|YP_006862961.1|	-	0.13	12.0	4.5	0.29	10.9	4.5	1.6	1	0	0	1	1	1	0	zinc-ribbon	domain
Zn-ribbon_8	PF09723.10	gi|408404978|ref|YP_006862961.1|	-	0.21	11.7	3.2	0.71	10.0	3.2	1.9	1	1	0	1	1	1	0	Zinc	ribbon	domain
Nudix_N_2	PF14803.6	gi|408404978|ref|YP_006862961.1|	-	0.65	10.0	3.4	19	5.3	0.6	2.4	2	0	0	2	2	2	0	Nudix	N-terminal
Cys_rich_KTR	PF14205.6	gi|408404978|ref|YP_006862961.1|	-	1.3	8.9	3.3	0.53	10.1	0.4	1.9	2	0	0	2	2	2	0	Cysteine-rich	KTR
ERCC4	PF02732.15	gi|408404979|ref|YP_006862962.1|	-	9.3e-23	81.1	0.0	1.4e-22	80.6	0.0	1.3	1	0	0	1	1	1	1	ERCC4	domain
HHH_5	PF14520.6	gi|408404979|ref|YP_006862962.1|	-	3.4e-11	43.6	0.5	4e-10	40.1	0.0	2.7	3	1	0	3	3	3	1	Helix-hairpin-helix	domain
HHH_2	PF12826.7	gi|408404979|ref|YP_006862962.1|	-	6.9e-07	29.3	0.0	2e-06	27.8	0.0	1.8	2	0	0	2	2	2	1	Helix-hairpin-helix	motif
HHH	PF00633.23	gi|408404979|ref|YP_006862962.1|	-	2.1e-06	27.3	0.8	0.07	13.0	0.0	3.3	3	0	0	3	3	3	2	Helix-hairpin-helix	motif
HHH_3	PF12836.7	gi|408404979|ref|YP_006862962.1|	-	0.0032	17.7	0.0	4.3	7.7	0.0	2.6	2	0	0	2	2	2	2	Helix-hairpin-helix	motif
IMS_HHH	PF11798.8	gi|408404979|ref|YP_006862962.1|	-	0.0044	17.3	0.0	0.039	14.3	0.0	2.4	2	0	0	2	2	2	1	IMS	family	HHH	motif
5_3_exonuc	PF01367.20	gi|408404979|ref|YP_006862962.1|	-	0.015	15.9	0.0	0.13	12.9	0.0	2.3	2	0	0	2	2	2	0	5'-3'	exonuclease,	C-terminal	SAM	fold
Transposase_20	PF02371.16	gi|408404979|ref|YP_006862962.1|	-	0.047	14.0	0.0	0.38	11.1	0.0	2.1	1	1	1	2	2	2	0	Transposase	IS116/IS110/IS902	family
HHH_8	PF14716.6	gi|408404979|ref|YP_006862962.1|	-	0.098	13.0	0.0	2.4	8.6	0.0	2.5	1	1	1	2	2	2	0	Helix-hairpin-helix	domain
Cdd1	PF11731.8	gi|408404979|ref|YP_006862962.1|	-	0.1	12.8	0.0	24	5.3	0.0	2.5	2	0	0	2	2	2	0	Pathogenicity	locus
Prefoldin_2	PF01920.20	gi|408404980|ref|YP_006862963.1|	-	9.3e-22	77.0	16.2	1e-21	76.8	16.2	1.0	1	0	0	1	1	1	1	Prefoldin	subunit
Cortex-I_coil	PF09304.10	gi|408404980|ref|YP_006862963.1|	-	0.0016	18.6	5.6	0.13	12.4	1.1	2.2	2	0	0	2	2	2	2	Cortexillin	I,	coiled	coil
DUF4657	PF15552.6	gi|408404980|ref|YP_006862963.1|	-	0.082	12.5	4.0	0.1	12.1	4.0	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4657)
KIP1	PF07765.12	gi|408404980|ref|YP_006862963.1|	-	1	9.5	6.0	2.5	8.3	0.0	2.8	2	1	0	2	2	2	0	KIP1-like	protein
Nup88	PF10168.9	gi|408404980|ref|YP_006862963.1|	-	1.6	6.5	11.0	1.8	6.3	11.0	1.0	1	0	0	1	1	1	0	Nuclear	pore	component
DUF724	PF05266.14	gi|408404980|ref|YP_006862963.1|	-	1.8	8.3	9.2	2.8	7.7	9.2	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF724)
XhlA	PF10779.9	gi|408404980|ref|YP_006862963.1|	-	3.8	7.8	12.8	0.23	11.7	5.9	2.1	2	1	0	2	2	2	0	Haemolysin	XhlA
DUF919	PF06034.11	gi|408404980|ref|YP_006862963.1|	-	7.6	6.5	11.2	0.087	12.7	1.7	2.4	3	0	0	3	3	3	0	Nucleopolyhedrovirus	protein	of	unknown	function	(DUF919)
DUF3530	PF12048.8	gi|408404981|ref|YP_006862964.1|	-	0.38	10.1	10.7	0.12	11.8	3.0	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3530)
DUF4307	PF14155.6	gi|408404981|ref|YP_006862964.1|	-	0.69	9.8	4.9	0.17	11.7	1.5	1.8	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4307)
4_1_CTD	PF05902.13	gi|408404981|ref|YP_006862964.1|	-	7.2	6.7	13.8	1.6	8.9	3.0	2.2	2	0	0	2	2	2	0	4.1	protein	C-terminal	domain	(CTD)
Pcc1	PF09341.10	gi|408404982|ref|YP_006862965.1|	-	1.6e-09	37.8	0.1	1.8e-09	37.6	0.1	1.1	1	0	0	1	1	1	1	Transcription	factor	Pcc1
Ribosomal_L37ae	PF01780.19	gi|408404983|ref|YP_006862966.1|	-	1e-16	60.7	0.3	1.2e-16	60.5	0.3	1.0	1	0	0	1	1	1	1	Ribosomal	L37ae	protein	family
Zn_Tnp_IS1595	PF12760.7	gi|408404983|ref|YP_006862966.1|	-	0.00015	21.6	3.3	0.00022	21.2	3.3	1.2	1	0	0	1	1	1	1	Transposase	zinc-ribbon	domain
zf-ribbon_3	PF13248.6	gi|408404983|ref|YP_006862966.1|	-	0.002	17.5	2.6	0.096	12.1	0.1	2.3	2	0	0	2	2	2	1	zinc-ribbon	domain
C1_1	PF00130.22	gi|408404983|ref|YP_006862966.1|	-	0.0021	17.9	0.9	0.003	17.4	0.9	1.1	1	0	0	1	1	1	1	Phorbol	esters/diacylglycerol	binding	domain	(C1	domain)
zf-RanBP	PF00641.18	gi|408404983|ref|YP_006862966.1|	-	0.012	14.9	3.5	0.075	12.4	0.5	2.1	2	0	0	2	2	2	0	Zn-finger	in	Ran	binding	protein	and	others
zf-tcix	PF14952.6	gi|408404983|ref|YP_006862966.1|	-	0.014	15.0	3.2	0.84	9.3	0.6	2.3	2	0	0	2	2	2	0	Putative	treble-clef,	zinc-finger,	Zn-binding
OrfB_Zn_ribbon	PF07282.11	gi|408404983|ref|YP_006862966.1|	-	0.014	15.3	0.8	0.02	14.8	0.8	1.4	1	0	0	1	1	1	0	Putative	transposase	DNA-binding	domain
Zn-ribbon_8	PF09723.10	gi|408404983|ref|YP_006862966.1|	-	0.015	15.4	0.8	0.37	11.0	0.1	2.3	2	0	0	2	2	2	0	Zinc	ribbon	domain
zinc_ribbon_10	PF10058.9	gi|408404983|ref|YP_006862966.1|	-	0.085	12.6	1.4	3.2	7.5	0.2	2.2	2	0	0	2	2	2	0	Predicted	integral	membrane	zinc-ribbon	metal-binding	protein
TackOD1	PF18551.1	gi|408404983|ref|YP_006862966.1|	-	0.09	12.4	1.2	0.29	10.8	1.0	1.7	1	1	1	2	2	2	0	Thaumarchaeal	output	domain	1
DUF35_N	PF12172.8	gi|408404983|ref|YP_006862966.1|	-	0.093	12.6	2.7	0.2	11.5	0.4	2.0	2	0	0	2	2	2	0	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
Rubredoxin	PF00301.20	gi|408404983|ref|YP_006862966.1|	-	0.1	12.6	1.1	4.7	7.3	0.3	2.2	2	0	0	2	2	2	0	Rubredoxin
zinc_ribbon_5	PF13719.6	gi|408404983|ref|YP_006862966.1|	-	0.11	12.3	1.2	12	5.7	0.1	2.4	2	0	0	2	2	2	0	zinc-ribbon	domain
DNA_ligase_ZBD	PF03119.16	gi|408404983|ref|YP_006862966.1|	-	0.12	12.4	3.3	1.8	8.6	0.7	2.5	2	0	0	2	2	2	0	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
zinc_ribbon_2	PF13240.6	gi|408404983|ref|YP_006862966.1|	-	0.16	11.8	4.9	3.3	7.6	0.1	2.3	2	0	0	2	2	2	0	zinc-ribbon	domain
zf-C4_Topoisom	PF01396.19	gi|408404983|ref|YP_006862966.1|	-	0.19	11.6	3.9	5.9	6.8	0.1	2.7	3	0	0	3	3	3	0	Topoisomerase	DNA	binding	C4	zinc	finger
zf-NADH-PPase	PF09297.11	gi|408404983|ref|YP_006862966.1|	-	0.24	11.1	4.0	0.4	10.4	0.2	2.2	2	0	0	2	2	2	0	NADH	pyrophosphatase	zinc	ribbon	domain
zf_UBZ	PF18439.1	gi|408404983|ref|YP_006862966.1|	-	0.35	10.5	1.6	1.1	8.9	0.0	2.1	2	0	0	2	2	2	0	Ubiquitin-Binding	Zinc	Finger
zf-ACC	PF17848.1	gi|408404983|ref|YP_006862966.1|	-	0.49	10.5	5.4	4.3	7.5	0.1	2.6	3	0	0	3	3	2	0	Acetyl-coA	carboxylase	zinc	finger	domain
zf-C2H2_3	PF13878.6	gi|408404983|ref|YP_006862966.1|	-	0.67	9.8	5.0	3.9	7.4	0.0	2.7	1	1	2	3	3	3	0	zinc-finger	of	acetyl-transferase	ESCO
zinc_ribbon_4	PF13717.6	gi|408404983|ref|YP_006862966.1|	-	1	9.3	6.4	8.2	6.4	1.2	2.7	2	1	0	2	2	2	0	zinc-ribbon	domain
DUF4379	PF14311.6	gi|408404983|ref|YP_006862966.1|	-	1.7	9.1	5.2	16	5.9	0.1	2.3	2	1	0	2	2	2	0	Probable	Zinc-ribbon	domain
zf_C2H2_10	PF18414.1	gi|408404983|ref|YP_006862966.1|	-	5.8	6.5	7.0	1.5	8.4	1.7	2.2	2	1	0	2	2	2	0	C2H2	type	zinc-finger
Rubredoxin_2	PF18073.1	gi|408404983|ref|YP_006862966.1|	-	6.6	6.6	12.1	5.2	6.9	1.7	2.6	3	0	0	3	3	3	0	Rubredoxin	metal	binding	domain
RNase_PH	PF01138.21	gi|408404984|ref|YP_006862967.1|	-	2.1e-25	89.8	0.0	6.2e-25	88.2	0.0	1.7	2	0	0	2	2	2	1	3'	exoribonuclease	family,	domain	1
RNase_PH_C	PF03725.15	gi|408404984|ref|YP_006862967.1|	-	6.3e-12	45.4	0.0	1.2e-11	44.5	0.0	1.4	1	0	0	1	1	1	1	3'	exoribonuclease	family,	domain	2
RNase_PH	PF01138.21	gi|408404985|ref|YP_006862968.1|	-	1.2e-33	116.5	0.0	1.5e-33	116.1	0.0	1.2	1	0	0	1	1	1	1	3'	exoribonuclease	family,	domain	1
RNase_PH_C	PF03725.15	gi|408404985|ref|YP_006862968.1|	-	2.5e-15	56.3	0.2	1.7e-14	53.6	0.1	2.3	2	0	0	2	2	2	1	3'	exoribonuclease	family,	domain	2
KH_1	PF00013.29	gi|408404986|ref|YP_006862969.1|	-	1.1e-09	37.9	2.6	2.6e-09	36.8	2.6	1.6	1	0	0	1	1	1	1	KH	domain
KH_2	PF07650.17	gi|408404986|ref|YP_006862969.1|	-	0.00012	21.8	1.5	0.00036	20.3	1.4	1.8	1	1	0	1	1	1	1	KH	domain
KH_6	PF15985.5	gi|408404986|ref|YP_006862969.1|	-	0.023	15.1	0.0	0.038	14.3	0.0	1.4	1	0	0	1	1	1	0	KH	domain
SBDS	PF01172.18	gi|408404987|ref|YP_006862970.1|	-	5.5e-20	71.2	0.0	1e-19	70.4	0.0	1.5	1	0	0	1	1	1	1	Shwachman-Bodian-Diamond	syndrome	(SBDS)	protein
SBDS_C	PF09377.10	gi|408404987|ref|YP_006862970.1|	-	3.6e-16	59.2	0.0	6e-16	58.5	0.0	1.4	1	0	0	1	1	1	1	SBDS	protein	C-terminal	domain
HD_assoc	PF13286.6	gi|408404987|ref|YP_006862970.1|	-	0.04	14.5	0.9	0.1	13.2	0.2	2.0	2	1	0	2	2	2	0	Phosphohydrolase-associated	domain
Tugs	PF17840.1	gi|408404987|ref|YP_006862970.1|	-	0.11	12.7	0.1	0.47	10.7	0.0	2.0	2	0	0	2	2	2	0	Tethering	Ubl4a	to	BAGS	domain
RNA_pol_A_bac	PF01000.26	gi|408404989|ref|YP_006862972.1|	-	2.1e-25	89.3	0.0	5.4e-25	87.9	0.0	1.6	2	0	0	2	2	2	1	RNA	polymerase	Rpb3/RpoA	insert	domain
RNA_pol_L	PF01193.24	gi|408404989|ref|YP_006862972.1|	-	7.7e-06	25.3	0.0	8.2e-06	25.2	0.0	1.2	1	0	0	1	1	1	1	RNA	polymerase	Rpb3/Rpb11	dimerisation	domain
Ribosomal_L18	PF17135.4	gi|408404990|ref|YP_006862973.1|	-	4.8e-11	42.4	0.0	5.5e-11	42.2	0.0	1.1	1	0	0	1	1	1	1	Ribosomal	protein	60S	L18	and	50S	L18e
Ribosomal_L27A	PF00828.19	gi|408404990|ref|YP_006862973.1|	-	2.1e-07	31.7	0.6	3.7e-07	30.9	0.6	1.5	1	1	0	1	1	1	1	Ribosomal	proteins	50S-L15,	50S-L18e,	60S-L27A
Ribosomal_L1	PF00687.21	gi|408404990|ref|YP_006862973.1|	-	0.0081	15.9	0.0	0.0094	15.7	0.0	1.2	1	0	0	1	1	1	1	Ribosomal	protein	L1p/L10e	family
NosL	PF05573.12	gi|408404990|ref|YP_006862973.1|	-	0.13	12.6	0.0	0.15	12.4	0.0	1.2	1	0	0	1	1	1	0	NosL
Ribosomal_L13	PF00572.18	gi|408404991|ref|YP_006862974.1|	-	2.3e-12	47.2	0.3	2.1e-10	40.9	0.3	2.1	1	1	0	1	1	1	1	Ribosomal	protein	L13
Ribosomal_S9	PF00380.19	gi|408404992|ref|YP_006862975.1|	-	2.6e-28	99.0	0.4	3.1e-28	98.7	0.4	1.1	1	0	0	1	1	1	1	Ribosomal	protein	S9/S16
HTH_45	PF14947.6	gi|408404993|ref|YP_006862976.1|	-	4.6e-20	71.4	1.7	5.3e-20	71.2	1.7	1.0	1	0	0	1	1	1	1	Winged	helix-turn-helix
DUF4364	PF14277.6	gi|408404993|ref|YP_006862976.1|	-	0.0055	16.5	0.3	0.0063	16.3	0.3	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4364)
Guanylate_cyc	PF00211.20	gi|408404994|ref|YP_006862977.1|	-	4.9e-17	62.1	0.0	7.6e-17	61.5	0.0	1.2	1	0	0	1	1	1	1	Adenylate	and	Guanylate	cyclase	catalytic	domain
EF_assoc_2	PF08356.12	gi|408404994|ref|YP_006862977.1|	-	0.078	13.0	0.1	0.63	10.1	0.1	2.2	2	0	0	2	2	2	0	EF	hand	associated
MFS_1	PF07690.16	gi|408404996|ref|YP_006862979.1|	-	2e-29	102.6	38.5	1.4e-16	60.4	16.1	2.0	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
Sugar_tr	PF00083.24	gi|408404996|ref|YP_006862979.1|	-	0.0003	19.8	11.2	0.0003	19.8	11.2	2.2	1	1	0	2	2	2	1	Sugar	(and	other)	transporter
ATG22	PF11700.8	gi|408404996|ref|YP_006862979.1|	-	2.1	6.9	19.4	1.4	7.4	0.2	3.1	3	1	0	3	3	3	0	Vacuole	effluxer	Atg22	like
Dr_adhesin	PF12393.8	gi|408404996|ref|YP_006862979.1|	-	5	7.6	6.2	51	4.4	2.2	3.1	2	0	0	2	2	2	0	Dr	family	adhesin
PHD_like	PF12910.7	gi|408404997|ref|YP_006862980.1|	-	0.025	14.6	0.2	0.043	13.9	0.2	1.3	1	0	0	1	1	1	0	Antitoxin	of	toxin-antitoxin,	RelE	/	RelB,	TA	system
MS_channel	PF00924.18	gi|408404998|ref|YP_006862981.1|	-	1.3e-49	168.6	0.5	1.3e-49	168.6	0.5	1.5	2	0	0	2	2	2	1	Mechanosensitive	ion	channel
DUF3341	PF11821.8	gi|408404998|ref|YP_006862981.1|	-	0.088	12.5	0.7	0.52	9.9	0.1	2.0	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3341)
FtsX	PF02687.21	gi|408404998|ref|YP_006862981.1|	-	3.2	8.3	10.3	0.97	9.9	1.9	2.3	1	1	1	2	2	2	0	FtsX-like	permease	family
DUF432	PF04254.13	gi|408404999|ref|YP_006862982.1|	-	3.2e-36	124.2	0.6	5.4e-36	123.5	0.6	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF432)
Nitroreductase	PF00881.24	gi|408405000|ref|YP_006862983.1|	-	1.3e-23	83.9	0.8	2.9e-11	43.7	0.0	2.1	1	1	1	2	2	2	2	Nitroreductase	family
TM1586_NiRdase	PF14512.6	gi|408405000|ref|YP_006862983.1|	-	2.9e-09	36.8	0.0	0.0023	17.5	0.0	2.1	2	0	0	2	2	2	2	Putative	TM	nitroreductase
HCV_NS5a_C	PF12941.7	gi|408405000|ref|YP_006862983.1|	-	0.017	15.0	0.0	0.024	14.5	0.0	1.1	1	0	0	1	1	1	0	HCV	NS5a	protein	C-terminal	region
CTV_P6	PF06706.11	gi|408405001|ref|YP_006862984.1|	-	0.12	12.1	0.0	0.19	11.5	0.0	1.3	1	0	0	1	1	1	0	Citrus	tristeza	virus	6-kDa	protein
NHL	PF01436.21	gi|408405002|ref|YP_006862985.1|	-	3.6e-24	83.5	3.3	0.00025	20.9	0.0	7.9	8	0	0	8	8	8	5	NHL	repeat
Redoxin	PF08534.10	gi|408405002|ref|YP_006862985.1|	-	1.3e-13	50.9	0.0	2.9e-13	49.8	0.0	1.6	1	0	0	1	1	1	1	Redoxin
AhpC-TSA	PF00578.21	gi|408405002|ref|YP_006862985.1|	-	1.6e-13	50.7	0.0	2.6e-13	50.0	0.0	1.4	1	0	0	1	1	1	1	AhpC/TSA	family
Thioredoxin_8	PF13905.6	gi|408405002|ref|YP_006862985.1|	-	2.5e-13	50.2	0.0	4.6e-13	49.3	0.0	1.4	1	0	0	1	1	1	1	Thioredoxin-like
SGL	PF08450.12	gi|408405002|ref|YP_006862985.1|	-	0.00012	21.7	0.0	0.89	9.1	0.0	3.6	3	1	1	4	4	4	2	SMP-30/Gluconolactonase/LRE-like	region
Thioredoxin_2	PF13098.6	gi|408405002|ref|YP_006862985.1|	-	0.00015	22.2	0.0	0.00026	21.4	0.0	1.4	1	0	0	1	1	1	1	Thioredoxin-like	domain
LVIVD	PF08309.11	gi|408405002|ref|YP_006862985.1|	-	0.00022	20.5	2.0	0.49	9.8	0.0	3.6	4	0	0	4	4	4	2	LVIVD	repeat
Thioredoxin	PF00085.20	gi|408405002|ref|YP_006862985.1|	-	0.00046	20.1	0.0	0.23	11.5	0.1	2.3	2	0	0	2	2	2	2	Thioredoxin
ANAPC4_WD40	PF12894.7	gi|408405002|ref|YP_006862985.1|	-	0.0019	18.5	0.0	0.015	15.6	0.0	2.5	3	0	0	3	3	3	1	Anaphase-promoting	complex	subunit	4	WD40	domain
Fumerase_C	PF05683.12	gi|408405002|ref|YP_006862985.1|	-	0.031	13.6	0.0	0.76	9.1	0.0	2.3	2	0	0	2	2	2	0	Fumarase	C-terminus
GSHPx	PF00255.19	gi|408405002|ref|YP_006862985.1|	-	0.087	12.4	0.0	0.17	11.5	0.0	1.4	1	0	0	1	1	1	0	Glutathione	peroxidase
RAB3GAP2_N	PF14655.6	gi|408405002|ref|YP_006862985.1|	-	0.14	11.3	0.0	0.23	10.7	0.0	1.2	1	0	0	1	1	1	0	Rab3	GTPase-activating	protein	regulatory	subunit	N-terminus
Cu-oxidase_3	PF07732.15	gi|408405003|ref|YP_006862986.1|	-	3.3e-27	94.9	1.7	2.3e-22	79.3	0.2	2.2	2	0	0	2	2	2	2	Multicopper	oxidase
Cu-oxidase_2	PF07731.14	gi|408405003|ref|YP_006862986.1|	-	1.9e-21	76.3	2.9	1e-10	41.5	0.0	3.2	2	1	0	2	2	2	2	Multicopper	oxidase
Cupredoxin_1	PF13473.6	gi|408405003|ref|YP_006862986.1|	-	0.13	12.4	0.0	4.3	7.5	0.0	2.5	2	0	0	2	2	2	0	Cupredoxin-like	domain
DUF2024	PF09630.10	gi|408405004|ref|YP_006862987.1|	-	2.4e-35	120.3	0.9	2.6e-35	120.1	0.9	1.0	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF2024)
PALP	PF00291.25	gi|408405005|ref|YP_006862988.1|	-	8.8e-88	294.5	4.3	1.1e-87	294.2	4.3	1.1	1	0	0	1	1	1	1	Pyridoxal-phosphate	dependent	enzyme
ACT_4	PF13291.6	gi|408405005|ref|YP_006862988.1|	-	0.002	18.7	0.0	0.0048	17.5	0.0	1.6	1	0	0	1	1	1	1	ACT	domain
ACT	PF01842.25	gi|408405005|ref|YP_006862988.1|	-	0.0036	17.0	0.0	0.0088	15.8	0.0	1.7	1	0	0	1	1	1	1	ACT	domain
HMG_CoA_synt_C	PF08540.10	gi|408405007|ref|YP_006862990.1|	-	1.3e-33	116.8	0.2	2.5e-33	115.9	0.2	1.4	1	1	0	1	1	1	1	Hydroxymethylglutaryl-coenzyme	A	synthase	C	terminal
HMG_CoA_synt_N	PF01154.17	gi|408405007|ref|YP_006862990.1|	-	3.9e-29	101.7	0.4	7.4e-29	100.8	0.1	1.5	2	0	0	2	2	2	1	Hydroxymethylglutaryl-coenzyme	A	synthase	N	terminal
DUF2511	PF10709.9	gi|408405009|ref|YP_006862992.1|	-	0.1	12.9	0.0	0.14	12.5	0.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2511)
Sod_Fe_C	PF02777.18	gi|408405012|ref|YP_006862995.1|	-	1.3e-39	134.5	1.3	2e-39	133.9	1.3	1.3	1	0	0	1	1	1	1	Iron/manganese	superoxide	dismutases,	C-terminal	domain
Sod_Fe_N	PF00081.22	gi|408405012|ref|YP_006862995.1|	-	7.5e-29	100.0	0.9	7.5e-29	100.0	0.9	1.7	2	0	0	2	2	2	1	Iron/manganese	superoxide	dismutases,	alpha-hairpin	domain
CxxCxxCC	PF03692.15	gi|408405013|ref|YP_006862996.1|	-	6.2e-08	33.2	0.0	1.5e-07	32.0	0.0	1.7	1	1	0	1	1	1	1	Putative	zinc-	or	iron-chelating	domain
TRAF_BIRC3_bd	PF16673.5	gi|408405014|ref|YP_006862997.1|	-	0.03	14.1	0.0	0.051	13.4	0.0	1.3	1	0	0	1	1	1	0	TNF	receptor-associated	factor	BIRC3	binding	domain
HTH_5	PF01022.20	gi|408405015|ref|YP_006862998.1|	-	0.0017	18.2	0.0	0.005	16.7	0.0	1.7	2	0	0	2	2	2	1	Bacterial	regulatory	protein,	arsR	family
TrmB	PF01978.19	gi|408405015|ref|YP_006862998.1|	-	0.0023	17.8	0.0	0.0072	16.2	0.0	1.8	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
RP-C	PF03428.13	gi|408405015|ref|YP_006862998.1|	-	0.067	12.8	0.0	0.17	11.6	0.0	1.6	1	0	0	1	1	1	0	Replication	protein	C	N-terminal	domain
HTH_24	PF13412.6	gi|408405015|ref|YP_006862998.1|	-	0.077	12.6	0.1	0.49	10.0	0.0	2.4	3	0	0	3	3	3	0	Winged	helix-turn-helix	DNA-binding
HTH_9	PF08221.11	gi|408405015|ref|YP_006862998.1|	-	0.098	12.8	0.0	0.22	11.6	0.0	1.6	1	0	0	1	1	1	0	RNA	polymerase	III	subunit	RPC82	helix-turn-helix	domain
CARD	PF00619.21	gi|408405015|ref|YP_006862998.1|	-	0.12	12.4	0.2	0.92	9.6	0.1	2.2	2	0	0	2	2	2	0	Caspase	recruitment	domain
HTH_27	PF13463.6	gi|408405015|ref|YP_006862998.1|	-	0.16	12.5	0.2	1.1	9.8	0.0	2.5	3	0	0	3	3	3	0	Winged	helix	DNA-binding	domain
DUF1616	PF07760.11	gi|408405021|ref|YP_006863004.1|	-	0.0022	17.4	0.1	0.0026	17.2	0.1	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1616)
Cu-oxidase	PF00394.22	gi|408405021|ref|YP_006863004.1|	-	0.0059	16.7	0.2	0.0076	16.4	0.2	1.2	1	0	0	1	1	1	1	Multicopper	oxidase
Transglut_C	PF00927.22	gi|408405021|ref|YP_006863004.1|	-	0.11	12.7	0.0	0.16	12.1	0.0	1.2	1	0	0	1	1	1	0	Transglutaminase	family,	C-terminal	ig	like	domain
PEPCK_ATP	PF01293.20	gi|408405022|ref|YP_006863005.1|	-	5.5e-224	744.1	0.0	6.3e-224	743.9	0.0	1.0	1	0	0	1	1	1	1	Phosphoenolpyruvate	carboxykinase
PSD1	PF07587.11	gi|408405022|ref|YP_006863005.1|	-	0.076	12.5	0.0	0.13	11.7	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1553)
DAGK_cat	PF00781.24	gi|408405024|ref|YP_006863007.1|	-	0.039	13.6	0.0	0.051	13.2	0.0	1.3	1	1	0	1	1	1	0	Diacylglycerol	kinase	catalytic	domain
Sigma70_r3	PF04539.16	gi|408405024|ref|YP_006863007.1|	-	0.041	14.0	0.0	0.1	12.7	0.0	1.7	2	0	0	2	2	2	0	Sigma-70	region	3
CMD	PF02627.20	gi|408405024|ref|YP_006863007.1|	-	0.045	13.8	0.0	0.071	13.2	0.0	1.3	1	0	0	1	1	1	0	Carboxymuconolactone	decarboxylase	family
DOT1	PF08123.13	gi|408405026|ref|YP_006863009.1|	-	1.9e-10	40.6	0.1	1.4e-08	34.5	0.1	2.2	1	1	0	1	1	1	1	Histone	methylation	protein	DOT1
Methyltransf_25	PF13649.6	gi|408405026|ref|YP_006863009.1|	-	8.6e-07	29.6	0.1	2.3e-06	28.2	0.1	1.7	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.6	gi|408405026|ref|YP_006863009.1|	-	2.5e-05	24.1	0.1	3.9e-05	23.5	0.1	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
RrnaAD	PF00398.20	gi|408405026|ref|YP_006863009.1|	-	3.7e-05	22.9	0.0	7e-05	22.0	0.0	1.4	2	0	0	2	2	2	1	Ribosomal	RNA	adenine	dimethylase
CMAS	PF02353.20	gi|408405026|ref|YP_006863009.1|	-	4e-05	23.0	0.0	6e-05	22.5	0.0	1.2	1	0	0	1	1	1	1	Mycolic	acid	cyclopropane	synthetase
Methyltransf_11	PF08241.12	gi|408405026|ref|YP_006863009.1|	-	6e-05	23.6	0.0	0.00011	22.8	0.0	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.12	gi|408405026|ref|YP_006863009.1|	-	6.5e-05	23.6	0.0	0.00011	22.8	0.0	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_4	PF02390.17	gi|408405026|ref|YP_006863009.1|	-	0.014	14.8	0.0	0.021	14.3	0.0	1.3	1	0	0	1	1	1	0	Putative	methyltransferase
FtsJ	PF01728.19	gi|408405026|ref|YP_006863009.1|	-	0.15	12.2	0.0	0.2	11.7	0.0	1.2	1	0	0	1	1	1	0	FtsJ-like	methyltransferase
DUF3052	PF11253.8	gi|408405026|ref|YP_006863009.1|	-	0.15	12.0	0.0	0.28	11.1	0.0	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3052)
Thiamine_BP	PF01910.17	gi|408405027|ref|YP_006863010.1|	-	4.1e-26	90.7	1.2	4.6e-26	90.6	1.2	1.0	1	0	0	1	1	1	1	Thiamine-binding	protein
NPV_P10	PF05531.12	gi|408405027|ref|YP_006863010.1|	-	0.075	13.5	4.1	0.6	10.6	0.2	2.2	1	1	1	2	2	2	0	Nucleopolyhedrovirus	P10	protein
ADH_zinc_N	PF00107.26	gi|408405027|ref|YP_006863010.1|	-	0.1	12.6	0.6	0.16	11.9	0.2	1.5	2	0	0	2	2	2	0	Zinc-binding	dehydrogenase
Flavodoxin_1	PF00258.25	gi|408405027|ref|YP_006863010.1|	-	0.12	12.6	0.0	0.14	12.3	0.0	1.2	1	0	0	1	1	1	0	Flavodoxin
DUF3138	PF11336.8	gi|408405027|ref|YP_006863010.1|	-	0.44	9.1	3.3	0.47	9.0	3.3	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3138)
Na_H_Exchanger	PF00999.21	gi|408405028|ref|YP_006863011.1|	-	7.4e-58	196.1	50.1	8.8e-58	195.9	50.1	1.0	1	0	0	1	1	1	1	Sodium/hydrogen	exchanger	family
DUF4605	PF15378.6	gi|408405028|ref|YP_006863011.1|	-	0.017	15.0	3.3	0.017	15.0	3.3	3.5	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF4605)
Rieske	PF00355.26	gi|408405030|ref|YP_006863013.1|	-	1.3e-19	70.0	0.0	1.5e-19	69.7	0.0	1.1	1	0	0	1	1	1	1	Rieske	[2Fe-2S]	domain
Rieske_2	PF13806.6	gi|408405030|ref|YP_006863013.1|	-	1e-06	28.6	0.0	1.3e-06	28.2	0.0	1.1	1	0	0	1	1	1	1	Rieske-like	[2Fe-2S]	domain
OrfB_Zn_ribbon	PF07282.11	gi|408405030|ref|YP_006863013.1|	-	0.12	12.3	0.0	0.18	11.8	0.0	1.3	1	0	0	1	1	1	0	Putative	transposase	DNA-binding	domain
DUF763	PF05559.11	gi|408405031|ref|YP_006863014.1|	-	1.5e-124	415.3	0.0	1.9e-124	414.9	0.0	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF763)
HHH	PF00633.23	gi|408405031|ref|YP_006863014.1|	-	0.00027	20.6	0.0	0.00056	19.7	0.0	1.5	1	0	0	1	1	1	1	Helix-hairpin-helix	motif
SNARE_assoc	PF09335.11	gi|408405032|ref|YP_006863015.1|	-	5.6e-22	78.5	9.4	5.6e-22	78.5	9.4	2.5	2	1	1	3	3	3	1	SNARE	associated	Golgi	protein
DHHC	PF01529.20	gi|408405032|ref|YP_006863015.1|	-	0.47	10.6	2.0	0.87	9.7	2.0	1.4	1	0	0	1	1	1	0	DHHC	palmitoyltransferase
OTCace_N	PF02729.21	gi|408405033|ref|YP_006863016.1|	-	1.3e-53	181.0	0.0	1.9e-53	180.4	0.0	1.3	1	0	0	1	1	1	1	Aspartate/ornithine	carbamoyltransferase,	carbamoyl-P	binding	domain
OTCace	PF00185.24	gi|408405033|ref|YP_006863016.1|	-	2.9e-53	180.1	0.0	4.1e-53	179.6	0.0	1.2	1	0	0	1	1	1	1	Aspartate/ornithine	carbamoyltransferase,	Asp/Orn	binding	domain
SRP54	PF00448.22	gi|408405034|ref|YP_006863017.1|	-	1.2e-69	233.9	0.4	2.1e-69	233.1	0.4	1.4	1	0	0	1	1	1	1	SRP54-type	protein,	GTPase	domain
SRP54_N	PF02881.19	gi|408405034|ref|YP_006863017.1|	-	2.5e-09	37.2	6.3	2.5e-09	37.2	6.3	2.1	2	0	0	2	2	1	1	SRP54-type	protein,	helical	bundle	domain
AAA_30	PF13604.6	gi|408405034|ref|YP_006863017.1|	-	2.6e-06	27.3	0.4	4.4e-06	26.5	0.4	1.3	1	0	0	1	1	1	1	AAA	domain
CbiA	PF01656.23	gi|408405034|ref|YP_006863017.1|	-	0.00032	20.8	0.1	0.00082	19.4	0.0	1.8	2	1	0	2	2	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
AAA_17	PF13207.6	gi|408405034|ref|YP_006863017.1|	-	0.00095	19.6	0.1	0.00095	19.6	0.1	2.5	2	0	0	2	2	1	1	AAA	domain
APS_kinase	PF01583.20	gi|408405034|ref|YP_006863017.1|	-	0.0016	18.4	0.3	0.0049	16.8	0.1	1.9	2	0	0	2	2	2	1	Adenylylsulphate	kinase
AAA	PF00004.29	gi|408405034|ref|YP_006863017.1|	-	0.003	18.0	0.4	0.0084	16.5	0.1	1.9	2	0	0	2	2	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
KdpD	PF02702.17	gi|408405034|ref|YP_006863017.1|	-	0.0052	16.3	0.1	0.011	15.2	0.1	1.5	1	0	0	1	1	1	1	Osmosensitive	K+	channel	His	kinase	sensor	domain
AAA_22	PF13401.6	gi|408405034|ref|YP_006863017.1|	-	0.0063	16.8	0.0	0.02	15.2	0.0	1.8	1	0	0	1	1	1	1	AAA	domain
NTPase_1	PF03266.15	gi|408405034|ref|YP_006863017.1|	-	0.0064	16.4	1.7	0.053	13.4	1.7	2.3	1	1	0	1	1	1	1	NTPase
AAA_16	PF13191.6	gi|408405034|ref|YP_006863017.1|	-	0.012	16.0	0.1	0.012	16.0	0.1	2.3	2	1	1	3	3	2	0	AAA	ATPase	domain
Thymidylate_kin	PF02223.17	gi|408405034|ref|YP_006863017.1|	-	0.015	15.0	0.0	0.015	15.0	0.0	2.6	2	0	0	2	2	2	0	Thymidylate	kinase
AAA_33	PF13671.6	gi|408405034|ref|YP_006863017.1|	-	0.021	15.0	0.0	0.021	15.0	0.0	2.0	2	0	0	2	2	1	0	AAA	domain
LytR_C	PF13399.6	gi|408405034|ref|YP_006863017.1|	-	0.021	15.8	0.8	0.021	15.8	0.8	2.8	3	1	0	3	3	2	0	LytR	cell	envelope-related	transcriptional	attenuator
MobB	PF03205.14	gi|408405034|ref|YP_006863017.1|	-	0.022	14.6	1.5	0.073	13.0	0.4	2.1	1	1	1	2	2	2	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
AAA_28	PF13521.6	gi|408405034|ref|YP_006863017.1|	-	0.033	14.4	0.0	0.033	14.4	0.0	2.3	2	0	0	2	2	2	0	AAA	domain
LpxK	PF02606.14	gi|408405034|ref|YP_006863017.1|	-	0.036	13.2	0.1	0.083	12.0	0.1	1.6	1	0	0	1	1	1	0	Tetraacyldisaccharide-1-P	4'-kinase
MeaB	PF03308.16	gi|408405034|ref|YP_006863017.1|	-	0.042	12.8	2.2	0.084	11.8	0.4	2.2	2	0	0	2	2	2	0	Methylmalonyl	Co-A	mutase-associated	GTPase	MeaB
3HCDH_RFF	PF18321.1	gi|408405034|ref|YP_006863017.1|	-	0.055	13.9	1.6	6.3	7.3	0.0	3.0	3	0	0	3	3	2	0	3-hydroxybutyryl-CoA	dehydrogenase	reduced	Rossmann-fold	domain
6PF2K	PF01591.18	gi|408405034|ref|YP_006863017.1|	-	0.058	12.7	0.1	0.11	11.7	0.1	1.4	1	0	0	1	1	1	0	6-phosphofructo-2-kinase
TPP_enzyme_M	PF00205.22	gi|408405034|ref|YP_006863017.1|	-	0.061	13.1	0.0	0.17	11.6	0.0	1.8	2	0	0	2	2	1	0	Thiamine	pyrophosphate	enzyme,	central	domain
AAA_19	PF13245.6	gi|408405034|ref|YP_006863017.1|	-	0.063	13.6	0.1	0.11	12.9	0.1	1.4	1	0	0	1	1	1	0	AAA	domain
ABC_tran	PF00005.27	gi|408405034|ref|YP_006863017.1|	-	0.16	12.5	0.8	0.24	11.9	0.0	1.8	2	0	0	2	2	1	0	ABC	transporter
SPOUT_MTase	PF02590.17	gi|408405034|ref|YP_006863017.1|	-	0.63	10.0	0.0	0.63	10.0	0.0	2.8	2	1	1	3	3	3	0	Predicted	SPOUT	methyltransferase
NCKAP5	PF15246.6	gi|408405034|ref|YP_006863017.1|	-	1.1	8.8	14.8	2.1	7.8	14.8	1.4	1	0	0	1	1	1	0	Nck-associated	protein	5,	Peripheral	clock	protein
PRCC	PF10253.9	gi|408405034|ref|YP_006863017.1|	-	3.1	8.5	15.4	7.3	7.3	15.4	1.6	1	0	0	1	1	1	0	Mitotic	checkpoint	regulator,	MAD2B-interacting
AAA_11	PF13086.6	gi|408405034|ref|YP_006863017.1|	-	5	6.8	10.8	12	5.6	0.0	2.6	2	1	0	2	2	2	0	AAA	domain
DUF853	PF05872.12	gi|408405034|ref|YP_006863017.1|	-	5.3	5.5	9.7	0.46	9.0	0.2	2.3	2	0	0	2	2	2	0	Bacterial	protein	of	unknown	function	(DUF853)
CDC27	PF09507.10	gi|408405034|ref|YP_006863017.1|	-	5.4	6.3	24.3	8.8	5.6	24.3	1.2	1	0	0	1	1	1	0	DNA	polymerase	subunit	Cdc27
PBP_sp32	PF07222.12	gi|408405034|ref|YP_006863017.1|	-	6.2	6.2	14.7	11	5.4	14.7	1.3	1	0	0	1	1	1	0	Proacrosin	binding	protein	sp32
Prefoldin	PF02996.17	gi|408405035|ref|YP_006863018.1|	-	2.3e-18	66.2	3.0	3.7e-18	65.6	3.0	1.4	1	1	0	1	1	1	1	Prefoldin	subunit
Prefoldin_2	PF01920.20	gi|408405035|ref|YP_006863018.1|	-	0.0024	17.8	8.1	0.0044	17.0	1.7	2.4	1	1	1	2	2	2	1	Prefoldin	subunit
Ribosomal_L5	PF00281.19	gi|408405035|ref|YP_006863018.1|	-	0.019	15.3	1.2	0.089	13.1	0.2	2.5	2	2	0	2	2	2	0	Ribosomal	protein	L5
OmpH	PF03938.14	gi|408405035|ref|YP_006863018.1|	-	0.093	13.1	9.2	0.077	13.3	6.2	2.0	2	0	0	2	2	2	0	Outer	membrane	protein	(OmpH-like)
DUF948	PF06103.11	gi|408405035|ref|YP_006863018.1|	-	0.17	12.2	3.7	7.5	6.9	0.2	2.3	2	0	0	2	2	2	0	Bacterial	protein	of	unknown	function	(DUF948)
DMPK_coil	PF08826.10	gi|408405035|ref|YP_006863018.1|	-	0.31	11.2	9.8	0.18	11.9	3.1	2.8	2	1	1	3	3	3	0	DMPK	coiled	coil	domain	like
CtsR	PF05848.11	gi|408405035|ref|YP_006863018.1|	-	0.45	10.5	2.6	0.75	9.8	0.4	2.2	2	1	0	2	2	2	0	CtsR	N-terminal	HTH	domain
HAUS6_N	PF14661.6	gi|408405035|ref|YP_006863018.1|	-	3.7	7.1	7.8	0.65	9.5	2.0	2.0	2	0	0	2	2	2	0	HAUS	augmin-like	complex	subunit	6	N-terminus
Gp_dh_N	PF00044.24	gi|408405036|ref|YP_006863019.1|	-	0.051	13.9	0.0	3	8.2	0.0	2.3	1	1	1	2	2	2	0	Glyceraldehyde	3-phosphate	dehydrogenase,	NAD	binding	domain
NAD_binding_2	PF03446.15	gi|408405036|ref|YP_006863019.1|	-	0.078	13.1	0.0	0.12	12.6	0.0	1.3	1	0	0	1	1	1	0	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
tRNA-synt_1	PF00133.22	gi|408405038|ref|YP_006863021.1|	-	4.6e-70	236.6	1.3	2.4e-68	230.9	1.3	2.3	1	1	0	1	1	1	1	tRNA	synthetases	class	I	(I,	L,	M	and	V)
tRNA-synt_1g	PF09334.11	gi|408405038|ref|YP_006863021.1|	-	1.2e-24	86.8	0.9	9.2e-12	44.4	0.1	3.9	3	1	1	4	4	4	2	tRNA	synthetases	class	I	(M)
Anticodon_1	PF08264.13	gi|408405038|ref|YP_006863021.1|	-	1.1e-22	80.6	0.1	3.4e-22	79.1	0.1	1.8	1	0	0	1	1	1	1	Anticodon-binding	domain	of	tRNA
tRNA-synt_1e	PF01406.19	gi|408405038|ref|YP_006863021.1|	-	3.7e-13	49.5	0.1	5.1e-08	32.6	0.0	2.5	2	0	0	2	2	2	2	tRNA	synthetases	class	I	(C)	catalytic	domain
tRNA-synt_1_2	PF13603.6	gi|408405038|ref|YP_006863021.1|	-	9e-13	48.1	0.1	4.3e-12	45.9	0.0	2.1	1	1	1	2	2	2	1	Leucyl-tRNA	synthetase,	Domain	2
STI1	PF17830.1	gi|408405038|ref|YP_006863021.1|	-	0.00048	20.0	0.8	0.0014	18.5	0.8	1.8	1	0	0	1	1	1	1	STI1	domain
HTH_23	PF13384.6	gi|408405038|ref|YP_006863021.1|	-	0.077	12.8	0.3	0.58	10.0	0.0	2.6	2	0	0	2	2	2	0	Homeodomain-like	domain
tRNA-synt_2c	PF01411.19	gi|408405039|ref|YP_006863022.1|	-	4.6e-84	282.9	0.0	1.2e-83	281.5	0.0	1.7	1	1	0	1	1	1	1	tRNA	synthetases	class	II	(A)
tRNA_SAD	PF07973.14	gi|408405039|ref|YP_006863022.1|	-	7e-16	58.0	8.9	2.2e-15	56.4	1.2	3.6	4	0	0	4	4	4	1	Threonyl	and	Alanyl	tRNA	synthetase	second	additional	domain
DHHA1	PF02272.19	gi|408405039|ref|YP_006863022.1|	-	2.5e-07	31.2	5.6	9.8e-07	29.3	5.6	2.2	1	0	0	1	1	1	1	DHHA1	domain
RsbU_N	PF08673.10	gi|408405039|ref|YP_006863022.1|	-	0.013	15.5	0.0	0.062	13.4	0.0	2.1	1	0	0	1	1	1	0	Phosphoserine	phosphatase	RsbU,	N-terminal	domain
DUF4456	PF14644.6	gi|408405039|ref|YP_006863022.1|	-	0.34	10.6	4.2	4.1	7.0	0.1	3.0	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF4456)
Thioredoxin	PF00085.20	gi|408405040|ref|YP_006863023.1|	-	4.8e-30	103.6	0.0	5.7e-30	103.3	0.0	1.1	1	0	0	1	1	1	1	Thioredoxin
Thioredoxin_2	PF13098.6	gi|408405040|ref|YP_006863023.1|	-	4.6e-08	33.5	0.1	1.1e-06	29.1	0.1	2.1	1	1	0	1	1	1	1	Thioredoxin-like	domain
Thioredoxin_9	PF14595.6	gi|408405040|ref|YP_006863023.1|	-	3.1e-06	27.0	0.0	3.7e-06	26.7	0.0	1.2	1	0	0	1	1	1	1	Thioredoxin
Thioredoxin_8	PF13905.6	gi|408405040|ref|YP_006863023.1|	-	7.4e-06	26.2	0.0	0.0075	16.6	0.0	2.3	1	1	1	2	2	2	2	Thioredoxin-like
Thioredoxin_3	PF13192.6	gi|408405040|ref|YP_006863023.1|	-	0.00015	21.7	0.0	0.00023	21.1	0.0	1.3	1	0	0	1	1	1	1	Thioredoxin	domain
Thioredoxin_7	PF13899.6	gi|408405040|ref|YP_006863023.1|	-	0.00016	21.7	0.0	0.00023	21.3	0.0	1.2	1	0	0	1	1	1	1	Thioredoxin-like
OST3_OST6	PF04756.13	gi|408405040|ref|YP_006863023.1|	-	0.0013	18.1	0.0	0.0013	18.1	0.0	1.2	1	0	0	1	1	1	1	OST3	/	OST6	family,	transporter	family
AhpC-TSA	PF00578.21	gi|408405040|ref|YP_006863023.1|	-	0.0018	18.2	0.0	0.0031	17.4	0.0	1.4	1	1	0	1	1	1	1	AhpC/TSA	family
Redoxin	PF08534.10	gi|408405040|ref|YP_006863023.1|	-	0.0049	16.6	0.0	0.0063	16.2	0.0	1.2	1	0	0	1	1	1	1	Redoxin
HyaE	PF07449.11	gi|408405040|ref|YP_006863023.1|	-	0.028	14.4	0.0	0.045	13.7	0.0	1.3	1	0	0	1	1	1	0	Hydrogenase-1	expression	protein	HyaE
AsnC_trans_reg	PF01037.21	gi|408405042|ref|YP_006863025.1|	-	4.3e-13	49.0	0.1	6e-13	48.6	0.1	1.2	1	0	0	1	1	1	1	Lrp/AsnC	ligand	binding	domain
HTH_24	PF13412.6	gi|408405042|ref|YP_006863025.1|	-	2.6e-07	30.1	0.6	4.3e-07	29.4	0.6	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_AsnC-type	PF13404.6	gi|408405042|ref|YP_006863025.1|	-	5.7e-06	26.1	0.2	1.1e-05	25.2	0.2	1.5	1	0	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
HTH_11	PF08279.12	gi|408405042|ref|YP_006863025.1|	-	0.0045	16.9	0.3	0.0097	15.8	0.3	1.6	1	0	0	1	1	1	1	HTH	domain
HTH_20	PF12840.7	gi|408405042|ref|YP_006863025.1|	-	0.0053	16.8	0.0	0.02	15.0	0.0	1.8	2	0	0	2	2	2	1	Helix-turn-helix	domain
B-block_TFIIIC	PF04182.12	gi|408405042|ref|YP_006863025.1|	-	0.016	15.3	0.1	0.023	14.8	0.1	1.3	1	0	0	1	1	1	0	B-block	binding	subunit	of	TFIIIC
MarR	PF01047.22	gi|408405042|ref|YP_006863025.1|	-	0.02	14.8	0.2	0.041	13.8	0.2	1.5	1	0	0	1	1	1	0	MarR	family
Ribosomal_S25	PF03297.15	gi|408405042|ref|YP_006863025.1|	-	0.12	12.6	1.6	0.59	10.4	0.5	2.0	2	0	0	2	2	2	0	S25	ribosomal	protein
MarR_2	PF12802.7	gi|408405042|ref|YP_006863025.1|	-	0.15	12.0	0.1	0.24	11.3	0.1	1.3	1	0	0	1	1	1	0	MarR	family
HNH_3	PF13392.6	gi|408405044|ref|YP_006863027.1|	-	0.0014	18.4	0.0	0.0025	17.5	0.0	1.4	1	0	0	1	1	1	1	HNH	endonuclease
HNH	PF01844.23	gi|408405044|ref|YP_006863027.1|	-	0.0064	16.6	0.1	0.012	15.8	0.1	1.5	1	1	0	1	1	1	1	HNH	endonuclease
Terminase_GpA	PF05876.12	gi|408405044|ref|YP_006863027.1|	-	0.023	13.2	0.1	0.025	13.1	0.1	1.0	1	0	0	1	1	1	0	Phage	terminase	large	subunit	(GpA)
DZR	PF12773.7	gi|408405044|ref|YP_006863027.1|	-	0.027	14.5	0.5	0.048	13.7	0.5	1.3	1	1	0	1	1	1	0	Double	zinc	ribbon
zf-C2H2_3	PF13878.6	gi|408405044|ref|YP_006863027.1|	-	0.029	14.2	0.1	0.29	11.0	0.0	2.1	2	0	0	2	2	2	0	zinc-finger	of	acetyl-transferase	ESCO
Zn-ribbon_8	PF09723.10	gi|408405044|ref|YP_006863027.1|	-	0.068	13.3	2.8	0.72	10.0	2.8	2.1	1	1	0	1	1	1	0	Zinc	ribbon	domain
zf-C2H2_11	PF16622.5	gi|408405044|ref|YP_006863027.1|	-	0.086	12.6	0.1	0.086	12.6	0.1	1.6	2	0	0	2	2	2	0	zinc-finger	C2H2-type
Nudix_N_2	PF14803.6	gi|408405044|ref|YP_006863027.1|	-	0.11	12.4	1.9	5.1	7.1	0.3	2.5	2	0	0	2	2	2	0	Nudix	N-terminal
HypA	PF01155.19	gi|408405044|ref|YP_006863027.1|	-	0.17	11.9	1.1	0.39	10.8	1.1	1.6	1	1	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
Whib	PF02467.16	gi|408405044|ref|YP_006863027.1|	-	1.4	9.5	5.4	16	6.2	0.5	2.4	1	1	1	2	2	2	0	Transcription	factor	WhiB
Chordopox_RPO7	PF05864.12	gi|408405045|ref|YP_006863028.1|	-	0.026	14.8	0.2	0.034	14.4	0.2	1.4	1	1	0	1	1	1	0	Chordopoxvirus	DNA-directed	RNA	polymerase	7	kDa	polypeptide	(RPO7)
Perilipin	PF03036.16	gi|408405045|ref|YP_006863028.1|	-	0.058	12.4	0.0	0.058	12.4	0.0	1.0	1	0	0	1	1	1	0	Perilipin	family
HTH_45	PF14947.6	gi|408405046|ref|YP_006863029.1|	-	2.2e-12	46.8	0.1	2.6e-12	46.5	0.1	1.1	1	0	0	1	1	1	1	Winged	helix-turn-helix
DUF4364	PF14277.6	gi|408405046|ref|YP_006863029.1|	-	5.9e-05	22.9	0.0	7.3e-05	22.6	0.0	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4364)
PadR	PF03551.14	gi|408405046|ref|YP_006863029.1|	-	0.0016	18.4	0.3	0.0029	17.5	0.2	1.5	2	0	0	2	2	2	1	Transcriptional	regulator	PadR-like	family
DUF1495	PF07381.11	gi|408405046|ref|YP_006863029.1|	-	0.0096	15.7	0.1	0.012	15.4	0.1	1.3	1	1	0	1	1	1	1	Winged	helix	DNA-binding	domain	(DUF1495)
RQC	PF09382.10	gi|408405046|ref|YP_006863029.1|	-	0.022	14.5	0.1	0.04	13.7	0.1	1.4	1	1	0	1	1	1	0	RQC	domain
HTH_34	PF13601.6	gi|408405046|ref|YP_006863029.1|	-	0.058	13.6	0.0	0.078	13.2	0.0	1.2	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
TrmB	PF01978.19	gi|408405046|ref|YP_006863029.1|	-	0.06	13.2	0.0	0.1	12.5	0.0	1.3	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
DUF505	PF04458.12	gi|408405046|ref|YP_006863029.1|	-	0.06	11.7	0.0	0.065	11.6	0.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF505)
Mrr_N	PF14338.6	gi|408405046|ref|YP_006863029.1|	-	0.075	13.2	0.0	0.12	12.6	0.0	1.5	1	1	0	1	1	1	0	Mrr	N-terminal	domain
Rrf2	PF02082.20	gi|408405046|ref|YP_006863029.1|	-	0.1	13.0	0.0	0.22	11.9	0.0	1.6	2	0	0	2	2	1	0	Transcriptional	regulator
MarR	PF01047.22	gi|408405046|ref|YP_006863029.1|	-	0.15	12.0	0.0	0.27	11.2	0.0	1.4	1	0	0	1	1	1	0	MarR	family
SIMPL	PF04402.14	gi|408405047|ref|YP_006863030.1|	-	9.5e-43	147.0	10.8	1.3e-42	146.6	10.8	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF541)
DUF1657	PF07870.11	gi|408405047|ref|YP_006863030.1|	-	0.0023	17.8	0.5	0.0047	16.8	0.1	1.7	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF1657)
PRTP	PF01366.18	gi|408405047|ref|YP_006863030.1|	-	0.019	13.1	0.2	0.023	12.8	0.2	1.0	1	0	0	1	1	1	0	Herpesvirus	processing	and	transport	protein
DUF5082	PF16888.5	gi|408405047|ref|YP_006863030.1|	-	0.13	12.6	1.0	0.41	10.9	0.2	2.0	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF5082)
DotA	PF11388.8	gi|408405047|ref|YP_006863030.1|	-	0.17	12.1	1.1	0.35	11.1	0.5	1.9	1	1	0	1	1	1	0	Phagosome	trafficking	protein	DotA
CxxCxxCC	PF03692.15	gi|408405049|ref|YP_006863032.1|	-	3.6e-09	37.2	0.0	7.7e-09	36.1	0.0	1.6	1	1	0	1	1	1	1	Putative	zinc-	or	iron-chelating	domain
MJ1316	PF04457.12	gi|408405050|ref|YP_006863033.1|	-	0.0021	18.7	0.0	0.0025	18.5	0.0	1.1	1	0	0	1	1	1	1	MJ1316	RNA	cyclic	group	end	recognition	domain
ChaB	PF06150.12	gi|408405051|ref|YP_006863034.1|	-	4.7e-16	59.1	1.6	6.5e-16	58.7	1.6	1.2	1	0	0	1	1	1	1	ChaB
Aconitase_C	PF00694.19	gi|408405052|ref|YP_006863035.1|	-	1.7e-22	80.2	0.1	4.4e-20	72.4	0.0	2.3	2	1	1	3	3	3	2	Aconitase	C-terminal	domain
Aconitase_2_N	PF06434.13	gi|408405052|ref|YP_006863035.1|	-	0.003	17.2	0.1	0.021	14.5	0.0	1.9	1	1	1	2	2	2	1	Aconitate	hydratase	2	N-terminus
Aconitase	PF00330.20	gi|408405053|ref|YP_006863036.1|	-	1.2e-92	311.3	4.4	4.2e-58	197.5	0.2	2.0	1	1	1	2	2	2	2	Aconitase	family	(aconitate	hydratase)
DUF521	PF04412.13	gi|408405053|ref|YP_006863036.1|	-	0.0024	16.7	0.0	0.0037	16.0	0.0	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF521)
F420_ligase	PF01996.16	gi|408405054|ref|YP_006863037.1|	-	5.7e-46	156.9	0.0	7.2e-46	156.5	0.0	1.1	1	0	0	1	1	1	1	F420-0:Gamma-glutamyl	ligase
TIR-like	PF10137.9	gi|408405055|ref|YP_006863038.1|	-	0.2	11.6	1.1	0.32	11.0	0.2	1.8	2	1	0	2	2	2	0	Predicted	nucleotide-binding	protein	containing	TIR-like	domain
Pilin_N	PF07790.11	gi|408405058|ref|YP_006863041.1|	-	0.083	13.8	0.8	0.13	13.2	0.8	1.4	1	0	0	1	1	1	0	Archaeal	Type	IV	pilin,	N-terminal
HRG	PF16954.5	gi|408405058|ref|YP_006863041.1|	-	0.15	12.5	1.7	0.29	11.6	1.7	1.4	1	0	0	1	1	1	0	Haem-transporter,	endosomal/lysosomal,	haem-responsive	gene
DoxA	PF07680.11	gi|408405059|ref|YP_006863042.1|	-	0.0029	17.5	0.9	0.015	15.2	0.4	2.4	2	0	0	2	2	2	1	TQO	small	subunit	DoxA
GH97_C	PF14509.6	gi|408405059|ref|YP_006863042.1|	-	0.027	14.7	0.3	0.11	12.8	0.1	2.1	2	0	0	2	2	2	0	Glycosyl-hydrolase	97	C-terminal,	oligomerisation
Pilin_N	PF07790.11	gi|408405059|ref|YP_006863042.1|	-	0.51	11.3	6.2	0.13	13.1	0.9	2.9	3	0	0	3	3	3	0	Archaeal	Type	IV	pilin,	N-terminal
OrfB_Zn_ribbon	PF07282.11	gi|408405060|ref|YP_006863043.1|	-	8.8e-23	80.0	1.0	1.2e-22	79.6	1.0	1.2	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
TF_Zn_Ribbon	PF08271.12	gi|408405060|ref|YP_006863043.1|	-	0.045	13.3	3.8	0.087	12.4	3.8	1.4	1	0	0	1	1	1	0	TFIIB	zinc-binding
Ribosomal_L37ae	PF01780.19	gi|408405060|ref|YP_006863043.1|	-	0.055	13.6	0.7	0.084	13.0	0.7	1.3	1	0	0	1	1	1	0	Ribosomal	L37ae	protein	family
DZR	PF12773.7	gi|408405060|ref|YP_006863043.1|	-	0.06	13.4	1.9	0.11	12.6	1.9	1.4	1	0	0	1	1	1	0	Double	zinc	ribbon
A2L_zn_ribbon	PF08792.10	gi|408405060|ref|YP_006863043.1|	-	0.083	12.6	5.4	0.18	11.6	5.4	1.5	1	0	0	1	1	1	0	A2L	zinc	ribbon	domain
PhnA_Zn_Ribbon	PF08274.12	gi|408405060|ref|YP_006863043.1|	-	1.2	9.1	5.8	0.3	11.1	1.2	2.1	2	0	0	2	2	2	0	PhnA	Zinc-Ribbon
zf-C2H2	PF00096.26	gi|408405060|ref|YP_006863043.1|	-	5	7.8	7.6	2.8	8.6	2.2	2.6	2	0	0	2	2	2	0	Zinc	finger,	C2H2	type
UbiA	PF01040.18	gi|408405061|ref|YP_006863044.1|	-	2.8e-36	125.1	14.3	3.7e-36	124.7	14.3	1.2	1	0	0	1	1	1	1	UbiA	prenyltransferase	family
Col_cuticle_N	PF01484.17	gi|408405061|ref|YP_006863044.1|	-	3.3	7.9	0.0	3.3	7.9	0.0	3.6	5	0	0	5	5	5	0	Nematode	cuticle	collagen	N-terminal	domain
HTH_45	PF14947.6	gi|408405062|ref|YP_006863045.1|	-	0.0016	18.4	0.1	0.0041	17.1	0.1	1.7	1	0	0	1	1	1	1	Winged	helix-turn-helix
Hydrolase_4	PF12146.8	gi|408405063|ref|YP_006863046.1|	-	2.3e-32	112.2	0.0	2.9e-32	111.8	0.0	1.1	1	0	0	1	1	1	1	Serine	aminopeptidase,	S33
Abhydrolase_1	PF00561.20	gi|408405063|ref|YP_006863046.1|	-	1.2e-19	71.0	0.0	2.1e-17	63.6	0.0	2.1	1	1	0	1	1	1	1	alpha/beta	hydrolase	fold
Abhydrolase_6	PF12697.7	gi|408405063|ref|YP_006863046.1|	-	8.1e-17	62.6	0.0	1.1e-16	62.2	0.0	1.1	1	0	0	1	1	1	1	Alpha/beta	hydrolase	family
Peptidase_S9	PF00326.21	gi|408405063|ref|YP_006863046.1|	-	9.3e-05	22.0	0.0	0.0019	17.7	0.0	2.2	2	0	0	2	2	2	1	Prolyl	oligopeptidase	family
LIDHydrolase	PF10230.9	gi|408405063|ref|YP_006863046.1|	-	0.00036	20.2	0.0	0.0013	18.3	0.0	1.8	2	0	0	2	2	2	1	Lipid-droplet	associated	hydrolase
PGAP1	PF07819.13	gi|408405063|ref|YP_006863046.1|	-	0.0033	17.2	0.0	0.0089	15.8	0.0	1.7	1	0	0	1	1	1	1	PGAP1-like	protein
DUF1057	PF06342.12	gi|408405063|ref|YP_006863046.1|	-	0.0067	15.5	0.0	0.01	14.9	0.0	1.2	1	0	0	1	1	1	1	Alpha/beta	hydrolase	of	unknown	function	(DUF1057)
Ser_hydrolase	PF06821.13	gi|408405063|ref|YP_006863046.1|	-	0.013	15.4	0.0	0.028	14.3	0.0	1.5	2	0	0	2	2	2	0	Serine	hydrolase
FSH1	PF03959.13	gi|408405063|ref|YP_006863046.1|	-	0.027	14.1	0.0	3.4	7.3	0.0	3.0	2	1	0	2	2	2	0	Serine	hydrolase	(FSH1)
Abhydrolase_2	PF02230.16	gi|408405063|ref|YP_006863046.1|	-	0.048	13.5	0.0	0.71	9.6	0.0	2.5	3	0	0	3	3	3	0	Phospholipase/Carboxylesterase
Abhydrolase_3	PF07859.13	gi|408405063|ref|YP_006863046.1|	-	0.083	12.7	0.0	0.12	12.2	0.0	1.2	1	0	0	1	1	1	0	alpha/beta	hydrolase	fold
Abhydro_lipase	PF04083.16	gi|408405063|ref|YP_006863046.1|	-	0.11	12.1	0.0	2.7	7.7	0.0	2.8	3	0	0	3	3	3	0	Partial	alpha/beta-hydrolase	lipase	region
DUF1749	PF08538.10	gi|408405063|ref|YP_006863046.1|	-	0.13	11.4	0.0	0.18	10.9	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1749)
Abhydrolase_5	PF12695.7	gi|408405063|ref|YP_006863046.1|	-	0.15	11.9	0.0	0.75	9.5	0.0	2.0	1	1	0	1	1	1	0	Alpha/beta	hydrolase	family
DUF900	PF05990.12	gi|408405063|ref|YP_006863046.1|	-	0.17	11.4	0.0	0.51	9.8	0.0	1.8	2	0	0	2	2	2	0	Alpha/beta	hydrolase	of	unknown	function	(DUF900)
Methyltransf_31	PF13847.6	gi|408405064|ref|YP_006863047.1|	-	5.2e-18	65.3	0.0	8.1e-18	64.7	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_11	PF08241.12	gi|408405064|ref|YP_006863047.1|	-	8.3e-17	61.6	0.1	1.3e-16	61.0	0.1	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.6	gi|408405064|ref|YP_006863047.1|	-	9.6e-16	58.3	0.1	1.7e-15	57.5	0.1	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.6	gi|408405064|ref|YP_006863047.1|	-	1.2e-13	51.3	0.0	1.7e-13	50.7	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.12	gi|408405064|ref|YP_006863047.1|	-	1.6e-11	44.8	0.0	2.6e-11	44.1	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Ubie_methyltran	PF01209.18	gi|408405064|ref|YP_006863047.1|	-	1.3e-09	37.8	0.0	1.9e-09	37.2	0.0	1.2	1	0	0	1	1	1	1	ubiE/COQ5	methyltransferase	family
PCMT	PF01135.19	gi|408405064|ref|YP_006863047.1|	-	6.6e-06	26.0	0.0	8.3e-06	25.7	0.0	1.2	1	0	0	1	1	1	1	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
MTS	PF05175.14	gi|408405064|ref|YP_006863047.1|	-	2.5e-05	23.9	0.0	3.9e-05	23.3	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	small	domain
CMAS	PF02353.20	gi|408405064|ref|YP_006863047.1|	-	2.6e-05	23.6	0.0	3.8e-05	23.1	0.0	1.2	1	0	0	1	1	1	1	Mycolic	acid	cyclopropane	synthetase
FtsJ	PF01728.19	gi|408405064|ref|YP_006863047.1|	-	0.00038	20.6	0.2	0.0023	18.1	0.1	2.0	1	1	1	2	2	2	1	FtsJ-like	methyltransferase
Methyltransf_9	PF08003.11	gi|408405064|ref|YP_006863047.1|	-	0.00052	19.0	0.0	0.00076	18.5	0.0	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1698)
GCD14	PF08704.10	gi|408405064|ref|YP_006863047.1|	-	0.0029	17.3	0.1	0.022	14.4	0.0	2.0	2	0	0	2	2	2	1	tRNA	methyltransferase	complex	GCD14	subunit
Methyltransf_32	PF13679.6	gi|408405064|ref|YP_006863047.1|	-	0.0056	16.7	0.0	0.0076	16.2	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
PrmA	PF06325.13	gi|408405064|ref|YP_006863047.1|	-	0.0065	15.9	0.0	0.0091	15.4	0.0	1.2	1	0	0	1	1	1	1	Ribosomal	protein	L11	methyltransferase	(PrmA)
TehB	PF03848.14	gi|408405064|ref|YP_006863047.1|	-	0.0091	15.4	0.0	0.012	15.0	0.0	1.1	1	0	0	1	1	1	1	Tellurite	resistance	protein	TehB
Methyltransf_24	PF13578.6	gi|408405064|ref|YP_006863047.1|	-	0.011	16.8	0.0	0.017	16.1	0.0	1.3	1	0	0	1	1	1	0	Methyltransferase	domain
MetW	PF07021.12	gi|408405064|ref|YP_006863047.1|	-	0.015	14.9	0.1	0.023	14.3	0.1	1.2	1	0	0	1	1	1	0	Methionine	biosynthesis	protein	MetW
Peptidase_U57	PF05582.12	gi|408405064|ref|YP_006863047.1|	-	0.026	13.8	0.0	0.038	13.2	0.0	1.2	1	0	0	1	1	1	0	YabG	peptidase	U57
GidB	PF02527.15	gi|408405064|ref|YP_006863047.1|	-	0.09	12.1	0.1	0.27	10.5	0.1	1.8	1	1	0	1	1	1	0	rRNA	small	subunit	methyltransferase	G
PHO4	PF01384.20	gi|408405066|ref|YP_006863049.1|	-	5.7e-27	94.6	10.4	5.9e-27	94.6	10.4	1.0	1	0	0	1	1	1	1	Phosphate	transporter	family
PhoU_div	PF01865.16	gi|408405067|ref|YP_006863050.1|	-	7.8e-23	80.9	4.7	9.1e-23	80.7	4.7	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF47
DUF4362	PF14275.6	gi|408405067|ref|YP_006863050.1|	-	0.017	15.4	0.4	0.46	10.8	0.1	2.5	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4362)
PMC2NT	PF08066.12	gi|408405067|ref|YP_006863050.1|	-	1.4	9.7	4.4	1.4	9.6	1.6	2.4	2	2	0	2	2	2	0	PMC2NT	(NUC016)	domain
A2L_zn_ribbon	PF08792.10	gi|408405068|ref|YP_006863051.1|	-	0.043	13.5	0.1	0.085	12.6	0.1	1.5	1	0	0	1	1	1	0	A2L	zinc	ribbon	domain
bPH_3	PF14470.6	gi|408405069|ref|YP_006863052.1|	-	1.3e-10	41.5	0.0	1.9e-10	40.9	0.0	1.3	1	0	0	1	1	1	1	Bacterial	PH	domain
DZR	PF12773.7	gi|408405069|ref|YP_006863052.1|	-	2.6e-09	37.0	19.4	2.8e-08	33.7	9.1	1.6	1	1	1	2	2	2	2	Double	zinc	ribbon
zinc_ribbon_15	PF17032.5	gi|408405069|ref|YP_006863052.1|	-	5.6e-07	30.2	9.8	8.6e-05	23.2	1.7	2.2	2	0	0	2	2	2	2	zinc-ribbon	family
zinc_ribbon_2	PF13240.6	gi|408405069|ref|YP_006863052.1|	-	4.2e-06	26.3	11.3	0.0022	17.6	3.4	2.4	2	0	0	2	2	2	2	zinc-ribbon	domain
zf-ribbon_3	PF13248.6	gi|408405069|ref|YP_006863052.1|	-	1.4e-05	24.3	12.5	0.00025	20.3	1.4	2.6	2	1	1	3	3	3	3	zinc-ribbon	domain
UPF0547	PF10571.9	gi|408405069|ref|YP_006863052.1|	-	0.004	17.2	14.3	0.032	14.3	2.4	2.6	2	1	0	2	2	2	2	Uncharacterised	protein	family	UPF0547
zinc-ribbons_6	PF07191.12	gi|408405069|ref|YP_006863052.1|	-	0.01	15.8	10.1	0.09	12.8	1.7	2.2	1	1	0	2	2	2	0	zinc-ribbons
zf-NADH-PPase	PF09297.11	gi|408405069|ref|YP_006863052.1|	-	0.02	14.5	0.5	0.02	14.5	0.5	2.5	2	1	0	2	2	2	0	NADH	pyrophosphatase	zinc	ribbon	domain
DHHC	PF01529.20	gi|408405069|ref|YP_006863052.1|	-	0.03	14.4	7.1	0.77	9.9	0.9	2.2	2	0	0	2	2	2	0	DHHC	palmitoyltransferase
bPH_1	PF08000.11	gi|408405069|ref|YP_006863052.1|	-	0.054	13.6	0.1	0.24	11.5	0.1	2.0	1	1	0	1	1	1	0	Bacterial	PH	domain
HNH	PF01844.23	gi|408405069|ref|YP_006863052.1|	-	0.13	12.5	4.4	8.2	6.7	0.0	3.6	3	1	1	4	4	4	0	HNH	endonuclease
HORMA	PF02301.18	gi|408405069|ref|YP_006863052.1|	-	0.13	11.8	0.0	0.21	11.2	0.0	1.3	1	0	0	1	1	1	0	HORMA	domain
zf-TRM13_CCCH	PF11722.8	gi|408405069|ref|YP_006863052.1|	-	0.23	11.2	2.9	0.25	11.2	1.0	1.9	2	0	0	2	2	2	0	CCCH	zinc	finger	in	TRM13	protein
Cytochrom_c3_2	PF14537.6	gi|408405069|ref|YP_006863052.1|	-	0.25	11.8	7.2	1.3	9.5	0.8	2.2	2	0	0	2	2	2	0	Cytochrome	c3
PHF5	PF03660.14	gi|408405069|ref|YP_006863052.1|	-	0.4	10.9	5.4	0.59	10.4	5.4	1.3	1	0	0	1	1	1	0	PHF5-like	protein
NOB1_Zn_bind	PF08772.11	gi|408405069|ref|YP_006863052.1|	-	0.46	10.7	12.3	0.38	10.9	2.7	2.4	1	1	1	2	2	2	0	Nin	one	binding	(NOB1)	Zn-ribbon	like
zf_UBZ	PF18439.1	gi|408405069|ref|YP_006863052.1|	-	0.5	10.0	13.4	0.72	9.5	0.3	3.5	2	2	2	4	4	4	0	Ubiquitin-Binding	Zinc	Finger
Zn_ribbon_17	PF17120.5	gi|408405069|ref|YP_006863052.1|	-	0.81	9.4	8.9	0.2	11.3	1.4	2.2	1	1	1	2	2	2	0	Zinc-ribbon,	C4HC2	type
HypA	PF01155.19	gi|408405069|ref|YP_006863052.1|	-	2.6	8.1	11.6	1.2	9.2	6.9	2.4	1	1	1	2	2	2	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
DUF2616	PF11077.8	gi|408405069|ref|YP_006863052.1|	-	5.8	6.6	11.0	1.7	8.3	1.6	2.1	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF2616)
zinc_ribbon_9	PF14369.6	gi|408405069|ref|YP_006863052.1|	-	8	6.8	14.2	0.87	9.9	1.7	3.4	1	1	2	3	3	3	0	zinc-ribbon
DUF2960	PF11173.8	gi|408405071|ref|YP_006863054.1|	-	0.12	12.9	0.1	0.19	12.2	0.1	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2960)
N6_N4_Mtase	PF01555.18	gi|408405073|ref|YP_006863056.1|	-	3.5e-50	170.9	0.1	3.4e-49	167.7	0.1	1.9	1	1	0	1	1	1	1	DNA	methylase
Cons_hypoth95	PF03602.15	gi|408405073|ref|YP_006863056.1|	-	0.0023	17.6	0.0	0.1	12.2	0.0	2.3	2	0	0	2	2	2	1	Conserved	hypothetical	protein	95
Methyltransf_31	PF13847.6	gi|408405073|ref|YP_006863056.1|	-	0.0033	17.2	0.0	0.0059	16.4	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
UPF0020	PF01170.18	gi|408405073|ref|YP_006863056.1|	-	0.0097	15.6	0.0	0.61	9.7	0.0	2.7	2	1	0	2	2	2	1	Putative	RNA	methylase	family	UPF0020
MTS	PF05175.14	gi|408405073|ref|YP_006863056.1|	-	0.014	15.0	0.0	0.94	9.0	0.0	2.9	2	1	0	2	2	2	0	Methyltransferase	small	domain
DUF4978	PF16349.5	gi|408405073|ref|YP_006863056.1|	-	0.073	12.7	0.0	0.15	11.7	0.0	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4978)
N6_Mtase	PF02384.16	gi|408405073|ref|YP_006863056.1|	-	0.13	11.5	0.0	18	4.5	0.0	2.8	3	0	0	3	3	3	0	N-6	DNA	Methylase
Methyltransf_25	PF13649.6	gi|408405073|ref|YP_006863056.1|	-	0.13	12.9	0.0	0.52	11.0	0.0	2.0	2	0	0	2	2	2	0	Methyltransferase	domain
Methyltransf_15	PF09445.10	gi|408405073|ref|YP_006863056.1|	-	0.15	11.6	0.0	3.2	7.3	0.0	2.3	2	0	0	2	2	2	0	RNA	cap	guanine-N2	methyltransferase
Nitroreductase	PF00881.24	gi|408405074|ref|YP_006863057.1|	-	3.1e-25	89.2	0.2	1.2e-24	87.2	0.2	1.8	1	1	0	1	1	1	1	Nitroreductase	family
TM1586_NiRdase	PF14512.6	gi|408405074|ref|YP_006863057.1|	-	0.00021	20.9	0.3	0.82	9.2	0.0	3.0	2	1	1	3	3	3	3	Putative	TM	nitroreductase
Methyltransf_4	PF02390.17	gi|408405075|ref|YP_006863058.1|	-	6.1e-07	29.1	0.0	1.5e-06	27.8	0.0	1.6	1	0	0	1	1	1	1	Putative	methyltransferase
PDEase_I	PF00233.19	gi|408405075|ref|YP_006863058.1|	-	0.00062	19.6	0.1	0.0021	17.8	0.1	1.8	2	0	0	2	2	2	1	3'5'-cyclic	nucleotide	phosphodiesterase
HD	PF01966.22	gi|408405075|ref|YP_006863058.1|	-	0.038	14.2	0.0	0.1	12.8	0.0	1.7	1	0	0	1	1	1	0	HD	domain
Methyltransf_31	PF13847.6	gi|408405075|ref|YP_006863058.1|	-	0.047	13.5	0.0	0.099	12.4	0.0	1.5	1	0	0	1	1	1	0	Methyltransferase	domain
Dzip-like_N	PF13815.6	gi|408405075|ref|YP_006863058.1|	-	0.078	13.0	0.0	0.15	12.0	0.0	1.4	1	0	0	1	1	1	0	Iguana/Dzip1-like	DAZ-interacting	protein	N-terminal
HATPase_c	PF02518.26	gi|408405076|ref|YP_006863059.1|	-	8.4e-26	90.7	0.8	2.2e-24	86.1	0.3	2.4	2	0	0	2	2	2	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HisKA	PF00512.25	gi|408405076|ref|YP_006863059.1|	-	2.6e-08	33.8	3.0	6.6e-08	32.5	0.0	3.2	4	1	0	4	4	4	1	His	Kinase	A	(phospho-acceptor)	domain
HAMP	PF00672.25	gi|408405076|ref|YP_006863059.1|	-	3.6e-06	27.2	0.0	5.4e-05	23.5	0.0	3.0	3	0	0	3	3	3	1	HAMP	domain
HATPase_c_2	PF13581.6	gi|408405076|ref|YP_006863059.1|	-	1.3e-05	25.1	0.0	2.8e-05	24.1	0.0	1.6	1	0	0	1	1	1	1	Histidine	kinase-like	ATPase	domain
HATPase_c_3	PF13589.6	gi|408405076|ref|YP_006863059.1|	-	2.4e-05	24.2	1.0	4.6e-05	23.3	0.2	1.9	2	0	0	2	2	2	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HATPase_c_5	PF14501.6	gi|408405076|ref|YP_006863059.1|	-	0.00032	20.6	0.1	0.00093	19.1	0.1	1.8	1	0	0	1	1	1	1	GHKL	domain
LMBR1	PF04791.16	gi|408405076|ref|YP_006863059.1|	-	0.00037	19.5	1.2	0.00049	19.1	1.2	1.2	1	0	0	1	1	1	1	LMBR1-like	membrane	protein
HOOK	PF05622.12	gi|408405076|ref|YP_006863059.1|	-	0.0037	15.5	6.1	0.0051	15.0	6.1	1.1	1	0	0	1	1	1	1	HOOK	protein
IFT57	PF10498.9	gi|408405076|ref|YP_006863059.1|	-	0.0057	15.7	8.1	0.0093	15.0	8.1	1.3	1	0	0	1	1	1	1	Intra-flagellar	transport	protein	57
Exonuc_VII_L	PF02601.15	gi|408405076|ref|YP_006863059.1|	-	0.013	15.1	2.2	0.018	14.6	2.2	1.3	1	0	0	1	1	1	0	Exonuclease	VII,	large	subunit
ADIP	PF11559.8	gi|408405076|ref|YP_006863059.1|	-	0.032	14.3	9.9	0.056	13.5	9.9	1.3	1	0	0	1	1	1	0	Afadin-	and	alpha	-actinin-Binding
OmpH	PF03938.14	gi|408405076|ref|YP_006863059.1|	-	0.043	14.2	5.3	0.096	13.0	5.3	1.6	1	0	0	1	1	1	0	Outer	membrane	protein	(OmpH-like)
COG5	PF10392.9	gi|408405076|ref|YP_006863059.1|	-	0.05	13.8	3.4	0.091	12.9	3.4	1.5	1	0	0	1	1	1	0	Golgi	transport	complex	subunit	5
UPF0449	PF15136.6	gi|408405076|ref|YP_006863059.1|	-	0.12	12.9	4.2	0.26	11.8	4.2	1.5	1	0	0	1	1	1	0	Uncharacterised	protein	family	UPF0449
HIP1_clath_bdg	PF16515.5	gi|408405076|ref|YP_006863059.1|	-	0.18	12.4	12.5	1.5	9.5	12.1	2.3	1	1	1	2	2	2	0	Clathrin-binding	domain	of	Huntingtin-interacting	protein	1
ZapB	PF06005.12	gi|408405076|ref|YP_006863059.1|	-	0.18	12.2	12.0	2.6	8.6	12.2	2.4	1	1	1	2	2	2	0	Cell	division	protein	ZapB
NPV_P10	PF05531.12	gi|408405076|ref|YP_006863059.1|	-	0.19	12.2	4.9	0.72	10.4	2.1	2.6	1	1	1	2	2	2	0	Nucleopolyhedrovirus	P10	protein
DUF724	PF05266.14	gi|408405076|ref|YP_006863059.1|	-	0.67	9.8	8.1	1.1	9.1	8.1	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF724)
Sec20	PF03908.13	gi|408405076|ref|YP_006863059.1|	-	0.69	9.9	4.7	4.1	7.4	0.4	2.6	1	1	1	2	2	2	0	Sec20
V_ATPase_I	PF01496.19	gi|408405076|ref|YP_006863059.1|	-	0.86	7.4	5.8	1.2	7.0	5.8	1.1	1	0	0	1	1	1	0	V-type	ATPase	116kDa	subunit	family
BRE1	PF08647.11	gi|408405076|ref|YP_006863059.1|	-	2.2	8.4	14.4	1.1	9.4	10.9	2.2	1	1	1	2	2	2	0	BRE1	E3	ubiquitin	ligase
DUF3552	PF12072.8	gi|408405076|ref|YP_006863059.1|	-	3.1	7.2	24.2	2.3	7.6	21.0	2.6	2	1	0	2	2	2	0	Domain	of	unknown	function	(DUF3552)
Putative_PNPOx	PF01243.20	gi|408405077|ref|YP_006863060.1|	-	9.9e-13	48.1	0.0	1.3e-12	47.7	0.0	1.1	1	0	0	1	1	1	1	Pyridoxamine	5'-phosphate	oxidase
Pyridox_ox_2	PF12900.7	gi|408405077|ref|YP_006863060.1|	-	0.051	13.6	0.0	0.058	13.4	0.0	1.1	1	0	0	1	1	1	0	Pyridoxamine	5'-phosphate	oxidase
RHH_1	PF01402.21	gi|408405079|ref|YP_006863062.1|	-	0.00069	19.5	0.5	0.001	18.9	0.5	1.3	1	0	0	1	1	1	1	Ribbon-helix-helix	protein,	copG	family
DUF4240	PF14024.6	gi|408405079|ref|YP_006863062.1|	-	0.12	12.6	0.0	0.14	12.4	0.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF4240)
DUF3188	PF11384.8	gi|408405080|ref|YP_006863063.1|	-	0.023	14.4	1.0	0.1	12.3	1.0	2.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3188)
HATPase_c	PF02518.26	gi|408405082|ref|YP_006863065.1|	-	3.8e-27	95.0	0.2	6.5e-27	94.3	0.2	1.4	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
PAS_9	PF13426.7	gi|408405082|ref|YP_006863065.1|	-	3e-13	49.9	0.0	2.5e-12	46.9	0.0	2.2	2	0	0	2	2	2	1	PAS	domain
HisKA	PF00512.25	gi|408405082|ref|YP_006863065.1|	-	1.5e-12	47.4	0.0	2.9e-12	46.4	0.0	1.5	1	0	0	1	1	1	1	His	Kinase	A	(phospho-acceptor)	domain
PAS	PF00989.25	gi|408405082|ref|YP_006863065.1|	-	1.8e-11	44.0	0.0	5.8e-11	42.4	0.0	1.9	2	0	0	2	2	2	1	PAS	fold
PAS_4	PF08448.10	gi|408405082|ref|YP_006863065.1|	-	3e-07	30.7	0.0	5.6e-07	29.8	0.0	1.4	1	0	0	1	1	1	1	PAS	fold
PAS_8	PF13188.7	gi|408405082|ref|YP_006863065.1|	-	1e-06	28.6	0.0	3.6e-06	26.9	0.0	1.9	2	0	0	2	2	2	1	PAS	domain
PAS_3	PF08447.12	gi|408405082|ref|YP_006863065.1|	-	2.5e-06	27.7	0.0	5.8e-06	26.5	0.0	1.6	1	0	0	1	1	1	1	PAS	fold
HATPase_c_3	PF13589.6	gi|408405082|ref|YP_006863065.1|	-	0.00051	19.9	0.0	0.00097	19.0	0.0	1.4	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
AsmA_1	PF13109.6	gi|408405082|ref|YP_006863065.1|	-	0.039	13.4	0.0	0.072	12.6	0.0	1.4	1	0	0	1	1	1	0	AsmA-like	C-terminal	region
HATPase_c_2	PF13581.6	gi|408405082|ref|YP_006863065.1|	-	0.13	12.2	0.0	0.24	11.4	0.0	1.5	1	0	0	1	1	1	0	Histidine	kinase-like	ATPase	domain
Response_reg	PF00072.24	gi|408405083|ref|YP_006863066.1|	-	9.7e-13	48.3	0.6	4.1e-12	46.3	0.6	1.9	1	1	0	1	1	1	1	Response	regulator	receiver	domain
HTH_45	PF14947.6	gi|408405085|ref|YP_006863068.1|	-	9e-07	28.8	0.3	1e-06	28.6	0.3	1.1	1	0	0	1	1	1	1	Winged	helix-turn-helix
Tudor_FRX1	PF18336.1	gi|408405085|ref|YP_006863068.1|	-	0.0063	16.4	0.0	0.011	15.6	0.0	1.4	1	0	0	1	1	1	1	Fragile	X	mental	retardation	Tudor	domain
MarR	PF01047.22	gi|408405085|ref|YP_006863068.1|	-	0.013	15.5	0.0	0.02	14.8	0.0	1.3	1	0	0	1	1	1	0	MarR	family
DUF2680	PF10925.8	gi|408405085|ref|YP_006863068.1|	-	0.059	13.4	1.0	1.1	9.4	0.1	2.3	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2680)
DUF2070	PF09843.9	gi|408405086|ref|YP_006863069.1|	-	0.32	9.2	9.7	0.39	9.0	9.7	1.0	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2070)
DUF5381	PF17353.2	gi|408405086|ref|YP_006863069.1|	-	0.48	10.1	1.8	0.69	9.7	1.8	1.2	1	0	0	1	1	1	0	Family	of	unknown	function	(DUF5381)
IncE	PF17627.2	gi|408405086|ref|YP_006863069.1|	-	6.9	6.7	14.5	0.16	11.9	3.8	2.6	1	1	1	2	2	2	0	Inclusion	membrane	protein	E
SHOCT	PF09851.9	gi|408405087|ref|YP_006863070.1|	-	3.8e-09	36.0	0.5	5.4e-09	35.5	0.5	1.3	1	0	0	1	1	1	1	Short	C-terminal	domain
DUF4271	PF14093.6	gi|408405087|ref|YP_006863070.1|	-	0.0041	17.1	0.1	0.0048	16.8	0.1	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4271)
DUF4381	PF14316.6	gi|408405087|ref|YP_006863070.1|	-	0.0088	16.3	0.8	0.0088	16.3	0.8	1.6	1	1	1	2	2	2	1	Domain	of	unknown	function	(DUF4381)
DUF2207	PF09972.9	gi|408405087|ref|YP_006863070.1|	-	0.01	14.7	0.3	0.01	14.7	0.3	1.1	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2207)
GH-E	PF14410.6	gi|408405087|ref|YP_006863070.1|	-	0.075	13.4	0.5	0.11	12.9	0.5	1.3	1	0	0	1	1	1	0	HNH/ENDO	VII	superfamily	nuclease	with	conserved	GHE	residues
UL2	PF08196.11	gi|408405087|ref|YP_006863070.1|	-	0.16	12.0	2.1	0.29	11.1	2.1	1.4	1	0	0	1	1	1	0	UL2	protein
FeoB_C	PF07664.12	gi|408405087|ref|YP_006863070.1|	-	0.91	9.3	6.0	4.5	7.0	0.8	2.2	2	0	0	2	2	2	0	Ferrous	iron	transport	protein	B	C	terminus
PepSY	PF03413.19	gi|408405088|ref|YP_006863071.1|	-	0.064	13.8	0.2	0.12	13.0	0.2	1.4	1	0	0	1	1	1	0	Peptidase	propeptide	and	YPEB	domain
PHO4	PF01384.20	gi|408405089|ref|YP_006863072.1|	-	0.39	9.7	5.7	0.49	9.4	5.7	1.1	1	0	0	1	1	1	0	Phosphate	transporter	family
HxlR	PF01638.17	gi|408405090|ref|YP_006863073.1|	-	2.7e-16	59.2	0.3	3.2e-16	59.0	0.3	1.1	1	0	0	1	1	1	1	HxlR-like	helix-turn-helix
MarR	PF01047.22	gi|408405090|ref|YP_006863073.1|	-	0.032	14.2	0.1	0.051	13.5	0.1	1.2	1	0	0	1	1	1	0	MarR	family
HTH_27	PF13463.6	gi|408405090|ref|YP_006863073.1|	-	0.041	14.4	0.0	0.052	14.1	0.0	1.2	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
IlvN	PF07991.12	gi|408405091|ref|YP_006863074.1|	-	3.4e-69	231.6	1.2	4.8e-69	231.2	1.2	1.2	1	0	0	1	1	1	1	Acetohydroxy	acid	isomeroreductase,	NADPH-binding	domain
IlvC	PF01450.19	gi|408405091|ref|YP_006863074.1|	-	2.7e-59	199.6	2.1	4.9e-59	198.7	2.1	1.4	1	0	0	1	1	1	1	Acetohydroxy	acid	isomeroreductase,	catalytic	domain
NAD_binding_2	PF03446.15	gi|408405091|ref|YP_006863074.1|	-	4.1e-07	30.3	0.5	9.1e-07	29.2	0.5	1.6	1	0	0	1	1	1	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
2-Hacid_dh_C	PF02826.19	gi|408405091|ref|YP_006863074.1|	-	1.5e-06	27.7	0.2	2.8e-06	26.8	0.2	1.4	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
F420_oxidored	PF03807.17	gi|408405091|ref|YP_006863074.1|	-	0.00012	22.6	1.1	0.00032	21.2	1.1	1.8	1	0	0	1	1	1	1	NADP	oxidoreductase	coenzyme	F420-dependent
AdoHcyase_NAD	PF00670.21	gi|408405091|ref|YP_006863074.1|	-	0.0047	17.0	0.2	0.0093	16.0	0.2	1.4	1	0	0	1	1	1	1	S-adenosyl-L-homocysteine	hydrolase,	NAD	binding	domain
Decorin_bind	PF02352.15	gi|408405091|ref|YP_006863074.1|	-	0.007	16.6	0.0	0.015	15.6	0.0	1.5	1	0	0	1	1	1	1	Decorin	binding	protein
DUF3048_C	PF17479.2	gi|408405091|ref|YP_006863074.1|	-	0.02	15.3	0.2	0.046	14.1	0.0	1.7	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3048)	C-terminal	domain
Arm-DNA-bind_3	PF13356.6	gi|408405091|ref|YP_006863074.1|	-	0.13	12.6	0.0	12	6.4	0.0	2.6	2	0	0	2	2	2	0	Arm	DNA-binding	domain
FACT-Spt16_Nlob	PF14826.6	gi|408405091|ref|YP_006863074.1|	-	0.4	10.5	3.0	0.66	9.8	0.8	2.1	2	0	0	2	2	2	0	FACT	complex	subunit	SPT16	N-terminal	lobe	domain
dCache_1	PF02743.18	gi|408405092|ref|YP_006863075.1|	-	7.2e-19	68.6	0.5	9.5e-19	68.2	0.5	1.1	1	0	0	1	1	1	1	Cache	domain
HisKA	PF00512.25	gi|408405092|ref|YP_006863075.1|	-	0.028	14.4	0.0	0.079	13.0	0.0	1.8	1	0	0	1	1	1	0	His	Kinase	A	(phospho-acceptor)	domain
DUF1425	PF07233.12	gi|408405092|ref|YP_006863075.1|	-	0.038	13.9	0.0	0.08	12.8	0.0	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1425)
HATPase_c	PF02518.26	gi|408405093|ref|YP_006863076.1|	-	1.4e-05	25.5	0.0	0.00025	21.5	0.0	2.0	2	0	0	2	2	2	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
MTS	PF05175.14	gi|408405093|ref|YP_006863076.1|	-	0.0085	15.6	0.0	0.01	15.4	0.0	1.1	1	0	0	1	1	1	1	Methyltransferase	small	domain
Met_10	PF02475.16	gi|408405093|ref|YP_006863076.1|	-	0.065	13.0	0.0	0.081	12.7	0.0	1.1	1	0	0	1	1	1	0	Met-10+	like-protein
HATPase_c	PF02518.26	gi|408405094|ref|YP_006863077.1|	-	3.3e-12	46.9	0.0	4.1e-12	46.6	0.0	1.1	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
DUF3863	PF12979.7	gi|408405094|ref|YP_006863077.1|	-	0.034	13.0	0.0	0.04	12.8	0.0	1.1	1	0	0	1	1	1	0	Domain	of	Unknown	Function	with	PDB	structure	(DUF3863)
Putative_PNPOx	PF01243.20	gi|408405095|ref|YP_006863078.1|	-	1.3e-13	51.0	0.0	1.8e-13	50.5	0.0	1.2	1	0	0	1	1	1	1	Pyridoxamine	5'-phosphate	oxidase
Pyrid_ox_like	PF16242.5	gi|408405095|ref|YP_006863078.1|	-	5.7e-07	29.2	0.0	7.3e-07	28.9	0.0	1.1	1	0	0	1	1	1	1	Pyridoxamine	5'-phosphate	oxidase	like
Pyridox_ox_2	PF12900.7	gi|408405095|ref|YP_006863078.1|	-	2.1e-05	24.6	0.0	2.2e-05	24.5	0.0	1.1	1	0	0	1	1	1	1	Pyridoxamine	5'-phosphate	oxidase
B12-binding	PF02310.19	gi|408405096|ref|YP_006863079.1|	-	3.2e-20	72.4	0.1	3.6e-20	72.2	0.1	1.1	1	0	0	1	1	1	1	B12	binding	domain
Ocnus	PF05005.15	gi|408405096|ref|YP_006863079.1|	-	0.062	13.4	0.0	0.084	13.0	0.0	1.2	1	0	0	1	1	1	0	Janus/Ocnus	family	(Ocnus)
MeaB	PF03308.16	gi|408405098|ref|YP_006863081.1|	-	8.7e-77	257.7	3.7	1e-76	257.4	3.7	1.0	1	0	0	1	1	1	1	Methylmalonyl	Co-A	mutase-associated	GTPase	MeaB
ATP_bind_1	PF03029.17	gi|408405098|ref|YP_006863081.1|	-	5.4e-07	29.6	0.0	0.0089	15.8	0.0	2.3	2	0	0	2	2	2	2	Conserved	hypothetical	ATP	binding	protein
RsgA_GTPase	PF03193.16	gi|408405098|ref|YP_006863081.1|	-	4.6e-05	23.4	0.0	0.0028	17.6	0.0	2.4	2	1	0	2	2	2	1	RsgA	GTPase
CbiA	PF01656.23	gi|408405098|ref|YP_006863081.1|	-	0.0004	20.4	0.1	0.00071	19.6	0.1	1.4	1	0	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
cobW	PF02492.19	gi|408405098|ref|YP_006863081.1|	-	0.00056	19.6	0.1	0.011	15.3	0.1	2.4	1	1	0	1	1	1	1	CobW/HypB/UreG,	nucleotide-binding	domain
MnmE_helical	PF12631.7	gi|408405098|ref|YP_006863081.1|	-	0.0033	17.6	0.2	0.0044	17.2	0.0	1.4	2	0	0	2	2	2	1	MnmE	helical	domain
MobB	PF03205.14	gi|408405098|ref|YP_006863081.1|	-	0.004	17.1	0.0	0.012	15.5	0.0	1.8	2	0	0	2	2	2	1	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
AAA_7	PF12775.7	gi|408405098|ref|YP_006863081.1|	-	0.011	15.3	0.1	1.7	8.1	0.0	2.2	2	0	0	2	2	2	0	P-loop	containing	dynein	motor	region
AAA_30	PF13604.6	gi|408405098|ref|YP_006863081.1|	-	0.012	15.3	0.0	0.038	13.7	0.0	1.8	2	0	0	2	2	2	0	AAA	domain
AAA_16	PF13191.6	gi|408405098|ref|YP_006863081.1|	-	0.04	14.3	0.1	0.11	12.9	0.1	1.8	1	0	0	1	1	1	0	AAA	ATPase	domain
GTP_EFTU	PF00009.27	gi|408405098|ref|YP_006863081.1|	-	0.067	12.7	0.0	6.2	6.3	0.0	2.5	2	1	0	2	2	2	0	Elongation	factor	Tu	GTP	binding	domain
MMR_HSR1	PF01926.23	gi|408405098|ref|YP_006863081.1|	-	0.084	13.0	0.3	0.57	10.3	0.1	2.4	1	1	1	2	2	2	0	50S	ribosome-binding	GTPase
ABC_tran	PF00005.27	gi|408405098|ref|YP_006863081.1|	-	0.16	12.5	0.4	0.37	11.3	0.1	1.8	2	0	0	2	2	2	0	ABC	transporter
MM_CoA_mutase	PF01642.22	gi|408405099|ref|YP_006863082.1|	-	4.1e-224	744.9	0.1	4.7e-224	744.7	0.1	1.0	1	0	0	1	1	1	1	Methylmalonyl-CoA	mutase
BicD	PF09730.9	gi|408405099|ref|YP_006863082.1|	-	0.0012	17.4	1.3	0.0018	16.8	1.3	1.1	1	0	0	1	1	1	1	Microtubule-associated	protein	Bicaudal-D
D5_N	PF08706.11	gi|408405099|ref|YP_006863082.1|	-	0.15	12.4	0.5	0.37	11.0	0.5	1.7	1	0	0	1	1	1	0	D5	N	terminal	like
Na_H_Exchanger	PF00999.21	gi|408405100|ref|YP_006863083.1|	-	5.2e-52	176.9	54.0	6.3e-52	176.6	54.0	1.0	1	0	0	1	1	1	1	Sodium/hydrogen	exchanger	family
Glyoxalase_4	PF13669.6	gi|408405101|ref|YP_006863084.1|	-	1.2e-23	83.5	0.0	1.4e-23	83.3	0.0	1.1	1	0	0	1	1	1	1	Glyoxalase/Bleomycin	resistance	protein/Dioxygenase	superfamily
Glyoxalase	PF00903.25	gi|408405101|ref|YP_006863084.1|	-	4.4e-14	52.8	0.0	5e-14	52.6	0.0	1.0	1	0	0	1	1	1	1	Glyoxalase/Bleomycin	resistance	protein/Dioxygenase	superfamily
Glyoxalase_3	PF13468.6	gi|408405101|ref|YP_006863084.1|	-	3.2e-09	37.1	0.0	3.5e-09	37.0	0.0	1.1	1	0	0	1	1	1	1	Glyoxalase-like	domain
Fmp27_SW	PF10305.9	gi|408405101|ref|YP_006863084.1|	-	0.058	14.1	0.0	0.088	13.5	0.0	1.3	1	0	0	1	1	1	0	RNA	pol	II	promoter	Fmp27	protein	domain
Asn_synthase	PF00733.21	gi|408405102|ref|YP_006863085.1|	-	2.6e-33	116.2	0.3	7e-23	81.9	0.3	2.0	1	1	1	2	2	2	2	Asparagine	synthase
DUF3240	PF11582.8	gi|408405102|ref|YP_006863085.1|	-	0.13	12.4	0.0	0.29	11.3	0.0	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3240)
ABC_tran	PF00005.27	gi|408405104|ref|YP_006863087.1|	-	4.1e-34	118.1	0.0	6.8e-34	117.3	0.0	1.4	1	0	0	1	1	1	1	ABC	transporter
SMC_N	PF02463.19	gi|408405104|ref|YP_006863087.1|	-	8.8e-08	31.9	0.9	1.1e-06	28.2	0.9	2.0	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_21	PF13304.6	gi|408405104|ref|YP_006863087.1|	-	1.3e-07	31.8	0.5	0.0028	17.5	0.0	2.1	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_29	PF13555.6	gi|408405104|ref|YP_006863087.1|	-	6.8e-05	22.5	0.1	0.00013	21.6	0.1	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_15	PF13175.6	gi|408405104|ref|YP_006863087.1|	-	7.7e-05	22.6	0.1	0.36	10.5	0.0	2.1	1	1	0	2	2	2	2	AAA	ATPase	domain
AAA_22	PF13401.6	gi|408405104|ref|YP_006863087.1|	-	0.0003	21.1	0.1	0.0023	18.2	0.1	2.0	1	1	0	1	1	1	1	AAA	domain
RsgA_GTPase	PF03193.16	gi|408405104|ref|YP_006863087.1|	-	0.00051	20.0	0.1	0.0012	18.8	0.1	1.6	1	0	0	1	1	1	1	RsgA	GTPase
AAA_16	PF13191.6	gi|408405104|ref|YP_006863087.1|	-	0.00064	20.1	0.0	0.00076	19.9	0.0	1.4	1	1	0	1	1	1	1	AAA	ATPase	domain
IstB_IS21	PF01695.17	gi|408405104|ref|YP_006863087.1|	-	0.00067	19.4	0.0	0.46	10.2	0.0	2.2	2	0	0	2	2	2	2	IstB-like	ATP	binding	protein
AAA_23	PF13476.6	gi|408405104|ref|YP_006863087.1|	-	0.0045	17.5	0.0	0.0068	16.9	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
MMR_HSR1	PF01926.23	gi|408405104|ref|YP_006863087.1|	-	0.0082	16.2	0.9	0.055	13.5	0.9	2.2	1	1	0	1	1	1	1	50S	ribosome-binding	GTPase
cobW	PF02492.19	gi|408405104|ref|YP_006863087.1|	-	0.014	15.0	0.0	0.026	14.1	0.0	1.5	1	0	0	1	1	1	0	CobW/HypB/UreG,	nucleotide-binding	domain
G-alpha	PF00503.20	gi|408405104|ref|YP_006863087.1|	-	0.015	14.5	0.0	0.019	14.1	0.0	1.2	1	0	0	1	1	1	0	G-protein	alpha	subunit
AAA_30	PF13604.6	gi|408405104|ref|YP_006863087.1|	-	0.023	14.4	0.0	0.056	13.2	0.0	1.6	2	0	0	2	2	2	0	AAA	domain
Dynamin_N	PF00350.23	gi|408405104|ref|YP_006863087.1|	-	0.03	14.4	1.1	0.68	10.0	0.1	2.2	2	0	0	2	2	2	0	Dynamin	family
TniB	PF05621.11	gi|408405104|ref|YP_006863087.1|	-	0.036	13.5	0.0	2.3	7.6	0.0	2.2	2	0	0	2	2	2	0	Bacterial	TniB	protein
NACHT	PF05729.12	gi|408405104|ref|YP_006863087.1|	-	0.047	13.6	0.0	0.43	10.5	0.0	2.1	2	0	0	2	2	2	0	NACHT	domain
AAA_33	PF13671.6	gi|408405104|ref|YP_006863087.1|	-	0.06	13.5	0.1	0.29	11.3	0.0	1.9	2	0	0	2	2	2	0	AAA	domain
T2SSE	PF00437.20	gi|408405104|ref|YP_006863087.1|	-	0.079	12.0	0.2	0.16	11.0	0.1	1.5	2	0	0	2	2	2	0	Type	II/IV	secretion	system	protein
NB-ARC	PF00931.22	gi|408405104|ref|YP_006863087.1|	-	0.085	12.0	0.0	0.16	11.1	0.0	1.4	1	0	0	1	1	1	0	NB-ARC	domain
KAP_NTPase	PF07693.14	gi|408405104|ref|YP_006863087.1|	-	0.085	12.1	0.0	0.12	11.6	0.0	1.3	1	1	0	1	1	1	0	KAP	family	P-loop	domain
AAA_25	PF13481.6	gi|408405104|ref|YP_006863087.1|	-	0.11	12.1	0.1	0.23	11.0	0.1	1.5	2	0	0	2	2	2	0	AAA	domain
NPCBM_assoc	PF10633.9	gi|408405105|ref|YP_006863088.1|	-	2.4e-07	30.9	0.5	0.063	13.5	0.0	3.8	3	0	0	3	3	3	3	NPCBM-associated,	NEW3	domain	of	alpha-galactosidase
DUF11	PF01345.18	gi|408405105|ref|YP_006863088.1|	-	0.0033	17.7	6.7	0.17	12.2	0.9	3.0	2	1	0	2	2	2	2	Domain	of	unknown	function	DUF11
Phage_holin_7_1	PF16081.5	gi|408405105|ref|YP_006863088.1|	-	2.7	8.2	6.3	0.28	11.4	0.9	2.0	2	0	0	2	2	2	0	Mycobacterial	2	TMS	Phage	Holin	(M2	Hol)	Family
MacB_PCD	PF12704.7	gi|408405106|ref|YP_006863089.1|	-	9.9e-16	58.7	2.5	9.9e-16	58.7	2.5	1.7	2	1	0	3	3	3	1	MacB-like	periplasmic	core	domain
FtsX	PF02687.21	gi|408405106|ref|YP_006863089.1|	-	2.9e-12	46.9	2.8	2.9e-12	46.9	2.8	3.1	3	0	0	3	3	3	1	FtsX-like	permease	family
PelG	PF16933.5	gi|408405106|ref|YP_006863089.1|	-	0.35	9.7	8.8	0.23	10.3	2.9	2.1	2	0	0	2	2	2	0	Putative	exopolysaccharide	Exporter	(EPS-E)
DLH	PF01738.18	gi|408405107|ref|YP_006863090.1|	-	7.5e-18	64.9	0.0	9.9e-18	64.5	0.0	1.1	1	0	0	1	1	1	1	Dienelactone	hydrolase	family
AmoC	PF04896.12	gi|408405109|ref|YP_006863092.1|	-	3.2e-13	49.5	7.1	4.2e-13	49.2	7.1	1.1	1	0	0	1	1	1	1	Ammonia	monooxygenase/methane	monooxygenase,	subunit	C
DUF2975	PF11188.8	gi|408405109|ref|YP_006863092.1|	-	0.76	9.7	4.5	0.2	11.5	0.9	1.8	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF2975)
Metallophos	PF00149.28	gi|408405111|ref|YP_006863094.1|	-	3.7e-19	70.0	0.5	9.9e-19	68.6	0.5	1.6	1	1	0	1	1	1	1	Calcineurin-like	phosphoesterase
Metallophos_2	PF12850.7	gi|408405111|ref|YP_006863094.1|	-	2.8e-12	47.2	0.0	4e-12	46.6	0.0	1.3	1	0	0	1	1	1	1	Calcineurin-like	phosphoesterase	superfamily	domain
MutL	PF13941.6	gi|408405111|ref|YP_006863094.1|	-	0.21	10.2	0.0	0.35	9.4	0.0	1.3	1	0	0	1	1	1	0	MutL	protein
Iso_dh	PF00180.20	gi|408405113|ref|YP_006863096.1|	-	7.8e-81	271.9	0.0	9.6e-81	271.6	0.0	1.0	1	0	0	1	1	1	1	Isocitrate/isopropylmalate	dehydrogenase
MTS	PF05175.14	gi|408405114|ref|YP_006863097.1|	-	4.2e-10	39.4	0.0	1.3e-09	37.8	0.0	1.7	1	1	0	1	1	1	1	Methyltransferase	small	domain
Methyltransf_25	PF13649.6	gi|408405114|ref|YP_006863097.1|	-	1.9e-05	25.3	0.0	3.5e-05	24.4	0.0	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_11	PF08241.12	gi|408405114|ref|YP_006863097.1|	-	6.1e-05	23.6	0.1	0.00012	22.7	0.1	1.6	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.6	gi|408405114|ref|YP_006863097.1|	-	0.00021	21.1	0.0	0.00053	19.9	0.0	1.7	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.12	gi|408405114|ref|YP_006863097.1|	-	0.011	16.4	0.1	0.029	15.1	0.1	1.8	1	1	0	1	1	1	0	Methyltransferase	domain
Eco57I	PF07669.11	gi|408405114|ref|YP_006863097.1|	-	0.024	15.2	0.0	0.034	14.6	0.0	1.3	1	0	0	1	1	1	0	Eco57I	restriction-modification	methylase
N6_Mtase	PF02384.16	gi|408405114|ref|YP_006863097.1|	-	0.038	13.3	0.0	0.079	12.2	0.0	1.5	2	0	0	2	2	2	0	N-6	DNA	Methylase
UPF0020	PF01170.18	gi|408405114|ref|YP_006863097.1|	-	0.051	13.3	0.0	0.16	11.6	0.0	1.8	1	1	0	1	1	1	0	Putative	RNA	methylase	family	UPF0020
RrnaAD	PF00398.20	gi|408405115|ref|YP_006863098.1|	-	4e-41	140.8	0.1	4.7e-41	140.6	0.1	1.1	1	0	0	1	1	1	1	Ribosomal	RNA	adenine	dimethylase
Methyltransf_31	PF13847.6	gi|408405115|ref|YP_006863098.1|	-	1.6e-05	24.7	0.0	2.2e-05	24.3	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
PCMT	PF01135.19	gi|408405115|ref|YP_006863098.1|	-	1.8e-05	24.6	0.1	0.00025	20.9	0.0	2.1	2	0	0	2	2	2	1	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
Methyltransf_25	PF13649.6	gi|408405115|ref|YP_006863098.1|	-	6.5e-05	23.6	0.0	0.00014	22.5	0.0	1.6	1	0	0	1	1	1	1	Methyltransferase	domain
MTS	PF05175.14	gi|408405115|ref|YP_006863098.1|	-	8.3e-05	22.2	0.0	0.0002	20.9	0.0	1.6	2	0	0	2	2	2	1	Methyltransferase	small	domain
Methyltransf_11	PF08241.12	gi|408405115|ref|YP_006863098.1|	-	0.0021	18.6	0.1	0.0053	17.4	0.0	1.7	2	0	0	2	2	2	1	Methyltransferase	domain
Methyltransf_18	PF12847.7	gi|408405115|ref|YP_006863098.1|	-	0.034	14.1	0.0	0.065	13.2	0.0	1.4	1	0	0	1	1	1	0	Methyltransferase	domain
PrmA	PF06325.13	gi|408405115|ref|YP_006863098.1|	-	0.035	13.5	0.0	0.072	12.5	0.0	1.4	2	0	0	2	2	2	0	Ribosomal	protein	L11	methyltransferase	(PrmA)
DREV	PF05219.12	gi|408405115|ref|YP_006863098.1|	-	0.045	12.9	0.0	0.061	12.4	0.0	1.3	1	0	0	1	1	1	0	DREV	methyltransferase
Methyltransf_23	PF13489.6	gi|408405115|ref|YP_006863098.1|	-	0.05	13.4	0.0	0.073	12.9	0.0	1.3	1	0	0	1	1	1	0	Methyltransferase	domain
Methyltransf_32	PF13679.6	gi|408405115|ref|YP_006863098.1|	-	0.055	13.5	0.0	0.11	12.4	0.0	1.5	1	0	0	1	1	1	0	Methyltransferase	domain
Leo1	PF04004.13	gi|408405115|ref|YP_006863098.1|	-	0.085	12.7	0.2	1.9	8.3	0.0	2.1	2	0	0	2	2	2	0	Leo1-like	protein
DUF655	PF04919.12	gi|408405116|ref|YP_006863099.1|	-	4.3e-54	183.2	0.8	5e-54	183.0	0.8	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF655)
HHH_6	PF14579.6	gi|408405116|ref|YP_006863099.1|	-	3.6e-05	24.0	0.1	0.00014	22.1	0.0	2.0	2	1	1	3	3	3	1	Helix-hairpin-helix	motif
HHH_3	PF12836.7	gi|408405116|ref|YP_006863099.1|	-	0.021	15.1	0.0	0.061	13.6	0.0	1.8	1	1	0	1	1	1	0	Helix-hairpin-helix	motif
GP24_25	PF17388.2	gi|408405116|ref|YP_006863099.1|	-	0.087	12.8	0.2	0.25	11.3	0.0	1.8	2	0	0	2	2	2	0	Tail	assembly	gene	products	24	&	25
RNA_pol_Rpb4	PF03874.16	gi|408405117|ref|YP_006863100.1|	-	2.9e-09	37.3	0.6	3.6e-09	37.0	0.6	1.1	1	0	0	1	1	1	1	RNA	polymerase	Rpb4
DUF3458_C	PF17432.2	gi|408405117|ref|YP_006863100.1|	-	0.011	15.2	0.1	0.014	14.8	0.1	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3458_C)	ARM	repeats
Atx10homo_assoc	PF09759.9	gi|408405117|ref|YP_006863100.1|	-	0.046	13.7	0.2	0.063	13.3	0.2	1.2	1	0	0	1	1	1	0	Spinocerebellar	ataxia	type	10	protein	domain
Ribosomal_L21e	PF01157.18	gi|408405118|ref|YP_006863101.1|	-	8.4e-18	64.1	1.4	9.8e-18	63.9	1.4	1.1	1	0	0	1	1	1	1	Ribosomal	protein	L21e
Rad51	PF08423.11	gi|408405119|ref|YP_006863102.1|	-	1.3e-86	290.1	0.2	1.5e-86	289.8	0.2	1.0	1	0	0	1	1	1	1	Rad51
RecA	PF00154.21	gi|408405119|ref|YP_006863102.1|	-	2.3e-13	50.2	0.2	3e-13	49.9	0.2	1.1	1	0	0	1	1	1	1	recA	bacterial	DNA	recombination	protein
ATPase	PF06745.13	gi|408405119|ref|YP_006863102.1|	-	1.6e-09	37.5	0.3	2.7e-09	36.7	0.3	1.4	1	1	0	1	1	1	1	KaiC
AAA_25	PF13481.6	gi|408405119|ref|YP_006863102.1|	-	1.1e-06	28.4	0.0	1.7e-06	27.8	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
AAA_24	PF13479.6	gi|408405119|ref|YP_006863102.1|	-	0.0012	18.6	0.0	0.0021	17.8	0.0	1.5	1	0	0	1	1	1	1	AAA	domain
AAA_22	PF13401.6	gi|408405119|ref|YP_006863102.1|	-	0.0097	16.2	0.1	0.02	15.1	0.1	1.6	1	1	0	1	1	1	1	AAA	domain
PAXNEB	PF05625.11	gi|408405119|ref|YP_006863102.1|	-	0.072	12.2	0.1	0.45	9.6	0.0	1.9	2	0	0	2	2	2	0	PAXNEB	protein
ABC_tran	PF00005.27	gi|408405119|ref|YP_006863102.1|	-	0.086	13.3	0.0	0.15	12.5	0.0	1.4	1	0	0	1	1	1	0	ABC	transporter
Monooxygenase_B	PF04744.12	gi|408405120|ref|YP_006863103.1|	-	4.6e-14	52.1	0.0	9.5e-14	51.0	0.0	1.4	1	1	0	1	1	1	1	Monooxygenase	subunit	B	protein
TP_methylase	PF00590.20	gi|408405121|ref|YP_006863104.1|	-	1.5e-36	126.4	0.1	1.8e-36	126.1	0.1	1.1	1	0	0	1	1	1	1	Tetrapyrrole	(Corrin/Porphyrin)	Methylases
AA_kinase	PF00696.28	gi|408405122|ref|YP_006863105.1|	-	1.8e-50	171.8	0.7	1.8e-50	171.8	0.7	2.0	2	0	0	2	2	2	1	Amino	acid	kinase	family
ACT_7	PF13840.6	gi|408405122|ref|YP_006863105.1|	-	2.9e-22	78.2	3.4	1.9e-10	40.4	0.1	2.7	3	0	0	3	3	3	2	ACT	domain
ACT	PF01842.25	gi|408405122|ref|YP_006863105.1|	-	2.1e-20	72.1	0.4	9.6e-10	38.1	0.1	2.7	2	0	0	2	2	2	2	ACT	domain
ACT_6	PF13740.6	gi|408405122|ref|YP_006863105.1|	-	0.034	14.1	3.7	0.33	11.0	0.1	3.2	4	0	0	4	4	4	0	ACT	domain
PCNA_N	PF00705.18	gi|408405123|ref|YP_006863106.1|	-	1.8e-17	63.3	0.0	3e-16	59.3	0.0	2.0	2	0	0	2	2	2	1	Proliferating	cell	nuclear	antigen,	N-terminal	domain
PCNA_C	PF02747.15	gi|408405123|ref|YP_006863106.1|	-	2.8e-16	59.8	0.0	3.4e-15	56.3	0.0	2.3	2	1	0	2	2	2	1	Proliferating	cell	nuclear	antigen,	C-terminal	domain
Rad1	PF02144.16	gi|408405123|ref|YP_006863106.1|	-	1.4e-06	27.6	0.0	0.00044	19.4	0.1	2.1	1	1	0	2	2	2	2	Repair	protein	Rad1/Rec1/Rad17
Rad9	PF04139.13	gi|408405123|ref|YP_006863106.1|	-	0.00045	19.7	0.0	0.00059	19.4	0.0	1.1	1	0	0	1	1	1	1	Rad9
TFIIS_C	PF01096.18	gi|408405124|ref|YP_006863107.1|	-	7e-19	67.4	12.8	1.2e-18	66.7	6.1	2.2	2	0	0	2	2	2	1	Transcription	factor	S-II	(TFIIS)
DUF2752	PF10825.8	gi|408405124|ref|YP_006863107.1|	-	0.00015	21.7	0.4	0.0037	17.3	0.0	2.3	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF2752)
zinc_ribbon_4	PF13717.6	gi|408405124|ref|YP_006863107.1|	-	0.00068	19.5	10.7	0.2	11.6	1.1	3.2	3	0	0	3	3	3	1	zinc-ribbon	domain
Lar_restr_allev	PF14354.6	gi|408405124|ref|YP_006863107.1|	-	0.0042	17.4	1.7	0.0042	17.4	1.7	1.9	1	1	1	2	2	2	1	Restriction	alleviation	protein	Lar
Zn-ribbon_8	PF09723.10	gi|408405124|ref|YP_006863107.1|	-	0.0054	16.8	7.7	4.3	7.5	0.1	3.3	3	0	0	3	3	3	0	Zinc	ribbon	domain
DUF2387	PF09526.10	gi|408405124|ref|YP_006863107.1|	-	0.0054	16.8	4.9	0.25	11.5	0.2	2.4	2	1	0	2	2	2	1	Probable	metal-binding	protein	(DUF2387)
zf-ZPR1	PF03367.13	gi|408405124|ref|YP_006863107.1|	-	0.011	15.6	3.1	0.84	9.5	0.2	2.1	2	0	0	2	2	2	0	ZPR1	zinc-finger	domain
TRAF6_Z2	PF18048.1	gi|408405124|ref|YP_006863107.1|	-	0.011	15.8	1.9	1.8	8.7	0.2	2.4	2	0	0	2	2	2	0	TNF	receptor-associated	factor	6	zinc	finger	2
zinc_ribbon_5	PF13719.6	gi|408405124|ref|YP_006863107.1|	-	0.015	15.0	3.9	8	6.3	0.1	3.2	3	0	0	3	3	3	0	zinc-ribbon	domain
Zn_Tnp_IS1595	PF12760.7	gi|408405124|ref|YP_006863107.1|	-	0.019	15.0	9.1	0.3	11.1	4.9	2.5	2	1	0	2	2	2	0	Transposase	zinc-ribbon	domain
zf-ribbon_3	PF13248.6	gi|408405124|ref|YP_006863107.1|	-	0.027	13.9	10.5	0.37	10.3	0.2	3.0	3	0	0	3	3	3	0	zinc-ribbon	domain
zinc_ribbon_2	PF13240.6	gi|408405124|ref|YP_006863107.1|	-	0.038	13.7	9.4	2.3	8.1	0.6	3.3	3	0	0	3	3	3	0	zinc-ribbon	domain
Mu-like_Com	PF10122.9	gi|408405124|ref|YP_006863107.1|	-	0.044	13.2	2.2	1.7	8.1	0.0	2.8	3	0	0	3	3	3	0	Mu-like	prophage	protein	Com
zf-H2C2_2	PF13465.6	gi|408405124|ref|YP_006863107.1|	-	0.044	14.2	6.5	5.6	7.6	0.6	3.2	3	0	0	3	3	3	0	Zinc-finger	double	domain
DNA_RNApol_7kD	PF03604.13	gi|408405124|ref|YP_006863107.1|	-	0.047	13.4	4.9	13	5.5	0.1	3.2	3	0	0	3	3	3	0	DNA	directed	RNA	polymerase,	7	kDa	subunit
Baculo_LEF5_C	PF11792.8	gi|408405124|ref|YP_006863107.1|	-	0.052	13.2	0.1	0.052	13.2	0.1	2.4	3	0	0	3	3	2	0	Baculoviridae	late	expression	factor	5	C-terminal	domain
zf-DNA_Pol	PF08996.10	gi|408405124|ref|YP_006863107.1|	-	0.059	13.1	0.4	0.059	13.1	0.4	2.0	1	1	1	2	2	2	0	DNA	Polymerase	alpha	zinc	finger
Nudix_N_2	PF14803.6	gi|408405124|ref|YP_006863107.1|	-	0.06	13.3	6.6	0.66	9.9	1.2	3.5	3	1	0	3	3	3	0	Nudix	N-terminal
VP_N-CPKC	PF11475.8	gi|408405124|ref|YP_006863107.1|	-	0.063	13.2	4.9	16	5.5	0.5	3.5	3	0	0	3	3	3	0	Virion	protein	N	terminal	domain
RNA_POL_M_15KD	PF02150.16	gi|408405124|ref|YP_006863107.1|	-	0.07	13.0	4.1	0.59	10.0	0.7	2.9	2	1	0	2	2	2	0	RNA	polymerases	M/15	Kd	subunit
zf-PHD-like	PF15446.6	gi|408405124|ref|YP_006863107.1|	-	0.08	12.6	6.6	0.21	11.2	0.8	2.0	1	1	1	2	2	2	0	PHD/FYVE-zinc-finger	like	domain
Anti-TRAP	PF15777.5	gi|408405124|ref|YP_006863107.1|	-	0.12	12.3	2.8	5.6	7.0	0.1	2.9	3	0	0	3	3	3	0	Tryptophan	RNA-binding	attenuator	protein	inhibitory	protein
TF_Zn_Ribbon	PF08271.12	gi|408405124|ref|YP_006863107.1|	-	0.13	11.8	5.7	0.18	11.4	0.4	2.6	2	1	0	2	2	2	0	TFIIB	zinc-binding
Zn_Tnp_IS1	PF03811.13	gi|408405124|ref|YP_006863107.1|	-	0.14	11.9	4.4	6.2	6.6	0.1	3.1	3	0	0	3	3	3	0	InsA	N-terminal	domain
DZR	PF12773.7	gi|408405124|ref|YP_006863107.1|	-	0.24	11.5	8.3	17	5.5	8.3	2.7	1	1	0	1	1	1	0	Double	zinc	ribbon
Opy2	PF09463.10	gi|408405124|ref|YP_006863107.1|	-	0.35	11.2	5.9	3.7	8.0	0.0	3.1	3	0	0	3	3	3	0	Opy2	protein
UPF0547	PF10571.9	gi|408405124|ref|YP_006863107.1|	-	0.38	10.9	8.7	2	8.6	0.3	3.0	3	0	0	3	3	3	0	Uncharacterised	protein	family	UPF0547
DNA_ligase_ZBD	PF03119.16	gi|408405124|ref|YP_006863107.1|	-	0.45	10.6	5.8	4.6	7.4	0.0	3.1	3	0	0	3	3	3	0	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
zf-Mss51	PF13824.6	gi|408405124|ref|YP_006863107.1|	-	0.62	10.2	8.3	5.6	7.1	0.8	3.0	2	1	1	3	3	3	0	Zinc-finger	of	mitochondrial	splicing	suppressor	51
Ogr_Delta	PF04606.12	gi|408405124|ref|YP_006863107.1|	-	0.63	10.1	11.9	6.8	6.8	5.8	2.8	2	2	0	2	2	2	0	Ogr/Delta-like	zinc	finger
Zn_ribbon_SprT	PF17283.2	gi|408405124|ref|YP_006863107.1|	-	0.64	10.0	6.4	5.9	6.9	0.2	3.0	3	0	0	3	3	3	0	SprT-like	zinc	ribbon	domain
zf_UBZ	PF18439.1	gi|408405124|ref|YP_006863107.1|	-	0.69	9.6	5.9	21	4.8	0.0	3.1	3	0	0	3	3	3	0	Ubiquitin-Binding	Zinc	Finger
zinc_ribbon_15	PF17032.5	gi|408405124|ref|YP_006863107.1|	-	0.73	10.6	9.6	21	6.0	9.6	2.1	1	1	0	1	1	1	0	zinc-ribbon	family
zf-ISL3	PF14690.6	gi|408405124|ref|YP_006863107.1|	-	0.83	10.4	7.5	4.7	7.9	0.6	2.9	3	0	0	3	3	3	0	zinc-finger	of	transposase	IS204/IS1001/IS1096/IS1165
OrfB_Zn_ribbon	PF07282.11	gi|408405124|ref|YP_006863107.1|	-	0.95	9.4	10.8	2.9	7.9	0.9	2.9	1	1	2	3	3	3	0	Putative	transposase	DNA-binding	domain
Prim_Zn_Ribbon	PF08273.12	gi|408405124|ref|YP_006863107.1|	-	1.3	9.3	7.0	14	6.1	2.8	2.6	2	1	0	2	2	2	0	Zinc-binding	domain	of	primase-helicase
DUF3797	PF12677.7	gi|408405124|ref|YP_006863107.1|	-	1.6	8.7	7.4	4.1	7.4	0.2	3.0	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF3797)
HypA	PF01155.19	gi|408405124|ref|YP_006863107.1|	-	1.8	8.6	7.3	75	3.4	7.3	2.6	1	1	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
zf-C2H2_4	PF13894.6	gi|408405124|ref|YP_006863107.1|	-	1.9	9.5	7.3	85	4.4	0.5	3.2	3	0	0	3	3	3	0	C2H2-type	zinc	finger
C1_4	PF07975.12	gi|408405124|ref|YP_006863107.1|	-	2.4	8.5	9.8	2.5	8.4	3.1	3.0	1	1	1	2	2	2	0	TFIIH	C1-like	domain
Rubredoxin_2	PF18073.1	gi|408405124|ref|YP_006863107.1|	-	2.5	7.9	13.2	14	5.5	1.1	3.2	3	0	0	3	3	3	0	Rubredoxin	metal	binding	domain
zf-C2H2	PF00096.26	gi|408405124|ref|YP_006863107.1|	-	2.6	8.7	6.8	95	3.8	0.3	3.2	3	0	0	3	3	3	0	Zinc	finger,	C2H2	type
RbpA	PF13397.6	gi|408405124|ref|YP_006863107.1|	-	4.6	7.9	6.9	2.3	8.9	1.7	2.3	1	1	1	2	2	2	0	RNA	polymerase-binding	protein
zf-ACC	PF17848.1	gi|408405124|ref|YP_006863107.1|	-	4.9	7.3	10.4	10	6.3	0.3	3.2	3	0	0	3	3	3	0	Acetyl-coA	carboxylase	zinc	finger	domain
zf-HIT	PF04438.16	gi|408405124|ref|YP_006863107.1|	-	5.3	7.0	9.0	28	4.7	0.7	3.1	3	0	0	3	3	3	0	HIT	zinc	finger
zf-IS66	PF13005.7	gi|408405124|ref|YP_006863107.1|	-	7.1	7.1	7.7	23	5.5	0.2	3.2	3	0	0	3	3	3	0	zinc-finger	binding	domain	of	transposase	IS66
zf-C4_Topoisom	PF01396.19	gi|408405124|ref|YP_006863107.1|	-	7.9	6.4	11.8	4.9	7.0	0.6	2.8	2	1	0	2	2	2	0	Topoisomerase	DNA	binding	C4	zinc	finger
RNA_pol_L_2	PF13656.6	gi|408405125|ref|YP_006863108.1|	-	1.5e-13	50.3	0.1	1.9e-13	50.0	0.1	1.2	1	0	0	1	1	1	1	RNA	polymerase	Rpb3/Rpb11	dimerisation	domain
Radical_SAM	PF04055.21	gi|408405127|ref|YP_006863110.1|	-	2.4e-13	50.8	0.1	4.6e-13	49.9	0.1	1.4	1	0	0	1	1	1	1	Radical	SAM	superfamily
Fer4_12	PF13353.6	gi|408405127|ref|YP_006863110.1|	-	0.036	14.3	0.0	0.073	13.3	0.0	1.5	1	0	0	1	1	1	0	4Fe-4S	single	cluster	domain
zf-ribbon_3	PF13248.6	gi|408405127|ref|YP_006863110.1|	-	0.26	10.7	11.9	0.78	9.2	2.9	3.2	3	0	0	3	3	3	0	zinc-ribbon	domain
OrfB_Zn_ribbon	PF07282.11	gi|408405128|ref|YP_006863111.1|	-	1.6e-20	72.8	0.4	2.3e-20	72.3	0.4	1.3	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
Zn_Tnp_IS1595	PF12760.7	gi|408405128|ref|YP_006863111.1|	-	0.02	14.9	0.2	0.035	14.1	0.2	1.4	1	0	0	1	1	1	0	Transposase	zinc-ribbon	domain
zinc_ribbon_4	PF13717.6	gi|408405128|ref|YP_006863111.1|	-	0.022	14.7	1.4	3.8	7.5	0.7	2.7	1	1	1	2	2	2	0	zinc-ribbon	domain
TF_Zn_Ribbon	PF08271.12	gi|408405128|ref|YP_006863111.1|	-	0.024	14.2	0.2	1.6	8.3	0.0	2.2	2	0	0	2	2	2	0	TFIIB	zinc-binding
zf-C2H2_3	PF13878.6	gi|408405128|ref|YP_006863111.1|	-	0.071	12.9	1.1	8.2	6.3	0.1	2.4	2	0	0	2	2	2	0	zinc-finger	of	acetyl-transferase	ESCO
Vps36-NZF-N	PF16988.5	gi|408405128|ref|YP_006863111.1|	-	0.21	11.0	1.2	15	5.0	0.2	2.5	1	1	1	2	2	2	0	Vacuolar	protein	sorting	36	NZF-N	zinc-finger	domain
HTH_OrfB_IS605	PF12323.8	gi|408405129|ref|YP_006863112.1|	-	2.1e-09	36.7	0.0	2.1e-09	36.7	0.0	1.6	2	0	0	2	2	2	1	Helix-turn-helix	domain
Nitroreductase	PF00881.24	gi|408405130|ref|YP_006863113.1|	-	2.6e-13	50.4	0.0	1.3e-07	31.8	0.0	2.1	1	1	1	2	2	2	2	Nitroreductase	family
TM1586_NiRdase	PF14512.6	gi|408405130|ref|YP_006863113.1|	-	0.0013	18.4	0.0	0.069	12.7	0.0	2.0	1	1	0	1	1	1	1	Putative	TM	nitroreductase
Archaeal_AmoA	PF12942.7	gi|408405131|ref|YP_006863114.1|	-	1.2e-120	400.0	16.5	1.4e-120	399.7	16.5	1.0	1	0	0	1	1	1	1	Archaeal	ammonia	monooxygenase	subunit	A	(AmoA)
MG2	PF01835.19	gi|408405133|ref|YP_006863116.1|	-	0.11	13.0	0.1	0.99	9.9	0.0	2.5	2	1	1	3	3	3	0	MG2	domain
UDPG_MGDP_dh_N	PF03721.14	gi|408405138|ref|YP_006863121.1|	-	1.7e-32	112.5	0.0	4.2e-32	111.2	0.0	1.6	2	0	0	2	2	2	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
UDPG_MGDP_dh	PF00984.19	gi|408405138|ref|YP_006863121.1|	-	1.1e-22	80.1	0.0	2.1e-22	79.1	0.0	1.5	1	0	0	1	1	1	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	central	domain
UDPG_MGDP_dh_C	PF03720.15	gi|408405138|ref|YP_006863121.1|	-	1.8e-19	70.1	0.0	6.8e-18	65.0	0.0	2.4	2	0	0	2	2	2	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	UDP	binding	domain
NAD_Gly3P_dh_N	PF01210.23	gi|408405138|ref|YP_006863121.1|	-	0.00046	20.2	0.0	0.89	9.5	0.0	2.5	2	0	0	2	2	2	2	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
NAD_binding_2	PF03446.15	gi|408405138|ref|YP_006863121.1|	-	0.0017	18.5	0.0	0.013	15.6	0.0	2.5	3	1	0	3	3	3	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
3HCDH_N	PF02737.18	gi|408405138|ref|YP_006863121.1|	-	0.0061	16.5	0.0	0.016	15.1	0.0	1.7	2	0	0	2	2	2	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
2-Hacid_dh_C	PF02826.19	gi|408405138|ref|YP_006863121.1|	-	0.017	14.5	0.0	0.062	12.7	0.0	1.9	1	0	0	1	1	1	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
F420_oxidored	PF03807.17	gi|408405138|ref|YP_006863121.1|	-	0.022	15.3	0.3	0.5	11.0	0.0	3.0	3	1	0	3	3	3	0	NADP	oxidoreductase	coenzyme	F420-dependent
TrkA_N	PF02254.18	gi|408405138|ref|YP_006863121.1|	-	0.056	13.7	0.0	0.21	11.8	0.0	2.0	1	0	0	1	1	1	0	TrkA-N	domain
XdhC_C	PF13478.6	gi|408405138|ref|YP_006863121.1|	-	0.07	13.6	0.0	0.14	12.7	0.0	1.5	1	0	0	1	1	1	0	XdhC	Rossmann	domain
Pyr_redox_2	PF07992.14	gi|408405138|ref|YP_006863121.1|	-	0.073	12.3	0.1	1.7	7.8	0.0	2.1	2	0	0	2	2	2	0	Pyridine	nucleotide-disulphide	oxidoreductase
ThiF	PF00899.21	gi|408405138|ref|YP_006863121.1|	-	0.092	12.1	0.1	0.72	9.1	0.0	2.1	2	0	0	2	2	2	0	ThiF	family
IF-2B	PF01008.17	gi|408405139|ref|YP_006863122.1|	-	1.8e-92	309.5	0.1	2.1e-92	309.3	0.1	1.0	1	0	0	1	1	1	1	Initiation	factor	2	subunit	family
MCPsignal	PF00015.21	gi|408405139|ref|YP_006863122.1|	-	0.069	13.0	0.5	0.14	12.0	0.1	1.6	2	0	0	2	2	2	0	Methyl-accepting	chemotaxis	protein	(MCP)	signalling	domain
FeS_assembly_P	PF01883.19	gi|408405140|ref|YP_006863123.1|	-	1.6e-16	60.2	0.1	3.4e-16	59.2	0.1	1.6	1	0	0	1	1	1	1	Iron-sulfur	cluster	assembly	protein
PqqD	PF05402.12	gi|408405140|ref|YP_006863123.1|	-	4.2e-09	36.6	0.1	8.2e-09	35.6	0.1	1.5	1	0	0	1	1	1	1	Coenzyme	PQQ	synthesis	protein	D	(PqqD)
Methyltransf_4	PF02390.17	gi|408405141|ref|YP_006863124.1|	-	4.2e-11	42.6	0.0	5.4e-11	42.3	0.0	1.1	1	0	0	1	1	1	1	Putative	methyltransferase
Methyltransf_25	PF13649.6	gi|408405141|ref|YP_006863124.1|	-	1.5e-09	38.4	0.0	2.3e-09	37.8	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_11	PF08241.12	gi|408405141|ref|YP_006863124.1|	-	3.2e-08	34.1	0.0	5.6e-08	33.3	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Glyco_hydro_67C	PF07477.12	gi|408405141|ref|YP_006863124.1|	-	0.0037	16.8	0.0	0.0049	16.4	0.0	1.2	1	0	0	1	1	1	1	Glycosyl	hydrolase	family	67	C-terminus
Methyltransf_12	PF08242.12	gi|408405141|ref|YP_006863124.1|	-	0.0038	17.9	0.0	0.01	16.5	0.0	1.8	2	0	0	2	2	2	1	Methyltransferase	domain
Methyltransf_33	PF10017.9	gi|408405141|ref|YP_006863124.1|	-	0.01	15.0	0.0	0.025	13.8	0.0	1.5	2	0	0	2	2	2	0	Histidine-specific	methyltransferase,	SAM-dependent
MTS	PF05175.14	gi|408405141|ref|YP_006863124.1|	-	0.027	14.0	0.0	0.034	13.7	0.0	1.1	1	0	0	1	1	1	0	Methyltransferase	small	domain
Spermine_synth	PF01564.17	gi|408405141|ref|YP_006863124.1|	-	0.076	12.4	0.0	0.3	10.5	0.0	1.8	1	1	0	1	1	1	0	Spermine/spermidine	synthase	domain
Methyltransf_23	PF13489.6	gi|408405141|ref|YP_006863124.1|	-	0.077	12.8	0.0	0.21	11.4	0.0	1.8	1	1	0	1	1	1	0	Methyltransferase	domain
MetW	PF07021.12	gi|408405141|ref|YP_006863124.1|	-	0.21	11.2	0.0	0.31	10.6	0.0	1.3	1	0	0	1	1	1	0	Methionine	biosynthesis	protein	MetW
zf-FCS	PF06467.14	gi|408405142|ref|YP_006863125.1|	-	0.003	17.5	6.4	0.0053	16.7	6.4	1.4	1	0	0	1	1	1	1	MYM-type	Zinc	finger	with	FCS	sequence	motif
zf-MYND	PF01753.18	gi|408405142|ref|YP_006863125.1|	-	0.072	13.2	8.6	0.12	12.5	8.6	1.4	1	0	0	1	1	1	0	MYND	finger
zf-C2H2_4	PF13894.6	gi|408405142|ref|YP_006863125.1|	-	0.075	13.9	9.8	4.5	8.4	3.8	2.8	2	0	0	2	2	2	0	C2H2-type	zinc	finger
zf-FLZ	PF04570.14	gi|408405142|ref|YP_006863125.1|	-	0.25	10.9	5.8	0.5	9.9	5.8	1.6	1	0	0	1	1	1	0	zinc-finger	of	the	FCS-type,	C2-C2
zf-C2H2_6	PF13912.6	gi|408405142|ref|YP_006863125.1|	-	0.44	10.6	0.4	0.44	10.6	0.4	2.3	2	0	0	2	2	2	0	C2H2-type	zinc	finger
VATC	PF18716.1	gi|408405142|ref|YP_006863125.1|	-	0.99	9.3	8.8	3.3	7.6	8.8	1.9	1	1	0	1	1	1	0	Vms1-associating	treble	clef	domain
zf-C2H2	PF00096.26	gi|408405142|ref|YP_006863125.1|	-	3.2	8.4	10.7	2.4	8.8	0.6	2.5	2	0	0	2	2	2	0	Zinc	finger,	C2H2	type
HGTP_anticodon	PF03129.20	gi|408405143|ref|YP_006863126.1|	-	9.5e-19	67.4	0.1	1.9e-18	66.4	0.1	1.5	1	0	0	1	1	1	1	Anticodon	binding	domain
tRNA-synt_2b	PF00587.25	gi|408405143|ref|YP_006863126.1|	-	3.4e-11	43.4	0.0	2.5e-10	40.6	0.0	2.3	1	1	0	1	1	1	1	tRNA	synthetase	class	II	core	domain	(G,	H,	P,	S	and	T)
Zn_ribbon_SprT	PF17283.2	gi|408405143|ref|YP_006863126.1|	-	0.016	15.1	0.7	0.32	10.9	0.0	2.4	2	0	0	2	2	2	0	SprT-like	zinc	ribbon	domain
zf-C2HE	PF16278.5	gi|408405143|ref|YP_006863126.1|	-	0.042	14.3	3.8	0.15	12.5	0.1	3.1	2	1	1	3	3	3	0	C2HE	/	C2H2	/	C2HC	zinc-binding	finger
Ribosomal_L33	PF00471.20	gi|408405143|ref|YP_006863126.1|	-	0.053	14.0	1.3	0.17	12.4	1.3	1.9	1	1	0	1	1	1	0	Ribosomal	protein	L33
zinc_ribbon_15	PF17032.5	gi|408405143|ref|YP_006863126.1|	-	0.08	13.7	0.2	0.24	12.2	0.1	1.9	2	0	0	2	2	2	0	zinc-ribbon	family
zf-C3HC	PF07967.13	gi|408405143|ref|YP_006863126.1|	-	0.085	12.9	0.0	0.17	11.9	0.0	1.4	1	0	0	1	1	1	0	C3HC	zinc	finger-like
zinc_ribbon_5	PF13719.6	gi|408405143|ref|YP_006863126.1|	-	0.23	11.2	4.0	0.99	9.2	0.2	2.9	3	0	0	3	3	3	0	zinc-ribbon	domain
zinc_ribbon_4	PF13717.6	gi|408405143|ref|YP_006863126.1|	-	0.3	11.0	5.8	3.2	7.7	0.8	3.0	3	0	0	3	3	3	0	zinc-ribbon	domain
TF_Zn_Ribbon	PF08271.12	gi|408405143|ref|YP_006863126.1|	-	0.36	10.4	1.9	20	4.8	0.1	2.5	2	0	0	2	2	2	0	TFIIB	zinc-binding
Aminotran_1_2	PF00155.21	gi|408405144|ref|YP_006863127.1|	-	5.7e-62	210.0	0.0	6.4e-62	209.8	0.0	1.0	1	0	0	1	1	1	1	Aminotransferase	class	I	and	II
Aminotran_5	PF00266.19	gi|408405144|ref|YP_006863127.1|	-	6.3e-05	22.1	0.0	0.00012	21.1	0.0	1.4	1	0	0	1	1	1	1	Aminotransferase	class-V
DegT_DnrJ_EryC1	PF01041.17	gi|408405144|ref|YP_006863127.1|	-	9.4e-05	21.9	0.0	0.00019	20.9	0.0	1.4	2	0	0	2	2	2	1	DegT/DnrJ/EryC1/StrS	aminotransferase	family
Alliinase_C	PF04864.13	gi|408405144|ref|YP_006863127.1|	-	0.0011	17.9	0.0	0.0033	16.4	0.0	1.7	2	0	0	2	2	2	1	Allinase
Beta_elim_lyase	PF01212.21	gi|408405144|ref|YP_006863127.1|	-	0.0031	16.8	0.0	0.006	15.9	0.0	1.4	1	0	0	1	1	1	1	Beta-eliminating	lyase
Cys_Met_Meta_PP	PF01053.20	gi|408405144|ref|YP_006863127.1|	-	0.016	13.8	0.0	0.025	13.1	0.0	1.2	1	0	0	1	1	1	0	Cys/Met	metabolism	PLP-dependent	enzyme
MFS_1	PF07690.16	gi|408405145|ref|YP_006863128.1|	-	3.9e-46	157.6	74.6	1e-41	143.1	46.8	2.0	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
TfoX_N	PF04993.13	gi|408405146|ref|YP_006863129.1|	-	9.2e-09	35.4	0.0	1.2e-08	35.0	0.0	1.3	1	0	0	1	1	1	1	TfoX	N-terminal	domain
HxlR	PF01638.17	gi|408405148|ref|YP_006863131.1|	-	2.6e-20	72.0	0.2	3e-20	71.8	0.2	1.1	1	0	0	1	1	1	1	HxlR-like	helix-turn-helix
PadR	PF03551.14	gi|408405148|ref|YP_006863131.1|	-	0.00061	19.7	0.0	0.00089	19.2	0.0	1.2	1	0	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
MarR	PF01047.22	gi|408405148|ref|YP_006863131.1|	-	0.0015	18.4	0.2	0.0025	17.7	0.2	1.5	2	0	0	2	2	2	1	MarR	family
HTH_12	PF08461.10	gi|408405148|ref|YP_006863131.1|	-	0.015	15.3	0.1	0.023	14.7	0.1	1.4	1	0	0	1	1	1	0	Ribonuclease	R	winged-helix	domain
Replic_Relax	PF13814.6	gi|408405148|ref|YP_006863131.1|	-	0.056	13.5	0.0	0.059	13.4	0.0	1.1	1	0	0	1	1	1	0	Replication-relaxation
HTH_45	PF14947.6	gi|408405148|ref|YP_006863131.1|	-	0.057	13.4	0.3	0.095	12.7	0.3	1.5	1	1	0	1	1	1	0	Winged	helix-turn-helix
HTH_34	PF13601.6	gi|408405148|ref|YP_006863131.1|	-	0.11	12.6	0.0	0.16	12.2	0.0	1.2	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
HTH_20	PF12840.7	gi|408405148|ref|YP_006863131.1|	-	0.17	12.0	0.0	0.31	11.2	0.0	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain
Polyketide_cyc2	PF10604.9	gi|408405149|ref|YP_006863132.1|	-	2.6e-19	69.9	0.0	2.9e-19	69.7	0.0	1.0	1	0	0	1	1	1	1	Polyketide	cyclase	/	dehydrase	and	lipid	transport
Polyketide_cyc	PF03364.20	gi|408405149|ref|YP_006863132.1|	-	0.13	12.5	0.0	0.14	12.3	0.0	1.3	1	1	0	1	1	1	0	Polyketide	cyclase	/	dehydrase	and	lipid	transport
Peptidase_M48	PF01435.18	gi|408405150|ref|YP_006863133.1|	-	3.7e-38	131.3	0.1	6e-38	130.6	0.0	1.3	2	0	0	2	2	2	1	Peptidase	family	M48
Peptidase_M56	PF05569.11	gi|408405150|ref|YP_006863133.1|	-	2.7e-09	36.6	0.7	2.4e-08	33.5	0.7	2.2	2	1	0	2	2	2	1	BlaR1	peptidase	M56
DUF2268	PF10026.9	gi|408405150|ref|YP_006863133.1|	-	0.08	12.5	0.0	0.13	11.9	0.0	1.2	1	0	0	1	1	1	0	Predicted	Zn-dependent	protease	(DUF2268)
DUF2207	PF09972.9	gi|408405150|ref|YP_006863133.1|	-	1.3	7.7	10.3	3.3	6.3	0.4	2.1	2	0	0	2	2	2	0	Predicted	membrane	protein	(DUF2207)
S4	PF01479.25	gi|408405152|ref|YP_006863135.1|	-	0.38	10.5	3.7	0.46	10.2	0.0	2.8	3	0	0	3	3	3	0	S4	domain
PspA_IM30	PF04012.12	gi|408405153|ref|YP_006863136.1|	-	8.3e-26	90.9	29.2	1e-25	90.6	29.2	1.1	1	0	0	1	1	1	1	PspA/IM30	family
Flagellin_C	PF00700.21	gi|408405153|ref|YP_006863136.1|	-	0.024	15.0	1.1	0.024	15.0	1.1	3.2	3	1	0	3	3	3	0	Bacterial	flagellin	C-terminal	helical	region
Snf7	PF03357.21	gi|408405153|ref|YP_006863136.1|	-	2.6	7.6	32.8	3.5e+02	0.7	32.8	2.7	1	1	0	1	1	1	0	Snf7
DUF4401	PF14351.6	gi|408405154|ref|YP_006863137.1|	-	0.0091	15.3	1.4	0.023	14.0	1.4	1.6	1	1	0	1	1	1	1	Domain	of	unknown	function	(DUF4401)
DUF3185	PF11381.8	gi|408405154|ref|YP_006863137.1|	-	0.11	12.6	0.0	0.11	12.6	0.0	1.8	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF3185)
DUF202	PF02656.15	gi|408405154|ref|YP_006863137.1|	-	0.11	12.9	2.9	0.9	10.0	3.2	1.9	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF202)
Gram_pos_anchor	PF00746.21	gi|408405154|ref|YP_006863137.1|	-	0.12	12.3	0.1	11	6.0	0.1	2.2	2	0	0	2	2	2	0	LPXTG	cell	wall	anchor	motif
F420_oxidored	PF03807.17	gi|408405155|ref|YP_006863138.1|	-	6.3e-14	52.3	0.0	1.2e-13	51.4	0.0	1.5	1	0	0	1	1	1	1	NADP	oxidoreductase	coenzyme	F420-dependent
Semialdhyde_dh	PF01118.24	gi|408405155|ref|YP_006863138.1|	-	0.094	13.2	0.0	0.15	12.5	0.0	1.4	1	0	0	1	1	1	0	Semialdehyde	dehydrogenase,	NAD	binding	domain
NAD_Gly3P_dh_N	PF01210.23	gi|408405155|ref|YP_006863138.1|	-	0.099	12.6	0.0	0.15	12.1	0.0	1.5	1	0	0	1	1	1	0	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
CorA	PF01544.18	gi|408405156|ref|YP_006863139.1|	-	1.8e-42	145.7	5.8	2.2e-42	145.4	5.8	1.0	1	0	0	1	1	1	1	CorA-like	Mg2+	transporter	protein
DUF2207	PF09972.9	gi|408405156|ref|YP_006863139.1|	-	0.007	15.2	0.2	0.0092	14.8	0.2	1.2	1	0	0	1	1	1	1	Predicted	membrane	protein	(DUF2207)
His_Phos_1	PF00300.22	gi|408405157|ref|YP_006863140.1|	-	4.4e-49	166.8	0.0	5.3e-49	166.6	0.0	1.0	1	0	0	1	1	1	1	Histidine	phosphatase	superfamily	(branch	1)
RSV_NS2	PF03113.14	gi|408405157|ref|YP_006863140.1|	-	0.12	12.4	0.0	0.3	11.1	0.0	1.7	2	0	0	2	2	2	0	Respiratory	synctial	virus	non-structural	protein	NS2
DUF1275	PF06912.11	gi|408405158|ref|YP_006863141.1|	-	0.022	14.7	0.6	0.025	14.5	0.6	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1275)
FeoB_associated	PF12669.7	gi|408405158|ref|YP_006863141.1|	-	0.055	13.9	0.2	0.46	10.9	0.0	2.1	2	0	0	2	2	2	0	FeoB-associated	Cys-rich	membrane	protein
COX2_TM	PF02790.15	gi|408405158|ref|YP_006863141.1|	-	0.064	13.4	2.0	0.067	13.4	0.0	1.8	2	0	0	2	2	2	0	Cytochrome	C	oxidase	subunit	II,	transmembrane	domain
LapA_dom	PF06305.11	gi|408405158|ref|YP_006863141.1|	-	2.5	8.0	6.3	0.57	10.0	2.4	1.8	1	1	1	2	2	2	0	Lipopolysaccharide	assembly	protein	A	domain
COX2	PF00116.20	gi|408405159|ref|YP_006863142.1|	-	8.1e-21	74.1	1.0	9e-17	61.1	0.0	2.1	1	1	1	2	2	2	2	Cytochrome	C	oxidase	subunit	II,	periplasmic	domain
Cupredoxin_1	PF13473.6	gi|408405159|ref|YP_006863142.1|	-	1.3e-06	28.4	0.0	1.8e-06	28.0	0.0	1.3	1	0	0	1	1	1	1	Cupredoxin-like	domain
COX1	PF00115.20	gi|408405160|ref|YP_006863143.1|	-	7.6e-134	446.8	66.9	8.9e-134	446.6	66.9	1.0	1	0	0	1	1	1	1	Cytochrome	C	and	Quinol	oxidase	polypeptide	I
DUF4668	PF15701.5	gi|408405160|ref|YP_006863143.1|	-	0.4	10.5	0.1	0.4	10.5	0.1	2.4	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF4668)
Copper-bind	PF00127.20	gi|408405161|ref|YP_006863144.1|	-	1.1e-14	54.7	0.1	3.7e-09	36.9	0.0	2.3	2	0	0	2	2	2	2	Copper	binding	proteins,	plastocyanin/azurin	family
Cupredoxin_1	PF13473.6	gi|408405161|ref|YP_006863144.1|	-	1.3e-13	50.9	0.0	1.8e-10	40.9	0.0	2.4	2	0	0	2	2	2	2	Cupredoxin-like	domain
COX15-CtaA	PF02628.15	gi|408405162|ref|YP_006863145.1|	-	7.2e-20	71.3	12.8	2.4e-13	49.9	6.2	2.0	1	1	1	2	2	2	2	Cytochrome	oxidase	assembly	protein
Fe-ADH	PF00465.19	gi|408405164|ref|YP_006863147.1|	-	1.3e-50	172.3	0.0	5.9e-50	170.1	0.0	1.8	1	1	1	2	2	2	1	Iron-containing	alcohol	dehydrogenase
Fe-ADH_2	PF13685.6	gi|408405164|ref|YP_006863147.1|	-	2.1e-16	60.4	0.0	2.8e-16	60.0	0.0	1.2	1	0	0	1	1	1	1	Iron-containing	alcohol	dehydrogenase
PFK	PF00365.20	gi|408405164|ref|YP_006863147.1|	-	0.0059	16.0	0.0	0.009	15.4	0.0	1.2	1	0	0	1	1	1	1	Phosphofructokinase
DHQ_synthase	PF01761.20	gi|408405164|ref|YP_006863147.1|	-	0.032	13.4	0.1	2.8	7.0	0.0	2.2	2	0	0	2	2	2	0	3-dehydroquinate	synthase
Polyketide_cyc2	PF10604.9	gi|408405165|ref|YP_006863148.1|	-	7.6e-12	45.7	0.0	9.3e-12	45.4	0.0	1.1	1	0	0	1	1	1	1	Polyketide	cyclase	/	dehydrase	and	lipid	transport
AHSA1	PF08327.11	gi|408405165|ref|YP_006863148.1|	-	1.3e-08	35.1	0.0	1.8e-08	34.6	0.0	1.2	1	0	0	1	1	1	1	Activator	of	Hsp90	ATPase	homolog	1-like	protein
Polyketide_cyc	PF03364.20	gi|408405165|ref|YP_006863148.1|	-	1.2e-06	28.8	0.0	1.8e-06	28.2	0.0	1.3	1	0	0	1	1	1	1	Polyketide	cyclase	/	dehydrase	and	lipid	transport
DUF3213	PF11491.8	gi|408405166|ref|YP_006863149.1|	-	0.083	13.1	0.0	0.11	12.7	0.0	1.3	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF3213)
DUF72	PF01904.18	gi|408405169|ref|YP_006863152.1|	-	5.1e-13	49.6	0.4	6.9e-13	49.2	0.4	1.5	1	1	0	1	1	1	1	Protein	of	unknown	function	DUF72
Phage_int_SAM_1	PF02899.17	gi|408405169|ref|YP_006863152.1|	-	0.012	15.9	0.1	5.2	7.4	0.0	2.6	1	1	0	2	2	2	0	Phage	integrase,	N-terminal	SAM-like	domain
Phage_int_SAM_4	PF13495.6	gi|408405169|ref|YP_006863152.1|	-	0.044	14.3	0.2	15	6.1	0.0	2.5	2	0	0	2	2	2	0	Phage	integrase,	N-terminal	SAM-like	domain
HTH_45	PF14947.6	gi|408405171|ref|YP_006863154.1|	-	0.018	15.0	0.2	0.018	15.0	0.2	1.0	1	0	0	1	1	1	0	Winged	helix-turn-helix
Dodecin	PF07311.12	gi|408405172|ref|YP_006863155.1|	-	4.6e-21	74.8	0.3	5.9e-21	74.5	0.3	1.1	1	0	0	1	1	1	1	Dodecin
Thiamine_BP	PF01910.17	gi|408405173|ref|YP_006863156.1|	-	2.2e-25	88.4	0.8	2.4e-25	88.2	0.8	1.0	1	0	0	1	1	1	1	Thiamine-binding	protein
Bac_luciferase	PF00296.20	gi|408405174|ref|YP_006863157.1|	-	1.1e-48	166.3	0.0	1.3e-48	166.0	0.0	1.1	1	0	0	1	1	1	1	Luciferase-like	monooxygenase
Usp	PF00582.26	gi|408405175|ref|YP_006863158.1|	-	2.9e-30	105.6	1.8	5.6e-30	104.7	1.8	1.5	1	1	0	1	1	1	1	Universal	stress	protein	family
Toprim_4	PF13662.6	gi|408405175|ref|YP_006863158.1|	-	0.028	14.9	0.1	0.082	13.4	0.1	1.8	2	0	0	2	2	2	0	Toprim	domain
DUF294_C	PF10335.9	gi|408405175|ref|YP_006863158.1|	-	0.082	12.7	0.4	0.16	11.8	0.2	1.5	2	0	0	2	2	2	0	Putative	nucleotidyltransferase	substrate	binding	domain
HSP20	PF00011.21	gi|408405176|ref|YP_006863159.1|	-	0.0011	19.1	0.1	0.0017	18.5	0.1	1.3	1	0	0	1	1	1	1	Hsp20/alpha	crystallin	family
HSP20	PF00011.21	gi|408405177|ref|YP_006863160.1|	-	3.6e-08	33.5	0.0	3.6e-08	33.5	0.0	1.0	1	0	0	1	1	1	1	Hsp20/alpha	crystallin	family
ArsA_HSP20	PF17886.1	gi|408405177|ref|YP_006863160.1|	-	0.0002	20.8	0.0	0.00028	20.4	0.0	1.3	1	0	0	1	1	1	1	HSP20-like	domain	found	in	ArsA
DOMON	PF03351.17	gi|408405177|ref|YP_006863160.1|	-	0.14	12.4	0.0	0.14	12.4	0.0	1.0	1	0	0	1	1	1	0	DOMON	domain
zf-C2H2_2	PF12756.7	gi|408405178|ref|YP_006863161.1|	-	0.0062	16.9	0.2	0.0095	16.2	0.2	1.3	1	0	0	1	1	1	1	C2H2	type	zinc-finger	(2	copies)
zf-C2H2_4	PF13894.6	gi|408405178|ref|YP_006863161.1|	-	0.0078	17.0	0.1	0.015	16.0	0.1	1.5	1	0	0	1	1	1	1	C2H2-type	zinc	finger
Afaf	PF15339.6	gi|408405178|ref|YP_006863161.1|	-	0.011	15.5	0.2	0.018	14.8	0.2	1.3	1	0	0	1	1	1	0	Acrosome	formation-associated	factor
zf-C2H2	PF00096.26	gi|408405178|ref|YP_006863161.1|	-	0.062	13.8	0.4	0.11	13.0	0.4	1.4	1	0	0	1	1	1	0	Zinc	finger,	C2H2	type
zf-C2H2_jaz	PF12171.8	gi|408405178|ref|YP_006863161.1|	-	0.081	13.2	0.8	0.13	12.6	0.8	1.3	1	0	0	1	1	1	0	Zinc-finger	double-stranded	RNA-binding
zf-C2H2_6	PF13912.6	gi|408405178|ref|YP_006863161.1|	-	0.2	11.7	0.1	0.33	11.0	0.1	1.4	1	0	0	1	1	1	0	C2H2-type	zinc	finger
DUF1440	PF07274.12	gi|408405178|ref|YP_006863161.1|	-	0.3	11.4	5.2	0.25	11.7	1.0	2.3	1	1	2	3	3	3	0	Protein	of	unknown	function	(DUF1440)
zf-H2C2_2	PF13465.6	gi|408405178|ref|YP_006863161.1|	-	0.48	11.0	0.2	0.48	11.0	0.2	2.3	3	0	0	3	3	3	0	Zinc-finger	double	domain
KGG	PF10685.9	gi|408405179|ref|YP_006863162.1|	-	0.00026	21.2	8.8	0.00048	20.3	0.2	2.8	2	1	1	3	3	3	2	Stress-induced	bacterial	acidophilic	repeat	motif
zf_ZIC	PF18366.1	gi|408405180|ref|YP_006863163.1|	-	0.0068	16.5	0.0	0.0093	16.0	0.0	1.2	1	0	0	1	1	1	1	Zic	proteins	zinc	finger	domain
Antimicrobial10	PF08105.11	gi|408405181|ref|YP_006863164.1|	-	0.045	13.8	0.0	0.051	13.7	0.0	1.1	1	0	0	1	1	1	0	Metchnikowin	family
Abhydrolase_1	PF00561.20	gi|408405183|ref|YP_006863166.1|	-	1.5e-13	51.0	0.1	3.9e-12	46.4	0.1	2.2	1	1	0	1	1	1	1	alpha/beta	hydrolase	fold
Hydrolase_4	PF12146.8	gi|408405183|ref|YP_006863166.1|	-	5.4e-10	39.0	0.0	0.00068	19.0	0.0	2.2	2	0	0	2	2	2	2	Serine	aminopeptidase,	S33
Abhydrolase_6	PF12697.7	gi|408405183|ref|YP_006863166.1|	-	1.8e-07	32.0	0.0	3e-07	31.3	0.0	1.3	1	0	0	1	1	1	1	Alpha/beta	hydrolase	family
DLH	PF01738.18	gi|408405183|ref|YP_006863166.1|	-	2e-07	30.8	0.0	4.9e-05	23.0	0.0	2.4	2	0	0	2	2	2	2	Dienelactone	hydrolase	family
FSH1	PF03959.13	gi|408405183|ref|YP_006863166.1|	-	1.7e-05	24.6	0.2	0.001	18.8	0.0	3.1	2	1	1	3	3	3	1	Serine	hydrolase	(FSH1)
PhaC_N	PF07167.13	gi|408405183|ref|YP_006863166.1|	-	0.00012	21.8	0.1	0.00025	20.7	0.1	1.5	1	0	0	1	1	1	1	Poly-beta-hydroxybutyrate	polymerase	(PhaC)	N-terminus
DUF3141	PF11339.8	gi|408405183|ref|YP_006863166.1|	-	0.0036	15.8	0.2	0.0094	14.4	0.0	1.8	2	1	0	2	2	2	1	Protein	of	unknown	function	(DUF3141)
Abhydrolase_5	PF12695.7	gi|408405183|ref|YP_006863166.1|	-	0.041	13.6	0.0	11	5.7	0.0	2.3	2	0	0	2	2	2	0	Alpha/beta	hydrolase	family
DUF2532	PF10811.8	gi|408405183|ref|YP_006863166.1|	-	0.048	13.7	0.5	0.11	12.5	0.5	1.6	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2532)
BAAT_C	PF08840.11	gi|408405183|ref|YP_006863166.1|	-	0.12	12.3	0.0	0.35	10.8	0.0	1.8	2	0	0	2	2	2	0	BAAT	/	Acyl-CoA	thioester	hydrolase	C	terminal
Cpn60_TCP1	PF00118.24	gi|408405184|ref|YP_006863167.1|	-	1.8e-177	590.9	16.4	2.1e-177	590.7	16.4	1.0	1	0	0	1	1	1	1	TCP-1/cpn60	chaperonin	family
DUF3088	PF11287.8	gi|408405184|ref|YP_006863167.1|	-	0.095	12.5	0.0	0.33	10.7	0.0	1.9	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3088)
MutS_V	PF00488.21	gi|408405186|ref|YP_006863169.1|	-	0.017	15.2	0.0	0.018	15.1	0.0	1.0	1	0	0	1	1	1	0	MutS	domain	V
RWP-RK	PF02042.15	gi|408405187|ref|YP_006863170.1|	-	0.19	11.7	0.0	0.31	11.1	0.0	1.2	1	0	0	1	1	1	0	RWP-RK	domain
IU_nuc_hydro	PF01156.19	gi|408405188|ref|YP_006863171.1|	-	1.1e-66	225.5	0.0	1.2e-66	225.3	0.0	1.0	1	0	0	1	1	1	1	Inosine-uridine	preferring	nucleoside	hydrolase
PfkB	PF00294.24	gi|408405189|ref|YP_006863172.1|	-	1.6e-42	145.9	0.1	1.9e-42	145.6	0.1	1.0	1	0	0	1	1	1	1	pfkB	family	carbohydrate	kinase
Phos_pyr_kin	PF08543.12	gi|408405189|ref|YP_006863172.1|	-	0.058	12.8	0.0	0.11	11.8	0.0	1.6	1	0	0	1	1	1	0	Phosphomethylpyrimidine	kinase
Fer4	PF00037.27	gi|408405191|ref|YP_006863174.1|	-	3.8e-09	36.0	11.0	6.6e-06	25.7	0.9	2.3	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_7	PF12838.7	gi|408405191|ref|YP_006863174.1|	-	1.6e-08	35.0	4.8	0.00021	21.8	0.5	2.5	2	1	1	3	3	3	3	4Fe-4S	dicluster	domain
Fer4_10	PF13237.6	gi|408405191|ref|YP_006863174.1|	-	1.4e-07	31.5	15.9	7.7e-07	29.1	6.1	1.9	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_8	PF13183.6	gi|408405191|ref|YP_006863174.1|	-	3.3e-07	30.6	0.4	0.01	16.3	0.1	2.3	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_9	PF13187.6	gi|408405191|ref|YP_006863174.1|	-	4.2e-07	30.0	6.8	4.1e-06	26.9	7.5	2.1	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_16	PF13484.6	gi|408405191|ref|YP_006863174.1|	-	7.6e-07	30.0	14.9	3.3e-05	24.7	6.4	2.4	1	1	1	2	2	2	2	4Fe-4S	double	cluster	binding	domain
Fer4_13	PF13370.6	gi|408405191|ref|YP_006863174.1|	-	5.8e-06	26.7	5.8	0.0073	16.8	0.2	2.7	3	0	0	3	3	3	2	4Fe-4S	single	cluster	domain	of	Ferredoxin	I
Fer4_17	PF13534.6	gi|408405191|ref|YP_006863174.1|	-	1.9e-05	25.1	5.3	0.00054	20.4	7.0	2.2	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_6	PF12837.7	gi|408405191|ref|YP_006863174.1|	-	2.8e-05	24.0	11.4	0.03	14.4	0.9	2.4	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_21	PF14697.6	gi|408405191|ref|YP_006863174.1|	-	3.1e-05	24.0	8.9	0.0053	16.8	9.1	2.3	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_4	PF12800.7	gi|408405191|ref|YP_006863174.1|	-	0.00022	21.5	6.2	0.039	14.4	1.3	2.5	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_2	PF12797.7	gi|408405191|ref|YP_006863174.1|	-	0.0003	20.7	10.3	0.058	13.5	3.6	2.5	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_18	PF13746.6	gi|408405191|ref|YP_006863174.1|	-	0.0012	19.1	7.1	0.0017	18.6	5.1	2.1	1	1	1	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_22	PF17179.4	gi|408405191|ref|YP_006863174.1|	-	0.0056	17.5	0.4	4.6	8.2	0.0	2.3	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_15	PF13459.6	gi|408405191|ref|YP_006863174.1|	-	0.0071	17.1	8.8	0.17	12.7	2.8	2.7	2	1	0	2	2	2	2	4Fe-4S	single	cluster	domain
Fer4_3	PF12798.7	gi|408405191|ref|YP_006863174.1|	-	0.11	13.4	13.7	1.9	9.6	6.4	2.4	2	0	0	2	2	2	0	4Fe-4S	binding	domain
HsbA	PF12296.8	gi|408405192|ref|YP_006863175.1|	-	0.036	14.5	0.1	0.048	14.1	0.1	1.2	1	0	0	1	1	1	0	Hydrophobic	surface	binding	protein	A
HTH_45	PF14947.6	gi|408405194|ref|YP_006863177.1|	-	1.7e-23	82.3	2.1	2e-23	82.2	2.1	1.0	1	0	0	1	1	1	1	Winged	helix-turn-helix
DUF4364	PF14277.6	gi|408405194|ref|YP_006863177.1|	-	5.9e-05	22.9	0.3	6.4e-05	22.7	0.3	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4364)
HTH_27	PF13463.6	gi|408405194|ref|YP_006863177.1|	-	0.0036	17.7	0.0	0.0049	17.3	0.0	1.2	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
Response_reg	PF00072.24	gi|408405195|ref|YP_006863178.1|	-	1.6e-19	70.1	0.3	1.8e-19	70.0	0.3	1.0	1	0	0	1	1	1	1	Response	regulator	receiver	domain
Putative_PNPOx	PF01243.20	gi|408405196|ref|YP_006863179.1|	-	2.5e-14	53.2	0.0	3.3e-14	52.8	0.0	1.2	1	0	0	1	1	1	1	Pyridoxamine	5'-phosphate	oxidase
Pyridox_ox_2	PF12900.7	gi|408405196|ref|YP_006863179.1|	-	1e-12	48.2	0.0	1.2e-12	48.0	0.0	1.0	1	0	0	1	1	1	1	Pyridoxamine	5'-phosphate	oxidase
Pyrid_ox_like	PF16242.5	gi|408405196|ref|YP_006863179.1|	-	0.001	18.7	0.1	0.0013	18.3	0.1	1.1	1	0	0	1	1	1	1	Pyridoxamine	5'-phosphate	oxidase	like
Pyridox_oxase_2	PF12766.7	gi|408405196|ref|YP_006863179.1|	-	0.016	15.8	0.0	0.026	15.1	0.0	1.4	1	0	0	1	1	1	0	Pyridoxamine	5'-phosphate	oxidase
DUF3578	PF12102.8	gi|408405196|ref|YP_006863179.1|	-	0.019	14.6	0.0	0.024	14.2	0.0	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3578)
DUF447	PF04289.12	gi|408405196|ref|YP_006863179.1|	-	0.062	13.1	0.1	0.071	12.9	0.1	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF447)
Pyrid_oxidase_2	PF13883.6	gi|408405196|ref|YP_006863179.1|	-	0.099	12.6	0.0	0.11	12.4	0.0	1.2	1	0	0	1	1	1	0	Pyridoxamine	5'-phosphate	oxidase
zf-C2H2_4	PF13894.6	gi|408405197|ref|YP_006863180.1|	-	0.0033	18.1	0.2	0.0065	17.2	0.2	1.5	1	0	0	1	1	1	1	C2H2-type	zinc	finger
zf-C2H2	PF00096.26	gi|408405197|ref|YP_006863180.1|	-	0.029	14.8	0.2	0.059	13.8	0.2	1.6	1	0	0	1	1	1	0	Zinc	finger,	C2H2	type
DUF2171	PF09939.9	gi|408405197|ref|YP_006863180.1|	-	0.036	14.3	0.3	0.062	13.6	0.3	1.4	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2171)
DUF4157	PF13699.6	gi|408405203|ref|YP_006863186.1|	-	0.087	13.1	0.0	0.15	12.3	0.0	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4157)
HTH_45	PF14947.6	gi|408405204|ref|YP_006863187.1|	-	2e-13	50.1	0.1	2.5e-13	49.8	0.1	1.1	1	0	0	1	1	1	1	Winged	helix-turn-helix
DUF1495	PF07381.11	gi|408405204|ref|YP_006863187.1|	-	0.068	13.0	0.0	0.11	12.4	0.0	1.3	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain	(DUF1495)
Rubrerythrin	PF02915.17	gi|408405205|ref|YP_006863188.1|	-	0.0014	19.0	0.3	0.0016	18.9	0.3	1.1	1	0	0	1	1	1	1	Rubrerythrin
Phe_tRNA-synt_N	PF02912.18	gi|408405205|ref|YP_006863188.1|	-	0.0028	17.5	0.5	0.0042	17.0	0.5	1.2	1	0	0	1	1	1	1	Aminoacyl	tRNA	synthetase	class	II,	N-terminal	domain
Ferritin	PF00210.24	gi|408405205|ref|YP_006863188.1|	-	0.023	14.6	0.9	0.026	14.4	0.9	1.1	1	0	0	1	1	1	0	Ferritin-like	domain
Ferritin_2	PF13668.6	gi|408405205|ref|YP_006863188.1|	-	0.038	14.2	0.1	0.043	14.0	0.1	1.2	1	0	0	1	1	1	0	Ferritin-like	domain
HEM4	PF02602.15	gi|408405206|ref|YP_006863189.1|	-	1.2e-47	162.2	0.3	1.4e-47	162.0	0.3	1.0	1	0	0	1	1	1	1	Uroporphyrinogen-III	synthase	HemD
Nitro_FeMo-Co	PF02579.17	gi|408405206|ref|YP_006863189.1|	-	0.029	14.7	0.0	7.3	7.0	0.0	3.3	3	0	0	3	3	3	0	Dinitrogenase	iron-molybdenum	cofactor
NMT1	PF09084.11	gi|408405206|ref|YP_006863189.1|	-	0.053	13.4	0.0	1.6	8.6	0.0	2.6	2	1	0	2	2	2	0	NMT1/THI5	like
TP_methylase	PF00590.20	gi|408405207|ref|YP_006863190.1|	-	1.7e-51	175.2	0.3	2e-51	175.0	0.3	1.0	1	0	0	1	1	1	1	Tetrapyrrole	(Corrin/Porphyrin)	Methylases
Porphobil_deam	PF01379.20	gi|408405208|ref|YP_006863191.1|	-	2.9e-71	239.2	0.0	3.9e-71	238.8	0.0	1.2	1	0	0	1	1	1	1	Porphobilinogen	deaminase,	dipyromethane	cofactor	binding	domain
Porphobil_deamC	PF03900.15	gi|408405208|ref|YP_006863191.1|	-	8.7e-17	61.3	0.1	2.6e-16	59.7	0.1	1.9	1	0	0	1	1	1	1	Porphobilinogen	deaminase,	C-terminal	domain
LysR_substrate	PF03466.20	gi|408405208|ref|YP_006863191.1|	-	0.078	12.3	0.0	9.1	5.6	0.0	2.6	2	1	0	2	2	2	0	LysR	substrate	binding	domain
Aminotran_3	PF00202.21	gi|408405209|ref|YP_006863192.1|	-	1.6e-62	211.5	0.2	1.9e-62	211.2	0.2	1.0	1	0	0	1	1	1	1	Aminotransferase	class-III
Aminotran_1_2	PF00155.21	gi|408405209|ref|YP_006863192.1|	-	1.6e-06	27.6	0.0	2.3e-06	27.0	0.0	1.3	1	0	0	1	1	1	1	Aminotransferase	class	I	and	II
DUF3108	PF11306.8	gi|408405211|ref|YP_006863194.1|	-	0.00083	19.4	0.5	0.0029	17.6	0.2	1.8	1	1	1	2	2	2	1	Protein	of	unknown	function	(DUF3108)
HTH_45	PF14947.6	gi|408405212|ref|YP_006863195.1|	-	1.4e-20	73.0	2.6	1.6e-20	72.9	2.6	1.0	1	0	0	1	1	1	1	Winged	helix-turn-helix
DUF4364	PF14277.6	gi|408405212|ref|YP_006863195.1|	-	1.8e-05	24.5	1.1	2.5e-05	24.1	1.0	1.4	1	1	0	1	1	1	1	Domain	of	unknown	function	(DUF4364)
Cytokin-bind	PF09265.10	gi|408405212|ref|YP_006863195.1|	-	0.089	12.2	0.1	0.1	12.0	0.1	1.1	1	0	0	1	1	1	0	Cytokinin	dehydrogenase	1,	FAD	and	cytokinin	binding
MetOD2	PF18548.1	gi|408405212|ref|YP_006863195.1|	-	0.1	12.7	0.4	0.45	10.6	0.2	1.8	1	1	1	2	2	2	0	Metanogen	output	domain	2
HTH_27	PF13463.6	gi|408405212|ref|YP_006863195.1|	-	0.15	12.6	0.1	0.21	12.1	0.1	1.2	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
HisKA_3	PF07730.13	gi|408405213|ref|YP_006863196.1|	-	0.025	15.1	9.9	0.32	11.5	0.4	3.1	1	1	2	3	3	3	0	Histidine	kinase
Phage-MuB_C	PF09077.11	gi|408405213|ref|YP_006863196.1|	-	0.048	13.5	0.5	0.048	13.5	0.5	1.9	1	1	1	2	2	2	0	Mu	B	transposition	protein,	C	terminal
UPF0181	PF03701.14	gi|408405213|ref|YP_006863196.1|	-	0.053	13.2	0.8	0.053	13.2	0.8	2.9	2	1	1	3	3	3	0	Uncharacterised	protein	family	(UPF0181)
Laminin_II	PF06009.12	gi|408405213|ref|YP_006863196.1|	-	0.061	13.3	6.1	0.17	11.9	6.1	1.7	1	1	0	1	1	1	0	Laminin	Domain	II
Hypoth_Ymh	PF09509.10	gi|408405213|ref|YP_006863196.1|	-	0.11	12.3	4.3	0.33	10.9	0.9	2.0	1	1	1	2	2	2	0	Protein	of	unknown	function	(Hypoth_ymh)
CLP1_P	PF16575.5	gi|408405213|ref|YP_006863196.1|	-	0.16	11.7	0.8	0.26	11.0	0.8	1.3	1	1	0	1	1	1	0	mRNA	cleavage	and	polyadenylation	factor	CLP1	P-loop
DUF2250	PF10007.9	gi|408405213|ref|YP_006863196.1|	-	0.24	11.6	1.6	6.5	6.9	0.2	2.4	1	1	1	2	2	2	0	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
TPR_MLP1_2	PF07926.12	gi|408405213|ref|YP_006863196.1|	-	0.46	10.5	8.8	1.3	9.1	8.8	1.7	1	1	0	1	1	1	0	TPR/MLP1/MLP2-like	protein
REF	PF05755.12	gi|408405213|ref|YP_006863196.1|	-	0.49	10.2	3.1	0.8	9.5	2.0	1.7	1	1	1	2	2	2	0	Rubber	elongation	factor	protein	(REF)
YtxH	PF12732.7	gi|408405213|ref|YP_006863196.1|	-	1.6	9.3	9.5	1.8e+02	2.7	9.5	2.5	1	1	0	1	1	1	0	YtxH-like	protein
DivIVA	PF05103.13	gi|408405213|ref|YP_006863196.1|	-	5.8	7.0	12.9	7.1	6.7	7.7	2.2	1	1	1	2	2	2	0	DivIVA	protein
DUF948	PF06103.11	gi|408405214|ref|YP_006863197.1|	-	0.0028	17.9	4.9	2.3	8.5	1.6	3.4	1	1	1	2	2	2	1	Bacterial	protein	of	unknown	function	(DUF948)
SKA2	PF16740.5	gi|408405214|ref|YP_006863197.1|	-	0.003	17.3	2.7	0.92	9.3	0.3	2.9	1	1	1	2	2	2	2	Spindle	and	kinetochore-associated	protein	2
HisKA	PF00512.25	gi|408405214|ref|YP_006863197.1|	-	0.0051	16.8	1.7	0.66	10.1	0.2	3.3	1	1	2	3	3	3	1	His	Kinase	A	(phospho-acceptor)	domain
PLU-1	PF08429.11	gi|408405214|ref|YP_006863197.1|	-	0.0061	15.8	0.5	0.02	14.0	0.3	1.7	1	1	0	1	1	1	1	PLU-1-like	protein
Rx_N	PF18052.1	gi|408405214|ref|YP_006863197.1|	-	0.011	15.9	4.5	1.5	9.2	0.2	3.2	1	1	1	2	2	2	0	Rx	N-terminal	domain
Apolipoprotein	PF01442.18	gi|408405214|ref|YP_006863197.1|	-	0.012	15.5	3.5	0.049	13.5	2.0	2.1	1	1	0	1	1	1	0	Apolipoprotein	A1/A4/E	domain
DUF5344	PF17279.2	gi|408405214|ref|YP_006863197.1|	-	0.013	16.1	1.8	1.3	9.7	0.0	2.4	1	1	0	2	2	2	0	Family	of	unknown	function	(DUF5344)
DUF4363	PF14276.6	gi|408405214|ref|YP_006863197.1|	-	0.018	15.1	1.3	0.037	14.1	0.3	1.9	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4363)
Syntaxin_2	PF14523.6	gi|408405214|ref|YP_006863197.1|	-	0.019	15.3	2.3	2.7	8.4	2.3	2.8	1	1	0	1	1	1	0	Syntaxin-like	protein
ApoLp-III	PF07464.11	gi|408405214|ref|YP_006863197.1|	-	0.02	15.0	4.5	0.22	11.6	1.8	2.4	1	1	1	2	2	2	0	Apolipophorin-III	precursor	(apoLp-III)
DUF2203	PF09969.9	gi|408405214|ref|YP_006863197.1|	-	0.03	15.1	5.4	0.099	13.4	2.3	2.5	1	1	1	2	2	2	0	Uncharacterized	conserved	protein	(DUF2203)
YlbD_coat	PF14071.6	gi|408405214|ref|YP_006863197.1|	-	0.032	14.5	0.5	6.8	7.0	0.2	2.3	1	1	1	2	2	2	0	Putative	coat	protein
YkyA	PF10368.9	gi|408405214|ref|YP_006863197.1|	-	0.033	13.9	7.9	0.18	11.5	7.0	2.2	1	1	0	1	1	1	0	Putative	cell-wall	binding	lipoprotein
DHC_N2	PF08393.13	gi|408405214|ref|YP_006863197.1|	-	0.033	13.3	0.3	0.053	12.6	0.2	1.4	1	1	0	1	1	1	0	Dynein	heavy	chain,	N-terminal	region	2
Coa1	PF08695.10	gi|408405214|ref|YP_006863197.1|	-	0.034	13.9	0.2	0.07	12.9	0.1	1.5	2	0	0	2	2	2	0	Cytochrome	oxidase	complex	assembly	protein	1
Phage_HK97_TLTM	PF06120.11	gi|408405214|ref|YP_006863197.1|	-	0.039	13.1	4.9	0.15	11.2	4.9	1.9	1	1	0	1	1	1	0	Tail	length	tape	measure	protein
Med9	PF07544.13	gi|408405214|ref|YP_006863197.1|	-	0.058	13.5	1.7	0.34	11.0	0.5	2.6	1	1	1	2	2	2	0	RNA	polymerase	II	transcription	mediator	complex	subunit	9
Focal_AT	PF03623.13	gi|408405214|ref|YP_006863197.1|	-	0.06	13.3	1.1	0.11	12.5	1.1	1.5	1	1	0	1	1	1	0	Focal	adhesion	targeting	region
YtxH	PF12732.7	gi|408405214|ref|YP_006863197.1|	-	0.066	13.8	6.7	0.85	10.2	0.2	3.0	2	1	0	2	2	2	0	YtxH-like	protein
DUF2120	PF09893.9	gi|408405214|ref|YP_006863197.1|	-	0.069	13.2	4.3	2	8.5	1.5	2.1	2	0	0	2	2	2	0	Uncharacterized	protein	conserved	in	archaea	(DUF2120)
WXG100	PF06013.12	gi|408405214|ref|YP_006863197.1|	-	0.085	13.1	1.9	32	4.9	0.1	3.7	2	1	1	4	4	3	0	Proteins	of	100	residues	with	WXG
CHASE3	PF05227.13	gi|408405214|ref|YP_006863197.1|	-	0.085	12.8	3.6	0.23	11.4	2.9	2.2	1	1	1	2	2	2	0	CHASE3	domain
DUF1664	PF07889.12	gi|408405214|ref|YP_006863197.1|	-	0.086	12.9	5.3	0.29	11.2	1.1	2.5	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF1664)
PDH	PF02153.17	gi|408405214|ref|YP_006863197.1|	-	0.097	11.7	1.8	2.1	7.3	0.0	2.4	2	1	1	3	3	3	0	Prephenate	dehydrogenase
DUF16	PF01519.16	gi|408405214|ref|YP_006863197.1|	-	0.11	12.9	2.8	0.76	10.3	1.5	2.3	1	1	1	2	2	2	0	Protein	of	unknown	function	DUF16
D5_N	PF08706.11	gi|408405214|ref|YP_006863197.1|	-	0.14	12.4	1.1	0.39	11.0	1.1	1.8	1	1	0	1	1	1	0	D5	N	terminal	like
Fib_alpha	PF08702.10	gi|408405214|ref|YP_006863197.1|	-	0.19	11.9	2.8	0.66	10.2	0.5	2.4	1	1	1	2	2	2	0	Fibrinogen	alpha/beta	chain	family
HisKA_3	PF07730.13	gi|408405214|ref|YP_006863197.1|	-	0.29	11.7	7.4	56	4.4	0.5	4.8	1	1	4	5	5	5	0	Histidine	kinase
Baculo_p24	PF05073.12	gi|408405214|ref|YP_006863197.1|	-	0.32	10.8	2.7	4.9	6.9	0.9	2.2	1	1	0	2	2	2	0	Baculovirus	P24	capsid	protein
MnmE_helical	PF12631.7	gi|408405214|ref|YP_006863197.1|	-	0.43	10.7	3.8	0.69	10.0	3.8	1.5	1	1	0	1	1	1	0	MnmE	helical	domain
eIF3_N	PF09440.10	gi|408405214|ref|YP_006863197.1|	-	0.61	10.5	3.3	1.5	9.3	1.1	2.3	1	1	2	3	3	3	0	eIF3	subunit	6	N	terminal	domain
DUF883	PF05957.13	gi|408405214|ref|YP_006863197.1|	-	0.77	10.4	5.1	8.1	7.1	0.1	3.1	1	1	2	3	3	3	0	Bacterial	protein	of	unknown	function	(DUF883)
Latarcin	PF10279.9	gi|408405214|ref|YP_006863197.1|	-	0.98	9.9	5.8	4.7	7.7	4.7	2.6	1	1	1	2	2	2	0	Latarcin	precursor
TMPIT	PF07851.13	gi|408405214|ref|YP_006863197.1|	-	1.3	8.2	3.2	2.2	7.4	0.7	1.7	1	1	1	2	2	2	0	TMPIT-like	protein
COG2	PF06148.11	gi|408405214|ref|YP_006863197.1|	-	4.3	7.4	5.6	29	4.7	3.6	2.8	1	1	1	2	2	2	0	COG	(conserved	oligomeric	Golgi)	complex	component,	COG2
EVE	PF01878.18	gi|408405215|ref|YP_006863198.1|	-	1e-39	135.8	0.0	1.2e-39	135.6	0.0	1.1	1	0	0	1	1	1	1	EVE	domain
STELLO	PF03385.17	gi|408405217|ref|YP_006863200.1|	-	0.055	12.3	0.1	0.061	12.1	0.1	1.1	1	0	0	1	1	1	0	STELLO	glycosyltransferases
Pyr_redox_2	PF07992.14	gi|408405218|ref|YP_006863201.1|	-	2.5e-11	43.4	0.0	3.1e-11	43.1	0.0	1.1	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
YbaJ	PF10757.9	gi|408405218|ref|YP_006863201.1|	-	0.14	12.8	0.0	0.99	10.0	0.0	2.0	2	0	0	2	2	2	0	Biofilm	formation	regulator	YbaJ
Pyr_redox_2	PF07992.14	gi|408405219|ref|YP_006863202.1|	-	1.3e-09	37.7	0.0	1.5e-09	37.5	0.0	1.0	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_3	PF13738.6	gi|408405219|ref|YP_006863202.1|	-	1.3e-08	34.5	0.1	2.2e-05	23.9	0.0	2.0	2	0	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
HI0933_like	PF03486.14	gi|408405219|ref|YP_006863202.1|	-	0.00012	21.0	0.4	0.11	11.2	0.1	2.1	2	0	0	2	2	2	2	HI0933-like	protein
GIDA	PF01134.22	gi|408405219|ref|YP_006863202.1|	-	0.0028	16.8	0.4	0.25	10.4	0.2	2.1	2	0	0	2	2	2	2	Glucose	inhibited	division	protein	A
FAD_binding_3	PF01494.19	gi|408405219|ref|YP_006863202.1|	-	0.0037	16.6	0.3	0.0095	15.2	0.1	1.6	2	0	0	2	2	2	1	FAD	binding	domain
DAO	PF01266.24	gi|408405219|ref|YP_006863202.1|	-	0.0072	15.9	6.8	0.34	10.4	2.9	2.1	1	1	1	2	2	2	2	FAD	dependent	oxidoreductase
FAD_binding_2	PF00890.24	gi|408405219|ref|YP_006863202.1|	-	0.0078	15.3	1.1	0.011	14.8	0.4	1.6	2	0	0	2	2	2	1	FAD	binding	domain
NAD_binding_9	PF13454.6	gi|408405219|ref|YP_006863202.1|	-	0.0085	16.1	2.9	0.14	12.2	0.2	2.2	2	0	0	2	2	2	1	FAD-NAD(P)-binding
NAD_binding_8	PF13450.6	gi|408405219|ref|YP_006863202.1|	-	0.028	14.6	0.3	0.053	13.8	0.3	1.5	1	0	0	1	1	1	0	NAD(P)-binding	Rossmann-like	domain
UDPG_MGDP_dh_N	PF03721.14	gi|408405219|ref|YP_006863202.1|	-	0.032	13.8	0.2	1.1	8.8	0.1	2.1	2	0	0	2	2	2	0	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
HAD	PF12710.7	gi|408405219|ref|YP_006863202.1|	-	0.042	14.3	0.0	0.048	14.1	0.0	1.2	1	0	0	1	1	1	0	haloacid	dehalogenase-like	hydrolase
Lycopene_cycl	PF05834.12	gi|408405219|ref|YP_006863202.1|	-	0.049	12.7	4.4	0.88	8.6	0.7	2.1	1	1	1	2	2	2	0	Lycopene	cyclase	protein
K_oxygenase	PF13434.6	gi|408405219|ref|YP_006863202.1|	-	0.071	12.2	0.2	2	7.5	0.0	2.0	2	0	0	2	2	2	0	L-lysine	6-monooxygenase	(NADPH-requiring)
Thi4	PF01946.17	gi|408405219|ref|YP_006863202.1|	-	0.081	12.1	0.6	0.13	11.5	0.1	1.5	2	0	0	2	2	2	0	Thi4	family
FTHFS	PF01268.19	gi|408405219|ref|YP_006863202.1|	-	0.15	10.2	0.0	0.2	9.8	0.0	1.1	1	0	0	1	1	1	0	Formate--tetrahydrofolate	ligase
Ribosomal_L13e	PF01294.18	gi|408405221|ref|YP_006863204.1|	-	9.9e-14	51.6	0.1	1.2e-13	51.3	0.1	1.0	1	0	0	1	1	1	1	Ribosomal	protein	L13e
TruD	PF01142.18	gi|408405222|ref|YP_006863205.1|	-	9.2e-101	337.7	0.0	1e-100	337.5	0.0	1.0	1	0	0	1	1	1	1	tRNA	pseudouridine	synthase	D	(TruD)
Cas_Cas4	PF01930.17	gi|408405224|ref|YP_006863207.1|	-	9.3e-06	25.8	0.0	1.5e-05	25.1	0.0	1.4	1	1	0	1	1	1	1	Domain	of	unknown	function	DUF83
AA_kinase	PF00696.28	gi|408405228|ref|YP_006863211.1|	-	1.1e-29	103.7	2.8	1.5e-29	103.3	2.8	1.2	1	0	0	1	1	1	1	Amino	acid	kinase	family
DUF5567	PF17722.1	gi|408405228|ref|YP_006863211.1|	-	0.23	11.3	0.0	0.34	10.8	0.0	1.1	1	0	0	1	1	1	0	Family	of	unknown	function	(DUF5567)
HD	PF01966.22	gi|408405229|ref|YP_006863212.1|	-	7.8e-14	51.9	0.4	2.2e-13	50.5	0.4	1.8	1	0	0	1	1	1	1	HD	domain
HDOD	PF08668.12	gi|408405229|ref|YP_006863212.1|	-	0.12	11.9	0.3	0.28	10.6	0.1	1.8	2	0	0	2	2	2	0	HDOD	domain
Thymidylate_kin	PF02223.17	gi|408405230|ref|YP_006863213.1|	-	9.3e-32	110.2	0.0	1.1e-31	110.0	0.0	1.0	1	0	0	1	1	1	1	Thymidylate	kinase
AAA_28	PF13521.6	gi|408405230|ref|YP_006863213.1|	-	0.0055	17.0	0.0	0.0071	16.6	0.0	1.1	1	0	0	1	1	1	1	AAA	domain
AAA_18	PF13238.6	gi|408405230|ref|YP_006863213.1|	-	0.022	15.3	0.0	0.036	14.6	0.0	1.5	1	1	0	1	1	1	0	AAA	domain
CPT	PF07931.12	gi|408405230|ref|YP_006863213.1|	-	0.097	12.5	0.1	0.21	11.4	0.1	1.5	2	0	0	2	2	2	0	Chloramphenicol	phosphotransferase-like	protein
CBP_BcsQ	PF06564.12	gi|408405230|ref|YP_006863213.1|	-	0.11	12.0	0.1	5.6	6.4	0.0	2.1	2	0	0	2	2	2	0	Cellulose	biosynthesis	protein	BcsQ
DUF374	PF04028.13	gi|408405230|ref|YP_006863213.1|	-	0.12	12.0	0.0	1.7	8.3	0.0	2.2	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF374)
AAA_31	PF13614.6	gi|408405230|ref|YP_006863213.1|	-	0.12	12.3	0.0	0.18	11.7	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
TsaE	PF02367.17	gi|408405230|ref|YP_006863213.1|	-	0.15	12.0	0.1	0.29	11.1	0.1	1.5	1	0	0	1	1	1	0	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
C1_2	PF03107.16	gi|408405232|ref|YP_006863215.1|	-	0.00051	20.3	13.9	0.007	16.7	1.3	2.1	1	1	1	2	2	2	2	C1	domain
DUF1610	PF07754.11	gi|408405232|ref|YP_006863215.1|	-	0.0031	17.4	10.3	0.0056	16.6	3.5	2.5	2	1	0	2	2	2	1	Domain	of	unknown	function	(DUF1610)
Zn_Tnp_IS1595	PF12760.7	gi|408405232|ref|YP_006863215.1|	-	0.021	14.8	18.5	0.99	9.4	18.5	2.1	1	1	0	1	1	1	0	Transposase	zinc-ribbon	domain
HscB_4_cys	PF18256.1	gi|408405232|ref|YP_006863215.1|	-	0.025	14.4	2.9	0.025	14.4	2.9	2.6	2	1	1	3	3	2	0	Co-chaperone	HscB	tetracysteine	metal	binding	motif
XPA_N	PF01286.18	gi|408405232|ref|YP_006863215.1|	-	0.031	14.3	0.3	0.031	14.3	0.3	2.6	3	0	0	3	3	3	0	XPA	protein	N-terminal
DZR	PF12773.7	gi|408405232|ref|YP_006863215.1|	-	0.11	12.6	13.6	17	5.6	13.6	2.3	1	1	0	1	1	1	0	Double	zinc	ribbon
zf_C2H2_10	PF18414.1	gi|408405232|ref|YP_006863215.1|	-	0.15	11.6	0.9	0.15	11.6	0.9	2.4	3	0	0	3	3	3	0	C2H2	type	zinc-finger
zf-CHY	PF05495.12	gi|408405232|ref|YP_006863215.1|	-	0.2	12.2	12.1	1.5	9.4	12.1	1.9	1	1	0	1	1	1	0	CHY	zinc	finger
HypA	PF01155.19	gi|408405232|ref|YP_006863215.1|	-	0.2	11.7	13.5	0.061	13.3	3.8	2.1	1	1	1	2	2	2	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
zf-ribbon_3	PF13248.6	gi|408405232|ref|YP_006863215.1|	-	0.29	10.6	10.5	1	8.9	0.2	3.4	3	0	0	3	3	3	0	zinc-ribbon	domain
Desulfoferrod_N	PF06397.12	gi|408405232|ref|YP_006863215.1|	-	0.44	10.2	12.3	1	9.1	1.0	3.4	2	1	2	4	4	4	0	Desulfoferrodoxin,	N-terminal	domain
CcmH	PF03918.14	gi|408405232|ref|YP_006863215.1|	-	0.45	9.8	3.6	0.096	12.0	0.6	1.5	1	1	1	2	2	2	0	Cytochrome	C	biogenesis	protein
OrfB_Zn_ribbon	PF07282.11	gi|408405232|ref|YP_006863215.1|	-	0.45	10.5	14.2	0.25	11.3	2.3	2.5	1	1	1	2	2	2	0	Putative	transposase	DNA-binding	domain
Elf1	PF05129.13	gi|408405232|ref|YP_006863215.1|	-	0.46	10.6	9.6	0.22	11.6	6.9	1.8	1	1	1	2	2	2	0	Transcription	elongation	factor	Elf1	like
zf-HIT	PF04438.16	gi|408405232|ref|YP_006863215.1|	-	0.53	10.2	20.5	0.11	12.4	6.2	3.0	2	1	0	2	2	2	0	HIT	zinc	finger
zf-RING_5	PF14634.6	gi|408405232|ref|YP_006863215.1|	-	0.77	9.8	12.1	0.62	10.1	1.6	2.4	2	1	0	2	2	2	0	zinc-RING	finger	domain
zinc_ribbon_2	PF13240.6	gi|408405232|ref|YP_006863215.1|	-	1.1	9.0	17.1	0.35	10.6	4.3	3.4	2	2	0	2	2	2	0	zinc-ribbon	domain
Zn_Tnp_IS1	PF03811.13	gi|408405232|ref|YP_006863215.1|	-	1.8	8.3	12.3	0.47	10.2	8.2	2.0	2	1	0	2	2	2	0	InsA	N-terminal	domain
ADD_ATRX	PF17981.1	gi|408405232|ref|YP_006863215.1|	-	2.3	8.1	10.3	6.7	6.7	0.1	2.8	1	1	2	3	3	3	0	Cysteine	Rich	ADD	domain
zf-B_box	PF00643.24	gi|408405232|ref|YP_006863215.1|	-	3.8	7.7	12.7	0.41	10.9	2.3	2.9	2	1	1	3	3	3	0	B-box	zinc	finger
Zn-ribbon_8	PF09723.10	gi|408405232|ref|YP_006863215.1|	-	4.3	7.5	19.3	1.1	9.4	3.3	3.4	1	1	2	3	3	3	0	Zinc	ribbon	domain
Zn_Tnp_IS91	PF14319.6	gi|408405232|ref|YP_006863215.1|	-	8	6.6	12.7	0.97	9.5	1.4	2.2	1	1	1	2	2	2	0	Transposase	zinc-binding	domain
PHD	PF00628.29	gi|408405232|ref|YP_006863215.1|	-	8	6.4	14.6	65	3.5	14.6	3.0	1	1	0	1	1	1	0	PHD-finger
Rubredoxin	PF00301.20	gi|408405232|ref|YP_006863215.1|	-	8.2	6.6	16.6	4.1	7.5	0.1	3.8	1	1	3	4	4	4	0	Rubredoxin
HSP20	PF00011.21	gi|408405233|ref|YP_006863216.1|	-	4.2e-10	39.7	0.0	5.4e-10	39.3	0.0	1.1	1	0	0	1	1	1	1	Hsp20/alpha	crystallin	family
ArsA_HSP20	PF17886.1	gi|408405233|ref|YP_006863216.1|	-	4.4e-10	39.0	0.0	7.7e-10	38.2	0.0	1.4	1	1	0	1	1	1	1	HSP20-like	domain	found	in	ArsA
TubC_N	PF18563.1	gi|408405233|ref|YP_006863216.1|	-	0.041	13.9	0.0	0.074	13.0	0.0	1.3	1	0	0	1	1	1	0	TubC	N-terminal	docking	domain
rve_3	PF13683.6	gi|408405234|ref|YP_006863217.1|	-	0.0059	16.4	0.0	0.0091	15.8	0.0	1.3	1	0	0	1	1	1	1	Integrase	core	domain
rve_2	PF13333.6	gi|408405234|ref|YP_006863217.1|	-	0.015	15.5	0.2	0.025	14.8	0.0	1.5	2	0	0	2	2	2	0	Integrase	core	domain
HTH_29	PF13551.6	gi|408405235|ref|YP_006863218.1|	-	8e-15	54.6	0.7	9e-14	51.3	0.1	2.1	2	0	0	2	2	2	1	Winged	helix-turn	helix
HTH_28	PF13518.6	gi|408405235|ref|YP_006863218.1|	-	1.3e-13	50.8	3.2	4.7e-12	45.9	0.3	2.2	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_23	PF13384.6	gi|408405235|ref|YP_006863218.1|	-	6.9e-13	48.0	0.7	2.4e-11	43.1	0.1	2.4	2	0	0	2	2	2	1	Homeodomain-like	domain
HTH_32	PF13565.6	gi|408405235|ref|YP_006863218.1|	-	3.4e-12	46.8	1.5	5e-12	46.3	0.2	1.8	1	1	1	2	2	2	1	Homeodomain-like	domain
LZ_Tnp_IS481	PF13011.6	gi|408405235|ref|YP_006863218.1|	-	5.3e-12	46.1	0.3	1.3e-10	41.6	0.0	2.1	2	0	0	2	2	2	1	leucine-zipper	of	insertion	element	IS481
HTH_Tnp_1	PF01527.20	gi|408405235|ref|YP_006863218.1|	-	3.4e-08	33.7	0.3	8.6e-08	32.4	0.0	1.8	2	0	0	2	2	2	1	Transposase
HTH_Tnp_1_2	PF13022.6	gi|408405235|ref|YP_006863218.1|	-	4.7e-05	23.5	0.0	7.1e-05	23.0	0.0	1.3	1	0	0	1	1	1	1	Helix-turn-helix	of	insertion	element	transposase
Terminase_5	PF06056.12	gi|408405235|ref|YP_006863218.1|	-	0.0015	18.4	0.2	0.0058	16.5	0.0	1.9	2	0	0	2	2	2	1	Putative	ATPase	subunit	of	terminase	(gpP-like)
HTH_7	PF02796.15	gi|408405235|ref|YP_006863218.1|	-	0.0042	17.1	2.3	0.009	16.1	0.1	2.5	3	0	0	3	3	3	1	Helix-turn-helix	domain	of	resolvase
HTH_AraC	PF00165.23	gi|408405235|ref|YP_006863218.1|	-	0.0063	16.6	0.0	0.044	13.9	0.0	2.2	2	0	0	2	2	2	1	Bacterial	regulatory	helix-turn-helix	proteins,	AraC	family
HTH_36	PF13730.6	gi|408405235|ref|YP_006863218.1|	-	0.0092	15.9	0.1	0.025	14.5	0.1	1.7	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_Tnp_IS630	PF01710.16	gi|408405235|ref|YP_006863218.1|	-	0.013	15.6	4.3	0.044	13.8	4.3	1.9	1	1	0	1	1	1	0	Transposase
HTH_33	PF13592.6	gi|408405235|ref|YP_006863218.1|	-	0.021	14.5	0.1	0.072	12.7	0.1	1.9	1	0	0	1	1	1	0	Winged	helix-turn	helix
CENP-B_N	PF04218.13	gi|408405235|ref|YP_006863218.1|	-	0.027	14.1	0.0	0.061	13.0	0.0	1.5	1	0	0	1	1	1	0	CENP-B	N-terminal	DNA-binding	domain
DUF4817	PF16087.5	gi|408405235|ref|YP_006863218.1|	-	0.031	14.1	2.3	0.4	10.5	0.4	2.9	2	1	0	2	2	2	0	Helix-turn-helix	domain	(DUF4817)
DUF1153	PF06627.11	gi|408405235|ref|YP_006863218.1|	-	0.033	14.3	0.1	0.067	13.3	0.0	1.5	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1153)
Mor	PF08765.11	gi|408405235|ref|YP_006863218.1|	-	0.17	11.9	0.5	2.7	8.0	0.1	2.3	2	0	0	2	2	2	0	Mor	transcription	activator	family
DUF1804	PF08822.11	gi|408405235|ref|YP_006863218.1|	-	0.17	11.8	0.0	0.24	11.4	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1804)
Nop14	PF04147.12	gi|408405236|ref|YP_006863219.1|	-	0.43	8.7	6.8	0.58	8.3	6.8	1.1	1	0	0	1	1	1	0	Nop14-like	family
NOA36	PF06524.12	gi|408405236|ref|YP_006863219.1|	-	3.6	6.8	10.6	5.3	6.3	10.6	1.2	1	0	0	1	1	1	0	NOA36	protein
pXO2-72	PF17443.2	gi|408405237|ref|YP_006863220.1|	-	0.015	15.5	0.1	0.024	14.9	0.1	1.5	1	0	0	1	1	1	0	Uncharacterized	protein	pXO2-72
FtsX	PF02687.21	gi|408405238|ref|YP_006863221.1|	-	0.0037	17.7	0.8	0.0042	17.5	0.8	1.2	1	0	0	1	1	1	1	FtsX-like	permease	family
ABC1	PF03109.16	gi|408405239|ref|YP_006863222.1|	-	5.1e-25	88.0	0.0	1.3e-24	86.6	0.0	1.7	1	0	0	1	1	1	1	ABC1	family
Pkinase	PF00069.25	gi|408405239|ref|YP_006863222.1|	-	5.3e-05	22.7	0.0	0.0001	21.8	0.0	1.4	1	0	0	1	1	1	1	Protein	kinase	domain
APH	PF01636.23	gi|408405239|ref|YP_006863222.1|	-	0.01	15.8	1.2	0.052	13.5	0.4	2.2	1	1	1	2	2	2	0	Phosphotransferase	enzyme	family
CesT	PF05932.13	gi|408405239|ref|YP_006863222.1|	-	0.044	13.9	0.0	0.098	12.8	0.0	1.5	1	0	0	1	1	1	0	Tir	chaperone	protein	(CesT)	family
DcpS_C	PF11969.8	gi|408405239|ref|YP_006863222.1|	-	0.15	12.5	0.4	7.3	7.1	0.0	2.6	3	0	0	3	3	3	0	Scavenger	mRNA	decapping	enzyme	C-term	binding
DUF4795	PF16043.5	gi|408405239|ref|YP_006863222.1|	-	0.21	11.1	0.1	0.48	10.0	0.0	1.5	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4795)
NUDIX	PF00293.28	gi|408405241|ref|YP_006863224.1|	-	4.6e-15	55.8	0.0	5.7e-15	55.5	0.0	1.1	1	0	0	1	1	1	1	NUDIX	domain
ComA	PF02679.15	gi|408405242|ref|YP_006863225.1|	-	9.4e-65	218.4	0.2	1.4e-64	217.9	0.2	1.2	1	0	0	1	1	1	1	(2R)-phospho-3-sulfolactate	synthase	(ComA)
MarR_2	PF12802.7	gi|408405242|ref|YP_006863225.1|	-	1.9e-05	24.4	0.0	3.9e-05	23.5	0.0	1.5	1	0	0	1	1	1	1	MarR	family
TrmB	PF01978.19	gi|408405242|ref|YP_006863225.1|	-	0.00031	20.6	0.0	0.00063	19.6	0.0	1.5	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
Phage_X	PF05155.15	gi|408405242|ref|YP_006863225.1|	-	0.012	16.0	0.0	0.087	13.3	0.0	2.3	3	0	0	3	3	3	0	Phage	X	family
MarR	PF01047.22	gi|408405242|ref|YP_006863225.1|	-	0.025	14.5	0.1	0.054	13.4	0.1	1.6	1	0	0	1	1	1	0	MarR	family
HTH_Crp_2	PF13545.6	gi|408405242|ref|YP_006863225.1|	-	0.026	14.5	0.0	0.051	13.6	0.0	1.4	1	0	0	1	1	1	0	Crp-like	helix-turn-helix	domain
CEL_III_C	PF18054.1	gi|408405242|ref|YP_006863225.1|	-	0.026	14.6	0.1	0.056	13.5	0.1	1.5	1	0	0	1	1	1	0	CEL-III	C-terminal
HTH_24	PF13412.6	gi|408405242|ref|YP_006863225.1|	-	0.13	11.8	0.0	0.29	10.7	0.0	1.7	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
AP_endonuc_2	PF01261.24	gi|408405242|ref|YP_006863225.1|	-	0.13	11.7	0.0	0.2	11.1	0.0	1.4	1	0	0	1	1	1	0	Xylose	isomerase-like	TIM	barrel
HTH_54	PF18607.1	gi|408405242|ref|YP_006863225.1|	-	0.15	12.2	0.0	0.44	10.6	0.0	1.8	1	0	0	1	1	1	0	ParA	helix	turn	helix	domain
BPD_transp_1	PF00528.22	gi|408405243|ref|YP_006863226.1|	-	8.3e-12	45.2	20.1	8.3e-12	45.2	20.1	1.8	1	1	1	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
ABC_tran	PF00005.27	gi|408405244|ref|YP_006863227.1|	-	1.1e-33	116.7	0.0	1.8e-33	115.9	0.0	1.4	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|408405244|ref|YP_006863227.1|	-	6.1e-09	36.1	1.0	0.002	18.0	0.0	2.3	1	1	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
RsgA_GTPase	PF03193.16	gi|408405244|ref|YP_006863227.1|	-	5e-06	26.5	0.0	8.5e-06	25.8	0.0	1.4	1	0	0	1	1	1	1	RsgA	GTPase
SMC_N	PF02463.19	gi|408405244|ref|YP_006863227.1|	-	1.9e-05	24.2	0.8	0.12	11.8	0.1	2.2	2	0	0	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
AAA_15	PF13175.6	gi|408405244|ref|YP_006863227.1|	-	2.8e-05	24.0	1.9	0.003	17.3	0.2	2.2	1	1	0	2	2	2	2	AAA	ATPase	domain
ABC_ATPase	PF09818.9	gi|408405244|ref|YP_006863227.1|	-	5.9e-05	22.1	0.3	0.015	14.2	0.1	2.1	2	0	0	2	2	2	2	Predicted	ATPase	of	the	ABC	class
AAA	PF00004.29	gi|408405244|ref|YP_006863227.1|	-	0.00025	21.5	0.7	0.0041	17.6	0.7	2.3	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_29	PF13555.6	gi|408405244|ref|YP_006863227.1|	-	0.00034	20.3	0.1	0.00075	19.2	0.1	1.6	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_23	PF13476.6	gi|408405244|ref|YP_006863227.1|	-	0.0014	19.1	0.4	0.0032	18.0	0.1	1.7	2	0	0	2	2	2	1	AAA	domain
AAA_16	PF13191.6	gi|408405244|ref|YP_006863227.1|	-	0.0019	18.6	0.1	0.0025	18.2	0.1	1.7	1	1	0	1	1	1	1	AAA	ATPase	domain
MMR_HSR1	PF01926.23	gi|408405244|ref|YP_006863227.1|	-	0.0029	17.7	0.2	0.0091	16.1	0.2	2.0	1	1	0	1	1	1	1	50S	ribosome-binding	GTPase
AAA_22	PF13401.6	gi|408405244|ref|YP_006863227.1|	-	0.0046	17.2	0.2	0.0093	16.2	0.2	1.8	1	1	0	1	1	1	1	AAA	domain
ATPase_2	PF01637.18	gi|408405244|ref|YP_006863227.1|	-	0.0049	16.8	0.1	0.015	15.2	0.1	1.8	1	1	0	1	1	1	1	ATPase	domain	predominantly	from	Archaea
Rad17	PF03215.15	gi|408405244|ref|YP_006863227.1|	-	0.0052	16.7	0.0	0.012	15.5	0.0	1.6	2	0	0	2	2	2	1	Rad17	P-loop	domain
AAA_28	PF13521.6	gi|408405244|ref|YP_006863227.1|	-	0.018	15.3	0.0	0.033	14.4	0.0	1.6	1	1	0	1	1	1	0	AAA	domain
AAA_25	PF13481.6	gi|408405244|ref|YP_006863227.1|	-	0.04	13.5	0.2	0.21	11.1	0.0	2.0	2	0	0	2	2	2	0	AAA	domain
NB-ARC	PF00931.22	gi|408405244|ref|YP_006863227.1|	-	0.042	13.0	0.0	0.073	12.2	0.0	1.3	1	0	0	1	1	1	0	NB-ARC	domain
RNA_helicase	PF00910.22	gi|408405244|ref|YP_006863227.1|	-	0.057	13.8	0.0	0.16	12.4	0.0	1.8	1	0	0	1	1	1	0	RNA	helicase
AAA_14	PF13173.6	gi|408405244|ref|YP_006863227.1|	-	0.13	12.3	0.0	0.34	10.9	0.0	1.7	1	0	0	1	1	1	0	AAA	domain
NACHT	PF05729.12	gi|408405244|ref|YP_006863227.1|	-	0.13	12.1	0.0	0.25	11.2	0.0	1.4	1	0	0	1	1	1	0	NACHT	domain
AAA_18	PF13238.6	gi|408405244|ref|YP_006863227.1|	-	0.16	12.5	0.1	0.46	11.0	0.0	1.8	2	0	0	2	2	2	0	AAA	domain
Dynamin_N	PF00350.23	gi|408405244|ref|YP_006863227.1|	-	0.28	11.2	1.2	0.31	11.1	0.1	1.9	2	1	0	2	2	2	0	Dynamin	family
NMT1_2	PF13379.6	gi|408405245|ref|YP_006863228.1|	-	5.7e-31	108.1	0.0	9.4e-31	107.4	0.0	1.3	1	0	0	1	1	1	1	NMT1-like	family
NMT1	PF09084.11	gi|408405245|ref|YP_006863228.1|	-	1.2e-13	51.5	0.1	1.5e-13	51.2	0.1	1.1	1	0	0	1	1	1	1	NMT1/THI5	like
Phosphonate-bd	PF12974.7	gi|408405245|ref|YP_006863228.1|	-	1.1e-10	41.6	0.0	3.4e-10	39.9	0.0	1.7	1	1	1	2	2	2	1	ABC	transporter,	phosphonate,	periplasmic	substrate-binding	protein
OpuAC	PF04069.12	gi|408405245|ref|YP_006863228.1|	-	3.8e-05	23.4	0.3	9.4e-05	22.1	0.3	1.5	1	1	0	1	1	1	1	Substrate	binding	domain	of	ABC-type	glycine	betaine	transport	system
SBP_bac_3	PF00497.20	gi|408405245|ref|YP_006863228.1|	-	0.0002	20.9	0.0	0.24	10.8	0.0	2.2	1	1	1	2	2	2	2	Bacterial	extracellular	solute-binding	proteins,	family	3
NMT1_3	PF16868.5	gi|408405245|ref|YP_006863228.1|	-	0.00071	19.1	0.0	0.0011	18.5	0.0	1.2	1	0	0	1	1	1	1	NMT1-like	family
Peptidase_M16_C	PF05193.21	gi|408405245|ref|YP_006863228.1|	-	0.16	11.9	0.1	0.48	10.4	0.1	1.8	2	0	0	2	2	2	0	Peptidase	M16	inactive	domain
HHH_5	PF14520.6	gi|408405246|ref|YP_006863229.1|	-	0.0033	18.0	0.3	0.0047	17.5	0.3	1.2	1	0	0	1	1	1	1	Helix-hairpin-helix	domain
HHH_2	PF12826.7	gi|408405246|ref|YP_006863229.1|	-	0.087	12.9	0.0	0.11	12.6	0.0	1.3	1	0	0	1	1	1	0	Helix-hairpin-helix	motif
TPP_enzyme_N	PF02776.18	gi|408405247|ref|YP_006863230.1|	-	5.3e-48	162.9	0.0	2.4e-47	160.7	0.0	1.9	2	0	0	2	2	2	1	Thiamine	pyrophosphate	enzyme,	N-terminal	TPP	binding	domain
TPP_enzyme_C	PF02775.21	gi|408405247|ref|YP_006863230.1|	-	1.1e-41	142.2	0.1	3.3e-41	140.6	0.1	1.9	1	0	0	1	1	1	1	Thiamine	pyrophosphate	enzyme,	C-terminal	TPP	binding	domain
TPP_enzyme_M	PF00205.22	gi|408405247|ref|YP_006863230.1|	-	5.5e-32	110.4	0.1	1e-31	109.5	0.1	1.5	1	0	0	1	1	1	1	Thiamine	pyrophosphate	enzyme,	central	domain
POR_N	PF01855.19	gi|408405247|ref|YP_006863230.1|	-	2.2e-05	24.3	0.1	5.1e-05	23.1	0.1	1.5	1	0	0	1	1	1	1	Pyruvate	flavodoxin/ferredoxin	oxidoreductase,	thiamine	diP-bdg
DXP_synthase_N	PF13292.6	gi|408405247|ref|YP_006863230.1|	-	0.00063	19.0	0.2	0.42	9.8	0.0	2.3	2	0	0	2	2	2	2	1-deoxy-D-xylulose-5-phosphate	synthase
Pterin_4a	PF01329.19	gi|408405248|ref|YP_006863231.1|	-	3e-32	110.6	0.0	3.5e-32	110.4	0.0	1.1	1	0	0	1	1	1	1	Pterin	4	alpha	carbinolamine	dehydratase
IF-2	PF11987.8	gi|408405248|ref|YP_006863231.1|	-	0.013	15.6	0.1	0.025	14.7	0.1	1.5	1	1	0	1	1	1	0	Translation-initiation	factor	2
GDYXXLXY	PF14345.6	gi|408405248|ref|YP_006863231.1|	-	0.15	11.9	0.0	0.2	11.4	0.0	1.2	1	0	0	1	1	1	0	GDYXXLXY	protein
MG2	PF01835.19	gi|408405249|ref|YP_006863232.1|	-	0.0017	18.8	0.1	0.0053	17.2	0.1	1.9	1	0	0	1	1	1	1	MG2	domain
PKD	PF00801.20	gi|408405249|ref|YP_006863232.1|	-	0.093	12.6	0.3	0.35	10.8	0.3	2.1	1	0	0	1	1	1	0	PKD	domain
SWM_repeat	PF13753.6	gi|408405249|ref|YP_006863232.1|	-	0.12	12.6	1.6	0.76	10.0	0.2	2.6	2	0	0	2	2	2	0	Putative	flagellar	system-associated	repeat
Oxidored_q2	PF00420.24	gi|408405250|ref|YP_006863233.1|	-	0.032	13.9	0.6	0.036	13.7	0.6	1.1	1	0	0	1	1	1	0	NADH-ubiquinone/plastoquinone	oxidoreductase	chain	4L
Peripla_BP_2	PF01497.18	gi|408405251|ref|YP_006863234.1|	-	0.0055	16.3	0.0	0.0056	16.3	0.0	1.0	1	0	0	1	1	1	1	Periplasmic	binding	protein
DUF2256	PF10013.9	gi|408405252|ref|YP_006863235.1|	-	1.9	8.7	5.5	4.6	7.4	4.5	2.1	1	1	1	2	2	2	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2256)
MEDS	PF14417.6	gi|408405253|ref|YP_006863236.1|	-	1.1e-06	28.6	0.1	1.7e-06	28.0	0.1	1.4	1	1	0	1	1	1	1	MEDS:	MEthanogen/methylotroph,	DcmR	Sensory	domain
Response_reg	PF00072.24	gi|408405254|ref|YP_006863237.1|	-	9.5e-24	83.7	0.1	1.1e-23	83.6	0.1	1.0	1	0	0	1	1	1	1	Response	regulator	receiver	domain
DUF3408	PF11888.8	gi|408405254|ref|YP_006863237.1|	-	0.016	15.4	0.0	0.036	14.2	0.0	1.5	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3408)
Methyltransf_25	PF13649.6	gi|408405254|ref|YP_006863237.1|	-	0.031	15.0	0.0	0.046	14.4	0.0	1.4	1	1	0	1	1	1	0	Methyltransferase	domain
DUF2201	PF09967.9	gi|408405254|ref|YP_006863237.1|	-	0.06	13.5	0.0	0.11	12.7	0.0	1.4	1	0	0	1	1	1	0	VWA-like	domain	(DUF2201)
Peptidase_M20	PF01546.28	gi|408405255|ref|YP_006863238.1|	-	2.1e-33	115.7	0.0	2.7e-33	115.4	0.0	1.1	1	0	0	1	1	1	1	Peptidase	family	M20/M25/M40
M20_dimer	PF07687.14	gi|408405255|ref|YP_006863238.1|	-	5.6e-14	52.0	0.0	9.5e-14	51.2	0.0	1.4	1	0	0	1	1	1	1	Peptidase	dimerisation	domain
ATP-grasp_5	PF13549.6	gi|408405257|ref|YP_006863240.1|	-	4.3e-83	278.1	0.6	9.7e-83	277.0	0.3	1.7	2	0	0	2	2	2	1	ATP-grasp	domain
Succ_CoA_lig	PF13607.6	gi|408405257|ref|YP_006863240.1|	-	1.9e-55	186.5	1.4	1.9e-55	186.5	1.4	2.0	2	0	0	2	2	2	1	Succinyl-CoA	ligase	like	flavodoxin	domain
CoA_binding_2	PF13380.6	gi|408405257|ref|YP_006863240.1|	-	3.3e-23	82.4	1.0	4.9e-22	78.6	0.1	3.2	3	1	1	4	4	3	1	CoA	binding	domain
CoA_binding	PF02629.19	gi|408405257|ref|YP_006863240.1|	-	9.8e-12	45.4	3.0	2.5e-11	44.1	0.6	2.8	3	0	0	3	3	3	1	CoA	binding	domain
ATP-grasp_2	PF08442.10	gi|408405257|ref|YP_006863240.1|	-	2.3e-06	27.3	0.3	4.5e-06	26.4	0.3	1.5	1	0	0	1	1	1	1	ATP-grasp	domain
CPSase_L_D2	PF02786.17	gi|408405257|ref|YP_006863240.1|	-	0.00084	18.9	0.1	0.0017	17.9	0.1	1.5	1	0	0	1	1	1	1	Carbamoyl-phosphate	synthase	L	chain,	ATP	binding	domain
YIEGIA	PF14045.6	gi|408405257|ref|YP_006863240.1|	-	0.047	12.5	0.1	0.1	11.4	0.1	1.5	1	0	0	1	1	1	0	YIEGIA	protein
ATP-grasp	PF02222.22	gi|408405257|ref|YP_006863240.1|	-	0.065	12.8	0.1	0.15	11.7	0.1	1.6	1	0	0	1	1	1	0	ATP-grasp	domain
NAD_Gly3P_dh_N	PF01210.23	gi|408405257|ref|YP_006863240.1|	-	0.082	12.9	0.2	0.4	10.7	0.0	2.1	2	0	0	2	2	2	0	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
DUF4849	PF16141.5	gi|408405257|ref|YP_006863240.1|	-	0.12	11.6	0.0	0.23	10.7	0.0	1.4	1	0	0	1	1	1	0	Putative	glycoside	hydrolase	Family	18,	chitinase_18
Pan3_PK	PF18101.1	gi|408405257|ref|YP_006863240.1|	-	0.18	11.8	0.2	0.51	10.3	0.1	1.8	2	0	0	2	2	2	0	Pan3	Pseudokinase	domain
DZR	PF12773.7	gi|408405258|ref|YP_006863241.1|	-	1.8e-07	31.1	5.3	0.00022	21.2	0.8	2.3	2	0	0	2	2	2	2	Double	zinc	ribbon
zinc_ribbon_15	PF17032.5	gi|408405258|ref|YP_006863241.1|	-	6.3e-06	26.9	1.5	0.023	15.4	0.1	2.3	2	0	0	2	2	2	2	zinc-ribbon	family
zinc_ribbon_2	PF13240.6	gi|408405258|ref|YP_006863241.1|	-	1.8e-05	24.3	4.4	1.8e-05	24.3	4.4	3.3	3	0	0	3	3	3	1	zinc-ribbon	domain
HypA	PF01155.19	gi|408405258|ref|YP_006863241.1|	-	0.00094	19.2	3.2	0.29	11.2	0.2	2.5	2	0	0	2	2	2	2	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
Zn_ribbon_SprT	PF17283.2	gi|408405258|ref|YP_006863241.1|	-	0.02	14.8	0.7	0.02	14.8	0.7	2.3	2	1	0	2	2	1	0	SprT-like	zinc	ribbon	domain
DUF2757	PF10955.8	gi|408405258|ref|YP_006863241.1|	-	0.024	14.9	1.0	5.9	7.2	0.1	2.6	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2757)
DUF2199	PF09965.9	gi|408405258|ref|YP_006863241.1|	-	0.024	14.7	0.6	1.7	8.7	0.1	2.4	2	0	0	2	2	2	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2199)
zf-ribbon_3	PF13248.6	gi|408405258|ref|YP_006863241.1|	-	0.034	13.6	3.5	0.034	13.6	3.5	3.1	3	0	0	3	3	3	0	zinc-ribbon	domain
zf-RanBP	PF00641.18	gi|408405258|ref|YP_006863241.1|	-	0.054	12.8	1.2	0.054	12.8	1.2	2.4	3	0	0	3	3	3	0	Zn-finger	in	Ran	binding	protein	and	others
PRC	PF05239.16	gi|408405258|ref|YP_006863241.1|	-	0.12	12.5	0.1	0.29	11.2	0.1	1.7	1	1	0	1	1	1	0	PRC-barrel	domain
Zn-ribbon_8	PF09723.10	gi|408405258|ref|YP_006863241.1|	-	0.16	12.1	15.3	1.3	9.2	0.1	3.6	3	1	0	3	3	3	0	Zinc	ribbon	domain
DUF983	PF06170.12	gi|408405258|ref|YP_006863241.1|	-	0.69	10.4	0.1	0.69	10.4	0.1	3.2	3	1	1	4	4	4	0	Protein	of	unknown	function	(DUF983)
zinc-ribbons_6	PF07191.12	gi|408405258|ref|YP_006863241.1|	-	1.2	9.2	10.4	5.2	7.1	0.5	3.0	2	1	1	3	3	3	0	zinc-ribbons
zf-B_box	PF00643.24	gi|408405258|ref|YP_006863241.1|	-	1.2	9.3	9.1	6.8	6.9	0.4	3.0	3	0	0	3	3	3	0	B-box	zinc	finger
Tnp_zf-ribbon_2	PF13842.6	gi|408405258|ref|YP_006863241.1|	-	1.5	9.7	6.8	3.4	8.5	0.5	3.0	3	0	0	3	3	3	0	DDE_Tnp_1-like	zinc-ribbon
C1_2	PF03107.16	gi|408405258|ref|YP_006863241.1|	-	1.6	9.1	9.0	20	5.6	0.1	3.2	3	0	0	3	3	3	0	C1	domain
PriA_CRR	PF18319.1	gi|408405258|ref|YP_006863241.1|	-	1.9	8.6	5.6	11	6.1	2.3	2.6	2	0	0	2	2	2	0	PriA	DNA	helicase	Cys-rich	region	(CRR)	domain
zf-CHY	PF05495.12	gi|408405258|ref|YP_006863241.1|	-	2.4	8.7	7.7	4.9	7.7	1.9	2.5	2	1	0	2	2	2	0	CHY	zinc	finger
PHF5	PF03660.14	gi|408405258|ref|YP_006863241.1|	-	3.1	8.0	7.0	15	5.8	0.1	3.2	2	1	1	3	3	3	0	PHF5-like	protein
NOB1_Zn_bind	PF08772.11	gi|408405258|ref|YP_006863241.1|	-	3.5	7.9	9.6	0.56	10.4	1.7	2.9	3	0	0	3	3	3	0	Nin	one	binding	(NOB1)	Zn-ribbon	like
OrfB_Zn_ribbon	PF07282.11	gi|408405258|ref|YP_006863241.1|	-	6.5	6.8	8.6	3.8	7.5	1.5	3.0	3	0	0	3	3	3	0	Putative	transposase	DNA-binding	domain
DUF35_N	PF12172.8	gi|408405258|ref|YP_006863241.1|	-	7.1	6.6	12.5	13	5.8	3.6	3.2	3	0	0	3	3	3	0	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
TFIIS_C	PF01096.18	gi|408405258|ref|YP_006863241.1|	-	8.2	6.4	11.7	4.4	7.2	0.1	4.0	4	0	0	4	4	4	0	Transcription	factor	S-II	(TFIIS)
ABC2_membrane	PF01061.24	gi|408405259|ref|YP_006863242.1|	-	1.9e-21	76.4	26.9	1.9e-21	76.4	26.9	1.5	2	0	0	2	2	2	1	ABC-2	type	transporter
ABC2_membrane_3	PF12698.7	gi|408405259|ref|YP_006863242.1|	-	3.1e-12	46.3	39.5	8.6e-12	44.8	30.1	2.0	1	1	1	2	2	2	2	ABC-2	family	transporter	protein
ABC2_membrane_4	PF12730.7	gi|408405259|ref|YP_006863242.1|	-	0.0013	18.7	13.5	0.0013	18.7	13.5	1.9	2	1	0	2	2	2	1	ABC-2	family	transporter	protein
ABC2_membrane_5	PF13346.6	gi|408405259|ref|YP_006863242.1|	-	7.9	6.0	30.9	1.8e+02	1.6	30.9	2.6	1	1	0	1	1	1	0	ABC-2	family	transporter	protein
ABC_tran	PF00005.27	gi|408405260|ref|YP_006863243.1|	-	5.1e-31	108.0	0.0	8.9e-31	107.2	0.0	1.4	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|408405260|ref|YP_006863243.1|	-	3.5e-12	46.7	0.2	7.1e-07	29.3	0.0	2.5	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
DUF4162	PF13732.6	gi|408405260|ref|YP_006863243.1|	-	7.2e-06	26.6	0.0	2.7e-05	24.8	0.0	2.0	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF4162)
AAA_23	PF13476.6	gi|408405260|ref|YP_006863243.1|	-	0.00018	22.1	0.0	0.00029	21.4	0.0	1.4	1	0	0	1	1	1	1	AAA	domain
AAA_15	PF13175.6	gi|408405260|ref|YP_006863243.1|	-	0.00083	19.2	0.0	0.56	9.8	0.0	2.5	2	1	1	3	3	3	2	AAA	ATPase	domain
AAA_29	PF13555.6	gi|408405260|ref|YP_006863243.1|	-	0.013	15.2	0.1	0.024	14.4	0.1	1.4	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
AAA_30	PF13604.6	gi|408405260|ref|YP_006863243.1|	-	0.02	14.6	0.0	0.028	14.1	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
AAA	PF00004.29	gi|408405260|ref|YP_006863243.1|	-	0.035	14.5	0.6	0.098	13.1	0.2	1.9	2	0	0	2	2	2	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
SRP54	PF00448.22	gi|408405260|ref|YP_006863243.1|	-	0.043	13.4	0.2	0.089	12.4	0.2	1.4	1	0	0	1	1	1	0	SRP54-type	protein,	GTPase	domain
ACT_4	PF13291.6	gi|408405260|ref|YP_006863243.1|	-	0.063	13.9	0.1	0.16	12.5	0.1	1.7	1	0	0	1	1	1	0	ACT	domain
G-alpha	PF00503.20	gi|408405260|ref|YP_006863243.1|	-	0.16	11.1	0.0	0.22	10.7	0.0	1.2	1	0	0	1	1	1	0	G-protein	alpha	subunit
Pyr_redox_2	PF07992.14	gi|408405261|ref|YP_006863244.1|	-	7.6e-54	182.9	0.3	1.1e-53	182.4	0.3	1.2	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_dim	PF02852.22	gi|408405261|ref|YP_006863244.1|	-	5.6e-25	87.7	0.1	1.1e-24	86.8	0.1	1.5	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase,	dimerisation	domain
Pyr_redox	PF00070.27	gi|408405261|ref|YP_006863244.1|	-	1.9e-16	60.4	1.9	2.9e-13	50.2	0.0	2.9	2	0	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_3	PF13738.6	gi|408405261|ref|YP_006863244.1|	-	2.4e-12	46.7	3.0	1.5e-09	37.6	0.0	2.3	2	0	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
K_oxygenase	PF13434.6	gi|408405261|ref|YP_006863244.1|	-	7.4e-10	38.5	0.4	2.9e-06	26.7	0.0	2.7	2	1	1	3	3	3	2	L-lysine	6-monooxygenase	(NADPH-requiring)
FAD_binding_2	PF00890.24	gi|408405261|ref|YP_006863244.1|	-	3.4e-05	23.1	2.6	0.0011	18.1	1.1	2.6	2	1	1	3	3	3	1	FAD	binding	domain
HI0933_like	PF03486.14	gi|408405261|ref|YP_006863244.1|	-	0.0025	16.6	1.5	0.17	10.5	0.5	3.0	3	0	0	3	3	3	1	HI0933-like	protein
3HCDH_N	PF02737.18	gi|408405261|ref|YP_006863244.1|	-	0.02	14.8	1.0	0.53	10.1	0.0	2.4	2	0	0	2	2	2	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
XdhC_C	PF13478.6	gi|408405261|ref|YP_006863244.1|	-	0.058	13.9	0.0	0.53	10.8	0.0	2.3	2	0	0	2	2	2	0	XdhC	Rossmann	domain
PCMT	PF01135.19	gi|408405261|ref|YP_006863244.1|	-	0.076	12.8	0.1	0.63	9.7	0.0	2.3	3	0	0	3	3	3	0	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
NAD_binding_8	PF13450.6	gi|408405261|ref|YP_006863244.1|	-	0.12	12.6	2.6	0.99	9.7	0.4	2.6	2	0	0	2	2	2	0	NAD(P)-binding	Rossmann-like	domain
tRNA_anti-codon	PF01336.25	gi|408405262|ref|YP_006863245.1|	-	5.6e-14	51.9	2.1	0.00077	19.4	0.0	3.5	3	0	0	3	3	3	3	OB-fold	nucleic	acid	binding	domain
CDC24_OB3	PF17244.2	gi|408405262|ref|YP_006863245.1|	-	6.4e-06	26.0	0.2	0.12	12.0	0.0	2.3	2	0	0	2	2	2	2	Cell	division	control	protein	24,	OB	domain	3
REPA_OB_2	PF16900.5	gi|408405262|ref|YP_006863245.1|	-	0.00035	20.4	3.2	0.015	15.2	0.1	2.9	3	0	0	3	3	3	1	Replication	protein	A	OB	domain
POT1PC	PF16686.5	gi|408405262|ref|YP_006863245.1|	-	0.00081	19.3	0.0	9.2	6.1	0.0	3.3	3	0	0	3	3	3	2	ssDNA-binding	domain	of	telomere	protection	protein
tRNA_anti_2	PF13742.6	gi|408405262|ref|YP_006863245.1|	-	0.0035	17.5	0.2	6.7	7.0	0.0	3.6	3	1	0	3	3	3	1	OB-fold	nucleic	acid	binding	domain
MlaD	PF02470.20	gi|408405262|ref|YP_006863245.1|	-	0.2	11.9	1.2	5.1	7.5	0.1	2.9	2	0	0	2	2	2	0	MlaD	protein
NfeD	PF01957.18	gi|408405262|ref|YP_006863245.1|	-	0.99	9.8	3.3	5	7.6	0.2	3.0	3	0	0	3	3	3	0	NfeD-like	C-terminal,	partner-binding
GCS2	PF04107.13	gi|408405263|ref|YP_006863246.1|	-	1.8e-05	24.3	0.0	5.8e-05	22.6	0.0	1.7	1	1	0	1	1	1	1	Glutamate-cysteine	ligase	family	2(GCS2)
DEAD	PF00270.29	gi|408405264|ref|YP_006863247.1|	-	3e-30	105.3	0.3	8.3e-30	103.8	0.3	1.8	1	0	0	1	1	1	1	DEAD/DEAH	box	helicase
DEAD_assoc	PF08494.11	gi|408405264|ref|YP_006863247.1|	-	2.1e-28	99.4	0.0	6.8e-28	97.8	0.0	1.9	1	0	0	1	1	1	1	DEAD/H	associated
Helicase_C	PF00271.31	gi|408405264|ref|YP_006863247.1|	-	1.1e-23	83.7	0.3	6.9e-22	77.9	0.1	3.4	3	0	0	3	3	3	1	Helicase	conserved	C-terminal	domain
ResIII	PF04851.15	gi|408405264|ref|YP_006863247.1|	-	4.9e-09	36.4	0.0	1.1e-08	35.3	0.0	1.6	1	0	0	1	1	1	1	Type	III	restriction	enzyme,	res	subunit
SNF2_N	PF00176.23	gi|408405264|ref|YP_006863247.1|	-	6.5e-05	21.8	0.2	0.00017	20.4	0.1	1.7	2	0	0	2	2	2	1	SNF2	family	N-terminal	domain
Cas_APE2256	PF09651.10	gi|408405264|ref|YP_006863247.1|	-	0.01	15.8	0.2	4.4	7.2	0.0	4.0	4	0	0	4	4	4	0	CRISPR-associated	protein	(Cas_APE2256)
AAA_19	PF13245.6	gi|408405264|ref|YP_006863247.1|	-	0.021	15.1	1.7	0.18	12.1	0.3	3.0	2	1	0	2	2	2	0	AAA	domain
SpoU_sub_bind	PF08032.12	gi|408405264|ref|YP_006863247.1|	-	0.24	11.7	1.4	11	6.4	0.1	3.4	3	0	0	3	3	3	0	RNA	2'-O	ribose	methyltransferase	substrate	binding
MRC1	PF09444.10	gi|408405264|ref|YP_006863247.1|	-	0.54	10.8	2.0	3.1	8.3	0.3	2.3	2	0	0	2	2	2	0	MRC1-like	domain
LPG_synthase_TM	PF03706.13	gi|408405266|ref|YP_006863249.1|	-	0.017	14.7	0.1	0.019	14.5	0.1	1.0	1	0	0	1	1	1	0	Lysylphosphatidylglycerol	synthase	TM	region
HemY_N	PF07219.13	gi|408405266|ref|YP_006863249.1|	-	0.076	13.2	0.1	0.098	12.9	0.1	1.2	1	0	0	1	1	1	0	HemY	protein	N-terminus
EphA2_TM	PF14575.6	gi|408405266|ref|YP_006863249.1|	-	0.14	13.1	0.1	0.24	12.3	0.1	1.4	1	0	0	1	1	1	0	Ephrin	type-A	receptor	2	transmembrane	domain
Amnionless	PF14828.6	gi|408405266|ref|YP_006863249.1|	-	0.14	11.0	0.0	0.15	10.9	0.0	1.0	1	0	0	1	1	1	0	Amnionless
Vpu	PF00558.19	gi|408405266|ref|YP_006863249.1|	-	0.29	10.9	2.3	0.54	10.1	2.3	1.5	1	1	0	1	1	1	0	Vpu	protein
LapA_dom	PF06305.11	gi|408405266|ref|YP_006863249.1|	-	0.65	9.8	2.5	1	9.2	0.3	2.1	2	0	0	2	2	2	0	Lipopolysaccharide	assembly	protein	A	domain
Insulin_TMD	PF17870.1	gi|408405266|ref|YP_006863249.1|	-	6.1	7.0	8.8	0.12	12.4	1.6	1.8	2	0	0	2	2	2	0	Insulin	receptor	trans-membrane	segment
Ribosomal_L15e	PF00827.17	gi|408405270|ref|YP_006863253.1|	-	9.5e-48	162.5	2.5	1.2e-47	162.1	2.5	1.0	1	0	0	1	1	1	1	Ribosomal	L15
2-Hacid_dh_C	PF02826.19	gi|408405271|ref|YP_006863254.1|	-	3.5e-66	221.9	0.0	6e-66	221.2	0.0	1.4	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
2-Hacid_dh	PF00389.30	gi|408405271|ref|YP_006863254.1|	-	6.6e-30	103.5	0.2	7.5e-30	103.3	0.2	1.0	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	catalytic	domain
NAD_binding_2	PF03446.15	gi|408405271|ref|YP_006863254.1|	-	1.2e-06	28.8	0.2	5e-06	26.8	0.0	2.0	2	1	0	2	2	2	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
AdoHcyase_NAD	PF00670.21	gi|408405271|ref|YP_006863254.1|	-	0.0028	17.7	0.1	0.079	13.0	0.0	2.2	2	0	0	2	2	2	1	S-adenosyl-L-homocysteine	hydrolase,	NAD	binding	domain
XdhC_C	PF13478.6	gi|408405271|ref|YP_006863254.1|	-	0.0065	17.0	0.0	0.09	13.3	0.0	2.5	2	0	0	2	2	2	1	XdhC	Rossmann	domain
ThuA	PF06283.11	gi|408405271|ref|YP_006863254.1|	-	0.18	12.0	0.0	0.49	10.6	0.0	1.6	2	0	0	2	2	2	0	Trehalose	utilisation
Lyase_1	PF00206.20	gi|408405273|ref|YP_006863256.1|	-	5.5e-92	308.5	0.2	7e-92	308.1	0.2	1.1	1	0	0	1	1	1	1	Lyase
FumaraseC_C	PF10415.9	gi|408405273|ref|YP_006863256.1|	-	5.2e-19	68.4	0.3	5.2e-19	68.4	0.3	1.9	2	0	0	2	2	2	1	Fumarase	C	C-terminus
FliJ	PF02050.16	gi|408405273|ref|YP_006863256.1|	-	0.071	13.3	0.1	0.24	11.6	0.0	1.9	2	0	0	2	2	2	0	Flagellar	FliJ	protein
DUF2443	PF10398.9	gi|408405273|ref|YP_006863256.1|	-	0.079	13.0	0.1	0.91	9.6	0.1	2.6	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2443)
ADH_N	PF08240.12	gi|408405275|ref|YP_006863258.1|	-	3.1e-34	117.1	0.2	5.1e-34	116.4	0.2	1.3	1	0	0	1	1	1	1	Alcohol	dehydrogenase	GroES-like	domain
ADH_zinc_N	PF00107.26	gi|408405275|ref|YP_006863258.1|	-	1.3e-25	89.9	0.2	2.6e-25	88.9	0.2	1.5	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
ADH_zinc_N_2	PF13602.6	gi|408405275|ref|YP_006863258.1|	-	2.5e-14	54.4	0.0	4e-14	53.8	0.0	1.3	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
AlaDh_PNT_C	PF01262.21	gi|408405275|ref|YP_006863258.1|	-	0.00023	20.6	1.3	0.00037	19.9	1.3	1.3	1	0	0	1	1	1	1	Alanine	dehydrogenase/PNT,	C-terminal	domain
PglD_N	PF17836.1	gi|408405275|ref|YP_006863258.1|	-	0.0027	18.3	1.7	0.0089	16.6	1.5	2.0	1	1	0	1	1	1	1	PglD	N-terminal	domain
TrkA_N	PF02254.18	gi|408405275|ref|YP_006863258.1|	-	0.012	15.9	0.4	0.024	14.9	0.4	1.5	1	0	0	1	1	1	0	TrkA-N	domain
Pyr_redox	PF00070.27	gi|408405275|ref|YP_006863258.1|	-	0.063	13.8	0.2	3.3	8.3	0.3	2.5	2	0	0	2	2	2	0	Pyridine	nucleotide-disulphide	oxidoreductase
4HB_MCP_1	PF12729.7	gi|408405277|ref|YP_006863260.1|	-	0.024	14.2	2.0	0.037	13.6	2.0	1.3	1	0	0	1	1	1	0	Four	helix	bundle	sensory	module	for	signal	transduction
Aldedh	PF00171.22	gi|408405278|ref|YP_006863261.1|	-	6.5e-151	503.0	0.2	8.1e-151	502.6	0.2	1.0	1	0	0	1	1	1	1	Aldehyde	dehydrogenase	family
LuxC	PF05893.14	gi|408405278|ref|YP_006863261.1|	-	0.034	13.2	0.0	0.055	12.5	0.0	1.3	1	0	0	1	1	1	0	Acyl-CoA	reductase	(LuxC)
ALAD	PF00490.21	gi|408405279|ref|YP_006863262.1|	-	2.3e-108	362.1	1.9	2.8e-108	361.8	1.9	1.0	1	0	0	1	1	1	1	Delta-aminolevulinic	acid	dehydratase
Glycos_transf_2	PF00535.26	gi|408405280|ref|YP_006863263.1|	-	4e-23	82.1	0.0	5.5e-23	81.6	0.0	1.2	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_tranf_2_3	PF13641.6	gi|408405280|ref|YP_006863263.1|	-	1.4e-14	54.5	0.0	3.2e-14	53.4	0.0	1.5	1	1	0	1	1	1	1	Glycosyltransferase	like	family	2
Glyco_trans_2_3	PF13632.6	gi|408405280|ref|YP_006863263.1|	-	7.6e-07	29.2	0.0	9.9e-07	28.9	0.0	1.1	1	0	0	1	1	1	1	Glycosyl	transferase	family	group	2
Glyco_tranf_2_2	PF10111.9	gi|408405280|ref|YP_006863263.1|	-	0.0011	18.4	0.0	0.0017	17.9	0.0	1.2	1	0	0	1	1	1	1	Glycosyltransferase	like	family	2
Glyco_tranf_2_4	PF13704.6	gi|408405280|ref|YP_006863263.1|	-	0.084	13.4	0.0	0.3	11.7	0.0	1.9	2	0	0	2	2	2	0	Glycosyl	transferase	family	2
CorA	PF01544.18	gi|408405281|ref|YP_006863264.1|	-	1.4e-61	208.4	0.9	1.6e-61	208.2	0.9	1.0	1	0	0	1	1	1	1	CorA-like	Mg2+	transporter	protein
MnmE_helical	PF12631.7	gi|408405281|ref|YP_006863264.1|	-	0.0022	18.2	0.6	0.052	13.7	0.1	2.0	1	1	1	2	2	2	1	MnmE	helical	domain
DUF2207	PF09972.9	gi|408405281|ref|YP_006863264.1|	-	0.028	13.2	0.0	0.035	12.9	0.0	1.1	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2207)
EMP24_GP25L	PF01105.24	gi|408405281|ref|YP_006863264.1|	-	0.077	12.9	0.2	0.077	12.9	0.2	1.6	2	0	0	2	2	2	0	emp24/gp25L/p24	family/GOLD
EFP_N	PF08207.12	gi|408405283|ref|YP_006863266.1|	-	3.3e-09	36.7	0.0	5.7e-07	29.5	0.0	2.4	2	0	0	2	2	2	2	Elongation	factor	P	(EF-P)	KOW-like	domain
eIF-5a	PF01287.20	gi|408405283|ref|YP_006863266.1|	-	1.3e-05	25.2	1.4	1.8e-05	24.8	1.4	1.2	1	0	0	1	1	1	1	Eukaryotic	elongation	factor	5A	hypusine,	DNA-binding	OB	fold
EFP	PF01132.20	gi|408405283|ref|YP_006863266.1|	-	0.029	14.4	0.0	0.1	12.6	0.0	1.9	2	0	0	2	2	2	0	Elongation	factor	P	(EF-P)	OB	domain
BPD_transp_1	PF00528.22	gi|408405284|ref|YP_006863267.1|	-	1.2e-27	96.9	8.9	1.2e-27	96.9	8.9	1.7	2	0	0	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
OppC_N	PF12911.7	gi|408405284|ref|YP_006863267.1|	-	0.0047	16.9	0.0	0.0047	16.9	0.0	2.6	3	0	0	3	3	3	1	N-terminal	TM	domain	of	oligopeptide	transport	permease	C
BPD_transp_1	PF00528.22	gi|408405285|ref|YP_006863268.1|	-	1.3e-35	122.9	18.1	1.3e-35	122.9	18.1	1.7	2	0	0	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
SBP_bac_5	PF00496.22	gi|408405286|ref|YP_006863269.1|	-	2.4e-21	76.2	0.7	4.5e-20	72.0	0.1	2.7	3	0	0	3	3	3	1	Bacterial	extracellular	solute-binding	proteins,	family	5	Middle
LtrA	PF06772.11	gi|408405286|ref|YP_006863269.1|	-	0.024	13.9	6.5	0.035	13.3	6.5	1.1	1	0	0	1	1	1	0	Bacterial	low	temperature	requirement	A	protein	(LtrA)
ABC_tran	PF00005.27	gi|408405287|ref|YP_006863270.1|	-	3.1e-32	112.0	0.0	4e-32	111.6	0.0	1.1	1	0	0	1	1	1	1	ABC	transporter
oligo_HPY	PF08352.12	gi|408405287|ref|YP_006863270.1|	-	2.6e-07	31.0	0.0	5.1e-07	30.1	0.0	1.5	1	0	0	1	1	1	1	Oligopeptide/dipeptide	transporter,	C-terminal	region
AAA_22	PF13401.6	gi|408405287|ref|YP_006863270.1|	-	8.5e-06	26.1	0.1	6.9e-05	23.1	0.1	2.0	1	1	0	1	1	1	1	AAA	domain
AAA_16	PF13191.6	gi|408405287|ref|YP_006863270.1|	-	4e-05	24.1	0.0	6.4e-05	23.4	0.0	1.4	1	0	0	1	1	1	1	AAA	ATPase	domain
Zeta_toxin	PF06414.12	gi|408405287|ref|YP_006863270.1|	-	0.0013	18.0	0.0	0.0025	17.1	0.0	1.6	1	0	0	1	1	1	1	Zeta	toxin
AAA_21	PF13304.6	gi|408405287|ref|YP_006863270.1|	-	0.0025	17.7	0.4	0.21	11.4	0.1	2.1	1	1	0	2	2	2	1	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA	PF00004.29	gi|408405287|ref|YP_006863270.1|	-	0.0032	17.9	0.0	0.0061	17.0	0.0	1.6	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
EspG	PF06872.11	gi|408405287|ref|YP_006863270.1|	-	0.012	14.2	0.0	0.015	13.9	0.0	1.1	1	0	0	1	1	1	0	EspG	protein
TsaE	PF02367.17	gi|408405287|ref|YP_006863270.1|	-	0.014	15.3	0.0	0.025	14.6	0.0	1.3	1	0	0	1	1	1	0	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
AAA_33	PF13671.6	gi|408405287|ref|YP_006863270.1|	-	0.015	15.5	0.1	0.024	14.8	0.1	1.7	1	1	0	1	1	1	0	AAA	domain
TniB	PF05621.11	gi|408405287|ref|YP_006863270.1|	-	0.019	14.4	1.1	6	6.2	0.2	2.9	1	1	1	2	2	2	0	Bacterial	TniB	protein
APS_kinase	PF01583.20	gi|408405287|ref|YP_006863270.1|	-	0.022	14.7	0.1	0.13	12.2	0.0	2.0	2	0	0	2	2	2	0	Adenylylsulphate	kinase
Sigma54_activat	PF00158.26	gi|408405287|ref|YP_006863270.1|	-	0.023	14.4	0.0	0.041	13.6	0.0	1.4	1	0	0	1	1	1	0	Sigma-54	interaction	domain
AAA_29	PF13555.6	gi|408405287|ref|YP_006863270.1|	-	0.024	14.4	0.1	0.045	13.5	0.1	1.4	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
RsgA_GTPase	PF03193.16	gi|408405287|ref|YP_006863270.1|	-	0.025	14.5	0.0	0.043	13.7	0.0	1.3	1	0	0	1	1	1	0	RsgA	GTPase
AAA_30	PF13604.6	gi|408405287|ref|YP_006863270.1|	-	0.029	14.1	0.5	0.089	12.5	0.5	1.8	1	1	0	1	1	1	0	AAA	domain
AAA_18	PF13238.6	gi|408405287|ref|YP_006863270.1|	-	0.032	14.8	0.0	0.058	13.9	0.0	1.6	1	1	0	1	1	1	0	AAA	domain
AAA_5	PF07728.14	gi|408405287|ref|YP_006863270.1|	-	0.033	14.2	0.0	0.094	12.7	0.0	1.7	2	0	0	2	2	2	0	AAA	domain	(dynein-related	subfamily)
IFT81_CH	PF18383.1	gi|408405287|ref|YP_006863270.1|	-	0.037	14.3	0.0	0.082	13.2	0.0	1.6	1	0	0	1	1	1	0	Intraflagellar	transport	81	calponin	homology	domain
NACHT	PF05729.12	gi|408405287|ref|YP_006863270.1|	-	0.054	13.4	0.0	0.11	12.4	0.0	1.5	1	0	0	1	1	1	0	NACHT	domain
AAA_24	PF13479.6	gi|408405287|ref|YP_006863270.1|	-	0.06	13.1	0.0	0.085	12.6	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
AAA_7	PF12775.7	gi|408405287|ref|YP_006863270.1|	-	0.061	12.8	0.0	0.11	12.0	0.0	1.4	1	0	0	1	1	1	0	P-loop	containing	dynein	motor	region
GvpD	PF07088.11	gi|408405287|ref|YP_006863270.1|	-	0.069	11.8	0.0	0.095	11.3	0.0	1.2	1	0	0	1	1	1	0	GvpD	gas	vesicle	protein
AAA_25	PF13481.6	gi|408405287|ref|YP_006863270.1|	-	0.074	12.6	0.0	0.17	11.4	0.0	1.6	1	0	0	1	1	1	0	AAA	domain
SRP54	PF00448.22	gi|408405287|ref|YP_006863270.1|	-	0.092	12.4	0.0	0.46	10.1	0.0	1.9	2	0	0	2	2	2	0	SRP54-type	protein,	GTPase	domain
AAA_13	PF13166.6	gi|408405287|ref|YP_006863270.1|	-	0.092	11.4	0.0	4.2	5.9	0.0	2.1	2	0	0	2	2	2	0	AAA	domain
RNA_helicase	PF00910.22	gi|408405287|ref|YP_006863270.1|	-	0.17	12.2	0.0	0.3	11.5	0.0	1.4	1	0	0	1	1	1	0	RNA	helicase
DEAD	PF00270.29	gi|408405287|ref|YP_006863270.1|	-	0.21	11.3	0.4	0.74	9.6	0.4	2.0	1	1	0	1	1	1	0	DEAD/DEAH	box	helicase
Diphthami_syn_2	PF01902.17	gi|408405288|ref|YP_006863271.1|	-	3.6e-63	213.0	0.0	4.1e-63	212.8	0.0	1.0	1	0	0	1	1	1	1	Diphthamide	synthase
QueC	PF06508.13	gi|408405288|ref|YP_006863271.1|	-	0.031	13.8	0.0	0.07	12.6	0.0	1.6	1	0	0	1	1	1	0	Queuosine	biosynthesis	protein	QueC
tRNA_Me_trans	PF03054.16	gi|408405288|ref|YP_006863271.1|	-	0.09	11.6	0.0	0.12	11.1	0.0	1.2	1	0	0	1	1	1	0	tRNA	methyl	transferase
SRP54	PF00448.22	gi|408405289|ref|YP_006863272.1|	-	1e-71	240.6	1.1	1.6e-71	240.0	1.1	1.3	1	0	0	1	1	1	1	SRP54-type	protein,	GTPase	domain
SRP_SPB	PF02978.19	gi|408405289|ref|YP_006863272.1|	-	3.2e-22	79.0	7.5	4.6e-21	75.3	5.4	2.8	2	0	0	2	2	2	1	Signal	peptide	binding	domain
SRP54_N	PF02881.19	gi|408405289|ref|YP_006863272.1|	-	2.3e-18	66.2	1.7	3.1e-17	62.5	0.3	2.9	3	0	0	3	3	2	1	SRP54-type	protein,	helical	bundle	domain
CbiA	PF01656.23	gi|408405289|ref|YP_006863272.1|	-	2.3e-07	30.9	0.0	8.6e-07	29.1	0.0	2.0	1	1	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
cobW	PF02492.19	gi|408405289|ref|YP_006863272.1|	-	7e-06	25.7	1.4	8.3e-05	22.2	1.4	2.3	1	1	0	1	1	1	1	CobW/HypB/UreG,	nucleotide-binding	domain
AAA_22	PF13401.6	gi|408405289|ref|YP_006863272.1|	-	3.4e-05	24.2	0.1	0.00013	22.2	0.0	2.0	2	0	0	2	2	2	1	AAA	domain
ParA	PF10609.9	gi|408405289|ref|YP_006863272.1|	-	4.3e-05	23.1	0.2	0.00011	21.7	0.1	1.6	1	1	1	2	2	2	1	NUBPL	iron-transfer	P-loop	NTPase
MobB	PF03205.14	gi|408405289|ref|YP_006863272.1|	-	7.7e-05	22.6	0.1	0.00022	21.1	0.1	1.8	1	0	0	1	1	1	1	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
AAA_17	PF13207.6	gi|408405289|ref|YP_006863272.1|	-	0.00019	21.8	3.3	0.00021	21.8	0.1	2.6	2	1	0	2	2	2	1	AAA	domain
MeaB	PF03308.16	gi|408405289|ref|YP_006863272.1|	-	0.00019	20.5	2.6	0.00026	20.1	0.2	2.4	2	2	0	2	2	2	1	Methylmalonyl	Co-A	mutase-associated	GTPase	MeaB
6PF2K	PF01591.18	gi|408405289|ref|YP_006863272.1|	-	0.00033	20.0	0.0	0.00095	18.5	0.0	1.7	1	0	0	1	1	1	1	6-phosphofructo-2-kinase
AAA	PF00004.29	gi|408405289|ref|YP_006863272.1|	-	0.00034	21.0	0.1	0.0038	17.7	0.0	2.7	2	2	1	3	3	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
APS_kinase	PF01583.20	gi|408405289|ref|YP_006863272.1|	-	0.00059	19.8	0.0	0.0015	18.5	0.0	1.7	1	0	0	1	1	1	1	Adenylylsulphate	kinase
MMR_HSR1	PF01926.23	gi|408405289|ref|YP_006863272.1|	-	0.00077	19.5	0.3	0.0029	17.7	0.3	2.0	1	1	0	1	1	1	1	50S	ribosome-binding	GTPase
MipZ	PF09140.11	gi|408405289|ref|YP_006863272.1|	-	0.00077	18.8	1.0	0.079	12.2	1.0	2.5	1	1	0	1	1	1	1	ATPase	MipZ
CLP1_P	PF16575.5	gi|408405289|ref|YP_006863272.1|	-	0.001	18.9	0.1	0.72	9.6	0.0	2.4	1	1	1	2	2	2	2	mRNA	cleavage	and	polyadenylation	factor	CLP1	P-loop
AAA_31	PF13614.6	gi|408405289|ref|YP_006863272.1|	-	0.001	19.0	2.5	0.0063	16.4	0.3	2.7	2	1	0	2	2	2	1	AAA	domain
PduV-EutP	PF10662.9	gi|408405289|ref|YP_006863272.1|	-	0.0015	18.3	0.3	1.1	8.9	0.0	2.7	2	0	0	2	2	2	1	Ethanolamine	utilisation	-	propanediol	utilisation
AAA_30	PF13604.6	gi|408405289|ref|YP_006863272.1|	-	0.0031	17.2	0.2	0.0031	17.2	0.2	2.2	3	0	0	3	3	1	1	AAA	domain
AAA_33	PF13671.6	gi|408405289|ref|YP_006863272.1|	-	0.0045	17.2	0.0	0.0086	16.2	0.0	1.5	1	0	0	1	1	1	1	AAA	domain
Thymidylate_kin	PF02223.17	gi|408405289|ref|YP_006863272.1|	-	0.0059	16.3	0.2	0.024	14.3	0.2	2.0	2	0	0	2	2	2	1	Thymidylate	kinase
KTI12	PF08433.10	gi|408405289|ref|YP_006863272.1|	-	0.0062	16.0	0.0	0.017	14.6	0.0	1.7	2	0	0	2	2	1	1	Chromatin	associated	protein	KTI12
AAA_16	PF13191.6	gi|408405289|ref|YP_006863272.1|	-	0.0086	16.5	0.1	0.04	14.3	0.1	2.2	2	1	0	2	2	2	1	AAA	ATPase	domain
Methyltransf_18	PF12847.7	gi|408405289|ref|YP_006863272.1|	-	0.012	15.6	3.1	19	5.2	0.0	3.4	3	0	0	3	3	3	0	Methyltransferase	domain
ArsA_ATPase	PF02374.15	gi|408405289|ref|YP_006863272.1|	-	0.012	14.8	4.5	0.086	12.0	0.1	3.2	3	0	0	3	3	3	0	Anion-transporting	ATPase
VirC1	PF07015.11	gi|408405289|ref|YP_006863272.1|	-	0.012	14.9	0.0	0.024	14.0	0.0	1.4	1	0	0	1	1	1	0	VirC1	protein
LpxK	PF02606.14	gi|408405289|ref|YP_006863272.1|	-	0.015	14.4	0.5	0.032	13.3	0.5	1.5	1	0	0	1	1	1	0	Tetraacyldisaccharide-1-P	4'-kinase
SRPRB	PF09439.10	gi|408405289|ref|YP_006863272.1|	-	0.018	14.5	0.4	0.87	9.0	0.1	2.3	2	0	0	2	2	2	0	Signal	recognition	particle	receptor	beta	subunit
Zeta_toxin	PF06414.12	gi|408405289|ref|YP_006863272.1|	-	0.019	14.2	0.0	0.035	13.4	0.0	1.4	1	0	0	1	1	1	0	Zeta	toxin
AAA_18	PF13238.6	gi|408405289|ref|YP_006863272.1|	-	0.029	14.9	0.1	0.1	13.1	0.1	2.1	1	1	0	1	1	1	0	AAA	domain
AAA_26	PF13500.6	gi|408405289|ref|YP_006863272.1|	-	0.035	13.9	0.2	0.52	10.1	0.1	2.4	2	0	0	2	2	2	0	AAA	domain
Radical_SAM_N	PF08497.10	gi|408405289|ref|YP_006863272.1|	-	0.039	13.2	0.5	0.3	10.3	0.0	2.3	2	1	0	2	2	2	0	Radical	SAM	N-terminal
ATP_bind_1	PF03029.17	gi|408405289|ref|YP_006863272.1|	-	0.039	13.7	0.0	0.09	12.5	0.0	1.7	1	0	0	1	1	1	0	Conserved	hypothetical	ATP	binding	protein
AAA_24	PF13479.6	gi|408405289|ref|YP_006863272.1|	-	0.042	13.6	0.1	0.13	12.0	0.1	1.8	1	0	0	1	1	1	0	AAA	domain
Methyltransf_25	PF13649.6	gi|408405289|ref|YP_006863272.1|	-	0.049	14.3	0.0	0.37	11.5	0.0	2.3	2	0	0	2	2	2	0	Methyltransferase	domain
RNA_helicase	PF00910.22	gi|408405289|ref|YP_006863272.1|	-	0.051	14.0	0.0	0.18	12.2	0.0	1.9	1	1	0	1	1	1	0	RNA	helicase
IstB_IS21	PF01695.17	gi|408405289|ref|YP_006863272.1|	-	0.059	13.1	0.2	0.27	11.0	0.0	2.0	2	0	0	2	2	2	0	IstB-like	ATP	binding	protein
LytR_C	PF13399.6	gi|408405289|ref|YP_006863272.1|	-	0.098	13.6	0.0	0.6	11.1	0.0	2.3	2	0	0	2	2	2	0	LytR	cell	envelope-related	transcriptional	attenuator
NTPase_1	PF03266.15	gi|408405289|ref|YP_006863272.1|	-	0.15	12.0	7.6	0.52	10.2	2.6	3.1	2	1	0	2	2	2	0	NTPase
DUF4317	PF14199.6	gi|408405289|ref|YP_006863272.1|	-	0.16	11.1	2.2	0.46	9.6	0.7	2.1	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4317)
ResIII	PF04851.15	gi|408405289|ref|YP_006863272.1|	-	0.46	10.5	2.0	1.6	8.7	1.1	2.4	2	1	0	2	2	1	0	Type	III	restriction	enzyme,	res	subunit
THUMP	PF02926.17	gi|408405290|ref|YP_006863273.1|	-	2.3e-05	24.5	0.3	0.00038	20.6	0.1	2.2	2	0	0	2	2	2	1	THUMP	domain
DA1-like	PF12315.8	gi|408405291|ref|YP_006863274.1|	-	0.0093	15.4	0.2	0.015	14.7	0.2	1.3	1	0	0	1	1	1	1	Protein	DA1
Polbeta	PF18765.1	gi|408405292|ref|YP_006863275.1|	-	7.3e-07	29.2	0.0	1.6e-06	28.1	0.0	1.5	1	0	0	1	1	1	1	Polymerase	beta,	Nucleotidyltransferase
NTP_transf_2	PF01909.23	gi|408405292|ref|YP_006863275.1|	-	1.4e-05	25.2	0.0	3e-05	24.2	0.0	1.6	1	0	0	1	1	1	1	Nucleotidyltransferase	domain
Ribosomal_S27	PF01599.19	gi|408405293|ref|YP_006863276.1|	-	2.4e-21	75.6	5.0	3.3e-21	75.2	5.0	1.2	1	0	0	1	1	1	1	Ribosomal	protein	S27a
Ephrin_rec_like	PF07699.13	gi|408405293|ref|YP_006863276.1|	-	0.00034	20.3	1.2	0.0004	20.1	1.2	1.2	1	0	0	1	1	1	1	Putative	ephrin-receptor	like
Ribosomal_L37e	PF01907.19	gi|408405293|ref|YP_006863276.1|	-	0.0016	18.6	3.8	0.002	18.2	3.8	1.3	1	0	0	1	1	1	1	Ribosomal	protein	L37e
IBR	PF01485.21	gi|408405293|ref|YP_006863276.1|	-	0.0057	16.8	0.5	0.0068	16.6	0.5	1.2	1	0	0	1	1	1	1	IBR	domain,	a	half	RING-finger	domain
OrfB_Zn_ribbon	PF07282.11	gi|408405293|ref|YP_006863276.1|	-	0.0077	16.1	1.8	0.01	15.7	1.8	1.3	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
Baculo_ME53	PF06061.11	gi|408405293|ref|YP_006863276.1|	-	0.0099	15.1	1.0	0.011	15.1	1.0	1.0	1	0	0	1	1	1	1	Baculoviridae	ME53
GFA	PF04828.14	gi|408405293|ref|YP_006863276.1|	-	0.011	16.0	2.6	0.18	12.2	0.1	2.0	1	1	1	2	2	2	0	Glutathione-dependent	formaldehyde-activating	enzyme
DUF1451	PF07295.11	gi|408405293|ref|YP_006863276.1|	-	0.019	15.0	1.8	0.021	14.9	1.8	1.1	1	0	0	1	1	1	0	Zinc-ribbon	containing	domain
zinc_ribbon_13	PF09855.9	gi|408405293|ref|YP_006863276.1|	-	0.026	14.7	3.1	0.19	11.9	0.4	2.2	1	1	1	2	2	2	0	Nucleic-acid-binding	protein	containing	Zn-ribbon	domain	(DUF2082)
zf-CCHC_5	PF14787.6	gi|408405293|ref|YP_006863276.1|	-	0.026	14.2	0.6	0.026	14.2	0.6	2.0	2	0	0	2	2	2	0	GAG-polyprotein	viral	zinc-finger
zf-Mss51	PF13824.6	gi|408405293|ref|YP_006863276.1|	-	0.032	14.3	2.0	1.2	9.3	2.5	2.1	1	1	1	2	2	2	0	Zinc-finger	of	mitochondrial	splicing	suppressor	51
Zn_Tnp_IS1595	PF12760.7	gi|408405293|ref|YP_006863276.1|	-	0.037	14.0	4.7	0.068	13.2	4.6	1.5	1	1	0	1	1	1	0	Transposase	zinc-ribbon	domain
Lar_restr_allev	PF14354.6	gi|408405293|ref|YP_006863276.1|	-	0.063	13.7	2.6	0.1	13.0	2.6	1.4	1	0	0	1	1	1	0	Restriction	alleviation	protein	Lar
Nudix_N_2	PF14803.6	gi|408405293|ref|YP_006863276.1|	-	0.069	13.1	6.5	0.49	10.4	3.9	2.2	1	1	1	2	2	2	0	Nudix	N-terminal
HypA	PF01155.19	gi|408405293|ref|YP_006863276.1|	-	0.086	12.9	0.5	0.1	12.6	0.5	1.2	1	0	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
zf-NADH-PPase	PF09297.11	gi|408405293|ref|YP_006863276.1|	-	0.26	11.0	6.8	0.27	10.9	0.6	2.5	2	1	0	2	2	2	0	NADH	pyrophosphatase	zinc	ribbon	domain
zf_UBZ	PF18439.1	gi|408405293|ref|YP_006863276.1|	-	6.8	6.4	8.9	18	5.0	2.5	2.7	1	1	1	2	2	2	0	Ubiquitin-Binding	Zinc	Finger
Ribosomal_S24e	PF01282.19	gi|408405294|ref|YP_006863277.1|	-	7.5e-15	54.6	0.5	1.2e-14	54.0	0.5	1.3	1	0	0	1	1	1	1	Ribosomal	protein	S24e
Imm42	PF15593.6	gi|408405294|ref|YP_006863277.1|	-	0.11	13.0	0.0	0.16	12.4	0.0	1.3	1	1	0	1	1	1	0	Immunity	protein	42
Spore_GerQ	PF09671.10	gi|408405296|ref|YP_006863279.1|	-	0.1	12.7	0.0	0.12	12.4	0.0	1.2	1	0	0	1	1	1	0	Spore	coat	protein	(Spore_GerQ)
AAA	PF00004.29	gi|408405297|ref|YP_006863280.1|	-	0.00092	19.6	0.0	0.00099	19.5	0.0	1.1	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
UbiD	PF01977.16	gi|408405300|ref|YP_006863283.1|	-	3.1e-156	520.3	0.5	3.6e-156	520.1	0.5	1.0	1	0	0	1	1	1	1	3-octaprenyl-4-hydroxybenzoate	carboxy-lyase
DUF4751	PF15942.5	gi|408405300|ref|YP_006863283.1|	-	0.13	12.2	1.3	0.21	11.5	0.2	1.8	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4751)
Radical_SAM	PF04055.21	gi|408405301|ref|YP_006863284.1|	-	1.6e-17	64.4	0.1	3e-17	63.5	0.1	1.5	2	0	0	2	2	2	1	Radical	SAM	superfamily
Radical_SAM	PF04055.21	gi|408405302|ref|YP_006863285.1|	-	1.8e-13	51.2	0.1	4e-13	50.1	0.0	1.6	2	0	0	2	2	2	1	Radical	SAM	superfamily
DUF5460	PF17544.2	gi|408405302|ref|YP_006863285.1|	-	0.04	12.9	0.0	0.12	11.4	0.0	1.6	2	0	0	2	2	2	0	Family	of	unknown	function	(DUF5460)
Fer4_14	PF13394.6	gi|408405302|ref|YP_006863285.1|	-	0.05	13.7	0.0	0.11	12.6	0.0	1.5	1	0	0	1	1	1	0	4Fe-4S	single	cluster	domain
PKcGMP_CC	PF16808.5	gi|408405304|ref|YP_006863287.1|	-	0.049	13.5	0.6	0.09	12.6	0.6	1.4	1	0	0	1	1	1	0	Coiled-coil	N-terminus	of	cGMP-dependent	protein	kinase
Sugarporin_N	PF11471.8	gi|408405304|ref|YP_006863287.1|	-	0.11	12.5	0.0	0.15	12.0	0.0	1.2	1	0	0	1	1	1	0	Maltoporin	periplasmic	N-terminal	extension
Hemagglutinin	PF00509.18	gi|408405304|ref|YP_006863287.1|	-	0.11	10.8	0.0	0.14	10.6	0.0	1.0	1	0	0	1	1	1	0	Haemagglutinin
VasL	PF12486.8	gi|408405304|ref|YP_006863287.1|	-	0.12	12.2	0.0	0.16	11.9	0.0	1.1	1	0	0	1	1	1	0	Type	VI	secretion	system,	EvfB,	or	VasL
Trypsin_2	PF13365.6	gi|408405305|ref|YP_006863288.1|	-	6.2e-34	118.1	1.7	1.2e-33	117.1	1.7	1.5	1	0	0	1	1	1	1	Trypsin-like	peptidase	domain
Trypsin	PF00089.26	gi|408405305|ref|YP_006863288.1|	-	9.3e-15	55.0	0.3	2.4e-14	53.7	0.3	1.6	1	1	0	1	1	1	1	Trypsin
PDZ_2	PF13180.6	gi|408405305|ref|YP_006863288.1|	-	1.4e-13	51.0	0.0	4.1e-13	49.5	0.0	1.9	1	0	0	1	1	1	1	PDZ	domain
PDZ_6	PF17820.1	gi|408405305|ref|YP_006863288.1|	-	2.4e-06	27.3	4.6	2.7e-05	23.9	0.3	3.7	3	1	0	3	3	3	1	PDZ	domain
Peptidase_S29	PF02907.15	gi|408405305|ref|YP_006863288.1|	-	0.006	16.3	0.1	0.017	14.9	0.1	1.7	1	0	0	1	1	1	1	Hepatitis	C	virus	NS3	protease
PDZ	PF00595.24	gi|408405305|ref|YP_006863288.1|	-	0.018	15.4	0.5	0.79	10.1	0.3	3.3	2	1	0	2	2	2	0	PDZ	domain
S1_2	PF13509.6	gi|408405305|ref|YP_006863288.1|	-	0.081	13.0	0.1	0.21	11.6	0.1	1.8	1	0	0	1	1	1	0	S1	domain
Peptidase_S46	PF10459.9	gi|408405305|ref|YP_006863288.1|	-	0.28	9.8	0.6	0.43	9.1	0.6	1.3	1	0	0	1	1	1	0	Peptidase	S46
VitK2_biosynth	PF02621.14	gi|408405306|ref|YP_006863289.1|	-	2.3e-74	250.3	0.0	2.6e-74	250.1	0.0	1.0	1	0	0	1	1	1	1	Menaquinone	biosynthesis
SBP_bac_3	PF00497.20	gi|408405306|ref|YP_006863289.1|	-	0.077	12.4	0.0	0.15	11.5	0.0	1.4	1	0	0	1	1	1	0	Bacterial	extracellular	solute-binding	proteins,	family	3
GTP_EFTU	PF00009.27	gi|408405307|ref|YP_006863290.1|	-	6.8e-56	188.9	0.1	1.1e-55	188.2	0.1	1.3	1	0	0	1	1	1	1	Elongation	factor	Tu	GTP	binding	domain
EFG_C	PF00679.24	gi|408405307|ref|YP_006863290.1|	-	6.5e-21	74.2	0.0	1.5e-20	73.0	0.0	1.7	1	0	0	1	1	1	1	Elongation	factor	G	C-terminus
EFG_IV	PF03764.18	gi|408405307|ref|YP_006863290.1|	-	1.6e-20	73.0	0.0	1.4e-19	70.0	0.0	2.3	2	0	0	2	2	2	1	Elongation	factor	G,	domain	IV
EFG_II	PF14492.6	gi|408405307|ref|YP_006863290.1|	-	3e-19	68.9	0.5	5.9e-19	67.9	0.5	1.5	1	0	0	1	1	1	1	Elongation	Factor	G,	domain	II
GTP_EFTU_D2	PF03144.25	gi|408405307|ref|YP_006863290.1|	-	1.8e-12	47.5	0.1	5e-12	46.0	0.1	1.9	1	0	0	1	1	1	1	Elongation	factor	Tu	domain	2
MMR_HSR1	PF01926.23	gi|408405307|ref|YP_006863290.1|	-	0.0027	17.8	0.1	0.0075	16.4	0.1	1.8	1	0	0	1	1	1	1	50S	ribosome-binding	GTPase
PRMT5_TIM	PF17285.2	gi|408405308|ref|YP_006863291.1|	-	0.071	12.3	0.0	0.082	12.1	0.0	1.0	1	0	0	1	1	1	0	PRMT5	TIM	barrel	domain
Polyketide_cyc2	PF10604.9	gi|408405311|ref|YP_006863294.1|	-	7.2e-13	49.0	0.0	8.5e-13	48.8	0.0	1.0	1	0	0	1	1	1	1	Polyketide	cyclase	/	dehydrase	and	lipid	transport
Polyketide_cyc	PF03364.20	gi|408405311|ref|YP_006863294.1|	-	6.8e-11	42.5	0.0	8.2e-11	42.2	0.0	1.0	1	0	0	1	1	1	1	Polyketide	cyclase	/	dehydrase	and	lipid	transport
AHSA1	PF08327.11	gi|408405311|ref|YP_006863294.1|	-	0.021	15.0	0.0	0.033	14.4	0.0	1.4	1	1	0	1	1	1	0	Activator	of	Hsp90	ATPase	homolog	1-like	protein
HTH_46	PF15977.5	gi|408405312|ref|YP_006863295.1|	-	0.0063	16.5	0.2	1.8	8.7	0.0	2.1	2	0	0	2	2	2	2	Winged	helix-turn-helix	DNA	binding
Osmo_MPGsynth	PF09488.10	gi|408405314|ref|YP_006863297.1|	-	1.4e-157	524.4	0.0	1.6e-157	524.2	0.0	1.0	1	0	0	1	1	1	1	Mannosyl-3-phosphoglycerate	synthase	(osmo_MPGsynth)
HAD	PF12710.7	gi|408405315|ref|YP_006863298.1|	-	2.5e-13	50.8	0.0	3.7e-13	50.3	0.0	1.3	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Hydrolase	PF00702.26	gi|408405315|ref|YP_006863298.1|	-	1.5e-11	45.0	0.0	2e-07	31.5	0.0	2.2	1	1	1	2	2	2	2	haloacid	dehalogenase-like	hydrolase
Hydrolase_3	PF08282.12	gi|408405315|ref|YP_006863298.1|	-	5.1e-09	36.2	0.1	1.8e-07	31.2	0.0	2.3	2	1	0	2	2	2	1	haloacid	dehalogenase-like	hydrolase
Put_Phosphatase	PF06888.12	gi|408405315|ref|YP_006863298.1|	-	1.6e-05	24.5	0.1	5e-05	22.8	0.1	1.8	1	1	0	1	1	1	1	Putative	Phosphatase
HAD_2	PF13419.6	gi|408405315|ref|YP_006863298.1|	-	2.9e-05	24.2	0.4	0.032	14.3	0.0	3.0	2	1	0	2	2	2	2	Haloacid	dehalogenase-like	hydrolase
Hydrolase_like	PF13242.6	gi|408405315|ref|YP_006863298.1|	-	0.002	18.1	0.1	0.011	15.8	0.0	2.0	2	0	0	2	2	2	1	HAD-hyrolase-like
S6PP	PF05116.13	gi|408405315|ref|YP_006863298.1|	-	0.042	13.4	0.0	0.069	12.7	0.0	1.3	1	0	0	1	1	1	0	Sucrose-6F-phosphate	phosphohydrolase
DHFR_2	PF06442.11	gi|408405315|ref|YP_006863298.1|	-	0.075	12.9	0.0	13	5.7	0.0	2.7	3	0	0	3	3	3	0	R67	dihydrofolate	reductase
Asn_synthase	PF00733.21	gi|408405316|ref|YP_006863299.1|	-	4.3e-53	181.2	0.6	3e-32	112.7	0.1	2.2	1	1	1	2	2	2	2	Asparagine	synthase
GATase_6	PF13522.6	gi|408405316|ref|YP_006863299.1|	-	5.6e-33	114.0	0.0	1.2e-32	112.9	0.0	1.6	1	0	0	1	1	1	1	Glutamine	amidotransferase	domain
GATase_7	PF13537.6	gi|408405316|ref|YP_006863299.1|	-	7.5e-33	113.1	0.0	1.5e-32	112.1	0.0	1.5	1	0	0	1	1	1	1	Glutamine	amidotransferase	domain
NAD_synthase	PF02540.17	gi|408405316|ref|YP_006863299.1|	-	0.00025	20.3	0.1	0.00095	18.3	0.0	1.8	2	0	0	2	2	2	1	NAD	synthase
QueC	PF06508.13	gi|408405316|ref|YP_006863299.1|	-	0.0012	18.3	0.0	0.0031	17.1	0.0	1.7	1	0	0	1	1	1	1	Queuosine	biosynthesis	protein	QueC
PAPS_reduct	PF01507.19	gi|408405316|ref|YP_006863299.1|	-	0.0034	17.5	0.0	0.0076	16.3	0.0	1.6	1	0	0	1	1	1	1	Phosphoadenosine	phosphosulfate	reductase	family
tRNA_Me_trans	PF03054.16	gi|408405316|ref|YP_006863299.1|	-	0.081	11.7	0.2	0.21	10.4	0.2	1.7	1	1	0	1	1	1	0	tRNA	methyl	transferase
DUF188	PF02639.14	gi|408405316|ref|YP_006863299.1|	-	0.11	12.2	0.0	0.26	11.0	0.0	1.6	1	0	0	1	1	1	0	Uncharacterized	BCR,	YaiI/YqxD	family	COG1671
LPD22	PF18834.1	gi|408405316|ref|YP_006863299.1|	-	0.13	12.5	0.4	18	5.6	0.1	2.7	2	1	1	3	3	3	0	Large	polyvalent	protein	associated	domain	22
Mnd1	PF03962.15	gi|408405316|ref|YP_006863299.1|	-	0.27	11.6	2.3	0.76	10.1	0.1	2.8	3	0	0	3	3	3	0	Mnd1	HTH	domain
MerT	PF02411.15	gi|408405317|ref|YP_006863300.1|	-	5.7	7.0	14.4	0.076	13.0	4.5	2.9	1	1	1	3	3	3	0	MerT	mercuric	transport	protein
DNase-RNase	PF02577.14	gi|408405318|ref|YP_006863301.1|	-	2.9e-09	36.6	0.0	3.2e-09	36.5	0.0	1.1	1	0	0	1	1	1	1	Bifunctional	nuclease
DUF3463	PF11946.8	gi|408405319|ref|YP_006863302.1|	-	0.0008	19.2	0.4	0.001	18.9	0.4	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF3463)
SPASM	PF13186.6	gi|408405319|ref|YP_006863302.1|	-	0.027	15.0	0.8	0.05	14.1	0.8	1.4	1	0	0	1	1	1	0	Iron-sulfur	cluster-binding	domain
Radical_SAM	PF04055.21	gi|408405320|ref|YP_006863303.1|	-	7.6e-06	26.4	0.0	8.7e-06	26.2	0.0	1.0	1	0	0	1	1	1	1	Radical	SAM	superfamily
TBCC_N	PF16752.5	gi|408405320|ref|YP_006863303.1|	-	0.022	15.2	0.0	0.024	15.1	0.0	1.1	1	0	0	1	1	1	0	Tubulin-specific	chaperone	C	N-terminal	domain
DUF5098	PF17023.5	gi|408405320|ref|YP_006863303.1|	-	0.078	11.9	0.1	0.083	11.8	0.1	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF5098)
Radical_SAM	PF04055.21	gi|408405322|ref|YP_006863305.1|	-	9.9e-16	58.6	0.0	1.6e-15	57.9	0.0	1.3	1	0	0	1	1	1	1	Radical	SAM	superfamily
B12-binding	PF02310.19	gi|408405322|ref|YP_006863305.1|	-	0.0071	16.4	0.0	0.029	14.4	0.0	2.0	2	0	0	2	2	2	1	B12	binding	domain
CBP_BcsF	PF11120.8	gi|408405323|ref|YP_006863306.1|	-	0.00064	19.8	0.0	0.00074	19.6	0.0	1.1	1	0	0	1	1	1	1	Cellulose	biosynthesis	protein	BcsF
NinF	PF05810.12	gi|408405323|ref|YP_006863306.1|	-	0.018	14.9	0.1	0.022	14.6	0.1	1.2	1	0	0	1	1	1	0	NinF	protein
Copper-bind	PF00127.20	gi|408405324|ref|YP_006863307.1|	-	8.3e-06	26.2	0.0	1.5e-05	25.4	0.0	1.4	1	0	0	1	1	1	1	Copper	binding	proteins,	plastocyanin/azurin	family
Cupredoxin_1	PF13473.6	gi|408405324|ref|YP_006863307.1|	-	0.00055	20.0	0.0	0.0008	19.5	0.0	1.3	1	0	0	1	1	1	1	Cupredoxin-like	domain
PepSY	PF03413.19	gi|408405326|ref|YP_006863309.1|	-	5.5e-06	26.8	1.0	1.7e-05	25.3	1.0	1.7	1	1	0	1	1	1	1	Peptidase	propeptide	and	YPEB	domain
Phage_integrase	PF00589.22	gi|408405328|ref|YP_006863311.1|	-	0.00039	20.2	0.0	0.0027	17.5	0.0	2.0	1	1	0	1	1	1	1	Phage	integrase	family
Pyr_redox_2	PF07992.14	gi|408405329|ref|YP_006863312.1|	-	6e-09	35.5	0.0	6.6e-09	35.4	0.0	1.0	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
K_oxygenase	PF13434.6	gi|408405329|ref|YP_006863312.1|	-	0.0021	17.3	0.0	0.0023	17.1	0.0	1.1	1	0	0	1	1	1	1	L-lysine	6-monooxygenase	(NADPH-requiring)
Pyr_redox_3	PF13738.6	gi|408405329|ref|YP_006863312.1|	-	0.0038	16.5	0.0	0.0047	16.2	0.0	1.1	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_binding_9	PF13454.6	gi|408405329|ref|YP_006863312.1|	-	0.12	12.3	0.0	2.7	8.0	0.0	2.1	2	0	0	2	2	2	0	FAD-NAD(P)-binding
Pyr_redox_2	PF07992.14	gi|408405330|ref|YP_006863313.1|	-	7.4e-11	41.8	0.1	7.9e-11	41.7	0.1	1.1	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_dim	PF02852.22	gi|408405331|ref|YP_006863314.1|	-	1.4e-21	76.8	0.0	1.6e-21	76.7	0.0	1.0	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase,	dimerisation	domain
Thioredoxin_3	PF13192.6	gi|408405332|ref|YP_006863315.1|	-	1.6e-07	31.3	2.9	4.7e-07	29.8	2.9	1.9	1	1	0	1	1	1	1	Thioredoxin	domain
Thioredoxin_4	PF13462.6	gi|408405332|ref|YP_006863315.1|	-	0.052	13.7	0.4	3.1	7.9	0.0	2.1	1	1	1	2	2	2	0	Thioredoxin
Glutaredoxin	PF00462.24	gi|408405332|ref|YP_006863315.1|	-	0.11	12.7	0.2	0.34	11.2	0.2	1.9	1	1	0	1	1	1	0	Glutaredoxin
zf-ACC	PF17848.1	gi|408405332|ref|YP_006863315.1|	-	0.7	10.0	0.3	0.7	10.0	0.3	2.5	3	0	0	3	3	3	0	Acetyl-coA	carboxylase	zinc	finger	domain
RecR	PF02132.15	gi|408405332|ref|YP_006863315.1|	-	1.2	8.8	4.6	0.61	9.7	1.7	1.9	2	0	0	2	2	2	0	RecR	protein
Pyr_redox_2	PF07992.14	gi|408405333|ref|YP_006863316.1|	-	1.4e-63	214.9	0.2	1.7e-63	214.6	0.2	1.1	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_dim	PF02852.22	gi|408405333|ref|YP_006863316.1|	-	1.8e-29	102.2	0.7	4.4e-29	100.9	0.7	1.7	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase,	dimerisation	domain
Pyr_redox_3	PF13738.6	gi|408405333|ref|YP_006863316.1|	-	2.7e-19	69.6	2.8	1.1e-18	67.6	2.8	1.9	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox	PF00070.27	gi|408405333|ref|YP_006863316.1|	-	1.9e-17	63.5	2.2	2.2e-14	53.8	0.1	2.7	2	0	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
GIDA	PF01134.22	gi|408405333|ref|YP_006863316.1|	-	4.8e-10	39.1	6.0	8.1e-10	38.3	0.5	3.3	1	1	2	3	3	3	1	Glucose	inhibited	division	protein	A
HI0933_like	PF03486.14	gi|408405333|ref|YP_006863316.1|	-	2.7e-07	29.6	8.6	0.0065	15.2	1.8	3.8	3	1	1	4	4	4	2	HI0933-like	protein
FAD_oxidored	PF12831.7	gi|408405333|ref|YP_006863316.1|	-	1.9e-06	27.5	6.4	0.0001	21.8	1.9	2.6	2	1	0	2	2	2	2	FAD	dependent	oxidoreductase
FAD_binding_2	PF00890.24	gi|408405333|ref|YP_006863316.1|	-	6.9e-06	25.4	7.1	0.00035	19.8	2.4	2.7	2	1	1	3	3	3	2	FAD	binding	domain
K_oxygenase	PF13434.6	gi|408405333|ref|YP_006863316.1|	-	3.9e-05	23.0	0.9	0.1	11.7	0.0	3.1	2	1	1	3	3	3	2	L-lysine	6-monooxygenase	(NADPH-requiring)
NAD_binding_8	PF13450.6	gi|408405333|ref|YP_006863316.1|	-	0.00058	20.0	1.9	0.22	11.8	1.0	2.6	2	0	0	2	2	2	2	NAD(P)-binding	Rossmann-like	domain
Thi4	PF01946.17	gi|408405333|ref|YP_006863316.1|	-	0.017	14.4	2.5	0.029	13.6	0.5	2.3	3	0	0	3	3	3	0	Thi4	family
FAD_binding_3	PF01494.19	gi|408405333|ref|YP_006863316.1|	-	0.026	13.8	0.9	0.27	10.4	0.1	2.3	2	0	0	2	2	2	0	FAD	binding	domain
DAO	PF01266.24	gi|408405333|ref|YP_006863316.1|	-	0.057	13.0	5.0	1.9	8.0	5.0	2.4	1	1	0	1	1	1	0	FAD	dependent	oxidoreductase
AlaDh_PNT_C	PF01262.21	gi|408405333|ref|YP_006863316.1|	-	0.098	11.9	1.9	5.7	6.2	0.0	2.4	2	0	0	2	2	2	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
TrmB	PF01978.19	gi|408405333|ref|YP_006863316.1|	-	0.16	11.9	0.1	0.35	10.8	0.1	1.6	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
Bacteriocin_IIc	PF10439.9	gi|408405334|ref|YP_006863317.1|	-	0.023	14.8	10.2	0.033	14.3	10.2	1.1	1	0	0	1	1	1	0	Bacteriocin	class	II	with	double-glycine	leader	peptide
RseC_MucC	PF04246.12	gi|408405334|ref|YP_006863317.1|	-	0.13	12.2	0.0	0.17	11.8	0.0	1.2	1	0	0	1	1	1	0	Positive	regulator	of	sigma(E),	RseC/MucC
DUF4407	PF14362.6	gi|408405334|ref|YP_006863317.1|	-	1.7	8.0	3.8	1.8	7.9	3.4	1.3	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4407)
DUF3231	PF11553.8	gi|408405335|ref|YP_006863318.1|	-	1.4e-12	47.6	0.1	1.7e-12	47.2	0.1	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3231)
DEK_C	PF08766.11	gi|408405335|ref|YP_006863318.1|	-	0.033	14.1	0.1	0.063	13.2	0.1	1.5	1	0	0	1	1	1	0	DEK	C	terminal	domain
HxlR	PF01638.17	gi|408405336|ref|YP_006863319.1|	-	1.5e-21	76.1	0.1	1.8e-21	75.8	0.1	1.1	1	0	0	1	1	1	1	HxlR-like	helix-turn-helix
PadR	PF03551.14	gi|408405336|ref|YP_006863319.1|	-	0.0038	17.1	0.0	0.0053	16.7	0.0	1.3	1	0	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
B-block_TFIIIC	PF04182.12	gi|408405336|ref|YP_006863319.1|	-	0.041	14.0	0.0	0.05	13.8	0.0	1.3	1	0	0	1	1	1	0	B-block	binding	subunit	of	TFIIIC
HTH_24	PF13412.6	gi|408405336|ref|YP_006863319.1|	-	0.056	13.0	0.1	0.15	11.7	0.1	1.7	1	1	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
MarR	PF01047.22	gi|408405336|ref|YP_006863319.1|	-	0.061	13.3	0.0	0.088	12.7	0.0	1.2	1	0	0	1	1	1	0	MarR	family
DUF2627	PF11118.8	gi|408405337|ref|YP_006863320.1|	-	1.4	9.6	6.8	0.11	13.1	1.5	2.0	2	2	0	2	2	2	0	Protein	of	unknown	function	(DUF2627)
AhpC-TSA	PF00578.21	gi|408405338|ref|YP_006863321.1|	-	4.2e-14	52.5	0.1	1.7e-13	50.5	0.0	1.9	2	0	0	2	2	2	1	AhpC/TSA	family
Redoxin	PF08534.10	gi|408405338|ref|YP_006863321.1|	-	6.3e-12	45.4	0.2	1.5e-11	44.2	0.0	1.6	2	0	0	2	2	2	1	Redoxin
Thioredoxin_8	PF13905.6	gi|408405338|ref|YP_006863321.1|	-	3.6e-06	27.2	0.0	5.6e-06	26.6	0.0	1.3	1	0	0	1	1	1	1	Thioredoxin-like
SCO1-SenC	PF02630.14	gi|408405338|ref|YP_006863321.1|	-	5.5e-06	26.3	0.1	8.3e-06	25.8	0.1	1.4	1	0	0	1	1	1	1	SCO1/SenC
Thioredoxin	PF00085.20	gi|408405338|ref|YP_006863321.1|	-	3e-05	23.9	0.0	0.00015	21.7	0.0	1.9	2	0	0	2	2	2	1	Thioredoxin
Thioredoxin_7	PF13899.6	gi|408405338|ref|YP_006863321.1|	-	0.00034	20.7	0.1	0.00056	20.0	0.1	1.5	1	1	0	1	1	1	1	Thioredoxin-like
Thioredoxin_2	PF13098.6	gi|408405338|ref|YP_006863321.1|	-	0.0037	17.7	0.1	0.0068	16.8	0.1	1.5	1	1	0	1	1	1	1	Thioredoxin-like	domain
YpmT	PF17431.2	gi|408405339|ref|YP_006863322.1|	-	0.87	9.7	5.2	3.8	7.6	0.6	2.5	2	0	0	2	2	2	0	Uncharacterized	YmpT-like
YlaH	PF14036.6	gi|408405339|ref|YP_006863322.1|	-	8.3	6.8	8.9	0.39	11.1	0.8	2.4	2	1	0	2	2	2	0	YlaH-like	protein
DUF1297	PF06973.12	gi|408405340|ref|YP_006863323.1|	-	4.2e-74	248.2	0.0	5.9e-74	247.7	0.0	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1297)
DUF1246	PF06849.12	gi|408405340|ref|YP_006863323.1|	-	7.4e-49	164.8	0.0	2e-48	163.4	0.0	1.7	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF1246)
MttA_Hcf106	PF02416.16	gi|408405341|ref|YP_006863324.1|	-	6.3e-14	51.0	2.5	8.1e-14	50.7	1.6	1.5	1	1	1	2	2	2	1	mttA/Hcf106	family
TatC	PF00902.18	gi|408405342|ref|YP_006863325.1|	-	4.5e-49	167.1	18.2	5.3e-49	166.9	18.2	1.0	1	0	0	1	1	1	1	Sec-independent	protein	translocase	protein	(TatC)
DUF4407	PF14362.6	gi|408405345|ref|YP_006863328.1|	-	0.022	14.1	2.0	0.026	13.9	2.0	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4407)
DUF5082	PF16888.5	gi|408405345|ref|YP_006863328.1|	-	0.025	14.8	4.5	0.14	12.4	3.3	2.3	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF5082)
BLOC1_2	PF10046.9	gi|408405345|ref|YP_006863328.1|	-	0.039	14.3	3.0	0.17	12.2	0.8	2.2	2	0	0	2	2	2	0	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
HEAT_2	PF13646.6	gi|408405347|ref|YP_006863330.1|	-	6.5e-21	74.5	1.3	7.5e-11	42.3	0.4	2.0	1	1	1	2	2	2	2	HEAT	repeats
HEAT_PBS	PF03130.16	gi|408405347|ref|YP_006863330.1|	-	1.5e-13	50.1	1.8	0.0024	18.4	0.1	4.2	4	0	0	4	4	4	3	PBS	lyase	HEAT-like	repeat
HEAT	PF02985.22	gi|408405347|ref|YP_006863330.1|	-	1.3e-12	46.8	0.3	0.024	14.9	0.0	4.2	4	0	0	4	4	4	3	HEAT	repeat
HEAT_EZ	PF13513.6	gi|408405347|ref|YP_006863330.1|	-	4.2e-08	33.5	0.3	0.21	12.2	0.1	4.0	4	0	0	4	4	4	3	HEAT-like	repeat
Cnd1	PF12717.7	gi|408405347|ref|YP_006863330.1|	-	2.5e-07	30.9	0.0	0.011	15.7	0.0	3.4	1	1	3	4	4	4	2	non-SMC	mitotic	condensation	complex	subunit	1
Arm	PF00514.23	gi|408405347|ref|YP_006863330.1|	-	9.1e-05	22.4	0.6	0.48	10.6	0.1	4.0	3	1	1	4	4	4	1	Armadillo/beta-catenin-like	repeat
DUF2019	PF09450.10	gi|408405347|ref|YP_006863330.1|	-	0.0024	17.8	0.2	0.53	10.3	0.1	2.2	2	0	0	2	2	2	2	Domain	of	unknown	function	(DUF2019)
Adaptin_N	PF01602.20	gi|408405347|ref|YP_006863330.1|	-	0.015	13.9	0.1	2.8	6.4	0.0	2.2	1	1	1	2	2	2	0	Adaptin	N	terminal	region
TPR_16	PF13432.6	gi|408405347|ref|YP_006863330.1|	-	0.061	14.0	1.0	24	5.7	0.0	3.1	1	1	2	3	3	3	0	Tetratricopeptide	repeat
RICTOR_M	PF14666.6	gi|408405347|ref|YP_006863330.1|	-	0.11	12.2	0.0	0.32	10.8	0.0	1.7	2	0	0	2	2	2	0	Rapamycin-insensitive	companion	of	mTOR,	middle	domain
TrkH	PF02386.16	gi|408405349|ref|YP_006863332.1|	-	1.2e-31	109.8	26.5	6.1e-22	77.7	7.8	2.2	1	1	1	2	2	2	2	Cation	transport	protein
CBS	PF00571.28	gi|408405349|ref|YP_006863332.1|	-	6.8e-16	58.5	1.3	3.4e-08	33.8	0.0	3.1	3	0	0	3	3	3	2	CBS	domain
Potass_KdpF	PF09604.10	gi|408405349|ref|YP_006863332.1|	-	0.018	15.0	0.0	0.13	12.3	0.0	2.6	1	0	0	1	1	1	0	F	subunit	of	K+-transporting	ATPase	(Potass_KdpF)
MREG	PF15812.5	gi|408405349|ref|YP_006863332.1|	-	0.023	15.0	0.0	0.053	13.8	0.0	1.6	1	0	0	1	1	1	0	Melanoregulin
OrfB_Zn_ribbon	PF07282.11	gi|408405350|ref|YP_006863333.1|	-	9.7e-22	76.7	0.4	1.7e-21	75.9	0.4	1.4	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
OrfB_IS605	PF01385.19	gi|408405350|ref|YP_006863333.1|	-	2.7e-19	69.5	0.6	2.7e-19	69.5	0.6	1.6	2	0	0	2	2	2	1	Probable	transposase
DUF2229	PF09989.9	gi|408405350|ref|YP_006863333.1|	-	0.031	13.9	0.1	0.054	13.1	0.1	1.4	1	0	0	1	1	1	0	CoA	enzyme	activase	uncharacterised	domain	(DUF2229)
BAR	PF03114.18	gi|408405350|ref|YP_006863333.1|	-	0.039	13.6	0.8	0.068	12.8	0.8	1.3	1	0	0	1	1	1	0	BAR	domain
CxC3	PF18804.1	gi|408405350|ref|YP_006863333.1|	-	0.046	13.6	0.2	0.098	12.5	0.1	1.5	2	0	0	2	2	2	0	CxC3	like	cysteine	cluster	associated	with	KDZ	transposases
HTH_OrfB_IS605	PF12323.8	gi|408405351|ref|YP_006863334.1|	-	7.6e-14	50.9	0.0	1.7e-13	49.8	0.0	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain
Y1_Tnp	PF01797.16	gi|408405352|ref|YP_006863335.1|	-	4.4e-10	39.7	0.0	4.9e-10	39.6	0.0	1.0	1	0	0	1	1	1	1	Transposase	IS200	like
Y1_Tnp	PF01797.16	gi|408405353|ref|YP_006863336.1|	-	1.5e-07	31.6	0.3	1.6e-07	31.5	0.3	1.0	1	0	0	1	1	1	1	Transposase	IS200	like
MoCF_biosynth	PF00994.24	gi|408405353|ref|YP_006863336.1|	-	0.1	12.2	0.0	0.1	12.2	0.0	1.0	1	0	0	1	1	1	0	Probable	molybdopterin	binding	domain
ABC-3	PF00950.17	gi|408405354|ref|YP_006863337.1|	-	1.5e-70	237.6	37.8	1.7e-70	237.5	37.8	1.0	1	0	0	1	1	1	1	ABC	3	transport	family
FecCD	PF01032.18	gi|408405354|ref|YP_006863337.1|	-	1.6e-10	40.5	38.2	3.2e-10	39.5	26.5	2.1	1	1	0	2	2	2	2	FecCD	transport	family
Coatomer_g_Cpla	PF16381.5	gi|408405354|ref|YP_006863337.1|	-	0.086	13.0	0.0	0.18	11.9	0.0	1.5	1	0	0	1	1	1	0	Coatomer	subunit	gamma-1	C-terminal	appendage	platform
ABC_tran	PF00005.27	gi|408405355|ref|YP_006863338.1|	-	1.2e-33	116.6	0.0	2.7e-33	115.4	0.0	1.5	2	0	0	2	2	2	1	ABC	transporter
AAA_21	PF13304.6	gi|408405355|ref|YP_006863338.1|	-	8.7e-11	42.2	0.0	0.00028	20.8	0.0	2.1	1	1	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|408405355|ref|YP_006863338.1|	-	0.00035	20.1	0.5	0.0081	15.6	0.5	2.1	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_23	PF13476.6	gi|408405355|ref|YP_006863338.1|	-	0.0011	19.5	1.7	0.0019	18.7	1.7	1.7	1	1	0	1	1	1	1	AAA	domain
Mg_chelatase	PF01078.21	gi|408405355|ref|YP_006863338.1|	-	0.0038	16.6	0.0	0.0067	15.8	0.0	1.3	1	0	0	1	1	1	1	Magnesium	chelatase,	subunit	ChlI
RsgA_GTPase	PF03193.16	gi|408405355|ref|YP_006863338.1|	-	0.004	17.1	0.1	0.045	13.6	0.0	2.2	2	1	0	2	2	2	1	RsgA	GTPase
SbcCD_C	PF13558.6	gi|408405355|ref|YP_006863338.1|	-	0.0088	16.3	0.1	0.36	11.1	0.1	2.3	1	1	0	1	1	1	1	Putative	exonuclease	SbcCD,	C	subunit
AAA	PF00004.29	gi|408405355|ref|YP_006863338.1|	-	0.021	15.3	0.9	0.36	11.3	0.9	2.3	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
T2SSE	PF00437.20	gi|408405355|ref|YP_006863338.1|	-	0.026	13.6	0.0	0.039	13.0	0.0	1.4	1	0	0	1	1	1	0	Type	II/IV	secretion	system	protein
AAA_30	PF13604.6	gi|408405355|ref|YP_006863338.1|	-	0.026	14.3	0.0	0.041	13.6	0.0	1.4	1	1	0	1	1	1	0	AAA	domain
AAA_29	PF13555.6	gi|408405355|ref|YP_006863338.1|	-	0.034	13.9	0.1	0.076	12.8	0.1	1.5	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
MMR_HSR1	PF01926.23	gi|408405355|ref|YP_006863338.1|	-	0.046	13.8	0.2	0.25	11.4	0.2	2.2	1	1	0	1	1	1	0	50S	ribosome-binding	GTPase
AAA_33	PF13671.6	gi|408405355|ref|YP_006863338.1|	-	0.07	13.3	0.0	0.7	10.0	0.0	2.0	2	0	0	2	2	2	0	AAA	domain
AAA_27	PF13514.6	gi|408405355|ref|YP_006863338.1|	-	0.081	12.5	0.0	0.15	11.6	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
TniB	PF05621.11	gi|408405355|ref|YP_006863338.1|	-	0.12	11.7	0.2	0.45	9.9	0.0	1.9	2	0	0	2	2	2	0	Bacterial	TniB	protein
ZnuA	PF01297.17	gi|408405356|ref|YP_006863339.1|	-	1.7e-78	263.6	0.0	2e-78	263.4	0.0	1.0	1	0	0	1	1	1	1	Zinc-uptake	complex	component	A	periplasmic
NikR_C	PF08753.11	gi|408405357|ref|YP_006863340.1|	-	9.1e-13	48.2	0.9	1.4e-12	47.6	0.9	1.3	1	0	0	1	1	1	1	NikR	C	terminal	nickel	binding	domain
RHH_1	PF01402.21	gi|408405357|ref|YP_006863340.1|	-	8.3e-07	28.7	0.5	3.4e-06	26.8	0.2	2.0	2	0	0	2	2	2	1	Ribbon-helix-helix	protein,	copG	family
VapB_antitoxin	PF09957.9	gi|408405357|ref|YP_006863340.1|	-	0.0061	16.4	0.4	0.024	14.5	0.2	1.9	2	0	0	2	2	2	1	Bacterial	antitoxin	of	type	II	TA	system,	VapB
ParD_antitoxin	PF03693.14	gi|408405357|ref|YP_006863340.1|	-	0.13	12.7	0.6	0.34	11.4	0.1	1.9	1	1	1	2	2	2	0	Bacterial	antitoxin	of	ParD	toxin-antitoxin	type	II	system	and	RHH
Response_reg	PF00072.24	gi|408405360|ref|YP_006863343.1|	-	6.2e-11	42.5	0.0	7.4e-11	42.2	0.0	1.1	1	0	0	1	1	1	1	Response	regulator	receiver	domain
HATPase_c	PF02518.26	gi|408405362|ref|YP_006863345.1|	-	6.2e-28	97.6	0.5	2.3e-27	95.7	0.5	2.0	2	0	0	2	2	2	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
dCache_1	PF02743.18	gi|408405362|ref|YP_006863345.1|	-	5.6e-16	59.1	4.8	5.6e-16	59.1	4.8	2.1	2	0	0	2	2	2	1	Cache	domain
HisKA	PF00512.25	gi|408405362|ref|YP_006863345.1|	-	5.2e-10	39.2	0.1	1.2e-09	38.1	0.1	1.7	1	0	0	1	1	1	1	His	Kinase	A	(phospho-acceptor)	domain
HAMP	PF00672.25	gi|408405362|ref|YP_006863345.1|	-	2.9e-09	37.2	0.0	8e-09	35.8	0.0	1.7	1	0	0	1	1	1	1	HAMP	domain
HATPase_c_5	PF14501.6	gi|408405362|ref|YP_006863345.1|	-	0.00055	19.8	0.0	0.0018	18.1	0.0	1.9	1	0	0	1	1	1	1	GHKL	domain
HATPase_c_3	PF13589.6	gi|408405362|ref|YP_006863345.1|	-	0.027	14.3	0.0	0.056	13.3	0.0	1.5	1	0	0	1	1	1	0	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HATPase_c_2	PF13581.6	gi|408405362|ref|YP_006863345.1|	-	0.15	12.0	0.0	0.3	11.1	0.0	1.4	1	0	0	1	1	1	0	Histidine	kinase-like	ATPase	domain
ArlS_N	PF18719.1	gi|408405362|ref|YP_006863345.1|	-	0.23	11.7	2.9	4	7.6	0.6	2.6	2	0	0	2	2	2	0	ArlS	sensor	domain
Response_reg	PF00072.24	gi|408405363|ref|YP_006863346.1|	-	2.6e-19	69.4	0.0	3.3e-19	69.1	0.0	1.1	1	0	0	1	1	1	1	Response	regulator	receiver	domain
Phage_int_SAM_6	PF18644.1	gi|408405367|ref|YP_006863350.1|	-	0.0068	16.4	0.3	0.088	12.8	0.0	2.0	2	0	0	2	2	2	1	Phage	integrase	SAM-like	domain
HEPN_AbiV	PF18728.1	gi|408405368|ref|YP_006863351.1|	-	5.4e-26	91.7	1.4	9.5e-26	90.9	1.4	1.4	1	0	0	1	1	1	1	AbiV
DUF716	PF04819.12	gi|408405369|ref|YP_006863352.1|	-	0.0046	16.6	3.3	0.0046	16.6	3.3	1.8	2	0	0	2	2	2	1	Family	of	unknown	function	(DUF716)
DUF2189	PF09955.9	gi|408405369|ref|YP_006863352.1|	-	0.0091	16.2	2.0	0.019	15.2	0.1	2.1	1	1	1	2	2	2	1	Predicted	integral	membrane	protein	(DUF2189)
DUF996	PF06195.13	gi|408405369|ref|YP_006863352.1|	-	0.018	15.3	4.1	0.018	15.3	4.1	2.2	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF996)
DUF2208	PF09973.9	gi|408405369|ref|YP_006863352.1|	-	0.11	12.0	6.0	0.28	10.8	6.0	1.6	1	1	0	1	1	1	0	Predicted	membrane	protein	(DUF2208)
TMEM100	PF16311.5	gi|408405369|ref|YP_006863352.1|	-	0.24	11.0	0.8	0.4	10.3	0.8	1.3	1	0	0	1	1	1	0	Transmembrane	protein	100
Peptidase_U4	PF03419.13	gi|408405369|ref|YP_006863352.1|	-	5.2	6.3	11.5	0.32	10.2	6.0	1.6	2	0	0	2	2	2	0	Sporulation	factor	SpoIIGA
DUF723	PF05265.13	gi|408405370|ref|YP_006863353.1|	-	0.77	9.7	3.1	4.1	7.4	3.1	2.0	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF723)
DUF72	PF01904.18	gi|408405372|ref|YP_006863355.1|	-	8.1e-42	143.8	0.1	9.6e-42	143.6	0.1	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF72
ASH	PF15780.5	gi|408405373|ref|YP_006863356.1|	-	0.0047	17.1	0.0	0.016	15.4	0.0	1.9	1	0	0	1	1	1	1	Abnormal	spindle-like	microcephaly-assoc'd,	ASPM-SPD-2-Hydin
Pyrid_oxidase_2	PF13883.6	gi|408405373|ref|YP_006863356.1|	-	0.064	13.2	0.2	0.17	11.9	0.2	1.7	1	0	0	1	1	1	0	Pyridoxamine	5'-phosphate	oxidase
Rad51	PF08423.11	gi|408405374|ref|YP_006863357.1|	-	4e-06	26.3	0.1	5e-06	26.0	0.1	1.2	1	0	0	1	1	1	1	Rad51
CbiX	PF01903.17	gi|408405375|ref|YP_006863358.1|	-	0.099	13.0	0.0	0.099	13.0	0.0	1.2	1	1	0	1	1	1	0	CbiX
DNA_pol_B	PF00136.21	gi|408405377|ref|YP_006863360.1|	-	7.8e-35	120.5	0.9	1.5e-34	119.5	0.3	1.7	2	0	0	2	2	2	1	DNA	polymerase	family	B
DNA_pol_B_exo1	PF03104.19	gi|408405377|ref|YP_006863360.1|	-	1.2e-09	37.8	0.1	4.4e-07	29.3	0.1	2.4	1	1	1	2	2	2	2	DNA	polymerase	family	B,	exonuclease	domain
EcoRII-C	PF09019.11	gi|408405379|ref|YP_006863362.1|	-	4.2e-15	56.2	0.7	6.7e-15	55.6	0.7	1.3	1	0	0	1	1	1	1	EcoRII	C	terminal
DpnII	PF04556.12	gi|408405379|ref|YP_006863362.1|	-	0.012	14.9	0.4	0.043	13.1	0.4	1.8	1	1	0	1	1	1	0	DpnII	restriction	endonuclease
RE_BsaWI	PF18643.1	gi|408405379|ref|YP_006863362.1|	-	0.027	14.4	0.5	0.089	12.7	0.5	1.9	1	1	0	1	1	1	0	BsaWI	restriction	endonuclease	type	2
Peptidase_C39_2	PF13529.6	gi|408405379|ref|YP_006863362.1|	-	0.095	13.2	0.0	0.17	12.4	0.0	1.4	1	0	0	1	1	1	0	Peptidase_C39	like	family
N6_N4_Mtase	PF01555.18	gi|408405380|ref|YP_006863363.1|	-	2.9e-11	43.5	0.1	6.4e-09	35.8	0.0	2.6	2	1	0	2	2	2	2	DNA	methylase
UPF0020	PF01170.18	gi|408405380|ref|YP_006863363.1|	-	1.8e-07	31.1	0.0	1.2e-05	25.1	0.0	2.4	2	0	0	2	2	2	1	Putative	RNA	methylase	family	UPF0020
MethyltransfD12	PF02086.15	gi|408405380|ref|YP_006863363.1|	-	0.013	15.2	0.0	0.029	14.0	0.0	1.6	1	1	0	1	1	1	0	D12	class	N6	adenine-specific	DNA	methyltransferase
N6_Mtase	PF02384.16	gi|408405380|ref|YP_006863363.1|	-	0.059	12.6	0.0	0.18	11.0	0.0	1.9	1	0	0	1	1	1	0	N-6	DNA	Methylase
Cons_hypoth95	PF03602.15	gi|408405380|ref|YP_006863363.1|	-	0.091	12.4	0.0	0.23	11.1	0.0	1.6	2	0	0	2	2	2	0	Conserved	hypothetical	protein	95
Translin	PF01997.16	gi|408405381|ref|YP_006863364.1|	-	0.0068	16.4	0.2	0.0081	16.2	0.2	1.1	1	0	0	1	1	1	1	Translin	family
MarR	PF01047.22	gi|408405382|ref|YP_006863365.1|	-	0.015	15.2	0.0	0.059	13.3	0.0	1.9	2	0	0	2	2	2	0	MarR	family
HTH_45	PF14947.6	gi|408405382|ref|YP_006863365.1|	-	0.015	15.3	0.0	0.039	13.9	0.0	1.7	1	0	0	1	1	1	0	Winged	helix-turn-helix
HTH_5	PF01022.20	gi|408405382|ref|YP_006863365.1|	-	0.06	13.2	0.0	0.13	12.1	0.0	1.5	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
zf-RanBP	PF00641.18	gi|408405383|ref|YP_006863366.1|	-	2.8	7.3	8.5	0.097	12.0	0.7	2.1	2	0	0	2	2	2	0	Zn-finger	in	Ran	binding	protein	and	others
Rpr2	PF04032.16	gi|408405386|ref|YP_006863369.1|	-	0.081	13.2	1.0	4.6	7.6	0.6	3.0	2	1	0	2	2	2	0	RNAse	P	Rpr2/Rpp21/SNM1	subunit	domain
Turandot	PF07240.11	gi|408405387|ref|YP_006863370.1|	-	0.043	13.8	0.0	0.098	12.6	0.1	1.6	2	0	0	2	2	2	0	Stress-inducible	humoral	factor	Turandot
WW_like	PF17890.1	gi|408405387|ref|YP_006863370.1|	-	0.14	12.2	0.1	16	5.7	0.0	2.3	1	1	1	2	2	2	0	Peptidoglycan	hydrolase	LytB	WW-like	domain
DDE_Tnp_1	PF01609.21	gi|408405388|ref|YP_006863371.1|	-	0.0002	21.1	0.0	0.00041	20.0	0.0	1.6	1	1	0	1	1	1	1	Transposase	DDE	domain
DUF1815	PF08844.10	gi|408405388|ref|YP_006863371.1|	-	0.17	11.9	0.2	0.87	9.6	0.1	2.0	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF1815)
zf_CopZ	PF18423.1	gi|408405390|ref|YP_006863373.1|	-	0.16	11.9	0.5	0.39	10.7	0.1	1.9	2	0	0	2	2	2	0	Zinc	binding	domain
LPG_synthase_TM	PF03706.13	gi|408405391|ref|YP_006863374.1|	-	0.00096	18.8	0.5	0.001	18.7	0.5	1.0	1	0	0	1	1	1	1	Lysylphosphatidylglycerol	synthase	TM	region
MARVEL	PF01284.23	gi|408405391|ref|YP_006863374.1|	-	0.0047	17.0	0.2	0.0055	16.7	0.2	1.1	1	0	0	1	1	1	1	Membrane-associating	domain
ExoD	PF06055.12	gi|408405391|ref|YP_006863374.1|	-	0.008	15.6	2.1	0.0097	15.3	2.1	1.1	1	0	0	1	1	1	1	Exopolysaccharide	synthesis,	ExoD
DUF998	PF06197.13	gi|408405391|ref|YP_006863374.1|	-	0.016	14.8	2.9	0.019	14.6	2.9	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF998)
DUF418	PF04235.12	gi|408405391|ref|YP_006863374.1|	-	0.019	14.9	0.3	0.02	14.8	0.3	1.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF418)
CoA_binding_3	PF13727.6	gi|408405391|ref|YP_006863374.1|	-	0.024	14.7	0.2	0.028	14.4	0.2	1.0	1	0	0	1	1	1	0	CoA-binding	domain
DUF3487	PF11990.8	gi|408405391|ref|YP_006863374.1|	-	0.033	14.1	0.9	0.038	13.9	0.9	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3487)
DUF202	PF02656.15	gi|408405391|ref|YP_006863374.1|	-	0.12	12.8	6.8	0.49	10.9	6.6	2.4	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF202)
Phage_holin_3_6	PF07332.11	gi|408405391|ref|YP_006863374.1|	-	1.3	9.0	6.4	1.9	8.5	6.4	1.4	1	1	0	1	1	1	0	Putative	Actinobacterial	Holin-X,	holin	superfamily	III
ITI_HC_C	PF06668.12	gi|408405393|ref|YP_006863376.1|	-	0.037	13.7	0.7	0.19	11.3	0.5	2.0	2	0	0	2	2	2	0	Inter-alpha-trypsin	inhibitor	heavy	chain	C-terminus
SUa-2TM	PF18179.1	gi|408405393|ref|YP_006863376.1|	-	0.056	12.7	0.6	0.078	12.3	0.6	1.2	1	0	0	1	1	1	0	SMODS-	and	Ubiquitin	system-associated	2TM	effector	domain
Ribosomal_L6e	PF01159.19	gi|408405393|ref|YP_006863376.1|	-	0.21	12.1	6.2	0.39	11.3	6.2	1.4	1	0	0	1	1	1	0	Ribosomal	protein	L6e
Prp18	PF02840.15	gi|408405393|ref|YP_006863376.1|	-	0.26	11.3	4.7	0.45	10.5	4.7	1.3	1	0	0	1	1	1	0	Prp18	domain
FlgM	PF04316.13	gi|408405395|ref|YP_006863378.1|	-	0.06	13.7	0.0	0.077	13.4	0.0	1.2	1	0	0	1	1	1	0	Anti-sigma-28	factor,	FlgM
DUF148	PF02520.17	gi|408405396|ref|YP_006863379.1|	-	0.088	12.9	0.0	0.11	12.6	0.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	DUF148
Tna_leader	PF08053.11	gi|408405396|ref|YP_006863379.1|	-	0.31	11.1	0.9	2.7	8.1	0.0	2.2	2	0	0	2	2	2	0	Tryptophanase	operon	leader	peptide
DUF2225	PF09986.9	gi|408405397|ref|YP_006863380.1|	-	0.0024	17.6	0.1	0.0063	16.3	0.1	1.7	1	0	0	1	1	1	1	Uncharacterized	protein	conserved	in	bacteria	(DUF2225)
DUF3338	PF11819.8	gi|408405397|ref|YP_006863380.1|	-	0.017	15.1	1.0	1.4	8.9	0.6	2.5	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF3338)
APG6_N	PF17675.1	gi|408405397|ref|YP_006863380.1|	-	0.023	15.2	0.7	0.023	15.2	0.7	2.2	2	0	0	2	2	2	0	Apg6	coiled-coil	region
DUF4327	PF14217.6	gi|408405397|ref|YP_006863380.1|	-	0.033	14.3	0.6	7.8	6.7	0.0	2.7	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4327)
DZR	PF12773.7	gi|408405397|ref|YP_006863380.1|	-	0.043	13.8	1.1	0.092	12.8	1.1	1.4	1	0	0	1	1	1	0	Double	zinc	ribbon
DUF5644	PF18712.1	gi|408405397|ref|YP_006863380.1|	-	0.064	13.3	0.1	0.22	11.6	0.1	1.9	1	0	0	1	1	1	0	Family	of	unknown	function	(DUF5644)
Phage_int_SAM_6	PF18644.1	gi|408405397|ref|YP_006863380.1|	-	0.079	13.0	2.2	0.34	10.9	0.4	2.7	2	1	0	2	2	2	0	Phage	integrase	SAM-like	domain
GIT_CC	PF16559.5	gi|408405397|ref|YP_006863380.1|	-	0.66	9.9	6.2	0.25	11.2	2.4	2.2	2	0	0	2	2	2	0	GIT	coiled-coil	Rho	guanine	nucleotide	exchange	factor
KxDL	PF10241.9	gi|408405397|ref|YP_006863380.1|	-	0.7	10.2	6.5	1.7	9.0	0.2	3.5	3	0	0	3	3	3	0	Uncharacterized	conserved	protein
DivIC	PF04977.15	gi|408405397|ref|YP_006863380.1|	-	4.9	7.0	7.7	1.1	9.1	2.3	2.5	2	0	0	2	2	2	0	Septum	formation	initiator
Spherulin4	PF12138.8	gi|408405398|ref|YP_006863381.1|	-	3.2e-15	56.4	0.5	4.8e-15	55.9	0.5	1.3	1	0	0	1	1	1	1	Spherulation-specific	family	4
DPRP	PF04244.13	gi|408405398|ref|YP_006863381.1|	-	0.03	14.2	0.0	0.044	13.6	0.0	1.2	1	0	0	1	1	1	0	Deoxyribodipyrimidine	photo-lyase-related	protein
zf-UBR	PF02207.20	gi|408405400|ref|YP_006863383.1|	-	0.0073	16.5	0.4	0.0076	16.4	0.4	1.1	1	0	0	1	1	1	1	Putative	zinc	finger	in	N-recognin	(UBR	box)
Cyclase	PF04199.13	gi|408405403|ref|YP_006863386.1|	-	1.7e-31	109.2	0.0	2.1e-31	109.0	0.0	1.1	1	0	0	1	1	1	1	Putative	cyclase
DUF2399	PF09664.10	gi|408405403|ref|YP_006863386.1|	-	0.074	13.0	0.0	1.2	9.0	0.0	2.2	2	0	0	2	2	2	0	Protein	of	unknown	function	C-terminus	(DUF2399)
AsnC_trans_reg	PF01037.21	gi|408405404|ref|YP_006863387.1|	-	3.1e-13	49.5	0.2	3.5e-13	49.3	0.2	1.0	1	0	0	1	1	1	1	Lrp/AsnC	ligand	binding	domain
NapD	PF03927.13	gi|408405404|ref|YP_006863387.1|	-	0.06	13.4	0.1	0.094	12.8	0.1	1.3	1	1	0	1	1	1	0	NapD	protein
Ribosomal_L10	PF00466.20	gi|408405404|ref|YP_006863387.1|	-	0.082	13.1	0.1	0.099	12.8	0.1	1.1	1	0	0	1	1	1	0	Ribosomal	protein	L10
Aminotran_5	PF00266.19	gi|408405405|ref|YP_006863388.1|	-	9.8e-69	232.1	0.0	1.2e-68	231.8	0.0	1.0	1	0	0	1	1	1	1	Aminotransferase	class-V
Aminotran_1_2	PF00155.21	gi|408405405|ref|YP_006863388.1|	-	7.6e-06	25.3	0.0	1.2e-05	24.7	0.0	1.2	1	0	0	1	1	1	1	Aminotransferase	class	I	and	II
DegT_DnrJ_EryC1	PF01041.17	gi|408405405|ref|YP_006863388.1|	-	0.0029	17.0	0.0	0.015	14.7	0.0	1.9	2	0	0	2	2	2	1	DegT/DnrJ/EryC1/StrS	aminotransferase	family
HTH_45	PF14947.6	gi|408405407|ref|YP_006863390.1|	-	1.3e-11	44.3	1.6	1.6e-11	44.0	1.6	1.0	1	0	0	1	1	1	1	Winged	helix-turn-helix
DUF4364	PF14277.6	gi|408405407|ref|YP_006863390.1|	-	0.00071	19.4	0.4	0.00079	19.2	0.4	1.0	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4364)
BaxI_1	PF12811.7	gi|408405408|ref|YP_006863391.1|	-	0.011	15.3	5.4	0.021	14.4	5.4	1.5	1	1	0	1	1	1	0	Bax	inhibitor	1	like
OST3_OST6	PF04756.13	gi|408405408|ref|YP_006863391.1|	-	0.091	12.1	5.2	0.11	11.8	5.2	1.2	1	0	0	1	1	1	0	OST3	/	OST6	family,	transporter	family
B12D	PF06522.11	gi|408405408|ref|YP_006863391.1|	-	0.22	11.3	0.0	0.22	11.3	0.0	2.0	3	0	0	3	3	3	0	NADH-ubiquinone	reductase	complex	1	MLRQ	subunit
Cpn60_TCP1	PF00118.24	gi|408405410|ref|YP_006863393.1|	-	3.9e-183	609.6	21.3	4.5e-183	609.4	21.3	1.0	1	0	0	1	1	1	1	TCP-1/cpn60	chaperonin	family
TPP_enzyme_M	PF00205.22	gi|408405410|ref|YP_006863393.1|	-	0.029	14.1	0.2	2	8.1	0.0	2.7	2	0	0	2	2	2	0	Thiamine	pyrophosphate	enzyme,	central	domain
DUF1861	PF08950.10	gi|408405410|ref|YP_006863393.1|	-	0.033	13.4	0.0	0.06	12.6	0.0	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1861)
Ustilago_mating	PF05722.12	gi|408405410|ref|YP_006863393.1|	-	0.047	13.2	0.0	0.099	12.2	0.0	1.5	1	0	0	1	1	1	0	Ustilago	B	locus	mating-type	protein
Rhomboid	PF01694.22	gi|408405411|ref|YP_006863394.1|	-	2.2e-35	121.9	15.3	2.9e-35	121.5	15.3	1.1	1	0	0	1	1	1	1	Rhomboid	family
DUF1751	PF08551.10	gi|408405411|ref|YP_006863394.1|	-	0.021	15.4	0.7	0.036	14.6	0.0	1.8	2	0	0	2	2	2	0	Eukaryotic	integral	membrane	protein	(DUF1751)
zf-C2H2_4	PF13894.6	gi|408405412|ref|YP_006863395.1|	-	2.6e-05	24.7	2.0	3.5e-05	24.3	2.0	1.2	1	0	0	1	1	1	1	C2H2-type	zinc	finger
zf-H2C2_5	PF13909.6	gi|408405412|ref|YP_006863395.1|	-	0.00017	21.2	1.3	0.00025	20.7	1.3	1.3	1	0	0	1	1	1	1	C2H2-type	zinc-finger	domain
zf-C2H2	PF00096.26	gi|408405412|ref|YP_006863395.1|	-	0.0005	20.4	2.3	0.00067	20.0	2.3	1.2	1	0	0	1	1	1	1	Zinc	finger,	C2H2	type
DUF629	PF04780.12	gi|408405412|ref|YP_006863395.1|	-	0.00056	18.6	0.3	0.00058	18.5	0.3	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF629)
zf-BED	PF02892.15	gi|408405412|ref|YP_006863395.1|	-	0.0009	19.2	0.6	0.0011	19.0	0.6	1.2	1	0	0	1	1	1	1	BED	zinc	finger
zf-Di19	PF05605.12	gi|408405412|ref|YP_006863395.1|	-	0.0023	18.2	0.1	0.0029	17.9	0.1	1.1	1	0	0	1	1	1	1	Drought	induced	19	protein	(Di19),	zinc-binding
zf-H2C2_2	PF13465.6	gi|408405412|ref|YP_006863395.1|	-	0.0077	16.6	1.7	0.42	11.1	0.2	2.2	2	0	0	2	2	2	1	Zinc-finger	double	domain
Actin_micro	PF17003.5	gi|408405412|ref|YP_006863395.1|	-	0.0096	15.1	0.5	0.011	15.0	0.5	1.0	1	0	0	1	1	1	1	Putative	actin-like	family
zf-C2H2_jaz	PF12171.8	gi|408405412|ref|YP_006863395.1|	-	0.014	15.7	0.6	0.018	15.3	0.6	1.3	1	0	0	1	1	1	0	Zinc-finger	double-stranded	RNA-binding
zf-C2H2_2	PF12756.7	gi|408405412|ref|YP_006863395.1|	-	0.02	15.2	0.2	0.021	15.1	0.2	1.1	1	0	0	1	1	1	0	C2H2	type	zinc-finger	(2	copies)
zf-4CXXC_R1	PF10497.9	gi|408405412|ref|YP_006863395.1|	-	0.038	14.2	0.1	0.04	14.1	0.1	1.1	1	0	0	1	1	1	0	Zinc-finger	domain	of	monoamine-oxidase	A	repressor	R1
OrfB_Zn_ribbon	PF07282.11	gi|408405412|ref|YP_006863395.1|	-	0.081	12.9	0.4	0.11	12.4	0.3	1.3	1	1	0	1	1	1	0	Putative	transposase	DNA-binding	domain
Rad50_zn_hook	PF04423.14	gi|408405412|ref|YP_006863395.1|	-	0.087	12.7	0.2	0.11	12.3	0.2	1.2	1	0	0	1	1	1	0	Rad50	zinc	hook	motif
Cecropin	PF00272.19	gi|408405412|ref|YP_006863395.1|	-	0.091	12.5	0.4	0.12	12.1	0.4	1.2	1	0	0	1	1	1	0	Cecropin	family
MFS_1	PF07690.16	gi|408405413|ref|YP_006863396.1|	-	3e-22	79.0	37.6	3e-22	79.0	37.6	1.8	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
MFS_1_like	PF12832.7	gi|408405413|ref|YP_006863396.1|	-	8.9e-05	21.5	22.1	0.00028	19.9	22.1	1.7	1	1	0	1	1	1	1	MFS_1	like	family
CAAD	PF14159.6	gi|408405413|ref|YP_006863396.1|	-	0.16	11.8	3.7	0.48	10.3	0.1	2.9	2	0	0	2	2	2	0	CAAD	domains	of	cyanobacterial	aminoacyl-tRNA	synthetase
Methyltransf_9	PF08003.11	gi|408405413|ref|YP_006863396.1|	-	0.17	10.8	0.0	0.27	10.1	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1698)
MFS_2	PF13347.6	gi|408405413|ref|YP_006863396.1|	-	0.17	10.4	34.8	0.39	9.2	7.6	3.0	1	1	1	2	2	2	0	MFS/sugar	transport	protein
AsnC_trans_reg	PF01037.21	gi|408405414|ref|YP_006863397.1|	-	1.2e-12	47.6	0.2	1.2e-12	47.6	0.2	1.0	1	0	0	1	1	1	1	Lrp/AsnC	ligand	binding	domain
GYD	PF08734.11	gi|408405414|ref|YP_006863397.1|	-	0.037	14.0	0.0	0.037	14.0	0.0	1.2	1	0	0	1	1	1	0	GYD	domain
HTH_20	PF12840.7	gi|408405416|ref|YP_006863399.1|	-	5.5e-05	23.2	0.1	0.00011	22.2	0.1	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
MarR_2	PF12802.7	gi|408405416|ref|YP_006863399.1|	-	0.0087	15.9	0.1	0.69	9.8	0.0	2.4	2	0	0	2	2	2	1	MarR	family
DUF1724	PF08350.10	gi|408405416|ref|YP_006863399.1|	-	0.011	15.9	0.0	0.02	15.0	0.0	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1724)
HTH_45	PF14947.6	gi|408405416|ref|YP_006863399.1|	-	0.053	13.5	0.5	0.11	12.5	0.1	1.7	2	0	0	2	2	2	0	Winged	helix-turn-helix
DUF4423	PF14394.6	gi|408405416|ref|YP_006863399.1|	-	0.083	12.6	0.1	0.14	11.9	0.1	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4423)
V_ATPase_prox	PF18274.1	gi|408405417|ref|YP_006863400.1|	-	0.041	13.9	0.0	0.055	13.4	0.0	1.3	1	0	0	1	1	1	0	Vacuolar	ATPase	Subunit	I	N-terminal	proximal	lobe
Ribosomal_L11_N	PF03946.14	gi|408405418|ref|YP_006863401.1|	-	3.6e-21	74.8	0.6	7.8e-21	73.7	0.6	1.5	1	0	0	1	1	1	1	Ribosomal	protein	L11,	N-terminal	domain
Ribosomal_L11	PF00298.19	gi|408405418|ref|YP_006863401.1|	-	2.3e-19	69.7	0.7	4.3e-19	68.8	0.7	1.5	1	0	0	1	1	1	1	Ribosomal	protein	L11,	RNA	binding	domain
Qn_am_d_aIII	PF09099.10	gi|408405418|ref|YP_006863401.1|	-	0.0044	17.4	1.0	0.62	10.5	0.2	2.4	2	1	0	2	2	2	2	Quinohemoprotein	amine	dehydrogenase,	alpha	subunit	domain	III
RNaseH_like	PF04308.12	gi|408405418|ref|YP_006863401.1|	-	0.051	13.5	0.3	0.22	11.5	0.1	1.8	2	0	0	2	2	2	0	Ribonuclease	H-like
Peptidase_S8	PF00082.22	gi|408405419|ref|YP_006863402.1|	-	1.2e-31	110.2	0.1	2.2e-31	109.2	0.1	1.4	1	0	0	1	1	1	1	Subtilase	family
Big_3_3	PF13750.6	gi|408405419|ref|YP_006863402.1|	-	4.6e-10	39.4	0.4	0.017	14.8	0.1	3.8	3	0	0	3	3	3	3	Bacterial	Ig-like	domain	(group	3)
Big_3_2	PF12245.8	gi|408405419|ref|YP_006863402.1|	-	0.0023	18.2	0.0	3.9	7.7	0.0	3.0	2	0	0	2	2	2	2	Bacterial	Ig-like	domain
DUF4625	PF15418.6	gi|408405419|ref|YP_006863402.1|	-	0.0041	17.4	0.5	1.9	8.7	0.0	3.3	3	1	1	4	4	4	1	Domain	of	unknown	function	(DUF4625)
Big_7	PF17957.1	gi|408405419|ref|YP_006863402.1|	-	0.0089	16.8	1.0	7.9	7.3	0.0	3.9	3	0	0	3	3	3	1	Bacterial	Ig	domain
TcfC	PF16967.5	gi|408405419|ref|YP_006863402.1|	-	0.055	13.0	0.2	7.8	6.1	0.0	3.2	2	0	0	2	2	2	0	E-set	like	domain
Thioredoxin	PF00085.20	gi|408405420|ref|YP_006863403.1|	-	1.7e-27	95.4	0.0	2e-27	95.2	0.0	1.1	1	0	0	1	1	1	1	Thioredoxin
Thioredoxin_2	PF13098.6	gi|408405420|ref|YP_006863403.1|	-	1e-07	32.4	0.1	1.1e-06	29.1	0.1	2.0	1	1	0	1	1	1	1	Thioredoxin-like	domain
Redoxin	PF08534.10	gi|408405420|ref|YP_006863403.1|	-	4.6e-06	26.4	0.1	9.7e-06	25.4	0.1	1.5	1	1	1	2	2	2	1	Redoxin
Thioredoxin_8	PF13905.6	gi|408405420|ref|YP_006863403.1|	-	4.9e-06	26.8	0.1	0.0001	22.6	0.0	2.1	1	1	1	2	2	2	1	Thioredoxin-like
OST3_OST6	PF04756.13	gi|408405420|ref|YP_006863403.1|	-	6.9e-05	22.3	0.0	9.3e-05	21.9	0.0	1.2	1	0	0	1	1	1	1	OST3	/	OST6	family,	transporter	family
AhpC-TSA	PF00578.21	gi|408405420|ref|YP_006863403.1|	-	0.00023	21.1	0.1	0.00048	20.1	0.1	1.6	1	1	0	1	1	1	1	AhpC/TSA	family
Thioredoxin_7	PF13899.6	gi|408405420|ref|YP_006863403.1|	-	0.00038	20.6	0.3	0.00074	19.6	0.3	1.5	1	1	0	1	1	1	1	Thioredoxin-like
Thioredoxin_9	PF14595.6	gi|408405420|ref|YP_006863403.1|	-	0.00059	19.6	0.0	0.00064	19.5	0.0	1.1	1	0	0	1	1	1	1	Thioredoxin
Thioredoxin_3	PF13192.6	gi|408405420|ref|YP_006863403.1|	-	0.019	15.0	0.0	0.025	14.6	0.0	1.2	1	0	0	1	1	1	0	Thioredoxin	domain
T4_deiodinase	PF00837.17	gi|408405420|ref|YP_006863403.1|	-	0.033	13.5	0.0	0.035	13.4	0.0	1.1	1	0	0	1	1	1	0	Iodothyronine	deiodinase
GTP_EFTU_D4	PF14578.6	gi|408405421|ref|YP_006863404.1|	-	6.4e-27	93.3	0.9	2.2e-26	91.6	0.9	2.0	1	0	0	1	1	1	1	Elongation	factor	Tu	domain	4
GTP_EFTU	PF00009.27	gi|408405421|ref|YP_006863404.1|	-	1.4e-24	86.8	0.0	3.6e-24	85.4	0.0	1.7	1	0	0	1	1	1	1	Elongation	factor	Tu	GTP	binding	domain
IF-2	PF11987.8	gi|408405421|ref|YP_006863404.1|	-	5.5e-21	74.7	5.4	1.6e-20	73.1	1.2	2.3	2	0	0	2	2	2	1	Translation-initiation	factor	2
GTP_EFTU_D2	PF03144.25	gi|408405421|ref|YP_006863404.1|	-	0.00023	21.5	5.7	0.0013	19.1	0.0	3.0	3	0	0	3	3	3	1	Elongation	factor	Tu	domain	2
ATP_bind_1	PF03029.17	gi|408405421|ref|YP_006863404.1|	-	0.003	17.4	0.0	0.0059	16.4	0.0	1.4	1	0	0	1	1	1	1	Conserved	hypothetical	ATP	binding	protein
MMR_HSR1	PF01926.23	gi|408405421|ref|YP_006863404.1|	-	0.0042	17.2	0.4	0.021	14.9	0.0	2.3	2	1	0	2	2	2	1	50S	ribosome-binding	GTPase
Ras	PF00071.22	gi|408405421|ref|YP_006863404.1|	-	0.014	15.0	0.0	0.045	13.4	0.0	1.8	2	0	0	2	2	2	0	Ras	family
DUF3677	PF12432.8	gi|408405421|ref|YP_006863404.1|	-	0.13	12.6	0.3	3.5	8.0	0.1	2.5	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3677)
NDK	PF00334.19	gi|408405422|ref|YP_006863405.1|	-	7.3e-48	162.0	0.0	8.1e-48	161.9	0.0	1.0	1	0	0	1	1	1	1	Nucleoside	diphosphate	kinase
Ribosomal_L24e	PF01246.20	gi|408405423|ref|YP_006863406.1|	-	1.7e-16	60.2	1.3	2.1e-16	59.9	1.3	1.1	1	0	0	1	1	1	1	Ribosomal	protein	L24e
zf-FLZ	PF04570.14	gi|408405423|ref|YP_006863406.1|	-	0.0015	18.0	0.7	0.0029	17.1	0.7	1.6	1	1	0	1	1	1	1	zinc-finger	of	the	FCS-type,	C2-C2
DUF2175	PF09943.9	gi|408405423|ref|YP_006863406.1|	-	0.0085	16.4	0.2	0.0092	16.2	0.2	1.1	1	0	0	1	1	1	1	Uncharacterized	protein	conserved	in	archaea	(DUF2175)
zf-FCS	PF06467.14	gi|408405423|ref|YP_006863406.1|	-	0.01	15.7	3.6	0.016	15.1	3.6	1.4	1	0	0	1	1	1	0	MYM-type	Zinc	finger	with	FCS	sequence	motif
Cas_CXXC_CXXC	PF09706.10	gi|408405423|ref|YP_006863406.1|	-	0.05	13.8	0.3	0.06	13.6	0.3	1.2	1	0	0	1	1	1	0	CRISPR-associated	protein	(Cas_CXXC_CXXC)
DUF2116	PF09889.9	gi|408405423|ref|YP_006863406.1|	-	0.077	13.0	2.6	0.29	11.1	0.4	2.0	2	0	0	2	2	2	0	Uncharacterized	protein	containing	a	Zn-ribbon	(DUF2116)
Ribosomal_S28e	PF01200.18	gi|408405424|ref|YP_006863407.1|	-	1.5e-29	101.8	6.3	1.6e-29	101.6	6.3	1.0	1	0	0	1	1	1	1	Ribosomal	protein	S28e
Ribosomal_L7Ae	PF01248.26	gi|408405425|ref|YP_006863408.1|	-	2e-27	94.8	0.0	2.4e-27	94.5	0.0	1.1	1	0	0	1	1	1	1	Ribosomal	protein	L7Ae/L30e/S12e/Gadd45	family
PELOTA_1	PF15608.6	gi|408405425|ref|YP_006863408.1|	-	0.0014	18.5	0.1	0.0019	18.1	0.1	1.2	1	0	0	1	1	1	1	PELOTA	RNA	binding	domain
PGM_PMM_I	PF02878.16	gi|408405426|ref|YP_006863409.1|	-	2e-38	131.2	0.1	1.2e-37	128.6	0.0	2.1	2	0	0	2	2	2	1	Phosphoglucomutase/phosphomannomutase,	alpha/beta/alpha	domain	I
PGM_PMM_II	PF02879.16	gi|408405426|ref|YP_006863409.1|	-	7.3e-23	81.1	0.1	1.9e-22	79.8	0.1	1.7	1	0	0	1	1	1	1	Phosphoglucomutase/phosphomannomutase,	alpha/beta/alpha	domain	II
PGM_PMM_III	PF02880.16	gi|408405426|ref|YP_006863409.1|	-	1.5e-19	70.2	0.1	2.8e-19	69.4	0.1	1.4	1	0	0	1	1	1	1	Phosphoglucomutase/phosphomannomutase,	alpha/beta/alpha	domain	III
PGM_PMM_IV	PF00408.20	gi|408405426|ref|YP_006863409.1|	-	2.1e-09	37.4	0.0	4.8e-09	36.3	0.0	1.6	1	0	0	1	1	1	1	Phosphoglucomutase/phosphomannomutase,	C-terminal	domain
Phage_integrase	PF00589.22	gi|408405428|ref|YP_006863411.1|	-	1.4e-14	54.3	0.0	2.6e-14	53.4	0.0	1.5	1	0	0	1	1	1	1	Phage	integrase	family
zf-ribbon_3	PF13248.6	gi|408405428|ref|YP_006863411.1|	-	0.00099	18.4	2.2	0.0016	17.8	2.2	1.3	1	0	0	1	1	1	1	zinc-ribbon	domain
YhfH	PF14149.6	gi|408405428|ref|YP_006863411.1|	-	0.0058	16.6	5.2	0.16	12.0	0.3	2.4	1	1	1	2	2	2	2	YhfH-like	protein
DZR	PF12773.7	gi|408405428|ref|YP_006863411.1|	-	0.016	15.2	0.5	0.026	14.6	0.5	1.3	1	0	0	1	1	1	0	Double	zinc	ribbon
Ribosomal_L37e	PF01907.19	gi|408405428|ref|YP_006863411.1|	-	0.019	15.1	0.7	0.042	14.0	0.7	1.5	1	0	0	1	1	1	0	Ribosomal	protein	L37e
zinc_ribbon_2	PF13240.6	gi|408405428|ref|YP_006863411.1|	-	0.04	13.7	6.0	0.11	12.3	6.1	1.7	1	1	0	1	1	1	0	zinc-ribbon	domain
tRNA-synt_1g	PF09334.11	gi|408405428|ref|YP_006863411.1|	-	0.061	12.1	0.2	0.095	11.4	0.2	1.2	1	0	0	1	1	1	0	tRNA	synthetases	class	I	(M)
TF_Zn_Ribbon	PF08271.12	gi|408405428|ref|YP_006863411.1|	-	0.13	11.8	2.3	0.48	10.0	2.3	1.9	1	1	0	1	1	1	0	TFIIB	zinc-binding
UPF0547	PF10571.9	gi|408405428|ref|YP_006863411.1|	-	0.99	9.6	6.1	2.6	8.2	6.1	1.7	1	1	0	1	1	1	0	Uncharacterised	protein	family	UPF0547
zf-tcix	PF14952.6	gi|408405428|ref|YP_006863411.1|	-	7.8	6.2	10.3	2.9	7.6	1.3	2.3	1	1	1	2	2	2	0	Putative	treble-clef,	zinc-finger,	Zn-binding
zf_C2H2_6	PF18450.1	gi|408405429|ref|YP_006863412.1|	-	0.05	13.3	1.3	0.1	12.3	1.3	1.5	1	0	0	1	1	1	0	Zinc	Finger	domain
DUF5398	PF17376.2	gi|408405430|ref|YP_006863413.1|	-	0.014	16.0	0.1	0.016	15.8	0.1	1.1	1	0	0	1	1	1	0	Family	of	unknown	function	(DUF5398)
CcdA	PF07362.12	gi|408405430|ref|YP_006863413.1|	-	0.064	13.7	0.2	0.1	13.1	0.2	1.3	1	1	0	1	1	1	0	Post-segregation	antitoxin	CcdA
ParD_antitoxin	PF03693.14	gi|408405431|ref|YP_006863414.1|	-	0.0077	16.6	0.0	0.009	16.4	0.0	1.1	1	0	0	1	1	1	1	Bacterial	antitoxin	of	ParD	toxin-antitoxin	type	II	system	and	RHH
zf-CDGSH	PF09360.10	gi|408405432|ref|YP_006863415.1|	-	1.8e-11	44.1	0.4	1.8e-10	40.9	0.1	2.1	2	0	0	2	2	2	1	Iron-binding	zinc	finger	CDGSH	type
Kinocilin	PF15033.6	gi|408405433|ref|YP_006863416.1|	-	1.4	8.5	6.3	0.56	9.9	1.1	2.3	2	0	0	2	2	2	0	Kinocilin	protein
Bac_export_2	PF01312.19	gi|408405433|ref|YP_006863416.1|	-	2.4	7.3	5.2	3.1	6.9	5.2	1.1	1	0	0	1	1	1	0	FlhB	HrpN	YscU	SpaS	Family
Adeno_E3	PF06040.11	gi|408405433|ref|YP_006863416.1|	-	3.8	7.7	5.7	0.35	11.0	0.3	2.1	2	1	1	3	3	3	0	Adenovirus	E3	protein
DUF4179	PF13786.6	gi|408405434|ref|YP_006863417.1|	-	0.0072	16.8	1.6	0.0095	16.4	1.6	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4179)
Ost5	PF05251.12	gi|408405434|ref|YP_006863417.1|	-	0.015	15.6	0.7	0.026	14.8	0.3	1.6	1	1	1	2	2	2	0	Oligosaccharyltransferase	subunit	5
ETRAMP	PF09716.10	gi|408405434|ref|YP_006863417.1|	-	0.057	13.5	0.1	0.083	13.0	0.1	1.3	1	0	0	1	1	1	0	Malarial	early	transcribed	membrane	protein	(ETRAMP)
Lipoprotein_X	PF03305.13	gi|408405434|ref|YP_006863417.1|	-	0.068	12.9	0.1	0.084	12.6	0.1	1.2	1	0	0	1	1	1	0	Mycoplasma	MG185/MG260	protein
Glyco_hydro_19	PF00182.19	gi|408405434|ref|YP_006863417.1|	-	0.38	10.6	1.5	0.45	10.4	1.5	1.1	1	0	0	1	1	1	0	Chitinase	class	I
Arc_PepC_II	PF06847.11	gi|408405435|ref|YP_006863418.1|	-	4.1e-06	27.2	0.0	4.8e-06	27.0	0.0	1.2	1	0	0	1	1	1	1	Archaeal	Peptidase	A24	C-terminus	Type	II
Na_Ca_ex	PF01699.24	gi|408405438|ref|YP_006863421.1|	-	1.1e-30	106.6	42.6	6e-18	65.3	17.7	2.3	2	0	0	2	2	2	2	Sodium/calcium	exchanger	protein
SNO	PF01174.19	gi|408405441|ref|YP_006863424.1|	-	3.5e-48	164.0	0.2	4e-48	163.8	0.2	1.0	1	0	0	1	1	1	1	SNO	glutamine	amidotransferase	family
GATase_3	PF07685.14	gi|408405441|ref|YP_006863424.1|	-	1.2e-11	44.6	0.0	1.7e-11	44.1	0.0	1.2	1	0	0	1	1	1	1	CobB/CobQ-like	glutamine	amidotransferase	domain
GATase	PF00117.28	gi|408405441|ref|YP_006863424.1|	-	8.8e-10	38.7	0.0	2.1e-09	37.4	0.0	1.6	1	1	0	1	1	1	1	Glutamine	amidotransferase	class-I
Peptidase_C26	PF07722.13	gi|408405441|ref|YP_006863424.1|	-	6.1e-06	26.1	0.1	0.00023	21.0	0.1	2.4	1	1	0	1	1	1	1	Peptidase	C26
Peptidase_S51	PF03575.17	gi|408405441|ref|YP_006863424.1|	-	0.00051	19.8	0.0	0.0007	19.3	0.0	1.2	1	0	0	1	1	1	1	Peptidase	family	S51
DJ-1_PfpI	PF01965.24	gi|408405441|ref|YP_006863424.1|	-	0.0019	18.0	0.0	0.0033	17.3	0.0	1.4	1	0	0	1	1	1	1	DJ-1/PfpI	family
SOR_SNZ	PF01680.17	gi|408405442|ref|YP_006863425.1|	-	1.9e-98	328.3	4.7	2.6e-98	327.9	4.7	1.2	1	0	0	1	1	1	1	SOR/SNZ	family
ThiG	PF05690.14	gi|408405442|ref|YP_006863425.1|	-	3.5e-08	33.1	5.5	6.7e-07	28.9	0.2	2.4	2	0	0	2	2	2	2	Thiazole	biosynthesis	protein	ThiG
Dus	PF01207.17	gi|408405442|ref|YP_006863425.1|	-	9.8e-06	24.9	0.3	0.031	13.4	0.0	2.4	2	1	0	2	2	2	2	Dihydrouridine	synthase	(Dus)
His_biosynth	PF00977.21	gi|408405442|ref|YP_006863425.1|	-	1.1e-05	25.1	0.7	0.023	14.1	0.0	3.2	2	1	0	2	2	2	1	Histidine	biosynthesis	protein
IGPS	PF00218.21	gi|408405442|ref|YP_006863425.1|	-	0.0017	17.6	0.1	0.091	11.9	0.0	2.5	2	1	0	2	2	2	1	Indole-3-glycerol	phosphate	synthase
NanE	PF04131.14	gi|408405442|ref|YP_006863425.1|	-	0.0023	17.2	2.9	0.17	11.0	0.0	2.8	2	1	0	2	2	2	1	Putative	N-acetylmannosamine-6-phosphate	epimerase
NMO	PF03060.15	gi|408405442|ref|YP_006863425.1|	-	0.005	16.3	5.6	0.42	10.0	0.1	2.4	2	0	0	2	2	2	2	Nitronate	monooxygenase
TMP-TENI	PF02581.17	gi|408405442|ref|YP_006863425.1|	-	0.0054	16.1	0.5	0.38	10.1	0.0	2.4	2	0	0	2	2	2	1	Thiamine	monophosphate	synthase
FMN_dh	PF01070.18	gi|408405442|ref|YP_006863425.1|	-	0.033	13.2	1.7	0.31	10.0	0.0	2.4	2	1	0	2	2	2	0	FMN-dependent	dehydrogenase
TetR_C_27	PF17935.1	gi|408405442|ref|YP_006863425.1|	-	0.04	14.0	0.0	0.086	12.9	0.0	1.5	1	0	0	1	1	1	0	Tetracyclin	repressor-like,	C-terminal	domain
OMPdecase	PF00215.24	gi|408405442|ref|YP_006863425.1|	-	0.043	13.4	0.6	1.9	8.0	0.0	2.5	2	1	1	3	3	3	0	Orotidine	5'-phosphate	decarboxylase	/	HUMPS	family
Peptidase_S66C	PF17676.1	gi|408405442|ref|YP_006863425.1|	-	0.071	13.6	0.0	0.17	12.5	0.0	1.6	1	0	0	1	1	1	0	LD-carboxypeptidase	C-terminal	domain
SmpB	PF01668.18	gi|408405443|ref|YP_006863426.1|	-	0.019	14.9	0.0	0.023	14.5	0.0	1.1	1	0	0	1	1	1	0	SmpB	protein
Cas9_b_hairpin	PF17893.1	gi|408405443|ref|YP_006863426.1|	-	0.069	13.0	0.0	0.11	12.4	0.0	1.4	1	0	0	1	1	1	0	CRISPR-associated	endonuclease	Cas9	beta-hairpin	domain
CopK	PF11525.8	gi|408405443|ref|YP_006863426.1|	-	0.075	12.7	0.0	0.17	11.5	0.0	1.6	1	1	0	1	1	1	0	Copper	resistance	protein	K
Aconitase	PF00330.20	gi|408405444|ref|YP_006863427.1|	-	1.7e-115	386.7	0.6	1.1e-113	380.7	0.6	2.2	1	1	0	1	1	1	1	Aconitase	family	(aconitate	hydratase)
Aconitase_C	PF00694.19	gi|408405444|ref|YP_006863427.1|	-	1.4e-22	80.5	0.1	3.9e-22	79.0	0.1	1.7	1	0	0	1	1	1	1	Aconitase	C-terminal	domain
DUF521	PF04412.13	gi|408405444|ref|YP_006863427.1|	-	0.00035	19.4	0.0	0.00053	18.8	0.0	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF521)
Zn-ribbon_8	PF09723.10	gi|408405445|ref|YP_006863428.1|	-	0.0012	18.9	1.0	0.0012	18.9	1.0	1.5	2	0	0	2	2	2	1	Zinc	ribbon	domain
OrfB_Zn_ribbon	PF07282.11	gi|408405445|ref|YP_006863428.1|	-	0.0013	18.7	0.5	0.061	13.3	0.1	2.2	2	0	0	2	2	2	1	Putative	transposase	DNA-binding	domain
zf-TFIIB	PF13453.6	gi|408405445|ref|YP_006863428.1|	-	0.0027	17.0	1.2	0.27	10.6	0.1	2.5	3	0	0	3	3	3	2	Transcription	factor	zinc-finger
zinc_ribbon_2	PF13240.6	gi|408405445|ref|YP_006863428.1|	-	0.0085	15.8	0.3	0.023	14.4	0.1	1.9	2	0	0	2	2	2	1	zinc-ribbon	domain
zf-ribbon_3	PF13248.6	gi|408405445|ref|YP_006863428.1|	-	0.0095	15.3	0.4	0.031	13.7	0.1	1.9	2	0	0	2	2	2	1	zinc-ribbon	domain
DZR	PF12773.7	gi|408405445|ref|YP_006863428.1|	-	0.01	15.9	0.1	0.017	15.1	0.1	1.4	1	0	0	1	1	1	0	Double	zinc	ribbon
HypA	PF01155.19	gi|408405445|ref|YP_006863428.1|	-	0.025	14.6	0.1	0.03	14.4	0.1	1.2	1	0	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
DUF1922	PF09082.10	gi|408405445|ref|YP_006863428.1|	-	0.088	13.1	0.0	0.15	12.4	0.0	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1922)
zf_UBZ	PF18439.1	gi|408405445|ref|YP_006863428.1|	-	0.098	12.3	1.7	0.14	11.7	0.4	1.9	2	0	0	2	2	2	0	Ubiquitin-Binding	Zinc	Finger
Mu-like_Com	PF10122.9	gi|408405445|ref|YP_006863428.1|	-	0.22	11.0	3.6	0.42	10.1	1.2	2.1	1	1	1	2	2	2	0	Mu-like	prophage	protein	Com
zf-ACC	PF17848.1	gi|408405445|ref|YP_006863428.1|	-	9.9	6.3	7.7	1.2	9.2	0.4	2.8	3	0	0	3	3	3	0	Acetyl-coA	carboxylase	zinc	finger	domain
Spherulin4	PF12138.8	gi|408405446|ref|YP_006863429.1|	-	1.7e-13	50.8	2.0	2.8e-13	50.1	2.0	1.2	1	0	0	1	1	1	1	Spherulation-specific	family	4
PEGA	PF08308.11	gi|408405446|ref|YP_006863429.1|	-	0.052	13.4	0.0	6.3	6.8	0.0	2.5	2	0	0	2	2	2	0	PEGA	domain
GDPD	PF03009.17	gi|408405446|ref|YP_006863429.1|	-	0.065	13.0	0.1	0.15	11.7	0.0	1.7	2	0	0	2	2	2	0	Glycerophosphoryl	diester	phosphodiesterase	family
TFIIB	PF00382.19	gi|408405447|ref|YP_006863430.1|	-	3.4e-24	84.7	4.1	1.2e-13	50.8	0.1	2.2	2	0	0	2	2	2	2	Transcription	factor	TFIIB	repeat
TF_Zn_Ribbon	PF08271.12	gi|408405447|ref|YP_006863430.1|	-	4e-09	35.8	1.1	7.5e-09	35.0	1.1	1.5	1	0	0	1	1	1	1	TFIIB	zinc-binding
Cyclin_N	PF00134.23	gi|408405447|ref|YP_006863430.1|	-	0.0032	17.2	1.0	0.05	13.3	0.1	2.2	2	0	0	2	2	2	1	Cyclin,	N-terminal	domain
C1_2	PF03107.16	gi|408405447|ref|YP_006863430.1|	-	0.0086	16.4	0.2	0.019	15.3	0.2	1.6	1	0	0	1	1	1	1	C1	domain
DZR	PF12773.7	gi|408405447|ref|YP_006863430.1|	-	0.011	15.7	0.5	0.029	14.4	0.5	1.7	1	0	0	1	1	1	0	Double	zinc	ribbon
Cyclin_C	PF02984.19	gi|408405447|ref|YP_006863430.1|	-	0.02	15.0	0.2	0.17	12.0	0.2	2.1	1	1	1	2	2	2	0	Cyclin,	C-terminal	domain
zf-ribbon_3	PF13248.6	gi|408405447|ref|YP_006863430.1|	-	0.056	12.9	3.9	0.56	9.7	4.1	2.4	1	1	1	2	2	2	0	zinc-ribbon	domain
HTH_29	PF13551.6	gi|408405447|ref|YP_006863430.1|	-	0.13	12.3	0.1	1.6	8.8	0.0	2.4	2	0	0	2	2	2	0	Winged	helix-turn	helix
Arcadin_1	PF18653.1	gi|408405447|ref|YP_006863430.1|	-	0.16	12.1	0.0	0.35	10.9	0.0	1.6	1	1	0	1	1	1	0	Arcadin	1
Auto_anti-p27	PF06677.12	gi|408405447|ref|YP_006863430.1|	-	0.16	12.1	0.9	0.39	10.9	0.9	1.6	1	0	0	1	1	1	0	Sjogren's	syndrome/scleroderma	autoantigen	1	(Autoantigen	p27)
SIS	PF01380.22	gi|408405448|ref|YP_006863431.1|	-	3.3e-50	169.3	2.5	9.5e-26	90.2	1.8	2.3	2	0	0	2	2	2	2	SIS	domain
GATase_6	PF13522.6	gi|408405448|ref|YP_006863431.1|	-	2.4e-19	69.9	0.0	5.4e-19	68.7	0.0	1.6	1	0	0	1	1	1	1	Glutamine	amidotransferase	domain
GATase_7	PF13537.6	gi|408405448|ref|YP_006863431.1|	-	5e-16	58.7	0.0	1.2e-15	57.5	0.0	1.6	1	0	0	1	1	1	1	Glutamine	amidotransferase	domain
GATase_4	PF13230.6	gi|408405448|ref|YP_006863431.1|	-	0.0026	16.7	0.0	0.0043	16.0	0.0	1.2	1	0	0	1	1	1	1	Glutamine	amidotransferases	class-II
SIS_2	PF13580.6	gi|408405448|ref|YP_006863431.1|	-	0.01	15.8	2.9	0.22	11.5	0.3	3.3	2	1	0	3	3	3	0	SIS	domain
POR_N	PF01855.19	gi|408405449|ref|YP_006863432.1|	-	4.9e-62	209.7	0.0	7.1e-62	209.2	0.0	1.2	1	0	0	1	1	1	1	Pyruvate	flavodoxin/ferredoxin	oxidoreductase,	thiamine	diP-bdg
POR	PF01558.18	gi|408405449|ref|YP_006863432.1|	-	1.8e-35	122.6	0.1	3.1e-35	121.8	0.1	1.3	1	0	0	1	1	1	1	Pyruvate	ferredoxin/flavodoxin	oxidoreductase
PFOR_II	PF17147.4	gi|408405449|ref|YP_006863432.1|	-	9e-11	42.0	0.2	2.7e-10	40.5	0.0	2.0	2	0	0	2	2	2	1	Pyruvate:ferredoxin	oxidoreductase	core	domain	II
Transketolase_C	PF02780.20	gi|408405449|ref|YP_006863432.1|	-	7.8e-06	25.8	0.1	2.9e-05	23.9	0.0	2.0	2	0	0	2	2	2	1	Transketolase,	C-terminal	domain
TPP_enzyme_N	PF02776.18	gi|408405449|ref|YP_006863432.1|	-	0.0024	17.5	0.0	0.008	15.8	0.0	1.9	1	0	0	1	1	1	1	Thiamine	pyrophosphate	enzyme,	N-terminal	TPP	binding	domain
Dicty_REP	PF05086.12	gi|408405449|ref|YP_006863432.1|	-	0.16	10.0	0.0	0.21	9.5	0.0	1.1	1	0	0	1	1	1	0	Dictyostelium	(Slime	Mold)	REP	protein
TPP_enzyme_C	PF02775.21	gi|408405450|ref|YP_006863433.1|	-	2e-31	108.8	0.1	3.6e-31	108.0	0.1	1.4	1	0	0	1	1	1	1	Thiamine	pyrophosphate	enzyme,	C-terminal	TPP	binding	domain
PFO_beta_C	PF12367.8	gi|408405450|ref|YP_006863433.1|	-	3.1e-18	65.7	1.5	2e-16	59.9	1.5	2.5	1	1	0	1	1	1	1	Pyruvate	ferredoxin	oxidoreductase	beta	subunit	C	terminal
AsnC_trans_reg	PF01037.21	gi|408405453|ref|YP_006863436.1|	-	6.9e-13	48.4	0.3	7.5e-13	48.2	0.3	1.0	1	0	0	1	1	1	1	Lrp/AsnC	ligand	binding	domain
ACT_5	PF13710.6	gi|408405453|ref|YP_006863436.1|	-	0.028	14.3	0.1	5.4	6.9	0.0	2.2	2	0	0	2	2	2	0	ACT	domain
EF1_GNE	PF00736.19	gi|408405453|ref|YP_006863436.1|	-	0.05	13.8	0.5	0.084	13.1	0.5	1.4	1	1	0	1	1	1	0	EF-1	guanine	nucleotide	exchange	domain
HTH_OrfB_IS605	PF12323.8	gi|408405454|ref|YP_006863437.1|	-	3.4e-13	48.9	0.0	9.5e-13	47.4	0.0	1.7	1	0	0	1	1	1	1	Helix-turn-helix	domain
OrfB_IS605	PF01385.19	gi|408405455|ref|YP_006863438.1|	-	2.9e-17	63.0	3.7	5.1e-17	62.2	3.2	1.7	1	1	1	2	2	2	1	Probable	transposase
DUF3490	PF11995.8	gi|408405455|ref|YP_006863438.1|	-	0.003	17.4	2.2	0.0046	16.8	2.2	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF3490)
DUF4428	PF14471.6	gi|408405456|ref|YP_006863439.1|	-	0.0029	17.5	1.1	0.0082	16.0	1.1	1.7	1	1	0	1	1	1	1	Domain	of	unknown	function	(DUF4428)
zinc_ribbon_10	PF10058.9	gi|408405457|ref|YP_006863440.1|	-	0.0085	15.8	2.5	0.47	10.2	0.1	2.1	1	1	1	2	2	2	2	Predicted	integral	membrane	zinc-ribbon	metal-binding	protein
zf-trcl	PF13451.6	gi|408405457|ref|YP_006863440.1|	-	0.022	14.6	0.4	1.6	8.7	0.1	2.1	2	0	0	2	2	2	0	Probable	zinc-ribbon	domain
zf-C2HC_2	PF13913.6	gi|408405457|ref|YP_006863440.1|	-	0.057	13.3	0.2	0.057	13.3	0.2	2.1	2	0	0	2	2	2	0	zinc-finger	of	a	C2HC-type
zinc_ribbon_9	PF14369.6	gi|408405457|ref|YP_006863440.1|	-	0.069	13.4	0.1	8.9	6.7	0.1	2.1	2	0	0	2	2	2	0	zinc-ribbon
Cys_rich_KTR	PF14205.6	gi|408405457|ref|YP_006863440.1|	-	0.15	11.8	1.4	1.8	8.4	1.3	2.0	1	1	0	1	1	1	0	Cysteine-rich	KTR
Cupredoxin_1	PF13473.6	gi|408405458|ref|YP_006863441.1|	-	0.0011	19.1	0.0	0.0014	18.8	0.0	1.2	1	0	0	1	1	1	1	Cupredoxin-like	domain
Copper-bind	PF00127.20	gi|408405458|ref|YP_006863441.1|	-	0.0024	18.3	0.0	0.004	17.6	0.0	1.4	1	0	0	1	1	1	1	Copper	binding	proteins,	plastocyanin/azurin	family
TFIIB_C_1	PF18542.1	gi|408405459|ref|YP_006863442.1|	-	0.085	12.9	0.3	0.1	12.7	0.3	1.2	1	0	0	1	1	1	0	Transcription	factor	IIB	C-terminal	module	1
HTH_45	PF14947.6	gi|408405460|ref|YP_006863443.1|	-	1.3e-20	73.2	1.1	1.4e-20	73.0	1.1	1.0	1	0	0	1	1	1	1	Winged	helix-turn-helix
DUF4364	PF14277.6	gi|408405460|ref|YP_006863443.1|	-	9.5e-05	22.2	0.2	0.00012	21.8	0.2	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4364)
HTH_27	PF13463.6	gi|408405460|ref|YP_006863443.1|	-	0.0024	18.4	0.1	0.0032	17.9	0.1	1.2	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
HxlR	PF01638.17	gi|408405460|ref|YP_006863443.1|	-	0.053	13.4	0.0	0.06	13.2	0.0	1.3	1	0	0	1	1	1	0	HxlR-like	helix-turn-helix
FaeA	PF04703.12	gi|408405460|ref|YP_006863443.1|	-	0.062	13.7	0.1	0.094	13.1	0.1	1.3	1	0	0	1	1	1	0	FaeA-like	protein
DUF2250	PF10007.9	gi|408405460|ref|YP_006863443.1|	-	0.082	13.0	0.1	0.095	12.8	0.1	1.2	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
HATPase_c	PF02518.26	gi|408405462|ref|YP_006863445.1|	-	6.5e-30	103.9	0.4	2.3e-29	102.2	0.1	2.0	2	0	0	2	2	2	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HisKA	PF00512.25	gi|408405462|ref|YP_006863445.1|	-	1.1e-11	44.5	0.5	1.1e-11	44.5	0.5	1.9	2	0	0	2	2	2	1	His	Kinase	A	(phospho-acceptor)	domain
HATPase_c_2	PF13581.6	gi|408405462|ref|YP_006863445.1|	-	9.5e-06	25.6	0.0	2.7e-05	24.1	0.0	1.7	1	0	0	1	1	1	1	Histidine	kinase-like	ATPase	domain
PLDc_2	PF13091.6	gi|408405462|ref|YP_006863445.1|	-	0.00015	21.7	0.2	0.00034	20.5	0.1	1.7	2	0	0	2	2	2	1	PLD-like	domain
HATPase_c_3	PF13589.6	gi|408405462|ref|YP_006863445.1|	-	0.00094	19.0	0.0	0.0023	17.8	0.0	1.6	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
Regulator_TrmB	PF11495.8	gi|408405462|ref|YP_006863445.1|	-	0.0015	17.8	0.6	0.0035	16.6	0.6	1.6	1	0	0	1	1	1	1	Archaeal	transcriptional	regulator	TrmB
HATPase_c_5	PF14501.6	gi|408405462|ref|YP_006863445.1|	-	0.0015	18.4	0.0	0.0045	16.9	0.0	1.8	2	0	0	2	2	2	1	GHKL	domain
TSP_C	PF05735.12	gi|408405462|ref|YP_006863445.1|	-	0.011	15.7	0.1	1.4	8.8	0.0	2.2	1	1	1	2	2	2	0	Thrombospondin	C-terminal	region
RAB3GAP2_N	PF14655.6	gi|408405462|ref|YP_006863445.1|	-	0.04	13.2	0.0	0.079	12.2	0.0	1.6	1	1	0	1	1	1	0	Rab3	GTPase-activating	protein	regulatory	subunit	N-terminus
Copper-bind	PF00127.20	gi|408405463|ref|YP_006863446.1|	-	1.9e-10	41.0	0.0	3.5e-10	40.2	0.0	1.4	1	0	0	1	1	1	1	Copper	binding	proteins,	plastocyanin/azurin	family
UTRA	PF07702.13	gi|408405467|ref|YP_006863450.1|	-	0.0097	15.8	0.0	0.011	15.6	0.0	1.1	1	0	0	1	1	1	1	UTRA	domain
RNA_pol_L_2	PF13656.6	gi|408405467|ref|YP_006863450.1|	-	0.029	14.1	0.0	0.35	10.7	0.0	2.0	1	1	1	2	2	2	0	RNA	polymerase	Rpb3/Rpb11	dimerisation	domain
HobA	PF12163.8	gi|408405467|ref|YP_006863450.1|	-	0.057	13.0	0.0	0.06	12.9	0.0	1.1	1	0	0	1	1	1	0	DNA	replication	regulator
Response_reg	PF00072.24	gi|408405468|ref|YP_006863451.1|	-	5.8e-16	58.7	0.0	6.6e-16	58.5	0.0	1.1	1	0	0	1	1	1	1	Response	regulator	receiver	domain
DUF4149	PF13664.6	gi|408405469|ref|YP_006863452.1|	-	5.6	7.3	14.0	1.1	9.6	3.2	3.3	3	1	0	3	3	3	0	Domain	of	unknown	function	(DUF4149)
ABC_tran	PF00005.27	gi|408405470|ref|YP_006863453.1|	-	2.5e-23	83.1	0.0	4.3e-23	82.3	0.0	1.4	1	0	0	1	1	1	1	ABC	transporter
SMC_N	PF02463.19	gi|408405470|ref|YP_006863453.1|	-	1e-10	41.4	0.7	0.00024	20.6	0.0	2.1	2	0	0	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
AAA_21	PF13304.6	gi|408405470|ref|YP_006863453.1|	-	2.2e-10	40.8	0.2	0.00028	20.8	0.0	2.2	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_29	PF13555.6	gi|408405470|ref|YP_006863453.1|	-	8.6e-05	22.2	0.0	0.00019	21.1	0.0	1.6	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
RsgA_GTPase	PF03193.16	gi|408405470|ref|YP_006863453.1|	-	0.00016	21.6	0.1	0.00047	20.1	0.1	1.8	2	0	0	2	2	1	1	RsgA	GTPase
AAA_15	PF13175.6	gi|408405470|ref|YP_006863453.1|	-	0.0003	20.6	0.0	0.027	14.2	0.0	2.1	1	1	0	2	2	2	1	AAA	ATPase	domain
AAA_13	PF13166.6	gi|408405470|ref|YP_006863453.1|	-	0.00033	19.5	0.0	0.37	9.4	0.0	2.1	2	0	0	2	2	2	2	AAA	domain
AAA_23	PF13476.6	gi|408405470|ref|YP_006863453.1|	-	0.00036	21.1	0.3	0.00071	20.1	0.1	1.5	2	0	0	2	2	2	1	AAA	domain
AAA_27	PF13514.6	gi|408405470|ref|YP_006863453.1|	-	0.0019	17.8	0.1	0.0041	16.7	0.1	1.5	1	0	0	1	1	1	1	AAA	domain
AAA_25	PF13481.6	gi|408405470|ref|YP_006863453.1|	-	0.0047	16.5	0.1	0.12	11.9	0.0	2.2	2	0	0	2	2	2	1	AAA	domain
ATPase_2	PF01637.18	gi|408405470|ref|YP_006863453.1|	-	0.0082	16.1	0.6	0.47	10.3	0.0	2.2	2	1	0	2	2	2	1	ATPase	domain	predominantly	from	Archaea
AAA_18	PF13238.6	gi|408405470|ref|YP_006863453.1|	-	0.0086	16.6	0.2	0.14	12.7	0.1	2.4	1	1	0	1	1	1	1	AAA	domain
AAA_33	PF13671.6	gi|408405470|ref|YP_006863453.1|	-	0.0088	16.2	0.0	0.014	15.6	0.0	1.4	1	0	0	1	1	1	1	AAA	domain
Dynamin_N	PF00350.23	gi|408405470|ref|YP_006863453.1|	-	0.011	15.7	0.1	0.027	14.5	0.1	1.8	1	1	0	1	1	1	0	Dynamin	family
MMR_HSR1	PF01926.23	gi|408405470|ref|YP_006863453.1|	-	0.014	15.5	0.4	0.041	14.0	0.1	1.9	2	1	0	2	2	2	0	50S	ribosome-binding	GTPase
AAA_22	PF13401.6	gi|408405470|ref|YP_006863453.1|	-	0.018	15.3	0.1	0.14	12.4	0.1	2.3	1	1	0	1	1	1	0	AAA	domain
DUF87	PF01935.17	gi|408405470|ref|YP_006863453.1|	-	0.029	14.5	0.1	6.9	6.7	0.0	2.1	2	0	0	2	2	2	0	Helicase	HerA,	central	domain
AAA	PF00004.29	gi|408405470|ref|YP_006863453.1|	-	0.04	14.4	0.2	0.21	12.0	0.2	2.1	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
ABC_ATPase	PF09818.9	gi|408405470|ref|YP_006863453.1|	-	0.047	12.5	0.1	0.08	11.7	0.1	1.3	1	0	0	1	1	1	0	Predicted	ATPase	of	the	ABC	class
T2SSE	PF00437.20	gi|408405470|ref|YP_006863453.1|	-	0.054	12.6	0.0	0.1	11.6	0.0	1.4	1	0	0	1	1	1	0	Type	II/IV	secretion	system	protein
AAA_16	PF13191.6	gi|408405470|ref|YP_006863453.1|	-	0.057	13.8	0.0	0.084	13.2	0.0	1.5	1	1	0	1	1	1	0	AAA	ATPase	domain
AAA_24	PF13479.6	gi|408405470|ref|YP_006863453.1|	-	0.077	12.7	0.1	0.31	10.7	0.0	2.0	2	0	0	2	2	2	0	AAA	domain
AIG1	PF04548.16	gi|408405470|ref|YP_006863453.1|	-	0.089	12.1	0.0	0.23	10.7	0.0	1.6	1	0	0	1	1	1	0	AIG1	family
IstB_IS21	PF01695.17	gi|408405470|ref|YP_006863453.1|	-	0.099	12.4	0.2	0.28	10.9	0.0	1.8	2	0	0	2	2	2	0	IstB-like	ATP	binding	protein
NB-ARC	PF00931.22	gi|408405470|ref|YP_006863453.1|	-	0.1	11.7	0.1	0.2	10.8	0.1	1.4	1	0	0	1	1	1	0	NB-ARC	domain
AAA_17	PF13207.6	gi|408405470|ref|YP_006863453.1|	-	0.12	12.8	0.1	0.53	10.7	0.0	2.0	2	0	0	2	2	2	0	AAA	domain
AAA_14	PF13173.6	gi|408405470|ref|YP_006863453.1|	-	0.13	12.2	0.0	0.47	10.5	0.0	2.2	1	1	0	1	1	1	0	AAA	domain
Pox_Rap94	PF03294.14	gi|408405470|ref|YP_006863453.1|	-	0.18	9.9	0.3	0.28	9.2	0.0	1.3	2	0	0	2	2	2	0	RNA	polymerase-associated	transcription	specificity	factor,	Rap94
AAA_28	PF13521.6	gi|408405470|ref|YP_006863453.1|	-	0.18	12.0	0.0	0.49	10.6	0.0	1.8	1	0	0	1	1	1	0	AAA	domain
Chlor_dismutase	PF06778.12	gi|408405472|ref|YP_006863455.1|	-	4.9e-62	209.0	1.6	5.8e-62	208.7	1.6	1.0	1	0	0	1	1	1	1	Chlorite	dismutase
DUF1802	PF08819.11	gi|408405473|ref|YP_006863456.1|	-	2.4e-61	206.6	0.1	2.6e-61	206.5	0.1	1.0	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1802)
Aldo_ket_red	PF00248.21	gi|408405474|ref|YP_006863457.1|	-	2.2e-53	181.4	0.1	2.5e-53	181.2	0.1	1.0	1	0	0	1	1	1	1	Aldo/keto	reductase	family
Hemerythrin	PF01814.23	gi|408405475|ref|YP_006863458.1|	-	6.7e-10	39.7	2.3	6.7e-10	39.7	2.3	1.9	1	1	1	2	2	2	2	Hemerythrin	HHE	cation	binding	domain
HrpB7	PF09486.10	gi|408405475|ref|YP_006863458.1|	-	0.0058	17.0	0.7	0.066	13.6	0.1	2.1	2	0	0	2	2	2	1	Bacterial	type	III	secretion	protein	(HrpB7)
AsnC_trans_reg2	PF17805.1	gi|408405476|ref|YP_006863459.1|	-	3e-55	184.3	0.0	6.7e-29	99.9	0.0	2.8	3	0	0	3	3	2	2	AsnC-like	ligand	binding	domain
HTH_AsnC-type	PF13404.6	gi|408405476|ref|YP_006863459.1|	-	3.1e-10	39.7	0.0	5.1e-07	29.4	0.0	2.7	2	0	0	2	2	2	2	AsnC-type	helix-turn-helix	domain
HTH_24	PF13412.6	gi|408405476|ref|YP_006863459.1|	-	1.3e-06	27.9	1.3	3.9e-05	23.1	1.7	3.0	2	1	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
AsnC_trans_reg	PF01037.21	gi|408405476|ref|YP_006863459.1|	-	4.1e-06	26.7	0.0	0.096	12.7	0.0	3.2	2	1	0	2	2	2	2	Lrp/AsnC	ligand	binding	domain
Sigma70_r4	PF04545.16	gi|408405476|ref|YP_006863459.1|	-	0.00071	19.0	0.1	0.34	10.5	0.0	2.9	2	0	0	2	2	2	2	Sigma-70,	region	4
HTH_11	PF08279.12	gi|408405476|ref|YP_006863459.1|	-	0.0057	16.6	0.2	0.011	15.6	0.2	1.5	1	0	0	1	1	1	1	HTH	domain
NapD	PF03927.13	gi|408405476|ref|YP_006863459.1|	-	0.015	15.3	0.0	0.092	12.8	0.0	2.3	3	0	0	3	3	3	0	NapD	protein
HTH_20	PF12840.7	gi|408405476|ref|YP_006863459.1|	-	0.018	15.1	0.0	0.044	13.8	0.0	1.6	1	0	0	1	1	1	0	Helix-turn-helix	domain
DUF2250	PF10007.9	gi|408405476|ref|YP_006863459.1|	-	0.045	13.9	0.0	0.56	10.3	0.0	2.5	2	1	0	2	2	2	0	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
HTH_36	PF13730.6	gi|408405476|ref|YP_006863459.1|	-	0.14	12.1	0.0	0.27	11.2	0.0	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_Crp_2	PF13545.6	gi|408405476|ref|YP_006863459.1|	-	0.15	12.0	0.0	0.37	10.8	0.0	1.6	1	0	0	1	1	1	0	Crp-like	helix-turn-helix	domain
MarR_2	PF12802.7	gi|408405476|ref|YP_006863459.1|	-	0.18	11.7	0.0	0.43	10.5	0.0	1.6	1	0	0	1	1	1	0	MarR	family
B12D	PF06522.11	gi|408405477|ref|YP_006863460.1|	-	0.51	10.2	1.9	0.98	9.3	0.6	1.9	1	1	1	2	2	2	0	NADH-ubiquinone	reductase	complex	1	MLRQ	subunit
DUF969	PF06149.12	gi|408405478|ref|YP_006863461.1|	-	0.097	12.1	0.4	0.11	11.9	0.4	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF969)
S_4TM	PF18159.1	gi|408405478|ref|YP_006863461.1|	-	0.14	11.4	0.1	0.15	11.3	0.1	1.0	1	0	0	1	1	1	0	SMODS-associating	4TM	effector	domain
DZR	PF12773.7	gi|408405479|ref|YP_006863462.1|	-	0.0017	18.3	8.8	0.0072	16.3	9.1	1.8	1	1	1	2	2	2	2	Double	zinc	ribbon
zinc_ribbon_9	PF14369.6	gi|408405479|ref|YP_006863462.1|	-	0.16	12.2	0.0	0.16	12.2	0.0	3.4	3	1	0	3	3	3	0	zinc-ribbon
Ribosomal_L37e	PF01907.19	gi|408405479|ref|YP_006863462.1|	-	0.34	11.1	15.5	0.16	12.1	1.3	2.3	1	1	1	2	2	2	0	Ribosomal	protein	L37e
HypA	PF01155.19	gi|408405479|ref|YP_006863462.1|	-	0.41	10.7	7.9	4.7	7.3	6.1	2.1	1	1	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
RNHCP	PF12647.7	gi|408405479|ref|YP_006863462.1|	-	0.5	10.4	6.9	0.93	9.5	4.5	2.1	2	1	0	2	2	2	0	RNHCP	domain
DUF2797	PF10977.8	gi|408405479|ref|YP_006863462.1|	-	0.77	9.6	10.6	0.17	11.7	3.0	2.0	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF2797)
DUF2321	PF10083.9	gi|408405479|ref|YP_006863462.1|	-	1.7	8.3	7.7	0.14	11.8	3.2	1.4	1	1	0	1	1	1	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2321)
zf-C2H2_4	PF13894.6	gi|408405479|ref|YP_006863462.1|	-	2.6	9.1	0.1	2.6	9.1	0.1	3.7	4	0	0	4	4	4	0	C2H2-type	zinc	finger
zf-ribbon_3	PF13248.6	gi|408405479|ref|YP_006863462.1|	-	3.4	7.2	17.3	6.4	6.3	4.1	3.3	2	2	0	2	2	2	0	zinc-ribbon	domain
Response_reg	PF00072.24	gi|408405480|ref|YP_006863463.1|	-	4.7e-22	78.3	0.2	5.7e-22	78.0	0.2	1.1	1	0	0	1	1	1	1	Response	regulator	receiver	domain
MEDS	PF14417.6	gi|408405481|ref|YP_006863464.1|	-	2.1e-12	47.2	0.2	2.5e-12	46.9	0.2	1.1	1	0	0	1	1	1	1	MEDS:	MEthanogen/methylotroph,	DcmR	Sensory	domain
ATPase	PF06745.13	gi|408405481|ref|YP_006863464.1|	-	0.0037	16.6	0.0	0.0044	16.4	0.0	1.1	1	0	0	1	1	1	1	KaiC
T3SS_HrpK1	PF16937.5	gi|408405481|ref|YP_006863464.1|	-	0.031	13.9	0.0	0.039	13.6	0.0	1.1	1	0	0	1	1	1	0	Type	III	secretion	system	translocator	protein,	HrpF
ROS_MUCR	PF05443.11	gi|408405481|ref|YP_006863464.1|	-	0.13	12.3	0.0	11	6.0	0.0	2.1	2	0	0	2	2	2	0	ROS/MUCR	transcriptional	regulator	protein
Response_reg	PF00072.24	gi|408405482|ref|YP_006863465.1|	-	1.5e-11	44.4	0.1	1.7e-11	44.3	0.1	1.0	1	0	0	1	1	1	1	Response	regulator	receiver	domain
TraB	PF01963.17	gi|408405482|ref|YP_006863465.1|	-	0.1	12.5	0.0	0.13	12.1	0.0	1.1	1	0	0	1	1	1	0	TraB	family
Cpn60_TCP1	PF00118.24	gi|408405483|ref|YP_006863466.1|	-	1e-176	588.4	17.0	1.2e-176	588.2	17.0	1.0	1	0	0	1	1	1	1	TCP-1/cpn60	chaperonin	family
Ph1570	PF09638.10	gi|408405483|ref|YP_006863466.1|	-	0.2	11.5	1.0	0.51	10.2	0.2	2.0	2	0	0	2	2	2	0	Ph1570	protein
HTH_20	PF12840.7	gi|408405484|ref|YP_006863467.1|	-	1.1e-14	54.3	0.1	1e-11	44.7	0.0	2.6	2	1	0	2	2	2	2	Helix-turn-helix	domain
HTH_5	PF01022.20	gi|408405484|ref|YP_006863467.1|	-	1.4e-12	47.3	0.3	1.5e-10	40.8	0.0	2.6	2	0	0	2	2	2	1	Bacterial	regulatory	protein,	arsR	family
DprA_WH	PF17782.1	gi|408405484|ref|YP_006863467.1|	-	2.5e-07	30.7	0.4	3.8e-06	26.9	0.0	2.7	2	1	1	3	3	3	1	DprA	winged	helix	domain
HTH_24	PF13412.6	gi|408405484|ref|YP_006863467.1|	-	1.1e-05	24.9	0.9	0.001	18.6	0.7	3.0	2	1	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
PadR	PF03551.14	gi|408405484|ref|YP_006863467.1|	-	0.0005	20.0	3.3	0.0014	18.5	0.2	3.1	3	2	1	4	4	3	1	Transcriptional	regulator	PadR-like	family
MarR_2	PF12802.7	gi|408405484|ref|YP_006863467.1|	-	0.00082	19.2	0.0	0.022	14.6	0.0	2.3	2	0	0	2	2	2	1	MarR	family
TrmB	PF01978.19	gi|408405484|ref|YP_006863467.1|	-	0.00083	19.2	0.5	0.038	13.9	0.0	2.4	2	0	0	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
ArsR	PF09824.9	gi|408405484|ref|YP_006863467.1|	-	0.00085	19.0	0.1	0.0079	15.8	0.0	2.1	1	1	0	2	2	2	1	ArsR	transcriptional	regulator
MarR	PF01047.22	gi|408405484|ref|YP_006863467.1|	-	0.0009	19.1	0.0	0.0045	16.9	0.0	2.1	2	0	0	2	2	2	1	MarR	family
HTH_11	PF08279.12	gi|408405484|ref|YP_006863467.1|	-	0.0019	18.1	0.1	0.0068	16.3	0.1	2.0	1	0	0	1	1	1	1	HTH	domain
HTH_38	PF13936.6	gi|408405484|ref|YP_006863467.1|	-	0.055	13.2	0.2	1.1	9.0	0.0	2.5	2	0	0	2	2	2	0	Helix-turn-helix	domain
HTH_AsnC-type	PF13404.6	gi|408405484|ref|YP_006863467.1|	-	0.1	12.5	2.7	1.2	9.1	0.3	3.4	2	2	1	3	3	3	0	AsnC-type	helix-turn-helix	domain
STAT_int	PF02865.17	gi|408405484|ref|YP_006863467.1|	-	0.11	13.0	1.1	0.72	10.3	0.1	2.2	1	1	1	2	2	2	0	STAT	protein,	protein	interaction	domain
HTH_CodY	PF08222.11	gi|408405484|ref|YP_006863467.1|	-	0.12	12.0	0.0	0.34	10.5	0.0	1.8	2	0	0	2	2	2	0	CodY	helix-turn-helix	domain
APG6_N	PF17675.1	gi|408405484|ref|YP_006863467.1|	-	0.64	10.6	4.6	0.29	11.7	1.4	1.9	1	1	1	2	2	2	0	Apg6	coiled-coil	region
FliT	PF05400.13	gi|408405484|ref|YP_006863467.1|	-	0.93	10.4	8.8	0.099	13.5	1.9	2.5	3	0	0	3	3	3	0	Flagellar	protein	FliT
ATPase	PF06745.13	gi|408405485|ref|YP_006863468.1|	-	0.014	14.7	0.0	0.015	14.6	0.0	1.0	1	0	0	1	1	1	0	KaiC
MEDS	PF14417.6	gi|408405485|ref|YP_006863468.1|	-	0.036	13.9	0.0	0.038	13.8	0.0	1.0	1	0	0	1	1	1	0	MEDS:	MEthanogen/methylotroph,	DcmR	Sensory	domain
ABM	PF03992.16	gi|408405486|ref|YP_006863469.1|	-	3e-05	24.0	0.1	3.9e-05	23.7	0.1	1.2	1	0	0	1	1	1	1	Antibiotic	biosynthesis	monooxygenase
PH_17	PF18012.1	gi|408405486|ref|YP_006863469.1|	-	0.037	13.7	0.1	0.37	10.6	0.0	2.2	2	0	0	2	2	2	0	PH	domain
CopG_antitoxin	PF12441.8	gi|408405487|ref|YP_006863470.1|	-	0.0079	16.7	0.1	0.033	14.7	0.0	2.0	2	0	0	2	2	2	1	CopG	antitoxin	of	type	II	toxin-antitoxin	system
Cu-oxidase_3	PF07732.15	gi|408405488|ref|YP_006863471.1|	-	5.9e-25	87.6	7.7	5.8e-23	81.2	0.1	3.8	3	2	0	3	3	3	2	Multicopper	oxidase
Cu-oxidase_2	PF07731.14	gi|408405488|ref|YP_006863471.1|	-	6.3e-16	58.4	5.2	1.3e-05	24.9	0.1	3.5	3	0	0	3	3	3	3	Multicopper	oxidase
Copper-bind	PF00127.20	gi|408405488|ref|YP_006863471.1|	-	9.1e-10	38.9	2.7	1.7e-08	34.8	0.6	3.4	2	1	0	2	2	2	1	Copper	binding	proteins,	plastocyanin/azurin	family
Cupredoxin_1	PF13473.6	gi|408405488|ref|YP_006863471.1|	-	2.4e-09	37.2	0.0	5e-08	33.0	0.0	2.8	3	0	0	3	3	3	1	Cupredoxin-like	domain
Cu-oxidase	PF00394.22	gi|408405488|ref|YP_006863471.1|	-	0.014	15.5	0.0	0.36	11.0	0.0	2.5	2	0	0	2	2	2	0	Multicopper	oxidase
Self-incomp_S1	PF05938.11	gi|408405488|ref|YP_006863471.1|	-	0.058	13.9	0.0	3	8.5	0.0	2.3	2	0	0	2	2	2	0	Plant	self-incompatibility	protein	S1
Lipase_C	PF18067.1	gi|408405488|ref|YP_006863471.1|	-	0.059	13.9	0.4	1.7	9.3	0.1	2.5	2	0	0	2	2	2	0	Lipase	C-terminal	domain
DUF488	PF04343.13	gi|408405489|ref|YP_006863472.1|	-	3.4e-31	108.4	0.1	3.8e-31	108.2	0.1	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function,	DUF488
Fer4	PF00037.27	gi|408405490|ref|YP_006863473.1|	-	3.3e-10	39.4	11.8	2.7e-06	27.0	1.3	2.3	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_7	PF12838.7	gi|408405490|ref|YP_006863473.1|	-	7e-10	39.4	2.5	0.00011	22.7	0.6	2.4	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_16	PF13484.6	gi|408405490|ref|YP_006863473.1|	-	4.2e-08	34.0	4.0	0.0004	21.2	0.5	2.4	2	0	0	2	2	2	2	4Fe-4S	double	cluster	binding	domain
Fer4_9	PF13187.6	gi|408405490|ref|YP_006863473.1|	-	1.4e-07	31.6	7.1	9.4e-07	28.9	7.6	1.9	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_10	PF13237.6	gi|408405490|ref|YP_006863473.1|	-	1.5e-07	31.4	6.5	1.1e-06	28.6	7.0	2.0	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_13	PF13370.6	gi|408405490|ref|YP_006863473.1|	-	2e-06	28.2	5.1	0.0043	17.6	0.3	2.6	2	0	0	2	2	2	2	4Fe-4S	single	cluster	domain	of	Ferredoxin	I
Fer4_6	PF12837.7	gi|408405490|ref|YP_006863473.1|	-	2.7e-06	27.2	12.4	0.0065	16.5	1.4	2.3	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_8	PF13183.6	gi|408405490|ref|YP_006863473.1|	-	1.5e-05	25.3	6.0	0.0031	17.9	8.4	2.3	1	1	2	3	3	3	3	4Fe-4S	dicluster	domain
Fer4_17	PF13534.6	gi|408405490|ref|YP_006863473.1|	-	1.6e-05	25.4	4.4	8.3e-05	23.0	5.0	1.8	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_21	PF14697.6	gi|408405490|ref|YP_006863473.1|	-	1.8e-05	24.8	9.4	0.0035	17.4	9.6	2.3	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_4	PF12800.7	gi|408405490|ref|YP_006863473.1|	-	0.0003	21.0	5.9	0.036	14.6	1.2	2.3	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_15	PF13459.6	gi|408405490|ref|YP_006863473.1|	-	0.00039	21.1	7.3	0.017	15.8	2.1	2.6	2	1	0	2	2	2	2	4Fe-4S	single	cluster	domain
Fer4_2	PF12797.7	gi|408405490|ref|YP_006863473.1|	-	0.0004	20.3	11.1	0.055	13.6	3.6	2.4	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_18	PF13746.6	gi|408405490|ref|YP_006863473.1|	-	0.0005	20.2	5.0	0.0005	20.2	5.0	1.8	1	1	1	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_22	PF17179.4	gi|408405490|ref|YP_006863473.1|	-	0.0089	16.9	0.4	5.8	7.8	0.1	2.3	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_3	PF12798.7	gi|408405490|ref|YP_006863473.1|	-	0.031	15.2	13.9	1.4	10.0	0.8	2.3	2	0	0	2	2	2	0	4Fe-4S	binding	domain
SIMPL	PF04402.14	gi|408405492|ref|YP_006863475.1|	-	4.5e-15	56.6	0.1	5.3e-15	56.4	0.1	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF541)
SIMPL	PF04402.14	gi|408405493|ref|YP_006863476.1|	-	9.5e-10	39.3	0.1	2.2e-09	38.1	0.0	1.6	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF541)
Herpes_UL16	PF03044.14	gi|408405493|ref|YP_006863476.1|	-	0.15	11.3	0.0	0.22	10.8	0.0	1.2	1	0	0	1	1	1	0	Herpesvirus	UL16/UL94	family
MarR	PF01047.22	gi|408405495|ref|YP_006863478.1|	-	7.3e-14	51.4	0.0	1.4e-13	50.5	0.0	1.5	1	0	0	1	1	1	1	MarR	family
MarR_2	PF12802.7	gi|408405495|ref|YP_006863478.1|	-	1.5e-11	44.0	0.2	3.3e-11	42.9	0.1	1.6	2	0	0	2	2	2	1	MarR	family
HTH_27	PF13463.6	gi|408405495|ref|YP_006863478.1|	-	1.2e-05	25.7	0.1	3.7e-05	24.1	0.0	1.9	2	0	0	2	2	2	1	Winged	helix	DNA-binding	domain
HTH_24	PF13412.6	gi|408405495|ref|YP_006863478.1|	-	1.5e-05	24.4	0.0	4.6e-05	22.9	0.0	1.9	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
HTH_IclR	PF09339.10	gi|408405495|ref|YP_006863478.1|	-	0.00057	19.6	0.1	0.0015	18.3	0.1	1.7	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
HTH_34	PF13601.6	gi|408405495|ref|YP_006863478.1|	-	0.011	15.9	0.0	0.021	15.0	0.0	1.4	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
TrmB	PF01978.19	gi|408405495|ref|YP_006863478.1|	-	0.019	14.8	0.0	0.061	13.2	0.0	1.8	2	0	0	2	2	2	0	Sugar-specific	transcriptional	regulator	TrmB
Binary_toxB	PF03495.14	gi|408405495|ref|YP_006863478.1|	-	0.15	12.3	0.0	0.23	11.7	0.0	1.2	1	0	0	1	1	1	0	Clostridial	binary	toxin	B/anthrax	toxin	PA	Ca-binding	domain
DUF2379	PF09543.10	gi|408405497|ref|YP_006863480.1|	-	0.024	14.8	2.4	0.024	14.8	2.4	2.5	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF2379)
ApoLp-III	PF07464.11	gi|408405497|ref|YP_006863480.1|	-	0.032	14.3	13.8	0.2	11.7	13.8	2.1	1	1	0	1	1	1	0	Apolipophorin-III	precursor	(apoLp-III)
DUF4130	PF13566.6	gi|408405497|ref|YP_006863480.1|	-	0.05	13.7	0.4	0.05	13.7	0.4	1.7	2	1	0	2	2	2	0	Domain	of	unknown	function	(DUF4130
DUF948	PF06103.11	gi|408405497|ref|YP_006863480.1|	-	0.083	13.2	10.5	0.47	10.7	4.6	2.5	1	1	2	3	3	3	0	Bacterial	protein	of	unknown	function	(DUF948)
Hema_stalk	PF08720.10	gi|408405497|ref|YP_006863480.1|	-	0.14	11.9	0.7	0.2	11.3	0.5	1.3	1	1	0	1	1	1	0	Influenza	C	hemagglutinin	stalk
DUF4194	PF13835.6	gi|408405497|ref|YP_006863480.1|	-	0.33	10.7	8.3	0.7	9.6	1.7	2.6	1	1	2	3	3	3	0	Domain	of	unknown	function	(DUF4194)
Fib_alpha	PF08702.10	gi|408405497|ref|YP_006863480.1|	-	0.37	11.0	6.2	4.6	7.4	1.1	2.4	1	1	1	2	2	2	0	Fibrinogen	alpha/beta	chain	family
zf-C4H2	PF10146.9	gi|408405497|ref|YP_006863480.1|	-	0.49	10.7	5.7	0.64	10.3	5.1	1.4	1	1	0	1	1	1	0	Zinc	finger-containing	protein
DUF4423	PF14394.6	gi|408405497|ref|YP_006863480.1|	-	0.65	9.7	8.5	0.84	9.3	8.5	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4423)
DUF1664	PF07889.12	gi|408405497|ref|YP_006863480.1|	-	0.71	9.9	7.1	0.32	11.1	2.6	2.1	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF1664)
HTH_12	PF08461.10	gi|408405497|ref|YP_006863480.1|	-	1.5	8.8	7.0	1.1	9.2	3.5	2.3	2	1	1	3	3	3	0	Ribonuclease	R	winged-helix	domain
YtxH	PF12732.7	gi|408405497|ref|YP_006863480.1|	-	2.4	8.8	17.9	1.8e+04	-4.7	17.9	3.4	1	1	0	1	1	0	0	YtxH-like	protein
ALMT	PF11744.8	gi|408405497|ref|YP_006863480.1|	-	6.8	5.4	8.2	8	5.2	8.2	1.0	1	0	0	1	1	1	0	Aluminium	activated	malate	transporter
PqqD	PF05402.12	gi|408405497|ref|YP_006863480.1|	-	7	7.0	6.3	1.8	8.9	0.2	2.7	2	2	1	3	3	3	0	Coenzyme	PQQ	synthesis	protein	D	(PqqD)
Gpr1_Fun34_YaaH	PF01184.19	gi|408405498|ref|YP_006863481.1|	-	0.059	13.0	0.0	0.06	13.0	0.0	1.0	1	0	0	1	1	1	0	GPR1/FUN34/yaaH	family
YtkA	PF13115.6	gi|408405499|ref|YP_006863482.1|	-	0.0023	18.5	0.0	0.11	13.2	0.0	2.7	3	0	0	3	3	3	1	YtkA-like
FixG_C	PF11614.8	gi|408405499|ref|YP_006863482.1|	-	0.039	14.2	0.0	0.09	13.0	0.0	1.5	2	0	0	2	2	2	0	IG-like	fold	at	C-terminal	of	FixG,	putative	oxidoreductase
Methyltransf_25	PF13649.6	gi|408405501|ref|YP_006863484.1|	-	1.2e-06	29.1	0.1	2.1e-06	28.3	0.1	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
CheR	PF01739.18	gi|408405501|ref|YP_006863484.1|	-	4.2e-06	26.4	1.2	5.4e-05	22.8	0.6	2.0	1	1	1	2	2	2	1	CheR	methyltransferase,	SAM	binding	domain
Methyltransf_31	PF13847.6	gi|408405501|ref|YP_006863484.1|	-	0.00026	20.8	0.1	0.0004	20.2	0.1	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_11	PF08241.12	gi|408405501|ref|YP_006863484.1|	-	0.00072	20.2	0.0	0.0014	19.2	0.0	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.12	gi|408405501|ref|YP_006863484.1|	-	0.0011	19.6	0.1	0.0022	18.7	0.1	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.6	gi|408405501|ref|YP_006863484.1|	-	0.0052	16.6	0.0	0.0069	16.2	0.0	1.1	1	0	0	1	1	1	1	Methyltransferase	domain
Rsm22	PF09243.10	gi|408405501|ref|YP_006863484.1|	-	0.15	11.3	0.1	0.27	10.5	0.1	1.4	1	1	0	1	1	1	0	Mitochondrial	small	ribosomal	subunit	Rsm22
HTH_20	PF12840.7	gi|408405502|ref|YP_006863485.1|	-	0.014	15.5	0.1	0.028	14.5	0.1	1.5	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_Crp_2	PF13545.6	gi|408405502|ref|YP_006863485.1|	-	0.04	13.9	0.2	0.16	12.0	0.0	2.0	2	0	0	2	2	2	0	Crp-like	helix-turn-helix	domain
HTH_11	PF08279.12	gi|408405502|ref|YP_006863485.1|	-	0.099	12.6	2.1	0.37	10.8	0.0	2.8	3	0	0	3	3	3	0	HTH	domain
AbiEii	PF08843.11	gi|408405503|ref|YP_006863486.1|	-	1.4e-05	25.2	0.1	0.00018	21.6	0.1	2.1	1	1	0	1	1	1	1	Nucleotidyl	transferase	AbiEii	toxin,	Type	IV	TA	system
GAD	PF02938.14	gi|408405503|ref|YP_006863486.1|	-	0.095	12.9	0.0	0.22	11.8	0.0	1.6	1	0	0	1	1	1	0	GAD	domain
AlbA_2	PF04326.14	gi|408405504|ref|YP_006863487.1|	-	9.9e-18	64.6	1.0	1.7e-17	63.9	0.2	1.8	2	0	0	2	2	2	1	Putative	DNA-binding	domain
HEPN	PF05168.14	gi|408405505|ref|YP_006863488.1|	-	1.7e-05	24.9	1.6	0.00083	19.5	0.5	2.6	2	0	0	2	2	2	2	HEPN	domain
N6_Mtase	PF02384.16	gi|408405506|ref|YP_006863489.1|	-	2.7e-120	401.3	0.0	3.7e-120	400.9	0.0	1.1	1	0	0	1	1	1	1	N-6	DNA	Methylase
HsdM_N	PF12161.8	gi|408405506|ref|YP_006863489.1|	-	3.9e-25	89.1	2.3	3.9e-25	89.1	2.3	2.2	2	0	0	2	2	2	1	HsdM	N-terminal	domain
MTS	PF05175.14	gi|408405506|ref|YP_006863489.1|	-	9.4e-06	25.3	0.0	1.8e-05	24.4	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	small	domain
Methyltransf_15	PF09445.10	gi|408405506|ref|YP_006863489.1|	-	0.033	13.7	0.0	0.058	13.0	0.0	1.4	1	0	0	1	1	1	0	RNA	cap	guanine-N2	methyltransferase
UPF0020	PF01170.18	gi|408405506|ref|YP_006863489.1|	-	0.071	12.8	0.9	0.96	9.1	0.9	2.2	1	1	0	1	1	1	0	Putative	RNA	methylase	family	UPF0020
Seryl_tRNA_N	PF02403.22	gi|408405506|ref|YP_006863489.1|	-	0.072	13.3	7.4	1.5	9.1	0.1	2.6	3	0	0	3	3	3	0	Seryl-tRNA	synthetase	N-terminal	domain
AviRa	PF11599.8	gi|408405506|ref|YP_006863489.1|	-	0.082	12.4	0.0	0.14	11.5	0.0	1.3	1	0	0	1	1	1	0	RRNA	methyltransferase	AviRa
DUF2040	PF09745.9	gi|408405506|ref|YP_006863489.1|	-	1.4	9.0	8.2	0.12	12.5	2.8	1.9	2	0	0	2	2	2	0	Coiled-coil	domain-containing	protein	55	(DUF2040)
Methylase_S	PF01420.19	gi|408405507|ref|YP_006863490.1|	-	8e-52	175.9	0.3	2.5e-33	115.7	0.4	2.1	2	0	0	2	2	2	2	Type	I	restriction	modification	DNA	specificity	domain
DUF3387	PF11867.8	gi|408405508|ref|YP_006863491.1|	-	1.1e-126	422.7	20.4	1.5e-126	422.3	18.4	2.0	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF3387)
SWI2_SNF2	PF18766.1	gi|408405508|ref|YP_006863491.1|	-	3.2e-88	295.2	2.1	3.3e-88	295.1	0.0	2.1	2	0	0	2	2	2	1	SWI2/SNF2	ATPase
HSDR_N	PF04313.14	gi|408405508|ref|YP_006863491.1|	-	2.6e-44	151.5	0.2	2.6e-44	151.5	0.2	2.9	2	1	1	3	3	3	1	Type	I	restriction	enzyme	R	protein	N	terminus	(HSDR_N)
ResIII	PF04851.15	gi|408405508|ref|YP_006863491.1|	-	1.2e-20	74.2	2.6	1.9e-20	73.5	0.0	2.6	3	0	0	3	3	3	1	Type	III	restriction	enzyme,	res	subunit
Sulfotransfer_3	PF13469.6	gi|408405508|ref|YP_006863491.1|	-	0.082	13.3	0.2	12	6.2	0.0	3.1	2	1	0	3	3	3	0	Sulfotransferase	family
SNF2_N	PF00176.23	gi|408405508|ref|YP_006863491.1|	-	0.11	11.2	0.1	0.53	9.0	0.0	2.2	2	1	0	2	2	2	0	SNF2	family	N-terminal	domain
DUF1217	PF06748.12	gi|408405508|ref|YP_006863491.1|	-	0.45	10.6	2.7	0.65	10.0	1.3	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1217)
Linker_histone	PF00538.19	gi|408405508|ref|YP_006863491.1|	-	0.55	10.6	4.7	2.4	8.6	0.1	3.0	2	0	0	2	2	2	0	linker	histone	H1	and	H5	family
Ku_C	PF03730.14	gi|408405508|ref|YP_006863491.1|	-	0.7	10.6	3.8	0.67	10.7	0.8	2.6	2	0	0	2	2	2	0	Ku70/Ku80	C-terminal	arm
LPD3	PF18798.1	gi|408405508|ref|YP_006863491.1|	-	0.93	9.8	8.3	1.3	9.3	2.6	3.2	2	1	1	3	3	3	0	Large	polyvalent	protein-associated	domain	3
HTH_23	PF13384.6	gi|408405510|ref|YP_006863493.1|	-	0.0075	16.0	0.1	0.018	14.8	0.1	1.7	1	0	0	1	1	1	1	Homeodomain-like	domain
DUF4349	PF14257.6	gi|408405510|ref|YP_006863493.1|	-	0.014	14.9	3.9	0.032	13.7	3.9	1.6	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4349)
HTH_38	PF13936.6	gi|408405510|ref|YP_006863493.1|	-	0.052	13.3	0.0	0.48	10.2	0.0	2.5	1	1	0	1	1	1	0	Helix-turn-helix	domain
HEPN_Swt1	PF18731.1	gi|408405510|ref|YP_006863493.1|	-	0.053	13.9	3.2	2.1	8.7	0.3	2.5	2	1	1	3	3	3	0	Swt1-like	HEPN
MarR	PF01047.22	gi|408405511|ref|YP_006863494.1|	-	0.0018	18.2	0.0	0.0045	16.9	0.0	1.7	1	0	0	1	1	1	1	MarR	family
HTH_27	PF13463.6	gi|408405511|ref|YP_006863494.1|	-	0.0036	17.8	0.0	0.021	15.3	0.0	2.2	2	0	0	2	2	2	1	Winged	helix	DNA-binding	domain
MarR_2	PF12802.7	gi|408405511|ref|YP_006863494.1|	-	0.035	14.0	0.0	0.085	12.8	0.0	1.6	1	0	0	1	1	1	0	MarR	family
Phage_integrase	PF00589.22	gi|408405514|ref|YP_006863497.1|	-	7.4e-09	35.6	0.0	6e-08	32.7	0.0	2.3	2	1	0	2	2	2	1	Phage	integrase	family
Phage_int_SAM_4	PF13495.6	gi|408405514|ref|YP_006863497.1|	-	1.1e-05	25.8	1.0	3.6e-05	24.1	0.2	2.3	2	0	0	2	2	2	1	Phage	integrase,	N-terminal	SAM-like	domain
zf-ribbon_3	PF13248.6	gi|408405514|ref|YP_006863497.1|	-	3.2e-05	23.2	2.7	6.6e-05	22.2	2.7	1.5	1	0	0	1	1	1	1	zinc-ribbon	domain
DZR	PF12773.7	gi|408405514|ref|YP_006863497.1|	-	4.3e-05	23.5	0.5	9.6e-05	22.3	0.5	1.5	1	0	0	1	1	1	1	Double	zinc	ribbon
zinc_ribbon_2	PF13240.6	gi|408405514|ref|YP_006863497.1|	-	0.0048	16.6	7.7	0.0048	16.6	7.7	1.9	2	0	0	2	2	2	1	zinc-ribbon	domain
zinc_ribbon_15	PF17032.5	gi|408405514|ref|YP_006863497.1|	-	0.024	15.4	0.8	0.059	14.1	0.8	1.7	1	0	0	1	1	1	0	zinc-ribbon	family
SGS	PF05002.15	gi|408405514|ref|YP_006863497.1|	-	0.049	13.7	0.7	7.3	6.8	0.0	2.4	2	0	0	2	2	2	0	SGS	domain
Imm9	PF15587.6	gi|408405514|ref|YP_006863497.1|	-	0.081	12.6	0.2	0.18	11.5	0.2	1.5	1	0	0	1	1	1	0	Immunity	protein	9
EF-hand_like	PF09279.11	gi|408405514|ref|YP_006863497.1|	-	0.14	12.7	2.4	0.29	11.7	0.2	2.4	2	0	0	2	2	2	0	Phosphoinositide-specific	phospholipase	C,	efhand-like
Imm-NTF2	PF15655.6	gi|408405514|ref|YP_006863497.1|	-	0.19	12.0	3.5	9.1	6.6	0.0	2.9	3	1	0	3	3	3	0	NTF2	fold	immunity	protein
DUF4096	PF13340.6	gi|408405515|ref|YP_006863498.1|	-	0.068	13.4	0.0	0.079	13.2	0.0	1.1	1	0	0	1	1	1	0	Putative	transposase	of	IS4/5	family	(DUF4096)
DSX_dimer	PF08828.10	gi|408405515|ref|YP_006863498.1|	-	0.1	12.3	0.1	0.12	12.0	0.1	1.3	1	0	0	1	1	1	0	Doublesex	dimerisation	domain
baeRF_family5	PF18846.1	gi|408405516|ref|YP_006863499.1|	-	0.11	12.7	2.2	0.11	12.7	0.9	1.6	1	1	1	2	2	2	0	Bacterial	archaeo-eukaryotic	release	factor	family	5
DUF3976	PF13121.6	gi|408405516|ref|YP_006863499.1|	-	0.25	11.5	0.0	0.47	10.6	0.0	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3976)
OSCP	PF00213.18	gi|408405517|ref|YP_006863500.1|	-	0.085	13.0	0.4	0.14	12.2	0.1	1.5	2	0	0	2	2	2	0	ATP	synthase	delta	(OSCP)	subunit
Rad50_zn_hook	PF04423.14	gi|408405517|ref|YP_006863500.1|	-	1.3	8.9	9.5	3	7.8	0.7	2.5	2	0	0	2	2	2	0	Rad50	zinc	hook	motif
HypA	PF01155.19	gi|408405517|ref|YP_006863500.1|	-	2.5	8.2	5.7	4.3	7.4	5.7	1.4	1	0	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
TrmB	PF01978.19	gi|408405519|ref|YP_006863502.1|	-	2.4e-14	52.9	0.0	5.1e-14	51.9	0.0	1.6	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_IclR	PF09339.10	gi|408405519|ref|YP_006863502.1|	-	6e-05	22.8	0.0	0.00017	21.3	0.0	1.7	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
Regulator_TrmB	PF11495.8	gi|408405519|ref|YP_006863502.1|	-	0.00055	19.2	0.3	0.00079	18.7	0.3	1.3	1	0	0	1	1	1	1	Archaeal	transcriptional	regulator	TrmB
MarR_2	PF12802.7	gi|408405519|ref|YP_006863502.1|	-	0.00064	19.6	0.0	0.001	18.9	0.0	1.4	1	0	0	1	1	1	1	MarR	family
HTH_24	PF13412.6	gi|408405519|ref|YP_006863502.1|	-	0.022	14.3	0.0	0.047	13.3	0.0	1.6	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
Sulfolobus_pRN	PF05584.11	gi|408405519|ref|YP_006863502.1|	-	0.034	14.2	0.0	0.069	13.2	0.0	1.5	1	0	0	1	1	1	0	Sulfolobus	plasmid	regulatory	protein
HTH_27	PF13463.6	gi|408405519|ref|YP_006863502.1|	-	0.036	14.6	0.0	0.097	13.2	0.0	1.8	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
DUF977	PF06163.11	gi|408405519|ref|YP_006863502.1|	-	0.06	13.3	0.0	0.11	12.4	0.0	1.4	1	0	0	1	1	1	0	Bacterial	protein	of	unknown	function	(DUF977)
DUF1510	PF07423.11	gi|408405519|ref|YP_006863502.1|	-	0.078	13.1	0.1	0.17	12.0	0.1	1.6	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1510)
VWA_2	PF13519.6	gi|408405520|ref|YP_006863503.1|	-	9.1e-05	23.1	0.0	0.00067	20.3	0.0	2.4	3	0	0	3	3	3	1	von	Willebrand	factor	type	A	domain
AAA_5	PF07728.14	gi|408405521|ref|YP_006863504.1|	-	8.4e-22	77.7	0.0	3.3e-21	75.7	0.0	1.9	2	0	0	2	2	2	1	AAA	domain	(dynein-related	subfamily)
CbbQ_C	PF08406.10	gi|408405521|ref|YP_006863504.1|	-	1.9e-19	69.7	0.1	3e-19	69.0	0.1	1.3	1	0	0	1	1	1	1	CbbQ/NirQ/NorQ	C-terminal
AAA	PF00004.29	gi|408405521|ref|YP_006863504.1|	-	1.2e-05	25.7	0.0	2.8e-05	24.6	0.0	1.7	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
Sigma54_activat	PF00158.26	gi|408405521|ref|YP_006863504.1|	-	0.0002	21.1	0.0	0.00037	20.2	0.0	1.4	1	0	0	1	1	1	1	Sigma-54	interaction	domain
AAA_6	PF12774.7	gi|408405521|ref|YP_006863504.1|	-	0.00092	18.3	0.0	0.0016	17.5	0.0	1.3	1	0	0	1	1	1	1	Hydrolytic	ATP	binding	site	of	dynein	motor	region
Mg_chelatase	PF01078.21	gi|408405521|ref|YP_006863504.1|	-	0.0016	17.8	0.0	0.58	9.5	0.0	2.8	3	0	0	3	3	3	1	Magnesium	chelatase,	subunit	ChlI
IstB_IS21	PF01695.17	gi|408405521|ref|YP_006863504.1|	-	0.0054	16.5	0.0	0.01	15.6	0.0	1.4	1	0	0	1	1	1	1	IstB-like	ATP	binding	protein
AAA_30	PF13604.6	gi|408405521|ref|YP_006863504.1|	-	0.015	15.0	0.0	0.72	9.5	0.0	2.4	3	0	0	3	3	3	0	AAA	domain
PhoH	PF02562.16	gi|408405521|ref|YP_006863504.1|	-	0.073	12.5	0.0	0.15	11.5	0.0	1.5	1	0	0	1	1	1	0	PhoH-like	protein
AAA_7	PF12775.7	gi|408405521|ref|YP_006863504.1|	-	0.079	12.5	0.0	0.2	11.2	0.0	1.7	1	1	0	1	1	1	0	P-loop	containing	dynein	motor	region
AAA_16	PF13191.6	gi|408405521|ref|YP_006863504.1|	-	0.1	13.0	0.0	0.23	11.9	0.0	1.5	1	0	0	1	1	1	0	AAA	ATPase	domain
AAA_22	PF13401.6	gi|408405521|ref|YP_006863504.1|	-	0.1	12.9	0.2	0.48	10.7	0.2	2.1	1	1	0	1	1	1	0	AAA	domain
AAA_21	PF13304.6	gi|408405521|ref|YP_006863504.1|	-	0.13	12.0	0.2	1.4	8.7	0.0	2.1	2	0	0	2	2	2	0	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
DUF3185	PF11381.8	gi|408405523|ref|YP_006863506.1|	-	0.027	14.5	8.8	0.2	11.7	2.1	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3185)
Pox_A14	PF05767.12	gi|408405523|ref|YP_006863506.1|	-	0.19	11.9	2.3	0.23	11.7	2.3	1.1	1	0	0	1	1	1	0	Poxvirus	virion	envelope	protein	A14
Ribosomal_60s	PF00428.19	gi|408405524|ref|YP_006863507.1|	-	0.13	12.9	5.0	0.11	13.1	2.5	2.2	2	0	0	2	2	2	0	60s	Acidic	ribosomal	protein
LTD	PF00932.19	gi|408405526|ref|YP_006863509.1|	-	0.02	15.2	7.9	0.039	14.3	7.9	1.5	1	1	0	1	1	1	0	Lamin	Tail	Domain
Arch_flagellin	PF01917.16	gi|408405526|ref|YP_006863509.1|	-	0.46	10.6	22.3	1e+02	3.0	22.3	2.3	1	1	0	1	1	1	0	Archaebacterial	flagellin
T2SSE	PF00437.20	gi|408405527|ref|YP_006863510.1|	-	1.6e-48	165.1	0.0	2.4e-48	164.6	0.0	1.2	1	0	0	1	1	1	1	Type	II/IV	secretion	system	protein
ABC_tran	PF00005.27	gi|408405527|ref|YP_006863510.1|	-	0.0026	18.3	0.0	0.0081	16.7	0.0	1.8	1	0	0	1	1	1	1	ABC	transporter
AAA_29	PF13555.6	gi|408405527|ref|YP_006863510.1|	-	0.0034	17.1	0.1	0.0071	16.1	0.1	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_7	PF12775.7	gi|408405527|ref|YP_006863510.1|	-	0.015	14.8	0.0	0.031	13.8	0.0	1.4	1	0	0	1	1	1	0	P-loop	containing	dynein	motor	region
G-alpha	PF00503.20	gi|408405527|ref|YP_006863510.1|	-	0.031	13.4	0.1	0.63	9.1	0.0	2.1	2	0	0	2	2	2	0	G-protein	alpha	subunit
RsgA_GTPase	PF03193.16	gi|408405527|ref|YP_006863510.1|	-	0.11	12.3	0.0	0.27	11.1	0.0	1.6	1	0	0	1	1	1	0	RsgA	GTPase
AAA_23	PF13476.6	gi|408405527|ref|YP_006863510.1|	-	0.12	12.8	0.2	0.12	12.8	0.2	2.4	2	1	0	2	2	2	0	AAA	domain
AAA_22	PF13401.6	gi|408405527|ref|YP_006863510.1|	-	0.14	12.5	0.0	0.33	11.2	0.0	1.7	1	0	0	1	1	1	0	AAA	domain
Pkip-1	PF06878.11	gi|408405527|ref|YP_006863510.1|	-	0.56	10.3	4.1	0.42	10.7	0.5	2.1	2	0	0	2	2	2	0	Pkip-1	protein
T2SSF	PF00482.23	gi|408405528|ref|YP_006863511.1|	-	4.9e-13	49.1	4.7	2e-08	34.3	0.1	2.6	2	0	0	2	2	2	2	Type	II	secretion	system	(T2SS),	protein	F
HTH_45	PF14947.6	gi|408405529|ref|YP_006863512.1|	-	0.0073	16.3	1.3	0.0096	15.9	0.2	1.8	2	0	0	2	2	2	1	Winged	helix-turn-helix
TrmB	PF01978.19	gi|408405529|ref|YP_006863512.1|	-	0.017	15.0	0.0	0.03	14.2	0.0	1.4	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
Asn_synthase	PF00733.21	gi|408405530|ref|YP_006863513.1|	-	1.1e-37	130.5	0.0	2.9e-25	89.7	0.0	2.0	1	1	1	2	2	2	2	Asparagine	synthase
NAD_synthase	PF02540.17	gi|408405530|ref|YP_006863513.1|	-	4.5e-08	32.5	0.1	6.1e-08	32.1	0.1	1.2	1	0	0	1	1	1	1	NAD	synthase
ATP_bind_3	PF01171.20	gi|408405530|ref|YP_006863513.1|	-	0.00033	20.5	0.0	0.0007	19.4	0.0	1.6	1	0	0	1	1	1	1	PP-loop	family
QueC	PF06508.13	gi|408405530|ref|YP_006863513.1|	-	0.0008	19.0	0.0	0.0014	18.2	0.0	1.4	1	0	0	1	1	1	1	Queuosine	biosynthesis	protein	QueC
tRNA_Me_trans	PF03054.16	gi|408405530|ref|YP_006863513.1|	-	0.001	17.9	0.1	0.0027	16.5	0.1	1.7	1	1	0	1	1	1	1	tRNA	methyl	transferase
His_biosynth	PF00977.21	gi|408405530|ref|YP_006863513.1|	-	0.023	14.2	0.1	0.031	13.7	0.1	1.2	1	0	0	1	1	1	0	Histidine	biosynthesis	protein
MazE_antitoxin	PF04014.18	gi|408405531|ref|YP_006863514.1|	-	0.033	14.1	0.0	0.055	13.4	0.0	1.4	1	0	0	1	1	1	0	Antidote-toxin	recognition	MazE,	bacterial	antitoxin
PIN	PF01850.21	gi|408405532|ref|YP_006863515.1|	-	3.5e-09	37.2	0.4	4.2e-09	36.9	0.4	1.1	1	0	0	1	1	1	1	PIN	domain
Cas_Cas1	PF01867.16	gi|408405533|ref|YP_006863516.1|	-	6.4e-10	38.6	0.0	6.8e-10	38.5	0.0	1.0	1	0	0	1	1	1	1	CRISPR	associated	protein	Cas1
DUF4211	PF13926.6	gi|408405533|ref|YP_006863516.1|	-	0.078	13.0	0.0	0.086	12.9	0.0	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4211)
SIR2	PF02146.17	gi|408405533|ref|YP_006863516.1|	-	0.13	12.2	0.1	0.16	11.9	0.1	1.1	1	0	0	1	1	1	0	Sir2	family
Cas_Cas1	PF01867.16	gi|408405534|ref|YP_006863517.1|	-	1.5e-13	50.5	0.0	1.6e-13	50.4	0.0	1.0	1	0	0	1	1	1	1	CRISPR	associated	protein	Cas1
HTH_OrfB_IS605	PF12323.8	gi|408405535|ref|YP_006863518.1|	-	3.5e-07	29.6	1.0	3.5e-07	29.6	1.0	2.1	2	1	1	3	3	3	1	Helix-turn-helix	domain
PTPS	PF01242.19	gi|408405536|ref|YP_006863519.1|	-	2.3e-19	69.6	0.0	4.9e-18	65.3	0.0	2.1	1	1	1	2	2	2	2	6-pyruvoyl	tetrahydropterin	synthase
QueC	PF06508.13	gi|408405537|ref|YP_006863520.1|	-	1.1e-48	165.5	0.0	1.4e-48	165.2	0.0	1.1	1	0	0	1	1	1	1	Queuosine	biosynthesis	protein	QueC
ThiI	PF02568.14	gi|408405537|ref|YP_006863520.1|	-	0.00014	21.5	0.0	0.0011	18.6	0.0	2.2	1	1	0	1	1	1	1	Thiamine	biosynthesis	protein	(ThiI)
tRNA_Me_trans	PF03054.16	gi|408405537|ref|YP_006863520.1|	-	0.0048	15.7	0.0	0.069	11.9	0.0	2.0	2	0	0	2	2	2	1	tRNA	methyl	transferase
Asn_synthase	PF00733.21	gi|408405537|ref|YP_006863520.1|	-	0.011	15.5	0.0	0.017	14.8	0.0	1.3	1	0	0	1	1	1	0	Asparagine	synthase
Arginosuc_synth	PF00764.19	gi|408405537|ref|YP_006863520.1|	-	0.042	13.1	0.0	0.27	10.5	0.0	1.9	2	0	0	2	2	2	0	Arginosuccinate	synthase
ATP_bind_3	PF01171.20	gi|408405537|ref|YP_006863520.1|	-	0.05	13.4	0.0	0.16	11.7	0.0	2.0	1	1	0	1	1	1	0	PP-loop	family
NAD_synthase	PF02540.17	gi|408405537|ref|YP_006863520.1|	-	0.089	11.9	0.0	0.53	9.4	0.0	1.9	2	0	0	2	2	2	0	NAD	synthase
CLP1_P	PF16575.5	gi|408405538|ref|YP_006863521.1|	-	1.6e-27	96.5	0.0	2.2e-27	96.1	0.0	1.2	1	0	0	1	1	1	1	mRNA	cleavage	and	polyadenylation	factor	CLP1	P-loop
AAA_25	PF13481.6	gi|408405538|ref|YP_006863521.1|	-	0.15	11.6	0.0	0.28	10.7	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
AAA_7	PF12775.7	gi|408405538|ref|YP_006863521.1|	-	0.15	11.5	0.1	0.29	10.6	0.1	1.4	1	0	0	1	1	1	0	P-loop	containing	dynein	motor	region
AAA_29	PF13555.6	gi|408405538|ref|YP_006863521.1|	-	0.31	10.8	1.0	0.63	9.8	0.1	1.9	2	0	0	2	2	2	0	P-loop	containing	region	of	AAA	domain
AA_permease_2	PF13520.6	gi|408405539|ref|YP_006863522.1|	-	1.1e-41	143.1	50.1	1.5e-41	142.6	50.1	1.2	1	0	0	1	1	1	1	Amino	acid	permease
AA_permease	PF00324.21	gi|408405539|ref|YP_006863522.1|	-	2.6e-31	108.8	44.3	3.5e-31	108.3	44.3	1.1	1	0	0	1	1	1	1	Amino	acid	permease
Usp	PF00582.26	gi|408405539|ref|YP_006863522.1|	-	7.7e-11	42.7	0.1	4.2e-06	27.3	0.1	3.2	2	1	0	2	2	2	2	Universal	stress	protein	family
AA_permease_C	PF13906.6	gi|408405539|ref|YP_006863522.1|	-	0.00014	21.9	4.2	0.00014	21.9	4.2	3.3	3	0	0	3	3	3	1	C-terminus	of	AA_permease
CDC48_N	PF02359.18	gi|408405540|ref|YP_006863523.1|	-	2.6e-17	62.8	2.3	5e-17	61.8	1.1	1.9	2	0	0	2	2	2	1	Cell	division	protein	48	(CDC48),	N-terminal	domain
BNR_2	PF13088.6	gi|408405543|ref|YP_006863526.1|	-	0.00017	21.0	1.3	0.012	15.0	0.1	2.6	3	0	0	3	3	3	2	BNR	repeat-like	domain
BNR	PF02012.20	gi|408405543|ref|YP_006863526.1|	-	0.0026	17.5	6.0	2.5	8.5	0.0	4.7	3	0	0	3	3	3	2	BNR/Asp-box	repeat
HTH_45	PF14947.6	gi|408405544|ref|YP_006863527.1|	-	1e-06	28.6	0.0	6.6e-06	26.0	0.0	1.9	1	1	1	2	2	2	2	Winged	helix-turn-helix
MarR	PF01047.22	gi|408405544|ref|YP_006863527.1|	-	2.3e-05	24.2	0.0	3.6e-05	23.6	0.0	1.2	1	0	0	1	1	1	1	MarR	family
HTH_24	PF13412.6	gi|408405544|ref|YP_006863527.1|	-	0.0025	17.3	0.0	0.0039	16.7	0.0	1.3	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_IclR	PF09339.10	gi|408405544|ref|YP_006863527.1|	-	0.059	13.2	0.0	0.091	12.6	0.0	1.4	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
DUF72	PF01904.18	gi|408405545|ref|YP_006863528.1|	-	1.7e-59	201.6	0.3	2e-59	201.3	0.3	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF72
zf-ribbon_3	PF13248.6	gi|408405546|ref|YP_006863529.1|	-	0.0018	17.6	0.8	0.33	10.4	0.1	2.2	2	0	0	2	2	2	2	zinc-ribbon	domain
Zn_Tnp_IS1595	PF12760.7	gi|408405546|ref|YP_006863529.1|	-	0.021	14.8	0.6	0.044	13.8	0.6	1.6	1	0	0	1	1	1	0	Transposase	zinc-ribbon	domain
zf-HIT	PF04438.16	gi|408405546|ref|YP_006863529.1|	-	0.036	14.0	0.8	6.1	6.8	0.1	2.4	2	0	0	2	2	2	0	HIT	zinc	finger
zinc_ribbon_4	PF13717.6	gi|408405546|ref|YP_006863529.1|	-	0.066	13.2	2.5	0.07	13.1	0.2	2.0	2	0	0	2	2	2	0	zinc-ribbon	domain
Desulfoferrod_N	PF06397.12	gi|408405546|ref|YP_006863529.1|	-	0.12	12.1	1.5	1.3	8.7	0.0	2.2	2	0	0	2	2	2	0	Desulfoferrodoxin,	N-terminal	domain
zf-C2H2_3	PF13878.6	gi|408405546|ref|YP_006863529.1|	-	0.14	12.0	0.1	9.5	6.1	0.0	2.3	2	0	0	2	2	2	0	zinc-finger	of	acetyl-transferase	ESCO
MCM_OB	PF17207.3	gi|408405546|ref|YP_006863529.1|	-	0.14	12.0	0.0	0.18	11.6	0.0	1.1	1	0	0	1	1	1	0	MCM	OB	domain
Zn_ribbon_SprT	PF17283.2	gi|408405546|ref|YP_006863529.1|	-	0.49	10.4	4.0	2.8	7.9	0.2	2.3	1	1	1	2	2	2	0	SprT-like	zinc	ribbon	domain
TF_Zn_Ribbon	PF08271.12	gi|408405546|ref|YP_006863529.1|	-	0.51	9.9	2.8	4.9	6.7	2.8	2.1	1	1	0	1	1	1	0	TFIIB	zinc-binding
NinG	PF05766.12	gi|408405550|ref|YP_006863533.1|	-	0.00019	21.5	8.1	0.0002	21.3	8.1	1.0	1	0	0	1	1	1	1	Bacteriophage	Lambda	NinG	protein
Ecl1	PF12855.7	gi|408405550|ref|YP_006863533.1|	-	0.0012	20.0	5.2	0.0017	19.6	5.2	1.2	1	1	0	1	1	1	1	ECL1/2/3	zinc	binding	proteins
zf-C2H2_jaz	PF12171.8	gi|408405550|ref|YP_006863533.1|	-	0.0036	17.5	1.7	0.0076	16.5	1.7	1.6	1	0	0	1	1	1	1	Zinc-finger	double-stranded	RNA-binding
Molybdop_Fe4S4	PF04879.16	gi|408405550|ref|YP_006863533.1|	-	0.028	14.4	1.3	0.1	12.6	0.0	2.1	2	0	0	2	2	2	0	Molybdopterin	oxidoreductase	Fe4S4	domain
DUF4694	PF15765.5	gi|408405551|ref|YP_006863534.1|	-	0.05	13.6	0.0	0.054	13.5	0.0	1.0	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4694)
INSC_LBD	PF16748.5	gi|408405551|ref|YP_006863534.1|	-	0.068	12.6	0.2	0.09	12.2	0.2	1.2	1	0	0	1	1	1	0	Inscuteable	LGN-binding	domain
HD	PF01966.22	gi|408405553|ref|YP_006863536.1|	-	1.2e-12	48.1	0.3	2.3e-12	47.2	0.1	1.6	2	0	0	2	2	2	1	HD	domain
DUF2274	PF10038.9	gi|408405553|ref|YP_006863536.1|	-	0.08	13.4	0.0	0.2	12.1	0.0	1.6	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2274)
T6SS_HCP	PF05638.12	gi|408405555|ref|YP_006863538.1|	-	3.7e-11	43.5	0.1	3.9e-11	43.4	0.1	1.0	1	0	0	1	1	1	1	Type	VI	secretion	system	effector,	Hcp
Tubulin	PF00091.25	gi|408405557|ref|YP_006863540.1|	-	3.9e-32	112.0	0.4	6e-32	111.4	0.4	1.3	1	0	0	1	1	1	1	Tubulin/FtsZ	family,	GTPase	domain
FtsZ_C	PF12327.8	gi|408405557|ref|YP_006863540.1|	-	2.6e-26	91.8	1.2	6.5e-26	90.5	1.2	1.7	1	0	0	1	1	1	1	FtsZ	family,	C-terminal	domain
Tubulin_2	PF13809.6	gi|408405557|ref|YP_006863540.1|	-	0.034	13.3	3.0	0.14	11.3	0.2	2.1	2	0	0	2	2	2	0	Tubulin	like
Radical_SAM	PF04055.21	gi|408405559|ref|YP_006863542.1|	-	1.2e-08	35.5	0.0	2.5e-08	34.5	0.0	1.6	1	0	0	1	1	1	1	Radical	SAM	superfamily
HTH_20	PF12840.7	gi|408405560|ref|YP_006863543.1|	-	0.0078	16.3	0.0	2.5	8.2	0.0	3.0	4	0	0	4	4	4	2	Helix-turn-helix	domain
TrmB	PF01978.19	gi|408405560|ref|YP_006863543.1|	-	0.045	13.6	0.6	0.28	11.1	0.1	2.4	2	0	0	2	2	2	0	Sugar-specific	transcriptional	regulator	TrmB
REGB_T4	PF10715.9	gi|408405560|ref|YP_006863543.1|	-	0.049	13.8	0.1	0.084	13.1	0.1	1.3	1	0	0	1	1	1	0	T4-page	Endoribonuclease	RegB
HTH_45	PF14947.6	gi|408405560|ref|YP_006863543.1|	-	0.072	13.1	0.0	0.2	11.7	0.0	1.8	1	0	0	1	1	1	0	Winged	helix-turn-helix
UbiA	PF01040.18	gi|408405561|ref|YP_006863544.1|	-	7.6e-32	110.6	14.1	1e-31	110.1	14.1	1.1	1	0	0	1	1	1	1	UbiA	prenyltransferase	family
zf-C2H2_2	PF12756.7	gi|408405562|ref|YP_006863545.1|	-	0.015	15.6	0.2	0.015	15.6	0.2	1.1	1	0	0	1	1	1	0	C2H2	type	zinc-finger	(2	copies)
zf-C2H2_jaz	PF12171.8	gi|408405562|ref|YP_006863545.1|	-	0.028	14.7	1.2	0.052	13.9	1.2	1.5	1	0	0	1	1	1	0	Zinc-finger	double-stranded	RNA-binding
Glyco_transf_4	PF13439.6	gi|408405562|ref|YP_006863545.1|	-	0.1	12.6	0.0	0.1	12.6	0.0	1.1	1	0	0	1	1	1	0	Glycosyltransferase	Family	4
MEDS	PF14417.6	gi|408405563|ref|YP_006863546.1|	-	2.4e-09	37.2	0.0	1.2e-08	34.9	0.0	1.8	2	0	0	2	2	2	1	MEDS:	MEthanogen/methylotroph,	DcmR	Sensory	domain
ATPase	PF06745.13	gi|408405563|ref|YP_006863546.1|	-	0.0015	17.9	0.1	0.0025	17.2	0.1	1.2	1	0	0	1	1	1	1	KaiC
DHO_dh	PF01180.21	gi|408405564|ref|YP_006863547.1|	-	7.3e-38	130.5	0.0	8.4e-38	130.3	0.0	1.0	1	0	0	1	1	1	1	Dihydroorotate	dehydrogenase
FMN_dh	PF01070.18	gi|408405564|ref|YP_006863547.1|	-	0.021	13.9	0.0	0.031	13.3	0.0	1.2	1	0	0	1	1	1	0	FMN-dependent	dehydrogenase
DUF4891	PF16232.5	gi|408405565|ref|YP_006863548.1|	-	0.11	13.0	0.0	0.13	12.8	0.0	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4891)
MannoseP_isomer	PF01050.18	gi|408405566|ref|YP_006863549.1|	-	1.3e-23	83.6	0.1	1.5e-23	83.3	0.1	1.0	1	0	0	1	1	1	1	Mannose-6-phosphate	isomerase
Cupin_2	PF07883.11	gi|408405566|ref|YP_006863549.1|	-	3.7e-08	33.0	0.0	5.1e-08	32.5	0.0	1.2	1	0	0	1	1	1	1	Cupin	domain
FdtA	PF05523.11	gi|408405566|ref|YP_006863549.1|	-	0.0051	16.5	0.1	0.0077	16.0	0.1	1.4	1	1	0	1	1	1	1	WxcM-like,	C-terminal
Cupin_1	PF00190.22	gi|408405566|ref|YP_006863549.1|	-	0.0058	16.2	0.0	0.0073	15.9	0.0	1.2	1	0	0	1	1	1	1	Cupin
Cupin_7	PF12973.7	gi|408405566|ref|YP_006863549.1|	-	0.0098	15.8	0.0	0.014	15.3	0.0	1.2	1	0	0	1	1	1	1	ChrR	Cupin-like	domain
AraC_binding	PF02311.19	gi|408405566|ref|YP_006863549.1|	-	0.013	15.4	0.0	0.021	14.7	0.0	1.4	1	1	0	1	1	1	0	AraC-like	ligand	binding	domain
Pirin_C_2	PF17954.1	gi|408405566|ref|YP_006863549.1|	-	0.047	13.9	0.0	0.065	13.4	0.0	1.2	1	0	0	1	1	1	0	Quercetinase	C-terminal	cupin	domain
Ppnp	PF06865.11	gi|408405566|ref|YP_006863549.1|	-	0.055	13.9	0.0	0.067	13.6	0.0	1.2	1	0	0	1	1	1	0	Pyrimidine/purine	nucleoside	phosphorylase
DUF4384	PF14326.6	gi|408405566|ref|YP_006863549.1|	-	0.1	12.7	0.0	0.17	12.0	0.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4384)
DUF4866	PF16160.5	gi|408405567|ref|YP_006863550.1|	-	0.065	12.6	0.0	0.077	12.3	0.0	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4866)
PQ-loop	PF04193.14	gi|408405568|ref|YP_006863551.1|	-	3.5e-11	42.7	0.3	5.5e-11	42.1	0.1	1.4	1	1	0	1	1	1	1	PQ	loop	repeat
MtN3_slv	PF03083.16	gi|408405568|ref|YP_006863551.1|	-	3.6e-08	33.3	2.4	4e-08	33.2	2.4	1.0	1	0	0	1	1	1	1	Sugar	efflux	transporter	for	intercellular	exchange
LAB_N	PF07578.11	gi|408405568|ref|YP_006863551.1|	-	0.00012	22.1	0.6	0.00017	21.6	0.6	1.3	1	0	0	1	1	1	1	Lipid	A	Biosynthesis	N-terminal	domain
Rod_cone_degen	PF15201.6	gi|408405569|ref|YP_006863552.1|	-	0.14	12.3	0.0	0.18	11.9	0.0	1.2	1	0	0	1	1	1	0	Progressive	rod-cone	degeneration
Topo-VIb_trans	PF09239.11	gi|408405570|ref|YP_006863553.1|	-	1.2e-33	116.2	0.6	4.5e-31	107.8	0.2	2.9	2	1	0	2	2	2	1	Topoisomerase	VI	B	subunit,	transducer
HATPase_c	PF02518.26	gi|408405570|ref|YP_006863553.1|	-	2.1e-10	41.1	0.0	9.5e-10	39.0	0.0	2.2	2	0	0	2	2	2	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HATPase_c_3	PF13589.6	gi|408405570|ref|YP_006863553.1|	-	2.4e-07	30.7	0.0	9.6e-07	28.7	0.0	2.1	2	0	0	2	2	2	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
DUF2653	PF10850.8	gi|408405570|ref|YP_006863553.1|	-	0.079	13.2	0.0	0.35	11.1	0.0	2.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2653)
TP6A_N	PF04406.14	gi|408405571|ref|YP_006863554.1|	-	1.9e-13	50.2	0.0	3.3e-13	49.4	0.0	1.4	1	0	0	1	1	1	1	Type	IIB	DNA	topoisomerase
MEDS	PF14417.6	gi|408405572|ref|YP_006863555.1|	-	3.4e-13	49.7	0.0	8.5e-13	48.4	0.0	1.6	1	1	1	2	2	2	1	MEDS:	MEthanogen/methylotroph,	DcmR	Sensory	domain
Kelch_2	PF07646.15	gi|408405573|ref|YP_006863556.1|	-	0.0031	17.4	0.2	0.94	9.6	0.0	2.9	2	1	0	2	2	2	2	Kelch	motif
HCBP_related	PF06594.11	gi|408405573|ref|YP_006863556.1|	-	0.022	14.7	0.3	6.5	6.8	0.0	2.4	2	0	0	2	2	2	0	Haemolysin-type	calcium	binding	protein	related	domain
UPF0086	PF01868.16	gi|408405573|ref|YP_006863556.1|	-	0.073	13.0	0.0	2.3	8.2	0.0	2.1	2	0	0	2	2	2	0	Domain	of	unknown	function	UPF0086
DUF1697	PF08002.11	gi|408405575|ref|YP_006863558.1|	-	0.0022	18.5	0.0	0.003	18.0	0.0	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1697)
Lactamase_B	PF00753.27	gi|408405576|ref|YP_006863559.1|	-	1e-11	45.2	0.7	4.1e-11	43.3	0.7	2.1	1	1	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Lactamase_B_2	PF12706.7	gi|408405576|ref|YP_006863559.1|	-	7.3e-08	32.2	0.1	1.4e-07	31.2	0.1	1.5	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
DUF45	PF01863.17	gi|408405577|ref|YP_006863560.1|	-	7.2e-54	183.0	1.0	8.3e-54	182.8	1.0	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF45
WLM	PF08325.10	gi|408405577|ref|YP_006863560.1|	-	0.0024	18.0	0.2	0.0047	17.0	0.2	1.4	1	0	0	1	1	1	1	WLM	domain
TyrRSs_C	PF16714.5	gi|408405577|ref|YP_006863560.1|	-	0.12	12.2	0.1	0.3	10.9	0.0	1.7	2	0	0	2	2	2	0	Tyrosyl-tRNA	synthetase	C-terminal	domain
DUF2171	PF09939.9	gi|408405578|ref|YP_006863561.1|	-	2e-14	53.6	0.5	5.3e-05	23.4	0.0	3.3	3	0	0	3	3	3	3	Uncharacterized	protein	conserved	in	bacteria	(DUF2171)
bPH_2	PF03703.14	gi|408405578|ref|YP_006863561.1|	-	0.00057	20.0	0.0	0.97	9.7	0.0	2.8	3	0	0	3	3	3	2	Bacterial	PH	domain
PRC	PF05239.16	gi|408405578|ref|YP_006863561.1|	-	0.064	13.3	3.7	14	5.8	0.1	3.5	3	0	0	3	3	3	0	PRC-barrel	domain
Myb_DNA-bind_7	PF15963.5	gi|408405578|ref|YP_006863561.1|	-	0.073	13.0	1.2	1.7	8.6	0.0	2.9	3	0	0	3	3	3	0	Myb	DNA-binding	like
Lipase_C	PF18067.1	gi|408405578|ref|YP_006863561.1|	-	0.14	12.8	0.1	19	5.9	0.0	3.1	3	0	0	3	3	3	0	Lipase	C-terminal	domain
tRNA-synt_1b	PF00579.25	gi|408405580|ref|YP_006863563.1|	-	3.6e-42	144.7	0.0	8.3e-42	143.5	0.0	1.5	1	1	0	1	1	1	1	tRNA	synthetases	class	I	(W	and	Y)
Mannosyl_trans2	PF04188.13	gi|408405582|ref|YP_006863565.1|	-	0.036	13.4	0.2	0.036	13.4	0.2	1.0	1	0	0	1	1	1	0	Mannosyltransferase	(PIG-V)
MFS_1	PF07690.16	gi|408405583|ref|YP_006863566.1|	-	0.0078	15.2	7.3	0.0092	14.9	7.3	1.0	1	0	0	1	1	1	1	Major	Facilitator	Superfamily
HTH_AsnC-type	PF13404.6	gi|408405585|ref|YP_006863568.1|	-	1.8e-15	56.5	0.1	4.2e-15	55.3	0.1	1.7	2	0	0	2	2	2	1	AsnC-type	helix-turn-helix	domain
HTH_24	PF13412.6	gi|408405585|ref|YP_006863568.1|	-	9.6e-15	53.9	0.6	1.5e-14	53.2	0.1	1.6	2	0	0	2	2	1	1	Winged	helix-turn-helix	DNA-binding
AsnC_trans_reg	PF01037.21	gi|408405585|ref|YP_006863568.1|	-	3.2e-12	46.2	0.1	5.2e-12	45.6	0.1	1.3	1	0	0	1	1	1	1	Lrp/AsnC	ligand	binding	domain
NapD	PF03927.13	gi|408405585|ref|YP_006863568.1|	-	1.9e-05	24.6	2.9	3.8e-05	23.7	0.5	2.0	2	0	0	2	2	2	1	NapD	protein
MarR_2	PF12802.7	gi|408405585|ref|YP_006863568.1|	-	0.00016	21.5	0.2	0.00043	20.1	0.1	1.8	1	1	1	2	2	2	1	MarR	family
HTH_5	PF01022.20	gi|408405585|ref|YP_006863568.1|	-	0.0003	20.6	0.0	0.0013	18.5	0.0	2.1	3	0	0	3	3	3	1	Bacterial	regulatory	protein,	arsR	family
TrmB	PF01978.19	gi|408405585|ref|YP_006863568.1|	-	0.00059	19.7	0.3	0.0098	15.8	0.0	2.2	1	1	1	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_IclR	PF09339.10	gi|408405585|ref|YP_006863568.1|	-	0.00065	19.4	0.0	0.0012	18.6	0.0	1.4	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
HTH_11	PF08279.12	gi|408405585|ref|YP_006863568.1|	-	0.0022	17.9	0.1	0.0062	16.5	0.1	1.8	1	0	0	1	1	1	1	HTH	domain
HTH_Tnp_ISL3	PF13542.6	gi|408405585|ref|YP_006863568.1|	-	0.0031	16.9	0.0	0.0093	15.4	0.0	1.8	2	0	0	2	2	2	1	Helix-turn-helix	domain	of	transposase	family	ISL3
MarR	PF01047.22	gi|408405585|ref|YP_006863568.1|	-	0.0033	17.3	0.3	0.014	15.3	0.0	2.0	2	0	0	2	2	2	1	MarR	family
Sigma70_r4	PF04545.16	gi|408405585|ref|YP_006863568.1|	-	0.017	14.7	0.1	0.027	14.0	0.1	1.4	1	0	0	1	1	1	0	Sigma-70,	region	4
DUF2774	PF11242.8	gi|408405585|ref|YP_006863568.1|	-	0.019	15.2	0.3	0.055	13.7	0.0	1.8	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2774)
HTH_20	PF12840.7	gi|408405585|ref|YP_006863568.1|	-	0.03	14.4	0.0	0.082	13.0	0.0	1.7	2	0	0	2	2	1	0	Helix-turn-helix	domain
HTH_DeoR	PF08220.12	gi|408405585|ref|YP_006863568.1|	-	0.032	14.0	0.1	0.066	13.0	0.1	1.5	1	0	0	1	1	1	0	DeoR-like	helix-turn-helix	domain
Mga	PF05043.13	gi|408405585|ref|YP_006863568.1|	-	0.042	14.4	0.0	0.11	13.1	0.0	1.7	2	0	0	2	2	2	0	Mga	helix-turn-helix	domain
FaeA	PF04703.12	gi|408405585|ref|YP_006863568.1|	-	0.046	14.1	0.0	0.086	13.2	0.0	1.5	1	0	0	1	1	1	0	FaeA-like	protein
HTH_Crp_2	PF13545.6	gi|408405585|ref|YP_006863568.1|	-	0.062	13.3	0.2	0.2	11.7	0.1	1.8	2	0	0	2	2	2	0	Crp-like	helix-turn-helix	domain
RP-C	PF03428.13	gi|408405585|ref|YP_006863568.1|	-	0.066	12.9	0.0	0.11	12.1	0.0	1.3	1	0	0	1	1	1	0	Replication	protein	C	N-terminal	domain
GYD	PF08734.11	gi|408405585|ref|YP_006863568.1|	-	0.071	13.1	0.1	0.18	11.8	0.0	1.7	1	1	0	1	1	1	0	GYD	domain
DUF742	PF05331.11	gi|408405585|ref|YP_006863568.1|	-	0.081	12.7	0.1	0.18	11.6	0.0	1.6	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF742)
LexA_DNA_bind	PF01726.16	gi|408405585|ref|YP_006863568.1|	-	0.097	12.5	0.2	1.7	8.5	0.0	2.6	3	0	0	3	3	3	0	LexA	DNA	binding	domain
HTH_47	PF16221.5	gi|408405585|ref|YP_006863568.1|	-	0.098	12.2	1.0	0.13	11.8	0.0	1.8	3	0	0	3	3	3	0	winged	helix-turn-helix
Sigma70_r4_2	PF08281.12	gi|408405585|ref|YP_006863568.1|	-	0.12	12.1	0.0	0.3	10.8	0.0	1.7	1	0	0	1	1	1	0	Sigma-70,	region	4
HTH_36	PF13730.6	gi|408405585|ref|YP_006863568.1|	-	0.12	12.4	0.0	0.59	10.1	0.0	2.1	2	0	0	2	2	2	0	Helix-turn-helix	domain
MIase	PF02426.16	gi|408405585|ref|YP_006863568.1|	-	0.12	12.5	0.0	0.64	10.2	0.0	1.9	1	1	1	2	2	2	0	Muconolactone	delta-isomerase
Aminotran_3	PF00202.21	gi|408405586|ref|YP_006863569.1|	-	2.4e-112	375.6	0.0	3.3e-112	375.1	0.0	1.2	1	0	0	1	1	1	1	Aminotransferase	class-III
Aminotran_1_2	PF00155.21	gi|408405586|ref|YP_006863569.1|	-	0.00017	20.9	0.0	0.00033	20.0	0.0	1.4	1	0	0	1	1	1	1	Aminotransferase	class	I	and	II
Aminotran_5	PF00266.19	gi|408405586|ref|YP_006863569.1|	-	0.15	11.0	0.0	0.23	10.4	0.0	1.2	1	0	0	1	1	1	0	Aminotransferase	class-V
AA_kinase	PF00696.28	gi|408405587|ref|YP_006863570.1|	-	8.6e-39	133.6	5.2	9.8e-39	133.4	5.2	1.0	1	0	0	1	1	1	1	Amino	acid	kinase	family
Semialdhyde_dh	PF01118.24	gi|408405588|ref|YP_006863571.1|	-	1.5e-37	128.7	0.0	2.9e-37	127.8	0.0	1.5	1	0	0	1	1	1	1	Semialdehyde	dehydrogenase,	NAD	binding	domain
Semialdhyde_dhC	PF02774.18	gi|408405588|ref|YP_006863571.1|	-	4.3e-22	79.1	0.0	6e-22	78.6	0.0	1.2	1	0	0	1	1	1	1	Semialdehyde	dehydrogenase,	dimerisation	domain
F420_oxidored	PF03807.17	gi|408405588|ref|YP_006863571.1|	-	0.00029	21.3	0.0	0.00063	20.3	0.0	1.6	1	0	0	1	1	1	1	NADP	oxidoreductase	coenzyme	F420-dependent
DapB_N	PF01113.20	gi|408405588|ref|YP_006863571.1|	-	0.0022	18.1	0.0	0.0046	17.1	0.0	1.6	1	0	0	1	1	1	1	Dihydrodipicolinate	reductase,	N-terminus
GFO_IDH_MocA	PF01408.22	gi|408405588|ref|YP_006863571.1|	-	0.013	16.3	0.0	0.025	15.4	0.0	1.5	1	0	0	1	1	1	0	Oxidoreductase	family,	NAD-binding	Rossmann	fold
Sacchrp_dh_NADP	PF03435.18	gi|408405588|ref|YP_006863571.1|	-	0.034	14.4	0.0	0.065	13.5	0.0	1.5	1	0	0	1	1	1	0	Saccharopine	dehydrogenase	NADP	binding	domain
NAD_binding_10	PF13460.6	gi|408405588|ref|YP_006863571.1|	-	0.035	14.0	0.0	0.082	12.8	0.0	1.6	1	0	0	1	1	1	0	NAD(P)H-binding
RimK	PF08443.11	gi|408405589|ref|YP_006863572.1|	-	2.2e-38	131.8	0.0	3.2e-38	131.2	0.0	1.2	1	0	0	1	1	1	1	RimK-like	ATP-grasp	domain
GSH-S_ATP	PF02955.16	gi|408405589|ref|YP_006863572.1|	-	1.8e-11	43.7	0.0	2.7e-11	43.2	0.0	1.2	1	0	0	1	1	1	1	Prokaryotic	glutathione	synthetase,	ATP-grasp	domain
ATP-grasp_3	PF02655.14	gi|408405589|ref|YP_006863572.1|	-	1.4e-08	35.0	0.0	3.7e-08	33.6	0.0	1.6	2	0	0	2	2	2	1	ATP-grasp	domain
ATPgrasp_ST	PF14397.6	gi|408405589|ref|YP_006863572.1|	-	2.4e-07	30.3	0.0	0.0095	15.2	0.0	2.8	2	1	1	3	3	3	2	Sugar-transfer	associated	ATP-grasp
ATP-grasp	PF02222.22	gi|408405589|ref|YP_006863572.1|	-	6.7e-07	29.0	0.0	1.5e-06	27.9	0.0	1.5	1	1	0	1	1	1	1	ATP-grasp	domain
ATPgrasp_YheCD	PF14398.6	gi|408405589|ref|YP_006863572.1|	-	3.9e-06	26.3	0.0	0.18	11.0	0.2	3.1	1	1	1	2	2	2	2	YheC/D	like	ATP-grasp
CPSase_L_D2	PF02786.17	gi|408405589|ref|YP_006863572.1|	-	0.0011	18.5	0.1	0.0039	16.7	0.0	1.9	2	1	0	2	2	2	1	Carbamoyl-phosphate	synthase	L	chain,	ATP	binding	domain
ATP-grasp_5	PF13549.6	gi|408405589|ref|YP_006863572.1|	-	0.0058	16.1	0.0	0.022	14.2	0.0	1.9	2	0	0	2	2	2	1	ATP-grasp	domain
zinc_ribbon_4	PF13717.6	gi|408405590|ref|YP_006863573.1|	-	4.7e-05	23.2	0.2	0.12	12.3	0.0	2.1	2	0	0	2	2	2	2	zinc-ribbon	domain
HypA	PF01155.19	gi|408405590|ref|YP_006863573.1|	-	0.00028	20.9	0.6	0.00029	20.8	0.6	1.0	1	0	0	1	1	1	1	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
zf-IS66	PF13005.7	gi|408405590|ref|YP_006863573.1|	-	0.003	17.9	1.8	0.22	12.0	0.1	2.2	2	0	0	2	2	2	1	zinc-finger	binding	domain	of	transposase	IS66
Zn-ribbon_8	PF09723.10	gi|408405590|ref|YP_006863573.1|	-	0.0038	17.3	2.5	0.0086	16.2	2.4	1.6	1	1	0	1	1	1	1	Zinc	ribbon	domain
zf-ribbon_3	PF13248.6	gi|408405590|ref|YP_006863573.1|	-	0.005	16.2	2.8	1.2	8.7	0.1	2.2	2	0	0	2	2	2	2	zinc-ribbon	domain
DZR	PF12773.7	gi|408405590|ref|YP_006863573.1|	-	0.0066	16.4	0.4	0.009	16.0	0.4	1.2	1	0	0	1	1	1	1	Double	zinc	ribbon
zf-RING_7	PF02591.15	gi|408405590|ref|YP_006863573.1|	-	0.007	16.5	2.9	0.11	12.7	0.3	2.4	2	0	0	2	2	2	1	C4-type	zinc	ribbon	domain
zf-C4_Topoisom	PF01396.19	gi|408405590|ref|YP_006863573.1|	-	0.0074	16.0	1.5	1.1	9.2	0.1	2.1	2	0	0	2	2	2	1	Topoisomerase	DNA	binding	C4	zinc	finger
zf_UBZ	PF18439.1	gi|408405590|ref|YP_006863573.1|	-	0.0084	15.7	1.4	0.68	9.6	0.2	2.3	2	0	0	2	2	2	1	Ubiquitin-Binding	Zinc	Finger
zinc_ribbon_5	PF13719.6	gi|408405590|ref|YP_006863573.1|	-	0.015	15.0	0.5	0.5	10.2	0.0	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
Prok-RING_1	PF14446.6	gi|408405590|ref|YP_006863573.1|	-	0.016	15.2	7.0	0.082	12.8	7.0	1.9	1	1	0	1	1	1	0	Prokaryotic	RING	finger	family	1
zf-HYPF	PF07503.12	gi|408405590|ref|YP_006863573.1|	-	0.022	14.5	1.1	1.3	8.8	0.1	2.0	2	0	0	2	2	2	0	HypF	finger
DUF1451	PF07295.11	gi|408405590|ref|YP_006863573.1|	-	0.028	14.5	0.4	0.036	14.1	0.4	1.1	1	0	0	1	1	1	0	Zinc-ribbon	containing	domain
Lar_restr_allev	PF14354.6	gi|408405590|ref|YP_006863573.1|	-	0.036	14.4	2.0	0.95	9.9	2.0	2.1	1	1	0	1	1	1	0	Restriction	alleviation	protein	Lar
YhfH	PF14149.6	gi|408405590|ref|YP_006863573.1|	-	0.046	13.7	2.1	1.6	8.8	0.2	2.2	2	0	0	2	2	2	0	YhfH-like	protein
DNA_RNApol_7kD	PF03604.13	gi|408405590|ref|YP_006863573.1|	-	0.046	13.4	5.8	2.1	8.1	4.7	2.9	1	1	1	3	3	3	0	DNA	directed	RNA	polymerase,	7	kDa	subunit
Zn_ribbon_recom	PF13408.6	gi|408405590|ref|YP_006863573.1|	-	0.056	14.0	0.0	4.2	8.0	0.0	2.1	2	0	0	2	2	2	0	Recombinase	zinc	beta	ribbon	domain
zinc_ribbon_9	PF14369.6	gi|408405590|ref|YP_006863573.1|	-	0.057	13.7	2.0	0.12	12.7	2.0	1.5	1	1	0	1	1	1	0	zinc-ribbon
OrfB_Zn_ribbon	PF07282.11	gi|408405590|ref|YP_006863573.1|	-	0.061	13.2	0.3	0.079	12.9	0.3	1.3	1	0	0	1	1	1	0	Putative	transposase	DNA-binding	domain
zinc-ribbons_6	PF07191.12	gi|408405590|ref|YP_006863573.1|	-	0.067	13.2	0.4	0.14	12.2	0.4	1.6	1	1	0	1	1	1	0	zinc-ribbons
zf_Rg	PF17915.1	gi|408405590|ref|YP_006863573.1|	-	0.074	12.5	0.6	0.75	9.3	0.1	2.1	2	0	0	2	2	2	0	Reverse	gyrase	zinc	finger
A2L_zn_ribbon	PF08792.10	gi|408405590|ref|YP_006863573.1|	-	0.095	12.4	1.8	5.4	6.9	0.1	2.1	2	0	0	2	2	2	0	A2L	zinc	ribbon	domain
zinc_ribbon_2	PF13240.6	gi|408405590|ref|YP_006863573.1|	-	0.12	12.2	2.5	2.3	8.0	2.5	2.2	1	1	0	1	1	1	0	zinc-ribbon	domain
CpXC	PF14353.6	gi|408405590|ref|YP_006863573.1|	-	0.2	11.7	1.2	15	5.7	0.1	2.1	1	1	1	2	2	2	0	CpXC	protein
DUF983	PF06170.12	gi|408405590|ref|YP_006863573.1|	-	0.22	12.0	2.3	8.8	6.8	0.2	2.1	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF983)
RNA_POL_M_15KD	PF02150.16	gi|408405590|ref|YP_006863573.1|	-	0.26	11.2	2.4	1.9	8.4	2.5	2.0	1	1	1	2	2	2	0	RNA	polymerases	M/15	Kd	subunit
Ribosomal_S27e	PF01667.17	gi|408405590|ref|YP_006863573.1|	-	0.27	11.0	2.4	6.8	6.5	0.2	1.9	1	1	0	2	2	2	0	Ribosomal	protein	S27
DUF1272	PF06906.11	gi|408405590|ref|YP_006863573.1|	-	0.32	11.1	3.9	3	8.0	0.6	2.1	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF1272)
zf-Mss51	PF13824.6	gi|408405590|ref|YP_006863573.1|	-	2.7	8.2	4.9	16	5.7	0.2	2.2	1	1	1	2	2	2	0	Zinc-finger	of	mitochondrial	splicing	suppressor	51
Arginosuc_synth	PF00764.19	gi|408405591|ref|YP_006863574.1|	-	3.9e-161	536.7	0.7	4.5e-161	536.5	0.7	1.0	1	0	0	1	1	1	1	Arginosuccinate	synthase
QueC	PF06508.13	gi|408405591|ref|YP_006863574.1|	-	0.003	17.1	0.3	0.01	15.4	0.0	2.0	3	0	0	3	3	3	1	Queuosine	biosynthesis	protein	QueC
Asn_synthase	PF00733.21	gi|408405591|ref|YP_006863574.1|	-	0.004	16.9	0.0	0.0063	16.2	0.0	1.3	1	0	0	1	1	1	1	Asparagine	synthase
Phenyl_P_gamma	PF09662.10	gi|408405591|ref|YP_006863574.1|	-	0.03	14.5	0.0	0.13	12.4	0.0	2.0	2	0	0	2	2	2	0	Phenylphosphate	carboxylase	gamma	subunit	(Phenyl_P_gamma)
ACT_7	PF13840.6	gi|408405592|ref|YP_006863575.1|	-	3.8e-07	29.8	0.0	1e-06	28.4	0.0	1.8	1	0	0	1	1	1	1	ACT	domain
Spermine_synth	PF01564.17	gi|408405593|ref|YP_006863576.1|	-	2.7e-09	36.7	0.0	4.8e-09	35.9	0.0	1.3	1	0	0	1	1	1	1	Spermine/spermidine	synthase	domain
Methyltransf_25	PF13649.6	gi|408405593|ref|YP_006863576.1|	-	0.026	15.2	0.0	0.065	13.9	0.0	1.7	1	0	0	1	1	1	0	Methyltransferase	domain
B12-binding_2	PF02607.17	gi|408405594|ref|YP_006863577.1|	-	6.8e-08	32.8	0.2	1.8e-07	31.5	0.1	1.8	2	0	0	2	2	2	1	B12	binding	domain
HTH_11	PF08279.12	gi|408405594|ref|YP_006863577.1|	-	9.6e-06	25.5	0.1	1.7e-05	24.7	0.1	1.4	1	0	0	1	1	1	1	HTH	domain
HTH_24	PF13412.6	gi|408405594|ref|YP_006863577.1|	-	1.8e-05	24.2	0.1	3.4e-05	23.3	0.1	1.5	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
MarR	PF01047.22	gi|408405594|ref|YP_006863577.1|	-	0.0037	17.2	0.0	0.0086	16.0	0.0	1.6	1	0	0	1	1	1	1	MarR	family
DUF2250	PF10007.9	gi|408405594|ref|YP_006863577.1|	-	0.0062	16.6	0.1	0.013	15.6	0.1	1.6	1	0	0	1	1	1	1	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
HTH_5	PF01022.20	gi|408405594|ref|YP_006863577.1|	-	0.0074	16.1	0.0	0.016	15.1	0.0	1.6	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_IclR	PF09339.10	gi|408405594|ref|YP_006863577.1|	-	0.011	15.6	0.0	0.028	14.2	0.0	1.7	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
Mnd1	PF03962.15	gi|408405594|ref|YP_006863577.1|	-	0.014	15.6	0.0	0.032	14.5	0.0	1.6	1	0	0	1	1	1	0	Mnd1	HTH	domain
GntR	PF00392.21	gi|408405594|ref|YP_006863577.1|	-	0.017	14.8	0.0	0.076	12.7	0.0	2.0	2	0	0	2	2	2	0	Bacterial	regulatory	proteins,	gntR	family
MarR_2	PF12802.7	gi|408405594|ref|YP_006863577.1|	-	0.031	14.2	0.0	0.096	12.6	0.0	1.8	2	0	0	2	2	2	0	MarR	family
Dimerisation2	PF16864.5	gi|408405594|ref|YP_006863577.1|	-	0.057	13.4	0.0	0.11	12.5	0.0	1.4	1	0	0	1	1	1	0	Dimerisation	domain
TMCCDC2	PF15844.5	gi|408405595|ref|YP_006863578.1|	-	0.21	11.5	4.0	0.14	12.1	2.0	1.8	1	1	1	2	2	2	0	Transmembrane	and	coiled-coil	domain-containing	protein	2
Yip1	PF04893.17	gi|408405595|ref|YP_006863578.1|	-	0.37	10.5	32.5	0.19	11.4	29.1	1.8	1	1	1	2	2	2	0	Yip1	domain
Dodecin	PF07311.12	gi|408405596|ref|YP_006863579.1|	-	2.6e-23	82.0	3.0	2.9e-23	81.9	3.0	1.0	1	0	0	1	1	1	1	Dodecin
Mn_catalase	PF05067.12	gi|408405598|ref|YP_006863581.1|	-	1.2e-21	77.0	0.0	1.5e-21	76.6	0.0	1.1	1	0	0	1	1	1	1	Manganese	containing	catalase
Mn_catalase	PF05067.12	gi|408405599|ref|YP_006863582.1|	-	0.00087	18.3	0.0	0.0011	18.0	0.0	1.1	1	0	0	1	1	1	1	Manganese	containing	catalase
ADH_zinc_N	PF00107.26	gi|408405600|ref|YP_006863583.1|	-	1.3e-29	102.9	0.4	2.1e-29	102.1	0.4	1.4	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
ADH_N	PF08240.12	gi|408405600|ref|YP_006863583.1|	-	1e-25	89.7	0.0	1.9e-25	88.9	0.0	1.5	1	0	0	1	1	1	1	Alcohol	dehydrogenase	GroES-like	domain
ADH_zinc_N_2	PF13602.6	gi|408405600|ref|YP_006863583.1|	-	8.8e-19	68.9	0.0	1.6e-18	68.0	0.0	1.4	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
Methyltransf_16	PF10294.9	gi|408405600|ref|YP_006863583.1|	-	0.0033	17.2	0.3	0.0051	16.6	0.3	1.3	1	0	0	1	1	1	1	Lysine	methyltransferase
ACP_syn_III_C	PF08541.10	gi|408405600|ref|YP_006863583.1|	-	0.045	13.9	0.1	0.13	12.5	0.1	1.8	1	0	0	1	1	1	0	3-Oxoacyl-[acyl-carrier-protein	(ACP)]	synthase	III	C	terminal
TrkA_N	PF02254.18	gi|408405600|ref|YP_006863583.1|	-	0.15	12.4	0.1	0.49	10.7	0.0	1.9	3	0	0	3	3	3	0	TrkA-N	domain
Pro_CA	PF00484.19	gi|408405601|ref|YP_006863584.1|	-	0.14	12.5	2.6	0.38	11.1	2.6	1.8	1	1	0	1	1	1	0	Carbonic	anhydrase
Kelch_2	PF07646.15	gi|408405602|ref|YP_006863585.1|	-	0.09	12.8	0.0	0.99	9.5	0.0	2.4	2	1	1	3	3	3	0	Kelch	motif
PH_2	PF08458.10	gi|408405602|ref|YP_006863585.1|	-	0.22	11.9	1.0	20	5.6	0.3	2.8	2	1	1	3	3	3	0	Plant	pleckstrin	homology-like	region
CopG_antitoxin	PF12441.8	gi|408405603|ref|YP_006863586.1|	-	0.00072	20.0	0.5	0.0018	18.8	0.1	1.9	2	0	0	2	2	2	1	CopG	antitoxin	of	type	II	toxin-antitoxin	system
YtxC	PF08812.11	gi|408405603|ref|YP_006863586.1|	-	0.02	14.5	1.9	0.026	14.1	1.1	1.4	1	1	0	1	1	1	0	YtxC-like	family
Ferritin	PF00210.24	gi|408405605|ref|YP_006863588.1|	-	0.00025	21.0	0.1	0.00029	20.8	0.1	1.0	1	0	0	1	1	1	1	Ferritin-like	domain
Com_YlbF	PF06133.11	gi|408405605|ref|YP_006863588.1|	-	0.0027	18.3	0.9	0.0029	18.2	0.9	1.1	1	0	0	1	1	1	1	Control	of	competence	regulator	ComK,	YlbF/YmcA
eIF-1a	PF01176.19	gi|408405606|ref|YP_006863589.1|	-	8.6e-20	70.3	1.0	1e-19	70.1	1.0	1.1	1	0	0	1	1	1	1	Translation	initiation	factor	1A	/	IF-1
Myosin_N	PF02736.19	gi|408405606|ref|YP_006863589.1|	-	9e-05	22.2	0.3	0.0012	18.6	0.1	2.1	2	0	0	2	2	2	1	Myosin	N-terminal	SH3-like	domain
RsgA_N	PF16745.5	gi|408405606|ref|YP_006863589.1|	-	0.0018	18.0	0.3	0.0027	17.4	0.3	1.4	1	0	0	1	1	1	1	RsgA	N-terminal	domain
Prot_ATP_ID_OB	PF16450.5	gi|408405606|ref|YP_006863589.1|	-	0.01	15.7	0.0	0.016	15.2	0.0	1.2	1	0	0	1	1	1	0	Proteasomal	ATPase	OB	C-terminal	domain
iPGM_N	PF06415.13	gi|408405606|ref|YP_006863589.1|	-	0.17	11.4	0.0	0.19	11.2	0.0	1.1	1	0	0	1	1	1	0	BPG-independent	PGAM	N-terminus	(iPGM_N)
zf-C2H2	PF00096.26	gi|408405607|ref|YP_006863590.1|	-	9.5e-05	22.6	1.4	0.00012	22.3	1.4	1.2	1	0	0	1	1	1	1	Zinc	finger,	C2H2	type
zf-H2C2_2	PF13465.6	gi|408405607|ref|YP_006863590.1|	-	0.0042	17.5	3.4	0.17	12.4	0.1	2.1	2	0	0	2	2	2	2	Zinc-finger	double	domain
zf-C2H2_4	PF13894.6	gi|408405607|ref|YP_006863590.1|	-	0.0089	16.8	1.9	0.013	16.3	1.9	1.3	1	0	0	1	1	1	1	C2H2-type	zinc	finger
zf-C2HC_2	PF13913.6	gi|408405607|ref|YP_006863590.1|	-	0.016	15.1	0.2	0.032	14.1	0.2	1.5	1	0	0	1	1	1	0	zinc-finger	of	a	C2HC-type
zinc_ribbon_4	PF13717.6	gi|408405607|ref|YP_006863590.1|	-	0.018	14.9	0.6	0.35	10.8	0.4	2.1	2	0	0	2	2	2	0	zinc-ribbon	domain
zf_UBZ	PF18439.1	gi|408405607|ref|YP_006863590.1|	-	0.019	14.6	0.9	0.026	14.1	0.4	1.6	1	1	0	1	1	1	0	Ubiquitin-Binding	Zinc	Finger
DNA_alkylation	PF08713.11	gi|408405608|ref|YP_006863591.1|	-	1.3e-10	41.3	0.0	1.5e-10	41.1	0.0	1.1	1	0	0	1	1	1	1	DNA	alkylation	repair	enzyme
Toprim_2	PF13155.6	gi|408405608|ref|YP_006863591.1|	-	0.0033	17.8	0.0	0.0047	17.3	0.0	1.2	1	0	0	1	1	1	1	Toprim-like
DNA_alkylation	PF08713.11	gi|408405609|ref|YP_006863592.1|	-	6.9e-36	124.0	0.9	8.4e-36	123.7	0.9	1.0	1	0	0	1	1	1	1	DNA	alkylation	repair	enzyme
MTTB	PF06253.11	gi|408405609|ref|YP_006863592.1|	-	0.12	10.4	0.1	1.2	7.0	0.0	1.9	1	1	1	2	2	2	0	Trimethylamine	methyltransferase	(MTTB)
Ribosomal_60s	PF00428.19	gi|408405610|ref|YP_006863593.1|	-	6.1e-18	65.2	17.4	7.1e-18	65.0	17.4	1.0	1	0	0	1	1	1	1	60s	Acidic	ribosomal	protein
PfkB	PF00294.24	gi|408405611|ref|YP_006863594.1|	-	7.2e-17	61.6	0.8	9.1e-17	61.3	0.8	1.1	1	0	0	1	1	1	1	pfkB	family	carbohydrate	kinase
ADP_PFK_GK	PF04587.15	gi|408405611|ref|YP_006863594.1|	-	0.0052	15.4	0.0	1.7	7.1	0.0	2.1	2	0	0	2	2	2	2	ADP-specific	Phosphofructokinase/Glucokinase	conserved	region
TPR_14	PF13428.6	gi|408405613|ref|YP_006863596.1|	-	0.14	13.1	0.0	0.38	11.7	0.0	1.8	2	0	0	2	2	2	0	Tetratricopeptide	repeat
MazG-like	PF12643.7	gi|408405615|ref|YP_006863598.1|	-	0.052	13.8	0.9	0.063	13.5	0.9	1.1	1	0	0	1	1	1	0	MazG-like	family
HTH_45	PF14947.6	gi|408405618|ref|YP_006863601.1|	-	1.1e-11	44.6	0.3	1.2e-11	44.4	0.3	1.0	1	0	0	1	1	1	1	Winged	helix-turn-helix
DUF4364	PF14277.6	gi|408405618|ref|YP_006863601.1|	-	0.00024	20.9	0.2	0.00027	20.7	0.2	1.0	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4364)
FokI_C	PF02980.16	gi|408405618|ref|YP_006863601.1|	-	0.098	12.7	0.7	5.6	7.0	0.1	2.1	1	1	1	2	2	2	0	Restriction	endonuclease	FokI,	catalytic	domain
Glyco_transf_4	PF13439.6	gi|408405621|ref|YP_006863604.1|	-	1.4e-07	31.6	0.1	1.3e-06	28.6	0.1	2.3	1	1	0	1	1	1	1	Glycosyltransferase	Family	4
Glyco_trans_1_4	PF13692.6	gi|408405621|ref|YP_006863604.1|	-	6.1e-05	23.5	0.0	0.00012	22.5	0.0	1.5	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_2	PF13524.6	gi|408405621|ref|YP_006863604.1|	-	0.00075	19.8	0.0	0.0017	18.7	0.0	1.6	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glycos_transf_1	PF00534.20	gi|408405621|ref|YP_006863604.1|	-	0.057	13.0	0.0	0.14	11.7	0.0	1.8	1	1	0	1	1	1	0	Glycosyl	transferases	group	1
VAPB_antitox	PF02697.14	gi|408405621|ref|YP_006863604.1|	-	0.062	14.1	0.2	0.97	10.3	0.0	2.5	2	0	0	2	2	2	0	Putative	antitoxin
Glyco_transf_5	PF08323.11	gi|408405621|ref|YP_006863604.1|	-	0.14	11.8	0.2	0.77	9.4	0.1	2.0	1	1	0	2	2	2	0	Starch	synthase	catalytic	domain
Glyco_trans_4_4	PF13579.6	gi|408405621|ref|YP_006863604.1|	-	0.16	12.4	0.0	0.37	11.2	0.0	1.8	1	1	0	1	1	1	0	Glycosyl	transferase	4-like	domain
Glycos_transf_1	PF00534.20	gi|408405622|ref|YP_006863605.1|	-	2.5e-18	66.2	0.0	3.8e-18	65.6	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.6	gi|408405622|ref|YP_006863605.1|	-	5.8e-08	33.2	0.0	1e-07	32.4	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_transf_4	PF13439.6	gi|408405622|ref|YP_006863605.1|	-	1.4e-05	25.2	0.0	2e-05	24.7	0.0	1.3	1	0	0	1	1	1	1	Glycosyltransferase	Family	4
ALG11_N	PF15924.5	gi|408405622|ref|YP_006863605.1|	-	0.01	15.9	0.5	0.048	13.7	0.4	2.2	2	1	0	2	2	2	1	ALG11	mannosyltransferase	N-terminus
ArsA_HSP20	PF17886.1	gi|408405623|ref|YP_006863606.1|	-	3.2e-10	39.4	0.0	4.8e-10	38.8	0.0	1.3	1	0	0	1	1	1	1	HSP20-like	domain	found	in	ArsA
HSP20	PF00011.21	gi|408405623|ref|YP_006863606.1|	-	7.7e-10	38.8	0.2	7e-08	32.5	0.2	2.3	1	1	0	1	1	1	1	Hsp20/alpha	crystallin	family
GvpH	PF05455.11	gi|408405623|ref|YP_006863606.1|	-	0.0067	16.5	0.0	0.018	15.1	0.0	1.6	2	0	0	2	2	2	1	GvpH
DnaJ_C	PF01556.18	gi|408405624|ref|YP_006863607.1|	-	1.4e-34	119.3	0.0	1.8e-34	118.9	0.0	1.2	1	0	0	1	1	1	1	DnaJ	C	terminal	domain
DnaJ	PF00226.31	gi|408405624|ref|YP_006863607.1|	-	1.1e-28	99.1	5.0	1.7e-28	98.5	5.0	1.3	1	0	0	1	1	1	1	DnaJ	domain
DnaJ_CXXCXGXG	PF00684.19	gi|408405624|ref|YP_006863607.1|	-	3e-11	43.5	16.9	5.1e-11	42.8	16.9	1.4	1	0	0	1	1	1	1	DnaJ	central	domain
Anti-TRAP	PF15777.5	gi|408405624|ref|YP_006863607.1|	-	0.3	11.1	14.8	0.65	10.0	2.0	2.7	2	0	0	2	2	2	0	Tryptophan	RNA-binding	attenuator	protein	inhibitory	protein
HSP70	PF00012.20	gi|408405625|ref|YP_006863608.1|	-	1.3e-215	717.2	17.6	3.4e-196	653.0	12.0	2.0	1	1	1	2	2	2	2	Hsp70	protein
MreB_Mbl	PF06723.13	gi|408405625|ref|YP_006863608.1|	-	2.3e-17	62.8	5.2	6.5e-17	61.3	5.2	1.8	1	1	0	1	1	1	1	MreB/Mbl	protein
FGGY_C	PF02782.16	gi|408405625|ref|YP_006863608.1|	-	5.2e-05	23.1	0.3	0.00011	22.0	0.3	1.6	1	0	0	1	1	1	1	FGGY	family	of	carbohydrate	kinases,	C-terminal	domain
StbA	PF06406.11	gi|408405625|ref|YP_006863608.1|	-	0.0029	16.9	0.2	0.0087	15.3	0.2	1.8	2	0	0	2	2	2	1	StbA	protein
Iron_permease	PF04120.12	gi|408405625|ref|YP_006863608.1|	-	0.014	15.1	0.2	0.92	9.3	0.1	2.7	2	0	0	2	2	2	0	Low	affinity	iron	permease
MHC_I_2	PF14586.6	gi|408405625|ref|YP_006863608.1|	-	0.095	12.6	0.0	0.21	11.4	0.0	1.5	1	0	0	1	1	1	0	Class	I	Histocompatibility	antigen,	NKG2D	ligand,	domains	1	and	2
eIF-4B	PF06273.11	gi|408405625|ref|YP_006863608.1|	-	0.2	10.7	6.2	0.32	10.0	6.2	1.3	1	0	0	1	1	1	0	Plant	specific	eukaryotic	initiation	factor	4B
GrpE	PF01025.19	gi|408405626|ref|YP_006863609.1|	-	7.7e-40	136.3	5.5	9.3e-40	136.0	5.5	1.1	1	0	0	1	1	1	1	GrpE
OmpH	PF03938.14	gi|408405626|ref|YP_006863609.1|	-	0.011	16.1	8.2	0.017	15.5	8.2	1.3	1	0	0	1	1	1	0	Outer	membrane	protein	(OmpH-like)
Golgin_A5	PF09787.9	gi|408405626|ref|YP_006863609.1|	-	0.02	14.4	3.6	0.02	14.4	3.6	1.2	1	0	0	1	1	1	0	Golgin	subfamily	A	member	5
AA_permease_N	PF08403.10	gi|408405626|ref|YP_006863609.1|	-	0.025	14.1	0.1	0.076	12.5	0.0	1.8	2	0	0	2	2	2	0	Amino	acid	permease	N-terminal
AMH_N	PF04709.12	gi|408405626|ref|YP_006863609.1|	-	0.1	11.5	2.5	0.14	11.0	2.5	1.1	1	0	0	1	1	1	0	Anti-Mullerian	hormone,	N	terminal	region
DUF1451	PF07295.11	gi|408405626|ref|YP_006863609.1|	-	0.12	12.4	3.2	0.23	11.5	3.2	1.4	1	0	0	1	1	1	0	Zinc-ribbon	containing	domain
VGCC_beta4Aa_N	PF12052.8	gi|408405626|ref|YP_006863609.1|	-	0.24	11.5	0.2	0.24	11.5	0.2	2.4	2	1	0	2	2	2	0	Voltage	gated	calcium	channel	subunit	beta	domain	4Aa	N	terminal
Rx_N	PF18052.1	gi|408405626|ref|YP_006863609.1|	-	0.39	11.0	4.9	0.21	11.9	1.7	2.3	3	1	0	3	3	3	0	Rx	N-terminal	domain
YabA	PF06156.13	gi|408405626|ref|YP_006863609.1|	-	0.86	10.3	3.7	1.7	9.3	3.7	1.6	1	1	0	1	1	1	0	Initiation	control	protein	YabA
HAUS-augmin3	PF14932.6	gi|408405626|ref|YP_006863609.1|	-	0.95	9.0	9.1	1.4	8.5	9.1	1.2	1	0	0	1	1	1	0	HAUS	augmin-like	complex	subunit	3
DUF883	PF05957.13	gi|408405626|ref|YP_006863609.1|	-	2.5	8.8	5.7	8.2	7.1	0.7	2.5	1	1	1	2	2	2	0	Bacterial	protein	of	unknown	function	(DUF883)
DUF4404	PF14357.6	gi|408405626|ref|YP_006863609.1|	-	3.3	8.4	7.8	2.1	9.0	3.4	2.7	2	1	1	3	3	3	0	Domain	of	unknown	function	(DUF4404)
HIP1_clath_bdg	PF16515.5	gi|408405626|ref|YP_006863609.1|	-	4.1	8.1	11.2	1.6	9.4	4.4	2.6	1	1	1	2	2	2	0	Clathrin-binding	domain	of	Huntingtin-interacting	protein	1
Thioredoxin	PF00085.20	gi|408405627|ref|YP_006863610.1|	-	3.8e-32	110.4	0.0	5.5e-32	109.8	0.0	1.2	1	0	0	1	1	1	1	Thioredoxin
Thioredoxin_2	PF13098.6	gi|408405627|ref|YP_006863610.1|	-	9e-09	35.8	0.1	2.7e-07	31.0	0.0	2.3	1	1	0	1	1	1	1	Thioredoxin-like	domain
Thioredoxin_8	PF13905.6	gi|408405627|ref|YP_006863610.1|	-	7.8e-07	29.3	0.0	0.00061	20.1	0.0	2.4	1	1	1	2	2	2	2	Thioredoxin-like
OST3_OST6	PF04756.13	gi|408405627|ref|YP_006863610.1|	-	1.9e-06	27.5	0.0	3.3e-06	26.7	0.0	1.5	1	1	1	2	2	2	1	OST3	/	OST6	family,	transporter	family
Thioredoxin_9	PF14595.6	gi|408405627|ref|YP_006863610.1|	-	7.6e-06	25.7	0.1	1e-05	25.3	0.1	1.3	1	1	0	1	1	1	1	Thioredoxin
Redoxin	PF08534.10	gi|408405627|ref|YP_006863610.1|	-	0.00011	22.0	0.1	0.23	11.2	0.1	2.2	1	1	0	2	2	2	2	Redoxin
TraF	PF13728.6	gi|408405627|ref|YP_006863610.1|	-	0.00074	19.4	0.1	0.0011	18.9	0.1	1.3	1	0	0	1	1	1	1	F	plasmid	transfer	operon	protein
Thioredoxin_5	PF13743.6	gi|408405627|ref|YP_006863610.1|	-	0.0012	18.5	0.7	1.6	8.4	0.0	3.0	2	1	1	3	3	3	2	Thioredoxin
Thioredoxin_3	PF13192.6	gi|408405627|ref|YP_006863610.1|	-	0.0017	18.3	0.1	0.0043	17.1	0.0	1.7	1	1	1	2	2	2	1	Thioredoxin	domain
Glutaredoxin	PF00462.24	gi|408405627|ref|YP_006863610.1|	-	0.0093	16.2	0.0	0.026	14.7	0.0	1.8	1	1	1	2	2	2	1	Glutaredoxin
Thioredoxin_6	PF13848.6	gi|408405627|ref|YP_006863610.1|	-	0.011	15.6	0.0	0.015	15.3	0.0	1.3	1	0	0	1	1	1	0	Thioredoxin-like	domain
HyaE	PF07449.11	gi|408405627|ref|YP_006863610.1|	-	0.011	15.6	0.0	0.027	14.5	0.0	1.5	2	0	0	2	2	2	0	Hydrogenase-1	expression	protein	HyaE
AhpC-TSA	PF00578.21	gi|408405627|ref|YP_006863610.1|	-	0.014	15.3	0.1	0.54	10.2	0.0	2.2	1	1	1	2	2	2	0	AhpC/TSA	family
Thioredoxin_4	PF13462.6	gi|408405627|ref|YP_006863610.1|	-	0.026	14.7	0.1	7.4	6.7	0.2	2.4	1	1	1	2	2	2	0	Thioredoxin
Thioredoxin_7	PF13899.6	gi|408405627|ref|YP_006863610.1|	-	0.056	13.6	0.0	0.097	12.9	0.0	1.4	1	0	0	1	1	1	0	Thioredoxin-like
SecA_SW	PF07516.13	gi|408405629|ref|YP_006863612.1|	-	0.049	13.7	0.1	0.086	12.9	0.0	1.5	2	0	0	2	2	2	0	SecA	Wing	and	Scaffold	domain
Tom5	PF10642.9	gi|408405629|ref|YP_006863612.1|	-	0.063	13.3	0.0	0.16	12.0	0.0	1.7	2	0	0	2	2	2	0	Mitochondrial	import	receptor	subunit	or	translocase
zf-U1	PF06220.12	gi|408405630|ref|YP_006863613.1|	-	0.09	12.6	0.1	0.18	11.6	0.1	1.5	1	0	0	1	1	1	0	U1	zinc	finger
eIF-5_eIF-2B	PF01873.17	gi|408405632|ref|YP_006863615.1|	-	7e-30	103.3	0.0	8.8e-30	103.0	0.0	1.1	1	0	0	1	1	1	1	Domain	found	in	IF2B/IF5
Lar_restr_allev	PF14354.6	gi|408405632|ref|YP_006863615.1|	-	0.00026	21.3	1.0	0.00038	20.8	1.0	1.3	1	0	0	1	1	1	1	Restriction	alleviation	protein	Lar
TF_Zn_Ribbon	PF08271.12	gi|408405632|ref|YP_006863615.1|	-	0.0008	18.9	0.4	0.0015	18.0	0.4	1.4	1	0	0	1	1	1	1	TFIIB	zinc-binding
Elf1	PF05129.13	gi|408405632|ref|YP_006863615.1|	-	0.014	15.4	0.1	0.021	14.9	0.1	1.3	1	0	0	1	1	1	0	Transcription	elongation	factor	Elf1	like
Prim_Zn_Ribbon	PF08273.12	gi|408405632|ref|YP_006863615.1|	-	0.02	15.2	0.2	0.046	14.0	0.2	1.6	1	0	0	1	1	1	0	Zinc-binding	domain	of	primase-helicase
Vps36-NZF-N	PF16988.5	gi|408405632|ref|YP_006863615.1|	-	0.042	13.3	0.7	0.07	12.5	0.7	1.3	1	0	0	1	1	1	0	Vacuolar	protein	sorting	36	NZF-N	zinc-finger	domain
DpnI	PF06044.12	gi|408405632|ref|YP_006863615.1|	-	0.052	13.2	0.0	0.089	12.4	0.0	1.3	1	0	0	1	1	1	0	Dam-replacing	family
zinc_ribbon_2	PF13240.6	gi|408405632|ref|YP_006863615.1|	-	0.073	12.8	1.5	8.7	6.2	0.2	2.3	2	0	0	2	2	2	0	zinc-ribbon	domain
zf-ribbon_3	PF13248.6	gi|408405632|ref|YP_006863615.1|	-	0.088	12.2	2.0	1.1	8.8	0.4	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
zf-RRN7	PF11781.8	gi|408405632|ref|YP_006863615.1|	-	0.16	11.7	1.2	11	5.8	0.2	2.2	2	0	0	2	2	2	0	Zinc-finger	of	RNA-polymerase	I-specific	TFIIB,	Rrn7
Rubredoxin_2	PF18073.1	gi|408405632|ref|YP_006863615.1|	-	0.27	11.0	1.8	14	5.5	0.1	2.3	2	0	0	2	2	2	0	Rubredoxin	metal	binding	domain
DUF3797	PF12677.7	gi|408405632|ref|YP_006863615.1|	-	0.4	10.6	2.2	0.28	11.1	0.7	1.5	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF3797)
DNA_ligase_ZBD	PF03119.16	gi|408405632|ref|YP_006863615.1|	-	2.3	8.3	5.2	4.7	7.3	5.3	1.6	1	1	0	1	1	1	0	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
Prok-RING_1	PF14446.6	gi|408405632|ref|YP_006863615.1|	-	2.4	8.1	6.5	0.96	9.4	1.4	2.1	1	1	1	2	2	2	0	Prokaryotic	RING	finger	family	1
N6_N4_Mtase	PF01555.18	gi|408405633|ref|YP_006863616.1|	-	8.1e-40	137.0	2.8	1.3e-39	136.3	2.8	1.3	1	1	0	1	1	1	1	DNA	methylase
Methyltransf_25	PF13649.6	gi|408405633|ref|YP_006863616.1|	-	0.00039	21.1	0.0	0.0026	18.4	0.0	2.4	3	0	0	3	3	3	1	Methyltransferase	domain
MethyltransfD12	PF02086.15	gi|408405633|ref|YP_006863616.1|	-	0.0036	17.0	0.0	2.3	7.8	0.0	2.5	2	0	0	2	2	2	2	D12	class	N6	adenine-specific	DNA	methyltransferase
Methyltransf_12	PF08242.12	gi|408405633|ref|YP_006863616.1|	-	0.017	15.9	0.4	0.59	10.9	0.0	2.9	3	0	0	3	3	3	0	Methyltransferase	domain
Methyltransf_11	PF08241.12	gi|408405633|ref|YP_006863616.1|	-	0.022	15.4	0.0	1.3	9.7	0.0	2.9	3	0	0	3	3	3	0	Methyltransferase	domain
Cons_hypoth95	PF03602.15	gi|408405633|ref|YP_006863616.1|	-	0.03	14.0	0.1	0.13	11.9	0.0	2.1	2	0	0	2	2	2	0	Conserved	hypothetical	protein	95
N6-adenineMlase	PF10237.9	gi|408405633|ref|YP_006863616.1|	-	0.057	13.2	0.1	0.1	12.4	0.1	1.5	1	1	0	1	1	1	0	Probable	N6-adenine	methyltransferase
PrmA	PF06325.13	gi|408405633|ref|YP_006863616.1|	-	0.074	12.4	0.0	0.12	11.7	0.0	1.3	1	0	0	1	1	1	0	Ribosomal	protein	L11	methyltransferase	(PrmA)
Glycos_transf_2	PF00535.26	gi|408405637|ref|YP_006863620.1|	-	8.1e-34	116.9	0.1	1.3e-33	116.2	0.1	1.3	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_tranf_2_3	PF13641.6	gi|408405637|ref|YP_006863620.1|	-	6.7e-26	91.6	0.1	1e-22	81.2	0.0	2.1	2	0	0	2	2	2	2	Glycosyltransferase	like	family	2
Chitin_synth_2	PF03142.15	gi|408405637|ref|YP_006863620.1|	-	9.2e-17	60.8	11.8	5e-16	58.4	10.1	2.5	2	1	0	2	2	2	1	Chitin	synthase
Glyco_trans_2_3	PF13632.6	gi|408405637|ref|YP_006863620.1|	-	2.1e-12	47.4	4.8	3.1e-11	43.6	4.8	2.2	1	1	0	1	1	1	1	Glycosyl	transferase	family	group	2
Glyco_transf_21	PF13506.6	gi|408405637|ref|YP_006863620.1|	-	2.4e-09	36.9	0.4	1.6e-05	24.4	0.0	2.2	1	1	1	2	2	2	2	Glycosyl	transferase	family	21
Glyco_tranf_2_2	PF10111.9	gi|408405637|ref|YP_006863620.1|	-	3.1e-08	33.4	0.4	4.7e-08	32.8	0.4	1.3	1	0	0	1	1	1	1	Glycosyltransferase	like	family	2
Glyco_tranf_2_5	PF13712.6	gi|408405637|ref|YP_006863620.1|	-	0.00052	19.8	0.1	0.001	18.8	0.1	1.5	1	0	0	1	1	1	1	Glycosyltransferase	like	family
NTP_transferase	PF00483.23	gi|408405637|ref|YP_006863620.1|	-	0.004	16.8	0.2	0.0059	16.2	0.2	1.2	1	0	0	1	1	1	1	Nucleotidyl	transferase
Glyco_tranf_2_4	PF13704.6	gi|408405637|ref|YP_006863620.1|	-	0.012	16.1	0.0	0.035	14.6	0.0	1.8	1	0	0	1	1	1	0	Glycosyl	transferase	family	2
Polysacc_deac_1	PF01522.21	gi|408405638|ref|YP_006863621.1|	-	3.4e-10	39.9	0.0	6.9e-10	38.9	0.0	1.5	2	0	0	2	2	2	1	Polysaccharide	deacetylase
UCR_Fe-S_N	PF10399.9	gi|408405638|ref|YP_006863621.1|	-	0.4	10.1	2.2	0.74	9.2	2.2	1.4	1	0	0	1	1	1	0	Ubiquitinol-cytochrome	C	reductase	Fe-S	subunit	TAT	signal
Epimerase	PF01370.21	gi|408405639|ref|YP_006863622.1|	-	2.3e-20	73.1	0.0	3.9e-20	72.4	0.0	1.3	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
GDP_Man_Dehyd	PF16363.5	gi|408405639|ref|YP_006863622.1|	-	3.6e-20	72.6	0.0	3.3e-14	53.0	0.0	2.8	2	1	0	2	2	2	2	GDP-mannose	4,6	dehydratase
UDPG_MGDP_dh_N	PF03721.14	gi|408405639|ref|YP_006863622.1|	-	0.0025	17.4	0.0	0.0044	16.6	0.0	1.4	1	0	0	1	1	1	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
Rossmann-like	PF10727.9	gi|408405639|ref|YP_006863622.1|	-	0.049	13.5	0.0	0.09	12.6	0.0	1.3	1	0	0	1	1	1	0	Rossmann-like	domain
RmlD_sub_bind	PF04321.17	gi|408405639|ref|YP_006863622.1|	-	0.11	11.5	0.0	0.48	9.5	0.0	2.0	2	1	0	2	2	2	0	RmlD	substrate	binding	domain
DegT_DnrJ_EryC1	PF01041.17	gi|408405640|ref|YP_006863623.1|	-	5.2e-116	387.9	0.1	5.9e-116	387.7	0.1	1.0	1	0	0	1	1	1	1	DegT/DnrJ/EryC1/StrS	aminotransferase	family
Aminotran_1_2	PF00155.21	gi|408405640|ref|YP_006863623.1|	-	1.4e-09	37.6	0.0	3e-09	36.5	0.0	1.6	2	0	0	2	2	2	1	Aminotransferase	class	I	and	II
Beta_elim_lyase	PF01212.21	gi|408405640|ref|YP_006863623.1|	-	1e-07	31.6	0.4	2.5e-07	30.3	0.4	1.5	1	1	0	1	1	1	1	Beta-eliminating	lyase
Aminotran_5	PF00266.19	gi|408405640|ref|YP_006863623.1|	-	3e-07	29.7	0.1	5.5e-07	28.9	0.1	1.4	1	0	0	1	1	1	1	Aminotransferase	class-V
Cys_Met_Meta_PP	PF01053.20	gi|408405640|ref|YP_006863623.1|	-	1.4e-05	23.8	0.1	2e-05	23.3	0.1	1.2	1	0	0	1	1	1	1	Cys/Met	metabolism	PLP-dependent	enzyme
OKR_DC_1	PF01276.20	gi|408405640|ref|YP_006863623.1|	-	0.0056	15.5	0.0	0.0085	14.9	0.0	1.3	1	0	0	1	1	1	1	Orn/Lys/Arg	decarboxylase,	major	domain
ComK	PF06338.11	gi|408405640|ref|YP_006863623.1|	-	0.012	15.3	0.0	0.022	14.4	0.0	1.4	1	0	0	1	1	1	0	ComK	protein
DUF1967	PF09269.11	gi|408405640|ref|YP_006863623.1|	-	0.094	12.7	0.0	0.27	11.2	0.0	1.8	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1967)
Ammonium_transp	PF00909.21	gi|408405641|ref|YP_006863624.1|	-	3.2e-109	365.3	31.5	3.6e-109	365.1	31.5	1.0	1	0	0	1	1	1	1	Ammonium	Transporter	Family
ArsA_ATPase	PF02374.15	gi|408405642|ref|YP_006863625.1|	-	1.6e-63	214.8	0.0	1.9e-63	214.5	0.0	1.0	1	0	0	1	1	1	1	Anion-transporting	ATPase
CbiA	PF01656.23	gi|408405642|ref|YP_006863625.1|	-	3.9e-09	36.6	0.0	5.3e-09	36.2	0.0	1.3	1	1	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
ArsA_HSP20	PF17886.1	gi|408405642|ref|YP_006863625.1|	-	3.1e-08	33.0	0.0	6.4e-08	32.0	0.0	1.6	1	0	0	1	1	1	1	HSP20-like	domain	found	in	ArsA
AAA_31	PF13614.6	gi|408405642|ref|YP_006863625.1|	-	4.3e-08	33.3	0.1	1.3e-07	31.7	0.0	1.8	2	0	0	2	2	2	1	AAA	domain
Fer4_NifH	PF00142.18	gi|408405642|ref|YP_006863625.1|	-	2.3e-05	24.0	0.0	4.2e-05	23.1	0.0	1.4	1	0	0	1	1	1	1	4Fe-4S	iron	sulfur	cluster	binding	proteins,	NifH/frxC	family
ParA	PF10609.9	gi|408405642|ref|YP_006863625.1|	-	0.00024	20.7	0.2	0.00065	19.2	0.1	1.9	2	1	0	2	2	2	1	NUBPL	iron-transfer	P-loop	NTPase
ATPase	PF06745.13	gi|408405642|ref|YP_006863625.1|	-	0.0019	17.6	0.0	0.0034	16.8	0.0	1.4	1	0	0	1	1	1	1	KaiC
PhoH	PF02562.16	gi|408405642|ref|YP_006863625.1|	-	0.0026	17.2	0.0	0.0059	16.1	0.0	1.7	2	0	0	2	2	2	1	PhoH-like	protein
MeaB	PF03308.16	gi|408405642|ref|YP_006863625.1|	-	0.056	12.4	0.1	0.12	11.4	0.1	1.5	1	0	0	1	1	1	0	Methylmalonyl	Co-A	mutase-associated	GTPase	MeaB
IstB_IS21	PF01695.17	gi|408405642|ref|YP_006863625.1|	-	0.18	11.6	0.0	0.34	10.6	0.0	1.4	1	0	0	1	1	1	0	IstB-like	ATP	binding	protein
Fer4_7	PF12838.7	gi|408405643|ref|YP_006863626.1|	-	2.8e-09	37.4	2.3	0.00023	21.7	0.6	2.3	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4	PF00037.27	gi|408405643|ref|YP_006863626.1|	-	6.2e-09	35.3	12.5	7.3e-06	25.6	1.8	2.3	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_10	PF13237.6	gi|408405643|ref|YP_006863626.1|	-	1.6e-07	31.3	16.0	6.5e-07	29.4	5.7	1.7	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_16	PF13484.6	gi|408405643|ref|YP_006863626.1|	-	2e-07	31.8	14.8	1.5e-05	25.8	6.5	2.1	1	1	1	2	2	2	2	4Fe-4S	double	cluster	binding	domain
Fer4_21	PF14697.6	gi|408405643|ref|YP_006863626.1|	-	3.3e-07	30.3	3.3	0.0014	18.7	0.4	2.3	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_9	PF13187.6	gi|408405643|ref|YP_006863626.1|	-	6.7e-07	29.4	7.4	4.3e-06	26.8	7.8	1.9	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_8	PF13183.6	gi|408405643|ref|YP_006863626.1|	-	1.6e-05	25.3	6.7	0.0006	20.2	8.1	2.2	1	1	2	3	3	3	3	4Fe-4S	dicluster	domain
Fer4_6	PF12837.7	gi|408405643|ref|YP_006863626.1|	-	2.7e-05	24.0	13.0	0.018	15.1	2.0	2.3	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_17	PF13534.6	gi|408405643|ref|YP_006863626.1|	-	8.6e-05	23.0	3.8	0.00039	20.9	4.2	1.8	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_13	PF13370.6	gi|408405643|ref|YP_006863626.1|	-	0.00057	20.4	9.7	0.14	12.8	0.4	2.7	2	1	0	2	2	2	2	4Fe-4S	single	cluster	domain	of	Ferredoxin	I
Fer4_2	PF12797.7	gi|408405643|ref|YP_006863626.1|	-	0.00059	19.8	11.5	0.039	14.0	3.2	2.4	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_4	PF12800.7	gi|408405643|ref|YP_006863626.1|	-	0.00074	19.8	6.3	0.036	14.6	1.3	2.4	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_22	PF17179.4	gi|408405643|ref|YP_006863626.1|	-	0.0033	18.2	0.3	3.3	8.6	0.0	2.3	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_15	PF13459.6	gi|408405643|ref|YP_006863626.1|	-	0.0052	17.5	8.8	0.14	12.9	3.3	2.6	2	1	0	2	2	2	2	4Fe-4S	single	cluster	domain
Fer4_18	PF13746.6	gi|408405643|ref|YP_006863626.1|	-	0.0057	16.8	8.0	0.0082	16.3	5.9	2.1	1	1	1	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_3	PF12798.7	gi|408405643|ref|YP_006863626.1|	-	0.091	13.7	15.2	1.7	9.7	6.4	2.5	2	0	0	2	2	2	0	4Fe-4S	binding	domain
hGDE_N	PF14699.6	gi|408405644|ref|YP_006863627.1|	-	0.035	14.3	0.0	0.06	13.5	0.0	1.3	1	0	0	1	1	1	0	N-terminal	domain	from	the	human	glycogen	debranching	enzyme
DUF5324	PF17258.2	gi|408405644|ref|YP_006863627.1|	-	0.068	12.9	0.5	0.092	12.4	0.5	1.1	1	0	0	1	1	1	0	Family	of	unknown	function	(DUF5324)
NICE-3	PF07406.11	gi|408405645|ref|YP_006863628.1|	-	0.14	12.2	0.1	0.2	11.6	0.1	1.2	1	0	0	1	1	1	0	NICE-3	protein
FeoA	PF04023.14	gi|408405646|ref|YP_006863629.1|	-	0.0005	20.3	0.0	0.0007	19.8	0.0	1.3	1	0	0	1	1	1	1	FeoA	domain
NapD	PF03927.13	gi|408405647|ref|YP_006863630.1|	-	0.026	14.6	0.0	0.027	14.5	0.0	1.1	1	0	0	1	1	1	0	NapD	protein
AAA	PF00004.29	gi|408405648|ref|YP_006863631.1|	-	6.6e-97	321.0	0.0	1e-48	165.1	0.0	2.3	2	0	0	2	2	2	2	ATPase	family	associated	with	various	cellular	activities	(AAA)
CDC48_N	PF02359.18	gi|408405648|ref|YP_006863631.1|	-	2.3e-32	111.0	0.5	7.4e-32	109.4	0.5	1.9	1	0	0	1	1	1	1	Cell	division	protein	48	(CDC48),	N-terminal	domain
AAA_lid_3	PF17862.1	gi|408405648|ref|YP_006863631.1|	-	1.7e-25	88.6	0.1	1.1e-11	44.3	0.0	2.7	2	0	0	2	2	2	2	AAA+	lid	domain
AAA_16	PF13191.6	gi|408405648|ref|YP_006863631.1|	-	3.9e-15	56.6	0.5	4.6e-06	27.1	0.0	4.0	2	2	1	3	3	3	2	AAA	ATPase	domain
AAA_2	PF07724.14	gi|408405648|ref|YP_006863631.1|	-	6.3e-15	55.7	0.0	1.5e-06	28.4	0.0	2.7	3	0	0	3	3	2	2	AAA	domain	(Cdc48	subfamily)
RuvB_N	PF05496.12	gi|408405648|ref|YP_006863631.1|	-	7.2e-15	55.1	0.0	6.4e-09	35.7	0.0	2.6	2	0	0	2	2	2	2	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
AAA_22	PF13401.6	gi|408405648|ref|YP_006863631.1|	-	1.1e-10	41.9	0.9	0.0059	16.9	0.1	3.9	2	2	1	4	4	4	2	AAA	domain
TIP49	PF06068.13	gi|408405648|ref|YP_006863631.1|	-	1.4e-10	40.9	1.1	0.00019	20.7	0.0	2.7	3	0	0	3	3	3	2	TIP49	P-loop	domain
AAA_14	PF13173.6	gi|408405648|ref|YP_006863631.1|	-	9.8e-10	38.6	0.0	0.00048	20.2	0.0	2.4	2	0	0	2	2	2	2	AAA	domain
AAA_33	PF13671.6	gi|408405648|ref|YP_006863631.1|	-	2.8e-09	37.3	0.0	0.0014	18.8	0.0	2.5	2	0	0	2	2	2	2	AAA	domain
AAA_5	PF07728.14	gi|408405648|ref|YP_006863631.1|	-	7.3e-09	35.7	2.5	0.00049	20.1	0.1	4.3	4	2	0	4	4	3	2	AAA	domain	(dynein-related	subfamily)
Sigma54_activat	PF00158.26	gi|408405648|ref|YP_006863631.1|	-	5.8e-08	32.6	0.1	0.016	14.9	0.0	3.3	3	1	0	3	3	2	2	Sigma-54	interaction	domain
IstB_IS21	PF01695.17	gi|408405648|ref|YP_006863631.1|	-	1.3e-07	31.5	0.1	0.0077	16.0	0.0	2.3	2	0	0	2	2	2	2	IstB-like	ATP	binding	protein
RNA_helicase	PF00910.22	gi|408405648|ref|YP_006863631.1|	-	9.9e-07	29.1	0.0	0.035	14.5	0.0	2.6	2	0	0	2	2	2	2	RNA	helicase
AAA_18	PF13238.6	gi|408405648|ref|YP_006863631.1|	-	1.8e-06	28.5	0.0	0.017	15.6	0.0	2.5	2	0	0	2	2	2	2	AAA	domain
Bac_DnaA	PF00308.18	gi|408405648|ref|YP_006863631.1|	-	2.2e-06	27.7	0.0	0.006	16.4	0.0	2.5	2	0	0	2	2	2	2	Bacterial	dnaA	protein
ATPase	PF06745.13	gi|408405648|ref|YP_006863631.1|	-	3e-06	26.8	1.5	0.11	11.8	0.0	3.4	2	1	1	3	3	3	2	KaiC
AAA_28	PF13521.6	gi|408405648|ref|YP_006863631.1|	-	3.1e-06	27.5	0.0	0.023	14.9	0.0	2.7	2	0	0	2	2	2	2	AAA	domain
AAA_24	PF13479.6	gi|408405648|ref|YP_006863631.1|	-	5.9e-06	26.2	0.0	0.034	13.9	0.0	2.4	2	0	0	2	2	2	2	AAA	domain
AAA_7	PF12775.7	gi|408405648|ref|YP_006863631.1|	-	7.1e-06	25.7	0.1	0.044	13.3	0.0	2.5	2	0	0	2	2	2	2	P-loop	containing	dynein	motor	region
TsaE	PF02367.17	gi|408405648|ref|YP_006863631.1|	-	1e-05	25.5	0.0	0.23	11.5	0.0	2.6	2	0	0	2	2	2	2	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
CDC48_2	PF02933.17	gi|408405648|ref|YP_006863631.1|	-	1.2e-05	24.9	0.0	3.6e-05	23.4	0.0	1.8	1	0	0	1	1	1	1	Cell	division	protein	48	(CDC48),	domain	2
Mg_chelatase	PF01078.21	gi|408405648|ref|YP_006863631.1|	-	1.3e-05	24.7	0.8	0.04	13.3	0.1	2.5	2	0	0	2	2	2	2	Magnesium	chelatase,	subunit	ChlI
ABC_tran	PF00005.27	gi|408405648|ref|YP_006863631.1|	-	2.2e-05	25.0	0.1	0.19	12.3	0.0	2.6	2	0	0	2	2	2	2	ABC	transporter
PhoH	PF02562.16	gi|408405648|ref|YP_006863631.1|	-	2.8e-05	23.7	0.5	0.19	11.1	0.1	2.4	2	0	0	2	2	2	2	PhoH-like	protein
Zeta_toxin	PF06414.12	gi|408405648|ref|YP_006863631.1|	-	5.4e-05	22.6	0.2	0.15	11.3	0.0	2.5	2	0	0	2	2	2	2	Zeta	toxin
NACHT	PF05729.12	gi|408405648|ref|YP_006863631.1|	-	6.7e-05	22.9	0.2	0.57	10.1	0.1	3.2	3	0	0	3	3	3	2	NACHT	domain
DUF2075	PF09848.9	gi|408405648|ref|YP_006863631.1|	-	0.00016	21.1	0.0	0.56	9.4	0.0	2.4	2	0	0	2	2	2	2	Uncharacterized	conserved	protein	(DUF2075)
ATPase_2	PF01637.18	gi|408405648|ref|YP_006863631.1|	-	0.00016	21.6	0.0	0.12	12.2	0.0	2.9	2	1	0	3	3	2	1	ATPase	domain	predominantly	from	Archaea
NB-ARC	PF00931.22	gi|408405648|ref|YP_006863631.1|	-	0.00022	20.5	0.0	0.44	9.7	0.0	2.5	2	0	0	2	2	2	2	NB-ARC	domain
DUF815	PF05673.13	gi|408405648|ref|YP_006863631.1|	-	0.00036	19.8	0.0	0.12	11.6	0.0	2.5	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF815)
Cytidylate_kin	PF02224.18	gi|408405648|ref|YP_006863631.1|	-	0.0004	20.2	0.2	0.31	10.7	0.0	2.3	2	0	0	2	2	2	1	Cytidylate	kinase
AAA_25	PF13481.6	gi|408405648|ref|YP_006863631.1|	-	0.0008	19.0	1.1	1.4	8.5	0.2	3.4	2	1	0	3	3	3	1	AAA	domain
AAA_3	PF07726.11	gi|408405648|ref|YP_006863631.1|	-	0.0011	18.8	0.0	0.73	9.7	0.0	2.5	2	0	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_11	PF13086.6	gi|408405648|ref|YP_006863631.1|	-	0.0013	18.6	0.0	0.71	9.6	0.0	2.4	2	0	0	2	2	2	1	AAA	domain
AAA_30	PF13604.6	gi|408405648|ref|YP_006863631.1|	-	0.0024	17.6	0.9	1.9	8.2	0.0	2.5	2	0	0	2	2	2	1	AAA	domain
Parvo_NS1	PF01057.17	gi|408405648|ref|YP_006863631.1|	-	0.0026	16.9	0.1	0.31	10.1	0.0	2.2	2	0	0	2	2	2	1	Parvovirus	non-structural	protein	NS1
Sigma54_activ_2	PF14532.6	gi|408405648|ref|YP_006863631.1|	-	0.0037	17.4	0.0	1.9	8.6	0.0	2.5	2	0	0	2	2	2	1	Sigma-54	interaction	domain
T2SSE	PF00437.20	gi|408405648|ref|YP_006863631.1|	-	0.0083	15.2	0.0	2.3	7.2	0.0	2.3	2	0	0	2	2	2	1	Type	II/IV	secretion	system	protein
AAA_19	PF13245.6	gi|408405648|ref|YP_006863631.1|	-	0.011	16.1	0.3	1.5	9.1	0.0	2.5	2	0	0	2	2	2	0	AAA	domain
ResIII	PF04851.15	gi|408405648|ref|YP_006863631.1|	-	0.013	15.6	0.0	3.3	7.7	0.0	2.4	2	0	0	2	2	2	0	Type	III	restriction	enzyme,	res	subunit
TniB	PF05621.11	gi|408405648|ref|YP_006863631.1|	-	0.013	14.9	0.0	5	6.5	0.0	2.9	3	0	0	3	3	3	0	Bacterial	TniB	protein
ATP-synt_ab	PF00006.25	gi|408405648|ref|YP_006863631.1|	-	0.013	15.1	0.0	5.1	6.7	0.0	2.4	2	0	0	2	2	2	0	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
AAA_29	PF13555.6	gi|408405648|ref|YP_006863631.1|	-	0.016	14.9	0.3	2.9	7.7	0.1	2.4	2	0	0	2	2	2	0	P-loop	containing	region	of	AAA	domain
Rad17	PF03215.15	gi|408405648|ref|YP_006863631.1|	-	0.019	14.9	0.1	14	5.5	0.0	3.1	2	1	1	3	3	3	0	Rad17	P-loop	domain
NTPase_1	PF03266.15	gi|408405648|ref|YP_006863631.1|	-	0.02	14.8	0.9	12	5.7	0.0	3.7	3	1	1	4	4	3	0	NTPase
Guanylate_kin	PF00625.21	gi|408405648|ref|YP_006863631.1|	-	0.024	14.3	0.1	21	4.7	0.0	3.6	3	1	1	4	4	3	0	Guanylate	kinase
AAA_17	PF13207.6	gi|408405648|ref|YP_006863631.1|	-	0.026	14.9	0.0	1.3	9.5	0.0	2.7	2	0	0	2	2	2	0	AAA	domain
Viral_helicase1	PF01443.18	gi|408405648|ref|YP_006863631.1|	-	0.032	14.0	0.0	1.1	9.0	0.0	2.2	2	0	0	2	2	2	0	Viral	(Superfamily	1)	RNA	helicase
IPT	PF01745.16	gi|408405648|ref|YP_006863631.1|	-	0.049	13.0	0.9	10	5.5	0.1	2.8	3	0	0	3	3	3	0	Isopentenyl	transferase
AFG1_ATPase	PF03969.16	gi|408405648|ref|YP_006863631.1|	-	0.055	12.3	0.0	9.5	5.0	0.0	2.4	2	0	0	2	2	2	0	AFG1-like	ATPase
CPT	PF07931.12	gi|408405648|ref|YP_006863631.1|	-	0.088	12.6	0.0	11	5.8	0.0	2.7	2	0	0	2	2	2	0	Chloramphenicol	phosphotransferase-like	protein
Vps4_C	PF09336.10	gi|408405648|ref|YP_006863631.1|	-	0.094	12.7	0.1	23	5.1	0.0	2.9	2	0	0	2	2	2	0	Vps4	C	terminal	oligomerisation	domain
PduV-EutP	PF10662.9	gi|408405648|ref|YP_006863631.1|	-	0.15	11.8	0.0	22	4.8	0.0	2.3	2	0	0	2	2	2	0	Ethanolamine	utilisation	-	propanediol	utilisation
PIF1	PF05970.14	gi|408405648|ref|YP_006863631.1|	-	0.21	10.7	0.0	20	4.2	0.0	2.2	2	0	0	2	2	2	0	PIF1-like	helicase
zf-C2H2	PF00096.26	gi|408405650|ref|YP_006863633.1|	-	2.5e-05	24.4	0.2	3.4e-05	24.0	0.2	1.2	1	0	0	1	1	1	1	Zinc	finger,	C2H2	type
zf-C2H2_4	PF13894.6	gi|408405650|ref|YP_006863633.1|	-	0.00052	20.6	0.1	0.00072	20.2	0.1	1.2	1	0	0	1	1	1	1	C2H2-type	zinc	finger
Actin_micro	PF17003.5	gi|408405650|ref|YP_006863633.1|	-	0.013	14.7	0.0	0.013	14.7	0.0	1.0	1	0	0	1	1	1	0	Putative	actin-like	family
CTU2	PF10288.9	gi|408405650|ref|YP_006863633.1|	-	0.025	14.8	0.5	0.027	14.7	0.5	1.1	1	0	0	1	1	1	0	Cytoplasmic	tRNA	2-thiolation	protein	2
zf-C2H2_9	PF16293.5	gi|408405650|ref|YP_006863633.1|	-	0.13	12.1	0.1	0.17	11.7	0.1	1.2	1	0	0	1	1	1	0	C2H2	type	zinc-finger	(1	copy)
zf-H2C2_5	PF13909.6	gi|408405650|ref|YP_006863633.1|	-	0.3	10.9	2.9	0.64	9.8	2.9	1.6	1	1	0	1	1	1	0	C2H2-type	zinc-finger	domain
CBS	PF00571.28	gi|408405651|ref|YP_006863634.1|	-	3.5e-20	72.2	3.4	1.1e-11	44.9	0.3	2.1	2	0	0	2	2	2	2	CBS	domain
CBS	PF00571.28	gi|408405652|ref|YP_006863635.1|	-	9.2e-38	128.5	7.5	4.5e-09	36.6	0.6	4.4	4	0	0	4	4	4	4	CBS	domain
GSDH	PF07995.11	gi|408405653|ref|YP_006863636.1|	-	2.6e-89	299.8	0.0	5e-89	298.9	0.0	1.4	1	1	0	1	1	1	1	Glucose	/	Sorbosone	dehydrogenase
Reg_prop	PF07494.11	gi|408405653|ref|YP_006863636.1|	-	0.0057	16.7	0.0	1.2	9.6	0.0	3.1	3	0	0	3	3	3	1	Two	component	regulator	propeller
DUF5122	PF17164.4	gi|408405653|ref|YP_006863636.1|	-	0.0066	16.7	0.9	0.12	12.6	0.1	3.5	2	2	0	2	2	2	1	Domain	of	unknown	function	(DUF5122)	beta-propeller
PQQ_3	PF13570.6	gi|408405653|ref|YP_006863636.1|	-	0.09	13.3	1.1	37	5.0	0.1	3.9	5	0	0	5	5	5	0	PQQ-like	domain
HMG-CoA_red	PF00368.18	gi|408405654|ref|YP_006863637.1|	-	1.1e-105	353.6	12.6	1.3e-105	353.4	12.6	1.0	1	0	0	1	1	1	1	Hydroxymethylglutaryl-coenzyme	A	reductase
HisG	PF01634.18	gi|408405655|ref|YP_006863638.1|	-	4.6e-45	153.5	0.1	5.9e-45	153.1	0.1	1.1	1	0	0	1	1	1	1	ATP	phosphoribosyltransferase
HisG_C	PF08029.11	gi|408405655|ref|YP_006863638.1|	-	1.1e-15	57.5	0.0	4.4e-15	55.6	0.0	2.0	3	0	0	3	3	3	1	HisG,	C-terminal	domain
Histidinol_dh	PF00815.20	gi|408405656|ref|YP_006863639.1|	-	3.1e-141	471.1	7.1	3.5e-141	470.9	7.1	1.0	1	0	0	1	1	1	1	Histidinol	dehydrogenase
Aminotran_1_2	PF00155.21	gi|408405657|ref|YP_006863640.1|	-	6.3e-43	147.3	0.0	7.1e-43	147.2	0.0	1.0	1	0	0	1	1	1	1	Aminotransferase	class	I	and	II
Alliinase_C	PF04864.13	gi|408405657|ref|YP_006863640.1|	-	3.7e-06	26.1	0.0	6.5e-06	25.3	0.0	1.4	1	0	0	1	1	1	1	Allinase
DUF3294	PF07957.11	gi|408405657|ref|YP_006863640.1|	-	0.036	13.8	0.1	0.71	9.6	0.0	2.2	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3294)
HAD_2	PF13419.6	gi|408405658|ref|YP_006863641.1|	-	1.2e-11	45.0	0.1	2.4e-06	27.8	0.0	2.2	2	0	0	2	2	2	2	Haloacid	dehalogenase-like	hydrolase
Hydrolase	PF00702.26	gi|408405658|ref|YP_006863641.1|	-	6.6e-09	36.4	0.4	2.6e-05	24.6	0.0	2.5	3	0	0	3	3	3	2	haloacid	dehalogenase-like	hydrolase
Hydrolase_like	PF13242.6	gi|408405658|ref|YP_006863641.1|	-	0.012	15.7	0.1	0.021	14.9	0.1	1.5	1	0	0	1	1	1	0	HAD-hyrolase-like
HSP20	PF00011.21	gi|408405659|ref|YP_006863642.1|	-	2.7e-11	43.5	1.2	4.9e-10	39.5	1.2	2.1	1	1	0	1	1	1	1	Hsp20/alpha	crystallin	family
ArsA_HSP20	PF17886.1	gi|408405659|ref|YP_006863642.1|	-	2.1e-07	30.4	0.0	3.1e-07	29.8	0.0	1.3	1	0	0	1	1	1	1	HSP20-like	domain	found	in	ArsA
CS	PF04969.16	gi|408405659|ref|YP_006863642.1|	-	0.0038	18.2	0.9	0.0057	17.6	0.9	1.2	1	0	0	1	1	1	1	CS	domain
DUF3944	PF13099.6	gi|408405659|ref|YP_006863642.1|	-	0.12	12.3	0.0	0.58	10.1	0.0	2.0	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF3944)
IGPD	PF00475.18	gi|408405660|ref|YP_006863643.1|	-	1.5e-43	148.5	1.8	2.4e-43	147.9	1.8	1.3	1	0	0	1	1	1	1	Imidazoleglycerol-phosphate	dehydratase
GATase	PF00117.28	gi|408405661|ref|YP_006863644.1|	-	2.6e-23	82.8	0.0	3.1e-23	82.6	0.0	1.0	1	0	0	1	1	1	1	Glutamine	amidotransferase	class-I
GATase_3	PF07685.14	gi|408405661|ref|YP_006863644.1|	-	6.8e-09	35.6	0.0	9e-09	35.2	0.0	1.2	1	0	0	1	1	1	1	CobB/CobQ-like	glutamine	amidotransferase	domain
SNO	PF01174.19	gi|408405661|ref|YP_006863644.1|	-	9.5e-08	32.1	0.0	8.6e-05	22.5	0.0	2.0	2	0	0	2	2	2	2	SNO	glutamine	amidotransferase	family
Peptidase_C26	PF07722.13	gi|408405661|ref|YP_006863644.1|	-	3.3e-07	30.3	0.8	0.0001	22.2	0.8	2.9	1	1	0	1	1	1	1	Peptidase	C26
DJ-1_PfpI	PF01965.24	gi|408405661|ref|YP_006863644.1|	-	0.02	14.7	0.0	0.031	14.1	0.0	1.3	1	0	0	1	1	1	0	DJ-1/PfpI	family
His_biosynth	PF00977.21	gi|408405662|ref|YP_006863645.1|	-	5.3e-71	238.7	4.2	6e-71	238.5	4.2	1.0	1	0	0	1	1	1	1	Histidine	biosynthesis	protein
Dus	PF01207.17	gi|408405662|ref|YP_006863645.1|	-	2.2e-09	36.9	0.4	3e-07	29.8	0.0	2.1	2	0	0	2	2	2	2	Dihydrouridine	synthase	(Dus)
DHO_dh	PF01180.21	gi|408405662|ref|YP_006863645.1|	-	5.8e-09	35.6	0.7	0.00014	21.2	0.2	2.1	2	0	0	2	2	2	2	Dihydroorotate	dehydrogenase
PcrB	PF01884.17	gi|408405662|ref|YP_006863645.1|	-	2.2e-07	30.6	2.0	0.00027	20.5	0.1	2.2	2	0	0	2	2	2	2	PcrB	family
NMO	PF03060.15	gi|408405662|ref|YP_006863645.1|	-	7.9e-06	25.5	3.0	0.00046	19.7	0.3	2.2	2	0	0	2	2	2	2	Nitronate	monooxygenase
IMPDH	PF00478.25	gi|408405662|ref|YP_006863645.1|	-	6.2e-05	22.1	3.3	0.0065	15.5	0.6	2.2	2	0	0	2	2	2	2	IMP	dehydrogenase	/	GMP	reductase	domain
IGPS	PF00218.21	gi|408405662|ref|YP_006863645.1|	-	0.00048	19.4	0.6	0.23	10.6	0.1	2.6	2	1	0	2	2	2	2	Indole-3-glycerol	phosphate	synthase
ThiG	PF05690.14	gi|408405662|ref|YP_006863645.1|	-	0.01	15.2	1.5	1	8.6	0.1	2.8	2	1	1	3	3	3	0	Thiazole	biosynthesis	protein	ThiG
FMN_dh	PF01070.18	gi|408405662|ref|YP_006863645.1|	-	0.02	13.9	3.4	0.044	12.8	0.4	2.2	2	1	0	2	2	2	0	FMN-dependent	dehydrogenase
DUF5642	PF18702.1	gi|408405662|ref|YP_006863645.1|	-	0.027	14.2	0.2	0.045	13.5	0.2	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF5642)
NES_C_h	PF18208.1	gi|408405662|ref|YP_006863645.1|	-	0.053	13.8	0.0	0.59	10.4	0.0	2.1	1	1	1	2	2	2	0	Nicking	enzyme	C-terminal	middle	helical	domain
DUF4406	PF14359.6	gi|408405662|ref|YP_006863645.1|	-	0.07	13.6	0.0	0.14	12.7	0.0	1.6	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4406)
Epimerase_2	PF02350.19	gi|408405662|ref|YP_006863645.1|	-	0.088	11.6	0.1	0.12	11.2	0.1	1.2	1	0	0	1	1	1	0	UDP-N-acetylglucosamine	2-epimerase
Trp_syntA	PF00290.20	gi|408405662|ref|YP_006863645.1|	-	0.19	10.6	3.3	0.086	11.7	0.2	1.9	2	0	0	2	2	2	0	Tryptophan	synthase	alpha	chain
His_biosynth	PF00977.21	gi|408405663|ref|YP_006863646.1|	-	9.3e-88	293.5	2.5	1.1e-87	293.3	2.5	1.0	1	0	0	1	1	1	1	Histidine	biosynthesis	protein
Dus	PF01207.17	gi|408405663|ref|YP_006863646.1|	-	1.6e-09	37.3	0.2	5.6e-05	22.4	0.0	2.1	1	1	1	2	2	2	2	Dihydrouridine	synthase	(Dus)
NMO	PF03060.15	gi|408405663|ref|YP_006863646.1|	-	3.7e-07	29.8	0.5	0.011	15.2	0.1	2.2	2	0	0	2	2	2	2	Nitronate	monooxygenase
ThiG	PF05690.14	gi|408405663|ref|YP_006863646.1|	-	3.2e-05	23.4	0.3	0.024	13.9	0.1	2.2	2	0	0	2	2	2	2	Thiazole	biosynthesis	protein	ThiG
TMP-TENI	PF02581.17	gi|408405663|ref|YP_006863646.1|	-	0.0003	20.2	0.1	0.35	10.2	0.0	2.3	2	0	0	2	2	2	2	Thiamine	monophosphate	synthase
DHO_dh	PF01180.21	gi|408405663|ref|YP_006863646.1|	-	0.00035	19.9	0.1	0.033	13.4	0.1	2.2	2	0	0	2	2	2	2	Dihydroorotate	dehydrogenase
G3P_antiterm	PF04309.12	gi|408405663|ref|YP_006863646.1|	-	0.0022	17.4	0.2	0.076	12.4	0.1	2.3	2	0	0	2	2	2	1	Glycerol-3-phosphate	responsive	antiterminator
PcrB	PF01884.17	gi|408405663|ref|YP_006863646.1|	-	0.013	15.0	0.1	0.03	13.8	0.1	1.6	1	0	0	1	1	1	0	PcrB	family
Trp_syntA	PF00290.20	gi|408405663|ref|YP_006863646.1|	-	0.025	13.4	0.1	0.038	12.8	0.1	1.2	1	0	0	1	1	1	0	Tryptophan	synthase	alpha	chain
DUF2207	PF09972.9	gi|408405664|ref|YP_006863647.1|	-	0.0049	15.7	0.1	0.0049	15.7	0.1	1.0	1	0	0	1	1	1	1	Predicted	membrane	protein	(DUF2207)
PrgI	PF12666.7	gi|408405664|ref|YP_006863647.1|	-	0.028	15.1	1.5	0.039	14.6	1.5	1.2	1	0	0	1	1	1	0	PrgI	family	protein
DUF2393	PF09624.10	gi|408405664|ref|YP_006863647.1|	-	0.097	12.7	0.9	0.16	12.0	0.0	1.7	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF2393)
CbiQ	PF02361.16	gi|408405664|ref|YP_006863647.1|	-	0.61	9.7	7.6	2.6	7.6	7.6	1.8	1	1	0	1	1	1	0	Cobalt	transport	protein
DUF2852	PF11014.8	gi|408405664|ref|YP_006863647.1|	-	1.1	9.4	4.1	16	5.7	1.6	2.1	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF2852)
Tudor_FRX1	PF18336.1	gi|408405665|ref|YP_006863648.1|	-	0.029	14.3	0.0	0.039	13.9	0.0	1.2	1	0	0	1	1	1	0	Fragile	X	mental	retardation	Tudor	domain
HTH_45	PF14947.6	gi|408405665|ref|YP_006863648.1|	-	0.047	13.7	0.0	0.052	13.5	0.0	1.2	1	0	0	1	1	1	0	Winged	helix-turn-helix
DUF1495	PF07381.11	gi|408405665|ref|YP_006863648.1|	-	0.12	12.3	0.2	1.9	8.3	0.0	2.0	1	1	1	2	2	2	0	Winged	helix	DNA-binding	domain	(DUF1495)
Copper-bind	PF00127.20	gi|408405666|ref|YP_006863649.1|	-	3.5e-09	37.0	0.4	1.2e-07	32.1	0.4	2.1	1	1	0	1	1	1	1	Copper	binding	proteins,	plastocyanin/azurin	family
Cupredoxin_1	PF13473.6	gi|408405666|ref|YP_006863649.1|	-	7.8e-08	32.4	0.0	9.5e-08	32.1	0.0	1.1	1	0	0	1	1	1	1	Cupredoxin-like	domain
Arch_flagellin	PF01917.16	gi|408405666|ref|YP_006863649.1|	-	0.021	15.0	0.6	0.024	14.9	0.6	1.1	1	0	0	1	1	1	0	Archaebacterial	flagellin
DUF4267	PF14087.6	gi|408405667|ref|YP_006863650.1|	-	0.21	11.7	3.9	0.27	11.3	3.9	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4267)
DUF4191	PF13829.6	gi|408405667|ref|YP_006863650.1|	-	3	7.1	5.2	3.7	6.8	5.2	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4191)
Acylphosphatase	PF00708.18	gi|408405669|ref|YP_006863652.1|	-	3.3e-27	94.7	0.2	3.7e-27	94.6	0.2	1.0	1	0	0	1	1	1	1	Acylphosphatase
Orn_Arg_deC_N	PF02784.16	gi|408405670|ref|YP_006863653.1|	-	3.7e-38	131.3	0.0	5.1e-38	130.9	0.0	1.1	1	0	0	1	1	1	1	Pyridoxal-dependent	decarboxylase,	pyridoxal	binding	domain
Orn_DAP_Arg_deC	PF00278.22	gi|408405670|ref|YP_006863653.1|	-	2.1e-09	37.5	0.0	2.7e-09	37.1	0.0	1.4	1	1	0	1	1	1	1	Pyridoxal-dependent	decarboxylase,	C-terminal	sheet	domain
Ala_racemase_N	PF01168.20	gi|408405670|ref|YP_006863653.1|	-	0.13	11.9	0.0	0.36	10.4	0.0	1.7	2	0	0	2	2	2	0	Alanine	racemase,	N-terminal	domain
AAA	PF00004.29	gi|408405671|ref|YP_006863654.1|	-	1.5e-100	332.8	0.1	5.4e-51	172.5	0.0	2.6	3	0	0	3	3	2	2	ATPase	family	associated	with	various	cellular	activities	(AAA)
CDC48_N	PF02359.18	gi|408405671|ref|YP_006863654.1|	-	4.9e-31	106.8	0.4	1.3e-30	105.4	0.4	1.8	1	0	0	1	1	1	1	Cell	division	protein	48	(CDC48),	N-terminal	domain
AAA_lid_3	PF17862.1	gi|408405671|ref|YP_006863654.1|	-	8.5e-24	83.1	0.6	8.1e-13	47.9	0.1	2.9	2	1	0	2	2	2	2	AAA+	lid	domain
AAA_2	PF07724.14	gi|408405671|ref|YP_006863654.1|	-	3.5e-17	63.1	0.0	3.7e-08	33.7	0.0	2.4	2	0	0	2	2	2	2	AAA	domain	(Cdc48	subfamily)
RuvB_N	PF05496.12	gi|408405671|ref|YP_006863654.1|	-	2e-15	56.9	0.0	3.3e-09	36.7	0.0	2.8	3	0	0	3	3	2	2	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
AAA_16	PF13191.6	gi|408405671|ref|YP_006863654.1|	-	8.4e-15	55.6	0.6	2.4e-06	28.0	0.0	3.9	3	2	1	4	4	3	2	AAA	ATPase	domain
TIP49	PF06068.13	gi|408405671|ref|YP_006863654.1|	-	7.4e-11	41.8	0.1	0.00016	21.0	0.0	2.4	2	0	0	2	2	2	2	TIP49	P-loop	domain
AAA_33	PF13671.6	gi|408405671|ref|YP_006863654.1|	-	1.9e-10	41.1	0.0	0.00056	20.1	0.0	2.6	2	1	0	2	2	2	2	AAA	domain
AAA_5	PF07728.14	gi|408405671|ref|YP_006863654.1|	-	3.2e-10	40.1	1.5	0.00018	21.5	0.1	4.1	2	2	0	2	2	2	2	AAA	domain	(dynein-related	subfamily)
AAA_22	PF13401.6	gi|408405671|ref|YP_006863654.1|	-	7.5e-10	39.2	1.8	0.002	18.4	0.1	4.5	3	2	1	4	4	3	2	AAA	domain
AAA_14	PF13173.6	gi|408405671|ref|YP_006863654.1|	-	2.1e-09	37.5	0.0	0.00013	22.0	0.0	2.4	2	0	0	2	2	2	2	AAA	domain
CDC48_2	PF02933.17	gi|408405671|ref|YP_006863654.1|	-	4.9e-09	35.8	0.1	1.3e-08	34.5	0.1	1.8	1	0	0	1	1	1	1	Cell	division	protein	48	(CDC48),	domain	2
Sigma54_activat	PF00158.26	gi|408405671|ref|YP_006863654.1|	-	5.1e-08	32.8	0.3	0.028	14.1	0.0	3.5	3	1	0	3	3	3	2	Sigma-54	interaction	domain
IstB_IS21	PF01695.17	gi|408405671|ref|YP_006863654.1|	-	1.3e-07	31.5	0.0	0.0073	16.1	0.0	2.3	2	0	0	2	2	2	2	IstB-like	ATP	binding	protein
Bac_DnaA	PF00308.18	gi|408405671|ref|YP_006863654.1|	-	7.1e-07	29.3	0.0	0.00076	19.4	0.0	2.4	2	0	0	2	2	2	1	Bacterial	dnaA	protein
ATPase	PF06745.13	gi|408405671|ref|YP_006863654.1|	-	1.4e-06	27.8	0.8	0.12	11.8	0.0	3.7	2	1	1	3	3	3	2	KaiC
RNA_helicase	PF00910.22	gi|408405671|ref|YP_006863654.1|	-	1.8e-06	28.3	0.0	0.042	14.2	0.0	2.8	2	0	0	2	2	2	2	RNA	helicase
AAA_7	PF12775.7	gi|408405671|ref|YP_006863654.1|	-	1.9e-06	27.5	0.1	0.037	13.5	0.0	2.6	2	1	0	2	2	2	2	P-loop	containing	dynein	motor	region
Mg_chelatase	PF01078.21	gi|408405671|ref|YP_006863654.1|	-	7.1e-06	25.6	1.8	0.039	13.3	0.1	2.6	2	0	0	2	2	2	2	Magnesium	chelatase,	subunit	ChlI
TsaE	PF02367.17	gi|408405671|ref|YP_006863654.1|	-	8.4e-06	25.8	0.0	0.18	11.8	0.0	2.5	2	0	0	2	2	2	2	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
AAA_28	PF13521.6	gi|408405671|ref|YP_006863654.1|	-	1.1e-05	25.8	0.2	0.029	14.6	0.0	2.8	3	0	0	3	3	2	2	AAA	domain
AAA_24	PF13479.6	gi|408405671|ref|YP_006863654.1|	-	1.6e-05	24.7	0.0	0.024	14.4	0.0	2.5	2	0	0	2	2	2	2	AAA	domain
PhoH	PF02562.16	gi|408405671|ref|YP_006863654.1|	-	1.8e-05	24.3	0.5	0.12	11.8	0.1	2.4	2	0	0	2	2	2	2	PhoH-like	protein
Zeta_toxin	PF06414.12	gi|408405671|ref|YP_006863654.1|	-	3.2e-05	23.3	0.1	0.15	11.3	0.0	2.6	2	0	0	2	2	2	2	Zeta	toxin
AAA_18	PF13238.6	gi|408405671|ref|YP_006863654.1|	-	3.3e-05	24.4	0.0	0.033	14.7	0.0	2.7	2	0	0	2	2	2	1	AAA	domain
NACHT	PF05729.12	gi|408405671|ref|YP_006863654.1|	-	6.1e-05	23.0	0.1	1.1	9.1	0.1	3.5	4	0	0	4	4	3	2	NACHT	domain
DUF815	PF05673.13	gi|408405671|ref|YP_006863654.1|	-	9.3e-05	21.7	0.0	0.047	12.9	0.0	2.4	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF815)
ABC_tran	PF00005.27	gi|408405671|ref|YP_006863654.1|	-	0.00012	22.6	0.0	0.89	10.1	0.0	2.4	2	0	0	2	2	2	2	ABC	transporter
ATPase_2	PF01637.18	gi|408405671|ref|YP_006863654.1|	-	0.00018	21.5	0.1	0.03	14.2	0.0	3.1	3	1	0	3	3	2	1	ATPase	domain	predominantly	from	Archaea
NB-ARC	PF00931.22	gi|408405671|ref|YP_006863654.1|	-	0.00036	19.8	0.1	0.43	9.7	0.0	2.5	2	0	0	2	2	2	2	NB-ARC	domain
DUF2075	PF09848.9	gi|408405671|ref|YP_006863654.1|	-	0.0007	18.9	0.0	0.38	9.9	0.0	2.3	2	0	0	2	2	2	1	Uncharacterized	conserved	protein	(DUF2075)
AAA_25	PF13481.6	gi|408405671|ref|YP_006863654.1|	-	0.00084	19.0	5.7	1.3	8.6	0.2	3.7	2	2	1	3	3	3	1	AAA	domain
Cytidylate_kin	PF02224.18	gi|408405671|ref|YP_006863654.1|	-	0.0011	18.8	0.1	1	9.0	0.0	2.5	2	0	0	2	2	2	1	Cytidylate	kinase
AAA_3	PF07726.11	gi|408405671|ref|YP_006863654.1|	-	0.0012	18.7	0.0	0.53	10.1	0.0	2.5	2	0	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_30	PF13604.6	gi|408405671|ref|YP_006863654.1|	-	0.0018	18.0	0.6	1.9	8.2	0.0	2.6	2	0	0	2	2	2	1	AAA	domain
AAA_11	PF13086.6	gi|408405671|ref|YP_006863654.1|	-	0.0025	17.6	0.0	0.65	9.7	0.0	2.3	2	0	0	2	2	2	1	AAA	domain
Parvo_NS1	PF01057.17	gi|408405671|ref|YP_006863654.1|	-	0.0029	16.7	0.1	0.31	10.1	0.0	2.2	2	0	0	2	2	2	1	Parvovirus	non-structural	protein	NS1
Sigma54_activ_2	PF14532.6	gi|408405671|ref|YP_006863654.1|	-	0.0058	16.7	0.0	1.9	8.6	0.0	2.7	2	0	0	2	2	2	1	Sigma-54	interaction	domain
TniB	PF05621.11	gi|408405671|ref|YP_006863654.1|	-	0.016	14.7	0.0	6.6	6.1	0.0	3.0	3	0	0	3	3	3	0	Bacterial	TniB	protein
AFG1_ATPase	PF03969.16	gi|408405671|ref|YP_006863654.1|	-	0.016	14.1	0.1	4.1	6.2	0.0	2.6	3	0	0	3	3	3	0	AFG1-like	ATPase
AAA_17	PF13207.6	gi|408405671|ref|YP_006863654.1|	-	0.017	15.6	0.0	1.1	9.7	0.0	3.0	2	0	0	2	2	2	0	AAA	domain
AAA_29	PF13555.6	gi|408405671|ref|YP_006863654.1|	-	0.04	13.7	0.4	7.3	6.4	0.1	2.4	2	0	0	2	2	2	0	P-loop	containing	region	of	AAA	domain
Guanylate_kin	PF00625.21	gi|408405671|ref|YP_006863654.1|	-	0.044	13.5	0.2	33	4.1	0.0	3.6	2	1	1	3	3	3	0	Guanylate	kinase
ATP-synt_ab	PF00006.25	gi|408405671|ref|YP_006863654.1|	-	0.047	13.3	0.1	4.8	6.8	0.0	2.6	3	0	0	3	3	2	0	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
NTPase_1	PF03266.15	gi|408405671|ref|YP_006863654.1|	-	0.048	13.6	1.9	11	5.9	0.0	3.8	3	1	1	4	4	3	0	NTPase
ResIII	PF04851.15	gi|408405671|ref|YP_006863654.1|	-	0.056	13.4	0.0	18	5.3	0.0	2.5	2	1	0	2	2	2	0	Type	III	restriction	enzyme,	res	subunit
PduV-EutP	PF10662.9	gi|408405671|ref|YP_006863654.1|	-	0.063	13.0	0.0	22	4.8	0.0	2.9	3	0	0	3	3	3	0	Ethanolamine	utilisation	-	propanediol	utilisation
T2SSE	PF00437.20	gi|408405671|ref|YP_006863654.1|	-	0.072	12.1	0.1	7.8	5.5	0.0	2.3	2	0	0	2	2	2	0	Type	II/IV	secretion	system	protein
Rad17	PF03215.15	gi|408405671|ref|YP_006863654.1|	-	0.094	12.6	0.1	53	3.6	0.0	3.1	2	1	1	3	3	3	0	Rad17	P-loop	domain
Viral_helicase1	PF01443.18	gi|408405671|ref|YP_006863654.1|	-	0.094	12.4	0.0	4.6	6.9	0.0	2.3	2	0	0	2	2	2	0	Viral	(Superfamily	1)	RNA	helicase
SKI	PF01202.22	gi|408405671|ref|YP_006863654.1|	-	0.1	12.7	0.1	8.4	6.5	0.0	2.7	3	0	0	3	3	2	0	Shikimate	kinase
CPT	PF07931.12	gi|408405671|ref|YP_006863654.1|	-	0.14	12.0	0.0	16	5.3	0.0	2.6	2	0	0	2	2	2	0	Chloramphenicol	phosphotransferase-like	protein
IPT	PF01745.16	gi|408405671|ref|YP_006863654.1|	-	0.19	11.1	0.2	12	5.1	0.0	2.4	2	0	0	2	2	2	0	Isopentenyl	transferase
DEAD	PF00270.29	gi|408405671|ref|YP_006863654.1|	-	0.3	10.9	1.6	24	4.6	0.1	3.5	3	1	0	4	4	3	0	DEAD/DEAH	box	helicase
AAA_19	PF13245.6	gi|408405671|ref|YP_006863654.1|	-	0.46	10.8	4.4	3.5	7.9	0.1	3.2	3	1	1	4	4	2	0	AAA	domain
ECR1_N	PF14382.6	gi|408405672|ref|YP_006863655.1|	-	2.6e-05	23.9	0.4	5.8e-05	22.8	0.4	1.7	1	0	0	1	1	1	1	Exosome	complex	exonuclease	RRP4	N-terminal	region
EXOSC1	PF10447.9	gi|408405672|ref|YP_006863655.1|	-	0.0017	19.0	0.1	1	10.0	0.1	2.5	1	1	1	2	2	2	2	Exosome	component	EXOSC1/CSL4
DNA_RNApol_7kD	PF03604.13	gi|408405672|ref|YP_006863655.1|	-	0.45	10.2	2.0	1.3	8.7	2.0	1.7	1	0	0	1	1	1	0	DNA	directed	RNA	polymerase,	7	kDa	subunit
PDT	PF00800.18	gi|408405673|ref|YP_006863656.1|	-	6.1e-62	208.7	0.0	7.8e-62	208.3	0.0	1.1	1	0	0	1	1	1	1	Prephenate	dehydratase
ACT	PF01842.25	gi|408405673|ref|YP_006863656.1|	-	2.1e-09	37.0	0.0	3.8e-09	36.1	0.0	1.4	1	0	0	1	1	1	1	ACT	domain
Copper-bind	PF00127.20	gi|408405674|ref|YP_006863657.1|	-	1.9e-09	37.9	0.0	5.1e-09	36.5	0.0	1.8	1	0	0	1	1	1	1	Copper	binding	proteins,	plastocyanin/azurin	family
Cupredoxin_1	PF13473.6	gi|408405674|ref|YP_006863657.1|	-	1e-06	28.8	0.0	2.3e-06	27.6	0.0	1.7	1	0	0	1	1	1	1	Cupredoxin-like	domain
DUF1007	PF06226.13	gi|408405674|ref|YP_006863657.1|	-	0.022	14.8	0.0	0.14	12.1	0.0	2.0	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1007)
DUF4199	PF13858.6	gi|408405674|ref|YP_006863657.1|	-	0.12	12.8	0.0	0.17	12.3	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF4199)
WBP-1	PF11669.8	gi|408405675|ref|YP_006863658.1|	-	0.042	14.5	2.0	0.071	13.8	2.0	1.4	1	0	0	1	1	1	0	WW	domain-binding	protein	1
EMP24_GP25L	PF01105.24	gi|408405676|ref|YP_006863659.1|	-	0.003	17.5	0.0	0.0041	17.1	0.0	1.2	1	0	0	1	1	1	1	emp24/gp25L/p24	family/GOLD
DUF1533	PF07550.11	gi|408405676|ref|YP_006863659.1|	-	0.02	14.8	0.3	0.055	13.4	0.1	1.8	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF1533)
SdrD_B	PF17210.3	gi|408405676|ref|YP_006863659.1|	-	0.054	13.7	0.1	0.075	13.3	0.1	1.2	1	0	0	1	1	1	0	SdrD	B-like	domain
Glyco_hydro_43	PF04616.14	gi|408405677|ref|YP_006863660.1|	-	0.0014	18.0	0.1	0.0035	16.7	0.1	1.8	1	0	0	1	1	1	1	Glycosyl	hydrolases	family	43
DUF5016	PF16408.5	gi|408405677|ref|YP_006863660.1|	-	0.12	12.4	0.9	6.7	6.7	0.1	3.2	3	1	0	3	3	3	0	Domain	of	unknown	function	(DUF5016)
IMPDH	PF00478.25	gi|408405679|ref|YP_006863662.1|	-	2.4e-150	500.3	8.1	2.8e-150	500.1	8.1	1.0	1	0	0	1	1	1	1	IMP	dehydrogenase	/	GMP	reductase	domain
CBS	PF00571.28	gi|408405679|ref|YP_006863662.1|	-	7.3e-25	87.2	0.5	9.5e-11	42.0	0.0	3.1	3	0	0	3	3	2	2	CBS	domain
NMO	PF03060.15	gi|408405679|ref|YP_006863662.1|	-	5e-14	52.4	9.6	2.5e-10	40.3	4.6	2.5	1	1	0	2	2	2	2	Nitronate	monooxygenase
His_biosynth	PF00977.21	gi|408405679|ref|YP_006863662.1|	-	3.6e-08	33.2	1.5	0.00024	20.7	0.1	2.5	1	1	1	2	2	2	2	Histidine	biosynthesis	protein
FMN_dh	PF01070.18	gi|408405679|ref|YP_006863662.1|	-	3.5e-07	29.6	10.9	3.5e-07	29.6	10.9	2.8	3	1	0	3	3	3	1	FMN-dependent	dehydrogenase
DHO_dh	PF01180.21	gi|408405679|ref|YP_006863662.1|	-	0.00023	20.5	4.4	0.00081	18.7	0.5	2.5	1	1	1	2	2	2	1	Dihydroorotate	dehydrogenase
IGPS	PF00218.21	gi|408405679|ref|YP_006863662.1|	-	0.0049	16.1	0.6	2.7	7.1	0.0	2.9	3	0	0	3	3	3	2	Indole-3-glycerol	phosphate	synthase
Radical_SAM	PF04055.21	gi|408405679|ref|YP_006863662.1|	-	0.007	16.8	0.1	5.8	7.3	0.0	2.9	2	1	1	3	3	3	2	Radical	SAM	superfamily
DUF561	PF04481.12	gi|408405679|ref|YP_006863662.1|	-	0.012	14.8	3.7	0.47	9.6	0.7	2.3	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF561)
Glu_synthase	PF01645.17	gi|408405679|ref|YP_006863662.1|	-	0.019	14.1	2.4	0.035	13.2	2.4	1.4	1	0	0	1	1	1	0	Conserved	region	in	glutamate	synthase
ThiG	PF05690.14	gi|408405679|ref|YP_006863662.1|	-	0.022	14.1	3.5	0.023	14.0	0.7	2.2	1	1	1	2	2	2	0	Thiazole	biosynthesis	protein	ThiG
PEP_mutase	PF13714.6	gi|408405679|ref|YP_006863662.1|	-	0.035	13.6	0.3	0.035	13.6	0.3	2.4	3	0	0	3	3	3	0	Phosphoenolpyruvate	phosphomutase
Dus	PF01207.17	gi|408405679|ref|YP_006863662.1|	-	0.036	13.2	3.4	0.25	10.4	0.0	2.9	3	0	0	3	3	3	0	Dihydrouridine	synthase	(Dus)
AF0941-like	PF14591.6	gi|408405679|ref|YP_006863662.1|	-	0.056	14.0	1.2	0.12	13.0	0.2	2.1	2	0	0	2	2	2	0	AF0941-like
G3P_antiterm	PF04309.12	gi|408405679|ref|YP_006863662.1|	-	0.082	12.3	4.6	0.19	11.1	0.1	3.2	3	1	1	4	4	4	0	Glycerol-3-phosphate	responsive	antiterminator
DUF2922	PF11148.8	gi|408405679|ref|YP_006863662.1|	-	0.12	12.1	0.2	1.9	8.3	0.0	2.7	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2922)
Aldolase	PF01081.19	gi|408405679|ref|YP_006863662.1|	-	1.5	8.2	5.9	0.92	8.9	0.8	2.8	2	1	1	3	3	3	0	KDPG	and	KHG	aldolase
Pterin_bind	PF00809.22	gi|408405680|ref|YP_006863663.1|	-	1.1e-46	159.5	1.9	2.6e-46	158.3	1.9	1.6	1	1	0	1	1	1	1	Pterin	binding	enzyme
4HFCP_synth	PF04476.13	gi|408405680|ref|YP_006863663.1|	-	0.00087	19.1	0.9	0.0013	18.5	0.9	1.3	1	0	0	1	1	1	1	4-HFC-P	synthase
Abhydrolase_1	PF00561.20	gi|408405681|ref|YP_006863664.1|	-	4.1e-26	92.2	0.0	8.1e-24	84.6	0.0	2.1	1	1	0	2	2	2	1	alpha/beta	hydrolase	fold
Abhydrolase_6	PF12697.7	gi|408405681|ref|YP_006863664.1|	-	5.9e-17	63.0	0.0	6.9e-17	62.8	0.0	1.0	1	0	0	1	1	1	1	Alpha/beta	hydrolase	family
Hydrolase_4	PF12146.8	gi|408405681|ref|YP_006863664.1|	-	6.6e-13	48.5	0.2	8.1e-13	48.2	0.2	1.3	1	1	0	1	1	1	1	Serine	aminopeptidase,	S33
Ndr	PF03096.14	gi|408405681|ref|YP_006863664.1|	-	4.8e-09	35.3	0.0	6.6e-09	34.9	0.0	1.1	1	0	0	1	1	1	1	Ndr	family
Abhydrolase_5	PF12695.7	gi|408405681|ref|YP_006863664.1|	-	2.9e-07	30.4	0.0	1.4e-05	24.9	0.0	2.2	2	0	0	2	2	2	1	Alpha/beta	hydrolase	family
Peptidase_S9	PF00326.21	gi|408405681|ref|YP_006863664.1|	-	0.00017	21.2	0.0	0.0013	18.3	0.0	2.0	2	0	0	2	2	2	1	Prolyl	oligopeptidase	family
Thioesterase	PF00975.20	gi|408405681|ref|YP_006863664.1|	-	0.00018	21.7	0.0	0.00022	21.4	0.0	1.3	1	0	0	1	1	1	1	Thioesterase	domain
PGAP1	PF07819.13	gi|408405681|ref|YP_006863664.1|	-	0.00032	20.5	0.0	0.00041	20.1	0.0	1.3	1	0	0	1	1	1	1	PGAP1-like	protein
LIDHydrolase	PF10230.9	gi|408405681|ref|YP_006863664.1|	-	0.00057	19.5	0.0	0.0008	19.0	0.0	1.2	1	0	0	1	1	1	1	Lipid-droplet	associated	hydrolase
BAAT_C	PF08840.11	gi|408405681|ref|YP_006863664.1|	-	0.00058	19.8	0.0	0.001	19.1	0.0	1.3	1	0	0	1	1	1	1	BAAT	/	Acyl-CoA	thioester	hydrolase	C	terminal
Abhydrolase_8	PF06259.12	gi|408405681|ref|YP_006863664.1|	-	0.0015	18.2	0.0	0.0032	17.1	0.0	1.5	1	0	0	1	1	1	1	Alpha/beta	hydrolase
UPF0227	PF05728.12	gi|408405681|ref|YP_006863664.1|	-	0.003	17.5	0.0	0.0095	15.9	0.0	1.9	1	1	0	1	1	1	1	Uncharacterised	protein	family	(UPF0227)
Esterase	PF00756.20	gi|408405681|ref|YP_006863664.1|	-	0.0041	16.8	0.0	0.0098	15.6	0.0	1.4	1	1	0	1	1	1	1	Putative	esterase
Lipase_3	PF01764.25	gi|408405681|ref|YP_006863664.1|	-	0.0064	16.4	0.0	0.015	15.2	0.0	1.6	1	0	0	1	1	1	1	Lipase	(class	3)
Peptidase_S15	PF02129.18	gi|408405681|ref|YP_006863664.1|	-	0.0088	15.7	0.0	0.012	15.2	0.0	1.4	1	1	0	1	1	1	1	X-Pro	dipeptidyl-peptidase	(S15	family)
DLH	PF01738.18	gi|408405681|ref|YP_006863664.1|	-	0.022	14.3	0.0	0.59	9.6	0.0	2.3	2	0	0	2	2	2	0	Dienelactone	hydrolase	family
DUF1057	PF06342.12	gi|408405681|ref|YP_006863664.1|	-	0.022	13.8	0.3	0.051	12.6	0.1	1.6	2	1	0	2	2	2	0	Alpha/beta	hydrolase	of	unknown	function	(DUF1057)
Ser_hydrolase	PF06821.13	gi|408405681|ref|YP_006863664.1|	-	0.031	14.1	0.0	0.068	13.0	0.0	1.6	2	0	0	2	2	2	0	Serine	hydrolase
DUF915	PF06028.11	gi|408405681|ref|YP_006863664.1|	-	0.071	12.4	0.1	0.14	11.5	0.0	1.5	2	0	0	2	2	2	0	Alpha/beta	hydrolase	of	unknown	function	(DUF915)
DUF676	PF05057.14	gi|408405681|ref|YP_006863664.1|	-	0.11	12.0	0.1	0.19	11.2	0.1	1.4	1	0	0	1	1	1	0	Putative	serine	esterase	(DUF676)
PvlArgDC	PF01862.16	gi|408405682|ref|YP_006863665.1|	-	1.3e-58	197.3	0.0	1.5e-58	197.2	0.0	1.0	1	0	0	1	1	1	1	Pyruvoyl-dependent	arginine	decarboxylase	(PvlArgDC)
IF3_N	PF05198.16	gi|408405682|ref|YP_006863665.1|	-	0.064	13.5	0.0	0.12	12.7	0.0	1.4	1	0	0	1	1	1	0	Translation	initiation	factor	IF-3,	N-terminal	domain
MG2	PF01835.19	gi|408405683|ref|YP_006863666.1|	-	0.003	18.0	0.0	0.0051	17.2	0.0	1.4	1	0	0	1	1	1	1	MG2	domain
EutN_CcmL	PF03319.13	gi|408405683|ref|YP_006863666.1|	-	0.0058	17.2	1.4	1.9	9.1	0.5	2.3	2	0	0	2	2	2	2	Ethanolamine	utilisation	protein	EutN/carboxysome
MliC	PF09864.9	gi|408405683|ref|YP_006863666.1|	-	0.0089	15.9	0.0	0.016	15.1	0.0	1.5	1	0	0	1	1	1	1	Membrane-bound	lysozyme-inhibitor	of	c-type	lysozyme
ATG27	PF09451.10	gi|408405683|ref|YP_006863666.1|	-	0.079	12.8	0.0	0.12	12.2	0.0	1.2	1	0	0	1	1	1	0	Autophagy-related	protein	27
ADH_N	PF08240.12	gi|408405685|ref|YP_006863668.1|	-	1.4e-29	102.2	1.7	2.6e-29	101.3	0.6	1.9	2	0	0	2	2	2	1	Alcohol	dehydrogenase	GroES-like	domain
ADH_N_assoc	PF13823.6	gi|408405685|ref|YP_006863668.1|	-	1.9e-09	37.3	3.5	4.8e-09	36.0	3.5	1.8	1	0	0	1	1	1	1	Alcohol	dehydrogenase	GroES-associated
ADH_zinc_N	PF00107.26	gi|408405685|ref|YP_006863668.1|	-	2e-06	27.8	0.1	6.4e-06	26.2	0.0	1.8	2	0	0	2	2	2	1	Zinc-binding	dehydrogenase
HI0933_like	PF03486.14	gi|408405685|ref|YP_006863668.1|	-	0.0037	16.0	0.0	0.0051	15.6	0.0	1.1	1	0	0	1	1	1	1	HI0933-like	protein
AlaDh_PNT_C	PF01262.21	gi|408405685|ref|YP_006863668.1|	-	0.0056	16.0	0.1	0.0095	15.3	0.1	1.4	1	0	0	1	1	1	1	Alanine	dehydrogenase/PNT,	C-terminal	domain
DUF892	PF05974.12	gi|408405686|ref|YP_006863669.1|	-	1.3e-14	54.6	12.4	4.9e-14	52.6	12.4	1.7	1	1	0	1	1	1	1	Domain	of	unknown	function	(DUF892)
RB_A	PF01858.17	gi|408405686|ref|YP_006863669.1|	-	0.007	16.2	1.5	0.013	15.3	0.8	1.7	1	1	1	2	2	2	1	Retinoblastoma-associated	protein	A	domain
DivIC	PF04977.15	gi|408405686|ref|YP_006863669.1|	-	0.89	9.4	0.1	0.89	9.4	0.1	2.5	3	0	0	3	3	3	0	Septum	formation	initiator
DUF4760	PF15956.5	gi|408405687|ref|YP_006863670.1|	-	1.1e-06	28.8	0.2	1.3e-06	28.6	0.2	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4760)
Ferredoxin_N	PF16947.5	gi|408405687|ref|YP_006863670.1|	-	0.11	12.6	0.7	13	5.9	0.1	2.8	2	1	0	2	2	2	0	N-terminal	region	of	4Fe-4S	ferredoxin	iron-sulfur	binding
Ferritin	PF00210.24	gi|408405689|ref|YP_006863672.1|	-	1.1e-31	109.7	1.8	1.3e-31	109.5	1.8	1.0	1	0	0	1	1	1	1	Ferritin-like	domain
HrpB2	PF09487.10	gi|408405689|ref|YP_006863672.1|	-	0.0085	16.5	0.4	0.019	15.4	0.3	1.6	1	1	1	2	2	2	1	Bacterial	type	III	secretion	protein	(HrpB2)
DASH_Spc34	PF08657.10	gi|408405689|ref|YP_006863672.1|	-	0.055	13.3	0.6	0.071	12.9	0.6	1.2	1	0	0	1	1	1	0	DASH	complex	subunit	Spc34
NYD-SP28	PF14772.6	gi|408405689|ref|YP_006863672.1|	-	3.8	7.6	6.7	1.5	8.9	2.3	2.6	2	1	1	3	3	3	0	Sperm	tail
CBS	PF00571.28	gi|408405690|ref|YP_006863673.1|	-	6.3e-16	58.6	0.6	1.6e-06	28.5	0.1	2.5	2	0	0	2	2	2	2	CBS	domain
Peptidase_M50	PF02163.22	gi|408405690|ref|YP_006863673.1|	-	3.7e-15	55.9	8.7	1.3e-07	31.2	0.0	3.3	2	1	1	3	3	3	2	Peptidase	family	M50
Peptidase_M50B	PF13398.6	gi|408405690|ref|YP_006863673.1|	-	0.0026	17.4	14.1	0.0056	16.3	1.7	2.8	2	2	0	2	2	2	2	Peptidase	M50B-like
DUF3267	PF11667.8	gi|408405690|ref|YP_006863673.1|	-	0.0056	17.0	0.7	0.0056	17.0	0.7	2.9	3	0	0	3	3	3	1	Putative	zincin	peptidase
zf-met	PF12874.7	gi|408405691|ref|YP_006863674.1|	-	0.0028	18.0	0.3	0.0072	16.7	0.0	1.7	2	0	0	2	2	2	1	Zinc-finger	of	C2H2	type
zf-C2H2_4	PF13894.6	gi|408405691|ref|YP_006863674.1|	-	0.0075	17.0	0.1	0.014	16.2	0.1	1.5	1	0	0	1	1	1	1	C2H2-type	zinc	finger
zf-C2H2_2	PF12756.7	gi|408405691|ref|YP_006863674.1|	-	0.01	16.2	0.0	0.012	15.9	0.0	1.2	1	0	0	1	1	1	1	C2H2	type	zinc-finger	(2	copies)
Rad50_zn_hook	PF04423.14	gi|408405691|ref|YP_006863674.1|	-	0.011	15.5	0.1	0.032	14.1	0.1	1.8	1	1	0	1	1	1	0	Rad50	zinc	hook	motif
zf-C2H2_6	PF13912.6	gi|408405691|ref|YP_006863674.1|	-	0.021	14.8	0.1	0.035	14.1	0.1	1.4	1	0	0	1	1	1	0	C2H2-type	zinc	finger
zf-C2H2_jaz	PF12171.8	gi|408405691|ref|YP_006863674.1|	-	0.029	14.6	0.1	0.052	13.8	0.1	1.5	1	1	0	1	1	1	0	Zinc-finger	double-stranded	RNA-binding
Glyco_transf_10	PF00852.19	gi|408405691|ref|YP_006863674.1|	-	0.073	12.8	0.0	0.097	12.4	0.0	1.2	1	0	0	1	1	1	0	Glycosyltransferase	family	10	(fucosyltransferase)	C-term
zf-C2H2	PF00096.26	gi|408405691|ref|YP_006863674.1|	-	0.16	12.5	0.4	0.33	11.5	0.1	1.7	2	0	0	2	2	2	0	Zinc	finger,	C2H2	type
DUF5524	PF17662.1	gi|408405692|ref|YP_006863675.1|	-	0.14	11.5	0.0	0.15	11.4	0.0	1.1	1	0	0	1	1	1	0	Family	of	unknown	function	(DUF5524)
DUF1326	PF07040.11	gi|408405695|ref|YP_006863678.1|	-	1.1e-33	116.7	0.4	1.3e-33	116.5	0.4	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1326)
zf_C2H2_ZHX	PF18387.1	gi|408405697|ref|YP_006863680.1|	-	3.3e-06	26.6	0.1	3.5e-06	26.6	0.1	1.1	1	0	0	1	1	1	1	Zinc-fingers	and	homeoboxes	C2H2	finger	domain
zf-Mss51	PF13824.6	gi|408405697|ref|YP_006863680.1|	-	0.0015	18.5	0.1	0.0016	18.5	0.1	1.1	1	0	0	1	1	1	1	Zinc-finger	of	mitochondrial	splicing	suppressor	51
CpXC	PF14353.6	gi|408405697|ref|YP_006863680.1|	-	0.013	15.5	0.0	0.013	15.5	0.0	1.1	1	0	0	1	1	1	0	CpXC	protein
zf-C2H2	PF00096.26	gi|408405697|ref|YP_006863680.1|	-	0.014	15.8	0.2	0.02	15.3	0.2	1.3	1	0	0	1	1	1	0	Zinc	finger,	C2H2	type
zf-C2H2_3rep	PF18868.1	gi|408405697|ref|YP_006863680.1|	-	0.014	16.1	0.2	0.019	15.6	0.1	1.3	1	1	0	1	1	1	0	Zinc	finger	C2H2-type,	3	repeats
zinc_ribbon_4	PF13717.6	gi|408405697|ref|YP_006863680.1|	-	0.024	14.6	0.0	0.035	14.0	0.0	1.2	1	0	0	1	1	1	0	zinc-ribbon	domain
zf-H2C2_2	PF13465.6	gi|408405697|ref|YP_006863680.1|	-	0.18	12.3	1.2	3	8.4	0.4	2.2	2	0	0	2	2	2	0	Zinc-finger	double	domain
Robl_LC7	PF03259.17	gi|408405699|ref|YP_006863682.1|	-	0.048	13.4	0.1	0.11	12.3	0.1	1.6	1	1	0	1	1	1	0	Roadblock/LC7	domain
zf-FCS	PF06467.14	gi|408405700|ref|YP_006863683.1|	-	0.0032	17.4	0.4	0.011	15.6	0.4	1.8	1	1	0	1	1	1	1	MYM-type	Zinc	finger	with	FCS	sequence	motif
DUF2116	PF09889.9	gi|408405700|ref|YP_006863683.1|	-	0.12	12.4	0.5	1.1	9.3	0.0	2.0	2	0	0	2	2	2	0	Uncharacterized	protein	containing	a	Zn-ribbon	(DUF2116)
Zn_Tnp_IS1595	PF12760.7	gi|408405702|ref|YP_006863685.1|	-	0.07	13.1	1.6	0.1	12.6	1.6	1.3	1	0	0	1	1	1	0	Transposase	zinc-ribbon	domain
OrfB_Zn_ribbon	PF07282.11	gi|408405702|ref|YP_006863685.1|	-	0.089	12.7	1.1	0.11	12.4	1.1	1.2	1	0	0	1	1	1	0	Putative	transposase	DNA-binding	domain
Rdx	PF10262.9	gi|408405702|ref|YP_006863685.1|	-	0.13	12.5	0.4	2.4	8.4	0.1	2.1	1	1	1	2	2	2	0	Rdx	family
zf-ribbon_3	PF13248.6	gi|408405702|ref|YP_006863685.1|	-	0.15	11.5	4.1	1.7	8.1	0.4	2.8	3	0	0	3	3	3	0	zinc-ribbon	domain
Zn-ribbon_8	PF09723.10	gi|408405702|ref|YP_006863685.1|	-	0.43	10.7	2.7	1.1	9.4	2.4	1.8	1	1	1	2	2	2	0	Zinc	ribbon	domain
Glyoxalase	PF00903.25	gi|408405703|ref|YP_006863686.1|	-	9e-25	87.3	1.1	2.1e-12	47.4	0.1	2.2	2	0	0	2	2	2	2	Glyoxalase/Bleomycin	resistance	protein/Dioxygenase	superfamily
Glyoxalase_4	PF13669.6	gi|408405703|ref|YP_006863686.1|	-	4e-08	33.5	0.0	0.011	15.9	0.0	3.1	2	1	0	2	2	2	2	Glyoxalase/Bleomycin	resistance	protein/Dioxygenase	superfamily
Glyoxalase_6	PF18029.1	gi|408405703|ref|YP_006863686.1|	-	0.00022	22.0	0.2	0.56	11.0	0.0	2.9	1	1	2	3	3	3	2	Glyoxalase-like	domain
Glyoxalase_2	PF12681.7	gi|408405703|ref|YP_006863686.1|	-	0.0027	17.6	0.1	2	8.4	0.0	2.8	3	0	0	3	3	3	2	Glyoxalase-like	domain
Glyoxalase_3	PF13468.6	gi|408405703|ref|YP_006863686.1|	-	0.0075	16.4	0.1	0.73	9.9	0.2	2.6	2	1	0	2	2	2	1	Glyoxalase-like	domain
TPR_1	PF00515.28	gi|408405703|ref|YP_006863686.1|	-	0.012	15.4	0.0	0.075	12.9	0.0	2.1	2	0	0	2	2	2	0	Tetratricopeptide	repeat
CppA_N	PF14506.6	gi|408405703|ref|YP_006863686.1|	-	0.02	15.0	0.0	0.93	9.6	0.0	2.2	2	0	0	2	2	2	0	CppA	N-terminal
TPR_8	PF13181.6	gi|408405703|ref|YP_006863686.1|	-	0.059	13.6	0.0	0.14	12.4	0.0	1.7	1	0	0	1	1	1	0	Tetratricopeptide	repeat
TPR_2	PF07719.17	gi|408405703|ref|YP_006863686.1|	-	0.097	12.8	0.0	0.31	11.3	0.0	1.8	2	0	0	2	2	2	0	Tetratricopeptide	repeat
ADH_zinc_N	PF00107.26	gi|408405704|ref|YP_006863687.1|	-	2.5e-34	118.1	1.4	4.5e-34	117.2	1.4	1.4	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
ADH_zinc_N_2	PF13602.6	gi|408405704|ref|YP_006863687.1|	-	1.3e-22	81.3	0.0	2.6e-22	80.3	0.0	1.5	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
ADH_N	PF08240.12	gi|408405704|ref|YP_006863687.1|	-	5.5e-18	64.9	5.7	4.4e-17	61.9	5.7	2.1	1	1	0	1	1	1	1	Alcohol	dehydrogenase	GroES-like	domain
adh_short	PF00106.25	gi|408405704|ref|YP_006863687.1|	-	0.0082	15.6	1.5	0.018	14.5	1.4	1.7	1	1	0	1	1	1	1	short	chain	dehydrogenase
TrkA_N	PF02254.18	gi|408405704|ref|YP_006863687.1|	-	0.023	15.0	0.0	0.05	13.9	0.0	1.6	1	0	0	1	1	1	0	TrkA-N	domain
EAL	PF00563.20	gi|408405704|ref|YP_006863687.1|	-	0.046	13.2	0.0	6.6	6.2	0.0	2.2	1	1	1	2	2	2	0	EAL	domain
Eno-Rase_NADH_b	PF12242.8	gi|408405704|ref|YP_006863687.1|	-	0.092	12.5	1.1	0.27	11.0	0.7	2.0	2	0	0	2	2	2	0	NAD(P)H	binding	domain	of	trans-2-enoyl-CoA	reductase
tRNA-synt_1	PF00133.22	gi|408405705|ref|YP_006863688.1|	-	3.4e-114	382.3	0.0	6.8e-113	378.0	0.0	2.2	1	1	0	1	1	1	1	tRNA	synthetases	class	I	(I,	L,	M	and	V)
Anticodon_1	PF08264.13	gi|408405705|ref|YP_006863688.1|	-	6.5e-32	110.6	1.6	8.9e-32	110.2	0.6	1.8	2	0	0	2	2	2	1	Anticodon-binding	domain	of	tRNA
tRNA-synt_1g	PF09334.11	gi|408405705|ref|YP_006863688.1|	-	2.5e-23	82.5	0.1	4e-12	45.6	0.0	3.4	3	1	0	3	3	3	3	tRNA	synthetases	class	I	(M)
tRNA-synt_1_2	PF13603.6	gi|408405705|ref|YP_006863688.1|	-	7.7e-05	22.3	0.0	0.037	13.5	0.0	2.7	1	1	1	2	2	2	2	Leucyl-tRNA	synthetase,	Domain	2
tRNA-synt_1e	PF01406.19	gi|408405705|ref|YP_006863688.1|	-	0.031	13.6	0.0	0.33	10.3	0.0	2.2	2	0	0	2	2	2	0	tRNA	synthetases	class	I	(C)	catalytic	domain
zf-TFIIB	PF13453.6	gi|408405705|ref|YP_006863688.1|	-	0.032	13.6	2.0	19	4.7	0.1	3.5	3	0	0	3	3	3	0	Transcription	factor	zinc-finger
DZR	PF12773.7	gi|408405705|ref|YP_006863688.1|	-	0.053	13.6	0.9	11	6.1	0.0	2.5	2	0	0	2	2	2	0	Double	zinc	ribbon
tRNA-synt_1f	PF01921.18	gi|408405705|ref|YP_006863688.1|	-	0.066	12.1	0.0	1.2	8.0	0.0	2.3	2	0	0	2	2	2	0	tRNA	synthetases	class	I	(K)
NPHI_C	PF08469.10	gi|408405706|ref|YP_006863689.1|	-	0.084	12.8	0.3	0.23	11.4	0.2	1.8	1	1	1	2	2	2	0	Nucleoside	triphosphatase	I	C-terminal
CoA_binding_3	PF13727.6	gi|408405707|ref|YP_006863690.1|	-	0.019	15.0	1.0	0.019	15.0	1.0	1.5	2	0	0	2	2	2	0	CoA-binding	domain
MAF_flag10	PF01973.18	gi|408405708|ref|YP_006863691.1|	-	1.8e-36	125.4	0.2	2.2e-36	125.1	0.2	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF115
TPK_catalytic	PF04263.16	gi|408405708|ref|YP_006863691.1|	-	0.0026	17.8	0.1	0.0055	16.7	0.0	1.6	2	0	0	2	2	2	1	Thiamin	pyrophosphokinase,	catalytic	domain
Polysacc_deac_2	PF04748.13	gi|408405708|ref|YP_006863691.1|	-	0.025	13.8	0.0	0.17	11.1	0.0	2.2	1	1	0	1	1	1	0	Divergent	polysaccharide	deacetylase
MG2	PF01835.19	gi|408405711|ref|YP_006863694.1|	-	0.00035	21.0	0.1	0.0019	18.6	0.1	2.0	1	1	1	2	2	2	1	MG2	domain
DUF1573	PF07610.11	gi|408405711|ref|YP_006863694.1|	-	0.022	14.8	0.8	0.54	10.3	0.0	2.3	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF1573)
DUF11	PF01345.18	gi|408405711|ref|YP_006863694.1|	-	0.13	12.6	1.0	2.9	8.3	1.0	2.5	1	1	0	1	1	1	0	Domain	of	unknown	function	DUF11
DDE_Tnp_1	PF01609.21	gi|408405712|ref|YP_006863695.1|	-	0.0002	21.1	0.0	0.00041	20.0	0.0	1.6	1	1	0	1	1	1	1	Transposase	DDE	domain
DUF1815	PF08844.10	gi|408405712|ref|YP_006863695.1|	-	0.17	11.9	0.2	0.87	9.6	0.1	2.0	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF1815)
Sld3_N	PF18523.1	gi|408405713|ref|YP_006863696.1|	-	0.089	12.9	0.0	0.13	12.4	0.0	1.2	1	0	0	1	1	1	0	Sld3	N-terminal	domain
HTH_45	PF14947.6	gi|408405714|ref|YP_006863697.1|	-	2.4e-06	27.4	0.1	2.6e-06	27.3	0.1	1.0	1	0	0	1	1	1	1	Winged	helix-turn-helix
DUF4364	PF14277.6	gi|408405714|ref|YP_006863697.1|	-	1.9e-05	24.5	0.0	2e-05	24.4	0.0	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4364)
Ribosomal_S19e	PF01090.19	gi|408405714|ref|YP_006863697.1|	-	0.0068	16.1	0.1	0.007	16.1	0.1	1.0	1	0	0	1	1	1	1	Ribosomal	protein	S19e
PadR	PF03551.14	gi|408405714|ref|YP_006863697.1|	-	0.025	14.5	0.0	0.03	14.3	0.0	1.2	1	0	0	1	1	1	0	Transcriptional	regulator	PadR-like	family
DUF1495	PF07381.11	gi|408405714|ref|YP_006863697.1|	-	0.032	14.0	0.0	0.07	13.0	0.0	1.6	1	1	1	2	2	2	0	Winged	helix	DNA-binding	domain	(DUF1495)
RQC	PF09382.10	gi|408405714|ref|YP_006863697.1|	-	0.042	13.6	0.0	0.044	13.6	0.0	1.1	1	0	0	1	1	1	0	RQC	domain
Mrr_N	PF14338.6	gi|408405714|ref|YP_006863697.1|	-	0.081	13.1	0.1	0.14	12.3	0.1	1.4	1	1	0	1	1	1	0	Mrr	N-terminal	domain
YjhX_toxin	PF09857.9	gi|408405714|ref|YP_006863697.1|	-	0.11	12.4	0.0	0.13	12.2	0.0	1.1	1	0	0	1	1	1	0	Putative	toxin	of	bacterial	toxin-antitoxin	pair
HATPase_c	PF02518.26	gi|408405716|ref|YP_006863699.1|	-	1.4e-26	93.2	0.1	3.2e-26	92.0	0.1	1.6	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HisKA	PF00512.25	gi|408405716|ref|YP_006863699.1|	-	2.3e-09	37.1	0.1	4.9e-09	36.1	0.1	1.6	1	0	0	1	1	1	1	His	Kinase	A	(phospho-acceptor)	domain
PLDc_2	PF13091.6	gi|408405716|ref|YP_006863699.1|	-	5.8e-05	23.0	0.3	0.00052	19.9	0.2	2.2	2	0	0	2	2	2	1	PLD-like	domain
HATPase_c_2	PF13581.6	gi|408405716|ref|YP_006863699.1|	-	0.0013	18.7	0.0	0.0027	17.6	0.0	1.5	1	0	0	1	1	1	1	Histidine	kinase-like	ATPase	domain
HATPase_c_5	PF14501.6	gi|408405716|ref|YP_006863699.1|	-	0.0014	18.5	0.0	0.0033	17.3	0.0	1.5	1	0	0	1	1	1	1	GHKL	domain
HATPase_c_3	PF13589.6	gi|408405716|ref|YP_006863699.1|	-	0.0054	16.6	0.0	0.012	15.5	0.0	1.5	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
ATP-grasp_6	PF18419.1	gi|408405716|ref|YP_006863699.1|	-	0.013	15.1	0.5	0.077	12.6	0.1	2.4	2	0	0	2	2	2	0	ATP-grasp-like	domain
Regulator_TrmB	PF11495.8	gi|408405716|ref|YP_006863699.1|	-	0.072	12.3	0.5	0.15	11.2	0.5	1.5	1	0	0	1	1	1	0	Archaeal	transcriptional	regulator	TrmB
DUF892	PF05974.12	gi|408405717|ref|YP_006863700.1|	-	2.5e-07	30.9	0.3	4.3e-07	30.1	0.3	1.4	1	1	0	1	1	1	1	Domain	of	unknown	function	(DUF892)
DUF4164	PF13747.6	gi|408405717|ref|YP_006863700.1|	-	0.0085	16.4	2.7	0.015	15.5	2.7	1.4	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4164)
Tektin	PF03148.14	gi|408405717|ref|YP_006863700.1|	-	0.0094	14.7	0.4	0.013	14.3	0.4	1.1	1	0	0	1	1	1	1	Tektin	family
DUF2383	PF09537.10	gi|408405717|ref|YP_006863700.1|	-	0.011	16.1	0.1	0.018	15.4	0.1	1.4	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF2383)
MerR-DNA-bind	PF09278.11	gi|408405717|ref|YP_006863700.1|	-	0.023	15.2	2.1	0.036	14.6	2.1	1.5	1	1	0	1	1	1	0	MerR,	DNA	binding
Coat_F	PF07875.12	gi|408405717|ref|YP_006863700.1|	-	0.026	14.8	0.1	0.053	13.8	0.1	1.5	1	0	0	1	1	1	0	Coat	F	domain
Ferritin	PF00210.24	gi|408405717|ref|YP_006863700.1|	-	0.037	13.9	0.2	0.56	10.1	0.4	1.9	1	1	1	2	2	2	0	Ferritin-like	domain
4HB_MCP_1	PF12729.7	gi|408405717|ref|YP_006863700.1|	-	0.061	12.9	0.8	0.077	12.5	0.8	1.3	1	1	0	1	1	1	0	Four	helix	bundle	sensory	module	for	signal	transduction
CLZ	PF16526.5	gi|408405717|ref|YP_006863700.1|	-	0.91	9.9	5.6	0.17	12.2	2.1	1.6	2	0	0	2	2	2	0	C-terminal	leucine	zipper	domain	of	cyclic	nucleotide-gated	channels
DUF892	PF05974.12	gi|408405718|ref|YP_006863701.1|	-	2.4e-06	27.7	0.0	2.6e-06	27.5	0.0	1.0	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF892)
GRA6	PF05084.13	gi|408405720|ref|YP_006863703.1|	-	0.22	11.4	0.9	0.29	11.1	0.9	1.1	1	0	0	1	1	1	0	Granule	antigen	protein	(GRA6)
DUF4138	PF13595.6	gi|408405721|ref|YP_006863704.1|	-	0.1	11.9	0.1	0.12	11.6	0.1	1.0	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4138)
Abhydrolase_2	PF02230.16	gi|408405722|ref|YP_006863705.1|	-	2.8e-10	40.4	0.0	7.2e-10	39.0	0.0	1.6	1	1	0	1	1	1	1	Phospholipase/Carboxylesterase
Hydrolase_4	PF12146.8	gi|408405722|ref|YP_006863705.1|	-	2e-06	27.3	0.0	0.035	13.4	0.0	2.4	2	1	1	3	3	3	2	Serine	aminopeptidase,	S33
DLH	PF01738.18	gi|408405722|ref|YP_006863705.1|	-	7.5e-06	25.6	0.0	1.1e-05	25.1	0.0	1.2	1	0	0	1	1	1	1	Dienelactone	hydrolase	family
Peptidase_S9	PF00326.21	gi|408405722|ref|YP_006863705.1|	-	1.3e-05	24.8	0.0	0.053	13.0	0.0	2.9	2	1	1	3	3	3	2	Prolyl	oligopeptidase	family
Abhydrolase_1	PF00561.20	gi|408405722|ref|YP_006863705.1|	-	0.0032	17.2	0.1	0.46	10.1	0.1	2.5	1	1	1	2	2	2	2	alpha/beta	hydrolase	fold
Abhydrolase_3	PF07859.13	gi|408405722|ref|YP_006863705.1|	-	0.016	15.1	0.0	0.024	14.5	0.0	1.2	1	0	0	1	1	1	0	alpha/beta	hydrolase	fold
Abhydrolase_4	PF08386.10	gi|408405722|ref|YP_006863705.1|	-	0.022	14.9	0.0	0.062	13.4	0.0	1.7	2	0	0	2	2	2	0	TAP-like	protein
Glyoxalase	PF00903.25	gi|408405723|ref|YP_006863706.1|	-	5.4e-26	91.3	1.3	2.9e-15	56.6	0.1	2.5	2	1	0	2	2	2	2	Glyoxalase/Bleomycin	resistance	protein/Dioxygenase	superfamily
Glyoxalase_4	PF13669.6	gi|408405723|ref|YP_006863706.1|	-	0.096	13.0	0.0	7.7	6.8	0.0	3.4	2	1	0	2	2	2	0	Glyoxalase/Bleomycin	resistance	protein/Dioxygenase	superfamily
DUF21	PF01595.20	gi|408405724|ref|YP_006863707.1|	-	1.1e-46	158.8	3.6	2e-46	157.9	3.6	1.4	1	0	0	1	1	1	1	Cyclin	M	transmembrane	N-terminal	domain
CorC_HlyC	PF03471.17	gi|408405724|ref|YP_006863707.1|	-	5.9e-18	64.7	0.3	5.9e-18	64.7	0.3	2.2	2	0	0	2	2	2	1	Transporter	associated	domain
CBS	PF00571.28	gi|408405724|ref|YP_006863707.1|	-	1.8e-17	63.5	1.1	2.5e-07	31.0	0.1	2.5	2	0	0	2	2	2	2	CBS	domain
DNA_PPF	PF02916.15	gi|408405724|ref|YP_006863707.1|	-	0.059	13.8	1.0	0.91	9.9	0.1	2.5	1	1	1	2	2	2	0	DNA	polymerase	processivity	factor
ENTH	PF01417.20	gi|408405725|ref|YP_006863708.1|	-	0.13	12.3	0.0	0.24	11.4	0.0	1.4	1	0	0	1	1	1	0	ENTH	domain
Spc42p	PF11544.8	gi|408405725|ref|YP_006863708.1|	-	0.17	11.9	2.1	3.8	7.6	0.3	2.5	2	0	0	2	2	2	0	Spindle	pole	body	component	Spc42p
GATase	PF00117.28	gi|408405726|ref|YP_006863709.1|	-	6.5e-44	150.0	0.0	9.4e-44	149.5	0.0	1.2	1	0	0	1	1	1	1	Glutamine	amidotransferase	class-I
GMP_synt_C	PF00958.22	gi|408405726|ref|YP_006863709.1|	-	3.1e-34	116.9	0.0	6.2e-34	115.9	0.0	1.5	1	0	0	1	1	1	1	GMP	synthase	C	terminal	domain
NAD_synthase	PF02540.17	gi|408405726|ref|YP_006863709.1|	-	1.9e-11	43.6	0.3	3.2e-06	26.4	0.1	2.3	2	0	0	2	2	2	2	NAD	synthase
Peptidase_C26	PF07722.13	gi|408405726|ref|YP_006863709.1|	-	6.5e-11	42.4	0.0	4.3e-10	39.7	0.0	2.4	1	1	0	1	1	1	1	Peptidase	C26
ATP_bind_3	PF01171.20	gi|408405726|ref|YP_006863709.1|	-	5.7e-06	26.2	0.0	9.8e-06	25.4	0.0	1.4	1	0	0	1	1	1	1	PP-loop	family
QueC	PF06508.13	gi|408405726|ref|YP_006863709.1|	-	0.00014	21.4	0.0	0.0013	18.3	0.0	2.1	1	1	0	1	1	1	1	Queuosine	biosynthesis	protein	QueC
Asn_synthase	PF00733.21	gi|408405726|ref|YP_006863709.1|	-	0.00093	19.0	0.0	0.0015	18.3	0.0	1.2	1	0	0	1	1	1	1	Asparagine	synthase
ThiI	PF02568.14	gi|408405726|ref|YP_006863709.1|	-	0.001	18.7	0.0	0.011	15.3	0.0	2.1	2	0	0	2	2	2	1	Thiamine	biosynthesis	protein	(ThiI)
tRNA_Me_trans	PF03054.16	gi|408405726|ref|YP_006863709.1|	-	0.0028	16.5	0.0	0.0098	14.7	0.0	1.8	2	0	0	2	2	2	1	tRNA	methyl	transferase
PAPS_reduct	PF01507.19	gi|408405726|ref|YP_006863709.1|	-	0.097	12.7	0.0	0.16	12.0	0.0	1.3	1	0	0	1	1	1	0	Phosphoadenosine	phosphosulfate	reductase	family
AAA_assoc_2	PF16193.5	gi|408405727|ref|YP_006863710.1|	-	2.8e-05	24.3	0.3	6e-05	23.3	0.3	1.7	1	1	0	1	1	1	1	AAA	C-terminal	domain
AAA_assoc_C	PF09821.9	gi|408405728|ref|YP_006863711.1|	-	7.5e-07	29.7	0.0	0.0042	17.6	0.0	2.5	2	0	0	2	2	2	2	C-terminal	AAA-associated	domain
Mrr_N	PF14338.6	gi|408405728|ref|YP_006863711.1|	-	0.036	14.2	1.7	0.27	11.4	0.0	3.3	4	1	1	5	5	5	0	Mrr	N-terminal	domain
HTH_27	PF13463.6	gi|408405728|ref|YP_006863711.1|	-	0.076	13.5	0.0	0.36	11.4	0.0	2.1	2	0	0	2	2	2	0	Winged	helix	DNA-binding	domain
HTH_11	PF08279.12	gi|408405728|ref|YP_006863711.1|	-	0.15	12.1	0.2	13	5.8	0.0	3.5	4	0	0	4	4	4	0	HTH	domain
NEAT	PF05031.12	gi|408405729|ref|YP_006863712.1|	-	0.055	14.1	0.4	0.11	13.1	0.4	1.4	1	0	0	1	1	1	0	Iron	Transport-associated	domain
AAA_assoc_C	PF09821.9	gi|408405730|ref|YP_006863713.1|	-	1.3e-06	28.9	0.0	2.2e-06	28.2	0.0	1.3	1	0	0	1	1	1	1	C-terminal	AAA-associated	domain
DUF746	PF05344.11	gi|408405730|ref|YP_006863713.1|	-	0.0067	16.2	0.0	0.034	14.0	0.0	2.1	3	0	0	3	3	3	1	Domain	of	Unknown	Function	(DUF746)
HTH_23	PF13384.6	gi|408405730|ref|YP_006863713.1|	-	0.0093	15.7	0.1	0.35	10.7	0.1	3.1	2	2	0	2	2	2	1	Homeodomain-like	domain
HTH_17	PF12728.7	gi|408405730|ref|YP_006863713.1|	-	0.012	15.8	0.1	0.031	14.5	0.1	1.7	1	0	0	1	1	1	0	Helix-turn-helix	domain
DUF1207	PF06727.11	gi|408405730|ref|YP_006863713.1|	-	0.055	12.4	0.0	0.075	11.9	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1207)
HTH_29	PF13551.6	gi|408405730|ref|YP_006863713.1|	-	0.057	13.4	0.0	2.7	8.1	0.0	2.5	2	0	0	2	2	2	0	Winged	helix-turn	helix
Sigma70_r4_2	PF08281.12	gi|408405730|ref|YP_006863713.1|	-	0.074	12.7	0.7	0.95	9.2	0.0	2.8	2	1	1	3	3	3	0	Sigma-70,	region	4
HTH_Tnp_ISL3	PF13542.6	gi|408405730|ref|YP_006863713.1|	-	0.16	11.4	0.0	0.29	10.6	0.0	1.6	1	0	0	1	1	1	0	Helix-turn-helix	domain	of	transposase	family	ISL3
Peptidase_M32	PF02074.15	gi|408405732|ref|YP_006863715.1|	-	6.6e-164	546.3	0.2	7.5e-164	546.1	0.2	1.0	1	0	0	1	1	1	1	Carboxypeptidase	Taq	(M32)	metallopeptidase
TrmB	PF01978.19	gi|408405732|ref|YP_006863715.1|	-	0.0025	17.7	0.0	0.0087	15.9	0.0	1.9	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
CSRNP_N	PF16019.5	gi|408405732|ref|YP_006863715.1|	-	0.17	11.8	0.0	0.31	10.9	0.0	1.3	1	0	0	1	1	1	0	Cysteine/serine-rich	nuclear	protein	N-terminus
LpqV	PF17301.2	gi|408405732|ref|YP_006863715.1|	-	0.22	11.8	0.0	0.41	10.9	0.0	1.4	1	0	0	1	1	1	0	Putative	lipoprotein	LpqV
GP17	PF17420.2	gi|408405732|ref|YP_006863715.1|	-	0.39	10.9	3.3	0.46	10.7	0.0	2.8	4	0	0	4	4	4	0	Superinfection	exclusion	gene	product	17
AsnC_trans_reg	PF01037.21	gi|408405733|ref|YP_006863716.1|	-	1.3e-12	47.4	0.2	1.5e-12	47.3	0.2	1.0	1	0	0	1	1	1	1	Lrp/AsnC	ligand	binding	domain
NapD	PF03927.13	gi|408405733|ref|YP_006863716.1|	-	5.8e-05	23.1	0.7	6.8e-05	22.9	0.7	1.1	1	0	0	1	1	1	1	NapD	protein
GYD	PF08734.11	gi|408405733|ref|YP_006863716.1|	-	0.00076	19.4	0.1	0.0008	19.3	0.1	1.1	1	0	0	1	1	1	1	GYD	domain
ACT_4	PF13291.6	gi|408405733|ref|YP_006863716.1|	-	0.0019	18.7	0.2	0.22	12.1	0.1	2.1	2	0	0	2	2	2	1	ACT	domain
Flagellin_IN	PF07196.13	gi|408405733|ref|YP_006863716.1|	-	0.0099	16.1	1.1	0.014	15.6	1.1	1.3	1	0	0	1	1	1	1	Flagellin	hook	IN	motif
HMA	PF00403.26	gi|408405733|ref|YP_006863716.1|	-	0.034	14.6	0.1	0.047	14.1	0.1	1.4	1	0	0	1	1	1	0	Heavy-metal-associated	domain
MMR_HSR1_C	PF08438.10	gi|408405733|ref|YP_006863716.1|	-	0.058	14.0	0.1	2.7	8.6	0.0	2.1	1	1	1	2	2	2	0	GTPase	of	unknown	function	C-terminal
Mfa1	PF17445.2	gi|408405734|ref|YP_006863717.1|	-	0.1	12.6	3.1	8.1	6.6	0.1	3.9	2	2	2	4	4	4	0	Mating	factor	A1
Form_Nir_trans	PF01226.17	gi|408405735|ref|YP_006863718.1|	-	5.7e-54	183.0	28.4	9.3e-54	182.3	28.4	1.3	1	0	0	1	1	1	1	Formate/nitrite	transporter
LTD	PF00932.19	gi|408405737|ref|YP_006863720.1|	-	1e-06	29.1	0.0	2.2e-06	28.0	0.0	1.6	1	0	0	1	1	1	1	Lamin	Tail	Domain
Cyanate_lyase	PF02560.14	gi|408405738|ref|YP_006863721.1|	-	6.8e-30	102.7	0.1	1.1e-29	102.0	0.1	1.3	1	0	0	1	1	1	1	Cyanate	lyase	C-terminal	domain
SHOCT	PF09851.9	gi|408405739|ref|YP_006863722.1|	-	1.3e-07	31.2	0.2	3e-07	30.0	0.2	1.7	1	0	0	1	1	1	1	Short	C-terminal	domain
STELLO	PF03385.17	gi|408405739|ref|YP_006863722.1|	-	0.055	12.3	0.3	0.11	11.3	0.1	1.6	2	0	0	2	2	2	0	STELLO	glycosyltransferases
GvpG	PF05120.12	gi|408405739|ref|YP_006863722.1|	-	0.077	13.0	0.5	0.14	12.1	0.5	1.4	1	0	0	1	1	1	0	Gas	vesicle	protein	G
DUF5321	PF17254.2	gi|408405740|ref|YP_006863723.1|	-	0.019	14.4	0.0	0.02	14.3	0.0	1.0	1	0	0	1	1	1	0	Family	of	unknown	function	(DUF5321)
ParBc	PF02195.18	gi|408405741|ref|YP_006863724.1|	-	7.4e-23	80.7	0.2	1.7e-22	79.5	0.2	1.7	1	0	0	1	1	1	1	ParB-like	nuclease	domain
HTH_ParB	PF17762.1	gi|408405741|ref|YP_006863724.1|	-	9.7e-05	22.1	4.0	0.00014	21.6	2.2	2.2	2	0	0	2	2	2	1	HTH	domain	found	in	ParB	protein
DUF1861	PF08950.10	gi|408405741|ref|YP_006863724.1|	-	0.041	13.1	0.0	0.071	12.4	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1861)
HTH_24	PF13412.6	gi|408405743|ref|YP_006863726.1|	-	1.6e-05	24.4	1.2	0.00025	20.5	1.2	2.2	1	1	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_12	PF08461.10	gi|408405743|ref|YP_006863726.1|	-	0.0014	18.5	0.6	0.0022	17.9	0.6	1.3	1	0	0	1	1	1	1	Ribonuclease	R	winged-helix	domain
HTH_AsnC-type	PF13404.6	gi|408405743|ref|YP_006863726.1|	-	0.0025	17.6	0.4	0.017	15.0	0.4	2.1	1	1	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
Type2_restr_D3	PF16902.5	gi|408405743|ref|YP_006863726.1|	-	0.061	13.3	0.0	0.1	12.5	0.0	1.3	1	0	0	1	1	1	0	Type-2	restriction	enzyme	D3	domain
NTP_transf_2	PF01909.23	gi|408405744|ref|YP_006863727.1|	-	2.7e-08	34.0	0.1	4.8e-08	33.2	0.1	1.4	1	0	0	1	1	1	1	Nucleotidyltransferase	domain
Polbeta	PF18765.1	gi|408405744|ref|YP_006863727.1|	-	4.5e-08	33.1	0.3	8.2e-08	32.2	0.3	1.5	1	1	0	1	1	1	1	Polymerase	beta,	Nucleotidyltransferase
HTH_20	PF12840.7	gi|408405744|ref|YP_006863727.1|	-	0.02	14.9	0.0	0.031	14.4	0.0	1.3	1	0	0	1	1	1	0	Helix-turn-helix	domain
DUF4269	PF14091.6	gi|408405744|ref|YP_006863727.1|	-	0.033	14.5	0.0	0.056	13.7	0.0	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4269)
MarR_2	PF12802.7	gi|408405744|ref|YP_006863727.1|	-	0.077	12.9	0.0	0.15	12.0	0.0	1.5	1	0	0	1	1	1	0	MarR	family
GntR	PF00392.21	gi|408405744|ref|YP_006863727.1|	-	0.083	12.5	0.0	0.21	11.3	0.0	1.7	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	gntR	family
HEPN	PF05168.14	gi|408405745|ref|YP_006863728.1|	-	3.9e-05	23.8	0.0	4.3e-05	23.6	0.0	1.1	1	0	0	1	1	1	1	HEPN	domain
ThiC_Rad_SAM	PF01964.18	gi|408405747|ref|YP_006863730.1|	-	2.1e-173	576.9	0.8	2.6e-173	576.6	0.8	1.0	1	0	0	1	1	1	1	Radical	SAM	ThiC	family
CnrY	PF17524.2	gi|408405747|ref|YP_006863730.1|	-	0.13	12.5	0.0	1.5	9.1	0.0	2.5	2	0	0	2	2	2	0	Anti-sigma	factor	CnrY
DNAPolymera_Pol	PF11590.8	gi|408405747|ref|YP_006863730.1|	-	1	9.3	0.0	1	9.3	0.0	2.5	3	0	0	3	3	3	0	DNA	polymerase	catalytic	subunit	Pol
ATG11	PF10377.9	gi|408405748|ref|YP_006863731.1|	-	0.065	13.3	0.0	0.077	13.1	0.0	1.2	1	1	0	1	1	1	0	Autophagy-related	protein	11
HEPN_Cthe2314	PF18730.1	gi|408405752|ref|YP_006863735.1|	-	0.0058	16.7	0.0	0.0086	16.1	0.0	1.4	1	0	0	1	1	1	1	Cthe_2314-like	HEPN
DUF4149	PF13664.6	gi|408405754|ref|YP_006863737.1|	-	0.013	15.8	1.9	0.013	15.8	1.9	2.3	2	1	1	3	3	3	0	Domain	of	unknown	function	(DUF4149)
DUF1772	PF08592.11	gi|408405754|ref|YP_006863737.1|	-	0.28	11.5	4.7	0.4	11.0	0.2	2.1	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF1772)
DUF412	PF04217.13	gi|408405754|ref|YP_006863737.1|	-	2.1	8.3	6.5	0.88	9.5	3.5	1.8	2	0	0	2	2	2	0	Protein	of	unknown	function,	DUF412
AP_endonuc_2	PF01261.24	gi|408405755|ref|YP_006863738.1|	-	6.6e-11	42.0	0.0	1.2e-09	38.0	0.0	2.1	1	1	0	1	1	1	1	Xylose	isomerase-like	TIM	barrel
DnaJ_CXXCXGXG	PF00684.19	gi|408405756|ref|YP_006863739.1|	-	0.06	13.7	18.9	0.36	11.2	10.2	2.6	1	1	0	1	1	1	0	DnaJ	central	domain
PsbH	PF00737.20	gi|408405756|ref|YP_006863739.1|	-	0.087	12.6	0.1	0.12	12.2	0.1	1.2	1	0	0	1	1	1	0	Photosystem	II	10	kDa	phosphoprotein
zf-CCHC	PF00098.23	gi|408405756|ref|YP_006863739.1|	-	0.22	11.7	2.0	0.22	11.7	2.0	3.9	4	0	0	4	4	4	0	Zinc	knuckle
zf-ribbon_3	PF13248.6	gi|408405756|ref|YP_006863739.1|	-	1.2	8.6	20.8	2.9	7.4	6.6	3.9	1	1	2	3	3	3	0	zinc-ribbon	domain
DUF5351	PF17302.2	gi|408405756|ref|YP_006863739.1|	-	1.9	8.7	19.4	1.7	8.9	0.6	3.8	2	2	2	4	4	4	0	Family	of	unknown	function	(DUF5351)
ParD_like	PF11903.8	gi|408405757|ref|YP_006863740.1|	-	0.038	14.1	0.0	0.35	11.0	0.0	2.2	2	0	0	2	2	2	0	ParD-like	antitoxin	of	type	II	bacterial	toxin-antitoxin	system
AAA	PF00004.29	gi|408405758|ref|YP_006863741.1|	-	1.1e-97	323.6	0.0	1.8e-47	161.1	0.0	2.3	2	0	0	2	2	2	2	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_2	PF07724.14	gi|408405758|ref|YP_006863741.1|	-	3.9e-15	56.4	0.0	2.9e-06	27.5	0.0	2.5	2	0	0	2	2	2	2	AAA	domain	(Cdc48	subfamily)
RuvB_N	PF05496.12	gi|408405758|ref|YP_006863741.1|	-	5.2e-15	55.6	0.0	1.2e-07	31.6	0.0	2.8	2	1	0	2	2	2	2	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
AAA_16	PF13191.6	gi|408405758|ref|YP_006863741.1|	-	1.6e-13	51.4	0.4	0.0001	22.8	0.0	4.5	3	2	0	4	4	3	2	AAA	ATPase	domain
AAA_lid_3	PF17862.1	gi|408405758|ref|YP_006863741.1|	-	3.1e-13	49.3	0.1	1.1e-12	47.5	0.1	2.0	2	1	0	2	2	1	1	AAA+	lid	domain
CDC48_2	PF02933.17	gi|408405758|ref|YP_006863741.1|	-	4e-13	49.0	0.0	1e-12	47.6	0.0	1.6	1	0	0	1	1	1	1	Cell	division	protein	48	(CDC48),	domain	2
AAA_22	PF13401.6	gi|408405758|ref|YP_006863741.1|	-	2.2e-11	44.2	0.4	0.0047	17.2	0.0	4.0	2	2	1	3	3	3	2	AAA	domain
AAA_5	PF07728.14	gi|408405758|ref|YP_006863741.1|	-	6e-11	42.5	1.3	0.00011	22.3	0.1	4.4	2	2	0	2	2	2	2	AAA	domain	(dynein-related	subfamily)
AAA_33	PF13671.6	gi|408405758|ref|YP_006863741.1|	-	8.2e-10	39.0	0.0	2.4e-05	24.5	0.0	2.7	2	0	0	2	2	2	2	AAA	domain
TIP49	PF06068.13	gi|408405758|ref|YP_006863741.1|	-	4.1e-09	36.1	0.0	0.0029	16.9	0.0	2.5	2	0	0	2	2	2	2	TIP49	P-loop	domain
AAA_14	PF13173.6	gi|408405758|ref|YP_006863741.1|	-	7e-09	35.8	0.0	0.00078	19.5	0.0	2.5	2	0	0	2	2	2	2	AAA	domain
IstB_IS21	PF01695.17	gi|408405758|ref|YP_006863741.1|	-	2.2e-07	30.8	0.1	0.0078	16.0	0.0	2.4	2	0	0	2	2	2	2	IstB-like	ATP	binding	protein
AAA_18	PF13238.6	gi|408405758|ref|YP_006863741.1|	-	3.7e-07	30.7	0.1	0.0082	16.7	0.0	2.9	3	0	0	3	3	2	2	AAA	domain
RNA_helicase	PF00910.22	gi|408405758|ref|YP_006863741.1|	-	9.1e-07	29.2	0.0	0.047	14.1	0.0	2.8	2	0	0	2	2	2	2	RNA	helicase
Mg_chelatase	PF01078.21	gi|408405758|ref|YP_006863741.1|	-	1.6e-06	27.7	0.6	0.064	12.6	0.1	2.6	2	0	0	2	2	2	2	Magnesium	chelatase,	subunit	ChlI
AAA_7	PF12775.7	gi|408405758|ref|YP_006863741.1|	-	2e-06	27.5	0.1	0.07	12.6	0.0	3.0	2	1	0	2	2	2	2	P-loop	containing	dynein	motor	region
AAA_28	PF13521.6	gi|408405758|ref|YP_006863741.1|	-	3.3e-06	27.4	0.0	0.0035	17.6	0.0	2.6	2	0	0	2	2	2	1	AAA	domain
Sigma54_activat	PF00158.26	gi|408405758|ref|YP_006863741.1|	-	3.4e-06	26.9	0.5	0.28	10.9	0.0	4.2	5	1	0	5	5	5	2	Sigma-54	interaction	domain
Zeta_toxin	PF06414.12	gi|408405758|ref|YP_006863741.1|	-	7.2e-06	25.4	0.0	0.086	12.1	0.0	2.4	2	0	0	2	2	2	2	Zeta	toxin
AAA_24	PF13479.6	gi|408405758|ref|YP_006863741.1|	-	9.8e-06	25.4	0.9	0.062	13.0	0.1	3.2	2	2	1	3	3	3	2	AAA	domain
TsaE	PF02367.17	gi|408405758|ref|YP_006863741.1|	-	1e-05	25.5	0.2	0.13	12.3	0.0	2.9	2	1	1	3	3	3	2	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
AAA_3	PF07726.11	gi|408405758|ref|YP_006863741.1|	-	1.5e-05	24.9	0.0	0.16	11.8	0.0	3.0	3	0	0	3	3	2	2	ATPase	family	associated	with	various	cellular	activities	(AAA)
PhoH	PF02562.16	gi|408405758|ref|YP_006863741.1|	-	1.8e-05	24.3	0.4	0.048	13.1	0.0	2.5	2	0	0	2	2	2	2	PhoH-like	protein
DUF815	PF05673.13	gi|408405758|ref|YP_006863741.1|	-	4.2e-05	22.8	0.0	0.068	12.3	0.0	2.6	2	1	0	2	2	2	2	Protein	of	unknown	function	(DUF815)
AAA_25	PF13481.6	gi|408405758|ref|YP_006863741.1|	-	5.3e-05	22.9	0.5	1.8	8.1	0.0	3.5	3	0	0	3	3	3	2	AAA	domain
AAA_30	PF13604.6	gi|408405758|ref|YP_006863741.1|	-	5.8e-05	22.9	1.4	0.098	12.4	0.2	2.9	2	1	0	2	2	2	2	AAA	domain
ATPase_2	PF01637.18	gi|408405758|ref|YP_006863741.1|	-	7.9e-05	22.7	0.1	0.75	9.7	0.0	3.4	2	2	1	3	3	3	2	ATPase	domain	predominantly	from	Archaea
DUF2075	PF09848.9	gi|408405758|ref|YP_006863741.1|	-	8.3e-05	22.0	0.0	0.045	13.0	0.0	2.2	2	0	0	2	2	2	2	Uncharacterized	conserved	protein	(DUF2075)
AAA_11	PF13086.6	gi|408405758|ref|YP_006863741.1|	-	8.7e-05	22.4	0.0	0.14	12.0	0.0	2.2	2	0	0	2	2	2	2	AAA	domain
ABC_tran	PF00005.27	gi|408405758|ref|YP_006863741.1|	-	9.2e-05	23.0	0.0	0.11	13.0	0.0	2.4	2	0	0	2	2	2	1	ABC	transporter
NACHT	PF05729.12	gi|408405758|ref|YP_006863741.1|	-	0.00014	21.8	0.0	0.23	11.4	0.0	3.3	3	0	0	3	3	3	1	NACHT	domain
ATPase	PF06745.13	gi|408405758|ref|YP_006863741.1|	-	0.00015	21.2	0.1	0.63	9.3	0.0	3.2	3	0	0	3	3	3	1	KaiC
NB-ARC	PF00931.22	gi|408405758|ref|YP_006863741.1|	-	0.00068	18.9	0.0	0.21	10.7	0.0	2.5	2	0	0	2	2	2	1	NB-ARC	domain
AAA_19	PF13245.6	gi|408405758|ref|YP_006863741.1|	-	0.00073	19.9	2.5	1.3	9.4	0.0	3.4	3	1	1	4	4	3	1	AAA	domain
Parvo_NS1	PF01057.17	gi|408405758|ref|YP_006863741.1|	-	0.0011	18.1	0.3	0.99	8.4	0.0	2.2	2	0	0	2	2	2	2	Parvovirus	non-structural	protein	NS1
NTPase_1	PF03266.15	gi|408405758|ref|YP_006863741.1|	-	0.0023	17.9	2.5	0.71	9.8	0.0	3.8	3	1	1	4	4	4	1	NTPase
AAA_17	PF13207.6	gi|408405758|ref|YP_006863741.1|	-	0.0039	17.6	0.0	2.9	8.3	0.0	2.6	2	0	0	2	2	2	1	AAA	domain
AFG1_ATPase	PF03969.16	gi|408405758|ref|YP_006863741.1|	-	0.004	16.1	0.0	1.6	7.6	0.0	2.4	2	0	0	2	2	2	1	AFG1-like	ATPase
Viral_helicase1	PF01443.18	gi|408405758|ref|YP_006863741.1|	-	0.0052	16.6	0.0	1.7	8.3	0.0	2.3	2	0	0	2	2	2	1	Viral	(Superfamily	1)	RNA	helicase
Bac_DnaA	PF00308.18	gi|408405758|ref|YP_006863741.1|	-	0.0057	16.5	0.0	1.7	8.4	0.0	2.6	2	1	0	2	2	2	1	Bacterial	dnaA	protein
Hydin_ADK	PF17213.3	gi|408405758|ref|YP_006863741.1|	-	0.0063	16.8	0.3	0.71	10.1	0.1	2.3	2	0	0	2	2	2	1	Hydin	Adenylate	kinase-like	domain
TniB	PF05621.11	gi|408405758|ref|YP_006863741.1|	-	0.0081	15.6	0.0	10	5.5	0.0	3.3	2	1	1	3	3	3	0	Bacterial	TniB	protein
T2SSE	PF00437.20	gi|408405758|ref|YP_006863741.1|	-	0.0087	15.1	0.0	2.4	7.1	0.0	2.6	2	1	0	2	2	2	1	Type	II/IV	secretion	system	protein
ResIII	PF04851.15	gi|408405758|ref|YP_006863741.1|	-	0.01	15.8	0.0	5.8	6.9	0.0	2.6	2	1	0	2	2	2	0	Type	III	restriction	enzyme,	res	subunit
Sigma54_activ_2	PF14532.6	gi|408405758|ref|YP_006863741.1|	-	0.019	15.1	0.0	7.6	6.6	0.0	2.6	2	0	0	2	2	2	0	Sigma-54	interaction	domain
ATP-synt_ab	PF00006.25	gi|408405758|ref|YP_006863741.1|	-	0.023	14.4	0.0	0.9	9.2	0.0	2.5	2	1	0	2	2	2	0	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
Zot	PF05707.12	gi|408405758|ref|YP_006863741.1|	-	0.025	14.2	0.1	0.67	9.6	0.0	2.7	2	1	1	3	3	3	0	Zonular	occludens	toxin	(Zot)
KTI12	PF08433.10	gi|408405758|ref|YP_006863741.1|	-	0.025	14.0	0.0	0.7	9.3	0.0	2.5	2	1	0	2	2	2	0	Chromatin	associated	protein	KTI12
KAP_NTPase	PF07693.14	gi|408405758|ref|YP_006863741.1|	-	0.027	13.7	0.0	1.6	7.9	0.0	2.7	2	1	0	3	3	3	0	KAP	family	P-loop	domain
Guanylate_kin	PF00625.21	gi|408405758|ref|YP_006863741.1|	-	0.028	14.1	0.2	9.3	5.9	0.0	3.6	2	2	2	4	4	4	0	Guanylate	kinase
Cytidylate_kin	PF02224.18	gi|408405758|ref|YP_006863741.1|	-	0.03	14.0	0.3	2.7	7.7	0.0	2.6	3	0	0	3	3	2	0	Cytidylate	kinase
CPT	PF07931.12	gi|408405758|ref|YP_006863741.1|	-	0.031	14.1	0.0	2.9	7.7	0.0	2.5	2	0	0	2	2	2	0	Chloramphenicol	phosphotransferase-like	protein
Torsin	PF06309.11	gi|408405758|ref|YP_006863741.1|	-	0.055	13.6	0.0	2	8.5	0.0	2.5	2	0	0	2	2	2	0	Torsin
Vps4_C	PF09336.10	gi|408405758|ref|YP_006863741.1|	-	0.067	13.2	0.2	0.18	11.9	0.2	1.6	1	0	0	1	1	1	0	Vps4	C	terminal	oligomerisation	domain
MCM	PF00493.23	gi|408405758|ref|YP_006863741.1|	-	0.077	12.1	0.0	11	5.1	0.0	2.7	3	0	0	3	3	3	0	MCM	P-loop	domain
DAP3	PF10236.9	gi|408405758|ref|YP_006863741.1|	-	0.096	11.8	0.0	10	5.2	0.0	2.2	2	0	0	2	2	2	0	Mitochondrial	ribosomal	death-associated	protein	3
SurE	PF01975.17	gi|408405758|ref|YP_006863741.1|	-	0.1	12.3	0.5	1.7	8.4	0.2	2.2	2	0	0	2	2	2	0	Survival	protein	SurE
SRPRB	PF09439.10	gi|408405758|ref|YP_006863741.1|	-	0.18	11.2	0.0	9.3	5.6	0.0	2.6	2	1	0	2	2	2	0	Signal	recognition	particle	receptor	beta	subunit
LID	PF17916.1	gi|408405758|ref|YP_006863741.1|	-	1.8	8.3	7.4	2.8	7.7	0.1	2.7	3	0	0	3	3	2	0	LIM	interaction	domain	(LID)
AAA_lid_3	PF17862.1	gi|408405759|ref|YP_006863742.1|	-	1.5e-14	53.5	3.7	6.7e-14	51.4	3.7	2.0	1	1	0	1	1	1	1	AAA+	lid	domain
CsgA	PF17334.2	gi|408405759|ref|YP_006863742.1|	-	0.0057	17.4	0.6	0.0082	16.9	0.6	1.1	1	0	0	1	1	1	1	Minor	curli	fiber	component	A
DUF2130	PF09903.9	gi|408405759|ref|YP_006863742.1|	-	0.012	14.8	0.3	0.014	14.7	0.3	1.1	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2130)
Virulence_RhuM	PF13310.6	gi|408405759|ref|YP_006863742.1|	-	0.041	13.1	0.0	0.05	12.8	0.0	1.1	1	0	0	1	1	1	0	Virulence	protein	RhuM	family
Vps4_C	PF09336.10	gi|408405759|ref|YP_006863742.1|	-	0.045	13.8	0.0	0.086	12.8	0.0	1.5	1	0	0	1	1	1	0	Vps4	C	terminal	oligomerisation	domain
Aldo_ket_red	PF00248.21	gi|408405761|ref|YP_006863744.1|	-	3.7e-63	213.5	0.0	4.7e-63	213.1	0.0	1.1	1	0	0	1	1	1	1	Aldo/keto	reductase	family
HTH_Tnp_ISL3	PF13542.6	gi|408405761|ref|YP_006863744.1|	-	0.2	11.1	1.2	3.1	7.3	0.2	2.5	2	0	0	2	2	2	0	Helix-turn-helix	domain	of	transposase	family	ISL3
SpoU_methylase	PF00588.19	gi|408405762|ref|YP_006863745.1|	-	3e-27	95.5	0.1	4.4e-27	95.0	0.1	1.2	1	0	0	1	1	1	1	SpoU	rRNA	Methylase	family
Methyltrn_RNA_4	PF09936.9	gi|408405762|ref|YP_006863745.1|	-	0.00036	20.5	0.1	0.0037	17.1	0.1	2.1	1	1	0	1	1	1	1	SAM-dependent	RNA	methyltransferase
DUF1326	PF07040.11	gi|408405764|ref|YP_006863747.1|	-	2e-36	125.7	0.0	2.2e-36	125.5	0.0	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1326)
HYR	PF02494.16	gi|408405766|ref|YP_006863749.1|	-	0.041	14.2	0.3	0.22	11.9	0.0	2.2	2	1	0	2	2	2	0	HYR	domain
EF1G	PF00647.19	gi|408405766|ref|YP_006863749.1|	-	0.066	13.3	0.0	0.15	12.1	0.0	1.5	2	0	0	2	2	2	0	Elongation	factor	1	gamma,	conserved	domain
TTSSLRR	PF12468.8	gi|408405766|ref|YP_006863749.1|	-	0.13	12.5	0.2	0.25	11.6	0.2	1.4	1	0	0	1	1	1	0	Type	III	secretion	system	leucine	rich	repeat	protein
Lar_restr_allev	PF14354.6	gi|408405770|ref|YP_006863753.1|	-	0.014	15.8	0.1	0.015	15.6	0.1	1.1	1	0	0	1	1	1	0	Restriction	alleviation	protein	Lar
Prok-RING_1	PF14446.6	gi|408405770|ref|YP_006863753.1|	-	0.077	12.9	2.0	0.14	12.1	2.1	1.4	1	1	0	1	1	1	0	Prokaryotic	RING	finger	family	1
N6_N4_Mtase	PF01555.18	gi|408405771|ref|YP_006863754.1|	-	3.4e-39	134.9	0.0	4.6e-39	134.5	0.0	1.1	1	0	0	1	1	1	1	DNA	methylase
UPF0020	PF01170.18	gi|408405771|ref|YP_006863754.1|	-	0.042	13.5	0.0	0.54	9.9	0.0	2.2	2	0	0	2	2	2	0	Putative	RNA	methylase	family	UPF0020
Methyltransf_31	PF13847.6	gi|408405772|ref|YP_006863755.1|	-	1.5e-14	54.1	0.1	3.4e-14	52.9	0.1	1.4	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.6	gi|408405772|ref|YP_006863755.1|	-	3.3e-12	47.0	0.3	1.2e-11	45.2	0.1	1.9	2	0	0	2	2	2	1	Methyltransferase	domain
MTS	PF05175.14	gi|408405772|ref|YP_006863755.1|	-	9.8e-10	38.2	0.2	4.6e-09	36.0	0.2	2.1	1	1	0	1	1	1	1	Methyltransferase	small	domain
PrmA	PF06325.13	gi|408405772|ref|YP_006863755.1|	-	3.6e-09	36.4	0.9	4.6e-09	36.1	0.9	1.1	1	0	0	1	1	1	1	Ribosomal	protein	L11	methyltransferase	(PrmA)
Methyltransf_11	PF08241.12	gi|408405772|ref|YP_006863755.1|	-	6.1e-09	36.4	0.2	1.7e-08	35.0	0.0	1.8	2	0	0	2	2	2	1	Methyltransferase	domain
PCMT	PF01135.19	gi|408405772|ref|YP_006863755.1|	-	2.3e-08	34.0	0.1	2.9e-08	33.7	0.1	1.1	1	0	0	1	1	1	1	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
Methyltransf_18	PF12847.7	gi|408405772|ref|YP_006863755.1|	-	5.1e-08	33.0	0.1	7e-08	32.5	0.1	1.3	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_24	PF13578.6	gi|408405772|ref|YP_006863755.1|	-	2.3e-07	31.8	0.0	3.4e-07	31.2	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.12	gi|408405772|ref|YP_006863755.1|	-	3.7e-07	30.8	0.0	7.9e-07	29.8	0.0	1.6	1	0	0	1	1	1	1	Methyltransferase	domain
GCD14	PF08704.10	gi|408405772|ref|YP_006863755.1|	-	1.5e-06	28.1	0.0	2.1e-06	27.6	0.0	1.2	1	0	0	1	1	1	1	tRNA	methyltransferase	complex	GCD14	subunit
CMAS	PF02353.20	gi|408405772|ref|YP_006863755.1|	-	1.6e-06	27.7	0.1	2.1e-06	27.2	0.1	1.2	1	0	0	1	1	1	1	Mycolic	acid	cyclopropane	synthetase
Methyltransf_23	PF13489.6	gi|408405772|ref|YP_006863755.1|	-	7.1e-06	26.0	0.0	9.1e-06	25.6	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Cons_hypoth95	PF03602.15	gi|408405772|ref|YP_006863755.1|	-	1.1e-05	25.2	0.0	1.4e-05	24.8	0.0	1.2	1	0	0	1	1	1	1	Conserved	hypothetical	protein	95
Methyltransf_4	PF02390.17	gi|408405772|ref|YP_006863755.1|	-	1.7e-05	24.3	0.1	0.0031	17.0	0.0	2.1	2	0	0	2	2	2	1	Putative	methyltransferase
Ubie_methyltran	PF01209.18	gi|408405772|ref|YP_006863755.1|	-	2.5e-05	23.7	0.1	3.3e-05	23.3	0.1	1.2	1	0	0	1	1	1	1	ubiE/COQ5	methyltransferase	family
Methyltransf_15	PF09445.10	gi|408405772|ref|YP_006863755.1|	-	0.0003	20.4	0.1	0.00041	20.0	0.1	1.3	1	1	0	1	1	1	1	RNA	cap	guanine-N2	methyltransferase
Methyltransf_5	PF01795.19	gi|408405772|ref|YP_006863755.1|	-	0.00066	19.3	0.0	0.0031	17.1	0.0	1.9	1	1	1	2	2	2	1	MraW	methylase	family
UPF0020	PF01170.18	gi|408405772|ref|YP_006863755.1|	-	0.00091	19.0	0.9	0.026	14.2	0.5	2.5	1	1	0	1	1	1	1	Putative	RNA	methylase	family	UPF0020
Met_10	PF02475.16	gi|408405772|ref|YP_006863755.1|	-	0.00096	19.0	0.0	0.0013	18.5	0.0	1.2	1	0	0	1	1	1	1	Met-10+	like-protein
Methyltransf_32	PF13679.6	gi|408405772|ref|YP_006863755.1|	-	0.0012	18.9	0.0	0.0018	18.3	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltr_RsmB-F	PF01189.17	gi|408405772|ref|YP_006863755.1|	-	0.0014	18.3	0.1	0.047	13.3	0.0	2.1	2	0	0	2	2	2	1	16S	rRNA	methyltransferase	RsmB/F
DOT1	PF08123.13	gi|408405772|ref|YP_006863755.1|	-	0.0023	17.5	0.3	0.019	14.5	0.0	1.9	2	0	0	2	2	2	1	Histone	methylation	protein	DOT1
Spermine_synth	PF01564.17	gi|408405772|ref|YP_006863755.1|	-	0.0023	17.3	0.1	0.0041	16.6	0.1	1.4	1	1	0	1	1	1	1	Spermine/spermidine	synthase	domain
RrnaAD	PF00398.20	gi|408405772|ref|YP_006863755.1|	-	0.0031	16.6	0.0	0.0046	16.1	0.0	1.2	1	0	0	1	1	1	1	Ribosomal	RNA	adenine	dimethylase
GidB	PF02527.15	gi|408405772|ref|YP_006863755.1|	-	0.0033	16.8	0.1	0.0069	15.7	0.1	1.3	1	1	0	1	1	1	1	rRNA	small	subunit	methyltransferase	G
Methyltransf_3	PF01596.17	gi|408405772|ref|YP_006863755.1|	-	0.0036	16.5	0.1	0.0063	15.7	0.1	1.4	1	1	0	1	1	1	1	O-methyltransferase
NNMT_PNMT_TEMT	PF01234.17	gi|408405772|ref|YP_006863755.1|	-	0.0062	15.8	0.1	0.48	9.6	0.1	2.1	2	0	0	2	2	2	1	NNMT/PNMT/TEMT	family
AviRa	PF11599.8	gi|408405772|ref|YP_006863755.1|	-	0.0065	16.0	0.0	0.012	15.1	0.0	1.4	1	0	0	1	1	1	1	RRNA	methyltransferase	AviRa
TrmK	PF04816.12	gi|408405772|ref|YP_006863755.1|	-	0.0071	15.9	0.2	0.012	15.2	0.1	1.4	1	1	0	1	1	1	1	tRNA	(adenine(22)-N(1))-methyltransferase
POR	PF01558.18	gi|408405772|ref|YP_006863755.1|	-	0.01	15.9	0.2	0.024	14.7	0.1	1.5	1	1	0	1	1	1	0	Pyruvate	ferredoxin/flavodoxin	oxidoreductase
NodS	PF05401.11	gi|408405772|ref|YP_006863755.1|	-	0.014	15.0	0.2	0.039	13.6	0.0	1.7	2	0	0	2	2	2	0	Nodulation	protein	S	(NodS)
FtsJ	PF01728.19	gi|408405772|ref|YP_006863755.1|	-	0.032	14.4	0.0	0.81	9.8	0.0	2.0	2	0	0	2	2	2	0	FtsJ-like	methyltransferase
rRNA_methylase	PF06962.12	gi|408405772|ref|YP_006863755.1|	-	0.055	13.5	0.2	0.86	9.6	0.0	2.3	1	1	1	2	2	2	0	Putative	rRNA	methylase
MetW	PF07021.12	gi|408405772|ref|YP_006863755.1|	-	0.14	11.7	0.1	0.18	11.4	0.1	1.2	1	0	0	1	1	1	0	Methionine	biosynthesis	protein	MetW
Romo1	PF10247.9	gi|408405773|ref|YP_006863756.1|	-	0.019	15.3	0.9	3.7	8.0	0.2	2.4	2	0	0	2	2	2	0	Reactive	mitochondrial	oxygen	species	modulator	1
FbpA	PF05833.11	gi|408405775|ref|YP_006863758.1|	-	3.5e-33	115.1	3.4	4.6e-33	114.7	3.4	1.1	1	0	0	1	1	1	1	Fibronectin-binding	protein	A	N-terminus	(FbpA)
NFACT-R_1	PF05670.13	gi|408405775|ref|YP_006863758.1|	-	1.5e-23	83.5	0.0	1.1e-22	80.8	0.0	2.3	2	0	0	2	2	2	1	NFACT	protein	RNA	binding	domain
KLRAQ	PF10205.9	gi|408405775|ref|YP_006863758.1|	-	0.052	13.8	6.5	0.91	9.8	0.4	2.7	2	0	0	2	2	2	0	Predicted	coiled-coil	domain-containing	protein
Ribosomal_S13	PF00416.22	gi|408405775|ref|YP_006863758.1|	-	0.053	13.9	0.5	0.17	12.3	0.1	2.1	2	0	0	2	2	2	0	Ribosomal	protein	S13/S18
H2TH	PF06831.14	gi|408405775|ref|YP_006863758.1|	-	0.086	12.8	0.0	0.44	10.6	0.0	2.2	1	0	0	1	1	1	0	Formamidopyrimidine-DNA	glycosylase	H2TH	domain
baeRF_family2	PF18844.1	gi|408405775|ref|YP_006863758.1|	-	0.14	12.2	2.4	0.37	10.8	2.4	1.7	1	0	0	1	1	1	0	Bacterial	archaeo-eukaryotic	release	factor	family	2
DUF202	PF02656.15	gi|408405776|ref|YP_006863759.1|	-	0.62	10.6	4.1	0.77	10.2	4.1	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF202)
CBS	PF00571.28	gi|408405777|ref|YP_006863760.1|	-	7.1e-25	87.2	3.7	5.8e-14	52.3	0.7	2.3	2	0	0	2	2	2	2	CBS	domain
TF_Zn_Ribbon	PF08271.12	gi|408405777|ref|YP_006863760.1|	-	0.013	15.0	2.0	0.028	13.9	2.0	1.6	1	0	0	1	1	1	0	TFIIB	zinc-binding
ABC2_membrane_3	PF12698.7	gi|408405777|ref|YP_006863760.1|	-	0.051	12.7	0.0	0.57	9.2	0.0	1.9	1	1	0	1	1	1	0	ABC-2	family	transporter	protein
TmoB	PF06234.12	gi|408405777|ref|YP_006863760.1|	-	0.8	9.8	3.1	5.4	7.2	0.1	2.6	3	0	0	3	3	3	0	Toluene-4-monooxygenase	system	protein	B	(TmoB)
Rubredoxin_2	PF18073.1	gi|408405777|ref|YP_006863760.1|	-	0.91	9.3	3.6	0.53	10.1	0.3	2.0	2	0	0	2	2	2	0	Rubredoxin	metal	binding	domain
Mut7-C	PF01927.16	gi|408405778|ref|YP_006863761.1|	-	4.4e-38	130.7	0.0	5e-38	130.5	0.0	1.0	1	0	0	1	1	1	1	Mut7-C	RNAse	domain
DUF5615	PF18480.1	gi|408405778|ref|YP_006863761.1|	-	2e-06	27.5	0.0	6.4e-06	25.8	0.0	1.8	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF5615)
Zf_RING	PF16744.5	gi|408405778|ref|YP_006863761.1|	-	0.0072	16.4	0.2	0.029	14.5	0.0	2.0	2	0	0	2	2	2	1	KIAA1045	RING	finger
PIN_9	PF18477.1	gi|408405778|ref|YP_006863761.1|	-	0.043	14.1	0.0	0.088	13.1	0.0	1.5	1	0	0	1	1	1	0	PIN	like	domain
zf-C2H2_4	PF13894.6	gi|408405778|ref|YP_006863761.1|	-	0.25	12.3	1.0	2.4	9.3	0.1	2.4	2	0	0	2	2	2	0	C2H2-type	zinc	finger
vATP-synt_E	PF01991.18	gi|408405779|ref|YP_006863762.1|	-	7.7e-24	84.2	9.8	1.3e-23	83.4	9.4	1.5	1	1	0	1	1	1	1	ATP	synthase	(E/31	kDa)	subunit
Apolipoprotein	PF01442.18	gi|408405779|ref|YP_006863762.1|	-	0.0028	17.6	8.6	0.042	13.7	4.4	2.1	1	1	0	2	2	2	2	Apolipoprotein	A1/A4/E	domain
RE_HaeII	PF09554.10	gi|408405779|ref|YP_006863762.1|	-	0.021	14.1	0.2	0.042	13.1	0.2	1.5	1	0	0	1	1	1	0	HaeII	restriction	endonuclease
DUF371	PF04027.13	gi|408405779|ref|YP_006863762.1|	-	0.028	14.4	1.6	0.26	11.2	0.9	2.4	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF371)
UPF0254	PF06787.11	gi|408405779|ref|YP_006863762.1|	-	0.045	13.5	0.2	0.088	12.6	0.2	1.5	1	0	0	1	1	1	0	Uncharacterised	protein	family	(UPF0254)
CorA	PF01544.18	gi|408405779|ref|YP_006863762.1|	-	0.12	11.7	0.1	0.62	9.3	0.0	2.0	1	1	0	1	1	1	0	CorA-like	Mg2+	transporter	protein
UN_NPL4	PF11543.8	gi|408405779|ref|YP_006863762.1|	-	0.13	12.8	1.2	0.74	10.3	0.0	2.6	3	0	0	3	3	3	0	Nuclear	pore	localisation	protein	NPL4
DUF1525	PF07511.11	gi|408405779|ref|YP_006863762.1|	-	0.15	12.2	3.1	2.2	8.5	1.1	2.5	2	1	1	3	3	3	0	Protein	of	unknown	function	(DUF1525)
Band_7	PF01145.25	gi|408405779|ref|YP_006863762.1|	-	0.21	11.6	3.8	0.62	10.0	3.8	1.9	1	1	0	1	1	1	0	SPFH	domain	/	Band	7	family
V-ATPase_G_2	PF16999.5	gi|408405779|ref|YP_006863762.1|	-	0.51	10.8	12.1	2	8.8	9.1	2.7	2	1	0	2	2	2	0	Vacuolar	(H+)-ATPase	G	subunit
KxDL	PF10241.9	gi|408405779|ref|YP_006863762.1|	-	0.89	9.9	6.0	2.7	8.3	0.5	3.2	2	1	1	3	3	3	0	Uncharacterized	conserved	protein
DP	PF08781.10	gi|408405779|ref|YP_006863762.1|	-	0.91	9.4	4.2	0.35	10.7	0.9	2.0	2	0	0	2	2	2	0	Transcription	factor	DP
DUF4407	PF14362.6	gi|408405779|ref|YP_006863762.1|	-	1.2	8.4	8.3	1.9	7.7	8.3	1.4	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4407)
APG6_N	PF17675.1	gi|408405779|ref|YP_006863762.1|	-	2.6	8.6	6.3	15	6.2	6.0	2.0	2	0	0	2	2	2	0	Apg6	coiled-coil	region
ABC_membrane	PF00664.23	gi|408405779|ref|YP_006863762.1|	-	3.4	7.2	3.7	33	4.0	0.0	2.7	3	0	0	3	3	3	0	ABC	transporter	transmembrane	region
ATP-synt_ab	PF00006.25	gi|408405780|ref|YP_006863763.1|	-	6.8e-92	306.9	0.0	9e-92	306.5	0.0	1.2	1	0	0	1	1	1	1	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
ATP-synt_ab_Xtn	PF16886.5	gi|408405780|ref|YP_006863763.1|	-	6.7e-42	142.2	0.0	1.2e-41	141.4	0.0	1.4	1	0	0	1	1	1	1	ATPsynthase	alpha/beta	subunit	N-term	extension
ATP-synt_ab_N	PF02874.23	gi|408405780|ref|YP_006863763.1|	-	2.3e-14	53.6	4.0	2.8e-14	53.4	0.4	2.8	3	0	0	3	3	3	1	ATP	synthase	alpha/beta	family,	beta-barrel	domain
AAA_22	PF13401.6	gi|408405780|ref|YP_006863763.1|	-	0.053	13.8	0.0	0.11	12.7	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
ATP-synt_ab	PF00006.25	gi|408405781|ref|YP_006863764.1|	-	2.5e-68	229.9	0.0	3.6e-68	229.4	0.0	1.2	1	0	0	1	1	1	1	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
ATP-synt_ab_N	PF02874.23	gi|408405781|ref|YP_006863764.1|	-	4.3e-09	36.8	0.8	1.1e-08	35.4	0.8	1.8	1	0	0	1	1	1	1	ATP	synthase	alpha/beta	family,	beta-barrel	domain
HAS-barrel	PF09378.10	gi|408405781|ref|YP_006863764.1|	-	0.003	17.7	0.5	0.015	15.4	0.4	2.2	2	0	0	2	2	2	1	HAS	barrel	domain
ATP-synt_D	PF01813.17	gi|408405782|ref|YP_006863765.1|	-	4.6e-51	173.4	5.5	5.3e-51	173.3	5.5	1.0	1	0	0	1	1	1	1	ATP	synthase	subunit	D
RNA_binding	PF01877.17	gi|408405782|ref|YP_006863765.1|	-	0.001	19.3	5.1	0.33	11.3	0.5	2.2	2	0	0	2	2	2	2	RNA	binding
DUF16	PF01519.16	gi|408405782|ref|YP_006863765.1|	-	0.22	12.0	2.1	13	6.3	0.2	2.9	1	1	2	3	3	3	0	Protein	of	unknown	function	DUF16
ATP-synt_C	PF00137.21	gi|408405783|ref|YP_006863766.1|	-	9.6e-17	61.1	18.1	1.3e-16	60.7	18.1	1.2	1	0	0	1	1	1	1	ATP	synthase	subunit	C
Phage_holin_3_6	PF07332.11	gi|408405783|ref|YP_006863766.1|	-	4.2	7.4	8.6	5.8	7.0	8.6	1.2	1	0	0	1	1	1	0	Putative	Actinobacterial	Holin-X,	holin	superfamily	III
V_ATPase_I	PF01496.19	gi|408405784|ref|YP_006863767.1|	-	7.8e-29	100.2	1.8	4.4e-22	77.9	0.0	3.3	3	0	0	3	3	3	3	V-type	ATPase	116kDa	subunit	family
FlaC_arch	PF05377.11	gi|408405784|ref|YP_006863767.1|	-	0.11	12.9	0.7	0.51	10.8	0.7	2.2	1	0	0	1	1	1	0	Flagella	accessory	protein	C	(FlaC)
Prefoldin	PF02996.17	gi|408405784|ref|YP_006863767.1|	-	6.1	6.8	8.4	7.8	6.4	2.7	2.8	2	1	0	2	2	2	0	Prefoldin	subunit
vATP-synt_AC39	PF01992.16	gi|408405785|ref|YP_006863768.1|	-	1.6e-56	192.3	3.3	2e-56	191.9	3.3	1.0	1	0	0	1	1	1	1	ATP	synthase	(C/AC39)	subunit
TMP_2	PF06791.13	gi|408405785|ref|YP_006863768.1|	-	0.0093	15.7	0.6	0.032	13.9	0.0	2.2	3	0	0	3	3	3	1	Prophage	tail	length	tape	measure	protein
Trigger_N	PF05697.13	gi|408405785|ref|YP_006863768.1|	-	0.011	16.1	1.0	0.028	14.8	0.0	2.1	3	0	0	3	3	3	0	Bacterial	trigger	factor	protein	(TF)
Ribophorin_II	PF05817.14	gi|408405786|ref|YP_006863769.1|	-	0.022	13.3	0.3	0.024	13.2	0.3	1.1	1	0	0	1	1	1	0	Oligosaccharyltransferase	subunit	Ribophorin	II
DUF4191	PF13829.6	gi|408405786|ref|YP_006863769.1|	-	0.18	11.1	0.0	0.18	11.1	0.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4191)
P5-ATPase	PF12409.8	gi|408405787|ref|YP_006863770.1|	-	0.1	12.7	0.0	0.13	12.4	0.0	1.1	1	0	0	1	1	1	0	P5-type	ATPase	cation	transporter
OrfB_Zn_ribbon	PF07282.11	gi|408405788|ref|YP_006863771.1|	-	2.3e-21	75.5	0.6	4.5e-21	74.6	0.6	1.5	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
OrfB_IS605	PF01385.19	gi|408405788|ref|YP_006863771.1|	-	4.2e-05	23.8	0.4	8.4e-05	22.8	0.4	1.5	1	0	0	1	1	1	1	Probable	transposase
RuvC_1	PF18516.1	gi|408405788|ref|YP_006863771.1|	-	0.0054	16.0	0.8	0.12	11.5	0.8	2.1	1	1	0	1	1	1	1	RuvC	nuclease	domain
PhnA_Zn_Ribbon	PF08274.12	gi|408405788|ref|YP_006863771.1|	-	0.024	14.6	2.2	0.042	13.8	2.2	1.4	1	0	0	1	1	1	0	PhnA	Zinc-Ribbon
OmpH	PF03938.14	gi|408405788|ref|YP_006863771.1|	-	0.045	14.1	0.1	0.071	13.4	0.1	1.2	1	0	0	1	1	1	0	Outer	membrane	protein	(OmpH-like)
TF_Zn_Ribbon	PF08271.12	gi|408405788|ref|YP_006863771.1|	-	0.054	13.0	2.7	0.1	12.2	2.7	1.4	1	0	0	1	1	1	0	TFIIB	zinc-binding
DZR	PF12773.7	gi|408405788|ref|YP_006863771.1|	-	0.08	13.0	1.3	0.15	12.1	1.3	1.3	1	0	0	1	1	1	0	Double	zinc	ribbon
Zn_Tnp_IS1595	PF12760.7	gi|408405788|ref|YP_006863771.1|	-	0.17	11.9	2.0	0.34	10.9	2.0	1.5	1	0	0	1	1	1	0	Transposase	zinc-ribbon	domain
Phage_holin_3_6	PF07332.11	gi|408405789|ref|YP_006863772.1|	-	0.024	14.6	0.7	0.031	14.3	0.7	1.1	1	0	0	1	1	1	0	Putative	Actinobacterial	Holin-X,	holin	superfamily	III
Ca_chan_IQ	PF08763.11	gi|408405789|ref|YP_006863772.1|	-	0.092	13.0	0.1	0.18	12.0	0.1	1.6	1	1	0	1	1	1	0	Voltage	gated	calcium	channel	IQ	domain
DUF5325	PF17259.2	gi|408405789|ref|YP_006863772.1|	-	1.7	8.6	7.0	3.4	7.6	6.7	1.6	1	1	1	2	2	2	0	Family	of	unknown	function	(DUF5325)
DUF4059	PF13268.6	gi|408405790|ref|YP_006863773.1|	-	0.019	15.4	0.5	0.025	15.0	0.1	1.4	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF4059)
PyrI	PF01948.18	gi|408405791|ref|YP_006863774.1|	-	3.5e-32	110.5	2.4	3.5e-32	110.5	2.4	1.8	2	0	0	2	2	2	1	Aspartate	carbamoyltransferase	regulatory	chain,	allosteric	domain
PyrI_C	PF02748.15	gi|408405791|ref|YP_006863774.1|	-	2.2e-16	59.5	1.4	4.3e-16	58.5	1.4	1.5	1	0	0	1	1	1	1	Aspartate	carbamoyltransferase	regulatory	chain,	metal	binding	domain
DZR	PF12773.7	gi|408405792|ref|YP_006863775.1|	-	0.00026	20.9	7.4	0.00081	19.4	7.5	1.7	1	1	1	2	2	2	1	Double	zinc	ribbon
Ribosomal_L37e	PF01907.19	gi|408405792|ref|YP_006863775.1|	-	0.22	11.7	12.6	0.46	10.7	0.7	2.2	1	1	1	2	2	2	0	Ribosomal	protein	L37e
zinc_ribbon_9	PF14369.6	gi|408405792|ref|YP_006863775.1|	-	0.44	10.9	0.0	0.44	10.9	0.0	3.4	3	1	1	4	4	4	0	zinc-ribbon
DUF2797	PF10977.8	gi|408405792|ref|YP_006863775.1|	-	0.51	10.2	10.2	0.14	12.0	2.6	2.0	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF2797)
zinc_ribbon_2	PF13240.6	gi|408405792|ref|YP_006863775.1|	-	0.72	9.6	0.1	0.72	9.6	0.1	3.6	4	0	0	4	4	4	0	zinc-ribbon	domain
NMD3	PF04981.13	gi|408405792|ref|YP_006863775.1|	-	1.3	8.5	7.9	5	6.5	1.7	2.0	2	0	0	2	2	2	0	NMD3	family
zf-C2H2_4	PF13894.6	gi|408405792|ref|YP_006863775.1|	-	1.3	10.0	0.1	1.3	10.0	0.1	3.5	3	1	1	4	4	4	0	C2H2-type	zinc	finger
HypA	PF01155.19	gi|408405792|ref|YP_006863775.1|	-	1.9	8.5	7.7	0.96	9.5	0.5	2.1	1	1	1	2	2	2	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
Thioredoxin_10	PF17991.1	gi|408405793|ref|YP_006863776.1|	-	3.9e-35	121.5	0.0	6.4e-35	120.8	0.0	1.3	1	0	0	1	1	1	1	Thioredoxin	like	C-terminal	domain
AhpC-TSA	PF00578.21	gi|408405793|ref|YP_006863776.1|	-	4.3e-14	52.5	0.1	7.2e-14	51.8	0.1	1.3	1	0	0	1	1	1	1	AhpC/TSA	family
Redoxin	PF08534.10	gi|408405793|ref|YP_006863776.1|	-	2.8e-12	46.6	0.1	1e-11	44.7	0.0	1.9	1	1	1	2	2	2	1	Redoxin
Thioredoxin_8	PF13905.6	gi|408405793|ref|YP_006863776.1|	-	3.5e-08	33.6	0.1	6.5e-08	32.8	0.1	1.4	1	0	0	1	1	1	1	Thioredoxin-like
GSHPx	PF00255.19	gi|408405793|ref|YP_006863776.1|	-	0.00044	19.8	0.0	0.0014	18.2	0.0	1.8	2	0	0	2	2	2	1	Glutathione	peroxidase
Poly_export	PF02563.16	gi|408405793|ref|YP_006863776.1|	-	0.064	13.5	0.1	1.9	8.8	0.0	2.7	3	0	0	3	3	3	0	Polysaccharide	biosynthesis/export	protein
Thioredoxin	PF00085.20	gi|408405793|ref|YP_006863776.1|	-	0.16	12.0	0.0	0.37	10.8	0.0	1.6	1	0	0	1	1	1	0	Thioredoxin
DsbD	PF02683.15	gi|408405794|ref|YP_006863777.1|	-	1.5e-47	162.3	18.5	7.7e-47	159.9	18.5	1.8	1	1	0	1	1	1	1	Cytochrome	C	biogenesis	protein	transmembrane	region
DsbD_2	PF13386.6	gi|408405794|ref|YP_006863777.1|	-	8.4e-06	25.8	16.6	1.2e-05	25.3	16.5	1.4	1	1	0	1	1	1	1	Cytochrome	C	biogenesis	protein	transmembrane	region
DUF2182	PF09948.9	gi|408405794|ref|YP_006863777.1|	-	0.023	14.6	3.8	0.026	14.4	0.8	2.1	1	1	0	2	2	2	0	Predicted	metal-binding	integral	membrane	protein	(DUF2182)
SfLAP	PF11139.8	gi|408405794|ref|YP_006863777.1|	-	7.6	5.9	14.5	28	4.1	14.5	1.9	1	1	0	1	1	1	0	Sap,	sulfolipid-1-addressing	protein
DUF2614	PF11023.8	gi|408405795|ref|YP_006863778.1|	-	0.5	10.5	3.6	0.78	9.8	3.6	1.3	1	0	0	1	1	1	0	Zinc-ribbon	containing	domain
HTH_5	PF01022.20	gi|408405796|ref|YP_006863779.1|	-	1e-08	34.9	0.0	2e-08	33.9	0.0	1.5	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_20	PF12840.7	gi|408405796|ref|YP_006863779.1|	-	2.1e-05	24.5	0.0	4.6e-05	23.4	0.0	1.6	2	0	0	2	2	1	1	Helix-turn-helix	domain
TrmB	PF01978.19	gi|408405796|ref|YP_006863779.1|	-	8.8e-05	22.3	0.0	0.00014	21.7	0.0	1.2	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_24	PF13412.6	gi|408405796|ref|YP_006863779.1|	-	0.00026	20.5	0.0	0.00054	19.5	0.0	1.5	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_19	PF12844.7	gi|408405796|ref|YP_006863779.1|	-	0.00078	19.4	0.2	0.0012	18.8	0.2	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
MarR_2	PF12802.7	gi|408405796|ref|YP_006863779.1|	-	0.0016	18.3	0.0	0.0043	16.9	0.0	1.8	1	1	0	1	1	1	1	MarR	family
Phage_rep_O	PF04492.13	gi|408405796|ref|YP_006863779.1|	-	0.014	15.9	0.0	0.021	15.4	0.0	1.2	1	0	0	1	1	1	0	Bacteriophage	replication	protein	O
HTH_45	PF14947.6	gi|408405796|ref|YP_006863779.1|	-	0.015	15.3	0.1	0.024	14.6	0.1	1.2	1	0	0	1	1	1	0	Winged	helix-turn-helix
DUF4423	PF14394.6	gi|408405796|ref|YP_006863779.1|	-	0.015	15.0	0.0	0.022	14.5	0.0	1.3	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4423)
DprA_WH	PF17782.1	gi|408405796|ref|YP_006863779.1|	-	0.018	15.1	0.0	0.026	14.6	0.0	1.2	1	0	0	1	1	1	0	DprA	winged	helix	domain
MarR	PF01047.22	gi|408405796|ref|YP_006863779.1|	-	0.021	14.7	0.0	0.038	13.9	0.0	1.4	1	0	0	1	1	1	0	MarR	family
HTH_29	PF13551.6	gi|408405796|ref|YP_006863779.1|	-	0.024	14.7	0.0	0.18	11.8	0.0	2.0	2	0	0	2	2	2	0	Winged	helix-turn	helix
HTH_11	PF08279.12	gi|408405796|ref|YP_006863779.1|	-	0.025	14.5	0.0	0.053	13.5	0.0	1.6	2	0	0	2	2	2	0	HTH	domain
HTH_28	PF13518.6	gi|408405796|ref|YP_006863779.1|	-	0.045	13.9	0.0	0.072	13.2	0.0	1.3	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_10	PF04967.12	gi|408405796|ref|YP_006863779.1|	-	0.091	12.6	0.0	0.18	11.7	0.0	1.5	1	0	0	1	1	1	0	HTH	DNA	binding	domain
Rrf2	PF02082.20	gi|408405796|ref|YP_006863779.1|	-	0.092	13.1	0.0	0.15	12.4	0.0	1.3	1	0	0	1	1	1	0	Transcriptional	regulator
UDPG_MGDP_dh	PF00984.19	gi|408405796|ref|YP_006863779.1|	-	0.15	12.2	0.9	3.3	8.0	0.1	2.1	1	1	1	2	2	2	0	UDP-glucose/GDP-mannose	dehydrogenase	family,	central	domain
HTH_1	PF00126.27	gi|408405796|ref|YP_006863779.1|	-	0.18	11.7	0.0	0.3	11.1	0.0	1.3	1	0	0	1	1	1	0	Bacterial	regulatory	helix-turn-helix	protein,	lysR	family
DEAD	PF00270.29	gi|408405797|ref|YP_006863780.1|	-	4e-55	186.3	0.2	1.4e-53	181.3	0.0	2.2	2	0	0	2	2	2	1	DEAD/DEAH	box	helicase
Helicase_C	PF00271.31	gi|408405797|ref|YP_006863780.1|	-	3.6e-34	117.5	0.2	5.7e-33	113.6	0.2	2.3	2	0	0	2	2	2	1	Helicase	conserved	C-terminal	domain
ResIII	PF04851.15	gi|408405797|ref|YP_006863780.1|	-	4.3e-06	26.9	0.0	1.4e-05	25.1	0.0	1.8	2	0	0	2	2	2	1	Type	III	restriction	enzyme,	res	subunit
AAA_19	PF13245.6	gi|408405797|ref|YP_006863780.1|	-	0.00017	21.9	0.4	0.7	10.2	0.1	2.3	1	1	1	2	2	2	2	AAA	domain
AAA_30	PF13604.6	gi|408405797|ref|YP_006863780.1|	-	0.00022	21.0	0.5	0.016	14.9	0.1	2.4	2	1	0	2	2	2	1	AAA	domain
Helicase_RecD	PF05127.14	gi|408405797|ref|YP_006863780.1|	-	0.00084	19.2	0.0	0.0028	17.5	0.0	1.9	2	0	0	2	2	2	1	Helicase
UTP25	PF06862.12	gi|408405797|ref|YP_006863780.1|	-	0.0011	17.8	0.2	0.0099	14.7	0.0	2.2	2	1	0	2	2	2	1	Utp25,	U3	small	nucleolar	RNA-associated	SSU	processome	protein	25
CMS1	PF14617.6	gi|408405797|ref|YP_006863780.1|	-	0.0011	18.3	0.1	0.0022	17.4	0.1	1.6	1	0	0	1	1	1	1	U3-containing	90S	pre-ribosomal	complex	subunit
Flavi_DEAD	PF07652.14	gi|408405797|ref|YP_006863780.1|	-	0.0018	18.3	0.1	0.31	11.0	0.1	2.5	2	1	0	2	2	2	1	Flavivirus	DEAD	domain
ERCC3_RAD25_C	PF16203.5	gi|408405797|ref|YP_006863780.1|	-	0.0029	16.9	0.1	0.0042	16.3	0.1	1.2	1	0	0	1	1	1	1	ERCC3/RAD25/XPB	C-terminal	helicase
LuxC	PF05893.14	gi|408405797|ref|YP_006863780.1|	-	0.11	11.5	0.1	0.67	8.9	0.0	1.9	1	1	1	2	2	2	0	Acyl-CoA	reductase	(LuxC)
DZR	PF12773.7	gi|408405798|ref|YP_006863781.1|	-	0.00084	19.3	0.5	0.0012	18.9	0.5	1.3	1	0	0	1	1	1	1	Double	zinc	ribbon
zinc_ribbon_2	PF13240.6	gi|408405798|ref|YP_006863781.1|	-	0.0039	16.9	1.1	0.0067	16.1	1.1	1.3	1	0	0	1	1	1	1	zinc-ribbon	domain
zinc_ribbon_15	PF17032.5	gi|408405798|ref|YP_006863781.1|	-	0.005	17.5	0.4	0.008	16.9	0.4	1.3	1	0	0	1	1	1	1	zinc-ribbon	family
UPF0547	PF10571.9	gi|408405798|ref|YP_006863781.1|	-	0.0089	16.1	3.2	0.015	15.4	3.2	1.3	1	0	0	1	1	1	1	Uncharacterised	protein	family	UPF0547
zf-ribbon_3	PF13248.6	gi|408405798|ref|YP_006863781.1|	-	0.012	15.0	2.1	0.019	14.4	2.1	1.3	1	0	0	1	1	1	0	zinc-ribbon	domain
DUF2116	PF09889.9	gi|408405798|ref|YP_006863781.1|	-	0.045	13.7	1.1	0.092	12.7	1.1	1.5	1	0	0	1	1	1	0	Uncharacterized	protein	containing	a	Zn-ribbon	(DUF2116)
MEDS	PF14417.6	gi|408405798|ref|YP_006863781.1|	-	0.23	11.3	0.0	0.35	10.7	0.0	1.2	1	0	0	1	1	1	0	MEDS:	MEthanogen/methylotroph,	DcmR	Sensory	domain
DHHC	PF01529.20	gi|408405798|ref|YP_006863781.1|	-	0.31	11.1	1.3	0.67	10.1	0.5	1.7	2	0	0	2	2	2	0	DHHC	palmitoyltransferase
zinc_ribbon_2	PF13240.6	gi|408405799|ref|YP_006863782.1|	-	1.9e-08	33.8	5.9	3.3e-08	33.0	5.9	1.3	1	0	0	1	1	1	1	zinc-ribbon	domain
DZR	PF12773.7	gi|408405799|ref|YP_006863782.1|	-	1.3e-05	25.1	1.0	1.9e-05	24.6	1.0	1.3	1	0	0	1	1	1	1	Double	zinc	ribbon
zf-ribbon_3	PF13248.6	gi|408405799|ref|YP_006863782.1|	-	4.9e-05	22.6	2.5	7.6e-05	22.0	2.5	1.3	1	0	0	1	1	1	1	zinc-ribbon	domain
zinc_ribbon_15	PF17032.5	gi|408405799|ref|YP_006863782.1|	-	0.00013	22.6	0.1	0.00015	22.5	0.1	1.2	1	0	0	1	1	1	1	zinc-ribbon	family
UPF0547	PF10571.9	gi|408405799|ref|YP_006863782.1|	-	0.0083	16.2	1.7	0.014	15.5	1.7	1.3	1	0	0	1	1	1	1	Uncharacterised	protein	family	UPF0547
Nudix_N_2	PF14803.6	gi|408405799|ref|YP_006863782.1|	-	0.021	14.8	8.4	0.27	11.2	0.3	2.7	3	0	0	3	3	3	0	Nudix	N-terminal
RNA_POL_M_15KD	PF02150.16	gi|408405799|ref|YP_006863782.1|	-	0.055	13.3	3.9	2.2	8.2	0.4	2.5	2	0	0	2	2	2	0	RNA	polymerases	M/15	Kd	subunit
HypA	PF01155.19	gi|408405799|ref|YP_006863782.1|	-	0.13	12.3	0.6	0.18	11.8	0.6	1.3	1	0	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
YhfH	PF14149.6	gi|408405799|ref|YP_006863782.1|	-	0.39	10.7	6.0	2.5	8.1	0.3	2.3	1	1	1	2	2	2	0	YhfH-like	protein
NOB1_Zn_bind	PF08772.11	gi|408405799|ref|YP_006863782.1|	-	0.82	9.9	7.9	3.6	7.8	0.9	2.4	1	1	1	2	2	2	0	Nin	one	binding	(NOB1)	Zn-ribbon	like
RecR	PF02132.15	gi|408405799|ref|YP_006863782.1|	-	1.8	8.2	4.4	6.6	6.4	0.4	2.2	1	1	1	2	2	2	0	RecR	protein
AAA_18	PF13238.6	gi|408405800|ref|YP_006863783.1|	-	4.3e-11	43.5	0.1	6.5e-11	42.9	0.1	1.3	1	0	0	1	1	1	1	AAA	domain
AAA	PF00004.29	gi|408405800|ref|YP_006863783.1|	-	0.00011	22.6	0.1	0.00024	21.5	0.0	1.6	2	0	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
UPF0175	PF03683.13	gi|408405800|ref|YP_006863783.1|	-	0.023	14.4	0.1	0.063	13.0	0.0	1.7	1	1	0	1	1	1	0	Uncharacterised	protein	family	(UPF0175)
RuvB_N	PF05496.12	gi|408405800|ref|YP_006863783.1|	-	0.045	13.5	0.0	0.076	12.8	0.0	1.3	1	0	0	1	1	1	0	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
NTPase_1	PF03266.15	gi|408405800|ref|YP_006863783.1|	-	0.067	13.1	0.7	0.17	11.8	0.6	2.0	1	1	1	2	2	2	0	NTPase
SKI	PF01202.22	gi|408405800|ref|YP_006863783.1|	-	0.12	12.5	0.3	0.31	11.1	0.3	1.8	1	1	0	1	1	1	0	Shikimate	kinase
AAA_30	PF13604.6	gi|408405800|ref|YP_006863783.1|	-	0.16	11.7	0.2	0.25	11.1	0.2	1.5	1	1	0	1	1	1	0	AAA	domain
T2SSE	PF00437.20	gi|408405800|ref|YP_006863783.1|	-	0.16	11.0	0.6	0.31	10.0	0.3	1.6	2	0	0	2	2	2	0	Type	II/IV	secretion	system	protein
AHSA1	PF08327.11	gi|408405802|ref|YP_006863785.1|	-	0.042	14.1	0.1	0.056	13.7	0.1	1.3	1	0	0	1	1	1	0	Activator	of	Hsp90	ATPase	homolog	1-like	protein
Lsm_C	PF14894.6	gi|408405803|ref|YP_006863786.1|	-	1.4e-23	82.4	0.9	8.3e-23	79.9	0.1	2.1	2	0	0	2	2	2	1	Lsm	C-terminal
LSM	PF01423.22	gi|408405803|ref|YP_006863786.1|	-	1.5e-06	27.8	0.2	2.9e-06	26.9	0.2	1.5	1	0	0	1	1	1	1	LSM	domain
LSM14	PF12701.7	gi|408405803|ref|YP_006863786.1|	-	9.3e-06	25.7	0.1	1.1e-05	25.4	0.1	1.4	1	1	0	1	1	1	1	Scd6-like	Sm	domain
SM-ATX	PF14438.6	gi|408405803|ref|YP_006863786.1|	-	9.7e-05	22.4	0.1	0.00016	21.7	0.1	1.3	1	0	0	1	1	1	1	Ataxin	2	SM	domain
DUF150_C	PF17384.2	gi|408405803|ref|YP_006863786.1|	-	0.012	15.8	0.4	0.022	14.9	0.4	1.5	1	0	0	1	1	1	0	RimP	C-terminal	SH3	domain
Transposase_23	PF03017.14	gi|408405803|ref|YP_006863786.1|	-	0.052	13.5	0.0	0.082	12.9	0.0	1.3	1	0	0	1	1	1	0	TNP1/EN/SPM	transposase
TGT	PF01702.18	gi|408405804|ref|YP_006863787.1|	-	2.1e-72	244.2	0.0	2.7e-72	243.8	0.0	1.1	1	0	0	1	1	1	1	Queuine	tRNA-ribosyltransferase
DUF5591	PF17884.1	gi|408405804|ref|YP_006863787.1|	-	1.2e-09	38.2	0.0	2.5e-09	37.2	0.0	1.5	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF5591)
Endonuclease_5	PF04493.14	gi|408405805|ref|YP_006863788.1|	-	2.7e-45	154.5	0.2	3.4e-45	154.2	0.2	1.1	1	0	0	1	1	1	1	Endonuclease	V
Adeno_E3	PF06040.11	gi|408405806|ref|YP_006863789.1|	-	2.9	8.1	6.2	0.28	11.3	0.5	2.2	3	0	0	3	3	3	0	Adenovirus	E3	protein
Fer4	PF00037.27	gi|408405807|ref|YP_006863790.1|	-	7.7e-13	47.7	10.8	1.2e-07	31.3	0.5	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_6	PF12837.7	gi|408405807|ref|YP_006863790.1|	-	1.5e-09	37.5	8.9	0.00017	21.5	2.3	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_7	PF12838.7	gi|408405807|ref|YP_006863790.1|	-	2.1e-09	37.8	3.9	2.9e-09	37.4	3.9	1.2	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_21	PF14697.6	gi|408405807|ref|YP_006863790.1|	-	2.9e-08	33.7	1.6	4.2e-08	33.2	1.6	1.3	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_2	PF12797.7	gi|408405807|ref|YP_006863790.1|	-	5.4e-07	29.3	9.1	0.0013	18.7	2.3	2.3	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_13	PF13370.6	gi|408405807|ref|YP_006863790.1|	-	5.9e-07	29.9	5.0	0.0025	18.3	0.9	2.3	2	0	0	2	2	2	2	4Fe-4S	single	cluster	domain	of	Ferredoxin	I
Fer4_9	PF13187.6	gi|408405807|ref|YP_006863790.1|	-	1.3e-06	28.5	4.4	4.3e-06	26.8	4.6	1.7	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_10	PF13237.6	gi|408405807|ref|YP_006863790.1|	-	1.5e-06	28.2	14.1	0.00031	20.8	8.8	2.1	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_4	PF12800.7	gi|408405807|ref|YP_006863790.1|	-	1.6e-05	25.0	6.2	0.016	15.6	1.8	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_16	PF13484.6	gi|408405807|ref|YP_006863790.1|	-	0.00013	22.8	5.1	0.097	13.6	0.1	2.1	2	0	0	2	2	2	2	4Fe-4S	double	cluster	binding	domain
Fer4_15	PF13459.6	gi|408405807|ref|YP_006863790.1|	-	0.00042	21.0	10.9	0.0068	17.1	2.4	2.7	1	1	1	2	2	2	2	4Fe-4S	single	cluster	domain
Fer4_22	PF17179.4	gi|408405807|ref|YP_006863790.1|	-	0.00076	20.3	2.4	0.39	11.6	0.5	2.1	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_8	PF13183.6	gi|408405807|ref|YP_006863790.1|	-	0.00083	19.8	6.1	0.0069	16.8	6.1	2.0	1	1	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_3	PF12798.7	gi|408405807|ref|YP_006863790.1|	-	0.0017	19.1	13.4	0.27	12.3	1.7	2.3	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_17	PF13534.6	gi|408405807|ref|YP_006863790.1|	-	0.0025	18.3	7.2	0.094	13.3	7.2	2.1	1	1	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_18	PF13746.6	gi|408405807|ref|YP_006863790.1|	-	0.2	11.8	10.9	1.7	8.9	1.0	2.1	1	1	1	2	2	2	0	4Fe-4S	dicluster	domain
Methyltransf_23	PF13489.6	gi|408405809|ref|YP_006863792.1|	-	0.022	14.6	0.0	0.038	13.8	0.0	1.3	1	0	0	1	1	1	0	Methyltransferase	domain
MetW	PF07021.12	gi|408405809|ref|YP_006863792.1|	-	0.062	12.9	0.0	0.1	12.2	0.0	1.3	1	0	0	1	1	1	0	Methionine	biosynthesis	protein	MetW
Methyltransf_23	PF13489.6	gi|408405810|ref|YP_006863793.1|	-	0.0054	16.6	0.0	0.01	15.7	0.0	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.6	gi|408405810|ref|YP_006863793.1|	-	0.028	14.2	0.0	0.058	13.2	0.0	1.7	1	1	0	1	1	1	0	Methyltransferase	domain
MetW	PF07021.12	gi|408405810|ref|YP_006863793.1|	-	0.06	12.9	0.0	0.1	12.2	0.0	1.4	1	0	0	1	1	1	0	Methionine	biosynthesis	protein	MetW
Lactamase_B_6	PF16661.5	gi|408405811|ref|YP_006863794.1|	-	1e-13	51.2	0.0	2e-13	50.2	0.0	1.5	1	0	0	1	1	1	1	Metallo-beta-lactamase	superfamily	domain
Beta-Casp	PF10996.8	gi|408405811|ref|YP_006863794.1|	-	7.9e-13	48.7	0.0	1.9e-12	47.4	0.0	1.7	1	0	0	1	1	1	1	Beta-Casp	domain
RMMBL	PF07521.12	gi|408405811|ref|YP_006863794.1|	-	1.8e-10	40.6	0.0	9.5e-10	38.3	0.0	2.2	2	0	0	2	2	2	1	Zn-dependent	metallo-hydrolase	RNA	specificity	domain
Lactamase_B	PF00753.27	gi|408405811|ref|YP_006863794.1|	-	3.5e-10	40.2	0.3	7.5e-07	29.4	0.1	2.3	2	0	0	2	2	2	2	Metallo-beta-lactamase	superfamily
Lactamase_B_2	PF12706.7	gi|408405811|ref|YP_006863794.1|	-	5.8e-08	32.5	0.1	1.7e-07	31.0	0.1	1.7	1	1	0	1	1	1	1	Beta-lactamase	superfamily	domain
Lactamase_B_3	PF13483.6	gi|408405811|ref|YP_006863794.1|	-	4.3e-05	23.5	0.2	0.00012	22.0	0.2	1.6	1	1	0	1	1	1	1	Beta-lactamase	superfamily	domain
DUF2175	PF09943.9	gi|408405812|ref|YP_006863795.1|	-	0.0098	16.2	0.4	0.011	15.9	0.4	1.1	1	0	0	1	1	1	1	Uncharacterized	protein	conserved	in	archaea	(DUF2175)
zf-FCS	PF06467.14	gi|408405812|ref|YP_006863795.1|	-	0.02	14.8	0.7	0.03	14.3	0.7	1.4	1	1	0	1	1	1	0	MYM-type	Zinc	finger	with	FCS	sequence	motif
zf-3CxxC_2	PF17180.4	gi|408405812|ref|YP_006863795.1|	-	0.037	14.7	1.1	0.067	13.9	1.1	1.4	1	1	0	1	1	1	0	Zinc-binding	domain
zf-FLZ	PF04570.14	gi|408405812|ref|YP_006863795.1|	-	0.2	11.2	3.2	0.46	10.0	3.2	1.7	1	1	0	1	1	1	0	zinc-finger	of	the	FCS-type,	C2-C2
Bactofilin	PF04519.13	gi|408405813|ref|YP_006863796.1|	-	0.00055	20.2	2.7	0.32	11.3	0.3	2.0	1	1	1	2	2	2	2	Polymer-forming	cytoskeletal
Metallophos_2	PF12850.7	gi|408405813|ref|YP_006863796.1|	-	0.15	12.3	0.3	0.39	10.9	0.2	1.6	1	1	1	2	2	2	0	Calcineurin-like	phosphoesterase	superfamily	domain
tRNA-synt_1e	PF01406.19	gi|408405814|ref|YP_006863797.1|	-	1.2e-125	418.9	0.0	1.8e-125	418.3	0.0	1.2	1	0	0	1	1	1	1	tRNA	synthetases	class	I	(C)	catalytic	domain
tRNA-synt_1g	PF09334.11	gi|408405814|ref|YP_006863797.1|	-	4.4e-14	52.0	1.0	1.9e-07	30.2	0.2	2.1	2	0	0	2	2	2	2	tRNA	synthetases	class	I	(M)
DALR_2	PF09190.11	gi|408405814|ref|YP_006863797.1|	-	7.2e-09	36.0	3.4	1.5e-08	35.0	2.6	2.0	2	0	0	2	2	2	1	DALR	domain
tRNA-synt_1	PF00133.22	gi|408405814|ref|YP_006863797.1|	-	8.1e-07	27.7	0.0	0.00011	20.7	0.0	2.2	2	0	0	2	2	2	2	tRNA	synthetases	class	I	(I,	L,	M	and	V)
tRNA-synt_1f	PF01921.18	gi|408405814|ref|YP_006863797.1|	-	2.2e-05	23.5	0.0	0.0064	15.4	0.0	2.2	2	0	0	2	2	2	2	tRNA	synthetases	class	I	(K)
tRNA-synt_1c	PF00749.21	gi|408405814|ref|YP_006863797.1|	-	0.013	14.5	0.6	1.4	7.7	0.2	2.8	2	1	0	2	2	2	0	tRNA	synthetases	class	I	(E	and	Q),	catalytic	domain
DUF1858	PF08984.11	gi|408405814|ref|YP_006863797.1|	-	0.013	15.7	0.0	0.031	14.5	0.0	1.6	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1858)
ARPC4	PF05856.12	gi|408405814|ref|YP_006863797.1|	-	0.044	13.4	0.2	0.092	12.3	0.2	1.4	1	0	0	1	1	1	0	ARP2/3	complex	20	kDa	subunit	(ARPC4)
DUF3289	PF11692.8	gi|408405814|ref|YP_006863797.1|	-	0.094	12.3	0.0	0.17	11.4	0.0	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3289)
Putative_PNPOx	PF01243.20	gi|408405815|ref|YP_006863798.1|	-	4.7e-12	45.9	0.0	7.2e-12	45.3	0.0	1.3	1	0	0	1	1	1	1	Pyridoxamine	5'-phosphate	oxidase
Pyridox_ox_2	PF12900.7	gi|408405815|ref|YP_006863798.1|	-	5.4e-07	29.7	0.0	6.5e-07	29.4	0.0	1.1	1	0	0	1	1	1	1	Pyridoxamine	5'-phosphate	oxidase
Pyrid_ox_like	PF16242.5	gi|408405815|ref|YP_006863798.1|	-	0.00012	21.6	0.0	0.00016	21.3	0.0	1.2	1	0	0	1	1	1	1	Pyridoxamine	5'-phosphate	oxidase	like
Pyridox_oxase_2	PF12766.7	gi|408405815|ref|YP_006863798.1|	-	0.014	16.0	0.0	0.023	15.3	0.0	1.4	1	0	0	1	1	1	0	Pyridoxamine	5'-phosphate	oxidase
DUF447	PF04289.12	gi|408405815|ref|YP_006863798.1|	-	0.048	13.4	0.0	0.059	13.1	0.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF447)
Fer4_13	PF13370.6	gi|408405815|ref|YP_006863798.1|	-	0.22	12.1	0.1	0.45	11.1	0.0	1.6	1	1	0	1	1	1	0	4Fe-4S	single	cluster	domain	of	Ferredoxin	I
Rieske	PF00355.26	gi|408405816|ref|YP_006863799.1|	-	3.1e-15	55.9	0.0	3.4e-15	55.7	0.0	1.1	1	0	0	1	1	1	1	Rieske	[2Fe-2S]	domain
Rieske_2	PF13806.6	gi|408405816|ref|YP_006863799.1|	-	1.9e-13	50.3	0.0	2.1e-13	50.1	0.0	1.0	1	0	0	1	1	1	1	Rieske-like	[2Fe-2S]	domain
DUF3918	PF13056.6	gi|408405817|ref|YP_006863800.1|	-	0.76	9.4	3.0	1.7	8.3	3.0	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3918)
AdoHcyase	PF05221.17	gi|408405818|ref|YP_006863801.1|	-	4.3e-56	190.3	0.0	3e-28	98.8	0.1	2.0	1	1	1	2	2	2	2	S-adenosyl-L-homocysteine	hydrolase
AdoHcyase_NAD	PF00670.21	gi|408405818|ref|YP_006863801.1|	-	9.8e-54	181.8	1.8	1.1e-53	181.7	0.3	1.8	2	0	0	2	2	2	1	S-adenosyl-L-homocysteine	hydrolase,	NAD	binding	domain
2-Hacid_dh_C	PF02826.19	gi|408405818|ref|YP_006863801.1|	-	1.4e-10	40.8	0.1	4e-10	39.4	0.1	1.8	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
IlvN	PF07991.12	gi|408405818|ref|YP_006863801.1|	-	5.4e-07	29.3	0.0	1.1e-06	28.4	0.0	1.5	1	0	0	1	1	1	1	Acetohydroxy	acid	isomeroreductase,	NADPH-binding	domain
AlaDh_PNT_C	PF01262.21	gi|408405818|ref|YP_006863801.1|	-	3.5e-05	23.2	1.6	3.5e-05	23.2	1.6	2.6	2	1	1	3	3	3	1	Alanine	dehydrogenase/PNT,	C-terminal	domain
THF_DHG_CYH_C	PF02882.19	gi|408405818|ref|YP_006863801.1|	-	0.0031	16.8	0.2	0.016	14.5	0.2	1.9	1	1	0	1	1	1	1	Tetrahydrofolate	dehydrogenase/cyclohydrolase,	NAD(P)-binding	domain
TrkA_N	PF02254.18	gi|408405818|ref|YP_006863801.1|	-	0.0031	17.7	0.1	0.0095	16.2	0.1	1.8	1	0	0	1	1	1	1	TrkA-N	domain
3HCDH_N	PF02737.18	gi|408405818|ref|YP_006863801.1|	-	0.36	10.7	2.7	0.36	10.7	0.5	2.0	2	0	0	2	2	2	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
tRNA-synt_1g	PF09334.11	gi|408405819|ref|YP_006863802.1|	-	7.5e-138	459.5	0.2	9.4e-138	459.2	0.2	1.1	1	0	0	1	1	1	1	tRNA	synthetases	class	I	(M)
tRNA-synt_1	PF00133.22	gi|408405819|ref|YP_006863802.1|	-	2.5e-17	62.4	0.7	1e-08	33.9	0.1	3.8	3	1	0	3	3	3	3	tRNA	synthetases	class	I	(I,	L,	M	and	V)
Anticodon_1	PF08264.13	gi|408405819|ref|YP_006863802.1|	-	5e-14	52.5	0.0	9.2e-14	51.7	0.0	1.4	1	0	0	1	1	1	1	Anticodon-binding	domain	of	tRNA
tRNA-synt_1e	PF01406.19	gi|408405819|ref|YP_006863802.1|	-	5.3e-12	45.7	0.3	8.8e-05	22.0	0.0	2.2	2	0	0	2	2	2	2	tRNA	synthetases	class	I	(C)	catalytic	domain
tRNA-synt_1f	PF01921.18	gi|408405819|ref|YP_006863802.1|	-	0.0038	16.2	0.1	0.13	11.1	0.0	2.8	3	0	0	3	3	3	1	tRNA	synthetases	class	I	(K)
DZR	PF12773.7	gi|408405819|ref|YP_006863802.1|	-	0.37	10.9	5.9	0.66	10.0	5.9	1.4	1	0	0	1	1	1	0	Double	zinc	ribbon
zf-Di19	PF05605.12	gi|408405819|ref|YP_006863802.1|	-	0.39	11.0	2.6	0.87	9.9	2.6	1.5	1	0	0	1	1	1	0	Drought	induced	19	protein	(Di19),	zinc-binding
TF_Zn_Ribbon	PF08271.12	gi|408405819|ref|YP_006863802.1|	-	2.5	7.7	7.1	0.23	11.0	1.8	2.0	2	0	0	2	2	2	0	TFIIB	zinc-binding
CTP_transf_like	PF01467.26	gi|408405820|ref|YP_006863803.1|	-	1.8e-13	50.9	0.0	2.3e-13	50.5	0.0	1.2	1	0	0	1	1	1	1	Cytidylyltransferase-like
TrkA_N	PF02254.18	gi|408405820|ref|YP_006863803.1|	-	0.0089	16.3	0.0	0.078	13.2	0.0	2.0	2	0	0	2	2	2	1	TrkA-N	domain
HIGH_NTase1	PF05636.11	gi|408405820|ref|YP_006863803.1|	-	0.03	13.5	0.0	0.083	12.1	0.0	1.6	2	0	0	2	2	2	0	HIGH	Nucleotidyl	Transferase
MS_channel	PF00924.18	gi|408405821|ref|YP_006863804.1|	-	6.2e-09	35.7	3.0	1.7e-08	34.3	2.9	1.6	1	1	0	1	1	1	1	Mechanosensitive	ion	channel
Pirin	PF02678.16	gi|408405823|ref|YP_006863806.1|	-	5.2e-33	113.2	0.7	1.7e-32	111.6	0.3	1.9	2	1	0	2	2	2	1	Pirin
Pirin_C_2	PF17954.1	gi|408405823|ref|YP_006863806.1|	-	4.2e-19	68.5	0.1	1.5e-18	66.7	0.0	1.8	2	0	0	2	2	2	1	Quercetinase	C-terminal	cupin	domain
Pirin_C	PF05726.13	gi|408405823|ref|YP_006863806.1|	-	6.5e-06	26.5	0.0	0.00033	21.0	0.0	2.2	2	0	0	2	2	2	1	Pirin	C-terminal	cupin	domain
Cupin_2	PF07883.11	gi|408405823|ref|YP_006863806.1|	-	6.5e-05	22.6	3.6	0.0013	18.4	0.1	3.2	3	1	1	4	4	4	1	Cupin	domain
DUF3412	PF11892.8	gi|408405823|ref|YP_006863806.1|	-	0.029	14.5	0.1	10	6.3	0.1	2.2	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF3412)
FMN_red	PF03358.15	gi|408405824|ref|YP_006863807.1|	-	7.9e-27	93.9	0.0	1e-26	93.5	0.0	1.1	1	0	0	1	1	1	1	NADPH-dependent	FMN	reductase
Flavodoxin_2	PF02525.17	gi|408405824|ref|YP_006863807.1|	-	1.4e-10	41.2	0.0	1.9e-10	40.8	0.0	1.2	1	0	0	1	1	1	1	Flavodoxin-like	fold
Flavodoxin_5	PF12724.7	gi|408405824|ref|YP_006863807.1|	-	0.0057	16.9	0.0	0.011	15.9	0.0	1.6	2	0	0	2	2	2	1	Flavodoxin	domain
Usp	PF00582.26	gi|408405824|ref|YP_006863807.1|	-	0.028	14.9	0.3	0.045	14.3	0.3	1.3	1	0	0	1	1	1	0	Universal	stress	protein	family
Pepsin-I3	PF06394.13	gi|408405824|ref|YP_006863807.1|	-	0.096	12.9	0.0	0.17	12.1	0.0	1.5	1	0	0	1	1	1	0	Pepsin	inhibitor-3-like	repeated	domain
Trypsin_2	PF13365.6	gi|408405826|ref|YP_006863809.1|	-	3.4e-36	125.4	1.0	4.7e-36	124.9	1.0	1.2	1	0	0	1	1	1	1	Trypsin-like	peptidase	domain
PDZ_2	PF13180.6	gi|408405826|ref|YP_006863809.1|	-	3.2e-16	59.4	0.1	7.7e-15	55.0	0.0	2.5	2	0	0	2	2	2	1	PDZ	domain
Trypsin	PF00089.26	gi|408405826|ref|YP_006863809.1|	-	6.9e-13	48.9	0.1	1.5e-12	47.8	0.1	1.5	1	1	0	1	1	1	1	Trypsin
PDZ_6	PF17820.1	gi|408405826|ref|YP_006863809.1|	-	1.4e-10	40.9	2.3	2e-10	40.4	0.1	2.4	3	0	0	3	3	3	1	PDZ	domain
PDZ	PF00595.24	gi|408405826|ref|YP_006863809.1|	-	5.6e-07	29.8	0.1	2.2e-06	27.9	0.0	2.0	2	0	0	2	2	2	1	PDZ	domain
Peptidase_S46	PF10459.9	gi|408405826|ref|YP_006863809.1|	-	0.009	14.7	0.1	0.96	8.0	0.2	2.2	2	0	0	2	2	2	2	Peptidase	S46
Tricorn_PDZ	PF14685.6	gi|408405826|ref|YP_006863809.1|	-	0.035	14.1	0.1	0.16	12.0	0.0	2.1	2	1	1	3	3	3	0	Tricorn	protease	PDZ	domain
PDZ_1	PF12812.7	gi|408405826|ref|YP_006863809.1|	-	0.081	13.0	0.0	0.21	11.6	0.0	1.7	1	0	0	1	1	1	0	PDZ-like	domain
GRASP55_65	PF04495.14	gi|408405826|ref|YP_006863809.1|	-	0.091	13.1	0.0	0.23	11.8	0.0	1.7	1	0	0	1	1	1	0	GRASP55/65	PDZ-like	domain
DUF31	PF01732.16	gi|408405826|ref|YP_006863809.1|	-	0.14	11.6	0.2	2	7.9	0.1	2.4	2	1	1	3	3	3	0	Putative	peptidase	(DUF31)
Peptidase_S7	PF00949.21	gi|408405826|ref|YP_006863809.1|	-	0.15	11.8	0.1	0.3	10.9	0.1	1.4	1	0	0	1	1	1	0	Peptidase	S7,	Flavivirus	NS3	serine	protease
SUI1	PF01253.22	gi|408405827|ref|YP_006863810.1|	-	7.8e-16	58.4	1.6	9.6e-16	58.1	1.6	1.1	1	0	0	1	1	1	1	Translation	initiation	factor	SUI1
Img2	PF05046.14	gi|408405827|ref|YP_006863810.1|	-	0.0094	16.2	0.1	0.012	15.9	0.1	1.3	1	1	0	1	1	1	1	Mitochondrial	large	subunit	ribosomal	protein	(Img2)
DUF2250	PF10007.9	gi|408405828|ref|YP_006863811.1|	-	4.2e-06	26.8	0.1	0.0012	19.0	0.2	3.0	2	1	1	3	3	3	1	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
MarR	PF01047.22	gi|408405828|ref|YP_006863811.1|	-	7.1e-06	25.9	0.1	2.1e-05	24.3	0.0	1.7	2	0	0	2	2	2	1	MarR	family
HTH_5	PF01022.20	gi|408405828|ref|YP_006863811.1|	-	0.00013	21.7	0.2	0.0003	20.6	0.2	1.6	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
MarR_2	PF12802.7	gi|408405828|ref|YP_006863811.1|	-	0.00019	21.3	0.0	0.00044	20.1	0.0	1.5	1	0	0	1	1	1	1	MarR	family
HTH_27	PF13463.6	gi|408405828|ref|YP_006863811.1|	-	0.0061	17.0	0.0	0.022	15.2	0.0	2.0	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
HTH_45	PF14947.6	gi|408405828|ref|YP_006863811.1|	-	0.0075	16.2	0.0	0.021	14.8	0.0	1.7	1	1	0	1	1	1	1	Winged	helix-turn-helix
HTH_24	PF13412.6	gi|408405828|ref|YP_006863811.1|	-	0.0081	15.7	0.0	0.013	15.0	0.0	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
Tropomyosin_1	PF12718.7	gi|408405828|ref|YP_006863811.1|	-	0.01	16.0	4.1	0.018	15.2	4.1	1.4	1	0	0	1	1	1	0	Tropomyosin	like
TrmB	PF01978.19	gi|408405828|ref|YP_006863811.1|	-	0.011	15.6	0.0	0.038	13.9	0.0	1.9	2	0	0	2	2	2	0	Sugar-specific	transcriptional	regulator	TrmB
HTH_IclR	PF09339.10	gi|408405828|ref|YP_006863811.1|	-	0.015	15.1	0.1	0.035	13.9	0.1	1.6	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
HTH_11	PF08279.12	gi|408405828|ref|YP_006863811.1|	-	0.022	14.7	0.0	0.05	13.5	0.0	1.6	1	0	0	1	1	1	0	HTH	domain
HTH_20	PF12840.7	gi|408405828|ref|YP_006863811.1|	-	0.028	14.5	0.1	0.049	13.7	0.1	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain
Laminin_G_3	PF13385.6	gi|408405828|ref|YP_006863811.1|	-	0.033	14.3	0.0	0.15	12.2	0.0	1.8	2	0	0	2	2	2	0	Concanavalin	A-like	lectin/glucanases	superfamily
HTH_Crp_2	PF13545.6	gi|408405828|ref|YP_006863811.1|	-	0.05	13.6	0.1	0.16	12.0	0.1	1.8	1	0	0	1	1	1	0	Crp-like	helix-turn-helix	domain
HTH_36	PF13730.6	gi|408405828|ref|YP_006863811.1|	-	0.064	13.2	0.1	0.37	10.8	0.0	2.1	2	0	0	2	2	2	0	Helix-turn-helix	domain
DUF4396	PF14342.6	gi|408405829|ref|YP_006863812.1|	-	3.8e-30	105.1	6.9	4.5e-30	104.9	6.9	1.0	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4396)
DUF2269	PF10027.9	gi|408405829|ref|YP_006863812.1|	-	0.016	15.3	3.3	0.016	15.3	3.3	1.5	1	1	0	1	1	1	0	Predicted	integral	membrane	protein	(DUF2269)
LapA_dom	PF06305.11	gi|408405829|ref|YP_006863812.1|	-	0.29	11.0	8.1	1.9	8.3	6.9	2.5	2	1	0	2	2	2	0	Lipopolysaccharide	assembly	protein	A	domain
DUF2062	PF09835.9	gi|408405829|ref|YP_006863812.1|	-	2.4	8.0	9.8	17	5.3	8.5	2.5	1	1	1	2	2	2	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2062)
PT-VENN	PF04829.13	gi|408405832|ref|YP_006863815.1|	-	0.028	14.5	0.3	0.028	14.5	0.3	1.1	1	0	0	1	1	1	0	Pre-toxin	domain	with	VENN	motif
DUF326	PF03860.16	gi|408405834|ref|YP_006863817.1|	-	5.7e-11	42.0	31.2	5.4e-07	29.4	13.9	2.2	2	0	0	2	2	2	2	Domain	of	Unknown	Function	(DUF326)
DUF4184	PF13803.6	gi|408405835|ref|YP_006863818.1|	-	1.1e-09	38.3	6.7	2e-09	37.5	6.7	1.5	1	1	0	1	1	1	1	Domain	of	unknown	function	(DUF4184)
YdjM	PF04307.14	gi|408405835|ref|YP_006863818.1|	-	1.4e-07	31.0	7.8	2.7e-07	30.0	7.8	1.5	1	1	0	1	1	1	1	LexA-binding,	inner	membrane-associated	putative	hydrolase
Zn_dep_PLPC	PF00882.18	gi|408405835|ref|YP_006863818.1|	-	0.00051	20.1	0.0	0.0031	17.6	0.0	2.0	1	1	0	1	1	1	1	Zinc	dependent	phospholipase	C
DUF2127	PF09900.9	gi|408405836|ref|YP_006863819.1|	-	0.055	13.7	3.6	0.28	11.4	3.6	2.0	1	1	0	1	1	1	0	Predicted	membrane	protein	(DUF2127)
DUF996	PF06195.13	gi|408405836|ref|YP_006863819.1|	-	0.12	12.7	0.3	0.12	12.7	0.3	2.0	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF996)
Proteasome	PF00227.26	gi|408405837|ref|YP_006863820.1|	-	2e-48	164.4	0.7	2.3e-48	164.2	0.7	1.0	1	0	0	1	1	1	1	Proteasome	subunit
Proteasome	PF00227.26	gi|408405838|ref|YP_006863821.1|	-	1.7e-39	135.3	0.0	2e-39	135.0	0.0	1.1	1	0	0	1	1	1	1	Proteasome	subunit
HxlR	PF01638.17	gi|408405839|ref|YP_006863822.1|	-	2.1e-25	88.3	0.8	2.8e-25	88.0	0.8	1.1	1	0	0	1	1	1	1	HxlR-like	helix-turn-helix
HTH_34	PF13601.6	gi|408405839|ref|YP_006863822.1|	-	0.00085	19.5	0.1	0.0013	18.9	0.1	1.2	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
DUF1191	PF06697.12	gi|408405839|ref|YP_006863822.1|	-	0.0017	18.2	0.0	0.002	17.9	0.0	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1191)
PadR	PF03551.14	gi|408405839|ref|YP_006863822.1|	-	0.013	15.5	0.1	0.021	14.8	0.1	1.5	1	1	0	1	1	1	0	Transcriptional	regulator	PadR-like	family
MarR	PF01047.22	gi|408405839|ref|YP_006863822.1|	-	0.018	15.0	0.2	0.037	14.0	0.2	1.5	1	0	0	1	1	1	0	MarR	family
HTH_20	PF12840.7	gi|408405839|ref|YP_006863822.1|	-	0.052	13.6	0.1	0.097	12.8	0.1	1.5	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_24	PF13412.6	gi|408405839|ref|YP_006863822.1|	-	0.1	12.2	0.5	0.22	11.1	0.1	1.7	2	0	0	2	2	2	0	Winged	helix-turn-helix	DNA-binding
TFIIB	PF00382.19	gi|408405841|ref|YP_006863824.1|	-	6.7e-25	86.9	1.6	1.2e-12	47.7	0.3	2.2	2	0	0	2	2	2	2	Transcription	factor	TFIIB	repeat
TF_Zn_Ribbon	PF08271.12	gi|408405841|ref|YP_006863824.1|	-	1e-07	31.3	3.5	1.8e-07	30.6	3.5	1.4	1	0	0	1	1	1	1	TFIIB	zinc-binding
zf-RRN7	PF11781.8	gi|408405841|ref|YP_006863824.1|	-	0.00076	19.1	0.7	0.0013	18.4	0.7	1.3	1	0	0	1	1	1	1	Zinc-finger	of	RNA-polymerase	I-specific	TFIIB,	Rrn7
OrfB_Zn_ribbon	PF07282.11	gi|408405841|ref|YP_006863824.1|	-	0.01	15.7	0.4	0.022	14.7	0.4	1.5	1	0	0	1	1	1	0	Putative	transposase	DNA-binding	domain
zf-ribbon_3	PF13248.6	gi|408405841|ref|YP_006863824.1|	-	0.03	13.7	4.7	0.42	10.1	4.7	2.2	1	1	0	1	1	1	0	zinc-ribbon	domain
DUF2387	PF09526.10	gi|408405841|ref|YP_006863824.1|	-	0.12	12.6	0.3	0.32	11.2	0.3	1.7	1	0	0	1	1	1	0	Probable	metal-binding	protein	(DUF2387)
Zn_Tnp_IS1595	PF12760.7	gi|408405841|ref|YP_006863824.1|	-	0.12	12.3	0.1	0.23	11.4	0.1	1.4	1	0	0	1	1	1	0	Transposase	zinc-ribbon	domain
zinc_ribbon_2	PF13240.6	gi|408405841|ref|YP_006863824.1|	-	0.17	11.7	2.1	12	5.8	0.0	2.3	2	0	0	2	2	2	0	zinc-ribbon	domain
A2L_zn_ribbon	PF08792.10	gi|408405841|ref|YP_006863824.1|	-	0.71	9.7	3.2	5.3	6.9	3.2	2.1	1	1	1	2	2	2	0	A2L	zinc	ribbon	domain
DNA_RNApol_7kD	PF03604.13	gi|408405841|ref|YP_006863824.1|	-	5.5	6.8	6.7	12	5.7	3.8	2.7	2	1	1	3	3	3	0	DNA	directed	RNA	polymerase,	7	kDa	subunit
CDC48_N	PF02359.18	gi|408405843|ref|YP_006863826.1|	-	1.1e-05	25.5	0.0	4.1e-05	23.7	0.0	1.7	2	0	0	2	2	2	1	Cell	division	protein	48	(CDC48),	N-terminal	domain
Rho_RNA_bind	PF07497.12	gi|408405843|ref|YP_006863826.1|	-	0.022	14.6	0.2	0.09	12.7	0.2	1.9	1	1	0	1	1	1	0	Rho	termination	factor,	RNA-binding	domain
Inositol_P	PF00459.25	gi|408405844|ref|YP_006863827.1|	-	1.1e-25	90.6	0.0	1.3e-25	90.5	0.0	1.0	1	0	0	1	1	1	1	Inositol	monophosphatase	family
FBPase_glpX	PF03320.13	gi|408405844|ref|YP_006863827.1|	-	0.068	12.0	0.0	0.097	11.5	0.0	1.2	1	0	0	1	1	1	0	Bacterial	fructose-1,6-bisphosphatase,	glpX-encoded
SAP	PF02037.27	gi|408405844|ref|YP_006863827.1|	-	0.13	12.1	0.0	5.9	6.8	0.0	2.4	2	0	0	2	2	2	0	SAP	domain
Pro_dh	PF01619.18	gi|408405845|ref|YP_006863828.1|	-	1.2e-32	113.6	0.3	2.1e-32	112.9	0.3	1.2	1	0	0	1	1	1	1	Proline	dehydrogenase
Aldedh	PF00171.22	gi|408405846|ref|YP_006863829.1|	-	6.8e-151	502.9	0.0	8.5e-151	502.6	0.0	1.0	1	0	0	1	1	1	1	Aldehyde	dehydrogenase	family
Endonuc_Holl	PF10107.9	gi|408405846|ref|YP_006863829.1|	-	0.028	14.3	0.5	0.055	13.3	0.1	1.7	2	0	0	2	2	2	0	Endonuclease	related	to	archaeal	Holliday	junction	resolvase
LuxC	PF05893.14	gi|408405846|ref|YP_006863829.1|	-	0.06	12.4	0.1	0.37	9.8	0.1	2.2	1	1	0	1	1	1	0	Acyl-CoA	reductase	(LuxC)
DUF1218	PF06749.12	gi|408405847|ref|YP_006863830.1|	-	0.0039	17.7	1.0	0.004	17.6	1.0	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1218)
DUF3852	PF12963.7	gi|408405847|ref|YP_006863830.1|	-	0.0049	17.2	0.7	0.0057	17.0	0.7	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3852)
GRP	PF07172.11	gi|408405847|ref|YP_006863830.1|	-	0.02	15.6	0.0	0.021	15.5	0.0	1.1	1	0	0	1	1	1	0	Glycine	rich	protein	family
TGBp3	PF02495.17	gi|408405847|ref|YP_006863830.1|	-	0.049	13.3	6.9	0.25	11.0	6.9	1.9	1	1	0	1	1	1	0	Triple	gene	block	3
Sigma_reg_N	PF13800.6	gi|408405847|ref|YP_006863830.1|	-	0.13	12.6	1.7	0.16	12.3	1.7	1.1	1	0	0	1	1	1	0	Sigma	factor	regulator	N-terminal
Glutenin_hmw	PF03157.13	gi|408405847|ref|YP_006863830.1|	-	0.21	10.0	0.1	0.24	9.8	0.1	1.0	1	0	0	1	1	1	0	High	molecular	weight	glutenin	subunit
CarboxypepD_reg	PF13620.6	gi|408405848|ref|YP_006863831.1|	-	7.2e-46	154.4	21.6	7.7e-13	48.5	0.2	7.3	5	3	0	5	5	5	5	Carboxypeptidase	regulatory-like	domain
CarbopepD_reg_2	PF13715.6	gi|408405848|ref|YP_006863831.1|	-	8.7e-22	76.9	4.4	8.8e-06	25.6	0.0	7.7	7	1	0	7	7	7	5	CarboxypepD_reg-like	domain
Big_1	PF02369.16	gi|408405848|ref|YP_006863831.1|	-	8.1e-11	41.8	20.6	4e-05	23.5	0.4	7.4	8	1	1	9	9	9	3	Bacterial	Ig-like	domain	(group	1)
CooC_C	PF15976.5	gi|408405848|ref|YP_006863831.1|	-	9.6e-09	35.2	0.4	0.48	10.5	0.0	5.5	5	0	0	5	5	5	3	CS1-pili	formation	C-terminal
fn3_3	PF14686.6	gi|408405848|ref|YP_006863831.1|	-	4.1e-08	32.9	0.8	0.071	12.9	0.0	4.7	4	0	0	4	4	4	3	Polysaccharide	lyase	family	4,	domain	II
MetallophosN	PF16371.5	gi|408405848|ref|YP_006863831.1|	-	1.3e-07	31.7	0.9	0.068	13.4	0.0	5.0	4	0	0	4	4	4	2	N	terminal	of	Calcineurin-like	phosphoesterase
Dioxygenase_C	PF00775.21	gi|408405848|ref|YP_006863831.1|	-	2.5e-07	30.3	1.1	2.2	7.7	0.0	5.5	2	1	2	4	4	4	2	Dioxygenase
SpaA	PF17802.1	gi|408405848|ref|YP_006863831.1|	-	6.9e-05	23.1	0.7	1.2	9.6	0.1	4.0	4	0	0	4	4	4	2	Prealbumin-like	fold	domain
Mfa2	PF08842.10	gi|408405848|ref|YP_006863831.1|	-	0.0016	18.1	0.0	0.0055	16.3	0.0	1.8	1	1	0	2	2	2	1	Fimbrillin-A	associated	anchor	proteins	Mfa1	and	Mfa2
DUF4198	PF10670.9	gi|408405848|ref|YP_006863831.1|	-	0.0018	18.7	0.2	0.014	15.8	0.0	2.4	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF4198)
ZoocinA_TRD	PF16775.5	gi|408405848|ref|YP_006863831.1|	-	0.033	14.3	0.1	0.29	11.3	0.0	2.5	2	0	0	2	2	2	0	Target	recognition	domain	of	lytic	exoenzyme
SoxE	PF06525.11	gi|408405848|ref|YP_006863831.1|	-	0.041	13.4	1.4	0.13	11.8	0.4	2.4	2	0	0	2	2	2	0	Sulfocyanin	(SoxE)	domain
bMG3	PF11974.8	gi|408405848|ref|YP_006863831.1|	-	0.044	13.8	2.7	2.3	8.3	0.0	3.8	5	0	0	5	5	4	0	Bacterial	alpha-2-macroglobulin	MG3	domain
DUF824	PF05688.11	gi|408405848|ref|YP_006863831.1|	-	0.77	9.6	8.1	8	6.4	0.0	4.0	5	0	0	5	5	4	0	Salmonella	repeat	of	unknown	function	(DUF824)
Big_7	PF17957.1	gi|408405848|ref|YP_006863831.1|	-	2.8	8.8	16.4	3.4	8.5	0.4	5.4	6	2	0	6	6	5	0	Bacterial	Ig	domain
DUF87	PF01935.17	gi|408405849|ref|YP_006863832.1|	-	4.9e-13	49.7	0.1	4.9e-13	49.7	0.1	2.8	2	1	0	2	2	1	1	Helicase	HerA,	central	domain
DUF853	PF05872.12	gi|408405849|ref|YP_006863832.1|	-	1.4e-07	30.5	0.0	1.4e-07	30.5	0.0	2.9	3	0	0	3	3	3	1	Bacterial	protein	of	unknown	function	(DUF853)
FtsK_SpoIIIE	PF01580.18	gi|408405849|ref|YP_006863832.1|	-	3.8e-05	23.2	1.0	9.7e-05	21.8	0.0	1.9	2	0	0	2	2	2	1	FtsK/SpoIIIE	family
AAA_10	PF12846.7	gi|408405849|ref|YP_006863832.1|	-	0.00012	21.1	6.7	0.00023	20.2	0.0	3.1	3	1	1	4	4	4	1	AAA-like	domain
TrwB_AAD_bind	PF10412.9	gi|408405849|ref|YP_006863832.1|	-	0.0046	15.9	0.5	0.013	14.5	0.0	1.9	2	0	0	2	2	2	1	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
CREPT	PF16566.5	gi|408405849|ref|YP_006863832.1|	-	0.15	12.2	6.8	0.36	11.0	6.8	1.6	1	0	0	1	1	1	0	Cell-cycle	alteration	and	expression-elevated	protein	in	tumour
ResIII	PF04851.15	gi|408405849|ref|YP_006863832.1|	-	0.16	11.9	6.3	0.3	11.1	0.0	2.6	2	0	0	2	2	2	0	Type	III	restriction	enzyme,	res	subunit
ATG16	PF08614.11	gi|408405849|ref|YP_006863832.1|	-	0.19	11.9	15.1	0.96	9.6	14.9	2.0	1	1	0	1	1	1	0	Autophagy	protein	16	(ATG16)
DUF3376	PF11856.8	gi|408405849|ref|YP_006863832.1|	-	0.27	10.2	1.8	0.35	9.8	0.0	1.9	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3376)
ABC_tran	PF00005.27	gi|408405849|ref|YP_006863832.1|	-	0.39	11.2	0.0	0.39	11.2	0.0	2.5	2	1	0	2	2	1	0	ABC	transporter
Baculo_PEP_C	PF04513.12	gi|408405849|ref|YP_006863832.1|	-	0.63	10.1	2.3	9	6.3	0.1	2.4	2	0	0	2	2	2	0	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
Exonuc_VII_L	PF02601.15	gi|408405849|ref|YP_006863832.1|	-	0.89	9.1	10.7	1.4	8.4	10.7	1.2	1	0	0	1	1	1	0	Exonuclease	VII,	large	subunit
APG6_N	PF17675.1	gi|408405849|ref|YP_006863832.1|	-	2.9	8.4	18.5	0.14	12.7	11.2	2.4	1	1	0	2	2	2	0	Apg6	coiled-coil	region
Peptidase_S46	PF10459.9	gi|408405849|ref|YP_006863832.1|	-	3.4	6.2	7.2	5.4	5.5	7.2	1.2	1	0	0	1	1	1	0	Peptidase	S46
DUF1664	PF07889.12	gi|408405849|ref|YP_006863832.1|	-	5.3	7.1	12.0	1.4	8.9	4.1	2.4	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF1664)
Phage_GPO	PF05929.11	gi|408405849|ref|YP_006863832.1|	-	5.5	6.5	7.8	4.2	6.9	5.5	1.8	1	1	1	2	2	2	0	Phage	capsid	scaffolding	protein	(GPO)	serine	peptidase
NPV_P10	PF05531.12	gi|408405849|ref|YP_006863832.1|	-	7.7	7.1	7.5	62	4.2	5.7	2.6	2	1	1	3	3	2	0	Nucleopolyhedrovirus	P10	protein
Spectrin	PF00435.21	gi|408405850|ref|YP_006863833.1|	-	0.037	14.5	1.1	0.045	14.2	1.1	1.1	1	0	0	1	1	1	0	Spectrin	repeat
HLH	PF00010.26	gi|408405850|ref|YP_006863833.1|	-	0.067	13.2	0.1	0.097	12.6	0.1	1.2	1	0	0	1	1	1	0	Helix-loop-helix	DNA-binding	domain
RibD_C	PF01872.17	gi|408405851|ref|YP_006863834.1|	-	6.6e-52	176.3	2.1	7.3e-52	176.1	2.1	1.0	1	0	0	1	1	1	1	RibD	C-terminal	domain
PALP	PF00291.25	gi|408405851|ref|YP_006863834.1|	-	0.065	12.6	0.0	0.091	12.1	0.0	1.4	1	1	0	1	1	1	0	Pyridoxal-phosphate	dependent	enzyme
Amidohydro_1	PF01979.20	gi|408405852|ref|YP_006863835.1|	-	9.9e-45	153.3	0.7	1.2e-44	153.1	0.7	1.0	1	0	0	1	1	1	1	Amidohydrolase	family
Amidohydro_3	PF07969.11	gi|408405852|ref|YP_006863835.1|	-	3.8e-16	59.6	1.0	3.5e-10	40.0	0.1	2.2	2	0	0	2	2	2	2	Amidohydrolase	family
GCH_III	PF05165.12	gi|408405853|ref|YP_006863836.1|	-	5e-60	202.8	0.7	6e-60	202.6	0.7	1.0	1	0	0	1	1	1	1	GTP	cyclohydrolase	III
mCpol	PF18182.1	gi|408405853|ref|YP_006863836.1|	-	0.00016	22.0	0.5	0.47	10.8	0.1	2.2	2	0	0	2	2	2	2	minimal	CRISPR	polymerase	domain
Guanylate_cyc	PF00211.20	gi|408405853|ref|YP_006863836.1|	-	0.0007	19.3	0.1	0.0017	18.0	0.1	1.6	1	0	0	1	1	1	1	Adenylate	and	Guanylate	cyclase	catalytic	domain
GGDEF_2	PF17853.1	gi|408405853|ref|YP_006863836.1|	-	0.0012	19.1	0.0	0.45	10.8	0.0	2.2	2	0	0	2	2	2	2	GGDEF-like	domain
GGDEF	PF00990.21	gi|408405853|ref|YP_006863836.1|	-	0.024	14.4	0.1	0.05	13.3	0.1	1.7	1	1	0	1	1	1	0	Diguanylate	cyclase,	GGDEF	domain
DMRL_synthase	PF00885.19	gi|408405854|ref|YP_006863837.1|	-	2e-33	115.2	0.1	2.4e-33	114.9	0.1	1.1	1	0	0	1	1	1	1	6,7-dimethyl-8-ribityllumazine	synthase
Metallophos_3	PF14582.6	gi|408405854|ref|YP_006863837.1|	-	0.071	12.4	0.6	0.43	9.9	0.3	2.2	1	1	1	2	2	2	0	Metallophosphoesterase,	calcineurin	superfamily
DHBP_synthase	PF00926.19	gi|408405855|ref|YP_006863838.1|	-	8.7e-58	195.0	0.3	9.9e-58	194.8	0.3	1.0	1	0	0	1	1	1	1	3,4-dihydroxy-2-butanone	4-phosphate	synthase
Lum_binding	PF00677.17	gi|408405857|ref|YP_006863840.1|	-	2.1e-45	152.6	1.5	4e-22	78.0	0.1	2.1	2	0	0	2	2	2	2	Lumazine	binding	domain
YabP	PF07873.11	gi|408405857|ref|YP_006863840.1|	-	0.022	14.5	0.0	3.4	7.5	0.0	2.6	2	0	0	2	2	2	0	YabP	family
Hist_deacetyl	PF00850.19	gi|408405858|ref|YP_006863841.1|	-	1.2e-68	231.9	0.0	1.4e-68	231.6	0.0	1.1	1	0	0	1	1	1	1	Histone	deacetylase	domain
MFS_1	PF07690.16	gi|408405859|ref|YP_006863842.1|	-	2.2e-22	79.5	45.5	3.9e-16	58.9	33.0	2.0	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
PrgI	PF12666.7	gi|408405859|ref|YP_006863842.1|	-	0.098	13.4	0.1	0.098	13.4	0.1	4.9	4	1	1	5	5	5	0	PrgI	family	protein
Hydrolase_4	PF12146.8	gi|408405861|ref|YP_006863844.1|	-	1.6e-12	47.2	0.0	1.2e-07	31.3	0.0	2.4	2	0	0	2	2	2	2	Serine	aminopeptidase,	S33
Abhydrolase_1	PF00561.20	gi|408405861|ref|YP_006863844.1|	-	3.2e-09	36.8	0.0	5.4e-09	36.1	0.0	1.3	1	0	0	1	1	1	1	alpha/beta	hydrolase	fold
PhaC_N	PF07167.13	gi|408405861|ref|YP_006863844.1|	-	1.9e-05	24.4	0.1	3.7e-05	23.5	0.1	1.4	1	0	0	1	1	1	1	Poly-beta-hydroxybutyrate	polymerase	(PhaC)	N-terminus
FSH1	PF03959.13	gi|408405861|ref|YP_006863844.1|	-	0.00022	21.0	0.0	0.25	11.0	0.0	2.4	2	0	0	2	2	2	2	Serine	hydrolase	(FSH1)
Abhydrolase_6	PF12697.7	gi|408405861|ref|YP_006863844.1|	-	0.004	17.8	0.0	0.0061	17.2	0.0	1.3	1	0	0	1	1	1	1	Alpha/beta	hydrolase	family
PHB_depo_C	PF06850.11	gi|408405861|ref|YP_006863844.1|	-	0.0049	16.4	0.0	0.0078	15.7	0.0	1.3	1	0	0	1	1	1	1	PHB	de-polymerase	C-terminus
Peptidase_S76	PF13611.6	gi|408405861|ref|YP_006863844.1|	-	0.085	13.2	0.0	0.19	12.1	0.0	1.5	1	0	0	1	1	1	0	Serine	peptidase	of	plant	viral	polyprotein,	P1
zf-C2H2_4	PF13894.6	gi|408405862|ref|YP_006863845.1|	-	0.00072	20.2	0.6	0.0012	19.5	0.6	1.4	1	0	0	1	1	1	1	C2H2-type	zinc	finger
zf-C2H2_6	PF13912.6	gi|408405862|ref|YP_006863845.1|	-	0.0028	17.6	0.0	0.0039	17.2	0.0	1.3	1	0	0	1	1	1	1	C2H2-type	zinc	finger
Rad50_zn_hook	PF04423.14	gi|408405862|ref|YP_006863845.1|	-	0.013	15.4	0.1	0.015	15.1	0.1	1.1	1	0	0	1	1	1	0	Rad50	zinc	hook	motif
Zn-C2H2_12	PF18112.1	gi|408405862|ref|YP_006863845.1|	-	0.014	15.9	0.2	0.021	15.3	0.2	1.4	1	0	0	1	1	1	0	Autophagy	receptor	zinc	finger-C2H2	domain
zf-C2H2	PF00096.26	gi|408405862|ref|YP_006863845.1|	-	0.016	15.6	1.1	0.025	15.0	1.1	1.3	1	0	0	1	1	1	0	Zinc	finger,	C2H2	type
Prok-RING_4	PF14447.6	gi|408405862|ref|YP_006863845.1|	-	0.017	15.0	0.0	0.021	14.6	0.0	1.2	1	0	0	1	1	1	0	Prokaryotic	RING	finger	family	4
DUF5318	PF17249.2	gi|408405862|ref|YP_006863845.1|	-	0.03	14.1	0.0	0.031	14.0	0.0	1.1	1	0	0	1	1	1	0	Family	of	unknown	function	(DUF5318)
Ribosomal_L36e	PF01158.18	gi|408405862|ref|YP_006863845.1|	-	0.052	13.8	0.0	0.057	13.7	0.0	1.0	1	0	0	1	1	1	0	Ribosomal	protein	L36e
zf-C2HC_2	PF13913.6	gi|408405862|ref|YP_006863845.1|	-	0.052	13.5	1.9	0.095	12.6	1.9	1.5	1	0	0	1	1	1	0	zinc-finger	of	a	C2HC-type
zf-C2H2_9	PF16293.5	gi|408405862|ref|YP_006863845.1|	-	0.099	12.5	0.0	0.12	12.2	0.0	1.2	1	0	0	1	1	1	0	C2H2	type	zinc-finger	(1	copy)
UBZ_FAAP20	PF15750.5	gi|408405862|ref|YP_006863845.1|	-	0.15	12.0	0.1	0.36	10.8	0.0	1.6	2	0	0	2	2	2	0	Ubiquitin-binding	zinc-finger
Glycos_transf_2	PF00535.26	gi|408405863|ref|YP_006863846.1|	-	1e-22	80.7	0.1	1.6e-22	80.1	0.1	1.4	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_tranf_2_3	PF13641.6	gi|408405863|ref|YP_006863846.1|	-	2.2e-21	76.8	0.0	3e-21	76.4	0.0	1.2	1	0	0	1	1	1	1	Glycosyltransferase	like	family	2
Glyco_trans_2_3	PF13632.6	gi|408405863|ref|YP_006863846.1|	-	6.2e-08	32.8	0.0	9.1e-08	32.2	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	transferase	family	group	2
Glyco_tranf_2_4	PF13704.6	gi|408405863|ref|YP_006863846.1|	-	4.6e-05	23.8	0.1	8.5e-05	23.0	0.1	1.5	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_transf_21	PF13506.6	gi|408405863|ref|YP_006863846.1|	-	0.017	14.6	0.1	0.12	11.8	0.0	2.3	2	1	0	2	2	2	0	Glycosyl	transferase	family	21
RRM_4	PF10598.9	gi|408405863|ref|YP_006863846.1|	-	0.027	14.8	0.1	2.7	8.4	0.1	2.9	2	1	2	4	4	4	0	RNA	recognition	motif	of	the	spliceosomal	PrP8
Anp1	PF03452.14	gi|408405863|ref|YP_006863846.1|	-	0.067	12.6	0.2	9.5	5.5	0.0	2.2	1	1	1	2	2	2	0	Anp1
HATPase_c	PF02518.26	gi|408405864|ref|YP_006863847.1|	-	3e-27	95.3	0.2	6.3e-27	94.3	0.2	1.6	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
dCache_1	PF02743.18	gi|408405864|ref|YP_006863847.1|	-	1.3e-18	67.7	5.6	1.5e-18	67.5	3.6	2.0	1	1	1	2	2	2	1	Cache	domain
HisKA	PF00512.25	gi|408405864|ref|YP_006863847.1|	-	1.9e-10	40.6	0.3	1.9e-10	40.6	0.3	3.5	4	0	0	4	4	4	1	His	Kinase	A	(phospho-acceptor)	domain
HATPase_c_2	PF13581.6	gi|408405864|ref|YP_006863847.1|	-	6.3e-06	26.2	0.0	1.5e-05	25.0	0.0	1.6	1	0	0	1	1	1	1	Histidine	kinase-like	ATPase	domain
HATPase_c_5	PF14501.6	gi|408405864|ref|YP_006863847.1|	-	0.00073	19.4	0.1	0.0033	17.3	0.0	2.2	2	0	0	2	2	2	1	GHKL	domain
HATPase_c_3	PF13589.6	gi|408405864|ref|YP_006863847.1|	-	0.007	16.2	0.0	0.014	15.2	0.0	1.5	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
Oleosin	PF01277.17	gi|408405864|ref|YP_006863847.1|	-	0.0075	16.0	0.1	0.076	12.8	0.0	2.2	2	0	0	2	2	2	1	Oleosin
LPG_synthase_TM	PF03706.13	gi|408405864|ref|YP_006863847.1|	-	0.0098	15.4	0.1	0.55	9.7	0.0	2.1	2	0	0	2	2	2	1	Lysylphosphatidylglycerol	synthase	TM	region
MctB	PF11382.8	gi|408405864|ref|YP_006863847.1|	-	0.01	15.6	1.3	0.03	14.0	1.3	1.7	1	0	0	1	1	1	1	Copper	transport	outer	membrane	protein,	MctB
sCache_2	PF17200.4	gi|408405864|ref|YP_006863847.1|	-	0.012	15.5	1.0	2	8.3	0.0	3.0	2	1	1	3	3	3	0	Single	Cache	domain	2
Csm1_N	PF18504.1	gi|408405864|ref|YP_006863847.1|	-	0.019	15.3	1.0	0.068	13.5	1.0	2.0	1	0	0	1	1	1	0	Csm1	N-terminal	domain
DUF4307	PF14155.6	gi|408405864|ref|YP_006863847.1|	-	0.035	13.9	0.3	0.32	10.8	0.1	2.3	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4307)
Cache_3-Cache_2	PF17201.4	gi|408405864|ref|YP_006863847.1|	-	0.043	13.1	7.8	0.076	12.3	0.4	3.0	3	0	0	3	3	3	0	Cache	3/Cache	2	fusion	domain
DUF267	PF03268.14	gi|408405864|ref|YP_006863847.1|	-	0.049	12.5	0.5	0.077	11.9	0.5	1.2	1	0	0	1	1	1	0	Caenorhabditis	protein	of	unknown	function,	DUF267
sCache_3_2	PF17203.4	gi|408405864|ref|YP_006863847.1|	-	0.065	13.4	2.9	0.25	11.5	0.6	2.7	1	1	1	2	2	2	0	Single	cache	domain	3
Trp_ring	PF18669.1	gi|408405864|ref|YP_006863847.1|	-	0.11	12.7	0.7	0.32	11.2	0.7	1.8	1	0	0	1	1	1	0	Trimeric	autotransporter	adhesin	Trp	ring	domain
DUF4381	PF14316.6	gi|408405864|ref|YP_006863847.1|	-	0.48	10.7	3.0	3.9	7.7	0.7	2.5	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4381)
KELK	PF15796.5	gi|408405864|ref|YP_006863847.1|	-	0.66	10.5	7.1	0.19	12.2	3.0	2.2	3	0	0	3	3	1	0	KELK-motif	containing	domain	of	MRCK	Ser/Thr	protein	kinase
DUF2681	PF10883.8	gi|408405864|ref|YP_006863847.1|	-	3.3	8.2	7.3	1.2	9.6	2.3	2.4	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2681)
Aldo_ket_red	PF00248.21	gi|408405865|ref|YP_006863848.1|	-	0.17	11.0	0.0	0.24	10.6	0.0	1.2	1	0	0	1	1	1	0	Aldo/keto	reductase	family
DnaJ	PF00226.31	gi|408405866|ref|YP_006863849.1|	-	7.4e-23	80.5	1.6	7.4e-23	80.5	1.6	1.6	2	0	0	2	2	2	1	DnaJ	domain
DZR	PF12773.7	gi|408405866|ref|YP_006863849.1|	-	0.00011	22.1	8.0	0.00017	21.5	8.0	1.3	1	0	0	1	1	1	1	Double	zinc	ribbon
Zn_ribbon_recom	PF13408.6	gi|408405866|ref|YP_006863849.1|	-	0.0046	17.5	0.6	3.2	8.4	0.0	2.6	2	0	0	2	2	2	1	Recombinase	zinc	beta	ribbon	domain
Glyco_transf_29	PF00777.18	gi|408405866|ref|YP_006863849.1|	-	0.023	14.1	1.8	0.037	13.4	0.2	1.8	1	1	1	2	2	2	0	Glycosyltransferase	family	29	(sialyltransferase)
TF_Zn_Ribbon	PF08271.12	gi|408405866|ref|YP_006863849.1|	-	0.06	12.9	11.7	0.25	10.9	2.4	2.8	2	1	0	2	2	2	0	TFIIB	zinc-binding
zinc_ribbon_4	PF13717.6	gi|408405866|ref|YP_006863849.1|	-	0.066	13.2	9.6	6.6	6.8	0.9	4.0	4	0	0	4	4	4	0	zinc-ribbon	domain
zinc_ribbon_15	PF17032.5	gi|408405866|ref|YP_006863849.1|	-	0.11	13.3	9.4	0.31	11.8	9.3	1.7	1	1	1	2	2	2	0	zinc-ribbon	family
zf-ISL3	PF14690.6	gi|408405866|ref|YP_006863849.1|	-	0.17	12.6	4.7	4.3	8.1	1.7	2.6	2	0	0	2	2	2	0	zinc-finger	of	transposase	IS204/IS1001/IS1096/IS1165
zf_UBZ	PF18439.1	gi|408405866|ref|YP_006863849.1|	-	0.63	9.7	7.6	1.7	8.3	0.0	3.8	4	0	0	4	4	4	0	Ubiquitin-Binding	Zinc	Finger
OrfB_Zn_ribbon	PF07282.11	gi|408405866|ref|YP_006863849.1|	-	0.87	9.6	6.0	8.7	6.3	1.0	2.6	2	0	0	2	2	2	0	Putative	transposase	DNA-binding	domain
PADR1	PF08063.12	gi|408405866|ref|YP_006863849.1|	-	1	9.2	8.3	2.1	8.2	0.9	2.3	2	0	0	2	2	2	0	PADR1	(NUC008)	domain
CpXC	PF14353.6	gi|408405866|ref|YP_006863849.1|	-	1.6	8.8	5.2	0.98	9.5	2.6	2.1	2	0	0	2	2	2	0	CpXC	protein
zf-UBP	PF02148.19	gi|408405866|ref|YP_006863849.1|	-	1.8	9.0	8.3	0.32	11.3	0.7	2.2	2	0	0	2	2	2	0	Zn-finger	in	ubiquitin-hydrolases	and	other	protein
zf-C2H2_6	PF13912.6	gi|408405866|ref|YP_006863849.1|	-	1.8	8.6	8.6	0.75	9.9	0.5	3.1	3	0	0	3	3	3	0	C2H2-type	zinc	finger
zf-ribbon_3	PF13248.6	gi|408405866|ref|YP_006863849.1|	-	2.9	7.4	16.7	9.4	5.8	0.2	3.5	2	2	2	4	4	4	0	zinc-ribbon	domain
PhnA_Zn_Ribbon	PF08274.12	gi|408405866|ref|YP_006863849.1|	-	3.2	7.8	9.8	11	6.1	2.0	3.0	2	1	0	2	2	2	0	PhnA	Zinc-Ribbon
TackOD1	PF18551.1	gi|408405866|ref|YP_006863849.1|	-	3.5	7.3	10.0	2.4	7.8	1.3	2.8	2	1	1	3	3	3	0	Thaumarchaeal	output	domain	1
Zn-ribbon_8	PF09723.10	gi|408405866|ref|YP_006863849.1|	-	4.4	7.5	12.7	0.22	11.6	3.6	3.1	2	1	1	3	3	2	0	Zinc	ribbon	domain
Rubredoxin_2	PF18073.1	gi|408405866|ref|YP_006863849.1|	-	9.5	6.0	18.8	5.3	6.9	0.5	4.0	3	1	0	4	4	4	0	Rubredoxin	metal	binding	domain
Abhydrolase_1	PF00561.20	gi|408405867|ref|YP_006863850.1|	-	5.6e-28	98.3	0.3	4.8e-18	65.7	0.1	2.1	1	1	0	2	2	2	2	alpha/beta	hydrolase	fold
Abhydrolase_6	PF12697.7	gi|408405867|ref|YP_006863850.1|	-	3.6e-25	89.9	0.2	4.4e-25	89.6	0.2	1.1	1	0	0	1	1	1	1	Alpha/beta	hydrolase	family
Hydrolase_4	PF12146.8	gi|408405867|ref|YP_006863850.1|	-	4.3e-20	72.0	0.1	7.5e-19	67.9	0.1	2.0	1	1	0	1	1	1	1	Serine	aminopeptidase,	S33
DUF676	PF05057.14	gi|408405867|ref|YP_006863850.1|	-	4.3e-07	29.7	0.0	6.5e-07	29.1	0.0	1.2	1	0	0	1	1	1	1	Putative	serine	esterase	(DUF676)
Thioesterase	PF00975.20	gi|408405867|ref|YP_006863850.1|	-	3.3e-05	24.1	0.0	4.5e-05	23.7	0.0	1.2	1	0	0	1	1	1	1	Thioesterase	domain
UPF0227	PF05728.12	gi|408405867|ref|YP_006863850.1|	-	0.00049	20.1	0.0	0.0013	18.8	0.0	1.9	1	1	0	1	1	1	1	Uncharacterised	protein	family	(UPF0227)
FSH1	PF03959.13	gi|408405867|ref|YP_006863850.1|	-	0.0008	19.1	0.0	0.026	14.2	0.0	2.7	2	1	0	2	2	2	1	Serine	hydrolase	(FSH1)
Abhydrolase_5	PF12695.7	gi|408405867|ref|YP_006863850.1|	-	0.00082	19.2	0.0	0.16	11.7	0.0	2.2	2	0	0	2	2	2	1	Alpha/beta	hydrolase	family
Abhydrolase_2	PF02230.16	gi|408405867|ref|YP_006863850.1|	-	0.00097	19.0	0.1	0.099	12.4	0.0	3.1	3	1	1	4	4	4	1	Phospholipase/Carboxylesterase
LIDHydrolase	PF10230.9	gi|408405867|ref|YP_006863850.1|	-	0.001	18.7	0.0	0.0015	18.1	0.0	1.3	1	0	0	1	1	1	1	Lipid-droplet	associated	hydrolase
Abhydrolase_4	PF08386.10	gi|408405867|ref|YP_006863850.1|	-	0.0022	18.1	0.0	0.0046	17.0	0.0	1.5	1	0	0	1	1	1	1	TAP-like	protein
PGAP1	PF07819.13	gi|408405867|ref|YP_006863850.1|	-	0.0025	17.5	0.0	0.066	12.9	0.0	2.2	1	1	0	2	2	2	1	PGAP1-like	protein
Ser_hydrolase	PF06821.13	gi|408405867|ref|YP_006863850.1|	-	0.0089	15.9	0.0	1.1	9.1	0.0	2.3	2	0	0	2	2	2	1	Serine	hydrolase
BAAT_C	PF08840.11	gi|408405867|ref|YP_006863850.1|	-	0.012	15.5	0.0	0.022	14.7	0.0	1.4	1	1	0	1	1	1	0	BAAT	/	Acyl-CoA	thioester	hydrolase	C	terminal
Ndr	PF03096.14	gi|408405867|ref|YP_006863850.1|	-	0.02	13.6	0.0	1.1	7.9	0.0	2.8	1	1	2	3	3	3	0	Ndr	family
Abhydro_lipase	PF04083.16	gi|408405867|ref|YP_006863850.1|	-	0.027	14.0	0.0	0.063	12.9	0.0	1.5	1	0	0	1	1	1	0	Partial	alpha/beta-hydrolase	lipase	region
DUF1057	PF06342.12	gi|408405867|ref|YP_006863850.1|	-	0.083	11.9	0.0	0.13	11.3	0.0	1.4	1	1	0	1	1	1	0	Alpha/beta	hydrolase	of	unknown	function	(DUF1057)
Peptidase_S9	PF00326.21	gi|408405867|ref|YP_006863850.1|	-	0.17	11.3	0.0	3.3	7.1	0.0	2.3	2	0	0	2	2	2	0	Prolyl	oligopeptidase	family
DUF2920	PF11144.8	gi|408405867|ref|YP_006863850.1|	-	0.21	10.7	0.0	0.39	9.8	0.0	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2920)
SHMT	PF00464.19	gi|408405868|ref|YP_006863851.1|	-	1.9e-74	250.7	0.1	2.8e-74	250.1	0.1	1.2	1	0	0	1	1	1	1	Serine	hydroxymethyltransferase
Beta_elim_lyase	PF01212.21	gi|408405868|ref|YP_006863851.1|	-	3.2e-08	33.2	0.3	4.8e-08	32.6	0.3	1.3	1	0	0	1	1	1	1	Beta-eliminating	lyase
Aminotran_5	PF00266.19	gi|408405868|ref|YP_006863851.1|	-	8.8e-08	31.5	0.3	1.4e-06	27.5	0.3	2.3	1	1	0	1	1	1	1	Aminotransferase	class-V
Aminotran_1_2	PF00155.21	gi|408405868|ref|YP_006863851.1|	-	3.8e-06	26.3	0.0	1.1e-05	24.9	0.0	1.6	1	1	0	1	1	1	1	Aminotransferase	class	I	and	II
SelA	PF03841.13	gi|408405868|ref|YP_006863851.1|	-	0.00084	18.4	0.0	0.0012	17.9	0.0	1.3	1	0	0	1	1	1	1	L-seryl-tRNA	selenium	transferase
Melibiase_2	PF16499.5	gi|408405868|ref|YP_006863851.1|	-	0.19	10.9	0.0	22	4.1	0.0	3.0	3	0	0	3	3	3	0	Alpha	galactosidase	A
Peptidase_M32	PF02074.15	gi|408405869|ref|YP_006863852.1|	-	2.1e-165	551.2	1.2	2.3e-165	551.1	1.2	1.0	1	0	0	1	1	1	1	Carboxypeptidase	Taq	(M32)	metallopeptidase
TrmB	PF01978.19	gi|408405869|ref|YP_006863852.1|	-	0.0013	18.6	0.0	0.0063	16.4	0.0	2.1	2	0	0	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
PAS_8	PF13188.7	gi|408405869|ref|YP_006863852.1|	-	0.045	13.8	0.0	1.1	9.4	0.0	2.7	2	0	0	2	2	2	0	PAS	domain
GP17	PF17420.2	gi|408405869|ref|YP_006863852.1|	-	1.3	9.2	4.0	0.83	9.9	0.1	2.7	4	0	0	4	4	4	0	Superinfection	exclusion	gene	product	17
HTH_Crp_2	PF13545.6	gi|408405871|ref|YP_006863854.1|	-	3.6e-05	23.7	0.0	7.4e-05	22.6	0.0	1.5	1	0	0	1	1	1	1	Crp-like	helix-turn-helix	domain
MarR	PF01047.22	gi|408405871|ref|YP_006863854.1|	-	0.001	18.9	0.2	0.0021	17.9	0.0	1.6	2	0	0	2	2	2	1	MarR	family
HTH_36	PF13730.6	gi|408405871|ref|YP_006863854.1|	-	0.013	15.4	0.0	0.031	14.2	0.0	1.6	1	0	0	1	1	1	0	Helix-turn-helix	domain
DUF4423	PF14394.6	gi|408405871|ref|YP_006863854.1|	-	0.026	14.2	0.9	0.12	12.1	0.0	2.0	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4423)
HTH_20	PF12840.7	gi|408405871|ref|YP_006863854.1|	-	0.042	13.9	0.0	0.075	13.1	0.0	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain
TrmB	PF01978.19	gi|408405871|ref|YP_006863854.1|	-	0.08	12.8	0.0	0.15	12.0	0.0	1.5	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
MarR_2	PF12802.7	gi|408405871|ref|YP_006863854.1|	-	0.095	12.6	0.0	0.2	11.6	0.0	1.5	1	0	0	1	1	1	0	MarR	family
RPA_C	PF08784.11	gi|408405871|ref|YP_006863854.1|	-	0.13	12.9	0.6	0.41	11.3	0.0	1.9	2	0	0	2	2	2	0	Replication	protein	A	C	terminal
HTH_11	PF08279.12	gi|408405871|ref|YP_006863854.1|	-	0.17	11.8	1.1	0.25	11.3	0.1	1.8	2	0	0	2	2	2	0	HTH	domain
Trypsin_2	PF13365.6	gi|408405872|ref|YP_006863855.1|	-	1.4e-29	104.0	0.0	2.1e-29	103.4	0.0	1.3	1	0	0	1	1	1	1	Trypsin-like	peptidase	domain
PDZ_2	PF13180.6	gi|408405872|ref|YP_006863855.1|	-	1.1e-16	60.9	0.1	2.5e-16	59.8	0.1	1.6	1	0	0	1	1	1	1	PDZ	domain
PDZ_6	PF17820.1	gi|408405872|ref|YP_006863855.1|	-	1.1e-13	50.8	0.9	4.1e-13	49.0	0.2	2.4	3	0	0	3	3	3	1	PDZ	domain
Trypsin	PF00089.26	gi|408405872|ref|YP_006863855.1|	-	3.7e-10	40.0	0.1	6.1e-10	39.3	0.1	1.3	1	0	0	1	1	1	1	Trypsin
PDZ	PF00595.24	gi|408405872|ref|YP_006863855.1|	-	1.7e-07	31.5	1.1	2.5e-07	30.9	0.2	1.8	2	0	0	2	2	2	1	PDZ	domain
Tricorn_PDZ	PF14685.6	gi|408405872|ref|YP_006863855.1|	-	0.00043	20.2	0.2	0.0015	18.5	0.2	2.0	1	1	0	1	1	1	1	Tricorn	protease	PDZ	domain
GRASP55_65	PF04495.14	gi|408405872|ref|YP_006863855.1|	-	0.00099	19.4	0.0	0.0025	18.1	0.0	1.6	1	0	0	1	1	1	1	GRASP55/65	PDZ-like	domain
MazE_antitoxin	PF04014.18	gi|408405872|ref|YP_006863855.1|	-	0.031	14.2	0.0	0.13	12.3	0.0	2.1	2	0	0	2	2	2	0	Antidote-toxin	recognition	MazE,	bacterial	antitoxin
Peptidase_S46	PF10459.9	gi|408405872|ref|YP_006863855.1|	-	0.049	12.3	0.6	5	5.7	0.1	2.1	2	0	0	2	2	2	0	Peptidase	S46
HemolysinCabind	PF00353.19	gi|408405873|ref|YP_006863856.1|	-	1.2e-20	73.0	62.3	1.5e-08	34.5	14.1	8.0	5	2	3	8	8	8	7	RTX	calcium-binding	nonapeptide	repeat	(4	copies)
AFP_2	PF18815.1	gi|408405873|ref|YP_006863856.1|	-	0.039	14.2	15.8	0.04	14.2	0.5	4.8	4	2	1	5	5	5	0	Bacterial	antifreeze	protein	repeat
Asparaginase_2	PF01112.18	gi|408405874|ref|YP_006863857.1|	-	4.8e-33	114.5	0.4	5.5e-33	114.3	0.4	1.0	1	0	0	1	1	1	1	Asparaginase
FIVAR	PF07554.13	gi|408405874|ref|YP_006863857.1|	-	0.031	15.0	0.2	0.052	14.3	0.2	1.3	1	0	0	1	1	1	0	FIVAR	domain
MFS_1	PF07690.16	gi|408405875|ref|YP_006863858.1|	-	8.7e-11	41.3	15.4	1.3e-10	40.7	2.7	2.1	2	0	0	2	2	2	2	Major	Facilitator	Superfamily
MFS_1_like	PF12832.7	gi|408405875|ref|YP_006863858.1|	-	8.5e-08	31.4	0.1	2.9e-05	23.1	0.0	1.8	1	1	1	2	2	2	2	MFS_1	like	family
OATP	PF03137.20	gi|408405875|ref|YP_006863858.1|	-	0.0047	15.3	0.6	0.014	13.7	0.0	1.9	1	1	1	2	2	2	1	Organic	Anion	Transporter	Polypeptide	(OATP)	family
PMT	PF02366.18	gi|408405875|ref|YP_006863858.1|	-	0.064	12.8	9.0	2.1	7.8	4.4	2.1	2	0	0	2	2	2	0	Dolichyl-phosphate-mannose-protein	mannosyltransferase
MFS_1	PF07690.16	gi|408405876|ref|YP_006863859.1|	-	3.9e-16	58.9	20.3	4.6e-16	58.7	20.3	1.0	1	0	0	1	1	1	1	Major	Facilitator	Superfamily
Sugar_tr	PF00083.24	gi|408405876|ref|YP_006863859.1|	-	7e-05	21.9	7.8	8e-05	21.7	7.8	1.1	1	0	0	1	1	1	1	Sugar	(and	other)	transporter
DUF2243	PF10002.9	gi|408405876|ref|YP_006863859.1|	-	0.017	15.3	1.2	0.03	14.4	0.1	1.8	2	0	0	2	2	2	0	Predicted	membrane	protein	(DUF2243)
Sulfotransfer_3	PF13469.6	gi|408405877|ref|YP_006863860.1|	-	6.2e-30	105.2	0.0	1.1e-29	104.3	0.0	1.4	1	1	0	1	1	1	1	Sulfotransferase	family
Sulfotransfer_1	PF00685.27	gi|408405877|ref|YP_006863860.1|	-	3.6e-14	52.9	0.1	9.4e-14	51.5	0.1	1.7	1	1	0	1	1	1	1	Sulfotransferase	domain
Metallophos_2	PF12850.7	gi|408405878|ref|YP_006863861.1|	-	2e-31	109.4	0.1	2.3e-31	109.2	0.1	1.0	1	0	0	1	1	1	1	Calcineurin-like	phosphoesterase	superfamily	domain
Metallophos	PF00149.28	gi|408405878|ref|YP_006863861.1|	-	1.3e-07	32.3	3.2	1.8e-05	25.4	0.4	2.3	1	1	1	2	2	2	2	Calcineurin-like	phosphoesterase
Metallophos_3	PF14582.6	gi|408405878|ref|YP_006863861.1|	-	5.2e-06	26.0	0.2	0.039	13.3	0.0	2.1	2	0	0	2	2	2	2	Metallophosphoesterase,	calcineurin	superfamily
Transposase_22	PF02994.14	gi|408405878|ref|YP_006863861.1|	-	0.088	13.0	0.0	0.13	12.4	0.0	1.4	1	0	0	1	1	1	0	L1	transposable	element	RBD-like	domain
Diphthamide_syn	PF01866.17	gi|408405878|ref|YP_006863861.1|	-	0.15	11.4	0.0	0.18	11.2	0.0	1.1	1	0	0	1	1	1	0	Putative	diphthamide	synthesis	protein
TrmB	PF01978.19	gi|408405881|ref|YP_006863864.1|	-	0.032	14.1	0.0	0.085	12.8	0.0	1.7	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
TFIIE_alpha	PF02002.17	gi|408405881|ref|YP_006863864.1|	-	0.068	13.0	0.4	1.3	9.0	0.1	2.5	2	0	0	2	2	2	0	TFIIE	alpha	subunit
PLDc_2	PF13091.6	gi|408405881|ref|YP_006863864.1|	-	0.071	13.0	0.8	0.12	12.3	0.1	1.9	2	1	0	2	2	2	0	PLD-like	domain
DUF771	PF05595.11	gi|408405881|ref|YP_006863864.1|	-	0.099	12.6	0.2	0.44	10.5	0.0	2.1	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF771)
DUF3263	PF11662.8	gi|408405881|ref|YP_006863864.1|	-	0.12	12.2	0.0	0.34	10.8	0.0	1.8	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3263)
HTH_24	PF13412.6	gi|408405881|ref|YP_006863864.1|	-	0.18	11.4	1.6	1.2	8.8	0.0	2.7	3	0	0	3	3	3	0	Winged	helix-turn-helix	DNA-binding
Sugar_tr	PF00083.24	gi|408405882|ref|YP_006863865.1|	-	3.2e-45	154.8	23.9	4e-45	154.5	23.9	1.1	1	0	0	1	1	1	1	Sugar	(and	other)	transporter
MFS_1	PF07690.16	gi|408405882|ref|YP_006863865.1|	-	9.4e-35	120.2	47.6	2.5e-32	112.2	23.9	2.0	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
MFS_4	PF06779.14	gi|408405882|ref|YP_006863865.1|	-	4.6e-06	26.2	14.8	4.8e-06	26.1	6.0	2.3	2	0	0	2	2	2	2	Uncharacterised	MFS-type	transporter	YbfB
DUF3290	PF11694.8	gi|408405882|ref|YP_006863865.1|	-	0.17	11.9	1.2	0.49	10.4	1.2	1.7	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3290)
PKD_channel	PF08016.12	gi|408405882|ref|YP_006863865.1|	-	0.33	9.6	4.3	0.13	10.9	1.6	1.6	1	1	0	1	1	1	0	Polycystin	cation	channel
Glyoxalase	PF00903.25	gi|408405883|ref|YP_006863866.1|	-	0.0073	16.5	0.0	0.0073	16.5	0.0	1.1	1	0	0	1	1	1	1	Glyoxalase/Bleomycin	resistance	protein/Dioxygenase	superfamily
CppA_C	PF14507.6	gi|408405883|ref|YP_006863866.1|	-	0.11	13.2	0.0	0.11	13.2	0.0	1.2	1	0	0	1	1	1	0	CppA	C-terminal
MEDS	PF14417.6	gi|408405886|ref|YP_006863869.1|	-	0.00014	21.8	0.0	0.00015	21.7	0.0	1.1	1	0	0	1	1	1	1	MEDS:	MEthanogen/methylotroph,	DcmR	Sensory	domain
SelR	PF01641.18	gi|408405887|ref|YP_006863870.1|	-	9.3e-40	135.5	0.0	1.1e-39	135.2	0.0	1.0	1	0	0	1	1	1	1	SelR	domain
Tnp_zf-ribbon_2	PF13842.6	gi|408405887|ref|YP_006863870.1|	-	0.011	16.5	0.2	4.8	8.1	0.1	2.4	2	0	0	2	2	2	0	DDE_Tnp_1-like	zinc-ribbon
zf-CCHC_2	PF13696.6	gi|408405887|ref|YP_006863870.1|	-	0.034	14.0	0.3	0.085	12.7	0.3	1.7	1	0	0	1	1	1	0	Zinc	knuckle
zf_UBZ	PF18439.1	gi|408405887|ref|YP_006863870.1|	-	0.041	13.5	1.2	2.2	8.0	0.1	2.3	2	0	0	2	2	2	0	Ubiquitin-Binding	Zinc	Finger
Yippee-Mis18	PF03226.14	gi|408405887|ref|YP_006863870.1|	-	0.06	13.6	0.1	0.75	10.0	0.0	2.1	2	0	0	2	2	2	0	Yippee	zinc-binding/DNA-binding	/Mis18,	centromere	assembly
RIG-I_C-RD	PF11648.8	gi|408405887|ref|YP_006863870.1|	-	0.063	13.5	0.1	3.4	7.9	0.0	2.1	2	0	0	2	2	2	0	C-terminal	domain	of	RIG-I
zf-RRN7	PF11781.8	gi|408405887|ref|YP_006863870.1|	-	0.12	12.1	4.3	0.56	9.9	1.4	2.2	2	0	0	2	2	2	0	Zinc-finger	of	RNA-polymerase	I-specific	TFIIB,	Rrn7
DZR	PF12773.7	gi|408405887|ref|YP_006863870.1|	-	0.14	12.2	2.2	1.2	9.2	2.3	2.2	1	1	0	1	1	1	0	Double	zinc	ribbon
Ribosomal_L37e	PF01907.19	gi|408405887|ref|YP_006863870.1|	-	0.19	11.9	0.4	0.19	11.9	0.4	2.6	3	0	0	3	3	3	0	Ribosomal	protein	L37e
PMSR	PF01625.21	gi|408405888|ref|YP_006863871.1|	-	1.9e-65	219.8	0.2	2.3e-65	219.5	0.2	1.1	1	0	0	1	1	1	1	Peptide	methionine	sulfoxide	reductase
Pallilysin	PF18663.1	gi|408405888|ref|YP_006863871.1|	-	0.0084	16.1	0.1	0.012	15.5	0.1	1.2	1	0	0	1	1	1	1	Pallilysin	beta	barrel	domain
DUF2795	PF11387.8	gi|408405889|ref|YP_006863872.1|	-	3.6e-11	43.1	0.1	5.7e-11	42.4	0.1	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF2795)
zinc-ribbons_6	PF07191.12	gi|408405891|ref|YP_006863874.1|	-	0.00029	20.8	0.9	0.14	12.2	0.0	2.1	2	0	0	2	2	2	2	zinc-ribbons
TF_Zn_Ribbon	PF08271.12	gi|408405891|ref|YP_006863874.1|	-	0.0033	16.9	1.1	0.26	10.8	0.1	2.2	2	0	0	2	2	2	1	TFIIB	zinc-binding
Nudix_N_2	PF14803.6	gi|408405891|ref|YP_006863874.1|	-	0.0048	16.8	2.9	0.013	15.4	0.2	2.1	2	0	0	2	2	2	1	Nudix	N-terminal
DNA_ligase_ZBD	PF03119.16	gi|408405891|ref|YP_006863874.1|	-	0.0054	16.7	4.1	0.01	15.9	4.1	1.6	1	1	0	1	1	1	1	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
zf-ribbon_3	PF13248.6	gi|408405891|ref|YP_006863874.1|	-	0.0059	16.0	0.1	0.55	9.7	0.0	2.2	2	0	0	2	2	2	1	zinc-ribbon	domain
zf-C2H2_3	PF13878.6	gi|408405891|ref|YP_006863874.1|	-	0.0069	16.2	0.4	0.33	10.8	0.0	2.1	2	0	0	2	2	2	1	zinc-finger	of	acetyl-transferase	ESCO
zf-RRN7	PF11781.8	gi|408405891|ref|YP_006863874.1|	-	0.013	15.2	3.8	0.83	9.4	0.1	2.2	2	0	0	2	2	2	0	Zinc-finger	of	RNA-polymerase	I-specific	TFIIB,	Rrn7
DUF3973	PF13119.6	gi|408405891|ref|YP_006863874.1|	-	0.016	15.3	0.3	0.027	14.6	0.3	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3973)
DZR	PF12773.7	gi|408405891|ref|YP_006863874.1|	-	0.017	15.2	0.1	0.029	14.4	0.1	1.4	1	1	0	1	1	1	0	Double	zinc	ribbon
OrfB_Zn_ribbon	PF07282.11	gi|408405891|ref|YP_006863874.1|	-	0.02	14.8	1.1	0.072	13.0	1.1	1.7	1	1	0	1	1	1	0	Putative	transposase	DNA-binding	domain
Zn_Tnp_IS1595	PF12760.7	gi|408405891|ref|YP_006863874.1|	-	0.021	14.8	2.5	0.081	12.9	2.5	1.8	1	1	0	1	1	1	0	Transposase	zinc-ribbon	domain
Lar_restr_allev	PF14354.6	gi|408405891|ref|YP_006863874.1|	-	0.025	14.9	0.9	0.047	14.1	0.9	1.4	1	1	0	1	1	1	0	Restriction	alleviation	protein	Lar
zf-TFIIB	PF13453.6	gi|408405891|ref|YP_006863874.1|	-	0.038	13.3	3.9	0.17	11.2	3.9	1.9	1	1	0	1	1	1	0	Transcription	factor	zinc-finger
DUF678	PF05077.12	gi|408405891|ref|YP_006863874.1|	-	0.039	14.1	0.1	0.22	11.7	0.0	1.9	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF678)
Trm112p	PF03966.16	gi|408405891|ref|YP_006863874.1|	-	0.041	14.5	0.6	0.052	14.1	0.6	1.2	1	0	0	1	1	1	0	Trm112p-like	protein
Mut7-C	PF01927.16	gi|408405891|ref|YP_006863874.1|	-	0.041	14.0	0.1	0.041	14.0	0.1	1.0	1	0	0	1	1	1	0	Mut7-C	RNAse	domain
zf_UBZ	PF18439.1	gi|408405891|ref|YP_006863874.1|	-	0.06	12.9	1.9	2.2	7.9	0.3	2.1	2	0	0	2	2	2	0	Ubiquitin-Binding	Zinc	Finger
Zn-ribbon_8	PF09723.10	gi|408405891|ref|YP_006863874.1|	-	0.078	13.1	5.5	0.68	10.1	0.2	2.1	1	1	0	2	2	2	0	Zinc	ribbon	domain
zf-ISL3	PF14690.6	gi|408405891|ref|YP_006863874.1|	-	0.079	13.6	1.6	8.5	7.1	0.1	2.2	2	0	0	2	2	2	0	zinc-finger	of	transposase	IS204/IS1001/IS1096/IS1165
zf-C2H2_4	PF13894.6	gi|408405891|ref|YP_006863874.1|	-	0.084	13.8	1.3	6.9	7.8	0.2	2.2	2	0	0	2	2	2	0	C2H2-type	zinc	finger
TFIIS_C	PF01096.18	gi|408405891|ref|YP_006863874.1|	-	0.14	12.1	2.6	4.5	7.2	0.4	2.2	2	0	0	2	2	2	0	Transcription	factor	S-II	(TFIIS)
zinc_ribbon_2	PF13240.6	gi|408405891|ref|YP_006863874.1|	-	0.18	11.5	3.2	1.2	8.9	0.3	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
zf-H2C2_2	PF13465.6	gi|408405891|ref|YP_006863874.1|	-	0.33	11.5	2.9	11	6.6	0.4	2.1	2	0	0	2	2	2	0	Zinc-finger	double	domain
DUF983	PF06170.12	gi|408405891|ref|YP_006863874.1|	-	0.36	11.3	1.1	2.6	8.5	1.1	2.0	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF983)
zf-C2H2_6	PF13912.6	gi|408405891|ref|YP_006863874.1|	-	1.5	8.9	5.0	2.3	8.3	0.9	2.1	2	0	0	2	2	2	0	C2H2-type	zinc	finger
zf-IS66	PF13005.7	gi|408405891|ref|YP_006863874.1|	-	5.5	7.5	8.6	1.2	9.6	0.5	2.2	1	1	1	2	2	2	0	zinc-finger	binding	domain	of	transposase	IS66
Aldo_ket_red	PF00248.21	gi|408405892|ref|YP_006863875.1|	-	7.5e-61	205.9	0.0	3.5e-60	203.7	0.0	1.8	1	1	0	1	1	1	1	Aldo/keto	reductase	family
ScsC_N	PF18312.1	gi|408405892|ref|YP_006863875.1|	-	4.2	7.3	6.0	3.6	7.5	0.0	2.9	3	0	0	3	3	3	0	Copper	resistance	protein	ScsC	N-terminal	domain
DUF1772	PF08592.11	gi|408405893|ref|YP_006863876.1|	-	0.02	15.2	0.0	0.025	14.9	0.0	1.3	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF1772)
DUF5527	PF17665.1	gi|408405893|ref|YP_006863876.1|	-	0.13	11.8	0.0	0.16	11.5	0.0	1.2	1	0	0	1	1	1	0	Family	of	unknown	function	(DUF5527)
DUF5305	PF17231.2	gi|408405893|ref|YP_006863876.1|	-	0.6	9.5	0.0	0.6	9.5	0.0	1.9	1	1	1	2	2	2	0	Family	of	unknown	function	(DUF5305)
Cellulase	PF00150.18	gi|408405896|ref|YP_006863879.1|	-	0.00039	19.9	0.0	0.00044	19.8	0.0	1.1	1	0	0	1	1	1	1	Cellulase	(glycosyl	hydrolase	family	5)
AP_endonuc_2	PF01261.24	gi|408405896|ref|YP_006863879.1|	-	0.16	11.4	0.0	0.19	11.2	0.0	1.1	1	0	0	1	1	1	0	Xylose	isomerase-like	TIM	barrel
Radical_SAM	PF04055.21	gi|408405897|ref|YP_006863880.1|	-	3.7e-07	30.7	0.0	1e-06	29.3	0.0	1.7	1	0	0	1	1	1	1	Radical	SAM	superfamily
Fer4_12	PF13353.6	gi|408405897|ref|YP_006863880.1|	-	1.8e-05	25.1	0.0	4.7e-05	23.7	0.0	1.7	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
Fer4_14	PF13394.6	gi|408405897|ref|YP_006863880.1|	-	0.11	12.6	4.6	0.11	12.6	0.0	2.8	3	1	0	3	3	3	0	4Fe-4S	single	cluster	domain
MEDS	PF14417.6	gi|408405901|ref|YP_006863884.1|	-	4.5e-07	29.8	0.0	8.1e-07	29.0	0.0	1.5	2	0	0	2	2	2	1	MEDS:	MEthanogen/methylotroph,	DcmR	Sensory	domain
Rdx	PF10262.9	gi|408405902|ref|YP_006863885.1|	-	0.12	12.6	0.7	0.59	10.4	0.3	2.1	2	0	0	2	2	2	0	Rdx	family
YcaO_C	PF18381.1	gi|408405903|ref|YP_006863886.1|	-	0.0036	17.2	0.0	0.0038	17.1	0.0	1.1	1	0	0	1	1	1	1	YcaO	cyclodehydratase	C-terminal	domain
Tom37_C	PF11801.8	gi|408405903|ref|YP_006863886.1|	-	0.1	12.5	0.1	0.42	10.6	0.0	1.7	1	1	1	2	2	2	0	Tom37	C-terminal	domain
Response_reg	PF00072.24	gi|408405904|ref|YP_006863887.1|	-	8.4e-20	71.0	0.0	1e-19	70.7	0.0	1.1	1	0	0	1	1	1	1	Response	regulator	receiver	domain
dCache_1	PF02743.18	gi|408405906|ref|YP_006863889.1|	-	0.00022	21.1	0.3	0.00029	20.7	0.3	1.3	1	0	0	1	1	1	1	Cache	domain
HAMP	PF00672.25	gi|408405906|ref|YP_006863889.1|	-	0.0039	17.5	0.0	0.0068	16.8	0.0	1.4	1	0	0	1	1	1	1	HAMP	domain
Alpha-E	PF04168.12	gi|408405906|ref|YP_006863889.1|	-	0.21	11.3	0.0	0.3	10.8	0.0	1.3	1	0	0	1	1	1	0	A	predicted	alpha-helical	domain	with	a	conserved	ER	motif.
HisKA	PF00512.25	gi|408405907|ref|YP_006863890.1|	-	0.0017	18.3	0.1	0.002	18.1	0.1	1.1	1	0	0	1	1	1	1	His	Kinase	A	(phospho-acceptor)	domain
HATPase_c	PF02518.26	gi|408405908|ref|YP_006863891.1|	-	1.7e-10	41.4	0.1	1.9e-10	41.2	0.1	1.1	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
Response_reg	PF00072.24	gi|408405909|ref|YP_006863892.1|	-	6.9e-08	32.6	0.7	1.2e-07	31.9	0.2	1.6	2	0	0	2	2	2	1	Response	regulator	receiver	domain
HATPase_c	PF02518.26	gi|408405910|ref|YP_006863893.1|	-	7.9e-21	74.7	0.3	9.7e-21	74.4	0.3	1.1	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HATPase_c_2	PF13581.6	gi|408405910|ref|YP_006863893.1|	-	0.0005	20.0	0.0	0.00073	19.5	0.0	1.2	1	0	0	1	1	1	1	Histidine	kinase-like	ATPase	domain
HMG_box	PF00505.19	gi|408405911|ref|YP_006863894.1|	-	0.081	13.4	0.0	0.21	12.0	0.0	1.7	1	0	0	1	1	1	0	HMG	(high	mobility	group)	box
DUF4257	PF14074.6	gi|408405913|ref|YP_006863896.1|	-	0.013	15.7	0.7	0.47	10.7	0.1	2.5	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF4257)
DUF3169	PF11368.8	gi|408405913|ref|YP_006863896.1|	-	0.028	14.0	0.3	0.039	13.5	0.3	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3169)
DUF543	PF04418.12	gi|408405913|ref|YP_006863896.1|	-	3.8	7.6	5.3	28	4.8	0.2	2.9	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF543)
Trep_Strep	PF09605.10	gi|408405914|ref|YP_006863897.1|	-	0.015	15.3	11.2	0.018	15.1	11.2	1.1	1	0	0	1	1	1	0	Hypothetical	bacterial	integral	membrane	protein	(Trep_Strep)
DUF2937	PF11157.8	gi|408405914|ref|YP_006863897.1|	-	0.1	12.3	0.0	0.1	12.3	0.0	2.7	4	0	0	4	4	4	0	Protein	of	unknown	function	(DUF2937)
DUF892	PF05974.12	gi|408405915|ref|YP_006863898.1|	-	3.9e-11	43.2	3.2	1.6e-06	28.3	0.1	2.4	2	1	0	2	2	2	2	Domain	of	unknown	function	(DUF892)
Coat_F	PF07875.12	gi|408405915|ref|YP_006863898.1|	-	0.068	13.4	0.1	0.068	13.4	0.1	2.1	3	0	0	3	3	3	0	Coat	F	domain
Sas6_CC	PF18594.1	gi|408405915|ref|YP_006863898.1|	-	0.19	11.5	0.1	0.19	11.5	0.1	2.7	3	1	0	3	3	3	0	Sas6/XLF/XRCC4	coiled-coil	domain
DUF1910	PF08928.10	gi|408405915|ref|YP_006863898.1|	-	0.53	10.3	3.0	0.67	10.0	0.8	2.1	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF1910)
Rad50_zn_hook	PF04423.14	gi|408405917|ref|YP_006863900.1|	-	0.017	14.9	0.6	0.032	14.1	0.6	1.5	1	0	0	1	1	1	0	Rad50	zinc	hook	motif
Cupredoxin_1	PF13473.6	gi|408405918|ref|YP_006863901.1|	-	1.7e-09	37.7	0.3	2.6e-09	37.1	0.3	1.2	1	0	0	1	1	1	1	Cupredoxin-like	domain
Copper-bind	PF00127.20	gi|408405918|ref|YP_006863901.1|	-	0.012	16.0	0.8	0.019	15.4	0.8	1.4	1	1	0	1	1	1	0	Copper	binding	proteins,	plastocyanin/azurin	family
MCPVI	PF02993.14	gi|408405918|ref|YP_006863901.1|	-	0.19	11.5	0.0	0.25	11.2	0.0	1.2	1	0	0	1	1	1	0	Minor	capsid	protein	VI
DUF2207	PF09972.9	gi|408405919|ref|YP_006863902.1|	-	0.061	12.1	0.2	0.066	12.0	0.2	1.1	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2207)
DUF2976	PF11190.8	gi|408405919|ref|YP_006863902.1|	-	0.81	9.5	8.0	0.091	12.6	3.4	1.8	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF2976)
DUF4231	PF14015.6	gi|408405919|ref|YP_006863902.1|	-	0.85	10.1	4.6	2.1	8.8	4.6	1.6	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF4231)
PsbX	PF06596.11	gi|408405919|ref|YP_006863902.1|	-	8.1	6.5	14.0	2	8.5	3.2	2.3	2	0	0	2	2	2	0	Photosystem	II	reaction	centre	X	protein	(PsbX)
HTH_45	PF14947.6	gi|408405920|ref|YP_006863903.1|	-	1.5e-07	31.2	0.2	2.5e-07	30.6	0.2	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix
PadR	PF03551.14	gi|408405920|ref|YP_006863903.1|	-	0.038	14.0	0.0	0.065	13.2	0.0	1.4	1	0	0	1	1	1	0	Transcriptional	regulator	PadR-like	family
TrmB	PF01978.19	gi|408405920|ref|YP_006863903.1|	-	0.049	13.5	0.0	0.079	12.9	0.0	1.3	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
MarR	PF01047.22	gi|408405920|ref|YP_006863903.1|	-	0.051	13.5	0.6	0.064	13.2	0.0	1.5	2	0	0	2	2	2	0	MarR	family
DUF4344	PF14247.6	gi|408405920|ref|YP_006863903.1|	-	0.063	12.9	0.0	0.09	12.4	0.0	1.4	1	1	0	1	1	1	0	Putative	metallopeptidase
DUF2680	PF10925.8	gi|408405920|ref|YP_006863903.1|	-	0.09	12.8	1.6	1.3	9.1	0.1	2.2	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2680)
Acetyltransf_13	PF13880.6	gi|408405920|ref|YP_006863903.1|	-	0.14	12.2	0.0	0.22	11.5	0.0	1.3	1	0	0	1	1	1	0	ESCO1/2	acetyl-transferase
HATPase_c	PF02518.26	gi|408405921|ref|YP_006863904.1|	-	2.6e-30	105.2	0.3	3.4e-29	101.6	0.0	2.8	3	0	0	3	3	3	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HisKA	PF00512.25	gi|408405921|ref|YP_006863904.1|	-	1.4e-11	44.3	2.2	3.1e-11	43.1	0.4	2.6	2	0	0	2	2	2	1	His	Kinase	A	(phospho-acceptor)	domain
HATPase_c_2	PF13581.6	gi|408405921|ref|YP_006863904.1|	-	2.3e-07	30.8	0.1	1.4e-06	28.3	0.0	2.3	2	0	0	2	2	2	1	Histidine	kinase-like	ATPase	domain
Regulator_TrmB	PF11495.8	gi|408405921|ref|YP_006863904.1|	-	1.1e-05	24.8	1.0	7e-05	22.1	0.1	2.4	2	0	0	2	2	2	1	Archaeal	transcriptional	regulator	TrmB
HATPase_c_5	PF14501.6	gi|408405921|ref|YP_006863904.1|	-	7.2e-05	22.6	0.0	0.00088	19.1	0.0	2.7	2	1	1	3	3	3	1	GHKL	domain
PLDc_2	PF13091.6	gi|408405921|ref|YP_006863904.1|	-	7.9e-05	22.6	0.2	0.0067	16.3	0.0	2.9	3	0	0	3	3	3	1	PLD-like	domain
HATPase_c_3	PF13589.6	gi|408405921|ref|YP_006863904.1|	-	0.0024	17.7	0.0	0.028	14.3	0.0	2.5	2	0	0	2	2	2	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
Matrilin_ccoil	PF10393.9	gi|408405921|ref|YP_006863904.1|	-	0.13	12.2	0.4	0.4	10.6	0.4	1.9	1	0	0	1	1	1	0	Trimeric	coiled-coil	oligomerisation	domain	of	matrilin
DUF496	PF04363.12	gi|408405921|ref|YP_006863904.1|	-	0.26	11.4	4.9	1.8	8.7	0.3	3.0	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF496)
Spore_III_AB	PF09548.10	gi|408405921|ref|YP_006863904.1|	-	0.62	10.2	4.7	0.9	9.6	3.0	2.1	2	0	0	2	2	2	0	Stage	III	sporulation	protein	AB	(spore_III_AB)
Snapin_Pallidin	PF14712.6	gi|408405921|ref|YP_006863904.1|	-	2.1	8.9	7.2	0.45	11.0	0.2	2.5	2	0	0	2	2	2	0	Snapin/Pallidin
Response_reg	PF00072.24	gi|408405922|ref|YP_006863905.1|	-	1.6e-14	54.0	0.0	1.9e-14	53.7	0.0	1.1	1	0	0	1	1	1	1	Response	regulator	receiver	domain
REF	PF05755.12	gi|408405923|ref|YP_006863906.1|	-	0.022	14.6	0.0	0.026	14.3	0.0	1.0	1	0	0	1	1	1	0	Rubber	elongation	factor	protein	(REF)
DUF5615	PF18480.1	gi|408405925|ref|YP_006863908.1|	-	5.2e-07	29.3	0.1	8.3e-07	28.7	0.1	1.3	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF5615)
PIN_10	PF18478.1	gi|408405925|ref|YP_006863908.1|	-	0.00039	20.6	0.3	0.00087	19.5	0.1	1.6	2	0	0	2	2	2	1	PIN	like	domain
Mut7-C	PF01927.16	gi|408405925|ref|YP_006863908.1|	-	0.015	15.4	0.3	0.02	15.0	0.3	1.4	1	1	0	1	1	1	0	Mut7-C	RNAse	domain
DUF188	PF02639.14	gi|408405925|ref|YP_006863908.1|	-	0.041	13.6	0.3	0.11	12.2	0.3	1.7	1	1	0	1	1	1	0	Uncharacterized	BCR,	YaiI/YqxD	family	COG1671
DUF2590	PF10761.9	gi|408405925|ref|YP_006863908.1|	-	0.042	14.0	0.3	0.066	13.3	0.3	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2590)
LTXXQ	PF07813.12	gi|408405927|ref|YP_006863910.1|	-	0.0015	19.3	0.0	0.0022	18.7	0.0	1.3	1	0	0	1	1	1	1	LTXXQ	motif	family	protein
DUF2680	PF10925.8	gi|408405927|ref|YP_006863910.1|	-	0.042	13.9	0.1	0.16	12.0	0.0	1.8	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2680)
HxlR	PF01638.17	gi|408405928|ref|YP_006863911.1|	-	1.1e-07	31.5	0.0	1.2e-07	31.5	0.0	1.0	1	0	0	1	1	1	1	HxlR-like	helix-turn-helix
HTH_24	PF13412.6	gi|408405928|ref|YP_006863911.1|	-	0.0048	16.4	0.1	0.014	15.0	0.0	1.7	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
MarR	PF01047.22	gi|408405928|ref|YP_006863911.1|	-	0.0092	15.9	0.0	0.013	15.4	0.0	1.3	1	0	0	1	1	1	1	MarR	family
HxlR	PF01638.17	gi|408405929|ref|YP_006863912.1|	-	0.00011	21.9	0.0	0.00012	21.9	0.0	1.0	1	0	0	1	1	1	1	HxlR-like	helix-turn-helix
Flavi_NS4A	PF01350.17	gi|408405931|ref|YP_006863914.1|	-	0.032	14.2	0.0	0.032	14.2	0.0	1.0	1	0	0	1	1	1	0	Flavivirus	non-structural	protein	NS4A
CD34_antigen	PF06365.12	gi|408405931|ref|YP_006863914.1|	-	0.18	11.4	0.1	0.21	11.1	0.1	1.0	1	0	0	1	1	1	0	CD34/Podocalyxin	family
Cyt_c_ox_IV	PF12270.8	gi|408405934|ref|YP_006863917.1|	-	0.071	13.2	0.7	0.071	13.2	0.7	2.0	2	1	1	3	3	3	0	Cytochrome	c	oxidase	subunit	IV
AsnC_trans_reg	PF01037.21	gi|408405935|ref|YP_006863918.1|	-	0.00042	20.2	1.3	0.0011	18.9	1.3	1.6	1	1	0	1	1	1	1	Lrp/AsnC	ligand	binding	domain
DZR	PF12773.7	gi|408405936|ref|YP_006863919.1|	-	0.0099	15.9	2.2	0.015	15.3	2.2	1.2	1	0	0	1	1	1	1	Double	zinc	ribbon
UbiA	PF01040.18	gi|408405936|ref|YP_006863919.1|	-	0.059	12.7	2.0	0.065	12.5	2.0	1.1	1	0	0	1	1	1	0	UbiA	prenyltransferase	family
zf-RRN7	PF11781.8	gi|408405936|ref|YP_006863919.1|	-	0.079	12.7	3.7	0.79	9.5	1.0	2.3	2	0	0	2	2	2	0	Zinc-finger	of	RNA-polymerase	I-specific	TFIIB,	Rrn7
NRDD	PF13597.6	gi|408405936|ref|YP_006863919.1|	-	0.088	11.6	1.4	0.12	11.1	1.4	1.1	1	0	0	1	1	1	0	Anaerobic	ribonucleoside-triphosphate	reductase
zf-NADH-PPase	PF09297.11	gi|408405936|ref|YP_006863919.1|	-	0.09	12.5	5.6	0.53	10.0	1.4	2.2	2	0	0	2	2	2	0	NADH	pyrophosphatase	zinc	ribbon	domain
Zn-ribbon_8	PF09723.10	gi|408405936|ref|YP_006863919.1|	-	0.16	12.1	5.4	0.49	10.6	5.4	1.7	1	1	0	1	1	1	0	Zinc	ribbon	domain
PrgI	PF12666.7	gi|408405936|ref|YP_006863919.1|	-	0.16	12.7	1.3	0.23	12.2	1.3	1.2	1	0	0	1	1	1	0	PrgI	family	protein
HypA	PF01155.19	gi|408405936|ref|YP_006863919.1|	-	0.19	11.8	1.6	0.26	11.3	1.6	1.1	1	0	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
zinc_ribbon_2	PF13240.6	gi|408405936|ref|YP_006863919.1|	-	0.23	11.2	5.9	1.5	8.6	5.9	2.0	1	1	0	1	1	1	0	zinc-ribbon	domain
DUF2207	PF09972.9	gi|408405936|ref|YP_006863919.1|	-	0.39	9.4	0.7	0.43	9.3	0.7	1.0	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2207)
PolC_DP2	PF03833.13	gi|408405936|ref|YP_006863919.1|	-	0.56	8.0	1.1	0.74	7.6	1.1	1.1	1	0	0	1	1	1	0	DNA	polymerase	II	large	subunit	DP2
Ribosomal_L24e	PF01246.20	gi|408405938|ref|YP_006863921.1|	-	2e-18	66.3	2.0	2.5e-18	66.0	2.0	1.1	1	0	0	1	1	1	1	Ribosomal	protein	L24e
zf-FCS	PF06467.14	gi|408405938|ref|YP_006863921.1|	-	0.023	14.7	1.7	0.22	11.5	1.9	2.1	1	1	1	2	2	2	0	MYM-type	Zinc	finger	with	FCS	sequence	motif
Arc_trans_TRASH	PF08394.10	gi|408405938|ref|YP_006863921.1|	-	0.027	14.8	0.1	0.041	14.2	0.1	1.3	1	0	0	1	1	1	0	Archaeal	TRASH	domain
A2L_zn_ribbon	PF08792.10	gi|408405938|ref|YP_006863921.1|	-	0.043	13.5	0.7	2.2	8.1	0.1	2.2	2	0	0	2	2	2	0	A2L	zinc	ribbon	domain
DUF2116	PF09889.9	gi|408405938|ref|YP_006863921.1|	-	0.12	12.4	0.7	4.5	7.3	0.0	2.1	2	0	0	2	2	2	0	Uncharacterized	protein	containing	a	Zn-ribbon	(DUF2116)
NosL	PF05573.12	gi|408405938|ref|YP_006863921.1|	-	0.14	12.5	0.0	0.15	12.4	0.0	1.1	1	0	0	1	1	1	0	NosL
HATPase_c	PF02518.26	gi|408405939|ref|YP_006863922.1|	-	3.1e-14	53.4	0.0	8e-14	52.1	0.0	1.7	2	0	0	2	2	2	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HisKA	PF00512.25	gi|408405939|ref|YP_006863922.1|	-	1.1e-07	31.7	1.9	2.8e-07	30.5	1.4	1.9	2	0	0	2	2	2	1	His	Kinase	A	(phospho-acceptor)	domain
Big_1	PF02369.16	gi|408405939|ref|YP_006863922.1|	-	0.005	16.8	1.1	0.0083	16.1	1.1	1.3	1	0	0	1	1	1	1	Bacterial	Ig-like	domain	(group	1)
HATPase_c_3	PF13589.6	gi|408405939|ref|YP_006863922.1|	-	0.069	13.0	0.0	0.12	12.2	0.0	1.5	1	0	0	1	1	1	0	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
DUF1854	PF08909.11	gi|408405939|ref|YP_006863922.1|	-	0.08	12.8	0.7	0.13	12.1	0.7	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1854)
DUF2993	PF11209.8	gi|408405939|ref|YP_006863922.1|	-	0.1	12.9	0.1	0.13	12.4	0.1	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2993)
Aminotran_3	PF00202.21	gi|408405942|ref|YP_006863925.1|	-	1.6e-46	158.8	0.0	1.7e-46	158.7	0.0	1.0	1	0	0	1	1	1	1	Aminotransferase	class-III
Beta_elim_lyase	PF01212.21	gi|408405942|ref|YP_006863925.1|	-	0.029	13.7	0.0	0.039	13.2	0.0	1.2	1	0	0	1	1	1	0	Beta-eliminating	lyase
Aminotran_1_2	PF00155.21	gi|408405942|ref|YP_006863925.1|	-	0.044	12.9	0.0	0.065	12.4	0.0	1.2	1	0	0	1	1	1	0	Aminotransferase	class	I	and	II
Aminotran_3	PF00202.21	gi|408405943|ref|YP_006863926.1|	-	0.032	12.9	0.0	0.037	12.7	0.0	1.1	1	0	0	1	1	1	0	Aminotransferase	class-III
zf-C2H2_4	PF13894.6	gi|408405944|ref|YP_006863927.1|	-	0.0028	18.3	0.3	0.0049	17.6	0.3	1.4	1	0	0	1	1	1	1	C2H2-type	zinc	finger
zf-C2H2_jaz	PF12171.8	gi|408405944|ref|YP_006863927.1|	-	0.013	15.8	0.1	0.021	15.1	0.1	1.3	1	0	0	1	1	1	0	Zinc-finger	double-stranded	RNA-binding
DUF2171	PF09939.9	gi|408405944|ref|YP_006863927.1|	-	0.015	15.6	0.4	0.026	14.8	0.4	1.4	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2171)
zf-C2H2	PF00096.26	gi|408405944|ref|YP_006863927.1|	-	0.041	14.4	0.2	0.073	13.6	0.2	1.4	1	0	0	1	1	1	0	Zinc	finger,	C2H2	type
Actin_micro	PF17003.5	gi|408405944|ref|YP_006863927.1|	-	0.081	12.1	0.4	0.26	10.4	0.2	1.7	2	0	0	2	2	2	0	Putative	actin-like	family
zf-C2H2_6	PF13912.6	gi|408405944|ref|YP_006863927.1|	-	0.086	12.9	0.1	0.15	12.1	0.1	1.4	1	0	0	1	1	1	0	C2H2-type	zinc	finger
zf-met	PF12874.7	gi|408405944|ref|YP_006863927.1|	-	0.19	12.2	0.2	0.31	11.5	0.2	1.4	1	0	0	1	1	1	0	Zinc-finger	of	C2H2	type
AmoC	PF04896.12	gi|408405946|ref|YP_006863929.1|	-	1.5e-13	50.6	6.7	2e-13	50.2	6.7	1.1	1	0	0	1	1	1	1	Ammonia	monooxygenase/methane	monooxygenase,	subunit	C
RTA1	PF04479.13	gi|408405946|ref|YP_006863929.1|	-	0.015	14.9	0.2	0.025	14.2	0.2	1.2	1	0	0	1	1	1	0	RTA1	like	protein
HTH_32	PF13565.6	gi|408405947|ref|YP_006863930.1|	-	0.1	13.2	0.0	0.2	12.3	0.0	1.5	1	0	0	1	1	1	0	Homeodomain-like	domain
Sec23_helical	PF04815.15	gi|408405947|ref|YP_006863930.1|	-	0.12	12.2	0.0	0.26	11.1	0.0	1.5	1	0	0	1	1	1	0	Sec23/Sec24	helical	domain
Ammonium_transp	PF00909.21	gi|408405948|ref|YP_006863931.1|	-	5.6e-116	387.5	36.0	6.8e-116	387.2	36.0	1.1	1	0	0	1	1	1	1	Ammonium	Transporter	Family
DUF3169	PF11368.8	gi|408405948|ref|YP_006863931.1|	-	3.4	7.1	8.9	1.6	8.2	4.0	2.7	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF3169)
K-cyclin_vir_C	PF09080.10	gi|408405948|ref|YP_006863931.1|	-	5.5	7.5	7.0	12	6.4	0.0	2.6	2	0	0	2	2	2	0	K	cyclin,	C	terminal
NIF3	PF01784.18	gi|408405949|ref|YP_006863932.1|	-	0.0015	18.3	0.0	0.0018	18.0	0.0	1.1	1	0	0	1	1	1	1	NIF3	(NGG1p	interacting	factor	3)
ABC_tran	PF00005.27	gi|408405950|ref|YP_006863933.1|	-	8.8e-34	117.0	0.0	1.2e-33	116.5	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|408405950|ref|YP_006863933.1|	-	8.3e-08	32.4	2.2	0.0032	17.3	0.1	2.1	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
IstB_IS21	PF01695.17	gi|408405950|ref|YP_006863933.1|	-	3.4e-06	26.9	0.0	0.011	15.5	0.0	2.2	2	0	0	2	2	2	2	IstB-like	ATP	binding	protein
AAA_29	PF13555.6	gi|408405950|ref|YP_006863933.1|	-	4.8e-05	23.0	0.1	9.2e-05	22.1	0.1	1.5	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_22	PF13401.6	gi|408405950|ref|YP_006863933.1|	-	4.9e-05	23.6	0.3	0.0019	18.5	0.3	2.3	1	1	0	1	1	1	1	AAA	domain
SMC_N	PF02463.19	gi|408405950|ref|YP_006863933.1|	-	9.9e-05	21.9	0.5	0.13	11.6	0.2	2.2	2	0	0	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
RsgA_GTPase	PF03193.16	gi|408405950|ref|YP_006863933.1|	-	0.00024	21.1	0.0	0.0004	20.3	0.0	1.3	1	0	0	1	1	1	1	RsgA	GTPase
AAA_23	PF13476.6	gi|408405950|ref|YP_006863933.1|	-	0.0028	18.2	0.1	0.0052	17.3	0.1	1.5	1	0	0	1	1	1	1	AAA	domain
AAA_15	PF13175.6	gi|408405950|ref|YP_006863933.1|	-	0.0028	17.4	0.0	0.13	11.9	0.1	2.1	2	0	0	2	2	2	1	AAA	ATPase	domain
AAA_16	PF13191.6	gi|408405950|ref|YP_006863933.1|	-	0.0039	17.6	0.1	0.0053	17.2	0.1	1.5	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_25	PF13481.6	gi|408405950|ref|YP_006863933.1|	-	0.0057	16.3	0.0	0.42	10.2	0.0	2.2	2	0	0	2	2	2	1	AAA	domain
T2SSE	PF00437.20	gi|408405950|ref|YP_006863933.1|	-	0.024	13.7	0.1	0.04	13.0	0.1	1.3	1	0	0	1	1	1	0	Type	II/IV	secretion	system	protein
MMR_HSR1	PF01926.23	gi|408405950|ref|YP_006863933.1|	-	0.047	13.8	0.2	0.15	12.2	0.2	1.9	1	0	0	1	1	1	0	50S	ribosome-binding	GTPase
AAA_30	PF13604.6	gi|408405950|ref|YP_006863933.1|	-	0.052	13.3	0.1	0.19	11.4	0.0	1.8	2	0	0	2	2	2	0	AAA	domain
NB-ARC	PF00931.22	gi|408405950|ref|YP_006863933.1|	-	0.14	11.3	0.1	0.27	10.4	0.1	1.4	1	0	0	1	1	1	0	NB-ARC	domain
DUF2045	PF09741.9	gi|408405950|ref|YP_006863933.1|	-	0.16	11.3	0.0	0.25	10.7	0.0	1.2	1	0	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2045)
FtsX	PF02687.21	gi|408405951|ref|YP_006863934.1|	-	6.6e-16	58.6	1.2	6.6e-16	58.6	1.2	3.2	3	0	0	3	3	3	2	FtsX-like	permease	family
MacB_PCD	PF12704.7	gi|408405951|ref|YP_006863934.1|	-	2.5e-10	41.1	3.7	2.5e-10	41.1	3.7	2.5	2	2	0	2	2	2	1	MacB-like	periplasmic	core	domain
T3SS_ATPase_C	PF18269.1	gi|408405953|ref|YP_006863936.1|	-	0.19	11.6	0.0	0.31	10.9	0.0	1.3	1	0	0	1	1	1	0	T3SS	EscN	ATPase	C-terminal	domain
Pterin_4a	PF01329.19	gi|408405955|ref|YP_006863938.1|	-	9e-33	112.3	0.5	1e-32	112.2	0.5	1.0	1	0	0	1	1	1	1	Pterin	4	alpha	carbinolamine	dehydratase
EHD_N	PF16880.5	gi|408405955|ref|YP_006863938.1|	-	0.081	12.8	0.3	0.71	9.8	0.0	2.1	2	0	0	2	2	2	0	N-terminal	EH-domain	containing	protein
Fer4_7	PF12838.7	gi|408405956|ref|YP_006863939.1|	-	1.2e-09	38.5	2.5	0.00022	21.7	0.6	2.3	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4	PF00037.27	gi|408405956|ref|YP_006863939.1|	-	1.3e-09	37.4	11.8	1.8e-06	27.5	1.3	2.3	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_10	PF13237.6	gi|408405956|ref|YP_006863939.1|	-	1.5e-08	34.6	15.9	7.3e-08	32.4	5.7	1.8	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_16	PF13484.6	gi|408405956|ref|YP_006863939.1|	-	2.5e-07	31.5	15.7	1.6e-05	25.7	7.2	2.2	1	1	1	2	2	2	2	4Fe-4S	double	cluster	binding	domain
Fer4_9	PF13187.6	gi|408405956|ref|YP_006863939.1|	-	7.2e-07	29.3	7.8	4.1e-06	26.9	8.0	2.0	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_13	PF13370.6	gi|408405956|ref|YP_006863939.1|	-	5.8e-06	26.7	5.9	0.0083	16.7	0.2	2.7	3	0	0	3	3	3	2	4Fe-4S	single	cluster	domain	of	Ferredoxin	I
Fer4_8	PF13183.6	gi|408405956|ref|YP_006863939.1|	-	6.9e-06	26.4	5.9	0.0016	18.9	8.0	2.3	1	1	2	3	3	3	3	4Fe-4S	dicluster	domain
Fer4_6	PF12837.7	gi|408405956|ref|YP_006863939.1|	-	7e-06	25.9	12.2	0.0053	16.8	1.4	2.3	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_17	PF13534.6	gi|408405956|ref|YP_006863939.1|	-	1.7e-05	25.3	5.1	0.00018	22.0	6.2	1.9	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_21	PF14697.6	gi|408405956|ref|YP_006863939.1|	-	2.9e-05	24.1	9.0	0.0026	17.8	9.0	2.3	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_2	PF12797.7	gi|408405956|ref|YP_006863939.1|	-	0.0002	21.3	10.2	0.039	14.0	3.2	2.4	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_4	PF12800.7	gi|408405956|ref|YP_006863939.1|	-	0.00029	21.1	5.9	0.032	14.7	1.2	2.3	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_15	PF13459.6	gi|408405956|ref|YP_006863939.1|	-	0.00064	20.4	8.2	0.03	15.1	2.7	2.9	2	1	0	2	2	2	2	4Fe-4S	single	cluster	domain
Fer4_18	PF13746.6	gi|408405956|ref|YP_006863939.1|	-	0.001	19.2	7.0	0.0012	19.0	5.2	1.9	1	1	1	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_22	PF17179.4	gi|408405956|ref|YP_006863939.1|	-	0.015	16.1	0.4	5.7	7.9	0.1	2.3	2	0	0	2	2	2	0	4Fe-4S	dicluster	domain
Fer4_3	PF12798.7	gi|408405956|ref|YP_006863939.1|	-	0.029	15.3	13.9	1.4	10.0	0.8	2.4	2	0	0	2	2	2	0	4Fe-4S	binding	domain
OTCace_N	PF02729.21	gi|408405957|ref|YP_006863940.1|	-	3.7e-42	143.8	0.0	6.1e-42	143.1	0.0	1.4	1	0	0	1	1	1	1	Aspartate/ornithine	carbamoyltransferase,	carbamoyl-P	binding	domain
OTCace	PF00185.24	gi|408405957|ref|YP_006863940.1|	-	5.5e-33	114.3	0.0	7.7e-33	113.8	0.0	1.2	1	0	0	1	1	1	1	Aspartate/ornithine	carbamoyltransferase,	Asp/Orn	binding	domain
OrfB_Zn_ribbon	PF07282.11	gi|408405958|ref|YP_006863941.1|	-	3.2e-21	75.0	3.0	4.7e-21	74.5	1.8	1.9	2	0	0	2	2	2	1	Putative	transposase	DNA-binding	domain
OrfB_IS605	PF01385.19	gi|408405958|ref|YP_006863941.1|	-	4e-11	43.2	0.1	1.3e-10	41.5	0.1	1.9	1	0	0	1	1	1	1	Probable	transposase
Zn_Tnp_IS1595	PF12760.7	gi|408405958|ref|YP_006863941.1|	-	0.0034	17.3	5.5	0.0078	16.2	5.5	1.6	1	0	0	1	1	1	1	Transposase	zinc-ribbon	domain
IBR	PF01485.21	gi|408405958|ref|YP_006863941.1|	-	0.028	14.6	0.7	0.055	13.7	0.7	1.4	1	0	0	1	1	1	0	IBR	domain,	a	half	RING-finger	domain
DUF2387	PF09526.10	gi|408405958|ref|YP_006863941.1|	-	0.038	14.1	1.2	0.12	12.6	1.2	1.9	1	0	0	1	1	1	0	Probable	metal-binding	protein	(DUF2387)
Nore1-SARAH	PF16517.5	gi|408405958|ref|YP_006863941.1|	-	0.067	13.1	0.9	0.19	11.6	0.4	2.1	2	0	0	2	2	2	0	Novel	Ras	effector	1	C-terminal	SARAH	(Sav/Rassf/Hpo)	domain
RNA_POL_M_15KD	PF02150.16	gi|408405958|ref|YP_006863941.1|	-	0.089	12.7	2.0	0.19	11.6	2.0	1.5	1	0	0	1	1	1	0	RNA	polymerases	M/15	Kd	subunit
TF_Zn_Ribbon	PF08271.12	gi|408405958|ref|YP_006863941.1|	-	0.091	12.3	1.2	0.16	11.5	1.2	1.4	1	0	0	1	1	1	0	TFIIB	zinc-binding
Staufen_C	PF16482.5	gi|408405958|ref|YP_006863941.1|	-	0.11	12.6	0.0	0.21	11.7	0.0	1.4	1	0	0	1	1	1	0	Staufen	C-terminal	domain
Lar_restr_allev	PF14354.6	gi|408405958|ref|YP_006863941.1|	-	0.5	10.8	4.4	0.96	9.9	4.4	1.4	1	0	0	1	1	1	0	Restriction	alleviation	protein	Lar
Zn-ribbon_8	PF09723.10	gi|408405958|ref|YP_006863941.1|	-	0.82	9.8	3.2	17	5.7	0.1	2.5	2	0	0	2	2	2	0	Zinc	ribbon	domain
TackOD1	PF18551.1	gi|408405958|ref|YP_006863941.1|	-	0.95	9.1	7.8	0.21	11.2	4.4	1.6	2	0	0	2	2	2	0	Thaumarchaeal	output	domain	1
UPF0047	PF01894.17	gi|408405959|ref|YP_006863942.1|	-	1.4e-33	115.4	0.0	1.9e-33	115.0	0.0	1.1	1	0	0	1	1	1	1	Uncharacterised	protein	family	UPF0047
AA_synth	PF06684.11	gi|408405959|ref|YP_006863942.1|	-	0.015	14.8	0.0	0.025	14.1	0.0	1.3	1	0	0	1	1	1	0	Amino	acid	synthesis
Methyltransf_25	PF13649.6	gi|408405960|ref|YP_006863943.1|	-	1.3e-07	32.2	0.0	8.4e-06	26.4	0.0	2.2	2	0	0	2	2	2	1	Methyltransferase	domain
Methyltransf_11	PF08241.12	gi|408405960|ref|YP_006863943.1|	-	2.6e-06	28.0	0.0	0.0001	22.9	0.0	2.2	2	0	0	2	2	2	1	Methyltransferase	domain
Methyltransf_31	PF13847.6	gi|408405960|ref|YP_006863943.1|	-	0.0015	18.3	0.0	0.0044	16.8	0.0	1.7	2	0	0	2	2	2	1	Methyltransferase	domain
Ubie_methyltran	PF01209.18	gi|408405960|ref|YP_006863943.1|	-	0.0016	17.8	0.0	0.0068	15.8	0.0	1.9	2	0	0	2	2	2	1	ubiE/COQ5	methyltransferase	family
UPF0020	PF01170.18	gi|408405960|ref|YP_006863943.1|	-	0.0035	17.0	0.0	0.0052	16.5	0.0	1.2	1	0	0	1	1	1	1	Putative	RNA	methylase	family	UPF0020
DprA_WH	PF17782.1	gi|408405961|ref|YP_006863944.1|	-	4.4e-05	23.5	0.2	0.0001	22.3	0.0	1.7	2	0	0	2	2	2	1	DprA	winged	helix	domain
MarR	PF01047.22	gi|408405961|ref|YP_006863944.1|	-	0.011	15.7	0.1	0.021	14.8	0.1	1.5	1	0	0	1	1	1	0	MarR	family
HTH_34	PF13601.6	gi|408405961|ref|YP_006863944.1|	-	0.015	15.5	0.0	0.032	14.4	0.0	1.6	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
HTH_27	PF13463.6	gi|408405961|ref|YP_006863944.1|	-	0.024	15.1	0.0	0.048	14.1	0.0	1.6	1	1	0	1	1	1	0	Winged	helix	DNA-binding	domain
HTH_24	PF13412.6	gi|408405961|ref|YP_006863944.1|	-	0.053	13.1	0.2	0.28	10.8	0.1	2.4	2	1	0	2	2	2	0	Winged	helix-turn-helix	DNA-binding
TFIIE_alpha	PF02002.17	gi|408405961|ref|YP_006863944.1|	-	0.066	13.1	0.1	0.095	12.6	0.1	1.4	1	1	0	1	1	1	0	TFIIE	alpha	subunit
CD34_antigen	PF06365.12	gi|408405961|ref|YP_006863944.1|	-	0.15	11.6	0.0	0.23	11.0	0.0	1.2	1	0	0	1	1	1	0	CD34/Podocalyxin	family
Uso1_p115_C	PF04871.13	gi|408405962|ref|YP_006863945.1|	-	0.00048	20.5	0.3	0.0005	20.4	0.3	1.1	1	0	0	1	1	1	1	Uso1	/	p115	like	vesicle	tethering	protein,	C	terminal	region
Nif11	PF07862.11	gi|408405962|ref|YP_006863945.1|	-	0.041	14.2	0.3	0.056	13.8	0.3	1.3	1	0	0	1	1	1	0	Nif11	domain
F420H2_quin_red	PF04075.14	gi|408405963|ref|YP_006863946.1|	-	3.4e-10	40.2	0.0	3.6e-10	40.1	0.0	1.1	1	0	0	1	1	1	1	F420H(2)-dependent	quinone	reductase
DUF2255	PF10012.9	gi|408405963|ref|YP_006863946.1|	-	0.0045	17.1	0.4	0.0057	16.8	0.4	1.1	1	0	0	1	1	1	1	Uncharacterized	protein	conserved	in	bacteria	(DUF2255)
SoxZ	PF08770.11	gi|408405963|ref|YP_006863946.1|	-	0.12	12.2	0.0	0.17	11.7	0.0	1.5	1	1	0	1	1	1	0	Sulphur	oxidation	protein	SoxZ
TrkH	PF02386.16	gi|408405964|ref|YP_006863947.1|	-	1.1e-09	37.3	4.3	1.1e-09	37.3	4.3	1.1	1	0	0	1	1	1	1	Cation	transport	protein
TrkH	PF02386.16	gi|408406189|ref|YP_006863948.1|	-	0.00015	20.4	0.3	0.00031	19.3	0.2	1.5	2	0	0	2	2	2	1	Cation	transport	protein
TrkH	PF02386.16	gi|408405965|ref|YP_006863949.1|	-	2.3e-09	36.2	1.9	3.5e-09	35.6	1.9	1.3	1	0	0	1	1	1	1	Cation	transport	protein
DUF1673	PF07895.11	gi|408405965|ref|YP_006863949.1|	-	0.33	10.6	7.1	0.24	11.1	2.9	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1673)
CBS	PF00571.28	gi|408405966|ref|YP_006863950.1|	-	5.2e-08	33.2	0.2	2.4e-06	27.9	0.0	2.5	2	0	0	2	2	2	2	CBS	domain
CBS	PF00571.28	gi|408405967|ref|YP_006863951.1|	-	0.041	14.3	0.0	0.074	13.5	0.0	1.4	1	0	0	1	1	1	0	CBS	domain
eIF-6	PF01912.18	gi|408405968|ref|YP_006863952.1|	-	9.3e-61	204.7	0.2	1.1e-60	204.4	0.2	1.1	1	0	0	1	1	1	1	eIF-6	family
MoCF_biosynth	PF00994.24	gi|408405969|ref|YP_006863953.1|	-	5.2e-31	107.2	0.1	7.3e-31	106.8	0.1	1.2	1	0	0	1	1	1	1	Probable	molybdopterin	binding	domain
HemolysinCabind	PF00353.19	gi|408405971|ref|YP_006863955.1|	-	3.3e-30	103.7	94.4	7.3e-06	25.9	16.1	6.9	3	2	4	7	7	7	7	RTX	calcium-binding	nonapeptide	repeat	(4	copies)
Tubulin	PF00091.25	gi|408405972|ref|YP_006863956.1|	-	2.6e-32	112.7	0.3	4.4e-32	111.9	0.3	1.4	1	0	0	1	1	1	1	Tubulin/FtsZ	family,	GTPase	domain
FtsZ_C	PF12327.8	gi|408405972|ref|YP_006863956.1|	-	6.2e-27	93.7	0.8	1.6e-26	92.4	0.8	1.7	1	0	0	1	1	1	1	FtsZ	family,	C-terminal	domain
Tubulin_2	PF13809.6	gi|408405972|ref|YP_006863956.1|	-	0.00019	20.7	1.1	0.0048	16.1	0.0	2.2	2	0	0	2	2	2	2	Tubulin	like
EIIA-man	PF03610.16	gi|408405972|ref|YP_006863956.1|	-	0.041	14.1	0.0	0.13	12.5	0.0	1.8	1	0	0	1	1	1	0	PTS	system	fructose	IIA	component
ADD_DNMT3	PF17980.1	gi|408405973|ref|YP_006863957.1|	-	0.77	9.8	3.7	9.9	6.2	3.7	2.0	1	1	0	1	1	1	0	Cysteine	rich	ADD	domain	in	DNMT3
DUF4835	PF16119.5	gi|408405974|ref|YP_006863958.1|	-	0.0017	17.6	0.7	0.0018	17.5	0.7	1.3	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4835)
DUF4760	PF15956.5	gi|408405974|ref|YP_006863958.1|	-	0.0067	16.6	2.8	0.0085	16.2	2.8	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4760)
Hepar_II_III_N	PF16889.5	gi|408405974|ref|YP_006863958.1|	-	0.032	13.5	3.7	0.026	13.8	3.0	1.3	1	1	0	1	1	1	0	Heparinase	II/III	N-terminus
DUF4081	PF13312.6	gi|408405974|ref|YP_006863958.1|	-	0.058	13.6	0.0	0.16	12.1	0.0	1.7	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4081)
Phage_holin_2_3	PF16080.5	gi|408405974|ref|YP_006863958.1|	-	0.096	12.5	0.2	0.18	11.6	0.2	1.5	1	0	0	1	1	1	0	Bacteriophage	holin	family	HP1
Aminotran_4	PF01063.19	gi|408405975|ref|YP_006863959.1|	-	6.6e-49	166.8	0.0	7.8e-49	166.5	0.0	1.1	1	0	0	1	1	1	1	Amino-transferase	class	IV
AA_kinase	PF00696.28	gi|408405976|ref|YP_006863960.1|	-	4.8e-24	85.3	0.3	7.9e-24	84.6	0.3	1.4	1	0	0	1	1	1	1	Amino	acid	kinase	family
ACT	PF01842.25	gi|408405976|ref|YP_006863960.1|	-	0.031	14.1	0.4	0.08	12.7	0.4	1.7	1	0	0	1	1	1	0	ACT	domain
EFTUD2	PF16004.5	gi|408405976|ref|YP_006863960.1|	-	0.093	13.3	0.0	0.22	12.1	0.0	1.7	1	0	0	1	1	1	0	116	kDa	U5	small	nuclear	ribonucleoprotein	component	N-terminus
Band_7	PF01145.25	gi|408405977|ref|YP_006863961.1|	-	1.3e-33	116.5	2.6	2.3e-33	115.7	2.6	1.3	1	0	0	1	1	1	1	SPFH	domain	/	Band	7	family
Band_7_1	PF13421.6	gi|408405977|ref|YP_006863961.1|	-	3.7e-06	26.8	0.2	1e-05	25.4	0.0	1.8	2	0	0	2	2	2	1	SPFH	domain-Band	7	family
Phage_P2_GpE	PF06528.12	gi|408405977|ref|YP_006863961.1|	-	0.081	12.5	0.9	0.18	11.4	0.9	1.6	1	0	0	1	1	1	0	Phage	P2	GpE
SOP4	PF17081.5	gi|408405977|ref|YP_006863961.1|	-	0.13	11.7	0.0	0.19	11.3	0.0	1.2	1	0	0	1	1	1	0	Suppressor	of	PMA	1-7	protein
NfeD	PF01957.18	gi|408405978|ref|YP_006863962.1|	-	4.9e-12	46.1	0.4	1.5e-11	44.5	0.4	1.9	1	0	0	1	1	1	1	NfeD-like	C-terminal,	partner-binding
CLP_protease	PF00574.23	gi|408405978|ref|YP_006863962.1|	-	1e-07	32.0	0.3	1.5e-06	28.2	0.2	2.1	2	0	0	2	2	2	1	Clp	protease
SDH_sah	PF01972.16	gi|408405978|ref|YP_006863962.1|	-	0.0022	17.0	0.1	0.0034	16.4	0.1	1.2	1	0	0	1	1	1	1	Serine	dehydrogenase	proteinase
DUF3090	PF11290.8	gi|408405979|ref|YP_006863963.1|	-	0.03	14.1	0.1	0.5	10.1	0.1	2.0	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF3090)
Acyltransf_C	PF16076.5	gi|408405979|ref|YP_006863963.1|	-	0.068	13.3	0.5	1.3	9.2	0.1	2.4	1	1	1	2	2	2	0	Acyltransferase	C-terminus
TA0956	PF11513.8	gi|408405979|ref|YP_006863963.1|	-	0.077	13.2	0.4	0.11	12.8	0.3	1.4	1	1	0	1	1	1	0	Thermoplasma	acidophilum	protein	TA0956
Glu-tRNAGln	PF02686.15	gi|408405979|ref|YP_006863963.1|	-	0.12	12.7	3.6	0.35	11.2	3.2	1.9	1	1	0	1	1	1	0	Glu-tRNAGln	amidotransferase	C	subunit
DUF389	PF04087.14	gi|408405981|ref|YP_006863965.1|	-	5.3e-28	97.8	19.3	5.3e-28	97.8	19.3	2.3	2	1	1	3	3	3	1	Domain	of	unknown	function	(DUF389)
DUF5409	PF17421.2	gi|408405981|ref|YP_006863965.1|	-	0.24	12.1	2.9	12	6.7	0.3	3.1	3	0	0	3	3	3	0	Family	of	unknown	function	(DUF5409)
PIN	PF01850.21	gi|408405982|ref|YP_006863966.1|	-	8.9e-17	61.7	0.3	9.8e-17	61.6	0.3	1.0	1	0	0	1	1	1	1	PIN	domain
PIN_12	PF16289.5	gi|408405982|ref|YP_006863966.1|	-	0.0013	19.2	0.1	0.0017	18.9	0.1	1.2	1	0	0	1	1	1	1	PIN	domain
DUF5112	PF17139.4	gi|408405982|ref|YP_006863966.1|	-	0.014	14.8	0.1	0.018	14.5	0.1	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF5112)
PIN_3	PF13470.6	gi|408405982|ref|YP_006863966.1|	-	0.059	14.1	0.2	0.088	13.6	0.2	1.3	1	1	0	1	1	1	0	PIN	domain
HemolysinCabind	PF00353.19	gi|408405983|ref|YP_006863967.1|	-	9.5e-34	115.0	90.2	2.6e-10	40.1	12.2	6.5	4	3	2	6	6	6	6	RTX	calcium-binding	nonapeptide	repeat	(4	copies)
Response_reg	PF00072.24	gi|408405984|ref|YP_006863968.1|	-	5.7e-19	68.3	0.1	6.9e-19	68.1	0.1	1.1	1	0	0	1	1	1	1	Response	regulator	receiver	domain
UPF0086	PF01868.16	gi|408405985|ref|YP_006863969.1|	-	0.067	13.1	0.3	6.9	6.7	0.0	2.2	2	0	0	2	2	2	0	Domain	of	unknown	function	UPF0086
Usp	PF00582.26	gi|408405986|ref|YP_006863970.1|	-	7.2e-28	97.9	2.9	1.9e-27	96.5	2.9	1.5	1	1	0	1	1	1	1	Universal	stress	protein	family
DXP_reductoisom	PF02670.16	gi|408405986|ref|YP_006863970.1|	-	0.019	15.7	0.4	0.033	14.9	0.4	1.4	1	0	0	1	1	1	0	1-deoxy-D-xylulose	5-phosphate	reductoisomerase
RuvX	PF03652.15	gi|408405986|ref|YP_006863970.1|	-	0.055	13.9	0.7	1.8	9.0	0.4	2.5	2	1	0	2	2	2	0	Holliday	junction	resolvase
DUF1216	PF06746.11	gi|408405986|ref|YP_006863970.1|	-	0.08	12.9	1.5	0.14	12.2	1.5	1.5	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF1216)
TerC	PF03741.16	gi|408405987|ref|YP_006863971.1|	-	5.9e-52	176.0	19.3	9.5e-52	175.3	15.9	2.6	3	0	0	3	3	3	1	Integral	membrane	protein	TerC	family
PHO4	PF01384.20	gi|408405987|ref|YP_006863971.1|	-	0.071	12.2	12.8	0.24	10.4	2.0	2.2	1	1	0	2	2	2	0	Phosphate	transporter	family
Glycophorin_A	PF01102.18	gi|408405987|ref|YP_006863971.1|	-	1.5	9.1	4.6	16	5.8	0.0	3.4	3	0	0	3	3	3	0	Glycophorin	A
SMC_ScpB	PF04079.16	gi|408405988|ref|YP_006863972.1|	-	0.28	10.8	1.6	0.64	9.6	1.6	1.6	1	1	0	1	1	1	0	Segregation	and	condensation	complex	subunit	ScpB
DUF2130	PF09903.9	gi|408405989|ref|YP_006863973.1|	-	4.1e-06	26.3	1.9	1.1e-05	24.8	1.9	1.7	1	1	0	1	1	1	1	Uncharacterized	protein	conserved	in	bacteria	(DUF2130)
EF-hand_7	PF13499.6	gi|408405989|ref|YP_006863973.1|	-	0.059	13.8	0.1	0.1	13.1	0.1	1.3	1	0	0	1	1	1	0	EF-hand	domain	pair
Rad17	PF03215.15	gi|408405989|ref|YP_006863973.1|	-	0.063	13.2	0.1	0.094	12.6	0.1	1.2	1	0	0	1	1	1	0	Rad17	P-loop	domain
Phage_gp53	PF11246.8	gi|408405989|ref|YP_006863973.1|	-	0.074	12.7	0.0	0.12	12.1	0.0	1.3	1	0	0	1	1	1	0	Base	plate	wedge	protein	53
SMC_N	PF02463.19	gi|408405991|ref|YP_006863975.1|	-	3.8e-23	82.1	3.4	2.4e-11	43.5	0.1	2.6	2	1	0	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
AAA_15	PF13175.6	gi|408405991|ref|YP_006863975.1|	-	1.8e-18	67.4	0.7	7.6e-09	35.7	0.1	2.6	2	1	1	3	3	3	2	AAA	ATPase	domain
AAA_23	PF13476.6	gi|408405991|ref|YP_006863975.1|	-	2.9e-16	60.6	27.2	7.8e-12	46.1	27.2	3.6	1	1	0	1	1	1	1	AAA	domain
AAA_21	PF13304.6	gi|408405991|ref|YP_006863975.1|	-	3.8e-14	53.2	0.1	1.9e-07	31.2	0.0	2.6	2	0	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_29	PF13555.6	gi|408405991|ref|YP_006863975.1|	-	1.1e-08	34.7	0.1	2e-08	33.9	0.1	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
SbcCD_C	PF13558.6	gi|408405991|ref|YP_006863975.1|	-	5.6e-08	32.9	0.0	1.9e-07	31.2	0.0	1.9	1	0	0	1	1	1	1	Putative	exonuclease	SbcCD,	C	subunit
AAA_27	PF13514.6	gi|408405991|ref|YP_006863975.1|	-	6.3e-05	22.7	0.1	6.3e-05	22.7	0.1	3.3	4	1	1	5	5	5	1	AAA	domain
ABC_tran	PF00005.27	gi|408405991|ref|YP_006863975.1|	-	6.4e-05	23.5	4.7	0.16	12.5	0.0	3.8	2	1	0	2	2	2	2	ABC	transporter
AAA_13	PF13166.6	gi|408405991|ref|YP_006863975.1|	-	0.00046	19.0	24.6	0.00062	18.5	4.8	3.8	2	1	0	3	3	3	1	AAA	domain
zf-C3HC4_3	PF13920.6	gi|408405991|ref|YP_006863975.1|	-	0.027	14.3	0.3	0.043	13.7	0.3	1.3	1	0	0	1	1	1	0	Zinc	finger,	C3HC4	type	(RING	finger)
RsgA_GTPase	PF03193.16	gi|408405991|ref|YP_006863975.1|	-	0.031	14.2	3.1	0.32	10.9	0.0	2.7	2	0	0	2	2	2	0	RsgA	GTPase
DNA_ligase_ZBD	PF03119.16	gi|408405991|ref|YP_006863975.1|	-	0.086	12.9	0.1	0.24	11.5	0.1	1.8	1	0	0	1	1	1	0	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
MukB	PF04310.12	gi|408405991|ref|YP_006863975.1|	-	0.11	12.2	0.1	0.11	12.2	0.1	3.0	3	1	0	4	4	4	0	MukB	N-terminal
AAA_16	PF13191.6	gi|408405991|ref|YP_006863975.1|	-	0.24	11.7	0.0	0.24	11.7	0.0	3.5	3	1	0	3	3	3	0	AAA	ATPase	domain
ATG16	PF08614.11	gi|408405991|ref|YP_006863975.1|	-	1.7	8.9	34.7	0.25	11.5	8.9	4.2	2	2	1	3	3	3	0	Autophagy	protein	16	(ATG16)
ERM	PF00769.19	gi|408405991|ref|YP_006863975.1|	-	9.4	6.0	34.0	5.7	6.7	4.8	3.2	3	0	0	3	3	3	0	Ezrin/radixin/moesin	family
Metallophos_2	PF12850.7	gi|408405992|ref|YP_006863976.1|	-	5.1e-08	33.3	0.1	8.4e-08	32.6	0.1	1.3	1	0	0	1	1	1	1	Calcineurin-like	phosphoesterase	superfamily	domain
Metallophos	PF00149.28	gi|408405992|ref|YP_006863976.1|	-	3.2e-07	31.1	0.1	5.8e-07	30.2	0.1	1.5	1	1	0	1	1	1	1	Calcineurin-like	phosphoesterase
MG2	PF01835.19	gi|408405996|ref|YP_006863980.1|	-	2e-05	24.9	0.0	3.8e-05	24.1	0.0	1.5	1	0	0	1	1	1	1	MG2	domain
FlgD_ig	PF13860.6	gi|408405996|ref|YP_006863980.1|	-	0.0022	17.8	0.0	0.0051	16.7	0.0	1.6	1	0	0	1	1	1	1	FlgD	Ig-like	domain
EMP24_GP25L	PF01105.24	gi|408405996|ref|YP_006863980.1|	-	0.016	15.2	0.1	0.56	10.1	0.0	2.7	2	1	0	2	2	2	0	emp24/gp25L/p24	family/GOLD
Big_3_5	PF16640.5	gi|408405996|ref|YP_006863980.1|	-	0.016	15.4	1.2	0.016	15.4	1.2	2.3	2	1	0	2	2	2	0	Bacterial	Ig-like	domain	(group	3)
Big_9	PF17963.1	gi|408405996|ref|YP_006863980.1|	-	5.1	7.9	9.4	15	6.4	0.7	2.9	1	1	0	2	2	2	0	Bacterial	Ig	domain
DUF87	PF01935.17	gi|408405998|ref|YP_006863982.1|	-	2.6e-38	132.4	0.6	4.2e-38	131.7	0.6	1.3	1	0	0	1	1	1	1	Helicase	HerA,	central	domain
DUF853	PF05872.12	gi|408405998|ref|YP_006863982.1|	-	4.2e-05	22.3	0.2	0.054	12.1	0.0	2.2	2	0	0	2	2	2	2	Bacterial	protein	of	unknown	function	(DUF853)
AAA_16	PF13191.6	gi|408405998|ref|YP_006863982.1|	-	0.0056	17.1	0.1	0.021	15.2	0.0	2.1	2	1	0	2	2	2	1	AAA	ATPase	domain
HAS-barrel	PF09378.10	gi|408405998|ref|YP_006863982.1|	-	0.0059	16.7	0.1	0.017	15.3	0.1	1.8	1	0	0	1	1	1	1	HAS	barrel	domain
ABC_tran	PF00005.27	gi|408405998|ref|YP_006863982.1|	-	0.08	13.5	0.0	0.15	12.6	0.0	1.5	1	0	0	1	1	1	0	ABC	transporter
NurA	PF09376.10	gi|408405999|ref|YP_006863983.1|	-	1.6e-10	41.1	0.6	4.7e-09	36.3	0.6	2.2	1	1	0	1	1	1	1	NurA	domain
OrfB_Zn_ribbon	PF07282.11	gi|408406000|ref|YP_006863984.1|	-	2.1e-10	40.3	0.5	3.7e-10	39.6	0.5	1.4	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
Zn_Tnp_IS1595	PF12760.7	gi|408406000|ref|YP_006863984.1|	-	0.074	13.0	3.7	0.16	12.0	3.7	1.6	1	0	0	1	1	1	0	Transposase	zinc-ribbon	domain
zf_UBZ	PF18439.1	gi|408406000|ref|YP_006863984.1|	-	0.18	11.5	0.1	0.18	11.5	0.1	1.8	2	0	0	2	2	2	0	Ubiquitin-Binding	Zinc	Finger
DUF2757	PF10955.8	gi|408406000|ref|YP_006863984.1|	-	1.3	9.3	5.0	12	6.3	0.1	2.9	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF2757)
DAO	PF01266.24	gi|408406002|ref|YP_006863986.1|	-	3.2e-47	161.8	0.0	4e-47	161.5	0.0	1.1	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
Mqo	PF06039.15	gi|408406002|ref|YP_006863986.1|	-	4.9e-11	41.9	0.0	6.1e-08	31.6	0.0	2.2	2	0	0	2	2	2	2	Malate:quinone	oxidoreductase	(Mqo)
Pyr_redox_2	PF07992.14	gi|408406002|ref|YP_006863986.1|	-	1.4e-05	24.5	0.1	0.0002	20.7	0.1	2.1	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_binding_9	PF13454.6	gi|408406002|ref|YP_006863986.1|	-	9.5e-05	22.4	0.1	0.045	13.7	0.1	2.6	2	0	0	2	2	2	2	FAD-NAD(P)-binding
HI0933_like	PF03486.14	gi|408406002|ref|YP_006863986.1|	-	0.0001	21.2	0.2	0.0033	16.2	0.0	2.2	2	0	0	2	2	2	1	HI0933-like	protein
FAD_binding_3	PF01494.19	gi|408406002|ref|YP_006863986.1|	-	0.00033	20.0	0.1	0.23	10.7	0.0	2.4	2	0	0	2	2	2	2	FAD	binding	domain
NAD_binding_8	PF13450.6	gi|408406002|ref|YP_006863986.1|	-	0.00076	19.7	0.0	0.0028	17.9	0.0	2.0	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
Pyr_redox	PF00070.27	gi|408406002|ref|YP_006863986.1|	-	0.0019	18.7	0.0	0.045	14.3	0.0	2.6	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
Amino_oxidase	PF01593.24	gi|408406002|ref|YP_006863986.1|	-	0.038	13.3	0.0	0.059	12.7	0.0	1.3	1	0	0	1	1	1	0	Flavin	containing	amine	oxidoreductase
NAD_Gly3P_dh_N	PF01210.23	gi|408406002|ref|YP_006863986.1|	-	0.042	13.8	0.0	0.073	13.0	0.0	1.4	1	0	0	1	1	1	0	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
3HCDH_N	PF02737.18	gi|408406002|ref|YP_006863986.1|	-	0.084	12.7	0.0	0.16	11.9	0.0	1.4	1	0	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
Trp_halogenase	PF04820.14	gi|408406002|ref|YP_006863986.1|	-	0.091	11.6	0.2	3	6.6	0.1	2.1	2	0	0	2	2	2	0	Tryptophan	halogenase
DUF1326	PF07040.11	gi|408406003|ref|YP_006863987.1|	-	5.2e-52	176.4	0.0	6e-52	176.2	0.0	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1326)
OrfB_IS605	PF01385.19	gi|408406005|ref|YP_006863989.1|	-	1.4e-20	73.7	1.2	3e-20	72.6	1.2	1.5	1	0	0	1	1	1	1	Probable	transposase
OrfB_Zn_ribbon	PF07282.11	gi|408406005|ref|YP_006863989.1|	-	1.6e-16	60.0	1.8	3.2e-16	59.0	1.8	1.5	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
HTH_OrfB_IS605	PF12323.8	gi|408406005|ref|YP_006863989.1|	-	1.1e-11	44.0	0.2	3.4e-11	42.4	0.2	1.9	1	0	0	1	1	1	1	Helix-turn-helix	domain
Peptidase_M24_C	PF16188.5	gi|408406005|ref|YP_006863989.1|	-	0.08	13.0	0.1	0.26	11.4	0.1	1.9	1	0	0	1	1	1	0	C-terminal	region	of	peptidase_M24
HypA	PF01155.19	gi|408406005|ref|YP_006863989.1|	-	0.084	12.9	0.0	0.19	11.8	0.0	1.5	1	0	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
C1_2	PF03107.16	gi|408406005|ref|YP_006863989.1|	-	0.1	12.9	0.2	0.25	11.7	0.2	1.6	1	0	0	1	1	1	0	C1	domain
DUF3786	PF12654.7	gi|408406005|ref|YP_006863989.1|	-	0.11	12.0	0.0	0.2	11.2	0.0	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3786)
GFRP	PF06399.13	gi|408406005|ref|YP_006863989.1|	-	0.12	12.3	0.0	0.3	11.0	0.0	1.6	1	0	0	1	1	1	0	GTP	cyclohydrolase	I	feedback	regulatory	protein	(GFRP)
DNA_pol_B	PF00136.21	gi|408406006|ref|YP_006863990.1|	-	8.1e-43	146.8	1.0	5.1e-32	111.2	0.0	2.9	2	1	0	2	2	2	2	DNA	polymerase	family	B
DNA_pol_B_exo1	PF03104.19	gi|408406006|ref|YP_006863990.1|	-	1e-26	93.9	3.8	1.9e-24	86.4	0.1	3.1	3	0	0	3	3	3	2	DNA	polymerase	family	B,	exonuclease	domain
Intein_splicing	PF14890.6	gi|408406006|ref|YP_006863990.1|	-	1.7e-13	50.7	0.0	1.8e-08	34.4	0.1	2.7	2	1	0	2	2	2	2	Intein	splicing	domain
Hom_end	PF05204.14	gi|408406006|ref|YP_006863990.1|	-	9e-12	45.1	0.1	3e-07	30.6	0.1	2.7	2	0	0	2	2	2	2	Homing	endonuclease
LAGLIDADG_3	PF14528.6	gi|408406006|ref|YP_006863990.1|	-	1.8e-11	44.2	4.7	0.004	17.4	0.0	5.4	5	1	0	5	5	5	2	LAGLIDADG-like	domain
DNA_pol_B_exo2	PF10108.9	gi|408406006|ref|YP_006863990.1|	-	9e-05	22.2	0.0	0.00023	20.9	0.0	1.6	1	0	0	1	1	1	1	Predicted	3'-5'	exonuclease	related	to	the	exonuclease	domain	of	PolB
RNase_H_2	PF13482.6	gi|408406006|ref|YP_006863990.1|	-	0.00018	21.5	0.1	0.0041	17.1	0.0	2.8	2	0	0	2	2	2	1	RNase_H	superfamily
DNA_pol_A_exo1	PF01612.20	gi|408406006|ref|YP_006863990.1|	-	0.014	15.2	0.0	0.048	13.4	0.0	2.0	1	0	0	1	1	1	0	3'-5'	exonuclease
Radical_SAM	PF04055.21	gi|408406007|ref|YP_006863991.1|	-	8e-13	49.1	0.1	1.6e-12	48.1	0.1	1.5	1	0	0	1	1	1	1	Radical	SAM	superfamily
Arginase	PF00491.21	gi|408406008|ref|YP_006863992.1|	-	2.7e-58	197.7	0.0	3.1e-58	197.5	0.0	1.0	1	0	0	1	1	1	1	Arginase	family
Pox_VP8_L4R	PF04498.12	gi|408406008|ref|YP_006863992.1|	-	0.0047	16.6	0.0	0.0079	15.8	0.0	1.3	1	0	0	1	1	1	1	Poxvirus	nucleic	acid	binding	protein	VP8/L4R
Neur_chan_memb	PF02932.16	gi|408406009|ref|YP_006863993.1|	-	4.8e-06	26.8	3.1	6e-06	26.5	3.1	1.1	1	0	0	1	1	1	1	Neurotransmitter-gated	ion-channel	transmembrane	region
DDE_Tnp_1	PF01609.21	gi|408406010|ref|YP_006863994.1|	-	0.0002	21.1	0.0	0.00041	20.0	0.0	1.6	1	1	0	1	1	1	1	Transposase	DDE	domain
DUF1815	PF08844.10	gi|408406010|ref|YP_006863994.1|	-	0.17	11.9	0.2	0.87	9.6	0.1	2.0	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF1815)
Neur_chan_LBD	PF02931.23	gi|408406011|ref|YP_006863995.1|	-	0.15	11.5	0.0	0.26	10.7	0.0	1.5	1	1	0	1	1	1	0	Neurotransmitter-gated	ion-channel	ligand	binding	domain
tRNA-Thr_ED	PF08915.11	gi|408406012|ref|YP_006863996.1|	-	2.2e-42	144.3	0.0	4.4e-42	143.4	0.0	1.5	1	0	0	1	1	1	1	Archaea-specific	editing	domain	of	threonyl-tRNA	synthetase
HGTP_anticodon	PF03129.20	gi|408406012|ref|YP_006863996.1|	-	1.3e-27	95.7	2.8	3.5e-27	94.4	2.8	1.8	1	0	0	1	1	1	1	Anticodon	binding	domain
tRNA-synt_2b	PF00587.25	gi|408406012|ref|YP_006863996.1|	-	8.6e-18	64.9	0.1	2.4e-17	63.5	0.1	1.8	1	0	0	1	1	1	1	tRNA	synthetase	class	II	core	domain	(G,	H,	P,	S	and	T)
HGTP_anticodon2	PF12745.7	gi|408406012|ref|YP_006863996.1|	-	0.004	16.7	0.2	0.0078	15.8	0.2	1.4	1	0	0	1	1	1	1	Anticodon	binding	domain	of	tRNAs
UPF0270	PF06794.12	gi|408406012|ref|YP_006863996.1|	-	0.012	15.6	0.6	1.9	8.6	0.0	3.5	3	0	0	3	3	3	0	Uncharacterised	protein	family	(UPF0270)
THAP	PF05485.12	gi|408406013|ref|YP_006863997.1|	-	0.077	13.9	0.3	0.93	10.5	0.3	2.0	1	1	0	1	1	1	0	THAP	domain
HTH_45	PF14947.6	gi|408406014|ref|YP_006863998.1|	-	1.3e-13	50.7	0.4	2.8e-13	49.6	0.4	1.5	1	1	0	1	1	1	1	Winged	helix-turn-helix
DUF4364	PF14277.6	gi|408406014|ref|YP_006863998.1|	-	0.016	14.9	0.1	0.026	14.3	0.1	1.3	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4364)
TrmB	PF01978.19	gi|408406014|ref|YP_006863998.1|	-	0.029	14.3	0.1	0.044	13.7	0.1	1.3	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
DUF1266	PF06889.11	gi|408406014|ref|YP_006863998.1|	-	0.067	13.2	0.0	0.08	13.0	0.0	1.3	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF1266)
HTH_27	PF13463.6	gi|408406014|ref|YP_006863998.1|	-	0.076	13.5	0.0	0.09	13.3	0.0	1.2	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
MarR_2	PF12802.7	gi|408406014|ref|YP_006863998.1|	-	0.12	12.3	0.0	0.16	11.9	0.0	1.3	1	1	0	1	1	1	0	MarR	family
zinc_ribbon_6	PF14599.6	gi|408406016|ref|YP_006864000.1|	-	0.013	15.5	1.0	0.016	15.2	1.0	1.2	1	0	0	1	1	1	0	Zinc-ribbon
zinc_ribbon_4	PF13717.6	gi|408406016|ref|YP_006864000.1|	-	0.02	14.8	3.9	0.53	10.2	3.9	2.1	1	1	0	1	1	1	0	zinc-ribbon	domain
IBR	PF01485.21	gi|408406016|ref|YP_006864000.1|	-	0.024	14.9	0.7	0.032	14.4	0.7	1.2	1	0	0	1	1	1	0	IBR	domain,	a	half	RING-finger	domain
Ribosomal_S27e	PF01667.17	gi|408406016|ref|YP_006864000.1|	-	0.066	12.9	3.5	0.16	11.7	3.5	1.6	1	1	0	1	1	1	0	Ribosomal	protein	S27
zinc_ribbon_5	PF13719.6	gi|408406016|ref|YP_006864000.1|	-	0.077	12.8	4.4	0.24	11.2	4.4	1.7	1	1	0	1	1	1	0	zinc-ribbon	domain
HypA	PF01155.19	gi|408406016|ref|YP_006864000.1|	-	0.13	12.3	0.3	0.14	12.2	0.3	1.1	1	0	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
Laminin_EGF	PF00053.24	gi|408406017|ref|YP_006864001.1|	-	0.023	14.8	2.0	0.033	14.3	2.0	1.2	1	0	0	1	1	1	0	Laminin	EGF	domain
DUF3042	PF11240.8	gi|408406017|ref|YP_006864001.1|	-	0.039	14.0	1.6	0.054	13.5	1.0	1.5	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF3042)
zf-NADH-PPase	PF09297.11	gi|408406017|ref|YP_006864001.1|	-	0.042	13.5	2.1	1.7	8.4	0.7	2.2	2	0	0	2	2	2	0	NADH	pyrophosphatase	zinc	ribbon	domain
Zn_ribbon_SprT	PF17283.2	gi|408406017|ref|YP_006864001.1|	-	0.22	11.4	4.8	5.2	7.1	4.9	2.2	1	1	0	1	1	1	0	SprT-like	zinc	ribbon	domain
SKG6	PF08693.10	gi|408406017|ref|YP_006864001.1|	-	2.3	7.7	6.9	1.5	8.3	1.0	2.1	2	0	0	2	2	2	0	Transmembrane	alpha-helix	domain
Iron_traffic	PF04362.14	gi|408406018|ref|YP_006864002.1|	-	1.6e-07	30.9	0.0	2.5e-07	30.3	0.0	1.3	1	0	0	1	1	1	1	Bacterial	Fe(2+)	trafficking
OrfB_Zn_ribbon	PF07282.11	gi|408406018|ref|YP_006864002.1|	-	0.0078	16.1	0.1	0.011	15.7	0.1	1.3	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
YhfH	PF14149.6	gi|408406018|ref|YP_006864002.1|	-	0.0085	16.0	0.8	0.0085	16.0	0.8	1.8	2	0	0	2	2	2	1	YhfH-like	protein
SR1P	PF13790.6	gi|408406018|ref|YP_006864002.1|	-	0.077	13.1	0.6	0.11	12.6	0.6	1.2	1	0	0	1	1	1	0	SR1	protein
Salt_tol_Pase	PF09506.10	gi|408406019|ref|YP_006864003.1|	-	0.11	11.3	0.2	0.13	11.0	0.2	1.0	1	0	0	1	1	1	0	Glucosylglycerol-phosphate	phosphatase	(Salt_tol_Pase)
DUF5078	PF16877.5	gi|408406019|ref|YP_006864003.1|	-	0.11	13.0	0.2	5.7	7.4	0.0	2.3	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF5078)
Adenylsucc_synt	PF00709.21	gi|408406020|ref|YP_006864004.1|	-	6.9e-81	272.3	0.2	1.7e-39	135.9	0.0	3.0	1	1	2	3	3	3	3	Adenylosuccinate	synthetase
Arg_decarbox_C	PF17944.1	gi|408406021|ref|YP_006864005.1|	-	0.1	13.1	0.2	38	4.9	0.0	3.1	1	1	2	3	3	3	0	Arginine	decarboxylase	C-terminal	helical	extension
OMPdecase	PF00215.24	gi|408406023|ref|YP_006864007.1|	-	1.9e-27	96.3	0.1	2.5e-27	95.9	0.1	1.1	1	0	0	1	1	1	1	Orotidine	5'-phosphate	decarboxylase	/	HUMPS	family
FMN_dh	PF01070.18	gi|408406023|ref|YP_006864007.1|	-	0.011	14.8	2.0	0.52	9.3	1.3	2.7	2	1	0	2	2	2	0	FMN-dependent	dehydrogenase
Peripla_BP_4	PF13407.6	gi|408406023|ref|YP_006864007.1|	-	0.03	13.9	2.8	1.5	8.3	0.1	2.9	3	0	0	3	3	3	0	Periplasmic	binding	protein	domain
NUDIX	PF00293.28	gi|408406024|ref|YP_006864008.1|	-	6.5e-18	65.0	0.1	8e-18	64.8	0.1	1.1	1	0	0	1	1	1	1	NUDIX	domain
Imm74	PF15603.6	gi|408406024|ref|YP_006864008.1|	-	0.035	14.3	0.0	0.071	13.3	0.0	1.5	1	0	0	1	1	1	0	Immunity	protein	74
NUDIX_4	PF14815.6	gi|408406024|ref|YP_006864008.1|	-	0.045	13.7	0.1	0.059	13.3	0.1	1.3	1	0	0	1	1	1	0	NUDIX	domain
DUF373	PF04123.13	gi|408406025|ref|YP_006864009.1|	-	1.8e-93	313.7	9.7	2.1e-93	313.4	9.7	1.0	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF373)
Mntp	PF02659.15	gi|408406025|ref|YP_006864009.1|	-	1.1	9.0	11.7	1	9.1	9.2	2.1	1	1	1	2	2	2	0	Putative	manganese	efflux	pump
FtsJ	PF01728.19	gi|408406026|ref|YP_006864010.1|	-	5.6e-56	189.4	0.0	6.4e-56	189.3	0.0	1.0	1	0	0	1	1	1	1	FtsJ-like	methyltransferase
Methyltransf_31	PF13847.6	gi|408406026|ref|YP_006864010.1|	-	4.9e-06	26.4	0.1	6.4e-05	22.8	0.0	2.2	2	0	0	2	2	2	1	Methyltransferase	domain
Methyltransf_23	PF13489.6	gi|408406026|ref|YP_006864010.1|	-	8.9e-05	22.4	0.0	0.00025	21.0	0.0	2.0	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.6	gi|408406026|ref|YP_006864010.1|	-	0.00069	20.3	0.2	0.0038	17.9	0.1	2.2	2	1	0	2	2	2	1	Methyltransferase	domain
PCMT	PF01135.19	gi|408406026|ref|YP_006864010.1|	-	0.021	14.6	0.0	0.031	14.0	0.0	1.2	1	0	0	1	1	1	0	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
MetW	PF07021.12	gi|408406026|ref|YP_006864010.1|	-	0.041	13.5	0.0	0.073	12.7	0.0	1.4	1	0	0	1	1	1	0	Methionine	biosynthesis	protein	MetW
Ubie_methyltran	PF01209.18	gi|408406026|ref|YP_006864010.1|	-	0.052	12.9	0.0	0.1	11.9	0.0	1.4	1	0	0	1	1	1	0	ubiE/COQ5	methyltransferase	family
PrmA	PF06325.13	gi|408406026|ref|YP_006864010.1|	-	0.18	11.2	0.2	0.23	10.8	0.2	1.2	1	0	0	1	1	1	0	Ribosomal	protein	L11	methyltransferase	(PrmA)
RNA_pol_Rpc34	PF05158.12	gi|408406027|ref|YP_006864011.1|	-	4.3e-05	23.1	0.6	0.001	18.5	0.1	2.0	1	1	1	2	2	2	2	RNA	polymerase	Rpc34	subunit
MarR	PF01047.22	gi|408406027|ref|YP_006864011.1|	-	0.01	15.7	0.3	0.017	15.0	0.3	1.4	1	0	0	1	1	1	0	MarR	family
B-block_TFIIIC	PF04182.12	gi|408406027|ref|YP_006864011.1|	-	0.02	15.0	0.1	0.024	14.8	0.1	1.3	1	1	0	1	1	1	0	B-block	binding	subunit	of	TFIIIC
HpaB_N	PF11794.8	gi|408406028|ref|YP_006864012.1|	-	8.2e-94	314.3	0.0	1.4e-92	310.2	0.0	2.0	2	0	0	2	2	2	1	4-hydroxyphenylacetate	3-hydroxylase	N	terminal
HpaB	PF03241.13	gi|408406028|ref|YP_006864012.1|	-	1.1e-73	246.6	0.8	1.6e-73	246.1	0.8	1.2	1	0	0	1	1	1	1	4-hydroxyphenylacetate	3-hydroxylase	C	terminal
zf-Tim10_DDP	PF02953.15	gi|408406028|ref|YP_006864012.1|	-	0.14	11.8	0.1	0.33	10.6	0.1	1.6	1	0	0	1	1	1	0	Tim10/DDP	family	zinc	finger
DUF2096	PF09869.9	gi|408406028|ref|YP_006864012.1|	-	0.19	11.8	1.2	6.6	6.8	0.2	2.9	3	0	0	3	3	3	0	Uncharacterized	protein	conserved	in	archaea	(DUF2096)
Peptidase_M10	PF00413.24	gi|408406029|ref|YP_006864013.1|	-	0.11	12.4	0.6	0.26	11.1	0.5	1.8	1	1	0	1	1	1	0	Matrixin
Pribosyltran	PF00156.27	gi|408406030|ref|YP_006864014.1|	-	5.4e-17	61.8	0.2	6.8e-17	61.4	0.2	1.1	1	0	0	1	1	1	1	Phosphoribosyl	transferase	domain
UPRTase	PF14681.6	gi|408406030|ref|YP_006864014.1|	-	0.00042	19.8	0.0	0.00055	19.4	0.0	1.1	1	0	0	1	1	1	1	Uracil	phosphoribosyltransferase
PNP_UDP_1	PF01048.20	gi|408406031|ref|YP_006864015.1|	-	9.9e-47	159.1	0.0	1.1e-46	159.0	0.0	1.0	1	0	0	1	1	1	1	Phosphorylase	superfamily
DUF2977	PF11192.8	gi|408406031|ref|YP_006864015.1|	-	0.094	12.9	0.0	0.19	11.9	0.0	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2977)
TrmB	PF01978.19	gi|408406034|ref|YP_006864018.1|	-	2.5e-06	27.3	0.0	3.7e-06	26.7	0.0	1.3	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
PCB_OB	PF17092.5	gi|408406034|ref|YP_006864018.1|	-	0.069	13.9	0.1	0.087	13.6	0.1	1.1	1	0	0	1	1	1	0	Penicillin-binding	protein	OB-like	domain
DUF1495	PF07381.11	gi|408406034|ref|YP_006864018.1|	-	0.12	12.2	0.0	0.15	11.9	0.0	1.2	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain	(DUF1495)
Ferritin	PF00210.24	gi|408406035|ref|YP_006864019.1|	-	8.1e-25	87.4	0.5	9.4e-25	87.2	0.5	1.0	1	0	0	1	1	1	1	Ferritin-like	domain
PspA_IM30	PF04012.12	gi|408406035|ref|YP_006864019.1|	-	0.037	13.6	0.6	0.037	13.6	0.6	1.5	2	0	0	2	2	2	0	PspA/IM30	family
PfkB	PF00294.24	gi|408406036|ref|YP_006864020.1|	-	2e-27	96.3	0.1	3.2e-27	95.6	0.1	1.2	1	0	0	1	1	1	1	pfkB	family	carbohydrate	kinase
Rrp44_CSD1	PF17216.3	gi|408406036|ref|YP_006864020.1|	-	0.031	14.0	0.0	0.057	13.1	0.0	1.4	1	0	0	1	1	1	0	Rrp44-like	cold	shock	domain
Flavoprotein	PF02441.19	gi|408406037|ref|YP_006864021.1|	-	2.7e-27	95.5	0.1	3.3e-27	95.2	0.1	1.1	1	0	0	1	1	1	1	Flavoprotein
PHA-1	PF06542.11	gi|408406037|ref|YP_006864021.1|	-	0.087	11.6	0.0	0.11	11.3	0.0	1.1	1	0	0	1	1	1	0	Regulator	protein	PHA-1
ArsA_HSP20	PF17886.1	gi|408406038|ref|YP_006864022.1|	-	6.3e-05	22.4	0.0	0.00011	21.7	0.0	1.4	1	1	0	1	1	1	1	HSP20-like	domain	found	in	ArsA
AHJR-like	PF18743.1	gi|408406038|ref|YP_006864022.1|	-	0.05	13.1	0.0	0.067	12.7	0.0	1.2	1	0	0	1	1	1	0	REase_AHJR-like
KH_1	PF00013.29	gi|408406039|ref|YP_006864023.1|	-	3.4e-14	52.4	6.8	1e-09	38.1	1.7	2.3	2	0	0	2	2	2	2	KH	domain
KH_2	PF07650.17	gi|408406039|ref|YP_006864023.1|	-	0.00022	21.0	6.4	0.01	15.7	0.6	2.3	2	0	0	2	2	2	2	KH	domain
APC_u14	PF16635.5	gi|408406039|ref|YP_006864023.1|	-	0.18	12.4	0.4	2.2	8.9	0.0	2.1	2	0	0	2	2	2	0	Unstructured	region	on	APC	between	SAMP	and	APC_crr
KH_5	PF13184.6	gi|408406039|ref|YP_006864023.1|	-	0.57	10.3	3.2	2.2	8.4	0.4	2.5	2	0	0	2	2	2	0	NusA-like	KH	domain
RIO1	PF01163.22	gi|408406040|ref|YP_006864024.1|	-	4.6e-57	192.7	0.0	6.2e-57	192.2	0.0	1.1	1	0	0	1	1	1	1	RIO1	family
Pkinase	PF00069.25	gi|408406040|ref|YP_006864024.1|	-	2.6e-05	23.7	0.0	4.3e-05	23.0	0.0	1.3	1	0	0	1	1	1	1	Protein	kinase	domain
APH	PF01636.23	gi|408406040|ref|YP_006864024.1|	-	0.00067	19.6	0.6	1.9	8.3	0.0	3.1	2	1	1	3	3	3	2	Phosphotransferase	enzyme	family
Pkinase_fungal	PF17667.1	gi|408406040|ref|YP_006864024.1|	-	0.0024	16.7	0.0	0.0066	15.3	0.0	1.6	2	0	0	2	2	2	1	Fungal	protein	kinase
Kdo	PF06293.14	gi|408406040|ref|YP_006864024.1|	-	0.013	14.8	0.0	0.34	10.2	0.0	2.2	2	0	0	2	2	2	0	Lipopolysaccharide	kinase	(Kdo/WaaP)	family
DUF285	PF03382.14	gi|408406040|ref|YP_006864024.1|	-	0.14	11.9	0.1	0.52	10.1	0.1	1.8	2	0	0	2	2	2	0	Mycoplasma	protein	of	unknown	function,	DUF285
DUF424	PF04242.13	gi|408406041|ref|YP_006864025.1|	-	2.3e-17	63.1	0.2	2.5e-17	62.9	0.2	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF424)
DUF1874	PF08960.10	gi|408406041|ref|YP_006864025.1|	-	0.0012	19.0	0.1	0.0016	18.5	0.1	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1874)
NAD_binding_1	PF00175.21	gi|408406042|ref|YP_006864026.1|	-	6.2e-15	55.8	0.0	1e-14	55.1	0.0	1.4	1	0	0	1	1	1	1	Oxidoreductase	NAD-binding	domain
FAD_binding_6	PF00970.24	gi|408406042|ref|YP_006864026.1|	-	9.6e-11	41.9	0.0	1.8e-10	41.0	0.0	1.4	1	0	0	1	1	1	1	Oxidoreductase	FAD-binding	domain
NAD_binding_6	PF08030.12	gi|408406042|ref|YP_006864026.1|	-	0.024	14.7	0.0	0.039	14.1	0.0	1.4	1	0	0	1	1	1	0	Ferric	reductase	NAD	binding	domain
TssO	PF17561.2	gi|408406043|ref|YP_006864027.1|	-	0.054	13.6	0.1	0.083	13.0	0.1	1.3	1	0	0	1	1	1	0	Type	VI	secretion	system,	TssO
TRM	PF02005.16	gi|408406044|ref|YP_006864028.1|	-	1.8e-91	307.2	0.0	2e-91	307.0	0.0	1.0	1	0	0	1	1	1	1	N2,N2-dimethylguanosine	tRNA	methyltransferase
MarR_2	PF12802.7	gi|408406044|ref|YP_006864028.1|	-	0.00011	22.0	0.0	0.00026	20.8	0.0	1.6	1	0	0	1	1	1	1	MarR	family
Met_10	PF02475.16	gi|408406044|ref|YP_006864028.1|	-	0.00031	20.6	0.0	0.00053	19.8	0.0	1.4	1	0	0	1	1	1	1	Met-10+	like-protein
PrmA	PF06325.13	gi|408406044|ref|YP_006864028.1|	-	0.00073	19.0	0.0	0.0012	18.3	0.0	1.3	1	0	0	1	1	1	1	Ribosomal	protein	L11	methyltransferase	(PrmA)
Methyltransf_31	PF13847.6	gi|408406044|ref|YP_006864028.1|	-	0.002	17.9	0.0	0.0036	17.1	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
HypA	PF01155.19	gi|408406044|ref|YP_006864028.1|	-	0.0075	16.3	0.1	0.018	15.1	0.1	1.6	1	0	0	1	1	1	1	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
Rrf2	PF02082.20	gi|408406044|ref|YP_006864028.1|	-	0.0081	16.5	0.0	0.025	14.9	0.0	1.9	1	0	0	1	1	1	1	Transcriptional	regulator
MTS	PF05175.14	gi|408406044|ref|YP_006864028.1|	-	0.013	15.1	0.0	0.027	14.0	0.0	1.5	1	0	0	1	1	1	0	Methyltransferase	small	domain
Methyltransf_25	PF13649.6	gi|408406044|ref|YP_006864028.1|	-	0.031	15.0	0.0	0.07	13.8	0.0	1.6	1	0	0	1	1	1	0	Methyltransferase	domain
TrmB	PF01978.19	gi|408406044|ref|YP_006864028.1|	-	0.043	13.7	0.0	0.41	10.6	0.0	2.6	3	0	0	3	3	3	0	Sugar-specific	transcriptional	regulator	TrmB
Zn-ribbon_8	PF09723.10	gi|408406044|ref|YP_006864028.1|	-	0.062	13.4	1.8	0.13	12.4	1.8	1.6	1	0	0	1	1	1	0	Zinc	ribbon	domain
Acetyltransf_4	PF13420.7	gi|408406044|ref|YP_006864028.1|	-	0.094	12.8	0.0	0.18	11.9	0.0	1.4	1	0	0	1	1	1	0	Acetyltransferase	(GNAT)	domain
Fe_dep_repress	PF01325.19	gi|408406044|ref|YP_006864028.1|	-	0.13	12.4	0.0	0.29	11.4	0.0	1.5	1	0	0	1	1	1	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
TackOD1	PF18551.1	gi|408406044|ref|YP_006864028.1|	-	0.18	11.4	2.5	0.4	10.3	1.6	1.8	1	1	1	2	2	2	0	Thaumarchaeal	output	domain	1
C1_1	PF00130.22	gi|408406044|ref|YP_006864028.1|	-	0.43	10.5	0.1	0.43	10.5	0.1	2.3	2	1	1	3	3	3	0	Phorbol	esters/diacylglycerol	binding	domain	(C1	domain)
RNase_HII	PF01351.18	gi|408406045|ref|YP_006864029.1|	-	5.3e-43	147.2	0.1	6.2e-43	147.0	0.1	1.0	1	0	0	1	1	1	1	Ribonuclease	HII
DUF4332	PF14229.6	gi|408406045|ref|YP_006864029.1|	-	0.15	12.3	0.1	0.61	10.3	0.0	1.9	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4332)
Fibrillarin	PF01269.17	gi|408406046|ref|YP_006864030.1|	-	1.8e-89	298.8	0.0	2.1e-89	298.5	0.0	1.0	1	0	0	1	1	1	1	Fibrillarin
PCMT	PF01135.19	gi|408406046|ref|YP_006864030.1|	-	0.00017	21.4	0.1	0.00023	21.0	0.1	1.2	1	0	0	1	1	1	1	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
GCD14	PF08704.10	gi|408406046|ref|YP_006864030.1|	-	0.00018	21.3	0.0	0.00027	20.7	0.0	1.2	1	0	0	1	1	1	1	tRNA	methyltransferase	complex	GCD14	subunit
Methyltransf_25	PF13649.6	gi|408406046|ref|YP_006864030.1|	-	0.00094	19.8	0.0	0.0016	19.1	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltr_RsmB-F	PF01189.17	gi|408406046|ref|YP_006864030.1|	-	0.011	15.4	0.0	0.028	14.1	0.0	1.6	1	1	1	2	2	2	0	16S	rRNA	methyltransferase	RsmB/F
FtsJ	PF01728.19	gi|408406046|ref|YP_006864030.1|	-	0.021	14.9	0.0	0.026	14.6	0.0	1.2	1	0	0	1	1	1	0	FtsJ-like	methyltransferase
Nop	PF01798.18	gi|408406047|ref|YP_006864031.1|	-	3e-64	216.7	0.0	4.4e-64	216.1	0.0	1.3	1	0	0	1	1	1	1	snoRNA	binding	domain,	fibrillarin
SinI	PF08671.10	gi|408406047|ref|YP_006864031.1|	-	0.14	12.0	0.0	0.31	10.9	0.0	1.6	1	0	0	1	1	1	0	Anti-repressor	SinI
Peptidase_S24	PF00717.23	gi|408406049|ref|YP_006864033.1|	-	2e-08	34.0	2.0	3e-08	33.5	1.2	1.7	1	1	0	1	1	1	1	Peptidase	S24-like
Syndecan	PF01034.20	gi|408406049|ref|YP_006864033.1|	-	0.16	11.9	1.8	0.18	11.7	0.0	1.9	2	0	0	2	2	2	0	Syndecan	domain
UPF0047	PF01894.17	gi|408406050|ref|YP_006864034.1|	-	6.1e-37	126.3	0.0	7.2e-37	126.1	0.0	1.0	1	0	0	1	1	1	1	Uncharacterised	protein	family	UPF0047
TBP	PF00352.21	gi|408406051|ref|YP_006864035.1|	-	4.1e-53	177.3	0.1	5.2e-26	90.4	0.2	2.0	2	0	0	2	2	2	2	Transcription	factor	TFIID	(or	TATA-binding	protein,	TBP)
DUF3378	PF11858.8	gi|408406051|ref|YP_006864035.1|	-	5.6e-07	29.6	0.0	0.014	15.5	0.0	2.3	2	0	0	2	2	2	2	Domain	of	unknown	function	(DUF3378)
Pribosyltran	PF00156.27	gi|408406052|ref|YP_006864036.1|	-	4e-16	58.9	0.3	5.5e-16	58.5	0.3	1.2	1	0	0	1	1	1	1	Phosphoribosyl	transferase	domain
UPRTase	PF14681.6	gi|408406052|ref|YP_006864036.1|	-	0.0051	16.3	0.1	0.0071	15.8	0.1	1.2	1	0	0	1	1	1	1	Uracil	phosphoribosyltransferase
PRTase_2	PF15609.6	gi|408406052|ref|YP_006864036.1|	-	0.01	15.3	0.1	0.015	14.8	0.1	1.2	1	0	0	1	1	1	0	Phosphoribosyl	transferase
DUF674	PF05056.12	gi|408406052|ref|YP_006864036.1|	-	0.16	10.8	0.0	0.18	10.7	0.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF674)
Neocarzinostat	PF00960.18	gi|408406053|ref|YP_006864037.1|	-	0.066	13.2	1.8	0.14	12.1	1.8	1.5	1	0	0	1	1	1	0	Neocarzinostatin	family
Peptidase_M50	PF02163.22	gi|408406054|ref|YP_006864038.1|	-	6.4e-10	38.7	13.2	3.2e-06	26.6	10.9	3.0	2	1	0	2	2	2	1	Peptidase	family	M50
Acetyltransf_1	PF00583.25	gi|408406055|ref|YP_006864039.1|	-	2.3e-20	73.0	0.1	3.1e-20	72.6	0.1	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_7	PF13508.7	gi|408406055|ref|YP_006864039.1|	-	1.1e-13	51.4	0.2	2e-13	50.6	0.2	1.4	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_10	PF13673.7	gi|408406055|ref|YP_006864039.1|	-	1.6e-11	44.2	0.3	2.8e-11	43.4	0.3	1.4	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
FR47	PF08445.10	gi|408406055|ref|YP_006864039.1|	-	2.1e-11	43.6	0.3	6.1e-11	42.2	0.1	1.8	2	1	0	2	2	2	1	FR47-like	protein
Acetyltransf_9	PF13527.7	gi|408406055|ref|YP_006864039.1|	-	4.3e-06	26.8	0.0	9.5e-06	25.7	0.0	1.5	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_8	PF13523.6	gi|408406055|ref|YP_006864039.1|	-	0.0017	18.1	0.0	0.0072	16.0	0.0	2.0	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
GNAT_acetyltran	PF12746.7	gi|408406055|ref|YP_006864039.1|	-	0.021	14.4	0.0	0.1	12.1	0.0	1.8	1	1	1	2	2	2	0	GNAT	acetyltransferase
Acetyltransf_3	PF13302.7	gi|408406055|ref|YP_006864039.1|	-	0.022	15.4	0.0	0.033	14.8	0.0	1.4	1	1	0	1	1	1	0	Acetyltransferase	(GNAT)	domain
Acetyltransf_4	PF13420.7	gi|408406055|ref|YP_006864039.1|	-	0.032	14.3	0.3	0.052	13.7	0.3	1.4	1	1	0	1	1	1	0	Acetyltransferase	(GNAT)	domain
DUF4821	PF16092.5	gi|408406055|ref|YP_006864039.1|	-	0.033	13.8	0.0	0.047	13.3	0.0	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4821)
Acetyltransf_CG	PF14542.6	gi|408406055|ref|YP_006864039.1|	-	0.13	12.4	0.0	0.24	11.5	0.0	1.5	1	0	0	1	1	1	0	GCN5-related	N-acetyl-transferase
Met_10	PF02475.16	gi|408406056|ref|YP_006864040.1|	-	5.3e-62	209.1	0.7	6.7e-62	208.8	0.7	1.1	1	0	0	1	1	1	1	Met-10+	like-protein
Methyltransf_15	PF09445.10	gi|408406056|ref|YP_006864040.1|	-	3.6e-07	29.9	0.0	6.7e-07	29.0	0.0	1.5	1	0	0	1	1	1	1	RNA	cap	guanine-N2	methyltransferase
TRM	PF02005.16	gi|408406056|ref|YP_006864040.1|	-	2.7e-05	23.5	0.5	3.3e-05	23.2	0.5	1.2	1	0	0	1	1	1	1	N2,N2-dimethylguanosine	tRNA	methyltransferase
MTS	PF05175.14	gi|408406056|ref|YP_006864040.1|	-	0.00089	18.8	0.3	0.0018	17.9	0.3	1.6	1	1	0	1	1	1	1	Methyltransferase	small	domain
Methyltrans_SAM	PF10672.9	gi|408406056|ref|YP_006864040.1|	-	0.013	14.6	0.0	0.017	14.3	0.0	1.2	1	0	0	1	1	1	0	S-adenosylmethionine-dependent	methyltransferase
DUF2096	PF09869.9	gi|408406056|ref|YP_006864040.1|	-	0.018	15.1	0.2	0.084	12.9	0.0	2.0	2	0	0	2	2	2	0	Uncharacterized	protein	conserved	in	archaea	(DUF2096)
PrmA	PF06325.13	gi|408406056|ref|YP_006864040.1|	-	0.036	13.5	0.5	0.064	12.6	0.5	1.4	1	0	0	1	1	1	0	Ribosomal	protein	L11	methyltransferase	(PrmA)
Methyltransf_18	PF12847.7	gi|408406056|ref|YP_006864040.1|	-	0.037	14.0	0.2	0.065	13.2	0.2	1.4	1	0	0	1	1	1	0	Methyltransferase	domain
Methyltr_RsmB-F	PF01189.17	gi|408406056|ref|YP_006864040.1|	-	0.085	12.5	0.1	0.19	11.3	0.1	1.6	1	1	0	1	1	1	0	16S	rRNA	methyltransferase	RsmB/F
ABC_tran	PF00005.27	gi|408406057|ref|YP_006864041.1|	-	2.8e-38	131.5	0.0	7.7e-18	65.3	0.0	2.5	2	0	0	2	2	2	2	ABC	transporter
SMC_N	PF02463.19	gi|408406057|ref|YP_006864041.1|	-	2e-11	43.7	1.3	0.0001	21.8	0.3	3.1	2	2	0	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
AAA_21	PF13304.6	gi|408406057|ref|YP_006864041.1|	-	5.5e-11	42.8	4.8	0.016	15.0	0.1	4.2	2	2	1	4	4	4	3	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
Fer4	PF00037.27	gi|408406057|ref|YP_006864041.1|	-	4.8e-08	32.5	3.4	8.3e-08	31.7	3.4	1.4	1	0	0	1	1	1	1	4Fe-4S	binding	domain
Fer4_6	PF12837.7	gi|408406057|ref|YP_006864041.1|	-	2.7e-05	24.0	2.0	4.7e-05	23.3	2.0	1.4	1	0	0	1	1	1	1	4Fe-4S	binding	domain
Fer4_10	PF13237.6	gi|408406057|ref|YP_006864041.1|	-	0.00018	21.6	0.1	0.00032	20.8	0.1	1.4	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_21	PF14697.6	gi|408406057|ref|YP_006864041.1|	-	0.00024	21.1	2.5	0.00044	20.3	2.5	1.3	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
AAA_15	PF13175.6	gi|408406057|ref|YP_006864041.1|	-	0.00037	20.3	0.1	0.33	10.6	0.0	2.3	2	0	0	2	2	2	2	AAA	ATPase	domain
Fer4_9	PF13187.6	gi|408406057|ref|YP_006864041.1|	-	0.00075	19.6	1.0	0.0014	18.7	1.0	1.4	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
SbcCD_C	PF13558.6	gi|408406057|ref|YP_006864041.1|	-	0.00076	19.7	0.1	1.6	9.0	0.0	2.6	2	1	0	2	2	2	2	Putative	exonuclease	SbcCD,	C	subunit
Fer4_2	PF12797.7	gi|408406057|ref|YP_006864041.1|	-	0.00086	19.3	0.9	0.0017	18.4	0.9	1.4	1	0	0	1	1	1	1	4Fe-4S	binding	domain
MMR_HSR1	PF01926.23	gi|408406057|ref|YP_006864041.1|	-	0.0013	18.8	0.5	0.73	9.9	0.0	2.9	3	0	0	3	3	3	1	50S	ribosome-binding	GTPase
NB-ARC	PF00931.22	gi|408406057|ref|YP_006864041.1|	-	0.0016	17.7	0.6	0.024	13.8	0.0	2.3	2	0	0	2	2	2	1	NB-ARC	domain
AAA_29	PF13555.6	gi|408406057|ref|YP_006864041.1|	-	0.0022	17.7	0.4	0.15	11.9	0.0	2.8	2	0	0	2	2	2	1	P-loop	containing	region	of	AAA	domain
Fer4_7	PF12838.7	gi|408406057|ref|YP_006864041.1|	-	0.0023	18.5	0.6	0.0047	17.5	0.6	1.4	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_16	PF13484.6	gi|408406057|ref|YP_006864041.1|	-	0.0051	17.7	0.1	0.011	16.6	0.1	1.5	1	0	0	1	1	1	1	4Fe-4S	double	cluster	binding	domain
RsgA_GTPase	PF03193.16	gi|408406057|ref|YP_006864041.1|	-	0.0081	16.1	0.5	0.13	12.2	0.0	2.6	3	0	0	3	3	3	1	RsgA	GTPase
AAA_25	PF13481.6	gi|408406057|ref|YP_006864041.1|	-	0.021	14.4	0.1	6	6.4	0.0	2.6	2	0	0	2	2	2	0	AAA	domain
AAA_23	PF13476.6	gi|408406057|ref|YP_006864041.1|	-	0.023	15.2	3.3	2.7	8.4	0.0	2.6	3	0	0	3	3	2	0	AAA	domain
AAA_28	PF13521.6	gi|408406057|ref|YP_006864041.1|	-	0.038	14.2	2.1	15	5.8	0.1	3.7	4	0	0	4	4	4	0	AAA	domain
AAA_16	PF13191.6	gi|408406057|ref|YP_006864041.1|	-	0.042	14.2	2.2	3.2	8.1	0.1	3.1	2	2	0	2	2	2	0	AAA	ATPase	domain
Fer4_17	PF13534.6	gi|408406057|ref|YP_006864041.1|	-	0.044	14.3	0.1	0.097	13.2	0.1	1.5	1	0	0	1	1	1	0	4Fe-4S	dicluster	domain
AAA_24	PF13479.6	gi|408406057|ref|YP_006864041.1|	-	0.14	11.9	0.8	8.8	6.0	0.1	2.5	2	0	0	2	2	2	0	AAA	domain
Fer4_4	PF12800.7	gi|408406057|ref|YP_006864041.1|	-	0.16	12.6	1.9	0.29	11.7	1.9	1.3	1	0	0	1	1	1	0	4Fe-4S	binding	domain
Rad17	PF03215.15	gi|408406057|ref|YP_006864041.1|	-	0.16	11.9	0.0	1.2	9.0	0.0	2.1	2	0	0	2	2	2	0	Rad17	P-loop	domain
Fer4_22	PF17179.4	gi|408406057|ref|YP_006864041.1|	-	0.24	12.3	1.2	0.48	11.3	1.2	1.5	1	0	0	1	1	1	0	4Fe-4S	dicluster	domain
AAA_33	PF13671.6	gi|408406057|ref|YP_006864041.1|	-	0.26	11.4	1.3	32	4.7	0.1	3.3	2	2	0	2	2	2	0	AAA	domain
AAA_14	PF13173.6	gi|408406057|ref|YP_006864041.1|	-	0.27	11.3	2.3	15	5.6	0.0	3.5	4	0	0	4	4	4	0	AAA	domain
Fer4_3	PF12798.7	gi|408406057|ref|YP_006864041.1|	-	0.33	12.0	3.0	0.56	11.3	3.0	1.4	1	0	0	1	1	1	0	4Fe-4S	binding	domain
Hid1	PF12722.7	gi|408406058|ref|YP_006864042.1|	-	0.74	7.9	6.6	0.69	8.0	6.6	1.0	1	0	0	1	1	1	0	High-temperature-induced	dauer-formation	protein
SURF2	PF05477.11	gi|408406058|ref|YP_006864042.1|	-	1.2	8.8	7.0	1.4	8.6	7.0	1.2	1	0	0	1	1	1	0	Surfeit	locus	protein	2	(SURF2)
DUF5423	PF17461.2	gi|408406058|ref|YP_006864042.1|	-	2.4	6.9	9.7	3	6.6	9.7	1.1	1	0	0	1	1	1	0	Family	of	unknown	function	(DUF5423)
CCDC106	PF15794.5	gi|408406058|ref|YP_006864042.1|	-	3	7.5	7.2	4.4	6.9	7.2	1.3	1	0	0	1	1	1	0	Coiled-coil	domain-containing	protein	106
Macoilin	PF09726.9	gi|408406058|ref|YP_006864042.1|	-	6.2	5.3	6.9	6.2	5.2	6.9	1.0	1	0	0	1	1	1	0	Macoilin	family
Presenilin	PF01080.17	gi|408406058|ref|YP_006864042.1|	-	7	5.3	8.0	8	5.1	8.0	1.0	1	0	0	1	1	1	0	Presenilin
Yip1	PF04893.17	gi|408406061|ref|YP_006864045.1|	-	0.0011	18.7	26.3	0.0016	18.2	26.3	1.2	1	0	0	1	1	1	1	Yip1	domain
Peptidase_U4	PF03419.13	gi|408406061|ref|YP_006864045.1|	-	0.0051	16.1	15.1	0.0072	15.6	15.1	1.2	1	0	0	1	1	1	1	Sporulation	factor	SpoIIGA
ECF_trnsprt	PF12822.7	gi|408406061|ref|YP_006864045.1|	-	0.12	12.5	20.7	0.16	12.1	20.7	1.1	1	0	0	1	1	1	0	ECF	transporter,	substrate-specific	component
DUF805	PF05656.14	gi|408406061|ref|YP_006864045.1|	-	2	8.9	7.8	2.8	8.4	7.8	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF805)
DUF2070	PF09843.9	gi|408406061|ref|YP_006864045.1|	-	3.9	5.7	9.3	4.7	5.4	9.3	1.0	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2070)
Peptidase_M17	PF00883.21	gi|408406063|ref|YP_006864047.1|	-	3.2e-122	407.7	0.0	4.1e-122	407.3	0.0	1.1	1	0	0	1	1	1	1	Cytosol	aminopeptidase	family,	catalytic	domain
Peptidase_M17_N	PF02789.17	gi|408406063|ref|YP_006864047.1|	-	3e-22	78.8	0.5	8.6e-22	77.3	0.1	2.1	2	0	0	2	2	2	1	Cytosol	aminopeptidase	family,	N-terminal	domain
Med25_VWA	PF11265.8	gi|408406063|ref|YP_006864047.1|	-	0.024	14.4	0.0	0.061	13.1	0.0	1.6	2	0	0	2	2	2	0	Mediator	complex	subunit	25	von	Willebrand	factor	type	A
FYRN	PF05964.14	gi|408406064|ref|YP_006864048.1|	-	0.021	14.6	0.0	0.037	13.9	0.0	1.4	1	0	0	1	1	1	0	F/Y-rich	N-terminus
Ribul_P_3_epim	PF00834.19	gi|408406065|ref|YP_006864049.1|	-	4.8e-58	195.8	0.0	6.8e-58	195.3	0.0	1.2	1	0	0	1	1	1	1	Ribulose-phosphate	3	epimerase	family
Transketolase_N	PF00456.21	gi|408406065|ref|YP_006864049.1|	-	2.9e-49	167.8	0.0	4.7e-49	167.1	0.0	1.2	1	0	0	1	1	1	1	Transketolase,	thiamine	diphosphate	binding	domain
E1_dh	PF00676.20	gi|408406065|ref|YP_006864049.1|	-	3.8e-08	32.6	0.0	5.8e-08	32.0	0.0	1.2	1	0	0	1	1	1	1	Dehydrogenase	E1	component
DXP_synthase_N	PF13292.6	gi|408406065|ref|YP_006864049.1|	-	1.5e-07	30.9	0.0	5.5e-05	22.5	0.0	2.5	3	0	0	3	3	3	2	1-deoxy-D-xylulose-5-phosphate	synthase
TPP_enzyme_C	PF02775.21	gi|408406065|ref|YP_006864049.1|	-	0.00046	20.0	0.4	0.012	15.4	0.4	2.3	1	1	0	1	1	1	1	Thiamine	pyrophosphate	enzyme,	C-terminal	TPP	binding	domain
XFP_N	PF09364.10	gi|408406065|ref|YP_006864049.1|	-	0.037	12.8	0.0	0.062	12.1	0.0	1.4	1	0	0	1	1	1	0	XFP	N-terminal	domain
Transket_pyr	PF02779.24	gi|408406066|ref|YP_006864050.1|	-	5.3e-34	117.4	0.0	7.6e-34	116.9	0.0	1.2	1	0	0	1	1	1	1	Transketolase,	pyrimidine	binding	domain
Transketolase_C	PF02780.20	gi|408406066|ref|YP_006864050.1|	-	1.2e-33	115.7	0.3	1.2e-33	115.7	0.3	1.9	2	0	0	2	2	2	1	Transketolase,	C-terminal	domain
PFOR_II	PF17147.4	gi|408406066|ref|YP_006864050.1|	-	0.0025	18.1	0.4	0.0082	16.4	0.2	2.0	1	1	1	2	2	2	1	Pyruvate:ferredoxin	oxidoreductase	core	domain	II
TAL_FSA	PF00923.19	gi|408406067|ref|YP_006864051.1|	-	2.7e-60	204.2	0.9	5.3e-59	199.9	0.9	2.0	1	1	0	1	1	1	1	Transaldolase/Fructose-6-phosphate	aldolase
VWA	PF00092.28	gi|408406068|ref|YP_006864052.1|	-	2.9e-05	24.4	0.0	0.00019	21.7	0.0	2.3	2	1	0	2	2	2	1	von	Willebrand	factor	type	A	domain
DUF2201	PF09967.9	gi|408406068|ref|YP_006864052.1|	-	0.018	15.2	0.0	0.093	12.9	0.0	2.2	2	1	0	2	2	2	0	VWA-like	domain	(DUF2201)
AAA_5	PF07728.14	gi|408406069|ref|YP_006864053.1|	-	7.7e-28	97.2	0.0	1.1e-27	96.7	0.0	1.2	1	0	0	1	1	1	1	AAA	domain	(dynein-related	subfamily)
AAA_3	PF07726.11	gi|408406069|ref|YP_006864053.1|	-	5.1e-12	45.8	0.0	7.7e-12	45.2	0.0	1.3	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA	PF00004.29	gi|408406069|ref|YP_006864053.1|	-	5.8e-08	33.2	0.0	1e-07	32.4	0.0	1.4	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_16	PF13191.6	gi|408406069|ref|YP_006864053.1|	-	3.1e-07	30.9	0.2	8.2e-07	29.6	0.2	1.7	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_7	PF12775.7	gi|408406069|ref|YP_006864053.1|	-	4.4e-06	26.3	0.0	8.6e-06	25.4	0.0	1.4	1	0	0	1	1	1	1	P-loop	containing	dynein	motor	region
ATPase_2	PF01637.18	gi|408406069|ref|YP_006864053.1|	-	1e-05	25.6	0.0	1.7e-05	24.8	0.0	1.5	2	0	0	2	2	1	1	ATPase	domain	predominantly	from	Archaea
AAA_14	PF13173.6	gi|408406069|ref|YP_006864053.1|	-	5.6e-05	23.2	0.0	0.00014	21.9	0.0	1.7	1	0	0	1	1	1	1	AAA	domain
AAA_11	PF13086.6	gi|408406069|ref|YP_006864053.1|	-	8.5e-05	22.5	0.0	0.00013	21.9	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
AAA_22	PF13401.6	gi|408406069|ref|YP_006864053.1|	-	0.00012	22.4	0.2	0.00026	21.3	0.2	1.7	1	1	0	1	1	1	1	AAA	domain
AAA_30	PF13604.6	gi|408406069|ref|YP_006864053.1|	-	0.00022	21.0	0.6	0.0046	16.7	0.2	2.6	2	1	0	2	2	2	1	AAA	domain
Sigma54_activat	PF00158.26	gi|408406069|ref|YP_006864053.1|	-	0.00033	20.4	0.1	0.001	18.8	0.1	1.7	1	1	0	1	1	1	1	Sigma-54	interaction	domain
Sigma54_activ_2	PF14532.6	gi|408406069|ref|YP_006864053.1|	-	0.00033	20.8	0.0	0.00061	19.9	0.0	1.5	1	0	0	1	1	1	1	Sigma-54	interaction	domain
Mg_chelatase	PF01078.21	gi|408406069|ref|YP_006864053.1|	-	0.00069	19.1	0.2	0.3	10.4	0.2	2.3	1	1	0	1	1	1	1	Magnesium	chelatase,	subunit	ChlI
RuvB_N	PF05496.12	gi|408406069|ref|YP_006864053.1|	-	0.00095	18.9	0.1	0.0045	16.7	0.1	2.1	1	1	0	1	1	1	1	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
ABC_tran	PF00005.27	gi|408406069|ref|YP_006864053.1|	-	0.0013	19.3	0.1	0.0024	18.4	0.1	1.8	1	1	0	1	1	1	1	ABC	transporter
NACHT	PF05729.12	gi|408406069|ref|YP_006864053.1|	-	0.0014	18.6	0.0	0.0023	17.8	0.0	1.4	1	0	0	1	1	1	1	NACHT	domain
AAA_28	PF13521.6	gi|408406069|ref|YP_006864053.1|	-	0.0023	18.2	0.1	0.0074	16.5	0.0	1.9	2	0	0	2	2	1	1	AAA	domain
MCM	PF00493.23	gi|408406069|ref|YP_006864053.1|	-	0.0024	17.0	0.0	0.0058	15.7	0.0	1.6	1	1	0	1	1	1	1	MCM	P-loop	domain
SRP54	PF00448.22	gi|408406069|ref|YP_006864053.1|	-	0.0027	17.4	0.0	0.0062	16.2	0.0	1.5	1	0	0	1	1	1	1	SRP54-type	protein,	GTPase	domain
KAP_NTPase	PF07693.14	gi|408406069|ref|YP_006864053.1|	-	0.0032	16.7	0.0	0.0041	16.4	0.0	1.2	1	0	0	1	1	1	1	KAP	family	P-loop	domain
TniB	PF05621.11	gi|408406069|ref|YP_006864053.1|	-	0.0045	16.4	0.0	0.009	15.4	0.0	1.5	1	0	0	1	1	1	1	Bacterial	TniB	protein
AAA_35	PF14516.6	gi|408406069|ref|YP_006864053.1|	-	0.0046	15.8	0.0	0.013	14.3	0.0	1.7	1	1	1	2	2	2	1	AAA-like	domain
TsaE	PF02367.17	gi|408406069|ref|YP_006864053.1|	-	0.005	16.8	0.0	0.011	15.7	0.0	1.5	1	0	0	1	1	1	1	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
AAA_29	PF13555.6	gi|408406069|ref|YP_006864053.1|	-	0.0071	16.1	0.0	0.014	15.1	0.0	1.5	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_6	PF12774.7	gi|408406069|ref|YP_006864053.1|	-	0.0086	15.1	0.0	0.053	12.5	0.0	2.0	1	1	0	1	1	1	1	Hydrolytic	ATP	binding	site	of	dynein	motor	region
AAA_18	PF13238.6	gi|408406069|ref|YP_006864053.1|	-	0.0092	16.5	0.0	0.022	15.3	0.0	1.7	1	1	0	1	1	1	1	AAA	domain
RNA_helicase	PF00910.22	gi|408406069|ref|YP_006864053.1|	-	0.011	16.1	0.0	0.022	15.2	0.0	1.5	1	0	0	1	1	1	0	RNA	helicase
AAA_19	PF13245.6	gi|408406069|ref|YP_006864053.1|	-	0.012	15.9	2.5	0.26	11.6	2.5	2.6	1	1	0	1	1	1	0	AAA	domain
AAA_24	PF13479.6	gi|408406069|ref|YP_006864053.1|	-	0.012	15.3	0.1	0.028	14.2	0.1	1.6	1	0	0	1	1	1	0	AAA	domain
Roc	PF08477.13	gi|408406069|ref|YP_006864053.1|	-	0.013	15.7	0.1	0.046	13.9	0.1	1.8	2	0	0	2	2	2	0	Ras	of	Complex,	Roc,	domain	of	DAPkinase
T2SSE	PF00437.20	gi|408406069|ref|YP_006864053.1|	-	0.016	14.3	0.1	0.051	12.6	0.0	1.7	2	0	0	2	2	2	0	Type	II/IV	secretion	system	protein
Rad17	PF03215.15	gi|408406069|ref|YP_006864053.1|	-	0.017	15.1	0.3	0.056	13.4	0.0	1.9	2	0	0	2	2	2	0	Rad17	P-loop	domain
CbbQ_C	PF08406.10	gi|408406069|ref|YP_006864053.1|	-	0.017	15.4	0.1	0.03	14.6	0.1	1.4	1	0	0	1	1	1	0	CbbQ/NirQ/NorQ	C-terminal
AAA_33	PF13671.6	gi|408406069|ref|YP_006864053.1|	-	0.018	15.2	0.1	0.03	14.5	0.1	1.6	1	1	0	1	1	1	0	AAA	domain
ATPase	PF06745.13	gi|408406069|ref|YP_006864053.1|	-	0.023	14.1	0.0	0.044	13.1	0.0	1.4	1	0	0	1	1	1	0	KaiC
NTPase_1	PF03266.15	gi|408406069|ref|YP_006864053.1|	-	0.035	14.0	0.0	0.067	13.1	0.0	1.5	1	0	0	1	1	1	0	NTPase
NB-ARC	PF00931.22	gi|408406069|ref|YP_006864053.1|	-	0.037	13.2	0.0	0.051	12.8	0.0	1.3	1	0	0	1	1	1	0	NB-ARC	domain
RsgA_GTPase	PF03193.16	gi|408406069|ref|YP_006864053.1|	-	0.039	13.9	0.0	0.076	12.9	0.0	1.5	1	0	0	1	1	1	0	RsgA	GTPase
AAA_32	PF13654.6	gi|408406069|ref|YP_006864053.1|	-	0.053	12.3	0.0	0.093	11.5	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
IstB_IS21	PF01695.17	gi|408406069|ref|YP_006864053.1|	-	0.11	12.2	0.0	0.21	11.3	0.0	1.5	1	0	0	1	1	1	0	IstB-like	ATP	binding	protein
DUF815	PF05673.13	gi|408406069|ref|YP_006864053.1|	-	0.11	11.6	0.1	0.34	10.0	0.1	1.9	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF815)
AAA_23	PF13476.6	gi|408406069|ref|YP_006864053.1|	-	0.13	12.8	0.1	0.29	11.6	0.1	1.5	1	0	0	1	1	1	0	AAA	domain
Viral_helicase1	PF01443.18	gi|408406069|ref|YP_006864053.1|	-	0.16	11.7	0.0	0.23	11.1	0.0	1.2	1	0	0	1	1	1	0	Viral	(Superfamily	1)	RNA	helicase
AAA_25	PF13481.6	gi|408406069|ref|YP_006864053.1|	-	0.17	11.5	0.6	0.36	10.4	0.0	1.8	3	0	0	3	3	1	0	AAA	domain
MarR_2	PF12802.7	gi|408406071|ref|YP_006864055.1|	-	0.012	15.5	0.0	0.021	14.7	0.0	1.4	1	0	0	1	1	1	0	MarR	family
Hydrolase_like	PF13242.6	gi|408406071|ref|YP_006864055.1|	-	0.11	12.6	3.5	0.32	11.1	1.7	2.2	2	0	0	2	2	2	0	HAD-hyrolase-like
CPSase_L_D3	PF02787.19	gi|408406071|ref|YP_006864055.1|	-	0.17	12.3	0.1	0.23	11.8	0.1	1.3	1	0	0	1	1	1	0	Carbamoyl-phosphate	synthetase	large	chain,	oligomerisation	domain
RNR_N	PF08343.10	gi|408406072|ref|YP_006864056.1|	-	0.012	15.6	0.1	0.023	14.7	0.1	1.5	1	0	0	1	1	1	0	Ribonucleotide	reductase	N-terminal
MgtE_N	PF03448.17	gi|408406072|ref|YP_006864056.1|	-	0.043	14.4	0.0	0.07	13.7	0.0	1.4	1	0	0	1	1	1	0	MgtE	intracellular	N	domain
RE_BstXI	PF09552.10	gi|408406072|ref|YP_006864056.1|	-	0.056	12.6	0.0	0.073	12.3	0.0	1.1	1	0	0	1	1	1	0	BstXI	restriction	endonuclease
CsgA	PF17334.2	gi|408406072|ref|YP_006864056.1|	-	0.08	13.7	0.2	0.16	12.8	0.0	1.6	2	0	0	2	2	2	0	Minor	curli	fiber	component	A
DUF2555	PF10742.9	gi|408406072|ref|YP_006864056.1|	-	0.086	12.7	0.0	0.14	11.9	0.0	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2555)
TerC	PF03741.16	gi|408406073|ref|YP_006864057.1|	-	4.6e-52	176.3	19.0	1.2e-51	175.0	14.2	2.9	3	0	0	3	3	3	1	Integral	membrane	protein	TerC	family
DUF3291	PF11695.8	gi|408406074|ref|YP_006864058.1|	-	0.00035	20.3	0.5	0.00036	20.2	0.5	1.0	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF3291)
DUF4188	PF13826.6	gi|408406074|ref|YP_006864058.1|	-	0.012	16.0	0.4	0.012	15.9	0.4	1.0	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4188)
DUF4865	PF16157.5	gi|408406074|ref|YP_006864058.1|	-	0.033	14.2	0.1	0.033	14.2	0.1	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4865)
DUF460	PF04312.13	gi|408406075|ref|YP_006864059.1|	-	0.00027	20.7	0.2	0.00056	19.6	0.1	1.7	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF460)
RuvX	PF03652.15	gi|408406075|ref|YP_006864059.1|	-	0.0013	19.1	0.4	0.017	15.5	0.4	2.2	1	1	0	1	1	1	1	Holliday	junction	resolvase
Tex_YqgF	PF16921.5	gi|408406075|ref|YP_006864059.1|	-	0.0045	17.4	0.2	0.012	16.1	0.2	1.7	1	1	0	1	1	1	1	Tex	protein	YqgF-like	domain
Aconitase_B_N	PF11791.8	gi|408406075|ref|YP_006864059.1|	-	0.1	12.7	0.4	0.29	11.2	0.1	1.8	1	1	1	2	2	2	0	Aconitate	B	N-terminal	domain
MRFAP1	PF15155.6	gi|408406075|ref|YP_006864059.1|	-	0.11	13.1	0.1	0.22	12.0	0.1	1.5	1	1	0	1	1	1	0	MORF4	family-associated	protein1
VBS	PF08913.10	gi|408406076|ref|YP_006864060.1|	-	0.00093	19.6	0.5	0.0013	19.2	0.5	1.4	1	0	0	1	1	1	1	Vinculin	Binding	Site
V-ATPase_G_2	PF16999.5	gi|408406076|ref|YP_006864060.1|	-	0.0011	19.3	9.7	0.027	14.9	9.8	2.4	1	1	0	1	1	1	1	Vacuolar	(H+)-ATPase	G	subunit
Apolipoprotein	PF01442.18	gi|408406076|ref|YP_006864060.1|	-	0.0014	18.5	1.8	0.0019	18.1	1.8	1.2	1	0	0	1	1	1	1	Apolipoprotein	A1/A4/E	domain
Exonuc_VII_L	PF02601.15	gi|408406076|ref|YP_006864060.1|	-	0.0023	17.6	1.4	0.0027	17.3	1.4	1.1	1	0	0	1	1	1	1	Exonuclease	VII,	large	subunit
DUF883	PF05957.13	gi|408406076|ref|YP_006864060.1|	-	0.0034	17.9	3.2	0.062	13.9	2.2	2.2	1	1	1	2	2	2	1	Bacterial	protein	of	unknown	function	(DUF883)
YabA	PF06156.13	gi|408406076|ref|YP_006864060.1|	-	0.011	16.3	1.9	0.017	15.7	1.9	1.4	1	0	0	1	1	1	0	Initiation	control	protein	YabA
DUF2884	PF11101.8	gi|408406076|ref|YP_006864060.1|	-	0.014	14.9	2.9	1.4	8.4	0.4	2.1	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF2884)
SCAB_CC	PF16712.5	gi|408406076|ref|YP_006864060.1|	-	0.014	15.2	7.8	0.024	14.5	7.6	1.5	1	1	0	1	1	1	0	Coiled-coil	regions	of	plant-specific	actin-binding	protein
DUF5471	PF17565.2	gi|408406076|ref|YP_006864060.1|	-	0.016	15.5	0.5	0.037	14.3	0.3	1.7	1	1	0	1	1	1	0	Family	of	unknown	function	(DUF5471)
DUF826	PF05696.11	gi|408406076|ref|YP_006864060.1|	-	0.026	14.6	1.9	0.052	13.6	0.2	2.2	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF826)
Duffy_binding	PF05424.11	gi|408406076|ref|YP_006864060.1|	-	0.034	14.2	0.4	0.041	13.9	0.4	1.1	1	0	0	1	1	1	0	Duffy	binding	domain
DUF4085	PF13315.6	gi|408406076|ref|YP_006864060.1|	-	0.051	13.2	0.3	0.061	13.0	0.3	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF4085)
Ntox50	PF15542.6	gi|408406076|ref|YP_006864060.1|	-	0.076	13.8	0.3	0.11	13.3	0.3	1.2	1	0	0	1	1	1	0	Bacterial	toxin	50
LPP	PF04728.13	gi|408406076|ref|YP_006864060.1|	-	0.1	13.0	7.5	6.9	7.1	0.0	3.1	1	1	2	3	3	3	0	Lipoprotein	leucine-zipper
DUF1690	PF07956.11	gi|408406076|ref|YP_006864060.1|	-	0.11	12.9	2.6	0.14	12.6	0.5	1.7	1	1	0	1	1	1	0	Protein	of	Unknown	function	(DUF1690)
ATP-synt_B	PF00430.18	gi|408406076|ref|YP_006864060.1|	-	0.14	12.3	9.7	0.26	11.4	9.4	1.6	1	1	0	1	1	1	0	ATP	synthase	B/B'	CF(0)
DUF760	PF05542.11	gi|408406076|ref|YP_006864060.1|	-	0.24	11.8	1.2	7	7.1	1.2	2.6	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF760)
DivIVA	PF05103.13	gi|408406076|ref|YP_006864060.1|	-	0.28	11.3	7.7	0.44	10.6	7.5	1.5	1	1	0	1	1	1	0	DivIVA	protein
HSCB_C	PF07743.13	gi|408406076|ref|YP_006864060.1|	-	0.48	10.9	5.8	2.1	8.9	2.1	2.3	1	1	1	2	2	2	0	HSCB	C-terminal	oligomerisation	domain
FlaC_arch	PF05377.11	gi|408406076|ref|YP_006864060.1|	-	1	9.8	5.1	1.2	9.6	1.3	2.6	1	1	1	2	2	2	0	Flagella	accessory	protein	C	(FlaC)
YtxH	PF12732.7	gi|408406076|ref|YP_006864060.1|	-	2.7	8.6	6.2	67	4.1	6.2	2.3	1	1	0	1	1	1	0	YtxH-like	protein
NAC	PF01849.18	gi|408406077|ref|YP_006864061.1|	-	2.6e-12	46.5	2.0	3.1e-11	43.1	0.7	2.1	2	0	0	2	2	2	1	NAC	domain
HOIP-UBA	PF16678.5	gi|408406077|ref|YP_006864061.1|	-	0.0032	17.5	0.1	0.0033	17.5	0.1	1.2	1	0	0	1	1	1	1	HOIP	UBA	domain	pair
UBA_4	PF14555.6	gi|408406077|ref|YP_006864061.1|	-	0.15	11.9	0.0	0.23	11.3	0.0	1.3	1	0	0	1	1	1	0	UBA-like	domain
PUA	PF01472.20	gi|408406078|ref|YP_006864062.1|	-	3.3e-09	36.6	0.0	5.2e-09	36.0	0.0	1.3	1	0	0	1	1	1	1	PUA	domain
TGT_C2	PF14810.6	gi|408406078|ref|YP_006864062.1|	-	4.7e-07	29.9	0.1	7.3e-07	29.2	0.1	1.3	1	0	0	1	1	1	1	Patch-forming	domain	C2	of	tRNA-guanine	transglycosylase
PhoU	PF01895.19	gi|408406079|ref|YP_006864063.1|	-	5.8e-26	90.8	13.3	1e-18	67.5	2.1	2.8	3	0	0	3	3	3	2	PhoU	domain
MazE_antitoxin	PF04014.18	gi|408406079|ref|YP_006864063.1|	-	1.3e-09	37.7	1.8	2.5e-09	36.9	0.0	2.3	3	0	0	3	3	3	1	Antidote-toxin	recognition	MazE,	bacterial	antitoxin
HTH_3	PF01381.22	gi|408406080|ref|YP_006864064.1|	-	2.8e-07	30.5	0.1	5e-07	29.7	0.1	1.4	1	0	0	1	1	1	1	Helix-turn-helix
HTH_31	PF13560.6	gi|408406080|ref|YP_006864064.1|	-	0.00034	20.9	0.0	0.00053	20.3	0.0	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
zf-dskA_traR	PF01258.17	gi|408406080|ref|YP_006864064.1|	-	0.0054	16.6	2.4	0.019	14.9	2.4	1.9	1	1	0	1	1	1	1	Prokaryotic	dksA/traR	C4-type	zinc	finger
Pou	PF00157.17	gi|408406080|ref|YP_006864064.1|	-	0.0075	16.2	0.0	0.016	15.1	0.0	1.6	1	0	0	1	1	1	1	Pou	domain	-	N-terminal	to	homeobox	domain
HTH_25	PF13413.6	gi|408406080|ref|YP_006864064.1|	-	0.02	14.8	0.2	0.051	13.4	0.2	1.7	1	1	0	1	1	1	0	Helix-turn-helix	domain
NOB1_Zn_bind	PF08772.11	gi|408406080|ref|YP_006864064.1|	-	0.22	11.7	1.4	0.58	10.4	1.3	1.8	1	1	1	2	2	2	0	Nin	one	binding	(NOB1)	Zn-ribbon	like
GTP-bdg_N	PF13167.6	gi|408406081|ref|YP_006864065.1|	-	5.8e-23	81.4	0.4	1.5e-22	80.1	0.4	1.7	1	0	0	1	1	1	1	GTP-binding	GTPase	N-terminal
MMR_HSR1	PF01926.23	gi|408406081|ref|YP_006864065.1|	-	4.5e-15	55.7	0.4	3.4e-14	52.9	0.2	2.3	2	0	0	2	2	2	1	50S	ribosome-binding	GTPase
GTP-bdg_M	PF16360.5	gi|408406081|ref|YP_006864065.1|	-	5.2e-13	49.4	5.7	1.2e-12	48.3	5.7	1.6	1	0	0	1	1	1	1	GTP-binding	GTPase	Middle	Region
FeoB_N	PF02421.18	gi|408406081|ref|YP_006864065.1|	-	7.1e-06	25.6	0.6	2.4e-05	23.9	0.6	2.0	1	1	0	1	1	1	1	Ferrous	iron	transport	protein	B
MMR_HSR1_Xtn	PF16897.5	gi|408406081|ref|YP_006864065.1|	-	0.00015	21.7	0.2	0.00037	20.5	0.2	1.7	1	0	0	1	1	1	1	C-terminal	region	of	MMR_HSR1	domain
RsgA_GTPase	PF03193.16	gi|408406081|ref|YP_006864065.1|	-	0.00017	21.5	0.2	0.15	12.0	0.0	2.6	2	0	0	2	2	2	2	RsgA	GTPase
GTP_EFTU	PF00009.27	gi|408406081|ref|YP_006864065.1|	-	0.00064	19.3	1.5	0.33	10.5	0.1	2.9	2	1	0	2	2	2	2	Elongation	factor	Tu	GTP	binding	domain
ABC_tran	PF00005.27	gi|408406081|ref|YP_006864065.1|	-	0.0068	16.9	0.1	0.047	14.2	0.0	2.3	2	0	0	2	2	2	1	ABC	transporter
SRPRB	PF09439.10	gi|408406081|ref|YP_006864065.1|	-	0.0082	15.6	0.1	0.0082	15.6	0.1	2.0	2	0	0	2	2	2	1	Signal	recognition	particle	receptor	beta	subunit
PduV-EutP	PF10662.9	gi|408406081|ref|YP_006864065.1|	-	0.029	14.1	1.7	1.5	8.6	1.7	2.4	1	1	0	1	1	1	0	Ethanolamine	utilisation	-	propanediol	utilisation
DNAPolymera_Pol	PF11590.8	gi|408406081|ref|YP_006864065.1|	-	0.036	13.9	1.0	0.091	12.7	1.0	1.7	1	0	0	1	1	1	0	DNA	polymerase	catalytic	subunit	Pol
Ras	PF00071.22	gi|408406081|ref|YP_006864065.1|	-	0.037	13.6	1.0	0.19	11.3	0.3	2.4	2	1	0	2	2	2	0	Ras	family
MnmE_helical	PF12631.7	gi|408406081|ref|YP_006864065.1|	-	0.038	14.1	0.0	0.08	13.1	0.0	1.5	1	1	0	1	1	1	0	MnmE	helical	domain
AAA_16	PF13191.6	gi|408406081|ref|YP_006864065.1|	-	0.043	14.2	0.0	0.11	12.9	0.0	1.8	2	0	0	2	2	2	0	AAA	ATPase	domain
Dynamin_N	PF00350.23	gi|408406081|ref|YP_006864065.1|	-	0.064	13.3	0.3	0.76	9.8	0.3	2.5	1	1	0	1	1	1	0	Dynamin	family
MobB	PF03205.14	gi|408406081|ref|YP_006864065.1|	-	0.07	13.0	0.5	0.85	9.5	0.1	2.7	2	1	0	2	2	2	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
Roc	PF08477.13	gi|408406081|ref|YP_006864065.1|	-	0.11	12.7	0.7	1.2	9.3	0.1	2.5	3	0	0	3	3	3	0	Ras	of	Complex,	Roc,	domain	of	DAPkinase
cobW	PF02492.19	gi|408406081|ref|YP_006864065.1|	-	0.25	10.9	5.5	0.37	10.4	0.2	2.6	2	1	1	3	3	3	0	CobW/HypB/UreG,	nucleotide-binding	domain
Trm56	PF01994.16	gi|408406082|ref|YP_006864066.1|	-	4.7e-51	171.7	0.0	6.1e-51	171.3	0.0	1.1	1	0	0	1	1	1	1	tRNA	ribose	2'-O-methyltransferase,	aTrm56
SpoU_methylase	PF00588.19	gi|408406082|ref|YP_006864066.1|	-	0.00061	20.0	0.0	0.00082	19.6	0.0	1.1	1	0	0	1	1	1	1	SpoU	rRNA	Methylase	family
SPOUT_MTase_2	PF14419.6	gi|408406082|ref|YP_006864066.1|	-	0.04	13.3	0.0	0.089	12.1	0.0	1.5	1	1	0	1	1	1	0	AF2226-like	SPOUT	RNA	Methylase	fused	to	THUMP
Glyoxalase_4	PF13669.6	gi|408406082|ref|YP_006864066.1|	-	0.045	14.0	0.0	0.06	13.6	0.0	1.3	1	0	0	1	1	1	0	Glyoxalase/Bleomycin	resistance	protein/Dioxygenase	superfamily
HTH_20	PF12840.7	gi|408406083|ref|YP_006864067.1|	-	7.1e-14	51.6	0.1	1.4e-13	50.7	0.1	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_5	PF01022.20	gi|408406083|ref|YP_006864067.1|	-	1e-13	50.9	0.0	1.5e-13	50.4	0.0	1.2	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
MarR_2	PF12802.7	gi|408406083|ref|YP_006864067.1|	-	1.7e-06	27.8	0.1	2.4e-06	27.3	0.1	1.2	1	0	0	1	1	1	1	MarR	family
HTH_24	PF13412.6	gi|408406083|ref|YP_006864067.1|	-	0.00048	19.6	0.0	0.00096	18.7	0.0	1.5	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
TrmB	PF01978.19	gi|408406083|ref|YP_006864067.1|	-	0.00099	19.0	0.0	0.0017	18.2	0.0	1.4	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
pXO2-72	PF17443.2	gi|408406083|ref|YP_006864067.1|	-	0.0047	17.2	0.0	0.0079	16.4	0.0	1.4	1	0	0	1	1	1	1	Uncharacterized	protein	pXO2-72
HTH_28	PF13518.6	gi|408406083|ref|YP_006864067.1|	-	0.017	15.3	0.0	0.034	14.3	0.0	1.5	1	0	0	1	1	1	0	Helix-turn-helix	domain
Rrf2	PF02082.20	gi|408406083|ref|YP_006864067.1|	-	0.024	15.0	0.0	0.032	14.6	0.0	1.2	1	0	0	1	1	1	0	Transcriptional	regulator
HTH_34	PF13601.6	gi|408406083|ref|YP_006864067.1|	-	0.03	14.5	0.0	0.057	13.6	0.0	1.4	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
MarR	PF01047.22	gi|408406083|ref|YP_006864067.1|	-	0.032	14.2	0.0	0.051	13.5	0.0	1.4	1	0	0	1	1	1	0	MarR	family
Bac_globin	PF01152.21	gi|408406084|ref|YP_006864068.1|	-	0.15	12.2	0.0	0.31	11.2	0.0	1.5	1	1	0	1	1	1	0	Bacterial-like	globin
CTP_transf_1	PF01148.20	gi|408406085|ref|YP_006864069.1|	-	2.8e-05	24.0	9.8	8.9e-05	22.4	2.7	2.0	1	1	0	2	2	2	2	Cytidylyltransferase	family
DUF1664	PF07889.12	gi|408406085|ref|YP_006864069.1|	-	0.02	14.9	0.0	0.031	14.3	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1664)
DUF543	PF04418.12	gi|408406085|ref|YP_006864069.1|	-	0.19	11.8	0.9	0.41	10.7	0.0	2.0	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF543)
DUF697	PF05128.12	gi|408406085|ref|YP_006864069.1|	-	1.2	8.8	3.5	3	7.5	0.2	2.3	2	1	0	2	2	2	0	Domain	of	unknown	function	(DUF697)
AMP-binding	PF00501.28	gi|408406086|ref|YP_006864070.1|	-	7.7e-83	278.4	0.0	1e-82	278.0	0.0	1.2	1	0	0	1	1	1	1	AMP-binding	enzyme
AMP-binding_C	PF13193.6	gi|408406086|ref|YP_006864070.1|	-	2.3e-23	83.0	1.4	4.6e-23	82.0	1.4	1.6	1	0	0	1	1	1	1	AMP-binding	enzyme	C-terminal	domain
ACAS_N	PF16177.5	gi|408406086|ref|YP_006864070.1|	-	1.1e-09	38.1	4.8	2.8e-09	36.7	4.8	1.8	1	0	0	1	1	1	1	Acetyl-coenzyme	A	synthetase	N-terminus
CstA	PF02554.14	gi|408406086|ref|YP_006864070.1|	-	1.7	7.5	4.3	2	7.2	0.1	2.1	2	0	0	2	2	2	0	Carbon	starvation	protein	CstA
Cons_hypoth95	PF03602.15	gi|408406087|ref|YP_006864071.1|	-	0.0005	19.8	0.0	0.00055	19.6	0.0	1.1	1	0	0	1	1	1	1	Conserved	hypothetical	protein	95
MethyltransfD12	PF02086.15	gi|408406087|ref|YP_006864071.1|	-	0.024	14.3	0.0	0.024	14.3	0.0	1.1	1	0	0	1	1	1	0	D12	class	N6	adenine-specific	DNA	methyltransferase
RsmJ	PF04378.13	gi|408406087|ref|YP_006864071.1|	-	0.029	13.6	0.0	0.031	13.5	0.0	1.1	1	0	0	1	1	1	0	Ribosomal	RNA	large	subunit	methyltransferase	D,	RlmJ
SAM_MT	PF04445.13	gi|408406087|ref|YP_006864071.1|	-	0.16	11.4	0.0	0.19	11.1	0.0	1.1	1	0	0	1	1	1	0	Putative	SAM-dependent	methyltransferase
N6_N4_Mtase	PF01555.18	gi|408406087|ref|YP_006864071.1|	-	0.17	11.6	0.0	0.19	11.4	0.0	1.1	1	0	0	1	1	1	0	DNA	methylase
N6_N4_Mtase	PF01555.18	gi|408406088|ref|YP_006864072.1|	-	1.4e-08	34.7	0.0	1.4e-08	34.7	0.0	1.0	1	0	0	1	1	1	1	DNA	methylase
N6_N4_Mtase	PF01555.18	gi|408406089|ref|YP_006864073.1|	-	5.6e-21	75.3	0.0	6.2e-21	75.2	0.0	1.1	1	0	0	1	1	1	1	DNA	methylase
Methyltransf_25	PF13649.6	gi|408406089|ref|YP_006864073.1|	-	0.0029	18.3	0.0	0.0043	17.7	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.6	gi|408406089|ref|YP_006864073.1|	-	0.0048	16.7	0.0	0.0065	16.3	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
MethyltransfD12	PF02086.15	gi|408406089|ref|YP_006864073.1|	-	0.015	15.0	0.0	0.019	14.7	0.0	1.1	1	0	0	1	1	1	0	D12	class	N6	adenine-specific	DNA	methyltransferase
Methyltransf_15	PF09445.10	gi|408406089|ref|YP_006864073.1|	-	0.13	11.9	0.0	0.18	11.4	0.0	1.3	1	0	0	1	1	1	0	RNA	cap	guanine-N2	methyltransferase
UPF0020	PF01170.18	gi|408406089|ref|YP_006864073.1|	-	0.13	11.9	0.0	0.16	11.6	0.0	1.2	1	0	0	1	1	1	0	Putative	RNA	methylase	family	UPF0020
PrmA	PF06325.13	gi|408406089|ref|YP_006864073.1|	-	0.17	11.2	0.0	0.2	11.0	0.0	1.1	1	0	0	1	1	1	0	Ribosomal	protein	L11	methyltransferase	(PrmA)
Mrr_cat	PF04471.12	gi|408406090|ref|YP_006864074.1|	-	0.0057	16.7	0.0	0.0088	16.1	0.0	1.4	1	0	0	1	1	1	1	Restriction	endonuclease
rve_3	PF13683.6	gi|408406091|ref|YP_006864075.1|	-	0.00011	21.9	0.1	0.00016	21.4	0.1	1.3	1	0	0	1	1	1	1	Integrase	core	domain
DUF1749	PF08538.10	gi|408406091|ref|YP_006864075.1|	-	0.06	12.4	0.1	0.061	12.4	0.1	1.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1749)
DDE_Tnp_IS66	PF03050.14	gi|408406092|ref|YP_006864076.1|	-	0.008	15.7	0.0	0.012	15.1	0.0	1.2	1	0	0	1	1	1	1	Transposase	IS66	family
Transposase_mut	PF00872.18	gi|408406092|ref|YP_006864076.1|	-	0.0096	14.8	0.1	0.027	13.3	0.1	1.6	1	1	0	1	1	1	1	Transposase,	Mutator	family
Terminase_5	PF06056.12	gi|408406092|ref|YP_006864076.1|	-	0.01	15.7	0.0	0.021	14.7	0.0	1.5	1	0	0	1	1	1	0	Putative	ATPase	subunit	of	terminase	(gpP-like)
zf-trcl	PF13451.6	gi|408406092|ref|YP_006864076.1|	-	0.031	14.2	1.3	1.2	9.1	0.1	2.4	2	0	0	2	2	2	0	Probable	zinc-ribbon	domain
Zn_ribbon_recom	PF13408.6	gi|408406092|ref|YP_006864076.1|	-	0.032	14.7	1.7	0.075	13.5	1.7	1.6	1	0	0	1	1	1	0	Recombinase	zinc	beta	ribbon	domain
Zn_Tnp_IS1595	PF12760.7	gi|408406092|ref|YP_006864076.1|	-	0.049	13.6	2.8	0.11	12.5	2.8	1.6	1	0	0	1	1	1	0	Transposase	zinc-ribbon	domain
Zn-ribbon_8	PF09723.10	gi|408406092|ref|YP_006864076.1|	-	0.064	13.4	0.8	15	5.8	0.0	2.6	2	0	0	2	2	2	0	Zinc	ribbon	domain
Zn_Tnp_IS1	PF03811.13	gi|408406092|ref|YP_006864076.1|	-	0.2	11.4	4.3	0.49	10.2	4.3	1.6	1	0	0	1	1	1	0	InsA	N-terminal	domain
Zn_ribbon_SprT	PF17283.2	gi|408406092|ref|YP_006864076.1|	-	0.4	10.6	4.0	0.95	9.4	4.0	1.7	1	0	0	1	1	1	0	SprT-like	zinc	ribbon	domain
Peptidase_M1	PF01433.20	gi|408406094|ref|YP_006864078.1|	-	9.4e-56	188.8	1.7	1.8e-55	187.9	1.7	1.5	1	0	0	1	1	1	1	Peptidase	family	M1	domain
HEAT_2	PF13646.6	gi|408406094|ref|YP_006864078.1|	-	8.8e-30	103.0	9.9	6.8e-11	42.4	0.2	3.5	2	1	1	3	3	3	3	HEAT	repeats
Peptidase_M1_N	PF17900.1	gi|408406094|ref|YP_006864078.1|	-	1.5e-27	97.0	0.0	3.4e-27	95.8	0.0	1.6	1	0	0	1	1	1	1	Peptidase	M1	N-terminal	domain
HEAT_PBS	PF03130.16	gi|408406094|ref|YP_006864078.1|	-	2e-14	52.7	14.1	0.043	14.5	1.2	6.7	6	0	0	6	6	6	4	PBS	lyase	HEAT-like	repeat
HEAT	PF02985.22	gi|408406094|ref|YP_006864078.1|	-	4.5e-07	29.6	3.8	2.5	8.6	0.0	5.7	6	0	0	6	6	6	3	HEAT	repeat
HEAT_EZ	PF13513.6	gi|408406094|ref|YP_006864078.1|	-	0.93	10.1	5.3	6.9	7.3	0.3	4.0	3	2	1	4	4	4	0	HEAT-like	repeat
Abhydrolase_1	PF00561.20	gi|408406095|ref|YP_006864079.1|	-	1.3e-25	90.5	0.0	9.2e-24	84.5	0.0	2.0	1	1	0	1	1	1	1	alpha/beta	hydrolase	fold
Abhydrolase_6	PF12697.7	gi|408406095|ref|YP_006864079.1|	-	8.5e-22	78.8	0.0	9.9e-22	78.6	0.0	1.0	1	0	0	1	1	1	1	Alpha/beta	hydrolase	family
Hydrolase_4	PF12146.8	gi|408406095|ref|YP_006864079.1|	-	2.7e-18	66.1	0.0	4.5e-18	65.4	0.0	1.3	1	0	0	1	1	1	1	Serine	aminopeptidase,	S33
Abhydrolase_2	PF02230.16	gi|408406095|ref|YP_006864079.1|	-	5.1e-05	23.2	0.1	1.9	8.2	0.0	3.1	2	1	1	3	3	3	2	Phospholipase/Carboxylesterase
Ndr	PF03096.14	gi|408406095|ref|YP_006864079.1|	-	0.0013	17.5	0.0	0.004	15.9	0.0	2.0	1	1	0	1	1	1	1	Ndr	family
UPF0227	PF05728.12	gi|408406095|ref|YP_006864079.1|	-	0.0017	18.3	0.0	0.0037	17.2	0.0	1.7	1	1	0	1	1	1	1	Uncharacterised	protein	family	(UPF0227)
BAAT_C	PF08840.11	gi|408406095|ref|YP_006864079.1|	-	0.0037	17.2	0.0	0.036	14.0	0.0	2.1	1	1	0	1	1	1	1	BAAT	/	Acyl-CoA	thioester	hydrolase	C	terminal
Abhydrolase_3	PF07859.13	gi|408406095|ref|YP_006864079.1|	-	0.0047	16.8	0.0	0.0071	16.2	0.0	1.4	1	1	0	1	1	1	1	alpha/beta	hydrolase	fold
Thioesterase	PF00975.20	gi|408406095|ref|YP_006864079.1|	-	0.0066	16.6	0.0	0.012	15.7	0.0	1.4	1	0	0	1	1	1	1	Thioesterase	domain
PGAP1	PF07819.13	gi|408406095|ref|YP_006864079.1|	-	0.0079	15.9	0.7	0.68	9.6	0.0	2.2	1	1	1	2	2	2	1	PGAP1-like	protein
Esterase	PF00756.20	gi|408406095|ref|YP_006864079.1|	-	0.016	14.9	0.0	0.024	14.3	0.0	1.2	1	0	0	1	1	1	0	Putative	esterase
Abhydrolase_5	PF12695.7	gi|408406095|ref|YP_006864079.1|	-	0.035	13.9	0.0	6.9	6.4	0.0	2.4	2	0	0	2	2	2	0	Alpha/beta	hydrolase	family
LIDHydrolase	PF10230.9	gi|408406095|ref|YP_006864079.1|	-	0.06	12.9	0.0	0.16	11.5	0.0	1.7	1	1	1	2	2	2	0	Lipid-droplet	associated	hydrolase
DLH	PF01738.18	gi|408406095|ref|YP_006864079.1|	-	0.064	12.8	0.0	2.3	7.7	0.0	2.2	2	0	0	2	2	2	0	Dienelactone	hydrolase	family
Peptidase_S9	PF00326.21	gi|408406095|ref|YP_006864079.1|	-	0.073	12.5	0.0	7.3	6.0	0.0	2.3	1	1	1	2	2	2	0	Prolyl	oligopeptidase	family
DUF2920	PF11144.8	gi|408406095|ref|YP_006864079.1|	-	0.096	11.8	0.0	2	7.5	0.0	2.0	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF2920)
Lipase	PF00151.19	gi|408406095|ref|YP_006864079.1|	-	0.14	11.4	0.0	0.22	10.8	0.0	1.3	1	1	0	1	1	1	0	Lipase
Chlorophyllase2	PF12740.7	gi|408406095|ref|YP_006864079.1|	-	0.17	10.8	0.0	0.29	10.0	0.0	1.3	1	0	0	1	1	1	0	Chlorophyllase	enzyme
Palm_thioest	PF02089.15	gi|408406095|ref|YP_006864079.1|	-	0.22	11.3	0.0	0.32	10.8	0.0	1.3	1	1	0	1	1	1	0	Palmitoyl	protein	thioesterase
Acetyltransf_1	PF00583.25	gi|408406096|ref|YP_006864080.1|	-	7.9e-16	58.3	0.0	1.5e-15	57.5	0.0	1.4	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_7	PF13508.7	gi|408406096|ref|YP_006864080.1|	-	4.9e-10	39.7	0.0	9.8e-10	38.7	0.0	1.5	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_9	PF13527.7	gi|408406096|ref|YP_006864080.1|	-	8.9e-08	32.3	0.0	6e-07	29.6	0.0	2.2	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_10	PF13673.7	gi|408406096|ref|YP_006864080.1|	-	1.8e-07	31.2	0.0	3.5e-07	30.2	0.0	1.5	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_3	PF13302.7	gi|408406096|ref|YP_006864080.1|	-	2.7e-07	31.3	0.2	1e-06	29.5	0.1	2.0	2	1	0	2	2	2	1	Acetyltransferase	(GNAT)	domain
FR47	PF08445.10	gi|408406096|ref|YP_006864080.1|	-	0.00096	19.1	0.0	0.0018	18.2	0.0	1.3	1	0	0	1	1	1	1	FR47-like	protein
GNAT_acetyltran	PF12746.7	gi|408406096|ref|YP_006864080.1|	-	0.021	14.4	0.0	0.039	13.5	0.0	1.4	1	0	0	1	1	1	0	GNAT	acetyltransferase
Acetyltransf_15	PF17013.5	gi|408406096|ref|YP_006864080.1|	-	0.038	13.5	0.2	4.4	6.7	0.0	2.2	2	0	0	2	2	2	0	Putative	acetyl-transferase
Acetyltransf_13	PF13880.6	gi|408406096|ref|YP_006864080.1|	-	0.049	13.6	0.1	0.17	11.9	0.0	2.0	2	0	0	2	2	2	0	ESCO1/2	acetyl-transferase
dCMP_cyt_deam_1	PF00383.23	gi|408406098|ref|YP_006864082.1|	-	2.4e-25	88.3	0.6	3e-25	88.0	0.6	1.1	1	0	0	1	1	1	1	Cytidine	and	deoxycytidylate	deaminase	zinc-binding	region
MafB19-deam	PF14437.6	gi|408406098|ref|YP_006864082.1|	-	4e-17	62.3	0.0	5e-17	61.9	0.0	1.1	1	0	0	1	1	1	1	MafB19-like	deaminase
SNAD4	PF18750.1	gi|408406098|ref|YP_006864082.1|	-	0.057	13.5	0.2	0.096	12.8	0.2	1.4	1	0	0	1	1	1	0	Secreted	Novel	AID/APOBEC-like	Deaminase	4
APOBEC_N	PF08210.11	gi|408406098|ref|YP_006864082.1|	-	0.075	12.9	0.3	0.14	12.0	0.3	1.6	1	1	0	1	1	1	0	APOBEC-like	N-terminal	domain
NAD1	PF18778.1	gi|408406098|ref|YP_006864082.1|	-	0.11	12.5	0.2	0.17	12.0	0.2	1.3	1	0	0	1	1	1	0	Novel	AID	APOBEC	clade	1
DNA_pol_B_thumb	PF14791.6	gi|408406101|ref|YP_006864085.1|	-	1.4e-20	73.2	0.1	3.8e-20	71.8	0.1	1.8	1	0	0	1	1	1	1	DNA	polymerase	beta	thumb
HHH_8	PF14716.6	gi|408406101|ref|YP_006864085.1|	-	9.2e-16	58.0	1.3	7.3e-15	55.1	0.1	3.0	3	0	0	3	3	3	1	Helix-hairpin-helix	domain
HHH_5	PF14520.6	gi|408406101|ref|YP_006864085.1|	-	3.7e-10	40.2	0.7	1.2e-07	32.2	0.1	3.5	4	0	0	4	4	4	1	Helix-hairpin-helix	domain
PHP	PF02811.19	gi|408406101|ref|YP_006864085.1|	-	1.9e-07	31.5	0.0	4e-07	30.5	0.0	1.6	1	0	0	1	1	1	1	PHP	domain
DNA_pol_B_palm	PF14792.6	gi|408406101|ref|YP_006864085.1|	-	0.00044	20.4	0.0	0.0011	19.2	0.0	1.6	1	0	0	1	1	1	1	DNA	polymerase	beta	palm
HHH	PF00633.23	gi|408406101|ref|YP_006864085.1|	-	0.00062	19.5	0.6	0.0069	16.2	0.0	2.8	2	0	0	2	2	2	1	Helix-hairpin-helix	motif
HHH_2	PF12826.7	gi|408406101|ref|YP_006864085.1|	-	0.015	15.4	0.2	0.98	9.6	0.0	2.9	3	0	0	3	3	3	0	Helix-hairpin-helix	motif
DUF2795	PF11387.8	gi|408406101|ref|YP_006864085.1|	-	0.036	14.3	0.0	5.5	7.3	0.1	3.4	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2795)
DUF763	PF05559.11	gi|408406101|ref|YP_006864085.1|	-	0.071	12.3	0.0	0.13	11.4	0.0	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF763)
Cdd1	PF11731.8	gi|408406101|ref|YP_006864085.1|	-	0.12	12.6	0.1	2.4	8.4	0.0	2.5	1	1	1	2	2	2	0	Pathogenicity	locus
AbrB	PF05145.12	gi|408406102|ref|YP_006864086.1|	-	0.066	12.1	4.3	0.13	11.2	4.3	1.5	1	1	0	1	1	1	0	Transition	state	regulatory	protein	AbrB
CENP-I	PF07778.11	gi|408406102|ref|YP_006864086.1|	-	0.17	10.6	1.7	0.23	10.2	1.7	1.1	1	0	0	1	1	1	0	Mis6
DUF202	PF02656.15	gi|408406102|ref|YP_006864086.1|	-	3.9	8.0	5.9	2.8	8.4	0.1	2.5	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF202)
Pyr_redox_2	PF07992.14	gi|408406103|ref|YP_006864087.1|	-	1.2e-21	77.2	0.0	6.7e-21	74.8	0.0	1.9	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox	PF00070.27	gi|408406103|ref|YP_006864087.1|	-	1.3e-06	28.8	0.1	0.033	14.7	0.1	2.7	2	1	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_binding_8	PF13450.6	gi|408406103|ref|YP_006864087.1|	-	0.00067	19.8	0.0	0.0014	18.8	0.0	1.5	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
NAD_binding_9	PF13454.6	gi|408406103|ref|YP_006864087.1|	-	0.0011	19.0	0.0	0.19	11.7	0.0	2.5	3	0	0	3	3	3	1	FAD-NAD(P)-binding
Pyr_redox_3	PF13738.6	gi|408406103|ref|YP_006864087.1|	-	0.0013	18.1	0.0	0.79	8.9	0.0	2.5	2	1	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_binding_2	PF00890.24	gi|408406103|ref|YP_006864087.1|	-	0.0061	15.7	0.0	0.033	13.3	0.0	2.1	2	1	0	2	2	2	1	FAD	binding	domain
Sacchrp_dh_NADP	PF03435.18	gi|408406103|ref|YP_006864087.1|	-	0.008	16.4	0.0	0.023	14.9	0.0	1.8	2	0	0	2	2	2	1	Saccharopine	dehydrogenase	NADP	binding	domain
DAO	PF01266.24	gi|408406103|ref|YP_006864087.1|	-	0.011	15.3	0.0	0.15	11.6	0.0	2.1	2	0	0	2	2	2	0	FAD	dependent	oxidoreductase
HI0933_like	PF03486.14	gi|408406103|ref|YP_006864087.1|	-	0.019	13.7	0.0	2	7.1	0.0	2.9	3	0	0	3	3	3	0	HI0933-like	protein
Thi4	PF01946.17	gi|408406103|ref|YP_006864087.1|	-	0.067	12.4	0.0	0.12	11.6	0.0	1.4	1	0	0	1	1	1	0	Thi4	family
Trp_halogenase	PF04820.14	gi|408406103|ref|YP_006864087.1|	-	0.11	11.3	0.0	1.1	8.0	0.0	2.0	2	0	0	2	2	2	0	Tryptophan	halogenase
adh_short	PF00106.25	gi|408406105|ref|YP_006864089.1|	-	5.5e-64	215.2	2.1	7.5e-64	214.8	2.1	1.2	1	0	0	1	1	1	1	short	chain	dehydrogenase
adh_short_C2	PF13561.6	gi|408406105|ref|YP_006864089.1|	-	1.5e-47	162.2	2.5	1.8e-47	161.9	2.5	1.0	1	0	0	1	1	1	1	Enoyl-(Acyl	carrier	protein)	reductase
KR	PF08659.10	gi|408406105|ref|YP_006864089.1|	-	7.2e-13	48.8	0.8	1.1e-12	48.3	0.5	1.4	1	1	0	1	1	1	1	KR	domain
Epimerase	PF01370.21	gi|408406105|ref|YP_006864089.1|	-	0.00019	20.9	0.7	0.015	14.8	0.7	2.6	1	1	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
THF_DHG_CYH_C	PF02882.19	gi|408406105|ref|YP_006864089.1|	-	0.021	14.1	0.6	0.087	12.1	0.0	2.2	2	1	1	3	3	3	0	Tetrahydrofolate	dehydrogenase/cyclohydrolase,	NAD(P)-binding	domain
NAD_binding_10	PF13460.6	gi|408406105|ref|YP_006864089.1|	-	0.039	13.8	1.8	0.069	13.0	1.8	1.4	1	1	0	1	1	1	0	NAD(P)H-binding
Wax2_C	PF12076.8	gi|408406105|ref|YP_006864089.1|	-	0.092	12.5	0.0	0.2	11.4	0.0	1.5	1	0	0	1	1	1	0	WAX2	C-terminal	domain
Acyl_transf_3	PF01757.22	gi|408406107|ref|YP_006864091.1|	-	0.00075	18.7	1.4	0.00081	18.5	1.4	1.0	1	0	0	1	1	1	1	Acyltransferase	family
VPDSG-CTERM	PF18205.1	gi|408406107|ref|YP_006864091.1|	-	0.023	14.5	0.5	0.042	13.7	0.5	1.5	1	0	0	1	1	1	0	VPDSG-CTERM	motif
DUF2628	PF10947.8	gi|408406107|ref|YP_006864091.1|	-	0.029	14.7	0.7	0.035	14.5	0.7	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2628)
YrhC	PF14143.6	gi|408406107|ref|YP_006864091.1|	-	0.065	13.3	2.9	0.24	11.5	0.8	2.0	2	0	0	2	2	2	0	YrhC-like	protein
CreD	PF06123.12	gi|408406107|ref|YP_006864091.1|	-	0.16	10.7	2.8	0.18	10.6	2.8	1.0	1	0	0	1	1	1	0	Inner	membrane	protein	CreD
YajC	PF02699.15	gi|408406107|ref|YP_006864091.1|	-	0.31	11.0	0.3	0.31	11.0	0.3	2.0	3	0	0	3	3	3	0	Preprotein	translocase	subunit
RseC_MucC	PF04246.12	gi|408406107|ref|YP_006864091.1|	-	0.41	10.6	2.2	0.48	10.4	1.7	1.4	1	1	0	1	1	1	0	Positive	regulator	of	sigma(E),	RseC/MucC
Gln-synt_C	PF00120.24	gi|408406109|ref|YP_006864093.1|	-	2e-119	398.7	0.0	2.3e-119	398.4	0.0	1.0	1	0	0	1	1	1	1	Glutamine	synthetase,	catalytic	domain
Gln-synt_N	PF03951.19	gi|408406109|ref|YP_006864093.1|	-	5.2e-26	90.2	0.0	3.2e-25	87.7	0.0	2.2	2	0	0	2	2	2	1	Glutamine	synthetase,	beta-Grasp	domain
Cation_efflux	PF01545.21	gi|408406110|ref|YP_006864094.1|	-	0.056	13.2	6.4	0.11	12.2	6.4	1.4	1	1	0	1	1	1	0	Cation	efflux	family
DUF1700	PF08006.11	gi|408406110|ref|YP_006864094.1|	-	1.1	8.8	5.1	0.63	9.5	1.8	1.9	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF1700)
Rotamase_3	PF13616.6	gi|408406113|ref|YP_006864097.1|	-	1e-26	93.8	0.0	1.6e-26	93.1	0.0	1.3	1	1	0	1	1	1	1	PPIC-type	PPIASE	domain
Rotamase	PF00639.21	gi|408406113|ref|YP_006864097.1|	-	4.3e-24	85.3	0.0	5.2e-24	85.0	0.0	1.1	1	0	0	1	1	1	1	PPIC-type	PPIASE	domain
Rotamase_2	PF13145.6	gi|408406113|ref|YP_006864097.1|	-	2e-09	38.4	0.0	2.3e-09	38.1	0.0	1.1	1	0	0	1	1	1	1	PPIC-type	PPIASE	domain
HTH_38	PF13936.6	gi|408406113|ref|YP_006864097.1|	-	0.065	13.0	0.1	0.092	12.5	0.1	1.3	1	0	0	1	1	1	0	Helix-turn-helix	domain
Get5_C	PF18514.1	gi|408406113|ref|YP_006864097.1|	-	0.11	12.2	0.0	0.19	11.5	0.0	1.4	1	0	0	1	1	1	0	Get5	C-terminal	domain
TOC159_MAD	PF11886.8	gi|408406114|ref|YP_006864098.1|	-	0.017	14.0	0.4	0.029	13.3	0.4	1.4	1	0	0	1	1	1	0	Translocase	of	chloroplast	159/132,	membrane	anchor	domain
MS_channel	PF00924.18	gi|408406116|ref|YP_006864100.1|	-	8e-14	51.7	4.2	8e-14	51.7	4.2	1.6	2	0	0	2	2	2	1	Mechanosensitive	ion	channel
Pico_P2B	PF01552.17	gi|408406116|ref|YP_006864100.1|	-	0.066	13.4	5.9	0.048	13.8	1.9	2.3	2	1	0	2	2	2	0	Picornavirus	2B	protein
DUF1980	PF09323.10	gi|408406116|ref|YP_006864100.1|	-	0.077	12.9	0.5	0.083	12.8	0.5	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1980)
DUF5397	PF17375.2	gi|408406116|ref|YP_006864100.1|	-	0.088	12.5	0.0	0.17	11.6	0.0	1.4	1	0	0	1	1	1	0	Family	of	unknown	function	(DUF5397)
DUF2516	PF10724.9	gi|408406116|ref|YP_006864100.1|	-	8.1	6.8	9.8	57	4.1	2.1	2.6	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF2516)
HD_4	PF13328.6	gi|408406117|ref|YP_006864101.1|	-	1.1e-14	54.4	3.0	3.5e-13	49.6	3.0	2.0	1	1	0	1	1	1	1	HD	domain
HD	PF01966.22	gi|408406117|ref|YP_006864101.1|	-	0.0008	19.6	1.7	0.0015	18.8	1.5	1.6	1	1	0	1	1	1	1	HD	domain
Spherulin4	PF12138.8	gi|408406118|ref|YP_006864102.1|	-	2.5e-37	128.8	3.2	2.5e-37	128.8	3.2	2.9	2	2	0	2	2	2	1	Spherulation-specific	family	4
Big_1	PF02369.16	gi|408406118|ref|YP_006864102.1|	-	0.065	13.2	15.5	1.1	9.4	0.1	4.3	4	0	0	4	4	4	0	Bacterial	Ig-like	domain	(group	1)
ID	PF18543.1	gi|408406118|ref|YP_006864102.1|	-	0.14	12.2	2.7	19	5.4	0.1	3.2	3	0	0	3	3	3	0	Intracellular	delivery	domain
PEGA	PF08308.11	gi|408406118|ref|YP_006864102.1|	-	1	9.3	12.9	1.1	9.2	0.0	4.7	4	2	1	5	5	5	0	PEGA	domain
DUF824	PF05688.11	gi|408406118|ref|YP_006864102.1|	-	3.6	7.5	5.4	7.8	6.4	0.1	3.2	4	0	0	4	4	4	0	Salmonella	repeat	of	unknown	function	(DUF824)
TNFR_16_TM	PF18422.1	gi|408406119|ref|YP_006864103.1|	-	2.5	8.1	6.2	1.3	9.0	0.4	2.6	2	1	0	2	2	2	0	Tumor	necrosis	factor	receptor	member	16	trans-membrane	domain
DnaJ	PF00226.31	gi|408406120|ref|YP_006864104.1|	-	5.4e-24	84.1	1.3	8.2e-24	83.5	1.3	1.3	1	0	0	1	1	1	1	DnaJ	domain
Fer4_13	PF13370.6	gi|408406120|ref|YP_006864104.1|	-	2e-06	28.2	3.3	5.6e-06	26.8	3.3	1.8	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain	of	Ferredoxin	I
Fer4_19	PF06902.11	gi|408406120|ref|YP_006864104.1|	-	0.00026	21.0	0.9	0.00058	19.9	0.9	1.6	1	0	0	1	1	1	1	Divergent	4Fe-4S	mono-cluster
Fer4_15	PF13459.6	gi|408406120|ref|YP_006864104.1|	-	0.00063	20.4	4.3	0.0032	18.2	4.3	2.1	1	1	0	1	1	1	1	4Fe-4S	single	cluster	domain
Trypan_PARP	PF05887.11	gi|408406120|ref|YP_006864104.1|	-	0.037	14.0	2.3	0.059	13.3	2.3	1.3	1	0	0	1	1	1	0	Procyclic	acidic	repetitive	protein	(PARP)
TP_methylase	PF00590.20	gi|408406121|ref|YP_006864105.1|	-	8.7e-54	182.7	0.1	9.9e-54	182.5	0.1	1.0	1	0	0	1	1	1	1	Tetrapyrrole	(Corrin/Porphyrin)	Methylases
TP_methylase	PF00590.20	gi|408406122|ref|YP_006864106.1|	-	2.1e-47	161.8	0.5	2.9e-47	161.3	0.5	1.2	1	0	0	1	1	1	1	Tetrapyrrole	(Corrin/Porphyrin)	Methylases
Snf7	PF03357.21	gi|408406123|ref|YP_006864107.1|	-	0.0031	17.1	0.9	0.0031	17.1	0.9	1.7	2	0	0	2	2	2	1	Snf7
GHMP_kinases_C	PF08544.13	gi|408406123|ref|YP_006864107.1|	-	0.013	15.8	0.2	0.15	12.5	0.1	2.3	2	0	0	2	2	2	0	GHMP	kinases	C	terminal
Phage_int_SAM_2	PF12834.7	gi|408406123|ref|YP_006864107.1|	-	0.016	15.9	0.2	0.86	10.3	0.2	2.4	2	1	0	2	2	2	0	Phage	integrase,	N-terminal
DASH_Duo1	PF08651.10	gi|408406123|ref|YP_006864107.1|	-	0.032	14.0	1.3	0.095	12.5	0.1	2.4	2	1	1	3	3	3	0	DASH	complex	subunit	Duo1
CENP-F_leu_zip	PF10473.9	gi|408406123|ref|YP_006864107.1|	-	0.074	13.1	1.4	0.16	12.0	1.3	1.7	1	1	0	1	1	1	0	Leucine-rich	repeats	of	kinetochore	protein	Cenp-F/LEK1
FUSC	PF04632.12	gi|408406123|ref|YP_006864107.1|	-	0.088	11.3	0.6	0.1	11.1	0.6	1.0	1	0	0	1	1	1	0	Fusaric	acid	resistance	protein	family
AAA_13	PF13166.6	gi|408406123|ref|YP_006864107.1|	-	0.13	10.9	0.3	0.16	10.5	0.3	1.1	1	0	0	1	1	1	0	AAA	domain
BLOC1S3	PF15753.5	gi|408406123|ref|YP_006864107.1|	-	0.14	12.3	1.8	0.26	11.4	1.6	1.6	1	1	0	1	1	1	0	Biogenesis	of	lysosome-related	organelles	complex	1	subunit	3
Glyoxalase_2	PF12681.7	gi|408406126|ref|YP_006864110.1|	-	1.1e-14	54.4	0.0	1.6e-14	53.8	0.0	1.2	1	0	0	1	1	1	1	Glyoxalase-like	domain
Glyoxalase	PF00903.25	gi|408406126|ref|YP_006864110.1|	-	1.3e-14	54.5	0.0	1.7e-14	54.1	0.0	1.1	1	0	0	1	1	1	1	Glyoxalase/Bleomycin	resistance	protein/Dioxygenase	superfamily
Glyoxalase_6	PF18029.1	gi|408406126|ref|YP_006864110.1|	-	0.0028	18.4	0.0	0.0044	17.8	0.0	1.3	1	1	0	1	1	1	1	Glyoxalase-like	domain
Glyoxalase_4	PF13669.6	gi|408406126|ref|YP_006864110.1|	-	0.04	14.2	0.0	2	8.7	0.0	2.1	1	1	0	1	1	1	0	Glyoxalase/Bleomycin	resistance	protein/Dioxygenase	superfamily
DUF1264	PF06884.11	gi|408406129|ref|YP_006864113.1|	-	1e-20	74.0	0.0	1.2e-20	73.7	0.0	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1264)
PIRT	PF15099.6	gi|408406130|ref|YP_006864114.1|	-	0.11	12.1	0.1	0.12	12.0	0.1	1.1	1	0	0	1	1	1	0	Phosphoinositide-interacting	protein	family
SKG6	PF08693.10	gi|408406130|ref|YP_006864114.1|	-	1.2	8.6	9.0	0.48	9.9	3.4	2.3	2	0	0	2	2	2	0	Transmembrane	alpha-helix	domain
DUF2207	PF09972.9	gi|408406133|ref|YP_006864117.1|	-	0.021	13.6	3.2	0.024	13.4	3.2	1.0	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2207)
DUF3270	PF11674.8	gi|408406133|ref|YP_006864117.1|	-	0.028	14.6	3.6	0.035	14.3	3.6	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3270)
FA_desaturase	PF00487.24	gi|408406133|ref|YP_006864117.1|	-	0.051	13.4	1.8	0.057	13.3	1.8	1.0	1	0	0	1	1	1	0	Fatty	acid	desaturase
TMEM154	PF15102.6	gi|408406133|ref|YP_006864117.1|	-	0.087	12.7	3.1	1.5	8.7	0.4	2.0	1	1	1	2	2	2	0	TMEM154	protein	family
SdpI	PF13630.6	gi|408406133|ref|YP_006864117.1|	-	0.1	12.8	4.7	0.15	12.3	4.7	1.2	1	0	0	1	1	1	0	SdpI/YhfL	protein	family
S_4TM	PF18159.1	gi|408406133|ref|YP_006864117.1|	-	0.12	11.7	2.5	0.13	11.5	2.5	1.0	1	0	0	1	1	1	0	SMODS-associating	4TM	effector	domain
Protocadherin	PF08374.11	gi|408406133|ref|YP_006864117.1|	-	0.69	9.9	1.5	0.91	9.5	0.0	1.7	1	1	1	2	2	2	0	Protocadherin
Vpu	PF00558.19	gi|408406133|ref|YP_006864117.1|	-	2.8	7.8	8.2	9	6.2	8.2	1.8	1	1	0	1	1	1	0	Vpu	protein
DUF3892	PF13031.6	gi|408406134|ref|YP_006864118.1|	-	2.6e-06	27.9	0.7	4.9e-06	27.1	0.7	1.4	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF3892)
CarD_CdnL_TRCF	PF02559.16	gi|408406134|ref|YP_006864118.1|	-	0.0092	16.7	0.8	0.035	14.8	0.8	1.9	1	1	0	1	1	1	1	CarD-like/TRCF	domain
MgtC	PF02308.16	gi|408406135|ref|YP_006864119.1|	-	6.5e-33	113.7	6.1	7.8e-33	113.4	6.1	1.0	1	0	0	1	1	1	1	MgtC	family
DUF4536	PF15055.6	gi|408406135|ref|YP_006864119.1|	-	0.11	12.7	2.6	0.13	12.5	0.6	2.2	2	2	0	2	2	2	0	Domain	of	unknown	function	(DUF4536)
PrgI	PF12666.7	gi|408406135|ref|YP_006864119.1|	-	1.3	9.8	4.8	3.4	8.5	0.9	2.2	1	1	1	2	2	2	0	PrgI	family	protein
AsnC_trans_reg	PF01037.21	gi|408406136|ref|YP_006864120.1|	-	2.7e-14	52.9	0.1	3.3e-14	52.6	0.1	1.1	1	0	0	1	1	1	1	Lrp/AsnC	ligand	binding	domain
NapD	PF03927.13	gi|408406136|ref|YP_006864120.1|	-	0.0088	16.1	0.1	0.013	15.6	0.1	1.2	1	0	0	1	1	1	1	NapD	protein
GYD	PF08734.11	gi|408406136|ref|YP_006864120.1|	-	0.014	15.4	0.0	0.017	15.1	0.0	1.2	1	0	0	1	1	1	0	GYD	domain
Arf	PF00025.21	gi|408406136|ref|YP_006864120.1|	-	0.025	14.0	0.1	0.03	13.8	0.1	1.0	1	0	0	1	1	1	0	ADP-ribosylation	factor	family
Asp_Glu_race	PF01177.22	gi|408406137|ref|YP_006864121.1|	-	5.4e-22	78.7	0.0	7.1e-22	78.4	0.0	1.2	1	0	0	1	1	1	1	Asp/Glu/Hydantoin	racemase
Prenyltransf	PF01255.19	gi|408406138|ref|YP_006864122.1|	-	2e-71	240.1	0.1	2.3e-71	239.9	0.1	1.0	1	0	0	1	1	1	1	Putative	undecaprenyl	diphosphate	synthase
PepSY	PF03413.19	gi|408406139|ref|YP_006864123.1|	-	2e-07	31.4	0.0	0.00042	20.8	0.0	3.0	3	0	0	3	3	3	2	Peptidase	propeptide	and	YPEB	domain
Filamin	PF00630.19	gi|408406140|ref|YP_006864124.1|	-	0.0039	18.0	1.8	0.76	10.6	0.1	3.0	3	0	0	3	3	3	1	Filamin/ABP280	repeat
Pox_G9-A16	PF03003.16	gi|408406140|ref|YP_006864124.1|	-	0.0042	16.8	0.0	6.8	6.4	0.0	3.7	2	1	2	4	4	4	1	Pox	virus	entry-fusion-complex	G9/A16
DUF5643	PF18705.1	gi|408406140|ref|YP_006864124.1|	-	0.048	13.6	1.6	4	7.5	0.0	3.2	3	0	0	3	3	3	0	Family	of	unknown	function	(DUF5643)
DUF2589	PF11655.8	gi|408406140|ref|YP_006864124.1|	-	0.1	12.9	4.1	3.3	8.0	0.1	2.9	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF2589)
DUF3324	PF11797.8	gi|408406140|ref|YP_006864124.1|	-	0.14	12.1	0.0	8.9	6.3	0.0	2.9	3	0	0	3	3	3	0	Protein	of	unknown	function	C-terminal	(DUF3324)
GSDH	PF07995.11	gi|408406142|ref|YP_006864126.1|	-	1.4e-47	162.6	0.0	1.8e-47	162.3	0.0	1.1	1	0	0	1	1	1	1	Glucose	/	Sorbosone	dehydrogenase
PQQ_3	PF13570.6	gi|408406142|ref|YP_006864126.1|	-	0.048	14.2	0.4	19	5.9	0.1	3.1	2	0	0	2	2	2	0	PQQ-like	domain
DUF4083	PF13314.6	gi|408406143|ref|YP_006864127.1|	-	0.54	10.2	3.8	0.34	10.9	0.7	2.1	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4083)
PBP_like_2	PF12849.7	gi|408406144|ref|YP_006864128.1|	-	4.5e-23	82.3	0.3	7.5e-23	81.6	0.3	1.3	1	0	0	1	1	1	1	PBP	superfamily	domain
Phage_GPL	PF05926.11	gi|408406144|ref|YP_006864128.1|	-	0.12	12.4	0.0	0.25	11.3	0.0	1.5	1	0	0	1	1	1	0	Phage	head	completion	protein	(GPL)
DUF4221	PF13970.6	gi|408406147|ref|YP_006864131.1|	-	0.0068	16.0	1.7	0.0077	15.8	1.7	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4221)
DUF4367	PF14285.6	gi|408406148|ref|YP_006864132.1|	-	0.054	13.9	0.7	0.11	13.0	0.7	1.6	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4367)
Neisseria_TspB	PF05616.13	gi|408406148|ref|YP_006864132.1|	-	0.13	10.7	0.0	0.14	10.6	0.0	1.0	1	0	0	1	1	1	0	Neisseria	meningitidis	TspB	protein
NAD_synthase	PF02540.17	gi|408406149|ref|YP_006864133.1|	-	7e-76	254.5	0.0	8e-76	254.3	0.0	1.0	1	0	0	1	1	1	1	NAD	synthase
tRNA_Me_trans	PF03054.16	gi|408406149|ref|YP_006864133.1|	-	8.5e-06	24.8	0.0	0.0058	15.5	0.0	2.3	2	0	0	2	2	2	2	tRNA	methyl	transferase
Asn_synthase	PF00733.21	gi|408406149|ref|YP_006864133.1|	-	2.8e-05	23.9	0.0	5.2e-05	23.1	0.0	1.4	1	0	0	1	1	1	1	Asparagine	synthase
QueC	PF06508.13	gi|408406149|ref|YP_006864133.1|	-	0.00084	18.9	0.0	0.0022	17.5	0.0	1.6	2	0	0	2	2	2	1	Queuosine	biosynthesis	protein	QueC
HTH_23	PF13384.6	gi|408406149|ref|YP_006864133.1|	-	0.018	14.8	0.0	0.23	11.3	0.0	2.6	3	0	0	3	3	3	0	Homeodomain-like	domain
ATP_bind_3	PF01171.20	gi|408406149|ref|YP_006864133.1|	-	0.15	11.8	0.0	0.29	10.8	0.0	1.5	2	0	0	2	2	2	0	PP-loop	family
PAPS_reduct	PF01507.19	gi|408406149|ref|YP_006864133.1|	-	0.2	11.7	0.0	0.45	10.5	0.0	1.7	2	0	0	2	2	2	0	Phosphoadenosine	phosphosulfate	reductase	family
DUF4242	PF14026.6	gi|408406150|ref|YP_006864134.1|	-	4.9e-10	39.5	0.0	6.9e-10	39.0	0.0	1.3	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF4242)
PLDc_2	PF13091.6	gi|408406151|ref|YP_006864135.1|	-	0.0011	18.8	0.3	0.022	14.6	0.2	2.3	2	0	0	2	2	2	1	PLD-like	domain
DUF3069	PF11269.8	gi|408406151|ref|YP_006864135.1|	-	0.15	12.4	0.9	29	5.0	0.3	3.0	2	1	1	3	3	3	0	Protein	of	unknown	function	(DUF3069)
Arc_trans_TRASH	PF08394.10	gi|408406152|ref|YP_006864136.1|	-	0.0092	16.3	0.2	0.014	15.8	0.2	1.3	1	0	0	1	1	1	1	Archaeal	TRASH	domain
ATPase	PF06745.13	gi|408406153|ref|YP_006864137.1|	-	3.2e-15	56.1	0.0	6e-15	55.2	0.0	1.3	1	0	0	1	1	1	1	KaiC
GvpD	PF07088.11	gi|408406153|ref|YP_006864137.1|	-	2.3e-06	26.5	0.0	3.7e-06	25.9	0.0	1.3	1	0	0	1	1	1	1	GvpD	gas	vesicle	protein
Guanylate_cyc	PF00211.20	gi|408406153|ref|YP_006864137.1|	-	1.1e-05	25.2	0.0	2.1e-05	24.2	0.0	1.5	1	0	0	1	1	1	1	Adenylate	and	Guanylate	cyclase	catalytic	domain
VATC	PF18716.1	gi|408406153|ref|YP_006864137.1|	-	0.00017	21.3	0.0	0.00033	20.5	0.0	1.4	1	0	0	1	1	1	1	Vms1-associating	treble	clef	domain
PAXNEB	PF05625.11	gi|408406153|ref|YP_006864137.1|	-	0.0003	20.0	0.1	0.0011	18.2	0.1	1.7	1	1	1	2	2	2	1	PAXNEB	protein
MEDS	PF14417.6	gi|408406153|ref|YP_006864137.1|	-	0.00058	19.7	0.0	0.001	18.9	0.0	1.3	1	0	0	1	1	1	1	MEDS:	MEthanogen/methylotroph,	DcmR	Sensory	domain
AAA_16	PF13191.6	gi|408406153|ref|YP_006864137.1|	-	0.0017	18.8	0.1	0.0034	17.8	0.1	1.5	1	0	0	1	1	1	1	AAA	ATPase	domain
AAA_22	PF13401.6	gi|408406153|ref|YP_006864137.1|	-	0.0028	17.9	0.1	0.0077	16.5	0.1	1.9	1	1	0	1	1	1	1	AAA	domain
AAA_25	PF13481.6	gi|408406153|ref|YP_006864137.1|	-	0.01	15.4	0.2	0.061	12.9	0.2	2.2	1	1	0	1	1	1	0	AAA	domain
AAA	PF00004.29	gi|408406153|ref|YP_006864137.1|	-	0.037	14.5	0.0	0.092	13.2	0.0	1.7	2	0	0	2	2	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_7	PF12775.7	gi|408406153|ref|YP_006864137.1|	-	0.04	13.4	0.0	0.073	12.6	0.0	1.4	1	0	0	1	1	1	0	P-loop	containing	dynein	motor	region
ATPase_2	PF01637.18	gi|408406153|ref|YP_006864137.1|	-	0.042	13.8	0.0	0.066	13.1	0.0	1.2	1	0	0	1	1	1	0	ATPase	domain	predominantly	from	Archaea
AAA_30	PF13604.6	gi|408406153|ref|YP_006864137.1|	-	0.091	12.5	0.0	0.18	11.5	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
AAA_18	PF13238.6	gi|408406153|ref|YP_006864137.1|	-	0.15	12.6	0.1	0.49	11.0	0.1	1.9	1	1	0	1	1	1	0	AAA	domain
TsaE	PF02367.17	gi|408406153|ref|YP_006864137.1|	-	0.21	11.6	0.1	0.4	10.7	0.1	1.4	1	0	0	1	1	1	0	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
AAA_31	PF13614.6	gi|408406154|ref|YP_006864138.1|	-	1.7e-18	67.2	0.4	1.4e-17	64.2	0.4	2.1	1	1	0	1	1	1	1	AAA	domain
CbiA	PF01656.23	gi|408406154|ref|YP_006864138.1|	-	3.3e-14	53.0	0.0	5e-14	52.5	0.0	1.3	1	0	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
ParA	PF10609.9	gi|408406154|ref|YP_006864138.1|	-	2e-13	50.4	0.0	1.9e-11	43.9	0.0	2.9	3	0	0	3	3	3	1	NUBPL	iron-transfer	P-loop	NTPase
MipZ	PF09140.11	gi|408406154|ref|YP_006864138.1|	-	7.4e-09	35.3	0.0	1.7e-07	30.8	0.0	2.1	2	0	0	2	2	2	1	ATPase	MipZ
ArsA_ATPase	PF02374.15	gi|408406154|ref|YP_006864138.1|	-	7.2e-07	28.7	0.0	1.3e-06	27.8	0.0	1.4	1	0	0	1	1	1	1	Anion-transporting	ATPase
Fer4_NifH	PF00142.18	gi|408406154|ref|YP_006864138.1|	-	3.7e-06	26.6	0.0	0.00088	18.8	0.0	2.2	2	0	0	2	2	2	2	4Fe-4S	iron	sulfur	cluster	binding	proteins,	NifH/frxC	family
VirC1	PF07015.11	gi|408406154|ref|YP_006864138.1|	-	9e-05	21.9	0.0	0.0002	20.7	0.0	1.6	2	0	0	2	2	2	1	VirC1	protein
CBP_BcsQ	PF06564.12	gi|408406154|ref|YP_006864138.1|	-	0.00059	19.4	0.0	0.0019	17.7	0.0	1.7	2	0	0	2	2	2	1	Cellulose	biosynthesis	protein	BcsQ
ATP_bind_1	PF03029.17	gi|408406154|ref|YP_006864138.1|	-	0.005	16.7	0.0	0.015	15.1	0.0	1.7	1	1	0	1	1	1	1	Conserved	hypothetical	ATP	binding	protein
CLP1_P	PF16575.5	gi|408406154|ref|YP_006864138.1|	-	0.0054	16.6	0.0	0.012	15.4	0.0	1.6	2	0	0	2	2	2	1	mRNA	cleavage	and	polyadenylation	factor	CLP1	P-loop
SRP54	PF00448.22	gi|408406154|ref|YP_006864138.1|	-	0.0064	16.1	0.1	0.021	14.4	0.0	1.8	2	0	0	2	2	2	1	SRP54-type	protein,	GTPase	domain
APS_kinase	PF01583.20	gi|408406154|ref|YP_006864138.1|	-	0.011	15.7	0.0	0.019	14.8	0.0	1.3	1	0	0	1	1	1	0	Adenylylsulphate	kinase
AAA_25	PF13481.6	gi|408406154|ref|YP_006864138.1|	-	0.068	12.7	0.1	0.21	11.2	0.1	1.7	2	0	0	2	2	2	0	AAA	domain
MobB	PF03205.14	gi|408406154|ref|YP_006864138.1|	-	0.12	12.2	0.0	0.28	11.1	0.0	1.5	1	0	0	1	1	1	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
GW	PF13457.6	gi|408406155|ref|YP_006864139.1|	-	0.0035	17.9	0.1	0.84	10.3	0.0	2.5	2	0	0	2	2	2	2	GW	(Gly-Tryp)	dipeptide	domain
TGT	PF01702.18	gi|408406155|ref|YP_006864139.1|	-	0.084	12.0	0.0	0.12	11.5	0.0	1.3	1	0	0	1	1	1	0	Queuine	tRNA-ribosyltransferase
Hint_2	PF13403.6	gi|408406155|ref|YP_006864139.1|	-	0.086	13.1	0.0	0.13	12.6	0.0	1.2	1	0	0	1	1	1	0	Hint	domain
MMPL	PF03176.15	gi|408406156|ref|YP_006864140.1|	-	1.1	8.1	13.3	2.6	6.9	13.3	1.6	1	0	0	1	1	1	0	MMPL	family
APS_kinase	PF01583.20	gi|408406157|ref|YP_006864141.1|	-	1.7e-19	70.3	0.2	2e-19	70.0	0.2	1.0	1	0	0	1	1	1	1	Adenylylsulphate	kinase
N6_N4_Mtase	PF01555.18	gi|408406158|ref|YP_006864142.1|	-	1.6e-23	83.6	0.1	1.5e-15	57.6	0.0	2.1	2	0	0	2	2	2	2	DNA	methylase
Dev_Cell_Death	PF10539.9	gi|408406158|ref|YP_006864142.1|	-	1.3e-18	67.1	0.0	2.1e-18	66.4	0.0	1.3	1	0	0	1	1	1	1	Development	and	cell	death	domain
Methyltransf_11	PF08241.12	gi|408406158|ref|YP_006864142.1|	-	3.5e-06	27.6	0.1	9.1e-05	23.0	0.1	2.6	1	1	0	1	1	1	1	Methyltransferase	domain
UPF0020	PF01170.18	gi|408406158|ref|YP_006864142.1|	-	1.9e-05	24.4	0.1	0.038	13.7	0.0	2.3	2	0	0	2	2	2	2	Putative	RNA	methylase	family	UPF0020
Methyltransf_8	PF05148.15	gi|408406158|ref|YP_006864142.1|	-	0.0012	18.8	0.0	0.0045	16.9	0.0	1.9	2	0	0	2	2	2	1	Hypothetical	methyltransferase
Methyltransf_25	PF13649.6	gi|408406158|ref|YP_006864142.1|	-	0.0024	18.5	0.1	0.094	13.4	0.1	3.2	1	1	0	1	1	1	1	Methyltransferase	domain
BacA	PF02673.18	gi|408406159|ref|YP_006864143.1|	-	3.1e-68	230.3	14.7	3.5e-68	230.1	14.7	1.0	1	0	0	1	1	1	1	Bacitracin	resistance	protein	BacA
PhoU	PF01895.19	gi|408406160|ref|YP_006864144.1|	-	3.1e-21	75.6	14.2	2.4e-16	60.0	0.8	2.8	2	0	0	2	2	2	2	PhoU	domain
MazE_antitoxin	PF04014.18	gi|408406160|ref|YP_006864144.1|	-	0.00091	19.1	0.0	0.0027	17.6	0.0	1.8	1	0	0	1	1	1	1	Antidote-toxin	recognition	MazE,	bacterial	antitoxin
SpoIIID	PF12116.8	gi|408406160|ref|YP_006864144.1|	-	0.033	14.3	0.1	0.71	10.0	0.0	2.6	2	0	0	2	2	2	0	Stage	III	sporulation	protein	D
PhoU	PF01895.19	gi|408406161|ref|YP_006864145.1|	-	2.1e-06	28.1	0.1	3.8e-06	27.3	0.1	1.5	1	0	0	1	1	1	1	PhoU	domain
PBP_like_2	PF12849.7	gi|408406162|ref|YP_006864146.1|	-	1e-56	192.7	3.4	1.4e-56	192.2	3.4	1.2	1	0	0	1	1	1	1	PBP	superfamily	domain
SBP_bac_1	PF01547.25	gi|408406162|ref|YP_006864146.1|	-	6.6e-19	69.0	1.0	6.6e-19	69.0	1.0	1.7	2	0	0	2	2	2	1	Bacterial	extracellular	solute-binding	protein
PBP_like	PF12727.7	gi|408406162|ref|YP_006864146.1|	-	1.4e-09	37.3	0.0	4.7e-09	35.6	0.0	1.8	1	1	0	1	1	1	1	PBP	superfamily	domain
PBP_like_2	PF12849.7	gi|408406163|ref|YP_006864147.1|	-	4e-05	23.4	0.0	4.7e-05	23.2	0.0	1.0	1	0	0	1	1	1	1	PBP	superfamily	domain
SBP_bac_1	PF01547.25	gi|408406163|ref|YP_006864147.1|	-	0.033	14.2	0.0	0.048	13.6	0.0	1.3	1	1	0	1	1	1	0	Bacterial	extracellular	solute-binding	protein
PBP_like_2	PF12849.7	gi|408406164|ref|YP_006864148.1|	-	1e-12	48.4	0.0	1.2e-12	48.1	0.0	1.0	1	0	0	1	1	1	1	PBP	superfamily	domain
SBP_bac_1	PF01547.25	gi|408406164|ref|YP_006864148.1|	-	0.0038	17.2	0.0	0.0044	17.0	0.0	1.0	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
PBP_like_2	PF12849.7	gi|408406165|ref|YP_006864149.1|	-	3.8e-14	53.0	0.2	5.3e-14	52.6	0.2	1.2	1	0	0	1	1	1	1	PBP	superfamily	domain
zf-CHY	PF05495.12	gi|408406166|ref|YP_006864150.1|	-	0.00057	20.3	2.8	0.00076	19.9	2.8	1.2	1	0	0	1	1	1	1	CHY	zinc	finger
DZR	PF12773.7	gi|408406166|ref|YP_006864150.1|	-	0.0017	18.4	6.7	0.0033	17.4	6.2	1.7	1	1	0	1	1	1	1	Double	zinc	ribbon
zf-HIT	PF04438.16	gi|408406166|ref|YP_006864150.1|	-	0.007	16.2	5.0	0.011	15.5	1.3	2.3	2	0	0	2	2	2	1	HIT	zinc	finger
KNOX2	PF03791.13	gi|408406166|ref|YP_006864150.1|	-	0.032	13.7	0.1	0.045	13.3	0.1	1.2	1	0	0	1	1	1	0	KNOX2	domain
Flavi_propep	PF01570.17	gi|408406166|ref|YP_006864150.1|	-	0.033	14.1	3.5	0.17	11.8	0.4	2.0	1	1	1	2	2	2	0	Flavivirus	polyprotein	propeptide
zinc-ribbons_6	PF07191.12	gi|408406166|ref|YP_006864150.1|	-	0.043	13.8	7.1	0.059	13.4	5.5	1.9	1	1	0	1	1	1	0	zinc-ribbons
C1_2	PF03107.16	gi|408406166|ref|YP_006864150.1|	-	0.055	13.8	7.3	0.67	10.3	7.3	2.1	1	1	0	1	1	1	0	C1	domain
DUF2321	PF10083.9	gi|408406166|ref|YP_006864150.1|	-	0.18	11.4	4.2	0.82	9.3	4.1	1.8	1	1	1	2	2	2	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2321)
zinc_ribbon_2	PF13240.6	gi|408406166|ref|YP_006864150.1|	-	0.79	9.5	7.1	13	5.7	0.1	3.3	3	0	0	3	3	3	0	zinc-ribbon	domain
zf-ribbon_3	PF13248.6	gi|408406166|ref|YP_006864150.1|	-	1.2	8.6	0.0	1.2	8.6	0.0	3.1	2	1	1	3	3	3	0	zinc-ribbon	domain
PolC_DP2	PF03833.13	gi|408406166|ref|YP_006864150.1|	-	1.3	6.8	2.8	1.2	6.8	2.8	1.0	1	0	0	1	1	1	0	DNA	polymerase	II	large	subunit	DP2
PHD_3	PF13922.6	gi|408406166|ref|YP_006864150.1|	-	1.6	9.2	9.1	2.9	8.3	9.1	1.7	1	1	0	1	1	1	0	PHD	domain	of	transcriptional	enhancer,	Asx
HxlR	PF01638.17	gi|408406167|ref|YP_006864151.1|	-	4.7e-22	77.6	0.4	5.8e-22	77.4	0.4	1.1	1	0	0	1	1	1	1	HxlR-like	helix-turn-helix
HTH_34	PF13601.6	gi|408406167|ref|YP_006864151.1|	-	0.00021	21.4	0.0	0.00029	20.9	0.0	1.2	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
PadR	PF03551.14	gi|408406167|ref|YP_006864151.1|	-	0.0038	17.2	0.2	0.0053	16.7	0.2	1.3	1	0	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
HTH_20	PF12840.7	gi|408406167|ref|YP_006864151.1|	-	0.0097	15.9	0.0	0.015	15.3	0.0	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_24	PF13412.6	gi|408406167|ref|YP_006864151.1|	-	0.025	14.1	0.1	0.047	13.3	0.1	1.5	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
HTH_12	PF08461.10	gi|408406167|ref|YP_006864151.1|	-	0.044	13.7	0.3	0.13	12.2	0.1	2.0	1	1	2	3	3	3	0	Ribonuclease	R	winged-helix	domain
Replic_Relax	PF13814.6	gi|408406167|ref|YP_006864151.1|	-	0.057	13.5	0.0	0.073	13.1	0.0	1.2	1	0	0	1	1	1	0	Replication-relaxation
LexA_DNA_bind	PF01726.16	gi|408406167|ref|YP_006864151.1|	-	0.091	12.6	0.1	0.24	11.2	0.1	1.7	1	0	0	1	1	1	0	LexA	DNA	binding	domain
Zap1_zf2	PF18217.1	gi|408406167|ref|YP_006864151.1|	-	0.13	12.3	0.0	0.2	11.7	0.0	1.3	1	0	0	1	1	1	0	Zap1	zinc	finger	2
Methyltransf_31	PF13847.6	gi|408406168|ref|YP_006864152.1|	-	2.8e-31	108.4	0.1	3.5e-31	108.1	0.1	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.6	gi|408406168|ref|YP_006864152.1|	-	5.1e-22	78.4	0.1	9.1e-22	77.6	0.1	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_11	PF08241.12	gi|408406168|ref|YP_006864152.1|	-	1e-20	74.2	0.0	2.7e-20	72.8	0.0	1.7	1	0	0	1	1	1	1	Methyltransferase	domain
Ubie_methyltran	PF01209.18	gi|408406168|ref|YP_006864152.1|	-	2.9e-16	59.5	0.3	4.8e-16	58.8	0.3	1.3	1	0	0	1	1	1	1	ubiE/COQ5	methyltransferase	family
Methyltransf_12	PF08242.12	gi|408406168|ref|YP_006864152.1|	-	2.6e-11	44.1	0.0	4.8e-11	43.3	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.6	gi|408406168|ref|YP_006864152.1|	-	3e-11	43.4	0.0	6.6e-11	42.3	0.0	1.5	1	1	0	1	1	1	1	Methyltransferase	domain
PCMT	PF01135.19	gi|408406168|ref|YP_006864152.1|	-	3.5e-11	43.2	0.2	1.1e-10	41.6	0.2	1.7	1	1	0	1	1	1	1	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
PrmA	PF06325.13	gi|408406168|ref|YP_006864152.1|	-	4.2e-09	36.2	0.7	5.8e-09	35.7	0.7	1.2	1	0	0	1	1	1	1	Ribosomal	protein	L11	methyltransferase	(PrmA)
MTS	PF05175.14	gi|408406168|ref|YP_006864152.1|	-	1e-06	28.4	0.0	1.7e-06	27.7	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	small	domain
Methyltransf_8	PF05148.15	gi|408406168|ref|YP_006864152.1|	-	7.6e-06	25.9	0.2	1.7e-05	24.8	0.0	1.6	2	0	0	2	2	2	1	Hypothetical	methyltransferase
Methyltransf_32	PF13679.6	gi|408406168|ref|YP_006864152.1|	-	3.8e-05	23.7	0.0	6.5e-05	23.0	0.0	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_2	PF00891.18	gi|408406168|ref|YP_006864152.1|	-	6.5e-05	22.3	0.1	8.8e-05	21.9	0.1	1.3	1	0	0	1	1	1	1	O-methyltransferase	domain
DOT1	PF08123.13	gi|408406168|ref|YP_006864152.1|	-	0.00047	19.7	0.3	0.0017	17.9	0.3	1.8	1	1	0	1	1	1	1	Histone	methylation	protein	DOT1
CMAS	PF02353.20	gi|408406168|ref|YP_006864152.1|	-	0.00067	19.0	0.1	0.00088	18.7	0.1	1.2	1	0	0	1	1	1	1	Mycolic	acid	cyclopropane	synthetase
Methyltransf_24	PF13578.6	gi|408406168|ref|YP_006864152.1|	-	0.00075	20.5	0.0	0.0012	19.8	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_18	PF12847.7	gi|408406168|ref|YP_006864152.1|	-	0.005	16.8	0.0	0.02	14.8	0.0	1.9	2	0	0	2	2	2	1	Methyltransferase	domain
UPF0020	PF01170.18	gi|408406168|ref|YP_006864152.1|	-	0.0061	16.3	0.0	0.01	15.6	0.0	1.4	1	0	0	1	1	1	1	Putative	RNA	methylase	family	UPF0020
FtsJ	PF01728.19	gi|408406168|ref|YP_006864152.1|	-	0.0069	16.5	0.0	0.014	15.5	0.0	1.5	1	0	0	1	1	1	1	FtsJ-like	methyltransferase
ADH_zinc_N	PF00107.26	gi|408406168|ref|YP_006864152.1|	-	0.017	15.1	0.1	0.032	14.2	0.1	1.5	1	0	0	1	1	1	0	Zinc-binding	dehydrogenase
Methyltransf_9	PF08003.11	gi|408406168|ref|YP_006864152.1|	-	0.017	14.0	0.0	0.025	13.5	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1698)
Methyltransf_15	PF09445.10	gi|408406168|ref|YP_006864152.1|	-	0.018	14.6	0.1	0.024	14.2	0.1	1.2	1	0	0	1	1	1	0	RNA	cap	guanine-N2	methyltransferase
Methyltransf_4	PF02390.17	gi|408406168|ref|YP_006864152.1|	-	0.046	13.2	0.0	0.14	11.6	0.0	1.7	2	0	0	2	2	2	0	Putative	methyltransferase
Methyltransf_29	PF03141.16	gi|408406168|ref|YP_006864152.1|	-	0.13	10.8	0.0	0.17	10.4	0.0	1.1	1	0	0	1	1	1	0	Putative	S-adenosyl-L-methionine-dependent	methyltransferase
Methyltransf_16	PF10294.9	gi|408406168|ref|YP_006864152.1|	-	0.13	11.9	0.0	0.21	11.3	0.0	1.4	1	0	0	1	1	1	0	Lysine	methyltransferase
GARS_C	PF02843.16	gi|408406168|ref|YP_006864152.1|	-	0.14	12.5	0.2	0.55	10.5	0.1	2.0	1	1	1	2	2	2	0	Phosphoribosylglycinamide	synthetase,	C	domain
NNMT_PNMT_TEMT	PF01234.17	gi|408406168|ref|YP_006864152.1|	-	0.17	11.1	0.1	13	4.9	0.0	2.2	1	1	1	2	2	2	0	NNMT/PNMT/TEMT	family
LMWPc	PF01451.21	gi|408406169|ref|YP_006864153.1|	-	4.8e-21	75.6	0.1	3.8e-20	72.7	0.1	1.9	1	1	0	1	1	1	1	Low	molecular	weight	phosphotyrosine	protein	phosphatase
MIP	PF00230.20	gi|408406170|ref|YP_006864154.1|	-	9.1e-32	110.6	19.9	1.1e-31	110.4	19.9	1.0	1	0	0	1	1	1	1	Major	intrinsic	protein
Na_H_Exchanger	PF00999.21	gi|408406171|ref|YP_006864155.1|	-	2.8e-51	174.5	51.9	3.5e-51	174.2	51.9	1.0	1	0	0	1	1	1	1	Sodium/hydrogen	exchanger	family
SpoIIM	PF01944.17	gi|408406172|ref|YP_006864156.1|	-	7.8e-08	32.5	9.6	1.2e-07	31.9	9.6	1.2	1	0	0	1	1	1	1	Stage	II	sporulation	protein	M
DUF3810	PF12725.7	gi|408406172|ref|YP_006864156.1|	-	0.071	12.4	1.5	0.094	12.1	0.3	1.7	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3810)
HHV-5_US34A	PF17087.5	gi|408406172|ref|YP_006864156.1|	-	0.15	12.2	1.5	0.16	12.1	0.2	1.7	2	0	0	2	2	2	0	Herpesvirus	US34A	protein	family
DUF4761	PF15958.5	gi|408406173|ref|YP_006864157.1|	-	0.11	12.7	0.0	0.99	9.6	0.0	2.1	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4761)
TP_methylase	PF00590.20	gi|408406174|ref|YP_006864158.1|	-	4.9e-33	114.9	0.0	5.7e-33	114.7	0.0	1.1	1	0	0	1	1	1	1	Tetrapyrrole	(Corrin/Porphyrin)	Methylases
AsnC_trans_reg	PF01037.21	gi|408406175|ref|YP_006864159.1|	-	2.6e-09	36.9	0.3	2.8e-09	36.8	0.3	1.0	1	0	0	1	1	1	1	Lrp/AsnC	ligand	binding	domain
GYD	PF08734.11	gi|408406175|ref|YP_006864159.1|	-	0.008	16.1	0.1	0.0089	16.0	0.1	1.2	1	0	0	1	1	1	1	GYD	domain
LPD13	PF18825.1	gi|408406175|ref|YP_006864159.1|	-	0.011	15.5	0.7	0.014	15.1	0.5	1.3	1	1	0	1	1	1	0	Large	polyvalent	protein-associated	domain	13
NapD	PF03927.13	gi|408406175|ref|YP_006864159.1|	-	0.053	13.6	0.3	0.074	13.1	0.3	1.2	1	0	0	1	1	1	0	NapD	protein
Fer4	PF00037.27	gi|408406177|ref|YP_006864161.1|	-	4.1e-11	42.2	10.3	4.9e-07	29.3	0.7	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_7	PF12838.7	gi|408406177|ref|YP_006864161.1|	-	3.9e-09	37.0	3.6	5e-09	36.6	3.6	1.2	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_6	PF12837.7	gi|408406177|ref|YP_006864161.1|	-	6.1e-07	29.3	8.1	0.0012	18.8	0.6	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_21	PF14697.6	gi|408406177|ref|YP_006864161.1|	-	6.1e-07	29.5	4.6	9.5e-07	28.9	4.6	1.3	1	1	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_9	PF13187.6	gi|408406177|ref|YP_006864161.1|	-	2.6e-06	27.5	3.5	7.3e-06	26.1	3.6	1.6	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_2	PF12797.7	gi|408406177|ref|YP_006864161.1|	-	1.3e-05	25.0	7.6	0.016	15.3	1.6	2.3	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_13	PF13370.6	gi|408406177|ref|YP_006864161.1|	-	7.9e-05	23.1	5.0	0.071	13.7	0.5	2.3	2	0	0	2	2	2	2	4Fe-4S	single	cluster	domain	of	Ferredoxin	I
Fer4_10	PF13237.6	gi|408406177|ref|YP_006864161.1|	-	0.00011	22.2	8.5	0.0039	17.3	9.2	2.0	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_16	PF13484.6	gi|408406177|ref|YP_006864161.1|	-	0.00017	22.5	6.0	0.07	14.1	0.2	2.1	2	0	0	2	2	2	2	4Fe-4S	double	cluster	binding	domain
Fer4_4	PF12800.7	gi|408406177|ref|YP_006864161.1|	-	0.0005	20.4	6.7	0.17	12.5	1.8	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_8	PF13183.6	gi|408406177|ref|YP_006864161.1|	-	0.0017	18.8	5.3	0.016	15.6	5.4	2.0	1	1	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_22	PF17179.4	gi|408406177|ref|YP_006864161.1|	-	0.0018	19.1	2.6	0.48	11.3	0.4	2.1	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_3	PF12798.7	gi|408406177|ref|YP_006864161.1|	-	0.0037	18.1	12.1	0.28	12.2	4.3	2.3	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_15	PF13459.6	gi|408406177|ref|YP_006864161.1|	-	0.041	14.6	10.3	0.29	11.9	1.8	2.8	1	1	1	2	2	2	0	4Fe-4S	single	cluster	domain
Fer4_17	PF13534.6	gi|408406177|ref|YP_006864161.1|	-	0.053	14.1	7.5	2.4	8.8	7.5	2.1	1	1	0	1	1	1	0	4Fe-4S	dicluster	domain
AFP	PF02420.15	gi|408406177|ref|YP_006864161.1|	-	0.15	12.4	0.4	0.15	12.4	0.4	2.4	3	0	0	3	3	2	0	Insect	antifreeze	protein	repeat
Fer4_18	PF13746.6	gi|408406177|ref|YP_006864161.1|	-	0.83	9.9	10.3	2	8.6	3.0	2.1	1	1	0	2	2	2	0	4Fe-4S	dicluster	domain
DUF1743	PF08489.11	gi|408406178|ref|YP_006864162.1|	-	1.7e-37	128.0	0.0	2.9e-37	127.3	0.0	1.4	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1743)
Zn_ribbon_recom	PF13408.6	gi|408406178|ref|YP_006864162.1|	-	0.067	13.7	3.9	0.086	13.4	2.5	1.9	2	0	0	2	2	2	0	Recombinase	zinc	beta	ribbon	domain
DZR	PF12773.7	gi|408406178|ref|YP_006864162.1|	-	0.081	13.0	0.6	0.17	12.0	0.6	1.5	1	0	0	1	1	1	0	Double	zinc	ribbon
C1_1	PF00130.22	gi|408406178|ref|YP_006864162.1|	-	0.083	12.8	2.5	0.19	11.6	2.5	1.5	1	0	0	1	1	1	0	Phorbol	esters/diacylglycerol	binding	domain	(C1	domain)
HypA	PF01155.19	gi|408406178|ref|YP_006864162.1|	-	0.089	12.8	0.2	0.21	11.6	0.2	1.6	1	0	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
OrfB_Zn_ribbon	PF07282.11	gi|408406178|ref|YP_006864162.1|	-	0.17	11.8	4.1	0.42	10.6	4.1	1.6	1	0	0	1	1	1	0	Putative	transposase	DNA-binding	domain
Zn_Tnp_IS1595	PF12760.7	gi|408406178|ref|YP_006864162.1|	-	0.84	9.7	4.1	0.95	9.5	2.4	1.9	2	0	0	2	2	2	0	Transposase	zinc-ribbon	domain
CRCB	PF02537.15	gi|408406179|ref|YP_006864163.1|	-	3.7e-20	72.0	7.4	4.9e-20	71.6	7.4	1.1	1	0	0	1	1	1	1	CrcB-like	protein,	Camphor	Resistance	(CrcB)
DUF5373	PF17343.2	gi|408406179|ref|YP_006864163.1|	-	0.017	15.0	0.1	0.023	14.6	0.1	1.1	1	0	0	1	1	1	0	Family	of	unknown	function	(DUF5373)
DUF190	PF02641.15	gi|408406180|ref|YP_006864164.1|	-	4.7e-24	84.5	0.0	5.3e-24	84.4	0.0	1.0	1	0	0	1	1	1	1	Uncharacterized	ACR,	COG1993
DUF3240	PF11582.8	gi|408406180|ref|YP_006864164.1|	-	0.077	13.1	0.0	0.11	12.6	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3240)
PRA-CH	PF01502.18	gi|408406181|ref|YP_006864165.1|	-	4.4e-34	116.1	0.2	5.8e-34	115.8	0.2	1.2	1	0	0	1	1	1	1	Phosphoribosyl-AMP	cyclohydrolase
PALP	PF00291.25	gi|408406182|ref|YP_006864166.1|	-	2.3e-71	240.6	0.5	2.7e-71	240.4	0.5	1.0	1	0	0	1	1	1	1	Pyridoxal-phosphate	dependent	enzyme
NinF	PF05810.12	gi|408406182|ref|YP_006864166.1|	-	0.01	15.7	0.1	0.03	14.2	0.1	1.8	1	0	0	1	1	1	0	NinF	protein
HypA	PF01155.19	gi|408406182|ref|YP_006864166.1|	-	0.044	13.8	0.3	0.08	13.0	0.3	1.4	1	0	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
PK_C	PF02887.16	gi|408406182|ref|YP_006864166.1|	-	0.1	12.8	0.4	0.42	10.9	0.1	2.1	3	0	0	3	3	3	0	Pyruvate	kinase,	alpha/beta	domain
zf-C2H2_11	PF16622.5	gi|408406182|ref|YP_006864166.1|	-	0.12	12.2	0.1	1.6	8.6	0.1	2.2	2	0	0	2	2	2	0	zinc-finger	C2H2-type
C1_2	PF03107.16	gi|408406182|ref|YP_006864166.1|	-	0.13	12.6	0.9	0.23	11.8	0.9	1.3	1	0	0	1	1	1	0	C1	domain
zinc_ribbon_2	PF13240.6	gi|408406182|ref|YP_006864166.1|	-	1.7	8.4	3.9	3.1	7.7	3.9	1.4	1	0	0	1	1	1	0	zinc-ribbon	domain
ThiF	PF00899.21	gi|408406183|ref|YP_006864167.1|	-	5.9e-69	232.1	0.1	8e-69	231.7	0.1	1.1	1	0	0	1	1	1	1	ThiF	family
ThiS	PF02597.20	gi|408406183|ref|YP_006864167.1|	-	1.4e-09	38.5	0.0	3.8e-09	37.1	0.0	1.8	1	0	0	1	1	1	1	ThiS	family
Shikimate_DH	PF01488.20	gi|408406183|ref|YP_006864167.1|	-	3.3e-05	24.0	0.1	6.3e-05	23.1	0.1	1.4	1	0	0	1	1	1	1	Shikimate	/	quinate	5-dehydrogenase
Sacchrp_dh_NADP	PF03435.18	gi|408406183|ref|YP_006864167.1|	-	0.0039	17.5	1.2	0.017	15.4	0.7	2.2	1	1	0	2	2	2	1	Saccharopine	dehydrogenase	NADP	binding	domain
TBP	PF00352.21	gi|408406183|ref|YP_006864167.1|	-	0.012	15.5	0.0	0.051	13.5	0.0	2.0	2	0	0	2	2	2	0	Transcription	factor	TFIID	(or	TATA-binding	protein,	TBP)
2-Hacid_dh_C	PF02826.19	gi|408406183|ref|YP_006864167.1|	-	0.013	14.9	0.0	0.022	14.1	0.0	1.3	1	0	0	1	1	1	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
NAD_binding_7	PF13241.6	gi|408406183|ref|YP_006864167.1|	-	0.022	15.2	0.2	0.054	13.9	0.2	1.6	1	0	0	1	1	1	0	Putative	NAD(P)-binding
UDPG_MGDP_dh_N	PF03721.14	gi|408406183|ref|YP_006864167.1|	-	0.036	13.6	0.1	0.064	12.8	0.1	1.4	1	0	0	1	1	1	0	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
Ldh_1_N	PF00056.23	gi|408406183|ref|YP_006864167.1|	-	0.12	12.5	0.1	0.26	11.4	0.1	1.6	1	0	0	1	1	1	0	lactate/malate	dehydrogenase,	NAD	binding	domain
PolC_DP2	PF03833.13	gi|408406184|ref|YP_006864168.1|	-	0	1051.3	0.1	0	1049.5	0.0	1.7	2	0	0	2	2	2	1	DNA	polymerase	II	large	subunit	DP2
zinc-ribbons_6	PF07191.12	gi|408406184|ref|YP_006864168.1|	-	0.03	14.3	17.0	0.13	12.2	0.4	2.6	2	1	0	2	2	2	0	zinc-ribbons
DZR	PF12773.7	gi|408406184|ref|YP_006864168.1|	-	0.24	11.4	19.6	0.24	11.5	0.5	3.1	2	1	1	3	3	3	0	Double	zinc	ribbon
DUF1272	PF06906.11	gi|408406184|ref|YP_006864168.1|	-	1.2	9.2	9.7	13	6.0	3.7	2.7	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1272)
HypA	PF01155.19	gi|408406184|ref|YP_006864168.1|	-	3.6	7.7	19.5	0.33	11.0	0.8	4.2	3	2	0	3	3	3	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
Rubredoxin_2	PF18073.1	gi|408406184|ref|YP_006864168.1|	-	4.7	7.0	12.7	0.09	12.5	1.3	3.4	3	0	0	3	3	3	0	Rubredoxin	metal	binding	domain
PcrB	PF01884.17	gi|408406185|ref|YP_006864169.1|	-	1.4e-55	188.3	0.4	1.6e-55	188.0	0.4	1.0	1	0	0	1	1	1	1	PcrB	family
His_biosynth	PF00977.21	gi|408406185|ref|YP_006864169.1|	-	2.1e-10	40.5	0.3	5.9e-09	35.7	0.1	2.2	2	0	0	2	2	2	1	Histidine	biosynthesis	protein
IMPDH	PF00478.25	gi|408406185|ref|YP_006864169.1|	-	8.1e-06	25.1	0.4	0.00024	20.2	0.0	2.0	2	0	0	2	2	2	1	IMP	dehydrogenase	/	GMP	reductase	domain
NanE	PF04131.14	gi|408406185|ref|YP_006864169.1|	-	6.9e-05	22.1	0.6	0.005	16.1	0.1	2.3	2	0	0	2	2	2	1	Putative	N-acetylmannosamine-6-phosphate	epimerase
ThiG	PF05690.14	gi|408406185|ref|YP_006864169.1|	-	0.00034	20.0	1.0	0.11	11.8	0.2	2.1	2	0	0	2	2	2	2	Thiazole	biosynthesis	protein	ThiG
Dus	PF01207.17	gi|408406185|ref|YP_006864169.1|	-	0.00039	19.6	0.7	0.29	10.2	0.0	2.1	2	0	0	2	2	2	2	Dihydrouridine	synthase	(Dus)
Glyco_tran_WecB	PF03808.13	gi|408406185|ref|YP_006864169.1|	-	0.0016	18.5	0.1	0.099	12.6	0.0	2.2	2	0	0	2	2	2	1	Glycosyl	transferase	WecB/TagA/CpsF	family
Trp_syntA	PF00290.20	gi|408406185|ref|YP_006864169.1|	-	0.0024	16.7	0.6	0.0078	15.1	0.2	1.9	2	0	0	2	2	2	1	Tryptophan	synthase	alpha	chain
Ribul_P_3_epim	PF00834.19	gi|408406185|ref|YP_006864169.1|	-	0.0036	16.7	0.8	0.0073	15.7	0.3	1.7	2	0	0	2	2	2	1	Ribulose-phosphate	3	epimerase	family
TMP-TENI	PF02581.17	gi|408406185|ref|YP_006864169.1|	-	0.0091	15.3	0.9	0.027	13.8	0.1	2.0	2	1	0	2	2	2	1	Thiamine	monophosphate	synthase
DHO_dh	PF01180.21	gi|408406185|ref|YP_006864169.1|	-	0.015	14.5	1.4	0.017	14.4	0.4	1.6	2	0	0	2	2	2	0	Dihydroorotate	dehydrogenase
BtpA	PF03437.15	gi|408406185|ref|YP_006864169.1|	-	0.019	14.4	0.7	0.28	10.6	0.1	2.1	2	0	0	2	2	2	0	BtpA	family
FMN_dh	PF01070.18	gi|408406185|ref|YP_006864169.1|	-	0.024	13.7	0.0	0.11	11.5	0.0	1.8	2	0	0	2	2	2	0	FMN-dependent	dehydrogenase
DpaA_N	PF16924.5	gi|408406185|ref|YP_006864169.1|	-	0.024	14.7	0.3	0.78	9.8	0.0	2.7	3	0	0	3	3	3	0	Dipicolinate	synthase	subunit	A	N-terminal	domain
IGPS	PF00218.21	gi|408406185|ref|YP_006864169.1|	-	0.029	13.5	0.1	1.8	7.6	0.0	2.2	2	0	0	2	2	2	0	Indole-3-glycerol	phosphate	synthase
Aldolase	PF01081.19	gi|408406185|ref|YP_006864169.1|	-	0.048	13.1	0.6	0.29	10.5	0.1	2.2	2	0	0	2	2	2	0	KDPG	and	KHG	aldolase
G3P_antiterm	PF04309.12	gi|408406185|ref|YP_006864169.1|	-	0.11	11.9	0.6	0.75	9.2	0.2	2.2	2	0	0	2	2	2	0	Glycerol-3-phosphate	responsive	antiterminator
PS_pyruv_trans	PF04230.13	gi|408406185|ref|YP_006864169.1|	-	0.14	12.0	0.0	0.3	11.0	0.0	1.5	2	0	0	2	2	2	0	Polysaccharide	pyruvyl	transferase
CENP-M	PF11111.8	gi|408406185|ref|YP_006864169.1|	-	0.16	11.1	0.0	2.9	7.1	0.0	2.1	2	0	0	2	2	2	0	Centromere	protein	M	(CENP-M)
TrmB	PF01978.19	gi|408406187|ref|YP_006864171.1|	-	4.4e-05	23.3	0.0	9.8e-05	22.2	0.0	1.5	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_27	PF13463.6	gi|408406187|ref|YP_006864171.1|	-	9.8e-05	22.8	0.9	0.00024	21.5	0.1	2.0	2	0	0	2	2	2	1	Winged	helix	DNA-binding	domain
HTH_Crp_2	PF13545.6	gi|408406187|ref|YP_006864171.1|	-	0.0079	16.1	0.1	0.019	14.9	0.1	1.7	1	0	0	1	1	1	1	Crp-like	helix-turn-helix	domain
Replic_Relax	PF13814.6	gi|408406187|ref|YP_006864171.1|	-	0.0099	16.0	1.1	0.012	15.7	0.2	1.6	2	0	0	2	2	2	1	Replication-relaxation
HIRAN	PF08797.11	gi|408406187|ref|YP_006864171.1|	-	0.018	14.9	0.0	0.034	14.1	0.0	1.5	1	0	0	1	1	1	0	HIRAN	domain
HTH_IclR	PF09339.10	gi|408406187|ref|YP_006864171.1|	-	0.043	13.6	0.3	0.093	12.5	0.3	1.6	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
CCDC53	PF10152.9	gi|408406187|ref|YP_006864171.1|	-	0.047	14.1	0.3	0.062	13.7	0.3	1.2	1	0	0	1	1	1	0	Subunit	CCDC53	of	WASH	complex
PadR	PF03551.14	gi|408406187|ref|YP_006864171.1|	-	0.059	13.3	0.0	0.23	11.5	0.0	2.0	1	1	0	1	1	1	0	Transcriptional	regulator	PadR-like	family
DUF4131	PF13567.6	gi|408406187|ref|YP_006864171.1|	-	0.087	12.5	0.8	0.35	10.5	0.1	1.9	1	1	0	2	2	2	0	Domain	of	unknown	function	(DUF4131)
HTH_5	PF01022.20	gi|408406187|ref|YP_006864171.1|	-	0.15	12.0	0.1	0.44	10.4	0.1	1.8	1	1	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
Penicillinase_R	PF03965.16	gi|408406188|ref|YP_006864172.1|	-	0.017	15.5	0.0	0.027	14.8	0.0	1.3	1	0	0	1	1	1	0	Penicillinase	repressor
DUF5567	PF17722.1	gi|408406188|ref|YP_006864172.1|	-	0.076	12.9	0.0	0.11	12.4	0.0	1.2	1	0	0	1	1	1	0	Family	of	unknown	function	(DUF5567)
DUF4367	PF14285.6	gi|408406188|ref|YP_006864172.1|	-	0.094	13.2	1.8	1.8	9.0	0.2	2.3	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4367)
AbiEi_4	PF13338.6	gi|408406188|ref|YP_006864172.1|	-	0.095	12.9	0.0	0.16	12.1	0.0	1.4	1	0	0	1	1	1	0	Transcriptional	regulator,	AbiEi	antitoxin
HTH_ABP1_N	PF18107.1	gi|408406188|ref|YP_006864172.1|	-	0.19	11.4	1.3	0.2	11.4	0.1	1.6	2	0	0	2	2	2	0	Fission	yeast	centromere	protein	N-terminal	domain
#
# Program:         hmmscan
# Version:         3.2.1 (June 2018)
# Pipeline mode:   SCAN
# Query file:      /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Thaumarchaeota/Candidatus_Nitrososphaera_gargensis_Ga9_2_uid176707/NC_018719.faa
# Target file:     /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm
# Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Thaumarchaeota/Candidatus_Nitrososphaera_gargensis_Ga9_2_uid176707/NC_018719.PFam32-A --tblout /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Thaumarchaeota/Candidatus_Nitrososphaera_gargensis_Ga9_2_uid176707/NC_018719.PFam32-A.tblout --cpu 20 /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Thaumarchaeota/Candidatus_Nitrososphaera_gargensis_Ga9_2_uid176707/NC_018719.faa 
# Current dir:     /oak/stanford/groups/akundaje/marinovg/genomes
# Date:            Mon Mar 25 16:32:53 2019
# [ok]