# --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- Cdc6_C PF09079.6 gi|557693446|ref|YP_008796500.1| - 1.4e-12 47.1 0.0 2.9e-12 46.1 0.0 1.5 1 0 0 1 1 1 1 CDC6, C terminal AAA_16 PF13191.1 gi|557693446|ref|YP_008796500.1| - 5e-08 33.1 0.3 1.8e-07 31.3 0.2 2.0 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|557693446|ref|YP_008796500.1| - 8.2e-08 32.4 0.1 2.9e-07 30.6 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA PF00004.24 gi|557693446|ref|YP_008796500.1| - 3.1e-05 24.1 0.0 8e-05 22.8 0.0 1.7 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) TIP49 PF06068.8 gi|557693446|ref|YP_008796500.1| - 8.4e-05 21.4 0.1 0.04 12.6 0.0 2.2 2 0 0 2 2 2 2 TIP49 C-terminus NACHT PF05729.7 gi|557693446|ref|YP_008796500.1| - 0.005 16.5 0.1 0.012 15.2 0.0 1.8 2 1 0 2 2 1 1 NACHT domain AAA_17 PF13207.1 gi|557693446|ref|YP_008796500.1| - 0.017 15.8 1.7 0.089 13.6 1.2 2.3 1 1 0 1 1 1 0 AAA domain Sigma54_activat PF00158.21 gi|557693446|ref|YP_008796500.1| - 0.024 14.0 0.0 0.056 12.9 0.0 1.5 1 0 0 1 1 1 0 Sigma-54 interaction domain AFG1_ATPase PF03969.11 gi|557693446|ref|YP_008796500.1| - 0.037 12.8 0.0 0.058 12.1 0.0 1.2 1 0 0 1 1 1 0 AFG1-like ATPase DUF4194 PF13835.1 gi|557693446|ref|YP_008796500.1| - 0.04 13.3 0.1 0.34 10.3 0.0 2.3 2 1 0 2 2 2 0 Domain of unknown function (DUF4194) AAA_32 PF13654.1 gi|557693446|ref|YP_008796500.1| - 0.06 12.0 0.4 2.8 6.4 0.1 2.2 2 0 0 2 2 2 0 AAA domain AAA_18 PF13238.1 gi|557693446|ref|YP_008796500.1| - 0.071 13.4 0.1 0.17 12.2 0.0 1.8 2 0 0 2 2 1 0 AAA domain Sigma54_activ_2 PF14532.1 gi|557693446|ref|YP_008796500.1| - 0.071 13.1 0.0 0.15 12.0 0.0 1.7 1 0 0 1 1 1 0 Sigma-54 interaction domain DUF815 PF05673.8 gi|557693446|ref|YP_008796500.1| - 0.074 11.9 0.0 0.14 11.0 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF815) RuvB_N PF05496.7 gi|557693446|ref|YP_008796500.1| - 0.077 12.0 0.0 0.59 9.1 0.0 2.1 2 0 0 2 2 2 0 Holliday junction DNA helicase ruvB N-terminus AAA_19 PF13245.1 gi|557693446|ref|YP_008796500.1| - 0.098 12.4 0.0 0.28 10.9 0.0 1.7 1 0 0 1 1 1 0 Part of AAA domain RFX_DNA_binding PF02257.10 gi|557693446|ref|YP_008796500.1| - 0.11 12.5 0.0 0.35 11.0 0.0 1.7 2 0 0 2 2 1 0 RFX DNA-binding domain Zeta_toxin PF06414.7 gi|557693446|ref|YP_008796500.1| - 0.12 11.4 0.0 0.22 10.5 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin UPF0079 PF02367.12 gi|557693446|ref|YP_008796500.1| - 0.13 11.8 0.1 0.26 10.9 0.0 1.4 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 AAA PF00004.24 gi|557693447|ref|YP_008796501.1| - 1.1e-13 51.5 0.0 5.4e-13 49.2 0.0 2.2 2 0 0 2 2 1 1 ATPase family associated with various cellular activities (AAA) Rad17 PF03215.10 gi|557693447|ref|YP_008796501.1| - 1.7e-12 46.8 0.0 1.4e-06 27.2 0.0 2.2 2 0 0 2 2 2 2 Rad17 cell cycle checkpoint protein AAA_22 PF13401.1 gi|557693447|ref|YP_008796501.1| - 7.5e-08 32.5 1.1 1.1e-05 25.5 0.1 3.1 2 2 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|557693447|ref|YP_008796501.1| - 5.8e-07 29.6 1.2 4.2e-06 26.8 0.0 2.6 1 1 1 2 2 2 1 AAA ATPase domain RuvB_N PF05496.7 gi|557693447|ref|YP_008796501.1| - 6.6e-06 25.3 0.0 1.9e-05 23.8 0.0 1.8 2 0 0 2 2 2 1 Holliday junction DNA helicase ruvB N-terminus AAA_2 PF07724.9 gi|557693447|ref|YP_008796501.1| - 2.3e-05 24.3 0.0 5.7e-05 23.0 0.0 1.6 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) AAA_14 PF13173.1 gi|557693447|ref|YP_008796501.1| - 0.00019 21.3 0.0 0.00043 20.1 0.0 1.6 1 0 0 1 1 1 1 AAA domain DUF815 PF05673.8 gi|557693447|ref|YP_008796501.1| - 0.00029 19.8 0.0 0.00049 19.1 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF815) Bac_DnaA PF00308.13 gi|557693447|ref|YP_008796501.1| - 0.0012 18.5 0.2 0.018 14.6 0.1 2.4 1 1 0 1 1 1 1 Bacterial dnaA protein AAA_17 PF13207.1 gi|557693447|ref|YP_008796501.1| - 0.0016 19.2 0.1 0.0058 17.4 0.1 2.2 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|557693447|ref|YP_008796501.1| - 0.0019 18.0 0.1 0.019 14.8 0.0 2.3 2 1 0 2 2 2 1 AAA domain AAA_5 PF07728.9 gi|557693447|ref|YP_008796501.1| - 0.0029 17.3 0.0 0.0085 15.8 0.0 1.9 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) Arch_ATPase PF01637.13 gi|557693447|ref|YP_008796501.1| - 0.0034 17.1 0.3 0.011 15.4 0.0 2.1 2 1 0 2 2 2 1 Archaeal ATPase DUF258 PF03193.11 gi|557693447|ref|YP_008796501.1| - 0.006 15.7 0.0 0.011 14.9 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AFG1_ATPase PF03969.11 gi|557693447|ref|YP_008796501.1| - 0.0076 15.0 0.0 0.013 14.3 0.0 1.3 1 0 0 1 1 1 1 AFG1-like ATPase AAA_24 PF13479.1 gi|557693447|ref|YP_008796501.1| - 0.021 14.3 0.0 0.043 13.3 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_29 PF13555.1 gi|557693447|ref|YP_008796501.1| - 0.035 13.6 0.6 0.084 12.4 0.0 1.9 2 0 0 2 2 2 0 P-loop containing region of AAA domain Miro PF08477.8 gi|557693447|ref|YP_008796501.1| - 0.038 14.4 0.1 0.17 12.4 0.1 2.2 1 1 0 1 1 1 0 Miro-like protein TIP49 PF06068.8 gi|557693447|ref|YP_008796501.1| - 0.043 12.5 0.1 0.34 9.5 0.0 2.1 2 1 0 2 2 2 0 TIP49 C-terminus MMR_HSR1 PF01926.18 gi|557693447|ref|YP_008796501.1| - 0.046 13.6 0.0 0.15 12.0 0.0 1.9 2 0 0 2 2 2 0 50S ribosome-binding GTPase NACHT PF05729.7 gi|557693447|ref|YP_008796501.1| - 0.047 13.3 0.0 1.1 8.8 0.0 2.5 2 0 0 2 2 2 0 NACHT domain DNA_pol3_delta PF06144.8 gi|557693447|ref|YP_008796501.1| - 0.047 13.1 0.0 0.16 11.4 0.0 1.9 2 0 0 2 2 1 0 DNA polymerase III, delta subunit IstB_IS21 PF01695.12 gi|557693447|ref|YP_008796501.1| - 0.065 12.6 0.0 0.14 11.5 0.0 1.5 1 0 0 1 1 1 0 IstB-like ATP binding protein RFC1 PF08519.7 gi|557693447|ref|YP_008796501.1| - 0.066 12.9 0.1 0.12 12.1 0.0 1.4 1 0 0 1 1 1 0 Replication factor RFC1 C terminal domain AAA_28 PF13521.1 gi|557693447|ref|YP_008796501.1| - 0.069 13.1 0.3 0.6 10.0 0.0 2.4 2 1 0 2 2 2 0 AAA domain AAA_30 PF13604.1 gi|557693447|ref|YP_008796501.1| - 0.13 11.8 1.1 0.89 9.1 0.8 2.3 1 1 0 1 1 1 0 AAA domain Rep_fac_C PF08542.6 gi|557693448|ref|YP_008796502.1| - 9.3e-20 70.4 0.1 3.6e-19 68.5 0.0 2.0 2 0 0 2 2 2 1 Replication factor C C-terminal domain DNA_pol3_delta2 PF13177.1 gi|557693448|ref|YP_008796502.1| - 3.4e-15 56.0 0.0 1.3e-13 50.9 0.0 2.3 1 1 0 1 1 1 1 DNA polymerase III, delta subunit AAA PF00004.24 gi|557693448|ref|YP_008796502.1| - 6.4e-15 55.5 0.0 1.4e-14 54.4 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Rad17 PF03215.10 gi|557693448|ref|YP_008796502.1| - 1.1e-09 37.5 0.0 0.00012 20.8 0.0 2.1 2 0 0 2 2 2 2 Rad17 cell cycle checkpoint protein RuvB_N PF05496.7 gi|557693448|ref|YP_008796502.1| - 2.2e-08 33.4 0.0 6e-07 28.7 0.0 2.3 2 0 0 2 2 2 1 Holliday junction DNA helicase ruvB N-terminus TIP49 PF06068.8 gi|557693448|ref|YP_008796502.1| - 1.4e-06 27.2 0.0 0.0041 15.8 0.0 2.1 2 0 0 2 2 2 2 TIP49 C-terminus AAA_22 PF13401.1 gi|557693448|ref|YP_008796502.1| - 5.9e-06 26.4 0.0 0.071 13.2 0.0 2.8 2 1 1 3 3 3 2 AAA domain AAA_16 PF13191.1 gi|557693448|ref|YP_008796502.1| - 8.3e-06 25.9 0.0 2.3e-05 24.4 0.0 2.1 1 1 0 1 1 1 1 AAA ATPase domain DNA_pol3_delta PF06144.8 gi|557693448|ref|YP_008796502.1| - 1e-05 25.1 0.0 1.6e-05 24.5 0.0 1.2 1 0 0 1 1 1 1 DNA polymerase III, delta subunit AAA_14 PF13173.1 gi|557693448|ref|YP_008796502.1| - 9.4e-05 22.3 0.0 0.00025 20.9 0.0 1.7 1 1 1 2 2 2 1 AAA domain Mg_chelatase PF01078.16 gi|557693448|ref|YP_008796502.1| - 0.0002 20.6 0.0 0.0025 17.0 0.0 2.3 2 1 1 3 3 3 1 Magnesium chelatase, subunit ChlI ResIII PF04851.10 gi|557693448|ref|YP_008796502.1| - 0.00023 21.0 0.0 0.00043 20.1 0.0 1.5 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit AAA_19 PF13245.1 gi|557693448|ref|YP_008796502.1| - 0.00045 19.9 0.0 0.00097 18.8 0.0 1.7 1 1 0 1 1 1 1 Part of AAA domain Zeta_toxin PF06414.7 gi|557693448|ref|YP_008796502.1| - 0.0052 15.9 0.0 0.017 14.2 0.0 1.8 1 1 1 2 2 2 1 Zeta toxin AAA_11 PF13086.1 gi|557693448|ref|YP_008796502.1| - 0.006 16.1 0.0 0.0083 15.7 0.0 1.4 1 1 0 1 1 1 1 AAA domain IstB_IS21 PF01695.12 gi|557693448|ref|YP_008796502.1| - 0.011 15.1 0.1 0.031 13.6 0.0 1.9 1 1 0 1 1 1 0 IstB-like ATP binding protein FtsK_SpoIIIE PF01580.13 gi|557693448|ref|YP_008796502.1| - 0.014 14.8 0.0 0.026 14.0 0.0 1.4 1 0 0 1 1 1 0 FtsK/SpoIIIE family PhoH PF02562.11 gi|557693448|ref|YP_008796502.1| - 0.021 14.0 0.0 0.047 12.9 0.0 1.6 1 0 0 1 1 1 0 PhoH-like protein AAA_33 PF13671.1 gi|557693448|ref|YP_008796502.1| - 0.021 14.6 0.0 0.039 13.8 0.0 1.5 1 1 0 1 1 1 0 AAA domain DUF815 PF05673.8 gi|557693448|ref|YP_008796502.1| - 0.026 13.4 0.0 0.091 11.6 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF815) Sigma54_activat PF00158.21 gi|557693448|ref|YP_008796502.1| - 0.03 13.7 0.1 0.099 12.1 0.0 1.8 2 0 0 2 2 2 0 Sigma-54 interaction domain DNA_pol3_gamma3 PF12169.3 gi|557693448|ref|YP_008796502.1| - 0.034 13.9 0.0 0.074 12.8 0.0 1.6 1 0 0 1 1 1 0 DNA polymerase III subunits gamma and tau domain III AAA_30 PF13604.1 gi|557693448|ref|YP_008796502.1| - 0.038 13.5 0.0 0.1 12.1 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_3 PF07726.6 gi|557693448|ref|YP_008796502.1| - 0.043 13.4 0.0 0.094 12.3 0.0 1.6 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_18 PF13238.1 gi|557693448|ref|YP_008796502.1| - 0.049 13.9 0.0 0.26 11.6 0.0 2.0 2 0 0 2 2 2 0 AAA domain HupH_C PF04809.8 gi|557693448|ref|YP_008796502.1| - 0.067 12.9 0.0 0.13 11.9 0.0 1.5 1 0 0 1 1 1 0 HupH hydrogenase expression protein, C-terminal conserved region T2SE PF00437.15 gi|557693448|ref|YP_008796502.1| - 0.074 11.9 0.0 0.15 10.8 0.0 1.5 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_17 PF13207.1 gi|557693448|ref|YP_008796502.1| - 0.099 13.4 0.0 0.23 12.2 0.0 1.9 1 1 0 1 1 1 0 AAA domain AAA_25 PF13481.1 gi|557693448|ref|YP_008796502.1| - 0.099 12.0 0.1 0.34 10.2 0.0 1.9 1 1 0 2 2 2 0 AAA domain AAA_5 PF07728.9 gi|557693448|ref|YP_008796502.1| - 0.13 12.0 0.0 0.37 10.5 0.0 1.8 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) RNA_helicase PF00910.17 gi|557693448|ref|YP_008796502.1| - 0.15 12.2 0.0 0.31 11.2 0.0 1.5 1 0 0 1 1 1 0 RNA helicase TatD_DNase PF01026.16 gi|557693449|ref|YP_008796503.1| - 1.2e-57 195.0 0.0 1.4e-57 194.8 0.0 1.0 1 0 0 1 1 1 1 TatD related DNase Lactamase_B_3 PF13483.1 gi|557693451|ref|YP_008796505.1| - 8.1e-35 119.9 0.1 9.9e-35 119.6 0.1 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.2 gi|557693451|ref|YP_008796505.1| - 9.4e-23 80.7 0.0 1.2e-22 80.4 0.0 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|557693451|ref|YP_008796505.1| - 0.0075 15.9 6.9 0.094 12.3 4.8 2.1 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily SnoaL_3 PF13474.1 gi|557693453|ref|YP_008796507.1| - 8.8e-11 41.9 0.0 1.1e-10 41.6 0.0 1.1 1 0 0 1 1 1 1 SnoaL-like domain DUF4440 PF14534.1 gi|557693453|ref|YP_008796507.1| - 0.00026 21.1 0.0 0.00035 20.7 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4440) CaMKII_AD PF08332.5 gi|557693453|ref|YP_008796507.1| - 0.016 15.0 0.0 0.11 12.3 0.0 2.0 2 0 0 2 2 2 0 Calcium/calmodulin dependent protein kinase II Association DUF3636 PF12331.3 gi|557693455|ref|YP_008796509.1| - 0.013 15.0 0.0 0.018 14.5 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3636) CENP-O PF09496.5 gi|557693455|ref|YP_008796509.1| - 0.14 12.4 0.0 0.26 11.5 0.0 1.5 1 0 0 1 1 1 0 Cenp-O kinetochore centromere component DUF372 PF04036.7 gi|557693456|ref|YP_008796510.1| - 1e-12 47.3 0.2 1.5e-12 46.7 0.1 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF372) DUF381 PF04038.7 gi|557693456|ref|YP_008796510.1| - 1.5e-08 34.5 0.0 2e-08 34.1 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF381) DnaJ PF00226.26 gi|557693457|ref|YP_008796511.1| - 6.8e-30 102.6 2.6 1.1e-29 101.9 1.8 1.4 1 0 0 1 1 1 1 DnaJ domain CTDII PF01556.13 gi|557693457|ref|YP_008796511.1| - 4.2e-15 55.4 0.2 1.4e-06 28.1 0.0 3.2 3 0 0 3 3 3 2 DnaJ C terminal domain DnaJ_CXXCXGXG PF00684.14 gi|557693457|ref|YP_008796511.1| - 2.2e-11 43.6 15.3 3.8e-11 42.8 10.6 1.4 1 0 0 1 1 1 1 DnaJ central domain DUF3782 PF12644.2 gi|557693457|ref|YP_008796511.1| - 0.33 10.7 4.2 3.1 7.6 1.1 2.6 2 1 0 2 2 2 0 Protein of unknown function (DUF3782) DUF2703 PF10865.3 gi|557693457|ref|YP_008796511.1| - 1 9.3 4.7 16 5.4 0.1 3.3 2 1 1 3 3 3 0 Domain of unknown function (DUF2703) Antiterm PF03589.8 gi|557693457|ref|YP_008796511.1| - 1.3 9.1 12.9 1.5 8.9 1.0 3.6 1 1 2 3 3 3 0 Antitermination protein zf-FPG_IleRS PF06827.9 gi|557693457|ref|YP_008796511.1| - 1.4 8.6 9.1 20 4.9 0.4 3.4 3 0 0 3 3 3 0 Zinc finger found in FPG and IleRS HSP70 PF00012.15 gi|557693458|ref|YP_008796512.1| - 7e-224 744.2 6.0 4.7e-206 685.3 3.2 2.0 1 1 1 2 2 2 2 Hsp70 protein MreB_Mbl PF06723.8 gi|557693458|ref|YP_008796512.1| - 1.4e-18 66.5 3.1 1.7e-17 63.0 2.2 2.3 1 1 0 1 1 1 1 MreB/Mbl protein FGGY_C PF02782.11 gi|557693458|ref|YP_008796512.1| - 4.9e-05 23.0 0.0 0.00011 21.8 0.0 1.5 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, C-terminal domain StbA PF06406.6 gi|557693458|ref|YP_008796512.1| - 0.00027 19.9 0.1 0.003 16.5 0.1 2.4 2 1 1 3 3 3 1 StbA protein DUF45 PF01863.12 gi|557693458|ref|YP_008796512.1| - 0.022 14.5 0.9 0.051 13.3 0.7 1.5 1 0 0 1 1 1 0 Protein of unknown function DUF45 NCA2 PF08637.5 gi|557693458|ref|YP_008796512.1| - 0.049 12.5 0.3 0.085 11.7 0.2 1.3 1 0 0 1 1 1 0 ATP synthase regulation protein NCA2 Hydantoinase_A PF01968.13 gi|557693458|ref|YP_008796512.1| - 0.13 11.3 1.7 0.28 10.2 0.0 2.4 3 0 0 3 3 3 0 Hydantoinase/oxoprolinase FtsA PF14450.1 gi|557693458|ref|YP_008796512.1| - 1.2 8.9 11.5 3 7.7 0.3 4.8 4 2 0 4 4 4 0 Cell division protein FtsA DUF1090 PF06476.7 gi|557693458|ref|YP_008796512.1| - 2.4 7.8 10.1 5.2 6.7 7.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1090) GrpE PF01025.14 gi|557693459|ref|YP_008796513.1| - 4.7e-40 136.8 1.7 5.6e-40 136.5 1.2 1.0 1 0 0 1 1 1 1 GrpE AAA_32 PF13654.1 gi|557693459|ref|YP_008796513.1| - 0.036 12.7 0.9 0.041 12.5 0.6 1.2 1 0 0 1 1 1 0 AAA domain GTPase_Cys_C PF12631.2 gi|557693459|ref|YP_008796513.1| - 0.06 13.7 2.0 0.22 11.9 0.1 2.4 2 1 1 3 3 3 0 Catalytic cysteine-containing C-terminus of GTPase, MnmE Baculo_PEP_C PF04513.7 gi|557693459|ref|YP_008796513.1| - 0.064 13.0 0.4 0.089 12.6 0.3 1.3 1 1 0 1 1 1 0 Baculovirus polyhedron envelope protein, PEP, C terminus Exonuc_V_gamma PF04257.9 gi|557693459|ref|YP_008796513.1| - 0.099 10.6 0.1 0.12 10.3 0.1 1.1 1 0 0 1 1 1 0 Exodeoxyribonuclease V, gamma subunit KxDL PF10241.4 gi|557693459|ref|YP_008796513.1| - 0.1 12.4 0.8 0.21 11.5 0.6 1.4 1 0 0 1 1 1 0 Uncharacterized conserved protein COG2 PF06148.6 gi|557693459|ref|YP_008796513.1| - 0.11 12.4 3.2 0.23 11.3 2.2 1.5 1 0 0 1 1 1 0 COG (conserved oligomeric Golgi) complex component, COG2 DUF3348 PF11828.3 gi|557693459|ref|YP_008796513.1| - 0.31 10.4 5.2 0.42 10.0 3.6 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3348) MutS_III PF05192.13 gi|557693459|ref|YP_008796513.1| - 0.38 10.5 1.7 0.6 9.8 1.2 1.5 1 1 0 1 1 1 0 MutS domain III CR6_interact PF10147.4 gi|557693459|ref|YP_008796513.1| - 0.45 9.8 4.3 0.6 9.4 3.0 1.2 1 0 0 1 1 1 0 Growth arrest and DNA-damage-inducible proteins-interacting protein 1 CARDB PF07705.6 gi|557693460|ref|YP_008796514.1| - 0.084 12.9 0.1 0.36 10.9 0.0 2.2 1 0 0 1 1 1 0 CARDB DUF354 PF04007.7 gi|557693461|ref|YP_008796515.1| - 6e-44 150.2 0.0 7.1e-44 150.0 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF354) LisH PF08513.6 gi|557693461|ref|YP_008796515.1| - 0.14 11.9 0.1 15 5.5 0.0 2.7 3 0 0 3 3 3 0 LisH Glycos_transf_4 PF00953.16 gi|557693462|ref|YP_008796516.1| - 7.6e-25 87.5 8.2 7.6e-25 87.5 5.7 1.9 1 1 0 1 1 1 1 Glycosyl transferase family 4 GFO_IDH_MocA PF01408.17 gi|557693465|ref|YP_008796519.1| - 1.6e-32 112.5 0.1 2.6e-32 111.8 0.1 1.3 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.12 gi|557693465|ref|YP_008796519.1| - 4.5e-08 32.8 0.0 1.5e-07 31.1 0.0 1.9 1 1 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain Semialdhyde_dh PF01118.19 gi|557693465|ref|YP_008796519.1| - 6.7e-07 29.6 0.0 1.4e-06 28.6 0.0 1.6 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain ADH_zinc_N PF00107.21 gi|557693465|ref|YP_008796519.1| - 0.00029 20.3 0.0 0.00059 19.3 0.0 1.5 1 0 0 1 1 1 1 Zinc-binding dehydrogenase NAD_binding_3 PF03447.11 gi|557693465|ref|YP_008796519.1| - 0.00046 20.5 0.1 0.0024 18.2 0.0 2.0 2 0 0 2 2 2 1 Homoserine dehydrogenase, NAD binding domain F420_oxidored PF03807.12 gi|557693465|ref|YP_008796519.1| - 0.031 14.6 0.0 0.1 13.0 0.0 1.9 1 1 1 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent Shikimate_DH PF01488.15 gi|557693465|ref|YP_008796519.1| - 0.038 14.0 0.0 0.064 13.3 0.0 1.4 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase CoA_binding PF02629.14 gi|557693465|ref|YP_008796519.1| - 0.061 13.8 0.0 0.13 12.7 0.0 1.6 1 0 0 1 1 1 0 CoA binding domain Lipase_GDSL_2 PF13472.1 gi|557693465|ref|YP_008796519.1| - 0.078 13.0 0.0 0.35 10.9 0.0 2.0 2 1 0 2 2 2 0 GDSL-like Lipase/Acylhydrolase family Herpes_UL42 PF02282.11 gi|557693465|ref|YP_008796519.1| - 0.096 12.2 0.0 0.17 11.4 0.0 1.3 1 0 0 1 1 1 0 DNA polymerase processivity factor (UL42) KaiC PF06745.8 gi|557693466|ref|YP_008796520.1| - 6.4e-16 58.1 0.0 7.9e-16 57.8 0.0 1.0 1 0 0 1 1 1 1 KaiC DUF835 PF05763.7 gi|557693466|ref|YP_008796520.1| - 0.0064 16.0 0.0 0.039 13.5 0.0 2.0 1 1 0 1 1 1 1 Protein of unknown function (DUF835) GvpD PF07088.6 gi|557693466|ref|YP_008796520.1| - 0.051 11.9 0.2 0.047 12.0 0.1 1.2 1 1 0 1 1 1 0 GvpD gas vesicle protein PolC_DP2 PF03833.8 gi|557693467|ref|YP_008796521.1| - 6.8e-06 24.0 0.1 8.1e-06 23.8 0.1 1.0 1 0 0 1 1 1 1 DNA polymerase II large subunit DP2 Sec34 PF04136.10 gi|557693468|ref|YP_008796522.1| - 0.003 17.2 0.6 2.3 7.9 0.0 2.2 2 0 0 2 2 2 2 Sec34-like family DUF2312 PF10073.4 gi|557693468|ref|YP_008796522.1| - 0.041 13.2 0.6 0.16 11.3 0.1 2.2 1 1 1 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2312) Methyltransf_26 PF13659.1 gi|557693470|ref|YP_008796524.1| - 6.3e-17 61.6 0.0 3.8e-16 59.1 0.0 2.3 2 0 0 2 2 2 1 Methyltransferase domain N6_Mtase PF02384.11 gi|557693470|ref|YP_008796524.1| - 2.1e-11 43.5 0.0 7.9e-06 25.1 0.0 3.4 3 0 0 3 3 3 2 N-6 DNA Methylase Eco57I PF07669.6 gi|557693470|ref|YP_008796524.1| - 6.7e-09 36.0 0.1 1.7e-08 34.7 0.1 1.6 1 0 0 1 1 1 1 Eco57I restriction-modification methylase UPF0020 PF01170.13 gi|557693470|ref|YP_008796524.1| - 0.011 15.2 0.0 0.21 11.1 0.0 2.7 3 0 0 3 3 3 0 Putative RNA methylase family UPF0020 PLDc_2 PF13091.1 gi|557693471|ref|YP_008796525.1| - 3.3e-14 52.7 0.0 8e-14 51.4 0.0 1.7 1 0 0 1 1 1 1 PLD-like domain SNF2_N PF00176.18 gi|557693471|ref|YP_008796525.1| - 5e-13 48.5 3.4 4.4e-08 32.2 0.0 4.0 3 1 1 4 4 4 2 SNF2 family N-terminal domain Helicase_C PF00271.26 gi|557693471|ref|YP_008796525.1| - 9.6e-12 44.6 0.0 2.7e-11 43.1 0.0 1.8 1 0 0 1 1 1 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|557693471|ref|YP_008796525.1| - 7.2e-09 35.7 0.0 0.0051 16.6 0.0 2.7 1 1 1 2 2 2 2 Type III restriction enzyme, res subunit Flavi_DEAD PF07652.9 gi|557693471|ref|YP_008796525.1| - 4.8e-06 26.4 0.0 0.00025 20.8 0.0 2.8 1 1 0 1 1 1 1 Flavivirus DEAD domain AAA_22 PF13401.1 gi|557693471|ref|YP_008796525.1| - 2.6e-05 24.3 0.1 0.00016 21.7 0.0 2.5 1 1 0 1 1 1 1 AAA domain IstB_IS21 PF01695.12 gi|557693471|ref|YP_008796525.1| - 6.5e-05 22.4 0.1 0.0012 18.2 0.1 2.5 1 1 0 1 1 1 1 IstB-like ATP binding protein DEAD PF00270.24 gi|557693471|ref|YP_008796525.1| - 0.0016 17.9 0.1 0.33 10.4 0.0 2.7 1 1 0 1 1 1 1 DEAD/DEAH box helicase BID PF06393.6 gi|557693471|ref|YP_008796525.1| - 0.013 14.8 0.0 0.031 13.6 0.0 1.6 1 0 0 1 1 1 0 BH3 interacting domain (BID) Mad3_BUB1_I PF08311.7 gi|557693471|ref|YP_008796525.1| - 0.085 12.6 3.2 4.5 7.0 0.0 3.3 3 0 0 3 3 3 0 Mad3/BUB1 homology region 1 Excalibur PF05901.6 gi|557693473|ref|YP_008796527.1| - 0.00059 20.1 2.0 0.0011 19.2 1.4 1.5 1 1 0 1 1 1 1 Excalibur calcium-binding domain TrmB PF01978.14 gi|557693474|ref|YP_008796528.1| - 2.2e-05 24.0 0.1 2.7e-05 23.7 0.1 1.1 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB DUF977 PF06163.6 gi|557693474|ref|YP_008796528.1| - 6e-05 22.7 0.1 7.7e-05 22.4 0.1 1.1 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF977) MarR_2 PF12802.2 gi|557693474|ref|YP_008796528.1| - 0.00017 21.1 0.0 0.00027 20.5 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.1 gi|557693474|ref|YP_008796528.1| - 0.0054 17.0 0.0 0.0094 16.2 0.0 1.4 1 1 0 1 1 1 1 Winged helix DNA-binding domain DUF387 PF04079.11 gi|557693474|ref|YP_008796528.1| - 0.026 13.8 0.3 0.03 13.7 0.2 1.1 1 0 0 1 1 1 0 Putative transcriptional regulators (Ypuh-like) HTH_24 PF13412.1 gi|557693474|ref|YP_008796528.1| - 0.035 13.4 0.1 0.049 13.0 0.1 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_45 PF14947.1 gi|557693474|ref|YP_008796528.1| - 0.035 13.9 0.1 0.048 13.4 0.1 1.2 1 0 0 1 1 1 0 Winged helix-turn-helix HTH_IclR PF09339.5 gi|557693474|ref|YP_008796528.1| - 0.084 12.4 0.0 0.13 11.8 0.0 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain Rifin_STEVOR PF02009.11 gi|557693474|ref|YP_008796528.1| - 0.09 12.4 1.9 0.12 12.0 1.3 1.2 1 0 0 1 1 1 0 Rifin/stevor family RPA_C PF08784.6 gi|557693474|ref|YP_008796528.1| - 0.16 12.4 0.0 0.27 11.6 0.0 1.4 1 0 0 1 1 1 0 Replication protein A C terminal DUF3666 PF12408.3 gi|557693475|ref|YP_008796529.1| - 0.07 12.2 0.0 0.2 10.7 0.0 1.7 2 0 0 2 2 2 0 Ribose-5-phosphate isomerase CABIT PF12736.2 gi|557693475|ref|YP_008796529.1| - 0.086 11.8 0.0 0.12 11.3 0.0 1.3 1 0 0 1 1 1 0 Cell-cycle sustaining, positive selection, CbiA PF01656.18 gi|557693476|ref|YP_008796530.1| - 8.4e-38 129.7 0.0 1.1e-37 129.3 0.0 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|557693476|ref|YP_008796530.1| - 2.1e-10 40.7 0.0 2.4e-06 27.5 0.0 2.3 2 0 0 2 2 2 2 AAA domain MipZ PF09140.6 gi|557693476|ref|YP_008796530.1| - 2.2e-10 40.0 0.0 2.9e-05 23.2 0.0 2.2 1 1 1 2 2 2 2 ATPase MipZ ArsA_ATPase PF02374.10 gi|557693476|ref|YP_008796530.1| - 2.5e-08 33.3 0.0 8.7e-08 31.5 0.0 1.9 1 1 0 1 1 1 1 Anion-transporting ATPase YhjQ PF06564.7 gi|557693476|ref|YP_008796530.1| - 8.6e-07 28.5 0.0 0.03 13.6 0.0 2.1 2 0 0 2 2 2 2 YhjQ protein AAA_25 PF13481.1 gi|557693476|ref|YP_008796530.1| - 4.3e-06 26.2 0.0 7.7e-06 25.4 0.0 1.4 1 1 0 1 1 1 1 AAA domain Fer4_NifH PF00142.13 gi|557693476|ref|YP_008796530.1| - 2.5e-05 23.6 0.0 6.5e-05 22.2 0.0 1.6 2 0 0 2 2 2 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family VirC1 PF07015.6 gi|557693476|ref|YP_008796530.1| - 5e-05 22.4 0.0 0.0016 17.5 0.0 2.1 2 0 0 2 2 2 1 VirC1 protein AAA_17 PF13207.1 gi|557693476|ref|YP_008796530.1| - 0.00031 21.5 0.1 0.00087 20.0 0.1 1.6 1 1 0 1 1 1 1 AAA domain SRP54 PF00448.17 gi|557693476|ref|YP_008796530.1| - 0.004 16.6 0.0 0.17 11.2 0.0 2.2 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain AAA_18 PF13238.1 gi|557693476|ref|YP_008796530.1| - 0.0061 16.8 0.1 0.046 14.0 0.1 2.4 2 1 0 2 2 2 1 AAA domain AAA_19 PF13245.1 gi|557693476|ref|YP_008796530.1| - 0.0083 15.8 0.1 0.017 14.8 0.1 1.4 1 0 0 1 1 1 1 Part of AAA domain AAA_16 PF13191.1 gi|557693476|ref|YP_008796530.1| - 0.072 13.0 0.0 0.11 12.4 0.0 1.4 1 0 0 1 1 1 0 AAA ATPase domain RNA_helicase PF00910.17 gi|557693476|ref|YP_008796530.1| - 0.073 13.2 0.0 0.24 11.6 0.0 1.8 2 0 0 2 2 2 0 RNA helicase ATP_bind_1 PF03029.12 gi|557693476|ref|YP_008796530.1| - 0.088 12.3 0.1 0.96 8.9 0.0 2.1 1 1 0 1 1 1 0 Conserved hypothetical ATP binding protein Laps PF10169.4 gi|557693477|ref|YP_008796531.1| - 1.5 9.0 4.7 0.69 10.1 0.1 2.0 1 1 1 2 2 2 0 Learning-associated protein PQQ PF01011.16 gi|557693478|ref|YP_008796532.1| - 0.0004 19.7 0.8 0.13 11.8 0.3 3.7 3 0 0 3 3 3 1 PQQ enzyme repeat PQQ_2 PF13360.1 gi|557693478|ref|YP_008796532.1| - 0.0024 17.3 0.0 0.55 9.6 0.0 3.1 2 2 1 3 3 3 2 PQQ-like domain LSM14 PF12701.2 gi|557693478|ref|YP_008796532.1| - 0.046 13.5 0.0 0.1 12.4 0.0 1.5 1 0 0 1 1 1 0 Scd6-like Sm domain PQQ_3 PF13570.1 gi|557693478|ref|YP_008796532.1| - 7.8 6.9 12.6 0.31 11.3 0.2 4.5 5 1 0 5 5 5 0 PQQ-like domain DUF559 PF04480.7 gi|557693479|ref|YP_008796533.1| - 0.018 14.6 0.1 0.023 14.3 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF559) AAA_21 PF13304.1 gi|557693481|ref|YP_008796535.1| - 6.4e-24 85.4 0.5 2.1e-23 83.7 0.4 1.7 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|557693481|ref|YP_008796535.1| - 2.3e-23 82.9 0.5 8e-14 51.5 0.1 2.3 1 1 1 2 2 2 2 AAA ATPase domain SMC_N PF02463.14 gi|557693481|ref|YP_008796535.1| - 1.6e-09 37.2 0.5 6.8e-07 28.7 0.1 2.3 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.1 gi|557693481|ref|YP_008796535.1| - 4.2e-08 33.7 0.2 1.2e-07 32.2 0.1 1.9 1 1 0 1 1 1 1 AAA domain DUF2813 PF11398.3 gi|557693481|ref|YP_008796535.1| - 7e-08 31.9 1.3 3.2e-06 26.4 0.1 2.2 2 0 0 2 2 2 1 Protein of unknown function (DUF2813) DUF3696 PF12476.3 gi|557693481|ref|YP_008796535.1| - 2.5e-05 24.1 0.0 0.00011 22.1 0.0 2.1 2 0 0 2 2 2 1 Protein of unknown function (DUF3696) Arch_ATPase PF01637.13 gi|557693481|ref|YP_008796535.1| - 0.00011 21.9 0.3 0.001 18.8 0.0 2.3 2 1 0 2 2 2 1 Archaeal ATPase ABC_tran PF00005.22 gi|557693481|ref|YP_008796535.1| - 0.00026 21.3 0.0 0.00054 20.2 0.0 1.6 1 0 0 1 1 1 1 ABC transporter AAA_29 PF13555.1 gi|557693481|ref|YP_008796535.1| - 0.00084 18.8 0.1 0.0034 16.8 0.0 2.0 2 0 0 2 2 2 1 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|557693481|ref|YP_008796535.1| - 0.02 14.8 0.2 0.055 13.4 0.0 1.7 2 0 0 2 2 2 0 AAA ATPase domain AAA_13 PF13166.1 gi|557693481|ref|YP_008796535.1| - 0.027 12.9 0.2 1.8 6.9 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_14 PF13173.1 gi|557693481|ref|YP_008796535.1| - 0.028 14.3 0.0 0.5 10.2 0.0 2.7 2 1 0 2 2 2 0 AAA domain DUF72 PF01904.13 gi|557693482|ref|YP_008796536.1| - 4.2e-33 115.0 0.0 6.5e-33 114.4 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function DUF72 DUF72 PF01904.13 gi|557693483|ref|YP_008796537.1| - 3e-64 216.9 0.0 4.1e-64 216.4 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function DUF72 CarboxypepD_reg PF13620.1 gi|557693485|ref|YP_008796539.1| - 1.1e-22 79.8 20.5 0.00017 21.5 0.3 8.4 7 1 1 8 8 8 6 Carboxypeptidase regulatory-like domain Y_Y_Y PF07495.8 gi|557693485|ref|YP_008796539.1| - 8.5e-09 35.0 0.1 0.63 9.8 0.0 5.3 5 0 0 5 5 5 3 Y_Y_Y domain DUF4198 PF10670.4 gi|557693485|ref|YP_008796539.1| - 0.00039 20.4 1.2 0.15 12.0 0.0 3.8 4 0 0 4 4 4 1 Domain of unknown function (DUF4198) DUF2012 PF09430.5 gi|557693485|ref|YP_008796539.1| - 0.00054 19.8 0.7 8.7 6.2 0.0 4.2 4 0 0 4 4 4 1 Protein of unknown function (DUF2012) FlgD_ig PF13860.1 gi|557693485|ref|YP_008796539.1| - 0.00071 19.2 1.7 7.8 6.3 0.0 5.8 5 1 1 6 6 6 1 FlgD Ig-like domain DUF4480 PF13715.1 gi|557693485|ref|YP_008796539.1| - 0.00085 19.3 0.3 2 8.5 0.0 5.1 7 0 0 7 7 7 1 Domain of unknown function (DUF4480) Cna_B PF05738.8 gi|557693485|ref|YP_008796539.1| - 0.0011 18.7 1.2 12 5.7 0.0 4.9 6 0 0 6 6 6 1 Cna protein B-type domain Big_3_4 PF13754.1 gi|557693485|ref|YP_008796539.1| - 0.015 15.5 0.0 56 4.1 0.0 4.9 4 0 0 4 4 4 0 Bacterial Ig-like domain (group 3) DUF4397 PF14344.1 gi|557693485|ref|YP_008796539.1| - 0.051 13.9 0.6 2.4 8.4 0.0 3.4 3 0 0 3 3 3 0 Domain of unknown function (DUF4397) HIG_1_N PF04588.8 gi|557693485|ref|YP_008796539.1| - 0.079 12.7 0.2 0.19 11.5 0.1 1.7 1 0 0 1 1 1 0 Hypoxia induced protein conserved region HNF-1B_C PF04812.8 gi|557693486|ref|YP_008796540.1| - 0.075 12.2 1.1 0.089 12.0 0.7 1.1 1 0 0 1 1 1 0 Hepatocyte nuclear factor 1 (HNF-1), beta isoform C terminus PSI_PsaJ PF01701.13 gi|557693486|ref|YP_008796540.1| - 2.2 8.1 6.0 0.86 9.4 1.9 2.0 2 0 0 2 2 2 0 Photosystem I reaction centre subunit IX / PsaJ DUF1625 PF07787.7 gi|557693486|ref|YP_008796540.1| - 4.7 6.3 6.0 5.4 6.1 4.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1625) PALP PF00291.20 gi|557693487|ref|YP_008796541.1| - 2.2e-70 237.2 1.9 2.7e-70 237.0 1.3 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme PA PF02225.17 gi|557693487|ref|YP_008796541.1| - 0.0055 16.3 0.3 0.012 15.2 0.2 1.5 1 0 0 1 1 1 1 PA domain HypA PF01155.14 gi|557693487|ref|YP_008796541.1| - 0.064 12.9 0.1 0.12 12.1 0.0 1.4 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family ACP_syn_III_C PF08541.5 gi|557693487|ref|YP_008796541.1| - 0.23 11.5 1.2 18 5.4 0.0 3.2 2 1 1 3 3 3 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal RtcB PF01139.12 gi|557693488|ref|YP_008796542.1| - 1.6e-138 462.2 0.1 2.1e-115 386.0 0.0 2.1 2 0 0 2 2 2 2 tRNA-splicing ligase RtcB Intein_splicing PF14890.1 gi|557693488|ref|YP_008796542.1| - 1.3e-11 44.0 0.1 8.9e-05 21.5 0.3 2.8 3 0 0 3 3 3 2 Intein splicing domain LAGLIDADG_3 PF14528.1 gi|557693488|ref|YP_008796542.1| - 1.4e-08 34.8 0.1 0.002 18.2 0.0 2.7 2 0 0 2 2 2 2 LAGLIDADG-like domain Hint_2 PF13403.1 gi|557693488|ref|YP_008796542.1| - 0.091 12.6 0.0 5.9 6.8 0.0 2.5 2 0 0 2 2 2 0 Hint domain Hom_end_hint PF05203.11 gi|557693488|ref|YP_008796542.1| - 0.15 11.7 0.0 0.34 10.6 0.0 1.6 1 0 0 1 1 1 0 Hom_end-associated Hint Aldedh PF00171.17 gi|557693489|ref|YP_008796543.1| - 1.5e-147 491.6 0.8 1.7e-147 491.5 0.6 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family DUF1487 PF07368.6 gi|557693489|ref|YP_008796543.1| - 5.9e-05 22.3 0.1 0.00019 20.7 0.0 1.8 2 0 0 2 2 2 1 Protein of unknown function (DUF1487) NERD PF08378.6 gi|557693490|ref|YP_008796544.1| - 0.00088 19.5 0.2 0.0035 17.6 0.0 2.1 1 1 0 2 2 2 1 Nuclease-related domain Takusan PF04822.8 gi|557693490|ref|YP_008796544.1| - 0.079 12.7 1.0 0.21 11.3 0.2 2.0 2 0 0 2 2 2 0 Takusan PIN PF01850.16 gi|557693492|ref|YP_008796546.1| - 6.1e-13 49.1 0.1 1.5e-12 47.8 0.1 1.6 1 1 0 1 1 1 1 PIN domain DUF217 PF02697.9 gi|557693493|ref|YP_008796547.1| - 8.2e-05 22.7 3.8 9e-05 22.6 2.6 1.0 1 0 0 1 1 1 1 Uncharacterized ACR, COG1753 AsnC_trans_reg PF01037.16 gi|557693494|ref|YP_008796548.1| - 4.2e-16 58.4 0.0 6.4e-16 57.8 0.0 1.2 1 0 0 1 1 1 1 AsnC family HTH_24 PF13412.1 gi|557693494|ref|YP_008796548.1| - 1.3e-15 56.4 0.2 2.4e-15 55.6 0.1 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.1 gi|557693494|ref|YP_008796548.1| - 3.7e-14 51.9 1.1 6.5e-14 51.1 0.7 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain Arc_trans_TRASH PF08394.5 gi|557693494|ref|YP_008796548.1| - 1.2e-07 31.7 4.0 2.2e-07 30.9 2.8 1.5 1 0 0 1 1 1 1 Archaeal TRASH domain MarR PF01047.17 gi|557693494|ref|YP_008796548.1| - 1.8e-07 30.7 0.1 3.8e-07 29.7 0.0 1.5 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.2 gi|557693494|ref|YP_008796548.1| - 9.5e-06 25.1 0.1 1.6e-05 24.4 0.1 1.4 1 0 0 1 1 1 1 MarR family zf-FCS PF06467.9 gi|557693494|ref|YP_008796548.1| - 4.6e-05 22.9 0.9 6.9e-05 22.4 0.3 1.6 2 0 0 2 2 2 1 MYM-type Zinc finger with FCS sequence motif HTH_11 PF08279.7 gi|557693494|ref|YP_008796548.1| - 0.00031 20.3 0.1 0.0006 19.3 0.1 1.5 1 0 0 1 1 1 1 HTH domain GntR PF00392.16 gi|557693494|ref|YP_008796548.1| - 0.002 17.5 0.1 0.0038 16.6 0.1 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family ATPase-cat_bd PF12156.3 gi|557693494|ref|YP_008796548.1| - 0.0026 18.2 1.5 0.0046 17.4 1.0 1.4 1 0 0 1 1 1 1 Putative metal-binding domain of cation transport ATPase HTH_DeoR PF08220.7 gi|557693494|ref|YP_008796548.1| - 0.0029 17.0 0.1 0.0057 16.1 0.1 1.5 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain YHS PF04945.8 gi|557693494|ref|YP_008796548.1| - 0.0038 17.0 0.1 0.0065 16.2 0.1 1.3 1 0 0 1 1 1 1 YHS domain HTH_IclR PF09339.5 gi|557693494|ref|YP_008796548.1| - 0.0096 15.4 0.0 0.016 14.7 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_20 PF12840.2 gi|557693494|ref|YP_008796548.1| - 0.011 15.5 0.0 0.02 14.6 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain TrmB PF01978.14 gi|557693494|ref|YP_008796548.1| - 0.013 15.1 0.0 0.046 13.4 0.0 1.8 1 1 1 2 2 2 0 Sugar-specific transcriptional regulator TrmB EAP30 PF04157.11 gi|557693494|ref|YP_008796548.1| - 0.046 12.8 0.0 0.071 12.2 0.0 1.3 1 0 0 1 1 1 0 EAP30/Vps36 family Fe_dep_repress PF01325.14 gi|557693494|ref|YP_008796548.1| - 0.095 12.6 0.0 0.18 11.7 0.0 1.4 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain Mga PF05043.8 gi|557693494|ref|YP_008796548.1| - 0.13 12.5 0.0 0.26 11.5 0.0 1.4 1 0 0 1 1 1 0 Mga helix-turn-helix domain DUF716 PF04819.7 gi|557693495|ref|YP_008796549.1| - 0.02 14.3 1.1 0.023 14.1 0.7 1.0 1 0 0 1 1 1 0 Family of unknown function (DUF716) SSF PF00474.12 gi|557693495|ref|YP_008796549.1| - 0.076 11.6 2.0 0.087 11.4 1.4 1.0 1 0 0 1 1 1 0 Sodium:solute symporter family DUF4231 PF14015.1 gi|557693495|ref|YP_008796549.1| - 0.13 12.2 3.5 0.16 11.9 2.4 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF4231) E1-E2_ATPase PF00122.15 gi|557693496|ref|YP_008796550.1| - 1.1e-60 204.5 1.5 2.2e-60 203.5 1.0 1.5 1 0 0 1 1 1 1 E1-E2 ATPase Hydrolase PF00702.21 gi|557693496|ref|YP_008796550.1| - 2.7e-52 178.2 2.4 5.4e-52 177.3 1.7 1.5 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HMA PF00403.21 gi|557693496|ref|YP_008796550.1| - 3.2e-32 110.4 0.5 1.2e-14 54.1 0.0 2.7 2 0 0 2 2 2 2 Heavy-metal-associated domain HAD PF12710.2 gi|557693496|ref|YP_008796550.1| - 2.7e-18 66.8 0.0 5.4e-18 65.8 0.0 1.5 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|557693496|ref|YP_008796550.1| - 3.1e-07 30.2 0.5 0.0032 17.0 0.1 2.5 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase DUF59 PF01883.14 gi|557693496|ref|YP_008796550.1| - 0.0039 17.1 0.1 6 6.9 0.1 3.1 2 0 0 2 2 2 2 Domain of unknown function DUF59 Hydrolase_6 PF13344.1 gi|557693496|ref|YP_008796550.1| - 0.0088 15.9 0.0 0.1 12.4 0.0 2.8 2 1 0 2 2 2 1 Haloacid dehalogenase-like hydrolase DUF997 PF06196.7 gi|557693496|ref|YP_008796550.1| - 0.019 14.4 0.2 0.019 14.4 0.2 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF997) LolB PF03550.9 gi|557693496|ref|YP_008796550.1| - 0.14 11.7 0.0 0.27 10.8 0.0 1.4 1 0 0 1 1 1 0 Outer membrane lipoprotein LolB Fer2_BFD PF04324.10 gi|557693496|ref|YP_008796550.1| - 0.25 11.4 3.8 2.1 8.4 0.2 3.4 3 0 0 3 3 3 0 BFD-like [2Fe-2S] binding domain YHS PF04945.8 gi|557693497|ref|YP_008796551.1| - 5.1e-19 67.8 1.0 6.1e-19 67.5 0.7 1.0 1 0 0 1 1 1 1 YHS domain Ribosomal_L24e PF01246.15 gi|557693497|ref|YP_008796551.1| - 0.00033 20.4 0.3 0.00038 20.2 0.2 1.1 1 0 0 1 1 1 1 Ribosomal protein L24e Arc_trans_TRASH PF08394.5 gi|557693497|ref|YP_008796551.1| - 0.002 18.2 0.2 0.0032 17.5 0.1 1.4 1 1 0 1 1 1 1 Archaeal TRASH domain ATPase-cat_bd PF12156.3 gi|557693497|ref|YP_008796551.1| - 0.062 13.8 0.2 0.072 13.6 0.1 1.1 1 0 0 1 1 1 0 Putative metal-binding domain of cation transport ATPase zf-FCS PF06467.9 gi|557693497|ref|YP_008796551.1| - 0.098 12.3 1.2 0.15 11.7 0.6 1.5 1 1 0 1 1 1 0 MYM-type Zinc finger with FCS sequence motif DUF2116 PF09889.4 gi|557693497|ref|YP_008796551.1| - 0.32 10.8 3.2 0.3 10.8 0.7 2.0 2 1 0 2 2 2 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) RHH_1 PF01402.16 gi|557693498|ref|YP_008796552.1| - 1.8e-06 27.5 2.3 1.8e-06 27.5 1.6 2.2 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family CcdA PF07362.7 gi|557693498|ref|YP_008796552.1| - 0.00041 20.1 1.2 0.00066 19.5 0.6 1.5 1 1 1 2 2 2 1 Post-segregation antitoxin CcdA GvpK PF05121.7 gi|557693498|ref|YP_008796552.1| - 0.014 15.1 4.9 0.017 14.9 3.4 1.1 1 0 0 1 1 1 0 Gas vesicle protein K ALMT PF11744.3 gi|557693498|ref|YP_008796552.1| - 0.018 13.7 0.2 0.02 13.5 0.1 1.0 1 0 0 1 1 1 0 Aluminium activated malate transporter RHH_3 PF12651.2 gi|557693498|ref|YP_008796552.1| - 0.022 14.4 0.5 0.022 14.4 0.3 1.8 1 1 1 2 2 2 0 Ribbon-helix-helix domain TelA PF05816.6 gi|557693498|ref|YP_008796552.1| - 0.028 13.1 0.2 0.03 13.0 0.1 1.2 1 0 0 1 1 1 0 Toxic anion resistance protein (TelA) DegS PF05384.6 gi|557693498|ref|YP_008796552.1| - 0.053 12.7 2.9 0.062 12.5 2.0 1.1 1 0 0 1 1 1 0 Sensor protein DegS PMC2NT PF08066.7 gi|557693498|ref|YP_008796552.1| - 0.062 13.6 0.0 0.095 13.0 0.0 1.2 1 0 0 1 1 1 0 PMC2NT (NUC016) domain DUF3619 PF12279.3 gi|557693498|ref|YP_008796552.1| - 0.087 12.9 0.8 0.093 12.8 0.6 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3619) Enkurin PF13864.1 gi|557693498|ref|YP_008796552.1| - 0.088 13.0 1.9 0.13 12.4 1.3 1.3 1 0 0 1 1 1 0 Calmodulin-binding Prefoldin PF02996.12 gi|557693498|ref|YP_008796552.1| - 0.1 12.2 1.4 0.49 10.0 0.3 1.9 1 1 1 2 2 2 0 Prefoldin subunit CAP18_C PF12153.3 gi|557693498|ref|YP_008796552.1| - 0.14 11.8 0.5 0.14 11.8 0.4 2.1 2 0 0 2 2 2 0 LPS binding domain of CAP18 (C terminal) BAG PF02179.11 gi|557693498|ref|YP_008796552.1| - 0.36 10.9 7.2 3.2 7.9 5.0 2.0 1 1 0 1 1 1 0 BAG domain G-gamma PF00631.17 gi|557693498|ref|YP_008796552.1| - 2.2 8.0 5.7 0.47 10.2 0.3 2.1 1 1 1 2 2 2 0 GGL domain CRF PF00473.12 gi|557693498|ref|YP_008796552.1| - 3.6 7.7 10.6 0.53 10.4 4.0 1.9 2 0 0 2 2 2 0 Corticotropin-releasing factor family Nitrate_red_del PF02613.10 gi|557693499|ref|YP_008796553.1| - 0.00018 21.3 0.0 0.0003 20.6 0.0 1.3 1 0 0 1 1 1 1 Nitrate reductase delta subunit Molybdopterin PF00384.17 gi|557693500|ref|YP_008796554.1| - 2.8e-24 85.6 0.0 1.6e-19 69.9 0.0 2.8 2 1 0 2 2 2 2 Molybdopterin oxidoreductase Molydop_binding PF01568.16 gi|557693500|ref|YP_008796554.1| - 2.1e-11 43.5 0.0 5.5e-11 42.2 0.0 1.7 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.11 gi|557693500|ref|YP_008796554.1| - 2.1e-07 30.6 1.7 9.8e-06 25.2 1.2 2.4 1 1 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain NrfD PF03916.9 gi|557693501|ref|YP_008796555.1| - 4.2e-44 151.2 22.8 4.2e-44 151.2 15.8 1.3 2 0 0 2 2 2 1 Polysulphide reductase, NrfD DUF3464 PF11947.3 gi|557693501|ref|YP_008796555.1| - 0.067 12.6 6.3 0.019 14.4 2.2 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF3464) Fer4_11 PF13247.1 gi|557693502|ref|YP_008796556.1| - 1.8e-29 101.5 9.5 1.8e-29 101.5 6.6 2.1 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|557693502|ref|YP_008796556.1| - 1.1e-17 64.1 30.5 1.7e-09 37.9 7.2 3.2 2 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|557693502|ref|YP_008796556.1| - 4.6e-15 55.6 28.1 8.2e-10 38.8 7.3 2.7 2 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|557693502|ref|YP_008796556.1| - 4.2e-13 48.8 48.2 1.5e-07 31.0 6.3 3.0 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|557693502|ref|YP_008796556.1| - 8.7e-13 47.3 37.6 2e-05 24.2 1.4 4.9 4 1 0 4 4 4 3 4Fe-4S binding domain Fer4_6 PF12837.2 gi|557693502|ref|YP_008796556.1| - 1.5e-12 46.7 45.2 4.2e-05 23.2 2.4 5.3 5 1 0 5 5 5 4 4Fe-4S binding domain Fer4 PF00037.22 gi|557693502|ref|YP_008796556.1| - 2.5e-12 45.8 44.7 6.3e-07 28.7 2.7 6.0 5 1 0 5 5 5 4 4Fe-4S binding domain Fer4_3 PF12798.2 gi|557693502|ref|YP_008796556.1| - 3.7e-11 42.7 49.4 0.00018 21.8 2.0 4.6 5 0 0 5 5 4 3 4Fe-4S binding domain Fer4_17 PF13534.1 gi|557693502|ref|YP_008796556.1| - 2.4e-06 27.7 21.8 0.26 11.6 0.4 4.5 3 1 0 3 3 3 3 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|557693502|ref|YP_008796556.1| - 2.5e-06 27.3 27.6 0.011 15.7 7.3 3.3 2 2 0 2 2 2 2 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|557693502|ref|YP_008796556.1| - 8.4e-06 26.1 22.0 0.0059 17.0 1.4 4.3 4 0 0 4 4 4 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|557693502|ref|YP_008796556.1| - 1.6e-05 25.5 23.7 0.42 11.3 2.9 4.5 4 1 0 4 4 4 4 4Fe-4S double cluster binding domain Fer4_21 PF14697.1 gi|557693502|ref|YP_008796556.1| - 0.00023 20.9 28.3 0.0086 15.9 5.6 3.6 2 2 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|557693502|ref|YP_008796556.1| - 0.0015 18.7 39.8 0.015 15.5 2.2 4.7 5 1 0 5 5 4 3 4Fe-4S binding domain Fer4_15 PF13459.1 gi|557693502|ref|YP_008796556.1| - 1.1 9.8 28.4 2.9 8.5 7.9 4.2 3 1 1 4 4 4 0 4Fe-4S single cluster domain Fer4_20 PF14691.1 gi|557693502|ref|YP_008796556.1| - 5.7 6.5 23.4 1.8 8.2 2.5 4.1 2 1 2 4 4 4 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Ribosom_S12_S23 PF00164.20 gi|557693503|ref|YP_008796557.1| - 1.6e-36 124.4 0.2 1.7e-36 124.3 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein S12/S23 Mob_synth_C PF06463.8 gi|557693504|ref|YP_008796558.1| - 1.2e-32 112.2 0.0 1.8e-32 111.7 0.0 1.3 1 0 0 1 1 1 1 Molybdenum Cofactor Synthesis C Radical_SAM PF04055.16 gi|557693504|ref|YP_008796558.1| - 2.1e-28 99.5 0.2 3.9e-28 98.7 0.1 1.5 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|557693504|ref|YP_008796558.1| - 2.4e-07 30.8 0.0 4.7e-07 29.8 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|557693504|ref|YP_008796558.1| - 3.8e-07 30.2 0.0 7.2e-07 29.4 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain BATS PF06968.8 gi|557693504|ref|YP_008796558.1| - 0.067 13.0 0.0 0.13 12.1 0.0 1.4 1 0 0 1 1 1 0 Biotin and Thiamin Synthesis associated domain Cytochrom_B_N_2 PF13631.1 gi|557693505|ref|YP_008796559.1| - 5.4e-26 91.3 10.0 5.4e-26 91.3 6.9 3.5 4 1 0 4 4 4 1 Cytochrome b(N-terminal)/b6/petB Cytochrom_B_C PF00032.12 gi|557693505|ref|YP_008796559.1| - 8.1e-06 26.0 4.2 8.1e-06 26.0 2.9 3.4 4 1 1 5 5 5 1 Cytochrome b(C-terminal)/b6/petD DUF4405 PF14358.1 gi|557693505|ref|YP_008796559.1| - 0.0012 18.8 1.1 0.0012 18.8 0.8 4.7 6 1 0 6 6 6 1 Domain of unknown function (DUF4405) OTCace_N PF02729.16 gi|557693506|ref|YP_008796560.1| - 8.2e-41 138.9 0.0 1.3e-40 138.3 0.0 1.3 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain OTCace PF00185.19 gi|557693506|ref|YP_008796560.1| - 2.3e-34 118.5 0.0 9.8e-33 113.2 0.0 2.1 2 0 0 2 2 2 2 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain TPP_enzyme_C PF02775.16 gi|557693508|ref|YP_008796562.1| - 8.8e-19 67.5 0.0 1.3e-18 67.0 0.0 1.2 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain POR_N PF01855.14 gi|557693509|ref|YP_008796563.1| - 5.5e-57 192.9 0.0 7e-57 192.5 0.0 1.1 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Transketolase_C PF02780.15 gi|557693509|ref|YP_008796563.1| - 0.06 13.2 0.0 0.12 12.3 0.0 1.5 1 0 0 1 1 1 0 Transketolase, C-terminal domain POR PF01558.13 gi|557693510|ref|YP_008796564.1| - 2.8e-28 98.9 0.0 3.7e-28 98.5 0.0 1.1 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase Fer4 PF00037.22 gi|557693510|ref|YP_008796564.1| - 5.7e-12 44.7 16.4 6.8e-06 25.4 3.3 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|557693510|ref|YP_008796564.1| - 5.1e-09 35.5 14.5 0.00013 21.7 2.5 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|557693510|ref|YP_008796564.1| - 2.4e-08 33.7 9.6 4.2e-08 32.9 6.7 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|557693510|ref|YP_008796564.1| - 1.5e-07 31.6 10.9 3e-07 30.6 7.5 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|557693510|ref|YP_008796564.1| - 7.1e-07 28.9 10.1 1.5e-06 27.8 7.1 1.5 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|557693510|ref|YP_008796564.1| - 1.9e-06 27.5 15.6 0.0017 18.1 2.4 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|557693510|ref|YP_008796564.1| - 2.2e-06 28.3 8.0 0.0037 17.9 0.7 2.3 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_9 PF13187.1 gi|557693510|ref|YP_008796564.1| - 0.00017 21.7 11.2 0.00029 21.0 7.8 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|557693510|ref|YP_008796564.1| - 0.0039 17.4 4.3 0.52 10.7 0.1 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|557693510|ref|YP_008796564.1| - 0.027 14.7 13.1 0.054 13.8 2.4 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_8 PF13183.1 gi|557693510|ref|YP_008796564.1| - 0.059 13.4 11.0 0.4 10.7 7.8 2.0 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|557693510|ref|YP_008796564.1| - 0.11 13.0 12.3 1.3 9.6 1.4 2.7 1 1 1 2 2 2 0 4Fe-4S single cluster domain Fer4_13 PF13370.1 gi|557693510|ref|YP_008796564.1| - 2.5 8.5 10.4 1.6 9.1 0.9 2.6 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_18 PF13746.1 gi|557693510|ref|YP_008796564.1| - 7.2 7.1 14.2 1.5 9.2 1.8 2.4 1 1 1 2 2 2 0 4Fe-4S dicluster domain ATP-grasp_5 PF13549.1 gi|557693511|ref|YP_008796565.1| - 2.4e-49 167.5 0.0 4.3e-49 166.7 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain Succ_CoA_lig PF13607.1 gi|557693511|ref|YP_008796565.1| - 2.4e-42 143.7 1.4 2.4e-42 143.7 1.0 2.0 2 0 0 2 2 2 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.1 gi|557693511|ref|YP_008796565.1| - 3.1e-19 69.2 1.1 7.4e-18 64.8 0.3 2.9 3 0 0 3 3 3 1 CoA binding domain CoA_binding PF02629.14 gi|557693511|ref|YP_008796565.1| - 6.8e-11 42.5 0.3 7.8e-08 32.7 0.1 3.2 3 0 0 3 3 3 2 CoA binding domain NAD_Gly3P_dh_N PF01210.18 gi|557693511|ref|YP_008796565.1| - 0.045 13.4 0.0 0.12 12.0 0.0 1.7 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NAD_binding_10 PF13460.1 gi|557693511|ref|YP_008796565.1| - 0.08 12.9 1.5 0.29 11.1 1.1 2.0 1 0 0 1 1 1 0 NADH(P)-binding DUF350 PF03994.9 gi|557693512|ref|YP_008796566.1| - 1.1e-05 25.0 12.6 0.00014 21.5 0.8 3.3 2 1 0 2 2 2 2 Domain of Unknown Function (DUF350) VPEP PF07589.6 gi|557693513|ref|YP_008796567.1| - 0.14 12.0 0.4 0.14 12.0 0.2 5.0 5 0 0 5 5 5 0 PEP-CTERM motif DUF4179 PF13786.1 gi|557693514|ref|YP_008796568.1| - 0.0003 20.9 0.0 0.00083 19.5 0.0 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF4179) DZR PF12773.2 gi|557693514|ref|YP_008796568.1| - 0.042 13.6 0.9 0.073 12.9 0.6 1.3 1 0 0 1 1 1 0 Double zinc ribbon TOBE_2 PF08402.5 gi|557693514|ref|YP_008796568.1| - 0.089 12.7 2.8 6.2 6.8 0.0 2.5 2 0 0 2 2 2 0 TOBE domain ETRAMP PF09716.5 gi|557693514|ref|YP_008796568.1| - 0.2 11.6 0.3 0.42 10.5 0.0 1.7 2 0 0 2 2 2 0 Malarial early transcribed membrane protein (ETRAMP) zf-ribbon_3 PF13248.1 gi|557693514|ref|YP_008796568.1| - 0.41 9.9 2.6 0.74 9.1 1.8 1.4 1 0 0 1 1 1 0 zinc-ribbon domain zf-HIT PF04438.11 gi|557693514|ref|YP_008796568.1| - 0.99 9.1 3.9 1.5 8.5 2.7 1.3 1 0 0 1 1 1 0 HIT zinc finger SKG6 PF08693.5 gi|557693514|ref|YP_008796568.1| - 2.6 7.4 11.5 0.19 11.0 2.1 2.7 2 0 0 2 2 2 0 Transmembrane alpha-helix domain Peptidase_M6 PF05547.6 gi|557693515|ref|YP_008796569.1| - 0.014 13.4 5.9 0.61 8.0 0.5 2.8 2 1 1 3 3 3 0 Immune inhibitor A peptidase M6 Gram_pos_anchor PF00746.16 gi|557693515|ref|YP_008796569.1| - 3.8 7.4 5.1 0.44 10.4 0.1 2.0 2 0 0 2 2 2 0 Gram positive anchor RimK PF08443.6 gi|557693516|ref|YP_008796570.1| - 3e-44 150.7 0.0 3.9e-44 150.4 0.0 1.1 1 0 0 1 1 1 1 RimK-like ATP-grasp domain ATP-grasp_4 PF13535.1 gi|557693516|ref|YP_008796570.1| - 9.8e-13 48.2 0.0 1.4e-12 47.7 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain GSH-S_ATP PF02955.11 gi|557693516|ref|YP_008796570.1| - 1e-09 37.7 0.0 1.6e-09 37.1 0.0 1.3 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|557693516|ref|YP_008796570.1| - 7.3e-09 34.8 0.0 1.1e-08 34.2 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon ATP-grasp_3 PF02655.9 gi|557693516|ref|YP_008796570.1| - 4.8e-05 23.2 0.0 7.9e-05 22.5 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain DUF4343 PF14243.1 gi|557693516|ref|YP_008796570.1| - 0.011 15.5 0.1 0.061 13.1 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4343) ATP-grasp PF02222.17 gi|557693516|ref|YP_008796570.1| - 0.012 14.9 0.0 0.021 14.1 0.0 1.4 1 0 0 1 1 1 0 ATP-grasp domain Dala_Dala_lig_C PF07478.8 gi|557693516|ref|YP_008796570.1| - 0.012 14.9 0.0 0.027 13.8 0.0 1.6 2 0 0 2 2 2 0 D-ala D-ala ligase C-terminus Peptidase_M54 PF07998.6 gi|557693517|ref|YP_008796571.1| - 5.4e-25 88.2 0.0 7.4e-25 87.8 0.0 1.2 1 0 0 1 1 1 1 Peptidase family M54 Peptidase_M66 PF10462.4 gi|557693517|ref|YP_008796571.1| - 0.00038 19.4 0.0 0.00054 18.9 0.0 1.2 1 0 0 1 1 1 1 Peptidase M66 Peptidase_M10 PF00413.19 gi|557693517|ref|YP_008796571.1| - 0.00066 19.4 0.2 0.00076 19.2 0.1 1.3 1 1 0 1 1 1 1 Matrixin Metallopep PF12044.3 gi|557693517|ref|YP_008796571.1| - 0.065 11.6 0.3 0.11 10.9 0.2 1.3 1 0 0 1 1 1 0 Putative peptidase family AAA_18 PF13238.1 gi|557693518|ref|YP_008796572.1| - 2.9e-17 63.1 0.1 9.6e-17 61.5 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA_17 PF13207.1 gi|557693518|ref|YP_008796572.1| - 1.2e-10 42.3 0.1 3.4e-10 40.7 0.0 1.8 1 1 1 2 2 2 1 AAA domain SKI PF01202.17 gi|557693518|ref|YP_008796572.1| - 4.9e-08 32.9 0.3 3.5e-07 30.2 0.2 2.1 1 1 0 1 1 1 1 Shikimate kinase AAA PF00004.24 gi|557693518|ref|YP_008796572.1| - 2e-06 28.0 0.3 3.8e-05 23.9 0.2 2.3 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_33 PF13671.1 gi|557693518|ref|YP_008796572.1| - 8.2e-05 22.5 1.0 0.0053 16.6 0.1 2.4 1 1 1 2 2 2 1 AAA domain AAA_28 PF13521.1 gi|557693518|ref|YP_008796572.1| - 0.00068 19.6 0.1 0.0013 18.6 0.0 1.6 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|557693518|ref|YP_008796572.1| - 0.00085 19.4 0.1 0.001 19.2 0.1 1.7 1 1 0 1 1 1 1 AAA domain Cytidylate_kin2 PF13189.1 gi|557693518|ref|YP_008796572.1| - 0.0011 18.9 0.1 0.0033 17.3 0.0 1.8 2 0 0 2 2 2 1 Cytidylate kinase-like family MobB PF03205.9 gi|557693518|ref|YP_008796572.1| - 0.0036 17.0 1.0 0.077 12.6 0.3 2.1 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B PRK PF00485.13 gi|557693518|ref|YP_008796572.1| - 0.0078 15.7 0.1 1.6 8.2 0.0 3.0 3 0 0 3 3 3 1 Phosphoribulokinase / Uridine kinase family RNA_helicase PF00910.17 gi|557693518|ref|YP_008796572.1| - 0.014 15.5 0.0 0.026 14.7 0.0 1.5 1 0 0 1 1 1 0 RNA helicase AAA_10 PF12846.2 gi|557693518|ref|YP_008796572.1| - 0.039 13.3 0.0 0.074 12.4 0.0 1.4 1 1 0 1 1 1 0 AAA-like domain Viral_helicase1 PF01443.13 gi|557693518|ref|YP_008796572.1| - 0.061 12.8 0.0 0.099 12.1 0.0 1.3 1 1 0 1 1 1 0 Viral (Superfamily 1) RNA helicase cwf21 PF08312.7 gi|557693518|ref|YP_008796572.1| - 0.09 12.6 0.3 0.2 11.5 0.2 1.6 1 0 0 1 1 1 0 cwf21 domain AAA_24 PF13479.1 gi|557693518|ref|YP_008796572.1| - 0.12 11.9 0.4 0.22 11.0 0.3 1.4 1 0 0 1 1 1 0 AAA domain UPF0079 PF02367.12 gi|557693518|ref|YP_008796572.1| - 0.13 11.9 0.0 0.31 10.6 0.0 1.7 2 0 0 2 2 2 0 Uncharacterised P-loop hydrolase UPF0079 AAA_16 PF13191.1 gi|557693518|ref|YP_008796572.1| - 0.15 12.0 2.9 2.2 8.2 2.0 2.3 1 1 0 1 1 1 0 AAA ATPase domain NTPase_1 PF03266.10 gi|557693518|ref|YP_008796572.1| - 0.35 10.5 4.7 0.19 11.4 0.5 2.2 2 1 0 2 2 2 0 NTPase ABC_tran PF00005.22 gi|557693519|ref|YP_008796573.1| - 1.5e-42 145.1 0.0 3.4e-21 75.9 0.0 2.6 2 0 0 2 2 2 2 ABC transporter AAA_21 PF13304.1 gi|557693519|ref|YP_008796573.1| - 3.2e-15 56.8 3.8 6.1e-07 29.6 0.6 4.2 2 2 1 3 3 3 2 AAA domain SMC_N PF02463.14 gi|557693519|ref|YP_008796573.1| - 4.9e-11 42.2 2.0 0.0037 16.5 0.0 4.1 4 0 0 4 4 4 2 RecF/RecN/SMC N terminal domain AAA_25 PF13481.1 gi|557693519|ref|YP_008796573.1| - 8.2e-08 31.8 1.5 3.1e-05 23.4 0.0 3.2 3 1 0 3 3 3 1 AAA domain Fer4 PF00037.22 gi|557693519|ref|YP_008796573.1| - 2.6e-07 29.9 3.5 2.6e-07 29.9 2.4 2.3 3 0 0 3 3 1 1 4Fe-4S binding domain RLI PF04068.10 gi|557693519|ref|YP_008796573.1| - 6.3e-07 28.8 1.9 1.5e-06 27.6 1.4 1.7 1 0 0 1 1 1 1 Possible Fer4-like domain in RNase L inhibitor, RLI Fer4_6 PF12837.2 gi|557693519|ref|YP_008796573.1| - 1.8e-06 27.5 12.1 0.0002 21.0 1.6 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain AAA_33 PF13671.1 gi|557693519|ref|YP_008796573.1| - 3e-06 27.1 0.5 0.11 12.3 0.0 3.9 2 2 0 2 2 2 2 AAA domain AAA_15 PF13175.1 gi|557693519|ref|YP_008796573.1| - 5.7e-06 25.6 0.0 0.15 11.0 0.0 3.9 4 0 0 4 4 4 1 AAA ATPase domain Fer4_10 PF13237.1 gi|557693519|ref|YP_008796573.1| - 2.8e-05 23.8 9.6 5.5e-05 22.8 6.7 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain AAA_22 PF13401.1 gi|557693519|ref|YP_008796573.1| - 8.3e-05 22.7 0.5 0.11 12.6 0.0 3.1 2 1 0 2 2 2 1 AAA domain AAA_29 PF13555.1 gi|557693519|ref|YP_008796573.1| - 0.00023 20.6 0.1 0.13 11.8 0.0 2.4 2 0 0 2 2 2 1 P-loop containing region of AAA domain AAA PF00004.24 gi|557693519|ref|YP_008796573.1| - 0.00028 21.0 0.0 0.41 10.8 0.0 2.6 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_23 PF13476.1 gi|557693519|ref|YP_008796573.1| - 0.00057 20.2 0.2 0.33 11.2 0.1 2.6 2 0 0 2 2 2 1 AAA domain NB-ARC PF00931.17 gi|557693519|ref|YP_008796573.1| - 0.00072 18.5 0.0 0.13 11.0 0.0 2.4 2 0 0 2 2 2 1 NB-ARC domain SbcCD_C PF13558.1 gi|557693519|ref|YP_008796573.1| - 0.00072 19.4 0.1 1.8 8.5 0.0 3.5 2 2 0 2 2 2 1 Putative exonuclease SbcCD, C subunit AAA_17 PF13207.1 gi|557693519|ref|YP_008796573.1| - 0.0012 19.6 3.0 0.27 12.0 0.2 3.2 3 1 0 3 3 2 1 AAA domain Fer4_7 PF12838.2 gi|557693519|ref|YP_008796573.1| - 0.0012 19.1 9.7 0.0023 18.2 1.0 2.3 1 1 0 2 2 2 1 4Fe-4S dicluster domain RNA_helicase PF00910.17 gi|557693519|ref|YP_008796573.1| - 0.0016 18.5 0.0 2 8.6 0.0 2.5 2 0 0 2 2 2 1 RNA helicase DUF258 PF03193.11 gi|557693519|ref|YP_008796573.1| - 0.002 17.3 0.0 0.66 9.1 0.0 2.4 2 0 0 2 2 2 1 Protein of unknown function, DUF258 Fer4_16 PF13484.1 gi|557693519|ref|YP_008796573.1| - 0.0035 18.0 0.1 0.0035 18.0 0.1 2.3 2 0 0 2 2 2 1 4Fe-4S double cluster binding domain Fer4_2 PF12797.2 gi|557693519|ref|YP_008796573.1| - 0.0038 17.0 12.4 0.0082 16.0 1.7 2.4 2 0 0 2 2 2 1 4Fe-4S binding domain AAA_16 PF13191.1 gi|557693519|ref|YP_008796573.1| - 0.004 17.1 0.4 0.54 10.2 0.0 2.6 2 1 0 2 2 2 1 AAA ATPase domain NACHT PF05729.7 gi|557693519|ref|YP_008796573.1| - 0.005 16.5 2.7 0.75 9.4 0.0 2.4 2 0 0 2 2 2 1 NACHT domain Fer4_21 PF14697.1 gi|557693519|ref|YP_008796573.1| - 0.0057 16.4 7.0 0.0099 15.7 4.8 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_11 PF13247.1 gi|557693519|ref|YP_008796573.1| - 0.0081 16.0 2.0 0.015 15.1 1.4 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain MobB PF03205.9 gi|557693519|ref|YP_008796573.1| - 0.0091 15.7 1.4 1 9.0 0.1 2.6 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B IstB_IS21 PF01695.12 gi|557693519|ref|YP_008796573.1| - 0.019 14.4 0.4 0.11 11.8 0.0 2.2 2 0 0 2 2 2 0 IstB-like ATP binding protein RuvB_N PF05496.7 gi|557693519|ref|YP_008796573.1| - 0.024 13.6 0.2 0.39 9.7 0.0 2.6 2 0 0 2 2 2 0 Holliday junction DNA helicase ruvB N-terminus Fer4_9 PF13187.1 gi|557693519|ref|YP_008796573.1| - 0.024 14.8 8.7 0.082 13.1 6.0 1.9 1 1 0 1 1 1 0 4Fe-4S dicluster domain Miro PF08477.8 gi|557693519|ref|YP_008796573.1| - 0.025 15.0 0.0 12 6.4 0.0 2.8 2 0 0 2 2 2 0 Miro-like protein AAA_18 PF13238.1 gi|557693519|ref|YP_008796573.1| - 0.027 14.7 0.4 9.9 6.4 0.0 3.3 3 1 0 3 3 3 0 AAA domain AAA_14 PF13173.1 gi|557693519|ref|YP_008796573.1| - 0.032 14.1 0.4 5.1 7.0 0.0 3.2 4 0 0 4 4 3 0 AAA domain VirE PF05272.6 gi|557693519|ref|YP_008796573.1| - 0.043 13.2 0.0 1.8 7.9 0.0 2.3 2 0 0 2 2 2 0 Virulence-associated protein E ArgK PF03308.11 gi|557693519|ref|YP_008796573.1| - 0.048 12.4 0.4 1.4 7.5 0.0 2.2 2 0 0 2 2 2 0 ArgK protein Fer4_8 PF13183.1 gi|557693519|ref|YP_008796573.1| - 0.17 11.9 5.1 0.51 10.3 3.6 1.6 1 1 0 1 1 1 0 4Fe-4S dicluster domain AAA_10 PF12846.2 gi|557693519|ref|YP_008796573.1| - 0.18 11.1 1.9 18 4.6 0.2 2.9 4 0 0 4 4 3 0 AAA-like domain Fer4_15 PF13459.1 gi|557693519|ref|YP_008796573.1| - 0.19 12.3 7.0 0.75 10.4 0.9 2.9 2 0 0 2 2 2 0 4Fe-4S single cluster domain AAA_13 PF13166.1 gi|557693519|ref|YP_008796573.1| - 0.27 9.6 0.0 0.97 7.8 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_24 PF13479.1 gi|557693519|ref|YP_008796573.1| - 0.29 10.6 3.1 3.4 7.1 0.1 2.4 2 0 0 2 2 2 0 AAA domain SRP54 PF00448.17 gi|557693519|ref|YP_008796573.1| - 0.47 9.8 3.3 2.8 7.3 0.1 2.3 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain NTPase_1 PF03266.10 gi|557693519|ref|YP_008796573.1| - 0.71 9.5 4.7 11 5.7 0.1 3.4 4 0 0 4 4 3 0 NTPase Fer4_4 PF12800.2 gi|557693519|ref|YP_008796573.1| - 0.84 10.1 11.2 0.24 11.8 1.9 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_17 PF13534.1 gi|557693519|ref|YP_008796573.1| - 1.7 9.0 6.2 0.43 10.9 1.2 1.9 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|557693519|ref|YP_008796573.1| - 2.8 8.7 11.0 0.11 13.1 2.4 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain AAA PF00004.24 gi|557693520|ref|YP_008796574.1| - 2.6e-101 335.0 0.0 1e-49 168.0 0.0 2.5 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) CDC48_N PF02359.13 gi|557693520|ref|YP_008796574.1| - 9.1e-30 102.4 0.1 4.4e-29 100.2 0.1 2.2 2 0 0 2 2 1 1 Cell division protein 48 (CDC48), N-terminal domain AAA_16 PF13191.1 gi|557693520|ref|YP_008796574.1| - 6.5e-16 58.8 0.7 2.5e-06 27.6 0.0 3.5 3 1 0 3 3 3 2 AAA ATPase domain AAA_22 PF13401.1 gi|557693520|ref|YP_008796574.1| - 1.1e-14 54.7 0.4 9.1e-06 25.8 0.0 4.2 2 2 1 3 3 3 2 AAA domain AAA_2 PF07724.9 gi|557693520|ref|YP_008796574.1| - 1.7e-14 54.0 0.0 9.3e-07 28.9 0.0 2.4 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) CDC48_2 PF02933.12 gi|557693520|ref|YP_008796574.1| - 4.9e-14 51.7 0.5 1.7e-13 49.9 0.4 2.0 1 0 0 1 1 1 1 Cell division protein 48 (CDC48), domain 2 RuvB_N PF05496.7 gi|557693520|ref|YP_008796574.1| - 5.8e-14 51.6 0.0 1.1e-06 27.9 0.0 2.7 2 1 0 2 2 2 2 Holliday junction DNA helicase ruvB N-terminus AAA_17 PF13207.1 gi|557693520|ref|YP_008796574.1| - 2.8e-13 50.7 0.0 8.3e-07 29.8 0.0 3.0 2 0 0 2 2 2 2 AAA domain TIP49 PF06068.8 gi|557693520|ref|YP_008796574.1| - 6.2e-12 44.9 0.0 9.7e-05 21.2 0.0 2.7 2 0 0 2 2 2 2 TIP49 C-terminus AAA_5 PF07728.9 gi|557693520|ref|YP_008796574.1| - 5.9e-11 42.2 0.2 0.00019 21.1 0.0 3.7 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA_14 PF13173.1 gi|557693520|ref|YP_008796574.1| - 1.8e-10 40.8 0.0 7e-05 22.7 0.0 2.4 2 0 0 2 2 2 2 AAA domain AAA_33 PF13671.1 gi|557693520|ref|YP_008796574.1| - 3.5e-10 39.9 0.0 0.00024 20.9 0.0 2.6 2 0 0 2 2 2 2 AAA domain Zeta_toxin PF06414.7 gi|557693520|ref|YP_008796574.1| - 4.2e-10 39.0 0.0 6.5e-05 22.1 0.0 2.4 2 0 0 2 2 2 2 Zeta toxin IstB_IS21 PF01695.12 gi|557693520|ref|YP_008796574.1| - 4.4e-09 36.0 0.2 0.0031 16.9 0.0 2.4 2 0 0 2 2 2 2 IstB-like ATP binding protein AAA_19 PF13245.1 gi|557693520|ref|YP_008796574.1| - 1.3e-08 34.5 3.5 0.0021 17.7 0.1 3.2 3 0 0 3 3 2 2 Part of AAA domain AAA_18 PF13238.1 gi|557693520|ref|YP_008796574.1| - 5.5e-08 33.1 0.1 0.0047 17.2 0.0 2.8 3 0 0 3 3 2 2 AAA domain AAA_28 PF13521.1 gi|557693520|ref|YP_008796574.1| - 1.2e-07 31.8 0.1 0.01 15.8 0.0 2.6 2 0 0 2 2 2 2 AAA domain RNA_helicase PF00910.17 gi|557693520|ref|YP_008796574.1| - 1.6e-07 31.4 0.0 0.016 15.4 0.0 2.5 2 0 0 2 2 2 2 RNA helicase Mg_chelatase PF01078.16 gi|557693520|ref|YP_008796574.1| - 5.2e-07 29.0 0.1 0.022 13.9 0.0 2.4 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_25 PF13481.1 gi|557693520|ref|YP_008796574.1| - 5.5e-07 29.1 6.1 0.09 12.1 0.2 4.5 2 2 2 4 4 4 2 AAA domain Arch_ATPase PF01637.13 gi|557693520|ref|YP_008796574.1| - 2.9e-06 27.1 0.1 0.088 12.4 0.0 3.7 2 2 1 3 3 3 2 Archaeal ATPase NACHT PF05729.7 gi|557693520|ref|YP_008796574.1| - 4.2e-06 26.5 0.1 0.66 9.6 0.0 3.8 4 0 0 4 4 4 2 NACHT domain Sigma54_activat PF00158.21 gi|557693520|ref|YP_008796574.1| - 6.4e-06 25.7 0.0 0.089 12.2 0.0 2.7 2 1 0 2 2 2 2 Sigma-54 interaction domain Parvo_NS1 PF01057.12 gi|557693520|ref|YP_008796574.1| - 7.1e-06 25.0 0.1 0.032 13.1 0.0 2.2 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 ABC_tran PF00005.22 gi|557693520|ref|YP_008796574.1| - 1e-05 25.8 0.0 0.094 13.0 0.0 2.5 2 0 0 2 2 2 2 ABC transporter AAA_24 PF13479.1 gi|557693520|ref|YP_008796574.1| - 1.1e-05 25.1 1.4 0.068 12.7 0.1 2.4 2 0 0 2 2 2 2 AAA domain DUF815 PF05673.8 gi|557693520|ref|YP_008796574.1| - 1.3e-05 24.2 0.0 0.042 12.7 0.0 2.5 2 0 0 2 2 2 2 Protein of unknown function (DUF815) KaiC PF06745.8 gi|557693520|ref|YP_008796574.1| - 1.9e-05 23.9 0.3 0.081 12.0 0.0 3.3 3 1 1 4 4 3 2 KaiC DUF2075 PF09848.4 gi|557693520|ref|YP_008796574.1| - 2.2e-05 23.5 0.0 0.077 11.9 0.0 2.2 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) PhoH PF02562.11 gi|557693520|ref|YP_008796574.1| - 2.6e-05 23.5 0.2 0.16 11.1 0.0 2.5 2 0 0 2 2 2 2 PhoH-like protein Sigma54_activ_2 PF14532.1 gi|557693520|ref|YP_008796574.1| - 4e-05 23.6 0.0 0.32 11.0 0.0 2.5 2 0 0 2 2 2 2 Sigma-54 interaction domain NB-ARC PF00931.17 gi|557693520|ref|YP_008796574.1| - 7.9e-05 21.6 0.0 0.15 10.8 0.0 2.4 2 0 0 2 2 2 2 NB-ARC domain AAA_3 PF07726.6 gi|557693520|ref|YP_008796574.1| - 0.0001 21.9 0.0 0.53 9.8 0.0 2.6 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) NTPase_1 PF03266.10 gi|557693520|ref|YP_008796574.1| - 0.0003 20.5 1.8 1.7 8.2 0.0 4.0 3 1 1 4 4 4 2 NTPase SKI PF01202.17 gi|557693520|ref|YP_008796574.1| - 0.00033 20.5 0.0 0.56 10.0 0.0 2.5 2 0 0 2 2 2 2 Shikimate kinase AAA_11 PF13086.1 gi|557693520|ref|YP_008796574.1| - 0.00052 19.6 0.0 0.68 9.4 0.0 2.3 2 0 0 2 2 2 2 AAA domain AAA_30 PF13604.1 gi|557693520|ref|YP_008796574.1| - 0.0011 18.6 0.1 1.8 8.1 0.0 2.8 3 0 0 3 3 2 1 AAA domain Cytidylate_kin2 PF13189.1 gi|557693520|ref|YP_008796574.1| - 0.0017 18.2 0.0 0.11 12.3 0.0 2.4 2 0 0 2 2 2 1 Cytidylate kinase-like family UPF0079 PF02367.12 gi|557693520|ref|YP_008796574.1| - 0.0018 17.8 0.0 1.4 8.6 0.0 2.5 2 0 0 2 2 2 1 Uncharacterised P-loop hydrolase UPF0079 AFG1_ATPase PF03969.11 gi|557693520|ref|YP_008796574.1| - 0.0024 16.7 0.0 4.9 5.8 0.0 3.3 3 0 0 3 3 3 0 AFG1-like ATPase ResIII PF04851.10 gi|557693520|ref|YP_008796574.1| - 0.0028 17.4 0.0 1.6 8.5 0.0 2.4 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit IPT PF01745.11 gi|557693520|ref|YP_008796574.1| - 0.004 16.3 0.1 0.75 8.9 0.0 2.5 2 0 0 2 2 2 1 Isopentenyl transferase Vps4_C PF09336.5 gi|557693520|ref|YP_008796574.1| - 0.004 16.9 0.0 5 7.1 0.0 2.7 2 0 0 2 2 2 0 Vps4 C terminal oligomerisation domain ATP-synt_ab PF00006.20 gi|557693520|ref|YP_008796574.1| - 0.0045 16.5 0.0 1.6 8.1 0.0 2.4 2 0 0 2 2 2 1 ATP synthase alpha/beta family, nucleotide-binding domain Bac_DnaA PF00308.13 gi|557693520|ref|YP_008796574.1| - 0.0066 16.1 0.0 4.8 6.7 0.0 2.7 2 1 0 2 2 2 0 Bacterial dnaA protein Guanylate_kin PF00625.16 gi|557693520|ref|YP_008796574.1| - 0.0085 15.5 0.8 9.5 5.6 0.0 4.0 3 2 2 5 5 3 0 Guanylate kinase KAP_NTPase PF07693.9 gi|557693520|ref|YP_008796574.1| - 0.019 14.0 0.1 7.6 5.4 0.0 3.4 2 2 1 3 3 3 0 KAP family P-loop domain AAA_23 PF13476.1 gi|557693520|ref|YP_008796574.1| - 0.022 15.0 0.1 3.4 7.9 0.0 2.7 2 0 0 2 2 2 0 AAA domain T2SE PF00437.15 gi|557693520|ref|YP_008796574.1| - 0.025 13.4 0.0 5.1 5.9 0.0 2.5 2 0 0 2 2 2 0 Type II/IV secretion system protein KTI12 PF08433.5 gi|557693520|ref|YP_008796574.1| - 0.031 13.4 0.0 4.5 6.4 0.0 2.5 2 0 0 2 2 2 0 Chromatin associated protein KTI12 DAP3 PF10236.4 gi|557693520|ref|YP_008796574.1| - 0.072 12.0 0.0 6.2 5.6 0.0 2.3 2 0 0 2 2 2 0 Mitochondrial ribosomal death-associated protein 3 AAA_21 PF13304.1 gi|557693520|ref|YP_008796574.1| - 0.12 12.2 1.5 13 5.6 0.1 3.1 2 1 0 3 3 3 0 AAA domain Viral_helicase1 PF01443.13 gi|557693520|ref|YP_008796574.1| - 0.24 10.9 0.0 9.1 5.7 0.0 2.2 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase Snf7 PF03357.16 gi|557693521|ref|YP_008796575.1| - 5.4e-09 35.6 2.8 6.6e-09 35.3 1.9 1.3 1 1 0 1 1 1 1 Snf7 LOH1CR12 PF10158.4 gi|557693521|ref|YP_008796575.1| - 0.0052 16.5 3.3 0.013 15.2 1.1 2.1 1 1 1 2 2 2 1 Tumour suppressor protein Peptidase_S49_N PF08496.5 gi|557693521|ref|YP_008796575.1| - 0.024 14.4 0.7 0.061 13.1 0.4 1.9 1 1 0 1 1 1 0 Peptidase family S49 N-terminal Ax_dynein_light PF10211.4 gi|557693521|ref|YP_008796575.1| - 0.31 10.8 7.8 0.034 14.0 2.4 1.5 2 0 0 2 2 2 0 Axonemal dynein light chain DUF972 PF06156.8 gi|557693521|ref|YP_008796575.1| - 0.76 10.1 4.2 1.2 9.4 1.6 2.1 1 1 0 2 2 2 0 Protein of unknown function (DUF972) DivIVA PF05103.8 gi|557693521|ref|YP_008796575.1| - 0.97 9.4 7.9 2.2 8.3 2.7 2.7 1 1 1 2 2 2 0 DivIVA protein Peripla_BP_2 PF01497.13 gi|557693522|ref|YP_008796576.1| - 2.9e-27 95.3 0.0 3.9e-27 94.9 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding protein BacA PF02673.13 gi|557693523|ref|YP_008796577.1| - 1.5e-44 152.1 15.2 1.8e-44 151.8 10.5 1.0 1 0 0 1 1 1 1 Bacitracin resistance protein BacA KH_1 PF00013.24 gi|557693524|ref|YP_008796578.1| - 1e-16 60.2 5.7 2.9e-09 36.4 0.2 2.5 2 1 0 2 2 2 2 KH domain KH_3 PF13014.1 gi|557693524|ref|YP_008796578.1| - 2.3e-08 33.4 1.4 0.0016 18.0 0.1 2.4 2 0 0 2 2 2 2 KH domain KH_2 PF07650.12 gi|557693524|ref|YP_008796578.1| - 0.00097 18.6 1.0 0.11 12.0 0.0 2.3 2 0 0 2 2 2 2 KH domain BON PF04972.12 gi|557693524|ref|YP_008796578.1| - 0.023 14.4 4.2 0.18 11.5 0.4 2.5 2 0 0 2 2 2 0 BON domain KH_4 PF13083.1 gi|557693524|ref|YP_008796578.1| - 0.29 10.7 2.4 7.3 6.3 0.1 2.7 2 2 0 2 2 2 0 KH domain RIO1 PF01163.17 gi|557693525|ref|YP_008796579.1| - 2.1e-54 183.7 0.0 3.2e-54 183.1 0.0 1.2 1 0 0 1 1 1 1 RIO1 family APH PF01636.18 gi|557693525|ref|YP_008796579.1| - 1e-09 38.4 2.2 3.4e-07 30.2 0.0 2.9 2 1 1 3 3 3 2 Phosphotransferase enzyme family Pkinase PF00069.20 gi|557693525|ref|YP_008796579.1| - 1.3e-06 27.8 0.0 2.1e-06 27.0 0.0 1.3 1 0 0 1 1 1 1 Protein kinase domain Kdo PF06293.9 gi|557693525|ref|YP_008796579.1| - 7.8e-05 21.8 0.0 0.0015 17.5 0.0 2.2 1 1 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family Pkinase_Tyr PF07714.12 gi|557693525|ref|YP_008796579.1| - 0.054 12.5 0.0 0.091 11.8 0.0 1.5 1 1 0 1 1 1 0 Protein tyrosine kinase Acylphosphatase PF00708.13 gi|557693526|ref|YP_008796580.1| - 6.3e-18 64.6 0.2 1.1e-17 63.8 0.2 1.4 1 0 0 1 1 1 1 Acylphosphatase Halo_GVPC PF05465.8 gi|557693526|ref|YP_008796580.1| - 0.00012 21.8 2.4 0.00033 20.4 1.7 1.8 1 0 0 1 1 1 1 Halobacterial gas vesicle protein C (GVPC) repeat Apolipoprotein PF01442.13 gi|557693526|ref|YP_008796580.1| - 0.0098 15.4 1.1 0.024 14.1 0.8 1.5 1 1 0 1 1 1 1 Apolipoprotein A1/A4/E domain DUF4085 PF13315.1 gi|557693526|ref|YP_008796580.1| - 0.042 13.2 0.6 0.16 11.3 0.5 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF4085) IncA PF04156.9 gi|557693526|ref|YP_008796580.1| - 0.046 13.3 1.3 0.08 12.5 0.9 1.4 1 0 0 1 1 1 0 IncA protein TPR_MLP1_2 PF07926.7 gi|557693526|ref|YP_008796580.1| - 0.056 13.1 0.2 0.072 12.8 0.2 1.1 1 0 0 1 1 1 0 TPR/MLP1/MLP2-like protein Type_III_YscX PF09474.5 gi|557693526|ref|YP_008796580.1| - 0.067 13.2 0.1 0.11 12.5 0.1 1.3 1 0 0 1 1 1 0 Type III secretion system YscX (type_III_YscX) TBPIP PF07106.8 gi|557693526|ref|YP_008796580.1| - 0.076 12.5 1.1 0.79 9.2 0.9 1.6 1 1 1 2 2 2 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) DUF342 PF03961.8 gi|557693526|ref|YP_008796580.1| - 0.12 10.7 0.4 0.16 10.3 0.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF342) Sds3 PF08598.6 gi|557693526|ref|YP_008796580.1| - 0.12 11.8 4.9 0.17 11.3 3.4 1.2 1 0 0 1 1 1 0 Sds3-like SCO1-SenC PF02630.9 gi|557693528|ref|YP_008796582.1| - 4.7e-38 130.5 0.0 5.7e-38 130.2 0.0 1.1 1 0 0 1 1 1 1 SCO1/SenC AhpC-TSA PF00578.16 gi|557693528|ref|YP_008796582.1| - 7.3e-12 45.0 0.0 1.1e-11 44.4 0.0 1.2 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.5 gi|557693528|ref|YP_008796582.1| - 5.8e-08 32.3 0.0 7.2e-08 32.0 0.0 1.2 1 0 0 1 1 1 1 Redoxin Thioredoxin_8 PF13905.1 gi|557693528|ref|YP_008796582.1| - 6.6e-06 26.1 0.0 1e-05 25.5 0.0 1.4 1 0 0 1 1 1 1 Thioredoxin-like DUF3485 PF11984.3 gi|557693528|ref|YP_008796582.1| - 0.019 14.0 0.0 1.4 7.9 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3485) Ribonuc_red_lgC PF02867.10 gi|557693529|ref|YP_008796583.1| - 3e-159 531.0 0.0 6.7e-159 529.8 0.0 1.6 1 1 0 1 1 1 1 Ribonucleotide reductase, barrel domain Ribonuc_red_lgN PF00317.16 gi|557693529|ref|YP_008796583.1| - 2.5e-23 81.6 0.1 8.9e-23 79.9 0.1 2.0 1 1 0 1 1 1 1 Ribonucleotide reductase, all-alpha domain ATP-cone PF03477.11 gi|557693529|ref|YP_008796583.1| - 1.7e-18 66.8 1.3 5.4e-18 65.2 0.9 2.0 1 0 0 1 1 1 1 ATP cone domain B12-binding_2 PF02607.12 gi|557693529|ref|YP_008796583.1| - 0.017 15.1 0.4 0.083 12.9 0.2 2.2 1 1 1 2 2 2 0 B12 binding domain DUF2336 PF10098.4 gi|557693529|ref|YP_008796583.1| - 0.039 13.1 2.5 0.067 12.4 1.8 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2336) OsmC PF02566.14 gi|557693530|ref|YP_008796584.1| - 4.4e-19 68.5 0.4 5.8e-19 68.1 0.2 1.1 1 0 0 1 1 1 1 OsmC-like protein MORN PF02493.15 gi|557693530|ref|YP_008796584.1| - 0.046 13.4 0.2 0.092 12.5 0.2 1.4 1 0 0 1 1 1 0 MORN repeat DUF192 PF02643.10 gi|557693531|ref|YP_008796585.1| - 2.9e-37 126.6 0.0 8.6e-37 125.1 0.0 1.6 2 0 0 2 2 2 1 Uncharacterized ACR, COG1430 Keratin_assoc PF09775.4 gi|557693531|ref|YP_008796585.1| - 0.082 12.4 0.3 0.12 11.9 0.2 1.2 1 0 0 1 1 1 0 Keratinocyte-associated protein 2 UPF0051 PF01458.12 gi|557693532|ref|YP_008796586.1| - 6.6e-72 241.6 0.1 8.6e-72 241.3 0.1 1.1 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) Ald_Xan_dh_C2 PF02738.13 gi|557693533|ref|YP_008796587.1| - 1.3e-127 426.4 0.0 3.6e-127 424.9 0.0 1.6 2 0 0 2 2 2 1 Molybdopterin-binding domain of aldehyde dehydrogenase Ald_Xan_dh_C PF01315.17 gi|557693533|ref|YP_008796587.1| - 1.3e-27 96.0 0.1 3.2e-27 94.7 0.1 1.7 1 0 0 1 1 1 1 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain Sigma70_r3 PF04539.11 gi|557693533|ref|YP_008796587.1| - 0.08 12.8 0.4 6.2 6.7 0.0 3.7 4 0 0 4 4 4 0 Sigma-70 region 3 Aminotran_5 PF00266.14 gi|557693534|ref|YP_008796588.1| - 1.5e-43 149.0 0.0 1.9e-43 148.6 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-V Aminotran_1_2 PF00155.16 gi|557693534|ref|YP_008796588.1| - 3e-07 29.7 0.0 4.8e-07 29.0 0.0 1.5 1 1 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.16 gi|557693534|ref|YP_008796588.1| - 0.0011 18.2 0.0 0.0012 18.0 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase Cys_Met_Meta_PP PF01053.15 gi|557693534|ref|YP_008796588.1| - 0.0014 16.9 0.0 0.0023 16.2 0.0 1.3 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme DegT_DnrJ_EryC1 PF01041.12 gi|557693534|ref|YP_008796588.1| - 0.024 13.6 0.4 0.048 12.6 0.3 1.4 1 1 0 1 1 1 0 DegT/DnrJ/EryC1/StrS aminotransferase family SHMT PF00464.14 gi|557693534|ref|YP_008796588.1| - 0.051 11.9 0.0 1.1 7.5 0.0 2.1 2 0 0 2 2 2 0 Serine hydroxymethyltransferase MaoC_dehydratas PF01575.14 gi|557693535|ref|YP_008796589.1| - 2.7e-17 62.3 0.0 3.4e-17 61.9 0.0 1.1 1 0 0 1 1 1 1 MaoC like domain MaoC_dehydrat_N PF13452.1 gi|557693535|ref|YP_008796589.1| - 1.8e-08 34.2 0.0 2.3e-08 33.9 0.0 1.1 1 0 0 1 1 1 1 N-terminal half of MaoC dehydratase 4HBT PF03061.17 gi|557693535|ref|YP_008796589.1| - 0.0026 17.8 0.0 0.0048 16.9 0.0 1.4 1 0 0 1 1 1 1 Thioesterase superfamily tRNA_SAD PF07973.9 gi|557693536|ref|YP_008796590.1| - 3.2e-09 36.5 0.2 6.1e-09 35.6 0.1 1.5 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain tRNA-synt_2c PF01411.14 gi|557693536|ref|YP_008796590.1| - 1.1e-07 30.5 0.0 1.6e-07 30.0 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (A) MMR_HSR1_C PF08438.5 gi|557693537|ref|YP_008796591.1| - 2e-33 114.8 0.1 5.1e-33 113.5 0.0 1.7 2 0 0 2 2 2 1 GTPase of unknown function C-terminal MMR_HSR1 PF01926.18 gi|557693537|ref|YP_008796591.1| - 1.2e-18 67.1 0.0 4.2e-18 65.3 0.0 2.0 1 1 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.13 gi|557693537|ref|YP_008796591.1| - 1.7e-08 33.9 1.1 9.2e-05 21.7 0.1 3.5 2 1 0 2 2 2 1 Ferrous iron transport protein B TGS PF02824.16 gi|557693537|ref|YP_008796591.1| - 8.5e-08 31.9 0.0 1.7e-07 30.9 0.0 1.4 1 0 0 1 1 1 1 TGS domain Dynamin_N PF00350.18 gi|557693537|ref|YP_008796591.1| - 0.00042 20.1 0.0 0.12 12.1 0.0 2.4 2 0 0 2 2 2 2 Dynamin family GTP_EFTU PF00009.22 gi|557693537|ref|YP_008796591.1| - 0.00075 18.9 0.5 1.1 8.6 0.2 2.9 2 1 0 2 2 2 2 Elongation factor Tu GTP binding domain Miro PF08477.8 gi|557693537|ref|YP_008796591.1| - 0.073 13.5 0.0 0.29 11.6 0.0 2.1 2 1 0 2 2 2 0 Miro-like protein SRPRB PF09439.5 gi|557693537|ref|YP_008796591.1| - 0.11 11.6 0.0 1.2 8.3 0.0 2.4 1 1 0 1 1 1 0 Signal recognition particle receptor beta subunit Arf PF00025.16 gi|557693537|ref|YP_008796591.1| - 0.12 11.6 0.5 7.4 5.7 0.0 2.9 3 0 0 3 3 3 0 ADP-ribosylation factor family LexA_DNA_bind PF01726.11 gi|557693537|ref|YP_008796591.1| - 0.14 11.7 0.0 7 6.2 0.0 2.8 2 0 0 2 2 2 0 LexA DNA binding domain Carb_kinase PF01256.12 gi|557693538|ref|YP_008796592.1| - 2.9e-45 154.4 0.6 3.3e-45 154.2 0.4 1.0 1 0 0 1 1 1 1 Carbohydrate kinase HK PF02110.10 gi|557693538|ref|YP_008796592.1| - 3.4e-09 36.2 0.1 5e-09 35.6 0.1 1.2 1 0 0 1 1 1 1 Hydroxyethylthiazole kinase family Phos_pyr_kin PF08543.7 gi|557693538|ref|YP_008796592.1| - 8.4e-05 21.8 0.0 0.00015 21.1 0.0 1.5 1 1 0 1 1 1 1 Phosphomethylpyrimidine kinase Alba PF01918.16 gi|557693540|ref|YP_008796594.1| - 3e-12 45.9 1.0 4.2e-12 45.4 0.7 1.2 1 0 0 1 1 1 1 Alba Rpp20 PF12328.3 gi|557693540|ref|YP_008796594.1| - 0.014 15.0 2.5 0.03 13.9 0.6 2.0 1 1 1 2 2 2 0 Rpp20 subunit of nuclear RNase MRP and P Ras PF00071.17 gi|557693541|ref|YP_008796595.1| - 4.8e-16 58.5 0.0 4e-13 49.0 0.0 2.0 2 0 0 2 2 2 2 Ras family Miro PF08477.8 gi|557693541|ref|YP_008796595.1| - 9.5e-11 42.2 0.0 1.3e-10 41.7 0.0 1.2 1 0 0 1 1 1 1 Miro-like protein MMR_HSR1 PF01926.18 gi|557693541|ref|YP_008796595.1| - 2.2e-05 24.3 0.2 0.00018 21.4 0.1 2.1 1 1 0 1 1 1 1 50S ribosome-binding GTPase GTP_EFTU PF00009.22 gi|557693541|ref|YP_008796595.1| - 0.00013 21.4 0.0 0.28 10.5 0.0 2.1 2 0 0 2 2 2 2 Elongation factor Tu GTP binding domain FeoB_N PF02421.13 gi|557693541|ref|YP_008796595.1| - 0.0018 17.6 0.0 0.14 11.3 0.0 2.1 1 1 1 2 2 2 2 Ferrous iron transport protein B MobB PF03205.9 gi|557693541|ref|YP_008796595.1| - 0.0046 16.6 0.1 0.0083 15.8 0.1 1.5 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B Ser_hydrolase PF06821.8 gi|557693541|ref|YP_008796595.1| - 0.054 13.1 0.0 0.089 12.3 0.0 1.3 1 0 0 1 1 1 0 Serine hydrolase Tombus_movement PF05318.7 gi|557693541|ref|YP_008796595.1| - 0.16 12.6 0.5 0.48 11.0 0.0 1.9 2 0 0 2 2 2 0 Tombusvirus movement protein DZR PF12773.2 gi|557693542|ref|YP_008796596.1| - 2.6e-06 27.1 7.8 0.0095 15.7 1.6 2.4 2 0 0 2 2 2 2 Double zinc ribbon HypA PF01155.14 gi|557693542|ref|YP_008796596.1| - 0.0059 16.2 9.6 0.32 10.6 2.2 3.0 1 1 1 2 2 2 1 Hydrogenase expression/synthesis hypA family Zn_Tnp_IS1595 PF12760.2 gi|557693542|ref|YP_008796596.1| - 0.037 13.8 1.2 0.037 13.8 0.8 4.3 2 2 1 4 4 4 0 Transposase zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|557693542|ref|YP_008796596.1| - 0.78 9.3 14.2 1.7 8.1 0.8 3.9 3 1 0 3 3 3 0 zinc-ribbon domain zf-FPG_IleRS PF06827.9 gi|557693542|ref|YP_008796596.1| - 1.1 8.9 13.8 5.5 6.7 1.4 3.5 3 0 0 3 3 3 0 Zinc finger found in FPG and IleRS zf-C2HC5 PF06221.8 gi|557693542|ref|YP_008796596.1| - 1.4 8.6 13.9 2.2 8.0 0.6 3.3 1 1 2 3 3 3 0 Putative zinc finger motif, C2HC5-type A2L_zn_ribbon PF08792.5 gi|557693542|ref|YP_008796596.1| - 1.7 8.1 0.0 1.7 8.1 0.0 3.5 5 0 0 5 5 5 0 A2L zinc ribbon domain TF_Zn_Ribbon PF08271.7 gi|557693542|ref|YP_008796596.1| - 3.2 7.1 13.4 12 5.3 0.0 4.7 4 1 0 4 4 4 0 TFIIB zinc-binding UPF0547 PF10571.4 gi|557693542|ref|YP_008796596.1| - 3.2 7.5 0.0 3.2 7.5 0.0 4.4 4 1 0 4 4 3 0 Uncharacterised protein family UPF0547 DUF35_N PF12172.3 gi|557693542|ref|YP_008796596.1| - 5.2 7.1 10.7 0.37 10.7 0.5 2.7 2 1 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zinc-ribbons_6 PF07191.7 gi|557693542|ref|YP_008796596.1| - 9.5 6.0 8.7 2.9 7.7 1.3 2.9 1 1 2 3 3 3 0 zinc-ribbons DNA_RNApol_7kD PF03604.8 gi|557693542|ref|YP_008796596.1| - 9.9 5.7 9.4 3.8 7.0 1.6 3.2 3 0 0 3 3 3 0 DNA directed RNA polymerase, 7 kDa subunit Ion_trans_2 PF07885.11 gi|557693544|ref|YP_008796598.1| - 1.8e-16 59.6 7.5 1.8e-16 59.6 5.2 2.1 2 0 0 2 2 2 1 Ion channel Ion_trans PF00520.26 gi|557693544|ref|YP_008796598.1| - 1.6e-13 50.4 6.5 2.6e-13 49.6 4.5 1.4 1 0 0 1 1 1 1 Ion transport protein Lig_chan PF00060.21 gi|557693544|ref|YP_008796598.1| - 3e-05 23.7 1.0 0.00047 19.8 0.0 2.2 2 0 0 2 2 2 1 Ligand-gated ion channel VIT1 PF01988.14 gi|557693544|ref|YP_008796598.1| - 0.012 15.0 0.6 0.012 15.0 0.4 2.3 2 1 1 3 3 3 0 VIT family DUF1576 PF07613.6 gi|557693544|ref|YP_008796598.1| - 0.041 13.4 0.3 0.041 13.4 0.2 2.3 2 1 1 3 3 3 0 Protein of unknown function (DUF1576) IRK PF01007.15 gi|557693544|ref|YP_008796598.1| - 0.077 11.7 0.2 0.16 10.7 0.0 1.5 2 0 0 2 2 2 0 Inward rectifier potassium channel MFS_1 PF07690.11 gi|557693545|ref|YP_008796599.1| - 1.8e-21 76.2 47.4 8.8e-16 57.5 6.2 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.2 gi|557693545|ref|YP_008796599.1| - 0.00018 21.2 0.3 0.0027 17.4 0.0 2.6 2 0 0 2 2 2 1 MFS_1 like family PALP PF00291.20 gi|557693546|ref|YP_008796600.1| - 4.3e-63 213.3 2.6 4.9e-63 213.2 1.8 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme ADH_zinc_N PF00107.21 gi|557693546|ref|YP_008796600.1| - 0.065 12.7 0.4 1.2 8.6 0.0 2.5 3 0 0 3 3 3 0 Zinc-binding dehydrogenase eIF-1a PF01176.14 gi|557693547|ref|YP_008796601.1| - 1.8e-21 75.3 0.2 2.2e-21 75.0 0.1 1.1 1 0 0 1 1 1 1 Translation initiation factor 1A / IF-1 GTP_EFTU PF00009.22 gi|557693548|ref|YP_008796602.1| - 7.4e-30 103.7 0.0 1.1e-29 103.2 0.0 1.2 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D3 PF03143.12 gi|557693548|ref|YP_008796602.1| - 4.6e-18 65.2 0.0 1.1e-17 64.0 0.0 1.7 1 0 0 1 1 1 1 Elongation factor Tu C-terminal domain GTP_EFTU_D2 PF03144.20 gi|557693548|ref|YP_008796602.1| - 3.9e-08 33.3 0.3 1.4e-07 31.5 0.2 2.0 1 0 0 1 1 1 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.18 gi|557693548|ref|YP_008796602.1| - 0.0025 17.7 0.0 0.0068 16.3 0.0 1.7 1 1 0 1 1 1 1 50S ribosome-binding GTPase ATP_bind_1 PF03029.12 gi|557693548|ref|YP_008796602.1| - 0.078 12.4 0.0 0.37 10.3 0.0 1.9 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein AsnC_trans_reg PF01037.16 gi|557693549|ref|YP_008796603.1| - 1.8e-13 49.9 0.5 2e-13 49.8 0.4 1.0 1 0 0 1 1 1 1 AsnC family DUF3848 PF12959.2 gi|557693549|ref|YP_008796603.1| - 0.034 14.0 0.1 0.039 13.9 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3848) ACT_4 PF13291.1 gi|557693549|ref|YP_008796603.1| - 0.13 12.5 4.4 5.9 7.3 0.1 2.1 2 0 0 2 2 2 0 ACT domain AsnC_trans_reg PF01037.16 gi|557693550|ref|YP_008796604.1| - 5.2e-11 42.0 0.0 7e-11 41.6 0.0 1.2 1 0 0 1 1 1 1 AsnC family zf-ribbon_3 PF13248.1 gi|557693550|ref|YP_008796604.1| - 2.1e-06 26.7 1.8 3.3e-06 26.1 1.3 1.3 1 0 0 1 1 1 1 zinc-ribbon domain UPF0547 PF10571.4 gi|557693550|ref|YP_008796604.1| - 6.3e-05 22.5 1.4 0.00012 21.7 0.9 1.5 1 0 0 1 1 1 1 Uncharacterised protein family UPF0547 zinc_ribbon_2 PF13240.1 gi|557693550|ref|YP_008796604.1| - 7.3e-05 22.1 0.6 0.00011 21.5 0.4 1.3 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.2 gi|557693550|ref|YP_008796604.1| - 0.012 15.3 0.3 0.018 14.8 0.2 1.3 1 0 0 1 1 1 0 Double zinc ribbon zf-H2C2_2 PF13465.1 gi|557693550|ref|YP_008796604.1| - 0.04 14.2 1.5 3.6 8.0 0.1 2.4 2 0 0 2 2 2 0 Zinc-finger double domain DUF2296 PF10058.4 gi|557693550|ref|YP_008796604.1| - 0.04 13.6 0.9 0.34 10.7 0.1 2.4 2 1 0 2 2 2 0 Predicted integral membrane metal-binding protein (DUF2296) RecR PF02132.10 gi|557693550|ref|YP_008796604.1| - 0.086 12.2 2.3 0.11 11.9 1.0 1.5 2 0 0 2 2 2 0 RecR protein DUF4471 PF14740.1 gi|557693550|ref|YP_008796604.1| - 0.088 12.0 0.0 0.1 11.8 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4471) Mu-like_Com PF10122.4 gi|557693550|ref|YP_008796604.1| - 0.091 11.8 0.1 0.17 10.9 0.1 1.5 1 0 0 1 1 1 0 Mu-like prophage protein Com zf-RanBP PF00641.13 gi|557693550|ref|YP_008796604.1| - 0.11 11.5 1.4 0.18 10.9 0.9 1.3 1 0 0 1 1 1 0 Zn-finger in Ran binding protein and others Rubredoxin PF00301.15 gi|557693550|ref|YP_008796604.1| - 0.14 12.0 0.6 11 5.9 0.0 2.4 2 0 0 2 2 2 0 Rubredoxin Elf1 PF05129.8 gi|557693550|ref|YP_008796604.1| - 0.27 10.9 1.8 1.3 8.7 1.2 2.0 1 1 0 1 1 1 0 Transcription elongation factor Elf1 like AsnC_trans_reg PF01037.16 gi|557693551|ref|YP_008796605.1| - 9.4e-14 50.8 0.3 1e-13 50.7 0.2 1.0 1 0 0 1 1 1 1 AsnC family ACT_4 PF13291.1 gi|557693551|ref|YP_008796605.1| - 0.0091 16.3 0.1 0.011 16.1 0.0 1.2 1 0 0 1 1 1 1 ACT domain GYD PF08734.6 gi|557693551|ref|YP_008796605.1| - 0.1 12.3 0.0 0.12 12.0 0.0 1.2 1 0 0 1 1 1 0 GYD domain Gln-synt_C PF00120.19 gi|557693552|ref|YP_008796606.1| - 2.4e-94 315.3 0.0 3e-94 314.9 0.0 1.1 1 0 0 1 1 1 1 Glutamine synthetase, catalytic domain Gln-synt_N PF03951.14 gi|557693552|ref|YP_008796606.1| - 3.6e-28 96.9 0.0 8.1e-28 95.8 0.0 1.6 1 0 0 1 1 1 1 Glutamine synthetase, beta-Grasp domain VKOR PF07884.9 gi|557693553|ref|YP_008796607.1| - 8e-21 74.3 16.9 1.4e-20 73.5 11.7 1.3 1 1 0 1 1 1 1 Vitamin K epoxide reductase family AhpC-TSA PF00578.16 gi|557693554|ref|YP_008796608.1| - 6.4e-15 54.9 0.0 8.5e-15 54.5 0.0 1.2 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.5 gi|557693554|ref|YP_008796608.1| - 8.4e-14 51.3 0.0 1e-13 51.0 0.0 1.2 1 0 0 1 1 1 1 Redoxin Thioredoxin PF00085.15 gi|557693554|ref|YP_008796608.1| - 1.7e-13 50.1 0.0 2.9e-08 33.3 0.0 2.2 1 1 1 2 2 2 2 Thioredoxin Thioredoxin_8 PF13905.1 gi|557693554|ref|YP_008796608.1| - 2.7e-12 46.6 0.0 4e-12 46.0 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin-like Thioredoxin_2 PF13098.1 gi|557693554|ref|YP_008796608.1| - 1.6e-11 44.3 0.0 2.2e-11 43.9 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_7 PF13899.1 gi|557693554|ref|YP_008796608.1| - 0.002 18.1 0.6 0.0098 15.9 0.4 2.0 1 1 0 1 1 1 1 Thioredoxin-like DSBA PF01323.15 gi|557693554|ref|YP_008796608.1| - 0.0046 16.5 0.1 0.014 15.0 0.0 1.7 1 1 1 2 2 2 1 DSBA-like thioredoxin domain Thioredoxin_4 PF13462.1 gi|557693554|ref|YP_008796608.1| - 0.0046 16.9 0.1 1.2 9.0 0.0 2.2 2 0 0 2 2 2 2 Thioredoxin TrbC_Ftype PF09673.5 gi|557693554|ref|YP_008796608.1| - 0.0054 16.3 0.0 0.012 15.1 0.0 1.5 2 0 0 2 2 2 1 Type-F conjugative transfer system pilin assembly protein Thioredoxin_5 PF13743.1 gi|557693554|ref|YP_008796608.1| - 0.006 16.1 0.0 0.8 9.2 0.0 2.2 1 1 1 2 2 2 2 Thioredoxin MFS_1 PF07690.11 gi|557693555|ref|YP_008796609.1| - 2.2e-50 171.3 51.9 2.2e-50 171.3 36.0 1.7 2 0 0 2 2 2 1 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|557693555|ref|YP_008796609.1| - 3.5e-10 39.0 15.0 3.5e-10 39.0 10.4 2.6 2 1 0 2 2 2 1 Sugar (and other) transporter MFS_2 PF13347.1 gi|557693555|ref|YP_008796609.1| - 5e-05 21.8 6.5 5e-05 21.8 4.5 2.5 2 1 0 2 2 2 2 MFS/sugar transport protein CTP_synth_N PF06418.9 gi|557693556|ref|YP_008796610.1| - 1.5e-122 408.0 0.1 1.9e-122 407.7 0.1 1.1 1 0 0 1 1 1 1 CTP synthase N-terminus GATase PF00117.23 gi|557693556|ref|YP_008796610.1| - 1.1e-45 155.5 0.0 2.1e-45 154.5 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|557693556|ref|YP_008796610.1| - 2e-08 33.9 0.0 4.8e-08 32.7 0.0 1.6 2 0 0 2 2 2 1 Peptidase C26 CbiA PF01656.18 gi|557693556|ref|YP_008796610.1| - 7.1e-08 32.0 0.1 1.1e-07 31.4 0.0 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ABC2_membrane_3 PF12698.2 gi|557693557|ref|YP_008796611.1| - 4.8e-30 104.7 23.4 5.6e-30 104.5 16.2 1.0 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.2 gi|557693557|ref|YP_008796611.1| - 1.2e-25 89.8 22.3 1.8e-25 89.3 15.5 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|557693557|ref|YP_008796611.1| - 2.2e-13 49.8 16.7 3e-13 49.4 11.6 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.1 gi|557693557|ref|YP_008796611.1| - 8.2 5.6 30.6 29 3.8 18.3 2.8 2 1 0 2 2 2 0 ABC-2 family transporter protein ABC_tran PF00005.22 gi|557693558|ref|YP_008796612.1| - 4.1e-25 88.6 0.0 5.5e-25 88.2 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|557693558|ref|YP_008796612.1| - 7.7e-13 49.0 0.0 4.7e-06 26.7 0.0 2.1 1 1 1 2 2 2 2 AAA domain AAA_29 PF13555.1 gi|557693558|ref|YP_008796612.1| - 0.00033 20.1 0.1 0.00058 19.3 0.1 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.14 gi|557693558|ref|YP_008796612.1| - 0.00046 19.4 0.1 0.31 10.2 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.1 gi|557693558|ref|YP_008796612.1| - 0.00069 20.0 0.0 0.00083 19.7 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_13 PF13166.1 gi|557693558|ref|YP_008796612.1| - 0.0068 14.9 0.0 0.63 8.4 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_30 PF13604.1 gi|557693558|ref|YP_008796612.1| - 0.012 15.2 0.0 0.019 14.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain 6PGD PF00393.14 gi|557693558|ref|YP_008796612.1| - 0.014 14.6 0.0 0.02 14.0 0.0 1.2 1 0 0 1 1 1 0 6-phosphogluconate dehydrogenase, C-terminal domain AAA_22 PF13401.1 gi|557693558|ref|YP_008796612.1| - 0.026 14.6 0.0 0.042 13.9 0.0 1.4 1 1 0 1 1 1 0 AAA domain AAA_19 PF13245.1 gi|557693558|ref|YP_008796612.1| - 0.035 13.8 0.1 0.1 12.3 0.1 1.8 2 0 0 2 2 2 0 Part of AAA domain AAA PF00004.24 gi|557693558|ref|YP_008796612.1| - 0.04 14.1 0.0 0.069 13.3 0.0 1.4 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_33 PF13671.1 gi|557693558|ref|YP_008796612.1| - 0.041 13.7 0.0 0.14 12.0 0.0 1.9 1 1 0 1 1 1 0 AAA domain UPF0079 PF02367.12 gi|557693558|ref|YP_008796612.1| - 0.05 13.2 0.6 0.1 12.2 0.1 1.7 2 0 0 2 2 2 0 Uncharacterised P-loop hydrolase UPF0079 SRP54 PF00448.17 gi|557693558|ref|YP_008796612.1| - 0.057 12.8 0.1 0.11 11.8 0.0 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_5 PF07728.9 gi|557693558|ref|YP_008796612.1| - 0.058 13.1 0.0 0.13 12.0 0.0 1.6 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_28 PF13521.1 gi|557693558|ref|YP_008796612.1| - 0.13 12.1 0.0 0.21 11.5 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.1 gi|557693558|ref|YP_008796612.1| - 0.14 12.4 0.0 0.24 11.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.1 gi|557693558|ref|YP_008796612.1| - 0.15 11.9 0.0 0.28 11.1 0.0 1.4 1 0 0 1 1 1 0 AAA ATPase domain EamA PF00892.15 gi|557693559|ref|YP_008796613.1| - 4e-19 68.8 19.4 2.7e-09 37.1 8.0 2.3 2 1 0 2 2 2 2 EamA-like transporter family EmrE PF13536.1 gi|557693559|ref|YP_008796613.1| - 0.0042 17.2 10.8 0.023 14.9 3.8 3.5 2 2 2 4 4 4 2 Multidrug resistance efflux transporter UPF0546 PF10639.4 gi|557693559|ref|YP_008796613.1| - 0.03 14.1 4.7 3.4 7.5 0.1 3.4 3 1 1 4 4 4 0 Uncharacterised protein family UPF0546 UPF0197 PF05251.7 gi|557693559|ref|YP_008796613.1| - 0.18 12.1 0.3 0.18 12.1 0.2 3.2 3 1 1 4 4 4 0 Uncharacterised protein family (UPF0197) DUF4131 PF13567.1 gi|557693559|ref|YP_008796613.1| - 2.1 7.7 9.4 17 4.7 4.9 2.7 1 1 1 2 2 2 0 Domain of unknown function (DUF4131) HSDR_N PF04313.9 gi|557693560|ref|YP_008796614.1| - 3.9e-06 26.7 0.0 0.021 14.5 0.0 2.3 1 1 1 2 2 2 2 Type I restriction enzyme R protein N terminus (HSDR_N) HSDR_N_2 PF13588.1 gi|557693560|ref|YP_008796614.1| - 0.079 12.7 0.0 0.13 12.0 0.0 1.4 1 0 0 1 1 1 0 Type I restriction enzyme R protein N terminus (HSDR_N) NifU_N PF01592.11 gi|557693561|ref|YP_008796615.1| - 2.2e-29 101.9 0.0 2.5e-29 101.7 0.0 1.0 1 0 0 1 1 1 1 NifU-like N terminal domain SufE PF02657.10 gi|557693561|ref|YP_008796615.1| - 0.14 11.7 0.0 0.16 11.6 0.0 1.1 1 0 0 1 1 1 0 Fe-S metabolism associated domain HD PF01966.17 gi|557693562|ref|YP_008796616.1| - 2.9e-13 49.9 1.2 2.9e-13 49.9 0.8 2.1 2 1 0 2 2 2 1 HD domain HDOD PF08668.7 gi|557693562|ref|YP_008796616.1| - 0.0051 16.1 0.1 0.0086 15.3 0.0 1.4 1 0 0 1 1 1 1 HDOD domain Uso1_p115_C PF04871.8 gi|557693564|ref|YP_008796618.1| - 0.24 11.3 4.0 0.49 10.3 2.8 1.5 1 0 0 1 1 1 0 Uso1 / p115 like vesicle tethering protein, C terminal region TMPIT PF07851.8 gi|557693564|ref|YP_008796618.1| - 5.3 6.0 8.2 0.12 11.3 1.2 1.4 2 0 0 2 2 2 0 TMPIT-like protein Thymidylate_kin PF02223.12 gi|557693566|ref|YP_008796620.1| - 1.7e-48 164.5 0.1 1.9e-48 164.3 0.0 1.0 1 0 0 1 1 1 1 Thymidylate kinase AAA_28 PF13521.1 gi|557693566|ref|YP_008796620.1| - 4.4e-09 36.5 0.0 5.6e-09 36.1 0.0 1.2 1 0 0 1 1 1 1 AAA domain dNK PF01712.14 gi|557693566|ref|YP_008796620.1| - 2.5e-08 33.9 0.3 1.2e-07 31.7 0.2 1.9 1 1 0 1 1 1 1 Deoxynucleoside kinase AAA_18 PF13238.1 gi|557693566|ref|YP_008796620.1| - 1.5e-07 31.7 0.2 4.8e-07 30.1 0.2 1.7 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|557693566|ref|YP_008796620.1| - 2.6e-07 31.4 0.0 5.3e-07 30.4 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|557693566|ref|YP_008796620.1| - 1e-06 28.6 0.1 1.8e-06 27.8 0.0 1.4 1 1 0 1 1 1 1 AAA domain SKI PF01202.17 gi|557693566|ref|YP_008796620.1| - 1.2e-06 28.4 1.7 0.00016 21.5 1.2 2.3 1 1 0 1 1 1 1 Shikimate kinase AAA_22 PF13401.1 gi|557693566|ref|YP_008796620.1| - 0.0056 16.8 0.1 0.048 13.8 0.0 2.2 2 1 0 2 2 2 1 AAA domain MobB PF03205.9 gi|557693566|ref|YP_008796620.1| - 0.0059 16.3 0.0 0.012 15.3 0.0 1.6 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B APS_kinase PF01583.15 gi|557693566|ref|YP_008796620.1| - 0.0097 15.5 0.1 0.024 14.3 0.0 1.8 2 1 0 2 2 2 1 Adenylylsulphate kinase CBS PF00571.23 gi|557693566|ref|YP_008796620.1| - 0.01 15.6 0.7 0.42 10.4 0.1 3.0 3 0 0 3 3 3 0 CBS domain TIR_2 PF13676.1 gi|557693566|ref|YP_008796620.1| - 0.012 15.8 0.1 0.18 11.9 0.0 2.5 1 1 1 2 2 2 0 TIR domain SRP54 PF00448.17 gi|557693566|ref|YP_008796620.1| - 0.014 14.8 0.0 0.031 13.7 0.0 1.5 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA PF00004.24 gi|557693566|ref|YP_008796620.1| - 0.025 14.7 0.1 0.036 14.2 0.1 1.7 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) CbiA PF01656.18 gi|557693566|ref|YP_008796620.1| - 0.033 13.5 0.3 0.067 12.5 0.2 1.8 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain KTI12 PF08433.5 gi|557693566|ref|YP_008796620.1| - 0.039 13.1 0.4 0.42 9.7 0.3 2.2 1 1 0 1 1 1 0 Chromatin associated protein KTI12 PPK2 PF03976.9 gi|557693566|ref|YP_008796620.1| - 0.059 12.6 0.2 0.47 9.7 0.0 2.0 2 0 0 2 2 2 0 Polyphosphate kinase 2 (PPK2) ArgK PF03308.11 gi|557693566|ref|YP_008796620.1| - 0.065 12.0 0.0 0.1 11.3 0.0 1.4 1 0 0 1 1 1 0 ArgK protein ADK PF00406.17 gi|557693566|ref|YP_008796620.1| - 0.076 12.8 0.8 11 5.8 0.1 2.4 2 1 0 2 2 2 0 Adenylate kinase AAA_30 PF13604.1 gi|557693566|ref|YP_008796620.1| - 0.078 12.5 0.1 0.14 11.7 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|557693566|ref|YP_008796620.1| - 0.098 12.0 0.0 0.12 11.7 0.0 1.4 1 1 0 1 1 1 0 AAA-like domain ILVD_EDD PF00920.16 gi|557693567|ref|YP_008796621.1| - 3.2e-221 735.2 0.4 3.6e-221 735.1 0.2 1.0 1 0 0 1 1 1 1 Dehydratase family MOZART2 PF12926.2 gi|557693567|ref|YP_008796621.1| - 0.14 11.7 0.0 0.37 10.4 0.0 1.7 1 0 0 1 1 1 0 Mitotic-spindle organizing gamma-tubulin ring associated UPF0147 PF03685.8 gi|557693568|ref|YP_008796622.1| - 2.5e-30 104.1 2.0 2.7e-30 104.0 1.4 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0147) FerA PF08165.6 gi|557693568|ref|YP_008796622.1| - 0.083 12.5 1.0 8.3 6.1 0.1 2.2 1 1 1 2 2 2 0 FerA (NUC095) domain TusA PF01206.12 gi|557693568|ref|YP_008796622.1| - 0.099 12.2 0.0 0.18 11.4 0.0 1.5 1 1 0 1 1 1 0 Sulfurtransferase TusA SpoIIIAH PF12685.2 gi|557693568|ref|YP_008796622.1| - 0.16 11.4 1.9 2.2 7.7 0.4 2.0 1 1 1 2 2 2 0 SpoIIIAH-like protein CitMHS PF03600.11 gi|557693569|ref|YP_008796623.1| - 2.3e-33 115.2 50.0 2.4e-28 98.7 17.7 2.2 1 1 1 2 2 2 2 Citrate transporter ArsB PF02040.10 gi|557693569|ref|YP_008796623.1| - 9.6e-10 37.9 34.5 2.3e-09 36.7 23.9 1.6 1 1 0 1 1 1 1 Arsenical pump membrane protein PDT PF00800.13 gi|557693570|ref|YP_008796624.1| - 1.1e-63 214.0 0.1 1.4e-63 213.7 0.0 1.1 1 0 0 1 1 1 1 Prephenate dehydratase ACT PF01842.20 gi|557693570|ref|YP_008796624.1| - 8.4e-10 37.9 0.0 1.6e-09 37.0 0.0 1.5 1 0 0 1 1 1 1 ACT domain NAD_binding_2 PF03446.10 gi|557693571|ref|YP_008796625.1| - 5.5e-56 188.8 0.5 8.7e-56 188.2 0.3 1.3 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_binding_11 PF14833.1 gi|557693571|ref|YP_008796625.1| - 3.4e-31 107.8 0.0 6.2e-31 106.9 0.0 1.4 1 0 0 1 1 1 1 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase F420_oxidored PF03807.12 gi|557693571|ref|YP_008796625.1| - 5.2e-07 30.0 0.0 1.2e-06 28.8 0.0 1.6 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent 2-Hacid_dh_C PF02826.14 gi|557693571|ref|YP_008796625.1| - 1.2e-06 27.8 0.1 2.4e-06 26.8 0.0 1.5 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IlvN PF07991.7 gi|557693571|ref|YP_008796625.1| - 0.00013 21.3 0.0 0.00023 20.5 0.0 1.4 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain Shikimate_DH PF01488.15 gi|557693571|ref|YP_008796625.1| - 0.00027 21.0 0.0 0.00042 20.4 0.0 1.4 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase UDPG_MGDP_dh_N PF03721.9 gi|557693571|ref|YP_008796625.1| - 0.00067 19.0 0.0 1.3 8.3 0.0 2.5 2 0 0 2 2 2 2 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 3HCDH_N PF02737.13 gi|557693571|ref|YP_008796625.1| - 0.011 15.3 0.0 0.023 14.3 0.0 1.6 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Saccharop_dh PF03435.13 gi|557693571|ref|YP_008796625.1| - 0.097 11.6 0.0 0.25 10.2 0.0 1.8 1 1 0 1 1 1 0 Saccharopine dehydrogenase GFO_IDH_MocA PF01408.17 gi|557693571|ref|YP_008796625.1| - 0.13 12.8 0.0 0.23 12.0 0.0 1.4 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold RHH_1 PF01402.16 gi|557693573|ref|YP_008796627.1| - 2.2e-06 27.2 0.1 2.6e-06 27.0 0.0 1.1 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family RHH_2 PF03693.9 gi|557693573|ref|YP_008796627.1| - 0.037 14.2 0.0 0.037 14.2 0.0 1.0 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0156) Cpn60_TCP1 PF00118.19 gi|557693574|ref|YP_008796628.1| - 3.9e-174 579.8 16.0 4.5e-174 579.6 11.1 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family TFIIE_beta PF02186.10 gi|557693574|ref|YP_008796628.1| - 0.17 11.8 0.5 0.66 10.0 0.0 2.2 3 0 0 3 3 3 0 TFIIE beta subunit core domain RNA_pol_Rpb6 PF01192.17 gi|557693575|ref|YP_008796629.1| - 2.3e-15 56.0 0.1 3.8e-15 55.3 0.0 1.3 2 0 0 2 2 2 1 RNA polymerase Rpb6 2TM PF13239.1 gi|557693576|ref|YP_008796630.1| - 0.041 13.9 1.3 0.052 13.6 0.9 1.1 1 0 0 1 1 1 0 2TM domain DUF4199 PF13858.1 gi|557693576|ref|YP_008796630.1| - 0.065 13.1 3.6 0.076 12.9 2.5 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF4199) SPC25 PF06703.6 gi|557693576|ref|YP_008796630.1| - 0.071 12.6 1.1 0.089 12.3 0.7 1.0 1 0 0 1 1 1 0 Microsomal signal peptidase 25 kDa subunit (SPC25) TctB PF07331.6 gi|557693576|ref|YP_008796630.1| - 0.1 12.2 3.9 0.13 11.9 2.7 1.3 1 1 0 1 1 1 0 Tripartite tricarboxylate transporter TctB family DUF763 PF05559.6 gi|557693577|ref|YP_008796631.1| - 5.3e-63 212.9 0.0 6.5e-63 212.6 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF763) NAD_binding_5 PF07994.7 gi|557693578|ref|YP_008796632.1| - 4.6e-52 177.3 0.0 1.2e-51 175.9 0.0 1.6 1 1 0 1 1 1 1 Myo-inositol-1-phosphate synthase Inos-1-P_synth PF01658.12 gi|557693578|ref|YP_008796632.1| - 2.2e-33 114.3 0.0 3.6e-33 113.7 0.0 1.3 1 0 0 1 1 1 1 Myo-inositol-1-phosphate synthase PadR PF03551.9 gi|557693579|ref|YP_008796633.1| - 3.7e-17 61.8 0.3 4.8e-17 61.4 0.2 1.1 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family RTP PF02334.11 gi|557693579|ref|YP_008796633.1| - 0.0052 16.7 0.0 0.0075 16.2 0.0 1.2 1 0 0 1 1 1 1 Replication terminator protein TrmB PF01978.14 gi|557693579|ref|YP_008796633.1| - 0.017 14.8 0.3 0.095 12.4 0.2 2.3 1 1 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Replic_Relax PF13814.1 gi|557693579|ref|YP_008796633.1| - 0.022 14.6 0.1 0.025 14.4 0.0 1.2 1 0 0 1 1 1 0 Replication-relaxation HTH_34 PF13601.1 gi|557693579|ref|YP_008796633.1| - 0.033 14.2 0.0 0.052 13.5 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_45 PF14947.1 gi|557693579|ref|YP_008796633.1| - 0.072 12.9 0.0 0.15 11.8 0.0 1.6 1 1 0 1 1 1 0 Winged helix-turn-helix Mrr_N PF14338.1 gi|557693579|ref|YP_008796633.1| - 0.086 12.9 0.2 0.21 11.7 0.1 1.6 1 1 1 2 2 2 0 Mrr N-terminal domain HTH_27 PF13463.1 gi|557693579|ref|YP_008796633.1| - 0.094 13.0 0.0 0.22 11.8 0.0 1.7 1 1 0 1 1 1 0 Winged helix DNA-binding domain ECH PF00378.15 gi|557693580|ref|YP_008796634.1| - 2e-71 239.9 0.0 3.5e-71 239.1 0.0 1.4 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase family 3HCDH_N PF02737.13 gi|557693580|ref|YP_008796634.1| - 1.3e-68 230.2 4.0 2.3e-68 229.3 2.8 1.5 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 3HCDH PF00725.17 gi|557693580|ref|YP_008796634.1| - 1.3e-48 163.3 0.7 9.1e-27 93.3 0.0 3.8 4 0 0 4 4 4 2 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NAD_Gly3P_dh_N PF01210.18 gi|557693580|ref|YP_008796634.1| - 0.00011 22.0 0.2 0.00025 20.7 0.2 1.7 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ECH_C PF13766.1 gi|557693580|ref|YP_008796634.1| - 0.00012 22.1 0.3 0.00033 20.7 0.0 1.8 2 0 0 2 2 1 1 2-enoyl-CoA Hydratase C-terminal region NAD_binding_2 PF03446.10 gi|557693580|ref|YP_008796634.1| - 0.00045 20.0 1.6 0.0019 18.0 1.1 2.1 1 1 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase AlaDh_PNT_C PF01262.16 gi|557693580|ref|YP_008796634.1| - 0.0008 19.0 0.4 0.0018 17.8 0.3 1.6 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain UDPG_MGDP_dh_N PF03721.9 gi|557693580|ref|YP_008796634.1| - 0.002 17.5 0.2 0.0041 16.5 0.1 1.6 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain XdhC_C PF13478.1 gi|557693580|ref|YP_008796634.1| - 0.0051 17.1 0.1 0.013 15.7 0.1 1.8 1 0 0 1 1 1 1 XdhC Rossmann domain UPF0146 PF03686.8 gi|557693580|ref|YP_008796634.1| - 0.0052 16.6 0.3 0.032 14.0 0.2 2.4 2 0 0 2 2 2 1 Uncharacterised protein family (UPF0146) Pyr_redox PF00070.22 gi|557693580|ref|YP_008796634.1| - 0.014 15.8 1.0 0.045 14.1 0.7 1.9 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase F420_oxidored PF03807.12 gi|557693580|ref|YP_008796634.1| - 0.025 14.9 0.4 0.18 12.2 0.3 2.6 1 1 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent DAO PF01266.19 gi|557693580|ref|YP_008796634.1| - 0.026 13.4 1.9 0.056 12.3 1.3 1.5 1 0 0 1 1 1 0 FAD dependent oxidoreductase Pyr_redox_2 PF07992.9 gi|557693580|ref|YP_008796634.1| - 0.058 13.2 0.1 0.15 11.9 0.0 1.7 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_7 PF13241.1 gi|557693580|ref|YP_008796634.1| - 0.13 12.5 0.6 0.42 10.8 0.4 1.9 1 0 0 1 1 1 0 Putative NAD(P)-binding Aminotran_5 PF00266.14 gi|557693581|ref|YP_008796635.1| - 1.7e-152 507.4 0.1 1.9e-152 507.2 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-V SelA PF03841.8 gi|557693581|ref|YP_008796635.1| - 0.00015 20.6 0.0 0.00024 19.9 0.0 1.3 1 0 0 1 1 1 1 L-seryl-tRNA selenium transferase Beta_elim_lyase PF01212.16 gi|557693581|ref|YP_008796635.1| - 0.00069 18.8 0.0 0.0032 16.6 0.0 1.8 1 1 0 2 2 2 1 Beta-eliminating lyase Cys_Met_Meta_PP PF01053.15 gi|557693581|ref|YP_008796635.1| - 0.0042 15.4 0.0 0.0087 14.3 0.0 1.6 2 0 0 2 2 2 1 Cys/Met metabolism PLP-dependent enzyme DegT_DnrJ_EryC1 PF01041.12 gi|557693581|ref|YP_008796635.1| - 0.022 13.7 0.2 0.051 12.6 0.1 1.6 1 1 0 1 1 1 0 DegT/DnrJ/EryC1/StrS aminotransferase family tRNA-Thr_ED PF08915.6 gi|557693582|ref|YP_008796636.1| - 4.8e-37 127.0 0.0 1e-36 125.9 0.0 1.6 1 0 0 1 1 1 1 Archaea-specific editing domain of threonyl-tRNA synthetase HGTP_anticodon PF03129.15 gi|557693582|ref|YP_008796636.1| - 2.4e-17 62.6 0.2 5.6e-17 61.4 0.1 1.7 1 0 0 1 1 1 1 Anticodon binding domain tRNA-synt_2b PF00587.20 gi|557693582|ref|YP_008796636.1| - 1.3e-14 54.1 0.4 3.3e-14 52.8 0.2 1.7 2 0 0 2 2 2 1 tRNA synthetase class II core domain (G, H, P, S and T) Parvo_coat_N PF08398.5 gi|557693582|ref|YP_008796636.1| - 0.08 12.7 0.0 0.17 11.7 0.0 1.5 1 0 0 1 1 1 0 Parvovirus coat protein VP1 AP_endonuc_2 PF01261.19 gi|557693582|ref|YP_008796636.1| - 0.11 11.7 0.1 0.32 10.2 0.0 1.7 1 0 0 1 1 1 0 Xylose isomerase-like TIM barrel Antitoxin-MazE PF04014.13 gi|557693583|ref|YP_008796637.1| - 0.0011 18.5 0.1 0.0082 15.8 0.1 2.1 1 1 0 1 1 1 1 Antidote-toxin recognition MazE Bromodomain PF00439.20 gi|557693583|ref|YP_008796637.1| - 0.0033 17.3 0.1 0.0047 16.8 0.0 1.3 1 0 0 1 1 1 1 Bromodomain PIN PF01850.16 gi|557693584|ref|YP_008796638.1| - 2.8e-15 56.7 0.5 3.3e-15 56.4 0.4 1.1 1 0 0 1 1 1 1 PIN domain Ferritin PF00210.19 gi|557693585|ref|YP_008796639.1| - 8.4e-25 87.1 0.4 9.4e-25 87.0 0.3 1.0 1 0 0 1 1 1 1 Ferritin-like domain Rubrerythrin PF02915.12 gi|557693585|ref|YP_008796639.1| - 4.3e-07 30.3 0.1 5.5e-07 29.9 0.1 1.2 1 0 0 1 1 1 1 Rubrerythrin Ferritin_2 PF13668.1 gi|557693585|ref|YP_008796639.1| - 0.00036 20.4 1.4 0.15 11.9 0.0 2.4 1 1 1 2 2 2 2 Ferritin-like domain DUF2383 PF09537.5 gi|557693585|ref|YP_008796639.1| - 0.00048 20.3 0.2 0.15 12.3 0.0 2.3 2 0 0 2 2 2 2 Domain of unknown function (DUF2383) S6PP_C PF08472.5 gi|557693585|ref|YP_008796639.1| - 0.027 14.0 0.2 3.6 7.2 0.0 2.1 2 0 0 2 2 2 0 Sucrose-6-phosphate phosphohydrolase C-terminal COQ7 PF03232.8 gi|557693585|ref|YP_008796639.1| - 0.086 12.3 0.1 1.3 8.4 0.0 2.1 2 0 0 2 2 2 0 Ubiquinone biosynthesis protein COQ7 Uso1_p115_C PF04871.8 gi|557693586|ref|YP_008796640.1| - 0.031 14.1 1.2 0.043 13.7 0.9 1.3 1 0 0 1 1 1 0 Uso1 / p115 like vesicle tethering protein, C terminal region DUF4381 PF14316.1 gi|557693587|ref|YP_008796641.1| - 0.032 14.3 1.1 0.037 14.1 0.7 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4381) Peptidase_M9_N PF08453.5 gi|557693587|ref|YP_008796641.1| - 0.035 13.4 0.1 0.04 13.2 0.1 1.1 1 0 0 1 1 1 0 Peptidase family M9 N-terminal MMR_HSR1 PF01926.18 gi|557693588|ref|YP_008796642.1| - 1.4e-17 63.6 0.1 2.9e-17 62.6 0.0 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase GTP-bdg_N PF13167.1 gi|557693588|ref|YP_008796642.1| - 6e-13 48.7 0.0 1.9e-12 47.1 0.0 1.9 2 0 0 2 2 1 1 GTP-binding GTPase N-terminal FeoB_N PF02421.13 gi|557693588|ref|YP_008796642.1| - 2.6e-07 30.0 0.0 6.3e-07 28.8 0.0 1.7 2 0 0 2 2 2 1 Ferrous iron transport protein B GTP_EFTU PF00009.22 gi|557693588|ref|YP_008796642.1| - 7.6e-07 28.7 0.2 4.4e-05 22.9 0.0 2.4 2 0 0 2 2 2 1 Elongation factor Tu GTP binding domain Miro PF08477.8 gi|557693588|ref|YP_008796642.1| - 1.5e-05 25.4 0.3 5.6e-05 23.6 0.0 2.2 3 1 0 3 3 2 1 Miro-like protein Arf PF00025.16 gi|557693588|ref|YP_008796642.1| - 4.6e-05 22.7 1.6 0.00012 21.4 0.1 2.3 2 1 0 2 2 2 1 ADP-ribosylation factor family Ras PF00071.17 gi|557693588|ref|YP_008796642.1| - 0.00016 21.1 0.0 0.00046 19.6 0.0 1.8 1 1 0 1 1 1 1 Ras family SRPRB PF09439.5 gi|557693588|ref|YP_008796642.1| - 0.0096 15.1 0.0 0.019 14.1 0.0 1.4 1 0 0 1 1 1 1 Signal recognition particle receptor beta subunit ABC_tran PF00005.22 gi|557693588|ref|YP_008796642.1| - 0.012 15.8 0.1 0.073 13.3 0.0 2.1 1 1 1 2 2 2 0 ABC transporter OEP PF02321.13 gi|557693588|ref|YP_008796642.1| - 0.023 14.2 2.1 6.7 6.2 0.0 2.9 3 0 0 3 3 3 0 Outer membrane efflux protein PduV-EutP PF10662.4 gi|557693588|ref|YP_008796642.1| - 0.046 13.2 0.0 3 7.3 0.0 2.7 2 1 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation HTH_19 PF12844.2 gi|557693588|ref|YP_008796642.1| - 0.08 13.0 0.8 3.7 7.6 0.0 3.3 2 1 1 3 3 3 0 Helix-turn-helix domain Dynamin_N PF00350.18 gi|557693588|ref|YP_008796642.1| - 0.13 12.1 0.3 0.39 10.5 0.0 1.9 2 1 0 2 2 2 0 Dynamin family AAA_23 PF13476.1 gi|557693588|ref|YP_008796642.1| - 0.72 10.1 6.4 4.1 7.6 0.1 2.5 2 0 0 2 2 2 0 AAA domain TGT_C2 PF14810.1 gi|557693589|ref|YP_008796643.1| - 1.7e-23 82.2 0.0 2.8e-23 81.5 0.0 1.4 1 0 0 1 1 1 1 Patch-forming domain C2 of tRNA-guanine transglycosylase PUA PF01472.15 gi|557693589|ref|YP_008796643.1| - 6.4e-12 45.0 5.6 9.5e-12 44.4 3.9 1.3 1 0 0 1 1 1 1 PUA domain UPF0113 PF03657.8 gi|557693589|ref|YP_008796643.1| - 0.014 15.0 0.0 0.018 14.7 0.0 1.1 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0113) FBPase PF00316.15 gi|557693589|ref|YP_008796643.1| - 0.02 13.7 0.0 0.024 13.4 0.0 1.1 1 0 0 1 1 1 0 Fructose-1-6-bisphosphatase UBA PF00627.26 gi|557693590|ref|YP_008796644.1| - 2.8e-07 30.1 0.0 5.9e-07 29.1 0.0 1.6 1 0 0 1 1 1 1 UBA/TS-N domain NAC PF01849.13 gi|557693590|ref|YP_008796644.1| - 6.3e-07 28.8 0.1 1e-06 28.1 0.1 1.4 1 0 0 1 1 1 1 NAC domain UBA_4 PF14555.1 gi|557693590|ref|YP_008796644.1| - 0.0033 16.9 0.0 0.005 16.3 0.0 1.3 1 0 0 1 1 1 1 UBA-like domain HTH_20 PF12840.2 gi|557693591|ref|YP_008796645.1| - 5.1e-10 39.0 0.1 2.1e-09 37.0 0.0 2.2 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|557693591|ref|YP_008796645.1| - 1e-07 31.4 0.4 2.5e-06 27.0 0.1 3.2 2 1 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_45 PF14947.1 gi|557693591|ref|YP_008796645.1| - 2.1e-06 27.4 0.9 5e-06 26.2 0.6 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix ATP-cone PF03477.11 gi|557693591|ref|YP_008796645.1| - 7.7e-05 23.0 0.1 0.00019 21.8 0.1 1.7 1 1 0 1 1 1 1 ATP cone domain DUF4364 PF14277.1 gi|557693591|ref|YP_008796645.1| - 0.00095 18.8 0.2 0.006 16.2 0.2 2.0 1 1 1 2 2 2 1 Domain of unknown function (DUF4364) TerB PF05099.8 gi|557693591|ref|YP_008796645.1| - 0.012 15.3 0.1 0.028 14.1 0.1 1.6 1 0 0 1 1 1 0 Tellurite resistance protein TerB OTCace PF00185.19 gi|557693592|ref|YP_008796646.1| - 5.9e-50 169.2 0.2 1.2e-49 168.1 0.1 1.6 2 0 0 2 2 2 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain OTCace_N PF02729.16 gi|557693592|ref|YP_008796646.1| - 2e-46 157.1 0.0 4.6e-46 156.0 0.0 1.5 2 0 0 2 2 2 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain Oxidored_nitro PF00148.14 gi|557693592|ref|YP_008796646.1| - 0.017 13.8 0.0 0.023 13.3 0.0 1.2 1 0 0 1 1 1 0 Nitrogenase component 1 type Oxidoreductase Fe-ADH PF00465.14 gi|557693592|ref|YP_008796646.1| - 0.081 11.5 0.0 0.19 10.3 0.0 1.6 2 0 0 2 2 2 0 Iron-containing alcohol dehydrogenase Spt5-NGN PF03439.8 gi|557693593|ref|YP_008796647.1| - 2.9e-15 55.7 0.0 1.1e-09 37.9 0.0 2.4 2 0 0 2 2 2 2 Early transcription elongation factor of RNA pol II, NGN section KOW PF00467.24 gi|557693593|ref|YP_008796647.1| - 3.1e-05 23.5 0.4 6.6e-05 22.4 0.3 1.6 1 0 0 1 1 1 1 KOW motif NusG PF02357.14 gi|557693593|ref|YP_008796647.1| - 0.00033 20.8 0.0 0.5 10.6 0.0 2.5 2 0 0 2 2 2 2 Transcription termination factor nusG Ribosomal_L11 PF00298.14 gi|557693594|ref|YP_008796648.1| - 1.8e-23 82.4 0.8 2.4e-23 82.0 0.5 1.2 1 0 0 1 1 1 1 Ribosomal protein L11, RNA binding domain Ribosomal_L11_N PF03946.9 gi|557693594|ref|YP_008796648.1| - 5.7e-19 67.3 0.1 9.6e-19 66.6 0.1 1.4 1 0 0 1 1 1 1 Ribosomal protein L11, N-terminal domain Ribosomal_L1 PF00687.16 gi|557693595|ref|YP_008796649.1| - 2.8e-44 151.1 2.5 3.4e-44 150.8 1.8 1.0 1 0 0 1 1 1 1 Ribosomal protein L1p/L10e family PrkA PF06798.7 gi|557693595|ref|YP_008796649.1| - 0.19 10.9 1.9 0.21 10.8 0.1 1.8 2 0 0 2 2 2 0 PrkA serine protein kinase C-terminal domain Cep57_MT_bd PF06657.8 gi|557693595|ref|YP_008796649.1| - 0.35 10.8 1.9 11 6.0 0.1 2.6 2 0 0 2 2 2 0 Centrosome microtubule-binding domain of Cep57 Ribosomal_L10 PF00466.15 gi|557693596|ref|YP_008796650.1| - 8e-18 64.2 1.5 1.3e-17 63.5 0.5 1.6 2 0 0 2 2 2 1 Ribosomal protein L10 tRNA-synt_2c PF01411.14 gi|557693597|ref|YP_008796651.1| - 2.4e-111 372.7 0.0 3.3e-111 372.2 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class II (A) tRNA_SAD PF07973.9 gi|557693597|ref|YP_008796651.1| - 3.2e-13 49.3 0.4 6.2e-13 48.4 0.3 1.5 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain DHHA1 PF02272.14 gi|557693597|ref|YP_008796651.1| - 0.0052 16.4 1.1 0.015 14.9 0.8 1.8 1 0 0 1 1 1 1 DHHA1 domain DrsE_2 PF13686.1 gi|557693597|ref|YP_008796651.1| - 0.019 14.7 0.0 0.036 13.8 0.0 1.4 1 0 0 1 1 1 0 DsrE/DsrF/DrsH-like family DegT_DnrJ_EryC1 PF01041.12 gi|557693597|ref|YP_008796651.1| - 0.061 12.3 0.0 0.11 11.4 0.0 1.4 1 0 0 1 1 1 0 DegT/DnrJ/EryC1/StrS aminotransferase family OS-D PF03392.8 gi|557693597|ref|YP_008796651.1| - 0.15 12.0 0.0 0.34 10.9 0.0 1.5 1 0 0 1 1 1 0 Insect pheromone-binding family, A10/OS-D ABC_tran PF00005.22 gi|557693599|ref|YP_008796653.1| - 4.4e-30 104.7 0.0 5.7e-30 104.4 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|557693599|ref|YP_008796653.1| - 1.3e-14 54.8 0.3 4.1e-09 36.8 0.0 2.1 1 1 1 2 2 2 2 AAA domain AAA_15 PF13175.1 gi|557693599|ref|YP_008796653.1| - 0.00064 18.8 0.0 0.043 12.8 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain AAA_29 PF13555.1 gi|557693599|ref|YP_008796653.1| - 0.0008 18.8 0.0 0.0013 18.2 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|557693599|ref|YP_008796653.1| - 0.0079 16.5 0.0 0.013 15.8 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|557693599|ref|YP_008796653.1| - 0.016 15.2 0.4 0.43 10.5 0.1 2.2 2 1 0 2 2 2 0 AAA ATPase domain AAA_19 PF13245.1 gi|557693599|ref|YP_008796653.1| - 0.021 14.5 0.0 0.05 13.3 0.0 1.6 1 0 0 1 1 1 0 Part of AAA domain UPF0079 PF02367.12 gi|557693599|ref|YP_008796653.1| - 0.023 14.3 0.2 0.55 9.8 0.1 2.2 2 0 0 2 2 2 0 Uncharacterised P-loop hydrolase UPF0079 T2SE PF00437.15 gi|557693599|ref|YP_008796653.1| - 0.027 13.3 0.1 0.048 12.5 0.1 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA PF00004.24 gi|557693599|ref|YP_008796653.1| - 0.035 14.3 0.0 0.21 11.7 0.0 2.0 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) SbcCD_C PF13558.1 gi|557693599|ref|YP_008796653.1| - 0.069 13.0 0.0 0.12 12.2 0.0 1.4 1 0 0 1 1 1 0 Putative exonuclease SbcCD, C subunit Arch_ATPase PF01637.13 gi|557693599|ref|YP_008796653.1| - 0.072 12.7 0.0 0.12 12.0 0.0 1.6 1 1 0 1 1 1 0 Archaeal ATPase AAA_25 PF13481.1 gi|557693599|ref|YP_008796653.1| - 0.096 12.0 0.2 0.65 9.3 0.0 2.1 2 1 0 2 2 2 0 AAA domain AAA_30 PF13604.1 gi|557693599|ref|YP_008796653.1| - 0.1 12.1 0.0 0.23 11.0 0.0 1.5 2 0 0 2 2 2 0 AAA domain AAA_10 PF12846.2 gi|557693599|ref|YP_008796653.1| - 0.13 11.7 0.2 0.24 10.8 0.2 1.4 1 0 0 1 1 1 0 AAA-like domain AAA_22 PF13401.1 gi|557693599|ref|YP_008796653.1| - 0.13 12.4 0.3 0.53 10.4 0.2 2.1 1 1 0 1 1 1 0 AAA domain NACHT PF05729.7 gi|557693599|ref|YP_008796653.1| - 0.2 11.3 0.8 0.88 9.2 0.1 2.1 2 1 0 2 2 2 0 NACHT domain Ribosomal_60s PF00428.14 gi|557693600|ref|YP_008796654.1| - 4.7e-14 52.5 14.0 5.9e-14 52.2 9.7 1.1 1 0 0 1 1 1 1 60s Acidic ribosomal protein TerB-C PF15615.1 gi|557693600|ref|YP_008796654.1| - 0.054 13.7 1.6 0.063 13.5 1.1 1.1 1 0 0 1 1 1 0 TerB-C domain DUF2057 PF09829.4 gi|557693600|ref|YP_008796654.1| - 0.083 12.5 1.0 0.095 12.3 0.7 1.1 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2057) Stm1_N PF09598.5 gi|557693600|ref|YP_008796654.1| - 0.83 10.3 5.8 1.3 9.8 4.0 1.2 1 0 0 1 1 1 0 Stm1 DUF763 PF05559.6 gi|557693601|ref|YP_008796655.1| - 2e-84 283.3 0.0 2.3e-84 283.0 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF763) DUF2336 PF10098.4 gi|557693601|ref|YP_008796655.1| - 0.013 14.7 1.1 0.037 13.2 0.1 2.1 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2336) EF1_GNE PF00736.14 gi|557693602|ref|YP_008796656.1| - 6.4e-17 61.0 0.1 7e-17 60.9 0.1 1.0 1 0 0 1 1 1 1 EF-1 guanine nucleotide exchange domain NTP_transf_3 PF12804.2 gi|557693603|ref|YP_008796657.1| - 8.5e-26 90.9 0.1 1.4e-25 90.2 0.1 1.4 1 0 0 1 1 1 1 MobA-like NTP transferase domain CTP_transf_3 PF02348.14 gi|557693603|ref|YP_008796657.1| - 0.0013 18.3 0.0 0.0021 17.7 0.0 1.5 1 1 0 1 1 1 1 Cytidylyltransferase SNAP PF14938.1 gi|557693603|ref|YP_008796657.1| - 0.0025 17.0 1.0 0.0042 16.2 0.7 1.3 1 0 0 1 1 1 1 Soluble NSF attachment protein, SNAP DOG1 PF14144.1 gi|557693603|ref|YP_008796657.1| - 0.089 12.8 0.0 0.25 11.4 0.0 1.8 1 0 0 1 1 1 0 Seed dormancy control MobB PF03205.9 gi|557693604|ref|YP_008796658.1| - 9.9e-25 86.8 0.1 1.2e-24 86.6 0.1 1.1 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B CbiA PF01656.18 gi|557693604|ref|YP_008796658.1| - 0.0019 17.6 0.0 0.003 16.9 0.0 1.4 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain PduV-EutP PF10662.4 gi|557693604|ref|YP_008796658.1| - 0.039 13.4 0.0 0.047 13.1 0.0 1.2 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation AAA_25 PF13481.1 gi|557693604|ref|YP_008796658.1| - 0.078 12.3 0.0 0.12 11.7 0.0 1.3 1 0 0 1 1 1 0 AAA domain Torsin PF06309.6 gi|557693604|ref|YP_008796658.1| - 0.087 12.7 0.0 0.14 12.0 0.0 1.3 1 0 0 1 1 1 0 Torsin AAA_14 PF13173.1 gi|557693604|ref|YP_008796658.1| - 0.11 12.3 0.0 0.13 12.2 0.0 1.3 1 0 0 1 1 1 0 AAA domain NTPase_1 PF03266.10 gi|557693604|ref|YP_008796658.1| - 0.11 12.1 0.2 1.5 8.4 0.0 2.3 2 1 0 2 2 2 0 NTPase Rib_5-P_isom_A PF06026.9 gi|557693605|ref|YP_008796659.1| - 2.8e-48 163.4 0.0 3.5e-48 163.1 0.0 1.1 1 0 0 1 1 1 1 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) DeoRC PF00455.17 gi|557693605|ref|YP_008796659.1| - 2.3e-06 27.3 0.0 1.6e-05 24.6 0.0 1.9 2 0 0 2 2 2 1 DeoR C terminal sensor domain WASH-7_C PF14746.1 gi|557693605|ref|YP_008796659.1| - 0.19 11.2 0.2 2.3 7.7 0.0 2.1 2 0 0 2 2 2 0 WASH complex subunit 7, C-terminal DUF996 PF06195.8 gi|557693606|ref|YP_008796660.1| - 4.3e-29 101.2 22.0 4.3e-29 101.2 15.3 1.7 2 0 0 2 2 2 1 Protein of unknown function (DUF996) Yip1 PF04893.12 gi|557693606|ref|YP_008796660.1| - 0.044 13.2 33.5 0.074 12.5 23.2 1.4 1 1 0 1 1 1 0 Yip1 domain DUF962 PF06127.6 gi|557693606|ref|YP_008796660.1| - 0.79 9.6 10.1 0.67 9.8 0.8 2.8 1 1 1 3 3 3 0 Protein of unknown function (DUF962) Cytochrom_B_N PF00033.14 gi|557693606|ref|YP_008796660.1| - 1.5 8.1 17.1 7.8 5.8 8.3 2.6 2 1 0 2 2 2 0 Cytochrome b(N-terminal)/b6/petB DUF973 PF06157.6 gi|557693606|ref|YP_008796660.1| - 7 5.5 32.2 45 2.8 14.5 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF973) TrmB PF01978.14 gi|557693607|ref|YP_008796661.1| - 8.6e-16 57.4 0.3 8.2e-14 51.0 0.0 2.3 1 1 1 2 2 2 2 Sugar-specific transcriptional regulator TrmB DUF4423 PF14394.1 gi|557693607|ref|YP_008796661.1| - 0.0056 16.2 0.0 0.012 15.1 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4423) Ubie_methyltran PF01209.13 gi|557693608|ref|YP_008796662.1| - 3.9e-20 71.9 0.0 4.6e-20 71.7 0.0 1.0 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_11 PF08241.7 gi|557693608|ref|YP_008796662.1| - 1.4e-15 57.5 0.0 2e-15 57.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|557693608|ref|YP_008796662.1| - 4.8e-11 42.6 0.0 6.6e-11 42.1 0.0 1.3 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|557693608|ref|YP_008796662.1| - 1.7e-09 38.2 0.0 2.8e-09 37.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|557693608|ref|YP_008796662.1| - 2.2e-08 34.4 0.0 3.3e-08 33.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|557693608|ref|YP_008796662.1| - 4.5e-08 32.8 0.0 5.9e-08 32.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|557693608|ref|YP_008796662.1| - 3.4e-07 30.5 0.0 6.2e-07 29.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain FtsJ PF01728.14 gi|557693608|ref|YP_008796662.1| - 2.6e-05 24.2 0.0 9.7e-05 22.4 0.0 1.9 1 1 0 1 1 1 1 FtsJ-like methyltransferase Methyltransf_26 PF13659.1 gi|557693608|ref|YP_008796662.1| - 0.00027 20.9 0.0 0.00043 20.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|557693608|ref|YP_008796662.1| - 0.0023 17.3 0.0 0.0041 16.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_8 PF05148.10 gi|557693608|ref|YP_008796662.1| - 0.0045 16.6 0.0 0.0066 16.1 0.0 1.2 1 0 0 1 1 1 1 Hypothetical methyltransferase PCMT PF01135.14 gi|557693608|ref|YP_008796662.1| - 0.0062 16.0 0.0 0.0095 15.4 0.0 1.4 1 1 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) NNMT_PNMT_TEMT PF01234.12 gi|557693608|ref|YP_008796662.1| - 0.0087 15.0 0.0 1.4 7.8 0.0 2.2 1 1 0 2 2 2 1 NNMT/PNMT/TEMT family RrnaAD PF00398.15 gi|557693608|ref|YP_008796662.1| - 0.064 12.2 0.0 0.092 11.7 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase MetW PF07021.7 gi|557693608|ref|YP_008796662.1| - 0.091 12.1 0.0 0.16 11.3 0.0 1.3 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW V4R PF02830.13 gi|557693609|ref|YP_008796663.1| - 3.3e-06 26.8 3.6 5.9e-06 26.0 2.5 1.4 1 0 0 1 1 1 1 V4R domain UbiA PF01040.13 gi|557693610|ref|YP_008796664.1| - 3.5e-26 91.9 30.8 5.8e-26 91.2 21.4 1.3 1 0 0 1 1 1 1 UbiA prenyltransferase family DUF1077 PF06417.7 gi|557693611|ref|YP_008796665.1| - 0.0032 16.8 0.0 0.008 15.5 0.0 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF1077) Presenilin PF01080.12 gi|557693612|ref|YP_008796666.1| - 2.3e-07 30.0 27.0 7.5e-05 21.7 3.2 2.4 1 1 1 2 2 2 2 Presenilin DUF1119 PF06550.6 gi|557693612|ref|YP_008796666.1| - 2.9e-06 26.6 12.8 2.9e-06 26.6 8.9 2.0 1 1 1 2 2 2 1 Protein of unknown function (DUF1119) DUF3488 PF11992.3 gi|557693612|ref|YP_008796666.1| - 2.2 6.8 12.6 3.4 6.2 8.7 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF3488) CitG PF01874.11 gi|557693613|ref|YP_008796667.1| - 2.2e-54 184.5 0.1 2.6e-54 184.2 0.1 1.0 1 0 0 1 1 1 1 ATP:dephospho-CoA triphosphoribosyl transferase HTH_Tnp_Mu_2 PF09039.6 gi|557693613|ref|YP_008796667.1| - 0.015 14.9 0.1 0.028 14.1 0.1 1.4 1 0 0 1 1 1 0 Mu DNA binding, I gamma subdomain DUF4295 PF14128.1 gi|557693613|ref|YP_008796667.1| - 0.12 11.9 0.3 12 5.6 0.0 2.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4295) Ni_hydr_CYTB PF01292.15 gi|557693614|ref|YP_008796668.1| - 0.076 12.3 3.8 0.035 13.4 1.2 1.5 1 1 0 1 1 1 0 Prokaryotic cytochrome b561 5TM-5TMR_LYT PF07694.7 gi|557693614|ref|YP_008796668.1| - 0.14 11.4 6.7 0.18 11.1 4.6 1.1 1 0 0 1 1 1 0 5TMR of 5TMR-LYT UPF0233 PF06781.7 gi|557693614|ref|YP_008796668.1| - 0.95 9.1 4.2 1.8 8.2 2.9 1.8 1 1 0 1 1 1 0 Uncharacterised protein family (UPF0233) DUF1129 PF06570.6 gi|557693614|ref|YP_008796668.1| - 2.2 7.5 6.9 2.6 7.2 4.8 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1129) HTH_5 PF01022.15 gi|557693615|ref|YP_008796669.1| - 4.1e-12 45.5 0.3 7.6e-12 44.7 0.0 1.6 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|557693615|ref|YP_008796669.1| - 2e-05 24.2 0.0 3.2e-05 23.6 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_45 PF14947.1 gi|557693615|ref|YP_008796669.1| - 3.3e-05 23.6 0.3 5.1e-05 23.0 0.1 1.4 2 0 0 2 2 2 1 Winged helix-turn-helix TrmB PF01978.14 gi|557693615|ref|YP_008796669.1| - 3.6e-05 23.3 0.0 6.8e-05 22.4 0.0 1.4 1 1 1 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.1 gi|557693615|ref|YP_008796669.1| - 0.00059 19.1 0.1 0.0011 18.3 0.1 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.7 gi|557693615|ref|YP_008796669.1| - 0.0056 16.3 0.0 0.0084 15.7 0.0 1.2 1 0 0 1 1 1 1 HTH domain Rrf2 PF02082.15 gi|557693615|ref|YP_008796669.1| - 0.0092 16.0 0.0 0.014 15.4 0.0 1.3 1 1 0 1 1 1 1 Transcriptional regulator MarR PF01047.17 gi|557693615|ref|YP_008796669.1| - 0.048 13.3 0.0 0.073 12.7 0.0 1.2 1 0 0 1 1 1 0 MarR family HxlR PF01638.12 gi|557693615|ref|YP_008796669.1| - 0.058 13.0 0.0 0.079 12.5 0.0 1.2 1 0 0 1 1 1 0 HxlR-like helix-turn-helix HTH_29 PF13551.1 gi|557693615|ref|YP_008796669.1| - 0.073 13.2 0.0 0.11 12.7 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn helix MarR_2 PF12802.2 gi|557693615|ref|YP_008796669.1| - 0.099 12.3 0.0 0.19 11.4 0.0 1.4 1 0 0 1 1 1 0 MarR family RuvB_C PF05491.8 gi|557693615|ref|YP_008796669.1| - 0.12 11.9 0.1 0.25 11.0 0.0 1.5 2 0 0 2 2 2 0 Holliday junction DNA helicase ruvB C-terminus Cyclase PF04199.8 gi|557693616|ref|YP_008796670.1| - 2.4e-40 138.0 0.0 3.2e-40 137.6 0.0 1.2 1 0 0 1 1 1 1 Putative cyclase CoA_transf_3 PF02515.12 gi|557693617|ref|YP_008796671.1| - 1.3e-60 203.9 0.0 1.7e-60 203.5 0.0 1.1 1 0 0 1 1 1 1 CoA-transferase family III ECH PF00378.15 gi|557693618|ref|YP_008796672.1| - 1.1e-55 188.4 0.0 1.4e-55 188.0 0.0 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase family ECH_C PF13766.1 gi|557693618|ref|YP_008796672.1| - 0.00032 20.8 0.0 0.00058 19.9 0.0 1.4 1 0 0 1 1 1 1 2-enoyl-CoA Hydratase C-terminal region ICE2 PF08426.5 gi|557693618|ref|YP_008796672.1| - 0.066 11.8 0.0 0.085 11.4 0.0 1.1 1 0 0 1 1 1 0 ICE2 DUF655 PF04919.7 gi|557693619|ref|YP_008796673.1| - 3.9e-48 163.5 0.6 4.4e-48 163.3 0.4 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF655) HHH_6 PF14579.1 gi|557693619|ref|YP_008796673.1| - 0.00071 19.5 0.0 0.0024 17.8 0.0 1.8 1 1 0 1 1 1 1 Helix-hairpin-helix motif HHH_3 PF12836.2 gi|557693619|ref|YP_008796673.1| - 0.033 14.1 0.0 0.085 12.8 0.0 1.6 1 1 0 1 1 1 0 Helix-hairpin-helix motif XPC-binding PF09280.6 gi|557693619|ref|YP_008796673.1| - 0.048 13.1 0.0 0.13 11.6 0.0 1.7 1 0 0 1 1 1 0 XPC-binding domain RNA_pol_Rpb4 PF03874.11 gi|557693620|ref|YP_008796674.1| - 1.6e-11 44.2 0.2 1.9e-11 43.9 0.2 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb4 Rabaptin PF03528.10 gi|557693620|ref|YP_008796674.1| - 0.013 15.4 0.2 0.019 14.8 0.2 1.3 1 1 0 1 1 1 0 Rabaptin FtsK_SpoIIIE PF01580.13 gi|557693620|ref|YP_008796674.1| - 0.018 14.5 0.2 0.023 14.1 0.1 1.0 1 0 0 1 1 1 0 FtsK/SpoIIIE family Ribosomal_L21e PF01157.13 gi|557693621|ref|YP_008796675.1| - 9.6e-20 70.2 0.3 1.1e-19 69.9 0.2 1.0 1 0 0 1 1 1 1 Ribosomal protein L21e THUMP PF02926.12 gi|557693622|ref|YP_008796676.1| - 2.9e-08 33.7 2.4 3.5e-08 33.4 0.2 2.1 3 0 0 3 3 3 1 THUMP domain SRP54 PF00448.17 gi|557693623|ref|YP_008796677.1| - 1.1e-71 240.3 0.0 1.5e-71 239.8 0.0 1.2 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP_SPB PF02978.14 gi|557693623|ref|YP_008796677.1| - 1.7e-29 102.1 0.0 4.7e-29 100.6 0.0 1.8 1 0 0 1 1 1 1 Signal peptide binding domain SRP54_N PF02881.14 gi|557693623|ref|YP_008796677.1| - 1.3e-13 50.8 2.0 1.5e-13 50.6 0.2 2.1 2 0 0 2 2 1 1 SRP54-type protein, helical bundle domain CbiA PF01656.18 gi|557693623|ref|YP_008796677.1| - 1e-06 28.2 0.0 3e-06 26.7 0.0 1.8 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain MobB PF03205.9 gi|557693623|ref|YP_008796677.1| - 2.8e-05 23.8 0.6 6.8e-05 22.6 0.4 1.7 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_22 PF13401.1 gi|557693623|ref|YP_008796677.1| - 4.8e-05 23.4 0.0 0.00026 21.1 0.0 2.2 2 0 0 2 2 1 1 AAA domain AAA_17 PF13207.1 gi|557693623|ref|YP_008796677.1| - 6.5e-05 23.7 0.4 0.00045 21.0 0.0 2.6 3 1 0 3 3 1 1 AAA domain AAA_18 PF13238.1 gi|557693623|ref|YP_008796677.1| - 8e-05 22.9 0.5 0.0082 16.4 0.2 3.1 2 1 0 2 2 2 1 AAA domain cobW PF02492.14 gi|557693623|ref|YP_008796677.1| - 0.00013 21.4 1.1 0.002 17.5 0.8 2.3 1 1 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain AAA_33 PF13671.1 gi|557693623|ref|YP_008796677.1| - 0.00016 21.5 0.0 0.00041 20.2 0.0 1.7 2 0 0 2 2 1 1 AAA domain Zeta_toxin PF06414.7 gi|557693623|ref|YP_008796677.1| - 0.00031 19.9 0.0 0.00067 18.8 0.0 1.5 1 0 0 1 1 1 1 Zeta toxin AAA_19 PF13245.1 gi|557693623|ref|YP_008796677.1| - 0.00055 19.6 0.0 0.0027 17.4 0.0 2.1 2 0 0 2 2 2 1 Part of AAA domain 6PF2K PF01591.13 gi|557693623|ref|YP_008796677.1| - 0.0006 18.9 0.0 0.00096 18.2 0.0 1.3 1 0 0 1 1 1 1 6-phosphofructo-2-kinase ArgK PF03308.11 gi|557693623|ref|YP_008796677.1| - 0.0011 17.7 0.5 0.026 13.2 0.1 2.4 2 0 0 2 2 2 1 ArgK protein AAA_31 PF13614.1 gi|557693623|ref|YP_008796677.1| - 0.0019 18.1 0.0 0.078 12.9 0.0 2.8 3 0 0 3 3 2 1 AAA domain AAA_28 PF13521.1 gi|557693623|ref|YP_008796677.1| - 0.0019 18.1 0.7 0.04 13.8 0.2 2.6 2 1 1 3 3 3 1 AAA domain AAA_10 PF12846.2 gi|557693623|ref|YP_008796677.1| - 0.0024 17.3 0.1 0.0046 16.4 0.0 1.5 1 1 0 1 1 1 1 AAA-like domain AAA_30 PF13604.1 gi|557693623|ref|YP_008796677.1| - 0.0036 16.8 1.0 0.061 12.9 0.2 2.6 2 1 0 2 2 2 1 AAA domain APS_kinase PF01583.15 gi|557693623|ref|YP_008796677.1| - 0.0051 16.4 0.0 0.012 15.2 0.0 1.6 1 0 0 1 1 1 1 Adenylylsulphate kinase AAA_24 PF13479.1 gi|557693623|ref|YP_008796677.1| - 0.011 15.3 0.0 0.027 14.0 0.0 1.7 1 1 0 1 1 1 0 AAA domain AAA PF00004.24 gi|557693623|ref|YP_008796677.1| - 0.011 15.8 2.3 0.027 14.6 0.9 2.3 2 1 0 2 2 1 0 ATPase family associated with various cellular activities (AAA) AAA_25 PF13481.1 gi|557693623|ref|YP_008796677.1| - 0.026 13.9 4.2 0.27 10.6 0.9 2.8 2 1 0 2 2 2 0 AAA domain LpxK PF02606.9 gi|557693623|ref|YP_008796677.1| - 0.037 12.9 0.7 0.086 11.7 0.1 1.7 2 0 0 2 2 2 0 Tetraacyldisaccharide-1-P 4'-kinase NACHT PF05729.7 gi|557693623|ref|YP_008796677.1| - 0.039 13.6 0.2 0.1 12.2 0.1 1.9 2 1 0 2 2 1 0 NACHT domain IMPDH PF00478.20 gi|557693623|ref|YP_008796677.1| - 0.04 12.8 0.8 0.086 11.7 0.1 1.8 3 0 0 3 3 3 0 IMP dehydrogenase / GMP reductase domain KTI12 PF08433.5 gi|557693623|ref|YP_008796677.1| - 0.043 13.0 0.1 0.11 11.6 0.0 1.7 2 0 0 2 2 1 0 Chromatin associated protein KTI12 MipZ PF09140.6 gi|557693623|ref|YP_008796677.1| - 0.043 12.8 0.6 0.79 8.7 0.4 2.4 1 1 0 1 1 1 0 ATPase MipZ NTPase_1 PF03266.10 gi|557693623|ref|YP_008796677.1| - 0.051 13.2 1.2 0.12 12.0 0.1 2.1 2 0 0 2 2 2 0 NTPase Thymidylate_kin PF02223.12 gi|557693623|ref|YP_008796677.1| - 0.054 12.8 0.3 0.16 11.3 0.2 1.8 1 0 0 1 1 1 0 Thymidylate kinase AAA_5 PF07728.9 gi|557693623|ref|YP_008796677.1| - 0.06 13.0 0.5 0.34 10.6 0.2 2.3 2 1 1 3 3 3 0 AAA domain (dynein-related subfamily) AAA_11 PF13086.1 gi|557693623|ref|YP_008796677.1| - 0.1 12.1 0.2 2.1 7.8 0.0 2.4 2 1 0 2 2 2 0 AAA domain ResIII PF04851.10 gi|557693623|ref|YP_008796677.1| - 0.13 12.0 0.0 0.25 11.1 0.0 1.5 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit Epimerase PF01370.16 gi|557693624|ref|YP_008796678.1| - 2.6e-48 164.5 0.0 3.2e-48 164.2 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.12 gi|557693624|ref|YP_008796678.1| - 3.3e-22 78.7 0.0 3.8e-22 78.5 0.0 1.0 1 0 0 1 1 1 1 RmlD substrate binding domain 3Beta_HSD PF01073.14 gi|557693624|ref|YP_008796678.1| - 6.1e-15 54.6 0.0 2.1e-13 49.6 0.0 2.1 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_4 PF07993.7 gi|557693624|ref|YP_008796678.1| - 3.8e-13 48.9 0.1 8.6e-12 44.5 0.0 2.2 2 0 0 2 2 2 1 Male sterility protein Polysacc_synt_2 PF02719.10 gi|557693624|ref|YP_008796678.1| - 1.2e-12 47.4 0.0 2.9e-11 42.8 0.0 2.4 3 0 0 3 3 3 1 Polysaccharide biosynthesis protein NAD_binding_10 PF13460.1 gi|557693624|ref|YP_008796678.1| - 3.5e-08 33.6 0.0 5.3e-08 33.0 0.0 1.3 1 0 0 1 1 1 1 NADH(P)-binding adh_short PF00106.20 gi|557693624|ref|YP_008796678.1| - 4.8e-06 26.5 3.2 4.6e-05 23.3 1.7 2.5 2 1 0 2 2 2 1 short chain dehydrogenase KR PF08659.5 gi|557693624|ref|YP_008796678.1| - 0.0089 15.7 1.2 0.082 12.5 0.1 2.2 1 1 1 2 2 2 1 KR domain Ribonuc_red_2_N PF08471.5 gi|557693624|ref|YP_008796678.1| - 0.13 12.3 0.0 0.41 10.7 0.0 1.7 2 0 0 2 2 2 0 Class II vitamin B12-dependent ribonucleotide reductase MOSC_N PF03476.11 gi|557693625|ref|YP_008796679.1| - 1.3e-13 50.6 0.0 2.2e-13 49.9 0.0 1.4 1 0 0 1 1 1 1 MOSC N-terminal beta barrel domain MOSC PF03473.12 gi|557693625|ref|YP_008796679.1| - 7.6e-13 48.0 0.0 1.1e-12 47.5 0.0 1.2 1 0 0 1 1 1 1 MOSC domain LAGLIDADG_3 PF14528.1 gi|557693626|ref|YP_008796680.1| - 3.7e-17 62.3 0.0 3.2e-14 52.9 0.0 2.5 2 0 0 2 2 2 2 LAGLIDADG-like domain Hom_end PF05204.9 gi|557693626|ref|YP_008796680.1| - 0.0051 16.7 0.0 0.014 15.3 0.0 1.7 2 0 0 2 2 2 1 Homing endonuclease Glycos_transf_1 PF00534.15 gi|557693627|ref|YP_008796681.1| - 1.7e-42 144.7 0.0 2.7e-42 144.0 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|557693627|ref|YP_008796681.1| - 3.9e-14 52.9 0.0 7.7e-14 51.9 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|557693627|ref|YP_008796681.1| - 6e-09 36.0 0.0 1.2e-08 35.0 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_20 PF00982.16 gi|557693627|ref|YP_008796681.1| - 0.00021 19.9 0.0 0.24 9.8 0.0 2.6 2 1 0 2 2 2 2 Glycosyltransferase family 20 HycA_repressor PF11046.3 gi|557693627|ref|YP_008796681.1| - 0.11 12.4 0.0 0.21 11.5 0.0 1.4 1 0 0 1 1 1 0 Transcriptional repressor of hyc and hyp operons AAA_24 PF13479.1 gi|557693627|ref|YP_008796681.1| - 0.15 11.6 0.0 14 5.1 0.0 2.3 2 0 0 2 2 2 0 AAA domain MS_channel PF00924.13 gi|557693628|ref|YP_008796682.1| - 3e-22 78.9 0.0 3e-22 78.9 0.0 1.4 2 0 0 2 2 2 1 Mechanosensitive ion channel Peptidase_M24 PF00557.19 gi|557693629|ref|YP_008796683.1| - 8.4e-38 130.0 0.1 1.1e-37 129.6 0.0 1.1 1 0 0 1 1 1 1 Metallopeptidase family M24 TFIIS_C PF01096.13 gi|557693630|ref|YP_008796684.1| - 0.0012 18.3 1.1 0.96 9.1 0.1 2.1 2 0 0 2 2 2 2 Transcription factor S-II (TFIIS) TF_Zn_Ribbon PF08271.7 gi|557693630|ref|YP_008796684.1| - 0.0039 16.4 2.5 0.63 9.4 0.1 2.3 2 0 0 2 2 2 2 TFIIB zinc-binding zf-FPG_IleRS PF06827.9 gi|557693630|ref|YP_008796684.1| - 0.0093 15.5 2.8 0.064 12.9 0.3 2.2 2 0 0 2 2 2 1 Zinc finger found in FPG and IleRS zinc_ribbon_2 PF13240.1 gi|557693630|ref|YP_008796684.1| - 0.016 14.7 3.4 0.99 8.9 0.3 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|557693630|ref|YP_008796684.1| - 0.017 14.2 5.6 0.1 11.8 3.9 1.9 1 1 0 1 1 1 0 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|557693630|ref|YP_008796684.1| - 0.02 14.6 0.3 1.1 9.1 0.0 2.1 2 0 0 2 2 2 0 Transposase zinc-ribbon domain zf-tcix PF14952.1 gi|557693630|ref|YP_008796684.1| - 0.061 12.6 3.9 1.5 8.1 0.9 2.2 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding Zn-ribbon_8 PF09723.5 gi|557693630|ref|YP_008796684.1| - 0.078 12.9 3.3 0.92 9.5 2.3 2.1 1 1 0 1 1 1 0 Zinc ribbon domain DnaJ_CXXCXGXG PF00684.14 gi|557693630|ref|YP_008796684.1| - 0.078 13.0 0.0 0.1 12.6 0.0 1.2 1 0 0 1 1 1 0 DnaJ central domain zf-IS66 PF13005.2 gi|557693630|ref|YP_008796684.1| - 0.081 12.9 1.1 0.19 11.6 0.1 1.9 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 DUF2752 PF10825.3 gi|557693630|ref|YP_008796684.1| - 0.081 12.9 0.4 0.5 10.4 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF2752) HypA PF01155.14 gi|557693630|ref|YP_008796684.1| - 0.1 12.3 0.1 0.13 11.9 0.1 1.1 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family zf-ISL3 PF14690.1 gi|557693630|ref|YP_008796684.1| - 0.12 12.3 1.7 1.3 9.1 0.3 2.1 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 OrfB_Zn_ribbon PF07282.6 gi|557693630|ref|YP_008796684.1| - 0.87 9.2 3.0 7 6.3 1.9 2.0 1 1 0 1 1 1 0 Putative transposase DNA-binding domain zf-CCHC PF00098.18 gi|557693630|ref|YP_008796684.1| - 1.4 8.9 6.1 9 6.4 0.8 2.2 2 0 0 2 2 2 0 Zinc knuckle PhnA_Zn_Ribbon PF08274.7 gi|557693630|ref|YP_008796684.1| - 1.4 8.7 3.6 12 5.7 0.3 2.2 2 0 0 2 2 2 0 PhnA Zinc-Ribbon zf-C4_Topoisom PF01396.14 gi|557693630|ref|YP_008796684.1| - 4 7.0 5.9 0.65 9.5 1.2 1.8 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger DUF1512 PF07431.7 gi|557693631|ref|YP_008796685.1| - 2.8e-117 391.4 5.2 3.3e-117 391.2 3.6 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1512) CK2S PF15011.1 gi|557693631|ref|YP_008796685.1| - 0.006 16.3 0.5 5.4 6.7 0.0 3.0 3 0 0 3 3 3 2 Casein Kinase 2 substrate HU-DNA_bdg PF14848.1 gi|557693631|ref|YP_008796685.1| - 0.049 13.3 3.0 0.84 9.3 0.0 2.8 3 0 0 3 3 3 0 DNA-binding domain Topoisom_bac PF01131.15 gi|557693632|ref|YP_008796686.1| - 1.1e-95 320.8 0.0 1.5e-95 320.4 0.0 1.1 1 0 0 1 1 1 1 DNA topoisomerase Toprim PF01751.17 gi|557693632|ref|YP_008796686.1| - 1.3e-11 44.3 0.0 3.1e-11 43.1 0.0 1.7 1 0 0 1 1 1 1 Toprim domain Exonuc_VII_S PF02609.11 gi|557693632|ref|YP_008796686.1| - 0.048 13.4 0.9 0.17 11.6 0.6 2.0 1 0 0 1 1 1 0 Exonuclease VII small subunit Complex1_LYR_1 PF13232.1 gi|557693632|ref|YP_008796686.1| - 0.059 13.5 0.3 0.2 11.8 0.2 1.9 1 0 0 1 1 1 0 Complex1_LYR-like adh_short_C2 PF13561.1 gi|557693634|ref|YP_008796688.1| - 2.1e-32 112.7 0.0 2.6e-32 112.5 0.0 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.20 gi|557693634|ref|YP_008796688.1| - 1.2e-29 103.3 0.1 1.6e-29 102.9 0.1 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.5 gi|557693634|ref|YP_008796688.1| - 2.7e-09 36.9 0.1 3.6e-09 36.5 0.0 1.2 1 0 0 1 1 1 1 KR domain Epimerase PF01370.16 gi|557693634|ref|YP_008796688.1| - 2e-06 27.4 0.0 1.3e-05 24.7 0.0 2.0 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3HCDH_N PF02737.13 gi|557693634|ref|YP_008796688.1| - 0.011 15.3 0.1 0.016 14.8 0.1 1.2 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Eno-Rase_NADH_b PF12242.3 gi|557693634|ref|YP_008796688.1| - 0.019 14.7 0.1 0.04 13.6 0.1 1.5 1 0 0 1 1 1 0 NAD(P)H binding domain of trans-2-enoyl-CoA reductase Polysacc_synt_2 PF02719.10 gi|557693634|ref|YP_008796688.1| - 0.1 11.5 0.0 0.14 11.0 0.0 1.2 1 0 0 1 1 1 0 Polysaccharide biosynthesis protein DNA_binding_1 PF01035.15 gi|557693635|ref|YP_008796689.1| - 2.7e-29 100.7 0.0 4.1e-29 100.1 0.0 1.3 1 0 0 1 1 1 1 6-O-methylguanine DNA methyltransferase, DNA binding domain Rdx PF10262.4 gi|557693636|ref|YP_008796690.1| - 5.7e-18 64.7 0.0 6.3e-18 64.5 0.0 1.0 1 0 0 1 1 1 1 Rdx family DUF3994 PF13159.1 gi|557693636|ref|YP_008796690.1| - 0.12 12.6 0.0 0.18 12.0 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF3994) PQQ PF01011.16 gi|557693637|ref|YP_008796691.1| - 4.3e-29 98.5 0.1 1.8e-06 27.1 0.0 7.5 7 1 0 7 7 7 5 PQQ enzyme repeat PQQ_2 PF13360.1 gi|557693637|ref|YP_008796691.1| - 3.3e-21 75.8 0.1 6.1e-07 29.1 0.0 3.6 3 1 0 3 3 3 3 PQQ-like domain PQQ_3 PF13570.1 gi|557693637|ref|YP_008796691.1| - 2.5e-06 27.5 13.1 0.006 16.8 0.1 6.7 8 1 0 8 8 8 2 PQQ-like domain COX2 PF00116.15 gi|557693638|ref|YP_008796692.1| - 0.00071 19.3 0.2 0.00071 19.3 0.1 1.9 2 0 0 2 2 2 1 Cytochrome C oxidase subunit II, periplasmic domain ABC_tran PF00005.22 gi|557693640|ref|YP_008796694.1| - 1.8e-33 115.7 0.0 4.1e-33 114.5 0.0 1.6 2 0 0 2 2 1 1 ABC transporter TOBE_2 PF08402.5 gi|557693640|ref|YP_008796694.1| - 4.1e-09 36.3 0.3 2.4e-08 33.8 0.0 2.4 3 0 0 3 3 3 1 TOBE domain AAA_21 PF13304.1 gi|557693640|ref|YP_008796694.1| - 1.4e-07 31.8 0.0 0.00042 20.3 0.0 2.2 2 0 0 2 2 2 2 AAA domain TOBE PF03459.12 gi|557693640|ref|YP_008796694.1| - 0.00024 21.1 0.2 0.00086 19.3 0.0 2.1 2 0 0 2 2 2 1 TOBE domain AAA_15 PF13175.1 gi|557693640|ref|YP_008796694.1| - 0.002 17.2 0.0 0.014 14.4 0.0 2.0 1 1 0 2 2 2 1 AAA ATPase domain AAA_16 PF13191.1 gi|557693640|ref|YP_008796694.1| - 0.003 17.5 0.1 0.0068 16.4 0.0 1.5 1 0 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|557693640|ref|YP_008796694.1| - 0.0039 17.3 0.4 0.011 15.8 0.3 1.9 1 1 0 1 1 1 1 AAA domain AAA PF00004.24 gi|557693640|ref|YP_008796694.1| - 0.0055 16.9 0.1 0.015 15.5 0.1 1.9 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Rad17 PF03215.10 gi|557693640|ref|YP_008796694.1| - 0.0095 14.6 0.0 0.013 14.1 0.0 1.2 1 0 0 1 1 1 1 Rad17 cell cycle checkpoint protein DUF258 PF03193.11 gi|557693640|ref|YP_008796694.1| - 0.012 14.8 0.0 0.023 13.8 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_29 PF13555.1 gi|557693640|ref|YP_008796694.1| - 0.036 13.5 0.0 0.076 12.5 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain IstB_IS21 PF01695.12 gi|557693640|ref|YP_008796694.1| - 0.054 12.9 0.0 0.09 12.1 0.0 1.3 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_19 PF13245.1 gi|557693640|ref|YP_008796694.1| - 0.059 13.1 0.0 0.17 11.6 0.0 1.7 1 0 0 1 1 1 0 Part of AAA domain SbcCD_C PF13558.1 gi|557693640|ref|YP_008796694.1| - 0.075 12.9 0.1 0.36 10.7 0.1 2.0 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit NMT1 PF09084.6 gi|557693641|ref|YP_008796695.1| - 7.9e-09 35.4 0.0 3.5e-08 33.3 0.0 2.1 1 1 0 1 1 1 1 NMT1/THI5 like SBP_bac_3 PF00497.15 gi|557693641|ref|YP_008796695.1| - 1.9e-06 27.3 0.0 5e-06 25.9 0.0 1.9 1 1 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 Phosphonate-bd PF12974.2 gi|557693641|ref|YP_008796695.1| - 5.2e-06 26.0 0.0 1.9e-05 24.2 0.0 1.7 1 1 0 2 2 2 1 ABC transporter, phosphonate, periplasmic substrate-binding protein NMT1_2 PF13379.1 gi|557693641|ref|YP_008796695.1| - 0.018 14.3 0.0 0.74 9.1 0.0 2.3 2 0 0 2 2 2 0 NMT1-like family DUF592 PF04574.8 gi|557693641|ref|YP_008796695.1| - 0.041 13.4 0.0 0.068 12.7 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF592) BPD_transp_1 PF00528.17 gi|557693642|ref|YP_008796696.1| - 1.6e-16 60.3 47.8 1.9e-10 40.5 9.4 3.1 2 2 1 3 3 3 2 Binding-protein-dependent transport system inner membrane component SBP_bac_6 PF13343.1 gi|557693643|ref|YP_008796697.1| - 3.4e-27 95.3 0.1 5.1e-27 94.7 0.1 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.1 gi|557693643|ref|YP_008796697.1| - 4.8e-19 69.1 0.2 1.9e-18 67.2 0.0 1.9 2 0 0 2 2 2 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.1 gi|557693643|ref|YP_008796697.1| - 3.2e-16 59.6 0.1 6.2e-16 58.7 0.1 1.4 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.20 gi|557693643|ref|YP_008796697.1| - 4.5e-10 39.7 0.3 6.3e-06 26.1 0.1 2.4 2 0 0 2 2 2 2 Bacterial extracellular solute-binding protein MarR_2 PF12802.2 gi|557693644|ref|YP_008796698.1| - 9.6e-08 31.5 0.0 3.3e-07 29.8 0.0 1.9 2 0 0 2 2 2 1 MarR family HTH_20 PF12840.2 gi|557693644|ref|YP_008796698.1| - 5.5e-07 29.3 0.0 2.1e-06 27.4 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|557693644|ref|YP_008796698.1| - 2.3e-06 26.9 0.0 5.9e-06 25.5 0.0 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.15 gi|557693644|ref|YP_008796698.1| - 0.00044 19.8 0.1 0.0014 18.2 0.0 1.9 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family TrmB PF01978.14 gi|557693644|ref|YP_008796698.1| - 0.0019 17.8 0.1 0.0049 16.5 0.0 1.7 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_27 PF13463.1 gi|557693644|ref|YP_008796698.1| - 0.0023 18.2 0.0 0.0068 16.7 0.0 1.8 1 0 0 1 1 1 1 Winged helix DNA-binding domain B-block_TFIIIC PF04182.7 gi|557693644|ref|YP_008796698.1| - 0.0041 16.9 0.3 0.028 14.2 0.1 2.2 2 0 0 2 2 2 1 B-block binding subunit of TFIIIC HTH_IclR PF09339.5 gi|557693644|ref|YP_008796698.1| - 0.0059 16.1 0.0 0.011 15.3 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_Crp_2 PF13545.1 gi|557693644|ref|YP_008796698.1| - 0.0077 16.0 0.0 0.023 14.4 0.0 1.8 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain MarR PF01047.17 gi|557693644|ref|YP_008796698.1| - 0.013 15.2 0.0 0.03 14.0 0.0 1.6 1 0 0 1 1 1 0 MarR family HTH_11 PF08279.7 gi|557693644|ref|YP_008796698.1| - 0.023 14.3 0.0 0.04 13.5 0.0 1.4 1 0 0 1 1 1 0 HTH domain RP-C PF03428.8 gi|557693644|ref|YP_008796698.1| - 0.023 14.1 0.1 1.1 8.7 0.0 2.3 2 0 0 2 2 2 0 Replication protein C N-terminal domain Rrf2 PF02082.15 gi|557693644|ref|YP_008796698.1| - 0.031 14.4 0.0 0.1 12.7 0.0 1.8 2 0 0 2 2 2 0 Transcriptional regulator HTH_CodY PF08222.6 gi|557693644|ref|YP_008796698.1| - 0.12 11.6 0.0 0.23 10.8 0.0 1.5 1 0 0 1 1 1 0 CodY helix-turn-helix domain TENA_THI-4 PF03070.11 gi|557693645|ref|YP_008796699.1| - 2.2e-28 99.4 0.0 2.5e-28 99.2 0.0 1.0 1 0 0 1 1 1 1 TENA/THI-4/PQQC family Phage_int_SAM_1 PF02899.12 gi|557693645|ref|YP_008796699.1| - 0.083 13.0 0.0 0.49 10.5 0.0 2.2 1 1 0 1 1 1 0 Phage integrase, N-terminal SAM-like domain NADH-u_ox-rdase PF10785.4 gi|557693646|ref|YP_008796700.1| - 2.3 8.5 5.1 0.65 10.2 0.2 2.5 3 1 1 4 4 4 0 NADH-ubiquinone oxidoreductase complex I, 21 kDa subunit DUF1129 PF06570.6 gi|557693646|ref|YP_008796700.1| - 7.7 5.7 7.8 0.22 10.7 0.5 2.1 2 1 1 3 3 3 0 Protein of unknown function (DUF1129) Cupredoxin_1 PF13473.1 gi|557693647|ref|YP_008796701.1| - 6.8e-05 22.7 0.0 0.0067 16.3 0.0 2.2 1 1 0 1 1 1 1 Cupredoxin-like domain COX2 PF00116.15 gi|557693647|ref|YP_008796701.1| - 0.074 12.8 0.0 0.13 12.0 0.0 1.3 1 0 0 1 1 1 0 Cytochrome C oxidase subunit II, periplasmic domain NVEALA PF14055.1 gi|557693647|ref|YP_008796701.1| - 0.11 12.2 0.2 0.18 11.5 0.1 1.3 1 0 0 1 1 1 0 NVEALA protein ABC_tran PF00005.22 gi|557693648|ref|YP_008796702.1| - 1.2e-36 126.0 0.0 2.2e-36 125.1 0.0 1.5 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|557693648|ref|YP_008796702.1| - 3e-13 50.3 0.3 3.1e-07 30.6 0.0 2.1 1 1 0 2 2 2 2 AAA domain AAA_15 PF13175.1 gi|557693648|ref|YP_008796702.1| - 2.3e-06 26.9 0.0 0.0051 15.9 0.0 2.1 1 1 1 2 2 2 2 AAA ATPase domain TOBE_2 PF08402.5 gi|557693648|ref|YP_008796702.1| - 3.3e-06 26.9 0.5 1.5e-05 24.9 0.3 2.1 2 0 0 2 2 2 1 TOBE domain AAA_16 PF13191.1 gi|557693648|ref|YP_008796702.1| - 5.1e-05 23.3 0.0 0.00012 22.1 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.1 gi|557693648|ref|YP_008796702.1| - 0.00034 20.0 0.0 0.00078 18.9 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.14 gi|557693648|ref|YP_008796702.1| - 0.0004 19.6 0.1 0.0051 16.0 0.1 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain Arch_ATPase PF01637.13 gi|557693648|ref|YP_008796702.1| - 0.00043 20.0 0.0 0.00081 19.1 0.0 1.5 1 1 0 1 1 1 1 Archaeal ATPase AAA_23 PF13476.1 gi|557693648|ref|YP_008796702.1| - 0.0007 19.9 3.3 0.0043 17.3 2.3 2.0 1 1 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|557693648|ref|YP_008796702.1| - 0.0018 17.9 0.1 0.0079 15.9 0.0 2.0 2 0 0 2 2 2 1 Part of AAA domain Rad17 PF03215.10 gi|557693648|ref|YP_008796702.1| - 0.002 16.8 0.0 0.0028 16.4 0.0 1.2 1 0 0 1 1 1 1 Rad17 cell cycle checkpoint protein AAA_18 PF13238.1 gi|557693648|ref|YP_008796702.1| - 0.0072 16.6 0.2 0.026 14.8 0.0 1.9 1 1 0 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|557693648|ref|YP_008796702.1| - 0.011 15.8 0.1 0.033 14.3 0.1 1.9 1 1 0 1 1 1 0 AAA domain AAA PF00004.24 gi|557693648|ref|YP_008796702.1| - 0.015 15.5 0.0 0.043 14.0 0.0 1.9 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_17 PF13207.1 gi|557693648|ref|YP_008796702.1| - 0.022 15.5 0.5 0.066 14.0 0.3 2.0 1 1 0 1 1 1 0 AAA domain AAA_25 PF13481.1 gi|557693648|ref|YP_008796702.1| - 0.044 13.1 0.0 0.22 10.8 0.0 2.1 2 0 0 2 2 2 0 AAA domain DUF258 PF03193.11 gi|557693648|ref|YP_008796702.1| - 0.051 12.7 0.0 0.091 11.9 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 Miro PF08477.8 gi|557693648|ref|YP_008796702.1| - 0.055 13.9 0.0 0.22 11.9 0.0 2.0 3 0 0 3 3 1 0 Miro-like protein AAA_14 PF13173.1 gi|557693648|ref|YP_008796702.1| - 0.062 13.2 0.0 0.13 12.2 0.0 1.6 1 0 0 1 1 1 0 AAA domain SbcCD_C PF13558.1 gi|557693648|ref|YP_008796702.1| - 0.098 12.5 0.0 0.35 10.8 0.0 2.0 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_10 PF12846.2 gi|557693648|ref|YP_008796702.1| - 0.14 11.6 0.1 0.57 9.5 0.0 1.9 2 0 0 2 2 2 0 AAA-like domain TOBE PF03459.12 gi|557693648|ref|YP_008796702.1| - 0.19 11.8 3.3 0.49 10.5 0.3 2.4 2 0 0 2 2 2 0 TOBE domain BPD_transp_1 PF00528.17 gi|557693649|ref|YP_008796703.1| - 3.8e-05 23.2 20.8 0.00014 21.4 14.4 2.2 1 1 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.17 gi|557693650|ref|YP_008796704.1| - 1.7e-16 60.2 18.1 1.7e-16 60.2 12.6 2.2 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component Kelch_1 PF01344.20 gi|557693651|ref|YP_008796705.1| - 8.4e-54 178.9 0.1 6.1e-11 41.6 0.0 6.2 6 0 0 6 6 6 6 Kelch motif Kelch_6 PF13964.1 gi|557693651|ref|YP_008796705.1| - 5.7e-38 127.5 0.1 3.2e-08 33.4 0.0 6.3 4 2 3 7 7 7 5 Kelch motif Kelch_3 PF13415.1 gi|557693651|ref|YP_008796705.1| - 5.6e-28 96.4 0.0 3.7e-05 23.7 0.0 5.8 5 0 0 5 5 5 5 Galactose oxidase, central domain Kelch_4 PF13418.1 gi|557693651|ref|YP_008796705.1| - 2.5e-24 84.7 0.0 2.2e-06 27.3 0.0 5.8 5 1 0 5 5 5 5 Galactose oxidase, central domain Kelch_2 PF07646.10 gi|557693651|ref|YP_008796705.1| - 2.9e-24 83.8 0.0 0.00026 20.6 0.0 6.1 6 0 0 6 6 6 4 Kelch motif Kelch_5 PF13854.1 gi|557693651|ref|YP_008796705.1| - 4.8e-15 55.1 2.1 0.011 15.6 0.0 6.6 7 0 0 7 7 7 4 Kelch motif PQQ_3 PF13570.1 gi|557693651|ref|YP_008796705.1| - 0.013 15.7 1.6 1.2 9.5 0.0 4.3 5 0 0 5 5 5 0 PQQ-like domain DUF1156 PF06634.7 gi|557693651|ref|YP_008796705.1| - 0.034 13.9 0.0 10 5.9 0.0 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF1156) DUF3239 PF11580.3 gi|557693651|ref|YP_008796705.1| - 0.085 12.8 2.0 2.7 8.0 0.0 3.1 4 0 0 4 4 4 0 Protein of unknown function (DUF3239) DUF1206 PF06724.6 gi|557693652|ref|YP_008796706.1| - 5.2 6.9 10.7 14 5.5 0.6 3.1 2 1 0 2 2 2 0 Domain of Unknown Function (DUF1206) DUF202 PF02656.10 gi|557693652|ref|YP_008796706.1| - 5.5 7.2 6.3 40 4.5 4.4 2.4 1 1 0 1 1 1 0 Domain of unknown function (DUF202) PQQ PF01011.16 gi|557693653|ref|YP_008796707.1| - 1.1e-24 84.6 22.9 1.3e-05 24.4 0.1 7.8 8 0 0 8 8 8 5 PQQ enzyme repeat PQQ_2 PF13360.1 gi|557693653|ref|YP_008796707.1| - 4.7e-18 65.5 4.1 1.5e-05 24.6 0.1 4.0 3 1 0 3 3 3 3 PQQ-like domain PQQ_3 PF13570.1 gi|557693653|ref|YP_008796707.1| - 6.6e-13 48.4 13.5 5.6e-05 23.2 0.3 7.6 7 0 0 7 7 7 2 PQQ-like domain SlyX PF04102.7 gi|557693653|ref|YP_008796707.1| - 1.2 9.5 3.7 2.9 8.3 2.6 1.5 1 0 0 1 1 1 0 SlyX adh_short PF00106.20 gi|557693654|ref|YP_008796708.1| - 6.8e-31 107.4 0.1 9.5e-31 106.9 0.1 1.2 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|557693654|ref|YP_008796708.1| - 1e-15 58.1 0.0 1.4e-15 57.7 0.0 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.5 gi|557693654|ref|YP_008796708.1| - 6.1e-11 42.3 0.1 8.6e-11 41.8 0.1 1.1 1 0 0 1 1 1 1 KR domain NAD_binding_10 PF13460.1 gi|557693654|ref|YP_008796708.1| - 2.8e-06 27.4 0.0 4.7e-06 26.7 0.0 1.4 1 1 0 1 1 1 1 NADH(P)-binding Eno-Rase_NADH_b PF12242.3 gi|557693654|ref|YP_008796708.1| - 2.3e-05 24.0 0.1 9.3e-05 22.1 0.1 1.9 2 0 0 2 2 2 1 NAD(P)H binding domain of trans-2-enoyl-CoA reductase Epimerase PF01370.16 gi|557693654|ref|YP_008796708.1| - 0.00056 19.4 0.0 0.0008 18.9 0.0 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family DUF1776 PF08643.5 gi|557693654|ref|YP_008796708.1| - 0.00083 18.5 0.0 0.0025 16.9 0.0 1.7 1 1 0 1 1 1 1 Fungal family of unknown function (DUF1776) Saccharop_dh PF03435.13 gi|557693654|ref|YP_008796708.1| - 0.0081 15.1 0.1 0.013 14.5 0.1 1.3 1 0 0 1 1 1 1 Saccharopine dehydrogenase Dicty_REP PF05086.7 gi|557693655|ref|YP_008796709.1| - 0.88 7.2 5.1 0.92 7.1 3.5 1.1 1 0 0 1 1 1 0 Dictyostelium (Slime Mold) REP protein Shisa PF13908.1 gi|557693655|ref|YP_008796709.1| - 1.1 9.3 7.1 1.3 9.2 4.0 1.6 2 0 0 2 2 2 0 Wnt and FGF inhibitory regulator COX2_TM PF02790.10 gi|557693657|ref|YP_008796711.1| - 4.5 7.2 6.7 5.5 7.0 3.1 2.2 2 0 0 2 2 2 0 Cytochrome C oxidase subunit II, transmembrane domain SBP_bac_1 PF01547.20 gi|557693658|ref|YP_008796712.1| - 5.6e-17 62.4 3.2 9.8e-17 61.6 2.2 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.1 gi|557693658|ref|YP_008796712.1| - 7.6e-12 45.5 0.2 2.6e-11 43.8 0.0 1.7 1 1 1 2 2 2 1 Bacterial extracellular solute-binding protein CytB6-F_Fe-S PF08802.5 gi|557693658|ref|YP_008796712.1| - 3.2 7.8 5.7 0.4 10.7 0.6 2.1 2 0 0 2 2 2 0 Cytochrome B6-F complex Fe-S subunit G5 PF07501.7 gi|557693659|ref|YP_008796713.1| - 0.051 13.5 0.0 0.11 12.4 0.0 1.5 1 0 0 1 1 1 0 G5 domain MFS_1 PF07690.11 gi|557693660|ref|YP_008796714.1| - 3.7e-40 137.7 38.7 3.7e-40 137.7 26.8 2.4 2 1 0 2 2 2 1 Major Facilitator Superfamily PUCC PF03209.10 gi|557693660|ref|YP_008796714.1| - 0.017 13.9 20.1 0.0053 15.5 4.9 2.4 2 0 0 2 2 2 0 PUCC protein OATP PF03137.15 gi|557693660|ref|YP_008796714.1| - 0.16 10.0 9.6 0.1 10.6 0.6 2.7 2 2 1 3 3 3 0 Organic Anion Transporter Polypeptide (OATP) family DUF423 PF04241.10 gi|557693660|ref|YP_008796714.1| - 0.4 10.6 8.7 1.5 8.7 0.6 3.8 3 0 0 3 3 3 0 Protein of unknown function (DUF423) PQQ_2 PF13360.1 gi|557693661|ref|YP_008796715.1| - 7e-26 91.1 0.4 2.4e-10 40.3 0.0 3.5 3 1 0 3 3 3 3 PQQ-like domain PQQ PF01011.16 gi|557693661|ref|YP_008796715.1| - 3.3e-24 83.1 6.4 0.00018 20.8 0.0 7.6 7 0 0 7 7 7 6 PQQ enzyme repeat PQQ_3 PF13570.1 gi|557693661|ref|YP_008796715.1| - 1.7e-20 72.5 10.2 3.3e-08 33.5 0.1 7.5 7 1 0 7 7 7 5 PQQ-like domain DUF4105 PF13387.1 gi|557693661|ref|YP_008796715.1| - 0.027 13.6 0.0 0.044 12.9 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4105) ABC_tran PF00005.22 gi|557693662|ref|YP_008796716.1| - 1e-28 100.3 0.0 2e-28 99.4 0.0 1.5 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|557693662|ref|YP_008796716.1| - 1.6e-13 51.2 1.0 8.7e-07 29.1 0.0 2.2 1 1 0 2 2 2 2 AAA domain AAA_15 PF13175.1 gi|557693662|ref|YP_008796716.1| - 0.00011 21.3 0.0 0.062 12.3 0.0 2.2 2 0 0 2 2 2 2 AAA ATPase domain AAA_23 PF13476.1 gi|557693662|ref|YP_008796716.1| - 0.00031 21.1 0.8 0.00059 20.2 0.6 1.8 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|557693662|ref|YP_008796716.1| - 0.0023 17.4 0.0 0.0049 16.3 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|557693662|ref|YP_008796716.1| - 0.0027 17.7 0.0 0.0058 16.6 0.0 1.6 1 0 0 1 1 1 1 AAA ATPase domain AAA_14 PF13173.1 gi|557693662|ref|YP_008796716.1| - 0.0082 16.0 0.0 0.09 12.6 0.0 2.5 3 0 0 3 3 3 1 AAA domain AAA PF00004.24 gi|557693662|ref|YP_008796716.1| - 0.013 15.6 0.2 0.1 12.7 0.1 2.4 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) IstB_IS21 PF01695.12 gi|557693662|ref|YP_008796716.1| - 0.02 14.3 0.1 0.23 10.8 0.0 2.4 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_10 PF12846.2 gi|557693662|ref|YP_008796716.1| - 0.029 13.8 0.5 0.17 11.3 0.1 2.0 1 1 1 2 2 2 0 AAA-like domain Arch_ATPase PF01637.13 gi|557693662|ref|YP_008796716.1| - 0.036 13.7 0.1 0.26 10.9 0.0 2.1 2 0 0 2 2 2 0 Archaeal ATPase AAA_22 PF13401.1 gi|557693662|ref|YP_008796716.1| - 0.05 13.7 1.2 0.22 11.6 0.4 2.6 2 1 0 2 2 2 0 AAA domain AAA_17 PF13207.1 gi|557693662|ref|YP_008796716.1| - 0.069 13.9 0.5 5.7 7.7 0.0 2.7 2 1 0 2 2 2 0 AAA domain AAA_19 PF13245.1 gi|557693662|ref|YP_008796716.1| - 0.078 12.7 0.2 0.22 11.3 0.1 1.8 1 0 0 1 1 1 0 Part of AAA domain DUF258 PF03193.11 gi|557693662|ref|YP_008796716.1| - 0.08 12.1 0.0 0.16 11.1 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function, DUF258 SMC_N PF02463.14 gi|557693662|ref|YP_008796716.1| - 0.14 11.3 0.4 0.66 9.1 0.0 2.1 2 1 1 3 3 3 0 RecF/RecN/SMC N terminal domain AAA_24 PF13479.1 gi|557693662|ref|YP_008796716.1| - 0.15 11.6 1.1 0.33 10.5 0.1 1.9 2 0 0 2 2 2 0 AAA domain ABC2_membrane_2 PF12679.2 gi|557693663|ref|YP_008796717.1| - 3.2e-19 68.8 29.6 8.2e-19 67.5 20.5 1.6 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|557693663|ref|YP_008796717.1| - 7.3e-13 48.2 37.3 7.3e-13 48.2 25.9 1.9 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.2 gi|557693663|ref|YP_008796717.1| - 1e-08 34.5 32.6 1e-08 34.5 22.6 1.5 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane PF01061.19 gi|557693663|ref|YP_008796717.1| - 0.00025 20.2 25.4 0.00025 20.2 17.6 1.9 2 1 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_5 PF13346.1 gi|557693663|ref|YP_008796717.1| - 8 5.6 33.2 0.32 10.2 18.0 2.2 2 1 0 2 2 2 0 ABC-2 family transporter protein PQQ_2 PF13360.1 gi|557693664|ref|YP_008796718.1| - 3.5e-19 69.2 0.0 9.5e-07 28.5 0.0 3.4 3 0 0 3 3 3 3 PQQ-like domain PQQ PF01011.16 gi|557693664|ref|YP_008796718.1| - 4.8e-19 66.8 0.5 2.1e-06 26.9 0.0 6.3 6 0 0 6 6 6 3 PQQ enzyme repeat PQQ_3 PF13570.1 gi|557693664|ref|YP_008796718.1| - 1e-06 28.7 6.8 0.011 16.0 0.4 5.4 5 0 0 5 5 5 3 PQQ-like domain Cupredoxin_1 PF13473.1 gi|557693665|ref|YP_008796719.1| - 7.5e-09 35.4 0.0 8.4e-09 35.2 0.0 1.1 1 0 0 1 1 1 1 Cupredoxin-like domain Copper-bind PF00127.15 gi|557693665|ref|YP_008796719.1| - 0.0012 19.0 0.0 0.02 15.1 0.0 2.2 1 1 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family Pox_VP8_L4R PF04498.7 gi|557693665|ref|YP_008796719.1| - 0.029 13.6 0.0 0.032 13.5 0.0 1.1 1 0 0 1 1 1 0 Poxvirus nucleic acid binding protein VP8/L4R EamA PF00892.15 gi|557693666|ref|YP_008796720.1| - 6.6e-15 55.2 19.0 8.2e-15 54.9 13.2 1.1 1 0 0 1 1 1 1 EamA-like transporter family EmrE PF13536.1 gi|557693666|ref|YP_008796720.1| - 1.2e-07 31.9 13.7 1.2e-07 31.9 9.5 2.0 1 1 1 2 2 2 1 Multidrug resistance efflux transporter UAA PF08449.6 gi|557693666|ref|YP_008796720.1| - 5.1e-05 22.3 6.5 7.4e-05 21.8 4.4 1.3 1 1 0 1 1 1 1 UAA transporter family UPF0546 PF10639.4 gi|557693666|ref|YP_008796720.1| - 0.012 15.4 5.3 0.019 14.7 3.7 1.6 1 1 0 1 1 1 0 Uncharacterised protein family UPF0546 TPT PF03151.11 gi|557693666|ref|YP_008796720.1| - 0.017 14.8 11.5 0.032 13.8 8.0 1.6 1 1 0 1 1 1 0 Triose-phosphate Transporter family Aldedh PF00171.17 gi|557693667|ref|YP_008796721.1| - 1.4e-123 412.6 0.5 1.6e-123 412.4 0.3 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family DUF162 PF02589.10 gi|557693667|ref|YP_008796721.1| - 0.052 13.0 0.0 0.17 11.3 0.0 1.9 1 0 0 1 1 1 0 Uncharacterised ACR, YkgG family COG1556 AA_synth PF06684.6 gi|557693668|ref|YP_008796722.1| - 3.2e-66 221.9 0.1 3.7e-66 221.8 0.0 1.0 1 0 0 1 1 1 1 Amino acid synthesis BPD_transp_2 PF02653.11 gi|557693669|ref|YP_008796723.1| - 1.4e-29 102.8 39.8 1.9e-29 102.4 27.6 1.1 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component BPD_transp_2 PF02653.11 gi|557693670|ref|YP_008796724.1| - 7.2e-31 107.1 47.5 9.6e-31 106.7 32.9 1.1 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component Cortexin PF11057.3 gi|557693670|ref|YP_008796724.1| - 4.2 7.0 6.5 0.79 9.3 1.2 2.3 2 0 0 2 2 2 0 Cortexin of kidney ABC_tran PF00005.22 gi|557693671|ref|YP_008796725.1| - 1.4e-33 116.1 0.1 2.1e-33 115.5 0.1 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|557693671|ref|YP_008796725.1| - 1.3e-12 48.3 0.4 1.3e-05 25.3 0.0 2.1 1 1 0 2 2 2 2 AAA domain AAA_19 PF13245.1 gi|557693671|ref|YP_008796725.1| - 1.7e-05 24.4 3.3 0.0048 16.6 1.0 2.8 2 1 0 2 2 2 1 Part of AAA domain AAA_16 PF13191.1 gi|557693671|ref|YP_008796725.1| - 0.00032 20.7 0.1 0.00051 20.0 0.1 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.1 gi|557693671|ref|YP_008796725.1| - 0.00037 19.9 0.1 0.00091 18.7 0.1 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_30 PF13604.1 gi|557693671|ref|YP_008796725.1| - 0.00057 19.5 1.1 0.0022 17.6 0.8 2.1 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.1 gi|557693671|ref|YP_008796725.1| - 0.00059 20.2 0.5 0.00084 19.7 0.3 1.6 1 1 0 1 1 1 1 AAA domain UPF0079 PF02367.12 gi|557693671|ref|YP_008796725.1| - 0.0016 18.0 0.2 0.0037 16.8 0.1 1.6 1 0 0 1 1 1 1 Uncharacterised P-loop hydrolase UPF0079 AAA_14 PF13173.1 gi|557693671|ref|YP_008796725.1| - 0.002 18.0 0.1 0.11 12.3 0.1 2.3 2 0 0 2 2 2 1 AAA domain Mg_chelatase PF01078.16 gi|557693671|ref|YP_008796725.1| - 0.0025 16.9 1.1 0.066 12.3 0.1 2.1 1 1 1 2 2 2 1 Magnesium chelatase, subunit ChlI ABC_ATPase PF09818.4 gi|557693671|ref|YP_008796725.1| - 0.003 16.1 0.7 0.5 8.8 0.2 2.1 2 0 0 2 2 2 1 Predicted ATPase of the ABC class cobW PF02492.14 gi|557693671|ref|YP_008796725.1| - 0.0031 16.9 0.2 0.069 12.5 0.2 2.1 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain AAA_25 PF13481.1 gi|557693671|ref|YP_008796725.1| - 0.0033 16.8 0.1 0.0069 15.8 0.0 1.5 2 0 0 2 2 1 1 AAA domain NACHT PF05729.7 gi|557693671|ref|YP_008796725.1| - 0.0038 16.8 0.4 0.0038 16.8 0.3 2.0 3 0 0 3 3 2 1 NACHT domain Arch_ATPase PF01637.13 gi|557693671|ref|YP_008796725.1| - 0.0042 16.8 0.2 0.0064 16.2 0.2 1.6 1 1 0 1 1 1 1 Archaeal ATPase MobB PF03205.9 gi|557693671|ref|YP_008796725.1| - 0.0046 16.6 0.0 0.0086 15.7 0.0 1.5 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B PIF1 PF05970.9 gi|557693671|ref|YP_008796725.1| - 0.0046 15.9 0.2 0.013 14.5 0.1 1.7 2 0 0 2 2 2 1 PIF1-like helicase SMC_N PF02463.14 gi|557693671|ref|YP_008796725.1| - 0.0049 16.1 1.2 0.13 11.5 0.8 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain SRP54 PF00448.17 gi|557693671|ref|YP_008796725.1| - 0.0051 16.2 1.1 0.01 15.2 0.8 1.5 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain DLIC PF05783.6 gi|557693671|ref|YP_008796725.1| - 0.0059 15.3 0.2 0.0091 14.7 0.1 1.2 1 0 0 1 1 1 1 Dynein light intermediate chain (DLIC) AAA_22 PF13401.1 gi|557693671|ref|YP_008796725.1| - 0.0073 16.4 1.7 0.096 12.8 0.2 2.1 2 0 0 2 2 2 1 AAA domain Zeta_toxin PF06414.7 gi|557693671|ref|YP_008796725.1| - 0.0097 15.0 0.1 0.75 8.8 0.1 2.1 2 0 0 2 2 2 1 Zeta toxin Rad17 PF03215.10 gi|557693671|ref|YP_008796725.1| - 0.012 14.3 0.0 0.1 11.2 0.0 1.9 2 0 0 2 2 2 0 Rad17 cell cycle checkpoint protein AAA_28 PF13521.1 gi|557693671|ref|YP_008796725.1| - 0.017 15.0 0.0 0.14 12.1 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_24 PF13479.1 gi|557693671|ref|YP_008796725.1| - 0.028 14.0 0.1 0.038 13.5 0.1 1.2 1 0 0 1 1 1 0 AAA domain SbcCD_C PF13558.1 gi|557693671|ref|YP_008796725.1| - 0.03 14.2 0.3 0.23 11.3 0.2 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_15 PF13175.1 gi|557693671|ref|YP_008796725.1| - 0.031 13.3 0.2 1.1 8.2 0.1 2.1 1 1 0 2 2 2 0 AAA ATPase domain T2SE PF00437.15 gi|557693671|ref|YP_008796725.1| - 0.031 13.1 0.2 0.056 12.3 0.1 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_10 PF12846.2 gi|557693671|ref|YP_008796725.1| - 0.035 13.5 0.5 0.085 12.2 0.1 1.7 2 0 0 2 2 2 0 AAA-like domain DUF258 PF03193.11 gi|557693671|ref|YP_008796725.1| - 0.042 13.0 0.1 0.076 12.1 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_33 PF13671.1 gi|557693671|ref|YP_008796725.1| - 0.043 13.6 0.2 0.078 12.8 0.1 1.6 1 1 0 1 1 1 0 AAA domain Miro PF08477.8 gi|557693671|ref|YP_008796725.1| - 0.077 13.4 0.0 0.15 12.5 0.0 1.5 1 0 0 1 1 1 0 Miro-like protein AAA_17 PF13207.1 gi|557693671|ref|YP_008796725.1| - 0.091 13.5 0.7 0.2 12.4 0.5 1.8 2 1 0 2 2 1 0 AAA domain AAA PF00004.24 gi|557693671|ref|YP_008796725.1| - 0.1 12.8 1.4 0.14 12.3 0.5 1.7 2 1 0 2 2 1 0 ATPase family associated with various cellular activities (AAA) NB-ARC PF00931.17 gi|557693671|ref|YP_008796725.1| - 0.13 11.0 0.7 0.22 10.3 0.1 1.6 2 0 0 2 2 2 0 NB-ARC domain P53_C PF11619.3 gi|557693671|ref|YP_008796725.1| - 0.15 11.8 0.0 0.41 10.4 0.0 1.7 1 0 0 1 1 1 0 Transcription factor P53 - C terminal domain NTPase_1 PF03266.10 gi|557693671|ref|YP_008796725.1| - 0.21 11.2 1.6 0.54 9.9 0.4 2.0 2 1 0 2 2 2 0 NTPase ABC_tran PF00005.22 gi|557693672|ref|YP_008796726.1| - 5.9e-26 91.3 0.0 1.1e-25 90.5 0.0 1.4 2 0 0 2 2 2 1 ABC transporter BCA_ABC_TP_C PF12399.3 gi|557693672|ref|YP_008796726.1| - 2.4e-08 33.4 0.3 5.5e-08 32.3 0.2 1.7 1 0 0 1 1 1 1 Branched-chain amino acid ATP-binding cassette transporter AAA_21 PF13304.1 gi|557693672|ref|YP_008796726.1| - 6.5e-06 26.3 0.0 0.00018 21.6 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|557693672|ref|YP_008796726.1| - 0.00014 21.9 0.1 0.39 10.8 0.0 2.1 2 0 0 2 2 2 2 AAA domain AAA_23 PF13476.1 gi|557693672|ref|YP_008796726.1| - 0.00017 22.0 1.0 0.00026 21.4 0.3 1.5 2 0 0 2 2 2 1 AAA domain ABC_ATPase PF09818.4 gi|557693672|ref|YP_008796726.1| - 0.0015 17.2 0.5 0.68 8.4 0.0 2.6 3 1 0 3 3 3 2 Predicted ATPase of the ABC class AAA_29 PF13555.1 gi|557693672|ref|YP_008796726.1| - 0.0029 17.1 0.0 0.0056 16.1 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain DUF258 PF03193.11 gi|557693672|ref|YP_008796726.1| - 0.0059 15.8 0.0 0.011 14.9 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_10 PF12846.2 gi|557693672|ref|YP_008796726.1| - 0.0096 15.3 0.2 2.5 7.4 0.0 2.1 2 0 0 2 2 2 2 AAA-like domain Arch_ATPase PF01637.13 gi|557693672|ref|YP_008796726.1| - 0.018 14.7 0.3 0.039 13.6 0.2 1.8 1 1 0 1 1 1 0 Archaeal ATPase SMC_N PF02463.14 gi|557693672|ref|YP_008796726.1| - 0.021 14.0 0.3 0.061 12.5 0.1 1.7 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_30 PF13604.1 gi|557693672|ref|YP_008796726.1| - 0.025 14.1 0.0 0.11 12.0 0.0 1.9 2 0 0 2 2 2 0 AAA domain PEPcase PF00311.12 gi|557693672|ref|YP_008796726.1| - 0.045 11.6 0.1 0.053 11.3 0.1 1.0 1 0 0 1 1 1 0 Phosphoenolpyruvate carboxylase IstB_IS21 PF01695.12 gi|557693672|ref|YP_008796726.1| - 0.051 12.9 0.1 7.5 5.9 0.0 2.3 2 0 0 2 2 2 0 IstB-like ATP binding protein Phage_tail_X PF05489.7 gi|557693672|ref|YP_008796726.1| - 0.11 12.0 0.0 0.25 10.8 0.0 1.6 1 0 0 1 1 1 0 Phage Tail Protein X MMR_HSR1 PF01926.18 gi|557693672|ref|YP_008796726.1| - 0.11 12.4 0.1 0.24 11.3 0.1 1.7 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_19 PF13245.1 gi|557693672|ref|YP_008796726.1| - 0.13 12.0 0.0 0.34 10.7 0.0 1.7 1 0 0 1 1 1 0 Part of AAA domain Peripla_BP_6 PF13458.1 gi|557693673|ref|YP_008796727.1| - 8.6e-59 199.5 0.5 1e-58 199.3 0.4 1.1 1 0 0 1 1 1 1 Periplasmic binding protein Peripla_BP_5 PF13433.1 gi|557693673|ref|YP_008796727.1| - 5.1e-27 94.5 0.0 6.6e-27 94.2 0.0 1.0 1 0 0 1 1 1 1 Periplasmic binding protein domain ANF_receptor PF01094.23 gi|557693673|ref|YP_008796727.1| - 4e-20 71.9 0.0 1.1e-19 70.4 0.0 1.6 1 1 0 1 1 1 1 Receptor family ligand binding region PrgI PF12666.2 gi|557693673|ref|YP_008796727.1| - 0.095 12.8 0.3 0.2 11.8 0.2 1.5 1 0 0 1 1 1 0 PrgI family protein SNN_transmemb PF09049.5 gi|557693673|ref|YP_008796727.1| - 0.74 9.5 0.0 0.74 9.5 0.0 2.4 2 0 0 2 2 2 0 Stannin transmembrane Bac_luciferase PF00296.15 gi|557693674|ref|YP_008796728.1| - 3.3e-57 193.9 0.0 2.4e-55 187.8 0.0 2.1 1 1 0 1 1 1 1 Luciferase-like monooxygenase Amidohydro_4 PF13147.1 gi|557693675|ref|YP_008796729.1| - 1.9e-11 44.5 1.4 6.5e-06 26.3 1.3 2.8 2 1 0 2 2 2 2 Amidohydrolase Amidohydro_5 PF13594.1 gi|557693675|ref|YP_008796729.1| - 3.2e-10 39.6 0.1 1.2e-09 37.8 0.1 2.1 1 1 0 1 1 1 1 Amidohydrolase Amidohydro_1 PF01979.15 gi|557693675|ref|YP_008796729.1| - 3.9e-08 33.3 0.9 1.4e-06 28.2 0.6 2.4 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.6 gi|557693675|ref|YP_008796729.1| - 1.4e-06 27.8 1.1 0.0063 15.7 0.0 3.1 2 1 0 2 2 2 2 Amidohydrolase family TatD_DNase PF01026.16 gi|557693675|ref|YP_008796729.1| - 2e-06 27.2 0.0 2.8e-06 26.7 0.0 1.2 1 0 0 1 1 1 1 TatD related DNase FAD_binding_4 PF01565.18 gi|557693675|ref|YP_008796729.1| - 0.0039 16.6 0.2 0.015 14.7 0.1 2.1 2 1 0 2 2 2 1 FAD binding domain MR_MLE_C PF13378.1 gi|557693675|ref|YP_008796729.1| - 0.045 13.7 0.1 0.12 12.3 0.1 1.8 1 1 0 1 1 1 0 Enolase C-terminal domain-like Ald_Xan_dh_C2 PF02738.13 gi|557693676|ref|YP_008796730.1| - 2.9e-136 454.9 0.0 4e-136 454.5 0.0 1.2 1 0 0 1 1 1 1 Molybdopterin-binding domain of aldehyde dehydrogenase Ald_Xan_dh_C PF01315.17 gi|557693676|ref|YP_008796730.1| - 4e-19 68.7 0.0 7.8e-19 67.8 0.0 1.5 1 0 0 1 1 1 1 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain SIMPL PF04402.9 gi|557693677|ref|YP_008796731.1| - 4e-42 144.4 3.1 5.1e-42 144.1 2.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF541) RII_binding_1 PF10522.4 gi|557693677|ref|YP_008796731.1| - 0.62 10.4 3.1 0.86 9.9 0.0 2.9 3 0 0 3 3 3 0 RII binding domain EamA PF00892.15 gi|557693678|ref|YP_008796732.1| - 2.2e-29 102.0 37.0 2.6e-17 63.0 9.0 2.1 2 0 0 2 2 2 2 EamA-like transporter family OCD_Mu_crystall PF02423.10 gi|557693679|ref|YP_008796733.1| - 4.8e-76 255.5 0.2 5.9e-76 255.2 0.1 1.0 1 0 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family F420_oxidored PF03807.12 gi|557693679|ref|YP_008796733.1| - 0.001 19.4 0.0 0.0029 17.9 0.0 1.8 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent Shikimate_DH PF01488.15 gi|557693679|ref|YP_008796733.1| - 0.0017 18.4 0.0 0.0036 17.3 0.0 1.5 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase GFO_IDH_MocA PF01408.17 gi|557693679|ref|YP_008796733.1| - 0.016 15.7 0.0 0.029 14.9 0.0 1.4 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold DUF4462 PF14692.1 gi|557693679|ref|YP_008796733.1| - 0.086 12.1 0.0 0.15 11.3 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4462) Peptidase_S8 PF00082.17 gi|557693680|ref|YP_008796734.1| - 7.8e-46 156.4 1.9 7.2e-26 90.9 0.5 2.5 2 1 0 3 3 3 2 Subtilase family Pribosyltran PF00156.22 gi|557693681|ref|YP_008796735.1| - 1e-10 41.4 0.1 1.4e-10 41.0 0.1 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase domain MFS_1 PF07690.11 gi|557693682|ref|YP_008796736.1| - 1.9e-25 89.3 50.9 2.5e-25 88.9 29.1 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.2 gi|557693682|ref|YP_008796736.1| - 0.086 12.6 0.2 0.086 12.6 0.1 2.8 2 0 0 2 2 2 0 MFS_1 like family Acyl-CoA_dh_1 PF00441.19 gi|557693683|ref|YP_008796737.1| - 4.7e-36 124.1 0.2 6.5e-36 123.6 0.1 1.2 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_M PF02770.14 gi|557693683|ref|YP_008796737.1| - 1.8e-17 62.5 0.1 3.8e-17 61.5 0.0 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.6 gi|557693683|ref|YP_008796737.1| - 3.8e-15 56.3 0.1 5.6e-15 55.7 0.1 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.11 gi|557693683|ref|YP_008796737.1| - 1.6e-12 48.0 0.0 3.6e-12 46.8 0.0 1.6 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain Nterm_IS4 PF13006.2 gi|557693683|ref|YP_008796737.1| - 0.13 12.3 0.0 0.33 11.0 0.0 1.7 1 0 0 1 1 1 0 Insertion element 4 transposase N-terminal OCD_Mu_crystall PF02423.10 gi|557693684|ref|YP_008796738.1| - 3.2e-61 206.8 0.3 3.6e-61 206.6 0.2 1.0 1 0 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family Shikimate_DH PF01488.15 gi|557693684|ref|YP_008796738.1| - 3.2e-07 30.5 0.0 6.8e-07 29.4 0.0 1.6 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase Semialdhyde_dh PF01118.19 gi|557693684|ref|YP_008796738.1| - 0.012 15.9 0.0 0.039 14.2 0.0 1.9 1 1 1 2 2 2 0 Semialdehyde dehydrogenase, NAD binding domain F420_oxidored PF03807.12 gi|557693684|ref|YP_008796738.1| - 0.026 14.9 0.1 0.076 13.4 0.1 1.8 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent NAD_binding_7 PF13241.1 gi|557693684|ref|YP_008796738.1| - 0.034 14.4 0.0 0.082 13.1 0.0 1.6 1 0 0 1 1 1 0 Putative NAD(P)-binding Pentapeptide PF00805.17 gi|557693684|ref|YP_008796738.1| - 0.054 12.7 0.1 0.096 11.9 0.0 1.4 1 0 0 1 1 1 0 Pentapeptide repeats (8 copies) AMP-binding_C_2 PF14535.1 gi|557693685|ref|YP_008796739.1| - 4.5e-24 84.3 0.1 7.6e-24 83.5 0.0 1.4 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain AMP-binding PF00501.23 gi|557693685|ref|YP_008796739.1| - 1.7e-17 62.9 0.6 4.1e-17 61.6 0.4 1.5 1 1 0 1 1 1 1 AMP-binding enzyme LuxE PF04443.7 gi|557693685|ref|YP_008796739.1| - 0.00018 20.2 0.0 0.14 10.8 0.0 2.1 2 0 0 2 2 2 2 Acyl-protein synthetase, LuxE FAA_hydrolase PF01557.13 gi|557693686|ref|YP_008796740.1| - 1e-61 208.1 0.0 1.3e-61 207.8 0.0 1.1 1 0 0 1 1 1 1 Fumarylacetoacetate (FAA) hydrolase family HMGL-like PF00682.14 gi|557693687|ref|YP_008796741.1| - 1.4e-56 191.8 0.1 2e-56 191.3 0.1 1.2 1 0 0 1 1 1 1 HMGL-like RelB PF04221.7 gi|557693687|ref|YP_008796741.1| - 0.0026 17.4 0.0 0.0084 15.8 0.0 1.9 2 0 0 2 2 2 1 RelB antitoxin E1_dh PF00676.15 gi|557693688|ref|YP_008796742.1| - 3.8e-86 288.5 0.0 4.5e-86 288.2 0.0 1.0 1 0 0 1 1 1 1 Dehydrogenase E1 component DXP_synthase_N PF13292.1 gi|557693688|ref|YP_008796742.1| - 1.4e-06 27.4 0.0 2.4e-06 26.7 0.0 1.3 1 0 0 1 1 1 1 1-deoxy-D-xylulose-5-phosphate synthase TPP_enzyme_C PF02775.16 gi|557693688|ref|YP_008796742.1| - 4.7e-05 23.0 0.5 0.00044 19.8 0.3 2.1 1 1 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Transketolase_N PF00456.16 gi|557693688|ref|YP_008796742.1| - 0.0054 15.5 0.0 0.0075 15.1 0.0 1.2 1 0 0 1 1 1 1 Transketolase, thiamine diphosphate binding domain ParBc PF02195.13 gi|557693689|ref|YP_008796743.1| - 3.7e-10 39.7 0.0 7.5e-10 38.7 0.0 1.5 1 0 0 1 1 1 1 ParB-like nuclease domain DUF1015 PF06245.6 gi|557693689|ref|YP_008796743.1| - 1.4e-07 30.3 0.0 2.9e-06 26.0 0.0 2.1 2 0 0 2 2 2 2 Protein of unknown function (DUF1015) 2-Hacid_dh_C PF02826.14 gi|557693690|ref|YP_008796744.1| - 3.9e-70 234.6 0.1 5.5e-70 234.1 0.0 1.2 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.25 gi|557693690|ref|YP_008796744.1| - 1.2e-31 108.9 0.3 1.4e-31 108.7 0.2 1.0 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NAD_binding_2 PF03446.10 gi|557693690|ref|YP_008796744.1| - 3.8e-10 39.8 0.5 1.5e-09 37.8 0.1 2.0 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase AdoHcyase_NAD PF00670.16 gi|557693690|ref|YP_008796744.1| - 5.1e-10 39.4 0.2 9.4e-10 38.5 0.1 1.4 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain IlvN PF07991.7 gi|557693690|ref|YP_008796744.1| - 7.9e-05 22.0 0.1 0.0002 20.8 0.0 1.7 2 0 0 2 2 2 1 Acetohydroxy acid isomeroreductase, catalytic domain 3HCDH_N PF02737.13 gi|557693690|ref|YP_008796744.1| - 0.0001 22.0 0.9 0.00037 20.1 0.2 2.1 1 1 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain F420_oxidored PF03807.12 gi|557693690|ref|YP_008796744.1| - 0.0043 17.4 0.1 0.02 15.3 0.1 2.2 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent ELFV_dehydrog PF00208.16 gi|557693690|ref|YP_008796744.1| - 0.0094 15.5 0.1 0.017 14.7 0.1 1.3 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase F420_ligase PF01996.11 gi|557693690|ref|YP_008796744.1| - 0.0097 14.9 0.1 0.017 14.2 0.0 1.4 1 0 0 1 1 1 1 F420-0:Gamma-glutamyl ligase XdhC_C PF13478.1 gi|557693690|ref|YP_008796744.1| - 0.0098 16.2 0.0 0.028 14.7 0.0 1.8 1 0 0 1 1 1 1 XdhC Rossmann domain Gp_dh_N PF00044.19 gi|557693690|ref|YP_008796744.1| - 0.017 15.1 0.0 0.042 13.7 0.0 1.8 2 0 0 2 2 2 0 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Oxidored_nitro PF00148.14 gi|557693690|ref|YP_008796744.1| - 0.037 12.6 0.1 0.23 10.0 0.1 2.0 2 0 0 2 2 2 0 Nitrogenase component 1 type Oxidoreductase TrkA_N PF02254.13 gi|557693690|ref|YP_008796744.1| - 0.04 13.9 1.2 0.15 12.0 0.1 2.5 3 0 0 3 3 3 0 TrkA-N domain AlaDh_PNT_C PF01262.16 gi|557693690|ref|YP_008796744.1| - 0.07 12.6 1.6 0.62 9.6 1.1 2.2 1 1 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Ribosomal_S26e PF01283.14 gi|557693691|ref|YP_008796745.1| - 2.7e-25 88.8 1.7 2.9e-25 88.7 1.2 1.0 1 0 0 1 1 1 1 Ribosomal protein S26e zf-dskA_traR PF01258.12 gi|557693691|ref|YP_008796745.1| - 0.0094 15.6 0.6 0.57 9.9 0.0 2.3 2 0 0 2 2 2 2 Prokaryotic dksA/traR C4-type zinc finger Peptidase_M48 PF01435.13 gi|557693692|ref|YP_008796746.1| - 1.5e-40 139.1 0.0 1.9e-40 138.8 0.0 1.1 1 0 0 1 1 1 1 Peptidase family M48 Peptidase_M56 PF05569.6 gi|557693692|ref|YP_008796746.1| - 0.00011 21.3 0.2 0.00023 20.2 0.0 1.6 2 0 0 2 2 2 1 BlaR1 peptidase M56 DUF3040 PF11239.3 gi|557693692|ref|YP_008796746.1| - 9.6 6.3 8.4 13 5.9 2.3 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF3040) HGTP_anticodon PF03129.15 gi|557693693|ref|YP_008796747.1| - 7.7e-18 64.2 0.3 2.2e-17 62.7 0.2 1.8 1 0 0 1 1 1 1 Anticodon binding domain tRNA-synt_2b PF00587.20 gi|557693693|ref|YP_008796747.1| - 1.4e-17 63.8 0.1 2.7e-17 62.9 0.0 1.5 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) ProRS-C_1 PF09180.6 gi|557693693|ref|YP_008796747.1| - 8.6e-15 54.4 0.2 1.9e-14 53.3 0.1 1.6 1 0 0 1 1 1 1 Prolyl-tRNA synthetase, C-terminal DUF4258 PF14076.1 gi|557693694|ref|YP_008796748.1| - 0.00057 19.8 0.7 0.0012 18.8 0.5 1.6 1 1 0 1 1 1 1 Domain of unknown function (DUF4258) GSAP-16 PF14959.1 gi|557693694|ref|YP_008796748.1| - 0.046 13.4 0.0 0.062 13.0 0.0 1.2 1 0 0 1 1 1 0 gamma-Secretase-activating protein C-term DUF2283 PF10049.4 gi|557693695|ref|YP_008796749.1| - 1.2e-17 63.4 2.8 1.8e-17 62.8 1.9 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF2283) ATP-synt_D PF01813.12 gi|557693696|ref|YP_008796750.1| - 7.9e-56 188.7 9.3 9e-56 188.5 6.5 1.0 1 0 0 1 1 1 1 ATP synthase subunit D SOUL PF04832.7 gi|557693696|ref|YP_008796750.1| - 0.036 13.6 0.0 0.054 13.0 0.0 1.3 1 0 0 1 1 1 0 SOUL heme-binding protein Atg14 PF10186.4 gi|557693696|ref|YP_008796750.1| - 0.27 10.1 3.0 3.4 6.5 0.8 2.1 2 0 0 2 2 2 0 UV radiation resistance protein and autophagy-related subunit 14 Polysacc_synt_C PF14667.1 gi|557693697|ref|YP_008796751.1| - 0.064 13.0 11.0 0.024 14.4 2.1 2.4 2 1 0 2 2 2 0 Polysaccharide biosynthesis C-terminal domain Asp_protease_2 PF13650.1 gi|557693698|ref|YP_008796752.1| - 1.3e-06 28.7 0.1 1.7e-06 28.3 0.1 1.2 1 0 0 1 1 1 1 Aspartyl protease RVP PF00077.15 gi|557693698|ref|YP_008796752.1| - 3e-05 23.8 0.0 3.8e-05 23.5 0.0 1.1 1 0 0 1 1 1 1 Retroviral aspartyl protease gag-asp_proteas PF13975.1 gi|557693698|ref|YP_008796752.1| - 0.0016 18.2 0.0 0.0027 17.4 0.0 1.4 1 0 0 1 1 1 1 gag-polyprotein putative aspartyl protease HEPN PF05168.9 gi|557693699|ref|YP_008796753.1| - 5.7e-28 97.1 0.1 6.7e-28 96.9 0.1 1.0 1 0 0 1 1 1 1 HEPN domain Vps52 PF04129.7 gi|557693699|ref|YP_008796753.1| - 0.14 10.6 0.0 0.15 10.5 0.0 1.1 1 0 0 1 1 1 0 Vps52 / Sac2 family NTP_transf_2 PF01909.18 gi|557693700|ref|YP_008796754.1| - 2.3e-07 31.0 0.2 3e-07 30.6 0.2 1.3 1 0 0 1 1 1 1 Nucleotidyltransferase domain DUF294 PF03445.8 gi|557693700|ref|YP_008796754.1| - 0.005 16.4 0.0 0.0083 15.7 0.0 1.4 1 0 0 1 1 1 1 Putative nucleotidyltransferase DUF294 PMBR PF09373.5 gi|557693700|ref|YP_008796754.1| - 0.02 14.8 0.1 0.065 13.2 0.0 1.9 2 0 0 2 2 2 0 Pseudomurein-binding repeat NTP_transferase PF00483.18 gi|557693701|ref|YP_008796755.1| - 2e-26 92.7 0.0 4.1e-26 91.7 0.0 1.4 1 1 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.2 gi|557693701|ref|YP_008796755.1| - 3.1e-08 33.8 0.0 6e-08 32.9 0.0 1.4 1 1 0 1 1 1 1 MobA-like NTP transferase domain CABIT PF12736.2 gi|557693701|ref|YP_008796755.1| - 0.065 12.2 0.0 0.1 11.6 0.0 1.3 1 0 0 1 1 1 0 Cell-cycle sustaining, positive selection, UDPG_MGDP_dh_N PF03721.9 gi|557693702|ref|YP_008796756.1| - 2.2e-57 193.4 0.0 5.2e-57 192.2 0.0 1.6 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain UDPG_MGDP_dh PF00984.14 gi|557693702|ref|YP_008796756.1| - 8e-34 115.7 0.0 1.4e-33 114.9 0.0 1.4 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, central domain UDPG_MGDP_dh_C PF03720.10 gi|557693702|ref|YP_008796756.1| - 6.1e-32 109.9 0.0 1.4e-31 108.7 0.0 1.6 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain NAD_binding_2 PF03446.10 gi|557693702|ref|YP_008796756.1| - 1.8e-08 34.3 0.0 4.4e-05 23.3 0.0 2.6 2 0 0 2 2 2 2 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_Gly3P_dh_N PF01210.18 gi|557693702|ref|YP_008796756.1| - 3.1e-08 33.5 0.0 1.3e-06 28.2 0.0 2.9 3 0 0 3 3 3 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 3HCDH_N PF02737.13 gi|557693702|ref|YP_008796756.1| - 1.5e-07 31.2 0.0 1.4e-06 28.0 0.0 2.3 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain F420_oxidored PF03807.12 gi|557693702|ref|YP_008796756.1| - 4e-06 27.1 0.0 0.0098 16.3 0.0 3.3 3 0 0 3 3 3 1 NADP oxidoreductase coenzyme F420-dependent 2-Hacid_dh_C PF02826.14 gi|557693702|ref|YP_008796756.1| - 8.5e-06 25.0 0.1 0.0041 16.2 0.0 2.5 2 1 0 2 2 2 2 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ApbA PF02558.11 gi|557693702|ref|YP_008796756.1| - 7e-05 22.3 0.0 0.00019 20.9 0.0 1.7 2 0 0 2 2 2 1 Ketopantoate reductase PanE/ApbA DAO PF01266.19 gi|557693702|ref|YP_008796756.1| - 8.2e-05 21.6 0.6 0.00015 20.7 0.4 1.4 1 0 0 1 1 1 1 FAD dependent oxidoreductase NAD_binding_7 PF13241.1 gi|557693702|ref|YP_008796756.1| - 0.0001 22.4 0.1 1.5 9.0 0.0 3.2 3 0 0 3 3 3 2 Putative NAD(P)-binding TrkA_N PF02254.13 gi|557693702|ref|YP_008796756.1| - 0.00022 21.2 0.1 0.0076 16.2 0.0 2.6 2 0 0 2 2 2 1 TrkA-N domain Ldh_1_N PF00056.18 gi|557693702|ref|YP_008796756.1| - 0.0059 16.4 0.1 0.05 13.4 0.0 2.4 2 1 0 2 2 2 1 lactate/malate dehydrogenase, NAD binding domain AlaDh_PNT_C PF01262.16 gi|557693702|ref|YP_008796756.1| - 0.0064 16.0 0.0 0.025 14.1 0.0 2.1 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain Pyr_redox PF00070.22 gi|557693702|ref|YP_008796756.1| - 0.0086 16.4 0.3 0.048 14.0 0.2 2.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Methyltransf_23 PF13489.1 gi|557693702|ref|YP_008796756.1| - 0.018 14.7 0.0 0.12 12.0 0.0 2.2 2 0 0 2 2 2 0 Methyltransferase domain FAD_binding_3 PF01494.14 gi|557693702|ref|YP_008796756.1| - 0.075 12.0 0.0 0.11 11.5 0.0 1.3 1 0 0 1 1 1 0 FAD binding domain NAD_binding_10 PF13460.1 gi|557693702|ref|YP_008796756.1| - 0.081 12.9 0.5 1.3 8.9 0.2 2.6 2 1 0 2 2 2 0 NADH(P)-binding Pyr_redox_2 PF07992.9 gi|557693702|ref|YP_008796756.1| - 0.12 12.2 0.0 0.51 10.1 0.0 2.0 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.1 gi|557693702|ref|YP_008796756.1| - 0.14 12.2 0.2 0.36 10.8 0.2 1.7 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain Glycos_transf_1 PF00534.15 gi|557693703|ref|YP_008796757.1| - 1.2e-40 138.7 0.0 1.6e-40 138.2 0.0 1.1 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|557693703|ref|YP_008796757.1| - 2.9e-19 69.5 0.1 5.1e-19 68.7 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|557693703|ref|YP_008796757.1| - 5.1e-14 52.3 0.0 8.8e-14 51.5 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glycos_transf_1 PF00534.15 gi|557693704|ref|YP_008796758.1| - 3.5e-16 59.1 0.0 5.6e-16 58.4 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.1 gi|557693704|ref|YP_008796758.1| - 0.00054 19.7 0.0 0.0016 18.2 0.0 1.8 1 1 0 1 1 1 1 Glycosyl transferase 4-like Glyco_trans_4_4 PF13579.1 gi|557693704|ref|YP_008796758.1| - 0.00076 19.6 0.5 0.0016 18.6 0.1 1.7 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.1 gi|557693704|ref|YP_008796758.1| - 0.0077 15.9 0.0 0.013 15.2 0.0 1.4 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Epimerase PF01370.16 gi|557693705|ref|YP_008796759.1| - 1.7e-21 76.7 0.1 2.1e-21 76.4 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|557693705|ref|YP_008796759.1| - 2.5e-13 49.3 0.2 3.3e-13 48.9 0.1 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.12 gi|557693705|ref|YP_008796759.1| - 6e-10 38.4 0.0 1.1e-09 37.6 0.0 1.3 1 1 0 1 1 1 1 RmlD substrate binding domain NAD_binding_10 PF13460.1 gi|557693705|ref|YP_008796759.1| - 4.9e-08 33.1 0.2 8.5e-08 32.4 0.1 1.5 1 0 0 1 1 1 1 NADH(P)-binding Polysacc_synt_2 PF02719.10 gi|557693705|ref|YP_008796759.1| - 3.8e-06 26.0 2.2 0.03 13.2 0.3 2.7 2 1 0 2 2 2 2 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.7 gi|557693705|ref|YP_008796759.1| - 3.8e-06 26.0 0.1 0.00011 21.1 0.0 2.1 2 0 0 2 2 2 1 Male sterility protein adh_short PF00106.20 gi|557693705|ref|YP_008796759.1| - 0.0052 16.7 1.9 0.038 13.9 1.3 2.3 1 1 0 1 1 1 1 short chain dehydrogenase Saccharop_dh PF03435.13 gi|557693705|ref|YP_008796759.1| - 0.0085 15.1 0.8 0.012 14.5 0.6 1.2 1 0 0 1 1 1 1 Saccharopine dehydrogenase NmrA PF05368.8 gi|557693705|ref|YP_008796759.1| - 0.016 14.4 0.3 0.034 13.3 0.2 1.6 1 1 0 1 1 1 0 NmrA-like family Pyr_redox PF00070.22 gi|557693705|ref|YP_008796759.1| - 0.049 14.0 0.6 0.54 10.6 0.4 2.5 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase DUF1820 PF08850.6 gi|557693705|ref|YP_008796759.1| - 0.089 12.9 0.0 0.24 11.5 0.0 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF1820) 3HCDH_N PF02737.13 gi|557693705|ref|YP_008796759.1| - 0.14 11.8 0.2 0.26 10.8 0.1 1.6 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Methyltransf_11 PF08241.7 gi|557693706|ref|YP_008796760.1| - 5.6e-10 39.5 0.0 7.7e-10 39.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|557693706|ref|YP_008796760.1| - 3.7e-09 36.4 0.0 9.2e-09 35.2 0.0 1.6 1 1 1 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|557693706|ref|YP_008796760.1| - 4.7e-06 26.2 0.0 5.9e-06 25.9 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|557693706|ref|YP_008796760.1| - 5.9e-05 23.4 0.0 8.2e-05 23.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|557693706|ref|YP_008796760.1| - 0.00063 20.0 0.0 0.00099 19.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|557693706|ref|YP_008796760.1| - 0.015 15.9 0.0 0.021 15.4 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain CMAS PF02353.15 gi|557693706|ref|YP_008796760.1| - 0.022 13.8 0.0 0.031 13.3 0.0 1.2 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase Methyltransf_9 PF08003.6 gi|557693706|ref|YP_008796760.1| - 0.05 12.3 0.0 0.059 12.0 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1698) Methyltransf_29 PF03141.11 gi|557693706|ref|YP_008796760.1| - 0.073 11.4 0.0 0.22 9.7 0.0 1.6 1 1 0 1 1 1 0 Putative S-adenosyl-L-methionine-dependent methyltransferase Polysacc_synt_3 PF13440.1 gi|557693707|ref|YP_008796761.1| - 1.6e-07 31.1 25.2 1.6e-07 31.1 17.5 3.5 1 1 1 2 2 2 1 Polysaccharide biosynthesis protein Glyco_trans_1_4 PF13692.1 gi|557693708|ref|YP_008796762.1| - 1.5e-18 67.2 0.0 2.2e-18 66.7 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glycos_transf_1 PF00534.15 gi|557693708|ref|YP_008796762.1| - 1.5e-17 63.5 0.0 2.2e-17 63.0 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|557693708|ref|YP_008796762.1| - 1e-09 38.5 0.0 1.7e-09 37.8 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|557693708|ref|YP_008796762.1| - 3.2e-08 33.5 0.0 5.3e-08 32.7 0.0 1.4 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.1 gi|557693708|ref|YP_008796762.1| - 0.00022 21.3 0.1 0.0007 19.7 0.0 1.8 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glycos_transf_1 PF00534.15 gi|557693709|ref|YP_008796763.1| - 2.4e-47 160.5 0.1 3.5e-47 160.0 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|557693709|ref|YP_008796763.1| - 4.1e-19 69.0 0.0 6.3e-19 68.4 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|557693709|ref|YP_008796763.1| - 2.3e-10 40.8 0.0 4e-10 40.0 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.1 gi|557693709|ref|YP_008796763.1| - 5.1e-10 39.5 0.0 1.2e-09 38.3 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|557693709|ref|YP_008796763.1| - 7e-09 35.6 0.0 1.1e-08 35.0 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_2 PF13477.1 gi|557693709|ref|YP_008796763.1| - 5.4e-08 32.7 0.0 1.2e-07 31.6 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glycogen_syn PF05693.8 gi|557693709|ref|YP_008796763.1| - 0.016 13.4 0.0 0.022 13.0 0.0 1.2 1 0 0 1 1 1 0 Glycogen synthase Epimerase PF01370.16 gi|557693710|ref|YP_008796764.1| - 8.7e-53 179.1 0.0 1.1e-52 178.8 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family Polysacc_synt_2 PF02719.10 gi|557693710|ref|YP_008796764.1| - 1.1e-18 67.2 0.0 9.6e-18 64.0 0.0 2.0 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein RmlD_sub_bind PF04321.12 gi|557693710|ref|YP_008796764.1| - 1.6e-16 60.0 0.0 2.2e-16 59.5 0.0 1.2 1 0 0 1 1 1 1 RmlD substrate binding domain NAD_binding_4 PF07993.7 gi|557693710|ref|YP_008796764.1| - 8.9e-14 51.0 0.0 2.3e-13 49.6 0.0 1.6 1 1 0 1 1 1 1 Male sterility protein 3Beta_HSD PF01073.14 gi|557693710|ref|YP_008796764.1| - 1.1e-12 47.2 0.0 1.6e-12 46.7 0.0 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_10 PF13460.1 gi|557693710|ref|YP_008796764.1| - 5.8e-09 36.2 0.0 1.3e-08 35.0 0.0 1.6 1 0 0 1 1 1 1 NADH(P)-binding adh_short PF00106.20 gi|557693710|ref|YP_008796764.1| - 1.1e-06 28.6 0.0 2e-06 27.8 0.0 1.4 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.5 gi|557693710|ref|YP_008796764.1| - 7.5e-05 22.4 0.0 0.00013 21.6 0.0 1.4 1 0 0 1 1 1 1 KR domain Epimerase_Csub PF13950.1 gi|557693710|ref|YP_008796764.1| - 0.00014 21.7 0.0 0.00027 20.8 0.0 1.4 1 0 0 1 1 1 1 UDP-glucose 4-epimerase C-term subunit HEPN PF05168.9 gi|557693711|ref|YP_008796765.1| - 1.3e-05 25.0 0.0 1.4e-05 24.9 0.0 1.1 1 0 0 1 1 1 1 HEPN domain NTP_transf_2 PF01909.18 gi|557693712|ref|YP_008796766.1| - 2.3e-10 40.6 0.1 3.1e-10 40.2 0.0 1.5 1 1 0 1 1 1 1 Nucleotidyltransferase domain DUF294 PF03445.8 gi|557693712|ref|YP_008796766.1| - 0.00011 21.7 0.0 0.00026 20.6 0.0 1.5 2 0 0 2 2 2 1 Putative nucleotidyltransferase DUF294 GlnE PF03710.10 gi|557693712|ref|YP_008796766.1| - 0.095 11.9 0.0 0.15 11.3 0.0 1.3 1 0 0 1 1 1 0 Glutamate-ammonia ligase adenylyltransferase Ribosomal_S30 PF04758.9 gi|557693713|ref|YP_008796767.1| - 1.9e-11 43.5 0.7 2.2e-11 43.2 0.5 1.1 1 0 0 1 1 1 1 Ribosomal protein S30 Big_3_2 PF12245.3 gi|557693715|ref|YP_008796769.1| - 0.081 12.4 0.0 0.18 11.4 0.0 1.6 1 0 0 1 1 1 0 Bacterial Ig-like domain (group 3) SWM_repeat PF13753.1 gi|557693715|ref|YP_008796769.1| - 0.11 11.5 0.0 0.14 11.2 0.0 1.2 1 0 0 1 1 1 0 Putative flagellar system-associated repeat Nop PF01798.13 gi|557693717|ref|YP_008796771.1| - 2.6e-49 166.3 0.5 9.8e-49 164.4 0.2 1.9 2 0 0 2 2 2 1 Putative snoRNA binding domain NOSIC PF08060.8 gi|557693717|ref|YP_008796771.1| - 3e-16 58.9 0.1 6.9e-16 57.7 0.0 1.6 1 0 0 1 1 1 1 NOSIC (NUC001) domain UPF0150 PF03681.10 gi|557693717|ref|YP_008796771.1| - 0.0098 15.5 0.4 0.11 12.2 0.0 2.5 3 0 0 3 3 3 1 Uncharacterised protein family (UPF0150) Fibrillarin PF01269.12 gi|557693718|ref|YP_008796772.1| - 1.1e-88 296.0 0.0 1.2e-88 295.9 0.0 1.0 1 0 0 1 1 1 1 Fibrillarin PCMT PF01135.14 gi|557693718|ref|YP_008796772.1| - 0.00034 20.2 0.0 0.00043 19.8 0.0 1.3 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) GCD14 PF08704.5 gi|557693718|ref|YP_008796772.1| - 0.00099 18.6 0.0 0.0012 18.3 0.0 1.1 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit Methyltransf_31 PF13847.1 gi|557693718|ref|YP_008796772.1| - 0.0056 16.2 0.0 0.007 15.9 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain FtsJ PF01728.14 gi|557693718|ref|YP_008796772.1| - 0.022 14.7 0.0 0.029 14.3 0.0 1.2 1 0 0 1 1 1 0 FtsJ-like methyltransferase RNase_HII PF01351.13 gi|557693719|ref|YP_008796773.1| - 1.5e-35 122.6 0.0 1.9e-35 122.3 0.0 1.1 1 0 0 1 1 1 1 Ribonuclease HII NTPase_1 PF03266.10 gi|557693720|ref|YP_008796774.1| - 6.3e-51 172.4 0.1 7.1e-51 172.2 0.1 1.0 1 0 0 1 1 1 1 NTPase DUF2478 PF10649.4 gi|557693720|ref|YP_008796774.1| - 0.002 17.4 0.0 0.0036 16.6 0.0 1.4 1 1 0 1 1 1 1 Protein of unknown function (DUF2478) AAA_30 PF13604.1 gi|557693720|ref|YP_008796774.1| - 0.003 17.1 0.1 0.0038 16.8 0.1 1.5 1 1 0 1 1 1 1 AAA domain ArgK PF03308.11 gi|557693720|ref|YP_008796774.1| - 0.0061 15.3 1.0 0.0095 14.7 0.2 1.6 2 0 0 2 2 2 1 ArgK protein AAA_16 PF13191.1 gi|557693720|ref|YP_008796774.1| - 0.016 15.2 0.0 0.33 10.8 0.0 2.2 1 1 0 2 2 2 0 AAA ATPase domain AAA_22 PF13401.1 gi|557693720|ref|YP_008796774.1| - 0.026 14.6 0.1 0.16 12.1 0.1 2.3 1 1 0 1 1 1 0 AAA domain VirC1 PF07015.6 gi|557693720|ref|YP_008796774.1| - 0.031 13.3 0.0 0.058 12.4 0.0 1.4 1 0 0 1 1 1 0 VirC1 protein NACHT PF05729.7 gi|557693720|ref|YP_008796774.1| - 0.039 13.6 0.1 0.057 13.0 0.0 1.8 1 1 0 1 1 1 0 NACHT domain MobB PF03205.9 gi|557693720|ref|YP_008796774.1| - 0.046 13.4 0.1 0.083 12.5 0.0 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_19 PF13245.1 gi|557693720|ref|YP_008796774.1| - 0.064 13.0 0.1 0.13 11.9 0.1 1.6 1 0 0 1 1 1 0 Part of AAA domain AAA PF00004.24 gi|557693720|ref|YP_008796774.1| - 0.076 13.2 0.0 0.14 12.3 0.0 1.7 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_18 PF13238.1 gi|557693720|ref|YP_008796774.1| - 0.14 12.4 0.1 0.3 11.3 0.1 1.6 1 0 0 1 1 1 0 AAA domain TRM PF02005.11 gi|557693721|ref|YP_008796775.1| - 5.9e-88 295.3 0.0 7.2e-88 295.0 0.0 1.0 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase Met_10 PF02475.11 gi|557693721|ref|YP_008796775.1| - 3e-07 30.2 0.0 4.4e-07 29.6 0.0 1.2 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_26 PF13659.1 gi|557693721|ref|YP_008796775.1| - 7e-07 29.2 0.3 3.2e-06 27.1 0.2 2.1 1 1 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|557693721|ref|YP_008796775.1| - 0.0067 15.8 0.0 0.012 14.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_31 PF13847.1 gi|557693721|ref|YP_008796775.1| - 0.0094 15.5 0.0 0.013 15.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.10 gi|557693721|ref|YP_008796775.1| - 0.013 14.8 0.0 0.022 14.1 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical protein 95 PrmA PF06325.8 gi|557693721|ref|YP_008796775.1| - 0.024 13.7 0.1 0.034 13.2 0.0 1.2 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) Spermine_synth PF01564.12 gi|557693721|ref|YP_008796775.1| - 0.061 12.2 0.0 0.094 11.6 0.0 1.2 1 0 0 1 1 1 0 Spermine/spermidine synthase Methyltransf_24 PF13578.1 gi|557693721|ref|YP_008796775.1| - 0.07 13.9 0.0 0.18 12.6 0.0 1.6 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_3 PF01596.12 gi|557693721|ref|YP_008796775.1| - 0.18 10.8 0.0 0.32 10.0 0.0 1.3 1 0 0 1 1 1 0 O-methyltransferase FtsJ PF01728.14 gi|557693722|ref|YP_008796776.1| - 2.2e-40 138.5 0.0 2.5e-40 138.3 0.0 1.0 1 0 0 1 1 1 1 FtsJ-like methyltransferase PCMT PF01135.14 gi|557693722|ref|YP_008796776.1| - 1.4e-06 27.9 0.0 1.8e-06 27.6 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Fibrillarin PF01269.12 gi|557693722|ref|YP_008796776.1| - 1.1e-05 24.4 0.0 1.6e-05 23.9 0.0 1.4 1 1 0 1 1 1 1 Fibrillarin Methyltransf_31 PF13847.1 gi|557693722|ref|YP_008796776.1| - 8.7e-05 22.1 0.0 0.00019 21.0 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|557693722|ref|YP_008796776.1| - 0.00014 21.8 0.2 0.0002 21.3 0.1 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|557693722|ref|YP_008796776.1| - 0.00038 21.0 0.1 0.00063 20.3 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|557693722|ref|YP_008796776.1| - 0.004 17.5 0.1 0.0086 16.5 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain Nol1_Nop2_Fmu PF01189.12 gi|557693722|ref|YP_008796776.1| - 0.025 13.9 0.0 0.04 13.2 0.0 1.2 1 0 0 1 1 1 0 NOL1/NOP2/sun family Methyltransf_23 PF13489.1 gi|557693722|ref|YP_008796776.1| - 0.097 12.3 0.0 0.28 10.8 0.0 1.8 1 1 0 1 1 1 0 Methyltransferase domain RNA_pol_Rpc34 PF05158.7 gi|557693723|ref|YP_008796777.1| - 0.00056 19.1 0.6 0.098 11.8 0.1 2.1 1 1 1 2 2 2 2 RNA polymerase Rpc34 subunit MarR PF01047.17 gi|557693723|ref|YP_008796777.1| - 0.006 16.2 0.0 0.0091 15.6 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_34 PF13601.1 gi|557693723|ref|YP_008796777.1| - 0.019 15.0 0.0 0.025 14.5 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain TFIIB PF00382.14 gi|557693724|ref|YP_008796778.1| - 2.5e-24 84.8 1.2 2e-14 53.1 0.1 2.2 2 0 0 2 2 2 2 Transcription factor TFIIB repeat Rrf2 PF02082.15 gi|557693724|ref|YP_008796778.1| - 0.00013 22.0 0.1 0.082 13.0 0.0 2.4 2 0 0 2 2 2 2 Transcriptional regulator DUF4129 PF13559.1 gi|557693724|ref|YP_008796778.1| - 0.011 15.6 0.7 0.025 14.5 0.1 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4129) HTH_36 PF13730.1 gi|557693724|ref|YP_008796778.1| - 0.03 14.4 0.2 7.2 6.8 0.0 2.5 2 0 0 2 2 2 0 Helix-turn-helix domain Cyclin_N PF00134.18 gi|557693724|ref|YP_008796778.1| - 0.032 13.8 0.0 0.076 12.5 0.0 1.6 1 0 0 1 1 1 0 Cyclin, N-terminal domain Gar1 PF04410.9 gi|557693725|ref|YP_008796779.1| - 8.2e-11 41.5 0.0 8.4e-11 41.5 0.0 1.0 1 0 0 1 1 1 1 Gar1/Naf1 RNA binding region PRC PF05239.11 gi|557693725|ref|YP_008796779.1| - 0.014 15.2 0.1 0.019 14.7 0.0 1.4 1 0 0 1 1 1 0 PRC-barrel domain GCV_T_C PF08669.6 gi|557693725|ref|YP_008796779.1| - 0.12 12.4 0.0 0.13 12.3 0.0 1.2 1 0 0 1 1 1 0 Glycine cleavage T-protein C-terminal barrel domain SRP19 PF01922.12 gi|557693726|ref|YP_008796780.1| - 2.9e-22 79.0 0.0 3.3e-22 78.8 0.0 1.0 1 0 0 1 1 1 1 SRP19 protein Ribosomal_S8e PF01201.17 gi|557693727|ref|YP_008796781.1| - 5e-30 104.3 2.9 5.6e-30 104.1 2.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S8e DUF387 PF04079.11 gi|557693728|ref|YP_008796782.1| - 9.4e-35 119.3 0.1 1.2e-34 119.0 0.1 1.1 1 0 0 1 1 1 1 Putative transcriptional regulators (Ypuh-like) HTH_15 PF12324.3 gi|557693728|ref|YP_008796782.1| - 0.00042 19.9 0.0 0.12 12.0 0.0 2.6 3 0 0 3 3 3 2 Helix-turn-helix domain of alkylmercury lyase HTH_20 PF12840.2 gi|557693728|ref|YP_008796782.1| - 0.012 15.3 0.0 0.072 12.9 0.0 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain ScpA_ScpB PF02616.9 gi|557693729|ref|YP_008796783.1| - 5.5e-14 52.3 0.9 7.7e-08 32.2 0.5 2.0 2 0 0 2 2 2 2 ScpA/B protein Rad21_Rec8 PF04824.11 gi|557693729|ref|YP_008796783.1| - 0.00013 21.0 0.0 0.00033 19.7 0.0 1.7 1 0 0 1 1 1 1 Conserved region of Rad21 / Rec8 like protein SMC_N PF02463.14 gi|557693730|ref|YP_008796784.1| - 1.2e-60 204.4 5.6 4.2e-60 202.7 3.9 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_21 PF13304.1 gi|557693730|ref|YP_008796784.1| - 7.1e-14 52.4 9.8 4e-08 33.5 0.1 3.4 4 1 0 4 4 4 2 AAA domain AAA_29 PF13555.1 gi|557693730|ref|YP_008796784.1| - 2.9e-06 26.6 0.0 4.1e-05 23.0 0.0 2.4 2 0 0 2 2 2 1 P-loop containing region of AAA domain AAA_15 PF13175.1 gi|557693730|ref|YP_008796784.1| - 0.0059 15.7 0.1 0.0059 15.7 0.1 5.2 3 2 0 3 3 3 1 AAA ATPase domain AAA_19 PF13245.1 gi|557693730|ref|YP_008796784.1| - 0.057 13.1 0.1 0.32 10.7 0.1 2.4 1 0 0 1 1 1 0 Part of AAA domain ABC_tran PF00005.22 gi|557693730|ref|YP_008796784.1| - 0.28 11.4 0.0 0.28 11.4 0.0 7.2 3 2 1 5 5 5 0 ABC transporter AAA_23 PF13476.1 gi|557693730|ref|YP_008796784.1| - 0.51 10.6 124.4 56 3.9 46.0 7.1 2 2 0 2 2 2 0 AAA domain Reo_sigmaC PF04582.7 gi|557693730|ref|YP_008796784.1| - 0.78 8.8 43.7 0.77 8.8 1.9 4.7 2 2 0 4 4 4 0 Reovirus sigma C capsid protein AAA_22 PF13401.1 gi|557693730|ref|YP_008796784.1| - 1.5 8.9 0.0 1.5 8.9 0.0 5.8 4 2 4 8 8 8 0 AAA domain Peptidase_M24 PF00557.19 gi|557693731|ref|YP_008796785.1| - 6.5e-22 78.1 0.0 7.8e-22 77.8 0.0 1.1 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.13 gi|557693731|ref|YP_008796785.1| - 0.062 13.7 0.0 0.12 12.8 0.0 1.5 1 0 0 1 1 1 0 Creatinase/Prolidase N-terminal domain Prenyltransf PF01255.14 gi|557693732|ref|YP_008796786.1| - 6.9e-79 264.0 0.0 7.8e-79 263.9 0.0 1.0 1 0 0 1 1 1 1 Putative undecaprenyl diphosphate synthase DUF373 PF04123.8 gi|557693733|ref|YP_008796787.1| - 1.5e-84 284.0 3.5 2e-84 283.5 2.4 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF373) NTP_transf_2 PF01909.18 gi|557693734|ref|YP_008796788.1| - 8.3e-09 35.6 0.1 1.2e-08 35.1 0.1 1.2 1 0 0 1 1 1 1 Nucleotidyltransferase domain LysR_substrate PF03466.15 gi|557693734|ref|YP_008796788.1| - 0.031 13.3 0.2 0.095 11.7 0.2 1.7 2 0 0 2 2 2 0 LysR substrate binding domain DUF86 PF01934.12 gi|557693735|ref|YP_008796789.1| - 1.8e-14 53.3 0.0 2.3e-14 53.0 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF86 Cytochrom_B562 PF07361.6 gi|557693736|ref|YP_008796790.1| - 0.0091 16.3 0.4 0.014 15.7 0.3 1.5 1 0 0 1 1 1 1 Cytochrome b562 AKAP7_RIRII_bdg PF10470.4 gi|557693736|ref|YP_008796790.1| - 0.0096 15.7 1.4 0.015 15.0 1.0 1.3 1 0 0 1 1 1 1 PKA-RI-RII subunit binding domain of A-kinase anchor protein PP2C_C PF07830.8 gi|557693736|ref|YP_008796790.1| - 0.087 12.9 0.6 0.85 9.7 0.2 2.3 3 0 0 3 3 3 0 Protein serine/threonine phosphatase 2C, C-terminal domain Ribosomal_S19 PF00203.16 gi|557693737|ref|YP_008796791.1| - 3.1e-28 97.2 0.1 4.2e-28 96.7 0.1 1.2 1 0 0 1 1 1 1 Ribosomal protein S19 Ribosomal_L2_C PF03947.13 gi|557693739|ref|YP_008796793.1| - 2e-33 114.9 0.3 2.8e-33 114.4 0.2 1.2 1 0 0 1 1 1 1 Ribosomal Proteins L2, C-terminal domain Ribosomal_L2 PF00181.18 gi|557693739|ref|YP_008796793.1| - 1.4e-10 40.9 0.6 2.6e-10 40.1 0.0 1.8 2 0 0 2 2 2 1 Ribosomal Proteins L2, RNA binding domain Ribosomal_L23 PF00276.15 gi|557693740|ref|YP_008796794.1| - 1.3e-16 60.3 5.4 1.9e-16 59.7 3.7 1.3 1 1 0 1 1 1 1 Ribosomal protein L23 HSDR_N_2 PF13588.1 gi|557693740|ref|YP_008796794.1| - 0.018 14.8 0.7 0.021 14.6 0.5 1.1 1 0 0 1 1 1 0 Type I restriction enzyme R protein N terminus (HSDR_N) SRPRB PF09439.5 gi|557693740|ref|YP_008796794.1| - 0.037 13.2 0.3 0.039 13.1 0.2 1.2 1 0 0 1 1 1 0 Signal recognition particle receptor beta subunit Ubiquitin_3 PF14836.1 gi|557693740|ref|YP_008796794.1| - 0.094 12.3 0.2 0.13 11.9 0.1 1.3 1 1 0 1 1 1 0 Ubiquitin-like domain Ribosomal_L4 PF00573.17 gi|557693741|ref|YP_008796795.1| - 1.6e-40 138.5 0.1 1.8e-40 138.3 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein L4/L1 family Ribosomal_L3 PF00297.17 gi|557693742|ref|YP_008796796.1| - 2.9e-57 194.0 0.1 3.4e-57 193.8 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein L3 ATP-grasp_2 PF08442.5 gi|557693742|ref|YP_008796796.1| - 3.6e-06 26.5 0.2 4.8e-06 26.0 0.1 1.1 1 0 0 1 1 1 1 ATP-grasp domain Asn_synthase PF00733.16 gi|557693744|ref|YP_008796798.1| - 2.7e-32 112.2 0.2 4.5e-32 111.5 0.2 1.3 1 1 0 1 1 1 1 Asparagine synthase NAD_synthase PF02540.12 gi|557693744|ref|YP_008796798.1| - 0.068 12.0 0.1 0.11 11.4 0.0 1.3 1 0 0 1 1 1 0 NAD synthase HD_3 PF13023.1 gi|557693745|ref|YP_008796799.1| - 4.1e-32 111.2 0.0 4.9e-32 110.9 0.0 1.0 1 0 0 1 1 1 1 HD domain HD PF01966.17 gi|557693745|ref|YP_008796799.1| - 2.8e-06 27.3 0.1 4.3e-06 26.7 0.0 1.3 1 0 0 1 1 1 1 HD domain Peptidase_S32 PF05579.8 gi|557693745|ref|YP_008796799.1| - 0.051 12.5 0.0 0.063 12.2 0.0 1.1 1 0 0 1 1 1 0 Equine arteritis virus serine endopeptidase S32 DNA_primase_lrg PF04104.9 gi|557693746|ref|YP_008796800.1| - 1.3e-27 96.6 0.0 2.2e-27 95.9 0.0 1.3 1 0 0 1 1 1 1 Eukaryotic and archaeal DNA primase, large subunit Erythro-docking PF09277.6 gi|557693746|ref|YP_008796800.1| - 0.035 13.7 0.2 0.082 12.6 0.1 1.6 1 0 0 1 1 1 0 Erythronolide synthase, docking MFS_1 PF07690.11 gi|557693747|ref|YP_008796801.1| - 1.2e-30 106.4 38.2 5.6e-16 58.1 8.1 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|557693747|ref|YP_008796801.1| - 5.3e-06 25.2 28.3 2.4e-05 23.1 8.6 2.5 2 1 0 2 2 2 2 Sugar (and other) transporter MFS_1_like PF12832.2 gi|557693747|ref|YP_008796801.1| - 0.92 9.3 5.5 0.56 10.0 0.1 3.1 3 0 0 3 3 3 0 MFS_1 like family Sod_Fe_C PF02777.13 gi|557693748|ref|YP_008796802.1| - 5.4e-39 132.3 0.9 8.2e-39 131.7 0.6 1.2 1 0 0 1 1 1 1 Iron/manganese superoxide dismutases, C-terminal domain Sod_Fe_N PF00081.17 gi|557693748|ref|YP_008796802.1| - 2.3e-31 107.9 2.2 3e-31 107.5 0.3 1.9 2 0 0 2 2 2 1 Iron/manganese superoxide dismutases, alpha-hairpin domain MFS_1 PF07690.11 gi|557693749|ref|YP_008796803.1| - 4.2e-24 84.9 67.2 5.3e-18 64.8 22.3 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily OATP PF03137.15 gi|557693749|ref|YP_008796803.1| - 0.024 12.6 1.5 0.037 12.0 0.3 1.8 2 0 0 2 2 2 0 Organic Anion Transporter Polypeptide (OATP) family Shisa PF13908.1 gi|557693750|ref|YP_008796804.1| - 0.0051 17.0 0.7 0.0077 16.4 0.5 1.2 1 0 0 1 1 1 1 Wnt and FGF inhibitory regulator HhH-GPD PF00730.20 gi|557693751|ref|YP_008796805.1| - 6.9e-22 77.7 0.0 9.9e-22 77.2 0.0 1.2 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.18 gi|557693751|ref|YP_008796805.1| - 2.5e-08 33.1 0.1 6e-08 31.9 0.0 1.7 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_5 PF14520.1 gi|557693751|ref|YP_008796805.1| - 0.00098 19.2 0.5 0.089 12.9 0.1 2.0 1 1 1 2 2 2 2 Helix-hairpin-helix domain EndIII_4Fe-2S PF10576.4 gi|557693751|ref|YP_008796805.1| - 0.4 10.9 7.3 0.83 9.9 5.1 1.6 1 0 0 1 1 1 0 Iron-sulfur binding domain of endonuclease III AhpC-TSA PF00578.16 gi|557693752|ref|YP_008796806.1| - 1.9e-44 150.3 0.0 2.2e-44 150.1 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.5 gi|557693752|ref|YP_008796806.1| - 2.8e-26 91.8 0.0 3.2e-26 91.6 0.0 1.0 1 0 0 1 1 1 1 Redoxin DUF899 PF05988.7 gi|557693752|ref|YP_008796806.1| - 1.8e-06 27.5 0.0 2.2e-06 27.2 0.0 1.0 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF899) Thioredoxin_8 PF13905.1 gi|557693752|ref|YP_008796806.1| - 7.1e-05 22.8 0.0 0.0001 22.3 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin-like AhpC-TSA_2 PF13911.1 gi|557693752|ref|YP_008796806.1| - 0.00015 21.6 0.0 0.00029 20.7 0.0 1.3 1 1 0 1 1 1 1 AhpC/TSA antioxidant enzyme SCO1-SenC PF02630.9 gi|557693752|ref|YP_008796806.1| - 0.011 15.3 0.0 0.018 14.6 0.0 1.3 1 0 0 1 1 1 0 SCO1/SenC ACT PF01842.20 gi|557693752|ref|YP_008796806.1| - 0.016 14.7 0.2 0.75 9.3 0.0 2.7 3 1 0 3 3 3 0 ACT domain Fe-S_biosyn PF01521.15 gi|557693753|ref|YP_008796807.1| - 1.3e-20 73.3 0.0 1.5e-20 73.1 0.0 1.0 1 0 0 1 1 1 1 Iron-sulphur cluster biosynthesis RNA_pol_A_bac PF01000.21 gi|557693754|ref|YP_008796808.1| - 5.2e-24 84.5 0.0 7.4e-24 84.0 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb3/RpoA insert domain RNA_pol_L PF01193.19 gi|557693754|ref|YP_008796808.1| - 1.1e-10 40.4 0.0 1.4e-10 40.0 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain Elf1 PF05129.8 gi|557693754|ref|YP_008796808.1| - 0.088 12.5 0.3 0.15 11.7 0.2 1.3 1 0 0 1 1 1 0 Transcription elongation factor Elf1 like Ribosomal_L18e PF00828.14 gi|557693755|ref|YP_008796809.1| - 1e-16 61.4 0.4 1.3e-16 61.1 0.3 1.2 1 0 0 1 1 1 1 Ribosomal protein L18e/L15 RNA_pol_Rpb2_4 PF04566.8 gi|557693755|ref|YP_008796809.1| - 0.012 15.4 2.6 0.032 14.0 1.2 1.9 1 1 1 2 2 2 0 RNA polymerase Rpb2, domain 4 PsbP PF01789.11 gi|557693755|ref|YP_008796809.1| - 0.064 12.6 0.0 0.087 12.2 0.0 1.2 1 0 0 1 1 1 0 PsbP CpcD PF01383.16 gi|557693755|ref|YP_008796809.1| - 0.96 9.6 3.6 4.1 7.6 0.0 2.7 2 1 0 2 2 2 0 CpcD/allophycocyanin linker domain Ribosomal_L13 PF00572.13 gi|557693756|ref|YP_008796810.1| - 2.3e-21 76.1 0.1 3.4e-21 75.6 0.1 1.3 1 1 0 1 1 1 1 Ribosomal protein L13 PHB_acc_N PF07879.6 gi|557693756|ref|YP_008796810.1| - 0.012 15.3 0.1 0.19 11.4 0.0 2.3 2 0 0 2 2 2 0 PHB/PHA accumulation regulator DNA-binding domain RsgI_N PF12791.2 gi|557693756|ref|YP_008796810.1| - 0.088 12.4 0.0 0.25 11.0 0.0 1.8 1 0 0 1 1 1 0 Anti-sigma factor N-terminus Ribosomal_S9 PF00380.14 gi|557693757|ref|YP_008796811.1| - 8.2e-32 109.9 0.0 9.4e-32 109.8 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S9/S16 DUF3886 PF13025.1 gi|557693757|ref|YP_008796811.1| - 0.14 12.1 0.5 0.23 11.4 0.3 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3886) RNA_pol_N PF01194.12 gi|557693758|ref|YP_008796812.1| - 2.2e-29 101.2 0.7 2.7e-29 100.9 0.5 1.1 1 0 0 1 1 1 1 RNA polymerases N / 8 kDa subunit Chordopox_RPO7 PF05864.7 gi|557693758|ref|YP_008796812.1| - 0.0029 17.6 0.2 0.0038 17.2 0.2 1.3 1 0 0 1 1 1 1 Chordopoxvirus DNA-directed RNA polymerase 7 kDa polypeptide (RPO7) Enolase_C PF00113.17 gi|557693759|ref|YP_008796813.1| - 1.1e-58 198.5 0.0 1.6e-58 198.0 0.0 1.1 1 0 0 1 1 1 1 Enolase, C-terminal TIM barrel domain Enolase_N PF03952.11 gi|557693759|ref|YP_008796813.1| - 2.6e-28 98.5 0.0 4.1e-28 97.9 0.0 1.3 1 0 0 1 1 1 1 Enolase, N-terminal domain MR_MLE PF01188.16 gi|557693759|ref|YP_008796813.1| - 0.00087 19.7 0.0 0.0021 18.5 0.0 1.7 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain MR_MLE_C PF13378.1 gi|557693759|ref|YP_008796813.1| - 0.0021 18.0 0.0 0.0058 16.5 0.0 1.8 1 0 0 1 1 1 1 Enolase C-terminal domain-like Succ_CoA_lig PF13607.1 gi|557693759|ref|YP_008796813.1| - 0.02 14.5 0.0 0.041 13.4 0.0 1.4 1 0 0 1 1 1 0 Succinyl-CoA ligase like flavodoxin domain MAAL_C PF07476.6 gi|557693759|ref|YP_008796813.1| - 0.13 11.1 0.0 0.21 10.5 0.0 1.3 1 0 0 1 1 1 0 Methylaspartate ammonia-lyase C-terminus Ribosomal_S2 PF00318.15 gi|557693760|ref|YP_008796814.1| - 3.2e-33 114.7 0.7 8e-16 57.8 0.0 2.0 1 1 1 2 2 2 2 Ribosomal protein S2 DNA_pol_B PF00136.16 gi|557693761|ref|YP_008796815.1| - 5e-27 94.8 0.0 8.6e-27 94.0 0.0 1.3 1 0 0 1 1 1 1 DNA polymerase family B DNA_pol_B_exo1 PF03104.14 gi|557693761|ref|YP_008796815.1| - 7.7e-09 34.8 0.0 1.4e-08 34.0 0.0 1.3 1 0 0 1 1 1 1 DNA polymerase family B, exonuclease domain Bac_luciferase PF00296.15 gi|557693762|ref|YP_008796816.1| - 2.9e-62 210.5 0.0 4.4e-62 209.9 0.0 1.2 1 0 0 1 1 1 1 Luciferase-like monooxygenase TMP-TENI PF02581.12 gi|557693762|ref|YP_008796816.1| - 0.095 11.8 0.0 0.19 10.8 0.0 1.5 1 0 0 1 1 1 0 Thiamine monophosphate synthase/TENI PIN PF01850.16 gi|557693763|ref|YP_008796817.1| - 8.7e-11 42.2 0.2 1.1e-10 41.8 0.1 1.1 1 0 0 1 1 1 1 PIN domain ComZ PF10815.3 gi|557693764|ref|YP_008796818.1| - 0.066 12.9 0.2 0.11 12.2 0.1 1.4 1 1 0 1 1 1 0 ComZ RHH_4 PF13467.1 gi|557693764|ref|YP_008796818.1| - 0.078 12.8 0.4 0.72 9.7 0.3 2.4 1 1 0 1 1 1 0 Ribbon-helix-helix domain UPF0047 PF01894.12 gi|557693766|ref|YP_008796820.1| - 1.5e-36 124.7 0.1 1.8e-36 124.5 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein family UPF0047 DUF4256 PF14066.1 gi|557693767|ref|YP_008796821.1| - 1.5e-66 223.1 0.0 1.7e-66 223.0 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF4256) Methyltransf_11 PF08241.7 gi|557693768|ref|YP_008796822.1| - 5e-12 46.1 0.0 7.4e-12 45.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|557693768|ref|YP_008796822.1| - 7.5e-07 28.8 0.0 9.6e-07 28.5 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|557693768|ref|YP_008796822.1| - 6.5e-05 22.1 0.0 7.5e-05 21.9 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_26 PF13659.1 gi|557693768|ref|YP_008796822.1| - 0.00017 21.5 0.0 0.00027 20.9 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|557693768|ref|YP_008796822.1| - 0.0016 18.9 0.0 0.0024 18.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_8 PF05148.10 gi|557693768|ref|YP_008796822.1| - 0.0056 16.3 0.0 0.0073 15.9 0.0 1.2 1 0 0 1 1 1 1 Hypothetical methyltransferase Methyltransf_12 PF08242.7 gi|557693768|ref|YP_008796822.1| - 0.013 15.9 0.0 0.022 15.2 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain PMT_2 PF13231.1 gi|557693769|ref|YP_008796823.1| - 9.3e-16 58.1 10.8 9.3e-16 58.1 7.5 3.0 2 1 0 2 2 2 1 Dolichyl-phosphate-mannose-protein mannosyltransferase PMT PF02366.13 gi|557693769|ref|YP_008796823.1| - 5.3e-07 29.2 11.8 0.00073 18.9 8.0 3.9 2 1 1 3 3 3 2 Dolichyl-phosphate-mannose-protein mannosyltransferase ELFV_dehydrog PF00208.16 gi|557693770|ref|YP_008796824.1| - 3.4e-26 92.3 0.0 5.6e-26 91.6 0.0 1.2 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ELFV_dehydrog_N PF02812.13 gi|557693770|ref|YP_008796824.1| - 5.6e-22 77.7 0.0 9.6e-22 76.9 0.0 1.3 1 0 0 1 1 1 1 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain Peptidase_M24 PF00557.19 gi|557693771|ref|YP_008796825.1| - 1.1e-33 116.5 0.0 1.5e-33 116.1 0.0 1.2 1 0 0 1 1 1 1 Metallopeptidase family M24 DUF92 PF01940.11 gi|557693772|ref|YP_008796826.1| - 1.2e-50 171.7 11.4 1.5e-50 171.4 7.9 1.0 1 0 0 1 1 1 1 Integral membrane protein DUF92 Desulfoferrod_N PF06397.7 gi|557693772|ref|YP_008796826.1| - 0.022 14.1 1.4 0.043 13.2 0.9 1.4 1 0 0 1 1 1 0 Desulfoferrodoxin, N-terminal domain Kelch_1 PF01344.20 gi|557693772|ref|YP_008796826.1| - 0.031 13.8 0.2 0.085 12.4 0.1 1.8 1 0 0 1 1 1 0 Kelch motif Kelch_5 PF13854.1 gi|557693772|ref|YP_008796826.1| - 0.24 11.4 4.3 0.17 11.8 0.7 2.5 2 0 0 2 2 2 0 Kelch motif CTP_transf_1 PF01148.15 gi|557693772|ref|YP_008796826.1| - 0.87 9.1 15.8 7.8 6.0 10.9 2.2 1 1 0 1 1 1 0 Cytidylyltransferase family tRNA-synt_His PF13393.1 gi|557693773|ref|YP_008796827.1| - 7.6e-71 238.7 0.0 8.6e-71 238.5 0.0 1.0 1 0 0 1 1 1 1 Histidyl-tRNA synthetase tRNA-synt_2b PF00587.20 gi|557693773|ref|YP_008796827.1| - 1.8e-23 83.0 0.1 4e-23 81.8 0.0 1.6 2 0 0 2 2 2 1 tRNA synthetase class II core domain (G, H, P, S and T) tRNA-synt_2d PF01409.15 gi|557693773|ref|YP_008796827.1| - 6.3e-05 22.2 0.0 0.00011 21.5 0.0 1.4 1 0 0 1 1 1 1 tRNA synthetases class II core domain (F) tRNA-synt_2 PF00152.15 gi|557693773|ref|YP_008796827.1| - 0.0087 14.8 0.2 0.82 8.3 0.0 2.4 2 1 0 2 2 2 2 tRNA synthetases class II (D, K and N) Trypsin_2 PF13365.1 gi|557693774|ref|YP_008796828.1| - 2.3e-24 85.6 0.5 4.4e-24 84.7 0.3 1.5 1 0 0 1 1 1 1 Trypsin-like peptidase domain Trypsin PF00089.21 gi|557693774|ref|YP_008796828.1| - 1.6e-15 57.3 0.2 5.3e-15 55.5 0.2 1.8 1 1 0 1 1 1 1 Trypsin PDZ_2 PF13180.1 gi|557693774|ref|YP_008796828.1| - 6.6e-15 54.7 2.1 4.3e-13 48.9 1.5 2.6 1 1 0 1 1 1 1 PDZ domain PDZ PF00595.19 gi|557693774|ref|YP_008796828.1| - 1.1e-08 35.1 5.1 0.00024 21.1 0.3 2.8 2 1 1 3 3 3 2 PDZ domain (Also known as DHR or GLGF) Peptidase_S46 PF10459.4 gi|557693774|ref|YP_008796828.1| - 0.023 13.1 1.7 0.027 12.9 0.2 1.6 2 0 0 2 2 2 0 Peptidase S46 Tricorn_PDZ PF14685.1 gi|557693774|ref|YP_008796828.1| - 0.067 12.9 1.2 0.35 10.6 0.8 2.3 1 1 0 1 1 1 0 Tricorn protease PDZ domain FAA_hydrolase PF01557.13 gi|557693775|ref|YP_008796829.1| - 8e-63 211.7 0.0 1.1e-62 211.3 0.0 1.1 1 0 0 1 1 1 1 Fumarylacetoacetate (FAA) hydrolase family Aldedh PF00171.17 gi|557693776|ref|YP_008796830.1| - 1.1e-135 452.5 0.0 1.3e-135 452.3 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family LuxC PF05893.9 gi|557693776|ref|YP_008796830.1| - 0.044 12.5 0.0 0.066 11.9 0.0 1.3 1 0 0 1 1 1 0 Acyl-CoA reductase (LuxC) Exotox-A_target PF09102.5 gi|557693776|ref|YP_008796830.1| - 0.044 13.2 0.0 0.086 12.3 0.0 1.4 1 0 0 1 1 1 0 Exotoxin A, targeting B5 PF03484.10 gi|557693777|ref|YP_008796831.1| - 3.7e-27 93.9 0.0 1.9e-17 62.8 0.0 2.8 3 0 0 3 3 3 2 tRNA synthetase B5 domain B3_4 PF03483.12 gi|557693777|ref|YP_008796831.1| - 2.5e-08 33.5 0.0 4.5e-08 32.7 0.0 1.4 1 0 0 1 1 1 1 B3/4 domain HTH_33 PF13592.1 gi|557693777|ref|YP_008796831.1| - 0.13 11.7 0.0 0.4 10.2 0.0 1.8 2 0 0 2 2 2 0 Winged helix-turn helix tRNA-synt_2d PF01409.15 gi|557693778|ref|YP_008796832.1| - 4e-92 307.8 0.0 8.2e-92 306.8 0.0 1.5 2 0 0 2 2 2 1 tRNA synthetases class II core domain (F) tRNA-synt_2 PF00152.15 gi|557693778|ref|YP_008796832.1| - 1.1e-07 30.9 0.5 0.0073 15.1 0.0 3.2 3 0 0 3 3 3 2 tRNA synthetases class II (D, K and N) tRNA-synt_2b PF00587.20 gi|557693778|ref|YP_008796832.1| - 0.00075 19.1 0.4 0.012 15.2 0.3 2.2 1 1 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) RepC PF06504.6 gi|557693778|ref|YP_008796832.1| - 0.024 13.5 0.0 0.039 12.9 0.0 1.3 1 0 0 1 1 1 0 Replication protein C (RepC) Mrr_N PF14338.1 gi|557693778|ref|YP_008796832.1| - 0.089 12.8 0.0 21 5.2 0.0 3.3 3 0 0 3 3 3 0 Mrr N-terminal domain DUF898 PF05987.8 gi|557693779|ref|YP_008796833.1| - 1.6 7.5 18.8 2.1 7.1 13.0 1.2 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF898) DUF996 PF06195.8 gi|557693779|ref|YP_008796833.1| - 2.7 7.9 21.5 0.67 9.9 3.4 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF996) SIS PF01380.17 gi|557693780|ref|YP_008796834.1| - 1.8e-09 37.3 0.0 8.5e-09 35.1 0.0 2.1 2 0 0 2 2 2 1 SIS domain SIS_2 PF13580.1 gi|557693780|ref|YP_008796834.1| - 0.001 18.7 0.2 0.0046 16.6 0.0 2.3 2 0 0 2 2 2 1 SIS domain AIRS_C PF02769.17 gi|557693780|ref|YP_008796834.1| - 0.098 12.6 0.0 1.8 8.5 0.0 2.5 3 0 0 3 3 3 0 AIR synthase related protein, C-terminal domain Bac_luciferase PF00296.15 gi|557693781|ref|YP_008796835.1| - 3.6e-60 203.6 0.1 4.6e-60 203.3 0.1 1.1 1 0 0 1 1 1 1 Luciferase-like monooxygenase Cnd1_N PF12922.2 gi|557693781|ref|YP_008796835.1| - 0.19 11.3 0.0 0.3 10.7 0.0 1.2 1 0 0 1 1 1 0 non-SMC mitotic condensation complex subunit 1, N-term Cyclase PF04199.8 gi|557693782|ref|YP_008796836.1| - 5.8e-28 97.6 0.0 7.1e-28 97.4 0.0 1.1 1 0 0 1 1 1 1 Putative cyclase UbiA PF01040.13 gi|557693783|ref|YP_008796837.1| - 8.8e-37 126.7 18.3 1.1e-36 126.4 12.7 1.1 1 0 0 1 1 1 1 UbiA prenyltransferase family DUF1600 PF07667.6 gi|557693783|ref|YP_008796837.1| - 1.6 8.8 5.5 0.33 11.0 0.2 2.3 2 1 0 2 2 2 0 Protein of unknown function (DUF1600) tRNA_int_endo PF01974.12 gi|557693784|ref|YP_008796838.1| - 1.9e-12 46.7 0.3 3.6e-12 45.9 0.2 1.4 1 0 0 1 1 1 1 tRNA intron endonuclease, catalytic C-terminal domain tRNA_int_endo_N PF02778.9 gi|557693784|ref|YP_008796838.1| - 4.6e-07 29.2 0.6 4.6e-07 29.2 0.4 2.1 2 1 1 3 3 3 1 tRNA intron endonuclease, N-terminal domain NdhN PF11909.3 gi|557693784|ref|YP_008796838.1| - 0.045 13.0 0.0 0.071 12.4 0.0 1.3 1 0 0 1 1 1 0 NADH-quinone oxidoreductase cyanobacterial subunit N DUF2012 PF09430.5 gi|557693785|ref|YP_008796839.1| - 0.029 14.2 0.2 0.051 13.4 0.2 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2012) DUF4129 PF13559.1 gi|557693786|ref|YP_008796840.1| - 0.00082 19.2 0.1 0.0013 18.6 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4129) PqiA PF04403.8 gi|557693786|ref|YP_008796840.1| - 0.0094 15.5 0.2 0.015 14.8 0.1 1.3 1 0 0 1 1 1 1 Paraquat-inducible protein A Peptidase_S49_N PF08496.5 gi|557693786|ref|YP_008796840.1| - 0.061 13.1 0.5 0.076 12.8 0.3 1.1 1 0 0 1 1 1 0 Peptidase family S49 N-terminal Ribos_L4_asso_C PF14374.1 gi|557693787|ref|YP_008796841.1| - 0.1 12.4 0.1 0.16 11.8 0.1 1.3 1 0 0 1 1 1 0 60S ribosomal protein L4 C-terminal domain HycH PF07450.6 gi|557693787|ref|YP_008796841.1| - 0.11 12.6 0.1 0.14 12.2 0.0 1.2 1 0 0 1 1 1 0 Formate hydrogenlyase maturation protein HycH AAA_3 PF07726.6 gi|557693788|ref|YP_008796842.1| - 3.4e-62 207.8 0.0 5.6e-62 207.1 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|557693788|ref|YP_008796842.1| - 9.7e-17 60.9 0.0 2.2e-16 59.8 0.0 1.6 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) MCM PF00493.18 gi|557693788|ref|YP_008796842.1| - 1.5e-07 30.5 0.1 1.3e-06 27.4 0.0 2.1 1 1 0 1 1 1 1 MCM2/3/5 family AAA PF00004.24 gi|557693788|ref|YP_008796842.1| - 6.9e-06 26.3 0.0 1.9e-05 24.8 0.0 1.8 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Mg_chelatase PF01078.16 gi|557693788|ref|YP_008796842.1| - 3e-05 23.2 1.0 0.0066 15.6 0.2 2.2 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI Sigma54_activat PF00158.21 gi|557693788|ref|YP_008796842.1| - 0.00015 21.2 0.0 0.0033 16.9 0.0 2.1 2 0 0 2 2 2 1 Sigma-54 interaction domain RuvB_N PF05496.7 gi|557693788|ref|YP_008796842.1| - 0.00022 20.3 0.0 0.0009 18.3 0.0 2.0 1 1 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus DUF58 PF01882.13 gi|557693789|ref|YP_008796843.1| - 1.9e-11 43.9 0.0 4e-11 42.8 0.0 1.6 1 0 0 1 1 1 1 Protein of unknown function DUF58 Fig1 PF12351.3 gi|557693790|ref|YP_008796844.1| - 7.5 6.3 14.2 0.056 13.3 3.1 1.9 2 0 0 2 2 2 0 Ca2+ regulator and membrane fusion protein Fig1 FBPase_3 PF01950.11 gi|557693792|ref|YP_008796846.1| - 6.8e-168 558.3 0.0 7.7e-168 558.1 0.0 1.0 1 0 0 1 1 1 1 Fructose-1,6-bisphosphatase Histone PF00125.19 gi|557693793|ref|YP_008796847.1| - 4.4e-05 23.5 0.0 7.7e-05 22.7 0.0 1.4 1 1 0 1 1 1 1 Core histone H2A/H2B/H3/H4 CBFD_NFYB_HMF PF00808.18 gi|557693793|ref|YP_008796847.1| - 0.00021 21.3 0.0 0.00028 20.9 0.0 1.3 1 0 0 1 1 1 1 Histone-like transcription factor (CBF/NF-Y) and archaeal histone DUF3809 PF12723.2 gi|557693793|ref|YP_008796847.1| - 0.046 13.5 0.0 0.053 13.4 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3809) ABM PF03992.11 gi|557693794|ref|YP_008796848.1| - 5.9e-07 29.4 0.0 7.4e-07 29.1 0.0 1.1 1 0 0 1 1 1 1 Antibiotic biosynthesis monooxygenase DUF4188 PF13826.1 gi|557693794|ref|YP_008796848.1| - 0.071 13.1 0.0 0.091 12.8 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4188) AfaD PF05775.7 gi|557693795|ref|YP_008796849.1| - 0.14 12.1 0.0 0.18 11.8 0.0 1.2 1 0 0 1 1 1 0 Enterobacteria AfaD invasin protein DUF72 PF01904.13 gi|557693796|ref|YP_008796850.1| - 1.4e-40 139.5 1.5 1.7e-40 139.2 1.1 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF72 AP_endonuc_2 PF01261.19 gi|557693796|ref|YP_008796850.1| - 0.044 13.0 0.1 0.1 11.8 0.0 1.8 1 1 0 1 1 1 0 Xylose isomerase-like TIM barrel DUF3370 PF11850.3 gi|557693796|ref|YP_008796850.1| - 0.1 11.0 0.0 0.13 10.7 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3370) ERAP1_C PF11838.3 gi|557693796|ref|YP_008796850.1| - 0.19 10.9 1.0 4.4 6.4 0.1 2.1 2 0 0 2 2 2 0 ERAP1-like C-terminal domain E1_dh PF00676.15 gi|557693797|ref|YP_008796851.1| - 7.5e-86 287.5 0.0 8.6e-86 287.3 0.0 1.0 1 0 0 1 1 1 1 Dehydrogenase E1 component Transketolase_N PF00456.16 gi|557693797|ref|YP_008796851.1| - 7.2e-07 28.3 0.0 1e-06 27.7 0.0 1.2 1 0 0 1 1 1 1 Transketolase, thiamine diphosphate binding domain TPP_enzyme_C PF02775.16 gi|557693797|ref|YP_008796851.1| - 8.4e-07 28.6 0.2 4.1e-06 26.4 0.2 2.0 1 1 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DXP_synthase_N PF13292.1 gi|557693797|ref|YP_008796851.1| - 2.6e-06 26.5 0.0 8e-06 24.9 0.0 1.6 1 1 0 1 1 1 1 1-deoxy-D-xylulose-5-phosphate synthase Cadherin-like PF12733.2 gi|557693797|ref|YP_008796851.1| - 0.036 14.3 0.2 0.062 13.5 0.1 1.4 1 0 0 1 1 1 0 Cadherin-like beta sandwich domain DUF987 PF06174.6 gi|557693797|ref|YP_008796851.1| - 0.083 12.4 0.0 0.21 11.1 0.0 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF987) DUF95 PF01944.12 gi|557693798|ref|YP_008796852.1| - 1.2e-07 31.5 17.8 1.7e-07 31.0 12.3 1.2 1 0 0 1 1 1 1 Integral membrane protein DUF95 FA_desaturase PF00487.19 gi|557693798|ref|YP_008796852.1| - 0.27 10.6 8.9 0.35 10.2 2.0 2.1 1 1 1 2 2 2 0 Fatty acid desaturase Arc_PepC_II PF06847.6 gi|557693799|ref|YP_008796853.1| - 4.8e-08 33.3 1.2 1.9e-07 31.3 0.1 2.4 2 1 0 2 2 2 1 Archaeal Peptidase A24 C-terminus Type II Peptidase_A24 PF01478.13 gi|557693799|ref|YP_008796853.1| - 4.9e-07 29.8 8.8 4.9e-07 29.8 6.1 1.8 2 0 0 2 2 2 1 Type IV leader peptidase family TRIQK PF15168.1 gi|557693799|ref|YP_008796853.1| - 0.03 14.2 0.2 3.2 7.7 0.0 2.6 2 1 0 2 2 2 0 Triple QxxK/R motif-containing protein family DPM3 PF08285.6 gi|557693799|ref|YP_008796853.1| - 1.3 8.8 6.2 0.59 10.0 0.6 2.7 2 1 1 3 3 3 0 Dolichol-phosphate mannosyltransferase subunit 3 (DPM3) ELFV_dehydrog PF00208.16 gi|557693800|ref|YP_008796854.1| - 1.3e-73 247.5 0.1 2.9e-73 246.4 0.1 1.5 2 0 0 2 2 2 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ELFV_dehydrog_N PF02812.13 gi|557693800|ref|YP_008796854.1| - 1.1e-51 173.8 0.0 1.7e-51 173.1 0.0 1.3 1 0 0 1 1 1 1 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 2-Hacid_dh_C PF02826.14 gi|557693800|ref|YP_008796854.1| - 0.0034 16.5 0.0 0.0065 15.6 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AlaDh_PNT_C PF01262.16 gi|557693800|ref|YP_008796854.1| - 0.0076 15.8 0.0 0.018 14.6 0.0 1.6 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain Malic_M PF03949.10 gi|557693800|ref|YP_008796854.1| - 0.027 14.0 0.1 0.049 13.1 0.0 1.3 1 0 0 1 1 1 0 Malic enzyme, NAD binding domain NAD_binding_7 PF13241.1 gi|557693800|ref|YP_008796854.1| - 0.046 13.9 0.0 0.11 12.7 0.0 1.7 1 0 0 1 1 1 0 Putative NAD(P)-binding Gp_dh_N PF00044.19 gi|557693800|ref|YP_008796854.1| - 0.11 12.4 0.2 0.27 11.1 0.0 1.8 2 0 0 2 2 2 0 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Bac_GDH PF05088.7 gi|557693800|ref|YP_008796854.1| - 0.12 9.7 0.0 0.17 9.2 0.0 1.1 1 0 0 1 1 1 0 Bacterial NAD-glutamate dehydrogenase Pribosyltran PF00156.22 gi|557693801|ref|YP_008796855.1| - 3e-22 78.6 0.3 4.6e-22 78.0 0.2 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.1 gi|557693801|ref|YP_008796855.1| - 4.3e-06 26.0 0.0 6.2e-06 25.5 0.0 1.2 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.1 gi|557693801|ref|YP_008796855.1| - 0.029 13.6 0.0 0.049 12.9 0.0 1.3 1 0 0 1 1 1 0 Phosphoribosyl transferase Radical_SAM PF04055.16 gi|557693802|ref|YP_008796856.1| - 2.2e-24 86.4 0.0 6e-24 85.0 0.0 1.7 2 0 0 2 2 2 1 Radical SAM superfamily UPF0004 PF00919.15 gi|557693802|ref|YP_008796856.1| - 2e-20 72.4 0.0 3.4e-20 71.6 0.0 1.3 1 0 0 1 1 1 1 Uncharacterized protein family UPF0004 TRAM PF01938.15 gi|557693802|ref|YP_008796856.1| - 4.8e-09 35.8 0.1 9.7e-09 34.8 0.0 1.5 1 0 0 1 1 1 1 TRAM domain Copper-bind PF00127.15 gi|557693803|ref|YP_008796857.1| - 2.8e-06 27.4 0.2 3.1e-05 24.1 0.2 2.0 1 1 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family Cupredoxin_1 PF13473.1 gi|557693803|ref|YP_008796857.1| - 0.00028 20.7 0.0 0.00041 20.2 0.0 1.3 1 0 0 1 1 1 1 Cupredoxin-like domain F420_oxidored PF03807.12 gi|557693804|ref|YP_008796858.1| - 7.2e-15 55.1 1.1 1.5e-14 54.2 0.4 1.8 1 1 1 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent NAD_Gly3P_dh_N PF01210.18 gi|557693804|ref|YP_008796858.1| - 3.6e-07 30.0 0.4 7.1e-07 29.0 0.3 1.5 1 1 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ApbA PF02558.11 gi|557693804|ref|YP_008796858.1| - 3.5e-05 23.2 0.1 4.6e-05 22.8 0.0 1.1 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA NAD_binding_10 PF13460.1 gi|557693804|ref|YP_008796858.1| - 0.00012 22.1 5.9 0.0058 16.6 4.1 2.3 1 1 0 1 1 1 1 NADH(P)-binding adh_short PF00106.20 gi|557693804|ref|YP_008796858.1| - 0.00042 20.2 1.5 0.00042 20.2 1.1 1.8 2 0 0 2 2 2 1 short chain dehydrogenase NAD_binding_2 PF03446.10 gi|557693804|ref|YP_008796858.1| - 0.00055 19.7 0.2 0.00086 19.1 0.2 1.5 1 1 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase IlvN PF07991.7 gi|557693804|ref|YP_008796858.1| - 0.001 18.5 0.1 0.002 17.5 0.0 1.5 1 1 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain 3HCDH_N PF02737.13 gi|557693804|ref|YP_008796858.1| - 0.0015 18.2 1.7 0.0025 17.5 1.2 1.6 1 1 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain PDH PF02153.12 gi|557693804|ref|YP_008796858.1| - 0.015 14.1 0.4 0.039 12.8 0.1 1.7 1 1 1 2 2 2 0 Prephenate dehydrogenase NmrA PF05368.8 gi|557693804|ref|YP_008796858.1| - 0.018 14.3 0.7 0.018 14.3 0.5 1.6 2 0 0 2 2 2 0 NmrA-like family RmlD_sub_bind PF04321.12 gi|557693804|ref|YP_008796858.1| - 0.047 12.5 0.4 0.068 12.0 0.3 1.2 1 0 0 1 1 1 0 RmlD substrate binding domain KR PF08659.5 gi|557693804|ref|YP_008796858.1| - 0.065 12.9 1.9 0.072 12.7 0.5 1.6 2 0 0 2 2 2 0 KR domain Semialdhyde_dh PF01118.19 gi|557693804|ref|YP_008796858.1| - 0.078 13.2 2.3 0.32 11.2 0.2 2.3 1 1 2 3 3 3 0 Semialdehyde dehydrogenase, NAD binding domain PGM_PMM_I PF02878.11 gi|557693805|ref|YP_008796859.1| - 4.4e-34 116.9 0.0 1e-33 115.7 0.0 1.6 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_III PF02880.11 gi|557693805|ref|YP_008796859.1| - 3.5e-23 81.7 0.1 6.8e-23 80.8 0.1 1.5 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_II PF02879.11 gi|557693805|ref|YP_008796859.1| - 1.1e-21 77.1 0.0 3e-21 75.6 0.0 1.8 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_IV PF00408.15 gi|557693805|ref|YP_008796859.1| - 1.7e-06 27.9 0.0 4.6e-06 26.5 0.0 1.7 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain SNARE_assoc PF09335.6 gi|557693806|ref|YP_008796860.1| - 8.2e-16 58.3 1.2 8.2e-16 58.3 0.9 2.6 2 1 1 3 3 3 1 SNARE associated Golgi protein Sm_multidrug_ex PF06695.6 gi|557693806|ref|YP_008796860.1| - 0.019 15.1 6.6 6.5 6.9 2.7 3.3 1 1 2 3 3 3 0 Putative small multi-drug export protein DZR PF12773.2 gi|557693808|ref|YP_008796862.1| - 0.00088 19.0 0.7 0.0013 18.5 0.5 1.2 1 0 0 1 1 1 1 Double zinc ribbon zf-RING_4 PF14570.1 gi|557693808|ref|YP_008796862.1| - 0.00089 18.7 3.7 0.0012 18.3 2.5 1.1 1 0 0 1 1 1 1 RING/Ubox like zinc-binding domain zf-ribbon_3 PF13248.1 gi|557693808|ref|YP_008796862.1| - 0.00091 18.3 1.1 0.0012 17.9 0.7 1.3 1 0 0 1 1 1 1 zinc-ribbon domain zf-C4H2 PF10146.4 gi|557693808|ref|YP_008796862.1| - 0.001 19.1 3.6 0.0012 18.9 2.5 1.0 1 0 0 1 1 1 1 Zinc finger-containing protein zinc_ribbon_2 PF13240.1 gi|557693808|ref|YP_008796862.1| - 0.0014 18.0 2.3 0.0022 17.4 1.6 1.3 1 0 0 1 1 1 1 zinc-ribbon domain UPF0547 PF10571.4 gi|557693808|ref|YP_008796862.1| - 0.0039 16.8 2.8 0.0075 15.9 1.9 1.5 1 1 0 1 1 1 1 Uncharacterised protein family UPF0547 DUF4131 PF13567.1 gi|557693808|ref|YP_008796862.1| - 0.05 13.0 0.7 0.055 12.8 0.5 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) zf-FCS PF06467.9 gi|557693808|ref|YP_008796862.1| - 0.12 11.9 1.0 0.12 11.9 0.7 2.2 1 1 1 2 2 2 0 MYM-type Zinc finger with FCS sequence motif NfeD PF01957.13 gi|557693808|ref|YP_008796862.1| - 0.21 11.7 3.7 0.35 11.0 2.4 1.5 1 1 0 1 1 1 0 NfeD-like C-terminal, partner-binding DUF2244 PF10003.4 gi|557693808|ref|YP_008796862.1| - 0.6 9.4 5.2 0.78 9.1 3.6 1.1 1 0 0 1 1 1 0 Integral membrane protein (DUF2244) Tetraspannin PF00335.15 gi|557693808|ref|YP_008796862.1| - 1.8 7.7 5.2 4.6 6.4 0.2 2.0 1 1 1 2 2 2 0 Tetraspanin family Pex24p PF06398.6 gi|557693808|ref|YP_008796862.1| - 3.2 6.4 5.0 3.7 6.2 3.5 1.0 1 0 0 1 1 1 0 Integral peroxisomal membrane peroxin zf-RING_3 PF14369.1 gi|557693808|ref|YP_008796862.1| - 4.1 7.4 6.3 23 5.0 3.7 2.0 1 1 1 2 2 2 0 zinc-finger SdpI PF13630.1 gi|557693808|ref|YP_008796862.1| - 4.4 7.0 9.8 8 6.2 1.6 1.9 1 1 1 2 2 2 0 SdpI/YhfL protein family HAD_2 PF13419.1 gi|557693809|ref|YP_008796863.1| - 6.5e-27 94.8 0.1 1.4e-26 93.7 0.1 1.6 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|557693809|ref|YP_008796863.1| - 1.8e-14 54.7 2.1 1.4e-13 51.7 0.2 3.0 3 1 0 3 3 1 1 haloacid dehalogenase-like hydrolase T2SE PF00437.15 gi|557693809|ref|YP_008796863.1| - 2e-12 46.6 0.0 5.2e-12 45.2 0.0 1.6 1 0 0 1 1 1 1 Type II/IV secretion system protein Hydrolase_like PF13242.1 gi|557693809|ref|YP_008796863.1| - 2.7e-12 46.1 0.0 1.2e-11 44.1 0.0 2.1 2 0 0 2 2 1 1 HAD-hyrolase-like HAD PF12710.2 gi|557693809|ref|YP_008796863.1| - 1.6e-10 41.4 0.1 1.6e-09 38.1 0.0 2.4 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase KH_1 PF00013.24 gi|557693809|ref|YP_008796863.1| - 2.8e-07 30.0 0.3 2.8e-07 30.0 0.2 2.3 2 0 0 2 2 2 1 KH domain NIF PF03031.13 gi|557693809|ref|YP_008796863.1| - 1.6e-06 27.8 0.1 0.00029 20.5 0.1 3.1 2 1 0 2 2 2 1 NLI interacting factor-like phosphatase AAA_17 PF13207.1 gi|557693809|ref|YP_008796863.1| - 3.7e-05 24.5 3.3 5.5e-05 23.9 0.2 3.0 3 1 0 3 3 1 1 AAA domain PIN_4 PF13638.1 gi|557693809|ref|YP_008796863.1| - 5.1e-05 23.3 0.8 0.011 15.8 0.0 3.1 2 1 0 2 2 2 1 PIN domain KH_3 PF13014.1 gi|557693809|ref|YP_008796863.1| - 5.2e-05 22.7 0.2 0.0003 20.3 0.0 2.2 2 0 0 2 2 2 1 KH domain AAA_33 PF13671.1 gi|557693809|ref|YP_008796863.1| - 7.2e-05 22.6 0.0 0.012 15.5 0.0 3.1 3 1 0 3 3 2 1 AAA domain AAA_22 PF13401.1 gi|557693809|ref|YP_008796863.1| - 0.00017 21.7 0.7 0.066 13.3 0.0 3.3 4 0 0 4 4 2 1 AAA domain Put_Phosphatase PF06888.7 gi|557693809|ref|YP_008796863.1| - 0.00023 20.3 0.1 0.014 14.5 0.1 2.4 2 0 0 2 2 2 1 Putative Phosphatase AAA_18 PF13238.1 gi|557693809|ref|YP_008796863.1| - 0.00029 21.1 0.6 0.002 18.4 0.0 2.7 3 0 0 3 3 2 1 AAA domain Hydrolase_3 PF08282.7 gi|557693809|ref|YP_008796863.1| - 0.00033 20.3 0.1 8.1 5.9 0.0 3.5 3 0 0 3 3 3 0 haloacid dehalogenase-like hydrolase AAA_25 PF13481.1 gi|557693809|ref|YP_008796863.1| - 0.00085 18.7 0.1 0.0037 16.6 0.0 2.2 3 0 0 3 3 2 1 AAA domain AAA PF00004.24 gi|557693809|ref|YP_008796863.1| - 0.0013 18.8 0.7 0.2 11.8 0.0 3.3 3 0 0 3 3 3 1 ATPase family associated with various cellular activities (AAA) ATP_bind_1 PF03029.12 gi|557693809|ref|YP_008796863.1| - 0.0014 18.2 1.7 0.032 13.7 0.0 2.7 3 0 0 3 3 2 1 Conserved hypothetical ATP binding protein Acid_phosphat_B PF03767.9 gi|557693809|ref|YP_008796863.1| - 0.0018 17.6 0.0 0.0038 16.6 0.0 1.4 1 0 0 1 1 1 1 HAD superfamily, subfamily IIIB (Acid phosphatase) AAA_16 PF13191.1 gi|557693809|ref|YP_008796863.1| - 0.0019 18.1 0.4 0.011 15.7 0.0 2.4 3 0 0 3 3 3 1 AAA ATPase domain AAA_19 PF13245.1 gi|557693809|ref|YP_008796863.1| - 0.0026 17.4 0.1 0.032 13.9 0.0 2.8 3 0 0 3 3 2 1 Part of AAA domain Hydrolase_6 PF13344.1 gi|557693809|ref|YP_008796863.1| - 0.0031 17.3 0.0 0.034 14.0 0.0 2.8 2 1 0 2 2 1 1 Haloacid dehalogenase-like hydrolase KH_4 PF13083.1 gi|557693809|ref|YP_008796863.1| - 0.0035 16.9 0.4 0.016 14.8 0.2 2.2 2 0 0 2 2 1 1 KH domain Sigma54_activ_2 PF14532.1 gi|557693809|ref|YP_008796863.1| - 0.0039 17.2 0.0 0.063 13.3 0.0 2.8 2 0 0 2 2 2 1 Sigma-54 interaction domain ABC_tran PF00005.22 gi|557693809|ref|YP_008796863.1| - 0.0043 17.3 0.1 0.028 14.6 0.0 2.3 2 0 0 2 2 2 1 ABC transporter AAA_14 PF13173.1 gi|557693809|ref|YP_008796863.1| - 0.0046 16.8 0.0 0.013 15.3 0.0 1.8 1 0 0 1 1 1 1 AAA domain AAA_10 PF12846.2 gi|557693809|ref|YP_008796863.1| - 0.0048 16.3 0.1 0.024 14.0 0.0 2.2 3 0 0 3 3 3 1 AAA-like domain KH_2 PF07650.12 gi|557693809|ref|YP_008796863.1| - 0.0075 15.8 1.3 0.032 13.8 0.9 2.2 1 0 0 1 1 1 1 KH domain SRP54 PF00448.17 gi|557693809|ref|YP_008796863.1| - 0.0098 15.3 0.0 0.21 11.0 0.0 2.6 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain DUF705 PF05152.7 gi|557693809|ref|YP_008796863.1| - 0.012 14.6 0.0 0.046 12.6 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF705) AAA_29 PF13555.1 gi|557693809|ref|YP_008796863.1| - 0.012 15.1 0.0 0.033 13.7 0.0 1.7 1 0 0 1 1 1 0 P-loop containing region of AAA domain IstB_IS21 PF01695.12 gi|557693809|ref|YP_008796863.1| - 0.014 14.7 0.0 0.034 13.5 0.0 1.6 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_5 PF07728.9 gi|557693809|ref|YP_008796863.1| - 0.014 15.0 0.0 0.051 13.3 0.0 2.0 2 0 0 2 2 1 0 AAA domain (dynein-related subfamily) Thymidylate_kin PF02223.12 gi|557693809|ref|YP_008796863.1| - 0.019 14.3 0.4 0.083 12.2 0.0 2.3 3 0 0 3 3 2 0 Thymidylate kinase ADH_zinc_N PF00107.21 gi|557693809|ref|YP_008796863.1| - 0.02 14.4 0.6 1.6 8.3 0.1 2.5 2 0 0 2 2 2 0 Zinc-binding dehydrogenase AAA_30 PF13604.1 gi|557693809|ref|YP_008796863.1| - 0.022 14.3 0.4 0.25 10.9 0.0 2.7 3 0 0 3 3 2 0 AAA domain PPV_E1_C PF00519.12 gi|557693809|ref|YP_008796863.1| - 0.022 13.3 0.0 0.035 12.7 0.0 1.2 1 0 0 1 1 1 0 Papillomavirus helicase AAA_28 PF13521.1 gi|557693809|ref|YP_008796863.1| - 0.025 14.5 0.7 0.86 9.5 0.0 3.1 3 0 0 3 3 3 0 AAA domain ArgK PF03308.11 gi|557693809|ref|YP_008796863.1| - 0.026 13.2 0.0 0.056 12.2 0.0 1.5 1 0 0 1 1 1 0 ArgK protein FtsK_SpoIIIE PF01580.13 gi|557693809|ref|YP_008796863.1| - 0.028 13.9 0.0 0.12 11.8 0.0 2.0 1 0 0 1 1 1 0 FtsK/SpoIIIE family Zeta_toxin PF06414.7 gi|557693809|ref|YP_008796863.1| - 0.034 13.2 0.6 0.1 11.6 0.0 2.1 2 0 0 2 2 2 0 Zeta toxin PIN PF01850.16 gi|557693809|ref|YP_008796863.1| - 0.034 14.4 1.0 0.094 13.0 0.1 2.4 2 0 0 2 2 1 0 PIN domain KTI12 PF08433.5 gi|557693809|ref|YP_008796863.1| - 0.044 12.9 0.3 0.13 11.4 0.0 1.9 2 0 0 2 2 1 0 Chromatin associated protein KTI12 NACHT PF05729.7 gi|557693809|ref|YP_008796863.1| - 0.059 13.0 0.0 0.26 10.9 0.0 2.1 1 0 0 1 1 1 0 NACHT domain PG_binding_2 PF08823.6 gi|557693809|ref|YP_008796863.1| - 0.077 13.1 0.2 0.48 10.5 0.1 2.2 2 0 0 2 2 2 0 Putative peptidoglycan binding domain RNA_helicase PF00910.17 gi|557693809|ref|YP_008796863.1| - 0.13 12.4 0.0 0.36 11.0 0.0 1.8 1 0 0 1 1 1 0 RNA helicase Mg_chelatase PF01078.16 gi|557693809|ref|YP_008796863.1| - 0.19 10.8 1.4 0.39 9.8 0.0 2.0 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI Thiolase_N PF00108.18 gi|557693810|ref|YP_008796864.1| - 8.7e-14 51.1 1.1 9e-11 41.2 0.2 2.2 1 1 1 2 2 2 2 Thiolase, N-terminal domain Thiolase_C PF02803.13 gi|557693810|ref|YP_008796864.1| - 4e-11 42.4 0.1 1.3e-08 34.2 0.0 2.9 2 0 0 2 2 2 2 Thiolase, C-terminal domain ACP_syn_III PF08545.5 gi|557693810|ref|YP_008796864.1| - 8.8e-07 28.5 1.6 5.1e-05 22.8 0.2 2.4 2 0 0 2 2 2 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III ketoacyl-synt PF00109.21 gi|557693810|ref|YP_008796864.1| - 0.00014 21.4 12.1 0.00014 21.3 3.1 3.3 3 1 1 4 4 4 1 Beta-ketoacyl synthase, N-terminal domain FAE1_CUT1_RppA PF08392.7 gi|557693810|ref|YP_008796864.1| - 0.0032 16.5 0.0 0.0052 15.8 0.0 1.3 1 0 0 1 1 1 1 FAE1/Type III polyketide synthase-like protein Ketoacyl-synt_C PF02801.17 gi|557693810|ref|YP_008796864.1| - 0.0036 17.1 0.8 0.92 9.3 0.1 3.1 3 1 0 3 3 3 1 Beta-ketoacyl synthase, C-terminal domain HMG_CoA_synt_N PF01154.12 gi|557693810|ref|YP_008796864.1| - 0.11 11.9 0.1 0.35 10.4 0.1 1.7 1 1 0 1 1 1 0 Hydroxymethylglutaryl-coenzyme A synthase N terminal DUF35 PF01796.12 gi|557693811|ref|YP_008796865.1| - 1.6e-15 57.1 0.0 2.6e-15 56.4 0.0 1.4 1 0 0 1 1 1 1 DUF35 OB-fold domain DUF35_N PF12172.3 gi|557693811|ref|YP_008796865.1| - 1e-06 28.4 0.2 1e-06 28.4 0.1 1.6 2 0 0 2 2 2 1 Rubredoxin-like zinc ribbon domain (DUF35_N) Pyridox_oxidase PF01243.15 gi|557693812|ref|YP_008796866.1| - 3.3e-19 68.6 0.1 4.3e-19 68.3 0.0 1.1 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Pyridox_ox_2 PF12900.2 gi|557693812|ref|YP_008796866.1| - 1.5e-11 44.3 0.0 1.9e-11 43.9 0.0 1.1 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Amidohydro_1 PF01979.15 gi|557693813|ref|YP_008796867.1| - 9.6e-54 183.2 0.0 1.3e-53 182.7 0.0 1.2 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_4 PF13147.1 gi|557693813|ref|YP_008796867.1| - 8.8e-18 65.3 0.0 3.2e-13 50.3 0.0 2.2 2 0 0 2 2 2 2 Amidohydrolase Amidohydro_3 PF07969.6 gi|557693813|ref|YP_008796867.1| - 1e-13 51.3 0.6 9.6e-11 41.5 0.0 2.2 2 0 0 2 2 2 2 Amidohydrolase family Amidohydro_5 PF13594.1 gi|557693813|ref|YP_008796867.1| - 2.6e-13 49.5 0.3 2.6e-12 46.3 0.0 2.5 1 1 1 2 2 2 1 Amidohydrolase A_deaminase PF00962.17 gi|557693813|ref|YP_008796867.1| - 0.0033 16.3 0.0 0.0075 15.2 0.0 1.6 1 1 0 1 1 1 1 Adenosine/AMP deaminase Bac_luciferase PF00296.15 gi|557693814|ref|YP_008796868.1| - 1.7e-55 188.3 0.4 2e-55 188.0 0.3 1.0 1 0 0 1 1 1 1 Luciferase-like monooxygenase Amidohydro_1 PF01979.15 gi|557693815|ref|YP_008796869.1| - 2.1e-34 119.6 0.0 2.6e-34 119.3 0.0 1.1 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.6 gi|557693815|ref|YP_008796869.1| - 3.9e-14 52.6 0.2 1.6e-13 50.7 0.0 1.9 2 0 0 2 2 2 1 Amidohydrolase family Amidohydro_4 PF13147.1 gi|557693815|ref|YP_008796869.1| - 6.8e-11 42.7 0.4 2.5e-09 37.5 0.3 2.4 1 1 0 1 1 1 1 Amidohydrolase Amidohydro_5 PF13594.1 gi|557693815|ref|YP_008796869.1| - 4.3e-09 36.0 0.1 1.8e-08 34.0 0.0 2.1 2 0 0 2 2 2 1 Amidohydrolase Ald_Xan_dh_C2 PF02738.13 gi|557693816|ref|YP_008796870.1| - 1.2e-118 396.8 0.0 1.5e-118 396.4 0.0 1.1 1 0 0 1 1 1 1 Molybdopterin-binding domain of aldehyde dehydrogenase Ald_Xan_dh_C PF01315.17 gi|557693816|ref|YP_008796870.1| - 1.2e-18 67.2 0.0 2.8e-18 66.0 0.0 1.7 1 0 0 1 1 1 1 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain MASE1 PF05231.9 gi|557693817|ref|YP_008796871.1| - 2e-06 27.0 24.5 7.2e-06 25.2 17.3 1.6 1 1 0 1 1 1 1 MASE1 CbiQ PF02361.11 gi|557693818|ref|YP_008796872.1| - 3.9e-27 95.2 15.8 3.9e-27 95.2 10.9 1.4 2 0 0 2 2 2 1 Cobalt transport protein Amidohydro_5 PF13594.1 gi|557693819|ref|YP_008796873.1| - 1.7e-10 40.5 1.4 2.5e-09 36.8 0.1 2.4 2 0 0 2 2 2 1 Amidohydrolase Amidohydro_4 PF13147.1 gi|557693819|ref|YP_008796873.1| - 1.6e-08 34.9 0.0 0.0012 18.9 0.0 2.3 2 0 0 2 2 2 2 Amidohydrolase Amidohydro_1 PF01979.15 gi|557693819|ref|YP_008796873.1| - 8.4e-05 22.3 0.1 0.13 11.9 0.0 2.4 2 0 0 2 2 2 2 Amidohydrolase family ABC_tran PF00005.22 gi|557693820|ref|YP_008796874.1| - 6.4e-28 97.7 0.0 1.1e-27 97.0 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|557693820|ref|YP_008796874.1| - 1.6e-09 38.1 0.1 0.00025 21.0 0.0 2.2 1 1 0 2 2 2 2 AAA domain AAA_22 PF13401.1 gi|557693820|ref|YP_008796874.1| - 2.5e-06 27.6 0.1 9.3e-05 22.5 0.1 2.3 1 1 0 1 1 1 1 AAA domain ATP-synt_ab PF00006.20 gi|557693820|ref|YP_008796874.1| - 0.00014 21.4 0.2 0.00082 18.9 0.1 2.0 1 1 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain AAA_18 PF13238.1 gi|557693820|ref|YP_008796874.1| - 0.00029 21.1 0.1 0.008 16.4 0.0 2.2 1 1 2 3 3 3 1 AAA domain AAA_29 PF13555.1 gi|557693820|ref|YP_008796874.1| - 0.0004 19.8 0.1 0.00074 18.9 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.14 gi|557693820|ref|YP_008796874.1| - 0.00066 18.9 0.2 0.0065 15.7 0.1 2.2 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_13 PF13166.1 gi|557693820|ref|YP_008796874.1| - 0.0012 17.3 0.0 0.13 10.6 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_23 PF13476.1 gi|557693820|ref|YP_008796874.1| - 0.0016 18.7 0.1 0.0027 18.0 0.1 1.3 1 0 0 1 1 1 1 AAA domain Mg_chelatase PF01078.16 gi|557693820|ref|YP_008796874.1| - 0.0018 17.4 0.0 0.0031 16.7 0.0 1.3 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI AAA_30 PF13604.1 gi|557693820|ref|YP_008796874.1| - 0.0021 17.6 0.1 0.0082 15.7 0.1 1.9 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|557693820|ref|YP_008796874.1| - 0.0023 17.8 0.3 0.0096 15.8 0.2 2.0 1 1 0 1 1 1 1 AAA domain AAA_10 PF12846.2 gi|557693820|ref|YP_008796874.1| - 0.0026 17.2 0.0 0.0033 16.9 0.0 1.2 1 0 0 1 1 1 1 AAA-like domain AAA_5 PF07728.9 gi|557693820|ref|YP_008796874.1| - 0.0026 17.4 0.1 0.035 13.8 0.0 2.3 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_16 PF13191.1 gi|557693820|ref|YP_008796874.1| - 0.0032 17.4 0.1 0.0077 16.2 0.1 1.8 1 1 0 1 1 1 1 AAA ATPase domain AAA_25 PF13481.1 gi|557693820|ref|YP_008796874.1| - 0.0034 16.8 0.1 0.12 11.7 0.0 2.4 2 1 0 2 2 2 1 AAA domain NACHT PF05729.7 gi|557693820|ref|YP_008796874.1| - 0.0035 17.0 0.2 0.011 15.3 0.1 1.9 2 0 0 2 2 2 1 NACHT domain AAA_17 PF13207.1 gi|557693820|ref|YP_008796874.1| - 0.0044 17.8 0.4 0.012 16.4 0.2 1.9 1 1 0 1 1 1 1 AAA domain KaiC PF06745.8 gi|557693820|ref|YP_008796874.1| - 0.008 15.3 0.3 0.4 9.7 0.0 2.2 2 0 0 2 2 2 1 KaiC NTPase_1 PF03266.10 gi|557693820|ref|YP_008796874.1| - 0.0085 15.8 0.2 0.049 13.3 0.0 2.1 2 0 0 2 2 2 1 NTPase AAA PF00004.24 gi|557693820|ref|YP_008796874.1| - 0.0088 16.2 0.1 0.028 14.6 0.1 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) NB-ARC PF00931.17 gi|557693820|ref|YP_008796874.1| - 0.01 14.6 0.1 0.019 13.8 0.0 1.5 2 0 0 2 2 2 0 NB-ARC domain HAD PF12710.2 gi|557693820|ref|YP_008796874.1| - 0.012 15.7 0.0 0.041 14.0 0.0 1.8 1 1 1 2 2 2 0 haloacid dehalogenase-like hydrolase AAA_15 PF13175.1 gi|557693820|ref|YP_008796874.1| - 0.014 14.4 0.1 0.28 10.1 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain SRP54 PF00448.17 gi|557693820|ref|YP_008796874.1| - 0.018 14.4 0.0 0.042 13.3 0.0 1.6 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain UPF0079 PF02367.12 gi|557693820|ref|YP_008796874.1| - 0.021 14.4 0.1 0.04 13.5 0.0 1.4 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 Zot PF05707.7 gi|557693820|ref|YP_008796874.1| - 0.031 13.7 0.3 0.11 11.9 0.2 1.8 1 1 0 1 1 1 0 Zonular occludens toxin (Zot) AAA_19 PF13245.1 gi|557693820|ref|YP_008796874.1| - 0.032 14.0 0.1 0.4 10.4 0.1 2.3 2 0 0 2 2 2 0 Part of AAA domain RecA PF00154.16 gi|557693820|ref|YP_008796874.1| - 0.032 13.3 0.0 0.24 10.3 0.0 2.0 2 0 0 2 2 2 0 recA bacterial DNA recombination protein MobB PF03205.9 gi|557693820|ref|YP_008796874.1| - 0.034 13.8 0.7 0.086 12.5 0.1 1.9 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B PduV-EutP PF10662.4 gi|557693820|ref|YP_008796874.1| - 0.038 13.4 0.0 0.086 12.3 0.0 1.6 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation Arch_ATPase PF01637.13 gi|557693820|ref|YP_008796874.1| - 0.039 13.6 0.2 0.34 10.5 0.0 2.1 2 1 0 2 2 2 0 Archaeal ATPase G-alpha PF00503.15 gi|557693820|ref|YP_008796874.1| - 0.049 12.3 0.0 0.065 11.9 0.0 1.6 1 1 0 1 1 1 0 G-protein alpha subunit T2SE PF00437.15 gi|557693820|ref|YP_008796874.1| - 0.061 12.2 0.3 0.11 11.3 0.0 1.6 2 0 0 2 2 1 0 Type II/IV secretion system protein DUF258 PF03193.11 gi|557693820|ref|YP_008796874.1| - 0.067 12.3 0.1 0.13 11.4 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function, DUF258 Pox_A32 PF04665.7 gi|557693820|ref|YP_008796874.1| - 0.068 12.4 0.2 7 5.8 0.0 2.1 2 0 0 2 2 2 0 Poxvirus A32 protein Sigma54_activ_2 PF14532.1 gi|557693820|ref|YP_008796874.1| - 0.1 12.6 0.0 0.7 9.9 0.0 2.0 2 0 0 2 2 2 0 Sigma-54 interaction domain AAA_24 PF13479.1 gi|557693820|ref|YP_008796874.1| - 0.12 11.9 0.2 1.3 8.5 0.0 2.2 2 0 0 2 2 2 0 AAA domain KTI12 PF08433.5 gi|557693820|ref|YP_008796874.1| - 0.12 11.5 0.0 0.3 10.2 0.0 1.7 2 0 0 2 2 2 0 Chromatin associated protein KTI12 Zeta_toxin PF06414.7 gi|557693820|ref|YP_008796874.1| - 0.12 11.4 0.1 0.39 9.7 0.0 1.7 2 0 0 2 2 2 0 Zeta toxin GTP_EFTU PF00009.22 gi|557693820|ref|YP_008796874.1| - 0.12 11.7 0.6 0.39 10.1 0.1 1.9 2 0 0 2 2 2 0 Elongation factor Tu GTP binding domain AAA_28 PF13521.1 gi|557693820|ref|YP_008796874.1| - 0.13 12.1 0.9 0.89 9.5 0.2 2.2 1 1 0 2 2 2 0 AAA domain ABC_tran PF00005.22 gi|557693821|ref|YP_008796875.1| - 3.1e-28 98.7 0.0 4.2e-28 98.3 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|557693821|ref|YP_008796875.1| - 1.3e-10 41.7 0.0 4.9e-06 26.7 0.0 2.2 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|557693821|ref|YP_008796875.1| - 6e-07 28.9 0.0 1.5e-06 27.6 0.0 1.6 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_25 PF13481.1 gi|557693821|ref|YP_008796875.1| - 3.1e-06 26.7 0.4 4.8e-05 22.8 0.0 2.2 2 1 0 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|557693821|ref|YP_008796875.1| - 4.8e-05 23.5 0.3 0.002 18.2 0.2 2.8 2 1 0 2 2 2 1 AAA domain AAA_23 PF13476.1 gi|557693821|ref|YP_008796875.1| - 5.8e-05 23.4 0.1 0.00011 22.6 0.0 1.5 1 1 0 1 1 1 1 AAA domain T2SE PF00437.15 gi|557693821|ref|YP_008796875.1| - 0.00017 20.6 0.0 0.00058 18.8 0.0 1.9 2 1 0 3 3 3 1 Type II/IV secretion system protein IstB_IS21 PF01695.12 gi|557693821|ref|YP_008796875.1| - 0.00027 20.4 0.2 0.011 15.1 0.0 2.1 2 0 0 2 2 2 1 IstB-like ATP binding protein AAA_29 PF13555.1 gi|557693821|ref|YP_008796875.1| - 0.00078 18.9 0.0 0.0015 18.0 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|557693821|ref|YP_008796875.1| - 0.0011 18.9 0.0 0.0018 18.2 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_17 PF13207.1 gi|557693821|ref|YP_008796875.1| - 0.0014 19.4 0.4 0.0035 18.1 0.2 2.0 1 1 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|557693821|ref|YP_008796875.1| - 0.0035 17.0 0.4 0.012 15.3 0.1 2.0 2 0 0 2 2 2 1 Part of AAA domain AAA_10 PF12846.2 gi|557693821|ref|YP_008796875.1| - 0.0065 15.9 0.2 0.82 9.0 0.2 2.1 1 1 1 2 2 2 1 AAA-like domain AAA_18 PF13238.1 gi|557693821|ref|YP_008796875.1| - 0.0073 16.6 1.2 0.034 14.4 0.1 2.3 3 0 0 3 3 2 1 AAA domain NTPase_1 PF03266.10 gi|557693821|ref|YP_008796875.1| - 0.0079 15.9 1.3 0.043 13.5 0.1 2.1 2 0 0 2 2 2 1 NTPase AAA PF00004.24 gi|557693821|ref|YP_008796875.1| - 0.0092 16.1 1.0 0.12 12.5 0.8 2.5 1 1 1 2 2 2 1 ATPase family associated with various cellular activities (AAA) Peripla_BP_4 PF13407.1 gi|557693821|ref|YP_008796875.1| - 0.014 14.7 0.0 0.024 14.0 0.0 1.3 1 0 0 1 1 1 0 Periplasmic binding protein domain UPF0079 PF02367.12 gi|557693821|ref|YP_008796875.1| - 0.014 15.0 0.0 0.029 13.9 0.0 1.6 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 AAA_28 PF13521.1 gi|557693821|ref|YP_008796875.1| - 0.014 15.3 0.2 0.032 14.2 0.1 1.6 1 0 0 1 1 1 0 AAA domain DUF258 PF03193.11 gi|557693821|ref|YP_008796875.1| - 0.015 14.5 0.0 0.048 12.8 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function, DUF258 PhoH PF02562.11 gi|557693821|ref|YP_008796875.1| - 0.016 14.4 0.0 0.032 13.4 0.0 1.4 1 0 0 1 1 1 0 PhoH-like protein AAA_14 PF13173.1 gi|557693821|ref|YP_008796875.1| - 0.02 14.7 0.4 0.1 12.5 0.3 2.4 1 1 0 1 1 1 0 AAA domain SbcCD_C PF13558.1 gi|557693821|ref|YP_008796875.1| - 0.027 14.3 0.0 0.18 11.7 0.0 2.1 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit ABC_ATPase PF09818.4 gi|557693821|ref|YP_008796875.1| - 0.03 12.9 0.4 5.1 5.5 0.0 2.5 2 1 0 2 2 2 0 Predicted ATPase of the ABC class Arch_ATPase PF01637.13 gi|557693821|ref|YP_008796875.1| - 0.033 13.8 0.0 0.063 12.9 0.0 1.5 1 1 0 1 1 1 0 Archaeal ATPase MobB PF03205.9 gi|557693821|ref|YP_008796875.1| - 0.054 13.2 1.5 0.14 11.8 0.2 2.2 2 1 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B KaiC PF06745.8 gi|557693821|ref|YP_008796875.1| - 0.063 12.3 0.6 0.41 9.7 0.1 2.2 2 1 0 2 2 2 0 KaiC AAA_30 PF13604.1 gi|557693821|ref|YP_008796875.1| - 0.067 12.7 0.1 0.25 10.8 0.0 1.9 2 0 0 2 2 2 0 AAA domain MMR_HSR1 PF01926.18 gi|557693821|ref|YP_008796875.1| - 0.07 13.0 0.0 0.15 12.0 0.0 1.7 1 1 0 1 1 1 0 50S ribosome-binding GTPase SRP54 PF00448.17 gi|557693821|ref|YP_008796875.1| - 0.091 12.1 0.2 0.27 10.6 0.0 1.8 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain cobW PF02492.14 gi|557693821|ref|YP_008796875.1| - 0.1 12.0 0.6 0.27 10.6 0.1 1.9 2 1 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain PduV-EutP PF10662.4 gi|557693821|ref|YP_008796875.1| - 0.1 12.0 0.1 0.26 10.7 0.0 1.6 2 0 0 2 2 1 0 Ethanolamine utilisation - propanediol utilisation RNA_helicase PF00910.17 gi|557693821|ref|YP_008796875.1| - 0.11 12.6 0.0 0.23 11.6 0.0 1.6 1 0 0 1 1 1 0 RNA helicase ATP-synt_ab PF00006.20 gi|557693821|ref|YP_008796875.1| - 0.13 11.7 0.1 0.19 11.2 0.0 1.3 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain UbiD PF01977.11 gi|557693822|ref|YP_008796876.1| - 9.2e-114 380.0 0.0 1.1e-113 379.8 0.0 1.0 1 0 0 1 1 1 1 3-octaprenyl-4-hydroxybenzoate carboxy-lyase Bac_luciferase PF00296.15 gi|557693823|ref|YP_008796877.1| - 3.4e-52 177.4 0.0 3.7e-52 177.3 0.0 1.0 1 0 0 1 1 1 1 Luciferase-like monooxygenase DUF461 PF04314.8 gi|557693824|ref|YP_008796878.1| - 8.2e-14 51.2 0.4 1.7e-13 50.2 0.3 1.5 1 1 0 1 1 1 1 Protein of unknown function (DUF461) GTP_EFTU PF00009.22 gi|557693825|ref|YP_008796879.1| - 2.3e-52 177.2 0.0 4.4e-52 176.2 0.0 1.4 2 0 0 2 2 2 1 Elongation factor Tu GTP binding domain GTP_EFTU_D3 PF03143.12 gi|557693825|ref|YP_008796879.1| - 1.5e-27 95.6 0.1 4.2e-27 94.2 0.1 1.8 1 0 0 1 1 1 1 Elongation factor Tu C-terminal domain GTP_EFTU_D2 PF03144.20 gi|557693825|ref|YP_008796879.1| - 1.7e-17 63.2 1.0 5.1e-17 61.7 0.2 2.2 2 0 0 2 2 2 1 Elongation factor Tu domain 2 GTP_EFTU_D4 PF14578.1 gi|557693825|ref|YP_008796879.1| - 2e-06 27.3 1.4 5.1e-06 26.0 0.9 1.7 1 0 0 1 1 1 1 Elongation factor Tu domain 4 MMR_HSR1 PF01926.18 gi|557693825|ref|YP_008796879.1| - 6.1e-05 22.9 0.0 0.00021 21.1 0.0 1.9 1 1 0 1 1 1 1 50S ribosome-binding GTPase Miro PF08477.8 gi|557693825|ref|YP_008796879.1| - 0.0049 17.3 0.1 0.044 14.2 0.1 2.3 1 1 0 1 1 1 1 Miro-like protein Gtr1_RagA PF04670.7 gi|557693825|ref|YP_008796879.1| - 0.027 13.6 0.1 0.47 9.5 0.0 2.5 1 1 0 1 1 1 0 Gtr1/RagA G protein conserved region DUF1724 PF08350.5 gi|557693825|ref|YP_008796879.1| - 0.15 11.5 0.1 1.7 8.2 0.1 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF1724) Ribosomal_S10 PF00338.17 gi|557693826|ref|YP_008796880.1| - 9.9e-28 95.8 0.5 1.1e-27 95.6 0.4 1.0 1 0 0 1 1 1 1 Ribosomal protein S10p/S20e ABC2_membrane_2 PF12679.2 gi|557693827|ref|YP_008796881.1| - 7.2e-13 48.0 13.9 8.7e-13 47.7 9.6 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|557693827|ref|YP_008796881.1| - 8.9e-09 34.8 18.7 1.3e-08 34.3 12.9 1.4 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.2 gi|557693827|ref|YP_008796881.1| - 4.4e-05 22.6 18.8 5.2e-05 22.4 13.0 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC_tran PF00005.22 gi|557693828|ref|YP_008796882.1| - 1.5e-26 93.3 0.0 1.7e-25 89.9 0.0 2.0 1 1 1 2 2 2 1 ABC transporter AAA_21 PF13304.1 gi|557693828|ref|YP_008796882.1| - 7.3e-14 52.4 0.0 7e-06 26.2 0.0 2.2 1 1 0 2 2 2 2 AAA domain DUF4162 PF13732.1 gi|557693828|ref|YP_008796882.1| - 3e-08 34.0 0.0 7e-08 32.8 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_23 PF13476.1 gi|557693828|ref|YP_008796882.1| - 5.5e-05 23.5 0.0 9.2e-05 22.8 0.0 1.4 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|557693828|ref|YP_008796882.1| - 8.6e-05 21.9 0.1 0.00018 20.9 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|557693828|ref|YP_008796882.1| - 0.00025 21.0 0.0 0.018 15.0 0.0 2.2 2 0 0 2 2 2 1 AAA ATPase domain AAA_10 PF12846.2 gi|557693828|ref|YP_008796882.1| - 0.00082 18.8 0.2 0.52 9.6 0.1 2.3 2 0 0 2 2 2 2 AAA-like domain SMC_N PF02463.14 gi|557693828|ref|YP_008796882.1| - 0.00083 18.6 0.0 0.032 13.4 0.1 2.2 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain MobB PF03205.9 gi|557693828|ref|YP_008796882.1| - 0.0013 18.4 0.1 0.0065 16.1 0.1 2.0 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_30 PF13604.1 gi|557693828|ref|YP_008796882.1| - 0.0051 16.4 0.2 0.026 14.1 0.0 2.0 2 1 0 2 2 2 1 AAA domain AAA PF00004.24 gi|557693828|ref|YP_008796882.1| - 0.0086 16.2 0.2 0.11 12.7 0.0 2.4 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_19 PF13245.1 gi|557693828|ref|YP_008796882.1| - 0.016 14.9 0.6 0.16 11.7 0.1 2.4 2 0 0 2 2 2 0 Part of AAA domain SRP54 PF00448.17 gi|557693828|ref|YP_008796882.1| - 0.022 14.2 0.1 0.041 13.3 0.0 1.5 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain ArgK PF03308.11 gi|557693828|ref|YP_008796882.1| - 0.025 13.3 0.1 0.043 12.5 0.0 1.3 1 0 0 1 1 1 0 ArgK protein Arch_ATPase PF01637.13 gi|557693828|ref|YP_008796882.1| - 0.026 14.2 0.2 0.18 11.5 0.0 2.1 2 0 0 2 2 2 0 Archaeal ATPase HMA PF00403.21 gi|557693828|ref|YP_008796882.1| - 0.031 14.3 0.6 0.067 13.3 0.4 1.5 1 0 0 1 1 1 0 Heavy-metal-associated domain AAA_33 PF13671.1 gi|557693828|ref|YP_008796882.1| - 0.032 14.0 0.2 0.12 12.2 0.1 2.2 1 1 0 1 1 1 0 AAA domain AAA_15 PF13175.1 gi|557693828|ref|YP_008796882.1| - 0.036 13.1 0.0 6 5.7 0.0 2.1 1 1 1 2 2 2 0 AAA ATPase domain AAA_17 PF13207.1 gi|557693828|ref|YP_008796882.1| - 0.041 14.7 0.6 0.35 11.6 0.1 2.4 2 1 1 3 3 3 0 AAA domain NTPase_1 PF03266.10 gi|557693828|ref|YP_008796882.1| - 0.043 13.5 0.5 0.21 11.2 0.0 2.2 2 1 0 2 2 2 0 NTPase T2SE PF00437.15 gi|557693828|ref|YP_008796882.1| - 0.065 12.1 1.1 0.16 10.8 0.3 1.8 2 0 0 2 2 2 0 Type II/IV secretion system protein AAA_22 PF13401.1 gi|557693828|ref|YP_008796882.1| - 0.071 13.2 0.3 0.37 10.9 0.1 2.3 1 1 0 2 2 2 0 AAA domain AAA_25 PF13481.1 gi|557693828|ref|YP_008796882.1| - 0.082 12.2 0.2 0.31 10.4 0.1 2.0 1 1 1 2 2 2 0 AAA domain TrwB_AAD_bind PF10412.4 gi|557693828|ref|YP_008796882.1| - 0.11 11.1 0.1 4.9 5.6 0.0 2.4 2 1 1 3 3 3 0 Type IV secretion-system coupling protein DNA-binding domain cobW PF02492.14 gi|557693828|ref|YP_008796882.1| - 0.12 11.8 0.3 0.22 10.9 0.2 1.5 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain Zeta_toxin PF06414.7 gi|557693828|ref|YP_008796882.1| - 0.14 11.2 0.2 0.26 10.3 0.2 1.4 1 0 0 1 1 1 0 Zeta toxin PilN PF05137.8 gi|557693829|ref|YP_008796883.1| - 0.017 14.9 0.0 0.089 12.6 0.0 2.2 1 1 0 1 1 1 0 Fimbrial assembly protein (PilN) Aminotran_1_2 PF00155.16 gi|557693830|ref|YP_008796884.1| - 4.6e-56 190.3 0.0 6.2e-56 189.9 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class I and II CM_2 PF01817.16 gi|557693830|ref|YP_008796884.1| - 4.4e-10 39.4 2.3 1.3e-09 38.0 1.6 1.9 1 0 0 1 1 1 1 Chorismate mutase type II Cys_Met_Meta_PP PF01053.15 gi|557693830|ref|YP_008796884.1| - 1.3e-09 36.8 0.0 3.8e-09 35.3 0.0 1.8 2 1 0 2 2 2 1 Cys/Met metabolism PLP-dependent enzyme Beta_elim_lyase PF01212.16 gi|557693830|ref|YP_008796884.1| - 3.8e-07 29.5 0.0 8.4e-07 28.4 0.0 1.5 1 0 0 1 1 1 1 Beta-eliminating lyase Aminotran_5 PF00266.14 gi|557693830|ref|YP_008796884.1| - 4.4e-07 28.9 0.0 7.2e-07 28.2 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.12 gi|557693830|ref|YP_008796884.1| - 3.4e-06 26.3 0.0 6.6e-06 25.3 0.0 1.4 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Alliinase_C PF04864.8 gi|557693830|ref|YP_008796884.1| - 0.064 11.8 0.0 0.21 10.1 0.0 1.8 2 0 0 2 2 2 0 Allinase PDH PF02153.12 gi|557693831|ref|YP_008796885.1| - 3.5e-18 65.4 0.1 4.5e-18 65.0 0.0 1.1 1 0 0 1 1 1 1 Prephenate dehydrogenase NAD_binding_2 PF03446.10 gi|557693831|ref|YP_008796885.1| - 3.6e-16 59.4 0.1 6.4e-16 58.6 0.0 1.4 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.12 gi|557693831|ref|YP_008796885.1| - 8.9e-10 38.8 0.2 2.6e-09 37.3 0.1 1.8 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent DAO PF01266.19 gi|557693831|ref|YP_008796885.1| - 8.6e-07 28.1 0.0 4.6e-06 25.7 0.0 1.9 1 1 1 2 2 2 1 FAD dependent oxidoreductase HI0933_like PF03486.9 gi|557693831|ref|YP_008796885.1| - 1.5e-06 26.9 0.8 2.3e-06 26.3 0.1 1.7 2 0 0 2 2 2 1 HI0933-like protein 3HCDH_N PF02737.13 gi|557693831|ref|YP_008796885.1| - 5.7e-06 26.1 0.2 1.6e-05 24.6 0.1 1.9 1 1 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_7 PF13241.1 gi|557693831|ref|YP_008796885.1| - 7e-06 26.2 0.0 2.6e-05 24.3 0.0 2.2 1 1 0 1 1 1 1 Putative NAD(P)-binding NAD_binding_8 PF13450.1 gi|557693831|ref|YP_008796885.1| - 7e-06 25.9 0.1 1.9e-05 24.5 0.0 1.8 2 0 0 2 2 1 1 NAD(P)-binding Rossmann-like domain 2-Hacid_dh_C PF02826.14 gi|557693831|ref|YP_008796885.1| - 2.2e-05 23.6 0.0 5.9e-05 22.2 0.0 1.7 1 1 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain UDPG_MGDP_dh_C PF03720.10 gi|557693831|ref|YP_008796885.1| - 3.2e-05 24.0 0.0 9.2e-05 22.5 0.0 1.7 2 0 0 2 2 1 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain TrkA_N PF02254.13 gi|557693831|ref|YP_008796885.1| - 4.3e-05 23.4 0.0 0.00012 22.1 0.0 1.8 1 1 0 1 1 1 1 TrkA-N domain Shikimate_DH PF01488.15 gi|557693831|ref|YP_008796885.1| - 7.4e-05 22.8 0.1 0.00019 21.5 0.1 1.7 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase Pyr_redox_2 PF07992.9 gi|557693831|ref|YP_008796885.1| - 7.5e-05 22.6 0.1 0.00021 21.2 0.1 1.8 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.14 gi|557693831|ref|YP_008796885.1| - 0.00015 20.9 1.3 0.0002 20.5 0.0 1.7 2 0 0 2 2 2 1 FAD binding domain Pyr_redox_3 PF13738.1 gi|557693831|ref|YP_008796885.1| - 0.0004 20.5 0.0 0.00082 19.4 0.0 1.6 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_10 PF13460.1 gi|557693831|ref|YP_008796885.1| - 0.001 19.1 0.2 0.0019 18.2 0.1 1.4 1 0 0 1 1 1 1 NADH(P)-binding Pyr_redox PF00070.22 gi|557693831|ref|YP_008796885.1| - 0.0021 18.4 0.0 0.006 16.9 0.0 1.8 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_Gly3P_dh_N PF01210.18 gi|557693831|ref|YP_008796885.1| - 0.0024 17.5 0.5 0.11 12.1 0.1 2.7 2 1 0 2 2 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus UDPG_MGDP_dh_N PF03721.9 gi|557693831|ref|YP_008796885.1| - 0.0029 17.0 0.1 0.0092 15.3 0.1 1.9 1 1 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain ApbA PF02558.11 gi|557693831|ref|YP_008796885.1| - 0.0064 15.9 0.1 0.012 15.1 0.1 1.5 1 1 0 1 1 1 1 Ketopantoate reductase PanE/ApbA NAD_binding_9 PF13454.1 gi|557693831|ref|YP_008796885.1| - 0.0068 16.1 0.0 0.015 15.1 0.0 1.5 1 1 0 1 1 1 1 FAD-NAD(P)-binding Saccharop_dh PF03435.13 gi|557693831|ref|YP_008796885.1| - 0.022 13.7 0.1 0.03 13.2 0.1 1.3 1 0 0 1 1 1 0 Saccharopine dehydrogenase XdhC_C PF13478.1 gi|557693831|ref|YP_008796885.1| - 0.059 13.6 0.0 0.1 12.9 0.0 1.5 1 0 0 1 1 1 0 XdhC Rossmann domain Thi4 PF01946.12 gi|557693831|ref|YP_008796885.1| - 0.071 12.2 0.1 0.15 11.1 0.0 1.5 1 1 0 1 1 1 0 Thi4 family DUF364 PF04016.7 gi|557693831|ref|YP_008796885.1| - 0.075 12.3 0.0 0.14 11.4 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF364) ThiF PF00899.16 gi|557693831|ref|YP_008796885.1| - 0.1 12.4 0.0 0.39 10.5 0.0 1.9 1 1 1 2 2 2 0 ThiF family IlvN PF07991.7 gi|557693831|ref|YP_008796885.1| - 0.11 11.8 0.0 0.15 11.3 0.0 1.3 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, catalytic domain CoA_binding_2 PF13380.1 gi|557693831|ref|YP_008796885.1| - 0.12 12.5 0.0 0.23 11.6 0.0 1.5 1 0 0 1 1 1 0 CoA binding domain Abhydrolase_5 PF12695.2 gi|557693831|ref|YP_008796885.1| - 0.16 11.7 0.1 0.23 11.2 0.1 1.4 1 1 0 1 1 1 0 Alpha/beta hydrolase family FAD_binding_2 PF00890.19 gi|557693831|ref|YP_008796885.1| - 0.17 10.6 0.1 0.23 10.2 0.0 1.2 1 0 0 1 1 1 0 FAD binding domain DUF1098 PF06497.6 gi|557693831|ref|YP_008796885.1| - 0.45 10.6 2.6 0.54 10.3 0.1 2.2 2 1 0 2 2 2 0 Protein of unknown function (DUF1098) Nitroreductase PF00881.19 gi|557693832|ref|YP_008796886.1| - 5e-31 107.7 0.0 7.3e-31 107.2 0.0 1.2 1 0 0 1 1 1 1 Nitroreductase family TM1586_NiRdase PF14512.1 gi|557693832|ref|YP_008796886.1| - 0.057 12.5 0.0 1.3 8.1 0.0 2.1 1 1 1 2 2 2 0 Putative TM nitroreductase MarR_2 PF12802.2 gi|557693833|ref|YP_008796887.1| - 2.8e-05 23.6 0.0 6.6e-05 22.4 0.0 1.6 1 0 0 1 1 1 1 MarR family TrmB PF01978.14 gi|557693833|ref|YP_008796887.1| - 3.4e-05 23.4 0.0 0.00011 21.8 0.0 1.9 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_45 PF14947.1 gi|557693833|ref|YP_008796887.1| - 5.5e-05 22.9 0.1 0.00022 20.9 0.0 2.0 2 0 0 2 2 2 1 Winged helix-turn-helix HTH_20 PF12840.2 gi|557693833|ref|YP_008796887.1| - 0.00018 21.2 0.0 0.00051 19.7 0.0 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|557693833|ref|YP_008796887.1| - 0.00019 21.0 0.0 0.00047 19.7 0.0 1.7 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family Rrf2 PF02082.15 gi|557693833|ref|YP_008796887.1| - 0.00074 19.5 0.1 0.0031 17.6 0.0 2.0 2 0 0 2 2 2 1 Transcriptional regulator TBPIP PF07106.8 gi|557693833|ref|YP_008796887.1| - 0.0016 17.9 0.1 1.8 8.0 0.0 2.5 2 1 0 2 2 2 2 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) HTH_27 PF13463.1 gi|557693833|ref|YP_008796887.1| - 0.0025 18.0 0.0 0.0097 16.2 0.0 2.0 2 0 0 2 2 2 1 Winged helix DNA-binding domain GntR PF00392.16 gi|557693833|ref|YP_008796887.1| - 0.0034 16.7 1.8 0.066 12.6 0.1 3.0 3 0 0 3 3 3 1 Bacterial regulatory proteins, gntR family MarR PF01047.17 gi|557693833|ref|YP_008796887.1| - 0.005 16.5 0.0 0.046 13.4 0.0 2.4 2 0 0 2 2 2 1 MarR family HrcA_DNA-bdg PF03444.10 gi|557693833|ref|YP_008796887.1| - 0.029 13.8 0.0 0.073 12.5 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding HxlR PF01638.12 gi|557693833|ref|YP_008796887.1| - 0.03 13.9 0.3 0.095 12.3 0.0 2.0 2 0 0 2 2 2 0 HxlR-like helix-turn-helix DUF3085 PF11284.3 gi|557693833|ref|YP_008796887.1| - 0.037 14.2 0.0 0.084 13.0 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3085) PadR PF03551.9 gi|557693833|ref|YP_008796887.1| - 0.073 12.8 0.0 0.66 9.7 0.0 2.5 2 0 0 2 2 2 0 Transcriptional regulator PadR-like family Mrr_N PF14338.1 gi|557693833|ref|YP_008796887.1| - 0.086 12.9 0.1 2.9 8.0 0.0 3.1 3 0 0 3 3 3 0 Mrr N-terminal domain Prim-Pol PF09250.6 gi|557693834|ref|YP_008796888.1| - 9.8e-19 67.9 0.0 1.2e-18 67.6 0.0 1.1 1 0 0 1 1 1 1 Bifunctional DNA primase/polymerase, N-terminal HHH_5 PF14520.1 gi|557693835|ref|YP_008796889.1| - 0.024 14.7 0.5 0.077 13.1 0.3 2.1 1 1 0 1 1 1 0 Helix-hairpin-helix domain RolB_RolC PF02027.12 gi|557693835|ref|YP_008796889.1| - 0.028 13.5 0.0 0.034 13.2 0.0 1.2 1 0 0 1 1 1 0 RolB/RolC glucosidase family Sigma70_ner PF04546.8 gi|557693835|ref|YP_008796889.1| - 0.062 12.8 0.1 0.14 11.7 0.0 1.6 2 0 0 2 2 2 0 Sigma-70, non-essential region HisKA_3 PF07730.8 gi|557693835|ref|YP_008796889.1| - 0.083 13.2 0.3 3 8.2 0.0 2.4 2 0 0 2 2 2 0 Histidine kinase DUF3631 PF12307.3 gi|557693836|ref|YP_008796890.1| - 0.00015 21.7 0.0 0.00023 21.1 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF3631) AAA_23 PF13476.1 gi|557693836|ref|YP_008796890.1| - 0.0028 18.0 0.0 0.0051 17.1 0.0 1.4 1 1 0 1 1 1 1 AAA domain ABC_tran PF00005.22 gi|557693837|ref|YP_008796891.1| - 2.2e-08 34.4 0.0 0.0011 19.2 0.0 2.4 2 0 0 2 2 2 2 ABC transporter AAA_22 PF13401.1 gi|557693837|ref|YP_008796891.1| - 3e-08 33.8 0.0 8.9e-06 25.8 0.0 2.4 2 0 0 2 2 2 1 AAA domain Acetyltransf_1 PF00583.19 gi|557693837|ref|YP_008796891.1| - 3.4e-05 23.7 0.1 0.00015 21.6 0.0 2.2 2 0 0 2 2 2 1 Acetyltransferase (GNAT) family AAA_16 PF13191.1 gi|557693837|ref|YP_008796891.1| - 0.00016 21.7 0.1 0.0011 19.0 0.0 2.3 2 1 0 2 2 2 1 AAA ATPase domain Acetyltransf_7 PF13508.1 gi|557693837|ref|YP_008796891.1| - 0.00036 20.6 0.0 0.0012 18.9 0.0 2.0 2 0 0 2 2 1 1 Acetyltransferase (GNAT) domain AAA_10 PF12846.2 gi|557693837|ref|YP_008796891.1| - 0.00099 18.6 0.3 0.85 8.9 0.1 2.3 2 0 0 2 2 2 2 AAA-like domain NACHT PF05729.7 gi|557693837|ref|YP_008796891.1| - 0.0012 18.5 0.0 0.018 14.7 0.0 2.5 3 0 0 3 3 3 1 NACHT domain AAA_18 PF13238.1 gi|557693837|ref|YP_008796891.1| - 0.0019 18.4 0.0 0.0046 17.2 0.0 1.8 1 0 0 1 1 1 1 AAA domain Acetyltransf_9 PF13527.1 gi|557693837|ref|YP_008796891.1| - 0.011 15.5 0.0 0.027 14.3 0.0 1.7 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain PIF1 PF05970.9 gi|557693837|ref|YP_008796891.1| - 0.02 13.8 0.0 0.035 13.0 0.0 1.3 1 0 0 1 1 1 0 PIF1-like helicase AAA PF00004.24 gi|557693837|ref|YP_008796891.1| - 0.024 14.8 0.1 0.13 12.5 0.0 2.2 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) Acetyltransf_CG PF14542.1 gi|557693837|ref|YP_008796891.1| - 0.024 14.5 0.0 0.062 13.1 0.0 1.7 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase UPF0079 PF02367.12 gi|557693837|ref|YP_008796891.1| - 0.026 14.1 0.0 0.049 13.2 0.0 1.4 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 RNA_helicase PF00910.17 gi|557693837|ref|YP_008796891.1| - 0.026 14.6 0.0 0.13 12.4 0.0 2.0 2 0 0 2 2 2 0 RNA helicase DUF2122 PF09895.4 gi|557693837|ref|YP_008796891.1| - 0.048 13.8 0.1 0.8 9.9 0.0 2.4 2 0 0 2 2 2 0 RecB-family nuclease (DUF2122) SH3_2 PF07653.12 gi|557693837|ref|YP_008796891.1| - 0.057 12.9 0.0 0.15 11.6 0.0 1.6 1 0 0 1 1 1 0 Variant SH3 domain AAA_29 PF13555.1 gi|557693837|ref|YP_008796891.1| - 0.079 12.5 0.0 0.16 11.5 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_25 PF13481.1 gi|557693837|ref|YP_008796891.1| - 0.096 12.0 0.1 1.9 7.8 0.0 2.7 3 0 0 3 3 3 0 AAA domain DUF2075 PF09848.4 gi|557693837|ref|YP_008796891.1| - 0.12 11.3 0.0 0.22 10.4 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) ACR_tran PF00873.14 gi|557693838|ref|YP_008796892.1| - 0.015 12.7 2.8 0.014 12.8 1.9 1.1 1 0 0 1 1 1 0 AcrB/AcrD/AcrF family DUF2663 PF10864.3 gi|557693838|ref|YP_008796892.1| - 0.12 12.6 1.7 0.11 12.7 0.4 1.5 1 1 1 2 2 2 0 Protein of unknown function (DUF2663) ABC2_membrane_5 PF13346.1 gi|557693838|ref|YP_008796892.1| - 1.1 8.5 13.3 1.6 8.0 9.2 1.2 1 0 0 1 1 1 0 ABC-2 family transporter protein DUF2721 PF11026.3 gi|557693838|ref|YP_008796892.1| - 2 8.0 13.0 0.11 12.1 1.3 2.5 2 1 0 2 2 2 0 Protein of unknown function (DUF2721) DUF4231 PF14015.1 gi|557693838|ref|YP_008796892.1| - 3.2 7.7 9.1 3.6 7.6 4.6 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF4231) DUF485 PF04341.7 gi|557693838|ref|YP_008796892.1| - 4.7 6.9 10.8 5.7 6.7 5.3 2.5 1 1 1 2 2 2 0 Protein of unknown function, DUF485 O-antigen_lig PF13425.1 gi|557693838|ref|YP_008796892.1| - 4.9 7.1 15.6 0.2 11.6 1.8 2.7 1 1 2 3 3 3 0 O-antigen ligase like membrane protein Abi PF02517.11 gi|557693838|ref|YP_008796892.1| - 6.7 6.9 13.0 1.4e+02 2.7 7.9 2.4 1 1 1 2 2 2 0 CAAX protease self-immunity Phage_integrase PF00589.17 gi|557693839|ref|YP_008796893.1| - 4.5e-26 91.5 0.0 7.9e-26 90.7 0.0 1.4 1 0 0 1 1 1 1 Phage integrase family Phage_int_SAM_1 PF02899.12 gi|557693839|ref|YP_008796893.1| - 1.2e-05 25.3 0.1 3e-05 24.0 0.1 1.7 1 0 0 1 1 1 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_4 PF13495.1 gi|557693839|ref|YP_008796893.1| - 0.00073 19.8 0.0 0.0016 18.7 0.0 1.5 1 0 0 1 1 1 1 Phage integrase, N-terminal SAM-like domain TMEM154 PF15102.1 gi|557693840|ref|YP_008796894.1| - 0.013 15.2 0.7 0.019 14.6 0.2 1.6 2 0 0 2 2 2 0 TMEM154 protein family Glyco_tranf_2_3 PF13641.1 gi|557693841|ref|YP_008796895.1| - 2.2e-17 63.6 0.0 3.5e-17 62.9 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.1 gi|557693841|ref|YP_008796895.1| - 9.7e-15 54.7 0.4 9.7e-15 54.7 0.2 1.9 2 0 0 2 2 2 1 Glycosyl transferase family group 2 Cellulose_synt PF03552.9 gi|557693841|ref|YP_008796895.1| - 0.018 13.3 0.1 0.026 12.8 0.0 1.1 1 0 0 1 1 1 0 Cellulose synthase AP_endonuc_2 PF01261.19 gi|557693842|ref|YP_008796896.1| - 1.1e-33 116.3 0.0 1.8e-33 115.6 0.0 1.3 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel AP_endonuc_2_N PF07582.7 gi|557693842|ref|YP_008796896.1| - 2.5e-13 49.3 0.0 4.6e-13 48.4 0.0 1.5 1 0 0 1 1 1 1 AP endonuclease family 2 C terminus H_PPase PF03030.11 gi|557693843|ref|YP_008796897.1| - 1.9e-223 743.5 37.3 2.2e-223 743.3 25.9 1.0 1 0 0 1 1 1 1 Inorganic H+ pyrophosphatase Sec34 PF04136.10 gi|557693844|ref|YP_008796898.1| - 0.069 12.8 0.3 9.3 5.9 0.0 2.2 2 0 0 2 2 2 0 Sec34-like family DUF2312 PF10073.4 gi|557693844|ref|YP_008796898.1| - 0.12 11.7 1.2 0.52 9.7 0.0 2.6 2 1 1 3 3 3 0 Uncharacterized protein conserved in bacteria (DUF2312) Oxidored_molyb PF00174.14 gi|557693845|ref|YP_008796899.1| - 2.3e-43 147.5 0.1 3e-43 147.1 0.0 1.1 1 0 0 1 1 1 1 Oxidoreductase molybdopterin binding domain Flavin_Reduct PF01613.13 gi|557693846|ref|YP_008796900.1| - 1.4e-17 64.0 0.0 1.5e-17 63.8 0.0 1.0 1 0 0 1 1 1 1 Flavin reductase like domain NT5C PF06941.7 gi|557693847|ref|YP_008796901.1| - 1e-15 57.7 1.2 1.2e-15 57.4 0.8 1.0 1 0 0 1 1 1 1 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C) HAD_2 PF13419.1 gi|557693847|ref|YP_008796901.1| - 0.0045 17.2 0.3 0.0081 16.3 0.2 1.4 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Pro-kuma_activ PF09286.6 gi|557693847|ref|YP_008796901.1| - 0.11 12.4 0.0 0.19 11.7 0.0 1.4 1 0 0 1 1 1 0 Pro-kumamolisin, activation domain DEAD PF00270.24 gi|557693848|ref|YP_008796902.1| - 1e-16 60.8 0.0 2.2e-16 59.8 0.0 1.5 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|557693848|ref|YP_008796902.1| - 4.4e-10 39.2 0.7 1.8e-09 37.3 0.2 2.3 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|557693848|ref|YP_008796902.1| - 0.00041 20.2 0.0 0.00078 19.3 0.0 1.4 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit AIG2 PF06094.7 gi|557693849|ref|YP_008796903.1| - 3.4e-13 49.9 0.2 4.8e-13 49.4 0.1 1.2 1 0 0 1 1 1 1 AIG2-like family AIG2_2 PF13772.1 gi|557693849|ref|YP_008796903.1| - 3.4e-12 46.3 0.1 4.4e-12 45.9 0.1 1.2 1 0 0 1 1 1 1 AIG2-like family ChaC PF04752.7 gi|557693849|ref|YP_008796903.1| - 0.0028 17.6 0.3 0.0091 15.9 0.1 1.8 1 1 1 2 2 2 1 ChaC-like protein DAO PF01266.19 gi|557693850|ref|YP_008796904.1| - 4.5e-49 167.2 0.0 5.6e-49 166.9 0.0 1.0 1 0 0 1 1 1 1 FAD dependent oxidoreductase Thi4 PF01946.12 gi|557693850|ref|YP_008796904.1| - 1.1e-06 27.9 3.3 0.00044 19.4 0.8 2.4 2 1 0 2 2 2 2 Thi4 family NAD_binding_8 PF13450.1 gi|557693850|ref|YP_008796904.1| - 6e-06 26.1 1.5 1.2e-05 25.2 1.0 1.5 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.19 gi|557693850|ref|YP_008796904.1| - 1.3e-05 24.2 1.0 0.0002 20.3 0.6 2.1 2 0 0 2 2 2 1 FAD binding domain Pyr_redox_2 PF07992.9 gi|557693850|ref|YP_008796904.1| - 1.4e-05 25.1 1.7 0.0073 16.2 1.2 2.2 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|557693850|ref|YP_008796904.1| - 0.00065 19.8 0.1 0.016 15.3 0.1 2.1 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.7 gi|557693850|ref|YP_008796904.1| - 0.0008 18.4 0.3 0.017 14.0 0.2 2.1 2 0 0 2 2 2 1 Lycopene cyclase protein Pyr_redox PF00070.22 gi|557693850|ref|YP_008796904.1| - 0.0011 19.3 0.3 0.041 14.2 0.2 2.4 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.17 gi|557693850|ref|YP_008796904.1| - 0.0048 15.8 0.2 1.9 7.2 0.1 2.2 2 0 0 2 2 2 2 Glucose inhibited division protein A HI0933_like PF03486.9 gi|557693850|ref|YP_008796904.1| - 0.0058 15.1 0.4 0.75 8.2 0.2 2.2 2 0 0 2 2 2 2 HI0933-like protein Mqo PF06039.10 gi|557693850|ref|YP_008796904.1| - 0.015 13.5 0.0 0.023 12.9 0.0 1.1 1 0 0 1 1 1 0 Malate:quinone oxidoreductase (Mqo) FAD_oxidored PF12831.2 gi|557693850|ref|YP_008796904.1| - 0.017 14.2 0.1 0.024 13.7 0.1 1.2 1 0 0 1 1 1 0 FAD dependent oxidoreductase Trp_halogenase PF04820.9 gi|557693850|ref|YP_008796904.1| - 0.27 9.8 0.4 0.38 9.3 0.3 1.2 1 0 0 1 1 1 0 Tryptophan halogenase NAD_binding_9 PF13454.1 gi|557693850|ref|YP_008796904.1| - 0.31 10.7 3.1 13 5.5 0.2 2.9 2 1 1 3 3 3 0 FAD-NAD(P)-binding Diphthamide_syn PF01866.12 gi|557693851|ref|YP_008796905.1| - 3.6e-71 239.9 0.0 4.5e-71 239.5 0.0 1.0 1 0 0 1 1 1 1 Putative diphthamide synthesis protein DUF1847 PF08901.6 gi|557693851|ref|YP_008796905.1| - 0.0081 15.6 0.0 0.14 11.6 0.0 2.3 2 0 0 2 2 2 1 Protein of unknown function (DUF1847) ACT_7 PF13840.1 gi|557693851|ref|YP_008796905.1| - 0.018 14.5 0.0 0.044 13.3 0.0 1.6 1 0 0 1 1 1 0 ACT domain Prok-RING_1 PF14446.1 gi|557693852|ref|YP_008796906.1| - 0.0011 18.6 0.4 0.0017 18.0 0.3 1.3 1 0 0 1 1 1 1 Prokaryotic RING finger family 1 ECR1_N PF14382.1 gi|557693852|ref|YP_008796906.1| - 0.0016 17.7 0.0 0.003 16.7 0.0 1.5 1 0 0 1 1 1 1 Exosome complex exonuclease RRP4 N-terminal region OrfB_Zn_ribbon PF07282.6 gi|557693852|ref|YP_008796906.1| - 0.021 14.4 2.0 0.037 13.6 1.4 1.3 1 0 0 1 1 1 0 Putative transposase DNA-binding domain Baculo_ME53 PF06061.6 gi|557693852|ref|YP_008796906.1| - 0.035 13.1 0.2 0.047 12.6 0.1 1.1 1 0 0 1 1 1 0 Baculoviridae ME53 zinc_ribbon_2 PF13240.1 gi|557693852|ref|YP_008796906.1| - 0.048 13.1 0.5 0.1 12.1 0.3 1.6 1 0 0 1 1 1 0 zinc-ribbon domain HypA PF01155.14 gi|557693852|ref|YP_008796906.1| - 0.11 12.1 0.2 0.21 11.2 0.1 1.4 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family PHD PF00628.24 gi|557693852|ref|YP_008796906.1| - 0.22 11.2 2.2 0.33 10.6 1.5 1.2 1 0 0 1 1 1 0 PHD-finger RecR PF02132.10 gi|557693852|ref|YP_008796906.1| - 0.33 10.4 5.2 3.2 7.2 2.8 2.6 2 1 0 2 2 2 0 RecR protein zf-C2HC5 PF06221.8 gi|557693852|ref|YP_008796906.1| - 0.47 10.2 2.8 0.93 9.3 1.9 1.4 1 0 0 1 1 1 0 Putative zinc finger motif, C2HC5-type TF_Zn_Ribbon PF08271.7 gi|557693852|ref|YP_008796906.1| - 0.77 9.1 5.8 0.78 9.1 0.2 2.5 1 1 0 1 1 1 0 TFIIB zinc-binding Auto_anti-p27 PF06677.7 gi|557693852|ref|YP_008796906.1| - 6.4 6.6 5.8 1.4 8.7 1.7 1.7 2 0 0 2 2 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) RNA_pol_L_2 PF13656.1 gi|557693853|ref|YP_008796907.1| - 1.2e-15 56.6 0.1 1.5e-15 56.3 0.1 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain RNA_pol_L PF01193.19 gi|557693853|ref|YP_008796907.1| - 7.2e-05 21.8 0.0 9.6e-05 21.4 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain Topo-VIb_trans PF09239.6 gi|557693853|ref|YP_008796907.1| - 0.076 12.5 0.0 0.1 12.1 0.0 1.2 1 0 0 1 1 1 0 Topoisomerase VI B subunit, transducer tRNA-synt_1_2 PF13603.1 gi|557693853|ref|YP_008796907.1| - 0.096 11.9 0.0 0.1 11.9 0.0 1.1 1 0 0 1 1 1 0 Leucyl-tRNA synthetase, Domain 2 TFIIS_C PF01096.13 gi|557693854|ref|YP_008796908.1| - 1.3e-20 72.7 15.8 2.4e-20 71.8 3.6 3.1 3 0 0 3 3 3 1 Transcription factor S-II (TFIIS) Zn_Tnp_IS1595 PF12760.2 gi|557693854|ref|YP_008796908.1| - 5e-09 35.8 8.1 6.1e-05 22.7 0.6 2.3 2 0 0 2 2 2 2 Transposase zinc-ribbon domain DZR PF12773.2 gi|557693854|ref|YP_008796908.1| - 5.1e-07 29.4 8.0 0.0011 18.7 0.4 3.0 2 1 1 3 3 3 3 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|557693854|ref|YP_008796908.1| - 1.1e-06 27.6 10.9 0.00027 20.0 0.7 3.4 3 1 0 3 3 3 2 zinc-ribbon domain DUF2387 PF09526.5 gi|557693854|ref|YP_008796908.1| - 1.3e-06 28.2 5.7 0.0035 17.2 0.6 2.2 2 0 0 2 2 2 2 Probable metal-binding protein (DUF2387) RNA_POL_M_15KD PF02150.11 gi|557693854|ref|YP_008796908.1| - 7.2e-06 25.5 0.7 7.2e-06 25.5 0.5 3.1 3 1 0 3 3 3 1 RNA polymerases M/15 Kd subunit zinc_ribbon_2 PF13240.1 gi|557693854|ref|YP_008796908.1| - 0.00013 21.3 14.4 0.087 12.3 0.4 4.2 4 0 0 4 4 4 2 zinc-ribbon domain UPF0547 PF10571.4 gi|557693854|ref|YP_008796908.1| - 0.00018 21.1 11.6 0.15 11.7 1.0 3.8 3 1 0 3 3 3 2 Uncharacterised protein family UPF0547 zinc_ribbon_5 PF13719.1 gi|557693854|ref|YP_008796908.1| - 0.00022 20.7 11.3 0.36 10.4 0.5 4.1 4 0 0 4 4 4 1 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|557693854|ref|YP_008796908.1| - 0.00026 20.6 12.0 0.51 10.0 0.7 4.1 4 0 0 4 4 4 1 zinc-ribbon domain zf-TFIIB PF13453.1 gi|557693854|ref|YP_008796908.1| - 0.00044 19.3 0.9 0.00044 19.3 0.6 2.7 2 1 0 2 2 2 1 Transcription factor zinc-finger OrfB_Zn_ribbon PF07282.6 gi|557693854|ref|YP_008796908.1| - 0.00074 19.1 9.5 0.093 12.4 0.9 2.6 2 1 0 2 2 2 2 Putative transposase DNA-binding domain TF_Zn_Ribbon PF08271.7 gi|557693854|ref|YP_008796908.1| - 0.0008 18.6 12.4 0.067 12.5 1.1 3.7 2 2 1 3 3 3 2 TFIIB zinc-binding PhnA_Zn_Ribbon PF08274.7 gi|557693854|ref|YP_008796908.1| - 0.0017 18.1 7.3 0.52 10.1 0.6 3.8 3 1 0 3 3 3 1 PhnA Zinc-Ribbon DUF2082 PF09855.4 gi|557693854|ref|YP_008796908.1| - 0.0048 16.7 7.1 20 5.1 0.0 4.1 4 0 0 4 4 4 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) Elf1 PF05129.8 gi|557693854|ref|YP_008796908.1| - 0.0052 16.4 6.3 0.43 10.2 0.7 2.9 1 1 1 2 2 2 1 Transcription elongation factor Elf1 like DNA_RNApol_7kD PF03604.8 gi|557693854|ref|YP_008796908.1| - 0.0073 15.7 8.7 4.1 6.9 1.2 3.6 3 1 0 3 3 3 0 DNA directed RNA polymerase, 7 kDa subunit Nudix_N_2 PF14803.1 gi|557693854|ref|YP_008796908.1| - 0.012 15.2 13.7 0.65 9.7 3.3 3.8 3 1 0 3 3 3 0 Nudix N-terminal Prok-RING_1 PF14446.1 gi|557693854|ref|YP_008796908.1| - 0.012 15.3 7.2 0.2 11.4 0.4 3.2 3 0 0 3 3 3 0 Prokaryotic RING finger family 1 Sgf11 PF08209.6 gi|557693854|ref|YP_008796908.1| - 0.013 14.7 8.8 1.5 8.2 0.0 3.9 4 0 0 4 4 4 0 Sgf11 (transcriptional regulation protein) Zn-ribbon_8 PF09723.5 gi|557693854|ref|YP_008796908.1| - 0.019 14.9 15.1 1.8 8.5 0.1 4.0 3 1 0 3 3 3 0 Zinc ribbon domain A2L_zn_ribbon PF08792.5 gi|557693854|ref|YP_008796908.1| - 0.026 13.9 11.4 2.3 7.7 0.1 4.1 4 0 0 4 4 4 0 A2L zinc ribbon domain zf-C4pol PF14260.1 gi|557693854|ref|YP_008796908.1| - 0.043 13.8 1.8 0.97 9.4 0.1 2.4 1 1 1 2 2 2 0 C4-type zinc-finger of DNA polymerase delta zf-RING_3 PF14369.1 gi|557693854|ref|YP_008796908.1| - 0.05 13.6 6.4 0.74 9.8 0.2 3.2 3 1 0 3 3 3 0 zinc-finger IBR PF01485.16 gi|557693854|ref|YP_008796908.1| - 0.054 13.3 7.2 2.4 8.0 0.7 3.2 3 0 0 3 3 3 0 IBR domain zinc-ribbons_6 PF07191.7 gi|557693854|ref|YP_008796908.1| - 0.057 13.2 4.5 1.1 9.1 0.2 2.3 2 0 0 2 2 2 0 zinc-ribbons HypA PF01155.14 gi|557693854|ref|YP_008796908.1| - 0.07 12.8 8.3 0.12 12.0 0.6 3.0 1 1 2 3 3 3 0 Hydrogenase expression/synthesis hypA family zf-IS66 PF13005.2 gi|557693854|ref|YP_008796908.1| - 0.083 12.8 7.0 4.3 7.3 0.1 3.9 4 0 0 4 4 4 0 zinc-finger binding domain of transposase IS66 C1_1 PF00130.17 gi|557693854|ref|YP_008796908.1| - 0.086 12.5 1.1 0.086 12.5 0.8 2.5 2 1 0 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) zf-Mss51 PF13824.1 gi|557693854|ref|YP_008796908.1| - 0.13 12.1 10.1 2.8 7.8 1.7 2.9 2 1 0 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 Cys_rich_CPCC PF14206.1 gi|557693854|ref|YP_008796908.1| - 0.16 11.5 1.9 1.1 8.8 0.0 2.6 3 0 0 3 3 3 0 Cysteine-rich CPCC Lar_restr_allev PF14354.1 gi|557693854|ref|YP_008796908.1| - 0.25 11.6 9.6 2.3 8.5 0.7 2.7 1 1 0 2 2 2 0 Restriction alleviation protein Lar LIM PF00412.17 gi|557693854|ref|YP_008796908.1| - 0.26 11.3 4.9 0.91 9.6 0.2 2.8 3 0 0 3 3 3 0 LIM domain zf-RING_5 PF14634.1 gi|557693854|ref|YP_008796908.1| - 0.39 10.4 10.0 51 3.7 0.1 3.3 2 1 0 2 2 2 0 zinc-RING finger domain FYDLN_acid PF09538.5 gi|557693854|ref|YP_008796908.1| - 0.41 11.2 7.2 6 7.4 0.6 3.6 1 1 2 3 3 3 0 Protein of unknown function (FYDLN_acid) NOB1_Zn_bind PF08772.6 gi|557693854|ref|YP_008796908.1| - 0.47 10.3 15.3 0.83 9.5 0.5 3.8 1 1 3 4 4 4 0 Nin one binding (NOB1) Zn-ribbon like DUF2296 PF10058.4 gi|557693854|ref|YP_008796908.1| - 0.52 10.0 9.7 1.6 8.5 1.5 3.8 3 1 0 3 3 3 0 Predicted integral membrane metal-binding protein (DUF2296) zf-GRF PF06839.7 gi|557693854|ref|YP_008796908.1| - 0.61 10.0 6.4 0.21 11.5 0.4 2.7 3 0 0 3 3 3 0 GRF zinc finger FdhE PF04216.7 gi|557693854|ref|YP_008796908.1| - 0.63 9.6 9.7 0.83 9.3 1.2 2.0 1 1 1 2 2 2 0 Protein involved in formate dehydrogenase formation PolC_DP2 PF03833.8 gi|557693854|ref|YP_008796908.1| - 0.88 7.1 4.5 0.45 8.1 0.5 1.8 1 1 1 2 2 2 0 DNA polymerase II large subunit DP2 Rubredoxin PF00301.15 gi|557693854|ref|YP_008796908.1| - 0.95 9.3 12.3 7.4 6.5 0.2 4.1 4 0 0 4 4 4 0 Rubredoxin Terminase_GpA PF05876.7 gi|557693854|ref|YP_008796908.1| - 0.97 7.7 7.5 0.29 9.4 2.9 1.7 1 1 0 2 2 2 0 Phage terminase large subunit (GpA) zf-C3HC4_2 PF13923.1 gi|557693854|ref|YP_008796908.1| - 1.2 9.2 7.1 20 5.3 0.1 3.5 3 1 0 3 3 3 0 Zinc finger, C3HC4 type (RING finger) DUF3797 PF12677.2 gi|557693854|ref|YP_008796908.1| - 1.9 8.1 9.3 13 5.5 0.1 3.9 4 0 0 4 4 4 0 Domain of unknown function (DUF3797) Zn_ribbon_recom PF13408.1 gi|557693854|ref|YP_008796908.1| - 1.9 8.7 16.0 5 7.4 3.6 3.7 2 2 1 3 3 3 0 Recombinase zinc beta ribbon domain zf-FPG_IleRS PF06827.9 gi|557693854|ref|YP_008796908.1| - 1.9 8.1 15.7 0.56 9.8 2.6 3.7 3 1 0 3 3 3 0 Zinc finger found in FPG and IleRS zf-ISL3 PF14690.1 gi|557693854|ref|YP_008796908.1| - 2.4 8.2 13.1 8.3 6.5 0.0 4.2 4 1 0 4 4 4 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Baculo_LEF5_C PF11792.3 gi|557693854|ref|YP_008796908.1| - 2.4 7.5 11.6 0.063 12.6 0.8 3.1 3 1 0 3 3 3 0 Baculoviridae late expression factor 5 C-terminal domain zf-NADH-PPase PF09297.6 gi|557693854|ref|YP_008796908.1| - 2.5 7.7 17.3 2.1 7.8 0.1 3.6 3 1 0 3 3 3 0 NADH pyrophosphatase zinc ribbon domain RRN7 PF11781.3 gi|557693854|ref|YP_008796908.1| - 2.7 7.5 14.9 6.5 6.3 1.6 3.8 3 1 0 3 3 3 0 RNA polymerase I-specific transcription initiation factor Rrn7 zf-CHY PF05495.7 gi|557693854|ref|YP_008796908.1| - 2.8 8.1 7.0 5.1e+02 0.9 4.8 2.7 1 1 0 1 1 1 0 CHY zinc finger zf-C2H2_4 PF13894.1 gi|557693854|ref|YP_008796908.1| - 3.1 8.3 10.3 20 5.8 0.3 3.9 4 0 0 4 4 4 0 C2H2-type zinc finger ADK_lid PF05191.9 gi|557693854|ref|YP_008796908.1| - 3.8 7.2 10.1 31 4.3 0.1 3.9 4 0 0 4 4 4 0 Adenylate kinase, active site lid zf-AN1 PF01428.11 gi|557693854|ref|YP_008796908.1| - 4 7.4 6.9 32 4.4 0.6 3.3 3 1 0 3 3 3 0 AN1-like Zinc finger zf-RING_4 PF14570.1 gi|557693854|ref|YP_008796908.1| - 4.2 7.0 7.6 27 4.4 0.7 3.4 3 1 0 3 3 3 0 RING/Ubox like zinc-binding domain Ribosomal_L32p PF01783.18 gi|557693854|ref|YP_008796908.1| - 5.6 7.2 7.2 23 5.2 0.0 3.5 2 1 1 3 3 3 0 Ribosomal L32p protein family GFA PF04828.9 gi|557693854|ref|YP_008796908.1| - 5.6 6.9 11.2 9.3 6.2 0.5 3.5 1 1 2 3 3 3 0 Glutathione-dependent formaldehyde-activating enzyme zf-LITAF-like PF10601.4 gi|557693854|ref|YP_008796908.1| - 6.2 6.7 6.9 26 4.7 0.1 3.4 4 0 0 4 4 4 0 LITAF-like zinc ribbon domain RNHCP PF12647.2 gi|557693854|ref|YP_008796908.1| - 7.3 6.5 8.6 41 4.0 2.4 2.9 1 1 1 2 2 2 0 RNHCP domain zf-H2C2_2 PF13465.1 gi|557693854|ref|YP_008796908.1| - 9.5 6.7 10.7 26 5.3 0.5 3.9 4 0 0 4 4 4 0 Zinc-finger double domain HTH_3 PF01381.17 gi|557693855|ref|YP_008796909.1| - 0.0049 16.6 0.0 0.01 15.6 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix HTH_26 PF13443.1 gi|557693855|ref|YP_008796909.1| - 0.016 15.4 0.1 0.035 14.2 0.0 1.5 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain Pribosyltran PF00156.22 gi|557693855|ref|YP_008796909.1| - 0.054 13.2 0.1 0.16 11.7 0.0 1.8 2 0 0 2 2 2 0 Phosphoribosyl transferase domain RHH_3 PF12651.2 gi|557693855|ref|YP_008796909.1| - 0.093 12.4 0.1 0.22 11.3 0.1 1.7 1 1 0 1 1 1 0 Ribbon-helix-helix domain Ald_Xan_dh_C2 PF02738.13 gi|557693856|ref|YP_008796910.1| - 3.7e-133 444.7 0.0 5.1e-133 444.2 0.0 1.1 1 0 0 1 1 1 1 Molybdopterin-binding domain of aldehyde dehydrogenase Ald_Xan_dh_C PF01315.17 gi|557693856|ref|YP_008796910.1| - 6.4e-28 97.0 0.4 1.3e-27 96.0 0.3 1.5 1 0 0 1 1 1 1 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain Fer2_2 PF01799.15 gi|557693857|ref|YP_008796911.1| - 2.1e-27 94.7 0.1 3.8e-27 93.9 0.1 1.4 1 0 0 1 1 1 1 [2Fe-2S] binding domain Fer2 PF00111.22 gi|557693857|ref|YP_008796911.1| - 9.9e-07 28.4 2.4 1.1e-06 28.3 0.3 2.0 2 0 0 2 2 2 1 2Fe-2S iron-sulfur cluster binding domain Fer2_3 PF13085.1 gi|557693857|ref|YP_008796911.1| - 0.0019 17.9 0.5 0.0026 17.5 0.4 1.4 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain SUI1 PF01253.17 gi|557693857|ref|YP_008796911.1| - 0.11 12.3 0.5 0.35 10.7 0.0 2.0 1 1 1 2 2 2 0 Translation initiation factor SUI1 DHODB_Fe-S_bind PF10418.4 gi|557693857|ref|YP_008796911.1| - 7.2 6.1 11.1 0.2 11.1 3.1 1.8 2 0 0 2 2 2 0 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B FAD_binding_5 PF00941.16 gi|557693858|ref|YP_008796912.1| - 7.2e-27 93.9 0.0 1.1e-26 93.3 0.0 1.3 1 0 0 1 1 1 1 FAD binding domain in molybdopterin dehydrogenase CO_deh_flav_C PF03450.12 gi|557693858|ref|YP_008796912.1| - 8.3e-16 57.8 0.1 1.3e-15 57.1 0.0 1.2 1 0 0 1 1 1 1 CO dehydrogenase flavoprotein C-terminal domain DUF554 PF04474.7 gi|557693858|ref|YP_008796912.1| - 0.068 12.3 0.0 0.11 11.6 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF554) Amidohydro_4 PF13147.1 gi|557693859|ref|YP_008796913.1| - 8.2e-29 101.4 0.0 1e-28 101.1 0.0 1.1 1 0 0 1 1 1 1 Amidohydrolase Amidohydro_5 PF13594.1 gi|557693859|ref|YP_008796913.1| - 1.4e-14 53.6 0.8 4.2e-14 52.1 0.3 2.1 2 0 0 2 2 2 1 Amidohydrolase Amidohydro_1 PF01979.15 gi|557693859|ref|YP_008796913.1| - 1.7e-14 54.2 0.0 4.3e-13 49.6 0.0 2.2 1 1 0 1 1 1 1 Amidohydrolase family Urease_alpha PF00449.15 gi|557693859|ref|YP_008796913.1| - 4e-06 26.9 0.2 8.3e-06 25.9 0.1 1.5 1 0 0 1 1 1 1 Urease alpha-subunit, N-terminal domain Amidohydro_3 PF07969.6 gi|557693859|ref|YP_008796913.1| - 9.9e-06 25.0 0.3 0.0015 17.7 0.0 2.6 2 1 1 3 3 3 2 Amidohydrolase family Memo PF01875.12 gi|557693860|ref|YP_008796914.1| - 2.9e-77 259.2 0.0 3.3e-77 259.0 0.0 1.0 1 0 0 1 1 1 1 Memo-like protein LigB PF02900.13 gi|557693860|ref|YP_008796914.1| - 1.8e-05 23.8 0.0 7.9e-05 21.7 0.0 1.9 1 1 0 1 1 1 1 Catalytic LigB subunit of aromatic ring-opening dioxygenase GHMP_kinases_N PF00288.21 gi|557693861|ref|YP_008796915.1| - 6.4e-17 61.3 0.2 1.3e-16 60.3 0.2 1.6 1 0 0 1 1 1 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.8 gi|557693861|ref|YP_008796915.1| - 7e-17 61.4 1.5 1.6e-16 60.2 0.1 2.1 2 0 0 2 2 2 1 GHMP kinases C terminal GalKase_gal_bdg PF10509.4 gi|557693861|ref|YP_008796915.1| - 0.00047 19.3 0.0 0.001 18.2 0.0 1.6 1 0 0 1 1 1 1 Galactokinase galactose-binding signature AA_kinase PF00696.23 gi|557693862|ref|YP_008796916.1| - 1.8e-42 145.5 0.4 2e-42 145.3 0.3 1.0 1 0 0 1 1 1 1 Amino acid kinase family FMN_dh PF01070.13 gi|557693863|ref|YP_008796917.1| - 8.1e-36 123.5 0.0 9.8e-27 93.7 0.0 2.0 1 1 1 2 2 2 2 FMN-dependent dehydrogenase IMPDH PF00478.20 gi|557693863|ref|YP_008796917.1| - 4.2e-07 29.1 6.3 7.4e-06 25.0 1.6 3.0 3 1 1 4 4 4 2 IMP dehydrogenase / GMP reductase domain Glu_synthase PF01645.12 gi|557693863|ref|YP_008796917.1| - 0.00021 20.3 2.3 0.00061 18.8 1.6 1.7 1 1 0 1 1 1 1 Conserved region in glutamate synthase DHO_dh PF01180.16 gi|557693863|ref|YP_008796917.1| - 0.00033 19.7 0.1 0.00067 18.6 0.0 1.6 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase DUF561 PF04481.7 gi|557693863|ref|YP_008796917.1| - 0.0015 17.5 0.0 0.0053 15.7 0.0 1.8 2 0 0 2 2 2 1 Protein of unknown function (DUF561) NMO PF03060.10 gi|557693863|ref|YP_008796917.1| - 0.0028 16.8 1.3 0.0068 15.5 0.3 2.0 2 0 0 2 2 2 1 Nitronate monooxygenase His_biosynth PF00977.16 gi|557693863|ref|YP_008796917.1| - 0.077 12.2 0.4 0.74 9.0 0.1 2.3 1 1 2 3 3 3 0 Histidine biosynthesis protein ThiG PF05690.9 gi|557693863|ref|YP_008796917.1| - 0.45 9.5 5.0 5.3 6.0 0.1 2.8 1 1 2 3 3 3 0 Thiazole biosynthesis protein ThiG tRNA-synt_1c PF00749.16 gi|557693864|ref|YP_008796918.1| - 1.3e-70 237.5 0.0 1.7e-70 237.2 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (E and Q), catalytic domain tRNA-synt_1c_C PF03950.13 gi|557693864|ref|YP_008796918.1| - 6.8e-28 97.4 0.0 1.2e-27 96.7 0.0 1.4 1 0 0 1 1 1 1 tRNA synthetases class I (E and Q), anti-codon binding domain Ribosomal_L7Ae PF01248.21 gi|557693865|ref|YP_008796919.1| - 2.2e-30 104.0 0.1 2.6e-30 103.7 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family RNase_P_pop3 PF08228.6 gi|557693865|ref|YP_008796919.1| - 0.011 15.5 0.0 0.013 15.3 0.0 1.1 1 0 0 1 1 1 0 RNase P subunit Pop3 RRF PF01765.14 gi|557693865|ref|YP_008796919.1| - 0.018 14.5 0.1 0.22 10.9 0.0 2.0 1 1 1 2 2 2 0 Ribosome recycling factor Ribosomal_S28e PF01200.13 gi|557693866|ref|YP_008796920.1| - 2.9e-30 103.8 2.9 2.9e-30 103.8 2.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S28e Biotin_lipoyl_2 PF13533.1 gi|557693866|ref|YP_008796920.1| - 0.94 9.1 5.5 2.7 7.7 0.1 3.1 2 2 0 2 2 2 0 Biotin-lipoyl like Ribosomal_L24e PF01246.15 gi|557693867|ref|YP_008796921.1| - 1.4e-16 60.0 1.1 1.6e-16 59.9 0.7 1.0 1 0 0 1 1 1 1 Ribosomal protein L24e zf-FCS PF06467.9 gi|557693867|ref|YP_008796921.1| - 2.8e-05 23.6 2.2 4.5e-05 23.0 1.6 1.3 1 0 0 1 1 1 1 MYM-type Zinc finger with FCS sequence motif zf-C2H2_6 PF13912.1 gi|557693867|ref|YP_008796921.1| - 0.0097 15.7 0.4 0.019 14.8 0.3 1.5 1 0 0 1 1 1 1 C2H2-type zinc finger DUF581 PF04570.9 gi|557693867|ref|YP_008796921.1| - 0.011 15.0 2.5 0.023 13.9 1.7 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF581) zf-C4_ClpX PF06689.8 gi|557693867|ref|YP_008796921.1| - 0.013 14.9 0.1 0.013 14.9 0.0 1.6 2 0 0 2 2 2 0 ClpX C4-type zinc finger CpXC PF14353.1 gi|557693867|ref|YP_008796921.1| - 0.022 14.7 0.1 0.028 14.3 0.0 1.3 1 1 0 1 1 1 0 CpXC protein DUF2175 PF09943.4 gi|557693867|ref|YP_008796921.1| - 0.13 12.2 0.6 0.13 12.3 0.4 1.1 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2175) zf-H2C2_2 PF13465.1 gi|557693867|ref|YP_008796921.1| - 0.35 11.2 0.4 0.35 11.2 0.3 1.9 2 0 0 2 2 2 0 Zinc-finger double domain DUF329 PF03884.9 gi|557693867|ref|YP_008796921.1| - 1 9.0 3.4 6.8 6.3 2.4 2.0 1 1 0 1 1 1 0 Domain of unknown function (DUF329) NDK PF00334.14 gi|557693868|ref|YP_008796922.1| - 4.5e-50 168.9 0.0 5e-50 168.7 0.0 1.0 1 0 0 1 1 1 1 Nucleoside diphosphate kinase DUF2840 PF11000.3 gi|557693868|ref|YP_008796922.1| - 0.13 11.7 0.0 0.19 11.2 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2840) GTP_EFTU PF00009.22 gi|557693869|ref|YP_008796923.1| - 3.5e-37 127.6 0.0 5.5e-37 127.0 0.0 1.3 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain eIF2_C PF09173.6 gi|557693869|ref|YP_008796923.1| - 3.8e-23 81.3 0.3 7.2e-23 80.4 0.2 1.5 1 0 0 1 1 1 1 Initiation factor eIF2 gamma, C terminal GTP_EFTU_D2 PF03144.20 gi|557693869|ref|YP_008796923.1| - 4.7e-07 29.8 2.9 5.9e-07 29.5 0.5 2.3 2 1 1 3 3 3 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.18 gi|557693869|ref|YP_008796923.1| - 0.00039 20.3 0.0 0.00078 19.3 0.0 1.6 1 0 0 1 1 1 1 50S ribosome-binding GTPase ArgK PF03308.11 gi|557693869|ref|YP_008796923.1| - 0.0066 15.2 0.0 0.023 13.4 0.0 1.8 2 0 0 2 2 2 1 ArgK protein DUF1250 PF06855.7 gi|557693869|ref|YP_008796923.1| - 0.03 13.8 0.0 0.07 12.6 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF1250) Fcf1 PF04900.7 gi|557693870|ref|YP_008796924.1| - 0.006 16.6 0.0 0.0078 16.2 0.0 1.1 1 0 0 1 1 1 1 Fcf1 PIN_4 PF13638.1 gi|557693870|ref|YP_008796924.1| - 0.084 12.9 0.0 0.093 12.8 0.0 1.2 1 0 0 1 1 1 0 PIN domain SHS2_Rpb7-N PF03876.12 gi|557693871|ref|YP_008796925.1| - 1.5e-14 53.8 0.0 2.5e-14 53.1 0.0 1.4 1 0 0 1 1 1 1 SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397 S1 PF00575.18 gi|557693871|ref|YP_008796925.1| - 2.7e-14 53.0 0.2 6.8e-14 51.7 0.2 1.6 1 0 0 1 1 1 1 S1 RNA binding domain Spt4 PF06093.8 gi|557693872|ref|YP_008796926.1| - 8.3e-14 51.2 0.3 9.9e-14 50.9 0.2 1.1 1 0 0 1 1 1 1 Spt4/RpoE2 zinc finger Laminin_EGF PF00053.19 gi|557693872|ref|YP_008796926.1| - 0.0084 16.0 0.9 0.011 15.6 0.6 1.2 1 0 0 1 1 1 1 Laminin EGF-like (Domains III and V) DUF359 PF04019.7 gi|557693873|ref|YP_008796927.1| - 8.8e-31 105.8 0.5 1.2e-30 105.3 0.4 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF359) Ribosomal_S27 PF01599.14 gi|557693874|ref|YP_008796928.1| - 3.3e-14 52.4 2.3 3.8e-14 52.2 1.6 1.1 1 0 0 1 1 1 1 Ribosomal protein S27a Zn_Tnp_IS1595 PF12760.2 gi|557693874|ref|YP_008796928.1| - 0.00026 20.7 1.1 0.00036 20.2 0.7 1.4 1 0 0 1 1 1 1 Transposase zinc-ribbon domain IBR PF01485.16 gi|557693874|ref|YP_008796928.1| - 0.0025 17.6 0.1 0.0027 17.5 0.1 1.1 1 0 0 1 1 1 1 IBR domain TF_Zn_Ribbon PF08271.7 gi|557693874|ref|YP_008796928.1| - 0.0026 17.0 3.4 0.0038 16.5 2.3 1.3 1 0 0 1 1 1 1 TFIIB zinc-binding GCC2_GCC3 PF07699.8 gi|557693874|ref|YP_008796928.1| - 0.0026 17.2 0.8 0.0033 16.9 0.6 1.1 1 0 0 1 1 1 1 GCC2 and GCC3 Ribosomal_L37e PF01907.14 gi|557693874|ref|YP_008796928.1| - 0.0051 16.5 3.0 0.007 16.1 2.1 1.2 1 0 0 1 1 1 1 Ribosomal protein L37e OrfB_Zn_ribbon PF07282.6 gi|557693874|ref|YP_008796928.1| - 0.018 14.7 1.8 0.058 13.0 1.2 1.6 1 1 1 2 2 2 0 Putative transposase DNA-binding domain Nudix_N_2 PF14803.1 gi|557693874|ref|YP_008796928.1| - 0.024 14.3 3.0 0.1 12.2 0.1 2.1 2 0 0 2 2 2 0 Nudix N-terminal zf-ribbon_3 PF13248.1 gi|557693874|ref|YP_008796928.1| - 0.032 13.4 2.8 1.3 8.3 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|557693874|ref|YP_008796928.1| - 0.039 13.4 2.3 2.7 7.5 0.0 2.2 2 0 0 2 2 2 0 zinc-ribbon domain DUF1936 PF09151.5 gi|557693874|ref|YP_008796928.1| - 0.048 13.1 2.4 0.29 10.6 0.2 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF1936) Tnp_zf-ribbon_2 PF13842.1 gi|557693874|ref|YP_008796928.1| - 0.05 14.0 0.8 1.6 9.1 0.0 2.1 2 0 0 2 2 2 0 DDE_Tnp_1-like zinc-ribbon DUF1610 PF07754.6 gi|557693874|ref|YP_008796928.1| - 0.067 13.3 6.8 0.16 12.0 0.6 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) A2L_zn_ribbon PF08792.5 gi|557693874|ref|YP_008796928.1| - 0.077 12.4 1.0 0.79 9.2 0.1 2.1 2 0 0 2 2 2 0 A2L zinc ribbon domain zf-HYPF PF07503.7 gi|557693874|ref|YP_008796928.1| - 0.092 12.1 0.8 0.48 9.8 0.0 2.1 2 0 0 2 2 2 0 HypF finger Rubredoxin PF00301.15 gi|557693874|ref|YP_008796928.1| - 0.093 12.6 2.0 5.2 7.0 0.0 2.2 2 0 0 2 2 2 0 Rubredoxin DZR PF12773.2 gi|557693874|ref|YP_008796928.1| - 0.096 12.5 1.6 0.15 11.8 1.1 1.4 1 1 0 1 1 1 0 Double zinc ribbon zinc_ribbon_4 PF13717.1 gi|557693874|ref|YP_008796928.1| - 0.1 12.2 3.6 2.2 8.0 2.3 2.3 1 1 1 2 2 2 0 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|557693874|ref|YP_008796928.1| - 0.11 12.0 3.6 1.9 8.1 2.3 2.3 1 1 1 2 2 2 0 zinc-ribbon domain HypA PF01155.14 gi|557693874|ref|YP_008796928.1| - 0.12 12.0 0.1 0.13 11.9 0.1 1.2 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family zf-DNL PF05180.7 gi|557693874|ref|YP_008796928.1| - 0.13 12.0 1.4 3.5 7.4 0.0 2.1 1 1 1 2 2 2 0 DNL zinc finger zf-CCHC_5 PF14787.1 gi|557693874|ref|YP_008796928.1| - 0.18 11.3 1.1 0.49 9.9 0.0 2.0 2 0 0 2 2 2 0 GAG-polyprotein viral zinc-finger Zn-ribbon_8 PF09723.5 gi|557693874|ref|YP_008796928.1| - 0.19 11.7 3.2 4.6 7.2 0.0 2.1 2 0 0 2 2 2 0 Zinc ribbon domain zf-H2C2_2 PF13465.1 gi|557693874|ref|YP_008796928.1| - 0.19 12.0 1.2 1.9 8.9 0.1 2.2 2 0 0 2 2 2 0 Zinc-finger double domain Lar_restr_allev PF14354.1 gi|557693874|ref|YP_008796928.1| - 0.2 11.9 1.6 0.33 11.2 1.1 1.6 1 1 0 1 1 1 0 Restriction alleviation protein Lar zf-ISL3 PF14690.1 gi|557693874|ref|YP_008796928.1| - 0.25 11.3 5.8 0.42 10.6 0.3 2.2 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-HIT PF04438.11 gi|557693874|ref|YP_008796928.1| - 0.31 10.7 6.4 3.4 7.3 0.1 2.2 2 0 0 2 2 2 0 HIT zinc finger ADK_lid PF05191.9 gi|557693874|ref|YP_008796928.1| - 0.33 10.6 4.6 6.5 6.5 0.2 2.2 2 0 0 2 2 2 0 Adenylate kinase, active site lid DUF2082 PF09855.4 gi|557693874|ref|YP_008796928.1| - 0.35 10.7 3.6 3 7.7 0.5 2.1 1 1 1 2 2 2 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) Auto_anti-p27 PF06677.7 gi|557693874|ref|YP_008796928.1| - 0.37 10.5 3.5 1.4 8.7 2.4 2.0 1 1 1 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) TFIIS_C PF01096.13 gi|557693874|ref|YP_008796928.1| - 0.4 10.3 2.6 9.9 5.8 0.4 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) zf-Mss51 PF13824.1 gi|557693874|ref|YP_008796928.1| - 0.46 10.3 4.2 2.6 7.9 0.2 2.1 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 zf-C2H2_3 PF13878.1 gi|557693874|ref|YP_008796928.1| - 0.65 9.6 4.3 3.5 7.2 0.1 2.1 1 1 1 2 2 2 0 zinc-finger of acetyl-transferase ESCO FeS PF04060.8 gi|557693874|ref|YP_008796928.1| - 0.96 9.0 3.9 0.62 9.6 0.6 1.9 2 0 0 2 2 2 0 Putative Fe-S cluster DNA_RNApol_7kD PF03604.8 gi|557693874|ref|YP_008796928.1| - 1.1 8.8 5.2 9.5 5.7 1.3 2.2 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit zf-C2H2 PF00096.21 gi|557693874|ref|YP_008796928.1| - 2.9 8.3 5.8 6.6 7.2 1.2 2.3 2 0 0 2 2 2 0 Zinc finger, C2H2 type Zn_Tnp_IS1 PF03811.8 gi|557693874|ref|YP_008796928.1| - 5.3 6.6 7.6 1.5e+02 1.9 5.2 2.4 1 1 0 1 1 1 0 InsA N-terminal domain Ribosomal_S24e PF01282.14 gi|557693875|ref|YP_008796929.1| - 6.3e-15 54.7 0.1 1e-14 54.0 0.0 1.4 1 1 0 1 1 1 1 Ribosomal protein S24e SAICAR_synt PF01259.13 gi|557693875|ref|YP_008796929.1| - 0.027 13.5 0.0 0.031 13.3 0.0 1.1 1 0 0 1 1 1 0 SAICAR synthetase Ribosomal_S6e PF01092.14 gi|557693876|ref|YP_008796930.1| - 4.2e-33 113.6 4.8 1.8e-29 101.9 3.4 2.0 1 1 0 1 1 1 1 Ribosomal protein S6e GTP_EFTU PF00009.22 gi|557693877|ref|YP_008796931.1| - 1.3e-29 102.9 0.0 3.6e-26 91.7 0.0 2.4 2 0 0 2 2 2 2 Elongation factor Tu GTP binding domain IF-2 PF11987.3 gi|557693877|ref|YP_008796931.1| - 4.9e-17 61.7 0.5 1.4e-16 60.3 0.3 1.8 1 0 0 1 1 1 1 Translation-initiation factor 2 GTP_EFTU_D4 PF14578.1 gi|557693877|ref|YP_008796931.1| - 2.4e-16 59.1 3.1 2.4e-16 59.1 2.2 2.4 2 0 0 2 2 2 1 Elongation factor Tu domain 4 GTP_EFTU_D2 PF03144.20 gi|557693877|ref|YP_008796931.1| - 3.9e-06 26.8 7.5 0.00019 21.4 0.0 3.5 3 0 0 3 3 3 2 Elongation factor Tu domain 2 PT-HINT PF07591.6 gi|557693877|ref|YP_008796931.1| - 0.00024 20.9 0.0 0.00076 19.3 0.0 1.9 1 0 0 1 1 1 1 Pretoxin HINT domain ATP_bind_1 PF03029.12 gi|557693877|ref|YP_008796931.1| - 0.016 14.7 0.0 0.031 13.8 0.0 1.4 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein MMR_HSR1 PF01926.18 gi|557693877|ref|YP_008796931.1| - 0.018 14.9 0.0 0.066 13.1 0.0 2.0 2 0 0 2 2 2 0 50S ribosome-binding GTPase SBDS_C PF09377.5 gi|557693877|ref|YP_008796931.1| - 0.033 13.8 0.1 0.3 10.8 0.0 2.4 3 0 0 3 3 3 0 SBDS protein C-terminal domain Peptidase_M22 PF00814.20 gi|557693878|ref|YP_008796932.1| - 3.4e-77 259.5 0.1 4e-77 259.3 0.1 1.0 1 0 0 1 1 1 1 Glycoprotease family BcrAD_BadFG PF01869.15 gi|557693878|ref|YP_008796932.1| - 0.00077 18.8 0.0 0.013 14.8 0.0 2.1 1 1 0 1 1 1 1 BadF/BadG/BcrA/BcrD ATPase family Ketoacyl-synt_C PF02801.17 gi|557693878|ref|YP_008796932.1| - 0.05 13.4 0.1 0.098 12.4 0.0 1.4 1 0 0 1 1 1 0 Beta-ketoacyl synthase, C-terminal domain ketoacyl-synt PF00109.21 gi|557693878|ref|YP_008796932.1| - 0.096 12.1 0.0 0.16 11.4 0.0 1.3 1 0 0 1 1 1 0 Beta-ketoacyl synthase, N-terminal domain Pkinase PF00069.20 gi|557693879|ref|YP_008796933.1| - 1.2e-09 37.6 0.0 1.8e-09 37.1 0.0 1.2 1 0 0 1 1 1 1 Protein kinase domain APH PF01636.18 gi|557693879|ref|YP_008796933.1| - 3.6e-09 36.6 2.0 3.9e-05 23.5 0.1 2.2 1 1 1 2 2 2 2 Phosphotransferase enzyme family RIO1 PF01163.17 gi|557693879|ref|YP_008796933.1| - 1e-08 34.7 0.0 1.5e-08 34.1 0.0 1.3 1 0 0 1 1 1 1 RIO1 family Kdo PF06293.9 gi|557693879|ref|YP_008796933.1| - 2.6e-07 29.9 0.0 2.7e-06 26.6 0.0 2.0 1 1 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family DUF4135 PF13575.1 gi|557693879|ref|YP_008796933.1| - 0.00071 18.6 0.0 0.00079 18.5 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4135) Pkinase_Tyr PF07714.12 gi|557693879|ref|YP_008796933.1| - 0.00087 18.4 0.0 0.0016 17.5 0.0 1.6 1 1 0 1 1 1 1 Protein tyrosine kinase APH_6_hur PF04655.9 gi|557693879|ref|YP_008796933.1| - 0.019 14.1 0.0 0.03 13.4 0.0 1.4 1 0 0 1 1 1 0 Aminoglycoside/hydroxyurea antibiotic resistance kinase Ham1p_like PF01725.11 gi|557693880|ref|YP_008796934.1| - 1.2e-48 164.9 0.0 1.4e-48 164.8 0.0 1.0 1 0 0 1 1 1 1 Ham1 family Ribosomal_S13_N PF08069.7 gi|557693881|ref|YP_008796935.1| - 2.5e-28 97.6 0.4 4.6e-28 96.8 0.3 1.4 1 0 0 1 1 1 1 Ribosomal S13/S15 N-terminal domain Ribosomal_S15 PF00312.17 gi|557693881|ref|YP_008796935.1| - 1.3e-17 63.3 0.4 1.8e-17 62.8 0.3 1.2 1 0 0 1 1 1 1 Ribosomal protein S15 NUDIX_2 PF13869.1 gi|557693881|ref|YP_008796935.1| - 0.033 13.5 0.1 0.11 11.8 0.0 1.7 1 1 1 2 2 2 0 Nucleotide hydrolase DHHA1 PF02272.14 gi|557693882|ref|YP_008796936.1| - 3.3e-14 52.3 2.2 5.6e-14 51.5 0.7 2.1 2 0 0 2 2 2 1 DHHA1 domain DHH PF01368.15 gi|557693882|ref|YP_008796936.1| - 2.8e-09 36.7 0.0 5.5e-09 35.8 0.0 1.4 1 0 0 1 1 1 1 DHH family VitK2_biosynth PF02621.9 gi|557693882|ref|YP_008796936.1| - 0.047 12.8 0.0 0.081 12.1 0.0 1.3 1 0 0 1 1 1 0 Menaquinone biosynthesis Pcc1 PF09341.5 gi|557693883|ref|YP_008796937.1| - 0.0013 18.7 0.1 0.0015 18.4 0.0 1.2 1 0 0 1 1 1 1 Transcription factor Pcc1 Ribosomal_S3Ae PF01015.13 gi|557693884|ref|YP_008796938.1| - 1.1e-58 197.7 0.5 1.3e-58 197.5 0.4 1.0 1 0 0 1 1 1 1 Ribosomal S3Ae family DUF2095 PF09868.4 gi|557693885|ref|YP_008796939.1| - 1.9e-26 92.3 0.6 2.5e-26 91.9 0.4 1.2 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2095) FtsK_SpoIIIE PF01580.13 gi|557693885|ref|YP_008796939.1| - 0.021 14.3 0.5 0.022 14.2 0.3 1.1 1 0 0 1 1 1 0 FtsK/SpoIIIE family SHOCT PF09851.4 gi|557693885|ref|YP_008796939.1| - 5.6 6.5 6.3 3.8 7.1 0.1 2.7 3 0 0 3 3 3 0 Short C-terminal domain MMR_HSR1_C PF08438.5 gi|557693886|ref|YP_008796940.1| - 1.7e-34 118.3 0.1 2.9e-34 117.5 0.0 1.4 1 0 0 1 1 1 1 GTPase of unknown function C-terminal MMR_HSR1 PF01926.18 gi|557693886|ref|YP_008796940.1| - 5.9e-19 68.1 0.0 1.4e-18 66.9 0.0 1.8 1 1 0 1 1 1 1 50S ribosome-binding GTPase TGS PF02824.16 gi|557693886|ref|YP_008796940.1| - 2.2e-08 33.7 0.0 4.5e-08 32.8 0.0 1.5 1 0 0 1 1 1 1 TGS domain FeoB_N PF02421.13 gi|557693886|ref|YP_008796940.1| - 3e-08 33.0 0.6 8.7e-07 28.3 0.1 2.7 3 0 0 3 3 3 1 Ferrous iron transport protein B GTP_EFTU PF00009.22 gi|557693886|ref|YP_008796940.1| - 0.0019 17.6 0.1 1.5 8.2 0.0 2.7 2 1 0 2 2 2 2 Elongation factor Tu GTP binding domain Miro PF08477.8 gi|557693886|ref|YP_008796940.1| - 0.0093 16.4 0.0 0.033 14.6 0.0 2.0 2 0 0 2 2 2 1 Miro-like protein ATP_bind_1 PF03029.12 gi|557693886|ref|YP_008796940.1| - 0.01 15.3 0.0 0.68 9.4 0.0 2.5 3 0 0 3 3 3 0 Conserved hypothetical ATP binding protein MobB PF03205.9 gi|557693886|ref|YP_008796940.1| - 0.073 12.7 0.1 0.17 11.5 0.1 1.6 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_21 PF13304.1 gi|557693886|ref|YP_008796940.1| - 0.093 12.6 0.2 0.14 12.0 0.1 1.2 1 0 0 1 1 1 0 AAA domain Dynamin_N PF00350.18 gi|557693886|ref|YP_008796940.1| - 0.12 12.1 0.2 13 5.5 0.0 2.4 1 1 1 2 2 2 0 Dynamin family Ribosomal_L15e PF00827.12 gi|557693887|ref|YP_008796941.1| - 1.2e-42 145.5 3.8 1.3e-42 145.4 2.6 1.0 1 0 0 1 1 1 1 Ribosomal L15 DNA_pol3_theta PF06440.6 gi|557693887|ref|YP_008796941.1| - 0.058 12.9 0.6 0.12 12.0 0.4 1.5 1 0 0 1 1 1 0 DNA polymerase III, theta subunit DUF3106 PF11304.3 gi|557693887|ref|YP_008796941.1| - 0.19 12.1 4.4 0.18 12.2 2.0 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF3106) RNA_binding PF01877.12 gi|557693888|ref|YP_008796942.1| - 7.6e-17 61.4 0.0 1.1e-16 60.8 0.0 1.3 1 1 0 1 1 1 1 RNA binding RNase_P_p30 PF01876.11 gi|557693889|ref|YP_008796943.1| - 0.013 14.7 0.0 0.038 13.2 0.0 1.7 1 1 0 1 1 1 0 RNase P subunit p30 RNase_P_Rpp14 PF01900.14 gi|557693890|ref|YP_008796944.1| - 3.5e-08 33.3 0.2 4.9e-08 32.8 0.1 1.3 1 0 0 1 1 1 1 Rpp14/Pop5 family Abi PF02517.11 gi|557693891|ref|YP_008796945.1| - 7.3e-14 51.6 4.3 7.3e-14 51.6 3.0 2.9 1 1 1 2 2 2 1 CAAX protease self-immunity TatC PF00902.13 gi|557693892|ref|YP_008796946.1| - 2.2e-36 125.3 22.0 2.9e-36 124.9 15.2 1.2 1 0 0 1 1 1 1 Sec-independent protein translocase protein (TatC) zinc_ribbon_2 PF13240.1 gi|557693892|ref|YP_008796946.1| - 0.00011 21.5 4.9 0.00016 21.0 3.4 1.3 1 0 0 1 1 1 1 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|557693892|ref|YP_008796946.1| - 0.014 14.5 3.7 0.024 13.8 2.6 1.3 1 0 0 1 1 1 0 zinc-ribbon domain DZR PF12773.2 gi|557693892|ref|YP_008796946.1| - 0.019 14.8 0.8 0.027 14.2 0.6 1.2 1 0 0 1 1 1 0 Double zinc ribbon DUF4006 PF13179.1 gi|557693892|ref|YP_008796946.1| - 7.5 6.1 6.1 1.1 8.8 0.6 2.3 1 1 1 2 2 2 0 Family of unknown function (DUF4006) MttA_Hcf106 PF02416.11 gi|557693893|ref|YP_008796947.1| - 5.8e-15 54.1 1.1 7.6e-14 50.5 0.4 2.1 2 0 0 2 2 2 1 mttA/Hcf106 family HK97-gp10_like PF04883.7 gi|557693893|ref|YP_008796947.1| - 0.3 12.0 1.6 0.39 11.6 1.1 1.2 1 0 0 1 1 1 0 Bacteriophage HK97-gp10, putative tail-component adh_short_C2 PF13561.1 gi|557693894|ref|YP_008796948.1| - 4.6e-30 105.1 0.0 5.6e-30 104.8 0.0 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.20 gi|557693894|ref|YP_008796948.1| - 3.5e-26 92.0 0.2 4.7e-26 91.6 0.1 1.2 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.5 gi|557693894|ref|YP_008796948.1| - 3e-12 46.5 0.1 4.5e-12 46.0 0.1 1.2 1 0 0 1 1 1 1 KR domain Epimerase PF01370.16 gi|557693894|ref|YP_008796948.1| - 5.2e-07 29.3 0.2 1e-06 28.4 0.2 1.6 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family NAD_binding_10 PF13460.1 gi|557693894|ref|YP_008796948.1| - 0.0057 16.6 0.6 0.022 14.7 0.1 2.1 2 1 0 2 2 2 1 NADH(P)-binding NmrA PF05368.8 gi|557693894|ref|YP_008796948.1| - 0.0076 15.5 0.1 0.095 11.9 0.0 2.2 2 0 0 2 2 2 1 NmrA-like family F420_oxidored PF03807.12 gi|557693894|ref|YP_008796948.1| - 0.091 13.1 0.0 0.19 12.1 0.0 1.6 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent Ribosomal_S13 PF00416.17 gi|557693895|ref|YP_008796949.1| - 1.8e-30 105.5 0.1 2.2e-30 105.2 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein S13/S18 U-box PF04564.10 gi|557693895|ref|YP_008796949.1| - 0.063 13.2 0.0 0.17 11.8 0.0 1.7 2 0 0 2 2 2 0 U-box domain Meth_synt_2 PF01717.13 gi|557693896|ref|YP_008796950.1| - 2.9e-28 98.7 0.0 2.1e-27 95.9 0.0 2.1 1 1 0 1 1 1 1 Cobalamin-independent synthase, Catalytic domain Meth_synt_1 PF08267.7 gi|557693896|ref|YP_008796950.1| - 2e-06 27.2 0.0 2.9e-06 26.8 0.0 1.2 1 0 0 1 1 1 1 Cobalamin-independent synthase, N-terminal domain Meth_synt_1 PF08267.7 gi|557693897|ref|YP_008796951.1| - 1.2e-31 110.1 0.0 1.4e-27 96.8 0.0 2.0 1 1 1 2 2 2 2 Cobalamin-independent synthase, N-terminal domain Meth_synt_2 PF01717.13 gi|557693897|ref|YP_008796951.1| - 2.2e-20 72.8 0.0 2.6e-20 72.6 0.0 1.0 1 0 0 1 1 1 1 Cobalamin-independent synthase, Catalytic domain Pyr_redox_2 PF07992.9 gi|557693898|ref|YP_008796952.1| - 1.2e-23 84.0 0.1 1.4e-23 83.8 0.0 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|557693898|ref|YP_008796952.1| - 3.1e-15 56.7 0.0 2e-12 47.5 0.0 2.4 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|557693898|ref|YP_008796952.1| - 1.5e-13 50.9 0.3 4.1e-09 36.7 0.1 3.4 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase K_oxygenase PF13434.1 gi|557693898|ref|YP_008796952.1| - 3.7e-09 35.9 0.0 2.8e-06 26.5 0.0 2.9 2 1 1 3 3 3 2 L-lysine 6-monooxygenase (NADPH-requiring) DAO PF01266.19 gi|557693898|ref|YP_008796952.1| - 4.3e-09 35.7 0.9 0.0018 17.2 0.0 2.7 2 1 0 3 3 3 2 FAD dependent oxidoreductase HI0933_like PF03486.9 gi|557693898|ref|YP_008796952.1| - 1.2e-06 27.2 0.0 0.0018 16.8 0.0 3.0 3 0 0 3 3 3 2 HI0933-like protein FAD_binding_2 PF00890.19 gi|557693898|ref|YP_008796952.1| - 5e-06 25.6 0.1 0.27 10.0 0.0 3.8 4 0 0 4 4 4 2 FAD binding domain NAD_binding_8 PF13450.1 gi|557693898|ref|YP_008796952.1| - 3.3e-05 23.8 0.0 9.3e-05 22.3 0.0 1.8 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Thi4 PF01946.12 gi|557693898|ref|YP_008796952.1| - 4.3e-05 22.7 0.0 0.00059 18.9 0.0 2.3 2 0 0 2 2 2 1 Thi4 family FMO-like PF00743.14 gi|557693898|ref|YP_008796952.1| - 0.00045 18.5 0.0 0.0007 17.9 0.0 1.2 1 0 0 1 1 1 1 Flavin-binding monooxygenase-like FAD_oxidored PF12831.2 gi|557693898|ref|YP_008796952.1| - 0.0023 17.0 0.0 0.0041 16.2 0.0 1.4 1 0 0 1 1 1 1 FAD dependent oxidoreductase NAD_binding_7 PF13241.1 gi|557693898|ref|YP_008796952.1| - 0.023 14.9 0.0 0.059 13.6 0.0 1.8 1 0 0 1 1 1 0 Putative NAD(P)-binding IlvN PF07991.7 gi|557693898|ref|YP_008796952.1| - 0.041 13.2 0.0 0.15 11.4 0.0 1.9 2 0 0 2 2 2 0 Acetohydroxy acid isomeroreductase, catalytic domain GIDA PF01134.17 gi|557693898|ref|YP_008796952.1| - 0.045 12.5 0.0 1 8.1 0.0 2.6 3 0 0 3 3 3 0 Glucose inhibited division protein A NAD_binding_9 PF13454.1 gi|557693898|ref|YP_008796952.1| - 0.087 12.5 0.8 9 6.0 0.0 3.0 3 1 1 4 4 4 0 FAD-NAD(P)-binding FAD_binding_3 PF01494.14 gi|557693898|ref|YP_008796952.1| - 0.17 10.8 0.2 1.4 7.9 0.0 2.4 3 0 0 3 3 3 0 FAD binding domain Antitoxin-MazE PF04014.13 gi|557693899|ref|YP_008796953.1| - 7.3e-11 41.5 0.0 1.5e-10 40.5 0.0 1.6 1 0 0 1 1 1 1 Antidote-toxin recognition MazE PhoU PF01895.14 gi|557693899|ref|YP_008796953.1| - 7.7e-10 39.0 0.9 2.9e-09 37.2 0.4 2.0 2 0 0 2 2 2 1 PhoU domain TOBE_3 PF12857.2 gi|557693899|ref|YP_008796953.1| - 0.015 15.1 0.2 0.072 12.9 0.0 2.2 2 0 0 2 2 2 0 TOBE-like domain TOBE PF03459.12 gi|557693899|ref|YP_008796953.1| - 0.072 13.2 0.6 0.13 12.3 0.0 1.7 2 0 0 2 2 2 0 TOBE domain YPEB PF14620.1 gi|557693899|ref|YP_008796953.1| - 0.12 11.4 0.0 0.18 10.7 0.0 1.3 1 0 0 1 1 1 0 YpeB sporulation Ribosomal_L22 PF00237.14 gi|557693900|ref|YP_008796954.1| - 1.8e-25 88.8 0.1 2.3e-25 88.5 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein L22p/L17e Ribosomal_S3_C PF00189.15 gi|557693901|ref|YP_008796955.1| - 1.9e-13 50.4 0.1 3.8e-13 49.4 0.0 1.5 1 0 0 1 1 1 1 Ribosomal protein S3, C-terminal domain KH_2 PF07650.12 gi|557693901|ref|YP_008796955.1| - 5.3e-12 45.1 0.1 1.1e-11 44.1 0.1 1.5 1 0 0 1 1 1 1 KH domain KH_3 PF13014.1 gi|557693901|ref|YP_008796955.1| - 0.0026 17.3 0.1 0.017 14.8 0.0 2.4 2 0 0 2 2 2 1 KH domain KH_1 PF00013.24 gi|557693901|ref|YP_008796955.1| - 0.0029 17.1 0.5 0.011 15.3 0.3 2.2 1 1 0 1 1 1 1 KH domain Tautomerase PF01361.16 gi|557693901|ref|YP_008796955.1| - 0.0095 15.5 0.2 0.021 14.3 0.1 1.5 1 0 0 1 1 1 1 Tautomerase enzyme Ribosomal_L29 PF00831.18 gi|557693902|ref|YP_008796956.1| - 3.7e-15 55.3 4.0 4.3e-15 55.1 2.7 1.1 1 0 0 1 1 1 1 Ribosomal L29 protein DUF1192 PF06698.6 gi|557693902|ref|YP_008796956.1| - 0.00051 19.7 7.9 0.024 14.4 0.6 2.1 2 0 0 2 2 2 2 Protein of unknown function (DUF1192) DUF3810 PF12725.2 gi|557693902|ref|YP_008796956.1| - 0.03 13.2 0.5 0.036 12.9 0.4 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3810) Enkurin PF13864.1 gi|557693902|ref|YP_008796956.1| - 0.033 14.3 2.8 0.041 14.1 1.9 1.3 1 1 0 1 1 1 0 Calmodulin-binding DUF4075 PF13294.1 gi|557693902|ref|YP_008796956.1| - 0.036 14.0 1.3 0.045 13.7 0.9 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4075) ING PF12998.2 gi|557693902|ref|YP_008796956.1| - 0.067 13.4 1.4 0.07 13.4 1.0 1.0 1 0 0 1 1 1 0 Inhibitor of growth proteins N-terminal histone-binding DUF972 PF06156.8 gi|557693902|ref|YP_008796956.1| - 0.11 12.8 1.0 0.15 12.4 0.7 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF972) TrmB PF01978.14 gi|557693902|ref|YP_008796956.1| - 0.17 11.6 1.7 0.69 9.6 0.4 1.9 1 1 1 2 2 2 0 Sugar-specific transcriptional regulator TrmB SpoOE-like PF09388.5 gi|557693902|ref|YP_008796956.1| - 0.18 11.3 2.0 0.19 11.2 0.3 1.9 2 0 0 2 2 2 0 Spo0E like sporulation regulatory protein YtxH PF12732.2 gi|557693902|ref|YP_008796956.1| - 0.49 10.7 2.2 11 6.5 0.1 2.1 2 0 0 2 2 2 0 YtxH-like protein Mitofilin PF09731.4 gi|557693902|ref|YP_008796956.1| - 1.3 7.6 6.1 1.3 7.5 4.2 1.0 1 0 0 1 1 1 0 Mitochondrial inner membrane protein Vps51 PF08700.6 gi|557693902|ref|YP_008796956.1| - 1.9 8.3 4.1 0.73 9.7 0.9 1.7 2 0 0 2 2 2 0 Vps51/Vps67 UPF0086 PF01868.11 gi|557693903|ref|YP_008796957.1| - 2.6e-10 39.8 0.4 3.4e-10 39.4 0.3 1.2 1 0 0 1 1 1 1 Domain of unknown function UPF0086 Colicin_D PF11429.3 gi|557693903|ref|YP_008796957.1| - 0.12 12.5 0.1 0.14 12.3 0.0 1.2 1 0 0 1 1 1 0 Colicin D Ribosomal_S17 PF00366.15 gi|557693904|ref|YP_008796958.1| - 6e-26 90.2 2.8 7.4e-26 89.9 1.9 1.1 1 0 0 1 1 1 1 Ribosomal protein S17 DNA_pol3_theta PF06440.6 gi|557693904|ref|YP_008796958.1| - 0.023 14.3 0.2 0.033 13.7 0.1 1.3 1 0 0 1 1 1 0 DNA polymerase III, theta subunit NSs PF11073.3 gi|557693904|ref|YP_008796958.1| - 0.038 13.2 0.1 0.05 12.8 0.1 1.1 1 0 0 1 1 1 0 Rift valley fever virus non structural protein (NSs) like zf-C3H1 PF10650.4 gi|557693904|ref|YP_008796958.1| - 0.12 11.8 1.3 0.19 11.2 0.9 1.3 1 0 0 1 1 1 0 Putative zinc-finger domain Ribosomal_L14 PF00238.14 gi|557693905|ref|YP_008796959.1| - 1e-32 112.4 0.1 1.2e-32 112.2 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L14p/L23e KOW PF00467.24 gi|557693906|ref|YP_008796960.1| - 3.2e-06 26.6 3.1 5e-06 26.0 2.1 1.4 1 0 0 1 1 1 1 KOW motif RNA_pol_Rpb6 PF01192.17 gi|557693906|ref|YP_008796960.1| - 0.038 13.7 0.1 0.38 10.5 0.0 2.5 3 0 0 3 3 3 0 RNA polymerase Rpb6 Ribosomal_S4e PF00900.15 gi|557693907|ref|YP_008796961.1| - 7e-22 76.8 0.0 1.4e-21 75.8 0.0 1.5 1 0 0 1 1 1 1 Ribosomal family S4e S4 PF01479.20 gi|557693907|ref|YP_008796961.1| - 1.2e-09 37.3 0.0 2.5e-09 36.4 0.0 1.5 1 0 0 1 1 1 1 S4 domain RS4NT PF08071.7 gi|557693907|ref|YP_008796961.1| - 4.6e-08 32.7 5.2 9.1e-08 31.8 3.6 1.5 1 0 0 1 1 1 1 RS4NT (NUC023) domain HTH_17 PF12728.2 gi|557693907|ref|YP_008796961.1| - 0.079 13.2 0.1 28 5.0 0.0 2.8 3 0 0 3 3 3 0 Helix-turn-helix domain Ribosomal_L5_C PF00673.16 gi|557693908|ref|YP_008796962.1| - 3.8e-21 74.6 0.1 3.6e-20 71.4 0.0 2.0 2 0 0 2 2 2 1 ribosomal L5P family C-terminus Ribosomal_L5 PF00281.14 gi|557693908|ref|YP_008796962.1| - 1.9e-16 59.6 0.1 3.7e-16 58.6 0.0 1.5 1 0 0 1 1 1 1 Ribosomal protein L5 Ribosomal_S14 PF00253.16 gi|557693909|ref|YP_008796963.1| - 1.4e-15 56.3 2.4 1.5e-15 56.3 1.7 1.0 1 0 0 1 1 1 1 Ribosomal protein S14p/S29e Zn_Tnp_IS1595 PF12760.2 gi|557693909|ref|YP_008796963.1| - 0.0037 17.0 2.5 0.0045 16.7 1.7 1.1 1 0 0 1 1 1 1 Transposase zinc-ribbon domain DUF4182 PF13790.1 gi|557693909|ref|YP_008796963.1| - 0.033 13.9 1.1 2.6 7.9 0.1 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4182) DZR PF12773.2 gi|557693909|ref|YP_008796963.1| - 0.038 13.7 0.1 0.056 13.2 0.1 1.3 1 0 0 1 1 1 0 Double zinc ribbon Ribosomal_L37ae PF01780.14 gi|557693909|ref|YP_008796963.1| - 0.058 13.2 0.7 0.068 13.0 0.5 1.1 1 0 0 1 1 1 0 Ribosomal L37ae protein family zf-TFIIIC PF12660.2 gi|557693909|ref|YP_008796963.1| - 0.064 13.1 0.5 0.072 13.0 0.3 1.1 1 0 0 1 1 1 0 Putative zinc-finger of transcription factor IIIC complex RRN7 PF11781.3 gi|557693909|ref|YP_008796963.1| - 0.066 12.7 7.4 0.92 9.0 0.6 2.2 2 0 0 2 2 2 0 RNA polymerase I-specific transcription initiation factor Rrn7 FYVE PF01363.16 gi|557693909|ref|YP_008796963.1| - 0.081 12.8 2.1 0.13 12.1 1.5 1.4 1 1 0 1 1 1 0 FYVE zinc finger zf-C4_ClpX PF06689.8 gi|557693909|ref|YP_008796963.1| - 0.1 12.1 3.7 0.65 9.5 0.5 2.1 1 1 1 2 2 2 0 ClpX C4-type zinc finger zf-C4pol PF14260.1 gi|557693909|ref|YP_008796963.1| - 0.21 11.6 1.3 3.5 7.6 0.0 2.0 1 1 1 2 2 2 0 C4-type zinc-finger of DNA polymerase delta zf-AD PF07776.10 gi|557693909|ref|YP_008796963.1| - 0.23 11.4 1.8 3.2 7.8 0.1 2.0 1 1 1 2 2 2 0 Zinc-finger associated domain (zf-AD) Zn_ribbon_recom PF13408.1 gi|557693909|ref|YP_008796963.1| - 0.23 11.7 3.4 0.29 11.4 2.3 1.2 1 0 0 1 1 1 0 Recombinase zinc beta ribbon domain A2L_zn_ribbon PF08792.5 gi|557693909|ref|YP_008796963.1| - 0.29 10.6 1.3 0.52 9.8 0.9 1.4 1 1 0 1 1 1 0 A2L zinc ribbon domain NinF PF05810.7 gi|557693909|ref|YP_008796963.1| - 0.32 10.8 1.9 7.3 6.4 1.1 2.0 1 1 1 2 2 2 0 NinF protein DUF3505 PF12013.3 gi|557693909|ref|YP_008796963.1| - 0.37 11.0 3.4 6.1 7.1 0.2 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF3505) zf-FPG_IleRS PF06827.9 gi|557693909|ref|YP_008796963.1| - 0.38 10.4 6.8 2.1 8.0 4.7 2.0 1 1 0 1 1 1 0 Zinc finger found in FPG and IleRS DUF2757 PF10955.3 gi|557693909|ref|YP_008796963.1| - 0.9 9.7 5.7 0.98 9.6 0.5 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF2757) Prim_Zn_Ribbon PF08273.7 gi|557693909|ref|YP_008796963.1| - 1.9 8.6 4.6 5.4 7.1 0.5 2.1 1 1 1 2 2 2 0 Zinc-binding domain of primase-helicase DUF1660 PF07874.6 gi|557693909|ref|YP_008796963.1| - 3.7 7.8 6.0 13 6.1 0.3 2.0 1 1 1 2 2 2 0 Prophage protein (DUF1660) Ribosomal_L40e PF01020.12 gi|557693909|ref|YP_008796963.1| - 4.4 6.9 5.8 14 5.3 0.3 2.2 1 1 1 2 2 2 0 Ribosomal L40e family Ribosomal_S8 PF00410.14 gi|557693910|ref|YP_008796964.1| - 5.7e-23 81.1 0.0 7.8e-23 80.7 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein S8 Ribosomal_L6 PF00347.18 gi|557693911|ref|YP_008796965.1| - 6.7e-19 68.1 9.1 1.9e-09 37.8 1.6 2.1 2 0 0 2 2 2 2 Ribosomal protein L6 FecR PF04773.8 gi|557693911|ref|YP_008796965.1| - 0.0021 18.2 1.1 0.0026 17.9 0.2 1.5 2 0 0 2 2 2 1 FecR protein YbbR PF07949.7 gi|557693911|ref|YP_008796965.1| - 0.077 13.1 7.7 0.31 11.2 1.6 3.3 2 2 1 3 3 3 0 YbbR-like protein Lipocalin_7 PF14651.1 gi|557693911|ref|YP_008796965.1| - 0.1 12.2 2.4 7 6.3 0.0 2.2 1 1 1 2 2 2 0 Lipocalin / cytosolic fatty-acid binding protein family DNA_pol3_beta PF00712.14 gi|557693911|ref|YP_008796965.1| - 0.13 12.1 0.0 1.9 8.4 0.0 2.2 2 0 0 2 2 2 0 DNA polymerase III beta subunit, N-terminal domain BON PF04972.12 gi|557693911|ref|YP_008796965.1| - 1 9.1 7.1 3.6 7.4 0.3 3.1 4 1 0 4 4 4 0 BON domain Ribosomal_L32e PF01655.13 gi|557693912|ref|YP_008796966.1| - 2.2e-35 121.0 0.0 2.6e-35 120.7 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L32 Ribosomal_L19e PF01280.15 gi|557693913|ref|YP_008796967.1| - 1.2e-45 154.8 4.0 1.6e-45 154.4 2.8 1.2 1 0 0 1 1 1 1 Ribosomal protein L19e Ribosomal_L18p PF00861.17 gi|557693914|ref|YP_008796968.1| - 3.7e-27 94.9 1.5 4.6e-27 94.5 1.0 1.1 1 0 0 1 1 1 1 Ribosomal L18p/L5e family Ribosomal_S5 PF00333.15 gi|557693915|ref|YP_008796969.1| - 1.7e-25 88.5 2.1 3.4e-25 87.5 1.5 1.5 1 0 0 1 1 1 1 Ribosomal protein S5, N-terminal domain Ribosomal_S5_C PF03719.10 gi|557693915|ref|YP_008796969.1| - 5.2e-22 76.8 0.1 1.5e-21 75.4 0.0 1.7 2 0 0 2 2 2 1 Ribosomal protein S5, C-terminal domain Ribosomal_L30 PF00327.15 gi|557693916|ref|YP_008796970.1| - 5.9e-12 44.9 0.1 9.7e-12 44.2 0.1 1.4 1 0 0 1 1 1 1 Ribosomal protein L30p/L7e PCRF PF03462.13 gi|557693916|ref|YP_008796970.1| - 0.12 12.0 0.1 0.18 11.5 0.1 1.3 1 0 0 1 1 1 0 PCRF domain Ribosomal_L18e PF00828.14 gi|557693917|ref|YP_008796971.1| - 3.6e-23 82.3 2.3 5.3e-23 81.8 1.6 1.3 1 0 0 1 1 1 1 Ribosomal protein L18e/L15 SecY PF00344.15 gi|557693918|ref|YP_008796972.1| - 1.1e-83 281.1 26.9 1.3e-83 280.8 18.6 1.1 1 0 0 1 1 1 1 SecY translocase DUF106 PF01956.11 gi|557693919|ref|YP_008796973.1| - 3.7e-10 39.5 4.5 8.7e-10 38.3 3.1 1.6 1 1 0 1 1 1 1 Integral membrane protein DUF106 60KD_IMP PF02096.15 gi|557693919|ref|YP_008796973.1| - 0.0006 19.5 0.1 0.00066 19.3 0.0 1.3 1 0 0 1 1 1 1 60Kd inner membrane protein DUF2207 PF09972.4 gi|557693919|ref|YP_008796973.1| - 0.0041 15.7 0.3 0.0045 15.6 0.2 1.1 1 0 0 1 1 1 1 Predicted membrane protein (DUF2207) DUF2208 PF09973.4 gi|557693919|ref|YP_008796973.1| - 0.0091 15.2 0.1 0.01 15.0 0.1 1.2 1 0 0 1 1 1 1 Predicted membrane protein (DUF2208) Trep_Strep PF09605.5 gi|557693919|ref|YP_008796973.1| - 0.031 13.9 0.6 0.14 11.7 0.0 2.0 2 0 0 2 2 2 0 Hypothetical bacterial integral membrane protein (Trep_Strep) DUF267 PF03268.9 gi|557693919|ref|YP_008796973.1| - 0.033 13.0 0.2 0.04 12.7 0.2 1.1 1 0 0 1 1 1 0 Caenorhabditis protein of unknown function, DUF267 7tm_6 PF02949.15 gi|557693919|ref|YP_008796973.1| - 0.1 11.4 0.0 0.12 11.2 0.0 1.2 1 0 0 1 1 1 0 7tm Odorant receptor Vma12 PF11712.3 gi|557693919|ref|YP_008796973.1| - 0.17 11.5 4.8 1 9.0 3.3 2.0 1 1 0 1 1 1 0 Endoplasmic reticulum-based factor for assembly of V-ATPase Cytidylate_kin2 PF13189.1 gi|557693920|ref|YP_008796974.1| - 2.3e-17 63.4 0.1 5.3e-17 62.2 0.1 1.6 1 1 0 1 1 1 1 Cytidylate kinase-like family AAA_18 PF13238.1 gi|557693920|ref|YP_008796974.1| - 6.6e-14 52.3 0.0 1e-13 51.7 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|557693920|ref|YP_008796974.1| - 2.4e-09 38.0 0.1 4.7e-09 37.1 0.1 1.4 1 1 0 1 1 1 1 AAA domain SKI PF01202.17 gi|557693920|ref|YP_008796974.1| - 8.3e-08 32.2 0.2 0.0016 18.3 0.1 2.2 2 0 0 2 2 2 2 Shikimate kinase AAA_33 PF13671.1 gi|557693920|ref|YP_008796974.1| - 0.0062 16.4 1.2 0.12 12.2 0.8 2.5 1 1 1 2 2 2 1 AAA domain AAA_30 PF13604.1 gi|557693920|ref|YP_008796974.1| - 0.011 15.3 0.2 1.6 8.2 0.0 2.1 2 0 0 2 2 2 0 AAA domain Cytidylate_kin PF02224.13 gi|557693920|ref|YP_008796974.1| - 0.015 14.7 0.5 0.031 13.7 0.3 1.5 1 1 0 1 1 1 0 Cytidylate kinase LacI PF00356.16 gi|557693920|ref|YP_008796974.1| - 0.072 12.7 0.4 12 5.5 0.0 2.8 2 1 0 2 2 2 0 Bacterial regulatory proteins, lacI family KOW PF00467.24 gi|557693921|ref|YP_008796975.1| - 0.00075 19.1 6.6 0.0012 18.5 4.6 1.3 1 0 0 1 1 1 1 KOW motif Ribosomal_L14e PF01929.12 gi|557693921|ref|YP_008796975.1| - 0.0067 16.7 0.1 0.0083 16.4 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L14 PUA PF01472.15 gi|557693922|ref|YP_008796976.1| - 3.3e-17 61.9 2.0 5.5e-17 61.2 1.4 1.4 1 0 0 1 1 1 1 PUA domain TruB_N PF01509.13 gi|557693922|ref|YP_008796976.1| - 1.6e-05 25.0 0.0 0.0014 18.7 0.0 2.5 1 1 0 1 1 1 1 TruB family pseudouridylate synthase (N terminal domain) RNase_PH_C PF03725.10 gi|557693922|ref|YP_008796976.1| - 0.034 14.0 1.4 0.43 10.5 0.0 2.7 3 0 0 3 3 3 0 3' exoribonuclease family, domain 2 VirD1 PF07328.6 gi|557693922|ref|YP_008796976.1| - 0.12 12.1 0.3 0.22 11.3 0.1 1.5 1 1 0 1 1 1 0 T-DNA border endonuclease VirD1 CBS PF00571.23 gi|557693923|ref|YP_008796977.1| - 1.1e-32 111.5 4.5 6.9e-18 64.1 0.3 2.0 2 0 0 2 2 2 2 CBS domain IF3_N PF05198.11 gi|557693923|ref|YP_008796977.1| - 0.0015 18.4 0.2 0.32 10.9 0.0 2.4 2 0 0 2 2 2 2 Translation initiation factor IF-3, N-terminal domain Ribosomal_L9_C PF03948.9 gi|557693923|ref|YP_008796977.1| - 0.0053 16.8 0.1 0.34 11.0 0.0 2.2 2 0 0 2 2 2 1 Ribosomal protein L9, C-terminal domain PRC PF05239.11 gi|557693923|ref|YP_008796977.1| - 0.5 10.2 2.6 5.3 6.9 0.0 2.3 2 1 0 2 2 2 0 PRC-barrel domain ABC_tran PF00005.22 gi|557693924|ref|YP_008796978.1| - 1e-29 103.6 0.0 1.4e-29 103.1 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|557693924|ref|YP_008796978.1| - 1.7e-22 79.5 0.7 2.9e-22 78.7 0.5 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_29 PF13555.1 gi|557693924|ref|YP_008796978.1| - 0.0043 16.5 0.0 0.0072 15.8 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_25 PF13481.1 gi|557693924|ref|YP_008796978.1| - 0.011 15.1 0.4 0.26 10.6 0.3 2.3 1 1 0 1 1 1 0 AAA domain AAA_22 PF13401.1 gi|557693924|ref|YP_008796978.1| - 0.013 15.6 0.7 0.1 12.7 0.5 2.1 1 1 0 1 1 1 0 AAA domain AAA_16 PF13191.1 gi|557693924|ref|YP_008796978.1| - 0.017 15.0 0.1 0.022 14.7 0.1 1.4 1 1 0 1 1 1 0 AAA ATPase domain AAA_21 PF13304.1 gi|557693924|ref|YP_008796978.1| - 0.044 13.7 0.1 8.6 6.2 0.1 2.1 1 1 1 2 2 2 0 AAA domain SMC_N PF02463.14 gi|557693924|ref|YP_008796978.1| - 0.065 12.4 0.1 3.6 6.7 0.0 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_18 PF13238.1 gi|557693924|ref|YP_008796978.1| - 0.086 13.1 0.0 0.14 12.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain MobB PF03205.9 gi|557693924|ref|YP_008796978.1| - 0.12 12.0 0.1 0.21 11.2 0.0 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B KaiC PF06745.8 gi|557693924|ref|YP_008796978.1| - 0.13 11.3 0.2 0.24 10.4 0.0 1.5 2 0 0 2 2 2 0 KaiC ATP-synt_C PF00137.16 gi|557693925|ref|YP_008796979.1| - 0.064 13.1 1.3 21 5.1 0.0 3.1 3 0 0 3 3 3 0 ATP synthase subunit C PPC PF04151.10 gi|557693925|ref|YP_008796979.1| - 0.079 13.9 0.0 0.26 12.2 0.0 1.9 2 0 0 2 2 2 0 Bacterial pre-peptidase C-terminal domain DUF1498 PF07385.7 gi|557693925|ref|YP_008796979.1| - 0.088 11.9 0.0 0.14 11.2 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1498) BNR_2 PF13088.1 gi|557693927|ref|YP_008796981.1| - 5.5e-23 81.6 2.5 5e-13 48.9 0.1 3.0 1 1 1 2 2 2 2 BNR repeat-like domain BNR PF02012.15 gi|557693927|ref|YP_008796981.1| - 7.7e-08 31.0 26.4 0.22 11.4 0.3 6.4 6 0 0 6 6 6 5 BNR/Asp-box repeat TIG PF01833.19 gi|557693927|ref|YP_008796981.1| - 0.003 17.5 0.6 0.011 15.7 0.1 2.2 2 0 0 2 2 2 1 IPT/TIG domain SBP_bac_5 PF00496.17 gi|557693928|ref|YP_008796982.1| - 8.5e-27 93.9 3.7 6.2e-23 81.2 0.1 3.1 3 0 0 3 3 3 3 Bacterial extracellular solute-binding proteins, family 5 Middle ATG16 PF08614.6 gi|557693929|ref|YP_008796983.1| - 6.4e-06 26.1 9.4 1e-05 25.4 6.5 1.3 1 0 0 1 1 1 1 Autophagy protein 16 (ATG16) TPR_MLP1_2 PF07926.7 gi|557693929|ref|YP_008796983.1| - 1.3e-05 24.9 5.1 2e-05 24.3 3.5 1.3 1 0 0 1 1 1 1 TPR/MLP1/MLP2-like protein DUF869 PF05911.6 gi|557693929|ref|YP_008796983.1| - 2.9e-05 22.5 8.6 3.9e-05 22.1 5.9 1.1 1 0 0 1 1 1 1 Plant protein of unknown function (DUF869) WEMBL PF05701.6 gi|557693929|ref|YP_008796983.1| - 4.1e-05 22.2 7.0 5.6e-05 21.7 4.9 1.1 1 0 0 1 1 1 1 Weak chloroplast movement under blue light Mnd1 PF03962.10 gi|557693929|ref|YP_008796983.1| - 4.7e-05 23.1 0.1 8.4e-05 22.3 0.1 1.4 1 0 0 1 1 1 1 Mnd1 family Tropomyosin PF00261.15 gi|557693929|ref|YP_008796983.1| - 9.4e-05 21.6 17.2 0.00096 18.3 5.2 1.9 1 1 1 2 2 2 2 Tropomyosin DUF677 PF05055.7 gi|557693929|ref|YP_008796983.1| - 0.00014 20.6 0.3 0.00022 20.0 0.2 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF677) Filament PF00038.16 gi|557693929|ref|YP_008796983.1| - 0.00017 21.2 6.7 0.00029 20.4 4.6 1.3 1 0 0 1 1 1 1 Intermediate filament protein GAS PF13851.1 gi|557693929|ref|YP_008796983.1| - 0.00019 20.6 9.7 0.00029 20.0 6.7 1.2 1 0 0 1 1 1 1 Growth-arrest specific micro-tubule binding Nup54 PF13874.1 gi|557693929|ref|YP_008796983.1| - 0.00028 20.5 8.0 0.00065 19.3 5.4 1.7 1 1 1 2 2 2 1 Nucleoporin complex subunit 54 FlaC_arch PF05377.6 gi|557693929|ref|YP_008796983.1| - 0.00048 19.9 13.6 0.0044 16.8 1.9 3.3 2 1 2 4 4 3 2 Flagella accessory protein C (FlaC) Reo_sigmaC PF04582.7 gi|557693929|ref|YP_008796983.1| - 0.00051 19.3 5.2 0.00071 18.8 3.6 1.2 1 0 0 1 1 1 1 Reovirus sigma C capsid protein DUF342 PF03961.8 gi|557693929|ref|YP_008796983.1| - 0.00059 18.3 0.8 0.00075 18.0 0.5 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF342) APG6 PF04111.7 gi|557693929|ref|YP_008796983.1| - 0.00063 18.8 8.0 0.00096 18.2 5.6 1.2 1 0 0 1 1 1 1 Autophagy protein Apg6 EzrA PF06160.7 gi|557693929|ref|YP_008796983.1| - 0.0007 17.9 3.9 0.001 17.3 2.7 1.1 1 0 0 1 1 1 1 Septation ring formation regulator, EzrA Laminin_II PF06009.7 gi|557693929|ref|YP_008796983.1| - 0.00086 19.0 7.0 0.0017 18.1 4.9 1.5 1 0 0 1 1 1 1 Laminin Domain II HemX PF04375.9 gi|557693929|ref|YP_008796983.1| - 0.00091 17.9 1.4 0.0014 17.3 1.0 1.2 1 0 0 1 1 1 1 HemX MscS_porin PF12795.2 gi|557693929|ref|YP_008796983.1| - 0.00094 18.5 16.0 0.01 15.1 12.0 1.8 2 0 0 2 2 2 1 Mechanosensitive ion channel porin domain LXG PF04740.7 gi|557693929|ref|YP_008796983.1| - 0.00096 19.0 3.2 0.0017 18.1 2.2 1.3 1 0 0 1 1 1 1 LXG domain of WXG superfamily Baculo_PEP_C PF04513.7 gi|557693929|ref|YP_008796983.1| - 0.00097 18.9 10.6 0.00097 18.9 7.4 1.9 2 0 0 2 2 1 1 Baculovirus polyhedron envelope protein, PEP, C terminus ALIX_LYPXL_bnd PF13949.1 gi|557693929|ref|YP_008796983.1| - 0.0012 17.8 6.1 0.0018 17.3 4.3 1.3 1 0 0 1 1 1 1 ALIX V-shaped domain binding to HIV V_ATPase_I PF01496.14 gi|557693929|ref|YP_008796983.1| - 0.0012 16.7 2.2 0.0019 16.1 1.5 1.3 1 0 0 1 1 1 1 V-type ATPase 116kDa subunit family Phlebovirus_NSM PF07246.6 gi|557693929|ref|YP_008796983.1| - 0.0013 17.9 3.0 0.002 17.3 2.1 1.2 1 0 0 1 1 1 1 Phlebovirus nonstructural protein NS-M FliJ PF02050.11 gi|557693929|ref|YP_008796983.1| - 0.0014 18.6 5.7 0.0014 18.6 3.9 1.5 2 0 0 2 2 1 1 Flagellar FliJ protein CALCOCO1 PF07888.6 gi|557693929|ref|YP_008796983.1| - 0.0017 16.7 5.1 0.0023 16.3 3.5 1.1 1 0 0 1 1 1 1 Calcium binding and coiled-coil domain (CALCOCO1) like Atg14 PF10186.4 gi|557693929|ref|YP_008796983.1| - 0.0021 17.0 5.9 0.0032 16.4 4.1 1.2 1 0 0 1 1 1 1 UV radiation resistance protein and autophagy-related subunit 14 DUF3584 PF12128.3 gi|557693929|ref|YP_008796983.1| - 0.0026 15.1 5.8 0.0034 14.8 4.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3584) DUF812 PF05667.6 gi|557693929|ref|YP_008796983.1| - 0.0033 15.9 1.7 0.0044 15.5 1.2 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF812) DUF745 PF05335.8 gi|557693929|ref|YP_008796983.1| - 0.0041 16.6 3.5 0.0059 16.1 2.4 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF745) Vps51 PF08700.6 gi|557693929|ref|YP_008796983.1| - 0.0042 16.9 4.3 0.3 10.9 0.5 2.6 2 0 0 2 2 2 1 Vps51/Vps67 IFT57 PF10498.4 gi|557693929|ref|YP_008796983.1| - 0.0044 15.8 6.1 0.0066 15.2 4.2 1.2 1 0 0 1 1 1 1 Intra-flagellar transport protein 57 DUF2353 PF09789.4 gi|557693929|ref|YP_008796983.1| - 0.0045 16.2 5.1 0.0071 15.6 3.6 1.2 1 0 0 1 1 1 1 Uncharacterized coiled-coil protein (DUF2353) Myosin_tail_1 PF01576.14 gi|557693929|ref|YP_008796983.1| - 0.0045 14.7 7.3 0.0059 14.4 5.1 1.1 1 0 0 1 1 1 1 Myosin tail LPP PF04728.8 gi|557693929|ref|YP_008796983.1| - 0.0047 16.6 6.5 0.17 11.7 0.1 3.3 2 1 1 3 3 3 1 Lipoprotein leucine-zipper AAA_13 PF13166.1 gi|557693929|ref|YP_008796983.1| - 0.0079 14.7 3.5 0.013 14.0 2.4 1.3 1 0 0 1 1 1 1 AAA domain PTRF_SDPR PF15237.1 gi|557693929|ref|YP_008796983.1| - 0.0083 15.5 6.1 0.012 15.0 4.2 1.2 1 0 0 1 1 1 1 PTRF/SDPR family DUF4446 PF14584.1 gi|557693929|ref|YP_008796983.1| - 0.0084 15.9 3.9 0.018 14.8 0.4 2.1 1 1 1 2 2 2 1 Protein of unknown function (DUF4446) DUF2968 PF11180.3 gi|557693929|ref|YP_008796983.1| - 0.0099 15.2 6.2 0.014 14.7 4.3 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF2968) Macoilin PF09726.4 gi|557693929|ref|YP_008796983.1| - 0.01 14.1 7.3 0.013 13.8 5.0 1.1 1 0 0 1 1 1 0 Transmembrane protein GP41 PF00517.12 gi|557693929|ref|YP_008796983.1| - 0.011 15.3 4.8 0.017 14.6 0.5 2.4 1 1 1 2 2 2 0 Retroviral envelope protein Tropomyosin_1 PF12718.2 gi|557693929|ref|YP_008796983.1| - 0.012 15.4 13.1 0.02 14.7 9.1 1.3 1 0 0 1 1 1 0 Tropomyosin like DUF1664 PF07889.7 gi|557693929|ref|YP_008796983.1| - 0.015 15.0 5.2 0.061 13.1 3.1 2.3 1 1 0 1 1 1 0 Protein of unknown function (DUF1664) TMF_DNA_bd PF12329.3 gi|557693929|ref|YP_008796983.1| - 0.017 14.9 8.4 0.017 14.9 5.8 2.8 2 1 1 3 3 2 0 TATA element modulatory factor 1 DNA binding DUF4140 PF13600.1 gi|557693929|ref|YP_008796983.1| - 0.02 15.3 7.0 0.05 14.0 4.8 1.8 1 1 0 1 1 1 0 N-terminal domain of unknown function (DUF4140) TBPIP PF07106.8 gi|557693929|ref|YP_008796983.1| - 0.021 14.3 9.5 0.063 12.8 6.6 1.8 1 1 0 1 1 1 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) Baculo_p24 PF05073.7 gi|557693929|ref|YP_008796983.1| - 0.022 14.3 1.1 0.033 13.7 0.8 1.2 1 0 0 1 1 1 0 Baculovirus P24 capsid protein bZIP_1 PF00170.16 gi|557693929|ref|YP_008796983.1| - 0.023 14.6 12.3 0.43 10.5 2.8 2.5 2 0 0 2 2 2 0 bZIP transcription factor CENP-F_leu_zip PF10473.4 gi|557693929|ref|YP_008796983.1| - 0.023 14.5 13.5 0.17 11.7 9.4 1.9 1 1 0 1 1 1 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DUF3450 PF11932.3 gi|557693929|ref|YP_008796983.1| - 0.026 13.8 8.5 0.06 12.5 5.9 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF3450) OmpH PF03938.9 gi|557693929|ref|YP_008796983.1| - 0.029 14.2 2.4 0.064 13.1 1.7 1.6 1 0 0 1 1 1 0 Outer membrane protein (OmpH-like) DivIVA PF05103.8 gi|557693929|ref|YP_008796983.1| - 0.029 14.4 7.9 0.055 13.5 5.4 1.4 1 0 0 1 1 1 0 DivIVA protein Erp_C PF06780.6 gi|557693929|ref|YP_008796983.1| - 0.03 14.1 2.6 0.063 13.1 1.8 1.5 1 0 0 1 1 1 0 Erp protein C-terminus ADIP PF11559.3 gi|557693929|ref|YP_008796983.1| - 0.033 14.1 13.3 0.07 13.0 8.8 1.7 1 1 0 1 1 1 0 Afadin- and alpha -actinin-Binding CCDC144C PF14915.1 gi|557693929|ref|YP_008796983.1| - 0.035 13.0 13.8 0.21 10.4 9.6 1.9 1 1 0 1 1 1 0 CCDC144C protein coiled-coil region Fmp27_WPPW PF10359.4 gi|557693929|ref|YP_008796983.1| - 0.038 12.4 2.6 0.049 12.0 1.8 1.1 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain DUF4200 PF13863.1 gi|557693929|ref|YP_008796983.1| - 0.042 13.8 6.3 0.077 12.9 4.4 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4200) DUF2203 PF09969.4 gi|557693929|ref|YP_008796983.1| - 0.044 13.9 0.1 0.082 13.1 0.1 1.4 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2203) MIF4G_like_2 PF09090.6 gi|557693929|ref|YP_008796983.1| - 0.044 12.9 2.5 0.077 12.2 1.7 1.4 1 0 0 1 1 1 0 MIF4G like DUF948 PF06103.6 gi|557693929|ref|YP_008796983.1| - 0.046 13.5 6.8 0.11 12.3 1.8 2.8 2 1 1 3 3 2 0 Bacterial protein of unknown function (DUF948) Spc7 PF08317.6 gi|557693929|ref|YP_008796983.1| - 0.058 12.0 8.8 0.089 11.4 6.1 1.2 1 0 0 1 1 1 0 Spc7 kinetochore protein Fez1 PF06818.10 gi|557693929|ref|YP_008796983.1| - 0.06 13.3 5.9 0.089 12.7 4.1 1.3 1 0 0 1 1 1 0 Fez1 DUF4164 PF13747.1 gi|557693929|ref|YP_008796983.1| - 0.062 13.4 11.7 2.9 8.0 4.8 2.5 1 1 1 2 2 2 0 Domain of unknown function (DUF4164) MAD PF05557.8 gi|557693929|ref|YP_008796983.1| - 0.069 11.2 10.7 0.093 10.8 7.4 1.1 1 0 0 1 1 1 0 Mitotic checkpoint protein DUF2730 PF10805.3 gi|557693929|ref|YP_008796983.1| - 0.076 12.7 7.8 0.3 10.8 1.6 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF2730) Fib_alpha PF08702.5 gi|557693929|ref|YP_008796983.1| - 0.084 13.0 7.9 0.17 12.0 5.5 1.4 1 0 0 1 1 1 0 Fibrinogen alpha/beta chain family DUF4472 PF14739.1 gi|557693929|ref|YP_008796983.1| - 0.084 13.3 7.1 0.15 12.5 4.9 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4472) HOOK PF05622.7 gi|557693929|ref|YP_008796983.1| - 0.086 10.6 10.2 0.13 10.1 7.0 1.1 1 0 0 1 1 1 0 HOOK protein IncA PF04156.9 gi|557693929|ref|YP_008796983.1| - 0.087 12.4 28.1 1.2 8.6 19.5 2.1 1 1 0 1 1 1 0 IncA protein DUF16 PF01519.11 gi|557693929|ref|YP_008796983.1| - 0.087 13.0 4.1 0.17 12.1 2.9 1.4 1 0 0 1 1 1 0 Protein of unknown function DUF16 Baculo_helicase PF04735.7 gi|557693929|ref|YP_008796983.1| - 0.1 9.9 0.1 0.1 9.9 0.1 1.0 1 0 0 1 1 1 0 Baculovirus DNA helicase Kinetocho_Slk19 PF12709.2 gi|557693929|ref|YP_008796983.1| - 0.11 12.6 11.1 3.4 7.8 0.4 3.4 2 1 2 4 4 3 0 Central kinetochore-associated Prefoldin_2 PF01920.15 gi|557693929|ref|YP_008796983.1| - 0.11 12.2 10.4 1.1 9.0 2.7 2.6 1 1 1 2 2 2 0 Prefoldin subunit Cluap1 PF10234.4 gi|557693929|ref|YP_008796983.1| - 0.12 11.5 5.3 0.18 11.0 3.7 1.2 1 0 0 1 1 1 0 Clusterin-associated protein-1 HAUS-augmin3 PF14932.1 gi|557693929|ref|YP_008796983.1| - 0.12 11.5 7.1 0.19 10.8 4.9 1.2 1 0 0 1 1 1 0 HAUS augmin-like complex subunit 3 CENP-Q PF13094.1 gi|557693929|ref|YP_008796983.1| - 0.13 12.2 13.2 0.43 10.5 9.2 1.7 1 1 0 1 1 1 0 CENP-Q, a CENPA-CAD centromere complex subunit CASP_C PF08172.7 gi|557693929|ref|YP_008796983.1| - 0.16 10.9 9.1 1 8.3 2.7 2.0 1 1 1 2 2 2 0 CASP C terminal Gp58 PF07902.6 gi|557693929|ref|YP_008796983.1| - 0.17 10.0 4.2 0.23 9.6 2.9 1.1 1 0 0 1 1 1 0 gp58-like protein COG2 PF06148.6 gi|557693929|ref|YP_008796983.1| - 0.18 11.6 6.5 1.8 8.4 4.5 2.0 1 1 0 1 1 1 0 COG (conserved oligomeric Golgi) complex component, COG2 NPV_P10 PF05531.7 gi|557693929|ref|YP_008796983.1| - 0.18 12.0 10.8 0.24 11.6 4.6 2.9 2 1 1 3 3 2 0 Nucleopolyhedrovirus P10 protein TMPIT PF07851.8 gi|557693929|ref|YP_008796983.1| - 0.22 10.5 1.8 0.37 9.8 1.3 1.3 1 0 0 1 1 1 0 TMPIT-like protein Bacillus_HBL PF05791.6 gi|557693929|ref|YP_008796983.1| - 0.24 10.7 5.7 0.48 9.7 4.0 1.5 1 0 0 1 1 1 0 Bacillus haemolytic enterotoxin (HBL) Prefoldin PF02996.12 gi|557693929|ref|YP_008796983.1| - 0.25 11.0 8.4 3.4 7.3 0.4 2.5 1 1 1 2 2 2 0 Prefoldin subunit DUF641 PF04859.7 gi|557693929|ref|YP_008796983.1| - 0.29 10.9 7.5 0.21 11.3 2.2 2.3 1 1 1 2 2 2 0 Plant protein of unknown function (DUF641) DivIC PF04977.10 gi|557693929|ref|YP_008796983.1| - 0.29 10.6 12.8 0.31 10.5 1.9 3.1 1 1 2 3 3 3 0 Septum formation initiator Spc24 PF08286.6 gi|557693929|ref|YP_008796983.1| - 0.29 10.8 12.2 1.6 8.4 2.5 2.3 1 1 1 2 2 2 0 Spc24 subunit of Ndc80 DASH_Dad2 PF08654.5 gi|557693929|ref|YP_008796983.1| - 0.34 10.9 5.0 0.2 11.6 0.5 2.2 1 1 1 2 2 2 0 DASH complex subunit Dad2 SlyX PF04102.7 gi|557693929|ref|YP_008796983.1| - 0.38 11.1 10.6 1.5 9.2 4.0 2.5 1 1 1 2 2 2 0 SlyX DUF724 PF05266.9 gi|557693929|ref|YP_008796983.1| - 0.39 10.3 5.3 0.59 9.7 3.7 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF724) AATF-Che1 PF13339.1 gi|557693929|ref|YP_008796983.1| - 0.41 10.8 8.3 0.97 9.5 5.6 1.7 1 1 1 2 2 2 0 Apoptosis antagonizing transcription factor DUF972 PF06156.8 gi|557693929|ref|YP_008796983.1| - 0.41 10.9 7.5 0.98 9.7 5.2 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF972) PspA_IM30 PF04012.7 gi|557693929|ref|YP_008796983.1| - 0.42 9.9 9.5 1.9 7.7 2.6 2.1 1 1 1 2 2 2 0 PspA/IM30 family DMPK_coil PF08826.5 gi|557693929|ref|YP_008796983.1| - 0.5 10.2 11.5 1.2 9.1 1.4 3.7 1 1 3 4 4 4 0 DMPK coiled coil domain like Prominin PF05478.6 gi|557693929|ref|YP_008796983.1| - 0.53 7.7 5.0 0.79 7.1 3.5 1.2 1 0 0 1 1 1 0 Prominin SNARE PF05739.14 gi|557693929|ref|YP_008796983.1| - 0.55 9.9 7.0 1.9 8.2 1.5 2.4 1 1 1 2 2 2 0 SNARE domain DUF2681 PF10883.3 gi|557693929|ref|YP_008796983.1| - 0.57 10.4 4.3 0.76 10.0 0.9 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF2681) FemAB PF02388.11 gi|557693929|ref|YP_008796983.1| - 0.63 8.6 4.3 1.3 7.6 2.5 1.7 2 0 0 2 2 2 0 FemAB family WXG100 PF06013.7 gi|557693929|ref|YP_008796983.1| - 0.67 9.9 4.1 2.7 8.0 2.0 2.5 2 1 1 3 3 2 0 Proteins of 100 residues with WXG FadA PF09403.5 gi|557693929|ref|YP_008796983.1| - 0.7 9.9 5.0 1.8 8.6 3.5 1.7 1 1 0 1 1 1 0 Adhesion protein FadA Sec2p PF06428.6 gi|557693929|ref|YP_008796983.1| - 0.72 9.7 10.7 3.3 7.5 5.9 2.2 1 1 1 2 2 2 0 GDP/GTP exchange factor Sec2p Seryl_tRNA_N PF02403.17 gi|557693929|ref|YP_008796983.1| - 0.75 9.8 7.3 4.2 7.4 4.7 2.1 1 1 0 1 1 1 0 Seryl-tRNA synthetase N-terminal domain EMP24_GP25L PF01105.19 gi|557693929|ref|YP_008796983.1| - 0.93 9.1 6.5 8.9 5.9 4.5 2.1 1 1 0 1 1 1 0 emp24/gp25L/p24 family/GOLD Phage_lysis PF03245.8 gi|557693929|ref|YP_008796983.1| - 1.5 8.8 11.1 7.9 6.4 0.3 2.2 1 1 1 2 2 2 0 Bacteriophage Rz lysis protein Cep57_CLD_2 PF14197.1 gi|557693929|ref|YP_008796983.1| - 1.9 8.4 18.9 0.27 11.2 3.3 3.6 2 1 2 4 4 3 0 Centrosome localisation domain of PPC89 DUF3552 PF12072.3 gi|557693929|ref|YP_008796983.1| - 2 7.5 9.5 3.9 6.6 6.6 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF3552) CorA PF01544.13 gi|557693929|ref|YP_008796983.1| - 2.2 7.2 11.0 2.4 7.1 6.7 1.6 1 1 0 1 1 1 0 CorA-like Mg2+ transporter protein DUF1515 PF07439.6 gi|557693929|ref|YP_008796983.1| - 2.4 7.9 5.8 1.1 9.0 1.5 2.2 1 1 2 3 3 2 0 Protein of unknown function (DUF1515) DUF4349 PF14257.1 gi|557693929|ref|YP_008796983.1| - 3 7.0 12.4 0.74 8.9 2.5 2.5 1 1 2 3 3 3 0 Domain of unknown function (DUF4349) Syntaxin-6_N PF09177.6 gi|557693929|ref|YP_008796983.1| - 4 7.9 7.1 12 6.4 3.8 2.2 1 1 0 1 1 1 0 Syntaxin 6, N-terminal Shugoshin_N PF07558.6 gi|557693929|ref|YP_008796983.1| - 6.2 6.6 15.3 0.31 10.8 1.7 3.0 3 1 0 3 3 2 0 Shugoshin N-terminal coiled-coil region Med4 PF10018.4 gi|557693929|ref|YP_008796983.1| - 7 5.9 10.2 19 4.5 7.1 1.7 1 1 0 1 1 1 0 Vitamin-D-receptor interacting Mediator subunit 4 BLOC1_2 PF10046.4 gi|557693929|ref|YP_008796983.1| - 7.3 6.7 14.6 4.6 7.4 2.3 3.2 3 1 1 4 4 3 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF904 PF06005.7 gi|557693929|ref|YP_008796983.1| - 7.4 6.9 14.0 18 5.7 1.1 2.5 1 1 1 2 2 2 0 Protein of unknown function (DUF904) FliD_N PF02465.13 gi|557693929|ref|YP_008796983.1| - 7.7 6.9 9.4 9.7 6.6 0.9 2.3 1 1 1 2 2 2 0 Flagellar hook-associated protein 2 N-terminus FUSC PF04632.7 gi|557693929|ref|YP_008796983.1| - 7.7 4.8 8.3 13 4.1 5.8 1.4 1 1 0 1 1 1 0 Fusaric acid resistance protein family BPD_transp_1 PF00528.17 gi|557693930|ref|YP_008796984.1| - 7.8e-35 120.0 11.4 7.8e-35 120.0 7.9 2.2 2 1 1 3 3 3 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.22 gi|557693931|ref|YP_008796985.1| - 9.1e-22 77.8 0.0 1.2e-21 77.4 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|557693931|ref|YP_008796985.1| - 2e-19 69.6 0.7 3.3e-19 69.0 0.5 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|557693931|ref|YP_008796985.1| - 1.2e-12 48.4 0.1 1.7e-11 44.6 0.0 2.0 1 1 1 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|557693931|ref|YP_008796985.1| - 5.2e-06 26.6 0.2 0.00018 21.6 0.1 2.1 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|557693931|ref|YP_008796985.1| - 9.4e-06 25.0 0.2 4.2e-05 22.8 0.1 1.8 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA PF00004.24 gi|557693931|ref|YP_008796985.1| - 0.0015 18.7 0.3 0.016 15.4 0.2 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) ABC_ATPase PF09818.4 gi|557693931|ref|YP_008796985.1| - 0.014 13.9 0.2 0.069 11.7 0.1 1.8 1 1 0 1 1 1 0 Predicted ATPase of the ABC class AAA_25 PF13481.1 gi|557693931|ref|YP_008796985.1| - 0.02 14.2 0.2 0.8 9.0 0.0 2.4 2 0 0 2 2 2 0 AAA domain AAA_10 PF12846.2 gi|557693931|ref|YP_008796985.1| - 0.03 13.7 1.4 0.12 11.8 0.0 2.1 1 1 0 2 2 2 0 AAA-like domain DUF3265 PF11665.3 gi|557693931|ref|YP_008796985.1| - 0.034 13.9 0.2 0.034 13.9 0.2 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF3265) AAA_15 PF13175.1 gi|557693931|ref|YP_008796985.1| - 0.036 13.1 0.8 0.07 12.1 0.1 1.6 2 0 0 2 2 2 0 AAA ATPase domain SbcCD_C PF13558.1 gi|557693931|ref|YP_008796985.1| - 0.037 13.9 0.0 0.11 12.4 0.0 1.8 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit PRK PF00485.13 gi|557693931|ref|YP_008796985.1| - 0.14 11.6 0.1 1.3 8.5 0.0 2.4 3 0 0 3 3 3 0 Phosphoribulokinase / Uridine kinase family AAA_16 PF13191.1 gi|557693931|ref|YP_008796985.1| - 0.23 11.4 0.5 0.41 10.6 0.3 1.7 1 1 0 1 1 1 0 AAA ATPase domain BPD_transp_1 PF00528.17 gi|557693932|ref|YP_008796986.1| - 3e-22 79.0 14.1 3e-22 79.0 9.8 1.8 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component z-alpha PF02295.12 gi|557693933|ref|YP_008796987.1| - 0.00017 21.3 0.1 0.00028 20.5 0.1 1.4 1 0 0 1 1 1 1 Adenosine deaminase z-alpha domain HTH_27 PF13463.1 gi|557693933|ref|YP_008796987.1| - 0.00047 20.4 0.0 0.00086 19.5 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain TrmB PF01978.14 gi|557693933|ref|YP_008796987.1| - 0.0043 16.7 0.0 0.006 16.2 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|557693933|ref|YP_008796987.1| - 0.0082 15.7 0.0 0.012 15.2 0.0 1.2 1 0 0 1 1 1 1 MarR family MarR PF01047.17 gi|557693933|ref|YP_008796987.1| - 0.012 15.3 0.2 0.024 14.3 0.1 1.5 2 0 0 2 2 2 0 MarR family Rrf2 PF02082.15 gi|557693933|ref|YP_008796987.1| - 0.03 14.4 0.0 0.059 13.5 0.0 1.5 1 1 1 2 2 2 0 Transcriptional regulator HTH_26 PF13443.1 gi|557693933|ref|YP_008796987.1| - 0.073 13.2 0.0 0.12 12.6 0.0 1.3 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain TFIIE_alpha PF02002.12 gi|557693933|ref|YP_008796987.1| - 0.1 12.1 0.0 0.22 11.0 0.0 1.5 1 1 1 2 2 2 0 TFIIE alpha subunit HTH_36 PF13730.1 gi|557693933|ref|YP_008796987.1| - 0.12 12.4 0.1 0.33 11.0 0.1 1.7 1 1 1 2 2 2 0 Helix-turn-helix domain RcbX PF02341.10 gi|557693933|ref|YP_008796987.1| - 0.13 12.4 0.0 0.22 11.6 0.0 1.3 1 0 0 1 1 1 0 RbcX protein Arch_ATPase PF01637.13 gi|557693934|ref|YP_008796988.1| - 1.1e-08 35.1 0.0 2.1e-08 34.1 0.0 1.5 1 0 0 1 1 1 1 Archaeal ATPase AAA_22 PF13401.1 gi|557693934|ref|YP_008796988.1| - 5.2e-08 33.1 0.0 1.4e-07 31.6 0.0 1.7 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|557693934|ref|YP_008796988.1| - 2e-05 24.6 0.2 0.00084 19.3 0.2 2.6 1 1 0 1 1 1 1 AAA ATPase domain NB-ARC PF00931.17 gi|557693934|ref|YP_008796988.1| - 0.0003 19.7 0.0 0.00059 18.7 0.0 1.4 1 0 0 1 1 1 1 NB-ARC domain Bac_DnaA PF00308.13 gi|557693934|ref|YP_008796988.1| - 0.00086 19.0 0.0 0.12 12.0 0.0 2.5 2 1 0 2 2 2 1 Bacterial dnaA protein AAA PF00004.24 gi|557693934|ref|YP_008796988.1| - 0.0015 18.7 0.0 0.0031 17.6 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) NACHT PF05729.7 gi|557693934|ref|YP_008796988.1| - 0.003 17.2 0.0 0.0055 16.3 0.0 1.4 1 0 0 1 1 1 1 NACHT domain MobB PF03205.9 gi|557693934|ref|YP_008796988.1| - 0.0058 16.3 0.0 0.026 14.2 0.0 2.1 3 0 0 3 3 3 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_17 PF13207.1 gi|557693934|ref|YP_008796988.1| - 0.012 16.3 0.2 0.057 14.2 0.0 2.0 1 1 0 2 2 2 0 AAA domain AAA_31 PF13614.1 gi|557693934|ref|YP_008796988.1| - 0.018 14.9 0.0 0.062 13.2 0.0 2.0 2 0 0 2 2 2 0 AAA domain ATP_bind_1 PF03029.12 gi|557693934|ref|YP_008796988.1| - 0.02 14.4 0.0 0.041 13.4 0.0 1.5 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein RuvB_N PF05496.7 gi|557693934|ref|YP_008796988.1| - 0.03 13.3 0.0 0.059 12.4 0.0 1.5 1 0 0 1 1 1 0 Holliday junction DNA helicase ruvB N-terminus PduV-EutP PF10662.4 gi|557693934|ref|YP_008796988.1| - 0.064 12.7 0.1 0.21 11.0 0.0 1.8 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation ABC_tran PF00005.22 gi|557693934|ref|YP_008796988.1| - 0.085 13.1 0.0 0.17 12.1 0.0 1.6 1 0 0 1 1 1 0 ABC transporter TFIID_90kDa PF04494.10 gi|557693934|ref|YP_008796988.1| - 0.088 12.8 1.7 2.3 8.2 0.1 2.9 2 1 1 3 3 3 0 WD40 associated region in TFIID subunit Zeta_toxin PF06414.7 gi|557693934|ref|YP_008796988.1| - 0.09 11.8 0.0 0.2 10.7 0.0 1.7 1 0 0 1 1 1 0 Zeta toxin GYD PF08734.6 gi|557693935|ref|YP_008796989.1| - 5.1e-09 35.7 0.0 5.6e-09 35.5 0.0 1.2 1 0 0 1 1 1 1 GYD domain AsnC_trans_reg PF01037.16 gi|557693935|ref|YP_008796989.1| - 0.025 14.2 0.0 0.04 13.6 0.0 1.4 1 1 0 1 1 1 0 AsnC family FlaG PF03646.10 gi|557693935|ref|YP_008796989.1| - 0.086 12.9 0.0 0.62 10.2 0.0 1.9 2 0 0 2 2 2 0 FlaG protein DAO PF01266.19 gi|557693937|ref|YP_008796991.1| - 4.5e-78 262.6 0.2 5.1e-78 262.4 0.1 1.0 1 0 0 1 1 1 1 FAD dependent oxidoreductase Trp_halogenase PF04820.9 gi|557693937|ref|YP_008796991.1| - 1.5e-06 27.1 1.2 0.0011 17.6 0.6 2.1 2 0 0 2 2 2 2 Tryptophan halogenase Thi4 PF01946.12 gi|557693937|ref|YP_008796991.1| - 1.2e-05 24.5 0.5 0.0001 21.4 0.2 2.1 2 0 0 2 2 2 1 Thi4 family FAD_oxidored PF12831.2 gi|557693937|ref|YP_008796991.1| - 1.9e-05 23.9 3.9 0.0003 19.9 2.7 2.1 1 1 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|557693937|ref|YP_008796991.1| - 8.9e-05 21.5 0.9 0.00014 20.8 0.3 1.5 2 0 0 2 2 2 1 FAD binding domain Pyr_redox_2 PF07992.9 gi|557693937|ref|YP_008796991.1| - 0.00013 21.9 0.1 0.0009 19.1 0.1 2.1 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|557693937|ref|YP_008796991.1| - 0.00017 21.6 0.1 0.051 13.6 0.1 2.2 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase ThiF PF00899.16 gi|557693937|ref|YP_008796991.1| - 0.00046 20.0 0.3 0.001 18.9 0.2 1.5 1 0 0 1 1 1 1 ThiF family NAD_binding_8 PF13450.1 gi|557693937|ref|YP_008796991.1| - 0.00063 19.7 1.0 0.0017 18.3 0.7 1.8 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.9 gi|557693937|ref|YP_008796991.1| - 0.0043 15.5 0.4 1.4 7.3 0.1 2.1 2 0 0 2 2 2 2 HI0933-like protein FAD_binding_3 PF01494.14 gi|557693937|ref|YP_008796991.1| - 0.0046 16.0 1.3 0.013 14.6 0.6 1.8 2 0 0 2 2 2 1 FAD binding domain GMC_oxred_N PF00732.14 gi|557693937|ref|YP_008796991.1| - 0.0048 16.0 0.2 0.32 10.0 0.0 2.2 2 0 0 2 2 2 1 GMC oxidoreductase Lycopene_cycl PF05834.7 gi|557693937|ref|YP_008796991.1| - 0.01 14.8 0.2 0.033 13.0 0.0 1.8 2 0 0 2 2 2 0 Lycopene cyclase protein Shikimate_DH PF01488.15 gi|557693937|ref|YP_008796991.1| - 0.011 15.7 0.0 0.062 13.4 0.0 2.0 2 0 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase GIDA PF01134.17 gi|557693937|ref|YP_008796991.1| - 0.035 12.9 0.5 0.065 12.0 0.4 1.4 1 0 0 1 1 1 0 Glucose inhibited division protein A Pyr_redox PF00070.22 gi|557693937|ref|YP_008796991.1| - 0.036 14.4 0.8 0.12 12.7 0.4 2.0 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.13 gi|557693937|ref|YP_008796991.1| - 0.067 12.8 0.1 0.15 11.7 0.1 1.6 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_9 PF13454.1 gi|557693937|ref|YP_008796991.1| - 0.11 12.2 1.1 0.93 9.2 0.1 2.1 2 0 0 2 2 2 0 FAD-NAD(P)-binding TrkA_N PF02254.13 gi|557693937|ref|YP_008796991.1| - 0.12 12.3 0.5 0.46 10.5 0.1 2.0 1 1 1 2 2 2 0 TrkA-N domain NAD_Gly3P_dh_N PF01210.18 gi|557693937|ref|YP_008796991.1| - 0.16 11.6 0.5 0.29 10.8 0.3 1.4 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NapD PF03927.8 gi|557693937|ref|YP_008796991.1| - 0.17 11.7 0.0 0.34 10.7 0.0 1.4 1 0 0 1 1 1 0 NapD protein HTH_23 PF13384.1 gi|557693938|ref|YP_008796992.1| - 0.04 13.5 0.1 0.1 12.2 0.1 1.7 1 0 0 1 1 1 0 Homeodomain-like domain DUF46 PF01864.12 gi|557693939|ref|YP_008796993.1| - 8.1e-40 136.5 5.7 2e-39 135.2 4.0 1.5 1 1 0 1 1 1 1 Putative integral membrane protein DUF46 CTP_transf_1 PF01148.15 gi|557693939|ref|YP_008796993.1| - 4e-07 29.9 12.8 8.1e-07 28.9 4.8 2.3 1 1 1 2 2 2 2 Cytidylyltransferase family DUF204 PF02659.10 gi|557693939|ref|YP_008796993.1| - 8.8 6.5 14.5 0.18 11.9 4.0 2.6 3 1 0 3 3 3 0 Domain of unknown function DUF RNase_H_2 PF13482.1 gi|557693940|ref|YP_008796994.1| - 0.0044 16.8 0.0 0.0054 16.5 0.0 1.1 1 0 0 1 1 1 1 RNase_H superfamily DNA_pol_B_exo2 PF10108.4 gi|557693940|ref|YP_008796994.1| - 0.02 14.4 0.0 0.031 13.8 0.0 1.2 1 1 0 1 1 1 0 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB DNA_pol_B_exo1 PF03104.14 gi|557693940|ref|YP_008796994.1| - 0.041 12.7 0.0 0.043 12.6 0.0 1.1 1 0 0 1 1 1 0 DNA polymerase family B, exonuclease domain AdoHcyase PF05221.12 gi|557693941|ref|YP_008796995.1| - 1.1e-58 198.3 0.0 1.4e-58 198.0 0.0 1.1 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase AdoHcyase_NAD PF00670.16 gi|557693941|ref|YP_008796995.1| - 2.1e-54 183.7 2.0 3.8e-54 182.9 0.5 2.0 2 0 0 2 2 2 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 2-Hacid_dh_C PF02826.14 gi|557693941|ref|YP_008796995.1| - 1.9e-11 43.4 0.4 3.7e-11 42.5 0.3 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain TrkA_N PF02254.13 gi|557693941|ref|YP_008796995.1| - 6.4e-05 22.9 0.1 0.00016 21.6 0.0 1.7 1 0 0 1 1 1 1 TrkA-N domain AlaDh_PNT_C PF01262.16 gi|557693941|ref|YP_008796995.1| - 0.0001 21.9 2.9 0.00036 20.1 1.4 1.9 1 1 1 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_7 PF13241.1 gi|557693941|ref|YP_008796995.1| - 0.0001 22.4 0.2 0.00027 21.1 0.1 1.7 1 0 0 1 1 1 1 Putative NAD(P)-binding IlvN PF07991.7 gi|557693941|ref|YP_008796995.1| - 0.00032 20.1 0.4 0.00063 19.1 0.3 1.5 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain ELFV_dehydrog PF00208.16 gi|557693941|ref|YP_008796995.1| - 0.0058 16.2 0.2 0.0089 15.6 0.1 1.3 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ADH_zinc_N PF00107.21 gi|557693941|ref|YP_008796995.1| - 0.018 14.6 0.2 0.059 12.9 0.1 1.9 1 0 0 1 1 1 0 Zinc-binding dehydrogenase 3HCDH_N PF02737.13 gi|557693941|ref|YP_008796995.1| - 0.033 13.8 1.7 0.073 12.7 1.2 1.7 1 1 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NifT PF06988.6 gi|557693941|ref|YP_008796995.1| - 0.077 12.4 0.0 0.17 11.3 0.0 1.5 1 0 0 1 1 1 0 NifT/FixU protein FdtA PF05523.6 gi|557693941|ref|YP_008796995.1| - 0.085 12.3 0.0 0.15 11.5 0.0 1.3 1 0 0 1 1 1 0 WxcM-like, C-terminal DUF3216 PF11505.3 gi|557693941|ref|YP_008796995.1| - 0.11 12.2 0.1 0.33 10.7 0.0 1.8 1 0 0 1 1 1 0 Protein of unknown function (DUF3216) DFP PF04127.10 gi|557693941|ref|YP_008796995.1| - 0.15 11.6 0.5 0.6 9.7 0.1 2.0 2 0 0 2 2 2 0 DNA / pantothenate metabolism flavoprotein YdfZ PF14001.1 gi|557693941|ref|YP_008796995.1| - 0.17 12.1 1.2 5.7 7.2 0.1 2.6 2 0 0 2 2 2 0 YdfZ protein eIF-5_eIF-2B PF01873.12 gi|557693942|ref|YP_008796996.1| - 1.7e-28 98.7 0.0 2.1e-28 98.5 0.0 1.1 1 0 0 1 1 1 1 Domain found in IF2B/IF5 TF_Zn_Ribbon PF08271.7 gi|557693942|ref|YP_008796996.1| - 0.014 14.6 1.1 0.034 13.4 0.3 1.9 2 0 0 2 2 2 0 TFIIB zinc-binding Cys_rich_KTR PF14205.1 gi|557693942|ref|YP_008796996.1| - 0.041 13.3 0.5 2 7.9 0.1 2.3 2 0 0 2 2 2 0 Cysteine-rich KTR FdhE PF04216.7 gi|557693942|ref|YP_008796996.1| - 0.13 11.9 0.3 0.12 12.0 0.2 1.4 1 1 0 1 1 1 0 Protein involved in formate dehydrogenase formation Zn-ribbon_8 PF09723.5 gi|557693942|ref|YP_008796996.1| - 0.27 11.1 2.0 2.1 8.3 1.4 2.1 1 1 0 1 1 1 0 Zinc ribbon domain DUF424 PF04242.8 gi|557693943|ref|YP_008796997.1| - 9.1e-20 70.5 0.1 9.9e-20 70.4 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF424) PK_C PF02887.11 gi|557693943|ref|YP_008796997.1| - 0.0008 18.9 0.0 0.00099 18.6 0.0 1.1 1 0 0 1 1 1 1 Pyruvate kinase, alpha/beta domain MazG PF03819.12 gi|557693944|ref|YP_008796998.1| - 3.3e-05 23.7 0.1 4.5e-05 23.3 0.0 1.2 1 0 0 1 1 1 1 MazG nucleotide pyrophosphohydrolase domain HMG-CoA_red PF00368.13 gi|557693945|ref|YP_008796999.1| - 4.3e-93 311.9 2.7 6.1e-93 311.4 1.9 1.2 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A reductase DUF4443 PF14544.1 gi|557693946|ref|YP_008797000.1| - 5.3e-11 42.3 0.0 9.2e-11 41.5 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4443) PaaX PF07848.7 gi|557693946|ref|YP_008797000.1| - 0.004 17.1 0.5 0.0093 15.9 0.3 1.6 1 0 0 1 1 1 1 PaaX-like protein HTH_45 PF14947.1 gi|557693946|ref|YP_008797000.1| - 0.01 15.6 0.0 0.019 14.7 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix Fe_dep_repress PF01325.14 gi|557693946|ref|YP_008797000.1| - 0.029 14.3 0.0 0.086 12.7 0.0 1.8 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain DUF4093 PF13331.1 gi|557693946|ref|YP_008797000.1| - 0.042 14.0 0.0 0.1 12.8 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4093) SRP54 PF00448.17 gi|557693947|ref|YP_008797001.1| - 8.9e-67 224.3 0.2 1.3e-66 223.8 0.1 1.2 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP54_N PF02881.14 gi|557693947|ref|YP_008797001.1| - 1.3e-08 34.8 1.1 3.3e-08 33.5 0.3 2.1 2 0 0 2 2 1 1 SRP54-type protein, helical bundle domain MobB PF03205.9 gi|557693947|ref|YP_008797001.1| - 1.4e-07 31.2 1.1 1.4e-06 28.0 0.0 2.5 3 0 0 3 3 2 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_16 PF13191.1 gi|557693947|ref|YP_008797001.1| - 1.8e-07 31.3 0.0 3.3e-07 30.4 0.0 1.5 1 0 0 1 1 1 1 AAA ATPase domain CbiA PF01656.18 gi|557693947|ref|YP_008797001.1| - 1.5e-06 27.7 3.3 9.9e-06 25.0 1.1 2.6 2 1 0 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain Zeta_toxin PF06414.7 gi|557693947|ref|YP_008797001.1| - 3.7e-06 26.1 0.0 6.3e-06 25.4 0.0 1.4 1 0 0 1 1 1 1 Zeta toxin AAA_22 PF13401.1 gi|557693947|ref|YP_008797001.1| - 5.2e-05 23.3 0.0 0.00052 20.1 0.0 2.2 1 1 1 2 2 2 1 AAA domain cobW PF02492.14 gi|557693947|ref|YP_008797001.1| - 6e-05 22.5 3.1 0.00027 20.4 0.4 2.6 2 1 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain KTI12 PF08433.5 gi|557693947|ref|YP_008797001.1| - 6.1e-05 22.3 0.0 0.00012 21.3 0.0 1.4 1 0 0 1 1 1 1 Chromatin associated protein KTI12 APS_kinase PF01583.15 gi|557693947|ref|YP_008797001.1| - 7.4e-05 22.4 0.0 0.00015 21.4 0.0 1.5 1 0 0 1 1 1 1 Adenylylsulphate kinase AAA_33 PF13671.1 gi|557693947|ref|YP_008797001.1| - 0.0001 22.2 0.1 0.00021 21.2 0.1 1.6 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.1 gi|557693947|ref|YP_008797001.1| - 0.0001 21.9 0.3 0.00018 21.1 0.2 1.4 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|557693947|ref|YP_008797001.1| - 0.00016 22.4 0.5 0.0006 20.6 0.1 2.3 2 1 0 2 2 2 1 AAA domain AAA PF00004.24 gi|557693947|ref|YP_008797001.1| - 0.00018 21.6 0.1 0.0024 18.0 0.0 2.4 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_19 PF13245.1 gi|557693947|ref|YP_008797001.1| - 0.00026 20.6 0.3 0.0006 19.5 0.2 1.7 1 1 0 1 1 1 1 Part of AAA domain UPF0079 PF02367.12 gi|557693947|ref|YP_008797001.1| - 0.00043 19.8 0.0 0.88 9.2 0.0 2.6 2 0 0 2 2 2 2 Uncharacterised P-loop hydrolase UPF0079 NTPase_1 PF03266.10 gi|557693947|ref|YP_008797001.1| - 0.00048 19.8 0.2 0.0055 16.4 0.2 2.4 1 1 0 1 1 1 1 NTPase ArgK PF03308.11 gi|557693947|ref|YP_008797001.1| - 0.00076 18.3 0.2 0.002 16.9 0.1 1.8 1 1 0 1 1 1 1 ArgK protein AAA_5 PF07728.9 gi|557693947|ref|YP_008797001.1| - 0.0015 18.2 0.0 0.0025 17.5 0.0 1.4 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_10 PF12846.2 gi|557693947|ref|YP_008797001.1| - 0.0022 17.5 0.1 0.011 15.1 0.0 2.2 2 0 0 2 2 2 1 AAA-like domain Abhydrolase_5 PF12695.2 gi|557693947|ref|YP_008797001.1| - 0.0037 17.0 0.6 0.036 13.8 0.4 2.1 1 1 0 1 1 1 1 Alpha/beta hydrolase family Glyco_transf_4 PF13439.1 gi|557693947|ref|YP_008797001.1| - 0.0041 16.8 0.1 0.007 16.1 0.0 1.4 1 1 0 1 1 1 1 Glycosyltransferase Family 4 ATP_bind_1 PF03029.12 gi|557693947|ref|YP_008797001.1| - 0.0042 16.6 0.4 0.019 14.5 0.1 2.3 2 1 0 2 2 2 1 Conserved hypothetical ATP binding protein AAA_28 PF13521.1 gi|557693947|ref|YP_008797001.1| - 0.007 16.3 0.1 0.018 15.0 0.1 1.6 1 1 0 1 1 1 1 AAA domain Thymidylate_kin PF02223.12 gi|557693947|ref|YP_008797001.1| - 0.007 15.7 0.0 0.027 13.8 0.0 1.9 2 0 0 2 2 2 1 Thymidylate kinase T2SE PF00437.15 gi|557693947|ref|YP_008797001.1| - 0.01 14.7 0.1 0.034 13.0 0.0 1.8 1 1 1 2 2 2 0 Type II/IV secretion system protein ResIII PF04851.10 gi|557693947|ref|YP_008797001.1| - 0.011 15.6 0.0 0.016 15.0 0.0 1.3 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit TrwB_AAD_bind PF10412.4 gi|557693947|ref|YP_008797001.1| - 0.011 14.3 0.0 0.019 13.6 0.0 1.3 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain AAA_23 PF13476.1 gi|557693947|ref|YP_008797001.1| - 0.012 15.9 0.0 0.021 15.1 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_29 PF13555.1 gi|557693947|ref|YP_008797001.1| - 0.012 15.1 0.0 0.025 14.1 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain ABC_tran PF00005.22 gi|557693947|ref|YP_008797001.1| - 0.016 15.4 0.0 0.023 14.9 0.0 1.4 1 0 0 1 1 1 0 ABC transporter SRPRB PF09439.5 gi|557693947|ref|YP_008797001.1| - 0.017 14.3 0.0 0.87 8.7 0.0 2.5 2 0 0 2 2 2 0 Signal recognition particle receptor beta subunit Arch_ATPase PF01637.13 gi|557693947|ref|YP_008797001.1| - 0.019 14.6 0.0 0.035 13.7 0.0 1.5 1 0 0 1 1 1 0 Archaeal ATPase LpxK PF02606.9 gi|557693947|ref|YP_008797001.1| - 0.019 13.9 0.1 0.052 12.5 0.0 1.7 2 0 0 2 2 2 0 Tetraacyldisaccharide-1-P 4'-kinase AAA_25 PF13481.1 gi|557693947|ref|YP_008797001.1| - 0.024 14.0 0.3 0.051 12.9 0.2 1.7 1 1 0 1 1 1 0 AAA domain AAA_31 PF13614.1 gi|557693947|ref|YP_008797001.1| - 0.031 14.1 0.1 0.28 11.1 0.0 2.4 3 0 0 3 3 3 0 AAA domain NACHT PF05729.7 gi|557693947|ref|YP_008797001.1| - 0.038 13.6 0.0 0.072 12.7 0.0 1.4 1 0 0 1 1 1 0 NACHT domain IstB_IS21 PF01695.12 gi|557693947|ref|YP_008797001.1| - 0.04 13.3 0.1 0.13 11.7 0.0 1.8 2 0 0 2 2 2 0 IstB-like ATP binding protein ArsA_ATPase PF02374.10 gi|557693947|ref|YP_008797001.1| - 0.052 12.5 0.1 0.16 10.9 0.0 1.8 2 0 0 2 2 2 0 Anion-transporting ATPase AAA_21 PF13304.1 gi|557693947|ref|YP_008797001.1| - 0.054 13.4 0.0 0.076 12.9 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_2 PF07724.9 gi|557693947|ref|YP_008797001.1| - 0.054 13.3 0.0 0.11 12.4 0.0 1.6 1 0 0 1 1 1 0 AAA domain (Cdc48 subfamily) AAA_11 PF13086.1 gi|557693947|ref|YP_008797001.1| - 0.056 13.0 0.0 0.079 12.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain ANF_receptor PF01094.23 gi|557693947|ref|YP_008797001.1| - 0.06 12.1 0.1 0.78 8.4 0.0 2.0 1 1 1 2 2 2 0 Receptor family ligand binding region DAP3 PF10236.4 gi|557693947|ref|YP_008797001.1| - 0.076 11.9 0.0 0.15 10.9 0.0 1.5 1 0 0 1 1 1 0 Mitochondrial ribosomal death-associated protein 3 Rad17 PF03215.10 gi|557693947|ref|YP_008797001.1| - 0.094 11.3 0.0 0.13 10.9 0.0 1.1 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein 6PF2K PF01591.13 gi|557693947|ref|YP_008797001.1| - 0.094 11.7 0.0 0.13 11.2 0.0 1.3 1 0 0 1 1 1 0 6-phosphofructo-2-kinase AAA_18 PF13238.1 gi|557693947|ref|YP_008797001.1| - 0.1 12.9 0.1 0.29 11.4 0.0 1.8 2 0 0 2 2 1 0 AAA domain G-alpha PF00503.15 gi|557693947|ref|YP_008797001.1| - 0.11 11.1 0.0 0.15 10.7 0.0 1.2 1 0 0 1 1 1 0 G-protein alpha subunit SMC_N PF02463.14 gi|557693947|ref|YP_008797001.1| - 0.11 11.6 0.0 0.21 10.8 0.0 1.4 1 0 0 1 1 1 0 RecF/RecN/SMC N terminal domain Zot PF05707.7 gi|557693947|ref|YP_008797001.1| - 0.13 11.7 0.0 0.19 11.1 0.0 1.4 1 0 0 1 1 1 0 Zonular occludens toxin (Zot) Prefoldin PF02996.12 gi|557693948|ref|YP_008797002.1| - 7.9e-20 70.7 0.7 1.1e-19 70.2 0.5 1.2 1 0 0 1 1 1 1 Prefoldin subunit Exonuc_VII_S PF02609.11 gi|557693948|ref|YP_008797002.1| - 0.0081 15.9 3.4 0.0081 15.9 2.4 2.5 3 1 1 4 4 3 1 Exonuclease VII small subunit YjcZ PF13990.1 gi|557693948|ref|YP_008797002.1| - 0.015 14.4 0.9 0.015 14.4 0.6 1.9 1 1 1 2 2 2 0 YjcZ-like protein DUF3318 PF11780.3 gi|557693948|ref|YP_008797002.1| - 0.032 13.8 0.3 0.04 13.4 0.2 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3318) UPF0242 PF06785.6 gi|557693948|ref|YP_008797002.1| - 0.041 12.5 3.8 0.053 12.2 2.6 1.2 1 1 0 1 1 1 0 Uncharacterised protein family (UPF0242) DUF2465 PF10239.4 gi|557693948|ref|YP_008797002.1| - 0.05 12.8 1.0 0.054 12.6 0.7 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2465) HMA PF00403.21 gi|557693948|ref|YP_008797002.1| - 0.053 13.6 0.3 2.8 8.1 0.0 2.3 2 1 0 2 2 2 0 Heavy-metal-associated domain TMF_DNA_bd PF12329.3 gi|557693948|ref|YP_008797002.1| - 0.056 13.2 7.5 1.5 8.6 1.2 2.2 2 0 0 2 2 2 0 TATA element modulatory factor 1 DNA binding DUF972 PF06156.8 gi|557693948|ref|YP_008797002.1| - 0.066 13.5 3.0 0.52 10.6 0.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF972) GP41 PF00517.12 gi|557693948|ref|YP_008797002.1| - 0.088 12.3 0.9 2.4 7.6 0.1 2.1 2 0 0 2 2 2 0 Retroviral envelope protein Tropomyosin_1 PF12718.2 gi|557693948|ref|YP_008797002.1| - 0.088 12.6 2.9 0.76 9.6 0.1 2.1 2 0 0 2 2 2 0 Tropomyosin like DivIC PF04977.10 gi|557693948|ref|YP_008797002.1| - 0.23 10.9 6.8 0.66 9.5 0.1 2.2 2 0 0 2 2 2 0 Septum formation initiator IncA PF04156.9 gi|557693948|ref|YP_008797002.1| - 0.29 10.6 12.3 0.51 9.9 2.5 2.1 1 1 0 2 2 2 0 IncA protein DUF2205 PF10224.4 gi|557693948|ref|YP_008797002.1| - 0.31 10.6 5.1 0.47 10.0 0.0 2.4 2 1 0 2 2 2 0 Predicted coiled-coil protein (DUF2205) Spc7 PF08317.6 gi|557693948|ref|YP_008797002.1| - 0.43 9.2 2.6 3.2 6.3 0.1 2.0 2 0 0 2 2 2 0 Spc7 kinetochore protein TPR_MLP1_2 PF07926.7 gi|557693948|ref|YP_008797002.1| - 0.43 10.3 6.2 2.9 7.6 0.5 2.1 2 0 0 2 2 2 0 TPR/MLP1/MLP2-like protein BLOC1_2 PF10046.4 gi|557693948|ref|YP_008797002.1| - 0.52 10.4 4.3 12 6.0 0.7 2.2 2 0 0 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Tropomyosin PF00261.15 gi|557693948|ref|YP_008797002.1| - 0.56 9.2 6.9 0.98 8.4 0.2 2.1 2 0 0 2 2 2 0 Tropomyosin Lzipper-MIP1 PF14389.1 gi|557693948|ref|YP_008797002.1| - 0.59 10.2 12.0 0.42 10.7 2.1 2.5 2 0 0 2 2 2 0 Leucine-zipper of ternary complex factor MIP1 Baculo_PEP_C PF04513.7 gi|557693948|ref|YP_008797002.1| - 0.6 9.9 3.0 11 5.8 0.2 2.1 2 0 0 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus TBCA PF02970.11 gi|557693948|ref|YP_008797002.1| - 0.67 10.0 3.9 1.5 8.9 0.1 2.2 2 0 0 2 2 2 0 Tubulin binding cofactor A DUF904 PF06005.7 gi|557693948|ref|YP_008797002.1| - 0.94 9.8 7.4 1.2 9.5 0.9 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF904) Med4 PF10018.4 gi|557693948|ref|YP_008797002.1| - 1.5 8.1 7.3 1.7 8.0 0.9 2.1 2 0 0 2 2 2 0 Vitamin-D-receptor interacting Mediator subunit 4 L27_2 PF09045.5 gi|557693948|ref|YP_008797002.1| - 1.7 8.2 5.7 13 5.4 0.8 3.2 2 1 1 3 3 3 0 L27_2 Prefoldin_2 PF01920.15 gi|557693948|ref|YP_008797002.1| - 1.8 8.3 6.3 3 7.6 0.2 2.4 1 1 1 2 2 2 0 Prefoldin subunit DivIVA PF05103.8 gi|557693948|ref|YP_008797002.1| - 2.3 8.2 8.1 1.2 9.2 0.7 2.1 2 0 0 2 2 2 0 DivIVA protein AF0941-like PF14591.1 gi|557693948|ref|YP_008797002.1| - 2.4 8.2 5.4 4.4 7.3 1.6 2.0 1 1 1 2 2 2 0 AF0941-like SlyX PF04102.7 gi|557693948|ref|YP_008797002.1| - 4.8 7.6 10.4 6.7 7.1 0.9 3.2 2 1 1 3 3 3 0 SlyX DUF4140 PF13600.1 gi|557693948|ref|YP_008797002.1| - 5.1 7.6 8.7 4.2 7.8 0.3 2.4 1 1 0 2 2 2 0 N-terminal domain of unknown function (DUF4140) HisKA PF00512.20 gi|557693948|ref|YP_008797002.1| - 7.4 6.6 9.1 9.2 6.3 0.7 3.2 2 2 1 3 3 3 0 His Kinase A (phospho-acceptor) domain eIF-6 PF01912.13 gi|557693949|ref|YP_008797003.1| - 3.3e-56 189.5 4.0 4.1e-56 189.2 2.7 1.1 1 0 0 1 1 1 1 eIF-6 family CW_binding_2 PF04122.7 gi|557693949|ref|YP_008797003.1| - 0.28 11.3 1.7 2.7 8.2 0.1 2.4 1 1 0 2 2 2 0 Putative cell wall binding repeat 2 Ribosomal_L31e PF01198.14 gi|557693950|ref|YP_008797004.1| - 1.9e-18 65.9 1.1 2.1e-18 65.7 0.8 1.2 1 0 0 1 1 1 1 Ribosomal protein L31e DUF1116 PF06545.6 gi|557693951|ref|YP_008797005.1| - 2.1e-85 285.2 0.0 2.9e-85 284.7 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1116) Cyclase PF04199.8 gi|557693952|ref|YP_008797006.1| - 9.8e-35 119.7 0.0 1.3e-34 119.3 0.0 1.2 1 0 0 1 1 1 1 Putative cyclase Ligase_CoA PF00549.14 gi|557693953|ref|YP_008797007.1| - 1.4e-29 102.6 0.0 4.1e-29 101.1 0.0 1.8 2 0 0 2 2 2 1 CoA-ligase CoA_binding PF02629.14 gi|557693953|ref|YP_008797007.1| - 1.3e-06 28.7 6.7 1.5e-05 25.3 0.2 3.2 3 0 0 3 3 3 2 CoA binding domain DUF2877 PF11392.3 gi|557693955|ref|YP_008797009.1| - 3.7e-13 49.6 0.0 5.8e-13 49.0 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF2877) Ald_Xan_dh_C2 PF02738.13 gi|557693957|ref|YP_008797011.1| - 1.3e-134 449.5 0.0 1.6e-134 449.2 0.0 1.0 1 0 0 1 1 1 1 Molybdopterin-binding domain of aldehyde dehydrogenase Ald_Xan_dh_C PF01315.17 gi|557693957|ref|YP_008797011.1| - 5.8e-26 90.7 0.0 5.8e-26 90.7 0.0 2.3 3 0 0 3 3 3 1 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain Carboxyl_trans PF01039.17 gi|557693958|ref|YP_008797012.1| - 2.8e-112 375.6 0.8 3.4e-112 375.3 0.6 1.0 1 0 0 1 1 1 1 Carboxyl transferase domain MdcE PF06833.6 gi|557693958|ref|YP_008797012.1| - 1.3e-06 27.8 0.2 3.1e-06 26.5 0.0 1.7 2 0 0 2 2 2 1 Malonate decarboxylase gamma subunit (MdcE) Ald_Xan_dh_C2 PF02738.13 gi|557693959|ref|YP_008797013.1| - 1.1e-128 429.9 0.0 1.6e-128 429.4 0.0 1.2 1 0 0 1 1 1 1 Molybdopterin-binding domain of aldehyde dehydrogenase Ald_Xan_dh_C PF01315.17 gi|557693959|ref|YP_008797013.1| - 5.8e-28 97.1 0.0 1.5e-27 95.8 0.0 1.8 1 0 0 1 1 1 1 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain FAD_binding_5 PF00941.16 gi|557693960|ref|YP_008797014.1| - 7.8e-50 168.6 0.0 1.1e-49 168.2 0.0 1.2 1 0 0 1 1 1 1 FAD binding domain in molybdopterin dehydrogenase CO_deh_flav_C PF03450.12 gi|557693960|ref|YP_008797014.1| - 1.4e-21 76.3 0.6 2.5e-21 75.5 0.4 1.4 1 0 0 1 1 1 1 CO dehydrogenase flavoprotein C-terminal domain Fer2_2 PF01799.15 gi|557693961|ref|YP_008797015.1| - 1.3e-26 92.2 0.0 1.3e-26 92.2 0.0 1.6 2 0 0 2 2 2 1 [2Fe-2S] binding domain Fer2 PF00111.22 gi|557693961|ref|YP_008797015.1| - 1.1e-07 31.4 3.0 1.6e-07 31.0 0.2 2.1 2 0 0 2 2 2 1 2Fe-2S iron-sulfur cluster binding domain Fer2_3 PF13085.1 gi|557693961|ref|YP_008797015.1| - 0.00052 19.8 0.0 0.00092 19.0 0.0 1.6 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer2_4 PF13510.1 gi|557693961|ref|YP_008797015.1| - 0.021 14.6 0.3 0.075 12.8 0.2 2.0 1 1 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain ThiS PF02597.15 gi|557693962|ref|YP_008797016.1| - 1.8e-10 41.1 0.7 2.2e-09 37.6 0.5 2.0 1 1 0 1 1 1 1 ThiS family Urm1 PF09138.6 gi|557693962|ref|YP_008797016.1| - 0.0041 17.1 0.0 0.0047 17.0 0.0 1.1 1 0 0 1 1 1 1 Urm1 (Ubiquitin related modifier) TGS PF02824.16 gi|557693962|ref|YP_008797016.1| - 0.024 14.4 0.0 0.033 14.0 0.0 1.3 1 0 0 1 1 1 0 TGS domain DUF3354 PF11834.3 gi|557693962|ref|YP_008797016.1| - 0.1 12.2 0.0 1.3 8.7 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF3354) Amidohydro_4 PF13147.1 gi|557693963|ref|YP_008797017.1| - 1.9e-17 64.2 0.1 3.2e-17 63.4 0.0 1.4 1 1 0 1 1 1 1 Amidohydrolase Amidohydro_3 PF07969.6 gi|557693963|ref|YP_008797017.1| - 1.7e-16 60.4 1.3 5.7e-08 32.3 0.0 2.7 1 1 1 2 2 2 2 Amidohydrolase family Amidohydro_5 PF13594.1 gi|557693963|ref|YP_008797017.1| - 9.4e-08 31.7 0.0 1.8e-07 30.8 0.0 1.5 1 0 0 1 1 1 1 Amidohydrolase Amidohydro_1 PF01979.15 gi|557693963|ref|YP_008797017.1| - 1.8e-06 27.8 0.0 0.00044 20.0 0.0 2.2 1 1 0 2 2 2 2 Amidohydrolase family ABC_tran PF00005.22 gi|557693964|ref|YP_008797018.1| - 9.6e-51 171.6 0.0 2.7e-31 108.6 0.0 2.2 2 0 0 2 2 2 2 ABC transporter AAA_21 PF13304.1 gi|557693964|ref|YP_008797018.1| - 2.3e-07 31.0 0.1 0.00093 19.2 0.0 2.3 1 1 1 2 2 2 2 AAA domain AAA_15 PF13175.1 gi|557693964|ref|YP_008797018.1| - 0.00039 19.5 0.0 0.019 14.0 0.0 2.2 1 1 1 2 2 2 1 AAA ATPase domain AAA_22 PF13401.1 gi|557693964|ref|YP_008797018.1| - 0.0013 18.8 0.0 0.0091 16.1 0.0 2.2 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.1 gi|557693964|ref|YP_008797018.1| - 0.0055 17.0 0.2 0.013 15.8 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA_29 PF13555.1 gi|557693964|ref|YP_008797018.1| - 0.0064 16.0 0.0 0.022 14.2 0.0 1.9 1 0 0 1 1 1 1 P-loop containing region of AAA domain DUF258 PF03193.11 gi|557693964|ref|YP_008797018.1| - 0.0067 15.6 0.1 0.041 13.0 0.0 2.0 2 0 0 2 2 2 1 Protein of unknown function, DUF258 SMC_N PF02463.14 gi|557693964|ref|YP_008797018.1| - 0.0094 15.2 0.0 1.4 8.1 0.0 2.5 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.1 gi|557693964|ref|YP_008797018.1| - 0.019 14.9 0.0 1 9.3 0.0 2.3 2 0 0 2 2 2 0 AAA ATPase domain AAA_10 PF12846.2 gi|557693964|ref|YP_008797018.1| - 0.1 11.9 0.0 0.5 9.7 0.0 2.1 3 0 0 3 3 3 0 AAA-like domain PK_C PF02887.11 gi|557693964|ref|YP_008797018.1| - 0.12 11.9 0.0 0.55 9.7 0.0 2.0 2 0 0 2 2 2 0 Pyruvate kinase, alpha/beta domain BPD_transp_2 PF02653.11 gi|557693965|ref|YP_008797019.1| - 4.5e-35 120.9 24.7 4.5e-35 120.9 17.1 1.6 2 0 0 2 2 2 1 Branched-chain amino acid transport system / permease component BPD_transp_2 PF02653.11 gi|557693966|ref|YP_008797020.1| - 1.6e-31 109.2 28.7 3.2e-31 108.2 19.9 1.5 1 1 0 1 1 1 1 Branched-chain amino acid transport system / permease component Bacteriocin_IIc PF10439.4 gi|557693966|ref|YP_008797020.1| - 3.4 7.8 9.7 2.8 8.1 1.9 2.5 2 0 0 2 2 2 0 Bacteriocin class II with double-glycine leader peptide Bmp PF02608.9 gi|557693967|ref|YP_008797021.1| - 7.8e-24 83.9 0.0 1.1e-23 83.4 0.0 1.2 1 0 0 1 1 1 1 Basic membrane protein Bmp PF02608.9 gi|557693968|ref|YP_008797022.1| - 1.2e-24 86.6 0.0 1.6e-24 86.1 0.0 1.1 1 0 0 1 1 1 1 Basic membrane protein HEAT_2 PF13646.1 gi|557693968|ref|YP_008797022.1| - 0.081 13.2 0.0 0.27 11.5 0.0 1.8 2 0 0 2 2 2 0 HEAT repeats ABC_tran PF00005.22 gi|557693969|ref|YP_008797023.1| - 5e-30 104.5 0.0 8.2e-17 61.7 0.0 2.6 3 0 0 3 3 3 2 ABC transporter AAA_23 PF13476.1 gi|557693969|ref|YP_008797023.1| - 0.00019 21.8 0.0 0.00033 21.0 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_21 PF13304.1 gi|557693969|ref|YP_008797023.1| - 0.00025 21.1 5.1 0.00098 19.1 0.0 2.3 2 0 0 2 2 2 1 AAA domain SMC_N PF02463.14 gi|557693969|ref|YP_008797023.1| - 0.00048 19.4 0.7 0.59 9.3 0.1 2.4 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_22 PF13401.1 gi|557693969|ref|YP_008797023.1| - 0.00078 19.5 0.8 0.0093 16.1 0.6 2.2 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|557693969|ref|YP_008797023.1| - 0.0022 17.4 0.0 0.0049 16.3 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|557693969|ref|YP_008797023.1| - 0.0035 17.3 0.0 0.011 15.7 0.0 1.8 1 1 0 1 1 1 1 AAA ATPase domain DUF258 PF03193.11 gi|557693969|ref|YP_008797023.1| - 0.0056 15.8 0.0 0.011 14.9 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_17 PF13207.1 gi|557693969|ref|YP_008797023.1| - 0.0082 16.9 0.0 0.033 14.9 0.0 2.2 2 1 0 2 2 2 1 AAA domain AAA_10 PF12846.2 gi|557693969|ref|YP_008797023.1| - 0.018 14.4 0.1 0.46 9.8 0.0 2.1 2 0 0 2 2 2 0 AAA-like domain BPD_transp_2 PF02653.11 gi|557693970|ref|YP_008797024.1| - 8.4e-59 198.7 76.4 1.6e-29 102.7 21.3 2.4 2 0 0 2 2 2 2 Branched-chain amino acid transport system / permease component Uso1_p115_C PF04871.8 gi|557693971|ref|YP_008797025.1| - 0.1 12.5 2.1 0.2 11.5 1.5 1.5 1 0 0 1 1 1 0 Uso1 / p115 like vesicle tethering protein, C terminal region Polyoma_coat PF00718.15 gi|557693971|ref|YP_008797025.1| - 0.13 11.0 0.0 0.21 10.4 0.0 1.2 1 0 0 1 1 1 0 Polyomavirus coat protein ELFV_dehydrog PF00208.16 gi|557693972|ref|YP_008797026.1| - 2.7e-53 181.0 0.0 3.5e-53 180.6 0.0 1.1 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ELFV_dehydrog_N PF02812.13 gi|557693972|ref|YP_008797026.1| - 7.3e-34 116.1 0.0 1.5e-33 115.1 0.0 1.5 1 0 0 1 1 1 1 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 2-Hacid_dh_C PF02826.14 gi|557693972|ref|YP_008797026.1| - 0.0092 15.1 0.0 0.02 14.0 0.0 1.5 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_7 PF13241.1 gi|557693972|ref|YP_008797026.1| - 0.068 13.4 0.0 0.18 12.0 0.0 1.7 2 0 0 2 2 2 0 Putative NAD(P)-binding Gp_dh_N PF00044.19 gi|557693972|ref|YP_008797026.1| - 0.14 12.1 0.4 0.63 9.9 0.2 2.0 1 1 0 1 1 1 0 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain DUF488 PF04343.8 gi|557693973|ref|YP_008797027.1| - 6.7e-29 100.7 0.0 7.9e-29 100.5 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function, DUF488 UPF0066 PF01980.11 gi|557693974|ref|YP_008797028.1| - 8.5e-37 125.7 0.0 1.1e-36 125.3 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised protein family UPF0066 EamA PF00892.15 gi|557693975|ref|YP_008797029.1| - 5e-10 39.4 16.8 6e-10 39.2 11.7 1.1 1 0 0 1 1 1 1 EamA-like transporter family EmrE PF13536.1 gi|557693975|ref|YP_008797029.1| - 0.097 12.8 19.0 0.099 12.8 10.5 2.1 1 1 1 2 2 2 0 Multidrug resistance efflux transporter TPT PF03151.11 gi|557693975|ref|YP_008797029.1| - 0.75 9.4 9.7 1.8 8.1 6.7 1.9 1 1 0 1 1 1 0 Triose-phosphate Transporter family Pox_A14 PF05767.7 gi|557693975|ref|YP_008797029.1| - 5.7 6.9 6.6 0.5 10.3 0.9 1.9 2 0 0 2 2 2 0 Poxvirus virion envelope protein A14 DUF202 PF02656.10 gi|557693975|ref|YP_008797029.1| - 7 6.9 12.4 11 6.3 1.4 2.5 2 1 0 2 2 2 0 Domain of unknown function (DUF202) YfhO PF09586.5 gi|557693975|ref|YP_008797029.1| - 9.8 4.0 8.2 11 3.9 5.7 1.1 1 0 0 1 1 1 0 Bacterial membrane protein YfhO DUF650 PF04894.7 gi|557693976|ref|YP_008797030.1| - 4.7e-72 242.7 0.0 6.4e-72 242.3 0.0 1.1 1 0 0 1 1 1 1 Archaeal protein of unknown function (DUF650) DUF651 PF04895.7 gi|557693976|ref|YP_008797030.1| - 3e-28 97.6 0.0 5.4e-28 96.8 0.0 1.4 1 0 0 1 1 1 1 Archaeal protein of unknown function (DUF651) T2SE PF00437.15 gi|557693977|ref|YP_008797031.1| - 5.4e-11 41.9 0.0 8.3e-11 41.2 0.0 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_17 PF13207.1 gi|557693977|ref|YP_008797031.1| - 1.4e-05 25.8 0.0 4.3e-05 24.3 0.0 1.9 2 0 0 2 2 1 1 AAA domain AAA_18 PF13238.1 gi|557693977|ref|YP_008797031.1| - 0.00015 22.0 0.0 0.00043 20.5 0.0 1.9 1 0 0 1 1 1 1 AAA domain AAA_14 PF13173.1 gi|557693977|ref|YP_008797031.1| - 0.00016 21.5 0.0 0.00035 20.4 0.0 1.5 1 0 0 1 1 1 1 AAA domain RuvB_N PF05496.7 gi|557693977|ref|YP_008797031.1| - 0.002 17.1 0.0 0.016 14.2 0.0 2.1 2 0 0 2 2 2 1 Holliday junction DNA helicase ruvB N-terminus AAA PF00004.24 gi|557693977|ref|YP_008797031.1| - 0.0027 17.8 0.0 0.006 16.7 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.1 gi|557693977|ref|YP_008797031.1| - 0.0039 17.1 0.0 0.008 16.1 0.0 1.5 1 0 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|557693977|ref|YP_008797031.1| - 0.0043 17.1 0.0 0.0098 16.0 0.0 1.5 1 0 0 1 1 1 1 AAA domain IstB_IS21 PF01695.12 gi|557693977|ref|YP_008797031.1| - 0.0046 16.4 0.0 0.008 15.6 0.0 1.3 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_5 PF07728.9 gi|557693977|ref|YP_008797031.1| - 0.0056 16.4 0.0 0.011 15.4 0.0 1.6 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_33 PF13671.1 gi|557693977|ref|YP_008797031.1| - 0.0058 16.5 0.0 0.015 15.1 0.0 1.7 1 0 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|557693977|ref|YP_008797031.1| - 0.006 16.3 0.0 0.018 14.7 0.0 1.8 1 0 0 1 1 1 1 Part of AAA domain Sigma54_activ_2 PF14532.1 gi|557693977|ref|YP_008797031.1| - 0.0062 16.5 0.0 0.012 15.6 0.0 1.4 1 0 0 1 1 1 1 Sigma-54 interaction domain AAA_25 PF13481.1 gi|557693977|ref|YP_008797031.1| - 0.01 15.2 0.0 0.024 14.0 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_28 PF13521.1 gi|557693977|ref|YP_008797031.1| - 0.019 14.9 0.0 0.053 13.4 0.0 1.7 1 1 1 2 2 1 0 AAA domain FtsK_SpoIIIE PF01580.13 gi|557693977|ref|YP_008797031.1| - 0.029 13.8 0.0 0.15 11.5 0.0 2.0 2 0 0 2 2 2 0 FtsK/SpoIIIE family ATP_bind_1 PF03029.12 gi|557693977|ref|YP_008797031.1| - 0.038 13.5 0.0 0.06 12.8 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein RNA_helicase PF00910.17 gi|557693977|ref|YP_008797031.1| - 0.038 14.1 0.0 0.069 13.3 0.0 1.5 1 0 0 1 1 1 0 RNA helicase KTI12 PF08433.5 gi|557693977|ref|YP_008797031.1| - 0.04 13.1 0.0 0.066 12.4 0.0 1.3 1 0 0 1 1 1 0 Chromatin associated protein KTI12 NTPase_1 PF03266.10 gi|557693977|ref|YP_008797031.1| - 0.042 13.5 0.0 0.18 11.4 0.0 2.0 2 0 0 2 2 2 0 NTPase eRF1_2 PF03464.10 gi|557693977|ref|YP_008797031.1| - 0.047 14.0 0.0 1.1 9.6 0.0 2.3 2 0 0 2 2 2 0 eRF1 domain 2 NACHT PF05729.7 gi|557693977|ref|YP_008797031.1| - 0.048 13.3 0.0 0.087 12.4 0.0 1.4 1 0 0 1 1 1 0 NACHT domain AAA_29 PF13555.1 gi|557693977|ref|YP_008797031.1| - 0.055 13.0 0.0 0.15 11.6 0.0 1.7 1 0 0 1 1 1 0 P-loop containing region of AAA domain Rad17 PF03215.10 gi|557693977|ref|YP_008797031.1| - 0.068 11.8 0.0 0.12 10.9 0.0 1.3 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein Zeta_toxin PF06414.7 gi|557693977|ref|YP_008797031.1| - 0.075 12.1 0.0 0.26 10.3 0.0 1.8 2 0 0 2 2 2 0 Zeta toxin ArgK PF03308.11 gi|557693977|ref|YP_008797031.1| - 0.093 11.4 0.0 0.19 10.4 0.0 1.4 1 0 0 1 1 1 0 ArgK protein ABC_tran PF00005.22 gi|557693977|ref|YP_008797031.1| - 0.095 12.9 0.0 0.22 11.8 0.0 1.6 1 0 0 1 1 1 0 ABC transporter DUF815 PF05673.8 gi|557693977|ref|YP_008797031.1| - 0.12 11.3 0.0 0.23 10.3 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF815) AAA_30 PF13604.1 gi|557693977|ref|YP_008797031.1| - 0.13 11.8 0.0 0.31 10.5 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|557693977|ref|YP_008797031.1| - 0.13 11.6 0.0 0.19 11.1 0.0 1.3 1 0 0 1 1 1 0 AAA-like domain PTS_IIB PF02302.12 gi|557693977|ref|YP_008797031.1| - 0.16 12.4 0.0 31 5.1 0.0 2.9 3 0 0 3 3 2 0 PTS system, Lactose/Cellobiose specific IIB subunit Thymidylate_kin PF02223.12 gi|557693977|ref|YP_008797031.1| - 0.17 11.2 0.0 0.4 10.0 0.0 1.7 1 0 0 1 1 1 0 Thymidylate kinase PUA PF01472.15 gi|557693978|ref|YP_008797032.1| - 1.2e-17 63.3 0.2 2e-17 62.6 0.2 1.3 1 0 0 1 1 1 1 PUA domain ParA PF10609.4 gi|557693979|ref|YP_008797033.1| - 3.9e-34 116.3 0.1 1.8e-33 114.2 0.0 2.1 2 0 0 2 2 2 1 ParA/MinD ATPase like DUF59 PF01883.14 gi|557693979|ref|YP_008797033.1| - 4.8e-23 80.9 1.9 2.8e-22 78.4 0.1 2.5 2 0 0 2 2 2 1 Domain of unknown function DUF59 CbiA PF01656.18 gi|557693979|ref|YP_008797033.1| - 2e-21 76.2 0.2 3.3e-21 75.5 0.1 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|557693979|ref|YP_008797033.1| - 1.6e-09 37.8 0.0 2e-07 31.0 0.0 2.2 2 0 0 2 2 2 1 AAA domain MipZ PF09140.6 gi|557693979|ref|YP_008797033.1| - 1e-06 28.0 0.0 2.1e-06 26.9 0.0 1.6 1 1 0 1 1 1 1 ATPase MipZ Fer4_NifH PF00142.13 gi|557693979|ref|YP_008797033.1| - 3.1e-06 26.5 0.1 0.045 12.9 0.0 2.2 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family VirC1 PF07015.6 gi|557693979|ref|YP_008797033.1| - 7.3e-05 21.9 0.2 0.00012 21.2 0.1 1.2 1 0 0 1 1 1 1 VirC1 protein ArsA_ATPase PF02374.10 gi|557693979|ref|YP_008797033.1| - 7.3e-05 21.9 2.8 0.00023 20.3 1.1 2.1 2 0 0 2 2 2 1 Anion-transporting ATPase AAA_26 PF13500.1 gi|557693979|ref|YP_008797033.1| - 0.00056 19.5 0.3 0.032 13.8 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_25 PF13481.1 gi|557693979|ref|YP_008797033.1| - 0.0046 16.3 0.1 0.011 15.1 0.1 1.6 1 0 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|557693979|ref|YP_008797033.1| - 0.0046 16.6 6.7 0.24 11.1 0.5 3.4 3 0 0 3 3 3 1 Part of AAA domain SRP54 PF00448.17 gi|557693979|ref|YP_008797033.1| - 0.011 15.1 0.2 0.037 13.4 0.1 1.8 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain A2L_zn_ribbon PF08792.5 gi|557693979|ref|YP_008797033.1| - 0.016 14.6 0.2 0.028 13.8 0.1 1.3 1 0 0 1 1 1 0 A2L zinc ribbon domain PhoH PF02562.11 gi|557693979|ref|YP_008797033.1| - 0.081 12.1 0.4 1.8 7.7 0.1 2.1 2 0 0 2 2 2 0 PhoH-like protein AAA_10 PF12846.2 gi|557693979|ref|YP_008797033.1| - 0.15 11.4 0.1 0.31 10.4 0.1 1.5 2 0 0 2 2 2 0 AAA-like domain YhjQ PF06564.7 gi|557693979|ref|YP_008797033.1| - 0.22 10.8 1.4 0.97 8.7 0.5 1.9 2 0 0 2 2 2 0 YhjQ protein CBS PF00571.23 gi|557693980|ref|YP_008797034.1| - 3.1e-50 167.7 12.7 4e-17 61.7 0.5 4.2 4 0 0 4 4 4 4 CBS domain DUF3816 PF12822.2 gi|557693981|ref|YP_008797035.1| - 2.6e-05 24.1 24.5 6.4e-05 22.9 17.0 1.5 1 1 0 1 1 1 1 Protein of unknown function (DUF3816) Phage_holin_5 PF06946.6 gi|557693981|ref|YP_008797035.1| - 0.47 10.6 0.1 0.47 10.6 0.0 2.8 2 1 2 4 4 4 0 Phage holin ADH_zinc_N PF00107.21 gi|557693982|ref|YP_008797036.1| - 4e-27 94.3 1.5 4e-27 94.3 1.0 1.7 2 0 0 2 2 2 1 Zinc-binding dehydrogenase ADH_N PF08240.7 gi|557693982|ref|YP_008797036.1| - 3.1e-26 91.2 1.9 9.2e-26 89.7 1.3 1.8 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N_2 PF13602.1 gi|557693982|ref|YP_008797036.1| - 8.2e-07 29.9 0.1 2e-06 28.6 0.1 1.6 1 0 0 1 1 1 1 Zinc-binding dehydrogenase TrkA_N PF02254.13 gi|557693982|ref|YP_008797036.1| - 0.0014 18.6 0.4 0.0023 17.9 0.2 1.3 1 0 0 1 1 1 1 TrkA-N domain Methyltransf_18 PF12847.2 gi|557693982|ref|YP_008797036.1| - 0.0025 18.3 0.0 0.0047 17.4 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain AlaDh_PNT_C PF01262.16 gi|557693982|ref|YP_008797036.1| - 0.0087 15.6 0.3 0.02 14.4 0.2 1.6 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain 2-Hacid_dh_C PF02826.14 gi|557693982|ref|YP_008797036.1| - 0.034 13.3 0.3 0.068 12.3 0.0 1.5 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ADH_N_assoc PF13823.1 gi|557693982|ref|YP_008797036.1| - 0.041 13.5 0.3 0.1 12.2 0.2 1.7 1 0 0 1 1 1 0 Alcohol dehydrogenase GroES-associated TPP_enzyme_M PF00205.17 gi|557693982|ref|YP_008797036.1| - 0.11 12.2 0.0 0.21 11.3 0.0 1.4 1 0 0 1 1 1 0 Thiamine pyrophosphate enzyme, central domain Pyr_redox PF00070.22 gi|557693982|ref|YP_008797036.1| - 0.12 12.8 2.4 9.7 6.6 0.0 2.6 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Acylphosphatase PF00708.13 gi|557693983|ref|YP_008797037.1| - 2.7e-22 78.6 0.0 3.8e-22 78.1 0.0 1.3 1 0 0 1 1 1 1 Acylphosphatase Methyltrn_RNA_3 PF02598.12 gi|557693984|ref|YP_008797038.1| - 1.4e-46 159.2 0.0 1.5e-46 159.0 0.0 1.0 1 0 0 1 1 1 1 Putative RNA methyltransferase DUF1093 PF06486.6 gi|557693984|ref|YP_008797038.1| - 0.033 14.5 0.1 0.079 13.3 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF1093) SpoU_methylase PF00588.14 gi|557693984|ref|YP_008797038.1| - 0.065 13.1 0.0 0.65 9.8 0.0 2.2 2 0 0 2 2 2 0 SpoU rRNA Methylase family Archease PF01951.11 gi|557693985|ref|YP_008797039.1| - 6.7e-33 113.5 0.4 7.4e-33 113.3 0.3 1.0 1 0 0 1 1 1 1 Archease protein family (MTH1598/TM1083) Ets PF00178.17 gi|557693985|ref|YP_008797039.1| - 0.11 12.5 0.2 0.17 12.0 0.1 1.2 1 0 0 1 1 1 0 Ets-domain HEPN PF05168.9 gi|557693986|ref|YP_008797040.1| - 1.3e-19 70.2 1.5 1.5e-19 69.9 1.0 1.1 1 0 0 1 1 1 1 HEPN domain Cytochrom_D1 PF02239.11 gi|557693986|ref|YP_008797040.1| - 0.065 11.5 0.0 0.083 11.1 0.0 1.1 1 0 0 1 1 1 0 Cytochrome D1 heme domain NTP_transf_2 PF01909.18 gi|557693987|ref|YP_008797041.1| - 3.5e-10 40.0 0.1 4.5e-10 39.7 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyltransferase domain CarboxypepD_reg PF13620.1 gi|557693989|ref|YP_008797043.1| - 7.2e-12 45.1 21.6 9.7e-07 28.7 0.9 6.6 7 0 0 7 7 7 3 Carboxypeptidase regulatory-like domain DUF824 PF05688.6 gi|557693989|ref|YP_008797043.1| - 0.0017 17.9 3.1 22 4.7 0.0 5.7 5 0 0 5 5 5 1 Salmonella repeat of unknown function (DUF824) Big_1 PF02369.11 gi|557693989|ref|YP_008797043.1| - 0.014 15.3 10.3 2.1 8.3 0.2 6.1 4 1 0 5 5 5 0 Bacterial Ig-like domain (group 1) IGPD PF00475.13 gi|557693989|ref|YP_008797043.1| - 0.62 9.9 0.0 1.3 8.8 0.0 1.4 1 0 0 1 1 1 0 Imidazoleglycerol-phosphate dehydratase PIN PF01850.16 gi|557693990|ref|YP_008797044.1| - 4.4e-12 46.4 0.1 5e-12 46.2 0.1 1.0 1 0 0 1 1 1 1 PIN domain RHH_3 PF12651.2 gi|557693991|ref|YP_008797045.1| - 0.024 14.3 0.1 0.098 12.4 0.0 1.9 1 1 1 2 2 2 0 Ribbon-helix-helix domain CcdA PF07362.7 gi|557693991|ref|YP_008797045.1| - 0.068 13.0 0.5 0.1 12.4 0.4 1.5 1 1 0 1 1 1 0 Post-segregation antitoxin CcdA DUF217 PF02697.9 gi|557693992|ref|YP_008797046.1| - 3.1e-18 65.7 0.3 3.5e-18 65.6 0.2 1.0 1 0 0 1 1 1 1 Uncharacterized ACR, COG1753 PIN PF01850.16 gi|557693993|ref|YP_008797047.1| - 3.8e-16 59.4 0.3 4.2e-16 59.3 0.2 1.0 1 0 0 1 1 1 1 PIN domain DUF2084 PF09857.4 gi|557693993|ref|YP_008797047.1| - 0.12 12.0 0.0 0.24 11.1 0.0 1.5 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2084) N6_N4_Mtase PF01555.13 gi|557693995|ref|YP_008797049.1| - 3.1e-16 59.5 0.0 6.7e-07 29.0 0.0 2.6 3 0 0 3 3 3 2 DNA methylase Methyltransf_26 PF13659.1 gi|557693995|ref|YP_008797049.1| - 3.7e-13 49.5 0.9 1.3e-12 47.8 0.7 2.1 1 1 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.13 gi|557693995|ref|YP_008797049.1| - 1.5e-08 34.4 0.0 0.00014 21.5 0.0 2.6 2 1 1 3 3 3 2 Putative RNA methylase family UPF0020 Methyltransf_11 PF08241.7 gi|557693995|ref|YP_008797049.1| - 2e-05 25.0 0.1 0.12 12.9 0.0 3.0 3 0 0 3 3 3 2 Methyltransferase domain Methyltransf_23 PF13489.1 gi|557693995|ref|YP_008797049.1| - 0.063 13.0 0.0 0.37 10.4 0.0 2.1 2 0 0 2 2 2 0 Methyltransferase domain Methyltransf_8 PF05148.10 gi|557693995|ref|YP_008797049.1| - 0.14 11.8 0.1 16 5.0 0.0 2.5 3 0 0 3 3 3 0 Hypothetical methyltransferase Methyltransf_31 PF13847.1 gi|557693995|ref|YP_008797049.1| - 0.16 11.5 0.0 0.5 9.9 0.0 1.8 2 0 0 2 2 2 0 Methyltransferase domain MethyltransfD12 PF02086.10 gi|557693995|ref|YP_008797049.1| - 0.19 11.1 0.0 0.31 10.4 0.0 1.3 1 0 0 1 1 1 0 D12 class N6 adenine-specific DNA methyltransferase Pribosyltran PF00156.22 gi|557693996|ref|YP_008797050.1| - 1.9e-13 50.2 0.3 2.6e-13 49.8 0.2 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase domain Vps16_N PF04841.8 gi|557693996|ref|YP_008797050.1| - 0.13 10.7 0.0 0.14 10.6 0.0 1.1 1 0 0 1 1 1 0 Vps16, N-terminal region Ribonuclease_P PF00825.13 gi|557693997|ref|YP_008797051.1| - 0.015 15.2 0.8 0.016 15.1 0.5 1.2 1 0 0 1 1 1 0 Ribonuclease P PfkB PF00294.19 gi|557693999|ref|YP_008797053.1| - 4e-52 177.2 0.0 4.6e-52 177.0 0.0 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase DHDPS PF00701.17 gi|557694000|ref|YP_008797054.1| - 1.5e-53 181.3 0.0 1.7e-53 181.1 0.0 1.0 1 0 0 1 1 1 1 Dihydrodipicolinate synthetase family adh_short PF00106.20 gi|557694001|ref|YP_008797055.1| - 2e-31 109.1 0.1 2.7e-31 108.7 0.1 1.1 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|557694001|ref|YP_008797055.1| - 3.2e-19 69.6 0.0 3.8e-19 69.4 0.0 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.5 gi|557694001|ref|YP_008797055.1| - 4.2e-12 46.0 0.1 5.3e-12 45.7 0.0 1.1 1 0 0 1 1 1 1 KR domain Epimerase PF01370.16 gi|557694001|ref|YP_008797055.1| - 0.0045 16.4 0.9 0.029 13.8 0.6 2.0 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family HlyC PF02794.11 gi|557694001|ref|YP_008797055.1| - 0.073 12.6 0.0 0.13 11.8 0.0 1.3 1 0 0 1 1 1 0 RTX toxin acyltransferase family Peptidase_M20 PF01546.23 gi|557694002|ref|YP_008797056.1| - 2.3e-14 53.3 0.0 3.4e-14 52.8 0.0 1.2 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.9 gi|557694002|ref|YP_008797056.1| - 6.7e-11 41.9 0.0 1.2e-10 41.1 0.0 1.4 1 0 0 1 1 1 1 Peptidase dimerisation domain DUF2092 PF09865.4 gi|557694002|ref|YP_008797056.1| - 0.068 12.2 0.0 0.12 11.3 0.0 1.3 1 0 0 1 1 1 0 Predicted periplasmic protein (DUF2092) Ald_Xan_dh_C2 PF02738.13 gi|557694003|ref|YP_008797057.1| - 1.9e-147 491.8 0.0 2.5e-147 491.5 0.0 1.0 1 0 0 1 1 1 1 Molybdopterin-binding domain of aldehyde dehydrogenase Ald_Xan_dh_C PF01315.17 gi|557694003|ref|YP_008797057.1| - 4.9e-21 74.8 0.0 8.9e-21 74.0 0.0 1.5 1 0 0 1 1 1 1 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain BON PF04972.12 gi|557694003|ref|YP_008797057.1| - 0.089 12.5 0.0 0.82 9.4 0.0 2.4 2 0 0 2 2 2 0 BON domain PyrI PF01948.13 gi|557694004|ref|YP_008797058.1| - 4e-26 90.8 0.8 7.9e-26 89.9 0.1 1.8 2 0 0 2 2 2 1 Aspartate carbamoyltransferase regulatory chain, allosteric domain Pribosyltran PF00156.22 gi|557694004|ref|YP_008797058.1| - 4.2e-11 42.6 0.0 7.9e-11 41.7 0.0 1.4 1 0 0 1 1 1 1 Phosphoribosyl transferase domain PRTase_2 PF15609.1 gi|557694004|ref|YP_008797058.1| - 1.5e-05 24.4 0.1 2.4e-05 23.7 0.1 1.3 1 0 0 1 1 1 1 Phosphoribosyl transferase PyrI_C PF02748.10 gi|557694004|ref|YP_008797058.1| - 0.001 18.4 0.8 0.0019 17.5 0.5 1.5 1 0 0 1 1 1 1 Aspartate carbamoyltransferase regulatory chain, metal binding domain UPRTase PF14681.1 gi|557694004|ref|YP_008797058.1| - 0.08 12.1 0.1 0.13 11.4 0.1 1.3 1 0 0 1 1 1 0 Uracil phosphoribosyltransferase OMPdecase PF00215.19 gi|557694005|ref|YP_008797059.1| - 2.9e-24 85.7 0.0 3.5e-24 85.4 0.0 1.1 1 0 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family Aldedh PF00171.17 gi|557694006|ref|YP_008797060.1| - 7.2e-139 463.0 0.0 9.7e-139 462.6 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family SPW PF03779.9 gi|557694006|ref|YP_008797060.1| - 0.061 12.7 1.0 0.13 11.6 0.7 1.5 1 0 0 1 1 1 0 SPW repeat LuxC PF05893.9 gi|557694006|ref|YP_008797060.1| - 0.1 11.3 0.0 0.27 9.9 0.0 1.6 1 1 0 1 1 1 0 Acyl-CoA reductase (LuxC) Bac_luciferase PF00296.15 gi|557694007|ref|YP_008797061.1| - 5.1e-55 186.7 0.0 6.3e-55 186.4 0.0 1.0 1 0 0 1 1 1 1 Luciferase-like monooxygenase Rsbr_N PF08678.5 gi|557694007|ref|YP_008797061.1| - 0.046 13.6 0.0 0.1 12.4 0.0 1.5 1 0 0 1 1 1 0 Rsbr N terminal Peripla_BP_6 PF13458.1 gi|557694008|ref|YP_008797062.1| - 1.4e-62 212.0 0.0 1.6e-62 211.8 0.0 1.1 1 0 0 1 1 1 1 Periplasmic binding protein ANF_receptor PF01094.23 gi|557694008|ref|YP_008797062.1| - 2e-22 79.4 0.1 4.1e-22 78.4 0.0 1.4 1 1 0 1 1 1 1 Receptor family ligand binding region Peripla_BP_5 PF13433.1 gi|557694008|ref|YP_008797062.1| - 8.8e-22 77.3 0.0 1.3e-21 76.7 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding protein domain TroA PF01297.12 gi|557694008|ref|YP_008797062.1| - 0.073 12.2 0.2 0.25 10.5 0.1 1.8 1 1 0 1 1 1 0 Periplasmic solute binding protein family Dynamin_M PF01031.15 gi|557694008|ref|YP_008797062.1| - 0.13 10.9 0.0 0.19 10.4 0.0 1.2 1 0 0 1 1 1 0 Dynamin central region BPD_transp_2 PF02653.11 gi|557694009|ref|YP_008797063.1| - 3e-32 111.6 44.8 3.5e-32 111.4 31.1 1.0 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component BPD_transp_2 PF02653.11 gi|557694010|ref|YP_008797064.1| - 8.6e-36 123.2 32.3 1.2e-35 122.8 22.4 1.2 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component Pam17 PF08566.5 gi|557694010|ref|YP_008797064.1| - 1 9.0 6.6 9.6 5.8 1.2 2.4 2 1 0 2 2 2 0 Mitochondrial import protein Pam17 ABC_tran PF00005.22 gi|557694011|ref|YP_008797065.1| - 5.6e-34 117.3 0.0 7.1e-34 117.0 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|557694011|ref|YP_008797065.1| - 1.3e-13 51.5 0.0 2.2e-12 47.5 0.0 2.0 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|557694011|ref|YP_008797065.1| - 3.7e-05 23.1 0.1 7.1e-05 22.2 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_10 PF12846.2 gi|557694011|ref|YP_008797065.1| - 0.00063 19.2 0.3 0.041 13.3 0.1 2.1 2 0 0 2 2 2 1 AAA-like domain SMC_N PF02463.14 gi|557694011|ref|YP_008797065.1| - 0.00066 18.9 0.0 0.0026 17.0 0.0 1.9 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.1 gi|557694011|ref|YP_008797065.1| - 0.0011 18.1 0.0 0.35 9.8 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_23 PF13476.1 gi|557694011|ref|YP_008797065.1| - 0.0017 18.7 0.0 0.0027 18.0 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|557694011|ref|YP_008797065.1| - 0.0022 18.1 0.2 0.0072 16.4 0.1 2.0 1 1 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|557694011|ref|YP_008797065.1| - 0.0023 17.1 0.0 0.0037 16.4 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_14 PF13173.1 gi|557694011|ref|YP_008797065.1| - 0.0023 17.8 0.1 0.027 14.3 0.0 2.2 2 0 0 2 2 2 1 AAA domain MMR_HSR1 PF01926.18 gi|557694011|ref|YP_008797065.1| - 0.0058 16.5 0.3 0.027 14.4 0.2 1.9 1 1 0 1 1 1 1 50S ribosome-binding GTPase AAA_16 PF13191.1 gi|557694011|ref|YP_008797065.1| - 0.0064 16.4 0.0 0.0081 16.1 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_25 PF13481.1 gi|557694011|ref|YP_008797065.1| - 0.014 14.7 0.1 0.035 13.4 0.1 1.8 1 1 0 1 1 1 0 AAA domain Mg_chelatase PF01078.16 gi|557694011|ref|YP_008797065.1| - 0.022 13.9 0.0 0.034 13.3 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_17 PF13207.1 gi|557694011|ref|YP_008797065.1| - 0.025 15.3 0.5 0.056 14.2 0.2 2.0 2 1 0 2 2 1 0 AAA domain AAA_30 PF13604.1 gi|557694011|ref|YP_008797065.1| - 0.034 13.7 0.0 0.047 13.2 0.0 1.4 1 1 0 1 1 1 0 AAA domain Guanylate_kin PF00625.16 gi|557694011|ref|YP_008797065.1| - 0.034 13.5 0.0 0.054 12.9 0.0 1.3 1 0 0 1 1 1 0 Guanylate kinase AAA_33 PF13671.1 gi|557694011|ref|YP_008797065.1| - 0.036 13.9 0.1 0.082 12.7 0.1 1.7 2 1 0 2 2 2 0 AAA domain MobB PF03205.9 gi|557694011|ref|YP_008797065.1| - 0.039 13.6 0.1 0.085 12.5 0.0 1.6 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B ABC_ATPase PF09818.4 gi|557694011|ref|YP_008797065.1| - 0.041 12.4 0.0 0.43 9.0 0.1 2.1 2 0 0 2 2 2 0 Predicted ATPase of the ABC class PIF1 PF05970.9 gi|557694011|ref|YP_008797065.1| - 0.048 12.6 0.0 0.063 12.2 0.0 1.2 1 0 0 1 1 1 0 PIF1-like helicase NACHT PF05729.7 gi|557694011|ref|YP_008797065.1| - 0.057 13.0 0.1 0.23 11.1 0.1 2.0 1 1 1 2 2 2 0 NACHT domain SbcCD_C PF13558.1 gi|557694011|ref|YP_008797065.1| - 0.081 12.8 0.0 0.99 9.3 0.0 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit Miro PF08477.8 gi|557694011|ref|YP_008797065.1| - 0.083 13.3 0.0 0.14 12.6 0.0 1.4 1 0 0 1 1 1 0 Miro-like protein Dynamin_N PF00350.18 gi|557694011|ref|YP_008797065.1| - 0.092 12.5 0.1 0.18 11.6 0.1 1.7 1 1 0 1 1 1 0 Dynamin family cobW PF02492.14 gi|557694011|ref|YP_008797065.1| - 0.096 12.1 0.2 0.74 9.2 0.1 2.0 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain Arch_ATPase PF01637.13 gi|557694011|ref|YP_008797065.1| - 0.098 12.3 0.1 0.23 11.1 0.0 1.6 1 1 0 1 1 1 0 Archaeal ATPase T2SE PF00437.15 gi|557694011|ref|YP_008797065.1| - 0.11 11.3 0.0 0.17 10.7 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_24 PF13479.1 gi|557694011|ref|YP_008797065.1| - 0.15 11.6 0.8 0.41 10.2 0.1 1.9 2 0 0 2 2 2 0 AAA domain ABC_tran PF00005.22 gi|557694012|ref|YP_008797066.1| - 1e-29 103.5 0.0 1.7e-29 102.8 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|557694012|ref|YP_008797066.1| - 3.6e-12 46.8 0.5 8.9e-06 25.8 0.0 2.1 1 1 1 2 2 2 2 AAA domain BCA_ABC_TP_C PF12399.3 gi|557694012|ref|YP_008797066.1| - 1.1e-05 24.9 0.0 2.9e-05 23.6 0.0 1.8 1 0 0 1 1 1 1 Branched-chain amino acid ATP-binding cassette transporter AAA_29 PF13555.1 gi|557694012|ref|YP_008797066.1| - 0.00029 20.3 0.0 0.0034 16.8 0.0 2.2 2 0 0 2 2 2 1 P-loop containing region of AAA domain SMC_N PF02463.14 gi|557694012|ref|YP_008797066.1| - 0.0011 18.1 0.2 0.11 11.7 0.1 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain Arch_ATPase PF01637.13 gi|557694012|ref|YP_008797066.1| - 0.0047 16.6 0.1 0.011 15.4 0.0 1.8 1 1 0 1 1 1 1 Archaeal ATPase AAA_23 PF13476.1 gi|557694012|ref|YP_008797066.1| - 0.007 16.7 0.0 0.0086 16.4 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|557694012|ref|YP_008797066.1| - 0.011 16.5 0.1 0.015 16.0 0.0 1.5 1 1 0 1 1 1 0 AAA domain AAA PF00004.24 gi|557694012|ref|YP_008797066.1| - 0.012 15.8 0.0 0.052 13.7 0.0 2.2 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_19 PF13245.1 gi|557694012|ref|YP_008797066.1| - 0.022 14.5 0.0 0.26 11.0 0.0 2.3 2 0 0 2 2 2 0 Part of AAA domain DUF258 PF03193.11 gi|557694012|ref|YP_008797066.1| - 0.042 13.0 0.0 0.09 11.9 0.0 1.5 2 0 0 2 2 2 0 Protein of unknown function, DUF258 SbcCD_C PF13558.1 gi|557694012|ref|YP_008797066.1| - 0.045 13.6 0.1 0.44 10.4 0.0 2.3 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_25 PF13481.1 gi|557694012|ref|YP_008797066.1| - 0.084 12.2 0.2 0.23 10.8 0.0 1.9 2 1 0 2 2 2 0 AAA domain AAA_33 PF13671.1 gi|557694012|ref|YP_008797066.1| - 0.088 12.6 0.0 0.12 12.2 0.0 1.7 1 1 0 1 1 1 0 AAA domain UPF0079 PF02367.12 gi|557694012|ref|YP_008797066.1| - 0.1 12.2 0.0 0.18 11.4 0.0 1.3 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 cobW PF02492.14 gi|557694012|ref|YP_008797066.1| - 0.11 11.9 0.2 0.57 9.6 0.1 2.0 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain AAA_10 PF12846.2 gi|557694012|ref|YP_008797066.1| - 0.12 11.7 0.1 6.7 6.0 0.0 2.1 2 0 0 2 2 2 0 AAA-like domain HEPN PF05168.9 gi|557694013|ref|YP_008797067.1| - 3.5e-20 72.0 0.4 3.9e-20 71.8 0.3 1.0 1 0 0 1 1 1 1 HEPN domain DUF2786 PF10979.3 gi|557694013|ref|YP_008797067.1| - 0.07 12.8 2.1 0.15 11.7 0.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2786) NTP_transf_2 PF01909.18 gi|557694014|ref|YP_008797068.1| - 1.8e-12 47.4 0.2 2.3e-12 47.0 0.2 1.3 1 0 0 1 1 1 1 Nucleotidyltransferase domain DNA_pol_B_palm PF14792.1 gi|557694014|ref|YP_008797068.1| - 1.5e-05 25.0 0.0 1.8e-05 24.7 0.0 1.1 1 0 0 1 1 1 1 DNA polymerase beta palm PRA-PH PF01503.12 gi|557694015|ref|YP_008797069.1| - 3.4 8.0 4.9 8.7 6.7 3.4 1.7 1 1 0 1 1 1 0 Phosphoribosyl-ATP pyrophosphohydrolase Plasmid_stabil PF05016.9 gi|557694016|ref|YP_008797070.1| - 3.5e-06 27.3 2.7 4.6e-06 26.9 1.9 1.2 1 0 0 1 1 1 1 Plasmid stabilisation system protein TcdB_N PF12918.2 gi|557694016|ref|YP_008797070.1| - 0.097 12.7 0.1 4.8 7.3 0.0 2.2 2 0 0 2 2 2 0 TcdB toxin N-terminal helical domain Phage_BR0599 PF09356.5 gi|557694016|ref|YP_008797070.1| - 0.13 12.4 0.0 0.18 11.9 0.0 1.2 1 0 0 1 1 1 0 Phage conserved hypothetical protein BR0599 DUF211 PF02680.9 gi|557694017|ref|YP_008797071.1| - 7.4e-29 99.4 0.4 9.4e-29 99.0 0.3 1.0 1 0 0 1 1 1 1 Uncharacterized ArCR, COG1888 HMA PF00403.21 gi|557694017|ref|YP_008797071.1| - 0.033 14.3 1.2 0.22 11.7 0.8 2.1 1 1 0 1 1 1 0 Heavy-metal-associated domain RVT_3 PF13456.1 gi|557694017|ref|YP_008797071.1| - 0.089 12.5 0.0 0.12 12.2 0.0 1.1 1 0 0 1 1 1 0 Reverse transcriptase-like Amino_oxidase PF01593.19 gi|557694018|ref|YP_008797072.1| - 2e-25 89.8 0.0 3.1e-25 89.1 0.0 1.3 1 1 0 1 1 1 1 Flavin containing amine oxidoreductase NAD_binding_8 PF13450.1 gi|557694018|ref|YP_008797072.1| - 3.4e-14 52.6 1.0 6.8e-14 51.6 0.1 1.9 2 0 0 2 2 1 1 NAD(P)-binding Rossmann-like domain DAO PF01266.19 gi|557694018|ref|YP_008797072.1| - 2.5e-11 43.1 0.0 1e-06 27.9 0.0 2.4 3 0 0 3 3 3 2 FAD dependent oxidoreductase FAD_oxidored PF12831.2 gi|557694018|ref|YP_008797072.1| - 9.3e-08 31.5 0.1 4.4e-06 26.0 0.0 2.1 2 0 0 2 2 2 1 FAD dependent oxidoreductase HI0933_like PF03486.9 gi|557694018|ref|YP_008797072.1| - 1.5e-06 26.9 5.4 0.002 16.7 1.9 2.2 2 0 0 2 2 2 2 HI0933-like protein Pyr_redox_2 PF07992.9 gi|557694018|ref|YP_008797072.1| - 1.7e-06 28.0 1.9 5.4e-05 23.1 0.7 2.3 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.19 gi|557694018|ref|YP_008797072.1| - 3.6e-06 26.0 6.7 9.6e-06 24.6 2.6 2.1 2 0 0 2 2 2 1 FAD binding domain Pyr_redox PF00070.22 gi|557694018|ref|YP_008797072.1| - 6.3e-06 26.5 6.5 0.0018 18.6 2.4 2.7 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.12 gi|557694018|ref|YP_008797072.1| - 0.00015 20.9 0.3 0.00028 20.0 0.2 1.3 1 0 0 1 1 1 1 Thi4 family AlaDh_PNT_C PF01262.16 gi|557694018|ref|YP_008797072.1| - 0.00069 19.2 0.6 0.0014 18.2 0.4 1.5 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain Pyr_redox_3 PF13738.1 gi|557694018|ref|YP_008797072.1| - 0.0011 19.0 3.1 0.014 15.4 1.1 2.3 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.14 gi|557694018|ref|YP_008797072.1| - 0.0014 17.7 1.7 0.0021 17.1 1.2 1.2 1 0 0 1 1 1 1 FAD binding domain 3HCDH_N PF02737.13 gi|557694018|ref|YP_008797072.1| - 0.0057 16.3 1.4 0.011 15.3 1.0 1.5 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain UDPG_MGDP_dh_N PF03721.9 gi|557694018|ref|YP_008797072.1| - 0.0063 15.9 0.2 0.014 14.7 0.1 1.5 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NAD_Gly3P_dh_N PF01210.18 gi|557694018|ref|YP_008797072.1| - 0.016 14.9 0.9 0.034 13.8 0.6 1.5 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus FMO-like PF00743.14 gi|557694018|ref|YP_008797072.1| - 0.047 11.8 0.1 0.085 11.0 0.1 1.3 1 0 0 1 1 1 0 Flavin-binding monooxygenase-like GIDA PF01134.17 gi|557694018|ref|YP_008797072.1| - 0.055 12.3 7.6 0.054 12.3 3.2 2.3 3 0 0 3 3 3 0 Glucose inhibited division protein A NAD_binding_9 PF13454.1 gi|557694018|ref|YP_008797072.1| - 0.079 12.7 1.4 0.56 9.9 0.3 2.6 3 0 0 3 3 3 0 FAD-NAD(P)-binding NAD_binding_10 PF13460.1 gi|557694018|ref|YP_008797072.1| - 0.16 11.9 0.0 0.29 11.1 0.0 1.4 1 0 0 1 1 1 0 NADH(P)-binding ApbA PF02558.11 gi|557694018|ref|YP_008797072.1| - 0.21 11.0 1.3 0.43 9.9 0.9 1.5 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA Trp_halogenase PF04820.9 gi|557694018|ref|YP_008797072.1| - 0.23 10.0 2.0 0.37 9.3 1.4 1.3 1 0 0 1 1 1 0 Tryptophan halogenase SQS_PSY PF00494.14 gi|557694019|ref|YP_008797073.1| - 3.1e-41 141.4 0.1 3.8e-41 141.1 0.1 1.0 1 0 0 1 1 1 1 Squalene/phytoene synthase UbiA PF01040.13 gi|557694020|ref|YP_008797074.1| - 1.5e-25 89.8 23.5 1.9e-25 89.5 16.3 1.1 1 0 0 1 1 1 1 UbiA prenyltransferase family Adenosine_kin PF04008.9 gi|557694022|ref|YP_008797076.1| - 2.4e-71 238.2 0.1 2.7e-71 238.0 0.0 1.0 1 0 0 1 1 1 1 Adenosine specific kinase polyprenyl_synt PF00348.12 gi|557694023|ref|YP_008797077.1| - 1.8e-52 177.7 0.0 2.4e-52 177.3 0.0 1.1 1 0 0 1 1 1 1 Polyprenyl synthetase Nitroreductase PF00881.19 gi|557694024|ref|YP_008797078.1| - 6.8e-12 45.5 0.1 2.3e-11 43.7 0.1 1.9 1 1 0 1 1 1 1 Nitroreductase family Tubulin PF00091.20 gi|557694025|ref|YP_008797079.1| - 8.8e-35 120.4 0.5 1e-33 117.0 0.4 2.1 1 1 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain FtsZ_C PF12327.3 gi|557694025|ref|YP_008797079.1| - 2e-24 85.4 0.2 7.8e-24 83.5 0.0 2.1 2 0 0 2 2 2 1 FtsZ family, C-terminal domain DHC_N1 PF08385.7 gi|557694025|ref|YP_008797079.1| - 0.14 10.5 0.0 0.21 9.9 0.0 1.1 1 0 0 1 1 1 0 Dynein heavy chain, N-terminal region 1 RHH_1 PF01402.16 gi|557694026|ref|YP_008797080.1| - 2.1e-07 30.5 0.0 3e-07 30.0 0.0 1.3 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family Toprim_4 PF13662.1 gi|557694027|ref|YP_008797081.1| - 7.8e-05 22.6 0.0 0.00034 20.5 0.0 1.9 1 1 0 1 1 1 1 Toprim domain Toprim PF01751.17 gi|557694027|ref|YP_008797081.1| - 0.00034 20.5 0.0 0.0025 17.7 0.0 1.9 1 1 0 1 1 1 1 Toprim domain Toprim_2 PF13155.1 gi|557694027|ref|YP_008797081.1| - 0.026 14.8 0.0 0.036 14.3 0.0 1.4 1 1 0 1 1 1 0 Toprim-like HHH_5 PF14520.1 gi|557694027|ref|YP_008797081.1| - 0.28 11.3 1.4 2.7 8.2 0.0 2.4 3 1 0 3 3 3 0 Helix-hairpin-helix domain GXGXG PF01493.14 gi|557694028|ref|YP_008797082.1| - 4e-29 101.0 9.2 9.6e-29 99.8 6.4 1.6 1 1 0 1 1 1 1 GXGXG motif GATase_6 PF13522.1 gi|557694028|ref|YP_008797082.1| - 8.9e-16 58.0 0.0 2.7e-15 56.5 0.0 1.9 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_2 PF00310.16 gi|557694028|ref|YP_008797082.1| - 2.4e-15 56.1 0.0 7.6e-14 51.1 0.0 2.1 2 0 0 2 2 2 1 Glutamine amidotransferases class-II GATase_7 PF13537.1 gi|557694028|ref|YP_008797082.1| - 3.1e-06 26.9 0.0 9.7e-06 25.3 0.0 1.8 1 1 0 1 1 1 1 Glutamine amidotransferase domain GATase_4 PF13230.1 gi|557694028|ref|YP_008797082.1| - 1.9e-05 23.5 0.0 3.9e-05 22.4 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferases class-II Glu_synthase PF01645.12 gi|557694029|ref|YP_008797083.1| - 0.00054 18.9 0.1 0.006 15.5 0.1 2.3 2 1 1 3 3 3 1 Conserved region in glutamate synthase Glu_syn_central PF04898.9 gi|557694029|ref|YP_008797083.1| - 0.0028 16.9 0.0 0.16 11.2 0.0 2.2 2 0 0 2 2 2 2 Glutamate synthase central domain FMN_dh PF01070.13 gi|557694029|ref|YP_008797083.1| - 0.031 13.1 0.3 0.047 12.5 0.2 1.3 1 0 0 1 1 1 0 FMN-dependent dehydrogenase TauE PF01925.14 gi|557694030|ref|YP_008797084.1| - 4.9e-36 124.3 41.1 6e-36 124.1 28.5 1.0 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE DUF1634 PF07843.6 gi|557694031|ref|YP_008797085.1| - 3.4e-14 52.3 5.1 3.8e-14 52.1 3.6 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1634) Sensor PF13796.1 gi|557694031|ref|YP_008797085.1| - 0.29 10.7 6.5 0.13 11.8 3.1 1.5 1 1 0 1 1 1 0 Putative sensor DUF1980 PF09323.5 gi|557694031|ref|YP_008797085.1| - 0.93 9.1 3.8 1.3 8.7 2.6 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1980) Rieske PF00355.21 gi|557694032|ref|YP_008797086.1| - 8.1e-12 44.5 0.2 1.9e-11 43.3 0.1 1.6 1 1 0 1 1 1 1 Rieske [2Fe-2S] domain TAT_signal PF10518.4 gi|557694032|ref|YP_008797086.1| - 0.08 12.9 0.8 0.18 11.9 0.6 1.6 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence N6_N4_Mtase PF01555.13 gi|557694034|ref|YP_008797088.1| - 3.4e-26 92.1 0.1 1e-12 48.0 0.0 2.1 2 0 0 2 2 2 2 DNA methylase Methyltransf_26 PF13659.1 gi|557694034|ref|YP_008797088.1| - 3.2e-14 52.9 0.0 4.9e-14 52.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.13 gi|557694034|ref|YP_008797088.1| - 6.1e-09 35.6 0.0 1.2e-08 34.7 0.0 1.5 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_11 PF08241.7 gi|557694034|ref|YP_008797088.1| - 0.00029 21.2 0.0 0.73 10.3 0.0 2.5 3 0 0 3 3 3 2 Methyltransferase domain Thioredoxin_3 PF13192.1 gi|557694035|ref|YP_008797089.1| - 1.6e-09 37.3 0.5 2.9e-09 36.5 0.4 1.5 1 1 0 1 1 1 1 Thioredoxin domain Glutaredoxin PF00462.19 gi|557694035|ref|YP_008797089.1| - 2e-06 27.6 0.0 2.8e-06 27.2 0.0 1.2 1 0 0 1 1 1 1 Glutaredoxin Thioredoxin_4 PF13462.1 gi|557694035|ref|YP_008797089.1| - 0.0012 18.8 0.3 0.011 15.7 0.0 2.1 1 1 1 2 2 2 1 Thioredoxin GST_N_3 PF13417.1 gi|557694035|ref|YP_008797089.1| - 0.0047 17.1 0.0 0.0064 16.6 0.0 1.2 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain Thioredoxin PF00085.15 gi|557694035|ref|YP_008797089.1| - 0.0056 16.3 0.4 0.42 10.3 0.1 2.2 1 1 1 2 2 2 1 Thioredoxin Thioredoxin_2 PF13098.1 gi|557694035|ref|YP_008797089.1| - 0.0091 16.1 1.5 0.46 10.7 1.1 2.6 1 1 1 2 2 2 1 Thioredoxin-like domain GST_N_2 PF13409.1 gi|557694035|ref|YP_008797089.1| - 0.035 14.0 0.0 0.045 13.7 0.0 1.2 1 0 0 1 1 1 0 Glutathione S-transferase, N-terminal domain TrbC_Ftype PF09673.5 gi|557694035|ref|YP_008797089.1| - 0.097 12.2 0.0 0.76 9.4 0.0 1.9 1 1 1 2 2 2 0 Type-F conjugative transfer system pilin assembly protein ArsC PF03960.10 gi|557694035|ref|YP_008797089.1| - 0.11 12.5 0.1 0.13 12.3 0.1 1.4 1 1 0 1 1 1 0 ArsC family SNARE_assoc PF09335.6 gi|557694036|ref|YP_008797090.1| - 2.1e-11 44.0 10.6 2.6e-09 37.3 5.9 3.0 2 1 0 2 2 2 1 SNARE associated Golgi protein DUF1230 PF06799.6 gi|557694036|ref|YP_008797090.1| - 0.29 11.0 2.3 0.39 10.5 1.0 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF1230) Oxidored_q2 PF00420.19 gi|557694036|ref|YP_008797090.1| - 3.8 7.1 7.6 0.79 9.3 2.7 1.8 2 0 0 2 2 2 0 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L DUF4147 PF13660.1 gi|557694037|ref|YP_008797091.1| - 3.2e-70 235.9 0.0 4.6e-70 235.4 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4147) MOFRL PF05161.8 gi|557694037|ref|YP_008797091.1| - 2.6e-38 130.4 0.1 5.1e-38 129.4 0.1 1.5 1 0 0 1 1 1 1 MOFRL family DS PF01916.12 gi|557694038|ref|YP_008797092.1| - 9.1e-61 205.5 0.0 1.2e-60 205.2 0.0 1.1 1 0 0 1 1 1 1 Deoxyhypusine synthase Lysine_decarbox PF03641.9 gi|557694039|ref|YP_008797093.1| - 1.5e-07 31.2 0.0 2.9e-07 30.3 0.0 1.5 1 0 0 1 1 1 1 Possible lysine decarboxylase DAGK_cat PF00781.19 gi|557694039|ref|YP_008797093.1| - 0.00032 20.1 0.0 0.12 11.7 0.1 2.3 2 0 0 2 2 2 2 Diacylglycerol kinase catalytic domain adh_short PF00106.20 gi|557694039|ref|YP_008797093.1| - 0.098 12.5 0.0 0.17 11.8 0.0 1.4 1 0 0 1 1 1 0 short chain dehydrogenase Topoisom_bac PF01131.15 gi|557694040|ref|YP_008797094.1| - 1.2e-85 287.7 0.0 1.7e-85 287.3 0.0 1.2 1 0 0 1 1 1 1 DNA topoisomerase Toprim PF01751.17 gi|557694040|ref|YP_008797094.1| - 3.6e-19 68.5 0.0 2e-18 66.1 0.0 2.3 2 0 0 2 2 2 1 Toprim domain DEAD PF00270.24 gi|557694040|ref|YP_008797094.1| - 1e-13 51.1 0.0 5.3e-13 48.8 0.0 2.1 1 1 1 2 2 2 1 DEAD/DEAH box helicase PhoH PF02562.11 gi|557694040|ref|YP_008797094.1| - 1.6e-05 24.2 0.0 3.2e-05 23.2 0.0 1.5 1 0 0 1 1 1 1 PhoH-like protein ResIII PF04851.10 gi|557694040|ref|YP_008797094.1| - 0.00013 21.9 0.1 0.00031 20.6 0.0 1.6 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit Helicase_C PF00271.26 gi|557694040|ref|YP_008797094.1| - 0.00018 21.2 0.0 0.58 10.0 0.0 3.7 3 0 0 3 3 3 1 Helicase conserved C-terminal domain zf-C4pol PF14260.1 gi|557694040|ref|YP_008797094.1| - 0.00052 19.9 0.4 0.45 10.5 0.1 2.5 2 0 0 2 2 2 2 C4-type zinc-finger of DNA polymerase delta AAA_19 PF13245.1 gi|557694040|ref|YP_008797094.1| - 0.002 17.8 0.1 0.054 13.2 0.0 2.7 2 0 0 2 2 2 1 Part of AAA domain DZR PF12773.2 gi|557694040|ref|YP_008797094.1| - 0.021 14.6 5.5 0.2 11.4 0.6 2.5 2 0 0 2 2 2 0 Double zinc ribbon DUF35_N PF12172.3 gi|557694040|ref|YP_008797094.1| - 0.026 14.4 4.7 0.073 13.0 0.7 2.6 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) AAA_25 PF13481.1 gi|557694040|ref|YP_008797094.1| - 0.029 13.7 0.0 0.08 12.3 0.0 1.7 1 0 0 1 1 1 0 AAA domain Toprim_4 PF13662.1 gi|557694040|ref|YP_008797094.1| - 0.033 14.1 0.1 0.51 10.3 0.0 2.9 3 0 0 3 3 2 0 Toprim domain SecA_DEAD PF07517.9 gi|557694040|ref|YP_008797094.1| - 0.07 12.4 0.0 0.2 10.8 0.0 1.8 1 0 0 1 1 1 0 SecA DEAD-like domain AAA_30 PF13604.1 gi|557694040|ref|YP_008797094.1| - 0.071 12.6 0.0 0.15 11.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain DUF1400 PF07176.6 gi|557694040|ref|YP_008797094.1| - 0.12 12.3 0.0 3.3 7.6 0.0 2.5 2 0 0 2 2 2 0 Alpha/beta hydrolase of unknown function (DUF1400) IstB_IS21 PF01695.12 gi|557694040|ref|YP_008797094.1| - 0.13 11.6 0.0 0.3 10.4 0.0 1.5 1 0 0 1 1 1 0 IstB-like ATP binding protein DUF1272 PF06906.6 gi|557694040|ref|YP_008797094.1| - 0.16 11.8 3.9 7.4 6.4 0.0 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF1272) zf-ribbon_3 PF13248.1 gi|557694040|ref|YP_008797094.1| - 0.38 10.0 11.1 0.47 9.7 1.7 2.4 2 0 0 2 2 2 0 zinc-ribbon domain zinc-ribbons_6 PF07191.7 gi|557694040|ref|YP_008797094.1| - 0.62 9.9 4.8 1.7 8.5 0.6 2.3 2 0 0 2 2 2 0 zinc-ribbons Prok-RING_1 PF14446.1 gi|557694040|ref|YP_008797094.1| - 1.2 8.9 7.9 1 9.1 1.2 2.4 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 Aconitase PF00330.15 gi|557694041|ref|YP_008797095.1| - 1.5e-160 534.6 0.0 1.7e-160 534.5 0.0 1.0 1 0 0 1 1 1 1 Aconitase family (aconitate hydratase) DUF521 PF04412.8 gi|557694041|ref|YP_008797095.1| - 0.00073 18.2 0.0 0.0014 17.2 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF521) ParBc PF02195.13 gi|557694042|ref|YP_008797096.1| - 1.3e-16 60.4 0.3 2.3e-16 59.6 0.2 1.4 1 0 0 1 1 1 1 ParB-like nuclease domain HTH_17 PF12728.2 gi|557694042|ref|YP_008797096.1| - 0.00027 21.1 0.0 0.00068 19.8 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.1 gi|557694042|ref|YP_008797096.1| - 0.0013 18.3 0.0 0.0041 16.7 0.0 1.9 1 0 0 1 1 1 1 Homeodomain-like domain HTH_Tnp_1 PF01527.15 gi|557694042|ref|YP_008797096.1| - 0.0015 18.4 0.1 0.0041 17.0 0.1 1.7 1 1 0 1 1 1 1 Transposase GPP34 PF05719.6 gi|557694042|ref|YP_008797096.1| - 0.0027 17.8 0.3 0.0083 16.2 0.1 1.9 1 1 1 2 2 2 1 Golgi phosphoprotein 3 (GPP34) HTH_29 PF13551.1 gi|557694042|ref|YP_008797096.1| - 0.0052 16.9 0.2 0.012 15.7 0.0 1.7 2 0 0 2 2 2 1 Winged helix-turn helix HTH_22 PF13309.1 gi|557694042|ref|YP_008797096.1| - 0.033 13.9 0.1 1.7 8.4 0.0 2.7 2 0 0 2 2 2 0 HTH domain Phage_AlpA PF05930.7 gi|557694042|ref|YP_008797096.1| - 0.06 13.0 0.0 0.12 12.1 0.0 1.5 1 0 0 1 1 1 0 Prophage CP4-57 regulatory protein (AlpA) ABC_tran PF00005.22 gi|557694044|ref|YP_008797098.1| - 1.1e-07 32.2 0.0 0.003 17.8 0.0 2.3 1 1 1 2 2 2 2 ABC transporter Acetyltransf_1 PF00583.19 gi|557694044|ref|YP_008797098.1| - 2.6e-06 27.3 0.3 3.2e-05 23.8 0.0 2.7 2 0 0 2 2 2 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|557694044|ref|YP_008797098.1| - 1.9e-05 24.7 0.0 6.3e-05 23.0 0.0 1.9 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain AAA_22 PF13401.1 gi|557694044|ref|YP_008797098.1| - 0.00014 22.0 0.0 0.00043 20.4 0.0 1.8 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|557694044|ref|YP_008797098.1| - 0.00054 20.0 0.1 0.0014 18.6 0.0 1.8 1 1 0 1 1 1 1 AAA ATPase domain Acetyltransf_CG PF14542.1 gi|557694044|ref|YP_008797098.1| - 0.00072 19.3 0.0 0.0017 18.2 0.0 1.6 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase DUF3798 PF12683.2 gi|557694044|ref|YP_008797098.1| - 0.004 16.2 0.0 0.0068 15.5 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF3798) Acetyltransf_9 PF13527.1 gi|557694044|ref|YP_008797098.1| - 0.0042 16.9 0.2 0.042 13.6 0.0 2.5 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain NACHT PF05729.7 gi|557694044|ref|YP_008797098.1| - 0.0095 15.6 0.0 0.022 14.4 0.0 1.6 1 0 0 1 1 1 1 NACHT domain UPF0079 PF02367.12 gi|557694044|ref|YP_008797098.1| - 0.015 14.8 0.0 0.038 13.6 0.0 1.6 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 PIF1 PF05970.9 gi|557694044|ref|YP_008797098.1| - 0.016 14.1 0.0 0.025 13.5 0.0 1.2 1 0 0 1 1 1 0 PIF1-like helicase AAA_18 PF13238.1 gi|557694044|ref|YP_008797098.1| - 0.029 14.6 0.0 0.058 13.6 0.0 1.6 1 0 0 1 1 1 0 AAA domain RNA_helicase PF00910.17 gi|557694044|ref|YP_008797098.1| - 0.062 13.4 0.0 0.21 11.8 0.0 1.8 2 0 0 2 2 2 0 RNA helicase AAA_10 PF12846.2 gi|557694044|ref|YP_008797098.1| - 0.064 12.6 0.6 2.5 7.4 0.0 2.2 1 1 1 2 2 2 0 AAA-like domain AAA PF00004.24 gi|557694044|ref|YP_008797098.1| - 0.085 13.0 0.0 0.25 11.5 0.0 1.8 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) DUF2075 PF09848.4 gi|557694044|ref|YP_008797098.1| - 0.17 10.8 0.0 0.26 10.2 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) Phage_portal PF04860.7 gi|557694047|ref|YP_008797101.1| - 1.4e-19 70.0 0.0 1.7e-19 69.7 0.0 1.1 1 0 0 1 1 1 1 Phage portal protein Peptidase_U35 PF04586.12 gi|557694049|ref|YP_008797103.1| - 1.2e-11 44.9 0.0 1.6e-11 44.5 0.0 1.1 1 0 0 1 1 1 1 Caudovirus prohead protease Peptidase_U35_2 PF14550.1 gi|557694049|ref|YP_008797103.1| - 0.039 13.5 0.1 0.19 11.3 0.0 2.2 1 1 1 2 2 2 0 Putative phage protease XkdF Phage_capsid PF05065.8 gi|557694050|ref|YP_008797104.1| - 1.8e-18 66.7 0.2 2.2e-18 66.4 0.1 1.0 1 0 0 1 1 1 1 Phage capsid family DUF2460 PF09343.5 gi|557694051|ref|YP_008797105.1| - 0.045 13.0 0.0 0.078 12.3 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical protein 2217 (DUF2460) Peptidase_S8 PF00082.17 gi|557694053|ref|YP_008797107.1| - 3.8e-23 82.0 0.5 1.9e-22 79.7 0.3 1.9 1 1 0 1 1 1 1 Subtilase family DUF2001 PF09393.5 gi|557694054|ref|YP_008797108.1| - 0.11 12.2 0.0 2.3 7.9 0.0 2.6 3 0 0 3 3 3 0 Protein of unknown function (DUF2001) HK97-gp10_like PF04883.7 gi|557694056|ref|YP_008797110.1| - 8.9e-15 55.3 0.2 1.4e-14 54.7 0.1 1.3 1 0 0 1 1 1 1 Bacteriophage HK97-gp10, putative tail-component Dermcidin PF15291.1 gi|557694056|ref|YP_008797110.1| - 0.13 12.5 0.2 0.25 11.5 0.0 1.6 2 0 0 2 2 2 0 Dermcidin, antibiotic peptide SNase PF00565.12 gi|557694057|ref|YP_008797111.1| - 1e-12 48.2 0.0 1.6e-12 47.6 0.0 1.3 1 0 0 1 1 1 1 Staphylococcal nuclease homologue DUF240 PF03086.9 gi|557694057|ref|YP_008797111.1| - 0.18 11.4 0.1 0.18 11.4 0.1 1.5 2 0 0 2 2 2 0 MG032/MG096/MG288 family 2 PhageMin_Tail PF10145.4 gi|557694058|ref|YP_008797112.1| - 1.8e-26 93.0 13.6 1.8e-26 93.0 9.4 5.0 2 2 3 5 5 5 1 Phage-related minor tail protein MarR_2 PF12802.2 gi|557694058|ref|YP_008797112.1| - 0.11 12.1 2.0 0.56 9.9 0.3 3.1 2 0 0 2 2 2 0 MarR family Sipho_Gp37 PF14594.1 gi|557694059|ref|YP_008797113.1| - 0.007 15.6 0.0 0.034 13.3 0.0 2.1 1 1 0 1 1 1 1 Siphovirus ReqiPepy6 Gp37-like protein Peptidase_S74 PF13884.1 gi|557694061|ref|YP_008797115.1| - 0.00023 21.2 0.0 0.00039 20.4 0.0 1.4 1 0 0 1 1 1 1 Chaperone of endosialidase Chibby PF14645.1 gi|557694061|ref|YP_008797115.1| - 0.0043 16.9 0.2 0.0093 15.8 0.2 1.5 1 0 0 1 1 1 1 Chibby family HAP1_N PF04849.8 gi|557694061|ref|YP_008797115.1| - 0.017 14.0 0.2 0.025 13.5 0.1 1.2 1 0 0 1 1 1 0 HAP1 N-terminal conserved region bZIP_1 PF00170.16 gi|557694061|ref|YP_008797115.1| - 0.03 14.2 2.5 0.074 13.0 1.7 1.6 1 0 0 1 1 1 0 bZIP transcription factor bZIP_2 PF07716.10 gi|557694061|ref|YP_008797115.1| - 0.031 14.1 3.2 0.066 13.0 2.2 1.6 1 0 0 1 1 1 0 Basic region leucine zipper CtIP_N PF10482.4 gi|557694061|ref|YP_008797115.1| - 0.054 13.2 0.1 0.14 11.9 0.1 1.7 2 0 0 2 2 2 0 Tumour-suppressor protein CtIP N-terminal domain DivIVA PF05103.8 gi|557694061|ref|YP_008797115.1| - 0.066 13.2 2.7 0.086 12.8 1.8 1.2 1 0 0 1 1 1 0 DivIVA protein HALZ PF02183.13 gi|557694061|ref|YP_008797115.1| - 0.11 12.2 3.4 0.25 11.0 2.3 1.6 1 0 0 1 1 1 0 Homeobox associated leucine zipper DivIC PF04977.10 gi|557694061|ref|YP_008797115.1| - 0.23 10.9 1.9 0.41 10.1 1.3 1.4 1 0 0 1 1 1 0 Septum formation initiator Terminase_6 PF03237.10 gi|557694063|ref|YP_008797117.1| - 1e-29 103.4 0.0 1.2e-29 103.2 0.0 1.1 1 0 0 1 1 1 1 Terminase-like family Terminase_1 PF03354.10 gi|557694063|ref|YP_008797117.1| - 1e-08 34.0 0.0 0.00026 19.5 0.0 2.1 2 0 0 2 2 2 2 Phage Terminase Helicase_RecD PF05127.9 gi|557694063|ref|YP_008797117.1| - 0.0016 18.1 0.1 0.0046 16.6 0.0 1.7 2 0 0 2 2 2 1 Helicase EntA_Immun PF08951.5 gi|557694063|ref|YP_008797117.1| - 0.043 13.9 1.0 0.097 12.8 0.7 1.6 1 0 0 1 1 1 0 Enterocin A Immunity Aldo_ket_red PF00248.16 gi|557694064|ref|YP_008797118.1| - 5.7e-78 261.5 0.0 6.4e-78 261.4 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family ABC2_membrane PF01061.19 gi|557694065|ref|YP_008797119.1| - 3.6e-32 111.2 22.7 3.6e-32 111.2 15.7 1.5 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.2 gi|557694065|ref|YP_008797119.1| - 3.3e-11 42.8 26.3 3.3e-11 42.8 18.3 1.7 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.2 gi|557694065|ref|YP_008797119.1| - 6.6e-07 28.4 20.8 1e-06 27.8 14.4 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|557694065|ref|YP_008797119.1| - 1.1e-06 28.0 22.6 1.4e-06 27.6 15.7 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.1 gi|557694065|ref|YP_008797119.1| - 0.0025 17.1 6.2 0.0025 17.1 4.3 1.9 2 1 0 2 2 2 1 ABC-2 family transporter protein DUF3814 PF12769.2 gi|557694065|ref|YP_008797119.1| - 0.009 16.1 1.9 0.097 12.8 0.7 2.9 2 1 0 2 2 2 1 Domain of unknown function (DUF3814) ABC_tran PF00005.22 gi|557694066|ref|YP_008797120.1| - 4.4e-30 104.7 0.0 6e-30 104.3 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|557694066|ref|YP_008797120.1| - 3e-14 53.6 0.0 8.1e-10 39.1 0.0 2.3 2 0 0 2 2 2 2 AAA domain DUF4162 PF13732.1 gi|557694066|ref|YP_008797120.1| - 1.1e-06 28.9 0.0 2.4e-06 27.9 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_23 PF13476.1 gi|557694066|ref|YP_008797120.1| - 0.00016 22.0 0.1 0.00023 21.5 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|557694066|ref|YP_008797120.1| - 0.0017 17.8 0.5 0.0031 17.0 0.3 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain MMR_HSR1 PF01926.18 gi|557694066|ref|YP_008797120.1| - 0.0051 16.7 0.0 0.0076 16.1 0.0 1.4 1 0 0 1 1 1 1 50S ribosome-binding GTPase SRP54 PF00448.17 gi|557694066|ref|YP_008797120.1| - 0.0082 15.6 0.3 0.015 14.7 0.2 1.3 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain AAA_15 PF13175.1 gi|557694066|ref|YP_008797120.1| - 0.016 14.3 0.0 0.21 10.5 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain AAA_25 PF13481.1 gi|557694066|ref|YP_008797120.1| - 0.033 13.5 0.3 5.1 6.4 0.0 2.4 2 0 0 2 2 2 0 AAA domain AAA_22 PF13401.1 gi|557694066|ref|YP_008797120.1| - 0.086 12.9 0.3 0.68 10.0 0.2 2.1 1 1 0 1 1 1 0 AAA domain AAA PF00004.24 gi|557694066|ref|YP_008797120.1| - 0.089 12.9 0.5 1.1 9.4 0.3 2.6 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.1 gi|557694066|ref|YP_008797120.1| - 0.1 12.5 0.1 0.18 11.7 0.1 1.6 1 1 0 1 1 1 0 AAA ATPase domain PadR PF03551.9 gi|557694067|ref|YP_008797121.1| - 3.9e-19 68.1 0.0 6.8e-19 67.4 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family AphA_like PF14557.1 gi|557694067|ref|YP_008797121.1| - 0.0018 17.8 0.1 0.0029 17.1 0.1 1.4 1 1 0 1 1 1 1 Putative AphA-like transcriptional regulator FUR PF01475.14 gi|557694067|ref|YP_008797121.1| - 0.011 15.7 0.0 0.017 15.0 0.0 1.2 1 0 0 1 1 1 0 Ferric uptake regulator family TrmB PF01978.14 gi|557694067|ref|YP_008797121.1| - 0.026 14.2 0.0 0.12 12.0 0.0 2.0 1 1 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB DUF505 PF04458.7 gi|557694067|ref|YP_008797121.1| - 0.032 12.3 0.0 0.047 11.8 0.0 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF505) HTH_5 PF01022.15 gi|557694067|ref|YP_008797121.1| - 0.098 12.3 0.0 1.3 8.7 0.0 2.3 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family Penicillinase_R PF03965.11 gi|557694067|ref|YP_008797121.1| - 0.099 12.7 0.0 0.21 11.6 0.0 1.6 1 0 0 1 1 1 0 Penicillinase repressor HTH_45 PF14947.1 gi|557694067|ref|YP_008797121.1| - 0.1 12.4 0.0 0.21 11.3 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix Replic_Relax PF13814.1 gi|557694067|ref|YP_008797121.1| - 0.15 11.9 0.1 0.24 11.2 0.0 1.5 2 0 0 2 2 2 0 Replication-relaxation DUF2274 PF10038.4 gi|557694068|ref|YP_008797122.1| - 0.0086 16.1 0.1 0.017 15.2 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF2274) Pyridox_oxidase PF01243.15 gi|557694069|ref|YP_008797123.1| - 1.7e-14 53.5 0.0 2.1e-14 53.2 0.0 1.1 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Pyridox_ox_2 PF12900.2 gi|557694069|ref|YP_008797123.1| - 0.0012 18.6 0.1 0.0016 18.2 0.0 1.1 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase KOW PF00467.24 gi|557694069|ref|YP_008797123.1| - 0.41 10.4 2.4 12 5.8 0.0 3.0 4 0 0 4 4 4 0 KOW motif HTH_IclR PF09339.5 gi|557694070|ref|YP_008797124.1| - 1.1e-06 28.1 3.3 1.6e-05 24.3 0.5 2.9 3 0 0 3 3 3 1 IclR helix-turn-helix domain TrmB PF01978.14 gi|557694070|ref|YP_008797124.1| - 0.00013 21.5 0.0 0.074 12.7 0.0 3.5 3 0 0 3 3 3 1 Sugar-specific transcriptional regulator TrmB Rrf2 PF02082.15 gi|557694070|ref|YP_008797124.1| - 0.00022 21.2 0.2 1.4 9.0 0.0 3.2 3 1 0 3 3 3 2 Transcriptional regulator MarR_2 PF12802.2 gi|557694070|ref|YP_008797124.1| - 0.00088 18.9 2.8 0.15 11.7 0.2 3.1 2 1 1 3 3 3 2 MarR family HTH_9 PF08221.6 gi|557694070|ref|YP_008797124.1| - 0.0014 18.4 0.0 0.0047 16.7 0.0 1.9 1 0 0 1 1 1 1 RNA polymerase III subunit RPC82 helix-turn-helix domain HTH_Crp_2 PF13545.1 gi|557694070|ref|YP_008797124.1| - 0.0015 18.2 0.1 0.058 13.1 0.0 2.8 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain HTH_29 PF13551.1 gi|557694070|ref|YP_008797124.1| - 0.0086 16.2 0.4 7.8 6.6 0.0 3.3 3 0 0 3 3 3 1 Winged helix-turn helix HTH_20 PF12840.2 gi|557694070|ref|YP_008797124.1| - 0.018 14.8 0.4 1.6 8.5 0.1 3.1 3 0 0 3 3 3 0 Helix-turn-helix domain HTH_AraC PF00165.18 gi|557694070|ref|YP_008797124.1| - 0.02 14.7 0.0 3.2 7.7 0.0 2.6 2 0 0 2 2 2 0 Bacterial regulatory helix-turn-helix proteins, AraC family MarR PF01047.17 gi|557694070|ref|YP_008797124.1| - 0.026 14.2 0.1 0.29 10.8 0.1 2.3 2 0 0 2 2 2 0 MarR family FaeA PF04703.7 gi|557694070|ref|YP_008797124.1| - 0.07 13.2 0.0 0.33 11.1 0.0 2.1 2 0 0 2 2 2 0 FaeA-like protein HTH_5 PF01022.15 gi|557694070|ref|YP_008797124.1| - 0.075 12.7 0.0 3 7.5 0.0 3.2 4 0 0 4 4 4 0 Bacterial regulatory protein, arsR family HTH_27 PF13463.1 gi|557694070|ref|YP_008797124.1| - 0.1 12.9 0.2 0.41 10.9 0.1 2.1 1 0 0 1 1 1 0 Winged helix DNA-binding domain NTP_transferase PF00483.18 gi|557694071|ref|YP_008797125.1| - 2.4e-26 92.5 0.0 5.1e-26 91.4 0.0 1.5 1 1 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.2 gi|557694071|ref|YP_008797125.1| - 3e-13 50.1 0.0 4.1e-13 49.6 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain DUF651 PF04895.7 gi|557694071|ref|YP_008797125.1| - 0.074 12.6 0.1 0.16 11.6 0.0 1.6 1 1 0 1 1 1 0 Archaeal protein of unknown function (DUF651) ABC_tran PF00005.22 gi|557694072|ref|YP_008797126.1| - 1e-25 90.5 0.0 1.6e-25 89.9 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|557694072|ref|YP_008797126.1| - 5e-15 56.2 1.7 1.7e-07 31.5 0.6 2.1 2 0 0 2 2 2 2 AAA domain AAA_15 PF13175.1 gi|557694072|ref|YP_008797126.1| - 5e-08 32.4 0.1 1.5e-06 27.5 0.1 2.0 2 0 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.1 gi|557694072|ref|YP_008797126.1| - 9.7e-05 22.5 0.4 0.42 10.7 0.0 2.4 2 0 0 2 2 2 2 AAA domain AAA_25 PF13481.1 gi|557694072|ref|YP_008797126.1| - 0.00017 21.0 0.8 0.00046 19.6 0.5 1.8 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|557694072|ref|YP_008797126.1| - 0.00094 19.0 0.3 0.0035 17.2 0.2 1.9 1 1 0 1 1 1 1 AAA domain AAA_14 PF13173.1 gi|557694072|ref|YP_008797126.1| - 0.0029 17.5 0.0 0.012 15.4 0.0 1.9 2 0 0 2 2 2 1 AAA domain SMC_N PF02463.14 gi|557694072|ref|YP_008797126.1| - 0.012 14.8 0.1 3.5 6.8 0.0 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_17 PF13207.1 gi|557694072|ref|YP_008797126.1| - 0.013 16.2 0.2 0.043 14.6 0.0 2.0 2 1 0 2 2 2 0 AAA domain AAA_16 PF13191.1 gi|557694072|ref|YP_008797126.1| - 0.016 15.2 2.7 0.26 11.2 1.9 2.2 1 1 0 1 1 1 0 AAA ATPase domain MutS_V PF00488.16 gi|557694072|ref|YP_008797126.1| - 0.034 13.5 0.0 0.079 12.3 0.0 1.5 1 0 0 1 1 1 0 MutS domain V AAA_28 PF13521.1 gi|557694072|ref|YP_008797126.1| - 0.042 13.7 0.1 0.32 10.9 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_23 PF13476.1 gi|557694072|ref|YP_008797126.1| - 0.042 14.1 0.0 0.069 13.4 0.0 1.2 1 0 0 1 1 1 0 AAA domain Miro PF08477.8 gi|557694072|ref|YP_008797126.1| - 0.044 14.2 0.0 0.12 12.9 0.0 1.6 1 0 0 1 1 1 0 Miro-like protein AAA_30 PF13604.1 gi|557694072|ref|YP_008797126.1| - 0.07 12.7 0.1 0.14 11.7 0.1 1.6 1 1 0 1 1 1 0 AAA domain NAD_binding_10 PF13460.1 gi|557694072|ref|YP_008797126.1| - 0.073 13.0 0.0 0.18 11.8 0.0 1.6 1 0 0 1 1 1 0 NADH(P)-binding AAA PF00004.24 gi|557694072|ref|YP_008797126.1| - 0.087 13.0 0.4 2.1 8.5 0.0 2.2 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) SbcCD_C PF13558.1 gi|557694072|ref|YP_008797126.1| - 0.095 12.6 0.0 0.26 11.2 0.0 1.8 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit UPF0079 PF02367.12 gi|557694072|ref|YP_008797126.1| - 0.1 12.2 0.1 0.21 11.2 0.1 1.5 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 FecCD PF01032.13 gi|557694073|ref|YP_008797127.1| - 3.5e-75 252.7 39.2 4.4e-75 252.4 27.2 1.0 1 0 0 1 1 1 1 FecCD transport family Peripla_BP_2 PF01497.13 gi|557694074|ref|YP_008797128.1| - 2.4e-27 95.5 0.0 3.6e-27 95.0 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding protein FAD_binding_5 PF00941.16 gi|557694075|ref|YP_008797129.1| - 5.5e-35 120.3 0.2 8.6e-35 119.6 0.1 1.2 1 0 0 1 1 1 1 FAD binding domain in molybdopterin dehydrogenase CO_deh_flav_C PF03450.12 gi|557694075|ref|YP_008797129.1| - 6.9e-13 48.4 0.0 1.3e-12 47.4 0.0 1.4 1 0 0 1 1 1 1 CO dehydrogenase flavoprotein C-terminal domain Fer2_2 PF01799.15 gi|557694076|ref|YP_008797130.1| - 3.8e-32 110.0 0.0 6.4e-32 109.2 0.0 1.4 1 0 0 1 1 1 1 [2Fe-2S] binding domain Fer2 PF00111.22 gi|557694076|ref|YP_008797130.1| - 2.4e-10 40.0 2.0 3.3e-10 39.5 0.1 2.0 2 0 0 2 2 2 1 2Fe-2S iron-sulfur cluster binding domain Fer2_3 PF13085.1 gi|557694076|ref|YP_008797130.1| - 1.2e-07 31.5 0.5 1.9e-07 30.8 0.1 1.6 1 1 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer2_4 PF13510.1 gi|557694076|ref|YP_008797130.1| - 0.0045 16.7 0.4 0.019 14.7 0.3 2.1 1 1 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain DHODB_Fe-S_bind PF10418.4 gi|557694076|ref|YP_008797130.1| - 4.5 6.8 11.6 0.14 11.6 3.7 1.7 2 0 0 2 2 2 0 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B Ald_Xan_dh_C2 PF02738.13 gi|557694077|ref|YP_008797131.1| - 1e-76 258.4 0.0 1.5e-76 257.9 0.0 1.1 1 0 0 1 1 1 1 Molybdopterin-binding domain of aldehyde dehydrogenase Ald_Xan_dh_C PF01315.17 gi|557694077|ref|YP_008797131.1| - 4.8e-29 100.6 0.0 8.4e-29 99.8 0.0 1.4 1 0 0 1 1 1 1 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain Ald_Xan_dh_C2 PF02738.13 gi|557694078|ref|YP_008797132.1| - 1.7e-59 201.5 2.5 2.3e-59 201.1 1.7 1.1 1 0 0 1 1 1 1 Molybdopterin-binding domain of aldehyde dehydrogenase Sulf_transp PF04143.9 gi|557694078|ref|YP_008797132.1| - 0.051 13.6 0.8 0.14 12.2 0.5 1.7 1 0 0 1 1 1 0 Sulphur transport Lactamase_B_3 PF13483.1 gi|557694079|ref|YP_008797133.1| - 1.3e-19 70.5 0.0 1.8e-19 70.0 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.2 gi|557694079|ref|YP_008797133.1| - 7.8e-17 61.4 0.0 9.9e-17 61.1 0.0 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|557694079|ref|YP_008797133.1| - 6.6e-05 22.6 1.9 0.00016 21.4 1.3 1.8 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily DUF3237 PF11578.3 gi|557694080|ref|YP_008797134.1| - 4.9e-07 29.1 0.1 1.4e-05 24.4 0.0 2.0 1 1 0 1 1 1 1 Protein of unknown function (DUF3237) ABC_tran PF00005.22 gi|557694082|ref|YP_008797136.1| - 3.7e-26 92.0 0.0 6.4e-26 91.2 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|557694082|ref|YP_008797136.1| - 8.5e-11 42.3 3.7 1.1e-08 35.4 1.1 3.0 2 1 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|557694082|ref|YP_008797136.1| - 0.00026 21.0 0.1 0.00083 19.3 0.1 1.9 1 1 0 1 1 1 1 AAA ATPase domain AAA_33 PF13671.1 gi|557694082|ref|YP_008797136.1| - 0.00045 20.1 0.2 0.0023 17.8 0.2 1.9 1 1 0 1 1 1 1 AAA domain AAA PF00004.24 gi|557694082|ref|YP_008797136.1| - 0.00054 20.1 0.1 0.0026 17.9 0.0 2.2 2 1 1 3 3 3 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.1 gi|557694082|ref|YP_008797136.1| - 0.0027 17.8 0.0 0.0061 16.6 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|557694082|ref|YP_008797136.1| - 0.003 17.0 0.0 0.0055 16.2 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_19 PF13245.1 gi|557694082|ref|YP_008797136.1| - 0.0049 16.5 0.0 0.011 15.4 0.0 1.6 1 0 0 1 1 1 1 Part of AAA domain AAA_17 PF13207.1 gi|557694082|ref|YP_008797136.1| - 0.0079 17.0 0.3 0.029 15.1 0.2 2.0 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.1 gi|557694082|ref|YP_008797136.1| - 0.0085 16.4 1.0 0.034 14.4 0.7 2.0 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|557694082|ref|YP_008797136.1| - 0.012 14.6 0.0 0.69 8.8 0.0 2.1 1 1 1 2 2 2 0 AAA ATPase domain DUF258 PF03193.11 gi|557694082|ref|YP_008797136.1| - 0.013 14.6 0.0 0.023 13.8 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_25 PF13481.1 gi|557694082|ref|YP_008797136.1| - 0.014 14.8 0.0 0.032 13.6 0.0 1.6 1 0 0 1 1 1 0 AAA domain Zeta_toxin PF06414.7 gi|557694082|ref|YP_008797136.1| - 0.015 14.3 0.2 1.5 7.8 0.1 2.2 2 0 0 2 2 2 0 Zeta toxin Arch_ATPase PF01637.13 gi|557694082|ref|YP_008797136.1| - 0.016 14.9 0.0 0.026 14.2 0.0 1.5 1 1 0 1 1 1 0 Archaeal ATPase AAA_10 PF12846.2 gi|557694082|ref|YP_008797136.1| - 0.027 13.9 0.2 0.056 12.8 0.2 1.5 1 0 0 1 1 1 0 AAA-like domain AAA_18 PF13238.1 gi|557694082|ref|YP_008797136.1| - 0.028 14.7 0.1 0.06 13.6 0.1 1.7 1 1 0 1 1 1 0 AAA domain AAA_5 PF07728.9 gi|557694082|ref|YP_008797136.1| - 0.029 14.0 0.0 0.071 12.8 0.0 1.7 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) NACHT PF05729.7 gi|557694082|ref|YP_008797136.1| - 0.046 13.3 0.0 0.081 12.5 0.0 1.4 1 0 0 1 1 1 0 NACHT domain AAA_28 PF13521.1 gi|557694082|ref|YP_008797136.1| - 0.048 13.6 0.0 0.08 12.9 0.0 1.5 1 0 0 1 1 1 0 AAA domain SMC_N PF02463.14 gi|557694082|ref|YP_008797136.1| - 0.048 12.8 0.1 5.8 6.0 0.0 2.2 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain TOBE PF03459.12 gi|557694082|ref|YP_008797136.1| - 0.052 13.6 0.1 0.17 11.9 0.0 2.0 2 0 0 2 2 2 0 TOBE domain UPF0079 PF02367.12 gi|557694082|ref|YP_008797136.1| - 0.061 12.9 0.0 0.14 11.7 0.0 1.6 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 AAA_30 PF13604.1 gi|557694082|ref|YP_008797136.1| - 0.097 12.2 0.0 0.2 11.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain RNA_helicase PF00910.17 gi|557694082|ref|YP_008797136.1| - 0.1 12.7 0.0 0.24 11.5 0.0 1.6 1 0 0 1 1 1 0 RNA helicase DUF3583 PF12126.3 gi|557694082|ref|YP_008797136.1| - 0.16 10.9 0.5 0.39 9.7 0.4 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF3583) YrhC PF14143.1 gi|557694083|ref|YP_008797137.1| - 0.0066 16.3 2.4 0.012 15.5 1.7 1.4 1 0 0 1 1 1 1 YrhC-like protein Neurensin PF14927.1 gi|557694083|ref|YP_008797137.1| - 0.032 13.6 0.4 0.061 12.7 0.0 1.6 1 1 1 2 2 2 0 Neurensin CybS PF05328.7 gi|557694083|ref|YP_008797137.1| - 0.058 13.0 1.4 0.067 12.8 1.0 1.1 1 0 0 1 1 1 0 CybS DUF3938 PF13074.1 gi|557694083|ref|YP_008797137.1| - 0.11 12.3 0.7 0.14 12.0 0.4 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF3938) Tetraspannin PF00335.15 gi|557694083|ref|YP_008797137.1| - 0.44 9.7 2.7 0.43 9.8 1.5 1.3 1 1 0 1 1 1 0 Tetraspanin family DUF1129 PF06570.6 gi|557694083|ref|YP_008797137.1| - 0.56 9.4 3.8 0.52 9.5 2.6 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1129) DUF3040 PF11239.3 gi|557694083|ref|YP_008797137.1| - 0.6 10.1 5.6 2.1 8.4 0.2 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3040) DUF4199 PF13858.1 gi|557694083|ref|YP_008797137.1| - 2.1 8.2 8.2 2.2 8.1 5.7 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF4199) DUF2371 PF10177.4 gi|557694083|ref|YP_008797137.1| - 3.3 7.6 5.5 0.5 10.2 0.3 2.0 1 1 1 2 2 2 0 Uncharacterised conserved protein (DUF2371) SdpI PF13630.1 gi|557694083|ref|YP_008797137.1| - 6 6.6 8.9 3.3 7.4 4.3 1.8 1 1 1 2 2 2 0 SdpI/YhfL protein family ABC_tran PF00005.22 gi|557694084|ref|YP_008797138.1| - 2.2e-34 118.6 0.0 3.8e-34 117.9 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|557694084|ref|YP_008797138.1| - 3.1e-08 33.9 0.0 0.00047 20.2 0.0 2.2 1 1 0 1 1 1 1 AAA domain TOBE_2 PF08402.5 gi|557694084|ref|YP_008797138.1| - 6e-06 26.1 0.0 1.4e-05 24.9 0.0 1.7 1 0 0 1 1 1 1 TOBE domain AAA_23 PF13476.1 gi|557694084|ref|YP_008797138.1| - 0.00021 21.7 0.0 0.00046 20.5 0.0 1.6 1 0 0 1 1 1 1 AAA domain TOBE PF03459.12 gi|557694084|ref|YP_008797138.1| - 0.00054 20.0 1.6 0.033 14.2 0.0 3.4 4 0 0 4 4 3 1 TOBE domain AAA_22 PF13401.1 gi|557694084|ref|YP_008797138.1| - 0.00083 19.5 1.0 0.0069 16.5 0.7 2.1 1 1 0 1 1 1 1 AAA domain UPF0079 PF02367.12 gi|557694084|ref|YP_008797138.1| - 0.00092 18.8 0.1 0.0021 17.6 0.0 1.5 1 0 0 1 1 1 1 Uncharacterised P-loop hydrolase UPF0079 AAA_29 PF13555.1 gi|557694084|ref|YP_008797138.1| - 0.001 18.5 0.0 0.0025 17.3 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.1 gi|557694084|ref|YP_008797138.1| - 0.0047 16.0 0.0 1.3 8.0 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_16 PF13191.1 gi|557694084|ref|YP_008797138.1| - 0.0054 16.7 0.3 0.017 15.1 0.2 1.9 1 1 0 1 1 1 1 AAA ATPase domain DUF258 PF03193.11 gi|557694084|ref|YP_008797138.1| - 0.0067 15.6 0.0 0.022 13.9 0.0 1.9 2 0 0 2 2 2 1 Protein of unknown function, DUF258 AAA_30 PF13604.1 gi|557694084|ref|YP_008797138.1| - 0.0099 15.4 0.0 0.02 14.4 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_10 PF12846.2 gi|557694084|ref|YP_008797138.1| - 0.014 14.8 0.0 0.048 13.0 0.0 1.8 2 0 0 2 2 2 0 AAA-like domain AAA_19 PF13245.1 gi|557694084|ref|YP_008797138.1| - 0.017 14.8 0.1 0.046 13.4 0.1 1.7 1 0 0 1 1 1 0 Part of AAA domain PduV-EutP PF10662.4 gi|557694084|ref|YP_008797138.1| - 0.023 14.1 0.0 0.046 13.2 0.0 1.4 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation Mg_chelatase PF01078.16 gi|557694084|ref|YP_008797138.1| - 0.024 13.7 0.0 0.06 12.4 0.0 1.7 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AsiA PF09010.5 gi|557694084|ref|YP_008797138.1| - 0.028 14.2 0.4 2.6 7.9 0.1 2.4 2 0 0 2 2 2 0 Anti-Sigma Factor A DLIC PF05783.6 gi|557694084|ref|YP_008797138.1| - 0.033 12.8 0.0 0.054 12.1 0.0 1.2 1 0 0 1 1 1 0 Dynein light intermediate chain (DLIC) AAA_33 PF13671.1 gi|557694084|ref|YP_008797138.1| - 0.039 13.8 0.2 0.22 11.4 0.2 2.1 1 1 0 1 1 1 0 AAA domain SMC_N PF02463.14 gi|557694084|ref|YP_008797138.1| - 0.04 13.1 0.0 0.6 9.2 0.0 2.2 1 1 0 1 1 1 0 RecF/RecN/SMC N terminal domain SbcCD_C PF13558.1 gi|557694084|ref|YP_008797138.1| - 0.049 13.5 0.1 0.22 11.4 0.1 2.0 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_25 PF13481.1 gi|557694084|ref|YP_008797138.1| - 0.054 12.8 0.1 0.19 11.0 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA PF00004.24 gi|557694084|ref|YP_008797138.1| - 0.06 13.5 0.1 0.35 11.0 0.0 2.2 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) NB-ARC PF00931.17 gi|557694084|ref|YP_008797138.1| - 0.061 12.1 0.3 0.2 10.4 0.0 1.9 2 1 0 2 2 2 0 NB-ARC domain IMS_C PF11799.3 gi|557694084|ref|YP_008797138.1| - 0.07 13.0 0.5 0.57 10.1 0.0 2.0 1 1 0 2 2 2 0 impB/mucB/samB family C-terminal domain Arch_ATPase PF01637.13 gi|557694084|ref|YP_008797138.1| - 0.081 12.6 0.0 0.13 11.9 0.0 1.5 1 0 0 1 1 1 0 Archaeal ATPase NACHT PF05729.7 gi|557694084|ref|YP_008797138.1| - 0.095 12.3 0.2 0.2 11.3 0.1 1.5 1 0 0 1 1 1 0 NACHT domain AAA_14 PF13173.1 gi|557694084|ref|YP_008797138.1| - 0.1 12.5 0.0 0.69 9.8 0.0 2.3 2 1 0 2 2 2 0 AAA domain AAA_17 PF13207.1 gi|557694084|ref|YP_008797138.1| - 0.11 13.3 1.0 0.44 11.3 0.7 2.2 1 1 0 1 1 1 0 AAA domain IstB_IS21 PF01695.12 gi|557694084|ref|YP_008797138.1| - 0.13 11.6 0.0 0.27 10.6 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein BPD_transp_1 PF00528.17 gi|557694085|ref|YP_008797139.1| - 6.9e-21 74.5 18.9 6.9e-21 74.5 13.1 2.0 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component DUF3981 PF13139.1 gi|557694085|ref|YP_008797139.1| - 0.57 10.2 4.5 8.5 6.4 0.0 2.8 3 1 0 3 3 3 0 Domain of unknown function (DUF3981) BPD_transp_1 PF00528.17 gi|557694086|ref|YP_008797140.1| - 4.7e-12 45.7 20.2 4.7e-12 45.7 14.0 2.1 1 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_1 PF01547.20 gi|557694087|ref|YP_008797141.1| - 1.8e-14 54.2 0.9 3.2e-14 53.3 0.0 1.9 2 1 0 2 2 2 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.1 gi|557694087|ref|YP_008797141.1| - 4.1e-14 52.9 0.0 6.9e-14 52.2 0.0 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein Aldedh PF00171.17 gi|557694088|ref|YP_008797142.1| - 2e-169 563.8 0.1 2.3e-169 563.6 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family LuxC PF05893.9 gi|557694088|ref|YP_008797142.1| - 3.9e-05 22.5 0.0 8.1e-05 21.5 0.0 1.4 1 0 0 1 1 1 1 Acyl-CoA reductase (LuxC) M157 PF11624.3 gi|557694088|ref|YP_008797142.1| - 0.073 12.1 0.0 0.11 11.5 0.0 1.1 1 0 0 1 1 1 0 MHC class I-like protein M157 FAA_hydrolase PF01557.13 gi|557694089|ref|YP_008797143.1| - 5.4e-34 117.5 0.0 6.8e-34 117.2 0.0 1.1 1 0 0 1 1 1 1 Fumarylacetoacetate (FAA) hydrolase family AlkA_N PF06029.6 gi|557694089|ref|YP_008797143.1| - 0.14 12.2 0.0 5 7.2 0.0 2.2 2 0 0 2 2 2 0 AlkA N-terminal domain Epimerase PF01370.16 gi|557694090|ref|YP_008797144.1| - 2.6e-34 118.7 0.0 3.2e-34 118.3 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|557694090|ref|YP_008797144.1| - 1e-16 60.5 0.0 1.3e-16 60.1 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.12 gi|557694090|ref|YP_008797144.1| - 2e-13 49.8 0.0 2.5e-13 49.5 0.0 1.2 1 0 0 1 1 1 1 RmlD substrate binding domain Polysacc_synt_2 PF02719.10 gi|557694090|ref|YP_008797144.1| - 2.7e-12 46.2 0.0 1e-11 44.2 0.0 1.8 1 1 1 2 2 2 1 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.7 gi|557694090|ref|YP_008797144.1| - 2.5e-08 33.1 0.0 0.00052 19.0 0.0 2.2 2 0 0 2 2 2 2 Male sterility protein adh_short PF00106.20 gi|557694090|ref|YP_008797144.1| - 4.3e-05 23.4 0.0 8.8e-05 22.4 0.0 1.5 1 0 0 1 1 1 1 short chain dehydrogenase NAD_binding_10 PF13460.1 gi|557694090|ref|YP_008797144.1| - 6.5e-05 23.0 0.0 0.0001 22.3 0.0 1.5 1 1 0 1 1 1 1 NADH(P)-binding NmrA PF05368.8 gi|557694090|ref|YP_008797144.1| - 0.0057 15.9 1.4 0.028 13.6 0.4 2.3 2 1 0 2 2 2 1 NmrA-like family Saccharop_dh PF03435.13 gi|557694090|ref|YP_008797144.1| - 0.018 14.0 0.0 0.03 13.2 0.0 1.3 1 0 0 1 1 1 0 Saccharopine dehydrogenase KR PF08659.5 gi|557694090|ref|YP_008797144.1| - 0.076 12.6 0.0 0.14 11.8 0.0 1.5 1 0 0 1 1 1 0 KR domain HpcH_HpaI PF03328.9 gi|557694091|ref|YP_008797145.1| - 1.1e-42 145.4 1.2 1.2e-42 145.2 0.8 1.0 1 0 0 1 1 1 1 HpcH/HpaI aldolase/citrate lyase family S4 PF01479.20 gi|557694091|ref|YP_008797145.1| - 0.072 12.5 0.0 0.18 11.2 0.0 1.6 1 0 0 1 1 1 0 S4 domain Response_reg PF00072.19 gi|557694091|ref|YP_008797145.1| - 0.093 12.7 0.4 0.35 10.8 0.0 2.1 3 1 0 3 3 3 0 Response regulator receiver domain PAC2 PF09754.4 gi|557694092|ref|YP_008797146.1| - 5.8e-26 91.7 0.0 7.1e-26 91.4 0.0 1.0 1 0 0 1 1 1 1 PAC2 family DUF350 PF03994.9 gi|557694093|ref|YP_008797147.1| - 3.4e-09 36.2 0.8 1e-08 34.7 0.6 1.9 1 1 0 1 1 1 1 Domain of Unknown Function (DUF350) DUF2232 PF09991.4 gi|557694093|ref|YP_008797147.1| - 0.0082 15.1 1.2 0.0091 15.0 0.8 1.2 1 0 0 1 1 1 1 Predicted membrane protein (DUF2232) MVIN PF03023.9 gi|557694093|ref|YP_008797147.1| - 0.013 13.9 1.7 0.014 13.8 1.2 1.0 1 0 0 1 1 1 0 MviN-like protein DUF4029 PF13221.1 gi|557694093|ref|YP_008797147.1| - 0.029 14.7 1.4 0.036 14.4 1.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF4029) Brr6_like_C_C PF10104.4 gi|557694093|ref|YP_008797147.1| - 0.036 13.5 1.1 0.042 13.3 0.3 1.5 1 1 0 1 1 1 0 Di-sulfide bridge nucleocytoplasmic transport domain ABC_cobalt PF09819.4 gi|557694093|ref|YP_008797147.1| - 0.045 13.7 2.0 0.048 13.6 1.4 1.0 1 0 0 1 1 1 0 ABC-type cobalt transport system, permease component SieB PF14163.1 gi|557694093|ref|YP_008797147.1| - 0.12 11.9 3.3 0.29 10.7 1.8 1.7 1 1 0 1 1 1 0 Superinfection exclusion protein B DUF3953 PF13129.1 gi|557694093|ref|YP_008797147.1| - 3.2 7.4 7.0 0.65 9.6 0.1 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3953) STT3 PF02516.9 gi|557694095|ref|YP_008797149.1| - 2.4e-48 165.3 25.5 3.3e-48 164.8 17.7 1.1 1 0 0 1 1 1 1 Oligosaccharyl transferase STT3 subunit PQQ_3 PF13570.1 gi|557694096|ref|YP_008797150.1| - 0.11 12.8 11.6 0.83 10.0 0.7 4.3 4 0 0 4 4 4 0 PQQ-like domain Rifin_STEVOR PF02009.11 gi|557694096|ref|YP_008797150.1| - 1.8 8.1 11.0 3 7.4 7.6 1.3 1 0 0 1 1 1 0 Rifin/stevor family TFIIA PF03153.8 gi|557694096|ref|YP_008797150.1| - 7.7 6.2 10.2 9.8 5.9 7.0 1.1 1 0 0 1 1 1 0 Transcription factor IIA, alpha/beta subunit Ribonuc_L-PSP PF01042.16 gi|557694097|ref|YP_008797151.1| - 3.1e-37 126.9 0.0 3.5e-37 126.8 0.0 1.0 1 0 0 1 1 1 1 Endoribonuclease L-PSP Peptidase_M24 PF00557.19 gi|557694098|ref|YP_008797152.1| - 2.5e-40 138.2 0.0 3.3e-40 137.8 0.0 1.1 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.13 gi|557694098|ref|YP_008797152.1| - 1.4e-18 67.7 0.0 1.1e-17 64.7 0.0 2.1 2 0 0 2 2 2 1 Creatinase/Prolidase N-terminal domain ABC_tran PF00005.22 gi|557694099|ref|YP_008797153.1| - 1.1e-30 106.6 0.0 1.7e-30 106.0 0.0 1.3 1 0 0 1 1 1 1 ABC transporter TOBE_2 PF08402.5 gi|557694099|ref|YP_008797153.1| - 1e-09 38.2 0.0 3.1e-09 36.6 0.0 1.9 2 0 0 2 2 2 1 TOBE domain AAA_21 PF13304.1 gi|557694099|ref|YP_008797153.1| - 1.4e-08 35.1 0.0 0.00029 20.9 0.0 2.3 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|557694099|ref|YP_008797153.1| - 9.4e-05 21.7 0.0 0.0013 18.0 0.0 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain TOBE PF03459.12 gi|557694099|ref|YP_008797153.1| - 0.00015 21.7 0.0 0.002 18.1 0.0 2.7 2 1 0 2 2 2 1 TOBE domain Rad17 PF03215.10 gi|557694099|ref|YP_008797153.1| - 0.00026 19.8 0.0 0.00033 19.4 0.0 1.1 1 0 0 1 1 1 1 Rad17 cell cycle checkpoint protein DUF258 PF03193.11 gi|557694099|ref|YP_008797153.1| - 0.00045 19.4 0.0 0.00079 18.6 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_29 PF13555.1 gi|557694099|ref|YP_008797153.1| - 0.002 17.5 0.2 0.0065 15.9 0.1 1.9 2 0 0 2 2 2 1 P-loop containing region of AAA domain AAA_10 PF12846.2 gi|557694099|ref|YP_008797153.1| - 0.0073 15.7 0.0 0.011 15.1 0.0 1.3 1 0 0 1 1 1 1 AAA-like domain AAA_23 PF13476.1 gi|557694099|ref|YP_008797153.1| - 0.01 16.1 0.1 0.019 15.3 0.1 1.3 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.1 gi|557694099|ref|YP_008797153.1| - 0.019 15.1 0.0 0.044 13.9 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.1 gi|557694099|ref|YP_008797153.1| - 0.019 14.8 0.0 0.052 13.4 0.0 1.9 2 1 0 2 2 2 0 AAA domain AAA_16 PF13191.1 gi|557694099|ref|YP_008797153.1| - 0.034 14.1 0.1 0.088 12.7 0.0 1.6 2 0 0 2 2 2 0 AAA ATPase domain AIG1 PF04548.11 gi|557694099|ref|YP_008797153.1| - 0.062 12.4 0.0 0.12 11.4 0.0 1.4 1 0 0 1 1 1 0 AIG1 family SbcCD_C PF13558.1 gi|557694099|ref|YP_008797153.1| - 0.068 13.0 0.0 0.43 10.5 0.0 2.1 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit Arch_ATPase PF01637.13 gi|557694099|ref|YP_008797153.1| - 0.078 12.6 0.0 0.13 11.8 0.0 1.3 1 0 0 1 1 1 0 Archaeal ATPase RNA_helicase PF00910.17 gi|557694099|ref|YP_008797153.1| - 0.08 13.1 0.0 0.53 10.4 0.0 2.3 2 0 0 2 2 2 0 RNA helicase AAA_28 PF13521.1 gi|557694099|ref|YP_008797153.1| - 0.088 12.7 0.2 0.31 10.9 0.1 1.8 2 0 0 2 2 2 0 AAA domain AAA_14 PF13173.1 gi|557694099|ref|YP_008797153.1| - 0.11 12.3 0.0 0.24 11.2 0.0 1.6 1 0 0 1 1 1 0 AAA domain Arr-ms PF12120.3 gi|557694099|ref|YP_008797153.1| - 0.13 12.2 0.0 0.8 9.6 0.0 2.3 2 1 0 2 2 2 0 Rifampin ADP-ribosyl transferase BPD_transp_1 PF00528.17 gi|557694100|ref|YP_008797154.1| - 8.2e-21 74.3 17.5 8.2e-21 74.3 12.1 2.1 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.17 gi|557694101|ref|YP_008797155.1| - 2.5e-07 30.3 24.8 2.5e-07 30.3 17.2 2.1 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_8 PF13416.1 gi|557694102|ref|YP_008797156.1| - 1.5e-17 64.2 3.4 2.8e-17 63.3 2.3 1.4 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.20 gi|557694102|ref|YP_008797156.1| - 3.8e-08 33.4 4.0 6.2e-08 32.7 2.7 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein MacB_PCD PF12704.2 gi|557694102|ref|YP_008797156.1| - 0.0098 15.5 0.1 0.017 14.7 0.0 1.4 1 0 0 1 1 1 1 MacB-like periplasmic core domain ETRAMP PF09716.5 gi|557694102|ref|YP_008797156.1| - 0.12 12.3 0.2 0.25 11.3 0.1 1.5 1 0 0 1 1 1 0 Malarial early transcribed membrane protein (ETRAMP) Ala_racemase_N PF01168.15 gi|557694103|ref|YP_008797157.1| - 1.1e-31 110.1 0.1 1.4e-31 109.7 0.0 1.1 1 0 0 1 1 1 1 Alanine racemase, N-terminal domain D-ser_dehydrat PF14031.1 gi|557694103|ref|YP_008797157.1| - 2.2e-21 75.8 0.1 5.4e-21 74.5 0.0 1.7 1 0 0 1 1 1 1 Putative serine dehydratase domain phage_tail_N PF08400.5 gi|557694103|ref|YP_008797157.1| - 0.024 14.3 0.0 0.079 12.6 0.0 1.9 1 0 0 1 1 1 0 Prophage tail fibre N-terminal DUF3834 PF12916.2 gi|557694103|ref|YP_008797157.1| - 0.026 13.5 0.1 0.038 12.9 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3834) CRISPR_Cse2 PF09485.5 gi|557694103|ref|YP_008797157.1| - 0.04 13.9 0.1 0.38 10.7 0.0 2.3 2 0 0 2 2 2 0 CRISPR-associated protein Cse2 (CRISPR_cse2) Bac_luciferase PF00296.15 gi|557694104|ref|YP_008797158.1| - 4.4e-54 183.6 0.0 5.4e-54 183.3 0.0 1.0 1 0 0 1 1 1 1 Luciferase-like monooxygenase EamA PF00892.15 gi|557694105|ref|YP_008797159.1| - 2.5e-25 88.9 28.3 7.7e-13 48.5 5.7 2.5 2 1 1 3 3 3 2 EamA-like transporter family EmrE PF13536.1 gi|557694105|ref|YP_008797159.1| - 2.3e-07 30.9 27.0 3.4e-05 24.0 7.6 2.9 1 1 2 3 3 3 2 Multidrug resistance efflux transporter Nuc_sug_transp PF04142.10 gi|557694105|ref|YP_008797159.1| - 9.9e-07 28.1 2.1 0.0027 16.8 0.4 2.4 2 0 0 2 2 2 2 Nucleotide-sugar transporter TPT PF03151.11 gi|557694105|ref|YP_008797159.1| - 0.079 12.6 18.0 0.17 11.5 3.1 2.9 2 2 0 2 2 2 0 Triose-phosphate Transporter family Bac_luciferase PF00296.15 gi|557694106|ref|YP_008797160.1| - 3.9e-60 203.5 0.0 4.8e-60 203.2 0.0 1.0 1 0 0 1 1 1 1 Luciferase-like monooxygenase Cpn60_TCP1 PF00118.19 gi|557694107|ref|YP_008797161.1| - 1.9e-107 359.9 0.0 2.2e-107 359.7 0.0 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family Enolase_C PF00113.17 gi|557694108|ref|YP_008797162.1| - 1.1e-89 300.4 0.0 1.3e-89 300.0 0.0 1.1 1 0 0 1 1 1 1 Enolase, C-terminal TIM barrel domain Enolase_N PF03952.11 gi|557694108|ref|YP_008797162.1| - 2.6e-47 160.0 0.0 3.9e-47 159.4 0.0 1.3 1 0 0 1 1 1 1 Enolase, N-terminal domain MR_MLE_C PF13378.1 gi|557694108|ref|YP_008797162.1| - 0.0016 18.3 0.0 0.0047 16.8 0.0 1.8 1 0 0 1 1 1 1 Enolase C-terminal domain-like MAAL_C PF07476.6 gi|557694108|ref|YP_008797162.1| - 0.0024 16.8 0.2 0.01 14.8 0.0 2.0 2 0 0 2 2 2 1 Methylaspartate ammonia-lyase C-terminus APH PF01636.18 gi|557694109|ref|YP_008797163.1| - 2.9e-16 59.9 0.0 4.5e-16 59.2 0.0 1.4 1 0 0 1 1 1 1 Phosphotransferase enzyme family Choline_kinase PF01633.15 gi|557694109|ref|YP_008797163.1| - 0.0012 18.5 0.6 0.0079 15.7 0.0 2.4 1 1 1 2 2 2 1 Choline/ethanolamine kinase APH_6_hur PF04655.9 gi|557694109|ref|YP_008797163.1| - 0.0015 17.7 0.0 0.0079 15.3 0.0 2.2 1 1 0 1 1 1 1 Aminoglycoside/hydroxyurea antibiotic resistance kinase RIO1 PF01163.17 gi|557694109|ref|YP_008797163.1| - 0.04 13.2 0.0 0.08 12.2 0.0 1.4 1 0 0 1 1 1 0 RIO1 family EcKinase PF02958.15 gi|557694109|ref|YP_008797163.1| - 0.062 12.4 0.0 0.093 11.8 0.0 1.3 1 0 0 1 1 1 0 Ecdysteroid kinase Phage_gp53 PF11246.3 gi|557694109|ref|YP_008797163.1| - 0.082 12.3 0.1 0.13 11.7 0.1 1.3 1 0 0 1 1 1 0 Base plate wedge protein 53 GFO_IDH_MocA PF01408.17 gi|557694110|ref|YP_008797164.1| - 2.7e-31 108.5 0.2 5e-31 107.7 0.1 1.5 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.12 gi|557694110|ref|YP_008797164.1| - 0.00039 20.1 0.0 0.0008 19.1 0.0 1.6 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain IlvN PF07991.7 gi|557694110|ref|YP_008797164.1| - 0.028 13.7 0.0 0.056 12.8 0.0 1.4 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, catalytic domain DUF4432 PF14486.1 gi|557694111|ref|YP_008797165.1| - 1.3e-18 66.5 0.0 4.4e-18 64.8 0.0 1.7 1 1 0 1 1 1 1 Domain of unknown function (DUF4432) Aldose_epim PF01263.15 gi|557694111|ref|YP_008797165.1| - 0.11 11.6 0.0 0.17 10.9 0.0 1.3 1 0 0 1 1 1 0 Aldose 1-epimerase Creatininase PF02633.9 gi|557694112|ref|YP_008797166.1| - 2.3e-62 210.2 0.0 2.6e-62 209.9 0.0 1.0 1 0 0 1 1 1 1 Creatinine amidohydrolase Peptidase_M19 PF01244.16 gi|557694113|ref|YP_008797167.1| - 2e-84 283.2 0.0 2.5e-84 282.9 0.0 1.0 1 0 0 1 1 1 1 Membrane dipeptidase (Peptidase family M19) Amidohydro_2 PF04909.9 gi|557694113|ref|YP_008797167.1| - 0.00011 21.8 0.0 0.0002 21.0 0.0 1.5 1 1 0 1 1 1 1 Amidohydrolase SBP_bac_1 PF01547.20 gi|557694114|ref|YP_008797168.1| - 6.5e-17 62.2 6.5 1.2e-16 61.3 4.5 1.4 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.1 gi|557694114|ref|YP_008797168.1| - 2.5e-15 56.9 2.3 2.5e-15 56.9 1.6 1.5 2 0 0 2 2 2 1 Bacterial extracellular solute-binding protein CytB6-F_Fe-S PF08802.5 gi|557694114|ref|YP_008797168.1| - 0.064 13.2 0.2 0.14 12.1 0.1 1.6 1 0 0 1 1 1 0 Cytochrome B6-F complex Fe-S subunit BPD_transp_1 PF00528.17 gi|557694115|ref|YP_008797169.1| - 2.3e-07 30.5 32.6 2.3e-07 30.5 22.6 2.2 2 1 1 3 3 3 2 Binding-protein-dependent transport system inner membrane component SKG6 PF08693.5 gi|557694115|ref|YP_008797169.1| - 2.4 7.5 9.6 1.4 8.3 0.6 2.7 2 0 0 2 2 2 0 Transmembrane alpha-helix domain BPD_transp_1 PF00528.17 gi|557694116|ref|YP_008797170.1| - 5.9e-14 51.9 21.7 5.9e-14 51.9 15.0 2.6 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.22 gi|557694117|ref|YP_008797171.1| - 1.9e-32 112.4 0.0 3.1e-32 111.7 0.0 1.3 1 0 0 1 1 1 1 ABC transporter TOBE_2 PF08402.5 gi|557694117|ref|YP_008797171.1| - 2.8e-10 40.0 0.0 6.1e-10 38.9 0.0 1.6 1 0 0 1 1 1 1 TOBE domain TOBE PF03459.12 gi|557694117|ref|YP_008797171.1| - 9.2e-06 25.6 0.0 3.8e-05 23.6 0.0 2.1 2 0 0 2 2 2 1 TOBE domain AAA_21 PF13304.1 gi|557694117|ref|YP_008797171.1| - 3.9e-05 23.7 0.0 0.048 13.6 0.0 2.2 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|557694117|ref|YP_008797171.1| - 0.0023 17.2 0.0 0.0048 16.1 0.0 1.4 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_17 PF13207.1 gi|557694117|ref|YP_008797171.1| - 0.0024 18.6 0.1 0.0058 17.4 0.1 1.8 1 1 0 1 1 1 1 AAA domain AAA PF00004.24 gi|557694117|ref|YP_008797171.1| - 0.0032 17.6 0.0 0.0072 16.5 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.1 gi|557694117|ref|YP_008797171.1| - 0.0036 17.4 0.0 0.0094 16.0 0.0 1.7 1 0 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|557694117|ref|YP_008797171.1| - 0.0038 16.9 0.1 0.0089 15.7 0.0 1.7 1 0 0 1 1 1 1 Part of AAA domain AAA_18 PF13238.1 gi|557694117|ref|YP_008797171.1| - 0.01 16.1 0.1 0.031 14.5 0.0 1.7 1 1 0 1 1 1 0 AAA domain AAA_23 PF13476.1 gi|557694117|ref|YP_008797171.1| - 0.011 16.0 0.0 0.021 15.1 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.1 gi|557694117|ref|YP_008797171.1| - 0.013 15.4 0.0 0.026 14.3 0.0 1.7 1 1 0 1 1 1 0 AAA domain cobW PF02492.14 gi|557694117|ref|YP_008797171.1| - 0.013 14.9 0.0 0.024 14.1 0.0 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain RuvB_N PF05496.7 gi|557694117|ref|YP_008797171.1| - 0.016 14.2 0.3 0.15 11.0 0.1 2.1 1 1 0 2 2 2 0 Holliday junction DNA helicase ruvB N-terminus AAA_28 PF13521.1 gi|557694117|ref|YP_008797171.1| - 0.018 15.0 0.0 0.07 13.0 0.0 1.9 2 1 0 2 2 2 0 AAA domain UPF0079 PF02367.12 gi|557694117|ref|YP_008797171.1| - 0.019 14.5 0.4 0.04 13.5 0.0 1.7 2 0 0 2 2 1 0 Uncharacterised P-loop hydrolase UPF0079 Zeta_toxin PF06414.7 gi|557694117|ref|YP_008797171.1| - 0.026 13.6 0.0 0.078 12.0 0.0 1.8 2 0 0 2 2 2 0 Zeta toxin AAA_25 PF13481.1 gi|557694117|ref|YP_008797171.1| - 0.032 13.6 0.0 0.06 12.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_29 PF13555.1 gi|557694117|ref|YP_008797171.1| - 0.042 13.3 0.0 0.099 12.1 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_30 PF13604.1 gi|557694117|ref|YP_008797171.1| - 0.053 13.0 0.0 0.1 12.1 0.0 1.4 1 0 0 1 1 1 0 AAA domain NB-ARC PF00931.17 gi|557694117|ref|YP_008797171.1| - 0.062 12.1 0.0 0.1 11.4 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain DUF258 PF03193.11 gi|557694117|ref|YP_008797171.1| - 0.064 12.4 0.0 0.11 11.6 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_10 PF12846.2 gi|557694117|ref|YP_008797171.1| - 0.071 12.5 0.0 0.12 11.7 0.0 1.3 1 0 0 1 1 1 0 AAA-like domain Rad17 PF03215.10 gi|557694117|ref|YP_008797171.1| - 0.081 11.5 0.0 0.11 11.1 0.0 1.1 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein ATP-synt_ab PF00006.20 gi|557694117|ref|YP_008797171.1| - 0.082 12.3 0.0 0.11 11.9 0.0 1.4 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_16 PF13191.1 gi|557694117|ref|YP_008797171.1| - 0.085 12.8 0.0 0.14 12.1 0.0 1.5 1 1 0 1 1 1 0 AAA ATPase domain MoeA_C PF03454.10 gi|557694117|ref|YP_008797171.1| - 0.091 12.7 0.1 0.18 11.7 0.1 1.5 1 0 0 1 1 1 0 MoeA C-terminal region (domain IV) NACHT PF05729.7 gi|557694117|ref|YP_008797171.1| - 0.099 12.2 0.0 0.55 9.8 0.0 2.1 2 0 0 2 2 2 0 NACHT domain ABC_tran PF00005.22 gi|557694118|ref|YP_008797172.1| - 6.7e-29 100.9 0.0 1.1e-28 100.2 0.0 1.3 1 0 0 1 1 1 1 ABC transporter TOBE PF03459.12 gi|557694118|ref|YP_008797172.1| - 3.7e-07 30.1 0.0 6.6e-06 26.1 0.0 2.9 3 0 0 3 3 3 1 TOBE domain TOBE_2 PF08402.5 gi|557694118|ref|YP_008797172.1| - 9.4e-07 28.7 0.0 2.8e-06 27.2 0.0 1.8 2 0 0 2 2 2 1 TOBE domain AAA_15 PF13175.1 gi|557694118|ref|YP_008797172.1| - 9.6e-06 24.8 0.0 0.00021 20.4 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain AAA_21 PF13304.1 gi|557694118|ref|YP_008797172.1| - 6.5e-05 23.0 0.0 0.022 14.7 0.0 2.3 1 1 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|557694118|ref|YP_008797172.1| - 0.011 14.9 0.0 0.021 14.0 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_22 PF13401.1 gi|557694118|ref|YP_008797172.1| - 0.012 15.6 1.8 0.11 12.5 1.2 2.2 1 1 0 1 1 1 0 AAA domain Rad17 PF03215.10 gi|557694118|ref|YP_008797172.1| - 0.015 13.9 0.0 0.02 13.5 0.0 1.1 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein AAA_16 PF13191.1 gi|557694118|ref|YP_008797172.1| - 0.019 14.9 0.0 0.038 13.9 0.0 1.5 1 0 0 1 1 1 0 AAA ATPase domain AAA PF00004.24 gi|557694118|ref|YP_008797172.1| - 0.034 14.3 0.7 0.09 12.9 0.5 1.9 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_33 PF13671.1 gi|557694118|ref|YP_008797172.1| - 0.064 13.1 0.0 0.71 9.7 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_18 PF13238.1 gi|557694118|ref|YP_008797172.1| - 0.07 13.4 0.2 0.19 12.0 0.1 1.9 1 1 0 1 1 1 0 AAA domain AAA_25 PF13481.1 gi|557694118|ref|YP_008797172.1| - 0.13 11.6 0.3 0.48 9.7 0.1 1.9 1 1 1 2 2 2 0 AAA domain GFO_IDH_MocA PF01408.17 gi|557694119|ref|YP_008797173.1| - 9.7e-26 90.6 1.2 1.6e-25 89.9 0.9 1.3 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold Semialdhyde_dh PF01118.19 gi|557694119|ref|YP_008797173.1| - 1.8e-07 31.4 1.1 3e-07 30.7 0.1 1.8 2 0 0 2 2 2 1 Semialdehyde dehydrogenase, NAD binding domain GFO_IDH_MocA_C PF02894.12 gi|557694119|ref|YP_008797173.1| - 4.2e-07 29.7 0.0 1e-06 28.5 0.0 1.7 1 1 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain NAD_binding_3 PF03447.11 gi|557694119|ref|YP_008797173.1| - 1.8e-06 28.3 0.5 3.2e-06 27.5 0.3 1.5 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain Shikimate_DH PF01488.15 gi|557694119|ref|YP_008797173.1| - 0.00022 21.3 0.3 0.00038 20.5 0.2 1.3 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase Response_reg PF00072.19 gi|557694119|ref|YP_008797173.1| - 0.004 17.1 0.2 0.75 9.8 0.0 2.5 1 1 1 2 2 2 1 Response regulator receiver domain MTS PF05175.9 gi|557694119|ref|YP_008797173.1| - 0.0082 15.5 0.1 0.014 14.7 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase small domain NAD_binding_7 PF13241.1 gi|557694119|ref|YP_008797173.1| - 0.011 15.9 0.4 0.027 14.7 0.3 1.5 1 0 0 1 1 1 0 Putative NAD(P)-binding G6PD_N PF00479.17 gi|557694119|ref|YP_008797173.1| - 0.012 15.8 0.2 0.035 14.3 0.0 1.8 2 0 0 2 2 2 0 Glucose-6-phosphate dehydrogenase, NAD binding domain F420_oxidored PF03807.12 gi|557694119|ref|YP_008797173.1| - 0.024 15.0 1.0 0.067 13.6 0.2 2.1 2 0 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent OCD_Mu_crystall PF02423.10 gi|557694119|ref|YP_008797173.1| - 0.026 13.2 0.6 0.048 12.4 0.4 1.5 1 1 0 1 1 1 0 Ornithine cyclodeaminase/mu-crystallin family CMAS PF02353.15 gi|557694119|ref|YP_008797173.1| - 0.1 11.6 0.0 0.15 11.1 0.0 1.3 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase Methyltransf_31 PF13847.1 gi|557694119|ref|YP_008797173.1| - 0.13 11.8 0.1 0.22 11.0 0.1 1.4 1 0 0 1 1 1 0 Methyltransferase domain GFO_IDH_MocA PF01408.17 gi|557694120|ref|YP_008797174.1| - 1.6e-29 102.8 0.0 2.4e-29 102.2 0.0 1.3 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.12 gi|557694120|ref|YP_008797174.1| - 7.4e-13 48.3 0.0 1.3e-12 47.5 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain NAD_binding_3 PF03447.11 gi|557694120|ref|YP_008797174.1| - 4.4e-09 36.7 0.0 6.2e-09 36.2 0.0 1.2 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain DapB_N PF01113.15 gi|557694120|ref|YP_008797174.1| - 0.0016 18.3 0.0 0.0027 17.5 0.0 1.4 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus Semialdhyde_dh PF01118.19 gi|557694120|ref|YP_008797174.1| - 0.0026 18.0 0.0 0.0045 17.2 0.0 1.3 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain F420_oxidored PF03807.12 gi|557694120|ref|YP_008797174.1| - 0.0074 16.6 0.0 0.013 15.8 0.0 1.4 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent OCD_Mu_crystall PF02423.10 gi|557694120|ref|YP_008797174.1| - 0.024 13.4 0.0 0.036 12.8 0.0 1.2 1 0 0 1 1 1 0 Ornithine cyclodeaminase/mu-crystallin family RdRP PF05183.7 gi|557694120|ref|YP_008797174.1| - 0.14 10.8 0.0 0.19 10.3 0.0 1.1 1 0 0 1 1 1 0 RNA dependent RNA polymerase GFO_IDH_MocA PF01408.17 gi|557694121|ref|YP_008797175.1| - 7.6e-24 84.5 0.2 1.1e-23 83.9 0.2 1.3 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.12 gi|557694121|ref|YP_008797175.1| - 7.3e-10 38.6 0.1 1.6e-09 37.5 0.0 1.6 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain NAD_binding_3 PF03447.11 gi|557694121|ref|YP_008797175.1| - 0.00094 19.5 0.3 0.0017 18.7 0.2 1.4 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain DapB_N PF01113.15 gi|557694121|ref|YP_008797175.1| - 0.062 13.2 0.1 0.11 12.4 0.1 1.4 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus Methyltransf_6 PF03737.10 gi|557694122|ref|YP_008797176.1| - 5.8e-25 87.9 0.2 7.5e-25 87.5 0.1 1.1 1 0 0 1 1 1 1 Demethylmenaquinone methyltransferase OCD_Mu_crystall PF02423.10 gi|557694123|ref|YP_008797177.1| - 3.3e-87 292.1 5.3 3.8e-87 291.9 3.7 1.0 1 0 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family Shikimate_DH PF01488.15 gi|557694123|ref|YP_008797177.1| - 0.00012 22.2 0.2 0.00022 21.3 0.1 1.5 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase OST3_OST6 PF04756.8 gi|557694124|ref|YP_008797178.1| - 0.0014 18.2 2.2 0.0017 17.9 1.5 1.1 1 0 0 1 1 1 1 OST3 / OST6 family DUF3754 PF12576.3 gi|557694124|ref|YP_008797178.1| - 0.16 11.6 1.1 0.23 11.1 0.8 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3754) DUF998 PF06197.8 gi|557694124|ref|YP_008797178.1| - 1.9 7.7 14.0 7.7 5.7 9.7 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF998) Abhydrolase_9_N PF15420.1 gi|557694124|ref|YP_008797178.1| - 2.4 7.8 8.4 3 7.5 1.9 2.0 2 0 0 2 2 2 0 Alpha/beta-hydrolase family N-terminus MARVEL PF01284.18 gi|557694124|ref|YP_008797178.1| - 3.1 7.5 11.9 7.8 6.3 7.0 2.0 1 1 1 2 2 2 0 Membrane-associating domain DUF4405 PF14358.1 gi|557694124|ref|YP_008797178.1| - 8.8 6.5 10.7 8.3 6.6 3.6 2.8 2 1 0 2 2 2 0 Domain of unknown function (DUF4405) RecA PF00154.16 gi|557694125|ref|YP_008797179.1| - 9.8e-07 28.1 0.0 1.1e-06 27.9 0.0 1.2 1 0 0 1 1 1 1 recA bacterial DNA recombination protein AAA_25 PF13481.1 gi|557694125|ref|YP_008797179.1| - 1.6e-06 27.6 0.0 2.4e-06 27.0 0.0 1.3 1 0 0 1 1 1 1 AAA domain Rad51 PF08423.6 gi|557694125|ref|YP_008797179.1| - 1.6e-05 23.9 0.0 2.5e-05 23.2 0.0 1.2 1 0 0 1 1 1 1 Rad51 Arch_ATPase PF01637.13 gi|557694125|ref|YP_008797179.1| - 2e-05 24.3 0.0 5.3e-05 23.0 0.0 1.8 1 1 0 1 1 1 1 Archaeal ATPase AAA_16 PF13191.1 gi|557694125|ref|YP_008797179.1| - 0.00036 20.5 0.1 0.001 19.0 0.1 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|557694125|ref|YP_008797179.1| - 0.0088 16.1 0.0 0.018 15.1 0.0 1.5 1 1 0 1 1 1 1 AAA domain FtsK_SpoIIIE PF01580.13 gi|557694125|ref|YP_008797179.1| - 0.036 13.5 0.0 0.05 13.0 0.0 1.3 1 0 0 1 1 1 0 FtsK/SpoIIIE family AAA_10 PF12846.2 gi|557694125|ref|YP_008797179.1| - 0.054 12.9 0.0 0.089 12.2 0.0 1.3 1 1 0 1 1 1 0 AAA-like domain DAP3 PF10236.4 gi|557694125|ref|YP_008797179.1| - 0.068 12.0 0.0 0.093 11.6 0.0 1.2 1 0 0 1 1 1 0 Mitochondrial ribosomal death-associated protein 3 ASCH PF04266.9 gi|557694126|ref|YP_008797180.1| - 8.1e-10 39.0 0.0 9.5e-10 38.8 0.0 1.1 1 0 0 1 1 1 1 ASCH domain TPR_10 PF13374.1 gi|557694126|ref|YP_008797180.1| - 0.02 14.7 0.0 1.5 8.8 0.2 2.2 2 0 0 2 2 2 0 Tetratricopeptide repeat TusA PF01206.12 gi|557694127|ref|YP_008797181.1| - 5.6e-22 77.1 0.0 6.4e-22 76.9 0.0 1.0 1 0 0 1 1 1 1 Sulfurtransferase TusA DUF2249 PF10006.4 gi|557694127|ref|YP_008797181.1| - 0.072 12.6 0.0 0.17 11.5 0.0 1.5 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2249) DrsE_2 PF13686.1 gi|557694128|ref|YP_008797182.1| - 2.6e-28 98.6 0.5 7.3e-28 97.2 0.3 1.6 1 1 0 1 1 1 1 DsrE/DsrF/DrsH-like family DrsE PF02635.10 gi|557694128|ref|YP_008797182.1| - 4.2e-08 33.2 0.0 8.1e-08 32.3 0.0 1.4 1 1 0 1 1 1 1 DsrE/DsrF-like family EPSP_synthase PF00275.15 gi|557694128|ref|YP_008797182.1| - 0.06 11.7 0.0 0.079 11.3 0.0 1.1 1 0 0 1 1 1 0 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Apc4_WD40 PF12894.2 gi|557694128|ref|YP_008797182.1| - 0.069 12.6 0.0 0.15 11.6 0.0 1.6 1 0 0 1 1 1 0 Anaphase-promoting complex subunit 4 WD40 domain Polyketide_cyc2 PF10604.4 gi|557694130|ref|YP_008797184.1| - 4.2e-08 33.4 0.0 5.6e-08 33.0 0.0 1.2 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport Peptidase_M50 PF02163.17 gi|557694130|ref|YP_008797184.1| - 0.00024 20.1 4.0 0.0019 17.2 2.7 2.2 1 1 0 1 1 1 1 Peptidase family M50 Polyketide_cyc PF03364.15 gi|557694130|ref|YP_008797184.1| - 0.0017 18.3 0.0 0.0024 17.8 0.0 1.2 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport Peptidase_M50B PF13398.1 gi|557694130|ref|YP_008797184.1| - 1 8.7 9.2 8.7 5.6 6.4 2.1 1 1 0 1 1 1 0 Peptidase M50B-like Cas_DxTHG PF09455.5 gi|557694131|ref|YP_008797185.1| - 1.8e-14 53.7 1.8 2.1e-12 46.9 0.0 2.7 2 1 0 2 2 2 2 CRISPR-associated (Cas) DxTHG family DUF429 PF04250.8 gi|557694132|ref|YP_008797186.1| - 3e-25 88.7 0.0 3.9e-25 88.3 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF429) Glyoxalase PF00903.20 gi|557694133|ref|YP_008797187.1| - 4.9e-26 91.2 0.0 1.7e-14 53.9 0.0 2.1 2 0 0 2 2 2 2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_2 PF12681.2 gi|557694133|ref|YP_008797187.1| - 9.4e-15 55.1 0.0 9.1e-07 29.4 0.0 2.2 2 0 0 2 2 2 2 Glyoxalase-like domain CarboxypepD_reg PF13620.1 gi|557694134|ref|YP_008797188.1| - 2e-09 37.3 1.9 9e-09 35.2 0.5 2.0 2 0 0 2 2 2 1 Carboxypeptidase regulatory-like domain DUF4480 PF13715.1 gi|557694134|ref|YP_008797188.1| - 0.0017 18.3 0.1 0.0038 17.2 0.0 1.6 2 0 0 2 2 2 1 Domain of unknown function (DUF4480) UnbV_ASPIC PF07593.7 gi|557694134|ref|YP_008797188.1| - 0.047 13.3 0.2 0.073 12.7 0.1 1.3 1 0 0 1 1 1 0 ASPIC and UnbV UCR_Fe-S_N PF10399.4 gi|557694135|ref|YP_008797189.1| - 0.002 17.2 1.2 0.002 17.2 0.8 1.7 2 0 0 2 2 2 1 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal DUF1183 PF06682.7 gi|557694135|ref|YP_008797189.1| - 0.11 12.0 0.4 0.17 11.4 0.3 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1183) DUF1218 PF06749.7 gi|557694136|ref|YP_008797190.1| - 0.0021 18.4 3.5 0.0065 16.8 2.4 1.9 1 0 0 1 1 1 1 Protein of unknown function (DUF1218) MOZART2 PF12926.2 gi|557694136|ref|YP_008797190.1| - 0.084 12.4 0.1 0.16 11.5 0.1 1.4 1 0 0 1 1 1 0 Mitotic-spindle organizing gamma-tubulin ring associated DUF3989 PF13150.1 gi|557694136|ref|YP_008797190.1| - 0.29 10.6 0.1 0.29 10.6 0.1 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF3989) DUF3317 PF11779.3 gi|557694136|ref|YP_008797190.1| - 5.8 6.4 8.7 15 5.0 0.2 2.8 2 0 0 2 2 2 0 Protein of unknown function (DUF3317) ThiS PF02597.15 gi|557694137|ref|YP_008797191.1| - 2.7e-15 56.5 0.0 5.3e-15 55.6 0.0 1.5 1 0 0 1 1 1 1 ThiS family MraZ PF02381.13 gi|557694137|ref|YP_008797191.1| - 5.9e-08 32.3 0.1 0.0068 16.1 0.0 3.2 2 1 1 3 3 3 2 MraZ protein Urm1 PF09138.6 gi|557694137|ref|YP_008797191.1| - 1.8e-05 24.7 0.4 3.4e-05 23.8 0.0 1.6 2 0 0 2 2 2 1 Urm1 (Ubiquitin related modifier) Lambda_tail_I PF06805.7 gi|557694137|ref|YP_008797191.1| - 5.2e-05 22.9 0.0 9.7e-05 22.1 0.0 1.5 1 0 0 1 1 1 1 Bacteriophage lambda tail assembly protein I Arch_ATPase PF01637.13 gi|557694137|ref|YP_008797191.1| - 0.077 12.6 0.1 0.095 12.3 0.0 1.2 1 0 0 1 1 1 0 Archaeal ATPase Prok-JAB PF14464.1 gi|557694138|ref|YP_008797192.1| - 6.4e-19 67.4 0.0 7.4e-19 67.2 0.0 1.1 1 0 0 1 1 1 1 Prokaryotic homologs of the JAB domain JAB PF01398.16 gi|557694138|ref|YP_008797192.1| - 1.5e-09 37.5 0.0 2e-09 37.1 0.0 1.2 1 0 0 1 1 1 1 JAB1/Mov34/MPN/PAD-1 ubiquitin protease PALP PF00291.20 gi|557694139|ref|YP_008797193.1| - 2.2e-54 184.7 0.0 2.5e-54 184.5 0.0 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme HTH_10 PF04967.7 gi|557694141|ref|YP_008797195.1| - 1.1e-18 66.4 0.0 1.8e-18 65.8 0.0 1.3 1 0 0 1 1 1 1 HTH DNA binding domain Sigma70_r4 PF04545.11 gi|557694141|ref|YP_008797195.1| - 2e-11 43.0 0.0 4.2e-11 41.9 0.0 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 GerE PF00196.14 gi|557694141|ref|YP_008797195.1| - 2.1e-07 30.1 0.1 3.6e-06 26.2 0.0 2.1 2 0 0 2 2 2 1 Bacterial regulatory proteins, luxR family HTH_IclR PF09339.5 gi|557694141|ref|YP_008797195.1| - 4.3e-07 29.4 0.6 1.4e-06 27.7 0.1 2.0 2 0 0 2 2 1 1 IclR helix-turn-helix domain HTH_5 PF01022.15 gi|557694141|ref|YP_008797195.1| - 4.4e-06 26.2 0.1 2.1e-05 24.1 0.0 2.1 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.2 gi|557694141|ref|YP_008797195.1| - 1.2e-05 24.9 1.3 1.7e-05 24.3 0.1 1.9 2 1 0 2 2 1 1 MarR family HTH_20 PF12840.2 gi|557694141|ref|YP_008797195.1| - 1.4e-05 24.7 0.2 5.8e-05 22.8 0.2 2.1 1 1 0 1 1 1 1 Helix-turn-helix domain Sigma70_r4_2 PF08281.7 gi|557694141|ref|YP_008797195.1| - 4.9e-05 22.6 2.0 0.00021 20.6 0.3 2.4 2 1 0 2 2 2 1 Sigma-70, region 4 HTH_38 PF13936.1 gi|557694141|ref|YP_008797195.1| - 9.3e-05 21.9 0.3 0.00025 20.5 0.2 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|557694141|ref|YP_008797195.1| - 0.00013 21.2 0.4 0.00013 21.2 0.3 1.7 2 0 0 2 2 1 1 Winged helix-turn-helix DNA-binding Sigma70_ECF PF07638.6 gi|557694141|ref|YP_008797195.1| - 0.00067 19.3 0.0 0.0012 18.5 0.0 1.4 1 0 0 1 1 1 1 ECF sigma factor MarR PF01047.17 gi|557694141|ref|YP_008797195.1| - 0.0011 18.5 0.1 0.0043 16.7 0.0 2.0 2 0 0 2 2 2 1 MarR family HTH_23 PF13384.1 gi|557694141|ref|YP_008797195.1| - 0.0023 17.5 0.1 0.0067 16.0 0.1 1.8 1 0 0 1 1 1 1 Homeodomain-like domain HTH_11 PF08279.7 gi|557694141|ref|YP_008797195.1| - 0.0026 17.3 0.0 0.0064 16.1 0.0 1.6 1 0 0 1 1 1 1 HTH domain HTH_AsnC-type PF13404.1 gi|557694141|ref|YP_008797195.1| - 0.0054 16.2 0.7 0.011 15.2 0.1 1.7 2 0 0 2 2 1 1 AsnC-type helix-turn-helix domain HTH_27 PF13463.1 gi|557694141|ref|YP_008797195.1| - 0.0058 16.9 0.0 0.045 14.0 0.0 2.1 2 0 0 2 2 2 1 Winged helix DNA-binding domain TetR_N PF00440.18 gi|557694141|ref|YP_008797195.1| - 0.0088 15.6 0.0 0.018 14.6 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family LacI PF00356.16 gi|557694141|ref|YP_008797195.1| - 0.01 15.4 0.2 0.026 14.1 0.1 1.7 1 0 0 1 1 1 0 Bacterial regulatory proteins, lacI family HTH_Tnp_ISL3 PF13542.1 gi|557694141|ref|YP_008797195.1| - 0.013 14.6 0.2 0.026 13.6 0.2 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 HTH_40 PF14493.1 gi|557694141|ref|YP_008797195.1| - 0.019 15.1 0.0 0.043 14.0 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain Homeobox PF00046.24 gi|557694141|ref|YP_008797195.1| - 0.026 14.1 0.0 0.065 12.8 0.0 1.7 1 0 0 1 1 1 0 Homeobox domain HTH_28 PF13518.1 gi|557694141|ref|YP_008797195.1| - 0.027 14.4 0.1 0.079 12.9 0.1 1.8 2 0 0 2 2 1 0 Helix-turn-helix domain HTH_36 PF13730.1 gi|557694141|ref|YP_008797195.1| - 0.034 14.2 0.0 0.067 13.3 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain DUF3562 PF12085.3 gi|557694141|ref|YP_008797195.1| - 0.034 13.9 0.1 0.33 10.8 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3562) KorB PF08535.5 gi|557694141|ref|YP_008797195.1| - 0.048 13.8 0.0 0.13 12.4 0.0 1.7 1 0 0 1 1 1 0 KorB domain HTH_1 PF00126.22 gi|557694141|ref|YP_008797195.1| - 0.049 13.3 1.6 0.11 12.2 0.3 2.1 2 0 0 2 2 2 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_Tnp_4 PF13613.1 gi|557694141|ref|YP_008797195.1| - 0.059 12.9 0.1 0.16 11.5 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix of DDE superfamily endonuclease HTH_17 PF12728.2 gi|557694141|ref|YP_008797195.1| - 0.069 13.4 0.1 0.18 12.0 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_22 PF13309.1 gi|557694141|ref|YP_008797195.1| - 0.07 12.8 0.1 0.76 9.5 0.0 2.5 3 0 0 3 3 3 0 HTH domain Sigma54_DBD PF04552.8 gi|557694141|ref|YP_008797195.1| - 0.074 12.5 0.1 0.14 11.6 0.1 1.5 1 0 0 1 1 1 0 Sigma-54, DNA binding domain UPF0122 PF04297.9 gi|557694141|ref|YP_008797195.1| - 0.086 12.8 0.0 0.15 12.0 0.0 1.4 1 0 0 1 1 1 0 Putative helix-turn-helix protein, YlxM / p13 like HTH_3 PF01381.17 gi|557694141|ref|YP_008797195.1| - 0.092 12.6 0.1 0.19 11.6 0.1 1.5 1 0 0 1 1 1 0 Helix-turn-helix LexA_DNA_bind PF01726.11 gi|557694141|ref|YP_008797195.1| - 0.094 12.2 1.0 0.46 10.0 0.7 2.1 1 1 0 1 1 1 0 LexA DNA binding domain HTH_AraC PF00165.18 gi|557694141|ref|YP_008797195.1| - 0.11 12.3 0.2 0.77 9.6 0.0 2.2 1 1 1 2 2 2 0 Bacterial regulatory helix-turn-helix proteins, AraC family TrmB PF01978.14 gi|557694141|ref|YP_008797195.1| - 0.12 12.0 0.1 0.56 9.9 0.0 2.1 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB HTH_Tnp_Tc3_1 PF11427.3 gi|557694141|ref|YP_008797195.1| - 0.13 11.9 0.7 1.2 8.8 0.1 2.2 2 0 0 2 2 2 0 Tc3 transposase NUMOD1 PF07453.8 gi|557694141|ref|YP_008797195.1| - 0.14 12.0 0.1 1 9.3 0.0 2.1 2 0 0 2 2 2 0 NUMOD1 domain Cu-oxidase_3 PF07732.10 gi|557694142|ref|YP_008797196.1| - 2.7e-11 43.2 0.1 2.8e-09 36.7 0.0 2.7 2 0 0 2 2 2 1 Multicopper oxidase Cupredoxin_1 PF13473.1 gi|557694142|ref|YP_008797196.1| - 4.7e-11 42.5 0.0 2e-05 24.4 0.0 2.7 2 1 0 2 2 2 2 Cupredoxin-like domain Cu-oxidase_2 PF07731.9 gi|557694142|ref|YP_008797196.1| - 1.6e-09 37.3 0.1 2.6e-06 26.9 0.1 3.4 2 1 0 2 2 2 1 Multicopper oxidase Copper-bind PF00127.15 gi|557694142|ref|YP_008797196.1| - 3.7e-07 30.3 0.2 0.00091 19.4 0.0 2.8 2 0 0 2 2 2 2 Copper binding proteins, plastocyanin/azurin family SCO1-SenC PF02630.9 gi|557694143|ref|YP_008797197.1| - 2.6e-28 98.7 0.0 3.3e-28 98.4 0.0 1.1 1 0 0 1 1 1 1 SCO1/SenC Redoxin PF08534.5 gi|557694143|ref|YP_008797197.1| - 2.2e-07 30.5 0.0 2.7e-07 30.2 0.0 1.1 1 0 0 1 1 1 1 Redoxin AhpC-TSA PF00578.16 gi|557694143|ref|YP_008797197.1| - 3.7e-06 26.6 0.0 4.8e-06 26.2 0.0 1.2 1 0 0 1 1 1 1 AhpC/TSA family Thioredoxin_8 PF13905.1 gi|557694143|ref|YP_008797197.1| - 0.0011 19.0 0.0 0.0017 18.4 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin-like GSHPx PF00255.14 gi|557694143|ref|YP_008797197.1| - 0.045 13.1 0.0 0.16 11.3 0.0 1.7 2 0 0 2 2 2 0 Glutathione peroxidase NACHT PF05729.7 gi|557694143|ref|YP_008797197.1| - 0.048 13.3 0.0 0.085 12.5 0.0 1.4 1 0 0 1 1 1 0 NACHT domain PP2C_C PF07830.8 gi|557694143|ref|YP_008797197.1| - 0.12 12.4 0.0 0.21 11.7 0.0 1.4 1 0 0 1 1 1 0 Protein serine/threonine phosphatase 2C, C-terminal domain ABC2_membrane PF01061.19 gi|557694146|ref|YP_008797200.1| - 1.7e-09 37.1 17.5 1.7e-09 37.1 12.1 1.6 1 1 0 1 1 1 1 ABC-2 type transporter ABC2_membrane_3 PF12698.2 gi|557694146|ref|YP_008797200.1| - 5.3e-05 22.4 18.4 5.3e-05 22.4 12.8 1.5 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|557694146|ref|YP_008797200.1| - 7.6e-05 21.9 16.6 9.5e-05 21.6 11.5 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein DUF1469 PF07332.6 gi|557694146|ref|YP_008797200.1| - 5.3 6.8 18.9 2.5 7.8 0.1 2.8 3 0 0 3 3 3 0 Protein of unknown function (DUF1469) ABC_tran PF00005.22 gi|557694147|ref|YP_008797201.1| - 1.2e-24 87.1 0.0 2.5e-24 86.1 0.0 1.5 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|557694147|ref|YP_008797201.1| - 4.2e-16 59.7 0.2 2.1e-10 41.0 0.0 2.3 1 1 1 2 2 2 2 AAA domain AAA_29 PF13555.1 gi|557694147|ref|YP_008797201.1| - 3.3e-05 23.3 0.1 8e-05 22.0 0.1 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain Rad17 PF03215.10 gi|557694147|ref|YP_008797201.1| - 3.9e-05 22.5 0.0 5.6e-05 22.0 0.0 1.1 1 0 0 1 1 1 1 Rad17 cell cycle checkpoint protein DUF4162 PF13732.1 gi|557694147|ref|YP_008797201.1| - 0.003 18.0 0.1 0.0082 16.6 0.1 1.8 1 1 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_23 PF13476.1 gi|557694147|ref|YP_008797201.1| - 0.0031 17.8 0.0 0.0061 16.9 0.0 1.4 1 0 0 1 1 1 1 AAA domain SRP54 PF00448.17 gi|557694147|ref|YP_008797201.1| - 0.014 14.8 0.1 0.022 14.1 0.0 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_17 PF13207.1 gi|557694147|ref|YP_008797201.1| - 0.022 15.5 0.2 0.095 13.5 0.1 2.0 2 1 0 2 2 2 0 AAA domain MukB PF04310.7 gi|557694147|ref|YP_008797201.1| - 0.025 13.8 0.0 0.046 13.0 0.0 1.4 1 0 0 1 1 1 0 MukB N-terminal AAA_19 PF13245.1 gi|557694147|ref|YP_008797201.1| - 0.032 13.9 2.3 0.23 11.2 0.1 2.5 3 0 0 3 3 2 0 Part of AAA domain AAA_18 PF13238.1 gi|557694147|ref|YP_008797201.1| - 0.034 14.4 0.1 0.11 12.8 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_15 PF13175.1 gi|557694147|ref|YP_008797201.1| - 0.048 12.7 0.0 4.4 6.2 0.0 2.1 2 0 0 2 2 2 0 AAA ATPase domain AAA_22 PF13401.1 gi|557694147|ref|YP_008797201.1| - 0.072 13.2 0.1 1 9.5 0.0 2.4 2 1 0 2 2 2 0 AAA domain NTPase_1 PF03266.10 gi|557694147|ref|YP_008797201.1| - 0.085 12.5 0.1 6.8 6.3 0.0 2.8 3 0 0 3 3 3 0 NTPase AAA PF00004.24 gi|557694147|ref|YP_008797201.1| - 0.09 12.9 0.2 0.54 10.4 0.0 2.3 3 0 0 3 3 3 0 ATPase family associated with various cellular activities (AAA) UPF0079 PF02367.12 gi|557694147|ref|YP_008797201.1| - 0.11 12.0 0.1 0.25 10.9 0.0 1.5 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 MobB PF03205.9 gi|557694147|ref|YP_008797201.1| - 0.12 12.1 1.0 0.23 11.1 0.1 2.0 3 0 0 3 3 2 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_30 PF13604.1 gi|557694147|ref|YP_008797201.1| - 0.14 11.6 0.4 0.36 10.3 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_28 PF13521.1 gi|557694147|ref|YP_008797201.1| - 0.16 11.9 0.0 0.39 10.6 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.1 gi|557694147|ref|YP_008797201.1| - 0.16 11.9 0.1 0.58 10.1 0.0 1.8 2 0 0 2 2 2 0 AAA ATPase domain HTH_10 PF04967.7 gi|557694148|ref|YP_008797202.1| - 3.8e-17 61.5 0.0 5.9e-17 60.9 0.0 1.3 1 0 0 1 1 1 1 HTH DNA binding domain GHMP_kinases_C PF08544.8 gi|557694148|ref|YP_008797202.1| - 0.011 15.9 0.0 0.13 12.4 0.0 2.4 3 0 0 3 3 3 0 GHMP kinases C terminal HTH_24 PF13412.1 gi|557694148|ref|YP_008797202.1| - 0.055 12.8 0.0 0.11 11.8 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Cu-oxidase_3 PF07732.10 gi|557694149|ref|YP_008797203.1| - 1.1e-20 73.5 2.0 4.2e-15 55.5 0.7 2.4 2 1 0 2 2 2 2 Multicopper oxidase Cu-oxidase_2 PF07731.9 gi|557694149|ref|YP_008797203.1| - 1.6e-15 56.8 8.4 2.2e-09 36.9 0.7 3.2 2 2 0 2 2 2 2 Multicopper oxidase WW PF00397.21 gi|557694149|ref|YP_008797203.1| - 0.059 13.2 2.8 0.16 11.8 1.9 1.8 1 0 0 1 1 1 0 WW domain DsbD PF02683.10 gi|557694149|ref|YP_008797203.1| - 0.12 11.9 0.2 0.22 11.1 0.1 1.4 2 0 0 2 2 2 0 Cytochrome C biogenesis protein transmembrane region Cupredoxin_1 PF13473.1 gi|557694150|ref|YP_008797204.1| - 5.6e-10 39.0 0.0 7.4e-10 38.6 0.0 1.3 1 1 0 1 1 1 1 Cupredoxin-like domain Copper-bind PF00127.15 gi|557694150|ref|YP_008797204.1| - 5.7e-10 39.3 0.1 9.5e-08 32.1 0.0 2.2 1 1 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family DUF948 PF06103.6 gi|557694150|ref|YP_008797204.1| - 0.16 11.8 0.5 0.35 10.7 0.3 1.5 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF948) NosL PF05573.7 gi|557694151|ref|YP_008797205.1| - 9.4e-12 44.8 0.0 1.7e-11 43.9 0.0 1.3 1 0 0 1 1 1 1 NosL AhpC-TSA PF00578.16 gi|557694151|ref|YP_008797205.1| - 7.1e-11 41.8 0.0 1.4e-10 40.9 0.0 1.5 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.5 gi|557694151|ref|YP_008797205.1| - 2e-10 40.4 0.1 4.1e-10 39.3 0.0 1.5 1 1 0 1 1 1 1 Redoxin Thioredoxin_8 PF13905.1 gi|557694151|ref|YP_008797205.1| - 4.3e-06 26.7 0.0 6.6e-06 26.1 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin-like Thioredoxin_7 PF13899.1 gi|557694151|ref|YP_008797205.1| - 4.6e-06 26.5 0.0 9.9e-06 25.4 0.0 1.5 1 0 0 1 1 1 1 Thioredoxin-like Thioredoxin_2 PF13098.1 gi|557694151|ref|YP_008797205.1| - 5.9e-05 23.2 0.0 0.0001 22.4 0.0 1.4 1 0 0 1 1 1 1 Thioredoxin-like domain Thioredoxin PF00085.15 gi|557694151|ref|YP_008797205.1| - 0.0003 20.4 0.0 0.00055 19.5 0.0 1.4 1 0 0 1 1 1 1 Thioredoxin SCO1-SenC PF02630.9 gi|557694151|ref|YP_008797205.1| - 0.0019 17.8 0.0 0.0032 17.1 0.0 1.3 1 0 0 1 1 1 1 SCO1/SenC IBP39 PF11422.3 gi|557694151|ref|YP_008797205.1| - 0.07 12.6 0.0 0.12 11.9 0.0 1.3 1 0 0 1 1 1 0 Initiator binding protein 39 kDa TrmB PF01978.14 gi|557694152|ref|YP_008797206.1| - 3.2e-05 23.5 0.4 5.1e-05 22.8 0.3 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|557694152|ref|YP_008797206.1| - 7.7e-05 22.2 1.6 0.00012 21.6 1.1 1.3 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.5 gi|557694152|ref|YP_008797206.1| - 0.00038 19.9 0.1 0.00063 19.2 0.1 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_24 PF13412.1 gi|557694152|ref|YP_008797206.1| - 0.00079 18.7 0.3 0.0011 18.3 0.2 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_Crp_2 PF13545.1 gi|557694152|ref|YP_008797206.1| - 0.0012 18.5 0.4 0.002 17.8 0.3 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain AA_permease PF00324.16 gi|557694152|ref|YP_008797206.1| - 0.0073 14.6 1.8 0.0093 14.3 1.3 1.0 1 0 0 1 1 1 1 Amino acid permease HTH_27 PF13463.1 gi|557694152|ref|YP_008797206.1| - 0.013 15.7 0.5 0.021 15.1 0.4 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain Rrf2 PF02082.15 gi|557694152|ref|YP_008797206.1| - 0.036 14.1 0.2 0.066 13.3 0.2 1.4 1 0 0 1 1 1 0 Transcriptional regulator DctQ PF04290.7 gi|557694152|ref|YP_008797206.1| - 0.051 13.3 9.7 0.071 12.8 6.8 1.2 1 0 0 1 1 1 0 Tripartite ATP-independent periplasmic transporters, DctQ component Sigma70_r4 PF04545.11 gi|557694152|ref|YP_008797206.1| - 0.12 11.6 1.1 0.21 10.9 0.7 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 Yip1 PF04893.12 gi|557694152|ref|YP_008797206.1| - 0.15 11.5 6.7 0.19 11.2 4.7 1.2 1 0 0 1 1 1 0 Yip1 domain PepSY PF03413.14 gi|557694153|ref|YP_008797207.1| - 0.0088 16.6 0.0 6 7.5 0.0 2.5 2 0 0 2 2 2 2 Peptidase propeptide and YPEB domain DUF4064 PF13273.1 gi|557694154|ref|YP_008797208.1| - 2.4e-05 24.3 9.8 2.4e-05 24.3 6.8 2.6 2 1 0 2 2 2 1 Protein of unknown function (DUF4064) SpoIIIAC PF06686.6 gi|557694154|ref|YP_008797208.1| - 0.051 13.3 6.9 0.28 11.0 0.1 2.7 2 1 1 3 3 3 0 Stage III sporulation protein AC/AD protein family Trp_oprn_chp PF09534.5 gi|557694154|ref|YP_008797208.1| - 5.4 6.5 8.8 3.1 7.3 0.7 2.3 2 1 0 2 2 2 0 Tryptophan-associated transmembrane protein (Trp_oprn_chp) DUF411 PF04214.8 gi|557694155|ref|YP_008797209.1| - 3.5e-26 90.5 0.1 4.9e-26 90.0 0.1 1.2 1 0 0 1 1 1 1 Protein of unknown function, DUF Glutaredoxin PF00462.19 gi|557694155|ref|YP_008797209.1| - 0.00028 20.7 0.1 0.00055 19.8 0.1 1.5 1 0 0 1 1 1 1 Glutaredoxin DUF836 PF05768.9 gi|557694155|ref|YP_008797209.1| - 0.075 13.2 0.1 0.12 12.6 0.1 1.4 1 0 0 1 1 1 0 Glutaredoxin-like domain (DUF836) CTI PF06934.6 gi|557694155|ref|YP_008797209.1| - 0.083 11.1 0.0 0.1 10.8 0.0 1.1 1 0 0 1 1 1 0 Fatty acid cis/trans isomerase (CTI) HTH_24 PF13412.1 gi|557694156|ref|YP_008797210.1| - 0.016 14.5 0.0 0.032 13.6 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_20 PF12840.2 gi|557694156|ref|YP_008797210.1| - 0.09 12.5 0.0 0.25 11.1 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_45 PF14947.1 gi|557694156|ref|YP_008797210.1| - 0.11 12.3 0.5 0.24 11.2 0.3 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix OAD_gamma PF04277.8 gi|557694157|ref|YP_008797211.1| - 0.82 10.0 5.0 3.7 7.9 3.5 1.9 1 1 0 1 1 1 0 Oxaloacetate decarboxylase, gamma chain FAP PF07174.6 gi|557694157|ref|YP_008797211.1| - 8.2 5.6 14.5 10 5.3 10.1 1.0 1 0 0 1 1 1 0 Fibronectin-attachment protein (FAP) Uso1_p115_C PF04871.8 gi|557694158|ref|YP_008797212.1| - 0.22 11.4 4.0 0.49 10.3 2.8 1.6 1 0 0 1 1 1 0 Uso1 / p115 like vesicle tethering protein, C terminal region TMPIT PF07851.8 gi|557694158|ref|YP_008797212.1| - 4.8 6.1 8.0 0.12 11.3 1.2 1.4 2 0 0 2 2 2 0 TMPIT-like protein SprT-like PF10263.4 gi|557694160|ref|YP_008797214.1| - 0.03 13.9 0.0 0.035 13.7 0.0 1.2 1 0 0 1 1 1 0 SprT-like family DUF45 PF01863.12 gi|557694160|ref|YP_008797214.1| - 0.16 11.7 0.1 0.6 9.8 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function DUF45 LAGLIDADG_3 PF14528.1 gi|557694161|ref|YP_008797215.1| - 2e-17 63.1 0.1 1.3e-14 54.2 0.1 2.5 2 0 0 2 2 2 2 LAGLIDADG-like domain Hom_end PF05204.9 gi|557694161|ref|YP_008797215.1| - 0.016 15.1 0.0 0.053 13.4 0.0 1.8 3 0 0 3 3 3 0 Homing endonuclease Auto_anti-p27 PF06677.7 gi|557694162|ref|YP_008797216.1| - 2.8e-11 42.9 0.8 6e-11 41.9 0.3 1.7 2 0 0 2 2 2 1 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) DNA_ligase_ZBD PF03119.11 gi|557694162|ref|YP_008797216.1| - 0.039 13.6 6.6 0.35 10.5 2.2 2.4 1 1 1 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain Rad50_zn_hook PF04423.9 gi|557694162|ref|YP_008797216.1| - 0.078 12.4 0.2 0.22 11.0 0.0 1.8 2 0 0 2 2 2 0 Rad50 zinc hook motif zf-C2HC5 PF06221.8 gi|557694162|ref|YP_008797216.1| - 0.092 12.5 0.8 6.1 6.6 0.0 2.2 1 1 1 2 2 2 0 Putative zinc finger motif, C2HC5-type zinc-ribbons_6 PF07191.7 gi|557694162|ref|YP_008797216.1| - 0.12 12.1 0.2 0.19 11.5 0.2 1.3 1 0 0 1 1 1 0 zinc-ribbons GFA PF04828.9 gi|557694162|ref|YP_008797216.1| - 0.13 12.1 0.1 2.3 8.2 0.0 2.3 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme zf-FPG_IleRS PF06827.9 gi|557694162|ref|YP_008797216.1| - 0.5 10.0 2.8 11 5.7 0.4 2.3 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS Cdc6_C PF09079.6 gi|557694163|ref|YP_008797217.1| - 2.9e-20 71.7 0.4 1.9e-19 69.1 0.1 2.4 3 1 1 4 4 4 1 CDC6, C terminal AAA_22 PF13401.1 gi|557694163|ref|YP_008797217.1| - 4.2e-12 46.3 0.0 9.2e-12 45.2 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA PF00004.24 gi|557694163|ref|YP_008797217.1| - 1.9e-08 34.5 0.0 3.9e-08 33.5 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.1 gi|557694163|ref|YP_008797217.1| - 2e-07 31.1 0.8 1.1e-05 25.4 0.0 3.1 2 1 0 2 2 2 1 AAA ATPase domain Sigma54_activat PF00158.21 gi|557694163|ref|YP_008797217.1| - 5.4e-05 22.7 0.0 9.1e-05 21.9 0.0 1.3 1 0 0 1 1 1 1 Sigma-54 interaction domain Arch_ATPase PF01637.13 gi|557694163|ref|YP_008797217.1| - 0.0064 16.2 0.0 0.025 14.2 0.0 2.0 2 1 0 2 2 2 1 Archaeal ATPase NB-ARC PF00931.17 gi|557694163|ref|YP_008797217.1| - 0.016 14.1 0.0 0.021 13.6 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain AAA_5 PF07728.9 gi|557694163|ref|YP_008797217.1| - 0.023 14.4 0.0 0.12 12.1 0.0 2.2 2 1 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_32 PF13654.1 gi|557694163|ref|YP_008797217.1| - 0.025 13.2 1.3 2.4 6.7 0.0 2.1 2 0 0 2 2 2 0 AAA domain ORC5_C PF14630.1 gi|557694163|ref|YP_008797217.1| - 0.033 13.6 0.0 0.7 9.3 0.0 2.1 1 1 0 2 2 2 0 Origin recognition complex (ORC) subunit 5 C-terminus PIF1 PF05970.9 gi|557694163|ref|YP_008797217.1| - 0.046 12.6 0.0 0.066 12.1 0.0 1.3 1 0 0 1 1 1 0 PIF1-like helicase AAA_24 PF13479.1 gi|557694163|ref|YP_008797217.1| - 0.062 12.8 0.1 0.1 12.1 0.0 1.3 1 0 0 1 1 1 0 AAA domain DUF2075 PF09848.4 gi|557694163|ref|YP_008797217.1| - 0.072 12.0 0.0 0.091 11.7 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) RNA_helicase PF00910.17 gi|557694163|ref|YP_008797217.1| - 0.09 12.9 0.0 0.17 12.0 0.0 1.4 1 0 0 1 1 1 0 RNA helicase DEAD PF00270.24 gi|557694163|ref|YP_008797217.1| - 0.16 11.4 0.1 4.2 6.8 0.0 2.2 1 1 0 2 2 2 0 DEAD/DEAH box helicase Pox_D5 PF03288.11 gi|557694163|ref|YP_008797217.1| - 0.17 12.1 0.0 0.39 10.9 0.0 1.6 1 0 0 1 1 1 0 Poxvirus D5 protein-like Endonuclease_5 PF04493.9 gi|557694164|ref|YP_008797218.1| - 7.6e-40 136.4 0.0 9.2e-40 136.1 0.0 1.1 1 0 0 1 1 1 1 Endonuclease V DUF99 PF01949.11 gi|557694164|ref|YP_008797218.1| - 0.025 13.6 0.0 0.068 12.2 0.0 1.6 2 0 0 2 2 2 0 Protein of unknown function DUF99 Methyltransf_11 PF08241.7 gi|557694165|ref|YP_008797219.1| - 7e-14 52.0 0.0 1.1e-13 51.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|557694165|ref|YP_008797219.1| - 5.6e-12 45.9 0.2 1e-11 45.0 0.2 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|557694165|ref|YP_008797219.1| - 6.5e-08 32.2 0.0 9e-08 31.8 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|557694165|ref|YP_008797219.1| - 1.1e-07 32.2 0.0 1.9e-07 31.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|557694165|ref|YP_008797219.1| - 2.9e-07 30.3 0.0 3.4e-07 30.1 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|557694165|ref|YP_008797219.1| - 0.00011 22.7 0.0 0.00016 22.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain MetW PF07021.7 gi|557694165|ref|YP_008797219.1| - 0.0026 17.1 0.0 0.0032 16.8 0.0 1.1 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_26 PF13659.1 gi|557694165|ref|YP_008797219.1| - 0.0036 17.3 0.1 0.005 16.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_32 PF13679.1 gi|557694165|ref|YP_008797219.1| - 0.053 13.2 0.0 0.065 12.9 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain NTP_transf_2 PF01909.18 gi|557694166|ref|YP_008797220.1| - 2.4e-06 27.7 0.0 4.6e-06 26.8 0.0 1.5 1 0 0 1 1 1 1 Nucleotidyltransferase domain DUF294 PF03445.8 gi|557694166|ref|YP_008797220.1| - 0.0036 16.9 0.0 0.0063 16.1 0.0 1.3 1 0 0 1 1 1 1 Putative nucleotidyltransferase DUF294 IMPDH PF00478.20 gi|557694167|ref|YP_008797221.1| - 8.1e-138 459.1 4.4 9.5e-138 458.8 3.1 1.0 1 0 0 1 1 1 1 IMP dehydrogenase / GMP reductase domain CBS PF00571.23 gi|557694167|ref|YP_008797221.1| - 3.8e-25 87.3 0.0 8.6e-12 44.6 0.0 2.8 2 0 0 2 2 2 2 CBS domain NMO PF03060.10 gi|557694167|ref|YP_008797221.1| - 1.8e-14 53.6 6.7 1.8e-06 27.3 0.3 3.1 3 0 0 3 3 3 3 Nitronate monooxygenase FMN_dh PF01070.13 gi|557694167|ref|YP_008797221.1| - 2e-11 43.3 4.9 1.5e-10 40.4 1.7 2.9 3 0 0 3 3 3 1 FMN-dependent dehydrogenase DHO_dh PF01180.16 gi|557694167|ref|YP_008797221.1| - 2.8e-05 23.2 4.4 0.00061 18.8 0.7 2.4 1 1 1 2 2 2 2 Dihydroorotate dehydrogenase His_biosynth PF00977.16 gi|557694167|ref|YP_008797221.1| - 4.2e-05 22.9 6.0 0.00021 20.6 0.1 2.7 2 1 0 3 3 3 1 Histidine biosynthesis protein PEP_mutase PF13714.1 gi|557694167|ref|YP_008797221.1| - 6.3e-05 22.3 2.7 9.2e-05 21.7 0.7 2.1 1 1 0 1 1 1 1 Phosphoenolpyruvate phosphomutase Glu_synthase PF01645.12 gi|557694167|ref|YP_008797221.1| - 0.0022 16.9 5.7 0.0045 15.9 3.8 1.7 1 1 0 1 1 1 1 Conserved region in glutamate synthase Dus PF01207.12 gi|557694167|ref|YP_008797221.1| - 0.0043 15.9 0.5 0.012 14.4 0.0 1.9 2 0 0 2 2 2 1 Dihydrouridine synthase (Dus) ThiG PF05690.9 gi|557694167|ref|YP_008797221.1| - 0.026 13.5 6.7 0.021 13.8 1.6 2.6 2 1 1 3 3 3 0 Thiazole biosynthesis protein ThiG Aldolase PF01081.14 gi|557694167|ref|YP_008797221.1| - 0.46 9.6 7.2 0.13 11.4 2.1 2.2 2 1 0 2 2 2 0 KDPG and KHG aldolase Adenylsucc_synt PF00709.16 gi|557694168|ref|YP_008797222.1| - 2e-132 441.8 0.0 6.1e-132 440.2 0.0 1.6 1 1 0 1 1 1 1 Adenylosuccinate synthetase Lyase_1 PF00206.15 gi|557694169|ref|YP_008797223.1| - 3.5e-35 121.6 0.0 5.2e-35 121.1 0.0 1.2 1 0 0 1 1 1 1 Lyase ASL_C PF08328.6 gi|557694169|ref|YP_008797223.1| - 5.9e-14 51.8 0.0 1.5e-13 50.5 0.0 1.7 1 0 0 1 1 1 1 Adenylosuccinate lyase C-terminal PmbA_TldD PF01523.11 gi|557694170|ref|YP_008797224.1| - 8.2e-53 179.5 0.3 1e-52 179.2 0.2 1.1 1 0 0 1 1 1 1 Putative modulator of DNA gyrase APH PF01636.18 gi|557694171|ref|YP_008797225.1| - 5.4e-08 32.8 0.0 1.1e-06 28.5 0.0 2.2 1 1 1 2 2 2 2 Phosphotransferase enzyme family Kdo PF06293.9 gi|557694171|ref|YP_008797225.1| - 0.00082 18.5 0.0 0.0028 16.7 0.0 1.8 2 0 0 2 2 2 1 Lipopolysaccharide kinase (Kdo/WaaP) family NTP_transf_2 PF01909.18 gi|557694172|ref|YP_008797226.1| - 0.03 14.6 0.0 0.064 13.5 0.0 1.6 1 0 0 1 1 1 0 Nucleotidyltransferase domain NeuB PF03102.9 gi|557694172|ref|YP_008797226.1| - 0.037 13.1 0.0 0.063 12.4 0.0 1.3 1 0 0 1 1 1 0 NeuB family NB-ARC PF00931.17 gi|557694172|ref|YP_008797226.1| - 0.094 11.5 0.1 0.19 10.5 0.1 1.5 1 1 0 1 1 1 0 NB-ARC domain NTP_transf_2 PF01909.18 gi|557694173|ref|YP_008797227.1| - 2e-05 24.8 0.0 3.4e-05 24.0 0.0 1.4 1 0 0 1 1 1 1 Nucleotidyltransferase domain POR PF01558.13 gi|557694174|ref|YP_008797228.1| - 7.1e-31 107.4 0.0 9.2e-31 107.0 0.0 1.0 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase Fer4 PF00037.22 gi|557694175|ref|YP_008797229.1| - 9.2e-11 40.8 21.0 1.8e-05 24.1 5.8 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|557694175|ref|YP_008797229.1| - 2.5e-08 33.6 23.7 7.7e-07 28.8 10.1 1.5 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|557694175|ref|YP_008797229.1| - 4.9e-08 33.2 39.4 9.8e-06 25.8 10.4 1.8 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|557694175|ref|YP_008797229.1| - 1.5e-07 30.9 17.0 0.00012 21.7 3.1 2.5 2 1 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|557694175|ref|YP_008797229.1| - 9e-07 28.5 14.1 1.6e-06 27.8 9.8 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|557694175|ref|YP_008797229.1| - 1.6e-05 25.5 11.7 0.033 14.9 4.8 2.2 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_9 PF13187.1 gi|557694175|ref|YP_008797229.1| - 1.9e-05 24.8 15.3 2.7e-05 24.3 10.6 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|557694175|ref|YP_008797229.1| - 4.3e-05 23.2 18.1 0.016 15.0 2.5 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_15 PF13459.1 gi|557694175|ref|YP_008797229.1| - 0.0072 16.8 11.9 0.065 13.8 3.5 2.4 2 1 0 2 2 2 2 4Fe-4S single cluster domain Fer4_11 PF13247.1 gi|557694175|ref|YP_008797229.1| - 0.0092 15.8 8.1 0.011 15.5 5.6 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|557694175|ref|YP_008797229.1| - 0.035 14.4 16.4 0.29 11.5 2.1 2.4 1 1 1 2 2 2 0 4Fe-4S binding domain Fer4_17 PF13534.1 gi|557694175|ref|YP_008797229.1| - 0.048 14.0 14.5 0.64 10.3 0.8 2.2 1 1 0 2 2 2 0 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|557694175|ref|YP_008797229.1| - 0.11 12.4 14.7 1.3 9.1 1.3 2.1 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|557694175|ref|YP_008797229.1| - 0.28 11.6 14.5 0.49 10.8 1.8 2.5 1 1 1 2 2 2 0 4Fe-4S single cluster domain Fer4_18 PF13746.1 gi|557694175|ref|YP_008797229.1| - 0.37 11.2 10.4 5.2 7.5 0.2 2.2 2 0 0 2 2 2 0 4Fe-4S dicluster domain Sar8_2 PF03058.9 gi|557694175|ref|YP_008797229.1| - 4.4 7.6 7.1 65 3.9 4.9 2.0 1 1 0 1 1 1 0 Sar8.2 family POR_N PF01855.14 gi|557694176|ref|YP_008797230.1| - 1.4e-70 237.3 1.3 1.8e-70 237.0 0.9 1.1 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg TPP_enzyme_N PF02776.13 gi|557694176|ref|YP_008797230.1| - 0.0021 17.5 1.2 0.0036 16.7 0.8 1.3 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.16 gi|557694177|ref|YP_008797231.1| - 2.1e-27 95.5 0.0 2.8e-27 95.1 0.0 1.2 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Cupin_2 PF07883.6 gi|557694178|ref|YP_008797232.1| - 1.1e-21 76.0 0.4 1.4e-21 75.7 0.3 1.2 1 0 0 1 1 1 1 Cupin domain Cupin_1 PF00190.17 gi|557694178|ref|YP_008797232.1| - 1.2e-10 40.9 0.0 1.6e-10 40.5 0.0 1.2 1 0 0 1 1 1 1 Cupin AraC_binding PF02311.14 gi|557694178|ref|YP_008797232.1| - 9e-09 35.1 0.1 1.1e-08 34.8 0.1 1.2 1 0 0 1 1 1 1 AraC-like ligand binding domain MannoseP_isomer PF01050.13 gi|557694178|ref|YP_008797232.1| - 4e-06 26.5 0.0 4.7e-06 26.3 0.0 1.2 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase Cupin_3 PF05899.7 gi|557694178|ref|YP_008797232.1| - 6.7e-05 22.1 0.1 0.0001 21.6 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF861) EutQ PF06249.7 gi|557694178|ref|YP_008797232.1| - 0.00021 20.8 0.0 0.00033 20.2 0.0 1.3 1 0 0 1 1 1 1 Ethanolamine utilisation protein EutQ Pirin PF02678.11 gi|557694178|ref|YP_008797232.1| - 0.0022 17.8 0.0 0.0026 17.6 0.0 1.2 1 0 0 1 1 1 1 Pirin CENP-C_C PF11699.3 gi|557694178|ref|YP_008797232.1| - 0.0023 17.8 0.0 0.0035 17.2 0.0 1.4 1 0 0 1 1 1 1 Mif2/CENP-C like DUF1637 PF07847.7 gi|557694178|ref|YP_008797232.1| - 0.0064 15.8 0.0 0.029 13.7 0.0 1.7 1 1 1 2 2 2 1 Protein of unknown function (DUF1637) Auxin_BP PF02041.11 gi|557694178|ref|YP_008797232.1| - 0.011 15.1 0.0 0.069 12.5 0.0 1.9 1 1 0 1 1 1 0 Auxin binding protein Cupin_7 PF12973.2 gi|557694178|ref|YP_008797232.1| - 0.022 14.5 0.0 0.033 14.0 0.0 1.4 1 1 0 1 1 1 0 ChrR Cupin-like domain Cupin_6 PF12852.2 gi|557694178|ref|YP_008797232.1| - 0.057 13.0 0.0 0.068 12.7 0.0 1.2 1 0 0 1 1 1 0 Cupin Cupin_8 PF13621.1 gi|557694178|ref|YP_008797232.1| - 0.063 12.7 0.0 0.063 12.7 0.0 1.2 1 0 0 1 1 1 0 Cupin-like domain JmjC PF02373.17 gi|557694178|ref|YP_008797232.1| - 0.14 12.4 0.0 0.21 11.8 0.0 1.3 1 0 0 1 1 1 0 JmjC domain, hydroxylase HTH_27 PF13463.1 gi|557694180|ref|YP_008797234.1| - 9.2e-08 32.2 0.0 1.8e-07 31.3 0.0 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain TrmB PF01978.14 gi|557694180|ref|YP_008797234.1| - 7.1e-06 25.6 0.1 1.2e-05 24.9 0.1 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.17 gi|557694180|ref|YP_008797234.1| - 1.4e-05 24.6 0.0 2.3e-05 24.0 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.5 gi|557694180|ref|YP_008797234.1| - 1.9e-05 24.1 0.3 3.8e-05 23.1 0.2 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.2 gi|557694180|ref|YP_008797234.1| - 6e-05 22.6 0.3 0.00015 21.3 0.1 1.7 2 0 0 2 2 2 1 MarR family HTH_45 PF14947.1 gi|557694180|ref|YP_008797234.1| - 9.7e-05 22.1 0.0 0.00015 21.5 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix Rrf2 PF02082.15 gi|557694180|ref|YP_008797234.1| - 0.00057 19.9 0.0 0.001 19.1 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulator HTH_24 PF13412.1 gi|557694180|ref|YP_008797234.1| - 0.0025 17.1 0.1 0.0044 16.3 0.1 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_12 PF08461.5 gi|557694180|ref|YP_008797234.1| - 0.0095 15.6 0.3 0.023 14.3 0.2 1.7 1 1 0 1 1 1 1 Ribonuclease R winged-helix domain Fe_dep_repress PF01325.14 gi|557694180|ref|YP_008797234.1| - 0.011 15.6 0.0 0.023 14.6 0.0 1.5 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain S10_plectin PF03501.10 gi|557694180|ref|YP_008797234.1| - 0.016 15.0 0.0 0.03 14.1 0.0 1.6 2 0 0 2 2 2 0 Plectin/S10 domain GPP34 PF05719.6 gi|557694180|ref|YP_008797234.1| - 0.028 14.4 0.3 0.036 14.1 0.2 1.2 1 0 0 1 1 1 0 Golgi phosphoprotein 3 (GPP34) FeoC PF09012.5 gi|557694180|ref|YP_008797234.1| - 0.032 13.9 0.0 0.053 13.2 0.0 1.3 1 0 0 1 1 1 0 FeoC like transcriptional regulator HTH_Crp_2 PF13545.1 gi|557694180|ref|YP_008797234.1| - 0.033 13.9 0.0 0.065 13.0 0.0 1.5 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain ANT PF03374.9 gi|557694180|ref|YP_008797234.1| - 0.039 14.0 0.1 0.081 12.9 0.0 1.6 1 1 1 2 2 2 0 Phage antirepressor protein KilAC domain HTH_5 PF01022.15 gi|557694180|ref|YP_008797234.1| - 0.042 13.5 0.3 0.063 12.9 0.2 1.3 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family TFIIE_alpha PF02002.12 gi|557694180|ref|YP_008797234.1| - 0.063 12.7 0.1 0.11 12.0 0.0 1.4 1 0 0 1 1 1 0 TFIIE alpha subunit Penicillinase_R PF03965.11 gi|557694180|ref|YP_008797234.1| - 0.066 13.3 0.2 0.37 10.8 0.0 2.0 2 0 0 2 2 2 0 Penicillinase repressor HTH_20 PF12840.2 gi|557694180|ref|YP_008797234.1| - 0.14 11.9 0.6 0.23 11.3 0.4 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain Transp_cyt_pur PF02133.10 gi|557694181|ref|YP_008797235.1| - 1.5e-27 96.2 37.4 1.8e-27 95.9 25.9 1.0 1 0 0 1 1 1 1 Permease for cytosine/purines, uracil, thiamine, allantoin DNA_primase_lrg PF04104.9 gi|557694182|ref|YP_008797236.1| - 5.1e-25 88.2 0.2 1e-24 87.2 0.1 1.5 1 1 0 1 1 1 1 Eukaryotic and archaeal DNA primase, large subunit Methyltransf_26 PF13659.1 gi|557694183|ref|YP_008797237.1| - 1.7e-14 53.8 0.0 7.8e-14 51.7 0.0 2.1 2 1 0 2 2 2 1 Methyltransferase domain Eco57I PF07669.6 gi|557694183|ref|YP_008797237.1| - 1.7e-07 31.5 0.0 4.8e-07 30.0 0.0 1.7 1 0 0 1 1 1 1 Eco57I restriction-modification methylase N6_Mtase PF02384.11 gi|557694183|ref|YP_008797237.1| - 3e-07 29.8 0.0 0.084 11.9 0.0 3.2 3 0 0 3 3 3 2 N-6 DNA Methylase TaqI_C PF12950.2 gi|557694183|ref|YP_008797237.1| - 0.049 13.3 0.1 0.21 11.3 0.0 2.1 2 0 0 2 2 2 0 TaqI-like C-terminal specificity domain UPF0020 PF01170.13 gi|557694183|ref|YP_008797237.1| - 0.067 12.7 0.0 2.7 7.5 0.0 2.4 2 0 0 2 2 2 0 Putative RNA methylase family UPF0020 SNF2_N PF00176.18 gi|557694184|ref|YP_008797238.1| - 2.2e-17 62.8 6.7 2.4e-09 36.4 0.3 3.1 2 1 1 3 3 3 2 SNF2 family N-terminal domain PLDc_2 PF13091.1 gi|557694184|ref|YP_008797238.1| - 3.1e-16 59.2 0.3 4e-15 55.6 0.0 2.9 3 0 0 3 3 3 1 PLD-like domain Helicase_C PF00271.26 gi|557694184|ref|YP_008797238.1| - 6.1e-13 48.4 0.1 2.4e-12 46.5 0.0 2.1 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|557694184|ref|YP_008797238.1| - 6.4e-12 45.6 4.3 1.2e-05 25.2 0.1 3.6 2 2 1 3 3 3 2 Type III restriction enzyme, res subunit AAA_22 PF13401.1 gi|557694184|ref|YP_008797238.1| - 3.4e-07 30.4 0.1 2.2e-06 27.8 0.0 2.5 1 0 0 1 1 1 1 AAA domain DEAD PF00270.24 gi|557694184|ref|YP_008797238.1| - 4.7e-06 26.1 0.4 0.0011 18.4 0.3 2.7 1 1 0 1 1 1 1 DEAD/DEAH box helicase AAA_30 PF13604.1 gi|557694184|ref|YP_008797238.1| - 0.00024 20.7 0.0 0.00058 19.4 0.0 1.6 1 0 0 1 1 1 1 AAA domain Flavi_DEAD PF07652.9 gi|557694184|ref|YP_008797238.1| - 0.0015 18.3 0.1 0.0052 16.5 0.1 1.9 1 1 0 1 1 1 1 Flavivirus DEAD domain DUF2075 PF09848.4 gi|557694184|ref|YP_008797238.1| - 0.0018 17.3 0.4 0.01 14.8 0.0 2.4 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2075) IstB_IS21 PF01695.12 gi|557694184|ref|YP_008797238.1| - 0.0061 15.9 1.9 0.39 10.1 0.2 2.9 2 1 0 2 2 2 1 IstB-like ATP binding protein DUF4393 PF14337.1 gi|557694184|ref|YP_008797238.1| - 0.02 14.3 0.2 0.02 14.3 0.1 3.3 4 0 0 4 4 4 0 Domain of unknown function (DUF4393) CbiA PF01656.18 gi|557694184|ref|YP_008797238.1| - 0.02 14.2 0.5 0.061 12.7 0.0 2.1 2 0 0 2 2 2 0 CobQ/CobB/MinD/ParA nucleotide binding domain AAA PF00004.24 gi|557694184|ref|YP_008797238.1| - 0.022 14.9 0.8 0.21 11.7 0.0 3.0 3 0 0 3 3 3 0 ATPase family associated with various cellular activities (AAA) AAA_26 PF13500.1 gi|557694184|ref|YP_008797238.1| - 0.07 12.7 0.2 0.84 9.2 0.2 2.7 1 1 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|557694184|ref|YP_008797238.1| - 1.4 8.2 7.0 7.6 5.8 0.1 4.4 3 2 0 3 3 3 0 AAA-like domain DUF2096 PF09869.4 gi|557694185|ref|YP_008797239.1| - 0.0074 16.1 0.0 0.015 15.1 0.0 1.5 1 1 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2096) Cas_APE2256 PF09651.5 gi|557694186|ref|YP_008797240.1| - 4.9e-30 104.0 0.4 1.1e-29 102.8 0.1 1.7 2 0 0 2 2 2 1 CRISPR-associated protein (Cas_APE2256) DUF3734 PF12536.3 gi|557694186|ref|YP_008797240.1| - 0.0044 17.1 1.0 0.21 11.7 0.1 2.4 1 1 1 2 2 2 2 Patatin phospholipase Rep_2 PF01719.12 gi|557694186|ref|YP_008797240.1| - 0.0087 15.5 0.2 0.018 14.5 0.2 1.5 1 0 0 1 1 1 1 Plasmid replication protein Cas_Cas02710 PF09670.5 gi|557694186|ref|YP_008797240.1| - 0.011 14.3 0.0 0.021 13.4 0.0 1.5 1 1 0 1 1 1 0 CRISPR-associated protein (Cas_Cas02710) DUF1887 PF09002.6 gi|557694186|ref|YP_008797240.1| - 0.018 13.4 0.0 0.026 12.9 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1887) FliS PF02561.9 gi|557694186|ref|YP_008797240.1| - 0.02 14.7 0.5 0.035 13.9 0.3 1.4 1 0 0 1 1 1 0 Flagellar protein FliS CompInhib_SCIN PF11546.3 gi|557694186|ref|YP_008797240.1| - 0.057 13.2 0.4 0.13 12.0 0.1 1.9 2 0 0 2 2 2 0 Staphylococcal complement inhibitor SCIN Band_7_1 PF13421.1 gi|557694186|ref|YP_008797240.1| - 0.07 12.6 0.2 0.14 11.7 0.1 1.4 1 0 0 1 1 1 0 SPFH domain-Band 7 family Cellulase PF00150.13 gi|557694189|ref|YP_008797243.1| - 2.4e-10 40.0 0.0 1.7e-09 37.3 0.0 2.0 1 1 0 1 1 1 1 Cellulase (glycosyl hydrolase family 5) Cellulase-like PF12876.2 gi|557694189|ref|YP_008797243.1| - 0.00065 20.1 0.0 0.024 15.0 0.0 2.6 2 0 0 2 2 2 1 Sugar-binding cellulase-like Ssu72 PF04722.8 gi|557694189|ref|YP_008797243.1| - 0.0096 15.2 0.7 0.96 8.7 0.3 2.4 2 0 0 2 2 2 1 Ssu72-like protein GAS PF13851.1 gi|557694189|ref|YP_008797243.1| - 0.013 14.7 8.8 0.022 13.9 6.1 1.3 1 0 0 1 1 1 0 Growth-arrest specific micro-tubule binding TPR_12 PF13424.1 gi|557694189|ref|YP_008797243.1| - 0.052 13.4 1.1 0.23 11.4 0.3 2.3 1 1 1 2 2 2 0 Tetratricopeptide repeat Spc24 PF08286.6 gi|557694189|ref|YP_008797243.1| - 0.067 12.8 4.8 0.91 9.2 0.2 2.5 2 0 0 2 2 2 0 Spc24 subunit of Ndc80 Syntaxin-6_N PF09177.6 gi|557694189|ref|YP_008797243.1| - 0.094 13.1 2.8 0.15 12.5 0.2 2.6 2 1 0 2 2 2 0 Syntaxin 6, N-terminal Myosin_tail_1 PF01576.14 gi|557694189|ref|YP_008797243.1| - 0.1 10.3 11.1 0.15 9.7 7.7 1.1 1 0 0 1 1 1 0 Myosin tail APG6 PF04111.7 gi|557694189|ref|YP_008797243.1| - 0.39 9.7 7.5 0.6 9.1 5.2 1.2 1 0 0 1 1 1 0 Autophagy protein Apg6 DUF848 PF05852.6 gi|557694189|ref|YP_008797243.1| - 7.1 6.4 9.3 2.8 7.7 0.4 2.5 1 1 1 2 2 2 0 Gammaherpesvirus protein of unknown function (DUF848) DUF559 PF04480.7 gi|557694190|ref|YP_008797244.1| - 1.5e-12 47.1 0.3 2.9e-12 46.2 0.2 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF559) DUF2726 PF10881.3 gi|557694190|ref|YP_008797244.1| - 1.6e-05 24.4 1.1 4.2e-05 23.1 0.6 1.8 1 1 1 2 2 2 1 Protein of unknown function (DUF2726) BMC PF00936.14 gi|557694190|ref|YP_008797244.1| - 0.077 12.6 0.4 0.16 11.7 0.3 1.5 1 0 0 1 1 1 0 BMC domain DUF1627 PF07789.7 gi|557694192|ref|YP_008797246.1| - 0.00068 19.2 0.0 0.0011 18.5 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF1627) UbiA PF01040.13 gi|557694193|ref|YP_008797247.1| - 9.3e-25 87.3 30.1 1.1e-24 87.0 20.9 1.1 1 0 0 1 1 1 1 UbiA prenyltransferase family Amidohydro_4 PF13147.1 gi|557694194|ref|YP_008797248.1| - 4.3e-33 115.5 0.1 6.5e-33 114.9 0.1 1.3 1 0 0 1 1 1 1 Amidohydrolase Amidohydro_1 PF01979.15 gi|557694194|ref|YP_008797248.1| - 2.8e-23 83.0 0.0 9e-23 81.4 0.0 1.7 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_5 PF13594.1 gi|557694194|ref|YP_008797248.1| - 5.3e-15 55.0 0.5 3e-14 52.5 0.0 2.5 2 0 0 2 2 2 1 Amidohydrolase Amidohydro_3 PF07969.6 gi|557694194|ref|YP_008797248.1| - 3.1e-06 26.6 0.0 0.01 15.1 0.0 2.4 2 0 0 2 2 2 2 Amidohydrolase family Urease_alpha PF00449.15 gi|557694194|ref|YP_008797248.1| - 0.15 12.1 0.8 0.42 10.7 0.1 2.0 3 0 0 3 3 3 0 Urease alpha-subunit, N-terminal domain Ald_Xan_dh_C2 PF02738.13 gi|557694195|ref|YP_008797249.1| - 6.3e-138 460.4 0.0 7.7e-138 460.1 0.0 1.0 1 0 0 1 1 1 1 Molybdopterin-binding domain of aldehyde dehydrogenase Ald_Xan_dh_C PF01315.17 gi|557694195|ref|YP_008797249.1| - 3.9e-16 59.1 0.0 9.6e-16 57.8 0.0 1.7 1 0 0 1 1 1 1 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain Ald_Xan_dh_C2 PF02738.13 gi|557694196|ref|YP_008797250.1| - 8.1e-118 394.1 2.4 1.1e-117 393.6 1.7 1.1 1 0 0 1 1 1 1 Molybdopterin-binding domain of aldehyde dehydrogenase Ald_Xan_dh_C PF01315.17 gi|557694196|ref|YP_008797250.1| - 1.5e-25 89.4 0.1 3.1e-25 88.4 0.0 1.6 1 0 0 1 1 1 1 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain Iso_dh PF00180.15 gi|557694197|ref|YP_008797251.1| - 8.2e-90 301.2 0.0 9.6e-90 301.0 0.0 1.0 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase FAD_binding_2 PF00890.19 gi|557694198|ref|YP_008797252.1| - 3.8e-106 355.4 0.6 4.6e-106 355.1 0.4 1.1 1 0 0 1 1 1 1 FAD binding domain Succ_DH_flav_C PF02910.15 gi|557694198|ref|YP_008797252.1| - 4.1e-38 130.1 0.1 6.2e-38 129.5 0.1 1.3 1 0 0 1 1 1 1 Fumarate reductase flavoprotein C-term Pyr_redox_2 PF07992.9 gi|557694198|ref|YP_008797252.1| - 1.9e-08 34.4 1.0 1.9e-05 24.6 0.3 3.2 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.17 gi|557694198|ref|YP_008797252.1| - 5.2e-05 22.2 0.6 0.00013 20.9 0.2 1.8 2 0 0 2 2 2 1 Glucose inhibited division protein A FAD_oxidored PF12831.2 gi|557694198|ref|YP_008797252.1| - 0.0014 17.7 4.1 0.036 13.1 2.7 2.5 3 0 0 3 3 3 1 FAD dependent oxidoreductase DAO PF01266.19 gi|557694198|ref|YP_008797252.1| - 0.01 14.7 3.7 0.06 12.2 2.5 2.1 1 1 0 1 1 1 0 FAD dependent oxidoreductase FAD_binding_3 PF01494.14 gi|557694198|ref|YP_008797252.1| - 0.069 12.1 0.7 0.12 11.4 0.5 1.3 1 0 0 1 1 1 0 FAD binding domain HI0933_like PF03486.9 gi|557694198|ref|YP_008797252.1| - 0.081 11.3 3.7 0.15 10.4 0.6 2.4 3 0 0 3 3 3 0 HI0933-like protein Sdh_cyt PF01127.17 gi|557694199|ref|YP_008797253.1| - 3.2e-12 46.3 1.4 5.3e-12 45.6 1.0 1.4 1 1 0 1 1 1 1 Succinate dehydrogenase/Fumarate reductase transmembrane subunit Ni_hydr_CYTB PF01292.15 gi|557694199|ref|YP_008797253.1| - 0.015 14.6 3.3 0.79 9.0 0.4 2.2 2 0 0 2 2 2 0 Prokaryotic cytochrome b561 Ferric_reduct PF01794.14 gi|557694199|ref|YP_008797253.1| - 0.018 15.0 0.0 0.039 14.0 0.0 1.7 1 1 0 1 1 1 0 Ferric reductase like transmembrane component Cytochrom_B_N PF00033.14 gi|557694199|ref|YP_008797253.1| - 0.25 10.6 5.9 1.8 7.8 0.1 2.3 2 1 0 2 2 2 0 Cytochrome b(N-terminal)/b6/petB OppC_N PF12911.2 gi|557694199|ref|YP_008797253.1| - 0.46 9.8 0.0 0.46 9.8 0.0 2.4 3 0 0 3 3 3 0 N-terminal TM domain of oligopeptide transport permease C SdpI PF13630.1 gi|557694199|ref|YP_008797253.1| - 8.3 6.1 9.0 1.4 8.7 0.3 2.8 2 1 1 3 3 3 0 SdpI/YhfL protein family Sdh_cyt PF01127.17 gi|557694200|ref|YP_008797254.1| - 3.8e-07 29.9 8.0 5.3e-07 29.4 5.5 1.2 1 0 0 1 1 1 1 Succinate dehydrogenase/Fumarate reductase transmembrane subunit Fer2_3 PF13085.1 gi|557694201|ref|YP_008797255.1| - 8.8e-34 115.6 0.1 3e-33 113.9 0.0 1.8 2 0 0 2 2 2 1 2Fe-2S iron-sulfur cluster binding domain Fer4_8 PF13183.1 gi|557694201|ref|YP_008797255.1| - 9.9e-10 38.3 3.3 1.5e-09 37.7 0.8 2.1 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|557694201|ref|YP_008797255.1| - 1.1e-08 35.3 3.5 2.3e-07 31.1 0.0 2.6 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|557694201|ref|YP_008797255.1| - 3.5e-08 33.6 1.0 3.5e-08 33.6 0.7 2.0 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|557694201|ref|YP_008797255.1| - 2.1e-07 31.0 2.4 4.9e-07 29.9 0.5 2.3 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|557694201|ref|YP_008797255.1| - 2.1e-07 31.2 14.5 1.9e-05 24.9 4.3 2.8 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|557694201|ref|YP_008797255.1| - 1e-06 28.4 2.3 1e-06 28.4 1.6 2.6 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|557694201|ref|YP_008797255.1| - 6.1e-05 22.4 2.1 6.1e-05 22.4 1.5 3.1 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|557694201|ref|YP_008797255.1| - 0.00087 19.0 0.2 0.00087 19.0 0.2 2.9 4 0 0 4 4 4 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|557694201|ref|YP_008797255.1| - 0.0016 18.2 1.5 0.0016 18.2 1.0 3.3 3 0 0 3 3 3 1 4Fe-4S binding domain Fer2 PF00111.22 gi|557694201|ref|YP_008797255.1| - 0.002 17.8 0.8 0.0066 16.1 0.1 2.1 2 0 0 2 2 2 1 2Fe-2S iron-sulfur cluster binding domain Fer4_6 PF12837.2 gi|557694201|ref|YP_008797255.1| - 0.0021 17.8 1.9 0.0021 17.8 1.3 3.1 3 0 0 3 3 3 1 4Fe-4S binding domain Fer4_4 PF12800.2 gi|557694201|ref|YP_008797255.1| - 0.0039 17.4 0.7 0.0039 17.4 0.5 3.2 3 0 0 3 3 3 1 4Fe-4S binding domain RdRP_1 PF00680.15 gi|557694201|ref|YP_008797255.1| - 0.011 13.9 0.0 0.013 13.7 0.0 1.1 1 0 0 1 1 1 0 RNA dependent RNA polymerase Fer4_16 PF13484.1 gi|557694201|ref|YP_008797255.1| - 0.022 15.5 6.6 0.022 15.5 4.6 2.7 2 1 1 3 3 3 0 4Fe-4S double cluster binding domain Fer4_20 PF14691.1 gi|557694201|ref|YP_008797255.1| - 0.024 14.2 1.6 4.9 6.8 0.4 2.3 1 1 1 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_3 PF12798.2 gi|557694201|ref|YP_008797255.1| - 0.15 12.7 0.8 0.15 12.7 0.5 3.1 3 0 0 3 3 2 0 4Fe-4S binding domain CTP_transf_2 PF01467.21 gi|557694203|ref|YP_008797257.1| - 2.8e-14 53.4 0.0 6.2e-14 52.3 0.0 1.5 1 1 0 1 1 1 1 Cytidylyltransferase PG_binding_1 PF01471.13 gi|557694203|ref|YP_008797257.1| - 0.077 12.9 0.0 0.14 12.1 0.0 1.4 1 0 0 1 1 1 0 Putative peptidoglycan binding domain Helicase_IV_N PF12462.3 gi|557694204|ref|YP_008797258.1| - 0.063 12.9 0.1 0.072 12.7 0.0 1.1 1 0 0 1 1 1 0 DNA helicase IV / RNA helicase N terminal Prominin PF05478.6 gi|557694205|ref|YP_008797259.1| - 0.00093 16.8 6.2 0.0013 16.4 4.3 1.2 1 0 0 1 1 1 1 Prominin RHD3 PF05879.7 gi|557694205|ref|YP_008797259.1| - 0.0057 14.6 6.0 0.0069 14.3 4.1 1.1 1 0 0 1 1 1 1 Root hair defective 3 GTP-binding protein (RHD3) Caudo_TAP PF02413.12 gi|557694205|ref|YP_008797259.1| - 0.0076 16.4 2.8 0.0076 16.4 1.9 2.0 1 1 1 2 2 2 1 Caudovirales tail fibre assembly protein DUF445 PF04286.7 gi|557694205|ref|YP_008797259.1| - 0.019 14.5 10.7 0.026 14.0 7.4 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF445) DUF2580 PF10824.3 gi|557694205|ref|YP_008797259.1| - 0.02 15.2 0.8 4 7.8 0.0 3.1 2 1 1 3 3 3 0 Protein of unknown function (DUF2580) Baculo_PEP_C PF04513.7 gi|557694205|ref|YP_008797259.1| - 0.024 14.4 8.1 1.2 9.0 1.9 2.3 1 1 1 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus Gp-FAR-1 PF05823.7 gi|557694205|ref|YP_008797259.1| - 0.034 14.1 12.6 0.054 13.4 3.1 2.3 1 1 1 2 2 2 0 Nematode fatty acid retinoid binding protein (Gp-FAR-1) CAP18_C PF12153.3 gi|557694205|ref|YP_008797259.1| - 0.053 13.1 1.3 6.7 6.4 0.2 3.4 3 0 0 3 3 3 0 LPS binding domain of CAP18 (C terminal) Taeniidae_ag PF05596.6 gi|557694205|ref|YP_008797259.1| - 0.067 13.0 8.8 0.2 11.5 0.7 3.0 3 1 1 4 4 3 0 Taeniidae antigen Asp23 PF03780.8 gi|557694205|ref|YP_008797259.1| - 0.081 13.2 3.1 0.89 9.8 0.3 2.5 2 1 0 2 2 2 0 Asp23 family Exonuc_VII_L PF02601.10 gi|557694205|ref|YP_008797259.1| - 0.092 11.9 8.4 0.11 11.7 5.8 1.2 1 0 0 1 1 1 0 Exonuclease VII, large subunit ISG65-75 PF11727.3 gi|557694205|ref|YP_008797259.1| - 0.094 11.7 12.0 0.3 10.1 8.4 1.9 1 1 0 1 1 1 0 Invariant surface glycoprotein ArsR PF09824.4 gi|557694205|ref|YP_008797259.1| - 0.14 11.4 2.9 0.79 9.0 0.7 2.2 1 1 1 2 2 2 0 ArsR transcriptional regulator Apolipoprotein PF01442.13 gi|557694205|ref|YP_008797259.1| - 0.16 11.4 18.2 0.16 11.4 2.8 2.0 1 1 1 2 2 2 0 Apolipoprotein A1/A4/E domain Lipoprotein_6 PF01441.14 gi|557694205|ref|YP_008797259.1| - 0.17 11.7 11.5 0.71 9.6 1.0 2.3 1 1 1 2 2 2 0 Lipoprotein DUF948 PF06103.6 gi|557694205|ref|YP_008797259.1| - 0.2 11.5 6.7 0.06 13.2 1.2 2.4 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF948) Atg14 PF10186.4 gi|557694205|ref|YP_008797259.1| - 0.45 9.4 13.2 0.65 8.8 9.1 1.2 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 Arch_flagellin PF01917.11 gi|557694205|ref|YP_008797259.1| - 0.52 9.8 5.7 10 5.6 1.9 2.4 2 0 0 2 2 2 0 Archaebacterial flagellin Mnd1 PF03962.10 gi|557694205|ref|YP_008797259.1| - 0.57 9.8 13.4 0.62 9.6 8.3 1.7 1 1 0 1 1 1 0 Mnd1 family Ada3 PF10198.4 gi|557694205|ref|YP_008797259.1| - 0.61 9.8 10.5 1.6 8.4 7.2 1.8 1 1 0 1 1 1 0 Histone acetyltransferases subunit 3 DUF883 PF05957.8 gi|557694205|ref|YP_008797259.1| - 0.71 10.3 13.6 0.12 12.7 2.7 2.7 2 1 0 2 2 2 0 Bacterial protein of unknown function (DUF883) Retrotrans_gag PF03732.12 gi|557694205|ref|YP_008797259.1| - 0.72 9.9 7.4 7.9 6.6 0.1 2.9 1 1 2 3 3 3 0 Retrotransposon gag protein MADF_DNA_bdg PF10545.4 gi|557694205|ref|YP_008797259.1| - 0.95 9.6 3.8 3.1 8.0 0.2 2.4 1 1 0 2 2 2 0 Alcohol dehydrogenase transcription factor Myb/SANT-like RE_TdeIII PF09520.5 gi|557694205|ref|YP_008797259.1| - 1.1 8.4 8.9 0.23 10.7 1.9 2.0 1 1 1 2 2 2 0 Type II restriction endonuclease, TdeIII SDH_alpha PF03313.10 gi|557694205|ref|YP_008797259.1| - 1.1 8.1 8.5 0.15 11.0 1.8 1.9 1 1 1 2 2 2 0 Serine dehydratase alpha chain TMF_DNA_bd PF12329.3 gi|557694205|ref|YP_008797259.1| - 1.2 8.9 20.0 0.79 9.5 7.8 2.8 1 1 2 3 3 3 0 TATA element modulatory factor 1 DNA binding FUSC PF04632.7 gi|557694205|ref|YP_008797259.1| - 1.2 7.4 3.9 1.9 6.8 2.7 1.3 1 0 0 1 1 1 0 Fusaric acid resistance protein family Spore_II_R PF09551.5 gi|557694205|ref|YP_008797259.1| - 1.4 8.9 9.4 0.23 11.4 1.1 2.3 1 1 1 2 2 2 0 Stage II sporulation protein R (spore_II_R) FlgM PF04316.8 gi|557694205|ref|YP_008797259.1| - 1.6 8.7 9.1 5 7.1 0.5 2.7 2 0 0 2 2 2 0 Anti-sigma-28 factor, FlgM Carbpep_Y_N PF05388.6 gi|557694205|ref|YP_008797259.1| - 1.7 8.8 6.3 2.2e+02 2.0 4.4 2.3 1 1 0 1 1 1 0 Carboxypeptidase Y pro-peptide Activator-TraM PF11657.3 gi|557694205|ref|YP_008797259.1| - 1.7 8.0 10.3 2.3 7.7 5.3 2.1 1 1 1 2 2 2 0 Transcriptional activator TraM Rootletin PF15035.1 gi|557694205|ref|YP_008797259.1| - 2.2 8.1 17.6 0.93 9.4 1.8 2.1 1 1 1 2 2 2 0 Ciliary rootlet component, centrosome cohesion GvpG PF05120.7 gi|557694205|ref|YP_008797259.1| - 2.7 7.8 11.0 0.18 11.6 1.9 2.8 1 1 0 2 2 2 0 Gas vesicle protein G AF0941-like PF14591.1 gi|557694205|ref|YP_008797259.1| - 2.9 7.9 16.2 15 5.6 11.3 2.2 1 1 0 1 1 1 0 AF0941-like YtxH PF12732.2 gi|557694205|ref|YP_008797259.1| - 3.2 8.1 9.2 1.5 9.2 2.4 2.7 2 1 0 2 2 2 0 YtxH-like protein Spc7 PF08317.6 gi|557694205|ref|YP_008797259.1| - 3.4 6.2 18.4 6.8 5.2 4.0 1.9 1 1 0 1 1 1 0 Spc7 kinetochore protein Hormone_1 PF00103.15 gi|557694205|ref|YP_008797259.1| - 4.1 6.7 7.7 1.8 7.8 0.6 2.2 1 1 1 2 2 2 0 Somatotropin hormone family HisKA_3 PF07730.8 gi|557694205|ref|YP_008797259.1| - 4.3 7.7 11.8 0.28 11.5 0.2 3.2 2 1 1 3 3 3 0 Histidine kinase Syntaxin PF00804.20 gi|557694205|ref|YP_008797259.1| - 4.5 7.5 15.1 8.9e+02 0.1 10.5 2.7 1 1 0 1 1 1 0 Syntaxin TMPIT PF07851.8 gi|557694205|ref|YP_008797259.1| - 4.7 6.1 11.5 5.9 5.8 3.0 2.0 1 1 1 2 2 2 0 TMPIT-like protein IZUMO PF15005.1 gi|557694205|ref|YP_008797259.1| - 4.9 7.1 9.6 5.1 7.1 4.2 2.0 1 1 1 2 2 2 0 Izumo sperm-egg fusion Fib_alpha PF08702.5 gi|557694205|ref|YP_008797259.1| - 6.6 6.8 9.4 16 5.6 6.3 1.8 1 1 0 1 1 1 0 Fibrinogen alpha/beta chain family Cauli_AT PF03233.8 gi|557694205|ref|YP_008797259.1| - 6.9 6.3 11.3 8.2 6.1 2.4 2.3 1 1 1 2 2 2 0 Aphid transmission protein MIF4G_like_2 PF09090.6 gi|557694205|ref|YP_008797259.1| - 7 5.7 11.3 11 5.1 7.7 1.4 1 1 0 1 1 1 0 MIF4G like AAA_32 PF13654.1 gi|557694205|ref|YP_008797259.1| - 8.5 4.9 16.0 14 4.1 10.8 1.5 1 1 1 2 2 2 0 AAA domain MarR_2 PF12802.2 gi|557694206|ref|YP_008797260.1| - 6.7e-09 35.2 0.4 1.6e-08 34.0 0.2 1.6 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.5 gi|557694206|ref|YP_008797260.1| - 7.4e-09 35.0 0.1 1.5e-08 34.1 0.1 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_24 PF13412.1 gi|557694206|ref|YP_008797260.1| - 1.5e-06 27.4 0.0 2.4e-06 26.7 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR PF01047.17 gi|557694206|ref|YP_008797260.1| - 2.3e-06 27.2 0.0 5.2e-06 26.0 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.15 gi|557694206|ref|YP_008797260.1| - 4e-06 26.4 0.0 7.8e-06 25.4 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family TrmB PF01978.14 gi|557694206|ref|YP_008797260.1| - 2e-05 24.2 0.3 4.2e-05 23.1 0.2 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.2 gi|557694206|ref|YP_008797260.1| - 5.1e-05 22.9 0.2 9.7e-05 22.1 0.2 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain Penicillinase_R PF03965.11 gi|557694206|ref|YP_008797260.1| - 0.00019 21.4 0.4 0.00038 20.5 0.3 1.4 1 0 0 1 1 1 1 Penicillinase repressor HTH_28 PF13518.1 gi|557694206|ref|YP_008797260.1| - 0.00021 21.1 0.0 0.0005 20.0 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.1 gi|557694206|ref|YP_008797260.1| - 0.00037 20.0 0.1 0.00078 19.0 0.0 1.6 1 0 0 1 1 1 1 Homeodomain-like domain HTH_Crp_2 PF13545.1 gi|557694206|ref|YP_008797260.1| - 0.00053 19.7 0.0 0.0011 18.7 0.0 1.5 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain Sigma70_r4 PF04545.11 gi|557694206|ref|YP_008797260.1| - 0.00093 18.4 0.2 0.002 17.4 0.1 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_38 PF13936.1 gi|557694206|ref|YP_008797260.1| - 0.0032 16.9 0.0 0.0057 16.1 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.7 gi|557694206|ref|YP_008797260.1| - 0.0033 17.0 0.0 0.0061 16.1 0.0 1.4 1 0 0 1 1 1 1 HTH domain CENP-B_N PF04218.8 gi|557694206|ref|YP_008797260.1| - 0.0063 15.9 0.0 0.011 15.1 0.0 1.4 1 0 0 1 1 1 1 CENP-B N-terminal DNA-binding domain HTH_8 PF02954.14 gi|557694206|ref|YP_008797260.1| - 0.0072 15.8 0.0 0.018 14.5 0.0 1.7 1 0 0 1 1 1 1 Bacterial regulatory protein, Fis family HTH_29 PF13551.1 gi|557694206|ref|YP_008797260.1| - 0.0077 16.3 0.2 0.017 15.2 0.1 1.5 1 0 0 1 1 1 1 Winged helix-turn helix FeoC PF09012.5 gi|557694206|ref|YP_008797260.1| - 0.009 15.7 0.1 0.018 14.7 0.1 1.4 1 0 0 1 1 1 1 FeoC like transcriptional regulator Sigma70_r4_2 PF08281.7 gi|557694206|ref|YP_008797260.1| - 0.01 15.2 0.0 0.017 14.5 0.0 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 Crp PF00325.15 gi|557694206|ref|YP_008797260.1| - 0.011 15.2 1.0 0.041 13.3 0.0 2.2 2 0 0 2 2 2 0 Bacterial regulatory proteins, crp family Fe_dep_repress PF01325.14 gi|557694206|ref|YP_008797260.1| - 0.025 14.5 0.3 0.052 13.5 0.2 1.5 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain KorB PF08535.5 gi|557694206|ref|YP_008797260.1| - 0.029 14.5 0.0 0.058 13.5 0.0 1.5 1 0 0 1 1 1 0 KorB domain GntR PF00392.16 gi|557694206|ref|YP_008797260.1| - 0.031 13.7 1.7 0.1 12.0 0.6 2.1 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family HTH_7 PF02796.10 gi|557694206|ref|YP_008797260.1| - 0.033 14.0 0.0 0.084 12.7 0.0 1.8 2 0 0 2 2 1 0 Helix-turn-helix domain of resolvase Rrf2 PF02082.15 gi|557694206|ref|YP_008797260.1| - 0.036 14.1 0.1 0.087 12.9 0.0 1.6 1 0 0 1 1 1 0 Transcriptional regulator HTH_36 PF13730.1 gi|557694206|ref|YP_008797260.1| - 0.075 13.1 0.0 0.15 12.1 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_27 PF13463.1 gi|557694206|ref|YP_008797260.1| - 0.094 13.0 0.1 0.18 12.1 0.1 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_AsnC-type PF13404.1 gi|557694206|ref|YP_008797260.1| - 0.11 12.0 0.1 0.72 9.4 0.0 2.3 2 1 1 3 3 3 0 AsnC-type helix-turn-helix domain Phage_terminase PF10668.4 gi|557694206|ref|YP_008797260.1| - 0.12 12.2 0.0 0.21 11.3 0.0 1.3 1 0 0 1 1 1 0 Phage terminase small subunit Actin PF00022.14 gi|557694207|ref|YP_008797261.1| - 2e-18 65.9 0.0 4e-18 65.0 0.0 1.4 1 0 0 1 1 1 1 Actin Cupin_4 PF08007.7 gi|557694208|ref|YP_008797262.1| - 0.11 11.7 0.1 0.14 11.3 0.0 1.2 1 0 0 1 1 1 0 Cupin superfamily protein MS_channel PF00924.13 gi|557694209|ref|YP_008797263.1| - 1.7e-31 109.1 0.4 2.9e-31 108.4 0.3 1.3 1 0 0 1 1 1 1 Mechanosensitive ion channel SseB_C PF14581.1 gi|557694209|ref|YP_008797263.1| - 0.035 13.9 0.1 0.053 13.3 0.1 1.2 1 0 0 1 1 1 0 SseB protein C-terminal domain VIT1 PF01988.14 gi|557694210|ref|YP_008797264.1| - 2.2e-19 69.8 18.0 4.3e-17 62.3 12.5 2.0 1 1 0 1 1 1 1 VIT family DUF4118 PF13493.1 gi|557694210|ref|YP_008797264.1| - 0.0073 16.4 4.0 0.0073 16.4 2.8 2.4 3 0 0 3 3 3 1 Domain of unknown function (DUF4118) IF-2B PF01008.12 gi|557694211|ref|YP_008797265.1| - 7.7e-85 284.2 0.1 8.9e-85 284.0 0.0 1.0 1 0 0 1 1 1 1 Initiation factor 2 subunit family Pyr_redox_2 PF07992.9 gi|557694212|ref|YP_008797266.1| - 1.7e-14 54.2 0.0 3.3e-14 53.2 0.0 1.5 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|557694212|ref|YP_008797266.1| - 1.2e-09 37.6 0.1 0.00074 18.5 0.0 2.3 2 0 0 2 2 2 2 FAD dependent oxidoreductase Pyr_redox PF00070.22 gi|557694212|ref|YP_008797266.1| - 1.2e-05 25.5 0.1 0.046 14.1 0.0 2.8 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.1 gi|557694212|ref|YP_008797266.1| - 2.7e-05 24.1 0.0 8.8e-05 22.4 0.0 1.9 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.19 gi|557694212|ref|YP_008797266.1| - 0.0015 17.4 0.0 0.01 14.7 0.0 2.1 2 0 0 2 2 2 1 FAD binding domain NAD_binding_9 PF13454.1 gi|557694212|ref|YP_008797266.1| - 0.0019 18.0 0.2 0.52 10.0 0.0 2.5 2 0 0 2 2 2 2 FAD-NAD(P)-binding Pyr_redox_3 PF13738.1 gi|557694212|ref|YP_008797266.1| - 0.036 14.1 0.0 0.49 10.4 0.0 2.4 3 0 0 3 3 3 0 Pyridine nucleotide-disulphide oxidoreductase Trp_halogenase PF04820.9 gi|557694212|ref|YP_008797266.1| - 0.19 10.2 0.0 0.28 9.7 0.0 1.2 1 0 0 1 1 1 0 Tryptophan halogenase Aconitase PF00330.15 gi|557694213|ref|YP_008797267.1| - 3e-138 461.1 0.0 1.8e-137 458.5 0.0 1.9 1 1 0 1 1 1 1 Aconitase family (aconitate hydratase) Aconitase_C PF00694.14 gi|557694213|ref|YP_008797267.1| - 1.2e-41 141.8 0.0 2e-41 141.1 0.0 1.3 1 0 0 1 1 1 1 Aconitase C-terminal domain Reprolysin_4 PF13583.1 gi|557694214|ref|YP_008797268.1| - 2.9e-05 23.6 0.3 0.00024 20.7 0.1 2.1 2 0 0 2 2 2 1 Metallo-peptidase family M12B Reprolysin-like IncA PF04156.9 gi|557694214|ref|YP_008797268.1| - 3e-05 23.6 2.3 7.7e-05 22.3 1.6 1.7 1 0 0 1 1 1 1 IncA protein CENP-F_leu_zip PF10473.4 gi|557694214|ref|YP_008797268.1| - 5.3e-05 23.0 12.8 9.5e-05 22.2 8.9 1.3 1 0 0 1 1 1 1 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Spc7 PF08317.6 gi|557694214|ref|YP_008797268.1| - 0.00024 19.9 1.4 0.00049 18.8 0.9 1.4 1 0 0 1 1 1 1 Spc7 kinetochore protein Reprolysin_5 PF13688.1 gi|557694214|ref|YP_008797268.1| - 0.00034 20.6 0.0 0.00091 19.2 0.0 1.7 2 0 0 2 2 1 1 Metallo-peptidase family M12 CCDC-167 PF15188.1 gi|557694214|ref|YP_008797268.1| - 0.00034 20.4 2.5 0.00034 20.4 1.7 2.6 2 1 1 3 3 2 1 Coiled-coil domain-containing protein 167 Atg14 PF10186.4 gi|557694214|ref|YP_008797268.1| - 0.00036 19.5 1.9 0.00065 18.7 1.3 1.3 1 0 0 1 1 1 1 UV radiation resistance protein and autophagy-related subunit 14 Reprolysin_2 PF13574.1 gi|557694214|ref|YP_008797268.1| - 0.00043 20.3 0.3 0.00095 19.2 0.1 1.6 2 0 0 2 2 1 1 Metallo-peptidase family M12B Reprolysin-like TMCO5 PF14992.1 gi|557694214|ref|YP_008797268.1| - 0.0006 19.0 2.8 0.0011 18.2 1.9 1.3 1 0 0 1 1 1 1 TMCO5 family DUF2730 PF10805.3 gi|557694214|ref|YP_008797268.1| - 0.00062 19.4 2.5 0.0028 17.3 1.0 2.3 1 1 1 2 2 2 1 Protein of unknown function (DUF2730) Tropomyosin_1 PF12718.2 gi|557694214|ref|YP_008797268.1| - 0.0018 18.1 14.8 0.0055 16.5 10.5 1.6 1 1 1 2 2 2 1 Tropomyosin like Filament PF00038.16 gi|557694214|ref|YP_008797268.1| - 0.0026 17.2 7.7 0.0048 16.4 5.3 1.4 1 0 0 1 1 1 1 Intermediate filament protein AAA_13 PF13166.1 gi|557694214|ref|YP_008797268.1| - 0.0028 16.2 2.3 0.0043 15.5 1.6 1.2 1 0 0 1 1 1 1 AAA domain Reprolysin_3 PF13582.1 gi|557694214|ref|YP_008797268.1| - 0.0031 18.0 0.0 0.0096 16.4 0.0 1.8 2 0 0 2 2 1 1 Metallo-peptidase family M12B Reprolysin-like ATG16 PF08614.6 gi|557694214|ref|YP_008797268.1| - 0.0048 16.7 5.7 0.01 15.6 4.0 1.5 1 0 0 1 1 1 1 Autophagy protein 16 (ATG16) DUF869 PF05911.6 gi|557694214|ref|YP_008797268.1| - 0.005 15.1 3.3 0.0065 14.7 2.3 1.1 1 0 0 1 1 1 1 Plant protein of unknown function (DUF869) APG6 PF04111.7 gi|557694214|ref|YP_008797268.1| - 0.0053 15.8 4.4 0.0093 15.0 3.1 1.4 1 0 0 1 1 1 1 Autophagy protein Apg6 TPR_MLP1_2 PF07926.7 gi|557694214|ref|YP_008797268.1| - 0.014 15.1 13.5 0.1 12.3 3.8 2.4 1 1 1 2 2 2 0 TPR/MLP1/MLP2-like protein DUF4407 PF14362.1 gi|557694214|ref|YP_008797268.1| - 0.034 13.1 3.4 0.055 12.4 2.3 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) WEMBL PF05701.6 gi|557694214|ref|YP_008797268.1| - 0.04 12.3 12.2 0.066 11.6 8.4 1.2 1 0 0 1 1 1 0 Weak chloroplast movement under blue light TMF_TATA_bd PF12325.3 gi|557694214|ref|YP_008797268.1| - 0.046 13.4 13.1 0.45 10.2 4.5 2.4 1 1 1 2 2 2 0 TATA element modulatory factor 1 TATA binding DUF3584 PF12128.3 gi|557694214|ref|YP_008797268.1| - 0.064 10.5 10.4 0.09 10.0 7.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) LPP PF04728.8 gi|557694214|ref|YP_008797268.1| - 0.064 13.0 0.0 0.51 10.1 0.1 2.3 2 0 0 2 2 2 0 Lipoprotein leucine-zipper TMPIT PF07851.8 gi|557694214|ref|YP_008797268.1| - 0.065 12.2 0.1 0.12 11.4 0.1 1.4 1 0 0 1 1 1 0 TMPIT-like protein Peptidase_M57 PF12388.3 gi|557694214|ref|YP_008797268.1| - 0.077 12.3 0.1 0.39 10.0 0.1 2.0 2 0 0 2 2 2 0 Dual-action HEIGH metallo-peptidase DUF342 PF03961.8 gi|557694214|ref|YP_008797268.1| - 0.08 11.3 0.9 0.14 10.5 0.6 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF342) MAD PF05557.8 gi|557694214|ref|YP_008797268.1| - 0.083 10.9 6.9 0.13 10.3 4.8 1.2 1 0 0 1 1 1 0 Mitotic checkpoint protein zf-C4H2 PF10146.4 gi|557694214|ref|YP_008797268.1| - 0.086 12.8 5.1 0.18 11.8 3.5 1.5 1 0 0 1 1 1 0 Zinc finger-containing protein Peptidase_M66 PF10462.4 gi|557694214|ref|YP_008797268.1| - 0.1 11.4 0.9 0.16 10.7 0.7 1.2 1 0 0 1 1 1 0 Peptidase M66 PEARLI-4 PF05278.7 gi|557694214|ref|YP_008797268.1| - 0.1 11.9 3.9 0.23 10.8 2.7 1.5 1 0 0 1 1 1 0 Arabidopsis phospholipase-like protein (PEARLI 4) IFT57 PF10498.4 gi|557694214|ref|YP_008797268.1| - 0.11 11.2 4.0 0.19 10.4 2.7 1.3 1 0 0 1 1 1 0 Intra-flagellar transport protein 57 DUF1664 PF07889.7 gi|557694214|ref|YP_008797268.1| - 0.12 12.2 3.5 0.45 10.3 2.4 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF1664) Mod_r PF07200.8 gi|557694214|ref|YP_008797268.1| - 0.12 12.2 6.9 0.25 11.2 4.3 1.7 1 1 0 1 1 1 0 Modifier of rudimentary (Mod(r)) protein RmuC PF02646.11 gi|557694214|ref|YP_008797268.1| - 0.13 11.0 4.7 0.15 10.8 0.5 2.2 1 1 1 2 2 2 0 RmuC family Peptidase_M10 PF00413.19 gi|557694214|ref|YP_008797268.1| - 0.18 11.5 0.7 0.43 10.2 0.1 1.8 2 0 0 2 2 1 0 Matrixin Reo_sigmaC PF04582.7 gi|557694214|ref|YP_008797268.1| - 0.23 10.6 0.1 0.42 9.7 0.1 1.4 1 0 0 1 1 1 0 Reovirus sigma C capsid protein DUF4398 PF14346.1 gi|557694214|ref|YP_008797268.1| - 0.26 11.3 10.6 0.43 10.6 7.3 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4398) TMF_DNA_bd PF12329.3 gi|557694214|ref|YP_008797268.1| - 0.27 11.0 14.7 0.9 9.3 4.8 2.4 1 1 1 2 2 2 0 TATA element modulatory factor 1 DNA binding V_ATPase_I PF01496.14 gi|557694214|ref|YP_008797268.1| - 0.27 9.0 4.4 0.53 8.0 3.0 1.4 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family Seryl_tRNA_N PF02403.17 gi|557694214|ref|YP_008797268.1| - 0.28 11.1 10.2 2.9 7.9 3.5 2.4 1 1 1 2 2 2 0 Seryl-tRNA synthetase N-terminal domain FUSC PF04632.7 gi|557694214|ref|YP_008797268.1| - 0.29 9.4 4.7 0.44 8.9 3.2 1.1 1 0 0 1 1 1 0 Fusaric acid resistance protein family AKNA PF12443.3 gi|557694214|ref|YP_008797268.1| - 0.3 11.1 1.5 6.4 6.8 0.8 2.2 1 1 1 2 2 2 0 AT-hook-containing transcription factor GRA6 PF05084.8 gi|557694214|ref|YP_008797268.1| - 0.41 10.1 5.6 0.87 9.0 3.5 1.7 2 0 0 2 2 1 0 Granule antigen protein (GRA6) GAS PF13851.1 gi|557694214|ref|YP_008797268.1| - 0.43 9.7 14.6 0.069 12.3 6.2 2.0 2 0 0 2 2 2 0 Growth-arrest specific micro-tubule binding DivIVA PF05103.8 gi|557694214|ref|YP_008797268.1| - 0.54 10.3 10.4 1.1 9.2 7.2 1.5 1 0 0 1 1 1 0 DivIVA protein FlaC_arch PF05377.6 gi|557694214|ref|YP_008797268.1| - 0.54 10.1 7.2 0.7 9.8 0.2 3.3 2 1 1 3 3 2 0 Flagella accessory protein C (FlaC) AAA_27 PF13514.1 gi|557694214|ref|YP_008797268.1| - 0.56 7.8 14.2 1.1 6.7 9.8 1.4 1 1 0 1 1 1 0 AAA domain HAUS5 PF14817.1 gi|557694214|ref|YP_008797268.1| - 0.71 8.3 7.9 0.83 8.1 4.9 1.4 2 0 0 2 2 1 0 HAUS augmin-like complex subunit 5 BTV_NS2 PF04514.7 gi|557694214|ref|YP_008797268.1| - 0.82 8.4 4.4 1.3 7.8 3.0 1.2 1 0 0 1 1 1 0 Bluetongue virus non-structural protein NS2 Tropomyosin PF00261.15 gi|557694214|ref|YP_008797268.1| - 0.82 8.7 16.7 2.1 7.3 11.0 1.6 1 1 0 1 1 1 0 Tropomyosin V-SNARE PF05008.10 gi|557694214|ref|YP_008797268.1| - 0.86 9.8 9.8 2.6 8.2 6.7 2.0 1 1 0 1 1 1 0 Vesicle transport v-SNARE protein N-terminus Vps5 PF09325.5 gi|557694214|ref|YP_008797268.1| - 0.87 8.7 7.9 0.88 8.7 2.5 2.2 1 1 1 2 2 2 0 Vps5 C terminal like Fzo_mitofusin PF04799.8 gi|557694214|ref|YP_008797268.1| - 0.99 8.7 3.2 3.6 6.9 1.9 2.0 1 1 0 1 1 1 0 fzo-like conserved region XhlA PF10779.4 gi|557694214|ref|YP_008797268.1| - 1.5 8.7 5.2 0.89 9.5 0.1 2.4 1 1 1 2 2 2 0 Haemolysin XhlA Phage_GP20 PF06810.6 gi|557694214|ref|YP_008797268.1| - 1.7 8.0 4.9 4 6.8 3.4 1.5 1 1 0 1 1 1 0 Phage minor structural protein GP20 Laminin_II PF06009.7 gi|557694214|ref|YP_008797268.1| - 1.8 8.3 8.5 0.25 11.0 3.1 1.6 2 0 0 2 2 1 0 Laminin Domain II NPV_P10 PF05531.7 gi|557694214|ref|YP_008797268.1| - 2.1 8.6 6.9 0.28 11.4 0.9 2.4 2 1 1 3 3 1 0 Nucleopolyhedrovirus P10 protein DUF4618 PF15397.1 gi|557694214|ref|YP_008797268.1| - 2.3 7.5 10.7 5.6 6.2 2.0 2.8 2 1 1 3 3 3 0 Domain of unknown function (DUF4618) ADIP PF11559.3 gi|557694214|ref|YP_008797268.1| - 2.6 7.9 17.2 0.15 11.9 6.6 2.5 2 1 1 3 3 2 0 Afadin- and alpha -actinin-Binding Prefoldin_2 PF01920.15 gi|557694214|ref|YP_008797268.1| - 2.8 7.7 12.2 11 5.7 0.0 3.5 2 1 2 4 4 3 0 Prefoldin subunit CP12 PF02672.10 gi|557694214|ref|YP_008797268.1| - 4 7.9 6.9 6.8 7.2 4.2 1.8 1 1 1 2 2 1 0 CP12 domain COG2 PF06148.6 gi|557694214|ref|YP_008797268.1| - 5 6.9 6.9 53 3.6 4.4 2.5 1 1 0 1 1 1 0 COG (conserved oligomeric Golgi) complex component, COG2 DUF641 PF04859.7 gi|557694214|ref|YP_008797268.1| - 5.8 6.6 9.5 7.1 6.3 0.5 2.4 1 1 1 2 2 2 0 Plant protein of unknown function (DUF641) DivIC PF04977.10 gi|557694214|ref|YP_008797268.1| - 6.2 6.3 13.9 3.6 7.1 1.6 3.3 1 1 2 3 3 3 0 Septum formation initiator TBPIP PF07106.8 gi|557694214|ref|YP_008797268.1| - 6.3 6.3 10.8 2.2 7.8 2.5 2.3 2 1 1 3 3 2 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) Mnd1 PF03962.10 gi|557694214|ref|YP_008797268.1| - 7.2 6.2 12.4 6.4 6.3 7.0 2.1 2 1 0 2 2 1 0 Mnd1 family DUF4200 PF13863.1 gi|557694214|ref|YP_008797268.1| - 7.9 6.4 14.2 47 3.9 9.9 2.0 1 1 0 1 1 1 0 Domain of unknown function (DUF4200) Fmp27_WPPW PF10359.4 gi|557694214|ref|YP_008797268.1| - 9.2 4.5 8.8 12 4.1 3.8 2.1 2 0 0 2 2 2 0 RNA pol II promoter Fmp27 protein domain Reprolysin_4 PF13583.1 gi|557694215|ref|YP_008797269.1| - 7.3e-06 25.6 0.1 1.7e-05 24.4 0.1 1.5 1 0 0 1 1 1 1 Metallo-peptidase family M12B Reprolysin-like GAS PF13851.1 gi|557694215|ref|YP_008797269.1| - 4.2e-05 22.8 16.3 0.00022 20.5 10.5 2.1 2 0 0 2 2 2 1 Growth-arrest specific micro-tubule binding TMPIT PF07851.8 gi|557694215|ref|YP_008797269.1| - 0.00011 21.4 3.9 0.00015 20.9 2.7 1.2 1 0 0 1 1 1 1 TMPIT-like protein Reprolysin_5 PF13688.1 gi|557694215|ref|YP_008797269.1| - 0.00011 22.2 1.0 0.00034 20.6 0.0 2.0 2 0 0 2 2 2 1 Metallo-peptidase family M12 Reprolysin_2 PF13574.1 gi|557694215|ref|YP_008797269.1| - 0.00024 21.1 0.0 0.00054 20.0 0.0 1.5 1 0 0 1 1 1 1 Metallo-peptidase family M12B Reprolysin-like CCDC-167 PF15188.1 gi|557694215|ref|YP_008797269.1| - 0.00052 19.8 2.8 0.00052 19.8 2.0 2.6 3 0 0 3 3 2 1 Coiled-coil domain-containing protein 167 AAA_27 PF13514.1 gi|557694215|ref|YP_008797269.1| - 0.003 15.3 11.8 0.0043 14.8 8.2 1.1 1 0 0 1 1 1 1 AAA domain Reprolysin_3 PF13582.1 gi|557694215|ref|YP_008797269.1| - 0.0032 17.9 0.0 0.008 16.6 0.0 1.7 1 0 0 1 1 1 1 Metallo-peptidase family M12B Reprolysin-like Fib_alpha PF08702.5 gi|557694215|ref|YP_008797269.1| - 0.0037 17.3 12.8 0.0081 16.2 8.9 1.5 1 0 0 1 1 1 1 Fibrinogen alpha/beta chain family Reprolysin PF01421.14 gi|557694215|ref|YP_008797269.1| - 0.0037 16.8 0.0 0.0083 15.7 0.0 1.5 1 0 0 1 1 1 1 Reprolysin (M12B) family zinc metalloprotease Laminin_II PF06009.7 gi|557694215|ref|YP_008797269.1| - 0.0038 16.9 10.6 0.0069 16.1 7.4 1.3 1 0 0 1 1 1 1 Laminin Domain II AAA_13 PF13166.1 gi|557694215|ref|YP_008797269.1| - 0.0059 15.1 3.8 0.01 14.3 2.6 1.4 1 0 0 1 1 1 1 AAA domain Peptidase_M10 PF00413.19 gi|557694215|ref|YP_008797269.1| - 0.0077 15.9 0.1 0.02 14.5 0.0 1.7 1 0 0 1 1 1 1 Matrixin DUF342 PF03961.8 gi|557694215|ref|YP_008797269.1| - 0.0078 14.6 6.4 0.012 14.0 4.5 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF342) Filament PF00038.16 gi|557694215|ref|YP_008797269.1| - 0.0082 15.6 12.5 0.015 14.7 8.6 1.4 1 0 0 1 1 1 1 Intermediate filament protein DUF812 PF05667.6 gi|557694215|ref|YP_008797269.1| - 0.0099 14.4 6.1 0.013 14.0 4.2 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF812) Atg14 PF10186.4 gi|557694215|ref|YP_008797269.1| - 0.011 14.6 14.3 0.019 13.9 9.9 1.3 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 APG6 PF04111.7 gi|557694215|ref|YP_008797269.1| - 0.012 14.6 14.0 0.022 13.7 9.7 1.4 1 0 0 1 1 1 0 Autophagy protein Apg6 CorA PF01544.13 gi|557694215|ref|YP_008797269.1| - 0.014 14.4 8.4 0.026 13.5 5.8 1.3 1 0 0 1 1 1 0 CorA-like Mg2+ transporter protein WEMBL PF05701.6 gi|557694215|ref|YP_008797269.1| - 0.015 13.8 15.4 0.029 12.8 10.7 1.3 1 0 0 1 1 1 0 Weak chloroplast movement under blue light HOOK PF05622.7 gi|557694215|ref|YP_008797269.1| - 0.021 12.6 11.4 0.031 12.1 7.9 1.1 1 0 0 1 1 1 0 HOOK protein Spc7 PF08317.6 gi|557694215|ref|YP_008797269.1| - 0.023 13.3 18.3 0.19 10.3 11.8 2.1 1 1 1 2 2 2 0 Spc7 kinetochore protein Astacin PF01400.19 gi|557694215|ref|YP_008797269.1| - 0.032 13.6 0.1 0.056 12.8 0.0 1.3 1 0 0 1 1 1 0 Astacin (Peptidase family M12A) Peptidase_M54 PF07998.6 gi|557694215|ref|YP_008797269.1| - 0.039 13.7 0.1 0.14 11.9 0.0 1.9 2 0 0 2 2 1 0 Peptidase family M54 Peptidase_M8 PF01457.11 gi|557694215|ref|YP_008797269.1| - 0.05 11.9 0.0 0.082 11.2 0.0 1.2 1 0 0 1 1 1 0 Leishmanolysin Peptidase_M57 PF12388.3 gi|557694215|ref|YP_008797269.1| - 0.052 12.8 0.1 0.13 11.6 0.0 1.6 1 0 0 1 1 1 0 Dual-action HEIGH metallo-peptidase Macoilin PF09726.4 gi|557694215|ref|YP_008797269.1| - 0.06 11.6 14.5 0.087 11.0 10.0 1.1 1 0 0 1 1 1 0 Transmembrane protein DUF2562 PF10814.3 gi|557694215|ref|YP_008797269.1| - 0.066 13.1 4.3 0.038 13.9 0.8 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF2562) CENP-F_leu_zip PF10473.4 gi|557694215|ref|YP_008797269.1| - 0.074 12.9 20.7 0.44 10.4 14.4 2.0 1 1 0 1 1 1 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Seryl_tRNA_N PF02403.17 gi|557694215|ref|YP_008797269.1| - 0.081 12.9 16.2 0.55 10.2 5.5 2.5 1 1 1 2 2 2 0 Seryl-tRNA synthetase N-terminal domain Tropomyosin PF00261.15 gi|557694215|ref|YP_008797269.1| - 0.085 11.9 18.9 0.9 8.5 12.3 2.1 1 1 1 2 2 2 0 Tropomyosin HAUS5 PF14817.1 gi|557694215|ref|YP_008797269.1| - 0.098 11.1 15.8 0.16 10.4 11.0 1.2 1 0 0 1 1 1 0 HAUS augmin-like complex subunit 5 TMF_DNA_bd PF12329.3 gi|557694215|ref|YP_008797269.1| - 0.1 12.4 22.2 0.19 11.5 8.4 2.6 1 1 1 2 2 2 0 TATA element modulatory factor 1 DNA binding Tropomyosin_1 PF12718.2 gi|557694215|ref|YP_008797269.1| - 0.12 12.2 19.9 0.19 11.5 6.0 2.2 1 1 1 2 2 2 0 Tropomyosin like MCPsignal PF00015.16 gi|557694215|ref|YP_008797269.1| - 0.16 11.5 7.2 0.26 10.7 5.0 1.2 1 0 0 1 1 1 0 Methyl-accepting chemotaxis protein (MCP) signalling domain CENP-H PF05837.7 gi|557694215|ref|YP_008797269.1| - 0.16 12.1 10.3 0.32 11.1 7.1 1.5 1 0 0 1 1 1 0 Centromere protein H (CENP-H) TPR_MLP1_2 PF07926.7 gi|557694215|ref|YP_008797269.1| - 0.16 11.7 16.3 0.35 10.6 11.3 1.5 1 0 0 1 1 1 0 TPR/MLP1/MLP2-like protein Uds1 PF15456.1 gi|557694215|ref|YP_008797269.1| - 0.18 11.8 15.3 0.26 11.2 10.1 1.6 2 0 0 2 2 1 0 Up-regulated During Septation BLOC1_2 PF10046.4 gi|557694215|ref|YP_008797269.1| - 0.19 11.8 11.9 6 7.0 1.6 2.6 1 1 1 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Reo_sigmaC PF04582.7 gi|557694215|ref|YP_008797269.1| - 0.2 10.7 4.5 2.5 7.2 0.1 2.1 1 1 1 2 2 2 0 Reovirus sigma C capsid protein Tup_N PF08581.5 gi|557694215|ref|YP_008797269.1| - 0.21 11.8 16.9 0.31 11.2 4.8 2.5 1 1 1 2 2 2 0 Tup N-terminal IFT57 PF10498.4 gi|557694215|ref|YP_008797269.1| - 0.27 9.9 11.8 0.45 9.2 8.2 1.2 1 0 0 1 1 1 0 Intra-flagellar transport protein 57 EzrA PF06160.7 gi|557694215|ref|YP_008797269.1| - 0.31 9.1 12.9 0.6 8.2 9.0 1.4 1 0 0 1 1 1 0 Septation ring formation regulator, EzrA ATG16 PF08614.6 gi|557694215|ref|YP_008797269.1| - 0.37 10.5 19.3 1.2 8.9 13.3 1.7 1 1 0 1 1 1 0 Autophagy protein 16 (ATG16) DUF3584 PF12128.3 gi|557694215|ref|YP_008797269.1| - 0.48 7.6 15.4 0.74 7.0 10.6 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) DUF3708 PF12501.3 gi|557694215|ref|YP_008797269.1| - 0.52 10.1 5.5 1.3 8.8 3.8 1.7 1 0 0 1 1 1 0 Phosphate ATP-binding cassette transporter zf-CpG_bind_C PF12269.3 gi|557694215|ref|YP_008797269.1| - 0.6 9.5 7.4 1.2 8.5 5.1 1.4 1 0 0 1 1 1 0 CpG binding protein zinc finger C terminal domain CCDC155 PF14662.1 gi|557694215|ref|YP_008797269.1| - 0.71 9.4 19.3 1.4 8.4 13.4 1.4 1 0 0 1 1 1 0 Coiled-coil region of CCDC155 V_ATPase_I PF01496.14 gi|557694215|ref|YP_008797269.1| - 0.78 7.5 7.7 1.2 6.9 5.3 1.2 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family Tmemb_cc2 PF10267.4 gi|557694215|ref|YP_008797269.1| - 0.8 8.2 13.3 1.2 7.6 9.2 1.1 1 0 0 1 1 1 0 Predicted transmembrane and coiled-coil 2 protein DUF972 PF06156.8 gi|557694215|ref|YP_008797269.1| - 0.85 10.0 14.9 11 6.4 6.0 2.7 1 1 1 2 2 2 0 Protein of unknown function (DUF972) CALCOCO1 PF07888.6 gi|557694215|ref|YP_008797269.1| - 0.88 7.7 12.3 1.3 7.1 8.5 1.1 1 0 0 1 1 1 0 Calcium binding and coiled-coil domain (CALCOCO1) like ERM PF00769.14 gi|557694215|ref|YP_008797269.1| - 0.93 8.9 18.6 1.4 8.3 12.9 1.1 1 0 0 1 1 1 0 Ezrin/radixin/moesin family TBPIP PF07106.8 gi|557694215|ref|YP_008797269.1| - 1 8.8 16.5 2.9 7.4 7.4 2.2 1 1 1 2 2 2 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) ADIP PF11559.3 gi|557694215|ref|YP_008797269.1| - 1.1 9.2 20.7 0.48 10.3 6.9 1.9 1 1 0 1 1 1 0 Afadin- and alpha -actinin-Binding Prefoldin_2 PF01920.15 gi|557694215|ref|YP_008797269.1| - 1.1 9.1 20.1 48 3.7 3.7 2.8 1 1 1 2 2 2 0 Prefoldin subunit Snapin_Pallidin PF14712.1 gi|557694215|ref|YP_008797269.1| - 1.2 9.5 17.2 0.95 9.8 5.1 2.4 1 1 1 2 2 2 0 Snapin/Pallidin Cluap1 PF10234.4 gi|557694215|ref|YP_008797269.1| - 1.2 8.2 13.4 1.9 7.6 9.3 1.3 1 0 0 1 1 1 0 Clusterin-associated protein-1 Mnd1 PF03962.10 gi|557694215|ref|YP_008797269.1| - 1.3 8.6 17.5 3.6 7.2 12.0 1.7 1 1 0 1 1 1 0 Mnd1 family FadA PF09403.5 gi|557694215|ref|YP_008797269.1| - 1.6 8.7 11.6 1.6 8.7 6.6 2.0 2 0 0 2 2 1 0 Adhesion protein FadA Jnk-SapK_ap_N PF09744.4 gi|557694215|ref|YP_008797269.1| - 1.8 8.5 13.7 4 7.4 9.5 1.5 1 0 0 1 1 1 0 JNK_SAPK-associated protein-1 MAT1 PF06391.8 gi|557694215|ref|YP_008797269.1| - 1.8 8.0 11.6 3.4 7.1 8.1 1.3 1 0 0 1 1 1 0 CDK-activating kinase assembly factor MAT1 DUF745 PF05335.8 gi|557694215|ref|YP_008797269.1| - 2.1 7.8 14.7 3.6 7.0 10.2 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF745) TMF_TATA_bd PF12325.3 gi|557694215|ref|YP_008797269.1| - 2.2 8.0 19.7 17 5.1 13.0 2.3 1 1 1 2 2 2 0 TATA element modulatory factor 1 TATA binding Rootletin PF15035.1 gi|557694215|ref|YP_008797269.1| - 2.2 8.1 19.4 0.83 9.6 11.5 1.7 2 0 0 2 2 1 0 Ciliary rootlet component, centrosome cohesion HR1 PF02185.11 gi|557694215|ref|YP_008797269.1| - 2.2 8.0 18.8 0.34 10.6 6.4 2.5 1 1 1 2 2 2 0 Hr1 repeat NuA4 PF09340.5 gi|557694215|ref|YP_008797269.1| - 2.4 7.8 6.0 4.3 7.0 0.4 2.5 2 0 0 2 2 2 0 Histone acetyltransferase subunit NuA4 DivIVA PF05103.8 gi|557694215|ref|YP_008797269.1| - 2.6 8.1 18.0 21 5.1 2.1 2.4 1 1 1 2 2 2 0 DivIVA protein IncA PF04156.9 gi|557694215|ref|YP_008797269.1| - 2.6 7.6 26.3 0.75 9.3 16.0 1.8 1 1 0 1 1 1 0 IncA protein Tnp_P_element PF12017.3 gi|557694215|ref|YP_008797269.1| - 2.6 7.1 9.1 1.4 8.0 1.2 2.3 1 1 1 2 2 2 0 Transposase protein Occludin_ELL PF07303.8 gi|557694215|ref|YP_008797269.1| - 2.7 8.7 9.9 3.6 8.3 2.3 2.6 1 1 1 2 2 2 0 Occludin homology domain bZIP_2 PF07716.10 gi|557694215|ref|YP_008797269.1| - 2.8 7.8 23.2 1.7 8.5 2.2 3.6 2 1 1 3 3 3 0 Basic region leucine zipper DUF1664 PF07889.7 gi|557694215|ref|YP_008797269.1| - 3.7 7.3 10.2 1.3 8.7 2.4 2.4 1 1 0 2 2 2 0 Protein of unknown function (DUF1664) Phlebovirus_NSM PF07246.6 gi|557694215|ref|YP_008797269.1| - 3.8 6.6 9.3 8 5.5 6.5 1.4 1 1 0 1 1 1 0 Phlebovirus nonstructural protein NS-M Exonuc_VII_L PF02601.10 gi|557694215|ref|YP_008797269.1| - 3.9 6.5 8.9 6.8 5.7 6.2 1.3 1 0 0 1 1 1 0 Exonuclease VII, large subunit Nup54 PF13874.1 gi|557694215|ref|YP_008797269.1| - 4.9 6.8 19.0 25 4.5 13.2 2.0 1 1 0 1 1 1 0 Nucleoporin complex subunit 54 DUF2203 PF09969.4 gi|557694215|ref|YP_008797269.1| - 5.2 7.3 12.5 66 3.7 8.1 2.6 2 1 0 2 2 1 0 Uncharacterized conserved protein (DUF2203) FliJ PF02050.11 gi|557694215|ref|YP_008797269.1| - 6.6 6.8 22.6 11 6.0 14.1 2.5 2 1 0 2 2 1 0 Flagellar FliJ protein Syntaxin PF00804.20 gi|557694215|ref|YP_008797269.1| - 6.7 6.9 15.2 43 4.3 10.6 2.1 1 1 0 1 1 1 0 Syntaxin DUF2935 PF11155.3 gi|557694215|ref|YP_008797269.1| - 7.7 6.6 6.7 1.2e+02 2.7 4.6 2.4 1 1 0 1 1 1 0 Domain of unknown function (DUF2935) Syntaxin_2 PF14523.1 gi|557694215|ref|YP_008797269.1| - 7.9 6.5 12.4 17 5.5 8.6 1.5 1 0 0 1 1 1 0 Syntaxin-like protein BRE1 PF08647.6 gi|557694215|ref|YP_008797269.1| - 8.7 6.3 18.6 3.2 7.7 10.8 1.9 2 1 0 2 2 1 0 BRE1 E3 ubiquitin ligase HTH_3 PF01381.17 gi|557694216|ref|YP_008797270.1| - 1.1e-10 41.2 0.6 1.6e-10 40.6 0.4 1.3 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.1 gi|557694216|ref|YP_008797270.1| - 1.7e-09 37.7 0.0 2.3e-09 37.3 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_19 PF12844.2 gi|557694216|ref|YP_008797270.1| - 1.8e-09 37.5 0.1 2.7e-09 36.9 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_25 PF13413.1 gi|557694216|ref|YP_008797270.1| - 5.9e-05 22.6 0.1 0.00012 21.6 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain Latrotoxin_C PF15658.1 gi|557694216|ref|YP_008797270.1| - 0.003 17.3 0.5 0.013 15.3 0.4 1.8 1 1 0 1 1 1 1 Latrotoxin C-terminal domain MCR_C PF04609.7 gi|557694216|ref|YP_008797270.1| - 0.0098 14.7 0.1 0.011 14.5 0.1 1.1 1 0 0 1 1 1 1 Methyl-coenzyme M reductase operon protein C HTH_37 PF13744.1 gi|557694216|ref|YP_008797270.1| - 0.023 14.5 0.1 0.053 13.3 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain FlgN PF05130.7 gi|557694216|ref|YP_008797270.1| - 0.12 12.5 1.6 0.16 12.1 1.1 1.3 1 1 0 1 1 1 0 FlgN protein EMG1 PF03587.9 gi|557694217|ref|YP_008797271.1| - 2e-51 174.1 0.0 2.2e-51 174.0 0.0 1.0 1 0 0 1 1 1 1 EMG1/NEP1 methyltransferase Rpr2 PF04032.11 gi|557694218|ref|YP_008797272.1| - 2e-13 49.9 0.2 2.4e-13 49.7 0.2 1.1 1 0 0 1 1 1 1 RNAse P Rpr2/Rpp21/SNM1 subunit domain DZR PF12773.2 gi|557694218|ref|YP_008797272.1| - 0.00033 20.4 0.1 0.00052 19.7 0.1 1.3 1 0 0 1 1 1 1 Double zinc ribbon Zn_Tnp_IS1595 PF12760.2 gi|557694218|ref|YP_008797272.1| - 0.0058 16.4 2.5 0.044 13.5 0.4 2.3 2 0 0 2 2 2 1 Transposase zinc-ribbon domain DNA_RNApol_7kD PF03604.8 gi|557694218|ref|YP_008797272.1| - 0.0058 16.0 1.9 0.095 12.1 0.3 2.5 2 0 0 2 2 2 1 DNA directed RNA polymerase, 7 kDa subunit zf-ribbon_3 PF13248.1 gi|557694218|ref|YP_008797272.1| - 0.0089 15.2 2.0 0.37 10.0 0.1 2.3 2 0 0 2 2 2 1 zinc-ribbon domain RNHCP PF12647.2 gi|557694218|ref|YP_008797272.1| - 0.015 15.0 2.2 0.044 13.6 1.4 1.8 1 1 1 2 2 2 0 RNHCP domain GFA PF04828.9 gi|557694218|ref|YP_008797272.1| - 0.019 14.9 2.5 0.093 12.6 0.1 2.1 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme zinc_ribbon_5 PF13719.1 gi|557694218|ref|YP_008797272.1| - 0.04 13.5 7.4 0.077 12.5 0.7 2.4 2 0 0 2 2 2 0 zinc-ribbon domain HypA PF01155.14 gi|557694218|ref|YP_008797272.1| - 0.045 13.4 1.2 0.19 11.4 0.8 1.9 1 1 0 1 1 1 0 Hydrogenase expression/synthesis hypA family Nudix_N_2 PF14803.1 gi|557694218|ref|YP_008797272.1| - 0.095 12.4 3.0 1.2 8.8 0.2 2.6 2 0 0 2 2 2 0 Nudix N-terminal zinc_ribbon_2 PF13240.1 gi|557694218|ref|YP_008797272.1| - 0.1 12.1 6.2 0.52 9.8 0.2 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|557694218|ref|YP_008797272.1| - 0.12 12.1 1.5 0.12 12.1 1.0 2.4 2 0 0 2 2 2 0 zinc-ribbon domain IBR PF01485.16 gi|557694218|ref|YP_008797272.1| - 0.21 11.4 3.8 2.1 8.2 0.1 2.3 1 1 1 2 2 2 0 IBR domain DUF35_N PF12172.3 gi|557694218|ref|YP_008797272.1| - 0.26 11.2 4.3 2.5 8.1 0.1 2.4 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zf-CCHC_3 PF13917.1 gi|557694218|ref|YP_008797272.1| - 0.41 10.4 2.8 9.6 6.0 0.1 2.3 2 0 0 2 2 2 0 Zinc knuckle NOB1_Zn_bind PF08772.6 gi|557694218|ref|YP_008797272.1| - 0.73 9.7 4.3 3.6 7.4 2.9 2.1 1 1 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like DUF2082 PF09855.4 gi|557694218|ref|YP_008797272.1| - 0.75 9.6 2.6 5.1 7.0 1.8 2.1 1 1 0 1 1 1 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) UPF0547 PF10571.4 gi|557694218|ref|YP_008797272.1| - 0.98 9.1 5.0 10 5.9 0.4 2.3 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 TFIIS_C PF01096.13 gi|557694218|ref|YP_008797272.1| - 1.3 8.6 6.0 1.3 8.6 0.2 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) FYVE PF01363.16 gi|557694218|ref|YP_008797272.1| - 2.1 8.2 6.5 5.1 7.0 4.5 1.6 1 1 0 1 1 1 0 FYVE zinc finger CpXC PF14353.1 gi|557694218|ref|YP_008797272.1| - 3.9 7.4 4.9 26 4.8 0.8 2.7 2 1 0 2 2 2 0 CpXC protein DUF4379 PF14311.1 gi|557694218|ref|YP_008797272.1| - 5.3 6.9 7.2 1.8e+02 2.0 0.0 3.1 2 1 1 3 3 3 0 Domain of unknown function (DUF4379) RecR PF02132.10 gi|557694218|ref|YP_008797272.1| - 7.6 6.0 6.1 19 4.8 0.5 2.8 3 0 0 3 3 3 0 RecR protein Ribosomal_S19e PF01090.14 gi|557694219|ref|YP_008797273.1| - 2.6e-51 172.7 0.0 2.9e-51 172.5 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S19e HTH_12 PF08461.5 gi|557694219|ref|YP_008797273.1| - 0.0038 16.9 0.0 0.0098 15.5 0.0 1.6 2 0 0 2 2 2 1 Ribonuclease R winged-helix domain HTH_45 PF14947.1 gi|557694219|ref|YP_008797273.1| - 0.0075 16.0 0.0 0.012 15.3 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix Pribosyltran PF00156.22 gi|557694220|ref|YP_008797274.1| - 2.8e-21 75.5 1.3 5.5e-21 74.5 0.9 1.4 1 0 0 1 1 1 1 Phosphoribosyl transferase domain PRTase_2 PF15609.1 gi|557694220|ref|YP_008797274.1| - 0.00032 20.0 0.0 0.026 13.8 0.0 2.5 1 1 2 3 3 3 2 Phosphoribosyl transferase UPRTase PF14681.1 gi|557694220|ref|YP_008797274.1| - 0.0031 16.7 0.2 0.0044 16.2 0.1 1.3 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase DUF4510 PF14971.1 gi|557694220|ref|YP_008797274.1| - 0.06 13.5 0.0 0.23 11.6 0.0 1.9 1 1 1 2 2 2 0 Domain of unknown function (DUF4510) Spermine_synth PF01564.12 gi|557694221|ref|YP_008797275.1| - 1.2e-14 53.8 0.0 2e-14 53.1 0.0 1.2 1 0 0 1 1 1 1 Spermine/spermidine synthase Methyltransf_30 PF05430.6 gi|557694221|ref|YP_008797275.1| - 0.00018 21.2 0.0 0.00033 20.3 0.0 1.4 1 0 0 1 1 1 1 S-adenosyl-L-methionine-dependent methyltransferase Methyltransf_26 PF13659.1 gi|557694221|ref|YP_008797275.1| - 0.0003 20.8 0.1 0.00089 19.2 0.0 2.0 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|557694221|ref|YP_008797275.1| - 0.0053 17.3 0.0 0.013 16.1 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|557694221|ref|YP_008797275.1| - 0.012 16.1 0.0 0.022 15.2 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain Laminin_G_3 PF13385.1 gi|557694221|ref|YP_008797275.1| - 0.033 14.4 0.0 0.06 13.5 0.0 1.3 1 0 0 1 1 1 0 Concanavalin A-like lectin/glucanases superfamily Methyltransf_3 PF01596.12 gi|557694221|ref|YP_008797275.1| - 0.12 11.3 0.0 0.19 10.7 0.0 1.2 1 0 0 1 1 1 0 O-methyltransferase Zn-ribbon_8 PF09723.5 gi|557694222|ref|YP_008797276.1| - 0.00084 19.2 0.9 0.0014 18.5 0.6 1.4 1 0 0 1 1 1 1 Zinc ribbon domain zf-C2H2 PF00096.21 gi|557694222|ref|YP_008797276.1| - 0.0078 16.5 2.3 0.24 11.8 0.1 2.3 2 0 0 2 2 2 1 Zinc finger, C2H2 type SprT-like PF10263.4 gi|557694222|ref|YP_008797276.1| - 0.0088 15.7 0.4 0.01 15.5 0.3 1.1 1 0 0 1 1 1 1 SprT-like family TF_Zn_Ribbon PF08271.7 gi|557694222|ref|YP_008797276.1| - 0.021 14.1 2.4 0.47 9.8 0.0 2.2 1 1 0 1 1 1 0 TFIIB zinc-binding zf-C2HC5 PF06221.8 gi|557694222|ref|YP_008797276.1| - 0.025 14.3 0.1 0.033 13.9 0.1 1.2 1 0 0 1 1 1 0 Putative zinc finger motif, C2HC5-type zf-C2H2_4 PF13894.1 gi|557694222|ref|YP_008797276.1| - 0.054 13.8 0.6 7.7 7.1 0.1 2.2 2 0 0 2 2 2 0 C2H2-type zinc finger Zn_Tnp_IS1595 PF12760.2 gi|557694222|ref|YP_008797276.1| - 0.083 12.7 0.7 2.9 7.7 0.1 2.2 2 0 0 2 2 2 0 Transposase zinc-ribbon domain zf-MYND PF01753.13 gi|557694222|ref|YP_008797276.1| - 0.24 11.3 1.5 0.36 10.7 1.0 1.3 1 0 0 1 1 1 0 MYND finger zf-H2C2_2 PF13465.1 gi|557694222|ref|YP_008797276.1| - 0.5 10.7 0.2 0.5 10.7 0.2 2.2 1 1 1 2 2 2 0 Zinc-finger double domain zf-C2HC_2 PF13913.1 gi|557694222|ref|YP_008797276.1| - 0.88 9.3 0.1 0.88 9.3 0.1 2.1 2 0 0 2 2 2 0 zinc-finger of a C2HC-type HTH_17 PF12728.2 gi|557694223|ref|YP_008797277.1| - 2.8e-12 46.6 4.6 6.6e-12 45.5 0.4 3.1 4 0 0 4 4 4 1 Helix-turn-helix domain MerR_1 PF13411.1 gi|557694223|ref|YP_008797277.1| - 2.2e-06 27.3 0.2 5.3e-06 26.1 0.1 1.7 1 0 0 1 1 1 1 MerR HTH family regulatory protein MerR PF00376.18 gi|557694223|ref|YP_008797277.1| - 1.3e-05 24.6 0.2 2.7e-05 23.6 0.1 1.6 1 0 0 1 1 1 1 MerR family regulatory protein HTH_23 PF13384.1 gi|557694223|ref|YP_008797277.1| - 9e-05 21.9 0.2 0.00032 20.2 0.1 1.9 1 0 0 1 1 1 1 Homeodomain-like domain HTH_28 PF13518.1 gi|557694223|ref|YP_008797277.1| - 0.0027 17.6 0.2 0.011 15.7 0.1 2.1 1 1 0 1 1 1 1 Helix-turn-helix domain Sigma70_r4_2 PF08281.7 gi|557694223|ref|YP_008797277.1| - 0.0052 16.2 0.0 0.059 12.8 0.0 2.6 2 0 0 2 2 2 1 Sigma-70, region 4 Sigma70_r4 PF04545.11 gi|557694223|ref|YP_008797277.1| - 0.018 14.3 1.8 0.57 9.5 0.0 3.0 3 0 0 3 3 3 0 Sigma-70, region 4 DUF3853 PF12964.2 gi|557694223|ref|YP_008797277.1| - 0.02 14.6 0.0 0.059 13.1 0.0 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF3853) DDRGK PF09756.4 gi|557694223|ref|YP_008797277.1| - 0.032 13.6 0.1 0.054 12.9 0.0 1.3 1 0 0 1 1 1 0 DDRGK domain HTH_29 PF13551.1 gi|557694223|ref|YP_008797277.1| - 0.056 13.6 0.1 0.14 12.2 0.1 1.7 1 0 0 1 1 1 0 Winged helix-turn helix DUF1323 PF07037.6 gi|557694223|ref|YP_008797277.1| - 0.079 13.1 0.0 0.13 12.4 0.0 1.5 1 0 0 1 1 1 0 Putative transcription regulator (DUF1323) MS_channel PF00924.13 gi|557694224|ref|YP_008797278.1| - 1.5e-12 47.3 0.1 1.9e-12 46.9 0.0 1.2 1 0 0 1 1 1 1 Mechanosensitive ion channel Nucleoporin2 PF04096.9 gi|557694225|ref|YP_008797279.1| - 0.043 13.6 0.3 0.083 12.7 0.2 1.6 1 0 0 1 1 1 0 Nucleoporin autopeptidase Biotin_lipoyl PF00364.17 gi|557694226|ref|YP_008797280.1| - 9.8e-21 73.1 3.8 1.1e-20 73.0 2.6 1.1 1 0 0 1 1 1 1 Biotin-requiring enzyme Biotin_lipoyl_2 PF13533.1 gi|557694226|ref|YP_008797280.1| - 4.9e-09 35.7 4.4 1.5e-05 24.5 0.3 2.1 1 1 1 2 2 2 2 Biotin-lipoyl like HlyD PF00529.15 gi|557694226|ref|YP_008797280.1| - 5.7e-06 25.8 4.4 0.00087 18.6 0.5 2.0 2 0 0 2 2 2 2 HlyD family secretion protein HlyD_3 PF13437.1 gi|557694226|ref|YP_008797280.1| - 7.5e-06 26.2 1.4 0.0056 17.0 0.2 2.0 1 1 1 2 2 2 2 HlyD family secretion protein GCV_H PF01597.14 gi|557694226|ref|YP_008797280.1| - 2.9e-05 23.7 7.0 5.1e-05 22.9 1.8 2.0 1 1 1 2 2 2 2 Glycine cleavage H-protein RnfC_N PF13375.1 gi|557694226|ref|YP_008797280.1| - 5.2e-05 22.8 2.7 0.0016 18.1 0.3 2.0 1 1 1 2 2 2 2 RnfC Barrel sandwich hybrid domain HlyD_2 PF12700.2 gi|557694226|ref|YP_008797280.1| - 0.00025 20.3 3.8 0.052 12.6 0.6 2.0 1 1 1 2 2 2 2 HlyD family secretion protein PYNP_C PF07831.8 gi|557694226|ref|YP_008797280.1| - 0.00096 18.5 1.5 0.37 10.2 0.1 2.2 1 1 1 2 2 2 2 Pyrimidine nucleoside phosphorylase C-terminal domain DUF2118 PF09891.4 gi|557694226|ref|YP_008797280.1| - 0.0015 18.2 2.1 0.013 15.1 0.3 2.0 1 1 1 2 2 2 2 Uncharacterized protein conserved in archaea (DUF2118) Peptidase_M23 PF01551.17 gi|557694226|ref|YP_008797280.1| - 0.0079 16.2 0.8 0.29 11.1 0.5 2.1 1 1 0 1 1 1 1 Peptidase family M23 NQRA PF05896.6 gi|557694226|ref|YP_008797280.1| - 0.078 12.1 1.8 0.13 11.4 1.2 1.4 1 1 0 1 1 1 0 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) QRPTase_N PF02749.11 gi|557694226|ref|YP_008797280.1| - 0.08 12.7 1.0 2.7 7.8 0.1 2.1 1 1 1 2 2 2 0 Quinolinate phosphoribosyl transferase, N-terminal domain Transket_pyr PF02779.19 gi|557694227|ref|YP_008797281.1| - 1.9e-44 151.2 0.0 2.7e-44 150.7 0.0 1.2 1 0 0 1 1 1 1 Transketolase, pyrimidine binding domain Transketolase_C PF02780.15 gi|557694227|ref|YP_008797281.1| - 2e-37 127.8 2.1 1e-36 125.6 0.5 2.5 3 0 0 3 3 3 1 Transketolase, C-terminal domain DUF77 PF01910.12 gi|557694227|ref|YP_008797281.1| - 0.0086 15.7 0.6 0.022 14.4 0.4 1.7 1 0 0 1 1 1 1 Domain of unknown function DUF77 FMN_red PF03358.10 gi|557694227|ref|YP_008797281.1| - 0.045 13.2 0.1 4.1 6.8 0.0 3.2 2 2 1 4 4 4 0 NADPH-dependent FMN reductase E1_dh PF00676.15 gi|557694228|ref|YP_008797282.1| - 3.8e-81 272.0 0.0 4.3e-81 271.9 0.0 1.0 1 0 0 1 1 1 1 Dehydrogenase E1 component TPP_enzyme_C PF02775.16 gi|557694228|ref|YP_008797282.1| - 2.6e-07 30.3 0.1 1.8e-06 27.5 0.1 2.2 1 1 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Transketolase_N PF00456.16 gi|557694228|ref|YP_008797282.1| - 2.2e-05 23.4 0.0 3.2e-05 22.9 0.0 1.3 1 0 0 1 1 1 1 Transketolase, thiamine diphosphate binding domain DXP_synthase_N PF13292.1 gi|557694228|ref|YP_008797282.1| - 0.00082 18.3 0.0 0.0022 16.9 0.0 1.7 1 1 0 1 1 1 1 1-deoxy-D-xylulose-5-phosphate synthase Microvir_H PF04687.7 gi|557694228|ref|YP_008797282.1| - 0.091 11.7 0.0 0.13 11.2 0.0 1.2 1 0 0 1 1 1 0 Microvirus H protein (pilot protein) Epimerase PF01370.16 gi|557694229|ref|YP_008797283.1| - 4e-51 173.7 0.0 4.9e-51 173.4 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|557694229|ref|YP_008797283.1| - 1e-28 99.8 0.0 1.3e-28 99.4 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.12 gi|557694229|ref|YP_008797283.1| - 2.1e-26 92.4 0.0 2.7e-26 92.1 0.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain Polysacc_synt_2 PF02719.10 gi|557694229|ref|YP_008797283.1| - 1.4e-25 89.7 0.0 5e-25 88.0 0.0 1.7 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.7 gi|557694229|ref|YP_008797283.1| - 3.1e-20 72.1 0.2 9.2e-15 54.2 0.0 2.8 3 0 0 3 3 3 2 Male sterility protein NAD_binding_10 PF13460.1 gi|557694229|ref|YP_008797283.1| - 3.9e-16 59.5 0.1 1.1e-15 58.1 0.0 1.7 2 0 0 2 2 2 1 NADH(P)-binding adh_short PF00106.20 gi|557694229|ref|YP_008797283.1| - 1.5e-09 37.9 0.9 9.5e-09 35.3 0.6 2.2 1 1 0 1 1 1 1 short chain dehydrogenase KR PF08659.5 gi|557694229|ref|YP_008797283.1| - 7.8e-05 22.4 0.8 0.38 10.3 0.1 3.0 3 0 0 3 3 3 2 KR domain NmrA PF05368.8 gi|557694229|ref|YP_008797283.1| - 0.0002 20.6 0.1 0.029 13.6 0.0 2.3 2 0 0 2 2 2 2 NmrA-like family Epimerase_Csub PF13950.1 gi|557694229|ref|YP_008797283.1| - 0.00063 19.6 0.0 0.0012 18.7 0.0 1.4 1 0 0 1 1 1 1 UDP-glucose 4-epimerase C-term subunit Glycos_transf_1 PF00534.15 gi|557694230|ref|YP_008797284.1| - 1.1e-38 132.3 0.6 1.7e-38 131.7 0.1 1.4 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|557694230|ref|YP_008797284.1| - 4.3e-24 85.1 0.2 1.7e-23 83.2 0.0 2.0 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|557694230|ref|YP_008797284.1| - 1.9e-16 60.0 0.0 5.4e-16 58.6 0.0 1.8 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|557694230|ref|YP_008797284.1| - 4.5e-12 46.4 12.0 2.9e-10 40.5 6.8 3.0 2 2 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.1 gi|557694230|ref|YP_008797284.1| - 3.1e-09 36.8 3.9 2.1e-08 34.1 2.7 2.3 1 1 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_transf_20 PF00982.16 gi|557694230|ref|YP_008797284.1| - 0.00064 18.3 0.0 0.0011 17.5 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase family 20 Glyco_transf_5 PF08323.6 gi|557694230|ref|YP_008797284.1| - 0.0042 16.6 2.0 0.69 9.3 0.4 2.4 1 1 0 2 2 2 2 Starch synthase catalytic domain PhdYeFM_antitox PF02604.14 gi|557694230|ref|YP_008797284.1| - 0.021 14.3 0.1 0.047 13.2 0.0 1.6 1 0 0 1 1 1 0 Antitoxin Phd_YefM, type II toxin-antitoxin system Glyco_trans_1_3 PF13528.1 gi|557694230|ref|YP_008797284.1| - 0.077 12.1 0.0 0.11 11.6 0.0 1.3 1 0 0 1 1 1 0 Glycosyl transferase family 1 Glyco_transf_90 PF05686.7 gi|557694230|ref|YP_008797284.1| - 0.16 10.6 0.0 0.24 10.0 0.0 1.2 1 0 0 1 1 1 0 Glycosyl transferase family 90 Ribosomal_S17e PF00833.13 gi|557694231|ref|YP_008797285.1| - 3.2e-07 30.1 0.1 3.4e-07 30.0 0.1 1.1 1 0 0 1 1 1 1 Ribosomal S17 Rifin_STEVOR PF02009.11 gi|557694232|ref|YP_008797286.1| - 0.032 13.8 0.0 0.032 13.8 0.0 1.7 2 0 0 2 2 2 0 Rifin/stevor family XPG_I PF00867.13 gi|557694233|ref|YP_008797287.1| - 2.1e-26 91.8 0.0 3.8e-26 90.9 0.0 1.5 1 0 0 1 1 1 1 XPG I-region XPG_N PF00752.12 gi|557694233|ref|YP_008797287.1| - 4.6e-17 62.1 0.0 7.8e-17 61.3 0.0 1.4 1 0 0 1 1 1 1 XPG N-terminal domain 5_3_exonuc PF01367.15 gi|557694233|ref|YP_008797287.1| - 2.5e-06 27.6 0.0 5.1e-06 26.6 0.0 1.5 1 0 0 1 1 1 1 5'-3' exonuclease, C-terminal SAM fold HHH_5 PF14520.1 gi|557694233|ref|YP_008797287.1| - 0.0064 16.6 0.1 0.023 14.8 0.0 2.1 2 0 0 2 2 2 1 Helix-hairpin-helix domain HHH_2 PF12826.2 gi|557694233|ref|YP_008797287.1| - 0.025 14.4 0.1 0.35 10.7 0.0 2.5 2 0 0 2 2 2 0 Helix-hairpin-helix motif AAA PF00004.24 gi|557694234|ref|YP_008797288.1| - 4.9e-100 330.9 0.0 1e-49 168.1 0.0 2.6 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) CDC48_N PF02359.13 gi|557694234|ref|YP_008797288.1| - 1.3e-27 95.5 0.4 7.4e-27 93.1 0.5 2.2 2 0 0 2 2 1 1 Cell division protein 48 (CDC48), N-terminal domain AAA_16 PF13191.1 gi|557694234|ref|YP_008797288.1| - 9.2e-18 64.8 0.0 6.9e-08 32.6 0.0 2.5 2 0 0 2 2 2 2 AAA ATPase domain AAA_2 PF07724.9 gi|557694234|ref|YP_008797288.1| - 3e-16 59.8 0.0 1.9e-08 34.4 0.0 2.4 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) RuvB_N PF05496.7 gi|557694234|ref|YP_008797288.1| - 7e-16 57.9 0.0 1.2e-07 30.9 0.0 2.9 2 1 0 2 2 2 2 Holliday junction DNA helicase ruvB N-terminus AAA_14 PF13173.1 gi|557694234|ref|YP_008797288.1| - 1.4e-14 54.1 0.0 4.3e-07 29.8 0.0 2.4 2 0 0 2 2 2 2 AAA domain AAA_22 PF13401.1 gi|557694234|ref|YP_008797288.1| - 1.3e-13 51.2 0.2 0.0001 22.4 0.0 4.1 2 2 0 2 2 2 2 AAA domain AAA_5 PF07728.9 gi|557694234|ref|YP_008797288.1| - 6.5e-13 48.6 0.1 9.9e-05 22.0 0.0 3.9 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) TIP49 PF06068.8 gi|557694234|ref|YP_008797288.1| - 7.7e-12 44.6 0.0 3.2e-05 22.8 0.0 2.5 2 0 0 2 2 2 2 TIP49 C-terminus AAA_17 PF13207.1 gi|557694234|ref|YP_008797288.1| - 1.8e-11 44.8 0.1 7.7e-05 23.4 0.0 3.3 3 0 0 3 3 3 2 AAA domain Zeta_toxin PF06414.7 gi|557694234|ref|YP_008797288.1| - 4.9e-11 42.1 0.0 5.7e-05 22.3 0.0 2.4 2 0 0 2 2 2 2 Zeta toxin AAA_33 PF13671.1 gi|557694234|ref|YP_008797288.1| - 2.9e-10 40.1 0.0 0.00042 20.2 0.0 2.5 2 0 0 2 2 2 2 AAA domain RNA_helicase PF00910.17 gi|557694234|ref|YP_008797288.1| - 6.9e-09 35.8 0.0 0.0067 16.5 0.0 2.8 2 0 0 2 2 2 2 RNA helicase IstB_IS21 PF01695.12 gi|557694234|ref|YP_008797288.1| - 2.5e-08 33.5 0.2 0.005 16.2 0.0 2.8 3 0 0 3 3 2 2 IstB-like ATP binding protein Arch_ATPase PF01637.13 gi|557694234|ref|YP_008797288.1| - 3.8e-08 33.3 0.1 0.0067 16.1 0.0 3.3 2 1 0 2 2 2 2 Archaeal ATPase ABC_tran PF00005.22 gi|557694234|ref|YP_008797288.1| - 1.1e-07 32.2 0.0 0.0079 16.5 0.0 2.5 2 0 0 2 2 2 2 ABC transporter AAA_28 PF13521.1 gi|557694234|ref|YP_008797288.1| - 1.5e-07 31.5 0.0 0.011 15.6 0.0 2.7 2 0 0 2 2 2 2 AAA domain Mg_chelatase PF01078.16 gi|557694234|ref|YP_008797288.1| - 3e-07 29.8 0.3 0.027 13.6 0.0 2.5 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_19 PF13245.1 gi|557694234|ref|YP_008797288.1| - 4.1e-07 29.6 0.8 0.035 13.8 0.0 2.9 2 0 0 2 2 2 2 Part of AAA domain AAA_25 PF13481.1 gi|557694234|ref|YP_008797288.1| - 1.2e-06 28.0 7.5 0.15 11.4 0.7 4.3 2 2 1 3 3 3 2 AAA domain NACHT PF05729.7 gi|557694234|ref|YP_008797288.1| - 1.6e-06 27.8 0.0 0.12 12.0 0.0 3.4 4 0 0 4 4 3 2 NACHT domain AAA_18 PF13238.1 gi|557694234|ref|YP_008797288.1| - 2.1e-06 28.0 0.1 0.07 13.4 0.0 3.2 3 0 0 3 3 2 2 AAA domain Sigma54_activ_2 PF14532.1 gi|557694234|ref|YP_008797288.1| - 3e-06 27.3 0.0 0.053 13.5 0.0 2.4 2 0 0 2 2 2 2 Sigma-54 interaction domain AAA_24 PF13479.1 gi|557694234|ref|YP_008797288.1| - 5.9e-06 26.0 0.2 0.14 11.7 0.0 2.5 2 0 0 2 2 2 2 AAA domain KaiC PF06745.8 gi|557694234|ref|YP_008797288.1| - 6.4e-06 25.4 0.1 0.18 10.8 0.0 3.3 2 1 1 3 3 3 2 KaiC CDC48_2 PF02933.12 gi|557694234|ref|YP_008797288.1| - 7.1e-06 25.5 0.5 2.1e-05 24.0 0.4 1.8 1 0 0 1 1 1 1 Cell division protein 48 (CDC48), domain 2 Sigma54_activat PF00158.21 gi|557694234|ref|YP_008797288.1| - 1.1e-05 25.0 0.0 0.36 10.3 0.0 3.5 2 2 0 2 2 2 2 Sigma-54 interaction domain DAP3 PF10236.4 gi|557694234|ref|YP_008797288.1| - 1.8e-05 23.8 0.0 0.071 12.0 0.0 2.5 2 1 0 2 2 2 2 Mitochondrial ribosomal death-associated protein 3 DUF815 PF05673.8 gi|557694234|ref|YP_008797288.1| - 2.1e-05 23.5 0.0 0.11 11.4 0.0 2.5 2 0 0 2 2 2 2 Protein of unknown function (DUF815) NB-ARC PF00931.17 gi|557694234|ref|YP_008797288.1| - 2.2e-05 23.4 0.0 0.19 10.5 0.0 2.4 2 0 0 2 2 2 2 NB-ARC domain Viral_helicase1 PF01443.13 gi|557694234|ref|YP_008797288.1| - 6.4e-05 22.5 0.0 0.041 13.4 0.0 2.3 2 0 0 2 2 2 1 Viral (Superfamily 1) RNA helicase PhoH PF02562.11 gi|557694234|ref|YP_008797288.1| - 9.6e-05 21.7 0.2 0.4 9.8 0.0 2.5 2 0 0 2 2 2 2 PhoH-like protein Bac_DnaA PF00308.13 gi|557694234|ref|YP_008797288.1| - 0.00014 21.5 0.0 0.16 11.5 0.0 2.5 2 0 0 2 2 2 1 Bacterial dnaA protein AAA_3 PF07726.6 gi|557694234|ref|YP_008797288.1| - 0.00021 20.8 0.0 0.82 9.2 0.0 2.5 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) ATP-synt_ab PF00006.20 gi|557694234|ref|YP_008797288.1| - 0.00051 19.6 0.0 0.57 9.6 0.0 2.4 2 0 0 2 2 2 2 ATP synthase alpha/beta family, nucleotide-binding domain SKI PF01202.17 gi|557694234|ref|YP_008797288.1| - 0.00065 19.5 0.0 1.1 9.0 0.0 2.5 2 0 0 2 2 2 2 Shikimate kinase Rad17 PF03215.10 gi|557694234|ref|YP_008797288.1| - 0.00089 18.0 0.6 1.3 7.5 0.0 3.0 2 1 1 3 3 3 1 Rad17 cell cycle checkpoint protein Parvo_NS1 PF01057.12 gi|557694234|ref|YP_008797288.1| - 0.001 18.0 0.0 1.1 8.1 0.0 2.2 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 NTPase_1 PF03266.10 gi|557694234|ref|YP_008797288.1| - 0.001 18.7 2.9 5.9 6.5 0.0 4.3 3 2 2 5 5 5 0 NTPase UFD1 PF03152.9 gi|557694234|ref|YP_008797288.1| - 0.0017 17.4 0.0 0.0029 16.7 0.0 1.3 1 0 0 1 1 1 1 Ubiquitin fusion degradation protein UFD1 Vps4_C PF09336.5 gi|557694234|ref|YP_008797288.1| - 0.002 17.9 0.1 0.24 11.3 0.0 3.0 2 1 0 2 2 2 1 Vps4 C terminal oligomerisation domain UPF0079 PF02367.12 gi|557694234|ref|YP_008797288.1| - 0.0021 17.7 0.2 3.2 7.3 0.0 3.0 2 1 1 3 3 3 0 Uncharacterised P-loop hydrolase UPF0079 DUF2075 PF09848.4 gi|557694234|ref|YP_008797288.1| - 0.0023 16.9 0.0 0.28 10.1 0.0 2.3 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2075) ResIII PF04851.10 gi|557694234|ref|YP_008797288.1| - 0.0089 15.8 0.0 1.2 8.9 0.0 2.4 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit KAP_NTPase PF07693.9 gi|557694234|ref|YP_008797288.1| - 0.019 13.9 0.0 7.9 5.3 0.0 3.0 2 1 1 3 3 3 0 KAP family P-loop domain SRPRB PF09439.5 gi|557694234|ref|YP_008797288.1| - 0.031 13.4 0.0 7 5.8 0.0 2.4 2 0 0 2 2 2 0 Signal recognition particle receptor beta subunit PduV-EutP PF10662.4 gi|557694234|ref|YP_008797288.1| - 0.035 13.5 0.0 9.4 5.7 0.0 2.4 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation AFG1_ATPase PF03969.11 gi|557694234|ref|YP_008797288.1| - 0.039 12.7 0.0 7.7 5.2 0.0 2.4 2 0 0 2 2 2 0 AFG1-like ATPase AAA_30 PF13604.1 gi|557694234|ref|YP_008797288.1| - 0.071 12.6 0.0 18 4.8 0.0 2.7 2 1 1 3 3 2 0 AAA domain Baculo_E25 PF05274.6 gi|557694234|ref|YP_008797288.1| - 0.083 12.4 0.1 0.14 11.6 0.1 1.3 1 0 0 1 1 1 0 Occlusion-derived virus envelope protein E25 AAA_29 PF13555.1 gi|557694234|ref|YP_008797288.1| - 0.086 12.3 0.0 18 4.9 0.0 2.4 2 0 0 2 2 2 0 P-loop containing region of AAA domain AAA_10 PF12846.2 gi|557694234|ref|YP_008797288.1| - 0.088 12.2 1.3 19 4.5 0.0 3.2 3 1 1 4 4 3 0 AAA-like domain AAA_23 PF13476.1 gi|557694234|ref|YP_008797288.1| - 0.11 12.7 0.1 28 4.9 0.0 3.0 3 0 0 3 3 2 0 AAA domain AAA_11 PF13086.1 gi|557694234|ref|YP_008797288.1| - 0.11 11.9 0.0 19 4.7 0.0 2.4 2 0 0 2 2 2 0 AAA domain AAA_21 PF13304.1 gi|557694234|ref|YP_008797288.1| - 0.5 10.2 2.4 45 3.8 0.0 3.4 2 2 1 3 3 2 0 AAA domain HTH_20 PF12840.2 gi|557694235|ref|YP_008797289.1| - 2.6e-11 43.1 0.1 3.9e-11 42.5 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|557694235|ref|YP_008797289.1| - 1.9e-05 24.2 0.1 3e-05 23.5 0.1 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family TrmB PF01978.14 gi|557694235|ref|YP_008797289.1| - 0.0014 18.2 0.1 0.0023 17.6 0.1 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.5 gi|557694235|ref|YP_008797289.1| - 0.017 14.6 0.5 0.04 13.5 0.3 1.5 1 0 0 1 1 1 0 IclR helix-turn-helix domain NCD1 PF04904.8 gi|557694235|ref|YP_008797289.1| - 0.027 14.1 0.1 0.25 11.0 0.0 2.1 1 1 1 2 2 2 0 NAB conserved region 1 (NCD1) PAX PF00292.13 gi|557694235|ref|YP_008797289.1| - 0.058 13.1 0.0 0.072 12.8 0.0 1.1 1 0 0 1 1 1 0 'Paired box' domain Rrf2 PF02082.15 gi|557694235|ref|YP_008797289.1| - 0.088 12.9 0.1 0.14 12.3 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator DUF3816 PF12822.2 gi|557694236|ref|YP_008797290.1| - 3e-05 23.9 14.4 3.9e-05 23.5 10.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3816) Rad51 PF08423.6 gi|557694237|ref|YP_008797291.1| - 6e-92 307.1 0.0 7.2e-92 306.9 0.0 1.0 1 0 0 1 1 1 1 Rad51 HHH_5 PF14520.1 gi|557694237|ref|YP_008797291.1| - 2.7e-11 43.4 2.2 4.3e-11 42.8 0.7 1.9 2 0 0 2 2 2 1 Helix-hairpin-helix domain RecA PF00154.16 gi|557694237|ref|YP_008797291.1| - 3.1e-11 42.9 0.1 5.3e-11 42.1 0.0 1.4 1 1 0 1 1 1 1 recA bacterial DNA recombination protein KaiC PF06745.8 gi|557694237|ref|YP_008797291.1| - 1.3e-10 40.7 0.0 2.2e-10 40.0 0.0 1.4 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.1 gi|557694237|ref|YP_008797291.1| - 3.6e-10 39.5 0.0 5.2e-10 39.0 0.0 1.2 1 0 0 1 1 1 1 AAA domain Cdd1 PF11731.3 gi|557694237|ref|YP_008797291.1| - 0.00023 21.0 0.0 0.00044 20.1 0.0 1.5 1 0 0 1 1 1 1 Pathogenicity locus AAA_22 PF13401.1 gi|557694237|ref|YP_008797291.1| - 0.00072 19.7 0.1 0.0014 18.7 0.1 1.4 1 0 0 1 1 1 1 AAA domain ABC_tran PF00005.22 gi|557694237|ref|YP_008797291.1| - 0.0018 18.5 0.0 0.0028 17.9 0.0 1.4 1 0 0 1 1 1 1 ABC transporter DUF4332 PF14229.1 gi|557694237|ref|YP_008797291.1| - 0.017 15.0 0.8 0.038 13.9 0.0 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4332) HHH PF00633.18 gi|557694237|ref|YP_008797291.1| - 0.069 12.8 0.6 0.82 9.4 0.0 2.8 2 1 0 2 2 2 0 Helix-hairpin-helix motif AAA PF00004.24 gi|557694237|ref|YP_008797291.1| - 0.071 13.3 0.1 0.24 11.5 0.0 1.8 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) IMS_HHH PF11798.3 gi|557694237|ref|YP_008797291.1| - 0.096 12.7 0.0 0.33 11.0 0.0 1.9 1 0 0 1 1 1 0 IMS family HHH motif INCENP_ARK-bind PF03941.10 gi|557694237|ref|YP_008797291.1| - 0.13 12.1 0.0 0.29 10.9 0.0 1.5 1 0 0 1 1 1 0 Inner centromere protein, ARK binding region PK PF00224.16 gi|557694238|ref|YP_008797292.1| - 5.3e-81 271.9 0.0 6.7e-81 271.6 0.0 1.1 1 0 0 1 1 1 1 Pyruvate kinase, barrel domain PK_C PF02887.11 gi|557694238|ref|YP_008797292.1| - 2.2e-16 59.4 0.0 6e-16 58.0 0.0 1.7 1 0 0 1 1 1 1 Pyruvate kinase, alpha/beta domain HpcH_HpaI PF03328.9 gi|557694238|ref|YP_008797292.1| - 1.6e-05 23.8 0.6 2.5e-05 23.2 0.4 1.4 1 0 0 1 1 1 1 HpcH/HpaI aldolase/citrate lyase family 3HCDH_N PF02737.13 gi|557694239|ref|YP_008797293.1| - 1.5e-46 158.2 0.0 2.4e-46 157.6 0.0 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 3HCDH PF00725.17 gi|557694239|ref|YP_008797293.1| - 8.9e-23 80.5 0.1 3.2e-22 78.7 0.0 2.0 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NAD_binding_2 PF03446.10 gi|557694239|ref|YP_008797293.1| - 0.0047 16.7 0.0 0.019 14.8 0.0 2.0 2 1 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase DUF362 PF04015.7 gi|557694239|ref|YP_008797293.1| - 0.0092 15.4 0.0 0.018 14.5 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF362) F420_oxidored PF03807.12 gi|557694239|ref|YP_008797293.1| - 0.017 15.5 0.0 0.043 14.2 0.0 1.7 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent 2-Hacid_dh_C PF02826.14 gi|557694239|ref|YP_008797293.1| - 0.1 11.7 0.0 0.18 10.9 0.0 1.3 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_Gly3P_dh_N PF01210.18 gi|557694239|ref|YP_008797293.1| - 0.16 11.7 0.0 0.34 10.6 0.0 1.5 2 0 0 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Bac_luciferase PF00296.15 gi|557694240|ref|YP_008797294.1| - 1.4e-17 63.7 0.4 2.9e-16 59.4 0.3 2.0 1 1 0 1 1 1 1 Luciferase-like monooxygenase ABC2_membrane_3 PF12698.2 gi|557694241|ref|YP_008797295.1| - 3.1e-30 105.4 20.0 4.7e-30 104.7 13.9 1.3 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane PF01061.19 gi|557694241|ref|YP_008797295.1| - 1.2e-28 99.7 22.5 1.5e-24 86.3 13.3 2.3 2 0 0 2 2 2 2 ABC-2 type transporter ABC2_membrane_4 PF12730.2 gi|557694241|ref|YP_008797295.1| - 0.00043 19.5 31.4 0.0017 17.5 21.6 1.9 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC_tran PF00005.22 gi|557694242|ref|YP_008797296.1| - 3.4e-32 111.6 0.0 5e-32 111.0 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|557694242|ref|YP_008797296.1| - 1.2e-15 58.2 0.0 3.3e-10 40.4 0.0 2.1 1 1 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|557694242|ref|YP_008797296.1| - 4.1e-05 22.9 0.0 0.0089 15.2 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_15 PF13175.1 gi|557694242|ref|YP_008797296.1| - 9.6e-05 21.5 0.0 0.0091 15.0 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_16 PF13191.1 gi|557694242|ref|YP_008797296.1| - 0.0033 17.4 0.0 0.011 15.7 0.0 1.7 2 0 0 2 2 2 1 AAA ATPase domain SbcCD_C PF13558.1 gi|557694242|ref|YP_008797296.1| - 0.0065 16.3 0.0 0.054 13.4 0.0 2.2 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_29 PF13555.1 gi|557694242|ref|YP_008797296.1| - 0.012 15.1 0.0 0.021 14.3 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|557694242|ref|YP_008797296.1| - 0.021 15.1 0.3 0.034 14.4 0.2 1.5 1 1 0 1 1 1 0 AAA domain AAA_13 PF13166.1 gi|557694242|ref|YP_008797296.1| - 0.035 12.6 0.0 0.24 9.8 0.0 2.0 2 1 0 2 2 2 0 AAA domain AAA_24 PF13479.1 gi|557694242|ref|YP_008797296.1| - 0.14 11.7 0.5 0.61 9.6 0.1 2.1 2 1 0 2 2 2 0 AAA domain HEPN PF05168.9 gi|557694243|ref|YP_008797297.1| - 1.8e-35 121.4 0.0 2.1e-35 121.1 0.0 1.0 1 0 0 1 1 1 1 HEPN domain PaREP1 PF05942.6 gi|557694243|ref|YP_008797297.1| - 4.2e-05 23.3 0.7 0.00024 20.9 0.5 2.2 1 1 0 1 1 1 1 Archaeal PaREP1/PaREP8 family NTP_transf_2 PF01909.18 gi|557694244|ref|YP_008797298.1| - 4.3e-08 33.3 0.1 5.2e-08 33.1 0.1 1.3 1 1 0 1 1 1 1 Nucleotidyltransferase domain Aconitase_C PF00694.14 gi|557694245|ref|YP_008797299.1| - 1.9e-33 115.3 0.0 2.8e-33 114.8 0.0 1.2 1 0 0 1 1 1 1 Aconitase C-terminal domain Methyltransf_18 PF12847.2 gi|557694246|ref|YP_008797300.1| - 2.7e-12 47.2 0.0 3.5e-12 46.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|557694246|ref|YP_008797300.1| - 3.6e-10 39.6 0.0 3.9e-10 39.5 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|557694246|ref|YP_008797300.1| - 2.5e-09 37.1 0.0 3.2e-09 36.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.15 gi|557694246|ref|YP_008797300.1| - 1.4e-08 34.1 0.0 1.7e-08 33.8 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_25 PF13649.1 gi|557694246|ref|YP_008797300.1| - 4.7e-07 30.1 0.0 6.1e-07 29.7 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.15 gi|557694246|ref|YP_008797300.1| - 1.6e-06 27.3 0.0 1.8e-06 27.2 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_23 PF13489.1 gi|557694246|ref|YP_008797300.1| - 4e-06 26.6 0.0 4.7e-06 26.4 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.8 gi|557694246|ref|YP_008797300.1| - 9.9e-06 24.8 0.0 1.3e-05 24.5 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_11 PF08241.7 gi|557694246|ref|YP_008797300.1| - 2e-05 25.0 0.0 2.7e-05 24.5 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|557694246|ref|YP_008797300.1| - 0.0002 20.7 0.0 0.00026 20.3 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase small domain MetW PF07021.7 gi|557694246|ref|YP_008797300.1| - 0.00028 20.3 0.0 0.00037 19.9 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW UPF0020 PF01170.13 gi|557694246|ref|YP_008797300.1| - 0.00031 20.3 0.0 0.00047 19.7 0.0 1.2 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_12 PF08242.7 gi|557694246|ref|YP_008797300.1| - 0.00083 19.7 0.0 0.001 19.4 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain N6_N4_Mtase PF01555.13 gi|557694246|ref|YP_008797300.1| - 0.00085 18.8 0.0 0.0012 18.4 0.0 1.1 1 0 0 1 1 1 1 DNA methylase Methyltransf_2 PF00891.13 gi|557694246|ref|YP_008797300.1| - 0.00097 18.3 0.0 0.0012 18.1 0.0 1.1 1 0 0 1 1 1 1 O-methyltransferase DOT1 PF08123.8 gi|557694246|ref|YP_008797300.1| - 0.003 16.9 0.0 0.0046 16.2 0.0 1.3 1 0 0 1 1 1 1 Histone methylation protein DOT1 Methyltransf_32 PF13679.1 gi|557694246|ref|YP_008797300.1| - 0.0065 16.1 0.0 0.0072 16.0 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain FmrO PF07091.6 gi|557694246|ref|YP_008797300.1| - 0.0094 14.9 0.0 0.011 14.6 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA methyltransferase (FmrO) Met_10 PF02475.11 gi|557694246|ref|YP_008797300.1| - 0.01 15.4 0.0 0.012 15.2 0.0 1.1 1 0 0 1 1 1 0 Met-10+ like-protein Methyltransf_4 PF02390.12 gi|557694246|ref|YP_008797300.1| - 0.014 14.4 0.0 0.016 14.2 0.0 1.1 1 0 0 1 1 1 0 Putative methyltransferase TehB PF03848.9 gi|557694246|ref|YP_008797300.1| - 0.019 14.1 0.0 0.021 13.9 0.0 1.2 1 0 0 1 1 1 0 Tellurite resistance protein TehB PCMT PF01135.14 gi|557694246|ref|YP_008797300.1| - 0.093 12.2 0.0 0.13 11.8 0.0 1.1 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_9 PF08003.6 gi|557694246|ref|YP_008797300.1| - 0.1 11.3 0.0 0.11 11.1 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1698) IlvN PF07991.7 gi|557694247|ref|YP_008797301.1| - 4.1e-69 231.1 0.0 7e-69 230.4 0.0 1.4 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain IlvC PF01450.14 gi|557694247|ref|YP_008797301.1| - 2e-45 154.3 0.1 2.6e-45 153.8 0.1 1.2 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain NAD_binding_2 PF03446.10 gi|557694247|ref|YP_008797301.1| - 0.0001 22.1 0.0 0.00078 19.3 0.0 2.1 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.12 gi|557694247|ref|YP_008797301.1| - 0.00027 21.2 0.0 0.00062 20.1 0.0 1.7 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent 2-Hacid_dh_C PF02826.14 gi|557694247|ref|YP_008797301.1| - 0.00056 19.1 0.0 0.001 18.2 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AdoHcyase_NAD PF00670.16 gi|557694247|ref|YP_008797301.1| - 0.0018 18.1 0.0 0.0062 16.3 0.0 1.8 2 0 0 2 2 2 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain ACT_5 PF13710.1 gi|557694248|ref|YP_008797302.1| - 0.022 14.5 0.0 0.031 14.0 0.0 1.2 1 0 0 1 1 1 0 ACT domain ACT_4 PF13291.1 gi|557694248|ref|YP_008797302.1| - 0.044 14.1 0.1 0.06 13.6 0.1 1.2 1 0 0 1 1 1 0 ACT domain TPP_enzyme_N PF02776.13 gi|557694249|ref|YP_008797303.1| - 3.4e-59 199.1 0.3 4.2e-57 192.3 0.1 2.4 2 0 0 2 2 2 2 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.16 gi|557694249|ref|YP_008797303.1| - 2e-45 154.1 0.4 2.2e-44 150.6 0.0 2.6 3 0 0 3 3 3 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_M PF00205.17 gi|557694249|ref|YP_008797303.1| - 4.1e-42 143.1 0.5 1e-41 141.8 0.2 1.8 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, central domain HMGL-like PF00682.14 gi|557694250|ref|YP_008797304.1| - 4.6e-75 252.3 1.5 8.3e-75 251.4 1.0 1.4 1 0 0 1 1 1 1 HMGL-like LeuA_dimer PF08502.5 gi|557694250|ref|YP_008797304.1| - 4.9e-11 42.5 0.3 9.5e-11 41.6 0.2 1.5 1 0 0 1 1 1 1 LeuA allosteric (dimerisation) domain Topo-VIb_trans PF09239.6 gi|557694251|ref|YP_008797305.1| - 1.7e-58 196.7 0.0 2.6e-58 196.1 0.0 1.2 1 0 0 1 1 1 1 Topoisomerase VI B subunit, transducer HATPase_c_3 PF13589.1 gi|557694251|ref|YP_008797305.1| - 1.1e-08 34.7 0.0 2e-08 33.9 0.0 1.3 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c PF02518.21 gi|557694251|ref|YP_008797305.1| - 2.9e-07 30.1 0.0 6.4e-07 29.0 0.0 1.6 1 1 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FbpA PF05833.6 gi|557694251|ref|YP_008797305.1| - 1.1e-05 24.1 0.0 2e-05 23.3 0.0 1.3 1 0 0 1 1 1 1 Fibronectin-binding protein A N-terminus (FbpA) Arch_ATPase PF01637.13 gi|557694252|ref|YP_008797306.1| - 3e-24 86.0 0.1 1.2e-23 84.0 0.0 1.9 1 1 0 1 1 1 1 Archaeal ATPase AAA_14 PF13173.1 gi|557694252|ref|YP_008797306.1| - 2e-08 34.1 0.0 8.5e-08 32.1 0.0 2.1 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|557694252|ref|YP_008797306.1| - 1.6e-05 25.0 0.1 8e-05 22.7 0.0 2.1 3 0 0 3 3 3 1 AAA domain AAA_16 PF13191.1 gi|557694252|ref|YP_008797306.1| - 0.0011 18.9 0.8 0.0061 16.5 0.2 2.3 2 1 0 2 2 2 1 AAA ATPase domain Miro PF08477.8 gi|557694252|ref|YP_008797306.1| - 0.012 16.0 0.0 0.027 14.9 0.0 1.6 1 0 0 1 1 1 0 Miro-like protein HTH_45 PF14947.1 gi|557694252|ref|YP_008797306.1| - 0.037 13.8 0.0 0.11 12.3 0.0 1.8 1 0 0 1 1 1 0 Winged helix-turn-helix GIIM PF08388.6 gi|557694252|ref|YP_008797306.1| - 0.097 12.4 0.8 0.49 10.2 0.1 2.4 2 1 0 2 2 2 0 Group II intron, maturase-specific domain 6PGD PF00393.14 gi|557694253|ref|YP_008797307.1| - 2.6e-101 338.6 0.0 3.2e-101 338.3 0.0 1.1 1 0 0 1 1 1 1 6-phosphogluconate dehydrogenase, C-terminal domain NAD_binding_2 PF03446.10 gi|557694253|ref|YP_008797307.1| - 1.7e-49 167.7 0.1 3.4e-49 166.8 0.0 1.5 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.12 gi|557694253|ref|YP_008797307.1| - 1.7e-07 31.5 0.0 5.6e-07 29.9 0.0 1.9 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent Shikimate_DH PF01488.15 gi|557694253|ref|YP_008797307.1| - 2.1e-06 27.8 1.1 3.9e-06 27.0 0.1 1.9 2 1 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase 3HCDH_N PF02737.13 gi|557694253|ref|YP_008797307.1| - 2.9e-06 27.0 0.9 1.1e-05 25.1 0.0 2.4 3 0 0 3 3 3 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ApbA PF02558.11 gi|557694253|ref|YP_008797307.1| - 5.6e-05 22.6 0.0 0.0001 21.7 0.0 1.4 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA NAD_Gly3P_dh_N PF01210.18 gi|557694253|ref|YP_008797307.1| - 0.00023 20.9 0.0 0.0027 17.4 0.0 2.3 2 1 0 2 2 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 2-Hacid_dh_C PF02826.14 gi|557694253|ref|YP_008797307.1| - 0.0016 17.5 0.3 0.0034 16.5 0.0 1.6 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Saccharop_dh PF03435.13 gi|557694253|ref|YP_008797307.1| - 0.0057 15.6 0.0 0.0084 15.1 0.0 1.3 1 0 0 1 1 1 1 Saccharopine dehydrogenase Mannitol_dh PF01232.18 gi|557694253|ref|YP_008797307.1| - 0.054 13.4 0.0 0.2 11.5 0.0 1.9 2 0 0 2 2 2 0 Mannitol dehydrogenase Rossmann domain HTH_5 PF01022.15 gi|557694254|ref|YP_008797308.1| - 8e-16 57.4 0.2 1.2e-15 56.8 0.1 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|557694254|ref|YP_008797308.1| - 2.7e-11 43.1 0.0 4.5e-11 42.3 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.14 gi|557694254|ref|YP_008797308.1| - 2.5e-05 23.8 0.0 4.2e-05 23.1 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|557694254|ref|YP_008797308.1| - 4.6e-05 22.9 0.0 8.3e-05 22.1 0.0 1.4 1 0 0 1 1 1 1 MarR family PaaX PF07848.7 gi|557694254|ref|YP_008797308.1| - 0.00014 21.8 0.0 0.00022 21.1 0.0 1.3 1 0 0 1 1 1 1 PaaX-like protein HTH_IclR PF09339.5 gi|557694254|ref|YP_008797308.1| - 0.00016 21.2 0.1 0.00025 20.5 0.1 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_27 PF13463.1 gi|557694254|ref|YP_008797308.1| - 0.00019 21.6 0.0 0.00029 21.0 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_24 PF13412.1 gi|557694254|ref|YP_008797308.1| - 0.00073 18.8 0.0 0.0015 17.8 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Rrf2 PF02082.15 gi|557694254|ref|YP_008797308.1| - 0.0014 18.7 0.2 0.0021 18.1 0.1 1.4 1 1 0 1 1 1 1 Transcriptional regulator HxlR PF01638.12 gi|557694254|ref|YP_008797308.1| - 0.0021 17.6 0.1 0.0029 17.1 0.1 1.3 1 0 0 1 1 1 1 HxlR-like helix-turn-helix HTH_29 PF13551.1 gi|557694254|ref|YP_008797308.1| - 0.0028 17.7 0.1 0.0037 17.3 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn helix Fe_dep_repress PF01325.14 gi|557694254|ref|YP_008797308.1| - 0.0048 16.8 0.1 0.0078 16.1 0.1 1.3 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain DUF4423 PF14394.1 gi|557694254|ref|YP_008797308.1| - 0.0058 16.1 0.0 0.0068 15.9 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4423) MarR PF01047.17 gi|557694254|ref|YP_008797308.1| - 0.0089 15.7 0.1 0.014 15.0 0.1 1.3 1 0 0 1 1 1 1 MarR family DUF223 PF02721.9 gi|557694254|ref|YP_008797308.1| - 0.0092 16.0 0.0 0.014 15.4 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function DUF223 Penicillinase_R PF03965.11 gi|557694254|ref|YP_008797308.1| - 0.017 15.2 0.1 0.027 14.5 0.1 1.5 1 1 0 1 1 1 0 Penicillinase repressor HTH_11 PF08279.7 gi|557694254|ref|YP_008797308.1| - 0.021 14.4 0.1 0.033 13.8 0.1 1.3 1 0 0 1 1 1 0 HTH domain HTH_40 PF14493.1 gi|557694254|ref|YP_008797308.1| - 0.031 14.4 0.0 0.043 14.0 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain TFIIE_alpha PF02002.12 gi|557694254|ref|YP_008797308.1| - 0.033 13.7 0.0 0.051 13.0 0.0 1.5 1 1 0 1 1 1 0 TFIIE alpha subunit GerE PF00196.14 gi|557694254|ref|YP_008797308.1| - 0.061 12.6 0.1 0.13 11.5 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family HTH_34 PF13601.1 gi|557694254|ref|YP_008797308.1| - 0.084 12.9 0.1 0.11 12.4 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_45 PF14947.1 gi|557694254|ref|YP_008797308.1| - 0.085 12.6 0.0 0.13 12.0 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix FeoC PF09012.5 gi|557694254|ref|YP_008797308.1| - 0.11 12.2 0.0 0.15 11.8 0.0 1.2 1 0 0 1 1 1 0 FeoC like transcriptional regulator Pyr_redox_2 PF07992.9 gi|557694255|ref|YP_008797309.1| - 1.9e-14 54.0 0.0 2.5e-14 53.6 0.0 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.1 gi|557694255|ref|YP_008797309.1| - 0.0051 16.5 0.0 2.9 7.6 0.0 2.3 2 0 0 2 2 2 2 FAD-NAD(P)-binding Pyr_redox_3 PF13738.1 gi|557694255|ref|YP_008797309.1| - 0.0075 16.3 0.0 1.3 9.0 0.0 3.0 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|557694255|ref|YP_008797309.1| - 0.011 16.1 0.0 15 6.0 0.0 3.3 3 1 1 4 4 4 0 Pyridine nucleotide-disulphide oxidoreductase NAD_Gly3P_dh_N PF01210.18 gi|557694255|ref|YP_008797309.1| - 0.095 12.4 0.1 0.17 11.6 0.0 1.4 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Trp_halogenase PF04820.9 gi|557694255|ref|YP_008797309.1| - 0.14 10.7 0.0 0.78 8.2 0.0 2.0 2 0 0 2 2 2 0 Tryptophan halogenase TusA PF01206.12 gi|557694256|ref|YP_008797310.1| - 1.9e-19 69.0 0.0 2.1e-19 68.8 0.0 1.0 1 0 0 1 1 1 1 Sulfurtransferase TusA DrsE_2 PF13686.1 gi|557694257|ref|YP_008797311.1| - 1.1e-47 161.4 1.0 1.3e-47 161.3 0.7 1.0 1 0 0 1 1 1 1 DsrE/DsrF/DrsH-like family DrsE PF02635.10 gi|557694257|ref|YP_008797311.1| - 6.7e-11 42.3 0.1 6.9e-10 39.0 0.1 2.0 1 1 0 1 1 1 1 DsrE/DsrF-like family Far-17a_AIG1 PF04750.9 gi|557694257|ref|YP_008797311.1| - 0.029 13.5 0.0 0.033 13.3 0.0 1.2 1 0 0 1 1 1 0 FAR-17a/AIG1-like protein Glyco_transf_4 PF13439.1 gi|557694257|ref|YP_008797311.1| - 0.031 13.9 0.0 0.054 13.2 0.0 1.5 2 0 0 2 2 2 0 Glycosyltransferase Family 4 Topoisom_I_N PF02919.10 gi|557694258|ref|YP_008797312.1| - 1.8e-65 220.2 0.5 1.8e-65 220.2 0.3 3.0 2 1 0 2 2 2 1 Eukaryotic DNA topoisomerase I, DNA binding fragment Topoisom_I PF01028.15 gi|557694258|ref|YP_008797312.1| - 4.7e-60 202.6 6.0 8.9e-60 201.7 4.2 1.4 1 0 0 1 1 1 1 Eukaryotic DNA topoisomerase I, catalytic core Topo_C_assoc PF14370.1 gi|557694258|ref|YP_008797312.1| - 1.1e-16 60.1 0.2 1.1e-16 60.1 0.1 2.5 2 0 0 2 2 2 1 C-terminal topoisomerase domain DUF2631 PF10939.3 gi|557694258|ref|YP_008797312.1| - 0.044 13.6 0.0 0.12 12.2 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2631) DUF4140 PF13600.1 gi|557694258|ref|YP_008797312.1| - 0.063 13.7 8.6 7.7 7.0 3.4 3.2 3 0 0 3 3 3 0 N-terminal domain of unknown function (DUF4140) UPF0278 PF08745.6 gi|557694258|ref|YP_008797312.1| - 0.11 11.7 3.2 0.17 11.0 0.1 2.7 2 1 1 3 3 3 0 UPF0278 family Glycohydro_20b2 PF14845.1 gi|557694258|ref|YP_008797312.1| - 0.14 12.7 2.5 11 6.7 1.6 2.6 1 1 0 1 1 1 0 beta-acetyl hexosaminidase like Lsm_C PF14894.1 gi|557694259|ref|YP_008797313.1| - 1.6e-24 85.1 1.9 2.6e-24 84.4 0.3 1.9 2 0 0 2 2 2 1 Lsm C-terminal CitMHS PF03600.11 gi|557694260|ref|YP_008797314.1| - 1.2e-22 80.0 25.3 1.2e-22 80.0 17.5 1.9 2 0 0 2 2 2 1 Citrate transporter Na_sulph_symp PF00939.14 gi|557694260|ref|YP_008797314.1| - 3.3e-08 32.8 22.7 0.00034 19.6 6.5 3.1 1 1 1 2 2 2 2 Sodium:sulfate symporter transmembrane region Met_10 PF02475.11 gi|557694261|ref|YP_008797315.1| - 2.2e-61 206.9 0.0 3.2e-61 206.4 0.0 1.2 1 0 0 1 1 1 1 Met-10+ like-protein MTS PF05175.9 gi|557694261|ref|YP_008797315.1| - 2.6e-10 39.9 0.0 8.5e-10 38.2 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase small domain Methyltransf_26 PF13659.1 gi|557694261|ref|YP_008797315.1| - 3.8e-10 39.8 0.0 8.4e-10 38.7 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|557694261|ref|YP_008797315.1| - 7e-09 36.2 0.0 1.4e-08 35.2 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.10 gi|557694261|ref|YP_008797315.1| - 1.8e-07 30.7 0.0 2.9e-07 30.0 0.0 1.2 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_31 PF13847.1 gi|557694261|ref|YP_008797315.1| - 2e-07 30.6 0.0 7.9e-07 28.7 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_15 PF09445.5 gi|557694261|ref|YP_008797315.1| - 6.4e-07 29.0 0.0 1e-06 28.4 0.0 1.2 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_4 PF02390.12 gi|557694261|ref|YP_008797315.1| - 0.0003 19.8 0.0 0.0005 19.1 0.0 1.3 1 0 0 1 1 1 1 Putative methyltransferase TRM PF02005.11 gi|557694261|ref|YP_008797315.1| - 0.00032 19.7 0.0 0.00042 19.3 0.0 1.2 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase PrmA PF06325.8 gi|557694261|ref|YP_008797315.1| - 0.00098 18.3 0.0 0.0014 17.7 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) UPF0020 PF01170.13 gi|557694261|ref|YP_008797315.1| - 0.0034 16.9 0.0 0.0056 16.2 0.0 1.3 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Nol1_Nop2_Fmu PF01189.12 gi|557694261|ref|YP_008797315.1| - 0.012 15.0 0.0 0.018 14.4 0.0 1.2 1 0 0 1 1 1 0 NOL1/NOP2/sun family PRMT5 PF05185.11 gi|557694261|ref|YP_008797315.1| - 0.016 14.1 0.0 0.021 13.7 0.0 1.1 1 0 0 1 1 1 0 PRMT5 arginine-N-methyltransferase Methyltransf_23 PF13489.1 gi|557694261|ref|YP_008797315.1| - 0.021 14.5 0.0 0.36 10.5 0.0 2.1 2 0 0 2 2 2 0 Methyltransferase domain N6_Mtase PF02384.11 gi|557694261|ref|YP_008797315.1| - 0.06 12.4 0.0 0.086 11.9 0.0 1.1 1 0 0 1 1 1 0 N-6 DNA Methylase DNA_methylase PF00145.12 gi|557694261|ref|YP_008797315.1| - 0.071 12.2 0.0 0.11 11.6 0.0 1.2 1 0 0 1 1 1 0 C-5 cytosine-specific DNA methylase EVC2_like PF12297.3 gi|557694262|ref|YP_008797316.1| - 0.17 10.4 0.2 0.21 10.1 0.1 1.1 1 0 0 1 1 1 0 Ellis van Creveld protein 2 like protein Cupredoxin_1 PF13473.1 gi|557694263|ref|YP_008797317.1| - 0.01 15.6 0.0 0.018 14.8 0.0 1.6 1 1 0 1 1 1 0 Cupredoxin-like domain DUF1628 PF07790.6 gi|557694263|ref|YP_008797317.1| - 0.032 14.9 1.1 0.055 14.2 0.8 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF1628) SP_C-Propep PF08999.5 gi|557694263|ref|YP_008797317.1| - 0.035 13.5 0.1 0.055 12.9 0.0 1.4 1 0 0 1 1 1 0 Surfactant protein C, N terminal propeptide DUF2749 PF10907.3 gi|557694263|ref|YP_008797317.1| - 0.1 12.5 0.7 0.16 11.8 0.5 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2749) Histidinol_dh PF00815.15 gi|557694264|ref|YP_008797318.1| - 8.6e-122 406.7 5.3 1.1e-121 406.4 3.7 1.0 1 0 0 1 1 1 1 Histidinol dehydrogenase DUF1079 PF06435.6 gi|557694264|ref|YP_008797318.1| - 0.11 12.4 0.4 0.59 10.1 0.0 2.3 2 0 0 2 2 2 0 Repeat of unknown function (DUF1079) Pur_DNA_glyco PF02245.11 gi|557694265|ref|YP_008797319.1| - 6.3e-51 172.1 0.0 1.2e-50 171.2 0.0 1.4 1 1 0 1 1 1 1 Methylpurine-DNA glycosylase (MPG) UDG PF03167.14 gi|557694266|ref|YP_008797320.1| - 5.1e-42 142.9 0.0 6.2e-42 142.6 0.0 1.1 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily AhpC-TSA PF00578.16 gi|557694267|ref|YP_008797321.1| - 6.7e-36 122.7 0.0 8.1e-36 122.4 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.5 gi|557694267|ref|YP_008797321.1| - 6.5e-20 71.1 0.0 7.8e-20 70.8 0.0 1.0 1 0 0 1 1 1 1 Redoxin AhpC-TSA_2 PF13911.1 gi|557694267|ref|YP_008797321.1| - 0.0017 18.2 0.0 0.0021 17.9 0.0 1.2 1 0 0 1 1 1 1 AhpC/TSA antioxidant enzyme DUF4599 PF15371.1 gi|557694267|ref|YP_008797321.1| - 0.024 14.7 0.0 0.046 13.7 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4599) SCO1-SenC PF02630.9 gi|557694267|ref|YP_008797321.1| - 0.072 12.7 0.0 1.1 8.8 0.0 2.3 2 1 0 2 2 2 0 SCO1/SenC SCP2 PF02036.12 gi|557694268|ref|YP_008797322.1| - 1e-13 51.4 0.0 1.2e-13 51.1 0.0 1.2 1 0 0 1 1 1 1 SCP-2 sterol transfer family Alkyl_sulf_C PF14864.1 gi|557694268|ref|YP_008797322.1| - 3e-06 27.2 0.0 3.7e-06 26.9 0.0 1.1 1 0 0 1 1 1 1 Alkyl sulfatase C-terminal CDP-OH_P_transf PF01066.16 gi|557694269|ref|YP_008797323.1| - 3.6e-15 56.1 15.0 4.6e-14 52.5 10.3 2.1 1 1 0 1 1 1 1 CDP-alcohol phosphatidyltransferase UPF0066 PF01980.11 gi|557694270|ref|YP_008797324.1| - 5.8e-35 119.8 0.0 7.3e-35 119.5 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised protein family UPF0066 GCV_H PF01597.14 gi|557694272|ref|YP_008797326.1| - 5.9e-42 142.1 0.1 7e-42 141.9 0.1 1.0 1 0 0 1 1 1 1 Glycine cleavage H-protein Biotin_lipoyl PF00364.17 gi|557694272|ref|YP_008797326.1| - 0.0051 16.4 0.0 0.0098 15.5 0.0 1.4 1 0 0 1 1 1 1 Biotin-requiring enzyme RnfC_N PF13375.1 gi|557694272|ref|YP_008797326.1| - 0.0096 15.6 0.0 0.013 15.1 0.0 1.3 1 0 0 1 1 1 1 RnfC Barrel sandwich hybrid domain zinc_ribbon_2 PF13240.1 gi|557694273|ref|YP_008797327.1| - 0.0033 16.8 0.8 0.99 8.9 0.0 2.2 2 0 0 2 2 2 2 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|557694273|ref|YP_008797327.1| - 0.016 14.4 1.8 0.64 9.3 0.0 2.2 2 0 0 2 2 2 0 zinc-ribbon domain CBM_10 PF02013.11 gi|557694273|ref|YP_008797327.1| - 0.026 14.7 0.6 0.026 14.7 0.4 1.5 2 0 0 2 2 2 0 Cellulose or protein binding domain DZR PF12773.2 gi|557694273|ref|YP_008797327.1| - 0.04 13.7 0.7 0.061 13.1 0.5 1.3 1 1 0 1 1 1 0 Double zinc ribbon zf-C3HC4_2 PF13923.1 gi|557694273|ref|YP_008797327.1| - 0.044 13.8 0.8 0.057 13.4 0.6 1.2 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) Nop10p PF04135.7 gi|557694273|ref|YP_008797327.1| - 0.06 13.0 0.4 0.097 12.4 0.3 1.4 1 0 0 1 1 1 0 Nucleolar RNA-binding protein, Nop10p family Orexin PF02072.10 gi|557694273|ref|YP_008797327.1| - 0.065 13.0 0.2 0.074 12.8 0.2 1.1 1 0 0 1 1 1 0 Prepro-orexin BIR PF00653.16 gi|557694273|ref|YP_008797327.1| - 0.066 13.6 0.1 0.077 13.4 0.1 1.2 1 0 0 1 1 1 0 Inhibitor of Apoptosis domain Cript PF10235.4 gi|557694273|ref|YP_008797327.1| - 0.12 12.7 0.8 0.14 12.5 0.6 1.2 1 0 0 1 1 1 0 Microtubule-associated protein CRIPT Zn_Tnp_IS1595 PF12760.2 gi|557694273|ref|YP_008797327.1| - 0.58 10.0 4.7 0.71 9.7 0.2 2.1 1 1 1 2 2 2 0 Transposase zinc-ribbon domain Peptidase_M20 PF01546.23 gi|557694274|ref|YP_008797328.1| - 1.1e-30 106.5 0.0 1.4e-30 106.1 0.0 1.2 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.9 gi|557694274|ref|YP_008797328.1| - 1.2e-13 50.7 0.0 2.2e-13 49.8 0.0 1.5 1 0 0 1 1 1 1 Peptidase dimerisation domain Peptidase_M28 PF04389.12 gi|557694274|ref|YP_008797328.1| - 0.0021 17.8 0.0 0.004 16.9 0.0 1.5 1 0 0 1 1 1 1 Peptidase family M28 DegT_DnrJ_EryC1 PF01041.12 gi|557694276|ref|YP_008797330.1| - 2.7e-114 382.0 0.0 3.1e-114 381.8 0.0 1.0 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_1_2 PF00155.16 gi|557694276|ref|YP_008797330.1| - 5.4e-06 25.5 0.0 1.4e-05 24.2 0.0 1.9 1 1 0 1 1 1 1 Aminotransferase class I and II Cys_Met_Meta_PP PF01053.15 gi|557694276|ref|YP_008797330.1| - 0.00029 19.2 0.0 0.00046 18.5 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_5 PF00266.14 gi|557694276|ref|YP_008797330.1| - 0.00038 19.3 0.0 0.0067 15.1 0.0 2.0 2 0 0 2 2 2 1 Aminotransferase class-V Beta_elim_lyase PF01212.16 gi|557694276|ref|YP_008797330.1| - 0.00083 18.5 0.0 0.0014 17.8 0.0 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase Glyoxalase_4 PF13669.1 gi|557694276|ref|YP_008797330.1| - 0.0017 18.3 0.0 0.064 13.2 0.0 2.7 2 2 0 2 2 2 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily PEP_mutase PF13714.1 gi|557694276|ref|YP_008797330.1| - 0.053 12.7 0.0 0.18 10.9 0.0 1.8 2 0 0 2 2 2 0 Phosphoenolpyruvate phosphomutase Antitoxin-MazE PF04014.13 gi|557694277|ref|YP_008797331.1| - 0.02 14.5 0.0 0.046 13.4 0.0 1.6 1 0 0 1 1 1 0 Antidote-toxin recognition MazE Transposase_28 PF04195.7 gi|557694277|ref|YP_008797331.1| - 0.024 13.9 0.0 0.063 12.5 0.0 1.6 1 1 1 2 2 2 0 Putative gypsy type transposon Mrr_N PF14338.1 gi|557694277|ref|YP_008797331.1| - 0.12 12.4 0.0 0.22 11.6 0.0 1.4 1 0 0 1 1 1 0 Mrr N-terminal domain Glucokinase PF02685.11 gi|557694277|ref|YP_008797331.1| - 0.15 10.7 0.0 0.22 10.2 0.0 1.1 1 0 0 1 1 1 0 Glucokinase HxlR PF01638.12 gi|557694278|ref|YP_008797332.1| - 5.2e-28 96.5 0.0 8.2e-15 54.2 0.0 2.5 1 1 1 2 2 2 2 HxlR-like helix-turn-helix HTH_5 PF01022.15 gi|557694278|ref|YP_008797332.1| - 1e-07 31.5 0.2 0.00015 21.3 0.0 2.4 2 0 0 2 2 2 2 Bacterial regulatory protein, arsR family HTH_45 PF14947.1 gi|557694278|ref|YP_008797332.1| - 1.1e-07 31.6 0.0 0.0012 18.5 0.0 2.2 2 0 0 2 2 2 2 Winged helix-turn-helix HTH_20 PF12840.2 gi|557694278|ref|YP_008797332.1| - 7.4e-07 28.8 0.0 0.017 14.9 0.0 2.3 2 0 0 2 2 2 2 Helix-turn-helix domain HTH_27 PF13463.1 gi|557694278|ref|YP_008797332.1| - 5.6e-06 26.5 0.0 0.0065 16.7 0.0 2.5 2 1 0 2 2 2 2 Winged helix DNA-binding domain DUF4423 PF14394.1 gi|557694278|ref|YP_008797332.1| - 0.00084 18.9 0.0 0.063 12.8 0.0 2.1 2 0 0 2 2 2 1 Domain of unknown function (DUF4423) PadR PF03551.9 gi|557694278|ref|YP_008797332.1| - 0.00093 18.9 0.0 0.011 15.4 0.0 2.6 2 1 0 2 2 2 1 Transcriptional regulator PadR-like family MarR_2 PF12802.2 gi|557694278|ref|YP_008797332.1| - 0.0011 18.5 0.0 1.5 8.5 0.0 2.4 2 0 0 2 2 2 2 MarR family Rio2_N PF09202.6 gi|557694278|ref|YP_008797332.1| - 0.0066 16.4 0.0 3.2 7.8 0.0 2.3 2 0 0 2 2 2 2 Rio2, N-terminal Rrf2 PF02082.15 gi|557694278|ref|YP_008797332.1| - 0.0089 16.1 0.0 0.19 11.8 0.0 2.3 2 0 0 2 2 2 1 Transcriptional regulator HTH_24 PF13412.1 gi|557694278|ref|YP_008797332.1| - 0.041 13.2 0.0 4.8 6.6 0.0 2.4 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding TrmB PF01978.14 gi|557694278|ref|YP_008797332.1| - 0.094 12.4 0.0 11 5.8 0.0 2.3 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB B-block_TFIIIC PF04182.7 gi|557694278|ref|YP_008797332.1| - 0.14 12.0 0.2 7 6.5 0.1 2.2 2 0 0 2 2 2 0 B-block binding subunit of TFIIIC Protoglobin PF11563.3 gi|557694279|ref|YP_008797333.1| - 4.8e-35 120.5 0.1 6.3e-35 120.1 0.1 1.2 1 0 0 1 1 1 1 Protoglobin dsDNA_bind PF01984.15 gi|557694280|ref|YP_008797334.1| - 0.004 17.1 0.0 0.0049 16.8 0.0 1.2 1 0 0 1 1 1 1 Double-stranded DNA-binding domain PmbA_TldD PF01523.11 gi|557694281|ref|YP_008797335.1| - 6.4e-51 173.3 0.1 8.4e-51 172.9 0.1 1.1 1 0 0 1 1 1 1 Putative modulator of DNA gyrase Ribosomal_L16 PF00252.13 gi|557694282|ref|YP_008797336.1| - 8.1e-23 80.6 0.1 1e-22 80.3 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L16p/L10e RVT_3 PF13456.1 gi|557694283|ref|YP_008797337.1| - 1.5e-24 85.5 0.7 1.8e-24 85.2 0.5 1.1 1 0 0 1 1 1 1 Reverse transcriptase-like RNase_H PF00075.19 gi|557694283|ref|YP_008797337.1| - 4.6e-21 75.5 0.1 5.3e-21 75.3 0.1 1.0 1 0 0 1 1 1 1 RNase H E2_bind PF08825.5 gi|557694283|ref|YP_008797337.1| - 0.053 13.2 0.3 0.073 12.8 0.2 1.2 1 0 0 1 1 1 0 E2 binding domain Ribosomal_S18 PF01084.15 gi|557694283|ref|YP_008797337.1| - 0.097 12.5 0.2 0.18 11.6 0.1 1.5 1 0 0 1 1 1 0 Ribosomal protein S18 Anti-adapt_IraP PF10796.4 gi|557694283|ref|YP_008797337.1| - 0.16 12.4 0.7 0.48 10.8 0.1 1.9 1 1 1 2 2 2 0 Sigma-S stabilisation anti-adaptor protein 2-oxoacid_dh PF00198.18 gi|557694284|ref|YP_008797338.1| - 1.7e-58 197.6 0.0 2.2e-58 197.2 0.0 1.0 1 0 0 1 1 1 1 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AATase PF07247.7 gi|557694284|ref|YP_008797338.1| - 0.15 10.6 0.0 0.44 9.0 0.0 1.7 2 0 0 2 2 2 0 Alcohol acetyltransferase DUF1297 PF06973.7 gi|557694285|ref|YP_008797339.1| - 1.1e-74 249.8 0.0 1.4e-74 249.5 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1297) DUF1246 PF06849.7 gi|557694285|ref|YP_008797339.1| - 4e-43 146.1 0.0 5.9e-43 145.5 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1246) ATP-grasp_4 PF13535.1 gi|557694285|ref|YP_008797339.1| - 0.00011 21.9 0.0 0.0019 17.9 0.0 2.2 1 1 0 1 1 1 1 ATP-grasp domain DUF1297 PF06973.7 gi|557694286|ref|YP_008797340.1| - 3.2e-56 189.6 0.1 4.7e-56 189.0 0.1 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1297) DUF1246 PF06849.7 gi|557694286|ref|YP_008797340.1| - 7.6e-38 129.0 0.0 1.8e-37 127.8 0.0 1.6 2 0 0 2 2 2 1 Protein of unknown function (DUF1246) ATP-grasp_4 PF13535.1 gi|557694286|ref|YP_008797340.1| - 0.00014 21.6 0.0 0.00025 20.8 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_3 PF02655.9 gi|557694286|ref|YP_008797340.1| - 0.0027 17.6 0.0 0.0055 16.5 0.0 1.5 1 0 0 1 1 1 1 ATP-grasp domain CPSase_L_D2 PF02786.12 gi|557694286|ref|YP_008797340.1| - 0.019 14.2 0.0 0.033 13.4 0.0 1.3 1 0 0 1 1 1 0 Carbamoyl-phosphate synthase L chain, ATP binding domain DUF87 PF01935.12 gi|557694287|ref|YP_008797341.1| - 4e-16 59.5 0.4 9.9e-16 58.2 0.3 1.6 1 1 0 1 1 1 1 Domain of unknown function DUF87 AAA_10 PF12846.2 gi|557694287|ref|YP_008797341.1| - 6.9e-15 55.2 0.0 5.3e-13 49.0 0.0 2.2 1 1 0 1 1 1 1 AAA-like domain TrwB_AAD_bind PF10412.4 gi|557694287|ref|YP_008797341.1| - 7.7e-05 21.4 0.0 0.00016 20.3 0.0 1.4 1 0 0 1 1 1 1 Type IV secretion-system coupling protein DNA-binding domain NurA PF09376.5 gi|557694288|ref|YP_008797342.1| - 0.00023 20.7 0.2 0.00083 18.9 0.1 2.0 2 1 0 2 2 2 1 NurA domain GatB_N PF02934.10 gi|557694289|ref|YP_008797343.1| - 3.2e-76 255.9 0.1 4.5e-76 255.4 0.0 1.1 1 0 0 1 1 1 1 GatB/GatE catalytic domain GatB_Yqey PF02637.13 gi|557694289|ref|YP_008797343.1| - 9.4e-22 77.3 0.1 2.7e-21 75.8 0.0 1.9 2 0 0 2 2 2 1 GatB domain GAD PF02938.9 gi|557694289|ref|YP_008797343.1| - 1.1e-14 54.3 0.3 2.4e-13 50.0 0.1 2.6 2 0 0 2 2 2 1 GAD domain YqeY PF09424.5 gi|557694289|ref|YP_008797343.1| - 0.0094 15.8 0.1 0.033 14.0 0.0 1.9 1 0 0 1 1 1 1 Yqey-like protein DUF3562 PF12085.3 gi|557694289|ref|YP_008797343.1| - 0.013 15.3 1.1 0.18 11.6 0.0 3.5 3 1 0 3 3 3 0 Protein of unknown function (DUF3562) Antimicrobial_3 PF08025.6 gi|557694289|ref|YP_008797343.1| - 0.12 12.1 0.2 0.28 10.9 0.1 1.5 1 0 0 1 1 1 0 Spider antimicrobial peptide Asparaginase PF00710.15 gi|557694290|ref|YP_008797344.1| - 1.7e-90 303.1 0.1 2.1e-90 302.7 0.1 1.1 1 0 0 1 1 1 1 Asparaginase DMA PF03474.9 gi|557694290|ref|YP_008797344.1| - 0.037 13.8 4.0 0.038 13.8 0.3 2.6 3 0 0 3 3 3 0 DMRTA motif MarR_2 PF12802.2 gi|557694291|ref|YP_008797345.1| - 2.6e-07 30.1 0.0 3.9e-07 29.6 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.5 gi|557694291|ref|YP_008797345.1| - 2.6e-06 26.9 0.0 5.8e-06 25.8 0.0 1.6 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_24 PF13412.1 gi|557694291|ref|YP_008797345.1| - 0.00085 18.6 0.0 0.0032 16.8 0.0 1.9 1 1 0 1 1 1 1 Winged helix-turn-helix DNA-binding PuR_N PF09182.5 gi|557694291|ref|YP_008797345.1| - 0.0018 17.8 0.1 0.02 14.5 0.0 2.0 2 0 0 2 2 2 1 Bacterial purine repressor, N-terminal DUF1495 PF07381.6 gi|557694291|ref|YP_008797345.1| - 0.0042 16.7 0.0 0.0092 15.6 0.0 1.7 1 1 0 1 1 1 1 Winged helix DNA-binding domain (DUF1495) HTH_11 PF08279.7 gi|557694291|ref|YP_008797345.1| - 0.022 14.4 0.0 0.081 12.5 0.0 1.9 2 1 1 3 3 3 0 HTH domain HTH_20 PF12840.2 gi|557694291|ref|YP_008797345.1| - 0.087 12.6 0.0 0.15 11.9 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_AsnC-type PF13404.1 gi|557694291|ref|YP_008797345.1| - 0.095 12.2 0.0 0.25 10.9 0.0 1.7 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain HTH_23 PF13384.1 gi|557694291|ref|YP_008797345.1| - 0.1 12.2 0.0 0.23 11.1 0.0 1.6 1 1 0 1 1 1 0 Homeodomain-like domain AA_kinase PF00696.23 gi|557694292|ref|YP_008797346.1| - 4.3e-24 85.3 0.9 6.7e-24 84.7 0.7 1.3 1 0 0 1 1 1 1 Amino acid kinase family UPF0175 PF03683.8 gi|557694293|ref|YP_008797347.1| - 2.7e-12 45.9 0.0 4.3e-12 45.3 0.0 1.4 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0175) RHH_1 PF01402.16 gi|557694293|ref|YP_008797347.1| - 3.4e-05 23.5 0.5 9.8e-05 22.0 0.2 2.0 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family HTH_23 PF13384.1 gi|557694293|ref|YP_008797347.1| - 0.013 15.1 0.2 0.034 13.7 0.1 1.8 2 0 0 2 2 2 0 Homeodomain-like domain HTH_28 PF13518.1 gi|557694293|ref|YP_008797347.1| - 0.027 14.4 0.1 0.18 11.8 0.1 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_17 PF12728.2 gi|557694293|ref|YP_008797347.1| - 0.06 13.6 1.2 1.5 9.1 0.2 2.9 2 1 0 2 2 2 0 Helix-turn-helix domain DUF3141 PF11339.3 gi|557694293|ref|YP_008797347.1| - 0.2 9.9 0.8 0.26 9.5 0.6 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3141) UPF0278 PF08745.6 gi|557694294|ref|YP_008797348.1| - 0.0081 15.4 0.2 0.03 13.5 0.1 1.9 2 0 0 2 2 2 1 UPF0278 family DUF2674 PF10879.3 gi|557694294|ref|YP_008797348.1| - 0.019 14.6 0.1 0.049 13.3 0.1 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF2674) RRP7 PF12923.2 gi|557694294|ref|YP_008797348.1| - 0.019 14.9 1.1 0.022 14.7 0.1 1.6 2 0 0 2 2 2 0 Ribosomal RNA-processing protein 7 (RRP7) DUF2309 PF10070.4 gi|557694294|ref|YP_008797348.1| - 0.085 10.9 1.3 1.1 7.2 0.9 2.0 1 1 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2309) Osmo_CC PF08946.5 gi|557694294|ref|YP_008797348.1| - 1.2 9.1 5.8 0.55 10.3 1.6 2.2 2 0 0 2 2 2 0 Osmosensory transporter coiled coil E1-E2_ATPase PF00122.15 gi|557694295|ref|YP_008797349.1| - 5.3e-71 238.2 7.6 5.3e-71 238.2 5.3 2.6 1 1 1 2 2 2 2 E1-E2 ATPase Hydrolase PF00702.21 gi|557694295|ref|YP_008797349.1| - 2.7e-39 135.7 1.9 6.3e-39 134.6 0.5 2.2 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase Cation_ATPase_C PF00689.16 gi|557694295|ref|YP_008797349.1| - 1.8e-31 109.0 4.0 1.8e-31 109.0 2.8 2.7 3 1 0 3 3 3 1 Cation transporting ATPase, C-terminus Cation_ATPase_N PF00690.21 gi|557694295|ref|YP_008797349.1| - 2e-25 88.0 0.0 4.4e-25 86.9 0.0 1.6 1 0 0 1 1 1 1 Cation transporter/ATPase, N-terminus Hydrolase_like2 PF13246.1 gi|557694295|ref|YP_008797349.1| - 8.7e-22 76.8 0.0 1.7e-21 75.9 0.0 1.5 1 0 0 1 1 1 1 Putative hydrolase of sodium-potassium ATPase alpha subunit HAD PF12710.2 gi|557694295|ref|YP_008797349.1| - 6.3e-21 75.4 0.1 1.2e-19 71.2 0.0 2.9 3 1 1 4 4 4 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|557694295|ref|YP_008797349.1| - 4.8e-05 23.0 0.3 0.011 15.3 0.3 2.5 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase DUF3650 PF12368.3 gi|557694295|ref|YP_008797349.1| - 0.026 14.0 0.2 8.5 5.9 0.0 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF3650) DUF2275 PF10039.4 gi|557694295|ref|YP_008797349.1| - 2.8 7.8 5.3 14 5.5 0.4 2.9 1 1 1 2 2 2 0 Predicted integral membrane protein (DUF2275) HEAT_2 PF13646.1 gi|557694296|ref|YP_008797350.1| - 0.019 15.2 0.1 0.022 15.0 0.1 1.1 1 0 0 1 1 1 0 HEAT repeats AF0941-like PF14591.1 gi|557694296|ref|YP_008797350.1| - 0.056 13.5 0.1 0.079 13.0 0.1 1.3 1 0 0 1 1 1 0 AF0941-like THP2 PF09432.5 gi|557694296|ref|YP_008797350.1| - 0.098 12.5 0.2 0.11 12.3 0.1 1.1 1 0 0 1 1 1 0 Tho complex subunit THP2 PIN PF01850.16 gi|557694297|ref|YP_008797351.1| - 1.1e-09 38.6 0.8 1.2e-09 38.4 0.5 1.0 1 0 0 1 1 1 1 PIN domain RasGAP_C PF03836.10 gi|557694297|ref|YP_008797351.1| - 0.0021 17.7 0.0 0.0026 17.4 0.0 1.1 1 0 0 1 1 1 1 RasGAP C-terminus AF0941-like PF14591.1 gi|557694297|ref|YP_008797351.1| - 0.0073 16.3 0.1 0.012 15.6 0.1 1.4 1 0 0 1 1 1 1 AF0941-like GvpK PF05121.7 gi|557694297|ref|YP_008797351.1| - 0.1 12.4 0.3 0.17 11.7 0.2 1.3 1 0 0 1 1 1 0 Gas vesicle protein K eRF1_2 PF03464.10 gi|557694298|ref|YP_008797352.1| - 4.9e-37 127.2 0.1 1.4e-36 125.7 0.0 1.8 1 0 0 1 1 1 1 eRF1 domain 2 eRF1_3 PF03465.10 gi|557694298|ref|YP_008797352.1| - 5.2e-27 94.3 0.6 3.4e-26 91.7 0.2 2.3 2 0 0 2 2 2 1 eRF1 domain 3 eRF1_1 PF03463.10 gi|557694298|ref|YP_008797352.1| - 4.4e-23 81.2 0.0 7.9e-23 80.4 0.0 1.4 1 0 0 1 1 1 1 eRF1 domain 1 Ribosomal_L7Ae PF01248.21 gi|557694298|ref|YP_008797352.1| - 0.014 14.9 0.1 0.036 13.5 0.1 1.8 1 0 0 1 1 1 0 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family Resolvase PF00239.16 gi|557694298|ref|YP_008797352.1| - 0.017 14.9 2.3 3.2 7.6 0.0 3.5 3 1 0 3 3 3 0 Resolvase, N terminal domain HypA PF01155.14 gi|557694298|ref|YP_008797352.1| - 0.052 13.2 0.1 0.12 12.0 0.1 1.5 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family DUF3107 PF11305.3 gi|557694298|ref|YP_008797352.1| - 0.089 12.6 0.1 4.1 7.3 0.0 3.0 4 0 0 4 4 4 0 Protein of unknown function (DUF3107) zf-ribbon_3 PF13248.1 gi|557694298|ref|YP_008797352.1| - 0.11 11.7 0.5 0.2 10.8 0.4 1.5 1 0 0 1 1 1 0 zinc-ribbon domain zf-trcl PF13451.1 gi|557694298|ref|YP_008797352.1| - 0.12 11.9 1.7 0.36 10.4 1.2 1.7 1 1 0 1 1 1 0 Probable zinc-binding domain Ribosomal_S27e PF01667.12 gi|557694298|ref|YP_008797352.1| - 0.27 10.8 1.4 6.1 6.4 0.1 2.3 2 0 0 2 2 2 0 Ribosomal protein S27 zinc_ribbon_5 PF13719.1 gi|557694298|ref|YP_008797352.1| - 1.9 8.1 4.3 9.7 5.8 0.2 2.2 1 1 1 2 2 2 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|557694298|ref|YP_008797352.1| - 2 8.1 4.5 14 5.5 0.3 2.2 1 1 1 2 2 2 0 zinc-ribbon domain DeoC PF01791.4 gi|557694300|ref|YP_008797354.1| - 3.8e-35 121.2 0.0 4.3e-35 121.1 0.0 1.0 1 0 0 1 1 1 1 DeoC/LacD family aldolase DUF556 PF04476.8 gi|557694300|ref|YP_008797354.1| - 0.008 15.4 0.7 0.25 10.5 0.1 2.2 1 1 1 2 2 2 2 Protein of unknown function (DUF556) PcrB PF01884.12 gi|557694300|ref|YP_008797354.1| - 0.12 11.6 0.7 6.3 5.9 0.0 2.6 2 1 0 2 2 2 0 PcrB family Radical_SAM PF04055.16 gi|557694301|ref|YP_008797355.1| - 1.1e-14 54.9 0.0 3.4e-14 53.3 0.0 1.8 1 1 1 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|557694301|ref|YP_008797355.1| - 2.9e-06 27.4 0.1 5.4e-06 26.5 0.1 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|557694301|ref|YP_008797355.1| - 0.003 17.5 0.1 0.0064 16.5 0.1 1.6 1 0 0 1 1 1 1 4Fe-4S single cluster domain HAD_2 PF13419.1 gi|557694302|ref|YP_008797356.1| - 1.1e-27 97.3 0.0 1.3e-27 97.1 0.0 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|557694302|ref|YP_008797356.1| - 9.3e-14 50.9 0.0 1.5e-13 50.2 0.0 1.3 1 0 0 1 1 1 1 HAD-hyrolase-like Hydrolase PF00702.21 gi|557694302|ref|YP_008797356.1| - 2.2e-13 51.1 0.0 6.8e-13 49.5 0.0 1.7 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|557694302|ref|YP_008797356.1| - 0.0064 16.6 0.0 0.015 15.5 0.0 1.7 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase PGP_phosphatase PF09419.5 gi|557694302|ref|YP_008797356.1| - 0.009 15.3 0.2 0.36 10.1 0.0 2.6 2 1 1 3 3 3 1 Mitochondrial PGP phosphatase tRNA-synt_1g PF09334.6 gi|557694303|ref|YP_008797357.1| - 1.9e-129 431.7 0.0 2.3e-129 431.4 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (M) Anticodon_1 PF08264.8 gi|557694303|ref|YP_008797357.1| - 1.4e-08 34.6 0.0 2.4e-08 33.9 0.0 1.4 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1 PF00133.17 gi|557694303|ref|YP_008797357.1| - 3.8e-06 25.2 0.3 0.00045 18.3 0.0 3.2 2 2 2 4 4 4 1 tRNA synthetases class I (I, L, M and V) DZR PF12773.2 gi|557694303|ref|YP_008797357.1| - 0.0003 20.5 7.7 0.036 13.8 2.7 2.5 1 1 1 2 2 2 2 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|557694303|ref|YP_008797357.1| - 0.0022 17.1 10.8 0.37 10.0 3.3 3.3 2 2 0 2 2 2 2 zinc-ribbon domain PDDEXK_1 PF12705.2 gi|557694303|ref|YP_008797357.1| - 0.012 15.0 0.0 0.021 14.2 0.0 1.3 1 0 0 1 1 1 0 PD-(D/E)XK nuclease superfamily zf-C2HC5 PF06221.8 gi|557694303|ref|YP_008797357.1| - 0.1 12.3 5.3 1.6 8.5 0.2 2.3 1 1 1 2 2 2 0 Putative zinc finger motif, C2HC5-type tRNA-synt_1f PF01921.13 gi|557694303|ref|YP_008797357.1| - 0.1 11.2 0.0 0.17 10.4 0.0 1.3 1 0 0 1 1 1 0 tRNA synthetases class I (K) zinc_ribbon_2 PF13240.1 gi|557694303|ref|YP_008797357.1| - 1.6 8.3 13.7 0.1 12.0 2.7 3.3 2 1 1 3 3 3 0 zinc-ribbon domain HypA PF01155.14 gi|557694303|ref|YP_008797357.1| - 2.5 7.8 4.1 5 6.8 0.2 2.2 1 1 1 2 2 2 0 Hydrogenase expression/synthesis hypA family Med27 PF11571.3 gi|557694303|ref|YP_008797357.1| - 7.7 6.7 6.3 73 3.5 2.6 2.5 1 1 1 2 2 2 0 Mediator complex subunit 27 LSM PF01423.17 gi|557694305|ref|YP_008797359.1| - 0.025 14.0 0.1 0.049 13.1 0.0 1.5 1 0 0 1 1 1 0 LSM domain PNP_UDP_1 PF01048.15 gi|557694306|ref|YP_008797360.1| - 5.2e-36 123.7 0.1 5.7e-36 123.6 0.0 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily Oxidored_q6 PF01058.17 gi|557694307|ref|YP_008797361.1| - 0.081 12.5 0.1 0.14 11.7 0.1 1.3 1 0 0 1 1 1 0 NADH ubiquinone oxidoreductase, 20 Kd subunit BPD_transp_2 PF02653.11 gi|557694308|ref|YP_008797362.1| - 5.8e-35 120.5 35.1 5.8e-35 120.5 24.3 1.5 2 0 0 2 2 2 1 Branched-chain amino acid transport system / permease component Bacteriocin_IIc PF10439.4 gi|557694308|ref|YP_008797362.1| - 1.9 8.6 15.8 0.077 13.1 2.5 2.6 2 0 0 2 2 2 0 Bacteriocin class II with double-glycine leader peptide BPD_transp_2 PF02653.11 gi|557694309|ref|YP_008797363.1| - 2.5e-43 147.9 39.3 2.8e-43 147.8 24.0 2.0 2 0 0 2 2 2 2 Branched-chain amino acid transport system / permease component HAMP PF00672.20 gi|557694309|ref|YP_008797363.1| - 3.7 7.7 0.0 3.7 7.7 0.0 3.6 4 0 0 4 4 4 0 HAMP domain Bmp PF02608.9 gi|557694310|ref|YP_008797364.1| - 2e-41 141.7 0.4 1e-24 86.8 0.0 2.1 2 0 0 2 2 2 2 Basic membrane protein Methyltransf_4 PF02390.12 gi|557694310|ref|YP_008797364.1| - 0.053 12.5 0.0 0.099 11.6 0.0 1.4 1 0 0 1 1 1 0 Putative methyltransferase BtpA PF03437.10 gi|557694311|ref|YP_008797365.1| - 8.7e-70 234.8 0.0 1e-69 234.6 0.0 1.0 1 0 0 1 1 1 1 BtpA family Trp_syntA PF00290.15 gi|557694311|ref|YP_008797365.1| - 6.2e-05 21.6 0.0 0.00022 19.8 0.0 1.9 2 1 1 3 3 3 1 Tryptophan synthase alpha chain PcrB PF01884.12 gi|557694311|ref|YP_008797365.1| - 0.028 13.6 0.0 0.05 12.8 0.0 1.4 1 0 0 1 1 1 0 PcrB family B12-binding PF02310.14 gi|557694311|ref|YP_008797365.1| - 0.045 13.6 0.1 0.076 12.8 0.1 1.4 1 0 0 1 1 1 0 B12 binding domain TIM PF00121.13 gi|557694311|ref|YP_008797365.1| - 0.15 11.0 0.0 0.27 10.2 0.0 1.4 1 0 0 1 1 1 0 Triosephosphate isomerase PfkB PF00294.19 gi|557694312|ref|YP_008797366.1| - 6.3e-56 189.7 0.1 7e-56 189.5 0.1 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase dCMP_cyt_deam_1 PF00383.17 gi|557694313|ref|YP_008797367.1| - 9.1e-19 67.0 0.1 1e-18 66.8 0.0 1.0 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region dCMP_cyt_deam_2 PF08211.6 gi|557694313|ref|YP_008797367.1| - 5.8e-12 45.7 0.4 3.4e-11 43.2 0.1 1.9 2 0 0 2 2 2 1 Cytidine and deoxycytidylate deaminase zinc-binding region LmjF365940-deam PF14421.1 gi|557694313|ref|YP_008797367.1| - 2.2e-05 23.9 1.8 0.0077 15.6 0.1 2.1 1 1 1 2 2 2 2 A distinct subfamily of CDD/CDA-like deaminases IU_nuc_hydro PF01156.14 gi|557694314|ref|YP_008797368.1| - 3.7e-83 279.3 0.0 4e-83 279.1 0.0 1.0 1 0 0 1 1 1 1 Inosine-uridine preferring nucleoside hydrolase DeoC PF01791.4 gi|557694315|ref|YP_008797369.1| - 1.3e-43 148.9 4.4 1.5e-43 148.8 3.1 1.0 1 0 0 1 1 1 1 DeoC/LacD family aldolase DHO_dh PF01180.16 gi|557694315|ref|YP_008797369.1| - 0.067 12.1 1.4 0.46 9.3 0.3 2.2 2 1 0 2 2 2 0 Dihydroorotate dehydrogenase FMN_dh PF01070.13 gi|557694315|ref|YP_008797369.1| - 0.075 11.8 2.8 0.13 11.0 2.0 1.8 1 1 0 1 1 1 0 FMN-dependent dehydrogenase Amidohydro_1 PF01979.15 gi|557694315|ref|YP_008797369.1| - 0.099 12.2 0.0 0.13 11.8 0.0 1.2 1 0 0 1 1 1 0 Amidohydrolase family PfkB PF00294.19 gi|557694316|ref|YP_008797370.1| - 1.7e-53 181.7 3.0 2.1e-53 181.4 2.1 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Phos_pyr_kin PF08543.7 gi|557694316|ref|YP_008797370.1| - 1.1e-13 50.9 0.1 1.7e-13 50.3 0.0 1.2 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase Carb_kinase PF01256.12 gi|557694316|ref|YP_008797370.1| - 1.8e-09 37.2 0.1 3.3e-09 36.3 0.0 1.4 1 0 0 1 1 1 1 Carbohydrate kinase PNP_UDP_1 PF01048.15 gi|557694317|ref|YP_008797371.1| - 2.8e-38 131.1 0.2 3.5e-38 130.9 0.1 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily PDZ PF00595.19 gi|557694317|ref|YP_008797371.1| - 0.14 12.3 0.0 0.26 11.4 0.0 1.4 1 0 0 1 1 1 0 PDZ domain (Also known as DHR or GLGF) BtpA PF03437.10 gi|557694318|ref|YP_008797372.1| - 2.1e-75 253.2 0.0 2.4e-75 253.0 0.0 1.0 1 0 0 1 1 1 1 BtpA family Trp_syntA PF00290.15 gi|557694318|ref|YP_008797372.1| - 0.0068 14.9 0.1 0.024 13.1 0.0 1.9 2 0 0 2 2 2 1 Tryptophan synthase alpha chain NMO PF03060.10 gi|557694318|ref|YP_008797372.1| - 0.03 13.4 0.2 0.058 12.5 0.1 1.6 1 1 1 2 2 2 0 Nitronate monooxygenase ABC_tran PF00005.22 gi|557694319|ref|YP_008797373.1| - 5.4e-49 166.0 0.0 1.6e-29 102.9 0.0 2.4 2 0 0 2 2 2 2 ABC transporter AAA_21 PF13304.1 gi|557694319|ref|YP_008797373.1| - 3.6e-05 23.8 0.7 0.043 13.7 0.0 2.3 2 0 0 2 2 2 2 AAA domain DUF258 PF03193.11 gi|557694319|ref|YP_008797373.1| - 0.014 14.5 0.5 0.2 10.8 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function, DUF258 IstB_IS21 PF01695.12 gi|557694319|ref|YP_008797373.1| - 0.05 13.0 0.2 11 5.4 0.0 2.5 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_23 PF13476.1 gi|557694319|ref|YP_008797373.1| - 0.11 12.7 0.1 0.22 11.7 0.0 1.5 1 1 0 1 1 1 0 AAA domain AAA_29 PF13555.1 gi|557694319|ref|YP_008797373.1| - 0.13 11.7 0.0 0.4 10.2 0.0 1.8 2 0 0 2 2 2 0 P-loop containing region of AAA domain SMC_N PF02463.14 gi|557694319|ref|YP_008797373.1| - 0.18 11.0 0.4 3.8 6.6 0.2 2.3 1 1 0 1 1 1 0 RecF/RecN/SMC N terminal domain MmgE_PrpD PF03972.9 gi|557694320|ref|YP_008797374.1| - 4.1e-125 417.4 0.0 4.6e-125 417.2 0.0 1.0 1 0 0 1 1 1 1 MmgE/PrpD family Citrate_synt PF00285.16 gi|557694321|ref|YP_008797375.1| - 9.7e-116 386.3 0.0 1.1e-115 386.2 0.0 1.0 1 0 0 1 1 1 1 Citrate synthase tRNA-synt_1b PF00579.20 gi|557694322|ref|YP_008797376.1| - 3.3e-22 78.9 0.0 5.6e-22 78.2 0.0 1.4 1 1 0 1 1 1 1 tRNA synthetases class I (W and Y) HEAT_2 PF13646.1 gi|557694322|ref|YP_008797376.1| - 0.026 14.7 0.0 0.075 13.3 0.0 1.7 2 0 0 2 2 2 0 HEAT repeats ABC_tran PF00005.22 gi|557694323|ref|YP_008797377.1| - 8.2e-22 77.9 0.0 1.3e-21 77.3 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|557694323|ref|YP_008797377.1| - 4.7e-13 49.7 3.6 2.3e-06 27.7 0.2 2.1 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|557694323|ref|YP_008797377.1| - 4.5e-07 29.3 0.1 0.016 14.4 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.1 gi|557694323|ref|YP_008797377.1| - 0.00026 21.3 0.5 0.00048 20.5 0.3 1.4 1 0 0 1 1 1 1 AAA domain AAA_13 PF13166.1 gi|557694323|ref|YP_008797377.1| - 0.00042 18.9 0.4 0.0059 15.1 0.2 2.0 2 0 0 2 2 2 1 AAA domain AAA_19 PF13245.1 gi|557694323|ref|YP_008797377.1| - 0.00087 18.9 0.0 0.0017 18.0 0.0 1.5 1 0 0 1 1 1 1 Part of AAA domain AAA_15 PF13175.1 gi|557694323|ref|YP_008797377.1| - 0.0011 18.0 0.3 0.0076 15.3 0.0 1.9 2 0 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.1 gi|557694323|ref|YP_008797377.1| - 0.0014 18.7 0.6 0.0078 16.3 0.4 2.0 1 1 0 1 1 1 1 AAA domain AAA_14 PF13173.1 gi|557694323|ref|YP_008797377.1| - 0.0053 16.6 0.2 0.03 14.2 0.2 2.0 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.1 gi|557694323|ref|YP_008797377.1| - 0.0056 16.2 0.0 0.011 15.2 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|557694323|ref|YP_008797377.1| - 0.0063 16.0 0.0 0.01 15.3 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA PF00004.24 gi|557694323|ref|YP_008797377.1| - 0.0068 16.6 0.0 0.011 15.9 0.0 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_25 PF13481.1 gi|557694323|ref|YP_008797377.1| - 0.0071 15.7 0.0 0.011 15.1 0.0 1.3 1 0 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|557694323|ref|YP_008797377.1| - 0.011 14.9 0.1 0.016 14.3 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_16 PF13191.1 gi|557694323|ref|YP_008797377.1| - 0.015 15.2 0.0 0.018 15.0 0.0 1.3 1 0 0 1 1 1 0 AAA ATPase domain Arch_ATPase PF01637.13 gi|557694323|ref|YP_008797377.1| - 0.018 14.7 0.1 0.034 13.8 0.1 1.4 1 0 0 1 1 1 0 Archaeal ATPase AAA_24 PF13479.1 gi|557694323|ref|YP_008797377.1| - 0.028 14.0 0.1 0.049 13.2 0.1 1.3 1 0 0 1 1 1 0 AAA domain T2SE PF00437.15 gi|557694323|ref|YP_008797377.1| - 0.033 13.0 0.1 0.052 12.4 0.1 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_5 PF07728.9 gi|557694323|ref|YP_008797377.1| - 0.039 13.6 0.1 0.086 12.5 0.1 1.6 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) NACHT PF05729.7 gi|557694323|ref|YP_008797377.1| - 0.044 13.4 1.7 0.045 13.4 0.3 1.6 2 0 0 2 2 2 0 NACHT domain AAA_10 PF12846.2 gi|557694323|ref|YP_008797377.1| - 0.067 12.6 0.1 1.3 8.4 0.1 2.1 2 0 0 2 2 2 0 AAA-like domain SbcCD_C PF13558.1 gi|557694323|ref|YP_008797377.1| - 0.072 13.0 0.1 1.1 9.2 0.0 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit NTPase_1 PF03266.10 gi|557694323|ref|YP_008797377.1| - 0.092 12.4 0.1 0.19 11.4 0.1 1.5 1 0 0 1 1 1 0 NTPase DUF815 PF05673.8 gi|557694323|ref|YP_008797377.1| - 0.12 11.2 0.0 0.17 10.7 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF815) SRP54 PF00448.17 gi|557694323|ref|YP_008797377.1| - 0.15 11.5 0.2 0.26 10.7 0.2 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain Miro PF08477.8 gi|557694323|ref|YP_008797377.1| - 0.16 12.5 0.0 0.25 11.8 0.0 1.3 1 0 0 1 1 1 0 Miro-like protein MobB PF03205.9 gi|557694323|ref|YP_008797377.1| - 0.16 11.6 0.8 0.26 10.9 0.6 1.3 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B ABC_ATPase PF09818.4 gi|557694323|ref|YP_008797377.1| - 0.26 9.8 2.1 0.25 9.9 0.2 1.7 2 0 0 2 2 2 0 Predicted ATPase of the ABC class cobW PF02492.14 gi|557694323|ref|YP_008797377.1| - 0.35 10.2 1.1 0.64 9.4 0.4 1.6 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain DUF4514 PF14986.1 gi|557694324|ref|YP_008797378.1| - 0.12 12.2 0.2 0.12 12.2 0.2 3.0 3 0 0 3 3 3 0 Domain of unknown function (DUF4514) BPD_transp_1 PF00528.17 gi|557694324|ref|YP_008797378.1| - 0.13 11.8 31.9 0.0098 15.4 17.7 2.0 2 0 0 2 2 2 0 Binding-protein-dependent transport system inner membrane component SBP_bac_11 PF13531.1 gi|557694325|ref|YP_008797379.1| - 6.8e-06 25.8 0.0 5.4e-05 22.9 0.0 2.0 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein TOBE PF03459.12 gi|557694326|ref|YP_008797380.1| - 1.7e-14 53.6 0.2 3.9e-14 52.5 0.0 1.7 2 0 0 2 2 2 1 TOBE domain HTH_29 PF13551.1 gi|557694326|ref|YP_008797380.1| - 0.00034 20.7 0.0 0.00046 20.3 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn helix DUF2764 PF10962.3 gi|557694326|ref|YP_008797380.1| - 0.0023 17.2 0.0 0.0034 16.6 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF2764) HTH_28 PF13518.1 gi|557694326|ref|YP_008797380.1| - 0.0037 17.2 0.1 0.0062 16.5 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain TOBE_2 PF08402.5 gi|557694326|ref|YP_008797380.1| - 0.015 15.2 0.0 0.029 14.3 0.0 1.4 1 0 0 1 1 1 0 TOBE domain HTH_23 PF13384.1 gi|557694326|ref|YP_008797380.1| - 0.018 14.6 0.0 0.036 13.7 0.0 1.5 1 0 0 1 1 1 0 Homeodomain-like domain HTH_1 PF00126.22 gi|557694326|ref|YP_008797380.1| - 0.023 14.4 0.0 0.047 13.4 0.0 1.6 1 1 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_45 PF14947.1 gi|557694326|ref|YP_008797380.1| - 0.13 12.1 0.0 0.26 11.1 0.0 1.6 1 1 0 1 1 1 0 Winged helix-turn-helix Semialdhyde_dhC PF02774.13 gi|557694327|ref|YP_008797381.1| - 1e-34 119.9 0.0 1.7e-34 119.2 0.0 1.4 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, dimerisation domain Semialdhyde_dh PF01118.19 gi|557694327|ref|YP_008797381.1| - 1.2e-31 109.4 0.0 2.5e-31 108.5 0.0 1.5 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain GFO_IDH_MocA PF01408.17 gi|557694327|ref|YP_008797381.1| - 0.00055 20.4 0.0 0.0021 18.5 0.0 1.9 2 0 0 2 2 2 1 Oxidoreductase family, NAD-binding Rossmann fold Gp_dh_C PF02800.15 gi|557694327|ref|YP_008797381.1| - 0.0015 17.9 0.2 0.032 13.7 0.0 2.4 2 0 0 2 2 2 1 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain DXP_reductoisom PF02670.11 gi|557694327|ref|YP_008797381.1| - 0.019 15.5 0.0 0.034 14.6 0.0 1.4 1 0 0 1 1 1 0 1-deoxy-D-xylulose 5-phosphate reductoisomerase DapB_N PF01113.15 gi|557694327|ref|YP_008797381.1| - 0.08 12.8 0.0 0.19 11.6 0.0 1.7 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus DeoC PF01791.4 gi|557694328|ref|YP_008797382.1| - 6.1e-41 140.2 0.0 7e-41 140.0 0.0 1.0 1 0 0 1 1 1 1 DeoC/LacD family aldolase TMP-TENI PF02581.12 gi|557694328|ref|YP_008797382.1| - 0.0016 17.5 0.1 1.1 8.3 0.0 2.3 2 0 0 2 2 2 2 Thiamine monophosphate synthase/TENI DHQS PF01959.11 gi|557694329|ref|YP_008797383.1| - 6.1e-107 357.3 2.2 7e-107 357.1 1.5 1.0 1 0 0 1 1 1 1 3-dehydroquinate synthase (EC 4.6.1.3) Response_reg PF00072.19 gi|557694329|ref|YP_008797383.1| - 0.018 15.0 0.1 4.4 7.3 0.0 3.1 2 1 1 3 3 3 0 Response regulator receiver domain Hint PF01079.15 gi|557694329|ref|YP_008797383.1| - 0.02 14.1 0.0 0.038 13.2 0.0 1.4 1 0 0 1 1 1 0 Hint module PGDYG PF14083.1 gi|557694329|ref|YP_008797383.1| - 0.032 14.5 0.0 0.097 13.0 0.0 1.8 2 0 0 2 2 2 0 PGDYG protein PEGA PF08308.6 gi|557694329|ref|YP_008797383.1| - 0.037 13.8 0.0 0.11 12.3 0.0 1.8 2 0 0 2 2 2 0 PEGA domain Pyr_redox_2 PF07992.9 gi|557694329|ref|YP_008797383.1| - 0.12 12.1 0.1 0.27 11.0 0.0 1.4 1 1 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase DHquinase_I PF01487.10 gi|557694330|ref|YP_008797384.1| - 6.6e-45 153.4 0.0 7.4e-45 153.3 0.0 1.0 1 0 0 1 1 1 1 Type I 3-dehydroquinase Shikimate_dh_N PF08501.6 gi|557694331|ref|YP_008797385.1| - 1.3e-17 63.5 0.0 6.1e-17 61.4 0.0 2.0 2 0 0 2 2 2 1 Shikimate dehydrogenase substrate binding domain Shikimate_DH PF01488.15 gi|557694331|ref|YP_008797385.1| - 2e-06 27.9 0.0 5.4e-06 26.5 0.0 1.6 2 0 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase GHMP_kinases_N PF00288.21 gi|557694332|ref|YP_008797386.1| - 3.5e-11 42.9 3.3 3.5e-11 42.9 2.3 2.9 3 1 0 3 3 3 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.8 gi|557694332|ref|YP_008797386.1| - 0.0012 18.9 1.8 0.0014 18.7 0.3 1.8 2 0 0 2 2 2 1 GHMP kinases C terminal DUF1269 PF06897.7 gi|557694332|ref|YP_008797386.1| - 0.13 12.2 2.0 0.61 10.1 0.1 2.7 2 2 0 2 2 2 0 Protein of unknown function (DUF1269) EPSP_synthase PF00275.15 gi|557694333|ref|YP_008797387.1| - 9.6e-105 350.3 0.1 1.2e-104 350.0 0.1 1.0 1 0 0 1 1 1 1 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) TraG_N PF07916.6 gi|557694334|ref|YP_008797388.1| - 0.046 12.1 2.3 0.05 12.0 1.6 1.0 1 0 0 1 1 1 0 TraG-like protein, N-terminal region COX2_TM PF02790.10 gi|557694334|ref|YP_008797388.1| - 0.35 10.8 3.9 0.14 12.1 0.8 1.7 1 1 1 2 2 2 0 Cytochrome C oxidase subunit II, transmembrane domain DUF4064 PF13273.1 gi|557694334|ref|YP_008797388.1| - 0.57 10.3 6.7 2.4 8.2 4.6 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF4064) DUF2207 PF09972.4 gi|557694334|ref|YP_008797388.1| - 0.76 8.2 4.9 0.78 8.2 3.4 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) DUF2628 PF10947.3 gi|557694334|ref|YP_008797388.1| - 1.7 8.4 6.3 2 8.2 4.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2628) FA_desaturase PF00487.19 gi|557694334|ref|YP_008797388.1| - 5.4 6.3 6.2 6.1 6.2 4.3 1.0 1 0 0 1 1 1 0 Fatty acid desaturase DUF3119 PF11317.3 gi|557694335|ref|YP_008797389.1| - 0.00087 19.3 2.8 0.24 11.4 0.3 2.1 2 0 0 2 2 2 2 Protein of unknown function (DUF3119) Glucos_trans_II PF14264.1 gi|557694335|ref|YP_008797389.1| - 0.016 14.1 3.3 0.025 13.5 2.3 1.2 1 0 0 1 1 1 0 Glucosyl transferase GtrII Polysacc_synt_3 PF13440.1 gi|557694335|ref|YP_008797389.1| - 0.041 13.3 2.3 0.054 12.9 1.6 1.1 1 0 0 1 1 1 0 Polysaccharide biosynthesis protein DUF687 PF05095.7 gi|557694335|ref|YP_008797389.1| - 0.061 11.6 0.3 0.075 11.3 0.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF687) ECF-ribofla_trS PF07155.7 gi|557694336|ref|YP_008797390.1| - 0.00042 20.0 10.8 0.00042 20.0 7.5 2.2 1 1 1 2 2 2 1 ECF-type riboflavin transporter, S component GHMP_kinases_N PF00288.21 gi|557694337|ref|YP_008797391.1| - 1.3e-06 28.3 0.1 2.7e-06 27.3 0.1 1.5 1 0 0 1 1 1 1 GHMP kinases N terminal domain MAF_flag10 PF01973.13 gi|557694338|ref|YP_008797392.1| - 3.9e-28 98.0 0.0 5.7e-28 97.5 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function DUF115 TPK_catalytic PF04263.11 gi|557694338|ref|YP_008797392.1| - 0.001 18.6 0.1 0.42 10.2 0.1 2.3 2 0 0 2 2 2 2 Thiamin pyrophosphokinase, catalytic domain HipA_C PF07804.7 gi|557694338|ref|YP_008797392.1| - 0.036 14.1 0.0 0.086 12.9 0.0 1.5 1 0 0 1 1 1 0 HipA-like C-terminal domain GCHY-1 PF02649.9 gi|557694339|ref|YP_008797393.1| - 7.5e-52 176.2 0.1 8.6e-52 176.0 0.1 1.0 1 0 0 1 1 1 1 Type I GTP cyclohydrolase folE2 DNA_ligase_A_M PF01068.16 gi|557694340|ref|YP_008797394.1| - 1.7e-57 194.0 0.2 2.5e-57 193.5 0.1 1.3 1 0 0 1 1 1 1 ATP dependent DNA ligase domain DNA_ligase_A_N PF04675.9 gi|557694340|ref|YP_008797394.1| - 2.3e-51 174.1 0.1 4.7e-51 173.1 0.0 1.5 1 1 0 1 1 1 1 DNA ligase N terminus DNA_ligase_A_C PF04679.10 gi|557694340|ref|YP_008797394.1| - 1.8e-23 82.7 0.1 5.1e-23 81.3 0.0 1.9 2 0 0 2 2 2 1 ATP dependent DNA ligase C terminal region Lipid_DES PF08557.5 gi|557694340|ref|YP_008797394.1| - 0.13 11.5 0.4 3.7 6.8 0.0 3.0 3 0 0 3 3 3 0 Sphingolipid Delta4-desaturase (DES) DNA_ligase_OB_2 PF14743.1 gi|557694340|ref|YP_008797394.1| - 0.16 11.6 0.7 0.32 10.6 0.0 1.9 2 0 0 2 2 2 0 DNA ligase OB-like domain DUF131 PF01998.12 gi|557694341|ref|YP_008797395.1| - 0.0034 16.7 4.3 0.0034 16.7 3.0 2.2 1 1 1 2 2 2 1 Protein of unknown function DUF131 Baculo_11_kDa PF06143.6 gi|557694341|ref|YP_008797395.1| - 0.1 11.9 6.6 0.18 11.2 0.1 2.1 2 0 0 2 2 2 0 Baculovirus 11 kDa family Virul_fac_BrkB PF03631.10 gi|557694341|ref|YP_008797395.1| - 0.12 11.6 9.9 0.13 11.6 6.8 1.0 1 0 0 1 1 1 0 Virulence factor BrkB DUF4118 PF13493.1 gi|557694341|ref|YP_008797395.1| - 0.88 9.8 8.9 0.99 9.6 6.2 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4118) ABC2_membrane_2 PF12679.2 gi|557694341|ref|YP_008797395.1| - 2.2 7.0 10.1 2.6 6.8 7.0 1.1 1 0 0 1 1 1 0 ABC-2 family transporter protein Na_Ca_ex PF01699.19 gi|557694341|ref|YP_008797395.1| - 2.7 7.6 8.8 0.079 12.5 0.9 1.9 1 1 1 2 2 2 0 Sodium/calcium exchanger protein O-ag_pol_Wzy PF14296.1 gi|557694341|ref|YP_008797395.1| - 2.9 6.3 6.2 3.2 6.2 4.3 1.0 1 0 0 1 1 1 0 O-antigen polysaccharide polymerase Wzy TrmB PF01978.14 gi|557694342|ref|YP_008797396.1| - 3.5e-24 84.2 0.4 2.1e-23 81.8 0.0 2.1 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB Regulator_TrmB PF11495.3 gi|557694342|ref|YP_008797396.1| - 4e-08 32.5 0.2 6.1e-08 31.9 0.1 1.3 1 0 0 1 1 1 1 Archaeal transcriptional regulator TrmB Rrf2 PF02082.15 gi|557694342|ref|YP_008797396.1| - 0.00062 19.8 0.0 0.0018 18.3 0.0 1.8 1 0 0 1 1 1 1 Transcriptional regulator Penicillinase_R PF03965.11 gi|557694342|ref|YP_008797396.1| - 0.0015 18.6 0.0 0.0044 17.0 0.0 1.9 1 1 0 1 1 1 1 Penicillinase repressor HTH_IclR PF09339.5 gi|557694342|ref|YP_008797396.1| - 0.022 14.3 0.0 0.049 13.2 0.0 1.6 1 0 0 1 1 1 0 IclR helix-turn-helix domain PadR PF03551.9 gi|557694342|ref|YP_008797396.1| - 0.083 12.6 0.0 0.18 11.5 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family HTH_27 PF13463.1 gi|557694342|ref|YP_008797396.1| - 0.12 12.6 0.0 0.32 11.3 0.0 1.7 1 0 0 1 1 1 0 Winged helix DNA-binding domain QueT PF06177.6 gi|557694343|ref|YP_008797397.1| - 3.9e-27 95.1 17.5 4.4e-27 94.9 12.1 1.1 1 0 0 1 1 1 1 QueT transporter KaiC PF06745.8 gi|557694344|ref|YP_008797398.1| - 7.9e-19 67.6 0.0 9.8e-19 67.3 0.0 1.1 1 0 0 1 1 1 1 KaiC AAA_17 PF13207.1 gi|557694344|ref|YP_008797398.1| - 4.6e-05 24.2 0.0 7.6e-05 23.5 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|557694344|ref|YP_008797398.1| - 0.0003 20.8 0.2 0.00066 19.7 0.2 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_25 PF13481.1 gi|557694344|ref|YP_008797398.1| - 0.00071 19.0 0.0 0.0011 18.4 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|557694344|ref|YP_008797398.1| - 0.00095 18.8 0.1 0.0027 17.4 0.1 1.8 1 0 0 1 1 1 1 Part of AAA domain AAA_10 PF12846.2 gi|557694344|ref|YP_008797398.1| - 0.0021 17.5 0.0 0.0033 16.9 0.0 1.3 1 1 0 1 1 1 1 AAA-like domain ABC_tran PF00005.22 gi|557694344|ref|YP_008797398.1| - 0.003 17.8 0.0 0.0044 17.3 0.0 1.3 1 0 0 1 1 1 1 ABC transporter MobB PF03205.9 gi|557694344|ref|YP_008797398.1| - 0.0073 16.0 0.0 0.014 15.1 0.0 1.5 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_33 PF13671.1 gi|557694344|ref|YP_008797398.1| - 0.011 15.6 0.0 0.017 15.0 0.0 1.3 1 0 0 1 1 1 0 AAA domain NACHT PF05729.7 gi|557694344|ref|YP_008797398.1| - 0.024 14.3 0.1 0.22 11.1 0.0 2.2 1 1 0 1 1 1 0 NACHT domain AAA_29 PF13555.1 gi|557694344|ref|YP_008797398.1| - 0.036 13.5 0.0 0.097 12.2 0.0 1.7 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_22 PF13401.1 gi|557694344|ref|YP_008797398.1| - 0.069 13.2 0.0 0.13 12.3 0.0 1.4 1 0 0 1 1 1 0 AAA domain DUF258 PF03193.11 gi|557694344|ref|YP_008797398.1| - 0.077 12.1 0.0 0.12 11.5 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 ATP_bind_1 PF03029.12 gi|557694344|ref|YP_008797398.1| - 0.1 12.1 0.0 0.19 11.2 0.0 1.4 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein IstB_IS21 PF01695.12 gi|557694344|ref|YP_008797398.1| - 0.12 11.7 0.0 0.22 10.9 0.0 1.3 1 0 0 1 1 1 0 IstB-like ATP binding protein SRP54 PF00448.17 gi|557694344|ref|YP_008797398.1| - 0.13 11.7 0.0 0.21 11.0 0.0 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain HEPN PF05168.9 gi|557694345|ref|YP_008797399.1| - 4.4e-25 87.8 0.1 5.1e-25 87.6 0.1 1.0 1 0 0 1 1 1 1 HEPN domain TPR_11 PF13414.1 gi|557694345|ref|YP_008797399.1| - 0.017 14.7 0.0 0.029 13.9 0.0 1.5 1 1 0 1 1 1 0 TPR repeat TPR_2 PF07719.12 gi|557694345|ref|YP_008797399.1| - 0.05 13.5 0.2 0.28 11.1 0.0 2.2 2 1 0 3 3 3 0 Tetratricopeptide repeat NTP_transf_2 PF01909.18 gi|557694346|ref|YP_008797400.1| - 1.8e-11 44.2 0.0 2.1e-11 44.0 0.0 1.2 1 0 0 1 1 1 1 Nucleotidyltransferase domain DUF294 PF03445.8 gi|557694346|ref|YP_008797400.1| - 0.00057 19.5 0.0 0.00083 18.9 0.0 1.3 1 0 0 1 1 1 1 Putative nucleotidyltransferase DUF294 DNA_pol_B_palm PF14792.1 gi|557694346|ref|YP_008797400.1| - 0.0082 16.1 0.0 0.01 15.9 0.0 1.1 1 0 0 1 1 1 1 DNA polymerase beta palm V-SNARE PF05008.10 gi|557694346|ref|YP_008797400.1| - 0.032 14.3 0.5 0.056 13.6 0.1 1.6 2 0 0 2 2 2 0 Vesicle transport v-SNARE protein N-terminus DUF4279 PF14106.1 gi|557694346|ref|YP_008797400.1| - 0.041 13.7 0.0 0.054 13.3 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4279) Peripla_BP_2 PF01497.13 gi|557694346|ref|YP_008797400.1| - 0.12 11.5 0.0 0.16 11.0 0.0 1.2 1 0 0 1 1 1 0 Periplasmic binding protein Radical_SAM PF04055.16 gi|557694347|ref|YP_008797401.1| - 6.6e-23 81.6 0.1 6.6e-23 81.6 0.1 1.8 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|557694347|ref|YP_008797401.1| - 1.6e-08 34.7 0.0 3.6e-08 33.6 0.0 1.6 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|557694347|ref|YP_008797401.1| - 2.4e-08 34.0 0.0 2.4e-08 34.0 0.0 1.9 2 0 0 2 2 2 1 4Fe-4S single cluster domain KaiC PF06745.8 gi|557694348|ref|YP_008797402.1| - 1.7e-07 30.6 0.0 3.3e-07 29.6 0.0 1.4 1 0 0 1 1 1 1 KaiC ChlI PF13541.1 gi|557694348|ref|YP_008797402.1| - 2e-06 27.3 0.0 5.2e-06 25.9 0.0 1.7 1 0 0 1 1 1 1 Subunit ChlI of Mg-chelatase AAA_25 PF13481.1 gi|557694348|ref|YP_008797402.1| - 0.0031 16.9 0.0 0.0054 16.1 0.0 1.4 1 0 0 1 1 1 1 AAA domain EF-1_beta_acid PF10587.4 gi|557694348|ref|YP_008797402.1| - 0.5 10.5 4.2 1.5 9.0 1.3 2.4 2 0 0 2 2 2 0 Eukaryotic elongation factor 1 beta central acidic region LAGLIDADG_3 PF14528.1 gi|557694350|ref|YP_008797404.1| - 0.00074 19.7 0.0 0.054 13.7 0.0 2.5 2 0 0 2 2 2 1 LAGLIDADG-like domain NERD PF08378.6 gi|557694350|ref|YP_008797404.1| - 0.093 13.0 0.0 0.23 11.7 0.0 1.8 1 0 0 1 1 1 0 Nuclease-related domain Phage_int_SAM_4 PF13495.1 gi|557694350|ref|YP_008797404.1| - 0.1 12.9 0.3 1.1 9.6 0.0 2.5 2 0 0 2 2 2 0 Phage integrase, N-terminal SAM-like domain DUF3681 PF12442.3 gi|557694351|ref|YP_008797405.1| - 0.0054 16.8 0.2 0.012 15.7 0.2 1.7 1 0 0 1 1 1 1 Protein of unknown function (DUF3681) HemN_C PF06969.11 gi|557694351|ref|YP_008797405.1| - 0.0059 16.6 0.2 0.016 15.2 0.2 1.7 1 0 0 1 1 1 1 HemN C-terminal domain HTH_45 PF14947.1 gi|557694351|ref|YP_008797405.1| - 0.13 12.0 0.4 0.75 9.6 0.1 2.1 1 1 1 2 2 2 0 Winged helix-turn-helix DUF217 PF02697.9 gi|557694353|ref|YP_008797407.1| - 5.4e-19 68.2 0.2 5.8e-19 68.1 0.1 1.0 1 0 0 1 1 1 1 Uncharacterized ACR, COG1753 SeqA PF03925.8 gi|557694353|ref|YP_008797407.1| - 0.007 16.0 0.0 0.0077 15.9 0.0 1.0 1 0 0 1 1 1 1 SeqA protein PIN PF01850.16 gi|557694354|ref|YP_008797408.1| - 7.5e-07 29.5 0.1 7.5e-07 29.5 0.1 1.0 1 0 0 1 1 1 1 PIN domain Pterin_4a PF01329.14 gi|557694355|ref|YP_008797409.1| - 6.7e-34 115.5 0.2 7.9e-34 115.3 0.1 1.1 1 0 0 1 1 1 1 Pterin 4 alpha carbinolamine dehydratase PAG PF15347.1 gi|557694355|ref|YP_008797409.1| - 0.02 14.0 0.0 0.023 13.7 0.0 1.1 1 0 0 1 1 1 0 Phosphoprotein associated with glycosphingolipid-enriched Glycos_transf_3 PF00591.16 gi|557694356|ref|YP_008797410.1| - 1.3e-72 244.3 0.0 1.6e-72 243.9 0.0 1.1 1 0 0 1 1 1 1 Glycosyl transferase family, a/b domain Glycos_trans_3N PF02885.12 gi|557694356|ref|YP_008797410.1| - 6.2e-14 51.3 0.0 2e-13 49.6 0.0 1.9 1 0 0 1 1 1 1 Glycosyl transferase family, helical bundle domain DUF3349 PF11829.3 gi|557694356|ref|YP_008797410.1| - 0.029 14.8 0.1 0.26 11.7 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3349) IGPS PF00218.16 gi|557694357|ref|YP_008797411.1| - 9.6e-48 162.4 0.0 1.1e-47 162.2 0.0 1.0 1 0 0 1 1 1 1 Indole-3-glycerol phosphate synthase DUF2787 PF10980.3 gi|557694357|ref|YP_008797411.1| - 0.02 14.8 0.0 0.028 14.3 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2787) His_biosynth PF00977.16 gi|557694357|ref|YP_008797411.1| - 0.07 12.3 0.0 10 5.3 0.0 2.1 2 0 0 2 2 2 0 Histidine biosynthesis protein PRAI PF00697.17 gi|557694358|ref|YP_008797412.1| - 5.9e-27 94.5 0.0 7e-27 94.2 0.0 1.1 1 0 0 1 1 1 1 N-(5'phosphoribosyl)anthranilate (PRA) isomerase PALP PF00291.20 gi|557694359|ref|YP_008797413.1| - 8.6e-45 153.2 0.1 1e-44 153.0 0.0 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Trp_syntA PF00290.15 gi|557694360|ref|YP_008797414.1| - 1.1e-36 125.7 0.0 1.4e-36 125.3 0.0 1.0 1 0 0 1 1 1 1 Tryptophan synthase alpha chain ThiG PF05690.9 gi|557694360|ref|YP_008797414.1| - 0.0065 15.5 0.4 0.01 14.9 0.3 1.2 1 0 0 1 1 1 1 Thiazole biosynthesis protein ThiG HMGL-like PF00682.14 gi|557694360|ref|YP_008797414.1| - 0.043 13.4 0.0 0.13 11.8 0.0 1.8 1 1 1 2 2 2 0 HMGL-like His_biosynth PF00977.16 gi|557694360|ref|YP_008797414.1| - 0.12 11.6 0.2 0.23 10.7 0.1 1.4 1 0 0 1 1 1 0 Histidine biosynthesis protein PcrB PF01884.12 gi|557694360|ref|YP_008797414.1| - 0.14 11.3 0.2 0.46 9.6 0.1 1.7 2 0 0 2 2 2 0 PcrB family PIN PF01850.16 gi|557694363|ref|YP_008797417.1| - 4.9e-09 36.5 0.2 5.7e-09 36.3 0.2 1.1 1 0 0 1 1 1 1 PIN domain Cas_NE0113 PF09623.5 gi|557694365|ref|YP_008797419.1| - 1.3e-20 73.8 0.3 2.8e-20 72.7 0.2 1.5 1 1 0 1 1 1 1 CRISPR-associated protein NE0113 (Cas_NE0113) Cas_Cas02710 PF09670.5 gi|557694365|ref|YP_008797419.1| - 0.00017 20.3 0.0 0.00023 19.9 0.0 1.2 1 0 0 1 1 1 1 CRISPR-associated protein (Cas_Cas02710) Cas_APE2256 PF09651.5 gi|557694365|ref|YP_008797419.1| - 0.00037 20.2 0.1 0.0006 19.5 0.1 1.4 1 0 0 1 1 1 1 CRISPR-associated protein (Cas_APE2256) ADP_ribosyl_GH PF03747.9 gi|557694366|ref|YP_008797420.1| - 0.035 13.8 0.5 0.062 13.0 0.3 1.3 1 0 0 1 1 1 0 ADP-ribosylglycohydrolase DUF4398 PF14346.1 gi|557694366|ref|YP_008797420.1| - 0.052 13.5 3.1 0.15 12.1 2.1 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF4398) DNA_primase_lrg PF04104.9 gi|557694368|ref|YP_008797422.1| - 1.1e-24 87.1 0.1 1.9e-24 86.3 0.1 1.4 1 0 0 1 1 1 1 Eukaryotic and archaeal DNA primase, large subunit COG6 PF06419.6 gi|557694368|ref|YP_008797422.1| - 0.014 13.5 0.0 0.028 12.5 0.0 1.5 1 0 0 1 1 1 0 Conserved oligomeric complex COG6 Hep_core_N PF08290.6 gi|557694368|ref|YP_008797422.1| - 0.032 13.6 0.1 0.065 12.6 0.1 1.4 1 0 0 1 1 1 0 Hepatitis core protein, putative zinc finger AAA_10 PF12846.2 gi|557694369|ref|YP_008797423.1| - 8.3e-17 61.5 0.0 1.7e-08 34.3 0.0 2.2 2 0 0 2 2 2 2 AAA-like domain DUF87 PF01935.12 gi|557694369|ref|YP_008797423.1| - 3e-10 40.2 0.0 6.2e-10 39.2 0.0 1.5 1 1 0 1 1 1 1 Domain of unknown function DUF87 TrwB_AAD_bind PF10412.4 gi|557694369|ref|YP_008797423.1| - 2.1e-07 29.9 0.0 3.7e-07 29.1 0.0 1.3 1 0 0 1 1 1 1 Type IV secretion-system coupling protein DNA-binding domain MobB PF03205.9 gi|557694369|ref|YP_008797423.1| - 9.4e-07 28.6 0.0 1.9e-06 27.6 0.0 1.5 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_16 PF13191.1 gi|557694369|ref|YP_008797423.1| - 5.2e-06 26.5 0.1 9.2e-06 25.7 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain DUF853 PF05872.7 gi|557694369|ref|YP_008797423.1| - 1.7e-05 23.4 0.0 0.00012 20.5 0.0 2.1 2 0 0 2 2 2 1 Bacterial protein of unknown function (DUF853) T2SE PF00437.15 gi|557694369|ref|YP_008797423.1| - 2.3e-05 23.4 0.0 4e-05 22.6 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein FtsK_SpoIIIE PF01580.13 gi|557694369|ref|YP_008797423.1| - 0.00027 20.5 0.0 0.00047 19.6 0.0 1.3 1 0 0 1 1 1 1 FtsK/SpoIIIE family AAA_22 PF13401.1 gi|557694369|ref|YP_008797423.1| - 0.0004 20.5 0.0 0.027 14.6 0.0 2.5 2 1 0 2 2 2 1 AAA domain DUF815 PF05673.8 gi|557694369|ref|YP_008797423.1| - 0.00066 18.6 0.0 0.001 18.0 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF815) Arch_ATPase PF01637.13 gi|557694369|ref|YP_008797423.1| - 0.0017 18.1 0.1 0.01 15.5 0.0 2.1 1 1 0 1 1 1 1 Archaeal ATPase NTPase_1 PF03266.10 gi|557694369|ref|YP_008797423.1| - 0.0049 16.5 0.2 0.028 14.1 0.0 2.1 2 0 0 2 2 2 1 NTPase LpxK PF02606.9 gi|557694369|ref|YP_008797423.1| - 0.0073 15.3 0.0 0.012 14.5 0.0 1.2 1 0 0 1 1 1 1 Tetraacyldisaccharide-1-P 4'-kinase Zeta_toxin PF06414.7 gi|557694369|ref|YP_008797423.1| - 0.01 14.9 0.0 0.02 13.9 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin cobW PF02492.14 gi|557694369|ref|YP_008797423.1| - 0.014 14.8 0.0 0.026 13.9 0.0 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_5 PF07728.9 gi|557694369|ref|YP_008797423.1| - 0.02 14.6 0.0 0.046 13.4 0.0 1.6 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_30 PF13604.1 gi|557694369|ref|YP_008797423.1| - 0.02 14.4 0.0 0.042 13.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain Miro PF08477.8 gi|557694369|ref|YP_008797423.1| - 0.023 15.1 0.1 0.047 14.1 0.0 1.6 1 0 0 1 1 1 0 Miro-like protein AAA_17 PF13207.1 gi|557694369|ref|YP_008797423.1| - 0.039 14.7 0.1 0.11 13.3 0.1 1.9 1 1 0 1 1 1 0 AAA domain PhoH PF02562.11 gi|557694369|ref|YP_008797423.1| - 0.042 13.0 0.0 0.44 9.7 0.0 2.1 2 0 0 2 2 2 0 PhoH-like protein ATP_bind_1 PF03029.12 gi|557694369|ref|YP_008797423.1| - 0.056 12.9 0.0 0.093 12.2 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein AAA PF00004.24 gi|557694369|ref|YP_008797423.1| - 0.061 13.5 0.0 2.4 8.3 0.0 2.5 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) ArgK PF03308.11 gi|557694369|ref|YP_008797423.1| - 0.087 11.5 0.0 0.16 10.6 0.0 1.4 1 0 0 1 1 1 0 ArgK protein AAA_29 PF13555.1 gi|557694369|ref|YP_008797423.1| - 0.093 12.2 0.0 0.2 11.1 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain RMP PF14996.1 gi|557694369|ref|YP_008797423.1| - 0.11 12.4 0.0 0.16 11.8 0.0 1.3 1 0 0 1 1 1 0 Retinal Maintenance AAA_19 PF13245.1 gi|557694369|ref|YP_008797423.1| - 0.11 12.2 0.0 0.27 11.0 0.0 1.7 1 0 0 1 1 1 0 Part of AAA domain SRP54 PF00448.17 gi|557694369|ref|YP_008797423.1| - 0.11 11.9 0.0 0.21 11.0 0.0 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain PduV-EutP PF10662.4 gi|557694369|ref|YP_008797423.1| - 0.12 11.8 0.0 0.21 11.0 0.0 1.4 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation NACHT PF05729.7 gi|557694369|ref|YP_008797423.1| - 0.12 12.0 0.0 0.24 11.0 0.0 1.5 1 0 0 1 1 1 0 NACHT domain ResIII PF04851.10 gi|557694369|ref|YP_008797423.1| - 0.12 12.1 0.0 0.31 10.8 0.0 1.6 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit Zot PF05707.7 gi|557694369|ref|YP_008797423.1| - 0.17 11.3 0.0 11 5.3 0.0 2.2 2 0 0 2 2 2 0 Zonular occludens toxin (Zot) PrsW-protease PF13367.1 gi|557694370|ref|YP_008797424.1| - 0.045 12.9 2.5 0.05 12.7 1.7 1.1 1 0 0 1 1 1 0 Protease prsW family Bac_export_1 PF01311.15 gi|557694370|ref|YP_008797424.1| - 0.076 12.2 3.6 0.081 12.1 2.5 1.1 1 0 0 1 1 1 0 Bacterial export proteins, family 1 BTP PF05232.7 gi|557694370|ref|YP_008797424.1| - 0.63 9.8 3.6 0.96 9.2 2.0 1.7 1 1 1 2 2 2 0 Bacterial Transmembrane Pair family DUF3082 PF11282.3 gi|557694370|ref|YP_008797424.1| - 4.6 7.3 7.0 1.1 9.3 1.9 2.1 2 1 0 2 2 2 0 Protein of unknown function (DUF3082) DUF1887 PF09002.6 gi|557694371|ref|YP_008797425.1| - 0.0083 14.5 0.0 0.012 14.0 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1887) IFT20 PF14931.1 gi|557694372|ref|YP_008797426.1| - 0.065 13.1 0.0 0.1 12.4 0.0 1.3 1 0 0 1 1 1 0 Intraflagellar transport complex B, subunit 20 SMC_N PF02463.14 gi|557694373|ref|YP_008797427.1| - 1.9e-26 92.6 0.0 3.1e-25 88.7 0.0 2.2 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.1 gi|557694373|ref|YP_008797427.1| - 4.7e-24 85.8 0.2 4.7e-24 85.8 0.1 3.3 2 1 0 2 2 1 1 AAA domain AAA_21 PF13304.1 gi|557694373|ref|YP_008797427.1| - 6e-14 52.6 0.0 5.6e-07 29.8 0.0 2.5 2 0 0 2 2 2 2 AAA domain AAA_15 PF13175.1 gi|557694373|ref|YP_008797427.1| - 2.9e-10 39.7 0.0 1.3e-05 24.4 0.0 2.4 2 0 0 2 2 2 2 AAA ATPase domain AAA_27 PF13514.1 gi|557694373|ref|YP_008797427.1| - 1.1e-08 33.4 45.9 0.00049 17.9 0.0 4.3 3 1 0 4 4 4 4 AAA domain AAA_29 PF13555.1 gi|557694373|ref|YP_008797427.1| - 2.1e-08 33.5 0.0 3.8e-08 32.7 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain SbcCD_C PF13558.1 gi|557694373|ref|YP_008797427.1| - 5.1e-08 32.7 0.0 1.2e-07 31.5 0.0 1.6 1 0 0 1 1 1 1 Putative exonuclease SbcCD, C subunit ABC_tran PF00005.22 gi|557694373|ref|YP_008797427.1| - 1.5e-05 25.2 0.2 0.043 14.1 0.3 3.6 2 2 0 2 2 2 1 ABC transporter AAA_13 PF13166.1 gi|557694373|ref|YP_008797427.1| - 1.7e-05 23.5 15.7 0.0059 15.1 1.9 4.4 4 1 0 4 4 4 2 AAA domain Seryl_tRNA_N PF02403.17 gi|557694373|ref|YP_008797427.1| - 0.00028 20.8 36.0 0.26 11.2 2.3 5.5 3 2 2 5 5 5 4 Seryl-tRNA synthetase N-terminal domain Syntaxin_2 PF14523.1 gi|557694373|ref|YP_008797427.1| - 0.015 15.3 11.9 0.35 10.9 0.0 4.5 3 1 0 3 3 3 0 Syntaxin-like protein Med4 PF10018.4 gi|557694373|ref|YP_008797427.1| - 0.016 14.6 0.5 0.016 14.6 0.4 4.2 5 0 0 5 5 5 0 Vitamin-D-receptor interacting Mediator subunit 4 DUF258 PF03193.11 gi|557694373|ref|YP_008797427.1| - 0.053 12.7 0.0 0.13 11.4 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function, DUF258 IncA PF04156.9 gi|557694373|ref|YP_008797427.1| - 0.081 12.5 50.2 0.098 12.2 15.3 4.3 2 2 2 4 4 4 0 IncA protein DivIC PF04977.10 gi|557694373|ref|YP_008797427.1| - 0.096 12.1 31.8 0.018 14.5 2.2 5.7 5 0 0 5 5 5 0 Septum formation initiator Halogen_Hydrol PF10112.4 gi|557694373|ref|YP_008797427.1| - 0.096 12.0 4.3 0.59 9.5 0.5 2.7 2 0 0 2 2 2 0 5-bromo-4-chloroindolyl phosphate hydrolysis protein AAA_25 PF13481.1 gi|557694373|ref|YP_008797427.1| - 0.18 11.2 0.0 0.18 11.2 0.0 4.3 5 1 0 5 5 5 0 AAA domain Spc7 PF08317.6 gi|557694373|ref|YP_008797427.1| - 0.25 9.9 33.7 0.057 12.0 2.7 3.9 2 1 2 4 4 4 0 Spc7 kinetochore protein STAT_alpha PF01017.15 gi|557694373|ref|YP_008797427.1| - 0.57 9.8 9.0 2.6 7.7 0.6 3.6 3 2 0 3 3 3 0 STAT protein, all-alpha domain DUF3829 PF12889.2 gi|557694373|ref|YP_008797427.1| - 1.7 7.8 7.8 6.3 5.8 0.0 3.0 2 1 1 3 3 3 0 Protein of unknown function (DUF3829) ADIP PF11559.3 gi|557694373|ref|YP_008797427.1| - 3.1 7.6 25.8 9 6.1 0.1 4.5 4 0 0 4 4 4 0 Afadin- and alpha -actinin-Binding Atg14 PF10186.4 gi|557694373|ref|YP_008797427.1| - 5.3 5.8 31.6 0.1 11.4 4.0 4.1 3 1 1 4 4 4 0 UV radiation resistance protein and autophagy-related subunit 14 Fib_alpha PF08702.5 gi|557694373|ref|YP_008797427.1| - 5.5 7.1 11.9 7.3 6.7 0.1 4.2 3 1 1 4 4 4 0 Fibrinogen alpha/beta chain family AAA_22 PF13401.1 gi|557694373|ref|YP_008797427.1| - 6.7 6.8 6.8 3.4 7.8 0.0 3.6 3 1 0 4 4 4 0 AAA domain tRNA-synt_His PF13393.1 gi|557694373|ref|YP_008797427.1| - 9.2 5.2 22.0 0.32 10.0 0.4 5.0 3 3 3 6 6 6 0 Histidyl-tRNA synthetase FlaC_arch PF05377.6 gi|557694373|ref|YP_008797427.1| - 9.3 6.2 18.4 12 5.9 0.7 5.5 4 2 1 5 5 4 0 Flagella accessory protein C (FlaC) Metallophos_2 PF12850.2 gi|557694374|ref|YP_008797428.1| - 1.7e-13 50.6 0.3 5.6e-13 49.0 0.2 1.9 2 1 0 2 2 2 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|557694374|ref|YP_008797428.1| - 5.3e-09 35.7 1.2 2.1e-08 33.7 0.8 1.9 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase TmoB PF06234.7 gi|557694374|ref|YP_008797428.1| - 0.02 14.7 0.1 1.6 8.6 0.0 2.6 2 0 0 2 2 2 0 Toluene-4-monooxygenase system protein B (TmoB) GCV_T PF01571.16 gi|557694374|ref|YP_008797428.1| - 0.083 12.2 0.0 0.17 11.2 0.0 1.4 1 0 0 1 1 1 0 Aminomethyltransferase folate-binding domain Tnp_DNA_bind PF14706.1 gi|557694374|ref|YP_008797428.1| - 0.15 11.7 0.0 1.3 8.7 0.0 2.2 2 0 0 2 2 2 0 Transposase DNA-binding DUF87 PF01935.12 gi|557694375|ref|YP_008797429.1| - 9.9e-35 120.4 0.9 1.4e-34 119.9 0.6 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF87 AAA_10 PF12846.2 gi|557694375|ref|YP_008797429.1| - 2.1e-19 70.0 0.1 9.2e-17 61.4 0.1 2.2 1 1 0 1 1 1 1 AAA-like domain FtsK_SpoIIIE PF01580.13 gi|557694375|ref|YP_008797429.1| - 1.6e-07 30.9 0.0 4.4e-07 29.5 0.0 1.7 1 1 0 1 1 1 1 FtsK/SpoIIIE family TrwB_AAD_bind PF10412.4 gi|557694375|ref|YP_008797429.1| - 0.00023 19.9 0.1 0.0075 14.9 0.0 2.5 3 0 0 3 3 3 1 Type IV secretion-system coupling protein DNA-binding domain DUF853 PF05872.7 gi|557694375|ref|YP_008797429.1| - 0.00038 18.9 0.1 0.035 12.4 0.0 2.2 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) Tox-ART-HYE1 PF15634.1 gi|557694375|ref|YP_008797429.1| - 0.0022 17.0 0.1 0.0033 16.4 0.1 1.2 1 0 0 1 1 1 1 HYE1 signature containing ADP-ribosyltransferase ABC_tran PF00005.22 gi|557694375|ref|YP_008797429.1| - 0.0068 16.6 0.0 0.013 15.8 0.0 1.5 1 0 0 1 1 1 1 ABC transporter HAS-barrel PF09378.5 gi|557694375|ref|YP_008797429.1| - 0.024 14.5 1.7 0.065 13.1 0.2 2.6 2 1 0 2 2 2 0 HAS barrel domain DUF188 PF02639.9 gi|557694375|ref|YP_008797429.1| - 0.029 13.8 0.0 0.075 12.4 0.0 1.6 1 0 0 1 1 1 0 Uncharacterized BCR, YaiI/YqxD family COG1671 NurA PF09376.5 gi|557694376|ref|YP_008797430.1| - 1.1e-26 93.8 0.8 1.5e-26 93.3 0.6 1.2 1 0 0 1 1 1 1 NurA domain Helicase_C PF00271.26 gi|557694380|ref|YP_008797434.1| - 1.7e-20 72.6 0.0 4.7e-20 71.2 0.0 1.8 1 0 0 1 1 1 1 Helicase conserved C-terminal domain DEAD PF00270.24 gi|557694380|ref|YP_008797434.1| - 3.2e-19 69.0 0.0 4.7e-18 65.2 0.0 2.5 3 0 0 3 3 3 1 DEAD/DEAH box helicase ResIII PF04851.10 gi|557694380|ref|YP_008797434.1| - 2.1e-13 50.5 0.0 5e-13 49.2 0.0 1.7 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit Zot PF05707.7 gi|557694380|ref|YP_008797434.1| - 0.024 14.1 0.5 0.44 9.9 0.1 3.2 2 1 1 3 3 3 0 Zonular occludens toxin (Zot) DUF4404 PF14357.1 gi|557694380|ref|YP_008797434.1| - 0.12 12.8 1.7 0.39 11.1 1.2 1.9 1 0 0 1 1 1 0 Domain of unknown function (DUF4404) Hjc PF01870.13 gi|557694381|ref|YP_008797435.1| - 2e-10 40.1 0.1 2.2e-10 39.9 0.1 1.1 1 0 0 1 1 1 1 Archaeal holliday junction resolvase (hjc) VRR_NUC PF08774.6 gi|557694381|ref|YP_008797435.1| - 2.1e-05 24.4 0.2 2.3e-05 24.3 0.1 1.1 1 0 0 1 1 1 1 VRR-NUC domain NERD PF08378.6 gi|557694381|ref|YP_008797435.1| - 0.009 16.2 0.0 0.013 15.7 0.0 1.3 1 1 0 1 1 1 1 Nuclease-related domain Mrr_cat PF04471.7 gi|557694381|ref|YP_008797435.1| - 0.019 14.7 0.2 0.045 13.5 0.1 1.6 1 1 0 1 1 1 0 Restriction endonuclease DUF996 PF06195.8 gi|557694383|ref|YP_008797437.1| - 2e-16 60.2 11.2 2.5e-16 59.9 7.8 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF996) DUF2371 PF10177.4 gi|557694383|ref|YP_008797437.1| - 0.0046 16.8 1.0 0.011 15.6 0.7 1.6 1 0 0 1 1 1 1 Uncharacterised conserved protein (DUF2371) DUF2964 PF11177.3 gi|557694383|ref|YP_008797437.1| - 0.0064 16.4 1.9 0.0064 16.4 1.3 3.1 3 0 0 3 3 3 1 Protein of unknown function (DUF2964) DUF997 PF06196.7 gi|557694383|ref|YP_008797437.1| - 0.018 14.5 1.0 0.018 14.5 0.7 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF997) DUF4481 PF14800.1 gi|557694383|ref|YP_008797437.1| - 0.12 11.2 2.7 0.093 11.6 1.2 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4481) DUF973 PF06157.6 gi|557694383|ref|YP_008797437.1| - 0.15 10.9 15.7 1.3 7.9 10.7 2.2 1 1 0 1 1 1 0 Protein of unknown function (DUF973) DUF3816 PF12822.2 gi|557694383|ref|YP_008797437.1| - 0.93 9.3 16.4 1.3 8.8 11.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3816) ABC2_membrane_5 PF13346.1 gi|557694383|ref|YP_008797437.1| - 1 8.6 15.1 4.1 6.6 10.4 1.9 1 1 0 1 1 1 0 ABC-2 family transporter protein MtrF PF09472.5 gi|557694383|ref|YP_008797437.1| - 1.6 7.9 7.5 0.84 8.9 1.3 2.5 2 0 0 2 2 2 0 Tetrahydromethanopterin S-methyltransferase, F subunit (MtrF) DUF1212 PF06738.7 gi|557694383|ref|YP_008797437.1| - 3.1 7.2 11.3 14 5.1 7.9 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF1212) 7tm_6 PF02949.15 gi|557694383|ref|YP_008797437.1| - 3.4 6.4 7.4 0.18 10.6 0.5 1.9 1 1 1 2 2 2 0 7tm Odorant receptor TFIIB PF00382.14 gi|557694384|ref|YP_008797438.1| - 2.3e-12 46.5 2.4 2.4e-10 40.0 0.0 3.1 2 1 0 2 2 2 1 Transcription factor TFIIB repeat Cyclin_N PF00134.18 gi|557694384|ref|YP_008797438.1| - 0.009 15.5 0.1 0.19 11.2 0.0 2.2 1 1 1 2 2 2 1 Cyclin, N-terminal domain HD_4 PF13328.1 gi|557694384|ref|YP_008797438.1| - 0.01 15.5 0.9 0.28 10.8 0.1 2.4 1 1 0 2 2 2 0 HD domain CH PF00307.26 gi|557694384|ref|YP_008797438.1| - 0.11 12.5 0.0 0.21 11.6 0.0 1.6 1 1 0 1 1 1 0 Calponin homology (CH) domain Rrf2 PF02082.15 gi|557694384|ref|YP_008797438.1| - 0.16 12.1 0.7 5.1 7.2 0.1 3.0 2 1 1 3 3 3 0 Transcriptional regulator Se-cys_synth_N PF12390.3 gi|557694384|ref|YP_008797438.1| - 6.4 6.9 7.8 9.8 6.3 0.3 3.2 3 0 0 3 3 3 0 Selenocysteine synthase N terminal YqhR PF11085.3 gi|557694385|ref|YP_008797439.1| - 0.04 13.4 5.0 0.044 13.3 3.5 1.1 1 0 0 1 1 1 0 Conserved membrane protein YqhR PMP22_Claudin PF00822.15 gi|557694385|ref|YP_008797439.1| - 4.7 6.8 7.3 0.64 9.6 1.9 1.8 1 1 1 2 2 2 0 PMP-22/EMP/MP20/Claudin family AAA_10 PF12846.2 gi|557694386|ref|YP_008797440.1| - 1.6e-08 34.3 0.1 0.00032 20.2 0.0 2.2 1 1 0 2 2 2 2 AAA-like domain DUF87 PF01935.12 gi|557694386|ref|YP_008797440.1| - 2e-08 34.3 0.3 3.5e-08 33.5 0.2 1.5 1 1 0 1 1 1 1 Domain of unknown function DUF87 AAA PF00004.24 gi|557694386|ref|YP_008797440.1| - 1.9e-05 24.8 0.0 0.0076 16.4 0.0 2.4 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) FtsK_SpoIIIE PF01580.13 gi|557694386|ref|YP_008797440.1| - 2.6e-05 23.8 0.1 0.0083 15.6 0.0 2.3 2 0 0 2 2 2 2 FtsK/SpoIIIE family AAA_25 PF13481.1 gi|557694386|ref|YP_008797440.1| - 0.00016 21.1 0.2 0.0062 15.9 0.0 2.2 2 0 0 2 2 2 1 AAA domain TrwB_AAD_bind PF10412.4 gi|557694386|ref|YP_008797440.1| - 0.00022 19.9 0.0 0.00044 19.0 0.0 1.4 1 0 0 1 1 1 1 Type IV secretion-system coupling protein DNA-binding domain AAA_22 PF13401.1 gi|557694386|ref|YP_008797440.1| - 0.0033 17.5 0.1 0.2 11.8 0.0 2.5 1 1 0 1 1 1 1 AAA domain DUF2075 PF09848.4 gi|557694386|ref|YP_008797440.1| - 0.0079 15.2 0.0 0.014 14.3 0.0 1.4 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) AAA_14 PF13173.1 gi|557694386|ref|YP_008797440.1| - 0.0087 15.9 0.0 1.3 8.9 0.0 2.4 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|557694386|ref|YP_008797440.1| - 0.013 15.4 0.3 0.037 14.0 0.2 1.8 1 1 0 1 1 1 0 AAA ATPase domain T2SE PF00437.15 gi|557694386|ref|YP_008797440.1| - 0.04 12.8 0.0 0.068 12.0 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_19 PF13245.1 gi|557694386|ref|YP_008797440.1| - 0.04 13.6 0.0 0.084 12.6 0.0 1.5 1 0 0 1 1 1 0 Part of AAA domain ResIII PF04851.10 gi|557694386|ref|YP_008797440.1| - 0.054 13.3 0.1 6.3 6.5 0.0 2.2 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit Viral_helicase1 PF01443.13 gi|557694386|ref|YP_008797440.1| - 0.098 12.1 0.0 0.16 11.4 0.0 1.3 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase AAA_29 PF13555.1 gi|557694386|ref|YP_008797440.1| - 0.11 12.0 0.5 0.24 10.9 0.3 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain NACHT PF05729.7 gi|557694386|ref|YP_008797440.1| - 0.11 12.0 0.3 0.46 10.1 0.2 1.9 2 0 0 2 2 2 0 NACHT domain UvrD-helicase PF00580.16 gi|557694386|ref|YP_008797440.1| - 0.13 11.5 1.4 0.89 8.7 0.5 2.0 1 1 1 2 2 2 0 UvrD/REP helicase N-terminal domain ABC_tran PF00005.22 gi|557694386|ref|YP_008797440.1| - 0.14 12.4 0.1 0.26 11.5 0.1 1.5 1 1 0 1 1 1 0 ABC transporter Pox_A32 PF04665.7 gi|557694386|ref|YP_008797440.1| - 0.35 10.1 1.0 0.49 9.6 0.1 1.6 2 0 0 2 2 2 0 Poxvirus A32 protein NurA PF09376.5 gi|557694387|ref|YP_008797441.1| - 4.3e-22 78.7 0.0 7.1e-22 78.0 0.0 1.3 1 0 0 1 1 1 1 NurA domain DnaJ PF00226.26 gi|557694388|ref|YP_008797442.1| - 5.6e-24 83.6 0.4 8.6e-24 83.0 0.3 1.3 1 0 0 1 1 1 1 DnaJ domain DUF1294 PF06961.8 gi|557694388|ref|YP_008797442.1| - 2.9e-17 62.3 2.3 7.6e-17 61.0 1.6 1.8 1 0 0 1 1 1 1 Protein of unknown function (DUF1294) YopD PF05844.7 gi|557694388|ref|YP_008797442.1| - 0.11 11.5 0.0 0.19 10.7 0.0 1.3 1 0 0 1 1 1 0 YopD protein DUF3353 PF11833.3 gi|557694388|ref|YP_008797442.1| - 0.15 11.5 3.1 9.2 5.6 1.0 2.8 3 0 0 3 3 3 0 Protein of unknown function (DUF3353) UPF0154 PF03672.8 gi|557694388|ref|YP_008797442.1| - 0.19 11.3 1.0 6.9 6.3 0.3 2.7 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0154) YqzM PF14141.1 gi|557694388|ref|YP_008797442.1| - 0.26 11.1 2.6 0.69 9.7 1.8 1.7 1 0 0 1 1 1 0 YqzM-like protein DUF4325 PF14213.1 gi|557694389|ref|YP_008797443.1| - 9.3e-09 34.8 0.2 1.5e-08 34.1 0.1 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4325) DUF1840 PF08895.6 gi|557694389|ref|YP_008797443.1| - 0.047 13.7 0.3 0.26 11.3 0.2 2.1 1 1 0 1 1 1 0 Domain of unknown function (DUF1840) STAS_2 PF13466.1 gi|557694389|ref|YP_008797443.1| - 0.057 13.4 0.0 0.16 12.0 0.0 1.7 1 1 0 1 1 1 0 STAS domain RasGEF PF00617.14 gi|557694389|ref|YP_008797443.1| - 0.086 12.5 0.1 0.11 12.2 0.1 1.1 1 0 0 1 1 1 0 RasGEF domain DUF3496 PF12001.3 gi|557694390|ref|YP_008797444.1| - 0.077 13.2 0.5 0.095 12.9 0.3 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3496) DUF1627 PF07789.7 gi|557694391|ref|YP_008797445.1| - 0.08 12.4 0.1 0.11 12.0 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1627) zf-ribbon_3 PF13248.1 gi|557694392|ref|YP_008797446.1| - 0.00016 20.7 1.1 0.00033 19.7 0.8 1.5 1 1 0 1 1 1 1 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|557694392|ref|YP_008797446.1| - 0.0006 19.2 1.0 0.0028 17.0 0.7 2.0 1 1 0 1 1 1 1 zinc-ribbon domain DZR PF12773.2 gi|557694392|ref|YP_008797446.1| - 0.0016 18.2 0.1 0.0024 17.6 0.1 1.3 1 0 0 1 1 1 1 Double zinc ribbon zf-NADH-PPase PF09297.6 gi|557694392|ref|YP_008797446.1| - 0.0019 17.6 1.5 0.0098 15.3 1.1 2.0 1 1 1 2 2 2 1 NADH pyrophosphatase zinc ribbon domain DNA_RNApol_7kD PF03604.8 gi|557694392|ref|YP_008797446.1| - 0.0038 16.6 0.4 0.017 14.5 0.3 1.9 1 1 1 2 2 2 2 DNA directed RNA polymerase, 7 kDa subunit TF_Zn_Ribbon PF08271.7 gi|557694392|ref|YP_008797446.1| - 0.0099 15.1 1.4 0.019 14.2 0.9 1.4 1 0 0 1 1 1 1 TFIIB zinc-binding PhnA_Zn_Ribbon PF08274.7 gi|557694392|ref|YP_008797446.1| - 0.015 15.0 1.0 0.031 14.0 0.7 1.5 1 0 0 1 1 1 0 PhnA Zinc-Ribbon Nudix_N_2 PF14803.1 gi|557694392|ref|YP_008797446.1| - 0.023 14.3 0.9 0.33 10.6 0.0 2.4 2 0 0 2 2 2 0 Nudix N-terminal UPF0547 PF10571.4 gi|557694392|ref|YP_008797446.1| - 0.036 13.7 2.5 0.072 12.7 1.8 1.4 1 0 0 1 1 1 0 Uncharacterised protein family UPF0547 Prok-RING_1 PF14446.1 gi|557694392|ref|YP_008797446.1| - 0.05 13.3 0.3 0.088 12.5 0.2 1.4 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 IBR PF01485.16 gi|557694392|ref|YP_008797446.1| - 0.056 13.3 0.2 0.096 12.5 0.1 1.4 1 0 0 1 1 1 0 IBR domain DNA_ligase_ZBD PF03119.11 gi|557694392|ref|YP_008797446.1| - 0.29 10.8 3.1 0.27 10.9 1.1 1.7 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain UBA PF00627.26 gi|557694393|ref|YP_008797447.1| - 0.033 14.0 0.1 1.1 9.1 0.0 2.6 3 0 0 3 3 3 0 UBA/TS-N domain PepSY_2 PF13670.1 gi|557694393|ref|YP_008797447.1| - 0.073 12.9 0.0 7.7 6.4 0.1 2.1 1 1 1 2 2 2 0 Peptidase propeptide and YPEB domain Abhydrolase_6 PF12697.2 gi|557694394|ref|YP_008797448.1| - 5e-19 69.0 1.4 5.9e-19 68.8 1.0 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_5 PF12695.2 gi|557694394|ref|YP_008797448.1| - 1.8e-05 24.5 0.0 2.9e-05 23.8 0.0 1.4 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|557694394|ref|YP_008797448.1| - 0.015 14.8 0.0 0.027 14.0 0.0 1.4 1 0 0 1 1 1 0 alpha/beta hydrolase fold NAD_binding_10 PF13460.1 gi|557694394|ref|YP_008797448.1| - 0.1 12.6 0.1 0.19 11.7 0.1 1.5 1 1 0 1 1 1 0 NADH(P)-binding FadA PF09403.5 gi|557694395|ref|YP_008797449.1| - 0.081 12.9 0.4 0.091 12.7 0.2 1.2 1 0 0 1 1 1 0 Adhesion protein FadA RHH_1 PF01402.16 gi|557694395|ref|YP_008797449.1| - 0.65 9.9 5.3 1.6 8.7 0.3 3.2 2 2 1 3 3 3 0 Ribbon-helix-helix protein, copG family PIN PF01850.16 gi|557694396|ref|YP_008797450.1| - 3.7e-11 43.4 0.7 4.5e-11 43.1 0.5 1.0 1 0 0 1 1 1 1 PIN domain PIN_2 PF10130.4 gi|557694396|ref|YP_008797450.1| - 0.014 15.3 0.1 0.019 15.0 0.0 1.2 1 0 0 1 1 1 0 PIN domain Meth_synt_2 PF01717.13 gi|557694397|ref|YP_008797451.1| - 7.2e-13 48.2 0.0 7.5e-13 48.1 0.0 1.1 1 0 0 1 1 1 1 Cobalamin-independent synthase, Catalytic domain Meth_synt_1 PF08267.7 gi|557694397|ref|YP_008797451.1| - 0.0037 16.5 0.0 0.0053 16.0 0.0 1.2 1 1 0 1 1 1 1 Cobalamin-independent synthase, N-terminal domain OsmC PF02566.14 gi|557694398|ref|YP_008797452.1| - 0.0007 19.7 0.0 0.00072 19.7 0.0 1.1 1 0 0 1 1 1 1 OsmC-like protein HEPN PF05168.9 gi|557694399|ref|YP_008797453.1| - 1.2e-31 109.0 0.1 1.4e-31 108.8 0.1 1.0 1 0 0 1 1 1 1 HEPN domain PaREP1 PF05942.6 gi|557694399|ref|YP_008797453.1| - 0.052 13.4 0.2 0.072 12.9 0.1 1.5 1 1 0 1 1 1 0 Archaeal PaREP1/PaREP8 family NTP_transf_2 PF01909.18 gi|557694400|ref|YP_008797454.1| - 1.5e-10 41.2 0.2 1.9e-10 40.9 0.1 1.2 1 0 0 1 1 1 1 Nucleotidyltransferase domain DUF1884 PF08967.5 gi|557694400|ref|YP_008797454.1| - 0.0017 18.3 0.1 0.27 11.3 0.0 2.2 2 0 0 2 2 2 2 Domain of unknown function (DUF1884) HTH_24 PF13412.1 gi|557694400|ref|YP_008797454.1| - 0.036 13.4 0.1 2.8 7.3 0.0 2.4 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding DUF4269 PF14091.1 gi|557694400|ref|YP_008797454.1| - 0.11 12.4 0.0 0.15 12.0 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4269) DUF294 PF03445.8 gi|557694400|ref|YP_008797454.1| - 0.13 11.8 0.0 0.17 11.5 0.0 1.2 1 0 0 1 1 1 0 Putative nucleotidyltransferase DUF294 Dala_Dala_lig_C PF07478.8 gi|557694401|ref|YP_008797455.1| - 3.2e-25 88.7 0.0 4.8e-25 88.1 0.0 1.3 1 0 0 1 1 1 1 D-ala D-ala ligase C-terminus Methyltransf_18 PF12847.2 gi|557694401|ref|YP_008797455.1| - 3.2e-20 72.7 0.0 1.1e-19 71.0 0.0 1.9 2 0 0 2 2 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|557694401|ref|YP_008797455.1| - 6.4e-20 71.4 0.0 1.2e-19 70.5 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|557694401|ref|YP_008797455.1| - 7.5e-20 71.1 0.0 3.5e-19 69.0 0.0 2.0 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|557694401|ref|YP_008797455.1| - 3.2e-19 69.0 0.0 6.9e-19 67.9 0.0 1.5 2 0 0 2 2 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|557694401|ref|YP_008797455.1| - 2.3e-14 53.0 0.0 4.8e-14 52.0 0.0 1.4 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family ATP-grasp_4 PF13535.1 gi|557694401|ref|YP_008797455.1| - 1.6e-13 50.8 0.0 6e-13 48.9 0.0 2.0 1 1 0 1 1 1 1 ATP-grasp domain Methyltransf_23 PF13489.1 gi|557694401|ref|YP_008797455.1| - 8.1e-11 41.9 0.0 2.6e-10 40.2 0.0 1.8 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|557694401|ref|YP_008797455.1| - 1.5e-10 41.1 0.0 3.6e-10 39.9 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|557694401|ref|YP_008797455.1| - 1.4e-09 38.2 0.0 3.6e-09 36.9 0.0 1.7 2 0 0 2 2 1 1 Methyltransferase domain MTS PF05175.9 gi|557694401|ref|YP_008797455.1| - 2.5e-08 33.4 0.0 4.2e-08 32.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain ATP-grasp_3 PF02655.9 gi|557694401|ref|YP_008797455.1| - 1.7e-06 28.0 0.0 4.3e-06 26.6 0.0 1.7 1 1 0 1 1 1 1 ATP-grasp domain TehB PF03848.9 gi|557694401|ref|YP_008797455.1| - 2.3e-06 26.9 0.0 3.9e-06 26.1 0.0 1.3 1 0 0 1 1 1 1 Tellurite resistance protein TehB ATPgrasp_Ter PF15632.1 gi|557694401|ref|YP_008797455.1| - 3.7e-05 22.6 0.0 0.16 10.7 0.0 2.8 3 1 0 3 3 3 2 ATP-grasp in the biosynthetic pathway with Ter operon UPF0020 PF01170.13 gi|557694401|ref|YP_008797455.1| - 0.00012 21.7 0.0 0.00025 20.6 0.0 1.5 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_9 PF08003.6 gi|557694401|ref|YP_008797455.1| - 0.00054 18.7 0.0 0.00087 18.0 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) RrnaAD PF00398.15 gi|557694401|ref|YP_008797455.1| - 0.00087 18.3 0.0 0.0014 17.6 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase CMAS PF02353.15 gi|557694401|ref|YP_008797455.1| - 0.0017 17.5 0.0 0.0026 16.8 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Cons_hypoth95 PF03602.10 gi|557694401|ref|YP_008797455.1| - 0.0062 15.9 0.1 0.015 14.7 0.0 1.6 2 0 0 2 2 2 1 Conserved hypothetical protein 95 PCMT PF01135.14 gi|557694401|ref|YP_008797455.1| - 0.011 15.3 0.0 0.019 14.5 0.0 1.3 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_15 PF09445.5 gi|557694401|ref|YP_008797455.1| - 0.014 14.9 0.0 0.024 14.1 0.0 1.3 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase Methyltransf_4 PF02390.12 gi|557694401|ref|YP_008797455.1| - 0.034 13.1 0.0 0.063 12.3 0.0 1.4 1 0 0 1 1 1 0 Putative methyltransferase RimK PF08443.6 gi|557694401|ref|YP_008797455.1| - 0.035 13.5 0.0 0.088 12.2 0.0 1.7 2 0 0 2 2 2 0 RimK-like ATP-grasp domain CPSase_L_D2 PF02786.12 gi|557694401|ref|YP_008797455.1| - 0.055 12.7 0.0 0.11 11.7 0.0 1.5 1 0 0 1 1 1 0 Carbamoyl-phosphate synthase L chain, ATP binding domain tRNA_U5-meth_tr PF05958.6 gi|557694401|ref|YP_008797455.1| - 0.079 11.6 0.0 0.13 10.9 0.0 1.2 1 0 0 1 1 1 0 tRNA (Uracil-5-)-methyltransferase Methyltransf_29 PF03141.11 gi|557694401|ref|YP_008797455.1| - 0.082 11.2 0.0 0.12 10.6 0.0 1.1 1 0 0 1 1 1 0 Putative S-adenosyl-L-methionine-dependent methyltransferase GARS_A PF01071.14 gi|557694401|ref|YP_008797455.1| - 0.089 12.3 0.0 0.2 11.2 0.0 1.5 1 0 0 1 1 1 0 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain PrmA PF06325.8 gi|557694401|ref|YP_008797455.1| - 0.14 11.2 0.0 0.24 10.4 0.0 1.3 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) GHMP_kinases_C PF08544.8 gi|557694401|ref|YP_008797455.1| - 0.16 12.1 0.0 0.43 10.8 0.0 1.7 1 0 0 1 1 1 0 GHMP kinases C terminal NTP_transf_2 PF01909.18 gi|557694402|ref|YP_008797456.1| - 4.9e-12 46.0 0.1 6.9e-12 45.5 0.1 1.3 1 0 0 1 1 1 1 Nucleotidyltransferase domain DNA_pol_B_palm PF14792.1 gi|557694402|ref|YP_008797456.1| - 0.034 14.1 0.0 0.041 13.9 0.0 1.2 1 0 0 1 1 1 0 DNA polymerase beta palm HEPN PF05168.9 gi|557694403|ref|YP_008797457.1| - 6.7e-23 80.8 0.0 8.5e-23 80.4 0.0 1.1 1 0 0 1 1 1 1 HEPN domain ATP_bind_4 PF01902.12 gi|557694404|ref|YP_008797458.1| - 3.2e-38 131.3 0.0 3.8e-38 131.0 0.0 1.0 1 0 0 1 1 1 1 ATP-binding region Nitrate_red_del PF02613.10 gi|557694405|ref|YP_008797459.1| - 4.7e-14 52.3 0.2 6.4e-14 51.9 0.1 1.3 1 1 0 1 1 1 1 Nitrate reductase delta subunit EB_dh PF09459.5 gi|557694406|ref|YP_008797460.1| - 2.4e-22 79.6 0.1 5.7e-22 78.4 0.0 1.6 1 1 0 1 1 1 1 Ethylbenzene dehydrogenase Fer4_11 PF13247.1 gi|557694407|ref|YP_008797461.1| - 2.5e-31 107.5 6.4 2.5e-31 107.5 4.4 2.1 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|557694407|ref|YP_008797461.1| - 8.4e-09 35.1 16.2 6.1e-05 22.7 2.6 3.3 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|557694407|ref|YP_008797461.1| - 2e-06 28.0 18.3 0.00074 19.8 3.6 3.3 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|557694407|ref|YP_008797461.1| - 0.00025 20.7 3.8 0.00025 20.7 2.7 4.6 4 1 0 4 4 4 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|557694407|ref|YP_008797461.1| - 0.00078 19.6 20.6 0.032 14.5 0.2 3.8 2 1 1 3 3 3 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|557694407|ref|YP_008797461.1| - 0.0015 18.3 0.8 0.0015 18.3 0.5 3.3 2 1 1 3 3 3 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|557694407|ref|YP_008797461.1| - 0.0046 16.5 2.5 0.0046 16.5 1.7 4.3 4 0 0 4 4 4 1 4Fe-4S binding domain Fer4_6 PF12837.2 gi|557694407|ref|YP_008797461.1| - 0.035 13.9 3.5 0.035 13.9 2.4 4.8 4 1 0 4 4 4 0 4Fe-4S binding domain Fer4_8 PF13183.1 gi|557694407|ref|YP_008797461.1| - 0.038 14.0 0.1 0.038 14.0 0.0 3.1 3 2 0 3 3 3 0 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|557694407|ref|YP_008797461.1| - 0.11 12.8 0.6 0.11 12.8 0.4 3.0 3 0 0 3 3 3 0 4Fe-4S single cluster domain Fer4_17 PF13534.1 gi|557694407|ref|YP_008797461.1| - 0.16 12.3 0.2 0.16 12.3 0.1 3.6 2 1 1 3 3 3 0 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|557694407|ref|YP_008797461.1| - 0.28 11.7 15.4 0.25 11.9 0.8 3.1 3 0 0 3 3 3 0 4Fe-4S single cluster domain Molybdopterin PF00384.17 gi|557694408|ref|YP_008797462.1| - 8e-17 61.0 0.0 1.2e-16 60.4 0.0 1.2 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.16 gi|557694408|ref|YP_008797462.1| - 0.00024 20.8 0.1 0.031 14.0 0.0 2.7 3 0 0 3 3 3 2 Molydopterin dinucleotide binding domain Molybdopterin PF00384.17 gi|557694409|ref|YP_008797463.1| - 1.1e-21 77.1 0.0 1.1e-18 67.1 0.0 2.1 2 0 0 2 2 2 2 Molybdopterin oxidoreductase HTH_10 PF04967.7 gi|557694410|ref|YP_008797464.1| - 4.6e-18 64.5 0.1 7.2e-18 63.9 0.1 1.3 1 0 0 1 1 1 1 HTH DNA binding domain HTH_24 PF13412.1 gi|557694410|ref|YP_008797464.1| - 0.053 12.9 0.0 0.21 10.9 0.0 2.0 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding HTH_AraC PF00165.18 gi|557694410|ref|YP_008797464.1| - 0.07 12.9 0.0 0.15 11.9 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix proteins, AraC family HTH_DeoR PF08220.7 gi|557694410|ref|YP_008797464.1| - 0.11 12.0 0.0 0.26 10.8 0.0 1.7 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain Pyr_redox_2 PF07992.9 gi|557694411|ref|YP_008797465.1| - 3e-41 141.5 0.3 1.1e-39 136.3 0.2 3.1 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.17 gi|557694411|ref|YP_008797465.1| - 2e-20 72.8 0.0 4.5e-20 71.7 0.0 1.6 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox PF00070.22 gi|557694411|ref|YP_008797465.1| - 1.3e-16 60.7 3.1 6.3e-15 55.3 0.2 2.5 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|557694411|ref|YP_008797465.1| - 1.5e-10 41.5 0.0 8.4e-06 25.9 0.0 2.4 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.17 gi|557694411|ref|YP_008797465.1| - 2.5e-08 33.2 0.6 2.3e-06 26.7 0.0 3.4 2 1 2 4 4 4 1 Glucose inhibited division protein A HI0933_like PF03486.9 gi|557694411|ref|YP_008797465.1| - 0.00031 19.3 4.0 0.14 10.5 0.0 2.9 3 1 1 4 4 4 2 HI0933-like protein NAD_binding_9 PF13454.1 gi|557694411|ref|YP_008797465.1| - 0.00039 20.2 0.2 0.21 11.3 0.0 2.9 3 0 0 3 3 3 1 FAD-NAD(P)-binding NAD_binding_8 PF13450.1 gi|557694411|ref|YP_008797465.1| - 0.0031 17.4 0.2 4 7.5 0.1 2.7 2 0 0 2 2 2 2 NAD(P)-binding Rossmann-like domain FAD_oxidored PF12831.2 gi|557694411|ref|YP_008797465.1| - 0.0048 16.0 0.1 0.3 10.1 0.0 2.2 2 0 0 2 2 2 1 FAD dependent oxidoreductase 3HCDH_N PF02737.13 gi|557694411|ref|YP_008797465.1| - 0.025 14.2 0.1 0.063 12.9 0.1 1.7 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Trp_halogenase PF04820.9 gi|557694411|ref|YP_008797465.1| - 0.049 12.2 0.4 0.081 11.5 0.2 1.3 1 0 0 1 1 1 0 Tryptophan halogenase FAD_binding_2 PF00890.19 gi|557694411|ref|YP_008797465.1| - 0.069 11.9 7.9 0.11 11.2 0.8 3.6 3 1 1 5 5 5 0 FAD binding domain NAD_binding_7 PF13241.1 gi|557694411|ref|YP_008797465.1| - 0.11 12.7 0.0 14 6.0 0.0 2.4 2 0 0 2 2 2 0 Putative NAD(P)-binding Lycopene_cycl PF05834.7 gi|557694411|ref|YP_008797465.1| - 0.12 11.2 4.2 1.5 7.6 0.2 2.9 2 1 1 3 3 3 0 Lycopene cyclase protein DAO PF01266.19 gi|557694411|ref|YP_008797465.1| - 0.18 10.6 7.4 1.7 7.4 0.3 2.9 3 1 0 3 3 3 0 FAD dependent oxidoreductase HxlR PF01638.12 gi|557694412|ref|YP_008797466.1| - 1e-22 79.5 0.2 1.6e-22 78.8 0.1 1.3 1 0 0 1 1 1 1 HxlR-like helix-turn-helix HTH_9 PF08221.6 gi|557694412|ref|YP_008797466.1| - 0.0054 16.5 0.0 0.019 14.8 0.0 1.8 3 0 0 3 3 3 1 RNA polymerase III subunit RPC82 helix-turn-helix domain PadR PF03551.9 gi|557694412|ref|YP_008797466.1| - 0.0081 15.9 0.0 0.012 15.3 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family RepL PF05732.6 gi|557694412|ref|YP_008797466.1| - 0.028 13.6 0.0 0.035 13.3 0.0 1.2 1 0 0 1 1 1 0 Firmicute plasmid replication protein (RepL) MarR PF01047.17 gi|557694412|ref|YP_008797466.1| - 0.058 13.1 0.0 0.091 12.4 0.0 1.3 1 0 0 1 1 1 0 MarR family B-block_TFIIIC PF04182.7 gi|557694412|ref|YP_008797466.1| - 0.078 12.8 0.0 0.095 12.5 0.0 1.4 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC NurA PF09376.5 gi|557694413|ref|YP_008797467.1| - 2.9e-16 59.7 0.1 4.5e-16 59.0 0.1 1.3 1 0 0 1 1 1 1 NurA domain DUF4322 PF14210.1 gi|557694413|ref|YP_008797467.1| - 0.34 10.4 1.3 1.2 8.6 0.3 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4322) DUF87 PF01935.12 gi|557694414|ref|YP_008797468.1| - 1.4e-38 133.0 0.0 2.3e-38 132.3 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function DUF87 AAA_10 PF12846.2 gi|557694414|ref|YP_008797468.1| - 4.3e-29 101.9 0.1 8e-29 101.0 0.1 1.4 1 1 0 1 1 1 1 AAA-like domain FtsK_SpoIIIE PF01580.13 gi|557694414|ref|YP_008797468.1| - 8.1e-06 25.4 0.2 0.00018 21.0 0.1 2.6 1 1 0 1 1 1 1 FtsK/SpoIIIE family TrwB_AAD_bind PF10412.4 gi|557694414|ref|YP_008797468.1| - 2e-05 23.4 0.0 0.0023 16.6 0.0 2.3 2 0 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain Zot PF05707.7 gi|557694414|ref|YP_008797468.1| - 4.1e-05 23.1 0.0 0.00046 19.6 0.0 2.2 2 0 0 2 2 2 1 Zonular occludens toxin (Zot) DUF853 PF05872.7 gi|557694414|ref|YP_008797468.1| - 0.00033 19.1 0.1 0.074 11.3 0.0 2.1 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) T4SS-DNA_transf PF02534.9 gi|557694414|ref|YP_008797468.1| - 0.0019 16.8 0.0 0.0026 16.4 0.0 1.2 1 0 0 1 1 1 1 Type IV secretory system Conjugative DNA transfer AAA_22 PF13401.1 gi|557694414|ref|YP_008797468.1| - 0.0026 17.9 0.0 0.25 11.4 0.0 2.7 2 1 0 2 2 2 1 AAA domain TAF8_C PF10406.4 gi|557694414|ref|YP_008797468.1| - 0.017 15.1 0.0 0.05 13.6 0.0 1.8 1 0 0 1 1 1 0 Transcription factor TFIID complex subunit 8 C-term AAA_16 PF13191.1 gi|557694414|ref|YP_008797468.1| - 0.027 14.4 0.1 0.058 13.3 0.0 1.7 1 0 0 1 1 1 0 AAA ATPase domain Helicase_RecD PF05127.9 gi|557694414|ref|YP_008797468.1| - 0.09 12.4 0.0 0.18 11.4 0.0 1.6 1 0 0 1 1 1 0 Helicase ResIII PF04851.10 gi|557694414|ref|YP_008797468.1| - 0.12 12.2 0.0 0.5 10.1 0.0 1.9 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit DEAD PF00270.24 gi|557694414|ref|YP_008797468.1| - 0.12 11.8 0.0 8.9 5.7 0.0 2.4 2 0 0 2 2 2 0 DEAD/DEAH box helicase Metallophos_2 PF12850.2 gi|557694415|ref|YP_008797469.1| - 1e-13 51.4 0.1 1.8e-13 50.5 0.1 1.4 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|557694415|ref|YP_008797469.1| - 5.3e-11 42.3 0.4 4.9e-10 39.1 0.3 2.1 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_3 PF14582.1 gi|557694415|ref|YP_008797469.1| - 5.9e-05 22.3 0.3 0.75 8.8 0.0 3.7 3 1 0 3 3 3 2 Metallophosphoesterase, calcineurin superfamily Homeobox PF00046.24 gi|557694415|ref|YP_008797469.1| - 0.0074 15.8 0.6 0.08 12.5 0.3 2.4 2 0 0 2 2 2 1 Homeobox domain DUF4088 PF13317.1 gi|557694415|ref|YP_008797469.1| - 0.016 14.5 0.0 0.036 13.3 0.0 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF4088) HAD PF12710.2 gi|557694415|ref|YP_008797469.1| - 0.082 13.0 0.0 0.15 12.2 0.0 1.9 1 1 0 1 1 1 0 haloacid dehalogenase-like hydrolase AAA_23 PF13476.1 gi|557694416|ref|YP_008797470.1| - 6e-16 59.3 54.0 9.4e-16 58.7 23.1 4.3 2 2 0 2 2 2 1 AAA domain SMC_N PF02463.14 gi|557694416|ref|YP_008797470.1| - 7.6e-13 48.1 0.0 4e-12 45.8 0.0 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|557694416|ref|YP_008797470.1| - 8.2e-07 28.4 0.0 1.7e-06 27.4 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain SbcCD_C PF13558.1 gi|557694416|ref|YP_008797470.1| - 9.2e-06 25.4 0.0 3.3e-05 23.7 0.0 1.9 1 0 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_15 PF13175.1 gi|557694416|ref|YP_008797470.1| - 0.00098 18.2 11.7 0.00098 18.2 8.1 1.8 2 0 0 2 2 2 1 AAA ATPase domain IncA PF04156.9 gi|557694416|ref|YP_008797470.1| - 0.0024 17.5 20.8 0.0024 17.5 14.5 4.8 2 2 2 4 4 2 2 IncA protein WEMBL PF05701.6 gi|557694416|ref|YP_008797470.1| - 0.0026 16.3 15.2 0.0026 16.3 10.5 3.0 2 2 0 2 2 1 1 Weak chloroplast movement under blue light DUF1290 PF06947.7 gi|557694416|ref|YP_008797470.1| - 0.013 15.3 2.2 0.042 13.7 1.5 1.8 1 0 0 1 1 1 0 Protein of unknown function (DUF1290) CENP-F_leu_zip PF10473.4 gi|557694416|ref|YP_008797470.1| - 0.014 15.2 2.5 0.014 15.2 1.8 5.5 4 2 1 5 5 5 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Peptidase_S46 PF10459.4 gi|557694416|ref|YP_008797470.1| - 1.1 7.5 23.1 0.28 9.5 8.5 2.7 2 1 0 2 2 2 0 Peptidase S46 FlaC_arch PF05377.6 gi|557694416|ref|YP_008797470.1| - 3.4 7.6 26.4 4.6 7.2 0.6 7.6 6 2 2 8 8 8 0 Flagella accessory protein C (FlaC) T2SG PF08334.6 gi|557694416|ref|YP_008797470.1| - 5.2 6.8 6.4 2.8 7.7 0.1 3.5 4 0 0 4 4 4 0 Type II secretion system (T2SS), protein G Peptidase_C65 PF10275.4 gi|557694416|ref|YP_008797470.1| - 9.7 5.4 16.3 0.25 10.6 2.8 3.5 2 2 3 5 5 5 0 Peptidase C65 Otubain HD PF01966.17 gi|557694417|ref|YP_008797471.1| - 2e-06 27.8 2.0 2.8e-06 27.3 1.4 1.5 1 1 0 1 1 1 1 HD domain Helicase_C PF00271.26 gi|557694418|ref|YP_008797472.1| - 9.8e-11 41.3 0.0 2.2e-10 40.2 0.0 1.6 1 0 0 1 1 1 1 Helicase conserved C-terminal domain DEAD PF00270.24 gi|557694418|ref|YP_008797472.1| - 2.9e-07 30.1 0.2 0.0002 20.9 0.0 3.6 3 1 0 3 3 3 1 DEAD/DEAH box helicase Mpp10 PF04006.7 gi|557694418|ref|YP_008797472.1| - 0.041 12.2 0.1 0.062 11.6 0.1 1.1 1 0 0 1 1 1 0 Mpp10 protein Sulfotransfer_1 PF00685.22 gi|557694420|ref|YP_008797474.1| - 0.048 12.9 0.0 0.05 12.8 0.0 1.1 1 0 0 1 1 1 0 Sulfotransferase domain Cas_Cas5d PF09704.5 gi|557694421|ref|YP_008797475.1| - 1.8e-06 27.7 0.0 2.7e-06 27.1 0.0 1.3 1 1 0 1 1 1 1 CRISPR-associated protein (Cas_Cas5) DUF3764 PF12594.3 gi|557694421|ref|YP_008797475.1| - 0.0006 19.5 0.2 0.0047 16.6 0.0 2.1 2 0 0 2 2 2 1 Protein of unknown function (DUF3764) DevR PF01905.11 gi|557694422|ref|YP_008797476.1| - 3.5e-66 222.8 0.0 5.1e-66 222.2 0.0 1.2 1 0 0 1 1 1 1 CRISPR-associated negative auto-regulator DevR/Csa2 Cas_Csa5 PF09702.5 gi|557694423|ref|YP_008797477.1| - 5.5e-10 39.2 1.1 7.9e-05 22.6 0.1 2.2 1 1 1 2 2 2 2 CRISPR-associated protein (Cas_Csa5) L-fibroin PF05849.6 gi|557694423|ref|YP_008797477.1| - 0.0052 16.1 0.2 0.0064 15.8 0.1 1.1 1 0 0 1 1 1 1 Fibroin light chain (L-fibroin) Herpes_UL36 PF03586.8 gi|557694423|ref|YP_008797477.1| - 0.053 12.6 2.0 0.48 9.4 0.3 2.0 1 1 1 2 2 2 0 Herpesvirus UL36 tegument protein DUF3401 PF11881.3 gi|557694423|ref|YP_008797477.1| - 0.13 11.6 0.1 0.15 11.3 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3401) HTH_20 PF12840.2 gi|557694424|ref|YP_008797478.1| - 0.0011 18.7 0.1 0.002 17.8 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.5 gi|557694424|ref|YP_008797478.1| - 0.0031 17.0 0.2 0.0082 15.7 0.1 1.8 1 0 0 1 1 1 1 IclR helix-turn-helix domain DUF1887 PF09002.6 gi|557694424|ref|YP_008797478.1| - 0.0078 14.6 0.0 0.01 14.3 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1887) Cas_NE0113 PF09623.5 gi|557694424|ref|YP_008797478.1| - 0.032 13.6 0.0 0.042 13.3 0.0 1.2 1 0 0 1 1 1 0 CRISPR-associated protein NE0113 (Cas_NE0113) Cas_APE2256 PF09651.5 gi|557694424|ref|YP_008797478.1| - 0.045 13.4 0.1 0.083 12.6 0.1 1.6 1 1 0 1 1 1 0 CRISPR-associated protein (Cas_APE2256) HTH_24 PF13412.1 gi|557694424|ref|YP_008797478.1| - 0.053 12.9 0.1 0.15 11.4 0.0 1.8 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding HTH_27 PF13463.1 gi|557694424|ref|YP_008797478.1| - 0.069 13.4 0.2 0.2 11.9 0.1 1.9 1 0 0 1 1 1 0 Winged helix DNA-binding domain TrmB PF01978.14 gi|557694424|ref|YP_008797478.1| - 0.36 10.5 2.1 0.57 9.9 0.1 2.3 3 0 0 3 3 3 0 Sugar-specific transcriptional regulator TrmB DUF2276 PF10040.4 gi|557694425|ref|YP_008797479.1| - 1.4e-16 60.7 0.5 5.1e-16 58.9 0.3 1.9 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2276) Uroplakin_II PF07353.7 gi|557694425|ref|YP_008797479.1| - 0.14 11.4 0.0 0.24 10.7 0.0 1.2 1 0 0 1 1 1 0 Uroplakin II Cas_Cas1 PF01867.11 gi|557694426|ref|YP_008797480.1| - 9.6e-59 198.7 0.0 1.2e-58 198.4 0.0 1.1 1 0 0 1 1 1 1 CRISPR associated protein Cas1 CRISPR_Cas2 PF09827.4 gi|557694427|ref|YP_008797481.1| - 1.2e-14 54.1 0.0 1.3e-14 54.0 0.0 1.1 1 0 0 1 1 1 1 CRISPR associated protein Cas2 Cas_Cas4 PF01930.12 gi|557694428|ref|YP_008797482.1| - 2.7e-16 59.9 0.0 3.4e-16 59.5 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function DUF83 PDDEXK_1 PF12705.2 gi|557694428|ref|YP_008797482.1| - 3e-10 39.9 0.0 3.5e-10 39.7 0.0 1.1 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily RAMPs PF03787.10 gi|557694429|ref|YP_008797483.1| - 5.9e-12 45.8 0.0 1.2e-11 44.9 0.0 1.5 1 1 0 1 1 1 1 RAMP superfamily MaoC_dehydratas PF01575.14 gi|557694429|ref|YP_008797483.1| - 0.12 11.7 0.0 0.23 10.8 0.0 1.4 1 0 0 1 1 1 0 MaoC like domain RAMPs PF03787.10 gi|557694430|ref|YP_008797484.1| - 0.00024 21.0 0.0 0.0032 17.3 0.0 2.1 1 1 0 1 1 1 1 RAMP superfamily RAMPs PF03787.10 gi|557694431|ref|YP_008797485.1| - 1.5e-08 34.7 0.0 2.2e-08 34.2 0.0 1.4 1 1 0 1 1 1 1 RAMP superfamily HD PF01966.17 gi|557694432|ref|YP_008797486.1| - 3.3e-09 36.7 0.3 7.1e-09 35.7 0.2 1.5 1 0 0 1 1 1 1 HD domain DUF3692 PF12469.3 gi|557694432|ref|YP_008797486.1| - 0.00042 20.5 2.0 0.00087 19.5 0.0 2.7 3 0 0 3 3 3 1 CRISPR-associated protein RAMPs PF03787.10 gi|557694433|ref|YP_008797487.1| - 1.9e-08 34.4 0.0 3.2e-08 33.6 0.0 1.5 1 1 0 1 1 1 1 RAMP superfamily RAMPs PF03787.10 gi|557694434|ref|YP_008797488.1| - 1.8e-24 86.8 0.0 3.2e-24 85.9 0.0 1.3 1 0 0 1 1 1 1 RAMP superfamily Cas_Cmr3 PF09700.5 gi|557694434|ref|YP_008797488.1| - 0.0074 15.7 0.0 0.0098 15.3 0.0 1.2 1 0 0 1 1 1 1 CRISPR-associated protein (Cas_Cmr3) RAMPs PF03787.10 gi|557694435|ref|YP_008797489.1| - 1.7e-23 83.6 0.0 3.2e-23 82.7 0.0 1.5 1 1 0 1 1 1 1 RAMP superfamily Cas_DxTHG PF09455.5 gi|557694437|ref|YP_008797491.1| - 9.2e-14 51.3 0.0 1.9e-13 50.3 0.0 1.5 2 0 0 2 2 2 1 CRISPR-associated (Cas) DxTHG family Sua5_yciO_yrdC PF01300.13 gi|557694438|ref|YP_008797492.1| - 0.00091 18.5 0.0 0.0011 18.2 0.0 1.1 1 0 0 1 1 1 1 Telomere recombination TMP-TENI PF02581.12 gi|557694439|ref|YP_008797493.1| - 1.2e-46 158.0 0.1 1.4e-46 157.8 0.0 1.0 1 0 0 1 1 1 1 Thiamine monophosphate synthase/TENI His_biosynth PF00977.16 gi|557694439|ref|YP_008797493.1| - 0.00087 18.6 0.1 0.0011 18.2 0.1 1.3 1 0 0 1 1 1 1 Histidine biosynthesis protein NanE PF04131.9 gi|557694439|ref|YP_008797493.1| - 0.00094 18.1 0.1 0.0018 17.2 0.0 1.5 1 1 0 1 1 1 1 Putative N-acetylmannosamine-6-phosphate epimerase NMO PF03060.10 gi|557694439|ref|YP_008797493.1| - 0.0021 17.2 0.8 0.0034 16.5 0.3 1.4 1 1 0 1 1 1 1 Nitronate monooxygenase DUF561 PF04481.7 gi|557694439|ref|YP_008797493.1| - 0.0035 16.3 0.1 0.0092 14.9 0.1 1.7 2 0 0 2 2 2 1 Protein of unknown function (DUF561) ThiG PF05690.9 gi|557694439|ref|YP_008797493.1| - 0.011 14.8 0.4 0.019 14.0 0.3 1.4 1 0 0 1 1 1 0 Thiazole biosynthesis protein ThiG DHO_dh PF01180.16 gi|557694439|ref|YP_008797493.1| - 0.016 14.1 0.1 0.022 13.7 0.1 1.3 1 0 0 1 1 1 0 Dihydroorotate dehydrogenase FMN_dh PF01070.13 gi|557694439|ref|YP_008797493.1| - 0.032 13.0 1.2 0.065 12.0 0.8 1.5 1 1 0 1 1 1 0 FMN-dependent dehydrogenase Dus PF01207.12 gi|557694439|ref|YP_008797493.1| - 0.034 12.9 0.1 0.084 11.6 0.0 1.6 2 0 0 2 2 2 0 Dihydrouridine synthase (Dus) QRPTase_C PF01729.14 gi|557694439|ref|YP_008797493.1| - 0.095 12.2 0.0 0.14 11.7 0.0 1.2 1 0 0 1 1 1 0 Quinolinate phosphoribosyl transferase, C-terminal domain ThiG PF05690.9 gi|557694440|ref|YP_008797494.1| - 6e-101 336.6 0.6 6.7e-101 336.5 0.4 1.0 1 0 0 1 1 1 1 Thiazole biosynthesis protein ThiG His_biosynth PF00977.16 gi|557694440|ref|YP_008797494.1| - 0.00078 18.7 0.1 0.0014 17.9 0.1 1.3 1 0 0 1 1 1 1 Histidine biosynthesis protein FMN_dh PF01070.13 gi|557694440|ref|YP_008797494.1| - 0.0016 17.3 0.6 0.0027 16.5 0.4 1.3 1 0 0 1 1 1 1 FMN-dependent dehydrogenase DUF561 PF04481.7 gi|557694440|ref|YP_008797494.1| - 0.012 14.5 0.5 0.022 13.7 0.3 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF561) Dus PF01207.12 gi|557694440|ref|YP_008797494.1| - 0.025 13.4 0.5 0.058 12.2 0.4 1.6 1 0 0 1 1 1 0 Dihydrouridine synthase (Dus) IMPDH PF00478.20 gi|557694440|ref|YP_008797494.1| - 0.029 13.2 1.2 0.043 12.7 0.8 1.2 1 0 0 1 1 1 0 IMP dehydrogenase / GMP reductase domain Hydrolase_like PF13242.1 gi|557694440|ref|YP_008797494.1| - 0.043 13.5 0.1 0.11 12.1 0.1 1.7 1 0 0 1 1 1 0 HAD-hyrolase-like NanE PF04131.9 gi|557694440|ref|YP_008797494.1| - 0.081 11.8 1.1 1.1 8.1 0.2 2.1 1 1 1 2 2 2 0 Putative N-acetylmannosamine-6-phosphate epimerase ThiS PF02597.15 gi|557694441|ref|YP_008797495.1| - 4.9e-14 52.5 0.3 5.8e-14 52.2 0.2 1.1 1 0 0 1 1 1 1 ThiS family Lambda_tail_I PF06805.7 gi|557694441|ref|YP_008797495.1| - 1.4e-09 37.6 1.1 1.6e-09 37.4 0.8 1.0 1 0 0 1 1 1 1 Bacteriophage lambda tail assembly protein I DUF2635 PF10948.3 gi|557694441|ref|YP_008797495.1| - 0.0032 16.7 0.1 0.0051 16.0 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF2635) GTP_EFTU_D4 PF14578.1 gi|557694441|ref|YP_008797495.1| - 0.012 15.2 1.1 0.12 12.0 0.7 1.9 1 1 0 1 1 1 0 Elongation factor Tu domain 4 TGS PF02824.16 gi|557694441|ref|YP_008797495.1| - 0.038 13.8 0.2 0.068 13.0 0.1 1.6 1 1 0 1 1 1 0 TGS domain Thioredoxin_5 PF13743.1 gi|557694442|ref|YP_008797496.1| - 7.9e-33 113.4 0.0 1.2e-32 112.9 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin DSBA PF01323.15 gi|557694442|ref|YP_008797496.1| - 2.7e-15 56.4 0.7 3e-14 53.0 0.1 2.5 2 1 0 2 2 2 1 DSBA-like thioredoxin domain Thioredoxin_4 PF13462.1 gi|557694442|ref|YP_008797496.1| - 7e-06 26.1 0.0 0.0014 18.6 0.0 2.3 1 1 0 1 1 1 1 Thioredoxin TrmB PF01978.14 gi|557694442|ref|YP_008797496.1| - 0.0023 17.5 0.0 0.0061 16.2 0.0 1.7 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Penicillinase_R PF03965.11 gi|557694442|ref|YP_008797496.1| - 0.0089 16.1 0.1 0.022 14.8 0.0 1.6 1 0 0 1 1 1 1 Penicillinase repressor Thioredoxin PF00085.15 gi|557694442|ref|YP_008797496.1| - 0.022 14.4 0.0 1.4 8.6 0.1 2.4 2 0 0 2 2 2 0 Thioredoxin ANT PF03374.9 gi|557694442|ref|YP_008797496.1| - 0.048 13.6 0.0 0.11 12.5 0.0 1.6 1 0 0 1 1 1 0 Phage antirepressor protein KilAC domain Thioredoxin_2 PF13098.1 gi|557694442|ref|YP_008797496.1| - 0.13 12.4 0.1 2 8.6 0.1 2.3 1 1 0 1 1 1 0 Thioredoxin-like domain DSBA PF01323.15 gi|557694443|ref|YP_008797497.1| - 9.9e-22 77.4 0.4 3.2e-21 75.7 0.3 1.7 1 1 0 1 1 1 1 DSBA-like thioredoxin domain Thioredoxin_5 PF13743.1 gi|557694443|ref|YP_008797497.1| - 4.3e-17 62.2 0.0 2e-16 60.0 0.0 1.8 1 1 0 1 1 1 1 Thioredoxin Thioredoxin_4 PF13462.1 gi|557694443|ref|YP_008797497.1| - 1e-07 32.1 0.1 2.5e-05 24.3 0.0 2.2 1 1 0 2 2 2 2 Thioredoxin Thioredoxin_3 PF13192.1 gi|557694443|ref|YP_008797497.1| - 0.00062 19.5 0.1 0.0016 18.1 0.0 1.8 2 0 0 2 2 2 1 Thioredoxin domain DUF1525 PF07511.6 gi|557694443|ref|YP_008797497.1| - 0.024 14.6 0.1 0.044 13.7 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1525) HypA PF01155.14 gi|557694445|ref|YP_008797499.1| - 9.5e-19 67.1 0.2 1.1e-18 66.9 0.2 1.0 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family TF_Zn_Ribbon PF08271.7 gi|557694445|ref|YP_008797499.1| - 0.00075 18.7 1.2 0.041 13.1 0.2 2.3 2 0 0 2 2 2 1 TFIIB zinc-binding Lar_restr_allev PF14354.1 gi|557694445|ref|YP_008797499.1| - 0.00086 19.5 0.0 1.5 9.2 0.0 2.3 2 0 0 2 2 2 2 Restriction alleviation protein Lar Herpes_UL49_1 PF03117.9 gi|557694445|ref|YP_008797499.1| - 0.1 11.6 0.2 0.65 9.0 0.1 2.0 1 1 0 1 1 1 0 UL49 family Nudix_N_2 PF14803.1 gi|557694445|ref|YP_008797499.1| - 0.11 12.2 2.2 0.31 10.7 0.1 2.2 2 0 0 2 2 2 0 Nudix N-terminal zf-CCHC_4 PF14392.1 gi|557694445|ref|YP_008797499.1| - 0.19 11.4 1.6 0.68 9.6 0.0 2.3 2 1 0 2 2 2 0 Zinc knuckle ParA PF10609.4 gi|557694446|ref|YP_008797500.1| - 6.7e-20 70.7 0.0 1.1e-19 70.0 0.0 1.4 1 0 0 1 1 1 1 ParA/MinD ATPase like CbiA PF01656.18 gi|557694446|ref|YP_008797500.1| - 5.3e-18 65.1 0.0 8e-18 64.5 0.0 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|557694446|ref|YP_008797500.1| - 6.1e-09 36.0 0.0 1.2e-06 28.5 0.0 2.3 2 0 0 2 2 2 1 AAA domain ArsA_ATPase PF02374.10 gi|557694446|ref|YP_008797500.1| - 8.7e-07 28.2 1.1 1.8e-05 23.9 0.3 2.2 2 0 0 2 2 2 1 Anion-transporting ATPase MipZ PF09140.6 gi|557694446|ref|YP_008797500.1| - 1.3e-05 24.4 0.1 4.9e-05 22.5 0.0 1.8 1 1 0 1 1 1 1 ATPase MipZ AAA_26 PF13500.1 gi|557694446|ref|YP_008797500.1| - 0.0021 17.7 1.4 0.039 13.5 0.0 2.2 2 0 0 2 2 2 1 AAA domain YopE_N PF09020.5 gi|557694446|ref|YP_008797500.1| - 0.022 14.7 0.0 0.041 13.9 0.0 1.4 1 0 0 1 1 1 0 YopE, N terminal AAA_25 PF13481.1 gi|557694446|ref|YP_008797500.1| - 0.049 13.0 0.0 0.08 12.3 0.0 1.4 1 0 0 1 1 1 0 AAA domain Fer4_NifH PF00142.13 gi|557694446|ref|YP_008797500.1| - 0.067 12.3 0.0 1.8 7.6 0.0 2.1 2 0 0 2 2 2 0 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family Fer4_18 PF13746.1 gi|557694447|ref|YP_008797501.1| - 9.1e-17 61.2 8.8 2.5e-16 59.8 1.3 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|557694447|ref|YP_008797501.1| - 1.7e-08 34.3 18.1 1.9e-07 31.0 7.7 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|557694447|ref|YP_008797501.1| - 7.1e-08 32.7 8.0 0.0021 18.3 0.1 2.8 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|557694447|ref|YP_008797501.1| - 1.4e-07 31.7 7.4 0.0016 18.7 0.1 2.6 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|557694447|ref|YP_008797501.1| - 5.7e-07 29.7 10.7 2.4e-06 27.6 6.6 2.4 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|557694447|ref|YP_008797501.1| - 3e-06 26.8 13.1 0.0027 17.5 2.4 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|557694447|ref|YP_008797501.1| - 2.9e-05 23.7 14.2 0.012 15.3 0.6 2.6 3 0 0 3 3 2 2 4Fe-4S dicluster domain Fer4 PF00037.22 gi|557694447|ref|YP_008797501.1| - 0.00048 19.6 18.8 0.0068 15.9 2.6 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|557694447|ref|YP_008797501.1| - 0.00065 19.5 13.3 0.036 13.9 0.5 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|557694447|ref|YP_008797501.1| - 0.0049 17.1 16.3 0.5 10.8 6.3 2.8 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_3 PF12798.2 gi|557694447|ref|YP_008797501.1| - 0.01 16.3 5.6 0.01 16.3 3.9 2.7 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_16 PF13484.1 gi|557694447|ref|YP_008797501.1| - 0.027 15.1 13.4 0.59 10.9 8.8 2.5 1 1 2 3 3 3 0 4Fe-4S double cluster binding domain Sigma70_r3 PF04539.11 gi|557694447|ref|YP_008797501.1| - 0.032 14.1 1.3 0.096 12.5 0.3 1.9 2 0 0 2 2 2 0 Sigma-70 region 3 Fer4_15 PF13459.1 gi|557694447|ref|YP_008797501.1| - 0.066 13.7 10.3 0.86 10.2 0.3 2.8 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_13 PF13370.1 gi|557694447|ref|YP_008797501.1| - 0.092 13.1 11.9 1.6 9.1 3.6 2.7 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_6 PF12837.2 gi|557694447|ref|YP_008797501.1| - 0.094 12.6 20.9 0.52 10.2 2.4 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_20 PF14691.1 gi|557694447|ref|YP_008797501.1| - 0.91 9.1 9.2 1.5 8.4 0.1 2.5 2 0 0 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster cNMP_binding PF00027.24 gi|557694448|ref|YP_008797502.1| - 4e-14 52.1 0.0 7.4e-14 51.3 0.0 1.4 2 0 0 2 2 2 1 Cyclic nucleotide-binding domain NAD_binding_1 PF00175.16 gi|557694449|ref|YP_008797503.1| - 3.7e-21 75.7 0.0 5.4e-21 75.2 0.0 1.3 1 0 0 1 1 1 1 Oxidoreductase NAD-binding domain DHODB_Fe-S_bind PF10418.4 gi|557694449|ref|YP_008797503.1| - 9.2e-15 53.8 2.5 1.7e-14 52.9 1.7 1.5 1 0 0 1 1 1 1 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B FAD_binding_6 PF00970.19 gi|557694449|ref|YP_008797503.1| - 3.4e-06 27.1 0.0 6.3e-06 26.2 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase FAD-binding domain NAD_binding_6 PF08030.7 gi|557694449|ref|YP_008797503.1| - 0.0031 17.4 0.4 0.0083 16.0 0.0 1.9 3 0 0 3 3 3 1 Ferric reductase NAD binding domain Oxidored_q6 PF01058.17 gi|557694450|ref|YP_008797504.1| - 2.3e-24 85.4 0.0 3.3e-24 84.9 0.0 1.2 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit NiFeSe_Hases PF00374.14 gi|557694451|ref|YP_008797505.1| - 5.9e-28 97.9 0.1 1.5e-15 56.9 0.0 3.2 2 1 1 3 3 3 3 Nickel-dependent hydrogenase DUF3236 PF11576.3 gi|557694451|ref|YP_008797505.1| - 0.11 11.8 0.0 0.41 10.0 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF3236) HycI PF01750.13 gi|557694452|ref|YP_008797506.1| - 2.6e-12 46.4 0.1 3.2e-12 46.1 0.1 1.1 1 0 0 1 1 1 1 Hydrogenase maturation protease Sua5_yciO_yrdC PF01300.13 gi|557694453|ref|YP_008797507.1| - 7.8e-46 155.5 0.0 1.2e-45 154.9 0.0 1.3 1 0 0 1 1 1 1 Telomere recombination zf-HYPF PF07503.7 gi|557694453|ref|YP_008797507.1| - 4.1e-25 86.8 9.9 9.6e-17 60.1 0.9 2.5 2 0 0 2 2 2 2 HypF finger Acylphosphatase PF00708.13 gi|557694453|ref|YP_008797507.1| - 5.5e-24 84.0 0.1 1e-23 83.2 0.0 1.5 1 0 0 1 1 1 1 Acylphosphatase zf-RING_4 PF14570.1 gi|557694453|ref|YP_008797507.1| - 0.86 9.2 7.0 3.5 7.2 0.6 2.5 2 0 0 2 2 2 0 RING/Ubox like zinc-binding domain HypD PF01924.11 gi|557694454|ref|YP_008797508.1| - 2.8e-123 411.1 0.0 3.3e-123 410.9 0.0 1.0 1 0 0 1 1 1 1 Hydrogenase formation hypA family zf-RING_6 PF14835.1 gi|557694454|ref|YP_008797508.1| - 0.065 13.0 0.0 0.15 11.8 0.0 1.6 1 0 0 1 1 1 0 zf-RING of BARD1-type protein MTHFR_C PF12225.3 gi|557694454|ref|YP_008797508.1| - 0.53 9.8 2.5 0.96 8.9 1.7 1.3 1 0 0 1 1 1 0 Methylene-tetrahydrofolate reductase C terminal HupF_HypC PF01455.13 gi|557694455|ref|YP_008797509.1| - 3.3e-16 59.0 0.4 4.6e-16 58.5 0.3 1.2 1 0 0 1 1 1 1 HupF/HypC family FhuF PF06276.7 gi|557694455|ref|YP_008797509.1| - 0.028 14.4 0.0 0.085 12.8 0.0 1.8 1 1 0 1 1 1 0 Ferric iron reductase FhuF-like transporter DUF2433 PF10360.4 gi|557694455|ref|YP_008797509.1| - 0.14 12.5 0.1 0.38 11.0 0.1 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF2433) YajC PF02699.10 gi|557694455|ref|YP_008797509.1| - 0.14 11.8 1.3 3.7 7.2 0.1 2.1 1 1 1 2 2 2 0 Preprotein translocase subunit AIRS_C PF02769.17 gi|557694456|ref|YP_008797510.1| - 7.6e-21 74.7 0.1 1.1e-20 74.1 0.0 1.2 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.19 gi|557694456|ref|YP_008797510.1| - 8e-13 48.4 0.3 2.3e-12 46.9 0.2 1.8 2 0 0 2 2 2 1 AIR synthase related protein, N-terminal domain IU_nuc_hydro PF01156.14 gi|557694458|ref|YP_008797512.1| - 1.9e-92 309.8 0.0 2.1e-92 309.6 0.0 1.0 1 0 0 1 1 1 1 Inosine-uridine preferring nucleoside hydrolase CbiQ PF02361.11 gi|557694460|ref|YP_008797514.1| - 5.6e-25 88.2 16.7 7.6e-25 87.7 11.6 1.2 1 0 0 1 1 1 1 Cobalt transport protein ABC_tran PF00005.22 gi|557694461|ref|YP_008797515.1| - 7e-30 104.1 0.0 1.1e-29 103.4 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|557694461|ref|YP_008797515.1| - 7.1e-13 49.1 0.1 3.1e-05 24.0 0.1 2.2 2 0 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|557694461|ref|YP_008797515.1| - 2e-07 30.4 0.0 9.5e-06 24.9 0.0 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|557694461|ref|YP_008797515.1| - 0.00016 21.0 0.0 0.00032 20.1 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_17 PF13207.1 gi|557694461|ref|YP_008797515.1| - 0.00047 20.9 0.2 0.0012 19.6 0.2 1.6 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.1 gi|557694461|ref|YP_008797515.1| - 0.00098 19.4 0.0 0.0015 18.8 0.0 1.3 1 0 0 1 1 1 1 AAA domain ArgK PF03308.11 gi|557694461|ref|YP_008797515.1| - 0.0011 17.8 0.0 0.0023 16.7 0.0 1.6 1 0 0 1 1 1 1 ArgK protein AAA_10 PF12846.2 gi|557694461|ref|YP_008797515.1| - 0.0013 18.2 0.1 0.39 10.1 0.0 2.2 2 0 0 2 2 2 1 AAA-like domain AAA_16 PF13191.1 gi|557694461|ref|YP_008797515.1| - 0.0029 17.6 0.0 0.0044 17.0 0.0 1.3 1 0 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|557694461|ref|YP_008797515.1| - 0.0033 17.5 0.3 0.03 14.4 0.2 2.3 1 1 0 1 1 1 1 AAA domain Mg_chelatase PF01078.16 gi|557694461|ref|YP_008797515.1| - 0.0038 16.4 0.1 0.071 12.2 0.0 2.1 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI IstB_IS21 PF01695.12 gi|557694461|ref|YP_008797515.1| - 0.0058 16.0 0.3 0.84 9.0 0.1 2.2 2 0 0 2 2 2 1 IstB-like ATP binding protein AAA_18 PF13238.1 gi|557694461|ref|YP_008797515.1| - 0.017 15.4 0.1 0.032 14.5 0.1 1.5 1 0 0 1 1 1 0 AAA domain SbcCD_C PF13558.1 gi|557694461|ref|YP_008797515.1| - 0.017 15.0 0.0 0.15 12.0 0.0 2.1 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit MobB PF03205.9 gi|557694461|ref|YP_008797515.1| - 0.019 14.6 0.1 0.055 13.1 0.1 1.9 1 1 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA PF00004.24 gi|557694461|ref|YP_008797515.1| - 0.03 14.5 0.1 0.14 12.3 0.0 2.0 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) DUF258 PF03193.11 gi|557694461|ref|YP_008797515.1| - 0.037 13.2 0.0 0.063 12.4 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_14 PF13173.1 gi|557694461|ref|YP_008797515.1| - 0.042 13.7 0.1 1.8 8.4 0.0 2.5 2 1 0 2 2 2 0 AAA domain MutS_V PF00488.16 gi|557694461|ref|YP_008797515.1| - 0.044 13.1 0.0 0.11 11.8 0.0 1.6 2 0 0 2 2 2 0 MutS domain V AAA_30 PF13604.1 gi|557694461|ref|YP_008797515.1| - 0.047 13.2 0.3 0.27 10.7 0.1 2.0 2 0 0 2 2 2 0 AAA domain AAA_15 PF13175.1 gi|557694461|ref|YP_008797515.1| - 0.069 12.1 0.0 2.6 6.9 0.0 2.1 2 0 0 2 2 2 0 AAA ATPase domain ATP_bind_1 PF03029.12 gi|557694461|ref|YP_008797515.1| - 0.072 12.6 0.1 0.18 11.2 0.0 1.7 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein AAA_25 PF13481.1 gi|557694461|ref|YP_008797515.1| - 0.072 12.4 0.0 0.16 11.3 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_13 PF13166.1 gi|557694461|ref|YP_008797515.1| - 0.097 11.1 0.1 0.23 9.8 0.0 1.5 2 0 0 2 2 2 0 AAA domain AAA_28 PF13521.1 gi|557694461|ref|YP_008797515.1| - 0.12 12.2 0.1 0.23 11.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.18 gi|557694461|ref|YP_008797515.1| - 0.13 12.2 0.1 0.25 11.2 0.1 1.6 1 0 0 1 1 1 0 50S ribosome-binding GTPase DUF3584 PF12128.3 gi|557694461|ref|YP_008797515.1| - 0.14 9.4 0.2 0.23 8.7 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) ABC_ATPase PF09818.4 gi|557694461|ref|YP_008797515.1| - 0.14 10.7 0.4 0.32 9.5 0.2 1.6 2 0 0 2 2 2 0 Predicted ATPase of the ABC class AAA_33 PF13671.1 gi|557694461|ref|YP_008797515.1| - 0.14 11.9 0.3 0.44 10.4 0.1 1.8 2 0 0 2 2 2 0 AAA domain ABC_tran PF00005.22 gi|557694462|ref|YP_008797516.1| - 5.1e-28 98.0 0.0 9.4e-28 97.2 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|557694462|ref|YP_008797516.1| - 4.1e-10 40.1 0.0 7.1e-06 26.1 0.0 2.1 2 0 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|557694462|ref|YP_008797516.1| - 3.6e-07 29.6 0.0 5.8e-07 28.9 0.0 1.3 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.1 gi|557694462|ref|YP_008797516.1| - 1.4e-05 24.3 0.0 0.1 11.6 0.0 2.0 2 0 0 2 2 2 2 AAA ATPase domain AAA_13 PF13166.1 gi|557694462|ref|YP_008797516.1| - 6.6e-05 21.5 0.1 0.078 11.4 0.0 2.1 2 0 0 2 2 2 2 AAA domain KaiC PF06745.8 gi|557694462|ref|YP_008797516.1| - 0.0062 15.6 0.9 1.3 8.0 0.1 2.2 2 0 0 2 2 2 1 KaiC NACHT PF05729.7 gi|557694462|ref|YP_008797516.1| - 0.011 15.3 0.3 0.019 14.6 0.2 1.4 1 0 0 1 1 1 0 NACHT domain Mg_chelatase PF01078.16 gi|557694462|ref|YP_008797516.1| - 0.012 14.7 0.0 0.021 14.0 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI Zeta_toxin PF06414.7 gi|557694462|ref|YP_008797516.1| - 0.013 14.5 0.1 0.058 12.4 0.0 2.0 2 1 0 2 2 2 0 Zeta toxin AAA_29 PF13555.1 gi|557694462|ref|YP_008797516.1| - 0.015 14.8 0.2 0.029 13.9 0.2 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_25 PF13481.1 gi|557694462|ref|YP_008797516.1| - 0.016 14.6 0.2 0.64 9.3 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_22 PF13401.1 gi|557694462|ref|YP_008797516.1| - 0.018 15.2 0.0 0.057 13.5 0.0 1.9 2 0 0 2 2 2 0 AAA domain DUF258 PF03193.11 gi|557694462|ref|YP_008797516.1| - 0.024 13.8 0.1 0.066 12.3 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function, DUF258 AAA_16 PF13191.1 gi|557694462|ref|YP_008797516.1| - 0.031 14.2 0.2 0.097 12.6 0.1 2.1 1 1 0 1 1 1 0 AAA ATPase domain AAA_18 PF13238.1 gi|557694462|ref|YP_008797516.1| - 0.036 14.3 0.0 0.22 11.8 0.0 2.2 2 0 0 2 2 2 0 AAA domain SRP54 PF00448.17 gi|557694462|ref|YP_008797516.1| - 0.042 13.3 1.2 0.38 10.1 0.1 2.2 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain AAA_17 PF13207.1 gi|557694462|ref|YP_008797516.1| - 0.046 14.5 0.0 0.099 13.4 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_24 PF13479.1 gi|557694462|ref|YP_008797516.1| - 0.053 13.1 0.9 0.83 9.1 0.1 2.2 2 0 0 2 2 2 0 AAA domain AAA_23 PF13476.1 gi|557694462|ref|YP_008797516.1| - 0.054 13.8 0.1 0.088 13.1 0.1 1.3 1 0 0 1 1 1 0 AAA domain Hydrolase PF00702.21 gi|557694462|ref|YP_008797516.1| - 0.056 13.8 0.4 0.13 12.6 0.2 1.4 1 1 0 1 1 1 0 haloacid dehalogenase-like hydrolase APS_kinase PF01583.15 gi|557694462|ref|YP_008797516.1| - 0.059 13.0 0.5 0.96 9.0 0.0 2.5 2 0 0 2 2 2 0 Adenylylsulphate kinase AAA_5 PF07728.9 gi|557694462|ref|YP_008797516.1| - 0.065 12.9 0.3 0.39 10.4 0.0 2.3 2 1 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_33 PF13671.1 gi|557694462|ref|YP_008797516.1| - 0.073 12.9 0.6 0.44 10.4 0.4 2.1 1 1 0 1 1 1 0 AAA domain Zot PF05707.7 gi|557694462|ref|YP_008797516.1| - 0.073 12.5 0.6 0.54 9.7 0.0 2.0 2 0 0 2 2 2 0 Zonular occludens toxin (Zot) DUF2070 PF09843.4 gi|557694462|ref|YP_008797516.1| - 0.079 12.4 0.1 0.56 9.6 0.1 2.0 2 0 0 2 2 2 0 Predicted membrane protein (DUF2070) AAA_28 PF13521.1 gi|557694462|ref|YP_008797516.1| - 0.081 12.8 0.0 0.21 11.5 0.0 1.9 2 0 0 2 2 1 0 AAA domain ATP_bind_1 PF03029.12 gi|557694462|ref|YP_008797516.1| - 0.083 12.4 0.2 6.3 6.2 0.0 2.1 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein UPF0079 PF02367.12 gi|557694462|ref|YP_008797516.1| - 0.086 12.4 0.2 0.2 11.2 0.1 1.6 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 AAA_14 PF13173.1 gi|557694462|ref|YP_008797516.1| - 0.12 12.3 0.0 0.92 9.4 0.0 2.2 2 0 0 2 2 2 0 AAA domain HAD PF12710.2 gi|557694462|ref|YP_008797516.1| - 0.13 12.4 0.0 0.36 10.9 0.0 1.4 1 1 0 1 1 1 0 haloacid dehalogenase-like hydrolase NTPase_1 PF03266.10 gi|557694462|ref|YP_008797516.1| - 0.14 11.8 1.1 3.2 7.4 0.1 2.2 2 0 0 2 2 2 0 NTPase MobB PF03205.9 gi|557694462|ref|YP_008797516.1| - 0.14 11.8 0.8 0.33 10.6 0.1 2.0 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B NB-ARC PF00931.17 gi|557694462|ref|YP_008797516.1| - 0.16 10.8 0.4 0.31 9.8 0.3 1.4 1 0 0 1 1 1 0 NB-ARC domain CbiA PF01656.18 gi|557694462|ref|YP_008797516.1| - 0.19 11.1 1.2 0.51 9.7 0.2 2.1 2 1 0 2 2 2 0 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_19 PF13245.1 gi|557694462|ref|YP_008797516.1| - 1 9.1 3.2 7.3 6.4 0.3 2.8 2 2 0 2 2 2 0 Part of AAA domain PfkB PF00294.19 gi|557694463|ref|YP_008797517.1| - 2e-67 227.4 7.4 2.3e-67 227.2 5.2 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Phos_pyr_kin PF08543.7 gi|557694463|ref|YP_008797517.1| - 1.1e-11 44.4 0.3 1.5e-11 43.9 0.2 1.2 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase AAA_26 PF13500.1 gi|557694463|ref|YP_008797517.1| - 0.15 11.6 1.9 4.5 6.8 0.0 2.3 2 0 0 2 2 2 0 AAA domain HMGL-like PF00682.14 gi|557694464|ref|YP_008797518.1| - 2.2e-46 158.4 0.0 7.3e-46 156.7 0.0 1.8 2 0 0 2 2 2 1 HMGL-like LeuA_dimer PF08502.5 gi|557694464|ref|YP_008797518.1| - 9.2e-24 83.7 0.7 2.2e-22 79.2 0.5 2.2 2 0 0 2 2 2 1 LeuA allosteric (dimerisation) domain eIF-5a PF01287.15 gi|557694465|ref|YP_008797519.1| - 5.8e-12 45.3 0.1 8.6e-12 44.8 0.0 1.3 1 0 0 1 1 1 1 Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold EFP_N PF08207.7 gi|557694465|ref|YP_008797519.1| - 1.7e-07 30.9 0.1 1.1e-06 28.4 0.0 2.1 2 0 0 2 2 2 1 Elongation factor P (EF-P) KOW-like domain KOW PF00467.24 gi|557694465|ref|YP_008797519.1| - 0.016 14.9 1.6 0.067 12.9 0.2 2.4 2 0 0 2 2 2 0 KOW motif DUF1609 PF07753.6 gi|557694465|ref|YP_008797519.1| - 0.017 14.4 0.1 0.023 14.0 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1609) ATP_bind_4 PF01902.12 gi|557694466|ref|YP_008797520.1| - 7.3e-70 234.7 0.0 8.2e-70 234.5 0.0 1.0 1 0 0 1 1 1 1 ATP-binding region Asn_synthase PF00733.16 gi|557694466|ref|YP_008797520.1| - 0.0017 17.8 0.0 0.0021 17.6 0.0 1.2 1 0 0 1 1 1 1 Asparagine synthase QueC PF06508.8 gi|557694466|ref|YP_008797520.1| - 0.027 13.7 0.0 0.076 12.2 0.0 1.7 2 0 0 2 2 2 0 Queuosine biosynthesis protein QueC ATP-grasp_2 PF08442.5 gi|557694467|ref|YP_008797521.1| - 7.4e-63 211.5 2.3 1.2e-62 210.9 1.6 1.3 1 0 0 1 1 1 1 ATP-grasp domain Ligase_CoA PF00549.14 gi|557694467|ref|YP_008797521.1| - 1.2e-17 63.9 0.5 2.4e-17 62.9 0.3 1.5 1 0 0 1 1 1 1 CoA-ligase ATP-grasp_5 PF13549.1 gi|557694467|ref|YP_008797521.1| - 9.5e-15 54.4 2.2 1.7e-14 53.5 1.5 1.4 1 0 0 1 1 1 1 ATP-grasp domain GARS_A PF01071.14 gi|557694467|ref|YP_008797521.1| - 1.6e-09 37.5 0.9 3.4e-09 36.5 0.6 1.5 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ATP-grasp_4 PF13535.1 gi|557694467|ref|YP_008797521.1| - 0.00048 19.9 0.0 0.001 18.8 0.0 1.5 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp PF02222.17 gi|557694467|ref|YP_008797521.1| - 0.0014 17.9 0.1 0.0026 17.1 0.1 1.4 1 0 0 1 1 1 1 ATP-grasp domain Succ_CoA_lig PF13607.1 gi|557694467|ref|YP_008797521.1| - 0.006 16.1 1.3 0.012 15.2 0.1 2.0 2 0 0 2 2 2 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding PF02629.14 gi|557694468|ref|YP_008797522.1| - 1.1e-27 96.4 2.6 1.7e-27 95.7 0.3 2.2 2 0 0 2 2 2 1 CoA binding domain Ligase_CoA PF00549.14 gi|557694468|ref|YP_008797522.1| - 1.6e-16 60.3 0.1 2.3e-16 59.7 0.0 1.2 1 0 0 1 1 1 1 CoA-ligase Succ_CoA_lig PF13607.1 gi|557694468|ref|YP_008797522.1| - 3.5e-13 49.3 0.1 1.1e-12 47.7 0.0 1.8 2 0 0 2 2 2 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.1 gi|557694468|ref|YP_008797522.1| - 2.5e-08 34.0 0.3 1.4e-07 31.7 0.1 2.2 2 1 0 2 2 2 1 CoA binding domain GFO_IDH_MocA PF01408.17 gi|557694468|ref|YP_008797522.1| - 0.0012 19.3 0.1 0.0033 17.9 0.1 1.7 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold Metallophos PF00149.23 gi|557694469|ref|YP_008797523.1| - 4.9e-26 91.3 0.2 6.8e-26 90.9 0.1 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.2 gi|557694469|ref|YP_008797523.1| - 4.4e-08 33.1 0.0 6.2e-08 32.6 0.0 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Lactamase_B PF00753.22 gi|557694470|ref|YP_008797524.1| - 4.9e-16 58.9 3.2 7.8e-16 58.3 2.2 1.2 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|557694470|ref|YP_008797524.1| - 0.00041 19.9 0.4 0.00054 19.5 0.3 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain MobB PF03205.9 gi|557694470|ref|YP_008797524.1| - 0.019 14.6 0.0 0.033 13.8 0.0 1.3 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B Ldh_1_N PF00056.18 gi|557694471|ref|YP_008797525.1| - 3.7e-39 133.7 0.6 5.9e-39 133.1 0.4 1.3 1 0 0 1 1 1 1 lactate/malate dehydrogenase, NAD binding domain Ldh_1_C PF02866.13 gi|557694471|ref|YP_008797525.1| - 1.2e-26 93.4 0.0 2.1e-26 92.6 0.0 1.2 1 0 0 1 1 1 1 lactate/malate dehydrogenase, alpha/beta C-terminal domain Glyco_hydro_4 PF02056.11 gi|557694471|ref|YP_008797525.1| - 0.0054 16.0 0.0 0.012 14.9 0.0 1.5 1 0 0 1 1 1 1 Family 4 glycosyl hydrolase DAO PF01266.19 gi|557694471|ref|YP_008797525.1| - 0.038 12.9 1.4 0.087 11.7 0.6 1.7 2 0 0 2 2 2 0 FAD dependent oxidoreductase UDPG_MGDP_dh_N PF03721.9 gi|557694471|ref|YP_008797525.1| - 0.52 9.6 4.2 2.5 7.4 1.5 2.6 2 1 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain zf-C2H2_4 PF13894.1 gi|557694472|ref|YP_008797526.1| - 1.3e-06 28.3 0.2 1.6e-06 28.0 0.1 1.2 1 0 0 1 1 1 1 C2H2-type zinc finger zf-C2H2 PF00096.21 gi|557694472|ref|YP_008797526.1| - 5e-06 26.5 0.2 6.3e-06 26.2 0.2 1.2 1 0 0 1 1 1 1 Zinc finger, C2H2 type zf-Di19 PF05605.7 gi|557694472|ref|YP_008797526.1| - 2.1e-05 24.5 0.0 2.4e-05 24.3 0.0 1.1 1 0 0 1 1 1 1 Drought induced 19 protein (Di19), zinc-binding zf-H2C2_2 PF13465.1 gi|557694472|ref|YP_008797526.1| - 6e-05 23.1 2.5 0.0015 18.6 0.7 2.1 2 0 0 2 2 2 1 Zinc-finger double domain zf-C2H2_jaz PF12171.3 gi|557694472|ref|YP_008797526.1| - 8.2e-05 22.6 0.1 0.00012 22.1 0.1 1.3 1 0 0 1 1 1 1 Zinc-finger double-stranded RNA-binding DUF2225 PF09986.4 gi|557694472|ref|YP_008797526.1| - 0.0093 15.4 0.0 0.0093 15.4 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2225) PyrI_C PF02748.10 gi|557694472|ref|YP_008797526.1| - 0.0097 15.3 0.1 0.011 15.1 0.1 1.2 1 0 0 1 1 1 1 Aspartate carbamoyltransferase regulatory chain, metal binding domain Rad50_zn_hook PF04423.9 gi|557694472|ref|YP_008797526.1| - 0.032 13.7 0.1 0.036 13.5 0.1 1.2 1 0 0 1 1 1 0 Rad50 zinc hook motif zf-C2H2_2 PF12756.2 gi|557694472|ref|YP_008797526.1| - 0.04 14.0 0.0 0.045 13.8 0.0 1.1 1 0 0 1 1 1 0 C2H2 type zinc-finger (2 copies) zf-CHCC PF10276.4 gi|557694472|ref|YP_008797526.1| - 0.075 12.8 0.3 0.091 12.6 0.2 1.2 1 0 0 1 1 1 0 Zinc-finger domain zf-H2C2_5 PF13909.1 gi|557694472|ref|YP_008797526.1| - 0.083 13.1 0.2 0.12 12.6 0.1 1.3 1 0 0 1 1 1 0 C2H2-type zinc-finger domain zf-BED PF02892.10 gi|557694472|ref|YP_008797526.1| - 0.09 12.5 0.2 0.14 11.9 0.1 1.4 1 1 0 1 1 1 0 BED zinc finger Peptidase_M20 PF01546.23 gi|557694473|ref|YP_008797527.1| - 2.6e-30 105.3 0.0 3.7e-30 104.8 0.0 1.2 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.9 gi|557694473|ref|YP_008797527.1| - 1.8e-17 63.1 0.0 3.4e-17 62.1 0.0 1.4 1 0 0 1 1 1 1 Peptidase dimerisation domain Peptidase_M28 PF04389.12 gi|557694473|ref|YP_008797527.1| - 0.031 14.0 0.0 0.045 13.4 0.0 1.3 1 0 0 1 1 1 0 Peptidase family M28 zf-A20 PF01754.11 gi|557694473|ref|YP_008797527.1| - 0.082 12.4 0.5 0.15 11.6 0.4 1.4 1 0 0 1 1 1 0 A20-like zinc finger VIT1 PF01988.14 gi|557694474|ref|YP_008797528.1| - 4.8e-17 62.1 23.4 2e-10 40.5 4.8 2.6 2 1 1 3 3 3 2 VIT family Rubrerythrin PF02915.12 gi|557694474|ref|YP_008797528.1| - 5.7e-06 26.6 5.2 0.01 16.1 0.8 2.2 2 0 0 2 2 2 2 Rubrerythrin Ferritin PF00210.19 gi|557694474|ref|YP_008797528.1| - 0.00085 19.0 0.5 0.00085 19.0 0.3 1.6 2 0 0 2 2 2 1 Ferritin-like domain E1-E2_ATPase PF00122.15 gi|557694474|ref|YP_008797528.1| - 0.02 13.9 1.8 0.67 8.9 1.2 2.2 1 1 0 1 1 1 0 E1-E2 ATPase FxsA PF04186.8 gi|557694474|ref|YP_008797528.1| - 0.022 14.3 1.6 0.057 13.0 1.1 1.7 1 0 0 1 1 1 0 FxsA cytoplasmic membrane protein DUF2207 PF09972.4 gi|557694474|ref|YP_008797528.1| - 0.14 10.7 4.3 0.45 9.0 3.0 1.8 1 1 0 1 1 1 0 Predicted membrane protein (DUF2207) Rab5ip PF07019.7 gi|557694474|ref|YP_008797528.1| - 0.26 11.4 8.2 0.093 12.8 1.4 2.5 2 0 0 2 2 2 0 Rab5-interacting protein (Rab5ip) DUF3040 PF11239.3 gi|557694474|ref|YP_008797528.1| - 0.42 10.6 2.8 0.82 9.7 0.3 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF3040) TRC8_N PF13705.1 gi|557694474|ref|YP_008797528.1| - 0.51 8.8 8.0 1.7 7.1 1.7 2.8 2 1 1 3 3 3 0 TRC8 N-terminal domain Adeno_E3_CR2 PF02439.10 gi|557694474|ref|YP_008797528.1| - 7.2 6.2 8.2 7.4 6.2 1.1 2.8 2 0 0 2 2 2 0 Adenovirus E3 region protein CR2 Saccharop_dh PF03435.13 gi|557694475|ref|YP_008797529.1| - 1.4e-49 169.0 0.0 1.7e-49 168.8 0.0 1.0 1 0 0 1 1 1 1 Saccharopine dehydrogenase ThiF PF00899.16 gi|557694475|ref|YP_008797529.1| - 2.8e-05 23.9 2.7 0.00017 21.3 1.9 2.2 1 1 0 1 1 1 1 ThiF family DapB_N PF01113.15 gi|557694475|ref|YP_008797529.1| - 0.00061 19.7 0.1 0.001 18.9 0.1 1.3 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus Shikimate_DH PF01488.15 gi|557694475|ref|YP_008797529.1| - 0.0019 18.2 0.0 0.0046 17.0 0.0 1.7 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase 3HCDH_N PF02737.13 gi|557694475|ref|YP_008797529.1| - 0.0053 16.4 0.1 0.01 15.5 0.1 1.5 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_3 PF03447.11 gi|557694475|ref|YP_008797529.1| - 0.019 15.3 0.1 0.061 13.7 0.1 1.8 2 0 0 2 2 2 0 Homoserine dehydrogenase, NAD binding domain TrkA_N PF02254.13 gi|557694475|ref|YP_008797529.1| - 0.044 13.7 0.5 0.093 12.7 0.3 1.6 1 0 0 1 1 1 0 TrkA-N domain OCD_Mu_crystall PF02423.10 gi|557694475|ref|YP_008797529.1| - 0.068 11.9 0.0 0.13 11.0 0.0 1.4 1 0 0 1 1 1 0 Ornithine cyclodeaminase/mu-crystallin family Peptidase_M20 PF01546.23 gi|557694476|ref|YP_008797530.1| - 8.7e-33 113.4 0.0 1.2e-32 113.0 0.0 1.2 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 Peptidase_M42 PF05343.9 gi|557694476|ref|YP_008797530.1| - 3.5e-06 25.9 0.3 0.11 11.2 0.0 3.3 3 1 1 4 4 4 2 M42 glutamyl aminopeptidase Peptidase_M28 PF04389.12 gi|557694476|ref|YP_008797530.1| - 2.2e-05 24.2 0.0 0.00056 19.6 0.0 2.1 2 0 0 2 2 2 1 Peptidase family M28 M20_dimer PF07687.9 gi|557694476|ref|YP_008797530.1| - 3.4e-05 23.5 0.0 6.7e-05 22.6 0.0 1.5 1 0 0 1 1 1 1 Peptidase dimerisation domain Aminotran_3 PF00202.16 gi|557694477|ref|YP_008797531.1| - 1.2e-60 205.1 0.1 2.4e-60 204.1 0.0 1.5 2 0 0 2 2 2 1 Aminotransferase class-III Aminotran_1_2 PF00155.16 gi|557694477|ref|YP_008797531.1| - 0.02 13.8 0.0 0.037 12.9 0.0 1.5 1 1 0 1 1 1 0 Aminotransferase class I and II Beta_elim_lyase PF01212.16 gi|557694477|ref|YP_008797531.1| - 0.069 12.2 0.0 0.3 10.2 0.0 2.0 2 1 0 2 2 2 0 Beta-eliminating lyase DUF3198 PF11433.3 gi|557694477|ref|YP_008797531.1| - 0.086 12.7 0.0 0.25 11.2 0.0 1.8 1 0 0 1 1 1 0 Protein of unknown function (DUF3198) Methyltransf_31 PF13847.1 gi|557694477|ref|YP_008797531.1| - 0.14 11.7 0.0 0.41 10.2 0.0 1.7 2 0 0 2 2 2 0 Methyltransferase domain ABC_tran PF00005.22 gi|557694478|ref|YP_008797532.1| - 3.2e-33 114.9 0.0 5.2e-33 114.2 0.0 1.3 1 0 0 1 1 1 1 ABC transporter TOBE_2 PF08402.5 gi|557694478|ref|YP_008797532.1| - 7.2e-10 38.7 0.0 1.8e-09 37.4 0.0 1.7 1 0 0 1 1 1 1 TOBE domain AAA_21 PF13304.1 gi|557694478|ref|YP_008797532.1| - 2.1e-06 27.9 0.0 0.0034 17.4 0.0 2.2 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|557694478|ref|YP_008797532.1| - 0.0017 18.3 0.0 0.0035 17.3 0.0 1.5 1 0 0 1 1 1 1 AAA ATPase domain AAA_15 PF13175.1 gi|557694478|ref|YP_008797532.1| - 0.0031 16.6 0.0 1.4 7.8 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain PhoH PF02562.11 gi|557694478|ref|YP_008797532.1| - 0.0039 16.4 0.0 0.35 10.0 0.0 2.2 2 0 0 2 2 2 1 PhoH-like protein DUF258 PF03193.11 gi|557694478|ref|YP_008797532.1| - 0.0041 16.3 0.1 0.0067 15.6 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_19 PF13245.1 gi|557694478|ref|YP_008797532.1| - 0.0045 16.7 0.0 0.0095 15.6 0.0 1.5 1 0 0 1 1 1 1 Part of AAA domain Arch_ATPase PF01637.13 gi|557694478|ref|YP_008797532.1| - 0.0062 16.2 0.0 0.013 15.1 0.0 1.5 1 0 0 1 1 1 1 Archaeal ATPase AAA PF00004.24 gi|557694478|ref|YP_008797532.1| - 0.012 15.7 0.1 0.057 13.6 0.0 2.0 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.1 gi|557694478|ref|YP_008797532.1| - 0.018 15.1 0.2 0.056 13.5 0.1 1.9 1 1 0 1 1 1 0 AAA domain Rad17 PF03215.10 gi|557694478|ref|YP_008797532.1| - 0.023 13.4 0.0 0.028 13.1 0.0 1.1 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein NTPase_1 PF03266.10 gi|557694478|ref|YP_008797532.1| - 0.023 14.3 0.3 6.3 6.4 0.0 2.9 3 0 0 3 3 3 0 NTPase NACHT PF05729.7 gi|557694478|ref|YP_008797532.1| - 0.053 13.1 0.0 0.1 12.2 0.0 1.4 1 0 0 1 1 1 0 NACHT domain AAA_5 PF07728.9 gi|557694478|ref|YP_008797532.1| - 0.053 13.2 0.0 0.15 11.7 0.0 1.8 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) SMC_N PF02463.14 gi|557694478|ref|YP_008797532.1| - 0.081 12.1 0.1 2.4 7.3 0.0 2.1 1 1 0 1 1 1 0 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|557694478|ref|YP_008797532.1| - 0.086 12.3 0.0 0.19 11.3 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_28 PF13521.1 gi|557694478|ref|YP_008797532.1| - 0.097 12.6 0.0 0.24 11.3 0.0 1.6 1 0 0 1 1 1 0 AAA domain TOBE PF03459.12 gi|557694478|ref|YP_008797532.1| - 0.1 12.7 0.0 0.27 11.3 0.0 1.7 1 0 0 1 1 1 0 TOBE domain AAA_30 PF13604.1 gi|557694478|ref|YP_008797532.1| - 0.13 11.7 0.0 0.24 10.9 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.1 gi|557694478|ref|YP_008797532.1| - 0.16 12.2 0.6 0.36 11.1 0.4 1.9 1 1 0 1 1 1 0 AAA domain AAA_23 PF13476.1 gi|557694478|ref|YP_008797532.1| - 0.16 12.2 0.1 0.34 11.2 0.0 1.5 1 0 0 1 1 1 0 AAA domain IstB_IS21 PF01695.12 gi|557694478|ref|YP_008797532.1| - 0.17 11.2 0.0 0.45 9.9 0.0 1.7 2 0 0 2 2 2 0 IstB-like ATP binding protein BPD_transp_1 PF00528.17 gi|557694479|ref|YP_008797533.1| - 1.2e-16 60.7 18.2 1.2e-16 60.7 12.6 1.8 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component PetM PF08041.6 gi|557694479|ref|YP_008797533.1| - 2.3 7.7 10.9 3.8 7.0 1.3 3.1 2 0 0 2 2 2 0 PetM family of cytochrome b6f complex subunit 7 BPD_transp_1 PF00528.17 gi|557694480|ref|YP_008797534.1| - 4.4e-14 52.4 15.5 4.4e-14 52.4 10.7 2.0 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_8 PF13416.1 gi|557694481|ref|YP_008797535.1| - 7.8e-20 71.7 0.4 1.2e-19 71.1 0.3 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.1 gi|557694481|ref|YP_008797535.1| - 4.9e-13 48.9 0.7 1.6e-08 34.1 0.2 2.4 2 0 0 2 2 2 2 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.20 gi|557694481|ref|YP_008797535.1| - 1.2e-09 38.4 1.9 0.00019 21.3 0.1 2.3 2 0 0 2 2 2 2 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.1 gi|557694481|ref|YP_008797535.1| - 1.1e-05 25.1 0.0 0.012 15.2 0.0 2.4 2 0 0 2 2 2 2 Bacterial extracellular solute-binding protein DUF641 PF04859.7 gi|557694481|ref|YP_008797535.1| - 0.0051 16.5 0.1 3.3 7.4 0.0 2.4 2 0 0 2 2 2 2 Plant protein of unknown function (DUF641) Saccharop_dh PF03435.13 gi|557694482|ref|YP_008797536.1| - 3e-53 181.2 0.0 3.7e-53 180.9 0.0 1.1 1 0 0 1 1 1 1 Saccharopine dehydrogenase Semialdhyde_dh PF01118.19 gi|557694482|ref|YP_008797536.1| - 2.4e-09 37.5 0.1 3.7e-09 36.9 0.1 1.3 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain NAD_binding_10 PF13460.1 gi|557694482|ref|YP_008797536.1| - 1.9e-07 31.3 0.1 3.2e-07 30.5 0.1 1.4 1 0 0 1 1 1 1 NADH(P)-binding 3Beta_HSD PF01073.14 gi|557694482|ref|YP_008797536.1| - 7.8e-05 21.5 0.1 0.00011 21.0 0.0 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Shikimate_DH PF01488.15 gi|557694482|ref|YP_008797536.1| - 0.00022 21.3 0.1 0.00043 20.3 0.1 1.4 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase Epimerase PF01370.16 gi|557694482|ref|YP_008797536.1| - 0.0011 18.4 0.1 0.0016 17.9 0.1 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family DapB_N PF01113.15 gi|557694482|ref|YP_008797536.1| - 0.0014 18.4 0.2 0.0028 17.5 0.1 1.5 1 1 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus NmrA PF05368.8 gi|557694482|ref|YP_008797536.1| - 0.0023 17.2 0.5 0.0034 16.6 0.3 1.2 1 0 0 1 1 1 1 NmrA-like family Ldh_1_N PF00056.18 gi|557694482|ref|YP_008797536.1| - 0.022 14.5 0.1 0.04 13.7 0.1 1.4 1 0 0 1 1 1 0 lactate/malate dehydrogenase, NAD binding domain GFO_IDH_MocA PF01408.17 gi|557694482|ref|YP_008797536.1| - 0.052 14.0 0.0 0.096 13.2 0.0 1.4 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold Ald_Xan_dh_C2 PF02738.13 gi|557694483|ref|YP_008797537.1| - 7e-152 506.5 0.0 8.6e-152 506.2 0.0 1.0 1 0 0 1 1 1 1 Molybdopterin-binding domain of aldehyde dehydrogenase Ald_Xan_dh_C PF01315.17 gi|557694483|ref|YP_008797537.1| - 1.5e-34 118.4 0.7 3.1e-34 117.3 0.2 1.8 2 0 0 2 2 2 1 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain Aminotran_3 PF00202.16 gi|557694484|ref|YP_008797538.1| - 2.6e-92 309.2 0.0 6.9e-92 307.8 0.0 1.6 2 0 0 2 2 2 1 Aminotransferase class-III VirE_N PF08800.5 gi|557694484|ref|YP_008797538.1| - 0.09 12.5 0.0 0.17 11.6 0.0 1.4 1 0 0 1 1 1 0 VirE N-terminal domain Aminotran_3 PF00202.16 gi|557694485|ref|YP_008797539.1| - 1.1e-69 234.8 0.0 1.6e-69 234.3 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-III Aminotran_1_2 PF00155.16 gi|557694485|ref|YP_008797539.1| - 0.0014 17.6 0.0 0.0036 16.3 0.0 1.7 1 1 0 1 1 1 1 Aminotransferase class I and II Aminotran_3 PF00202.16 gi|557694486|ref|YP_008797540.1| - 1.8e-105 352.5 0.0 2.1e-105 352.3 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-III Aminotran_1_2 PF00155.16 gi|557694486|ref|YP_008797540.1| - 0.081 11.8 0.0 0.32 9.8 0.0 1.8 2 0 0 2 2 2 0 Aminotransferase class I and II Alba PF01918.16 gi|557694486|ref|YP_008797540.1| - 0.21 11.1 0.8 4.9 6.8 0.1 2.8 2 2 0 2 2 2 0 Alba Lactamase_B PF00753.22 gi|557694487|ref|YP_008797541.1| - 8.6e-27 94.0 0.7 1.3e-26 93.4 0.5 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|557694487|ref|YP_008797541.1| - 5e-05 22.9 0.1 7.9e-05 22.2 0.1 1.5 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.1 gi|557694487|ref|YP_008797541.1| - 0.0077 15.9 0.0 0.012 15.3 0.0 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain SRP54 PF00448.17 gi|557694487|ref|YP_008797541.1| - 0.038 13.4 0.0 0.058 12.8 0.0 1.2 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain Polysacc_deac_1 PF01522.16 gi|557694487|ref|YP_008797541.1| - 0.045 13.3 0.0 6.5 6.4 0.0 2.4 2 0 0 2 2 2 0 Polysaccharide deacetylase DUF4325 PF14213.1 gi|557694489|ref|YP_008797543.1| - 1.2e-06 28.1 0.5 2.7e-06 26.9 0.3 1.6 1 1 0 1 1 1 1 Domain of unknown function (DUF4325) MS_channel PF00924.13 gi|557694490|ref|YP_008797544.1| - 1.2e-13 50.9 2.1 1.7e-13 50.4 1.4 1.2 1 0 0 1 1 1 1 Mechanosensitive ion channel YfhO PF09586.5 gi|557694490|ref|YP_008797544.1| - 0.55 8.1 2.2 0.69 7.8 1.5 1.1 1 0 0 1 1 1 0 Bacterial membrane protein YfhO COX15-CtaA PF02628.10 gi|557694490|ref|YP_008797544.1| - 6.6 5.5 11.0 8.1 5.2 7.6 1.1 1 0 0 1 1 1 0 Cytochrome oxidase assembly protein PALP PF00291.20 gi|557694491|ref|YP_008797545.1| - 7.5e-56 189.5 2.1 9.4e-56 189.2 1.4 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme ACP_syn_III_C PF08541.5 gi|557694491|ref|YP_008797545.1| - 0.052 13.5 0.9 0.14 12.1 0.0 2.0 2 0 0 2 2 2 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal zinc_ribbon_2 PF13240.1 gi|557694491|ref|YP_008797545.1| - 0.5 9.9 2.3 0.92 9.0 1.6 1.4 1 0 0 1 1 1 0 zinc-ribbon domain DUF1086 PF06461.6 gi|557694492|ref|YP_008797546.1| - 0.11 12.3 0.0 0.18 11.5 0.0 1.3 1 0 0 1 1 1 0 Domain of Unknown Function (DUF1086) Sld5 PF05916.6 gi|557694493|ref|YP_008797547.1| - 2e-06 28.0 0.3 2.8e-06 27.5 0.2 1.2 1 0 0 1 1 1 1 GINS complex protein MCM PF00493.18 gi|557694494|ref|YP_008797548.1| - 1e-131 438.7 0.0 1.3e-131 438.3 0.0 1.1 1 0 0 1 1 1 1 MCM2/3/5 family MCM_N PF14551.1 gi|557694494|ref|YP_008797548.1| - 2.9e-18 66.4 2.2 7.2e-18 65.2 0.3 2.3 2 0 0 2 2 2 1 MCM N-terminal domain Mg_chelatase PF01078.16 gi|557694494|ref|YP_008797548.1| - 6.4e-08 31.9 0.1 0.0015 17.7 0.0 2.3 1 1 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_5 PF07728.9 gi|557694494|ref|YP_008797548.1| - 3.6e-07 29.9 0.0 9.8e-07 28.5 0.0 1.7 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_16 PF13191.1 gi|557694494|ref|YP_008797548.1| - 0.00017 21.6 0.7 0.017 15.0 0.0 2.8 2 0 0 2 2 2 1 AAA ATPase domain AAA PF00004.24 gi|557694494|ref|YP_008797548.1| - 0.0011 19.2 0.1 0.004 17.3 0.0 2.1 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_3 PF07726.6 gi|557694494|ref|YP_008797548.1| - 0.0015 18.1 0.0 0.0054 16.3 0.0 1.9 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.21 gi|557694494|ref|YP_008797548.1| - 0.0036 16.8 0.0 2.8 7.3 0.0 2.4 2 0 0 2 2 2 2 Sigma-54 interaction domain AAA_22 PF13401.1 gi|557694494|ref|YP_008797548.1| - 0.0052 16.9 0.1 0.031 14.3 0.0 2.3 1 1 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|557694494|ref|YP_008797548.1| - 0.04 13.6 0.4 0.14 11.8 0.3 2.0 1 0 0 1 1 1 0 Part of AAA domain NACHT PF05729.7 gi|557694494|ref|YP_008797548.1| - 0.04 13.5 0.1 0.42 10.2 0.0 2.4 2 0 0 2 2 2 0 NACHT domain AAA_25 PF13481.1 gi|557694494|ref|YP_008797548.1| - 0.077 12.3 0.2 0.41 10.0 0.0 2.4 2 0 0 2 2 2 0 AAA domain NTPase_1 PF03266.10 gi|557694494|ref|YP_008797548.1| - 0.09 12.4 0.6 15 5.2 0.0 2.6 1 1 1 2 2 2 0 NTPase AAA_10 PF12846.2 gi|557694494|ref|YP_008797548.1| - 0.095 12.1 0.0 0.41 10.0 0.0 1.9 1 1 0 1 1 1 0 AAA-like domain Miro PF08477.8 gi|557694494|ref|YP_008797548.1| - 0.11 12.9 0.0 0.28 11.6 0.0 1.7 1 0 0 1 1 1 0 Miro-like protein DEAD PF00270.24 gi|557694495|ref|YP_008797549.1| - 1.7e-27 96.0 0.0 1.2e-26 93.1 0.0 2.1 2 0 0 2 2 2 1 DEAD/DEAH box helicase HHH_5 PF14520.1 gi|557694495|ref|YP_008797549.1| - 1.4e-12 47.6 0.0 6.5e-12 45.4 0.0 2.2 2 0 0 2 2 2 1 Helix-hairpin-helix domain HHH_2 PF12826.2 gi|557694495|ref|YP_008797549.1| - 3.8e-09 36.2 0.0 1e-08 34.9 0.0 1.7 1 0 0 1 1 1 1 Helix-hairpin-helix motif Helicase_C PF00271.26 gi|557694495|ref|YP_008797549.1| - 2.8e-08 33.4 0.0 5.5e-08 32.5 0.0 1.5 1 0 0 1 1 1 1 Helicase conserved C-terminal domain Sec63 PF02889.11 gi|557694495|ref|YP_008797549.1| - 1.2e-07 31.2 0.0 2.1e-07 30.4 0.0 1.4 1 1 0 1 1 1 1 Sec63 Brl domain DNA_pol_lambd_f PF10391.4 gi|557694495|ref|YP_008797549.1| - 3.2e-06 26.5 0.0 7.4e-06 25.4 0.0 1.5 1 0 0 1 1 1 1 Fingers domain of DNA polymerase lambda HHH PF00633.18 gi|557694495|ref|YP_008797549.1| - 1.1e-05 24.8 1.3 0.0055 16.3 0.1 2.9 3 0 0 3 3 3 2 Helix-hairpin-helix motif ResIII PF04851.10 gi|557694495|ref|YP_008797549.1| - 4.3e-05 23.4 0.0 0.00024 20.9 0.0 2.0 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit Cdd1 PF11731.3 gi|557694495|ref|YP_008797549.1| - 0.07 13.0 0.0 0.25 11.3 0.0 1.8 1 1 1 2 2 2 0 Pathogenicity locus RNA_pol_A_CTD PF03118.10 gi|557694495|ref|YP_008797549.1| - 0.071 12.5 0.0 0.16 11.3 0.0 1.7 1 0 0 1 1 1 0 Bacterial RNA polymerase, alpha chain C terminal domain HHH_3 PF12836.2 gi|557694495|ref|YP_008797549.1| - 0.087 12.7 0.0 0.27 11.2 0.0 1.8 1 1 1 2 2 2 0 Helix-hairpin-helix motif KaiC PF06745.8 gi|557694495|ref|YP_008797549.1| - 0.1 11.6 0.0 0.19 10.8 0.0 1.4 1 0 0 1 1 1 0 KaiC DSPc PF00782.15 gi|557694496|ref|YP_008797550.1| - 1.2e-21 76.6 0.0 1.4e-21 76.4 0.0 1.1 1 0 0 1 1 1 1 Dual specificity phosphatase, catalytic domain Y_phosphatase PF00102.22 gi|557694496|ref|YP_008797550.1| - 2.1e-09 37.1 0.0 2.5e-09 36.8 0.0 1.1 1 0 0 1 1 1 1 Protein-tyrosine phosphatase Y_phosphatase2 PF03162.8 gi|557694496|ref|YP_008797550.1| - 2.5e-09 36.7 0.0 3.4e-09 36.2 0.0 1.1 1 0 0 1 1 1 1 Tyrosine phosphatase family PTPlike_phytase PF14566.1 gi|557694496|ref|YP_008797550.1| - 1.4e-08 34.9 0.0 1.6e-08 34.6 0.0 1.2 1 0 0 1 1 1 1 Inositol hexakisphosphate CDKN3 PF05706.7 gi|557694496|ref|YP_008797550.1| - 4e-06 26.3 0.0 5.4e-06 25.9 0.0 1.1 1 0 0 1 1 1 1 Cyclin-dependent kinase inhibitor 3 (CDKN3) Y_phosphatase3 PF13350.1 gi|557694496|ref|YP_008797550.1| - 0.00031 21.0 0.1 0.0025 18.0 0.1 2.0 1 1 1 2 2 2 1 Tyrosine phosphatase family ParBc PF02195.13 gi|557694497|ref|YP_008797551.1| - 1.4e-06 28.3 0.1 4.7e-06 26.6 0.0 1.9 2 0 0 2 2 2 1 ParB-like nuclease domain LAP2alpha PF11560.3 gi|557694498|ref|YP_008797552.1| - 0.096 11.8 0.0 0.096 11.8 0.0 1.0 1 0 0 1 1 1 0 Lamina-associated polypeptide 2 alpha Pribosyltran_N PF13793.1 gi|557694499|ref|YP_008797553.1| - 1.7e-34 118.0 0.3 6.9e-30 103.1 0.0 2.2 2 0 0 2 2 2 2 N-terminal domain of ribose phosphate pyrophosphokinase Pribosyltran PF00156.22 gi|557694499|ref|YP_008797553.1| - 9.1e-16 57.7 9.4 1.3e-15 57.2 0.6 3.6 3 1 1 4 4 4 1 Phosphoribosyl transferase domain Pribosyl_synth PF14572.1 gi|557694499|ref|YP_008797553.1| - 9.9e-08 31.9 1.3 1.8e-07 31.0 0.2 2.0 3 0 0 3 3 3 1 Phosphoribosyl synthetase-associated domain UPRTase PF14681.1 gi|557694499|ref|YP_008797553.1| - 6.3e-07 28.8 0.4 1.4e-06 27.7 0.2 1.7 2 0 0 2 2 2 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.1 gi|557694499|ref|YP_008797553.1| - 8.3e-06 25.2 0.3 2.5e-05 23.6 0.1 1.8 1 1 1 2 2 2 1 Phosphoribosyl transferase AIG1 PF04548.11 gi|557694499|ref|YP_008797553.1| - 0.12 11.5 0.1 0.19 10.8 0.1 1.2 1 0 0 1 1 1 0 AIG1 family UPF0020 PF01170.13 gi|557694500|ref|YP_008797554.1| - 9.7e-26 90.4 0.0 1.6e-25 89.7 0.0 1.3 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_26 PF13659.1 gi|557694500|ref|YP_008797554.1| - 3.6e-11 43.1 0.2 3.6e-11 43.1 0.1 1.9 2 1 0 2 2 2 1 Methyltransferase domain Cons_hypoth95 PF03602.10 gi|557694500|ref|YP_008797554.1| - 3.8e-07 29.6 0.0 6.3e-07 28.9 0.0 1.3 1 0 0 1 1 1 1 Conserved hypothetical protein 95 THUMP PF02926.12 gi|557694500|ref|YP_008797554.1| - 5e-07 29.7 0.3 7.8e-07 29.0 0.2 1.4 1 0 0 1 1 1 1 THUMP domain N6_N4_Mtase PF01555.13 gi|557694500|ref|YP_008797554.1| - 4.2e-06 26.4 0.0 2.7e-05 23.7 0.0 2.1 2 0 0 2 2 2 1 DNA methylase Methyltransf_15 PF09445.5 gi|557694500|ref|YP_008797554.1| - 0.0067 15.9 0.0 0.012 15.1 0.0 1.4 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Lactamase_B_2 PF12706.2 gi|557694501|ref|YP_008797555.1| - 8.3e-31 107.0 0.0 1.2e-30 106.5 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|557694501|ref|YP_008797555.1| - 5.4e-11 42.4 0.1 2.5e-08 33.8 0.1 2.3 2 0 0 2 2 2 2 Metallo-beta-lactamase superfamily Lactamase_B_4 PF13691.1 gi|557694501|ref|YP_008797555.1| - 0.01 15.3 0.0 0.02 14.3 0.0 1.4 1 0 0 1 1 1 0 tRNase Z endonuclease RNA_binding PF01877.12 gi|557694502|ref|YP_008797556.1| - 6.5e-21 74.5 0.1 1.1e-20 73.7 0.1 1.4 1 1 0 1 1 1 1 RNA binding Pyr_redox PF00070.22 gi|557694502|ref|YP_008797556.1| - 0.064 13.6 0.1 0.15 12.4 0.0 1.6 1 1 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase CBS PF00571.23 gi|557694503|ref|YP_008797557.1| - 2.2e-30 104.1 1.7 1.1e-14 53.9 0.0 2.1 2 0 0 2 2 2 2 CBS domain Thymidylate_kin PF02223.12 gi|557694504|ref|YP_008797558.1| - 2.4e-16 59.6 0.0 2.7e-15 56.2 0.0 2.0 1 1 0 1 1 1 1 Thymidylate kinase AAA_33 PF13671.1 gi|557694504|ref|YP_008797558.1| - 2.6e-06 27.3 0.1 0.049 13.5 0.0 2.1 2 0 0 2 2 2 2 AAA domain MobB PF03205.9 gi|557694504|ref|YP_008797558.1| - 0.00012 21.8 0.1 0.00026 20.7 0.1 1.6 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_18 PF13238.1 gi|557694504|ref|YP_008797558.1| - 0.0012 19.1 1.1 0.0092 16.2 0.7 2.2 1 1 0 1 1 1 1 AAA domain NACHT PF05729.7 gi|557694504|ref|YP_008797558.1| - 0.0017 18.0 0.0 0.0035 16.9 0.0 1.5 1 0 0 1 1 1 1 NACHT domain AAA_28 PF13521.1 gi|557694504|ref|YP_008797558.1| - 0.004 17.1 0.0 0.0071 16.3 0.0 1.4 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.1 gi|557694504|ref|YP_008797558.1| - 0.0054 16.3 0.0 0.0079 15.7 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|557694504|ref|YP_008797558.1| - 0.013 15.5 0.1 0.034 14.3 0.0 1.8 2 0 0 2 2 2 0 AAA domain Arch_ATPase PF01637.13 gi|557694504|ref|YP_008797558.1| - 0.025 14.2 0.3 0.043 13.5 0.2 1.9 1 1 0 1 1 1 0 Archaeal ATPase NTPase_1 PF03266.10 gi|557694504|ref|YP_008797558.1| - 0.026 14.2 1.3 0.041 13.6 0.1 1.9 3 0 0 3 3 3 0 NTPase AAA_16 PF13191.1 gi|557694504|ref|YP_008797558.1| - 0.026 14.4 0.1 0.24 11.3 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain ArgK PF03308.11 gi|557694504|ref|YP_008797558.1| - 0.031 13.0 0.3 0.09 11.5 0.1 1.8 2 0 0 2 2 2 0 ArgK protein NB-ARC PF00931.17 gi|557694504|ref|YP_008797558.1| - 0.033 13.0 0.3 0.055 12.3 0.2 1.3 1 0 0 1 1 1 0 NB-ARC domain AAA PF00004.24 gi|557694504|ref|YP_008797558.1| - 0.041 14.0 0.6 0.12 12.5 0.4 2.0 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_19 PF13245.1 gi|557694504|ref|YP_008797558.1| - 0.078 12.7 0.0 0.14 11.9 0.0 1.5 1 0 0 1 1 1 0 Part of AAA domain AAA_10 PF12846.2 gi|557694504|ref|YP_008797558.1| - 0.099 12.0 0.0 0.29 10.5 0.0 1.8 2 0 0 2 2 2 0 AAA-like domain AAA_17 PF13207.1 gi|557694504|ref|YP_008797558.1| - 0.11 13.3 0.1 0.19 12.5 0.1 1.8 1 1 0 1 1 1 0 AAA domain LigT_PEase PF02834.11 gi|557694505|ref|YP_008797559.1| - 1e-28 99.1 0.0 4.4e-19 68.2 0.0 2.1 2 0 0 2 2 2 2 LigT like Phosphoesterase 2_5_RNA_ligase2 PF13563.1 gi|557694505|ref|YP_008797559.1| - 1.1e-14 54.3 0.0 1.4e-14 54.0 0.0 1.2 1 0 0 1 1 1 1 2'-5' RNA ligase superfamily AKAP7_NLS PF10469.4 gi|557694505|ref|YP_008797559.1| - 3e-14 53.2 0.0 3.7e-14 52.9 0.0 1.1 1 0 0 1 1 1 1 AKAP7 2'5' RNA ligase-like domain tRNA_NucTransf2 PF09249.6 gi|557694506|ref|YP_008797560.1| - 3.2e-35 120.4 0.0 5.5e-35 119.6 0.0 1.4 1 0 0 1 1 1 1 tRNA nucleotidyltransferase, second domain NTP_transf_2 PF01909.18 gi|557694506|ref|YP_008797560.1| - 8.5e-06 26.0 0.0 1.8e-05 25.0 0.0 1.4 1 0 0 1 1 1 1 Nucleotidyltransferase domain RIO1 PF01163.17 gi|557694507|ref|YP_008797561.1| - 5.7e-09 35.5 0.1 9.7e-09 34.8 0.1 1.4 1 0 0 1 1 1 1 RIO1 family Pkinase_Tyr PF07714.12 gi|557694507|ref|YP_008797561.1| - 7.3e-06 25.2 0.3 1.1e-05 24.5 0.1 1.3 1 1 0 1 1 1 1 Protein tyrosine kinase Pkinase PF00069.20 gi|557694507|ref|YP_008797561.1| - 1.2e-05 24.5 0.1 2.6e-05 23.4 0.1 1.5 1 1 0 1 1 1 1 Protein kinase domain Choline_kinase PF01633.15 gi|557694507|ref|YP_008797561.1| - 0.003 17.1 0.1 0.0037 16.8 0.1 1.1 1 0 0 1 1 1 1 Choline/ethanolamine kinase APH PF01636.18 gi|557694507|ref|YP_008797561.1| - 0.057 13.1 0.0 0.079 12.6 0.0 1.3 1 0 0 1 1 1 0 Phosphotransferase enzyme family FAD-oxidase_C PF02913.14 gi|557694508|ref|YP_008797562.1| - 1.1e-59 201.7 0.1 1.6e-59 201.2 0.0 1.2 1 0 0 1 1 1 1 FAD linked oxidases, C-terminal domain FAD_binding_4 PF01565.18 gi|557694508|ref|YP_008797562.1| - 2.1e-43 147.1 0.6 5.4e-43 145.8 0.1 2.0 2 0 0 2 2 2 1 FAD binding domain AP_endonuc_2 PF01261.19 gi|557694508|ref|YP_008797562.1| - 0.024 13.9 0.0 2.7 7.2 0.0 2.6 2 1 0 2 2 2 0 Xylose isomerase-like TIM barrel ROK PF00480.15 gi|557694509|ref|YP_008797563.1| - 1.2e-33 116.3 0.1 1.7e-33 115.9 0.0 1.2 1 0 0 1 1 1 1 ROK family Glucokinase PF02685.11 gi|557694509|ref|YP_008797563.1| - 0.00014 20.7 0.0 0.0029 16.4 0.0 2.6 1 1 0 1 1 1 1 Glucokinase AsnC_trans_reg PF01037.16 gi|557694510|ref|YP_008797564.1| - 2.2e-12 46.5 0.1 5.9e-08 32.2 0.0 2.2 2 0 0 2 2 2 2 AsnC family DUF4460 PF14687.1 gi|557694510|ref|YP_008797564.1| - 0.0092 15.7 0.0 0.013 15.2 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4460) Flavin_Reduct PF01613.13 gi|557694511|ref|YP_008797565.1| - 1.8e-39 135.0 0.1 2.2e-39 134.7 0.1 1.0 1 0 0 1 1 1 1 Flavin reductase like domain DUF447 PF04289.7 gi|557694511|ref|YP_008797565.1| - 0.022 14.3 0.0 0.025 14.1 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF447) tRNA-synt_2 PF00152.15 gi|557694512|ref|YP_008797566.1| - 3e-87 292.5 0.7 4.1e-87 292.0 0.5 1.2 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) tRNA_anti-codon PF01336.20 gi|557694512|ref|YP_008797566.1| - 5.7e-10 38.9 1.4 1.1e-09 38.0 1.0 1.4 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA-synt_2b PF00587.20 gi|557694512|ref|YP_008797566.1| - 0.00053 19.6 0.3 0.049 13.2 0.2 2.3 2 0 0 2 2 2 2 tRNA synthetase class II core domain (G, H, P, S and T) tRNA-synt_2d PF01409.15 gi|557694512|ref|YP_008797566.1| - 0.067 12.3 2.6 0.25 10.5 0.1 2.9 3 1 0 3 3 3 0 tRNA synthetases class II core domain (F) KH_5 PF13184.1 gi|557694513|ref|YP_008797567.1| - 0.00071 19.3 0.0 0.0018 18.0 0.0 1.7 2 0 0 2 2 2 1 NusA-like KH domain DUF2225 PF09986.4 gi|557694513|ref|YP_008797567.1| - 0.022 14.2 0.0 0.027 13.9 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2225) Alba PF01918.16 gi|557694514|ref|YP_008797568.1| - 9.2e-17 60.4 0.3 1.3e-16 59.9 0.2 1.2 1 0 0 1 1 1 1 Alba Rpp20 PF12328.3 gi|557694514|ref|YP_008797568.1| - 0.0013 18.4 0.8 0.0019 17.8 0.5 1.3 1 1 0 1 1 1 1 Rpp20 subunit of nuclear RNase MRP and P UPF0137 PF03677.8 gi|557694514|ref|YP_008797568.1| - 0.045 13.2 0.1 0.052 13.0 0.0 1.0 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0137) Ribosomal_L40e PF01020.12 gi|557694515|ref|YP_008797569.1| - 6.8e-05 22.3 5.0 8.3e-05 22.1 3.4 1.1 1 0 0 1 1 1 1 Ribosomal L40e family zinc_ribbon_6 PF14599.1 gi|557694515|ref|YP_008797569.1| - 0.002 17.8 3.3 0.0038 16.9 2.3 1.6 1 1 0 1 1 1 1 Zinc-ribbon zinc_ribbon_2 PF13240.1 gi|557694515|ref|YP_008797569.1| - 0.0042 16.5 0.6 0.0057 16.1 0.4 1.2 1 0 0 1 1 1 1 zinc-ribbon domain CTV_P23 PF04808.7 gi|557694515|ref|YP_008797569.1| - 0.008 15.5 0.9 0.008 15.5 0.7 1.0 1 0 0 1 1 1 1 Citrus tristeza virus (CTV) P23 protein DZR PF12773.2 gi|557694515|ref|YP_008797569.1| - 0.0081 15.9 0.7 0.009 15.8 0.5 1.1 1 0 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|557694515|ref|YP_008797569.1| - 0.014 14.5 1.2 0.018 14.2 0.8 1.1 1 0 0 1 1 1 0 zinc-ribbon domain DUF35_N PF12172.3 gi|557694515|ref|YP_008797569.1| - 0.056 13.3 2.6 0.48 10.4 0.2 2.1 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) HypA PF01155.14 gi|557694515|ref|YP_008797569.1| - 0.072 12.7 0.3 0.079 12.6 0.2 1.1 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family zf-RanBP PF00641.13 gi|557694515|ref|YP_008797569.1| - 0.17 11.0 2.9 0.23 10.6 2.0 1.3 1 0 0 1 1 1 0 Zn-finger in Ran binding protein and others ZZ PF00569.12 gi|557694515|ref|YP_008797569.1| - 0.21 11.1 2.8 0.27 10.8 1.9 1.2 1 0 0 1 1 1 0 Zinc finger, ZZ type zf-tcix PF14952.1 gi|557694515|ref|YP_008797569.1| - 0.87 8.9 7.7 1.1 8.6 5.2 1.5 1 1 0 1 1 1 0 Putative treble-clef, zinc-finger, Zn-binding Ribosomal_L37e PF01907.14 gi|557694515|ref|YP_008797569.1| - 0.92 9.3 6.0 2.1 8.2 4.1 1.6 1 1 1 2 2 2 0 Ribosomal protein L37e DUF326 PF03860.11 gi|557694515|ref|YP_008797569.1| - 1.9 8.4 5.8 2.4 8.1 0.2 2.2 2 0 0 2 2 2 0 Domain of Unknown Function (DUF326) zf-CCHC_6 PF15288.1 gi|557694515|ref|YP_008797569.1| - 2.3 7.9 7.7 8.9 6.0 0.6 2.3 2 0 0 2 2 2 0 Zinc knuckle DNA_RNApol_7kD PF03604.8 gi|557694515|ref|YP_008797569.1| - 2.4 7.7 9.4 10 5.6 6.5 2.0 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit zf-trcl PF13451.1 gi|557694515|ref|YP_008797569.1| - 2.6 7.7 10.2 3.4 7.3 2.0 2.2 1 1 1 2 2 2 0 Probable zinc-binding domain zf-Sec23_Sec24 PF04810.10 gi|557694515|ref|YP_008797569.1| - 3 7.4 6.1 2.3 7.8 0.7 2.1 2 0 0 2 2 2 0 Sec23/Sec24 zinc finger zf-C2H2_3 PF13878.1 gi|557694515|ref|YP_008797569.1| - 4.5 6.9 5.0 6.3 6.4 0.1 2.0 1 1 1 2 2 2 0 zinc-finger of acetyl-transferase ESCO DNA_primase_S PF01896.14 gi|557694516|ref|YP_008797570.1| - 1.8e-16 60.2 0.0 6.6e-16 58.4 0.0 1.9 1 1 0 1 1 1 1 Eukaryotic and archaeal DNA primase small subunit DZR PF12773.2 gi|557694516|ref|YP_008797570.1| - 0.28 11.0 7.9 0.5 10.2 5.5 1.4 1 0 0 1 1 1 0 Double zinc ribbon A2L_zn_ribbon PF08792.5 gi|557694516|ref|YP_008797570.1| - 1.4 8.5 7.5 1.7 8.1 0.1 2.5 2 0 0 2 2 2 0 A2L zinc ribbon domain CBS PF00571.23 gi|557694517|ref|YP_008797571.1| - 3.5e-23 81.1 5.0 1.6e-14 53.3 0.2 2.3 2 0 0 2 2 2 2 CBS domain ArgJ PF01960.13 gi|557694517|ref|YP_008797571.1| - 0.0038 15.6 0.0 0.0056 15.1 0.0 1.3 1 1 0 1 1 1 1 ArgJ family IF3_N PF05198.11 gi|557694517|ref|YP_008797571.1| - 0.14 12.1 0.1 21 5.1 0.0 2.5 2 0 0 2 2 2 0 Translation initiation factor IF-3, N-terminal domain ORC3_N PF07034.6 gi|557694518|ref|YP_008797572.1| - 0.0016 17.4 0.0 0.002 17.1 0.0 1.1 1 0 0 1 1 1 1 Origin recognition complex (ORC) subunit 3 N-terminus MobB PF03205.9 gi|557694519|ref|YP_008797573.1| - 0.001 18.7 0.0 0.0025 17.4 0.0 1.7 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B Amidinotransf PF02274.12 gi|557694519|ref|YP_008797573.1| - 0.041 12.9 0.0 1.1 8.2 0.0 2.2 1 1 1 2 2 2 0 Amidinotransferase Clp1 PF06807.9 gi|557694519|ref|YP_008797573.1| - 0.041 13.6 0.0 3.6 7.3 0.0 2.3 2 0 0 2 2 2 0 Pre-mRNA cleavage complex II protein Clp1 ATP_bind_1 PF03029.12 gi|557694519|ref|YP_008797573.1| - 0.046 13.2 0.0 0.069 12.6 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein AAA_22 PF13401.1 gi|557694519|ref|YP_008797573.1| - 0.14 12.3 0.0 1.1 9.3 0.0 2.3 2 0 0 2 2 2 0 AAA domain Elf1 PF05129.8 gi|557694521|ref|YP_008797575.1| - 8.1e-18 63.9 0.1 9.6e-18 63.6 0.1 1.0 1 0 0 1 1 1 1 Transcription elongation factor Elf1 like Lar_restr_allev PF14354.1 gi|557694521|ref|YP_008797575.1| - 1.9e-05 24.8 0.5 2.3e-05 24.5 0.3 1.2 1 0 0 1 1 1 1 Restriction alleviation protein Lar DZR PF12773.2 gi|557694521|ref|YP_008797575.1| - 0.02 14.6 0.3 0.032 14.0 0.2 1.3 1 0 0 1 1 1 0 Double zinc ribbon Rubredoxin PF00301.15 gi|557694521|ref|YP_008797575.1| - 0.03 14.2 0.4 0.68 9.8 0.0 2.4 2 0 0 2 2 2 0 Rubredoxin zf-CHY PF05495.7 gi|557694521|ref|YP_008797575.1| - 0.032 14.3 0.1 0.036 14.2 0.0 1.2 1 0 0 1 1 1 0 CHY zinc finger zf-H2C2_2 PF13465.1 gi|557694521|ref|YP_008797575.1| - 0.13 12.6 4.4 1.3 9.4 0.3 2.7 2 1 1 3 3 3 0 Zinc-finger double domain A2L_zn_ribbon PF08792.5 gi|557694521|ref|YP_008797575.1| - 0.13 11.7 1.7 8.5 5.9 0.1 2.2 2 0 0 2 2 2 0 A2L zinc ribbon domain Zn-ribbon_8 PF09723.5 gi|557694521|ref|YP_008797575.1| - 0.16 11.9 2.6 2.5 8.1 1.7 2.2 1 1 1 2 2 2 0 Zinc ribbon domain zinc_ribbon_5 PF13719.1 gi|557694521|ref|YP_008797575.1| - 0.17 11.4 2.5 0.52 9.9 1.7 1.8 1 1 0 1 1 1 0 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|557694521|ref|YP_008797575.1| - 0.23 10.7 2.1 3.4 6.9 0.2 2.3 2 0 0 2 2 2 0 zinc-ribbon domain OrfB_Zn_ribbon PF07282.6 gi|557694521|ref|YP_008797575.1| - 0.29 10.8 1.4 0.57 9.8 1.0 1.6 1 1 0 1 1 1 0 Putative transposase DNA-binding domain zinc_ribbon_4 PF13717.1 gi|557694521|ref|YP_008797575.1| - 0.39 10.4 2.6 3.4 7.4 0.2 2.1 1 1 1 2 2 2 0 zinc-ribbon domain Ogr_Delta PF04606.7 gi|557694521|ref|YP_008797575.1| - 0.74 9.5 3.3 1.3 8.7 0.1 2.1 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger PcrB PF01884.12 gi|557694522|ref|YP_008797576.1| - 5.7e-67 225.3 0.8 7.3e-67 225.0 0.6 1.0 1 0 0 1 1 1 1 PcrB family His_biosynth PF00977.16 gi|557694522|ref|YP_008797576.1| - 7.2e-10 38.5 0.6 2.6e-09 36.6 0.1 1.8 2 0 0 2 2 2 1 Histidine biosynthesis protein ThiG PF05690.9 gi|557694522|ref|YP_008797576.1| - 3.7e-07 29.4 4.0 0.00068 18.7 1.3 2.1 2 0 0 2 2 2 2 Thiazole biosynthesis protein ThiG Dus PF01207.12 gi|557694522|ref|YP_008797576.1| - 2.1e-06 26.8 0.5 6.9e-05 21.8 0.2 2.1 2 0 0 2 2 2 1 Dihydrouridine synthase (Dus) DHO_dh PF01180.16 gi|557694522|ref|YP_008797576.1| - 3.7e-06 26.1 2.1 4.7e-06 25.7 0.5 1.7 2 0 0 2 2 2 1 Dihydroorotate dehydrogenase NanE PF04131.9 gi|557694522|ref|YP_008797576.1| - 2.2e-05 23.5 0.6 0.028 13.3 0.1 2.2 2 0 0 2 2 2 2 Putative N-acetylmannosamine-6-phosphate epimerase Trp_syntA PF00290.15 gi|557694522|ref|YP_008797576.1| - 5.8e-05 21.7 0.4 0.00067 18.2 0.1 2.1 2 0 0 2 2 2 1 Tryptophan synthase alpha chain NMO PF03060.10 gi|557694522|ref|YP_008797576.1| - 0.00014 21.1 3.1 0.0093 15.1 2.2 2.2 2 0 0 2 2 2 1 Nitronate monooxygenase FMN_dh PF01070.13 gi|557694522|ref|YP_008797576.1| - 0.00018 20.4 2.9 0.00081 18.3 1.3 2.0 2 0 0 2 2 2 1 FMN-dependent dehydrogenase IMPDH PF00478.20 gi|557694522|ref|YP_008797576.1| - 0.0007 18.5 1.7 0.054 12.3 0.2 2.1 2 0 0 2 2 2 2 IMP dehydrogenase / GMP reductase domain TMP-TENI PF02581.12 gi|557694522|ref|YP_008797576.1| - 0.0024 17.0 2.9 0.0096 15.0 0.3 2.3 2 0 0 2 2 2 1 Thiamine monophosphate synthase/TENI BtpA PF03437.10 gi|557694522|ref|YP_008797576.1| - 0.0053 16.0 1.2 1.3 8.1 0.3 2.3 2 0 0 2 2 2 2 BtpA family B12-binding PF02310.14 gi|557694522|ref|YP_008797576.1| - 0.0079 16.0 1.4 0.14 12.0 0.4 2.4 2 0 0 2 2 2 1 B12 binding domain Glu_synthase PF01645.12 gi|557694522|ref|YP_008797576.1| - 0.0085 15.0 1.1 0.014 14.3 0.1 1.7 2 0 0 2 2 2 1 Conserved region in glutamate synthase DHDPS PF00701.17 gi|557694522|ref|YP_008797576.1| - 0.0088 14.6 0.5 0.019 13.5 0.0 1.7 2 0 0 2 2 2 1 Dihydrodipicolinate synthetase family Ribul_P_3_epim PF00834.14 gi|557694522|ref|YP_008797576.1| - 0.0091 15.1 0.5 0.02 13.9 0.2 1.6 2 0 0 2 2 2 1 Ribulose-phosphate 3 epimerase family G3P_antiterm PF04309.7 gi|557694522|ref|YP_008797576.1| - 0.03 13.3 1.8 0.048 12.6 0.4 1.8 2 0 0 2 2 2 0 Glycerol-3-phosphate responsive antiterminator DUF561 PF04481.7 gi|557694522|ref|YP_008797576.1| - 0.036 13.0 0.7 0.39 9.6 0.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF561) RNA_pol_Rpb5_C PF01191.14 gi|557694523|ref|YP_008797577.1| - 3e-32 110.0 0.2 3.2e-32 109.9 0.2 1.0 1 0 0 1 1 1 1 RNA polymerase Rpb5, C-terminal domain RNA_pol_Rpb2_6 PF00562.23 gi|557694524|ref|YP_008797578.1| - 3e-116 388.3 0.0 4.9e-116 387.6 0.0 1.3 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 6 RNA_pol_Rpb2_1 PF04563.10 gi|557694524|ref|YP_008797578.1| - 2e-49 167.3 0.1 3.5e-49 166.4 0.0 1.5 2 0 0 2 2 2 1 RNA polymerase beta subunit RNA_pol_Rpb2_2 PF04561.9 gi|557694524|ref|YP_008797578.1| - 3.6e-27 95.0 0.0 5.9e-27 94.3 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 2 RNA_pol_Rpb2_3 PF04565.11 gi|557694524|ref|YP_008797578.1| - 4.9e-25 87.0 0.0 1e-24 86.0 0.0 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 3 RNA_pol_Rpb2_7 PF04560.15 gi|557694524|ref|YP_008797578.1| - 5.9e-25 87.3 0.0 1.4e-24 86.1 0.0 1.7 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 7 RNA_pol_Rpb2_4 PF04566.8 gi|557694524|ref|YP_008797578.1| - 8.8e-18 63.8 2.4 8.8e-18 63.8 1.7 2.1 2 0 0 2 2 2 1 RNA polymerase Rpb2, domain 4 RNA_pol_Rpb2_5 PF04567.12 gi|557694524|ref|YP_008797578.1| - 2.4e-14 53.0 0.2 5.2e-14 51.9 0.1 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 5 Auto_anti-p27 PF06677.7 gi|557694524|ref|YP_008797578.1| - 0.0086 15.8 0.7 0.02 14.6 0.5 1.6 1 0 0 1 1 1 1 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) RRS1 PF04939.7 gi|557694524|ref|YP_008797578.1| - 0.048 13.1 0.0 0.13 11.7 0.0 1.6 2 0 0 2 2 2 0 Ribosome biogenesis regulatory protein (RRS1) SAP PF02037.22 gi|557694524|ref|YP_008797578.1| - 5.3 6.6 5.8 1.5 8.4 0.1 2.8 3 0 0 3 3 3 0 SAP domain RNA_pol_Rpb1_5 PF04998.12 gi|557694525|ref|YP_008797579.1| - 4.2e-82 275.5 0.3 6.6e-82 274.8 0.2 1.3 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 5 RNA_pol_Rpb1_1 PF04997.7 gi|557694525|ref|YP_008797579.1| - 3.2e-79 266.6 0.3 3.3e-78 263.2 0.0 2.4 2 1 0 2 2 2 1 RNA polymerase Rpb1, domain 1 RNA_pol_Rpb1_2 PF00623.15 gi|557694525|ref|YP_008797579.1| - 1.2e-69 233.4 0.0 5e-69 231.5 0.0 2.1 2 0 0 2 2 2 1 RNA polymerase Rpb1, domain 2 RNA_pol_Rpb1_3 PF04983.13 gi|557694525|ref|YP_008797579.1| - 2.9e-38 131.0 0.0 1.7e-37 128.5 0.0 2.2 2 0 0 2 2 2 1 RNA polymerase Rpb1, domain 3 RNA_pol_Rpb1_4 PF05000.12 gi|557694525|ref|YP_008797579.1| - 2.4e-25 88.3 1.5 9.1e-25 86.5 0.0 2.6 3 0 0 3 3 3 1 RNA polymerase Rpb1, domain 4 DUF35_N PF12172.3 gi|557694525|ref|YP_008797579.1| - 0.12 12.2 6.3 1.6 8.7 0.0 3.4 3 0 0 3 3 3 0 Rubredoxin-like zinc ribbon domain (DUF35_N) DUF4355 PF14265.1 gi|557694525|ref|YP_008797579.1| - 0.19 11.6 2.9 0.93 9.4 0.0 2.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4355) zf-ribbon_3 PF13248.1 gi|557694525|ref|YP_008797579.1| - 0.66 9.2 5.4 0.41 9.9 0.7 2.5 2 1 0 2 2 2 0 zinc-ribbon domain Ribosomal_L7Ae PF01248.21 gi|557694526|ref|YP_008797580.1| - 4.4e-10 38.9 0.0 5e-10 38.7 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family KH_5 PF13184.1 gi|557694527|ref|YP_008797581.1| - 7.9e-11 41.6 3.3 2.9e-10 39.7 0.1 2.5 2 1 1 3 3 3 1 NusA-like KH domain KH_2 PF07650.12 gi|557694527|ref|YP_008797581.1| - 1.2e-07 31.1 3.7 0.00098 18.6 0.3 2.3 1 1 1 2 2 2 2 KH domain KH_4 PF13083.1 gi|557694527|ref|YP_008797581.1| - 0.00012 21.5 0.0 0.00025 20.6 0.0 1.5 1 0 0 1 1 1 1 KH domain KH_1 PF00013.24 gi|557694527|ref|YP_008797581.1| - 0.0025 17.4 4.3 0.19 11.4 0.2 3.2 2 1 1 3 3 3 1 KH domain Ada3 PF10198.4 gi|557694527|ref|YP_008797581.1| - 0.12 12.0 0.0 0.17 11.5 0.0 1.2 1 0 0 1 1 1 0 Histone acetyltransferases subunit 3 DUF4233 PF14017.1 gi|557694528|ref|YP_008797582.1| - 6.9 6.6 15.5 2e+02 1.9 10.8 2.4 1 1 0 1 1 1 0 Protein of unknown function (DUF4233) FKBP_C PF00254.23 gi|557694529|ref|YP_008797583.1| - 4.5e-11 42.6 0.1 1.8e-10 40.6 0.0 2.1 2 1 0 2 2 2 1 FKBP-type peptidyl-prolyl cis-trans isomerase Proteasome PF00227.21 gi|557694530|ref|YP_008797584.1| - 6.6e-52 175.5 0.0 7.5e-52 175.3 0.0 1.0 1 0 0 1 1 1 1 Proteasome subunit Beta-Casp PF10996.3 gi|557694531|ref|YP_008797585.1| - 2.1e-30 105.2 0.0 2.8e-29 101.5 0.0 2.6 3 0 0 3 3 3 1 Beta-Casp domain Lactamase_B PF00753.22 gi|557694531|ref|YP_008797585.1| - 3.5e-22 79.0 0.2 6.9e-22 78.0 0.1 1.5 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily RMMBL PF07521.7 gi|557694531|ref|YP_008797585.1| - 2.3e-14 52.9 0.0 5.7e-14 51.6 0.0 1.8 1 0 0 1 1 1 1 RNA-metabolising metallo-beta-lactamase Lactamase_B_2 PF12706.2 gi|557694531|ref|YP_008797585.1| - 2.2e-08 33.8 0.0 5.4e-08 32.6 0.0 1.7 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.1 gi|557694531|ref|YP_008797585.1| - 0.0009 18.9 0.0 0.0023 17.6 0.0 1.7 1 0 0 1 1 1 1 Beta-lactamase superfamily domain LSM PF01423.17 gi|557694532|ref|YP_008797586.1| - 1.4e-21 75.7 1.4 1.6e-21 75.5 1.0 1.0 1 0 0 1 1 1 1 LSM domain SM-ATX PF14438.1 gi|557694532|ref|YP_008797586.1| - 2.6e-07 30.4 0.1 3e-07 30.2 0.1 1.1 1 0 0 1 1 1 1 Ataxin 2 SM domain HET-s_218-289 PF11558.3 gi|557694532|ref|YP_008797586.1| - 0.074 13.0 0.1 0.13 12.1 0.1 1.4 1 0 0 1 1 1 0 Het-s 218-289 DHC_N1 PF08385.7 gi|557694533|ref|YP_008797587.1| - 0.062 11.6 0.1 0.065 11.5 0.1 1.0 1 0 0 1 1 1 0 Dynein heavy chain, N-terminal region 1 Syntaxin PF00804.20 gi|557694533|ref|YP_008797587.1| - 0.084 13.0 0.7 0.092 12.9 0.5 1.2 1 0 0 1 1 1 0 Syntaxin Tektin PF03148.9 gi|557694533|ref|YP_008797587.1| - 0.089 11.3 1.1 0.1 11.0 0.8 1.2 1 0 0 1 1 1 0 Tektin family Rootletin PF15035.1 gi|557694533|ref|YP_008797587.1| - 0.15 12.0 1.2 0.15 12.0 0.8 1.0 1 0 0 1 1 1 0 Ciliary rootlet component, centrosome cohesion YojJ PF10372.4 gi|557694533|ref|YP_008797587.1| - 0.19 11.5 0.9 0.25 11.2 0.6 1.3 1 0 0 1 1 1 0 Bacterial membrane-spanning protein N-terminus Spc7 PF08317.6 gi|557694533|ref|YP_008797587.1| - 0.21 10.1 2.0 0.24 10.0 1.4 1.1 1 0 0 1 1 1 0 Spc7 kinetochore protein SPT6_acidic PF14632.1 gi|557694533|ref|YP_008797587.1| - 0.34 11.1 3.0 0.38 10.9 2.1 1.2 1 0 0 1 1 1 0 Acidic N-terminal SPT6 PspB PF06667.7 gi|557694533|ref|YP_008797587.1| - 0.35 10.8 2.1 0.52 10.2 1.5 1.4 1 0 0 1 1 1 0 Phage shock protein B zf-C4H2 PF10146.4 gi|557694533|ref|YP_008797587.1| - 0.43 10.5 2.1 0.43 10.5 1.4 1.1 1 0 0 1 1 1 0 Zinc finger-containing protein Latarcin PF10279.4 gi|557694533|ref|YP_008797587.1| - 0.44 10.7 4.8 1.6 8.9 3.4 1.8 1 1 0 1 1 1 0 Latarcin precursor DUF3782 PF12644.2 gi|557694533|ref|YP_008797587.1| - 0.85 9.4 5.1 1.2 8.9 3.5 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF3782) DUF904 PF06005.7 gi|557694533|ref|YP_008797587.1| - 0.88 9.9 4.4 1.3 9.3 3.0 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF904) DivIC PF04977.10 gi|557694533|ref|YP_008797587.1| - 1.3 8.5 6.2 0.55 9.7 2.4 1.6 2 0 0 2 2 2 0 Septum formation initiator Pox_A_type_inc PF04508.7 gi|557694533|ref|YP_008797587.1| - 1.4 8.9 10.3 0.49 10.3 1.8 2.8 3 0 0 3 3 3 0 Viral A-type inclusion protein repeat XhlA PF10779.4 gi|557694533|ref|YP_008797587.1| - 1.6 8.6 4.7 2.4 8.1 3.3 1.3 1 0 0 1 1 1 0 Haemolysin XhlA Plasmid_stabil PF05016.9 gi|557694534|ref|YP_008797588.1| - 3.4e-06 27.3 0.7 4.1e-06 27.1 0.5 1.1 1 0 0 1 1 1 1 Plasmid stabilisation system protein Gp49 PF05973.9 gi|557694534|ref|YP_008797588.1| - 0.0078 16.2 0.1 0.0098 15.8 0.1 1.2 1 0 0 1 1 1 1 Phage derived protein Gp49-like (DUF891) SPOR PF05036.8 gi|557694534|ref|YP_008797588.1| - 0.026 14.7 0.0 0.037 14.1 0.0 1.4 1 1 0 1 1 1 0 Sporulation related domain DUF3014 PF11219.3 gi|557694534|ref|YP_008797588.1| - 0.078 12.8 0.0 0.082 12.7 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3014) Ribosomal_L37e PF01907.14 gi|557694535|ref|YP_008797589.1| - 2.2e-23 81.7 9.9 2.3e-23 81.7 6.9 1.0 1 0 0 1 1 1 1 Ribosomal protein L37e DZR PF12773.2 gi|557694535|ref|YP_008797589.1| - 0.00033 20.4 1.1 0.00038 20.2 0.8 1.1 1 0 0 1 1 1 1 Double zinc ribbon DNA_RNApol_7kD PF03604.8 gi|557694535|ref|YP_008797589.1| - 0.00076 18.9 9.2 0.0011 18.3 1.8 2.2 1 1 1 2 2 2 1 DNA directed RNA polymerase, 7 kDa subunit Zn-ribbon_8 PF09723.5 gi|557694535|ref|YP_008797589.1| - 0.014 15.3 0.1 2.8 7.9 0.1 2.1 2 0 0 2 2 2 0 Zinc ribbon domain zf-ribbon_3 PF13248.1 gi|557694535|ref|YP_008797589.1| - 0.02 14.0 3.7 0.037 13.2 2.5 1.5 1 1 0 1 1 1 0 zinc-ribbon domain HypA PF01155.14 gi|557694535|ref|YP_008797589.1| - 0.022 14.4 0.6 0.024 14.3 0.4 1.1 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family zinc_ribbon_6 PF14599.1 gi|557694535|ref|YP_008797589.1| - 0.036 13.8 1.0 0.047 13.4 0.7 1.2 1 0 0 1 1 1 0 Zinc-ribbon ArfGap PF01412.13 gi|557694535|ref|YP_008797589.1| - 0.069 12.9 1.1 0.069 12.9 0.8 1.6 1 1 1 2 2 2 0 Putative GTPase activating protein for Arf UPF0547 PF10571.4 gi|557694535|ref|YP_008797589.1| - 0.09 12.4 7.3 0.72 9.5 0.3 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 ProRS-C_1 PF09180.6 gi|557694535|ref|YP_008797589.1| - 0.21 11.5 1.2 0.33 10.9 0.9 1.5 1 1 0 1 1 1 0 Prolyl-tRNA synthetase, C-terminal zf-RING_5 PF14634.1 gi|557694535|ref|YP_008797589.1| - 0.41 10.3 4.7 0.55 10.0 3.3 1.1 1 0 0 1 1 1 0 zinc-RING finger domain zinc_ribbon_2 PF13240.1 gi|557694535|ref|YP_008797589.1| - 0.45 10.0 6.3 5.2 6.6 4.3 2.1 1 1 1 2 2 2 0 zinc-ribbon domain RNA_POL_M_15KD PF02150.11 gi|557694535|ref|YP_008797589.1| - 0.5 10.0 2.7 5 6.8 0.2 2.2 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit zf-C3HC4_2 PF13923.1 gi|557694535|ref|YP_008797589.1| - 0.75 9.8 5.9 1 9.4 4.1 1.2 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) DUF35_N PF12172.3 gi|557694535|ref|YP_008797589.1| - 1 9.3 5.9 1.3 9.0 4.1 1.2 1 0 0 1 1 1 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zinc_ribbon_4 PF13717.1 gi|557694535|ref|YP_008797589.1| - 1.6 8.5 5.4 1.3 8.7 0.5 2.1 2 0 0 2 2 2 0 zinc-ribbon domain PyrI_C PF02748.10 gi|557694535|ref|YP_008797589.1| - 2 7.9 5.3 4.2 6.8 0.8 2.0 1 1 1 2 2 2 0 Aspartate carbamoyltransferase regulatory chain, metal binding domain ZF-HD_dimer PF04770.7 gi|557694535|ref|YP_008797589.1| - 2 8.5 8.0 0.62 10.1 3.5 1.6 1 1 1 2 2 2 0 ZF-HD protein dimerisation region zinc_ribbon_5 PF13719.1 gi|557694535|ref|YP_008797589.1| - 9 5.9 7.7 3.1 7.4 1.3 2.1 1 1 1 2 2 2 0 zinc-ribbon domain Acyltransferase PF01553.16 gi|557694536|ref|YP_008797590.1| - 0.13 11.6 0.0 2.7 7.4 0.0 2.1 2 0 0 2 2 2 0 Acyltransferase Glyco_tranf_2_3 PF13641.1 gi|557694537|ref|YP_008797591.1| - 1.2e-39 136.4 0.0 1.7e-39 135.9 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.1 gi|557694537|ref|YP_008797591.1| - 2.3e-24 86.1 2.3 2.3e-24 86.1 1.6 2.4 3 0 0 3 3 3 1 Glycosyl transferase family group 2 Glycos_transf_2 PF00535.21 gi|557694537|ref|YP_008797591.1| - 4.8e-22 78.4 0.0 7.7e-22 77.7 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_transf_21 PF13506.1 gi|557694537|ref|YP_008797591.1| - 1.2e-12 47.4 0.0 2.1e-12 46.6 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 21 Cellulose_synt PF03552.9 gi|557694537|ref|YP_008797591.1| - 1.2e-05 23.8 2.9 6.8e-05 21.3 0.4 2.1 2 0 0 2 2 2 1 Cellulose synthase Glyco_tranf_2_2 PF10111.4 gi|557694537|ref|YP_008797591.1| - 3.8e-05 22.9 0.0 6.9e-05 22.0 0.0 1.4 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.1 gi|557694537|ref|YP_008797591.1| - 0.0018 18.5 0.0 0.0049 17.1 0.0 1.7 1 0 0 1 1 1 1 Glycosyl transferase family 2 Tweety PF04906.8 gi|557694537|ref|YP_008797591.1| - 0.31 9.4 6.2 0.051 11.9 0.4 2.2 3 0 0 3 3 3 0 Tweety Radical_SAM PF04055.16 gi|557694539|ref|YP_008797593.1| - 1.2e-26 93.8 0.9 2.4e-26 92.8 0.4 1.6 2 0 0 2 2 2 1 Radical SAM superfamily B12-binding PF02310.14 gi|557694539|ref|YP_008797593.1| - 9.9e-19 67.3 0.0 7.4e-18 64.5 0.0 2.1 2 0 0 2 2 2 1 B12 binding domain DoxX PF07681.7 gi|557694540|ref|YP_008797594.1| - 0.0033 17.8 3.5 0.0033 17.8 2.4 3.2 1 1 2 3 3 3 2 DoxX Pox_A9 PF04835.7 gi|557694541|ref|YP_008797595.1| - 4 7.4 8.6 0.079 12.8 0.9 1.9 2 0 0 2 2 2 0 A9 protein conserved region DUF2964 PF11177.3 gi|557694542|ref|YP_008797596.1| - 0.16 11.8 7.4 0.43 10.5 1.3 2.9 2 1 1 3 3 3 0 Protein of unknown function (DUF2964) DUF3754 PF12576.3 gi|557694542|ref|YP_008797596.1| - 0.16 11.5 1.9 0.32 10.6 1.3 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3754) IGPD PF00475.13 gi|557694543|ref|YP_008797597.1| - 5.4e-52 175.5 2.1 7.6e-52 175.0 1.5 1.2 1 0 0 1 1 1 1 Imidazoleglycerol-phosphate dehydratase Fae PF08714.6 gi|557694543|ref|YP_008797597.1| - 0.025 14.2 0.2 0.17 11.5 0.1 2.1 1 1 1 2 2 2 0 Formaldehyde-activating enzyme (Fae) HisG PF01634.13 gi|557694544|ref|YP_008797598.1| - 6.9e-36 123.2 0.0 9.9e-36 122.7 0.0 1.2 1 0 0 1 1 1 1 ATP phosphoribosyltransferase HisG_C PF08029.6 gi|557694544|ref|YP_008797598.1| - 2.7e-16 59.2 0.0 7.4e-16 57.8 0.0 1.7 1 0 0 1 1 1 1 HisG, C-terminal domain GATase PF00117.23 gi|557694545|ref|YP_008797599.1| - 2e-28 99.1 0.0 2.2e-28 99.0 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I GATase_3 PF07685.9 gi|557694545|ref|YP_008797599.1| - 2.4e-06 27.2 0.0 3.7e-06 26.6 0.0 1.3 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain Peptidase_C26 PF07722.8 gi|557694545|ref|YP_008797599.1| - 0.0011 18.4 2.2 0.037 13.4 0.1 2.8 2 2 1 3 3 3 2 Peptidase C26 PRA-CH PF01502.13 gi|557694546|ref|YP_008797600.1| - 1e-36 124.3 0.0 1.3e-36 124.0 0.0 1.1 1 0 0 1 1 1 1 Phosphoribosyl-AMP cyclohydrolase DUF98 PF01947.11 gi|557694546|ref|YP_008797600.1| - 0.051 13.3 0.0 0.065 12.9 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF98) His_biosynth PF00977.16 gi|557694547|ref|YP_008797601.1| - 5.6e-87 290.7 1.0 6.3e-87 290.6 0.7 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein ThiG PF05690.9 gi|557694547|ref|YP_008797601.1| - 1.1e-08 34.5 3.8 0.00055 19.0 0.3 2.2 1 1 1 2 2 2 2 Thiazole biosynthesis protein ThiG NMO PF03060.10 gi|557694547|ref|YP_008797601.1| - 6.9e-08 32.0 2.1 0.0012 18.0 0.4 2.2 2 0 0 2 2 2 2 Nitronate monooxygenase Dus PF01207.12 gi|557694547|ref|YP_008797601.1| - 1.4e-07 30.6 0.1 0.0036 16.1 0.1 2.2 2 0 0 2 2 2 2 Dihydrouridine synthase (Dus) PcrB PF01884.12 gi|557694547|ref|YP_008797601.1| - 2.3e-06 27.0 0.7 0.00018 20.8 0.1 2.2 2 0 0 2 2 2 1 PcrB family DHO_dh PF01180.16 gi|557694547|ref|YP_008797601.1| - 6.9e-06 25.2 0.1 0.0014 17.6 0.0 2.1 2 0 0 2 2 2 2 Dihydroorotate dehydrogenase TMP-TENI PF02581.12 gi|557694547|ref|YP_008797601.1| - 1.3e-05 24.4 0.5 0.08 12.0 0.0 2.3 2 0 0 2 2 2 2 Thiamine monophosphate synthase/TENI Oxidored_FMN PF00724.15 gi|557694547|ref|YP_008797601.1| - 0.032 13.2 0.0 0.48 9.3 0.0 2.0 2 0 0 2 2 2 0 NADH:flavin oxidoreductase / NADH oxidase family IMPDH PF00478.20 gi|557694547|ref|YP_008797601.1| - 0.037 12.9 3.7 1.2 7.9 0.2 2.1 2 0 0 2 2 2 0 IMP dehydrogenase / GMP reductase domain FMN_dh PF01070.13 gi|557694547|ref|YP_008797601.1| - 0.044 12.6 4.8 1 8.1 0.4 2.3 2 1 0 2 2 2 0 FMN-dependent dehydrogenase Kelch_5 PF13854.1 gi|557694547|ref|YP_008797601.1| - 0.061 13.2 0.1 0.16 11.9 0.1 1.7 1 0 0 1 1 1 0 Kelch motif NanE PF04131.9 gi|557694547|ref|YP_008797601.1| - 0.068 12.1 0.4 5.2 6.0 0.1 2.3 2 0 0 2 2 2 0 Putative N-acetylmannosamine-6-phosphate epimerase Trp_syntA PF00290.15 gi|557694547|ref|YP_008797601.1| - 0.074 11.5 1.2 0.13 10.7 0.2 1.7 2 0 0 2 2 2 0 Tryptophan synthase alpha chain G3P_antiterm PF04309.7 gi|557694547|ref|YP_008797601.1| - 0.076 12.0 0.4 0.19 10.7 0.1 1.7 2 0 0 2 2 2 0 Glycerol-3-phosphate responsive antiterminator PEP_mutase PF13714.1 gi|557694547|ref|YP_008797601.1| - 0.44 9.7 4.2 3 7.0 0.3 3.2 2 2 1 4 4 4 0 Phosphoenolpyruvate phosphomutase His_biosynth PF00977.16 gi|557694548|ref|YP_008797602.1| - 3e-52 177.1 0.3 3.3e-52 177.0 0.2 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein CDP-OH_P_transf PF01066.16 gi|557694548|ref|YP_008797602.1| - 0.0048 17.1 0.5 0.012 15.8 0.2 1.7 1 1 0 1 1 1 1 CDP-alcohol phosphatidyltransferase PcrB PF01884.12 gi|557694548|ref|YP_008797602.1| - 0.13 11.4 0.9 8.5 5.5 0.0 2.3 2 1 0 2 2 2 0 PcrB family Uso1_p115_C PF04871.8 gi|557694550|ref|YP_008797604.1| - 0.028 14.3 2.3 0.061 13.2 1.6 1.6 1 0 0 1 1 1 0 Uso1 / p115 like vesicle tethering protein, C terminal region Polyoma_coat PF00718.15 gi|557694550|ref|YP_008797604.1| - 0.058 12.2 0.0 0.099 11.5 0.0 1.3 1 0 0 1 1 1 0 Polyomavirus coat protein DUF4392 PF14336.1 gi|557694551|ref|YP_008797605.1| - 4.2e-54 183.3 0.2 5.2e-54 183.0 0.1 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4392) KaiC PF06745.8 gi|557694552|ref|YP_008797606.1| - 7.2e-56 188.8 0.0 9e-56 188.5 0.0 1.0 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.1 gi|557694552|ref|YP_008797606.1| - 3.1e-10 39.7 0.0 4.4e-10 39.2 0.0 1.2 1 0 0 1 1 1 1 AAA domain RecA PF00154.16 gi|557694552|ref|YP_008797606.1| - 0.00012 21.2 0.0 0.00029 19.9 0.0 1.6 2 0 0 2 2 2 1 recA bacterial DNA recombination protein PAXNEB PF05625.6 gi|557694552|ref|YP_008797606.1| - 0.00048 19.0 0.1 0.00081 18.3 0.1 1.3 1 0 0 1 1 1 1 PAXNEB protein ATP-synt_ab PF00006.20 gi|557694552|ref|YP_008797606.1| - 0.0005 19.6 0.0 0.00079 18.9 0.0 1.3 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain GvpD PF07088.6 gi|557694552|ref|YP_008797606.1| - 0.0013 17.1 0.6 0.45 8.7 0.1 2.1 2 0 0 2 2 2 2 GvpD gas vesicle protein T2SE PF00437.15 gi|557694552|ref|YP_008797606.1| - 0.0029 16.5 0.0 0.0045 15.9 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_22 PF13401.1 gi|557694552|ref|YP_008797606.1| - 0.0046 17.0 0.1 0.012 15.7 0.1 1.8 1 1 0 1 1 1 1 AAA domain AAA_14 PF13173.1 gi|557694552|ref|YP_008797606.1| - 0.0084 16.0 0.1 0.04 13.8 0.0 2.1 2 1 0 2 2 2 1 AAA domain DEAD PF00270.24 gi|557694552|ref|YP_008797606.1| - 0.0098 15.3 0.0 0.014 14.9 0.0 1.3 1 0 0 1 1 1 1 DEAD/DEAH box helicase MEDS PF14417.1 gi|557694552|ref|YP_008797606.1| - 0.011 14.8 0.0 0.017 14.1 0.0 1.2 1 0 0 1 1 1 0 MEDS: MEthanogen/methylotroph, DcmR Sensory domain Rad51 PF08423.6 gi|557694552|ref|YP_008797606.1| - 0.014 14.2 0.1 0.072 11.9 0.0 1.9 2 0 0 2 2 2 0 Rad51 AAA_16 PF13191.1 gi|557694552|ref|YP_008797606.1| - 0.06 13.3 0.1 0.47 10.4 0.1 2.1 2 1 0 2 2 2 0 AAA ATPase domain AAA_10 PF12846.2 gi|557694552|ref|YP_008797606.1| - 0.068 12.5 0.1 0.18 11.2 0.0 1.7 2 1 0 2 2 2 0 AAA-like domain IstB_IS21 PF01695.12 gi|557694552|ref|YP_008797606.1| - 0.099 12.0 0.0 0.16 11.3 0.0 1.3 1 0 0 1 1 1 0 IstB-like ATP binding protein DUF2075 PF09848.4 gi|557694552|ref|YP_008797606.1| - 0.11 11.4 0.1 0.16 10.9 0.1 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) DAP3 PF10236.4 gi|557694552|ref|YP_008797606.1| - 0.12 11.3 0.0 0.22 10.4 0.0 1.3 1 0 0 1 1 1 0 Mitochondrial ribosomal death-associated protein 3 Zot PF05707.7 gi|557694552|ref|YP_008797606.1| - 0.15 11.5 0.0 0.2 11.0 0.0 1.3 1 0 0 1 1 1 0 Zonular occludens toxin (Zot) PolC_DP2 PF03833.8 gi|557694553|ref|YP_008797607.1| - 2.2e-270 899.2 0.8 6e-268 891.1 0.0 2.7 2 1 0 2 2 2 1 DNA polymerase II large subunit DP2 HNH_5 PF14279.1 gi|557694553|ref|YP_008797607.1| - 0.021 14.8 5.9 2.1 8.3 0.0 3.5 3 0 0 3 3 3 0 HNH endonuclease FlgN PF05130.7 gi|557694553|ref|YP_008797607.1| - 0.028 14.6 0.0 0.081 13.1 0.0 1.7 1 0 0 1 1 1 0 FlgN protein zf-DNA_Pol PF08996.5 gi|557694553|ref|YP_008797607.1| - 0.078 12.3 4.4 1.1 8.6 1.1 2.6 2 0 0 2 2 2 0 DNA Polymerase alpha zinc finger Mu-like_Com PF10122.4 gi|557694553|ref|YP_008797607.1| - 0.42 9.7 7.2 0.043 12.8 0.7 2.4 2 0 0 2 2 2 0 Mu-like prophage protein Com zinc-ribbons_6 PF07191.7 gi|557694553|ref|YP_008797607.1| - 0.67 9.7 11.4 1 9.1 0.2 2.5 2 0 0 2 2 2 0 zinc-ribbons DZR PF12773.2 gi|557694553|ref|YP_008797607.1| - 2.3 8.1 20.3 6.7 6.6 0.8 2.8 2 1 0 2 2 2 0 Double zinc ribbon HTH_5 PF01022.15 gi|557694554|ref|YP_008797608.1| - 1e-07 31.5 0.5 1.4e-07 31.0 0.4 1.2 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.1 gi|557694554|ref|YP_008797608.1| - 2.5e-05 23.5 0.1 3.5e-05 23.1 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding FaeA PF04703.7 gi|557694554|ref|YP_008797608.1| - 5.4e-05 23.2 0.1 0.00019 21.5 0.0 1.8 1 1 1 2 2 2 1 FaeA-like protein HTH_20 PF12840.2 gi|557694554|ref|YP_008797608.1| - 5.9e-05 22.7 0.5 8.1e-05 22.3 0.3 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain Rrf2 PF02082.15 gi|557694554|ref|YP_008797608.1| - 0.0009 19.3 0.1 0.001 19.1 0.1 1.2 1 0 0 1 1 1 1 Transcriptional regulator TrmB PF01978.14 gi|557694554|ref|YP_008797608.1| - 0.0019 17.8 0.0 0.0031 17.1 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB TFIIE_alpha PF02002.12 gi|557694554|ref|YP_008797608.1| - 0.0023 17.3 0.0 0.0027 17.1 0.0 1.1 1 0 0 1 1 1 1 TFIIE alpha subunit HTH_IclR PF09339.5 gi|557694554|ref|YP_008797608.1| - 0.0056 16.2 0.0 0.0081 15.7 0.0 1.2 1 0 0 1 1 1 1 IclR helix-turn-helix domain Sigma70_r4_2 PF08281.7 gi|557694554|ref|YP_008797608.1| - 0.026 13.9 0.1 0.043 13.2 0.0 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_29 PF13551.1 gi|557694554|ref|YP_008797608.1| - 0.034 14.3 0.3 0.041 14.0 0.2 1.2 1 0 0 1 1 1 0 Winged helix-turn helix Sulfolobus_pRN PF05584.6 gi|557694554|ref|YP_008797608.1| - 0.041 13.8 0.3 0.051 13.5 0.2 1.1 1 0 0 1 1 1 0 Sulfolobus plasmid regulatory protein CENP-B_N PF04218.8 gi|557694554|ref|YP_008797608.1| - 0.052 12.9 0.1 0.08 12.3 0.0 1.4 1 0 0 1 1 1 0 CENP-B N-terminal DNA-binding domain HTH_9 PF08221.6 gi|557694554|ref|YP_008797608.1| - 0.069 13.0 0.3 0.11 12.4 0.0 1.5 2 0 0 2 2 2 0 RNA polymerase III subunit RPC82 helix-turn-helix domain MerR_1 PF13411.1 gi|557694554|ref|YP_008797608.1| - 0.072 12.8 0.1 0.12 12.2 0.1 1.4 1 0 0 1 1 1 0 MerR HTH family regulatory protein Sec61_beta PF03911.11 gi|557694555|ref|YP_008797609.1| - 9.5e-15 54.1 0.1 1.1e-14 53.9 0.1 1.1 1 0 0 1 1 1 1 Sec61beta family Lactamase_B_2 PF12706.2 gi|557694556|ref|YP_008797610.1| - 8.1e-07 28.7 0.2 7.8e-06 25.5 0.2 2.4 2 2 1 3 3 3 1 Beta-lactamase superfamily domain RMMBL PF07521.7 gi|557694556|ref|YP_008797610.1| - 8.6e-06 25.4 0.0 3.6e-05 23.4 0.0 2.1 2 0 0 2 2 2 1 RNA-metabolising metallo-beta-lactamase Lactamase_B PF00753.22 gi|557694556|ref|YP_008797610.1| - 0.0058 16.3 1.4 0.029 14.0 1.1 1.9 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily DUF2070 PF09843.4 gi|557694557|ref|YP_008797611.1| - 3.8e-30 104.6 0.1 6.1e-30 104.0 0.0 1.3 1 0 0 1 1 1 1 Predicted membrane protein (DUF2070) F420_oxidored PF03807.12 gi|557694557|ref|YP_008797611.1| - 0.08 13.3 0.0 0.37 11.2 0.0 2.2 1 1 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent ASFV_L11L PF05293.6 gi|557694557|ref|YP_008797611.1| - 0.22 11.6 3.2 0.55 10.3 0.3 2.9 3 0 0 3 3 3 0 African swine fever virus (ASFV) L11L protein PqqD PF05402.7 gi|557694558|ref|YP_008797612.1| - 4.1e-09 36.3 0.6 5.4e-09 35.9 0.4 1.1 1 0 0 1 1 1 1 Coenzyme PQQ synthesis protein D (PqqD) DUF479 PF04336.7 gi|557694558|ref|YP_008797612.1| - 0.12 12.4 0.0 0.18 11.9 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF479 Alba PF01918.16 gi|557694559|ref|YP_008797613.1| - 2.1e-07 30.4 0.4 3e-07 29.9 0.0 1.4 2 0 0 2 2 2 1 Alba Acyl-CoA_dh_1 PF00441.19 gi|557694560|ref|YP_008797614.1| - 1.8e-34 119.0 1.9 2.8e-34 118.3 1.3 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.11 gi|557694560|ref|YP_008797614.1| - 5.1e-27 94.6 0.1 1.3e-26 93.3 0.1 1.7 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_2 PF08028.6 gi|557694560|ref|YP_008797614.1| - 8.6e-15 55.1 0.4 8.6e-15 55.1 0.3 1.6 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_M PF02770.14 gi|557694560|ref|YP_008797614.1| - 1.8e-10 40.1 0.0 3.3e-10 39.3 0.0 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain NAD_synthase PF02540.12 gi|557694561|ref|YP_008797615.1| - 2.8e-73 245.8 0.0 3.3e-73 245.5 0.0 1.0 1 0 0 1 1 1 1 NAD synthase tRNA_Me_trans PF03054.11 gi|557694561|ref|YP_008797615.1| - 7.4e-07 28.0 0.0 8.1e-05 21.3 0.0 2.3 2 0 0 2 2 2 2 tRNA methyl transferase Asn_synthase PF00733.16 gi|557694561|ref|YP_008797615.1| - 2.3e-05 24.0 0.0 3.1e-05 23.5 0.0 1.2 1 0 0 1 1 1 1 Asparagine synthase QueC PF06508.8 gi|557694561|ref|YP_008797615.1| - 0.043 13.1 0.0 0.079 12.2 0.0 1.4 2 0 0 2 2 2 0 Queuosine biosynthesis protein QueC IncA PF04156.9 gi|557694562|ref|YP_008797616.1| - 2.1e-07 30.7 34.7 5.7e-05 22.7 8.3 3.0 1 1 2 3 3 3 2 IncA protein GAS PF13851.1 gi|557694562|ref|YP_008797616.1| - 2e-06 27.1 28.8 8e-06 25.1 9.3 2.1 1 1 1 2 2 2 2 Growth-arrest specific micro-tubule binding Tropomyosin_1 PF12718.2 gi|557694562|ref|YP_008797616.1| - 6.2e-06 26.1 11.8 6.2e-06 26.1 8.2 2.0 1 1 0 2 2 2 1 Tropomyosin like DivIC PF04977.10 gi|557694562|ref|YP_008797616.1| - 2.7e-05 23.5 22.0 0.018 14.4 1.7 4.5 1 1 2 4 4 4 2 Septum formation initiator APG6 PF04111.7 gi|557694562|ref|YP_008797616.1| - 3.7e-05 22.9 19.3 5.3e-05 22.4 7.4 2.1 1 1 1 2 2 2 1 Autophagy protein Apg6 Spectrin PF00435.16 gi|557694562|ref|YP_008797616.1| - 4.1e-05 23.8 13.7 0.0024 18.1 1.1 2.6 1 1 1 2 2 2 2 Spectrin repeat BicD PF09730.4 gi|557694562|ref|YP_008797616.1| - 4.5e-05 22.0 10.9 5.7e-05 21.6 7.6 1.0 1 0 0 1 1 1 1 Microtubule-associated protein Bicaudal-D ATG16 PF08614.6 gi|557694562|ref|YP_008797616.1| - 4.6e-05 23.3 21.3 0.00021 21.1 9.5 2.1 1 1 1 2 2 2 1 Autophagy protein 16 (ATG16) AAA_13 PF13166.1 gi|557694562|ref|YP_008797616.1| - 4.6e-05 22.0 6.3 7.6e-05 21.3 4.3 1.3 1 0 0 1 1 1 1 AAA domain TBPIP PF07106.8 gi|557694562|ref|YP_008797616.1| - 0.00013 21.5 15.3 0.0013 18.3 5.5 2.3 1 1 1 2 2 2 1 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) EzrA PF06160.7 gi|557694562|ref|YP_008797616.1| - 0.00014 20.1 15.7 0.00021 19.6 10.9 1.2 1 0 0 1 1 1 1 Septation ring formation regulator, EzrA DUF904 PF06005.7 gi|557694562|ref|YP_008797616.1| - 0.00017 21.8 1.0 0.00017 21.8 0.7 3.4 1 1 2 3 3 3 1 Protein of unknown function (DUF904) DUF948 PF06103.6 gi|557694562|ref|YP_008797616.1| - 0.00018 21.3 1.8 0.00018 21.3 1.3 3.3 3 0 0 3 3 3 1 Bacterial protein of unknown function (DUF948) TPR_MLP1_2 PF07926.7 gi|557694562|ref|YP_008797616.1| - 0.00019 21.2 20.7 0.0053 16.5 7.9 2.5 1 1 1 2 2 2 2 TPR/MLP1/MLP2-like protein DUF4201 PF13870.1 gi|557694562|ref|YP_008797616.1| - 0.00022 20.7 13.6 0.00022 20.7 9.4 2.1 1 1 1 2 2 2 1 Domain of unknown function (DUF4201) CENP-F_leu_zip PF10473.4 gi|557694562|ref|YP_008797616.1| - 0.00023 21.0 17.5 0.046 13.5 5.1 2.9 1 1 0 2 2 2 2 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 ADIP PF11559.3 gi|557694562|ref|YP_008797616.1| - 0.00038 20.3 22.1 0.017 15.0 7.3 2.4 1 1 1 2 2 2 2 Afadin- and alpha -actinin-Binding WEMBL PF05701.6 gi|557694562|ref|YP_008797616.1| - 0.00044 18.8 10.4 0.00066 18.2 7.2 1.2 1 0 0 1 1 1 1 Weak chloroplast movement under blue light PspA_IM30 PF04012.7 gi|557694562|ref|YP_008797616.1| - 0.00069 19.0 15.3 0.026 13.8 3.4 2.1 1 1 1 2 2 2 2 PspA/IM30 family Spc7 PF08317.6 gi|557694562|ref|YP_008797616.1| - 0.00073 18.3 16.2 0.021 13.5 0.9 2.2 1 1 1 2 2 2 2 Spc7 kinetochore protein DUF4254 PF14063.1 gi|557694562|ref|YP_008797616.1| - 0.00096 18.7 6.2 0.00096 18.7 4.3 1.8 2 0 0 2 2 1 1 Protein of unknown function (DUF4254) Reo_sigmaC PF04582.7 gi|557694562|ref|YP_008797616.1| - 0.0017 17.6 4.7 0.078 12.1 0.8 2.1 1 1 1 2 2 2 2 Reovirus sigma C capsid protein Bacillus_HBL PF05791.6 gi|557694562|ref|YP_008797616.1| - 0.0017 17.7 9.8 0.0024 17.2 2.3 2.2 2 0 0 2 2 2 1 Bacillus haemolytic enterotoxin (HBL) DUF869 PF05911.6 gi|557694562|ref|YP_008797616.1| - 0.0017 16.6 5.4 0.0017 16.6 3.7 1.6 1 1 0 1 1 1 1 Plant protein of unknown function (DUF869) DUF812 PF05667.6 gi|557694562|ref|YP_008797616.1| - 0.0019 16.8 10.8 0.0025 16.3 7.5 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF812) DUF2353 PF09789.4 gi|557694562|ref|YP_008797616.1| - 0.0024 17.1 12.8 0.13 11.4 3.0 2.1 1 1 1 2 2 2 2 Uncharacterized coiled-coil protein (DUF2353) Ead_Ea22 PF13935.1 gi|557694562|ref|YP_008797616.1| - 0.0029 17.9 3.7 0.005 17.1 0.2 2.2 2 0 0 2 2 2 1 Ead/Ea22-like protein TMF_DNA_bd PF12329.3 gi|557694562|ref|YP_008797616.1| - 0.0032 17.2 17.1 0.088 12.6 5.3 3.5 1 1 2 3 3 3 2 TATA element modulatory factor 1 DNA binding Fib_alpha PF08702.5 gi|557694562|ref|YP_008797616.1| - 0.0037 17.4 16.9 0.19 11.8 2.7 2.3 1 1 1 2 2 2 2 Fibrinogen alpha/beta chain family Tropomyosin PF00261.15 gi|557694562|ref|YP_008797616.1| - 0.0037 16.3 13.1 0.014 14.5 4.8 2.5 1 1 1 2 2 2 1 Tropomyosin Filament PF00038.16 gi|557694562|ref|YP_008797616.1| - 0.0041 16.6 21.3 0.027 13.9 6.8 2.5 1 1 1 2 2 2 1 Intermediate filament protein Prefoldin_2 PF01920.15 gi|557694562|ref|YP_008797616.1| - 0.0041 16.8 20.1 0.39 10.4 0.6 4.2 1 1 4 5 5 5 2 Prefoldin subunit AAA_27 PF13514.1 gi|557694562|ref|YP_008797616.1| - 0.0042 14.8 15.2 0.014 13.1 10.5 1.7 1 1 0 1 1 1 1 AAA domain Laminin_I PF06008.9 gi|557694562|ref|YP_008797616.1| - 0.0047 16.2 19.4 0.011 15.0 13.5 1.5 1 1 0 1 1 1 1 Laminin Domain I Nup54 PF13874.1 gi|557694562|ref|YP_008797616.1| - 0.0049 16.5 6.3 0.0049 16.5 4.3 3.0 1 1 2 3 3 3 1 Nucleoporin complex subunit 54 DUF3584 PF12128.3 gi|557694562|ref|YP_008797616.1| - 0.007 13.7 13.7 0.0092 13.3 9.5 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3584) BLOC1_2 PF10046.4 gi|557694562|ref|YP_008797616.1| - 0.0071 16.4 16.5 0.094 12.8 1.8 3.4 1 1 2 3 3 3 2 Biogenesis of lysosome-related organelles complex-1 subunit 2 Spore_III_AB PF09548.5 gi|557694562|ref|YP_008797616.1| - 0.0085 15.8 11.8 0.011 15.5 6.1 2.1 1 1 1 2 2 1 1 Stage III sporulation protein AB (spore_III_AB) DUF724 PF05266.9 gi|557694562|ref|YP_008797616.1| - 0.011 15.3 9.2 0.015 14.8 5.8 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF724) Atg14 PF10186.4 gi|557694562|ref|YP_008797616.1| - 0.012 14.6 19.4 0.055 12.4 6.5 2.2 1 1 1 2 2 2 0 UV radiation resistance protein and autophagy-related subunit 14 Cast PF10174.4 gi|557694562|ref|YP_008797616.1| - 0.014 13.5 18.1 0.027 12.5 12.6 1.4 1 1 0 1 1 1 0 RIM-binding protein of the cytomatrix active zone CENP-Q PF13094.1 gi|557694562|ref|YP_008797616.1| - 0.017 15.1 25.3 0.1 12.5 8.1 2.8 1 1 1 2 2 2 0 CENP-Q, a CENPA-CAD centromere complex subunit DUF3450 PF11932.3 gi|557694562|ref|YP_008797616.1| - 0.018 14.3 19.1 0.18 11.0 6.5 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF3450) FH2 PF02181.18 gi|557694562|ref|YP_008797616.1| - 0.019 13.8 5.7 0.12 11.2 1.0 2.1 1 1 1 2 2 2 0 Formin Homology 2 Domain CALCOCO1 PF07888.6 gi|557694562|ref|YP_008797616.1| - 0.02 13.2 15.1 0.04 12.2 10.4 1.5 1 1 0 1 1 1 0 Calcium binding and coiled-coil domain (CALCOCO1) like PhoU_div PF01865.11 gi|557694562|ref|YP_008797616.1| - 0.031 13.4 0.6 4.3 6.4 0.2 2.3 2 0 0 2 2 2 0 Protein of unknown function DUF47 HALZ PF02183.13 gi|557694562|ref|YP_008797616.1| - 0.032 13.9 11.7 0.18 11.5 1.3 3.9 2 1 2 4 4 4 0 Homeobox associated leucine zipper DUF342 PF03961.8 gi|557694562|ref|YP_008797616.1| - 0.035 12.5 14.3 0.087 11.2 4.8 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF342) Perilipin PF03036.11 gi|557694562|ref|YP_008797616.1| - 0.039 12.7 10.9 0.058 12.2 7.6 1.1 1 0 0 1 1 1 0 Perilipin family DUF972 PF06156.8 gi|557694562|ref|YP_008797616.1| - 0.045 14.1 16.8 1.4 9.3 5.0 3.2 1 1 2 3 3 3 0 Protein of unknown function (DUF972) Cep57_MT_bd PF06657.8 gi|557694562|ref|YP_008797616.1| - 0.051 13.5 15.8 0.052 13.4 2.2 3.9 1 1 3 4 4 4 0 Centrosome microtubule-binding domain of Cep57 bZIP_1 PF00170.16 gi|557694562|ref|YP_008797616.1| - 0.051 13.5 16.3 1.4 8.8 0.7 4.0 2 1 3 5 5 4 0 bZIP transcription factor Mnd1 PF03962.10 gi|557694562|ref|YP_008797616.1| - 0.06 13.0 14.7 0.11 12.1 5.0 2.5 1 1 2 3 3 3 0 Mnd1 family DUF4041 PF13250.1 gi|557694562|ref|YP_008797616.1| - 0.063 12.8 1.7 2 8.0 0.0 3.5 3 1 1 4 4 4 0 Domain of unknown function (DUF4041) Mod_r PF07200.8 gi|557694562|ref|YP_008797616.1| - 0.072 13.0 16.0 0.77 9.6 4.1 2.5 1 1 1 2 2 2 0 Modifier of rudimentary (Mod(r)) protein Sec8_exocyst PF04048.9 gi|557694562|ref|YP_008797616.1| - 0.075 12.6 11.4 0.15 11.6 1.2 2.5 1 1 1 2 2 2 0 Sec8 exocyst complex component specific domain LOH1CR12 PF10158.4 gi|557694562|ref|YP_008797616.1| - 0.076 12.8 6.2 0.13 12.1 2.0 2.4 1 1 1 2 2 2 0 Tumour suppressor protein Syntaxin_2 PF14523.1 gi|557694562|ref|YP_008797616.1| - 0.08 12.9 13.1 0.56 10.2 8.2 2.4 1 1 0 1 1 1 0 Syntaxin-like protein Myosin_tail_1 PF01576.14 gi|557694562|ref|YP_008797616.1| - 0.098 10.3 17.5 0.23 9.1 5.4 2.0 1 1 0 1 1 1 0 Myosin tail Vps5 PF09325.5 gi|557694562|ref|YP_008797616.1| - 0.12 11.6 12.6 0.16 11.1 1.0 2.4 1 1 1 2 2 2 0 Vps5 C terminal like IFT57 PF10498.4 gi|557694562|ref|YP_008797616.1| - 0.14 10.9 17.5 1.1 7.9 4.8 2.2 1 1 1 2 2 2 0 Intra-flagellar transport protein 57 DUF2730 PF10805.3 gi|557694562|ref|YP_008797616.1| - 0.14 11.9 7.7 0.52 10.0 3.2 3.0 1 1 2 3 3 3 0 Protein of unknown function (DUF2730) FUSC PF04632.7 gi|557694562|ref|YP_008797616.1| - 0.15 10.4 9.0 0.21 9.9 6.2 1.2 1 0 0 1 1 1 0 Fusaric acid resistance protein family V_ATPase_I PF01496.14 gi|557694562|ref|YP_008797616.1| - 0.16 9.7 9.3 0.33 8.7 6.4 1.5 1 1 0 1 1 1 0 V-type ATPase 116kDa subunit family Baculo_PEP_C PF04513.7 gi|557694562|ref|YP_008797616.1| - 0.18 11.6 14.5 0.52 10.1 6.2 2.3 1 1 1 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus UPF0242 PF06785.6 gi|557694562|ref|YP_008797616.1| - 0.18 10.4 10.3 0.32 9.6 7.2 1.4 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0242) DivIVA PF05103.8 gi|557694562|ref|YP_008797616.1| - 0.18 11.8 16.7 2.7 8.0 0.3 3.0 1 1 2 3 3 3 0 DivIVA protein Peripla_BP_2 PF01497.13 gi|557694562|ref|YP_008797616.1| - 0.19 10.8 1.0 0.3 10.1 0.7 1.3 1 0 0 1 1 1 0 Periplasmic binding protein TMF_TATA_bd PF12325.3 gi|557694562|ref|YP_008797616.1| - 0.19 11.4 20.3 0.56 9.9 6.0 2.7 1 1 2 3 3 3 0 TATA element modulatory factor 1 TATA binding Sec34 PF04136.10 gi|557694562|ref|YP_008797616.1| - 0.23 11.1 9.3 0.24 11.0 2.2 2.6 1 1 1 2 2 2 0 Sec34-like family Seryl_tRNA_N PF02403.17 gi|557694562|ref|YP_008797616.1| - 0.26 11.3 11.2 1.1 9.2 4.2 2.6 1 1 1 2 2 2 0 Seryl-tRNA synthetase N-terminal domain DASH_Spc34 PF08657.5 gi|557694562|ref|YP_008797616.1| - 0.27 10.8 17.9 1.7 8.2 2.5 2.6 1 1 1 2 2 2 0 DASH complex subunit Spc34 RmuC PF02646.11 gi|557694562|ref|YP_008797616.1| - 0.31 9.8 11.8 0.99 8.1 3.1 2.2 2 0 0 2 2 2 0 RmuC family Jnk-SapK_ap_N PF09744.4 gi|557694562|ref|YP_008797616.1| - 0.32 10.9 16.3 0.14 12.0 4.0 2.6 1 1 1 2 2 2 0 JNK_SAPK-associated protein-1 DUF1664 PF07889.7 gi|557694562|ref|YP_008797616.1| - 0.35 10.6 10.3 7.2 6.4 0.2 3.6 2 1 2 4 4 4 0 Protein of unknown function (DUF1664) ERM PF00769.14 gi|557694562|ref|YP_008797616.1| - 0.36 10.3 15.6 0.76 9.2 10.6 1.5 1 1 0 1 1 1 0 Ezrin/radixin/moesin family Rab5-bind PF09311.6 gi|557694562|ref|YP_008797616.1| - 0.42 10.4 20.2 0.75 9.6 9.4 3.1 1 1 1 2 2 2 0 Rabaptin-like protein Syntaxin-6_N PF09177.6 gi|557694562|ref|YP_008797616.1| - 0.55 10.6 12.9 0.93 9.9 0.5 3.4 1 1 2 3 3 3 0 Syntaxin 6, N-terminal Cluap1 PF10234.4 gi|557694562|ref|YP_008797616.1| - 0.65 9.1 16.9 0.58 9.3 10.4 1.7 1 1 1 2 2 2 0 Clusterin-associated protein-1 Prefoldin PF02996.12 gi|557694562|ref|YP_008797616.1| - 0.66 9.6 17.5 2.1 8.0 0.3 3.9 2 1 1 4 4 4 0 Prefoldin subunit CENP-F_N PF10481.4 gi|557694562|ref|YP_008797616.1| - 0.67 9.2 10.6 1.4 8.2 5.1 2.4 1 1 2 3 3 3 0 Cenp-F N-terminal domain FlxA PF14282.1 gi|557694562|ref|YP_008797616.1| - 0.87 9.5 16.1 2.7 7.9 0.3 3.2 1 1 2 3 3 3 0 FlxA-like protein Occludin_ELL PF07303.8 gi|557694562|ref|YP_008797616.1| - 0.88 10.3 14.4 3.2 8.5 4.0 3.4 1 1 3 4 4 4 0 Occludin homology domain CCDC155 PF14662.1 gi|557694562|ref|YP_008797616.1| - 0.89 9.1 19.9 2.3 7.7 13.8 1.6 1 1 0 1 1 1 0 Coiled-coil region of CCDC155 Spc24 PF08286.6 gi|557694562|ref|YP_008797616.1| - 1 9.0 16.1 3.1 7.4 1.9 3.7 1 1 2 3 3 3 0 Spc24 subunit of Ndc80 Lebercilin PF15619.1 gi|557694562|ref|YP_008797616.1| - 1 8.7 21.8 21 4.4 14.9 2.2 1 1 0 1 1 1 0 Ciliary protein causing Leber congenital amaurosis disease DUF4140 PF13600.1 gi|557694562|ref|YP_008797616.1| - 1.1 9.7 15.1 4 7.9 1.1 4.1 1 1 3 4 4 4 0 N-terminal domain of unknown function (DUF4140) GrpE PF01025.14 gi|557694562|ref|YP_008797616.1| - 1.1 8.7 14.1 4.9 6.6 0.2 3.4 1 1 3 4 4 3 0 GrpE NPV_P10 PF05531.7 gi|557694562|ref|YP_008797616.1| - 1.2 9.4 5.3 6.9 7.0 1.4 3.2 1 1 1 2 2 2 0 Nucleopolyhedrovirus P10 protein Sipho_Gp157 PF05565.6 gi|557694562|ref|YP_008797616.1| - 1.4 8.4 7.6 5.9 6.4 3.3 2.7 1 1 1 2 2 2 0 Siphovirus Gp157 FlaC_arch PF05377.6 gi|557694562|ref|YP_008797616.1| - 1.5 8.7 9.7 35 4.4 0.6 4.2 1 1 3 4 4 3 0 Flagella accessory protein C (FlaC) IL11 PF07400.6 gi|557694562|ref|YP_008797616.1| - 1.5 8.3 5.5 0.19 11.2 0.6 1.9 3 0 0 3 3 1 0 Interleukin 11 Laminin_II PF06009.7 gi|557694562|ref|YP_008797616.1| - 1.7 8.3 10.2 1.6 8.4 3.5 2.2 1 1 1 2 2 2 0 Laminin Domain II Phage_Mu_Gam PF07352.7 gi|557694562|ref|YP_008797616.1| - 2 7.8 8.1 2.2 7.8 4.5 1.7 1 1 1 2 2 2 0 Bacteriophage Mu Gam like protein WXG100 PF06013.7 gi|557694562|ref|YP_008797616.1| - 2.5 8.1 9.2 5.8 6.9 1.5 3.3 1 1 4 5 5 5 0 Proteins of 100 residues with WXG HrpB7 PF09486.5 gi|557694562|ref|YP_008797616.1| - 2.7 7.9 13.0 9.1 6.1 0.8 2.9 1 1 1 2 2 2 0 Bacterial type III secretion protein (HrpB7) Cep57_CLD_2 PF14197.1 gi|557694562|ref|YP_008797616.1| - 3.3 7.7 24.5 4.7 7.2 5.8 3.2 2 1 1 3 3 3 0 Centrosome localisation domain of PPC89 FliD_N PF02465.13 gi|557694562|ref|YP_008797616.1| - 3.4 8.0 11.2 9 6.7 2.1 3.4 1 1 2 3 3 3 0 Flagellar hook-associated protein 2 N-terminus PEP-utilisers_N PF05524.8 gi|557694562|ref|YP_008797616.1| - 3.7 7.3 8.5 3.6 7.4 0.7 2.8 1 1 2 3 3 2 0 PEP-utilising enzyme, N-terminal Matrilin_ccoil PF10393.4 gi|557694562|ref|YP_008797616.1| - 3.9 6.9 5.9 8.7 5.8 0.2 3.1 3 0 0 3 3 2 0 Trimeric coiled-coil oligomerisation domain of matrilin Lzipper-MIP1 PF14389.1 gi|557694562|ref|YP_008797616.1| - 3.9 7.6 12.8 1.7 8.8 2.1 3.8 2 2 1 3 3 3 0 Leucine-zipper of ternary complex factor MIP1 DUF4407 PF14362.1 gi|557694562|ref|YP_008797616.1| - 4 6.3 13.0 9.8 5.0 4.4 3.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4407) EMP24_GP25L PF01105.19 gi|557694562|ref|YP_008797616.1| - 4.1 7.0 18.1 2.2 7.9 3.7 3.6 2 1 2 4 4 3 0 emp24/gp25L/p24 family/GOLD FadA PF09403.5 gi|557694562|ref|YP_008797616.1| - 4.3 7.3 12.1 0.87 9.6 1.3 3.4 1 1 2 3 3 2 0 Adhesion protein FadA DUF4337 PF14235.1 gi|557694562|ref|YP_008797616.1| - 4.4 7.1 11.3 6.5 6.5 1.1 3.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4337) Phage_GP20 PF06810.6 gi|557694562|ref|YP_008797616.1| - 4.4 6.7 11.1 17 4.8 1.2 3.0 1 1 2 3 3 3 0 Phage minor structural protein GP20 Syntaxin PF00804.20 gi|557694562|ref|YP_008797616.1| - 4.5 7.4 12.5 9.9 6.3 0.3 2.7 1 1 1 2 2 2 0 Syntaxin DUF1192 PF06698.6 gi|557694562|ref|YP_008797616.1| - 4.8 7.0 8.8 8.6 6.2 0.9 2.6 1 1 1 2 2 2 0 Protein of unknown function (DUF1192) DUF2203 PF09969.4 gi|557694562|ref|YP_008797616.1| - 4.8 7.4 8.5 1.3e+02 2.8 5.9 2.5 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2203) BRE1 PF08647.6 gi|557694562|ref|YP_008797616.1| - 4.9 7.1 11.6 5.4 7.0 2.2 2.3 1 1 1 2 2 2 0 BRE1 E3 ubiquitin ligase Exonuc_VII_L PF02601.10 gi|557694562|ref|YP_008797616.1| - 5.7 6.0 18.7 24 4.0 13.0 1.8 1 1 0 1 1 1 0 Exonuclease VII, large subunit DUF607 PF04678.8 gi|557694562|ref|YP_008797616.1| - 5.7 6.8 10.6 4.4 7.1 2.4 2.6 1 1 2 3 3 2 0 Protein of unknown function, DUF607 Sec5 PF15469.1 gi|557694562|ref|YP_008797616.1| - 6.1 6.5 9.7 2.6 7.7 2.3 2.2 1 1 0 2 2 2 0 Exocyst complex component Sec5 Snapin_Pallidin PF14712.1 gi|557694562|ref|YP_008797616.1| - 6.3 7.1 16.2 0.27 11.5 4.9 2.6 2 1 0 2 2 2 0 Snapin/Pallidin OmpH PF03938.9 gi|557694562|ref|YP_008797616.1| - 7.1 6.5 13.5 35 4.3 9.3 2.0 1 1 0 1 1 1 0 Outer membrane protein (OmpH-like) DUF848 PF05852.6 gi|557694562|ref|YP_008797616.1| - 7.5 6.3 11.4 6.4 6.6 3.8 2.5 1 1 0 2 2 2 0 Gammaherpesvirus protein of unknown function (DUF848) CENP-H PF05837.7 gi|557694562|ref|YP_008797616.1| - 8.3 6.6 12.3 0.27 11.4 2.0 2.6 1 1 2 3 3 3 0 Centromere protein H (CENP-H) Rho_Binding PF08912.6 gi|557694562|ref|YP_008797616.1| - 8.5 6.7 14.0 3 8.2 0.7 3.4 1 1 3 4 4 3 0 Rho Binding Acetyltransf_11 PF13720.1 gi|557694562|ref|YP_008797616.1| - 9 6.6 6.7 12 6.2 0.2 3.2 1 1 2 3 3 2 0 Udp N-acetylglucosamine O-acyltransferase; Domain 2 DUF2968 PF11180.3 gi|557694562|ref|YP_008797616.1| - 9.2 5.5 19.4 23 4.2 6.6 2.7 1 1 1 2 2 2 0 Protein of unknown function (DUF2968) XhlA PF10779.4 gi|557694562|ref|YP_008797616.1| - 9.4 6.2 8.0 2.1e+02 1.9 0.0 2.9 2 1 0 2 2 2 0 Haemolysin XhlA ThiF PF00899.16 gi|557694563|ref|YP_008797617.1| - 6.4e-47 158.7 0.0 1e-46 158.1 0.0 1.3 1 0 0 1 1 1 1 ThiF family MoeZ_MoeB PF05237.8 gi|557694563|ref|YP_008797617.1| - 2.6e-34 116.6 0.0 5.1e-34 115.7 0.0 1.5 1 0 0 1 1 1 1 MoeZ/MoeB domain Rhodanese PF00581.15 gi|557694563|ref|YP_008797617.1| - 9.6e-21 74.2 0.0 1.8e-20 73.3 0.0 1.5 1 0 0 1 1 1 1 Rhodanese-like domain Shikimate_DH PF01488.15 gi|557694563|ref|YP_008797617.1| - 0.0021 18.1 1.6 0.076 13.1 0.3 2.8 2 1 0 3 3 3 1 Shikimate / quinate 5-dehydrogenase Ldh_1_N PF00056.18 gi|557694563|ref|YP_008797617.1| - 0.041 13.7 0.9 0.092 12.5 0.6 1.7 1 1 0 1 1 1 0 lactate/malate dehydrogenase, NAD binding domain 3HCDH_N PF02737.13 gi|557694563|ref|YP_008797617.1| - 0.17 11.5 0.0 0.35 10.5 0.0 1.5 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ABC_tran PF00005.22 gi|557694564|ref|YP_008797618.1| - 1.3e-31 109.7 0.0 1.7e-31 109.3 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|557694564|ref|YP_008797618.1| - 7.4e-11 42.5 0.0 3.9e-05 23.7 0.0 2.1 1 1 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|557694564|ref|YP_008797618.1| - 1.3e-07 31.0 0.1 0.00045 19.5 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_16 PF13191.1 gi|557694564|ref|YP_008797618.1| - 1.9e-05 24.7 0.6 8.8e-05 22.5 0.4 1.8 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|557694564|ref|YP_008797618.1| - 5.9e-05 23.2 0.4 0.00036 20.6 0.3 1.9 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|557694564|ref|YP_008797618.1| - 0.00024 21.8 0.3 0.00035 21.3 0.2 1.7 1 1 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|557694564|ref|YP_008797618.1| - 0.00081 19.0 0.9 0.0049 16.6 0.0 2.3 3 0 0 3 3 2 1 Part of AAA domain AAA_18 PF13238.1 gi|557694564|ref|YP_008797618.1| - 0.00098 19.4 0.3 0.0036 17.5 0.0 1.9 1 1 0 2 2 2 1 AAA domain AAA_29 PF13555.1 gi|557694564|ref|YP_008797618.1| - 0.0011 18.4 0.0 0.0023 17.4 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|557694564|ref|YP_008797618.1| - 0.0012 19.2 0.4 0.004 17.5 0.3 1.9 1 1 0 1 1 1 1 AAA domain SbcCD_C PF13558.1 gi|557694564|ref|YP_008797618.1| - 0.0012 18.6 0.0 0.013 15.3 0.0 2.2 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_13 PF13166.1 gi|557694564|ref|YP_008797618.1| - 0.0031 16.0 0.0 0.036 12.5 0.0 2.0 2 0 0 2 2 2 1 AAA domain Arch_ATPase PF01637.13 gi|557694564|ref|YP_008797618.1| - 0.0041 16.8 0.1 0.0099 15.5 0.0 1.8 1 1 0 1 1 1 1 Archaeal ATPase NTPase_1 PF03266.10 gi|557694564|ref|YP_008797618.1| - 0.0042 16.8 0.3 0.98 9.1 0.0 2.2 2 0 0 2 2 2 1 NTPase DUF258 PF03193.11 gi|557694564|ref|YP_008797618.1| - 0.0042 16.2 0.0 0.0069 15.5 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_33 PF13671.1 gi|557694564|ref|YP_008797618.1| - 0.0043 16.9 0.6 0.01 15.7 0.4 2.0 1 1 0 1 1 1 1 AAA domain IstB_IS21 PF01695.12 gi|557694564|ref|YP_008797618.1| - 0.0051 16.2 0.2 1.7 7.9 0.0 2.6 3 1 0 3 3 2 1 IstB-like ATP binding protein AAA_10 PF12846.2 gi|557694564|ref|YP_008797618.1| - 0.006 16.0 0.6 0.0079 15.6 0.4 1.5 1 1 0 1 1 1 1 AAA-like domain MobB PF03205.9 gi|557694564|ref|YP_008797618.1| - 0.0074 15.9 0.1 0.015 14.9 0.0 1.5 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_30 PF13604.1 gi|557694564|ref|YP_008797618.1| - 0.0082 15.7 0.1 0.077 12.5 0.0 2.0 2 0 0 2 2 2 1 AAA domain MMR_HSR1 PF01926.18 gi|557694564|ref|YP_008797618.1| - 0.0084 16.0 0.1 0.39 10.6 0.0 2.3 2 1 0 2 2 2 1 50S ribosome-binding GTPase AAA_25 PF13481.1 gi|557694564|ref|YP_008797618.1| - 0.015 14.7 0.0 0.057 12.8 0.0 1.8 2 0 0 2 2 2 0 AAA domain NACHT PF05729.7 gi|557694564|ref|YP_008797618.1| - 0.016 14.8 0.1 0.042 13.5 0.0 1.8 2 0 0 2 2 2 0 NACHT domain PhoH PF02562.11 gi|557694564|ref|YP_008797618.1| - 0.024 13.8 0.0 0.049 12.8 0.0 1.6 1 0 0 1 1 1 0 PhoH-like protein cobW PF02492.14 gi|557694564|ref|YP_008797618.1| - 0.032 13.6 0.3 0.07 12.5 0.1 1.6 1 1 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain T2SE PF00437.15 gi|557694564|ref|YP_008797618.1| - 0.037 12.9 0.0 0.085 11.7 0.0 1.5 2 0 0 2 2 2 0 Type II/IV secretion system protein NB-ARC PF00931.17 gi|557694564|ref|YP_008797618.1| - 0.04 12.7 0.0 0.085 11.6 0.0 1.5 1 0 0 1 1 1 0 NB-ARC domain AAA_28 PF13521.1 gi|557694564|ref|YP_008797618.1| - 0.048 13.6 0.0 0.12 12.3 0.0 1.7 1 0 0 1 1 1 0 AAA domain SRPRB PF09439.5 gi|557694564|ref|YP_008797618.1| - 0.059 12.5 0.0 0.74 8.9 0.0 2.2 2 0 0 2 2 2 0 Signal recognition particle receptor beta subunit AAA_14 PF13173.1 gi|557694564|ref|YP_008797618.1| - 0.066 13.1 0.0 0.12 12.2 0.0 1.5 1 0 0 1 1 1 0 AAA domain ATP_bind_1 PF03029.12 gi|557694564|ref|YP_008797618.1| - 0.091 12.2 0.1 0.62 9.5 0.0 2.0 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein Zeta_toxin PF06414.7 gi|557694564|ref|YP_008797618.1| - 0.11 11.6 0.0 0.19 10.7 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin AAA_24 PF13479.1 gi|557694564|ref|YP_008797618.1| - 0.11 12.0 0.1 0.28 10.7 0.0 1.6 2 0 0 2 2 2 0 AAA domain CARDB PF07705.6 gi|557694565|ref|YP_008797619.1| - 1.8e-13 50.3 17.0 0.00073 19.5 0.2 5.5 4 2 2 6 6 6 4 CARDB NPCBM_assoc PF10633.4 gi|557694565|ref|YP_008797619.1| - 5.5e-11 42.3 9.8 0.1 12.6 0.3 6.4 5 2 0 5 5 5 4 NPCBM-associated, NEW3 domain of alpha-galactosidase TRAP_beta PF05753.9 gi|557694565|ref|YP_008797619.1| - 4.7e-07 29.1 6.0 0.0082 15.3 0.1 4.2 4 0 0 4 4 4 3 Translocon-associated protein beta (TRAPB) FixG_C PF11614.3 gi|557694565|ref|YP_008797619.1| - 3.7e-05 23.8 1.5 0.39 10.8 0.0 4.8 4 2 1 5 5 5 1 IG-like fold at C-terminal of FixG, putative oxidoreductase PHTB1_C PF14728.1 gi|557694565|ref|YP_008797619.1| - 0.0016 17.3 0.2 0.13 11.0 0.0 2.2 2 0 0 2 2 2 1 PTHB1 C-terminus DUF11 PF01345.13 gi|557694565|ref|YP_008797619.1| - 0.016 15.2 0.1 0.016 15.2 0.1 5.3 5 0 0 5 5 5 0 Domain of unknown function DUF11 DUF3869 PF12985.2 gi|557694565|ref|YP_008797619.1| - 0.021 15.2 1.2 1.4 9.3 0.0 3.5 4 0 0 4 4 4 0 Domain of unknown function (DUF3869) Transglut_C PF00927.17 gi|557694565|ref|YP_008797619.1| - 0.025 14.6 5.1 26 4.9 0.0 5.3 5 1 1 6 6 6 0 Transglutaminase family, C-terminal ig like domain TRAP_alpha PF03896.11 gi|557694565|ref|YP_008797619.1| - 0.089 11.7 0.0 11 4.9 0.0 2.6 2 0 0 2 2 2 0 Translocon-associated protein (TRAP), alpha subunit Dynactin_p62 PF05502.8 gi|557694565|ref|YP_008797619.1| - 0.099 11.3 0.1 0.14 10.8 0.1 1.2 1 0 0 1 1 1 0 Dynactin p62 family DUF2790 PF10976.3 gi|557694565|ref|YP_008797619.1| - 0.14 11.9 0.1 6.2 6.6 0.0 3.0 3 0 0 3 3 3 0 Protein of unknown function (DUF2790) FtsX PF02687.16 gi|557694566|ref|YP_008797620.1| - 3e-24 85.0 7.5 3e-24 85.0 5.2 2.4 2 0 0 2 2 2 1 FtsX-like permease family MacB_PCD PF12704.2 gi|557694566|ref|YP_008797620.1| - 7.6e-24 84.5 2.2 7.6e-24 84.5 1.5 2.9 3 0 0 3 3 3 1 MacB-like periplasmic core domain DUF1743 PF08489.6 gi|557694567|ref|YP_008797621.1| - 1e-29 102.6 0.0 4e-27 94.2 0.0 2.2 1 1 1 2 2 2 2 Domain of unknown function (DUF1743) tRNA_anti-codon PF01336.20 gi|557694567|ref|YP_008797621.1| - 3e-11 43.0 1.5 5.7e-11 42.1 1.0 1.5 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain DZR PF12773.2 gi|557694567|ref|YP_008797621.1| - 0.0039 16.9 0.4 0.0081 15.9 0.3 1.5 1 0 0 1 1 1 1 Double zinc ribbon tRNA_anti_2 PF13742.1 gi|557694567|ref|YP_008797621.1| - 0.0039 17.0 0.0 0.0069 16.2 0.0 1.4 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain Zn_Tnp_IS1595 PF12760.2 gi|557694567|ref|YP_008797621.1| - 0.058 13.2 2.7 0.17 11.7 1.9 1.8 1 1 0 1 1 1 0 Transposase zinc-ribbon domain OrfB_Zn_ribbon PF07282.6 gi|557694567|ref|YP_008797621.1| - 0.08 12.6 1.5 0.17 11.5 1.0 1.5 1 0 0 1 1 1 0 Putative transposase DNA-binding domain Zn-ribbon_8 PF09723.5 gi|557694567|ref|YP_008797621.1| - 0.095 12.6 1.0 9.6 6.2 0.0 3.0 2 0 0 2 2 2 0 Zinc ribbon domain zf-FPG_IleRS PF06827.9 gi|557694567|ref|YP_008797621.1| - 0.1 12.2 4.4 3.3 7.4 3.1 2.5 1 1 1 2 2 2 0 Zinc finger found in FPG and IleRS zinc_ribbon_2 PF13240.1 gi|557694567|ref|YP_008797621.1| - 0.11 12.0 5.7 1.5 8.4 0.1 2.5 2 0 0 2 2 2 0 zinc-ribbon domain C1_1 PF00130.17 gi|557694567|ref|YP_008797621.1| - 0.15 11.8 0.2 0.25 11.0 0.1 1.3 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) zf-NADH-PPase PF09297.6 gi|557694567|ref|YP_008797621.1| - 0.28 10.7 7.2 2.6 7.6 5.3 2.4 2 1 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain zf-ISL3 PF14690.1 gi|557694567|ref|YP_008797621.1| - 0.62 10.1 4.0 4.7 7.3 0.6 2.5 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 ACT PF01842.20 gi|557694568|ref|YP_008797622.1| - 1.1e-08 34.3 0.0 2.2e-08 33.4 0.0 1.5 1 0 0 1 1 1 1 ACT domain V4R PF02830.13 gi|557694568|ref|YP_008797622.1| - 1e-06 28.4 0.2 2e-06 27.5 0.1 1.4 1 0 0 1 1 1 1 V4R domain ACT_4 PF13291.1 gi|557694568|ref|YP_008797622.1| - 0.00045 20.4 0.5 0.0017 18.6 0.4 1.9 1 1 0 1 1 1 1 ACT domain PhoU PF01895.14 gi|557694569|ref|YP_008797623.1| - 1.7e-12 47.6 5.2 1.6e-07 31.6 1.0 2.5 2 0 0 2 2 2 2 PhoU domain Antitoxin-MazE PF04014.13 gi|557694569|ref|YP_008797623.1| - 1.5e-05 24.6 0.1 4.4e-05 23.1 0.1 1.8 1 0 0 1 1 1 1 Antidote-toxin recognition MazE Apolipoprotein PF01442.13 gi|557694569|ref|YP_008797623.1| - 0.039 13.4 1.3 0.063 12.7 0.7 1.5 1 1 0 1 1 1 0 Apolipoprotein A1/A4/E domain ICL PF00463.16 gi|557694570|ref|YP_008797624.1| - 2.7e-132 441.6 0.2 8.4e-74 248.6 0.0 2.0 1 1 1 2 2 2 2 Isocitrate lyase family PEP_mutase PF13714.1 gi|557694570|ref|YP_008797624.1| - 9.5e-18 64.2 0.0 1.9e-17 63.3 0.0 1.4 1 1 0 1 1 1 1 Phosphoenolpyruvate phosphomutase Malate_synthase PF01274.17 gi|557694571|ref|YP_008797625.1| - 5.5e-175 582.3 0.0 6.7e-175 582.0 0.0 1.0 1 0 0 1 1 1 1 Malate synthase HpcH_HpaI PF03328.9 gi|557694571|ref|YP_008797625.1| - 0.00076 18.4 0.0 0.014 14.2 0.0 2.3 2 1 0 2 2 2 1 HpcH/HpaI aldolase/citrate lyase family UPF0020 PF01170.13 gi|557694572|ref|YP_008797626.1| - 6.8e-29 100.7 0.0 9.4e-29 100.2 0.0 1.2 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 THUMP PF02926.12 gi|557694572|ref|YP_008797626.1| - 5.8e-20 71.6 0.2 1.1e-19 70.7 0.1 1.4 1 0 0 1 1 1 1 THUMP domain Methyltransf_26 PF13659.1 gi|557694572|ref|YP_008797626.1| - 8.3e-15 54.8 0.0 1.6e-14 53.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|557694572|ref|YP_008797626.1| - 1.7e-07 30.9 0.0 4.7e-06 26.2 0.0 2.3 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|557694572|ref|YP_008797626.1| - 1e-05 26.0 0.0 3.4e-05 24.3 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain MTS PF05175.9 gi|557694572|ref|YP_008797626.1| - 0.00016 21.0 0.0 0.00025 20.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_15 PF09445.5 gi|557694572|ref|YP_008797626.1| - 0.00061 19.3 0.0 0.0028 17.2 0.0 2.0 3 0 0 3 3 3 1 RNA cap guanine-N2 methyltransferase Alpha_kinase PF02816.13 gi|557694573|ref|YP_008797627.1| - 0.047 13.3 0.0 0.075 12.6 0.0 1.2 1 0 0 1 1 1 0 Alpha-kinase family PIG-U PF06728.8 gi|557694573|ref|YP_008797627.1| - 0.061 12.1 6.4 0.089 11.6 4.4 1.2 1 0 0 1 1 1 0 GPI transamidase subunit PIG-U MFS_1 PF07690.11 gi|557694573|ref|YP_008797627.1| - 0.09 11.4 12.4 0.26 9.9 8.6 1.8 1 1 0 1 1 1 0 Major Facilitator Superfamily Acyl_transf_3 PF01757.17 gi|557694573|ref|YP_008797627.1| - 0.26 10.0 12.7 0.39 9.5 8.8 1.2 1 0 0 1 1 1 0 Acyltransferase family MARVEL PF01284.18 gi|557694573|ref|YP_008797627.1| - 0.34 10.7 6.0 1 9.1 4.2 1.8 1 1 0 1 1 1 0 Membrane-associating domain DUF1212 PF06738.7 gi|557694573|ref|YP_008797627.1| - 0.51 9.7 7.0 1.6 8.1 0.3 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF1212) DUF202 PF02656.10 gi|557694573|ref|YP_008797627.1| - 2.4 8.4 5.3 7.1 6.9 0.2 2.7 2 1 0 2 2 2 0 Domain of unknown function (DUF202) MarR PF01047.17 gi|557694574|ref|YP_008797628.1| - 1.2e-05 24.8 0.2 0.0003 20.4 0.0 2.4 2 0 0 2 2 2 1 MarR family MarR_2 PF12802.2 gi|557694574|ref|YP_008797628.1| - 9.2e-05 22.0 0.1 0.00023 20.7 0.1 1.7 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.2 gi|557694574|ref|YP_008797628.1| - 0.00073 19.2 0.9 0.0014 18.4 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain TrmB PF01978.14 gi|557694574|ref|YP_008797628.1| - 0.00099 18.7 0.0 0.0017 17.9 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_27 PF13463.1 gi|557694574|ref|YP_008797628.1| - 0.0044 17.3 0.1 0.012 15.8 0.1 1.8 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_Crp_2 PF13545.1 gi|557694574|ref|YP_008797628.1| - 0.006 16.3 0.5 0.016 14.9 0.0 1.9 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain Rrf2 PF02082.15 gi|557694574|ref|YP_008797628.1| - 0.0094 16.0 0.1 0.022 14.8 0.1 1.5 1 0 0 1 1 1 1 Transcriptional regulator HTH_IclR PF09339.5 gi|557694574|ref|YP_008797628.1| - 0.011 15.3 0.2 0.029 13.9 0.1 1.8 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_45 PF14947.1 gi|557694574|ref|YP_008797628.1| - 0.011 15.5 0.0 0.027 14.2 0.0 1.6 2 0 0 2 2 2 0 Winged helix-turn-helix HTH_34 PF13601.1 gi|557694574|ref|YP_008797628.1| - 0.019 14.9 0.1 0.19 11.7 0.0 2.1 2 0 0 2 2 2 0 Winged helix DNA-binding domain HTH_5 PF01022.15 gi|557694574|ref|YP_008797628.1| - 0.021 14.4 0.4 0.11 12.1 0.0 2.2 2 1 1 3 3 3 0 Bacterial regulatory protein, arsR family SWIRM PF04433.12 gi|557694574|ref|YP_008797628.1| - 0.032 14.3 0.0 0.056 13.5 0.0 1.4 1 0 0 1 1 1 0 SWIRM domain HxlR PF01638.12 gi|557694574|ref|YP_008797628.1| - 0.04 13.5 0.0 0.073 12.7 0.0 1.5 1 0 0 1 1 1 0 HxlR-like helix-turn-helix HTH_1 PF00126.22 gi|557694574|ref|YP_008797628.1| - 0.042 13.5 0.1 0.13 11.9 0.0 1.9 2 0 0 2 2 2 0 Bacterial regulatory helix-turn-helix protein, lysR family z-alpha PF02295.12 gi|557694574|ref|YP_008797628.1| - 0.052 13.3 0.0 0.11 12.3 0.0 1.5 1 0 0 1 1 1 0 Adenosine deaminase z-alpha domain DUF2250 PF10007.4 gi|557694574|ref|YP_008797628.1| - 0.072 13.0 0.1 0.2 11.5 0.0 1.8 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) DUF1803 PF08820.5 gi|557694574|ref|YP_008797628.1| - 0.093 12.4 0.0 0.17 11.5 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF1803) PaaX PF07848.7 gi|557694574|ref|YP_008797628.1| - 0.21 11.5 1.5 0.62 10.1 0.2 2.1 2 0 0 2 2 2 0 PaaX-like protein Proteasome PF00227.21 gi|557694575|ref|YP_008797629.1| - 8e-47 158.9 0.1 1e-46 158.6 0.0 1.0 1 0 0 1 1 1 1 Proteasome subunit TGF_beta_GS PF08515.7 gi|557694575|ref|YP_008797629.1| - 4.8 6.6 5.6 2.7 7.3 2.0 2.0 2 0 0 2 2 2 0 Transforming growth factor beta type I GS-motif Proteasome PF00227.21 gi|557694576|ref|YP_008797630.1| - 1.3e-38 132.1 0.0 1.6e-38 131.8 0.0 1.1 1 0 0 1 1 1 1 Proteasome subunit AsnC_trans_reg PF01037.16 gi|557694577|ref|YP_008797631.1| - 6e-14 51.4 1.1 6.5e-14 51.3 0.7 1.0 1 0 0 1 1 1 1 AsnC family GYD PF08734.6 gi|557694577|ref|YP_008797631.1| - 0.02 14.6 0.1 0.025 14.3 0.0 1.2 1 0 0 1 1 1 0 GYD domain Meth_synt_2 PF01717.13 gi|557694577|ref|YP_008797631.1| - 0.055 12.4 0.2 0.059 12.3 0.1 1.0 1 0 0 1 1 1 0 Cobalamin-independent synthase, Catalytic domain BAF PF02961.9 gi|557694577|ref|YP_008797631.1| - 0.087 13.1 0.0 0.097 12.9 0.0 1.1 1 0 0 1 1 1 0 Barrier to autointegration factor Lactamase_B PF00753.22 gi|557694578|ref|YP_008797632.1| - 2.9e-32 111.8 0.8 3.4e-32 111.6 0.6 1.1 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|557694578|ref|YP_008797632.1| - 1.7e-05 24.4 0.1 2.2e-05 24.1 0.0 1.3 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.1 gi|557694578|ref|YP_008797632.1| - 0.04 13.6 0.0 0.047 13.3 0.0 1.2 1 0 0 1 1 1 0 Beta-lactamase superfamily domain Cytochrom_D1 PF02239.11 gi|557694578|ref|YP_008797632.1| - 0.087 11.0 0.0 0.12 10.6 0.0 1.2 1 0 0 1 1 1 0 Cytochrome D1 heme domain UDG PF03167.14 gi|557694579|ref|YP_008797633.1| - 2e-30 105.2 0.0 2.5e-30 104.9 0.0 1.1 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily MFS_1 PF07690.11 gi|557694580|ref|YP_008797634.1| - 1.1e-35 123.0 52.5 6.2e-31 107.3 24.9 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.2 gi|557694580|ref|YP_008797634.1| - 0.0015 18.2 4.2 0.18 11.6 0.2 3.1 2 1 0 2 2 2 2 MFS_1 like family MFS_3 PF05977.8 gi|557694580|ref|YP_008797634.1| - 0.0018 16.4 28.0 0.02 13.0 19.4 2.5 1 1 0 1 1 1 1 Transmembrane secretion effector OATP PF03137.15 gi|557694580|ref|YP_008797634.1| - 6.5 4.6 9.0 0.86 7.5 0.7 2.7 2 1 1 3 3 3 0 Organic Anion Transporter Polypeptide (OATP) family DUF2029 PF09594.5 gi|557694581|ref|YP_008797635.1| - 5.6e-09 35.8 26.9 5.6e-09 35.8 18.6 2.8 2 1 1 3 3 3 1 Protein of unknown function (DUF2029) PALP PF00291.20 gi|557694582|ref|YP_008797636.1| - 1.3e-65 221.6 0.0 1.6e-65 221.3 0.0 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme NAD_binding_7 PF13241.1 gi|557694582|ref|YP_008797636.1| - 0.0051 17.0 0.0 0.034 14.3 0.0 2.1 2 0 0 2 2 2 1 Putative NAD(P)-binding MFS_1 PF07690.11 gi|557694583|ref|YP_008797637.1| - 3.8e-19 68.6 58.7 6.2e-19 67.9 29.1 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily PhoU PF01895.14 gi|557694584|ref|YP_008797638.1| - 4.9e-09 36.5 6.9 9.1e-07 29.2 0.5 2.7 3 0 0 3 3 3 2 PhoU domain Antitoxin-MazE PF04014.13 gi|557694584|ref|YP_008797638.1| - 1.8e-05 24.3 0.4 4.9e-05 22.9 0.1 1.8 2 0 0 2 2 2 1 Antidote-toxin recognition MazE Nitroreductase PF00881.19 gi|557694585|ref|YP_008797639.1| - 5.6e-23 81.5 0.0 5.7e-11 42.5 0.0 2.2 2 0 0 2 2 2 2 Nitroreductase family ThiI PF02568.9 gi|557694586|ref|YP_008797640.1| - 2.2e-53 180.6 0.0 4.3e-53 179.7 0.0 1.4 1 0 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) QueC PF06508.8 gi|557694586|ref|YP_008797640.1| - 2e-06 27.2 0.1 0.029 13.6 0.0 2.6 3 0 0 3 3 3 2 Queuosine biosynthesis protein QueC THUMP PF02926.12 gi|557694586|ref|YP_008797640.1| - 9.6e-06 25.5 0.3 3.8e-05 23.6 0.1 2.2 2 0 0 2 2 2 1 THUMP domain tRNA_Me_trans PF03054.11 gi|557694586|ref|YP_008797640.1| - 0.00011 20.9 0.1 0.00039 19.0 0.0 1.9 2 0 0 2 2 2 1 tRNA methyl transferase ATP_bind_3 PF01171.15 gi|557694586|ref|YP_008797640.1| - 0.024 14.1 0.1 0.79 9.1 0.1 2.4 1 1 0 1 1 1 0 PP-loop family Glyco_hydro_cc PF11790.3 gi|557694586|ref|YP_008797640.1| - 0.081 12.3 0.0 0.13 11.6 0.0 1.2 1 0 0 1 1 1 0 Glycosyl hydrolase catalytic core NAD_synthase PF02540.12 gi|557694586|ref|YP_008797640.1| - 0.13 11.1 0.2 0.97 8.2 0.2 2.1 1 1 0 1 1 1 0 NAD synthase Aldedh PF00171.17 gi|557694587|ref|YP_008797641.1| - 4.7e-166 552.6 0.0 5.5e-166 552.4 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family LuxC PF05893.9 gi|557694587|ref|YP_008797641.1| - 0.0031 16.3 0.0 0.0045 15.7 0.0 1.1 1 0 0 1 1 1 1 Acyl-CoA reductase (LuxC) DUF1487 PF07368.6 gi|557694587|ref|YP_008797641.1| - 0.0075 15.5 0.0 0.29 10.3 0.0 2.1 2 0 0 2 2 2 1 Protein of unknown function (DUF1487) Methyltransf_23 PF13489.1 gi|557694588|ref|YP_008797642.1| - 1.2e-08 34.8 0.0 5.9e-08 32.5 0.0 1.8 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|557694588|ref|YP_008797642.1| - 6.8e-07 29.6 0.0 9.6e-07 29.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|557694588|ref|YP_008797642.1| - 9.2e-05 22.8 0.0 0.00013 22.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_8 PF05148.10 gi|557694588|ref|YP_008797642.1| - 0.00024 20.8 0.0 0.00028 20.5 0.0 1.1 1 0 0 1 1 1 1 Hypothetical methyltransferase Methyltransf_31 PF13847.1 gi|557694588|ref|YP_008797642.1| - 0.00032 20.2 0.0 0.00061 19.4 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|557694588|ref|YP_008797642.1| - 0.0053 16.1 0.0 0.0068 15.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Ubie_methyltran PF01209.13 gi|557694588|ref|YP_008797642.1| - 0.01 14.9 0.0 0.018 14.1 0.0 1.5 1 1 1 2 2 2 0 ubiE/COQ5 methyltransferase family Methyltransf_25 PF13649.1 gi|557694588|ref|YP_008797642.1| - 0.024 14.9 0.0 0.035 14.4 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain MarC PF01914.12 gi|557694589|ref|YP_008797643.1| - 8.3e-39 132.8 14.1 1.1e-38 132.3 9.8 1.2 1 0 0 1 1 1 1 MarC family integral membrane protein QueT PF06177.6 gi|557694590|ref|YP_008797644.1| - 6.4e-11 42.4 8.7 1.3e-10 41.4 6.0 1.5 1 1 0 1 1 1 1 QueT transporter DUF2665 PF11654.3 gi|557694590|ref|YP_008797644.1| - 0.042 13.4 0.5 3.5 7.2 0.0 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF2665) AA_permease_C PF13906.1 gi|557694590|ref|YP_008797644.1| - 0.062 13.1 0.1 0.062 13.1 0.1 2.7 4 0 0 4 4 4 0 C-terminus of AA_permease COX3 PF00510.13 gi|557694591|ref|YP_008797645.1| - 4.7e-25 88.4 9.2 6.3e-25 88.0 6.4 1.0 1 0 0 1 1 1 1 Cytochrome c oxidase subunit III IF-2B PF01008.12 gi|557694592|ref|YP_008797646.1| - 2.2e-29 102.3 0.1 1e-28 100.1 0.0 1.8 1 1 0 1 1 1 1 Initiation factor 2 subunit family ADH_zinc_N PF00107.21 gi|557694593|ref|YP_008797647.1| - 1.3e-34 118.5 0.0 2.1e-34 117.8 0.0 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_N PF08240.7 gi|557694593|ref|YP_008797647.1| - 3.3e-30 104.0 0.1 8.4e-30 102.7 0.0 1.7 2 0 0 2 2 2 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N_2 PF13602.1 gi|557694593|ref|YP_008797647.1| - 2.3e-21 76.9 0.0 4.4e-21 76.0 0.0 1.5 1 0 0 1 1 1 1 Zinc-binding dehydrogenase AlaDh_PNT_C PF01262.16 gi|557694593|ref|YP_008797647.1| - 0.00097 18.7 0.2 0.0016 17.9 0.1 1.5 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain ACP_syn_III_C PF08541.5 gi|557694593|ref|YP_008797647.1| - 0.069 13.1 0.2 0.18 11.8 0.1 1.8 2 0 0 2 2 2 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CN_hydrolase PF00795.17 gi|557694594|ref|YP_008797648.1| - 2.5e-20 72.5 0.0 4.1e-20 71.9 0.0 1.3 1 0 0 1 1 1 1 Carbon-nitrogen hydrolase AP_endonuc_2 PF01261.19 gi|557694595|ref|YP_008797649.1| - 3.6e-38 130.9 0.0 4.3e-38 130.7 0.0 1.1 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel DUF761 PF05553.6 gi|557694595|ref|YP_008797649.1| - 0.14 11.4 0.5 0.25 10.7 0.4 1.4 1 0 0 1 1 1 0 Cotton fibre expressed protein Glyoxalase_2 PF12681.2 gi|557694596|ref|YP_008797650.1| - 8.5e-18 64.9 0.0 1e-10 42.1 0.0 2.5 3 0 0 3 3 3 2 Glyoxalase-like domain Glyoxalase PF00903.20 gi|557694596|ref|YP_008797650.1| - 2.8e-17 62.8 0.0 1.5e-07 31.4 0.0 2.2 2 0 0 2 2 2 2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_4 PF13669.1 gi|557694596|ref|YP_008797650.1| - 0.026 14.5 0.0 9.5 6.2 0.0 3.3 2 2 0 2 2 2 0 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Peptidase_S24 PF00717.18 gi|557694597|ref|YP_008797651.1| - 6.6e-10 38.4 0.7 1.1e-09 37.7 0.5 1.4 1 0 0 1 1 1 1 Peptidase S24-like CarboxypepD_reg PF13620.1 gi|557694598|ref|YP_008797652.1| - 1.1e-37 127.9 59.1 2.3e-07 30.7 2.4 10.3 8 2 2 10 10 10 9 Carboxypeptidase regulatory-like domain DUF4480 PF13715.1 gi|557694598|ref|YP_008797652.1| - 2.3e-19 69.2 20.0 0.0026 17.7 0.3 8.0 6 2 2 8 8 8 6 Domain of unknown function (DUF4480) DUF2012 PF09430.5 gi|557694598|ref|YP_008797652.1| - 1.1e-10 41.4 2.2 0.15 11.9 0.0 6.2 4 2 2 6 6 6 4 Protein of unknown function (DUF2012) Big_1 PF02369.11 gi|557694598|ref|YP_008797652.1| - 7.3e-09 35.4 23.7 0.0062 16.4 0.0 6.9 6 0 0 6 6 6 3 Bacterial Ig-like domain (group 1) DUF4198 PF10670.4 gi|557694598|ref|YP_008797652.1| - 6.5e-08 32.8 8.9 0.0031 17.5 0.0 5.2 5 0 0 5 5 5 2 Domain of unknown function (DUF4198) Cna_B PF05738.8 gi|557694598|ref|YP_008797652.1| - 0.00013 21.6 21.6 1.1 9.1 0.0 7.5 8 1 1 9 9 9 3 Cna protein B-type domain Dioxygenase_C PF00775.16 gi|557694598|ref|YP_008797652.1| - 0.00046 19.4 1.0 1.3 8.2 0.0 4.1 4 0 0 4 4 4 2 Dioxygenase DUF824 PF05688.6 gi|557694598|ref|YP_008797652.1| - 0.001 18.6 13.1 0.26 10.9 0.0 5.6 7 0 0 7 7 7 3 Salmonella repeat of unknown function (DUF824) YtkA PF13115.1 gi|557694598|ref|YP_008797652.1| - 0.011 16.0 6.4 4.7 7.6 0.0 5.6 6 0 0 6 6 6 0 YtkA-like Transcrip_act PF04949.8 gi|557694599|ref|YP_008797653.1| - 0.032 13.8 1.5 0.04 13.5 0.2 1.7 2 0 0 2 2 2 0 Transcriptional activator Sdh5 PF03937.11 gi|557694599|ref|YP_008797653.1| - 0.042 13.5 0.3 0.11 12.1 0.1 1.9 2 0 0 2 2 2 0 Flavinator of succinate dehydrogenase Gag_spuma PF03276.9 gi|557694599|ref|YP_008797653.1| - 0.11 10.7 0.1 0.13 10.5 0.1 1.1 1 0 0 1 1 1 0 Spumavirus gag protein IncA PF04156.9 gi|557694599|ref|YP_008797653.1| - 0.25 10.8 2.4 0.3 10.6 1.6 1.2 1 0 0 1 1 1 0 IncA protein FGGY_N PF00370.16 gi|557694600|ref|YP_008797654.1| - 6.7e-32 110.7 0.0 1.4e-30 106.3 0.0 2.4 1 1 0 1 1 1 1 FGGY family of carbohydrate kinases, N-terminal domain FGGY_C PF02782.11 gi|557694600|ref|YP_008797654.1| - 6.5e-14 52.0 0.1 1.1e-13 51.2 0.1 1.4 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, C-terminal domain BcrAD_BadFG PF01869.15 gi|557694600|ref|YP_008797654.1| - 0.0021 17.4 0.2 0.073 12.3 0.0 2.2 2 0 0 2 2 2 1 BadF/BadG/BcrA/BcrD ATPase family UPRTase PF14681.1 gi|557694601|ref|YP_008797655.1| - 3.7e-53 179.8 0.0 4.2e-53 179.6 0.0 1.0 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase Pribosyltran PF00156.22 gi|557694601|ref|YP_008797655.1| - 9.8e-09 35.0 0.2 1.6e-08 34.2 0.1 1.3 1 0 0 1 1 1 1 Phosphoribosyl transferase domain PRTase_2 PF15609.1 gi|557694601|ref|YP_008797655.1| - 0.022 14.0 0.0 0.075 12.3 0.0 1.8 1 1 0 1 1 1 0 Phosphoribosyl transferase FAD_binding_2 PF00890.19 gi|557694602|ref|YP_008797656.1| - 1.3e-97 327.3 0.0 1.5e-97 327.1 0.0 1.0 1 0 0 1 1 1 1 FAD binding domain DAO PF01266.19 gi|557694602|ref|YP_008797656.1| - 1.2e-10 40.8 1.7 1.7e-06 27.1 0.1 3.3 2 1 0 3 3 3 2 FAD dependent oxidoreductase FAD_oxidored PF12831.2 gi|557694602|ref|YP_008797656.1| - 3.1e-09 36.4 1.0 1.3e-07 31.0 0.3 2.1 2 0 0 2 2 2 1 FAD dependent oxidoreductase HI0933_like PF03486.9 gi|557694602|ref|YP_008797656.1| - 2e-07 29.8 1.9 3.6e-07 29.0 0.8 1.7 2 0 0 2 2 2 1 HI0933-like protein NAD_binding_8 PF13450.1 gi|557694602|ref|YP_008797656.1| - 5.5e-07 29.5 2.0 9.9e-06 25.5 0.8 2.7 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Pyr_redox_2 PF07992.9 gi|557694602|ref|YP_008797656.1| - 1.1e-05 25.3 0.1 0.00021 21.2 0.1 2.4 2 1 1 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.14 gi|557694602|ref|YP_008797656.1| - 0.00026 20.1 0.4 0.00038 19.6 0.3 1.2 1 0 0 1 1 1 1 FAD binding domain Thi4 PF01946.12 gi|557694602|ref|YP_008797656.1| - 0.0016 17.6 1.8 0.0016 17.6 1.3 2.1 3 0 0 3 3 3 1 Thi4 family Pyr_redox_3 PF13738.1 gi|557694602|ref|YP_008797656.1| - 0.0048 16.9 0.1 0.011 15.8 0.1 1.6 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.17 gi|557694602|ref|YP_008797656.1| - 0.015 14.1 0.6 0.056 12.2 0.5 1.7 2 0 0 2 2 2 0 Glucose inhibited division protein A Lycopene_cycl PF05834.7 gi|557694602|ref|YP_008797656.1| - 0.16 10.8 0.1 0.24 10.2 0.1 1.3 1 0 0 1 1 1 0 Lycopene cyclase protein Pyr_redox PF00070.22 gi|557694602|ref|YP_008797656.1| - 0.25 11.7 2.1 0.73 10.2 1.1 2.0 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Amino_oxidase PF01593.19 gi|557694602|ref|YP_008797656.1| - 0.4 9.7 6.7 1.5 7.8 0.6 3.0 3 0 0 3 3 3 0 Flavin containing amine oxidoreductase DUF4131 PF13567.1 gi|557694603|ref|YP_008797657.1| - 0.017 14.5 3.3 0.02 14.3 2.3 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) DUF70 PF01901.11 gi|557694603|ref|YP_008797657.1| - 0.049 12.6 1.1 0.051 12.6 0.7 1.0 1 0 0 1 1 1 0 Protein of unknown function DUF70 DUF1469 PF07332.6 gi|557694603|ref|YP_008797657.1| - 0.11 12.2 5.3 0.12 12.1 3.7 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1469) ABC2_membrane_3 PF12698.2 gi|557694603|ref|YP_008797657.1| - 0.11 11.5 5.6 0.13 11.2 3.9 1.2 1 0 0 1 1 1 0 ABC-2 family transporter protein RAMP4 PF06624.7 gi|557694603|ref|YP_008797657.1| - 0.15 11.6 1.9 1.9 8.1 0.1 2.2 2 0 0 2 2 2 0 Ribosome associated membrane protein RAMP4 DUF4383 PF14325.1 gi|557694603|ref|YP_008797657.1| - 0.16 11.9 8.7 1.4 8.9 0.9 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4383) NfeD PF01957.13 gi|557694603|ref|YP_008797657.1| - 0.25 11.4 3.2 0.28 11.3 2.2 1.0 1 0 0 1 1 1 0 NfeD-like C-terminal, partner-binding DPM2 PF07297.7 gi|557694603|ref|YP_008797657.1| - 0.32 11.3 3.4 1.2 9.4 2.4 1.8 1 1 0 1 1 1 0 Dolichol phosphate-mannose biosynthesis regulatory protein (DPM2) PIG-P PF08510.7 gi|557694603|ref|YP_008797657.1| - 0.34 10.5 6.4 10 5.7 4.5 2.0 1 1 0 1 1 1 0 PIG-P Tetraspannin PF00335.15 gi|557694603|ref|YP_008797657.1| - 0.35 10.1 3.4 0.42 9.8 2.4 1.1 1 0 0 1 1 1 0 Tetraspanin family S1FA PF04689.8 gi|557694603|ref|YP_008797657.1| - 0.63 9.9 4.1 1.5 8.7 0.1 2.1 2 0 0 2 2 2 0 DNA binding protein S1FA DUF1625 PF07787.7 gi|557694603|ref|YP_008797657.1| - 1 8.5 4.1 1.2 8.3 2.8 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1625) DUF2207 PF09972.4 gi|557694603|ref|YP_008797657.1| - 1 7.8 3.6 1.1 7.7 2.5 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) DUF3951 PF13131.1 gi|557694603|ref|YP_008797657.1| - 1.5 8.6 10.1 0.18 11.6 1.5 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3951) FixQ PF05545.6 gi|557694603|ref|YP_008797657.1| - 2.2 7.9 13.0 1.9 8.1 1.8 2.3 2 0 0 2 2 2 0 Cbb3-type cytochrome oxidase component FixQ ABC2_membrane_2 PF12679.2 gi|557694603|ref|YP_008797657.1| - 2.5 6.9 10.1 3.1 6.5 7.0 1.0 1 0 0 1 1 1 0 ABC-2 family transporter protein SdpI PF13630.1 gi|557694603|ref|YP_008797657.1| - 2.9 7.6 6.4 4.3 7.0 4.4 1.3 1 0 0 1 1 1 0 SdpI/YhfL protein family PspC PF04024.7 gi|557694603|ref|YP_008797657.1| - 3.5 7.1 6.4 15 5.1 0.1 2.1 2 0 0 2 2 2 0 PspC domain DUF3302 PF11742.3 gi|557694603|ref|YP_008797657.1| - 5.2 6.9 6.5 6.1 6.7 0.3 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF3302) DUF4064 PF13273.1 gi|557694603|ref|YP_008797657.1| - 9.5 6.4 9.6 3.3e+02 1.4 6.7 2.0 1 1 0 1 1 1 0 Protein of unknown function (DUF4064) LexA_DNA_bind PF01726.11 gi|557694604|ref|YP_008797658.1| - 7.5e-05 22.2 0.0 0.00012 21.5 0.0 1.3 1 0 0 1 1 1 1 LexA DNA binding domain HTH_IclR PF09339.5 gi|557694604|ref|YP_008797658.1| - 0.015 14.8 0.0 0.028 13.9 0.0 1.5 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_20 PF12840.2 gi|557694604|ref|YP_008797658.1| - 0.043 13.6 0.0 0.083 12.7 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_5 PF01022.15 gi|557694604|ref|YP_008797658.1| - 0.15 11.7 0.0 0.23 11.1 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family Radical_SAM PF04055.16 gi|557694605|ref|YP_008797659.1| - 3.6e-13 50.0 0.0 3e-12 47.0 0.0 2.3 2 0 0 2 2 2 1 Radical SAM superfamily B12-binding PF02310.14 gi|557694605|ref|YP_008797659.1| - 0.0045 16.8 0.0 0.011 15.6 0.0 1.7 1 0 0 1 1 1 1 B12 binding domain PspC PF04024.7 gi|557694606|ref|YP_008797660.1| - 6e-16 57.6 0.3 6e-16 57.6 0.2 2.4 2 1 0 2 2 2 1 PspC domain MMgT PF10270.4 gi|557694606|ref|YP_008797660.1| - 0.67 10.4 4.8 0.26 11.7 0.5 2.2 2 0 0 2 2 2 0 Membrane magnesium transporter Homoserine_dh PF00742.14 gi|557694608|ref|YP_008797662.1| - 9.8e-53 178.4 0.1 1.9e-52 177.5 0.1 1.4 1 0 0 1 1 1 1 Homoserine dehydrogenase NAD_binding_3 PF03447.11 gi|557694608|ref|YP_008797662.1| - 1.9e-12 47.5 0.1 4.8e-12 46.2 0.0 1.7 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain ELFV_dehydrog PF00208.16 gi|557694608|ref|YP_008797662.1| - 0.00019 21.1 0.1 0.00049 19.7 0.1 1.8 1 1 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase Semialdhyde_dh PF01118.19 gi|557694608|ref|YP_008797662.1| - 0.068 13.4 1.6 0.81 10.0 1.1 2.4 1 1 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain AA_kinase PF00696.23 gi|557694609|ref|YP_008797663.1| - 7e-55 186.2 0.1 1.2e-54 185.3 0.0 1.4 1 0 0 1 1 1 1 Amino acid kinase family ACT_7 PF13840.1 gi|557694609|ref|YP_008797663.1| - 2.2e-24 84.7 1.0 2.3e-11 43.0 0.2 2.5 2 0 0 2 2 2 2 ACT domain ACT PF01842.20 gi|557694609|ref|YP_008797663.1| - 8.9e-23 79.3 4.1 7.3e-13 47.7 0.0 3.2 4 0 0 4 4 4 2 ACT domain ACT_6 PF13740.1 gi|557694609|ref|YP_008797663.1| - 0.00016 21.2 1.4 0.011 15.3 0.0 3.2 3 0 0 3 3 3 1 ACT domain LytR_C PF13399.1 gi|557694609|ref|YP_008797663.1| - 0.045 14.1 0.1 3.9 7.9 0.0 2.9 2 1 1 3 3 3 0 LytR cell envelope-related transcriptional attenuator DUF2283 PF10049.4 gi|557694612|ref|YP_008797666.1| - 1.3e-11 44.1 0.9 1.8e-11 43.7 0.6 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2283) SBP_bac_3 PF00497.15 gi|557694613|ref|YP_008797667.1| - 0.054 12.7 0.0 0.061 12.5 0.0 1.0 1 0 0 1 1 1 0 Bacterial extracellular solute-binding proteins, family 3 MS_channel PF00924.13 gi|557694615|ref|YP_008797669.1| - 5.4e-20 71.6 4.8 5.4e-20 71.6 3.3 1.9 2 0 0 2 2 2 1 Mechanosensitive ion channel Gly-zipper_OmpA PF13436.1 gi|557694615|ref|YP_008797669.1| - 2.9 7.5 8.7 5.7 6.6 6.0 1.4 1 0 0 1 1 1 0 Glycine-zipper containing OmpA-like membrane domain Peptidase_M50 PF02163.17 gi|557694616|ref|YP_008797670.1| - 5.2e-26 90.8 0.3 1.7e-25 89.1 0.2 1.8 1 1 0 1 1 1 1 Peptidase family M50 ATP_bind_3 PF01171.15 gi|557694617|ref|YP_008797671.1| - 2.5e-18 66.2 0.0 6.1e-18 64.9 0.0 1.7 1 1 0 1 1 1 1 PP-loop family tRNA_Me_trans PF03054.11 gi|557694617|ref|YP_008797671.1| - 8.7e-05 21.2 0.0 0.00012 20.7 0.0 1.2 1 0 0 1 1 1 1 tRNA methyl transferase ATP_bind_4 PF01902.12 gi|557694617|ref|YP_008797671.1| - 0.0038 16.6 0.1 0.0065 15.8 0.0 1.4 2 0 0 2 2 2 1 ATP-binding region PAPS_reduct PF01507.14 gi|557694617|ref|YP_008797671.1| - 0.015 15.1 0.0 0.032 14.0 0.0 1.6 2 0 0 2 2 2 0 Phosphoadenosine phosphosulfate reductase family Asn_synthase PF00733.16 gi|557694617|ref|YP_008797671.1| - 0.084 12.3 0.0 0.13 11.7 0.0 1.3 1 0 0 1 1 1 0 Asparagine synthase DUF2392 PF10288.4 gi|557694617|ref|YP_008797671.1| - 0.09 13.1 0.0 0.57 10.5 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2392) DUF2845 PF11006.3 gi|557694617|ref|YP_008797671.1| - 0.12 12.1 0.2 0.27 11.1 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2845) RecR PF02132.10 gi|557694617|ref|YP_008797671.1| - 1.7 8.1 13.9 0.049 13.0 1.0 3.7 4 0 0 4 4 4 0 RecR protein FdhD-NarQ PF02634.10 gi|557694618|ref|YP_008797672.1| - 3.5e-53 180.4 0.1 4e-53 180.2 0.1 1.0 1 0 0 1 1 1 1 FdhD/NarQ family MoeA_N PF03453.12 gi|557694619|ref|YP_008797673.1| - 2.4e-46 157.0 0.0 3.8e-46 156.3 0.0 1.3 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.19 gi|557694619|ref|YP_008797673.1| - 7e-33 113.0 0.2 1.3e-32 112.2 0.2 1.4 1 0 0 1 1 1 1 Probable molybdopterin binding domain MoeA_C PF03454.10 gi|557694619|ref|YP_008797673.1| - 1.9e-17 62.9 0.8 6.8e-17 61.1 0.0 2.3 3 0 0 3 3 3 1 MoeA C-terminal region (domain IV) PELOTA_1 PF15608.1 gi|557694619|ref|YP_008797673.1| - 0.079 12.7 0.0 0.17 11.6 0.0 1.5 1 0 0 1 1 1 0 PELOTA RNA binding domain MoeA_N PF03453.12 gi|557694620|ref|YP_008797674.1| - 1.3e-51 174.1 0.4 3e-51 172.9 0.3 1.6 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) PBP_like PF12727.2 gi|557694620|ref|YP_008797674.1| - 3.6e-51 172.8 0.0 6.4e-51 172.0 0.0 1.4 1 0 0 1 1 1 1 PBP superfamily domain MoCF_biosynth PF00994.19 gi|557694620|ref|YP_008797674.1| - 1e-24 86.5 0.1 2.4e-24 85.3 0.1 1.7 1 0 0 1 1 1 1 Probable molybdopterin binding domain MoeA_C PF03454.10 gi|557694620|ref|YP_008797674.1| - 1.3e-10 41.0 0.2 4.2e-10 39.4 0.0 2.0 2 0 0 2 2 2 1 MoeA C-terminal region (domain IV) Phosphonate-bd PF12974.2 gi|557694620|ref|YP_008797674.1| - 8.8e-06 25.2 0.0 1.9e-05 24.1 0.0 1.5 1 0 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein SBP_bac_11 PF13531.1 gi|557694620|ref|YP_008797674.1| - 1.5e-05 24.7 0.0 3.2e-05 23.6 0.0 1.5 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein PBP_like_2 PF12849.2 gi|557694620|ref|YP_008797674.1| - 0.034 13.6 0.0 0.056 12.9 0.0 1.4 1 0 0 1 1 1 0 PBP superfamily domain RdRP PF05183.7 gi|557694620|ref|YP_008797674.1| - 0.038 12.6 0.1 0.057 12.1 0.0 1.1 1 0 0 1 1 1 0 RNA dependent RNA polymerase NMT1 PF09084.6 gi|557694620|ref|YP_008797674.1| - 0.04 13.4 0.1 0.89 9.1 0.0 2.3 1 1 0 2 2 2 0 NMT1/THI5 like DUF1945 PF09178.5 gi|557694620|ref|YP_008797674.1| - 0.14 12.0 0.2 0.48 10.3 0.1 1.9 1 0 0 1 1 1 0 Domain of unknown function (DUF1945) Rhodanese PF00581.15 gi|557694621|ref|YP_008797675.1| - 1.6e-31 108.9 0.0 5.8e-15 55.6 0.0 2.1 2 0 0 2 2 2 2 Rhodanese-like domain Big_1 PF02369.11 gi|557694622|ref|YP_008797676.1| - 1.6e-08 34.3 0.0 2.5e-06 27.2 0.0 2.5 2 0 0 2 2 2 2 Bacterial Ig-like domain (group 1) DUF4480 PF13715.1 gi|557694622|ref|YP_008797676.1| - 0.00069 19.6 0.0 0.011 15.7 0.0 2.4 2 0 0 2 2 2 1 Domain of unknown function (DUF4480) CarboxypepD_reg PF13620.1 gi|557694622|ref|YP_008797676.1| - 0.0022 18.0 0.0 0.83 9.7 0.0 2.5 2 0 0 2 2 2 2 Carboxypeptidase regulatory-like domain FdhE PF04216.7 gi|557694623|ref|YP_008797677.1| - 2.6e-17 63.5 0.0 3.1e-17 63.2 0.0 1.0 1 0 0 1 1 1 1 Protein involved in formate dehydrogenase formation zf-ribbon_3 PF13248.1 gi|557694623|ref|YP_008797677.1| - 0.0003 19.8 3.0 0.0003 19.8 2.1 2.9 3 0 0 3 3 3 1 zinc-ribbon domain DZR PF12773.2 gi|557694623|ref|YP_008797677.1| - 0.0017 18.1 5.2 0.0032 17.2 1.1 2.2 1 1 1 2 2 2 2 Double zinc ribbon NMD3 PF04981.8 gi|557694623|ref|YP_008797677.1| - 0.092 11.8 1.6 0.094 11.8 0.3 1.6 2 0 0 2 2 2 0 NMD3 family zf-TFIIB PF13453.1 gi|557694623|ref|YP_008797677.1| - 0.37 10.0 5.1 1 8.5 0.4 2.8 2 1 0 2 2 2 0 Transcription factor zinc-finger Lar_restr_allev PF14354.1 gi|557694623|ref|YP_008797677.1| - 0.44 10.8 3.8 0.79 10.0 0.1 2.3 1 1 1 2 2 2 0 Restriction alleviation protein Lar HypA PF01155.14 gi|557694623|ref|YP_008797677.1| - 2 8.1 4.0 14 5.3 2.8 2.4 1 1 0 1 1 1 0 Hydrogenase expression/synthesis hypA family zf-FPG_IleRS PF06827.9 gi|557694623|ref|YP_008797677.1| - 2.1 8.0 11.6 2.6 7.7 0.9 3.1 3 0 0 3 3 3 0 Zinc finger found in FPG and IleRS OrfB_Zn_ribbon PF07282.6 gi|557694623|ref|YP_008797677.1| - 2.7 7.7 5.2 1.5 8.5 1.0 2.3 2 1 1 3 3 3 0 Putative transposase DNA-binding domain Prok-RING_1 PF14446.1 gi|557694623|ref|YP_008797677.1| - 3.2 7.5 7.7 1.7 8.4 0.3 2.6 3 0 0 3 3 3 0 Prokaryotic RING finger family 1 PhnA_Zn_Ribbon PF08274.7 gi|557694623|ref|YP_008797677.1| - 3.4 7.5 5.0 12 5.7 0.2 2.8 3 0 0 3 3 3 0 PhnA Zinc-Ribbon TFIIS_C PF01096.13 gi|557694623|ref|YP_008797677.1| - 6 6.5 8.7 41 3.9 0.1 3.7 4 0 0 4 4 4 0 Transcription factor S-II (TFIIS) TF_Zn_Ribbon PF08271.7 gi|557694623|ref|YP_008797677.1| - 7.8 5.9 11.8 3.2 7.1 0.5 3.2 2 1 1 3 3 3 0 TFIIB zinc-binding Molybdopterin PF00384.17 gi|557694624|ref|YP_008797678.1| - 5.7e-46 157.1 3.4 1.1e-40 139.7 0.0 2.7 2 1 0 2 2 2 2 Molybdopterin oxidoreductase Molydop_binding PF01568.16 gi|557694624|ref|YP_008797678.1| - 5e-15 55.2 0.0 1.3e-14 53.8 0.0 1.8 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.11 gi|557694624|ref|YP_008797678.1| - 2.9e-13 49.3 0.5 6.4e-13 48.2 0.3 1.6 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain Fer4_11 PF13247.1 gi|557694625|ref|YP_008797679.1| - 6.5e-25 86.8 10.5 7e-21 73.9 3.3 3.1 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|557694625|ref|YP_008797679.1| - 8.2e-20 70.9 0.0 1.6e-07 31.6 0.0 3.7 2 1 2 4 4 4 4 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|557694625|ref|YP_008797679.1| - 1.3e-13 50.3 15.9 0.017 15.6 0.0 4.7 4 1 0 4 4 4 3 4Fe-4S binding domain Fer4_9 PF13187.1 gi|557694625|ref|YP_008797679.1| - 2.7e-11 43.5 21.8 3e-07 30.6 4.1 3.2 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.22 gi|557694625|ref|YP_008797679.1| - 4e-10 38.8 33.8 7.2e-06 25.3 2.0 5.7 6 0 0 6 6 6 3 4Fe-4S binding domain Fer4_6 PF12837.2 gi|557694625|ref|YP_008797679.1| - 3.6e-09 36.0 35.3 0.00021 21.0 2.6 5.2 5 0 0 5 5 5 3 4Fe-4S binding domain Fer4_10 PF13237.1 gi|557694625|ref|YP_008797679.1| - 1.4e-08 34.3 24.5 0.0013 18.5 4.3 3.9 2 1 2 4 4 4 3 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|557694625|ref|YP_008797679.1| - 3e-07 29.9 37.1 3.7e-06 26.5 0.6 5.0 5 0 0 5 5 5 3 4Fe-4S binding domain Fer4_8 PF13183.1 gi|557694625|ref|YP_008797679.1| - 1.9e-05 24.5 19.3 0.00058 19.8 8.0 3.7 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|557694625|ref|YP_008797679.1| - 4.2e-05 23.3 27.0 0.00064 19.5 5.7 3.6 4 0 0 4 4 4 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|557694625|ref|YP_008797679.1| - 0.00017 22.2 20.0 0.76 10.5 1.5 5.0 3 1 2 5 5 5 3 4Fe-4S double cluster binding domain Fer4_4 PF12800.2 gi|557694625|ref|YP_008797679.1| - 0.00033 20.7 34.9 0.0054 16.9 1.9 4.9 5 0 0 5 5 5 2 4Fe-4S binding domain Fer4_15 PF13459.1 gi|557694625|ref|YP_008797679.1| - 0.026 15.0 24.5 0.044 14.3 0.4 4.0 3 1 0 3 3 2 0 4Fe-4S single cluster domain Fer4_17 PF13534.1 gi|557694625|ref|YP_008797679.1| - 0.058 13.7 1.0 0.058 13.7 0.7 4.5 3 1 3 6 6 6 0 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|557694625|ref|YP_008797679.1| - 0.12 12.7 19.4 0.43 11.0 0.6 4.6 4 1 0 4 4 3 0 4Fe-4S single cluster domain Fer4_18 PF13746.1 gi|557694625|ref|YP_008797679.1| - 0.5 10.8 24.6 0.45 10.9 0.2 4.4 3 1 0 3 3 3 0 4Fe-4S dicluster domain NrfD PF03916.9 gi|557694626|ref|YP_008797680.1| - 4.4e-17 62.4 30.8 1e-16 61.2 21.4 1.5 1 1 0 1 1 1 1 Polysulphide reductase, NrfD AF0941-like PF14591.1 gi|557694627|ref|YP_008797681.1| - 0.069 13.1 0.2 0.12 12.4 0.1 1.4 1 0 0 1 1 1 0 AF0941-like Ima1_N PF09779.4 gi|557694628|ref|YP_008797682.1| - 0.036 14.5 0.1 0.046 14.2 0.0 1.1 1 0 0 1 1 1 0 Ima1 N-terminal domain Rotamase PF00639.16 gi|557694628|ref|YP_008797682.1| - 0.047 14.4 0.8 4.3 8.1 0.0 2.2 1 1 1 2 2 2 0 PPIC-type PPIASE domain DUF4158 PF13700.1 gi|557694628|ref|YP_008797682.1| - 0.096 12.1 0.1 1.2 8.5 0.0 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4158) FTHFS PF01268.14 gi|557694628|ref|YP_008797682.1| - 0.1 10.5 0.3 0.12 10.3 0.2 1.0 1 0 0 1 1 1 0 Formate--tetrahydrofolate ligase DSS1_SEM1 PF05160.8 gi|557694628|ref|YP_008797682.1| - 1.8 8.4 4.9 0.4 10.4 0.2 2.2 2 0 0 2 2 2 0 DSS1/SEM1 family Big_3 PF07523.7 gi|557694629|ref|YP_008797683.1| - 0.097 12.7 0.0 0.24 11.5 0.0 1.6 1 0 0 1 1 1 0 Bacterial Ig-like domain (group 3) FAD_binding_7 PF03441.9 gi|557694630|ref|YP_008797684.1| - 8.4e-39 133.4 0.8 1.8e-38 132.3 0.6 1.6 1 1 0 1 1 1 1 FAD binding domain of DNA photolyase DNA_photolyase PF00875.13 gi|557694630|ref|YP_008797684.1| - 4.1e-12 46.1 0.1 8.4e-12 45.1 0.0 1.5 1 0 0 1 1 1 1 DNA photolyase Acetyltransf_10 PF13673.1 gi|557694631|ref|YP_008797685.1| - 8.1e-13 48.5 0.0 9.2e-13 48.3 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|557694631|ref|YP_008797685.1| - 1.1e-12 47.8 0.0 1.4e-12 47.4 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_4 PF13420.1 gi|557694631|ref|YP_008797685.1| - 1.6e-12 47.6 0.0 2e-12 47.3 0.0 1.0 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|557694631|ref|YP_008797685.1| - 2.5e-11 43.5 0.0 3.4e-11 43.1 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|557694631|ref|YP_008797685.1| - 5.6e-08 33.0 0.0 6.4e-08 32.8 0.0 1.0 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|557694631|ref|YP_008797685.1| - 6.1e-07 29.3 0.0 1.6e-06 27.9 0.0 1.8 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|557694631|ref|YP_008797685.1| - 1.8e-05 24.6 0.0 3.8e-05 23.6 0.0 1.6 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|557694631|ref|YP_008797685.1| - 3.3e-05 23.5 0.0 5.1e-05 22.9 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Malic_M PF03949.10 gi|557694632|ref|YP_008797686.1| - 3.9e-69 233.0 0.3 4.9e-69 232.7 0.2 1.1 1 0 0 1 1 1 1 Malic enzyme, NAD binding domain malic PF00390.14 gi|557694632|ref|YP_008797686.1| - 1.1e-26 93.5 0.0 3.3e-24 85.4 0.0 2.7 1 1 0 1 1 1 1 Malic enzyme, N-terminal domain DUF3391 PF11871.3 gi|557694632|ref|YP_008797686.1| - 0.024 14.8 0.1 0.046 13.9 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF3391) CCG PF02754.11 gi|557694633|ref|YP_008797687.1| - 4.3e-28 97.1 1.2 1.9e-16 59.8 0.0 2.9 3 0 0 3 3 3 2 Cysteine-rich domain Fer4_8 PF13183.1 gi|557694633|ref|YP_008797687.1| - 2.1e-12 46.8 3.3 2.1e-12 46.8 2.3 2.1 3 0 0 3 3 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|557694633|ref|YP_008797687.1| - 9.6e-10 38.5 3.9 9.6e-10 38.5 2.7 2.5 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|557694633|ref|YP_008797687.1| - 2e-08 34.5 11.3 0.00074 19.8 0.8 3.8 3 1 1 4 4 4 2 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|557694633|ref|YP_008797687.1| - 3e-08 33.8 2.1 3e-08 33.8 1.5 2.4 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|557694633|ref|YP_008797687.1| - 1.3e-07 31.2 8.1 1.3e-07 31.2 5.6 2.2 3 1 0 3 3 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|557694633|ref|YP_008797687.1| - 1.3e-06 27.9 14.2 0.0052 16.6 2.6 2.9 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|557694633|ref|YP_008797687.1| - 4e-06 27.0 9.4 4e-06 27.0 6.5 2.4 2 1 0 2 2 1 1 4Fe-4S dicluster domain Nitrate_red_gam PF02665.9 gi|557694633|ref|YP_008797687.1| - 3.7e-05 23.2 4.8 7.8e-05 22.1 3.3 1.6 1 0 0 1 1 1 1 Nitrate reductase gamma subunit Fer4 PF00037.22 gi|557694633|ref|YP_008797687.1| - 4.8e-05 22.7 17.5 0.0046 16.5 3.4 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.2 gi|557694633|ref|YP_008797687.1| - 7.2e-05 22.8 14.4 0.0026 17.9 1.4 3.4 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|557694633|ref|YP_008797687.1| - 0.0014 18.4 5.6 0.0014 18.4 3.9 3.0 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|557694633|ref|YP_008797687.1| - 0.0018 18.9 12.9 0.045 14.4 9.5 2.6 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_21 PF14697.1 gi|557694633|ref|YP_008797687.1| - 0.018 14.8 11.8 0.21 11.4 0.5 3.1 4 0 0 4 4 4 0 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|557694633|ref|YP_008797687.1| - 0.1 13.1 7.2 4.8 7.8 0.9 2.7 2 0 0 2 2 2 0 4Fe-4S single cluster domain E6 PF00518.12 gi|557694633|ref|YP_008797687.1| - 0.79 10.0 0.0 0.79 10.0 0.0 3.1 4 0 0 4 4 4 0 Early Protein (E6) ETF PF01012.16 gi|557694634|ref|YP_008797688.1| - 1.5e-40 138.6 0.5 4.4e-40 137.0 0.3 1.8 1 1 1 2 2 2 1 Electron transfer flavoprotein domain ETF_alpha PF00766.14 gi|557694635|ref|YP_008797689.1| - 9.6e-34 114.8 0.0 6.5e-33 112.2 0.0 2.2 2 0 0 2 2 2 1 Electron transfer flavoprotein FAD-binding domain ETF PF01012.16 gi|557694635|ref|YP_008797689.1| - 2e-18 66.6 3.9 2e-18 66.6 1.9 1.6 2 0 0 2 2 2 1 Electron transfer flavoprotein domain NTP_transf_3 PF12804.2 gi|557694636|ref|YP_008797690.1| - 5e-09 36.4 0.0 7e-09 35.9 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain CofC PF01983.11 gi|557694636|ref|YP_008797690.1| - 0.0094 14.9 0.0 0.022 13.7 0.0 1.6 2 0 0 2 2 2 1 Guanylyl transferase CofC like CTP_transf_3 PF02348.14 gi|557694636|ref|YP_008797690.1| - 0.09 12.3 0.0 0.2 11.2 0.0 1.7 1 1 0 1 1 1 0 Cytidylyltransferase AIRS_C PF02769.17 gi|557694637|ref|YP_008797691.1| - 1.4e-18 67.3 0.1 2.2e-18 66.7 0.0 1.3 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.19 gi|557694637|ref|YP_008797691.1| - 1.2e-08 35.0 0.0 2.4e-08 34.0 0.0 1.5 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain Nitroreductase PF00881.19 gi|557694638|ref|YP_008797692.1| - 3.2e-28 98.6 0.0 4.3e-28 98.1 0.0 1.2 1 0 0 1 1 1 1 Nitroreductase family TM1586_NiRdase PF14512.1 gi|557694638|ref|YP_008797692.1| - 0.00035 19.8 0.4 0.62 9.2 0.1 2.8 2 1 1 3 3 3 3 Putative TM nitroreductase DUF3323 PF11796.3 gi|557694638|ref|YP_008797692.1| - 0.1 11.9 0.0 0.12 11.6 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function N-terminus (DUF3323) Oxidored_molyb PF00174.14 gi|557694639|ref|YP_008797693.1| - 1.5e-32 112.3 0.0 1.8e-32 112.0 0.0 1.1 1 0 0 1 1 1 1 Oxidoreductase molybdopterin binding domain tRNA-synt_1 PF00133.17 gi|557694640|ref|YP_008797694.1| - 4.3e-181 602.9 0.2 6.1e-181 602.4 0.1 1.2 1 0 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.8 gi|557694640|ref|YP_008797694.1| - 3e-34 117.9 1.1 7.6e-34 116.6 0.7 1.7 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.6 gi|557694640|ref|YP_008797694.1| - 6.2e-23 81.0 2.6 2.9e-09 36.1 0.0 4.0 3 1 0 3 3 3 3 tRNA synthetases class I (M) tRNA-synt_1e PF01406.14 gi|557694640|ref|YP_008797694.1| - 1.2e-08 34.4 0.0 0.0042 16.2 0.0 2.4 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1f PF01921.13 gi|557694640|ref|YP_008797694.1| - 0.00089 18.0 0.0 0.0034 16.1 0.0 1.9 2 0 0 2 2 2 1 tRNA synthetases class I (K) tRNA-synt_1_2 PF13603.1 gi|557694640|ref|YP_008797694.1| - 0.038 13.2 0.0 0.088 12.0 0.0 1.6 1 0 0 1 1 1 0 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1d PF00750.14 gi|557694640|ref|YP_008797694.1| - 0.045 12.5 0.2 0.8 8.4 0.1 2.6 2 0 0 2 2 2 0 tRNA synthetases class I (R) Desulfoferrod_N PF06397.7 gi|557694640|ref|YP_008797694.1| - 0.33 10.3 1.9 18 4.7 0.0 2.5 2 0 0 2 2 2 0 Desulfoferrodoxin, N-terminal domain Zn-ribbon_8 PF09723.5 gi|557694640|ref|YP_008797694.1| - 0.7 9.8 7.9 14 5.6 0.1 4.5 5 0 0 5 5 5 0 Zinc ribbon domain DZR PF12773.2 gi|557694641|ref|YP_008797695.1| - 2e-08 33.9 6.8 2e-07 30.7 5.1 2.0 1 1 1 2 2 2 1 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|557694641|ref|YP_008797695.1| - 5.4e-07 28.6 9.2 2.8e-06 26.3 0.8 2.3 2 0 0 2 2 2 2 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|557694641|ref|YP_008797695.1| - 7.1e-07 28.5 4.7 0.00026 20.3 0.9 2.3 2 0 0 2 2 2 2 zinc-ribbon domain zf-NADH-PPase PF09297.6 gi|557694641|ref|YP_008797695.1| - 0.0035 16.8 7.3 1.9 8.0 0.1 3.4 3 0 0 3 3 3 1 NADH pyrophosphatase zinc ribbon domain zf-RanBP PF00641.13 gi|557694641|ref|YP_008797695.1| - 0.012 14.6 2.5 0.012 14.6 1.7 2.3 2 0 0 2 2 2 0 Zn-finger in Ran binding protein and others TF_Zn_Ribbon PF08271.7 gi|557694641|ref|YP_008797695.1| - 0.024 13.9 11.1 0.68 9.3 1.1 3.2 2 1 1 3 3 3 0 TFIIB zinc-binding Auto_anti-p27 PF06677.7 gi|557694641|ref|YP_008797695.1| - 0.029 14.1 3.1 0.029 14.1 2.2 2.9 2 1 1 3 3 3 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zf-C3HC4_3 PF13920.1 gi|557694641|ref|YP_008797695.1| - 0.03 14.0 7.6 0.13 11.9 2.9 2.7 2 1 1 3 3 3 0 Zinc finger, C3HC4 type (RING finger) DUF4428 PF14471.1 gi|557694641|ref|YP_008797695.1| - 0.069 12.9 0.9 0.069 12.9 0.6 3.2 4 0 0 4 4 4 0 Domain of unknown function (DUF4428) A2L_zn_ribbon PF08792.5 gi|557694641|ref|YP_008797695.1| - 0.13 11.7 6.1 0.33 10.4 0.0 3.2 4 0 0 4 4 4 0 A2L zinc ribbon domain Rad50_zn_hook PF04423.9 gi|557694641|ref|YP_008797695.1| - 0.15 11.5 0.3 0.15 11.5 0.2 2.3 2 1 0 2 2 2 0 Rad50 zinc hook motif DctQ PF04290.7 gi|557694641|ref|YP_008797695.1| - 0.25 11.1 1.7 0.34 10.6 1.2 1.2 1 0 0 1 1 1 0 Tripartite ATP-independent periplasmic transporters, DctQ component Nudix_N_2 PF14803.1 gi|557694641|ref|YP_008797695.1| - 0.36 10.5 10.4 8 6.2 0.6 3.5 3 0 0 3 3 3 0 Nudix N-terminal HypA PF01155.14 gi|557694641|ref|YP_008797695.1| - 0.4 10.3 4.5 3.9 7.2 3.1 2.2 1 1 0 1 1 1 0 Hydrogenase expression/synthesis hypA family OrfB_Zn_ribbon PF07282.6 gi|557694641|ref|YP_008797695.1| - 0.45 10.2 6.9 0.18 11.4 0.4 2.7 1 1 2 3 3 3 0 Putative transposase DNA-binding domain Ribosomal_L40e PF01020.12 gi|557694641|ref|YP_008797695.1| - 0.6 9.7 2.8 4.4 6.9 0.0 2.6 1 1 1 3 3 3 0 Ribosomal L40e family LIM PF00412.17 gi|557694641|ref|YP_008797695.1| - 0.65 10.1 3.6 0.94 9.6 0.1 2.6 2 1 1 3 3 3 0 LIM domain zf-C2HC5 PF06221.8 gi|557694641|ref|YP_008797695.1| - 0.74 9.6 8.9 27 4.6 5.5 2.5 1 1 0 1 1 1 0 Putative zinc finger motif, C2HC5-type DUF3040 PF11239.3 gi|557694641|ref|YP_008797695.1| - 1.1 9.3 0.0 1.1 9.3 0.0 3.1 3 0 0 3 3 3 0 Protein of unknown function (DUF3040) GATA PF00320.22 gi|557694641|ref|YP_008797695.1| - 1.2 8.5 3.6 89 2.5 0.2 2.5 1 1 1 2 2 2 0 GATA zinc finger FYVE PF01363.16 gi|557694641|ref|YP_008797695.1| - 1.6 8.6 5.0 8 6.4 3.1 2.2 1 1 1 2 2 2 0 FYVE zinc finger DNA_RNApol_7kD PF03604.8 gi|557694641|ref|YP_008797695.1| - 2.1 7.8 7.5 9.8 5.7 0.5 2.5 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit Cys_rich_CPCC PF14206.1 gi|557694641|ref|YP_008797695.1| - 2.5 7.7 6.1 1.6 8.3 1.8 2.1 1 1 1 2 2 2 0 Cysteine-rich CPCC zf-C3HC4_2 PF13923.1 gi|557694641|ref|YP_008797695.1| - 3 7.9 8.4 31 4.7 3.6 2.8 2 1 0 2 2 2 0 Zinc finger, C3HC4 type (RING finger) Prok-RING_1 PF14446.1 gi|557694641|ref|YP_008797695.1| - 3.2 7.5 11.3 1.1 9.0 1.0 3.1 2 1 0 3 3 3 0 Prokaryotic RING finger family 1 UPF0547 PF10571.4 gi|557694641|ref|YP_008797695.1| - 3.5 7.4 13.2 4.6 7.0 2.6 2.4 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 PhnA_Zn_Ribbon PF08274.7 gi|557694641|ref|YP_008797695.1| - 4.6 7.1 7.8 4.6 7.1 0.4 3.1 3 0 0 3 3 3 0 PhnA Zinc-Ribbon zf-C4H2 PF10146.4 gi|557694641|ref|YP_008797695.1| - 5.6 6.9 9.1 12 5.8 6.3 1.3 1 1 0 1 1 1 0 Zinc finger-containing protein zf-IS66 PF13005.2 gi|557694641|ref|YP_008797695.1| - 5.6 7.0 11.0 6.8 6.7 0.4 3.8 4 0 0 4 4 4 0 zinc-finger binding domain of transposase IS66 GCC2_GCC3 PF07699.8 gi|557694641|ref|YP_008797695.1| - 7.2 6.2 7.4 0.38 10.3 1.1 1.9 1 1 0 1 1 1 0 GCC2 and GCC3 DUF1610 PF07754.6 gi|557694641|ref|YP_008797695.1| - 8.4 6.6 11.4 36 4.5 0.0 3.3 3 0 0 3 3 3 0 Domain of unknown function (DUF1610) LSM PF01423.17 gi|557694642|ref|YP_008797696.1| - 9.3e-21 73.1 0.1 1e-20 72.9 0.0 1.0 1 0 0 1 1 1 1 LSM domain DUF4218 PF13960.1 gi|557694642|ref|YP_008797696.1| - 0.061 12.7 0.0 0.068 12.6 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4218) LSM14 PF12701.2 gi|557694642|ref|YP_008797696.1| - 0.064 13.0 0.0 0.08 12.7 0.0 1.2 1 0 0 1 1 1 0 Scd6-like Sm domain SM-ATX PF14438.1 gi|557694642|ref|YP_008797696.1| - 0.12 12.3 0.0 0.12 12.2 0.0 1.2 1 0 0 1 1 1 0 Ataxin 2 SM domain AdoMet_Synthase PF01941.14 gi|557694643|ref|YP_008797697.1| - 5.1e-150 499.3 1.9 6.2e-150 499.1 1.3 1.0 1 0 0 1 1 1 1 S-adenosylmethionine synthetase (AdoMet synthetase) DUF91 PF01939.11 gi|557694644|ref|YP_008797698.1| - 7.8e-58 195.3 0.1 9.2e-58 195.0 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF91 DUF3782 PF12644.2 gi|557694644|ref|YP_008797698.1| - 0.0076 16.0 0.1 0.013 15.3 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF3782) PDDEXK_1 PF12705.2 gi|557694644|ref|YP_008797698.1| - 0.07 12.5 0.0 0.088 12.1 0.0 1.1 1 0 0 1 1 1 0 PD-(D/E)XK nuclease superfamily PMT_2 PF13231.1 gi|557694645|ref|YP_008797699.1| - 6.4e-13 48.8 15.4 6.4e-13 48.8 10.7 2.8 3 0 0 3 3 3 1 Dolichyl-phosphate-mannose-protein mannosyltransferase PMT PF02366.13 gi|557694645|ref|YP_008797699.1| - 1e-10 41.3 18.4 1e-10 41.3 12.7 3.7 2 2 0 2 2 2 1 Dolichyl-phosphate-mannose-protein mannosyltransferase DUF1614 PF07758.6 gi|557694645|ref|YP_008797699.1| - 0.068 12.9 0.0 0.068 12.9 0.0 2.4 3 0 0 3 3 3 0 Protein of unknown function (DUF1614) Radical_SAM PF04055.16 gi|557694646|ref|YP_008797700.1| - 2.5e-21 76.5 0.0 6.7e-21 75.1 0.0 1.7 1 0 0 1 1 1 1 Radical SAM superfamily Acetyltransf_1 PF00583.19 gi|557694646|ref|YP_008797700.1| - 9.5e-08 31.9 0.5 3.5e-07 30.1 0.1 2.3 2 0 0 2 2 2 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|557694646|ref|YP_008797700.1| - 0.068 13.2 0.1 0.22 11.6 0.0 1.9 2 0 0 2 2 2 0 Acetyltransferase (GNAT) domain Bac_luciferase PF00296.15 gi|557694647|ref|YP_008797701.1| - 3.3e-35 121.6 2.3 2.5e-34 118.8 1.6 1.9 1 1 0 1 1 1 1 Luciferase-like monooxygenase Abhydrolase_6 PF12697.2 gi|557694648|ref|YP_008797702.1| - 9.7e-39 133.5 0.0 1.1e-38 133.3 0.0 1.0 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|557694648|ref|YP_008797702.1| - 1.2e-20 74.0 0.0 3.8e-20 72.4 0.0 1.7 1 1 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_5 PF12695.2 gi|557694648|ref|YP_008797702.1| - 1.3e-20 73.6 0.0 1.1e-19 70.6 0.0 2.0 1 1 0 1 1 1 1 Alpha/beta hydrolase family DLH PF01738.13 gi|557694648|ref|YP_008797702.1| - 1e-06 28.1 0.1 0.0056 15.9 0.0 2.9 2 1 1 3 3 3 2 Dienelactone hydrolase family Ser_hydrolase PF06821.8 gi|557694648|ref|YP_008797702.1| - 1.3e-06 28.1 0.0 0.047 13.2 0.0 2.2 2 0 0 2 2 2 2 Serine hydrolase Ndr PF03096.9 gi|557694648|ref|YP_008797702.1| - 0.00011 20.8 0.0 0.00012 20.6 0.0 1.2 1 0 0 1 1 1 1 Ndr family FSH1 PF03959.8 gi|557694648|ref|YP_008797702.1| - 0.0003 20.2 0.0 0.0056 16.1 0.0 2.4 2 1 0 2 2 2 1 Serine hydrolase (FSH1) Peptidase_S9 PF00326.16 gi|557694648|ref|YP_008797702.1| - 0.00069 18.8 0.0 0.1 11.8 0.0 2.2 2 0 0 2 2 2 1 Prolyl oligopeptidase family UPF0227 PF05728.7 gi|557694648|ref|YP_008797702.1| - 0.001 18.7 0.0 0.0022 17.7 0.0 1.5 2 0 0 2 2 2 1 Uncharacterised protein family (UPF0227) Esterase PF00756.15 gi|557694648|ref|YP_008797702.1| - 0.0017 17.8 0.1 0.0043 16.4 0.0 1.6 2 0 0 2 2 2 1 Putative esterase Abhydrolase_3 PF07859.8 gi|557694648|ref|YP_008797702.1| - 0.0031 17.1 0.0 0.005 16.4 0.0 1.3 1 0 0 1 1 1 1 alpha/beta hydrolase fold BAAT_C PF08840.6 gi|557694648|ref|YP_008797702.1| - 0.0039 16.9 0.0 0.014 15.1 0.0 1.8 2 0 0 2 2 2 1 BAAT / Acyl-CoA thioester hydrolase C terminal PGAP1 PF07819.8 gi|557694648|ref|YP_008797702.1| - 0.0051 16.4 0.3 0.081 12.4 0.1 2.1 2 0 0 2 2 2 1 PGAP1-like protein Abhydrolase_4 PF08386.5 gi|557694648|ref|YP_008797702.1| - 0.0055 16.5 0.0 0.0087 15.9 0.0 1.3 1 0 0 1 1 1 1 TAP-like protein Thioesterase PF00975.15 gi|557694648|ref|YP_008797702.1| - 0.0064 16.7 0.0 0.019 15.1 0.0 2.0 1 1 1 2 2 2 1 Thioesterase domain DUF915 PF06028.6 gi|557694648|ref|YP_008797702.1| - 0.013 14.6 0.0 0.088 11.8 0.0 2.1 2 0 0 2 2 2 0 Alpha/beta hydrolase of unknown function (DUF915) DUF2305 PF10230.4 gi|557694648|ref|YP_008797702.1| - 0.016 14.6 0.0 0.029 13.8 0.0 1.4 2 0 0 2 2 2 0 Uncharacterised conserved protein (DUF2305) DUF2048 PF09752.4 gi|557694648|ref|YP_008797702.1| - 0.018 13.9 0.1 0.041 12.7 0.1 1.7 2 1 0 2 2 2 0 Uncharacterized conserved protein (DUF2048) Lipase_3 PF01764.20 gi|557694648|ref|YP_008797702.1| - 0.054 13.0 0.1 0.095 12.3 0.0 1.3 1 0 0 1 1 1 0 Lipase (class 3) Abhydrolase_2 PF02230.11 gi|557694648|ref|YP_008797702.1| - 0.097 12.0 0.1 3 7.2 0.0 2.6 3 0 0 3 3 3 0 Phospholipase/Carboxylesterase Chlorophyllase2 PF12740.2 gi|557694648|ref|YP_008797702.1| - 0.12 11.1 0.2 0.47 9.2 0.0 2.0 2 1 0 2 2 2 0 Chlorophyllase enzyme DUF1057 PF06342.7 gi|557694648|ref|YP_008797702.1| - 0.13 11.0 0.0 0.57 8.9 0.0 1.7 2 0 0 2 2 2 0 Alpha/beta hydrolase of unknown function (DUF1057) Hexapep PF00132.19 gi|557694649|ref|YP_008797703.1| - 4.6e-24 82.7 25.4 3.4e-08 32.6 3.7 6.1 3 1 3 6 6 6 6 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|557694649|ref|YP_008797703.1| - 5e-11 41.9 24.3 5.7e-06 25.7 3.5 5.4 3 1 2 6 6 6 5 Hexapeptide repeat of succinyl-transferase SUI1 PF01253.17 gi|557694650|ref|YP_008797704.1| - 2.5e-20 72.0 0.6 2.9e-20 71.8 0.4 1.1 1 0 0 1 1 1 1 Translation initiation factor SUI1 DTW PF03942.10 gi|557694650|ref|YP_008797704.1| - 0.004 16.4 1.2 0.0052 16.0 0.9 1.2 1 0 0 1 1 1 1 DTW domain TFIIB PF00382.14 gi|557694651|ref|YP_008797705.1| - 1.9e-31 107.6 5.8 6.8e-16 57.8 0.2 2.3 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.7 gi|557694651|ref|YP_008797705.1| - 1.1e-14 53.4 1.8 1.8e-14 52.7 1.3 1.4 1 0 0 1 1 1 1 TFIIB zinc-binding Cyclin_N PF00134.18 gi|557694651|ref|YP_008797705.1| - 6.8e-07 28.9 0.8 0.0012 18.3 0.1 2.1 2 0 0 2 2 2 2 Cyclin, N-terminal domain HTH_11 PF08279.7 gi|557694651|ref|YP_008797705.1| - 3.6e-06 26.5 0.1 0.0028 17.2 0.0 2.6 2 0 0 2 2 2 1 HTH domain HTH_AsnC-type PF13404.1 gi|557694651|ref|YP_008797705.1| - 1.7e-05 24.2 0.0 0.088 12.3 0.0 2.8 2 0 0 2 2 2 2 AsnC-type helix-turn-helix domain HTH_23 PF13384.1 gi|557694651|ref|YP_008797705.1| - 8.4e-05 22.0 3.2 0.017 14.7 0.0 3.5 3 0 0 3 3 3 1 Homeodomain-like domain RNA_POL_M_15KD PF02150.11 gi|557694651|ref|YP_008797705.1| - 0.0001 21.9 0.4 0.00024 20.7 0.2 1.6 1 0 0 1 1 1 1 RNA polymerases M/15 Kd subunit HTH_3 PF01381.17 gi|557694651|ref|YP_008797705.1| - 0.00028 20.6 0.1 0.0065 16.2 0.0 2.6 2 0 0 2 2 2 1 Helix-turn-helix HTH_24 PF13412.1 gi|557694651|ref|YP_008797705.1| - 0.00074 18.8 0.0 0.62 9.4 0.0 2.6 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding zinc_ribbon_2 PF13240.1 gi|557694651|ref|YP_008797705.1| - 0.0021 17.4 0.5 0.0043 16.4 0.4 1.5 1 0 0 1 1 1 1 zinc-ribbon domain TetR_N PF00440.18 gi|557694651|ref|YP_008797705.1| - 0.004 16.7 0.1 0.025 14.2 0.0 2.4 2 1 0 2 2 2 1 Bacterial regulatory proteins, tetR family Sigma70_r4_2 PF08281.7 gi|557694651|ref|YP_008797705.1| - 0.0043 16.4 0.1 0.043 13.2 0.0 2.4 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_Crp_2 PF13545.1 gi|557694651|ref|YP_008797705.1| - 0.0048 16.6 0.1 0.14 11.9 0.0 2.4 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain LacI PF00356.16 gi|557694651|ref|YP_008797705.1| - 0.0053 16.3 0.1 0.13 11.9 0.0 2.6 2 0 0 2 2 2 1 Bacterial regulatory proteins, lacI family HTH_Tnp_ISL3 PF13542.1 gi|557694651|ref|YP_008797705.1| - 0.0086 15.2 0.1 0.21 10.7 0.0 2.7 2 0 0 2 2 2 1 Helix-turn-helix domain of transposase family ISL3 HTH_Mga PF08280.6 gi|557694651|ref|YP_008797705.1| - 0.0096 15.6 0.0 4.6 7.0 0.0 2.6 3 0 0 3 3 2 0 M protein trans-acting positive regulator (MGA) HTH domain Ribosomal_S27e PF01667.12 gi|557694651|ref|YP_008797705.1| - 0.0098 15.4 1.5 0.024 14.1 1.0 1.6 1 0 0 1 1 1 1 Ribosomal protein S27 Sigma70_r4 PF04545.11 gi|557694651|ref|YP_008797705.1| - 0.01 15.1 0.2 0.049 12.9 0.0 2.2 2 0 0 2 2 2 0 Sigma-70, region 4 HTH_28 PF13518.1 gi|557694651|ref|YP_008797705.1| - 0.011 15.7 0.4 1.6 8.8 0.0 3.4 3 0 0 3 3 3 0 Helix-turn-helix domain GntR PF00392.16 gi|557694651|ref|YP_008797705.1| - 0.015 14.7 0.0 1.2 8.5 0.0 2.6 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family Rrf2 PF02082.15 gi|557694651|ref|YP_008797705.1| - 0.03 14.4 0.8 0.76 9.9 0.0 2.8 3 0 0 3 3 3 0 Transcriptional regulator IBR PF01485.16 gi|557694651|ref|YP_008797705.1| - 0.032 14.0 0.3 0.057 13.3 0.2 1.4 1 0 0 1 1 1 0 IBR domain zf-ribbon_3 PF13248.1 gi|557694651|ref|YP_008797705.1| - 0.052 12.7 1.5 0.58 9.4 1.1 2.2 1 1 1 2 2 2 0 zinc-ribbon domain DZR PF12773.2 gi|557694651|ref|YP_008797705.1| - 0.052 13.3 0.3 0.11 12.3 0.2 1.5 1 0 0 1 1 1 0 Double zinc ribbon OrfB_Zn_ribbon PF07282.6 gi|557694651|ref|YP_008797705.1| - 0.059 13.0 0.3 0.16 11.6 0.2 1.7 1 0 0 1 1 1 0 Putative transposase DNA-binding domain zf-C4_Topoisom PF01396.14 gi|557694651|ref|YP_008797705.1| - 0.06 12.8 0.4 0.14 11.7 0.3 1.6 1 0 0 1 1 1 0 Topoisomerase DNA binding C4 zinc finger HypA PF01155.14 gi|557694651|ref|YP_008797705.1| - 0.069 12.8 1.7 4.4 7.0 0.2 3.0 3 1 0 3 3 3 0 Hydrogenase expression/synthesis hypA family GerE PF00196.14 gi|557694651|ref|YP_008797705.1| - 0.074 12.3 0.1 3.7 6.9 0.0 2.7 2 0 0 2 2 2 0 Bacterial regulatory proteins, luxR family HTH_31 PF13560.1 gi|557694651|ref|YP_008797705.1| - 0.097 12.8 0.6 1.1 9.5 0.0 2.6 2 2 0 2 2 2 0 Helix-turn-helix domain Cyclin_C PF02984.14 gi|557694651|ref|YP_008797705.1| - 0.097 12.6 0.5 4.1 7.3 0.0 2.6 1 1 1 2 2 2 0 Cyclin, C-terminal domain HTH_38 PF13936.1 gi|557694651|ref|YP_008797705.1| - 0.11 12.0 4.7 6.6 6.3 0.0 3.3 4 0 0 4 4 3 0 Helix-turn-helix domain Rubredoxin PF00301.15 gi|557694651|ref|YP_008797705.1| - 0.12 12.2 1.3 0.78 9.6 0.1 2.2 2 0 0 2 2 2 0 Rubredoxin Auto_anti-p27 PF06677.7 gi|557694651|ref|YP_008797705.1| - 0.17 11.6 3.0 0.18 11.5 0.7 2.1 2 0 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) YhfH PF14149.1 gi|557694651|ref|YP_008797705.1| - 0.2 11.4 1.2 21 4.9 0.1 2.5 2 0 0 2 2 2 0 YhfH-like protein DNA_RNApol_7kD PF03604.8 gi|557694651|ref|YP_008797705.1| - 1.2 8.6 4.9 0.33 10.4 0.8 2.0 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit tRNA-synt_1e PF01406.14 gi|557694652|ref|YP_008797706.1| - 2e-110 368.6 0.0 3e-110 368.0 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class I (C) catalytic domain DALR_2 PF09190.6 gi|557694652|ref|YP_008797706.1| - 1.3e-16 60.5 0.1 4e-16 58.9 0.0 1.9 2 0 0 2 2 2 1 DALR domain tRNA-synt_1g PF09334.6 gi|557694652|ref|YP_008797706.1| - 1.7e-09 36.8 0.1 0.00038 19.2 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (M) tRNA-synt_1 PF00133.17 gi|557694652|ref|YP_008797706.1| - 7.6e-09 34.1 0.0 1.4e-05 23.3 0.0 2.3 2 0 0 2 2 2 2 tRNA synthetases class I (I, L, M and V) tRNA-synt_1f PF01921.13 gi|557694652|ref|YP_008797706.1| - 2.4e-06 26.4 0.2 1.3e-05 24.1 0.0 2.0 2 0 0 2 2 2 1 tRNA synthetases class I (K) tRNA-synt_1d PF00750.14 gi|557694652|ref|YP_008797706.1| - 0.00073 18.4 1.1 0.069 11.9 0.2 2.8 2 1 0 3 3 3 2 tRNA synthetases class I (R) DUF1949 PF09186.6 gi|557694652|ref|YP_008797706.1| - 0.12 11.9 0.0 0.5 10.0 0.0 2.1 1 0 0 1 1 1 0 Domain of unknown function (DUF1949) NTP_transferase PF00483.18 gi|557694653|ref|YP_008797707.1| - 1.1e-37 129.6 0.0 1.5e-37 129.2 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.2 gi|557694653|ref|YP_008797707.1| - 2.4e-10 40.7 0.0 3.4e-10 40.2 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.14 gi|557694653|ref|YP_008797707.1| - 0.0083 15.6 0.0 0.014 14.9 0.0 1.3 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase PB1 PF00564.19 gi|557694653|ref|YP_008797707.1| - 0.096 12.3 0.1 0.32 10.6 0.0 1.8 2 0 0 2 2 2 0 PB1 domain DUF4224 PF13986.1 gi|557694653|ref|YP_008797707.1| - 0.1 12.1 0.0 0.21 11.1 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4224) Acetyltransf_1 PF00583.19 gi|557694654|ref|YP_008797708.1| - 1.9e-19 69.4 0.2 2.5e-19 69.0 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|557694654|ref|YP_008797708.1| - 1.9e-12 47.1 0.1 2.8e-12 46.6 0.1 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|557694654|ref|YP_008797708.1| - 5.9e-12 45.7 0.0 9.2e-12 45.1 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|557694654|ref|YP_008797708.1| - 2.1e-09 36.9 0.1 5.5e-09 35.6 0.1 1.7 1 1 0 1 1 1 1 FR47-like protein Acetyltransf_8 PF13523.1 gi|557694654|ref|YP_008797708.1| - 3.5e-09 36.7 0.1 4.7e-09 36.3 0.1 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|557694654|ref|YP_008797708.1| - 1.2e-08 34.8 0.0 2e-08 34.1 0.0 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|557694654|ref|YP_008797708.1| - 2.8e-06 27.3 0.1 3.7e-06 26.9 0.0 1.3 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|557694654|ref|YP_008797708.1| - 5.5e-05 23.3 0.0 8.3e-05 22.7 0.0 1.3 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|557694654|ref|YP_008797708.1| - 0.091 12.6 0.0 0.17 11.7 0.0 1.5 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase Metallophos PF00149.23 gi|557694655|ref|YP_008797709.1| - 2.9e-09 36.6 2.7 1.5e-08 34.2 1.8 1.9 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.2 gi|557694655|ref|YP_008797709.1| - 8.5e-06 25.6 0.1 1.6e-05 24.7 0.0 1.4 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain 4HBT PF03061.17 gi|557694656|ref|YP_008797710.1| - 8.8e-25 86.6 4.7 4e-12 46.0 0.2 2.2 2 0 0 2 2 2 2 Thioesterase superfamily 4HBT_2 PF13279.1 gi|557694656|ref|YP_008797710.1| - 0.013 15.9 0.0 0.24 11.8 0.0 2.2 2 0 0 2 2 2 0 Thioesterase-like superfamily MaoC_dehydratas PF01575.14 gi|557694656|ref|YP_008797710.1| - 0.018 14.3 0.2 0.73 9.2 0.0 2.3 2 0 0 2 2 2 0 MaoC like domain X_fast-SP_rel PF06669.6 gi|557694656|ref|YP_008797710.1| - 0.059 13.3 0.1 0.16 11.9 0.1 1.7 1 0 0 1 1 1 0 Xylella fastidiosa surface protein related Bac_luciferase PF00296.15 gi|557694657|ref|YP_008797711.1| - 6.5e-55 186.4 0.4 8.2e-55 186.0 0.3 1.1 1 0 0 1 1 1 1 Luciferase-like monooxygenase PEP-utilizers_C PF02896.13 gi|557694658|ref|YP_008797712.1| - 2e-102 342.0 0.1 3.1e-102 341.4 0.1 1.3 1 0 0 1 1 1 1 PEP-utilising enzyme, TIM barrel domain PPDK_N PF01326.14 gi|557694658|ref|YP_008797712.1| - 1.8e-59 201.4 0.0 9.4e-59 199.0 0.0 2.1 1 1 0 1 1 1 1 Pyruvate phosphate dikinase, PEP/pyruvate binding domain PEP-utilizers PF00391.18 gi|557694658|ref|YP_008797712.1| - 2.8e-23 81.2 1.6 5.9e-23 80.2 1.1 1.6 1 0 0 1 1 1 1 PEP-utilising enzyme, mobile domain Phage_connect_1 PF05135.8 gi|557694658|ref|YP_008797712.1| - 0.01 15.9 0.0 0.027 14.6 0.0 1.6 1 0 0 1 1 1 0 Phage gp6-like head-tail connector protein Penicillinase_R PF03965.11 gi|557694659|ref|YP_008797713.1| - 0.00032 20.7 0.0 0.00045 20.3 0.0 1.2 1 0 0 1 1 1 1 Penicillinase repressor HTH_IclR PF09339.5 gi|557694659|ref|YP_008797713.1| - 0.011 15.3 0.0 0.027 14.0 0.0 1.7 1 0 0 1 1 1 0 IclR helix-turn-helix domain PaaX PF07848.7 gi|557694659|ref|YP_008797713.1| - 0.015 15.3 0.4 0.038 13.9 0.3 1.6 1 0 0 1 1 1 0 PaaX-like protein HTH_27 PF13463.1 gi|557694659|ref|YP_008797713.1| - 0.071 13.4 0.0 0.16 12.2 0.0 1.6 1 0 0 1 1 1 0 Winged helix DNA-binding domain MarR PF01047.17 gi|557694659|ref|YP_008797713.1| - 0.13 11.9 0.0 0.35 10.5 0.0 1.7 2 0 0 2 2 2 0 MarR family PCNA_N PF00705.13 gi|557694660|ref|YP_008797714.1| - 3.7e-18 65.2 0.0 1.8e-17 63.0 0.0 1.9 2 0 0 2 2 2 1 Proliferating cell nuclear antigen, N-terminal domain PCNA_C PF02747.10 gi|557694660|ref|YP_008797714.1| - 4.1e-08 33.1 0.3 4e-07 30.0 0.1 2.1 2 0 0 2 2 2 1 Proliferating cell nuclear antigen, C-terminal domain Rad1 PF02144.11 gi|557694660|ref|YP_008797714.1| - 1e-05 24.4 0.3 4.4e-05 22.3 0.2 1.7 1 1 0 1 1 1 1 Repair protein Rad1/Rec1/Rad17 DAP_B PF07930.7 gi|557694660|ref|YP_008797714.1| - 0.028 14.1 0.1 0.1 12.3 0.0 1.9 2 0 0 2 2 2 0 D-aminopeptidase, domain B Rad9 PF04139.8 gi|557694660|ref|YP_008797714.1| - 0.058 12.5 0.0 0.13 11.3 0.0 1.7 1 1 0 1 1 1 0 Rad9 Peptidase_M50 PF02163.17 gi|557694661|ref|YP_008797715.1| - 3e-18 65.4 6.7 2.1e-13 49.6 1.3 2.5 1 1 1 2 2 2 2 Peptidase family M50 LPAM_1 PF08139.7 gi|557694661|ref|YP_008797715.1| - 1.2 9.4 0.0 1.2 9.4 0.0 3.7 3 1 0 3 3 3 0 Prokaryotic membrane lipoprotein lipid attachment site GFO_IDH_MocA_C PF02894.12 gi|557694662|ref|YP_008797716.1| - 0.083 12.6 0.0 0.15 11.8 0.0 1.4 1 0 0 1 1 1 0 Oxidoreductase family, C-terminal alpha/beta domain Nitroreductase PF00881.19 gi|557694663|ref|YP_008797717.1| - 2.1e-26 92.7 0.0 2.5e-26 92.4 0.0 1.1 1 0 0 1 1 1 1 Nitroreductase family AMO PF02461.11 gi|557694663|ref|YP_008797717.1| - 0.043 13.5 0.0 0.07 12.8 0.0 1.2 1 0 0 1 1 1 0 Ammonia monooxygenase TM1586_NiRdase PF14512.1 gi|557694663|ref|YP_008797717.1| - 0.14 11.3 0.0 2.5 7.2 0.0 2.1 2 0 0 2 2 2 0 Putative TM nitroreductase UPF0052 PF01933.13 gi|557694664|ref|YP_008797718.1| - 6.9e-47 160.2 0.0 8.2e-47 159.9 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein family UPF0052 CofC PF01983.11 gi|557694665|ref|YP_008797719.1| - 9.9e-20 70.4 0.0 1.3e-19 70.0 0.0 1.1 1 0 0 1 1 1 1 Guanylyl transferase CofC like NTP_transf_3 PF12804.2 gi|557694665|ref|YP_008797719.1| - 0.002 18.2 0.0 0.0026 17.8 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain EcsC PF12787.2 gi|557694665|ref|YP_008797719.1| - 0.0069 15.8 0.0 0.011 15.1 0.0 1.2 1 0 0 1 1 1 1 EcsC protein family UPF0197 PF05251.7 gi|557694666|ref|YP_008797720.1| - 0.033 14.4 3.0 0.094 13.0 0.0 2.4 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0197) Beta-Casp PF10996.3 gi|557694667|ref|YP_008797721.1| - 1.8e-16 60.1 0.0 1.1e-15 57.6 0.0 2.1 2 0 0 2 2 2 1 Beta-Casp domain Lactamase_B_2 PF12706.2 gi|557694667|ref|YP_008797721.1| - 1.8e-14 53.7 0.1 4.7e-14 52.3 0.0 1.7 2 0 0 2 2 2 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|557694667|ref|YP_008797721.1| - 7.5e-14 51.8 0.1 1.5e-13 50.8 0.1 1.5 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily RMMBL PF07521.7 gi|557694667|ref|YP_008797721.1| - 3.9e-11 42.5 0.0 8.2e-11 41.5 0.0 1.6 1 0 0 1 1 1 1 RNA-metabolising metallo-beta-lactamase Lactamase_B_3 PF13483.1 gi|557694667|ref|YP_008797721.1| - 0.00053 19.7 0.2 0.0057 16.3 0.0 2.3 1 1 1 2 2 2 1 Beta-lactamase superfamily domain Methyltransf_26 PF13659.1 gi|557694667|ref|YP_008797721.1| - 0.1 12.6 0.0 0.17 11.8 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain DUF2353 PF09789.4 gi|557694667|ref|YP_008797721.1| - 0.15 11.2 0.0 0.26 10.5 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized coiled-coil protein (DUF2353) DS PF01916.12 gi|557694669|ref|YP_008797723.1| - 6.4e-63 212.6 0.0 7.5e-63 212.4 0.0 1.0 1 0 0 1 1 1 1 Deoxyhypusine synthase AA_kinase PF00696.23 gi|557694670|ref|YP_008797724.1| - 5.6e-49 166.8 0.4 1.1e-48 165.9 0.1 1.5 2 0 0 2 2 2 1 Amino acid kinase family ACT_7 PF13840.1 gi|557694670|ref|YP_008797724.1| - 8.4e-08 31.6 1.7 5.2e-07 29.0 0.1 2.5 2 0 0 2 2 2 1 ACT domain ACT PF01842.20 gi|557694670|ref|YP_008797724.1| - 0.017 14.6 0.3 0.12 11.9 0.0 2.6 4 0 0 4 4 4 0 ACT domain DUF2007 PF09413.5 gi|557694670|ref|YP_008797724.1| - 0.027 14.2 0.0 0.075 12.8 0.0 1.8 1 0 0 1 1 1 0 Domain of unknown function (DUF2007) Ald_Xan_dh_C2 PF02738.13 gi|557694671|ref|YP_008797725.1| - 2.5e-136 455.2 0.0 3e-136 454.9 0.0 1.0 1 0 0 1 1 1 1 Molybdopterin-binding domain of aldehyde dehydrogenase Ald_Xan_dh_C PF01315.17 gi|557694671|ref|YP_008797725.1| - 2.3e-29 101.6 0.3 5.3e-29 100.5 0.0 1.8 2 0 0 2 2 2 1 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain UvdE PF03851.9 gi|557694671|ref|YP_008797725.1| - 0.027 13.4 0.0 0.048 12.6 0.0 1.3 1 0 0 1 1 1 0 UV-endonuclease UvdE FAD_binding_5 PF00941.16 gi|557694672|ref|YP_008797726.1| - 2.7e-46 157.1 0.1 4e-46 156.5 0.1 1.2 1 0 0 1 1 1 1 FAD binding domain in molybdopterin dehydrogenase CO_deh_flav_C PF03450.12 gi|557694672|ref|YP_008797726.1| - 1.7e-26 92.1 0.0 3.1e-26 91.2 0.0 1.4 1 0 0 1 1 1 1 CO dehydrogenase flavoprotein C-terminal domain Fer2_2 PF01799.15 gi|557694673|ref|YP_008797727.1| - 7.5e-26 89.8 0.1 7.5e-26 89.8 0.1 1.5 2 0 0 2 2 2 1 [2Fe-2S] binding domain Fer2 PF00111.22 gi|557694673|ref|YP_008797727.1| - 1.2e-08 34.5 0.7 1.2e-08 34.5 0.5 2.2 1 1 1 2 2 2 1 2Fe-2S iron-sulfur cluster binding domain Fer2_3 PF13085.1 gi|557694673|ref|YP_008797727.1| - 6.1e-05 22.8 0.6 9.7e-05 22.1 0.1 1.6 1 1 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer2_4 PF13510.1 gi|557694673|ref|YP_008797727.1| - 0.00011 21.8 0.6 0.00066 19.4 0.2 2.3 1 1 1 2 2 2 1 2Fe-2S iron-sulfur cluster binding domain HEAT_2 PF13646.1 gi|557694674|ref|YP_008797728.1| - 4.5e-52 174.2 3.0 9e-18 64.3 0.1 2.4 1 1 3 4 4 4 4 HEAT repeats HEAT PF02985.17 gi|557694674|ref|YP_008797728.1| - 4.4e-14 51.2 0.1 0.0071 16.3 0.0 4.1 4 0 0 4 4 4 3 HEAT repeat HEAT_PBS PF03130.11 gi|557694674|ref|YP_008797728.1| - 1.2e-13 50.1 1.3 5.1e-05 23.3 0.0 3.7 4 0 0 4 4 4 3 PBS lyase HEAT-like repeat HEAT_EZ PF13513.1 gi|557694674|ref|YP_008797728.1| - 8.1e-11 42.0 0.3 0.0024 18.3 0.0 3.6 2 1 2 4 4 4 3 HEAT-like repeat Adaptin_N PF01602.15 gi|557694674|ref|YP_008797728.1| - 0.00028 19.3 0.0 0.0026 16.1 0.0 1.9 1 1 1 2 2 2 2 Adaptin N terminal region Arm PF00514.18 gi|557694674|ref|YP_008797728.1| - 0.013 15.3 0.0 5.9 6.8 0.0 3.5 4 0 0 4 4 4 0 Armadillo/beta-catenin-like repeat Cnd1 PF12717.2 gi|557694674|ref|YP_008797728.1| - 0.067 13.0 0.0 9.8 5.9 0.0 3.1 2 1 0 2 2 2 0 non-SMC mitotic condensation complex subunit 1 ThiS PF02597.15 gi|557694675|ref|YP_008797729.1| - 5.5e-10 39.5 0.0 6.5e-10 39.3 0.0 1.1 1 0 0 1 1 1 1 ThiS family Urm1 PF09138.6 gi|557694675|ref|YP_008797729.1| - 2.7e-07 30.5 0.0 3.2e-07 30.3 0.0 1.2 1 0 0 1 1 1 1 Urm1 (Ubiquitin related modifier) Lambda_tail_I PF06805.7 gi|557694675|ref|YP_008797729.1| - 0.12 12.2 0.1 0.38 10.6 0.0 1.8 2 0 0 2 2 2 0 Bacteriophage lambda tail assembly protein I CGI-121 PF08617.5 gi|557694676|ref|YP_008797730.1| - 7.3e-14 51.7 0.0 9.1e-14 51.4 0.0 1.1 1 0 0 1 1 1 1 Kinase binding protein CGI-121 Sua5_yciO_yrdC PF01300.13 gi|557694677|ref|YP_008797731.1| - 3.1e-52 176.4 0.2 3.5e-52 176.2 0.1 1.0 1 0 0 1 1 1 1 Telomere recombination Zn_Tnp_IS1595 PF12760.2 gi|557694678|ref|YP_008797732.1| - 0.017 14.8 0.3 0.017 14.8 0.2 2.8 3 1 1 4 4 4 0 Transposase zinc-ribbon domain TerY-C PF15616.1 gi|557694678|ref|YP_008797732.1| - 0.093 12.6 0.7 0.093 12.6 0.5 2.2 1 1 1 2 2 2 0 TerY-C metal binding domain Cys_rich_CPXG PF14255.1 gi|557694678|ref|YP_008797732.1| - 0.11 12.2 0.5 1.6 8.6 0.1 2.5 2 0 0 2 2 2 0 Cysteine-rich CPXCG TF_Zn_Ribbon PF08271.7 gi|557694678|ref|YP_008797732.1| - 0.14 11.4 2.1 0.88 8.9 0.1 2.5 2 0 0 2 2 2 0 TFIIB zinc-binding DZR PF12773.2 gi|557694678|ref|YP_008797732.1| - 0.26 11.1 2.2 2.7 7.9 1.5 2.3 1 1 0 1 1 1 0 Double zinc ribbon Desulfoferrod_N PF06397.7 gi|557694678|ref|YP_008797732.1| - 0.29 10.5 2.9 5.2 6.5 0.1 3.1 3 0 0 3 3 3 0 Desulfoferrodoxin, N-terminal domain zf-C2H2 PF00096.21 gi|557694678|ref|YP_008797732.1| - 0.41 11.0 2.2 17 5.9 0.2 3.0 2 0 0 2 2 2 0 Zinc finger, C2H2 type zf-dskA_traR PF01258.12 gi|557694678|ref|YP_008797732.1| - 0.43 10.3 4.2 0.49 10.1 0.1 2.6 2 0 0 2 2 2 0 Prokaryotic dksA/traR C4-type zinc finger Zn-ribbon_8 PF09723.5 gi|557694678|ref|YP_008797732.1| - 8.1 6.4 8.9 3.3 7.7 0.3 3.2 2 2 1 3 3 3 0 Zinc ribbon domain Aminotran_4 PF01063.14 gi|557694679|ref|YP_008797733.1| - 4e-47 160.6 0.0 4.8e-47 160.3 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class IV Sialidase_penC PF12135.3 gi|557694679|ref|YP_008797733.1| - 0.93 9.1 3.8 6.1 6.5 0.7 2.7 3 0 0 3 3 3 0 Sialidase enzyme penultimate C terminal domain Thioredoxin_3 PF13192.1 gi|557694680|ref|YP_008797734.1| - 4.3e-28 96.9 0.0 4.1e-21 74.5 0.1 2.1 2 0 0 2 2 2 2 Thioredoxin domain Glutaredoxin PF00462.19 gi|557694680|ref|YP_008797734.1| - 4.2e-11 42.6 0.4 6.8e-09 35.5 0.2 2.8 3 0 0 3 3 3 1 Glutaredoxin Thioredoxin_4 PF13462.1 gi|557694680|ref|YP_008797734.1| - 4.9e-08 33.1 0.8 0.0068 16.4 0.0 3.1 2 1 1 3 3 3 3 Thioredoxin Thioredoxin PF00085.15 gi|557694680|ref|YP_008797734.1| - 2.8e-06 26.9 0.0 0.06 13.0 0.1 2.1 2 0 0 2 2 2 2 Thioredoxin Thioredoxin_9 PF14595.1 gi|557694680|ref|YP_008797734.1| - 1.5e-05 24.5 0.0 3.2e-05 23.5 0.0 1.4 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.1 gi|557694680|ref|YP_008797734.1| - 0.00014 21.9 2.2 0.74 10.0 0.2 3.7 2 2 1 3 3 3 1 Thioredoxin-like domain DUF836 PF05768.9 gi|557694680|ref|YP_008797734.1| - 0.00082 19.5 0.0 0.16 12.2 0.0 2.2 2 0 0 2 2 2 1 Glutaredoxin-like domain (DUF836) ABC_transp_aux PF09822.4 gi|557694680|ref|YP_008797734.1| - 0.011 15.2 0.0 3.9 6.8 0.0 2.2 2 1 0 2 2 2 0 ABC-type uncharacterized transport system DUF393 PF04134.7 gi|557694680|ref|YP_008797734.1| - 0.044 14.9 0.0 4.3 8.4 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function, DUF393 TraF PF13728.1 gi|557694680|ref|YP_008797734.1| - 0.083 12.3 0.0 8 5.8 0.0 2.4 2 1 0 2 2 2 0 F plasmid transfer operon protein zf-Di19 PF05605.7 gi|557694680|ref|YP_008797734.1| - 0.2 11.8 1.0 13 5.9 0.1 2.6 2 0 0 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding Aminotran_5 PF00266.14 gi|557694681|ref|YP_008797735.1| - 5.8e-23 81.2 0.0 8.6e-23 80.6 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V BON PF04972.12 gi|557694682|ref|YP_008797736.1| - 0.03 14.0 0.4 0.03 14.0 0.3 1.6 2 0 0 2 2 2 0 BON domain DUF1492 PF07374.6 gi|557694683|ref|YP_008797737.1| - 0.0086 16.1 1.0 0.02 15.0 0.3 1.9 1 1 1 2 2 2 1 Protein of unknown function (DUF1492) COG6 PF06419.6 gi|557694683|ref|YP_008797737.1| - 0.045 11.9 0.6 0.042 11.9 0.4 1.2 1 0 0 1 1 1 0 Conserved oligomeric complex COG6 DUF3496 PF12001.3 gi|557694683|ref|YP_008797737.1| - 0.054 13.7 2.0 0.066 13.4 1.4 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF3496) Methyltransf_24 PF13578.1 gi|557694683|ref|YP_008797737.1| - 0.073 13.9 0.2 0.28 12.0 0.0 1.8 1 1 1 2 2 2 0 Methyltransferase domain GHL13 PF14883.1 gi|557694683|ref|YP_008797737.1| - 0.081 12.0 0.5 0.12 11.5 0.3 1.3 1 0 0 1 1 1 0 Hypothetical glycosyl hydrolase family 13 Sec34 PF04136.10 gi|557694683|ref|YP_008797737.1| - 0.13 12.0 0.8 0.14 11.8 0.5 1.1 1 0 0 1 1 1 0 Sec34-like family DivIVA PF05103.8 gi|557694683|ref|YP_008797737.1| - 0.14 12.2 9.5 0.17 11.9 6.6 1.1 1 0 0 1 1 1 0 DivIVA protein DASH_Duo1 PF08651.5 gi|557694683|ref|YP_008797737.1| - 0.21 11.1 1.1 0.31 10.6 0.4 1.7 2 0 0 2 2 2 0 DASH complex subunit Duo1 ATP-synt_B PF00430.13 gi|557694683|ref|YP_008797737.1| - 0.24 11.2 10.1 0.34 10.7 7.0 1.2 1 0 0 1 1 1 0 ATP synthase B/B' CF(0) GvpL_GvpF PF06386.6 gi|557694683|ref|YP_008797737.1| - 0.3 10.6 7.0 0.35 10.4 4.8 1.0 1 0 0 1 1 1 0 Gas vesicle synthesis protein GvpL/GvpF Spectrin PF00435.16 gi|557694683|ref|YP_008797737.1| - 0.53 10.5 5.7 1.2 9.4 3.9 1.6 1 1 0 1 1 1 0 Spectrin repeat DUF883 PF05957.8 gi|557694683|ref|YP_008797737.1| - 1.1 9.7 10.1 2 8.8 1.1 2.2 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF883) FlgN PF05130.7 gi|557694683|ref|YP_008797737.1| - 1.1 9.4 5.5 1.5 9.0 3.8 1.4 1 1 0 1 1 1 0 FlgN protein HisKA_3 PF07730.8 gi|557694683|ref|YP_008797737.1| - 1.3 9.3 6.1 18 5.7 1.1 3.0 1 1 1 2 2 2 0 Histidine kinase VASP_tetra PF08776.6 gi|557694683|ref|YP_008797737.1| - 1.4 8.3 0.1 1.4 8.3 0.0 3.5 3 2 0 3 3 3 0 VASP tetramerisation domain DUF745 PF05335.8 gi|557694683|ref|YP_008797737.1| - 1.7 8.1 8.5 1.9 7.9 5.9 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF745) DUF2203 PF09969.4 gi|557694683|ref|YP_008797737.1| - 2.1 8.5 5.1 4.8 7.4 3.5 1.7 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2203) Bac_small_YrzI PF09501.5 gi|557694683|ref|YP_008797737.1| - 2.3 8.1 6.9 21 5.1 0.1 3.2 3 0 0 3 3 3 0 Probable sporulation protein (Bac_small_yrzI) V-SNARE PF05008.10 gi|557694683|ref|YP_008797737.1| - 2.4 8.3 7.6 1 9.5 1.9 2.2 1 1 1 2 2 2 0 Vesicle transport v-SNARE protein N-terminus vATP-synt_AC39 PF01992.11 gi|557694684|ref|YP_008797738.1| - 5.8e-39 134.1 3.3 7.1e-39 133.8 2.3 1.0 1 0 0 1 1 1 1 ATP synthase (C/AC39) subunit TusA PF01206.12 gi|557694685|ref|YP_008797739.1| - 5.8e-16 57.8 0.0 9.4e-16 57.1 0.0 1.4 1 0 0 1 1 1 1 Sulfurtransferase TusA DUF2249 PF10006.4 gi|557694685|ref|YP_008797739.1| - 0.011 15.2 0.0 0.028 13.9 0.0 1.6 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2249) IF-2 PF11987.3 gi|557694685|ref|YP_008797739.1| - 0.12 12.2 0.0 0.2 11.5 0.0 1.3 1 0 0 1 1 1 0 Translation-initiation factor 2 Sulf_transp PF04143.9 gi|557694686|ref|YP_008797740.1| - 1.5e-10 40.9 27.8 2.5e-06 27.3 3.9 4.1 4 0 0 4 4 4 2 Sulphur transport ApoL PF05461.6 gi|557694686|ref|YP_008797740.1| - 0.53 9.4 1.2 0.86 8.7 0.9 1.2 1 0 0 1 1 1 0 Apolipoprotein L DUF1464 PF07318.7 gi|557694687|ref|YP_008797741.1| - 1.8e-106 355.8 0.2 2e-106 355.6 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1464) FGGY_C PF02782.11 gi|557694687|ref|YP_008797741.1| - 0.0021 17.6 0.1 0.0032 17.1 0.1 1.2 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, C-terminal domain GHMP_kinases_C PF08544.8 gi|557694688|ref|YP_008797742.1| - 3.3e-06 27.2 0.1 9.4e-06 25.7 0.0 1.8 1 0 0 1 1 1 1 GHMP kinases C terminal GHMP_kinases_N PF00288.21 gi|557694688|ref|YP_008797742.1| - 0.026 14.5 0.0 0.06 13.4 0.0 1.6 1 0 0 1 1 1 0 GHMP kinases N terminal domain EGF_alliinase PF04863.8 gi|557694688|ref|YP_008797742.1| - 0.15 12.0 0.0 0.3 11.0 0.0 1.4 1 0 0 1 1 1 0 Alliinase EGF-like domain DUF447 PF04289.7 gi|557694689|ref|YP_008797743.1| - 4.7e-34 117.4 0.2 5.7e-34 117.1 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF447) HlyD_3 PF13437.1 gi|557694689|ref|YP_008797743.1| - 0.016 15.5 0.0 0.026 14.8 0.0 1.3 1 0 0 1 1 1 0 HlyD family secretion protein Pyridox_oxidase PF01243.15 gi|557694689|ref|YP_008797743.1| - 0.033 14.2 0.0 0.073 13.0 0.0 1.5 1 0 0 1 1 1 0 Pyridoxamine 5'-phosphate oxidase 2-oxoacid_dh PF00198.18 gi|557694690|ref|YP_008797744.1| - 6e-81 271.0 0.5 8.2e-81 270.6 0.3 1.1 1 0 0 1 1 1 1 2-oxoacid dehydrogenases acyltransferase (catalytic domain) Biotin_lipoyl PF00364.17 gi|557694690|ref|YP_008797744.1| - 3.4e-20 71.4 3.3 3.4e-20 71.4 2.3 2.2 2 0 0 2 2 2 1 Biotin-requiring enzyme E3_binding PF02817.12 gi|557694690|ref|YP_008797744.1| - 6.7e-18 64.0 0.9 6.7e-18 64.0 0.6 2.4 3 0 0 3 3 3 1 e3 binding domain Biotin_lipoyl_2 PF13533.1 gi|557694690|ref|YP_008797744.1| - 1.5e-11 43.7 9.3 7.4e-07 28.7 0.2 3.5 2 1 1 3 3 3 3 Biotin-lipoyl like HlyD PF00529.15 gi|557694690|ref|YP_008797744.1| - 0.00099 18.5 7.4 0.013 14.7 0.1 3.2 3 0 0 3 3 3 2 HlyD family secretion protein RnfC_N PF13375.1 gi|557694690|ref|YP_008797744.1| - 0.0016 18.1 1.5 0.01 15.5 0.0 2.5 2 0 0 2 2 2 1 RnfC Barrel sandwich hybrid domain HlyD_3 PF13437.1 gi|557694690|ref|YP_008797744.1| - 0.0022 18.3 0.4 0.086 13.1 0.0 2.7 1 1 1 2 2 2 1 HlyD family secretion protein GCV_H PF01597.14 gi|557694690|ref|YP_008797744.1| - 0.021 14.4 0.6 0.12 12.0 0.2 2.3 1 1 1 2 2 2 0 Glycine cleavage H-protein HlyD_2 PF12700.2 gi|557694690|ref|YP_008797744.1| - 0.065 12.3 0.6 8.9 5.3 0.0 2.7 1 1 2 3 3 3 0 HlyD family secretion protein MFS_1 PF07690.11 gi|557694691|ref|YP_008797745.1| - 1.9e-31 109.0 61.8 3.3e-21 75.3 25.0 2.3 1 1 1 2 2 2 2 Major Facilitator Superfamily LacY_symp PF01306.14 gi|557694691|ref|YP_008797745.1| - 0.003 16.1 3.5 0.003 16.1 2.5 2.2 1 1 0 2 2 2 1 LacY proton/sugar symporter Thioredox_DsbH PF03190.10 gi|557694692|ref|YP_008797746.1| - 9.3e-76 253.0 0.0 1.8e-75 252.1 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function, DUF255 Thioredoxin_7 PF13899.1 gi|557694692|ref|YP_008797746.1| - 2.4e-13 49.9 0.0 6.4e-13 48.5 0.0 1.8 1 0 0 1 1 1 1 Thioredoxin-like Glyco_hydro_76 PF03663.9 gi|557694692|ref|YP_008797746.1| - 2.9e-08 33.5 0.3 9.9e-07 28.4 0.2 2.6 2 1 0 2 2 2 1 Glycosyl hydrolase family 76 Glyco_hydro_88 PF07470.8 gi|557694692|ref|YP_008797746.1| - 1.7e-06 27.3 0.0 0.00082 18.5 0.0 2.4 2 0 0 2 2 2 2 Glycosyl Hydrolase Family 88 Glyco_hydro_47 PF01532.15 gi|557694692|ref|YP_008797746.1| - 4.1e-06 25.7 0.2 0.0013 17.4 0.0 3.0 2 1 1 3 3 3 1 Glycosyl hydrolase family 47 Thioredoxin_2 PF13098.1 gi|557694692|ref|YP_008797746.1| - 0.0003 20.9 0.0 0.0008 19.5 0.0 1.7 1 0 0 1 1 1 1 Thioredoxin-like domain HTH_10 PF04967.7 gi|557694692|ref|YP_008797746.1| - 0.00092 18.7 0.1 0.0021 17.6 0.0 1.6 1 0 0 1 1 1 1 HTH DNA binding domain GlcNAc_2-epim PF07221.6 gi|557694692|ref|YP_008797746.1| - 0.00093 18.2 0.0 0.1 11.5 0.0 3.0 3 0 0 3 3 3 1 N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase) C5-epim_C PF06662.8 gi|557694692|ref|YP_008797746.1| - 0.0085 15.4 0.6 0.19 10.9 0.0 3.0 3 1 1 4 4 4 1 D-glucuronyl C5-epimerase C-terminus DUF1680 PF07944.7 gi|557694692|ref|YP_008797746.1| - 0.02 13.1 0.9 0.34 9.1 0.0 2.3 2 1 0 3 3 3 0 Putative glycosyl hydrolase of unknown function (DUF1680) LANC_like PF05147.8 gi|557694692|ref|YP_008797746.1| - 0.044 12.3 0.0 3.2 6.2 0.0 2.4 2 0 0 2 2 2 0 Lanthionine synthetase C-like protein Pec_lyase PF09492.5 gi|557694692|ref|YP_008797746.1| - 0.11 11.6 0.0 0.32 10.1 0.0 1.7 2 0 0 2 2 2 0 Pectic acid lyase tRNA-synt_1b PF00579.20 gi|557694693|ref|YP_008797747.1| - 5.1e-45 153.8 0.0 9.8e-44 149.6 0.0 2.0 1 1 0 1 1 1 1 tRNA synthetases class I (W and Y) Ribonuc_red_lgC PF02867.10 gi|557694694|ref|YP_008797748.1| - 9.4e-131 436.9 0.0 4.9e-111 371.9 0.0 2.4 2 1 0 2 2 2 2 Ribonucleotide reductase, barrel domain Ribonuc_red_2_N PF08471.5 gi|557694694|ref|YP_008797748.1| - 2.1e-37 127.0 0.0 1.6e-36 124.2 0.0 2.3 2 0 0 2 2 2 1 Class II vitamin B12-dependent ribonucleotide reductase TSCPD PF12637.2 gi|557694694|ref|YP_008797748.1| - 2.5e-19 68.9 0.0 5.2e-19 67.9 0.0 1.6 1 0 0 1 1 1 1 TSCPD domain RuvA_C PF07499.8 gi|557694694|ref|YP_008797748.1| - 0.042 14.0 0.0 0.66 10.1 0.0 2.9 3 0 0 3 3 3 0 RuvA, C-terminal domain OrfB_Zn_ribbon PF07282.6 gi|557694694|ref|YP_008797748.1| - 0.069 12.8 1.4 0.23 11.1 1.0 1.9 1 0 0 1 1 1 0 Putative transposase DNA-binding domain Oxidored_q1 PF00361.15 gi|557694695|ref|YP_008797749.1| - 3.2e-67 226.6 18.6 3.2e-67 226.6 12.9 2.8 2 1 1 3 3 3 2 NADH-Ubiquinone/plastoquinone (complex I), various chains TP6A_N PF04406.9 gi|557694696|ref|YP_008797750.1| - 3.7e-15 55.3 0.1 7.7e-15 54.3 0.0 1.5 1 0 0 1 1 1 1 Type IIB DNA topoisomerase DUF2399 PF09664.5 gi|557694696|ref|YP_008797750.1| - 0.00017 21.4 0.0 0.00035 20.4 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function C-terminus (DUF2399) Metallophos_2 PF12850.2 gi|557694697|ref|YP_008797751.1| - 3.9e-06 26.7 0.0 6.1e-06 26.1 0.0 1.3 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|557694697|ref|YP_008797751.1| - 0.00014 21.3 0.2 0.0023 17.3 0.0 2.0 1 1 1 2 2 2 1 Calcineurin-like phosphoesterase SWIM PF04434.12 gi|557694698|ref|YP_008797752.1| - 8.7e-06 25.1 0.1 1.5e-05 24.3 0.1 1.3 1 0 0 1 1 1 1 SWIM zinc finger Cupin_2 PF07883.6 gi|557694699|ref|YP_008797753.1| - 1.5e-12 46.8 0.0 1.9e-12 46.4 0.0 1.2 1 0 0 1 1 1 1 Cupin domain Cupin_1 PF00190.17 gi|557694699|ref|YP_008797753.1| - 1.2e-06 28.0 0.0 1.4e-06 27.7 0.0 1.1 1 0 0 1 1 1 1 Cupin AraC_binding PF02311.14 gi|557694699|ref|YP_008797753.1| - 0.00018 21.2 0.0 0.00023 20.8 0.0 1.1 1 0 0 1 1 1 1 AraC-like ligand binding domain MannoseP_isomer PF01050.13 gi|557694699|ref|YP_008797753.1| - 0.0032 17.0 0.0 0.0038 16.8 0.0 1.1 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase Cupin_3 PF05899.7 gi|557694699|ref|YP_008797753.1| - 0.018 14.4 0.0 0.028 13.7 0.0 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF861) Cupin_6 PF12852.2 gi|557694699|ref|YP_008797753.1| - 0.019 14.5 0.0 0.022 14.3 0.0 1.1 1 0 0 1 1 1 0 Cupin EutQ PF06249.7 gi|557694699|ref|YP_008797753.1| - 0.036 13.6 0.0 0.056 12.9 0.0 1.4 1 1 0 1 1 1 0 Ethanolamine utilisation protein EutQ Pirin PF02678.11 gi|557694699|ref|YP_008797753.1| - 0.039 13.8 0.0 0.045 13.6 0.0 1.1 1 0 0 1 1 1 0 Pirin RNaseH_C PF09293.5 gi|557694699|ref|YP_008797753.1| - 0.043 13.7 0.0 0.058 13.2 0.0 1.2 1 0 0 1 1 1 0 T4 RNase H, C terminal ARD PF03079.9 gi|557694699|ref|YP_008797753.1| - 0.067 13.1 0.0 0.076 12.9 0.0 1.2 1 0 0 1 1 1 0 ARD/ARD' family Cupin_4 PF08007.7 gi|557694699|ref|YP_008797753.1| - 0.073 12.2 0.0 0.082 12.1 0.0 1.2 1 0 0 1 1 1 0 Cupin superfamily protein KduI PF04962.7 gi|557694699|ref|YP_008797753.1| - 0.092 11.7 0.0 0.11 11.5 0.0 1.1 1 0 0 1 1 1 0 KduI/IolB family 2OG-FeII_Oxy_5 PF13759.1 gi|557694699|ref|YP_008797753.1| - 0.094 13.0 0.0 5.5 7.3 0.0 2.1 1 1 0 2 2 2 0 Putative 2OG-Fe(II) oxygenase DUF1971 PF09313.6 gi|557694699|ref|YP_008797753.1| - 0.11 12.2 0.0 0.16 11.6 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1971) HAD_2 PF13419.1 gi|557694700|ref|YP_008797754.1| - 4.2e-05 23.8 0.0 0.082 13.1 0.0 2.9 2 1 0 2 2 2 2 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|557694700|ref|YP_008797754.1| - 0.0038 17.6 0.0 0.012 16.0 0.0 1.8 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.1 gi|557694700|ref|YP_008797754.1| - 0.041 13.7 0.0 0.18 11.6 0.0 2.1 2 0 0 2 2 2 0 Haloacid dehalogenase-like hydrolase GHMP_kinases_N PF00288.21 gi|557694701|ref|YP_008797755.1| - 2.4e-10 40.3 1.1 2.4e-10 40.3 0.8 2.0 2 0 0 2 2 2 1 GHMP kinases N terminal domain Iso_dh PF00180.15 gi|557694702|ref|YP_008797756.1| - 1.3e-87 293.9 0.0 1.5e-87 293.7 0.0 1.0 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase EIIA-man PF03610.11 gi|557694702|ref|YP_008797756.1| - 0.1 12.6 0.1 0.26 11.3 0.0 1.7 2 0 0 2 2 2 0 PTS system fructose IIA component Radical_SAM PF04055.16 gi|557694703|ref|YP_008797757.1| - 3.5e-09 37.0 0.1 5.5e-08 33.1 0.0 2.3 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|557694703|ref|YP_008797757.1| - 7.9e-08 32.5 0.0 1.8e-07 31.3 0.0 1.7 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|557694703|ref|YP_008797757.1| - 3e-07 30.4 1.7 3.2e-07 30.3 0.0 1.9 2 0 0 2 2 2 1 4Fe-4S single cluster domain Kazal_2 PF07648.10 gi|557694703|ref|YP_008797757.1| - 0.058 13.3 4.0 1.6 8.7 0.1 2.6 2 0 0 2 2 2 0 Kazal-type serine protease inhibitor domain Hemerythrin PF01814.18 gi|557694705|ref|YP_008797759.1| - 2e-18 66.7 0.1 2e-18 66.7 0.0 1.6 2 0 0 2 2 2 1 Hemerythrin HHE cation binding domain HemY_N PF07219.8 gi|557694705|ref|YP_008797759.1| - 0.14 11.6 0.4 0.27 10.7 0.3 1.3 1 0 0 1 1 1 0 HemY protein N-terminus Orai-1 PF07856.7 gi|557694706|ref|YP_008797760.1| - 5.2 6.5 7.6 15 5.1 5.2 1.8 1 1 0 1 1 1 0 Mediator of CRAC channel activity SBP_bac_5 PF00496.17 gi|557694707|ref|YP_008797761.1| - 2.7e-28 98.8 2.1 2.4e-23 82.6 0.0 2.6 2 0 0 2 2 2 2 Bacterial extracellular solute-binding proteins, family 5 Middle HsbA PF12296.3 gi|557694707|ref|YP_008797761.1| - 0.0097 15.7 1.5 0.018 14.8 1.0 1.6 1 1 0 1 1 1 1 Hydrophobic surface binding protein A SF-assemblin PF06705.6 gi|557694707|ref|YP_008797761.1| - 0.022 13.9 0.3 0.066 12.3 0.1 1.8 2 0 0 2 2 2 0 SF-assemblin/beta giardin Baculo_PEP_C PF04513.7 gi|557694707|ref|YP_008797761.1| - 0.061 13.1 2.9 0.11 12.2 2.0 1.3 1 0 0 1 1 1 0 Baculovirus polyhedron envelope protein, PEP, C terminus HR1 PF02185.11 gi|557694707|ref|YP_008797761.1| - 1.2 8.9 2.4 0.71 9.6 0.0 1.8 2 0 0 2 2 2 0 Hr1 repeat BPD_transp_1 PF00528.17 gi|557694708|ref|YP_008797762.1| - 2.8e-25 88.9 13.6 2.8e-25 88.9 9.4 2.2 2 1 1 3 3 3 2 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.17 gi|557694709|ref|YP_008797763.1| - 1.9e-18 66.6 12.3 1.9e-18 66.6 8.5 2.0 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.22 gi|557694710|ref|YP_008797764.1| - 2.9e-26 92.3 0.0 3.9e-26 91.9 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|557694710|ref|YP_008797764.1| - 4.4e-18 65.3 1.1 7.7e-18 64.6 0.7 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|557694710|ref|YP_008797764.1| - 1.5e-12 48.0 0.2 1.8e-09 38.0 0.0 2.1 1 1 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|557694710|ref|YP_008797764.1| - 8.8e-07 28.3 0.2 3.2e-06 26.5 0.1 1.7 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|557694710|ref|YP_008797764.1| - 0.00016 21.1 0.0 0.00031 20.2 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.1 gi|557694710|ref|YP_008797764.1| - 0.0014 18.7 0.0 0.12 12.4 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|557694710|ref|YP_008797764.1| - 0.0045 17.0 0.0 0.01 15.8 0.0 1.6 1 0 0 1 1 1 1 AAA ATPase domain IstB_IS21 PF01695.12 gi|557694710|ref|YP_008797764.1| - 0.0056 16.1 0.1 0.28 10.5 0.0 2.1 2 0 0 2 2 2 1 IstB-like ATP binding protein ABC_ATPase PF09818.4 gi|557694710|ref|YP_008797764.1| - 0.0092 14.6 0.0 0.017 13.7 0.0 1.4 1 0 0 1 1 1 1 Predicted ATPase of the ABC class SbcCD_C PF13558.1 gi|557694710|ref|YP_008797764.1| - 0.016 15.1 0.0 0.04 13.8 0.0 1.7 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_25 PF13481.1 gi|557694710|ref|YP_008797764.1| - 0.023 14.1 0.0 0.57 9.5 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_5 PF07728.9 gi|557694710|ref|YP_008797764.1| - 0.03 14.0 0.0 0.075 12.7 0.0 1.7 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) Hpr_kinase_C PF07475.7 gi|557694710|ref|YP_008797764.1| - 0.049 12.9 0.1 0.09 12.0 0.1 1.5 1 0 0 1 1 1 0 HPr Serine kinase C-terminal domain DUF258 PF03193.11 gi|557694710|ref|YP_008797764.1| - 0.068 12.3 0.0 0.12 11.5 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_15 PF13175.1 gi|557694710|ref|YP_008797764.1| - 0.069 12.1 0.1 0.57 9.1 0.0 1.9 2 0 0 2 2 2 0 AAA ATPase domain Runt PF00853.14 gi|557694710|ref|YP_008797764.1| - 0.085 12.3 0.0 0.28 10.6 0.0 1.7 1 1 1 2 2 2 0 Runt domain AAA_10 PF12846.2 gi|557694710|ref|YP_008797764.1| - 0.095 12.1 0.2 0.44 9.9 0.1 2.0 1 1 1 2 2 2 0 AAA-like domain Zeta_toxin PF06414.7 gi|557694710|ref|YP_008797764.1| - 0.14 11.2 0.0 0.32 10.0 0.0 1.5 1 1 0 1 1 1 0 Zeta toxin AIG1 PF04548.11 gi|557694710|ref|YP_008797764.1| - 0.16 11.0 0.0 0.25 10.4 0.0 1.2 1 0 0 1 1 1 0 AIG1 family ABC_tran PF00005.22 gi|557694711|ref|YP_008797765.1| - 1.3e-32 112.9 0.0 1.7e-32 112.6 0.0 1.1 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|557694711|ref|YP_008797765.1| - 1.3e-20 73.4 0.3 2.1e-20 72.8 0.2 1.3 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|557694711|ref|YP_008797765.1| - 1.7e-05 24.9 0.5 0.037 13.9 0.1 2.1 1 1 0 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|557694711|ref|YP_008797765.1| - 0.0014 18.6 0.2 0.0026 17.7 0.1 1.4 1 0 0 1 1 1 1 AAA ATPase domain SMC_N PF02463.14 gi|557694711|ref|YP_008797765.1| - 0.0037 16.5 0.0 0.017 14.3 0.0 1.8 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|557694711|ref|YP_008797765.1| - 0.0048 16.3 0.1 0.0089 15.5 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.1 gi|557694711|ref|YP_008797765.1| - 0.0054 16.8 0.6 0.033 14.3 0.4 2.0 1 1 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|557694711|ref|YP_008797765.1| - 0.0074 15.4 0.1 0.012 14.7 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_18 PF13238.1 gi|557694711|ref|YP_008797765.1| - 0.022 15.0 0.1 0.037 14.3 0.1 1.4 1 0 0 1 1 1 0 AAA domain AAA_13 PF13166.1 gi|557694711|ref|YP_008797765.1| - 0.031 12.7 0.2 0.38 9.1 0.0 2.0 2 0 0 2 2 2 0 AAA domain PduV-EutP PF10662.4 gi|557694711|ref|YP_008797765.1| - 0.039 13.4 0.1 0.081 12.4 0.1 1.5 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation NACHT PF05729.7 gi|557694711|ref|YP_008797765.1| - 0.049 13.2 1.2 0.075 12.6 0.3 1.7 1 1 1 2 2 2 0 NACHT domain AAA PF00004.24 gi|557694711|ref|YP_008797765.1| - 0.055 13.6 0.3 0.11 12.7 0.2 1.6 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Mg_chelatase PF01078.16 gi|557694711|ref|YP_008797765.1| - 0.063 12.4 0.0 0.1 11.7 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI T2SE PF00437.15 gi|557694711|ref|YP_008797765.1| - 0.086 11.7 0.0 0.15 10.9 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein MMR_HSR1 PF01926.18 gi|557694711|ref|YP_008797765.1| - 0.11 12.4 0.0 0.17 11.8 0.0 1.4 1 0 0 1 1 1 0 50S ribosome-binding GTPase AAA_5 PF07728.9 gi|557694711|ref|YP_008797765.1| - 0.11 12.1 0.3 0.25 11.0 0.2 1.6 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) IstB_IS21 PF01695.12 gi|557694711|ref|YP_008797765.1| - 0.14 11.5 0.1 0.26 10.6 0.1 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein MFS_1 PF07690.11 gi|557694712|ref|YP_008797766.1| - 0.00076 18.2 0.8 0.00095 17.9 0.6 1.1 1 0 0 1 1 1 1 Major Facilitator Superfamily DUF1469 PF07332.6 gi|557694712|ref|YP_008797766.1| - 0.099 12.3 1.0 0.17 11.6 0.7 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1469) RseC_MucC PF04246.7 gi|557694712|ref|YP_008797766.1| - 0.23 10.9 1.4 0.38 10.3 0.9 1.3 1 0 0 1 1 1 0 Positive regulator of sigma(E), RseC/MucC TnpW PF14202.1 gi|557694712|ref|YP_008797766.1| - 0.55 9.8 2.9 0.53 9.9 0.2 2.2 2 0 0 2 2 2 0 Transposon-encoded protein TnpW Oxidored_q1 PF00361.15 gi|557694713|ref|YP_008797767.1| - 5.9e-72 242.1 21.3 5.9e-72 242.1 14.7 2.5 2 1 0 2 2 2 1 NADH-Ubiquinone/plastoquinone (complex I), various chains Oxidored_q1_N PF00662.15 gi|557694713|ref|YP_008797767.1| - 2.2e-08 33.5 3.3 3.7e-08 32.7 0.2 2.7 2 0 0 2 2 2 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus V4R PF02830.13 gi|557694714|ref|YP_008797768.1| - 1e-07 31.6 2.5 1.5e-06 27.9 1.5 2.4 2 0 0 2 2 2 1 V4R domain Oxidored_q1 PF00361.15 gi|557694715|ref|YP_008797769.1| - 5.9e-82 274.9 15.1 5.9e-82 274.9 10.5 2.7 3 0 0 3 3 3 1 NADH-Ubiquinone/plastoquinone (complex I), various chains Oxidored_q1_N PF00662.15 gi|557694715|ref|YP_008797769.1| - 8.7e-13 47.6 0.1 3.3e-12 45.7 0.0 2.1 1 0 0 1 1 1 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Oxidored_q1_C PF01010.14 gi|557694715|ref|YP_008797769.1| - 4.9e-06 26.2 2.2 0.0096 15.4 0.0 2.5 2 0 0 2 2 2 2 NADH-Ubiquinone oxidoreductase (complex I) subunit C-terminus NADH5_C PF06455.6 gi|557694715|ref|YP_008797769.1| - 0.00049 19.5 4.2 0.0006 19.2 0.0 3.2 3 0 0 3 3 3 1 NADH dehydrogenase subunit 5 C-terminus CutA1 PF03091.10 gi|557694716|ref|YP_008797770.1| - 1.7e-22 79.0 0.0 1.8e-22 78.8 0.0 1.0 1 0 0 1 1 1 1 CutA1 divalent ion tolerance protein DUF309 PF03745.9 gi|557694717|ref|YP_008797771.1| - 6.2e-22 76.8 0.0 9.7e-22 76.1 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF309) Pneumo_ncap PF03246.8 gi|557694717|ref|YP_008797771.1| - 0.017 13.7 0.0 0.017 13.7 0.0 1.1 1 0 0 1 1 1 0 Pneumovirus nucleocapsid protein NTP_transferase PF00483.18 gi|557694717|ref|YP_008797771.1| - 0.042 13.1 0.0 0.052 12.8 0.0 1.2 1 0 0 1 1 1 0 Nucleotidyl transferase Rapamycin_bind PF08771.6 gi|557694717|ref|YP_008797771.1| - 0.065 13.3 0.0 0.23 11.5 0.0 1.9 1 1 1 2 2 2 0 Rapamycin binding domain RPA_C PF08784.6 gi|557694717|ref|YP_008797771.1| - 0.16 12.4 0.0 3.4 8.1 0.0 2.1 2 0 0 2 2 2 0 Replication protein A C terminal ECF-ribofla_trS PF07155.7 gi|557694718|ref|YP_008797772.1| - 1.6e-28 99.5 20.4 1.4e-20 73.6 10.6 2.0 1 1 1 2 2 2 2 ECF-type riboflavin transporter, S component 5TM-5TMR_LYT PF07694.7 gi|557694718|ref|YP_008797772.1| - 0.00026 20.3 24.5 0.00078 18.8 6.7 2.3 1 1 1 2 2 2 2 5TMR of 5TMR-LYT Caveolin PF01146.12 gi|557694718|ref|YP_008797772.1| - 0.19 11.2 1.9 0.15 11.6 0.2 1.6 2 0 0 2 2 2 0 Caveolin ABC_tran PF00005.22 gi|557694719|ref|YP_008797773.1| - 5.1e-21 75.4 0.0 6.4e-21 75.0 0.0 1.1 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.14 gi|557694719|ref|YP_008797773.1| - 1.2e-07 31.2 0.4 0.003 16.8 0.0 2.4 2 1 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|557694719|ref|YP_008797773.1| - 0.00028 20.3 0.1 0.00055 19.4 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_21 PF13304.1 gi|557694719|ref|YP_008797773.1| - 0.00036 20.5 0.3 0.0039 17.2 0.2 2.0 1 1 0 1 1 1 1 AAA domain AAA_25 PF13481.1 gi|557694719|ref|YP_008797773.1| - 0.0032 16.8 0.0 0.0059 16.0 0.0 1.6 2 0 0 2 2 2 1 AAA domain AAA_17 PF13207.1 gi|557694719|ref|YP_008797773.1| - 0.0045 17.7 0.1 0.015 16.0 0.1 2.1 1 1 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|557694719|ref|YP_008797773.1| - 0.0058 15.8 0.1 0.014 14.5 0.0 1.6 2 0 0 2 2 2 1 Protein of unknown function, DUF258 AAA_33 PF13671.1 gi|557694719|ref|YP_008797773.1| - 0.011 15.5 0.0 0.016 15.0 0.0 1.3 1 0 0 1 1 1 0 AAA domain MutS_V PF00488.16 gi|557694719|ref|YP_008797773.1| - 0.022 14.1 0.3 3.5 6.9 0.0 2.1 2 0 0 2 2 2 0 MutS domain V AAA_23 PF13476.1 gi|557694719|ref|YP_008797773.1| - 0.032 14.5 0.2 0.083 13.1 0.1 1.6 2 0 0 2 2 2 0 AAA domain AAA_PrkA PF08298.6 gi|557694719|ref|YP_008797773.1| - 0.055 12.1 0.0 0.089 11.4 0.0 1.3 1 0 0 1 1 1 0 PrkA AAA domain AAA_5 PF07728.9 gi|557694719|ref|YP_008797773.1| - 0.084 12.5 0.0 5.7 6.6 0.0 2.8 3 0 0 3 3 3 0 AAA domain (dynein-related subfamily) Glyco_trans_4_2 PF13477.1 gi|557694719|ref|YP_008797773.1| - 0.095 12.5 0.0 0.17 11.7 0.0 1.5 1 0 0 1 1 1 0 Glycosyl transferase 4-like AAA_13 PF13166.1 gi|557694719|ref|YP_008797773.1| - 0.16 10.3 0.0 0.22 9.9 0.0 1.1 1 0 0 1 1 1 0 AAA domain Lactamase_B_2 PF12706.2 gi|557694720|ref|YP_008797774.1| - 1.3e-14 54.1 0.5 5.2e-11 42.4 0.0 2.2 2 0 0 2 2 2 2 Beta-lactamase superfamily domain RMMBL PF07521.7 gi|557694720|ref|YP_008797774.1| - 5e-10 39.0 0.2 2.5e-09 36.8 0.1 2.2 1 0 0 1 1 1 1 RNA-metabolising metallo-beta-lactamase Lactamase_B PF00753.22 gi|557694720|ref|YP_008797774.1| - 4.1e-08 33.0 0.6 1.1e-07 31.7 0.4 1.7 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.1 gi|557694720|ref|YP_008797774.1| - 0.001 18.8 0.2 0.1 12.3 0.0 2.3 2 0 0 2 2 2 2 Beta-lactamase superfamily domain AIM24 PF01987.12 gi|557694721|ref|YP_008797775.1| - 4.6e-56 189.6 0.0 5.2e-56 189.4 0.0 1.0 1 0 0 1 1 1 1 Mitochondrial biogenesis AIM24 tRNA-synt_1d PF00750.14 gi|557694722|ref|YP_008797776.1| - 8.7e-38 130.0 0.0 8.6e-29 100.4 0.0 2.2 1 1 1 2 2 2 2 tRNA synthetases class I (R) DALR_1 PF05746.10 gi|557694722|ref|YP_008797776.1| - 7e-25 87.3 0.2 2.1e-24 85.7 0.0 2.0 2 0 0 2 2 2 1 DALR anticodon binding domain Arg_tRNA_synt_N PF03485.11 gi|557694722|ref|YP_008797776.1| - 4.6e-15 55.9 0.0 1.7e-14 54.1 0.0 2.0 1 0 0 1 1 1 1 Arginyl tRNA synthetase N terminal domain tRNA-synt_1e PF01406.14 gi|557694722|ref|YP_008797776.1| - 0.0027 16.8 0.0 0.0049 16.0 0.0 1.4 1 0 0 1 1 1 1 tRNA synthetases class I (C) catalytic domain tRNA-synt_1g PF09334.6 gi|557694722|ref|YP_008797776.1| - 0.015 13.9 0.2 0.058 12.0 0.0 2.0 2 0 0 2 2 2 0 tRNA synthetases class I (M) tRNA-synt_1 PF00133.17 gi|557694722|ref|YP_008797776.1| - 0.051 11.5 0.0 0.11 10.4 0.0 1.5 1 0 0 1 1 1 0 tRNA synthetases class I (I, L, M and V) DUF420 PF04238.7 gi|557694723|ref|YP_008797777.1| - 1.4e-34 118.9 4.4 1.4e-34 118.9 3.0 1.5 2 0 0 2 2 2 1 Protein of unknown function (DUF420) DUF2306 PF10067.4 gi|557694723|ref|YP_008797777.1| - 0.00031 20.8 0.9 0.00031 20.8 0.6 3.0 3 1 1 4 4 4 1 Predicted membrane protein (DUF2306) DUF1240 PF06836.7 gi|557694723|ref|YP_008797777.1| - 0.19 11.9 0.8 1.3 9.2 0.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1240) TGS PF02824.16 gi|557694724|ref|YP_008797778.1| - 1.9e-19 69.2 0.3 9.7e-19 66.9 0.3 2.0 2 0 0 2 2 2 1 TGS domain MMR_HSR1 PF01926.18 gi|557694724|ref|YP_008797778.1| - 1.8e-11 43.9 0.0 4.9e-11 42.5 0.0 1.7 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.13 gi|557694724|ref|YP_008797778.1| - 3.8e-06 26.2 0.0 3.6e-05 23.0 0.0 2.1 2 0 0 2 2 2 1 Ferrous iron transport protein B AAA_22 PF13401.1 gi|557694724|ref|YP_008797778.1| - 0.00033 20.8 0.4 0.053 13.6 0.0 3.1 2 1 3 5 5 5 1 AAA domain G-alpha PF00503.15 gi|557694724|ref|YP_008797778.1| - 0.0016 17.2 0.1 0.0016 17.2 0.0 1.1 1 0 0 1 1 1 1 G-protein alpha subunit Miro PF08477.8 gi|557694724|ref|YP_008797778.1| - 0.051 14.0 0.0 0.62 10.5 0.0 2.6 1 1 1 2 2 2 0 Miro-like protein ABC_tran PF00005.22 gi|557694724|ref|YP_008797778.1| - 0.053 13.8 1.6 1.1 9.4 0.1 2.5 1 1 1 2 2 2 0 ABC transporter Dynamin_N PF00350.18 gi|557694724|ref|YP_008797778.1| - 0.084 12.6 0.0 0.56 10.0 0.0 2.3 2 0 0 2 2 2 0 Dynamin family ATP-synt_F PF01990.12 gi|557694725|ref|YP_008797779.1| - 9.1e-15 54.8 0.0 9.4e-15 54.7 0.0 1.0 1 0 0 1 1 1 1 ATP synthase (F/14-kDa) subunit DUF162 PF02589.10 gi|557694725|ref|YP_008797779.1| - 0.036 13.5 0.0 0.036 13.5 0.0 1.1 1 0 0 1 1 1 0 Uncharacterised ACR, YkgG family COG1556 vATP-synt_E PF01991.13 gi|557694726|ref|YP_008797780.1| - 6e-15 55.0 11.1 7e-15 54.8 7.7 1.0 1 0 0 1 1 1 1 ATP synthase (E/31 kDa) subunit NUC173 PF08161.7 gi|557694726|ref|YP_008797780.1| - 0.0078 15.5 3.1 1.3 8.3 0.1 2.4 1 1 1 2 2 2 2 NUC173 domain mIF3 PF14877.1 gi|557694726|ref|YP_008797780.1| - 0.026 13.8 3.1 0.034 13.5 1.3 1.9 1 1 1 2 2 2 0 Mitochondrial translation initiation factor ZYG-11_interact PF05884.7 gi|557694726|ref|YP_008797780.1| - 0.12 11.4 0.7 0.16 11.0 0.5 1.1 1 0 0 1 1 1 0 Interactor of ZYG-11 DUF1890 PF09001.6 gi|557694726|ref|YP_008797780.1| - 0.17 11.8 1.9 0.97 9.4 0.0 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF1890) ClpB_D2-small PF10431.4 gi|557694726|ref|YP_008797780.1| - 0.21 11.5 2.8 7 6.6 0.1 3.5 2 2 1 3 3 3 0 C-terminal, D2-small domain, of ClpB protein Tht1 PF04163.7 gi|557694726|ref|YP_008797780.1| - 0.28 9.5 2.3 0.34 9.2 1.6 1.1 1 0 0 1 1 1 0 Tht1-like nuclear fusion protein PNPase PF03726.9 gi|557694726|ref|YP_008797780.1| - 8.8 6.6 11.5 62 3.9 5.9 2.7 2 1 0 2 2 2 0 Polyribonucleotide nucleotidyltransferase, RNA binding domain SurE PF01975.12 gi|557694727|ref|YP_008797781.1| - 6.2e-56 188.8 0.0 7.8e-56 188.5 0.0 1.1 1 0 0 1 1 1 1 Survival protein SurE HTH_AsnC-type PF13404.1 gi|557694729|ref|YP_008797783.1| - 1.4e-16 59.7 0.3 2.3e-16 59.0 0.2 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain AsnC_trans_reg PF01037.16 gi|557694729|ref|YP_008797783.1| - 1e-15 57.1 0.7 1.5e-15 56.6 0.1 1.6 2 0 0 2 2 2 1 AsnC family HTH_24 PF13412.1 gi|557694729|ref|YP_008797783.1| - 1.9e-15 55.9 0.2 3.5e-15 55.1 0.2 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Sigma70_r4 PF04545.11 gi|557694729|ref|YP_008797783.1| - 1.2e-06 27.7 0.1 2.2e-06 26.8 0.1 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_Tnp_ISL3 PF13542.1 gi|557694729|ref|YP_008797783.1| - 0.0003 19.8 0.0 0.00051 19.1 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 TrmB PF01978.14 gi|557694729|ref|YP_008797783.1| - 0.00079 19.0 2.0 0.011 15.3 0.1 2.7 2 1 1 3 3 3 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.15 gi|557694729|ref|YP_008797783.1| - 0.0024 17.4 0.0 0.0046 16.6 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_11 PF08279.7 gi|557694729|ref|YP_008797783.1| - 0.0045 16.6 0.0 0.0097 15.5 0.0 1.6 1 0 0 1 1 1 1 HTH domain HTH_IclR PF09339.5 gi|557694729|ref|YP_008797783.1| - 0.0063 16.0 0.0 0.011 15.3 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_20 PF12840.2 gi|557694729|ref|YP_008797783.1| - 0.0074 16.0 0.0 0.015 15.1 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|557694729|ref|YP_008797783.1| - 0.0076 15.8 0.0 0.014 15.0 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_23 PF13384.1 gi|557694729|ref|YP_008797783.1| - 0.016 14.8 0.0 0.031 13.9 0.0 1.4 1 0 0 1 1 1 0 Homeodomain-like domain ACT_4 PF13291.1 gi|557694729|ref|YP_008797783.1| - 0.019 15.2 0.2 0.088 13.1 0.1 2.1 1 1 0 1 1 1 0 ACT domain HTH_Mga PF08280.6 gi|557694729|ref|YP_008797783.1| - 0.021 14.5 0.0 0.064 13.0 0.0 1.8 2 0 0 2 2 2 0 M protein trans-acting positive regulator (MGA) HTH domain Sigma70_r4_2 PF08281.7 gi|557694729|ref|YP_008797783.1| - 0.032 13.7 0.1 0.1 12.0 0.1 1.9 1 1 0 1 1 1 0 Sigma-70, region 4 HTH_DeoR PF08220.7 gi|557694729|ref|YP_008797783.1| - 0.043 13.3 0.0 0.085 12.4 0.0 1.4 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain HTH_1 PF00126.22 gi|557694729|ref|YP_008797783.1| - 0.043 13.5 0.0 0.099 12.3 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family DDRGK PF09756.4 gi|557694729|ref|YP_008797783.1| - 0.045 13.1 0.2 0.095 12.1 0.1 1.6 2 0 0 2 2 2 0 DDRGK domain DUF4582 PF15189.1 gi|557694729|ref|YP_008797783.1| - 0.046 12.9 0.1 0.12 11.5 0.0 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4582) DUF977 PF06163.6 gi|557694729|ref|YP_008797783.1| - 0.054 13.2 0.6 0.14 11.9 0.1 1.8 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF977) FaeA PF04703.7 gi|557694729|ref|YP_008797783.1| - 0.084 13.0 0.0 2.5 8.3 0.0 2.3 2 0 0 2 2 2 0 FaeA-like protein MarR PF01047.17 gi|557694729|ref|YP_008797783.1| - 0.1 12.2 0.1 0.4 10.4 0.0 1.9 2 0 0 2 2 2 0 MarR family GYD PF08734.6 gi|557694729|ref|YP_008797783.1| - 0.11 12.2 0.0 0.42 10.3 0.0 1.9 2 0 0 2 2 2 0 GYD domain Phage_NinH PF06322.6 gi|557694729|ref|YP_008797783.1| - 0.12 12.0 0.0 0.23 11.0 0.0 1.5 1 0 0 1 1 1 0 Phage NinH protein DUF2805 PF10985.3 gi|557694729|ref|YP_008797783.1| - 0.12 12.3 0.3 0.39 10.6 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF2805) CoA_binding PF02629.14 gi|557694729|ref|YP_008797783.1| - 0.2 12.1 1.2 1.1 9.8 0.7 2.1 1 1 1 2 2 2 0 CoA binding domain Semialdhyde_dh PF01118.19 gi|557694730|ref|YP_008797784.1| - 8.2e-34 116.5 0.0 1.3e-33 115.8 0.0 1.3 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain Semialdhyde_dhC PF02774.13 gi|557694730|ref|YP_008797784.1| - 2.8e-12 46.8 0.0 5e-12 46.0 0.0 1.4 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, dimerisation domain GFO_IDH_MocA PF01408.17 gi|557694730|ref|YP_008797784.1| - 0.0016 18.9 0.0 0.0034 17.8 0.0 1.5 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold AA_kinase PF00696.23 gi|557694731|ref|YP_008797785.1| - 2e-32 112.6 6.3 2.3e-32 112.4 4.3 1.0 1 0 0 1 1 1 1 Amino acid kinase family GerE PF00196.14 gi|557694731|ref|YP_008797785.1| - 0.083 12.2 0.0 0.17 11.2 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family RNA_pol_Rpb2_6 PF00562.23 gi|557694731|ref|YP_008797785.1| - 0.11 11.2 0.0 0.15 10.7 0.0 1.1 1 0 0 1 1 1 0 RNA polymerase Rpb2, domain 6 Lar_restr_allev PF14354.1 gi|557694732|ref|YP_008797786.1| - 0.0023 18.1 1.8 0.0041 17.4 1.2 1.4 1 1 0 1 1 1 1 Restriction alleviation protein Lar TF_Zn_Ribbon PF08271.7 gi|557694732|ref|YP_008797786.1| - 0.0024 17.1 2.9 0.0046 16.2 2.0 1.5 1 1 0 1 1 1 1 TFIIB zinc-binding OrfB_Zn_ribbon PF07282.6 gi|557694732|ref|YP_008797786.1| - 0.003 17.1 0.2 0.0054 16.3 0.1 1.4 1 1 0 1 1 1 1 Putative transposase DNA-binding domain Nudix_N_2 PF14803.1 gi|557694732|ref|YP_008797786.1| - 0.0097 15.5 1.1 3 7.5 0.2 2.2 2 0 0 2 2 2 2 Nudix N-terminal DNA_ligase_ZBD PF03119.11 gi|557694732|ref|YP_008797786.1| - 0.011 15.4 3.1 0.11 12.1 0.6 2.4 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain zf-IS66 PF13005.2 gi|557694732|ref|YP_008797786.1| - 0.014 15.3 2.5 1.8 8.6 0.1 2.3 2 1 0 2 2 2 0 zinc-finger binding domain of transposase IS66 Zn-ribbon_8 PF09723.5 gi|557694732|ref|YP_008797786.1| - 0.015 15.2 1.5 2.8 7.9 0.1 2.2 2 0 0 2 2 2 0 Zinc ribbon domain Cys_rich_CPXG PF14255.1 gi|557694732|ref|YP_008797786.1| - 0.018 14.8 0.3 5.1 7.0 0.0 2.1 2 0 0 2 2 2 0 Cysteine-rich CPXCG DUF3133 PF11331.3 gi|557694732|ref|YP_008797786.1| - 0.025 14.1 0.2 0.034 13.7 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3133) Zn_Tnp_IS1595 PF12760.2 gi|557694732|ref|YP_008797786.1| - 0.031 14.0 0.2 0.068 12.9 0.1 1.6 1 1 0 1 1 1 0 Transposase zinc-ribbon domain DZR PF12773.2 gi|557694732|ref|YP_008797786.1| - 0.066 13.0 0.8 0.26 11.1 0.5 1.9 1 1 0 1 1 1 0 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|557694732|ref|YP_008797786.1| - 0.081 12.1 2.1 2.7 7.3 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain A2L_zn_ribbon PF08792.5 gi|557694732|ref|YP_008797786.1| - 0.085 12.3 0.5 6.3 6.3 0.1 2.1 2 0 0 2 2 2 0 A2L zinc ribbon domain Elf1 PF05129.8 gi|557694732|ref|YP_008797786.1| - 0.092 12.4 0.1 0.21 11.2 0.1 1.5 1 1 0 1 1 1 0 Transcription elongation factor Elf1 like zinc_ribbon_5 PF13719.1 gi|557694732|ref|YP_008797786.1| - 0.1 12.1 0.2 0.44 10.1 0.1 1.9 1 1 0 1 1 1 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|557694732|ref|YP_008797786.1| - 0.11 12.2 0.1 0.28 10.9 0.1 1.7 1 1 0 1 1 1 0 zinc-ribbon domain RRN7 PF11781.3 gi|557694732|ref|YP_008797786.1| - 0.15 11.5 1.6 5.2 6.6 0.1 2.2 2 0 0 2 2 2 0 RNA polymerase I-specific transcription initiation factor Rrn7 Prim_Zn_Ribbon PF08273.7 gi|557694732|ref|YP_008797786.1| - 0.16 12.0 2.0 0.63 10.1 0.5 2.0 2 0 0 2 2 2 0 Zinc-binding domain of primase-helicase zf-HYPF PF07503.7 gi|557694732|ref|YP_008797786.1| - 0.17 11.3 0.7 4.9 6.6 0.1 2.1 2 0 0 2 2 2 0 HypF finger zf-C2H2_6 PF13912.1 gi|557694732|ref|YP_008797786.1| - 0.18 11.7 1.2 1.5 8.8 0.1 2.1 2 0 0 2 2 2 0 C2H2-type zinc finger zf-TFIIB PF13453.1 gi|557694732|ref|YP_008797786.1| - 0.19 10.9 1.3 0.35 10.1 0.9 1.4 1 1 0 1 1 1 0 Transcription factor zinc-finger zinc_ribbon_2 PF13240.1 gi|557694732|ref|YP_008797786.1| - 0.27 10.7 2.8 4 7.0 1.9 2.2 1 1 0 1 1 1 0 zinc-ribbon domain Rubredoxin PF00301.15 gi|557694732|ref|YP_008797786.1| - 1.1 9.2 5.9 3.4 7.6 0.1 2.5 2 1 1 3 3 3 0 Rubredoxin Desulfoferrod_N PF06397.7 gi|557694732|ref|YP_008797786.1| - 1.1 8.7 3.6 1.5 8.2 0.8 2.0 1 1 1 2 2 2 0 Desulfoferrodoxin, N-terminal domain FeS PF04060.8 gi|557694732|ref|YP_008797786.1| - 1.4 8.5 4.3 9.1 5.9 0.2 2.2 2 0 0 2 2 2 0 Putative Fe-S cluster RimK PF08443.6 gi|557694733|ref|YP_008797787.1| - 3.3e-42 144.1 0.0 4.6e-42 143.6 0.0 1.2 1 0 0 1 1 1 1 RimK-like ATP-grasp domain ATP-grasp_4 PF13535.1 gi|557694733|ref|YP_008797787.1| - 2e-13 50.5 0.0 3.3e-13 49.7 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain GSH-S_ATP PF02955.11 gi|557694733|ref|YP_008797787.1| - 1.9e-07 30.3 0.0 2.8e-07 29.8 0.0 1.2 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|557694733|ref|YP_008797787.1| - 5.3e-06 25.3 0.0 7.8e-06 24.8 0.0 1.4 1 1 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon CPSase_L_D2 PF02786.12 gi|557694733|ref|YP_008797787.1| - 5.1e-05 22.6 0.0 0.00023 20.4 0.0 1.9 2 0 0 2 2 2 1 Carbamoyl-phosphate synthase L chain, ATP binding domain ATP-grasp_5 PF13549.1 gi|557694733|ref|YP_008797787.1| - 0.00037 19.7 0.0 0.00067 18.9 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_3 PF02655.9 gi|557694733|ref|YP_008797787.1| - 0.00041 20.2 0.1 0.0032 17.3 0.1 2.3 1 1 0 1 1 1 1 ATP-grasp domain ATP-grasp PF02222.17 gi|557694733|ref|YP_008797787.1| - 0.00055 19.3 0.0 0.0012 18.2 0.0 1.5 1 0 0 1 1 1 1 ATP-grasp domain Aminotran_3 PF00202.16 gi|557694734|ref|YP_008797788.1| - 1.5e-98 329.7 0.0 1.8e-98 329.5 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-III Aminotran_1_2 PF00155.16 gi|557694734|ref|YP_008797788.1| - 0.0004 19.4 0.0 0.0005 19.1 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.14 gi|557694734|ref|YP_008797788.1| - 0.004 15.9 0.0 0.0067 15.2 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class-V cobW PF02492.14 gi|557694735|ref|YP_008797789.1| - 7.4e-08 32.0 0.2 3.7e-07 29.7 0.1 2.0 1 1 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain MobB PF03205.9 gi|557694735|ref|YP_008797789.1| - 0.00055 19.6 0.2 0.0017 18.0 0.1 1.9 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B CbiA PF01656.18 gi|557694735|ref|YP_008797789.1| - 0.00066 19.1 0.2 0.0019 17.6 0.1 1.8 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain Thymidylate_kin PF02223.12 gi|557694735|ref|YP_008797789.1| - 0.0052 16.1 0.0 0.01 15.1 0.0 1.5 1 0 0 1 1 1 1 Thymidylate kinase AAA_26 PF13500.1 gi|557694735|ref|YP_008797789.1| - 0.0053 16.3 0.0 0.011 15.3 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|557694735|ref|YP_008797789.1| - 0.02 15.2 0.0 0.039 14.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_17 PF13207.1 gi|557694735|ref|YP_008797789.1| - 0.038 14.8 0.0 0.069 13.9 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.1 gi|557694735|ref|YP_008797789.1| - 0.048 13.2 1.5 0.2 11.2 0.1 2.3 2 0 0 2 2 2 0 AAA domain PRK PF00485.13 gi|557694735|ref|YP_008797789.1| - 0.056 12.9 0.0 0.16 11.5 0.0 1.7 2 0 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family LpxK PF02606.9 gi|557694735|ref|YP_008797789.1| - 0.087 11.7 1.3 0.3 9.9 0.9 2.0 1 1 0 1 1 1 0 Tetraacyldisaccharide-1-P 4'-kinase ArgK PF03308.11 gi|557694735|ref|YP_008797789.1| - 0.2 10.3 4.6 0.16 10.7 0.2 2.2 2 1 0 2 2 2 0 ArgK protein Peptidase_M20 PF01546.23 gi|557694736|ref|YP_008797790.1| - 1.7e-25 89.6 0.1 2e-25 89.3 0.1 1.1 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.9 gi|557694736|ref|YP_008797790.1| - 2.4e-12 46.6 0.0 4.3e-12 45.7 0.0 1.4 1 0 0 1 1 1 1 Peptidase dimerisation domain Peptidase_M28 PF04389.12 gi|557694736|ref|YP_008797790.1| - 0.0028 17.4 0.1 0.004 16.9 0.1 1.3 1 0 0 1 1 1 1 Peptidase family M28 Lyase_1 PF00206.15 gi|557694737|ref|YP_008797791.1| - 1.1e-43 149.6 1.4 2.8e-43 148.2 0.3 2.0 2 0 0 2 2 2 1 Lyase ASL_C2 PF14698.1 gi|557694737|ref|YP_008797791.1| - 0.0015 18.5 0.1 0.0045 17.0 0.0 1.9 1 0 0 1 1 1 1 Argininosuccinate lyase C-terminal Arginosuc_synth PF00764.14 gi|557694738|ref|YP_008797792.1| - 4.9e-155 516.3 0.0 5.7e-155 516.1 0.0 1.0 1 0 0 1 1 1 1 Arginosuccinate synthase QueC PF06508.8 gi|557694738|ref|YP_008797792.1| - 0.00079 18.7 0.1 0.0013 18.0 0.0 1.4 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC Asn_synthase PF00733.16 gi|557694738|ref|YP_008797792.1| - 0.0012 18.4 0.1 0.0016 17.9 0.0 1.2 1 0 0 1 1 1 1 Asparagine synthase PAPS_reduct PF01507.14 gi|557694738|ref|YP_008797792.1| - 0.039 13.7 0.0 0.1 12.4 0.0 1.7 1 1 0 1 1 1 0 Phosphoadenosine phosphosulfate reductase family Phage_BR0599 PF09356.5 gi|557694738|ref|YP_008797792.1| - 0.11 12.6 0.0 0.29 11.3 0.0 1.7 1 0 0 1 1 1 0 Phage conserved hypothetical protein BR0599 ATP_bind_3 PF01171.15 gi|557694738|ref|YP_008797792.1| - 0.13 11.7 0.0 0.2 11.1 0.0 1.4 1 0 0 1 1 1 0 PP-loop family dsDNA_bind PF01984.15 gi|557694740|ref|YP_008797794.1| - 4.5e-26 90.9 11.4 5.8e-26 90.5 7.9 1.1 1 0 0 1 1 1 1 Double-stranded DNA-binding domain Ebp2 PF05890.7 gi|557694740|ref|YP_008797794.1| - 0.0069 15.7 2.9 0.0069 15.7 2.0 1.2 1 0 0 1 1 1 1 Eukaryotic rRNA processing protein EBP2 SASP PF00269.15 gi|557694740|ref|YP_008797794.1| - 0.034 14.0 0.0 0.069 13.0 0.0 1.5 1 0 0 1 1 1 0 Small, acid-soluble spore proteins, alpha/beta type EF-1_beta_acid PF10587.4 gi|557694740|ref|YP_008797794.1| - 0.038 14.1 2.8 0.038 14.1 1.9 2.6 2 0 0 2 2 2 0 Eukaryotic elongation factor 1 beta central acidic region PELOTA_1 PF15608.1 gi|557694740|ref|YP_008797794.1| - 0.047 13.4 0.2 0.052 13.3 0.2 1.3 1 0 0 1 1 1 0 PELOTA RNA binding domain DUF1454 PF07305.7 gi|557694740|ref|YP_008797794.1| - 0.089 11.8 0.6 0.11 11.6 0.4 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1454) DUF2126 PF09899.4 gi|557694740|ref|YP_008797794.1| - 0.11 10.5 1.1 0.11 10.5 0.8 1.0 1 0 0 1 1 1 0 Putative amidoligase enzyme (DUF2126) SDA1 PF05285.7 gi|557694740|ref|YP_008797794.1| - 0.65 9.2 5.9 0.73 9.0 4.1 1.0 1 0 0 1 1 1 0 SDA1 PAC2 PF09754.4 gi|557694741|ref|YP_008797795.1| - 9.1e-32 110.6 0.0 1.1e-31 110.3 0.0 1.0 1 0 0 1 1 1 1 PAC2 family TGT PF01702.13 gi|557694742|ref|YP_008797796.1| - 2.8e-46 157.7 0.0 4.3e-46 157.1 0.0 1.3 1 0 0 1 1 1 1 Queuine tRNA-ribosyltransferase Acylphosphatase PF00708.13 gi|557694743|ref|YP_008797797.1| - 5e-27 93.8 0.2 1.2e-26 92.5 0.2 1.7 1 0 0 1 1 1 1 Acylphosphatase PMC2NT PF08066.7 gi|557694743|ref|YP_008797797.1| - 0.17 12.2 16.8 0.41 10.9 2.7 4.4 1 1 3 4 4 4 0 PMC2NT (NUC016) domain Hint_2 PF13403.1 gi|557694743|ref|YP_008797797.1| - 2.2 8.1 5.9 15 5.4 2.1 2.8 1 1 1 2 2 2 0 Hint domain DUF1628 PF07790.6 gi|557694745|ref|YP_008797799.1| - 1e-05 26.1 4.4 2.5e-05 24.9 2.4 1.9 2 0 0 2 2 2 1 Protein of unknown function (DUF1628) ACP_syn_III PF08545.5 gi|557694745|ref|YP_008797799.1| - 0.67 9.6 2.9 0.55 9.9 0.9 1.6 2 0 0 2 2 2 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III RskA PF10099.4 gi|557694745|ref|YP_008797799.1| - 2.1 8.0 7.0 0.34 10.6 2.3 1.6 2 0 0 2 2 2 0 Anti-sigma-K factor rskA T2SF PF00482.18 gi|557694746|ref|YP_008797800.1| - 0.082 12.8 0.1 0.082 12.8 0.0 3.3 3 1 0 3 3 3 0 Type II secretion system (T2SS), protein F DZR PF12773.2 gi|557694747|ref|YP_008797801.1| - 1.6e-06 27.7 13.3 0.0013 18.4 3.9 2.8 1 1 1 2 2 2 2 Double zinc ribbon TF_Zn_Ribbon PF08271.7 gi|557694747|ref|YP_008797801.1| - 0.0012 18.1 2.5 0.0012 18.1 1.7 3.7 3 1 0 3 3 3 1 TFIIB zinc-binding HypA PF01155.14 gi|557694747|ref|YP_008797801.1| - 0.0016 18.0 10.7 0.031 13.9 0.6 3.2 1 1 1 2 2 2 1 Hydrogenase expression/synthesis hypA family OrfB_Zn_ribbon PF07282.6 gi|557694747|ref|YP_008797801.1| - 0.0017 17.9 0.9 0.0017 17.9 0.6 3.9 3 2 2 5 5 5 1 Putative transposase DNA-binding domain zf-ribbon_3 PF13248.1 gi|557694747|ref|YP_008797801.1| - 0.0029 16.7 21.3 0.074 12.2 0.3 3.8 3 2 0 3 3 3 2 zinc-ribbon domain Nudix_N_2 PF14803.1 gi|557694747|ref|YP_008797801.1| - 0.0044 16.6 0.5 0.0044 16.6 0.4 4.1 4 1 0 4 4 4 1 Nudix N-terminal Y1_Tnp PF01797.11 gi|557694747|ref|YP_008797801.1| - 0.0063 16.3 0.0 0.011 15.6 0.0 1.4 1 0 0 1 1 1 1 Transposase IS200 like zf-TFIIB PF13453.1 gi|557694747|ref|YP_008797801.1| - 0.012 14.8 0.4 0.012 14.8 0.3 2.7 3 0 0 3 3 2 0 Transcription factor zinc-finger DUF1451 PF07295.6 gi|557694747|ref|YP_008797801.1| - 0.012 15.3 0.8 0.012 15.3 0.5 3.3 1 1 1 2 2 2 0 Protein of unknown function (DUF1451) Zn-ribbon_8 PF09723.5 gi|557694747|ref|YP_008797801.1| - 0.029 14.3 15.2 3.4 7.6 0.1 4.5 3 2 1 4 4 4 0 Zinc ribbon domain zinc-ribbons_6 PF07191.7 gi|557694747|ref|YP_008797801.1| - 0.035 13.8 9.6 0.1 12.3 1.5 2.3 2 0 0 2 2 2 0 zinc-ribbons Zn_Tnp_IS1595 PF12760.2 gi|557694747|ref|YP_008797801.1| - 0.044 13.6 0.9 0.044 13.6 0.6 3.8 2 2 1 4 4 4 0 Transposase zinc-ribbon domain Ribosomal_L37e PF01907.14 gi|557694747|ref|YP_008797801.1| - 0.077 12.7 11.1 0.35 10.7 0.9 2.9 3 0 0 3 3 3 0 Ribosomal protein L37e DUF35_N PF12172.3 gi|557694747|ref|YP_008797801.1| - 0.077 12.9 6.9 1.2 9.1 0.4 3.4 3 0 0 3 3 3 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Rtf2 PF04641.7 gi|557694747|ref|YP_008797801.1| - 0.15 11.1 3.1 0.28 10.3 1.7 1.7 1 1 0 1 1 1 0 Rtf2 RING-finger RNA_POL_M_15KD PF02150.11 gi|557694747|ref|YP_008797801.1| - 0.2 11.3 0.2 0.2 11.3 0.2 3.7 3 1 1 4 4 4 0 RNA polymerases M/15 Kd subunit zinc_ribbon_2 PF13240.1 gi|557694747|ref|YP_008797801.1| - 0.39 10.2 22.9 0.74 9.3 0.8 5.8 4 2 3 7 7 7 0 zinc-ribbon domain zf-CCHC_5 PF14787.1 gi|557694747|ref|YP_008797801.1| - 0.65 9.5 4.8 1 8.9 0.1 2.4 2 0 0 2 2 2 0 GAG-polyprotein viral zinc-finger DUF2318 PF10080.4 gi|557694747|ref|YP_008797801.1| - 0.88 9.3 10.8 0.089 12.5 1.8 2.4 1 1 1 2 2 2 0 Predicted membrane protein (DUF2318) LIM PF00412.17 gi|557694747|ref|YP_008797801.1| - 0.96 9.5 10.1 0.29 11.2 0.6 3.3 3 1 0 3 3 3 0 LIM domain zf-C2H2 PF00096.21 gi|557694747|ref|YP_008797801.1| - 1 9.8 0.1 1 9.8 0.0 4.2 4 1 0 4 4 4 0 Zinc finger, C2H2 type NRDD PF13597.1 gi|557694747|ref|YP_008797801.1| - 1.6 6.7 4.8 0.36 8.8 0.0 2.2 3 0 0 3 3 3 0 Anaerobic ribonucleoside-triphosphate reductase PHF5 PF03660.9 gi|557694747|ref|YP_008797801.1| - 1.9 8.6 11.8 0.73 9.9 1.6 2.2 1 1 0 2 2 2 0 PHF5-like protein zf-C3HC4_3 PF13920.1 gi|557694747|ref|YP_008797801.1| - 4.8 6.9 14.1 4.8 6.9 0.8 2.8 1 1 2 3 3 3 0 Zinc finger, C3HC4 type (RING finger) C1_1 PF00130.17 gi|557694747|ref|YP_008797801.1| - 5.1 6.9 12.8 3.4 7.4 1.0 2.8 2 1 1 3 3 3 0 Phorbol esters/diacylglycerol binding domain (C1 domain) DUF2387 PF09526.5 gi|557694747|ref|YP_008797801.1| - 6.4 6.7 13.4 33 4.5 4.8 3.4 2 1 0 2 2 2 0 Probable metal-binding protein (DUF2387) Ribosomal_S27 PF01599.14 gi|557694747|ref|YP_008797801.1| - 7 6.5 13.8 2.4 8.0 0.8 3.0 3 0 0 3 3 2 0 Ribosomal protein S27a Prok-RING_1 PF14446.1 gi|557694747|ref|YP_008797801.1| - 8 6.2 17.4 11 5.8 4.7 3.4 2 2 1 3 3 3 0 Prokaryotic RING finger family 1 T2SE PF00437.15 gi|557694748|ref|YP_008797802.1| - 9.5e-38 129.6 0.0 1.8e-37 128.7 0.0 1.4 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_18 PF13238.1 gi|557694748|ref|YP_008797802.1| - 1.2e-05 25.5 0.1 8e-05 22.9 0.0 2.4 2 1 0 2 2 2 1 AAA domain AAA_29 PF13555.1 gi|557694748|ref|YP_008797802.1| - 8.3e-05 22.0 0.6 0.00018 20.9 0.1 1.8 2 0 0 2 2 1 1 P-loop containing region of AAA domain AAA_33 PF13671.1 gi|557694748|ref|YP_008797802.1| - 0.0001 22.2 0.0 0.00021 21.1 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_23 PF13476.1 gi|557694748|ref|YP_008797802.1| - 0.00012 22.5 0.5 0.0014 18.9 0.0 2.5 3 0 0 3 3 3 1 AAA domain ABC_tran PF00005.22 gi|557694748|ref|YP_008797802.1| - 0.00033 20.9 0.0 0.0015 18.8 0.0 2.0 2 0 0 2 2 1 1 ABC transporter Zeta_toxin PF06414.7 gi|557694748|ref|YP_008797802.1| - 0.00039 19.5 0.0 0.00076 18.6 0.0 1.4 1 0 0 1 1 1 1 Zeta toxin AAA_17 PF13207.1 gi|557694748|ref|YP_008797802.1| - 0.00056 20.7 0.1 0.0044 17.8 0.0 2.4 2 1 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|557694748|ref|YP_008797802.1| - 0.00066 19.7 0.0 0.0014 18.6 0.0 1.6 1 0 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|557694748|ref|YP_008797802.1| - 0.00095 19.3 0.0 0.0024 18.0 0.0 1.7 1 0 0 1 1 1 1 AAA domain MobB PF03205.9 gi|557694748|ref|YP_008797802.1| - 0.001 18.7 0.1 0.0045 16.6 0.0 2.1 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_14 PF13173.1 gi|557694748|ref|YP_008797802.1| - 0.0017 18.2 0.1 0.016 15.1 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_19 PF13245.1 gi|557694748|ref|YP_008797802.1| - 0.0022 17.7 0.1 0.0087 15.7 0.0 2.1 2 0 0 2 2 1 1 Part of AAA domain cobW PF02492.14 gi|557694748|ref|YP_008797802.1| - 0.011 15.2 0.2 0.029 13.8 0.1 1.7 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain Arch_ATPase PF01637.13 gi|557694748|ref|YP_008797802.1| - 0.011 15.4 0.0 0.029 14.0 0.0 1.6 1 0 0 1 1 1 0 Archaeal ATPase DEAD PF00270.24 gi|557694748|ref|YP_008797802.1| - 0.012 15.1 0.0 0.018 14.5 0.0 1.5 1 1 0 1 1 1 0 DEAD/DEAH box helicase NACHT PF05729.7 gi|557694748|ref|YP_008797802.1| - 0.014 15.0 0.0 0.027 14.1 0.0 1.5 1 0 0 1 1 1 0 NACHT domain AAA_21 PF13304.1 gi|557694748|ref|YP_008797802.1| - 0.014 15.3 0.0 0.035 14.0 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.1 gi|557694748|ref|YP_008797802.1| - 0.017 14.5 0.6 0.061 12.7 0.3 2.0 1 1 1 2 2 2 0 AAA domain ATP_bind_1 PF03029.12 gi|557694748|ref|YP_008797802.1| - 0.018 14.6 0.0 0.034 13.6 0.0 1.4 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein Mg_chelatase PF01078.16 gi|557694748|ref|YP_008797802.1| - 0.018 14.1 0.0 0.03 13.4 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI FtsK_SpoIIIE PF01580.13 gi|557694748|ref|YP_008797802.1| - 0.021 14.3 0.1 0.042 13.3 0.0 1.4 1 0 0 1 1 1 0 FtsK/SpoIIIE family SMC_N PF02463.14 gi|557694748|ref|YP_008797802.1| - 0.021 14.0 0.0 0.062 12.5 0.0 1.7 1 0 0 1 1 1 0 RecF/RecN/SMC N terminal domain AAA_5 PF07728.9 gi|557694748|ref|YP_008797802.1| - 0.021 14.5 0.0 0.042 13.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_30 PF13604.1 gi|557694748|ref|YP_008797802.1| - 0.022 14.3 0.0 0.047 13.2 0.0 1.5 1 0 0 1 1 1 0 AAA domain UPF0079 PF02367.12 gi|557694748|ref|YP_008797802.1| - 0.04 13.5 0.1 0.084 12.5 0.1 1.5 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 PhoH PF02562.11 gi|557694748|ref|YP_008797802.1| - 0.04 13.1 0.0 0.089 12.0 0.0 1.5 1 0 0 1 1 1 0 PhoH-like protein RNA12 PF10443.4 gi|557694748|ref|YP_008797802.1| - 0.041 12.3 0.0 0.069 11.6 0.0 1.3 1 0 0 1 1 1 0 RNA12 protein Pox_A32 PF04665.7 gi|557694748|ref|YP_008797802.1| - 0.041 13.1 0.0 0.11 11.7 0.0 1.6 2 0 0 2 2 1 0 Poxvirus A32 protein Miro PF08477.8 gi|557694748|ref|YP_008797802.1| - 0.045 14.2 0.0 0.12 12.9 0.0 1.7 1 0 0 1 1 1 0 Miro-like protein DUF258 PF03193.11 gi|557694748|ref|YP_008797802.1| - 0.052 12.7 0.0 0.1 11.7 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA PF00004.24 gi|557694748|ref|YP_008797802.1| - 0.071 13.3 0.0 0.19 11.9 0.0 1.8 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) NTPase_1 PF03266.10 gi|557694748|ref|YP_008797802.1| - 0.076 12.7 0.0 0.23 11.1 0.0 1.8 1 0 0 1 1 1 0 NTPase Viral_helicase1 PF01443.13 gi|557694748|ref|YP_008797802.1| - 0.084 12.3 0.0 0.14 11.6 0.0 1.3 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase SRP54 PF00448.17 gi|557694748|ref|YP_008797802.1| - 0.087 12.2 0.1 0.16 11.3 0.1 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain NB-ARC PF00931.17 gi|557694748|ref|YP_008797802.1| - 0.095 11.5 0.0 0.2 10.5 0.0 1.4 1 0 0 1 1 1 0 NB-ARC domain ResIII PF04851.10 gi|557694748|ref|YP_008797802.1| - 0.11 12.3 0.0 0.2 11.4 0.0 1.4 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit AAA_10 PF12846.2 gi|557694748|ref|YP_008797802.1| - 0.12 11.8 0.0 0.24 10.7 0.0 1.5 1 0 0 1 1 1 0 AAA-like domain SRPRB PF09439.5 gi|557694748|ref|YP_008797802.1| - 0.12 11.5 0.0 0.28 10.3 0.0 1.6 1 0 0 1 1 1 0 Signal recognition particle receptor beta subunit MMR_HSR1 PF01926.18 gi|557694748|ref|YP_008797802.1| - 0.13 12.2 0.0 0.39 10.6 0.0 1.9 2 0 0 2 2 1 0 50S ribosome-binding GTPase DUF2244 PF10003.4 gi|557694749|ref|YP_008797803.1| - 1.5 8.2 4.8 2.1 7.6 3.3 1.2 1 0 0 1 1 1 0 Integral membrane protein (DUF2244) Usp PF00582.21 gi|557694750|ref|YP_008797804.1| - 2.5e-31 108.7 2.2 3e-31 108.4 1.5 1.1 1 0 0 1 1 1 1 Universal stress protein family AP_endonuc_2 PF01261.19 gi|557694750|ref|YP_008797804.1| - 0.0019 17.5 0.0 0.0051 16.1 0.0 1.6 1 1 1 2 2 2 2 Xylose isomerase-like TIM barrel DUF3208 PF11482.3 gi|557694750|ref|YP_008797804.1| - 0.053 13.6 0.0 0.072 13.2 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3208) ABC-3 PF00950.12 gi|557694752|ref|YP_008797806.1| - 1.8e-44 152.0 33.9 2.1e-44 151.7 23.5 1.0 1 0 0 1 1 1 1 ABC 3 transport family FecCD PF01032.13 gi|557694752|ref|YP_008797806.1| - 0.0052 15.6 35.6 0.0078 15.0 24.4 1.4 1 1 0 1 1 1 1 FecCD transport family ABC_tran PF00005.22 gi|557694753|ref|YP_008797807.1| - 9.1e-28 97.2 0.0 1.2e-27 96.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|557694753|ref|YP_008797807.1| - 2.7e-12 47.2 0.0 1.2e-05 25.4 0.0 2.1 1 1 0 2 2 2 2 AAA domain AAA_10 PF12846.2 gi|557694753|ref|YP_008797807.1| - 3.6e-06 26.6 0.1 0.043 13.2 0.1 2.2 2 0 0 2 2 2 2 AAA-like domain SMC_N PF02463.14 gi|557694753|ref|YP_008797807.1| - 9e-06 25.0 0.1 0.041 13.1 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA PF00004.24 gi|557694753|ref|YP_008797807.1| - 0.00026 21.2 0.0 0.015 15.4 0.0 2.3 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_29 PF13555.1 gi|557694753|ref|YP_008797807.1| - 0.00034 20.0 0.1 0.00069 19.0 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.1 gi|557694753|ref|YP_008797807.1| - 0.00089 18.4 0.0 0.17 10.8 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain AAA_25 PF13481.1 gi|557694753|ref|YP_008797807.1| - 0.0051 16.2 0.7 0.0099 15.2 0.1 1.8 2 1 0 2 2 1 1 AAA domain PIF1 PF05970.9 gi|557694753|ref|YP_008797807.1| - 0.0053 15.7 0.1 0.032 13.2 0.0 1.9 2 0 0 2 2 2 1 PIF1-like helicase NACHT PF05729.7 gi|557694753|ref|YP_008797807.1| - 0.011 15.4 0.7 0.019 14.6 0.5 1.7 1 1 0 1 1 1 0 NACHT domain AAA_30 PF13604.1 gi|557694753|ref|YP_008797807.1| - 0.012 15.2 0.1 0.55 9.7 0.0 2.3 2 1 1 3 3 3 0 AAA domain Arch_ATPase PF01637.13 gi|557694753|ref|YP_008797807.1| - 0.019 14.6 0.0 0.034 13.8 0.0 1.6 1 1 0 1 1 1 0 Archaeal ATPase NTPase_1 PF03266.10 gi|557694753|ref|YP_008797807.1| - 0.025 14.3 0.0 0.058 13.0 0.0 1.7 1 0 0 1 1 1 0 NTPase AAA_23 PF13476.1 gi|557694753|ref|YP_008797807.1| - 0.027 14.8 0.1 0.04 14.2 0.1 1.2 1 0 0 1 1 1 0 AAA domain IstB_IS21 PF01695.12 gi|557694753|ref|YP_008797807.1| - 0.054 12.8 0.2 9.7 5.5 0.0 2.3 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_24 PF13479.1 gi|557694753|ref|YP_008797807.1| - 0.083 12.4 0.7 0.18 11.3 0.0 1.8 2 0 0 2 2 2 0 AAA domain SbcCD_C PF13558.1 gi|557694753|ref|YP_008797807.1| - 0.083 12.8 0.0 0.74 9.7 0.0 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_14 PF13173.1 gi|557694753|ref|YP_008797807.1| - 0.086 12.7 0.1 1.8 8.4 0.1 2.2 2 0 0 2 2 2 0 AAA domain MutS_V PF00488.16 gi|557694753|ref|YP_008797807.1| - 0.087 12.2 0.2 1.3 8.3 0.0 2.0 2 0 0 2 2 2 0 MutS domain V T2SE PF00437.15 gi|557694753|ref|YP_008797807.1| - 0.089 11.6 0.0 0.14 10.9 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_19 PF13245.1 gi|557694753|ref|YP_008797807.1| - 0.11 12.2 1.2 0.3 10.8 0.1 2.4 2 1 0 2 2 2 0 Part of AAA domain Miro PF08477.8 gi|557694753|ref|YP_008797807.1| - 0.13 12.7 0.0 0.22 12.0 0.0 1.4 1 0 0 1 1 1 0 Miro-like protein AAA_22 PF13401.1 gi|557694753|ref|YP_008797807.1| - 0.19 11.8 0.8 0.63 10.1 0.5 2.1 1 1 0 1 1 1 0 AAA domain TroA PF01297.12 gi|557694754|ref|YP_008797808.1| - 9.5e-58 195.4 0.0 1.1e-57 195.2 0.0 1.0 1 0 0 1 1 1 1 Periplasmic solute binding protein family RRN3 PF05327.6 gi|557694754|ref|YP_008797808.1| - 0.064 11.3 0.0 0.082 10.9 0.0 1.1 1 0 0 1 1 1 0 RNA polymerase I specific transcription initiation factor RRN3 EBP PF05241.7 gi|557694754|ref|YP_008797808.1| - 0.12 11.4 0.0 0.17 10.8 0.0 1.2 1 0 0 1 1 1 0 Emopamil binding protein Fe_dep_repr_C PF02742.10 gi|557694755|ref|YP_008797809.1| - 1.9e-18 65.9 0.2 3.1e-18 65.2 0.1 1.3 1 0 0 1 1 1 1 Iron dependent repressor, metal binding and dimerisation domain Fe_dep_repress PF01325.14 gi|557694755|ref|YP_008797809.1| - 6.1e-08 32.4 0.1 1.1e-07 31.7 0.1 1.3 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain MarR_2 PF12802.2 gi|557694755|ref|YP_008797809.1| - 0.00016 21.2 0.0 0.00027 20.5 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.1 gi|557694755|ref|YP_008797809.1| - 0.0021 18.3 0.1 0.0056 16.9 0.0 1.8 3 0 0 3 3 3 1 Winged helix DNA-binding domain GntR PF00392.16 gi|557694755|ref|YP_008797809.1| - 0.0028 17.0 0.0 0.0048 16.3 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family MarR PF01047.17 gi|557694755|ref|YP_008797809.1| - 0.0046 16.6 0.1 0.012 15.2 0.0 1.7 2 0 0 2 2 2 1 MarR family LexA_DNA_bind PF01726.11 gi|557694755|ref|YP_008797809.1| - 0.011 15.3 0.0 0.022 14.3 0.0 1.5 1 0 0 1 1 1 0 LexA DNA binding domain Lipoprotein_8 PF02030.10 gi|557694755|ref|YP_008797809.1| - 0.04 12.4 0.0 0.043 12.3 0.0 1.1 1 0 0 1 1 1 0 Hypothetical lipoprotein (MG045 family) Rrf2 PF02082.15 gi|557694755|ref|YP_008797809.1| - 0.085 12.9 0.0 0.13 12.3 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator TrmB PF01978.14 gi|557694755|ref|YP_008797809.1| - 0.1 12.3 0.0 0.15 11.8 0.0 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB NUDIX PF00293.23 gi|557694756|ref|YP_008797810.1| - 1.8e-17 63.2 0.1 2.1e-17 63.0 0.0 1.0 1 0 0 1 1 1 1 NUDIX domain AIRS PF00586.19 gi|557694757|ref|YP_008797811.1| - 2.1e-18 66.3 0.0 4.3e-18 65.3 0.0 1.5 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain AIRS_C PF02769.17 gi|557694757|ref|YP_008797811.1| - 7.3e-07 29.3 0.0 1.1e-06 28.7 0.0 1.3 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain Glycos_transf_2 PF00535.21 gi|557694758|ref|YP_008797812.1| - 2.1e-26 92.6 0.0 6e-26 91.1 0.0 1.6 2 0 0 2 2 2 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|557694758|ref|YP_008797812.1| - 5.3e-11 42.7 0.0 7.6e-11 42.2 0.0 1.4 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.1 gi|557694758|ref|YP_008797812.1| - 0.014 15.6 0.0 0.041 14.2 0.0 1.7 2 0 0 2 2 2 0 Glycosyl transferase family 2 Glyco_tranf_2_2 PF10111.4 gi|557694758|ref|YP_008797812.1| - 0.034 13.2 0.0 0.072 12.1 0.0 1.5 2 0 0 2 2 2 0 Glycosyltransferase like family 2 DnaJ PF00226.26 gi|557694759|ref|YP_008797813.1| - 4.9e-13 48.6 0.2 1.4e-12 47.1 0.0 1.9 2 0 0 2 2 2 1 DnaJ domain KIP1 PF07765.7 gi|557694759|ref|YP_008797813.1| - 0.063 13.1 1.8 4.9 7.0 0.0 2.8 3 0 0 3 3 3 0 KIP1-like protein 4HBT_2 PF13279.1 gi|557694760|ref|YP_008797814.1| - 4.2e-09 36.8 0.0 5.2e-09 36.5 0.0 1.0 1 0 0 1 1 1 1 Thioesterase-like superfamily Acyl-ACP_TE PF01643.12 gi|557694760|ref|YP_008797814.1| - 1e-06 27.9 0.0 1.1e-06 27.8 0.0 1.1 1 0 0 1 1 1 1 Acyl-ACP thioesterase 4HBT PF03061.17 gi|557694760|ref|YP_008797814.1| - 0.00068 19.7 0.0 0.00099 19.1 0.0 1.3 1 0 0 1 1 1 1 Thioesterase superfamily DUF35 PF01796.12 gi|557694761|ref|YP_008797815.1| - 3.1e-18 65.7 0.5 3.1e-18 65.7 0.3 1.5 2 0 0 2 2 2 1 DUF35 OB-fold domain DUF35_N PF12172.3 gi|557694761|ref|YP_008797815.1| - 6.2e-14 51.4 1.3 1e-13 50.7 0.9 1.4 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) Sterol-sensing PF12349.3 gi|557694761|ref|YP_008797815.1| - 0.02 14.3 0.0 0.021 14.2 0.0 1.1 1 0 0 1 1 1 0 Sterol-sensing domain of SREBP cleavage-activation DNA_RNApol_7kD PF03604.8 gi|557694761|ref|YP_008797815.1| - 1.8 8.1 4.4 1.1 8.7 0.4 2.2 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit Thiolase_C PF02803.13 gi|557694762|ref|YP_008797816.1| - 0.03 13.7 0.0 0.44 9.9 0.0 2.3 2 0 0 2 2 2 0 Thiolase, C-terminal domain Ald_Xan_dh_C2 PF02738.13 gi|557694763|ref|YP_008797817.1| - 9.1e-131 436.8 0.2 1.2e-130 436.4 0.1 1.1 1 0 0 1 1 1 1 Molybdopterin-binding domain of aldehyde dehydrogenase Ald_Xan_dh_C PF01315.17 gi|557694763|ref|YP_008797817.1| - 3.6e-31 107.5 0.0 4.3e-30 104.0 0.0 2.6 2 0 0 2 2 2 1 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain Acyl-CoA_dh_1 PF00441.19 gi|557694764|ref|YP_008797818.1| - 2.3e-38 131.6 0.0 3.1e-38 131.2 0.0 1.2 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_2 PF08028.6 gi|557694764|ref|YP_008797818.1| - 7.4e-20 71.5 1.1 1.2e-19 70.8 0.7 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.11 gi|557694764|ref|YP_008797818.1| - 2.5e-19 69.9 0.4 2.5e-19 69.9 0.3 1.9 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_M PF02770.14 gi|557694764|ref|YP_008797818.1| - 5.2e-19 67.4 0.1 1.1e-18 66.4 0.1 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain PALP PF00291.20 gi|557694765|ref|YP_008797819.1| - 3e-31 108.8 0.0 3.8e-31 108.4 0.0 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme PROL5-SMR PF15621.1 gi|557694765|ref|YP_008797819.1| - 0.42 11.0 5.6 5.7 7.4 0.9 3.2 3 1 0 3 3 3 0 Proline-rich submaxillary gland androgen-regulated family ERCC4 PF02732.10 gi|557694766|ref|YP_008797820.1| - 7.1e-13 48.5 0.0 1e-12 47.9 0.0 1.2 1 0 0 1 1 1 1 ERCC4 domain HHH_2 PF12826.2 gi|557694766|ref|YP_008797820.1| - 0.061 13.2 0.0 0.11 12.3 0.0 1.5 1 0 0 1 1 1 0 Helix-hairpin-helix motif HHH_5 PF14520.1 gi|557694766|ref|YP_008797820.1| - 0.11 12.6 0.0 0.23 11.6 0.0 1.5 1 0 0 1 1 1 0 Helix-hairpin-helix domain 5_3_exonuc PF01367.15 gi|557694766|ref|YP_008797820.1| - 0.12 12.5 0.0 0.36 11.0 0.0 1.8 2 0 0 2 2 2 0 5'-3' exonuclease, C-terminal SAM fold Peripla_BP_6 PF13458.1 gi|557694767|ref|YP_008797821.1| - 1.1e-40 140.0 2.5 1.4e-40 139.7 1.7 1.1 1 0 0 1 1 1 1 Periplasmic binding protein ANF_receptor PF01094.23 gi|557694767|ref|YP_008797821.1| - 7.6e-19 67.7 0.0 1.4e-18 66.8 0.0 1.4 1 1 0 1 1 1 1 Receptor family ligand binding region Peripla_BP_5 PF13433.1 gi|557694767|ref|YP_008797821.1| - 3.7e-13 48.9 0.0 3e-09 36.0 0.0 2.6 2 1 0 2 2 2 2 Periplasmic binding protein domain DUF2749 PF10907.3 gi|557694767|ref|YP_008797821.1| - 0.62 9.9 3.3 1.7 8.5 2.3 1.8 1 0 0 1 1 1 0 Protein of unknown function (DUF2749) BPD_transp_2 PF02653.11 gi|557694768|ref|YP_008797822.1| - 9.9e-32 109.9 41.3 1.2e-31 109.7 28.6 1.1 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component DUF4131 PF13567.1 gi|557694768|ref|YP_008797822.1| - 0.031 13.6 1.0 0.031 13.6 0.7 3.4 2 1 1 3 3 3 0 Domain of unknown function (DUF4131) DUF3529 PF12046.3 gi|557694768|ref|YP_008797822.1| - 8.1 5.4 9.3 0.89 8.5 0.8 2.4 2 1 0 2 2 2 0 Protein of unknown function (DUF3529) BPD_transp_2 PF02653.11 gi|557694769|ref|YP_008797823.1| - 3.6e-30 104.8 34.6 3.6e-30 104.8 24.0 1.5 2 0 0 2 2 2 1 Branched-chain amino acid transport system / permease component ABC_tran PF00005.22 gi|557694770|ref|YP_008797824.1| - 1.6e-27 96.4 0.0 3.4e-27 95.4 0.0 1.5 2 0 0 2 2 2 1 ABC transporter BCA_ABC_TP_C PF12399.3 gi|557694770|ref|YP_008797824.1| - 6e-06 25.7 0.0 1.3e-05 24.7 0.0 1.6 1 0 0 1 1 1 1 Branched-chain amino acid ATP-binding cassette transporter AAA_21 PF13304.1 gi|557694770|ref|YP_008797824.1| - 0.00016 21.7 0.1 0.001 19.1 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_23 PF13476.1 gi|557694770|ref|YP_008797824.1| - 0.0015 18.9 0.2 0.0028 17.9 0.1 1.4 1 0 0 1 1 1 1 AAA domain AAA_14 PF13173.1 gi|557694770|ref|YP_008797824.1| - 0.0094 15.8 0.0 0.047 13.5 0.0 2.0 2 0 0 2 2 2 1 AAA domain Zeta_toxin PF06414.7 gi|557694770|ref|YP_008797824.1| - 0.016 14.3 0.0 0.77 8.8 0.0 2.1 2 0 0 2 2 2 0 Zeta toxin AAA_29 PF13555.1 gi|557694770|ref|YP_008797824.1| - 0.017 14.6 0.1 0.035 13.6 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain Rad17 PF03215.10 gi|557694770|ref|YP_008797824.1| - 0.051 12.2 0.0 0.067 11.8 0.0 1.2 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein AAA_22 PF13401.1 gi|557694770|ref|YP_008797824.1| - 0.055 13.6 0.5 1.1 9.3 0.0 2.5 2 1 0 2 2 2 0 AAA domain Arch_ATPase PF01637.13 gi|557694770|ref|YP_008797824.1| - 0.059 13.0 0.0 0.086 12.5 0.0 1.4 1 0 0 1 1 1 0 Archaeal ATPase DUF258 PF03193.11 gi|557694770|ref|YP_008797824.1| - 0.066 12.4 0.0 0.1 11.7 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 SbcCD_C PF13558.1 gi|557694770|ref|YP_008797824.1| - 0.11 12.4 0.0 0.18 11.7 0.0 1.5 1 0 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_16 PF13191.1 gi|557694770|ref|YP_008797824.1| - 0.12 12.3 0.0 0.28 11.1 0.0 1.7 1 1 0 1 1 1 0 AAA ATPase domain ABC_tran PF00005.22 gi|557694771|ref|YP_008797825.1| - 4.8e-30 104.6 0.0 7.7e-30 103.9 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|557694771|ref|YP_008797825.1| - 4.3e-11 43.3 0.0 1.6e-05 25.0 0.1 2.1 1 1 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|557694771|ref|YP_008797825.1| - 2.4e-05 23.6 0.0 0.016 14.4 0.0 2.1 1 1 1 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_25 PF13481.1 gi|557694771|ref|YP_008797825.1| - 7.3e-05 22.2 0.5 0.00039 19.8 0.3 2.0 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|557694771|ref|YP_008797825.1| - 0.0001 22.4 0.2 0.0012 19.0 0.2 2.1 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.1 gi|557694771|ref|YP_008797825.1| - 0.00011 22.6 0.0 0.00015 22.1 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|557694771|ref|YP_008797825.1| - 0.00034 20.0 0.0 0.00063 19.2 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain IstB_IS21 PF01695.12 gi|557694771|ref|YP_008797825.1| - 0.0016 17.9 0.1 0.02 14.2 0.0 2.1 2 0 0 2 2 2 1 IstB-like ATP binding protein SRP54 PF00448.17 gi|557694771|ref|YP_008797825.1| - 0.0018 17.7 0.0 0.0032 16.9 0.0 1.4 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain AAA_17 PF13207.1 gi|557694771|ref|YP_008797825.1| - 0.0018 19.1 0.3 0.0043 17.8 0.2 2.0 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|557694771|ref|YP_008797825.1| - 0.0027 17.5 0.1 0.0092 15.8 0.1 1.9 1 1 0 1 1 1 1 AAA domain Dynamin_N PF00350.18 gi|557694771|ref|YP_008797825.1| - 0.004 17.0 0.0 0.011 15.6 0.0 1.6 1 1 0 1 1 1 1 Dynamin family AAA_16 PF13191.1 gi|557694771|ref|YP_008797825.1| - 0.0065 16.4 0.1 0.017 15.1 0.1 1.8 1 1 0 1 1 1 1 AAA ATPase domain AAA_13 PF13166.1 gi|557694771|ref|YP_008797825.1| - 0.012 14.1 0.0 1.2 7.5 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_30 PF13604.1 gi|557694771|ref|YP_008797825.1| - 0.013 15.1 0.3 0.034 13.7 0.0 1.8 2 1 0 2 2 2 0 AAA domain T2SE PF00437.15 gi|557694771|ref|YP_008797825.1| - 0.014 14.3 0.1 0.047 12.5 0.1 1.8 1 1 0 1 1 1 0 Type II/IV secretion system protein AAA_15 PF13175.1 gi|557694771|ref|YP_008797825.1| - 0.015 14.3 0.0 0.067 12.2 0.0 1.8 2 0 0 2 2 2 0 AAA ATPase domain ABC_ATPase PF09818.4 gi|557694771|ref|YP_008797825.1| - 0.016 13.8 0.1 6.8 5.1 0.0 2.9 3 0 0 3 3 3 0 Predicted ATPase of the ABC class MMR_HSR1 PF01926.18 gi|557694771|ref|YP_008797825.1| - 0.016 15.1 0.3 0.076 12.9 0.2 2.0 1 1 0 1 1 1 0 50S ribosome-binding GTPase MobB PF03205.9 gi|557694771|ref|YP_008797825.1| - 0.017 14.8 0.1 0.037 13.7 0.1 1.7 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_28 PF13521.1 gi|557694771|ref|YP_008797825.1| - 0.017 15.0 1.0 0.036 14.0 0.1 1.9 2 0 0 2 2 1 0 AAA domain PhoH PF02562.11 gi|557694771|ref|YP_008797825.1| - 0.019 14.2 0.4 0.033 13.4 0.0 1.5 2 0 0 2 2 1 0 PhoH-like protein AAA PF00004.24 gi|557694771|ref|YP_008797825.1| - 0.019 15.1 0.2 0.068 13.3 0.1 2.0 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_14 PF13173.1 gi|557694771|ref|YP_008797825.1| - 0.022 14.6 0.1 0.16 11.8 0.0 2.3 2 2 0 2 2 2 0 AAA domain DUF258 PF03193.11 gi|557694771|ref|YP_008797825.1| - 0.023 13.8 0.1 0.039 13.1 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 NACHT PF05729.7 gi|557694771|ref|YP_008797825.1| - 0.031 13.9 0.9 0.14 11.8 0.3 2.0 2 0 0 2 2 2 0 NACHT domain AAA_10 PF12846.2 gi|557694771|ref|YP_008797825.1| - 0.035 13.5 1.1 0.14 11.5 0.2 1.9 1 1 0 2 2 2 0 AAA-like domain Arch_ATPase PF01637.13 gi|557694771|ref|YP_008797825.1| - 0.037 13.7 0.0 0.07 12.8 0.0 1.5 1 1 0 1 1 1 0 Archaeal ATPase NB-ARC PF00931.17 gi|557694771|ref|YP_008797825.1| - 0.052 12.3 0.1 0.1 11.4 0.1 1.5 1 0 0 1 1 1 0 NB-ARC domain AAA_19 PF13245.1 gi|557694771|ref|YP_008797825.1| - 0.067 12.9 0.1 0.067 12.9 0.1 2.0 3 0 0 3 3 1 0 Part of AAA domain SbcCD_C PF13558.1 gi|557694771|ref|YP_008797825.1| - 0.071 13.0 0.4 0.25 11.2 0.1 2.2 2 1 0 2 2 1 0 Putative exonuclease SbcCD, C subunit PduV-EutP PF10662.4 gi|557694771|ref|YP_008797825.1| - 0.1 12.1 0.0 0.18 11.2 0.0 1.4 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation DUF3584 PF12128.3 gi|557694771|ref|YP_008797825.1| - 0.17 9.2 0.0 0.24 8.6 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) Amidohydro_1 PF01979.15 gi|557694772|ref|YP_008797826.1| - 2.5e-25 89.8 0.0 4.6e-25 88.9 0.0 1.4 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_4 PF13147.1 gi|557694772|ref|YP_008797826.1| - 1.9e-13 51.0 0.0 2.6e-12 47.3 0.0 2.5 1 1 0 1 1 1 1 Amidohydrolase Amidohydro_5 PF13594.1 gi|557694772|ref|YP_008797826.1| - 1.5e-07 31.1 0.0 6e-07 29.1 0.0 2.1 2 0 0 2 2 2 1 Amidohydrolase Amidohydro_3 PF07969.6 gi|557694772|ref|YP_008797826.1| - 1.6e-06 27.5 0.1 0.00014 21.2 0.0 2.9 3 0 0 3 3 3 1 Amidohydrolase family LAGLIDADG_3 PF14528.1 gi|557694773|ref|YP_008797827.1| - 5e-17 61.9 0.0 9.6e-13 48.1 0.0 2.2 2 0 0 2 2 2 2 LAGLIDADG-like domain LAGLIDADG_WhiA PF14527.1 gi|557694773|ref|YP_008797827.1| - 0.00071 19.4 0.0 1.4 8.7 0.0 2.2 2 0 0 2 2 2 2 WhiA LAGLIDADG-like domain YcfA PF07927.7 gi|557694773|ref|YP_008797827.1| - 0.037 13.9 5.1 0.3 11.0 0.1 3.1 2 1 0 2 2 2 0 YcfA-like protein LAGLIDADG_1 PF00961.14 gi|557694774|ref|YP_008797828.1| - 3.1e-19 69.4 0.0 3e-12 47.0 0.0 2.5 3 0 0 3 3 3 2 LAGLIDADG endonuclease LAGLIDADG_3 PF14528.1 gi|557694774|ref|YP_008797828.1| - 0.00012 22.1 0.0 0.0039 17.4 0.0 2.7 2 1 0 2 2 2 1 LAGLIDADG-like domain DUF1308 PF07000.6 gi|557694774|ref|YP_008797828.1| - 0.1 11.2 0.0 0.15 10.7 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1308) LAGLIDADG_3 PF14528.1 gi|557694775|ref|YP_008797829.1| - 2.1e-05 24.6 0.0 0.0072 16.5 0.0 2.4 2 0 0 2 2 2 2 LAGLIDADG-like domain LAGLIDADG_1 PF00961.14 gi|557694775|ref|YP_008797829.1| - 0.026 15.0 0.6 1.7 9.2 0.1 2.7 2 2 0 2 2 2 0 LAGLIDADG endonuclease DAO PF01266.19 gi|557694776|ref|YP_008797830.1| - 2e-12 46.6 1.9 4.6e-07 29.0 0.0 2.3 2 0 0 2 2 2 2 FAD dependent oxidoreductase FAD_oxidored PF12831.2 gi|557694776|ref|YP_008797830.1| - 1.1e-10 41.1 0.8 1.1e-10 41.1 0.6 1.4 2 0 0 2 2 2 1 FAD dependent oxidoreductase HI0933_like PF03486.9 gi|557694776|ref|YP_008797830.1| - 4.1e-07 28.8 4.9 0.00051 18.6 0.0 2.7 3 0 0 3 3 3 2 HI0933-like protein Thi4 PF01946.12 gi|557694776|ref|YP_008797830.1| - 1.5e-06 27.4 0.2 9.8e-06 24.8 0.1 2.3 2 0 0 2 2 2 1 Thi4 family FAD_binding_3 PF01494.14 gi|557694776|ref|YP_008797830.1| - 4.7e-06 25.9 9.3 0.0056 15.7 0.2 2.9 2 1 0 3 3 3 2 FAD binding domain Pyr_redox_2 PF07992.9 gi|557694776|ref|YP_008797830.1| - 3.4e-05 23.8 0.4 0.00043 20.2 0.3 2.7 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.7 gi|557694776|ref|YP_008797830.1| - 8.1e-05 21.7 1.5 0.00085 18.3 0.3 2.3 2 1 0 2 2 2 1 Lycopene cyclase protein FAD_binding_2 PF00890.19 gi|557694776|ref|YP_008797830.1| - 0.00058 18.8 0.3 0.0064 15.3 0.2 2.2 2 0 0 2 2 2 1 FAD binding domain Amino_oxidase PF01593.19 gi|557694776|ref|YP_008797830.1| - 0.0054 15.8 3.5 0.35 9.8 0.0 3.0 3 0 0 3 3 3 1 Flavin containing amine oxidoreductase Pyr_redox_3 PF13738.1 gi|557694776|ref|YP_008797830.1| - 0.012 15.6 3.2 0.86 9.6 0.0 2.6 3 0 0 3 3 3 0 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.1 gi|557694776|ref|YP_008797830.1| - 0.022 14.7 0.1 0.067 13.2 0.0 1.9 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain GIDA PF01134.17 gi|557694776|ref|YP_008797830.1| - 0.024 13.5 3.0 0.1 11.4 0.0 2.3 2 0 0 2 2 2 0 Glucose inhibited division protein A Pyr_redox PF00070.22 gi|557694776|ref|YP_008797830.1| - 0.036 14.4 1.1 3.9 7.9 0.1 2.6 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase TfuA PF07812.7 gi|557694776|ref|YP_008797830.1| - 0.35 10.3 4.0 0.25 10.7 0.1 2.5 3 0 0 3 3 3 0 TfuA-like protein E1_dh PF00676.15 gi|557694777|ref|YP_008797831.1| - 5.5e-88 294.5 0.0 6.3e-88 294.3 0.0 1.0 1 0 0 1 1 1 1 Dehydrogenase E1 component TPP_enzyme_C PF02775.16 gi|557694777|ref|YP_008797831.1| - 6.6e-06 25.7 1.4 8.3e-05 22.1 0.2 2.5 2 1 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Transketolase_N PF00456.16 gi|557694777|ref|YP_008797831.1| - 7.2e-06 25.0 0.0 1.1e-05 24.4 0.0 1.2 1 0 0 1 1 1 1 Transketolase, thiamine diphosphate binding domain DXP_synthase_N PF13292.1 gi|557694777|ref|YP_008797831.1| - 8.7e-06 24.8 0.0 1.4e-05 24.2 0.0 1.2 1 0 0 1 1 1 1 1-deoxy-D-xylulose-5-phosphate synthase DUF35_N PF12172.3 gi|557694778|ref|YP_008797832.1| - 7.7e-07 28.8 0.2 1.5e-06 27.9 0.2 1.4 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) DUF35 PF01796.12 gi|557694778|ref|YP_008797832.1| - 0.029 14.5 0.4 0.041 14.0 0.3 1.2 1 0 0 1 1 1 0 DUF35 OB-fold domain DUF35_N PF12172.3 gi|557694779|ref|YP_008797833.1| - 9.8e-09 34.8 3.2 1.9e-08 33.9 2.2 1.5 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) DUF35 PF01796.12 gi|557694779|ref|YP_008797833.1| - 4.5e-07 29.9 0.1 1.3e-06 28.4 0.2 1.7 2 0 0 2 2 2 1 DUF35 OB-fold domain DZR PF12773.2 gi|557694779|ref|YP_008797833.1| - 0.088 12.6 0.1 0.15 11.9 0.1 1.3 1 0 0 1 1 1 0 Double zinc ribbon Thiolase_C PF02803.13 gi|557694780|ref|YP_008797834.1| - 1.2e-05 24.7 0.0 0.019 14.3 0.0 3.3 3 0 0 3 3 3 2 Thiolase, C-terminal domain DXP_redisom_C PF08436.7 gi|557694780|ref|YP_008797834.1| - 0.04 13.8 0.0 0.52 10.2 0.0 2.5 3 0 0 3 3 3 0 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal DUF2797 PF10977.3 gi|557694780|ref|YP_008797834.1| - 0.078 12.5 0.2 0.17 11.4 0.0 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF2797) Thiolase_C PF02803.13 gi|557694781|ref|YP_008797835.1| - 2.3e-06 27.0 0.1 6.6e-06 25.5 0.0 1.8 2 0 0 2 2 2 1 Thiolase, C-terminal domain Acyl-CoA_dh_1 PF00441.19 gi|557694782|ref|YP_008797836.1| - 3.8e-32 111.4 0.4 5.8e-32 110.8 0.3 1.2 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_M PF02770.14 gi|557694782|ref|YP_008797836.1| - 8.8e-17 60.3 0.1 1.7e-16 59.4 0.1 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.6 gi|557694782|ref|YP_008797836.1| - 1.7e-12 47.7 2.1 3e-12 46.9 1.5 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.11 gi|557694782|ref|YP_008797836.1| - 3.8e-06 27.4 0.4 1.4e-05 25.6 0.0 2.0 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, N-terminal domain HpaB_N PF11794.3 gi|557694782|ref|YP_008797836.1| - 0.11 11.8 0.0 0.17 11.2 0.0 1.2 1 0 0 1 1 1 0 4-hydroxyphenylacetate 3-hydroxylase N terminal Ni_hydr_CYTB PF01292.15 gi|557694783|ref|YP_008797837.1| - 1.2e-05 24.7 8.7 0.00063 19.1 0.5 2.1 1 1 1 2 2 2 2 Prokaryotic cytochrome b561 Cytochrom_B_N PF00033.14 gi|557694783|ref|YP_008797837.1| - 3.7e-05 23.1 9.3 0.00085 18.7 0.8 2.2 2 0 0 2 2 2 2 Cytochrome b(N-terminal)/b6/petB DUF4405 PF14358.1 gi|557694783|ref|YP_008797837.1| - 0.038 14.1 12.4 0.2 11.8 1.2 2.8 3 0 0 3 3 3 0 Domain of unknown function (DUF4405) Ferric_reduct PF01794.14 gi|557694783|ref|YP_008797837.1| - 0.072 13.1 8.7 0.47 10.5 5.2 2.2 1 1 1 2 2 2 0 Ferric reductase like transmembrane component DUF1634 PF07843.6 gi|557694783|ref|YP_008797837.1| - 4.1 7.0 10.2 0.19 11.3 0.6 2.9 4 0 0 4 4 4 0 Protein of unknown function (DUF1634) AMP-binding PF00501.23 gi|557694784|ref|YP_008797838.1| - 3e-50 170.8 0.0 3.6e-50 170.5 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|557694784|ref|YP_008797838.1| - 0.00044 21.1 0.1 0.0028 18.5 0.0 2.3 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain VKOR PF07884.9 gi|557694785|ref|YP_008797839.1| - 9.3 6.1 21.8 2.7 7.8 2.6 3.1 1 1 2 3 3 3 0 Vitamin K epoxide reductase family Snf7 PF03357.16 gi|557694786|ref|YP_008797840.1| - 5.5e-07 29.1 0.4 6.4e-07 28.9 0.3 1.1 1 0 0 1 1 1 1 Snf7 DUF948 PF06103.6 gi|557694786|ref|YP_008797840.1| - 0.015 15.1 0.0 0.04 13.7 0.0 1.7 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF948) LOH1CR12 PF10158.4 gi|557694786|ref|YP_008797840.1| - 0.023 14.4 0.3 0.061 13.1 0.2 1.7 2 0 0 2 2 2 0 Tumour suppressor protein tRNA-synt_1 PF00133.17 gi|557694787|ref|YP_008797841.1| - 5.3e-57 193.1 0.0 2.7e-48 164.3 0.0 2.5 2 1 0 2 2 2 2 tRNA synthetases class I (I, L, M and V) tRNA-synt_1g PF09334.6 gi|557694787|ref|YP_008797841.1| - 4.4e-22 78.2 0.1 3.4e-10 39.1 0.0 4.2 4 0 0 4 4 4 2 tRNA synthetases class I (M) Anticodon_1 PF08264.8 gi|557694787|ref|YP_008797841.1| - 5.7e-16 58.6 0.0 1.5e-15 57.3 0.0 1.7 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1e PF01406.14 gi|557694787|ref|YP_008797841.1| - 1.8e-12 47.0 0.1 4.5e-08 32.5 0.0 3.2 2 1 1 3 3 3 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1_2 PF13603.1 gi|557694787|ref|YP_008797841.1| - 3.1e-08 33.1 0.0 7.7e-08 31.8 0.0 1.6 1 0 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1f PF01921.13 gi|557694787|ref|YP_008797841.1| - 0.024 13.3 0.0 0.1 11.2 0.0 1.9 2 0 0 2 2 2 0 tRNA synthetases class I (K) DrsE PF02635.10 gi|557694788|ref|YP_008797842.1| - 1.8e-08 34.4 0.0 2e-08 34.3 0.0 1.0 1 0 0 1 1 1 1 DsrE/DsrF-like family GMC_oxred_C PF05199.8 gi|557694788|ref|YP_008797842.1| - 0.014 15.7 0.0 0.027 14.7 0.0 1.5 1 1 0 1 1 1 0 GMC oxidoreductase NTP_transf_2 PF01909.18 gi|557694789|ref|YP_008797843.1| - 2.1e-08 34.3 1.0 3.4e-08 33.6 0.7 1.4 1 1 0 1 1 1 1 Nucleotidyltransferase domain DUF294 PF03445.8 gi|557694789|ref|YP_008797843.1| - 0.0033 17.0 0.0 0.0052 16.3 0.0 1.4 1 0 0 1 1 1 1 Putative nucleotidyltransferase DUF294 HEPN PF05168.9 gi|557694790|ref|YP_008797844.1| - 1.9e-14 53.5 0.0 2.4e-14 53.2 0.0 1.1 1 0 0 1 1 1 1 HEPN domain NMT1 PF09084.6 gi|557694791|ref|YP_008797845.1| - 1.1e-46 159.2 0.0 1.3e-46 158.8 0.0 1.1 1 0 0 1 1 1 1 NMT1/THI5 like NMT1_2 PF13379.1 gi|557694791|ref|YP_008797845.1| - 1.5e-11 44.1 0.2 6.9e-11 42.0 0.2 1.8 1 1 0 1 1 1 1 NMT1-like family SBP_bac_3 PF00497.15 gi|557694791|ref|YP_008797845.1| - 0.0063 15.7 0.0 0.016 14.4 0.0 1.9 1 1 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 OpuAC PF04069.7 gi|557694791|ref|YP_008797845.1| - 0.084 12.2 0.3 0.96 8.7 0.2 2.5 1 1 0 1 1 1 0 Substrate binding domain of ABC-type glycine betaine transport system Phosphonate-bd PF12974.2 gi|557694791|ref|YP_008797845.1| - 0.094 12.0 0.0 0.18 11.1 0.0 1.5 1 1 0 1 1 1 0 ABC transporter, phosphonate, periplasmic substrate-binding protein ABC_tran PF00005.22 gi|557694792|ref|YP_008797846.1| - 1.7e-30 106.1 0.0 2.3e-30 105.6 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|557694792|ref|YP_008797846.1| - 5.3e-12 46.3 0.0 2e-05 24.6 0.0 2.1 1 1 1 2 2 2 2 AAA domain AAA_15 PF13175.1 gi|557694792|ref|YP_008797846.1| - 4.3e-06 26.0 0.0 0.0033 16.5 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_16 PF13191.1 gi|557694792|ref|YP_008797846.1| - 0.00014 21.9 0.0 0.00022 21.2 0.0 1.3 1 0 0 1 1 1 1 AAA ATPase domain AAA_25 PF13481.1 gi|557694792|ref|YP_008797846.1| - 0.00074 18.9 0.4 0.018 14.4 0.1 2.4 2 1 0 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|557694792|ref|YP_008797846.1| - 0.00081 19.5 0.4 0.0084 16.2 0.3 2.2 1 1 0 1 1 1 1 AAA domain Arch_ATPase PF01637.13 gi|557694792|ref|YP_008797846.1| - 0.00087 19.0 0.0 0.0026 17.4 0.0 1.8 2 0 0 2 2 2 1 Archaeal ATPase DUF258 PF03193.11 gi|557694792|ref|YP_008797846.1| - 0.004 16.3 0.1 0.0062 15.7 0.1 1.2 1 0 0 1 1 1 1 Protein of unknown function, DUF258 Rad17 PF03215.10 gi|557694792|ref|YP_008797846.1| - 0.0046 15.7 0.0 0.0061 15.3 0.0 1.1 1 0 0 1 1 1 1 Rad17 cell cycle checkpoint protein SMC_N PF02463.14 gi|557694792|ref|YP_008797846.1| - 0.0053 16.0 0.0 0.059 12.5 0.0 2.2 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|557694792|ref|YP_008797846.1| - 0.0053 16.2 0.0 0.0097 15.4 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|557694792|ref|YP_008797846.1| - 0.0071 16.6 0.2 0.011 16.0 0.1 1.2 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|557694792|ref|YP_008797846.1| - 0.0096 16.7 0.6 0.026 15.3 0.4 2.0 1 1 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|557694792|ref|YP_008797846.1| - 0.0098 15.6 0.0 0.024 14.4 0.0 1.7 1 0 0 1 1 1 1 Part of AAA domain AAA_30 PF13604.1 gi|557694792|ref|YP_008797846.1| - 0.015 14.9 0.0 0.022 14.3 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA PF00004.24 gi|557694792|ref|YP_008797846.1| - 0.021 15.0 0.0 0.065 13.4 0.0 1.8 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_11 PF13086.1 gi|557694792|ref|YP_008797846.1| - 0.037 13.6 0.0 0.044 13.3 0.0 1.2 1 0 0 1 1 1 0 AAA domain ATP-synt_ab PF00006.20 gi|557694792|ref|YP_008797846.1| - 0.039 13.4 0.0 0.039 13.4 0.0 1.2 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_5 PF07728.9 gi|557694792|ref|YP_008797846.1| - 0.053 13.2 0.0 0.14 11.9 0.0 1.7 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_18 PF13238.1 gi|557694792|ref|YP_008797846.1| - 0.058 13.7 0.0 0.092 13.0 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_14 PF13173.1 gi|557694792|ref|YP_008797846.1| - 0.059 13.2 0.0 0.13 12.1 0.0 1.6 2 0 0 2 2 1 0 AAA domain ABC_ATPase PF09818.4 gi|557694792|ref|YP_008797846.1| - 0.065 11.8 0.0 3.4 6.1 0.0 2.1 2 0 0 2 2 2 0 Predicted ATPase of the ABC class NB-ARC PF00931.17 gi|557694792|ref|YP_008797846.1| - 0.092 11.5 0.4 0.21 10.3 0.0 1.7 2 0 0 2 2 2 0 NB-ARC domain RNA_helicase PF00910.17 gi|557694792|ref|YP_008797846.1| - 0.12 12.5 0.1 0.3 11.2 0.0 1.6 2 0 0 2 2 1 0 RNA helicase SbcCD_C PF13558.1 gi|557694792|ref|YP_008797846.1| - 0.15 11.9 0.0 0.34 10.8 0.0 1.6 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit KH_2 PF07650.12 gi|557694792|ref|YP_008797846.1| - 0.16 11.5 0.7 1.2 8.7 0.1 2.5 3 0 0 3 3 3 0 KH domain BPD_transp_1 PF00528.17 gi|557694793|ref|YP_008797847.1| - 1.4e-22 80.1 19.4 1.4e-22 80.1 13.5 1.9 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component DUF61 PF01886.11 gi|557694794|ref|YP_008797848.1| - 1e-22 80.4 0.0 1.2e-22 80.2 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF61 DUF543 PF04418.7 gi|557694795|ref|YP_008797849.1| - 0.17 11.8 3.4 4.5 7.2 0.3 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF543) DUF2273 PF10031.4 gi|557694795|ref|YP_008797849.1| - 0.2 11.2 0.5 0.2 11.2 0.4 3.3 2 1 0 2 2 2 0 Small integral membrane protein (DUF2273) DUF1700 PF08006.6 gi|557694795|ref|YP_008797849.1| - 1.1 8.5 9.4 1.2 8.3 6.5 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1700) DUF2784 PF10861.3 gi|557694795|ref|YP_008797849.1| - 1.1 9.0 5.0 0.87 9.3 2.7 1.5 1 1 0 1 1 1 0 Protein of Unknown function (DUF2784) FUN14 PF04930.10 gi|557694795|ref|YP_008797849.1| - 2.8 8.2 7.2 18 5.6 0.1 2.2 2 0 0 2 2 2 0 FUN14 family LRR19-TM PF15176.1 gi|557694795|ref|YP_008797849.1| - 7.7 6.2 5.7 5.6 6.7 1.7 2.0 2 0 0 2 2 2 0 Leucine-rich repeat family 19 TM domain Ribonuc_L-PSP PF01042.16 gi|557694796|ref|YP_008797850.1| - 1.8e-39 134.2 0.1 2e-39 134.1 0.0 1.0 1 0 0 1 1 1 1 Endoribonuclease L-PSP DUF162 PF02589.10 gi|557694797|ref|YP_008797851.1| - 4.5e-42 143.7 0.2 9e-42 142.7 0.1 1.5 1 0 0 1 1 1 1 Uncharacterised ACR, YkgG family COG1556 Fer4_8 PF13183.1 gi|557694797|ref|YP_008797851.1| - 3.6e-09 36.4 5.2 2.3e-08 33.9 3.9 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|557694797|ref|YP_008797851.1| - 1.2e-08 35.1 3.1 0.001 19.4 0.2 2.7 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|557694797|ref|YP_008797851.1| - 1.3e-07 31.2 5.9 1.4e-06 27.9 4.8 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|557694797|ref|YP_008797851.1| - 1.5e-07 31.6 1.5 5.1e-07 29.9 1.1 2.0 1 1 0 1 1 1 1 4Fe-4S dicluster domain CCG PF02754.11 gi|557694797|ref|YP_008797851.1| - 8e-07 28.9 0.2 6.1e-06 26.1 0.6 2.2 2 0 0 2 2 2 1 Cysteine-rich domain Fer4_9 PF13187.1 gi|557694797|ref|YP_008797851.1| - 8.1e-07 29.2 3.5 0.012 15.8 0.1 2.6 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.22 gi|557694797|ref|YP_008797851.1| - 1.1e-06 27.9 16.2 0.0011 18.4 2.5 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|557694797|ref|YP_008797851.1| - 1.5e-06 27.8 12.2 0.0026 17.5 2.0 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_15 PF13459.1 gi|557694797|ref|YP_008797851.1| - 2e-05 25.0 4.0 0.0099 16.4 0.1 3.2 3 0 0 3 3 3 2 4Fe-4S single cluster domain Fer4_4 PF12800.2 gi|557694797|ref|YP_008797851.1| - 5.5e-05 23.1 11.0 0.035 14.4 1.7 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|557694797|ref|YP_008797851.1| - 5.6e-05 23.4 7.8 0.00044 20.5 5.6 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|557694797|ref|YP_008797851.1| - 0.0002 21.6 9.4 0.0087 16.4 0.2 3.1 3 0 0 3 3 2 2 4Fe-4S single cluster domain Fer4_2 PF12797.2 gi|557694797|ref|YP_008797851.1| - 0.00023 20.8 13.1 0.016 15.1 1.7 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_20 PF14691.1 gi|557694797|ref|YP_008797851.1| - 0.00041 19.9 0.9 0.038 13.6 0.1 2.5 2 0 0 2 2 2 1 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_3 PF12798.2 gi|557694797|ref|YP_008797851.1| - 0.002 18.5 15.9 0.027 15.0 2.6 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain DUF460 PF04312.8 gi|557694797|ref|YP_008797851.1| - 0.0096 15.4 0.0 0.023 14.2 0.0 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF460) Fer4_21 PF14697.1 gi|557694797|ref|YP_008797851.1| - 0.017 14.9 12.5 0.52 10.2 8.8 2.6 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|557694797|ref|YP_008797851.1| - 0.043 14.5 10.7 1.1 10.0 8.0 2.4 1 1 1 2 2 2 0 4Fe-4S double cluster binding domain DUF162 PF02589.10 gi|557694798|ref|YP_008797852.1| - 4.5e-24 84.9 0.1 7.2e-24 84.3 0.1 1.3 1 1 0 1 1 1 1 Uncharacterised ACR, YkgG family COG1556 Peripla_BP_4 PF13407.1 gi|557694798|ref|YP_008797852.1| - 0.034 13.5 0.0 0.16 11.3 0.0 1.8 1 1 1 2 2 2 0 Periplasmic binding protein domain DUF2023 PF09633.5 gi|557694798|ref|YP_008797852.1| - 0.059 13.3 0.0 0.1 12.5 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2023) Trm112p PF03966.11 gi|557694799|ref|YP_008797853.1| - 1.7e-11 44.2 0.4 3.4e-11 43.3 0.3 1.5 1 0 0 1 1 1 1 Trm112p-like protein Prok-RING_1 PF14446.1 gi|557694799|ref|YP_008797853.1| - 0.05 13.3 0.8 3.7 7.3 0.0 2.4 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 Pox_vIL-18BP PF05566.7 gi|557694799|ref|YP_008797853.1| - 0.085 12.8 0.0 0.11 12.5 0.0 1.1 1 0 0 1 1 1 0 Orthopoxvirus interleukin 18 binding protein zf-Dof PF02701.10 gi|557694799|ref|YP_008797853.1| - 0.13 12.1 0.6 0.27 11.1 0.1 1.8 1 1 1 2 2 2 0 Dof domain, zinc finger Glyco_tranf_2_3 PF13641.1 gi|557694800|ref|YP_008797854.1| - 3.8e-44 151.1 0.0 5.1e-44 150.7 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glycos_transf_2 PF00535.21 gi|557694800|ref|YP_008797854.1| - 2.7e-39 134.5 0.0 4e-39 134.0 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_trans_2_3 PF13632.1 gi|557694800|ref|YP_008797854.1| - 3.6e-28 98.5 0.6 3.6e-28 98.5 0.4 2.3 3 0 0 3 3 3 1 Glycosyl transferase family group 2 Glyco_transf_21 PF13506.1 gi|557694800|ref|YP_008797854.1| - 1.6e-15 56.7 0.1 2.6e-15 56.1 0.1 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 21 Glyco_tranf_2_2 PF10111.4 gi|557694800|ref|YP_008797854.1| - 6.4e-10 38.5 0.0 1.5e-09 37.3 0.0 1.5 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Chitin_synth_2 PF03142.10 gi|557694800|ref|YP_008797854.1| - 7.5e-10 37.8 0.2 2.4e-08 32.8 0.0 2.9 2 1 1 3 3 3 1 Chitin synthase Glyco_tranf_2_4 PF13704.1 gi|557694800|ref|YP_008797854.1| - 2.9e-05 24.2 0.0 7.2e-05 23.0 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_5 PF13712.1 gi|557694800|ref|YP_008797854.1| - 0.0011 18.2 0.0 0.059 12.6 0.0 2.1 1 1 1 2 2 2 1 Glycosyltransferase like family RrnaAD PF00398.15 gi|557694801|ref|YP_008797855.1| - 3.9e-20 71.9 0.0 6.9e-20 71.1 0.0 1.4 2 0 0 2 2 2 1 Ribosomal RNA adenine dimethylase Methyltransf_26 PF13659.1 gi|557694801|ref|YP_008797855.1| - 4e-10 39.7 0.0 4.5e-09 36.3 0.0 2.1 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|557694801|ref|YP_008797855.1| - 7.6e-07 29.7 0.0 1.1e-06 29.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.10 gi|557694801|ref|YP_008797855.1| - 4.4e-06 26.2 0.0 3.7e-05 23.1 0.0 2.0 2 0 0 2 2 2 1 Conserved hypothetical protein 95 MTS PF05175.9 gi|557694801|ref|YP_008797855.1| - 9.6e-06 25.0 0.0 1.7e-05 24.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Met_10 PF02475.11 gi|557694801|ref|YP_008797855.1| - 8e-05 22.3 0.3 0.00048 19.7 0.1 2.0 2 0 0 2 2 2 1 Met-10+ like-protein Methyltransf_31 PF13847.1 gi|557694801|ref|YP_008797855.1| - 0.00011 21.8 0.0 0.00015 21.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.8 gi|557694801|ref|YP_008797855.1| - 0.00037 19.7 0.0 0.00055 19.1 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) UPF0020 PF01170.13 gi|557694801|ref|YP_008797855.1| - 0.0023 17.5 0.0 0.036 13.6 0.0 2.2 2 1 0 2 2 2 1 Putative RNA methylase family UPF0020 Methyltransf_11 PF08241.7 gi|557694801|ref|YP_008797855.1| - 0.014 15.8 0.0 0.027 14.9 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_25 PF13649.1 gi|557694801|ref|YP_008797855.1| - 0.026 14.8 0.0 0.051 13.9 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain TFR_dimer PF04253.10 gi|557694801|ref|YP_008797855.1| - 0.033 13.7 0.0 0.068 12.7 0.0 1.5 1 0 0 1 1 1 0 Transferrin receptor-like dimerisation domain SAM_MT PF04445.8 gi|557694801|ref|YP_008797855.1| - 0.036 13.2 0.1 0.054 12.6 0.0 1.2 1 0 0 1 1 1 0 Putative SAM-dependent methyltransferase Methyltransf_32 PF13679.1 gi|557694801|ref|YP_008797855.1| - 0.089 12.4 0.0 0.16 11.6 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain DREV PF05219.7 gi|557694801|ref|YP_008797855.1| - 0.1 11.4 0.0 0.15 10.8 0.0 1.2 1 0 0 1 1 1 0 DREV methyltransferase PCMT PF01135.14 gi|557694801|ref|YP_008797855.1| - 0.14 11.6 0.1 0.34 10.4 0.0 1.6 2 0 0 2 2 2 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_23 PF13489.1 gi|557694801|ref|YP_008797855.1| - 0.16 11.6 0.0 0.33 10.6 0.0 1.5 2 0 0 2 2 2 0 Methyltransferase domain Methyltransf_15 PF09445.5 gi|557694801|ref|YP_008797855.1| - 0.16 11.5 0.0 0.28 10.7 0.0 1.7 1 1 0 1 1 1 0 RNA cap guanine-N2 methyltransferase Macro PF01661.16 gi|557694803|ref|YP_008797857.1| - 1.5e-37 128.1 0.0 1.8e-37 127.8 0.0 1.1 1 0 0 1 1 1 1 Macro domain Macro_2 PF14519.1 gi|557694803|ref|YP_008797857.1| - 0.13 11.3 0.0 0.51 9.3 0.0 1.7 2 0 0 2 2 2 0 Macro-like domain zinc_ribbon_4 PF13717.1 gi|557694804|ref|YP_008797858.1| - 0.00018 21.0 0.2 0.21 11.2 0.1 2.2 1 1 1 2 2 2 2 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|557694804|ref|YP_008797858.1| - 0.00024 20.6 0.2 0.21 11.2 0.1 2.2 1 1 1 2 2 2 2 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|557694804|ref|YP_008797858.1| - 0.00041 19.4 2.5 0.1 11.8 0.1 2.2 2 0 0 2 2 2 2 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|557694804|ref|YP_008797858.1| - 0.00053 19.3 3.7 0.0068 15.8 2.6 2.1 1 1 1 2 2 2 2 zinc-ribbon domain Peptidase_M50B PF13398.1 gi|557694804|ref|YP_008797858.1| - 0.00057 19.3 4.6 0.00072 19.0 3.2 1.0 1 0 0 1 1 1 1 Peptidase M50B-like zf-NADH-PPase PF09297.6 gi|557694804|ref|YP_008797858.1| - 0.0022 17.4 3.9 0.12 11.9 0.1 2.9 3 0 0 3 3 3 1 NADH pyrophosphatase zinc ribbon domain TF_Zn_Ribbon PF08271.7 gi|557694804|ref|YP_008797858.1| - 0.0024 17.1 1.3 1.1 8.5 0.1 2.2 2 0 0 2 2 2 2 TFIIB zinc-binding PhnA_Zn_Ribbon PF08274.7 gi|557694804|ref|YP_008797858.1| - 0.0035 17.0 0.7 0.3 10.9 0.0 2.2 2 0 0 2 2 2 1 PhnA Zinc-Ribbon FYDLN_acid PF09538.5 gi|557694804|ref|YP_008797858.1| - 0.0049 17.4 0.5 0.022 15.3 0.3 1.8 1 1 0 1 1 1 1 Protein of unknown function (FYDLN_acid) zf-HYPF PF07503.7 gi|557694804|ref|YP_008797858.1| - 0.0054 16.1 1.7 2 7.8 0.9 2.2 1 1 1 2 2 2 2 HypF finger HypA PF01155.14 gi|557694804|ref|YP_008797858.1| - 0.0075 15.9 0.3 0.01 15.4 0.2 1.2 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family DZR PF12773.2 gi|557694804|ref|YP_008797858.1| - 0.0091 15.7 0.7 0.015 15.1 0.5 1.3 1 0 0 1 1 1 1 Double zinc ribbon DUF1272 PF06906.6 gi|557694804|ref|YP_008797858.1| - 0.037 13.8 1.0 0.062 13.1 0.7 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1272) ADK_lid PF05191.9 gi|557694804|ref|YP_008797858.1| - 0.045 13.4 0.3 6.3 6.5 0.0 2.4 2 0 0 2 2 2 0 Adenylate kinase, active site lid CpXC PF14353.1 gi|557694804|ref|YP_008797858.1| - 0.047 13.6 1.5 1.6 8.7 0.1 2.1 1 1 1 2 2 2 0 CpXC protein Zn-ribbon_8 PF09723.5 gi|557694804|ref|YP_008797858.1| - 0.063 13.2 3.1 0.25 11.3 2.2 1.9 1 1 0 1 1 1 0 Zinc ribbon domain DUF2039 PF10217.4 gi|557694804|ref|YP_008797858.1| - 0.076 13.0 0.2 0.096 12.7 0.1 1.1 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2039) NOB1_Zn_bind PF08772.6 gi|557694804|ref|YP_008797858.1| - 0.096 12.5 0.7 0.14 11.9 0.5 1.2 1 0 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like Prok-RING_1 PF14446.1 gi|557694804|ref|YP_008797858.1| - 0.11 12.2 2.1 0.43 10.3 1.5 1.7 1 1 0 1 1 1 0 Prokaryotic RING finger family 1 A2L_zn_ribbon PF08792.5 gi|557694804|ref|YP_008797858.1| - 0.12 11.8 4.0 0.87 9.1 2.7 2.0 1 1 0 1 1 1 0 A2L zinc ribbon domain Nudix_N_2 PF14803.1 gi|557694804|ref|YP_008797858.1| - 0.17 11.6 0.6 13 5.6 0.0 2.3 2 0 0 2 2 2 0 Nudix N-terminal Zn_Tnp_IS1595 PF12760.2 gi|557694804|ref|YP_008797858.1| - 1.5 8.6 4.3 10 6.0 0.3 2.3 1 1 1 2 2 2 0 Transposase zinc-ribbon domain DUF35_N PF12172.3 gi|557694804|ref|YP_008797858.1| - 1.8 8.5 4.0 22 5.1 2.8 2.3 1 1 0 1 1 1 0 Rubredoxin-like zinc ribbon domain (DUF35_N) RseC_MucC PF04246.7 gi|557694804|ref|YP_008797858.1| - 8.2 5.9 9.2 20 4.7 0.2 2.1 1 1 1 2 2 2 0 Positive regulator of sigma(E), RseC/MucC Rieske PF00355.21 gi|557694805|ref|YP_008797859.1| - 4.8e-15 54.9 0.0 5.3e-15 54.7 0.0 1.0 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain Rieske_2 PF13806.1 gi|557694805|ref|YP_008797859.1| - 3.2e-08 33.2 0.0 3.6e-08 33.0 0.0 1.0 1 0 0 1 1 1 1 Rieske-like [2Fe-2S] domain Pyr_redox_2 PF07992.9 gi|557694806|ref|YP_008797860.1| - 4e-30 105.2 8.3 1e-28 100.5 5.7 3.2 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|557694806|ref|YP_008797860.1| - 2.8e-18 66.0 7.2 8e-17 61.4 0.6 2.9 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|557694806|ref|YP_008797860.1| - 1.6e-17 64.2 1.2 1.2e-12 48.3 0.0 3.1 2 1 1 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|557694806|ref|YP_008797860.1| - 5.5e-10 38.6 11.4 0.00088 18.2 0.0 4.0 3 1 1 4 4 4 3 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|557694806|ref|YP_008797860.1| - 7.9e-07 28.2 8.4 0.00011 21.2 0.6 3.3 2 1 2 4 4 4 2 FAD binding domain FAD_oxidored PF12831.2 gi|557694806|ref|YP_008797860.1| - 1.6e-06 27.4 3.2 4.3e-06 26.0 0.4 2.1 2 0 0 2 2 2 1 FAD dependent oxidoreductase GIDA PF01134.17 gi|557694806|ref|YP_008797860.1| - 8.3e-05 21.6 14.9 0.00019 20.4 1.3 4.5 2 2 3 5 5 5 1 Glucose inhibited division protein A Lycopene_cycl PF05834.7 gi|557694806|ref|YP_008797860.1| - 0.00016 20.7 1.5 0.051 12.4 0.1 3.6 3 1 1 4 4 4 1 Lycopene cyclase protein Thi4 PF01946.12 gi|557694806|ref|YP_008797860.1| - 0.00019 20.6 4.6 0.00089 18.4 0.4 2.7 2 1 0 2 2 2 1 Thi4 family NAD_binding_7 PF13241.1 gi|557694806|ref|YP_008797860.1| - 0.00058 20.0 2.3 0.34 11.1 0.2 2.7 2 1 0 2 2 2 2 Putative NAD(P)-binding FAD_binding_3 PF01494.14 gi|557694806|ref|YP_008797860.1| - 0.00081 18.5 2.3 0.16 10.9 0.1 3.0 2 1 1 3 3 3 1 FAD binding domain K_oxygenase PF13434.1 gi|557694806|ref|YP_008797860.1| - 0.00088 18.2 1.6 1.2 7.9 0.0 3.1 1 1 1 3 3 3 2 L-lysine 6-monooxygenase (NADPH-requiring) HI0933_like PF03486.9 gi|557694806|ref|YP_008797860.1| - 0.001 17.6 5.7 0.001 17.5 0.3 3.2 4 1 1 5 5 5 1 HI0933-like protein Shikimate_DH PF01488.15 gi|557694806|ref|YP_008797860.1| - 0.0035 17.4 3.5 0.083 12.9 0.2 2.8 2 1 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase NAD_binding_8 PF13450.1 gi|557694806|ref|YP_008797860.1| - 0.012 15.6 0.7 0.2 11.7 0.1 2.3 2 0 0 2 2 2 0 NAD(P)-binding Rossmann-like domain Trp_halogenase PF04820.9 gi|557694806|ref|YP_008797860.1| - 0.019 13.5 2.4 0.036 12.7 0.6 2.0 2 0 0 2 2 2 0 Tryptophan halogenase DUF3184 PF11380.3 gi|557694806|ref|YP_008797860.1| - 0.064 11.1 0.0 0.097 10.5 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3184) TrkA_N PF02254.13 gi|557694806|ref|YP_008797860.1| - 0.14 12.1 1.8 2 8.4 0.0 3.0 2 1 0 2 2 2 0 TrkA-N domain NAD_binding_9 PF13454.1 gi|557694806|ref|YP_008797860.1| - 1.6 8.4 3.9 34 4.1 0.3 3.1 3 0 0 3 3 3 0 FAD-NAD(P)-binding Rieske PF00355.21 gi|557694807|ref|YP_008797861.1| - 1.2e-19 69.6 0.0 1.6e-19 69.2 0.0 1.1 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain Rieske_2 PF13806.1 gi|557694807|ref|YP_008797861.1| - 6e-17 61.2 0.0 7.8e-17 60.8 0.0 1.1 1 0 0 1 1 1 1 Rieske-like [2Fe-2S] domain Urocanase PF01175.13 gi|557694807|ref|YP_008797861.1| - 0.12 10.3 0.0 0.12 10.3 0.0 1.1 1 0 0 1 1 1 0 Urocanase Methyltransf_31 PF13847.1 gi|557694808|ref|YP_008797862.1| - 3.2e-16 59.2 0.0 4.2e-16 58.8 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|557694808|ref|YP_008797862.1| - 2.3e-12 46.5 0.0 2.9e-12 46.2 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.7 gi|557694808|ref|YP_008797862.1| - 3.3e-11 43.5 0.0 4.8e-11 42.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|557694808|ref|YP_008797862.1| - 3.9e-09 36.8 0.0 5.9e-09 36.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|557694808|ref|YP_008797862.1| - 5.4e-09 36.6 0.0 7.7e-09 36.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|557694808|ref|YP_008797862.1| - 1.2e-07 31.9 0.0 1.7e-07 31.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.14 gi|557694808|ref|YP_008797862.1| - 3.3e-07 30.0 0.0 4.9e-07 29.5 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_23 PF13489.1 gi|557694808|ref|YP_008797862.1| - 5.2e-07 29.5 0.0 6.7e-06 25.9 0.0 2.0 1 1 1 2 2 2 1 Methyltransferase domain Methyltransf_32 PF13679.1 gi|557694808|ref|YP_008797862.1| - 4e-06 26.5 0.0 5.2e-06 26.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|557694808|ref|YP_008797862.1| - 8.4e-06 25.2 0.0 1.2e-05 24.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_26 PF13659.1 gi|557694808|ref|YP_008797862.1| - 4.3e-05 23.5 0.0 6.1e-05 23.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.15 gi|557694808|ref|YP_008797862.1| - 0.00017 20.7 0.0 0.00021 20.4 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_4 PF02390.12 gi|557694808|ref|YP_008797862.1| - 0.0024 16.9 0.0 0.0036 16.3 0.0 1.3 1 0 0 1 1 1 1 Putative methyltransferase Fibrillarin PF01269.12 gi|557694808|ref|YP_008797862.1| - 0.004 16.1 0.0 0.083 11.7 0.0 2.1 2 0 0 2 2 2 1 Fibrillarin FmrO PF07091.6 gi|557694808|ref|YP_008797862.1| - 0.01 14.8 0.0 0.012 14.5 0.0 1.1 1 0 0 1 1 1 0 Ribosomal RNA methyltransferase (FmrO) PrmA PF06325.8 gi|557694808|ref|YP_008797862.1| - 0.018 14.1 0.0 0.023 13.8 0.0 1.1 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_3 PF01596.12 gi|557694808|ref|YP_008797862.1| - 0.018 14.0 0.0 0.024 13.7 0.0 1.2 1 0 0 1 1 1 0 O-methyltransferase Cons_hypoth95 PF03602.10 gi|557694808|ref|YP_008797862.1| - 0.063 12.6 0.0 0.084 12.2 0.0 1.1 1 0 0 1 1 1 0 Conserved hypothetical protein 95 DOT1 PF08123.8 gi|557694808|ref|YP_008797862.1| - 0.08 12.2 0.0 0.1 11.9 0.0 1.2 1 0 0 1 1 1 0 Histone methylation protein DOT1 DREV PF05219.7 gi|557694808|ref|YP_008797862.1| - 0.086 11.7 0.0 0.45 9.3 0.0 1.8 1 1 0 2 2 2 0 DREV methyltransferase FtsJ PF01728.14 gi|557694808|ref|YP_008797862.1| - 0.14 12.1 0.0 0.15 12.0 0.0 1.2 1 0 0 1 1 1 0 FtsJ-like methyltransferase DNA_pol_E_B PF04042.11 gi|557694809|ref|YP_008797863.1| - 2.8e-17 62.6 0.0 4.6e-17 61.9 0.0 1.3 1 0 0 1 1 1 1 DNA polymerase alpha/epsilon subunit B Metallophos_2 PF12850.2 gi|557694809|ref|YP_008797863.1| - 2e-08 34.2 0.0 3.4e-08 33.4 0.0 1.3 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|557694809|ref|YP_008797863.1| - 3.3e-07 29.9 0.1 5.7e-07 29.1 0.0 1.4 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase tRNA_anti-codon PF01336.20 gi|557694809|ref|YP_008797863.1| - 0.025 14.4 0.0 0.049 13.4 0.0 1.5 1 0 0 1 1 1 0 OB-fold nucleic acid binding domain PQQ_2 PF13360.1 gi|557694810|ref|YP_008797864.1| - 1.5e-09 37.7 0.1 1.8e-06 27.5 0.1 2.8 1 1 2 3 3 3 2 PQQ-like domain DUF4660 PF15559.1 gi|557694810|ref|YP_008797864.1| - 0.073 13.1 0.0 0.16 12.0 0.0 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4660) DUF2428 PF10350.4 gi|557694811|ref|YP_008797865.1| - 0.05 12.6 0.0 0.056 12.4 0.0 1.0 1 0 0 1 1 1 0 Putative death-receptor fusion protein (DUF2428) Acetyltransf_11 PF13720.1 gi|557694811|ref|YP_008797865.1| - 0.12 12.6 0.2 0.19 11.9 0.1 1.5 1 1 0 1 1 1 0 Udp N-acetylglucosamine O-acyltransferase; Domain 2 ABC_tran PF00005.22 gi|557694812|ref|YP_008797866.1| - 1.1e-29 103.5 0.0 1.8e-29 102.8 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|557694812|ref|YP_008797866.1| - 7.7e-15 55.6 0.6 1.1e-06 28.9 0.1 2.1 2 0 0 2 2 2 2 AAA domain AAA_23 PF13476.1 gi|557694812|ref|YP_008797866.1| - 7.4e-06 26.4 0.1 1.3e-05 25.6 0.1 1.3 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|557694812|ref|YP_008797866.1| - 1.9e-05 24.0 0.1 4.1e-05 23.0 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.14 gi|557694812|ref|YP_008797866.1| - 0.00024 20.3 0.2 0.094 11.9 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_16 PF13191.1 gi|557694812|ref|YP_008797866.1| - 0.00092 19.2 0.2 0.0034 17.4 0.1 1.8 1 1 0 1 1 1 1 AAA ATPase domain AAA_25 PF13481.1 gi|557694812|ref|YP_008797866.1| - 0.0012 18.3 0.2 0.011 15.1 0.1 2.1 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|557694812|ref|YP_008797866.1| - 0.0021 18.1 0.7 0.021 14.9 0.5 2.2 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|557694812|ref|YP_008797866.1| - 0.0022 17.1 0.0 0.0055 15.8 0.0 1.6 2 0 0 2 2 2 1 AAA ATPase domain DUF258 PF03193.11 gi|557694812|ref|YP_008797866.1| - 0.0058 15.8 0.0 0.0095 15.1 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_30 PF13604.1 gi|557694812|ref|YP_008797866.1| - 0.026 14.0 0.0 0.25 10.8 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_28 PF13521.1 gi|557694812|ref|YP_008797866.1| - 0.032 14.2 0.0 0.048 13.6 0.0 1.5 1 0 0 1 1 1 0 AAA domain SRP54 PF00448.17 gi|557694812|ref|YP_008797866.1| - 0.032 13.6 0.4 0.081 12.3 0.1 1.7 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain Arch_ATPase PF01637.13 gi|557694812|ref|YP_008797866.1| - 0.034 13.8 0.1 0.42 10.2 0.0 2.0 2 0 0 2 2 2 0 Archaeal ATPase AAA_10 PF12846.2 gi|557694812|ref|YP_008797866.1| - 0.041 13.3 0.8 2.6 7.3 0.3 2.2 1 1 0 2 2 2 0 AAA-like domain MMR_HSR1 PF01926.18 gi|557694812|ref|YP_008797866.1| - 0.073 13.0 0.9 0.55 10.2 0.7 2.1 1 1 0 1 1 1 0 50S ribosome-binding GTPase UPF0079 PF02367.12 gi|557694812|ref|YP_008797866.1| - 0.093 12.3 0.1 0.17 11.5 0.0 1.4 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 AAA_13 PF13166.1 gi|557694812|ref|YP_008797866.1| - 0.11 10.9 0.1 0.34 9.3 0.0 1.6 2 0 0 2 2 2 0 AAA domain PduV-EutP PF10662.4 gi|557694812|ref|YP_008797866.1| - 0.11 11.9 0.2 0.2 11.1 0.1 1.3 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation AAA_19 PF13245.1 gi|557694812|ref|YP_008797866.1| - 0.14 11.9 0.4 0.33 10.7 0.1 1.8 2 0 0 2 2 1 0 Part of AAA domain Mg_chelatase PF01078.16 gi|557694812|ref|YP_008797866.1| - 0.15 11.1 0.0 0.27 10.3 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_33 PF13671.1 gi|557694812|ref|YP_008797866.1| - 0.18 11.7 0.2 0.42 10.4 0.1 1.6 1 0 0 1 1 1 0 AAA domain cobW PF02492.14 gi|557694812|ref|YP_008797866.1| - 0.2 11.0 0.9 0.4 10.1 0.6 1.5 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain ABC_tran PF00005.22 gi|557694813|ref|YP_008797867.1| - 2.3e-25 89.4 0.0 3e-25 89.0 0.0 1.1 1 0 0 1 1 1 1 ABC transporter BCA_ABC_TP_C PF12399.3 gi|557694813|ref|YP_008797867.1| - 2.3e-09 36.6 0.5 6.3e-09 35.3 0.0 2.0 2 0 0 2 2 2 1 Branched-chain amino acid ATP-binding cassette transporter AAA_21 PF13304.1 gi|557694813|ref|YP_008797867.1| - 0.00013 22.0 0.1 0.0015 18.5 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_25 PF13481.1 gi|557694813|ref|YP_008797867.1| - 0.00015 21.2 1.4 0.0011 18.3 1.0 2.0 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|557694813|ref|YP_008797867.1| - 0.00015 21.8 1.0 0.0036 17.4 0.7 2.1 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|557694813|ref|YP_008797867.1| - 0.0024 17.3 0.0 0.0062 16.0 0.0 1.7 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA PF00004.24 gi|557694813|ref|YP_008797867.1| - 0.0049 17.0 0.3 0.095 12.9 0.2 2.3 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) ABC_ATPase PF09818.4 gi|557694813|ref|YP_008797867.1| - 0.0049 15.5 3.7 0.0056 15.3 0.2 2.1 2 0 0 2 2 2 1 Predicted ATPase of the ABC class AAA_23 PF13476.1 gi|557694813|ref|YP_008797867.1| - 0.005 17.1 0.2 0.0084 16.4 0.2 1.2 1 0 0 1 1 1 1 AAA domain AAA_30 PF13604.1 gi|557694813|ref|YP_008797867.1| - 0.0071 15.9 0.0 0.013 15.1 0.0 1.4 1 1 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|557694813|ref|YP_008797867.1| - 0.0087 15.7 0.3 0.29 10.9 0.1 2.4 2 0 0 2 2 2 1 Part of AAA domain UPF0079 PF02367.12 gi|557694813|ref|YP_008797867.1| - 0.019 14.6 0.2 0.063 12.9 0.0 1.9 2 0 0 2 2 2 0 Uncharacterised P-loop hydrolase UPF0079 SMC_N PF02463.14 gi|557694813|ref|YP_008797867.1| - 0.02 14.1 1.0 1.5 8.0 0.2 2.2 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain T2SE PF00437.15 gi|557694813|ref|YP_008797867.1| - 0.035 13.0 0.0 0.056 12.3 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein DUF258 PF03193.11 gi|557694813|ref|YP_008797867.1| - 0.077 12.1 0.1 0.12 11.5 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_14 PF13173.1 gi|557694813|ref|YP_008797867.1| - 0.083 12.7 0.4 4.8 7.1 0.1 2.4 2 1 0 2 2 2 0 AAA domain MobB PF03205.9 gi|557694813|ref|YP_008797867.1| - 0.089 12.4 0.0 0.22 11.2 0.0 1.7 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B NB-ARC PF00931.17 gi|557694813|ref|YP_008797867.1| - 0.14 11.0 0.9 1 8.1 0.2 2.0 2 0 0 2 2 2 0 NB-ARC domain MMR_HSR1 PF01926.18 gi|557694813|ref|YP_008797867.1| - 0.16 11.9 0.4 0.24 11.3 0.3 1.7 1 1 0 1 1 1 0 50S ribosome-binding GTPase BPD_transp_2 PF02653.11 gi|557694814|ref|YP_008797868.1| - 1e-34 119.7 33.7 1.4e-34 119.2 23.4 1.2 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component BPD_transp_2 PF02653.11 gi|557694815|ref|YP_008797869.1| - 1.3e-33 116.0 36.9 1.5e-33 115.8 25.6 1.0 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component Peripla_BP_6 PF13458.1 gi|557694816|ref|YP_008797870.1| - 7.8e-58 196.4 1.2 9.3e-58 196.2 0.8 1.0 1 0 0 1 1 1 1 Periplasmic binding protein Peripla_BP_5 PF13433.1 gi|557694816|ref|YP_008797870.1| - 3.1e-24 85.4 0.0 4e-24 85.0 0.0 1.1 1 0 0 1 1 1 1 Periplasmic binding protein domain ANF_receptor PF01094.23 gi|557694816|ref|YP_008797870.1| - 3.6e-15 55.6 0.0 4.3e-15 55.3 0.0 1.2 1 0 0 1 1 1 1 Receptor family ligand binding region YjeF_N PF03853.10 gi|557694817|ref|YP_008797871.1| - 2.1e-41 141.3 0.3 2.9e-41 140.9 0.2 1.2 1 0 0 1 1 1 1 YjeF-related protein N-terminus NAD_binding_10 PF13460.1 gi|557694817|ref|YP_008797871.1| - 0.16 11.9 0.4 0.51 10.3 0.3 1.9 1 1 0 1 1 1 0 NADH(P)-binding tRNA-synt_2b PF00587.20 gi|557694818|ref|YP_008797872.1| - 3e-35 121.3 0.0 6.6e-35 120.2 0.0 1.6 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) Seryl_tRNA_N PF02403.17 gi|557694818|ref|YP_008797872.1| - 8.8e-26 90.0 3.2 1.3e-25 89.4 2.2 1.3 1 0 0 1 1 1 1 Seryl-tRNA synthetase N-terminal domain HOOK PF05622.7 gi|557694818|ref|YP_008797872.1| - 0.0021 15.9 1.1 0.003 15.4 0.7 1.1 1 0 0 1 1 1 1 HOOK protein DUF677 PF05055.7 gi|557694818|ref|YP_008797872.1| - 0.036 12.7 0.8 0.056 12.1 0.5 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF677) TMF_TATA_bd PF12325.3 gi|557694818|ref|YP_008797872.1| - 0.046 13.4 5.4 0.095 12.4 3.7 1.4 1 0 0 1 1 1 0 TATA element modulatory factor 1 TATA binding MtrB PF05440.7 gi|557694818|ref|YP_008797872.1| - 0.064 13.2 0.1 0.23 11.5 0.0 1.9 2 0 0 2 2 2 0 Tetrahydromethanopterin S-methyltransferase subunit B DltD_M PF04918.7 gi|557694818|ref|YP_008797872.1| - 0.08 13.1 0.4 0.13 12.3 0.3 1.2 1 0 0 1 1 1 0 DltD central region Baculo_PEP_C PF04513.7 gi|557694818|ref|YP_008797872.1| - 0.14 11.9 0.1 0.27 11.0 0.0 1.4 1 0 0 1 1 1 0 Baculovirus polyhedron envelope protein, PEP, C terminus V_ATPase_I PF01496.14 gi|557694818|ref|YP_008797872.1| - 0.61 7.8 1.9 0.89 7.3 1.3 1.2 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family DUF342 PF03961.8 gi|557694818|ref|YP_008797872.1| - 0.62 8.4 2.9 0.89 7.8 2.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF342) APG6 PF04111.7 gi|557694818|ref|YP_008797872.1| - 0.73 8.8 3.3 1.4 7.9 2.3 1.3 1 0 0 1 1 1 0 Autophagy protein Apg6 Macoilin PF09726.4 gi|557694818|ref|YP_008797872.1| - 2.9 6.0 4.6 4.2 5.5 3.2 1.1 1 0 0 1 1 1 0 Transmembrane protein FtsX PF02687.16 gi|557694819|ref|YP_008797873.1| - 5.9e-24 84.1 4.8 5.9e-24 84.1 3.3 2.1 2 0 0 2 2 2 1 FtsX-like permease family MacB_PCD PF12704.2 gi|557694819|ref|YP_008797873.1| - 1.6e-22 80.2 0.3 1.6e-22 80.2 0.2 2.7 4 0 0 4 4 4 1 MacB-like periplasmic core domain CARDB PF07705.6 gi|557694820|ref|YP_008797874.1| - 3.9e-09 36.4 1.9 0.001 19.1 0.0 3.4 3 1 0 3 3 3 2 CARDB NPCBM_assoc PF10633.4 gi|557694820|ref|YP_008797874.1| - 1.6e-07 31.2 3.1 0.0064 16.5 0.1 5.0 4 2 0 4 4 4 2 NPCBM-associated, NEW3 domain of alpha-galactosidase TRAP_beta PF05753.9 gi|557694820|ref|YP_008797874.1| - 0.0007 18.7 2.4 1.5 7.9 0.1 3.4 3 1 0 3 3 3 2 Translocon-associated protein beta (TRAPB) DUF11 PF01345.13 gi|557694820|ref|YP_008797874.1| - 0.02 14.9 5.1 1.4 8.9 0.1 3.5 3 0 0 3 3 3 0 Domain of unknown function DUF11 Transglut_C PF00927.17 gi|557694820|ref|YP_008797874.1| - 0.031 14.3 0.1 5.2 7.1 0.0 3.0 2 1 0 2 2 2 0 Transglutaminase family, C-terminal ig like domain NPCBM_assoc PF10633.4 gi|557694821|ref|YP_008797875.1| - 0.0085 16.1 0.1 0.6 10.1 0.0 2.4 2 0 0 2 2 2 2 NPCBM-associated, NEW3 domain of alpha-galactosidase ABC_tran PF00005.22 gi|557694822|ref|YP_008797876.1| - 4.2e-36 124.2 0.0 6e-36 123.7 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|557694822|ref|YP_008797876.1| - 1.7e-14 54.5 0.1 1.7e-08 34.7 0.0 2.1 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|557694822|ref|YP_008797876.1| - 1.1e-09 37.9 0.7 5.1e-06 25.8 0.1 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_16 PF13191.1 gi|557694822|ref|YP_008797876.1| - 2.4e-06 27.6 0.3 1.1e-05 25.4 0.2 2.0 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.1 gi|557694822|ref|YP_008797876.1| - 7.8e-06 25.3 0.0 1.5e-05 24.4 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_13 PF13166.1 gi|557694822|ref|YP_008797876.1| - 3.8e-05 22.3 0.0 0.0007 18.1 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|557694822|ref|YP_008797876.1| - 4.3e-05 23.6 0.1 0.00036 20.6 0.1 2.1 1 1 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|557694822|ref|YP_008797876.1| - 7e-05 22.0 0.0 0.00012 21.3 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_17 PF13207.1 gi|557694822|ref|YP_008797876.1| - 7.4e-05 23.5 0.2 0.00028 21.6 0.1 2.0 2 1 0 2 2 2 1 AAA domain MMR_HSR1 PF01926.18 gi|557694822|ref|YP_008797876.1| - 8.4e-05 22.5 0.5 0.0079 16.1 0.0 2.4 2 1 0 2 2 2 1 50S ribosome-binding GTPase AAA_33 PF13671.1 gi|557694822|ref|YP_008797876.1| - 0.0002 21.2 0.3 0.0017 18.2 0.2 2.2 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|557694822|ref|YP_008797876.1| - 0.00021 20.4 0.0 0.25 10.3 0.0 2.2 1 1 0 2 2 2 2 AAA ATPase domain AAA_10 PF12846.2 gi|557694822|ref|YP_008797876.1| - 0.0004 19.9 0.3 0.00099 18.6 0.2 1.8 1 1 1 2 2 2 1 AAA-like domain AAA_25 PF13481.1 gi|557694822|ref|YP_008797876.1| - 0.00063 19.2 0.0 0.017 14.4 0.0 2.3 2 0 0 2 2 2 1 AAA domain SbcCD_C PF13558.1 gi|557694822|ref|YP_008797876.1| - 0.00065 19.5 0.0 0.0086 15.9 0.0 2.2 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_23 PF13476.1 gi|557694822|ref|YP_008797876.1| - 0.0014 19.0 0.0 0.0031 17.8 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|557694822|ref|YP_008797876.1| - 0.0015 18.8 0.5 0.015 15.6 0.4 2.3 1 1 0 1 1 1 1 AAA domain MobB PF03205.9 gi|557694822|ref|YP_008797876.1| - 0.0017 18.0 0.1 0.011 15.3 0.0 2.1 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B NACHT PF05729.7 gi|557694822|ref|YP_008797876.1| - 0.0027 17.3 0.7 0.052 13.2 0.1 2.4 1 1 1 2 2 2 1 NACHT domain IstB_IS21 PF01695.12 gi|557694822|ref|YP_008797876.1| - 0.0028 17.1 0.1 0.097 12.0 0.0 2.2 2 0 0 2 2 2 1 IstB-like ATP binding protein NTPase_1 PF03266.10 gi|557694822|ref|YP_008797876.1| - 0.0046 16.6 0.2 2.7 7.6 0.0 2.4 2 1 0 2 2 2 1 NTPase AAA_30 PF13604.1 gi|557694822|ref|YP_008797876.1| - 0.006 16.1 0.1 0.09 12.3 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_28 PF13521.1 gi|557694822|ref|YP_008797876.1| - 0.0062 16.5 0.5 0.032 14.2 0.0 2.4 4 0 0 4 4 2 1 AAA domain AAA_19 PF13245.1 gi|557694822|ref|YP_008797876.1| - 0.01 15.5 0.6 0.37 10.5 0.0 2.5 3 0 0 3 3 2 0 Part of AAA domain T2SE PF00437.15 gi|557694822|ref|YP_008797876.1| - 0.01 14.7 0.6 0.035 13.0 0.0 2.0 1 1 0 2 2 2 0 Type II/IV secretion system protein NB-ARC PF00931.17 gi|557694822|ref|YP_008797876.1| - 0.016 14.0 0.4 0.36 9.6 0.0 2.1 2 0 0 2 2 2 0 NB-ARC domain cobW PF02492.14 gi|557694822|ref|YP_008797876.1| - 0.018 14.5 1.0 0.062 12.7 0.0 1.9 1 1 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain AAA_24 PF13479.1 gi|557694822|ref|YP_008797876.1| - 0.019 14.5 0.1 0.17 11.4 0.0 2.1 2 0 0 2 2 2 0 AAA domain HK PF02110.10 gi|557694822|ref|YP_008797876.1| - 0.022 13.9 0.3 0.058 12.5 0.1 1.7 2 0 0 2 2 2 0 Hydroxyethylthiazole kinase family MutS_V PF00488.16 gi|557694822|ref|YP_008797876.1| - 0.024 14.0 0.2 0.81 9.0 0.0 2.2 2 0 0 2 2 2 0 MutS domain V FtsK_SpoIIIE PF01580.13 gi|557694822|ref|YP_008797876.1| - 0.026 14.0 0.0 0.051 13.0 0.0 1.5 1 0 0 1 1 1 0 FtsK/SpoIIIE family AAA_14 PF13173.1 gi|557694822|ref|YP_008797876.1| - 0.029 14.2 0.0 0.059 13.2 0.0 1.6 1 0 0 1 1 1 0 AAA domain ArgK PF03308.11 gi|557694822|ref|YP_008797876.1| - 0.03 13.1 0.3 0.084 11.6 0.0 1.8 2 0 0 2 2 2 0 ArgK protein ABC_ATPase PF09818.4 gi|557694822|ref|YP_008797876.1| - 0.043 12.4 0.3 0.62 8.5 0.0 2.6 3 0 0 3 3 3 0 Predicted ATPase of the ABC class Dynamin_N PF00350.18 gi|557694822|ref|YP_008797876.1| - 0.054 13.2 0.3 0.23 11.2 0.0 2.0 2 1 0 2 2 2 0 Dynamin family Zeta_toxin PF06414.7 gi|557694822|ref|YP_008797876.1| - 0.074 12.1 0.1 0.35 9.9 0.0 1.9 2 0 0 2 2 2 0 Zeta toxin ATP-synt_ab PF00006.20 gi|557694822|ref|YP_008797876.1| - 0.074 12.5 0.0 0.17 11.3 0.0 1.6 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain Miro PF08477.8 gi|557694822|ref|YP_008797876.1| - 0.098 13.1 0.2 0.35 11.3 0.0 2.1 2 1 0 2 2 2 0 Miro-like protein Adeno_IVa2 PF02456.10 gi|557694822|ref|YP_008797876.1| - 0.11 11.1 0.3 3.8 6.0 0.0 2.2 2 1 0 2 2 2 0 Adenovirus IVa2 protein KaiC PF06745.8 gi|557694822|ref|YP_008797876.1| - 0.11 11.6 1.7 5 6.1 0.1 2.8 2 1 1 3 3 3 0 KaiC G-alpha PF00503.15 gi|557694822|ref|YP_008797876.1| - 0.11 11.1 0.0 0.11 11.1 0.0 1.1 1 0 0 1 1 1 0 G-protein alpha subunit KH_2 PF07650.12 gi|557694822|ref|YP_008797876.1| - 0.13 11.8 1.4 0.27 10.7 0.1 2.2 2 0 0 2 2 2 0 KH domain SHMT PF00464.14 gi|557694823|ref|YP_008797877.1| - 1e-81 274.4 0.0 1.5e-81 273.8 0.0 1.2 1 0 0 1 1 1 1 Serine hydroxymethyltransferase Aminotran_1_2 PF00155.16 gi|557694823|ref|YP_008797877.1| - 1.7e-08 33.7 0.0 4.3e-08 32.4 0.0 1.6 1 1 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.16 gi|557694823|ref|YP_008797877.1| - 2.7e-08 33.3 0.0 4.8e-08 32.4 0.0 1.4 1 1 0 1 1 1 1 Beta-eliminating lyase SelA PF03841.8 gi|557694823|ref|YP_008797877.1| - 1.3e-05 24.1 0.0 2e-05 23.5 0.0 1.2 1 0 0 1 1 1 1 L-seryl-tRNA selenium transferase Aminotran_5 PF00266.14 gi|557694823|ref|YP_008797877.1| - 0.0001 21.1 0.2 0.00035 19.4 0.1 1.9 1 1 0 1 1 1 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.12 gi|557694823|ref|YP_008797877.1| - 0.01 14.8 0.1 0.014 14.4 0.0 1.4 1 0 0 1 1 1 0 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_3 PF00202.16 gi|557694824|ref|YP_008797878.1| - 4.8e-63 213.0 0.0 6.3e-63 212.6 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-III Aminotran_1_2 PF00155.16 gi|557694824|ref|YP_008797878.1| - 0.022 13.7 0.0 0.2 10.5 0.0 2.0 1 1 0 1 1 1 0 Aminotransferase class I and II Beta_elim_lyase PF01212.16 gi|557694824|ref|YP_008797878.1| - 0.058 12.5 0.0 0.11 11.5 0.0 1.5 1 1 0 1 1 1 0 Beta-eliminating lyase NUDIX PF00293.23 gi|557694825|ref|YP_008797879.1| - 1.1e-17 63.8 0.1 1.3e-17 63.6 0.1 1.1 1 0 0 1 1 1 1 NUDIX domain UPF0051 PF01458.12 gi|557694826|ref|YP_008797880.1| - 3.3e-60 203.3 0.9 4.2e-60 203.0 0.6 1.1 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) Y_phosphatase3 PF13350.1 gi|557694826|ref|YP_008797880.1| - 0.047 13.9 0.0 0.091 13.0 0.0 1.4 1 0 0 1 1 1 0 Tyrosine phosphatase family ArfGap PF01412.13 gi|557694827|ref|YP_008797881.1| - 0.025 14.3 2.7 0.53 10.0 0.2 2.3 1 1 1 2 2 2 0 Putative GTPase activating protein for Arf DZR PF12773.2 gi|557694827|ref|YP_008797881.1| - 0.056 13.2 6.5 8.2 6.3 4.5 2.8 1 1 0 1 1 1 0 Double zinc ribbon LIM PF00412.17 gi|557694827|ref|YP_008797881.1| - 0.35 10.9 3.9 0.98 9.5 0.1 2.2 1 1 1 2 2 2 0 LIM domain zf-CHY PF05495.7 gi|557694827|ref|YP_008797881.1| - 0.52 10.4 4.4 1.8 8.7 0.2 2.3 1 1 1 2 2 2 0 CHY zinc finger OrfB_Zn_ribbon PF07282.6 gi|557694827|ref|YP_008797881.1| - 1.3 8.7 7.8 1.8 8.2 0.5 2.7 1 1 2 3 3 3 0 Putative transposase DNA-binding domain RNA_POL_M_15KD PF02150.11 gi|557694827|ref|YP_008797881.1| - 1.4 8.6 0.0 1.4 8.6 0.0 3.0 2 1 1 3 3 3 0 RNA polymerases M/15 Kd subunit TF_Zn_Ribbon PF08271.7 gi|557694827|ref|YP_008797881.1| - 1.6 8.1 11.3 1.9 7.8 0.0 3.8 3 1 0 3 3 3 0 TFIIB zinc-binding RRN7 PF11781.3 gi|557694827|ref|YP_008797881.1| - 2.9 7.4 10.4 6.9 6.2 0.1 3.2 3 0 0 3 3 3 0 RNA polymerase I-specific transcription initiation factor Rrn7 Zn-ribbon_8 PF09723.5 gi|557694827|ref|YP_008797881.1| - 3.8 7.5 11.7 38 4.3 3.5 3.5 3 1 0 3 3 3 0 Zinc ribbon domain zf-HYPF PF07503.7 gi|557694827|ref|YP_008797881.1| - 4.7 6.6 7.5 2.3 7.7 0.8 2.6 3 0 0 3 3 3 0 HypF finger DUF4428 PF14471.1 gi|557694827|ref|YP_008797881.1| - 5 6.9 5.4 5.7 6.7 0.1 2.7 2 1 1 3 3 3 0 Domain of unknown function (DUF4428) Prok-RING_1 PF14446.1 gi|557694827|ref|YP_008797881.1| - 5.3 6.8 7.7 30 4.4 0.1 2.7 2 1 0 2 2 2 0 Prokaryotic RING finger family 1 TrmB PF01978.14 gi|557694828|ref|YP_008797882.1| - 0.00013 21.5 1.0 0.0012 18.4 0.1 2.6 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_Crp_2 PF13545.1 gi|557694828|ref|YP_008797882.1| - 0.00039 20.1 0.0 0.014 15.1 0.0 2.5 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain MarR_2 PF12802.2 gi|557694828|ref|YP_008797882.1| - 0.00087 18.9 0.0 0.0062 16.1 0.0 2.2 2 0 0 2 2 2 1 MarR family Crp PF00325.15 gi|557694828|ref|YP_008797882.1| - 0.0035 16.7 0.0 0.014 14.8 0.0 2.0 2 0 0 2 2 2 1 Bacterial regulatory proteins, crp family HTH_5 PF01022.15 gi|557694828|ref|YP_008797882.1| - 0.0057 16.2 0.3 0.68 9.6 0.0 2.9 3 0 0 3 3 3 1 Bacterial regulatory protein, arsR family MarR PF01047.17 gi|557694828|ref|YP_008797882.1| - 0.0072 16.0 0.0 0.022 14.4 0.0 1.8 1 0 0 1 1 1 1 MarR family Penicillinase_R PF03965.11 gi|557694828|ref|YP_008797882.1| - 0.011 15.8 0.2 0.6 10.2 0.0 2.5 2 0 0 2 2 2 0 Penicillinase repressor GLTSCR1 PF15249.1 gi|557694828|ref|YP_008797882.1| - 0.013 15.6 0.4 0.025 14.6 0.3 1.5 1 0 0 1 1 1 0 Glioma tumor suppressor candidate region HTH_36 PF13730.1 gi|557694828|ref|YP_008797882.1| - 0.016 15.3 0.0 0.053 13.6 0.0 1.9 1 1 0 1 1 1 0 Helix-turn-helix domain DUF773 PF05600.7 gi|557694828|ref|YP_008797882.1| - 0.033 12.9 0.2 0.06 12.1 0.1 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF773) Pec_lyase_N PF04431.8 gi|557694828|ref|YP_008797882.1| - 0.037 14.1 0.0 0.13 12.4 0.0 1.9 1 0 0 1 1 1 0 Pectate lyase, N terminus HTH_27 PF13463.1 gi|557694828|ref|YP_008797882.1| - 0.039 14.2 0.0 0.11 12.7 0.0 2.0 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_24 PF13412.1 gi|557694828|ref|YP_008797882.1| - 0.046 13.1 0.1 0.14 11.5 0.0 1.9 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding FlgN PF05130.7 gi|557694828|ref|YP_008797882.1| - 0.063 13.5 1.6 0.12 12.6 0.1 2.1 2 1 0 2 2 2 0 FlgN protein PfUIS3 PF11567.3 gi|557694828|ref|YP_008797882.1| - 0.069 13.3 0.2 0.16 12.1 0.1 1.6 2 0 0 2 2 1 0 Plasmodium falciparum UIS3 membrane protein rve_3 PF13683.1 gi|557694828|ref|YP_008797882.1| - 0.15 11.6 0.1 0.42 10.1 0.1 1.9 1 0 0 1 1 1 0 Integrase core domain Apolipoprotein PF01442.13 gi|557694828|ref|YP_008797882.1| - 1.4 8.4 5.9 4.7 6.6 4.0 2.0 1 1 0 1 1 1 0 Apolipoprotein A1/A4/E domain AAA PF00004.24 gi|557694829|ref|YP_008797883.1| - 3.1e-39 134.2 0.0 3e-37 127.7 0.0 2.5 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) MIT PF04212.13 gi|557694829|ref|YP_008797883.1| - 2.1e-11 43.5 1.8 5.7e-11 42.1 1.2 1.7 1 0 0 1 1 1 1 MIT (microtubule interacting and transport) domain AAA_2 PF07724.9 gi|557694829|ref|YP_008797883.1| - 2e-07 31.1 0.0 5.3e-07 29.6 0.0 1.7 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) AAA_22 PF13401.1 gi|557694829|ref|YP_008797883.1| - 2.2e-07 31.0 0.0 1.4e-05 25.2 0.0 3.1 3 1 0 3 3 2 1 AAA domain AAA_5 PF07728.9 gi|557694829|ref|YP_008797883.1| - 7.5e-07 28.9 0.0 2.4e-06 27.3 0.0 1.9 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_17 PF13207.1 gi|557694829|ref|YP_008797883.1| - 8.5e-06 26.5 0.1 4.3e-05 24.3 0.0 2.2 2 1 0 2 2 2 1 AAA domain AAA_14 PF13173.1 gi|557694829|ref|YP_008797883.1| - 9.8e-06 25.4 0.0 5.1e-05 23.1 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|557694829|ref|YP_008797883.1| - 2.2e-05 24.5 0.2 0.0017 18.3 0.0 2.8 2 1 1 3 3 3 1 AAA ATPase domain AAA_33 PF13671.1 gi|557694829|ref|YP_008797883.1| - 3.2e-05 23.8 0.0 9.3e-05 22.3 0.0 1.8 1 0 0 1 1 1 1 AAA domain AAA_25 PF13481.1 gi|557694829|ref|YP_008797883.1| - 3.8e-05 23.1 0.3 0.0081 15.5 0.1 2.4 1 1 1 2 2 2 1 AAA domain RuvB_N PF05496.7 gi|557694829|ref|YP_008797883.1| - 4e-05 22.7 0.0 7.8e-05 21.8 0.0 1.5 1 0 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus Vps4_C PF09336.5 gi|557694829|ref|YP_008797883.1| - 8.7e-05 22.3 0.2 0.0082 16.0 0.0 2.5 2 0 0 2 2 2 1 Vps4 C terminal oligomerisation domain TIP49 PF06068.8 gi|557694829|ref|YP_008797883.1| - 0.00089 18.0 0.6 0.0035 16.1 0.0 2.1 2 1 1 3 3 3 1 TIP49 C-terminus AAA_10 PF12846.2 gi|557694829|ref|YP_008797883.1| - 0.00093 18.7 0.3 0.52 9.6 0.0 3.0 4 0 0 4 4 3 1 AAA-like domain Arch_ATPase PF01637.13 gi|557694829|ref|YP_008797883.1| - 0.0011 18.7 0.0 0.24 11.0 0.0 3.2 2 1 1 3 3 3 1 Archaeal ATPase RNA_helicase PF00910.17 gi|557694829|ref|YP_008797883.1| - 0.0018 18.4 0.0 0.015 15.4 0.0 2.6 3 1 0 3 3 2 1 RNA helicase AAA_19 PF13245.1 gi|557694829|ref|YP_008797883.1| - 0.0023 17.6 0.0 0.0056 16.4 0.0 1.6 1 0 0 1 1 1 1 Part of AAA domain IstB_IS21 PF01695.12 gi|557694829|ref|YP_008797883.1| - 0.0027 17.1 0.1 0.0061 15.9 0.0 1.5 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_18 PF13238.1 gi|557694829|ref|YP_008797883.1| - 0.0027 18.0 0.0 0.015 15.5 0.0 2.3 2 0 0 2 2 2 1 AAA domain Zeta_toxin PF06414.7 gi|557694829|ref|YP_008797883.1| - 0.0038 16.3 0.0 0.011 14.8 0.0 1.8 2 0 0 2 2 2 1 Zeta toxin ABC_tran PF00005.22 gi|557694829|ref|YP_008797883.1| - 0.0043 17.3 0.0 0.14 12.4 0.0 2.3 2 0 0 2 2 2 1 ABC transporter ATP-synt_ab PF00006.20 gi|557694829|ref|YP_008797883.1| - 0.0056 16.1 0.0 0.0093 15.4 0.0 1.3 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain Mg_chelatase PF01078.16 gi|557694829|ref|YP_008797883.1| - 0.0058 15.8 0.0 0.015 14.4 0.0 1.7 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI AAA_28 PF13521.1 gi|557694829|ref|YP_008797883.1| - 0.0096 15.8 0.0 0.031 14.2 0.0 2.0 1 1 0 1 1 1 1 AAA domain KaiC PF06745.8 gi|557694829|ref|YP_008797883.1| - 0.0096 15.0 0.0 1.8 7.6 0.0 2.5 1 1 1 2 2 2 1 KaiC KAP_NTPase PF07693.9 gi|557694829|ref|YP_008797883.1| - 0.012 14.6 0.0 0.054 12.4 0.0 1.8 1 1 1 2 2 2 0 KAP family P-loop domain ResIII PF04851.10 gi|557694829|ref|YP_008797883.1| - 0.014 15.1 0.0 0.026 14.3 0.0 1.4 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit PhoH PF02562.11 gi|557694829|ref|YP_008797883.1| - 0.034 13.3 0.1 0.087 12.0 0.0 1.6 2 0 0 2 2 2 0 PhoH-like protein TPR_11 PF13414.1 gi|557694829|ref|YP_008797883.1| - 0.064 12.9 0.0 0.18 11.5 0.0 1.7 1 0 0 1 1 1 0 TPR repeat NACHT PF05729.7 gi|557694829|ref|YP_008797883.1| - 0.07 12.7 0.0 0.16 11.6 0.0 1.7 1 1 0 1 1 1 0 NACHT domain SKI PF01202.17 gi|557694829|ref|YP_008797883.1| - 0.082 12.7 0.0 0.22 11.3 0.0 1.8 1 0 0 1 1 1 0 Shikimate kinase TPR_2 PF07719.12 gi|557694829|ref|YP_008797883.1| - 0.1 12.5 0.5 0.6 10.1 0.1 2.3 2 0 0 2 2 2 0 Tetratricopeptide repeat TPR_8 PF13181.1 gi|557694829|ref|YP_008797883.1| - 0.1 12.4 0.2 0.79 9.6 0.0 2.4 2 0 0 2 2 2 0 Tetratricopeptide repeat SMC_N PF02463.14 gi|557694830|ref|YP_008797884.1| - 8.6e-37 126.5 0.0 1.1e-36 126.2 0.0 1.1 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.1 gi|557694830|ref|YP_008797884.1| - 2.1e-18 67.3 0.9 7.3e-18 65.6 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_21 PF13304.1 gi|557694830|ref|YP_008797884.1| - 7.3e-12 45.8 3.9 6.8e-06 26.2 0.0 2.9 2 1 0 2 2 2 2 AAA domain AAA_15 PF13175.1 gi|557694830|ref|YP_008797884.1| - 3.4e-07 29.6 1.5 0.00017 20.7 0.0 3.0 4 0 0 4 4 4 2 AAA ATPase domain AAA_29 PF13555.1 gi|557694830|ref|YP_008797884.1| - 0.00039 19.8 0.0 0.0015 17.9 0.0 1.9 2 0 0 2 2 2 1 P-loop containing region of AAA domain ABC_tran PF00005.22 gi|557694830|ref|YP_008797884.1| - 0.001 19.4 2.5 0.011 16.0 1.7 3.0 1 1 0 1 1 1 1 ABC transporter AAA_25 PF13481.1 gi|557694830|ref|YP_008797884.1| - 0.01 15.2 0.7 0.042 13.2 0.0 2.3 3 1 0 3 3 3 0 AAA domain DUF258 PF03193.11 gi|557694830|ref|YP_008797884.1| - 0.075 12.2 0.0 0.22 10.7 0.0 1.8 1 0 0 1 1 1 0 Protein of unknown function, DUF258 DUF310 PF03750.8 gi|557694830|ref|YP_008797884.1| - 0.11 12.6 2.6 0.45 10.7 0.0 2.8 3 0 0 3 3 3 0 Protein of unknown function (DUF310) AAA_13 PF13166.1 gi|557694830|ref|YP_008797884.1| - 0.15 10.5 12.3 1.7 7.0 0.0 2.7 2 1 0 2 2 2 0 AAA domain ApoLp-III PF07464.6 gi|557694830|ref|YP_008797884.1| - 0.18 11.8 0.2 0.18 11.8 0.1 2.7 3 0 0 3 3 3 0 Apolipophorin-III precursor (apoLp-III) Spc7 PF08317.6 gi|557694830|ref|YP_008797884.1| - 0.45 9.1 11.0 0.63 8.6 2.9 2.4 2 1 0 2 2 2 0 Spc7 kinetochore protein DUF4618 PF15397.1 gi|557694830|ref|YP_008797884.1| - 1.3 8.2 10.9 0.66 9.2 2.0 3.3 2 1 1 3 3 3 0 Domain of unknown function (DUF4618) V_ATPase_I PF01496.14 gi|557694830|ref|YP_008797884.1| - 4.3 5.0 10.5 3 5.5 0.1 2.1 1 1 1 2 2 2 0 V-type ATPase 116kDa subunit family AAA_17 PF13207.1 gi|557694830|ref|YP_008797884.1| - 4.6 8.0 9.7 2.5e+02 2.4 4.9 3.0 2 1 0 2 2 1 0 AAA domain AAA_10 PF12846.2 gi|557694830|ref|YP_008797884.1| - 5.9 6.2 6.5 15 4.9 3.0 2.6 1 1 1 2 2 2 0 AAA-like domain DMPK_coil PF08826.5 gi|557694830|ref|YP_008797884.1| - 9.9 6.1 23.6 3.1 7.7 0.4 3.9 4 0 0 4 4 4 0 DMPK coiled coil domain like CHAD PF05235.9 gi|557694831|ref|YP_008797885.1| - 0.044 13.3 2.5 1.2 8.6 0.4 2.1 1 1 1 2 2 2 0 CHAD domain SMC_Nse1 PF07574.8 gi|557694832|ref|YP_008797886.1| - 0.00041 20.0 0.0 0.28 10.7 0.0 2.2 1 1 1 2 2 2 2 Nse1 non-SMC component of SMC5-6 complex DUF1018 PF06252.7 gi|557694832|ref|YP_008797886.1| - 0.054 14.0 0.2 0.15 12.5 0.1 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF1018) DEAD PF00270.24 gi|557694833|ref|YP_008797887.1| - 1.9e-30 105.5 0.0 1.1e-29 103.1 0.0 2.1 2 0 0 2 2 2 1 DEAD/DEAH box helicase DEAD_assoc PF08494.6 gi|557694833|ref|YP_008797887.1| - 2.2e-29 102.5 8.2 5.1e-29 101.3 0.2 4.0 4 0 0 4 4 4 1 DEAD/H associated Helicase_C PF00271.26 gi|557694833|ref|YP_008797887.1| - 7.5e-12 44.9 0.1 2.9e-11 43.0 0.0 2.0 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|557694833|ref|YP_008797887.1| - 2.9e-07 30.5 0.0 1e-06 28.7 0.0 1.9 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit SNF2_N PF00176.18 gi|557694833|ref|YP_008797887.1| - 6.4e-06 25.1 0.0 1.5e-05 23.9 0.0 1.5 1 0 0 1 1 1 1 SNF2 family N-terminal domain DUF3936 PF13072.1 gi|557694833|ref|YP_008797887.1| - 0.05 13.0 0.1 0.12 11.8 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3936) UvrD-helicase PF00580.16 gi|557694833|ref|YP_008797887.1| - 0.12 11.7 0.0 0.29 10.4 0.0 1.6 1 0 0 1 1 1 0 UvrD/REP helicase N-terminal domain zf-ribbon_3 PF13248.1 gi|557694834|ref|YP_008797888.1| - 3.7e-06 25.9 1.0 5.6e-06 25.3 0.7 1.3 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.2 gi|557694834|ref|YP_008797888.1| - 0.00016 21.3 0.3 0.00027 20.6 0.2 1.3 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|557694834|ref|YP_008797888.1| - 0.00068 19.0 0.9 0.0011 18.3 0.7 1.4 1 0 0 1 1 1 1 zinc-ribbon domain Grp1_Fun34_YaaH PF01184.14 gi|557694834|ref|YP_008797888.1| - 0.0041 16.4 1.8 0.0041 16.4 1.3 1.4 2 0 0 2 2 2 1 GPR1/FUN34/yaaH family UPF0547 PF10571.4 gi|557694834|ref|YP_008797888.1| - 0.0078 15.8 3.4 0.013 15.1 2.3 1.3 1 0 0 1 1 1 1 Uncharacterised protein family UPF0547 NOB1_Zn_bind PF08772.6 gi|557694834|ref|YP_008797888.1| - 0.013 15.3 0.6 0.021 14.6 0.4 1.2 1 0 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like zf-DHHC PF01529.15 gi|557694834|ref|YP_008797888.1| - 0.021 14.2 0.5 0.021 14.2 0.4 1.6 1 1 0 2 2 2 0 DHHC palmitoyltransferase zf-C4H2 PF10146.4 gi|557694834|ref|YP_008797888.1| - 0.037 14.0 0.0 0.037 14.0 0.0 1.2 1 0 0 1 1 1 0 Zinc finger-containing protein DNA_ligase_ZBD PF03119.11 gi|557694834|ref|YP_008797888.1| - 0.039 13.6 0.1 0.078 12.6 0.1 1.5 1 0 0 1 1 1 0 NAD-dependent DNA ligase C4 zinc finger domain Cript PF10235.4 gi|557694834|ref|YP_008797888.1| - 0.1 12.9 0.1 0.16 12.2 0.0 1.4 1 0 0 1 1 1 0 Microtubule-associated protein CRIPT zf-IS66 PF13005.2 gi|557694834|ref|YP_008797888.1| - 0.11 12.4 0.2 0.25 11.3 0.1 1.6 1 0 0 1 1 1 0 zinc-finger binding domain of transposase IS66 DUF4131 PF13567.1 gi|557694834|ref|YP_008797888.1| - 0.16 11.3 3.9 0.8 9.0 2.7 1.9 1 1 0 1 1 1 0 Domain of unknown function (DUF4131) DUF456 PF04306.8 gi|557694834|ref|YP_008797888.1| - 0.98 9.4 8.9 0.062 13.3 2.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF456) DUF533 PF04391.7 gi|557694834|ref|YP_008797888.1| - 3.2 7.0 5.1 11 5.2 2.0 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF533) DUF3995 PF13160.1 gi|557694834|ref|YP_008797888.1| - 4.7 7.2 8.8 1.6 8.7 3.6 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF3995) Acyl-CoA_dh_1 PF00441.19 gi|557694835|ref|YP_008797889.1| - 9.6e-44 149.1 3.9 1.3e-43 148.6 2.7 1.2 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.11 gi|557694835|ref|YP_008797889.1| - 8e-32 110.1 0.0 1.8e-31 109.0 0.0 1.6 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_M PF02770.14 gi|557694835|ref|YP_008797889.1| - 8.1e-20 70.0 0.4 1.5e-19 69.2 0.3 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.6 gi|557694835|ref|YP_008797889.1| - 6.2e-16 58.8 1.5 9.3e-16 58.2 1.0 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Clc-like PF07062.7 gi|557694836|ref|YP_008797890.1| - 0.19 10.9 2.3 0.25 10.5 1.6 1.2 1 0 0 1 1 1 0 Clc-like PMT_2 PF13231.1 gi|557694836|ref|YP_008797890.1| - 0.35 10.7 6.7 1.4 8.8 4.0 2.1 2 1 0 2 2 2 0 Dolichyl-phosphate-mannose-protein mannosyltransferase Cytochrom_B_N PF00033.14 gi|557694836|ref|YP_008797890.1| - 1 8.6 12.5 0.16 11.3 1.3 2.1 1 1 1 2 2 2 0 Cytochrome b(N-terminal)/b6/petB COX15-CtaA PF02628.10 gi|557694836|ref|YP_008797890.1| - 4.4 6.0 16.2 3.8 6.3 0.1 2.4 1 1 1 2 2 2 0 Cytochrome oxidase assembly protein Cpn60_TCP1 PF00118.19 gi|557694837|ref|YP_008797891.1| - 2.6e-161 537.5 12.6 3e-161 537.3 8.7 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family CBFD_NFYB_HMF PF00808.18 gi|557694838|ref|YP_008797892.1| - 8.6e-16 57.7 0.9 1e-15 57.5 0.7 1.1 1 0 0 1 1 1 1 Histone-like transcription factor (CBF/NF-Y) and archaeal histone Histone PF00125.19 gi|557694838|ref|YP_008797892.1| - 6.7e-11 42.1 0.2 7.5e-11 42.0 0.2 1.0 1 0 0 1 1 1 1 Core histone H2A/H2B/H3/H4 Ribosomal_L12 PF00542.14 gi|557694838|ref|YP_008797892.1| - 0.044 13.7 1.6 0.28 11.2 0.1 2.2 1 1 1 2 2 2 0 Ribosomal protein L7/L12 C-terminal domain TAF PF02969.12 gi|557694838|ref|YP_008797892.1| - 0.051 13.5 0.5 0.062 13.2 0.4 1.2 1 0 0 1 1 1 0 TATA box binding protein associated factor (TAF) TFIID-31kDa PF02291.10 gi|557694838|ref|YP_008797892.1| - 0.069 12.9 0.0 0.07 12.9 0.0 1.0 1 0 0 1 1 1 0 Transcription initiation factor IID, 31kD subunit CENP-S PF15630.1 gi|557694838|ref|YP_008797892.1| - 0.075 13.2 0.1 0.087 13.0 0.0 1.2 1 0 0 1 1 1 0 Kinetochore component CENP-S zf-ribbon_3 PF13248.1 gi|557694839|ref|YP_008797893.1| - 0.00034 19.7 0.5 0.00059 18.9 0.4 1.3 1 0 0 1 1 1 1 zinc-ribbon domain GvpG PF05120.7 gi|557694839|ref|YP_008797893.1| - 0.011 15.4 6.7 1.5 8.6 0.1 3.0 2 1 0 2 2 2 0 Gas vesicle protein G DZR PF12773.2 gi|557694839|ref|YP_008797893.1| - 0.02 14.6 0.4 0.038 13.8 0.3 1.4 1 0 0 1 1 1 0 Double zinc ribbon Baculo_PEP_C PF04513.7 gi|557694839|ref|YP_008797893.1| - 0.022 14.5 0.1 3.2 7.5 0.1 2.2 2 0 0 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus HR1 PF02185.11 gi|557694839|ref|YP_008797893.1| - 0.064 13.0 0.3 0.064 13.0 0.2 4.1 4 1 1 5 5 5 0 Hr1 repeat zf-Dof PF02701.10 gi|557694839|ref|YP_008797893.1| - 0.066 13.1 0.2 0.11 12.4 0.2 1.3 1 0 0 1 1 1 0 Dof domain, zinc finger LXG PF04740.7 gi|557694839|ref|YP_008797893.1| - 0.12 12.1 5.6 2.4 7.8 0.1 2.3 2 0 0 2 2 2 0 LXG domain of WXG superfamily DUF1664 PF07889.7 gi|557694839|ref|YP_008797893.1| - 0.27 11.0 5.3 0.53 10.0 1.1 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF1664) Spc7 PF08317.6 gi|557694839|ref|YP_008797893.1| - 0.69 8.5 13.6 0.096 11.3 4.9 2.0 1 1 1 2 2 2 0 Spc7 kinetochore protein DUF342 PF03961.8 gi|557694839|ref|YP_008797893.1| - 0.79 8.0 11.7 1.6 7.0 0.3 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF342) zinc_ribbon_2 PF13240.1 gi|557694839|ref|YP_008797893.1| - 0.89 9.1 8.1 6 6.4 5.6 2.1 1 1 0 1 1 1 0 zinc-ribbon domain Syntaxin-6_N PF09177.6 gi|557694839|ref|YP_008797893.1| - 1 9.8 6.9 0.82 10.1 0.4 2.8 2 1 1 3 3 3 0 Syntaxin 6, N-terminal DUF1003 PF06210.6 gi|557694839|ref|YP_008797893.1| - 1.1 9.2 4.3 0.88 9.5 0.4 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF1003) DUF2387 PF09526.5 gi|557694839|ref|YP_008797893.1| - 1.3 8.9 3.4 16 5.5 2.4 2.6 1 1 0 1 1 1 0 Probable metal-binding protein (DUF2387) CCDC-167 PF15188.1 gi|557694839|ref|YP_008797893.1| - 2.3 8.2 13.5 0.14 12.1 1.0 3.1 2 2 1 3 3 3 0 Coiled-coil domain-containing protein 167 SHOCT PF09851.4 gi|557694839|ref|YP_008797893.1| - 2.3 7.8 15.2 1.4 8.5 4.3 3.6 3 0 0 3 3 3 0 Short C-terminal domain Prefoldin PF02996.12 gi|557694839|ref|YP_008797893.1| - 2.3 7.8 10.4 12 5.6 1.3 3.5 3 1 0 3 3 3 0 Prefoldin subunit Spectrin PF00435.16 gi|557694839|ref|YP_008797893.1| - 5.2 7.4 14.6 7.7 6.8 2.6 3.4 3 1 0 3 3 3 0 Spectrin repeat Prefoldin_2 PF01920.15 gi|557694839|ref|YP_008797893.1| - 5.5 6.7 19.9 0.58 9.9 0.3 3.9 3 1 1 4 4 4 0 Prefoldin subunit DUF16 PF01519.11 gi|557694839|ref|YP_008797893.1| - 8.8 6.6 13.8 1.8e+02 2.4 9.5 2.6 1 1 0 1 1 1 0 Protein of unknown function DUF16 DUF947 PF06102.7 gi|557694839|ref|YP_008797893.1| - 8.9 6.0 14.8 0.19 11.5 1.1 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF947) AAA_18 PF13238.1 gi|557694840|ref|YP_008797894.1| - 1e-13 51.7 0.0 1.5e-13 51.1 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|557694840|ref|YP_008797894.1| - 1.4e-07 32.3 0.0 2e-07 31.8 0.0 1.4 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|557694840|ref|YP_008797894.1| - 2.4e-07 30.7 0.0 6.5e-07 29.3 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_24 PF13479.1 gi|557694840|ref|YP_008797894.1| - 2.8e-05 23.7 0.1 4.1e-05 23.2 0.0 1.2 1 0 0 1 1 1 1 AAA domain KTI12 PF08433.5 gi|557694840|ref|YP_008797894.1| - 6e-05 22.3 0.1 6.7e-05 22.2 0.0 1.1 1 0 0 1 1 1 1 Chromatin associated protein KTI12 NTPase_1 PF03266.10 gi|557694840|ref|YP_008797894.1| - 0.0012 18.6 0.3 0.0025 17.5 0.1 1.7 2 0 0 2 2 2 1 NTPase AAA_19 PF13245.1 gi|557694840|ref|YP_008797894.1| - 0.0017 18.0 1.3 0.0036 17.0 0.3 1.9 2 0 0 2 2 1 1 Part of AAA domain SKI PF01202.17 gi|557694840|ref|YP_008797894.1| - 0.0046 16.8 0.2 0.0098 15.7 0.1 1.7 1 1 0 1 1 1 1 Shikimate kinase AAA PF00004.24 gi|557694840|ref|YP_008797894.1| - 0.0053 16.9 0.5 0.019 15.1 0.4 2.0 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Thymidylate_kin PF02223.12 gi|557694840|ref|YP_008797894.1| - 0.0062 15.9 0.0 0.89 8.8 0.0 2.3 2 0 0 2 2 2 1 Thymidylate kinase ADK PF00406.17 gi|557694840|ref|YP_008797894.1| - 0.0067 16.3 0.1 0.4 10.5 0.0 2.3 2 0 0 2 2 2 1 Adenylate kinase Zeta_toxin PF06414.7 gi|557694840|ref|YP_008797894.1| - 0.011 14.7 0.2 0.027 13.5 0.0 1.7 2 0 0 2 2 2 0 Zeta toxin NB-ARC PF00931.17 gi|557694840|ref|YP_008797894.1| - 0.014 14.2 0.1 0.034 12.9 0.0 1.6 2 0 0 2 2 2 0 NB-ARC domain DUF134 PF02001.11 gi|557694840|ref|YP_008797894.1| - 0.014 15.2 0.1 0.14 12.0 0.0 2.3 1 1 1 2 2 2 0 Protein of unknown function DUF134 AAA_22 PF13401.1 gi|557694840|ref|YP_008797894.1| - 0.017 15.2 0.1 0.032 14.3 0.1 1.8 1 1 0 1 1 1 0 AAA domain Viral_helicase1 PF01443.13 gi|557694840|ref|YP_008797894.1| - 0.024 14.1 0.0 0.034 13.6 0.0 1.4 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase AAA_28 PF13521.1 gi|557694840|ref|YP_008797894.1| - 0.041 13.8 0.0 0.074 13.0 0.0 1.6 1 1 0 1 1 1 0 AAA domain cobW PF02492.14 gi|557694840|ref|YP_008797894.1| - 0.051 13.0 0.1 0.11 11.9 0.0 1.6 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain GCD14 PF08704.5 gi|557694841|ref|YP_008797895.1| - 4.5e-36 124.6 0.0 4.2e-35 121.4 0.0 1.9 1 1 1 2 2 2 1 tRNA methyltransferase complex GCD14 subunit Methyltransf_31 PF13847.1 gi|557694841|ref|YP_008797895.1| - 4.4e-08 32.8 0.0 5.6e-08 32.5 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|557694841|ref|YP_008797895.1| - 2.6e-07 31.2 0.0 4.6e-07 30.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|557694841|ref|YP_008797895.1| - 3.3e-06 27.1 0.0 1e-05 25.4 0.0 1.8 1 1 0 1 1 1 1 Methyltransferase domain PCMT PF01135.14 gi|557694841|ref|YP_008797895.1| - 3.7e-05 23.3 0.0 5.2e-05 22.8 0.0 1.3 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) MTS PF05175.9 gi|557694841|ref|YP_008797895.1| - 9.7e-05 21.8 0.0 0.00013 21.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_24 PF13578.1 gi|557694841|ref|YP_008797895.1| - 0.0002 22.1 0.0 0.00038 21.2 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|557694841|ref|YP_008797895.1| - 0.0004 20.8 0.0 0.0016 18.8 0.0 1.9 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_32 PF13679.1 gi|557694841|ref|YP_008797895.1| - 0.0052 16.4 0.0 0.007 16.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.13 gi|557694841|ref|YP_008797895.1| - 0.021 14.4 0.0 0.031 13.8 0.0 1.2 1 0 0 1 1 1 0 Putative RNA methylase family UPF0020 Ubie_methyltran PF01209.13 gi|557694841|ref|YP_008797895.1| - 0.031 13.4 0.0 0.047 12.7 0.0 1.3 1 0 0 1 1 1 0 ubiE/COQ5 methyltransferase family Methyltransf_25 PF13649.1 gi|557694841|ref|YP_008797895.1| - 0.035 14.4 0.0 0.059 13.7 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_23 PF13489.1 gi|557694841|ref|YP_008797895.1| - 0.053 13.2 0.0 1.2 8.8 0.0 2.2 1 1 0 1 1 1 0 Methyltransferase domain VP9 PF09625.5 gi|557694841|ref|YP_008797895.1| - 0.059 13.1 0.0 1.7 8.4 0.0 2.4 2 0 0 2 2 2 0 VP9 protein Peptidase_M10 PF00413.19 gi|557694842|ref|YP_008797896.1| - 1.1e-06 28.4 0.1 5.3e-06 26.2 0.1 2.0 1 1 1 2 2 2 1 Matrixin Reprolysin_4 PF13583.1 gi|557694842|ref|YP_008797896.1| - 0.0009 18.8 0.0 0.0015 18.0 0.0 1.3 1 0 0 1 1 1 1 Metallo-peptidase family M12B Reprolysin-like Reprolysin_2 PF13574.1 gi|557694842|ref|YP_008797896.1| - 0.0082 16.2 0.0 0.017 15.1 0.0 1.5 1 0 0 1 1 1 1 Metallo-peptidase family M12B Reprolysin-like Zn_peptidase_2 PF04298.7 gi|557694842|ref|YP_008797896.1| - 0.018 14.4 0.1 0.036 13.4 0.1 1.4 1 0 0 1 1 1 0 Putative neutral zinc metallopeptidase Reprolysin_3 PF13582.1 gi|557694842|ref|YP_008797896.1| - 0.038 14.5 0.1 0.072 13.6 0.0 1.4 1 0 0 1 1 1 0 Metallo-peptidase family M12B Reprolysin-like Reprolysin_5 PF13688.1 gi|557694842|ref|YP_008797896.1| - 0.041 13.8 0.0 0.069 13.0 0.0 1.3 1 0 0 1 1 1 0 Metallo-peptidase family M12 Chorismate_synt PF01264.16 gi|557694843|ref|YP_008797897.1| - 2.8e-144 479.8 0.0 3.2e-144 479.6 0.0 1.0 1 0 0 1 1 1 1 Chorismate synthase Plug PF07715.10 gi|557694843|ref|YP_008797897.1| - 0.057 13.7 0.5 0.2 12.0 0.0 2.1 3 0 0 3 3 3 0 TonB-dependent Receptor Plug Domain Nfu_N PF08712.6 gi|557694843|ref|YP_008797897.1| - 0.17 11.4 0.0 0.35 10.5 0.0 1.4 1 0 0 1 1 1 0 Scaffold protein Nfu/NifU N terminal Pterin_4a PF01329.14 gi|557694844|ref|YP_008797898.1| - 1.4e-28 98.4 0.0 1.6e-28 98.2 0.0 1.0 1 0 0 1 1 1 1 Pterin 4 alpha carbinolamine dehydratase PhoU PF01895.14 gi|557694845|ref|YP_008797899.1| - 2e-23 82.6 8.6 5e-19 68.5 1.0 2.2 2 0 0 2 2 2 2 PhoU domain Antitoxin-MazE PF04014.13 gi|557694845|ref|YP_008797899.1| - 6e-05 22.6 0.1 0.00013 21.6 0.1 1.6 1 0 0 1 1 1 1 Antidote-toxin recognition MazE DUF2682 PF10909.3 gi|557694845|ref|YP_008797899.1| - 0.003 17.8 0.4 0.0083 16.3 0.3 1.7 1 0 0 1 1 1 1 Protein of unknown function (DUF2682) BLOC1_2 PF10046.4 gi|557694845|ref|YP_008797899.1| - 0.015 15.4 1.3 0.031 14.3 0.1 2.0 2 0 0 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 IGPD PF00475.13 gi|557694845|ref|YP_008797899.1| - 0.058 13.2 0.1 6.3 6.6 0.0 2.3 1 1 1 2 2 2 0 Imidazoleglycerol-phosphate dehydratase DUF86 PF01934.12 gi|557694845|ref|YP_008797899.1| - 0.42 10.2 3.7 46 3.6 0.2 4.4 3 1 1 4 4 4 0 Protein of unknown function DUF86 PBP_like_2 PF12849.2 gi|557694846|ref|YP_008797900.1| - 2.7e-36 125.4 0.1 6e-36 124.3 0.0 1.4 1 1 0 1 1 1 1 PBP superfamily domain PBP_like PF12727.2 gi|557694846|ref|YP_008797900.1| - 5.6e-24 84.1 0.0 5.4e-23 80.9 0.0 2.1 2 0 0 2 2 2 1 PBP superfamily domain BPD_transp_1 PF00528.17 gi|557694847|ref|YP_008797901.1| - 1.2e-19 70.5 19.2 1.2e-19 70.5 13.3 2.2 1 1 1 2 2 2 2 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.17 gi|557694848|ref|YP_008797902.1| - 1.9e-20 73.1 15.3 2.6e-20 72.7 10.6 1.1 1 0 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.22 gi|557694849|ref|YP_008797903.1| - 4.8e-32 111.1 0.0 6.9e-32 110.6 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|557694849|ref|YP_008797903.1| - 6.4e-17 62.4 0.0 1.2e-09 38.5 0.0 2.2 1 1 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|557694849|ref|YP_008797903.1| - 1.3e-10 40.8 0.8 9.5e-05 21.7 0.1 2.7 2 1 1 3 3 3 2 RecF/RecN/SMC N terminal domain AAA_15 PF13175.1 gi|557694849|ref|YP_008797903.1| - 3.2e-08 33.0 0.1 0.0015 17.6 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_22 PF13401.1 gi|557694849|ref|YP_008797903.1| - 8.2e-07 29.2 0.0 2.2e-06 27.8 0.0 1.8 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|557694849|ref|YP_008797903.1| - 1.5e-06 28.3 0.3 1.1e-05 25.5 0.2 2.0 1 1 0 1 1 1 1 AAA ATPase domain AAA_23 PF13476.1 gi|557694849|ref|YP_008797903.1| - 5.4e-06 26.8 0.0 1.5e-05 25.4 0.0 1.7 2 0 0 2 2 2 1 AAA domain DUF258 PF03193.11 gi|557694849|ref|YP_008797903.1| - 4.6e-05 22.6 0.0 0.0001 21.5 0.0 1.6 1 0 0 1 1 1 1 Protein of unknown function, DUF258 Arch_ATPase PF01637.13 gi|557694849|ref|YP_008797903.1| - 4.7e-05 23.2 0.2 9.3e-05 22.2 0.2 1.8 1 1 0 1 1 1 1 Archaeal ATPase AAA_29 PF13555.1 gi|557694849|ref|YP_008797903.1| - 0.00028 20.3 0.0 0.00071 19.0 0.0 1.7 1 0 0 1 1 1 1 P-loop containing region of AAA domain Adeno_IVa2 PF02456.10 gi|557694849|ref|YP_008797903.1| - 0.0024 16.6 0.0 0.014 14.0 0.0 1.9 2 0 0 2 2 2 1 Adenovirus IVa2 protein AAA_10 PF12846.2 gi|557694849|ref|YP_008797903.1| - 0.0026 17.2 0.1 0.0097 15.3 0.0 1.8 1 1 1 2 2 2 1 AAA-like domain AAA_19 PF13245.1 gi|557694849|ref|YP_008797903.1| - 0.003 17.2 0.0 0.11 12.3 0.0 2.3 2 0 0 2 2 2 1 Part of AAA domain AAA_13 PF13166.1 gi|557694849|ref|YP_008797903.1| - 0.0036 15.8 0.1 1.1 7.6 0.1 2.2 2 0 0 2 2 2 2 AAA domain Rad17 PF03215.10 gi|557694849|ref|YP_008797903.1| - 0.0075 15.0 0.0 0.013 14.1 0.0 1.3 1 0 0 1 1 1 1 Rad17 cell cycle checkpoint protein AAA_17 PF13207.1 gi|557694849|ref|YP_008797903.1| - 0.0093 16.7 0.8 0.035 14.9 0.6 2.0 1 1 0 1 1 1 1 AAA domain AAA_14 PF13173.1 gi|557694849|ref|YP_008797903.1| - 0.014 15.2 0.1 0.066 13.1 0.0 2.0 2 0 0 2 2 2 0 AAA domain SbcCD_C PF13558.1 gi|557694849|ref|YP_008797903.1| - 0.032 14.1 0.0 0.43 10.5 0.0 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit YflT PF11181.3 gi|557694849|ref|YP_008797903.1| - 0.032 14.3 0.1 2.8 8.1 0.0 2.2 2 0 0 2 2 2 0 Heat induced stress protein YflT AAA_18 PF13238.1 gi|557694849|ref|YP_008797903.1| - 0.042 14.1 0.0 0.12 12.7 0.0 1.7 2 0 0 2 2 1 0 AAA domain PduV-EutP PF10662.4 gi|557694849|ref|YP_008797903.1| - 0.044 13.2 0.3 0.62 9.5 0.0 2.6 2 1 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation AAA_30 PF13604.1 gi|557694849|ref|YP_008797903.1| - 0.048 13.2 0.1 0.89 9.0 0.0 2.1 2 0 0 2 2 2 0 AAA domain MMR_HSR1 PF01926.18 gi|557694849|ref|YP_008797903.1| - 0.06 13.3 0.3 0.19 11.6 0.2 2.1 1 1 0 1 1 1 0 50S ribosome-binding GTPase NACHT PF05729.7 gi|557694849|ref|YP_008797903.1| - 0.06 13.0 0.0 0.13 11.9 0.0 1.5 1 0 0 1 1 1 0 NACHT domain MutS_V PF00488.16 gi|557694849|ref|YP_008797903.1| - 0.063 12.6 0.0 0.11 11.8 0.0 1.4 1 0 0 1 1 1 0 MutS domain V AAA PF00004.24 gi|557694849|ref|YP_008797903.1| - 0.07 13.3 0.1 0.48 10.6 0.1 2.3 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_25 PF13481.1 gi|557694849|ref|YP_008797903.1| - 0.095 12.0 0.0 0.6 9.4 0.0 2.0 2 0 0 2 2 2 0 AAA domain NB-ARC PF00931.17 gi|557694849|ref|YP_008797903.1| - 0.1 11.4 0.0 0.19 10.5 0.0 1.4 1 0 0 1 1 1 0 NB-ARC domain RNA_helicase PF00910.17 gi|557694849|ref|YP_008797903.1| - 0.11 12.7 0.0 0.27 11.4 0.0 1.7 1 0 0 1 1 1 0 RNA helicase AAA_28 PF13521.1 gi|557694849|ref|YP_008797903.1| - 0.11 12.3 0.0 0.33 10.8 0.0 1.8 2 0 0 2 2 2 0 AAA domain MobB PF03205.9 gi|557694849|ref|YP_008797903.1| - 0.12 12.1 0.1 0.37 10.4 0.0 1.8 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_33 PF13671.1 gi|557694849|ref|YP_008797903.1| - 0.13 12.1 0.0 0.37 10.6 0.0 1.7 2 1 0 2 2 2 0 AAA domain PhoU PF01895.14 gi|557694850|ref|YP_008797904.1| - 3.4e-25 88.2 0.5 2.9e-14 53.2 0.4 2.1 2 0 0 2 2 2 2 PhoU domain Pil1 PF13805.1 gi|557694850|ref|YP_008797904.1| - 0.074 12.1 0.1 0.14 11.2 0.0 1.4 1 1 0 1 1 1 0 Eisosome component PIL1 DUF972 PF06156.8 gi|557694850|ref|YP_008797904.1| - 0.14 12.5 1.0 0.44 10.9 0.4 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF972) Phasin PF05597.6 gi|557694850|ref|YP_008797904.1| - 0.2 11.4 2.5 10 5.9 0.0 2.2 2 0 0 2 2 2 0 Poly(hydroxyalcanoate) granule associated protein (phasin) Prok-JAB PF14464.1 gi|557694851|ref|YP_008797905.1| - 3.3e-10 39.4 0.0 4.5e-10 39.0 0.0 1.2 1 0 0 1 1 1 1 Prokaryotic homologs of the JAB domain RadC PF04002.10 gi|557694851|ref|YP_008797905.1| - 0.011 15.4 0.1 0.021 14.5 0.1 1.5 1 0 0 1 1 1 0 RadC-like JAB domain Toxin-JAB1 PF15659.1 gi|557694851|ref|YP_008797905.1| - 0.078 12.8 0.1 0.095 12.5 0.1 1.2 1 0 0 1 1 1 0 JAB-like toxin 1 TIM PF00121.13 gi|557694852|ref|YP_008797906.1| - 4.3e-34 117.6 0.1 6.9e-32 110.4 0.1 2.0 1 1 0 1 1 1 1 Triosephosphate isomerase ThiG PF05690.9 gi|557694852|ref|YP_008797906.1| - 7e-08 31.8 0.6 7e-08 31.8 0.4 1.6 2 0 0 2 2 2 1 Thiazole biosynthesis protein ThiG NMO PF03060.10 gi|557694852|ref|YP_008797906.1| - 1.4e-06 27.6 0.4 2.5e-06 26.9 0.3 1.3 1 0 0 1 1 1 1 Nitronate monooxygenase His_biosynth PF00977.16 gi|557694852|ref|YP_008797906.1| - 0.00019 20.7 0.3 0.00093 18.5 0.0 2.1 3 0 0 3 3 3 1 Histidine biosynthesis protein FMN_dh PF01070.13 gi|557694852|ref|YP_008797906.1| - 0.00055 18.8 0.2 0.00097 18.0 0.1 1.4 1 0 0 1 1 1 1 FMN-dependent dehydrogenase DUF711 PF05167.7 gi|557694852|ref|YP_008797906.1| - 0.0019 17.0 0.5 0.039 12.6 0.0 2.2 1 1 1 2 2 2 1 Uncharacterised ACR (DUF711) IGPS PF00218.16 gi|557694852|ref|YP_008797906.1| - 0.0039 16.2 0.0 0.0055 15.7 0.0 1.3 1 1 0 1 1 1 1 Indole-3-glycerol phosphate synthase PcrB PF01884.12 gi|557694852|ref|YP_008797906.1| - 0.081 12.1 0.1 0.13 11.4 0.1 1.3 1 1 0 1 1 1 0 PcrB family FlpD PF02662.11 gi|557694852|ref|YP_008797906.1| - 0.14 11.9 0.3 1.1 8.9 0.0 2.3 2 0 0 2 2 2 0 Methyl-viologen-reducing hydrogenase, delta subunit GDC-P PF02347.11 gi|557694853|ref|YP_008797907.1| - 2.1e-113 379.2 0.0 2.5e-113 378.9 0.0 1.0 1 0 0 1 1 1 1 Glycine cleavage system P-protein Aminotran_5 PF00266.14 gi|557694853|ref|YP_008797907.1| - 5.7e-08 31.8 0.0 9.4e-08 31.1 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.15 gi|557694853|ref|YP_008797907.1| - 1.6e-05 23.4 0.0 2.9e-05 22.5 0.0 1.4 2 0 0 2 2 2 1 Cys/Met metabolism PLP-dependent enzyme DNA_pol_A_exo1 PF01612.15 gi|557694853|ref|YP_008797907.1| - 0.034 13.6 0.1 0.3 10.5 0.0 2.2 2 0 0 2 2 2 0 3'-5' exonuclease GDC-P PF02347.11 gi|557694854|ref|YP_008797908.1| - 9.6e-18 64.0 0.0 2.3e-17 62.8 0.0 1.5 2 0 0 2 2 2 1 Glycine cleavage system P-protein Aminotran_5 PF00266.14 gi|557694854|ref|YP_008797908.1| - 9.6e-06 24.5 0.0 1.4e-05 24.0 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.16 gi|557694854|ref|YP_008797908.1| - 5.3e-05 22.5 0.0 7.3e-05 22.0 0.0 1.3 1 1 0 1 1 1 1 Beta-eliminating lyase GCV_T PF01571.16 gi|557694855|ref|YP_008797909.1| - 4.6e-61 205.8 0.0 8.5e-61 204.9 0.0 1.4 2 0 0 2 2 2 1 Aminomethyltransferase folate-binding domain GCV_T_C PF08669.6 gi|557694855|ref|YP_008797909.1| - 3.3e-21 75.0 0.1 6.6e-21 74.1 0.0 1.4 1 0 0 1 1 1 1 Glycine cleavage T-protein C-terminal barrel domain TrmE_N PF10396.4 gi|557694855|ref|YP_008797909.1| - 0.0033 17.3 0.0 0.07 13.1 0.0 2.4 2 0 0 2 2 2 1 GTP-binding protein TrmE N-terminus tRNA_anti-codon PF01336.20 gi|557694857|ref|YP_008797911.1| - 8.9e-07 28.6 1.5 2.2e-06 27.4 1.0 1.7 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain ETF PF01012.16 gi|557694858|ref|YP_008797912.1| - 2.4e-13 50.1 0.0 7.2e-07 29.0 0.0 3.2 2 1 0 2 2 2 2 Electron transfer flavoprotein domain AF0941-like PF14591.1 gi|557694858|ref|YP_008797912.1| - 0.038 14.0 0.1 0.11 12.5 0.1 1.8 1 0 0 1 1 1 0 AF0941-like ETF PF01012.16 gi|557694859|ref|YP_008797913.1| - 1.6e-28 99.4 0.0 2.4e-28 98.8 0.0 1.3 1 0 0 1 1 1 1 Electron transfer flavoprotein domain ETF_alpha PF00766.14 gi|557694859|ref|YP_008797913.1| - 1.8e-20 72.3 2.2 3.8e-20 71.3 0.8 2.0 2 1 0 2 2 2 1 Electron transfer flavoprotein FAD-binding domain DAO PF01266.19 gi|557694860|ref|YP_008797914.1| - 7.2e-20 71.1 0.1 1.5e-19 70.1 0.1 1.5 1 1 0 1 1 1 1 FAD dependent oxidoreductase Trp_halogenase PF04820.9 gi|557694860|ref|YP_008797914.1| - 4.4e-12 45.3 0.1 1.6e-06 27.0 0.0 2.2 2 0 0 2 2 2 2 Tryptophan halogenase FAD_oxidored PF12831.2 gi|557694860|ref|YP_008797914.1| - 4.8e-11 42.3 0.0 8.6e-11 41.5 0.0 1.4 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|557694860|ref|YP_008797914.1| - 1.5e-09 37.2 2.6 2.8e-08 33.0 0.5 2.7 3 0 0 3 3 3 1 FAD binding domain Thi4 PF01946.12 gi|557694860|ref|YP_008797914.1| - 7.5e-09 35.0 1.4 4e-07 29.3 0.3 2.3 2 0 0 2 2 2 1 Thi4 family FAD_binding_3 PF01494.14 gi|557694860|ref|YP_008797914.1| - 1.5e-07 30.8 0.2 6.7e-07 28.6 0.2 1.9 1 1 0 1 1 1 1 FAD binding domain NAD_binding_8 PF13450.1 gi|557694860|ref|YP_008797914.1| - 2.7e-07 30.5 0.8 7.6e-07 29.0 0.5 1.8 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.9 gi|557694860|ref|YP_008797914.1| - 3e-07 29.2 0.5 2.3e-06 26.3 0.2 2.0 2 0 0 2 2 2 1 HI0933-like protein GIDA PF01134.17 gi|557694860|ref|YP_008797914.1| - 6.4e-07 28.5 0.4 2.4e-05 23.3 0.3 2.2 2 0 0 2 2 2 1 Glucose inhibited division protein A Pyr_redox_2 PF07992.9 gi|557694860|ref|YP_008797914.1| - 4.1e-06 26.8 0.3 1.4e-05 25.1 0.2 1.8 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|557694860|ref|YP_008797914.1| - 2.1e-05 24.6 0.7 0.0029 17.6 0.5 2.6 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.7 gi|557694860|ref|YP_008797914.1| - 9.9e-05 21.4 0.3 0.002 17.1 0.2 2.2 2 0 0 2 2 2 1 Lycopene cyclase protein GDI PF00996.13 gi|557694860|ref|YP_008797914.1| - 0.0042 15.4 0.0 2.6 6.2 0.0 2.7 3 0 0 3 3 3 2 GDP dissociation inhibitor ThiF PF00899.16 gi|557694860|ref|YP_008797914.1| - 0.025 14.4 0.0 0.078 12.8 0.0 1.8 1 0 0 1 1 1 0 ThiF family 3HCDH_N PF02737.13 gi|557694860|ref|YP_008797914.1| - 0.051 13.2 0.7 0.096 12.3 0.0 1.8 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_7 PF13241.1 gi|557694860|ref|YP_008797914.1| - 0.077 13.2 0.0 0.17 12.1 0.0 1.6 1 0 0 1 1 1 0 Putative NAD(P)-binding NAD_binding_9 PF13454.1 gi|557694860|ref|YP_008797914.1| - 0.11 12.2 0.5 0.24 11.1 0.1 1.8 2 0 0 2 2 2 0 FAD-NAD(P)-binding Pyr_redox PF00070.22 gi|557694860|ref|YP_008797914.1| - 0.45 10.9 0.1 0.45 10.9 0.1 2.2 2 0 0 2 2 1 0 Pyridine nucleotide-disulphide oxidoreductase Rhodanese PF00581.15 gi|557694861|ref|YP_008797915.1| - 1.1e-43 148.1 0.0 1.6e-24 86.4 0.0 2.1 2 0 0 2 2 2 2 Rhodanese-like domain GCV_H PF01597.14 gi|557694862|ref|YP_008797916.1| - 3.4e-12 46.0 0.0 5.6e-12 45.4 0.0 1.3 1 0 0 1 1 1 1 Glycine cleavage H-protein TusA PF01206.12 gi|557694862|ref|YP_008797916.1| - 1e-06 28.2 0.0 2.5e-06 26.9 0.0 1.6 1 0 0 1 1 1 1 Sulfurtransferase TusA tRNA_int_endo PF01974.12 gi|557694863|ref|YP_008797917.1| - 4.6e-25 87.2 0.0 8.6e-25 86.3 0.0 1.4 1 0 0 1 1 1 1 tRNA intron endonuclease, catalytic C-terminal domain tRNA_int_endo_N PF02778.9 gi|557694863|ref|YP_008797917.1| - 1.9e-18 65.7 0.4 4.3e-18 64.6 0.0 1.7 2 0 0 2 2 2 1 tRNA intron endonuclease, N-terminal domain PhoU_div PF01865.11 gi|557694864|ref|YP_008797918.1| - 2e-19 69.6 12.9 2.8e-19 69.1 8.9 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF47 PhoU PF01895.14 gi|557694864|ref|YP_008797918.1| - 8.1e-07 29.4 12.3 0.00042 20.7 1.7 2.4 2 0 0 2 2 2 2 PhoU domain priB_priC PF07445.7 gi|557694864|ref|YP_008797918.1| - 0.59 9.5 5.7 0.47 9.9 0.1 2.5 2 1 0 2 2 2 0 Primosomal replication protein priB and priC cwf21 PF08312.7 gi|557694864|ref|YP_008797918.1| - 4.4 7.2 8.0 34 4.4 1.2 3.7 2 1 0 2 2 2 0 cwf21 domain NTP_transf_3 PF12804.2 gi|557694865|ref|YP_008797919.1| - 3.2e-28 98.8 0.2 4.1e-28 98.4 0.1 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain S_layer_C PF05124.7 gi|557694866|ref|YP_008797920.1| - 1e-07 31.8 0.0 1.5e-07 31.2 0.0 1.2 1 0 0 1 1 1 1 S-layer like family, C-terminal region MarR_2 PF12802.2 gi|557694866|ref|YP_008797920.1| - 9.4e-06 25.2 0.0 2.6e-05 23.7 0.0 1.7 1 0 0 1 1 1 1 MarR family HTH_29 PF13551.1 gi|557694866|ref|YP_008797920.1| - 0.00097 19.2 0.1 0.0019 18.3 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn helix HTH_24 PF13412.1 gi|557694866|ref|YP_008797920.1| - 0.0056 16.0 0.0 0.073 12.4 0.0 2.3 1 1 1 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.2 gi|557694866|ref|YP_008797920.1| - 0.02 14.7 0.0 0.042 13.6 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain EF-hand_5 PF13202.1 gi|557694866|ref|YP_008797920.1| - 0.12 11.7 1.2 0.26 10.7 0.9 1.5 1 0 0 1 1 1 0 EF hand SIS PF01380.17 gi|557694867|ref|YP_008797921.1| - 7.9e-44 148.4 0.1 3.5e-23 81.6 0.1 2.8 3 0 0 3 3 3 2 SIS domain GATase_6 PF13522.1 gi|557694867|ref|YP_008797921.1| - 1.7e-20 73.3 0.0 3.1e-20 72.4 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_2 PF00310.16 gi|557694867|ref|YP_008797921.1| - 3.9e-18 65.2 1.3 1.4e-13 50.3 0.0 2.9 2 1 1 3 3 3 2 Glutamine amidotransferases class-II GATase_7 PF13537.1 gi|557694867|ref|YP_008797921.1| - 2.3e-16 59.6 0.0 3.7e-16 59.0 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferase domain SIS_2 PF13580.1 gi|557694867|ref|YP_008797921.1| - 2.9e-05 23.8 0.1 0.22 11.2 0.0 3.4 3 1 1 4 4 4 2 SIS domain GATase_4 PF13230.1 gi|557694867|ref|YP_008797921.1| - 0.00035 19.3 0.0 0.00068 18.4 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferases class-II EVE PF01878.13 gi|557694868|ref|YP_008797922.1| - 2.2e-07 31.0 0.0 2.5e-07 30.8 0.0 1.1 1 0 0 1 1 1 1 EVE domain Glu_synthase PF01645.12 gi|557694869|ref|YP_008797923.1| - 1.2e-19 70.4 0.0 3.2e-19 69.1 0.0 1.6 1 1 0 1 1 1 1 Conserved region in glutamate synthase FMN_dh PF01070.13 gi|557694869|ref|YP_008797923.1| - 3.4e-19 68.8 0.8 8.8e-13 47.8 0.3 2.1 2 0 0 2 2 2 2 FMN-dependent dehydrogenase NMO PF03060.10 gi|557694869|ref|YP_008797923.1| - 0.0013 17.9 0.4 0.0019 17.3 0.3 1.2 1 0 0 1 1 1 1 Nitronate monooxygenase tRNA-synt_2 PF00152.15 gi|557694870|ref|YP_008797924.1| - 2.4e-63 213.9 0.0 3.9e-63 213.2 0.0 1.3 1 1 0 1 1 1 1 tRNA synthetases class II (D, K and N) DUF2365 PF10157.4 gi|557694871|ref|YP_008797925.1| - 0.036 13.9 1.0 0.071 13.0 0.7 1.4 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2365) DUF2217 PF10265.4 gi|557694871|ref|YP_008797925.1| - 0.075 11.7 0.4 0.088 11.5 0.3 1.1 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2217) DUF3294 PF07957.6 gi|557694871|ref|YP_008797925.1| - 0.11 12.0 5.2 0.26 10.7 3.6 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF3294) RP-C_C PF11800.3 gi|557694871|ref|YP_008797925.1| - 0.18 11.4 4.6 0.33 10.6 3.2 1.4 1 1 0 1 1 1 0 Replication protein C C-terminal region Gemini_AL2 PF01440.11 gi|557694871|ref|YP_008797925.1| - 2.8 8.0 5.3 0.71 9.9 1.3 1.7 1 1 1 2 2 2 0 Geminivirus AL2 protein DUF308 PF03729.8 gi|557694872|ref|YP_008797926.1| - 0.025 14.5 2.7 0.025 14.5 1.9 3.8 3 1 1 4 4 4 0 Short repeat of unknown function (DUF308) DUF2417 PF10329.4 gi|557694872|ref|YP_008797926.1| - 0.12 11.7 0.1 0.12 11.7 0.1 2.4 2 1 0 2 2 2 0 Region of unknown function (DUF2417) DUF4342 PF14242.1 gi|557694872|ref|YP_008797926.1| - 3.3 7.5 5.1 0.61 9.9 0.2 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4342) T2SE PF00437.15 gi|557694873|ref|YP_008797927.1| - 1.9e-48 164.7 0.0 2.8e-48 164.1 0.0 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_29 PF13555.1 gi|557694873|ref|YP_008797927.1| - 0.0026 17.2 0.3 0.17 11.4 0.1 2.6 2 0 0 2 2 2 1 P-loop containing region of AAA domain PCMT PF01135.14 gi|557694873|ref|YP_008797927.1| - 0.044 13.3 0.0 0.086 12.3 0.0 1.4 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) DUF927 PF06048.6 gi|557694873|ref|YP_008797927.1| - 0.055 12.7 0.1 0.1 11.8 0.1 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF927) AAA_17 PF13207.1 gi|557694873|ref|YP_008797927.1| - 0.087 13.6 0.0 1.1 10.0 0.0 2.4 2 0 0 2 2 2 0 AAA domain KaiC PF06745.8 gi|557694874|ref|YP_008797928.1| - 4.7e-19 68.4 0.0 5.5e-19 68.1 0.0 1.0 1 0 0 1 1 1 1 KaiC MutS_V PF00488.16 gi|557694874|ref|YP_008797928.1| - 1.1e-05 25.0 0.1 0.0034 16.8 0.0 2.1 2 0 0 2 2 2 2 MutS domain V DUF835 PF05763.7 gi|557694874|ref|YP_008797928.1| - 7.3e-05 22.3 0.0 0.00011 21.7 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF835) AAA_25 PF13481.1 gi|557694874|ref|YP_008797928.1| - 0.00019 20.9 0.0 0.00031 20.2 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_14 PF13173.1 gi|557694874|ref|YP_008797928.1| - 0.0015 18.4 0.2 0.046 13.6 0.1 2.3 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|557694874|ref|YP_008797928.1| - 0.0051 16.9 0.0 0.012 15.7 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_35 PF14516.1 gi|557694874|ref|YP_008797928.1| - 0.035 12.7 0.0 0.052 12.1 0.0 1.2 1 0 0 1 1 1 0 AAA-like domain Arch_flagellin PF01917.11 gi|557694876|ref|YP_008797930.1| - 4e-05 23.3 0.1 0.0022 17.6 0.1 2.0 2 0 0 2 2 2 2 Archaebacterial flagellin Wzt_C PF14524.1 gi|557694876|ref|YP_008797930.1| - 0.12 12.0 0.0 0.21 11.2 0.0 1.5 1 0 0 1 1 1 0 Wzt C-terminal domain DUF1192 PF06698.6 gi|557694877|ref|YP_008797931.1| - 0.53 10.1 2.8 0.84 9.4 1.3 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF1192) CENP-Q PF13094.1 gi|557694877|ref|YP_008797931.1| - 0.6 10.1 3.1 1.2 9.1 2.1 1.6 1 1 0 1 1 1 0 CENP-Q, a CENPA-CAD centromere complex subunit Arch_flagellin PF01917.11 gi|557694878|ref|YP_008797932.1| - 2.3e-20 73.0 7.2 5.7e-20 71.7 5.0 1.6 1 1 0 1 1 1 1 Archaebacterial flagellin DUF4098 PF13345.1 gi|557694878|ref|YP_008797932.1| - 0.41 10.6 7.6 5.5 7.0 1.5 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4098) DUF3786 PF12654.2 gi|557694879|ref|YP_008797933.1| - 1.2e-20 73.4 0.0 1.4e-20 73.3 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF3786) Cob_adeno_trans PF01923.13 gi|557694880|ref|YP_008797934.1| - 9.7e-41 139.2 0.0 1.2e-40 139.0 0.0 1.0 1 0 0 1 1 1 1 Cobalamin adenosyltransferase BPD_transp_2 PF02653.11 gi|557694881|ref|YP_008797935.1| - 9.9e-43 146.0 28.1 1.3e-42 145.6 19.5 1.1 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component Coa1 PF08695.5 gi|557694881|ref|YP_008797935.1| - 0.03 13.8 0.1 0.086 12.3 0.0 1.7 1 0 0 1 1 1 0 Cytochrome oxidase complex assembly protein 1 BPD_transp_2 PF02653.11 gi|557694882|ref|YP_008797936.1| - 3.8e-39 134.2 33.6 4.5e-39 134.0 23.3 1.1 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component Peripla_BP_6 PF13458.1 gi|557694883|ref|YP_008797937.1| - 8.5e-33 114.1 1.4 1.2e-32 113.6 1.0 1.1 1 0 0 1 1 1 1 Periplasmic binding protein ANF_receptor PF01094.23 gi|557694883|ref|YP_008797937.1| - 2.2e-20 72.7 0.1 3.6e-20 72.0 0.0 1.3 1 0 0 1 1 1 1 Receptor family ligand binding region Peripla_BP_5 PF13433.1 gi|557694883|ref|YP_008797937.1| - 1.4e-07 30.6 0.1 4.6e-07 28.9 0.0 1.8 1 1 0 1 1 1 1 Periplasmic binding protein domain ABC_tran PF00005.22 gi|557694884|ref|YP_008797938.1| - 1e-25 90.6 0.0 1.3e-25 90.3 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|557694884|ref|YP_008797938.1| - 1.6e-09 38.1 0.1 3.1e-07 30.6 0.1 2.1 1 1 0 1 1 1 1 AAA domain BCA_ABC_TP_C PF12399.3 gi|557694884|ref|YP_008797938.1| - 4.8e-06 26.1 0.0 1e-05 25.0 0.0 1.5 1 0 0 1 1 1 1 Branched-chain amino acid ATP-binding cassette transporter AAA_29 PF13555.1 gi|557694884|ref|YP_008797938.1| - 1.5e-05 24.4 0.1 2.8e-05 23.5 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.1 gi|557694884|ref|YP_008797938.1| - 3.2e-05 23.1 0.0 0.049 12.6 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_23 PF13476.1 gi|557694884|ref|YP_008797938.1| - 0.0017 18.7 0.7 0.0033 17.7 0.5 1.4 1 0 0 1 1 1 1 AAA domain AAA_25 PF13481.1 gi|557694884|ref|YP_008797938.1| - 0.0026 17.2 1.4 0.15 11.4 0.1 2.2 2 0 0 2 2 2 1 AAA domain DUF258 PF03193.11 gi|557694884|ref|YP_008797938.1| - 0.003 16.7 0.1 0.0049 16.0 0.1 1.2 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_22 PF13401.1 gi|557694884|ref|YP_008797938.1| - 0.0032 17.5 0.5 0.022 14.8 0.3 2.0 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|557694884|ref|YP_008797938.1| - 0.0035 16.6 0.7 0.026 13.7 0.1 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_19 PF13245.1 gi|557694884|ref|YP_008797938.1| - 0.0048 16.6 0.1 0.011 15.5 0.1 1.5 1 0 0 1 1 1 1 Part of AAA domain AAA_16 PF13191.1 gi|557694884|ref|YP_008797938.1| - 0.0094 15.9 0.5 0.031 14.2 0.1 1.8 2 0 0 2 2 2 1 AAA ATPase domain AAA_33 PF13671.1 gi|557694884|ref|YP_008797938.1| - 0.018 14.9 0.0 0.036 13.9 0.0 1.6 2 0 0 2 2 2 0 AAA domain AAA_30 PF13604.1 gi|557694884|ref|YP_008797938.1| - 0.022 14.3 0.0 0.042 13.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain T2SE PF00437.15 gi|557694884|ref|YP_008797938.1| - 0.031 13.1 0.2 0.05 12.5 0.1 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_10 PF12846.2 gi|557694884|ref|YP_008797938.1| - 0.033 13.6 0.3 0.31 10.4 0.1 2.0 2 0 0 2 2 2 0 AAA-like domain cobW PF02492.14 gi|557694884|ref|YP_008797938.1| - 0.037 13.4 0.1 0.058 12.8 0.1 1.3 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain SRP54 PF00448.17 gi|557694884|ref|YP_008797938.1| - 0.039 13.3 0.1 0.062 12.7 0.1 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain Mg_chelatase PF01078.16 gi|557694884|ref|YP_008797938.1| - 0.055 12.6 0.0 0.075 12.1 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI MMR_HSR1 PF01926.18 gi|557694884|ref|YP_008797938.1| - 0.056 13.3 0.4 0.092 12.7 0.3 1.7 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA PF00004.24 gi|557694884|ref|YP_008797938.1| - 0.062 13.5 0.1 0.15 12.2 0.0 1.7 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Arch_ATPase PF01637.13 gi|557694884|ref|YP_008797938.1| - 0.088 12.4 0.1 0.16 11.6 0.0 1.4 1 0 0 1 1 1 0 Archaeal ATPase NACHT PF05729.7 gi|557694884|ref|YP_008797938.1| - 0.095 12.3 0.3 0.22 11.1 0.1 1.7 2 0 0 2 2 2 0 NACHT domain MobB PF03205.9 gi|557694884|ref|YP_008797938.1| - 0.11 12.2 0.1 0.24 11.0 0.1 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B ABC_ATPase PF09818.4 gi|557694884|ref|YP_008797938.1| - 0.14 10.6 0.4 0.75 8.3 0.2 1.9 2 0 0 2 2 2 0 Predicted ATPase of the ABC class ABC_tran PF00005.22 gi|557694885|ref|YP_008797939.1| - 1.7e-32 112.5 0.0 3.1e-32 111.7 0.0 1.4 2 0 0 2 2 1 1 ABC transporter AAA_21 PF13304.1 gi|557694885|ref|YP_008797939.1| - 2e-17 64.0 1.3 1.8e-08 34.7 0.0 2.1 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|557694885|ref|YP_008797939.1| - 5.8e-09 35.5 0.5 5.7e-05 22.4 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.1 gi|557694885|ref|YP_008797939.1| - 3.1e-06 27.6 0.2 6.3e-06 26.6 0.1 1.5 2 0 0 2 2 1 1 AAA domain AAA_15 PF13175.1 gi|557694885|ref|YP_008797939.1| - 6e-06 25.5 0.2 0.086 11.8 0.0 2.2 2 1 0 2 2 2 2 AAA ATPase domain AAA_10 PF12846.2 gi|557694885|ref|YP_008797939.1| - 4.2e-05 23.1 1.2 0.00081 18.9 0.5 2.0 1 1 0 2 2 2 1 AAA-like domain AAA_29 PF13555.1 gi|557694885|ref|YP_008797939.1| - 0.00013 21.4 0.1 0.00033 20.1 0.0 1.7 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.1 gi|557694885|ref|YP_008797939.1| - 0.0019 18.3 0.1 0.0041 17.2 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_25 PF13481.1 gi|557694885|ref|YP_008797939.1| - 0.0024 17.3 0.1 0.0085 15.5 0.1 1.8 2 0 0 2 2 2 1 AAA domain AAA_33 PF13671.1 gi|557694885|ref|YP_008797939.1| - 0.0034 17.2 0.3 0.0095 15.8 0.2 1.7 2 0 0 2 2 2 1 AAA domain MutS_V PF00488.16 gi|557694885|ref|YP_008797939.1| - 0.0048 16.3 0.0 0.0088 15.4 0.0 1.4 1 0 0 1 1 1 1 MutS domain V Arch_ATPase PF01637.13 gi|557694885|ref|YP_008797939.1| - 0.0048 16.6 0.5 0.098 12.3 0.1 2.2 2 0 0 2 2 2 1 Archaeal ATPase T2SE PF00437.15 gi|557694885|ref|YP_008797939.1| - 0.0055 15.6 0.2 0.013 14.4 0.0 1.6 2 0 0 2 2 2 1 Type II/IV secretion system protein NACHT PF05729.7 gi|557694885|ref|YP_008797939.1| - 0.014 15.0 0.4 0.029 14.0 0.1 1.6 2 0 0 2 2 1 0 NACHT domain AAA_14 PF13173.1 gi|557694885|ref|YP_008797939.1| - 0.016 15.1 0.6 0.1 12.4 0.3 2.4 1 1 1 2 2 2 0 AAA domain DUF258 PF03193.11 gi|557694885|ref|YP_008797939.1| - 0.018 14.2 0.1 0.034 13.3 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_30 PF13604.1 gi|557694885|ref|YP_008797939.1| - 0.019 14.5 0.1 0.049 13.2 0.0 1.8 2 1 0 2 2 2 0 AAA domain AAA_16 PF13191.1 gi|557694885|ref|YP_008797939.1| - 0.02 14.8 0.1 0.042 13.8 0.1 1.5 1 0 0 1 1 1 0 AAA ATPase domain ABC_ATPase PF09818.4 gi|557694885|ref|YP_008797939.1| - 0.023 13.3 0.2 0.73 8.3 0.1 2.5 2 1 0 2 2 2 0 Predicted ATPase of the ABC class FtsK_SpoIIIE PF01580.13 gi|557694885|ref|YP_008797939.1| - 0.025 14.0 0.1 0.046 13.1 0.0 1.4 1 0 0 1 1 1 0 FtsK/SpoIIIE family Miro PF08477.8 gi|557694885|ref|YP_008797939.1| - 0.028 14.9 0.1 0.072 13.5 0.0 1.7 2 0 0 2 2 1 0 Miro-like protein cobW PF02492.14 gi|557694885|ref|YP_008797939.1| - 0.034 13.6 0.6 0.55 9.6 0.3 2.2 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain SbcCD_C PF13558.1 gi|557694885|ref|YP_008797939.1| - 0.039 13.8 0.0 0.51 10.2 0.0 2.3 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_13 PF13166.1 gi|557694885|ref|YP_008797939.1| - 0.059 11.8 0.0 0.46 8.8 0.0 1.9 2 0 0 2 2 2 0 AAA domain Septin PF00735.13 gi|557694885|ref|YP_008797939.1| - 0.064 12.2 0.1 0.12 11.3 0.0 1.4 1 0 0 1 1 1 0 Septin AAA_19 PF13245.1 gi|557694885|ref|YP_008797939.1| - 0.075 12.7 0.4 1.2 8.9 0.1 2.3 2 0 0 2 2 2 0 Part of AAA domain Dynamin_N PF00350.18 gi|557694885|ref|YP_008797939.1| - 0.1 12.4 0.2 0.14 11.9 0.2 1.5 1 1 0 1 1 1 0 Dynamin family MobB PF03205.9 gi|557694885|ref|YP_008797939.1| - 0.12 12.1 0.2 0.27 10.9 0.2 1.6 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B CUE PF02845.11 gi|557694885|ref|YP_008797939.1| - 0.12 11.8 0.1 0.28 10.7 0.1 1.6 1 0 0 1 1 1 0 CUE domain AAA_17 PF13207.1 gi|557694885|ref|YP_008797939.1| - 0.14 13.0 0.3 0.26 12.1 0.2 1.6 1 1 0 1 1 1 0 AAA domain ATP_bind_1 PF03029.12 gi|557694885|ref|YP_008797939.1| - 0.16 11.4 0.4 0.34 10.4 0.3 1.5 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein HAD_2 PF13419.1 gi|557694886|ref|YP_008797940.1| - 8.3e-18 65.2 0.0 1.1e-17 64.8 0.0 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|557694886|ref|YP_008797940.1| - 4.1e-05 24.1 0.0 0.0041 17.5 0.0 2.2 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|557694886|ref|YP_008797940.1| - 0.0038 16.8 0.0 0.0066 16.1 0.0 1.4 1 0 0 1 1 1 1 HAD-hyrolase-like Gp_dh_N PF00044.19 gi|557694887|ref|YP_008797941.1| - 3.1e-23 82.3 0.7 2.2e-10 40.7 0.1 2.5 2 0 0 2 2 2 2 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Gp_dh_C PF02800.15 gi|557694887|ref|YP_008797941.1| - 9.7e-19 67.3 0.0 1.6e-18 66.6 0.0 1.3 1 0 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain DapB_N PF01113.15 gi|557694887|ref|YP_008797941.1| - 3.3e-11 43.1 0.7 7.3e-11 42.0 0.3 1.8 1 1 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus GFO_IDH_MocA PF01408.17 gi|557694887|ref|YP_008797941.1| - 2.7e-06 27.8 0.1 9.4e-06 26.1 0.0 1.9 2 0 0 2 2 2 1 Oxidoreductase family, NAD-binding Rossmann fold NAD_binding_3 PF03447.11 gi|557694887|ref|YP_008797941.1| - 0.00023 21.5 0.1 0.00075 19.8 0.1 1.9 1 1 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain Semialdhyde_dh PF01118.19 gi|557694887|ref|YP_008797941.1| - 0.00052 20.3 0.0 0.0014 18.9 0.0 1.7 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.14 gi|557694887|ref|YP_008797941.1| - 0.0065 15.6 2.6 0.053 12.6 0.2 2.8 2 1 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Saccharop_dh PF03435.13 gi|557694887|ref|YP_008797941.1| - 0.0086 15.1 0.1 0.013 14.5 0.1 1.2 1 0 0 1 1 1 1 Saccharopine dehydrogenase PGK PF00162.14 gi|557694888|ref|YP_008797942.1| - 1.9e-110 369.0 0.0 2.1e-110 368.8 0.0 1.0 1 0 0 1 1 1 1 Phosphoglycerate kinase GSDH PF07995.6 gi|557694889|ref|YP_008797943.1| - 1.5e-78 264.1 0.0 1.9e-78 263.8 0.0 1.1 1 0 0 1 1 1 1 Glucose / Sorbosone dehydrogenase Laminin_G_1 PF00054.18 gi|557694889|ref|YP_008797943.1| - 0.11 12.4 0.0 0.2 11.6 0.0 1.4 1 0 0 1 1 1 0 Laminin G domain NHL PF01436.16 gi|557694889|ref|YP_008797943.1| - 0.13 12.2 0.1 0.98 9.4 0.0 2.5 3 0 0 3 3 3 0 NHL repeat bZIP_1 PF00170.16 gi|557694890|ref|YP_008797944.1| - 0.0039 17.1 2.0 0.0064 16.4 1.4 1.3 1 0 0 1 1 1 1 bZIP transcription factor Cep57_CLD_2 PF14197.1 gi|557694890|ref|YP_008797944.1| - 0.011 15.6 1.5 0.017 15.0 1.0 1.3 1 0 0 1 1 1 0 Centrosome localisation domain of PPC89 Cast PF10174.4 gi|557694890|ref|YP_008797944.1| - 0.014 13.5 0.1 0.014 13.4 0.1 1.0 1 0 0 1 1 1 0 RIM-binding protein of the cytomatrix active zone Bacillus_HBL PF05791.6 gi|557694890|ref|YP_008797944.1| - 0.019 14.3 0.0 0.024 14.0 0.0 1.1 1 0 0 1 1 1 0 Bacillus haemolytic enterotoxin (HBL) vATP-synt_AC39 PF01992.11 gi|557694890|ref|YP_008797944.1| - 0.023 13.8 0.2 0.025 13.7 0.1 1.0 1 0 0 1 1 1 0 ATP synthase (C/AC39) subunit NAD_binding_4 PF07993.7 gi|557694890|ref|YP_008797944.1| - 0.041 12.8 0.0 0.044 12.6 0.0 1.0 1 0 0 1 1 1 0 Male sterility protein DUF641 PF04859.7 gi|557694890|ref|YP_008797944.1| - 0.051 13.3 0.1 0.064 13.0 0.1 1.1 1 0 0 1 1 1 0 Plant protein of unknown function (DUF641) Seryl_tRNA_N PF02403.17 gi|557694890|ref|YP_008797944.1| - 0.063 13.2 0.1 0.074 13.0 0.1 1.2 1 0 0 1 1 1 0 Seryl-tRNA synthetase N-terminal domain ATG16 PF08614.6 gi|557694890|ref|YP_008797944.1| - 0.074 12.8 0.4 0.097 12.4 0.3 1.1 1 0 0 1 1 1 0 Autophagy protein 16 (ATG16) IncA PF04156.9 gi|557694890|ref|YP_008797944.1| - 0.1 12.1 0.4 0.13 11.8 0.3 1.1 1 0 0 1 1 1 0 IncA protein HrpB7 PF09486.5 gi|557694890|ref|YP_008797944.1| - 0.12 12.3 0.0 0.13 12.2 0.0 1.0 1 0 0 1 1 1 0 Bacterial type III secretion protein (HrpB7) Peptidase_M1 PF01433.15 gi|557694892|ref|YP_008797946.1| - 1.2e-59 202.3 0.1 5.2e-59 200.2 0.1 1.8 1 1 0 1 1 1 1 Peptidase family M1 HEAT_2 PF13646.1 gi|557694892|ref|YP_008797946.1| - 2.5e-27 94.9 3.8 1.6e-11 44.3 0.1 3.8 1 1 1 3 3 3 3 HEAT repeats Peptidase_MA_2 PF13485.1 gi|557694892|ref|YP_008797946.1| - 3.1e-14 53.1 1.4 6.7e-14 52.0 0.9 1.6 1 0 0 1 1 1 1 Peptidase MA superfamily HEAT_PBS PF03130.11 gi|557694892|ref|YP_008797946.1| - 1.8e-12 46.4 2.9 0.00046 20.4 0.2 4.6 5 0 0 5 5 5 2 PBS lyase HEAT-like repeat HEAT PF02985.17 gi|557694892|ref|YP_008797946.1| - 3.9e-06 26.4 0.8 1.5 9.0 0.0 4.8 5 0 0 5 5 5 2 HEAT repeat DUF445 PF04286.7 gi|557694892|ref|YP_008797946.1| - 0.0094 15.5 1.6 0.079 12.4 1.1 2.1 1 1 0 1 1 1 1 Protein of unknown function (DUF445) ERAP1_C PF11838.3 gi|557694892|ref|YP_008797946.1| - 0.025 13.8 0.0 0.11 11.7 0.0 1.9 2 0 0 2 2 2 0 ERAP1-like C-terminal domain HEAT_EZ PF13513.1 gi|557694892|ref|YP_008797946.1| - 0.14 12.6 7.6 1.3 9.5 0.3 4.0 2 1 1 4 4 4 0 HEAT-like repeat DUF4200 PF13863.1 gi|557694892|ref|YP_008797946.1| - 0.16 11.9 5.4 0.34 10.8 3.7 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4200) CBS PF00571.23 gi|557694893|ref|YP_008797947.1| - 9.2e-36 121.3 5.4 3.6e-18 65.0 0.9 2.1 2 0 0 2 2 2 2 CBS domain Succ_DH_flav_C PF02910.15 gi|557694893|ref|YP_008797947.1| - 0.085 12.7 0.6 0.4 10.5 0.0 1.9 2 0 0 2 2 2 0 Fumarate reductase flavoprotein C-term PRC PF05239.11 gi|557694893|ref|YP_008797947.1| - 0.3 10.9 5.4 5 7.0 0.1 2.7 2 1 0 2 2 2 0 PRC-barrel domain Hydrolase_6 PF13344.1 gi|557694894|ref|YP_008797948.1| - 2.1e-26 91.7 0.0 6e-26 90.2 0.0 1.8 2 0 0 2 2 2 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|557694894|ref|YP_008797948.1| - 5.5e-17 61.2 0.0 2.5e-16 59.1 0.0 2.1 2 0 0 2 2 2 1 HAD-hyrolase-like HAD_2 PF13419.1 gi|557694894|ref|YP_008797948.1| - 4.9e-14 52.9 0.0 9.6e-07 29.1 0.0 2.7 3 0 0 3 3 3 2 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|557694894|ref|YP_008797948.1| - 1.3e-12 48.6 0.1 2e-12 47.9 0.0 1.4 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase PGP_phosphatase PF09419.5 gi|557694894|ref|YP_008797948.1| - 0.00011 21.5 0.0 0.0013 18.0 0.0 2.2 2 0 0 2 2 2 1 Mitochondrial PGP phosphatase Myotub-related PF06602.9 gi|557694894|ref|YP_008797948.1| - 0.074 11.8 0.0 0.13 11.0 0.0 1.3 1 0 0 1 1 1 0 Myotubularin-like phosphatase domain AsnC_trans_reg PF01037.16 gi|557694895|ref|YP_008797949.1| - 2.6e-19 68.6 0.0 5.7e-19 67.6 0.0 1.6 1 0 0 1 1 1 1 AsnC family HTH_24 PF13412.1 gi|557694895|ref|YP_008797949.1| - 1.4e-14 53.1 0.9 1.1e-13 50.3 0.2 2.1 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.1 gi|557694895|ref|YP_008797949.1| - 3.2e-13 48.9 0.8 9.9e-13 47.4 0.3 1.9 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain TrmB PF01978.14 gi|557694895|ref|YP_008797949.1| - 3.9e-07 29.6 0.1 7.2e-07 28.8 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.15 gi|557694895|ref|YP_008797949.1| - 1.7e-06 27.5 0.0 3e-06 26.7 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_43 PF09904.4 gi|557694895|ref|YP_008797949.1| - 4e-06 26.5 0.1 6.6e-06 25.8 0.1 1.5 1 1 0 1 1 1 1 Winged helix-turn helix MarR_2 PF12802.2 gi|557694895|ref|YP_008797949.1| - 1.9e-05 24.2 0.0 2.9e-05 23.6 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.2 gi|557694895|ref|YP_008797949.1| - 6.4e-05 22.6 0.0 0.00013 21.6 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain Mga PF05043.8 gi|557694895|ref|YP_008797949.1| - 0.00018 21.7 0.1 0.00034 20.8 0.0 1.4 1 0 0 1 1 1 1 Mga helix-turn-helix domain HTH_IclR PF09339.5 gi|557694895|ref|YP_008797949.1| - 0.00039 19.9 0.0 0.00063 19.2 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_38 PF13936.1 gi|557694895|ref|YP_008797949.1| - 0.0004 19.8 0.2 0.001 18.5 0.0 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_28 PF13518.1 gi|557694895|ref|YP_008797949.1| - 0.00082 19.3 0.0 0.0016 18.3 0.0 1.5 2 0 0 2 2 1 1 Helix-turn-helix domain MarR PF01047.17 gi|557694895|ref|YP_008797949.1| - 0.0009 18.8 0.3 0.0065 16.1 0.0 2.1 2 0 0 2 2 2 1 MarR family HTH_11 PF08279.7 gi|557694895|ref|YP_008797949.1| - 0.0011 18.5 1.6 0.0013 18.3 0.2 1.8 2 0 0 2 2 2 1 HTH domain DUF2250 PF10007.4 gi|557694895|ref|YP_008797949.1| - 0.0015 18.4 0.3 0.0024 17.7 0.2 1.3 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) DUF4423 PF14394.1 gi|557694895|ref|YP_008797949.1| - 0.0063 16.0 0.3 0.013 15.0 0.1 1.6 1 1 1 2 2 2 1 Domain of unknown function (DUF4423) HTH_27 PF13463.1 gi|557694895|ref|YP_008797949.1| - 0.016 15.5 0.1 0.033 14.5 0.1 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_23 PF13384.1 gi|557694895|ref|YP_008797949.1| - 0.016 14.8 0.0 0.027 14.1 0.0 1.3 1 0 0 1 1 1 0 Homeodomain-like domain RHH_1 PF01402.16 gi|557694895|ref|YP_008797949.1| - 0.016 15.0 0.4 0.044 13.7 0.3 1.8 1 0 0 1 1 1 0 Ribbon-helix-helix protein, copG family Rrf2 PF02082.15 gi|557694895|ref|YP_008797949.1| - 0.027 14.5 0.3 0.063 13.4 0.1 1.7 2 0 0 2 2 2 0 Transcriptional regulator HTH_30 PF13556.1 gi|557694895|ref|YP_008797949.1| - 0.063 12.8 0.0 0.096 12.2 0.0 1.3 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain GntR PF00392.16 gi|557694895|ref|YP_008797949.1| - 0.079 12.4 0.1 0.18 11.2 0.1 1.6 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family RuvB_C PF05491.8 gi|557694895|ref|YP_008797949.1| - 0.081 12.5 0.3 0.34 10.5 0.1 1.9 2 0 0 2 2 2 0 Holliday junction DNA helicase ruvB C-terminus DUF1394 PF07159.7 gi|557694895|ref|YP_008797949.1| - 0.083 11.9 0.1 0.12 11.4 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1394) HTH_9 PF08221.6 gi|557694895|ref|YP_008797949.1| - 0.11 12.3 0.1 0.26 11.1 0.1 1.6 1 0 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain COG2 PF06148.6 gi|557694895|ref|YP_008797949.1| - 0.23 11.3 1.4 0.39 10.6 0.7 1.6 1 1 0 1 1 1 0 COG (conserved oligomeric Golgi) complex component, COG2 ACP_syn_III_C PF08541.5 gi|557694896|ref|YP_008797950.1| - 7.6e-14 51.4 0.0 1.7e-13 50.4 0.0 1.6 1 0 0 1 1 1 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal HMG_CoA_synt_C PF08540.5 gi|557694896|ref|YP_008797950.1| - 5e-06 26.1 2.4 0.0011 18.5 0.0 2.5 2 1 1 3 3 3 2 Hydroxymethylglutaryl-coenzyme A synthase C terminal ACP_syn_III PF08545.5 gi|557694896|ref|YP_008797950.1| - 1.6e-05 24.4 0.7 4.3e-05 23.0 0.5 1.7 1 0 0 1 1 1 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Thiolase_N PF00108.18 gi|557694896|ref|YP_008797950.1| - 0.00072 18.6 0.5 0.0011 18.0 0.4 1.2 1 0 0 1 1 1 1 Thiolase, N-terminal domain Thiolase_C PF02803.13 gi|557694896|ref|YP_008797950.1| - 0.0027 17.1 0.1 0.034 13.5 0.0 2.3 2 0 0 2 2 2 1 Thiolase, C-terminal domain Ketoacyl-synt_C PF02801.17 gi|557694896|ref|YP_008797950.1| - 0.057 13.2 0.1 3.7 7.4 0.1 3.0 3 0 0 3 3 3 0 Beta-ketoacyl synthase, C-terminal domain Thiolase_C PF02803.13 gi|557694897|ref|YP_008797951.1| - 1.9e-07 30.5 1.1 4.7e-06 26.0 0.0 2.6 3 0 0 3 3 3 1 Thiolase, C-terminal domain ACP_syn_III PF08545.5 gi|557694897|ref|YP_008797951.1| - 4.9e-05 22.9 7.2 0.00017 21.1 0.2 2.9 3 0 0 3 3 3 2 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Thiolase_N PF00108.18 gi|557694897|ref|YP_008797951.1| - 0.00047 19.2 1.9 0.0021 17.1 0.2 2.3 2 0 0 2 2 2 1 Thiolase, N-terminal domain DUF1877 PF08974.5 gi|557694897|ref|YP_008797951.1| - 0.078 12.6 0.0 0.13 11.8 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1877) ketoacyl-synt PF00109.21 gi|557694897|ref|YP_008797951.1| - 0.086 12.2 4.5 0.11 12.0 2.4 1.7 2 0 0 2 2 2 0 Beta-ketoacyl synthase, N-terminal domain DUF35 PF01796.12 gi|557694898|ref|YP_008797952.1| - 1.1e-16 60.7 0.7 1.6e-16 60.2 0.5 1.2 1 0 0 1 1 1 1 DUF35 OB-fold domain DUF35_N PF12172.3 gi|557694898|ref|YP_008797952.1| - 4.3e-05 23.2 2.6 8.6e-05 22.3 1.8 1.5 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) DZR PF12773.2 gi|557694898|ref|YP_008797952.1| - 0.0027 17.4 0.7 0.0047 16.7 0.5 1.3 1 0 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|557694898|ref|YP_008797952.1| - 0.041 13.0 1.7 0.068 12.3 1.2 1.4 1 0 0 1 1 1 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|557694898|ref|YP_008797952.1| - 0.082 12.2 0.3 1.8 7.9 0.0 2.3 2 0 0 2 2 2 0 TFIIB zinc-binding NOB1_Zn_bind PF08772.6 gi|557694898|ref|YP_008797952.1| - 0.084 12.7 0.4 0.14 12.0 0.3 1.4 1 0 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like DNA_RNApol_7kD PF03604.8 gi|557694898|ref|YP_008797952.1| - 0.31 10.5 6.3 0.95 8.9 4.4 1.9 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit zinc_ribbon_2 PF13240.1 gi|557694898|ref|YP_008797952.1| - 0.45 10.0 5.3 1.4 8.5 3.5 1.9 1 1 1 2 2 2 0 zinc-ribbon domain Nudix_N_2 PF14803.1 gi|557694898|ref|YP_008797952.1| - 2.8 7.7 6.7 5.8 6.6 0.6 2.4 1 1 1 2 2 2 0 Nudix N-terminal YhfH PF14149.1 gi|557694898|ref|YP_008797952.1| - 2.9 7.7 6.2 8.5 6.2 0.3 2.3 1 1 1 2 2 2 0 YhfH-like protein NPV_P10 PF05531.7 gi|557694899|ref|YP_008797953.1| - 0.011 15.9 0.5 0.089 13.0 0.1 2.4 2 0 0 2 2 2 0 Nucleopolyhedrovirus P10 protein STAT_alpha PF01017.15 gi|557694899|ref|YP_008797953.1| - 0.011 15.4 3.3 0.86 9.2 0.2 2.4 2 1 0 2 2 2 0 STAT protein, all-alpha domain Chalcone PF02431.10 gi|557694899|ref|YP_008797953.1| - 0.018 14.4 1.0 0.026 13.8 0.1 1.7 2 0 0 2 2 2 0 Chalcone-flavanone isomerase FlgN PF05130.7 gi|557694899|ref|YP_008797953.1| - 0.024 14.9 11.0 0.018 15.2 5.2 2.2 2 1 0 2 2 2 0 FlgN protein AKNA PF12443.3 gi|557694899|ref|YP_008797953.1| - 0.025 14.6 1.2 0.047 13.7 0.1 2.0 2 0 0 2 2 2 0 AT-hook-containing transcription factor Med9 PF07544.8 gi|557694899|ref|YP_008797953.1| - 0.1 12.3 3.2 0.13 11.9 0.5 2.3 2 0 0 2 2 2 0 RNA polymerase II transcription mediator complex subunit 9 Flu_NS2 PF00601.14 gi|557694899|ref|YP_008797953.1| - 0.19 11.9 1.7 3.2 8.0 0.1 2.8 1 1 2 3 3 3 0 Influenza non-structural protein (NS2) THOC7 PF05615.8 gi|557694899|ref|YP_008797953.1| - 0.2 11.9 5.9 0.23 11.6 2.8 2.0 1 1 0 1 1 1 0 Tho complex subunit 7 Fib_alpha PF08702.5 gi|557694899|ref|YP_008797953.1| - 0.2 11.7 1.4 0.3 11.2 0.2 1.8 2 1 0 2 2 2 0 Fibrinogen alpha/beta chain family Prominin PF05478.6 gi|557694899|ref|YP_008797953.1| - 0.24 8.8 4.6 0.61 7.5 0.1 2.0 1 1 1 2 2 2 0 Prominin DUF770 PF05591.7 gi|557694899|ref|YP_008797953.1| - 0.37 10.3 6.5 0.076 12.5 1.8 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF770) ATP-synt_D PF01813.12 gi|557694899|ref|YP_008797953.1| - 0.45 10.0 10.8 1.5 8.3 4.4 3.0 2 1 1 3 3 3 0 ATP synthase subunit D Spc7 PF08317.6 gi|557694899|ref|YP_008797953.1| - 0.46 9.0 10.5 0.63 8.6 6.6 1.6 1 1 1 2 2 2 0 Spc7 kinetochore protein Cep57_CLD_2 PF14197.1 gi|557694899|ref|YP_008797953.1| - 0.46 10.4 9.6 3.4 7.6 0.4 3.5 3 0 0 3 3 3 0 Centrosome localisation domain of PPC89 DUF342 PF03961.8 gi|557694899|ref|YP_008797953.1| - 0.49 8.7 11.4 0.63 8.3 2.3 2.1 1 1 0 2 2 2 0 Protein of unknown function (DUF342) FlaC_arch PF05377.6 gi|557694899|ref|YP_008797953.1| - 0.6 10.0 4.0 0.37 10.7 0.4 2.6 3 0 0 3 3 1 0 Flagella accessory protein C (FlaC) Syntaxin PF00804.20 gi|557694899|ref|YP_008797953.1| - 0.66 10.1 5.2 0.56 10.3 1.7 2.4 2 1 0 2 2 1 0 Syntaxin PRP1_N PF06424.7 gi|557694899|ref|YP_008797953.1| - 0.91 9.8 4.6 1.8 8.8 0.1 3.0 2 1 1 3 3 3 0 PRP1 splicing factor, N-terminal Ribosomal_L29 PF00831.18 gi|557694899|ref|YP_008797953.1| - 1.3 8.7 10.0 0.081 12.6 1.2 3.1 2 2 0 3 3 3 0 Ribosomal L29 protein DUF3391 PF11871.3 gi|557694899|ref|YP_008797953.1| - 1.9 8.7 6.3 0.69 10.1 0.4 2.5 2 1 0 2 2 2 0 Domain of unknown function (DUF3391) TBPIP PF07106.8 gi|557694899|ref|YP_008797953.1| - 2 7.9 12.9 0.26 10.8 2.3 2.7 1 1 4 5 5 5 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) Atg14 PF10186.4 gi|557694899|ref|YP_008797953.1| - 2.2 7.1 7.4 3.3 6.5 5.2 1.3 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 Hemerythrin PF01814.18 gi|557694899|ref|YP_008797953.1| - 2.5 8.2 5.6 1.6 8.8 1.1 2.2 1 1 1 2 2 2 0 Hemerythrin HHE cation binding domain CENP-Q PF13094.1 gi|557694899|ref|YP_008797953.1| - 4.3 7.3 12.5 16 5.4 7.5 2.6 1 1 0 1 1 1 0 CENP-Q, a CENPA-CAD centromere complex subunit Prefoldin_2 PF01920.15 gi|557694899|ref|YP_008797953.1| - 8.6 6.1 13.2 2.8 7.7 0.6 3.4 3 1 0 3 3 3 0 Prefoldin subunit Cortex-I_coil PF09304.5 gi|557694899|ref|YP_008797953.1| - 9.7 6.2 13.8 0.23 11.5 2.4 2.7 2 1 0 2 2 2 0 Cortexillin I, coiled coil JAB PF01398.16 gi|557694900|ref|YP_008797954.1| - 2.2e-23 82.1 0.0 3.1e-23 81.6 0.0 1.2 1 0 0 1 1 1 1 JAB1/Mov34/MPN/PAD-1 ubiquitin protease Prok-JAB PF14464.1 gi|557694900|ref|YP_008797954.1| - 3.3e-11 42.6 0.0 4.8e-11 42.1 0.0 1.2 1 0 0 1 1 1 1 Prokaryotic homologs of the JAB domain UPF0172 PF03665.8 gi|557694900|ref|YP_008797954.1| - 4.1e-06 26.4 0.1 6.5e-06 25.7 0.0 1.4 1 1 0 1 1 1 1 Uncharacterised protein family (UPF0172) ubiquitin PF00240.18 gi|557694901|ref|YP_008797955.1| - 1.3e-12 46.9 0.0 1.5e-12 46.6 0.0 1.1 1 0 0 1 1 1 1 Ubiquitin family Rad60-SLD PF11976.3 gi|557694901|ref|YP_008797955.1| - 5.7e-08 32.3 0.0 6.3e-08 32.2 0.0 1.1 1 0 0 1 1 1 1 Ubiquitin-2 like Rad60 SUMO-like YukD PF08817.5 gi|557694901|ref|YP_008797955.1| - 2e-05 25.0 0.0 2.7e-05 24.6 0.0 1.2 1 0 0 1 1 1 1 WXG100 protein secretion system (Wss), protein YukD Rad60-SLD_2 PF13881.1 gi|557694901|ref|YP_008797955.1| - 0.12 12.2 0.0 0.31 10.9 0.0 1.7 1 1 0 1 1 1 0 Ubiquitin-2 like Rad60 SUMO-like TUG-UBL1 PF11470.3 gi|557694901|ref|YP_008797955.1| - 0.15 12.0 0.0 0.17 11.7 0.0 1.1 1 0 0 1 1 1 0 GLUT4 regulating protein TUG UQ_con PF00179.21 gi|557694902|ref|YP_008797956.1| - 1.9e-28 98.6 0.0 2.3e-28 98.3 0.0 1.1 1 0 0 1 1 1 1 Ubiquitin-conjugating enzyme Prok-E2_B PF14461.1 gi|557694902|ref|YP_008797956.1| - 0.002 17.9 0.0 0.0056 16.4 0.0 1.7 1 1 0 1 1 1 1 Prokaryotic E2 family B ThiF PF00899.16 gi|557694903|ref|YP_008797957.1| - 6.6e-38 129.6 0.0 1.2e-37 128.7 0.0 1.4 1 0 0 1 1 1 1 ThiF family MoeZ_MoeB PF05237.8 gi|557694903|ref|YP_008797957.1| - 0.00072 19.1 0.0 0.0021 17.6 0.0 1.8 2 0 0 2 2 2 1 MoeZ/MoeB domain ubiquitin PF00240.18 gi|557694903|ref|YP_008797957.1| - 0.047 13.1 0.0 0.33 10.3 0.0 2.3 2 0 0 2 2 2 0 Ubiquitin family 2-Hacid_dh_C PF02826.14 gi|557694903|ref|YP_008797957.1| - 0.082 12.0 0.0 0.39 9.8 0.0 2.0 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain zf-RING_2 PF13639.1 gi|557694904|ref|YP_008797958.1| - 4.2e-10 39.2 7.3 5.1e-10 39.0 5.0 1.1 1 0 0 1 1 1 1 Ring finger domain zf-rbx1 PF12678.2 gi|557694904|ref|YP_008797958.1| - 1.4e-06 28.2 4.9 2.8e-06 27.3 3.4 1.5 1 1 0 1 1 1 1 RING-H2 zinc finger zf-C3HC4_3 PF13920.1 gi|557694904|ref|YP_008797958.1| - 4.5e-06 26.2 6.0 5.7e-06 25.8 4.2 1.2 1 0 0 1 1 1 1 Zinc finger, C3HC4 type (RING finger) Prok-RING_1 PF14446.1 gi|557694904|ref|YP_008797958.1| - 7.8e-06 25.5 5.1 3.7e-05 23.3 1.5 2.0 2 0 0 2 2 2 1 Prokaryotic RING finger family 1 zf-C3HC4_2 PF13923.1 gi|557694904|ref|YP_008797958.1| - 0.00036 20.4 7.7 0.00048 20.0 5.3 1.2 1 0 0 1 1 1 1 Zinc finger, C3HC4 type (RING finger) C1_3 PF07649.7 gi|557694904|ref|YP_008797958.1| - 0.0004 20.3 4.6 0.0004 20.3 3.2 2.0 2 0 0 2 2 2 1 C1-like domain zf-HIT PF04438.11 gi|557694904|ref|YP_008797958.1| - 0.006 16.2 3.1 0.006 16.2 2.2 2.3 2 0 0 2 2 2 1 HIT zinc finger PHF5 PF03660.9 gi|557694904|ref|YP_008797958.1| - 0.007 16.4 0.3 0.007 16.4 0.2 1.4 2 0 0 2 2 1 1 PHF5-like protein DUF4206 PF13901.1 gi|557694904|ref|YP_008797958.1| - 0.0091 15.5 3.3 0.011 15.3 2.3 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4206) zf-RING_4 PF14570.1 gi|557694904|ref|YP_008797958.1| - 0.014 14.9 5.9 0.54 9.8 0.2 2.1 2 0 0 2 2 2 0 RING/Ubox like zinc-binding domain PHD PF00628.24 gi|557694904|ref|YP_008797958.1| - 0.016 14.8 7.4 0.033 13.8 5.1 1.5 1 1 0 1 1 1 0 PHD-finger DZR PF12773.2 gi|557694904|ref|YP_008797958.1| - 0.018 14.8 6.3 0.043 13.6 1.6 2.1 1 1 1 2 2 2 0 Double zinc ribbon zf-Apc11 PF12861.2 gi|557694904|ref|YP_008797958.1| - 0.021 14.6 4.7 0.24 11.2 3.3 2.0 1 1 0 1 1 1 0 Anaphase-promoting complex subunit 11 RING-H2 finger zf-RING_5 PF14634.1 gi|557694904|ref|YP_008797958.1| - 0.077 12.7 7.3 0.22 11.2 4.9 2.0 1 1 0 1 1 1 0 zinc-RING finger domain zf-CCHC PF00098.18 gi|557694904|ref|YP_008797958.1| - 0.11 12.4 0.9 0.11 12.4 0.6 2.3 2 0 0 2 2 2 0 Zinc knuckle FANCL_C PF11793.3 gi|557694904|ref|YP_008797958.1| - 0.13 12.2 7.3 1.5 8.8 5.1 2.1 1 1 0 1 1 1 0 FANCL C-terminal domain zf-RING_3 PF14369.1 gi|557694904|ref|YP_008797958.1| - 0.15 12.0 6.5 13 5.8 0.0 3.0 2 1 0 2 2 2 0 zinc-finger Rad50_zn_hook PF04423.9 gi|557694904|ref|YP_008797958.1| - 0.15 11.5 0.6 0.15 11.5 0.4 2.5 2 1 1 3 3 3 0 Rad50 zinc hook motif OrfB_Zn_ribbon PF07282.6 gi|557694904|ref|YP_008797958.1| - 0.24 11.1 3.2 0.21 11.2 0.4 1.9 2 0 0 2 2 2 0 Putative transposase DNA-binding domain Tnp_zf-ribbon_2 PF13842.1 gi|557694904|ref|YP_008797958.1| - 0.25 11.7 6.2 1.1 9.7 4.3 1.9 1 1 0 1 1 1 0 DDE_Tnp_1-like zinc-ribbon C1_1 PF00130.17 gi|557694904|ref|YP_008797958.1| - 0.27 10.9 6.6 0.21 11.3 3.2 1.8 1 1 1 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) RINGv PF12906.2 gi|557694904|ref|YP_008797958.1| - 0.3 11.1 6.7 0.48 10.5 4.7 1.3 1 0 0 1 1 1 0 RING-variant domain C1_2 PF03107.11 gi|557694904|ref|YP_008797958.1| - 0.38 10.9 6.3 0.1 12.7 1.5 1.9 2 0 0 2 2 2 0 C1 domain zf-C3HC4 PF00097.20 gi|557694904|ref|YP_008797958.1| - 0.47 10.1 8.1 5.2 6.8 0.2 2.2 2 0 0 2 2 2 0 Zinc finger, C3HC4 type (RING finger) Peptidase_C74 PF12387.3 gi|557694904|ref|YP_008797958.1| - 0.47 9.5 2.8 0.56 9.3 1.9 1.2 1 0 0 1 1 1 0 Pestivirus NS2 peptidase zinc_ribbon_2 PF13240.1 gi|557694904|ref|YP_008797958.1| - 0.48 9.9 7.7 1.7 8.2 2.7 2.5 2 1 0 2 2 2 0 zinc-ribbon domain zf-Mss51 PF13824.1 gi|557694904|ref|YP_008797958.1| - 0.61 9.9 7.3 0.21 11.4 2.1 2.2 2 1 0 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 zf-C2HC5 PF06221.8 gi|557694904|ref|YP_008797958.1| - 0.99 9.2 7.6 9.6 6.0 1.5 2.2 1 1 1 2 2 2 0 Putative zinc finger motif, C2HC5-type zf-HC5HC2H PF13771.1 gi|557694904|ref|YP_008797958.1| - 1.1 9.4 5.4 0.68 10.1 2.4 1.6 1 1 1 2 2 2 0 PHD-like zinc-binding domain zf-nanos PF05741.8 gi|557694904|ref|YP_008797958.1| - 1.5 8.8 6.6 5.5 7.0 2.0 2.7 2 1 0 2 2 2 0 Nanos RNA binding domain zf-H2C2_2 PF13465.1 gi|557694904|ref|YP_008797958.1| - 1.5 9.2 9.1 13 6.3 3.0 2.9 2 1 0 2 2 2 0 Zinc-finger double domain zf-ribbon_3 PF13248.1 gi|557694904|ref|YP_008797958.1| - 1.6 8.0 6.9 0.33 10.2 0.3 2.7 3 0 0 3 3 3 0 zinc-ribbon domain DUF983 PF06170.7 gi|557694904|ref|YP_008797958.1| - 1.8 8.6 5.0 15 5.7 0.0 2.8 1 1 2 3 3 3 0 Protein of unknown function (DUF983) HypA PF01155.14 gi|557694904|ref|YP_008797958.1| - 2.3 7.9 5.0 4.8 6.9 3.5 1.6 1 1 0 1 1 1 0 Hydrogenase expression/synthesis hypA family Auto_anti-p27 PF06677.7 gi|557694904|ref|YP_008797958.1| - 2.8 7.7 11.0 6.7 6.5 0.1 3.0 2 1 1 3 3 3 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) UPF0547 PF10571.4 gi|557694904|ref|YP_008797958.1| - 2.8 7.7 9.7 1.6 8.4 0.3 2.8 3 0 0 3 3 3 0 Uncharacterised protein family UPF0547 zf-Di19 PF05605.7 gi|557694904|ref|YP_008797958.1| - 3.9 7.6 8.0 3.5 7.8 0.9 2.7 3 0 0 3 3 3 0 Drought induced 19 protein (Di19), zinc-binding DUF2256 PF10013.4 gi|557694904|ref|YP_008797958.1| - 4.4 7.1 8.1 7.2 6.4 0.2 3.0 2 1 1 3 3 3 0 Uncharacterized protein conserved in bacteria (DUF2256) ADK_lid PF05191.9 gi|557694904|ref|YP_008797958.1| - 4.8 6.9 8.6 2.8 7.6 2.9 2.5 2 1 0 2 2 2 0 Adenylate kinase, active site lid Zn-ribbon_8 PF09723.5 gi|557694904|ref|YP_008797958.1| - 5.6 7.0 8.1 2 8.4 2.6 2.3 1 1 2 3 3 3 0 Zinc ribbon domain zf-MIZ PF02891.15 gi|557694904|ref|YP_008797958.1| - 5.8 6.5 10.6 2.6 7.6 1.0 2.8 2 2 0 2 2 2 0 MIZ/SP-RING zinc finger zf-C4_Topoisom PF01396.14 gi|557694904|ref|YP_008797958.1| - 6.9 6.2 9.0 3.1 7.3 0.2 2.7 2 1 1 3 3 3 0 Topoisomerase DNA binding C4 zinc finger zf-FPG_IleRS PF06827.9 gi|557694904|ref|YP_008797958.1| - 7.2 6.3 9.6 6.9 6.4 1.8 2.9 3 1 0 3 3 2 0 Zinc finger found in FPG and IleRS zf-C2H2_4 PF13894.1 gi|557694904|ref|YP_008797958.1| - 8.7 6.9 8.0 7.5 7.1 0.3 2.9 3 0 0 3 3 3 0 C2H2-type zinc finger Cep57_MT_bd PF06657.8 gi|557694905|ref|YP_008797959.1| - 0.00065 19.5 3.4 0.12 12.3 0.7 2.3 1 1 1 2 2 2 2 Centrosome microtubule-binding domain of Cep57 MCPsignal PF00015.16 gi|557694905|ref|YP_008797959.1| - 0.0015 18.1 0.2 0.002 17.6 0.1 1.1 1 0 0 1 1 1 1 Methyl-accepting chemotaxis protein (MCP) signalling domain Baculo_PEP_C PF04513.7 gi|557694905|ref|YP_008797959.1| - 0.0024 17.7 0.4 0.0036 17.1 0.3 1.2 1 0 0 1 1 1 1 Baculovirus polyhedron envelope protein, PEP, C terminus Prefoldin PF02996.12 gi|557694905|ref|YP_008797959.1| - 0.0037 16.8 2.7 0.39 10.3 0.1 2.1 1 1 1 2 2 2 2 Prefoldin subunit Lebercilin PF15619.1 gi|557694905|ref|YP_008797959.1| - 0.0039 16.6 0.7 0.0041 16.5 0.5 1.2 1 0 0 1 1 1 1 Ciliary protein causing Leber congenital amaurosis disease DUF342 PF03961.8 gi|557694905|ref|YP_008797959.1| - 0.0091 14.4 0.7 0.0096 14.3 0.5 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF342) Cauli_AT PF03233.8 gi|557694905|ref|YP_008797959.1| - 0.0094 15.6 0.3 0.01 15.5 0.2 1.2 1 0 0 1 1 1 1 Aphid transmission protein Tropomyosin_1 PF12718.2 gi|557694905|ref|YP_008797959.1| - 0.011 15.5 3.5 0.011 15.5 2.4 1.1 1 0 0 1 1 1 0 Tropomyosin like NPV_P10 PF05531.7 gi|557694905|ref|YP_008797959.1| - 0.014 15.6 1.5 0.043 14.0 1.0 1.8 1 1 0 1 1 1 0 Nucleopolyhedrovirus P10 protein AAA_27 PF13514.1 gi|557694905|ref|YP_008797959.1| - 0.016 12.9 0.9 0.02 12.6 0.6 1.0 1 0 0 1 1 1 0 AAA domain CesA PF11439.3 gi|557694905|ref|YP_008797959.1| - 0.017 15.0 0.6 0.09 12.7 0.4 2.0 1 1 0 1 1 1 0 Type III secretion system filament chaperone CesA Vps5 PF09325.5 gi|557694905|ref|YP_008797959.1| - 0.022 14.0 0.6 0.029 13.6 0.4 1.2 1 0 0 1 1 1 0 Vps5 C terminal like FlxA PF14282.1 gi|557694905|ref|YP_008797959.1| - 0.033 14.1 0.7 0.042 13.8 0.5 1.3 1 0 0 1 1 1 0 FlxA-like protein Enkurin PF13864.1 gi|557694905|ref|YP_008797959.1| - 0.038 14.2 1.1 0.052 13.7 0.3 1.6 2 0 0 2 2 1 0 Calmodulin-binding SlyX PF04102.7 gi|557694905|ref|YP_008797959.1| - 0.038 14.3 5.3 0.63 10.4 0.5 2.2 1 1 1 2 2 2 0 SlyX DUF972 PF06156.8 gi|557694905|ref|YP_008797959.1| - 0.044 14.1 2.2 1 9.7 0.7 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF972) Hemerythrin PF01814.18 gi|557694905|ref|YP_008797959.1| - 0.058 13.5 0.8 0.43 10.7 0.3 1.9 1 1 1 2 2 2 0 Hemerythrin HHE cation binding domain GAT PF03127.9 gi|557694905|ref|YP_008797959.1| - 0.066 13.1 1.4 0.099 12.6 0.9 1.3 1 0 0 1 1 1 0 GAT domain DUF948 PF06103.6 gi|557694905|ref|YP_008797959.1| - 0.073 12.9 1.0 0.42 10.5 0.7 2.0 1 1 0 1 1 1 0 Bacterial protein of unknown function (DUF948) DUF1664 PF07889.7 gi|557694905|ref|YP_008797959.1| - 0.082 12.7 1.8 0.19 11.5 1.2 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF1664) RmuC PF02646.11 gi|557694905|ref|YP_008797959.1| - 0.097 11.4 2.3 0.14 10.9 1.6 1.3 1 1 0 1 1 1 0 RmuC family DASH_Duo1 PF08651.5 gi|557694905|ref|YP_008797959.1| - 0.097 12.2 0.7 0.31 10.6 0.2 1.9 1 1 1 2 2 2 0 DASH complex subunit Duo1 PilJ PF13675.1 gi|557694905|ref|YP_008797959.1| - 0.11 12.8 0.1 0.13 12.5 0.1 1.2 1 0 0 1 1 1 0 Type IV pili methyl-accepting chemotaxis transducer N-term DUF4061 PF13270.1 gi|557694905|ref|YP_008797959.1| - 0.13 12.4 1.3 0.35 10.9 0.5 1.8 1 1 1 2 2 2 0 Domain of unknown function (DUF4061) DUF310 PF03750.8 gi|557694905|ref|YP_008797959.1| - 0.13 12.4 0.1 0.38 10.9 0.0 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF310) Spc7 PF08317.6 gi|557694905|ref|YP_008797959.1| - 0.14 10.8 2.7 0.16 10.5 1.9 1.0 1 0 0 1 1 1 0 Spc7 kinetochore protein Syntaxin PF00804.20 gi|557694905|ref|YP_008797959.1| - 0.14 12.3 1.9 0.4 10.8 1.3 1.7 1 1 0 1 1 1 0 Syntaxin APG6 PF04111.7 gi|557694905|ref|YP_008797959.1| - 0.14 11.1 1.9 0.18 10.8 1.3 1.1 1 0 0 1 1 1 0 Autophagy protein Apg6 Vps51 PF08700.6 gi|557694905|ref|YP_008797959.1| - 0.15 11.9 1.9 8.4 6.3 1.3 2.2 1 1 0 1 1 1 0 Vps51/Vps67 DUF3461 PF11944.3 gi|557694905|ref|YP_008797959.1| - 0.15 11.9 1.1 0.22 11.3 0.7 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF3461) Syntaxin-6_N PF09177.6 gi|557694905|ref|YP_008797959.1| - 0.17 12.3 1.8 0.32 11.4 1.2 1.6 1 1 0 1 1 1 0 Syntaxin 6, N-terminal DUF3782 PF12644.2 gi|557694905|ref|YP_008797959.1| - 0.19 11.5 1.4 0.4 10.5 1.0 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF3782) BLOC1_2 PF10046.4 gi|557694905|ref|YP_008797959.1| - 0.29 11.2 2.5 0.57 10.3 1.8 1.4 1 1 0 1 1 1 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 CorA PF01544.13 gi|557694905|ref|YP_008797959.1| - 0.35 9.8 4.2 1.5 7.7 0.4 1.9 1 1 2 3 3 3 0 CorA-like Mg2+ transporter protein PspB PF06667.7 gi|557694905|ref|YP_008797959.1| - 0.36 10.8 1.6 1.4 8.9 0.2 2.1 1 1 1 2 2 2 0 Phage shock protein B TMF_TATA_bd PF12325.3 gi|557694905|ref|YP_008797959.1| - 2.2 8.0 7.6 0.37 10.5 2.1 1.9 2 0 0 2 2 2 0 TATA element modulatory factor 1 TATA binding IncA PF04156.9 gi|557694906|ref|YP_008797960.1| - 0.0001 21.9 51.3 0.029 13.9 18.1 2.5 1 1 1 2 2 2 2 IncA protein DUF4201 PF13870.1 gi|557694906|ref|YP_008797960.1| - 0.00014 21.4 13.7 0.00014 21.4 9.5 3.4 1 1 2 3 3 3 1 Domain of unknown function (DUF4201) Reo_sigmaC PF04582.7 gi|557694906|ref|YP_008797960.1| - 0.00033 19.9 15.7 0.07 12.2 2.8 3.2 2 1 1 3 3 3 3 Reovirus sigma C capsid protein Baculo_PEP_C PF04513.7 gi|557694906|ref|YP_008797960.1| - 0.0011 18.7 16.1 12 5.7 7.2 3.7 1 1 1 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus AAA_13 PF13166.1 gi|557694906|ref|YP_008797960.1| - 0.0016 17.0 19.3 0.0016 17.0 13.4 2.0 1 1 1 2 2 2 2 AAA domain DUF948 PF06103.6 gi|557694906|ref|YP_008797960.1| - 0.0017 18.1 15.5 0.018 14.8 0.5 4.2 2 1 2 4 4 4 1 Bacterial protein of unknown function (DUF948) EzrA PF06160.7 gi|557694906|ref|YP_008797960.1| - 0.002 16.3 24.6 0.002 16.3 17.0 2.6 1 1 2 3 3 3 1 Septation ring formation regulator, EzrA COG2 PF06148.6 gi|557694906|ref|YP_008797960.1| - 0.0027 17.5 9.8 0.0027 17.5 6.8 4.2 1 1 2 3 3 3 1 COG (conserved oligomeric Golgi) complex component, COG2 DUF1664 PF07889.7 gi|557694906|ref|YP_008797960.1| - 0.0028 17.4 26.2 0.15 11.8 3.9 3.8 1 1 3 4 4 4 2 Protein of unknown function (DUF1664) Atg14 PF10186.4 gi|557694906|ref|YP_008797960.1| - 0.0034 16.3 7.9 0.0034 16.3 5.5 3.0 1 1 2 3 3 3 1 UV radiation resistance protein and autophagy-related subunit 14 DUF3450 PF11932.3 gi|557694906|ref|YP_008797960.1| - 0.0035 16.6 28.7 0.094 11.9 2.8 3.4 1 1 1 3 3 3 2 Protein of unknown function (DUF3450) GAS PF13851.1 gi|557694906|ref|YP_008797960.1| - 0.0039 16.4 45.4 0.27 10.4 6.0 3.1 1 1 1 3 3 3 3 Growth-arrest specific micro-tubule binding Seryl_tRNA_N PF02403.17 gi|557694906|ref|YP_008797960.1| - 0.0088 16.0 40.1 0.028 14.4 6.1 4.1 1 1 0 3 3 3 1 Seryl-tRNA synthetase N-terminal domain TMF_TATA_bd PF12325.3 gi|557694906|ref|YP_008797960.1| - 0.01 15.5 51.0 0.057 13.1 3.7 4.2 1 1 3 4 4 4 0 TATA element modulatory factor 1 TATA binding CCDC155 PF14662.1 gi|557694906|ref|YP_008797960.1| - 0.011 15.3 47.4 0.0063 16.1 21.0 3.0 1 1 1 2 2 2 0 Coiled-coil region of CCDC155 Spc7 PF08317.6 gi|557694906|ref|YP_008797960.1| - 0.029 13.0 43.9 0.11 11.1 13.6 3.1 1 1 2 3 3 3 0 Spc7 kinetochore protein PRANC PF09372.5 gi|557694906|ref|YP_008797960.1| - 0.054 13.4 2.2 1.2 9.1 0.1 3.3 3 0 0 3 3 3 0 PRANC domain Mod_r PF07200.8 gi|557694906|ref|YP_008797960.1| - 0.058 13.3 37.2 0.13 12.1 6.0 3.6 1 1 2 3 3 3 0 Modifier of rudimentary (Mod(r)) protein Sigma70_r4_2 PF08281.7 gi|557694906|ref|YP_008797960.1| - 0.099 12.1 8.8 2.5 7.6 0.2 3.7 3 0 0 3 3 3 0 Sigma-70, region 4 NPV_P10 PF05531.7 gi|557694906|ref|YP_008797960.1| - 0.11 12.7 11.7 0.08 13.2 0.9 4.2 2 1 2 4 4 4 0 Nucleopolyhedrovirus P10 protein STAT_alpha PF01017.15 gi|557694906|ref|YP_008797960.1| - 0.12 12.0 28.9 0.14 11.8 7.1 3.9 1 1 1 3 3 3 0 STAT protein, all-alpha domain MHC_II_beta PF00969.14 gi|557694906|ref|YP_008797960.1| - 0.22 11.5 1.1 1.2 9.1 0.0 2.7 2 2 1 3 3 2 0 Class II histocompatibility antigen, beta domain Laminin_II PF06009.7 gi|557694906|ref|YP_008797960.1| - 0.23 11.2 28.2 0.22 11.2 3.8 3.6 1 1 3 4 4 4 0 Laminin Domain II HrpB7 PF09486.5 gi|557694906|ref|YP_008797960.1| - 0.28 11.1 27.9 0.3 10.9 2.2 4.4 1 1 3 4 4 4 0 Bacterial type III secretion protein (HrpB7) Prefoldin PF02996.12 gi|557694906|ref|YP_008797960.1| - 0.34 10.5 35.0 0.084 12.5 0.5 5.7 3 2 3 6 6 6 0 Prefoldin subunit COG5 PF10392.4 gi|557694906|ref|YP_008797960.1| - 0.34 10.8 25.2 0.23 11.4 1.3 3.8 1 1 1 3 3 3 0 Golgi transport complex subunit 5 FliJ PF02050.11 gi|557694906|ref|YP_008797960.1| - 0.37 10.8 41.6 0.23 11.5 0.9 3.4 1 1 2 3 3 3 0 Flagellar FliJ protein TPR_MLP1_2 PF07926.7 gi|557694906|ref|YP_008797960.1| - 0.41 10.3 46.9 0.83 9.4 7.0 4.0 1 1 3 4 4 4 0 TPR/MLP1/MLP2-like protein DUF2680 PF10925.3 gi|557694906|ref|YP_008797960.1| - 0.49 10.3 5.3 7.2 6.5 0.1 3.3 2 0 0 2 2 2 0 Protein of unknown function (DUF2680) Tektin PF03148.9 gi|557694906|ref|YP_008797960.1| - 0.68 8.4 41.1 0.046 12.2 0.6 3.9 1 1 1 3 3 3 0 Tektin family Cast PF10174.4 gi|557694906|ref|YP_008797960.1| - 0.78 7.7 50.1 48 1.7 34.7 2.1 1 1 0 1 1 1 0 RIM-binding protein of the cytomatrix active zone DUF972 PF06156.8 gi|557694906|ref|YP_008797960.1| - 0.79 10.0 38.0 9.1 6.6 4.5 4.3 1 1 2 3 3 3 0 Protein of unknown function (DUF972) AAA_27 PF13514.1 gi|557694906|ref|YP_008797960.1| - 1.2 6.7 39.1 0.25 8.9 13.9 2.2 1 1 0 1 1 1 0 AAA domain DUF2937 PF11157.3 gi|557694906|ref|YP_008797960.1| - 1.2 8.4 12.6 0.71 9.1 0.4 3.8 1 1 3 4 4 4 0 Protein of unknown function (DUF2937) CALCOCO1 PF07888.6 gi|557694906|ref|YP_008797960.1| - 1.7 6.8 41.2 2.8 6.1 8.5 2.8 1 1 1 2 2 2 0 Calcium binding and coiled-coil domain (CALCOCO1) like TMF_DNA_bd PF12329.3 gi|557694906|ref|YP_008797960.1| - 3.3 7.5 55.3 0.18 11.5 2.0 5.0 3 2 1 4 4 4 0 TATA element modulatory factor 1 DNA binding Cauli_AT PF03233.8 gi|557694906|ref|YP_008797960.1| - 3.4 7.3 21.0 0.61 9.7 2.8 3.3 1 1 2 3 3 3 0 Aphid transmission protein ATG16 PF08614.6 gi|557694906|ref|YP_008797960.1| - 3.4 7.4 41.8 2.2 8.0 1.4 3.4 1 1 2 3 3 3 0 Autophagy protein 16 (ATG16) DUF4248 PF14053.1 gi|557694906|ref|YP_008797960.1| - 3.7 7.1 7.0 1.5 8.4 0.4 3.3 3 1 1 4 4 3 0 Domain of unknown function (DUF4248) DUF3584 PF12128.3 gi|557694906|ref|YP_008797960.1| - 4.8 4.3 37.3 8 3.6 21.7 2.1 1 1 0 1 1 1 0 Protein of unknown function (DUF3584) ADIP PF11559.3 gi|557694906|ref|YP_008797960.1| - 5.3 6.9 41.7 0.71 9.7 1.0 3.8 1 1 2 3 3 3 0 Afadin- and alpha -actinin-Binding CENP-F_leu_zip PF10473.4 gi|557694906|ref|YP_008797960.1| - 6.5 6.6 57.6 5.1 6.9 13.1 3.2 1 1 2 3 3 3 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DUF4200 PF13863.1 gi|557694906|ref|YP_008797960.1| - 6.8 6.6 52.8 2.9 7.8 11.4 4.0 1 1 3 4 4 4 0 Domain of unknown function (DUF4200) Flu_NS2 PF00601.14 gi|557694906|ref|YP_008797960.1| - 7.8 6.7 21.1 0.8 9.9 4.5 4.0 1 1 1 3 3 3 0 Influenza non-structural protein (NS2) V_ATPase_I PF01496.14 gi|557694906|ref|YP_008797960.1| - 8.5 4.0 36.9 1.5 6.6 7.9 3.1 1 1 1 2 2 1 0 V-type ATPase 116kDa subunit family DUF342 PF03961.8 gi|557694906|ref|YP_008797960.1| - 9.3 4.5 37.2 2.1 6.6 2.8 3.1 1 1 2 3 3 3 0 Protein of unknown function (DUF342) zf-RING_2 PF13639.1 gi|557694907|ref|YP_008797961.1| - 2.5e-11 43.2 5.4 3.6e-11 42.6 3.7 1.2 1 0 0 1 1 1 1 Ring finger domain zf-C3HC4_2 PF13923.1 gi|557694907|ref|YP_008797961.1| - 0.00016 21.6 7.1 0.00027 20.9 4.9 1.4 1 0 0 1 1 1 1 Zinc finger, C3HC4 type (RING finger) UPF0547 PF10571.4 gi|557694907|ref|YP_008797961.1| - 0.00027 20.5 10.2 0.0013 18.3 2.5 2.3 2 0 0 2 2 2 1 Uncharacterised protein family UPF0547 PHD PF00628.24 gi|557694907|ref|YP_008797961.1| - 0.00028 20.5 4.7 0.00043 19.9 3.2 1.3 1 0 0 1 1 1 1 PHD-finger Prok-RING_1 PF14446.1 gi|557694907|ref|YP_008797961.1| - 0.00071 19.2 8.1 0.003 17.2 5.6 1.9 1 1 0 1 1 1 1 Prokaryotic RING finger family 1 zf-rbx1 PF12678.2 gi|557694907|ref|YP_008797961.1| - 0.00088 19.3 0.8 0.0016 18.5 0.6 1.4 1 0 0 1 1 1 1 RING-H2 zinc finger zf-ribbon_3 PF13248.1 gi|557694907|ref|YP_008797961.1| - 0.0016 17.6 8.6 0.14 11.3 1.2 2.3 2 0 0 2 2 2 2 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|557694907|ref|YP_008797961.1| - 0.0028 17.0 4.7 0.16 11.5 0.2 2.3 2 0 0 2 2 2 2 zinc-ribbon domain zf-C3HC4_3 PF13920.1 gi|557694907|ref|YP_008797961.1| - 0.0031 17.1 5.8 0.0031 17.1 3.3 1.6 2 0 0 2 2 2 1 Zinc finger, C3HC4 type (RING finger) zf-RING_5 PF14634.1 gi|557694907|ref|YP_008797961.1| - 0.0033 17.1 5.7 0.0049 16.5 3.9 1.3 1 0 0 1 1 1 1 zinc-RING finger domain C1_1 PF00130.17 gi|557694907|ref|YP_008797961.1| - 0.0039 16.9 1.6 0.0039 16.9 1.1 1.5 1 1 0 1 1 1 1 Phorbol esters/diacylglycerol binding domain (C1 domain) DUF4206 PF13901.1 gi|557694907|ref|YP_008797961.1| - 0.0043 16.6 2.6 0.0064 16.0 1.8 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4206) zf-RING-like PF08746.6 gi|557694907|ref|YP_008797961.1| - 0.0061 16.5 6.7 0.013 15.5 4.7 1.5 1 1 0 1 1 1 1 RING-like domain zf-C3HC4 PF00097.20 gi|557694907|ref|YP_008797961.1| - 0.008 15.8 5.8 0.012 15.3 4.0 1.2 1 0 0 1 1 1 1 Zinc finger, C3HC4 type (RING finger) zf-RING_4 PF14570.1 gi|557694907|ref|YP_008797961.1| - 0.078 12.5 5.0 0.21 11.2 3.5 1.6 1 1 0 1 1 1 0 RING/Ubox like zinc-binding domain DZR PF12773.2 gi|557694907|ref|YP_008797961.1| - 0.1 12.4 7.2 1.5 8.7 5.0 2.1 1 1 0 1 1 1 0 Double zinc ribbon zf-MIZ PF02891.15 gi|557694907|ref|YP_008797961.1| - 0.28 10.7 2.5 0.49 9.9 1.8 1.4 1 0 0 1 1 1 0 MIZ/SP-RING zinc finger FANCL_C PF11793.3 gi|557694907|ref|YP_008797961.1| - 0.4 10.6 7.6 13 5.8 5.2 2.3 1 1 0 1 1 1 0 FANCL C-terminal domain zinc-ribbons_6 PF07191.7 gi|557694907|ref|YP_008797961.1| - 0.9 9.3 4.5 3.7 7.4 3.1 1.8 1 1 0 1 1 1 0 zinc-ribbons zf-AN1 PF01428.11 gi|557694907|ref|YP_008797961.1| - 0.94 9.4 3.9 2.5 8.0 0.3 2.1 1 1 1 2 2 2 0 AN1-like Zinc finger zf-Mss51 PF13824.1 gi|557694907|ref|YP_008797961.1| - 1.2 9.0 7.5 0.36 10.7 1.4 2.1 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 DUF35_N PF12172.3 gi|557694907|ref|YP_008797961.1| - 1.9 8.4 4.9 7.5 6.5 0.3 2.6 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) TF_Zn_Ribbon PF08271.7 gi|557694907|ref|YP_008797961.1| - 2.5 7.5 11.4 9.5 5.6 3.5 2.7 2 1 0 2 2 2 0 TFIIB zinc-binding DNA_RNApol_7kD PF03604.8 gi|557694907|ref|YP_008797961.1| - 6.3 6.3 6.2 2.6 7.6 1.0 2.2 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit SpoIIIAC PF06686.6 gi|557694907|ref|YP_008797961.1| - 6.5 6.6 8.7 5.7 6.8 0.3 3.0 3 0 0 3 3 3 0 Stage III sporulation protein AC/AD protein family tRNA-synt_2b PF00587.20 gi|557694908|ref|YP_008797962.1| - 5e-45 153.1 0.0 8.3e-45 152.4 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.15 gi|557694908|ref|YP_008797962.1| - 6.1e-22 77.3 0.1 1.1e-21 76.6 0.1 1.4 1 0 0 1 1 1 1 Anticodon binding domain Zn_Tnp_IS1595 PF12760.2 gi|557694908|ref|YP_008797962.1| - 0.073 12.8 0.1 1.7 8.5 0.0 2.6 2 0 0 2 2 2 0 Transposase zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|557694908|ref|YP_008797962.1| - 0.09 12.7 0.1 9.9 6.2 0.0 2.5 2 0 0 2 2 2 0 Zinc ribbon domain zinc_ribbon_4 PF13717.1 gi|557694908|ref|YP_008797962.1| - 0.096 12.3 4.2 0.28 10.9 0.1 3.2 4 0 0 4 4 4 0 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|557694908|ref|YP_008797962.1| - 0.098 12.2 4.4 0.22 11.1 0.1 3.1 4 0 0 4 4 4 0 zinc-ribbon domain Oxidored_q4 PF00507.14 gi|557694909|ref|YP_008797963.1| - 2.5e-09 36.8 0.5 3.4e-09 36.4 0.4 1.2 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 ABC2_membrane_3 PF12698.2 gi|557694909|ref|YP_008797963.1| - 0.00034 19.7 2.4 0.00039 19.5 1.7 1.0 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|557694909|ref|YP_008797963.1| - 0.11 11.6 6.8 0.15 11.1 4.7 1.2 1 0 0 1 1 1 0 ABC-2 family transporter protein DUF3325 PF11804.3 gi|557694909|ref|YP_008797963.1| - 0.13 12.1 5.0 0.085 12.8 2.2 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF3325) IncA PF04156.9 gi|557694909|ref|YP_008797963.1| - 2.9 7.4 11.3 1.4 8.4 0.2 2.0 2 0 0 2 2 2 0 IncA protein NADHdh PF00146.16 gi|557694910|ref|YP_008797964.1| - 3e-71 240.0 19.0 3.9e-71 239.6 13.2 1.0 1 0 0 1 1 1 1 NADH dehydrogenase Fer4 PF00037.22 gi|557694912|ref|YP_008797966.1| - 1.4e-10 40.2 10.6 1.5e-07 30.7 1.9 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|557694912|ref|YP_008797966.1| - 2e-09 37.6 1.5 9.9e-05 22.6 0.1 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|557694912|ref|YP_008797966.1| - 1.7e-07 31.1 0.7 0.007 16.3 0.1 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|557694912|ref|YP_008797966.1| - 1.7e-07 30.9 1.8 0.0033 17.2 0.1 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|557694912|ref|YP_008797966.1| - 1.8e-07 31.2 0.6 0.0074 16.5 0.0 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|557694912|ref|YP_008797966.1| - 2e-07 30.7 2.5 0.0044 16.8 0.2 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|557694912|ref|YP_008797966.1| - 7.1e-07 28.7 10.9 0.00026 20.7 1.6 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.1 gi|557694912|ref|YP_008797966.1| - 1.5e-06 28.5 0.1 0.0087 16.4 0.0 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|557694912|ref|YP_008797966.1| - 2.4e-06 27.7 1.1 0.031 14.6 0.1 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|557694912|ref|YP_008797966.1| - 1.7e-05 25.4 2.0 0.013 16.2 0.3 2.6 2 1 1 3 3 3 3 4Fe-4S double cluster binding domain Fer4_6 PF12837.2 gi|557694912|ref|YP_008797966.1| - 7.1e-05 22.4 2.7 7.1e-05 22.4 1.8 2.3 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_4 PF12800.2 gi|557694912|ref|YP_008797966.1| - 0.0075 16.5 12.2 0.023 14.9 1.5 2.2 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_15 PF13459.1 gi|557694912|ref|YP_008797966.1| - 0.076 13.5 8.6 0.54 10.8 0.7 2.4 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_3 PF12798.2 gi|557694912|ref|YP_008797966.1| - 0.34 11.5 15.4 0.11 13.0 2.5 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_13 PF13370.1 gi|557694912|ref|YP_008797966.1| - 1.8 8.9 10.0 3.5 8.0 0.4 2.6 2 0 0 2 2 2 0 4Fe-4S single cluster domain COX1 PF00115.15 gi|557694913|ref|YP_008797967.1| - 2.2e-156 520.9 63.6 2.6e-156 520.7 44.1 1.0 1 0 0 1 1 1 1 Cytochrome C and Quinol oxidase polypeptide I COX2 PF00116.15 gi|557694914|ref|YP_008797968.1| - 3.6e-22 78.4 0.0 2.4e-20 72.5 0.0 2.1 1 1 1 2 2 2 2 Cytochrome C oxidase subunit II, periplasmic domain Cupredoxin_1 PF13473.1 gi|557694914|ref|YP_008797968.1| - 8.9e-10 38.3 0.0 1.4e-09 37.7 0.0 1.4 1 1 0 1 1 1 1 Cupredoxin-like domain Yip1 PF04893.12 gi|557694915|ref|YP_008797969.1| - 0.017 14.6 1.6 0.018 14.5 1.1 1.0 1 0 0 1 1 1 0 Yip1 domain ABC2_membrane_5 PF13346.1 gi|557694915|ref|YP_008797969.1| - 0.02 14.1 3.6 0.025 13.8 2.5 1.1 1 0 0 1 1 1 0 ABC-2 family transporter protein DUF3733 PF12534.3 gi|557694915|ref|YP_008797969.1| - 0.055 12.7 0.0 0.08 12.2 0.0 1.4 1 0 0 1 1 1 0 Leucine-rich repeat containing protein 8 Virul_fac_BrkB PF03631.10 gi|557694915|ref|YP_008797969.1| - 0.058 12.7 2.3 0.07 12.4 1.6 1.0 1 0 0 1 1 1 0 Virulence factor BrkB NADH-u_ox-rdase PF10785.4 gi|557694915|ref|YP_008797969.1| - 0.14 12.3 0.3 2.8 8.2 0.2 2.0 1 1 0 1 1 1 0 NADH-ubiquinone oxidoreductase complex I, 21 kDa subunit DUF2207 PF09972.4 gi|557694915|ref|YP_008797969.1| - 0.38 9.2 1.9 0.37 9.3 1.4 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) zf-DHHC PF01529.15 gi|557694915|ref|YP_008797969.1| - 0.38 10.1 2.2 0.46 9.8 1.5 1.1 1 0 0 1 1 1 0 DHHC palmitoyltransferase Gram_pos_anchor PF00746.16 gi|557694915|ref|YP_008797969.1| - 5.2 6.9 5.1 9.1 6.2 0.2 2.1 2 0 0 2 2 2 0 Gram positive anchor COX15-CtaA PF02628.10 gi|557694916|ref|YP_008797970.1| - 2e-12 46.5 18.8 9.7e-07 27.9 7.8 2.0 1 1 1 2 2 2 2 Cytochrome oxidase assembly protein PepSY_TM_3 PF13706.1 gi|557694916|ref|YP_008797970.1| - 2 7.9 5.4 1.9 7.9 0.2 2.6 2 0 0 2 2 2 0 PepSY-associated TM helix Bac_luciferase PF00296.15 gi|557694917|ref|YP_008797971.1| - 8.9e-57 192.5 0.0 1.4e-55 188.6 0.0 1.9 1 1 1 2 2 2 2 Luciferase-like monooxygenase Phos_pyr_kin PF08543.7 gi|557694918|ref|YP_008797972.1| - 2.2e-98 328.3 2.8 3e-98 327.9 1.9 1.2 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase Aldolase_2 PF10120.4 gi|557694918|ref|YP_008797972.1| - 3.2e-60 202.3 0.0 8.5e-60 200.9 0.0 1.7 2 0 0 2 2 2 1 Putative aldolase PfkB PF00294.19 gi|557694918|ref|YP_008797972.1| - 1.7e-14 53.6 0.5 2.7e-14 52.9 0.3 1.2 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Carb_kinase PF01256.12 gi|557694918|ref|YP_008797972.1| - 0.00019 20.7 4.1 0.0003 20.1 2.8 1.3 1 0 0 1 1 1 1 Carbohydrate kinase UDPG_MGDP_dh_C PF03720.10 gi|557694918|ref|YP_008797972.1| - 0.11 12.6 0.0 0.72 10.0 0.0 2.3 2 0 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain NTP_transf_4 PF13562.1 gi|557694919|ref|YP_008797973.1| - 2e-24 85.9 0.0 3.2e-24 85.3 0.0 1.3 1 0 0 1 1 1 1 Sugar nucleotidyl transferase Hexapep PF00132.19 gi|557694919|ref|YP_008797973.1| - 8.4e-08 31.3 5.0 0.019 14.4 0.0 3.8 3 0 0 3 3 3 3 Bacterial transferase hexapeptide (six repeats) PEP-utilisers_N PF05524.8 gi|557694919|ref|YP_008797973.1| - 0.049 13.4 0.0 0.082 12.6 0.0 1.3 1 0 0 1 1 1 0 PEP-utilising enzyme, N-terminal AAA_16 PF13191.1 gi|557694920|ref|YP_008797974.1| - 0.00037 20.5 0.1 0.00076 19.5 0.0 1.5 2 0 0 2 2 2 1 AAA ATPase domain AAA_19 PF13245.1 gi|557694920|ref|YP_008797974.1| - 0.00091 18.9 0.3 0.0062 16.2 0.0 2.1 2 0 0 2 2 2 1 Part of AAA domain AAA_22 PF13401.1 gi|557694920|ref|YP_008797974.1| - 0.00092 19.3 0.1 0.0067 16.5 0.0 2.0 1 1 0 2 2 2 1 AAA domain NACHT PF05729.7 gi|557694920|ref|YP_008797974.1| - 0.0012 18.5 0.2 0.003 17.2 0.1 1.6 2 0 0 2 2 2 1 NACHT domain DUF87 PF01935.12 gi|557694920|ref|YP_008797974.1| - 0.0025 17.6 0.0 0.0048 16.7 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function DUF87 Arch_ATPase PF01637.13 gi|557694920|ref|YP_008797974.1| - 0.0025 17.5 0.0 0.0075 15.9 0.0 1.8 1 1 1 2 2 2 1 Archaeal ATPase AAA_29 PF13555.1 gi|557694920|ref|YP_008797974.1| - 0.0028 17.1 0.1 0.0048 16.3 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_25 PF13481.1 gi|557694920|ref|YP_008797974.1| - 0.0043 16.4 0.2 0.0098 15.3 0.1 1.4 1 1 0 1 1 1 1 AAA domain UvrD-helicase PF00580.16 gi|557694920|ref|YP_008797974.1| - 0.0044 16.3 0.1 0.0077 15.5 0.0 1.4 1 0 0 1 1 1 1 UvrD/REP helicase N-terminal domain Miro PF08477.8 gi|557694920|ref|YP_008797974.1| - 0.0054 17.2 0.1 0.013 16.0 0.0 1.6 1 0 0 1 1 1 1 Miro-like protein ABC_tran PF00005.22 gi|557694920|ref|YP_008797974.1| - 0.008 16.4 0.4 0.0092 16.2 0.3 1.5 1 1 0 1 1 1 1 ABC transporter AAA_10 PF12846.2 gi|557694920|ref|YP_008797974.1| - 0.0087 15.5 0.0 0.0098 15.3 0.0 1.2 1 0 0 1 1 1 1 AAA-like domain FtsK_SpoIIIE PF01580.13 gi|557694920|ref|YP_008797974.1| - 0.02 14.3 0.0 0.037 13.4 0.0 1.4 1 0 0 1 1 1 0 FtsK/SpoIIIE family ATP-synt_ab PF00006.20 gi|557694920|ref|YP_008797974.1| - 0.024 14.1 0.1 0.039 13.4 0.1 1.6 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain MobB PF03205.9 gi|557694920|ref|YP_008797974.1| - 0.034 13.8 0.1 0.064 12.9 0.1 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B PduV-EutP PF10662.4 gi|557694920|ref|YP_008797974.1| - 0.038 13.4 0.0 0.058 12.8 0.0 1.4 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation cobW PF02492.14 gi|557694920|ref|YP_008797974.1| - 0.039 13.4 0.2 0.063 12.7 0.1 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA PF00004.24 gi|557694920|ref|YP_008797974.1| - 0.046 13.9 0.0 0.11 12.7 0.0 1.7 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_14 PF13173.1 gi|557694920|ref|YP_008797974.1| - 0.05 13.5 0.0 0.072 12.9 0.0 1.5 1 1 0 1 1 1 0 AAA domain DUF258 PF03193.11 gi|557694920|ref|YP_008797974.1| - 0.063 12.4 0.0 0.11 11.7 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 Pox_A32 PF04665.7 gi|557694920|ref|YP_008797974.1| - 0.069 12.4 0.2 0.12 11.6 0.1 1.3 1 0 0 1 1 1 0 Poxvirus A32 protein AAA_24 PF13479.1 gi|557694920|ref|YP_008797974.1| - 0.069 12.7 0.1 0.12 11.9 0.1 1.3 1 0 0 1 1 1 0 AAA domain AAA_23 PF13476.1 gi|557694920|ref|YP_008797974.1| - 0.11 12.8 0.4 0.27 11.5 0.1 1.6 2 0 0 2 2 2 0 AAA domain Mg_chelatase PF01078.16 gi|557694920|ref|YP_008797974.1| - 0.11 11.6 0.1 0.18 10.9 0.1 1.2 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI SRPRB PF09439.5 gi|557694920|ref|YP_008797974.1| - 0.13 11.4 0.4 0.29 10.3 0.1 1.6 2 0 0 2 2 2 0 Signal recognition particle receptor beta subunit ThiW PF09512.5 gi|557694921|ref|YP_008797975.1| - 2.6e-31 108.4 19.1 2.2e-30 105.4 13.3 1.9 1 1 0 1 1 1 1 Thiamine-precursor transporter protein (ThiW) DUF3816 PF12822.2 gi|557694921|ref|YP_008797975.1| - 1.8e-07 31.1 15.6 4.4e-07 29.9 10.8 1.6 1 1 0 1 1 1 1 Protein of unknown function (DUF3816) 5TM-5TMR_LYT PF07694.7 gi|557694921|ref|YP_008797975.1| - 0.00099 18.4 13.9 0.00099 18.4 9.6 2.1 1 1 0 2 2 2 1 5TMR of 5TMR-LYT Romo1 PF10247.4 gi|557694921|ref|YP_008797975.1| - 1.8 8.8 4.9 15 5.8 1.1 3.2 2 1 1 3 3 3 0 Reactive mitochondrial oxygen species modulator 1 GtrA PF04138.9 gi|557694922|ref|YP_008797976.1| - 3.1e-14 52.9 0.9 3.6e-14 52.6 0.6 1.1 1 0 0 1 1 1 1 GtrA-like protein SbmA_BacA PF05992.7 gi|557694922|ref|YP_008797976.1| - 0.082 12.0 1.4 4.1 6.5 0.1 2.0 1 1 1 2 2 2 0 SbmA/BacA-like family SURF4 PF02077.10 gi|557694922|ref|YP_008797976.1| - 0.92 8.8 3.6 1.7 7.9 2.5 1.4 1 1 0 1 1 1 0 SURF4 family IMS PF00817.15 gi|557694923|ref|YP_008797977.1| - 1e-42 145.4 0.3 1.7e-42 144.6 0.0 1.5 2 0 0 2 2 2 1 impB/mucB/samB family IMS_C PF11799.3 gi|557694923|ref|YP_008797977.1| - 1.7e-09 37.6 0.3 3.5e-09 36.6 0.2 1.5 1 0 0 1 1 1 1 impB/mucB/samB family C-terminal domain HHH_5 PF14520.1 gi|557694923|ref|YP_008797977.1| - 3.3e-07 30.3 0.3 1.2e-06 28.5 0.0 2.2 3 0 0 3 3 3 1 Helix-hairpin-helix domain IMS_HHH PF11798.3 gi|557694923|ref|YP_008797977.1| - 3.8e-07 29.7 0.0 1e-06 28.3 0.0 1.8 1 0 0 1 1 1 1 IMS family HHH motif TfoX_C PF04994.8 gi|557694923|ref|YP_008797977.1| - 0.017 14.9 0.1 0.095 12.6 0.0 2.2 2 0 0 2 2 2 0 TfoX C-terminal domain Hist_deacetyl PF00850.14 gi|557694924|ref|YP_008797978.1| - 2.8e-74 250.2 0.0 3.2e-74 250.0 0.0 1.0 1 0 0 1 1 1 1 Histone deacetylase domain DUF99 PF01949.11 gi|557694925|ref|YP_008797979.1| - 3.2e-53 179.6 0.0 3.8e-53 179.3 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF99 Lambda_tail_I PF06805.7 gi|557694925|ref|YP_008797979.1| - 0.12 12.1 0.0 0.39 10.5 0.0 1.8 2 0 0 2 2 2 0 Bacteriophage lambda tail assembly protein I NTP_transferase PF00483.18 gi|557694926|ref|YP_008797980.1| - 1e-30 106.8 0.0 1.2e-30 106.6 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.2 gi|557694926|ref|YP_008797980.1| - 1.8e-15 57.3 0.0 2.4e-15 56.9 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep PF00132.19 gi|557694926|ref|YP_008797980.1| - 3.4e-10 38.9 1.4 0.00039 19.8 0.1 4.0 2 1 1 4 4 4 3 Bacterial transferase hexapeptide (six repeats) IspD PF01128.14 gi|557694926|ref|YP_008797980.1| - 4.6e-05 23.0 0.0 8.5e-05 22.1 0.0 1.4 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Glycos_transf_2 PF00535.21 gi|557694926|ref|YP_008797980.1| - 0.0075 15.9 0.0 0.011 15.3 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Hexapep_2 PF14602.1 gi|557694926|ref|YP_008797980.1| - 2.5 7.7 11.9 0.25 10.9 0.7 4.2 3 2 1 4 4 4 0 Hexapeptide repeat of succinyl-transferase TP_methylase PF00590.15 gi|557694927|ref|YP_008797981.1| - 4.8e-23 81.9 0.0 7.2e-23 81.3 0.0 1.3 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases DUF357 PF04010.8 gi|557694927|ref|YP_008797981.1| - 1.5e-10 40.6 1.9 2.9e-10 39.6 0.2 2.4 4 0 0 4 4 4 1 Protein of unknown function (DUF357) PHY PF00360.15 gi|557694927|ref|YP_008797981.1| - 0.1 11.7 0.0 0.16 11.0 0.0 1.3 1 0 0 1 1 1 0 Phytochrome region DIL PF01843.14 gi|557694927|ref|YP_008797981.1| - 0.12 12.2 0.2 0.37 10.6 0.1 1.7 2 0 0 2 2 2 0 DIL domain DUF2990 PF11693.3 gi|557694927|ref|YP_008797981.1| - 0.14 12.0 0.0 0.46 10.3 0.0 1.9 1 0 0 1 1 1 0 Protein of unknown function (DUF2990) CTP_transf_2 PF01467.21 gi|557694928|ref|YP_008797982.1| - 5.5e-16 59.0 0.0 6.5e-16 58.7 0.0 1.1 1 0 0 1 1 1 1 Cytidylyltransferase FAD_syn PF06574.7 gi|557694928|ref|YP_008797982.1| - 3.8e-07 29.8 0.4 3.3e-06 26.8 0.2 2.1 1 1 1 2 2 2 1 FAD synthetase CTP-dep_RFKase PF01982.11 gi|557694929|ref|YP_008797983.1| - 1.1e-28 99.3 0.1 1.6e-28 98.7 0.1 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF120 HTH_Crp_2 PF13545.1 gi|557694929|ref|YP_008797983.1| - 0.00056 19.6 0.2 0.0011 18.7 0.1 1.5 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain MarR_2 PF12802.2 gi|557694929|ref|YP_008797983.1| - 0.0014 18.2 0.4 0.0029 17.2 0.3 1.6 1 0 0 1 1 1 1 MarR family MarR PF01047.17 gi|557694929|ref|YP_008797983.1| - 0.0017 18.0 0.3 0.0035 16.9 0.2 1.5 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.1 gi|557694929|ref|YP_008797983.1| - 0.0061 16.8 0.2 0.011 16.0 0.1 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain Rrf2 PF02082.15 gi|557694929|ref|YP_008797983.1| - 0.073 13.2 0.2 0.14 12.2 0.1 1.5 1 0 0 1 1 1 0 Transcriptional regulator HTH_20 PF12840.2 gi|557694929|ref|YP_008797983.1| - 0.078 12.7 0.2 0.18 11.6 0.2 1.7 1 1 0 1 1 1 0 Helix-turn-helix domain Proteasome PF00227.21 gi|557694930|ref|YP_008797984.1| - 3.1e-47 160.3 0.3 3.7e-47 160.0 0.2 1.0 1 0 0 1 1 1 1 Proteasome subunit RTC PF01137.16 gi|557694931|ref|YP_008797985.1| - 4.1e-75 251.4 0.1 4.7e-75 251.2 0.1 1.0 1 0 0 1 1 1 1 RNA 3'-terminal phosphate cyclase RTC_insert PF05189.8 gi|557694931|ref|YP_008797985.1| - 3.8e-21 75.0 0.1 6.4e-21 74.3 0.1 1.4 1 0 0 1 1 1 1 RNA 3'-terminal phosphate cyclase (RTC), insert domain CTP_transf_2 PF01467.21 gi|557694932|ref|YP_008797986.1| - 1.3e-13 51.2 0.0 1.7e-13 50.9 0.0 1.1 1 0 0 1 1 1 1 Cytidylyltransferase FAD_syn PF06574.7 gi|557694932|ref|YP_008797986.1| - 0.15 11.6 0.0 0.27 10.8 0.0 1.4 1 0 0 1 1 1 0 FAD synthetase SAM_adeno_trans PF01887.11 gi|557694933|ref|YP_008797987.1| - 3.8e-78 262.0 0.1 4.3e-78 261.9 0.0 1.0 1 0 0 1 1 1 1 S-adenosyl-l-methionine hydroxide adenosyltransferase PTH2 PF01981.11 gi|557694934|ref|YP_008797988.1| - 7.6e-43 144.8 0.0 8.4e-43 144.7 0.0 1.0 1 0 0 1 1 1 1 Peptidyl-tRNA hydrolase PTH2 Rhomboid PF01694.17 gi|557694935|ref|YP_008797989.1| - 2e-30 105.7 16.8 2e-30 105.7 11.7 1.9 2 0 0 2 2 2 1 Rhomboid family DUF1751 PF08551.5 gi|557694935|ref|YP_008797989.1| - 0.018 15.3 3.3 0.018 15.3 2.3 2.9 2 1 1 3 3 3 0 Eukaryotic integral membrane protein (DUF1751) DUF1049 PF06305.6 gi|557694935|ref|YP_008797989.1| - 5.2 6.6 13.1 1.1 8.7 0.1 3.8 3 1 0 3 3 3 0 Protein of unknown function (DUF1049) TraS PF10624.4 gi|557694935|ref|YP_008797989.1| - 6.1 6.3 9.1 2 7.9 2.6 2.2 2 0 0 2 2 2 0 Plasmid conjugative transfer entry exclusion protein TraS Oxidored_q6 PF01058.17 gi|557694936|ref|YP_008797990.1| - 3.2e-27 94.7 0.0 4e-27 94.3 0.0 1.1 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit Complex1_30kDa PF00329.14 gi|557694937|ref|YP_008797991.1| - 1.2e-30 105.7 0.0 1.7e-30 105.3 0.0 1.2 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 30 Kd subunit Propep_M14 PF02244.11 gi|557694937|ref|YP_008797991.1| - 0.0055 16.3 0.1 0.0096 15.5 0.0 1.4 1 1 0 1 1 1 1 Carboxypeptidase activation peptide Complex1_49kDa PF00346.14 gi|557694938|ref|YP_008797992.1| - 1.6e-57 194.6 0.1 4.5e-36 124.2 0.1 3.1 1 1 2 3 3 3 3 Respiratory-chain NADH dehydrogenase, 49 Kd subunit DNA_pol_B PF00136.16 gi|557694939|ref|YP_008797993.1| - 1.4e-89 301.0 0.0 1.9e-89 300.5 0.0 1.1 1 0 0 1 1 1 1 DNA polymerase family B DNA_pol_B_exo1 PF03104.14 gi|557694939|ref|YP_008797993.1| - 5.3e-27 94.5 0.0 1.2e-26 93.3 0.0 1.6 2 0 0 2 2 2 1 DNA polymerase family B, exonuclease domain RNase_H_2 PF13482.1 gi|557694939|ref|YP_008797993.1| - 1.4e-06 28.2 0.0 9e-06 25.5 0.0 2.3 2 1 0 2 2 2 1 RNase_H superfamily DNA_pol_B_exo2 PF10108.4 gi|557694939|ref|YP_008797993.1| - 0.00011 21.7 0.0 0.00036 20.1 0.0 1.8 2 0 0 2 2 2 1 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB Arginase PF00491.16 gi|557694940|ref|YP_008797994.1| - 8.1e-71 238.5 0.0 9.2e-71 238.3 0.0 1.0 1 0 0 1 1 1 1 Arginase family IPPT PF01715.12 gi|557694940|ref|YP_008797994.1| - 0.045 12.7 0.0 0.12 11.4 0.0 1.7 2 0 0 2 2 2 0 IPP transferase Mannosyl_trans PF05007.8 gi|557694941|ref|YP_008797995.1| - 0.00018 21.2 10.7 0.014 15.0 7.4 2.5 1 1 0 1 1 1 1 Mannosyltransferase (PIG-M) Nol1_Nop2_Fmu_2 PF13636.1 gi|557694942|ref|YP_008797996.1| - 7.4e-07 29.1 0.0 1e-06 28.7 0.0 1.3 1 0 0 1 1 1 1 pre-rRNA processing and ribosome biogenesis TruB-C_2 PF09157.6 gi|557694942|ref|YP_008797996.1| - 0.09 12.6 0.0 0.26 11.1 0.0 1.8 1 1 0 1 1 1 0 Pseudouridine synthase II TruB, C-terminal Nol1_Nop2_Fmu PF01189.12 gi|557694943|ref|YP_008797997.1| - 7.3e-40 137.1 0.0 1.2e-39 136.4 0.0 1.3 1 1 0 1 1 1 1 NOL1/NOP2/sun family FtsJ PF01728.14 gi|557694943|ref|YP_008797997.1| - 2.1e-06 27.8 0.0 3.5e-06 27.1 0.0 1.3 1 0 0 1 1 1 1 FtsJ-like methyltransferase PCMT PF01135.14 gi|557694943|ref|YP_008797997.1| - 0.00031 20.3 0.0 0.00053 19.5 0.0 1.3 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_18 PF12847.2 gi|557694943|ref|YP_008797997.1| - 0.0036 17.8 0.0 0.0071 16.9 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|557694943|ref|YP_008797997.1| - 0.022 14.7 0.0 0.032 14.2 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain Met_10 PF02475.11 gi|557694943|ref|YP_008797997.1| - 0.034 13.7 0.0 0.051 13.1 0.0 1.2 1 0 0 1 1 1 0 Met-10+ like-protein Methyltransf_31 PF13847.1 gi|557694943|ref|YP_008797997.1| - 0.035 13.6 0.0 0.081 12.5 0.0 1.5 1 1 0 1 1 1 0 Methyltransferase domain Fibrillarin PF01269.12 gi|557694943|ref|YP_008797997.1| - 0.12 11.3 0.0 0.2 10.5 0.0 1.3 1 0 0 1 1 1 0 Fibrillarin Ubie_methyltran PF01209.13 gi|557694943|ref|YP_008797997.1| - 0.19 10.8 0.0 0.42 9.6 0.0 1.5 2 0 0 2 2 2 0 ubiE/COQ5 methyltransferase family HhH-GPD PF00730.20 gi|557694944|ref|YP_008797998.1| - 0.0084 16.3 0.0 0.014 15.6 0.0 1.3 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein AAA_10 PF12846.2 gi|557694945|ref|YP_008797999.1| - 3.3e-15 56.3 0.2 5.3e-13 49.0 0.2 2.1 1 1 0 1 1 1 1 AAA-like domain DUF87 PF01935.12 gi|557694945|ref|YP_008797999.1| - 7.8e-15 55.3 0.0 1.8e-14 54.1 0.0 1.6 2 0 0 2 2 2 1 Domain of unknown function DUF87 AAA_25 PF13481.1 gi|557694945|ref|YP_008797999.1| - 0.0055 16.1 0.0 0.011 15.1 0.0 1.4 1 0 0 1 1 1 1 AAA domain TrwB_AAD_bind PF10412.4 gi|557694945|ref|YP_008797999.1| - 0.015 13.9 0.0 0.03 12.9 0.0 1.4 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain AAA_29 PF13555.1 gi|557694945|ref|YP_008797999.1| - 0.017 14.6 0.3 0.58 9.7 0.1 2.4 2 0 0 2 2 2 0 P-loop containing region of AAA domain MobB PF03205.9 gi|557694945|ref|YP_008797999.1| - 0.021 14.5 0.8 0.052 13.2 0.3 1.8 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B MEKHLA PF08670.6 gi|557694945|ref|YP_008797999.1| - 0.039 13.4 0.0 12 5.4 0.0 3.1 3 0 0 3 3 3 0 MEKHLA domain NurA PF09376.5 gi|557694946|ref|YP_008798000.1| - 6.5e-06 25.8 0.0 0.00018 21.1 0.0 2.6 2 1 0 2 2 2 1 NurA domain H-kinase_dim PF02895.9 gi|557694946|ref|YP_008798000.1| - 0.17 12.2 1.6 0.39 11.0 1.1 1.6 1 0 0 1 1 1 0 Signal transducing histidine kinase, homodimeric domain Med16 PF11635.3 gi|557694946|ref|YP_008798000.1| - 0.27 9.1 1.5 0.37 8.6 0.2 1.7 2 0 0 2 2 2 0 Mediator complex subunit 16 Penicillinase_R PF03965.11 gi|557694947|ref|YP_008798001.1| - 0.0073 16.3 0.1 0.019 15.0 0.0 1.7 1 1 0 1 1 1 1 Penicillinase repressor HTH_20 PF12840.2 gi|557694948|ref|YP_008798002.1| - 0.014 15.1 0.1 0.025 14.3 0.1 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_1 PF00126.22 gi|557694948|ref|YP_008798002.1| - 0.036 13.7 0.0 0.074 12.7 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family Rio2_N PF09202.6 gi|557694948|ref|YP_008798002.1| - 0.038 14.0 0.0 0.083 12.9 0.0 1.5 1 0 0 1 1 1 0 Rio2, N-terminal HTH_12 PF08461.5 gi|557694948|ref|YP_008798002.1| - 0.062 13.0 0.0 0.14 11.8 0.0 1.6 1 0 0 1 1 1 0 Ribonuclease R winged-helix domain MarR_2 PF12802.2 gi|557694948|ref|YP_008798002.1| - 0.067 12.8 0.1 0.12 12.0 0.0 1.5 1 0 0 1 1 1 0 MarR family HTH_24 PF13412.1 gi|557694949|ref|YP_008798003.1| - 0.004 16.5 0.0 0.0071 15.7 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.14 gi|557694949|ref|YP_008798003.1| - 0.046 13.4 0.0 0.079 12.6 0.0 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB PaaX PF07848.7 gi|557694949|ref|YP_008798003.1| - 0.088 12.8 0.1 0.21 11.6 0.0 1.8 2 1 0 2 2 2 0 PaaX-like protein Cytochrom_B_N PF00033.14 gi|557694950|ref|YP_008798004.1| - 0.0024 17.2 0.0 0.0028 17.0 0.0 1.0 1 0 0 1 1 1 1 Cytochrome b(N-terminal)/b6/petB Sulfate_tra_GLY PF13792.1 gi|557694950|ref|YP_008798004.1| - 0.023 14.3 3.0 0.026 14.1 2.1 1.1 1 0 0 1 1 1 0 Sulfate transporter N-terminal domain with GLY motif DUF2613 PF11021.3 gi|557694950|ref|YP_008798004.1| - 0.042 13.5 0.6 0.12 12.1 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF2613) IncA PF04156.9 gi|557694950|ref|YP_008798004.1| - 7 6.2 9.0 14 5.2 6.2 1.6 1 1 0 1 1 1 0 IncA protein DUF4414 PF14377.1 gi|557694951|ref|YP_008798005.1| - 0.078 12.9 0.3 0.08 12.8 0.2 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4414) FrhB_FdhB_C PF04432.8 gi|557694952|ref|YP_008798006.1| - 1.5e-39 135.0 1.1 5.6e-39 133.1 0.0 2.2 2 1 0 2 2 2 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus FrhB_FdhB_N PF04422.8 gi|557694952|ref|YP_008798006.1| - 2.5e-24 84.9 0.1 6.5e-24 83.6 0.0 1.7 2 0 0 2 2 2 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term Fer4_10 PF13237.1 gi|557694952|ref|YP_008798006.1| - 4.3e-09 36.0 8.9 1e-08 34.8 6.2 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|557694952|ref|YP_008798006.1| - 7.5e-09 35.4 0.8 0.0043 17.0 0.1 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.22 gi|557694952|ref|YP_008798006.1| - 2.5e-08 33.1 14.7 0.00013 21.4 2.7 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|557694952|ref|YP_008798006.1| - 2.1e-07 31.0 10.9 5.4e-07 29.7 7.5 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|557694952|ref|YP_008798006.1| - 5.6e-07 30.2 3.6 0.021 15.5 0.3 2.6 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_7 PF12838.2 gi|557694952|ref|YP_008798006.1| - 6.1e-07 29.7 13.3 6.1e-07 29.7 9.2 2.1 2 1 0 2 2 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|557694952|ref|YP_008798006.1| - 7.3e-07 28.7 13.9 0.00067 19.4 2.3 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_13 PF13370.1 gi|557694952|ref|YP_008798006.1| - 5.2e-06 26.7 7.7 0.011 16.0 0.4 3.0 3 0 0 3 3 2 2 4Fe-4S single cluster domain Fer4_2 PF12797.2 gi|557694952|ref|YP_008798006.1| - 4.3e-05 23.1 21.0 0.00047 19.9 1.4 2.7 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_3 PF12798.2 gi|557694952|ref|YP_008798006.1| - 0.00011 22.4 19.9 0.03 14.8 5.0 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.1 gi|557694952|ref|YP_008798006.1| - 0.00022 21.5 14.2 0.026 14.9 2.4 2.5 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|557694952|ref|YP_008798006.1| - 0.00024 21.1 17.8 0.0065 16.7 0.4 3.1 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|557694952|ref|YP_008798006.1| - 0.00037 20.3 14.9 0.02 14.7 10.6 2.5 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|557694952|ref|YP_008798006.1| - 0.0011 19.4 11.7 0.035 14.6 1.4 2.7 1 1 1 2 2 2 2 4Fe-4S single cluster domain Fer4_17 PF13534.1 gi|557694952|ref|YP_008798006.1| - 0.0018 18.5 15.1 0.059 13.7 1.6 2.6 2 1 1 3 3 2 2 4Fe-4S dicluster domain DNA_gyraseA_C PF03989.8 gi|557694952|ref|YP_008798006.1| - 0.11 11.7 0.1 0.23 10.7 0.0 1.5 1 0 0 1 1 1 0 DNA gyrase C-terminal domain, beta-propeller UPF0054 PF02130.12 gi|557694953|ref|YP_008798007.1| - 0.028 13.7 0.0 0.036 13.3 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized protein family UPF0054 Peptidase_M10 PF00413.19 gi|557694953|ref|YP_008798007.1| - 0.13 12.0 0.1 0.27 10.9 0.1 1.4 1 1 0 1 1 1 0 Matrixin DUF1025 PF06262.6 gi|557694953|ref|YP_008798007.1| - 0.13 12.0 0.0 0.27 11.0 0.0 1.6 1 0 0 1 1 1 0 Possibl zinc metallo-peptidase Fer4 PF00037.22 gi|557694954|ref|YP_008798008.1| - 9.9e-13 47.1 14.2 1.3e-06 27.7 1.9 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|557694954|ref|YP_008798008.1| - 3.3e-10 40.1 27.0 2.6e-06 27.7 6.8 2.1 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|557694954|ref|YP_008798008.1| - 2.7e-09 37.1 4.1 8.3e-09 35.5 2.8 1.8 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|557694954|ref|YP_008798008.1| - 6e-08 32.6 9.8 2.4e-06 27.4 3.4 1.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|557694954|ref|YP_008798008.1| - 7.7e-08 32.0 5.1 1.9e-07 30.7 3.6 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|557694954|ref|YP_008798008.1| - 1.3e-06 28.0 14.5 0.0031 17.3 3.1 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|557694954|ref|YP_008798008.1| - 2.6e-06 27.1 4.2 0.0051 16.6 0.4 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|557694954|ref|YP_008798008.1| - 2e-05 24.5 7.3 0.029 14.7 1.9 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|557694954|ref|YP_008798008.1| - 2.7e-05 23.8 10.4 0.01 15.7 1.1 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|557694954|ref|YP_008798008.1| - 3.9e-05 24.3 7.0 0.11 13.3 2.8 2.3 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_18 PF13746.1 gi|557694954|ref|YP_008798008.1| - 6.6e-05 23.2 4.4 0.0092 16.3 0.1 2.3 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|557694954|ref|YP_008798008.1| - 0.00016 21.9 13.1 0.017 15.6 3.0 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.1 gi|557694954|ref|YP_008798008.1| - 0.00016 21.9 4.8 0.0011 19.2 3.8 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|557694954|ref|YP_008798008.1| - 0.0019 18.7 11.5 0.0087 16.6 0.2 2.8 2 1 0 2 2 2 1 4Fe-4S single cluster domain Fer4_13 PF13370.1 gi|557694954|ref|YP_008798008.1| - 0.013 15.8 12.1 0.044 14.1 0.2 2.7 2 1 0 2 2 2 0 4Fe-4S single cluster domain B3_4 PF03483.12 gi|557694955|ref|YP_008798009.1| - 2.4e-26 92.2 0.0 3.8e-26 91.6 0.0 1.3 1 0 0 1 1 1 1 B3/4 domain CBS PF00571.23 gi|557694956|ref|YP_008798010.1| - 3.4e-36 122.7 0.2 3.3e-17 61.9 0.0 2.1 2 0 0 2 2 2 2 CBS domain IF3_N PF05198.11 gi|557694956|ref|YP_008798010.1| - 0.095 12.6 0.0 5.9 6.8 0.0 2.4 2 0 0 2 2 2 0 Translation initiation factor IF-3, N-terminal domain AFOR_C PF01314.13 gi|557694957|ref|YP_008798011.1| - 4.7e-69 232.9 0.1 6.2e-69 232.5 0.0 1.1 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.10 gi|557694957|ref|YP_008798011.1| - 1.1e-48 165.3 0.2 1.9e-48 164.5 0.1 1.4 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain Aldo_ket_red PF00248.16 gi|557694958|ref|YP_008798012.1| - 1.2e-73 247.4 0.0 1.4e-73 247.1 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family RHH_1 PF01402.16 gi|557694958|ref|YP_008798012.1| - 0.082 12.8 0.0 15 5.6 0.0 2.6 2 0 0 2 2 2 0 Ribbon-helix-helix protein, copG family DZR PF12773.2 gi|557694959|ref|YP_008798013.1| - 2.8e-07 30.2 2.5 5.5e-07 29.3 1.8 1.5 1 1 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|557694959|ref|YP_008798013.1| - 0.00089 18.6 1.0 0.00089 18.6 0.7 2.6 3 0 0 3 3 3 1 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|557694959|ref|YP_008798013.1| - 0.0016 17.5 1.3 0.0016 17.5 0.9 3.0 3 0 0 3 3 3 1 zinc-ribbon domain zf-RanBP PF00641.13 gi|557694959|ref|YP_008798013.1| - 0.019 14.0 1.8 0.019 14.0 1.3 2.4 2 0 0 2 2 2 0 Zn-finger in Ran binding protein and others zf-C3HC4_3 PF13920.1 gi|557694959|ref|YP_008798013.1| - 0.04 13.5 6.0 0.75 9.5 0.1 2.8 2 1 1 3 3 3 0 Zinc finger, C3HC4 type (RING finger) DUF1358 PF07096.6 gi|557694959|ref|YP_008798013.1| - 0.077 12.6 0.5 0.16 11.6 0.1 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF1358) Zn_Tnp_IS1595 PF12760.2 gi|557694959|ref|YP_008798013.1| - 0.51 10.1 5.1 3.6 7.4 0.4 2.5 2 0 0 2 2 2 0 Transposase zinc-ribbon domain zinc-ribbons_6 PF07191.7 gi|557694959|ref|YP_008798013.1| - 0.73 9.6 4.8 4.7 7.0 3.4 2.0 1 1 1 2 2 2 0 zinc-ribbons zf-LITAF-like PF10601.4 gi|557694959|ref|YP_008798013.1| - 0.91 9.4 6.0 1.3 8.9 1.5 2.5 2 0 0 2 2 2 0 LITAF-like zinc ribbon domain FYVE PF01363.16 gi|557694959|ref|YP_008798013.1| - 1.5 8.8 5.2 4.2 7.3 0.1 2.2 1 1 1 2 2 2 0 FYVE zinc finger zf-DHHC PF01529.15 gi|557694959|ref|YP_008798013.1| - 1.8 7.9 8.8 0.37 10.1 0.3 2.5 1 1 1 2 2 2 0 DHHC palmitoyltransferase DUF2256 PF10013.4 gi|557694959|ref|YP_008798013.1| - 2 8.2 0.0 2 8.2 0.0 3.1 2 2 2 4 4 4 0 Uncharacterized protein conserved in bacteria (DUF2256) Mu-like_Com PF10122.4 gi|557694959|ref|YP_008798013.1| - 4.3 6.4 6.6 3.6 6.7 0.7 2.6 1 1 1 2 2 2 0 Mu-like prophage protein Com DNA_RNApol_7kD PF03604.8 gi|557694959|ref|YP_008798013.1| - 9.2 5.8 9.4 4.7 6.7 0.1 2.7 2 1 1 3 3 3 0 DNA directed RNA polymerase, 7 kDa subunit DUF3855 PF12967.2 gi|557694961|ref|YP_008798015.1| - 0.029 13.9 0.0 0.033 13.7 0.0 1.2 1 0 0 1 1 1 0 Domain of Unknown Function with PDB structure (DUF3855) DUF4364 PF14277.1 gi|557694962|ref|YP_008798016.1| - 0.0094 15.5 0.7 0.51 9.9 0.1 2.1 1 1 1 2 2 2 2 Domain of unknown function (DUF4364) Vip3A_N PF12495.3 gi|557694962|ref|YP_008798016.1| - 0.055 13.1 0.2 0.077 12.6 0.1 1.3 1 0 0 1 1 1 0 Vegetative insecticide protein 3A N terminal HTH_20 PF12840.2 gi|557694962|ref|YP_008798016.1| - 0.062 13.1 0.1 0.11 12.2 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain Chordopox_L2 PF05803.7 gi|557694962|ref|YP_008798016.1| - 0.27 10.8 1.9 0.3 10.7 0.2 1.9 2 1 1 3 3 3 0 Chordopoxvirus L2 protein HSP20 PF00011.16 gi|557694963|ref|YP_008798017.1| - 6.8e-13 48.3 0.0 1.1e-12 47.6 0.0 1.4 1 0 0 1 1 1 1 Hsp20/alpha crystallin family PIH1 PF08190.7 gi|557694963|ref|YP_008798017.1| - 5.1e-05 22.8 0.0 6.6e-05 22.5 0.0 1.1 1 0 0 1 1 1 1 pre-RNA processing PIH1/Nop17 PAC2 PF09754.4 gi|557694964|ref|YP_008798018.1| - 7.5e-32 110.9 0.0 9e-32 110.7 0.0 1.0 1 0 0 1 1 1 1 PAC2 family AMP-binding PF00501.23 gi|557694965|ref|YP_008798019.1| - 6.1e-94 314.7 0.0 7.9e-94 314.4 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|557694965|ref|YP_008798019.1| - 1.5e-22 80.3 0.1 1.5e-22 80.3 0.1 1.9 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain 5-FTHF_cyc-lig PF01812.15 gi|557694966|ref|YP_008798020.1| - 1.7e-30 106.2 0.0 2e-30 105.9 0.0 1.1 1 0 0 1 1 1 1 5-formyltetrahydrofolate cyclo-ligase family bact-PGI_C PF10432.4 gi|557694967|ref|YP_008798021.1| - 1e-27 96.7 0.0 1.6e-27 96.0 0.0 1.3 1 0 0 1 1 1 1 Bacterial phospho-glucose isomerase C-terminal region SIS PF01380.17 gi|557694967|ref|YP_008798021.1| - 0.00039 20.0 0.2 1.1 8.8 0.0 3.1 2 2 0 2 2 2 2 SIS domain MoCF_biosynth PF00994.19 gi|557694968|ref|YP_008798022.1| - 1.1e-34 118.8 0.0 1.7e-34 118.2 0.0 1.3 1 0 0 1 1 1 1 Probable molybdopterin binding domain Paf67 PF10255.4 gi|557694968|ref|YP_008798022.1| - 0.059 12.2 0.1 0.078 11.8 0.1 1.1 1 0 0 1 1 1 0 RNA polymerase I-associated factor PAF67 Metallophos_2 PF12850.2 gi|557694969|ref|YP_008798023.1| - 1.5e-17 63.8 0.0 2e-17 63.4 0.0 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos_3 PF14582.1 gi|557694969|ref|YP_008798023.1| - 1.6e-16 60.2 0.1 2.3e-13 49.9 0.0 2.2 1 1 1 2 2 2 2 Metallophosphoesterase, calcineurin superfamily Metallophos PF00149.23 gi|557694969|ref|YP_008798023.1| - 1.1e-10 41.2 0.0 1.7e-10 40.6 0.0 1.3 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase CBS PF00571.23 gi|557694970|ref|YP_008798024.1| - 4.8e-27 93.4 6.7 5.6e-14 51.6 0.7 2.2 2 0 0 2 2 2 2 CBS domain Prok-RING_1 PF14446.1 gi|557694970|ref|YP_008798024.1| - 0.002 17.8 5.6 0.0067 16.1 3.9 1.8 1 1 0 1 1 1 1 Prokaryotic RING finger family 1 zf-BED PF02892.10 gi|557694970|ref|YP_008798024.1| - 0.092 12.5 3.7 3.3 7.5 0.7 2.3 2 0 0 2 2 2 0 BED zinc finger zinc_ribbon_2 PF13240.1 gi|557694970|ref|YP_008798024.1| - 0.13 11.8 4.7 1.3 8.6 0.1 2.5 2 1 0 2 2 2 0 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|557694970|ref|YP_008798024.1| - 0.26 10.5 3.1 1.9 7.8 0.0 2.7 2 1 1 3 3 3 0 zinc-ribbon domain Ribosomal_S27e PF01667.12 gi|557694970|ref|YP_008798024.1| - 3.7 7.1 6.6 2 7.9 2.1 2.3 2 1 1 3 3 3 0 Ribosomal protein S27 2-Hacid_dh_C PF02826.14 gi|557694971|ref|YP_008798025.1| - 7.4e-41 139.2 0.0 1.1e-40 138.7 0.0 1.2 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.25 gi|557694971|ref|YP_008798025.1| - 6.8e-13 48.2 0.0 8.5e-13 47.9 0.0 1.1 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AdoHcyase_NAD PF00670.16 gi|557694971|ref|YP_008798025.1| - 4.2e-06 26.7 0.1 9.2e-06 25.5 0.1 1.5 1 1 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain IlvN PF07991.7 gi|557694971|ref|YP_008798025.1| - 3.4e-05 23.2 0.0 0.00016 21.0 0.0 2.1 2 1 0 2 2 2 1 Acetohydroxy acid isomeroreductase, catalytic domain NAD_binding_2 PF03446.10 gi|557694971|ref|YP_008798025.1| - 0.0023 17.8 0.0 0.0045 16.8 0.0 1.5 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase Pyr_redox PF00070.22 gi|557694971|ref|YP_008798025.1| - 0.01 16.1 0.2 0.022 15.1 0.1 1.6 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Shikimate_DH PF01488.15 gi|557694971|ref|YP_008798025.1| - 0.015 15.4 0.3 0.16 12.0 0.2 2.4 1 1 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase NAD_binding_7 PF13241.1 gi|557694971|ref|YP_008798025.1| - 0.027 14.7 0.2 0.084 13.1 0.0 1.9 2 0 0 2 2 2 0 Putative NAD(P)-binding F420_oxidored PF03807.12 gi|557694971|ref|YP_008798025.1| - 0.038 14.4 0.6 0.54 10.7 0.0 2.6 2 1 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent Pyr_redox_2 PF07992.9 gi|557694971|ref|YP_008798025.1| - 0.099 12.5 0.0 0.18 11.6 0.0 1.5 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase CPSase_L_chain PF00289.17 gi|557694971|ref|YP_008798025.1| - 0.14 12.2 0.2 0.4 10.8 0.1 1.8 1 0 0 1 1 1 0 Carbamoyl-phosphate synthase L chain, N-terminal domain TrkA_N PF02254.13 gi|557694971|ref|YP_008798025.1| - 0.28 11.1 1.8 1.1 9.3 0.6 2.5 2 1 0 2 2 2 0 TrkA-N domain HxlR PF01638.12 gi|557694972|ref|YP_008798026.1| - 7.2e-25 86.4 0.1 8.4e-25 86.2 0.1 1.1 1 0 0 1 1 1 1 HxlR-like helix-turn-helix HTH_5 PF01022.15 gi|557694972|ref|YP_008798026.1| - 0.00073 19.1 0.0 0.0019 17.8 0.0 1.7 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family MarR PF01047.17 gi|557694972|ref|YP_008798026.1| - 0.003 17.2 0.0 0.0067 16.1 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.2 gi|557694972|ref|YP_008798026.1| - 0.0031 17.2 0.0 0.0061 16.3 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|557694972|ref|YP_008798026.1| - 0.019 14.5 0.0 0.036 13.7 0.0 1.4 1 0 0 1 1 1 0 MarR family Crp PF00325.15 gi|557694972|ref|YP_008798026.1| - 0.028 13.8 0.2 0.046 13.1 0.2 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, crp family HTH_24 PF13412.1 gi|557694972|ref|YP_008798026.1| - 0.044 13.1 0.2 0.087 12.2 0.1 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding TrmB PF01978.14 gi|557694972|ref|YP_008798026.1| - 0.046 13.4 0.0 0.066 12.9 0.0 1.2 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_36 PF13730.1 gi|557694972|ref|YP_008798026.1| - 0.096 12.8 0.1 0.17 12.0 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain DoxX PF07681.7 gi|557694973|ref|YP_008798027.1| - 1.6e-14 54.0 10.4 1.6e-14 54.0 7.2 2.2 1 1 1 2 2 2 1 DoxX DoxX_2 PF13564.1 gi|557694973|ref|YP_008798027.1| - 3.9e-10 39.6 5.1 3.9e-10 39.6 3.5 2.6 1 1 1 2 2 2 1 DoxX-like family DoxD PF04173.8 gi|557694973|ref|YP_008798027.1| - 0.008 15.8 11.5 0.018 14.7 0.1 2.6 2 1 0 3 3 3 2 TQO small subunit DoxD FxsA PF04186.8 gi|557694973|ref|YP_008798027.1| - 0.011 15.3 10.6 0.011 15.3 7.3 2.1 1 1 1 2 2 2 0 FxsA cytoplasmic membrane protein Fe_dep_repress PF01325.14 gi|557694974|ref|YP_008798028.1| - 8.9e-16 57.5 1.2 2.6e-15 56.0 0.2 2.2 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain Fe_dep_repr_C PF02742.10 gi|557694974|ref|YP_008798028.1| - 1.7e-09 37.1 2.8 1.9e-09 37.0 0.9 1.8 2 0 0 2 2 1 1 Iron dependent repressor, metal binding and dimerisation domain HTH_27 PF13463.1 gi|557694974|ref|YP_008798028.1| - 3.1e-08 33.8 0.0 8.6e-08 32.4 0.0 1.8 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR_2 PF12802.2 gi|557694974|ref|YP_008798028.1| - 7.5e-07 28.7 0.1 3.5e-06 26.5 0.1 2.2 1 1 1 2 2 2 1 MarR family HTH_24 PF13412.1 gi|557694974|ref|YP_008798028.1| - 1.5e-06 27.4 0.0 4.1e-06 26.0 0.0 1.8 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Penicillinase_R PF03965.11 gi|557694974|ref|YP_008798028.1| - 0.0002 21.4 0.2 0.00052 20.0 0.1 1.9 1 1 0 1 1 1 1 Penicillinase repressor HTH_45 PF14947.1 gi|557694974|ref|YP_008798028.1| - 0.00028 20.6 0.0 0.00046 19.9 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix TrmB PF01978.14 gi|557694974|ref|YP_008798028.1| - 0.00045 19.8 0.9 0.0021 17.7 0.1 2.6 2 1 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_23 PF13384.1 gi|557694974|ref|YP_008798028.1| - 0.00055 19.4 0.0 0.0016 18.0 0.0 1.8 1 0 0 1 1 1 1 Homeodomain-like domain MarR PF01047.17 gi|557694974|ref|YP_008798028.1| - 0.00089 18.9 0.0 0.003 17.2 0.0 1.9 2 0 0 2 2 1 1 MarR family HTH_IclR PF09339.5 gi|557694974|ref|YP_008798028.1| - 0.0015 18.0 2.3 0.0029 17.1 0.0 2.8 5 0 0 5 5 1 1 IclR helix-turn-helix domain HTH_29 PF13551.1 gi|557694974|ref|YP_008798028.1| - 0.0035 17.4 1.5 0.13 12.4 0.1 2.6 1 1 1 2 2 2 2 Winged helix-turn helix Topoisom_bac PF01131.15 gi|557694974|ref|YP_008798028.1| - 0.0038 16.1 0.0 0.0055 15.5 0.0 1.2 1 0 0 1 1 1 1 DNA topoisomerase Exo70 PF03081.10 gi|557694974|ref|YP_008798028.1| - 0.0081 14.9 0.2 0.012 14.4 0.2 1.3 1 1 0 1 1 1 1 Exo70 exocyst complex subunit Rrf2 PF02082.15 gi|557694974|ref|YP_008798028.1| - 0.0099 15.9 0.2 0.067 13.3 0.0 2.3 2 1 1 3 3 2 1 Transcriptional regulator PAX PF00292.13 gi|557694974|ref|YP_008798028.1| - 0.011 15.4 0.1 0.11 12.1 0.0 2.0 1 1 1 2 2 2 0 'Paired box' domain Cullin_Nedd8 PF10557.4 gi|557694974|ref|YP_008798028.1| - 0.014 15.2 0.0 0.081 12.7 0.0 2.3 2 0 0 2 2 2 0 Cullin protein neddylation domain HTH_7 PF02796.10 gi|557694974|ref|YP_008798028.1| - 0.015 15.1 0.1 0.11 12.3 0.0 2.4 2 0 0 2 2 2 0 Helix-turn-helix domain of resolvase DUF2042 PF09743.4 gi|557694974|ref|YP_008798028.1| - 0.02 14.2 0.1 0.069 12.4 0.1 1.9 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2042) HTH_AsnC-type PF13404.1 gi|557694974|ref|YP_008798028.1| - 0.025 14.1 1.3 0.042 13.3 0.0 2.1 2 0 0 2 2 1 0 AsnC-type helix-turn-helix domain Sigma54_DBD PF04552.8 gi|557694974|ref|YP_008798028.1| - 0.026 14.0 0.3 0.094 12.2 0.2 2.0 1 1 0 1 1 1 0 Sigma-54, DNA binding domain LexA_DNA_bind PF01726.11 gi|557694974|ref|YP_008798028.1| - 0.03 13.8 0.0 0.12 11.9 0.0 1.9 2 0 0 2 2 2 0 LexA DNA binding domain Phage_terminase PF10668.4 gi|557694974|ref|YP_008798028.1| - 0.032 14.0 0.0 0.061 13.1 0.0 1.4 1 0 0 1 1 1 0 Phage terminase small subunit HTH_28 PF13518.1 gi|557694974|ref|YP_008798028.1| - 0.037 14.0 0.1 0.32 11.0 0.0 2.5 3 0 0 3 3 2 0 Helix-turn-helix domain Arfaptin PF06456.8 gi|557694974|ref|YP_008798028.1| - 0.045 13.1 0.6 2 7.7 0.1 2.0 2 0 0 2 2 2 0 Arfaptin-like domain HTH_Crp_2 PF13545.1 gi|557694974|ref|YP_008798028.1| - 0.045 13.5 0.0 0.34 10.7 0.0 2.2 1 1 1 2 2 2 0 Crp-like helix-turn-helix domain GPP34 PF05719.6 gi|557694974|ref|YP_008798028.1| - 0.048 13.7 2.8 0.061 13.3 2.0 1.2 1 0 0 1 1 1 0 Golgi phosphoprotein 3 (GPP34) GntR PF00392.16 gi|557694974|ref|YP_008798028.1| - 0.054 12.9 0.9 0.46 9.9 0.0 2.9 3 1 0 3 3 3 0 Bacterial regulatory proteins, gntR family PINIT PF14324.1 gi|557694974|ref|YP_008798028.1| - 0.058 13.4 0.0 0.1 12.6 0.0 1.4 1 0 0 1 1 1 0 PINIT domain EAP30 PF04157.11 gi|557694974|ref|YP_008798028.1| - 0.061 12.4 0.2 0.67 9.0 0.0 2.1 2 0 0 2 2 2 0 EAP30/Vps36 family CtsR PF05848.6 gi|557694974|ref|YP_008798028.1| - 0.073 13.0 0.1 0.23 11.4 0.0 1.8 1 1 0 1 1 1 0 Firmicute transcriptional repressor of class III stress genes (CtsR) MIF4G_like_2 PF09090.6 gi|557694974|ref|YP_008798028.1| - 0.084 12.0 0.1 0.13 11.4 0.1 1.3 1 0 0 1 1 1 0 MIF4G like HTH_11 PF08279.7 gi|557694974|ref|YP_008798028.1| - 0.085 12.5 0.0 0.26 10.9 0.0 1.9 1 0 0 1 1 1 0 HTH domain FeoC PF09012.5 gi|557694974|ref|YP_008798028.1| - 0.13 12.0 0.0 0.78 9.4 0.0 2.2 2 0 0 2 2 2 0 FeoC like transcriptional regulator HTH_36 PF13730.1 gi|557694974|ref|YP_008798028.1| - 0.14 12.2 0.0 0.28 11.3 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_31 PF13560.1 gi|557694974|ref|YP_008798028.1| - 0.15 12.2 2.4 2.7 8.2 0.1 3.1 2 1 0 2 2 2 0 Helix-turn-helix domain HMGL-like PF00682.14 gi|557694975|ref|YP_008798029.1| - 5.2e-40 137.5 0.1 7.1e-40 137.1 0.0 1.2 1 0 0 1 1 1 1 HMGL-like Radical_SAM PF04055.16 gi|557694975|ref|YP_008798029.1| - 0.00088 19.4 0.5 1.8 8.7 0.0 2.9 3 1 1 4 4 4 2 Radical SAM superfamily AP_endonuc_2 PF01261.19 gi|557694975|ref|YP_008798029.1| - 0.01 15.1 0.2 0.021 14.1 0.1 1.7 1 1 0 1 1 1 0 Xylose isomerase-like TIM barrel CBS PF00571.23 gi|557694976|ref|YP_008798030.1| - 1.3e-33 114.4 12.8 3e-18 65.3 2.0 2.0 2 0 0 2 2 2 2 CBS domain Ribosomal_L44 PF00935.14 gi|557694977|ref|YP_008798031.1| - 6.9e-14 51.6 2.6 1.5e-13 50.5 1.8 1.5 1 0 0 1 1 1 1 Ribosomal protein L44 Ribosomal_L33 PF00471.15 gi|557694977|ref|YP_008798031.1| - 0.016 15.4 0.6 0.016 15.4 0.4 2.0 2 0 0 2 2 2 0 Ribosomal protein L33 Metallothi_Euk2 PF12809.2 gi|557694977|ref|YP_008798031.1| - 0.083 13.2 2.4 0.11 12.9 1.7 1.2 1 0 0 1 1 1 0 Eukaryotic metallothionein Ribosomal_S27e PF01667.12 gi|557694978|ref|YP_008798032.1| - 2.3e-18 65.4 1.0 2.6e-18 65.3 0.7 1.1 1 0 0 1 1 1 1 Ribosomal protein S27 TF_Zn_Ribbon PF08271.7 gi|557694978|ref|YP_008798032.1| - 0.00037 19.7 0.5 0.00052 19.2 0.4 1.3 1 0 0 1 1 1 1 TFIIB zinc-binding DUF3797 PF12677.2 gi|557694978|ref|YP_008798032.1| - 0.0069 15.9 1.2 0.0069 15.9 0.8 2.1 1 1 1 2 2 2 1 Domain of unknown function (DUF3797) Zn_Tnp_IS91 PF14319.1 gi|557694978|ref|YP_008798032.1| - 0.016 14.7 0.1 0.019 14.4 0.1 1.1 1 0 0 1 1 1 0 Transposase zinc-binding domain zf-ribbon_3 PF13248.1 gi|557694978|ref|YP_008798032.1| - 0.022 13.9 5.0 0.38 10.0 3.4 2.1 1 1 1 2 2 2 0 zinc-ribbon domain Rpr2 PF04032.11 gi|557694978|ref|YP_008798032.1| - 0.022 14.6 0.3 1.4 8.8 0.0 2.1 2 0 0 2 2 2 0 RNAse P Rpr2/Rpp21/SNM1 subunit domain zf-C2H2_3 PF13878.1 gi|557694978|ref|YP_008798032.1| - 0.022 14.3 0.3 1.1 8.8 0.1 2.1 2 0 0 2 2 2 0 zinc-finger of acetyl-transferase ESCO zf-C4_Topoisom PF01396.14 gi|557694978|ref|YP_008798032.1| - 0.027 13.9 0.6 1.5 8.3 0.0 2.2 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger HypA PF01155.14 gi|557694978|ref|YP_008798032.1| - 0.029 14.0 0.2 0.033 13.8 0.1 1.1 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family RRN7 PF11781.3 gi|557694978|ref|YP_008798032.1| - 0.034 13.6 1.8 1.3 8.5 0.0 2.1 1 1 0 2 2 2 0 RNA polymerase I-specific transcription initiation factor Rrn7 Lar_restr_allev PF14354.1 gi|557694978|ref|YP_008798032.1| - 0.046 14.0 0.9 0.17 12.2 0.7 1.8 1 1 1 2 2 2 0 Restriction alleviation protein Lar zf-BED PF02892.10 gi|557694978|ref|YP_008798032.1| - 0.047 13.4 0.1 2 8.2 0.0 2.2 2 0 0 2 2 2 0 BED zinc finger Desulfoferrod_N PF06397.7 gi|557694978|ref|YP_008798032.1| - 0.049 13.0 2.9 0.74 9.2 0.1 2.2 2 0 0 2 2 2 0 Desulfoferrodoxin, N-terminal domain DUF4206 PF13901.1 gi|557694978|ref|YP_008798032.1| - 0.065 12.7 0.2 0.072 12.6 0.1 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4206) OrfB_Zn_ribbon PF07282.6 gi|557694978|ref|YP_008798032.1| - 0.087 12.4 0.3 0.12 11.9 0.2 1.2 1 0 0 1 1 1 0 Putative transposase DNA-binding domain C1_1 PF00130.17 gi|557694978|ref|YP_008798032.1| - 0.089 12.5 0.5 0.12 12.1 0.4 1.2 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) zf-UDP PF14569.1 gi|557694978|ref|YP_008798032.1| - 0.093 12.4 0.7 0.11 12.2 0.5 1.1 1 0 0 1 1 1 0 Zinc-binding RING-finger Prok-RING_1 PF14446.1 gi|557694978|ref|YP_008798032.1| - 0.13 12.0 4.5 0.47 10.2 3.1 1.8 1 1 0 1 1 1 0 Prokaryotic RING finger family 1 eIF-5_eIF-2B PF01873.12 gi|557694978|ref|YP_008798032.1| - 0.14 11.8 1.0 0.18 11.4 0.7 1.1 1 0 0 1 1 1 0 Domain found in IF2B/IF5 zinc_ribbon_6 PF14599.1 gi|557694978|ref|YP_008798032.1| - 0.16 11.7 2.2 0.33 10.7 1.6 1.6 1 1 0 1 1 1 0 Zinc-ribbon DUF164 PF02591.10 gi|557694978|ref|YP_008798032.1| - 0.18 11.6 1.0 10 6.0 0.0 2.1 2 0 0 2 2 2 0 Putative zinc ribbon domain TFIIS_C PF01096.13 gi|557694978|ref|YP_008798032.1| - 0.2 11.3 3.7 1.4 8.6 0.2 2.1 1 1 2 3 3 3 0 Transcription factor S-II (TFIIS) ZZ PF00569.12 gi|557694978|ref|YP_008798032.1| - 0.21 11.1 5.6 1.9 8.0 0.4 2.1 1 1 1 2 2 2 0 Zinc finger, ZZ type A2L_zn_ribbon PF08792.5 gi|557694978|ref|YP_008798032.1| - 0.52 9.8 6.0 1.9 8.0 4.1 1.7 1 1 0 1 1 1 0 A2L zinc ribbon domain RecR PF02132.10 gi|557694978|ref|YP_008798032.1| - 0.55 9.7 2.9 13 5.3 0.1 2.1 2 0 0 2 2 2 0 RecR protein zf-DNL PF05180.7 gi|557694978|ref|YP_008798032.1| - 0.61 9.8 3.1 1.3 8.8 0.2 2.0 1 1 1 2 2 2 0 DNL zinc finger DNA_RNApol_7kD PF03604.8 gi|557694978|ref|YP_008798032.1| - 0.64 9.5 5.6 4.2 6.9 0.3 2.1 1 1 1 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit zinc_ribbon_5 PF13719.1 gi|557694978|ref|YP_008798032.1| - 1.7 8.2 4.8 14 5.3 3.3 2.1 1 1 1 2 2 2 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|557694978|ref|YP_008798032.1| - 2.9 7.6 5.0 31 4.3 3.5 2.2 1 1 1 2 2 2 0 zinc-ribbon domain zf-RanBP PF00641.13 gi|557694978|ref|YP_008798032.1| - 5.5 6.1 5.8 7.1 5.8 0.4 2.2 2 0 0 2 2 2 0 Zn-finger in Ran binding protein and others S1 PF00575.18 gi|557694979|ref|YP_008798033.1| - 4.1e-15 55.6 0.2 8.8e-15 54.5 0.1 1.6 1 0 0 1 1 1 1 S1 RNA binding domain EIF_2_alpha PF07541.7 gi|557694979|ref|YP_008798033.1| - 3.3e-14 52.5 0.4 1.3e-13 50.6 0.1 2.0 2 1 0 2 2 2 1 Eukaryotic translation initiation factor 2 alpha subunit AAA_11 PF13086.1 gi|557694979|ref|YP_008798033.1| - 0.019 14.5 0.6 0.023 14.3 0.4 1.2 1 0 0 1 1 1 0 AAA domain DUF2267 PF10025.4 gi|557694979|ref|YP_008798033.1| - 0.1 12.6 0.4 0.1 12.6 0.3 2.0 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2267) HHA PF05321.6 gi|557694979|ref|YP_008798033.1| - 2.1 8.5 6.5 43 4.3 0.2 3.8 2 1 1 3 3 3 0 Haemolysin expression modulating protein TauE PF01925.14 gi|557694981|ref|YP_008798035.1| - 4.1e-33 114.8 37.6 4.9e-33 114.5 26.1 1.0 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE FxsA PF04186.8 gi|557694981|ref|YP_008798035.1| - 2.3 7.8 10.7 0.19 11.3 2.9 2.4 2 0 0 2 2 2 0 FxsA cytoplasmic membrane protein Peptidase_M50 PF02163.17 gi|557694982|ref|YP_008798036.1| - 3.1e-08 32.7 22.9 5.4e-08 32.0 12.9 3.0 1 1 1 2 2 2 1 Peptidase family M50 HSP20 PF00011.16 gi|557694983|ref|YP_008798037.1| - 3.9e-05 23.4 0.0 6.2e-05 22.7 0.0 1.3 1 1 0 1 1 1 1 Hsp20/alpha crystallin family DNA_ligase_A_M PF01068.16 gi|557694984|ref|YP_008798038.1| - 7.6e-48 162.5 0.0 1.7e-47 161.4 0.0 1.6 1 0 0 1 1 1 1 ATP dependent DNA ligase domain DNA_ligase_A_N PF04675.9 gi|557694984|ref|YP_008798038.1| - 4e-23 82.1 0.3 1.7e-14 54.0 0.1 2.3 1 1 1 2 2 2 2 DNA ligase N terminus DNA_ligase_A_C PF04679.10 gi|557694984|ref|YP_008798038.1| - 1.3e-13 51.1 0.1 4.9e-13 49.3 0.0 2.1 2 0 0 2 2 2 1 ATP dependent DNA ligase C terminal region HTH_15 PF12324.3 gi|557694984|ref|YP_008798038.1| - 0.0047 16.5 0.0 0.018 14.7 0.0 2.0 1 0 0 1 1 1 1 Helix-turn-helix domain of alkylmercury lyase mRNA_cap_enzyme PF01331.14 gi|557694984|ref|YP_008798038.1| - 0.024 14.3 0.0 0.19 11.4 0.0 2.2 1 1 1 2 2 2 0 mRNA capping enzyme, catalytic domain Got1 PF04178.7 gi|557694985|ref|YP_008798039.1| - 0.045 13.8 0.3 0.045 13.8 0.2 2.9 1 1 2 3 3 3 0 Got1/Sft2-like family ABC_cobalt PF09819.4 gi|557694985|ref|YP_008798039.1| - 0.44 10.5 5.6 0.47 10.4 2.7 1.8 1 1 0 1 1 1 0 ABC-type cobalt transport system, permease component tRNA_bind PF01588.15 gi|557694986|ref|YP_008798040.1| - 1.8e-22 78.9 0.0 2.2e-22 78.7 0.0 1.1 1 0 0 1 1 1 1 Putative tRNA binding domain tRNA-synt_2 PF00152.15 gi|557694987|ref|YP_008798041.1| - 9.6e-79 264.5 0.0 1.7e-78 263.7 0.0 1.3 1 1 0 1 1 1 1 tRNA synthetases class II (D, K and N) tRNA_anti-codon PF01336.20 gi|557694987|ref|YP_008798041.1| - 6.6e-13 48.3 0.1 1.7e-12 46.9 0.0 1.7 2 0 0 2 2 2 1 OB-fold nucleic acid binding domain tRNA-synt_2d PF01409.15 gi|557694987|ref|YP_008798041.1| - 0.0015 17.7 0.1 0.23 10.6 0.0 2.4 2 0 0 2 2 2 2 tRNA synthetases class II core domain (F) tRNA-synt_2b PF00587.20 gi|557694987|ref|YP_008798041.1| - 0.0024 17.4 0.0 1.6 8.3 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetase class II core domain (G, H, P, S and T) Methyltransf_26 PF13659.1 gi|557694988|ref|YP_008798042.1| - 9.3e-17 61.1 0.0 1.3e-16 60.6 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|557694988|ref|YP_008798042.1| - 1.5e-12 47.2 0.0 1.9e-12 46.8 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_11 PF08241.7 gi|557694988|ref|YP_008798042.1| - 5.3e-11 42.8 0.0 1.6e-10 41.3 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|557694988|ref|YP_008798042.1| - 8.4e-11 41.6 0.0 1.1e-10 41.3 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|557694988|ref|YP_008798042.1| - 2e-10 41.2 0.0 3.3e-10 40.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|557694988|ref|YP_008798042.1| - 3.8e-09 36.9 0.0 8.2e-09 35.8 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|557694988|ref|YP_008798042.1| - 4.1e-08 33.4 0.0 7.4e-08 32.6 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|557694988|ref|YP_008798042.1| - 6.2e-05 22.7 0.0 8e-05 22.4 0.0 1.3 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_4 PF02390.12 gi|557694988|ref|YP_008798042.1| - 8.7e-05 21.6 0.0 0.00015 20.8 0.0 1.4 1 0 0 1 1 1 1 Putative methyltransferase UPF0020 PF01170.13 gi|557694988|ref|YP_008798042.1| - 0.00047 19.7 0.0 0.00092 18.8 0.0 1.5 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 PrmA PF06325.8 gi|557694988|ref|YP_008798042.1| - 0.00047 19.3 0.0 0.00066 18.8 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) TPMT PF05724.6 gi|557694988|ref|YP_008798042.1| - 0.00069 19.1 0.0 0.001 18.5 0.0 1.2 1 0 0 1 1 1 1 Thiopurine S-methyltransferase (TPMT) UPF0146 PF03686.8 gi|557694988|ref|YP_008798042.1| - 0.0029 17.4 0.0 0.0048 16.7 0.0 1.3 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0146) Ubie_methyltran PF01209.13 gi|557694988|ref|YP_008798042.1| - 0.0078 15.3 0.0 0.0091 15.1 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family MetW PF07021.7 gi|557694988|ref|YP_008798042.1| - 0.022 14.1 0.0 0.028 13.7 0.0 1.2 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW Methyltransf_5 PF01795.14 gi|557694988|ref|YP_008798042.1| - 0.032 13.4 0.0 0.053 12.7 0.0 1.3 1 0 0 1 1 1 0 MraW methylase family NodS PF05401.6 gi|557694988|ref|YP_008798042.1| - 0.036 13.4 0.0 0.058 12.7 0.0 1.3 1 0 0 1 1 1 0 Nodulation protein S (NodS) N6_N4_Mtase PF01555.13 gi|557694988|ref|YP_008798042.1| - 0.08 12.4 0.2 0.28 10.6 0.0 1.9 2 1 0 2 2 2 0 DNA methylase N6_Mtase PF02384.11 gi|557694988|ref|YP_008798042.1| - 0.16 11.0 0.0 0.55 9.2 0.0 1.8 1 1 0 1 1 1 0 N-6 DNA Methylase AA_permease_2 PF13520.1 gi|557694989|ref|YP_008798043.1| - 1.5e-34 119.2 41.5 1.5e-34 119.2 28.8 1.5 1 1 1 2 2 2 1 Amino acid permease AA_permease PF00324.16 gi|557694989|ref|YP_008798043.1| - 5.7e-25 87.5 38.2 5.7e-25 87.5 26.5 1.8 1 1 0 2 2 2 1 Amino acid permease AsnC_trans_reg PF01037.16 gi|557694990|ref|YP_008798044.1| - 4.3e-19 68.0 0.7 4.9e-19 67.8 0.5 1.1 1 0 0 1 1 1 1 AsnC family MoeA_N PF03453.12 gi|557694991|ref|YP_008798045.1| - 2.1e-42 144.2 0.0 3.1e-42 143.6 0.0 1.3 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.19 gi|557694991|ref|YP_008798045.1| - 3.2e-16 59.0 0.0 5e-16 58.3 0.0 1.3 1 0 0 1 1 1 1 Probable molybdopterin binding domain MoeA_C PF03454.10 gi|557694991|ref|YP_008798045.1| - 4.4e-05 23.3 0.0 0.00027 20.8 0.0 2.3 3 0 0 3 3 3 1 MoeA C-terminal region (domain IV) XdhC_C PF13478.1 gi|557694992|ref|YP_008798046.1| - 1.2e-32 113.0 0.0 1.6e-32 112.6 0.0 1.2 1 0 0 1 1 1 1 XdhC Rossmann domain XdhC_CoxI PF02625.11 gi|557694992|ref|YP_008798046.1| - 2.7e-18 65.3 0.1 4.8e-18 64.5 0.1 1.4 1 0 0 1 1 1 1 XdhC and CoxI family OTCace PF00185.19 gi|557694992|ref|YP_008798046.1| - 0.025 14.4 0.0 0.046 13.5 0.0 1.5 1 0 0 1 1 1 0 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain 2-Hacid_dh_C PF02826.14 gi|557694992|ref|YP_008798046.1| - 0.055 12.6 0.0 0.096 11.8 0.0 1.4 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VWA_CoxE PF05762.9 gi|557694993|ref|YP_008798047.1| - 1.2e-48 165.1 0.1 1.7e-48 164.6 0.0 1.1 1 0 0 1 1 1 1 VWA domain containing CoxE-like protein VWA_2 PF13519.1 gi|557694993|ref|YP_008798047.1| - 1.1e-06 28.8 0.0 1.7e-06 28.2 0.0 1.3 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA PF00092.23 gi|557694993|ref|YP_008798047.1| - 0.0011 18.7 0.0 0.0018 18.0 0.0 1.2 1 0 0 1 1 1 1 von Willebrand factor type A domain NAD_binding_6 PF08030.7 gi|557694993|ref|YP_008798047.1| - 0.051 13.4 0.0 3.5 7.4 0.0 2.2 2 0 0 2 2 2 0 Ferric reductase NAD binding domain AAA_5 PF07728.9 gi|557694994|ref|YP_008798048.1| - 2.3e-13 50.0 0.0 4.3e-13 49.1 0.0 1.5 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA PF00004.24 gi|557694994|ref|YP_008798048.1| - 1.3e-10 41.5 0.0 3.4e-10 40.2 0.0 1.7 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_3 PF07726.6 gi|557694994|ref|YP_008798048.1| - 2.2e-09 37.0 0.0 0.00092 18.8 0.0 2.3 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_18 PF13238.1 gi|557694994|ref|YP_008798048.1| - 2.1e-06 28.0 0.0 6.9e-05 23.1 0.0 2.8 2 1 0 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|557694994|ref|YP_008798048.1| - 7.9e-06 26.0 0.0 3.4e-05 24.0 0.0 2.1 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|557694994|ref|YP_008798048.1| - 1.5e-05 25.0 0.2 0.00021 21.3 0.1 2.5 2 1 0 2 2 1 1 AAA ATPase domain RuvB_N PF05496.7 gi|557694994|ref|YP_008798048.1| - 7.2e-05 21.9 0.1 0.12 11.4 0.0 2.3 2 0 0 2 2 2 2 Holliday junction DNA helicase ruvB N-terminus AAA_19 PF13245.1 gi|557694994|ref|YP_008798048.1| - 0.00036 20.2 0.0 0.001 18.7 0.0 1.8 2 0 0 2 2 2 1 Part of AAA domain Sigma54_activ_2 PF14532.1 gi|557694994|ref|YP_008798048.1| - 0.00038 20.5 0.0 0.0046 17.0 0.0 2.4 2 0 0 2 2 2 1 Sigma-54 interaction domain AAA_17 PF13207.1 gi|557694994|ref|YP_008798048.1| - 0.00041 21.1 0.0 0.00084 20.1 0.0 1.7 1 1 0 1 1 1 1 AAA domain Sigma54_activat PF00158.21 gi|557694994|ref|YP_008798048.1| - 0.00073 19.0 0.0 0.2 11.1 0.0 2.2 2 0 0 2 2 2 1 Sigma-54 interaction domain AAA_14 PF13173.1 gi|557694994|ref|YP_008798048.1| - 0.0018 18.1 0.1 0.0098 15.7 0.1 2.0 1 1 0 1 1 1 1 AAA domain RNA_helicase PF00910.17 gi|557694994|ref|YP_008798048.1| - 0.0018 18.4 0.0 0.018 15.1 0.0 2.1 1 1 0 1 1 1 1 RNA helicase NACHT PF05729.7 gi|557694994|ref|YP_008798048.1| - 0.0066 16.1 0.3 0.028 14.0 0.2 2.0 1 1 0 1 1 1 1 NACHT domain ABC_tran PF00005.22 gi|557694994|ref|YP_008798048.1| - 0.011 16.0 0.1 0.038 14.2 0.0 2.4 2 1 0 2 2 1 0 ABC transporter AAA_2 PF07724.9 gi|557694994|ref|YP_008798048.1| - 0.012 15.5 0.0 0.042 13.7 0.0 1.8 1 1 0 1 1 1 0 AAA domain (Cdc48 subfamily) Rad17 PF03215.10 gi|557694994|ref|YP_008798048.1| - 0.014 14.0 0.1 0.025 13.2 0.0 1.3 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein Mg_chelatase PF01078.16 gi|557694994|ref|YP_008798048.1| - 0.024 13.7 0.0 0.044 12.9 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI Zeta_toxin PF06414.7 gi|557694994|ref|YP_008798048.1| - 0.096 11.7 0.0 0.18 10.9 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin KTI12 PF08433.5 gi|557694994|ref|YP_008798048.1| - 0.1 11.8 0.1 1.5 7.9 0.0 2.2 1 1 1 2 2 2 0 Chromatin associated protein KTI12 NTPase_1 PF03266.10 gi|557694994|ref|YP_008798048.1| - 0.1 12.3 0.1 2 8.1 0.0 2.2 2 0 0 2 2 2 0 NTPase HHH_3 PF12836.2 gi|557694994|ref|YP_008798048.1| - 0.13 12.2 0.1 0.36 10.7 0.0 1.7 1 0 0 1 1 1 0 Helix-hairpin-helix motif FAD_binding_5 PF00941.16 gi|557694995|ref|YP_008798049.1| - 1.5e-46 157.9 0.0 2.5e-46 157.2 0.0 1.4 1 0 0 1 1 1 1 FAD binding domain in molybdopterin dehydrogenase CO_deh_flav_C PF03450.12 gi|557694995|ref|YP_008798049.1| - 7.4e-28 96.5 2.4 8.2e-28 96.3 0.8 1.8 2 0 0 2 2 2 1 CO dehydrogenase flavoprotein C-terminal domain FAD_binding_4 PF01565.18 gi|557694995|ref|YP_008798049.1| - 0.057 12.8 0.0 0.11 12.0 0.0 1.3 1 0 0 1 1 1 0 FAD binding domain Fer2_2 PF01799.15 gi|557694996|ref|YP_008798050.1| - 6.2e-34 115.7 0.6 2.3e-33 113.9 0.0 1.9 2 0 0 2 2 2 1 [2Fe-2S] binding domain Fer2 PF00111.22 gi|557694996|ref|YP_008798050.1| - 0.00012 21.7 0.1 0.00012 21.7 0.1 2.1 2 1 0 2 2 2 1 2Fe-2S iron-sulfur cluster binding domain COXG PF06240.8 gi|557694997|ref|YP_008798051.1| - 2.9e-32 111.2 0.1 3.3e-32 111.0 0.1 1.0 1 0 0 1 1 1 1 Carbon monoxide dehydrogenase subunit G (CoxG) Polyketide_cyc2 PF10604.4 gi|557694997|ref|YP_008798051.1| - 7.5e-11 42.3 0.0 8.6e-11 42.1 0.0 1.0 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport AHSA1 PF08327.6 gi|557694997|ref|YP_008798051.1| - 8.3e-05 22.6 0.0 0.00011 22.2 0.0 1.3 1 0 0 1 1 1 1 Activator of Hsp90 ATPase homolog 1-like protein Polyketide_cyc PF03364.15 gi|557694997|ref|YP_008798051.1| - 0.0012 18.7 0.0 0.0018 18.2 0.0 1.5 1 1 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport GTP_EFTU PF00009.22 gi|557694998|ref|YP_008798052.1| - 8.7e-55 185.0 0.0 1.3e-54 184.5 0.0 1.3 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain EFG_IV PF03764.13 gi|557694998|ref|YP_008798052.1| - 2.2e-27 95.0 0.1 7.5e-27 93.2 0.0 2.0 2 0 0 2 2 2 1 Elongation factor G, domain IV EFG_C PF00679.19 gi|557694998|ref|YP_008798052.1| - 2.8e-21 75.1 0.0 7.6e-21 73.7 0.0 1.8 1 0 0 1 1 1 1 Elongation factor G C-terminus EFG_II PF14492.1 gi|557694998|ref|YP_008798052.1| - 1.9e-20 72.4 0.0 1.2e-19 69.9 0.0 2.3 3 0 0 3 3 3 1 Elongation Factor G, domain II GTP_EFTU_D2 PF03144.20 gi|557694998|ref|YP_008798052.1| - 1.2e-12 47.7 2.6 3.3e-12 46.3 1.8 1.8 1 0 0 1 1 1 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.18 gi|557694998|ref|YP_008798052.1| - 0.00015 21.6 0.1 0.00065 19.6 0.0 2.0 2 0 0 2 2 2 1 50S ribosome-binding GTPase Ras PF00071.17 gi|557694998|ref|YP_008798052.1| - 0.027 13.8 0.0 0.052 12.9 0.0 1.4 1 0 0 1 1 1 0 Ras family IncA PF04156.9 gi|557694999|ref|YP_008798053.1| - 0.0024 17.4 13.3 0.0024 17.4 9.2 2.6 2 1 0 2 2 2 1 IncA protein DUF948 PF06103.6 gi|557694999|ref|YP_008798053.1| - 0.011 15.6 4.5 0.14 11.9 0.2 3.0 2 1 0 2 2 2 0 Bacterial protein of unknown function (DUF948) TPR_MLP1_2 PF07926.7 gi|557694999|ref|YP_008798053.1| - 0.018 14.7 42.9 0.043 13.5 14.9 3.3 1 1 1 2 2 2 0 TPR/MLP1/MLP2-like protein Bacillus_HBL PF05791.6 gi|557694999|ref|YP_008798053.1| - 0.027 13.8 11.2 0.05 12.9 1.7 2.6 2 0 0 2 2 2 0 Bacillus haemolytic enterotoxin (HBL) Lectin_N PF03954.9 gi|557694999|ref|YP_008798053.1| - 0.031 13.6 0.5 0.15 11.4 0.0 2.2 1 1 1 2 2 2 0 Hepatic lectin, N-terminal domain Reo_sigmaC PF04582.7 gi|557694999|ref|YP_008798053.1| - 0.091 11.9 0.9 4.2 6.4 0.1 2.1 1 1 0 2 2 2 0 Reovirus sigma C capsid protein UPF0075 PF03702.9 gi|557694999|ref|YP_008798053.1| - 0.1 11.4 2.1 0.13 11.1 0.3 1.9 1 1 1 2 2 2 0 Uncharacterised protein family (UPF0075) Laminin_II PF06009.7 gi|557694999|ref|YP_008798053.1| - 0.12 12.1 22.0 1.4 8.6 4.0 3.5 1 1 2 3 3 3 0 Laminin Domain II Nup54 PF13874.1 gi|557694999|ref|YP_008798053.1| - 0.55 9.8 37.7 0.54 9.9 7.6 3.8 2 1 1 3 3 3 0 Nucleoporin complex subunit 54 Spc7 PF08317.6 gi|557694999|ref|YP_008798053.1| - 1.1 7.9 40.8 0.88 8.1 11.0 2.6 1 1 1 2 2 2 0 Spc7 kinetochore protein APG6 PF04111.7 gi|557694999|ref|YP_008798053.1| - 1.4 7.8 43.1 0.49 9.3 10.6 2.9 1 1 1 3 3 3 0 Autophagy protein Apg6 Atg14 PF10186.4 gi|557694999|ref|YP_008798053.1| - 2.1 7.2 40.6 3.5 6.5 12.3 2.4 1 1 1 2 2 2 0 UV radiation resistance protein and autophagy-related subunit 14 COG5 PF10392.4 gi|557694999|ref|YP_008798053.1| - 2.9 7.8 14.6 0.48 10.3 1.4 3.2 1 1 2 3 3 3 0 Golgi transport complex subunit 5 Mod_r PF07200.8 gi|557694999|ref|YP_008798053.1| - 3.1 7.6 35.5 0.17 11.7 6.9 3.7 2 2 1 3 3 3 0 Modifier of rudimentary (Mod(r)) protein DUF2400 PF09674.5 gi|557694999|ref|YP_008798053.1| - 3.5 7.2 10.9 2.2 7.9 1.6 2.5 1 1 0 2 2 2 0 Protein of unknown function (DUF2400) GAS PF13851.1 gi|557694999|ref|YP_008798053.1| - 4.5 6.4 52.1 0.088 11.9 11.5 2.1 1 1 1 2 2 2 0 Growth-arrest specific micro-tubule binding Dna2 PF08696.6 gi|557694999|ref|YP_008798053.1| - 5.1 6.3 9.5 0.51 9.6 0.9 2.5 2 1 0 2 2 2 0 DNA replication factor Dna2 DUF972 PF06156.8 gi|557694999|ref|YP_008798053.1| - 5.6 7.3 40.1 0.087 13.1 3.1 4.8 1 1 4 5 5 5 0 Protein of unknown function (DUF972) MAD PF05557.8 gi|557694999|ref|YP_008798053.1| - 5.6 4.9 48.2 0.0087 14.2 23.3 2.0 1 1 1 2 2 2 0 Mitotic checkpoint protein ATP_bind_1 PF03029.12 gi|557695000|ref|YP_008798054.1| - 7.9e-53 179.4 0.0 8.9e-53 179.2 0.0 1.0 1 0 0 1 1 1 1 Conserved hypothetical ATP binding protein AAA_16 PF13191.1 gi|557695000|ref|YP_008798054.1| - 7e-05 22.8 0.0 0.00014 21.8 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain CbiA PF01656.18 gi|557695000|ref|YP_008798054.1| - 0.00052 19.4 0.0 0.0007 19.0 0.0 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain SRP54 PF00448.17 gi|557695000|ref|YP_008798054.1| - 0.0042 16.5 0.0 0.96 8.8 0.0 2.2 2 0 0 2 2 2 2 SRP54-type protein, GTPase domain MMR_HSR1 PF01926.18 gi|557695000|ref|YP_008798054.1| - 0.0044 16.9 0.0 0.012 15.5 0.0 1.7 1 1 0 1 1 1 1 50S ribosome-binding GTPase GTP_EFTU PF00009.22 gi|557695000|ref|YP_008798054.1| - 0.0056 16.1 0.0 0.17 11.3 0.0 2.6 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain AAA_22 PF13401.1 gi|557695000|ref|YP_008798054.1| - 0.014 15.5 0.0 0.069 13.2 0.0 2.2 2 1 0 2 2 2 0 AAA domain AAA_24 PF13479.1 gi|557695000|ref|YP_008798054.1| - 0.021 14.3 0.0 0.052 13.1 0.0 1.6 2 0 0 2 2 2 0 AAA domain ArgK PF03308.11 gi|557695000|ref|YP_008798054.1| - 0.026 13.2 0.1 0.17 10.6 0.0 2.2 3 0 0 3 3 3 0 ArgK protein NACHT PF05729.7 gi|557695000|ref|YP_008798054.1| - 0.067 12.8 0.1 0.15 11.6 0.1 1.9 1 1 0 1 1 1 0 NACHT domain ArsA_ATPase PF02374.10 gi|557695000|ref|YP_008798054.1| - 0.09 11.7 0.0 0.15 11.0 0.0 1.5 1 1 0 1 1 1 0 Anion-transporting ATPase DUF258 PF03193.11 gi|557695000|ref|YP_008798054.1| - 0.1 11.7 0.0 1.4 8.0 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function, DUF258 AAA_18 PF13238.1 gi|557695000|ref|YP_008798054.1| - 0.11 12.7 0.0 0.17 12.2 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.1 gi|557695000|ref|YP_008798054.1| - 0.12 11.9 0.1 0.4 10.2 0.0 1.8 2 0 0 2 2 2 0 AAA domain ABC_tran PF00005.22 gi|557695000|ref|YP_008798054.1| - 0.13 12.5 0.0 0.18 12.0 0.0 1.5 1 1 0 1 1 1 0 ABC transporter Amidase PF01425.16 gi|557695001|ref|YP_008798055.1| - 4.2e-107 358.7 0.0 5.2e-107 358.4 0.0 1.0 1 0 0 1 1 1 1 Amidase Proteasome PF00227.21 gi|557695002|ref|YP_008798056.1| - 3e-49 166.9 0.0 3.6e-49 166.6 0.0 1.1 1 0 0 1 1 1 1 Proteasome subunit Proteasome_A_N PF10584.4 gi|557695002|ref|YP_008798056.1| - 5.2e-14 51.2 0.7 1.4e-13 49.8 0.2 1.9 2 0 0 2 2 2 1 Proteasome subunit A N-terminal signature SBDS PF01172.13 gi|557695003|ref|YP_008798057.1| - 9.3e-23 79.8 0.0 1.3e-22 79.3 0.0 1.2 1 0 0 1 1 1 1 Shwachman-Bodian-Diamond syndrome (SBDS) protein SBDS_C PF09377.5 gi|557695003|ref|YP_008798057.1| - 1.8e-21 76.1 0.0 2.8e-21 75.4 0.0 1.3 1 0 0 1 1 1 1 SBDS protein C-terminal domain EFG_C PF00679.19 gi|557695003|ref|YP_008798057.1| - 0.007 16.2 0.0 0.016 15.0 0.0 1.5 1 0 0 1 1 1 1 Elongation factor G C-terminus ECR1_N PF14382.1 gi|557695004|ref|YP_008798058.1| - 8.6e-10 37.7 0.0 1.7e-09 36.8 0.0 1.5 1 0 0 1 1 1 1 Exosome complex exonuclease RRP4 N-terminal region KH_1 PF00013.24 gi|557695004|ref|YP_008798058.1| - 3.1e-09 36.3 0.0 7.7e-09 35.0 0.0 1.6 1 0 0 1 1 1 1 KH domain KH_3 PF13014.1 gi|557695004|ref|YP_008798058.1| - 8.3e-05 22.1 0.2 0.00031 20.3 0.1 2.0 2 0 0 2 2 2 1 KH domain S1 PF00575.18 gi|557695004|ref|YP_008798058.1| - 0.0005 20.1 0.5 0.0012 18.9 0.3 1.7 1 1 0 1 1 1 1 S1 RNA binding domain KH_2 PF07650.12 gi|557695004|ref|YP_008798058.1| - 0.00076 18.9 0.2 0.0023 17.4 0.2 1.8 1 0 0 1 1 1 1 KH domain KH_4 PF13083.1 gi|557695004|ref|YP_008798058.1| - 0.14 11.8 0.4 0.31 10.7 0.1 1.7 2 0 0 2 2 2 0 KH domain RNase_PH PF01138.16 gi|557695005|ref|YP_008798059.1| - 1.9e-33 115.5 0.0 2.6e-33 115.1 0.0 1.2 1 0 0 1 1 1 1 3' exoribonuclease family, domain 1 RNase_PH_C PF03725.10 gi|557695005|ref|YP_008798059.1| - 2e-16 59.6 0.3 4e-16 58.7 0.2 1.5 1 0 0 1 1 1 1 3' exoribonuclease family, domain 2 RNase_PH PF01138.16 gi|557695006|ref|YP_008798060.1| - 1.3e-30 106.4 0.0 1.7e-30 106.0 0.0 1.2 1 0 0 1 1 1 1 3' exoribonuclease family, domain 1 RNase_PH_C PF03725.10 gi|557695006|ref|YP_008798060.1| - 3.2e-07 30.1 0.1 6.2e-07 29.2 0.1 1.5 1 0 0 1 1 1 1 3' exoribonuclease family, domain 2 UBA_2 PF08587.6 gi|557695006|ref|YP_008798060.1| - 0.021 14.9 0.1 0.23 11.6 0.0 2.4 1 1 1 2 2 2 0 Ubiquitin associated domain (UBA) Ribosomal_L37ae PF01780.14 gi|557695007|ref|YP_008798061.1| - 1.9e-21 75.7 5.2 2.1e-21 75.5 3.6 1.0 1 0 0 1 1 1 1 Ribosomal L37ae protein family Zn_Tnp_IS1595 PF12760.2 gi|557695007|ref|YP_008798061.1| - 7.5e-05 22.4 3.7 9.4e-05 22.1 2.6 1.2 1 0 0 1 1 1 1 Transposase zinc-ribbon domain OrfB_Zn_ribbon PF07282.6 gi|557695007|ref|YP_008798061.1| - 0.00018 21.0 0.7 0.00022 20.8 0.5 1.2 1 0 0 1 1 1 1 Putative transposase DNA-binding domain Zn-ribbon_8 PF09723.5 gi|557695007|ref|YP_008798061.1| - 0.0082 16.0 1.9 0.23 11.4 0.1 2.2 2 0 0 2 2 2 1 Zinc ribbon domain RNA_POL_M_15KD PF02150.11 gi|557695007|ref|YP_008798061.1| - 0.013 15.1 1.4 0.34 10.6 0.1 2.2 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit Rubredoxin PF00301.15 gi|557695007|ref|YP_008798061.1| - 0.035 13.9 1.8 0.94 9.4 0.1 2.2 2 0 0 2 2 2 0 Rubredoxin DZR PF12773.2 gi|557695007|ref|YP_008798061.1| - 0.039 13.7 0.8 0.071 12.9 0.5 1.5 1 1 0 1 1 1 0 Double zinc ribbon UPF0547 PF10571.4 gi|557695007|ref|YP_008798061.1| - 0.063 12.9 4.0 0.55 9.9 0.1 2.3 2 1 0 2 2 2 0 Uncharacterised protein family UPF0547 zf-RanBP PF00641.13 gi|557695007|ref|YP_008798061.1| - 0.11 11.6 4.2 3.2 6.9 0.3 2.2 2 0 0 2 2 2 0 Zn-finger in Ran binding protein and others C1_1 PF00130.17 gi|557695007|ref|YP_008798061.1| - 0.12 12.0 0.8 0.16 11.7 0.5 1.2 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) zf-ribbon_3 PF13248.1 gi|557695007|ref|YP_008798061.1| - 0.14 11.3 1.2 13 5.1 0.0 2.2 2 0 0 2 2 2 0 zinc-ribbon domain PHD_2 PF13831.1 gi|557695007|ref|YP_008798061.1| - 0.19 11.0 3.6 0.74 9.1 0.4 2.2 2 0 0 2 2 2 0 PHD-finger zf-FPG_IleRS PF06827.9 gi|557695007|ref|YP_008798061.1| - 0.79 9.4 0.1 0.79 9.4 0.1 2.3 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS Pcc1 PF09341.5 gi|557695008|ref|YP_008798062.1| - 4.2e-15 55.5 0.7 4.6e-15 55.4 0.5 1.0 1 0 0 1 1 1 1 Transcription factor Pcc1 Prefoldin_2 PF01920.15 gi|557695009|ref|YP_008798063.1| - 6.8e-23 80.4 13.1 7.7e-23 80.2 9.1 1.0 1 0 0 1 1 1 1 Prefoldin subunit DUF4140 PF13600.1 gi|557695009|ref|YP_008798063.1| - 0.15 12.5 9.5 1.8 9.0 1.0 2.1 2 0 0 2 2 2 0 N-terminal domain of unknown function (DUF4140) DUF4201 PF13870.1 gi|557695009|ref|YP_008798063.1| - 0.15 11.4 8.2 2.3 7.6 1.8 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4201) DUF2408 PF10303.4 gi|557695009|ref|YP_008798063.1| - 0.27 11.3 6.5 1.4 9.0 4.6 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF2408) HALZ PF02183.13 gi|557695009|ref|YP_008798063.1| - 0.62 9.8 0.1 0.62 9.8 0.0 3.6 3 1 0 3 3 3 0 Homeobox associated leucine zipper FlaC_arch PF05377.6 gi|557695009|ref|YP_008798063.1| - 1.1 9.2 9.1 1.7 8.6 0.6 2.3 2 0 0 2 2 2 0 Flagella accessory protein C (FlaC) FUSC PF04632.7 gi|557695009|ref|YP_008798063.1| - 1.1 7.5 4.0 1.3 7.3 2.8 1.0 1 0 0 1 1 1 0 Fusaric acid resistance protein family Shugoshin_N PF07558.6 gi|557695009|ref|YP_008798063.1| - 1.1 8.9 9.2 7.6 6.3 0.2 3.0 3 0 0 3 3 3 0 Shugoshin N-terminal coiled-coil region Spc7 PF08317.6 gi|557695009|ref|YP_008798063.1| - 1.3 7.5 10.6 1.5 7.3 7.4 1.1 1 0 0 1 1 1 0 Spc7 kinetochore protein DUF972 PF06156.8 gi|557695009|ref|YP_008798063.1| - 1.7 9.0 9.6 3.7 7.9 2.8 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF972) Mnd1 PF03962.10 gi|557695009|ref|YP_008798063.1| - 1.8 8.1 9.9 6.4 6.3 1.5 2.1 1 1 0 1 1 1 0 Mnd1 family DUF2968 PF11180.3 gi|557695009|ref|YP_008798063.1| - 2.5 7.4 12.3 0.95 8.8 2.2 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2968) DUF342 PF03961.8 gi|557695009|ref|YP_008798063.1| - 2.7 6.2 7.5 5.1 5.4 5.2 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF342) YlqD PF11068.3 gi|557695009|ref|YP_008798063.1| - 3.3 7.7 15.5 0.24 11.4 3.2 2.1 1 1 1 2 2 2 0 YlqD protein Leucyl-specific PF14795.1 gi|557695009|ref|YP_008798063.1| - 4.3 7.2 6.6 2.2 8.2 0.3 2.9 2 2 0 2 2 2 0 Leucine-tRNA synthetase-specific domain NTR2 PF15458.1 gi|557695009|ref|YP_008798063.1| - 5 6.2 14.1 2.6 7.2 2.3 2.1 2 0 0 2 2 2 0 Nineteen complex-related protein 2 Spc24 PF08286.6 gi|557695009|ref|YP_008798063.1| - 5.3 6.7 9.5 3.2 7.4 2.0 2.2 1 1 1 2 2 2 0 Spc24 subunit of Ndc80 Prefoldin PF02996.12 gi|557695009|ref|YP_008798063.1| - 6.6 6.4 11.1 9.6 5.8 2.0 2.3 1 1 1 2 2 2 0 Prefoldin subunit DHH PF01368.15 gi|557695010|ref|YP_008798064.1| - 5.5e-12 45.5 0.1 9.4e-12 44.7 0.0 1.3 1 0 0 1 1 1 1 DHH family DHHA1 PF02272.14 gi|557695010|ref|YP_008798064.1| - 2.7e-05 23.8 1.3 5.6e-05 22.7 0.5 1.8 2 0 0 2 2 2 1 DHHA1 domain ABC_tran PF00005.22 gi|557695011|ref|YP_008798065.1| - 5.8e-29 101.1 0.0 8.3e-29 100.6 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|557695011|ref|YP_008798065.1| - 6e-12 46.1 0.0 9.5e-07 29.0 0.1 2.1 2 0 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|557695011|ref|YP_008798065.1| - 5.1e-07 29.1 0.2 2.9e-06 26.6 0.1 1.9 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|557695011|ref|YP_008798065.1| - 0.00067 19.1 0.1 0.0014 18.1 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|557695011|ref|YP_008798065.1| - 0.00093 19.2 0.7 0.0015 18.5 0.4 1.5 1 1 0 1 1 1 1 AAA ATPase domain DUF258 PF03193.11 gi|557695011|ref|YP_008798065.1| - 0.0013 17.9 0.0 0.0027 16.9 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_10 PF12846.2 gi|557695011|ref|YP_008798065.1| - 0.0016 17.9 0.2 0.058 12.8 0.0 2.1 2 0 0 2 2 2 1 AAA-like domain AAA_25 PF13481.1 gi|557695011|ref|YP_008798065.1| - 0.0034 16.8 0.1 0.042 13.2 0.0 2.4 3 0 0 3 3 3 1 AAA domain Mg_chelatase PF01078.16 gi|557695011|ref|YP_008798065.1| - 0.0039 16.3 0.0 0.0067 15.6 0.0 1.3 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI AAA_22 PF13401.1 gi|557695011|ref|YP_008798065.1| - 0.0085 16.2 0.1 0.025 14.6 0.1 2.0 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.1 gi|557695011|ref|YP_008798065.1| - 0.012 15.9 0.0 0.02 15.2 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_15 PF13175.1 gi|557695011|ref|YP_008798065.1| - 0.02 13.9 0.0 3.6 6.5 0.0 2.1 2 0 0 2 2 2 0 AAA ATPase domain AAA_28 PF13521.1 gi|557695011|ref|YP_008798065.1| - 0.027 14.4 0.0 0.23 11.4 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA PF00004.24 gi|557695011|ref|YP_008798065.1| - 0.04 14.1 0.8 11 6.2 0.0 2.5 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_17 PF13207.1 gi|557695011|ref|YP_008798065.1| - 0.07 13.9 1.2 0.39 11.5 0.3 2.5 2 2 1 3 3 3 0 AAA domain AAA_33 PF13671.1 gi|557695011|ref|YP_008798065.1| - 0.079 12.8 0.0 0.16 11.8 0.0 1.5 1 0 0 1 1 1 0 AAA domain SbcCD_C PF13558.1 gi|557695011|ref|YP_008798065.1| - 0.084 12.8 0.4 0.69 9.8 0.3 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit MobB PF03205.9 gi|557695011|ref|YP_008798065.1| - 0.089 12.5 0.0 0.16 11.6 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B IstB_IS21 PF01695.12 gi|557695011|ref|YP_008798065.1| - 0.1 12.0 0.3 0.72 9.2 0.0 2.3 3 0 0 3 3 3 0 IstB-like ATP binding protein NACHT PF05729.7 gi|557695011|ref|YP_008798065.1| - 0.11 12.0 0.1 0.35 10.5 0.0 1.8 2 0 0 2 2 2 0 NACHT domain AAA_30 PF13604.1 gi|557695011|ref|YP_008798065.1| - 0.13 11.8 0.0 0.26 10.8 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_5 PF07728.9 gi|557695011|ref|YP_008798065.1| - 0.14 11.8 0.1 1.5 8.5 0.0 2.2 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_18 PF13238.1 gi|557695011|ref|YP_008798065.1| - 0.16 12.2 0.2 0.72 10.1 0.0 2.1 2 1 0 2 2 2 0 AAA domain ABC_tran PF00005.22 gi|557695012|ref|YP_008798066.1| - 2.8e-27 95.6 0.0 4.8e-27 94.9 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|557695012|ref|YP_008798066.1| - 6.4e-12 46.0 0.0 7e-06 26.2 0.0 2.1 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|557695012|ref|YP_008798066.1| - 2.8e-06 26.7 0.1 7e-05 22.1 0.0 2.2 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.1 gi|557695012|ref|YP_008798066.1| - 5e-06 26.9 0.0 8e-06 26.3 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|557695012|ref|YP_008798066.1| - 1.9e-05 23.9 0.0 0.014 14.4 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_29 PF13555.1 gi|557695012|ref|YP_008798066.1| - 0.00011 21.6 0.0 0.00029 20.3 0.0 1.7 1 0 0 1 1 1 1 P-loop containing region of AAA domain NACHT PF05729.7 gi|557695012|ref|YP_008798066.1| - 0.00084 19.0 0.1 0.0019 17.9 0.1 1.6 1 0 0 1 1 1 1 NACHT domain SRP54 PF00448.17 gi|557695012|ref|YP_008798066.1| - 0.0019 17.6 0.1 0.0047 16.4 0.0 1.7 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain NTPase_1 PF03266.10 gi|557695012|ref|YP_008798066.1| - 0.0024 17.5 0.8 0.079 12.6 0.1 2.2 2 0 0 2 2 2 1 NTPase AAA_19 PF13245.1 gi|557695012|ref|YP_008798066.1| - 0.0041 16.8 0.0 0.1 12.3 0.0 2.3 2 0 0 2 2 2 1 Part of AAA domain UPF0079 PF02367.12 gi|557695012|ref|YP_008798066.1| - 0.0041 16.7 0.1 0.0098 15.5 0.1 1.6 1 0 0 1 1 1 1 Uncharacterised P-loop hydrolase UPF0079 AAA_16 PF13191.1 gi|557695012|ref|YP_008798066.1| - 0.0047 16.9 0.1 0.0092 15.9 0.1 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_30 PF13604.1 gi|557695012|ref|YP_008798066.1| - 0.0086 15.6 0.0 0.023 14.2 0.0 1.6 2 0 0 2 2 2 1 AAA domain Sigma54_activ_2 PF14532.1 gi|557695012|ref|YP_008798066.1| - 0.011 15.7 0.0 0.028 14.4 0.0 1.6 1 0 0 1 1 1 0 Sigma-54 interaction domain Mg_chelatase PF01078.16 gi|557695012|ref|YP_008798066.1| - 0.011 14.8 0.0 0.023 13.8 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_22 PF13401.1 gi|557695012|ref|YP_008798066.1| - 0.012 15.7 0.0 0.029 14.5 0.0 1.7 1 0 0 1 1 1 0 AAA domain Arch_ATPase PF01637.13 gi|557695012|ref|YP_008798066.1| - 0.012 15.2 0.1 0.024 14.3 0.0 1.6 1 1 0 1 1 1 0 Archaeal ATPase DLIC PF05783.6 gi|557695012|ref|YP_008798066.1| - 0.017 13.8 0.1 0.026 13.2 0.0 1.2 1 0 0 1 1 1 0 Dynein light intermediate chain (DLIC) Gag_p17 PF00540.13 gi|557695012|ref|YP_008798066.1| - 0.021 14.5 0.0 0.05 13.3 0.0 1.6 1 0 0 1 1 1 0 gag gene protein p17 (matrix protein) cobW PF02492.14 gi|557695012|ref|YP_008798066.1| - 0.022 14.1 0.2 0.045 13.1 0.1 1.5 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_25 PF13481.1 gi|557695012|ref|YP_008798066.1| - 0.043 13.2 0.1 0.1 11.9 0.0 1.7 2 0 0 2 2 2 0 AAA domain PduV-EutP PF10662.4 gi|557695012|ref|YP_008798066.1| - 0.046 13.2 0.1 0.11 11.9 0.1 1.6 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation DUF3584 PF12128.3 gi|557695012|ref|YP_008798066.1| - 0.052 10.8 0.1 0.069 10.4 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) AAA_5 PF07728.9 gi|557695012|ref|YP_008798066.1| - 0.069 12.8 0.1 0.25 11.0 0.0 1.9 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) NB-ARC PF00931.17 gi|557695012|ref|YP_008798066.1| - 0.083 11.7 0.0 0.16 10.8 0.0 1.4 1 0 0 1 1 1 0 NB-ARC domain Miro PF08477.8 gi|557695012|ref|YP_008798066.1| - 0.086 13.3 0.1 0.43 11.0 0.0 2.0 2 0 0 2 2 2 0 Miro-like protein AAA_10 PF12846.2 gi|557695012|ref|YP_008798066.1| - 0.096 12.1 0.1 0.17 11.2 0.0 1.4 1 1 0 1 1 1 0 AAA-like domain MobB PF03205.9 gi|557695012|ref|YP_008798066.1| - 0.1 12.3 0.8 0.18 11.4 0.1 1.8 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_18 PF13238.1 gi|557695012|ref|YP_008798066.1| - 0.11 12.7 0.0 0.3 11.4 0.0 1.8 2 0 0 2 2 2 0 AAA domain DUF258 PF03193.11 gi|557695012|ref|YP_008798066.1| - 0.11 11.6 0.1 0.21 10.7 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_28 PF13521.1 gi|557695012|ref|YP_008798066.1| - 0.17 11.8 0.3 0.62 10.0 0.2 2.0 1 1 0 1 1 1 0 AAA domain CbiQ PF02361.11 gi|557695013|ref|YP_008798067.1| - 8.7e-37 126.8 11.3 8.7e-37 126.8 7.9 1.8 2 0 0 2 2 2 1 Cobalt transport protein TBP PF00352.16 gi|557695014|ref|YP_008798068.1| - 3.6e-65 215.3 0.1 1.4e-32 110.8 0.0 2.0 2 0 0 2 2 2 2 Transcription factor TFIID (or TATA-binding protein, TBP) DUF3378 PF11858.3 gi|557695014|ref|YP_008798068.1| - 7.2e-07 29.1 0.1 0.039 14.0 0.0 2.3 2 0 0 2 2 2 2 Domain of unknown function (DUF3378) BPL_LplA_LipB PF03099.14 gi|557695015|ref|YP_008798069.1| - 5.4e-17 61.9 0.1 7.8e-17 61.4 0.0 1.2 1 0 0 1 1 1 1 Biotin/lipoate A/B protein ligase family Pyr_redox_2 PF07992.9 gi|557695016|ref|YP_008798070.1| - 3.5e-38 131.5 0.0 6.1e-38 130.7 0.0 1.4 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.17 gi|557695016|ref|YP_008798070.1| - 2.2e-32 111.3 0.7 6.4e-32 109.8 0.5 1.8 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox PF00070.22 gi|557695016|ref|YP_008798070.1| - 7.2e-23 80.7 8.8 9.5e-21 74.0 0.4 3.7 4 1 0 4 4 4 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|557695016|ref|YP_008798070.1| - 1.3e-11 44.9 2.8 3e-10 40.4 0.8 2.2 1 1 1 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.17 gi|557695016|ref|YP_008798070.1| - 2.3e-09 36.6 7.4 4e-09 35.8 2.1 2.6 3 0 0 3 3 3 1 Glucose inhibited division protein A DAO PF01266.19 gi|557695016|ref|YP_008798070.1| - 3.3e-08 32.8 17.7 2.3e-06 26.7 0.4 4.1 3 1 1 4 4 4 2 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|557695016|ref|YP_008798070.1| - 3.1e-07 29.6 7.9 1.6e-05 23.9 0.3 3.8 4 0 0 4 4 4 1 FAD binding domain FAD_oxidored PF12831.2 gi|557695016|ref|YP_008798070.1| - 6.4e-07 28.7 2.3 6.4e-07 28.7 1.6 1.6 2 0 0 2 2 2 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.1 gi|557695016|ref|YP_008798070.1| - 1.2e-06 28.4 3.2 0.00014 21.7 0.1 2.7 2 0 0 2 2 2 2 NAD(P)-binding Rossmann-like domain FAD_binding_3 PF01494.14 gi|557695016|ref|YP_008798070.1| - 5.9e-06 25.5 5.8 0.00014 21.0 0.1 2.6 2 1 0 2 2 2 2 FAD binding domain HI0933_like PF03486.9 gi|557695016|ref|YP_008798070.1| - 0.00055 18.5 8.2 0.02 13.3 0.1 3.9 4 0 0 4 4 4 1 HI0933-like protein NAD_binding_7 PF13241.1 gi|557695016|ref|YP_008798070.1| - 0.00079 19.6 0.8 0.25 11.6 0.1 2.8 2 1 0 2 2 2 1 Putative NAD(P)-binding Thi4 PF01946.12 gi|557695016|ref|YP_008798070.1| - 0.005 15.9 0.3 0.005 15.9 0.2 2.6 3 1 0 3 3 3 1 Thi4 family XdhC_C PF13478.1 gi|557695016|ref|YP_008798070.1| - 0.038 14.2 0.1 2.5 8.4 0.0 2.6 2 0 0 2 2 2 0 XdhC Rossmann domain Lycopene_cycl PF05834.7 gi|557695016|ref|YP_008798070.1| - 0.041 12.7 2.7 0.14 11.0 0.2 2.5 2 1 0 2 2 2 0 Lycopene cyclase protein NAD_binding_9 PF13454.1 gi|557695016|ref|YP_008798070.1| - 0.05 13.3 4.5 0.98 9.1 0.0 3.2 3 0 0 3 3 3 0 FAD-NAD(P)-binding Trp_halogenase PF04820.9 gi|557695016|ref|YP_008798070.1| - 0.06 11.9 0.1 0.06 11.9 0.1 2.0 3 0 0 3 3 3 0 Tryptophan halogenase Transket_pyr PF02779.19 gi|557695017|ref|YP_008798071.1| - 7.5e-51 172.1 0.0 1e-50 171.7 0.0 1.2 1 0 0 1 1 1 1 Transketolase, pyrimidine binding domain Transketolase_C PF02780.15 gi|557695017|ref|YP_008798071.1| - 2.5e-38 130.7 0.2 1.2e-37 128.5 0.0 1.9 2 0 0 2 2 2 1 Transketolase, C-terminal domain CPSase_L_D2 PF02786.12 gi|557695017|ref|YP_008798071.1| - 0.16 11.2 0.1 10 5.3 0.0 2.1 2 0 0 2 2 2 0 Carbamoyl-phosphate synthase L chain, ATP binding domain Radical_SAM PF04055.16 gi|557695018|ref|YP_008798072.1| - 5.1e-11 43.0 0.0 7.2e-11 42.5 0.0 1.2 1 0 0 1 1 1 1 Radical SAM superfamily DUF473 PF04322.7 gi|557695018|ref|YP_008798072.1| - 0.14 11.7 0.0 0.25 11.0 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF473) NUDIX PF00293.23 gi|557695019|ref|YP_008798073.1| - 1.6e-21 76.3 0.5 2e-21 76.0 0.3 1.1 1 0 0 1 1 1 1 NUDIX domain CarboxypepD_reg PF13620.1 gi|557695020|ref|YP_008798074.1| - 8.4e-18 64.2 21.3 6.1e-09 35.8 0.7 5.8 5 1 0 5 5 5 4 Carboxypeptidase regulatory-like domain Big_1 PF02369.11 gi|557695020|ref|YP_008798074.1| - 6.9e-09 35.5 21.4 0.0017 18.2 1.1 5.5 5 1 1 6 6 6 3 Bacterial Ig-like domain (group 1) DUF4198 PF10670.4 gi|557695020|ref|YP_008798074.1| - 0.014 15.4 1.6 0.98 9.3 0.0 2.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4198) Cna_B PF05738.8 gi|557695020|ref|YP_008798074.1| - 0.024 14.3 0.3 0.12 12.1 0.0 2.3 2 0 0 2 2 2 0 Cna protein B-type domain PKD PF00801.15 gi|557695020|ref|YP_008798074.1| - 0.13 12.0 5.0 0.075 12.7 0.4 2.7 3 1 0 3 3 3 0 PKD domain Dioxygenase_C PF00775.16 gi|557695020|ref|YP_008798074.1| - 0.17 11.1 0.2 35 3.5 0.0 3.6 4 1 0 4 4 4 0 Dioxygenase F420_ligase PF01996.11 gi|557695022|ref|YP_008798076.1| - 8.4e-72 240.9 0.8 9.7e-72 240.7 0.6 1.0 1 0 0 1 1 1 1 F420-0:Gamma-glutamyl ligase Mrr_cat PF04471.7 gi|557695023|ref|YP_008798077.1| - 0.00026 20.7 0.0 0.00043 20.0 0.0 1.3 1 0 0 1 1 1 1 Restriction endonuclease NERD PF08378.6 gi|557695023|ref|YP_008798077.1| - 0.0018 18.5 0.0 0.0031 17.7 0.0 1.5 1 1 0 1 1 1 1 Nuclease-related domain HIT PF01230.18 gi|557695024|ref|YP_008798078.1| - 2.1e-12 47.3 0.0 2.9e-12 46.9 0.0 1.1 1 0 0 1 1 1 1 HIT domain CwfJ_C_1 PF04677.10 gi|557695024|ref|YP_008798078.1| - 1.1e-07 31.4 0.0 1.9e-07 30.7 0.0 1.3 1 0 0 1 1 1 1 Protein similar to CwfJ C-terminus 1 DcpS_C PF11969.3 gi|557695024|ref|YP_008798078.1| - 6.1e-07 29.6 0.0 8.6e-07 29.1 0.0 1.2 1 0 0 1 1 1 1 Scavenger mRNA decapping enzyme C-term binding Radical_SAM PF04055.16 gi|557695025|ref|YP_008798079.1| - 1.1e-20 74.4 0.1 6.9e-19 68.6 0.0 2.6 2 1 0 2 2 2 1 Radical SAM superfamily Wyosine_form PF08608.7 gi|557695025|ref|YP_008798079.1| - 8.3e-18 64.2 0.0 2.8e-17 62.5 0.0 1.9 2 0 0 2 2 2 1 Wyosine base formation Fer4_12 PF13353.1 gi|557695025|ref|YP_008798079.1| - 8.9e-05 22.6 0.1 0.095 12.8 0.0 2.3 1 1 1 2 2 2 2 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|557695025|ref|YP_008798079.1| - 0.00077 19.4 0.1 0.039 13.9 0.1 2.3 1 1 0 1 1 1 1 4Fe-4S single cluster domain HAD_2 PF13419.1 gi|557695025|ref|YP_008798079.1| - 0.00082 19.6 0.0 0.0013 18.9 0.0 1.3 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase PfkB PF00294.19 gi|557695026|ref|YP_008798080.1| - 2.7e-13 49.7 0.1 6.4e-07 28.7 0.0 2.1 2 0 0 2 2 2 2 pfkB family carbohydrate kinase Carb_kinase PF01256.12 gi|557695026|ref|YP_008798080.1| - 0.051 12.8 0.0 0.09 12.0 0.0 1.4 1 0 0 1 1 1 0 Carbohydrate kinase Virulence_fact PF13769.1 gi|557695027|ref|YP_008798081.1| - 0.099 12.5 0.1 0.15 11.9 0.1 1.4 1 1 0 1 1 1 0 Virulence factor AdoMet_dc PF02675.10 gi|557695028|ref|YP_008798082.1| - 2e-33 114.4 0.0 2.5e-33 114.1 0.0 1.1 1 0 0 1 1 1 1 S-adenosylmethionine decarboxylase MoaE PF02391.12 gi|557695029|ref|YP_008798083.1| - 2.4e-21 75.7 0.1 2.9e-21 75.4 0.0 1.1 1 0 0 1 1 1 1 MoaE protein ThiS PF02597.15 gi|557695030|ref|YP_008798084.1| - 5.1e-20 71.6 0.0 6e-20 71.4 0.0 1.1 1 0 0 1 1 1 1 ThiS family Lambda_tail_I PF06805.7 gi|557695030|ref|YP_008798084.1| - 0.0051 16.6 0.0 0.0064 16.2 0.0 1.4 1 1 0 1 1 1 1 Bacteriophage lambda tail assembly protein I DUF2635 PF10948.3 gi|557695030|ref|YP_008798084.1| - 0.0067 15.6 0.0 0.0099 15.1 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF2635) TGS PF02824.16 gi|557695030|ref|YP_008798084.1| - 0.013 15.2 0.0 4.3 7.2 0.0 2.2 2 0 0 2 2 2 0 TGS domain dUTPase PF00692.14 gi|557695031|ref|YP_008798085.1| - 9.4e-19 67.1 0.0 1.3e-18 66.7 0.0 1.2 1 0 0 1 1 1 1 dUTPase DCD PF06559.6 gi|557695031|ref|YP_008798085.1| - 0.0015 17.0 0.0 0.0028 16.1 0.0 1.5 1 1 0 1 1 1 1 2'-deoxycytidine 5'-triphosphate deaminase (DCD) DUF3821 PF12863.2 gi|557695031|ref|YP_008798085.1| - 0.087 12.4 0.0 0.13 11.9 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3821) Lactamase_B_2 PF12706.2 gi|557695032|ref|YP_008798086.1| - 4.5e-26 91.5 0.3 5.6e-26 91.2 0.2 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|557695032|ref|YP_008798086.1| - 4.6e-16 59.0 0.1 1.9e-15 57.0 0.1 1.9 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.1 gi|557695032|ref|YP_008798086.1| - 1.1e-07 31.6 0.0 1.9e-07 30.9 0.0 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain MoCF_biosynth PF00994.19 gi|557695033|ref|YP_008798087.1| - 8.4e-32 109.5 0.0 9.7e-32 109.3 0.0 1.0 1 0 0 1 1 1 1 Probable molybdopterin binding domain HAD PF12710.2 gi|557695033|ref|YP_008798087.1| - 0.023 14.8 0.0 1.2 9.2 0.0 2.1 1 1 1 2 2 2 0 haloacid dehalogenase-like hydrolase MoaC PF01967.16 gi|557695034|ref|YP_008798088.1| - 1e-42 145.0 1.9 1.1e-42 144.8 1.3 1.0 1 0 0 1 1 1 1 MoaC family Ribosomal_S11 PF00411.14 gi|557695035|ref|YP_008798089.1| - 1.2e-34 118.8 0.3 1.5e-34 118.4 0.2 1.1 1 0 0 1 1 1 1 Ribosomal protein S11 S4 PF01479.20 gi|557695036|ref|YP_008798090.1| - 2.4e-17 62.0 0.1 4.9e-17 61.1 0.1 1.5 1 0 0 1 1 1 1 S4 domain Ribosomal_S4 PF00163.14 gi|557695036|ref|YP_008798090.1| - 2.9e-06 27.5 4.3 3.1e-06 27.4 1.6 2.0 2 1 0 2 2 2 1 Ribosomal protein S4/S9 N-terminal domain IL4 PF00727.13 gi|557695036|ref|YP_008798090.1| - 0.15 11.9 0.1 0.24 11.2 0.0 1.3 1 0 0 1 1 1 0 Interleukin 4 DAO PF01266.19 gi|557695037|ref|YP_008798091.1| - 3e-14 52.6 0.7 2.4e-07 29.9 0.1 2.2 2 0 0 2 2 2 2 FAD dependent oxidoreductase FAD_binding_3 PF01494.14 gi|557695037|ref|YP_008798091.1| - 4.5e-14 52.2 1.6 5.4e-05 22.4 0.1 3.1 3 0 0 3 3 3 3 FAD binding domain Pyr_redox_2 PF07992.9 gi|557695037|ref|YP_008798091.1| - 6.7e-10 39.1 0.2 1.4e-09 38.1 0.1 1.6 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.7 gi|557695037|ref|YP_008798091.1| - 4.1e-09 35.8 0.1 2.4e-06 26.7 0.0 2.2 2 0 0 2 2 2 2 Lycopene cyclase protein HI0933_like PF03486.9 gi|557695037|ref|YP_008798091.1| - 1.4e-08 33.6 1.5 7.7e-06 24.6 0.2 2.3 2 0 0 2 2 2 2 HI0933-like protein FAD_oxidored PF12831.2 gi|557695037|ref|YP_008798091.1| - 2.5e-08 33.4 4.2 5.6e-08 32.2 1.5 2.3 2 1 0 2 2 2 1 FAD dependent oxidoreductase Trp_halogenase PF04820.9 gi|557695037|ref|YP_008798091.1| - 5.8e-07 28.5 0.1 0.018 13.6 0.0 2.1 2 0 0 2 2 2 2 Tryptophan halogenase Thi4 PF01946.12 gi|557695037|ref|YP_008798091.1| - 2e-06 27.1 0.2 7.3e-05 21.9 0.0 2.5 2 0 0 2 2 2 1 Thi4 family GIDA PF01134.17 gi|557695037|ref|YP_008798091.1| - 4.9e-06 25.6 3.3 1.2e-05 24.3 2.3 1.8 1 1 0 1 1 1 1 Glucose inhibited division protein A FAD_binding_2 PF00890.19 gi|557695037|ref|YP_008798091.1| - 0.0001 21.2 0.7 0.0001 21.2 0.5 2.0 3 0 0 3 3 3 1 FAD binding domain NAD_binding_8 PF13450.1 gi|557695037|ref|YP_008798091.1| - 0.00017 21.5 0.0 0.00017 21.5 0.0 2.3 3 0 0 3 3 2 1 NAD(P)-binding Rossmann-like domain Pyr_redox_3 PF13738.1 gi|557695037|ref|YP_008798091.1| - 0.00042 20.4 0.9 0.012 15.6 0.8 2.6 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|557695037|ref|YP_008798091.1| - 0.00088 19.6 0.6 0.0064 16.8 0.1 2.3 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.1 gi|557695037|ref|YP_008798091.1| - 0.0036 17.0 0.2 0.72 9.6 0.0 2.5 2 0 0 2 2 2 1 FAD-NAD(P)-binding DUF896 PF05979.7 gi|557695037|ref|YP_008798091.1| - 0.089 12.3 0.0 0.39 10.3 0.0 1.9 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF896) Peptidase_M20 PF01546.23 gi|557695038|ref|YP_008798092.1| - 5.6e-26 91.2 0.0 9.5e-26 90.4 0.0 1.3 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.9 gi|557695038|ref|YP_008798092.1| - 3.4e-20 71.8 0.0 5.6e-20 71.1 0.0 1.3 1 0 0 1 1 1 1 Peptidase dimerisation domain Isochorismatase PF00857.15 gi|557695039|ref|YP_008798093.1| - 6.4e-41 140.1 0.0 7.2e-41 140.0 0.0 1.0 1 0 0 1 1 1 1 Isochorismatase family QRPTase_C PF01729.14 gi|557695040|ref|YP_008798094.1| - 3.2e-21 75.6 0.0 5.4e-21 74.8 0.0 1.4 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain QRPTase_N PF02749.11 gi|557695040|ref|YP_008798094.1| - 0.00012 21.8 0.0 0.00093 18.9 0.0 2.4 3 0 0 3 3 3 1 Quinolinate phosphoribosyl transferase, N-terminal domain BtpA PF03437.10 gi|557695040|ref|YP_008798094.1| - 0.081 12.1 0.0 0.3 10.3 0.0 1.8 2 0 0 2 2 2 0 BtpA family Lyase_1 PF00206.15 gi|557695041|ref|YP_008798095.1| - 1.1e-106 356.5 0.0 1.5e-106 356.1 0.0 1.1 1 0 0 1 1 1 1 Lyase FumaraseC_C PF10415.4 gi|557695041|ref|YP_008798095.1| - 5.2e-16 58.4 1.3 4.3e-15 55.5 0.4 2.5 2 0 0 2 2 2 1 Fumarase C C-terminus Fe-ADH_2 PF13685.1 gi|557695042|ref|YP_008798096.1| - 1.3e-58 198.2 0.1 1.7e-58 197.8 0.1 1.2 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH PF00465.14 gi|557695042|ref|YP_008798096.1| - 2.6e-17 62.5 0.6 7.2e-17 61.0 0.4 1.7 1 1 0 1 1 1 1 Iron-containing alcohol dehydrogenase DHQ_synthase PF01761.15 gi|557695042|ref|YP_008798096.1| - 1.6e-07 30.5 0.2 2.2e-06 26.7 0.1 2.3 1 1 0 1 1 1 1 3-dehydroquinate synthase AIRC PF00731.15 gi|557695042|ref|YP_008798096.1| - 0.11 11.8 0.1 0.3 10.3 0.1 1.7 1 1 0 1 1 1 0 AIR carboxylase Aldolase_2 PF10120.4 gi|557695043|ref|YP_008798097.1| - 1.1e-33 115.9 0.1 2.4e-33 114.9 0.0 1.5 2 0 0 2 2 2 1 Putative aldolase Cro PF09048.5 gi|557695043|ref|YP_008798097.1| - 0.0012 18.4 0.0 0.0026 17.3 0.0 1.5 1 0 0 1 1 1 1 Cro HTH_37 PF13744.1 gi|557695043|ref|YP_008798097.1| - 0.0016 18.2 0.0 0.0033 17.1 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_3 PF01381.17 gi|557695043|ref|YP_008798097.1| - 0.0031 17.3 0.4 0.026 14.3 0.0 2.3 2 0 0 2 2 2 1 Helix-turn-helix HTH_1 PF00126.22 gi|557695043|ref|YP_008798097.1| - 0.0092 15.7 0.1 0.033 13.9 0.0 2.0 2 0 0 2 2 2 1 Bacterial regulatory helix-turn-helix protein, lysR family P22_Cro PF14549.1 gi|557695043|ref|YP_008798097.1| - 0.015 15.0 0.1 0.061 13.0 0.1 2.0 2 0 0 2 2 2 0 DNA-binding transcriptional regulator Cro MarR_2 PF12802.2 gi|557695043|ref|YP_008798097.1| - 0.02 14.5 0.0 0.19 11.4 0.0 2.3 2 0 0 2 2 2 0 MarR family Sigma70_r4 PF04545.11 gi|557695043|ref|YP_008798097.1| - 0.024 13.9 0.0 0.083 12.2 0.0 1.9 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_23 PF13384.1 gi|557695043|ref|YP_008798097.1| - 0.039 13.6 0.1 0.16 11.6 0.0 2.1 2 1 0 2 2 2 0 Homeodomain-like domain HTH_3 PF01381.17 gi|557695044|ref|YP_008798098.1| - 4.9e-09 35.8 0.1 5.3e-08 32.5 0.0 2.1 2 0 0 2 2 2 1 Helix-turn-helix HTH_23 PF13384.1 gi|557695044|ref|YP_008798098.1| - 1.6e-05 24.4 0.2 0.00032 20.2 0.0 2.2 2 0 0 2 2 2 1 Homeodomain-like domain HTH_37 PF13744.1 gi|557695044|ref|YP_008798098.1| - 2.8e-05 23.8 0.2 9.1e-05 22.1 0.0 1.9 2 1 1 3 3 3 1 Helix-turn-helix domain HTH_31 PF13560.1 gi|557695044|ref|YP_008798098.1| - 5.2e-05 23.3 0.1 0.0001 22.4 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain Sigma70_r4 PF04545.11 gi|557695044|ref|YP_008798098.1| - 7.9e-05 21.8 0.8 0.00046 19.4 0.1 2.1 2 0 0 2 2 2 1 Sigma-70, region 4 Cro PF09048.5 gi|557695044|ref|YP_008798098.1| - 0.0003 20.3 0.0 0.00054 19.5 0.0 1.5 1 0 0 1 1 1 1 Cro HTH_19 PF12844.2 gi|557695044|ref|YP_008798098.1| - 0.00038 20.4 0.1 0.00079 19.4 0.0 1.6 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_38 PF13936.1 gi|557695044|ref|YP_008798098.1| - 0.00067 19.1 0.0 0.019 14.5 0.0 2.2 2 0 0 2 2 2 1 Helix-turn-helix domain Sigma70_r4_2 PF08281.7 gi|557695044|ref|YP_008798098.1| - 0.0015 17.9 0.1 0.052 13.0 0.0 2.2 2 0 0 2 2 2 1 Sigma-70, region 4 P22_Cro PF14549.1 gi|557695044|ref|YP_008798098.1| - 0.0065 16.1 0.2 0.033 13.9 0.0 2.0 2 0 0 2 2 2 1 DNA-binding transcriptional regulator Cro HTH_Crp_2 PF13545.1 gi|557695044|ref|YP_008798098.1| - 0.01 15.5 0.0 0.11 12.2 0.0 2.1 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain HTH_28 PF13518.1 gi|557695044|ref|YP_008798098.1| - 0.016 15.2 0.5 3.3 7.8 0.1 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain RepB PF07506.6 gi|557695044|ref|YP_008798098.1| - 0.049 13.4 0.0 0.073 12.9 0.0 1.3 1 1 0 1 1 1 0 RepB plasmid partitioning protein HTH_1 PF00126.22 gi|557695044|ref|YP_008798098.1| - 0.055 13.2 0.0 0.097 12.4 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family DUF134 PF02001.11 gi|557695044|ref|YP_008798098.1| - 0.076 12.9 0.2 0.15 11.9 0.0 1.5 2 0 0 2 2 2 0 Protein of unknown function DUF134 HTH_22 PF13309.1 gi|557695044|ref|YP_008798098.1| - 0.08 12.7 0.1 0.23 11.2 0.1 1.8 1 0 0 1 1 1 0 HTH domain HTH_10 PF04967.7 gi|557695044|ref|YP_008798098.1| - 0.083 12.4 0.0 0.19 11.3 0.0 1.6 1 0 0 1 1 1 0 HTH DNA binding domain LacI PF00356.16 gi|557695044|ref|YP_008798098.1| - 0.19 11.3 1.2 0.5 10.0 0.1 2.2 2 1 0 2 2 2 0 Bacterial regulatory proteins, lacI family tRNA_deacylase PF04414.7 gi|557695045|ref|YP_008798099.1| - 1.3e-50 171.4 0.0 1.6e-50 171.1 0.0 1.1 1 0 0 1 1 1 1 D-aminoacyl-tRNA deacylase Methyltransf_26 PF13659.1 gi|557695046|ref|YP_008798100.1| - 7.4e-11 42.1 0.0 1.2e-10 41.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Spermine_synth PF01564.12 gi|557695046|ref|YP_008798100.1| - 1.5e-07 30.6 0.0 2.9e-07 29.6 0.0 1.5 1 1 1 2 2 2 1 Spermine/spermidine synthase Methyltransf_18 PF12847.2 gi|557695046|ref|YP_008798100.1| - 1.8e-07 31.6 0.0 3.1e-07 30.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.10 gi|557695046|ref|YP_008798100.1| - 2.1e-07 30.5 0.0 3.1e-07 29.9 0.0 1.2 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_30 PF05430.6 gi|557695046|ref|YP_008798100.1| - 8.6e-06 25.4 0.0 1.5e-05 24.6 0.0 1.3 1 0 0 1 1 1 1 S-adenosyl-L-methionine-dependent methyltransferase Methyltransf_31 PF13847.1 gi|557695046|ref|YP_008798100.1| - 9e-05 22.0 0.0 0.00013 21.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|557695046|ref|YP_008798100.1| - 0.00035 20.0 0.0 0.0005 19.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_24 PF13578.1 gi|557695046|ref|YP_008798100.1| - 0.002 18.9 0.0 0.0043 17.8 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Met_10 PF02475.11 gi|557695046|ref|YP_008798100.1| - 0.004 16.7 0.0 0.0055 16.3 0.0 1.2 1 0 0 1 1 1 1 Met-10+ like-protein PrmA PF06325.8 gi|557695046|ref|YP_008798100.1| - 0.0059 15.7 0.0 0.0089 15.1 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltrans_SAM PF10672.4 gi|557695046|ref|YP_008798100.1| - 0.0076 15.1 0.0 0.015 14.1 0.0 1.5 1 1 0 1 1 1 1 S-adenosylmethionine-dependent methyltransferase Ubie_methyltran PF01209.13 gi|557695046|ref|YP_008798100.1| - 0.015 14.4 0.0 0.12 11.4 0.0 2.3 2 1 1 3 3 3 0 ubiE/COQ5 methyltransferase family APH_6_hur PF04655.9 gi|557695046|ref|YP_008798100.1| - 0.019 14.1 0.0 0.03 13.4 0.0 1.2 1 0 0 1 1 1 0 Aminoglycoside/hydroxyurea antibiotic resistance kinase Methyltransf_11 PF08241.7 gi|557695046|ref|YP_008798100.1| - 0.03 14.8 0.0 0.077 13.5 0.0 1.7 1 1 0 1 1 1 0 Methyltransferase domain Methyltransf_25 PF13649.1 gi|557695046|ref|YP_008798100.1| - 0.036 14.4 0.0 0.06 13.7 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain PCMT PF01135.14 gi|557695046|ref|YP_008798100.1| - 0.041 13.4 0.0 0.07 12.6 0.0 1.4 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) DUF43 PF01861.11 gi|557695046|ref|YP_008798100.1| - 0.063 12.2 0.0 0.094 11.6 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function DUF43 tRNA-synt_1f PF01921.13 gi|557695047|ref|YP_008798101.1| - 3.4e-100 335.2 0.0 4.6e-100 334.7 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (K) tRNA_anti-codon PF01336.20 gi|557695048|ref|YP_008798102.1| - 1.1e-06 28.3 0.1 1.6e-06 27.8 0.0 1.3 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain NfeD PF01957.13 gi|557695049|ref|YP_008798103.1| - 9.1e-23 80.9 1.2 9.1e-23 80.9 0.8 2.8 3 1 1 4 4 4 1 NfeD-like C-terminal, partner-binding CLP_protease PF00574.18 gi|557695049|ref|YP_008798103.1| - 1.2e-06 28.3 0.1 1.9e-06 27.6 0.1 1.3 1 0 0 1 1 1 1 Clp protease ECH PF00378.15 gi|557695049|ref|YP_008798103.1| - 0.0013 17.9 0.3 0.0049 16.0 0.2 1.7 1 1 0 1 1 1 1 Enoyl-CoA hydratase/isomerase family TMEMspv1-c74-12 PF11044.3 gi|557695049|ref|YP_008798103.1| - 1.5 8.4 3.6 2.4 7.7 0.0 2.4 2 0 0 2 2 2 0 Plectrovirus spv1-c74 ORF 12 transmembrane protein Band_7 PF01145.20 gi|557695050|ref|YP_008798104.1| - 1.6e-33 116.1 5.1 2e-33 115.8 3.5 1.1 1 0 0 1 1 1 1 SPFH domain / Band 7 family Band_7_1 PF13421.1 gi|557695050|ref|YP_008798104.1| - 2.9e-05 23.7 0.1 9.1e-05 22.0 0.1 1.8 2 0 0 2 2 2 1 SPFH domain-Band 7 family Atg14 PF10186.4 gi|557695050|ref|YP_008798104.1| - 0.09 11.7 0.6 0.12 11.2 0.4 1.2 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 DUF4607 PF15380.1 gi|557695050|ref|YP_008798104.1| - 0.15 11.5 0.1 0.21 11.0 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4607) AAA_13 PF13166.1 gi|557695051|ref|YP_008798105.1| - 0.0039 15.7 14.4 0.0039 15.7 10.0 2.8 1 1 2 3 3 3 1 AAA domain Reo_sigmaC PF04582.7 gi|557695051|ref|YP_008798105.1| - 0.0072 15.5 5.9 0.044 12.9 0.1 2.5 1 1 1 2 2 2 1 Reovirus sigma C capsid protein UreF PF01730.11 gi|557695051|ref|YP_008798105.1| - 0.043 13.9 0.7 0.15 12.1 0.3 2.1 2 0 0 2 2 1 0 UreF Rpr2 PF04032.11 gi|557695051|ref|YP_008798105.1| - 0.06 13.2 0.4 0.06 13.2 0.3 2.7 3 1 0 3 3 3 0 RNAse P Rpr2/Rpp21/SNM1 subunit domain DUF948 PF06103.6 gi|557695051|ref|YP_008798105.1| - 0.077 12.8 18.7 0.21 11.4 0.2 5.8 3 2 2 5 5 5 0 Bacterial protein of unknown function (DUF948) RabGAP-TBC PF00566.13 gi|557695051|ref|YP_008798105.1| - 0.078 12.4 0.3 0.19 11.1 0.2 1.7 1 0 0 1 1 1 0 Rab-GTPase-TBC domain WXG100 PF06013.7 gi|557695051|ref|YP_008798105.1| - 0.12 12.4 7.5 4.7 7.2 0.0 4.6 3 2 0 3 3 3 0 Proteins of 100 residues with WXG Spc7 PF08317.6 gi|557695051|ref|YP_008798105.1| - 0.13 10.9 44.0 0.26 9.8 9.9 4.1 1 1 3 4 4 4 0 Spc7 kinetochore protein HGD-D PF06050.8 gi|557695051|ref|YP_008798105.1| - 0.41 9.4 5.2 0.35 9.6 2.4 1.8 1 1 0 1 1 1 0 2-hydroxyglutaryl-CoA dehydratase, D-component IncA PF04156.9 gi|557695051|ref|YP_008798105.1| - 0.59 9.7 54.2 0.043 13.3 15.8 4.2 3 1 1 4 4 4 0 IncA protein Med11 PF10280.4 gi|557695051|ref|YP_008798105.1| - 0.71 9.9 12.5 7.5 6.6 8.7 2.9 1 1 0 1 1 1 0 Mediator complex protein Flagellin_C PF00700.16 gi|557695051|ref|YP_008798105.1| - 0.85 9.8 4.2 3.9 7.6 0.1 3.6 3 0 0 3 3 3 0 Bacterial flagellin C-terminal helical region MCPsignal PF00015.16 gi|557695051|ref|YP_008798105.1| - 1.2 8.6 10.2 0.45 10.0 3.2 2.7 1 1 2 3 3 3 0 Methyl-accepting chemotaxis protein (MCP) signalling domain NPV_P10 PF05531.7 gi|557695051|ref|YP_008798105.1| - 1.6 8.9 17.0 4.7 7.5 0.3 5.4 3 2 3 6 6 6 0 Nucleopolyhedrovirus P10 protein DUF1664 PF07889.7 gi|557695051|ref|YP_008798105.1| - 1.8 8.3 20.9 5.2 6.8 2.9 4.5 3 1 2 5 5 5 0 Protein of unknown function (DUF1664) PilJ PF13675.1 gi|557695051|ref|YP_008798105.1| - 2.4 8.5 15.6 13 6.0 2.3 4.1 2 1 1 3 3 3 0 Type IV pili methyl-accepting chemotaxis transducer N-term Seryl_tRNA_N PF02403.17 gi|557695051|ref|YP_008798105.1| - 2.4 8.1 36.9 0.063 13.3 4.9 4.9 3 1 1 5 5 5 0 Seryl-tRNA synthetase N-terminal domain ATG16 PF08614.6 gi|557695051|ref|YP_008798105.1| - 2.7 7.7 39.6 7.9 6.2 14.8 3.7 2 1 1 3 3 3 0 Autophagy protein 16 (ATG16) DUF972 PF06156.8 gi|557695051|ref|YP_008798105.1| - 3.1 8.1 41.2 0.18 12.1 0.4 5.5 2 1 3 5 5 5 0 Protein of unknown function (DUF972) CDC37_N PF03234.9 gi|557695051|ref|YP_008798105.1| - 3.9 7.7 26.8 1.3 9.3 2.8 3.1 1 1 1 2 2 2 0 Cdc37 N terminal kinase binding DUF2203 PF09969.4 gi|557695051|ref|YP_008798105.1| - 4.5 7.5 30.2 0.7 10.1 0.4 5.0 1 1 3 5 5 5 0 Uncharacterized conserved protein (DUF2203) DUF479 PF04336.7 gi|557695051|ref|YP_008798105.1| - 5.4 7.1 17.9 2.8 8.0 0.0 5.2 3 2 3 6 6 6 0 Protein of unknown function, DUF479 DUF4446 PF14584.1 gi|557695051|ref|YP_008798105.1| - 9.5 6.0 25.3 0.26 11.0 0.9 4.9 2 1 3 5 5 5 0 Protein of unknown function (DUF4446) FliJ PF02050.11 gi|557695051|ref|YP_008798105.1| - 9.9 6.2 40.2 0.72 9.9 9.1 5.5 3 2 3 6 6 6 0 Flagellar FliJ protein Penicillinase_R PF03965.11 gi|557695052|ref|YP_008798106.1| - 0.089 12.8 0.0 0.15 12.1 0.0 1.4 1 0 0 1 1 1 0 Penicillinase repressor DUF1803 PF08820.5 gi|557695052|ref|YP_008798106.1| - 0.099 12.3 0.0 0.13 11.9 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1803) DUF1366 PF07104.6 gi|557695052|ref|YP_008798106.1| - 0.12 11.9 0.2 4.3 6.9 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1366) Hjc PF01870.13 gi|557695053|ref|YP_008798107.1| - 4.5e-18 64.6 0.0 7.8e-18 63.8 0.0 1.4 1 1 0 1 1 1 1 Archaeal holliday junction resolvase (hjc) NERD PF08378.6 gi|557695053|ref|YP_008798107.1| - 0.0014 18.8 0.0 0.0018 18.5 0.0 1.2 1 0 0 1 1 1 1 Nuclease-related domain DUF1272 PF06906.6 gi|557695053|ref|YP_008798107.1| - 0.11 12.2 0.1 0.18 11.6 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1272) DUF3883 PF13020.1 gi|557695053|ref|YP_008798107.1| - 0.15 11.7 0.0 0.26 11.0 0.0 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF3883) HTH_24 PF13412.1 gi|557695054|ref|YP_008798108.1| - 2.5e-15 55.5 0.0 1.3e-13 50.0 0.0 2.4 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.1 gi|557695054|ref|YP_008798108.1| - 3.5e-15 55.2 0.0 6.6e-15 54.3 0.0 1.5 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain AsnC_trans_reg PF01037.16 gi|557695054|ref|YP_008798108.1| - 1.1e-12 47.5 0.1 1.5e-12 47.0 0.0 1.2 1 0 0 1 1 1 1 AsnC family TrmB PF01978.14 gi|557695054|ref|YP_008798108.1| - 8.7e-06 25.3 0.1 0.00033 20.2 0.0 2.4 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.2 gi|557695054|ref|YP_008798108.1| - 3e-05 23.7 0.0 7.8e-05 22.3 0.0 1.7 2 0 0 2 2 1 1 Helix-turn-helix domain HTH_Tnp_ISL3 PF13542.1 gi|557695054|ref|YP_008798108.1| - 4.2e-05 22.6 0.0 0.0071 15.5 0.0 2.4 2 0 0 2 2 2 1 Helix-turn-helix domain of transposase family ISL3 HTH_DeoR PF08220.7 gi|557695054|ref|YP_008798108.1| - 6.1e-05 22.4 0.3 0.00029 20.3 0.0 2.1 3 0 0 3 3 2 1 DeoR-like helix-turn-helix domain HTH_5 PF01022.15 gi|557695054|ref|YP_008798108.1| - 0.00012 21.6 0.0 0.001 18.7 0.0 2.4 3 0 0 3 3 3 1 Bacterial regulatory protein, arsR family FeoC PF09012.5 gi|557695054|ref|YP_008798108.1| - 0.00013 21.6 0.0 0.00064 19.3 0.0 2.0 2 0 0 2 2 2 1 FeoC like transcriptional regulator MarR_2 PF12802.2 gi|557695054|ref|YP_008798108.1| - 0.00019 21.0 0.1 0.0058 16.2 0.0 2.2 2 0 0 2 2 2 1 MarR family HTH_11 PF08279.7 gi|557695054|ref|YP_008798108.1| - 0.0013 18.3 1.3 0.0048 16.5 0.0 2.4 3 0 0 3 3 3 1 HTH domain HTH_23 PF13384.1 gi|557695054|ref|YP_008798108.1| - 0.002 17.7 0.1 0.022 14.3 0.0 2.5 3 0 0 3 3 3 1 Homeodomain-like domain HTH_IclR PF09339.5 gi|557695054|ref|YP_008798108.1| - 0.0027 17.2 0.0 0.032 13.8 0.0 2.4 2 0 0 2 2 2 1 IclR helix-turn-helix domain MarR PF01047.17 gi|557695054|ref|YP_008798108.1| - 0.0027 17.3 0.1 0.061 13.0 0.0 2.3 2 0 0 2 2 2 1 MarR family Sigma70_r4 PF04545.11 gi|557695054|ref|YP_008798108.1| - 0.0031 16.7 0.1 0.049 12.9 0.0 2.5 3 0 0 3 3 3 1 Sigma-70, region 4 HTH_38 PF13936.1 gi|557695054|ref|YP_008798108.1| - 0.0033 16.9 0.1 0.042 13.4 0.0 2.4 3 0 0 3 3 2 1 Helix-turn-helix domain Sigma70_r4_2 PF08281.7 gi|557695054|ref|YP_008798108.1| - 0.004 16.5 0.0 0.0096 15.3 0.0 1.7 1 0 0 1 1 1 1 Sigma-70, region 4 NapD PF03927.8 gi|557695054|ref|YP_008798108.1| - 0.0059 16.4 0.0 0.0094 15.7 0.0 1.2 1 0 0 1 1 1 1 NapD protein ACT_4 PF13291.1 gi|557695054|ref|YP_008798108.1| - 0.0061 16.8 2.3 0.12 12.7 0.1 2.7 2 1 0 2 2 2 1 ACT domain HTH_Mga PF08280.6 gi|557695054|ref|YP_008798108.1| - 0.0071 16.0 0.0 0.019 14.7 0.0 1.7 1 0 0 1 1 1 1 M protein trans-acting positive regulator (MGA) HTH domain HTH_27 PF13463.1 gi|557695054|ref|YP_008798108.1| - 0.01 16.1 0.2 1.9 8.8 0.0 2.9 3 0 0 3 3 3 0 Winged helix DNA-binding domain TFIIE_alpha PF02002.12 gi|557695054|ref|YP_008798108.1| - 0.012 15.1 0.7 0.45 10.0 0.0 2.3 1 1 1 2 2 2 0 TFIIE alpha subunit Mga PF05043.8 gi|557695054|ref|YP_008798108.1| - 0.014 15.6 0.0 0.059 13.6 0.0 2.0 2 0 0 2 2 2 0 Mga helix-turn-helix domain CENP-B_N PF04218.8 gi|557695054|ref|YP_008798108.1| - 0.016 14.5 0.1 0.62 9.5 0.0 2.3 2 0 0 2 2 2 0 CENP-B N-terminal DNA-binding domain APG17 PF04108.7 gi|557695054|ref|YP_008798108.1| - 0.019 13.7 0.1 0.023 13.5 0.0 1.0 1 0 0 1 1 1 0 Autophagy protein Apg17 GerE PF00196.14 gi|557695054|ref|YP_008798108.1| - 0.028 13.7 0.1 0.14 11.5 0.0 2.1 3 0 0 3 3 3 0 Bacterial regulatory proteins, luxR family HTH_29 PF13551.1 gi|557695054|ref|YP_008798108.1| - 0.029 14.4 0.0 8 6.6 0.0 2.9 1 1 2 3 3 3 0 Winged helix-turn helix HTH_36 PF13730.1 gi|557695054|ref|YP_008798108.1| - 0.034 14.2 0.0 10 6.3 0.0 2.4 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_28 PF13518.1 gi|557695054|ref|YP_008798108.1| - 0.04 13.9 0.0 0.72 9.9 0.0 2.6 2 1 0 2 2 2 0 Helix-turn-helix domain FaeA PF04703.7 gi|557695054|ref|YP_008798108.1| - 0.049 13.7 0.0 0.14 12.3 0.0 1.7 1 0 0 1 1 1 0 FaeA-like protein DUF4423 PF14394.1 gi|557695054|ref|YP_008798108.1| - 0.053 13.0 0.0 1.2 8.6 0.0 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF4423) HTH_Crp_2 PF13545.1 gi|557695054|ref|YP_008798108.1| - 0.056 13.2 0.0 5.3 6.9 0.0 2.3 1 1 1 2 2 2 0 Crp-like helix-turn-helix domain Rrf2 PF02082.15 gi|557695054|ref|YP_008798108.1| - 0.058 13.5 0.1 1.2 9.2 0.0 2.6 2 1 1 3 3 3 0 Transcriptional regulator DUF2042 PF09743.4 gi|557695054|ref|YP_008798108.1| - 0.066 12.5 0.1 0.21 10.8 0.1 1.8 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2042) HTH_30 PF13556.1 gi|557695054|ref|YP_008798108.1| - 0.079 12.5 0.0 0.29 10.7 0.0 2.0 2 0 0 2 2 1 0 PucR C-terminal helix-turn-helix domain DUF2250 PF10007.4 gi|557695054|ref|YP_008798108.1| - 0.097 12.5 0.1 2.7 7.9 0.0 2.5 1 1 2 3 3 3 0 Uncharacterized protein conserved in archaea (DUF2250) DUF4089 PF13318.1 gi|557695054|ref|YP_008798108.1| - 0.13 12.5 0.1 0.29 11.4 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF4089) PaaX PF07848.7 gi|557695054|ref|YP_008798108.1| - 0.16 11.9 0.3 1.8 8.6 0.1 2.3 2 0 0 2 2 2 0 PaaX-like protein SHMT PF00464.14 gi|557695055|ref|YP_008798109.1| - 7.3e-36 123.3 0.0 1.7e-34 118.8 0.0 2.0 1 1 0 1 1 1 1 Serine hydroxymethyltransferase Beta_elim_lyase PF01212.16 gi|557695055|ref|YP_008798109.1| - 6.3e-06 25.5 0.0 9.1e-06 25.0 0.0 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.12 gi|557695055|ref|YP_008798109.1| - 0.00046 19.3 0.1 0.0009 18.3 0.1 1.5 1 1 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family SelA PF03841.8 gi|557695055|ref|YP_008798109.1| - 0.00072 18.4 0.0 0.001 17.8 0.0 1.2 1 0 0 1 1 1 1 L-seryl-tRNA selenium transferase Cys_Met_Meta_PP PF01053.15 gi|557695055|ref|YP_008798109.1| - 0.00086 17.6 0.0 0.0013 17.1 0.0 1.3 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_1_2 PF00155.16 gi|557695055|ref|YP_008798109.1| - 0.001 18.0 0.0 0.0022 17.0 0.0 1.6 1 1 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.14 gi|557695055|ref|YP_008798109.1| - 0.0032 16.2 0.0 0.0046 15.7 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V GHMP_kinases_N PF00288.21 gi|557695056|ref|YP_008798110.1| - 0.0064 16.5 0.7 0.012 15.6 0.5 1.5 1 0 0 1 1 1 1 GHMP kinases N terminal domain Abhydrolase_6 PF12697.2 gi|557695056|ref|YP_008798110.1| - 0.043 13.6 0.3 0.075 12.8 0.1 1.5 2 0 0 2 2 2 0 Alpha/beta hydrolase family Antitoxin-MazE PF04014.13 gi|557695057|ref|YP_008798111.1| - 0.0017 17.9 0.2 0.0028 17.3 0.1 1.4 1 0 0 1 1 1 1 Antidote-toxin recognition MazE HTH_45 PF14947.1 gi|557695058|ref|YP_008798112.1| - 1.6e-29 101.5 1.1 1.8e-29 101.3 0.8 1.0 1 0 0 1 1 1 1 Winged helix-turn-helix DUF4364 PF14277.1 gi|557695058|ref|YP_008798112.1| - 0.00034 20.2 0.2 0.0004 20.0 0.2 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4364) TrmB PF01978.14 gi|557695058|ref|YP_008798112.1| - 0.0015 18.1 0.2 0.002 17.7 0.1 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB DUF1694 PF07997.6 gi|557695058|ref|YP_008798112.1| - 0.039 13.8 0.1 0.042 13.7 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1694) Rio2_N PF09202.6 gi|557695058|ref|YP_008798112.1| - 0.053 13.5 0.1 0.068 13.2 0.0 1.2 1 0 0 1 1 1 0 Rio2, N-terminal HTH_27 PF13463.1 gi|557695058|ref|YP_008798112.1| - 0.07 13.4 0.0 0.087 13.1 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_12 PF08461.5 gi|557695058|ref|YP_008798112.1| - 0.087 12.5 0.3 0.15 11.8 0.2 1.6 1 1 0 1 1 1 0 Ribonuclease R winged-helix domain DUF3895 PF13034.1 gi|557695058|ref|YP_008798112.1| - 0.1 12.0 0.2 0.19 11.2 0.1 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF3895) Laminin_II PF06009.7 gi|557695058|ref|YP_008798112.1| - 0.13 12.0 0.3 0.14 11.8 0.2 1.1 1 0 0 1 1 1 0 Laminin Domain II Cation_ATPase_N PF00690.21 gi|557695059|ref|YP_008798113.1| - 0.51 9.8 2.6 1.2 8.6 1.8 1.6 1 0 0 1 1 1 0 Cation transporter/ATPase, N-terminus ACC_epsilon PF13822.1 gi|557695060|ref|YP_008798114.1| - 0.0096 16.2 0.3 0.018 15.3 0.2 1.5 1 0 0 1 1 1 1 Acyl-CoA carboxylase epsilon subunit Big_5 PF13205.1 gi|557695060|ref|YP_008798114.1| - 0.09 13.3 2.6 0.21 12.2 1.8 1.7 1 1 0 1 1 1 0 Bacterial Ig-like domain Cadherin-like PF12733.2 gi|557695060|ref|YP_008798114.1| - 0.093 13.0 0.1 0.14 12.4 0.1 1.3 1 0 0 1 1 1 0 Cadherin-like beta sandwich domain TPP_enzyme_C PF02775.16 gi|557695061|ref|YP_008798115.1| - 1.3e-30 105.9 0.1 2.6e-30 105.0 0.0 1.4 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PFO_beta_C PF12367.3 gi|557695061|ref|YP_008798115.1| - 3.1e-08 33.4 0.0 2.7e-06 27.1 0.0 2.5 2 1 0 2 2 2 1 Pyruvate ferredoxin oxidoreductase beta subunit C terminal Cas_csx3 PF09620.5 gi|557695061|ref|YP_008798115.1| - 0.09 12.5 0.0 0.18 11.6 0.0 1.5 1 0 0 1 1 1 0 CRISPR-associated protein (Cas_csx3) ATP13 PF12921.2 gi|557695061|ref|YP_008798115.1| - 0.1 11.9 0.0 0.43 9.9 0.0 1.8 2 0 0 2 2 2 0 Mitochondrial ATPase expression POR_N PF01855.14 gi|557695062|ref|YP_008798116.1| - 6.9e-61 205.6 0.0 1e-60 205.1 0.0 1.3 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg POR PF01558.13 gi|557695062|ref|YP_008798116.1| - 2.9e-31 108.7 0.1 5.5e-31 107.7 0.1 1.4 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase TPP_enzyme_N PF02776.13 gi|557695062|ref|YP_008798116.1| - 1.2e-05 24.8 0.0 2.5e-05 23.8 0.0 1.4 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Transketolase_C PF02780.15 gi|557695062|ref|YP_008798116.1| - 0.00022 21.1 0.0 0.00054 19.8 0.0 1.6 1 0 0 1 1 1 1 Transketolase, C-terminal domain HSP20 PF00011.16 gi|557695063|ref|YP_008798117.1| - 4.3e-13 49.0 4.2 1e-11 44.6 2.9 2.3 1 1 0 1 1 1 1 Hsp20/alpha crystallin family GvpH PF05455.6 gi|557695063|ref|YP_008798117.1| - 9.7e-06 25.3 0.0 1.3e-05 24.8 0.0 1.2 1 0 0 1 1 1 1 GvpH CS PF04969.11 gi|557695063|ref|YP_008798117.1| - 0.00018 21.9 1.0 0.00027 21.4 0.7 1.2 1 0 0 1 1 1 1 CS domain PIH1 PF08190.7 gi|557695063|ref|YP_008798117.1| - 0.002 17.6 0.1 0.0028 17.1 0.1 1.1 1 0 0 1 1 1 1 pre-RNA processing PIH1/Nop17 DUF2807 PF10988.3 gi|557695063|ref|YP_008798117.1| - 0.034 13.6 0.5 0.044 13.3 0.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2807) PrgU PF09627.5 gi|557695063|ref|YP_008798117.1| - 0.059 12.9 0.1 0.094 12.3 0.0 1.4 1 0 0 1 1 1 0 PrgU-like protein DPCD PF14913.1 gi|557695063|ref|YP_008798117.1| - 0.088 11.9 0.1 0.088 11.9 0.1 1.8 2 0 0 2 2 2 0 DPCD protein family Glycos_transf_2 PF00535.21 gi|557695064|ref|YP_008798118.1| - 3.5e-25 88.6 0.0 5.3e-25 88.0 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|557695064|ref|YP_008798118.1| - 1.6e-20 73.9 0.3 2.4e-20 73.3 0.2 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_transf_21 PF13506.1 gi|557695064|ref|YP_008798118.1| - 4.3e-14 52.1 0.4 1e-13 50.9 0.0 1.7 2 0 0 2 2 2 1 Glycosyl transferase family 21 Glyco_tranf_2_4 PF13704.1 gi|557695064|ref|YP_008798118.1| - 2e-07 31.2 0.1 4.4e-07 30.1 0.1 1.6 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_2 PF10111.4 gi|557695064|ref|YP_008798118.1| - 1.1e-05 24.7 0.0 2.6e-05 23.4 0.0 1.7 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.1 gi|557695064|ref|YP_008798118.1| - 0.001 18.7 6.2 0.002 17.8 4.3 1.5 1 1 0 1 1 1 1 Glycosyl transferase family group 2 Methyltransf_26 PF13659.1 gi|557695065|ref|YP_008798119.1| - 1.5e-08 34.6 0.0 2.8e-08 33.7 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain N6_N4_Mtase PF01555.13 gi|557695065|ref|YP_008798119.1| - 9.5e-07 28.5 0.0 0.00045 19.7 0.0 2.3 2 0 0 2 2 2 2 DNA methylase Methyltransf_11 PF08241.7 gi|557695065|ref|YP_008798119.1| - 0.00097 19.5 0.0 0.084 13.3 0.0 2.7 2 0 0 2 2 2 1 Methyltransferase domain UPF0020 PF01170.13 gi|557695065|ref|YP_008798119.1| - 0.0029 17.2 0.0 0.0048 16.5 0.0 1.3 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 DJ-1_PfpI PF01965.19 gi|557695066|ref|YP_008798120.1| - 3.4e-42 143.3 0.0 3.9e-42 143.1 0.0 1.0 1 0 0 1 1 1 1 DJ-1/PfpI family DUF4066 PF13278.1 gi|557695066|ref|YP_008798120.1| - 1.9e-19 69.5 0.0 2.4e-19 69.1 0.0 1.1 1 0 0 1 1 1 1 Putative amidotransferase GATase_3 PF07685.9 gi|557695066|ref|YP_008798120.1| - 0.0022 17.6 0.0 0.003 17.1 0.0 1.2 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain GATase PF00117.23 gi|557695066|ref|YP_008798120.1| - 0.0035 16.8 0.0 0.0039 16.6 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|557695066|ref|YP_008798120.1| - 0.03 13.7 0.0 0.041 13.3 0.0 1.4 1 1 0 1 1 1 0 Peptidase C26 GATase_5 PF13507.1 gi|557695066|ref|YP_008798120.1| - 0.031 13.1 0.0 0.039 12.8 0.0 1.2 1 0 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain DUF59 PF01883.14 gi|557695067|ref|YP_008798121.1| - 2.5e-18 65.8 0.7 3.4e-18 65.4 0.5 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF59 GMP_synt_C PF00958.17 gi|557695067|ref|YP_008798121.1| - 0.09 12.4 0.1 0.15 11.7 0.0 1.4 1 0 0 1 1 1 0 GMP synthase C terminal domain tRNA-synt_1 PF00133.17 gi|557695068|ref|YP_008798122.1| - 9.7e-116 387.1 0.0 1.3e-114 383.3 0.0 2.0 1 1 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.8 gi|557695068|ref|YP_008798122.1| - 3.5e-32 111.2 0.1 6.4e-32 110.4 0.0 1.5 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.6 gi|557695068|ref|YP_008798122.1| - 3.6e-28 98.3 0.0 1.8e-13 49.9 0.0 4.2 3 2 1 4 4 4 3 tRNA synthetases class I (M) DZR PF12773.2 gi|557695068|ref|YP_008798122.1| - 0.0001 22.0 0.5 0.043 13.6 0.2 2.5 2 0 0 2 2 2 1 Double zinc ribbon tRNA-synt_1_2 PF13603.1 gi|557695068|ref|YP_008798122.1| - 0.00055 19.2 0.0 0.0016 17.7 0.0 1.7 1 0 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 zinc_ribbon_2 PF13240.1 gi|557695068|ref|YP_008798122.1| - 0.0016 17.8 5.4 0.11 11.9 1.3 2.7 2 0 0 2 2 2 2 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|557695068|ref|YP_008798122.1| - 0.0021 17.2 7.2 0.45 9.7 2.4 3.0 2 1 1 3 3 3 2 zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|557695068|ref|YP_008798122.1| - 0.0043 16.3 1.4 2.8 7.3 0.2 3.3 3 0 0 3 3 3 1 TFIIB zinc-binding tRNA-synt_1f PF01921.13 gi|557695068|ref|YP_008798122.1| - 0.027 13.1 0.0 0.12 11.0 0.0 1.9 2 0 0 2 2 2 0 tRNA synthetases class I (K) zf-TFIIB PF13453.1 gi|557695068|ref|YP_008798122.1| - 0.034 13.3 1.5 6.5 6.0 0.0 3.4 3 0 0 3 3 3 0 Transcription factor zinc-finger BIR PF00653.16 gi|557695068|ref|YP_008798122.1| - 0.034 14.5 0.0 0.74 10.2 0.0 2.8 2 0 0 2 2 2 0 Inhibitor of Apoptosis domain tRNA-synt_1e PF01406.14 gi|557695068|ref|YP_008798122.1| - 0.044 12.8 0.0 0.43 9.6 0.0 2.2 2 0 0 2 2 2 0 tRNA synthetases class I (C) catalytic domain Zn_ribbon_2 PF12674.2 gi|557695068|ref|YP_008798122.1| - 0.15 12.4 0.3 36 4.8 0.1 2.9 3 0 0 3 3 2 0 Putative zinc ribbon domain HypA PF01155.14 gi|557695068|ref|YP_008798122.1| - 0.19 11.4 0.3 1.1 9.0 0.1 2.1 2 0 0 2 2 2 0 Hydrogenase expression/synthesis hypA family zf-ISL3 PF14690.1 gi|557695068|ref|YP_008798122.1| - 0.21 11.6 4.2 1.7 8.7 0.0 3.1 3 0 0 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Auto_anti-p27 PF06677.7 gi|557695068|ref|YP_008798122.1| - 0.31 10.8 3.3 39 4.1 0.0 3.4 3 0 0 3 3 3 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Nudix_N_2 PF14803.1 gi|557695068|ref|YP_008798122.1| - 0.66 9.7 6.8 13 5.5 0.0 3.4 2 1 0 2 2 2 0 Nudix N-terminal Zn-ribbon_8 PF09723.5 gi|557695068|ref|YP_008798122.1| - 0.71 9.8 4.5 1.7 8.6 1.4 2.6 2 1 0 2 2 2 0 Zinc ribbon domain Lar_restr_allev PF14354.1 gi|557695068|ref|YP_008798122.1| - 0.91 9.8 3.6 44 4.4 0.2 3.0 2 1 1 3 3 3 0 Restriction alleviation protein Lar DNA_ligase_ZBD PF03119.11 gi|557695068|ref|YP_008798122.1| - 1.6 8.4 4.8 22 4.8 0.0 3.2 3 0 0 3 3 3 0 NAD-dependent DNA ligase C4 zinc finger domain RRN7 PF11781.3 gi|557695068|ref|YP_008798122.1| - 4.5 6.8 10.3 4.1 7.0 0.2 3.4 4 0 0 4 4 3 0 RNA polymerase I-specific transcription initiation factor Rrn7 DUF35_N PF12172.3 gi|557695068|ref|YP_008798122.1| - 5.1 7.1 5.8 20 5.2 0.3 3.2 3 0 0 3 3 3 0 Rubredoxin-like zinc ribbon domain (DUF35_N) NUDIX PF00293.23 gi|557695069|ref|YP_008798123.1| - 1.4e-16 60.3 0.1 1.7e-16 60.0 0.0 1.2 1 0 0 1 1 1 1 NUDIX domain BphX PF06139.7 gi|557695069|ref|YP_008798123.1| - 0.079 12.5 0.0 0.098 12.2 0.0 1.4 1 1 0 1 1 1 0 BphX-like HTH_20 PF12840.2 gi|557695071|ref|YP_008798125.1| - 1e-08 34.8 0.0 2.2e-08 33.7 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|557695071|ref|YP_008798125.1| - 2.1e-07 30.4 0.0 9.2e-07 28.4 0.0 2.0 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.1 gi|557695071|ref|YP_008798125.1| - 7.9e-06 25.1 0.0 1.6e-05 24.1 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_34 PF13601.1 gi|557695071|ref|YP_008798125.1| - 0.0039 17.1 0.1 0.011 15.8 0.0 1.8 1 1 0 1 1 1 1 Winged helix DNA-binding domain HTH_Mga PF08280.6 gi|557695071|ref|YP_008798125.1| - 0.02 14.6 0.0 0.04 13.6 0.0 1.5 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain HTH_11 PF08279.7 gi|557695071|ref|YP_008798125.1| - 0.042 13.4 0.0 0.082 12.5 0.0 1.5 1 0 0 1 1 1 0 HTH domain Yip1 PF04893.12 gi|557695071|ref|YP_008798125.1| - 0.32 10.4 22.7 0.51 9.8 15.7 1.2 1 0 0 1 1 1 0 Yip1 domain DUF2755 PF10954.3 gi|557695071|ref|YP_008798125.1| - 6.2 6.5 8.7 0.6 9.8 1.2 2.8 3 2 1 4 4 4 0 Protein of unknown function (DUF2755) UbiA PF01040.13 gi|557695072|ref|YP_008798126.1| - 2.6e-34 118.6 30.2 3.2e-34 118.3 21.0 1.1 1 0 0 1 1 1 1 UbiA prenyltransferase family SfsA PF03749.8 gi|557695073|ref|YP_008798127.1| - 2.1e-46 158.0 0.0 2.6e-46 157.8 0.0 1.0 1 0 0 1 1 1 1 Sugar fermentation stimulation protein Endonuc_Holl PF10107.4 gi|557695073|ref|YP_008798127.1| - 0.08 12.6 0.0 0.12 12.0 0.0 1.2 1 0 0 1 1 1 0 Endonuclease related to archaeal Holliday junction resolvase RecO_N_2 PF13114.1 gi|557695073|ref|YP_008798127.1| - 0.1 12.3 0.0 0.2 11.4 0.0 1.4 1 0 0 1 1 1 0 RecO N terminal Citrate_synt PF00285.16 gi|557695074|ref|YP_008798128.1| - 7.3e-136 452.5 0.0 8.2e-136 452.3 0.0 1.0 1 0 0 1 1 1 1 Citrate synthase AMP-binding PF00501.23 gi|557695075|ref|YP_008798129.1| - 1.3e-101 340.0 0.0 1.8e-101 339.5 0.0 1.2 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|557695075|ref|YP_008798129.1| - 4.3e-15 56.4 2.4 1.2e-14 54.9 0.8 2.4 3 0 0 3 3 3 1 AMP-binding enzyme C-terminal domain Met_10 PF02475.11 gi|557695077|ref|YP_008798131.1| - 1.1e-49 168.7 0.0 1.5e-49 168.3 0.0 1.1 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_26 PF13659.1 gi|557695077|ref|YP_008798131.1| - 4.6e-08 33.0 0.0 6.8e-08 32.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_15 PF09445.5 gi|557695077|ref|YP_008798131.1| - 5e-07 29.4 0.0 8.1e-07 28.7 0.0 1.3 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase DNA_methylase PF00145.12 gi|557695077|ref|YP_008798131.1| - 2e-05 23.8 0.0 3.1e-05 23.2 0.0 1.2 1 0 0 1 1 1 1 C-5 cytosine-specific DNA methylase Methyltransf_18 PF12847.2 gi|557695077|ref|YP_008798131.1| - 2.5e-05 24.8 0.0 4.5e-05 23.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.10 gi|557695077|ref|YP_008798131.1| - 6.6e-05 22.3 0.0 0.00011 21.6 0.0 1.4 1 0 0 1 1 1 1 Conserved hypothetical protein 95 MTS PF05175.9 gi|557695077|ref|YP_008798131.1| - 0.00019 20.8 0.0 0.00031 20.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain N6_N4_Mtase PF01555.13 gi|557695077|ref|YP_008798131.1| - 0.00028 20.4 0.0 0.0011 18.5 0.0 1.8 2 0 0 2 2 2 1 DNA methylase PrmA PF06325.8 gi|557695077|ref|YP_008798131.1| - 0.00054 19.1 0.0 0.0008 18.6 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) RrnaAD PF00398.15 gi|557695077|ref|YP_008798131.1| - 0.01 14.8 0.0 0.017 14.1 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase Methyltransf_31 PF13847.1 gi|557695077|ref|YP_008798131.1| - 0.013 15.1 0.0 0.018 14.6 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_21 PF05050.7 gi|557695077|ref|YP_008798131.1| - 0.041 13.8 0.0 0.063 13.2 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase FkbM domain TRM PF02005.11 gi|557695077|ref|YP_008798131.1| - 0.076 11.9 0.0 0.094 11.6 0.0 1.2 1 0 0 1 1 1 0 N2,N2-dimethylguanosine tRNA methyltransferase Smoothelin PF12510.3 gi|557695077|ref|YP_008798131.1| - 0.27 11.1 2.3 0.59 10.0 0.8 2.1 2 0 0 2 2 2 0 Smoothelin cytoskeleton protein Ribosomal_S25 PF03297.10 gi|557695078|ref|YP_008798132.1| - 1.6e-11 44.1 1.2 1.6e-11 44.1 0.8 2.0 1 1 1 2 2 2 1 S25 ribosomal protein FeoC PF09012.5 gi|557695078|ref|YP_008798132.1| - 7.1e-05 22.4 0.0 0.00011 21.8 0.0 1.3 1 0 0 1 1 1 1 FeoC like transcriptional regulator MarR_2 PF12802.2 gi|557695078|ref|YP_008798132.1| - 0.00012 21.6 0.1 0.00019 20.9 0.1 1.4 1 0 0 1 1 1 1 MarR family TrmB PF01978.14 gi|557695078|ref|YP_008798132.1| - 0.0033 17.1 0.3 0.0052 16.4 0.2 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB DUF2250 PF10007.4 gi|557695078|ref|YP_008798132.1| - 0.0065 16.3 0.1 0.016 15.1 0.1 1.9 1 1 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) Rrf2 PF02082.15 gi|557695078|ref|YP_008798132.1| - 0.007 16.4 0.1 0.011 15.7 0.1 1.3 1 0 0 1 1 1 1 Transcriptional regulator Penicillinase_R PF03965.11 gi|557695078|ref|YP_008798132.1| - 0.024 14.6 0.1 0.034 14.2 0.1 1.3 1 0 0 1 1 1 0 Penicillinase repressor EAP30 PF04157.11 gi|557695078|ref|YP_008798132.1| - 0.047 12.8 0.0 0.067 12.3 0.0 1.3 1 0 0 1 1 1 0 EAP30/Vps36 family HTH_24 PF13412.1 gi|557695078|ref|YP_008798132.1| - 0.054 12.8 0.0 0.084 12.2 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Cyclophil_like PF04126.8 gi|557695079|ref|YP_008798133.1| - 6.3e-12 45.1 0.0 7.4e-12 44.9 0.0 1.2 1 0 0 1 1 1 1 Cyclophilin-like DUF3830 PF12903.2 gi|557695079|ref|YP_008798133.1| - 0.037 13.4 0.0 0.044 13.1 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3830) PhosphMutase PF10143.4 gi|557695080|ref|YP_008798134.1| - 3e-63 212.5 0.0 9.8e-63 210.8 0.0 1.7 2 0 0 2 2 2 1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase Metalloenzyme PF01676.13 gi|557695080|ref|YP_008798134.1| - 2e-46 158.4 0.0 2.2e-46 158.2 0.0 1.0 1 0 0 1 1 1 1 Metalloenzyme superfamily Phosphodiest PF01663.17 gi|557695080|ref|YP_008798134.1| - 8.2e-05 22.0 0.1 0.00019 20.8 0.0 1.4 1 1 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase DUF3538 PF12057.3 gi|557695080|ref|YP_008798134.1| - 0.055 13.0 0.1 0.81 9.3 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF3538) Sulfatase PF00884.18 gi|557695080|ref|YP_008798134.1| - 0.17 11.0 0.0 0.45 9.6 0.0 1.6 2 0 0 2 2 2 0 Sulfatase Rad51 PF08423.6 gi|557695081|ref|YP_008798135.1| - 1.1e-89 299.8 0.0 1.3e-89 299.4 0.0 1.1 1 0 0 1 1 1 1 Rad51 AAA_25 PF13481.1 gi|557695081|ref|YP_008798135.1| - 3.6e-13 49.3 0.0 6e-13 48.6 0.0 1.3 1 0 0 1 1 1 1 AAA domain HHH_5 PF14520.1 gi|557695081|ref|YP_008798135.1| - 3.9e-12 46.1 0.2 3.9e-12 46.1 0.1 2.0 3 0 0 3 3 3 1 Helix-hairpin-helix domain KaiC PF06745.8 gi|557695081|ref|YP_008798135.1| - 1.6e-11 43.8 0.0 2.5e-11 43.1 0.0 1.4 1 0 0 1 1 1 1 KaiC RecA PF00154.16 gi|557695081|ref|YP_008798135.1| - 1.7e-09 37.1 0.3 5.7e-09 35.4 0.0 1.8 1 1 1 2 2 2 1 recA bacterial DNA recombination protein AAA_22 PF13401.1 gi|557695081|ref|YP_008798135.1| - 0.0034 17.5 0.0 0.0065 16.6 0.0 1.5 1 0 0 1 1 1 1 AAA domain HHH PF00633.18 gi|557695081|ref|YP_008798135.1| - 0.0097 15.5 0.0 0.69 9.7 0.0 2.7 2 0 0 2 2 2 1 Helix-hairpin-helix motif GalP_UDP_tr_C PF02744.12 gi|557695081|ref|YP_008798135.1| - 0.01 15.3 0.1 0.085 12.3 0.1 2.4 1 1 1 2 2 2 0 Galactose-1-phosphate uridyl transferase, C-terminal domain Cdd1 PF11731.3 gi|557695081|ref|YP_008798135.1| - 0.012 15.5 0.0 0.022 14.6 0.0 1.5 1 0 0 1 1 1 0 Pathogenicity locus IMS_HHH PF11798.3 gi|557695081|ref|YP_008798135.1| - 0.027 14.5 0.0 0.082 12.9 0.0 1.9 1 0 0 1 1 1 0 IMS family HHH motif IL12 PF03039.9 gi|557695081|ref|YP_008798135.1| - 0.11 11.6 0.2 0.16 11.0 0.2 1.2 1 0 0 1 1 1 0 Interleukin-12 alpha subunit Pribosyltran PF00156.22 gi|557695081|ref|YP_008798135.1| - 0.27 10.9 2.2 2.6 7.8 0.1 2.6 2 1 0 2 2 2 0 Phosphoribosyl transferase domain TPR_19 PF14559.1 gi|557695082|ref|YP_008798136.1| - 0.0049 17.1 0.0 0.0098 16.2 0.0 1.5 1 0 0 1 1 1 1 Tetratricopeptide repeat TPR_14 PF13428.1 gi|557695082|ref|YP_008798136.1| - 0.03 14.9 0.1 0.064 13.9 0.0 1.5 1 0 0 1 1 1 0 Tetratricopeptide repeat TPR_6 PF13174.1 gi|557695082|ref|YP_008798136.1| - 0.038 14.4 0.1 0.084 13.3 0.0 1.7 1 0 0 1 1 1 0 Tetratricopeptide repeat TPR_16 PF13432.1 gi|557695082|ref|YP_008798136.1| - 0.12 13.0 0.0 0.21 12.2 0.0 1.4 1 0 0 1 1 1 0 Tetratricopeptide repeat DNA_primase_lrg PF04104.9 gi|557695082|ref|YP_008798136.1| - 0.13 11.5 0.3 0.16 11.1 0.2 1.1 1 0 0 1 1 1 0 Eukaryotic and archaeal DNA primase, large subunit Rab5ip PF07019.7 gi|557695083|ref|YP_008798137.1| - 0.0012 18.9 4.2 0.0014 18.6 2.9 1.1 1 0 0 1 1 1 1 Rab5-interacting protein (Rab5ip) NfeD PF01957.13 gi|557695083|ref|YP_008798137.1| - 0.034 14.2 0.5 0.041 14.0 0.4 1.1 1 0 0 1 1 1 0 NfeD-like C-terminal, partner-binding SieB PF14163.1 gi|557695083|ref|YP_008798137.1| - 0.041 13.4 0.1 0.054 13.0 0.1 1.1 1 0 0 1 1 1 0 Superinfection exclusion protein B CbtA PF09490.5 gi|557695083|ref|YP_008798137.1| - 0.078 12.2 2.4 0.19 11.0 0.1 1.9 1 1 1 2 2 2 0 Probable cobalt transporter subunit (CbtA) Sec62 PF03839.11 gi|557695083|ref|YP_008798137.1| - 0.15 11.4 3.2 0.19 11.1 2.2 1.1 1 0 0 1 1 1 0 Translocation protein Sec62 RseC_MucC PF04246.7 gi|557695083|ref|YP_008798137.1| - 0.2 11.1 1.1 0.22 11.0 0.2 1.5 1 1 1 2 2 2 0 Positive regulator of sigma(E), RseC/MucC FbpA PF05833.6 gi|557695084|ref|YP_008798138.1| - 3.4e-44 151.1 0.0 5.1e-44 150.5 0.0 1.1 1 0 0 1 1 1 1 Fibronectin-binding protein A N-terminus (FbpA) DUF814 PF05670.8 gi|557695084|ref|YP_008798138.1| - 8.7e-19 67.2 0.0 2.2e-18 65.9 0.0 1.7 2 0 0 2 2 2 1 Domain of unknown function (DUF814) Ribosomal_S13 PF00416.17 gi|557695084|ref|YP_008798138.1| - 1.6e-05 25.3 0.0 5.5e-05 23.5 0.0 2.0 1 1 0 1 1 1 1 Ribosomal protein S13/S18 MIase PF02426.11 gi|557695084|ref|YP_008798138.1| - 0.076 12.8 0.0 0.3 10.9 0.0 2.0 1 0 0 1 1 1 0 Muconolactone delta-isomerase zf-CpG_bind_C PF12269.3 gi|557695084|ref|YP_008798138.1| - 0.098 12.1 0.8 0.54 9.6 0.1 2.1 2 0 0 2 2 2 0 CpG binding protein zinc finger C terminal domain Prefoldin_2 PF01920.15 gi|557695084|ref|YP_008798138.1| - 0.13 12.0 4.3 0.1 12.3 0.2 2.5 2 0 0 2 2 2 0 Prefoldin subunit Lge1 PF11488.3 gi|557695084|ref|YP_008798138.1| - 2.2 8.5 6.2 0.9 9.7 0.2 2.8 2 1 0 2 2 2 0 Transcriptional regulatory protein LGE1 Seryl_tRNA_N PF02403.17 gi|557695084|ref|YP_008798138.1| - 8.5 6.4 8.6 6.9 6.7 0.1 3.1 4 0 0 4 4 4 0 Seryl-tRNA synthetase N-terminal domain CBS PF00571.23 gi|557695085|ref|YP_008798139.1| - 7e-29 99.3 5.0 1.6e-14 53.3 0.3 2.2 2 0 0 2 2 2 2 CBS domain PhnA_Zn_Ribbon PF08274.7 gi|557695085|ref|YP_008798139.1| - 0.37 10.5 2.6 0.58 9.9 1.8 1.3 1 0 0 1 1 1 0 PhnA Zinc-Ribbon Mut7-C PF01927.11 gi|557695086|ref|YP_008798140.1| - 4.4e-32 111.0 5.2 2.5e-31 108.6 3.6 1.8 1 1 0 1 1 1 1 Mut7-C RNAse domain Zn_Tnp_IS1595 PF12760.2 gi|557695086|ref|YP_008798140.1| - 0.005 16.6 0.7 0.0077 16.0 0.5 1.3 1 0 0 1 1 1 1 Transposase zinc-ribbon domain zf-BED PF02892.10 gi|557695086|ref|YP_008798140.1| - 0.027 14.2 1.6 0.027 14.2 1.1 1.6 1 1 0 1 1 1 0 BED zinc finger TroA PF01297.12 gi|557695086|ref|YP_008798140.1| - 0.035 13.3 0.0 0.042 13.0 0.0 1.1 1 0 0 1 1 1 0 Periplasmic solute binding protein family zinc-ribbons_6 PF07191.7 gi|557695086|ref|YP_008798140.1| - 0.038 13.7 0.0 0.056 13.2 0.0 1.2 1 0 0 1 1 1 0 zinc-ribbons ADK_lid PF05191.9 gi|557695086|ref|YP_008798140.1| - 0.071 12.7 1.8 0.32 10.7 0.5 2.1 2 0 0 2 2 2 0 Adenylate kinase, active site lid DUF188 PF02639.9 gi|557695086|ref|YP_008798140.1| - 0.083 12.3 0.1 0.13 11.7 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized BCR, YaiI/YqxD family COG1671 DNA_ligase_ZBD PF03119.11 gi|557695086|ref|YP_008798140.1| - 0.11 12.1 0.4 0.19 11.4 0.3 1.4 1 0 0 1 1 1 0 NAD-dependent DNA ligase C4 zinc finger domain ADH_zinc_N PF00107.21 gi|557695086|ref|YP_008798140.1| - 0.11 11.9 0.1 0.17 11.4 0.1 1.2 1 0 0 1 1 1 0 Zinc-binding dehydrogenase OrfB_Zn_ribbon PF07282.6 gi|557695086|ref|YP_008798140.1| - 0.14 11.8 2.7 0.29 10.8 1.1 2.0 1 1 1 2 2 2 0 Putative transposase DNA-binding domain DUF2296 PF10058.4 gi|557695086|ref|YP_008798140.1| - 0.17 11.6 0.9 18 5.1 0.2 2.3 2 0 0 2 2 2 0 Predicted integral membrane metal-binding protein (DUF2296) zf-Dof PF02701.10 gi|557695086|ref|YP_008798140.1| - 0.21 11.5 1.4 0.36 10.7 1.0 1.3 1 0 0 1 1 1 0 Dof domain, zinc finger DUF4182 PF13790.1 gi|557695086|ref|YP_008798140.1| - 2.7 7.8 4.6 3.6 7.4 0.2 2.7 3 0 0 3 3 3 0 Domain of unknown function (DUF4182) AMMECR1 PF01871.12 gi|557695087|ref|YP_008798141.1| - 8e-54 181.3 0.0 1e-53 180.9 0.0 1.1 1 0 0 1 1 1 1 AMMECR1 Glyco_trans_1_3 PF13528.1 gi|557695088|ref|YP_008798142.1| - 6.3e-29 101.1 0.0 1.8e-28 99.6 0.0 1.6 1 1 0 1 1 1 1 Glycosyl transferase family 1 Glyco_tran_28_C PF04101.11 gi|557695088|ref|YP_008798142.1| - 4.8e-16 58.8 0.0 1.1e-14 54.4 0.0 2.1 2 0 0 2 2 2 1 Glycosyltransferase family 28 C-terminal domain UDPGT PF00201.13 gi|557695088|ref|YP_008798142.1| - 4e-07 28.9 0.0 1.2e-05 24.1 0.0 2.1 1 1 1 2 2 2 2 UDP-glucoronosyl and UDP-glucosyl transferase AAA_assoc_C PF09821.4 gi|557695089|ref|YP_008798143.1| - 2.2e-19 69.8 0.2 3.1e-19 69.4 0.1 1.2 1 0 0 1 1 1 1 C-terminal AAA-associated domain ABC_tran PF00005.22 gi|557695090|ref|YP_008798144.1| - 2e-35 122.0 0.0 2.4e-34 118.5 0.0 2.1 2 1 0 2 2 2 1 ABC transporter AAA_21 PF13304.1 gi|557695090|ref|YP_008798144.1| - 1.8e-12 47.8 0.6 2.3e-06 27.7 0.0 2.1 1 1 0 2 2 2 2 AAA domain MobB PF03205.9 gi|557695090|ref|YP_008798144.1| - 0.0064 16.2 0.2 0.021 14.5 0.1 1.9 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_25 PF13481.1 gi|557695090|ref|YP_008798144.1| - 0.012 15.0 0.1 0.022 14.1 0.1 1.4 1 0 0 1 1 1 0 AAA domain AAA PF00004.24 gi|557695090|ref|YP_008798144.1| - 0.013 15.7 0.1 0.27 11.4 0.1 2.3 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_15 PF13175.1 gi|557695090|ref|YP_008798144.1| - 0.014 14.4 0.1 1.4 7.8 0.0 2.1 2 0 0 2 2 2 0 AAA ATPase domain AAA_29 PF13555.1 gi|557695090|ref|YP_008798144.1| - 0.016 14.7 1.6 0.017 14.6 0.1 1.7 2 0 0 2 2 2 0 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|557695090|ref|YP_008798144.1| - 0.019 14.9 0.0 0.025 14.5 0.0 1.3 1 1 0 1 1 1 0 AAA ATPase domain AAA_17 PF13207.1 gi|557695090|ref|YP_008798144.1| - 0.022 15.5 0.5 0.056 14.2 0.2 1.7 2 0 0 2 2 2 0 AAA domain NACHT PF05729.7 gi|557695090|ref|YP_008798144.1| - 0.023 14.3 1.1 0.047 13.3 0.2 1.8 2 0 0 2 2 2 0 NACHT domain NB-ARC PF00931.17 gi|557695090|ref|YP_008798144.1| - 0.024 13.4 0.3 0.04 12.7 0.2 1.3 1 0 0 1 1 1 0 NB-ARC domain AAA_18 PF13238.1 gi|557695090|ref|YP_008798144.1| - 0.025 14.8 0.0 0.054 13.7 0.0 1.6 2 0 0 2 2 2 0 AAA domain DUF258 PF03193.11 gi|557695090|ref|YP_008798144.1| - 0.03 13.5 0.0 0.04 13.1 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_22 PF13401.1 gi|557695090|ref|YP_008798144.1| - 0.03 14.4 0.0 0.06 13.4 0.0 1.6 1 0 0 1 1 1 0 AAA domain Miro PF08477.8 gi|557695090|ref|YP_008798144.1| - 0.059 13.8 0.1 0.13 12.7 0.1 1.6 1 0 0 1 1 1 0 Miro-like protein Pox_A32 PF04665.7 gi|557695090|ref|YP_008798144.1| - 0.11 11.7 0.2 0.2 10.9 0.1 1.4 1 0 0 1 1 1 0 Poxvirus A32 protein ABC_ATPase PF09818.4 gi|557695090|ref|YP_008798144.1| - 0.11 11.0 0.4 8.4 4.8 0.0 2.7 2 1 0 2 2 2 0 Predicted ATPase of the ABC class AAA_10 PF12846.2 gi|557695090|ref|YP_008798144.1| - 0.13 11.6 1.5 0.22 10.9 0.6 1.6 2 0 0 2 2 2 0 AAA-like domain AAA_19 PF13245.1 gi|557695090|ref|YP_008798144.1| - 0.14 11.9 0.7 0.93 9.2 0.1 2.3 2 0 0 2 2 2 0 Part of AAA domain AAA_23 PF13476.1 gi|557695090|ref|YP_008798144.1| - 0.15 12.4 0.2 0.22 11.8 0.1 1.2 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.1 gi|557695090|ref|YP_008798144.1| - 0.16 11.5 0.1 0.27 10.8 0.0 1.3 1 0 0 1 1 1 0 AAA domain BPD_transp_1 PF00528.17 gi|557695091|ref|YP_008798145.1| - 5.7e-26 91.1 37.6 2.9e-17 62.8 5.3 3.1 3 1 0 3 3 3 2 Binding-protein-dependent transport system inner membrane component polyprenyl_synt PF00348.12 gi|557695092|ref|YP_008798146.1| - 6.2e-40 136.6 0.3 9.4e-40 136.0 0.2 1.2 1 0 0 1 1 1 1 Polyprenyl synthetase Thioredoxin PF00085.15 gi|557695093|ref|YP_008798147.1| - 8.2e-31 105.7 0.0 1.1e-30 105.4 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.1 gi|557695093|ref|YP_008798147.1| - 4.3e-10 39.7 0.1 4e-09 36.6 0.1 2.1 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_8 PF13905.1 gi|557695093|ref|YP_008798147.1| - 1.1e-08 35.0 0.0 1.7e-06 28.0 0.0 2.3 1 1 1 2 2 2 1 Thioredoxin-like Redoxin PF08534.5 gi|557695093|ref|YP_008798147.1| - 7.7e-05 22.2 0.1 0.00081 18.9 0.0 2.0 1 1 1 2 2 2 1 Redoxin Thioredoxin_7 PF13899.1 gi|557695093|ref|YP_008798147.1| - 0.00014 21.7 0.0 0.00021 21.2 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin-like Thioredoxin_3 PF13192.1 gi|557695093|ref|YP_008798147.1| - 0.00027 20.6 0.0 0.00047 19.9 0.0 1.4 1 0 0 1 1 1 1 Thioredoxin domain AhpC-TSA PF00578.16 gi|557695093|ref|YP_008798147.1| - 0.00062 19.4 0.0 0.0033 17.0 0.0 1.9 1 1 1 2 2 2 1 AhpC/TSA family HyaE PF07449.6 gi|557695093|ref|YP_008798147.1| - 0.00095 19.0 0.0 0.0019 18.0 0.0 1.5 1 1 0 1 1 1 1 Hydrogenase-1 expression protein HyaE Thioredoxin_9 PF14595.1 gi|557695093|ref|YP_008798147.1| - 0.0034 16.9 0.0 0.0039 16.7 0.0 1.4 1 1 0 1 1 1 1 Thioredoxin DSBA PF01323.15 gi|557695093|ref|YP_008798147.1| - 0.015 14.9 0.4 0.12 11.9 0.0 2.1 1 1 1 2 2 2 0 DSBA-like thioredoxin domain DUF953 PF06110.6 gi|557695093|ref|YP_008798147.1| - 0.021 14.2 0.1 0.12 11.7 0.1 2.1 1 1 0 1 1 1 0 Eukaryotic protein of unknown function (DUF953) TraF PF13728.1 gi|557695093|ref|YP_008798147.1| - 0.055 12.9 0.0 0.15 11.4 0.0 1.8 1 1 0 2 2 2 0 F plasmid transfer operon protein PhzC-PhzF PF02567.11 gi|557695093|ref|YP_008798147.1| - 0.13 11.4 0.0 0.18 10.9 0.0 1.2 1 0 0 1 1 1 0 Phenazine biosynthesis-like protein Thioredoxin_4 PF13462.1 gi|557695093|ref|YP_008798147.1| - 0.15 12.0 0.1 0.69 9.9 0.0 1.9 1 1 1 2 2 2 0 Thioredoxin Aminotran_1_2 PF00155.16 gi|557695095|ref|YP_008798149.1| - 2e-45 155.3 0.0 2.6e-45 154.9 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.14 gi|557695095|ref|YP_008798149.1| - 2.7e-08 32.9 0.0 3.6e-07 29.2 0.0 2.1 2 0 0 2 2 2 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.15 gi|557695095|ref|YP_008798149.1| - 2e-07 29.6 0.0 3.7e-07 28.7 0.0 1.3 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Alliinase_C PF04864.8 gi|557695095|ref|YP_008798149.1| - 0.00029 19.6 0.0 0.00091 17.9 0.0 1.7 2 0 0 2 2 2 1 Allinase DUF302 PF03625.9 gi|557695095|ref|YP_008798149.1| - 0.036 13.6 0.0 0.11 12.1 0.0 1.8 1 0 0 1 1 1 0 Domain of unknown function DUF302 Aminotran_MocR PF12897.2 gi|557695095|ref|YP_008798149.1| - 0.051 12.1 0.0 0.088 11.3 0.0 1.4 1 1 0 1 1 1 0 Alanine-glyoxylate amino-transferase TFIIE_alpha PF02002.12 gi|557695096|ref|YP_008798150.1| - 2.2e-18 65.7 0.4 3e-18 65.2 0.3 1.2 1 0 0 1 1 1 1 TFIIE alpha subunit TrmB PF01978.14 gi|557695096|ref|YP_008798150.1| - 0.0022 17.6 0.3 0.019 14.6 0.0 2.1 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB Acetyltransf_6 PF13480.1 gi|557695096|ref|YP_008798150.1| - 0.0057 16.6 0.1 0.0097 15.8 0.1 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain IBR PF01485.16 gi|557695096|ref|YP_008798150.1| - 0.015 15.1 0.2 0.022 14.5 0.1 1.3 1 0 0 1 1 1 0 IBR domain HTH_9 PF08221.6 gi|557695096|ref|YP_008798150.1| - 0.023 14.5 0.0 0.039 13.8 0.0 1.4 1 0 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain DUF61 PF01886.11 gi|557695096|ref|YP_008798150.1| - 0.1 12.4 0.4 0.32 10.8 0.1 1.8 2 0 0 2 2 2 0 Protein of unknown function DUF61 zf-C3HC PF07967.8 gi|557695096|ref|YP_008798150.1| - 0.13 12.0 0.1 0.24 11.1 0.0 1.5 1 1 0 1 1 1 0 C3HC zinc finger-like Sigma70_r3 PF04539.11 gi|557695096|ref|YP_008798150.1| - 0.19 11.6 0.5 0.35 10.7 0.0 1.6 2 0 0 2 2 2 0 Sigma-70 region 3 Trm56 PF01994.11 gi|557695097|ref|YP_008798151.1| - 1.1e-44 151.1 0.1 1.5e-44 150.6 0.1 1.2 1 0 0 1 1 1 1 tRNA ribose 2'-O-methyltransferase, aTrm56 V_ATPase_I PF01496.14 gi|557695098|ref|YP_008798152.1| - 8.4e-52 176.0 4.6 1.3e-39 135.7 0.0 2.1 2 0 0 2 2 2 2 V-type ATPase 116kDa subunit family DUF374 PF04028.8 gi|557695098|ref|YP_008798152.1| - 0.017 14.3 0.0 0.043 13.0 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF374) TMF_TATA_bd PF12325.3 gi|557695098|ref|YP_008798152.1| - 0.021 14.5 1.6 2.7 7.7 0.2 2.4 2 0 0 2 2 2 0 TATA element modulatory factor 1 TATA binding AAA_13 PF13166.1 gi|557695098|ref|YP_008798152.1| - 0.025 13.0 0.3 0.036 12.5 0.2 1.1 1 0 0 1 1 1 0 AAA domain MutS_III PF05192.13 gi|557695098|ref|YP_008798152.1| - 0.073 12.8 0.4 0.13 12.0 0.3 1.5 1 0 0 1 1 1 0 MutS domain III DUF4140 PF13600.1 gi|557695098|ref|YP_008798152.1| - 0.12 12.8 0.3 1.3 9.5 0.0 2.6 3 0 0 3 3 3 0 N-terminal domain of unknown function (DUF4140) Glycoprotein_B PF00606.13 gi|557695098|ref|YP_008798152.1| - 2.9 5.7 4.8 4.4 5.2 3.3 1.1 1 0 0 1 1 1 0 Herpesvirus Glycoprotein B Oxidored_q3 PF00499.15 gi|557695099|ref|YP_008798153.1| - 3.1e-07 30.2 10.7 3.1e-07 30.2 7.4 1.4 1 1 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 DUF4040 PF13244.1 gi|557695099|ref|YP_008798153.1| - 4.2e-05 23.4 12.9 4.7e-05 23.2 9.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4040) CTP_transf_1 PF01148.15 gi|557695099|ref|YP_008798153.1| - 0.32 10.5 6.8 0.36 10.4 4.7 1.0 1 0 0 1 1 1 0 Cytidylyltransferase family MerC PF03203.9 gi|557695099|ref|YP_008798153.1| - 1.2 9.4 7.7 1.5 9.1 5.4 1.1 1 0 0 1 1 1 0 MerC mercury resistance protein Bax1-I PF01027.15 gi|557695099|ref|YP_008798153.1| - 2.6 7.6 13.0 3 7.4 9.0 1.0 1 0 0 1 1 1 0 Inhibitor of apoptosis-promoting Bax1 Herpes_LMP2 PF07415.6 gi|557695099|ref|YP_008798153.1| - 3.4 6.1 8.7 3.7 6.0 6.0 1.0 1 0 0 1 1 1 0 Gammaherpesvirus latent membrane protein (LMP2) protein Glucos_trans_II PF14264.1 gi|557695099|ref|YP_008798153.1| - 7.5 5.4 12.5 8.5 5.2 8.7 1.0 1 0 0 1 1 1 0 Glucosyl transferase GtrII DUF2029 PF09594.5 gi|557695100|ref|YP_008798154.1| - 0.0043 16.5 2.9 0.0046 16.5 2.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF2029) DUF1469 PF07332.6 gi|557695100|ref|YP_008798154.1| - 0.7 9.6 4.3 1.8 8.3 0.2 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF1469) Oxidored_q2 PF00420.19 gi|557695101|ref|YP_008798155.1| - 5.5e-21 73.9 4.2 6.3e-21 73.7 2.9 1.0 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L Sec61_beta PF03911.11 gi|557695101|ref|YP_008798155.1| - 6.1 6.7 9.0 15 5.4 0.2 2.5 2 0 0 2 2 2 0 Sec61beta family GDE_N PF12439.3 gi|557695102|ref|YP_008798156.1| - 0.048 12.8 0.0 0.052 12.7 0.0 1.2 1 0 0 1 1 1 0 Glycogen debranching enzyme N terminal Metallophos_2 PF12850.2 gi|557695103|ref|YP_008798157.1| - 1e-17 64.4 0.1 1.4e-17 63.9 0.1 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|557695103|ref|YP_008798157.1| - 9e-10 38.2 2.1 2.3e-09 36.9 1.5 1.7 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase CoA_binding_2 PF13380.1 gi|557695104|ref|YP_008798158.1| - 9e-38 129.0 0.2 1.1e-37 128.7 0.2 1.1 1 0 0 1 1 1 1 CoA binding domain CoA_binding PF02629.14 gi|557695104|ref|YP_008798158.1| - 3.8e-08 33.7 0.0 7e-08 32.8 0.0 1.4 2 0 0 2 2 2 1 CoA binding domain Radical_SAM PF04055.16 gi|557695105|ref|YP_008798159.1| - 3e-09 37.2 0.0 5e-09 36.5 0.0 1.4 1 0 0 1 1 1 1 Radical SAM superfamily UPF0547 PF10571.4 gi|557695105|ref|YP_008798159.1| - 0.0011 18.5 0.5 0.0034 17.0 0.4 1.9 1 0 0 1 1 1 1 Uncharacterised protein family UPF0547 zf-ribbon_3 PF13248.1 gi|557695105|ref|YP_008798159.1| - 0.0022 17.1 1.4 0.0022 17.1 1.0 2.6 3 1 0 3 3 3 1 zinc-ribbon domain Fer4_12 PF13353.1 gi|557695105|ref|YP_008798159.1| - 0.0023 18.0 0.0 0.0041 17.2 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain DZR PF12773.2 gi|557695105|ref|YP_008798159.1| - 0.026 14.3 0.1 0.026 14.3 0.1 2.9 3 0 0 3 3 3 0 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|557695105|ref|YP_008798159.1| - 0.39 10.2 6.7 2.5 7.6 0.0 3.2 3 0 0 3 3 3 0 zinc-ribbon domain Thy1 PF02511.10 gi|557695107|ref|YP_008798161.1| - 2.6e-35 121.5 0.0 2.4e-18 66.1 0.0 2.1 2 0 0 2 2 2 2 Thymidylate synthase complementing protein MerR_1 PF13411.1 gi|557695107|ref|YP_008798161.1| - 0.11 12.2 0.0 21 4.9 0.0 2.5 2 0 0 2 2 2 0 MerR HTH family regulatory protein PTPS PF01242.14 gi|557695108|ref|YP_008798162.1| - 9.9e-24 83.3 0.0 1.4e-23 82.9 0.0 1.1 1 0 0 1 1 1 1 6-pyruvoyl tetrahydropterin synthase QueC PF06508.8 gi|557695109|ref|YP_008798163.1| - 1.2e-39 135.8 0.0 1.3e-39 135.6 0.0 1.0 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC ThiI PF02568.9 gi|557695109|ref|YP_008798163.1| - 1.8e-07 30.8 0.0 4.1e-07 29.6 0.0 1.6 1 1 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) tRNA_Me_trans PF03054.11 gi|557695109|ref|YP_008798163.1| - 0.00012 20.7 0.0 0.00016 20.3 0.0 1.2 1 0 0 1 1 1 1 tRNA methyl transferase ATP_bind_3 PF01171.15 gi|557695109|ref|YP_008798163.1| - 0.021 14.3 0.0 0.13 11.7 0.0 2.0 2 1 0 2 2 2 0 PP-loop family Asn_synthase PF00733.16 gi|557695109|ref|YP_008798163.1| - 0.024 14.1 0.0 0.031 13.7 0.0 1.2 1 0 0 1 1 1 0 Asparagine synthase NAD_kinase PF01513.16 gi|557695110|ref|YP_008798164.1| - 3.9e-41 140.7 0.4 4.4e-41 140.5 0.3 1.1 1 0 0 1 1 1 1 ATP-NAD kinase DAGK_cat PF00781.19 gi|557695110|ref|YP_008798164.1| - 0.048 13.0 0.0 0.096 12.1 0.0 1.5 1 0 0 1 1 1 0 Diacylglycerol kinase catalytic domain NOB1_Zn_bind PF08772.6 gi|557695111|ref|YP_008798165.1| - 0.0015 18.2 0.7 0.0027 17.4 0.5 1.4 1 0 0 1 1 1 1 Nin one binding (NOB1) Zn-ribbon like Zn-ribbon_8 PF09723.5 gi|557695111|ref|YP_008798165.1| - 0.02 14.8 2.4 0.26 11.2 1.7 2.2 1 1 0 1 1 1 0 Zinc ribbon domain zf-C2H2 PF00096.21 gi|557695111|ref|YP_008798165.1| - 0.039 14.3 1.5 0.24 11.8 0.1 2.2 2 0 0 2 2 2 0 Zinc finger, C2H2 type PIN_4 PF13638.1 gi|557695111|ref|YP_008798165.1| - 0.087 12.9 0.0 0.56 10.3 0.0 2.0 2 0 0 2 2 2 0 PIN domain UPF0278 PF08745.6 gi|557695111|ref|YP_008798165.1| - 0.14 11.4 1.5 1.2 8.2 0.2 2.1 1 1 0 2 2 2 0 UPF0278 family DUF998 PF06197.8 gi|557695112|ref|YP_008798166.1| - 3.3e-20 72.1 29.7 4e-20 71.9 20.6 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF998) Dicty_CAR PF05462.6 gi|557695112|ref|YP_008798166.1| - 0.016 14.0 0.8 0.022 13.6 0.5 1.3 1 0 0 1 1 1 0 Slime mold cyclic AMP receptor MerC PF03203.9 gi|557695112|ref|YP_008798166.1| - 3.7 7.9 13.3 1.3 9.3 6.7 2.1 1 1 1 2 2 2 0 MerC mercury resistance protein Abi PF02517.11 gi|557695113|ref|YP_008798167.1| - 2.8 8.1 13.6 4.3 7.5 5.8 2.9 1 1 0 2 2 2 0 CAAX protease self-immunity CopD PF05425.8 gi|557695114|ref|YP_008798168.1| - 0.0012 19.0 6.2 0.0012 19.0 4.3 1.6 2 0 0 2 2 2 1 Copper resistance protein D DUF4149 PF13664.1 gi|557695114|ref|YP_008798168.1| - 0.0025 17.8 0.6 0.0037 17.2 0.4 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4149) GATase PF00117.23 gi|557695115|ref|YP_008798169.1| - 3.2e-39 134.3 0.0 4.7e-39 133.8 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferase class-I GMP_synt_C PF00958.17 gi|557695115|ref|YP_008798169.1| - 1.9e-30 104.4 0.0 4e-30 103.3 0.0 1.6 1 0 0 1 1 1 1 GMP synthase C terminal domain NAD_synthase PF02540.12 gi|557695115|ref|YP_008798169.1| - 4.5e-09 35.5 0.1 0.00053 18.9 0.0 2.2 2 0 0 2 2 2 2 NAD synthase Peptidase_C26 PF07722.8 gi|557695115|ref|YP_008798169.1| - 6.3e-09 35.5 0.0 2e-08 33.9 0.0 1.9 1 1 0 1 1 1 1 Peptidase C26 tRNA_Me_trans PF03054.11 gi|557695115|ref|YP_008798169.1| - 0.00047 18.8 0.0 0.028 13.0 0.0 2.1 2 0 0 2 2 2 1 tRNA methyl transferase Asn_synthase PF00733.16 gi|557695115|ref|YP_008798169.1| - 0.00088 18.8 0.0 0.0014 18.1 0.0 1.3 1 0 0 1 1 1 1 Asparagine synthase QueC PF06508.8 gi|557695115|ref|YP_008798169.1| - 0.0021 17.4 0.0 0.04 13.2 0.0 2.2 2 0 0 2 2 2 1 Queuosine biosynthesis protein QueC ThiI PF02568.9 gi|557695115|ref|YP_008798169.1| - 0.0029 17.1 0.0 0.009 15.4 0.0 1.7 2 0 0 2 2 2 1 Thiamine biosynthesis protein (ThiI) ATP_bind_3 PF01171.15 gi|557695115|ref|YP_008798169.1| - 0.0038 16.7 0.0 0.026 14.0 0.0 2.0 2 0 0 2 2 2 1 PP-loop family DUF2392 PF10288.4 gi|557695115|ref|YP_008798169.1| - 0.1 12.9 0.0 0.21 11.9 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2392) ECH PF00378.15 gi|557695116|ref|YP_008798170.1| - 1.2e-71 240.7 0.8 1.4e-71 240.4 0.6 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase family Peptidase_S49 PF01343.13 gi|557695116|ref|YP_008798170.1| - 0.00085 19.1 0.0 0.0019 17.9 0.0 1.6 1 0 0 1 1 1 1 Peptidase family S49 ECH_C PF13766.1 gi|557695116|ref|YP_008798170.1| - 0.0014 18.7 0.8 0.0026 17.9 0.1 1.7 2 0 0 2 2 2 1 2-enoyl-CoA Hydratase C-terminal region SDH_sah PF01972.11 gi|557695116|ref|YP_008798170.1| - 0.0031 16.3 0.0 0.0082 14.9 0.0 1.6 1 1 1 2 2 2 1 Serine dehydrogenase proteinase SeleniumBinding PF11524.3 gi|557695116|ref|YP_008798170.1| - 0.046 13.8 0.0 0.088 12.9 0.0 1.4 1 0 0 1 1 1 0 Selenium binding protein FleQ PF06490.6 gi|557695116|ref|YP_008798170.1| - 0.15 12.2 0.0 2.2 8.4 0.0 2.3 2 1 0 2 2 2 0 Flagellar regulatory protein FleQ GlutR_dimer PF00745.15 gi|557695116|ref|YP_008798170.1| - 0.36 10.8 3.2 0.34 10.8 0.2 2.2 2 0 0 2 2 2 0 Glutamyl-tRNAGlu reductase, dimerisation domain DUF3565 PF12088.3 gi|557695117|ref|YP_008798171.1| - 0.13 12.0 0.0 0.3 10.8 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3565) AdoMet_dc PF02675.10 gi|557695118|ref|YP_008798172.1| - 5.5e-35 119.4 0.0 7e-35 119.1 0.0 1.1 1 0 0 1 1 1 1 S-adenosylmethionine decarboxylase Spermine_synth PF01564.12 gi|557695119|ref|YP_008798173.1| - 5.9e-60 202.2 0.0 7.7e-60 201.8 0.0 1.1 1 0 0 1 1 1 1 Spermine/spermidine synthase Methyltransf_26 PF13659.1 gi|557695119|ref|YP_008798173.1| - 0.00086 19.3 0.0 0.0015 18.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_30 PF05430.6 gi|557695119|ref|YP_008798173.1| - 0.02 14.5 0.0 0.038 13.6 0.0 1.4 1 0 0 1 1 1 0 S-adenosyl-L-methionine-dependent methyltransferase Methyltransf_18 PF12847.2 gi|557695119|ref|YP_008798173.1| - 0.067 13.7 0.0 0.098 13.2 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain BPD_transp_1 PF00528.17 gi|557695120|ref|YP_008798174.1| - 9.6e-18 64.3 19.1 1.4e-17 63.8 13.2 1.3 1 0 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.22 gi|557695121|ref|YP_008798175.1| - 1e-29 103.5 0.0 1.4e-29 103.1 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|557695121|ref|YP_008798175.1| - 3.6e-06 27.1 0.0 0.028 14.4 0.0 2.1 2 0 0 2 2 2 2 AAA domain AAA_29 PF13555.1 gi|557695121|ref|YP_008798175.1| - 0.00018 20.9 0.3 0.00034 20.0 0.2 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_25 PF13481.1 gi|557695121|ref|YP_008798175.1| - 0.0018 17.6 0.1 0.03 13.7 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|557695121|ref|YP_008798175.1| - 0.0035 17.4 1.5 0.034 14.3 1.0 2.0 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|557695121|ref|YP_008798175.1| - 0.0036 17.3 0.2 0.01 15.8 0.1 1.7 2 0 0 2 2 2 1 AAA ATPase domain SMC_N PF02463.14 gi|557695121|ref|YP_008798175.1| - 0.0042 16.3 0.1 0.24 10.5 0.0 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain DUF258 PF03193.11 gi|557695121|ref|YP_008798175.1| - 0.0061 15.7 0.0 0.0098 15.0 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_15 PF13175.1 gi|557695121|ref|YP_008798175.1| - 0.0074 15.3 0.0 2.6 6.9 0.0 2.0 2 0 0 2 2 2 2 AAA ATPase domain MobB PF03205.9 gi|557695121|ref|YP_008798175.1| - 0.0078 15.9 0.4 0.017 14.8 0.1 1.6 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_23 PF13476.1 gi|557695121|ref|YP_008798175.1| - 0.0083 16.4 0.1 0.012 15.9 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|557695121|ref|YP_008798175.1| - 0.017 14.8 1.0 0.032 13.9 0.2 1.8 2 0 0 2 2 2 0 Part of AAA domain AAA_17 PF13207.1 gi|557695121|ref|YP_008798175.1| - 0.027 15.2 1.2 0.038 14.8 0.8 1.7 1 1 0 1 1 1 0 AAA domain AAA_18 PF13238.1 gi|557695121|ref|YP_008798175.1| - 0.033 14.4 0.2 0.058 13.7 0.1 1.4 1 0 0 1 1 1 0 AAA domain NACHT PF05729.7 gi|557695121|ref|YP_008798175.1| - 0.042 13.4 0.1 0.092 12.3 0.1 1.5 1 0 0 1 1 1 0 NACHT domain PduV-EutP PF10662.4 gi|557695121|ref|YP_008798175.1| - 0.057 12.9 0.2 0.12 11.8 0.1 1.4 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation cobW PF02492.14 gi|557695121|ref|YP_008798175.1| - 0.076 12.4 1.1 0.097 12.1 0.2 1.6 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain T2SE PF00437.15 gi|557695121|ref|YP_008798175.1| - 0.076 11.8 0.3 0.16 10.8 0.0 1.5 2 0 0 2 2 2 0 Type II/IV secretion system protein FtsK_SpoIIIE PF01580.13 gi|557695121|ref|YP_008798175.1| - 0.1 12.0 0.3 0.35 10.3 0.0 1.8 2 0 0 2 2 2 0 FtsK/SpoIIIE family Miro PF08477.8 gi|557695121|ref|YP_008798175.1| - 0.14 12.6 0.2 0.35 11.3 0.1 1.7 2 0 0 2 2 2 0 Miro-like protein Phosphonate-bd PF12974.2 gi|557695122|ref|YP_008798176.1| - 3.7e-51 173.8 0.1 4.6e-51 173.5 0.1 1.0 1 0 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein SBP_bac_3 PF00497.15 gi|557695122|ref|YP_008798176.1| - 1.2e-05 24.7 0.0 0.002 17.4 0.0 2.2 1 1 1 2 2 2 2 Bacterial extracellular solute-binding proteins, family 3 NMT1 PF09084.6 gi|557695122|ref|YP_008798176.1| - 0.00013 21.6 0.0 0.0015 18.2 0.0 2.6 1 1 0 1 1 1 1 NMT1/THI5 like LysR_substrate PF03466.15 gi|557695122|ref|YP_008798176.1| - 0.0011 18.0 0.0 1 8.4 0.0 2.5 2 0 0 2 2 2 2 LysR substrate binding domain NIF3 PF01784.13 gi|557695122|ref|YP_008798176.1| - 0.0077 15.8 0.0 0.012 15.2 0.0 1.4 1 0 0 1 1 1 1 NIF3 (NGG1p interacting factor 3) SBP_bac_11 PF13531.1 gi|557695122|ref|YP_008798176.1| - 0.013 15.1 0.3 0.016 14.8 0.2 1.2 1 0 0 1 1 1 0 Bacterial extracellular solute-binding protein RsbRD_N PF14361.1 gi|557695122|ref|YP_008798176.1| - 0.076 13.4 0.0 0.15 12.5 0.0 1.5 1 0 0 1 1 1 0 RsbT co-antagonist protein rsbRD N-terminal domain HTH_3 PF01381.17 gi|557695123|ref|YP_008798177.1| - 2.2e-05 24.2 0.1 0.0054 16.5 0.0 2.8 2 0 0 2 2 2 1 Helix-turn-helix Rubrerythrin PF02915.12 gi|557695123|ref|YP_008798177.1| - 0.00037 20.8 4.8 0.00057 20.2 1.5 2.4 2 1 1 3 3 2 1 Rubrerythrin Ferritin_2 PF13668.1 gi|557695123|ref|YP_008798177.1| - 0.00054 19.9 0.3 0.0011 18.9 0.2 1.6 1 1 0 1 1 1 1 Ferritin-like domain Neuralized PF07177.7 gi|557695123|ref|YP_008798177.1| - 0.017 14.9 0.0 0.11 12.4 0.0 2.0 2 0 0 2 2 2 0 Neuralized DUF1840 PF08895.6 gi|557695123|ref|YP_008798177.1| - 0.017 15.1 0.3 0.062 13.3 0.1 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF1840) P22_Cro PF14549.1 gi|557695123|ref|YP_008798177.1| - 0.019 14.6 0.0 0.19 11.4 0.0 2.4 1 1 1 2 2 2 0 DNA-binding transcriptional regulator Cro Activator-TraM PF11657.3 gi|557695123|ref|YP_008798177.1| - 0.031 13.7 1.4 0.045 13.2 0.3 1.8 2 0 0 2 2 2 0 Transcriptional activator TraM Phenol_Hydrox PF02332.13 gi|557695123|ref|YP_008798177.1| - 0.076 12.3 0.2 0.38 10.0 0.0 2.2 2 2 0 2 2 2 0 Methane/Phenol/Toluene Hydroxylase HTH_23 PF13384.1 gi|557695123|ref|YP_008798177.1| - 0.09 12.4 0.5 0.26 11.0 0.0 2.0 2 0 0 2 2 2 0 Homeodomain-like domain HTH_31 PF13560.1 gi|557695123|ref|YP_008798177.1| - 0.16 12.2 0.3 0.16 12.2 0.2 3.4 2 1 2 4 4 4 0 Helix-turn-helix domain RNA_pol_Rpb4 PF03874.11 gi|557695123|ref|YP_008798177.1| - 0.26 11.3 1.9 8.8 6.3 0.0 3.1 2 1 0 2 2 2 0 RNA polymerase Rpb4 MarR_2 PF12802.2 gi|557695123|ref|YP_008798177.1| - 0.33 10.6 1.9 0.84 9.3 0.1 2.6 3 1 1 4 4 4 0 MarR family ABC-3 PF00950.12 gi|557695124|ref|YP_008798178.1| - 1.4e-75 253.9 38.5 1.6e-75 253.7 26.7 1.0 1 0 0 1 1 1 1 ABC 3 transport family FecCD PF01032.13 gi|557695124|ref|YP_008798178.1| - 0.099 11.4 39.1 0.062 12.1 25.6 1.6 1 1 1 2 2 2 0 FecCD transport family ABC_tran PF00005.22 gi|557695125|ref|YP_008798179.1| - 3.9e-32 111.3 0.0 5.8e-32 110.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|557695125|ref|YP_008798179.1| - 1.1e-15 58.4 0.1 1.4e-06 28.4 0.0 2.1 1 1 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|557695125|ref|YP_008798179.1| - 7.2e-08 31.9 0.5 0.00012 21.3 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|557695125|ref|YP_008798179.1| - 2.6e-06 26.8 0.0 5e-06 25.9 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|557695125|ref|YP_008798179.1| - 7.1e-06 26.4 0.2 1.5e-05 25.4 0.0 1.5 2 0 0 2 2 2 1 AAA domain AAA_15 PF13175.1 gi|557695125|ref|YP_008798179.1| - 1.7e-05 24.1 0.0 0.084 11.9 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_10 PF12846.2 gi|557695125|ref|YP_008798179.1| - 3e-05 23.6 0.2 0.0028 17.1 0.0 2.1 2 0 0 2 2 2 1 AAA-like domain AAA_16 PF13191.1 gi|557695125|ref|YP_008798179.1| - 0.0003 20.8 0.3 0.0014 18.6 0.2 1.9 1 1 0 1 1 1 1 AAA ATPase domain AAA_33 PF13671.1 gi|557695125|ref|YP_008798179.1| - 0.0011 18.8 0.1 0.005 16.7 0.1 2.0 1 1 0 1 1 1 1 AAA domain SbcCD_C PF13558.1 gi|557695125|ref|YP_008798179.1| - 0.0021 17.9 0.9 0.032 14.1 0.6 2.2 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit MobB PF03205.9 gi|557695125|ref|YP_008798179.1| - 0.0028 17.3 0.0 0.0053 16.4 0.0 1.5 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA PF00004.24 gi|557695125|ref|YP_008798179.1| - 0.0029 17.7 0.0 0.13 12.5 0.0 2.3 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) DUF258 PF03193.11 gi|557695125|ref|YP_008798179.1| - 0.0038 16.4 0.0 0.0063 15.7 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 ABC_ATPase PF09818.4 gi|557695125|ref|YP_008798179.1| - 0.0041 15.7 0.1 0.033 12.7 0.0 2.0 2 0 0 2 2 2 1 Predicted ATPase of the ABC class MMR_HSR1 PF01926.18 gi|557695125|ref|YP_008798179.1| - 0.0055 16.6 0.0 0.0084 16.0 0.0 1.5 1 1 0 1 1 1 1 50S ribosome-binding GTPase ATP_bind_1 PF03029.12 gi|557695125|ref|YP_008798179.1| - 0.0055 16.2 0.1 0.063 12.8 0.0 2.0 2 0 0 2 2 2 1 Conserved hypothetical ATP binding protein AAA_25 PF13481.1 gi|557695125|ref|YP_008798179.1| - 0.0064 15.9 0.0 0.018 14.4 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA_17 PF13207.1 gi|557695125|ref|YP_008798179.1| - 0.0095 16.7 0.6 0.031 15.1 0.4 1.9 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|557695125|ref|YP_008798179.1| - 0.019 15.1 0.5 0.051 13.7 0.0 1.8 2 1 0 2 2 2 0 AAA domain AAA_14 PF13173.1 gi|557695125|ref|YP_008798179.1| - 0.02 14.7 0.3 0.68 9.8 0.0 2.6 2 1 1 3 3 3 0 AAA domain Zot PF05707.7 gi|557695125|ref|YP_008798179.1| - 0.021 14.3 0.1 0.24 10.8 0.1 2.0 1 1 0 1 1 1 0 Zonular occludens toxin (Zot) Hydrolase PF00702.21 gi|557695125|ref|YP_008798179.1| - 0.027 14.8 0.0 0.035 14.4 0.0 1.3 1 0 0 1 1 1 0 haloacid dehalogenase-like hydrolase Arch_ATPase PF01637.13 gi|557695125|ref|YP_008798179.1| - 0.043 13.5 0.1 0.19 11.4 0.0 1.9 2 0 0 2 2 2 0 Archaeal ATPase AAA_18 PF13238.1 gi|557695125|ref|YP_008798179.1| - 0.046 14.0 0.0 1.2 9.5 0.0 2.2 2 0 0 2 2 2 0 AAA domain ATP-synt_ab PF00006.20 gi|557695125|ref|YP_008798179.1| - 0.061 12.8 0.1 2 7.8 0.0 2.1 2 0 0 2 2 2 0 ATP synthase alpha/beta family, nucleotide-binding domain NACHT PF05729.7 gi|557695125|ref|YP_008798179.1| - 0.068 12.8 0.1 0.13 11.9 0.0 1.4 1 0 0 1 1 1 0 NACHT domain T2SE PF00437.15 gi|557695125|ref|YP_008798179.1| - 0.075 11.9 0.1 0.15 10.9 0.1 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_19 PF13245.1 gi|557695125|ref|YP_008798179.1| - 0.093 12.4 0.1 0.29 10.9 0.1 1.8 1 0 0 1 1 1 0 Part of AAA domain Miro PF08477.8 gi|557695125|ref|YP_008798179.1| - 0.13 12.7 0.0 0.25 11.8 0.0 1.5 1 0 0 1 1 1 0 Miro-like protein Dynamin_N PF00350.18 gi|557695125|ref|YP_008798179.1| - 0.15 11.9 0.1 0.34 10.7 0.1 1.6 2 0 0 2 2 2 0 Dynamin family TroA PF01297.12 gi|557695126|ref|YP_008798180.1| - 9.6e-70 234.7 0.0 1.2e-69 234.4 0.0 1.0 1 0 0 1 1 1 1 Periplasmic solute binding protein family Toprim_4 PF13662.1 gi|557695127|ref|YP_008798181.1| - 1.4e-10 41.0 0.1 3.7e-10 39.6 0.0 1.8 1 0 0 1 1 1 1 Toprim domain Toprim PF01751.17 gi|557695127|ref|YP_008798181.1| - 5.3e-06 26.3 0.1 3.3e-05 23.7 0.1 2.4 1 1 0 1 1 1 1 Toprim domain Toprim_2 PF13155.1 gi|557695127|ref|YP_008798181.1| - 0.026 14.8 0.0 0.063 13.6 0.0 1.7 1 0 0 1 1 1 0 Toprim-like YxiJ PF14176.1 gi|557695127|ref|YP_008798181.1| - 0.035 14.2 0.0 0.064 13.3 0.0 1.3 1 0 0 1 1 1 0 YxiJ-like protein Aldedh PF00171.17 gi|557695127|ref|YP_008798181.1| - 0.1 10.9 0.1 0.3 9.3 0.0 1.8 2 0 0 2 2 2 0 Aldehyde dehydrogenase family eRF1_3 PF03465.10 gi|557695128|ref|YP_008798182.1| - 1.3e-17 64.0 0.0 3.2e-17 62.7 0.0 1.7 1 0 0 1 1 1 1 eRF1 domain 3 eRF1_1 PF03463.10 gi|557695128|ref|YP_008798182.1| - 2.5e-13 49.7 0.9 3.8e-13 49.1 0.2 1.6 2 0 0 2 2 2 1 eRF1 domain 1 eRF1_2 PF03464.10 gi|557695128|ref|YP_008798182.1| - 9.8e-05 22.6 0.1 0.00035 20.9 0.0 2.0 1 1 1 2 2 2 1 eRF1 domain 2 DUF1242 PF06842.7 gi|557695128|ref|YP_008798182.1| - 0.16 11.4 0.0 0.35 10.3 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1242) Asp_Glu_race PF01177.17 gi|557695129|ref|YP_008798183.1| - 5.8e-30 104.8 0.0 7.1e-30 104.5 0.0 1.1 1 0 0 1 1 1 1 Asp/Glu/Hydantoin racemase ThiF PF00899.16 gi|557695129|ref|YP_008798183.1| - 0.037 13.8 0.0 0.1 12.4 0.0 1.6 2 0 0 2 2 2 0 ThiF family Hydantoinase_A PF01968.13 gi|557695130|ref|YP_008798184.1| - 5.6e-86 288.2 11.0 7e-86 287.9 3.0 2.6 3 0 0 3 3 3 2 Hydantoinase/oxoprolinase Hydant_A_N PF05378.8 gi|557695130|ref|YP_008798184.1| - 3.8e-46 156.7 0.0 1e-45 155.3 0.0 1.8 1 0 0 1 1 1 1 Hydantoinase/oxoprolinase N-terminal region MutL PF13941.1 gi|557695130|ref|YP_008798184.1| - 0.024 12.9 0.5 0.87 7.8 0.0 2.3 2 0 0 2 2 2 0 MutL protein Hydantoinase_B PF02538.9 gi|557695131|ref|YP_008798185.1| - 4.8e-164 546.4 0.0 5.6e-164 546.2 0.0 1.0 1 0 0 1 1 1 1 Hydantoinase B/oxoprolinase Methyltransf_16 PF10294.4 gi|557695131|ref|YP_008798185.1| - 0.14 11.5 0.0 0.25 10.7 0.0 1.3 1 0 0 1 1 1 0 Putative methyltransferase Ribosomal_S7 PF00177.16 gi|557695132|ref|YP_008798186.1| - 9.4e-41 138.8 0.5 1.1e-40 138.6 0.4 1.1 1 0 0 1 1 1 1 Ribosomal protein S7p/S5e PEPcase_2 PF14010.1 gi|557695133|ref|YP_008798187.1| - 8.1e-156 519.1 0.0 9.1e-156 518.9 0.0 1.0 1 0 0 1 1 1 1 Phosphoenolpyruvate carboxylase UPF0147 PF03685.8 gi|557695133|ref|YP_008798187.1| - 0.027 14.3 0.3 0.24 11.2 0.0 2.5 3 0 0 3 3 3 0 Uncharacterised protein family (UPF0147) DUF433 PF04255.9 gi|557695133|ref|YP_008798187.1| - 0.076 12.4 0.2 4.3 6.8 0.0 3.2 3 1 0 3 3 3 0 Protein of unknown function (DUF433) PEPcase PF00311.12 gi|557695133|ref|YP_008798187.1| - 0.11 10.3 0.0 0.16 9.7 0.0 1.4 1 0 0 1 1 1 0 Phosphoenolpyruvate carboxylase BPD_transp_2 PF02653.11 gi|557695134|ref|YP_008798188.1| - 2.6e-35 121.6 37.9 3.6e-35 121.2 26.3 1.2 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component BPD_transp_2 PF02653.11 gi|557695135|ref|YP_008798189.1| - 1.1e-32 113.0 31.4 1.1e-32 113.0 21.7 1.5 2 0 0 2 2 2 1 Branched-chain amino acid transport system / permease component NDUF_B12 PF08122.7 gi|557695135|ref|YP_008798189.1| - 0.065 12.9 0.1 0.065 12.9 0.1 2.8 3 0 0 3 3 3 0 NADH-ubiquinone oxidoreductase B12 subunit family ABC_tran PF00005.22 gi|557695136|ref|YP_008798190.1| - 1.1e-51 174.7 0.0 2.2e-31 108.9 0.0 2.2 2 0 0 2 2 2 2 ABC transporter AAA_21 PF13304.1 gi|557695136|ref|YP_008798190.1| - 1.6e-07 31.5 0.0 1.4e-05 25.2 0.0 2.3 1 1 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|557695136|ref|YP_008798190.1| - 2.6e-05 23.4 0.1 0.0024 17.0 0.0 2.5 2 0 0 2 2 2 1 Protein of unknown function, DUF258 AAA_29 PF13555.1 gi|557695136|ref|YP_008798190.1| - 0.00013 21.4 0.0 0.0017 17.8 0.0 2.5 2 0 0 2 2 2 1 P-loop containing region of AAA domain AAA_10 PF12846.2 gi|557695136|ref|YP_008798190.1| - 0.00023 20.6 0.0 0.76 9.1 0.0 2.5 3 0 0 3 3 3 2 AAA-like domain SMC_N PF02463.14 gi|557695136|ref|YP_008798190.1| - 0.0026 17.0 1.0 1.4 8.0 0.0 2.6 3 0 0 3 3 3 2 RecF/RecN/SMC N terminal domain AAA_22 PF13401.1 gi|557695136|ref|YP_008798190.1| - 0.0046 17.1 0.2 11 6.1 0.0 3.9 4 0 0 4 4 4 1 AAA domain AAA_23 PF13476.1 gi|557695136|ref|YP_008798190.1| - 0.016 15.5 0.0 0.035 14.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.1 gi|557695136|ref|YP_008798190.1| - 0.058 12.7 0.0 0.27 10.6 0.0 2.1 2 0 0 2 2 2 0 AAA domain ABC_ATPase PF09818.4 gi|557695136|ref|YP_008798190.1| - 0.064 11.8 3.7 3.4 6.1 0.1 3.6 4 1 0 4 4 4 0 Predicted ATPase of the ABC class AAA_15 PF13175.1 gi|557695136|ref|YP_008798190.1| - 0.065 12.2 0.1 0.65 8.9 0.0 2.4 3 0 0 3 3 3 0 AAA ATPase domain MMR_HSR1 PF01926.18 gi|557695136|ref|YP_008798190.1| - 0.076 12.9 0.7 0.26 11.2 0.2 2.3 2 1 0 2 2 2 0 50S ribosome-binding GTPase AAA_16 PF13191.1 gi|557695136|ref|YP_008798190.1| - 0.15 12.0 2.0 0.62 10.0 0.0 2.8 2 2 0 2 2 2 0 AAA ATPase domain Bmp PF02608.9 gi|557695137|ref|YP_008798191.1| - 8.4e-33 113.4 0.6 8.4e-33 113.4 0.4 1.6 2 0 0 2 2 2 1 Basic membrane protein SpoVAD PF07451.6 gi|557695137|ref|YP_008798191.1| - 0.0017 16.8 0.2 0.0032 15.9 0.2 1.4 1 0 0 1 1 1 1 Stage V sporulation protein AD (SpoVAD) UCR_Fe-S_N PF10399.4 gi|557695137|ref|YP_008798191.1| - 0.0018 17.3 1.3 0.0018 17.3 0.9 2.2 2 0 0 2 2 2 1 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal CytB6-F_Fe-S PF08802.5 gi|557695137|ref|YP_008798191.1| - 0.025 14.5 1.2 0.025 14.5 0.8 2.4 2 0 0 2 2 2 0 Cytochrome B6-F complex Fe-S subunit Adenine_deam_C PF13382.1 gi|557695138|ref|YP_008798192.1| - 6.7e-64 214.1 0.0 1.2e-63 213.3 0.0 1.4 1 0 0 1 1 1 1 Adenine deaminase C-terminal domain Amidohydro_1 PF01979.15 gi|557695138|ref|YP_008798192.1| - 3.2e-23 82.9 0.0 1.6e-21 77.3 0.0 2.2 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_4 PF13147.1 gi|557695138|ref|YP_008798192.1| - 4.4e-12 46.6 0.9 1e-10 42.1 0.6 2.5 1 1 0 1 1 1 1 Amidohydrolase Amidohydro_5 PF13594.1 gi|557695138|ref|YP_008798192.1| - 5.1e-10 39.0 0.2 2e-09 37.1 0.2 2.1 1 0 0 1 1 1 1 Amidohydrolase Amidohydro_3 PF07969.6 gi|557695138|ref|YP_008798192.1| - 8.3e-08 31.8 1.2 3.9e-06 26.3 0.0 2.3 2 0 0 2 2 2 2 Amidohydrolase family Bac_luciferase PF00296.15 gi|557695139|ref|YP_008798193.1| - 1.9e-65 221.0 1.2 2.1e-65 220.8 0.8 1.0 1 0 0 1 1 1 1 Luciferase-like monooxygenase Amidohydro_1 PF01979.15 gi|557695140|ref|YP_008798194.1| - 8.6e-53 180.1 0.1 1e-52 179.8 0.0 1.1 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.6 gi|557695140|ref|YP_008798194.1| - 4.5e-16 59.0 0.3 3e-12 46.4 0.1 2.4 1 1 1 2 2 2 2 Amidohydrolase family Amidohydro_4 PF13147.1 gi|557695140|ref|YP_008798194.1| - 1.1e-15 58.4 0.0 5.2e-15 56.2 0.0 2.0 1 1 0 1 1 1 1 Amidohydrolase Amidohydro_5 PF13594.1 gi|557695140|ref|YP_008798194.1| - 1.5e-11 43.9 0.1 4.3e-11 42.4 0.0 1.9 2 0 0 2 2 2 1 Amidohydrolase TatD_DNase PF01026.16 gi|557695140|ref|YP_008798194.1| - 0.031 13.4 0.0 0.051 12.7 0.0 1.3 1 0 0 1 1 1 0 TatD related DNase FAD_binding_5 PF00941.16 gi|557695141|ref|YP_008798195.1| - 4.7e-32 110.7 0.1 6.5e-32 110.3 0.1 1.2 1 0 0 1 1 1 1 FAD binding domain in molybdopterin dehydrogenase CO_deh_flav_C PF03450.12 gi|557695141|ref|YP_008798195.1| - 2.4e-09 37.0 0.0 5.1e-09 36.0 0.0 1.6 1 0 0 1 1 1 1 CO dehydrogenase flavoprotein C-terminal domain Fer2_2 PF01799.15 gi|557695142|ref|YP_008798196.1| - 2.3e-25 88.2 0.0 5.5e-25 87.0 0.0 1.6 2 0 0 2 2 2 1 [2Fe-2S] binding domain Fer2 PF00111.22 gi|557695142|ref|YP_008798196.1| - 1.3e-06 28.0 0.4 1.3e-06 28.0 0.3 2.0 1 1 1 2 2 2 1 2Fe-2S iron-sulfur cluster binding domain Fer2_3 PF13085.1 gi|557695142|ref|YP_008798196.1| - 0.0029 17.4 0.0 0.0047 16.7 0.0 1.4 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer2_4 PF13510.1 gi|557695142|ref|YP_008798196.1| - 0.0041 16.8 0.8 0.011 15.5 0.1 2.1 2 1 0 2 2 2 1 2Fe-2S iron-sulfur cluster binding domain Ald_Xan_dh_C2 PF02738.13 gi|557695143|ref|YP_008798197.1| - 2.1e-147 491.7 0.2 2.8e-147 491.3 0.1 1.1 1 0 0 1 1 1 1 Molybdopterin-binding domain of aldehyde dehydrogenase Ald_Xan_dh_C PF01315.17 gi|557695143|ref|YP_008798197.1| - 9.3e-28 96.5 0.0 2e-27 95.4 0.0 1.6 1 0 0 1 1 1 1 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain NTP_transf_2 PF01909.18 gi|557695144|ref|YP_008798198.1| - 1e-10 41.8 0.0 1.3e-10 41.4 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyltransferase domain DNA_pol_B_palm PF14792.1 gi|557695144|ref|YP_008798198.1| - 0.0086 16.1 0.0 0.0094 15.9 0.0 1.1 1 0 0 1 1 1 1 DNA polymerase beta palm Pox_A51 PF04948.8 gi|557695144|ref|YP_008798198.1| - 0.12 11.0 0.0 0.15 10.6 0.0 1.1 1 0 0 1 1 1 0 Poxvirus A51 protein OTCace_N PF02729.16 gi|557695145|ref|YP_008798199.1| - 4.4e-41 139.8 0.0 6.5e-41 139.3 0.0 1.3 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain OTCace PF00185.19 gi|557695145|ref|YP_008798199.1| - 1.6e-36 125.5 0.0 2.8e-36 124.7 0.0 1.4 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain Methyltransf_31 PF13847.1 gi|557695145|ref|YP_008798199.1| - 0.11 12.1 0.0 0.46 10.0 0.0 2.0 2 0 0 2 2 2 0 Methyltransferase domain AA_kinase PF00696.23 gi|557695146|ref|YP_008798200.1| - 7.5e-38 130.4 0.0 8.5e-38 130.2 0.0 1.0 1 0 0 1 1 1 1 Amino acid kinase family GntR PF00392.16 gi|557695146|ref|YP_008798200.1| - 0.1 12.0 0.0 9 5.8 0.0 2.5 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family PALP PF00291.20 gi|557695147|ref|YP_008798201.1| - 1e-72 244.9 0.0 1.3e-72 244.6 0.0 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme V4R PF02830.13 gi|557695148|ref|YP_008798202.1| - 5.4e-14 51.7 3.0 8e-14 51.2 2.1 1.3 1 0 0 1 1 1 1 V4R domain PALP PF00291.20 gi|557695149|ref|YP_008798203.1| - 2.9e-63 213.9 0.0 3.4e-63 213.7 0.0 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme OTCace PF00185.19 gi|557695150|ref|YP_008798204.1| - 1.6e-41 141.7 0.0 2.9e-41 140.9 0.0 1.3 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain OTCace_N PF02729.16 gi|557695150|ref|YP_008798204.1| - 4e-32 110.8 0.0 5.8e-32 110.2 0.0 1.2 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain UbiA PF01040.13 gi|557695151|ref|YP_008798205.1| - 1.9e-37 128.9 30.5 5.5e-37 127.3 21.1 1.7 1 1 0 1 1 1 1 UbiA prenyltransferase family Pyridox_oxidase PF01243.15 gi|557695152|ref|YP_008798206.1| - 0.00031 20.7 0.0 0.00044 20.2 0.0 1.2 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase MFS_1 PF07690.11 gi|557695153|ref|YP_008798207.1| - 1.6e-33 115.9 58.6 3.6e-25 88.4 23.7 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_2 PF13347.1 gi|557695153|ref|YP_008798207.1| - 0.0031 15.9 0.2 0.0031 15.9 0.1 3.9 2 2 2 4 4 4 2 MFS/sugar transport protein ATP-synt_ab PF00006.20 gi|557695154|ref|YP_008798208.1| - 7.1e-64 215.2 0.0 9.3e-64 214.8 0.0 1.2 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_C PF00306.22 gi|557695154|ref|YP_008798208.1| - 3.4e-16 59.7 0.2 6.1e-16 58.8 0.1 1.5 1 0 0 1 1 1 1 ATP synthase alpha/beta chain, C terminal domain ATP-synt_ab_N PF02874.18 gi|557695154|ref|YP_008798208.1| - 5.3e-10 39.3 5.9 5.3e-10 39.3 4.1 1.7 2 0 0 2 2 2 1 ATP synthase alpha/beta family, beta-barrel domain HAS-barrel PF09378.5 gi|557695154|ref|YP_008798208.1| - 2.2e-05 24.2 3.8 0.00026 20.8 1.6 2.5 2 0 0 2 2 2 1 HAS barrel domain ATP-synt_ab PF00006.20 gi|557695155|ref|YP_008798209.1| - 3.5e-95 317.5 0.0 4.6e-95 317.1 0.0 1.1 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_C PF00306.22 gi|557695155|ref|YP_008798209.1| - 4.4e-17 62.5 0.5 7.8e-17 61.7 0.4 1.4 1 0 0 1 1 1 1 ATP synthase alpha/beta chain, C terminal domain ATP-synt_ab_N PF02874.18 gi|557695155|ref|YP_008798209.1| - 1.9e-11 44.0 0.3 4.9e-11 42.6 0.2 1.8 1 0 0 1 1 1 1 ATP synthase alpha/beta family, beta-barrel domain AAA_22 PF13401.1 gi|557695155|ref|YP_008798209.1| - 0.037 14.1 0.1 0.091 12.9 0.0 1.8 1 1 0 1 1 1 0 AAA domain RnfC_N PF13375.1 gi|557695155|ref|YP_008798209.1| - 0.17 11.6 0.0 1.9 8.2 0.0 2.4 3 0 0 3 3 3 0 RnfC Barrel sandwich hybrid domain DUF853 PF05872.7 gi|557695155|ref|YP_008798209.1| - 0.24 9.7 0.1 0.37 9.0 0.1 1.2 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF853) ABC_tran PF00005.22 gi|557695156|ref|YP_008798210.1| - 1.5e-27 96.5 0.0 2.7e-27 95.7 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|557695156|ref|YP_008798210.1| - 1.3e-10 41.7 0.1 7e-05 22.9 0.0 2.1 1 1 1 2 2 2 2 AAA domain AAA_29 PF13555.1 gi|557695156|ref|YP_008798210.1| - 2e-05 24.0 0.0 5.4e-05 22.6 0.0 1.7 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|557695156|ref|YP_008798210.1| - 0.0013 19.1 0.2 0.0024 18.2 0.1 1.4 1 1 0 1 1 1 1 AAA domain AAA PF00004.24 gi|557695156|ref|YP_008798210.1| - 0.0038 17.4 0.4 0.044 13.9 0.3 2.2 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) DUF258 PF03193.11 gi|557695156|ref|YP_008798210.1| - 0.0051 16.0 0.0 0.0091 15.1 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 Arch_ATPase PF01637.13 gi|557695156|ref|YP_008798210.1| - 0.0088 15.7 0.2 0.02 14.6 0.1 1.6 1 1 1 2 2 2 1 Archaeal ATPase DUF4162 PF13732.1 gi|557695156|ref|YP_008798210.1| - 0.0089 16.5 0.0 0.022 15.2 0.0 1.7 2 0 0 2 2 1 1 Domain of unknown function (DUF4162) UPF0079 PF02367.12 gi|557695156|ref|YP_008798210.1| - 0.012 15.2 0.2 0.03 13.9 0.1 1.7 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 AAA_15 PF13175.1 gi|557695156|ref|YP_008798210.1| - 0.018 14.1 0.0 3.9 6.4 0.0 2.2 2 0 0 2 2 2 0 AAA ATPase domain AAA_16 PF13191.1 gi|557695156|ref|YP_008798210.1| - 0.019 14.9 0.1 0.095 12.6 0.1 2.1 1 1 0 1 1 1 0 AAA ATPase domain BCA_ABC_TP_C PF12399.3 gi|557695156|ref|YP_008798210.1| - 0.041 13.5 0.1 0.096 12.3 0.0 1.7 1 0 0 1 1 1 0 Branched-chain amino acid ATP-binding cassette transporter Rad17 PF03215.10 gi|557695156|ref|YP_008798210.1| - 0.049 12.3 0.1 0.13 10.9 0.0 1.6 2 0 0 2 2 2 0 Rad17 cell cycle checkpoint protein AAA_22 PF13401.1 gi|557695156|ref|YP_008798210.1| - 0.052 13.6 0.4 0.24 11.5 0.2 2.3 1 1 1 2 2 2 0 AAA domain AAA_13 PF13166.1 gi|557695156|ref|YP_008798210.1| - 0.058 11.8 0.0 0.091 11.2 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.1 gi|557695156|ref|YP_008798210.1| - 0.088 13.1 0.9 0.3 11.3 0.6 2.2 1 1 0 1 1 1 0 AAA domain Mg_chelatase PF01078.16 gi|557695156|ref|YP_008798210.1| - 0.1 11.7 0.0 0.2 10.7 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_28 PF13521.1 gi|557695156|ref|YP_008798210.1| - 0.12 12.3 0.2 0.31 10.9 0.1 1.7 1 0 0 1 1 1 0 AAA domain SRP54 PF00448.17 gi|557695156|ref|YP_008798210.1| - 0.15 11.4 0.5 1.1 8.7 0.1 2.1 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain SMC_N PF02463.14 gi|557695156|ref|YP_008798210.1| - 0.16 11.1 0.0 3.3 6.8 0.0 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_10 PF12846.2 gi|557695156|ref|YP_008798210.1| - 0.17 11.2 0.2 0.46 9.8 0.0 1.7 2 0 0 2 2 2 0 AAA-like domain AAA_19 PF13245.1 gi|557695156|ref|YP_008798210.1| - 0.2 11.3 1.4 0.67 9.7 0.1 2.4 3 1 0 3 3 2 0 Part of AAA domain AAA_17 PF13207.1 gi|557695156|ref|YP_008798210.1| - 0.5 11.1 1.9 1.1 10.0 1.3 1.8 1 1 0 1 1 1 0 AAA domain ABC2_membrane_3 PF12698.2 gi|557695157|ref|YP_008798211.1| - 2.7e-09 36.5 26.3 3.8e-09 36.0 18.2 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein CcmB PF03379.8 gi|557695157|ref|YP_008798211.1| - 0.0068 15.6 6.2 0.0068 15.6 4.3 2.8 2 1 1 3 3 3 1 CcmB protein ABC2_membrane_2 PF12679.2 gi|557695157|ref|YP_008798211.1| - 0.14 10.9 23.4 0.59 8.9 16.2 2.1 1 1 0 1 1 1 0 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|557695158|ref|YP_008798212.1| - 5.1e-06 25.8 26.6 7.3e-06 25.3 18.4 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.2 gi|557695158|ref|YP_008798212.1| - 1e-05 24.5 16.0 1.3e-05 24.2 11.1 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane PF01061.19 gi|557695158|ref|YP_008798212.1| - 0.00026 20.2 21.2 0.00026 20.2 14.7 1.6 2 0 0 2 2 2 1 ABC-2 type transporter ADH_zinc_N PF00107.21 gi|557695159|ref|YP_008798213.1| - 1.2e-23 83.0 0.0 2e-23 82.3 0.0 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_N PF08240.7 gi|557695159|ref|YP_008798213.1| - 3.9e-19 68.4 0.2 7e-19 67.5 0.2 1.4 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain NADH_4Fe-4S PF10589.4 gi|557695159|ref|YP_008798213.1| - 0.00019 20.4 0.7 0.00044 19.3 0.5 1.5 1 0 0 1 1 1 1 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region ADH_zinc_N_2 PF13602.1 gi|557695159|ref|YP_008798213.1| - 0.00056 20.7 0.0 0.00099 20.0 0.0 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase 2-Hacid_dh_C PF02826.14 gi|557695159|ref|YP_008798213.1| - 0.032 13.3 0.0 0.06 12.5 0.0 1.4 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Peripla_BP_3 PF13377.1 gi|557695159|ref|YP_008798213.1| - 0.044 13.7 0.0 0.068 13.1 0.0 1.5 1 0 0 1 1 1 0 Periplasmic binding protein-like domain ADH_zinc_N PF00107.21 gi|557695160|ref|YP_008798214.1| - 7.9e-29 99.8 0.0 1.5e-28 98.9 0.0 1.5 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_N PF08240.7 gi|557695160|ref|YP_008798214.1| - 1.2e-27 95.7 0.4 3.1e-27 94.4 0.1 1.8 2 0 0 2 2 2 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N_2 PF13602.1 gi|557695160|ref|YP_008798214.1| - 2.6e-05 25.1 0.0 4.9e-05 24.2 0.0 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase TrkA_N PF02254.13 gi|557695160|ref|YP_008798214.1| - 0.059 13.3 0.1 0.11 12.4 0.1 1.4 1 0 0 1 1 1 0 TrkA-N domain tRNA_edit PF04073.10 gi|557695161|ref|YP_008798215.1| - 3.4e-30 104.4 0.0 4e-30 104.1 0.0 1.1 1 0 0 1 1 1 1 Aminoacyl-tRNA editing domain TauE PF01925.14 gi|557695162|ref|YP_008798216.1| - 2.8e-26 92.4 42.3 3.5e-26 92.1 29.3 1.0 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE DUF2116 PF09889.4 gi|557695163|ref|YP_008798217.1| - 0.073 12.8 0.4 0.073 12.8 0.3 2.3 3 0 0 3 3 3 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) TrbC PF04956.8 gi|557695163|ref|YP_008798217.1| - 0.09 12.8 4.2 5.3 7.1 0.0 2.7 2 1 0 2 2 2 0 TrbC/VIRB2 family HTH_31 PF13560.1 gi|557695164|ref|YP_008798218.1| - 1.6e-06 28.2 0.0 8.1e-06 25.9 0.0 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_19 PF12844.2 gi|557695164|ref|YP_008798218.1| - 2.9e-06 27.2 0.2 3.7e-05 23.6 0.1 2.4 3 0 0 3 3 3 1 Helix-turn-helix domain HTH_3 PF01381.17 gi|557695164|ref|YP_008798218.1| - 8.8e-06 25.4 0.2 3.4e-05 23.5 0.1 2.0 2 0 0 2 2 2 1 Helix-turn-helix DUF1973 PF09315.6 gi|557695164|ref|YP_008798218.1| - 0.13 11.6 0.0 0.23 10.8 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1973) DUF4131 PF13567.1 gi|557695165|ref|YP_008798219.1| - 0.0047 16.3 0.5 0.006 16.0 0.4 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4131) UPF0182 PF03699.8 gi|557695166|ref|YP_008798220.1| - 1.2e-36 125.9 2.4 1.2e-36 125.9 1.6 2.7 2 1 0 2 2 2 1 Uncharacterised protein family (UPF0182) TPP_enzyme_N PF02776.13 gi|557695167|ref|YP_008798221.1| - 2.4e-41 141.0 0.1 2.3e-40 137.8 0.0 2.2 2 1 0 2 2 2 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.16 gi|557695167|ref|YP_008798221.1| - 4.2e-16 58.8 0.0 1.1e-15 57.4 0.0 1.7 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_M PF00205.17 gi|557695167|ref|YP_008798221.1| - 0.00067 19.4 0.0 0.0019 17.9 0.0 1.8 1 1 0 1 1 1 1 Thiamine pyrophosphate enzyme, central domain XFP_N PF09364.5 gi|557695167|ref|YP_008798221.1| - 0.03 12.9 0.2 0.054 12.0 0.1 1.4 1 1 0 1 1 1 0 XFP N-terminal domain PMT PF02366.13 gi|557695168|ref|YP_008798222.1| - 8e-06 25.3 10.6 8e-06 25.3 7.3 3.9 4 2 1 5 5 5 1 Dolichyl-phosphate-mannose-protein mannosyltransferase PMT_2 PF13231.1 gi|557695168|ref|YP_008798222.1| - 0.00069 19.5 23.9 0.00069 19.5 16.6 3.5 3 1 0 4 4 4 1 Dolichyl-phosphate-mannose-protein mannosyltransferase Glyco_transf_22 PF03901.12 gi|557695168|ref|YP_008798222.1| - 0.0046 16.0 5.7 0.0046 16.0 3.9 2.8 3 0 0 3 3 3 1 Alg9-like mannosyltransferase family Sperm_Ag_HE2 PF05324.8 gi|557695169|ref|YP_008798223.1| - 0.2 11.5 1.3 0.38 10.7 0.0 2.0 2 0 0 2 2 2 0 Sperm antigen HE2 DUF788 PF05620.6 gi|557695170|ref|YP_008798224.1| - 1.2 9.0 4.1 0.86 9.4 0.4 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF788) PRC PF05239.11 gi|557695171|ref|YP_008798225.1| - 4.2e-05 23.3 0.4 6.7e-05 22.6 0.3 1.4 1 1 0 1 1 1 1 PRC-barrel domain Lar_restr_allev PF14354.1 gi|557695171|ref|YP_008798225.1| - 0.026 14.8 1.0 0.044 14.0 0.7 1.3 1 0 0 1 1 1 0 Restriction alleviation protein Lar DZR PF12773.2 gi|557695171|ref|YP_008798225.1| - 0.037 13.8 0.4 0.06 13.1 0.3 1.3 1 0 0 1 1 1 0 Double zinc ribbon Zn_Tnp_IS1595 PF12760.2 gi|557695171|ref|YP_008798225.1| - 0.048 13.4 5.1 0.067 13.0 3.6 1.2 1 0 0 1 1 1 0 Transposase zinc-ribbon domain DUF2256 PF10013.4 gi|557695171|ref|YP_008798225.1| - 0.17 11.6 2.9 0.11 12.3 0.8 1.5 1 1 1 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2256) C1_1 PF00130.17 gi|557695171|ref|YP_008798225.1| - 0.22 11.3 1.3 0.31 10.7 0.9 1.2 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) Sgf11 PF08209.6 gi|557695171|ref|YP_008798225.1| - 0.99 8.7 2.9 11 5.4 0.2 2.2 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) zf-RING_3 PF14369.1 gi|557695171|ref|YP_008798225.1| - 4.3 7.4 6.9 25 4.9 2.5 2.2 2 0 0 2 2 2 0 zinc-finger Ald_Xan_dh_C2 PF02738.13 gi|557695172|ref|YP_008798226.1| - 1.6e-151 505.3 0.0 1.9e-151 505.1 0.0 1.0 1 0 0 1 1 1 1 Molybdopterin-binding domain of aldehyde dehydrogenase Ald_Xan_dh_C PF01315.17 gi|557695172|ref|YP_008798226.1| - 1.1e-29 102.6 0.0 2.1e-29 101.8 0.0 1.5 1 0 0 1 1 1 1 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain MazG PF03819.12 gi|557695174|ref|YP_008798228.1| - 4.2e-12 45.8 0.0 5.3e-12 45.5 0.0 1.2 1 0 0 1 1 1 1 MazG nucleotide pyrophosphohydrolase domain MttA_Hcf106 PF02416.11 gi|557695175|ref|YP_008798229.1| - 3.9e-07 29.0 5.4 1.9e-06 26.8 3.7 2.2 1 1 0 1 1 1 1 mttA/Hcf106 family DUF677 PF05055.7 gi|557695175|ref|YP_008798229.1| - 0.066 11.8 0.0 0.078 11.6 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF677) CcdA PF07362.7 gi|557695175|ref|YP_008798229.1| - 0.075 12.9 0.1 0.11 12.4 0.0 1.3 1 0 0 1 1 1 0 Post-segregation antitoxin CcdA Nif11 PF07862.6 gi|557695175|ref|YP_008798229.1| - 0.12 12.3 0.1 0.19 11.7 0.0 1.4 1 0 0 1 1 1 0 Nitrogen fixation protein of unknown function