# --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- Peptidase_M24 PF00557.19 gi|345004011|ref|YP_004806864.1| - 6.3e-17 61.8 0.5 8.4e-17 61.4 0.3 1.2 1 0 0 1 1 1 1 Metallopeptidase family M24 PTA_PTB PF01515.14 gi|345004012|ref|YP_004806865.1| - 6.7e-95 317.8 0.4 9.1e-95 317.3 0.3 1.2 1 0 0 1 1 1 1 Phosphate acetyl/butaryl transferase Malic_M PF03949.10 gi|345004012|ref|YP_004806865.1| - 2.4e-67 227.1 0.7 7.3e-67 225.5 0.2 2.0 2 0 0 2 2 2 1 Malic enzyme, NAD binding domain malic PF00390.14 gi|345004012|ref|YP_004806865.1| - 3.2e-31 108.3 0.1 6e-29 100.9 0.1 2.6 1 1 0 1 1 1 1 Malic enzyme, N-terminal domain SBP_bac_5 PF00496.17 gi|345004014|ref|YP_004806867.1| - 1e-62 212.1 0.0 1.3e-62 211.7 0.0 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle TAT_signal PF10518.4 gi|345004014|ref|YP_004806867.1| - 5e-05 22.9 5.2 9.5e-05 22.0 3.6 1.5 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence UCR_Fe-S_N PF10399.4 gi|345004014|ref|YP_004806867.1| - 0.0011 18.1 1.1 0.0021 17.2 0.8 1.4 1 0 0 1 1 1 1 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal Pertactin PF03212.9 gi|345004014|ref|YP_004806867.1| - 0.14 11.8 2.4 5.9 6.6 0.1 2.7 2 1 0 3 3 3 0 Pertactin BPD_transp_1 PF00528.17 gi|345004015|ref|YP_004806868.1| - 1.4e-42 145.2 13.0 2.9e-42 144.3 9.0 1.5 1 0 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component Transport_MerF PF11431.3 gi|345004015|ref|YP_004806868.1| - 2.7 7.7 8.4 0.71 9.5 0.6 2.9 2 0 0 2 2 2 0 Membrane transport protein MerF BPD_transp_1 PF00528.17 gi|345004016|ref|YP_004806869.1| - 8.6e-31 106.8 11.5 8.6e-31 106.8 7.9 1.8 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.2 gi|345004016|ref|YP_004806869.1| - 1.3e-09 37.2 0.1 1.3e-09 37.2 0.0 2.0 2 0 0 2 2 2 1 N-terminal TM domain of oligopeptide transport permease C HTH_23 PF13384.1 gi|345004016|ref|YP_004806869.1| - 0.0033 17.0 0.3 1.4 8.7 0.0 2.5 2 0 0 2 2 2 2 Homeodomain-like domain ABC_tran PF00005.22 gi|345004017|ref|YP_004806870.1| - 4.5e-23 82.0 0.0 1.4e-22 80.4 0.0 1.8 1 1 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|345004017|ref|YP_004806870.1| - 5e-18 65.1 0.0 1.1e-17 64.1 0.0 1.6 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|345004017|ref|YP_004806870.1| - 1.5e-07 31.7 0.0 5.1e-06 26.6 0.0 2.3 3 0 0 3 3 3 1 AAA domain AAA_22 PF13401.1 gi|345004017|ref|YP_004806870.1| - 0.00024 21.2 1.0 0.15 12.2 0.0 2.3 1 1 0 2 2 2 2 AAA domain AAA_10 PF12846.2 gi|345004017|ref|YP_004806870.1| - 0.0023 17.4 0.0 0.039 13.3 0.0 2.0 1 1 1 2 2 2 1 AAA-like domain AAA_15 PF13175.1 gi|345004017|ref|YP_004806870.1| - 0.011 14.8 0.0 0.073 12.0 0.0 1.9 2 0 0 2 2 2 0 AAA ATPase domain AAA_25 PF13481.1 gi|345004017|ref|YP_004806870.1| - 0.017 14.5 0.0 0.27 10.6 0.0 2.3 2 0 0 2 2 2 0 AAA domain AAA_29 PF13555.1 gi|345004017|ref|YP_004806870.1| - 0.027 13.9 0.0 0.053 13.0 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain SMC_N PF02463.14 gi|345004017|ref|YP_004806870.1| - 0.038 13.2 0.1 1.8 7.7 0.0 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_16 PF13191.1 gi|345004017|ref|YP_004806870.1| - 0.092 12.7 0.9 0.26 11.2 0.6 1.8 1 1 0 1 1 1 0 AAA ATPase domain DUF87 PF01935.12 gi|345004017|ref|YP_004806870.1| - 0.094 12.5 0.0 0.21 11.3 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function DUF87 ATP-synt_ab PF00006.20 gi|345004017|ref|YP_004806870.1| - 0.11 11.9 0.0 0.21 11.0 0.0 1.4 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain DUF2075 PF09848.4 gi|345004017|ref|YP_004806870.1| - 0.17 10.7 0.0 0.49 9.3 0.0 1.7 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) AAA_23 PF13476.1 gi|345004017|ref|YP_004806870.1| - 0.25 11.6 0.0 0.48 10.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain ABC_tran PF00005.22 gi|345004018|ref|YP_004806871.1| - 3.1e-29 102.0 0.0 1.2e-28 100.0 0.0 1.9 1 1 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|345004018|ref|YP_004806871.1| - 4.2e-19 68.6 0.3 7.7e-19 67.8 0.2 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|345004018|ref|YP_004806871.1| - 1.6e-06 28.3 0.0 0.0006 19.8 0.0 2.1 2 0 0 2 2 2 2 AAA domain AAA_22 PF13401.1 gi|345004018|ref|YP_004806871.1| - 0.00079 19.5 0.0 0.46 10.6 0.0 2.5 2 1 0 2 2 2 2 AAA domain AAA_25 PF13481.1 gi|345004018|ref|YP_004806871.1| - 0.001 18.5 1.2 0.015 14.6 0.2 2.8 2 1 0 2 2 2 1 AAA domain AAA_29 PF13555.1 gi|345004018|ref|YP_004806871.1| - 0.046 13.2 0.1 0.088 12.3 0.1 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_5 PF07728.9 gi|345004018|ref|YP_004806871.1| - 0.08 12.6 0.1 1.6 8.4 0.1 2.4 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) DUF258 PF03193.11 gi|345004018|ref|YP_004806871.1| - 0.094 11.9 0.0 0.17 11.0 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AIG1 PF04548.11 gi|345004018|ref|YP_004806871.1| - 0.16 11.0 0.1 0.25 10.4 0.1 1.3 1 0 0 1 1 1 0 AIG1 family CBS PF00571.23 gi|345004019|ref|YP_004806872.1| - 6.7e-29 99.4 5.3 2.9e-14 52.5 0.3 2.1 2 0 0 2 2 2 2 CBS domain EamA PF00892.15 gi|345004020|ref|YP_004806873.1| - 3.2e-30 104.7 24.1 6e-16 58.6 6.2 2.1 2 0 0 2 2 2 2 EamA-like transporter family TPT PF03151.11 gi|345004020|ref|YP_004806873.1| - 0.027 14.1 13.9 0.061 12.9 5.5 2.7 2 2 0 2 2 2 0 Triose-phosphate Transporter family DUF1684 PF07920.6 gi|345004021|ref|YP_004806874.1| - 1e-49 168.0 0.2 1.4e-49 167.6 0.1 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1684) FmdA_AmdA PF03069.10 gi|345004022|ref|YP_004806875.1| - 1.7e-52 178.3 1.7 8.9e-52 175.9 1.2 1.8 1 1 0 1 1 1 1 Acetamidase/Formamidase family DZR PF12773.2 gi|345004022|ref|YP_004806875.1| - 0.035 13.9 0.2 0.07 12.9 0.2 1.4 1 0 0 1 1 1 0 Double zinc ribbon UPF0547 PF10571.4 gi|345004022|ref|YP_004806875.1| - 0.053 13.2 5.5 0.63 9.7 3.8 2.3 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 DNA_ligase_ZBD PF03119.11 gi|345004022|ref|YP_004806875.1| - 0.2 11.4 4.4 15 5.3 0.0 3.0 2 1 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain zinc_ribbon_5 PF13719.1 gi|345004022|ref|YP_004806875.1| - 1.5 8.4 3.4 6.9 6.3 0.3 2.4 1 1 1 2 2 2 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|345004022|ref|YP_004806875.1| - 1.5 8.5 3.4 5.7 6.7 0.2 2.4 1 1 1 2 2 2 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|345004022|ref|YP_004806875.1| - 1.6 8.0 8.5 0.073 12.4 1.2 2.3 2 0 0 2 2 2 0 TFIIB zinc-binding DNA_RNApol_7kD PF03604.8 gi|345004022|ref|YP_004806875.1| - 2.8 7.4 5.0 30 4.1 3.5 2.2 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit zf-ribbon_3 PF13248.1 gi|345004022|ref|YP_004806875.1| - 3.2 7.0 6.3 10 5.5 0.6 2.3 1 1 2 3 3 3 0 zinc-ribbon domain zf-tcix PF14952.1 gi|345004022|ref|YP_004806875.1| - 3.6 6.9 4.4 13 5.1 0.3 2.2 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding Fic PF02661.13 gi|345004023|ref|YP_004806876.1| - 2.3e-18 66.6 0.0 6.8e-18 65.1 0.0 1.8 1 0 0 1 1 1 1 Fic/DOC family Fic_N PF13784.1 gi|345004023|ref|YP_004806876.1| - 3.7e-13 49.1 0.0 6.8e-13 48.2 0.0 1.5 1 0 0 1 1 1 1 Fic/DOC family N-terminal TrmB PF01978.14 gi|345004023|ref|YP_004806876.1| - 4.4e-06 26.2 0.8 9.7e-05 22.0 0.1 2.4 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_13 PF11972.3 gi|345004023|ref|YP_004806876.1| - 0.00078 19.2 0.0 0.0025 17.6 0.0 1.8 1 0 0 1 1 1 1 HTH DNA binding domain MarR_2 PF12802.2 gi|345004023|ref|YP_004806876.1| - 0.0024 17.4 0.3 0.0044 16.6 0.2 1.4 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|345004023|ref|YP_004806876.1| - 0.019 14.3 0.0 0.036 13.4 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding DUF4172 PF13776.1 gi|345004023|ref|YP_004806876.1| - 0.035 14.2 0.0 0.068 13.2 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4172) GntR PF00392.16 gi|345004023|ref|YP_004806876.1| - 0.052 12.9 0.6 0.21 11.0 0.1 2.1 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family HTH_27 PF13463.1 gi|345004023|ref|YP_004806876.1| - 0.076 13.3 0.0 0.21 11.9 0.0 1.7 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_17 PF12728.2 gi|345004023|ref|YP_004806876.1| - 0.085 13.1 0.1 0.2 11.9 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_29 PF13551.1 gi|345004023|ref|YP_004806876.1| - 0.087 12.9 0.1 0.22 11.6 0.0 1.8 1 1 0 1 1 1 0 Winged helix-turn helix Methyltransf_12 PF08242.7 gi|345004024|ref|YP_004806877.1| - 1e-05 25.9 0.0 2.5e-05 24.6 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|345004024|ref|YP_004806877.1| - 2.6e-05 23.9 0.0 5.3e-05 23.0 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Rsm22 PF09243.5 gi|345004024|ref|YP_004806877.1| - 0.00041 19.4 0.0 0.00062 18.8 0.0 1.2 1 0 0 1 1 1 1 Mitochondrial small ribosomal subunit Rsm22 Methyltransf_18 PF12847.2 gi|345004024|ref|YP_004806877.1| - 0.0032 18.0 0.0 0.014 16.0 0.0 2.1 1 1 0 1 1 1 1 Methyltransferase domain PDH PF02153.12 gi|345004025|ref|YP_004806878.1| - 2e-10 40.0 0.2 7.9e-10 38.0 0.1 1.8 1 1 0 1 1 1 1 Prephenate dehydrogenase GFO_IDH_MocA PF01408.17 gi|345004025|ref|YP_004806878.1| - 0.054 14.0 1.9 0.12 12.9 0.0 2.3 3 0 0 3 3 3 0 Oxidoreductase family, NAD-binding Rossmann fold F420_oxidored PF03807.12 gi|345004025|ref|YP_004806878.1| - 0.084 13.3 0.2 0.37 11.2 0.0 2.2 3 0 0 3 3 3 0 NADP oxidoreductase coenzyme F420-dependent Creatinase_N PF01321.13 gi|345004025|ref|YP_004806878.1| - 0.11 13.0 0.2 0.48 10.9 0.0 1.9 2 0 0 2 2 2 0 Creatinase/Prolidase N-terminal domain Peptidase_M24 PF00557.19 gi|345004026|ref|YP_004806879.1| - 3.5e-40 137.7 1.0 5.8e-40 137.0 0.7 1.4 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.13 gi|345004026|ref|YP_004806879.1| - 2.8e-06 27.8 0.1 6.8e-06 26.5 0.0 1.6 1 0 0 1 1 1 1 Creatinase/Prolidase N-terminal domain DUF1100 PF06500.6 gi|345004026|ref|YP_004806879.1| - 0.031 12.8 0.0 0.045 12.3 0.0 1.2 1 0 0 1 1 1 0 Alpha/beta hydrolase of unknown function (DUF1100) Diphthamide_syn PF01866.12 gi|345004027|ref|YP_004806880.1| - 3.7e-95 318.7 0.0 4.4e-95 318.4 0.0 1.1 1 0 0 1 1 1 1 Putative diphthamide synthesis protein Acetyltransf_1 PF00583.19 gi|345004029|ref|YP_004806882.1| - 3e-12 46.3 0.3 4.6e-12 45.8 0.2 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|345004029|ref|YP_004806882.1| - 8.2e-07 29.1 0.0 9.4e-07 28.9 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|345004029|ref|YP_004806882.1| - 1.6e-06 28.2 0.0 1.9e-06 28.0 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|345004029|ref|YP_004806882.1| - 0.00025 21.1 0.0 0.00037 20.6 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|345004029|ref|YP_004806882.1| - 0.00067 19.5 0.0 0.0011 18.8 0.0 1.5 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|345004029|ref|YP_004806882.1| - 0.00082 19.0 0.0 0.0012 18.5 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_4 PF13420.1 gi|345004029|ref|YP_004806882.1| - 0.027 14.4 0.0 0.032 14.1 0.0 1.1 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Trypsin_2 PF13365.1 gi|345004030|ref|YP_004806883.1| - 5.2e-17 61.9 1.0 9.1e-17 61.1 0.7 1.4 1 0 0 1 1 1 1 Trypsin-like peptidase domain Trypsin PF00089.21 gi|345004030|ref|YP_004806883.1| - 5e-12 45.8 1.4 1.4e-11 44.4 0.9 1.6 1 1 0 1 1 1 1 Trypsin PDZ_2 PF13180.1 gi|345004030|ref|YP_004806883.1| - 6e-12 45.2 0.1 1.1e-11 44.4 0.0 1.4 1 0 0 1 1 1 1 PDZ domain Pico_P2A PF00947.14 gi|345004030|ref|YP_004806883.1| - 0.1 12.4 0.0 0.25 11.1 0.0 1.6 1 0 0 1 1 1 0 Picornavirus core protein 2A 4HBT PF03061.17 gi|345004031|ref|YP_004806884.1| - 2e-16 59.8 0.1 2.8e-16 59.4 0.1 1.2 1 0 0 1 1 1 1 Thioesterase superfamily MaoC_dehydratas PF01575.14 gi|345004031|ref|YP_004806884.1| - 0.084 12.2 0.0 0.15 11.4 0.0 1.4 1 0 0 1 1 1 0 MaoC like domain DUF604 PF04646.7 gi|345004031|ref|YP_004806884.1| - 0.12 11.5 0.0 0.16 11.1 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function, DUF604 AstE_AspA PF04952.9 gi|345004032|ref|YP_004806885.1| - 1.8e-61 207.6 0.0 2.1e-61 207.4 0.0 1.0 1 0 0 1 1 1 1 Succinylglutamate desuccinylase / Aspartoacylase family DUF1786 PF08735.5 gi|345004032|ref|YP_004806885.1| - 0.084 12.0 0.0 0.14 11.2 0.0 1.3 1 0 0 1 1 1 0 Putative pyruvate format-lyase activating enzyme (DUF1786) DNase-RNase PF02577.9 gi|345004033|ref|YP_004806886.1| - 4.1e-35 119.9 0.0 4.6e-35 119.7 0.0 1.0 1 0 0 1 1 1 1 Bifunctional nuclease DUF555 PF04475.7 gi|345004034|ref|YP_004806887.1| - 5e-26 90.6 0.0 6e-26 90.4 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF555) UPF0058 PF01893.11 gi|345004035|ref|YP_004806888.1| - 3.6e-18 65.3 0.0 3.8e-18 65.3 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein family UPF0058 Hexapep PF00132.19 gi|345004036|ref|YP_004806889.1| - 3.3e-09 35.8 3.0 5e-08 32.1 0.1 2.6 3 0 0 3 3 3 2 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|345004036|ref|YP_004806889.1| - 2.8e-07 29.9 0.5 2.8e-07 29.9 0.3 2.7 3 0 0 3 3 3 1 Hexapeptide repeat of succinyl-transferase MS_channel PF00924.13 gi|345004037|ref|YP_004806890.1| - 2.7e-16 59.5 2.3 6.1e-16 58.3 1.6 1.6 1 0 0 1 1 1 1 Mechanosensitive ion channel TM_helix PF05552.7 gi|345004037|ref|YP_004806890.1| - 8e-05 22.2 0.0 8e-05 22.2 0.0 3.7 4 0 0 4 4 4 2 Conserved TM helix DisA_N PF02457.11 gi|345004038|ref|YP_004806891.1| - 1.9e-24 85.1 0.0 4e-24 84.0 0.0 1.6 1 0 0 1 1 1 1 DisA bacterial checkpoint controller nucleotide-binding UPF0118 PF01594.11 gi|345004039|ref|YP_004806892.1| - 6e-24 84.6 31.7 9e-24 84.0 22.0 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF20 Big_2 PF02368.13 gi|345004040|ref|YP_004806893.1| - 0.12 12.3 0.1 0.2 11.5 0.1 1.3 1 0 0 1 1 1 0 Bacterial Ig-like domain (group 2) FBPase PF00316.15 gi|345004041|ref|YP_004806894.1| - 5.5e-63 212.7 0.0 6.1e-63 212.5 0.0 1.0 1 0 0 1 1 1 1 Fructose-1-6-bisphosphatase Inositol_P PF00459.20 gi|345004041|ref|YP_004806894.1| - 2e-05 24.0 0.1 5e-05 22.7 0.0 1.7 2 0 0 2 2 2 1 Inositol monophosphatase family DeoC PF01791.4 gi|345004042|ref|YP_004806895.1| - 2.8e-34 118.4 0.1 3.3e-34 118.2 0.0 1.1 1 0 0 1 1 1 1 DeoC/LacD family aldolase AP_endonuc_2 PF01261.19 gi|345004042|ref|YP_004806895.1| - 0.0073 15.6 0.0 0.015 14.6 0.0 1.6 1 1 0 1 1 1 1 Xylose isomerase-like TIM barrel Glyco_hydro_3_C PF01915.17 gi|345004042|ref|YP_004806895.1| - 0.037 13.5 0.5 0.046 13.2 0.3 1.2 1 0 0 1 1 1 0 Glycosyl hydrolase family 3 C-terminal domain HHH_5 PF14520.1 gi|345004043|ref|YP_004806896.1| - 1.8e-08 34.4 0.0 8.6e-06 25.8 0.0 2.6 2 1 0 2 2 2 2 Helix-hairpin-helix domain DUF4332 PF14229.1 gi|345004043|ref|YP_004806896.1| - 0.002 18.1 0.0 0.0054 16.6 0.0 1.8 1 0 0 1 1 1 1 Domain of unknown function (DUF4332) Nop14 PF04147.7 gi|345004043|ref|YP_004806896.1| - 0.34 8.7 8.9 0.41 8.5 6.1 1.0 1 0 0 1 1 1 0 Nop14-like family 3HCDH_N PF02737.13 gi|345004044|ref|YP_004806897.1| - 1.1e-60 204.3 0.9 1.5e-60 203.9 0.6 1.1 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 3HCDH PF00725.17 gi|345004044|ref|YP_004806897.1| - 1.8e-34 117.9 0.1 3e-33 114.1 0.0 2.4 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NAD_binding_2 PF03446.10 gi|345004044|ref|YP_004806897.1| - 0.00065 19.5 2.1 0.0013 18.5 1.3 1.7 1 1 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_Gly3P_dh_N PF01210.18 gi|345004044|ref|YP_004806897.1| - 0.00078 19.1 0.1 0.0012 18.6 0.0 1.3 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 2-Hacid_dh_C PF02826.14 gi|345004044|ref|YP_004806897.1| - 0.0035 16.5 0.1 0.006 15.7 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain F420_oxidored PF03807.12 gi|345004044|ref|YP_004806897.1| - 0.013 15.8 1.5 0.044 14.2 0.7 2.2 2 1 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent XdhC_C PF13478.1 gi|345004044|ref|YP_004806897.1| - 0.059 13.6 0.2 0.1 12.8 0.1 1.4 1 0 0 1 1 1 0 XdhC Rossmann domain NAD_binding_7 PF13241.1 gi|345004044|ref|YP_004806897.1| - 0.085 13.1 0.2 0.17 12.1 0.1 1.4 1 0 0 1 1 1 0 Putative NAD(P)-binding DAO PF01266.19 gi|345004044|ref|YP_004806897.1| - 0.087 11.7 2.9 0.11 11.3 2.0 1.4 1 1 0 1 1 1 0 FAD dependent oxidoreductase NAD_binding_3 PF03447.11 gi|345004044|ref|YP_004806897.1| - 0.1 13.0 1.4 0.31 11.4 1.0 1.8 1 1 0 1 1 1 0 Homoserine dehydrogenase, NAD binding domain Carboxyl_trans PF01039.17 gi|345004045|ref|YP_004806898.1| - 4.7e-127 424.3 0.1 6.5e-127 423.8 0.1 1.1 1 0 0 1 1 1 1 Carboxyl transferase domain DoxX PF07681.7 gi|345004046|ref|YP_004806899.1| - 0.00011 22.6 7.8 0.00011 22.6 5.4 1.8 1 1 1 2 2 2 1 DoxX MaoC_dehydratas PF01575.14 gi|345004047|ref|YP_004806900.1| - 1e-22 79.8 0.1 1.3e-22 79.4 0.0 1.1 1 0 0 1 1 1 1 MaoC like domain HpcH_HpaI PF03328.9 gi|345004048|ref|YP_004806901.1| - 5.7e-56 188.8 2.3 7.6e-56 188.4 1.6 1.2 1 0 0 1 1 1 1 HpcH/HpaI aldolase/citrate lyase family C-C_Bond_Lyase PF15617.1 gi|345004048|ref|YP_004806901.1| - 9.5e-12 44.3 0.1 1.4e-05 24.0 0.0 2.1 2 0 0 2 2 2 2 C-C_Bond_Lyase of the TIM-Barrel fold PK PF00224.16 gi|345004048|ref|YP_004806901.1| - 0.0001 21.0 0.2 0.00015 20.5 0.1 1.3 1 0 0 1 1 1 1 Pyruvate kinase, barrel domain PEP-utilizers_C PF02896.13 gi|345004048|ref|YP_004806901.1| - 0.021 13.7 0.1 0.038 12.8 0.1 1.4 1 1 0 1 1 1 0 PEP-utilising enzyme, TIM barrel domain ELFV_dehydrog PF00208.16 gi|345004049|ref|YP_004806902.1| - 3.6e-71 239.5 0.0 5.6e-71 238.9 0.0 1.3 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ELFV_dehydrog_N PF02812.13 gi|345004049|ref|YP_004806902.1| - 2.9e-48 162.7 0.0 7.9e-48 161.3 0.0 1.7 2 0 0 2 2 2 1 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain Oxidored_nitro PF00148.14 gi|345004049|ref|YP_004806902.1| - 0.092 11.3 0.0 0.13 10.9 0.0 1.2 1 0 0 1 1 1 0 Nitrogenase component 1 type Oxidoreductase DMRL_synthase PF00885.14 gi|345004050|ref|YP_004806903.1| - 1.8e-34 118.5 1.9 1.9e-34 118.4 1.3 1.0 1 0 0 1 1 1 1 6,7-dimethyl-8-ribityllumazine synthase FMN_red PF03358.10 gi|345004050|ref|YP_004806903.1| - 0.096 12.1 1.4 0.82 9.1 0.5 2.3 1 1 0 2 2 2 0 NADPH-dependent FMN reductase LytR_C PF13399.1 gi|345004050|ref|YP_004806903.1| - 1.6 9.1 5.5 11 6.4 1.8 2.2 1 1 1 2 2 2 0 LytR cell envelope-related transcriptional attenuator Aminotran_1_2 PF00155.16 gi|345004051|ref|YP_004806904.1| - 1.1e-60 205.5 0.0 1.2e-60 205.4 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.16 gi|345004051|ref|YP_004806904.1| - 0.00011 21.4 0.0 0.0003 20.0 0.0 1.7 2 0 0 2 2 2 1 Beta-eliminating lyase Cys_Met_Meta_PP PF01053.15 gi|345004051|ref|YP_004806904.1| - 0.0002 19.7 0.0 0.00038 18.8 0.0 1.3 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_5 PF00266.14 gi|345004051|ref|YP_004806904.1| - 0.0014 17.4 0.1 0.0031 16.2 0.0 1.5 2 0 0 2 2 2 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.12 gi|345004051|ref|YP_004806904.1| - 0.0044 16.1 0.1 0.0068 15.4 0.1 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family NHase_beta PF02211.10 gi|345004053|ref|YP_004806906.1| - 8.4e-63 212.0 0.2 9.4e-63 211.8 0.2 1.0 1 0 0 1 1 1 1 Nitrile hydratase beta subunit Aldo_ket_red PF00248.16 gi|345004054|ref|YP_004806907.1| - 1.5e-72 243.7 0.0 1.7e-72 243.6 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family CITED PF04487.7 gi|345004054|ref|YP_004806907.1| - 0.09 12.9 0.2 0.15 12.2 0.1 1.3 1 0 0 1 1 1 0 CITED DPRP PF04244.8 gi|345004056|ref|YP_004806909.1| - 0.00049 19.7 0.0 0.00061 19.3 0.0 1.1 1 0 0 1 1 1 1 Deoxyribodipyrimidine photo-lyase-related protein B12-binding_2 PF02607.12 gi|345004057|ref|YP_004806910.1| - 0.13 12.2 0.5 0.19 11.7 0.3 1.3 1 0 0 1 1 1 0 B12 binding domain Pyr_redox_2 PF07992.9 gi|345004058|ref|YP_004806911.1| - 3.7e-21 75.9 0.4 4.6e-21 75.6 0.2 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|345004058|ref|YP_004806911.1| - 6.1e-13 48.9 0.1 1.3e-11 44.7 0.0 2.3 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|345004058|ref|YP_004806911.1| - 7.7e-09 35.9 0.0 1.8e-06 28.1 0.0 2.4 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.1 gi|345004058|ref|YP_004806911.1| - 0.0011 18.9 0.0 0.0057 16.6 0.0 2.2 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.19 gi|345004058|ref|YP_004806911.1| - 0.0052 15.6 2.3 0.026 13.3 0.1 2.8 4 0 0 4 4 4 1 FAD binding domain DAO PF01266.19 gi|345004058|ref|YP_004806911.1| - 0.0056 15.6 1.0 0.65 8.8 0.1 2.4 1 1 1 2 2 2 2 FAD dependent oxidoreductase NAD_binding_7 PF13241.1 gi|345004058|ref|YP_004806911.1| - 0.015 15.5 0.0 0.055 13.7 0.0 1.9 2 0 0 2 2 2 0 Putative NAD(P)-binding HI0933_like PF03486.9 gi|345004058|ref|YP_004806911.1| - 0.082 11.3 0.5 0.35 9.2 0.0 2.3 4 0 0 4 4 4 0 HI0933-like protein DUF357 PF04010.8 gi|345004059|ref|YP_004806912.1| - 4.5e-27 93.5 0.0 5.3e-27 93.3 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF357) Cas_Cas1 PF01867.11 gi|345004059|ref|YP_004806912.1| - 0.052 12.6 0.0 0.067 12.2 0.0 1.1 1 0 0 1 1 1 0 CRISPR associated protein Cas1 tRNA-synt_1e PF01406.14 gi|345004060|ref|YP_004806913.1| - 2.3e-102 342.1 0.2 7.9e-102 340.4 0.1 1.7 1 1 0 1 1 1 1 tRNA synthetases class I (C) catalytic domain tRNA-synt_1g PF09334.6 gi|345004060|ref|YP_004806913.1| - 5e-10 38.5 0.2 0.00085 18.0 0.0 2.6 2 1 1 3 3 3 2 tRNA synthetases class I (M) DALR_2 PF09190.6 gi|345004060|ref|YP_004806913.1| - 2.2e-09 37.4 0.9 2.2e-09 37.4 0.6 2.1 2 0 0 2 2 2 1 DALR domain tRNA-synt_1f PF01921.13 gi|345004060|ref|YP_004806913.1| - 4.6e-09 35.4 0.0 5.9e-06 25.1 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (K) tRNA-synt_1 PF00133.17 gi|345004060|ref|YP_004806913.1| - 0.0015 16.6 0.0 0.063 11.2 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (I, L, M and V) tRNA-synt_1d PF00750.14 gi|345004060|ref|YP_004806913.1| - 0.068 11.9 0.2 4.7 5.9 0.0 2.4 1 1 0 2 2 2 0 tRNA synthetases class I (R) FixG_C PF11614.3 gi|345004062|ref|YP_004806915.1| - 0.0084 16.1 0.1 0.046 13.8 0.0 1.9 1 1 1 2 2 2 1 IG-like fold at C-terminal of FixG, putative oxidoreductase DUF3040 PF11239.3 gi|345004062|ref|YP_004806915.1| - 0.018 15.0 1.8 0.035 14.1 1.3 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3040) DUF1034 PF06280.7 gi|345004062|ref|YP_004806915.1| - 0.039 14.3 0.5 6.9 7.1 0.0 2.6 1 1 0 1 1 1 0 Fn3-like domain (DUF1034) DUF756 PF05506.7 gi|345004062|ref|YP_004806915.1| - 0.052 14.0 0.3 0.43 11.0 0.2 2.1 1 1 0 1 1 1 0 Domain of unknown function (DUF756) DUF2207 PF09972.4 gi|345004062|ref|YP_004806915.1| - 0.64 8.5 2.1 0.77 8.2 1.0 1.4 1 1 0 1 1 1 0 Predicted membrane protein (DUF2207) Herpes_US9 PF06072.6 gi|345004062|ref|YP_004806915.1| - 9.3 6.1 6.0 78 3.2 4.2 2.2 1 1 0 1 1 1 0 Alphaherpesvirus tegument protein US9 HpcH_HpaI PF03328.9 gi|345004063|ref|YP_004806916.1| - 4.3e-48 163.1 0.1 4.9e-48 162.9 0.1 1.0 1 0 0 1 1 1 1 HpcH/HpaI aldolase/citrate lyase family bPH_3 PF14470.1 gi|345004064|ref|YP_004806917.1| - 0.019 15.2 0.0 0.077 13.2 0.0 1.9 1 1 1 2 2 2 0 Bacterial PH domain NAD_binding_10 PF13460.1 gi|345004065|ref|YP_004806918.1| - 3.3e-21 76.1 0.6 4.2e-21 75.7 0.4 1.1 1 0 0 1 1 1 1 NADH(P)-binding Epimerase PF01370.16 gi|345004065|ref|YP_004806918.1| - 1.7e-14 53.8 0.0 5.1e-14 52.2 0.0 1.7 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family TrkA_N PF02254.13 gi|345004065|ref|YP_004806918.1| - 6.6e-10 39.0 0.1 1.2e-09 38.1 0.1 1.4 1 0 0 1 1 1 1 TrkA-N domain 3Beta_HSD PF01073.14 gi|345004065|ref|YP_004806918.1| - 3e-05 22.8 0.0 0.00017 20.4 0.0 1.9 2 0 0 2 2 2 1 3-beta hydroxysteroid dehydrogenase/isomerase family ApbA PF02558.11 gi|345004065|ref|YP_004806918.1| - 5.4e-05 22.6 0.0 8.7e-05 21.9 0.0 1.3 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA Semialdhyde_dh PF01118.19 gi|345004065|ref|YP_004806918.1| - 0.00018 21.8 0.1 0.00029 21.1 0.1 1.4 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain F420_oxidored PF03807.12 gi|345004065|ref|YP_004806918.1| - 0.00044 20.6 0.2 0.00094 19.5 0.1 1.6 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent UDPG_MGDP_dh_N PF03721.9 gi|345004065|ref|YP_004806918.1| - 0.00049 19.5 0.0 0.00074 18.9 0.0 1.3 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain GFO_IDH_MocA PF01408.17 gi|345004065|ref|YP_004806918.1| - 0.00082 19.8 0.1 0.0014 19.1 0.1 1.4 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold Rossmann-like PF10727.4 gi|345004065|ref|YP_004806918.1| - 0.0034 17.0 0.7 0.0068 16.1 0.5 1.6 1 1 0 1 1 1 1 Rossmann-like domain Saccharop_dh PF03435.13 gi|345004065|ref|YP_004806918.1| - 0.0039 16.2 0.4 0.0059 15.6 0.3 1.2 1 0 0 1 1 1 1 Saccharopine dehydrogenase Pyr_redox PF00070.22 gi|345004065|ref|YP_004806918.1| - 0.0066 16.8 0.2 0.012 16.0 0.2 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase VWA_2 PF13519.1 gi|345004065|ref|YP_004806918.1| - 0.0077 16.3 0.2 0.069 13.2 0.0 2.2 1 1 1 2 2 2 1 von Willebrand factor type A domain RmlD_sub_bind PF04321.12 gi|345004065|ref|YP_004806918.1| - 0.0089 14.9 0.3 0.046 12.6 0.2 1.9 1 1 0 1 1 1 1 RmlD substrate binding domain NAD_binding_2 PF03446.10 gi|345004065|ref|YP_004806918.1| - 0.0097 15.7 0.0 0.018 14.8 0.0 1.5 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase 3HCDH_N PF02737.13 gi|345004065|ref|YP_004806918.1| - 0.028 14.0 0.4 0.042 13.5 0.2 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain IlvN PF07991.7 gi|345004065|ref|YP_004806918.1| - 0.041 13.2 0.0 0.065 12.5 0.0 1.4 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, catalytic domain 2-Hacid_dh_C PF02826.14 gi|345004065|ref|YP_004806918.1| - 0.054 12.6 0.0 0.078 12.1 0.0 1.4 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_7 PF13241.1 gi|345004065|ref|YP_004806918.1| - 0.057 13.6 0.1 0.098 12.9 0.1 1.4 1 0 0 1 1 1 0 Putative NAD(P)-binding HATPase_c_4 PF13749.1 gi|345004065|ref|YP_004806918.1| - 0.17 11.6 0.0 3.5 7.4 0.0 2.4 3 0 0 3 3 2 0 ATP-dependent DNA helicase recG C-terminal NmrA PF05368.8 gi|345004065|ref|YP_004806918.1| - 0.2 10.8 0.3 0.3 10.2 0.2 1.2 1 0 0 1 1 1 0 NmrA-like family ThiF PF00899.16 gi|345004065|ref|YP_004806918.1| - 0.22 11.3 0.6 0.41 10.4 0.2 1.6 1 1 1 2 2 2 0 ThiF family T2SE PF00437.15 gi|345004072|ref|YP_004806925.1| - 1.1e-32 113.0 0.0 1.7e-32 112.4 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_29 PF13555.1 gi|345004072|ref|YP_004806925.1| - 0.0055 16.2 0.3 0.014 14.9 0.2 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_25 PF13481.1 gi|345004072|ref|YP_004806925.1| - 0.0068 15.8 0.1 0.022 14.1 0.1 1.9 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|345004072|ref|YP_004806925.1| - 0.0095 15.9 1.7 0.037 14.0 0.1 2.5 2 0 0 2 2 2 1 AAA ATPase domain FtsK_SpoIIIE PF01580.13 gi|345004072|ref|YP_004806925.1| - 0.037 13.5 0.0 0.11 12.0 0.0 1.7 1 0 0 1 1 1 0 FtsK/SpoIIIE family AAA_23 PF13476.1 gi|345004072|ref|YP_004806925.1| - 0.037 14.3 0.0 0.058 13.7 0.0 1.2 1 0 0 1 1 1 0 AAA domain ABC_tran PF00005.22 gi|345004072|ref|YP_004806925.1| - 0.045 14.0 0.0 0.091 13.0 0.0 1.5 1 0 0 1 1 1 0 ABC transporter Zeta_toxin PF06414.7 gi|345004072|ref|YP_004806925.1| - 0.091 11.8 0.1 0.21 10.6 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin ResIII PF04851.10 gi|345004072|ref|YP_004806925.1| - 0.14 12.0 0.0 0.22 11.3 0.0 1.2 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit NPV_P10 PF05531.7 gi|345004074|ref|YP_004806927.1| - 0.0012 19.0 1.5 0.13 12.4 0.1 2.4 1 1 1 2 2 2 2 Nucleopolyhedrovirus P10 protein XhlA PF10779.4 gi|345004074|ref|YP_004806927.1| - 0.0028 17.5 0.1 0.076 12.9 0.0 2.2 2 0 0 2 2 2 1 Haemolysin XhlA Dynamitin PF04912.9 gi|345004074|ref|YP_004806927.1| - 0.009 14.8 1.4 0.22 10.2 0.6 2.1 1 1 1 2 2 2 2 Dynamitin IncA PF04156.9 gi|345004074|ref|YP_004806927.1| - 0.0097 15.5 0.8 0.012 15.2 0.6 1.3 1 0 0 1 1 1 1 IncA protein DUF2984 PF11203.3 gi|345004074|ref|YP_004806927.1| - 0.01 15.9 6.3 0.074 13.1 4.4 2.2 1 1 0 1 1 1 0 Protein of unknown function (DUF2984) DUF3375 PF11855.3 gi|345004074|ref|YP_004806927.1| - 0.011 14.5 3.2 0.014 14.1 1.5 1.7 1 1 1 2 2 2 0 Protein of unknown function (DUF3375) HSBP1 PF06825.7 gi|345004074|ref|YP_004806927.1| - 0.015 14.8 0.1 0.44 10.1 0.0 2.4 2 0 0 2 2 2 0 Heat shock factor binding protein 1 THOC7 PF05615.8 gi|345004074|ref|YP_004806927.1| - 0.02 15.1 0.3 0.026 14.8 0.2 1.2 1 0 0 1 1 1 0 Tho complex subunit 7 Spectrin PF00435.16 gi|345004074|ref|YP_004806927.1| - 0.021 15.0 0.8 0.12 12.6 0.1 2.0 2 0 0 2 2 2 0 Spectrin repeat MutS_III PF05192.13 gi|345004074|ref|YP_004806927.1| - 0.033 13.9 0.8 0.096 12.4 0.6 1.5 1 1 1 2 2 2 0 MutS domain III Fmp27_WPPW PF10359.4 gi|345004074|ref|YP_004806927.1| - 0.039 12.3 0.6 0.051 11.9 0.4 1.3 1 1 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain Tropomyosin_1 PF12718.2 gi|345004074|ref|YP_004806927.1| - 0.062 13.1 4.2 0.049 13.4 1.9 1.6 1 1 0 1 1 1 0 Tropomyosin like Matrilin_ccoil PF10393.4 gi|345004074|ref|YP_004806927.1| - 0.064 12.6 0.7 11 5.4 0.0 3.2 3 0 0 3 3 3 0 Trimeric coiled-coil oligomerisation domain of matrilin Tropomyosin PF00261.15 gi|345004074|ref|YP_004806927.1| - 0.065 12.3 3.8 0.28 10.2 2.7 1.8 1 1 0 1 1 1 0 Tropomyosin DUF1664 PF07889.7 gi|345004074|ref|YP_004806927.1| - 0.075 12.8 0.3 0.11 12.2 0.2 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1664) Med9 PF07544.8 gi|345004074|ref|YP_004806927.1| - 0.077 12.7 0.4 0.24 11.1 0.2 1.9 1 1 0 1 1 1 0 RNA polymerase II transcription mediator complex subunit 9 V_ATPase_I PF01496.14 gi|345004074|ref|YP_004806927.1| - 0.094 10.5 0.1 0.098 10.4 0.1 1.0 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family LPP PF04728.8 gi|345004074|ref|YP_004806927.1| - 0.1 12.3 1.9 2.9 7.7 0.6 2.9 1 1 1 2 2 2 0 Lipoprotein leucine-zipper DUF3584 PF12128.3 gi|345004074|ref|YP_004806927.1| - 0.12 9.6 2.8 0.13 9.5 1.9 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) Syntaxin-6_N PF09177.6 gi|345004074|ref|YP_004806927.1| - 0.14 12.5 3.2 0.34 11.3 1.5 2.1 1 1 1 2 2 2 0 Syntaxin 6, N-terminal HalX PF08663.5 gi|345004074|ref|YP_004806927.1| - 0.14 12.1 7.6 0.35 10.8 2.8 3.0 1 1 2 3 3 3 0 HalX domain Prefoldin_2 PF01920.15 gi|345004074|ref|YP_004806927.1| - 0.17 11.6 2.4 4.2 7.1 0.3 2.8 1 1 1 2 2 2 0 Prefoldin subunit Allexi_40kDa PF05549.6 gi|345004074|ref|YP_004806927.1| - 0.18 11.0 0.7 0.9 8.7 0.1 1.8 1 1 1 2 2 2 0 Allexivirus 40kDa protein Phasin PF05597.6 gi|345004074|ref|YP_004806927.1| - 0.28 10.9 3.6 1.8 8.3 0.5 2.6 1 1 1 2 2 2 0 Poly(hydroxyalcanoate) granule associated protein (phasin) MRF_C1 PF13887.1 gi|345004074|ref|YP_004806927.1| - 0.35 9.9 3.7 1.9 7.5 0.1 3.1 3 0 0 3 3 3 0 Myelin gene regulatory factor -C-terminal domain 1 DUF4612 PF15389.1 gi|345004074|ref|YP_004806927.1| - 0.69 10.5 3.8 9.8 6.8 0.5 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4612) BMFP PF04380.8 gi|345004074|ref|YP_004806927.1| - 1.4 9.0 5.1 3.5 7.8 0.1 3.0 3 0 0 3 3 3 0 Membrane fusogenic activity DUF4164 PF13747.1 gi|345004074|ref|YP_004806927.1| - 1.5 9.0 9.2 1.8 8.7 2.1 2.6 1 1 2 3 3 3 0 Domain of unknown function (DUF4164) HrpF PF06266.7 gi|345004074|ref|YP_004806927.1| - 2.2 8.4 5.7 0.85 9.7 1.3 2.1 1 1 2 3 3 3 0 HrpF protein Sugarporin_N PF11471.3 gi|345004074|ref|YP_004806927.1| - 3.5 7.3 11.4 7.4 6.2 0.9 3.4 3 1 1 4 4 3 0 Maltoporin periplasmic N-terminal extension SlyX PF04102.7 gi|345004074|ref|YP_004806927.1| - 4.1 7.8 5.3 19 5.7 1.4 3.0 2 1 0 2 2 2 0 SlyX Tubulin PF00091.20 gi|345004075|ref|YP_004806928.1| - 5.4e-24 85.2 0.3 2.1e-23 83.2 0.1 2.0 2 1 0 2 2 2 1 Tubulin/FtsZ family, GTPase domain Tubulin_2 PF13809.1 gi|345004075|ref|YP_004806928.1| - 0.0037 16.2 0.3 0.0073 15.2 0.2 1.4 1 1 0 1 1 1 1 Tubulin like CinA PF02464.12 gi|345004076|ref|YP_004806929.1| - 4.9e-54 181.9 0.4 5.4e-54 181.8 0.3 1.0 1 0 0 1 1 1 1 Competence-damaged protein DUF457 PF04307.9 gi|345004077|ref|YP_004806930.1| - 1.7e-17 63.1 6.7 2.3e-17 62.7 4.7 1.1 1 0 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) Zn_dep_PLPC PF00882.13 gi|345004077|ref|YP_004806930.1| - 0.003 17.2 0.2 0.0052 16.4 0.1 1.4 1 0 0 1 1 1 1 Zinc dependent phospholipase C DUF4184 PF13803.1 gi|345004077|ref|YP_004806930.1| - 0.042 13.1 1.5 0.043 13.1 0.5 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4184) PHP_C PF13263.1 gi|345004078|ref|YP_004806931.1| - 1.9e-15 56.0 0.0 3.3e-15 55.3 0.0 1.4 1 0 0 1 1 1 1 PHP-associated zf-C2H2 PF00096.21 gi|345004079|ref|YP_004806932.1| - 0.0071 16.6 0.2 0.57 10.6 0.0 2.3 2 0 0 2 2 2 1 Zinc finger, C2H2 type FYVE PF01363.16 gi|345004079|ref|YP_004806932.1| - 0.01 15.7 0.1 0.013 15.3 0.1 1.3 1 0 0 1 1 1 0 FYVE zinc finger DUF2789 PF10982.3 gi|345004079|ref|YP_004806932.1| - 0.088 12.8 0.1 0.12 12.4 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2789) ATP_bind_4 PF01902.12 gi|345004080|ref|YP_004806933.1| - 6.4e-59 198.9 0.0 2e-58 197.3 0.0 1.6 1 1 0 1 1 1 1 ATP-binding region Asn_synthase PF00733.16 gi|345004080|ref|YP_004806933.1| - 0.033 13.6 0.0 0.057 12.8 0.0 1.4 1 0 0 1 1 1 0 Asparagine synthase NUDIX PF00293.23 gi|345004080|ref|YP_004806933.1| - 0.062 12.9 0.6 0.1 12.2 0.4 1.4 1 0 0 1 1 1 0 NUDIX domain Methyltransf_24 PF13578.1 gi|345004080|ref|YP_004806933.1| - 0.078 13.8 0.1 0.55 11.0 0.0 2.2 1 1 0 1 1 1 0 Methyltransferase domain QueC PF06508.8 gi|345004080|ref|YP_004806933.1| - 0.13 11.4 0.0 0.31 10.2 0.0 1.6 2 0 0 2 2 2 0 Queuosine biosynthesis protein QueC PAPS_reduct PF01507.14 gi|345004081|ref|YP_004806934.1| - 6e-19 68.5 0.0 3.2e-15 56.4 0.0 3.1 2 1 0 2 2 2 2 Phosphoadenosine phosphosulfate reductase family ATP_bind_4 PF01902.12 gi|345004081|ref|YP_004806934.1| - 3.6e-05 23.2 0.1 0.00099 18.5 0.0 2.4 3 0 0 3 3 3 1 ATP-binding region HTH_10 PF04967.7 gi|345004082|ref|YP_004806935.1| - 5.2e-19 67.5 0.0 7.9e-19 66.9 0.0 1.3 1 0 0 1 1 1 1 HTH DNA binding domain MarR_2 PF12802.2 gi|345004082|ref|YP_004806935.1| - 0.017 14.7 0.0 0.62 9.7 0.0 2.5 2 0 0 2 2 2 0 MarR family PHP_C PF13263.1 gi|345004082|ref|YP_004806935.1| - 0.76 9.3 2.9 3.5 7.1 0.0 2.8 4 0 0 4 4 4 0 PHP-associated ABC_tran PF00005.22 gi|345004083|ref|YP_004806936.1| - 1.3e-35 122.6 0.0 2.1e-35 122.0 0.0 1.3 1 0 0 1 1 1 1 ABC transporter TOBE_2 PF08402.5 gi|345004083|ref|YP_004806936.1| - 4.9e-12 45.6 3.2 6.6e-12 45.2 0.7 2.4 1 1 1 2 2 2 1 TOBE domain AAA_21 PF13304.1 gi|345004083|ref|YP_004806936.1| - 1.8e-10 41.2 0.0 1.9e-05 24.8 0.0 2.1 1 1 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|345004083|ref|YP_004806936.1| - 9e-06 25.0 0.2 0.028 13.6 0.0 2.3 2 1 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|345004083|ref|YP_004806936.1| - 0.0015 17.9 0.0 0.0036 16.8 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|345004083|ref|YP_004806936.1| - 0.0021 18.0 0.6 0.0054 16.7 0.4 1.8 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|345004083|ref|YP_004806936.1| - 0.0035 17.4 0.4 0.02 15.0 0.2 2.1 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|345004083|ref|YP_004806936.1| - 0.0042 16.9 0.0 0.011 15.6 0.0 1.7 1 1 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|345004083|ref|YP_004806936.1| - 0.0079 15.3 0.0 0.015 14.5 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_17 PF13207.1 gi|345004083|ref|YP_004806936.1| - 0.018 15.8 0.2 0.04 14.7 0.2 2.0 1 1 0 1 1 1 0 AAA domain AAA_25 PF13481.1 gi|345004083|ref|YP_004806936.1| - 0.027 13.8 0.0 0.62 9.4 0.0 2.3 2 0 0 2 2 2 0 AAA domain AAA_10 PF12846.2 gi|345004083|ref|YP_004806936.1| - 0.03 13.7 0.1 0.076 12.4 0.1 1.6 1 0 0 1 1 1 0 AAA-like domain AAA_13 PF13166.1 gi|345004083|ref|YP_004806936.1| - 0.036 12.5 0.0 1.5 7.2 0.0 2.1 1 1 1 2 2 2 0 AAA domain MobB PF03205.9 gi|345004083|ref|YP_004806936.1| - 0.043 13.5 0.1 0.32 10.7 0.0 2.3 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B SbcCD_C PF13558.1 gi|345004083|ref|YP_004806936.1| - 0.053 13.4 0.1 0.36 10.7 0.1 2.3 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_19 PF13245.1 gi|345004083|ref|YP_004806936.1| - 0.11 12.2 0.0 0.29 10.9 0.0 1.7 1 0 0 1 1 1 0 Part of AAA domain AAA_23 PF13476.1 gi|345004083|ref|YP_004806936.1| - 0.12 12.7 0.0 0.22 11.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain DUF2733 PF10813.3 gi|345004083|ref|YP_004806936.1| - 0.83 9.2 2.6 28 4.3 0.1 2.8 3 0 0 3 3 3 0 Protein of unknown function (DUF2733) BPD_transp_1 PF00528.17 gi|345004084|ref|YP_004806937.1| - 3.5e-14 52.7 19.4 3.5e-14 52.7 13.4 2.4 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component DUF3789 PF12664.2 gi|345004084|ref|YP_004806937.1| - 4.1 6.7 10.6 0.63 9.4 3.9 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3789) BPD_transp_1 PF00528.17 gi|345004085|ref|YP_004806938.1| - 2.9e-19 69.3 10.8 2.9e-19 69.3 7.5 2.1 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component DUF2273 PF10031.4 gi|345004085|ref|YP_004806938.1| - 0.017 14.7 0.6 0.017 14.7 0.4 3.1 4 0 0 4 4 4 0 Small integral membrane protein (DUF2273) Glutaredoxin PF00462.19 gi|345004087|ref|YP_004806940.1| - 3.7e-17 62.0 0.0 6.6e-17 61.2 0.0 1.4 1 0 0 1 1 1 1 Glutaredoxin MarR PF01047.17 gi|345004088|ref|YP_004806941.1| - 0.00024 20.7 0.0 0.00036 20.1 0.0 1.3 1 0 0 1 1 1 1 MarR family B-block_TFIIIC PF04182.7 gi|345004088|ref|YP_004806941.1| - 0.00042 20.1 0.0 0.00059 19.6 0.0 1.2 1 0 0 1 1 1 1 B-block binding subunit of TFIIIC MarR_2 PF12802.2 gi|345004088|ref|YP_004806941.1| - 0.0084 15.7 0.0 0.013 15.2 0.0 1.2 1 0 0 1 1 1 1 MarR family TrmB PF01978.14 gi|345004088|ref|YP_004806941.1| - 0.06 13.0 0.1 0.083 12.6 0.0 1.2 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB UPF0118 PF01594.11 gi|345004089|ref|YP_004806942.1| - 1.7e-11 43.7 43.2 7.5e-11 41.5 30.0 1.9 1 1 0 1 1 1 1 Domain of unknown function DUF20 DUF457 PF04307.9 gi|345004090|ref|YP_004806943.1| - 7.4e-17 61.1 16.9 1e-16 60.6 11.7 1.1 1 0 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) Acetyltransf_1 PF00583.19 gi|345004090|ref|YP_004806943.1| - 1.1e-10 41.3 0.1 2.6e-10 40.1 0.1 1.6 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|345004090|ref|YP_004806943.1| - 1.4e-06 28.3 0.0 4.9e-06 26.6 0.0 1.8 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|345004090|ref|YP_004806943.1| - 0.00018 21.3 0.5 0.0006 19.6 0.0 2.0 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|345004090|ref|YP_004806943.1| - 0.00018 21.5 0.2 0.00062 19.8 0.0 1.9 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|345004090|ref|YP_004806943.1| - 0.00083 19.0 0.0 0.0023 17.6 0.0 1.7 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_CG PF14542.1 gi|345004090|ref|YP_004806943.1| - 0.0059 16.4 0.0 0.019 14.8 0.0 1.9 1 1 1 2 2 2 1 GCN5-related N-acetyl-transferase Mec-17 PF05301.6 gi|345004090|ref|YP_004806943.1| - 0.021 14.7 0.0 0.039 13.8 0.0 1.4 1 0 0 1 1 1 0 Touch receptor neuron protein Mec-17 Acetyltransf_3 PF13302.1 gi|345004090|ref|YP_004806943.1| - 0.14 12.3 0.0 0.29 11.3 0.0 1.5 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain Proteasome PF00227.21 gi|345004091|ref|YP_004806944.1| - 7.9e-57 191.6 0.0 1e-56 191.2 0.0 1.1 1 0 0 1 1 1 1 Proteasome subunit Proteasome_A_N PF10584.4 gi|345004091|ref|YP_004806944.1| - 2.8e-14 52.1 0.1 4.8e-14 51.3 0.1 1.4 1 0 0 1 1 1 1 Proteasome subunit A N-terminal signature RNase_P_Rpp14 PF01900.14 gi|345004092|ref|YP_004806945.1| - 9.3e-20 70.5 0.0 1.1e-19 70.2 0.0 1.1 1 0 0 1 1 1 1 Rpp14/Pop5 family Methyltransf_31 PF13847.1 gi|345004093|ref|YP_004806946.1| - 2.3e-18 66.2 0.0 3.2e-18 65.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|345004093|ref|YP_004806946.1| - 4.8e-17 62.5 0.2 8.4e-17 61.7 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|345004093|ref|YP_004806946.1| - 6.8e-14 52.1 0.0 1.1e-13 51.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|345004093|ref|YP_004806946.1| - 2.5e-12 47.1 0.0 4.3e-12 46.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|345004093|ref|YP_004806946.1| - 4.4e-11 43.0 0.0 8.5e-11 42.1 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|345004093|ref|YP_004806946.1| - 1.2e-09 37.6 0.0 1.8e-09 37.0 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_26 PF13659.1 gi|345004093|ref|YP_004806946.1| - 9.2e-09 35.3 0.2 1.2e-08 34.9 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|345004093|ref|YP_004806946.1| - 1.7e-08 34.3 0.0 2.2e-08 33.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|345004093|ref|YP_004806946.1| - 2.2e-08 33.6 0.0 3e-08 33.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain PrmA PF06325.8 gi|345004093|ref|YP_004806946.1| - 1.2e-05 24.5 0.1 1.7e-05 24.1 0.1 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_32 PF13679.1 gi|345004093|ref|YP_004806946.1| - 0.00015 21.4 0.0 0.00021 21.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.13 gi|345004093|ref|YP_004806946.1| - 0.00076 19.0 0.1 0.0011 18.5 0.1 1.2 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 CMAS PF02353.15 gi|345004093|ref|YP_004806946.1| - 0.00082 18.5 0.0 0.0011 18.0 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase PCMT PF01135.14 gi|345004093|ref|YP_004806946.1| - 0.0096 15.4 0.0 0.014 14.9 0.0 1.3 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_2 PF00891.13 gi|345004093|ref|YP_004806946.1| - 0.016 14.3 0.0 0.022 13.9 0.0 1.2 1 0 0 1 1 1 0 O-methyltransferase DREV PF05219.7 gi|345004093|ref|YP_004806946.1| - 0.031 13.1 0.0 0.038 12.8 0.0 1.3 1 0 0 1 1 1 0 DREV methyltransferase Methyltransf_4 PF02390.12 gi|345004093|ref|YP_004806946.1| - 0.048 12.6 0.0 0.069 12.1 0.0 1.2 1 0 0 1 1 1 0 Putative methyltransferase PepSY_2 PF13670.1 gi|345004093|ref|YP_004806946.1| - 0.056 13.3 0.3 1.4 8.9 0.1 2.4 2 0 0 2 2 2 0 Peptidase propeptide and YPEB domain RrnaAD PF00398.15 gi|345004093|ref|YP_004806946.1| - 0.08 11.9 0.0 0.12 11.3 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase Methyltransf_16 PF10294.4 gi|345004093|ref|YP_004806946.1| - 0.09 12.2 0.0 0.14 11.5 0.0 1.3 1 0 0 1 1 1 0 Putative methyltransferase tRNA_U5-meth_tr PF05958.6 gi|345004093|ref|YP_004806946.1| - 0.12 10.9 0.0 0.18 10.4 0.0 1.1 1 0 0 1 1 1 0 tRNA (Uracil-5-)-methyltransferase FtsJ PF01728.14 gi|345004093|ref|YP_004806946.1| - 0.14 12.1 0.0 0.2 11.6 0.0 1.4 1 1 0 1 1 1 0 FtsJ-like methyltransferase RNase_P_p30 PF01876.11 gi|345004094|ref|YP_004806947.1| - 1.7e-28 98.7 0.0 2.2e-28 98.4 0.0 1.1 1 0 0 1 1 1 1 RNase P subunit p30 PHP PF02811.14 gi|345004094|ref|YP_004806947.1| - 0.044 13.5 0.0 0.056 13.2 0.0 1.2 1 0 0 1 1 1 0 PHP domain Pterin_bind PF00809.17 gi|345004095|ref|YP_004806948.1| - 2.7e-67 226.2 0.1 4.6e-67 225.4 0.0 1.4 1 0 0 1 1 1 1 Pterin binding enzyme Mur_ligase_M PF08245.7 gi|345004095|ref|YP_004806948.1| - 7.1e-12 45.7 0.0 2e-11 44.3 0.0 1.8 1 1 0 1 1 1 1 Mur ligase middle domain Mur_ligase_C PF02875.16 gi|345004095|ref|YP_004806948.1| - 1.4e-07 31.4 0.0 5e-07 29.6 0.0 2.0 1 0 0 1 1 1 1 Mur ligase family, glutamate ligase domain AICARFT_IMPCHas PF01808.13 gi|345004096|ref|YP_004806949.1| - 2.7e-81 273.0 0.2 3.9e-81 272.5 0.1 1.1 1 0 0 1 1 1 1 AICARFT/IMPCHase bienzyme Formyl_trans_N PF00551.14 gi|345004096|ref|YP_004806949.1| - 8.4e-39 132.9 0.2 2.2e-38 131.6 0.0 1.7 2 0 0 2 2 2 1 Formyl transferase CoA_binding_2 PF13380.1 gi|345004096|ref|YP_004806949.1| - 0.0041 17.2 1.0 1.8 8.7 0.0 3.5 3 0 0 3 3 3 1 CoA binding domain DRTGG PF07085.7 gi|345004096|ref|YP_004806949.1| - 0.015 14.8 0.1 0.21 11.1 0.0 2.8 2 0 0 2 2 2 0 DRTGG domain Lyase_1 PF00206.15 gi|345004097|ref|YP_004806950.1| - 1.6e-49 168.7 0.0 2e-49 168.4 0.0 1.1 1 0 0 1 1 1 1 Lyase ASL_C PF08328.6 gi|345004097|ref|YP_004806950.1| - 2.3e-40 137.0 0.0 3.9e-40 136.2 0.0 1.4 1 0 0 1 1 1 1 Adenylosuccinate lyase C-terminal ADSL_C PF10397.4 gi|345004097|ref|YP_004806950.1| - 0.12 12.3 1.3 0.36 10.8 0.0 2.5 3 0 0 3 3 3 0 Adenylosuccinate lyase C-terminus Usp PF00582.21 gi|345004098|ref|YP_004806951.1| - 1.7e-16 60.6 3.1 1.3e-14 54.5 0.1 2.8 2 1 0 2 2 2 2 Universal stress protein family Peptidase_M20 PF01546.23 gi|345004099|ref|YP_004806952.1| - 5.7e-29 100.9 1.5 7e-29 100.6 1.1 1.1 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.9 gi|345004099|ref|YP_004806952.1| - 8.2e-21 73.8 0.1 1.5e-20 72.9 0.0 1.5 1 0 0 1 1 1 1 Peptidase dimerisation domain DAP_epimerase PF01678.14 gi|345004100|ref|YP_004806953.1| - 1.8e-38 131.1 7.5 4.9e-20 71.6 0.3 3.5 2 2 0 2 2 2 2 Diaminopimelate epimerase Orn_Arg_deC_N PF02784.11 gi|345004101|ref|YP_004806954.1| - 2.5e-36 125.1 0.0 3.1e-36 124.8 0.0 1.1 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Orn_DAP_Arg_deC PF00278.17 gi|345004101|ref|YP_004806954.1| - 1.2e-18 66.8 0.0 2e-18 66.1 0.0 1.3 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase, C-terminal sheet domain THDPS_N_2 PF14805.1 gi|345004102|ref|YP_004806955.1| - 1.3e-12 47.3 0.4 1.9e-12 46.8 0.3 1.3 1 0 0 1 1 1 1 Tetrahydrodipicolinate N-succinyltransferase N-terminal Hexapep PF00132.19 gi|345004102|ref|YP_004806955.1| - 4e-12 45.0 3.0 0.00024 20.4 0.4 3.3 2 1 0 3 3 3 2 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|345004102|ref|YP_004806955.1| - 8.2e-05 22.0 9.1 0.0052 16.3 0.2 3.4 3 1 1 4 4 4 2 Hexapeptide repeat of succinyl-transferase HD_3 PF13023.1 gi|345004102|ref|YP_004806955.1| - 0.094 12.4 0.0 0.13 12.0 0.0 1.2 1 0 0 1 1 1 0 HD domain DapB_C PF05173.9 gi|345004103|ref|YP_004806956.1| - 5.7e-39 132.9 0.1 8.1e-39 132.4 0.1 1.2 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, C-terminus DapB_N PF01113.15 gi|345004103|ref|YP_004806956.1| - 1.1e-22 80.3 0.1 2.1e-22 79.3 0.1 1.5 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus NAD_binding_3 PF03447.11 gi|345004103|ref|YP_004806956.1| - 9.6e-05 22.7 0.2 0.00018 21.9 0.2 1.4 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain Semialdhyde_dh PF01118.19 gi|345004103|ref|YP_004806956.1| - 0.00021 21.5 0.1 0.00037 20.7 0.0 1.4 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain ActA PF05058.7 gi|345004103|ref|YP_004806956.1| - 0.046 11.7 0.1 0.056 11.4 0.1 1.1 1 0 0 1 1 1 0 ActA Protein CoA_binding_2 PF13380.1 gi|345004103|ref|YP_004806956.1| - 0.055 13.6 0.2 0.087 12.9 0.1 1.5 1 1 0 1 1 1 0 CoA binding domain DUF1860 PF08949.5 gi|345004103|ref|YP_004806956.1| - 0.086 12.4 0.2 0.18 11.3 0.1 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF1860) Epimerase PF01370.16 gi|345004103|ref|YP_004806956.1| - 0.11 11.9 0.5 0.81 9.0 0.1 2.0 2 0 0 2 2 2 0 NAD dependent epimerase/dehydratase family DHDPS PF00701.17 gi|345004104|ref|YP_004806957.1| - 3.4e-86 288.4 0.0 3.9e-86 288.2 0.0 1.0 1 0 0 1 1 1 1 Dihydrodipicolinate synthetase family ThiG PF05690.9 gi|345004104|ref|YP_004806957.1| - 6e-05 22.2 0.2 0.0001 21.5 0.1 1.3 1 0 0 1 1 1 1 Thiazole biosynthesis protein ThiG PEP_mutase PF13714.1 gi|345004104|ref|YP_004806957.1| - 0.052 12.7 2.4 0.12 11.5 1.7 1.7 1 1 0 1 1 1 0 Phosphoenolpyruvate phosphomutase NMO PF03060.10 gi|345004104|ref|YP_004806957.1| - 1.4 7.9 7.1 0.98 8.4 2.6 2.1 2 1 0 2 2 2 0 Nitronate monooxygenase NYN PF01936.13 gi|345004105|ref|YP_004806958.1| - 2.1e-40 138.3 0.1 2.5e-40 138.1 0.1 1.0 1 0 0 1 1 1 1 NYN domain Peripla_BP_3 PF13377.1 gi|345004105|ref|YP_004806958.1| - 0.035 14.1 0.0 0.051 13.5 0.0 1.2 1 0 0 1 1 1 0 Periplasmic binding protein-like domain NAD_binding_7 PF13241.1 gi|345004105|ref|YP_004806958.1| - 0.14 12.4 0.0 12 6.1 0.0 2.2 2 0 0 2 2 2 0 Putative NAD(P)-binding TGT_C2 PF14810.1 gi|345004106|ref|YP_004806959.1| - 4.5e-23 80.8 0.0 9.9e-23 79.7 0.0 1.6 2 0 0 2 2 2 1 Patch-forming domain C2 of tRNA-guanine transglycosylase PUA PF01472.15 gi|345004106|ref|YP_004806959.1| - 2.9e-15 55.7 0.2 4e-15 55.3 0.1 1.2 1 0 0 1 1 1 1 PUA domain DUF1119 PF06550.6 gi|345004107|ref|YP_004806960.1| - 1.2e-82 277.2 11.1 1.6e-82 276.8 7.7 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1119) Presenilin PF01080.12 gi|345004107|ref|YP_004806960.1| - 1e-05 24.5 0.2 0.00091 18.1 0.1 2.4 2 0 0 2 2 2 2 Presenilin Peptidase_A22B PF04258.8 gi|345004107|ref|YP_004806960.1| - 5.7e-05 22.7 9.9 0.0061 16.0 0.7 2.8 2 1 0 2 2 2 2 Signal peptide peptidase Epiglycanin_C PF14654.1 gi|345004107|ref|YP_004806960.1| - 0.2 11.7 1.6 0.29 11.1 0.1 2.0 2 0 0 2 2 2 0 Mucin, catalytic, TM and cytoplasmic tail region Arteri_Gl PF00951.13 gi|345004107|ref|YP_004806960.1| - 4.7 6.7 7.8 9.8 5.7 0.1 2.5 2 0 0 2 2 2 0 Arterivirus GL envelope glycoprotein Gar1 PF04410.9 gi|345004108|ref|YP_004806961.1| - 2.1e-09 37.0 0.0 2.2e-09 36.9 0.0 1.0 1 0 0 1 1 1 1 Gar1/Naf1 RNA binding region SRP19 PF01922.12 gi|345004109|ref|YP_004806962.1| - 1.4e-27 96.0 0.0 1.5e-27 95.9 0.0 1.0 1 0 0 1 1 1 1 SRP19 protein Peripla_BP_2 PF01497.13 gi|345004110|ref|YP_004806963.1| - 1.1e-22 80.3 0.7 1.7e-22 79.7 0.5 1.3 1 0 0 1 1 1 1 Periplasmic binding protein FecCD PF01032.13 gi|345004111|ref|YP_004806964.1| - 3.1e-89 298.8 28.9 3.9e-89 298.5 20.1 1.0 1 0 0 1 1 1 1 FecCD transport family ABC-3 PF00950.12 gi|345004111|ref|YP_004806964.1| - 1.8e-05 24.1 14.0 3.6e-05 23.1 9.7 1.5 1 1 0 1 1 1 1 ABC 3 transport family ABC_tran PF00005.22 gi|345004112|ref|YP_004806965.1| - 4.8e-33 114.3 0.0 7.1e-33 113.8 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|345004112|ref|YP_004806965.1| - 1.7e-09 38.0 0.0 6.7e-05 22.9 0.0 2.1 2 0 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|345004112|ref|YP_004806965.1| - 1.4e-06 27.7 0.0 4.5e-06 26.0 0.0 1.7 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.1 gi|345004112|ref|YP_004806965.1| - 6.6e-06 26.5 0.0 9.5e-06 26.0 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|345004112|ref|YP_004806965.1| - 0.00028 20.3 0.2 0.00056 19.3 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_28 PF13521.1 gi|345004112|ref|YP_004806965.1| - 0.00093 19.1 0.6 0.0021 18.0 0.1 1.9 2 0 0 2 2 1 1 AAA domain Zeta_toxin PF06414.7 gi|345004112|ref|YP_004806965.1| - 0.0011 18.1 0.0 0.002 17.2 0.0 1.3 1 0 0 1 1 1 1 Zeta toxin AAA_16 PF13191.1 gi|345004112|ref|YP_004806965.1| - 0.0028 17.6 1.2 0.0042 17.0 0.1 1.9 2 1 0 2 2 2 1 AAA ATPase domain AAA_30 PF13604.1 gi|345004112|ref|YP_004806965.1| - 0.0031 17.1 0.2 0.0071 15.9 0.1 1.6 1 0 0 1 1 1 1 AAA domain NACHT PF05729.7 gi|345004112|ref|YP_004806965.1| - 0.011 15.4 0.2 0.19 11.3 0.0 2.4 3 0 0 3 3 3 0 NACHT domain DUF258 PF03193.11 gi|345004112|ref|YP_004806965.1| - 0.014 14.5 0.3 0.03 13.4 0.1 1.6 2 0 0 2 2 2 0 Protein of unknown function, DUF258 UPF0079 PF02367.12 gi|345004112|ref|YP_004806965.1| - 0.015 14.9 0.3 0.028 14.0 0.2 1.3 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 cobW PF02492.14 gi|345004112|ref|YP_004806965.1| - 0.03 13.7 0.2 0.14 11.6 0.0 2.1 3 0 0 3 3 3 0 CobW/HypB/UreG, nucleotide-binding domain AAA PF00004.24 gi|345004112|ref|YP_004806965.1| - 0.034 14.3 0.0 0.073 13.2 0.0 1.5 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_33 PF13671.1 gi|345004112|ref|YP_004806965.1| - 0.039 13.8 3.7 0.045 13.6 0.2 2.5 2 1 0 2 2 2 0 AAA domain AAA_15 PF13175.1 gi|345004112|ref|YP_004806965.1| - 0.058 12.4 0.0 0.2 10.6 0.0 1.7 2 0 0 2 2 2 0 AAA ATPase domain AAA_17 PF13207.1 gi|345004112|ref|YP_004806965.1| - 0.072 13.9 0.3 0.25 12.1 0.1 2.0 2 0 0 2 2 1 0 AAA domain MMR_HSR1 PF01926.18 gi|345004112|ref|YP_004806965.1| - 0.08 12.8 0.0 0.2 11.5 0.0 1.9 1 1 0 1 1 1 0 50S ribosome-binding GTPase MobB PF03205.9 gi|345004112|ref|YP_004806965.1| - 0.12 12.0 0.1 0.36 10.5 0.0 1.8 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B ABC_ATPase PF09818.4 gi|345004112|ref|YP_004806965.1| - 0.13 10.8 0.4 0.71 8.3 0.1 2.0 2 0 0 2 2 2 0 Predicted ATPase of the ABC class AAA_22 PF13401.1 gi|345004112|ref|YP_004806965.1| - 0.13 12.4 0.1 0.46 10.6 0.0 1.8 2 0 0 2 2 2 0 AAA domain Met_10 PF02475.11 gi|345004113|ref|YP_004806966.1| - 8.8e-53 178.8 0.0 1.2e-52 178.4 0.0 1.2 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_15 PF09445.5 gi|345004113|ref|YP_004806966.1| - 3.6e-10 39.6 0.0 5.3e-10 39.0 0.0 1.2 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_18 PF12847.2 gi|345004113|ref|YP_004806966.1| - 9.2e-10 39.0 1.8 1.2e-09 38.7 0.2 1.9 2 1 0 2 2 2 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|345004113|ref|YP_004806966.1| - 2.9e-09 36.9 3.9 4.2e-09 36.4 1.3 2.1 2 0 0 2 2 2 1 Methyltransferase domain MTS PF05175.9 gi|345004113|ref|YP_004806966.1| - 1.2e-08 34.5 0.1 3.3e-08 33.1 0.0 1.6 1 1 1 2 2 2 1 Methyltransferase small domain Methyltransf_31 PF13847.1 gi|345004113|ref|YP_004806966.1| - 9e-08 31.8 0.0 1.3e-07 31.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.8 gi|345004113|ref|YP_004806966.1| - 5.6e-06 25.6 0.1 8.8e-06 25.0 0.1 1.3 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) UPF0020 PF01170.13 gi|345004113|ref|YP_004806966.1| - 4.1e-05 23.2 0.0 6.8e-05 22.5 0.0 1.3 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 TRM PF02005.11 gi|345004113|ref|YP_004806966.1| - 0.00041 19.4 0.1 0.00057 18.9 0.1 1.1 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase TehB PF03848.9 gi|345004113|ref|YP_004806966.1| - 0.00064 18.9 0.0 0.001 18.2 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB Methyltransf_11 PF08241.7 gi|345004113|ref|YP_004806966.1| - 0.0011 19.4 0.0 0.0032 17.9 0.0 2.0 1 1 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.10 gi|345004113|ref|YP_004806966.1| - 0.0022 17.4 0.0 0.0041 16.5 0.0 1.4 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_23 PF13489.1 gi|345004113|ref|YP_004806966.1| - 0.0089 15.7 0.0 0.014 15.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_24 PF13578.1 gi|345004113|ref|YP_004806966.1| - 0.032 15.0 3.0 0.074 13.8 1.0 2.6 1 1 2 3 3 3 0 Methyltransferase domain Methyltransf_12 PF08242.7 gi|345004113|ref|YP_004806966.1| - 0.04 14.3 0.0 0.086 13.3 0.0 1.7 1 0 0 1 1 1 0 Methyltransferase domain DUF746 PF05344.6 gi|345004113|ref|YP_004806966.1| - 0.081 12.4 0.0 0.16 11.4 0.0 1.5 1 0 0 1 1 1 0 Domain of Unknown Function (DUF746) DNA_methylase PF00145.12 gi|345004113|ref|YP_004806966.1| - 0.11 11.6 0.0 0.16 11.0 0.0 1.2 1 0 0 1 1 1 0 C-5 cytosine-specific DNA methylase tRNA_U5-meth_tr PF05958.6 gi|345004113|ref|YP_004806966.1| - 0.12 11.0 0.0 0.16 10.6 0.0 1.1 1 0 0 1 1 1 0 tRNA (Uracil-5-)-methyltransferase PrsW-protease PF13367.1 gi|345004116|ref|YP_004806969.1| - 3.8e-41 140.3 14.8 3.8e-41 140.3 10.2 1.5 2 0 0 2 2 2 1 Protease prsW family TP_methylase PF00590.15 gi|345004117|ref|YP_004806970.1| - 2e-20 73.4 2.0 2.9e-20 72.9 1.4 1.2 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Exosortase_EpsH PF09721.5 gi|345004118|ref|YP_004806971.1| - 1.1e-48 165.7 20.7 1.3e-48 165.4 14.3 1.0 1 0 0 1 1 1 1 Transmembrane exosortase (Exosortase_EpsH) LEA_2 PF03168.8 gi|345004119|ref|YP_004806972.1| - 0.72 10.2 6.7 7.4 7.0 0.1 4.0 3 1 1 4 4 4 0 Late embryogenesis abundant protein Plasmid_stabil PF05016.9 gi|345004121|ref|YP_004806974.1| - 0.0057 17.0 0.1 0.01 16.2 0.1 1.5 1 1 0 1 1 1 1 Plasmid stabilisation system protein RHH_1 PF01402.16 gi|345004122|ref|YP_004806975.1| - 1.4e-07 31.0 0.2 2.8e-07 30.1 0.1 1.5 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family DUF2274 PF10038.4 gi|345004122|ref|YP_004806975.1| - 0.026 14.6 0.6 0.051 13.6 0.1 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF2274) TrmB PF01978.14 gi|345004124|ref|YP_004806977.1| - 0.00019 21.0 0.0 0.00049 19.7 0.0 1.7 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.2 gi|345004124|ref|YP_004806977.1| - 0.00025 20.7 0.1 0.00066 19.4 0.1 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|345004124|ref|YP_004806977.1| - 0.0074 15.9 0.0 0.012 15.2 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_40 PF14493.1 gi|345004124|ref|YP_004806977.1| - 0.017 15.3 0.1 0.15 12.3 0.0 2.2 2 1 0 2 2 2 0 Helix-turn-helix domain Glyoxalase_2 PF12681.2 gi|345004125|ref|YP_004806978.1| - 2.3e-21 76.4 6.5 1.1e-14 54.9 0.5 2.1 2 0 0 2 2 2 2 Glyoxalase-like domain Glyoxalase PF00903.20 gi|345004125|ref|YP_004806978.1| - 8.6e-18 64.5 2.4 6.5e-14 52.0 0.3 2.7 2 1 0 2 2 2 2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_4 PF13669.1 gi|345004125|ref|YP_004806978.1| - 3.1e-15 56.1 5.7 1.3e-06 28.3 0.4 3.8 2 2 2 4 4 4 3 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_3 PF13468.1 gi|345004125|ref|YP_004806978.1| - 4.8e-06 26.5 1.8 0.019 14.8 0.2 3.9 2 2 0 2 2 2 2 Glyoxalase-like domain MMR_HSR1 PF01926.18 gi|345004126|ref|YP_004806979.1| - 3.6e-21 75.2 0.0 7.1e-21 74.3 0.0 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.13 gi|345004126|ref|YP_004806979.1| - 1.3e-13 50.5 0.1 3.4e-13 49.1 0.0 1.7 2 0 0 2 2 2 1 Ferrous iron transport protein B TGS PF02824.16 gi|345004126|ref|YP_004806979.1| - 4.9e-12 45.5 0.0 8.7e-12 44.6 0.0 1.4 1 0 0 1 1 1 1 TGS domain Dynamin_N PF00350.18 gi|345004126|ref|YP_004806979.1| - 6.2e-05 22.8 0.0 0.085 12.6 0.0 2.6 1 1 0 2 2 2 2 Dynamin family AIG1 PF04548.11 gi|345004126|ref|YP_004806979.1| - 0.00026 20.1 0.0 0.00045 19.4 0.0 1.4 1 0 0 1 1 1 1 AIG1 family AAA_28 PF13521.1 gi|345004126|ref|YP_004806979.1| - 0.00046 20.1 0.1 0.024 14.6 0.0 2.5 2 0 0 2 2 2 1 AAA domain Miro PF08477.8 gi|345004126|ref|YP_004806979.1| - 0.00089 19.7 0.1 0.0069 16.8 0.0 2.5 2 0 0 2 2 2 1 Miro-like protein ArgK PF03308.11 gi|345004126|ref|YP_004806979.1| - 0.0015 17.3 0.2 0.0067 15.2 0.0 2.2 2 1 0 2 2 2 1 ArgK protein DUF258 PF03193.11 gi|345004126|ref|YP_004806979.1| - 0.0029 16.8 0.2 0.013 14.7 0.0 2.0 2 1 0 2 2 2 1 Protein of unknown function, DUF258 ABC_tran PF00005.22 gi|345004126|ref|YP_004806979.1| - 0.0078 16.5 0.1 0.061 13.6 0.0 2.1 2 0 0 2 2 2 1 ABC transporter GTP_EFTU PF00009.22 gi|345004126|ref|YP_004806979.1| - 0.0097 15.3 0.1 0.98 8.8 0.0 2.8 2 1 0 2 2 2 1 Elongation factor Tu GTP binding domain ATP_bind_1 PF03029.12 gi|345004126|ref|YP_004806979.1| - 0.01 15.3 0.4 1.9 7.9 0.0 2.6 2 1 0 2 2 2 0 Conserved hypothetical ATP binding protein cobW PF02492.14 gi|345004126|ref|YP_004806979.1| - 0.02 14.3 1.5 2 7.8 0.0 2.8 1 1 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain Arf PF00025.16 gi|345004126|ref|YP_004806979.1| - 0.03 13.5 0.0 1.2 8.3 0.0 2.3 2 0 0 2 2 2 0 ADP-ribosylation factor family AAA_29 PF13555.1 gi|345004126|ref|YP_004806979.1| - 0.054 13.0 0.4 0.13 11.7 0.3 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|345004126|ref|YP_004806979.1| - 0.069 13.1 0.0 0.15 11.9 0.0 1.6 1 0 0 1 1 1 0 AAA ATPase domain AAA_17 PF13207.1 gi|345004126|ref|YP_004806979.1| - 0.31 11.8 2.5 0.76 10.6 0.4 2.6 2 1 0 2 2 1 0 AAA domain Acetyltransf_1 PF00583.19 gi|345004127|ref|YP_004806980.1| - 1.4e-15 57.0 0.2 2.4e-15 56.3 0.1 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|345004127|ref|YP_004806980.1| - 1.9e-13 50.5 0.2 3.5e-13 49.7 0.1 1.5 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|345004127|ref|YP_004806980.1| - 1.1e-10 41.5 0.0 2.7e-10 40.2 0.0 1.7 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|345004127|ref|YP_004806980.1| - 2.1e-06 27.7 0.0 3.9e-06 26.8 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|345004127|ref|YP_004806980.1| - 5.4e-05 23.0 0.1 0.00019 21.3 0.1 2.2 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|345004127|ref|YP_004806980.1| - 8.9e-05 22.1 0.0 0.0002 21.0 0.0 1.5 1 0 0 1 1 1 1 FR47-like protein DUF2156 PF09924.4 gi|345004127|ref|YP_004806980.1| - 0.021 13.6 0.2 0.032 13.0 0.1 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2156) Acetyltransf_13 PF13880.1 gi|345004127|ref|YP_004806980.1| - 0.13 12.0 0.0 0.35 10.6 0.0 1.7 1 0 0 1 1 1 0 ESCO1/2 acetyl-transferase DUF3749 PF12568.3 gi|345004127|ref|YP_004806980.1| - 0.13 11.8 0.0 0.21 11.1 0.0 1.3 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain AMP-binding PF00501.23 gi|345004128|ref|YP_004806981.1| - 3e-89 299.2 0.1 3.7e-89 299.0 0.1 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|345004128|ref|YP_004806981.1| - 1.1e-17 64.6 0.2 2.6e-17 63.5 0.2 1.6 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain DUF2964 PF11177.3 gi|345004129|ref|YP_004806982.1| - 0.038 13.9 0.0 0.052 13.4 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2964) MM_CoA_mutase PF01642.17 gi|345004130|ref|YP_004806983.1| - 1.2e-188 627.4 0.5 1.4e-188 627.2 0.4 1.0 1 0 0 1 1 1 1 Methylmalonyl-CoA mutase Ferritin PF00210.19 gi|345004131|ref|YP_004806984.1| - 4e-25 88.2 0.9 4.6e-25 88.0 0.6 1.1 1 0 0 1 1 1 1 Ferritin-like domain DUF1451 PF07295.6 gi|345004131|ref|YP_004806984.1| - 0.034 13.9 3.9 0.54 10.0 0.3 2.6 2 2 0 2 2 2 0 Protein of unknown function (DUF1451) SIMPL PF04402.9 gi|345004131|ref|YP_004806984.1| - 0.054 13.3 0.5 0.073 12.9 0.3 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF541) Ferritin PF00210.19 gi|345004132|ref|YP_004806985.1| - 7.4e-19 67.9 0.0 9.6e-19 67.5 0.0 1.1 1 0 0 1 1 1 1 Ferritin-like domain Ferritin PF00210.19 gi|345004133|ref|YP_004806986.1| - 3.1e-11 43.2 0.1 3.6e-11 42.9 0.0 1.1 1 0 0 1 1 1 1 Ferritin-like domain Peptidase_M42 PF05343.9 gi|345004135|ref|YP_004806988.1| - 6.6e-89 297.5 7.0 7.6e-89 297.3 4.9 1.0 1 0 0 1 1 1 1 M42 glutamyl aminopeptidase Peptidase_M20 PF01546.23 gi|345004135|ref|YP_004806988.1| - 8.8e-11 41.6 0.2 1.5e-10 40.8 0.2 1.4 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 Peptidase_M18 PF02127.10 gi|345004135|ref|YP_004806988.1| - 2.3e-06 26.3 0.6 0.03 12.8 0.1 2.2 2 0 0 2 2 2 2 Aminopeptidase I zinc metalloprotease (M18) Peptidase_M28 PF04389.12 gi|345004135|ref|YP_004806988.1| - 1.9e-05 24.4 0.7 4.6e-05 23.2 0.1 1.8 2 0 0 2 2 2 1 Peptidase family M28 MTH865 PF07747.6 gi|345004136|ref|YP_004806989.1| - 3.2e-25 87.5 0.1 3.8e-25 87.3 0.1 1.0 1 0 0 1 1 1 1 MTH865-like family Glycos_transf_1 PF00534.15 gi|345004137|ref|YP_004806990.1| - 2.1e-15 56.5 0.0 4.1e-15 55.6 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|345004137|ref|YP_004806990.1| - 9e-12 45.4 6.6 9e-12 45.4 4.6 2.3 2 1 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.1 gi|345004137|ref|YP_004806990.1| - 1.8e-05 24.5 0.0 4.6e-05 23.2 0.0 1.7 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Copper-bind PF00127.15 gi|345004138|ref|YP_004806991.1| - 2.2e-16 59.8 0.0 3.7e-16 59.1 0.0 1.3 1 0 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family TAT_signal PF10518.4 gi|345004138|ref|YP_004806991.1| - 0.012 15.5 14.7 0.012 15.5 10.2 3.3 5 0 0 5 5 5 0 TAT (twin-arginine translocation) pathway signal sequence UCR_Fe-S_N PF10399.4 gi|345004138|ref|YP_004806991.1| - 0.037 13.1 6.9 0.11 11.6 4.8 1.9 1 0 0 1 1 1 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal FAD_binding_6 PF00970.19 gi|345004139|ref|YP_004806992.1| - 1.7e-14 53.7 0.0 2.4e-14 53.2 0.0 1.2 1 0 0 1 1 1 1 Oxidoreductase FAD-binding domain FAD_binding_9 PF08021.6 gi|345004139|ref|YP_004806992.1| - 0.0066 16.4 0.0 0.021 14.7 0.0 1.9 1 1 0 1 1 1 1 Siderophore-interacting FAD-binding domain KR PF08659.5 gi|345004139|ref|YP_004806992.1| - 0.021 14.4 0.2 0.032 13.8 0.2 1.2 1 0 0 1 1 1 0 KR domain Sortase PF04203.8 gi|345004139|ref|YP_004806992.1| - 0.065 12.8 0.0 0.38 10.3 0.0 1.9 1 1 1 2 2 2 0 Sortase family GreA_GreB PF01272.14 gi|345004139|ref|YP_004806992.1| - 0.093 12.4 0.1 0.73 9.5 0.0 2.4 2 1 0 2 2 2 0 Transcription elongation factor, GreA/GreB, C-term POR_N PF01855.14 gi|345004140|ref|YP_004806993.1| - 2.5e-58 197.3 0.2 3.8e-58 196.7 0.1 1.3 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg POR PF01558.13 gi|345004140|ref|YP_004806993.1| - 4e-40 137.5 0.1 7.4e-40 136.6 0.1 1.4 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase TPP_enzyme_N PF02776.13 gi|345004140|ref|YP_004806993.1| - 2.2e-05 24.0 0.1 4.1e-05 23.1 0.1 1.4 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain MsyB PF13984.1 gi|345004140|ref|YP_004806993.1| - 0.13 12.3 3.6 3.3 7.7 0.2 2.5 2 0 0 2 2 2 0 MsyB protein Urotensin_II PF02083.10 gi|345004140|ref|YP_004806993.1| - 0.16 11.3 0.4 0.32 10.4 0.3 1.5 1 0 0 1 1 1 0 Urotensin II TPP_enzyme_C PF02775.16 gi|345004141|ref|YP_004806994.1| - 3.4e-31 107.8 0.4 5.2e-31 107.2 0.3 1.3 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PFO_beta_C PF12367.3 gi|345004141|ref|YP_004806994.1| - 8.2e-15 54.4 0.3 1.5e-14 53.6 0.2 1.5 1 0 0 1 1 1 1 Pyruvate ferredoxin oxidoreductase beta subunit C terminal Inhibitor_Mig-6 PF11555.3 gi|345004141|ref|YP_004806994.1| - 0.088 13.2 0.1 0.15 12.4 0.1 1.4 1 0 0 1 1 1 0 EGFR receptor inhibitor Mig-6 MatE PF01554.13 gi|345004142|ref|YP_004806995.1| - 2.7e-44 150.6 20.7 4.1e-24 85.0 3.0 2.6 3 1 0 3 3 3 2 MatE Polysacc_synt_C PF14667.1 gi|345004142|ref|YP_004806995.1| - 1.3e-07 31.5 24.0 0.0001 22.0 4.0 3.6 2 2 1 3 3 3 2 Polysaccharide biosynthesis C-terminal domain DAO PF01266.19 gi|345004143|ref|YP_004806996.1| - 5.9e-12 45.1 0.0 8.7e-06 24.8 0.0 2.2 2 0 0 2 2 2 2 FAD dependent oxidoreductase Lycopene_cycl PF05834.7 gi|345004143|ref|YP_004806996.1| - 3.9e-09 35.9 0.0 5.6e-09 35.3 0.0 1.2 1 0 0 1 1 1 1 Lycopene cyclase protein Trp_halogenase PF04820.9 gi|345004143|ref|YP_004806996.1| - 2e-07 30.0 0.0 0.005 15.5 0.0 2.9 2 1 1 3 3 3 2 Tryptophan halogenase Pyr_redox_2 PF07992.9 gi|345004143|ref|YP_004806996.1| - 3.1e-07 30.4 0.1 1.1e-06 28.6 0.0 2.0 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.14 gi|345004143|ref|YP_004806996.1| - 6.2e-06 25.5 0.0 2.7e-05 23.4 0.0 2.2 1 1 0 1 1 1 1 FAD binding domain FAD_binding_2 PF00890.19 gi|345004143|ref|YP_004806996.1| - 7.9e-06 24.9 0.1 1.4e-05 24.1 0.0 1.4 1 1 0 1 1 1 1 FAD binding domain FAD_oxidored PF12831.2 gi|345004143|ref|YP_004806996.1| - 2.1e-05 23.7 2.3 3.9e-05 22.9 0.5 2.0 2 1 0 2 2 2 1 FAD dependent oxidoreductase Thi4 PF01946.12 gi|345004143|ref|YP_004806996.1| - 2.2e-05 23.6 0.0 9.9e-05 21.5 0.0 1.9 2 0 0 2 2 2 1 Thi4 family GIDA PF01134.17 gi|345004143|ref|YP_004806996.1| - 7e-05 21.8 0.0 0.0068 15.3 0.0 2.1 2 0 0 2 2 2 1 Glucose inhibited division protein A HI0933_like PF03486.9 gi|345004143|ref|YP_004806996.1| - 9.1e-05 21.1 0.0 0.00036 19.1 0.1 1.8 2 0 0 2 2 2 1 HI0933-like protein NAD_binding_8 PF13450.1 gi|345004143|ref|YP_004806996.1| - 0.00016 21.6 0.1 0.00046 20.1 0.1 1.8 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain CPSase_L_chain PF00289.17 gi|345004143|ref|YP_004806996.1| - 0.006 16.6 0.0 0.025 14.6 0.0 1.9 2 0 0 2 2 2 1 Carbamoyl-phosphate synthase L chain, N-terminal domain TrkA_N PF02254.13 gi|345004143|ref|YP_004806996.1| - 0.013 15.5 0.0 0.085 12.8 0.0 2.1 2 0 0 2 2 2 0 TrkA-N domain XdhC_C PF13478.1 gi|345004143|ref|YP_004806996.1| - 0.016 15.4 0.0 0.034 14.4 0.0 1.5 1 0 0 1 1 1 0 XdhC Rossmann domain 3HCDH_N PF02737.13 gi|345004143|ref|YP_004806996.1| - 0.017 14.7 0.0 0.032 13.9 0.0 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Pyr_redox_3 PF13738.1 gi|345004143|ref|YP_004806996.1| - 0.034 14.2 0.0 0.079 13.0 0.0 1.6 1 1 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_10 PF13460.1 gi|345004143|ref|YP_004806996.1| - 0.048 13.6 0.0 0.087 12.8 0.0 1.4 1 0 0 1 1 1 0 NADH(P)-binding Pyr_redox PF00070.22 gi|345004143|ref|YP_004806996.1| - 0.11 12.8 0.0 0.24 11.8 0.0 1.5 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_7 PF13241.1 gi|345004143|ref|YP_004806996.1| - 0.13 12.5 0.0 0.25 11.6 0.0 1.5 1 0 0 1 1 1 0 Putative NAD(P)-binding Aldo_ket_red PF00248.16 gi|345004144|ref|YP_004806997.1| - 2e-58 197.4 0.0 2.3e-58 197.2 0.0 1.1 1 0 0 1 1 1 1 Aldo/keto reductase family DUF373 PF04123.8 gi|345004146|ref|YP_004806999.1| - 2.1e-106 355.8 8.8 2.5e-106 355.6 6.1 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF373) GRDA PF04723.9 gi|345004146|ref|YP_004806999.1| - 0.043 13.5 0.1 0.1 12.2 0.1 1.7 1 0 0 1 1 1 0 Glycine reductase complex selenoprotein A Salt_tol_Pase PF09506.5 gi|345004146|ref|YP_004806999.1| - 0.058 11.9 0.0 0.088 11.3 0.0 1.2 1 0 0 1 1 1 0 Glucosylglycerol-phosphate phosphatase (Salt_tol_Pase) Peptidase_S49 PF01343.13 gi|345004147|ref|YP_004807000.1| - 4.4e-41 140.2 0.0 6.7e-41 139.6 0.0 1.2 1 0 0 1 1 1 1 Peptidase family S49 CLP_protease PF00574.18 gi|345004147|ref|YP_004807000.1| - 0.00028 20.6 0.0 0.0056 16.3 0.0 2.1 2 0 0 2 2 2 1 Clp protease SDH_sah PF01972.11 gi|345004147|ref|YP_004807000.1| - 0.0014 17.4 0.0 0.0022 16.8 0.0 1.2 1 0 0 1 1 1 1 Serine dehydrogenase proteinase LMBR1 PF04791.11 gi|345004147|ref|YP_004807000.1| - 1.6 7.2 3.1 2 6.8 2.2 1.1 1 0 0 1 1 1 0 LMBR1-like membrane protein AATF-Che1 PF13339.1 gi|345004148|ref|YP_004807001.1| - 7.2 6.7 41.1 0.48 10.5 6.7 3.7 1 1 2 3 3 3 0 Apoptosis antagonizing transcription factor DUF371 PF04027.8 gi|345004149|ref|YP_004807002.1| - 3.1e-47 159.5 0.1 3.7e-47 159.2 0.1 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF371) Copper-bind PF00127.15 gi|345004150|ref|YP_004807003.1| - 5.4e-19 68.2 0.0 7.1e-19 67.8 0.0 1.1 1 0 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family Cupredoxin_1 PF13473.1 gi|345004150|ref|YP_004807003.1| - 0.00015 21.6 0.0 0.00018 21.3 0.0 1.1 1 0 0 1 1 1 1 Cupredoxin-like domain PKD PF00801.15 gi|345004150|ref|YP_004807003.1| - 0.092 12.5 5.4 0.31 10.8 3.6 2.0 1 1 0 1 1 1 0 PKD domain TAT_signal PF10518.4 gi|345004150|ref|YP_004807003.1| - 2.8 8.1 14.0 0.12 12.3 5.4 2.0 2 1 1 3 3 3 0 TAT (twin-arginine translocation) pathway signal sequence MarR PF01047.17 gi|345004151|ref|YP_004807004.1| - 0.032 13.9 0.1 0.046 13.4 0.1 1.4 1 1 0 1 1 1 0 MarR family GntR PF00392.16 gi|345004151|ref|YP_004807004.1| - 0.065 12.6 0.2 0.21 11.0 0.1 1.8 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family RQC PF09382.5 gi|345004151|ref|YP_004807004.1| - 0.079 12.6 0.1 0.78 9.4 0.0 1.9 2 0 0 2 2 2 0 RQC domain SgrR_N PF12793.2 gi|345004151|ref|YP_004807004.1| - 0.15 12.0 1.3 0.24 11.4 0.8 1.5 1 1 0 1 1 1 0 Sugar transport-related sRNA regulator N-term N6_N4_Mtase PF01555.13 gi|345004153|ref|YP_004807006.1| - 1.2e-25 90.3 0.0 1.6e-25 89.9 0.0 1.1 1 0 0 1 1 1 1 DNA methylase Methyltransf_26 PF13659.1 gi|345004153|ref|YP_004807006.1| - 3.8e-13 49.4 0.0 2.1e-06 27.7 0.0 2.6 2 1 0 2 2 2 2 Methyltransferase domain UPF0020 PF01170.13 gi|345004153|ref|YP_004807006.1| - 5.9e-07 29.2 0.0 0.075 12.5 0.0 3.1 3 0 0 3 3 3 2 Putative RNA methylase family UPF0020 N6_Mtase PF02384.11 gi|345004153|ref|YP_004807006.1| - 0.0029 16.7 0.0 0.84 8.6 0.0 2.2 2 0 0 2 2 2 2 N-6 DNA Methylase Methyltransf_18 PF12847.2 gi|345004153|ref|YP_004807006.1| - 0.0095 16.5 0.0 0.069 13.7 0.0 2.1 2 0 0 2 2 2 1 Methyltransferase domain MethyltransfD12 PF02086.10 gi|345004153|ref|YP_004807006.1| - 0.046 13.1 0.0 0.13 11.7 0.0 1.7 2 0 0 2 2 2 0 D12 class N6 adenine-specific DNA methyltransferase HTH_27 PF13463.1 gi|345004154|ref|YP_004807007.1| - 2.2e-07 31.0 0.5 4e-07 30.2 0.3 1.5 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_45 PF14947.1 gi|345004154|ref|YP_004807007.1| - 1.1e-05 25.1 0.0 1.4e-05 24.7 0.0 1.1 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_34 PF13601.1 gi|345004154|ref|YP_004807007.1| - 0.00046 20.1 0.0 0.00061 19.7 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain DUF4364 PF14277.1 gi|345004154|ref|YP_004807007.1| - 0.0092 15.6 0.0 0.012 15.2 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4364) PadR PF03551.9 gi|345004154|ref|YP_004807007.1| - 0.068 12.9 0.1 0.12 12.1 0.0 1.5 1 1 0 1 1 1 0 Transcriptional regulator PadR-like family MarR_2 PF12802.2 gi|345004154|ref|YP_004807007.1| - 0.11 12.1 0.3 0.17 11.5 0.2 1.4 1 0 0 1 1 1 0 MarR family DUF1918 PF08940.6 gi|345004155|ref|YP_004807008.1| - 0.35 10.2 2.5 1.4 8.2 1.0 2.4 1 1 0 1 1 1 0 Domain of unknown function (DUF1918) Beta-Casp PF10996.3 gi|345004156|ref|YP_004807009.1| - 1.3e-31 109.0 0.0 3.1e-31 107.9 0.0 1.7 1 0 0 1 1 1 1 Beta-Casp domain Lactamase_B PF00753.22 gi|345004156|ref|YP_004807009.1| - 4e-22 78.8 1.4 7.7e-22 77.8 1.0 1.5 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily RMMBL PF07521.7 gi|345004156|ref|YP_004807009.1| - 1.8e-12 46.8 0.0 4.6e-12 45.5 0.0 1.8 2 0 0 2 2 2 1 RNA-metabolising metallo-beta-lactamase Lactamase_B_2 PF12706.2 gi|345004156|ref|YP_004807009.1| - 1.6e-11 44.1 0.0 3.4e-11 43.0 0.0 1.6 1 0 0 1 1 1 1 Beta-lactamase superfamily domain KH_2 PF07650.12 gi|345004156|ref|YP_004807009.1| - 2.2e-08 33.5 0.1 4.9e-07 29.2 0.0 2.5 2 0 0 2 2 2 1 KH domain KH_1 PF00013.24 gi|345004156|ref|YP_004807009.1| - 0.00017 21.1 0.1 0.00044 19.8 0.1 1.7 1 0 0 1 1 1 1 KH domain Lactamase_B_3 PF13483.1 gi|345004156|ref|YP_004807009.1| - 0.00019 21.1 0.1 0.00045 19.9 0.0 1.6 2 0 0 2 2 2 1 Beta-lactamase superfamily domain KH_4 PF13083.1 gi|345004156|ref|YP_004807009.1| - 0.0012 18.4 0.1 0.0028 17.2 0.0 1.6 1 0 0 1 1 1 1 KH domain KH_3 PF13014.1 gi|345004156|ref|YP_004807009.1| - 0.092 12.4 0.4 0.21 11.2 0.3 1.6 1 0 0 1 1 1 0 KH domain HGTP_anticodon PF03129.15 gi|345004158|ref|YP_004807011.1| - 6.6e-21 74.0 0.1 1.5e-20 72.9 0.0 1.6 1 0 0 1 1 1 1 Anticodon binding domain tRNA-synt_2b PF00587.20 gi|345004158|ref|YP_004807011.1| - 1.7e-18 66.8 0.1 4.7e-18 65.3 0.0 1.7 2 0 0 2 2 2 1 tRNA synthetase class II core domain (G, H, P, S and T) ProRS-C_1 PF09180.6 gi|345004158|ref|YP_004807011.1| - 2.8e-16 59.1 0.0 7.4e-16 57.8 0.0 1.7 1 0 0 1 1 1 1 Prolyl-tRNA synthetase, C-terminal Amidohydro_2 PF04909.9 gi|345004159|ref|YP_004807012.1| - 4.5e-10 39.5 0.4 5.7e-10 39.2 0.3 1.1 1 0 0 1 1 1 1 Amidohydrolase OrfB_Zn_ribbon PF07282.6 gi|345004160|ref|YP_004807013.1| - 1.8e-19 69.1 1.1 3.2e-19 68.3 0.8 1.4 1 0 0 1 1 1 1 Putative transposase DNA-binding domain Glycohydro_20b2 PF14845.1 gi|345004160|ref|YP_004807013.1| - 0.33 11.6 3.4 2.8 8.5 0.0 2.6 2 1 0 2 2 2 0 beta-acetyl hexosaminidase like Zn_Tnp_IS1595 PF12760.2 gi|345004160|ref|YP_004807013.1| - 0.75 9.6 4.8 1.6 8.6 3.3 1.5 1 0 0 1 1 1 0 Transposase zinc-ribbon domain HSP20 PF00011.16 gi|345004161|ref|YP_004807014.1| - 1e-08 34.9 0.0 1.2e-08 34.6 0.0 1.1 1 0 0 1 1 1 1 Hsp20/alpha crystallin family ABC1 PF03109.11 gi|345004162|ref|YP_004807015.1| - 8.5e-27 93.5 0.0 2.1e-26 92.2 0.0 1.7 1 0 0 1 1 1 1 ABC1 family APH PF01636.18 gi|345004162|ref|YP_004807015.1| - 0.0029 17.3 0.6 0.38 10.4 0.1 2.9 1 1 0 2 2 2 2 Phosphotransferase enzyme family RIO1 PF01163.17 gi|345004162|ref|YP_004807015.1| - 0.0031 16.9 0.0 0.011 15.0 0.0 1.9 2 0 0 2 2 2 1 RIO1 family Pkinase PF00069.20 gi|345004162|ref|YP_004807015.1| - 0.018 14.2 0.0 0.077 12.1 0.0 1.9 2 0 0 2 2 2 0 Protein kinase domain Aminotran_1_2 PF00155.16 gi|345004163|ref|YP_004807016.1| - 6.7e-42 143.7 0.0 8.1e-42 143.4 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.14 gi|345004163|ref|YP_004807016.1| - 1.6e-09 36.9 0.0 2.2e-09 36.5 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.16 gi|345004163|ref|YP_004807016.1| - 4.4e-06 26.0 0.0 7.6e-06 25.2 0.0 1.4 1 1 0 1 1 1 1 Beta-eliminating lyase Cys_Met_Meta_PP PF01053.15 gi|345004163|ref|YP_004807016.1| - 0.00088 17.6 0.0 0.0011 17.2 0.0 1.1 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme DegT_DnrJ_EryC1 PF01041.12 gi|345004163|ref|YP_004807016.1| - 0.0029 16.6 0.0 0.0041 16.2 0.0 1.3 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Alliinase_C PF04864.8 gi|345004163|ref|YP_004807016.1| - 0.0053 15.4 0.0 0.0067 15.1 0.0 1.1 1 0 0 1 1 1 1 Allinase Pyrophosphatase PF00719.14 gi|345004165|ref|YP_004807018.1| - 4.8e-54 182.0 0.7 5.5e-54 181.8 0.5 1.0 1 0 0 1 1 1 1 Inorganic pyrophosphatase PadR PF03551.9 gi|345004166|ref|YP_004807019.1| - 1.5e-16 59.8 0.7 2.1e-16 59.4 0.5 1.2 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_27 PF13463.1 gi|345004166|ref|YP_004807019.1| - 4.3e-06 26.9 0.1 8.3e-06 26.0 0.0 1.5 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_45 PF14947.1 gi|345004166|ref|YP_004807019.1| - 0.012 15.3 0.1 0.017 14.9 0.1 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DUF505 PF04458.7 gi|345004166|ref|YP_004807019.1| - 0.013 13.6 0.2 0.014 13.5 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF505) DUF1495 PF07381.6 gi|345004166|ref|YP_004807019.1| - 0.024 14.2 0.0 0.035 13.7 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain (DUF1495) DUF4364 PF14277.1 gi|345004166|ref|YP_004807019.1| - 0.033 13.8 0.0 0.048 13.2 0.0 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4364) HTH_34 PF13601.1 gi|345004166|ref|YP_004807019.1| - 0.1 12.6 0.0 0.14 12.1 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain RVT_3 PF13456.1 gi|345004168|ref|YP_004807021.1| - 4.2e-21 74.5 0.0 5.5e-21 74.1 0.0 1.2 1 0 0 1 1 1 1 Reverse transcriptase-like RNase_H PF00075.19 gi|345004168|ref|YP_004807021.1| - 4.7e-14 52.8 0.0 7.5e-14 52.2 0.0 1.3 1 0 0 1 1 1 1 RNase H Mac PF12464.3 gi|345004168|ref|YP_004807021.1| - 0.065 13.2 0.1 0.12 12.3 0.0 1.4 1 0 0 1 1 1 0 Maltose acetyltransferase Metallophos_2 PF12850.2 gi|345004168|ref|YP_004807021.1| - 0.14 12.0 0.1 0.79 9.5 0.1 2.1 1 1 0 1 1 1 0 Calcineurin-like phosphoesterase superfamily domain TauE PF01925.14 gi|345004169|ref|YP_004807022.1| - 1e-17 64.3 45.5 1.3e-17 64.0 31.5 1.1 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE DUF650 PF04894.7 gi|345004170|ref|YP_004807023.1| - 1.2e-99 333.2 0.0 1.4e-99 333.0 0.0 1.1 1 0 0 1 1 1 1 Archaeal protein of unknown function (DUF650) DUF651 PF04895.7 gi|345004170|ref|YP_004807023.1| - 1.5e-32 111.4 0.0 2.6e-32 110.7 0.0 1.4 1 0 0 1 1 1 1 Archaeal protein of unknown function (DUF651) DUF3526 PF12040.3 gi|345004170|ref|YP_004807023.1| - 0.076 13.1 0.0 0.22 11.6 0.0 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF3526) DUF3071 PF11268.3 gi|345004171|ref|YP_004807024.1| - 0.045 13.4 0.0 0.057 13.1 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3071) DUF1469 PF07332.6 gi|345004172|ref|YP_004807025.1| - 0.017 14.8 4.1 0.017 14.8 2.8 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF1469) Virul_fac_BrkB PF03631.10 gi|345004172|ref|YP_004807025.1| - 0.064 12.6 10.5 0.083 12.2 7.3 1.2 1 0 0 1 1 1 0 Virulence factor BrkB DUF605 PF04652.11 gi|345004172|ref|YP_004807025.1| - 1.3 8.3 16.6 1.7 7.9 11.5 1.1 1 0 0 1 1 1 0 Vta1 like DNA_pol_B_thumb PF14791.1 gi|345004173|ref|YP_004807026.1| - 1.5e-22 79.0 0.0 3.5e-22 77.8 0.0 1.7 1 0 0 1 1 1 1 DNA polymerase beta thumb HHH_8 PF14716.1 gi|345004173|ref|YP_004807026.1| - 3.3e-16 59.2 2.0 7.5e-14 51.6 0.2 3.5 2 1 1 3 3 3 1 Helix-hairpin-helix domain PHP PF02811.14 gi|345004173|ref|YP_004807026.1| - 1.5e-13 50.9 0.0 4.5e-13 49.3 0.0 1.8 2 0 0 2 2 2 1 PHP domain HHH_5 PF14520.1 gi|345004173|ref|YP_004807026.1| - 1e-12 48.0 7.6 2e-10 40.6 0.1 3.5 3 1 0 3 3 3 2 Helix-hairpin-helix domain HHH_2 PF12826.2 gi|345004173|ref|YP_004807026.1| - 0.00013 21.7 0.8 0.53 10.2 0.1 3.1 1 1 2 3 3 3 3 Helix-hairpin-helix motif HHH PF00633.18 gi|345004173|ref|YP_004807026.1| - 0.00027 20.4 0.0 0.003 17.1 0.0 2.8 2 0 0 2 2 2 1 Helix-hairpin-helix motif DNA_pol_lambd_f PF10391.4 gi|345004173|ref|YP_004807026.1| - 0.0028 17.1 0.0 0.021 14.3 0.0 2.5 1 1 1 2 2 2 1 Fingers domain of DNA polymerase lambda DNA_pol_B_palm PF14792.1 gi|345004173|ref|YP_004807026.1| - 0.018 15.1 0.0 0.081 12.9 0.0 2.1 2 0 0 2 2 2 0 DNA polymerase beta palm Peptidase_M32 PF02074.10 gi|345004175|ref|YP_004807028.1| - 2.6e-144 481.5 0.0 3.1e-144 481.2 0.0 1.0 1 0 0 1 1 1 1 Carboxypeptidase Taq (M32) metallopeptidase 7TMR-HDED PF07697.6 gi|345004175|ref|YP_004807028.1| - 0.031 13.9 0.5 0.058 13.1 0.3 1.4 1 0 0 1 1 1 0 7TM-HD extracellular DUF1028 PF06267.7 gi|345004176|ref|YP_004807029.1| - 3.8e-48 163.4 0.0 4.5e-48 163.2 0.0 1.1 1 0 0 1 1 1 1 Family of unknown function (DUF1028) DUF552 PF04472.7 gi|345004177|ref|YP_004807030.1| - 1.2e-17 63.5 1.4 1.6e-17 63.2 0.9 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF552) Mog1 PF04603.7 gi|345004177|ref|YP_004807030.1| - 0.019 14.9 0.3 0.023 14.6 0.2 1.1 1 0 0 1 1 1 0 Ran-interacting Mog1 protein PrsW-protease PF13367.1 gi|345004178|ref|YP_004807031.1| - 4.7e-43 146.6 16.4 4.7e-43 146.6 11.3 1.6 2 0 0 2 2 2 1 Protease prsW family DUF402 PF04167.8 gi|345004179|ref|YP_004807032.1| - 5.5e-23 80.5 0.5 9.7e-23 79.7 0.3 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF402) S1 PF00575.18 gi|345004179|ref|YP_004807032.1| - 7e-05 22.8 1.6 0.00021 21.3 1.1 1.8 1 1 0 1 1 1 1 S1 RNA binding domain NifU PF01106.12 gi|345004180|ref|YP_004807033.1| - 8.2e-08 31.9 0.3 1.9e-07 30.7 0.1 1.6 1 1 1 2 2 2 1 NifU-like domain LVIVD PF08309.6 gi|345004181|ref|YP_004807034.1| - 5.8e-18 63.5 3.1 5.1e-06 25.3 0.0 5.6 5 0 0 5 5 5 4 LVIVD repeat SBP56 PF05694.6 gi|345004181|ref|YP_004807034.1| - 0.0067 14.9 0.1 0.34 9.3 0.0 2.8 2 1 1 3 3 3 1 56kDa selenium binding protein (SBP56) Beta_propel PF09826.4 gi|345004181|ref|YP_004807034.1| - 0.014 13.7 0.0 3.6 5.8 0.0 3.5 4 1 0 4 4 4 0 Beta propeller domain GCV_T PF01571.16 gi|345004182|ref|YP_004807035.1| - 8.9e-39 133.0 0.0 1.3e-38 132.5 0.0 1.1 1 0 0 1 1 1 1 Aminomethyltransferase folate-binding domain GCV_T_C PF08669.6 gi|345004182|ref|YP_004807035.1| - 1.2e-17 63.6 0.0 3e-17 62.4 0.0 1.7 1 0 0 1 1 1 1 Glycine cleavage T-protein C-terminal barrel domain HTH_20 PF12840.2 gi|345004183|ref|YP_004807036.1| - 0.00066 19.4 0.2 0.0011 18.7 0.2 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|345004183|ref|YP_004807036.1| - 0.0028 17.2 1.2 0.0028 17.2 0.8 1.4 2 0 0 2 2 2 1 MarR family HTH_34 PF13601.1 gi|345004183|ref|YP_004807036.1| - 0.0064 16.5 0.0 0.0079 16.2 0.0 1.1 1 0 0 1 1 1 1 Winged helix DNA-binding domain Rrf2 PF02082.15 gi|345004183|ref|YP_004807036.1| - 0.034 14.2 0.0 0.058 13.5 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator zinc_ribbon_2 PF13240.1 gi|345004184|ref|YP_004807037.1| - 0.019 14.4 1.4 0.8 9.2 0.2 2.6 2 1 0 2 2 2 0 zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|345004184|ref|YP_004807037.1| - 0.027 14.4 5.3 0.25 11.3 0.8 2.5 2 0 0 2 2 2 0 Zinc ribbon domain DZR PF12773.2 gi|345004184|ref|YP_004807037.1| - 0.12 12.2 2.3 2.4 8.0 0.3 2.5 2 0 0 2 2 2 0 Double zinc ribbon zf-RING_3 PF14369.1 gi|345004184|ref|YP_004807037.1| - 0.23 11.4 4.1 0.71 9.9 1.3 2.9 2 1 1 3 3 3 0 zinc-finger TF_Zn_Ribbon PF08271.7 gi|345004184|ref|YP_004807037.1| - 1.4 8.3 10.2 0.16 11.3 1.0 3.4 3 0 0 3 3 3 0 TFIIB zinc-binding zf-ribbon_3 PF13248.1 gi|345004184|ref|YP_004807037.1| - 6.5 6.0 10.8 10 5.5 0.1 3.2 2 1 1 3 3 3 0 zinc-ribbon domain FAD_binding_3 PF01494.14 gi|345004186|ref|YP_004807039.1| - 5e-17 62.0 2.8 9e-15 54.5 0.1 2.9 2 1 0 2 2 2 1 FAD binding domain DAO PF01266.19 gi|345004186|ref|YP_004807039.1| - 3.4e-09 36.0 6.6 3.1e-05 23.0 0.3 2.2 1 1 0 2 2 2 2 FAD dependent oxidoreductase Lycopene_cycl PF05834.7 gi|345004186|ref|YP_004807039.1| - 6.1e-09 35.2 0.0 0.0012 17.8 0.0 2.2 2 0 0 2 2 2 2 Lycopene cyclase protein FAD_oxidored PF12831.2 gi|345004186|ref|YP_004807039.1| - 7.4e-07 28.5 0.2 1e-06 28.1 0.2 1.1 1 0 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.9 gi|345004186|ref|YP_004807039.1| - 2.7e-06 27.4 0.0 7.8e-05 22.6 0.0 2.2 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|345004186|ref|YP_004807039.1| - 0.00031 20.8 0.0 0.00061 19.8 0.0 1.5 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|345004186|ref|YP_004807039.1| - 0.00039 19.0 0.0 0.017 13.6 0.0 2.1 2 0 0 2 2 2 1 HI0933-like protein FAD_binding_2 PF00890.19 gi|345004186|ref|YP_004807039.1| - 0.0096 14.8 3.3 0.011 14.6 1.3 1.8 1 1 1 2 2 2 1 FAD binding domain Pyr_redox PF00070.22 gi|345004186|ref|YP_004807039.1| - 0.038 14.3 2.1 0.63 10.4 0.0 2.9 3 0 0 3 3 3 0 Pyridine nucleotide-disulphide oxidoreductase Trp_halogenase PF04820.9 gi|345004186|ref|YP_004807039.1| - 0.041 12.5 2.2 0.17 10.5 0.1 2.3 2 1 0 2 2 2 0 Tryptophan halogenase NAD_binding_8 PF13450.1 gi|345004186|ref|YP_004807039.1| - 0.051 13.6 0.4 0.16 11.9 0.3 1.9 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain SE PF08491.5 gi|345004186|ref|YP_004807039.1| - 0.053 12.3 0.0 0.44 9.3 0.0 2.0 2 0 0 2 2 2 0 Squalene epoxidase NAD_binding_2 PF03446.10 gi|345004186|ref|YP_004807039.1| - 0.089 12.6 0.0 0.2 11.4 0.0 1.6 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase 2-Hacid_dh_C PF02826.14 gi|345004186|ref|YP_004807039.1| - 0.13 11.3 0.1 0.23 10.5 0.0 1.4 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_9 PF13454.1 gi|345004186|ref|YP_004807039.1| - 0.36 10.5 1.9 17 5.1 0.1 2.8 3 0 0 3 3 3 0 FAD-NAD(P)-binding PSII_BNR PF14870.1 gi|345004187|ref|YP_004807040.1| - 9.6e-07 28.0 1.5 0.004 16.1 0.0 3.0 3 0 0 3 3 3 2 Photosynthesis system II assembly factor YCF48 DUF4185 PF13810.1 gi|345004187|ref|YP_004807040.1| - 0.012 14.5 5.0 2.4 7.0 0.0 3.5 3 1 1 4 4 4 0 Domain of unknown function (DUF4185) BNR PF02012.15 gi|345004187|ref|YP_004807040.1| - 0.021 14.6 18.2 0.054 13.3 0.2 4.6 4 0 0 4 4 4 0 BNR/Asp-box repeat TAT_signal PF10518.4 gi|345004188|ref|YP_004807041.1| - 0.013 15.4 1.9 0.026 14.5 1.3 1.5 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence ABC_tran PF00005.22 gi|345004189|ref|YP_004807042.1| - 1.5e-20 73.8 0.0 4.9e-11 43.0 0.0 4.4 3 2 0 3 3 3 3 ABC transporter SMC_N PF02463.14 gi|345004189|ref|YP_004807042.1| - 3.2e-11 42.8 0.0 0.093 11.9 0.0 4.1 4 0 0 4 4 4 4 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|345004189|ref|YP_004807042.1| - 1.7e-08 33.8 0.0 0.0016 17.9 0.0 2.5 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_21 PF13304.1 gi|345004189|ref|YP_004807042.1| - 1.1e-07 32.1 2.5 0.06 13.2 0.0 4.2 4 0 0 4 4 4 2 AAA domain AAA_25 PF13481.1 gi|345004189|ref|YP_004807042.1| - 2.6e-06 26.9 0.0 0.12 11.7 0.0 3.4 3 0 0 3 3 3 2 AAA domain AAA_22 PF13401.1 gi|345004189|ref|YP_004807042.1| - 9.2e-06 25.8 0.3 0.18 11.9 0.0 3.6 3 1 0 3 3 3 2 AAA domain AAA_23 PF13476.1 gi|345004189|ref|YP_004807042.1| - 2.6e-05 24.6 0.3 0.029 14.6 0.0 2.8 3 0 0 3 3 2 1 AAA domain DUF258 PF03193.11 gi|345004189|ref|YP_004807042.1| - 6.3e-05 22.2 0.0 0.18 11.0 0.0 2.3 2 0 0 2 2 2 2 Protein of unknown function, DUF258 DnaJ_CXXCXGXG PF00684.14 gi|345004189|ref|YP_004807042.1| - 6.3e-05 22.9 13.4 0.0016 18.4 1.1 3.7 4 0 0 4 4 3 2 DnaJ central domain AAA_16 PF13191.1 gi|345004189|ref|YP_004807042.1| - 0.00011 22.2 1.8 0.12 12.3 0.0 3.2 3 1 0 3 3 2 1 AAA ATPase domain AAA_10 PF12846.2 gi|345004189|ref|YP_004807042.1| - 0.00011 21.7 1.9 0.026 13.9 0.0 2.9 2 1 0 2 2 2 1 AAA-like domain AAA_33 PF13671.1 gi|345004189|ref|YP_004807042.1| - 0.00042 20.1 0.1 0.92 9.3 0.0 3.4 3 0 0 3 3 3 1 AAA domain KaiC PF06745.8 gi|345004189|ref|YP_004807042.1| - 0.00057 19.0 0.0 0.13 11.4 0.0 2.8 3 0 0 3 3 3 1 KaiC AAA_14 PF13173.1 gi|345004189|ref|YP_004807042.1| - 0.00099 19.0 0.0 1.2 9.0 0.0 3.3 3 0 0 3 3 3 1 AAA domain AAA_18 PF13238.1 gi|345004189|ref|YP_004807042.1| - 0.0026 18.0 1.0 2.5 8.4 0.0 3.7 4 0 0 4 4 3 1 AAA domain DUF2075 PF09848.4 gi|345004189|ref|YP_004807042.1| - 0.0076 15.2 0.1 1.9 7.3 0.0 2.4 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2075) APS_kinase PF01583.15 gi|345004189|ref|YP_004807042.1| - 0.0084 15.7 0.1 4.7 6.8 0.0 2.8 2 0 0 2 2 2 1 Adenylylsulphate kinase Viral_helicase1 PF01443.13 gi|345004189|ref|YP_004807042.1| - 0.015 14.8 0.3 0.65 9.4 0.0 2.7 3 0 0 3 3 3 0 Viral (Superfamily 1) RNA helicase MobB PF03205.9 gi|345004189|ref|YP_004807042.1| - 0.022 14.4 0.2 0.68 9.6 0.0 2.8 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B NACHT PF05729.7 gi|345004189|ref|YP_004807042.1| - 0.03 13.9 0.0 0.92 9.1 0.0 2.3 2 0 0 2 2 2 0 NACHT domain AAA_15 PF13175.1 gi|345004189|ref|YP_004807042.1| - 0.035 13.1 0.0 1 8.3 0.0 2.5 3 0 0 3 3 3 0 AAA ATPase domain cobW PF02492.14 gi|345004189|ref|YP_004807042.1| - 0.052 13.0 0.1 2.3 7.6 0.0 2.4 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain Zn-ribbon_8 PF09723.5 gi|345004189|ref|YP_004807042.1| - 0.052 13.4 17.8 1.2 9.1 0.8 4.5 4 0 0 4 4 4 0 Zinc ribbon domain Miro PF08477.8 gi|345004189|ref|YP_004807042.1| - 0.079 13.4 0.1 11 6.4 0.0 2.9 3 0 0 3 3 2 0 Miro-like protein AAA_19 PF13245.1 gi|345004189|ref|YP_004807042.1| - 0.11 12.3 1.0 14 5.5 0.0 3.3 4 0 0 4 4 2 0 Part of AAA domain AAA_30 PF13604.1 gi|345004189|ref|YP_004807042.1| - 0.11 12.0 0.6 10 5.6 0.1 2.9 3 0 0 3 3 3 0 AAA domain RNA_helicase PF00910.17 gi|345004189|ref|YP_004807042.1| - 0.19 11.9 0.1 4.8 7.4 0.0 2.4 2 0 0 2 2 2 0 RNA helicase RNA12 PF10443.4 gi|345004189|ref|YP_004807042.1| - 0.2 10.1 0.0 2.2 6.6 0.0 2.1 2 0 0 2 2 2 0 RNA12 protein MMR_HSR1 PF01926.18 gi|345004189|ref|YP_004807042.1| - 0.21 11.5 1.9 7 6.6 0.0 3.7 5 0 0 5 5 4 0 50S ribosome-binding GTPase DUF87 PF01935.12 gi|345004189|ref|YP_004807042.1| - 0.46 10.2 2.2 0.64 9.7 0.0 2.3 3 0 0 3 3 2 0 Domain of unknown function DUF87 AAA_17 PF13207.1 gi|345004189|ref|YP_004807042.1| - 0.87 10.4 14.5 1.1 10.0 0.1 4.4 5 1 1 6 6 3 0 AAA domain T2SE PF00437.15 gi|345004190|ref|YP_004807043.1| - 2.4e-13 49.6 0.1 4.2e-13 48.8 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein KH_1 PF00013.24 gi|345004190|ref|YP_004807043.1| - 6.5e-08 32.0 2.2 2.5e-07 30.2 1.5 2.1 1 1 0 1 1 1 1 KH domain AAA_17 PF13207.1 gi|345004190|ref|YP_004807043.1| - 2.2e-05 25.2 0.0 0.0001 23.0 0.0 2.2 2 0 0 2 2 1 1 AAA domain PIN PF01850.16 gi|345004190|ref|YP_004807043.1| - 4.5e-05 23.7 0.0 9.9e-05 22.6 0.0 1.6 1 0 0 1 1 1 1 PIN domain KH_3 PF13014.1 gi|345004190|ref|YP_004807043.1| - 0.00013 21.5 0.5 0.00059 19.4 0.3 2.3 2 0 0 2 2 2 1 KH domain Zeta_toxin PF06414.7 gi|345004190|ref|YP_004807043.1| - 0.00015 20.9 0.0 0.00028 20.0 0.0 1.3 1 0 0 1 1 1 1 Zeta toxin KH_2 PF07650.12 gi|345004190|ref|YP_004807043.1| - 0.00035 20.0 0.5 0.00088 18.7 0.4 1.6 1 0 0 1 1 1 1 KH domain Thymidylate_kin PF02223.12 gi|345004190|ref|YP_004807043.1| - 0.0013 18.1 0.0 0.0042 16.4 0.0 1.8 1 1 1 2 2 2 1 Thymidylate kinase AAA_18 PF13238.1 gi|345004190|ref|YP_004807043.1| - 0.0014 18.8 0.0 0.017 15.4 0.0 2.4 2 0 0 2 2 2 1 AAA domain AAA_14 PF13173.1 gi|345004190|ref|YP_004807043.1| - 0.003 17.4 0.0 0.0071 16.2 0.0 1.6 1 0 0 1 1 1 1 AAA domain NTPase_1 PF03266.10 gi|345004190|ref|YP_004807043.1| - 0.0032 17.1 0.0 0.0077 15.9 0.0 1.7 1 0 0 1 1 1 1 NTPase AAA_30 PF13604.1 gi|345004190|ref|YP_004807043.1| - 0.0039 16.7 0.0 0.0087 15.6 0.0 1.5 1 0 0 1 1 1 1 AAA domain IstB_IS21 PF01695.12 gi|345004190|ref|YP_004807043.1| - 0.0048 16.3 0.0 0.0084 15.5 0.0 1.3 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_29 PF13555.1 gi|345004190|ref|YP_004807043.1| - 0.0054 16.2 0.0 0.014 14.9 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_33 PF13671.1 gi|345004190|ref|YP_004807043.1| - 0.0061 16.4 0.0 0.016 15.1 0.0 1.7 1 0 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|345004190|ref|YP_004807043.1| - 0.0078 15.9 0.0 0.021 14.5 0.0 1.7 1 0 0 1 1 1 1 Part of AAA domain AAA PF00004.24 gi|345004190|ref|YP_004807043.1| - 0.008 16.3 0.0 0.017 15.3 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.1 gi|345004190|ref|YP_004807043.1| - 0.012 15.6 0.0 0.029 14.3 0.0 1.6 1 0 0 1 1 1 0 AAA ATPase domain AAA_5 PF07728.9 gi|345004190|ref|YP_004807043.1| - 0.018 14.7 0.0 0.036 13.7 0.0 1.5 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_22 PF13401.1 gi|345004190|ref|YP_004807043.1| - 0.022 14.9 0.0 0.05 13.7 0.0 1.6 1 0 0 1 1 1 0 AAA domain KTI12 PF08433.5 gi|345004190|ref|YP_004807043.1| - 0.023 13.9 0.0 0.044 12.9 0.0 1.4 1 0 0 1 1 1 0 Chromatin associated protein KTI12 FtsK_SpoIIIE PF01580.13 gi|345004190|ref|YP_004807043.1| - 0.024 14.0 0.0 0.06 12.8 0.0 1.6 1 0 0 1 1 1 0 FtsK/SpoIIIE family ATP_bind_1 PF03029.12 gi|345004190|ref|YP_004807043.1| - 0.034 13.6 0.0 0.056 12.9 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein KaiC PF06745.8 gi|345004190|ref|YP_004807043.1| - 0.036 13.1 0.0 0.09 11.8 0.0 1.6 2 0 0 2 2 1 0 KaiC AAA_25 PF13481.1 gi|345004190|ref|YP_004807043.1| - 0.039 13.3 0.0 0.11 11.8 0.0 1.8 1 0 0 1 1 1 0 AAA domain KH_5 PF13184.1 gi|345004190|ref|YP_004807043.1| - 0.044 13.5 0.8 0.14 12.0 0.1 2.2 2 0 0 2 2 1 0 NusA-like KH domain NACHT PF05729.7 gi|345004190|ref|YP_004807043.1| - 0.12 12.0 0.0 0.19 11.3 0.0 1.3 1 0 0 1 1 1 0 NACHT domain Peptidase_M20 PF01546.23 gi|345004191|ref|YP_004807044.1| - 1.9e-26 92.7 2.6 2.4e-26 92.3 1.8 1.1 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.9 gi|345004191|ref|YP_004807044.1| - 1.4e-14 53.7 0.7 3.9e-14 52.3 0.1 2.1 3 0 0 3 3 3 1 Peptidase dimerisation domain DDE_Tnp_1 PF01609.16 gi|345004193|ref|YP_004807046.1| - 0.018 14.5 0.0 0.071 12.6 0.0 1.9 1 1 0 1 1 1 0 Transposase DDE domain AAA_23 PF13476.1 gi|345004194|ref|YP_004807047.1| - 4e-10 40.3 0.3 4.5e-10 40.1 0.2 1.1 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|345004194|ref|YP_004807047.1| - 5.8e-07 28.9 0.8 2e-06 27.1 0.0 1.8 1 1 0 2 2 2 1 RecF/RecN/SMC N terminal domain DUF2813 PF11398.3 gi|345004194|ref|YP_004807047.1| - 1.4e-05 24.3 0.0 2.8e-05 23.4 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF2813) AAA_15 PF13175.1 gi|345004194|ref|YP_004807047.1| - 1.9e-05 23.8 2.0 5.5e-05 22.4 0.1 2.0 1 1 1 2 2 2 1 AAA ATPase domain AAA_21 PF13304.1 gi|345004194|ref|YP_004807047.1| - 2.3e-05 24.5 0.4 4.6e-05 23.5 0.3 1.7 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|345004194|ref|YP_004807047.1| - 5.3e-05 22.6 0.0 0.00011 21.7 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain Arch_ATPase PF01637.13 gi|345004194|ref|YP_004807047.1| - 0.00093 18.9 0.1 0.0019 17.9 0.1 1.5 1 1 0 1 1 1 1 Archaeal ATPase AAA_16 PF13191.1 gi|345004194|ref|YP_004807047.1| - 0.045 13.7 0.2 0.089 12.7 0.2 1.5 1 1 0 1 1 1 0 AAA ATPase domain Dynamin_N PF00350.18 gi|345004194|ref|YP_004807047.1| - 0.053 13.3 0.1 3.6 7.3 0.0 2.5 2 1 0 2 2 2 0 Dynamin family MMR_HSR1 PF01926.18 gi|345004194|ref|YP_004807047.1| - 0.07 13.0 0.1 0.34 10.8 0.1 2.1 1 1 0 1 1 1 0 50S ribosome-binding GTPase PUA PF01472.15 gi|345004195|ref|YP_004807048.1| - 2.7e-19 68.6 3.9 4.2e-19 68.0 2.7 1.3 1 0 0 1 1 1 1 PUA domain GATA PF00320.22 gi|345004196|ref|YP_004807049.1| - 0.00039 19.7 0.9 0.041 13.2 0.2 2.3 2 0 0 2 2 2 2 GATA zinc finger fn1 PF00039.13 gi|345004196|ref|YP_004807049.1| - 0.61 9.9 3.6 5.6 6.8 1.8 2.3 1 1 1 2 2 2 0 Fibronectin type I domain Zn-ribbon_8 PF09723.5 gi|345004196|ref|YP_004807049.1| - 2.8 7.9 5.1 14 5.7 0.1 2.4 2 1 0 2 2 2 0 Zinc ribbon domain RNB PF00773.14 gi|345004197|ref|YP_004807050.1| - 5.3e-78 262.5 0.0 9.8e-76 255.1 0.0 2.2 1 1 0 1 1 1 1 RNB domain DUF982 PF06169.7 gi|345004197|ref|YP_004807050.1| - 0.023 14.4 0.0 0.06 13.0 0.0 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF982) zinc_ribbon_5 PF13719.1 gi|345004198|ref|YP_004807051.1| - 0.12 11.9 0.1 0.18 11.4 0.1 1.2 1 0 0 1 1 1 0 zinc-ribbon domain CRISPR_Cas2 PF09827.4 gi|345004200|ref|YP_004807053.1| - 3.6e-22 78.2 0.1 4e-22 78.1 0.1 1.0 1 0 0 1 1 1 1 CRISPR associated protein Cas2 MIase PF02426.11 gi|345004200|ref|YP_004807053.1| - 0.028 14.2 0.3 0.036 13.8 0.2 1.4 1 1 0 1 1 1 0 Muconolactone delta-isomerase Cas_Cas1 PF01867.11 gi|345004201|ref|YP_004807054.1| - 2e-74 250.2 0.0 2.4e-74 249.9 0.0 1.1 1 0 0 1 1 1 1 CRISPR associated protein Cas1 Peptidase_S80 PF07230.6 gi|345004201|ref|YP_004807054.1| - 0.058 11.6 0.1 0.085 11.1 0.0 1.1 1 0 0 1 1 1 0 Bacteriophage T4-like capsid assembly protein (Gp20) Cas_Cas4 PF01930.12 gi|345004202|ref|YP_004807055.1| - 8.9e-25 87.4 0.1 1e-24 87.3 0.1 1.0 1 0 0 1 1 1 1 Domain of unknown function DUF83 PDDEXK_1 PF12705.2 gi|345004202|ref|YP_004807055.1| - 1.4e-11 44.3 5.0 3.2e-10 39.8 0.2 2.1 1 1 1 2 2 2 2 PD-(D/E)XK nuclease superfamily DUF911 PF06023.7 gi|345004202|ref|YP_004807055.1| - 0.00016 20.9 0.1 0.00031 20.0 0.0 1.4 1 1 1 2 2 2 1 Archaeal protein of unknown function (DUF911) DEAD PF00270.24 gi|345004203|ref|YP_004807056.1| - 2.2e-13 50.0 0.0 3.7e-13 49.3 0.0 1.3 1 0 0 1 1 1 1 DEAD/DEAH box helicase ResIII PF04851.10 gi|345004203|ref|YP_004807056.1| - 5.7e-11 42.5 0.0 1.1e-10 41.6 0.0 1.5 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit AAA_19 PF13245.1 gi|345004203|ref|YP_004807056.1| - 0.00071 19.2 0.0 0.0047 16.6 0.0 2.2 2 0 0 2 2 2 1 Part of AAA domain Helicase_C PF00271.26 gi|345004203|ref|YP_004807056.1| - 0.018 14.8 0.0 0.056 13.3 0.0 1.9 1 0 0 1 1 1 0 Helicase conserved C-terminal domain DUF2276 PF10040.4 gi|345004207|ref|YP_004807060.1| - 6.9e-22 77.9 0.0 1e-21 77.4 0.0 1.3 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2276) HTH_IclR PF09339.5 gi|345004208|ref|YP_004807061.1| - 6e-05 22.5 0.0 0.00016 21.1 0.0 1.7 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.2 gi|345004208|ref|YP_004807061.1| - 0.00027 20.5 0.0 0.00059 19.4 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.2 gi|345004208|ref|YP_004807061.1| - 0.00035 20.3 0.0 0.00079 19.1 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|345004208|ref|YP_004807061.1| - 0.00051 19.3 0.0 0.00094 18.5 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR PF01047.17 gi|345004208|ref|YP_004807061.1| - 0.0046 16.6 0.1 0.01 15.5 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.7 gi|345004208|ref|YP_004807061.1| - 0.0073 15.9 0.1 0.016 14.8 0.0 1.6 1 0 0 1 1 1 1 HTH domain HTH_23 PF13384.1 gi|345004208|ref|YP_004807061.1| - 0.011 15.4 0.0 0.02 14.5 0.0 1.4 1 0 0 1 1 1 0 Homeodomain-like domain HTH_29 PF13551.1 gi|345004208|ref|YP_004807061.1| - 0.02 15.0 0.0 0.069 13.3 0.0 1.9 2 0 0 2 2 2 0 Winged helix-turn helix HTH_7 PF02796.10 gi|345004208|ref|YP_004807061.1| - 0.023 14.5 0.1 0.049 13.5 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase HTH_26 PF13443.1 gi|345004208|ref|YP_004807061.1| - 0.04 14.1 0.0 0.29 11.3 0.0 2.2 1 1 1 2 2 2 0 Cro/C1-type HTH DNA-binding domain HTH_40 PF14493.1 gi|345004208|ref|YP_004807061.1| - 0.045 13.9 0.2 0.3 11.3 0.0 2.2 2 1 1 3 3 2 0 Helix-turn-helix domain HTH_Crp_2 PF13545.1 gi|345004208|ref|YP_004807061.1| - 0.054 13.2 0.2 0.17 11.6 0.0 1.9 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain HTH_36 PF13730.1 gi|345004208|ref|YP_004807061.1| - 0.069 13.2 0.0 0.11 12.6 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_27 PF13463.1 gi|345004208|ref|YP_004807061.1| - 0.082 13.2 0.1 0.18 12.1 0.1 1.7 1 1 0 1 1 1 0 Winged helix DNA-binding domain HTH_38 PF13936.1 gi|345004208|ref|YP_004807061.1| - 0.11 12.0 0.2 0.26 10.8 0.1 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain Ribosomal_S10 PF00338.17 gi|345004209|ref|YP_004807062.1| - 1e-27 95.7 0.0 1.1e-27 95.6 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S10p/S20e GTP_EFTU PF00009.22 gi|345004210|ref|YP_004807063.1| - 9.4e-58 194.7 0.0 1.3e-57 194.2 0.0 1.1 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D3 PF03143.12 gi|345004210|ref|YP_004807063.1| - 3.4e-31 107.3 0.2 1.7e-30 105.0 0.1 2.0 2 0 0 2 2 2 1 Elongation factor Tu C-terminal domain GTP_EFTU_D2 PF03144.20 gi|345004210|ref|YP_004807063.1| - 5.3e-17 61.7 2.9 2.6e-16 59.4 1.0 2.6 2 0 0 2 2 2 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.18 gi|345004210|ref|YP_004807063.1| - 1.2e-07 31.6 0.0 2.4e-07 30.6 0.0 1.6 1 0 0 1 1 1 1 50S ribosome-binding GTPase Miro PF08477.8 gi|345004210|ref|YP_004807063.1| - 1.6e-05 25.3 0.1 0.00066 20.1 0.0 3.1 2 1 1 3 3 3 1 Miro-like protein GTP_EFTU_D4 PF14578.1 gi|345004210|ref|YP_004807063.1| - 0.00011 21.7 0.2 0.00034 20.1 0.1 1.8 1 0 0 1 1 1 1 Elongation factor Tu domain 4 Gtr1_RagA PF04670.7 gi|345004210|ref|YP_004807063.1| - 0.00053 19.2 0.1 0.039 13.0 0.0 2.3 2 0 0 2 2 2 1 Gtr1/RagA G protein conserved region Dynamin_N PF00350.18 gi|345004210|ref|YP_004807063.1| - 0.0033 17.2 0.1 1.5 8.5 0.0 2.5 1 1 1 2 2 2 2 Dynamin family Septin PF00735.13 gi|345004210|ref|YP_004807063.1| - 0.0063 15.5 0.0 0.013 14.5 0.0 1.4 1 0 0 1 1 1 1 Septin SRPRB PF09439.5 gi|345004210|ref|YP_004807063.1| - 0.011 15.0 0.0 0.3 10.2 0.0 2.3 1 1 0 1 1 1 0 Signal recognition particle receptor beta subunit FeoB_N PF02421.13 gi|345004210|ref|YP_004807063.1| - 0.016 14.4 0.0 0.23 10.7 0.0 2.4 2 1 0 2 2 2 0 Ferrous iron transport protein B Ras PF00071.17 gi|345004210|ref|YP_004807063.1| - 0.034 13.5 0.4 0.21 10.9 0.1 2.2 2 1 0 2 2 2 0 Ras family Homoserine_dh PF00742.14 gi|345004211|ref|YP_004807064.1| - 1.2e-46 158.6 0.2 1.7e-46 158.1 0.1 1.2 1 0 0 1 1 1 1 Homoserine dehydrogenase ELFV_dehydrog PF00208.16 gi|345004211|ref|YP_004807064.1| - 7.6e-07 28.9 0.2 2.2e-06 27.4 0.1 1.8 2 0 0 2 2 2 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase NAD_binding_3 PF03447.11 gi|345004211|ref|YP_004807064.1| - 3.8e-06 27.2 0.7 1e-05 25.9 0.5 1.8 1 1 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain NAD_binding_10 PF13460.1 gi|345004211|ref|YP_004807064.1| - 0.014 15.4 1.2 0.027 14.4 0.8 1.5 1 0 0 1 1 1 0 NADH(P)-binding 2-Hacid_dh_C PF02826.14 gi|345004211|ref|YP_004807064.1| - 0.034 13.2 0.1 0.057 12.5 0.1 1.3 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain TrkA_N PF02254.13 gi|345004211|ref|YP_004807064.1| - 0.056 13.4 0.2 0.22 11.5 0.1 2.1 1 1 0 1 1 1 0 TrkA-N domain 3HCDH_N PF02737.13 gi|345004211|ref|YP_004807064.1| - 0.096 12.3 0.2 0.16 11.5 0.1 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ACT PF01842.20 gi|345004212|ref|YP_004807065.1| - 0.00015 21.1 0.1 0.012 15.0 0.0 3.1 2 1 1 3 3 3 2 ACT domain GTP_EFTU PF00009.22 gi|345004213|ref|YP_004807066.1| - 2e-60 203.4 0.6 3.5e-60 202.6 0.4 1.4 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain EFG_IV PF03764.13 gi|345004213|ref|YP_004807066.1| - 4.1e-24 84.4 0.0 1.1e-23 83.1 0.0 1.8 1 0 0 1 1 1 1 Elongation factor G, domain IV EFG_C PF00679.19 gi|345004213|ref|YP_004807066.1| - 1.8e-23 82.1 0.0 2.1e-22 78.7 0.0 2.6 2 0 0 2 2 2 1 Elongation factor G C-terminus EFG_II PF14492.1 gi|345004213|ref|YP_004807066.1| - 3.6e-22 78.0 0.6 1.3e-21 76.1 0.4 2.1 1 0 0 1 1 1 1 Elongation Factor G, domain II GTP_EFTU_D2 PF03144.20 gi|345004213|ref|YP_004807066.1| - 3.7e-15 55.7 0.7 2.4e-14 53.1 0.5 2.6 1 0 0 1 1 1 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.18 gi|345004213|ref|YP_004807066.1| - 1.6e-05 24.8 0.6 4.5e-05 23.3 0.0 2.0 2 0 0 2 2 2 1 50S ribosome-binding GTPase SRPRB PF09439.5 gi|345004213|ref|YP_004807066.1| - 0.07 12.3 0.1 0.36 10.0 0.1 2.1 1 1 0 1 1 1 0 Signal recognition particle receptor beta subunit GSDH PF07995.6 gi|345004216|ref|YP_004807069.1| - 1.9e-67 227.6 0.0 2.8e-67 227.1 0.0 1.2 1 0 0 1 1 1 1 Glucose / Sorbosone dehydrogenase HAD_2 PF13419.1 gi|345004217|ref|YP_004807070.1| - 1.7e-30 106.5 0.0 2e-30 106.2 0.0 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|345004217|ref|YP_004807070.1| - 1.2e-13 50.5 0.0 3.1e-13 49.2 0.0 1.7 2 0 0 2 2 2 1 HAD-hyrolase-like Hydrolase PF00702.21 gi|345004217|ref|YP_004807070.1| - 1.7e-11 44.9 0.0 2.9e-11 44.2 0.0 1.4 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|345004217|ref|YP_004807070.1| - 6e-06 26.5 0.1 1.1e-05 25.6 0.1 1.5 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.1 gi|345004217|ref|YP_004807070.1| - 0.00087 19.1 0.0 0.0021 17.8 0.0 1.8 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Acid_PPase PF12689.2 gi|345004217|ref|YP_004807070.1| - 0.0086 15.7 0.0 2.9 7.4 0.0 2.2 2 0 0 2 2 2 2 Acid Phosphatase Aldolase_II PF00596.16 gi|345004218|ref|YP_004807071.1| - 2.2e-38 131.7 2.7 2.7e-38 131.4 1.9 1.1 1 0 0 1 1 1 1 Class II Aldolase and Adducin N-terminal domain Ribosomal_S7 PF00177.16 gi|345004220|ref|YP_004807073.1| - 2.1e-34 118.2 1.1 2.4e-34 118.0 0.8 1.0 1 0 0 1 1 1 1 Ribosomal protein S7p/S5e Ribosom_S12_S23 PF00164.20 gi|345004221|ref|YP_004807074.1| - 1.9e-41 140.3 0.4 2.2e-41 140.1 0.3 1.0 1 0 0 1 1 1 1 Ribosomal protein S12/S23 KH_2 PF07650.12 gi|345004222|ref|YP_004807075.1| - 4.5e-09 35.7 0.0 2.8e-05 23.5 0.0 2.1 2 0 0 2 2 2 2 KH domain KH_5 PF13184.1 gi|345004222|ref|YP_004807075.1| - 1.7e-08 34.1 0.0 4.3e-08 32.8 0.0 1.7 2 0 0 2 2 2 1 NusA-like KH domain KH_1 PF00013.24 gi|345004222|ref|YP_004807075.1| - 0.00014 21.4 0.0 0.0023 17.5 0.0 2.2 2 0 0 2 2 2 1 KH domain RNA_pol_Rpb1_5 PF04998.12 gi|345004223|ref|YP_004807076.1| - 3.7e-46 157.6 1.0 4.9e-46 157.2 0.7 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 5 FlgN PF05130.7 gi|345004223|ref|YP_004807076.1| - 0.21 11.8 1.9 2 8.6 0.2 2.5 2 0 0 2 2 2 0 FlgN protein Virulence_fact PF13769.1 gi|345004223|ref|YP_004807076.1| - 0.22 11.4 1.5 1.6 8.6 0.3 2.4 2 0 0 2 2 2 0 Virulence factor RNA_pol_Rpb1_1 PF04997.7 gi|345004224|ref|YP_004807077.1| - 7.6e-87 291.7 0.0 1.2e-86 291.1 0.0 1.3 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 1 RNA_pol_Rpb1_2 PF00623.15 gi|345004224|ref|YP_004807077.1| - 2.2e-64 216.3 0.1 4.1e-64 215.5 0.1 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 2 RNA_pol_Rpb1_4 PF05000.12 gi|345004224|ref|YP_004807077.1| - 1.6e-31 108.2 0.0 3.7e-31 107.0 0.0 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 4 RNA_pol_Rpb1_3 PF04983.13 gi|345004224|ref|YP_004807077.1| - 5.7e-31 107.3 0.0 1e-30 106.5 0.0 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 3 RNA_pol_Rpb1_5 PF04998.12 gi|345004224|ref|YP_004807077.1| - 2.6e-29 102.3 0.0 5.3e-29 101.3 0.0 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 5 HTH_3 PF01381.17 gi|345004224|ref|YP_004807077.1| - 1.1e-05 25.1 0.0 3.4e-05 23.6 0.0 1.9 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.1 gi|345004224|ref|YP_004807077.1| - 0.00013 22.1 0.0 0.00054 20.0 0.0 2.2 1 1 0 1 1 1 1 Helix-turn-helix domain RNA_pol_Rpb2_6 PF00562.23 gi|345004225|ref|YP_004807078.1| - 1.2e-122 409.4 0.0 2.2e-122 408.5 0.0 1.4 2 0 0 2 2 2 1 RNA polymerase Rpb2, domain 6 RNA_pol_Rpb2_4 PF04566.8 gi|345004225|ref|YP_004807078.1| - 3.1e-25 87.7 0.4 3.1e-25 87.7 0.3 2.1 3 0 0 3 3 3 1 RNA polymerase Rpb2, domain 4 RNA_pol_Rpb2_7 PF04560.15 gi|345004225|ref|YP_004807078.1| - 4.8e-25 87.6 0.0 8.8e-25 86.7 0.0 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 7 RNA_pol_Rpb2_5 PF04567.12 gi|345004225|ref|YP_004807078.1| - 1.1e-12 47.7 1.3 3e-12 46.3 0.9 1.8 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 5 RNA_pol_Rpb2_1 PF04563.10 gi|345004226|ref|YP_004807079.1| - 6.7e-54 181.8 0.0 8.2e-54 181.6 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase beta subunit RNA_pol_Rpb2_2 PF04561.9 gi|345004226|ref|YP_004807079.1| - 3.2e-26 91.9 0.0 4.8e-26 91.3 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 2 RNA_pol_Rpb2_3 PF04565.11 gi|345004226|ref|YP_004807079.1| - 4.6e-23 80.7 0.0 8.6e-23 79.8 0.0 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 3 NTPase_I-T PF01931.13 gi|345004226|ref|YP_004807079.1| - 0.13 11.9 0.0 0.35 10.5 0.0 1.7 1 0 0 1 1 1 0 Protein of unknown function DUF84 RNA_pol_Rpb5_C PF01191.14 gi|345004227|ref|YP_004807080.1| - 3.6e-26 90.5 0.8 4e-26 90.4 0.5 1.0 1 0 0 1 1 1 1 RNA polymerase Rpb5, C-terminal domain DUF3006 PF11213.3 gi|345004227|ref|YP_004807080.1| - 0.065 12.9 0.4 1.6 8.5 0.3 2.2 1 1 0 1 1 1 0 Protein of unknown function (DUF3006) DHFR_1 PF00186.14 gi|345004228|ref|YP_004807081.1| - 1.4e-37 128.7 0.0 1.6e-37 128.5 0.0 1.0 1 0 0 1 1 1 1 Dihydrofolate reductase TPP_enzyme_M PF00205.17 gi|345004228|ref|YP_004807081.1| - 0.057 13.1 0.0 0.12 12.1 0.0 1.5 2 0 0 2 2 2 0 Thiamine pyrophosphate enzyme, central domain Glyco_trans_2_3 PF13632.1 gi|345004230|ref|YP_004807083.1| - 1.7e-13 50.7 1.7 3.1e-13 49.8 1.2 1.5 1 0 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_tranf_2_3 PF13641.1 gi|345004230|ref|YP_004807083.1| - 3.2e-10 40.2 0.3 6.4e-10 39.2 0.2 1.4 1 1 0 1 1 1 1 Glycosyltransferase like family 2 AAA_10 PF12846.2 gi|345004231|ref|YP_004807084.1| - 4.9e-17 62.3 0.0 1.1e-10 41.4 0.0 2.1 1 1 0 2 2 2 2 AAA-like domain FtsK_SpoIIIE PF01580.13 gi|345004231|ref|YP_004807084.1| - 1.2e-05 24.9 0.5 0.071 12.5 0.0 2.6 3 0 0 3 3 3 2 FtsK/SpoIIIE family DUF87 PF01935.12 gi|345004231|ref|YP_004807084.1| - 1.3e-05 25.1 0.0 5.1e-05 23.2 0.0 1.8 1 1 0 2 2 2 1 Domain of unknown function DUF87 TrwB_AAD_bind PF10412.4 gi|345004231|ref|YP_004807084.1| - 5.7e-05 21.8 0.0 0.16 10.5 0.0 2.2 2 0 0 2 2 2 2 Type IV secretion-system coupling protein DNA-binding domain DUF853 PF05872.7 gi|345004231|ref|YP_004807084.1| - 0.001 17.5 0.1 0.46 8.7 0.1 2.1 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) AAA_22 PF13401.1 gi|345004231|ref|YP_004807084.1| - 0.014 15.4 0.0 12 6.0 0.0 3.0 2 1 1 3 3 3 0 AAA domain Zeta_toxin PF06414.7 gi|345004231|ref|YP_004807084.1| - 0.015 14.4 0.2 0.026 13.6 0.1 1.3 1 0 0 1 1 1 0 Zeta toxin AAA_16 PF13191.1 gi|345004231|ref|YP_004807084.1| - 0.015 15.3 4.7 0.077 12.9 0.0 2.7 2 1 0 2 2 2 0 AAA ATPase domain AAA_30 PF13604.1 gi|345004231|ref|YP_004807084.1| - 0.3 10.6 6.2 0.5 9.9 2.3 2.7 2 2 1 3 3 3 0 AAA domain Big_1 PF02369.11 gi|345004232|ref|YP_004807085.1| - 7.1e-06 25.8 1.2 1.1e-05 25.2 0.8 1.4 1 0 0 1 1 1 1 Bacterial Ig-like domain (group 1) CarboxypepD_reg PF13620.1 gi|345004232|ref|YP_004807085.1| - 1.1e-05 25.4 1.4 1.9e-05 24.6 0.9 1.5 1 0 0 1 1 1 1 Carboxypeptidase regulatory-like domain YtkA PF13115.1 gi|345004232|ref|YP_004807085.1| - 0.00019 21.7 1.2 0.00034 20.9 0.9 1.5 1 1 0 1 1 1 1 YtkA-like DUF824 PF05688.6 gi|345004232|ref|YP_004807085.1| - 0.0013 18.3 0.1 0.0024 17.4 0.1 1.5 1 0 0 1 1 1 1 Salmonella repeat of unknown function (DUF824) DUF4480 PF13715.1 gi|345004232|ref|YP_004807085.1| - 0.0049 16.8 0.3 0.0077 16.2 0.2 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4480) DUF3720 PF12517.3 gi|345004232|ref|YP_004807085.1| - 0.12 13.0 0.4 0.12 13.0 0.3 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF3720) DUF4198 PF10670.4 gi|345004232|ref|YP_004807085.1| - 0.18 11.7 0.9 0.25 11.3 0.6 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4198) PCMT PF01135.14 gi|345004233|ref|YP_004807086.1| - 7.9e-30 103.9 0.0 9.5e-30 103.6 0.0 1.1 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_18 PF12847.2 gi|345004233|ref|YP_004807086.1| - 1.3e-07 32.1 0.0 2.2e-07 31.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|345004233|ref|YP_004807086.1| - 5e-06 26.1 0.0 6.5e-06 25.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|345004233|ref|YP_004807086.1| - 0.00025 20.4 0.0 0.00038 19.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_26 PF13659.1 gi|345004233|ref|YP_004807086.1| - 0.00039 20.4 0.3 0.00084 19.3 0.2 1.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|345004233|ref|YP_004807086.1| - 0.0026 18.2 0.0 0.0044 17.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.8 gi|345004233|ref|YP_004807086.1| - 0.0068 15.5 0.0 0.0096 15.0 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_12 PF08242.7 gi|345004233|ref|YP_004807086.1| - 0.0083 16.5 0.0 0.016 15.6 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|345004233|ref|YP_004807086.1| - 0.011 15.5 0.0 0.02 14.6 0.0 1.5 1 1 0 1 1 1 0 Methyltransferase domain UPF0020 PF01170.13 gi|345004233|ref|YP_004807086.1| - 0.13 11.8 0.0 0.18 11.3 0.0 1.3 1 0 0 1 1 1 0 Putative RNA methylase family UPF0020 Methyltransf_23 PF13489.1 gi|345004234|ref|YP_004807087.1| - 0.00031 20.4 0.0 0.00097 18.8 0.0 1.8 1 1 0 1 1 1 1 Methyltransferase domain P_C PF06640.6 gi|345004234|ref|YP_004807087.1| - 0.04 13.9 0.9 0.08 12.9 0.0 1.8 2 0 0 2 2 2 0 P protein C-terminus Methyltransf_11 PF08241.7 gi|345004234|ref|YP_004807087.1| - 0.044 14.2 0.0 0.16 12.4 0.0 2.0 1 1 1 2 2 2 0 Methyltransferase domain PCMT PF01135.14 gi|345004235|ref|YP_004807088.1| - 1.9e-56 190.9 0.0 2.1e-56 190.7 0.0 1.0 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_18 PF12847.2 gi|345004235|ref|YP_004807088.1| - 6.2e-11 42.8 0.0 9.6e-11 42.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|345004235|ref|YP_004807088.1| - 2.9e-08 33.7 0.0 4.5e-08 33.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|345004235|ref|YP_004807088.1| - 5.4e-08 32.5 0.0 7e-08 32.2 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain GCD14 PF08704.5 gi|345004235|ref|YP_004807088.1| - 4.4e-05 23.1 0.0 5.7e-05 22.7 0.0 1.1 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit RrnaAD PF00398.15 gi|345004235|ref|YP_004807088.1| - 4.6e-05 22.5 0.0 8.3e-05 21.7 0.0 1.3 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase CMAS PF02353.15 gi|345004235|ref|YP_004807088.1| - 0.00016 20.8 0.0 0.00023 20.3 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Fibrillarin PF01269.12 gi|345004235|ref|YP_004807088.1| - 0.002 17.1 0.0 0.0027 16.6 0.0 1.1 1 0 0 1 1 1 1 Fibrillarin Methyltransf_11 PF08241.7 gi|345004235|ref|YP_004807088.1| - 0.0043 17.5 0.0 0.0067 16.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|345004235|ref|YP_004807088.1| - 0.01 16.1 0.0 0.019 15.3 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain MTS PF05175.9 gi|345004235|ref|YP_004807088.1| - 0.013 14.8 0.0 0.02 14.2 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase small domain Methyltransf_24 PF13578.1 gi|345004235|ref|YP_004807088.1| - 0.031 15.1 0.0 0.05 14.4 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_32 PF13679.1 gi|345004235|ref|YP_004807088.1| - 0.046 13.4 0.0 0.059 13.0 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain MarR PF01047.17 gi|345004235|ref|YP_004807088.1| - 0.053 13.2 0.2 0.29 10.8 0.1 2.1 2 0 0 2 2 2 0 MarR family Methyltransf_3 PF01596.12 gi|345004235|ref|YP_004807088.1| - 0.074 12.0 0.0 0.1 11.6 0.0 1.2 1 0 0 1 1 1 0 O-methyltransferase Methyltransf_12 PF08242.7 gi|345004235|ref|YP_004807088.1| - 0.11 13.0 0.0 0.16 12.4 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain DUF938 PF06080.7 gi|345004235|ref|YP_004807088.1| - 0.11 11.9 0.0 0.15 11.6 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF938) DHH PF01368.15 gi|345004236|ref|YP_004807089.1| - 3.2e-16 59.2 0.0 4.8e-16 58.7 0.0 1.3 1 0 0 1 1 1 1 DHH family DHHA1 PF02272.14 gi|345004236|ref|YP_004807089.1| - 7.1e-10 38.4 1.9 2.2e-09 36.8 1.1 2.0 2 0 0 2 2 2 1 DHHA1 domain Aldo_ket_red PF00248.16 gi|345004237|ref|YP_004807090.1| - 9.6e-35 119.7 0.0 6.2e-34 117.1 0.0 1.9 1 1 0 1 1 1 1 Aldo/keto reductase family PPDK_N PF01326.14 gi|345004238|ref|YP_004807091.1| - 9.4e-109 363.4 2.9 1.6e-108 362.6 2.0 1.3 1 0 0 1 1 1 1 Pyruvate phosphate dikinase, PEP/pyruvate binding domain PEP-utilizers_C PF02896.13 gi|345004238|ref|YP_004807091.1| - 1.3e-77 260.5 0.1 2.1e-77 259.9 0.1 1.2 1 0 0 1 1 1 1 PEP-utilising enzyme, TIM barrel domain PEP-utilizers PF00391.18 gi|345004238|ref|YP_004807091.1| - 1.6e-27 94.8 2.6 2.5e-27 94.2 0.7 2.3 2 0 0 2 2 2 1 PEP-utilising enzyme, mobile domain PEP-utilisers_N PF05524.8 gi|345004238|ref|YP_004807091.1| - 0.014 15.1 1.6 5.4 6.8 0.0 3.2 3 0 0 3 3 3 0 PEP-utilising enzyme, N-terminal Aminotran_5 PF00266.14 gi|345004239|ref|YP_004807092.1| - 1.9e-153 510.6 0.0 2.3e-153 510.3 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-V NifU_N PF01592.11 gi|345004239|ref|YP_004807092.1| - 3.3e-13 49.6 0.0 8.7e-13 48.3 0.0 1.7 2 0 0 2 2 2 1 NifU-like N terminal domain DegT_DnrJ_EryC1 PF01041.12 gi|345004239|ref|YP_004807092.1| - 6.2e-12 45.2 1.0 1.1e-11 44.4 0.7 1.3 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.16 gi|345004239|ref|YP_004807092.1| - 1.5e-07 30.9 0.1 2.3e-07 30.2 0.1 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase Cys_Met_Meta_PP PF01053.15 gi|345004239|ref|YP_004807092.1| - 0.00037 18.8 0.0 0.00057 18.2 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Pyridoxal_deC PF00282.14 gi|345004239|ref|YP_004807092.1| - 0.024 13.0 0.0 0.13 10.6 0.0 1.9 2 0 0 2 2 2 0 Pyridoxal-dependent decarboxylase conserved domain GATase PF00117.23 gi|345004240|ref|YP_004807093.1| - 1.2e-31 109.6 0.0 1.5e-31 109.3 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I SNO PF01174.14 gi|345004240|ref|YP_004807093.1| - 4.6e-08 32.9 0.0 1.4e-07 31.3 0.0 1.6 1 1 0 1 1 1 1 SNO glutamine amidotransferase family GATase_3 PF07685.9 gi|345004240|ref|YP_004807093.1| - 1.5e-06 27.9 0.0 3.4e-06 26.7 0.0 1.7 1 1 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain Peptidase_C26 PF07722.8 gi|345004240|ref|YP_004807093.1| - 0.00052 19.5 0.0 0.088 12.2 0.0 2.2 2 0 0 2 2 2 2 Peptidase C26 DUF4066 PF13278.1 gi|345004240|ref|YP_004807093.1| - 0.036 13.3 0.1 0.068 12.4 0.0 1.4 1 0 0 1 1 1 0 Putative amidotransferase DSBA PF01323.15 gi|345004241|ref|YP_004807094.1| - 1.3e-38 132.4 0.0 1.5e-38 132.3 0.0 1.0 1 0 0 1 1 1 1 DSBA-like thioredoxin domain Thioredoxin_4 PF13462.1 gi|345004241|ref|YP_004807094.1| - 3.1e-10 40.3 0.2 6.9e-08 32.6 0.0 2.3 2 1 0 2 2 2 2 Thioredoxin Thioredoxin_2 PF13098.1 gi|345004241|ref|YP_004807094.1| - 4.5e-06 26.8 0.4 0.00012 22.2 0.3 2.2 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_5 PF13743.1 gi|345004241|ref|YP_004807094.1| - 1.5e-05 24.6 0.0 6.9e-05 22.4 0.0 1.9 2 0 0 2 2 2 1 Thioredoxin Thioredoxin_3 PF13192.1 gi|345004241|ref|YP_004807094.1| - 0.12 12.1 0.0 0.88 9.4 0.0 2.1 2 0 0 2 2 2 0 Thioredoxin domain CarboxypepD_reg PF13620.1 gi|345004242|ref|YP_004807095.1| - 3.8e-22 78.1 32.3 1.7e-09 37.6 2.0 4.4 4 0 0 4 4 4 4 Carboxypeptidase regulatory-like domain DUF4480 PF13715.1 gi|345004242|ref|YP_004807095.1| - 7.1e-15 54.8 14.3 3.3e-06 27.0 0.2 4.4 3 1 1 4 4 4 4 Domain of unknown function (DUF4480) PEGA PF08308.6 gi|345004242|ref|YP_004807095.1| - 2.1e-09 37.0 7.3 0.0014 18.3 0.2 4.1 3 1 0 3 3 3 3 PEGA domain Cna_B PF05738.8 gi|345004242|ref|YP_004807095.1| - 1.9e-06 27.5 9.6 0.022 14.5 0.1 3.9 4 0 0 4 4 4 3 Cna protein B-type domain Big_1 PF02369.11 gi|345004242|ref|YP_004807095.1| - 3.5e-05 23.6 31.8 0.26 11.2 1.5 4.7 3 2 1 4 4 4 4 Bacterial Ig-like domain (group 1) DUF2012 PF09430.5 gi|345004242|ref|YP_004807095.1| - 5.2e-05 23.0 1.3 0.0014 18.4 0.1 3.2 3 1 0 3 3 3 1 Protein of unknown function (DUF2012) DUF4198 PF10670.4 gi|345004242|ref|YP_004807095.1| - 0.00046 20.2 8.4 0.74 9.7 0.1 3.8 3 1 1 4 4 4 2 Domain of unknown function (DUF4198) BiPBP_C PF06832.7 gi|345004242|ref|YP_004807095.1| - 0.0016 18.3 0.1 0.21 11.5 0.0 3.3 3 1 0 3 3 3 1 Penicillin-Binding Protein C-terminus Family Cupredoxin_1 PF13473.1 gi|345004242|ref|YP_004807095.1| - 0.0043 16.9 2.5 0.66 9.8 0.1 4.3 2 2 0 2 2 2 1 Cupredoxin-like domain DUF1312 PF07009.6 gi|345004242|ref|YP_004807095.1| - 0.005 16.6 0.0 0.026 14.3 0.0 2.1 1 1 1 2 2 2 1 Protein of unknown function (DUF1312) DUF824 PF05688.6 gi|345004242|ref|YP_004807095.1| - 0.0097 15.5 7.7 7.1 6.3 0.2 4.9 5 0 0 5 5 4 1 Salmonella repeat of unknown function (DUF824) fn3_3 PF14686.1 gi|345004242|ref|YP_004807095.1| - 0.038 14.1 4.7 0.055 13.5 0.3 3.0 3 1 0 3 3 3 0 Polysaccharide lyase family 4, domain II FlgD_ig PF13860.1 gi|345004242|ref|YP_004807095.1| - 0.23 11.2 0.1 0.23 11.2 0.1 3.9 4 2 0 4 4 4 0 FlgD Ig-like domain FixH PF05751.6 gi|345004242|ref|YP_004807095.1| - 0.37 10.5 2.8 38 4.0 0.2 3.7 4 0 0 4 4 4 0 FixH MutS_V PF00488.16 gi|345004243|ref|YP_004807096.1| - 4e-99 330.8 0.0 7e-99 329.9 0.0 1.4 1 0 0 1 1 1 1 MutS domain V MutS_III PF05192.13 gi|345004243|ref|YP_004807096.1| - 2.1e-41 141.9 3.4 2.1e-41 141.9 2.3 2.3 3 0 0 3 3 3 1 MutS domain III MutS_I PF01624.15 gi|345004243|ref|YP_004807096.1| - 2.2e-26 92.1 0.0 4.6e-26 91.0 0.0 1.6 1 0 0 1 1 1 1 MutS domain I MutS_II PF05188.12 gi|345004243|ref|YP_004807096.1| - 1.5e-22 80.1 0.0 6.3e-22 78.1 0.0 2.2 1 1 0 1 1 1 1 MutS domain II MutS_IV PF05190.13 gi|345004243|ref|YP_004807096.1| - 4e-21 74.9 0.6 7.8e-21 74.0 0.4 1.5 1 0 0 1 1 1 1 MutS family domain IV AAA_29 PF13555.1 gi|345004243|ref|YP_004807096.1| - 0.0068 15.9 0.0 0.015 14.8 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_14 PF13173.1 gi|345004243|ref|YP_004807096.1| - 0.05 13.5 0.0 0.12 12.2 0.0 1.6 1 0 0 1 1 1 0 AAA domain Herpes_UL6 PF01763.11 gi|345004243|ref|YP_004807096.1| - 0.19 9.8 0.2 0.28 9.3 0.1 1.2 1 0 0 1 1 1 0 Herpesvirus UL6 like NUDIX PF00293.23 gi|345004244|ref|YP_004807097.1| - 1.8e-09 37.3 0.1 2e-09 37.1 0.1 1.1 1 0 0 1 1 1 1 NUDIX domain NUDIX_2 PF13869.1 gi|345004244|ref|YP_004807097.1| - 0.0003 20.1 0.0 0.00071 18.9 0.0 1.6 2 0 0 2 2 2 1 Nucleotide hydrolase MutL_C PF08676.6 gi|345004245|ref|YP_004807098.1| - 6e-37 126.4 0.0 9.3e-37 125.8 0.0 1.3 1 0 0 1 1 1 1 MutL C terminal dimerisation domain DNA_mis_repair PF01119.14 gi|345004245|ref|YP_004807098.1| - 5e-34 116.3 0.0 7.9e-34 115.6 0.0 1.3 1 0 0 1 1 1 1 DNA mismatch repair protein, C-terminal domain HATPase_c_3 PF13589.1 gi|345004245|ref|YP_004807098.1| - 1.9e-12 47.0 1.5 2.6e-12 46.5 0.1 2.0 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c PF02518.21 gi|345004245|ref|YP_004807098.1| - 1.5e-09 37.5 0.6 4.5e-09 36.0 0.1 2.1 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Imm29 PF15575.1 gi|345004246|ref|YP_004807099.1| - 4.5e-08 32.9 1.1 8.3e-08 32.1 0.7 1.5 1 1 0 1 1 1 1 Immunity protein 29 DNase_NucA_NucB PF14040.1 gi|345004246|ref|YP_004807099.1| - 0.0045 17.1 1.6 0.008 16.3 0.0 2.0 2 0 0 2 2 2 1 Deoxyribonuclease NucA/NucB IGF2_C PF08365.6 gi|345004247|ref|YP_004807100.1| - 0.95 9.2 3.7 4.1 7.2 0.3 2.2 2 0 0 2 2 2 0 Insulin-like growth factor II E-peptide TPR_1 PF00515.23 gi|345004248|ref|YP_004807101.1| - 2.7e-22 77.3 4.4 1.4e-08 33.9 0.1 4.4 4 0 0 4 4 4 4 Tetratricopeptide repeat TPR_11 PF13414.1 gi|345004248|ref|YP_004807101.1| - 3.5e-22 77.8 17.0 4e-12 45.6 2.4 3.2 1 1 1 3 3 3 3 TPR repeat TPR_2 PF07719.12 gi|345004248|ref|YP_004807101.1| - 2.1e-16 58.4 15.1 1e-06 28.2 0.3 4.7 5 0 0 5 5 5 4 Tetratricopeptide repeat TPR_16 PF13432.1 gi|345004248|ref|YP_004807101.1| - 3.8e-14 52.8 14.3 6.2e-08 33.1 1.1 4.1 2 2 2 4 4 4 4 Tetratricopeptide repeat TPR_12 PF13424.1 gi|345004248|ref|YP_004807101.1| - 7.2e-12 45.0 14.3 4.6e-07 29.6 0.7 3.5 1 1 1 3 3 3 3 Tetratricopeptide repeat TPR_8 PF13181.1 gi|345004248|ref|YP_004807101.1| - 1e-11 43.7 0.7 0.00069 19.2 0.2 4.4 4 0 0 4 4 4 3 Tetratricopeptide repeat TPR_14 PF13428.1 gi|345004248|ref|YP_004807101.1| - 2.8e-11 43.0 16.7 0.0013 19.1 0.3 5.1 1 1 4 5 5 5 4 Tetratricopeptide repeat TPR_17 PF13431.1 gi|345004248|ref|YP_004807101.1| - 1.8e-10 40.1 2.6 0.00034 20.5 0.0 4.3 4 0 0 4 4 4 2 Tetratricopeptide repeat TPR_7 PF13176.1 gi|345004248|ref|YP_004807101.1| - 3.6e-08 32.6 11.7 9.7e-06 25.0 0.2 4.8 5 0 0 5 5 5 2 Tetratricopeptide repeat TPR_9 PF13371.1 gi|345004248|ref|YP_004807101.1| - 2.2e-07 30.6 7.7 0.033 14.0 0.0 3.6 1 1 2 3 3 3 3 Tetratricopeptide repeat TPR_19 PF14559.1 gi|345004248|ref|YP_004807101.1| - 1.2e-05 25.5 8.0 0.0019 18.4 1.0 3.7 1 1 4 5 5 5 3 Tetratricopeptide repeat TPR_6 PF13174.1 gi|345004248|ref|YP_004807101.1| - 5.8e-05 23.2 5.0 7.4 7.2 0.0 4.7 5 0 0 5 5 4 0 Tetratricopeptide repeat Apc3 PF12895.2 gi|345004248|ref|YP_004807101.1| - 0.0001 22.3 0.6 0.0056 16.7 0.7 2.4 1 1 2 3 3 3 2 Anaphase-promoting complex, cyclosome, subunit 3 TPR_10 PF13374.1 gi|345004248|ref|YP_004807101.1| - 0.0051 16.7 17.4 0.32 10.9 0.4 4.4 4 1 0 4 4 4 2 Tetratricopeptide repeat Apc5 PF12862.2 gi|345004248|ref|YP_004807101.1| - 0.018 14.8 2.1 0.58 10.0 0.3 2.7 1 1 1 2 2 2 0 Anaphase-promoting complex subunit 5 TPR_4 PF07721.9 gi|345004248|ref|YP_004807101.1| - 0.02 15.2 12.7 0.13 12.8 0.3 4.9 5 1 0 5 5 5 0 Tetratricopeptide repeat DUF3856 PF12968.2 gi|345004248|ref|YP_004807101.1| - 0.025 14.3 12.1 3.2 7.5 0.1 3.6 1 1 2 3 3 3 0 Domain of Unknown Function (DUF3856) TPR_5 PF12688.2 gi|345004248|ref|YP_004807101.1| - 0.27 11.2 4.0 0.99 9.4 0.2 2.5 1 1 1 2 2 2 0 Tetratrico peptide repeat Fis1_TPR_C PF14853.1 gi|345004248|ref|YP_004807101.1| - 0.28 11.0 2.0 18 5.3 0.0 3.1 3 0 0 3 3 3 0 Fis1 C-terminal tetratricopeptide repeat TPR_21 PF09976.4 gi|345004248|ref|YP_004807101.1| - 0.29 11.0 7.7 0.067 13.1 2.1 2.0 2 0 0 2 2 2 0 Tetratricopeptide repeat DUF424 PF04242.8 gi|345004249|ref|YP_004807102.1| - 7.2e-24 83.6 0.1 8.1e-24 83.4 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF424) Aminotran_5 PF00266.14 gi|345004250|ref|YP_004807103.1| - 2.1e-150 500.6 0.0 2.4e-150 500.4 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.12 gi|345004250|ref|YP_004807103.1| - 2.8e-11 43.0 0.1 4.1e-11 42.5 0.1 1.3 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.16 gi|345004250|ref|YP_004807103.1| - 8.2e-08 31.7 0.0 1.1e-07 31.3 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase Pyridoxal_deC PF00282.14 gi|345004250|ref|YP_004807103.1| - 1.9e-05 23.2 0.0 5.2e-05 21.8 0.0 1.6 2 0 0 2 2 2 1 Pyridoxal-dependent decarboxylase conserved domain Cys_Met_Meta_PP PF01053.15 gi|345004250|ref|YP_004807103.1| - 2.3e-05 22.8 0.0 4.5e-05 21.9 0.0 1.4 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme SelA PF03841.8 gi|345004250|ref|YP_004807103.1| - 9.3e-05 21.3 0.0 0.00021 20.1 0.0 1.4 1 1 0 1 1 1 1 L-seryl-tRNA selenium transferase HAUS5 PF14817.1 gi|345004250|ref|YP_004807103.1| - 0.0096 14.5 0.1 0.013 14.1 0.1 1.1 1 0 0 1 1 1 1 HAUS augmin-like complex subunit 5 YPEB PF14620.1 gi|345004250|ref|YP_004807103.1| - 0.023 13.7 0.4 0.051 12.5 0.2 1.6 2 0 0 2 2 2 0 YpeB sporulation NifU_N PF01592.11 gi|345004251|ref|YP_004807104.1| - 1.1e-26 93.2 0.0 1.3e-26 93.0 0.0 1.0 1 0 0 1 1 1 1 NifU-like N terminal domain DUF2899 PF11449.3 gi|345004252|ref|YP_004807105.1| - 1.8e-69 234.2 15.2 1.9e-64 217.6 9.0 2.6 1 1 1 2 2 2 2 Protein of unknown function (DUF2899) Usp PF00582.21 gi|345004253|ref|YP_004807106.1| - 2e-35 122.0 1.4 2.3e-35 121.8 1.0 1.0 1 0 0 1 1 1 1 Universal stress protein family FR47 PF08445.5 gi|345004253|ref|YP_004807106.1| - 0.0044 16.7 0.1 0.0091 15.7 0.1 1.5 1 0 0 1 1 1 1 FR47-like protein DNA_photolyase PF00875.13 gi|345004253|ref|YP_004807106.1| - 0.0054 16.4 0.0 0.0079 15.9 0.0 1.2 1 0 0 1 1 1 1 DNA photolyase CheX PF13690.1 gi|345004254|ref|YP_004807107.1| - 0.061 13.1 0.0 0.95 9.3 0.0 2.4 2 0 0 2 2 2 0 Chemotaxis phosphatase CheX HTH_20 PF12840.2 gi|345004255|ref|YP_004807108.1| - 7.5e-09 35.2 0.0 1.2e-08 34.6 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|345004255|ref|YP_004807108.1| - 7.4e-05 22.0 0.3 0.00017 20.9 0.0 1.9 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding TrmB PF01978.14 gi|345004255|ref|YP_004807108.1| - 0.00017 21.2 0.0 0.00035 20.1 0.0 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_AsnC-type PF13404.1 gi|345004255|ref|YP_004807108.1| - 0.0011 18.4 1.6 0.0039 16.6 0.0 2.5 3 0 0 3 3 3 1 AsnC-type helix-turn-helix domain HTH_IclR PF09339.5 gi|345004255|ref|YP_004807108.1| - 0.0013 18.2 0.0 0.0026 17.3 0.0 1.5 1 1 0 1 1 1 1 IclR helix-turn-helix domain HTH_11 PF08279.7 gi|345004255|ref|YP_004807108.1| - 0.0032 17.0 0.0 0.0069 16.0 0.0 1.6 1 0 0 1 1 1 1 HTH domain HTH_23 PF13384.1 gi|345004255|ref|YP_004807108.1| - 0.0057 16.2 0.0 0.013 15.1 0.0 1.6 1 0 0 1 1 1 1 Homeodomain-like domain IncA PF04156.9 gi|345004255|ref|YP_004807108.1| - 0.037 13.6 1.0 0.042 13.4 0.7 1.0 1 0 0 1 1 1 0 IncA protein MarR_2 PF12802.2 gi|345004255|ref|YP_004807108.1| - 0.041 13.5 0.0 0.064 12.9 0.0 1.3 1 0 0 1 1 1 0 MarR family HTH_Tnp_1_2 PF13022.1 gi|345004255|ref|YP_004807108.1| - 0.067 12.9 0.0 0.13 12.0 0.0 1.4 1 1 0 1 1 1 0 Helix-turn-helix of insertion element transposase HTH_28 PF13518.1 gi|345004255|ref|YP_004807108.1| - 0.11 12.4 0.1 0.26 11.3 0.0 1.6 2 0 0 2 2 2 0 Helix-turn-helix domain KaiC PF06745.8 gi|345004256|ref|YP_004807109.1| - 3.8e-51 173.4 0.1 4.3e-51 173.2 0.1 1.0 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.1 gi|345004256|ref|YP_004807109.1| - 1.9e-10 40.4 0.0 2.8e-10 39.9 0.0 1.2 1 0 0 1 1 1 1 AAA domain DUF2075 PF09848.4 gi|345004256|ref|YP_004807109.1| - 0.00017 20.7 0.0 0.0002 20.4 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) AAA_24 PF13479.1 gi|345004256|ref|YP_004807109.1| - 0.00022 20.8 0.1 0.00075 19.1 0.0 1.7 2 0 0 2 2 2 1 AAA domain GvpD PF07088.6 gi|345004256|ref|YP_004807109.1| - 0.00092 17.6 0.1 0.0013 17.1 0.0 1.5 1 1 0 1 1 1 1 GvpD gas vesicle protein DnaB_C PF03796.10 gi|345004256|ref|YP_004807109.1| - 0.0049 15.7 0.0 0.0074 15.1 0.0 1.2 1 0 0 1 1 1 1 DnaB-like helicase C terminal domain AAA_19 PF13245.1 gi|345004256|ref|YP_004807109.1| - 0.016 14.9 0.0 0.028 14.1 0.0 1.4 1 0 0 1 1 1 0 Part of AAA domain T2SE PF00437.15 gi|345004256|ref|YP_004807109.1| - 0.056 12.3 0.0 0.11 11.4 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein DUF3764 PF12594.3 gi|345004256|ref|YP_004807109.1| - 0.12 12.0 0.0 0.26 11.0 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3764) AAA_16 PF13191.1 gi|345004256|ref|YP_004807109.1| - 0.15 12.0 0.4 0.37 10.7 0.3 1.8 1 1 0 1 1 1 0 AAA ATPase domain Flocculin PF00624.13 gi|345004256|ref|YP_004807109.1| - 0.22 11.4 0.8 0.44 10.4 0.5 1.5 1 0 0 1 1 1 0 Flocculin repeat DHHA1 PF02272.14 gi|345004257|ref|YP_004807110.1| - 2.3e-14 52.8 3.0 5e-14 51.7 2.1 1.6 1 0 0 1 1 1 1 DHHA1 domain DHH PF01368.15 gi|345004257|ref|YP_004807110.1| - 1.4e-10 41.0 0.0 2.2e-10 40.3 0.0 1.3 1 0 0 1 1 1 1 DHH family PhzC-PhzF PF02567.11 gi|345004258|ref|YP_004807111.1| - 4.6e-67 226.1 0.2 5.6e-67 225.9 0.1 1.0 1 0 0 1 1 1 1 Phenazine biosynthesis-like protein Pro_racemase PF05544.6 gi|345004258|ref|YP_004807111.1| - 0.00033 19.5 0.0 0.00056 18.8 0.0 1.3 1 0 0 1 1 1 1 Proline racemase Hydrolase_4 PF12146.3 gi|345004258|ref|YP_004807111.1| - 0.11 12.3 0.1 0.3 10.9 0.0 1.7 2 0 0 2 2 2 0 Putative lysophospholipase Usp PF00582.21 gi|345004259|ref|YP_004807112.1| - 2.7e-22 79.4 0.6 3.8e-22 78.9 0.4 1.2 1 0 0 1 1 1 1 Universal stress protein family DUF1451 PF07295.6 gi|345004260|ref|YP_004807113.1| - 0.017 14.9 0.8 0.021 14.5 0.6 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1451) FYVE PF01363.16 gi|345004260|ref|YP_004807113.1| - 0.03 14.2 1.3 0.037 13.9 0.9 1.1 1 0 0 1 1 1 0 FYVE zinc finger C1_1 PF00130.17 gi|345004260|ref|YP_004807113.1| - 0.031 13.9 0.8 0.041 13.6 0.5 1.2 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) A2L_zn_ribbon PF08792.5 gi|345004260|ref|YP_004807113.1| - 0.038 13.4 1.7 4.3 6.9 0.1 2.2 2 0 0 2 2 2 0 A2L zinc ribbon domain Nudix_N_2 PF14803.1 gi|345004260|ref|YP_004807113.1| - 0.049 13.3 0.8 3.1 7.5 0.1 2.1 2 0 0 2 2 2 0 Nudix N-terminal zf-C2H2_jaz PF12171.3 gi|345004260|ref|YP_004807113.1| - 0.07 13.2 1.0 0.55 10.4 0.0 2.2 2 0 0 2 2 2 0 Zinc-finger double-stranded RNA-binding HypA PF01155.14 gi|345004260|ref|YP_004807113.1| - 0.089 12.4 0.9 0.11 12.2 0.6 1.1 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family DUF1272 PF06906.6 gi|345004260|ref|YP_004807113.1| - 0.1 12.4 0.9 0.14 11.9 0.6 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1272) Jiv90 PF14901.1 gi|345004260|ref|YP_004807113.1| - 0.13 12.2 1.0 0.15 12.0 0.7 1.1 1 0 0 1 1 1 0 Cleavage inducing molecular chaperone DZR PF12773.2 gi|345004260|ref|YP_004807113.1| - 0.35 10.7 3.5 4.6 7.1 2.7 1.8 1 1 0 1 1 1 0 Double zinc ribbon zf-dskA_traR PF01258.12 gi|345004260|ref|YP_004807113.1| - 0.38 10.5 3.0 6.5 6.5 0.2 2.2 2 0 0 2 2 2 0 Prokaryotic dksA/traR C4-type zinc finger zinc-ribbons_6 PF07191.7 gi|345004260|ref|YP_004807113.1| - 0.41 10.4 3.2 1.1 9.1 2.3 1.6 1 1 0 1 1 1 0 zinc-ribbons UPF0547 PF10571.4 gi|345004260|ref|YP_004807113.1| - 0.42 10.3 3.5 3.5 7.4 2.5 2.0 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 LIM PF00412.17 gi|345004260|ref|YP_004807113.1| - 0.53 10.3 3.4 2.5 8.2 2.3 1.8 1 1 0 1 1 1 0 LIM domain GCC2_GCC3 PF07699.8 gi|345004260|ref|YP_004807113.1| - 0.75 9.4 4.8 1.3 8.6 0.3 2.1 1 1 1 2 2 2 0 GCC2 and GCC3 DNA_RNApol_7kD PF03604.8 gi|345004260|ref|YP_004807113.1| - 5.1 6.6 6.6 62 3.1 4.6 2.1 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit MFS_1 PF07690.11 gi|345004261|ref|YP_004807114.1| - 1.2e-30 106.4 74.8 6e-28 97.5 34.9 2.2 1 1 1 2 2 2 2 Major Facilitator Superfamily DHQS PF01959.11 gi|345004262|ref|YP_004807115.1| - 1.3e-140 468.1 6.0 1.4e-140 467.9 4.2 1.0 1 0 0 1 1 1 1 3-dehydroquinate synthase (EC 4.6.1.3) Hint PF01079.15 gi|345004262|ref|YP_004807115.1| - 0.00017 20.9 0.7 0.013 14.7 0.1 2.3 1 1 1 2 2 2 2 Hint module Hint_2 PF13403.1 gi|345004262|ref|YP_004807115.1| - 0.0089 15.9 0.7 2.4 8.1 0.0 2.8 2 0 0 2 2 2 2 Hint domain OapA PF04225.7 gi|345004262|ref|YP_004807115.1| - 0.052 13.4 0.0 5 7.0 0.0 2.5 2 0 0 2 2 2 0 Opacity-associated protein A LysM-like domain QRPTase_C PF01729.14 gi|345004262|ref|YP_004807115.1| - 0.15 11.5 4.3 0.49 9.9 0.2 2.9 3 1 0 3 3 3 0 Quinolinate phosphoribosyl transferase, C-terminal domain DUF4191 PF13829.1 gi|345004263|ref|YP_004807116.1| - 0.062 12.4 0.3 0.061 12.4 0.2 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4191) FecCD PF01032.13 gi|345004263|ref|YP_004807116.1| - 0.22 10.3 3.0 0.23 10.2 2.1 1.0 1 0 0 1 1 1 0 FecCD transport family PHO4 PF01384.15 gi|345004264|ref|YP_004807117.1| - 2.3e-42 144.8 34.2 2.3e-42 144.8 23.7 1.9 1 1 1 2 2 2 1 Phosphate transporter family YwiC PF14256.1 gi|345004265|ref|YP_004807118.1| - 0.09 12.8 0.0 0.1 12.6 0.0 1.0 1 0 0 1 1 1 0 YwiC-like protein Cupin_2 PF07883.6 gi|345004266|ref|YP_004807119.1| - 9.4e-13 47.4 0.4 1.9e-12 46.4 0.3 1.6 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.14 gi|345004266|ref|YP_004807119.1| - 0.0012 18.5 0.1 0.0015 18.1 0.1 1.3 1 0 0 1 1 1 1 AraC-like ligand binding domain DZR PF12773.2 gi|345004266|ref|YP_004807119.1| - 0.0064 16.2 0.5 0.011 15.5 0.4 1.4 1 0 0 1 1 1 1 Double zinc ribbon RecR PF02132.10 gi|345004266|ref|YP_004807119.1| - 0.021 14.2 1.1 1.7 8.1 0.1 2.3 2 0 0 2 2 2 0 RecR protein HypA PF01155.14 gi|345004266|ref|YP_004807119.1| - 0.033 13.8 0.0 0.04 13.5 0.0 1.2 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family Nudix_N_2 PF14803.1 gi|345004266|ref|YP_004807119.1| - 0.072 12.7 4.5 1 9.0 3.3 2.3 1 1 1 2 2 2 0 Nudix N-terminal Lar_restr_allev PF14354.1 gi|345004266|ref|YP_004807119.1| - 0.13 12.5 1.9 0.38 11.1 0.8 2.0 2 0 0 2 2 2 0 Restriction alleviation protein Lar C1_3 PF07649.7 gi|345004266|ref|YP_004807119.1| - 0.3 11.1 1.6 8.5 6.5 0.1 2.4 2 0 0 2 2 2 0 C1-like domain Oxidored_molyb PF00174.14 gi|345004267|ref|YP_004807120.1| - 1.7e-31 108.9 0.1 3.1e-31 108.0 0.1 1.3 1 0 0 1 1 1 1 Oxidoreductase molybdopterin binding domain Cytochrom_B_N PF00033.14 gi|345004267|ref|YP_004807120.1| - 0.0011 18.4 14.5 0.03 13.6 2.4 2.5 1 1 1 2 2 2 2 Cytochrome b(N-terminal)/b6/petB Ni_hydr_CYTB PF01292.15 gi|345004267|ref|YP_004807120.1| - 0.024 14.0 12.9 1.2 8.5 5.2 2.4 1 1 1 2 2 2 0 Prokaryotic cytochrome b561 Polysacc_synt_C PF14667.1 gi|345004267|ref|YP_004807120.1| - 0.049 13.4 8.0 0.13 12.0 5.5 1.7 1 1 0 1 1 1 0 Polysaccharide biosynthesis C-terminal domain UPF0233 PF06781.7 gi|345004267|ref|YP_004807120.1| - 1.2 8.8 5.7 0.22 11.1 0.5 2.3 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0233) PepSY_TM_3 PF13706.1 gi|345004267|ref|YP_004807120.1| - 1.7 8.1 8.6 11 5.5 0.6 3.2 2 0 0 2 2 2 0 PepSY-associated TM helix adh_short PF00106.20 gi|345004268|ref|YP_004807121.1| - 2.3e-36 125.2 2.1 3e-36 124.8 1.5 1.1 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|345004268|ref|YP_004807121.1| - 3.5e-26 92.4 0.5 4.2e-26 92.1 0.3 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.5 gi|345004268|ref|YP_004807121.1| - 2.2e-15 56.8 0.4 2.8e-15 56.4 0.3 1.2 1 0 0 1 1 1 1 KR domain Epimerase PF01370.16 gi|345004268|ref|YP_004807121.1| - 1.3e-06 28.0 1.3 3e-06 26.8 0.7 1.8 2 1 0 2 2 2 1 NAD dependent epimerase/dehydratase family Radical_SAM PF04055.16 gi|345004268|ref|YP_004807121.1| - 0.019 15.1 0.1 0.12 12.5 0.0 2.2 2 1 0 2 2 2 0 Radical SAM superfamily FeoA PF04023.9 gi|345004268|ref|YP_004807121.1| - 0.053 13.4 0.4 0.54 10.2 0.0 2.4 2 0 0 2 2 2 0 FeoA domain F420_oxidored PF03807.12 gi|345004268|ref|YP_004807121.1| - 0.17 12.3 1.3 0.41 11.1 0.2 2.2 2 2 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent Aminotran_1_2 PF00155.16 gi|345004269|ref|YP_004807122.1| - 2.7e-65 220.7 0.0 3.1e-65 220.5 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.14 gi|345004269|ref|YP_004807122.1| - 2.6e-10 39.6 0.0 2.7e-07 29.6 0.0 2.1 2 0 0 2 2 2 2 Aminotransferase class-V Beta_elim_lyase PF01212.16 gi|345004269|ref|YP_004807122.1| - 3.7e-09 36.1 0.1 6.3e-09 35.3 0.1 1.5 1 1 0 1 1 1 1 Beta-eliminating lyase Cys_Met_Meta_PP PF01053.15 gi|345004269|ref|YP_004807122.1| - 2.4e-06 26.1 0.0 4.3e-06 25.2 0.0 1.3 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_MocR PF12897.2 gi|345004269|ref|YP_004807122.1| - 0.00017 20.3 0.0 0.00023 19.8 0.0 1.2 1 0 0 1 1 1 1 Alanine-glyoxylate amino-transferase Aminotran_3 PF00202.16 gi|345004269|ref|YP_004807122.1| - 0.029 13.2 0.0 0.04 12.7 0.0 1.3 1 0 0 1 1 1 0 Aminotransferase class-III GST_N_2 PF13409.1 gi|345004270|ref|YP_004807123.1| - 1.1e-22 79.8 0.1 3.7e-22 78.1 0.0 1.9 2 0 0 2 2 2 1 Glutathione S-transferase, N-terminal domain GST_C_2 PF13410.1 gi|345004270|ref|YP_004807123.1| - 7e-14 51.4 0.9 2.1e-13 49.9 0.5 1.9 2 0 0 2 2 2 1 Glutathione S-transferase, C-terminal domain GST_C_3 PF14497.1 gi|345004270|ref|YP_004807123.1| - 6.2e-08 33.0 0.0 1e-07 32.3 0.0 1.4 1 0 0 1 1 1 1 Glutathione S-transferase, C-terminal domain GST_C PF00043.20 gi|345004270|ref|YP_004807123.1| - 8.5e-08 32.0 0.1 1.7e-07 31.0 0.1 1.5 1 1 0 1 1 1 1 Glutathione S-transferase, C-terminal domain GST_N_3 PF13417.1 gi|345004270|ref|YP_004807123.1| - 1.8e-07 31.2 0.0 3.8e-06 27.0 0.0 2.7 2 1 0 2 2 2 1 Glutathione S-transferase, N-terminal domain Aldolase_2 PF10120.4 gi|345004271|ref|YP_004807124.1| - 5.8e-43 146.2 0.0 8.2e-43 145.7 0.0 1.2 1 0 0 1 1 1 1 Putative aldolase HTH_3 PF01381.17 gi|345004271|ref|YP_004807124.1| - 3.1e-07 30.1 0.0 6.4e-07 29.1 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.1 gi|345004271|ref|YP_004807124.1| - 2.3e-06 27.6 0.3 2.3e-06 27.6 0.2 2.5 3 1 0 3 3 3 1 Helix-turn-helix domain HTH_37 PF13744.1 gi|345004271|ref|YP_004807124.1| - 4.4e-05 23.2 0.0 7.7e-05 22.4 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_26 PF13443.1 gi|345004271|ref|YP_004807124.1| - 0.0017 18.5 0.0 0.0032 17.6 0.0 1.4 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain MarR_2 PF12802.2 gi|345004271|ref|YP_004807124.1| - 0.002 17.7 0.1 0.012 15.2 0.1 2.3 2 0 0 2 2 2 1 MarR family HTH_38 PF13936.1 gi|345004271|ref|YP_004807124.1| - 0.002 17.6 0.0 0.0038 16.7 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_19 PF12844.2 gi|345004271|ref|YP_004807124.1| - 0.0022 17.9 0.0 0.0039 17.2 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.1 gi|345004271|ref|YP_004807124.1| - 0.0037 16.8 0.1 0.015 14.9 0.0 2.0 2 0 0 2 2 2 1 Homeodomain-like domain Sigma70_r4 PF04545.11 gi|345004271|ref|YP_004807124.1| - 0.0045 16.2 0.0 0.011 15.0 0.0 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_24 PF13412.1 gi|345004271|ref|YP_004807124.1| - 0.016 14.6 0.0 0.04 13.3 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding DUF3071 PF11268.3 gi|345004271|ref|YP_004807124.1| - 0.036 13.8 0.1 0.069 12.8 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3071) RepB PF07506.6 gi|345004271|ref|YP_004807124.1| - 0.041 13.7 0.1 0.069 13.0 0.0 1.3 1 0 0 1 1 1 0 RepB plasmid partitioning protein HTH_Tnp_ISL3 PF13542.1 gi|345004271|ref|YP_004807124.1| - 0.045 12.9 0.1 0.22 10.7 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain of transposase family ISL3 P22_Cro PF14549.1 gi|345004271|ref|YP_004807124.1| - 0.11 12.1 0.1 0.3 10.8 0.0 1.7 1 0 0 1 1 1 0 DNA-binding transcriptional regulator Cro DUF2481 PF10654.4 gi|345004271|ref|YP_004807124.1| - 0.13 12.0 0.0 0.21 11.3 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2481) HTH_Tnp_4 PF13613.1 gi|345004271|ref|YP_004807124.1| - 0.16 11.5 0.0 0.4 10.2 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix of DDE superfamily endonuclease HTH_20 PF12840.2 gi|345004271|ref|YP_004807124.1| - 0.51 10.1 3.5 2.9 7.7 0.0 3.5 4 0 0 4 4 4 0 Helix-turn-helix domain DCD PF06559.6 gi|345004272|ref|YP_004807125.1| - 3.2e-23 81.7 0.2 8e-13 47.5 0.0 2.1 1 1 1 2 2 2 2 2'-deoxycytidine 5'-triphosphate deaminase (DCD) dUTPase PF00692.14 gi|345004272|ref|YP_004807125.1| - 1.4e-17 63.3 0.0 2e-17 62.8 0.0 1.2 1 0 0 1 1 1 1 dUTPase bPH_2 PF03703.9 gi|345004273|ref|YP_004807126.1| - 4.6e-14 52.1 0.2 7.7e-14 51.4 0.1 1.3 1 0 0 1 1 1 1 Bacterial PH domain DUF3311 PF11755.3 gi|345004273|ref|YP_004807126.1| - 0.037 13.5 0.4 0.037 13.5 0.3 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF3311) DUF373 PF04123.8 gi|345004273|ref|YP_004807126.1| - 0.24 10.3 3.0 0.12 11.4 0.7 1.5 2 0 0 2 2 2 0 Domain of unknown function (DUF373) DUF4480 PF13715.1 gi|345004274|ref|YP_004807127.1| - 2.7e-05 24.1 0.0 2.7e-05 24.1 0.0 2.7 4 0 0 4 4 4 1 Domain of unknown function (DUF4480) PilX_N PF14341.1 gi|345004274|ref|YP_004807127.1| - 0.2 11.3 0.2 0.2 11.3 0.1 2.5 3 0 0 3 3 3 0 PilX N-terminal PTH2 PF01981.11 gi|345004276|ref|YP_004807129.1| - 1.6e-41 140.6 0.0 1.8e-41 140.4 0.0 1.0 1 0 0 1 1 1 1 Peptidyl-tRNA hydrolase PTH2 TruD PF01142.13 gi|345004277|ref|YP_004807130.1| - 3.8e-89 298.9 0.0 4.5e-89 298.7 0.0 1.1 1 0 0 1 1 1 1 tRNA pseudouridine synthase D (TruD) DUF2103 PF09876.4 gi|345004278|ref|YP_004807131.1| - 1.2e-43 147.0 0.5 1.7e-43 146.5 0.4 1.2 1 0 0 1 1 1 1 Predicted metal-binding protein (DUF2103) HlyD_2 PF12700.2 gi|345004278|ref|YP_004807131.1| - 0.098 11.7 0.1 0.14 11.2 0.0 1.1 1 0 0 1 1 1 0 HlyD family secretion protein Ribosomal_L37ae PF01780.14 gi|345004279|ref|YP_004807132.1| - 2.7e-25 88.0 1.0 3e-25 87.9 0.7 1.0 1 0 0 1 1 1 1 Ribosomal L37ae protein family DNA_RNApol_7kD PF03604.8 gi|345004280|ref|YP_004807133.1| - 3.3e-10 39.2 5.9 4e-10 38.9 4.1 1.1 1 0 0 1 1 1 1 DNA directed RNA polymerase, 7 kDa subunit HypA PF01155.14 gi|345004280|ref|YP_004807133.1| - 0.0006 19.4 0.3 0.0006 19.4 0.2 1.1 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family zf-ribbon_3 PF13248.1 gi|345004280|ref|YP_004807133.1| - 0.0021 17.2 2.2 0.026 13.7 0.2 2.0 1 1 1 2 2 2 2 zinc-ribbon domain DUF329 PF03884.9 gi|345004280|ref|YP_004807133.1| - 0.0029 17.1 0.8 0.3 10.6 1.2 2.1 1 1 1 2 2 2 2 Domain of unknown function (DUF329) A2L_zn_ribbon PF08792.5 gi|345004280|ref|YP_004807133.1| - 0.003 16.9 1.6 0.22 11.0 0.0 2.1 1 1 1 2 2 2 2 A2L zinc ribbon domain TF_Zn_Ribbon PF08271.7 gi|345004280|ref|YP_004807133.1| - 0.0031 16.8 1.6 0.004 16.4 1.1 1.3 1 0 0 1 1 1 1 TFIIB zinc-binding Zn_Tnp_IS1595 PF12760.2 gi|345004280|ref|YP_004807133.1| - 0.0046 16.7 4.6 0.14 12.0 0.1 2.1 2 0 0 2 2 2 1 Transposase zinc-ribbon domain zf-CHCC PF10276.4 gi|345004280|ref|YP_004807133.1| - 0.012 15.4 0.2 0.02 14.7 0.1 1.4 1 0 0 1 1 1 0 Zinc-finger domain Cys_rich_CPXG PF14255.1 gi|345004280|ref|YP_004807133.1| - 0.013 15.3 0.8 0.042 13.6 0.1 1.9 2 0 0 2 2 2 0 Cysteine-rich CPXCG RNHCP PF12647.2 gi|345004280|ref|YP_004807133.1| - 0.014 15.1 0.2 0.018 14.8 0.1 1.2 1 0 0 1 1 1 0 RNHCP domain DZR PF12773.2 gi|345004280|ref|YP_004807133.1| - 0.018 14.8 0.8 0.051 13.3 0.6 1.7 1 1 0 1 1 1 0 Double zinc ribbon Sgf11 PF08209.6 gi|345004280|ref|YP_004807133.1| - 0.022 14.0 2.6 0.61 9.4 0.2 2.1 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) Prok-RING_1 PF14446.1 gi|345004280|ref|YP_004807133.1| - 0.025 14.3 1.5 0.056 13.1 1.0 1.6 1 1 0 1 1 1 0 Prokaryotic RING finger family 1 DUF951 PF06107.6 gi|345004280|ref|YP_004807133.1| - 0.031 13.7 1.5 2.4 7.7 0.1 2.1 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF951) zf-Di19 PF05605.7 gi|345004280|ref|YP_004807133.1| - 0.034 14.2 0.5 0.85 9.7 0.0 2.1 2 0 0 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding zinc_ribbon_2 PF13240.1 gi|345004280|ref|YP_004807133.1| - 0.039 13.4 4.5 0.38 10.2 3.1 2.1 1 1 0 1 1 1 0 zinc-ribbon domain CpXC PF14353.1 gi|345004280|ref|YP_004807133.1| - 0.046 13.6 1.4 1.3 8.9 0.0 2.0 1 1 1 2 2 2 0 CpXC protein zf-HIT PF04438.11 gi|345004280|ref|YP_004807133.1| - 0.05 13.2 3.8 0.79 9.4 0.5 2.0 2 0 0 2 2 2 0 HIT zinc finger DNA_ligase_ZBD PF03119.11 gi|345004280|ref|YP_004807133.1| - 0.051 13.2 0.2 0.083 12.5 0.1 1.5 1 0 0 1 1 1 0 NAD-dependent DNA ligase C4 zinc finger domain zf-ISL3 PF14690.1 gi|345004280|ref|YP_004807133.1| - 0.057 13.4 1.8 0.25 11.4 0.1 2.0 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-AN1 PF01428.11 gi|345004280|ref|YP_004807133.1| - 0.06 13.2 0.9 0.13 12.1 0.6 1.5 1 1 0 1 1 1 0 AN1-like Zinc finger TFIIS_C PF01096.13 gi|345004280|ref|YP_004807133.1| - 0.066 12.8 1.3 5 6.8 0.0 2.1 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) Mu-like_Com PF10122.4 gi|345004280|ref|YP_004807133.1| - 0.067 12.2 2.5 2.3 7.3 0.1 2.3 2 1 0 2 2 2 0 Mu-like prophage protein Com zf-RING_3 PF14369.1 gi|345004280|ref|YP_004807133.1| - 0.085 12.8 2.0 0.13 12.2 1.4 1.3 1 0 0 1 1 1 0 zinc-finger zf-C2H2_4 PF13894.1 gi|345004280|ref|YP_004807133.1| - 0.094 13.0 1.1 3.1 8.3 0.1 2.1 2 0 0 2 2 2 0 C2H2-type zinc finger TerY-C PF15616.1 gi|345004280|ref|YP_004807133.1| - 0.099 12.5 0.1 0.11 12.4 0.1 1.2 1 0 0 1 1 1 0 TerY-C metal binding domain OrfB_Zn_ribbon PF07282.6 gi|345004280|ref|YP_004807133.1| - 0.11 12.1 3.9 0.12 12.0 1.6 1.8 1 1 1 2 2 2 0 Putative transposase DNA-binding domain C1_1 PF00130.17 gi|345004280|ref|YP_004807133.1| - 0.12 12.0 0.5 0.15 11.7 0.3 1.3 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) Spt4 PF06093.8 gi|345004280|ref|YP_004807133.1| - 0.12 12.2 0.1 0.14 12.0 0.1 1.0 1 0 0 1 1 1 0 Spt4/RpoE2 zinc finger zf-TFIIB PF13453.1 gi|345004280|ref|YP_004807133.1| - 0.14 11.3 1.5 0.31 10.2 1.1 1.5 1 1 1 2 2 2 0 Transcription factor zinc-finger Zn_ribbon_recom PF13408.1 gi|345004280|ref|YP_004807133.1| - 0.17 12.1 2.9 1.2 9.4 0.2 2.1 2 0 0 2 2 2 0 Recombinase zinc beta ribbon domain Lar_restr_allev PF14354.1 gi|345004280|ref|YP_004807133.1| - 0.19 12.0 1.0 0.49 10.7 0.0 1.8 1 1 0 1 1 1 0 Restriction alleviation protein Lar Desulfoferrod_N PF06397.7 gi|345004280|ref|YP_004807133.1| - 0.21 11.0 2.7 4.5 6.7 0.2 2.1 1 1 1 2 2 2 0 Desulfoferrodoxin, N-terminal domain Thioredoxin_4 PF13462.1 gi|345004280|ref|YP_004807133.1| - 0.34 10.9 1.8 0.54 10.2 0.0 1.9 1 1 1 2 2 2 0 Thioredoxin zf-IS66 PF13005.2 gi|345004280|ref|YP_004807133.1| - 0.45 10.5 4.7 0.52 10.3 0.1 2.1 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 zf-NADH-PPase PF09297.6 gi|345004280|ref|YP_004807133.1| - 0.46 10.0 0.2 0.46 10.0 0.2 2.0 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain zinc_ribbon_4 PF13717.1 gi|345004280|ref|YP_004807133.1| - 0.46 10.2 7.6 10 5.8 4.1 2.4 2 1 0 2 2 1 0 zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|345004280|ref|YP_004807133.1| - 0.57 10.1 4.9 4.7 7.2 3.4 2.0 1 1 0 1 1 1 0 Zinc ribbon domain zinc_ribbon_5 PF13719.1 gi|345004280|ref|YP_004807133.1| - 0.74 9.4 8.2 17 5.0 4.5 2.5 2 1 0 2 2 2 0 zinc-ribbon domain zf-C2H2 PF00096.21 gi|345004280|ref|YP_004807133.1| - 0.92 9.9 3.6 11 6.6 0.1 2.1 2 0 0 2 2 2 0 Zinc finger, C2H2 type UPF0547 PF10571.4 gi|345004280|ref|YP_004807133.1| - 6 6.6 7.4 0.62 9.8 1.3 1.9 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zf-C2HC_2 PF13913.1 gi|345004280|ref|YP_004807133.1| - 6.3 6.5 7.3 6.2 6.6 0.7 2.1 2 0 0 2 2 2 0 zinc-finger of a C2HC-type Pcc1 PF09341.5 gi|345004281|ref|YP_004807134.1| - 6.6e-16 58.1 1.1 7.3e-16 57.9 0.8 1.0 1 0 0 1 1 1 1 Transcription factor Pcc1 Pro_dh PF01619.13 gi|345004282|ref|YP_004807135.1| - 1.9e-36 125.6 0.0 7.6e-36 123.6 0.0 1.8 1 1 0 1 1 1 1 Proline dehydrogenase DUF502 PF04367.8 gi|345004283|ref|YP_004807136.1| - 5.4e-18 64.7 1.5 5.5e-18 64.7 0.0 1.7 2 0 0 2 2 2 1 Protein of unknown function (DUF502) GBV-C_env PF12786.2 gi|345004283|ref|YP_004807136.1| - 0.23 9.8 0.5 0.3 9.4 0.4 1.1 1 0 0 1 1 1 0 GB virus C genotype envelope SNARE_assoc PF09335.6 gi|345004284|ref|YP_004807137.1| - 1.1e-11 45.0 6.0 3.2e-11 43.4 4.2 1.8 1 1 0 1 1 1 1 SNARE associated Golgi protein tRNA-synt_1g PF09334.6 gi|345004285|ref|YP_004807138.1| - 1.6e-132 441.8 0.0 1.3e-131 438.8 0.0 2.0 1 1 0 1 1 1 1 tRNA synthetases class I (M) tRNA_bind PF01588.15 gi|345004285|ref|YP_004807138.1| - 2.3e-23 81.8 0.1 4e-23 81.0 0.1 1.4 1 0 0 1 1 1 1 Putative tRNA binding domain tRNA-synt_1 PF00133.17 gi|345004285|ref|YP_004807138.1| - 1.3e-16 59.8 0.8 7.7e-11 40.6 0.0 3.6 3 1 0 3 3 3 2 tRNA synthetases class I (I, L, M and V) tRNA-synt_1e PF01406.14 gi|345004285|ref|YP_004807138.1| - 2e-11 43.5 0.0 3.2e-07 29.7 0.0 2.3 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain Anticodon_1 PF08264.8 gi|345004285|ref|YP_004807138.1| - 3.9e-08 33.2 0.0 6.9e-08 32.3 0.0 1.3 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1d PF00750.14 gi|345004285|ref|YP_004807138.1| - 0.0017 17.2 0.2 1.8 7.3 0.0 2.5 3 0 0 3 3 3 2 tRNA synthetases class I (R) tRNA-synt_1f PF01921.13 gi|345004285|ref|YP_004807138.1| - 0.037 12.6 0.0 0.098 11.3 0.0 1.7 2 0 0 2 2 2 0 tRNA synthetases class I (K) Fer4_15 PF13459.1 gi|345004286|ref|YP_004807139.1| - 3.8e-17 62.6 2.6 4.6e-17 62.3 1.8 1.1 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_13 PF13370.1 gi|345004286|ref|YP_004807139.1| - 2.2e-09 37.5 1.2 4.8e-09 36.4 0.8 1.6 1 1 0 1 1 1 1 4Fe-4S single cluster domain Fer4_19 PF06902.6 gi|345004286|ref|YP_004807139.1| - 0.025 14.3 0.2 0.17 11.7 0.1 2.0 1 1 0 1 1 1 0 Divergent 4Fe-4S mono-cluster Fer4 PF00037.22 gi|345004286|ref|YP_004807139.1| - 0.027 14.0 2.0 0.56 9.8 0.1 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_10 PF13237.1 gi|345004286|ref|YP_004807139.1| - 0.029 14.1 0.0 0.13 12.0 0.0 1.9 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|345004286|ref|YP_004807139.1| - 0.11 12.9 0.3 14 6.1 0.0 2.3 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|345004286|ref|YP_004807139.1| - 0.11 12.3 2.1 5.9 6.9 0.1 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain ERCC4 PF02732.10 gi|345004287|ref|YP_004807140.1| - 3.5e-24 85.2 0.1 1e-23 83.6 0.0 1.9 2 0 0 2 2 2 1 ERCC4 domain DEAD PF00270.24 gi|345004287|ref|YP_004807140.1| - 1.7e-17 63.4 0.0 5.8e-17 61.6 0.0 1.9 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|345004287|ref|YP_004807140.1| - 1.9e-17 62.8 0.1 4.3e-17 61.7 0.0 1.6 1 0 0 1 1 1 1 Helicase conserved C-terminal domain HHH_5 PF14520.1 gi|345004287|ref|YP_004807140.1| - 4.4e-11 42.7 0.6 5.4e-10 39.2 0.0 2.9 2 0 0 2 2 2 1 Helix-hairpin-helix domain ResIII PF04851.10 gi|345004287|ref|YP_004807140.1| - 6.3e-11 42.4 0.0 1.4e-10 41.3 0.0 1.5 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit HHH_2 PF12826.2 gi|345004287|ref|YP_004807140.1| - 4.5e-09 36.0 0.1 1.9e-08 34.0 0.0 2.1 2 0 0 2 2 2 1 Helix-hairpin-helix motif HHH PF00633.18 gi|345004287|ref|YP_004807140.1| - 2.1e-08 33.3 1.8 9.3e-06 25.0 0.0 3.5 3 0 0 3 3 3 2 Helix-hairpin-helix motif 5_3_exonuc PF01367.15 gi|345004287|ref|YP_004807140.1| - 0.0027 17.8 0.0 0.026 14.7 0.0 2.4 1 1 1 2 2 2 1 5'-3' exonuclease, C-terminal SAM fold Usp PF00582.21 gi|345004288|ref|YP_004807141.1| - 5.4e-21 75.2 3.7 7e-21 74.8 2.5 1.2 1 0 0 1 1 1 1 Universal stress protein family ETF PF01012.16 gi|345004288|ref|YP_004807141.1| - 0.0028 17.3 2.4 0.0093 15.6 0.2 2.0 1 1 1 2 2 2 1 Electron transfer flavoprotein domain DUF849 PF05853.7 gi|345004288|ref|YP_004807141.1| - 0.014 14.2 0.0 0.033 13.0 0.0 1.4 1 1 1 2 2 2 0 Prokaryotic protein of unknown function (DUF849) Fe-ADH PF00465.14 gi|345004288|ref|YP_004807141.1| - 0.041 12.5 0.1 0.047 12.3 0.0 1.1 1 0 0 1 1 1 0 Iron-containing alcohol dehydrogenase Auto_anti-p27 PF06677.7 gi|345004289|ref|YP_004807142.1| - 1.6e-16 59.7 0.3 2.4e-16 59.2 0.2 1.3 1 0 0 1 1 1 1 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) DZR PF12773.2 gi|345004289|ref|YP_004807142.1| - 0.017 14.9 2.8 0.038 13.8 2.0 1.5 1 0 0 1 1 1 0 Double zinc ribbon FYVE_2 PF02318.11 gi|345004289|ref|YP_004807142.1| - 0.022 14.6 1.2 0.038 13.8 0.8 1.4 1 0 0 1 1 1 0 FYVE-type zinc finger GFA PF04828.9 gi|345004289|ref|YP_004807142.1| - 0.06 13.2 1.7 0.3 11.0 0.0 2.3 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme zinc-ribbons_6 PF07191.7 gi|345004289|ref|YP_004807142.1| - 0.23 11.2 2.1 0.4 10.5 1.5 1.4 1 0 0 1 1 1 0 zinc-ribbons PAT1 PF09770.4 gi|345004289|ref|YP_004807142.1| - 2.8 6.0 14.0 3.1 5.9 9.7 1.1 1 0 0 1 1 1 0 Topoisomerase II-associated protein PAT1 NifU PF01106.12 gi|345004290|ref|YP_004807143.1| - 2e-10 40.3 0.0 2.8e-10 39.8 0.0 1.3 1 0 0 1 1 1 1 NifU-like domain RE_Eco47II PF09553.5 gi|345004291|ref|YP_004807144.1| - 0.0094 15.0 0.0 0.01 14.9 0.0 1.1 1 0 0 1 1 1 1 Eco47II restriction endonuclease FIST_C PF10442.4 gi|345004292|ref|YP_004807145.1| - 0.093 12.6 0.0 0.19 11.6 0.0 1.5 1 0 0 1 1 1 0 FIST C domain AAA_19 PF13245.1 gi|345004292|ref|YP_004807145.1| - 0.1 12.3 0.2 0.17 11.6 0.1 1.4 1 0 0 1 1 1 0 Part of AAA domain DUF2088 PF09861.4 gi|345004293|ref|YP_004807146.1| - 0.0011 18.0 0.0 0.0015 17.5 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF2088) Asparaginase_II PF06089.7 gi|345004293|ref|YP_004807146.1| - 0.053 12.1 0.0 0.085 11.5 0.0 1.2 1 0 0 1 1 1 0 L-asparaginase II MR_MLE_C PF13378.1 gi|345004294|ref|YP_004807147.1| - 9.2e-27 93.2 0.0 2e-26 92.1 0.0 1.6 1 0 0 1 1 1 1 Enolase C-terminal domain-like MR_MLE_N PF02746.11 gi|345004294|ref|YP_004807147.1| - 3.2e-20 72.2 0.0 5.4e-20 71.5 0.0 1.4 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain MR_MLE PF01188.16 gi|345004294|ref|YP_004807147.1| - 3.1e-16 59.6 0.1 1.8e-15 57.2 0.0 2.2 2 0 0 2 2 2 1 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain Enolase_N PF03952.11 gi|345004294|ref|YP_004807147.1| - 0.0091 15.9 0.0 0.017 15.0 0.0 1.4 1 0 0 1 1 1 1 Enolase, N-terminal domain MR_MLE_C PF13378.1 gi|345004295|ref|YP_004807148.1| - 2.1e-28 98.4 0.1 4.4e-27 94.2 0.0 2.4 2 0 0 2 2 2 1 Enolase C-terminal domain-like MR_MLE_N PF02746.11 gi|345004295|ref|YP_004807148.1| - 5.2e-15 55.4 0.1 1.1e-14 54.3 0.0 1.6 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain MR_MLE PF01188.16 gi|345004295|ref|YP_004807148.1| - 4.9e-13 49.3 1.4 1e-12 48.3 0.5 1.9 2 0 0 2 2 2 1 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain Tim17 PF02466.14 gi|345004295|ref|YP_004807148.1| - 0.12 12.4 0.1 0.27 11.3 0.0 1.6 2 0 0 2 2 2 0 Tim17/Tim22/Tim23/Pmp24 family DUF4015 PF13200.1 gi|345004295|ref|YP_004807148.1| - 0.15 10.9 0.3 0.24 10.2 0.2 1.3 1 0 0 1 1 1 0 Putative glycosyl hydrolase domain Helicase_C_2 PF13307.1 gi|345004296|ref|YP_004807149.1| - 1.8e-21 76.8 0.0 2.7e-21 76.2 0.0 1.3 1 0 0 1 1 1 1 Helicase C-terminal domain DEAD_2 PF06733.10 gi|345004296|ref|YP_004807149.1| - 2.4e-05 23.7 0.0 3.9e-05 23.1 0.0 1.3 1 0 0 1 1 1 1 DEAD_2 ResIII PF04851.10 gi|345004296|ref|YP_004807149.1| - 8e-05 22.5 0.0 0.0014 18.5 0.0 2.2 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit DEAD PF00270.24 gi|345004296|ref|YP_004807149.1| - 0.00074 19.0 0.0 0.12 11.8 0.0 2.3 2 0 0 2 2 2 1 DEAD/DEAH box helicase AAA_22 PF13401.1 gi|345004296|ref|YP_004807149.1| - 0.0011 19.0 0.0 0.0058 16.7 0.0 2.1 1 1 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|345004296|ref|YP_004807149.1| - 0.0016 18.1 0.0 0.0041 16.8 0.0 1.7 1 0 0 1 1 1 1 Part of AAA domain AAA_16 PF13191.1 gi|345004296|ref|YP_004807149.1| - 0.013 15.4 0.0 0.093 12.7 0.0 2.3 2 0 0 2 2 2 0 AAA ATPase domain AAA_30 PF13604.1 gi|345004296|ref|YP_004807149.1| - 0.021 14.3 0.0 0.74 9.3 0.0 2.2 2 0 0 2 2 2 0 AAA domain DXP_redisom_C PF08436.7 gi|345004296|ref|YP_004807149.1| - 0.031 14.1 0.0 0.075 12.9 0.0 1.6 1 0 0 1 1 1 0 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal AAA_10 PF12846.2 gi|345004296|ref|YP_004807149.1| - 0.067 12.6 0.2 7.3 5.9 0.0 2.4 2 0 0 2 2 2 0 AAA-like domain PhoH PF02562.11 gi|345004296|ref|YP_004807149.1| - 0.14 11.3 0.0 0.25 10.5 0.0 1.3 1 0 0 1 1 1 0 PhoH-like protein Adeno_IVa2 PF02456.10 gi|345004296|ref|YP_004807149.1| - 0.2 10.2 0.0 0.31 9.6 0.0 1.2 1 0 0 1 1 1 0 Adenovirus IVa2 protein DUF2075 PF09848.4 gi|345004296|ref|YP_004807149.1| - 0.21 10.5 0.0 19 4.1 0.0 2.3 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) NMD3 PF04981.8 gi|345004299|ref|YP_004807152.1| - 3e-65 219.6 0.4 3.7e-65 219.3 0.2 1.1 1 0 0 1 1 1 1 NMD3 family DZR PF12773.2 gi|345004299|ref|YP_004807152.1| - 0.012 15.4 5.8 0.33 10.8 2.5 3.1 2 1 0 2 2 2 0 Double zinc ribbon GFA PF04828.9 gi|345004299|ref|YP_004807152.1| - 0.024 14.5 3.1 1.8 8.5 0.0 3.3 2 1 1 3 3 3 0 Glutathione-dependent formaldehyde-activating enzyme zinc_ribbon_2 PF13240.1 gi|345004299|ref|YP_004807152.1| - 0.044 13.2 3.4 2.2 7.8 0.1 3.3 3 0 0 3 3 3 0 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|345004299|ref|YP_004807152.1| - 0.065 12.4 6.3 3 7.1 0.2 3.4 3 0 0 3 3 3 0 zinc-ribbon domain Rpr2 PF04032.11 gi|345004299|ref|YP_004807152.1| - 0.16 11.8 5.0 0.24 11.2 0.0 2.8 2 1 1 3 3 3 0 RNAse P Rpr2/Rpp21/SNM1 subunit domain FYVE PF01363.16 gi|345004299|ref|YP_004807152.1| - 0.19 11.6 1.7 3.9 7.4 0.5 2.4 2 0 0 2 2 2 0 FYVE zinc finger Nudix_N_2 PF14803.1 gi|345004299|ref|YP_004807152.1| - 0.87 9.3 18.3 2.1 8.0 2.5 4.0 4 0 0 4 4 4 0 Nudix N-terminal OrfB_Zn_ribbon PF07282.6 gi|345004299|ref|YP_004807152.1| - 2.8 7.6 5.1 26 4.5 0.1 3.2 2 1 1 3 3 3 0 Putative transposase DNA-binding domain Zn-ribbon_8 PF09723.5 gi|345004299|ref|YP_004807152.1| - 3.2 7.7 7.6 7.8 6.5 0.3 3.2 3 0 0 3 3 3 0 Zinc ribbon domain Epimerase PF01370.16 gi|345004300|ref|YP_004807153.1| - 1.4e-26 93.3 0.0 2.4e-25 89.3 0.0 2.0 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.12 gi|345004300|ref|YP_004807153.1| - 9.6e-13 47.6 0.0 1.3e-12 47.2 0.0 1.3 1 1 0 1 1 1 1 RmlD substrate binding domain NAD_binding_10 PF13460.1 gi|345004300|ref|YP_004807153.1| - 4.1e-10 39.9 0.2 5.7e-10 39.4 0.1 1.1 1 0 0 1 1 1 1 NADH(P)-binding NAD_binding_4 PF07993.7 gi|345004300|ref|YP_004807153.1| - 3.4e-06 26.1 0.0 6.9e-06 25.1 0.0 1.3 1 1 0 1 1 1 1 Male sterility protein adh_short PF00106.20 gi|345004300|ref|YP_004807153.1| - 2.3e-05 24.3 1.0 5.1e-05 23.2 0.7 1.6 1 1 0 1 1 1 1 short chain dehydrogenase 3Beta_HSD PF01073.14 gi|345004300|ref|YP_004807153.1| - 0.00015 20.5 0.0 0.00018 20.3 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.10 gi|345004300|ref|YP_004807153.1| - 0.001 18.0 0.0 0.0037 16.2 0.0 1.9 2 1 0 2 2 2 1 Polysaccharide biosynthesis protein KR PF08659.5 gi|345004300|ref|YP_004807153.1| - 0.024 14.3 0.3 0.069 12.8 0.2 1.8 1 1 0 1 1 1 0 KR domain DUF2493 PF10686.4 gi|345004300|ref|YP_004807153.1| - 0.029 13.9 0.1 0.075 12.5 0.1 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF2493) FAA_hydrolase PF01557.13 gi|345004301|ref|YP_004807154.1| - 2.8e-48 164.2 0.0 3.5e-48 163.9 0.0 1.0 1 0 0 1 1 1 1 Fumarylacetoacetate (FAA) hydrolase family Peptidase_M48 PF01435.13 gi|345004302|ref|YP_004807155.1| - 1.1e-39 136.3 0.0 1.4e-39 135.9 0.0 1.2 1 0 0 1 1 1 1 Peptidase family M48 Peptidase_M56 PF05569.6 gi|345004302|ref|YP_004807155.1| - 2e-06 26.9 0.3 7.5e-06 25.1 0.0 1.9 2 0 0 2 2 2 1 BlaR1 peptidase M56 DUF2201_N PF13203.1 gi|345004302|ref|YP_004807155.1| - 0.071 12.2 0.0 0.11 11.7 0.0 1.2 1 0 0 1 1 1 0 Putative metallopeptidase domain DUF4157 PF13699.1 gi|345004302|ref|YP_004807155.1| - 0.095 12.8 0.1 0.27 11.3 0.0 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4157) SprT-like PF10263.4 gi|345004302|ref|YP_004807155.1| - 0.15 11.7 0.0 0.21 11.2 0.0 1.2 1 0 0 1 1 1 0 SprT-like family MARVEL PF01284.18 gi|345004303|ref|YP_004807156.1| - 0.083 12.7 0.3 0.74 9.6 0.1 1.9 2 0 0 2 2 2 0 Membrane-associating domain DUF3185 PF11381.3 gi|345004303|ref|YP_004807156.1| - 0.19 11.5 1.8 0.23 11.2 1.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3185) PfkB PF00294.19 gi|345004305|ref|YP_004807158.1| - 2.3e-40 138.6 1.5 2.6e-40 138.4 1.0 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Pyr_redox_2 PF07992.9 gi|345004306|ref|YP_004807159.1| - 1.1e-17 64.5 0.1 1.5e-17 64.1 0.0 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|345004306|ref|YP_004807159.1| - 1.5e-11 44.7 0.0 4.5e-10 39.9 0.1 2.3 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|345004306|ref|YP_004807159.1| - 1.8e-11 44.3 0.5 8.9e-11 42.0 0.0 2.4 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.17 gi|345004306|ref|YP_004807159.1| - 3.1e-06 27.1 0.0 7.9e-06 25.8 0.0 1.6 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain TrkA_N PF02254.13 gi|345004306|ref|YP_004807159.1| - 0.0001 22.2 0.2 0.005 16.8 0.0 2.7 2 0 0 2 2 2 1 TrkA-N domain Saccharop_dh PF03435.13 gi|345004306|ref|YP_004807159.1| - 0.0028 16.6 0.1 0.46 9.4 0.0 2.2 2 0 0 2 2 2 1 Saccharopine dehydrogenase GIDA PF01134.17 gi|345004306|ref|YP_004807159.1| - 0.0037 16.1 0.1 0.042 12.7 0.0 2.4 2 0 0 2 2 2 1 Glucose inhibited division protein A UDPG_MGDP_dh_N PF03721.9 gi|345004306|ref|YP_004807159.1| - 0.028 13.8 0.0 0.053 12.8 0.0 1.4 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 3HCDH_N PF02737.13 gi|345004306|ref|YP_004807159.1| - 0.032 13.8 0.1 0.092 12.3 0.0 1.7 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ThiF PF00899.16 gi|345004306|ref|YP_004807159.1| - 0.05 13.4 0.9 1.5 8.6 0.0 2.4 2 0 0 2 2 2 0 ThiF family DAO PF01266.19 gi|345004306|ref|YP_004807159.1| - 0.052 12.4 5.2 1.2 7.9 0.0 3.3 2 1 0 3 3 3 0 FAD dependent oxidoreductase DUF188 PF02639.9 gi|345004306|ref|YP_004807159.1| - 0.06 12.7 0.0 0.12 11.8 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized BCR, YaiI/YqxD family COG1671 DUF364 PF04016.7 gi|345004306|ref|YP_004807159.1| - 0.061 12.6 0.1 0.13 11.5 0.0 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF364) NAD_binding_8 PF13450.1 gi|345004306|ref|YP_004807159.1| - 0.08 12.9 0.1 15 5.7 0.0 2.7 2 0 0 2 2 2 0 NAD(P)-binding Rossmann-like domain FAD_binding_3 PF01494.14 gi|345004306|ref|YP_004807159.1| - 0.13 11.3 1.9 1.1 8.2 0.0 2.6 3 0 0 3 3 3 0 FAD binding domain NAD_binding_7 PF13241.1 gi|345004306|ref|YP_004807159.1| - 0.15 12.3 0.0 0.87 9.8 0.0 2.3 2 0 0 2 2 2 0 Putative NAD(P)-binding HTH_10 PF04967.7 gi|345004307|ref|YP_004807160.1| - 1.2e-14 53.5 0.0 2.4e-14 52.6 0.0 1.5 1 0 0 1 1 1 1 HTH DNA binding domain MarR_2 PF12802.2 gi|345004307|ref|YP_004807160.1| - 5.8e-06 25.8 0.0 1.2e-05 24.8 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.2 gi|345004307|ref|YP_004807160.1| - 0.00011 21.8 0.0 0.00034 20.3 0.0 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|345004307|ref|YP_004807160.1| - 0.00015 21.0 0.0 0.00027 20.2 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_30 PF13556.1 gi|345004307|ref|YP_004807160.1| - 0.0016 17.9 0.0 0.005 16.4 0.0 1.8 1 0 0 1 1 1 1 PucR C-terminal helix-turn-helix domain Sigma70_r4 PF04545.11 gi|345004307|ref|YP_004807160.1| - 0.0051 16.0 0.0 0.0097 15.2 0.0 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_1 PF00126.22 gi|345004307|ref|YP_004807160.1| - 0.0055 16.4 0.0 0.018 14.8 0.0 1.9 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family HTH_5 PF01022.15 gi|345004307|ref|YP_004807160.1| - 0.0089 15.6 0.0 0.02 14.5 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family Sigma70_r4_2 PF08281.7 gi|345004307|ref|YP_004807160.1| - 0.012 15.0 0.0 0.025 14.0 0.0 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 Fe_dep_repress PF01325.14 gi|345004307|ref|YP_004807160.1| - 0.069 13.0 0.0 0.13 12.2 0.0 1.4 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_27 PF13463.1 gi|345004307|ref|YP_004807160.1| - 0.082 13.2 0.0 0.19 12.0 0.0 1.7 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_38 PF13936.1 gi|345004307|ref|YP_004807160.1| - 0.11 12.1 0.4 0.63 9.6 0.0 2.4 3 0 0 3 3 3 0 Helix-turn-helix domain HTH_AsnC-type PF13404.1 gi|345004307|ref|YP_004807160.1| - 0.11 12.0 0.1 0.29 10.6 0.1 1.8 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain Copper-bind PF00127.15 gi|345004308|ref|YP_004807161.1| - 5.1e-16 58.7 0.0 6.9e-16 58.2 0.0 1.2 1 0 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family TAT_signal PF10518.4 gi|345004308|ref|YP_004807161.1| - 0.00029 20.6 1.2 0.00029 20.6 0.9 2.1 2 0 0 2 2 2 1 TAT (twin-arginine translocation) pathway signal sequence Cupredoxin_1 PF13473.1 gi|345004308|ref|YP_004807161.1| - 0.12 12.2 0.1 0.3 11.0 0.1 1.7 1 1 0 1 1 1 0 Cupredoxin-like domain Oxidored_molyb PF00174.14 gi|345004309|ref|YP_004807162.1| - 1.8e-46 157.6 0.0 2.6e-46 157.1 0.0 1.2 1 0 0 1 1 1 1 Oxidoreductase molybdopterin binding domain Mo-co_dimer PF03404.11 gi|345004309|ref|YP_004807162.1| - 1.3e-16 60.4 0.1 2.8e-16 59.3 0.1 1.6 1 0 0 1 1 1 1 Mo-co oxidoreductase dimerisation domain UCR_Fe-S_N PF10399.4 gi|345004309|ref|YP_004807162.1| - 0.084 12.0 3.9 0.3 10.3 2.7 2.0 1 1 0 1 1 1 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal FKBP_C PF00254.23 gi|345004310|ref|YP_004807163.1| - 3.7e-13 49.3 0.0 6.5e-13 48.5 0.0 1.5 1 1 0 1 1 1 1 FKBP-type peptidyl-prolyl cis-trans isomerase Ribosomal_L16 PF00252.13 gi|345004311|ref|YP_004807164.1| - 2.7e-29 101.5 0.0 3.2e-29 101.3 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L16p/L10e PsaD PF02531.11 gi|345004311|ref|YP_004807164.1| - 0.089 12.0 0.0 0.14 11.4 0.0 1.2 1 0 0 1 1 1 0 PsaD DUF91 PF01939.11 gi|345004312|ref|YP_004807165.1| - 7.4e-64 215.0 0.0 8.4e-64 214.8 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF91 ECH PF00378.15 gi|345004314|ref|YP_004807167.1| - 4.6e-50 170.0 0.0 5e-50 169.9 0.0 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase family DoxX_3 PF13781.1 gi|345004315|ref|YP_004807168.1| - 1.1e-05 25.7 2.7 2.3e-05 24.6 0.7 2.1 1 1 1 2 2 2 1 DoxX-like family DoxX PF07681.7 gi|345004315|ref|YP_004807168.1| - 3e-05 24.3 3.5 5.4e-05 23.5 2.4 1.4 1 0 0 1 1 1 1 DoxX DoxX_2 PF13564.1 gi|345004315|ref|YP_004807168.1| - 0.035 14.0 5.2 0.063 13.2 3.6 1.5 1 0 0 1 1 1 0 DoxX-like family MerC PF03203.9 gi|345004315|ref|YP_004807168.1| - 0.13 12.6 1.1 0.17 12.2 0.8 1.3 1 0 0 1 1 1 0 MerC mercury resistance protein DUF308 PF03729.8 gi|345004315|ref|YP_004807168.1| - 0.47 10.4 5.9 1.4 8.9 3.8 2.0 1 1 0 1 1 1 0 Short repeat of unknown function (DUF308) DUF2800 PF10926.3 gi|345004316|ref|YP_004807169.1| - 0.00011 21.4 0.1 0.00015 20.9 0.1 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF2800) OrfB_IS605 PF01385.14 gi|345004317|ref|YP_004807170.1| - 2.7e-26 92.3 1.6 2.7e-26 92.3 1.1 1.7 1 1 1 2 2 2 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|345004317|ref|YP_004807170.1| - 9.9e-22 76.3 0.3 2e-21 75.3 0.2 1.6 1 0 0 1 1 1 1 Putative transposase DNA-binding domain HTH_OrfB_IS605 PF12323.3 gi|345004317|ref|YP_004807170.1| - 1.5e-05 24.2 0.1 3.6e-05 23.0 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain DZR PF12773.2 gi|345004317|ref|YP_004807170.1| - 0.23 11.2 2.9 0.42 10.4 2.0 1.4 1 0 0 1 1 1 0 Double zinc ribbon Zn_Tnp_IS91 PF14319.1 gi|345004317|ref|YP_004807170.1| - 0.47 9.9 3.0 0.25 10.8 0.4 1.8 2 0 0 2 2 2 0 Transposase zinc-binding domain zf-ribbon_3 PF13248.1 gi|345004317|ref|YP_004807170.1| - 1.2 8.4 4.2 4.9 6.4 0.7 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Abhydrolase_9_N PF15420.1 gi|345004318|ref|YP_004807171.1| - 0.01 15.5 0.3 0.05 13.3 0.0 1.8 1 1 1 2 2 2 0 Alpha/beta-hydrolase family N-terminus Aldedh PF00171.17 gi|345004319|ref|YP_004807172.1| - 7.7e-143 476.1 0.0 8.8e-143 475.9 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family LuxC PF05893.9 gi|345004319|ref|YP_004807172.1| - 0.002 16.8 0.0 0.0036 16.0 0.0 1.3 1 0 0 1 1 1 1 Acyl-CoA reductase (LuxC) OmdA PF13376.1 gi|345004319|ref|YP_004807172.1| - 0.033 13.8 0.3 0.07 12.7 0.2 1.5 1 0 0 1 1 1 0 Bacteriocin-protection, YdeI or OmpD-Associated SPOUT_MTase_2 PF14419.1 gi|345004319|ref|YP_004807172.1| - 0.087 12.0 0.0 0.25 10.5 0.0 1.7 2 0 0 2 2 2 0 AF2226-like SPOUT RNA Methylase fused to THUMP RIO1 PF01163.17 gi|345004320|ref|YP_004807173.1| - 3.6e-12 46.0 0.1 5.9e-12 45.3 0.0 1.3 1 0 0 1 1 1 1 RIO1 family APH PF01636.18 gi|345004320|ref|YP_004807173.1| - 1.4e-08 34.7 0.1 0.0013 18.4 0.1 2.3 1 1 1 2 2 2 2 Phosphotransferase enzyme family Kdo PF06293.9 gi|345004320|ref|YP_004807173.1| - 1.1e-06 27.8 0.0 1.8e-06 27.1 0.0 1.3 1 0 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family Pkinase PF00069.20 gi|345004320|ref|YP_004807173.1| - 1.2e-05 24.5 0.0 1.7e-05 24.1 0.0 1.2 1 0 0 1 1 1 1 Protein kinase domain WaaY PF06176.6 gi|345004320|ref|YP_004807173.1| - 0.022 13.9 0.0 0.031 13.4 0.0 1.3 1 0 0 1 1 1 0 Lipopolysaccharide core biosynthesis protein (WaaY) Carb_kinase PF01256.12 gi|345004321|ref|YP_004807174.1| - 4.1e-44 150.6 0.1 6.1e-44 150.1 0.1 1.2 1 0 0 1 1 1 1 Carbohydrate kinase YjeF_N PF03853.10 gi|345004321|ref|YP_004807174.1| - 1.1e-42 145.5 2.4 6.1e-42 143.0 0.2 2.3 2 0 0 2 2 2 1 YjeF-related protein N-terminus Phos_pyr_kin PF08543.7 gi|345004321|ref|YP_004807174.1| - 1.9e-05 23.9 0.0 3.2e-05 23.2 0.0 1.3 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase HK PF02110.10 gi|345004321|ref|YP_004807174.1| - 2.8e-05 23.4 0.1 4.6e-05 22.6 0.0 1.3 1 0 0 1 1 1 1 Hydroxyethylthiazole kinase family MoaC PF01967.16 gi|345004322|ref|YP_004807175.1| - 8.1e-42 142.1 1.9 9.9e-42 141.8 1.3 1.1 1 0 0 1 1 1 1 MoaC family MMR_HSR1 PF01926.18 gi|345004323|ref|YP_004807176.1| - 4.5e-20 71.7 0.0 2.5e-19 69.3 0.0 2.0 2 0 0 2 2 2 1 50S ribosome-binding GTPase GTP_EFTU PF00009.22 gi|345004323|ref|YP_004807176.1| - 4.8e-11 42.4 0.0 1.4e-10 40.9 0.0 1.8 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP-bdg_N PF13167.1 gi|345004323|ref|YP_004807176.1| - 7.8e-11 41.9 0.0 1.6e-10 40.9 0.0 1.5 1 0 0 1 1 1 1 GTP-binding GTPase N-terminal AAA_17 PF13207.1 gi|345004323|ref|YP_004807176.1| - 0.00019 22.2 6.0 0.00045 21.0 0.0 3.2 2 2 1 3 3 3 1 AAA domain Miro PF08477.8 gi|345004323|ref|YP_004807176.1| - 0.0004 20.8 0.0 0.0016 18.9 0.0 2.0 1 1 0 1 1 1 1 Miro-like protein cobW PF02492.14 gi|345004323|ref|YP_004807176.1| - 0.00066 19.1 0.2 0.14 11.6 0.0 2.5 1 1 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain AAA_18 PF13238.1 gi|345004323|ref|YP_004807176.1| - 0.0015 18.8 0.0 0.006 16.8 0.0 2.1 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|345004323|ref|YP_004807176.1| - 0.0071 16.4 0.0 0.02 15.0 0.0 1.7 1 0 0 1 1 1 1 AAA domain PduV-EutP PF10662.4 gi|345004323|ref|YP_004807176.1| - 0.009 15.5 0.0 0.61 9.5 0.0 2.4 2 0 0 2 2 2 1 Ethanolamine utilisation - propanediol utilisation FeoB_N PF02421.13 gi|345004323|ref|YP_004807176.1| - 0.01 15.1 0.1 4.7 6.4 0.0 2.9 4 0 0 4 4 4 1 Ferrous iron transport protein B MobB PF03205.9 gi|345004323|ref|YP_004807176.1| - 0.015 14.9 0.0 0.055 13.1 0.0 2.1 1 1 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B ABC_tran PF00005.22 gi|345004323|ref|YP_004807176.1| - 0.035 14.4 0.0 0.097 12.9 0.0 1.9 1 0 0 1 1 1 0 ABC transporter Arf PF00025.16 gi|345004323|ref|YP_004807176.1| - 0.036 13.3 0.2 3.1 7.0 0.0 2.6 2 1 1 3 3 3 0 ADP-ribosylation factor family Dynamin_N PF00350.18 gi|345004323|ref|YP_004807176.1| - 0.044 13.5 0.5 10 5.9 0.0 2.8 2 1 1 3 3 3 0 Dynamin family AAA_23 PF13476.1 gi|345004323|ref|YP_004807176.1| - 0.054 13.8 0.8 14 5.9 0.0 2.4 2 0 0 2 2 2 0 AAA domain AAA_16 PF13191.1 gi|345004323|ref|YP_004807176.1| - 0.059 13.3 2.9 0.61 10.0 0.0 3.3 2 1 1 4 4 3 0 AAA ATPase domain AAA_33 PF13671.1 gi|345004323|ref|YP_004807176.1| - 0.073 12.9 0.4 0.38 10.6 0.0 2.5 2 2 0 2 2 2 0 AAA domain AAA_14 PF13173.1 gi|345004323|ref|YP_004807176.1| - 0.1 12.5 0.0 0.19 11.6 0.0 1.5 1 0 0 1 1 1 0 AAA domain UPF0079 PF02367.12 gi|345004323|ref|YP_004807176.1| - 0.14 11.7 0.0 0.67 9.5 0.0 2.0 2 0 0 2 2 2 0 Uncharacterised P-loop hydrolase UPF0079 ATP_bind_1 PF03029.12 gi|345004323|ref|YP_004807176.1| - 0.14 11.6 0.4 4.2 6.8 0.0 2.7 2 1 1 3 3 3 0 Conserved hypothetical ATP binding protein DUF258 PF03193.11 gi|345004323|ref|YP_004807176.1| - 0.15 11.2 0.0 0.27 10.4 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function, DUF258 OmpH PF03938.9 gi|345004323|ref|YP_004807176.1| - 0.16 11.8 3.3 57 3.6 0.0 3.3 1 1 0 2 2 2 0 Outer membrane protein (OmpH-like) HEAT_2 PF13646.1 gi|345004324|ref|YP_004807177.1| - 1.7e-20 73.0 13.3 6.5e-12 45.5 3.3 4.5 2 2 2 4 4 4 3 HEAT repeats HEAT_PBS PF03130.11 gi|345004324|ref|YP_004807177.1| - 4.4e-14 51.4 16.9 0.0035 17.6 0.4 7.1 6 1 0 6 6 6 4 PBS lyase HEAT-like repeat HEAT_EZ PF13513.1 gi|345004324|ref|YP_004807177.1| - 7e-06 26.3 10.4 0.00037 20.8 1.7 5.6 5 2 2 7 7 7 2 HEAT-like repeat HEAT PF02985.17 gi|345004324|ref|YP_004807177.1| - 9e-06 25.3 0.1 0.024 14.6 0.0 4.0 3 1 0 3 3 3 1 HEAT repeat Arm PF00514.18 gi|345004324|ref|YP_004807177.1| - 0.0025 17.5 0.0 0.26 11.1 0.0 3.1 2 1 1 3 3 3 1 Armadillo/beta-catenin-like repeat DNA_alkylation PF08713.6 gi|345004324|ref|YP_004807177.1| - 0.0095 15.4 0.1 0.019 14.4 0.0 1.6 1 0 0 1 1 1 1 DNA alkylation repair enzyme DJ-1_PfpI PF01965.19 gi|345004325|ref|YP_004807178.1| - 2.7e-16 59.3 1.5 6.5e-16 58.1 0.8 1.9 1 1 0 1 1 1 1 DJ-1/PfpI family CDP-OH_P_transf PF01066.16 gi|345004326|ref|YP_004807179.1| - 6.8e-09 35.9 5.3 6.8e-09 35.9 3.7 2.3 1 1 1 2 2 2 1 CDP-alcohol phosphatidyltransferase Copper-bind PF00127.15 gi|345004327|ref|YP_004807180.1| - 2.6e-15 56.4 0.0 4.6e-15 55.6 0.0 1.4 1 1 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family Cupredoxin_1 PF13473.1 gi|345004327|ref|YP_004807180.1| - 2.7e-05 23.9 0.0 0.22 11.4 0.1 2.1 2 0 0 2 2 2 2 Cupredoxin-like domain PKD PF00801.15 gi|345004327|ref|YP_004807180.1| - 0.085 12.6 2.7 1.1 9.1 0.1 2.2 1 1 1 2 2 2 0 PKD domain Ribosomal_S3Ae PF01015.13 gi|345004328|ref|YP_004807181.1| - 6.5e-65 218.1 0.1 7.7e-65 217.8 0.1 1.0 1 0 0 1 1 1 1 Ribosomal S3Ae family UPF0146 PF03686.8 gi|345004328|ref|YP_004807181.1| - 0.022 14.5 0.1 0.036 13.8 0.1 1.4 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0146) Gp_UL130 PF11668.3 gi|345004329|ref|YP_004807182.1| - 0.024 14.1 0.1 0.024 14.1 0.1 1.0 1 0 0 1 1 1 0 HCMV glycoprotein pUL130 DUF937 PF06078.6 gi|345004330|ref|YP_004807183.1| - 0.14 12.3 0.1 0.14 12.3 0.1 2.5 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF937) Ribosomal_S15 PF00312.17 gi|345004331|ref|YP_004807184.1| - 5.5e-22 77.3 1.0 8.3e-22 76.7 0.7 1.3 1 0 0 1 1 1 1 Ribosomal protein S15 Ribosomal_S13_N PF08069.7 gi|345004331|ref|YP_004807184.1| - 6.2e-20 70.7 0.0 1e-19 70.1 0.0 1.3 1 0 0 1 1 1 1 Ribosomal S13/S15 N-terminal domain Aldedh PF00171.17 gi|345004333|ref|YP_004807186.1| - 1.8e-139 465.0 0.0 2.3e-139 464.7 0.0 1.1 1 0 0 1 1 1 1 Aldehyde dehydrogenase family LuxC PF05893.9 gi|345004333|ref|YP_004807186.1| - 0.00056 18.7 0.0 0.0023 16.7 0.0 2.0 1 1 0 1 1 1 1 Acyl-CoA reductase (LuxC) Lactonase PF10282.4 gi|345004334|ref|YP_004807187.1| - 0.00013 21.1 0.0 0.00059 19.0 0.0 2.3 2 1 0 2 2 2 1 Lactonase, 7-bladed beta-propeller Na_H_Exchanger PF00999.16 gi|345004335|ref|YP_004807188.1| - 7.8e-47 159.6 50.3 9.8e-47 159.2 34.9 1.1 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family PIRT PF15099.1 gi|345004335|ref|YP_004807188.1| - 2.8 7.1 13.7 2.9 7.1 0.6 3.2 2 1 0 2 2 2 0 Phosphoinositide-interacting protein family Pyr_redox_2 PF07992.9 gi|345004337|ref|YP_004807190.1| - 2.4e-30 105.9 10.2 3.2e-28 98.9 7.0 4.0 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.17 gi|345004337|ref|YP_004807190.1| - 5.2e-23 81.1 0.6 1.1e-22 80.1 0.4 1.6 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox PF00070.22 gi|345004337|ref|YP_004807190.1| - 5e-15 55.6 5.3 3.2e-14 53.0 0.2 2.8 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|345004337|ref|YP_004807190.1| - 4.6e-08 33.3 0.4 2.8e-06 27.5 0.0 2.2 1 1 1 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase K_oxygenase PF13434.1 gi|345004337|ref|YP_004807190.1| - 3.8e-06 26.0 0.0 0.00018 20.5 0.0 2.2 1 1 1 2 2 2 1 L-lysine 6-monooxygenase (NADPH-requiring) GIDA PF01134.17 gi|345004337|ref|YP_004807190.1| - 0.00012 21.1 3.0 0.00036 19.5 0.3 2.2 1 1 1 2 2 2 1 Glucose inhibited division protein A FAD_oxidored PF12831.2 gi|345004337|ref|YP_004807190.1| - 0.0031 16.6 0.7 0.0079 15.3 0.1 1.9 2 0 0 2 2 2 1 FAD dependent oxidoreductase NAD_binding_7 PF13241.1 gi|345004337|ref|YP_004807190.1| - 0.022 14.9 0.2 0.18 12.0 0.0 2.5 2 0 0 2 2 2 0 Putative NAD(P)-binding DAO PF01266.19 gi|345004337|ref|YP_004807190.1| - 0.031 13.1 0.1 0.031 13.1 0.1 3.6 5 0 0 5 5 5 0 FAD dependent oxidoreductase 3HCDH_N PF02737.13 gi|345004337|ref|YP_004807190.1| - 0.82 9.3 7.4 0.42 10.2 0.1 2.8 3 1 0 3 3 3 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain HxlR PF01638.12 gi|345004338|ref|YP_004807191.1| - 2.3e-15 56.0 0.0 2.6e-15 55.8 0.0 1.1 1 0 0 1 1 1 1 HxlR-like helix-turn-helix MarR PF01047.17 gi|345004338|ref|YP_004807191.1| - 6.2e-05 22.6 0.1 0.00016 21.3 0.0 1.7 2 0 0 2 2 2 1 MarR family PadR PF03551.9 gi|345004338|ref|YP_004807191.1| - 0.0023 17.6 0.0 0.0027 17.4 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_20 PF12840.2 gi|345004338|ref|YP_004807191.1| - 0.0047 16.6 0.0 0.0069 16.1 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|345004338|ref|YP_004807191.1| - 0.0091 15.6 0.0 0.014 15.0 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_34 PF13601.1 gi|345004338|ref|YP_004807191.1| - 0.045 13.7 0.0 0.06 13.3 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_24 PF13412.1 gi|345004338|ref|YP_004807191.1| - 0.11 11.8 0.0 0.18 11.1 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Pyr_redox_dim PF02852.17 gi|345004339|ref|YP_004807192.1| - 9.7e-32 109.2 0.6 1.6e-31 108.5 0.4 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox_2 PF07992.9 gi|345004339|ref|YP_004807192.1| - 1.7e-31 109.7 9.7 9.7e-31 107.2 6.7 2.7 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|345004339|ref|YP_004807192.1| - 4.7e-18 65.3 0.4 4.7e-18 65.3 0.3 2.8 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|345004339|ref|YP_004807192.1| - 8.2e-08 32.5 0.0 1.4e-05 25.2 0.0 2.4 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.13 gi|345004339|ref|YP_004807192.1| - 0.0028 17.3 1.3 0.004 16.8 0.2 1.8 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain FAD_oxidored PF12831.2 gi|345004339|ref|YP_004807192.1| - 0.0097 15.0 2.3 0.0097 15.0 1.6 1.6 2 0 0 2 2 2 1 FAD dependent oxidoreductase Thi4 PF01946.12 gi|345004339|ref|YP_004807192.1| - 0.051 12.6 1.3 0.56 9.2 0.0 2.6 3 0 0 3 3 3 0 Thi4 family FAD_binding_2 PF00890.19 gi|345004339|ref|YP_004807192.1| - 0.078 11.8 7.6 0.068 12.0 2.5 2.3 2 0 0 2 2 2 0 FAD binding domain Nitro_FeMo-Co PF02579.12 gi|345004339|ref|YP_004807192.1| - 0.086 12.9 0.5 11 6.1 0.0 3.0 2 0 0 2 2 2 0 Dinitrogenase iron-molybdenum cofactor GIDA PF01134.17 gi|345004339|ref|YP_004807192.1| - 0.1 11.4 7.1 0.017 13.9 1.5 2.2 3 1 0 3 3 3 0 Glucose inhibited division protein A NAD_binding_8 PF13450.1 gi|345004339|ref|YP_004807192.1| - 3.6 7.6 7.2 16 5.6 0.1 2.5 2 0 0 2 2 2 0 NAD(P)-binding Rossmann-like domain SHOCT PF09851.4 gi|345004340|ref|YP_004807193.1| - 2.4e-07 29.9 1.1 3.5e-07 29.4 0.8 1.2 1 0 0 1 1 1 1 Short C-terminal domain DUF1707 PF08044.6 gi|345004340|ref|YP_004807193.1| - 6.4e-05 22.6 0.4 0.00012 21.6 0.3 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF1707) Yip1 PF04893.12 gi|345004340|ref|YP_004807193.1| - 0.0052 16.2 3.6 0.0062 16.0 2.5 1.1 1 0 0 1 1 1 1 Yip1 domain DUF1282 PF06930.7 gi|345004340|ref|YP_004807193.1| - 0.0061 16.2 1.4 0.0071 16.0 1.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1282) DctQ PF04290.7 gi|345004340|ref|YP_004807193.1| - 0.092 12.5 6.2 0.13 12.0 4.3 1.1 1 0 0 1 1 1 0 Tripartite ATP-independent periplasmic transporters, DctQ component NfeD PF01957.13 gi|345004340|ref|YP_004807193.1| - 0.16 12.1 4.0 0.23 11.5 2.7 1.3 1 0 0 1 1 1 0 NfeD-like C-terminal, partner-binding RseC_MucC PF04246.7 gi|345004340|ref|YP_004807193.1| - 2.8 7.4 7.0 3.9 7.0 4.9 1.2 1 0 0 1 1 1 0 Positive regulator of sigma(E), RseC/MucC Pyr_redox_2 PF07992.9 gi|345004341|ref|YP_004807194.1| - 2.4e-38 132.0 0.3 3.3e-38 131.6 0.2 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.17 gi|345004341|ref|YP_004807194.1| - 1.2e-36 125.0 0.1 2.1e-36 124.2 0.1 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox PF00070.22 gi|345004341|ref|YP_004807194.1| - 2.1e-22 79.3 2.6 3.3e-20 72.2 0.0 3.1 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|345004341|ref|YP_004807194.1| - 4.9e-14 52.8 0.0 1.1e-09 38.6 0.0 2.2 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|345004341|ref|YP_004807194.1| - 8.6e-09 34.7 7.4 0.0039 16.1 0.1 3.5 4 0 0 4 4 4 3 FAD dependent oxidoreductase GIDA PF01134.17 gi|345004341|ref|YP_004807194.1| - 4e-07 29.2 1.2 0.0055 15.6 1.3 2.5 2 1 0 2 2 2 2 Glucose inhibited division protein A 3HCDH_N PF02737.13 gi|345004341|ref|YP_004807194.1| - 4e-05 23.3 0.4 0.0056 16.3 0.0 2.5 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_8 PF13450.1 gi|345004341|ref|YP_004807194.1| - 9.2e-05 22.3 5.2 0.042 13.8 0.1 3.2 3 0 0 3 3 3 2 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.19 gi|345004341|ref|YP_004807194.1| - 0.00072 18.5 7.4 0.0019 17.1 0.7 3.2 2 1 1 4 4 4 1 FAD binding domain FAD_oxidored PF12831.2 gi|345004341|ref|YP_004807194.1| - 0.001 18.2 0.3 0.0045 16.1 0.0 2.0 2 0 0 2 2 2 1 FAD dependent oxidoreductase HI0933_like PF03486.9 gi|345004341|ref|YP_004807194.1| - 0.0018 16.8 5.7 0.032 12.7 0.6 3.1 2 1 1 3 3 3 1 HI0933-like protein K_oxygenase PF13434.1 gi|345004341|ref|YP_004807194.1| - 0.012 14.5 0.0 0.02 13.8 0.0 1.4 1 0 0 1 1 1 0 L-lysine 6-monooxygenase (NADPH-requiring) UDPG_MGDP_dh_N PF03721.9 gi|345004341|ref|YP_004807194.1| - 0.012 14.9 4.9 0.035 13.4 0.9 2.7 2 1 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain XdhC_C PF13478.1 gi|345004341|ref|YP_004807194.1| - 0.027 14.7 0.0 0.11 12.8 0.0 2.0 2 0 0 2 2 2 0 XdhC Rossmann domain NAD_Gly3P_dh_N PF01210.18 gi|345004341|ref|YP_004807194.1| - 0.037 13.7 0.3 0.23 11.2 0.0 2.1 2 0 0 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NAD_binding_7 PF13241.1 gi|345004341|ref|YP_004807194.1| - 0.054 13.7 0.1 0.16 12.2 0.0 1.8 2 0 0 2 2 1 0 Putative NAD(P)-binding Thi4 PF01946.12 gi|345004341|ref|YP_004807194.1| - 0.057 12.5 0.1 0.15 11.1 0.1 1.7 1 0 0 1 1 1 0 Thi4 family AlaDh_PNT_C PF01262.16 gi|345004341|ref|YP_004807194.1| - 0.06 12.9 0.1 0.24 10.9 0.0 2.0 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain Lycopene_cycl PF05834.7 gi|345004341|ref|YP_004807194.1| - 0.083 11.7 1.0 0.72 8.6 0.8 2.0 2 0 0 2 2 2 0 Lycopene cyclase protein HTH_20 PF12840.2 gi|345004342|ref|YP_004807195.1| - 1.2e-10 41.0 1.6 2.1e-10 40.2 0.1 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|345004342|ref|YP_004807195.1| - 1.2e-06 28.0 0.1 5.3e-06 25.9 0.1 2.1 1 1 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_12 PF08461.5 gi|345004342|ref|YP_004807195.1| - 0.00042 19.9 0.3 0.001 18.7 0.2 1.7 1 0 0 1 1 1 1 Ribonuclease R winged-helix domain TFIIE_alpha PF02002.12 gi|345004342|ref|YP_004807195.1| - 0.00064 19.1 1.1 0.0092 15.4 0.1 2.2 1 1 0 2 2 2 1 TFIIE alpha subunit FUR PF01475.14 gi|345004342|ref|YP_004807195.1| - 0.0022 17.8 0.1 0.0042 16.9 0.1 1.4 1 0 0 1 1 1 1 Ferric uptake regulator family TrmB PF01978.14 gi|345004342|ref|YP_004807195.1| - 0.0097 15.5 0.0 0.023 14.4 0.0 1.7 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Nop16 PF09420.5 gi|345004342|ref|YP_004807195.1| - 0.012 15.7 0.4 0.019 15.0 0.3 1.4 1 1 0 1 1 1 0 Ribosome biogenesis protein Nop16 DUF1249 PF06853.7 gi|345004342|ref|YP_004807195.1| - 0.022 14.3 0.1 0.028 14.0 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1249) PadR PF03551.9 gi|345004342|ref|YP_004807195.1| - 0.023 14.4 0.1 0.044 13.5 0.1 1.5 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family PqqD PF05402.7 gi|345004342|ref|YP_004807195.1| - 0.03 14.3 2.0 0.092 12.7 0.1 2.3 2 0 0 2 2 2 0 Coenzyme PQQ synthesis protein D (PqqD) Penicillinase_R PF03965.11 gi|345004342|ref|YP_004807195.1| - 0.031 14.3 0.1 0.078 13.0 0.0 1.7 2 0 0 2 2 2 0 Penicillinase repressor HGD-D PF06050.8 gi|345004342|ref|YP_004807195.1| - 0.036 12.8 0.0 0.051 12.3 0.0 1.2 1 0 0 1 1 1 0 2-hydroxyglutaryl-CoA dehydratase, D-component E1-E2_ATPase PF00122.15 gi|345004343|ref|YP_004807196.1| - 9.4e-53 178.6 0.0 2.4e-52 177.2 0.0 1.7 1 0 0 1 1 1 1 E1-E2 ATPase Hydrolase PF00702.21 gi|345004343|ref|YP_004807196.1| - 4.7e-45 154.6 5.9 4.7e-45 154.6 4.1 1.9 3 0 0 3 3 3 1 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|345004343|ref|YP_004807196.1| - 8e-15 55.5 0.1 2e-14 54.1 0.1 1.7 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HMA PF00403.21 gi|345004343|ref|YP_004807196.1| - 2.3e-10 40.4 0.1 8.3e-10 38.6 0.1 2.0 1 0 0 1 1 1 1 Heavy-metal-associated domain Hydrolase_3 PF08282.7 gi|345004343|ref|YP_004807196.1| - 7.9e-06 25.6 1.2 0.00038 20.1 0.7 2.5 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase HMA PF00403.21 gi|345004344|ref|YP_004807197.1| - 2e-13 50.2 0.5 2.2e-13 50.1 0.3 1.0 1 0 0 1 1 1 1 Heavy-metal-associated domain DEDD_Tnp_IS110 PF01548.12 gi|345004344|ref|YP_004807197.1| - 0.086 12.5 0.0 0.086 12.4 0.0 1.0 1 0 0 1 1 1 0 Transposase Yippee-Mis18 PF03226.9 gi|345004344|ref|YP_004807197.1| - 0.14 12.1 0.2 0.27 11.2 0.1 1.4 1 1 0 1 1 1 0 Yippee zinc-binding/DNA-binding /Mis18, centromere assembly Thioredoxin_3 PF13192.1 gi|345004344|ref|YP_004807197.1| - 0.16 11.7 0.5 0.45 10.3 0.2 1.7 1 1 1 2 2 2 0 Thioredoxin domain SapB_1 PF05184.10 gi|345004344|ref|YP_004807197.1| - 0.39 10.5 1.8 16 5.4 0.0 2.1 2 0 0 2 2 2 0 Saposin-like type B, region 1 Phos_pyr_kin PF08543.7 gi|345004345|ref|YP_004807198.1| - 9.9e-84 280.3 4.0 1.3e-83 280.0 2.8 1.1 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase Aldolase_2 PF10120.4 gi|345004345|ref|YP_004807198.1| - 2.8e-47 160.2 0.0 5.6e-47 159.2 0.0 1.5 2 0 0 2 2 2 1 Putative aldolase PfkB PF00294.19 gi|345004345|ref|YP_004807198.1| - 6e-12 45.2 2.9 8e-12 44.8 2.0 1.2 1 0 0 1 1 1 1 pfkB family carbohydrate kinase HK PF02110.10 gi|345004345|ref|YP_004807198.1| - 0.00056 19.1 1.4 0.0068 15.6 1.0 2.0 1 1 0 1 1 1 1 Hydroxyethylthiazole kinase family TENA_THI-4 PF03070.11 gi|345004346|ref|YP_004807199.1| - 6.6e-48 163.2 0.0 7.5e-48 163.0 0.0 1.0 1 0 0 1 1 1 1 TENA/THI-4/PQQC family CobA_CobO_BtuR PF02572.10 gi|345004347|ref|YP_004807200.1| - 1.8e-12 47.2 0.0 2.7e-12 46.6 0.0 1.3 1 0 0 1 1 1 1 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP TENA_THI-4 PF03070.11 gi|345004347|ref|YP_004807200.1| - 1.9e-12 47.3 0.0 2.5e-12 46.9 0.0 1.1 1 0 0 1 1 1 1 TENA/THI-4/PQQC family GATase_3 PF07685.9 gi|345004348|ref|YP_004807201.1| - 4.3e-35 120.6 0.0 6.7e-35 120.0 0.0 1.3 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain CbiA PF01656.18 gi|345004348|ref|YP_004807201.1| - 3.6e-23 81.9 0.0 5.3e-23 81.4 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_26 PF13500.1 gi|345004348|ref|YP_004807201.1| - 2.2e-11 43.7 0.0 5.7e-11 42.4 0.0 1.7 1 1 0 1 1 1 1 AAA domain MobB PF03205.9 gi|345004348|ref|YP_004807201.1| - 0.0034 17.1 0.0 0.53 9.9 0.0 2.4 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B NTPase_1 PF03266.10 gi|345004348|ref|YP_004807201.1| - 0.026 14.2 0.1 0.055 13.1 0.0 1.6 2 0 0 2 2 2 0 NTPase GATase PF00117.23 gi|345004348|ref|YP_004807201.1| - 0.19 11.1 0.0 0.32 10.3 0.0 1.3 1 0 0 1 1 1 0 Glutamine amidotransferase class-I DUF1611 PF07755.6 gi|345004348|ref|YP_004807201.1| - 0.39 9.3 2.8 12 4.4 0.1 3.3 4 0 0 4 4 4 0 Protein of unknown function (DUF1611) Pyr_redox_2 PF07992.9 gi|345004349|ref|YP_004807202.1| - 2.1e-12 47.3 0.5 1.9e-11 44.2 0.1 2.0 1 1 1 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|345004349|ref|YP_004807202.1| - 1.5e-11 43.8 0.2 3.6e-05 22.8 0.0 2.1 1 1 1 2 2 2 2 FAD dependent oxidoreductase HI0933_like PF03486.9 gi|345004349|ref|YP_004807202.1| - 2.5e-09 36.1 0.1 4.3e-05 22.1 0.0 2.2 1 1 1 2 2 2 2 HI0933-like protein Pyr_redox_3 PF13738.1 gi|345004349|ref|YP_004807202.1| - 3.7e-07 30.3 0.6 0.0012 18.9 0.1 2.1 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.17 gi|345004349|ref|YP_004807202.1| - 5.9e-07 28.6 0.1 5.5e-05 22.2 0.0 2.1 1 1 1 2 2 2 2 Glucose inhibited division protein A FAD_binding_2 PF00890.19 gi|345004349|ref|YP_004807202.1| - 1.8e-06 27.0 0.7 2.4e-05 23.3 0.0 2.1 1 1 1 2 2 2 1 FAD binding domain NAD_binding_9 PF13454.1 gi|345004349|ref|YP_004807202.1| - 2.4e-06 27.4 0.2 0.0047 16.6 0.1 2.4 2 0 0 2 2 2 2 FAD-NAD(P)-binding NAD_binding_8 PF13450.1 gi|345004349|ref|YP_004807202.1| - 3.8e-06 26.8 0.1 3e-05 23.9 0.0 2.5 2 1 1 3 3 3 1 NAD(P)-binding Rossmann-like domain FAD_binding_3 PF01494.14 gi|345004349|ref|YP_004807202.1| - 3.9e-06 26.1 0.3 0.00025 20.2 0.0 2.1 2 0 0 2 2 2 1 FAD binding domain Thi4 PF01946.12 gi|345004349|ref|YP_004807202.1| - 1.7e-05 24.0 0.1 8.1e-05 21.8 0.0 1.9 2 0 0 2 2 2 1 Thi4 family FAD_oxidored PF12831.2 gi|345004349|ref|YP_004807202.1| - 0.00027 20.1 0.1 0.00062 18.9 0.0 1.6 2 0 0 2 2 2 1 FAD dependent oxidoreductase K_oxygenase PF13434.1 gi|345004349|ref|YP_004807202.1| - 0.0037 16.2 0.1 0.57 9.0 0.0 2.1 2 0 0 2 2 2 2 L-lysine 6-monooxygenase (NADPH-requiring) Lycopene_cycl PF05834.7 gi|345004349|ref|YP_004807202.1| - 0.0041 16.1 0.2 0.13 11.1 0.0 2.0 1 1 1 2 2 2 1 Lycopene cyclase protein Trp_halogenase PF04820.9 gi|345004349|ref|YP_004807202.1| - 0.0047 15.6 1.1 0.52 8.8 0.2 2.1 2 0 0 2 2 2 2 Tryptophan halogenase Pyr_redox PF00070.22 gi|345004349|ref|YP_004807202.1| - 0.0061 16.9 0.1 0.016 15.6 0.0 1.7 2 0 0 2 2 1 1 Pyridine nucleotide-disulphide oxidoreductase Acetyltransf_2 PF00797.12 gi|345004350|ref|YP_004807203.1| - 7.3e-27 94.4 0.0 8.8e-27 94.2 0.0 1.1 1 0 0 1 1 1 1 N-acetyltransferase Rubredoxin PF00301.15 gi|345004351|ref|YP_004807204.1| - 0.0074 16.1 0.5 0.0094 15.8 0.4 1.3 1 0 0 1 1 1 1 Rubredoxin A2L_zn_ribbon PF08792.5 gi|345004351|ref|YP_004807204.1| - 0.029 13.8 1.0 0.044 13.2 0.7 1.3 1 0 0 1 1 1 0 A2L zinc ribbon domain DUF4428 PF14471.1 gi|345004351|ref|YP_004807204.1| - 0.1 12.3 1.5 0.15 11.8 1.1 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4428) zf-C2H2_6 PF13912.1 gi|345004351|ref|YP_004807204.1| - 0.25 11.2 2.3 0.37 10.7 1.6 1.3 1 0 0 1 1 1 0 C2H2-type zinc finger Cons_hypoth698 PF03601.9 gi|345004352|ref|YP_004807205.1| - 3.7e-62 209.7 22.0 4.6e-62 209.4 15.2 1.1 1 0 0 1 1 1 1 Conserved hypothetical protein 698 adh_short_C2 PF13561.1 gi|345004353|ref|YP_004807206.1| - 8.8e-24 84.5 0.0 1e-23 84.3 0.0 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.20 gi|345004353|ref|YP_004807206.1| - 5.4e-19 68.7 0.8 6.9e-19 68.3 0.6 1.2 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.5 gi|345004353|ref|YP_004807206.1| - 7e-10 38.8 0.2 1.1e-09 38.2 0.2 1.3 1 0 0 1 1 1 1 KR domain Adenine_deam_C PF13382.1 gi|345004353|ref|YP_004807206.1| - 0.0097 15.0 0.8 0.018 14.2 0.5 1.4 1 0 0 1 1 1 1 Adenine deaminase C-terminal domain NAD_binding_10 PF13460.1 gi|345004353|ref|YP_004807206.1| - 0.03 14.3 0.3 0.05 13.6 0.2 1.4 1 0 0 1 1 1 0 NADH(P)-binding GARS_N PF02844.10 gi|345004353|ref|YP_004807206.1| - 0.041 14.3 0.2 0.73 10.3 0.0 2.2 2 0 0 2 2 2 0 Phosphoribosylglycinamide synthetase, N domain Glycos_transf_2 PF00535.21 gi|345004354|ref|YP_004807207.1| - 3.9e-19 68.9 0.0 4.9e-19 68.6 0.0 1.1 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|345004354|ref|YP_004807207.1| - 0.00051 19.9 0.1 0.00074 19.3 0.0 1.4 1 1 0 1 1 1 1 Glycosyltransferase like family 2 PMT_2 PF13231.1 gi|345004355|ref|YP_004807208.1| - 5.2e-09 36.1 7.9 5.2e-09 36.1 5.5 2.4 3 0 0 3 3 3 1 Dolichyl-phosphate-mannose-protein mannosyltransferase Oleosin PF01277.12 gi|345004355|ref|YP_004807208.1| - 0.024 14.2 0.9 0.15 11.6 0.6 2.5 1 0 0 1 1 1 0 Oleosin STT3 PF02516.9 gi|345004355|ref|YP_004807208.1| - 1.2 7.9 8.0 0.56 9.1 3.8 1.6 2 0 0 2 2 2 0 Oligosaccharyl transferase STT3 subunit PMT PF02366.13 gi|345004355|ref|YP_004807208.1| - 6.3 6.0 10.4 16 4.7 4.5 2.2 2 0 0 2 2 2 0 Dolichyl-phosphate-mannose-protein mannosyltransferase ABC_tran PF00005.22 gi|345004356|ref|YP_004807209.1| - 6.2e-35 120.4 0.0 1.1e-34 119.7 0.0 1.4 1 0 0 1 1 1 1 ABC transporter TOBE_2 PF08402.5 gi|345004356|ref|YP_004807209.1| - 1e-11 44.6 0.5 1e-11 44.6 0.3 2.2 2 0 0 2 2 2 1 TOBE domain AAA_21 PF13304.1 gi|345004356|ref|YP_004807209.1| - 3.2e-07 30.5 0.0 0.00087 19.3 0.0 2.1 1 1 0 2 2 2 2 AAA domain Rad17 PF03215.10 gi|345004356|ref|YP_004807209.1| - 0.0023 16.6 0.0 0.0034 16.1 0.0 1.1 1 0 0 1 1 1 1 Rad17 cell cycle checkpoint protein AAA_22 PF13401.1 gi|345004356|ref|YP_004807209.1| - 0.0027 17.8 0.0 0.0067 16.5 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA PF00004.24 gi|345004356|ref|YP_004807209.1| - 0.0057 16.8 0.0 0.071 13.3 0.0 2.2 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.1 gi|345004356|ref|YP_004807209.1| - 0.0086 16.0 0.4 0.019 14.9 0.2 1.7 1 1 0 1 1 1 1 AAA ATPase domain SbcCD_C PF13558.1 gi|345004356|ref|YP_004807209.1| - 0.029 14.2 0.2 0.2 11.5 0.1 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_19 PF13245.1 gi|345004356|ref|YP_004807209.1| - 0.052 13.2 0.1 0.14 11.8 0.1 1.8 1 0 0 1 1 1 0 Part of AAA domain AAA_33 PF13671.1 gi|345004356|ref|YP_004807209.1| - 0.07 13.0 0.1 0.21 11.4 0.1 1.9 1 1 0 1 1 1 0 AAA domain AAA_29 PF13555.1 gi|345004356|ref|YP_004807209.1| - 0.11 12.0 0.0 0.23 11.0 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain DUF258 PF03193.11 gi|345004356|ref|YP_004807209.1| - 0.11 11.6 0.0 0.2 10.8 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_15 PF13175.1 gi|345004356|ref|YP_004807209.1| - 0.13 11.2 0.0 0.35 9.8 0.0 1.6 2 0 0 2 2 2 0 AAA ATPase domain BPD_transp_1 PF00528.17 gi|345004357|ref|YP_004807210.1| - 6.3e-23 81.2 34.6 2e-14 53.5 3.9 3.3 2 1 1 3 3 3 2 Binding-protein-dependent transport system inner membrane component SBP_bac_6 PF13343.1 gi|345004358|ref|YP_004807211.1| - 2.1e-16 60.0 0.0 2.6e-16 59.6 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.1 gi|345004358|ref|YP_004807211.1| - 7.4e-10 38.8 3.2 1.3e-09 38.0 2.2 1.4 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.20 gi|345004358|ref|YP_004807211.1| - 1.9e-07 31.1 2.6 1.9e-06 27.8 1.8 2.0 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.1 gi|345004358|ref|YP_004807211.1| - 5.1e-07 29.6 2.8 1.1e-06 28.5 1.9 1.6 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein TAT_signal PF10518.4 gi|345004358|ref|YP_004807211.1| - 0.011 15.6 2.1 0.011 15.6 1.5 3.3 3 0 0 3 3 3 0 TAT (twin-arginine translocation) pathway signal sequence RGP PF03214.8 gi|345004359|ref|YP_004807212.1| - 1.3e-14 53.7 0.0 1.8e-14 53.2 0.0 1.2 1 0 0 1 1 1 1 Reversibly glycosylated polypeptide Glyco_tranf_2_3 PF13641.1 gi|345004359|ref|YP_004807212.1| - 0.2 11.4 1.2 1.9 8.1 0.8 2.5 1 1 0 1 1 1 0 Glycosyltransferase like family 2 GMC_oxred_C PF05199.8 gi|345004360|ref|YP_004807213.1| - 1e-19 71.2 1.3 3.8e-19 69.4 0.9 2.0 1 1 0 1 1 1 1 GMC oxidoreductase GMC_oxred_N PF00732.14 gi|345004360|ref|YP_004807213.1| - 2.1e-14 53.3 0.0 3.4e-14 52.7 0.0 1.4 1 0 0 1 1 1 1 GMC oxidoreductase DAO PF01266.19 gi|345004360|ref|YP_004807213.1| - 1.5e-11 43.8 0.2 1.5e-05 24.0 0.0 2.5 2 0 0 2 2 2 2 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|345004360|ref|YP_004807213.1| - 5.1e-08 32.1 3.4 0.0027 16.6 0.9 2.2 2 0 0 2 2 2 2 FAD binding domain NAD_binding_8 PF13450.1 gi|345004360|ref|YP_004807213.1| - 2.8e-06 27.2 0.2 1e-05 25.4 0.1 2.0 2 0 0 2 2 1 1 NAD(P)-binding Rossmann-like domain FAD_binding_3 PF01494.14 gi|345004360|ref|YP_004807213.1| - 5.9e-06 25.5 1.5 8.5e-05 21.7 0.1 2.1 2 0 0 2 2 2 1 FAD binding domain HI0933_like PF03486.9 gi|345004360|ref|YP_004807213.1| - 8.6e-06 24.4 0.9 0.0003 19.3 0.5 2.1 2 0 0 2 2 2 1 HI0933-like protein Pyr_redox_3 PF13738.1 gi|345004360|ref|YP_004807213.1| - 9e-06 25.8 0.1 0.00049 20.2 0.0 2.5 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_2 PF07992.9 gi|345004360|ref|YP_004807213.1| - 1.1e-05 25.4 0.0 0.0057 16.5 0.0 2.3 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.7 gi|345004360|ref|YP_004807213.1| - 0.0002 20.4 0.1 0.0003 19.8 0.1 1.2 1 0 0 1 1 1 1 Lycopene cyclase protein ApbA PF02558.11 gi|345004360|ref|YP_004807213.1| - 0.00042 19.7 0.2 0.00091 18.6 0.0 1.7 2 0 0 2 2 2 1 Ketopantoate reductase PanE/ApbA Pyr_redox PF00070.22 gi|345004360|ref|YP_004807213.1| - 0.0007 19.9 0.0 0.012 16.0 0.0 2.5 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Fer4_7 PF12838.2 gi|345004360|ref|YP_004807213.1| - 0.005 17.2 2.0 0.014 15.7 1.2 1.9 2 0 0 2 2 1 1 4Fe-4S dicluster domain Thi4 PF01946.12 gi|345004360|ref|YP_004807213.1| - 0.018 14.1 0.0 0.032 13.3 0.0 1.4 1 0 0 1 1 1 0 Thi4 family NAD_binding_10 PF13460.1 gi|345004360|ref|YP_004807213.1| - 0.018 15.0 0.5 0.45 10.4 0.1 2.3 2 0 0 2 2 2 0 NADH(P)-binding GIDA PF01134.17 gi|345004360|ref|YP_004807213.1| - 0.021 13.6 0.3 0.14 11.0 0.1 2.1 2 0 0 2 2 2 0 Glucose inhibited division protein A UDPG_MGDP_dh_N PF03721.9 gi|345004360|ref|YP_004807213.1| - 0.025 13.9 0.2 0.041 13.2 0.2 1.3 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Fer4_8 PF13183.1 gi|345004360|ref|YP_004807213.1| - 0.03 14.3 0.1 0.062 13.3 0.1 1.5 1 0 0 1 1 1 0 4Fe-4S dicluster domain NAD_binding_9 PF13454.1 gi|345004360|ref|YP_004807213.1| - 0.039 13.7 1.5 1.4 8.6 0.0 2.3 2 0 0 2 2 2 0 FAD-NAD(P)-binding 3HCDH_N PF02737.13 gi|345004360|ref|YP_004807213.1| - 0.044 13.4 0.0 0.069 12.7 0.0 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Fer4_17 PF13534.1 gi|345004360|ref|YP_004807213.1| - 0.045 14.0 0.1 0.098 13.0 0.0 1.5 1 0 0 1 1 1 0 4Fe-4S dicluster domain TrkA_N PF02254.13 gi|345004360|ref|YP_004807213.1| - 0.049 13.6 0.0 0.25 11.3 0.0 2.2 2 0 0 2 2 2 0 TrkA-N domain NAD_binding_7 PF13241.1 gi|345004360|ref|YP_004807213.1| - 0.15 12.3 0.0 0.28 11.4 0.0 1.4 1 0 0 1 1 1 0 Putative NAD(P)-binding K_oxygenase PF13434.1 gi|345004360|ref|YP_004807213.1| - 0.15 10.9 0.0 16 4.3 0.0 2.3 2 0 0 2 2 2 0 L-lysine 6-monooxygenase (NADPH-requiring) Fer4_21 PF14697.1 gi|345004360|ref|YP_004807213.1| - 0.18 11.6 0.9 0.39 10.6 0.6 1.5 1 0 0 1 1 1 0 4Fe-4S dicluster domain Fer4 PF00037.22 gi|345004360|ref|YP_004807213.1| - 0.32 10.6 3.0 0.28 10.8 0.8 1.9 2 0 0 2 2 1 0 4Fe-4S binding domain Gluconate_2-dh3 PF13618.1 gi|345004361|ref|YP_004807214.1| - 3.7e-11 43.2 0.0 4.8e-11 42.9 0.0 1.1 1 0 0 1 1 1 1 Gluconate 2-dehydrogenase subunit 3 TAT_signal PF10518.4 gi|345004361|ref|YP_004807214.1| - 5.1 7.3 8.7 0.14 12.2 0.9 2.2 2 0 0 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence DUF2157 PF09925.4 gi|345004362|ref|YP_004807215.1| - 6.1 6.4 11.0 0.13 11.8 0.7 2.8 1 1 2 3 3 3 0 Predicted membrane protein (DUF2157) Thioredoxin_4 PF13462.1 gi|345004363|ref|YP_004807216.1| - 2.6e-23 82.7 0.0 3.3e-23 82.5 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.1 gi|345004363|ref|YP_004807216.1| - 3.6e-11 43.2 0.0 7.2e-11 42.2 0.0 1.5 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_5 PF13743.1 gi|345004363|ref|YP_004807216.1| - 1.7e-06 27.7 0.6 2.1e-05 24.1 0.1 2.0 2 0 0 2 2 2 1 Thioredoxin DSBA PF01323.15 gi|345004363|ref|YP_004807216.1| - 0.00017 21.2 1.0 0.00058 19.4 0.2 1.9 1 1 1 2 2 2 1 DSBA-like thioredoxin domain Thioredoxin PF00085.15 gi|345004363|ref|YP_004807216.1| - 0.0047 16.5 0.0 0.027 14.1 0.0 2.0 2 0 0 2 2 2 1 Thioredoxin FAA_hydrolase PF01557.13 gi|345004364|ref|YP_004807217.1| - 2.7e-51 174.1 0.1 4e-51 173.5 0.1 1.2 1 0 0 1 1 1 1 Fumarylacetoacetate (FAA) hydrolase family MFS_1 PF07690.11 gi|345004365|ref|YP_004807218.1| - 1.5e-38 132.3 73.4 6.6e-34 117.1 28.2 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily GFO_IDH_MocA PF01408.17 gi|345004366|ref|YP_004807219.1| - 5.8e-26 91.3 0.9 9.3e-26 90.7 0.6 1.3 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold F420_oxidored PF03807.12 gi|345004366|ref|YP_004807219.1| - 6.7e-08 32.8 0.0 1.4e-07 31.8 0.0 1.5 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent Saccharop_dh PF03435.13 gi|345004366|ref|YP_004807219.1| - 0.00017 20.7 0.1 0.00031 19.8 0.1 1.4 1 0 0 1 1 1 1 Saccharopine dehydrogenase Semialdhyde_dh PF01118.19 gi|345004366|ref|YP_004807219.1| - 0.00042 20.5 0.1 0.00087 19.5 0.1 1.5 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain NAD_binding_2 PF03446.10 gi|345004366|ref|YP_004807219.1| - 0.0051 16.6 0.1 0.0079 16.0 0.1 1.3 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase CoA_binding PF02629.14 gi|345004366|ref|YP_004807219.1| - 0.017 15.5 0.6 0.064 13.7 0.1 2.1 2 0 0 2 2 2 0 CoA binding domain NAD_binding_3 PF03447.11 gi|345004366|ref|YP_004807219.1| - 0.033 14.6 0.4 0.11 12.9 0.3 1.9 2 0 0 2 2 2 0 Homoserine dehydrogenase, NAD binding domain CoA_binding_2 PF13380.1 gi|345004366|ref|YP_004807219.1| - 0.094 12.8 0.4 0.19 11.9 0.1 1.6 2 0 0 2 2 2 0 CoA binding domain DUF2427 PF10348.4 gi|345004367|ref|YP_004807220.1| - 0.017 14.6 0.9 0.021 14.3 0.6 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF2427) DUF998 PF06197.8 gi|345004367|ref|YP_004807220.1| - 0.08 12.2 5.6 0.084 12.1 3.9 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF998) zf-ribbon_3 PF13248.1 gi|345004368|ref|YP_004807221.1| - 2.4e-06 26.5 0.8 3.7e-06 25.9 0.5 1.3 1 0 0 1 1 1 1 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|345004368|ref|YP_004807221.1| - 0.0002 20.7 0.7 0.00033 20.0 0.5 1.3 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.2 gi|345004368|ref|YP_004807221.1| - 0.00025 20.8 1.0 0.00038 20.1 0.7 1.2 1 0 0 1 1 1 1 Double zinc ribbon TF_Zn_Ribbon PF08271.7 gi|345004368|ref|YP_004807221.1| - 0.00026 20.2 3.2 0.058 12.7 0.2 2.6 2 0 0 2 2 2 2 TFIIB zinc-binding UPF0547 PF10571.4 gi|345004368|ref|YP_004807221.1| - 0.0052 16.4 2.6 0.0096 15.5 1.8 1.4 1 0 0 1 1 1 1 Uncharacterised protein family UPF0547 Cyto_ox_2 PF02322.10 gi|345004368|ref|YP_004807221.1| - 0.006 15.7 0.1 0.0071 15.5 0.1 1.0 1 0 0 1 1 1 1 Cytochrome oxidase subunit II TM2 PF05154.11 gi|345004368|ref|YP_004807221.1| - 0.0066 16.6 1.2 0.0097 16.1 0.8 1.2 1 0 0 1 1 1 1 TM2 domain HypA PF01155.14 gi|345004368|ref|YP_004807221.1| - 0.0088 15.7 0.2 0.015 14.9 0.1 1.4 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family DUF35_N PF12172.3 gi|345004368|ref|YP_004807221.1| - 0.014 15.3 2.2 0.026 14.4 1.5 1.4 1 0 0 1 1 1 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Prim_Zn_Ribbon PF08273.7 gi|345004368|ref|YP_004807221.1| - 0.041 13.9 2.6 5.4 7.1 0.2 2.3 2 0 0 2 2 2 0 Zinc-binding domain of primase-helicase SHR3_chaperone PF08229.6 gi|345004368|ref|YP_004807221.1| - 0.14 11.1 0.0 0.16 10.9 0.0 1.1 1 0 0 1 1 1 0 ER membrane protein SH3 DUF4234 PF14018.1 gi|345004368|ref|YP_004807221.1| - 0.28 10.9 1.5 1.2 8.8 1.2 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF4234) RRN7 PF11781.3 gi|345004368|ref|YP_004807221.1| - 5.4 6.6 6.1 6 6.4 0.3 2.2 1 1 1 2 2 2 0 RNA polymerase I-specific transcription initiation factor Rrn7 MFS_1 PF07690.11 gi|345004369|ref|YP_004807222.1| - 1e-15 57.3 38.7 1.6e-14 53.4 19.1 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.2 gi|345004369|ref|YP_004807222.1| - 9.2e-05 22.1 0.1 9.2e-05 22.1 0.1 3.4 2 1 1 3 3 3 1 MFS_1 like family DUF4131 PF13567.1 gi|345004369|ref|YP_004807222.1| - 0.21 10.9 0.1 0.21 10.9 0.0 4.0 1 1 2 3 3 3 0 Domain of unknown function (DUF4131) MatE PF01554.13 gi|345004371|ref|YP_004807224.1| - 1.4e-47 161.2 30.6 1.4e-27 96.2 6.3 2.9 2 1 1 3 3 3 2 MatE Polysacc_synt_C PF14667.1 gi|345004371|ref|YP_004807224.1| - 7.6e-10 38.7 13.2 3.7e-09 36.5 5.2 4.5 4 1 0 4 4 4 2 Polysaccharide biosynthesis C-terminal domain MVIN PF03023.9 gi|345004371|ref|YP_004807224.1| - 6e-09 34.8 15.0 1.8e-08 33.2 3.6 2.7 2 1 0 2 2 2 2 MviN-like protein DUF3341 PF11821.3 gi|345004371|ref|YP_004807224.1| - 0.049 13.0 1.7 0.088 12.2 0.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3341) DUF3717 PF12512.3 gi|345004371|ref|YP_004807224.1| - 0.063 12.9 0.5 0.71 9.5 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3717) DUF3437 PF11919.3 gi|345004371|ref|YP_004807224.1| - 0.096 12.4 0.1 0.47 10.2 0.0 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF3437) Peptidase_M50 PF02163.17 gi|345004372|ref|YP_004807225.1| - 2.5e-24 85.3 10.1 1.7e-17 63.0 3.2 2.5 2 1 1 3 3 3 2 Peptidase family M50 CBS PF00571.23 gi|345004372|ref|YP_004807225.1| - 1.4e-11 43.9 1.0 2.2e-06 27.3 0.1 2.6 2 0 0 2 2 2 2 CBS domain Usp PF00582.21 gi|345004373|ref|YP_004807226.1| - 6.3e-29 100.9 2.2 7.5e-29 100.7 1.6 1.1 1 0 0 1 1 1 1 Universal stress protein family DUF2391 PF09622.5 gi|345004374|ref|YP_004807227.1| - 3e-05 23.3 8.7 3.8e-05 22.9 0.6 2.4 2 1 0 2 2 2 2 Putative integral membrane protein (DUF2391) NMN_transporter PF04973.7 gi|345004374|ref|YP_004807227.1| - 1.5 8.2 11.4 2.8 7.3 1.6 2.2 2 0 0 2 2 2 0 Nicotinamide mononucleotide transporter Mac PF12464.3 gi|345004375|ref|YP_004807228.1| - 0.0088 16.0 0.1 0.041 13.8 0.0 2.1 1 1 0 1 1 1 1 Maltose acetyltransferase HTH_Tnp_Tc5 PF03221.11 gi|345004375|ref|YP_004807228.1| - 0.009 15.8 0.0 0.013 15.3 0.0 1.2 1 0 0 1 1 1 1 Tc5 transposase DNA-binding domain DUF2238 PF09997.4 gi|345004376|ref|YP_004807229.1| - 2.7e-06 26.8 2.3 5.7e-05 22.5 0.9 2.4 2 1 0 2 2 2 1 Predicted membrane protein (DUF2238) DUF486 PF04342.7 gi|345004376|ref|YP_004807229.1| - 0.025 14.6 0.5 0.1 12.6 0.0 2.2 2 1 1 3 3 3 0 Protein of unknown function, DUF486 Cortexin PF11057.3 gi|345004376|ref|YP_004807229.1| - 0.086 12.4 0.3 1.7 8.2 0.1 2.3 2 0 0 2 2 2 0 Cortexin of kidney Orai-1 PF07856.7 gi|345004377|ref|YP_004807230.1| - 0.026 14.0 3.6 2 7.9 0.0 2.3 2 0 0 2 2 2 0 Mediator of CRAC channel activity DUF373 PF04123.8 gi|345004377|ref|YP_004807230.1| - 0.2 10.6 11.1 0.92 8.4 7.7 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF373) Spore_YabQ PF09578.5 gi|345004377|ref|YP_004807230.1| - 0.45 10.4 0.1 0.45 10.4 0.1 3.2 3 1 1 4 4 4 0 Spore cortex protein YabQ (Spore_YabQ) FtsX PF02687.16 gi|345004377|ref|YP_004807230.1| - 0.9 9.3 0.0 0.9 9.3 0.0 3.2 2 1 1 3 3 3 0 FtsX-like permease family Hydrolase PF00702.21 gi|345004378|ref|YP_004807231.1| - 2.6e-38 132.6 5.2 2.6e-38 132.6 3.6 3.1 2 1 0 2 2 2 1 haloacid dehalogenase-like hydrolase E1-E2_ATPase PF00122.15 gi|345004378|ref|YP_004807231.1| - 2.3e-29 102.0 2.8 2.3e-29 102.0 1.9 1.9 2 0 0 2 2 2 1 E1-E2 ATPase HAD PF12710.2 gi|345004378|ref|YP_004807231.1| - 2.4e-12 47.4 0.5 1.6e-11 44.7 0.1 2.5 2 1 0 2 2 2 1 haloacid dehalogenase-like hydrolase HMA PF00403.21 gi|345004378|ref|YP_004807231.1| - 1.2e-06 28.5 0.0 4.7e-06 26.6 0.0 2.1 1 0 0 1 1 1 1 Heavy-metal-associated domain Hydrolase_3 PF08282.7 gi|345004378|ref|YP_004807231.1| - 0.0023 17.5 0.1 0.0056 16.2 0.1 1.5 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase DUF329 PF03884.9 gi|345004378|ref|YP_004807231.1| - 0.11 12.1 1.1 0.2 11.2 0.7 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF329) DUF581 PF04570.9 gi|345004378|ref|YP_004807231.1| - 0.34 10.2 2.4 0.72 9.1 1.7 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF581) AAA_13 PF13166.1 gi|345004380|ref|YP_004807233.1| - 4.6e-05 22.1 21.2 0.00041 18.9 3.8 2.6 2 0 0 2 2 2 2 AAA domain GAS PF13851.1 gi|345004380|ref|YP_004807233.1| - 0.00052 19.2 46.2 0.0071 15.5 12.9 3.7 2 2 2 4 4 4 2 Growth-arrest specific micro-tubule binding IncA PF04156.9 gi|345004380|ref|YP_004807233.1| - 0.0019 17.8 73.5 0.033 13.7 8.7 4.4 2 2 1 3 3 3 2 IncA protein BLOC1_2 PF10046.4 gi|345004380|ref|YP_004807233.1| - 0.0049 16.9 2.7 0.0049 16.9 1.8 5.2 4 2 2 6 6 6 1 Biogenesis of lysosome-related organelles complex-1 subunit 2 Baculo_PEP_C PF04513.7 gi|345004380|ref|YP_004807233.1| - 0.038 13.8 13.2 2 8.2 0.2 4.1 3 1 2 5 5 5 0 Baculovirus polyhedron envelope protein, PEP, C terminus Reo_sigmaC PF04582.7 gi|345004380|ref|YP_004807233.1| - 0.075 12.2 10.7 0.14 11.3 0.4 3.8 3 2 2 5 5 5 0 Reovirus sigma C capsid protein FlaC_arch PF05377.6 gi|345004380|ref|YP_004807233.1| - 0.08 12.8 0.4 0.08 12.8 0.2 6.7 6 1 0 6 6 6 0 Flagella accessory protein C (FlaC) IFT57 PF10498.4 gi|345004380|ref|YP_004807233.1| - 0.11 11.2 27.9 0.12 11.0 5.5 2.5 2 1 0 2 2 2 0 Intra-flagellar transport protein 57 AAA_23 PF13476.1 gi|345004380|ref|YP_004807233.1| - 0.23 11.7 53.5 1.5e+04 -9.8 37.1 5.1 1 1 0 1 1 0 0 AAA domain NPV_P10 PF05531.7 gi|345004380|ref|YP_004807233.1| - 0.36 11.1 17.4 14 5.9 0.3 5.8 3 2 2 5 5 5 0 Nucleopolyhedrovirus P10 protein DUF3450 PF11932.3 gi|345004380|ref|YP_004807233.1| - 0.58 9.3 36.4 0.56 9.4 3.2 5.1 2 2 2 5 5 5 0 Protein of unknown function (DUF3450) TBPIP PF07106.8 gi|345004380|ref|YP_004807233.1| - 0.86 9.1 41.5 0.059 12.9 3.0 4.5 2 2 2 4 4 4 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) Mnd1 PF03962.10 gi|345004380|ref|YP_004807233.1| - 1 9.0 50.2 0.75 9.4 9.6 4.6 2 2 3 5 5 5 0 Mnd1 family DUF342 PF03961.8 gi|345004380|ref|YP_004807233.1| - 1.4 7.2 33.2 0.24 9.7 2.1 4.1 1 1 2 4 4 4 0 Protein of unknown function (DUF342) Prefoldin_2 PF01920.15 gi|345004380|ref|YP_004807233.1| - 5 6.9 50.6 0.66 9.7 0.4 8.3 4 3 2 6 6 6 0 Prefoldin subunit DUF1664 PF07889.7 gi|345004380|ref|YP_004807233.1| - 5.3 6.8 26.5 4.8 7.0 0.8 5.5 3 2 2 5 5 5 0 Protein of unknown function (DUF1664) Atg14 PF10186.4 gi|345004380|ref|YP_004807233.1| - 6 5.7 48.4 1.3 7.9 7.4 4.1 2 2 1 3 3 3 0 UV radiation resistance protein and autophagy-related subunit 14 Seryl_tRNA_N PF02403.17 gi|345004380|ref|YP_004807233.1| - 9.5 6.2 49.1 0.13 12.2 3.5 5.2 2 2 2 4 4 4 0 Seryl-tRNA synthetase N-terminal domain IclR PF01614.13 gi|345004381|ref|YP_004807234.1| - 1.3e-35 121.9 0.4 8.9e-35 119.1 0.0 2.2 2 1 0 2 2 2 1 Bacterial transcriptional regulator HTH_IclR PF09339.5 gi|345004381|ref|YP_004807234.1| - 9e-14 50.7 0.9 9e-14 50.7 0.6 1.7 2 0 0 2 2 1 1 IclR helix-turn-helix domain MarR_2 PF12802.2 gi|345004381|ref|YP_004807234.1| - 2.4e-08 33.5 0.2 8.4e-08 31.7 0.1 1.8 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.2 gi|345004381|ref|YP_004807234.1| - 5.2e-07 29.3 0.2 1.2e-06 28.1 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain MarR PF01047.17 gi|345004381|ref|YP_004807234.1| - 1.4e-05 24.7 0.0 3.1e-05 23.5 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.15 gi|345004381|ref|YP_004807234.1| - 1.4e-05 24.6 0.0 2.5e-05 23.8 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.1 gi|345004381|ref|YP_004807234.1| - 9.6e-05 21.6 0.0 0.00016 20.9 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.14 gi|345004381|ref|YP_004807234.1| - 0.00023 20.7 0.0 0.00074 19.1 0.0 1.8 2 0 0 2 2 1 1 Sugar-specific transcriptional regulator TrmB HTH_DeoR PF08220.7 gi|345004381|ref|YP_004807234.1| - 0.00026 20.4 0.1 0.00062 19.2 0.0 1.7 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_27 PF13463.1 gi|345004381|ref|YP_004807234.1| - 0.00049 20.3 0.1 0.0054 17.0 0.0 2.3 2 0 0 2 2 2 1 Winged helix DNA-binding domain DUF977 PF06163.6 gi|345004381|ref|YP_004807234.1| - 0.00061 19.5 0.1 0.0011 18.7 0.0 1.3 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF977) Fe_dep_repress PF01325.14 gi|345004381|ref|YP_004807234.1| - 0.00092 19.1 0.1 0.0043 16.9 0.0 2.1 3 0 0 3 3 2 1 Iron dependent repressor, N-terminal DNA binding domain HTH_11 PF08279.7 gi|345004381|ref|YP_004807234.1| - 0.0014 18.2 0.0 0.0055 16.3 0.0 2.0 2 0 0 2 2 2 1 HTH domain HTH_34 PF13601.1 gi|345004381|ref|YP_004807234.1| - 0.0015 18.4 0.0 0.0033 17.4 0.0 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_10 PF04967.7 gi|345004381|ref|YP_004807234.1| - 0.0024 17.4 0.1 0.0066 15.9 0.1 1.8 1 0 0 1 1 1 1 HTH DNA binding domain LexA_DNA_bind PF01726.11 gi|345004381|ref|YP_004807234.1| - 0.0035 16.8 0.0 0.0091 15.5 0.0 1.7 1 0 0 1 1 1 1 LexA DNA binding domain DUF1803 PF08820.5 gi|345004381|ref|YP_004807234.1| - 0.033 13.8 0.0 0.061 13.0 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF1803) SpoIIID PF12116.3 gi|345004381|ref|YP_004807234.1| - 0.085 12.8 0.1 0.18 11.7 0.1 1.5 1 0 0 1 1 1 0 Stage III sporulation protein D DUF442 PF04273.8 gi|345004381|ref|YP_004807234.1| - 0.12 12.2 0.0 0.97 9.3 0.0 2.2 2 0 0 2 2 2 0 Putative phosphatase (DUF442) HTH_36 PF13730.1 gi|345004381|ref|YP_004807234.1| - 0.12 12.4 0.0 0.23 11.6 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain Sulfolobus_pRN PF05584.6 gi|345004381|ref|YP_004807234.1| - 0.15 12.0 0.0 11 6.1 0.0 2.2 2 0 0 2 2 2 0 Sulfolobus plasmid regulatory protein TetR_N PF00440.18 gi|345004381|ref|YP_004807234.1| - 0.15 11.6 2.2 1.6 8.4 0.2 2.9 2 2 0 2 2 2 0 Bacterial regulatory proteins, tetR family KfrA_N PF11740.3 gi|345004381|ref|YP_004807234.1| - 4.3 7.8 9.3 1.1 9.7 0.1 2.8 3 0 0 3 3 3 0 Plasmid replication region DNA-binding N-term Cyclase PF04199.8 gi|345004382|ref|YP_004807235.1| - 2e-32 112.2 1.2 2.7e-32 111.8 0.8 1.2 1 0 0 1 1 1 1 Putative cyclase XdhC_C PF13478.1 gi|345004383|ref|YP_004807236.1| - 5e-31 107.8 0.0 9.2e-31 106.9 0.0 1.4 1 0 0 1 1 1 1 XdhC Rossmann domain XdhC_CoxI PF02625.11 gi|345004383|ref|YP_004807236.1| - 3.1e-22 77.9 3.1 1.6e-17 62.8 1.0 2.5 2 0 0 2 2 2 2 XdhC and CoxI family Fer2_2 PF01799.15 gi|345004384|ref|YP_004807237.1| - 7.6e-32 109.0 0.1 1.4e-31 108.2 0.1 1.4 1 0 0 1 1 1 1 [2Fe-2S] binding domain Fer2 PF00111.22 gi|345004384|ref|YP_004807237.1| - 4.3e-08 32.7 1.9 8.1e-08 31.9 0.5 2.0 2 1 0 2 2 2 1 2Fe-2S iron-sulfur cluster binding domain Fer2_3 PF13085.1 gi|345004384|ref|YP_004807237.1| - 0.00039 20.2 0.1 0.00074 19.3 0.1 1.4 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Ald_Xan_dh_C2 PF02738.13 gi|345004385|ref|YP_004807238.1| - 8e-108 361.1 0.0 1.1e-106 357.2 0.0 2.0 1 1 0 1 1 1 1 Molybdopterin-binding domain of aldehyde dehydrogenase Ald_Xan_dh_C PF01315.17 gi|345004385|ref|YP_004807238.1| - 2.5e-23 82.2 0.0 6.3e-23 80.9 0.0 1.7 1 0 0 1 1 1 1 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain COXG PF06240.8 gi|345004386|ref|YP_004807239.1| - 2e-24 85.8 0.0 2.5e-24 85.5 0.0 1.1 1 0 0 1 1 1 1 Carbon monoxide dehydrogenase subunit G (CoxG) Polyketide_cyc2 PF10604.4 gi|345004386|ref|YP_004807239.1| - 5.1e-10 39.6 0.4 6.2e-10 39.3 0.3 1.1 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport Polyketide_cyc PF03364.15 gi|345004386|ref|YP_004807239.1| - 1.3e-06 28.4 0.0 2.1e-06 27.7 0.0 1.3 1 1 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport AHSA1 PF08327.6 gi|345004386|ref|YP_004807239.1| - 4.6e-05 23.5 0.1 6.5e-05 23.0 0.1 1.4 1 0 0 1 1 1 1 Activator of Hsp90 ATPase homolog 1-like protein FAD_binding_5 PF00941.16 gi|345004387|ref|YP_004807240.1| - 9.8e-47 158.5 0.0 1.7e-46 157.7 0.0 1.3 1 0 0 1 1 1 1 FAD binding domain in molybdopterin dehydrogenase CO_deh_flav_C PF03450.12 gi|345004387|ref|YP_004807240.1| - 1.9e-16 59.8 2.8 1.9e-16 59.8 1.9 1.9 2 0 0 2 2 2 1 CO dehydrogenase flavoprotein C-terminal domain Peptidase_S15 PF02129.13 gi|345004388|ref|YP_004807241.1| - 1.3e-48 165.7 0.3 1.7e-48 165.3 0.2 1.1 1 0 0 1 1 1 1 X-Pro dipeptidyl-peptidase (S15 family) PepX_C PF08530.5 gi|345004388|ref|YP_004807241.1| - 2e-45 155.3 4.7 2.5e-44 151.7 3.3 2.1 1 1 0 1 1 1 1 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain Abhydrolase_5 PF12695.2 gi|345004388|ref|YP_004807241.1| - 2.7e-06 27.1 0.1 5.6e-06 26.1 0.1 1.5 1 0 0 1 1 1 1 Alpha/beta hydrolase family Peptidase_S9 PF00326.16 gi|345004388|ref|YP_004807241.1| - 2.7e-05 23.4 1.0 2.7e-05 23.4 0.7 1.6 2 0 0 2 2 2 1 Prolyl oligopeptidase family Abhydrolase_6 PF12697.2 gi|345004388|ref|YP_004807241.1| - 7.9e-05 22.6 0.3 0.00015 21.7 0.2 1.5 1 0 0 1 1 1 1 Alpha/beta hydrolase family Xan_ur_permease PF00860.15 gi|345004389|ref|YP_004807242.1| - 7.7e-80 268.2 36.2 7.7e-80 268.2 25.1 1.4 2 0 0 2 2 2 1 Permease family Bap31 PF05529.7 gi|345004389|ref|YP_004807242.1| - 0.12 11.7 0.0 0.25 10.7 0.0 1.4 1 0 0 1 1 1 0 B-cell receptor-associated protein 31-like Amidohydro_4 PF13147.1 gi|345004391|ref|YP_004807244.1| - 7.6e-27 95.0 1.3 2.2e-26 93.5 0.9 1.9 1 1 0 1 1 1 1 Amidohydrolase Amidohydro_5 PF13594.1 gi|345004391|ref|YP_004807244.1| - 1.9e-14 53.2 1.7 4e-14 52.1 0.4 2.2 2 0 0 2 2 2 1 Amidohydrolase Amidohydro_1 PF01979.15 gi|345004391|ref|YP_004807244.1| - 5.2e-11 42.7 0.1 0.00011 22.0 0.0 2.3 2 0 0 2 2 2 2 Amidohydrolase family Amidohydro_3 PF07969.6 gi|345004391|ref|YP_004807244.1| - 3.7e-06 26.4 0.2 0.004 16.4 0.0 2.4 2 0 0 2 2 2 2 Amidohydrolase family HTH_AsnC-type PF13404.1 gi|345004392|ref|YP_004807245.1| - 5.7e-08 32.1 0.1 1.3e-07 31.0 0.1 1.7 1 1 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.1 gi|345004392|ref|YP_004807245.1| - 8.3e-08 31.5 0.0 1.2e-07 30.9 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_12 PF08461.5 gi|345004392|ref|YP_004807245.1| - 0.00049 19.7 0.0 0.00085 19.0 0.0 1.4 1 0 0 1 1 1 1 Ribonuclease R winged-helix domain HTH_Tnp_Tc3_2 PF01498.13 gi|345004392|ref|YP_004807245.1| - 0.0073 16.3 0.0 0.011 15.8 0.0 1.2 1 0 0 1 1 1 1 Transposase Myb_DNA-bind_4 PF13837.1 gi|345004392|ref|YP_004807245.1| - 0.099 12.7 0.0 0.57 10.3 0.0 2.0 2 0 0 2 2 2 0 Myb/SANT-like DNA-binding domain E3_binding PF02817.12 gi|345004393|ref|YP_004807246.1| - 0.071 12.7 0.1 0.17 11.5 0.1 1.6 1 0 0 1 1 1 0 e3 binding domain Peptidase_M19 PF01244.16 gi|345004394|ref|YP_004807247.1| - 1.4e-60 204.9 0.1 1.8e-60 204.5 0.1 1.1 1 0 0 1 1 1 1 Membrane dipeptidase (Peptidase family M19) NapD PF03927.8 gi|345004394|ref|YP_004807247.1| - 0.068 13.0 0.0 0.16 11.8 0.0 1.6 1 0 0 1 1 1 0 NapD protein Amidase PF01425.16 gi|345004395|ref|YP_004807248.1| - 6.1e-99 331.8 0.8 7.6e-99 331.5 0.6 1.0 1 0 0 1 1 1 1 Amidase Abhydrolase_6 PF12697.2 gi|345004396|ref|YP_004807249.1| - 5.9e-33 114.6 0.3 7.4e-33 114.3 0.2 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|345004396|ref|YP_004807249.1| - 6.7e-27 94.5 0.1 8.9e-27 94.1 0.1 1.2 1 0 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_5 PF12695.2 gi|345004396|ref|YP_004807249.1| - 1.7e-14 53.7 0.0 9.1e-14 51.4 0.0 1.9 1 1 0 1 1 1 1 Alpha/beta hydrolase family Peptidase_S9 PF00326.16 gi|345004396|ref|YP_004807249.1| - 6.9e-06 25.4 0.0 0.0094 15.1 0.0 2.3 2 0 0 2 2 2 2 Prolyl oligopeptidase family Hydrolase_4 PF12146.3 gi|345004396|ref|YP_004807249.1| - 0.00016 21.4 0.0 0.00039 20.2 0.0 1.7 1 0 0 1 1 1 1 Putative lysophospholipase Abhydrolase_4 PF08386.5 gi|345004396|ref|YP_004807249.1| - 0.00033 20.5 0.0 0.00061 19.6 0.0 1.4 1 0 0 1 1 1 1 TAP-like protein Thioesterase PF00975.15 gi|345004396|ref|YP_004807249.1| - 0.0078 16.4 0.0 0.011 15.9 0.0 1.3 1 0 0 1 1 1 1 Thioesterase domain Peptidase_S10 PF00450.17 gi|345004396|ref|YP_004807249.1| - 0.055 12.6 0.0 4.7 6.2 0.0 2.3 2 1 0 2 2 2 0 Serine carboxypeptidase Peptidase_S9 PF00326.16 gi|345004397|ref|YP_004807250.1| - 2.5e-45 154.3 0.5 4.3e-45 153.5 0.2 1.5 1 1 0 1 1 1 1 Prolyl oligopeptidase family DLH PF01738.13 gi|345004397|ref|YP_004807250.1| - 8.4e-15 54.6 1.2 4.9e-14 52.1 0.8 2.0 1 1 0 1 1 1 1 Dienelactone hydrolase family Abhydrolase_5 PF12695.2 gi|345004397|ref|YP_004807250.1| - 1.6e-13 50.6 0.0 4.4e-13 49.2 0.0 1.8 1 1 0 1 1 1 1 Alpha/beta hydrolase family PD40 PF07676.7 gi|345004397|ref|YP_004807250.1| - 7.2e-12 44.6 8.1 1.5e-06 27.6 0.3 5.4 5 0 0 5 5 5 2 WD40-like Beta Propeller Repeat DPPIV_N PF00930.16 gi|345004397|ref|YP_004807250.1| - 2.4e-09 36.2 0.0 0.0012 17.5 0.0 4.7 1 1 4 6 6 6 4 Dipeptidyl peptidase IV (DPP IV) N-terminal region AXE1 PF05448.7 gi|345004397|ref|YP_004807250.1| - 3.6e-07 29.0 0.5 3.7e-06 25.6 0.3 2.1 1 1 0 1 1 1 1 Acetyl xylan esterase (AXE1) Peptidase_S15 PF02129.13 gi|345004397|ref|YP_004807250.1| - 3.6e-06 26.6 4.0 3e-05 23.5 3.4 1.7 1 1 1 2 2 2 1 X-Pro dipeptidyl-peptidase (S15 family) Hydrolase_4 PF12146.3 gi|345004397|ref|YP_004807250.1| - 9.8e-05 22.1 0.8 0.00061 19.5 0.5 2.3 2 0 0 2 2 2 1 Putative lysophospholipase BAAT_C PF08840.6 gi|345004397|ref|YP_004807250.1| - 0.0057 16.3 0.0 0.28 10.8 0.0 2.1 2 0 0 2 2 2 1 BAAT / Acyl-CoA thioester hydrolase C terminal Gmad1 PF10647.4 gi|345004397|ref|YP_004807250.1| - 0.011 15.1 0.4 0.83 9.0 0.0 2.6 2 1 0 2 2 2 0 Lipoprotein LpqB beta-propeller domain Abhydrolase_1 PF00561.15 gi|345004397|ref|YP_004807250.1| - 0.018 14.5 0.5 0.048 13.2 0.5 1.6 1 1 1 2 2 2 0 alpha/beta hydrolase fold LIP PF03583.9 gi|345004397|ref|YP_004807250.1| - 0.088 12.0 0.6 7.1 5.7 0.6 2.1 2 0 0 2 2 2 0 Secretory lipase COesterase PF00135.23 gi|345004397|ref|YP_004807250.1| - 0.094 11.4 0.1 1.4 7.5 0.1 2.0 2 0 0 2 2 2 0 Carboxylesterase family SBP_bac_5 PF00496.17 gi|345004398|ref|YP_004807251.1| - 9.1e-39 133.3 7.8 1.9e-38 132.3 5.4 1.5 1 1 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle TAT_signal PF10518.4 gi|345004398|ref|YP_004807251.1| - 0.2 11.7 0.4 0.44 10.6 0.3 1.6 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence BPD_transp_1 PF00528.17 gi|345004399|ref|YP_004807252.1| - 1.1e-33 116.2 16.7 1.1e-33 116.2 11.6 2.0 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.17 gi|345004400|ref|YP_004807253.1| - 1.1e-23 83.7 15.4 1.2e-23 83.5 8.7 2.1 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.2 gi|345004400|ref|YP_004807253.1| - 2e-09 36.6 0.0 7.7e-09 34.7 0.0 2.0 1 0 0 1 1 1 1 N-terminal TM domain of oligopeptide transport permease C ABC_tran PF00005.22 gi|345004401|ref|YP_004807254.1| - 4.4e-60 201.9 0.0 2e-32 112.3 0.0 2.7 3 0 0 3 3 3 2 ABC transporter oligo_HPY PF08352.7 gi|345004401|ref|YP_004807254.1| - 3.4e-39 133.0 2.5 1.8e-19 69.8 0.1 2.5 2 0 0 2 2 2 2 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|345004401|ref|YP_004807254.1| - 4e-13 49.9 1.8 8.7e-05 22.6 0.0 4.1 2 2 1 3 3 3 2 AAA domain AAA_22 PF13401.1 gi|345004401|ref|YP_004807254.1| - 3.1e-09 37.0 2.3 0.0026 17.9 0.1 3.7 3 2 0 3 3 2 2 AAA domain AAA_16 PF13191.1 gi|345004401|ref|YP_004807254.1| - 9.8e-09 35.4 0.4 0.00053 20.0 0.0 2.9 3 0 0 3 3 3 2 AAA ATPase domain DUF258 PF03193.11 gi|345004401|ref|YP_004807254.1| - 3.5e-05 23.0 0.2 0.2 10.8 0.0 2.4 2 0 0 2 2 2 2 Protein of unknown function, DUF258 AAA_25 PF13481.1 gi|345004401|ref|YP_004807254.1| - 3.6e-05 23.2 6.2 0.98 8.7 2.3 4.2 3 1 0 3 3 3 2 AAA domain PRK PF00485.13 gi|345004401|ref|YP_004807254.1| - 0.00017 21.2 0.0 1.1 8.7 0.0 2.9 3 0 0 3 3 3 2 Phosphoribulokinase / Uridine kinase family AAA_29 PF13555.1 gi|345004401|ref|YP_004807254.1| - 0.00022 20.7 0.9 0.064 12.7 0.1 2.4 2 0 0 2 2 2 1 P-loop containing region of AAA domain AAA_5 PF07728.9 gi|345004401|ref|YP_004807254.1| - 0.00024 20.8 0.7 0.2 11.3 0.0 3.3 3 1 1 4 4 3 1 AAA domain (dynein-related subfamily) RNA_helicase PF00910.17 gi|345004401|ref|YP_004807254.1| - 0.0009 19.3 0.0 0.95 9.6 0.0 2.5 2 0 0 2 2 2 1 RNA helicase ATP-synt_ab PF00006.20 gi|345004401|ref|YP_004807254.1| - 0.001 18.6 0.1 0.37 10.2 0.0 2.3 2 0 0 2 2 2 1 ATP synthase alpha/beta family, nucleotide-binding domain SMC_N PF02463.14 gi|345004401|ref|YP_004807254.1| - 0.0016 17.7 3.8 0.56 9.3 0.1 3.8 3 1 0 3 3 3 1 RecF/RecN/SMC N terminal domain MMR_HSR1 PF01926.18 gi|345004401|ref|YP_004807254.1| - 0.0025 17.7 0.0 1.5 8.7 0.0 3.4 3 0 0 3 3 3 1 50S ribosome-binding GTPase AAA PF00004.24 gi|345004401|ref|YP_004807254.1| - 0.0038 17.4 0.0 0.42 10.8 0.0 2.9 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_18 PF13238.1 gi|345004401|ref|YP_004807254.1| - 0.0039 17.4 0.2 4.8 7.4 0.0 3.0 3 0 0 3 3 2 0 AAA domain NACHT PF05729.7 gi|345004401|ref|YP_004807254.1| - 0.0054 16.4 0.5 2 8.0 0.0 2.5 2 0 0 2 2 2 1 NACHT domain Mg_chelatase PF01078.16 gi|345004401|ref|YP_004807254.1| - 0.006 15.7 0.0 3.3 6.8 0.0 2.7 3 0 0 3 3 3 1 Magnesium chelatase, subunit ChlI AAA_23 PF13476.1 gi|345004401|ref|YP_004807254.1| - 0.0065 16.8 0.4 0.63 10.3 0.0 2.3 2 0 0 2 2 2 1 AAA domain MobB PF03205.9 gi|345004401|ref|YP_004807254.1| - 0.01 15.5 0.3 2.3 7.9 0.0 2.4 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B UPF0079 PF02367.12 gi|345004401|ref|YP_004807254.1| - 0.013 15.1 0.7 0.4 10.3 0.1 2.3 2 0 0 2 2 2 0 Uncharacterised P-loop hydrolase UPF0079 AAA_10 PF12846.2 gi|345004401|ref|YP_004807254.1| - 0.024 14.0 0.5 3 7.1 0.0 2.8 3 1 0 3 3 2 0 AAA-like domain AAA_33 PF13671.1 gi|345004401|ref|YP_004807254.1| - 0.03 14.1 0.2 8.2 6.3 0.1 2.8 2 1 0 2 2 2 0 AAA domain Miro PF08477.8 gi|345004401|ref|YP_004807254.1| - 0.037 14.5 0.0 14 6.2 0.0 2.5 2 0 0 2 2 2 0 Miro-like protein AAA_17 PF13207.1 gi|345004401|ref|YP_004807254.1| - 0.042 14.6 1.6 17 6.2 0.7 3.2 2 0 0 2 2 2 0 AAA domain NB-ARC PF00931.17 gi|345004401|ref|YP_004807254.1| - 0.062 12.1 0.5 1.4 7.6 0.0 2.2 2 0 0 2 2 2 0 NB-ARC domain Sigma54_activat PF00158.21 gi|345004401|ref|YP_004807254.1| - 0.086 12.3 0.1 17 4.8 0.0 2.4 2 0 0 2 2 2 0 Sigma-54 interaction domain Hpr_kinase_C PF07475.7 gi|345004401|ref|YP_004807254.1| - 0.11 11.7 0.7 4.8 6.4 0.0 2.4 2 0 0 2 2 2 0 HPr Serine kinase C-terminal domain DUF87 PF01935.12 gi|345004401|ref|YP_004807254.1| - 0.16 11.7 0.6 8.9 6.0 0.0 2.5 2 0 0 2 2 2 0 Domain of unknown function DUF87 PduV-EutP PF10662.4 gi|345004401|ref|YP_004807254.1| - 0.25 10.8 0.4 28 4.1 0.0 2.8 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation Zeta_toxin PF06414.7 gi|345004401|ref|YP_004807254.1| - 0.34 9.9 1.0 5 6.1 0.0 2.3 2 0 0 2 2 2 0 Zeta toxin AAA_24 PF13479.1 gi|345004401|ref|YP_004807254.1| - 0.39 10.2 1.4 26 4.3 0.1 2.5 2 0 0 2 2 2 0 AAA domain DUF3265 PF11665.3 gi|345004401|ref|YP_004807254.1| - 0.44 10.4 4.5 2.8 7.8 0.2 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3265) Claudin_2 PF13903.1 gi|345004402|ref|YP_004807255.1| - 0.24 11.0 7.3 0.27 10.9 5.0 1.1 1 0 0 1 1 1 0 PMP-22/EMP/MP20/Claudin tight junction DUF751 PF05421.6 gi|345004402|ref|YP_004807255.1| - 1.3 9.3 4.5 10 6.5 3.4 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF751) TcdA_TcdB_pore PF12920.2 gi|345004402|ref|YP_004807255.1| - 7.6 4.3 7.1 8.5 4.1 4.9 1.0 1 0 0 1 1 1 0 TcdA/TcdB pore forming domain DUF1469 PF07332.6 gi|345004402|ref|YP_004807255.1| - 8.7 6.1 11.6 11 5.8 8.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1469) Asp_Glu_race PF01177.17 gi|345004403|ref|YP_004807256.1| - 5.8e-21 75.3 0.2 7.2e-21 75.0 0.1 1.1 1 0 0 1 1 1 1 Asp/Glu/Hydantoin racemase Peptidase_M28 PF04389.12 gi|345004404|ref|YP_004807257.1| - 5.9e-15 55.4 0.1 1.1e-14 54.5 0.0 1.4 1 0 0 1 1 1 1 Peptidase family M28 PA PF02225.17 gi|345004404|ref|YP_004807257.1| - 0.00034 20.2 0.0 0.0007 19.2 0.0 1.5 1 0 0 1 1 1 1 PA domain ADH_zinc_N PF00107.21 gi|345004405|ref|YP_004807258.1| - 3.8e-31 107.3 0.1 7.3e-31 106.4 0.0 1.5 2 0 0 2 2 2 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.1 gi|345004405|ref|YP_004807258.1| - 1.9e-21 77.3 0.1 4.1e-21 76.2 0.1 1.6 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_N PF08240.7 gi|345004405|ref|YP_004807258.1| - 4.5e-21 74.6 1.6 8.2e-21 73.8 1.1 1.4 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain Eno-Rase_NADH_b PF12242.3 gi|345004405|ref|YP_004807258.1| - 0.0023 17.6 0.1 0.0058 16.3 0.1 1.7 1 0 0 1 1 1 1 NAD(P)H binding domain of trans-2-enoyl-CoA reductase AlaDh_PNT_C PF01262.16 gi|345004405|ref|YP_004807258.1| - 0.0084 15.6 0.0 0.015 14.9 0.0 1.3 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain Phage_holin PF04688.8 gi|345004407|ref|YP_004807260.1| - 0.12 11.8 1.2 0.16 11.5 0.9 1.2 1 0 0 1 1 1 0 Phage lysis protein, holin SSF PF00474.12 gi|345004408|ref|YP_004807261.1| - 1.4e-58 198.4 34.8 1.8e-58 198.1 24.1 1.1 1 0 0 1 1 1 1 Sodium:solute symporter family TrbC PF04956.8 gi|345004408|ref|YP_004807261.1| - 0.0066 16.4 0.0 0.0066 16.4 0.0 6.2 5 1 2 7 7 7 1 TrbC/VIRB2 family Amidohydro_1 PF01979.15 gi|345004410|ref|YP_004807263.1| - 4.8e-27 95.4 2.8 5.7e-27 95.2 1.9 1.1 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_4 PF13147.1 gi|345004410|ref|YP_004807263.1| - 1.9e-14 54.3 23.6 1.1e-13 51.8 16.4 2.0 1 1 0 1 1 1 1 Amidohydrolase Amidohydro_3 PF07969.6 gi|345004410|ref|YP_004807263.1| - 1.5e-09 37.5 18.1 1.1e-08 34.7 7.8 3.2 1 1 0 2 2 2 2 Amidohydrolase family Amidohydro_5 PF13594.1 gi|345004410|ref|YP_004807263.1| - 3.3e-08 33.2 1.0 1.2e-07 31.4 0.0 2.4 2 0 0 2 2 2 1 Amidohydrolase CorA PF01544.13 gi|345004411|ref|YP_004807264.1| - 1.3e-78 263.9 0.1 1.5e-78 263.7 0.0 1.0 1 0 0 1 1 1 1 CorA-like Mg2+ transporter protein DUF3285 PF11688.3 gi|345004412|ref|YP_004807265.1| - 0.49 10.0 2.9 11 5.6 0.2 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3285) DUF3188 PF11384.3 gi|345004412|ref|YP_004807265.1| - 2.3 7.8 9.7 0.56 9.8 1.1 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF3188) DUF3040 PF11239.3 gi|345004412|ref|YP_004807265.1| - 2.6 8.1 5.9 3.3 7.8 4.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3040) CcmD PF04995.9 gi|345004412|ref|YP_004807265.1| - 6.4 6.5 5.7 3.4 7.4 0.2 2.0 2 0 0 2 2 2 0 Heme exporter protein D (CcmD) Sugar_tr PF00083.19 gi|345004413|ref|YP_004807266.1| - 0.015 13.9 1.5 0.016 13.8 1.0 1.0 1 0 0 1 1 1 0 Sugar (and other) transporter Bac_luciferase PF00296.15 gi|345004414|ref|YP_004807267.1| - 2.6e-49 168.0 4.7 3.2e-49 167.6 3.3 1.1 1 0 0 1 1 1 1 Luciferase-like monooxygenase ASCH PF04266.9 gi|345004415|ref|YP_004807268.1| - 0.028 14.7 0.2 0.042 14.2 0.2 1.3 1 0 0 1 1 1 0 ASCH domain Amidohydro_3 PF07969.6 gi|345004416|ref|YP_004807269.1| - 5.2e-34 118.1 1.7 6.7e-34 117.7 1.2 1.0 1 0 0 1 1 1 1 Amidohydrolase family DUF2975 PF11188.3 gi|345004418|ref|YP_004807271.1| - 0.94 9.1 8.1 1.3 8.7 4.7 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF2975) ABC_tran PF00005.22 gi|345004419|ref|YP_004807272.1| - 6.5e-34 117.1 0.0 1.2e-33 116.3 0.0 1.4 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|345004419|ref|YP_004807272.1| - 2.8e-17 62.8 1.1 6.2e-17 61.7 0.8 1.6 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|345004419|ref|YP_004807272.1| - 3.6e-06 27.1 0.0 0.00095 19.2 0.0 2.2 1 1 1 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|345004419|ref|YP_004807272.1| - 0.00018 21.6 0.8 0.0042 17.2 0.2 2.8 2 1 0 2 2 2 1 AAA domain SMC_N PF02463.14 gi|345004419|ref|YP_004807272.1| - 0.0036 16.5 0.0 0.008 15.4 0.0 1.5 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain DUF258 PF03193.11 gi|345004419|ref|YP_004807272.1| - 0.0059 15.8 0.0 0.011 14.9 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 ATP-synt_ab PF00006.20 gi|345004419|ref|YP_004807272.1| - 0.0088 15.5 0.0 0.0092 15.4 0.0 1.2 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain AAA_16 PF13191.1 gi|345004419|ref|YP_004807272.1| - 0.01 15.8 1.0 0.025 14.5 0.1 2.1 2 1 0 2 2 2 0 AAA ATPase domain AAA PF00004.24 gi|345004419|ref|YP_004807272.1| - 0.019 15.2 0.0 0.051 13.7 0.0 1.9 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) FtsK_SpoIIIE PF01580.13 gi|345004419|ref|YP_004807272.1| - 0.019 14.4 0.0 0.035 13.5 0.0 1.4 1 0 0 1 1 1 0 FtsK/SpoIIIE family MMR_HSR1 PF01926.18 gi|345004419|ref|YP_004807272.1| - 0.02 14.8 0.0 0.038 13.9 0.0 1.5 1 0 0 1 1 1 0 50S ribosome-binding GTPase AAA_29 PF13555.1 gi|345004419|ref|YP_004807272.1| - 0.07 12.6 0.3 0.14 11.7 0.2 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain PRK PF00485.13 gi|345004419|ref|YP_004807272.1| - 0.095 12.2 0.0 0.16 11.5 0.0 1.3 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family SbcCD_C PF13558.1 gi|345004419|ref|YP_004807272.1| - 0.13 12.2 0.0 0.67 9.9 0.0 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_18 PF13238.1 gi|345004419|ref|YP_004807272.1| - 0.13 12.5 0.4 0.42 10.9 0.3 1.9 1 1 0 1 1 1 0 AAA domain AAA_13 PF13166.1 gi|345004419|ref|YP_004807272.1| - 0.13 10.6 0.7 11 4.2 0.0 2.5 3 0 0 3 3 3 0 AAA domain NACHT PF05729.7 gi|345004419|ref|YP_004807272.1| - 0.15 11.6 0.2 0.3 10.7 0.1 1.5 1 0 0 1 1 1 0 NACHT domain PduV-EutP PF10662.4 gi|345004419|ref|YP_004807272.1| - 0.2 11.1 0.1 0.4 10.1 0.1 1.4 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation ABC_tran PF00005.22 gi|345004420|ref|YP_004807273.1| - 5.9e-28 97.8 0.0 9.2e-28 97.2 0.0 1.3 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|345004420|ref|YP_004807273.1| - 6.3e-17 61.6 0.2 1.2e-16 60.7 0.1 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|345004420|ref|YP_004807273.1| - 6.2e-09 36.2 0.1 1.2e-06 28.7 0.1 2.1 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|345004420|ref|YP_004807273.1| - 3.8e-06 26.3 0.0 5.4e-06 25.8 0.0 1.1 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_10 PF12846.2 gi|345004420|ref|YP_004807273.1| - 0.0041 16.6 0.5 0.027 13.9 0.1 2.0 1 1 1 2 2 2 1 AAA-like domain AAA PF00004.24 gi|345004420|ref|YP_004807273.1| - 0.0093 16.1 0.1 0.068 13.3 0.0 2.0 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.1 gi|345004420|ref|YP_004807273.1| - 0.016 15.2 0.1 0.025 14.5 0.1 1.4 1 1 0 1 1 1 0 AAA ATPase domain AAA_22 PF13401.1 gi|345004420|ref|YP_004807273.1| - 0.025 14.7 1.9 0.86 9.7 1.3 2.2 1 1 0 1 1 1 0 AAA domain AAA_29 PF13555.1 gi|345004420|ref|YP_004807273.1| - 0.027 14.0 0.1 0.048 13.1 0.1 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain DUF87 PF01935.12 gi|345004420|ref|YP_004807273.1| - 0.04 13.7 0.2 0.093 12.5 0.1 1.6 1 0 0 1 1 1 0 Domain of unknown function DUF87 Sigma54_activat PF00158.21 gi|345004420|ref|YP_004807273.1| - 0.053 12.9 0.3 0.54 9.7 0.0 2.0 2 0 0 2 2 2 0 Sigma-54 interaction domain AIG1 PF04548.11 gi|345004420|ref|YP_004807273.1| - 0.081 12.0 0.1 0.13 11.3 0.0 1.3 1 0 0 1 1 1 0 AIG1 family AAA_15 PF13175.1 gi|345004420|ref|YP_004807273.1| - 0.085 11.8 0.4 0.2 10.6 0.1 1.7 2 0 0 2 2 2 0 AAA ATPase domain FtsK_SpoIIIE PF01580.13 gi|345004420|ref|YP_004807273.1| - 0.092 12.2 0.0 0.16 11.4 0.0 1.4 1 0 0 1 1 1 0 FtsK/SpoIIIE family ATP-synt_ab PF00006.20 gi|345004420|ref|YP_004807273.1| - 0.15 11.5 0.1 0.21 11.0 0.1 1.3 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain ChuX_HutX PF06228.8 gi|345004420|ref|YP_004807273.1| - 0.18 11.1 0.2 0.31 10.3 0.1 1.3 1 0 0 1 1 1 0 Haem utilisation ChuX/HutX BPD_transp_1 PF00528.17 gi|345004421|ref|YP_004807274.1| - 5.8e-18 65.0 8.6 5.8e-18 65.0 6.0 2.5 3 0 0 3 3 3 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.2 gi|345004421|ref|YP_004807274.1| - 0.0013 18.0 0.0 0.0013 18.0 0.0 3.6 5 0 0 5 5 5 1 N-terminal TM domain of oligopeptide transport permease C BPD_transp_1 PF00528.17 gi|345004422|ref|YP_004807275.1| - 2.4e-34 118.4 11.7 2.4e-34 118.4 8.1 1.8 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_5 PF00496.17 gi|345004423|ref|YP_004807276.1| - 1e-55 189.1 0.8 1.4e-55 188.6 0.6 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle TAT_signal PF10518.4 gi|345004423|ref|YP_004807276.1| - 0.00063 19.5 4.0 0.0018 18.1 2.8 1.8 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence UCR_Fe-S_N PF10399.4 gi|345004423|ref|YP_004807276.1| - 0.032 13.4 0.3 0.067 12.3 0.2 1.6 1 0 0 1 1 1 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal Peptidase_S9 PF00326.16 gi|345004424|ref|YP_004807277.1| - 6.5e-43 146.4 0.5 1e-42 145.8 0.3 1.2 1 0 0 1 1 1 1 Prolyl oligopeptidase family PD40 PF07676.7 gi|345004424|ref|YP_004807277.1| - 2.5e-11 42.9 5.9 1.1e-05 24.9 0.3 5.1 5 0 0 5 5 5 2 WD40-like Beta Propeller Repeat Abhydrolase_5 PF12695.2 gi|345004424|ref|YP_004807277.1| - 3.9e-11 42.8 0.0 7.7e-11 41.9 0.0 1.5 1 0 0 1 1 1 1 Alpha/beta hydrolase family Peptidase_S15 PF02129.13 gi|345004424|ref|YP_004807277.1| - 1.2e-08 34.7 1.3 3.3e-05 23.4 0.7 2.2 1 1 1 2 2 2 2 X-Pro dipeptidyl-peptidase (S15 family) Gmad1 PF10647.4 gi|345004424|ref|YP_004807277.1| - 3.1e-07 30.0 1.6 7.6e-05 22.2 0.5 2.4 2 0 0 2 2 2 2 Lipoprotein LpqB beta-propeller domain DLH PF01738.13 gi|345004424|ref|YP_004807277.1| - 9.2e-07 28.3 0.0 1.7e-06 27.4 0.0 1.3 1 0 0 1 1 1 1 Dienelactone hydrolase family Abhydrolase_6 PF12697.2 gi|345004424|ref|YP_004807277.1| - 5.5e-06 26.4 2.7 0.0002 21.3 1.9 2.6 1 1 0 1 1 1 1 Alpha/beta hydrolase family AXE1 PF05448.7 gi|345004424|ref|YP_004807277.1| - 0.00012 20.6 0.1 0.08 11.4 0.1 2.3 2 0 0 2 2 2 2 Acetyl xylan esterase (AXE1) Esterase_phd PF10503.4 gi|345004424|ref|YP_004807277.1| - 0.01 15.0 0.1 0.039 13.1 0.1 1.9 1 1 0 1 1 1 0 Esterase PHB depolymerase FSH1 PF03959.8 gi|345004424|ref|YP_004807277.1| - 0.028 13.8 0.0 0.055 12.9 0.0 1.4 1 0 0 1 1 1 0 Serine hydrolase (FSH1) DPPIV_N PF00930.16 gi|345004424|ref|YP_004807277.1| - 0.029 12.9 0.0 6.1 5.3 0.0 3.7 2 1 0 3 3 3 0 Dipeptidyl peptidase IV (DPP IV) N-terminal region Abhydrolase_1 PF00561.15 gi|345004424|ref|YP_004807277.1| - 0.052 13.1 0.8 11 5.5 0.0 2.6 3 0 0 3 3 3 0 alpha/beta hydrolase fold AzlC PF03591.9 gi|345004425|ref|YP_004807278.1| - 2.3e-43 147.5 9.2 2.3e-43 147.5 6.4 1.6 2 0 0 2 2 2 1 AzlC protein Abi PF02517.11 gi|345004425|ref|YP_004807278.1| - 0.9 9.7 6.6 1.3 9.2 3.2 2.2 1 1 1 2 2 2 0 CAAX protease self-immunity AzlD PF05437.7 gi|345004426|ref|YP_004807279.1| - 1.4e-21 76.3 14.5 1.6e-21 76.1 10.0 1.0 1 0 0 1 1 1 1 Branched-chain amino acid transport protein (AzlD) TM_helix PF05552.7 gi|345004426|ref|YP_004807279.1| - 2.5 7.8 7.4 2.6 7.7 0.0 3.1 3 0 0 3 3 3 0 Conserved TM helix HTH_24 PF13412.1 gi|345004427|ref|YP_004807280.1| - 6.2e-07 28.6 0.1 8.2e-07 28.3 0.1 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|345004427|ref|YP_004807280.1| - 1.1e-06 28.1 0.2 1.4e-06 27.8 0.2 1.2 1 0 0 1 1 1 1 MarR family TrmB PF01978.14 gi|345004427|ref|YP_004807280.1| - 5.1e-05 22.8 0.1 6.8e-05 22.4 0.1 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB TFIIE_alpha PF02002.12 gi|345004427|ref|YP_004807280.1| - 0.00069 19.0 0.0 0.0008 18.8 0.0 1.1 1 0 0 1 1 1 1 TFIIE alpha subunit GntR PF00392.16 gi|345004427|ref|YP_004807280.1| - 0.00078 18.8 0.9 0.0011 18.3 0.6 1.2 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_AsnC-type PF13404.1 gi|345004427|ref|YP_004807280.1| - 0.0039 16.6 0.3 0.0061 16.0 0.2 1.3 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_27 PF13463.1 gi|345004427|ref|YP_004807280.1| - 0.018 15.3 0.1 0.023 15.0 0.1 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_Mga PF08280.6 gi|345004427|ref|YP_004807280.1| - 0.032 14.0 0.0 0.056 13.2 0.0 1.5 1 1 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain Rrf2 PF02082.15 gi|345004427|ref|YP_004807280.1| - 0.033 14.2 0.1 0.047 13.8 0.1 1.2 1 0 0 1 1 1 0 Transcriptional regulator HTH_11 PF08279.7 gi|345004427|ref|YP_004807280.1| - 0.037 13.6 0.2 0.057 13.0 0.1 1.2 1 0 0 1 1 1 0 HTH domain HTH_36 PF13730.1 gi|345004427|ref|YP_004807280.1| - 0.037 14.1 0.0 0.058 13.5 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain Fe_dep_repress PF01325.14 gi|345004427|ref|YP_004807280.1| - 0.075 12.9 0.1 0.12 12.2 0.1 1.3 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_20 PF12840.2 gi|345004427|ref|YP_004807280.1| - 0.12 12.2 0.2 0.18 11.6 0.2 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain DUF2582 PF10771.4 gi|345004427|ref|YP_004807280.1| - 0.12 12.2 0.0 0.18 11.7 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2582) HTH_DeoR PF08220.7 gi|345004427|ref|YP_004807280.1| - 0.14 11.6 0.2 0.2 11.2 0.1 1.2 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain Cupin_2 PF07883.6 gi|345004429|ref|YP_004807282.1| - 6.9e-16 57.5 0.3 9.2e-16 57.1 0.2 1.2 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.14 gi|345004429|ref|YP_004807282.1| - 3.1e-05 23.6 0.0 5e-05 22.9 0.0 1.3 1 0 0 1 1 1 1 AraC-like ligand binding domain DUF1637 PF07847.7 gi|345004429|ref|YP_004807282.1| - 0.00019 20.8 0.0 0.00044 19.6 0.0 1.5 1 1 0 1 1 1 1 Protein of unknown function (DUF1637) CDO_I PF05995.7 gi|345004429|ref|YP_004807282.1| - 0.00026 20.1 0.0 0.0019 17.4 0.0 1.9 1 1 0 1 1 1 1 Cysteine dioxygenase type I MannoseP_isomer PF01050.13 gi|345004429|ref|YP_004807282.1| - 0.013 15.0 0.0 0.015 14.9 0.0 1.1 1 0 0 1 1 1 0 Mannose-6-phosphate isomerase Cupin_3 PF05899.7 gi|345004429|ref|YP_004807282.1| - 0.028 13.8 0.0 0.044 13.1 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF861) Fer2 PF00111.22 gi|345004431|ref|YP_004807284.1| - 1e-12 47.6 0.0 2.4e-12 46.4 0.0 1.6 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain DnaJ PF00226.26 gi|345004431|ref|YP_004807284.1| - 4.7e-10 39.0 0.0 8.8e-10 38.1 0.0 1.4 1 0 0 1 1 1 1 DnaJ domain Fer2_4 PF13510.1 gi|345004431|ref|YP_004807284.1| - 0.035 13.9 0.5 0.22 11.3 0.3 2.1 1 1 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain RPT PF13446.1 gi|345004431|ref|YP_004807284.1| - 0.038 13.3 0.0 0.11 11.9 0.0 1.7 2 0 0 2 2 2 0 A repeated domain in UCH-protein Amidohydro_3 PF07969.6 gi|345004432|ref|YP_004807285.1| - 3.1e-73 247.3 3.5 3.6e-73 247.1 2.4 1.0 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_5 PF13594.1 gi|345004432|ref|YP_004807285.1| - 4.4e-12 45.6 0.3 1.4e-11 44.0 0.1 2.0 2 0 0 2 2 2 1 Amidohydrolase Amidohydro_1 PF01979.15 gi|345004432|ref|YP_004807285.1| - 3.4e-09 36.7 0.1 2.2e-06 27.5 0.0 3.2 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_4 PF13147.1 gi|345004432|ref|YP_004807285.1| - 0.00013 22.1 12.2 0.0052 16.8 2.1 3.7 2 1 1 3 3 3 2 Amidohydrolase Radical_SAM PF04055.16 gi|345004432|ref|YP_004807285.1| - 0.099 12.8 0.2 0.51 10.4 0.0 2.2 2 1 1 3 3 3 0 Radical SAM superfamily Ferritin PF00210.19 gi|345004433|ref|YP_004807286.1| - 5.4e-23 81.3 2.9 6.3e-23 81.0 2.0 1.1 1 0 0 1 1 1 1 Ferritin-like domain GCN5L1 PF06320.8 gi|345004433|ref|YP_004807286.1| - 0.029 14.1 1.2 0.058 13.2 0.1 1.9 2 1 0 2 2 2 0 GCN5-like protein 1 (GCN5L1) Fe_dep_repr_C PF02742.10 gi|345004433|ref|YP_004807286.1| - 7 6.4 6.6 0.71 9.6 0.7 2.3 4 0 0 4 4 4 0 Iron dependent repressor, metal binding and dimerisation domain NIF3 PF01784.13 gi|345004435|ref|YP_004807288.1| - 2.2e-15 56.9 0.3 1.4e-14 54.2 0.2 1.9 1 1 0 1 1 1 1 NIF3 (NGG1p interacting factor 3) Oxidored_FMN PF00724.15 gi|345004436|ref|YP_004807289.1| - 3.4e-67 226.8 0.0 4.1e-67 226.5 0.0 1.0 1 0 0 1 1 1 1 NADH:flavin oxidoreductase / NADH oxidase family Dus PF01207.12 gi|345004436|ref|YP_004807289.1| - 0.0038 16.1 0.0 0.0054 15.6 0.0 1.2 1 0 0 1 1 1 1 Dihydrouridine synthase (Dus) Pyr_redox_2 PF07992.9 gi|345004437|ref|YP_004807290.1| - 5.2e-32 111.3 0.8 7.8e-32 110.7 0.6 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.17 gi|345004437|ref|YP_004807290.1| - 4.7e-24 84.5 0.1 7.8e-24 83.8 0.0 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox PF00070.22 gi|345004437|ref|YP_004807290.1| - 4.8e-20 71.7 1.1 9.7e-16 57.9 0.0 2.8 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase K_oxygenase PF13434.1 gi|345004437|ref|YP_004807290.1| - 5.6e-06 25.5 0.0 1.2e-05 24.3 0.0 1.5 1 0 0 1 1 1 1 L-lysine 6-monooxygenase (NADPH-requiring) Pyr_redox_3 PF13738.1 gi|345004437|ref|YP_004807290.1| - 6.2e-06 26.4 0.0 5.8e-05 23.2 0.0 2.2 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase XdhC_C PF13478.1 gi|345004437|ref|YP_004807290.1| - 0.00021 21.6 0.1 0.00058 20.1 0.0 1.8 2 0 0 2 2 2 1 XdhC Rossmann domain NAD_binding_7 PF13241.1 gi|345004437|ref|YP_004807290.1| - 0.0005 20.2 0.1 0.018 15.2 0.0 2.4 2 0 0 2 2 2 1 Putative NAD(P)-binding GIDA PF01134.17 gi|345004437|ref|YP_004807290.1| - 0.00052 18.9 0.1 0.00091 18.1 0.1 1.4 1 0 0 1 1 1 1 Glucose inhibited division protein A 3HCDH_N PF02737.13 gi|345004437|ref|YP_004807290.1| - 0.0015 18.2 0.4 0.043 13.4 0.0 2.4 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain FAD_binding_2 PF00890.19 gi|345004437|ref|YP_004807290.1| - 0.0042 16.0 3.3 0.0084 15.0 0.6 2.4 2 0 0 2 2 2 1 FAD binding domain DAO PF01266.19 gi|345004437|ref|YP_004807290.1| - 0.19 10.5 6.2 0.67 8.7 0.0 3.3 4 0 0 4 4 4 0 FAD dependent oxidoreductase Myosin_N PF02736.14 gi|345004437|ref|YP_004807290.1| - 2.2 8.0 4.8 5.6 6.7 0.1 3.4 4 0 0 4 4 3 0 Myosin N-terminal SH3-like domain DrsE PF02635.10 gi|345004438|ref|YP_004807291.1| - 0.00039 20.4 0.0 0.00047 20.2 0.0 1.1 1 0 0 1 1 1 1 DsrE/DsrF-like family Peripla_BP_4 PF13407.1 gi|345004438|ref|YP_004807291.1| - 0.092 12.0 0.0 0.11 11.8 0.0 1.0 1 0 0 1 1 1 0 Periplasmic binding protein domain Hemerythrin PF01814.18 gi|345004439|ref|YP_004807292.1| - 0.046 13.8 0.2 0.46 10.6 0.1 2.1 2 0 0 2 2 2 0 Hemerythrin HHE cation binding domain DUF4131 PF13567.1 gi|345004440|ref|YP_004807293.1| - 9.7 5.5 14.7 0.33 10.3 4.9 2.3 1 1 2 3 3 3 0 Domain of unknown function (DUF4131) Thiolase_C PF02803.13 gi|345004441|ref|YP_004807294.1| - 1e-09 37.8 0.1 4.7e-09 35.7 0.0 1.9 2 0 0 2 2 2 1 Thiolase, C-terminal domain Thiolase_N PF00108.18 gi|345004441|ref|YP_004807294.1| - 2.9e-06 26.4 0.0 6e-06 25.4 0.0 1.5 1 0 0 1 1 1 1 Thiolase, N-terminal domain Ketoacyl-synt_C PF02801.17 gi|345004441|ref|YP_004807294.1| - 0.00024 20.9 0.1 0.97 9.2 0.0 3.2 3 0 0 3 3 3 2 Beta-ketoacyl synthase, C-terminal domain DUF35 PF01796.12 gi|345004442|ref|YP_004807295.1| - 6.2e-07 29.5 0.6 8.6e-07 29.1 0.4 1.2 1 0 0 1 1 1 1 DUF35 OB-fold domain Laminin_I PF06008.9 gi|345004443|ref|YP_004807296.1| - 0.015 14.6 0.5 0.03 13.6 0.1 1.7 2 0 0 2 2 2 0 Laminin Domain I DUF948 PF06103.6 gi|345004443|ref|YP_004807296.1| - 0.084 12.7 0.0 1.5 8.6 0.0 2.2 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF948) PLDc_2 PF13091.1 gi|345004445|ref|YP_004807298.1| - 2.5e-33 114.4 0.0 3e-17 62.5 0.0 2.3 2 0 0 2 2 2 2 PLD-like domain PLDc PF00614.17 gi|345004445|ref|YP_004807298.1| - 1.7e-07 30.7 1.3 8.7e-06 25.3 0.2 2.5 2 0 0 2 2 2 1 Phospholipase D Active site motif LTD PF00932.14 gi|345004445|ref|YP_004807298.1| - 0.024 14.7 0.2 12 6.0 0.0 2.8 2 0 0 2 2 2 0 Lamin Tail Domain Regulator_TrmB PF11495.3 gi|345004445|ref|YP_004807298.1| - 0.099 11.6 0.1 0.58 9.0 0.1 2.0 2 0 0 2 2 2 0 Archaeal transcriptional regulator TrmB DHH PF01368.15 gi|345004446|ref|YP_004807299.1| - 1.7e-11 43.9 0.0 3e-11 43.1 0.0 1.3 1 0 0 1 1 1 1 DHH family tRNA_anti-codon PF01336.20 gi|345004446|ref|YP_004807299.1| - 2.1e-08 33.9 0.1 4e-08 32.9 0.0 1.5 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain S1 PF00575.18 gi|345004446|ref|YP_004807299.1| - 0.0025 17.8 0.8 0.0055 16.7 0.6 1.6 1 0 0 1 1 1 1 S1 RNA binding domain Prok-JAB PF14464.1 gi|345004447|ref|YP_004807300.1| - 2.6e-13 49.4 0.0 7.6e-13 47.9 0.0 1.7 1 1 1 2 2 2 1 Prokaryotic homologs of the JAB domain JAB PF01398.16 gi|345004447|ref|YP_004807300.1| - 0.00016 21.3 0.0 0.00053 19.7 0.0 1.7 1 1 0 1 1 1 1 JAB1/Mov34/MPN/PAD-1 ubiquitin protease RadC PF04002.10 gi|345004447|ref|YP_004807300.1| - 0.0053 16.4 0.0 0.0078 15.8 0.0 1.3 1 0 0 1 1 1 1 RadC-like JAB domain CTP_transf_2 PF01467.21 gi|345004448|ref|YP_004807301.1| - 8.7e-10 38.8 0.9 1.3e-09 38.2 0.6 1.5 1 1 0 1 1 1 1 Cytidylyltransferase FAD_syn PF06574.7 gi|345004448|ref|YP_004807301.1| - 0.01 15.4 1.4 0.06 12.9 0.0 2.4 2 1 1 3 3 3 0 FAD synthetase UbiA PF01040.13 gi|345004449|ref|YP_004807302.1| - 1.3e-27 96.6 29.6 1.3e-27 96.6 20.5 2.5 2 1 0 2 2 2 1 UbiA prenyltransferase family COX15-CtaA PF02628.10 gi|345004449|ref|YP_004807302.1| - 5.3e-19 68.2 7.3 5.3e-19 68.2 5.1 3.2 3 1 0 3 3 3 1 Cytochrome oxidase assembly protein ECH PF00378.15 gi|345004450|ref|YP_004807303.1| - 0.11 11.5 0.2 0.16 11.0 0.1 1.1 1 0 0 1 1 1 0 Enoyl-CoA hydratase/isomerase family MASE2 PF05230.6 gi|345004450|ref|YP_004807303.1| - 2.7 8.0 7.0 3.7 7.5 1.3 2.6 2 1 0 2 2 2 0 MASE2 domain Rdx PF10262.4 gi|345004451|ref|YP_004807304.1| - 1.3e-16 60.3 0.0 1.5e-16 60.1 0.0 1.0 1 0 0 1 1 1 1 Rdx family DUF2070 PF09843.4 gi|345004451|ref|YP_004807304.1| - 0.05 13.0 0.0 0.058 12.8 0.0 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) DUF2054 PF10218.4 gi|345004451|ref|YP_004807304.1| - 0.076 12.8 0.0 0.092 12.5 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2054) HxlR PF01638.12 gi|345004452|ref|YP_004807305.1| - 1.5e-21 75.8 0.0 1.8e-21 75.5 0.0 1.1 1 0 0 1 1 1 1 HxlR-like helix-turn-helix HTH_34 PF13601.1 gi|345004452|ref|YP_004807305.1| - 4.1e-06 26.7 0.0 6.2e-06 26.1 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_27 PF13463.1 gi|345004452|ref|YP_004807305.1| - 6.6e-05 23.1 0.1 9.2e-05 22.6 0.1 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain PadR PF03551.9 gi|345004452|ref|YP_004807305.1| - 0.00016 21.3 0.1 0.00026 20.7 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_45 PF14947.1 gi|345004452|ref|YP_004807305.1| - 0.0012 18.6 0.0 0.0016 18.2 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix TrmB PF01978.14 gi|345004452|ref|YP_004807305.1| - 0.0084 15.7 0.0 0.014 15.1 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.17 gi|345004452|ref|YP_004807305.1| - 0.013 15.1 0.0 0.019 14.6 0.0 1.3 1 0 0 1 1 1 0 MarR family TFIIE_alpha PF02002.12 gi|345004452|ref|YP_004807305.1| - 0.041 13.3 0.0 0.05 13.1 0.0 1.2 1 0 0 1 1 1 0 TFIIE alpha subunit HTH_5 PF01022.15 gi|345004452|ref|YP_004807305.1| - 0.08 12.6 0.0 0.11 12.1 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family MarR_2 PF12802.2 gi|345004452|ref|YP_004807305.1| - 0.089 12.4 0.1 0.13 11.9 0.1 1.2 1 0 0 1 1 1 0 MarR family Connexin50 PF03509.9 gi|345004452|ref|YP_004807305.1| - 0.11 12.8 0.0 0.25 11.6 0.0 1.6 1 0 0 1 1 1 0 Gap junction alpha-8 protein (Cx50) DUF4364 PF14277.1 gi|345004452|ref|YP_004807305.1| - 0.15 11.6 0.0 0.24 11.0 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) GTP_EFTU PF00009.22 gi|345004453|ref|YP_004807306.1| - 2.3e-31 108.7 0.0 4e-31 107.9 0.0 1.3 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D3 PF03143.12 gi|345004453|ref|YP_004807306.1| - 3.7e-15 55.9 0.0 8.8e-15 54.6 0.0 1.7 1 0 0 1 1 1 1 Elongation factor Tu C-terminal domain GTP_EFTU_D2 PF03144.20 gi|345004453|ref|YP_004807306.1| - 3.7e-09 36.5 0.4 1.2e-08 34.9 0.3 2.0 1 0 0 1 1 1 1 Elongation factor Tu domain 2 GTP_EFTU_D4 PF14578.1 gi|345004453|ref|YP_004807306.1| - 0.0038 16.8 0.1 0.008 15.7 0.1 1.5 1 0 0 1 1 1 1 Elongation factor Tu domain 4 ATP_bind_1 PF03029.12 gi|345004453|ref|YP_004807306.1| - 0.0039 16.7 0.1 0.034 13.6 0.0 2.0 2 0 0 2 2 2 1 Conserved hypothetical ATP binding protein MMR_HSR1 PF01926.18 gi|345004453|ref|YP_004807306.1| - 0.088 12.7 0.0 0.19 11.7 0.0 1.5 1 0 0 1 1 1 0 50S ribosome-binding GTPase DUF4423 PF14394.1 gi|345004454|ref|YP_004807307.1| - 0.062 12.8 0.0 3.1 7.3 0.0 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4423) MCH PF02289.11 gi|345004455|ref|YP_004807308.1| - 1.2e-82 277.4 0.1 1.4e-82 277.2 0.0 1.0 1 0 0 1 1 1 1 Cyclohydrolase (MCH) DUF77 PF01910.12 gi|345004456|ref|YP_004807309.1| - 1.5e-21 75.8 0.1 1.7e-21 75.6 0.1 1.0 1 0 0 1 1 1 1 Domain of unknown function DUF77 Amidase PF01425.16 gi|345004457|ref|YP_004807310.1| - 6e-111 371.4 0.2 6.9e-111 371.2 0.1 1.0 1 0 0 1 1 1 1 Amidase PAS_9 PF13426.1 gi|345004458|ref|YP_004807311.1| - 2.2e-22 79.4 0.1 3.9e-22 78.5 0.1 1.4 1 0 0 1 1 1 1 PAS domain PAS PF00989.19 gi|345004458|ref|YP_004807311.1| - 2.8e-09 36.7 0.1 6e-09 35.6 0.1 1.6 1 0 0 1 1 1 1 PAS fold PAS_4 PF08448.5 gi|345004458|ref|YP_004807311.1| - 2e-08 34.2 0.4 5.1e-08 32.9 0.1 1.9 2 0 0 2 2 2 1 PAS fold PAS_8 PF13188.1 gi|345004458|ref|YP_004807311.1| - 5.6e-06 26.0 0.0 0.00012 21.8 0.0 2.6 2 0 0 2 2 2 1 PAS domain PAS_3 PF08447.6 gi|345004458|ref|YP_004807311.1| - 5.2e-05 23.2 0.0 9.8e-05 22.3 0.0 1.5 1 0 0 1 1 1 1 PAS fold SPOB_a PF14689.1 gi|345004458|ref|YP_004807311.1| - 0.00091 18.7 0.5 0.0019 17.7 0.4 1.5 1 0 0 1 1 1 1 Sensor_kinase_SpoOB-type, alpha-helical domain HisKA PF00512.20 gi|345004458|ref|YP_004807311.1| - 0.034 14.1 0.9 0.097 12.6 0.6 1.8 1 0 0 1 1 1 0 His Kinase A (phospho-acceptor) domain Aminotran_5 PF00266.14 gi|345004459|ref|YP_004807312.1| - 1e-31 110.0 0.0 1.4e-31 109.6 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.12 gi|345004459|ref|YP_004807312.1| - 0.002 17.2 0.8 0.035 13.1 0.5 2.1 2 0 0 2 2 2 1 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.15 gi|345004459|ref|YP_004807312.1| - 0.0068 14.7 0.0 0.01 14.1 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme HAD PF12710.2 gi|345004460|ref|YP_004807313.1| - 1.9e-21 77.0 0.2 2.3e-21 76.8 0.1 1.1 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|345004460|ref|YP_004807313.1| - 6.3e-14 52.9 1.6 1.6e-09 38.5 0.3 2.2 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|345004460|ref|YP_004807313.1| - 2.6e-11 43.5 0.1 6.1e-09 35.8 0.0 2.8 3 0 0 3 3 3 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.1 gi|345004460|ref|YP_004807313.1| - 2.9e-05 24.3 0.1 5.5e-05 23.4 0.0 1.6 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase 2-Hacid_dh_C PF02826.14 gi|345004461|ref|YP_004807314.1| - 9.8e-60 200.7 0.0 1.7e-59 199.9 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.25 gi|345004461|ref|YP_004807314.1| - 1.1e-36 125.2 1.2 1.9e-35 121.2 0.4 2.1 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NAD_binding_2 PF03446.10 gi|345004461|ref|YP_004807314.1| - 9.9e-05 22.2 0.0 0.00074 19.3 0.0 2.4 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase ACT PF01842.20 gi|345004461|ref|YP_004807314.1| - 0.0004 19.8 2.2 0.0013 18.1 0.0 2.9 3 0 0 3 3 3 1 ACT domain IlvN PF07991.7 gi|345004461|ref|YP_004807314.1| - 0.00053 19.4 0.0 0.0033 16.8 0.0 2.3 2 1 0 2 2 2 1 Acetohydroxy acid isomeroreductase, catalytic domain TrkA_N PF02254.13 gi|345004461|ref|YP_004807314.1| - 0.00098 19.1 0.7 0.026 14.4 0.0 3.3 3 0 0 3 3 3 1 TrkA-N domain ELFV_dehydrog PF00208.16 gi|345004461|ref|YP_004807314.1| - 0.0012 18.4 0.0 0.0037 16.8 0.0 1.8 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase UDPG_MGDP_dh_C PF03720.10 gi|345004461|ref|YP_004807314.1| - 0.0038 17.3 0.0 0.018 15.1 0.0 2.2 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain F420_oxidored PF03807.12 gi|345004461|ref|YP_004807314.1| - 0.016 15.5 2.4 0.088 13.2 0.0 3.3 4 0 0 4 4 4 0 NADP oxidoreductase coenzyme F420-dependent AlaDh_PNT_C PF01262.16 gi|345004461|ref|YP_004807314.1| - 0.03 13.9 0.1 1.3 8.5 0.0 2.3 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_7 PF13241.1 gi|345004461|ref|YP_004807314.1| - 0.042 14.1 0.1 0.15 12.3 0.0 2.1 2 0 0 2 2 2 0 Putative NAD(P)-binding Peptidase_M20 PF01546.23 gi|345004462|ref|YP_004807315.1| - 1.2e-26 93.3 0.1 2.1e-26 92.5 0.1 1.4 1 1 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.9 gi|345004462|ref|YP_004807315.1| - 1.4e-21 76.3 0.0 5.4e-21 74.4 0.0 1.9 2 0 0 2 2 2 1 Peptidase dimerisation domain OrfB_Zn_ribbon PF07282.6 gi|345004463|ref|YP_004807316.1| - 2.9e-22 78.0 0.5 2.4e-21 75.1 0.6 2.2 2 0 0 2 2 2 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.14 gi|345004463|ref|YP_004807316.1| - 4.5e-07 29.4 0.0 7.4e-07 28.7 0.0 1.5 1 1 0 1 1 1 1 Probable transposase C1_3 PF07649.7 gi|345004463|ref|YP_004807316.1| - 0.028 14.4 2.0 0.05 13.6 1.4 1.4 1 0 0 1 1 1 0 C1-like domain Pox_A_type_inc PF04508.7 gi|345004463|ref|YP_004807316.1| - 0.091 12.5 1.0 0.29 11.0 0.7 1.9 1 0 0 1 1 1 0 Viral A-type inclusion protein repeat PHD PF00628.24 gi|345004463|ref|YP_004807316.1| - 0.37 10.5 3.5 0.24 11.1 0.9 1.8 2 0 0 2 2 2 0 PHD-finger TAT_signal PF10518.4 gi|345004465|ref|YP_004807318.1| - 0.011 15.6 4.5 0.025 14.5 3.1 1.6 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Trypsin_2 PF13365.1 gi|345004467|ref|YP_004807320.1| - 0.00014 21.7 0.2 0.0069 16.3 0.0 2.3 1 1 1 2 2 2 2 Trypsin-like peptidase domain Aminotran_1_2 PF00155.16 gi|345004469|ref|YP_004807322.1| - 1.2e-38 133.0 0.0 1.4e-38 132.7 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_MocR PF12897.2 gi|345004469|ref|YP_004807322.1| - 3.7e-14 52.1 0.0 5.1e-14 51.6 0.0 1.3 1 0 0 1 1 1 1 Alanine-glyoxylate amino-transferase THDPS_M PF14789.1 gi|345004470|ref|YP_004807323.1| - 0.12 12.3 0.1 3.4 7.6 0.0 2.0 2 0 0 2 2 2 0 Tetrahydrodipicolinate N-succinyltransferase middle Arginosuc_synth PF00764.14 gi|345004471|ref|YP_004807324.1| - 6e-142 473.2 0.0 7e-142 473.0 0.0 1.0 1 0 0 1 1 1 1 Arginosuccinate synthase Asn_synthase PF00733.16 gi|345004471|ref|YP_004807324.1| - 2.8e-05 23.7 0.0 4.3e-05 23.1 0.0 1.3 1 0 0 1 1 1 1 Asparagine synthase QueC PF06508.8 gi|345004471|ref|YP_004807324.1| - 8e-05 22.0 0.0 0.00014 21.2 0.0 1.4 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC NAD_synthase PF02540.12 gi|345004471|ref|YP_004807324.1| - 0.00054 18.9 0.0 0.00068 18.6 0.0 1.2 1 0 0 1 1 1 1 NAD synthase tRNA_Me_trans PF03054.11 gi|345004471|ref|YP_004807324.1| - 0.0072 14.9 0.0 0.011 14.3 0.0 1.2 1 0 0 1 1 1 1 tRNA methyl transferase ArgK PF03308.11 gi|345004471|ref|YP_004807324.1| - 0.075 11.7 0.1 0.16 10.6 0.1 1.5 1 0 0 1 1 1 0 ArgK protein ATP_bind_3 PF01171.15 gi|345004471|ref|YP_004807324.1| - 0.097 12.1 0.0 0.31 10.5 0.0 1.9 2 0 0 2 2 2 0 PP-loop family Lyase_1 PF00206.15 gi|345004472|ref|YP_004807325.1| - 3.1e-49 167.8 1.6 3.1e-49 167.8 0.0 1.7 2 0 0 2 2 2 1 Lyase ASL_C2 PF14698.1 gi|345004472|ref|YP_004807325.1| - 5.4e-11 42.4 2.8 1.7e-10 40.7 1.9 2.0 1 0 0 1 1 1 1 Argininosuccinate lyase C-terminal zf-IS66 PF13005.2 gi|345004473|ref|YP_004807326.1| - 0.0077 16.1 3.6 0.041 13.8 0.2 2.1 1 1 1 2 2 2 1 zinc-finger binding domain of transposase IS66 DNA_RNApol_7kD PF03604.8 gi|345004473|ref|YP_004807326.1| - 0.087 12.3 1.1 0.75 9.3 0.1 2.0 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit DUF3133 PF11331.3 gi|345004473|ref|YP_004807326.1| - 0.11 12.1 0.1 0.16 11.5 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3133) TF_Zn_Ribbon PF08271.7 gi|345004473|ref|YP_004807326.1| - 0.16 11.3 5.0 0.23 10.7 3.5 1.3 1 1 0 1 1 1 0 TFIIB zinc-binding Zn-ribbon_8 PF09723.5 gi|345004473|ref|YP_004807326.1| - 0.17 11.8 0.5 7.4 6.6 0.0 2.1 2 0 0 2 2 2 0 Zinc ribbon domain Prok-RING_1 PF14446.1 gi|345004473|ref|YP_004807326.1| - 1.8 8.3 4.0 3.7 7.3 2.8 1.5 1 1 0 1 1 1 0 Prokaryotic RING finger family 1 RimK PF08443.6 gi|345004474|ref|YP_004807327.1| - 2.6e-42 144.4 0.0 4e-42 143.8 0.0 1.2 1 0 0 1 1 1 1 RimK-like ATP-grasp domain ATP-grasp_4 PF13535.1 gi|345004474|ref|YP_004807327.1| - 1e-18 67.7 0.1 1.6e-18 67.0 0.1 1.3 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_3 PF02655.9 gi|345004474|ref|YP_004807327.1| - 7.9e-13 48.5 0.0 1.1e-12 48.1 0.0 1.1 1 0 0 1 1 1 1 ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|345004474|ref|YP_004807327.1| - 1.9e-10 39.9 0.0 3e-10 39.3 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon GSH-S_ATP PF02955.11 gi|345004474|ref|YP_004807327.1| - 2.3e-09 36.6 0.0 3.4e-09 36.0 0.0 1.2 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, ATP-grasp domain ATP-grasp_5 PF13549.1 gi|345004474|ref|YP_004807327.1| - 2e-06 27.1 0.0 8.4e-06 25.1 0.0 2.1 1 1 1 2 2 2 1 ATP-grasp domain ATP-grasp PF02222.17 gi|345004474|ref|YP_004807327.1| - 1e-05 24.9 0.0 3.6e-05 23.2 0.0 1.8 1 1 0 1 1 1 1 ATP-grasp domain CPSase_L_D2 PF02786.12 gi|345004474|ref|YP_004807327.1| - 1.1e-05 24.8 0.0 1.9e-05 24.0 0.0 1.4 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain Dala_Dala_lig_C PF07478.8 gi|345004474|ref|YP_004807327.1| - 0.054 12.8 0.0 0.24 10.7 0.0 1.9 1 1 0 1 1 1 0 D-ala D-ala ligase C-terminus Semialdhyde_dh PF01118.19 gi|345004475|ref|YP_004807328.1| - 6.1e-24 84.6 0.0 1.3e-23 83.5 0.0 1.6 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain Semialdhyde_dhC PF02774.13 gi|345004475|ref|YP_004807328.1| - 4.6e-07 29.8 0.0 9.1e-07 28.9 0.0 1.6 1 1 0 1 1 1 1 Semialdehyde dehydrogenase, dimerisation domain DapB_N PF01113.15 gi|345004475|ref|YP_004807328.1| - 0.011 15.5 0.0 0.064 13.1 0.0 2.1 3 0 0 3 3 3 0 Dihydrodipicolinate reductase, N-terminus AA_kinase PF00696.23 gi|345004476|ref|YP_004807329.1| - 2.3e-32 112.4 0.5 2.7e-32 112.2 0.4 1.1 1 0 0 1 1 1 1 Amino acid kinase family Aminotran_3 PF00202.16 gi|345004477|ref|YP_004807330.1| - 3.1e-93 312.3 0.0 3.6e-93 312.1 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-III Cys_Met_Meta_PP PF01053.15 gi|345004477|ref|YP_004807330.1| - 0.013 13.8 0.0 0.2 9.9 0.0 2.1 2 0 0 2 2 2 0 Cys/Met metabolism PLP-dependent enzyme Peptidase_M20 PF01546.23 gi|345004478|ref|YP_004807331.1| - 7.8e-22 77.7 0.6 1.2e-21 77.0 0.4 1.3 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.9 gi|345004478|ref|YP_004807331.1| - 2.6e-07 30.3 0.0 5.6e-07 29.3 0.0 1.5 1 0 0 1 1 1 1 Peptidase dimerisation domain OTCace PF00185.19 gi|345004479|ref|YP_004807332.1| - 2e-45 154.5 0.0 3.3e-45 153.8 0.0 1.3 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain OTCace_N PF02729.16 gi|345004479|ref|YP_004807332.1| - 3.4e-44 149.9 0.0 4.6e-44 149.5 0.0 1.2 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain FmdA_AmdA PF03069.10 gi|345004480|ref|YP_004807333.1| - 4.3e-43 147.4 4.1 1.7e-23 82.9 0.5 2.1 1 1 1 2 2 2 2 Acetamidase/Formamidase family TRAM PF01938.15 gi|345004480|ref|YP_004807333.1| - 0.057 13.2 0.3 0.12 12.1 0.2 1.5 1 0 0 1 1 1 0 TRAM domain HMGL-like PF00682.14 gi|345004481|ref|YP_004807334.1| - 2.6e-47 161.4 0.5 2.6e-47 161.4 0.3 1.5 2 0 0 2 2 2 1 HMGL-like CoA_transf_3 PF02515.12 gi|345004482|ref|YP_004807335.1| - 4.2e-63 212.0 0.2 6.9e-63 211.3 0.1 1.4 1 0 0 1 1 1 1 CoA-transferase family III HTH_31 PF13560.1 gi|345004482|ref|YP_004807335.1| - 0.019 15.1 0.7 0.69 10.1 0.1 3.0 3 0 0 3 3 3 0 Helix-turn-helix domain ABC_tran PF00005.22 gi|345004483|ref|YP_004807336.1| - 5.3e-33 114.2 0.0 9.1e-33 113.4 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|345004483|ref|YP_004807336.1| - 6.7e-09 36.1 0.0 0.00046 20.2 0.0 2.1 2 0 0 2 2 2 2 AAA domain TOBE_2 PF08402.5 gi|345004483|ref|YP_004807336.1| - 1.5e-08 34.4 0.6 5.4e-08 32.7 0.3 2.1 2 0 0 2 2 1 1 TOBE domain AAA_16 PF13191.1 gi|345004483|ref|YP_004807336.1| - 0.00083 19.3 0.0 0.0017 18.3 0.0 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|345004483|ref|YP_004807336.1| - 0.0021 18.1 1.1 0.0067 16.5 0.8 1.9 1 1 0 1 1 1 1 AAA domain AAA_25 PF13481.1 gi|345004483|ref|YP_004807336.1| - 0.0033 16.8 0.0 0.011 15.1 0.0 1.9 2 0 0 2 2 2 1 AAA domain SMC_N PF02463.14 gi|345004483|ref|YP_004807336.1| - 0.0039 16.4 0.1 1.3 8.2 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_15 PF13175.1 gi|345004483|ref|YP_004807336.1| - 0.0063 15.6 0.0 0.35 9.8 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain AAA_29 PF13555.1 gi|345004483|ref|YP_004807336.1| - 0.011 15.2 0.1 0.024 14.1 0.1 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_28 PF13521.1 gi|345004483|ref|YP_004807336.1| - 0.013 15.4 0.7 0.24 11.3 0.0 2.4 2 0 0 2 2 2 0 AAA domain TOBE PF03459.12 gi|345004483|ref|YP_004807336.1| - 0.014 15.4 3.0 0.26 11.4 0.5 3.2 2 1 0 2 2 2 0 TOBE domain AAA PF00004.24 gi|345004483|ref|YP_004807336.1| - 0.014 15.5 0.3 0.037 14.2 0.2 1.9 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_17 PF13207.1 gi|345004483|ref|YP_004807336.1| - 0.016 16.0 0.1 0.048 14.4 0.1 2.0 1 1 0 1 1 1 0 AAA domain DUF258 PF03193.11 gi|345004483|ref|YP_004807336.1| - 0.017 14.3 0.0 0.029 13.5 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_23 PF13476.1 gi|345004483|ref|YP_004807336.1| - 0.019 15.3 0.5 0.032 14.5 0.1 1.5 2 0 0 2 2 2 0 AAA domain Rad17 PF03215.10 gi|345004483|ref|YP_004807336.1| - 0.037 12.7 0.1 0.055 12.1 0.0 1.1 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein AAA_14 PF13173.1 gi|345004483|ref|YP_004807336.1| - 0.071 13.0 0.0 0.2 11.5 0.0 1.8 2 0 0 2 2 2 0 AAA domain NB-ARC PF00931.17 gi|345004483|ref|YP_004807336.1| - 0.087 11.6 0.0 0.12 11.2 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain AAA_19 PF13245.1 gi|345004483|ref|YP_004807336.1| - 0.089 12.5 0.3 0.25 11.1 0.2 2.0 1 1 0 1 1 1 0 Part of AAA domain AAA_33 PF13671.1 gi|345004483|ref|YP_004807336.1| - 0.11 12.3 0.0 0.19 11.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain ATP-synt_ab PF00006.20 gi|345004483|ref|YP_004807336.1| - 0.11 11.9 0.1 0.26 10.7 0.1 1.4 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain Miro PF08477.8 gi|345004483|ref|YP_004807336.1| - 0.12 12.9 0.0 0.39 11.2 0.0 1.9 2 0 0 2 2 1 0 Miro-like protein NACHT PF05729.7 gi|345004483|ref|YP_004807336.1| - 0.14 11.7 0.1 0.3 10.7 0.1 1.5 1 0 0 1 1 1 0 NACHT domain BPD_transp_1 PF00528.17 gi|345004484|ref|YP_004807337.1| - 1e-14 54.4 19.0 1e-14 54.4 13.2 2.4 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component DUF677 PF05055.7 gi|345004484|ref|YP_004807337.1| - 0.1 11.2 1.7 0.2 10.3 1.2 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF677) BPD_transp_1 PF00528.17 gi|345004485|ref|YP_004807338.1| - 1.1e-18 67.4 17.7 1.1e-18 67.4 12.3 2.0 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_8 PF13416.1 gi|345004486|ref|YP_004807339.1| - 5.8e-21 75.4 10.0 1e-20 74.6 6.9 1.4 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.20 gi|345004486|ref|YP_004807339.1| - 3.1e-16 60.0 9.1 3.1e-16 60.0 6.3 1.5 2 0 0 2 2 2 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.1 gi|345004486|ref|YP_004807339.1| - 0.00019 21.1 0.5 0.00095 18.8 0.4 2.3 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein Pex19 PF04614.7 gi|345004486|ref|YP_004807339.1| - 0.083 12.4 0.0 0.15 11.6 0.0 1.3 1 0 0 1 1 1 0 Pex19 protein family HTH_10 PF04967.7 gi|345004487|ref|YP_004807340.1| - 1.7e-20 72.3 0.1 2.6e-20 71.7 0.1 1.3 1 0 0 1 1 1 1 HTH DNA binding domain PEP_mutase PF13714.1 gi|345004488|ref|YP_004807341.1| - 0.011 14.9 0.1 0.013 14.7 0.0 1.1 1 0 0 1 1 1 0 Phosphoenolpyruvate phosphomutase MFS_1 PF07690.11 gi|345004489|ref|YP_004807342.1| - 3.5e-53 180.5 80.3 3.6e-41 141.0 33.1 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|345004489|ref|YP_004807342.1| - 4.1e-06 25.6 11.4 4.1e-06 25.6 7.9 2.8 1 1 1 3 3 3 2 Sugar (and other) transporter MFS_1_like PF12832.2 gi|345004489|ref|YP_004807342.1| - 0.00095 18.9 11.3 0.062 13.1 0.6 3.8 3 1 1 4 4 4 2 MFS_1 like family ASC PF00858.19 gi|345004489|ref|YP_004807342.1| - 0.31 9.6 0.0 0.46 9.0 0.0 1.1 1 0 0 1 1 1 0 Amiloride-sensitive sodium channel AFOR_C PF01314.13 gi|345004490|ref|YP_004807343.1| - 3.9e-107 358.2 1.7 5.3e-107 357.8 1.2 1.1 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.10 gi|345004490|ref|YP_004807343.1| - 3e-61 206.2 0.0 4.3e-61 205.7 0.0 1.2 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain DUF3052 PF11253.3 gi|345004490|ref|YP_004807343.1| - 0.041 13.4 0.0 0.088 12.4 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3052) Abhydrolase_3 PF07859.8 gi|345004491|ref|YP_004807344.1| - 1.1e-64 217.9 0.5 1.4e-64 217.5 0.4 1.1 1 0 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_5 PF12695.2 gi|345004491|ref|YP_004807344.1| - 4e-07 29.8 0.3 8.8e-07 28.7 0.1 1.7 1 1 0 1 1 1 1 Alpha/beta hydrolase family COesterase PF00135.23 gi|345004491|ref|YP_004807344.1| - 2.8e-06 26.3 0.0 7e-06 25.0 0.0 1.5 1 1 0 1 1 1 1 Carboxylesterase family Peptidase_S9 PF00326.16 gi|345004491|ref|YP_004807344.1| - 0.016 14.3 0.2 0.045 12.9 0.1 1.6 2 0 0 2 2 2 0 Prolyl oligopeptidase family Peptidase_S15 PF02129.13 gi|345004491|ref|YP_004807344.1| - 0.024 14.0 0.0 1.1 8.6 0.0 2.2 2 0 0 2 2 2 0 X-Pro dipeptidyl-peptidase (S15 family) Thioesterase PF00975.15 gi|345004491|ref|YP_004807344.1| - 0.09 12.9 0.1 0.12 12.5 0.1 1.2 1 0 0 1 1 1 0 Thioesterase domain CbiA PF01656.18 gi|345004492|ref|YP_004807345.1| - 1.7e-27 96.0 0.0 2.1e-27 95.7 0.0 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|345004492|ref|YP_004807345.1| - 4.1e-10 39.8 0.0 1.1e-09 38.4 0.0 1.7 1 1 0 1 1 1 1 AAA domain MipZ PF09140.6 gi|345004492|ref|YP_004807345.1| - 2.1e-05 23.7 0.5 0.0083 15.2 0.1 2.4 2 0 0 2 2 2 2 ATPase MipZ ArsA_ATPase PF02374.10 gi|345004492|ref|YP_004807345.1| - 0.00018 20.6 0.2 0.017 14.1 0.1 2.2 2 0 0 2 2 2 2 Anion-transporting ATPase AAA_17 PF13207.1 gi|345004492|ref|YP_004807345.1| - 0.0012 19.6 1.3 0.0021 18.8 0.1 2.0 2 1 0 2 2 2 1 AAA domain AAA_18 PF13238.1 gi|345004492|ref|YP_004807345.1| - 0.0024 18.1 0.0 0.02 15.2 0.0 2.3 3 0 0 3 3 3 1 AAA domain YhjQ PF06564.7 gi|345004492|ref|YP_004807345.1| - 0.13 11.5 0.2 0.79 9.0 0.1 1.8 2 0 0 2 2 2 0 YhjQ protein Peptidase_M20 PF01546.23 gi|345004494|ref|YP_004807347.1| - 1.1e-32 113.1 0.1 1.6e-32 112.5 0.1 1.3 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.9 gi|345004494|ref|YP_004807347.1| - 1.3e-13 50.7 0.0 2.5e-13 49.7 0.0 1.5 1 0 0 1 1 1 1 Peptidase dimerisation domain Peptidase_M28 PF04389.12 gi|345004494|ref|YP_004807347.1| - 0.00015 21.5 0.0 0.00024 20.8 0.0 1.3 1 0 0 1 1 1 1 Peptidase family M28 HMA PF00403.21 gi|345004495|ref|YP_004807348.1| - 9.4e-14 51.3 0.1 1e-13 51.1 0.1 1.0 1 0 0 1 1 1 1 Heavy-metal-associated domain Tubulin PF00091.20 gi|345004496|ref|YP_004807349.1| - 1.5e-15 57.6 0.0 5.2e-15 55.8 0.0 1.9 1 1 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain Tubulin_2 PF13809.1 gi|345004496|ref|YP_004807349.1| - 0.14 11.1 0.1 0.55 9.1 0.1 1.8 1 1 0 2 2 2 0 Tubulin like Cupin_2 PF07883.6 gi|345004497|ref|YP_004807350.1| - 1.2e-11 43.9 0.6 1.6e-11 43.5 0.4 1.2 1 0 0 1 1 1 1 Cupin domain Cupin_3 PF05899.7 gi|345004497|ref|YP_004807350.1| - 0.00069 18.9 0.2 0.0013 18.0 0.1 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF861) Zn-ribbon_8 PF09723.5 gi|345004497|ref|YP_004807350.1| - 0.0024 17.7 1.5 0.0039 17.1 1.0 1.3 1 0 0 1 1 1 1 Zinc ribbon domain zf-ribbon_3 PF13248.1 gi|345004497|ref|YP_004807350.1| - 0.011 14.9 1.5 0.031 13.4 1.0 1.7 1 1 0 1 1 1 0 zinc-ribbon domain Cupin_1 PF00190.17 gi|345004497|ref|YP_004807350.1| - 0.021 14.2 0.0 0.027 13.9 0.0 1.1 1 0 0 1 1 1 0 Cupin zinc_ribbon_2 PF13240.1 gi|345004497|ref|YP_004807350.1| - 0.025 14.0 0.8 0.36 10.3 0.1 2.4 2 0 0 2 2 2 0 zinc-ribbon domain Nudix_N_2 PF14803.1 gi|345004497|ref|YP_004807350.1| - 0.066 12.9 1.6 1.2 8.8 1.0 2.4 1 1 1 2 2 2 0 Nudix N-terminal Lar_restr_allev PF14354.1 gi|345004497|ref|YP_004807350.1| - 0.085 13.1 1.3 0.17 12.1 0.9 1.6 1 0 0 1 1 1 0 Restriction alleviation protein Lar CoA_transf_3 PF02515.12 gi|345004498|ref|YP_004807351.1| - 7.1e-67 224.3 0.0 1.2e-66 223.5 0.0 1.4 1 0 0 1 1 1 1 CoA-transferase family III AAA_3 PF07726.6 gi|345004499|ref|YP_004807352.1| - 1.1e-65 219.1 0.0 1.9e-65 218.3 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|345004499|ref|YP_004807352.1| - 6.8e-14 51.7 0.0 1.6e-13 50.5 0.0 1.6 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA PF00004.24 gi|345004499|ref|YP_004807352.1| - 9.3e-06 25.8 0.0 7.3e-05 22.9 0.0 2.3 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) MCM PF00493.18 gi|345004499|ref|YP_004807352.1| - 2.9e-05 23.0 0.0 0.046 12.5 0.0 2.3 2 1 0 2 2 2 2 MCM2/3/5 family Sigma54_activat PF00158.21 gi|345004499|ref|YP_004807352.1| - 7.2e-05 22.3 0.0 0.00023 20.6 0.0 1.7 1 1 0 1 1 1 1 Sigma-54 interaction domain Mg_chelatase PF01078.16 gi|345004499|ref|YP_004807352.1| - 0.0026 16.9 0.1 0.17 11.0 0.0 2.2 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI RuvB_N PF05496.7 gi|345004499|ref|YP_004807352.1| - 0.071 12.1 0.0 0.44 9.5 0.0 2.2 1 1 0 1 1 1 0 Holliday junction DNA helicase ruvB N-terminus DUF45 PF01863.12 gi|345004500|ref|YP_004807353.1| - 4e-50 170.4 0.0 5e-50 170.1 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF45 WLM PF08325.5 gi|345004500|ref|YP_004807353.1| - 0.0008 19.3 0.2 0.0015 18.4 0.1 1.4 1 0 0 1 1 1 1 WLM domain SprT-like PF10263.4 gi|345004500|ref|YP_004807353.1| - 0.0037 16.9 0.0 0.0063 16.1 0.0 1.3 1 0 0 1 1 1 1 SprT-like family LMWPc PF01451.16 gi|345004501|ref|YP_004807354.1| - 1e-20 74.4 0.0 1.2e-20 74.2 0.0 1.1 1 0 0 1 1 1 1 Low molecular weight phosphotyrosine protein phosphatase YflT PF11181.3 gi|345004502|ref|YP_004807355.1| - 0.14 12.2 0.0 0.32 11.1 0.0 1.5 1 0 0 1 1 1 0 Heat induced stress protein YflT UvrD-helicase PF00580.16 gi|345004503|ref|YP_004807356.1| - 4.2e-16 59.1 0.0 1e-15 57.8 0.0 1.5 2 0 0 2 2 2 1 UvrD/REP helicase N-terminal domain PDDEXK_1 PF12705.2 gi|345004503|ref|YP_004807356.1| - 2.8e-09 36.7 0.0 7.2e-09 35.3 0.0 1.7 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily AAA_30 PF13604.1 gi|345004503|ref|YP_004807356.1| - 5e-07 29.4 0.2 0.00026 20.6 0.0 2.4 2 0 0 2 2 2 2 AAA domain UvrD_C PF13361.1 gi|345004503|ref|YP_004807356.1| - 8.7e-06 25.4 0.0 1.5e-05 24.6 0.0 1.4 1 0 0 1 1 1 1 UvrD-like helicase C-terminal domain UvrD_C_2 PF13538.1 gi|345004503|ref|YP_004807356.1| - 0.00016 21.7 0.2 0.086 12.9 0.3 2.7 2 0 0 2 2 2 1 UvrD-like helicase C-terminal domain AAA_11 PF13086.1 gi|345004503|ref|YP_004807356.1| - 0.00027 20.5 0.0 0.0016 18.0 0.0 2.0 2 0 0 2 2 2 1 AAA domain Viral_helicase1 PF01443.13 gi|345004503|ref|YP_004807356.1| - 0.002 17.7 0.8 0.27 10.7 0.0 3.1 3 0 0 3 3 3 1 Viral (Superfamily 1) RNA helicase AAA_19 PF13245.1 gi|345004503|ref|YP_004807356.1| - 0.006 16.3 0.0 0.035 13.8 0.0 2.4 1 0 0 1 1 1 1 Part of AAA domain AAA_22 PF13401.1 gi|345004503|ref|YP_004807356.1| - 0.023 14.8 0.0 11 6.1 0.0 2.5 2 0 0 2 2 2 0 AAA domain PhoH PF02562.11 gi|345004503|ref|YP_004807356.1| - 0.054 12.7 0.0 0.14 11.3 0.0 1.6 2 0 0 2 2 2 0 PhoH-like protein DUF2075 PF09848.4 gi|345004503|ref|YP_004807356.1| - 0.46 9.4 0.0 23 3.8 0.0 2.1 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) NTP_transf_3 PF12804.2 gi|345004504|ref|YP_004807357.1| - 3.8e-35 121.3 1.0 4.6e-35 121.0 0.7 1.0 1 0 0 1 1 1 1 MobA-like NTP transferase domain NTP_transferase PF00483.18 gi|345004504|ref|YP_004807357.1| - 1.9e-05 24.1 0.0 2.3e-05 23.8 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase Beta-lactamase PF00144.19 gi|345004505|ref|YP_004807358.1| - 6.6e-56 189.7 2.5 9.7e-56 189.1 1.7 1.2 1 0 0 1 1 1 1 Beta-lactamase Pab87_oct PF13969.1 gi|345004505|ref|YP_004807358.1| - 7.2e-18 64.4 0.0 1.8e-17 63.2 0.0 1.7 1 0 0 1 1 1 1 Pab87 octamerisation domain Cyto_ox_2 PF02322.10 gi|345004506|ref|YP_004807359.1| - 0.018 14.1 3.7 0.018 14.2 2.6 1.0 1 0 0 1 1 1 0 Cytochrome oxidase subunit II DUF4013 PF13197.1 gi|345004506|ref|YP_004807359.1| - 0.054 12.8 4.3 0.055 12.8 3.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF4013) DUF4134 PF13572.1 gi|345004506|ref|YP_004807359.1| - 0.063 13.3 2.4 0.069 13.2 1.6 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4134) Gate PF07670.9 gi|345004506|ref|YP_004807359.1| - 0.14 12.0 1.6 0.16 11.8 1.1 1.1 1 0 0 1 1 1 0 Nucleoside recognition SseC PF04888.7 gi|345004506|ref|YP_004807359.1| - 1.2 8.3 9.7 1.6 8.0 6.7 1.1 1 0 0 1 1 1 0 Secretion system effector C (SseC) like family CopD PF05425.8 gi|345004506|ref|YP_004807359.1| - 7.7 6.7 8.4 13 6.0 5.8 1.4 1 1 0 1 1 1 0 Copper resistance protein D Cytochrom_B_N PF00033.14 gi|345004508|ref|YP_004807361.1| - 3.5e-23 81.9 19.7 3.5e-23 81.9 13.7 1.9 2 1 0 2 2 2 1 Cytochrome b(N-terminal)/b6/petB Ni_hydr_CYTB PF01292.15 gi|345004508|ref|YP_004807361.1| - 9.7e-19 67.4 17.2 9.7e-19 67.4 11.9 1.7 2 1 0 2 2 2 1 Prokaryotic cytochrome b561 DUF3796 PF12676.2 gi|345004508|ref|YP_004807361.1| - 0.02 15.0 1.2 0.02 15.0 0.9 3.1 3 0 0 3 3 3 0 Protein of unknown function (DUF3796) DUF2568 PF10823.3 gi|345004509|ref|YP_004807362.1| - 0.033 14.4 1.4 0.086 13.0 0.1 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF2568) DUF2029 PF09594.5 gi|345004509|ref|YP_004807362.1| - 0.057 12.9 3.8 0.069 12.6 2.6 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF2029) DUF2631 PF10939.3 gi|345004509|ref|YP_004807362.1| - 0.46 10.3 3.6 0.74 9.6 1.1 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF2631) Fer4_11 PF13247.1 gi|345004510|ref|YP_004807363.1| - 2.5e-22 78.6 15.5 7.9e-22 77.0 8.1 2.5 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|345004510|ref|YP_004807363.1| - 1e-14 54.6 24.5 3.7e-08 33.6 5.0 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|345004510|ref|YP_004807363.1| - 2e-12 47.1 25.5 8.6e-07 29.1 6.1 3.0 2 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|345004510|ref|YP_004807363.1| - 2.4e-10 40.0 27.2 6.8e-06 25.7 5.8 2.8 2 2 0 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|345004510|ref|YP_004807363.1| - 1.4e-07 31.4 21.7 3.6e-05 23.6 3.7 2.8 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.22 gi|345004510|ref|YP_004807363.1| - 3.2e-07 29.6 38.5 1.8e-05 24.1 1.9 5.3 5 0 0 5 5 5 3 4Fe-4S binding domain Fer4_2 PF12797.2 gi|345004510|ref|YP_004807363.1| - 2.5e-06 27.0 11.9 0.00048 19.8 1.1 4.4 4 1 0 4 4 3 3 4Fe-4S binding domain Fer4_3 PF12798.2 gi|345004510|ref|YP_004807363.1| - 3.8e-06 27.0 43.5 0.013 16.0 2.7 4.3 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_21 PF14697.1 gi|345004510|ref|YP_004807363.1| - 4.8e-05 23.1 28.8 0.00089 19.0 8.2 3.9 3 2 1 4 4 4 3 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|345004510|ref|YP_004807363.1| - 9.8e-05 23.0 25.9 0.27 11.9 0.6 4.7 2 1 2 4 4 4 3 4Fe-4S double cluster binding domain Fer4_6 PF12837.2 gi|345004510|ref|YP_004807363.1| - 0.00019 21.1 41.4 0.035 13.9 1.9 4.9 4 1 0 4 4 4 3 4Fe-4S binding domain Fer4_17 PF13534.1 gi|345004510|ref|YP_004807363.1| - 0.00092 19.5 26.0 0.034 14.4 5.4 3.9 2 2 1 3 3 3 3 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|345004510|ref|YP_004807363.1| - 0.001 19.2 34.9 0.0018 18.4 2.1 4.4 4 1 0 4 4 4 3 4Fe-4S binding domain Fer4_18 PF13746.1 gi|345004510|ref|YP_004807363.1| - 0.03 14.7 21.8 0.098 13.0 0.5 3.9 4 1 0 4 4 4 0 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|345004510|ref|YP_004807363.1| - 0.19 12.1 0.3 0.19 12.1 0.2 4.3 3 1 0 3 3 3 0 4Fe-4S single cluster domain Molybdopterin PF00384.17 gi|345004511|ref|YP_004807364.1| - 8.3e-50 169.7 0.1 1.2e-49 169.2 0.1 1.2 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.16 gi|345004511|ref|YP_004807364.1| - 1.9e-18 66.2 0.0 1.2e-17 63.7 0.0 2.3 2 0 0 2 2 2 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.11 gi|345004511|ref|YP_004807364.1| - 5.1e-13 48.6 0.2 1e-12 47.6 0.1 1.5 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain TAT_signal PF10518.4 gi|345004511|ref|YP_004807364.1| - 0.00027 20.7 2.6 0.00027 20.7 1.8 1.9 2 0 0 2 2 2 1 TAT (twin-arginine translocation) pathway signal sequence FlpD PF02662.11 gi|345004512|ref|YP_004807365.1| - 2.2e-22 79.0 0.0 1.6e-20 73.0 0.0 2.4 2 0 0 2 2 2 1 Methyl-viologen-reducing hydrogenase, delta subunit Fer4_7 PF12838.2 gi|345004512|ref|YP_004807365.1| - 8.6e-15 54.8 40.2 6.4e-08 32.8 8.0 5.4 4 2 2 6 6 6 4 4Fe-4S dicluster domain Fer4 PF00037.22 gi|345004512|ref|YP_004807365.1| - 6.6e-13 47.6 48.4 6.1e-06 25.6 1.5 7.9 8 0 0 8 8 8 5 4Fe-4S binding domain Fer4_9 PF13187.1 gi|345004512|ref|YP_004807365.1| - 1.7e-12 47.3 38.9 2.1e-06 27.8 6.8 5.6 5 1 2 7 7 7 5 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|345004512|ref|YP_004807365.1| - 5.4e-11 43.0 28.8 0.002 18.8 0.3 6.7 6 1 0 6 6 6 3 4Fe-4S double cluster binding domain Fer4_21 PF14697.1 gi|345004512|ref|YP_004807365.1| - 2e-09 37.1 36.5 2.8e-05 23.8 4.4 4.9 5 1 0 5 5 5 3 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|345004512|ref|YP_004807365.1| - 2.3e-08 34.2 17.5 0.017 15.4 0.1 5.7 5 0 0 5 5 5 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|345004512|ref|YP_004807365.1| - 1.3e-07 31.2 43.6 0.0016 18.1 9.1 5.4 3 2 2 5 5 5 5 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|345004512|ref|YP_004807365.1| - 1.2e-06 28.1 11.1 2.8e-05 23.7 1.6 7.3 10 0 0 10 10 9 4 4Fe-4S binding domain Fer4_8 PF13183.1 gi|345004512|ref|YP_004807365.1| - 7.8e-06 25.8 35.5 0.004 17.1 1.8 5.6 3 2 3 6 6 6 4 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|345004512|ref|YP_004807365.1| - 3.1e-05 23.6 43.1 0.00047 19.9 2.7 6.7 6 0 0 6 6 6 4 4Fe-4S binding domain Fer4_11 PF13247.1 gi|345004512|ref|YP_004807365.1| - 3.8e-05 23.5 17.1 0.00057 19.7 0.7 3.2 4 0 0 4 4 3 2 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|345004512|ref|YP_004807365.1| - 0.00014 22.1 38.5 0.072 13.5 2.6 6.3 5 2 2 7 7 7 3 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|345004512|ref|YP_004807365.1| - 0.026 14.8 4.1 0.026 14.8 2.8 6.8 7 0 0 7 7 7 0 4Fe-4S binding domain Nitrate_red_del PF02613.10 gi|345004513|ref|YP_004807366.1| - 1.4e-16 60.5 0.2 2e-16 60.0 0.1 1.2 1 0 0 1 1 1 1 Nitrate reductase delta subunit Zn-ribbon_8 PF09723.5 gi|345004516|ref|YP_004807369.1| - 0.00016 21.5 2.2 0.0002 21.2 1.5 1.1 1 0 0 1 1 1 1 Zinc ribbon domain RRN7 PF11781.3 gi|345004516|ref|YP_004807369.1| - 0.016 14.6 0.8 2.4 7.7 0.0 2.1 2 0 0 2 2 2 0 RNA polymerase I-specific transcription initiation factor Rrn7 HypA PF01155.14 gi|345004516|ref|YP_004807369.1| - 0.044 13.4 0.5 0.044 13.4 0.4 1.1 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family TF_Zn_Ribbon PF08271.7 gi|345004516|ref|YP_004807369.1| - 0.046 13.0 1.9 1.6 8.1 0.3 2.1 2 0 0 2 2 2 0 TFIIB zinc-binding zf-CHY PF05495.7 gi|345004516|ref|YP_004807369.1| - 0.049 13.7 1.1 0.058 13.5 0.7 1.1 1 0 0 1 1 1 0 CHY zinc finger DZR PF12773.2 gi|345004516|ref|YP_004807369.1| - 0.069 12.9 0.5 0.086 12.6 0.4 1.2 1 0 0 1 1 1 0 Double zinc ribbon RNHCP PF12647.2 gi|345004516|ref|YP_004807369.1| - 0.091 12.5 0.4 0.087 12.6 0.3 1.1 1 0 0 1 1 1 0 RNHCP domain DUF1451 PF07295.6 gi|345004516|ref|YP_004807369.1| - 0.11 12.2 0.7 0.13 12.0 0.5 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1451) Zn_Tnp_IS1595 PF12760.2 gi|345004516|ref|YP_004807369.1| - 0.25 11.2 1.6 5 7.0 0.0 2.1 1 1 1 2 2 2 0 Transposase zinc-ribbon domain Gin PF10764.4 gi|345004516|ref|YP_004807369.1| - 0.83 9.4 0.1 0.83 9.4 0.1 2.0 2 0 0 2 2 2 0 Inhibitor of sigma-G Gin NnrU PF07298.6 gi|345004517|ref|YP_004807370.1| - 0.00096 18.5 1.3 0.0012 18.2 0.9 1.1 1 0 0 1 1 1 1 NnrU protein DUF1469 PF07332.6 gi|345004517|ref|YP_004807370.1| - 0.15 11.7 5.6 0.18 11.5 3.9 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1469) UPF0233 PF06781.7 gi|345004517|ref|YP_004807370.1| - 3 7.5 4.8 4.3 7.0 3.4 1.2 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0233) AFOR_C PF01314.13 gi|345004519|ref|YP_004807372.1| - 4.4e-83 279.0 0.1 6.3e-83 278.5 0.1 1.2 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.10 gi|345004519|ref|YP_004807372.1| - 8.2e-64 214.6 0.0 1.3e-63 213.9 0.0 1.3 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain HATPase_c PF02518.21 gi|345004521|ref|YP_004807374.1| - 7.3e-16 57.8 0.1 1.2e-15 57.2 0.1 1.3 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.5 gi|345004521|ref|YP_004807374.1| - 1.8e-06 27.9 0.8 0.031 14.3 0.1 2.8 1 1 1 2 2 2 2 PAS fold HisKA PF00512.20 gi|345004521|ref|YP_004807374.1| - 3.1e-06 27.0 0.3 9.5e-06 25.5 0.2 1.9 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain HATPase_c_2 PF13581.1 gi|345004521|ref|YP_004807374.1| - 7.2e-06 25.8 0.1 1.4e-05 24.8 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS PF00989.19 gi|345004521|ref|YP_004807374.1| - 2.5e-05 24.0 1.8 0.0066 16.2 0.1 3.4 3 1 0 3 3 3 1 PAS fold PAS_9 PF13426.1 gi|345004521|ref|YP_004807374.1| - 9.2e-05 22.7 0.5 0.03 14.7 0.1 3.6 3 1 0 3 3 3 1 PAS domain SPOB_a PF14689.1 gi|345004521|ref|YP_004807374.1| - 0.094 12.2 0.0 0.18 11.4 0.0 1.4 1 0 0 1 1 1 0 Sensor_kinase_SpoOB-type, alpha-helical domain HATPase_c_3 PF13589.1 gi|345004521|ref|YP_004807374.1| - 0.2 11.3 0.0 0.34 10.5 0.0 1.3 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CBS PF00571.23 gi|345004522|ref|YP_004807375.1| - 1.3e-31 108.0 6.3 1.5e-15 56.6 0.2 2.1 2 0 0 2 2 2 2 CBS domain DEK_C PF08766.6 gi|345004522|ref|YP_004807375.1| - 0.048 13.4 0.3 0.13 12.0 0.1 1.8 2 0 0 2 2 2 0 DEK C terminal domain HTH_24 PF13412.1 gi|345004525|ref|YP_004807378.1| - 7.6e-08 31.6 0.0 1.1e-07 31.1 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.2 gi|345004525|ref|YP_004807378.1| - 8.9e-08 31.8 0.4 1.4e-07 31.2 0.3 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.7 gi|345004525|ref|YP_004807378.1| - 3.3e-06 26.6 0.0 5.1e-06 26.0 0.0 1.2 1 0 0 1 1 1 1 HTH domain MarR_2 PF12802.2 gi|345004525|ref|YP_004807378.1| - 9.4e-06 25.2 0.2 1.4e-05 24.6 0.2 1.3 1 0 0 1 1 1 1 MarR family HTH_AsnC-type PF13404.1 gi|345004525|ref|YP_004807378.1| - 3.6e-05 23.2 0.1 0.00028 20.3 0.1 2.3 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain HTH_IclR PF09339.5 gi|345004525|ref|YP_004807378.1| - 0.00034 20.1 0.3 0.00057 19.4 0.2 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR PF01047.17 gi|345004525|ref|YP_004807378.1| - 0.00038 20.0 0.0 0.00054 19.6 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_29 PF13551.1 gi|345004525|ref|YP_004807378.1| - 0.00075 19.6 0.1 0.00095 19.2 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn helix HTH_27 PF13463.1 gi|345004525|ref|YP_004807378.1| - 0.0014 18.8 0.0 0.0024 18.1 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain Rrf2 PF02082.15 gi|345004525|ref|YP_004807378.1| - 0.0021 18.1 0.0 0.0036 17.3 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator HTH_23 PF13384.1 gi|345004525|ref|YP_004807378.1| - 0.0034 16.9 0.0 0.0076 15.8 0.0 1.5 1 0 0 1 1 1 1 Homeodomain-like domain TrmB PF01978.14 gi|345004525|ref|YP_004807378.1| - 0.004 16.8 0.0 0.006 16.2 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_28 PF13518.1 gi|345004525|ref|YP_004807378.1| - 0.0043 17.0 0.0 0.0069 16.3 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_7 PF02796.10 gi|345004525|ref|YP_004807378.1| - 0.013 15.3 0.0 0.025 14.4 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase HTH_5 PF01022.15 gi|345004525|ref|YP_004807378.1| - 0.047 13.3 0.0 0.065 12.9 0.0 1.2 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family GntR PF00392.16 gi|345004525|ref|YP_004807378.1| - 0.07 12.5 0.3 0.9 9.0 0.1 2.1 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family TetR_N PF00440.18 gi|345004525|ref|YP_004807378.1| - 0.096 12.3 0.1 0.18 11.4 0.1 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, tetR family HTH_38 PF13936.1 gi|345004525|ref|YP_004807378.1| - 0.1 12.1 0.0 0.17 11.4 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HupE_UreJ_2 PF13795.1 gi|345004526|ref|YP_004807379.1| - 0.033 13.6 0.5 0.034 13.6 0.3 1.2 1 0 0 1 1 1 0 HupE / UreJ protein DUF4149 PF13664.1 gi|345004526|ref|YP_004807379.1| - 0.06 13.4 2.2 3.9 7.5 0.1 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF4149) EmrE PF13536.1 gi|345004526|ref|YP_004807379.1| - 0.065 13.4 1.6 0.088 13.0 0.9 1.5 1 1 0 1 1 1 0 Multidrug resistance efflux transporter Sulfate_tra_GLY PF13792.1 gi|345004526|ref|YP_004807379.1| - 0.81 9.4 4.2 0.17 11.5 0.8 1.4 2 0 0 2 2 2 0 Sulfate transporter N-terminal domain with GLY motif DUF4131 PF13567.1 gi|345004526|ref|YP_004807379.1| - 1.7 8.0 6.2 0.29 10.5 1.3 1.7 1 1 1 2 2 2 0 Domain of unknown function (DUF4131) DUF423 PF04241.10 gi|345004526|ref|YP_004807379.1| - 2 8.3 6.1 0.62 10.0 1.4 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF423) Peptidase_S9 PF00326.16 gi|345004527|ref|YP_004807380.1| - 5.4e-58 195.7 0.0 1.2e-57 194.5 0.0 1.6 2 0 0 2 2 2 1 Prolyl oligopeptidase family Peptidase_S9_N PF02897.10 gi|345004527|ref|YP_004807380.1| - 4.4e-50 170.4 0.0 6.8e-50 169.8 0.0 1.2 1 0 0 1 1 1 1 Prolyl oligopeptidase, N-terminal beta-propeller domain PD40 PF07676.7 gi|345004527|ref|YP_004807380.1| - 0.096 12.3 0.0 0.24 11.1 0.0 1.7 1 0 0 1 1 1 0 WD40-like Beta Propeller Repeat p450 PF00067.17 gi|345004528|ref|YP_004807381.1| - 1.4e-92 310.6 0.0 1.6e-92 310.4 0.0 1.0 1 0 0 1 1 1 1 Cytochrome P450 Abhydrolase_5 PF12695.2 gi|345004529|ref|YP_004807382.1| - 7.6e-18 64.6 0.0 1.1e-17 64.1 0.0 1.2 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_6 PF12697.2 gi|345004529|ref|YP_004807382.1| - 2.1e-07 31.0 0.4 9.5e-06 25.6 0.3 2.3 1 1 0 1 1 1 1 Alpha/beta hydrolase family Lipase_3 PF01764.20 gi|345004529|ref|YP_004807382.1| - 0.14 11.7 0.3 0.27 10.8 0.2 1.5 1 1 0 1 1 1 0 Lipase (class 3) TspO_MBR PF03073.10 gi|345004531|ref|YP_004807384.1| - 1.6e-49 167.2 22.1 1.8e-49 167.0 15.3 1.0 1 0 0 1 1 1 1 TspO/MBR family 5TM-5TMR_LYT PF07694.7 gi|345004531|ref|YP_004807384.1| - 0.31 10.3 5.2 0.58 9.4 3.6 1.6 1 1 0 1 1 1 0 5TMR of 5TMR-LYT EamA PF00892.15 gi|345004531|ref|YP_004807384.1| - 1.5 8.8 15.0 0.15 12.1 6.4 2.1 2 1 1 3 3 3 0 EamA-like transporter family TrbC PF04956.8 gi|345004531|ref|YP_004807384.1| - 2.4 8.2 10.8 2.8 7.9 0.6 2.6 2 1 0 2 2 2 0 TrbC/VIRB2 family DUF3810 PF12725.2 gi|345004531|ref|YP_004807384.1| - 4.2 6.1 5.0 4.8 5.9 3.5 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3810) DPM3 PF08285.6 gi|345004531|ref|YP_004807384.1| - 10 6.0 7.9 1.4 8.8 1.8 2.1 1 1 1 2 2 2 0 Dolichol-phosphate mannosyltransferase subunit 3 (DPM3) DUF2232 PF09991.4 gi|345004532|ref|YP_004807385.1| - 0.082 11.8 20.3 0.015 14.3 10.5 1.8 2 0 0 2 2 2 0 Predicted membrane protein (DUF2232) PT-VENN PF04829.8 gi|345004532|ref|YP_004807385.1| - 0.28 10.7 3.2 0.8 9.3 1.2 2.1 2 0 0 2 2 2 0 Pre-toxin domain with VENN motif DUF4349 PF14257.1 gi|345004532|ref|YP_004807385.1| - 3 7.0 0.0 3 7.0 0.0 2.9 2 1 1 3 3 3 0 Domain of unknown function (DUF4349) DUF4013 PF13197.1 gi|345004532|ref|YP_004807385.1| - 9.6 5.5 24.5 1.4 8.2 11.9 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF4013) Aldo_ket_red PF00248.16 gi|345004533|ref|YP_004807386.1| - 1e-56 191.8 0.0 1.2e-56 191.6 0.0 1.1 1 0 0 1 1 1 1 Aldo/keto reductase family Amidase PF01425.16 gi|345004534|ref|YP_004807387.1| - 2.7e-138 461.5 1.7 3.2e-138 461.3 1.1 1.0 1 0 0 1 1 1 1 Amidase Glu-tRNAGln PF02686.10 gi|345004535|ref|YP_004807388.1| - 1.3e-15 56.9 2.9 2e-15 56.3 2.0 1.3 1 0 0 1 1 1 1 Glu-tRNAGln amidotransferase C subunit Peptidase_C65 PF10275.4 gi|345004535|ref|YP_004807388.1| - 0.085 12.1 0.1 0.093 12.0 0.1 1.1 1 0 0 1 1 1 0 Peptidase C65 Otubain DUF2407_C PF13373.1 gi|345004535|ref|YP_004807388.1| - 0.15 12.0 0.3 0.19 11.6 0.2 1.1 1 0 0 1 1 1 0 DUF2407 C-terminal domain MFS_1 PF07690.11 gi|345004536|ref|YP_004807389.1| - 6.8e-19 67.7 73.0 2.9e-18 65.7 35.1 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.2 gi|345004536|ref|YP_004807389.1| - 0.027 14.2 2.0 0.21 11.4 0.1 2.8 2 0 0 2 2 2 0 MFS_1 like family Acyl-CoA_dh_1 PF00441.19 gi|345004537|ref|YP_004807390.1| - 9.3e-47 158.8 0.5 1.3e-46 158.4 0.3 1.2 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.11 gi|345004537|ref|YP_004807390.1| - 1.3e-35 122.4 1.8 1.4e-35 122.2 0.2 1.9 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_M PF02770.14 gi|345004537|ref|YP_004807390.1| - 6.8e-18 63.9 0.2 1.4e-17 62.9 0.1 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.6 gi|345004537|ref|YP_004807390.1| - 6.9e-16 58.7 0.7 1.2e-15 57.8 0.5 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain TFIIB PF00382.14 gi|345004538|ref|YP_004807391.1| - 1.3e-42 143.4 0.5 1.7e-20 72.6 0.0 2.3 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.7 gi|345004538|ref|YP_004807391.1| - 1.2e-16 59.7 1.9 3.4e-16 58.2 1.4 1.8 2 0 0 2 2 2 1 TFIIB zinc-binding Sigma70_r4 PF04545.11 gi|345004538|ref|YP_004807391.1| - 0.0083 15.4 4.5 0.011 14.9 0.0 3.3 4 0 0 4 4 4 1 Sigma-70, region 4 HTH_24 PF13412.1 gi|345004538|ref|YP_004807391.1| - 0.062 12.7 0.1 0.12 11.8 0.1 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Rubredoxin PF00301.15 gi|345004538|ref|YP_004807391.1| - 0.1 12.5 0.4 3.5 7.5 0.1 2.5 2 0 0 2 2 2 0 Rubredoxin OrfB_Zn_ribbon PF07282.6 gi|345004538|ref|YP_004807391.1| - 0.11 12.2 0.9 0.21 11.2 0.6 1.5 1 0 0 1 1 1 0 Putative transposase DNA-binding domain RRN7 PF11781.3 gi|345004538|ref|YP_004807391.1| - 0.15 11.6 0.7 0.26 10.8 0.5 1.4 1 0 0 1 1 1 0 RNA polymerase I-specific transcription initiation factor Rrn7 TrmB PF01978.14 gi|345004538|ref|YP_004807391.1| - 0.3 10.8 1.7 0.52 10.0 0.2 2.1 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB A2L_zn_ribbon PF08792.5 gi|345004538|ref|YP_004807391.1| - 0.62 9.5 2.7 2.3 7.7 1.8 1.9 1 1 0 1 1 1 0 A2L zinc ribbon domain MCC-bdg_PDZ PF10506.4 gi|345004539|ref|YP_004807392.1| - 0.089 12.6 1.4 0.37 10.6 0.0 2.7 4 0 0 4 4 4 0 PDZ domain of MCC-2 bdg protein for Usher syndrome DUF4164 PF13747.1 gi|345004539|ref|YP_004807392.1| - 2.3 8.4 11.4 0.11 12.6 3.3 2.3 3 1 0 3 3 3 0 Domain of unknown function (DUF4164) EthD PF07110.6 gi|345004540|ref|YP_004807393.1| - 2.7e-16 60.2 4.6 9.2e-16 58.5 3.2 1.8 1 1 0 1 1 1 1 EthD domain DUF4286 PF14114.1 gi|345004540|ref|YP_004807393.1| - 0.0075 16.5 0.0 0.0092 16.2 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4286) MmlI PF09448.5 gi|345004540|ref|YP_004807393.1| - 0.11 12.2 0.1 0.23 11.2 0.1 1.6 1 1 0 1 1 1 0 Methylmuconolactone methyl-isomerase CoA_transf_3 PF02515.12 gi|345004542|ref|YP_004807395.1| - 1.3e-70 236.5 0.3 1.7e-70 236.1 0.2 1.2 1 0 0 1 1 1 1 CoA-transferase family III TPP_enzyme_N PF02776.13 gi|345004543|ref|YP_004807396.1| - 3.1e-44 150.5 3.5 3.9e-40 137.1 0.1 2.5 2 0 0 2 2 2 2 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.16 gi|345004543|ref|YP_004807396.1| - 3.1e-37 127.5 0.2 1e-36 125.8 0.1 1.9 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_M PF00205.17 gi|345004543|ref|YP_004807396.1| - 2.7e-35 121.1 0.6 7.4e-35 119.6 0.2 1.9 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, central domain Chordopox_G2 PF05796.7 gi|345004543|ref|YP_004807396.1| - 0.1 11.6 0.0 0.16 11.0 0.0 1.2 1 0 0 1 1 1 0 Chordopoxvirus protein G2 Rhodanese PF00581.15 gi|345004544|ref|YP_004807397.1| - 2.9e-19 69.4 0.0 3.4e-19 69.2 0.0 1.0 1 0 0 1 1 1 1 Rhodanese-like domain Peptidase_S8 PF00082.17 gi|345004545|ref|YP_004807398.1| - 1.9e-40 138.7 0.4 2.7e-40 138.3 0.3 1.2 1 0 0 1 1 1 1 Subtilase family DUF4229 PF14012.1 gi|345004546|ref|YP_004807399.1| - 0.038 13.8 2.7 0.08 12.8 1.9 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF4229) ABC_tran PF00005.22 gi|345004548|ref|YP_004807401.1| - 2.3e-31 108.9 0.0 3.3e-31 108.4 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|345004548|ref|YP_004807401.1| - 1.1e-20 73.7 0.8 1.9e-20 72.9 0.5 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_22 PF13401.1 gi|345004548|ref|YP_004807401.1| - 3.7e-06 27.1 0.1 0.0001 22.4 0.2 2.4 2 1 0 2 2 2 1 AAA domain AAA_21 PF13304.1 gi|345004548|ref|YP_004807401.1| - 4.2e-06 26.9 0.0 0.00063 19.7 0.0 2.1 2 0 0 2 2 2 1 AAA domain SMC_N PF02463.14 gi|345004548|ref|YP_004807401.1| - 0.00076 18.7 0.0 0.0012 18.1 0.0 1.2 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.1 gi|345004548|ref|YP_004807401.1| - 0.00092 19.2 0.3 0.002 18.1 0.2 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_25 PF13481.1 gi|345004548|ref|YP_004807401.1| - 0.0023 17.3 0.1 0.024 14.0 0.1 2.5 2 1 0 2 2 2 1 AAA domain AAA_29 PF13555.1 gi|345004548|ref|YP_004807401.1| - 0.0056 16.1 0.0 0.0097 15.4 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA PF00004.24 gi|345004548|ref|YP_004807401.1| - 0.0061 16.7 0.0 0.12 12.5 0.0 2.2 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) NB-ARC PF00931.17 gi|345004548|ref|YP_004807401.1| - 0.062 12.1 0.4 0.12 11.2 0.0 1.6 2 0 0 2 2 2 0 NB-ARC domain AAA_33 PF13671.1 gi|345004548|ref|YP_004807401.1| - 0.067 13.0 0.1 0.14 12.0 0.1 1.6 1 1 0 1 1 1 0 AAA domain Sigma54_activat PF00158.21 gi|345004548|ref|YP_004807401.1| - 0.098 12.1 0.0 3.8 6.9 0.0 2.2 2 0 0 2 2 2 0 Sigma-54 interaction domain AIG1 PF04548.11 gi|345004548|ref|YP_004807401.1| - 0.13 11.3 0.0 0.19 10.8 0.0 1.3 1 0 0 1 1 1 0 AIG1 family MobB PF03205.9 gi|345004548|ref|YP_004807401.1| - 0.14 11.8 0.1 0.27 10.9 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B ABC_tran PF00005.22 gi|345004549|ref|YP_004807402.1| - 2.7e-28 98.9 0.0 3.6e-28 98.5 0.0 1.1 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|345004549|ref|YP_004807402.1| - 9.3e-24 83.5 1.1 1.6e-23 82.8 0.3 1.8 2 0 0 2 2 2 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|345004549|ref|YP_004807402.1| - 2.9e-08 34.0 0.1 4.4e-07 30.1 0.0 2.0 1 1 1 2 2 2 1 AAA domain AAA_25 PF13481.1 gi|345004549|ref|YP_004807402.1| - 0.00097 18.5 0.2 0.059 12.7 0.2 2.5 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|345004549|ref|YP_004807402.1| - 0.019 14.4 0.5 0.033 13.7 0.3 1.3 1 0 0 1 1 1 0 P-loop containing region of AAA domain DUF2075 PF09848.4 gi|345004549|ref|YP_004807402.1| - 0.042 12.8 0.0 0.059 12.3 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) ATP-synt_ab PF00006.20 gi|345004549|ref|YP_004807402.1| - 0.073 12.5 0.0 0.12 11.8 0.0 1.3 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain SMC_N PF02463.14 gi|345004549|ref|YP_004807402.1| - 0.074 12.2 0.1 0.2 10.8 0.1 1.6 1 1 0 1 1 1 0 RecF/RecN/SMC N terminal domain AAA_15 PF13175.1 gi|345004549|ref|YP_004807402.1| - 0.11 11.5 0.1 0.32 9.9 0.0 1.7 2 0 0 2 2 2 0 AAA ATPase domain AAA_10 PF12846.2 gi|345004549|ref|YP_004807402.1| - 0.15 11.4 0.0 0.58 9.5 0.0 1.9 2 0 0 2 2 2 0 AAA-like domain AAA_22 PF13401.1 gi|345004549|ref|YP_004807402.1| - 0.26 11.4 1.7 6.5 6.9 1.2 2.2 1 1 0 1 1 1 0 AAA domain BPD_transp_1 PF00528.17 gi|345004550|ref|YP_004807403.1| - 5e-29 101.1 6.6 5e-29 101.1 4.6 1.7 3 0 0 3 3 3 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.2 gi|345004550|ref|YP_004807403.1| - 5.6e-13 48.0 2.6 6e-11 41.5 0.0 3.4 3 0 0 3 3 3 2 N-terminal TM domain of oligopeptide transport permease C BPD_transp_1 PF00528.17 gi|345004551|ref|YP_004807404.1| - 5.4e-39 133.6 13.2 5.4e-39 133.6 9.1 1.7 3 0 0 3 3 3 1 Binding-protein-dependent transport system inner membrane component SBP_bac_5 PF00496.17 gi|345004552|ref|YP_004807405.1| - 1.5e-71 241.1 1.1 2e-71 240.8 0.8 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle DUF4621 PF15414.1 gi|345004552|ref|YP_004807405.1| - 0.1 11.2 0.0 0.17 10.5 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF4621) Polyketide_cyc2 PF10604.4 gi|345004553|ref|YP_004807406.1| - 2.1e-09 37.6 3.9 2.8e-09 37.2 2.7 1.1 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport Polyketide_cyc PF03364.15 gi|345004553|ref|YP_004807406.1| - 4e-08 33.3 2.0 7e-08 32.5 1.4 1.4 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport AHSA1 PF08327.6 gi|345004553|ref|YP_004807406.1| - 0.0039 17.2 2.0 0.0063 16.6 1.3 1.5 1 1 0 1 1 1 1 Activator of Hsp90 ATPase homolog 1-like protein TrkA_N PF02254.13 gi|345004554|ref|YP_004807407.1| - 2.8e-53 178.8 6.1 3.2e-28 98.0 1.0 2.5 2 0 0 2 2 2 2 TrkA-N domain TrkA_C PF02080.16 gi|345004554|ref|YP_004807407.1| - 1.2e-27 95.3 4.5 7.7e-14 51.0 0.0 3.1 3 0 0 3 3 3 2 TrkA-C domain Shikimate_DH PF01488.15 gi|345004554|ref|YP_004807407.1| - 3.4e-12 46.6 2.1 1.1e-05 25.5 0.3 2.4 2 0 0 2 2 2 2 Shikimate / quinate 5-dehydrogenase NAD_binding_7 PF13241.1 gi|345004554|ref|YP_004807407.1| - 7.5e-10 38.9 2.7 0.00018 21.7 0.4 2.4 2 0 0 2 2 2 2 Putative NAD(P)-binding FAD_binding_3 PF01494.14 gi|345004554|ref|YP_004807407.1| - 6.8e-08 31.9 0.3 0.00062 18.9 0.0 2.4 2 0 0 2 2 2 2 FAD binding domain Saccharop_dh PF03435.13 gi|345004554|ref|YP_004807407.1| - 2.5e-07 30.0 2.3 0.00032 19.8 0.3 2.2 2 0 0 2 2 2 2 Saccharopine dehydrogenase F420_oxidored PF03807.12 gi|345004554|ref|YP_004807407.1| - 3.2e-07 30.6 5.9 2.9e-05 24.4 0.3 3.1 3 1 0 3 3 3 2 NADP oxidoreductase coenzyme F420-dependent Pyr_redox PF00070.22 gi|345004554|ref|YP_004807407.1| - 0.00011 22.5 0.8 0.059 13.7 0.1 2.8 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase UDPG_MGDP_dh_N PF03721.9 gi|345004554|ref|YP_004807407.1| - 0.00027 20.3 0.2 0.0012 18.2 0.2 2.2 2 1 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NAD_Gly3P_dh_N PF01210.18 gi|345004554|ref|YP_004807407.1| - 0.00038 20.2 0.1 0.019 14.7 0.0 2.5 2 0 0 2 2 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ApbA PF02558.11 gi|345004554|ref|YP_004807407.1| - 0.0007 19.0 0.3 0.0077 15.6 0.0 2.3 2 0 0 2 2 2 1 Ketopantoate reductase PanE/ApbA Pyr_redox_2 PF07992.9 gi|345004554|ref|YP_004807407.1| - 0.0007 19.5 0.3 0.34 10.7 0.1 2.5 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.13 gi|345004554|ref|YP_004807407.1| - 0.001 18.7 1.3 0.084 12.5 0.3 2.4 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain XdhC_C PF13478.1 gi|345004554|ref|YP_004807407.1| - 0.0015 18.8 1.0 0.32 11.3 0.0 2.5 2 0 0 2 2 2 1 XdhC Rossmann domain Oxidored_nitro PF00148.14 gi|345004554|ref|YP_004807407.1| - 0.004 15.8 0.4 0.026 13.1 0.0 2.2 2 1 0 2 2 2 1 Nitrogenase component 1 type Oxidoreductase NAD_binding_8 PF13450.1 gi|345004554|ref|YP_004807407.1| - 0.011 15.7 0.1 6.9 6.7 0.0 3.4 3 0 0 3 3 3 0 NAD(P)-binding Rossmann-like domain DAO PF01266.19 gi|345004554|ref|YP_004807407.1| - 0.012 14.5 3.9 1.5 7.6 0.1 3.0 2 2 0 2 2 2 0 FAD dependent oxidoreductase ThiF PF00899.16 gi|345004554|ref|YP_004807407.1| - 0.066 13.0 4.7 23 4.7 0.1 4.1 3 1 1 4 4 4 0 ThiF family YflT PF11181.3 gi|345004554|ref|YP_004807407.1| - 0.18 11.9 1.9 6 7.0 0.1 3.0 2 1 1 3 3 3 0 Heat induced stress protein YflT TrkH PF02386.11 gi|345004555|ref|YP_004807408.1| - 1.1e-48 165.6 12.5 1.8e-48 164.9 4.3 2.1 2 0 0 2 2 2 2 Cation transport protein Form-deh_trans PF09163.6 gi|345004555|ref|YP_004807408.1| - 0.11 11.9 3.6 0.21 11.1 0.4 3.0 2 0 0 2 2 2 0 Formate dehydrogenase N, transmembrane HxlR PF01638.12 gi|345004556|ref|YP_004807409.1| - 4.4e-27 93.5 0.0 5.5e-27 93.2 0.0 1.1 1 0 0 1 1 1 1 HxlR-like helix-turn-helix PadR PF03551.9 gi|345004556|ref|YP_004807409.1| - 0.0022 17.7 0.0 0.0031 17.2 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family DUF719 PF05334.8 gi|345004556|ref|YP_004807409.1| - 0.039 13.9 0.0 0.052 13.5 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF719) TrmB PF01978.14 gi|345004556|ref|YP_004807409.1| - 0.041 13.5 0.0 0.055 13.1 0.0 1.2 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB DUF4423 PF14394.1 gi|345004556|ref|YP_004807409.1| - 0.042 13.3 0.0 0.049 13.1 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) MarR PF01047.17 gi|345004556|ref|YP_004807409.1| - 0.081 12.6 0.0 0.14 11.9 0.0 1.3 1 0 0 1 1 1 0 MarR family HTH_20 PF12840.2 gi|345004556|ref|YP_004807409.1| - 0.14 11.9 0.0 0.26 11.1 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain DUF3179 PF11376.3 gi|345004557|ref|YP_004807410.1| - 3.3e-91 305.1 0.0 3.8e-91 304.9 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3179) SIS PF01380.17 gi|345004557|ref|YP_004807410.1| - 0.087 12.4 0.0 6.2 6.4 0.0 2.3 2 0 0 2 2 2 0 SIS domain MerT PF02411.10 gi|345004558|ref|YP_004807411.1| - 0.36 10.6 6.2 0.47 10.2 3.7 1.7 1 1 0 1 1 1 0 MerT mercuric transport protein DUF2061 PF09834.4 gi|345004558|ref|YP_004807411.1| - 7.6 6.8 6.7 11 6.2 1.0 2.6 2 0 0 2 2 2 0 Predicted membrane protein (DUF2061) DUF1508 PF07411.7 gi|345004559|ref|YP_004807412.1| - 1.6e-80 264.3 6.2 2.5e-17 62.0 0.0 5.4 5 0 0 5 5 5 5 Domain of unknown function (DUF1508) IncA PF04156.9 gi|345004559|ref|YP_004807412.1| - 0.00018 21.1 0.1 0.00018 21.1 0.1 2.0 2 0 0 2 2 2 1 IncA protein AHSA1 PF08327.6 gi|345004559|ref|YP_004807412.1| - 0.00026 21.0 0.3 0.11 12.6 0.0 3.2 2 1 1 3 3 3 1 Activator of Hsp90 ATPase homolog 1-like protein FUSC PF04632.7 gi|345004559|ref|YP_004807412.1| - 0.0015 17.1 10.8 0.0015 17.1 7.5 1.8 3 0 0 3 3 3 1 Fusaric acid resistance protein family APG6 PF04111.7 gi|345004559|ref|YP_004807412.1| - 0.082 11.9 1.9 0.13 11.2 1.3 1.2 1 0 0 1 1 1 0 Autophagy protein Apg6 Syntaxin-6_N PF09177.6 gi|345004559|ref|YP_004807412.1| - 0.41 11.0 2.4 1.6 9.1 0.8 2.5 2 1 1 3 3 3 0 Syntaxin 6, N-terminal PAS_3 PF08447.6 gi|345004559|ref|YP_004807412.1| - 4 7.6 5.9 27 4.9 0.0 4.3 4 1 0 4 4 4 0 PAS fold DUF4404 PF14357.1 gi|345004559|ref|YP_004807412.1| - 4.4 7.7 8.6 14 6.1 5.9 2.0 1 1 0 1 1 1 0 Domain of unknown function (DUF4404) GARS_A PF01071.14 gi|345004560|ref|YP_004807413.1| - 2e-10 40.5 0.0 4.1e-10 39.5 0.0 1.6 1 1 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ATP-grasp_4 PF13535.1 gi|345004560|ref|YP_004807413.1| - 9.7e-08 31.9 0.0 1.7e-07 31.1 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain GARS_C PF02843.11 gi|345004560|ref|YP_004807413.1| - 2.4e-07 30.8 0.0 6.2e-07 29.5 0.0 1.7 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, C domain ATP-grasp_5 PF13549.1 gi|345004560|ref|YP_004807413.1| - 0.049 12.8 0.0 0.13 11.4 0.0 1.6 2 0 0 2 2 2 0 ATP-grasp domain NHase_alpha PF02979.11 gi|345004561|ref|YP_004807414.1| - 1.5e-78 262.4 0.1 1.9e-78 262.1 0.0 1.0 1 0 0 1 1 1 1 Nitrile hydratase, alpha chain NHase_beta PF02211.10 gi|345004562|ref|YP_004807415.1| - 2.1e-05 24.3 0.1 0.00013 21.7 0.1 1.9 1 1 0 1 1 1 1 Nitrile hydratase beta subunit Ribosomal_L44 PF00935.14 gi|345004563|ref|YP_004807416.1| - 1.4e-24 85.8 5.9 1.7e-24 85.6 4.1 1.1 1 0 0 1 1 1 1 Ribosomal protein L44 DUF2296 PF10058.4 gi|345004563|ref|YP_004807416.1| - 0.038 13.7 1.1 5.1 6.9 0.0 2.2 2 0 0 2 2 2 0 Predicted integral membrane metal-binding protein (DUF2296) Siva PF05458.7 gi|345004563|ref|YP_004807416.1| - 0.051 13.1 0.1 0.06 12.9 0.1 1.2 1 0 0 1 1 1 0 Cd27 binding protein (Siva) F-112 PF09645.5 gi|345004563|ref|YP_004807416.1| - 0.069 13.0 1.5 0.1 12.5 1.0 1.4 1 1 0 1 1 1 0 F-112 protein zinc_ribbon_4 PF13717.1 gi|345004563|ref|YP_004807416.1| - 0.069 12.8 1.3 0.33 10.6 0.0 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|345004563|ref|YP_004807416.1| - 0.075 12.6 1.1 0.37 10.4 0.0 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|345004563|ref|YP_004807416.1| - 0.077 12.2 0.3 1.6 8.0 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Lar_restr_allev PF14354.1 gi|345004563|ref|YP_004807416.1| - 0.094 13.0 0.6 0.22 11.8 0.4 1.6 1 1 0 1 1 1 0 Restriction alleviation protein Lar DZR PF12773.2 gi|345004563|ref|YP_004807416.1| - 0.11 12.3 3.2 0.42 10.4 2.2 1.8 1 1 0 1 1 1 0 Double zinc ribbon Nudix_N_2 PF14803.1 gi|345004563|ref|YP_004807416.1| - 0.17 11.6 2.5 7.9 6.2 0.1 2.6 2 1 0 2 2 2 0 Nudix N-terminal zinc_ribbon_2 PF13240.1 gi|345004563|ref|YP_004807416.1| - 1.3 8.6 3.7 1.1 8.8 0.7 2.0 2 1 0 2 2 2 0 zinc-ribbon domain zf-B_box PF00643.19 gi|345004563|ref|YP_004807416.1| - 8 6.4 9.8 6.3 6.7 0.2 2.2 2 0 0 2 2 2 0 B-box zinc finger Ribosomal_S27e PF01667.12 gi|345004564|ref|YP_004807417.1| - 1e-20 73.0 1.4 1.1e-20 72.9 1.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S27 Zn-ribbon_8 PF09723.5 gi|345004564|ref|YP_004807417.1| - 0.0025 17.7 1.9 0.0034 17.2 1.3 1.1 1 0 0 1 1 1 1 Zinc ribbon domain Zn_Tnp_IS91 PF14319.1 gi|345004564|ref|YP_004807417.1| - 0.0096 15.4 0.4 0.01 15.3 0.3 1.1 1 0 0 1 1 1 1 Transposase zinc-binding domain zf-CHY PF05495.7 gi|345004564|ref|YP_004807417.1| - 0.042 14.0 1.3 0.058 13.5 0.9 1.2 1 0 0 1 1 1 0 CHY zinc finger DUF2318 PF10080.4 gi|345004564|ref|YP_004807417.1| - 0.05 13.3 0.7 0.057 13.1 0.5 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2318) HypA PF01155.14 gi|345004564|ref|YP_004807417.1| - 0.053 13.2 0.7 0.064 12.9 0.5 1.1 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family Sema PF01403.14 gi|345004564|ref|YP_004807417.1| - 0.058 11.9 0.5 0.062 11.8 0.3 1.0 1 0 0 1 1 1 0 Sema domain OrfB_Zn_ribbon PF07282.6 gi|345004564|ref|YP_004807417.1| - 0.076 12.6 0.7 0.085 12.5 0.5 1.2 1 0 0 1 1 1 0 Putative transposase DNA-binding domain IBR PF01485.16 gi|345004564|ref|YP_004807417.1| - 0.12 12.2 1.1 0.17 11.8 0.8 1.2 1 0 0 1 1 1 0 IBR domain A2L_zn_ribbon PF08792.5 gi|345004564|ref|YP_004807417.1| - 0.14 11.6 3.0 0.31 10.5 2.1 1.6 1 1 0 1 1 1 0 A2L zinc ribbon domain zf-ribbon_3 PF13248.1 gi|345004564|ref|YP_004807417.1| - 0.21 10.8 2.0 0.43 9.8 1.4 1.6 1 1 0 1 1 1 0 zinc-ribbon domain zinc_ribbon_6 PF14599.1 gi|345004564|ref|YP_004807417.1| - 0.22 11.3 3.0 0.57 10.0 2.1 1.7 1 1 0 1 1 1 0 Zinc-ribbon C1_1 PF00130.17 gi|345004564|ref|YP_004807417.1| - 0.28 10.9 1.7 0.78 9.5 1.3 1.6 1 1 1 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) GCC2_GCC3 PF07699.8 gi|345004564|ref|YP_004807417.1| - 0.32 10.6 2.4 0.45 10.1 1.6 1.3 1 1 0 1 1 1 0 GCC2 and GCC3 zinc_ribbon_4 PF13717.1 gi|345004564|ref|YP_004807417.1| - 0.33 10.6 4.0 3.6 7.3 0.2 2.2 1 1 1 2 2 2 0 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|345004564|ref|YP_004807417.1| - 0.34 10.5 3.9 3.2 7.4 0.2 2.2 1 1 1 2 2 2 0 zinc-ribbon domain zf-trcl PF13451.1 gi|345004564|ref|YP_004807417.1| - 0.55 9.8 4.6 0.81 9.3 0.5 2.1 1 1 1 2 2 2 0 Probable zinc-binding domain DUF3797 PF12677.2 gi|345004564|ref|YP_004807417.1| - 2.5 7.7 5.3 4.6 6.9 0.4 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF3797) Zn_Tnp_IS1 PF03811.8 gi|345004564|ref|YP_004807417.1| - 3.4 7.2 7.1 1.1 8.8 0.9 2.1 1 1 1 2 2 2 0 InsA N-terminal domain EIF_2_alpha PF07541.7 gi|345004565|ref|YP_004807418.1| - 6.2e-27 93.5 0.1 1.3e-26 92.5 0.0 1.6 1 0 0 1 1 1 1 Eukaryotic translation initiation factor 2 alpha subunit S1 PF00575.18 gi|345004565|ref|YP_004807418.1| - 9.4e-14 51.2 2.9 9.6e-14 51.2 1.0 1.7 2 0 0 2 2 2 1 S1 RNA binding domain PP2 PF14299.1 gi|345004565|ref|YP_004807418.1| - 0.047 13.0 0.3 0.083 12.2 0.2 1.4 1 0 0 1 1 1 0 Phloem protein 2 Nop10p PF04135.7 gi|345004566|ref|YP_004807419.1| - 1.1e-19 69.8 0.2 1.3e-19 69.6 0.1 1.1 1 0 0 1 1 1 1 Nucleolar RNA-binding protein, Nop10p family zf-ribbon_3 PF13248.1 gi|345004566|ref|YP_004807419.1| - 0.024 13.8 0.7 0.043 13.0 0.3 1.6 2 0 0 2 2 2 0 zinc-ribbon domain DNA_ligase_ZBD PF03119.11 gi|345004566|ref|YP_004807419.1| - 0.038 13.6 0.5 0.069 12.8 0.3 1.4 1 0 0 1 1 1 0 NAD-dependent DNA ligase C4 zinc finger domain PAC2 PF09754.4 gi|345004567|ref|YP_004807420.1| - 5.1e-47 160.5 0.1 1.7e-34 119.5 0.0 2.1 2 0 0 2 2 2 2 PAC2 family 5_3_exonuc PF01367.15 gi|345004567|ref|YP_004807420.1| - 0.11 12.7 0.0 0.4 10.9 0.0 2.0 2 0 0 2 2 2 0 5'-3' exonuclease, C-terminal SAM fold CDC45 PF02724.9 gi|345004567|ref|YP_004807420.1| - 3 5.7 5.9 4 5.3 4.1 1.2 1 0 0 1 1 1 0 CDC45-like protein Daxx PF03344.10 gi|345004567|ref|YP_004807420.1| - 3 6.2 14.1 4 5.8 9.8 1.1 1 0 0 1 1 1 0 Daxx Family Nop14 PF04147.7 gi|345004567|ref|YP_004807420.1| - 3.3 5.5 14.2 4.1 5.1 9.8 1.1 1 0 0 1 1 1 0 Nop14-like family SDA1 PF05285.7 gi|345004567|ref|YP_004807420.1| - 5.8 6.0 12.3 8.2 5.5 8.5 1.2 1 0 0 1 1 1 0 SDA1 CobT PF06213.7 gi|345004567|ref|YP_004807420.1| - 7.3 5.6 15.2 13 4.8 10.6 1.3 1 0 0 1 1 1 0 Cobalamin biosynthesis protein CobT Flp_Fap PF04964.9 gi|345004568|ref|YP_004807421.1| - 0.048 13.2 1.8 0.06 12.9 1.2 1.3 1 1 0 1 1 1 0 Flp/Fap pilin component AAA PF00004.24 gi|345004569|ref|YP_004807422.1| - 2.4e-44 150.7 0.1 2.4e-44 150.7 0.0 2.2 3 0 0 3 3 2 1 ATPase family associated with various cellular activities (AAA) AAA_2 PF07724.9 gi|345004569|ref|YP_004807422.1| - 1.1e-08 35.1 0.0 3e-08 33.7 0.0 1.8 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) AAA_5 PF07728.9 gi|345004569|ref|YP_004807422.1| - 4.8e-07 29.5 0.2 5e-06 26.2 0.2 2.7 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_16 PF13191.1 gi|345004569|ref|YP_004807422.1| - 1.2e-06 28.6 4.8 2.5e-05 24.3 0.2 3.6 2 1 0 2 2 2 1 AAA ATPase domain RuvB_N PF05496.7 gi|345004569|ref|YP_004807422.1| - 2.2e-06 26.9 0.0 5.3e-06 25.6 0.0 1.6 2 0 0 2 2 1 1 Holliday junction DNA helicase ruvB N-terminus AAA_17 PF13207.1 gi|345004569|ref|YP_004807422.1| - 2.7e-06 28.2 1.9 5.4e-06 27.2 0.1 2.5 2 2 0 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|345004569|ref|YP_004807422.1| - 1.7e-05 24.9 2.4 0.00051 20.1 0.2 2.9 2 2 0 2 2 2 1 AAA domain AAA_19 PF13245.1 gi|345004569|ref|YP_004807422.1| - 9.7e-05 22.0 0.1 0.00026 20.6 0.1 1.7 1 0 0 1 1 1 1 Part of AAA domain AAA_14 PF13173.1 gi|345004569|ref|YP_004807422.1| - 0.00067 19.5 0.1 0.0028 17.5 0.0 2.0 2 0 0 2 2 2 1 AAA domain TIP49 PF06068.8 gi|345004569|ref|YP_004807422.1| - 0.00068 18.4 0.2 0.0018 17.0 0.0 1.8 2 0 0 2 2 2 1 TIP49 C-terminus AAA_18 PF13238.1 gi|345004569|ref|YP_004807422.1| - 0.00074 19.8 3.7 0.0021 18.3 0.1 2.9 2 1 0 2 2 2 1 AAA domain AAA_33 PF13671.1 gi|345004569|ref|YP_004807422.1| - 0.0012 18.7 0.2 0.0047 16.8 0.0 2.2 2 1 0 2 2 2 1 AAA domain IstB_IS21 PF01695.12 gi|345004569|ref|YP_004807422.1| - 0.0017 17.7 0.2 0.0041 16.5 0.0 1.7 2 0 0 2 2 1 1 IstB-like ATP binding protein Mg_chelatase PF01078.16 gi|345004569|ref|YP_004807422.1| - 0.0028 16.8 0.2 0.026 13.7 0.1 2.3 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI ATG16 PF08614.6 gi|345004569|ref|YP_004807422.1| - 0.003 17.4 8.3 0.003 17.4 5.7 2.5 2 0 0 2 2 2 1 Autophagy protein 16 (ATG16) AAA_28 PF13521.1 gi|345004569|ref|YP_004807422.1| - 0.0035 17.3 1.2 0.011 15.6 0.0 2.5 3 0 0 3 3 2 1 AAA domain GrpE PF01025.14 gi|345004569|ref|YP_004807422.1| - 0.0036 16.8 7.0 0.0036 16.8 4.8 1.7 2 0 0 2 2 1 1 GrpE Sigma54_activat PF00158.21 gi|345004569|ref|YP_004807422.1| - 0.004 16.6 0.2 0.12 11.8 0.1 2.6 1 1 0 1 1 1 1 Sigma-54 interaction domain DUF815 PF05673.8 gi|345004569|ref|YP_004807422.1| - 0.0046 15.9 0.0 0.0099 14.8 0.0 1.7 1 0 0 1 1 1 1 Protein of unknown function (DUF815) NACHT PF05729.7 gi|345004569|ref|YP_004807422.1| - 0.0058 16.3 0.2 0.26 10.9 0.0 2.6 1 1 1 2 2 2 1 NACHT domain AAA_30 PF13604.1 gi|345004569|ref|YP_004807422.1| - 0.0099 15.4 0.0 0.029 13.9 0.0 2.0 1 0 0 1 1 1 1 AAA domain KaiC PF06745.8 gi|345004569|ref|YP_004807422.1| - 0.012 14.7 6.3 0.18 10.8 0.0 3.6 3 1 1 4 4 3 0 KaiC RNA_helicase PF00910.17 gi|345004569|ref|YP_004807422.1| - 0.013 15.6 0.0 0.032 14.3 0.0 1.7 1 0 0 1 1 1 0 RNA helicase Zeta_toxin PF06414.7 gi|345004569|ref|YP_004807422.1| - 0.015 14.3 0.0 0.042 12.9 0.0 1.8 1 0 0 1 1 1 0 Zeta toxin PhoH PF02562.11 gi|345004569|ref|YP_004807422.1| - 0.018 14.3 0.0 0.041 13.1 0.0 1.6 1 0 0 1 1 1 0 PhoH-like protein DUF2075 PF09848.4 gi|345004569|ref|YP_004807422.1| - 0.024 13.6 0.7 0.11 11.4 0.0 2.2 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) AAA_3 PF07726.6 gi|345004569|ref|YP_004807422.1| - 0.026 14.1 0.1 0.09 12.3 0.0 2.1 2 0 0 2 2 1 0 ATPase family associated with various cellular activities (AAA) ResIII PF04851.10 gi|345004569|ref|YP_004807422.1| - 0.029 14.1 2.1 0.73 9.6 0.0 2.4 1 1 1 2 2 2 0 Type III restriction enzyme, res subunit AAA_11 PF13086.1 gi|345004569|ref|YP_004807422.1| - 0.03 13.8 1.6 0.29 10.6 0.0 2.4 2 1 0 2 2 2 0 AAA domain AAA_25 PF13481.1 gi|345004569|ref|YP_004807422.1| - 0.039 13.3 7.7 0.19 11.0 0.2 3.2 2 2 1 3 3 3 0 AAA domain NB-ARC PF00931.17 gi|345004569|ref|YP_004807422.1| - 0.06 12.2 0.0 0.56 9.0 0.0 2.4 2 0 0 2 2 2 0 NB-ARC domain Sigma54_activ_2 PF14532.1 gi|345004569|ref|YP_004807422.1| - 0.07 13.1 0.1 0.32 11.0 0.0 2.3 2 1 0 2 2 1 0 Sigma-54 interaction domain bZIP_1 PF00170.16 gi|345004569|ref|YP_004807422.1| - 0.077 12.9 9.5 0.24 11.3 1.4 2.5 1 1 1 2 2 2 0 bZIP transcription factor NTPase_1 PF03266.10 gi|345004569|ref|YP_004807422.1| - 0.079 12.6 3.9 0.74 9.5 0.0 3.1 2 1 1 3 3 3 0 NTPase Herpes_U30 PF04523.8 gi|345004569|ref|YP_004807422.1| - 0.084 10.3 0.5 0.13 9.7 0.3 1.2 1 0 0 1 1 1 0 Herpes virus tegument protein U30 Torsin PF06309.6 gi|345004569|ref|YP_004807422.1| - 0.087 12.7 0.0 0.18 11.6 0.0 1.5 1 0 0 1 1 1 0 Torsin APG6 PF04111.7 gi|345004569|ref|YP_004807422.1| - 0.12 11.4 7.8 0.21 10.6 5.4 1.4 1 0 0 1 1 1 0 Autophagy protein Apg6 TMF_DNA_bd PF12329.3 gi|345004569|ref|YP_004807422.1| - 0.18 11.6 9.9 0.47 10.3 6.9 1.6 1 0 0 1 1 1 0 TATA element modulatory factor 1 DNA binding DUF3373 PF11853.3 gi|345004569|ref|YP_004807422.1| - 0.29 9.6 2.3 0.46 8.9 1.6 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3373) DUF2051 PF09738.4 gi|345004569|ref|YP_004807422.1| - 0.3 10.3 12.3 0.1 11.9 6.4 1.7 2 0 0 2 2 1 0 Double stranded RNA binding protein (DUF2051) ABC_tran PF00005.22 gi|345004569|ref|YP_004807422.1| - 0.43 10.8 5.9 0.78 10.0 0.0 2.8 2 1 0 2 2 2 0 ABC transporter IncA PF04156.9 gi|345004569|ref|YP_004807422.1| - 0.57 9.7 12.4 0.98 8.9 7.5 2.0 1 1 1 2 2 2 0 IncA protein DivIVA PF05103.8 gi|345004569|ref|YP_004807422.1| - 0.74 9.8 10.2 2 8.4 6.1 2.4 1 1 1 2 2 2 0 DivIVA protein DUF904 PF06005.7 gi|345004569|ref|YP_004807422.1| - 1.5 9.1 11.5 6.4 7.1 7.7 2.2 2 1 0 2 2 1 0 Protein of unknown function (DUF904) AAA_23 PF13476.1 gi|345004569|ref|YP_004807422.1| - 2.6 8.3 8.1 43 4.3 0.0 2.6 2 0 0 2 2 2 0 AAA domain ERM PF00769.14 gi|345004569|ref|YP_004807422.1| - 2.8 7.4 16.4 0.24 10.8 7.7 1.8 3 0 0 3 3 1 0 Ezrin/radixin/moesin family Metallophos_2 PF12850.2 gi|345004571|ref|YP_004807424.1| - 3.5e-14 52.9 0.2 8.1e-14 51.7 0.0 1.7 2 0 0 2 2 2 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|345004571|ref|YP_004807424.1| - 4.3e-12 45.8 0.1 6.1e-12 45.3 0.1 1.3 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase DUF3018 PF11455.3 gi|345004571|ref|YP_004807424.1| - 0.014 15.3 1.1 0.54 10.2 0.1 3.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3018) Lip_A_acyltrans PF03279.8 gi|345004571|ref|YP_004807424.1| - 0.15 10.9 0.0 0.24 10.2 0.0 1.2 1 0 0 1 1 1 0 Bacterial lipid A biosynthesis acyltransferase AAA_23 PF13476.1 gi|345004572|ref|YP_004807425.1| - 2e-21 77.2 11.5 2e-21 77.2 8.0 6.3 1 1 0 3 3 1 1 AAA domain AAA_21 PF13304.1 gi|345004572|ref|YP_004807425.1| - 3.7e-12 46.8 0.1 6.9e-07 29.5 0.0 2.4 2 0 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|345004572|ref|YP_004807425.1| - 4.8e-10 39.0 41.6 1.3e-09 37.6 28.8 1.7 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_13 PF13166.1 gi|345004572|ref|YP_004807425.1| - 7.7e-09 34.5 60.5 0.14 10.5 18.0 5.3 2 1 3 5 5 5 5 AAA domain AAA_15 PF13175.1 gi|345004572|ref|YP_004807425.1| - 3.9e-06 26.1 0.0 0.0022 17.1 0.0 2.9 3 0 0 3 3 3 2 AAA ATPase domain AAA_29 PF13555.1 gi|345004572|ref|YP_004807425.1| - 8.6e-06 25.1 0.0 2.4e-05 23.7 0.0 1.7 1 0 0 1 1 1 1 P-loop containing region of AAA domain DUF3584 PF12128.3 gi|345004572|ref|YP_004807425.1| - 1.1e-05 23.1 104.1 1.7e-05 22.4 28.8 3.0 2 1 0 3 3 3 2 Protein of unknown function (DUF3584) IncA PF04156.9 gi|345004572|ref|YP_004807425.1| - 0.00051 19.7 113.9 2.5 7.6 17.7 5.9 1 1 3 4 4 4 2 IncA protein Fib_alpha PF08702.5 gi|345004572|ref|YP_004807425.1| - 0.031 14.4 36.1 0.62 10.1 1.1 5.4 5 1 0 5 5 5 0 Fibrinogen alpha/beta chain family Reo_sigmaC PF04582.7 gi|345004572|ref|YP_004807425.1| - 0.036 13.2 30.0 0.14 11.3 0.7 4.9 2 2 1 4 4 4 0 Reovirus sigma C capsid protein ABC_tran PF00005.22 gi|345004572|ref|YP_004807425.1| - 0.11 12.8 0.0 0.11 12.8 0.0 4.9 2 1 0 2 2 1 0 ABC transporter GAS PF13851.1 gi|345004572|ref|YP_004807425.1| - 0.14 11.3 83.6 0.078 12.1 12.9 5.3 2 2 4 6 6 6 0 Growth-arrest specific micro-tubule binding CENP-F_leu_zip PF10473.4 gi|345004572|ref|YP_004807425.1| - 0.19 11.5 114.9 0.14 11.9 7.1 7.2 2 2 5 7 7 7 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 NPV_P10 PF05531.7 gi|345004572|ref|YP_004807425.1| - 0.26 11.5 26.1 2.7 8.2 0.8 7.5 4 2 4 9 9 9 0 Nucleopolyhedrovirus P10 protein AAA_27 PF13514.1 gi|345004572|ref|YP_004807425.1| - 0.27 8.8 0.0 0.27 8.8 0.0 4.7 1 1 3 4 4 4 0 AAA domain Snapin_Pallidin PF14712.1 gi|345004572|ref|YP_004807425.1| - 1.1 9.5 36.0 0.062 13.6 1.0 7.1 4 2 4 8 8 8 0 Snapin/Pallidin DUF342 PF03961.8 gi|345004572|ref|YP_004807425.1| - 2.4 6.4 62.5 0.25 9.6 1.7 5.7 1 1 4 6 6 6 0 Protein of unknown function (DUF342) MarR_2 PF12802.2 gi|345004573|ref|YP_004807426.1| - 0.016 14.8 0.6 0.033 13.8 0.1 1.8 2 0 0 2 2 2 0 MarR family DUF2371 PF10177.4 gi|345004574|ref|YP_004807427.1| - 0.15 11.9 0.0 7.8 6.3 0.0 2.2 2 0 0 2 2 2 0 Uncharacterised conserved protein (DUF2371) Nop14 PF04147.7 gi|345004574|ref|YP_004807427.1| - 0.28 9.0 2.2 0.31 8.9 1.5 1.1 1 0 0 1 1 1 0 Nop14-like family DNA_pol_B PF00136.16 gi|345004576|ref|YP_004807429.1| - 3.2e-46 158.0 0.0 1.7e-34 119.4 0.0 3.2 3 0 0 3 3 3 3 DNA polymerase family B DNA_pol_B_exo1 PF03104.14 gi|345004576|ref|YP_004807429.1| - 8.7e-33 113.5 0.0 1.4e-32 112.8 0.0 1.3 1 0 0 1 1 1 1 DNA polymerase family B, exonuclease domain Hint_2 PF13403.1 gi|345004576|ref|YP_004807429.1| - 4e-13 49.5 0.0 1.1e-07 31.9 0.0 3.0 2 1 0 2 2 2 2 Hint domain PT-HINT PF07591.6 gi|345004576|ref|YP_004807429.1| - 5.6e-09 35.9 0.0 0.0054 16.5 0.0 3.1 3 0 0 3 3 3 2 Pretoxin HINT domain Hint PF01079.15 gi|345004576|ref|YP_004807429.1| - 1.8e-08 33.8 0.1 5.3e-06 25.8 0.0 2.3 2 0 0 2 2 2 2 Hint module LAGLIDADG_3 PF14528.1 gi|345004576|ref|YP_004807429.1| - 9.5e-08 32.1 0.1 0.045 13.9 0.0 4.7 4 0 0 4 4 4 2 LAGLIDADG-like domain DNA_pol_B_exo2 PF10108.4 gi|345004576|ref|YP_004807429.1| - 0.089 12.3 0.0 0.18 11.3 0.0 1.4 1 0 0 1 1 1 0 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB Glycos_transf_2 PF00535.21 gi|345004577|ref|YP_004807430.1| - 1.5e-08 34.5 0.0 2.1e-08 34.0 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|345004577|ref|YP_004807430.1| - 0.0018 18.1 0.1 0.0032 17.3 0.1 1.6 1 1 0 1 1 1 1 Glycosyltransferase like family 2 GtrA PF04138.9 gi|345004578|ref|YP_004807431.1| - 5e-18 65.1 6.3 8.1e-18 64.4 4.4 1.3 1 1 0 1 1 1 1 GtrA-like protein Rieske PF00355.21 gi|345004579|ref|YP_004807432.1| - 3e-06 26.7 0.0 3.8e-06 26.3 0.0 1.2 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain Aminotran_4 PF01063.14 gi|345004581|ref|YP_004807434.1| - 5.3e-46 156.9 0.0 7.6e-46 156.4 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class IV GATase PF00117.23 gi|345004582|ref|YP_004807435.1| - 1.1e-48 165.2 0.0 1.3e-48 165.0 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|345004582|ref|YP_004807435.1| - 3.3e-07 29.9 0.2 6.4e-07 29.0 0.1 1.4 1 1 0 1 1 1 1 Peptidase C26 Chorismate_bind PF00425.13 gi|345004583|ref|YP_004807436.1| - 3.8e-98 327.9 0.0 5.3e-98 327.4 0.0 1.2 1 0 0 1 1 1 1 chorismate binding enzyme Anth_synt_I_N PF04715.8 gi|345004583|ref|YP_004807436.1| - 2e-13 50.5 0.0 5.9e-13 49.0 0.0 1.8 2 0 0 2 2 2 1 Anthranilate synthase component I, N terminal region HHH_5 PF14520.1 gi|345004584|ref|YP_004807437.1| - 5.7e-10 39.2 3.7 1e-09 38.3 1.3 2.2 2 0 0 2 2 2 1 Helix-hairpin-helix domain DUF4332 PF14229.1 gi|345004584|ref|YP_004807437.1| - 4.3e-06 26.7 0.1 9.6e-05 22.3 0.1 2.3 1 1 0 1 1 1 1 Domain of unknown function (DUF4332) Cdd1 PF11731.3 gi|345004584|ref|YP_004807437.1| - 6e-06 26.1 0.0 1e-05 25.3 0.0 1.4 1 0 0 1 1 1 1 Pathogenicity locus TfoX_C PF04994.8 gi|345004584|ref|YP_004807437.1| - 0.0043 16.9 0.0 0.0076 16.1 0.0 1.3 1 0 0 1 1 1 1 TfoX C-terminal domain CENP-T PF15511.1 gi|345004584|ref|YP_004807437.1| - 2 7.5 15.0 2.5 7.2 10.4 1.1 1 0 0 1 1 1 0 Centromere kinetochore component CENP-T DUF4407 PF14362.1 gi|345004584|ref|YP_004807437.1| - 2.7 6.8 8.1 3.3 6.5 5.6 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) Shikimate_dh_N PF08501.6 gi|345004585|ref|YP_004807438.1| - 1.4e-25 89.1 0.0 3e-25 88.0 0.0 1.6 1 0 0 1 1 1 1 Shikimate dehydrogenase substrate binding domain Shikimate_DH PF01488.15 gi|345004585|ref|YP_004807438.1| - 5.6e-16 58.8 0.0 7.8e-16 58.4 0.0 1.2 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase Saccharop_dh PF03435.13 gi|345004585|ref|YP_004807438.1| - 1.8e-05 23.9 1.1 2.6e-05 23.3 0.8 1.3 1 0 0 1 1 1 1 Saccharopine dehydrogenase FAD_binding_2 PF00890.19 gi|345004585|ref|YP_004807438.1| - 2.2e-05 23.5 2.6 2.5e-05 23.3 1.8 1.2 1 0 0 1 1 1 1 FAD binding domain F420_oxidored PF03807.12 gi|345004585|ref|YP_004807438.1| - 0.00041 20.7 0.3 0.00076 19.8 0.2 1.5 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent AdoHcyase_NAD PF00670.16 gi|345004585|ref|YP_004807438.1| - 0.00065 19.5 1.2 0.001 18.9 0.8 1.2 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain NAD_binding_7 PF13241.1 gi|345004585|ref|YP_004807438.1| - 0.0014 18.8 0.2 0.0025 18.0 0.1 1.3 1 0 0 1 1 1 1 Putative NAD(P)-binding 2-Hacid_dh_C PF02826.14 gi|345004585|ref|YP_004807438.1| - 0.0014 17.8 0.1 0.0023 17.0 0.1 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IlvN PF07991.7 gi|345004585|ref|YP_004807438.1| - 0.0016 17.8 0.2 0.0028 17.0 0.1 1.4 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain GIDA PF01134.17 gi|345004585|ref|YP_004807438.1| - 0.0017 17.3 2.0 0.0021 16.9 1.4 1.1 1 0 0 1 1 1 1 Glucose inhibited division protein A THF_DHG_CYH_C PF02882.14 gi|345004585|ref|YP_004807438.1| - 0.0027 16.7 0.3 0.0088 15.1 0.2 1.9 1 1 0 1 1 1 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain DAO PF01266.19 gi|345004585|ref|YP_004807438.1| - 0.0045 15.9 0.7 0.0063 15.4 0.5 1.4 1 0 0 1 1 1 1 FAD dependent oxidoreductase NAD_binding_10 PF13460.1 gi|345004585|ref|YP_004807438.1| - 0.006 16.6 2.7 0.006 16.6 1.9 1.9 2 0 0 2 2 2 1 NADH(P)-binding Thi4 PF01946.12 gi|345004585|ref|YP_004807438.1| - 0.0072 15.4 0.2 0.013 14.6 0.1 1.3 1 0 0 1 1 1 1 Thi4 family ApbA PF02558.11 gi|345004585|ref|YP_004807438.1| - 0.0073 15.7 0.2 0.012 15.1 0.2 1.4 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA OCD_Mu_crystall PF02423.10 gi|345004585|ref|YP_004807438.1| - 0.014 14.1 0.6 0.019 13.7 0.4 1.2 1 0 0 1 1 1 0 Ornithine cyclodeaminase/mu-crystallin family NAD_binding_2 PF03446.10 gi|345004585|ref|YP_004807438.1| - 0.014 15.2 0.1 0.02 14.7 0.0 1.4 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_Gly3P_dh_N PF01210.18 gi|345004585|ref|YP_004807438.1| - 0.017 14.8 0.2 0.027 14.1 0.2 1.4 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Pyr_redox_2 PF07992.9 gi|345004585|ref|YP_004807438.1| - 0.019 14.8 0.6 0.027 14.3 0.4 1.3 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.1 gi|345004585|ref|YP_004807438.1| - 0.029 14.3 2.1 0.082 12.9 1.5 1.8 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain AlaDh_PNT_C PF01262.16 gi|345004585|ref|YP_004807438.1| - 0.04 13.4 1.6 0.087 12.3 1.1 1.6 1 1 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain 3HCDH_N PF02737.13 gi|345004585|ref|YP_004807438.1| - 0.072 12.7 2.1 0.14 11.7 1.4 1.5 1 1 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ThiF PF00899.16 gi|345004585|ref|YP_004807438.1| - 0.21 11.4 3.1 0.36 10.6 1.4 2.0 1 1 1 2 2 2 0 ThiF family Pyr_redox PF00070.22 gi|345004585|ref|YP_004807438.1| - 0.63 10.4 2.7 2.2 8.7 1.7 2.0 1 1 1 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Na_Ca_ex PF01699.19 gi|345004586|ref|YP_004807439.1| - 9.1e-18 64.2 20.2 2.1e-09 37.1 4.3 2.6 2 0 0 2 2 2 2 Sodium/calcium exchanger protein tRNA_deacylase PF04414.7 gi|345004587|ref|YP_004807440.1| - 2.7e-56 190.0 0.0 4.5e-56 189.3 0.0 1.2 1 0 0 1 1 1 1 D-aminoacyl-tRNA deacylase FtsZ_C PF12327.3 gi|345004588|ref|YP_004807441.1| - 5.6e-36 122.5 1.8 5.6e-36 122.5 1.2 2.0 2 0 0 2 2 2 1 FtsZ family, C-terminal domain Tubulin PF00091.20 gi|345004588|ref|YP_004807441.1| - 2.7e-35 122.1 1.2 6.7e-35 120.8 0.9 1.6 1 1 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain DUF1469 PF07332.6 gi|345004590|ref|YP_004807443.1| - 1.1 8.9 3.8 1.3 8.7 2.6 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1469) Spt5-NGN PF03439.8 gi|345004591|ref|YP_004807444.1| - 7e-25 86.5 0.2 1.1e-24 85.9 0.1 1.3 1 0 0 1 1 1 1 Early transcription elongation factor of RNA pol II, NGN section KOW PF00467.24 gi|345004591|ref|YP_004807444.1| - 1.4e-07 30.8 0.8 3.3e-07 29.7 0.2 1.9 2 0 0 2 2 2 1 KOW motif NusG PF02357.14 gi|345004591|ref|YP_004807444.1| - 0.0011 19.0 0.0 0.03 14.5 0.0 2.3 1 1 0 1 1 1 1 Transcription termination factor nusG NTP_transferase PF00483.18 gi|345004592|ref|YP_004807445.1| - 2.1e-37 128.7 0.0 2.6e-37 128.4 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.2 gi|345004592|ref|YP_004807445.1| - 6.7e-10 39.2 0.0 8.8e-10 38.8 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep PF00132.19 gi|345004592|ref|YP_004807445.1| - 0.026 14.0 1.1 0.31 10.6 0.0 3.0 3 0 0 3 3 3 0 Bacterial transferase hexapeptide (six repeats) IspD PF01128.14 gi|345004592|ref|YP_004807445.1| - 0.046 13.2 0.0 0.13 11.7 0.0 1.7 2 0 0 2 2 2 0 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Pentapeptide_3 PF13576.1 gi|345004592|ref|YP_004807445.1| - 0.065 13.1 0.1 0.37 10.7 0.0 2.3 2 0 0 2 2 2 0 Pentapeptide repeats (9 copies) HTH_20 PF12840.2 gi|345004593|ref|YP_004807446.1| - 2.2e-05 24.1 0.1 3.2e-05 23.6 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|345004593|ref|YP_004807446.1| - 4.5e-05 23.0 0.0 6.4e-05 22.5 0.0 1.2 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.1 gi|345004593|ref|YP_004807446.1| - 5.3e-05 22.5 0.0 7.9e-05 21.9 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_23 PF13384.1 gi|345004593|ref|YP_004807446.1| - 0.00031 20.2 0.0 0.00045 19.7 0.0 1.3 1 0 0 1 1 1 1 Homeodomain-like domain TrmB PF01978.14 gi|345004593|ref|YP_004807446.1| - 0.0019 17.8 0.0 0.0026 17.4 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.5 gi|345004593|ref|YP_004807446.1| - 0.03 13.9 0.0 0.048 13.2 0.0 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain zf-trcl PF13451.1 gi|345004593|ref|YP_004807446.1| - 0.033 13.8 0.8 0.033 13.8 0.6 2.0 1 1 1 2 2 2 0 Probable zinc-binding domain HTH_38 PF13936.1 gi|345004593|ref|YP_004807446.1| - 0.05 13.1 0.1 0.075 12.5 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_10 PF04967.7 gi|345004593|ref|YP_004807446.1| - 0.12 11.9 0.0 0.24 11.0 0.0 1.5 1 0 0 1 1 1 0 HTH DNA binding domain zf-ISL3 PF14690.1 gi|345004593|ref|YP_004807446.1| - 0.3 11.1 2.2 6.3 6.9 0.2 2.4 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 DHH PF01368.15 gi|345004594|ref|YP_004807447.1| - 6e-15 55.1 0.0 1.1e-14 54.3 0.0 1.3 1 0 0 1 1 1 1 DHH family DHHA1 PF02272.14 gi|345004594|ref|YP_004807447.1| - 3e-13 49.2 0.4 9e-13 47.7 0.3 1.8 1 0 0 1 1 1 1 DHHA1 domain TrkA_N PF02254.13 gi|345004594|ref|YP_004807447.1| - 8e-08 32.2 0.1 2.3e-07 30.7 0.1 1.8 1 0 0 1 1 1 1 TrkA-N domain NAD_binding_7 PF13241.1 gi|345004594|ref|YP_004807447.1| - 0.054 13.7 0.0 0.17 12.1 0.0 1.8 1 0 0 1 1 1 0 Putative NAD(P)-binding ApbA PF02558.11 gi|345004594|ref|YP_004807447.1| - 0.087 12.2 0.0 0.15 11.4 0.0 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA CBS PF00571.23 gi|345004595|ref|YP_004807448.1| - 2.3e-28 97.6 3.1 5.8e-14 51.6 0.0 2.7 3 0 0 3 3 3 2 CBS domain ParBc PF02195.13 gi|345004595|ref|YP_004807448.1| - 1.5e-09 37.8 0.2 7.7e-09 35.5 0.2 2.2 1 1 0 1 1 1 1 ParB-like nuclease domain ParBc_2 PF08857.6 gi|345004595|ref|YP_004807448.1| - 0.0044 16.8 0.0 0.016 15.0 0.0 1.9 1 1 0 1 1 1 1 Putative ParB-like nuclease Auto_anti-p27 PF06677.7 gi|345004596|ref|YP_004807449.1| - 1 9.2 5.7 2.4 8.0 0.4 2.7 3 0 0 3 3 3 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Peptidase_M24 PF00557.19 gi|345004597|ref|YP_004807450.1| - 4.3e-66 222.4 0.9 5.3e-66 222.1 0.6 1.1 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.13 gi|345004597|ref|YP_004807450.1| - 5.5e-23 81.9 0.0 1.6e-22 80.4 0.0 1.8 2 0 0 2 2 2 1 Creatinase/Prolidase N-terminal domain CPSase_L_chain PF00289.17 gi|345004597|ref|YP_004807450.1| - 0.02 14.9 0.0 0.041 13.9 0.0 1.4 1 0 0 1 1 1 0 Carbamoyl-phosphate synthase L chain, N-terminal domain HTH_10 PF04967.7 gi|345004598|ref|YP_004807451.1| - 1.1e-21 76.1 0.0 3.7e-21 74.4 0.0 2.0 2 0 0 2 2 2 1 HTH DNA binding domain GAF_2 PF13185.1 gi|345004598|ref|YP_004807451.1| - 2e-11 44.5 0.4 2e-11 44.5 0.3 2.6 3 1 0 3 3 3 1 GAF domain PAS_9 PF13426.1 gi|345004598|ref|YP_004807451.1| - 6.6e-09 36.0 0.0 1.8e-08 34.7 0.0 1.8 1 0 0 1 1 1 1 PAS domain GAF PF01590.21 gi|345004598|ref|YP_004807451.1| - 1.4e-07 31.8 0.0 3.2e-07 30.5 0.0 1.9 1 1 0 1 1 1 1 GAF domain PAS_4 PF08448.5 gi|345004598|ref|YP_004807451.1| - 2.9e-07 30.4 0.6 1.6e-06 28.1 0.0 2.5 2 1 1 3 3 3 1 PAS fold PAS_3 PF08447.6 gi|345004598|ref|YP_004807451.1| - 2.4e-06 27.5 0.0 4.8e-06 26.5 0.0 1.6 1 0 0 1 1 1 1 PAS fold PAS PF00989.19 gi|345004598|ref|YP_004807451.1| - 8.4e-06 25.5 0.0 2.2e-05 24.2 0.0 1.7 1 0 0 1 1 1 1 PAS fold GAF_3 PF13492.1 gi|345004598|ref|YP_004807451.1| - 9.8e-06 25.6 0.0 2.5e-05 24.3 0.0 1.6 1 0 0 1 1 1 1 GAF domain Sigma70_r4 PF04545.11 gi|345004598|ref|YP_004807451.1| - 0.016 14.5 0.0 0.042 13.1 0.0 1.7 1 0 0 1 1 1 0 Sigma-70, region 4 Collagen PF01391.13 gi|345004598|ref|YP_004807451.1| - 0.026 14.0 17.2 0.062 12.8 11.9 1.6 1 0 0 1 1 1 0 Collagen triple helix repeat (20 copies) Sigma70_r4_2 PF08281.7 gi|345004598|ref|YP_004807451.1| - 0.096 12.1 0.0 0.7 9.4 0.0 2.1 2 0 0 2 2 2 0 Sigma-70, region 4 HTH_24 PF13412.1 gi|345004598|ref|YP_004807451.1| - 0.16 11.4 0.0 0.28 10.6 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding GerE PF00196.14 gi|345004598|ref|YP_004807451.1| - 0.16 11.2 0.0 1.2 8.5 0.0 2.2 1 1 0 1 1 1 0 Bacterial regulatory proteins, luxR family UPF0122 PF04297.9 gi|345004598|ref|YP_004807451.1| - 0.17 11.9 0.0 0.33 11.0 0.0 1.3 1 0 0 1 1 1 0 Putative helix-turn-helix protein, YlxM / p13 like DUF2580 PF10824.3 gi|345004598|ref|YP_004807451.1| - 3.7 7.9 6.8 1.3 9.4 0.2 3.3 3 0 0 3 3 3 0 Protein of unknown function (DUF2580) RHH_1 PF01402.16 gi|345004599|ref|YP_004807452.1| - 0.056 13.3 0.0 0.077 12.9 0.0 1.2 1 0 0 1 1 1 0 Ribbon-helix-helix protein, copG family DNA_pol_alpha_N PF12254.3 gi|345004599|ref|YP_004807452.1| - 0.12 12.2 0.2 0.16 11.7 0.1 1.2 1 0 0 1 1 1 0 DNA polymerase alpha subunit p180 N terminal OrfB_Zn_ribbon PF07282.6 gi|345004600|ref|YP_004807453.1| - 1.2e-21 76.1 0.8 2.2e-21 75.3 0.5 1.4 1 0 0 1 1 1 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.14 gi|345004600|ref|YP_004807453.1| - 0.00086 18.7 0.0 0.0016 17.8 0.0 1.4 1 0 0 1 1 1 1 Probable transposase tRNA_edit PF04073.10 gi|345004603|ref|YP_004807456.1| - 5.1e-29 100.6 0.0 6.1e-29 100.3 0.0 1.1 1 0 0 1 1 1 1 Aminoacyl-tRNA editing domain Oxidored_q1 PF00361.15 gi|345004605|ref|YP_004807458.1| - 1e-57 195.4 10.5 1e-57 195.4 7.3 1.8 2 0 0 2 2 2 1 NADH-Ubiquinone/plastoquinone (complex I), various chains Oxidored_q1_N PF00662.15 gi|345004605|ref|YP_004807458.1| - 0.0024 17.3 0.7 0.0093 15.5 0.5 2.0 1 0 0 1 1 1 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Oxidored_q1 PF00361.15 gi|345004606|ref|YP_004807459.1| - 2.9e-65 220.2 21.0 6.6e-65 219.0 14.6 1.7 1 0 0 1 1 1 1 NADH-Ubiquinone/plastoquinone (complex I), various chains Oxidored_q5_N PF01059.12 gi|345004606|ref|YP_004807459.1| - 5.7e-05 22.9 1.7 5.7e-05 22.9 1.2 2.9 3 0 0 3 3 3 1 NADH-ubiquinone oxidoreductase chain 4, amino terminus Oxidored_q1 PF00361.15 gi|345004607|ref|YP_004807460.1| - 1.6e-72 243.9 14.8 1.6e-72 243.9 10.2 1.9 2 0 0 2 2 2 1 NADH-Ubiquinone/plastoquinone (complex I), various chains Oxidored_q1_N PF00662.15 gi|345004607|ref|YP_004807460.1| - 7.7e-11 41.3 0.0 2.3e-10 39.8 0.0 1.8 1 0 0 1 1 1 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Oxidored_q1_C PF01010.14 gi|345004607|ref|YP_004807460.1| - 6.9e-05 22.4 0.0 0.00014 21.4 0.0 1.4 1 0 0 1 1 1 1 NADH-Ubiquinone oxidoreductase (complex I) subunit C-terminus Oxidored_q2 PF00420.19 gi|345004608|ref|YP_004807461.1| - 3.9e-21 74.4 6.8 4.1e-21 74.3 4.7 1.0 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L TMEM138 PF14935.1 gi|345004608|ref|YP_004807461.1| - 0.04 14.2 1.7 0.096 13.0 1.1 1.5 1 1 0 1 1 1 0 Transmembrane protein 138 DUF4059 PF13268.1 gi|345004608|ref|YP_004807461.1| - 0.16 12.1 2.1 0.16 12.1 0.1 2.0 2 1 0 2 2 2 0 Protein of unknown function (DUF4059) YiaAB PF05360.9 gi|345004608|ref|YP_004807461.1| - 1.8 8.1 7.8 0.47 10.0 0.4 2.4 2 0 0 2 2 2 0 yiaA/B two helix domain PqiA PF04403.8 gi|345004609|ref|YP_004807462.1| - 0.051 13.1 1.5 0.34 10.4 0.1 2.1 2 0 0 2 2 2 0 Paraquat-inducible protein A PsbM PF05151.7 gi|345004609|ref|YP_004807462.1| - 1.4 8.5 4.8 3.1 7.4 3.3 1.5 1 0 0 1 1 1 0 Photosystem II reaction centre M protein (PsbM) Oxidored_q3 PF00499.15 gi|345004610|ref|YP_004807463.1| - 1.8e-13 50.5 2.7 1.8e-13 50.5 1.9 1.3 1 1 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 DUF4040 PF13244.1 gi|345004610|ref|YP_004807463.1| - 0.09 12.7 9.8 0.11 12.5 6.4 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4040) TM2 PF05154.11 gi|345004610|ref|YP_004807463.1| - 3.8 7.8 7.9 2 8.6 2.1 2.1 2 0 0 2 2 2 0 TM2 domain Glucos_trans_II PF14264.1 gi|345004610|ref|YP_004807463.1| - 5.3 5.9 9.9 6.3 5.6 6.9 1.0 1 0 0 1 1 1 0 Glucosyl transferase GtrII Fer4 PF00037.22 gi|345004611|ref|YP_004807464.1| - 1.1e-12 46.9 9.0 7.4e-07 28.5 1.6 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|345004611|ref|YP_004807464.1| - 3.8e-11 43.1 10.3 6.1e-11 42.5 7.2 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|345004611|ref|YP_004807464.1| - 3.9e-10 39.3 6.8 6.5e-10 38.6 4.7 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|345004611|ref|YP_004807464.1| - 7.8e-10 38.4 8.8 1.1e-09 38.0 6.1 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|345004611|ref|YP_004807464.1| - 3.4e-09 37.3 5.3 1.5e-05 25.6 0.1 2.3 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_9 PF13187.1 gi|345004611|ref|YP_004807464.1| - 1.1e-08 35.1 11.7 3.1e-08 33.7 8.2 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|345004611|ref|YP_004807464.1| - 2e-08 33.7 12.6 0.0004 20.1 1.3 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|345004611|ref|YP_004807464.1| - 7.1e-08 32.3 9.8 3.2e-07 30.2 7.4 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|345004611|ref|YP_004807464.1| - 1e-07 31.4 9.6 0.00025 20.7 0.9 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.2 gi|345004611|ref|YP_004807464.1| - 3.5e-07 30.0 8.9 0.0015 18.7 1.3 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.1 gi|345004611|ref|YP_004807464.1| - 1.7e-05 25.0 12.2 0.0068 16.7 8.8 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|345004611|ref|YP_004807464.1| - 7.5e-05 23.0 11.9 0.018 15.4 1.3 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|345004611|ref|YP_004807464.1| - 0.00015 22.0 14.2 0.0036 17.7 2.3 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_15 PF13459.1 gi|345004611|ref|YP_004807464.1| - 0.0043 17.5 8.8 0.26 11.9 0.5 2.5 2 1 0 2 2 2 2 4Fe-4S single cluster domain Fer4_13 PF13370.1 gi|345004611|ref|YP_004807464.1| - 0.039 14.3 12.4 0.34 11.3 0.7 2.7 3 0 0 3 3 2 0 4Fe-4S single cluster domain NADHdh PF00146.16 gi|345004612|ref|YP_004807465.1| - 1.2e-83 280.7 13.2 1.5e-83 280.4 9.1 1.0 1 0 0 1 1 1 1 NADH dehydrogenase Complex1_49kDa PF00346.14 gi|345004613|ref|YP_004807466.1| - 8e-65 218.5 0.0 2.4e-42 144.7 0.0 2.1 1 1 1 2 2 2 2 Respiratory-chain NADH dehydrogenase, 49 Kd subunit Complex1_30kDa PF00329.14 gi|345004613|ref|YP_004807466.1| - 1.8e-29 101.9 0.1 3.6e-29 101.0 0.1 1.4 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 30 Kd subunit Oxidored_q6 PF01058.17 gi|345004614|ref|YP_004807467.1| - 5.9e-22 77.6 0.2 8.6e-22 77.1 0.2 1.2 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit Oxidored_q4 PF00507.14 gi|345004615|ref|YP_004807468.1| - 1.1e-26 92.5 0.1 1.4e-26 92.2 0.0 1.1 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 DUF3188 PF11384.3 gi|345004615|ref|YP_004807468.1| - 0.07 12.7 1.7 3.2 7.4 0.0 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3188) TrbC PF04956.8 gi|345004615|ref|YP_004807468.1| - 0.59 10.1 6.6 1.1 9.3 0.6 2.3 2 0 0 2 2 2 0 TrbC/VIRB2 family Ndr PF03096.9 gi|345004616|ref|YP_004807469.1| - 0.0042 15.5 0.0 0.0058 15.1 0.0 1.1 1 0 0 1 1 1 1 Ndr family AIRC PF00731.15 gi|345004618|ref|YP_004807471.1| - 3e-50 169.3 0.0 3.6e-50 169.1 0.0 1.1 1 0 0 1 1 1 1 AIR carboxylase ATP-grasp PF02222.17 gi|345004619|ref|YP_004807472.1| - 1.8e-50 170.6 0.0 3e-50 169.9 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_4 PF13535.1 gi|345004619|ref|YP_004807472.1| - 1.1e-13 51.3 0.1 2.1e-13 50.4 0.1 1.4 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_3 PF02655.9 gi|345004619|ref|YP_004807472.1| - 3.7e-06 26.9 0.1 1.2e-05 25.2 0.0 1.9 2 1 0 2 2 2 1 ATP-grasp domain 2-Hacid_dh_C PF02826.14 gi|345004619|ref|YP_004807472.1| - 2.8e-05 23.3 0.0 5.1e-05 22.5 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ATPgrasp_Ter PF15632.1 gi|345004619|ref|YP_004807472.1| - 0.0045 15.7 0.0 0.014 14.1 0.0 1.7 2 0 0 2 2 2 1 ATP-grasp in the biosynthetic pathway with Ter operon XdhC_C PF13478.1 gi|345004619|ref|YP_004807472.1| - 0.012 15.8 0.0 0.046 14.0 0.0 2.0 2 0 0 2 2 2 0 XdhC Rossmann domain 3HCDH_N PF02737.13 gi|345004619|ref|YP_004807472.1| - 0.029 14.0 0.0 0.089 12.4 0.0 1.8 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Methyltransf_26 PF13659.1 gi|345004619|ref|YP_004807472.1| - 0.033 14.1 0.5 0.11 12.5 0.0 2.0 2 1 0 2 2 2 0 Methyltransferase domain PMT_2 PF13231.1 gi|345004620|ref|YP_004807473.1| - 1.5e-11 44.4 5.0 1.5e-11 44.4 3.4 2.4 3 0 0 3 3 3 1 Dolichyl-phosphate-mannose-protein mannosyltransferase PMT PF02366.13 gi|345004620|ref|YP_004807473.1| - 1.7e-06 27.5 5.2 1.7e-06 27.5 3.6 2.1 1 1 1 2 2 2 1 Dolichyl-phosphate-mannose-protein mannosyltransferase Usp PF00582.21 gi|345004621|ref|YP_004807474.1| - 4.9e-58 195.2 9.4 1.1e-28 100.1 0.4 2.1 2 0 0 2 2 2 2 Universal stress protein family DUF2563 PF10817.3 gi|345004621|ref|YP_004807474.1| - 0.12 12.8 3.6 0.37 11.2 0.5 2.7 3 1 0 3 3 3 0 Protein of unknown function (DUF2563) XPA_N PF01286.13 gi|345004622|ref|YP_004807475.1| - 0.0047 16.5 1.5 0.0047 16.5 1.0 1.8 2 0 0 2 2 2 1 XPA protein N-terminal DICT PF10069.4 gi|345004624|ref|YP_004807477.1| - 1.7e-19 69.6 0.0 2.4e-19 69.1 0.0 1.2 1 0 0 1 1 1 1 Sensory domain found in DIguanylate Cyclases & Two-component systems PyrI PF01948.13 gi|345004625|ref|YP_004807478.1| - 3.4e-34 116.7 0.0 4.2e-34 116.4 0.0 1.1 1 0 0 1 1 1 1 Aspartate carbamoyltransferase regulatory chain, allosteric domain PyrI_C PF02748.10 gi|345004625|ref|YP_004807478.1| - 5.1e-17 61.0 0.8 8e-17 60.4 0.6 1.3 1 0 0 1 1 1 1 Aspartate carbamoyltransferase regulatory chain, metal binding domain OTCace_N PF02729.16 gi|345004626|ref|YP_004807479.1| - 2.8e-43 146.9 0.0 1.3e-42 144.8 0.0 1.9 2 0 0 2 2 2 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain OTCace PF00185.19 gi|345004626|ref|YP_004807479.1| - 1.1e-35 122.8 0.0 1.5e-35 122.4 0.0 1.2 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain MutS_V PF00488.16 gi|345004627|ref|YP_004807480.1| - 1.2e-08 34.6 0.0 1.9e-08 34.0 0.0 1.3 1 0 0 1 1 1 1 MutS domain V AAA_10 PF12846.2 gi|345004627|ref|YP_004807480.1| - 0.0028 17.1 0.7 0.17 11.2 0.0 3.0 2 2 1 3 3 3 1 AAA-like domain AAA_28 PF13521.1 gi|345004627|ref|YP_004807480.1| - 0.0037 17.2 3.1 0.026 14.4 0.1 2.9 2 1 0 2 2 2 1 AAA domain AAA_21 PF13304.1 gi|345004627|ref|YP_004807480.1| - 0.012 15.6 0.0 0.032 14.1 0.0 1.6 2 0 0 2 2 2 0 AAA domain AAA_14 PF13173.1 gi|345004627|ref|YP_004807480.1| - 0.026 14.4 0.0 0.049 13.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain IMS_HHH PF11798.3 gi|345004627|ref|YP_004807480.1| - 0.033 14.2 0.0 0.085 12.9 0.0 1.8 1 0 0 1 1 1 0 IMS family HHH motif ComX PF05952.7 gi|345004627|ref|YP_004807480.1| - 0.23 11.0 0.0 0.45 10.0 0.0 1.4 1 0 0 1 1 1 0 Bacillus competence pheromone ComX DUF4404 PF14357.1 gi|345004627|ref|YP_004807480.1| - 0.6 10.5 5.6 2.2 8.7 0.0 3.3 3 0 0 3 3 3 0 Domain of unknown function (DUF4404) FAD_binding_1 PF00667.15 gi|345004629|ref|YP_004807482.1| - 0.054 12.9 0.0 0.069 12.5 0.0 1.1 1 0 0 1 1 1 0 FAD binding domain FYVE PF01363.16 gi|345004630|ref|YP_004807483.1| - 0.009 15.8 0.9 0.014 15.2 0.6 1.4 1 1 0 1 1 1 1 FYVE zinc finger zf-AD PF07776.10 gi|345004630|ref|YP_004807483.1| - 0.02 14.8 0.4 0.045 13.7 0.0 1.7 1 1 1 2 2 2 0 Zinc-finger associated domain (zf-AD) DZR PF12773.2 gi|345004630|ref|YP_004807483.1| - 0.12 12.2 2.2 0.77 9.6 1.8 1.8 1 1 0 1 1 1 0 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|345004630|ref|YP_004807483.1| - 0.21 11.0 1.2 0.73 9.3 0.1 2.0 2 0 0 2 2 2 0 zinc-ribbon domain Urotensin_II PF02083.10 gi|345004630|ref|YP_004807483.1| - 0.64 9.4 5.5 1.3 8.5 3.8 1.5 1 0 0 1 1 1 0 Urotensin II Sulf_transp PF04143.9 gi|345004631|ref|YP_004807484.1| - 8e-08 32.1 10.0 8e-08 32.1 6.9 2.8 3 0 0 3 3 3 2 Sulphur transport DUF2627 PF11118.3 gi|345004631|ref|YP_004807484.1| - 4.3 7.5 5.6 0.99 9.5 0.1 2.5 2 1 1 3 3 3 0 Protein of unknown function (DUF2627) DUF4341 PF14241.1 gi|345004632|ref|YP_004807485.1| - 1.2e-17 63.3 1.0 1.2e-17 63.3 0.7 2.6 3 0 0 3 3 3 1 Domain of unknown function (DUF4341) Sulf_transp PF04143.9 gi|345004632|ref|YP_004807485.1| - 4.2e-10 39.4 5.6 4.2e-10 39.4 3.9 2.9 3 0 0 3 3 3 2 Sulphur transport Vac14_Fab1_bd PF12755.2 gi|345004632|ref|YP_004807485.1| - 0.15 12.4 0.0 0.25 11.7 0.0 1.3 1 0 0 1 1 1 0 Vacuolar 14 Fab1-binding region DUF2029 PF09594.5 gi|345004632|ref|YP_004807485.1| - 0.17 11.3 10.4 0.037 13.5 2.5 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF2029) MFS_1 PF07690.11 gi|345004633|ref|YP_004807486.1| - 1.6e-32 112.6 64.6 5.2e-28 97.7 25.2 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.2 gi|345004633|ref|YP_004807486.1| - 0.0013 18.5 3.0 0.024 14.4 0.0 3.2 3 0 0 3 3 3 1 MFS_1 like family DUF1625 PF07787.7 gi|345004633|ref|YP_004807486.1| - 1.3 8.2 3.8 2.5 7.2 1.9 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF1625) DUF2614 PF11023.3 gi|345004633|ref|YP_004807486.1| - 8.5 6.2 6.3 1.2 8.9 0.1 2.5 3 0 0 3 3 3 0 Protein of unknown function (DUF2614) Acyl-CoA_dh_1 PF00441.19 gi|345004634|ref|YP_004807487.1| - 9.1e-41 139.4 2.5 1.1e-40 139.1 1.1 1.6 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.11 gi|345004634|ref|YP_004807487.1| - 1.2e-22 80.6 2.3 1.2e-22 80.6 1.6 1.9 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_M PF02770.14 gi|345004634|ref|YP_004807487.1| - 4.3e-21 74.1 0.4 8.3e-21 73.2 0.3 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.6 gi|345004634|ref|YP_004807487.1| - 1.7e-16 60.7 1.2 3.9e-16 59.5 0.8 1.7 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain AMP-binding PF00501.23 gi|345004635|ref|YP_004807488.1| - 5.3e-88 295.1 0.6 6.9e-88 294.8 0.4 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|345004635|ref|YP_004807488.1| - 2e-15 57.4 0.3 5.7e-15 56.0 0.2 1.8 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain DRTGG PF07085.7 gi|345004635|ref|YP_004807488.1| - 0.068 12.7 0.0 2.1 8.0 0.0 2.8 3 0 0 3 3 3 0 DRTGG domain Glyoxalase_4 PF13669.1 gi|345004637|ref|YP_004807490.1| - 3.2e-21 75.3 0.0 3.7e-21 75.1 0.0 1.1 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase PF00903.20 gi|345004637|ref|YP_004807490.1| - 1.6e-12 47.5 0.1 1.8e-12 47.3 0.1 1.0 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_2 PF12681.2 gi|345004637|ref|YP_004807490.1| - 8.8e-12 45.5 0.1 1e-11 45.3 0.1 1.1 1 0 0 1 1 1 1 Glyoxalase-like domain Glyoxalase_3 PF13468.1 gi|345004637|ref|YP_004807490.1| - 1.6e-10 41.1 1.1 2e-10 40.8 0.8 1.2 1 0 0 1 1 1 1 Glyoxalase-like domain Glyoxalase_5 PF14696.1 gi|345004637|ref|YP_004807490.1| - 0.038 13.9 0.0 0.071 13.0 0.0 1.6 1 1 0 1 1 1 0 Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal Robl_LC7 PF03259.12 gi|345004637|ref|YP_004807490.1| - 0.07 12.7 0.0 0.12 11.9 0.0 1.3 1 0 0 1 1 1 0 Roadblock/LC7 domain MM_CoA_mutase PF01642.17 gi|345004639|ref|YP_004807492.1| - 1.1e-199 663.8 2.8 1.2e-199 663.7 1.9 1.0 1 0 0 1 1 1 1 Methylmalonyl-CoA mutase CopD PF05425.8 gi|345004640|ref|YP_004807493.1| - 1e-05 25.6 7.7 1e-05 25.6 5.4 1.8 1 1 1 2 2 2 1 Copper resistance protein D Methyltransf_3 PF01596.12 gi|345004641|ref|YP_004807494.1| - 2e-18 66.2 0.0 3.4e-18 65.4 0.0 1.4 1 1 0 1 1 1 1 O-methyltransferase Methyltransf_24 PF13578.1 gi|345004641|ref|YP_004807494.1| - 2.2e-11 44.4 0.1 5.9e-11 43.1 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|345004641|ref|YP_004807494.1| - 1.8e-09 38.1 0.0 3.7e-09 37.1 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|345004641|ref|YP_004807494.1| - 1.1e-07 31.8 0.0 2.2e-07 30.8 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|345004641|ref|YP_004807494.1| - 0.0001 21.9 0.0 0.00012 21.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|345004641|ref|YP_004807494.1| - 0.00028 20.3 0.0 0.0004 19.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Spermine_synth PF01564.12 gi|345004641|ref|YP_004807494.1| - 0.0018 17.2 0.0 0.0023 16.8 0.0 1.2 1 0 0 1 1 1 1 Spermine/spermidine synthase CMAS PF02353.15 gi|345004641|ref|YP_004807494.1| - 0.013 14.5 0.0 0.016 14.2 0.0 1.1 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase Methyltransf_11 PF08241.7 gi|345004641|ref|YP_004807494.1| - 0.033 14.6 0.0 0.061 13.8 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_12 PF08242.7 gi|345004641|ref|YP_004807494.1| - 0.097 13.1 0.0 0.17 12.3 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain Peptidase_S15 PF02129.13 gi|345004642|ref|YP_004807495.1| - 2.5e-52 178.0 0.7 3.6e-52 177.4 0.5 1.3 1 0 0 1 1 1 1 X-Pro dipeptidyl-peptidase (S15 family) PepX_C PF08530.5 gi|345004642|ref|YP_004807495.1| - 3.2e-44 151.4 0.5 4.7e-44 150.8 0.4 1.3 1 0 0 1 1 1 1 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain Peptidase_S9 PF00326.16 gi|345004642|ref|YP_004807495.1| - 0.003 16.8 1.8 0.0074 15.5 0.6 2.0 2 0 0 2 2 2 1 Prolyl oligopeptidase family Abhydrolase_5 PF12695.2 gi|345004642|ref|YP_004807495.1| - 0.0051 16.5 0.2 0.011 15.4 0.1 1.5 1 0 0 1 1 1 1 Alpha/beta hydrolase family Creatininase PF02633.9 gi|345004643|ref|YP_004807496.1| - 2.8e-69 232.8 3.7 3.2e-69 232.6 2.5 1.0 1 0 0 1 1 1 1 Creatinine amidohydrolase NAC PF01849.13 gi|345004644|ref|YP_004807497.1| - 1.6e-19 69.1 0.3 2.9e-19 68.3 0.2 1.4 1 0 0 1 1 1 1 NAC domain UBA_4 PF14555.1 gi|345004644|ref|YP_004807497.1| - 9.5e-05 21.8 0.1 0.00019 20.8 0.0 1.5 1 0 0 1 1 1 1 UBA-like domain UBA PF00627.26 gi|345004644|ref|YP_004807497.1| - 0.00071 19.3 0.5 0.0065 16.2 0.0 2.2 2 0 0 2 2 2 1 UBA/TS-N domain Fucose_iso_N2 PF07882.7 gi|345004644|ref|YP_004807497.1| - 0.096 12.3 0.2 0.13 11.9 0.2 1.2 1 0 0 1 1 1 0 L-fucose isomerase, second N-terminal domain GCD14 PF08704.5 gi|345004645|ref|YP_004807498.1| - 2.3e-18 66.6 0.0 7.5e-15 55.0 0.0 2.1 1 1 1 2 2 2 2 tRNA methyltransferase complex GCD14 subunit Methyltransf_18 PF12847.2 gi|345004645|ref|YP_004807498.1| - 3.5e-13 50.0 0.1 5.3e-13 49.5 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|345004645|ref|YP_004807498.1| - 4.3e-12 46.0 1.4 1.7e-11 44.1 0.9 1.9 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|345004645|ref|YP_004807498.1| - 1.2e-09 37.8 0.0 1.6e-09 37.5 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|345004645|ref|YP_004807498.1| - 1.1e-07 31.4 0.1 1.9e-07 30.6 0.1 1.5 1 1 0 1 1 1 1 Methyltransferase small domain Methyltransf_3 PF01596.12 gi|345004645|ref|YP_004807498.1| - 3.3e-07 29.5 0.0 4.2e-07 29.2 0.0 1.1 1 0 0 1 1 1 1 O-methyltransferase Methyltransf_23 PF13489.1 gi|345004645|ref|YP_004807498.1| - 3.7e-06 26.7 0.0 7.7e-06 25.7 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain PrmA PF06325.8 gi|345004645|ref|YP_004807498.1| - 2.6e-05 23.5 0.4 3.3e-05 23.1 0.3 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_24 PF13578.1 gi|345004645|ref|YP_004807498.1| - 3.6e-05 24.5 0.6 7.4e-05 23.5 0.1 1.7 2 0 0 2 2 1 1 Methyltransferase domain RrnaAD PF00398.15 gi|345004645|ref|YP_004807498.1| - 5.7e-05 22.2 0.0 7.9e-05 21.8 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Cons_hypoth95 PF03602.10 gi|345004645|ref|YP_004807498.1| - 0.00017 21.0 0.1 0.00034 20.0 0.0 1.6 1 1 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_12 PF08242.7 gi|345004645|ref|YP_004807498.1| - 0.00029 21.2 0.1 0.00056 20.3 0.1 1.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|345004645|ref|YP_004807498.1| - 0.00032 21.1 0.1 0.00055 20.3 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_15 PF09445.5 gi|345004645|ref|YP_004807498.1| - 0.0012 18.4 0.0 0.0016 18.0 0.0 1.1 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase ADH_zinc_N PF00107.21 gi|345004645|ref|YP_004807498.1| - 0.0043 16.6 0.8 0.0066 16.0 0.5 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase PCMT PF01135.14 gi|345004645|ref|YP_004807498.1| - 0.0048 16.4 0.2 0.0063 16.0 0.1 1.1 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_25 PF13649.1 gi|345004645|ref|YP_004807498.1| - 0.05 13.9 0.1 0.076 13.3 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain Met_10 PF02475.11 gi|345004645|ref|YP_004807498.1| - 0.08 12.5 0.0 0.11 12.0 0.0 1.2 1 0 0 1 1 1 0 Met-10+ like-protein TFIIS_C PF01096.13 gi|345004646|ref|YP_004807499.1| - 4.5e-18 64.6 5.8 4.5e-18 64.6 4.0 2.9 3 1 0 3 3 3 1 Transcription factor S-II (TFIIS) RNA_POL_M_15KD PF02150.11 gi|345004646|ref|YP_004807499.1| - 2.7e-06 26.9 12.6 4.1e-06 26.3 0.8 3.2 3 0 0 3 3 3 1 RNA polymerases M/15 Kd subunit OrfB_Zn_ribbon PF07282.6 gi|345004646|ref|YP_004807499.1| - 2.5e-05 23.8 12.6 0.017 14.7 2.4 2.4 2 1 0 2 2 2 2 Putative transposase DNA-binding domain UPF0547 PF10571.4 gi|345004646|ref|YP_004807499.1| - 5.3e-05 22.8 12.0 0.0077 15.9 0.0 3.8 4 0 0 4 4 4 2 Uncharacterised protein family UPF0547 TF_Zn_Ribbon PF08271.7 gi|345004646|ref|YP_004807499.1| - 7.3e-05 22.0 1.3 7.3e-05 22.0 0.9 3.2 2 2 0 2 2 2 1 TFIIB zinc-binding DUF2387 PF09526.5 gi|345004646|ref|YP_004807499.1| - 0.00013 21.7 8.5 0.0053 16.6 0.8 2.4 2 0 0 2 2 2 2 Probable metal-binding protein (DUF2387) DZR PF12773.2 gi|345004646|ref|YP_004807499.1| - 0.00019 21.1 10.6 0.19 11.5 7.4 2.8 1 1 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|345004646|ref|YP_004807499.1| - 0.0011 18.1 7.6 0.71 9.1 0.1 3.8 4 0 0 4 4 4 1 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|345004646|ref|YP_004807499.1| - 0.0013 18.4 0.8 0.0013 18.4 0.5 2.4 2 1 0 2 2 2 1 Transposase zinc-ribbon domain Terminase_GpA PF05876.7 gi|345004646|ref|YP_004807499.1| - 0.0045 15.4 1.3 0.0063 14.9 0.9 1.3 1 0 0 1 1 1 1 Phage terminase large subunit (GpA) Lar_restr_allev PF14354.1 gi|345004646|ref|YP_004807499.1| - 0.0088 16.3 1.4 0.0088 16.3 1.0 2.8 2 1 0 2 2 2 1 Restriction alleviation protein Lar zinc_ribbon_2 PF13240.1 gi|345004646|ref|YP_004807499.1| - 0.0099 15.3 10.3 1.2 8.7 0.2 3.6 4 0 0 4 4 3 1 zinc-ribbon domain zf-ISL3 PF14690.1 gi|345004646|ref|YP_004807499.1| - 0.026 14.5 2.8 0.7 9.9 0.0 3.1 3 0 0 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-RING_4 PF14570.1 gi|345004646|ref|YP_004807499.1| - 0.032 13.7 10.5 0.68 9.5 0.1 3.3 3 0 0 3 3 3 0 RING/Ubox like zinc-binding domain DUF164 PF02591.10 gi|345004646|ref|YP_004807499.1| - 0.042 13.6 1.9 21 5.0 0.0 3.2 3 0 0 3 3 3 0 Putative zinc ribbon domain FdhE PF04216.7 gi|345004646|ref|YP_004807499.1| - 0.049 13.3 0.2 0.049 13.3 0.1 1.7 2 0 0 2 2 2 0 Protein involved in formate dehydrogenase formation Prok-RING_1 PF14446.1 gi|345004646|ref|YP_004807499.1| - 0.09 12.5 8.2 2.5 7.8 0.9 3.2 3 0 0 3 3 3 0 Prokaryotic RING finger family 1 zinc_ribbon_5 PF13719.1 gi|345004646|ref|YP_004807499.1| - 0.095 12.3 4.3 6.1 6.5 0.0 2.9 3 0 0 3 3 3 0 zinc-ribbon domain zf-IS66 PF13005.2 gi|345004646|ref|YP_004807499.1| - 0.12 12.3 11.6 1.5 8.8 0.1 3.7 4 1 0 4 4 3 0 zinc-finger binding domain of transposase IS66 DNA_RNApol_7kD PF03604.8 gi|345004646|ref|YP_004807499.1| - 0.12 11.8 11.0 1.2 8.7 0.1 3.5 3 1 0 3 3 3 0 DNA directed RNA polymerase, 7 kDa subunit YhfH PF14149.1 gi|345004646|ref|YP_004807499.1| - 0.14 12.0 11.2 7.5 6.4 2.4 3.3 3 0 0 3 3 3 0 YhfH-like protein zinc_ribbon_4 PF13717.1 gi|345004646|ref|YP_004807499.1| - 0.18 11.4 5.2 5.3 6.8 0.0 2.8 3 0 0 3 3 3 0 zinc-ribbon domain Nudix_N_2 PF14803.1 gi|345004646|ref|YP_004807499.1| - 0.22 11.2 12.6 0.84 9.3 0.1 3.2 3 1 0 3 3 2 0 Nudix N-terminal Ogr_Delta PF04606.7 gi|345004646|ref|YP_004807499.1| - 0.62 9.7 11.2 0.29 10.8 1.9 2.8 2 2 0 2 2 2 0 Ogr/Delta-like zinc finger DUF2296 PF10058.4 gi|345004646|ref|YP_004807499.1| - 0.72 9.6 3.0 7.4 6.4 0.0 2.9 3 0 0 3 3 3 0 Predicted integral membrane metal-binding protein (DUF2296) Rubredoxin PF00301.15 gi|345004646|ref|YP_004807499.1| - 1.5 8.7 13.8 2.6 7.9 0.1 3.9 3 1 2 5 5 5 0 Rubredoxin zf-NADH-PPase PF09297.6 gi|345004646|ref|YP_004807499.1| - 2.7 7.5 11.2 5 6.7 1.2 3.1 3 0 0 3 3 3 0 NADH pyrophosphatase zinc ribbon domain zf-HYPF PF07503.7 gi|345004646|ref|YP_004807499.1| - 2.9 7.4 6.2 6.6 6.2 0.0 3.1 3 0 0 3 3 3 0 HypF finger Baculo_LEF5_C PF11792.3 gi|345004646|ref|YP_004807499.1| - 3.6 7.0 8.6 0.5 9.8 1.3 2.6 3 0 0 3 3 2 0 Baculoviridae late expression factor 5 C-terminal domain DUF3716 PF12511.3 gi|345004646|ref|YP_004807499.1| - 4.1 7.0 7.3 0.098 12.2 0.6 1.6 2 0 0 2 2 1 0 Protein of unknown function (DUF3716) PolC_DP2 PF03833.8 gi|345004646|ref|YP_004807499.1| - 4.5 4.7 7.5 2.1 5.9 0.8 1.9 1 1 1 2 2 2 0 DNA polymerase II large subunit DP2 RRN7 PF11781.3 gi|345004646|ref|YP_004807499.1| - 9 5.8 15.4 11 5.6 0.2 4.2 3 1 0 3 3 3 0 RNA polymerase I-specific transcription initiation factor Rrn7 C1_1 PF00130.17 gi|345004646|ref|YP_004807499.1| - 9.9 5.9 9.7 20 5.0 0.6 2.6 2 1 0 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) HypA PF01155.14 gi|345004648|ref|YP_004807501.1| - 0.0011 18.6 0.7 0.0012 18.4 0.5 1.1 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family Ribosomal_L37e PF01907.14 gi|345004648|ref|YP_004807501.1| - 0.0054 16.5 2.2 0.007 16.1 1.5 1.1 1 0 0 1 1 1 1 Ribosomal protein L37e DZR PF12773.2 gi|345004648|ref|YP_004807501.1| - 0.012 15.4 2.3 0.013 15.2 1.6 1.1 1 0 0 1 1 1 0 Double zinc ribbon RNA_POL_M_15KD PF02150.11 gi|345004648|ref|YP_004807501.1| - 0.17 11.6 0.2 0.17 11.6 0.2 1.9 1 1 1 2 2 2 0 RNA polymerases M/15 Kd subunit zf-TFIIB PF13453.1 gi|345004648|ref|YP_004807501.1| - 0.33 10.1 11.1 24 4.2 7.7 2.3 1 1 0 1 1 1 0 Transcription factor zinc-finger zf-ribbon_3 PF13248.1 gi|345004648|ref|YP_004807501.1| - 0.92 8.8 8.2 1.3 8.2 5.7 1.3 1 0 0 1 1 1 0 zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|345004648|ref|YP_004807501.1| - 1.3 9.0 10.2 47 4.0 7.1 2.1 1 1 0 1 1 1 0 Zinc ribbon domain zf-CSL PF05207.8 gi|345004648|ref|YP_004807501.1| - 1.5 8.3 6.5 1.3 8.5 0.4 2.1 1 1 1 2 2 2 0 CSL zinc finger OrfB_Zn_ribbon PF07282.6 gi|345004648|ref|YP_004807501.1| - 2.1 8.0 5.8 3.3 7.4 0.2 2.0 1 1 2 3 3 3 0 Putative transposase DNA-binding domain zf-ISL3 PF14690.1 gi|345004648|ref|YP_004807501.1| - 4.6 7.3 7.8 2.4 8.2 1.0 2.1 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 ECH PF00378.15 gi|345004649|ref|YP_004807502.1| - 2e-59 200.6 0.1 2.4e-59 200.4 0.0 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase family SDH_sah PF01972.11 gi|345004649|ref|YP_004807502.1| - 0.002 16.9 0.0 0.0028 16.4 0.0 1.2 1 0 0 1 1 1 1 Serine dehydrogenase proteinase Flavin_Reduct PF01613.13 gi|345004650|ref|YP_004807503.1| - 1.5e-21 76.8 0.0 2e-21 76.4 0.0 1.1 1 0 0 1 1 1 1 Flavin reductase like domain DUF1678 PF07913.6 gi|345004651|ref|YP_004807504.1| - 0.089 12.3 0.0 0.2 11.1 0.0 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF1678) DUF21 PF01595.15 gi|345004652|ref|YP_004807505.1| - 4.2e-37 127.1 6.3 4.7e-37 127.0 4.4 1.0 1 0 0 1 1 1 1 Domain of unknown function DUF21 RskA PF10099.4 gi|345004652|ref|YP_004807505.1| - 2.6 7.7 5.8 0.46 10.1 0.4 2.0 1 1 2 3 3 3 0 Anti-sigma-K factor rskA GHMP_kinases_N PF00288.21 gi|345004653|ref|YP_004807506.1| - 2.8e-05 24.0 4.6 0.00013 21.9 3.3 2.0 1 1 1 2 2 2 1 GHMP kinases N terminal domain Amidohydro_4 PF13147.1 gi|345004653|ref|YP_004807506.1| - 0.02 14.9 3.4 0.034 14.1 2.0 1.4 1 1 0 1 1 1 0 Amidohydrolase DUF2125 PF09898.4 gi|345004653|ref|YP_004807506.1| - 0.076 12.3 1.6 0.068 12.4 0.4 1.5 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2125) NAD_kinase PF01513.16 gi|345004654|ref|YP_004807507.1| - 1.8e-46 158.1 0.0 2.1e-46 158.0 0.0 1.0 1 0 0 1 1 1 1 ATP-NAD kinase DAGK_cat PF00781.19 gi|345004654|ref|YP_004807507.1| - 3.8e-06 26.3 2.7 4.3e-06 26.1 0.1 2.4 3 0 0 3 3 3 1 Diacylglycerol kinase catalytic domain Peripla_BP_6 PF13458.1 gi|345004654|ref|YP_004807507.1| - 0.006 15.9 1.1 0.0092 15.3 0.2 1.7 2 0 0 2 2 2 1 Periplasmic binding protein SPOR PF05036.8 gi|345004654|ref|YP_004807507.1| - 0.026 14.6 0.2 0.81 9.8 0.0 3.2 3 0 0 3 3 3 0 Sporulation related domain MoCF_biosynth PF00994.19 gi|345004656|ref|YP_004807509.1| - 1.3e-36 125.1 0.3 1.8e-36 124.6 0.2 1.2 1 0 0 1 1 1 1 Probable molybdopterin binding domain Methyltransf_11 PF08241.7 gi|345004657|ref|YP_004807510.1| - 2e-18 66.6 0.0 3.5e-18 65.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|345004657|ref|YP_004807510.1| - 2.1e-12 47.6 0.1 3.2e-12 47.0 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|345004657|ref|YP_004807510.1| - 3.9e-11 43.1 0.0 6.3e-11 42.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|345004657|ref|YP_004807510.1| - 9e-11 41.7 0.0 1.1e-10 41.4 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|345004657|ref|YP_004807510.1| - 1.5e-10 40.8 0.0 1.9e-10 40.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|345004657|ref|YP_004807510.1| - 1.6e-10 41.3 0.0 2.8e-10 40.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|345004657|ref|YP_004807510.1| - 5.1e-08 32.3 0.0 6.8e-08 31.9 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_26 PF13659.1 gi|345004657|ref|YP_004807510.1| - 1.2e-05 25.3 0.9 1.9e-05 24.6 0.6 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_9 PF08003.6 gi|345004657|ref|YP_004807510.1| - 0.00074 18.3 0.0 0.00084 18.1 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) TehB PF03848.9 gi|345004657|ref|YP_004807510.1| - 0.0035 16.5 0.0 0.0046 16.1 0.0 1.3 1 0 0 1 1 1 1 Tellurite resistance protein TehB PCMT PF01135.14 gi|345004657|ref|YP_004807510.1| - 0.0073 15.8 0.0 0.0093 15.5 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) TPMT PF05724.6 gi|345004657|ref|YP_004807510.1| - 0.0076 15.7 0.0 0.012 15.0 0.0 1.5 1 1 0 1 1 1 1 Thiopurine S-methyltransferase (TPMT) NodS PF05401.6 gi|345004657|ref|YP_004807510.1| - 0.0093 15.3 0.0 0.014 14.8 0.0 1.2 1 0 0 1 1 1 1 Nodulation protein S (NodS) Methyltransf_8 PF05148.10 gi|345004657|ref|YP_004807510.1| - 0.0095 15.5 0.0 0.041 13.5 0.0 1.8 1 1 0 1 1 1 1 Hypothetical methyltransferase MTS PF05175.9 gi|345004657|ref|YP_004807510.1| - 0.013 14.8 0.0 0.018 14.3 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase small domain MetW PF07021.7 gi|345004657|ref|YP_004807510.1| - 0.026 13.8 0.0 0.033 13.5 0.0 1.2 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW FtsJ PF01728.14 gi|345004657|ref|YP_004807510.1| - 0.057 13.4 0.0 0.3 11.0 0.0 1.9 1 1 0 1 1 1 0 FtsJ-like methyltransferase Methyltransf_32 PF13679.1 gi|345004657|ref|YP_004807510.1| - 0.088 12.4 0.0 0.14 11.8 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain CMAS PF02353.15 gi|345004657|ref|YP_004807510.1| - 0.088 11.8 0.0 0.11 11.5 0.0 1.1 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase Methyltransf_4 PF02390.12 gi|345004657|ref|YP_004807510.1| - 0.1 11.6 0.0 0.3 10.1 0.0 1.8 1 1 0 1 1 1 0 Putative methyltransferase T2SF PF00482.18 gi|345004658|ref|YP_004807511.1| - 5.3e-32 110.3 5.9 1.3e-19 70.3 0.6 2.6 2 0 0 2 2 2 2 Type II secretion system (T2SS), protein F UPF0014 PF03649.8 gi|345004658|ref|YP_004807511.1| - 0.00065 18.9 0.1 0.0015 17.7 0.1 1.6 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0014) T2SE PF00437.15 gi|345004659|ref|YP_004807512.1| - 2e-47 161.3 0.0 3e-47 160.8 0.0 1.1 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_29 PF13555.1 gi|345004659|ref|YP_004807512.1| - 0.028 13.9 0.0 0.052 13.0 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_18 PF13238.1 gi|345004659|ref|YP_004807512.1| - 0.086 13.1 0.0 0.27 11.5 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_22 PF13401.1 gi|345004659|ref|YP_004807512.1| - 0.089 12.9 0.0 0.41 10.8 0.0 2.0 2 0 0 2 2 2 0 AAA domain DUF1328 PF07043.8 gi|345004662|ref|YP_004807515.1| - 7e-12 45.1 18.1 1.3e-11 44.2 12.5 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF1328) TauE PF01925.14 gi|345004662|ref|YP_004807515.1| - 0.0075 15.7 10.5 0.0078 15.6 7.3 1.0 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE AWPM-19 PF05512.6 gi|345004662|ref|YP_004807515.1| - 0.027 14.4 1.4 0.033 14.1 1.0 1.3 1 1 0 1 1 1 0 AWPM-19-like family DUF3784 PF12650.2 gi|345004662|ref|YP_004807515.1| - 1.2 9.0 7.8 1.7 8.6 5.4 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF3784) TraG_N PF07916.6 gi|345004662|ref|YP_004807515.1| - 2.7 6.3 4.9 3.1 6.1 3.4 1.1 1 0 0 1 1 1 0 TraG-like protein, N-terminal region ABC2_membrane_2 PF12679.2 gi|345004662|ref|YP_004807515.1| - 4.9 5.9 9.2 5.7 5.7 6.4 1.1 1 0 0 1 1 1 0 ABC-2 family transporter protein DUF2207 PF09972.4 gi|345004662|ref|YP_004807515.1| - 5.4 5.4 7.7 5.2 5.5 5.3 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) Glycophorin_A PF01102.13 gi|345004662|ref|YP_004807515.1| - 9.5 6.0 6.3 0.5 10.1 0.2 1.8 2 0 0 2 2 2 0 Glycophorin A Claudin_2 PF13903.1 gi|345004663|ref|YP_004807516.1| - 0.0016 18.1 2.7 0.049 13.3 0.5 2.2 2 0 0 2 2 2 2 PMP-22/EMP/MP20/Claudin tight junction DUF4231 PF14015.1 gi|345004663|ref|YP_004807516.1| - 1.4 8.9 11.1 2.3 8.2 4.0 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF4231) DUF1772 PF08592.6 gi|345004663|ref|YP_004807516.1| - 4.3 7.0 12.1 5.5 6.7 4.7 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF1772) Abhydrolase_3 PF07859.8 gi|345004664|ref|YP_004807517.1| - 3.1e-68 229.4 0.7 4.5e-68 228.9 0.5 1.2 1 0 0 1 1 1 1 alpha/beta hydrolase fold COesterase PF00135.23 gi|345004664|ref|YP_004807517.1| - 1.3e-07 30.7 0.5 2.8e-07 29.6 0.3 1.5 1 1 0 1 1 1 1 Carboxylesterase family Abhydrolase_5 PF12695.2 gi|345004664|ref|YP_004807517.1| - 2.9e-06 27.1 0.9 4.3e-06 26.5 0.1 1.7 2 0 0 2 2 2 1 Alpha/beta hydrolase family AXE1 PF05448.7 gi|345004664|ref|YP_004807517.1| - 0.091 11.2 0.0 5.4 5.4 0.0 2.1 2 0 0 2 2 2 0 Acetyl xylan esterase (AXE1) TAT_signal PF10518.4 gi|345004665|ref|YP_004807518.1| - 0.22 11.6 2.2 0.41 10.7 1.5 1.5 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence DAGK_cat PF00781.19 gi|345004666|ref|YP_004807519.1| - 1.3e-22 79.5 0.3 2.3e-22 78.7 0.2 1.4 1 0 0 1 1 1 1 Diacylglycerol kinase catalytic domain NAD_kinase PF01513.16 gi|345004666|ref|YP_004807519.1| - 0.00012 20.9 0.8 0.00022 20.1 0.2 1.7 2 0 0 2 2 2 1 ATP-NAD kinase DDE_Tnp_IS66 PF03050.9 gi|345004667|ref|YP_004807520.1| - 8.4e-53 179.3 0.1 8.4e-53 179.3 0.1 2.3 2 1 1 3 3 3 1 Transposase IS66 family DUF904 PF06005.7 gi|345004667|ref|YP_004807520.1| - 2.7e-10 40.3 5.7 9e-10 38.7 3.9 1.9 1 0 0 1 1 1 1 Protein of unknown function (DUF904) DUF972 PF06156.8 gi|345004667|ref|YP_004807520.1| - 0.00018 21.8 4.6 0.00052 20.3 3.2 1.7 1 0 0 1 1 1 1 Protein of unknown function (DUF972) CASP_C PF08172.7 gi|345004667|ref|YP_004807520.1| - 0.00025 20.1 2.2 0.00042 19.4 1.5 1.2 1 0 0 1 1 1 1 CASP C terminal bZIP_1 PF00170.16 gi|345004667|ref|YP_004807520.1| - 0.0021 17.9 7.9 0.0043 16.9 5.5 1.5 1 0 0 1 1 1 1 bZIP transcription factor SPX PF03105.14 gi|345004667|ref|YP_004807520.1| - 0.0024 17.7 0.1 0.0035 17.1 0.1 1.2 1 0 0 1 1 1 1 SPX domain Striatin PF08232.7 gi|345004667|ref|YP_004807520.1| - 0.0024 18.1 4.3 0.0051 17.1 3.0 1.5 1 0 0 1 1 1 1 Striatin family Tektin PF03148.9 gi|345004667|ref|YP_004807520.1| - 0.0041 15.7 2.6 0.0067 15.0 1.8 1.2 1 0 0 1 1 1 1 Tektin family DDE_Tnp_IS240 PF13610.1 gi|345004667|ref|YP_004807520.1| - 0.0083 16.1 0.7 0.018 15.0 0.0 1.9 2 1 0 2 2 1 1 DDE domain HOOK PF05622.7 gi|345004667|ref|YP_004807520.1| - 0.011 13.5 2.2 0.016 13.0 1.6 1.1 1 0 0 1 1 1 0 HOOK protein zf-IS66 PF13005.2 gi|345004667|ref|YP_004807520.1| - 0.017 15.1 8.8 0.047 13.6 6.1 1.8 1 1 0 1 1 1 0 zinc-finger binding domain of transposase IS66 HALZ PF02183.13 gi|345004667|ref|YP_004807520.1| - 0.033 13.8 5.2 0.094 12.4 3.6 1.8 1 0 0 1 1 1 0 Homeobox associated leucine zipper FlaC_arch PF05377.6 gi|345004667|ref|YP_004807520.1| - 0.035 13.9 2.8 0.079 12.8 2.0 1.6 1 0 0 1 1 1 0 Flagella accessory protein C (FlaC) ERM PF00769.14 gi|345004667|ref|YP_004807520.1| - 0.049 13.1 6.2 0.11 11.9 4.3 1.5 1 0 0 1 1 1 0 Ezrin/radixin/moesin family Fmp27_WPPW PF10359.4 gi|345004667|ref|YP_004807520.1| - 0.057 11.8 1.7 0.078 11.3 1.2 1.1 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain IncA PF04156.9 gi|345004667|ref|YP_004807520.1| - 0.059 12.9 6.1 0.12 11.9 4.2 1.5 1 0 0 1 1 1 0 IncA protein GAS PF13851.1 gi|345004667|ref|YP_004807520.1| - 0.071 12.3 5.1 0.13 11.4 3.5 1.3 1 0 0 1 1 1 0 Growth-arrest specific micro-tubule binding V_ATPase_I PF01496.14 gi|345004667|ref|YP_004807520.1| - 0.081 10.7 2.2 0.1 10.4 1.5 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family DUF1875 PF08961.5 gi|345004667|ref|YP_004807520.1| - 0.099 11.9 3.5 0.17 11.1 2.4 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1875) SpoVR PF04293.8 gi|345004667|ref|YP_004807520.1| - 0.12 10.7 4.7 0.18 10.1 3.2 1.2 1 0 0 1 1 1 0 SpoVR like protein NUDE_C PF04880.8 gi|345004667|ref|YP_004807520.1| - 0.16 12.3 3.2 0.3 11.4 2.2 1.4 1 0 0 1 1 1 0 NUDE protein, C-terminal conserved region TMF_DNA_bd PF12329.3 gi|345004667|ref|YP_004807520.1| - 0.19 11.5 8.9 0.46 10.3 6.2 1.5 1 0 0 1 1 1 0 TATA element modulatory factor 1 DNA binding Shugoshin_N PF07558.6 gi|345004667|ref|YP_004807520.1| - 0.33 10.7 5.9 0.15 11.8 1.9 2.0 1 1 0 1 1 1 0 Shugoshin N-terminal coiled-coil region Atg14 PF10186.4 gi|345004667|ref|YP_004807520.1| - 0.36 9.7 3.5 0.66 8.8 2.5 1.4 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 DivIC PF04977.10 gi|345004667|ref|YP_004807520.1| - 0.36 10.3 8.3 0.86 9.1 5.4 1.8 1 1 0 1 1 1 0 Septum formation initiator Daxx PF03344.10 gi|345004667|ref|YP_004807520.1| - 0.4 9.1 6.8 0.6 8.5 4.7 1.2 1 0 0 1 1 1 0 Daxx Family Sipho_Gp157 PF05565.6 gi|345004667|ref|YP_004807520.1| - 0.45 10.0 3.1 0.72 9.4 2.1 1.2 1 0 0 1 1 1 0 Siphovirus Gp157 Synaptobrevin PF00957.16 gi|345004667|ref|YP_004807520.1| - 0.46 10.1 2.2 0.84 9.2 1.5 1.3 1 0 0 1 1 1 0 Synaptobrevin ADIP PF11559.3 gi|345004667|ref|YP_004807520.1| - 0.56 10.0 7.1 1.2 9.0 4.9 1.5 1 0 0 1 1 1 0 Afadin- and alpha -actinin-Binding DUF2205 PF10224.4 gi|345004667|ref|YP_004807520.1| - 0.6 9.7 6.0 1.2 8.7 4.2 1.4 1 0 0 1 1 1 0 Predicted coiled-coil protein (DUF2205) TBPIP PF07106.8 gi|345004667|ref|YP_004807520.1| - 0.73 9.3 5.0 0.41 10.1 2.0 1.7 2 0 0 2 2 1 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) EMP24_GP25L PF01105.19 gi|345004667|ref|YP_004807520.1| - 0.82 9.3 6.0 6.1 6.5 2.9 2.1 2 0 0 2 2 2 0 emp24/gp25L/p24 family/GOLD Prefoldin_2 PF01920.15 gi|345004667|ref|YP_004807520.1| - 0.85 9.4 8.1 1.6 8.4 5.6 1.4 1 0 0 1 1 1 0 Prefoldin subunit bZIP_2 PF07716.10 gi|345004667|ref|YP_004807520.1| - 0.86 9.4 14.5 0.8 9.5 6.4 2.6 1 1 1 2 2 2 0 Basic region leucine zipper APG6 PF04111.7 gi|345004667|ref|YP_004807520.1| - 2.2 7.2 7.1 3.5 6.5 4.9 1.2 1 0 0 1 1 1 0 Autophagy protein Apg6 NYD-SP28_assoc PF14775.1 gi|345004667|ref|YP_004807520.1| - 3.1 7.5 9.2 5.8 6.6 5.2 2.3 1 1 1 2 2 2 0 Sperm tail C-terminal domain TSC22 PF01166.13 gi|345004667|ref|YP_004807520.1| - 3.5 7.6 14.5 28 4.7 8.0 3.2 2 1 0 2 2 2 0 TSC-22/dip/bun family Whirly PF08536.6 gi|345004668|ref|YP_004807521.1| - 0.049 13.0 0.0 0.087 12.2 0.0 1.4 1 0 0 1 1 1 0 Whirly transcription factor DUF2238 PF09997.4 gi|345004668|ref|YP_004807521.1| - 0.1 12.0 4.1 1.9 7.8 2.8 2.3 1 1 0 1 1 1 0 Predicted membrane protein (DUF2238) PsbN PF02468.10 gi|345004668|ref|YP_004807521.1| - 6.7 6.4 6.3 11 5.7 0.0 3.3 3 1 1 4 4 4 0 Photosystem II reaction centre N protein (psbN) DsbD_2 PF13386.1 gi|345004669|ref|YP_004807522.1| - 2.4 7.8 11.0 3.3 7.4 0.9 2.9 2 1 1 3 3 3 0 Cytochrome C biogenesis protein transmembrane region Acetyltransf_10 PF13673.1 gi|345004671|ref|YP_004807524.1| - 2e-11 44.0 0.0 2.9e-11 43.5 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|345004671|ref|YP_004807524.1| - 2.1e-05 24.5 0.0 3.5e-05 23.8 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|345004671|ref|YP_004807524.1| - 3.1e-05 23.9 0.0 4.9e-05 23.2 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_9 PF13527.1 gi|345004671|ref|YP_004807524.1| - 0.0032 17.3 0.0 0.0053 16.5 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Ribosomal_S27 PF01599.14 gi|345004671|ref|YP_004807524.1| - 0.0045 16.7 0.9 0.0083 15.9 0.7 1.4 1 0 0 1 1 1 1 Ribosomal protein S27a zf-NADH-PPase PF09297.6 gi|345004671|ref|YP_004807524.1| - 0.03 13.8 1.5 0.067 12.7 1.1 1.6 1 0 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain Acetyltransf_13 PF13880.1 gi|345004671|ref|YP_004807524.1| - 0.044 13.5 0.0 0.083 12.6 0.0 1.5 1 0 0 1 1 1 0 ESCO1/2 acetyl-transferase Tnp_P_element_C PF12596.3 gi|345004671|ref|YP_004807524.1| - 0.052 13.8 0.1 0.12 12.6 0.1 1.6 1 0 0 1 1 1 0 87kDa Transposase DZR PF12773.2 gi|345004671|ref|YP_004807524.1| - 0.053 13.3 0.5 0.09 12.6 0.4 1.3 1 0 0 1 1 1 0 Double zinc ribbon HypA PF01155.14 gi|345004671|ref|YP_004807524.1| - 0.059 13.0 0.1 0.13 11.9 0.1 1.6 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family OrfB_Zn_ribbon PF07282.6 gi|345004671|ref|YP_004807524.1| - 0.07 12.8 1.1 0.12 12.0 0.7 1.3 1 0 0 1 1 1 0 Putative transposase DNA-binding domain Acetyltransf_CG PF14542.1 gi|345004671|ref|YP_004807524.1| - 0.11 12.4 0.0 0.2 11.5 0.0 1.5 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase Zn-ribbon_8 PF09723.5 gi|345004671|ref|YP_004807524.1| - 0.2 11.6 1.1 0.47 10.4 0.8 1.6 1 0 0 1 1 1 0 Zinc ribbon domain DNA_RNApol_7kD PF03604.8 gi|345004671|ref|YP_004807524.1| - 0.24 10.9 1.8 0.46 9.9 1.2 1.5 1 0 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit Nudix_N_2 PF14803.1 gi|345004671|ref|YP_004807524.1| - 0.29 10.8 5.6 1.6 8.4 3.9 2.1 1 1 0 1 1 1 0 Nudix N-terminal zf-ribbon_3 PF13248.1 gi|345004671|ref|YP_004807524.1| - 0.6 9.4 5.5 2.2 7.5 3.9 1.9 1 1 1 2 2 2 0 zinc-ribbon domain A2L_zn_ribbon PF08792.5 gi|345004671|ref|YP_004807524.1| - 0.66 9.5 2.9 1.3 8.5 2.0 1.4 1 0 0 1 1 1 0 A2L zinc ribbon domain zinc_ribbon_2 PF13240.1 gi|345004671|ref|YP_004807524.1| - 0.74 9.3 7.0 1.9 8.0 0.7 2.4 2 0 0 2 2 2 0 zinc-ribbon domain DUF2270 PF10028.4 gi|345004672|ref|YP_004807525.1| - 6.6e-58 195.2 3.2 7.8e-58 195.0 2.2 1.0 1 0 0 1 1 1 1 Predicted integral membrane protein (DUF2270) Acyl_transf_3 PF01757.17 gi|345004672|ref|YP_004807525.1| - 0.0059 15.4 0.6 0.0059 15.4 0.4 1.8 2 0 0 2 2 2 1 Acyltransferase family Yip1 PF04893.12 gi|345004672|ref|YP_004807525.1| - 0.014 14.8 1.0 1.3 8.4 0.0 2.1 2 0 0 2 2 2 0 Yip1 domain DUF4177 PF13783.1 gi|345004673|ref|YP_004807526.1| - 8.9e-12 44.4 0.1 1.1e-11 44.1 0.1 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4177) Glyoxalase_4 PF13669.1 gi|345004673|ref|YP_004807526.1| - 0.075 13.0 0.0 0.08 12.9 0.0 1.2 1 0 0 1 1 1 0 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RskA PF10099.4 gi|345004674|ref|YP_004807527.1| - 0.045 13.4 0.0 0.045 13.4 0.0 1.9 2 0 0 2 2 2 0 Anti-sigma-K factor rskA DUF3040 PF11239.3 gi|345004674|ref|YP_004807527.1| - 0.88 9.6 7.7 0.61 10.1 0.1 2.9 3 0 0 3 3 3 0 Protein of unknown function (DUF3040) SOR_SNZ PF01680.12 gi|345004675|ref|YP_004807528.1| - 3.6e-94 314.1 6.8 5e-94 313.7 4.7 1.2 1 0 0 1 1 1 1 SOR/SNZ family ThiG PF05690.9 gi|345004675|ref|YP_004807528.1| - 9e-10 38.0 5.1 6.9e-07 28.5 0.3 2.3 2 0 0 2 2 2 2 Thiazole biosynthesis protein ThiG Dus PF01207.12 gi|345004675|ref|YP_004807528.1| - 0.00043 19.1 1.2 0.2 10.4 0.1 2.3 2 0 0 2 2 2 2 Dihydrouridine synthase (Dus) IGPS PF00218.16 gi|345004675|ref|YP_004807528.1| - 0.0031 16.5 0.1 0.032 13.2 0.0 2.4 2 2 0 2 2 2 1 Indole-3-glycerol phosphate synthase OMPdecase PF00215.19 gi|345004675|ref|YP_004807528.1| - 0.0042 16.5 0.0 2.1 7.6 0.0 2.5 1 1 1 2 2 2 2 Orotidine 5'-phosphate decarboxylase / HUMPS family NanE PF04131.9 gi|345004675|ref|YP_004807528.1| - 0.022 13.7 0.6 0.26 10.2 0.0 2.4 2 1 0 2 2 2 0 Putative N-acetylmannosamine-6-phosphate epimerase NMO PF03060.10 gi|345004675|ref|YP_004807528.1| - 0.24 10.5 4.1 0.34 10.0 0.1 2.6 2 1 1 3 3 3 0 Nitronate monooxygenase DUF1405 PF07187.6 gi|345004676|ref|YP_004807529.1| - 1.2e-46 158.4 10.7 1.8e-46 157.8 7.4 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1405) COX7C PF02935.11 gi|345004676|ref|YP_004807529.1| - 0.058 13.2 0.4 0.2 11.4 0.3 1.9 1 0 0 1 1 1 0 Cytochrome c oxidase subunit VIIc Aconitase_C PF00694.14 gi|345004678|ref|YP_004807531.1| - 4.4e-21 75.3 0.0 6e-21 74.9 0.0 1.2 1 0 0 1 1 1 1 Aconitase C-terminal domain Aconitase PF00330.15 gi|345004679|ref|YP_004807532.1| - 1.4e-145 485.3 0.0 1.6e-145 485.1 0.0 1.0 1 0 0 1 1 1 1 Aconitase family (aconitate hydratase) IlvN PF07991.7 gi|345004681|ref|YP_004807534.1| - 3.2e-68 228.2 0.3 4.4e-68 227.8 0.2 1.2 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain IlvC PF01450.14 gi|345004681|ref|YP_004807534.1| - 2.4e-53 179.9 0.1 3.5e-53 179.4 0.1 1.2 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain F420_oxidored PF03807.12 gi|345004681|ref|YP_004807534.1| - 1.1e-08 35.4 0.1 2.2e-08 34.3 0.0 1.6 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.10 gi|345004681|ref|YP_004807534.1| - 5e-07 29.6 0.0 9e-07 28.8 0.0 1.4 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase 2-Hacid_dh_C PF02826.14 gi|345004681|ref|YP_004807534.1| - 1.3e-06 27.7 0.0 2.1e-06 27.0 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_Gly3P_dh_N PF01210.18 gi|345004681|ref|YP_004807534.1| - 0.009 15.7 0.5 0.13 11.9 0.4 2.1 1 1 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ApbA PF02558.11 gi|345004681|ref|YP_004807534.1| - 0.0091 15.4 0.0 0.017 14.5 0.0 1.5 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA CoA_binding_2 PF13380.1 gi|345004681|ref|YP_004807534.1| - 0.03 14.5 1.2 0.18 11.9 0.8 2.3 1 1 0 1 1 1 0 CoA binding domain 3HCDH_N PF02737.13 gi|345004681|ref|YP_004807534.1| - 0.036 13.7 0.3 0.11 12.0 0.1 1.9 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AdoHcyase_NAD PF00670.16 gi|345004681|ref|YP_004807534.1| - 0.036 13.9 0.1 0.079 12.7 0.1 1.5 1 0 0 1 1 1 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain NAD_binding_10 PF13460.1 gi|345004681|ref|YP_004807534.1| - 0.048 13.6 0.4 0.1 12.6 0.3 1.6 1 0 0 1 1 1 0 NADH(P)-binding ALS_ss_C PF10369.4 gi|345004682|ref|YP_004807535.1| - 3.5e-19 68.2 0.0 5.3e-19 67.7 0.0 1.3 1 0 0 1 1 1 1 Small subunit of acetolactate synthase ACT_5 PF13710.1 gi|345004682|ref|YP_004807535.1| - 3.4e-16 58.8 0.0 1.1e-14 54.0 0.0 2.2 2 0 0 2 2 2 1 ACT domain ACT PF01842.20 gi|345004682|ref|YP_004807535.1| - 2.5e-10 39.5 0.0 6.2e-10 38.3 0.0 1.7 1 0 0 1 1 1 1 ACT domain ACT_4 PF13291.1 gi|345004682|ref|YP_004807535.1| - 0.0055 17.0 0.0 0.012 15.9 0.0 1.6 1 0 0 1 1 1 1 ACT domain TPP_enzyme_N PF02776.13 gi|345004683|ref|YP_004807536.1| - 1.9e-52 177.2 2.2 1.9e-52 177.2 1.5 2.5 3 0 0 3 3 3 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.16 gi|345004683|ref|YP_004807536.1| - 3.3e-52 176.1 0.1 3.3e-52 176.1 0.1 2.1 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_M PF00205.17 gi|345004683|ref|YP_004807536.1| - 2.2e-42 144.0 0.1 7.4e-42 142.3 0.0 2.0 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, central domain CO_dh PF02552.11 gi|345004683|ref|YP_004807536.1| - 0.11 12.0 0.0 0.19 11.2 0.0 1.3 1 0 0 1 1 1 0 CO dehydrogenase beta subunit/acetyl-CoA synthase epsilon subunit ILVD_EDD PF00920.16 gi|345004684|ref|YP_004807537.1| - 6.1e-208 691.4 1.6 6.9e-208 691.2 1.1 1.0 1 0 0 1 1 1 1 Dehydratase family MR_MLE_C PF13378.1 gi|345004685|ref|YP_004807538.1| - 0.00074 19.4 0.0 0.0023 17.9 0.0 1.8 2 0 0 2 2 2 1 Enolase C-terminal domain-like Rieske PF00355.21 gi|345004686|ref|YP_004807539.1| - 3.5e-09 36.1 0.0 4.4e-09 35.8 0.0 1.2 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain NikR_C PF08753.6 gi|345004687|ref|YP_004807540.1| - 2.6e-20 72.0 1.9 3.5e-20 71.6 1.3 1.2 1 0 0 1 1 1 1 NikR C terminal nickel binding domain RHH_1 PF01402.16 gi|345004687|ref|YP_004807540.1| - 2.8e-05 23.8 0.0 4.6e-05 23.1 0.0 1.4 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family OrfB_IS605 PF01385.14 gi|345004689|ref|YP_004807542.1| - 2.9e-23 82.4 0.1 5.9e-23 81.4 0.1 1.5 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|345004689|ref|YP_004807542.1| - 8.2e-19 67.0 0.1 1.6e-18 66.1 0.1 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain HTH_OrfB_IS605 PF12323.3 gi|345004689|ref|YP_004807542.1| - 2.3e-05 23.6 0.1 5.3e-05 22.4 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain Zn_Tnp_IS91 PF14319.1 gi|345004689|ref|YP_004807542.1| - 0.01 15.3 1.0 0.029 13.8 0.7 1.7 1 0 0 1 1 1 0 Transposase zinc-binding domain DZR PF12773.2 gi|345004689|ref|YP_004807542.1| - 0.034 13.9 1.1 0.067 13.0 0.8 1.4 1 0 0 1 1 1 0 Double zinc ribbon DUF1777 PF08648.7 gi|345004689|ref|YP_004807542.1| - 0.051 13.3 4.5 1.7 8.3 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1777) PUF PF00806.14 gi|345004689|ref|YP_004807542.1| - 0.053 13.0 0.1 40 3.9 0.0 3.5 3 0 0 3 3 3 0 Pumilio-family RNA binding repeat zf-ribbon_3 PF13248.1 gi|345004689|ref|YP_004807542.1| - 0.64 9.2 3.1 2 7.7 0.1 2.2 1 1 1 2 2 2 0 zinc-ribbon domain HTH_29 PF13551.1 gi|345004690|ref|YP_004807543.1| - 4.7e-24 84.6 1.4 3.1e-23 82.0 0.2 2.2 2 0 0 2 2 2 1 Winged helix-turn helix DDE_3 PF13358.1 gi|345004690|ref|YP_004807543.1| - 7.6e-18 64.6 0.2 1.6e-17 63.6 0.0 1.6 2 0 0 2 2 2 1 DDE superfamily endonuclease HTH_23 PF13384.1 gi|345004690|ref|YP_004807543.1| - 2.5e-12 46.0 1.3 4e-11 42.1 0.2 2.9 3 0 0 3 3 3 1 Homeodomain-like domain HTH_32 PF13565.1 gi|345004690|ref|YP_004807543.1| - 6e-12 46.1 0.5 2.2e-11 44.3 0.3 2.0 1 0 0 1 1 1 1 Homeodomain-like domain HTH_28 PF13518.1 gi|345004690|ref|YP_004807543.1| - 4.6e-05 23.3 0.2 0.00029 20.7 0.0 2.2 2 0 0 2 2 2 1 Helix-turn-helix domain rve PF00665.21 gi|345004690|ref|YP_004807543.1| - 0.014 15.4 0.0 0.026 14.6 0.0 1.5 1 0 0 1 1 1 0 Integrase core domain HTH_Tnp_Tc3_2 PF01498.13 gi|345004690|ref|YP_004807543.1| - 0.083 12.9 0.3 0.21 11.6 0.0 1.8 2 0 0 2 2 2 0 Transposase ABC_tran PF00005.22 gi|345004691|ref|YP_004807544.1| - 5.8e-33 114.0 0.0 9.8e-33 113.3 0.0 1.4 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|345004691|ref|YP_004807544.1| - 3.6e-20 72.0 0.3 7.5e-20 71.0 0.2 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|345004691|ref|YP_004807544.1| - 1.9e-07 31.3 0.1 8.7e-06 25.8 0.0 2.3 1 1 0 2 2 2 1 AAA domain SMC_N PF02463.14 gi|345004691|ref|YP_004807544.1| - 0.00074 18.8 0.0 0.0014 17.9 0.0 1.4 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.1 gi|345004691|ref|YP_004807544.1| - 0.0059 16.7 0.6 0.065 13.3 0.4 2.4 2 1 0 2 2 2 1 AAA domain AAA_25 PF13481.1 gi|345004691|ref|YP_004807544.1| - 0.0065 15.8 0.0 0.019 14.3 0.0 1.7 2 0 0 2 2 2 1 AAA domain AAA_29 PF13555.1 gi|345004691|ref|YP_004807544.1| - 0.0076 15.7 0.1 0.017 14.6 0.1 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain DUF258 PF03193.11 gi|345004691|ref|YP_004807544.1| - 0.018 14.2 0.0 0.03 13.5 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_16 PF13191.1 gi|345004691|ref|YP_004807544.1| - 0.075 13.0 1.3 0.083 12.8 0.1 1.8 2 1 0 2 2 2 0 AAA ATPase domain NB-ARC PF00931.17 gi|345004691|ref|YP_004807544.1| - 0.11 11.3 0.0 0.18 10.5 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain ATP-synt_ab PF00006.20 gi|345004691|ref|YP_004807544.1| - 0.12 11.8 0.0 0.16 11.4 0.0 1.2 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain RNA_helicase PF00910.17 gi|345004691|ref|YP_004807544.1| - 0.18 11.9 0.0 0.33 11.1 0.0 1.4 1 0 0 1 1 1 0 RNA helicase ABC_tran PF00005.22 gi|345004692|ref|YP_004807545.1| - 2.4e-27 95.9 0.0 3.4e-27 95.4 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|345004692|ref|YP_004807545.1| - 3.2e-17 62.6 1.0 6.3e-17 61.6 0.7 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|345004692|ref|YP_004807545.1| - 2.5e-11 44.0 0.1 9.8e-10 38.8 0.0 2.1 1 1 1 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|345004692|ref|YP_004807545.1| - 1.9e-05 24.7 0.2 9.4e-05 22.5 0.1 1.9 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|345004692|ref|YP_004807545.1| - 0.00018 21.5 0.0 0.0003 20.8 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.1 gi|345004692|ref|YP_004807545.1| - 0.0018 17.7 0.0 0.0036 16.8 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.14 gi|345004692|ref|YP_004807545.1| - 0.0032 16.7 0.5 0.12 11.6 0.3 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_10 PF12846.2 gi|345004692|ref|YP_004807545.1| - 0.0068 15.8 0.3 0.17 11.2 0.1 2.4 1 1 1 2 2 2 1 AAA-like domain AAA_15 PF13175.1 gi|345004692|ref|YP_004807545.1| - 0.011 14.8 0.0 0.056 12.4 0.0 1.8 2 0 0 2 2 2 0 AAA ATPase domain ABC_ATPase PF09818.4 gi|345004692|ref|YP_004807545.1| - 0.012 14.2 1.7 0.078 11.5 1.2 2.0 1 1 0 1 1 1 0 Predicted ATPase of the ABC class ATP-synt_ab PF00006.20 gi|345004692|ref|YP_004807545.1| - 0.028 13.9 0.0 0.046 13.2 0.0 1.4 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain FtsK_SpoIIIE PF01580.13 gi|345004692|ref|YP_004807545.1| - 0.032 13.7 0.1 0.082 12.3 0.0 1.6 1 1 1 2 2 2 0 FtsK/SpoIIIE family AAA_25 PF13481.1 gi|345004692|ref|YP_004807545.1| - 0.046 13.1 0.1 1 8.7 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_5 PF07728.9 gi|345004692|ref|YP_004807545.1| - 0.074 12.7 0.0 0.16 11.7 0.0 1.5 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) Sigma54_activat PF00158.21 gi|345004692|ref|YP_004807545.1| - 0.093 12.1 0.1 0.3 10.5 0.0 1.8 2 0 0 2 2 2 0 Sigma-54 interaction domain BPD_transp_1 PF00528.17 gi|345004693|ref|YP_004807546.1| - 4.2e-22 78.5 9.2 4.2e-22 78.5 6.4 2.2 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.2 gi|345004693|ref|YP_004807546.1| - 1.6e-09 36.9 0.1 1.6e-09 36.9 0.1 2.2 2 0 0 2 2 2 1 N-terminal TM domain of oligopeptide transport permease C Chitin_synth_2 PF03142.10 gi|345004693|ref|YP_004807546.1| - 0.0053 15.1 0.5 0.011 14.0 0.4 1.4 1 0 0 1 1 1 1 Chitin synthase Chlorosome_CsmC PF11098.3 gi|345004693|ref|YP_004807546.1| - 0.14 11.8 0.8 0.33 10.6 0.6 1.6 1 0 0 1 1 1 0 Chlorosome envelope protein C BPD_transp_1 PF00528.17 gi|345004694|ref|YP_004807547.1| - 4.3e-32 111.1 10.8 4.3e-32 111.1 7.5 1.8 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component DUF1453 PF07301.6 gi|345004694|ref|YP_004807547.1| - 0.067 13.0 5.0 13 5.6 0.3 3.3 3 0 0 3 3 3 0 Protein of unknown function (DUF1453) SBP_bac_5 PF00496.17 gi|345004695|ref|YP_004807548.1| - 5.3e-47 160.4 4.8 7.2e-47 160.0 3.3 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle TAT_signal PF10518.4 gi|345004695|ref|YP_004807548.1| - 0.027 14.4 0.5 0.055 13.4 0.3 1.5 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence DUF3669 PF12417.3 gi|345004695|ref|YP_004807548.1| - 0.36 10.5 1.9 0.48 10.1 0.2 2.1 2 0 0 2 2 2 0 Zinc finger protein PQQ_2 PF13360.1 gi|345004696|ref|YP_004807549.1| - 5.8e-36 124.1 23.7 3.1e-27 95.5 8.7 3.8 1 1 2 3 3 3 3 PQQ-like domain PQQ_3 PF13570.1 gi|345004696|ref|YP_004807549.1| - 4.4e-34 115.7 37.2 5.8e-09 35.9 0.4 8.4 8 0 0 8 8 8 8 PQQ-like domain PQQ PF01011.16 gi|345004696|ref|YP_004807549.1| - 8.9e-21 72.3 9.5 9.5e-07 28.0 0.0 6.7 6 0 0 6 6 6 5 PQQ enzyme repeat Lactamase_B_3 PF13483.1 gi|345004697|ref|YP_004807550.1| - 5e-25 88.1 0.7 5e-25 88.1 0.5 1.3 2 0 0 2 2 2 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.2 gi|345004697|ref|YP_004807550.1| - 2.9e-16 59.5 1.4 4.3e-16 59.0 0.9 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|345004697|ref|YP_004807550.1| - 9.7e-05 22.0 13.2 0.00056 19.6 9.1 2.2 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily OsmC PF02566.14 gi|345004698|ref|YP_004807551.1| - 2.1e-10 40.6 0.0 2.8e-10 40.2 0.0 1.1 1 0 0 1 1 1 1 OsmC-like protein KaiC PF06745.8 gi|345004700|ref|YP_004807553.1| - 1.4e-08 34.1 0.0 0.00079 18.6 0.0 2.1 2 0 0 2 2 2 2 KaiC PAXNEB PF05625.6 gi|345004700|ref|YP_004807553.1| - 0.081 11.7 0.0 0.14 10.9 0.0 1.3 1 0 0 1 1 1 0 PAXNEB protein CbiA PF01656.18 gi|345004701|ref|YP_004807554.1| - 9.7e-17 61.0 0.3 1.2e-16 60.7 0.2 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_26 PF13500.1 gi|345004701|ref|YP_004807554.1| - 2e-05 24.2 0.6 0.037 13.6 0.0 2.2 2 0 0 2 2 2 2 AAA domain AAA_24 PF13479.1 gi|345004701|ref|YP_004807554.1| - 0.0045 16.5 0.0 0.0081 15.7 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_31 PF13614.1 gi|345004701|ref|YP_004807554.1| - 0.0065 16.4 0.0 0.052 13.4 0.0 2.0 1 1 0 1 1 1 1 AAA domain ParA PF10609.4 gi|345004701|ref|YP_004807554.1| - 0.0073 16.1 0.1 0.015 15.1 0.1 1.5 1 0 0 1 1 1 1 ParA/MinD ATPase like ThiG PF05690.9 gi|345004701|ref|YP_004807554.1| - 0.016 14.2 2.2 0.025 13.6 1.5 1.2 1 0 0 1 1 1 0 Thiazole biosynthesis protein ThiG ArsA_ATPase PF02374.10 gi|345004701|ref|YP_004807554.1| - 0.07 12.1 5.0 0.1 11.6 1.1 2.0 2 0 0 2 2 2 0 Anion-transporting ATPase MipZ PF09140.6 gi|345004701|ref|YP_004807554.1| - 0.096 11.7 0.1 0.16 11.0 0.1 1.4 1 1 0 1 1 1 0 ATPase MipZ AAA_25 PF13481.1 gi|345004701|ref|YP_004807554.1| - 0.11 11.9 2.1 0.26 10.6 1.5 1.9 1 1 0 1 1 1 0 AAA domain YhjQ PF06564.7 gi|345004701|ref|YP_004807554.1| - 0.16 11.3 0.5 6.8 5.9 0.1 2.1 2 0 0 2 2 2 0 YhjQ protein SRP54 PF00448.17 gi|345004701|ref|YP_004807554.1| - 0.25 10.7 1.6 3.6 6.9 1.1 2.1 1 1 0 1 1 1 0 SRP54-type protein, GTPase domain DUF964 PF06133.6 gi|345004702|ref|YP_004807555.1| - 2e-23 82.4 6.6 2.2e-23 82.3 4.6 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF964) YbaB_DNA_bd PF02575.11 gi|345004702|ref|YP_004807555.1| - 0.011 15.5 1.1 0.017 14.9 0.8 1.3 1 0 0 1 1 1 0 YbaB/EbfC DNA-binding family EzrA PF06160.7 gi|345004702|ref|YP_004807555.1| - 0.041 12.0 5.3 0.049 11.8 3.6 1.0 1 0 0 1 1 1 0 Septation ring formation regulator, EzrA DUF342 PF03961.8 gi|345004702|ref|YP_004807555.1| - 0.054 11.9 0.7 0.063 11.6 0.5 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF342) DUF3080 PF11279.3 gi|345004702|ref|YP_004807555.1| - 0.055 12.6 1.0 0.063 12.4 0.7 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3080) FTA4 PF13093.1 gi|345004702|ref|YP_004807555.1| - 0.11 11.9 2.7 0.12 11.8 1.9 1.1 1 0 0 1 1 1 0 Kinetochore complex Fta4 of Sim4 subunit, or CENP-50 CobU PF02283.11 gi|345004702|ref|YP_004807555.1| - 0.44 9.9 2.4 0.62 9.4 1.7 1.4 1 1 0 1 1 1 0 Cobinamide kinase / cobinamide phosphate guanyltransferase ING PF12998.2 gi|345004702|ref|YP_004807555.1| - 0.45 10.8 4.4 0.8 10.0 3.0 1.4 1 1 0 1 1 1 0 Inhibitor of growth proteins N-terminal histone-binding ATP-synt_DE PF00401.15 gi|345004702|ref|YP_004807555.1| - 1.3 9.0 11.1 0.28 11.1 0.6 2.5 2 1 0 2 2 2 0 ATP synthase, Delta/Epsilon chain, long alpha-helix domain OmpH PF03938.9 gi|345004702|ref|YP_004807555.1| - 4.9 7.0 9.5 7.9 6.4 6.6 1.3 1 0 0 1 1 1 0 Outer membrane protein (OmpH-like) Abhydrolase_2 PF02230.11 gi|345004704|ref|YP_004807557.1| - 4.7e-20 71.9 0.0 6e-20 71.6 0.0 1.1 1 0 0 1 1 1 1 Phospholipase/Carboxylesterase Abhydrolase_5 PF12695.2 gi|345004704|ref|YP_004807557.1| - 1.3e-11 44.4 0.2 2.1e-11 43.7 0.2 1.3 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_6 PF12697.2 gi|345004704|ref|YP_004807557.1| - 1.1e-09 38.5 4.3 6e-05 23.0 2.6 2.5 1 1 1 2 2 2 2 Alpha/beta hydrolase family DLH PF01738.13 gi|345004704|ref|YP_004807557.1| - 6.9e-07 28.7 0.0 9.1e-07 28.3 0.0 1.1 1 0 0 1 1 1 1 Dienelactone hydrolase family Peptidase_S9 PF00326.16 gi|345004704|ref|YP_004807557.1| - 8.9e-07 28.3 0.0 0.0079 15.4 0.0 2.3 1 1 1 2 2 2 2 Prolyl oligopeptidase family FSH1 PF03959.8 gi|345004704|ref|YP_004807557.1| - 7.8e-05 22.2 0.0 0.00018 21.0 0.0 1.6 1 1 0 1 1 1 1 Serine hydrolase (FSH1) Esterase PF00756.15 gi|345004704|ref|YP_004807557.1| - 0.0005 19.5 0.0 0.0015 17.9 0.0 1.9 1 1 0 1 1 1 1 Putative esterase Esterase_phd PF10503.4 gi|345004704|ref|YP_004807557.1| - 0.0015 17.8 0.1 0.002 17.4 0.0 1.3 1 0 0 1 1 1 1 Esterase PHB depolymerase LIP PF03583.9 gi|345004704|ref|YP_004807557.1| - 0.0015 17.7 0.0 0.037 13.2 0.0 2.1 2 0 0 2 2 2 1 Secretory lipase Abhydrolase_1 PF00561.15 gi|345004704|ref|YP_004807557.1| - 0.018 14.5 0.0 0.14 11.7 0.0 1.9 1 1 0 2 2 2 0 alpha/beta hydrolase fold tRNA-synt_1 PF00133.17 gi|345004705|ref|YP_004807558.1| - 2.1e-178 594.1 0.6 2.6e-178 593.8 0.4 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) tRNA-synt_1g PF09334.6 gi|345004705|ref|YP_004807558.1| - 1.3e-28 99.7 1.1 1.1e-11 44.1 0.0 3.9 3 1 0 3 3 3 3 tRNA synthetases class I (M) Anticodon_1 PF08264.8 gi|345004705|ref|YP_004807558.1| - 4.2e-26 91.5 0.1 8.2e-26 90.5 0.0 1.5 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1_2 PF13603.1 gi|345004705|ref|YP_004807558.1| - 8.8e-05 21.8 0.0 0.00019 20.7 0.0 1.5 1 0 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1e PF01406.14 gi|345004705|ref|YP_004807558.1| - 0.00011 21.4 0.0 0.00025 20.2 0.0 1.5 1 0 0 1 1 1 1 tRNA synthetases class I (C) catalytic domain tRNA-synt_1f PF01921.13 gi|345004705|ref|YP_004807558.1| - 0.0095 14.6 0.0 0.12 11.0 0.0 2.2 2 0 0 2 2 2 1 tRNA synthetases class I (K) DAO PF01266.19 gi|345004706|ref|YP_004807559.1| - 1.4e-59 201.8 9.1 1.7e-59 201.5 6.3 1.1 1 0 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox PF00070.22 gi|345004706|ref|YP_004807559.1| - 3.7e-06 27.2 2.2 0.00084 19.6 1.8 2.5 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|345004706|ref|YP_004807559.1| - 2.2e-05 24.6 0.3 0.039 14.0 0.1 2.3 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_2 PF07992.9 gi|345004706|ref|YP_004807559.1| - 9.8e-05 22.3 2.0 0.00065 19.6 1.4 2.2 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.1 gi|345004706|ref|YP_004807559.1| - 0.0001 22.2 1.5 0.0005 20.0 1.0 2.3 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.9 gi|345004706|ref|YP_004807559.1| - 0.00019 20.0 1.7 0.02 13.3 1.5 2.1 2 0 0 2 2 2 1 HI0933-like protein FAD_binding_3 PF01494.14 gi|345004706|ref|YP_004807559.1| - 0.00042 19.4 6.0 0.0017 17.4 4.2 1.9 1 1 0 1 1 1 1 FAD binding domain 3HCDH_N PF02737.13 gi|345004706|ref|YP_004807559.1| - 0.00079 19.1 0.3 0.0015 18.2 0.2 1.5 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_10 PF13460.1 gi|345004706|ref|YP_004807559.1| - 0.0011 19.0 9.0 0.15 12.0 1.7 2.2 2 0 0 2 2 2 2 NADH(P)-binding Thi4 PF01946.12 gi|345004706|ref|YP_004807559.1| - 0.0054 15.8 1.6 0.12 11.4 0.6 2.8 3 0 0 3 3 3 1 Thi4 family Amino_oxidase PF01593.19 gi|345004706|ref|YP_004807559.1| - 0.02 14.0 1.0 0.6 9.1 0.0 2.4 2 0 0 2 2 2 0 Flavin containing amine oxidoreductase NAD_Gly3P_dh_N PF01210.18 gi|345004706|ref|YP_004807559.1| - 0.047 13.4 0.7 0.31 10.7 0.7 2.0 2 0 0 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Lycopene_cycl PF05834.7 gi|345004706|ref|YP_004807559.1| - 0.064 12.1 2.8 1.5 7.6 0.9 2.3 2 0 0 2 2 2 0 Lycopene cyclase protein ApbA PF02558.11 gi|345004706|ref|YP_004807559.1| - 0.071 12.5 0.6 0.15 11.4 0.4 1.6 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA FAD_binding_2 PF00890.19 gi|345004706|ref|YP_004807559.1| - 0.35 9.6 7.8 3.1 6.5 5.4 2.4 1 1 0 1 1 1 0 FAD binding domain FAD_oxidored PF12831.2 gi|345004706|ref|YP_004807559.1| - 0.43 9.6 9.0 3.6 6.5 6.2 2.0 1 1 0 1 1 1 0 FAD dependent oxidoreductase GIDA PF01134.17 gi|345004706|ref|YP_004807559.1| - 0.67 8.7 4.7 1.3 7.8 2.3 1.9 2 0 0 2 2 2 0 Glucose inhibited division protein A RibD_C PF01872.12 gi|345004707|ref|YP_004807560.1| - 2.3e-50 170.9 0.3 2.6e-50 170.8 0.2 1.0 1 0 0 1 1 1 1 RibD C-terminal domain PEP-utilizers PF00391.18 gi|345004707|ref|YP_004807560.1| - 0.058 12.9 0.1 0.11 12.0 0.1 1.4 1 0 0 1 1 1 0 PEP-utilising enzyme, mobile domain DUF4350 PF14258.1 gi|345004707|ref|YP_004807560.1| - 0.14 12.3 3.0 1.7 8.8 0.1 3.3 3 1 0 3 3 3 0 Domain of unknown function (DUF4350) Inositol_P PF00459.20 gi|345004708|ref|YP_004807561.1| - 1e-47 162.7 1.8 1.2e-47 162.4 1.2 1.0 1 0 0 1 1 1 1 Inositol monophosphatase family tRNA_anti-codon PF01336.20 gi|345004709|ref|YP_004807562.1| - 2.4e-05 24.1 1.5 0.22 11.4 0.0 4.0 4 0 0 4 4 4 2 OB-fold nucleic acid binding domain Metallophos_2 PF12850.2 gi|345004711|ref|YP_004807564.1| - 1e-06 28.7 0.0 1.6e-06 28.0 0.0 1.3 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|345004711|ref|YP_004807564.1| - 2.3e-06 27.1 0.0 5.4e-06 25.9 0.0 1.6 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase DUF3493 PF11998.3 gi|345004712|ref|YP_004807565.1| - 2.6 8.0 4.5 0.36 10.7 0.3 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF3493) CytB6-F_Fe-S PF08802.5 gi|345004713|ref|YP_004807566.1| - 1 9.4 0.0 1 9.4 0.0 3.2 3 1 0 3 3 3 0 Cytochrome B6-F complex Fe-S subunit Hydrolase_3 PF08282.7 gi|345004715|ref|YP_004807568.1| - 1e-26 94.0 0.0 4.8e-17 62.3 0.0 2.0 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase S6PP PF05116.8 gi|345004715|ref|YP_004807568.1| - 3.1e-07 29.9 0.0 4.8e-06 26.0 0.0 2.1 2 0 0 2 2 2 1 Sucrose-6F-phosphate phosphohydrolase Hydrolase PF00702.21 gi|345004715|ref|YP_004807568.1| - 5.7e-05 23.6 2.0 0.003 18.0 0.3 3.0 1 1 1 2 2 2 1 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|345004715|ref|YP_004807568.1| - 0.00035 20.8 0.1 0.014 15.5 0.1 2.4 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Trehalose_PPase PF02358.11 gi|345004715|ref|YP_004807568.1| - 0.00074 18.5 0.0 0.0037 16.2 0.0 1.9 2 0 0 2 2 2 1 Trehalose-phosphatase HAD_2 PF13419.1 gi|345004715|ref|YP_004807568.1| - 0.002 18.3 0.1 0.021 15.0 0.1 2.3 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase BMC PF00936.14 gi|345004715|ref|YP_004807568.1| - 0.028 14.0 1.9 3.2 7.4 0.1 2.4 2 0 0 2 2 2 0 BMC domain NIL PF09383.5 gi|345004715|ref|YP_004807568.1| - 0.069 12.7 0.2 2.7 7.6 0.0 2.3 2 0 0 2 2 2 0 NIL domain DUF2608 PF11019.3 gi|345004715|ref|YP_004807568.1| - 0.19 10.7 0.0 0.48 9.3 0.0 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF2608) SQS_PSY PF00494.14 gi|345004717|ref|YP_004807570.1| - 1.7e-46 158.6 2.9 2.1e-46 158.3 2.0 1.1 1 0 0 1 1 1 1 Squalene/phytoene synthase TerB PF05099.8 gi|345004717|ref|YP_004807570.1| - 0.023 14.4 0.2 0.068 12.9 0.1 1.8 1 0 0 1 1 1 0 Tellurite resistance protein TerB Acyl-CoA_dh_C PF12806.2 gi|345004717|ref|YP_004807570.1| - 0.11 12.3 0.0 2.4 8.0 0.0 2.4 2 0 0 2 2 2 0 Acetyl-CoA dehydrogenase C-terminal like Acyl-CoA_dh_1 PF00441.19 gi|345004718|ref|YP_004807571.1| - 4.4e-50 169.6 0.9 1.3e-49 168.2 1.0 1.5 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.11 gi|345004718|ref|YP_004807571.1| - 8.8e-34 116.4 0.1 2.7e-33 114.8 0.1 1.8 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_2 PF08028.6 gi|345004718|ref|YP_004807571.1| - 7.8e-24 84.4 0.9 1.5e-23 83.5 0.6 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_M PF02770.14 gi|345004718|ref|YP_004807571.1| - 6.8e-19 67.1 0.7 1.5e-18 66.0 0.5 1.6 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain MS_channel PF00924.13 gi|345004719|ref|YP_004807572.1| - 1.3e-54 184.6 0.0 1.3e-54 184.6 0.0 2.0 2 0 0 2 2 2 1 Mechanosensitive ion channel CopD PF05425.8 gi|345004719|ref|YP_004807572.1| - 7.3 6.8 15.7 0.2 11.8 5.4 2.0 1 1 1 2 2 2 0 Copper resistance protein D CRS1_YhbY PF01985.16 gi|345004720|ref|YP_004807573.1| - 2.9e-21 75.2 0.9 3.1e-21 75.1 0.6 1.0 1 0 0 1 1 1 1 CRS1 / YhbY (CRM) domain Rpr2 PF04032.11 gi|345004721|ref|YP_004807574.1| - 1.4e-13 50.4 0.0 1.6e-13 50.2 0.0 1.0 1 0 0 1 1 1 1 RNAse P Rpr2/Rpp21/SNM1 subunit domain Glycos_transf_1 PF00534.15 gi|345004722|ref|YP_004807575.1| - 1.1e-20 73.7 0.0 9.4e-18 64.2 0.0 2.2 2 0 0 2 2 2 2 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|345004722|ref|YP_004807575.1| - 3.3e-15 56.4 0.0 2.9e-13 50.1 0.0 2.3 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|345004722|ref|YP_004807575.1| - 1.7e-13 50.6 0.2 3.1e-13 49.8 0.2 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|345004722|ref|YP_004807575.1| - 1.6e-10 41.3 1.7 3.8e-10 40.1 1.2 1.6 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.1 gi|345004722|ref|YP_004807575.1| - 5.8e-08 32.6 0.0 1.6e-07 31.2 0.0 1.7 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Glycos_transf_1 PF00534.15 gi|345004723|ref|YP_004807576.1| - 2.6e-29 101.8 0.0 1.8e-28 99.0 0.0 2.0 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|345004723|ref|YP_004807576.1| - 3.9e-18 66.1 4.1 6.1e-17 62.2 0.9 2.4 2 1 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_trans_1_4 PF13692.1 gi|345004723|ref|YP_004807576.1| - 5.2e-16 59.0 0.1 2.2e-15 56.9 0.0 2.1 2 1 0 3 3 3 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|345004723|ref|YP_004807576.1| - 2e-13 50.4 0.0 3.5e-13 49.6 0.0 1.4 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.1 gi|345004723|ref|YP_004807576.1| - 1.9e-05 24.8 0.0 4e-05 23.8 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.1 gi|345004723|ref|YP_004807576.1| - 0.00023 21.0 0.0 0.00041 20.1 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase 4-like DUF1918 PF08940.6 gi|345004724|ref|YP_004807577.1| - 0.017 14.4 0.1 0.024 13.9 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1918) Nucleoplasmin PF03066.10 gi|345004724|ref|YP_004807577.1| - 4.1 6.9 7.7 4.6 6.7 5.3 1.1 1 0 0 1 1 1 0 Nucleoplasmin RNA_binding PF01877.12 gi|345004725|ref|YP_004807578.1| - 5.3e-30 103.8 0.1 7.6e-30 103.3 0.1 1.3 1 0 0 1 1 1 1 RNA binding DUF3964 PF13107.1 gi|345004725|ref|YP_004807578.1| - 0.055 13.7 0.0 0.099 12.8 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3964) RraB PF06877.6 gi|345004725|ref|YP_004807578.1| - 0.1 13.2 0.0 0.19 12.3 0.0 1.4 1 0 0 1 1 1 0 Regulator of ribonuclease activity B AhpC-TSA PF00578.16 gi|345004726|ref|YP_004807579.1| - 1.2e-16 60.4 0.0 1.7e-16 60.0 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.5 gi|345004726|ref|YP_004807579.1| - 9.5e-12 44.6 0.0 1.2e-11 44.3 0.0 1.1 1 0 0 1 1 1 1 Redoxin Thioredoxin_8 PF13905.1 gi|345004726|ref|YP_004807579.1| - 0.0058 16.7 0.0 0.0077 16.3 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin-like Thioredoxin_2 PF13098.1 gi|345004726|ref|YP_004807579.1| - 0.017 15.3 0.0 0.025 14.7 0.0 1.2 1 0 0 1 1 1 0 Thioredoxin-like domain GSHPx PF00255.14 gi|345004726|ref|YP_004807579.1| - 0.035 13.4 0.0 0.049 13.0 0.0 1.2 1 0 0 1 1 1 0 Glutathione peroxidase T4_deiodinase PF00837.12 gi|345004726|ref|YP_004807579.1| - 0.055 12.4 0.0 0.074 12.0 0.0 1.2 1 0 0 1 1 1 0 Iodothyronine deiodinase TatD_DNase PF01026.16 gi|345004726|ref|YP_004807579.1| - 0.074 12.2 0.0 0.095 11.8 0.0 1.1 1 0 0 1 1 1 0 TatD related DNase Acyl-CoA_dh_1 PF00441.19 gi|345004727|ref|YP_004807580.1| - 6.3e-53 178.9 2.3 9.4e-53 178.3 1.6 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.11 gi|345004727|ref|YP_004807580.1| - 3.9e-32 111.1 1.6 1.1e-31 109.7 0.1 2.4 3 0 0 3 3 3 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_2 PF08028.6 gi|345004727|ref|YP_004807580.1| - 2.3e-22 79.6 5.0 3.5e-22 79.0 3.5 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_M PF02770.14 gi|345004727|ref|YP_004807580.1| - 4.4e-21 74.1 0.2 8.5e-21 73.2 0.1 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain SnoaL_3 PF13474.1 gi|345004727|ref|YP_004807580.1| - 0.088 12.8 0.2 0.62 10.1 0.1 2.2 1 1 1 2 2 2 0 SnoaL-like domain DDE_Tnp_IS66 PF03050.9 gi|345004729|ref|YP_004807582.1| - 8.4e-53 179.3 0.1 8.4e-53 179.3 0.1 2.3 2 1 1 3 3 3 1 Transposase IS66 family DUF904 PF06005.7 gi|345004729|ref|YP_004807582.1| - 2.7e-10 40.3 5.7 9e-10 38.7 3.9 1.9 1 0 0 1 1 1 1 Protein of unknown function (DUF904) DUF972 PF06156.8 gi|345004729|ref|YP_004807582.1| - 0.00018 21.8 4.6 0.00052 20.3 3.2 1.7 1 0 0 1 1 1 1 Protein of unknown function (DUF972) CASP_C PF08172.7 gi|345004729|ref|YP_004807582.1| - 0.00025 20.1 2.2 0.00042 19.4 1.5 1.2 1 0 0 1 1 1 1 CASP C terminal bZIP_1 PF00170.16 gi|345004729|ref|YP_004807582.1| - 0.0021 17.9 7.9 0.0043 16.9 5.5 1.5 1 0 0 1 1 1 1 bZIP transcription factor SPX PF03105.14 gi|345004729|ref|YP_004807582.1| - 0.0024 17.7 0.1 0.0035 17.1 0.1 1.2 1 0 0 1 1 1 1 SPX domain Striatin PF08232.7 gi|345004729|ref|YP_004807582.1| - 0.0024 18.1 4.3 0.0051 17.1 3.0 1.5 1 0 0 1 1 1 1 Striatin family Tektin PF03148.9 gi|345004729|ref|YP_004807582.1| - 0.0041 15.7 2.6 0.0067 15.0 1.8 1.2 1 0 0 1 1 1 1 Tektin family DDE_Tnp_IS240 PF13610.1 gi|345004729|ref|YP_004807582.1| - 0.0083 16.1 0.7 0.018 15.0 0.0 1.9 2 1 0 2 2 1 1 DDE domain HOOK PF05622.7 gi|345004729|ref|YP_004807582.1| - 0.011 13.5 2.2 0.016 13.0 1.6 1.1 1 0 0 1 1 1 0 HOOK protein zf-IS66 PF13005.2 gi|345004729|ref|YP_004807582.1| - 0.017 15.1 8.8 0.047 13.6 6.1 1.8 1 1 0 1 1 1 0 zinc-finger binding domain of transposase IS66 HALZ PF02183.13 gi|345004729|ref|YP_004807582.1| - 0.033 13.8 5.2 0.094 12.4 3.6 1.8 1 0 0 1 1 1 0 Homeobox associated leucine zipper FlaC_arch PF05377.6 gi|345004729|ref|YP_004807582.1| - 0.035 13.9 2.8 0.079 12.8 2.0 1.6 1 0 0 1 1 1 0 Flagella accessory protein C (FlaC) ERM PF00769.14 gi|345004729|ref|YP_004807582.1| - 0.049 13.1 6.2 0.11 11.9 4.3 1.5 1 0 0 1 1 1 0 Ezrin/radixin/moesin family Fmp27_WPPW PF10359.4 gi|345004729|ref|YP_004807582.1| - 0.057 11.8 1.7 0.078 11.3 1.2 1.1 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain IncA PF04156.9 gi|345004729|ref|YP_004807582.1| - 0.059 12.9 6.1 0.12 11.9 4.2 1.5 1 0 0 1 1 1 0 IncA protein GAS PF13851.1 gi|345004729|ref|YP_004807582.1| - 0.071 12.3 5.1 0.13 11.4 3.5 1.3 1 0 0 1 1 1 0 Growth-arrest specific micro-tubule binding V_ATPase_I PF01496.14 gi|345004729|ref|YP_004807582.1| - 0.081 10.7 2.2 0.1 10.4 1.5 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family DUF1875 PF08961.5 gi|345004729|ref|YP_004807582.1| - 0.099 11.9 3.5 0.17 11.1 2.4 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1875) SpoVR PF04293.8 gi|345004729|ref|YP_004807582.1| - 0.12 10.7 4.7 0.18 10.1 3.2 1.2 1 0 0 1 1 1 0 SpoVR like protein NUDE_C PF04880.8 gi|345004729|ref|YP_004807582.1| - 0.16 12.3 3.2 0.3 11.4 2.2 1.4 1 0 0 1 1 1 0 NUDE protein, C-terminal conserved region TMF_DNA_bd PF12329.3 gi|345004729|ref|YP_004807582.1| - 0.19 11.5 8.9 0.46 10.3 6.2 1.5 1 0 0 1 1 1 0 TATA element modulatory factor 1 DNA binding Shugoshin_N PF07558.6 gi|345004729|ref|YP_004807582.1| - 0.33 10.7 5.9 0.15 11.8 1.9 2.0 1 1 0 1 1 1 0 Shugoshin N-terminal coiled-coil region Atg14 PF10186.4 gi|345004729|ref|YP_004807582.1| - 0.36 9.7 3.5 0.66 8.8 2.5 1.4 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 DivIC PF04977.10 gi|345004729|ref|YP_004807582.1| - 0.36 10.3 8.3 0.86 9.1 5.4 1.8 1 1 0 1 1 1 0 Septum formation initiator Daxx PF03344.10 gi|345004729|ref|YP_004807582.1| - 0.4 9.1 6.8 0.6 8.5 4.7 1.2 1 0 0 1 1 1 0 Daxx Family Sipho_Gp157 PF05565.6 gi|345004729|ref|YP_004807582.1| - 0.45 10.0 3.1 0.72 9.4 2.1 1.2 1 0 0 1 1 1 0 Siphovirus Gp157 Synaptobrevin PF00957.16 gi|345004729|ref|YP_004807582.1| - 0.46 10.1 2.2 0.84 9.2 1.5 1.3 1 0 0 1 1 1 0 Synaptobrevin ADIP PF11559.3 gi|345004729|ref|YP_004807582.1| - 0.56 10.0 7.1 1.2 9.0 4.9 1.5 1 0 0 1 1 1 0 Afadin- and alpha -actinin-Binding DUF2205 PF10224.4 gi|345004729|ref|YP_004807582.1| - 0.6 9.7 6.0 1.2 8.7 4.2 1.4 1 0 0 1 1 1 0 Predicted coiled-coil protein (DUF2205) TBPIP PF07106.8 gi|345004729|ref|YP_004807582.1| - 0.73 9.3 5.0 0.41 10.1 2.0 1.7 2 0 0 2 2 1 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) EMP24_GP25L PF01105.19 gi|345004729|ref|YP_004807582.1| - 0.82 9.3 6.0 6.1 6.5 2.9 2.1 2 0 0 2 2 2 0 emp24/gp25L/p24 family/GOLD Prefoldin_2 PF01920.15 gi|345004729|ref|YP_004807582.1| - 0.85 9.4 8.1 1.6 8.4 5.6 1.4 1 0 0 1 1 1 0 Prefoldin subunit bZIP_2 PF07716.10 gi|345004729|ref|YP_004807582.1| - 0.86 9.4 14.5 0.8 9.5 6.4 2.6 1 1 1 2 2 2 0 Basic region leucine zipper APG6 PF04111.7 gi|345004729|ref|YP_004807582.1| - 2.2 7.2 7.1 3.5 6.5 4.9 1.2 1 0 0 1 1 1 0 Autophagy protein Apg6 NYD-SP28_assoc PF14775.1 gi|345004729|ref|YP_004807582.1| - 3.1 7.5 9.2 5.8 6.6 5.2 2.3 1 1 1 2 2 2 0 Sperm tail C-terminal domain TSC22 PF01166.13 gi|345004729|ref|YP_004807582.1| - 3.5 7.6 14.5 28 4.7 8.0 3.2 2 1 0 2 2 2 0 TSC-22/dip/bun family DAO PF01266.19 gi|345004730|ref|YP_004807583.1| - 1.2e-83 281.0 3.0 1.3e-83 280.8 2.1 1.0 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|345004730|ref|YP_004807583.1| - 3.4e-12 45.9 5.8 8.9e-12 44.5 4.0 1.6 1 1 0 1 1 1 1 FAD binding domain Pyr_redox_2 PF07992.9 gi|345004730|ref|YP_004807583.1| - 2.4e-08 34.0 0.1 0.00054 19.9 0.1 2.2 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|345004730|ref|YP_004807583.1| - 4.6e-07 30.1 3.2 0.00063 20.0 1.8 2.5 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.1 gi|345004730|ref|YP_004807583.1| - 1.3e-06 28.3 0.8 3.8e-06 26.8 0.5 1.9 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.9 gi|345004730|ref|YP_004807583.1| - 2.5e-05 22.9 1.4 0.016 13.6 1.0 2.1 2 0 0 2 2 2 2 HI0933-like protein Thi4 PF01946.12 gi|345004730|ref|YP_004807583.1| - 0.00011 21.3 1.4 0.00035 19.7 0.7 1.9 2 0 0 2 2 2 1 Thi4 family FAD_binding_3 PF01494.14 gi|345004730|ref|YP_004807583.1| - 0.00013 21.1 3.9 0.00067 18.8 2.1 2.1 2 0 0 2 2 2 1 FAD binding domain FAD_oxidored PF12831.2 gi|345004730|ref|YP_004807583.1| - 0.00014 21.1 5.2 0.0007 18.7 3.6 1.9 1 1 0 1 1 1 1 FAD dependent oxidoreductase GIDA PF01134.17 gi|345004730|ref|YP_004807583.1| - 0.00017 20.5 0.9 0.0031 16.4 0.8 2.0 2 0 0 2 2 2 1 Glucose inhibited division protein A Pyr_redox_3 PF13738.1 gi|345004730|ref|YP_004807583.1| - 0.0022 18.1 0.6 0.011 15.8 0.4 2.1 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_7 PF13241.1 gi|345004730|ref|YP_004807583.1| - 0.004 17.3 0.1 0.0064 16.7 0.1 1.5 1 0 0 1 1 1 1 Putative NAD(P)-binding UDPG_MGDP_dh_N PF03721.9 gi|345004730|ref|YP_004807583.1| - 0.0043 16.4 1.4 0.0073 15.7 1.0 1.3 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 3HCDH_N PF02737.13 gi|345004730|ref|YP_004807583.1| - 0.011 15.4 1.9 0.012 15.2 0.3 1.8 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Amino_oxidase PF01593.19 gi|345004730|ref|YP_004807583.1| - 0.023 13.7 0.4 0.71 8.8 0.0 2.1 2 0 0 2 2 2 0 Flavin containing amine oxidoreductase Ketoacyl-synt_C PF02801.17 gi|345004730|ref|YP_004807583.1| - 0.099 12.4 0.7 2.8 7.8 0.0 2.2 2 0 0 2 2 2 0 Beta-ketoacyl synthase, C-terminal domain AlaDh_PNT_C PF01262.16 gi|345004730|ref|YP_004807583.1| - 0.14 11.6 1.4 0.34 10.4 0.9 1.6 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Trp_halogenase PF04820.9 gi|345004730|ref|YP_004807583.1| - 0.64 8.5 2.1 0.78 8.2 0.6 1.7 2 0 0 2 2 2 0 Tryptophan halogenase OCD_Mu_crystall PF02423.10 gi|345004731|ref|YP_004807584.1| - 6.5e-60 202.5 4.3 7.4e-60 202.3 3.0 1.0 1 0 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family GFO_IDH_MocA PF01408.17 gi|345004731|ref|YP_004807584.1| - 0.00035 21.0 0.1 0.00078 19.9 0.1 1.6 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold Shikimate_DH PF01488.15 gi|345004731|ref|YP_004807584.1| - 0.0019 18.3 0.0 0.0038 17.3 0.0 1.5 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase Semialdhyde_dh PF01118.19 gi|345004731|ref|YP_004807584.1| - 0.059 13.6 0.0 0.11 12.8 0.0 1.5 1 0 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain Metal_resist PF13801.1 gi|345004731|ref|YP_004807584.1| - 0.087 12.8 4.9 0.13 12.2 0.3 2.7 3 0 0 3 3 3 0 Heavy-metal resistance HalX PF08663.5 gi|345004732|ref|YP_004807585.1| - 1.4e-21 76.2 5.7 4.3e-21 74.6 4.0 1.9 1 0 0 1 1 1 1 HalX domain Response_reg PF00072.19 gi|345004732|ref|YP_004807585.1| - 3.4e-18 65.6 0.1 5.8e-18 64.9 0.1 1.4 1 0 0 1 1 1 1 Response regulator receiver domain Nbl1_Borealin_N PF10444.4 gi|345004732|ref|YP_004807585.1| - 0.016 14.5 1.0 0.079 12.3 0.0 2.2 2 0 0 2 2 2 0 Nbl1 / Borealin N terminal SPX PF03105.14 gi|345004732|ref|YP_004807585.1| - 0.02 14.6 1.0 0.025 14.3 0.7 1.1 1 0 0 1 1 1 0 SPX domain Bud13 PF09736.4 gi|345004732|ref|YP_004807585.1| - 0.031 14.5 0.2 0.04 14.1 0.1 1.2 1 0 0 1 1 1 0 Pre-mRNA-splicing factor of RES complex Unstab_antitox PF09720.5 gi|345004732|ref|YP_004807585.1| - 0.04 13.6 1.9 0.1 12.3 1.3 1.7 1 0 0 1 1 1 0 Putative addiction module component DUF3618 PF12277.3 gi|345004732|ref|YP_004807585.1| - 0.47 10.5 8.3 0.093 12.7 1.7 2.6 3 0 0 3 3 3 0 Protein of unknown function (DUF3618) IMPDH PF00478.20 gi|345004733|ref|YP_004807586.1| - 3.1e-126 420.9 9.9 3.6e-126 420.8 6.9 1.0 1 0 0 1 1 1 1 IMP dehydrogenase / GMP reductase domain CBS PF00571.23 gi|345004733|ref|YP_004807586.1| - 1.7e-26 91.7 1.6 4.2e-12 45.6 0.1 2.9 2 0 0 2 2 2 2 CBS domain NMO PF03060.10 gi|345004733|ref|YP_004807586.1| - 1.2e-13 50.8 5.7 5.4e-07 29.0 1.9 2.3 2 0 0 2 2 2 2 Nitronate monooxygenase FMN_dh PF01070.13 gi|345004733|ref|YP_004807586.1| - 3.2e-09 36.1 5.8 5.7e-09 35.2 4.0 1.4 1 0 0 1 1 1 1 FMN-dependent dehydrogenase ThiG PF05690.9 gi|345004733|ref|YP_004807586.1| - 7.9e-05 21.8 1.2 7.9e-05 21.8 0.8 2.4 2 0 0 2 2 2 1 Thiazole biosynthesis protein ThiG Glu_synthase PF01645.12 gi|345004733|ref|YP_004807586.1| - 8e-05 21.7 5.3 0.00015 20.8 3.7 1.4 1 0 0 1 1 1 1 Conserved region in glutamate synthase DHO_dh PF01180.16 gi|345004733|ref|YP_004807586.1| - 0.00012 21.1 2.1 0.00018 20.5 0.6 1.8 2 0 0 2 2 2 1 Dihydroorotate dehydrogenase His_biosynth PF00977.16 gi|345004733|ref|YP_004807586.1| - 0.00029 20.1 0.7 0.0012 18.1 0.1 2.1 1 1 1 2 2 2 1 Histidine biosynthesis protein Dus PF01207.12 gi|345004733|ref|YP_004807586.1| - 0.00085 18.2 0.1 0.0016 17.3 0.1 1.4 1 0 0 1 1 1 1 Dihydrouridine synthase (Dus) PcrB PF01884.12 gi|345004733|ref|YP_004807586.1| - 0.014 14.6 1.7 0.027 13.7 0.3 2.1 2 0 0 2 2 2 0 PcrB family Methyltransf_24 PF13578.1 gi|345004733|ref|YP_004807586.1| - 0.077 13.8 0.1 0.18 12.6 0.0 1.6 1 0 0 1 1 1 0 Methyltransferase domain HTH_20 PF12840.2 gi|345004735|ref|YP_004807588.1| - 4.4e-12 45.6 0.3 8.4e-12 44.7 0.2 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|345004735|ref|YP_004807588.1| - 5e-05 22.8 0.6 0.00018 21.1 0.0 2.0 2 0 0 2 2 2 1 MarR family HTH_24 PF13412.1 gi|345004735|ref|YP_004807588.1| - 0.00019 20.7 0.0 0.00031 20.0 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.15 gi|345004735|ref|YP_004807588.1| - 0.009 15.6 0.0 0.014 15.0 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family DUF202 PF02656.10 gi|345004735|ref|YP_004807588.1| - 0.086 13.0 0.5 0.17 12.1 0.3 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF202) DUF2513 PF10711.4 gi|345004735|ref|YP_004807588.1| - 0.091 12.8 0.0 0.15 12.2 0.0 1.3 1 0 0 1 1 1 0 Hypothetical protein (DUF2513) TrmB PF01978.14 gi|345004735|ref|YP_004807588.1| - 0.1 12.2 0.0 0.24 11.1 0.0 1.6 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB DUF4147 PF13660.1 gi|345004736|ref|YP_004807589.1| - 4.7e-79 264.8 3.9 7.8e-79 264.1 2.7 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4147) MOFRL PF05161.8 gi|345004736|ref|YP_004807589.1| - 1.1e-24 86.5 2.8 4.5e-23 81.4 0.3 2.6 2 0 0 2 2 2 2 MOFRL family TraB PF01963.12 gi|345004737|ref|YP_004807590.1| - 3e-36 125.1 0.1 2.4e-18 66.5 0.0 2.2 2 0 0 2 2 2 2 TraB family Hydrolase PF00702.21 gi|345004737|ref|YP_004807590.1| - 0.016 15.5 0.1 0.042 14.2 0.0 1.6 2 0 0 2 2 2 0 haloacid dehalogenase-like hydrolase DUF399 PF04187.8 gi|345004737|ref|YP_004807590.1| - 0.066 12.6 0.0 0.13 11.7 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function, DUF399 Peptidase_M50 PF02163.17 gi|345004738|ref|YP_004807591.1| - 4e-08 32.4 18.5 4e-08 32.4 12.8 3.0 2 1 0 2 2 2 1 Peptidase family M50 AIRS_C PF02769.17 gi|345004739|ref|YP_004807592.1| - 8.5e-18 64.8 0.0 1.4e-17 64.0 0.0 1.4 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.19 gi|345004739|ref|YP_004807592.1| - 3.3e-16 59.3 3.1 3.3e-16 59.2 0.9 2.0 2 0 0 2 2 2 1 AIR synthase related protein, N-terminal domain RRM_1 PF00076.17 gi|345004739|ref|YP_004807592.1| - 0.015 14.9 0.0 0.039 13.5 0.0 1.7 2 0 0 2 2 2 0 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) DSBA PF01323.15 gi|345004740|ref|YP_004807593.1| - 4.1e-20 72.1 0.0 4.9e-20 71.9 0.0 1.0 1 0 0 1 1 1 1 DSBA-like thioredoxin domain Thioredoxin_4 PF13462.1 gi|345004740|ref|YP_004807593.1| - 4.7e-08 33.2 0.1 1.2e-05 25.3 0.0 2.1 2 0 0 2 2 2 2 Thioredoxin CBS PF00571.23 gi|345004741|ref|YP_004807594.1| - 2.7e-24 84.6 0.8 1.3e-12 47.2 0.0 2.4 2 0 0 2 2 2 2 CBS domain HTH_31 PF13560.1 gi|345004741|ref|YP_004807594.1| - 3.9e-13 49.3 2.6 3.9e-13 49.3 1.8 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_3 PF01381.17 gi|345004741|ref|YP_004807594.1| - 3e-10 39.7 0.0 5.2e-10 39.0 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.2 gi|345004741|ref|YP_004807594.1| - 4.9e-08 32.9 0.0 1e-07 31.8 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_25 PF13413.1 gi|345004741|ref|YP_004807594.1| - 0.00065 19.2 0.2 0.0012 18.4 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_37 PF13744.1 gi|345004741|ref|YP_004807594.1| - 0.00098 18.8 0.0 0.0023 17.7 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_26 PF13443.1 gi|345004741|ref|YP_004807594.1| - 0.003 17.7 0.0 0.0055 16.8 0.0 1.4 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain PQQ_2 PF13360.1 gi|345004742|ref|YP_004807595.1| - 1.3e-18 67.3 11.5 9.9e-14 51.3 3.2 3.1 1 1 3 4 4 4 4 PQQ-like domain PQQ PF01011.16 gi|345004742|ref|YP_004807595.1| - 2.6e-12 45.6 3.3 0.011 15.2 0.0 5.9 6 1 0 6 6 6 3 PQQ enzyme repeat VCBS PF13517.1 gi|345004742|ref|YP_004807595.1| - 7.9e-09 35.7 17.5 1.5e-05 25.2 1.8 4.8 2 1 2 4 4 4 3 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella PQQ_3 PF13570.1 gi|345004742|ref|YP_004807595.1| - 1.2e-08 34.8 17.7 0.022 15.0 0.0 7.1 7 0 0 7 7 7 3 PQQ-like domain FG-GAP PF01839.18 gi|345004742|ref|YP_004807595.1| - 1e-07 31.3 15.7 0.012 15.3 0.0 5.0 4 0 0 4 4 4 3 FG-GAP repeat BBS2_Mid PF14783.1 gi|345004742|ref|YP_004807595.1| - 6.3e-06 25.9 0.2 0.015 15.0 0.0 3.9 3 1 1 5 5 5 1 Ciliary BBSome complex subunit 2, middle region DUF555 PF04475.7 gi|345004743|ref|YP_004807596.1| - 1.8e-46 156.3 0.1 2.1e-46 156.1 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF555) GGDN PF05165.7 gi|345004744|ref|YP_004807597.1| - 3.5e-87 291.5 0.0 4.5e-87 291.1 0.0 1.0 1 0 0 1 1 1 1 GGDN family DUF4112 PF13430.1 gi|345004746|ref|YP_004807599.1| - 2.4e-30 104.5 0.1 2.8e-30 104.3 0.1 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4112) SurE PF01975.12 gi|345004747|ref|YP_004807600.1| - 2.5e-44 150.9 0.1 3.3e-44 150.5 0.0 1.1 1 0 0 1 1 1 1 Survival protein SurE IF-2B PF01008.12 gi|345004747|ref|YP_004807600.1| - 0.11 11.5 0.2 0.14 11.0 0.1 1.2 1 0 0 1 1 1 0 Initiation factor 2 subunit family DUF4112 PF13430.1 gi|345004748|ref|YP_004807601.1| - 5.8e-32 109.7 0.3 6.5e-32 109.6 0.2 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4112) UPF0058 PF01893.11 gi|345004749|ref|YP_004807602.1| - 2.1e-33 114.1 0.6 2.4e-33 114.0 0.4 1.0 1 0 0 1 1 1 1 Uncharacterised protein family UPF0058 DUF2580 PF10824.3 gi|345004749|ref|YP_004807602.1| - 0.023 15.0 0.1 0.032 14.5 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2580) UBA PF00627.26 gi|345004750|ref|YP_004807603.1| - 0.13 12.1 0.1 0.18 11.6 0.1 1.3 1 0 0 1 1 1 0 UBA/TS-N domain Amidase PF01425.16 gi|345004751|ref|YP_004807604.1| - 2.5e-71 240.8 1.6 6.1e-71 239.5 1.1 1.6 1 1 0 1 1 1 1 Amidase Oxidored_molyb PF00174.14 gi|345004752|ref|YP_004807605.1| - 4.5e-40 136.8 0.0 5.4e-40 136.5 0.0 1.0 1 0 0 1 1 1 1 Oxidoreductase molybdopterin binding domain Chorismate_bind PF00425.13 gi|345004753|ref|YP_004807606.1| - 3.2e-69 233.1 0.0 4.1e-69 232.7 0.0 1.1 1 0 0 1 1 1 1 chorismate binding enzyme TPP_enzyme_N PF02776.13 gi|345004754|ref|YP_004807607.1| - 1.6e-32 112.3 0.2 4.6e-32 110.8 0.1 1.8 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.16 gi|345004754|ref|YP_004807607.1| - 7.3e-09 35.3 0.0 1.7e-08 34.1 0.0 1.6 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ECH PF00378.15 gi|345004755|ref|YP_004807608.1| - 1.3e-44 152.2 0.0 8.1e-44 149.5 0.0 1.8 1 1 0 1 1 1 1 Enoyl-CoA hydratase/isomerase family NUDIX PF00293.23 gi|345004756|ref|YP_004807609.1| - 3.1e-11 43.0 0.8 6e-11 42.1 0.3 1.6 1 1 1 2 2 2 1 NUDIX domain VDE PF07137.6 gi|345004756|ref|YP_004807609.1| - 0.0082 16.0 0.0 0.011 15.5 0.0 1.2 1 0 0 1 1 1 1 Violaxanthin de-epoxidase (VDE) UbiA PF01040.13 gi|345004757|ref|YP_004807610.1| - 2.3e-38 131.8 21.4 2.8e-38 131.6 14.8 1.1 1 0 0 1 1 1 1 UbiA prenyltransferase family MR_MLE_C PF13378.1 gi|345004758|ref|YP_004807611.1| - 6.8e-15 55.0 0.8 1.6e-14 53.8 0.6 1.6 1 0 0 1 1 1 1 Enolase C-terminal domain-like MR_MLE PF01188.16 gi|345004758|ref|YP_004807611.1| - 2.7e-11 43.8 0.6 2.7e-11 43.8 0.4 2.4 3 0 0 3 3 3 1 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain ECH PF00378.15 gi|345004759|ref|YP_004807612.1| - 2.1e-49 167.8 0.0 2.4e-49 167.7 0.0 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase family ECH_C PF13766.1 gi|345004759|ref|YP_004807612.1| - 0.0012 18.9 0.1 0.0024 18.0 0.1 1.4 1 0 0 1 1 1 1 2-enoyl-CoA Hydratase C-terminal region Na_H_antiporter PF03553.9 gi|345004760|ref|YP_004807613.1| - 2.2e-55 187.8 35.3 2.4e-53 181.1 10.6 2.0 1 1 1 2 2 2 2 Na+/H+ antiporter family Cys_Met_Meta_PP PF01053.15 gi|345004761|ref|YP_004807614.1| - 2.1e-125 418.0 0.0 2.3e-125 417.8 0.0 1.0 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_5 PF00266.14 gi|345004761|ref|YP_004807614.1| - 0.00056 18.7 0.2 0.0011 17.7 0.1 1.4 1 0 0 1 1 1 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.12 gi|345004761|ref|YP_004807614.1| - 0.0064 15.5 4.1 0.0071 15.4 1.7 1.7 2 0 0 2 2 2 1 DegT/DnrJ/EryC1/StrS aminotransferase family DUF4350 PF14258.1 gi|345004761|ref|YP_004807614.1| - 0.027 14.6 0.2 1.5 9.0 0.0 3.3 3 0 0 3 3 3 0 Domain of unknown function (DUF4350) Abhydrolase_1 PF00561.15 gi|345004762|ref|YP_004807615.1| - 4.9e-20 72.0 0.4 7.6e-20 71.4 0.3 1.3 1 0 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_6 PF12697.2 gi|345004762|ref|YP_004807615.1| - 5e-13 49.4 6.5 7.4e-13 48.9 4.5 1.2 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_4 PF08386.5 gi|345004762|ref|YP_004807615.1| - 0.038 13.8 0.2 0.1 12.4 0.0 1.8 2 0 0 2 2 2 0 TAP-like protein TetR_N PF00440.18 gi|345004763|ref|YP_004807616.1| - 8.3e-11 41.3 0.1 1.8e-10 40.3 0.1 1.6 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family TetR_C_6 PF13977.1 gi|345004763|ref|YP_004807616.1| - 5.3e-10 39.3 2.8 8.7e-10 38.6 0.3 2.3 1 1 0 3 3 3 1 Bacterial transcriptional repressor MatE PF01554.13 gi|345004764|ref|YP_004807617.1| - 2e-62 209.5 35.0 3.5e-36 124.2 9.6 2.5 3 0 0 3 3 3 2 MatE Polysacc_synt_C PF14667.1 gi|345004764|ref|YP_004807617.1| - 1.1e-06 28.5 37.5 0.00029 20.6 11.6 4.5 4 1 0 4 4 4 3 Polysaccharide biosynthesis C-terminal domain HTH_34 PF13601.1 gi|345004765|ref|YP_004807618.1| - 0.00088 19.2 0.0 0.0012 18.8 0.0 1.1 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR PF01047.17 gi|345004765|ref|YP_004807618.1| - 0.0027 17.3 0.0 0.0039 16.8 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.1 gi|345004765|ref|YP_004807618.1| - 0.006 16.8 0.0 0.0074 16.5 0.0 1.1 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_20 PF12840.2 gi|345004765|ref|YP_004807618.1| - 0.081 12.7 0.0 0.11 12.3 0.0 1.1 1 0 0 1 1 1 0 Helix-turn-helix domain TrmB PF01978.14 gi|345004765|ref|YP_004807618.1| - 0.11 12.1 0.1 0.15 11.7 0.0 1.1 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB DUF502 PF04367.8 gi|345004766|ref|YP_004807619.1| - 5.6e-27 93.6 0.2 5.6e-27 93.6 0.1 1.7 2 0 0 2 2 2 1 Protein of unknown function (DUF502) MMPL PF03176.10 gi|345004767|ref|YP_004807620.1| - 2.6e-44 151.3 30.2 1.3e-25 89.7 10.8 2.5 2 0 0 2 2 2 2 MMPL family Sterol-sensing PF12349.3 gi|345004767|ref|YP_004807620.1| - 3.2e-15 55.9 10.5 1.6e-09 37.4 1.1 2.7 2 0 0 2 2 2 2 Sterol-sensing domain of SREBP cleavage-activation Patched PF02460.13 gi|345004767|ref|YP_004807620.1| - 4.5e-13 48.0 19.7 4.9e-08 31.4 5.0 2.1 2 0 0 2 2 2 2 Patched family SecD_SecF PF02355.11 gi|345004767|ref|YP_004807620.1| - 0.00061 19.0 23.9 0.0037 16.4 4.1 2.5 2 0 0 2 2 2 2 Protein export membrane protein ThiS PF02597.15 gi|345004768|ref|YP_004807621.1| - 3.9e-07 30.3 0.0 2.2e-06 27.9 0.0 1.9 1 1 0 1 1 1 1 ThiS family Cupin_2 PF07883.6 gi|345004769|ref|YP_004807622.1| - 1.1e-09 37.6 0.0 1.3e-09 37.3 0.0 1.2 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.14 gi|345004769|ref|YP_004807622.1| - 7e-05 22.5 0.0 9.5e-05 22.1 0.0 1.2 1 0 0 1 1 1 1 AraC-like ligand binding domain Cupin_3 PF05899.7 gi|345004769|ref|YP_004807622.1| - 0.0024 17.2 0.0 0.003 16.8 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF861) Pirin_C PF05726.8 gi|345004769|ref|YP_004807622.1| - 0.0043 17.0 0.0 0.0056 16.7 0.0 1.1 1 0 0 1 1 1 1 Pirin C-terminal cupin domain Pirin PF02678.11 gi|345004769|ref|YP_004807622.1| - 0.0078 16.0 0.0 0.0087 15.9 0.0 1.2 1 0 0 1 1 1 1 Pirin AraC_binding_2 PF14525.1 gi|345004769|ref|YP_004807622.1| - 0.039 13.5 0.2 0.052 13.1 0.1 1.2 1 0 0 1 1 1 0 AraC-binding-like domain Amino_oxidase PF01593.19 gi|345004770|ref|YP_004807623.1| - 4.4e-13 49.1 2.0 7.3e-12 45.0 1.4 2.0 1 1 0 1 1 1 1 Flavin containing amine oxidoreductase NAD_binding_8 PF13450.1 gi|345004770|ref|YP_004807623.1| - 3.2e-11 43.1 0.1 8.4e-11 41.7 0.0 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox_3 PF13738.1 gi|345004770|ref|YP_004807623.1| - 8.3e-06 26.0 0.0 0.0015 18.6 0.0 2.2 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|345004770|ref|YP_004807623.1| - 0.0026 16.7 0.5 0.0086 15.0 0.0 2.1 2 0 0 2 2 2 1 FAD dependent oxidoreductase FAD_binding_3 PF01494.14 gi|345004770|ref|YP_004807623.1| - 0.01 14.8 0.2 0.016 14.2 0.1 1.4 1 0 0 1 1 1 0 FAD binding domain Thi4 PF01946.12 gi|345004770|ref|YP_004807623.1| - 0.082 11.9 0.1 0.18 10.8 0.1 1.5 1 0 0 1 1 1 0 Thi4 family NAD_Gly3P_dh_N PF01210.18 gi|345004770|ref|YP_004807623.1| - 0.1 12.2 0.0 0.2 11.3 0.0 1.5 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Lycopene_cycl PF05834.7 gi|345004770|ref|YP_004807623.1| - 0.12 11.3 0.2 0.18 10.7 0.1 1.2 1 0 0 1 1 1 0 Lycopene cyclase protein NAD_binding_9 PF13454.1 gi|345004770|ref|YP_004807623.1| - 0.15 11.8 0.3 1.1 9.0 0.0 2.2 2 0 0 2 2 2 0 FAD-NAD(P)-binding Pyr_redox_2 PF07992.9 gi|345004770|ref|YP_004807623.1| - 0.16 11.8 0.1 0.65 9.8 0.1 1.9 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase PaaB PF06243.6 gi|345004772|ref|YP_004807625.1| - 1.8e-12 47.1 0.1 2.5e-12 46.7 0.1 1.2 1 0 0 1 1 1 1 Phenylacetic acid degradation B GYD PF08734.6 gi|345004773|ref|YP_004807626.1| - 1.4e-26 92.0 0.1 1.6e-26 91.8 0.1 1.0 1 0 0 1 1 1 1 GYD domain DDE_Tnp_1 PF01609.16 gi|345004774|ref|YP_004807627.1| - 4.2e-08 32.9 1.9 1.2e-06 28.2 1.3 2.3 1 1 0 1 1 1 1 Transposase DDE domain DUF2249 PF10006.4 gi|345004775|ref|YP_004807628.1| - 1.1e-13 50.5 0.7 1.4e-13 50.1 0.5 1.2 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2249) TusA PF01206.12 gi|345004775|ref|YP_004807628.1| - 2.4e-05 23.8 0.0 2.9e-05 23.6 0.0 1.1 1 0 0 1 1 1 1 Sulfurtransferase TusA DUF1931 PF09123.6 gi|345004775|ref|YP_004807628.1| - 0.092 12.6 0.0 0.12 12.3 0.0 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF1931) DUF4520 PF15016.1 gi|345004775|ref|YP_004807628.1| - 0.098 12.2 0.0 0.12 11.9 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4520) DUF2249 PF10006.4 gi|345004776|ref|YP_004807629.1| - 1.1e-23 82.5 0.4 1.3e-23 82.3 0.2 1.1 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2249) TusA PF01206.12 gi|345004776|ref|YP_004807629.1| - 0.019 14.5 0.0 0.027 14.0 0.0 1.2 1 0 0 1 1 1 0 Sulfurtransferase TusA DUF2249 PF10006.4 gi|345004777|ref|YP_004807630.1| - 3e-22 77.9 0.1 3.5e-22 77.7 0.1 1.1 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2249) HTH_10 PF04967.7 gi|345004778|ref|YP_004807631.1| - 8.6e-18 63.6 0.1 1.9e-17 62.5 0.0 1.6 1 0 0 1 1 1 1 HTH DNA binding domain HTH_IclR PF09339.5 gi|345004778|ref|YP_004807631.1| - 4.8e-05 22.8 0.3 0.0023 17.4 0.1 2.6 2 0 0 2 2 2 1 IclR helix-turn-helix domain MarR_2 PF12802.2 gi|345004778|ref|YP_004807631.1| - 0.015 14.9 0.1 0.041 13.5 0.1 1.7 1 0 0 1 1 1 0 MarR family HTH_24 PF13412.1 gi|345004778|ref|YP_004807631.1| - 0.042 13.2 0.0 0.079 12.3 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Radical_SAM PF04055.16 gi|345004779|ref|YP_004807632.1| - 9.8e-18 64.8 0.0 1.5e-17 64.2 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|345004779|ref|YP_004807632.1| - 2.2e-05 24.4 0.0 6.3e-05 22.9 0.0 1.7 1 1 1 2 2 2 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|345004779|ref|YP_004807632.1| - 9.7e-05 22.5 0.0 0.00019 21.5 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Copper-bind PF00127.15 gi|345004780|ref|YP_004807633.1| - 1.2e-17 63.9 0.2 2.1e-17 63.1 0.1 1.4 1 0 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family Cupredoxin_1 PF13473.1 gi|345004780|ref|YP_004807633.1| - 6.8e-05 22.6 0.9 0.00062 19.6 0.6 2.1 1 1 0 1 1 1 1 Cupredoxin-like domain TAT_signal PF10518.4 gi|345004780|ref|YP_004807633.1| - 0.00025 20.7 2.6 0.00041 20.1 1.8 1.4 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence PTSIIA_gutA PF03829.8 gi|345004780|ref|YP_004807633.1| - 0.078 12.6 0.0 0.12 12.0 0.0 1.2 1 0 0 1 1 1 0 PTS system glucitol/sorbitol-specific IIA component LPAM_1 PF08139.7 gi|345004780|ref|YP_004807633.1| - 0.49 10.6 2.0 0.78 10.0 1.4 1.3 1 0 0 1 1 1 0 Prokaryotic membrane lipoprotein lipid attachment site COX2 PF00116.15 gi|345004781|ref|YP_004807634.1| - 1.8e-15 56.8 0.0 4.1e-15 55.6 0.0 1.6 1 0 0 1 1 1 1 Cytochrome C oxidase subunit II, periplasmic domain Cupredoxin_1 PF13473.1 gi|345004781|ref|YP_004807634.1| - 1.4e-05 24.9 0.0 2.7e-05 23.9 0.0 1.5 1 0 0 1 1 1 1 Cupredoxin-like domain TAT_signal PF10518.4 gi|345004781|ref|YP_004807634.1| - 0.00063 19.5 5.4 0.0011 18.7 3.8 1.4 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence Cytomega_TRL10 PF06084.6 gi|345004782|ref|YP_004807635.1| - 0.15 11.8 0.0 0.25 11.1 0.0 1.3 1 0 0 1 1 1 0 Cytomegalovirus TRL10 protein NosD PF05048.8 gi|345004783|ref|YP_004807636.1| - 2.8e-48 164.1 12.3 2.7e-45 154.3 5.2 2.2 1 1 1 2 2 2 2 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.1 gi|345004783|ref|YP_004807636.1| - 2.6e-26 92.2 16.8 2.5e-21 76.0 3.7 2.7 1 1 2 3 3 3 2 Right handed beta helix region ABC_tran PF00005.22 gi|345004784|ref|YP_004807637.1| - 1.5e-30 106.3 0.0 2e-30 105.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|345004784|ref|YP_004807637.1| - 4.6e-11 43.2 0.0 7e-07 29.4 0.0 2.1 2 0 0 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|345004784|ref|YP_004807637.1| - 0.001 19.0 0.2 0.0019 18.2 0.1 1.4 1 1 0 1 1 1 1 AAA ATPase domain DUF258 PF03193.11 gi|345004784|ref|YP_004807637.1| - 0.017 14.3 0.0 0.023 13.9 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_15 PF13175.1 gi|345004784|ref|YP_004807637.1| - 0.034 13.2 0.0 0.61 9.0 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain KAP_NTPase PF07693.9 gi|345004784|ref|YP_004807637.1| - 0.037 13.0 0.0 0.037 13.0 0.0 1.2 1 0 0 1 1 1 0 KAP family P-loop domain AAA_29 PF13555.1 gi|345004784|ref|YP_004807637.1| - 0.049 13.1 0.1 0.11 12.0 0.1 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_10 PF12846.2 gi|345004784|ref|YP_004807637.1| - 0.15 11.4 0.1 2.7 7.3 0.1 2.1 2 0 0 2 2 2 0 AAA-like domain ABC2_membrane_2 PF12679.2 gi|345004785|ref|YP_004807638.1| - 2.6e-17 62.6 18.6 4.4e-17 61.8 12.9 1.3 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|345004785|ref|YP_004807638.1| - 0.0013 17.8 16.2 0.002 17.3 11.2 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.1 gi|345004785|ref|YP_004807638.1| - 0.04 13.1 1.6 0.064 12.5 1.1 1.4 1 1 0 1 1 1 0 ABC-2 family transporter protein Rab5ip PF07019.7 gi|345004787|ref|YP_004807640.1| - 0.02 15.0 1.6 0.021 14.9 1.1 1.1 1 0 0 1 1 1 0 Rab5-interacting protein (Rab5ip) DUF2061 PF09834.4 gi|345004787|ref|YP_004807640.1| - 0.55 10.4 2.1 0.66 10.2 1.4 1.2 1 0 0 1 1 1 0 Predicted membrane protein (DUF2061) COX1 PF00115.15 gi|345004788|ref|YP_004807641.1| - 0.027 13.0 49.0 0.18 10.4 11.7 4.4 1 1 1 4 4 4 0 Cytochrome C and Quinol oxidase polypeptide I IncA PF04156.9 gi|345004788|ref|YP_004807641.1| - 0.061 12.9 0.3 0.061 12.9 0.2 5.1 5 0 0 5 5 5 0 IncA protein Response_reg PF00072.19 gi|345004789|ref|YP_004807642.1| - 1.4e-20 73.3 0.0 3.4e-20 72.1 0.0 1.6 1 0 0 1 1 1 1 Response regulator receiver domain HATPase_c PF02518.21 gi|345004789|ref|YP_004807642.1| - 2e-15 56.4 0.7 4.3e-15 55.3 0.1 1.8 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_3 PF08447.6 gi|345004789|ref|YP_004807642.1| - 2.9e-12 46.5 0.0 6.7e-12 45.3 0.0 1.6 1 0 0 1 1 1 1 PAS fold PAS_9 PF13426.1 gi|345004789|ref|YP_004807642.1| - 1.2e-10 41.7 0.0 2.5e-10 40.6 0.0 1.6 1 0 0 1 1 1 1 PAS domain PAS PF00989.19 gi|345004789|ref|YP_004807642.1| - 4e-10 39.4 0.0 1e-09 38.1 0.0 1.7 1 0 0 1 1 1 1 PAS fold PAS_4 PF08448.5 gi|345004789|ref|YP_004807642.1| - 6.5e-10 39.0 0.0 2.3e-09 37.2 0.0 2.0 3 0 0 3 3 3 1 PAS fold OKR_DC_1_N PF03709.10 gi|345004789|ref|YP_004807642.1| - 0.0002 21.3 0.0 0.00059 19.8 0.0 1.8 2 0 0 2 2 2 1 Orn/Lys/Arg decarboxylase, N-terminal domain HATPase_c_3 PF13589.1 gi|345004789|ref|YP_004807642.1| - 0.0029 17.2 0.0 0.0059 16.2 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_11 PF14598.1 gi|345004789|ref|YP_004807642.1| - 0.068 13.1 0.0 0.13 12.2 0.0 1.4 1 0 0 1 1 1 0 PAS domain KaiA PF07688.7 gi|345004789|ref|YP_004807642.1| - 0.075 12.3 0.0 0.11 11.7 0.0 1.2 1 0 0 1 1 1 0 KaiA domain FleQ PF06490.6 gi|345004789|ref|YP_004807642.1| - 0.078 13.1 0.0 0.2 11.8 0.0 1.7 2 0 0 2 2 1 0 Flagellar regulatory protein FleQ DZR PF12773.2 gi|345004792|ref|YP_004807645.1| - 0.0051 16.6 0.2 0.0071 16.1 0.1 1.3 1 0 0 1 1 1 1 Double zinc ribbon Zn-ribbon_8 PF09723.5 gi|345004792|ref|YP_004807645.1| - 0.036 14.0 3.0 0.41 10.6 0.2 2.2 2 0 0 2 2 2 0 Zinc ribbon domain OrfB_Zn_ribbon PF07282.6 gi|345004792|ref|YP_004807645.1| - 0.037 13.6 0.6 0.057 13.0 0.4 1.4 1 1 0 1 1 1 0 Putative transposase DNA-binding domain Zn_Tnp_IS1595 PF12760.2 gi|345004792|ref|YP_004807645.1| - 0.046 13.5 0.3 0.08 12.7 0.2 1.4 1 1 0 1 1 1 0 Transposase zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|345004792|ref|YP_004807645.1| - 0.065 12.4 1.2 0.19 10.9 0.9 1.7 1 1 0 1 1 1 0 zinc-ribbon domain DiS_P_DiS PF06750.8 gi|345004792|ref|YP_004807645.1| - 0.087 12.6 0.0 0.088 12.6 0.0 1.1 1 0 0 1 1 1 0 Bacterial Peptidase A24 N-terminal domain UPF0547 PF10571.4 gi|345004792|ref|YP_004807645.1| - 0.099 12.3 1.3 0.23 11.1 0.9 1.6 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 zf-C4_Topoisom PF01396.14 gi|345004792|ref|YP_004807645.1| - 0.13 11.7 0.1 0.13 11.7 0.1 1.9 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger DNA_ligase_ZBD PF03119.11 gi|345004792|ref|YP_004807645.1| - 0.19 11.4 4.0 0.21 11.3 0.3 2.4 2 1 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain tRNA_anti-codon PF01336.20 gi|345004794|ref|YP_004807647.1| - 2.9e-09 36.6 0.1 8e-09 35.2 0.0 1.7 2 0 0 2 2 2 1 OB-fold nucleic acid binding domain S1 PF00575.18 gi|345004794|ref|YP_004807647.1| - 1.7e-07 31.2 0.0 5.2e-07 29.6 0.0 1.8 1 0 0 1 1 1 1 S1 RNA binding domain NESP55 PF06390.7 gi|345004794|ref|YP_004807647.1| - 5.2 6.3 25.8 0.83 8.9 14.4 2.2 2 0 0 2 2 2 0 Neuroendocrine-specific golgi protein P55 (NESP55) Yip1 PF04893.12 gi|345004796|ref|YP_004807649.1| - 2.3e-11 43.4 10.9 3e-11 43.1 7.6 1.1 1 0 0 1 1 1 1 Yip1 domain TK PF00265.13 gi|345004797|ref|YP_004807650.1| - 1.1e-47 161.8 0.0 1.2e-47 161.7 0.0 1.0 1 0 0 1 1 1 1 Thymidine kinase AAA_30 PF13604.1 gi|345004797|ref|YP_004807650.1| - 0.005 16.4 0.2 0.011 15.2 0.2 1.5 1 1 0 1 1 1 1 AAA domain zf-dskA_traR PF01258.12 gi|345004797|ref|YP_004807650.1| - 0.067 12.9 1.4 5.4 6.8 0.0 3.1 3 0 0 3 3 3 0 Prokaryotic dksA/traR C4-type zinc finger zf-C4_ClpX PF06689.8 gi|345004797|ref|YP_004807650.1| - 0.094 12.2 0.0 0.23 10.9 0.0 1.7 1 0 0 1 1 1 0 ClpX C4-type zinc finger AA_kinase PF00696.23 gi|345004798|ref|YP_004807651.1| - 3.8e-32 111.7 4.1 4.4e-32 111.5 2.8 1.0 1 0 0 1 1 1 1 Amino acid kinase family GHMP_kinases_N PF00288.21 gi|345004799|ref|YP_004807652.1| - 3.9e-15 55.6 0.4 8.1e-15 54.6 0.3 1.6 1 0 0 1 1 1 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.8 gi|345004799|ref|YP_004807652.1| - 1.5e-11 44.3 1.3 1.5e-11 44.3 0.9 2.1 2 0 0 2 2 2 1 GHMP kinases C terminal GalKase_gal_bdg PF10509.4 gi|345004799|ref|YP_004807652.1| - 0.00056 19.1 0.0 0.0011 18.2 0.0 1.5 1 0 0 1 1 1 1 Galactokinase galactose-binding signature Ribosomal_S2 PF00318.15 gi|345004800|ref|YP_004807653.1| - 1.1e-36 126.0 0.0 1.2e-18 67.1 0.1 2.1 1 1 1 2 2 2 2 Ribosomal protein S2 Enolase_C PF00113.17 gi|345004801|ref|YP_004807654.1| - 1.1e-64 218.3 1.6 1.1e-63 214.9 1.1 2.0 1 1 0 1 1 1 1 Enolase, C-terminal TIM barrel domain Enolase_N PF03952.11 gi|345004801|ref|YP_004807654.1| - 3.9e-37 127.1 0.3 7.3e-37 126.2 0.2 1.5 1 0 0 1 1 1 1 Enolase, N-terminal domain MR_MLE_C PF13378.1 gi|345004801|ref|YP_004807654.1| - 9.7e-05 22.3 0.2 0.0004 20.3 0.0 2.1 2 0 0 2 2 2 1 Enolase C-terminal domain-like MAAL_C PF07476.6 gi|345004801|ref|YP_004807654.1| - 0.0046 15.9 0.7 0.0096 14.8 0.0 1.8 2 0 0 2 2 2 1 Methylaspartate ammonia-lyase C-terminus MR_MLE PF01188.16 gi|345004801|ref|YP_004807654.1| - 0.01 16.3 0.9 0.028 14.9 0.2 2.1 1 1 1 2 2 2 0 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain RNA_pol_Rpb6 PF01192.17 gi|345004802|ref|YP_004807655.1| - 6.4e-19 67.4 0.0 6.9e-19 67.3 0.0 1.0 1 0 0 1 1 1 1 RNA polymerase Rpb6 RNA_pol_N PF01194.12 gi|345004803|ref|YP_004807656.1| - 5.4e-29 100.0 0.3 5.9e-29 99.8 0.2 1.0 1 0 0 1 1 1 1 RNA polymerases N / 8 kDa subunit DUF2655 PF10848.3 gi|345004803|ref|YP_004807656.1| - 0.021 14.6 0.0 0.067 13.0 0.0 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF2655) Ribosomal_S9 PF00380.14 gi|345004804|ref|YP_004807657.1| - 7.3e-36 123.0 0.0 8.2e-36 122.9 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S9/S16 Ribosomal_L13 PF00572.13 gi|345004805|ref|YP_004807658.1| - 1.1e-23 83.6 0.0 1.5e-23 83.2 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L13 Ribosomal_L18e PF00828.14 gi|345004806|ref|YP_004807659.1| - 7.5e-14 52.2 0.3 1.2e-13 51.5 0.2 1.3 1 1 0 1 1 1 1 Ribosomal protein L18e/L15 RNA_pol_A_bac PF01000.21 gi|345004807|ref|YP_004807660.1| - 2.4e-17 63.1 0.0 4.4e-16 59.0 0.0 2.5 2 1 0 2 2 2 1 RNA polymerase Rpb3/RpoA insert domain RNA_pol_L PF01193.19 gi|345004807|ref|YP_004807660.1| - 7.7e-12 44.1 0.0 1.3e-11 43.4 0.0 1.4 1 1 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain RNA_pol_L_2 PF13656.1 gi|345004807|ref|YP_004807660.1| - 0.027 13.8 0.0 0.063 12.7 0.0 1.6 1 0 0 1 1 1 0 RNA polymerase Rpb3/Rpb11 dimerisation domain DUF4198 PF10670.4 gi|345004807|ref|YP_004807660.1| - 0.12 12.4 0.0 0.21 11.5 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4198) Ribosomal_S11 PF00411.14 gi|345004808|ref|YP_004807661.1| - 6e-43 145.4 0.4 7.1e-43 145.2 0.3 1.1 1 0 0 1 1 1 1 Ribosomal protein S11 S4 PF01479.20 gi|345004809|ref|YP_004807662.1| - 1.1e-12 47.1 0.1 4.9e-12 45.0 0.0 2.0 2 0 0 2 2 2 1 S4 domain Ribosomal_S13 PF00416.17 gi|345004810|ref|YP_004807663.1| - 1.6e-33 115.3 1.2 2.2e-33 114.8 0.8 1.2 1 0 0 1 1 1 1 Ribosomal protein S13/S18 FbpA PF05833.6 gi|345004810|ref|YP_004807663.1| - 0.011 14.3 0.7 0.021 13.3 0.5 1.6 1 1 0 1 1 1 0 Fibronectin-binding protein A N-terminus (FbpA) HHH_5 PF14520.1 gi|345004810|ref|YP_004807663.1| - 0.11 12.6 0.1 0.19 11.9 0.1 1.7 1 1 0 1 1 1 0 Helix-hairpin-helix domain HHH_8 PF14716.1 gi|345004810|ref|YP_004807663.1| - 0.17 12.1 1.2 0.52 10.5 0.0 2.3 3 0 0 3 3 3 0 Helix-hairpin-helix domain DUF849 PF05853.7 gi|345004811|ref|YP_004807664.1| - 4.3e-82 275.0 0.0 4.8e-82 274.8 0.0 1.0 1 0 0 1 1 1 1 Prokaryotic protein of unknown function (DUF849) TAXi_C PF14541.1 gi|345004811|ref|YP_004807664.1| - 0.1 12.1 0.0 0.17 11.4 0.0 1.3 1 0 0 1 1 1 0 Xylanase inhibitor C-terminal Mob_synth_C PF06463.8 gi|345004813|ref|YP_004807666.1| - 9.8e-28 96.4 0.0 1.7e-27 95.6 0.0 1.4 1 0 0 1 1 1 1 Molybdenum Cofactor Synthesis C Radical_SAM PF04055.16 gi|345004813|ref|YP_004807666.1| - 1.7e-24 86.8 0.0 5.4e-24 85.2 0.0 1.8 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|345004813|ref|YP_004807666.1| - 1.4e-07 31.5 0.0 3.1e-07 30.4 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|345004813|ref|YP_004807666.1| - 1.6e-07 31.5 0.0 3.9e-07 30.2 0.0 1.6 1 0 0 1 1 1 1 4Fe-4S single cluster domain Imm49 PF15660.1 gi|345004813|ref|YP_004807666.1| - 0.006 16.5 0.0 0.012 15.6 0.0 1.5 1 0 0 1 1 1 1 Immunity protein 49 zinc_ribbon_2 PF13240.1 gi|345004813|ref|YP_004807666.1| - 0.057 12.9 0.3 0.057 12.9 0.2 2.0 2 0 0 2 2 2 0 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|345004813|ref|YP_004807666.1| - 0.064 12.4 0.1 0.064 12.4 0.1 1.7 2 0 0 2 2 2 0 zinc-ribbon domain zf-C2HC5 PF06221.8 gi|345004813|ref|YP_004807666.1| - 0.14 11.8 1.4 0.19 11.5 0.0 1.8 2 0 0 2 2 2 0 Putative zinc finger motif, C2HC5-type ParA PF10609.4 gi|345004814|ref|YP_004807667.1| - 5.8e-34 115.8 0.0 9.7e-34 115.1 0.0 1.4 1 0 0 1 1 1 1 ParA/MinD ATPase like CbiA PF01656.18 gi|345004814|ref|YP_004807667.1| - 2e-19 69.8 0.0 2.9e-19 69.2 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain DUF59 PF01883.14 gi|345004814|ref|YP_004807667.1| - 1.2e-11 44.3 0.2 2.4e-11 43.4 0.2 1.5 1 0 0 1 1 1 1 Domain of unknown function DUF59 AAA_31 PF13614.1 gi|345004814|ref|YP_004807667.1| - 1.2e-08 35.0 0.0 1.6e-07 31.3 0.0 2.1 1 1 0 1 1 1 1 AAA domain MipZ PF09140.6 gi|345004814|ref|YP_004807667.1| - 4.6e-08 32.4 0.0 6.6e-08 31.9 0.0 1.2 1 0 0 1 1 1 1 ATPase MipZ ArsA_ATPase PF02374.10 gi|345004814|ref|YP_004807667.1| - 4.5e-05 22.6 3.5 0.00017 20.7 0.7 2.0 2 0 0 2 2 2 1 Anion-transporting ATPase Fer4_NifH PF00142.13 gi|345004814|ref|YP_004807667.1| - 0.0008 18.6 0.0 0.0075 15.4 0.1 2.0 2 0 0 2 2 2 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family VirC1 PF07015.6 gi|345004814|ref|YP_004807667.1| - 0.00094 18.3 0.0 0.0015 17.6 0.0 1.2 1 0 0 1 1 1 1 VirC1 protein AAA_25 PF13481.1 gi|345004814|ref|YP_004807667.1| - 0.01 15.2 0.1 0.016 14.6 0.1 1.4 1 1 0 1 1 1 1 AAA domain AAA_10 PF12846.2 gi|345004814|ref|YP_004807667.1| - 0.041 13.3 0.1 0.059 12.8 0.0 1.2 1 0 0 1 1 1 0 AAA-like domain DUF258 PF03193.11 gi|345004814|ref|YP_004807667.1| - 0.096 11.8 0.0 0.16 11.1 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 APS_kinase PF01583.15 gi|345004814|ref|YP_004807667.1| - 0.15 11.6 0.0 0.3 10.7 0.0 1.4 1 0 0 1 1 1 0 Adenylylsulphate kinase UDG PF03167.14 gi|345004816|ref|YP_004807669.1| - 8.3e-25 87.0 0.0 1.1e-24 86.6 0.0 1.2 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily DUF3499 PF12005.3 gi|345004816|ref|YP_004807669.1| - 0.024 14.8 0.0 0.049 13.8 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3499) HupE_UreJ PF04955.7 gi|345004817|ref|YP_004807670.1| - 0.031 13.5 2.2 0.035 13.3 1.6 1.1 1 0 0 1 1 1 0 HupE / UreJ protein DUF3981 PF13139.1 gi|345004817|ref|YP_004807670.1| - 0.067 13.1 0.0 0.074 13.0 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3981) FeoB_C PF07664.7 gi|345004817|ref|YP_004807670.1| - 0.21 11.0 0.7 2.3 7.6 0.0 2.0 2 0 0 2 2 2 0 Ferrous iron transport protein B C terminus DUF2064 PF09837.4 gi|345004818|ref|YP_004807671.1| - 7e-07 28.8 0.1 1.1e-06 28.3 0.1 1.4 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2064) CofC PF01983.11 gi|345004818|ref|YP_004807671.1| - 0.0029 16.6 0.0 0.71 8.7 0.0 2.1 2 0 0 2 2 2 2 Guanylyl transferase CofC like CTP_transf_3 PF02348.14 gi|345004818|ref|YP_004807671.1| - 0.069 12.7 0.0 0.094 12.3 0.0 1.3 1 0 0 1 1 1 0 Cytidylyltransferase CMAS PF02353.15 gi|345004819|ref|YP_004807672.1| - 0.064 12.3 0.2 0.065 12.3 0.1 1.0 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase SBDS PF01172.13 gi|345004819|ref|YP_004807672.1| - 0.11 12.3 0.0 0.13 12.0 0.0 1.2 1 0 0 1 1 1 0 Shwachman-Bodian-Diamond syndrome (SBDS) protein PRK PF00485.13 gi|345004820|ref|YP_004807673.1| - 1.3e-47 161.8 0.0 1.7e-47 161.5 0.0 1.1 1 0 0 1 1 1 1 Phosphoribulokinase / Uridine kinase family AAA_17 PF13207.1 gi|345004820|ref|YP_004807673.1| - 5.7e-08 33.6 1.1 1.1e-07 32.6 0.7 1.7 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|345004820|ref|YP_004807673.1| - 1.5e-05 25.3 3.6 6.7e-05 23.1 2.5 2.0 1 1 0 1 1 1 1 AAA domain Zeta_toxin PF06414.7 gi|345004820|ref|YP_004807673.1| - 4.4e-05 22.6 0.0 7.4e-05 21.9 0.0 1.3 1 0 0 1 1 1 1 Zeta toxin AAA_26 PF13500.1 gi|345004820|ref|YP_004807673.1| - 5.9e-05 22.7 0.5 0.01 15.4 0.1 2.6 1 1 1 2 2 2 1 AAA domain CoaE PF01121.15 gi|345004820|ref|YP_004807673.1| - 0.00016 21.1 0.5 0.015 14.6 0.0 2.2 2 0 0 2 2 2 1 Dephospho-CoA kinase ABC_tran PF00005.22 gi|345004820|ref|YP_004807673.1| - 0.0013 19.0 0.0 0.0018 18.5 0.0 1.4 1 1 0 1 1 1 1 ABC transporter AAA_28 PF13521.1 gi|345004820|ref|YP_004807673.1| - 0.0037 17.2 0.0 0.0062 16.5 0.0 1.4 1 0 0 1 1 1 1 AAA domain T2SE PF00437.15 gi|345004820|ref|YP_004807673.1| - 0.025 13.4 0.0 0.12 11.3 0.0 1.9 2 0 0 2 2 2 0 Type II/IV secretion system protein AAA_33 PF13671.1 gi|345004820|ref|YP_004807673.1| - 0.044 13.6 0.0 0.086 12.7 0.0 1.5 2 0 0 2 2 2 0 AAA domain MobB PF03205.9 gi|345004820|ref|YP_004807673.1| - 0.057 13.1 0.4 2.7 7.6 0.0 2.8 2 1 0 3 3 3 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_16 PF13191.1 gi|345004820|ref|YP_004807673.1| - 0.061 13.2 0.0 0.1 12.5 0.0 1.5 1 1 0 1 1 1 0 AAA ATPase domain DUF87 PF01935.12 gi|345004820|ref|YP_004807673.1| - 0.55 10.0 2.9 2.9 7.6 0.9 2.2 1 1 1 2 2 2 0 Domain of unknown function DUF87 Peripla_BP_6 PF13458.1 gi|345004821|ref|YP_004807674.1| - 5.4e-33 114.7 3.9 7.1e-33 114.3 2.7 1.1 1 0 0 1 1 1 1 Periplasmic binding protein ANF_receptor PF01094.23 gi|345004821|ref|YP_004807674.1| - 5.4e-27 94.4 0.1 6.8e-27 94.1 0.1 1.0 1 0 0 1 1 1 1 Receptor family ligand binding region LppC PF04348.8 gi|345004821|ref|YP_004807674.1| - 6.9e-05 21.6 0.1 0.00016 20.4 0.0 1.5 1 1 0 1 1 1 1 LppC putative lipoprotein SH3_7 PF12914.2 gi|345004821|ref|YP_004807674.1| - 0.0059 16.3 0.5 0.088 12.6 0.0 2.5 2 0 0 2 2 2 1 SH3 domain of SH3b2 type Peripla_BP_5 PF13433.1 gi|345004821|ref|YP_004807674.1| - 0.03 13.0 0.0 2.9 6.5 0.0 2.2 2 0 0 2 2 2 0 Periplasmic binding protein domain PAC2 PF09754.4 gi|345004822|ref|YP_004807675.1| - 1.2e-40 139.7 0.0 1.4e-40 139.5 0.0 1.0 1 0 0 1 1 1 1 PAC2 family DUF1700 PF08006.6 gi|345004823|ref|YP_004807676.1| - 4.3 6.5 6.0 0.77 9.0 1.0 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF1700) Aminotran_1_2 PF00155.16 gi|345004824|ref|YP_004807677.1| - 1.5e-60 205.0 0.0 1.7e-60 204.8 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.12 gi|345004824|ref|YP_004807677.1| - 1.4e-15 57.2 0.1 2.1e-15 56.6 0.0 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.16 gi|345004824|ref|YP_004807677.1| - 1.5e-08 34.1 0.0 7.3e-08 31.8 0.0 1.8 2 0 0 2 2 2 1 Beta-eliminating lyase Cys_Met_Meta_PP PF01053.15 gi|345004824|ref|YP_004807677.1| - 9.7e-07 27.3 0.0 1.3e-06 26.9 0.0 1.1 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_5 PF00266.14 gi|345004824|ref|YP_004807677.1| - 2.3e-05 23.3 0.0 3.6e-05 22.6 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V Aminotran_3 PF00202.16 gi|345004824|ref|YP_004807677.1| - 0.1 11.4 0.0 0.18 10.6 0.0 1.3 1 0 0 1 1 1 0 Aminotransferase class-III NMT1_2 PF13379.1 gi|345004825|ref|YP_004807678.1| - 4.5e-34 117.9 0.0 5.6e-34 117.6 0.0 1.1 1 0 0 1 1 1 1 NMT1-like family Phosphonate-bd PF12974.2 gi|345004825|ref|YP_004807678.1| - 2e-05 24.0 0.0 3.2e-05 23.4 0.0 1.3 1 0 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein NMT1 PF09084.6 gi|345004825|ref|YP_004807678.1| - 0.00045 19.8 0.0 0.0014 18.2 0.0 1.7 1 1 0 1 1 1 1 NMT1/THI5 like TAT_signal PF10518.4 gi|345004825|ref|YP_004807678.1| - 0.00093 19.0 1.6 0.0034 17.2 1.1 2.0 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence BPD_transp_1 PF00528.17 gi|345004826|ref|YP_004807679.1| - 1e-17 64.2 13.7 1e-17 64.2 9.5 1.8 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component Romo1 PF10247.4 gi|345004826|ref|YP_004807679.1| - 0.019 15.1 0.1 0.064 13.4 0.0 1.9 2 0 0 2 2 2 0 Reactive mitochondrial oxygen species modulator 1 ABC_tran PF00005.22 gi|345004827|ref|YP_004807680.1| - 7e-31 107.3 0.0 9.7e-31 106.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|345004827|ref|YP_004807680.1| - 1.9e-07 31.3 0.0 0.0017 18.4 0.0 2.1 2 0 0 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|345004827|ref|YP_004807680.1| - 4.5e-05 23.5 0.0 5.9e-05 23.1 0.0 1.3 1 0 0 1 1 1 1 AAA ATPase domain DUF258 PF03193.11 gi|345004827|ref|YP_004807680.1| - 0.00022 20.4 0.0 0.00036 19.7 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_23 PF13476.1 gi|345004827|ref|YP_004807680.1| - 0.00053 20.3 0.0 0.00078 19.8 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA PF00004.24 gi|345004827|ref|YP_004807680.1| - 0.0024 18.0 0.4 0.011 15.9 0.2 2.0 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_28 PF13521.1 gi|345004827|ref|YP_004807680.1| - 0.0029 17.5 0.3 0.018 15.0 0.1 2.0 2 0 0 2 2 2 1 AAA domain AAA_17 PF13207.1 gi|345004827|ref|YP_004807680.1| - 0.0044 17.8 0.5 0.011 16.5 0.3 1.7 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|345004827|ref|YP_004807680.1| - 0.0055 16.8 0.2 0.015 15.4 0.1 1.7 2 0 0 2 2 2 1 AAA domain AAA_19 PF13245.1 gi|345004827|ref|YP_004807680.1| - 0.0055 16.4 0.3 0.082 12.6 0.1 2.5 2 0 0 2 2 2 1 Part of AAA domain AAA_15 PF13175.1 gi|345004827|ref|YP_004807680.1| - 0.0089 15.1 0.0 0.79 8.6 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain SMC_N PF02463.14 gi|345004827|ref|YP_004807680.1| - 0.012 14.8 0.0 0.84 8.8 0.0 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain IstB_IS21 PF01695.12 gi|345004827|ref|YP_004807680.1| - 0.012 15.0 0.0 0.022 14.2 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein MobB PF03205.9 gi|345004827|ref|YP_004807680.1| - 0.014 15.1 0.4 0.039 13.6 0.1 1.8 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B NB-ARC PF00931.17 gi|345004827|ref|YP_004807680.1| - 0.014 14.2 0.0 0.022 13.6 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain NACHT PF05729.7 gi|345004827|ref|YP_004807680.1| - 0.015 14.9 0.1 0.029 14.0 0.1 1.4 1 0 0 1 1 1 0 NACHT domain AAA_29 PF13555.1 gi|345004827|ref|YP_004807680.1| - 0.015 14.7 0.0 0.04 13.4 0.0 1.7 1 0 0 1 1 1 0 P-loop containing region of AAA domain ATP-synt_ab PF00006.20 gi|345004827|ref|YP_004807680.1| - 0.018 14.5 0.8 0.019 14.4 0.6 1.3 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_18 PF13238.1 gi|345004827|ref|YP_004807680.1| - 0.018 15.3 0.4 0.06 13.6 0.3 1.9 2 0 0 2 2 1 0 AAA domain PduV-EutP PF10662.4 gi|345004827|ref|YP_004807680.1| - 0.019 14.4 0.0 0.042 13.3 0.0 1.6 2 0 0 2 2 1 0 Ethanolamine utilisation - propanediol utilisation AAA_25 PF13481.1 gi|345004827|ref|YP_004807680.1| - 0.019 14.3 0.4 0.046 13.1 0.2 1.9 1 1 0 1 1 1 0 AAA domain AAA_5 PF07728.9 gi|345004827|ref|YP_004807680.1| - 0.026 14.2 0.0 0.048 13.3 0.0 1.4 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) Arch_ATPase PF01637.13 gi|345004827|ref|YP_004807680.1| - 0.029 14.0 0.0 0.067 12.8 0.0 1.5 2 0 0 2 2 2 0 Archaeal ATPase AAA_14 PF13173.1 gi|345004827|ref|YP_004807680.1| - 0.032 14.1 0.1 0.07 13.0 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.1 gi|345004827|ref|YP_004807680.1| - 0.032 14.0 0.1 0.075 12.9 0.0 1.6 1 0 0 1 1 1 0 AAA domain Rad17 PF03215.10 gi|345004827|ref|YP_004807680.1| - 0.052 12.2 0.0 0.07 11.7 0.0 1.1 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein MMR_HSR1 PF01926.18 gi|345004827|ref|YP_004807680.1| - 0.062 13.2 0.0 0.1 12.5 0.0 1.7 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_30 PF13604.1 gi|345004827|ref|YP_004807680.1| - 0.063 12.8 0.1 0.21 11.1 0.0 1.8 2 0 0 2 2 2 0 AAA domain DEAD PF00270.24 gi|345004827|ref|YP_004807680.1| - 0.063 12.7 0.0 0.13 11.7 0.0 1.6 1 1 0 1 1 1 0 DEAD/DEAH box helicase SRPRB PF09439.5 gi|345004827|ref|YP_004807680.1| - 0.081 12.1 0.1 0.24 10.5 0.0 1.7 2 0 0 2 2 2 0 Signal recognition particle receptor beta subunit ABC_ATPase PF09818.4 gi|345004827|ref|YP_004807680.1| - 0.081 11.4 0.2 10 4.5 0.0 2.8 2 1 0 2 2 2 0 Predicted ATPase of the ABC class AAA_24 PF13479.1 gi|345004827|ref|YP_004807680.1| - 0.098 12.2 0.2 0.36 10.3 0.1 1.8 2 0 0 2 2 2 0 AAA domain RNA_helicase PF00910.17 gi|345004827|ref|YP_004807680.1| - 0.13 12.4 0.1 0.24 11.5 0.0 1.5 1 0 0 1 1 1 0 RNA helicase SbcCD_C PF13558.1 gi|345004827|ref|YP_004807680.1| - 0.13 12.1 0.0 0.33 10.8 0.0 1.7 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_10 PF12846.2 gi|345004827|ref|YP_004807680.1| - 0.17 11.2 0.1 0.27 10.6 0.1 1.3 1 0 0 1 1 1 0 AAA-like domain HalX PF08663.5 gi|345004828|ref|YP_004807681.1| - 0.38 10.7 2.7 0.73 9.8 1.9 1.6 1 1 0 1 1 1 0 HalX domain ResIII PF04851.10 gi|345004829|ref|YP_004807682.1| - 3.7e-26 92.0 0.0 2.1e-24 86.3 0.0 2.9 2 1 0 2 2 2 1 Type III restriction enzyme, res subunit Helicase_C PF00271.26 gi|345004829|ref|YP_004807682.1| - 7.2e-15 54.6 0.0 1.8e-14 53.3 0.0 1.8 1 0 0 1 1 1 1 Helicase conserved C-terminal domain DEAD PF00270.24 gi|345004829|ref|YP_004807682.1| - 1.2e-09 37.8 0.0 4.7e-09 35.9 0.0 1.9 2 1 0 2 2 2 1 DEAD/DEAH box helicase SNF2_N PF00176.18 gi|345004829|ref|YP_004807682.1| - 6.1e-05 21.9 0.0 0.00038 19.3 0.0 2.2 2 1 0 2 2 2 1 SNF2 family N-terminal domain AAA_19 PF13245.1 gi|345004829|ref|YP_004807682.1| - 0.018 14.7 1.1 0.59 9.9 0.0 2.8 2 0 0 2 2 2 0 Part of AAA domain Helicase_C_2 PF13307.1 gi|345004829|ref|YP_004807682.1| - 0.071 13.0 0.0 3.7 7.4 0.0 2.6 2 0 0 2 2 2 0 Helicase C-terminal domain DUF790 PF05626.6 gi|345004831|ref|YP_004807684.1| - 8.5e-94 314.1 0.0 1.1e-93 313.7 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF790) Nol1_Nop2_Fmu_2 PF13636.1 gi|345004832|ref|YP_004807685.1| - 8.5e-15 54.6 0.0 1.1e-14 54.3 0.0 1.1 1 0 0 1 1 1 1 pre-rRNA processing and ribosome biogenesis Nol1_Nop2_Fmu PF01189.12 gi|345004833|ref|YP_004807686.1| - 3.6e-50 170.9 0.0 4.2e-50 170.7 0.0 1.0 1 0 0 1 1 1 1 NOL1/NOP2/sun family Methyltransf_31 PF13847.1 gi|345004833|ref|YP_004807686.1| - 1.5e-07 31.1 0.0 2.1e-07 30.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|345004833|ref|YP_004807686.1| - 2.8e-07 30.5 0.1 4.6e-07 29.8 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|345004833|ref|YP_004807686.1| - 1.3e-05 25.6 0.0 2.6e-05 24.7 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain FtsJ PF01728.14 gi|345004833|ref|YP_004807686.1| - 0.0043 17.0 0.0 0.0069 16.3 0.0 1.4 1 0 0 1 1 1 1 FtsJ-like methyltransferase Acetyltransf_1 PF00583.19 gi|345004834|ref|YP_004807687.1| - 6.6e-09 35.6 0.0 1.2e-08 34.8 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_CG PF14542.1 gi|345004834|ref|YP_004807687.1| - 9.4e-05 22.2 0.1 0.00015 21.5 0.1 1.3 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_10 PF13673.1 gi|345004834|ref|YP_004807687.1| - 0.00062 19.8 0.1 0.001 19.1 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|345004834|ref|YP_004807687.1| - 0.0021 18.2 0.0 0.0032 17.5 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|345004834|ref|YP_004807687.1| - 0.028 14.6 0.1 0.041 14.0 0.0 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Redoxin PF08534.5 gi|345004834|ref|YP_004807687.1| - 0.087 12.3 0.1 14 5.1 0.0 2.6 2 1 1 3 3 3 0 Redoxin dCMP_cyt_deam_1 PF00383.17 gi|345004835|ref|YP_004807688.1| - 3.9e-17 61.7 0.5 4.9e-17 61.4 0.4 1.1 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region dCMP_cyt_deam_2 PF08211.6 gi|345004835|ref|YP_004807688.1| - 1.2e-10 41.4 1.4 1.6e-10 41.0 0.5 1.5 2 0 0 2 2 2 1 Cytidine and deoxycytidylate deaminase zinc-binding region Cupin_2 PF07883.6 gi|345004836|ref|YP_004807689.1| - 8.2e-17 60.4 0.5 1.5e-16 59.6 0.1 1.6 2 0 0 2 2 2 1 Cupin domain CENP-C_C PF11699.3 gi|345004836|ref|YP_004807689.1| - 0.00047 20.0 0.0 0.00071 19.4 0.0 1.3 1 0 0 1 1 1 1 Mif2/CENP-C like Lar_restr_allev PF14354.1 gi|345004836|ref|YP_004807689.1| - 0.00056 20.1 2.5 0.0013 19.0 1.7 1.6 1 0 0 1 1 1 1 Restriction alleviation protein Lar AraC_binding PF02311.14 gi|345004836|ref|YP_004807689.1| - 0.00099 18.8 0.0 0.0016 18.1 0.0 1.4 1 0 0 1 1 1 1 AraC-like ligand binding domain Cupin_3 PF05899.7 gi|345004836|ref|YP_004807689.1| - 0.028 13.8 0.0 0.05 12.9 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF861) FdtA PF05523.6 gi|345004836|ref|YP_004807689.1| - 0.052 13.0 0.0 0.097 12.1 0.0 1.4 1 1 0 1 1 1 0 WxcM-like, C-terminal zf-ribbon_3 PF13248.1 gi|345004836|ref|YP_004807689.1| - 0.064 12.4 0.8 2.9 7.1 0.1 2.4 2 0 0 2 2 2 0 zinc-ribbon domain MannoseP_isomer PF01050.13 gi|345004836|ref|YP_004807689.1| - 0.076 12.6 0.0 0.099 12.2 0.0 1.1 1 0 0 1 1 1 0 Mannose-6-phosphate isomerase AraC_binding_2 PF14525.1 gi|345004836|ref|YP_004807689.1| - 0.078 12.5 0.0 0.086 12.4 0.0 1.2 1 0 0 1 1 1 0 AraC-binding-like domain Zn_Tnp_IS1595 PF12760.2 gi|345004836|ref|YP_004807689.1| - 0.096 12.5 0.2 0.2 11.5 0.1 1.5 1 0 0 1 1 1 0 Transposase zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|345004836|ref|YP_004807689.1| - 0.13 12.2 1.3 10 6.1 0.1 2.3 2 0 0 2 2 2 0 Zinc ribbon domain Nudix_N_2 PF14803.1 gi|345004836|ref|YP_004807689.1| - 0.18 11.4 0.9 1.7 8.3 0.7 2.5 2 1 1 3 3 3 0 Nudix N-terminal TF_Zn_Ribbon PF08271.7 gi|345004836|ref|YP_004807689.1| - 0.26 10.6 4.0 0.59 9.4 2.8 1.6 1 0 0 1 1 1 0 TFIIB zinc-binding zf-dskA_traR PF01258.12 gi|345004836|ref|YP_004807689.1| - 2.1 8.1 7.7 22 4.9 0.1 3.6 4 0 0 4 4 4 0 Prokaryotic dksA/traR C4-type zinc finger DDE_Tnp_IS66 PF03050.9 gi|345004839|ref|YP_004807692.1| - 3e-53 180.8 0.2 3e-53 180.8 0.1 1.8 2 0 0 2 2 2 1 Transposase IS66 family Atg14 PF10186.4 gi|345004839|ref|YP_004807692.1| - 0.00026 20.0 1.8 0.00055 18.9 1.3 1.5 1 0 0 1 1 1 1 UV radiation resistance protein and autophagy-related subunit 14 SlyX PF04102.7 gi|345004839|ref|YP_004807692.1| - 0.00064 20.0 4.5 0.0017 18.6 3.1 1.8 1 0 0 1 1 1 1 SlyX DASH_Spc34 PF08657.5 gi|345004839|ref|YP_004807692.1| - 0.0012 18.5 3.2 0.0026 17.4 2.2 1.6 1 0 0 1 1 1 1 DASH complex subunit Spc34 IncA PF04156.9 gi|345004839|ref|YP_004807692.1| - 0.0033 17.0 4.1 0.0033 17.0 2.9 1.7 2 0 0 2 2 1 1 IncA protein Fmp27_WPPW PF10359.4 gi|345004839|ref|YP_004807692.1| - 0.0039 15.6 2.7 0.0055 15.1 1.9 1.1 1 0 0 1 1 1 1 RNA pol II promoter Fmp27 protein domain DUF869 PF05911.6 gi|345004839|ref|YP_004807692.1| - 0.0053 15.0 1.3 0.0072 14.6 0.9 1.1 1 0 0 1 1 1 1 Plant protein of unknown function (DUF869) ATG16 PF08614.6 gi|345004839|ref|YP_004807692.1| - 0.0068 16.2 8.4 0.015 15.1 5.8 1.5 1 0 0 1 1 1 1 Autophagy protein 16 (ATG16) DUF16 PF01519.11 gi|345004839|ref|YP_004807692.1| - 0.016 15.4 3.3 0.036 14.2 2.3 1.5 1 0 0 1 1 1 0 Protein of unknown function DUF16 DUF3584 PF12128.3 gi|345004839|ref|YP_004807692.1| - 0.022 12.1 5.7 0.032 11.5 4.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) DDE_Tnp_IS240 PF13610.1 gi|345004839|ref|YP_004807692.1| - 0.042 13.8 3.6 0.52 10.2 0.1 2.6 2 1 0 2 2 2 0 DDE domain Exonuc_VII_L PF02601.10 gi|345004839|ref|YP_004807692.1| - 0.099 11.8 1.2 0.17 11.0 0.8 1.3 1 0 0 1 1 1 0 Exonuclease VII, large subunit DUF4446 PF14584.1 gi|345004839|ref|YP_004807692.1| - 0.1 12.4 2.7 0.2 11.4 1.9 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF4446) AAA_13 PF13166.1 gi|345004839|ref|YP_004807692.1| - 0.11 10.8 4.6 0.17 10.2 3.2 1.1 1 0 0 1 1 1 0 AAA domain DUF1664 PF07889.7 gi|345004839|ref|YP_004807692.1| - 0.12 12.2 2.1 0.21 11.3 1.5 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1664) AAA_23 PF13476.1 gi|345004839|ref|YP_004807692.1| - 0.12 12.6 6.7 0.24 11.7 4.6 1.4 1 0 0 1 1 1 0 AAA domain TMF_DNA_bd PF12329.3 gi|345004839|ref|YP_004807692.1| - 0.23 11.2 11.8 0.62 9.9 8.2 1.7 1 0 0 1 1 1 0 TATA element modulatory factor 1 DNA binding UPF0449 PF15136.1 gi|345004839|ref|YP_004807692.1| - 0.23 11.6 10.4 0.31 11.2 3.2 2.6 2 0 0 2 2 2 0 Uncharacterised protein family UPF0449 DUF3186 PF11382.3 gi|345004839|ref|YP_004807692.1| - 0.26 10.4 0.9 0.4 9.7 0.7 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3186) HSBP1 PF06825.7 gi|345004839|ref|YP_004807692.1| - 0.31 10.6 4.9 2.2 7.9 1.2 2.4 2 0 0 2 2 2 0 Heat shock factor binding protein 1 Fzo_mitofusin PF04799.8 gi|345004839|ref|YP_004807692.1| - 0.67 9.3 2.6 1.2 8.4 1.8 1.3 1 0 0 1 1 1 0 fzo-like conserved region V_ATPase_I PF01496.14 gi|345004839|ref|YP_004807692.1| - 0.7 7.6 4.2 1 7.1 2.9 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family Synaptobrevin PF00957.16 gi|345004839|ref|YP_004807692.1| - 0.96 9.1 3.2 1.9 8.1 2.2 1.4 1 0 0 1 1 1 0 Synaptobrevin Mnd1 PF03962.10 gi|345004839|ref|YP_004807692.1| - 1.3 8.6 8.4 0.9 9.1 4.4 1.7 2 0 0 2 2 2 0 Mnd1 family TMPIT PF07851.8 gi|345004839|ref|YP_004807692.1| - 1.3 8.0 2.9 2.5 7.0 2.0 1.4 1 0 0 1 1 1 0 TMPIT-like protein DUF3450 PF11932.3 gi|345004839|ref|YP_004807692.1| - 1.5 8.0 11.0 0.3 10.3 4.8 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF3450) XhlA PF10779.4 gi|345004839|ref|YP_004807692.1| - 1.6 8.7 10.1 3.7 7.5 7.0 1.6 1 0 0 1 1 1 0 Haemolysin XhlA DUF972 PF06156.8 gi|345004839|ref|YP_004807692.1| - 2.1 8.7 8.7 1 9.7 4.2 1.8 2 0 0 2 2 1 0 Protein of unknown function (DUF972) FemAB PF02388.11 gi|345004839|ref|YP_004807692.1| - 2.2 6.9 4.6 3.3 6.2 3.2 1.1 1 0 0 1 1 1 0 FemAB family DUF3552 PF12072.3 gi|345004839|ref|YP_004807692.1| - 2.4 7.3 20.3 0.03 13.5 7.9 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF3552) Daxx PF03344.10 gi|345004839|ref|YP_004807692.1| - 4.3 5.6 13.9 6.4 5.1 9.7 1.1 1 0 0 1 1 1 0 Daxx Family Spc7 PF08317.6 gi|345004839|ref|YP_004807692.1| - 4.8 5.7 13.1 0.22 10.1 5.0 1.6 2 0 0 2 2 2 0 Spc7 kinetochore protein RHH_1 PF01402.16 gi|345004840|ref|YP_004807693.1| - 3.3e-05 23.5 0.6 0.00025 20.8 0.0 2.0 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family GvpK PF05121.7 gi|345004840|ref|YP_004807693.1| - 0.0047 16.7 0.1 0.0065 16.2 0.1 1.2 1 0 0 1 1 1 1 Gas vesicle protein K SHOCT PF09851.4 gi|345004840|ref|YP_004807693.1| - 0.011 15.1 1.0 0.019 14.4 0.7 1.4 1 0 0 1 1 1 0 Short C-terminal domain RHH_2 PF03693.9 gi|345004840|ref|YP_004807693.1| - 0.075 13.2 0.3 1.2 9.3 0.2 2.0 1 1 0 1 1 1 0 Uncharacterised protein family (UPF0156) FliT PF05400.8 gi|345004840|ref|YP_004807693.1| - 0.079 13.3 0.3 0.099 13.0 0.2 1.3 1 1 0 1 1 1 0 Flagellar protein FliT Glycos_transf_2 PF00535.21 gi|345004842|ref|YP_004807695.1| - 9.3e-17 61.2 0.0 1.3e-16 60.7 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|345004842|ref|YP_004807695.1| - 8.8e-08 32.2 0.0 1.6e-07 31.4 0.0 1.4 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.1 gi|345004842|ref|YP_004807695.1| - 2.5e-06 27.6 0.0 4.1e-06 27.0 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 MR_MLE PF01188.16 gi|345004842|ref|YP_004807695.1| - 0.039 14.4 0.0 0.096 13.2 0.0 1.6 1 0 0 1 1 1 0 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain DUF4131 PF13567.1 gi|345004843|ref|YP_004807696.1| - 0.12 11.7 0.9 0.13 11.6 0.6 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) Peptidase_M48 PF01435.13 gi|345004844|ref|YP_004807697.1| - 4.1e-36 124.6 0.0 5.3e-36 124.2 0.0 1.2 1 0 0 1 1 1 1 Peptidase family M48 Peptidase_M56 PF05569.6 gi|345004844|ref|YP_004807697.1| - 4.4e-07 29.1 0.0 2.2e-06 26.8 0.0 1.9 2 0 0 2 2 2 1 BlaR1 peptidase M56 Peptidase_MA_2 PF13485.1 gi|345004844|ref|YP_004807697.1| - 0.0025 17.8 0.0 0.0037 17.3 0.0 1.4 1 1 0 1 1 1 1 Peptidase MA superfamily SprT-like PF10263.4 gi|345004844|ref|YP_004807697.1| - 0.0041 16.7 0.0 0.0059 16.2 0.0 1.2 1 0 0 1 1 1 1 SprT-like family Peptidase_A24 PF01478.13 gi|345004844|ref|YP_004807697.1| - 0.12 12.5 6.6 0.37 10.9 1.5 2.3 2 0 0 2 2 2 0 Type IV leader peptidase family DUF45 PF01863.12 gi|345004844|ref|YP_004807697.1| - 0.12 12.0 0.0 0.19 11.4 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function DUF45 Cut8_M PF14483.1 gi|345004844|ref|YP_004807697.1| - 0.17 11.7 1.7 4.1 7.2 0.0 2.5 2 0 0 2 2 2 0 Cut8 dimerisation domain DUF21 PF01595.15 gi|345004845|ref|YP_004807698.1| - 9e-50 168.5 1.7 1.6e-49 167.6 1.1 1.4 1 0 0 1 1 1 1 Domain of unknown function DUF21 CorC_HlyC PF03471.12 gi|345004845|ref|YP_004807698.1| - 1.4e-21 76.0 1.6 4.5e-21 74.4 0.6 2.3 2 0 0 2 2 2 1 Transporter associated domain CBS PF00571.23 gi|345004845|ref|YP_004807698.1| - 5.6e-12 45.2 4.3 3.2e-05 23.6 0.0 3.1 3 0 0 3 3 3 2 CBS domain Plasmodium_HRP PF05403.6 gi|345004845|ref|YP_004807698.1| - 0.0098 15.4 0.1 0.015 14.9 0.1 1.2 1 0 0 1 1 1 1 Plasmodium histidine-rich protein (HRPII/III) TrkA_N PF02254.13 gi|345004846|ref|YP_004807699.1| - 1e-30 106.1 8.1 5.5e-18 65.0 0.8 2.5 2 0 0 2 2 2 2 TrkA-N domain TrkA_C PF02080.16 gi|345004846|ref|YP_004807699.1| - 4.6e-16 58.1 0.5 2.5e-07 30.1 0.0 3.3 4 0 0 4 4 4 2 TrkA-C domain Ion_trans_2 PF07885.11 gi|345004846|ref|YP_004807699.1| - 0.0072 16.0 5.6 0.013 15.1 3.9 1.4 1 0 0 1 1 1 1 Ion channel Leader_Thr PF08254.6 gi|345004846|ref|YP_004807699.1| - 0.045 13.4 2.4 0.13 11.9 1.7 1.8 1 0 0 1 1 1 0 Threonine leader peptide Alkyl_sulf_dimr PF14863.1 gi|345004846|ref|YP_004807699.1| - 0.13 12.4 0.0 1 9.5 0.0 2.3 2 0 0 2 2 2 0 Alkyl sulfatase dimerisation Glycos_transf_2 PF00535.21 gi|345004850|ref|YP_004807703.1| - 1.8e-21 76.5 0.0 2.3e-21 76.1 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|345004850|ref|YP_004807703.1| - 1.9e-12 47.5 0.2 2.5e-12 47.1 0.1 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.4 gi|345004850|ref|YP_004807703.1| - 3.5e-06 26.3 0.3 2.8e-05 23.3 0.2 1.9 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.1 gi|345004850|ref|YP_004807703.1| - 0.0052 16.5 0.0 0.0071 16.0 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family group 2 Glycos_transf_1 PF00534.15 gi|345004851|ref|YP_004807704.1| - 2.1e-20 72.8 0.0 3.1e-20 72.2 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|345004851|ref|YP_004807704.1| - 2.8e-09 37.2 0.0 5.2e-09 36.3 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|345004851|ref|YP_004807704.1| - 0.0034 17.1 0.2 0.0081 15.8 0.1 1.6 1 1 0 1 1 1 1 Glycosyltransferase Family 4 Phosphodiest PF01663.17 gi|345004852|ref|YP_004807705.1| - 1e-39 136.8 0.0 1.6e-39 136.3 0.0 1.2 1 0 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase Metalloenzyme PF01676.13 gi|345004852|ref|YP_004807705.1| - 0.017 14.5 0.0 0.12 11.6 0.1 2.0 2 0 0 2 2 2 0 Metalloenzyme superfamily Polysacc_deac_1 PF01522.16 gi|345004853|ref|YP_004807706.1| - 0.00033 20.2 0.0 0.00084 18.9 0.0 1.9 1 1 0 1 1 1 1 Polysaccharide deacetylase Glyco_trans_4_4 PF13579.1 gi|345004853|ref|YP_004807706.1| - 0.071 13.2 3.2 0.28 11.2 0.5 2.2 2 0 0 2 2 2 0 Glycosyl transferase 4-like domain Polysacc_deac_1 PF01522.16 gi|345004855|ref|YP_004807708.1| - 0.0003 20.4 0.1 0.00088 18.8 0.0 1.7 2 0 0 2 2 2 1 Polysaccharide deacetylase HTH_31 PF13560.1 gi|345004855|ref|YP_004807708.1| - 0.012 15.8 2.5 0.044 13.9 0.2 2.6 2 1 1 3 3 3 0 Helix-turn-helix domain Sulfatase PF00884.18 gi|345004856|ref|YP_004807709.1| - 1.4e-26 93.3 0.0 2.2e-26 92.7 0.0 1.2 1 0 0 1 1 1 1 Sulfatase Phosphodiest PF01663.17 gi|345004856|ref|YP_004807709.1| - 2.7e-07 30.2 0.1 5.3e-07 29.2 0.1 1.3 1 1 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase Sulfatase_C PF14707.1 gi|345004856|ref|YP_004807709.1| - 0.0017 18.6 0.1 0.14 12.4 0.0 2.3 2 0 0 2 2 2 1 C-terminal region of aryl-sulfatase DUF1501 PF07394.7 gi|345004856|ref|YP_004807709.1| - 0.023 13.5 0.0 0.036 12.8 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1501) DDE_Tnp_IS240 PF13610.1 gi|345004857|ref|YP_004807710.1| - 4.1e-16 59.2 0.1 5.4e-16 58.8 0.1 1.2 1 0 0 1 1 1 1 DDE domain rve PF00665.21 gi|345004857|ref|YP_004807710.1| - 7.6e-05 22.7 0.2 0.00011 22.2 0.2 1.3 1 0 0 1 1 1 1 Integrase core domain DDE_Tnp_IS66 PF03050.9 gi|345004857|ref|YP_004807710.1| - 0.0005 19.3 0.2 0.0015 17.8 0.2 1.8 1 1 0 1 1 1 1 Transposase IS66 family DDE_3 PF13358.1 gi|345004857|ref|YP_004807710.1| - 0.058 13.1 0.0 0.23 11.2 0.0 1.9 1 1 0 1 1 1 0 DDE superfamily endonuclease Polysacc_synt PF01943.12 gi|345004858|ref|YP_004807711.1| - 4.1e-23 82.0 15.4 4.1e-23 82.0 10.7 2.5 2 1 0 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt_C PF14667.1 gi|345004858|ref|YP_004807711.1| - 2.6e-14 53.2 20.8 2.6e-14 53.2 14.4 3.5 3 1 0 3 3 3 1 Polysaccharide biosynthesis C-terminal domain Polysacc_synt_3 PF13440.1 gi|345004858|ref|YP_004807711.1| - 5.5e-13 48.9 23.8 5.5e-13 48.9 16.5 3.1 2 1 0 3 3 3 1 Polysaccharide biosynthesis protein B12D PF06522.6 gi|345004858|ref|YP_004807711.1| - 0.053 13.2 0.3 0.2 11.4 0.2 2.0 1 0 0 1 1 1 0 NADH-ubiquinone reductase complex 1 MLRQ subunit Glycos_transf_1 PF00534.15 gi|345004859|ref|YP_004807712.1| - 2.5e-35 121.4 0.0 3.9e-35 120.7 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|345004859|ref|YP_004807712.1| - 4.5e-20 72.1 0.0 9.5e-20 71.1 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|345004859|ref|YP_004807712.1| - 1.1e-10 41.6 0.0 2.2e-10 40.6 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|345004859|ref|YP_004807712.1| - 3.1e-08 33.5 1.3 1.1e-07 31.7 0.9 1.8 1 1 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.1 gi|345004859|ref|YP_004807712.1| - 2.4e-07 31.0 7.7 5e-07 29.9 1.6 2.7 2 2 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_trans_4_2 PF13477.1 gi|345004859|ref|YP_004807712.1| - 0.00016 21.5 0.0 0.00028 20.7 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase 4-like SIS PF01380.17 gi|345004860|ref|YP_004807713.1| - 4.4e-41 139.5 0.0 1.4e-21 76.4 0.1 2.3 2 0 0 2 2 2 2 SIS domain GATase_6 PF13522.1 gi|345004860|ref|YP_004807713.1| - 1.3e-23 83.4 0.1 3.4e-23 82.0 0.1 1.7 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_7 PF13537.1 gi|345004860|ref|YP_004807713.1| - 7.4e-22 77.4 0.0 3e-21 75.4 0.0 2.0 2 0 0 2 2 2 1 Glutamine amidotransferase domain GATase_2 PF00310.16 gi|345004860|ref|YP_004807713.1| - 2.7e-20 72.3 0.0 9.1e-15 54.2 0.0 2.3 1 1 1 2 2 2 2 Glutamine amidotransferases class-II GATase_4 PF13230.1 gi|345004860|ref|YP_004807713.1| - 0.0015 17.3 0.0 0.0024 16.6 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferases class-II VirionAssem_T7 PF11653.3 gi|345004860|ref|YP_004807713.1| - 0.058 14.1 1.6 1.5 9.5 0.3 2.9 2 0 0 2 2 2 0 Bacteriophage T7 virion assembly protein VWA_2 PF13519.1 gi|345004860|ref|YP_004807713.1| - 0.1 12.6 0.6 3.8 7.5 0.0 2.9 1 1 1 2 2 2 0 von Willebrand factor type A domain NTP_transferase PF00483.18 gi|345004861|ref|YP_004807714.1| - 6.2e-43 146.8 0.0 7.8e-43 146.5 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase Hexapep PF00132.19 gi|345004861|ref|YP_004807714.1| - 1.1e-18 65.7 21.7 6e-07 28.6 0.1 4.2 2 1 1 3 3 3 3 Bacterial transferase hexapeptide (six repeats) NTP_transf_3 PF12804.2 gi|345004861|ref|YP_004807714.1| - 2.7e-14 53.5 0.0 3.8e-14 53.0 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep_2 PF14602.1 gi|345004861|ref|YP_004807714.1| - 2.3e-09 36.6 20.7 0.0018 17.8 0.2 4.7 2 1 3 5 5 5 3 Hexapeptide repeat of succinyl-transferase IspD PF01128.14 gi|345004861|ref|YP_004807714.1| - 0.00029 20.4 0.0 0.00092 18.7 0.0 1.8 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CTP_transf_3 PF02348.14 gi|345004861|ref|YP_004807714.1| - 0.0084 15.7 0.0 0.015 14.8 0.0 1.3 1 0 0 1 1 1 1 Cytidylyltransferase Fucokinase PF07959.7 gi|345004861|ref|YP_004807714.1| - 0.046 12.2 0.7 0.45 9.0 0.4 1.9 1 1 1 2 2 2 0 L-fucokinase Epimerase PF01370.16 gi|345004862|ref|YP_004807715.1| - 4.8e-35 121.0 0.0 6.3e-35 120.7 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.12 gi|345004862|ref|YP_004807715.1| - 1.1e-20 73.7 0.0 1.4e-20 73.3 0.0 1.0 1 0 0 1 1 1 1 RmlD substrate binding domain 3Beta_HSD PF01073.14 gi|345004862|ref|YP_004807715.1| - 1.8e-15 56.4 0.0 3e-15 55.6 0.0 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.10 gi|345004862|ref|YP_004807715.1| - 2.3e-12 46.4 0.0 1.1e-11 44.1 0.0 2.0 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_10 PF13460.1 gi|345004862|ref|YP_004807715.1| - 1.2e-10 41.6 0.9 1.1e-09 38.5 0.6 2.1 1 1 0 1 1 1 1 NADH(P)-binding NAD_binding_4 PF07993.7 gi|345004862|ref|YP_004807715.1| - 2.5e-10 39.6 0.0 2.2e-07 30.0 0.0 2.2 1 1 1 2 2 2 2 Male sterility protein NmrA PF05368.8 gi|345004862|ref|YP_004807715.1| - 0.00013 21.3 0.4 0.0005 19.4 0.2 1.9 2 0 0 2 2 2 1 NmrA-like family UDPG_MGDP_dh_N PF03721.9 gi|345004862|ref|YP_004807715.1| - 0.004 16.5 0.0 0.0072 15.7 0.0 1.4 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain TrkA_N PF02254.13 gi|345004862|ref|YP_004807715.1| - 0.086 12.8 0.1 0.17 11.8 0.1 1.4 1 0 0 1 1 1 0 TrkA-N domain Epimerase PF01370.16 gi|345004863|ref|YP_004807716.1| - 1.5e-49 168.5 0.1 1.8e-49 168.2 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|345004863|ref|YP_004807716.1| - 8.4e-29 100.1 0.0 1.1e-28 99.7 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_10 PF13460.1 gi|345004863|ref|YP_004807716.1| - 3.1e-21 76.1 0.2 4e-21 75.8 0.2 1.2 1 0 0 1 1 1 1 NADH(P)-binding RmlD_sub_bind PF04321.12 gi|345004863|ref|YP_004807716.1| - 3.3e-19 68.8 0.3 3.8e-19 68.6 0.2 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain NAD_binding_4 PF07993.7 gi|345004863|ref|YP_004807716.1| - 4.4e-11 42.1 0.3 1e-07 31.1 0.1 2.1 2 0 0 2 2 2 2 Male sterility protein Polysacc_synt_2 PF02719.10 gi|345004863|ref|YP_004807716.1| - 3.1e-10 39.4 0.0 5.7e-10 38.5 0.0 1.5 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein adh_short PF00106.20 gi|345004863|ref|YP_004807716.1| - 7.3e-10 39.0 1.0 1.2e-09 38.2 0.7 1.3 1 0 0 1 1 1 1 short chain dehydrogenase NmrA PF05368.8 gi|345004863|ref|YP_004807716.1| - 1.2e-09 37.8 0.0 2.5e-09 36.7 0.0 1.7 1 1 0 1 1 1 1 NmrA-like family KR PF08659.5 gi|345004863|ref|YP_004807716.1| - 0.00027 20.6 1.2 0.00088 18.9 0.9 1.8 1 1 0 1 1 1 1 KR domain DUF3834 PF12916.2 gi|345004863|ref|YP_004807716.1| - 0.012 14.5 0.1 0.021 13.8 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3834) Saccharop_dh PF03435.13 gi|345004863|ref|YP_004807716.1| - 0.049 12.6 0.2 0.064 12.2 0.2 1.2 1 0 0 1 1 1 0 Saccharopine dehydrogenase F420_oxidored PF03807.12 gi|345004863|ref|YP_004807716.1| - 0.068 13.6 0.3 1.2 9.5 0.0 2.8 2 1 1 3 3 3 0 NADP oxidoreductase coenzyme F420-dependent NAD_binding_8 PF13450.1 gi|345004863|ref|YP_004807716.1| - 0.1 12.6 0.2 1.4 9.0 0.0 2.3 2 0 0 2 2 2 0 NAD(P)-binding Rossmann-like domain Epimerase PF01370.16 gi|345004864|ref|YP_004807717.1| - 5.3e-23 81.6 0.0 8.8e-23 80.9 0.0 1.3 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family Polysacc_synt_2 PF02719.10 gi|345004864|ref|YP_004807717.1| - 8.9e-10 37.9 0.0 9.7e-05 21.3 0.0 2.2 2 0 0 2 2 2 2 Polysaccharide biosynthesis protein RmlD_sub_bind PF04321.12 gi|345004864|ref|YP_004807717.1| - 0.00027 19.9 0.0 0.0083 15.0 0.0 2.7 3 0 0 3 3 3 1 RmlD substrate binding domain KR PF08659.5 gi|345004864|ref|YP_004807717.1| - 0.00086 19.0 0.0 0.0013 18.4 0.0 1.2 1 0 0 1 1 1 1 KR domain adh_short PF00106.20 gi|345004864|ref|YP_004807717.1| - 0.0011 18.9 0.0 0.002 18.0 0.0 1.4 1 0 0 1 1 1 1 short chain dehydrogenase TrmB PF01978.14 gi|345004865|ref|YP_004807718.1| - 1.1e-16 60.3 0.0 2.2e-16 59.3 0.0 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.5 gi|345004865|ref|YP_004807718.1| - 0.00063 19.2 0.0 0.0014 18.1 0.0 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain Rrf2 PF02082.15 gi|345004865|ref|YP_004807718.1| - 0.0034 17.4 0.0 0.0063 16.6 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulator Regulator_TrmB PF11495.3 gi|345004865|ref|YP_004807718.1| - 0.0042 16.0 0.0 0.16 10.9 0.1 2.3 1 1 0 2 2 2 1 Archaeal transcriptional regulator TrmB MarR_2 PF12802.2 gi|345004865|ref|YP_004807718.1| - 0.0079 15.8 0.1 0.03 14.0 0.0 2.0 2 0 0 2 2 2 1 MarR family DUF2110 PF09883.4 gi|345004865|ref|YP_004807718.1| - 0.038 13.6 0.0 2.4 7.7 0.0 2.2 1 1 1 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2110) DUF3542 PF12061.3 gi|345004865|ref|YP_004807718.1| - 0.04 12.9 0.0 0.057 12.3 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3542) HTH_34 PF13601.1 gi|345004865|ref|YP_004807718.1| - 0.043 13.8 0.0 0.082 12.9 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_27 PF13463.1 gi|345004865|ref|YP_004807718.1| - 0.083 13.2 0.0 0.23 11.7 0.0 1.8 2 0 0 2 2 2 0 Winged helix DNA-binding domain STT3 PF02516.9 gi|345004867|ref|YP_004807720.1| - 1.6e-24 86.7 9.9 1.6e-24 86.7 6.9 3.1 2 1 1 3 3 3 1 Oligosaccharyl transferase STT3 subunit PMT_2 PF13231.1 gi|345004867|ref|YP_004807720.1| - 0.00057 19.8 2.1 0.00057 19.8 1.5 4.9 3 2 1 4 4 4 1 Dolichyl-phosphate-mannose-protein mannosyltransferase DUF368 PF04018.8 gi|345004868|ref|YP_004807721.1| - 1.6e-65 220.8 10.5 1.6e-65 220.8 7.3 1.3 1 1 0 1 1 1 1 Domain of unknown function (DUF368) DUF2374 PF09574.5 gi|345004868|ref|YP_004807721.1| - 0.082 12.5 11.6 0.22 11.1 0.5 3.3 3 0 0 3 3 3 0 Protein of unknown function (Duf2374) tRNA-synt_2b PF00587.20 gi|345004869|ref|YP_004807722.1| - 4.4e-36 124.0 0.1 7.8e-36 123.2 0.1 1.4 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.15 gi|345004869|ref|YP_004807722.1| - 2.5e-14 53.0 0.0 6.1e-14 51.7 0.0 1.7 1 0 0 1 1 1 1 Anticodon binding domain tRNA_SAD PF07973.9 gi|345004869|ref|YP_004807722.1| - 8.8e-12 44.7 0.0 1.7e-11 43.8 0.0 1.5 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain TGS PF02824.16 gi|345004869|ref|YP_004807722.1| - 1.4e-11 44.0 0.2 3e-11 42.9 0.1 1.6 1 0 0 1 1 1 1 TGS domain tRNA-synt_His PF13393.1 gi|345004869|ref|YP_004807722.1| - 0.0057 15.7 0.0 0.018 14.0 0.0 1.9 2 0 0 2 2 2 1 Histidyl-tRNA synthetase VWA_3 PF13768.1 gi|345004869|ref|YP_004807722.1| - 0.07 12.8 0.1 0.16 11.6 0.0 1.6 2 0 0 2 2 2 0 von Willebrand factor type A domain DUF4401 PF14351.1 gi|345004870|ref|YP_004807723.1| - 0.0087 15.0 5.8 0.011 14.6 4.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4401) RskA PF10099.4 gi|345004870|ref|YP_004807723.1| - 0.12 12.1 10.9 0.39 10.4 1.0 2.7 3 0 0 3 3 3 0 Anti-sigma-K factor rskA Ceramidase PF05875.7 gi|345004870|ref|YP_004807723.1| - 0.14 11.2 0.3 0.23 10.5 0.2 1.4 1 0 0 1 1 1 0 Ceramidase ExoD PF06055.7 gi|345004870|ref|YP_004807723.1| - 0.43 9.6 7.1 0.15 11.1 2.6 1.9 2 0 0 2 2 2 0 Exopolysaccharide synthesis, ExoD PIRT PF15099.1 gi|345004870|ref|YP_004807723.1| - 0.51 9.5 5.5 2.2 7.4 0.1 2.3 1 1 1 2 2 2 0 Phosphoinositide-interacting protein family DUF4149 PF13664.1 gi|345004870|ref|YP_004807723.1| - 4.3 7.4 7.9 28 4.8 0.2 2.7 1 1 0 2 2 2 0 Domain of unknown function (DUF4149) TMEM107 PF14995.1 gi|345004870|ref|YP_004807723.1| - 6.6 6.8 7.9 2.1 8.4 0.3 2.4 2 1 1 3 3 3 0 Transmembrane protein DUF4131 PF13567.1 gi|345004870|ref|YP_004807723.1| - 8.9 5.6 9.5 4.6 6.6 3.4 2.4 1 1 1 2 2 2 0 Domain of unknown function (DUF4131) FAD-oxidase_C PF02913.14 gi|345004871|ref|YP_004807724.1| - 4.6e-57 193.1 0.8 4.6e-57 193.1 0.6 1.9 2 0 0 2 2 2 1 FAD linked oxidases, C-terminal domain FAD_binding_4 PF01565.18 gi|345004871|ref|YP_004807724.1| - 1e-40 138.4 1.1 2e-40 137.4 0.8 1.5 1 0 0 1 1 1 1 FAD binding domain Fer4_17 PF13534.1 gi|345004871|ref|YP_004807724.1| - 1.6e-09 37.9 3.0 3.1e-09 37.0 2.1 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|345004871|ref|YP_004807724.1| - 7.7e-09 35.4 4.5 1.8e-08 34.3 3.1 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain CCG PF02754.11 gi|345004871|ref|YP_004807724.1| - 6.5e-07 29.2 2.0 6.8e-05 22.8 0.1 2.9 3 0 0 3 3 2 1 Cysteine-rich domain Fer4_7 PF12838.2 gi|345004871|ref|YP_004807724.1| - 0.00015 22.0 4.5 0.00038 20.7 3.1 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|345004871|ref|YP_004807724.1| - 0.00018 21.2 9.1 0.026 14.4 1.0 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.1 gi|345004871|ref|YP_004807724.1| - 0.00045 20.5 5.5 0.0018 18.6 2.6 2.4 1 1 1 2 2 2 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|345004871|ref|YP_004807724.1| - 0.00069 19.4 3.6 0.034 13.9 0.2 2.5 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|345004871|ref|YP_004807724.1| - 0.0031 17.2 9.1 0.035 13.8 0.8 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.22 gi|345004871|ref|YP_004807724.1| - 0.0079 15.7 12.4 0.048 13.2 2.3 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|345004871|ref|YP_004807724.1| - 0.016 15.4 8.5 0.063 13.5 1.3 2.4 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|345004871|ref|YP_004807724.1| - 0.24 11.8 12.2 0.21 12.0 1.8 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_6 PF12837.2 gi|345004871|ref|YP_004807724.1| - 0.24 11.3 10.7 1.1 9.2 1.5 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_15 PF13459.1 gi|345004871|ref|YP_004807724.1| - 0.71 10.4 13.7 0.86 10.2 0.2 4.8 4 0 0 4 4 4 0 4Fe-4S single cluster domain Aminotran_5 PF00266.14 gi|345004872|ref|YP_004807725.1| - 4.4e-34 117.8 0.0 5.8e-34 117.4 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.15 gi|345004872|ref|YP_004807725.1| - 0.00018 19.9 0.0 0.00025 19.4 0.0 1.1 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme DegT_DnrJ_EryC1 PF01041.12 gi|345004872|ref|YP_004807725.1| - 0.032 13.2 1.8 0.056 12.4 1.2 1.3 1 0 0 1 1 1 0 DegT/DnrJ/EryC1/StrS aminotransferase family OKR_DC_1 PF01276.15 gi|345004872|ref|YP_004807725.1| - 0.12 10.9 0.0 0.18 10.3 0.0 1.1 1 0 0 1 1 1 0 Orn/Lys/Arg decarboxylase, major domain BofA PF07441.6 gi|345004873|ref|YP_004807726.1| - 4.6e-08 32.9 14.0 6.1e-08 32.5 9.7 1.2 1 0 0 1 1 1 1 SigmaK-factor processing regulatory protein BofA ALMT PF11744.3 gi|345004873|ref|YP_004807726.1| - 0.84 8.2 3.0 0.84 8.2 2.1 1.1 1 0 0 1 1 1 0 Aluminium activated malate transporter TcpE PF12648.2 gi|345004873|ref|YP_004807726.1| - 8.9 6.5 6.5 9.8 6.3 4.1 1.4 1 1 0 1 1 1 0 TcpE family PTPS PF01242.14 gi|345004875|ref|YP_004807728.1| - 8.4e-22 77.1 0.0 1.1e-21 76.7 0.0 1.1 1 0 0 1 1 1 1 6-pyruvoyl tetrahydropterin synthase Radical_SAM PF04055.16 gi|345004876|ref|YP_004807729.1| - 2.1e-28 99.5 0.2 3.9e-28 98.6 0.1 1.5 1 1 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|345004876|ref|YP_004807729.1| - 1.7e-18 66.7 0.0 3.2e-18 65.8 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|345004876|ref|YP_004807729.1| - 2.8e-12 46.9 0.0 5.7e-12 45.9 0.0 1.5 2 0 0 2 2 2 1 4Fe-4S single cluster domain QueC PF06508.8 gi|345004877|ref|YP_004807730.1| - 1.8e-68 229.9 0.0 2e-68 229.7 0.0 1.0 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC Asn_synthase PF00733.16 gi|345004877|ref|YP_004807730.1| - 0.0022 17.5 0.2 0.0035 16.8 0.1 1.2 1 0 0 1 1 1 1 Asparagine synthase ThiI PF02568.9 gi|345004877|ref|YP_004807730.1| - 0.0031 16.9 0.0 0.01 15.3 0.0 1.9 2 1 0 2 2 2 1 Thiamine biosynthesis protein (ThiI) tRNA_Me_trans PF03054.11 gi|345004877|ref|YP_004807730.1| - 0.02 13.4 0.0 0.029 12.9 0.0 1.1 1 0 0 1 1 1 0 tRNA methyl transferase MFS_1 PF07690.11 gi|345004878|ref|YP_004807731.1| - 1.3e-22 80.0 55.8 6.6e-18 64.5 23.9 3.1 1 1 1 2 2 2 2 Major Facilitator Superfamily Bac_luciferase PF00296.15 gi|345004879|ref|YP_004807732.1| - 7.5e-73 245.3 9.2 1e-72 244.8 6.4 1.0 1 0 0 1 1 1 1 Luciferase-like monooxygenase Big_3_4 PF13754.1 gi|345004880|ref|YP_004807733.1| - 0.0021 18.3 4.0 0.0021 18.3 2.8 2.8 1 1 1 2 2 2 1 Bacterial Ig-like domain (group 3) FAD_binding_7 PF03441.9 gi|345004881|ref|YP_004807734.1| - 4.2e-97 324.6 2.2 5.4e-97 324.3 1.6 1.1 1 0 0 1 1 1 1 FAD binding domain of DNA photolyase DNA_photolyase PF00875.13 gi|345004881|ref|YP_004807734.1| - 1.9e-50 170.8 0.5 5.1e-50 169.4 0.1 1.9 2 0 0 2 2 2 1 DNA photolyase zf-TFIIB PF13453.1 gi|345004882|ref|YP_004807735.1| - 0.0031 16.6 0.8 0.0062 15.7 0.6 1.4 1 1 0 1 1 1 1 Transcription factor zinc-finger zinc-ribbons_6 PF07191.7 gi|345004882|ref|YP_004807735.1| - 0.0077 15.9 0.2 2.2 8.1 0.0 2.1 2 0 0 2 2 2 2 zinc-ribbons DUF3268 PF11672.3 gi|345004882|ref|YP_004807735.1| - 0.017 15.2 0.1 0.02 14.9 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3268) Zn-ribbon_8 PF09723.5 gi|345004882|ref|YP_004807735.1| - 0.024 14.5 0.9 1.6 8.7 0.1 2.1 2 0 0 2 2 2 0 Zinc ribbon domain zf-LITAF-like PF10601.4 gi|345004882|ref|YP_004807735.1| - 0.028 14.2 0.6 0.98 9.3 0.1 2.1 2 0 0 2 2 2 0 LITAF-like zinc ribbon domain DZR PF12773.2 gi|345004882|ref|YP_004807735.1| - 0.038 13.8 1.6 0.64 9.8 1.2 2.0 1 1 0 1 1 1 0 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|345004882|ref|YP_004807735.1| - 0.048 12.8 0.2 6.5 6.0 0.0 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Terminase_GpA PF05876.7 gi|345004882|ref|YP_004807735.1| - 0.048 12.0 0.4 0.054 11.8 0.3 1.0 1 0 0 1 1 1 0 Phage terminase large subunit (GpA) zf-NADH-PPase PF09297.6 gi|345004882|ref|YP_004807735.1| - 0.057 12.9 0.7 4.5 6.8 0.0 2.3 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|345004882|ref|YP_004807735.1| - 0.076 12.8 4.0 0.27 11.0 2.9 1.7 1 1 0 1 1 1 0 Transposase zinc-ribbon domain zf-C3HC4_3 PF13920.1 gi|345004882|ref|YP_004807735.1| - 0.086 12.5 0.2 0.13 11.9 0.2 1.3 1 1 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) LIM PF00412.17 gi|345004882|ref|YP_004807735.1| - 0.088 12.8 0.1 0.11 12.5 0.1 1.2 1 0 0 1 1 1 0 LIM domain UPF0547 PF10571.4 gi|345004882|ref|YP_004807735.1| - 0.091 12.4 4.1 0.61 9.8 2.9 2.0 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 DUF2296 PF10058.4 gi|345004882|ref|YP_004807735.1| - 0.19 11.4 0.7 0.68 9.7 0.0 1.9 2 0 0 2 2 2 0 Predicted integral membrane metal-binding protein (DUF2296) Rubredoxin PF00301.15 gi|345004882|ref|YP_004807735.1| - 0.21 11.4 1.9 3.3 7.6 0.5 2.2 2 0 0 2 2 2 0 Rubredoxin zf-MIZ PF02891.15 gi|345004882|ref|YP_004807735.1| - 0.28 10.7 0.3 0.28 10.7 0.2 2.0 2 0 0 2 2 2 0 MIZ/SP-RING zinc finger zf-HYPF PF07503.7 gi|345004882|ref|YP_004807735.1| - 0.37 10.2 2.4 1.2 8.6 0.1 2.0 2 0 0 2 2 2 0 HypF finger DUF164 PF02591.10 gi|345004882|ref|YP_004807735.1| - 0.84 9.5 4.0 24 4.8 3.2 2.0 1 1 1 2 2 2 0 Putative zinc ribbon domain zf-RanBP PF00641.13 gi|345004882|ref|YP_004807735.1| - 1.5 7.9 6.3 0.43 9.7 0.8 2.1 2 0 0 2 2 2 0 Zn-finger in Ran binding protein and others zf-RING_3 PF14369.1 gi|345004882|ref|YP_004807735.1| - 2.3 8.2 5.7 36 4.4 0.4 2.1 1 1 1 2 2 2 0 zinc-finger DUF4066 PF13278.1 gi|345004883|ref|YP_004807736.1| - 2.3e-35 121.2 0.1 2.7e-35 121.0 0.0 1.0 1 0 0 1 1 1 1 Putative amidotransferase DJ-1_PfpI PF01965.19 gi|345004883|ref|YP_004807736.1| - 5.1e-15 55.2 0.0 7.9e-15 54.5 0.0 1.3 1 0 0 1 1 1 1 DJ-1/PfpI family GATase_3 PF07685.9 gi|345004883|ref|YP_004807736.1| - 0.015 14.8 0.0 0.022 14.3 0.0 1.4 1 0 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain MFS_1 PF07690.11 gi|345004884|ref|YP_004807737.1| - 4.3e-33 114.5 73.3 2.1e-26 92.4 29.7 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Sod_Fe_C PF02777.13 gi|345004885|ref|YP_004807738.1| - 2.6e-36 123.6 0.1 4.8e-36 122.8 0.1 1.4 1 0 0 1 1 1 1 Iron/manganese superoxide dismutases, C-terminal domain Sod_Fe_N PF00081.17 gi|345004885|ref|YP_004807738.1| - 3.3e-32 110.5 0.6 6.3e-32 109.6 0.4 1.5 1 0 0 1 1 1 1 Iron/manganese superoxide dismutases, alpha-hairpin domain Thy1 PF02511.10 gi|345004887|ref|YP_004807740.1| - 1.1e-56 191.2 0.0 1.3e-56 190.9 0.0 1.0 1 0 0 1 1 1 1 Thymidylate synthase complementing protein Replicase PF03090.12 gi|345004887|ref|YP_004807740.1| - 0.089 12.6 0.0 0.18 11.6 0.0 1.5 1 0 0 1 1 1 0 Replicase family Glyoxalase PF00903.20 gi|345004888|ref|YP_004807741.1| - 2.6e-26 92.0 0.2 8.8e-25 87.1 0.2 2.9 1 1 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_2 PF12681.2 gi|345004888|ref|YP_004807741.1| - 1.7e-09 38.2 2.2 5.8e-05 23.6 0.2 2.7 2 1 1 3 3 3 2 Glyoxalase-like domain Glyoxalase_4 PF13669.1 gi|345004888|ref|YP_004807741.1| - 4.8e-07 29.7 0.2 0.037 14.0 0.0 3.2 3 0 0 3 3 3 3 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily SNase PF00565.12 gi|345004889|ref|YP_004807742.1| - 8.7e-21 74.2 0.0 1.7e-20 73.2 0.0 1.5 1 0 0 1 1 1 1 Staphylococcal nuclease homologue LTD PF00932.14 gi|345004889|ref|YP_004807742.1| - 4.2e-19 68.7 1.6 1.1e-18 67.3 0.9 1.8 2 0 0 2 2 2 1 Lamin Tail Domain LPAM_1 PF08139.7 gi|345004889|ref|YP_004807742.1| - 0.2 11.9 1.8 0.34 11.2 1.2 1.4 1 0 0 1 1 1 0 Prokaryotic membrane lipoprotein lipid attachment site Myosin_N PF02736.14 gi|345004889|ref|YP_004807742.1| - 3.1 7.5 6.4 7.9 6.2 0.1 3.4 4 0 0 4 4 4 0 Myosin N-terminal SH3-like domain Molybdopterin PF00384.17 gi|345004891|ref|YP_004807744.1| - 7.7e-79 265.4 0.0 9.5e-79 265.1 0.0 1.1 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.16 gi|345004891|ref|YP_004807744.1| - 6.3e-34 116.1 0.1 1.3e-33 115.0 0.1 1.6 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Fer2_4 PF13510.1 gi|345004891|ref|YP_004807744.1| - 9.1e-20 70.2 2.8 2.1e-19 69.1 1.9 1.7 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain NADH-G_4Fe-4S_3 PF10588.4 gi|345004891|ref|YP_004807744.1| - 2.1e-13 49.2 0.3 2.1e-13 49.2 0.2 2.1 2 0 0 2 2 1 1 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region Molybdop_Fe4S4 PF04879.11 gi|345004891|ref|YP_004807744.1| - 3.3e-12 46.0 0.2 3.3e-12 46.0 0.1 2.2 2 0 0 2 2 1 1 Molybdopterin oxidoreductase Fe4S4 domain Fer4_21 PF14697.1 gi|345004891|ref|YP_004807744.1| - 3.3e-08 33.2 8.8 3.3e-08 33.2 6.1 3.0 4 0 0 4 4 3 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|345004891|ref|YP_004807744.1| - 8.3e-08 32.4 9.1 8.3e-08 32.4 6.3 3.9 3 1 0 3 3 3 1 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|345004891|ref|YP_004807744.1| - 1e-06 28.6 21.1 2.9e-06 27.2 5.3 3.6 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|345004891|ref|YP_004807744.1| - 1.1e-06 28.3 11.3 1.1e-06 28.3 7.8 4.2 4 2 1 5 5 5 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|345004891|ref|YP_004807744.1| - 7.6e-06 25.5 12.7 3.6e-05 23.4 1.5 3.8 5 0 0 5 5 4 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|345004891|ref|YP_004807744.1| - 9.9e-06 25.7 10.4 9.9e-06 25.7 7.2 3.9 2 1 1 3 3 3 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|345004891|ref|YP_004807744.1| - 4.4e-05 22.8 14.4 0.0007 19.0 2.1 3.9 4 0 0 4 4 4 2 4Fe-4S binding domain Fer2 PF00111.22 gi|345004891|ref|YP_004807744.1| - 0.00027 20.5 2.6 0.00027 20.5 1.8 2.5 2 1 0 2 2 2 1 2Fe-2S iron-sulfur cluster binding domain Fer4_2 PF12797.2 gi|345004891|ref|YP_004807744.1| - 0.00036 20.2 2.2 0.00036 20.2 1.5 4.9 5 0 0 5 5 5 2 4Fe-4S binding domain Fer4_18 PF13746.1 gi|345004891|ref|YP_004807744.1| - 0.0016 18.8 17.8 0.017 15.4 0.4 3.6 3 1 0 3 3 3 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|345004891|ref|YP_004807744.1| - 0.0019 18.9 0.3 0.0019 18.9 0.2 4.1 5 0 0 5 5 3 2 4Fe-4S double cluster binding domain Fer4_15 PF13459.1 gi|345004891|ref|YP_004807744.1| - 0.0027 18.2 14.5 0.032 14.8 1.0 4.4 4 0 0 4 4 3 2 4Fe-4S single cluster domain Fer4_17 PF13534.1 gi|345004891|ref|YP_004807744.1| - 0.095 13.0 0.3 0.095 13.0 0.2 4.4 3 1 1 4 4 4 0 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|345004891|ref|YP_004807744.1| - 0.17 12.2 16.8 0.88 10.0 2.4 3.8 3 0 0 3 3 3 0 4Fe-4S single cluster domain Complex1_51K PF01512.12 gi|345004892|ref|YP_004807745.1| - 5.4e-17 61.9 0.0 8e-17 61.3 0.0 1.3 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase 51 Kd subunit NADH_4Fe-4S PF10589.4 gi|345004892|ref|YP_004807745.1| - 9.6e-11 40.6 0.1 2.2e-10 39.4 0.1 1.6 1 0 0 1 1 1 1 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region SLBB PF10531.4 gi|345004892|ref|YP_004807745.1| - 0.00021 21.1 2.4 0.00045 20.0 0.1 2.4 2 0 0 2 2 2 1 SLBB domain NTP_transf_3 PF12804.2 gi|345004893|ref|YP_004807746.1| - 5.4e-33 114.3 0.1 7.3e-33 113.9 0.1 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain Polysacc_deac_1 PF01522.16 gi|345004895|ref|YP_004807748.1| - 3.7e-23 81.4 0.0 5.3e-23 80.9 0.0 1.2 1 0 0 1 1 1 1 Polysaccharide deacetylase Mem_trans PF03547.13 gi|345004896|ref|YP_004807749.1| - 0.01 14.1 0.0 0.01 14.1 0.0 1.1 1 0 0 1 1 1 0 Membrane transport protein NfeD PF01957.13 gi|345004896|ref|YP_004807749.1| - 0.21 11.6 5.5 0.13 12.4 2.6 1.6 1 1 0 1 1 1 0 NfeD-like C-terminal, partner-binding DUF1772 PF08592.6 gi|345004896|ref|YP_004807749.1| - 1.5 8.5 6.1 0.99 9.1 3.0 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF1772) CTV_P6 PF06706.6 gi|345004896|ref|YP_004807749.1| - 9.8 5.7 9.2 0.45 10.0 0.2 2.6 3 0 0 3 3 3 0 Citrus tristeza virus 6-kDa protein Proteasome PF00227.21 gi|345004897|ref|YP_004807750.1| - 1.2e-46 158.4 0.0 1.5e-46 158.0 0.0 1.2 1 0 0 1 1 1 1 Proteasome subunit Proteasome_A_N PF10584.4 gi|345004897|ref|YP_004807750.1| - 1.7e-12 46.3 0.2 2.9e-12 45.6 0.1 1.4 1 0 0 1 1 1 1 Proteasome subunit A N-terminal signature Amidohydro_1 PF01979.15 gi|345004898|ref|YP_004807751.1| - 2.2e-46 159.0 8.6 2.8e-46 158.7 6.0 1.0 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_4 PF13147.1 gi|345004898|ref|YP_004807751.1| - 4.8e-21 75.9 14.1 7.8e-19 68.7 9.8 2.3 1 1 0 1 1 1 1 Amidohydrolase Amidohydro_5 PF13594.1 gi|345004898|ref|YP_004807751.1| - 1.7e-14 53.3 3.1 2.4e-14 52.8 0.5 2.6 2 0 0 2 2 2 1 Amidohydrolase Amidohydro_3 PF07969.6 gi|345004898|ref|YP_004807751.1| - 3.8e-11 42.8 24.8 1.2e-10 41.2 11.4 3.2 1 1 1 2 2 2 2 Amidohydrolase family DJ-1_PfpI PF01965.19 gi|345004898|ref|YP_004807751.1| - 0.018 14.4 1.4 0.074 12.5 0.7 2.0 1 1 1 2 2 2 0 DJ-1/PfpI family Urease_alpha PF00449.15 gi|345004898|ref|YP_004807751.1| - 0.075 13.1 0.8 0.13 12.3 0.1 1.7 2 0 0 2 2 2 0 Urease alpha-subunit, N-terminal domain Ferritin_2 PF13668.1 gi|345004899|ref|YP_004807752.1| - 1.6e-38 131.7 0.4 7.4e-38 129.5 0.4 1.7 2 0 0 2 2 2 1 Ferritin-like domain UCR_Fe-S_N PF10399.4 gi|345004899|ref|YP_004807752.1| - 0.11 11.7 0.1 0.26 10.4 0.1 1.7 1 0 0 1 1 1 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal Ferritin_2 PF13668.1 gi|345004900|ref|YP_004807753.1| - 1.3e-37 128.7 1.8 1.7e-37 128.4 1.3 1.1 1 0 0 1 1 1 1 Ferritin-like domain DDE_Tnp_IS66 PF03050.9 gi|345004901|ref|YP_004807754.1| - 3e-53 180.8 0.2 3e-53 180.8 0.1 1.8 2 0 0 2 2 2 1 Transposase IS66 family Atg14 PF10186.4 gi|345004901|ref|YP_004807754.1| - 0.00026 20.0 1.8 0.00055 18.9 1.3 1.5 1 0 0 1 1 1 1 UV radiation resistance protein and autophagy-related subunit 14 SlyX PF04102.7 gi|345004901|ref|YP_004807754.1| - 0.00064 20.0 4.5 0.0017 18.6 3.1 1.8 1 0 0 1 1 1 1 SlyX DASH_Spc34 PF08657.5 gi|345004901|ref|YP_004807754.1| - 0.0012 18.5 3.2 0.0026 17.4 2.2 1.6 1 0 0 1 1 1 1 DASH complex subunit Spc34 IncA PF04156.9 gi|345004901|ref|YP_004807754.1| - 0.0033 17.0 4.1 0.0033 17.0 2.9 1.7 2 0 0 2 2 1 1 IncA protein Fmp27_WPPW PF10359.4 gi|345004901|ref|YP_004807754.1| - 0.0039 15.6 2.7 0.0055 15.1 1.9 1.1 1 0 0 1 1 1 1 RNA pol II promoter Fmp27 protein domain DUF869 PF05911.6 gi|345004901|ref|YP_004807754.1| - 0.0053 15.0 1.3 0.0072 14.6 0.9 1.1 1 0 0 1 1 1 1 Plant protein of unknown function (DUF869) ATG16 PF08614.6 gi|345004901|ref|YP_004807754.1| - 0.0068 16.2 8.4 0.015 15.1 5.8 1.5 1 0 0 1 1 1 1 Autophagy protein 16 (ATG16) DUF16 PF01519.11 gi|345004901|ref|YP_004807754.1| - 0.016 15.4 3.3 0.036 14.2 2.3 1.5 1 0 0 1 1 1 0 Protein of unknown function DUF16 DUF3584 PF12128.3 gi|345004901|ref|YP_004807754.1| - 0.022 12.1 5.7 0.032 11.5 4.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) DDE_Tnp_IS240 PF13610.1 gi|345004901|ref|YP_004807754.1| - 0.042 13.8 3.6 0.52 10.2 0.1 2.6 2 1 0 2 2 2 0 DDE domain Exonuc_VII_L PF02601.10 gi|345004901|ref|YP_004807754.1| - 0.099 11.8 1.2 0.17 11.0 0.8 1.3 1 0 0 1 1 1 0 Exonuclease VII, large subunit DUF4446 PF14584.1 gi|345004901|ref|YP_004807754.1| - 0.1 12.4 2.7 0.2 11.4 1.9 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF4446) AAA_13 PF13166.1 gi|345004901|ref|YP_004807754.1| - 0.11 10.8 4.6 0.17 10.2 3.2 1.1 1 0 0 1 1 1 0 AAA domain DUF1664 PF07889.7 gi|345004901|ref|YP_004807754.1| - 0.12 12.2 2.1 0.21 11.3 1.5 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1664) AAA_23 PF13476.1 gi|345004901|ref|YP_004807754.1| - 0.12 12.6 6.7 0.24 11.7 4.6 1.4 1 0 0 1 1 1 0 AAA domain TMF_DNA_bd PF12329.3 gi|345004901|ref|YP_004807754.1| - 0.23 11.2 11.8 0.62 9.9 8.2 1.7 1 0 0 1 1 1 0 TATA element modulatory factor 1 DNA binding UPF0449 PF15136.1 gi|345004901|ref|YP_004807754.1| - 0.23 11.6 10.4 0.31 11.2 3.2 2.6 2 0 0 2 2 2 0 Uncharacterised protein family UPF0449 DUF3186 PF11382.3 gi|345004901|ref|YP_004807754.1| - 0.26 10.4 0.9 0.4 9.7 0.7 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3186) HSBP1 PF06825.7 gi|345004901|ref|YP_004807754.1| - 0.31 10.6 4.9 2.2 7.9 1.2 2.4 2 0 0 2 2 2 0 Heat shock factor binding protein 1 Fzo_mitofusin PF04799.8 gi|345004901|ref|YP_004807754.1| - 0.67 9.3 2.6 1.2 8.4 1.8 1.3 1 0 0 1 1 1 0 fzo-like conserved region V_ATPase_I PF01496.14 gi|345004901|ref|YP_004807754.1| - 0.7 7.6 4.2 1 7.1 2.9 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family Synaptobrevin PF00957.16 gi|345004901|ref|YP_004807754.1| - 0.96 9.1 3.2 1.9 8.1 2.2 1.4 1 0 0 1 1 1 0 Synaptobrevin Mnd1 PF03962.10 gi|345004901|ref|YP_004807754.1| - 1.3 8.6 8.4 0.9 9.1 4.4 1.7 2 0 0 2 2 2 0 Mnd1 family TMPIT PF07851.8 gi|345004901|ref|YP_004807754.1| - 1.3 8.0 2.9 2.5 7.0 2.0 1.4 1 0 0 1 1 1 0 TMPIT-like protein DUF3450 PF11932.3 gi|345004901|ref|YP_004807754.1| - 1.5 8.0 11.0 0.3 10.3 4.8 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF3450) XhlA PF10779.4 gi|345004901|ref|YP_004807754.1| - 1.6 8.7 10.1 3.7 7.5 7.0 1.6 1 0 0 1 1 1 0 Haemolysin XhlA DUF972 PF06156.8 gi|345004901|ref|YP_004807754.1| - 2.1 8.7 8.7 1 9.7 4.2 1.8 2 0 0 2 2 1 0 Protein of unknown function (DUF972) FemAB PF02388.11 gi|345004901|ref|YP_004807754.1| - 2.2 6.9 4.6 3.3 6.2 3.2 1.1 1 0 0 1 1 1 0 FemAB family DUF3552 PF12072.3 gi|345004901|ref|YP_004807754.1| - 2.4 7.3 20.3 0.03 13.5 7.9 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF3552) Daxx PF03344.10 gi|345004901|ref|YP_004807754.1| - 4.3 5.6 13.9 6.4 5.1 9.7 1.1 1 0 0 1 1 1 0 Daxx Family Spc7 PF08317.6 gi|345004901|ref|YP_004807754.1| - 4.8 5.7 13.1 0.22 10.1 5.0 1.6 2 0 0 2 2 2 0 Spc7 kinetochore protein Vma12 PF11712.3 gi|345004902|ref|YP_004807755.1| - 0.15 11.7 0.9 0.26 11.0 0.6 1.4 1 0 0 1 1 1 0 Endoplasmic reticulum-based factor for assembly of V-ATPase 2TM PF13239.1 gi|345004902|ref|YP_004807755.1| - 9.7 6.3 7.4 1.3 9.1 2.2 1.7 1 1 1 2 2 2 0 2TM domain Intg_mem_TP0381 PF09529.5 gi|345004903|ref|YP_004807756.1| - 0.13 11.5 3.0 0.62 9.2 1.0 2.1 1 1 0 2 2 2 0 Integral membrane protein (intg_mem_TP0381) DUF2427 PF10348.4 gi|345004903|ref|YP_004807756.1| - 0.69 9.5 4.5 5.6 6.6 0.6 2.4 2 1 0 2 2 2 0 Domain of unknown function (DUF2427) PMP1_2 PF08114.6 gi|345004903|ref|YP_004807756.1| - 2.2 7.8 0.0 2.2 7.8 0.0 3.2 3 1 0 3 3 3 0 ATPase proteolipid family DUF4013 PF13197.1 gi|345004903|ref|YP_004807756.1| - 3.2 7.0 17.1 2.6 7.3 8.8 2.3 2 1 0 2 2 2 0 Protein of unknown function (DUF4013) DUF2207 PF09972.4 gi|345004903|ref|YP_004807756.1| - 4 5.9 4.6 6.3 5.2 3.2 1.4 1 1 0 1 1 1 0 Predicted membrane protein (DUF2207) zf-ribbon_3 PF13248.1 gi|345004905|ref|YP_004807758.1| - 0.00055 19.0 0.1 0.00094 18.3 0.1 1.4 1 0 0 1 1 1 1 zinc-ribbon domain zf-C2H2_4 PF13894.1 gi|345004905|ref|YP_004807758.1| - 0.0022 18.1 0.8 0.0042 17.3 0.6 1.4 1 0 0 1 1 1 1 C2H2-type zinc finger zinc_ribbon_2 PF13240.1 gi|345004905|ref|YP_004807758.1| - 0.0024 17.3 0.1 0.0039 16.6 0.0 1.3 1 0 0 1 1 1 1 zinc-ribbon domain zf-Di19 PF05605.7 gi|345004905|ref|YP_004807758.1| - 0.0031 17.5 0.3 0.0044 17.1 0.2 1.4 1 1 0 1 1 1 1 Drought induced 19 protein (Di19), zinc-binding DZR PF12773.2 gi|345004905|ref|YP_004807758.1| - 0.029 14.1 0.0 0.035 13.9 0.0 1.2 1 0 0 1 1 1 0 Double zinc ribbon Rad50_zn_hook PF04423.9 gi|345004905|ref|YP_004807758.1| - 0.041 13.3 0.5 0.064 12.7 0.0 1.5 2 0 0 2 2 2 0 Rad50 zinc hook motif zf-C2H2_jaz PF12171.3 gi|345004905|ref|YP_004807758.1| - 0.06 13.5 0.0 0.11 12.6 0.0 1.4 1 0 0 1 1 1 0 Zinc-finger double-stranded RNA-binding zf-CHCC PF10276.4 gi|345004905|ref|YP_004807758.1| - 0.13 12.0 0.4 0.23 11.3 0.3 1.3 1 0 0 1 1 1 0 Zinc-finger domain COX4_pro PF03626.9 gi|345004906|ref|YP_004807759.1| - 2e-09 37.4 12.2 2.3e-09 37.1 8.5 1.1 1 0 0 1 1 1 1 Prokaryotic Cytochrome C oxidase subunit IV Lung_7-TM_R PF06814.8 gi|345004906|ref|YP_004807759.1| - 0.091 11.7 4.8 0.1 11.5 3.3 1.1 1 0 0 1 1 1 0 Lung seven transmembrane receptor MAPEG PF01124.13 gi|345004906|ref|YP_004807759.1| - 0.78 9.3 11.4 0.97 9.0 7.9 1.1 1 0 0 1 1 1 0 MAPEG family DUF3796 PF12676.2 gi|345004906|ref|YP_004807759.1| - 0.86 9.8 6.2 1.7 8.8 0.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3796) DUF4131 PF13567.1 gi|345004906|ref|YP_004807759.1| - 7.2 5.9 6.9 11 5.3 4.8 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4131) COX1 PF00115.15 gi|345004907|ref|YP_004807760.1| - 5.5e-138 460.3 71.5 5.5e-138 460.3 49.6 2.4 2 1 0 2 2 2 1 Cytochrome C and Quinol oxidase polypeptide I COX3 PF00510.13 gi|345004907|ref|YP_004807760.1| - 2.2e-22 79.7 16.4 2.2e-22 79.7 11.3 3.7 3 1 0 3 3 3 1 Cytochrome c oxidase subunit III COX2 PF00116.15 gi|345004908|ref|YP_004807761.1| - 3.1e-19 68.9 0.1 7.7e-19 67.7 0.1 1.6 1 1 0 1 1 1 1 Cytochrome C oxidase subunit II, periplasmic domain AFOR_C PF01314.13 gi|345004909|ref|YP_004807762.1| - 2.7e-69 233.7 3.0 1.3e-68 231.4 2.1 1.9 1 1 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.10 gi|345004909|ref|YP_004807762.1| - 5.9e-46 156.3 0.0 9.4e-46 155.7 0.0 1.3 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain ThiS PF02597.15 gi|345004910|ref|YP_004807763.1| - 7.8e-11 42.2 0.1 9e-11 42.0 0.1 1.1 1 0 0 1 1 1 1 ThiS family TGS PF02824.16 gi|345004910|ref|YP_004807763.1| - 0.0025 17.5 0.3 0.0044 16.8 0.2 1.6 1 1 0 1 1 1 1 TGS domain Lambda_tail_I PF06805.7 gi|345004910|ref|YP_004807763.1| - 0.1 12.4 0.1 0.14 12.0 0.0 1.5 1 1 0 1 1 1 0 Bacteriophage lambda tail assembly protein I MMR_HSR1_C PF08438.5 gi|345004911|ref|YP_004807764.1| - 9.3e-30 103.0 0.0 1.5e-29 102.4 0.0 1.3 1 0 0 1 1 1 1 GTPase of unknown function C-terminal MMR_HSR1 PF01926.18 gi|345004911|ref|YP_004807764.1| - 6.5e-20 71.2 0.0 1.6e-18 66.7 0.0 2.7 3 0 0 3 3 3 1 50S ribosome-binding GTPase TGS PF02824.16 gi|345004911|ref|YP_004807764.1| - 8.7e-12 44.6 0.1 3.3e-11 42.8 0.0 2.0 2 0 0 2 2 2 1 TGS domain FeoB_N PF02421.13 gi|345004911|ref|YP_004807764.1| - 1.2e-06 27.9 0.0 6.4e-05 22.2 0.0 2.5 3 0 0 3 3 3 1 Ferrous iron transport protein B GTP_EFTU PF00009.22 gi|345004911|ref|YP_004807764.1| - 0.00088 18.7 0.0 0.014 14.8 0.0 2.4 2 1 0 2 2 2 1 Elongation factor Tu GTP binding domain ArgK PF03308.11 gi|345004911|ref|YP_004807764.1| - 0.024 13.4 0.0 0.044 12.5 0.0 1.4 1 0 0 1 1 1 0 ArgK protein Miro PF08477.8 gi|345004911|ref|YP_004807764.1| - 0.049 14.1 0.0 0.3 11.6 0.0 2.3 2 1 0 2 2 2 0 Miro-like protein NTPase_1 PF03266.10 gi|345004911|ref|YP_004807764.1| - 0.096 12.3 0.0 7.1 6.2 0.0 2.3 2 0 0 2 2 2 0 NTPase Dynamin_N PF00350.18 gi|345004911|ref|YP_004807764.1| - 0.1 12.4 0.1 1 9.1 0.0 2.4 3 0 0 3 3 3 0 Dynamin family Arf PF00025.16 gi|345004911|ref|YP_004807764.1| - 0.12 11.6 0.0 4.6 6.4 0.0 2.8 3 0 0 3 3 3 0 ADP-ribosylation factor family Ter PF05472.6 gi|345004912|ref|YP_004807765.1| - 0.049 12.7 0.1 0.061 12.4 0.1 1.0 1 0 0 1 1 1 0 DNA replication terminus site-binding protein (Ter protein) TBP PF00352.16 gi|345004914|ref|YP_004807767.1| - 5.7e-66 217.8 0.0 3.4e-32 109.6 0.0 2.0 2 0 0 2 2 2 2 Transcription factor TFIID (or TATA-binding protein, TBP) DUF3378 PF11858.3 gi|345004914|ref|YP_004807767.1| - 8e-05 22.6 0.0 0.35 10.9 0.0 2.2 2 0 0 2 2 2 2 Domain of unknown function (DUF3378) PucR PF07905.6 gi|345004914|ref|YP_004807767.1| - 0.075 12.6 0.0 1.5 8.4 0.0 2.3 2 0 0 2 2 2 0 Purine catabolism regulatory protein-like family CENP-F_C_Rb_bdg PF10490.4 gi|345004914|ref|YP_004807767.1| - 0.13 11.5 0.8 8.1 5.8 0.2 2.3 2 0 0 2 2 2 0 Rb-binding domain of kinetochore protein Cenp-F/LEK1 ResIII PF04851.10 gi|345004916|ref|YP_004807769.1| - 1e-15 58.0 0.0 2.8e-15 56.6 0.0 1.7 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit SNF2_N PF00176.18 gi|345004916|ref|YP_004807769.1| - 5.4e-15 54.9 0.0 8.7e-15 54.2 0.0 1.2 1 0 0 1 1 1 1 SNF2 family N-terminal domain Helicase_C PF00271.26 gi|345004916|ref|YP_004807769.1| - 2.7e-12 46.3 0.0 6.2e-12 45.2 0.0 1.6 1 0 0 1 1 1 1 Helicase conserved C-terminal domain DEAD PF00270.24 gi|345004916|ref|YP_004807769.1| - 2.3e-09 36.9 0.0 4.2e-09 36.1 0.0 1.4 1 0 0 1 1 1 1 DEAD/DEAH box helicase MarR_2 PF12802.2 gi|345004916|ref|YP_004807769.1| - 0.00015 21.3 0.6 0.00039 20.0 0.4 1.7 1 0 0 1 1 1 1 MarR family AAA_19 PF13245.1 gi|345004916|ref|YP_004807769.1| - 0.00051 19.7 0.1 0.002 17.8 0.0 2.0 1 0 0 1 1 1 1 Part of AAA domain TrmB PF01978.14 gi|345004916|ref|YP_004807769.1| - 0.00052 19.6 0.0 0.0015 18.1 0.0 1.7 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB AAA_22 PF13401.1 gi|345004916|ref|YP_004807769.1| - 0.00083 19.5 0.1 0.0094 16.0 0.1 2.5 1 1 0 1 1 1 1 AAA domain HTH_20 PF12840.2 gi|345004916|ref|YP_004807769.1| - 0.00099 18.8 0.7 0.0024 17.6 0.1 2.0 2 0 0 2 2 1 1 Helix-turn-helix domain AAA_25 PF13481.1 gi|345004916|ref|YP_004807769.1| - 0.0023 17.3 0.2 0.0085 15.5 0.0 2.1 2 0 0 2 2 2 1 AAA domain HTH_27 PF13463.1 gi|345004916|ref|YP_004807769.1| - 0.023 14.9 0.1 0.085 13.1 0.1 2.0 1 0 0 1 1 1 0 Winged helix DNA-binding domain Replic_Relax PF13814.1 gi|345004916|ref|YP_004807769.1| - 0.042 13.7 0.1 0.19 11.5 0.0 1.9 2 0 0 2 2 2 0 Replication-relaxation IstB_IS21 PF01695.12 gi|345004916|ref|YP_004807769.1| - 0.07 12.5 0.0 0.24 10.7 0.0 1.9 2 0 0 2 2 2 0 IstB-like ATP binding protein Zeta_toxin PF06414.7 gi|345004916|ref|YP_004807769.1| - 0.073 12.1 0.3 0.33 10.0 0.0 2.1 2 0 0 2 2 2 0 Zeta toxin AAA PF00004.24 gi|345004916|ref|YP_004807769.1| - 0.078 13.1 0.0 0.27 11.4 0.0 1.9 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) Fe_dep_repress PF01325.14 gi|345004916|ref|YP_004807769.1| - 0.12 12.3 0.0 0.26 11.2 0.0 1.5 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain AAA_11 PF13086.1 gi|345004916|ref|YP_004807769.1| - 0.15 11.6 0.0 0.33 10.4 0.0 1.6 1 0 0 1 1 1 0 AAA domain TIR_2 PF13676.1 gi|345004916|ref|YP_004807769.1| - 0.16 12.1 3.3 3.6 7.8 0.0 3.7 4 0 0 4 4 4 0 TIR domain Amidase PF01425.16 gi|345004917|ref|YP_004807770.1| - 3.4e-111 372.2 1.0 4.2e-111 371.9 0.7 1.0 1 0 0 1 1 1 1 Amidase Peptidase_M28 PF04389.12 gi|345004918|ref|YP_004807771.1| - 6.8e-16 58.5 0.4 1.2e-15 57.6 0.3 1.4 1 0 0 1 1 1 1 Peptidase family M28 DUF1292 PF06949.6 gi|345004918|ref|YP_004807771.1| - 0.18 12.1 1.5 0.22 11.8 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF1292) SBP_bac_5 PF00496.17 gi|345004919|ref|YP_004807772.1| - 1.2e-64 218.5 2.1 1.4e-64 218.2 1.1 1.3 1 1 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle TAT_signal PF10518.4 gi|345004919|ref|YP_004807772.1| - 0.11 12.5 0.6 0.2 11.7 0.4 1.5 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence BPD_transp_1 PF00528.17 gi|345004920|ref|YP_004807773.1| - 6.6e-42 143.1 10.0 6.6e-42 143.1 6.9 1.7 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component Phage_CII PF05269.6 gi|345004920|ref|YP_004807773.1| - 0.11 12.5 0.0 0.23 11.4 0.0 1.5 1 0 0 1 1 1 0 Bacteriophage CII protein BPD_transp_1 PF00528.17 gi|345004921|ref|YP_004807774.1| - 2.4e-32 111.9 10.0 2.4e-32 111.9 6.9 1.8 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.2 gi|345004921|ref|YP_004807774.1| - 0.28 10.5 0.1 0.28 10.5 0.1 2.6 2 1 0 2 2 2 0 N-terminal TM domain of oligopeptide transport permease C ABC_tran PF00005.22 gi|345004922|ref|YP_004807775.1| - 3.6e-24 85.6 0.0 5.6e-24 85.0 0.0 1.3 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|345004922|ref|YP_004807775.1| - 2.7e-20 72.4 0.5 5.1e-20 71.5 0.3 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|345004922|ref|YP_004807775.1| - 7.7e-06 26.0 0.0 0.00028 20.9 0.0 2.1 1 1 1 2 2 2 1 AAA domain AAA_29 PF13555.1 gi|345004922|ref|YP_004807775.1| - 0.0093 15.4 0.0 0.02 14.4 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|345004922|ref|YP_004807775.1| - 0.046 13.6 0.3 0.089 12.7 0.2 1.6 1 1 0 1 1 1 0 AAA ATPase domain DUF258 PF03193.11 gi|345004922|ref|YP_004807775.1| - 0.05 12.7 0.1 0.084 12.0 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 ATP-synt_ab PF00006.20 gi|345004922|ref|YP_004807775.1| - 0.14 11.6 0.0 0.14 11.6 0.0 1.1 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain ABC_tran PF00005.22 gi|345004923|ref|YP_004807776.1| - 4.6e-33 114.4 0.0 1.7e-32 112.6 0.0 1.8 2 0 0 2 2 2 1 ABC transporter oligo_HPY PF08352.7 gi|345004923|ref|YP_004807776.1| - 6.4e-17 61.6 0.1 1.4e-16 60.5 0.1 1.6 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|345004923|ref|YP_004807776.1| - 2.7e-08 34.1 0.0 0.00016 21.7 0.0 2.4 2 0 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|345004923|ref|YP_004807776.1| - 3.5e-05 23.1 0.0 0.00015 21.0 0.0 1.9 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.1 gi|345004923|ref|YP_004807776.1| - 0.0006 19.9 0.5 0.0096 16.0 0.4 2.4 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|345004923|ref|YP_004807776.1| - 0.0008 18.8 0.0 0.0016 17.9 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|345004923|ref|YP_004807776.1| - 0.0038 17.2 2.6 0.0043 17.0 0.4 2.2 2 1 0 2 2 2 1 AAA ATPase domain AAA PF00004.24 gi|345004923|ref|YP_004807776.1| - 0.0064 16.6 0.0 0.098 12.8 0.0 2.2 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) DUF258 PF03193.11 gi|345004923|ref|YP_004807776.1| - 0.011 14.9 0.0 0.02 14.1 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 ATP-synt_ab PF00006.20 gi|345004923|ref|YP_004807776.1| - 0.021 14.3 0.0 0.023 14.1 0.0 1.2 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain SbcCD_C PF13558.1 gi|345004923|ref|YP_004807776.1| - 0.031 14.1 0.8 2.7 7.9 0.0 2.9 2 1 0 2 2 2 0 Putative exonuclease SbcCD, C subunit DUF2525 PF10733.4 gi|345004923|ref|YP_004807776.1| - 0.04 13.7 0.3 1.6 8.6 0.0 3.3 3 0 0 3 3 3 0 Protein of unknown function (DUF2525) AAA_5 PF07728.9 gi|345004923|ref|YP_004807776.1| - 0.043 13.5 0.1 0.12 12.0 0.1 1.8 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_33 PF13671.1 gi|345004923|ref|YP_004807776.1| - 0.1 12.4 0.2 0.59 9.9 0.1 2.1 1 1 0 1 1 1 0 AAA domain AAA_18 PF13238.1 gi|345004923|ref|YP_004807776.1| - 0.13 12.5 0.0 0.39 11.0 0.0 1.8 1 0 0 1 1 1 0 AAA domain Mg_chelatase PF01078.16 gi|345004923|ref|YP_004807776.1| - 0.15 11.2 0.0 0.43 9.7 0.0 1.7 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI DoxX PF07681.7 gi|345004924|ref|YP_004807777.1| - 4.4e-09 36.6 1.0 4.4e-09 36.6 0.7 1.4 2 0 0 2 2 2 1 DoxX SURF4 PF02077.10 gi|345004924|ref|YP_004807777.1| - 0.0019 17.6 0.0 0.0023 17.3 0.0 1.1 1 0 0 1 1 1 1 SURF4 family Acetyltransf_1 PF00583.19 gi|345004925|ref|YP_004807778.1| - 5.3e-13 48.8 0.1 8.9e-13 48.0 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|345004925|ref|YP_004807778.1| - 5.5e-09 36.0 0.1 8.5e-09 35.4 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|345004925|ref|YP_004807778.1| - 1.6e-08 34.6 0.1 1.9e-08 34.4 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain DnaA_N PF11638.3 gi|345004925|ref|YP_004807778.1| - 0.0048 16.4 0.0 0.072 12.6 0.0 2.1 2 0 0 2 2 2 1 DnaA N-terminal domain Acetyltransf_9 PF13527.1 gi|345004925|ref|YP_004807778.1| - 0.0096 15.7 0.0 0.012 15.4 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_6 PF13480.1 gi|345004925|ref|YP_004807778.1| - 0.012 15.5 1.5 0.016 15.1 1.0 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain EamA PF00892.15 gi|345004926|ref|YP_004807779.1| - 1.8e-25 89.3 23.8 2.8e-13 50.0 5.3 2.3 2 0 0 2 2 2 2 EamA-like transporter family EmrE PF13536.1 gi|345004926|ref|YP_004807779.1| - 1.1e-08 35.2 27.0 1.3e-08 35.0 2.5 3.5 3 1 1 4 4 4 2 Multidrug resistance efflux transporter DUF422 PF04240.7 gi|345004927|ref|YP_004807780.1| - 1.7e-09 37.4 19.6 2e-09 37.1 13.6 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF422) DUF1144 PF06610.8 gi|345004927|ref|YP_004807780.1| - 0.052 13.3 0.4 0.087 12.5 0.3 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1144) Polyketide_cyc PF03364.15 gi|345004928|ref|YP_004807781.1| - 4.2e-08 33.2 0.0 5.5e-08 32.8 0.0 1.1 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport Polyketide_cyc2 PF10604.4 gi|345004928|ref|YP_004807781.1| - 1.5e-05 25.1 0.0 1.8e-05 24.9 0.0 1.1 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport zf-IS66 PF13005.2 gi|345004930|ref|YP_004807783.1| - 0.0026 17.6 0.4 0.0098 15.8 0.2 1.9 2 0 0 2 2 2 1 zinc-finger binding domain of transposase IS66 zinc_ribbon_2 PF13240.1 gi|345004930|ref|YP_004807783.1| - 0.004 16.5 0.0 0.29 10.6 0.0 2.2 2 0 0 2 2 2 1 zinc-ribbon domain Nudix_N_2 PF14803.1 gi|345004930|ref|YP_004807783.1| - 0.016 14.8 0.2 0.2 11.4 0.1 2.1 2 0 0 2 2 2 0 Nudix N-terminal zf-ribbon_3 PF13248.1 gi|345004930|ref|YP_004807783.1| - 0.035 13.3 1.4 0.32 10.2 1.0 2.0 1 1 0 1 1 1 0 zinc-ribbon domain DNA_ligase_ZBD PF03119.11 gi|345004930|ref|YP_004807783.1| - 0.045 13.4 2.3 0.073 12.7 0.5 2.2 2 1 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain DZR PF12773.2 gi|345004930|ref|YP_004807783.1| - 0.089 12.6 0.0 0.86 9.4 0.0 2.0 2 0 0 2 2 2 0 Double zinc ribbon UPF0547 PF10571.4 gi|345004930|ref|YP_004807783.1| - 0.12 12.0 0.6 2 8.1 0.1 2.1 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Asp_Arg_Hydrox PF05118.10 gi|345004931|ref|YP_004807784.1| - 0.038 13.8 0.1 0.26 11.0 0.0 1.9 2 0 0 2 2 2 0 Aspartyl/Asparaginyl beta-hydroxylase EF-1_beta_acid PF10587.4 gi|345004931|ref|YP_004807784.1| - 0.51 10.5 8.1 0.58 10.3 2.1 2.5 2 0 0 2 2 2 0 Eukaryotic elongation factor 1 beta central acidic region Proteasome PF00227.21 gi|345004933|ref|YP_004807786.1| - 9.8e-46 155.4 1.0 1.1e-45 155.2 0.7 1.0 1 0 0 1 1 1 1 Proteasome subunit DNA_ligase_A_N PF04675.9 gi|345004935|ref|YP_004807788.1| - 1.1e-36 126.2 0.0 1.9e-36 125.5 0.0 1.4 1 0 0 1 1 1 1 DNA ligase N terminus DNA_ligase_A_M PF01068.16 gi|345004935|ref|YP_004807788.1| - 1.7e-35 122.2 0.0 1.2e-34 119.4 0.0 2.0 1 1 0 1 1 1 1 ATP dependent DNA ligase domain DNA_ligase_A_C PF04679.10 gi|345004935|ref|YP_004807788.1| - 2.8e-20 72.5 0.0 7.7e-20 71.1 0.0 1.8 1 0 0 1 1 1 1 ATP dependent DNA ligase C terminal region DNA_ligase_OB_2 PF14743.1 gi|345004935|ref|YP_004807788.1| - 0.0081 15.8 0.0 0.042 13.5 0.0 2.1 1 1 0 1 1 1 1 DNA ligase OB-like domain Lactamase_B_3 PF13483.1 gi|345004936|ref|YP_004807789.1| - 3.7e-25 88.5 0.0 6e-25 87.8 0.0 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.2 gi|345004936|ref|YP_004807789.1| - 0.00032 20.2 0.0 0.00061 19.3 0.0 1.5 1 1 0 1 1 1 1 Beta-lactamase superfamily domain HrcA_DNA-bdg PF03444.10 gi|345004937|ref|YP_004807790.1| - 1.3e-35 120.6 0.1 1.8e-35 120.2 0.1 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding Rrf2 PF02082.15 gi|345004937|ref|YP_004807790.1| - 3.7e-08 33.3 0.1 6.2e-08 32.6 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator HTH_11 PF08279.7 gi|345004937|ref|YP_004807790.1| - 1.2e-05 24.7 0.0 2.2e-05 24.0 0.0 1.4 1 0 0 1 1 1 1 HTH domain HTH_38 PF13936.1 gi|345004937|ref|YP_004807790.1| - 0.003 17.0 0.1 0.0077 15.7 0.1 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.14 gi|345004937|ref|YP_004807790.1| - 0.0058 16.3 0.0 0.013 15.1 0.0 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.1 gi|345004937|ref|YP_004807790.1| - 0.022 14.1 0.1 0.079 12.3 0.1 1.9 1 1 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_20 PF12840.2 gi|345004937|ref|YP_004807790.1| - 0.033 14.0 0.0 0.057 13.2 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain Epimerase PF01370.16 gi|345004938|ref|YP_004807791.1| - 2.4e-40 138.4 0.1 3.1e-40 138.0 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|345004938|ref|YP_004807791.1| - 5.4e-12 44.9 0.0 9.5e-12 44.1 0.0 1.4 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.12 gi|345004938|ref|YP_004807791.1| - 2.5e-11 43.0 0.0 3.8e-11 42.4 0.0 1.2 1 0 0 1 1 1 1 RmlD substrate binding domain Polysacc_synt_2 PF02719.10 gi|345004938|ref|YP_004807791.1| - 1e-09 37.7 0.2 9.5e-07 27.9 0.0 2.3 2 0 0 2 2 2 2 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.7 gi|345004938|ref|YP_004807791.1| - 4.4e-07 29.0 0.0 0.00012 21.0 0.0 2.1 2 0 0 2 2 2 2 Male sterility protein adh_short PF00106.20 gi|345004938|ref|YP_004807791.1| - 0.0001 22.2 0.2 0.011 15.6 0.2 2.3 1 1 0 1 1 1 1 short chain dehydrogenase NAD_binding_10 PF13460.1 gi|345004938|ref|YP_004807791.1| - 0.00058 19.9 0.0 0.00074 19.5 0.0 1.2 1 0 0 1 1 1 1 NADH(P)-binding KR PF08659.5 gi|345004938|ref|YP_004807791.1| - 0.029 14.0 0.1 1.6 8.3 0.0 2.2 2 0 0 2 2 2 0 KR domain RNase_H_2 PF13482.1 gi|345004942|ref|YP_004807795.1| - 1.2e-33 116.2 0.0 1.5e-33 115.9 0.0 1.1 1 0 0 1 1 1 1 RNase_H superfamily DNA_pol_A_exo1 PF01612.15 gi|345004942|ref|YP_004807795.1| - 0.00032 20.2 0.0 0.0005 19.6 0.0 1.3 1 1 0 1 1 1 1 3'-5' exonuclease HHH_5 PF14520.1 gi|345004942|ref|YP_004807795.1| - 0.0067 16.5 0.0 0.09 12.9 0.0 2.5 2 1 0 2 2 2 1 Helix-hairpin-helix domain DNA_pol_B_exo2 PF10108.4 gi|345004942|ref|YP_004807795.1| - 0.03 13.8 0.0 0.19 11.2 0.0 2.0 1 1 1 2 2 2 0 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB Bactofilin PF04519.8 gi|345004944|ref|YP_004807797.1| - 1.6e-10 40.8 7.5 7.7e-08 32.2 0.8 3.9 3 2 0 3 3 3 2 Polymer-forming cytoskeletal Hexapep PF00132.19 gi|345004944|ref|YP_004807797.1| - 4.3e-08 32.3 3.8 0.0085 15.5 0.0 5.4 4 1 1 5 5 5 3 Bacterial transferase hexapeptide (six repeats) DUF3494 PF11999.3 gi|345004944|ref|YP_004807797.1| - 0.0052 16.4 0.2 0.095 12.3 0.0 2.8 2 1 0 2 2 2 1 Protein of unknown function (DUF3494) Hexapep_2 PF14602.1 gi|345004944|ref|YP_004807797.1| - 0.014 14.9 8.4 1.2 8.7 0.6 4.4 4 1 0 4 4 4 0 Hexapeptide repeat of succinyl-transferase DUF4098 PF13345.1 gi|345004944|ref|YP_004807797.1| - 0.43 10.5 4.3 2.1 8.3 1.3 2.9 2 1 0 2 2 2 0 Domain of unknown function (DUF4098) HAD_2 PF13419.1 gi|345004945|ref|YP_004807798.1| - 2.4e-29 102.8 0.8 2.8e-29 102.5 0.5 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|345004945|ref|YP_004807798.1| - 6e-05 23.5 1.1 0.0001 22.7 0.7 1.5 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|345004945|ref|YP_004807798.1| - 8.5e-05 22.1 0.1 0.00036 20.1 0.1 2.0 1 0 0 1 1 1 1 HAD-hyrolase-like Bac_luciferase PF00296.15 gi|345004945|ref|YP_004807798.1| - 0.0074 15.4 0.3 0.0092 15.1 0.2 1.3 1 0 0 1 1 1 1 Luciferase-like monooxygenase HAD PF12710.2 gi|345004945|ref|YP_004807798.1| - 0.0092 16.1 0.0 0.011 15.9 0.0 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.1 gi|345004945|ref|YP_004807798.1| - 0.051 13.4 0.0 0.13 12.1 0.0 1.6 1 0 0 1 1 1 0 Haloacid dehalogenase-like hydrolase MMR_HSR1_C PF08438.5 gi|345004946|ref|YP_004807799.1| - 1.1e-31 109.2 0.0 1.8e-31 108.6 0.0 1.3 1 0 0 1 1 1 1 GTPase of unknown function C-terminal MMR_HSR1 PF01926.18 gi|345004946|ref|YP_004807799.1| - 2.3e-17 62.9 0.0 1.3e-16 60.6 0.0 2.1 1 1 0 1 1 1 1 50S ribosome-binding GTPase TGS PF02824.16 gi|345004946|ref|YP_004807799.1| - 1.3e-11 44.1 0.0 3.3e-11 42.8 0.0 1.7 2 0 0 2 2 2 1 TGS domain FeoB_N PF02421.13 gi|345004946|ref|YP_004807799.1| - 1.8e-09 37.0 0.0 1e-07 31.3 0.0 2.9 3 0 0 3 3 3 1 Ferrous iron transport protein B GTP_EFTU PF00009.22 gi|345004946|ref|YP_004807799.1| - 0.058 12.8 0.0 1.3 8.4 0.0 2.5 3 0 0 3 3 3 0 Elongation factor Tu GTP binding domain Miro PF08477.8 gi|345004946|ref|YP_004807799.1| - 0.13 12.7 0.0 2.8 8.4 0.0 2.6 2 1 0 2 2 2 0 Miro-like protein Na_Ca_ex PF01699.19 gi|345004947|ref|YP_004807800.1| - 7.5e-37 126.0 25.8 2.1e-19 69.5 8.3 2.2 2 0 0 2 2 2 2 Sodium/calcium exchanger protein GlpM PF06942.7 gi|345004947|ref|YP_004807800.1| - 0.26 11.5 4.9 0.11 12.8 0.3 2.3 2 0 0 2 2 2 0 GlpM protein AA_permease_2 PF13520.1 gi|345004948|ref|YP_004807801.1| - 1.5e-43 148.8 42.3 1.9e-43 148.6 29.3 1.0 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.16 gi|345004948|ref|YP_004807801.1| - 1.6e-42 145.4 42.7 2e-42 145.1 29.6 1.1 1 0 0 1 1 1 1 Amino acid permease TMEM220 PF15071.1 gi|345004948|ref|YP_004807801.1| - 0.31 11.4 8.0 0.18 12.2 0.4 3.2 3 0 0 3 3 3 0 Transmembrane family 220, helix Trp_Tyr_perm PF03222.8 gi|345004948|ref|YP_004807801.1| - 1.7 7.3 31.7 5.4 5.7 21.9 1.9 1 1 0 1 1 1 0 Tryptophan/tyrosine permease family Usp PF00582.21 gi|345004949|ref|YP_004807802.1| - 1.3e-07 31.9 3.3 3.7e-05 23.9 0.2 2.3 1 1 1 2 2 2 2 Universal stress protein family HhH-GPD PF00730.20 gi|345004950|ref|YP_004807803.1| - 2.2e-16 60.0 0.0 3.2e-16 59.5 0.0 1.2 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.18 gi|345004950|ref|YP_004807803.1| - 7.2e-09 34.8 0.0 1.5e-08 33.8 0.0 1.6 1 0 0 1 1 1 1 Helix-hairpin-helix motif HemN_C PF06969.11 gi|345004950|ref|YP_004807803.1| - 0.034 14.2 0.0 0.11 12.5 0.0 1.8 1 0 0 1 1 1 0 HemN C-terminal domain Peptidase_C54 PF03416.14 gi|345004951|ref|YP_004807804.1| - 0.055 12.6 0.0 0.058 12.5 0.0 1.1 1 0 0 1 1 1 0 Peptidase family C54 DUF3695 PF12494.3 gi|345004951|ref|YP_004807804.1| - 0.15 11.8 0.4 0.37 10.5 0.3 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF3695) Aminotran_3 PF00202.16 gi|345004952|ref|YP_004807805.1| - 6.2e-64 215.9 0.0 4.1e-63 213.2 0.0 1.8 1 1 0 1 1 1 1 Aminotransferase class-III DUF4010 PF13194.1 gi|345004953|ref|YP_004807806.1| - 4.3e-46 156.8 29.1 4.3e-46 156.8 20.1 3.1 2 1 1 3 3 3 1 Domain of unknown function (DUF4010) MgtC PF02308.11 gi|345004953|ref|YP_004807806.1| - 1.4e-12 47.6 10.5 1.4e-12 47.6 7.3 3.3 3 1 0 3 3 3 1 MgtC family UPF0118 PF01594.11 gi|345004954|ref|YP_004807807.1| - 6e-27 94.4 35.1 1e-26 93.6 24.3 1.4 1 1 0 1 1 1 1 Domain of unknown function DUF20 PadR PF03551.9 gi|345004955|ref|YP_004807808.1| - 5.9e-17 61.1 1.4 7.4e-17 60.8 1.0 1.1 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_27 PF13463.1 gi|345004955|ref|YP_004807808.1| - 0.00077 19.7 0.1 0.001 19.3 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_45 PF14947.1 gi|345004955|ref|YP_004807808.1| - 0.0016 18.2 0.1 0.0023 17.7 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DUF1495 PF07381.6 gi|345004955|ref|YP_004807808.1| - 0.0045 16.6 0.0 0.0065 16.1 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain (DUF1495) MarR_2 PF12802.2 gi|345004955|ref|YP_004807808.1| - 0.012 15.2 0.3 2.2 7.9 0.1 2.3 2 0 0 2 2 2 0 MarR family TrmB PF01978.14 gi|345004955|ref|YP_004807808.1| - 0.063 12.9 0.1 0.096 12.4 0.1 1.2 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_34 PF13601.1 gi|345004955|ref|YP_004807808.1| - 0.064 13.3 0.0 0.08 12.9 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain DUF4364 PF14277.1 gi|345004955|ref|YP_004807808.1| - 0.074 12.6 0.0 0.089 12.4 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) Penicillinase_R PF03965.11 gi|345004955|ref|YP_004807808.1| - 0.12 12.4 0.0 0.12 12.4 0.0 1.3 1 0 0 1 1 1 0 Penicillinase repressor TLE_N PF03920.10 gi|345004956|ref|YP_004807809.1| - 0.092 12.5 0.4 0.093 12.5 0.3 1.2 1 0 0 1 1 1 0 Groucho/TLE N-terminal Q-rich domain TF_Zn_Ribbon PF08271.7 gi|345004958|ref|YP_004807811.1| - 0.00012 21.2 1.4 0.0003 20.0 1.0 1.7 1 0 0 1 1 1 1 TFIIB zinc-binding HypA PF01155.14 gi|345004958|ref|YP_004807811.1| - 0.0068 16.0 1.0 0.014 15.0 0.7 1.5 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family DZR PF12773.2 gi|345004958|ref|YP_004807811.1| - 0.013 15.2 0.7 0.029 14.1 0.5 1.5 1 0 0 1 1 1 0 Double zinc ribbon NinG PF05766.7 gi|345004958|ref|YP_004807811.1| - 0.021 14.5 0.0 0.038 13.7 0.0 1.4 1 0 0 1 1 1 0 Bacteriophage Lambda NinG protein zf-C2H2_3 PF13878.1 gi|345004958|ref|YP_004807811.1| - 0.028 13.9 3.2 0.12 12.0 0.0 2.4 1 1 1 2 2 2 0 zinc-finger of acetyl-transferase ESCO FYDLN_acid PF09538.5 gi|345004958|ref|YP_004807811.1| - 0.035 14.6 0.2 0.035 14.6 0.2 2.3 2 1 0 2 2 2 0 Protein of unknown function (FYDLN_acid) zf-IS66 PF13005.2 gi|345004958|ref|YP_004807811.1| - 0.046 13.7 1.4 0.97 9.4 0.1 2.7 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 A2L_zn_ribbon PF08792.5 gi|345004958|ref|YP_004807811.1| - 0.059 12.8 0.6 0.11 12.0 0.4 1.4 1 0 0 1 1 1 0 A2L zinc ribbon domain Zn-ribbon_8 PF09723.5 gi|345004958|ref|YP_004807811.1| - 0.084 12.8 1.9 0.25 11.3 1.3 1.8 1 1 0 1 1 1 0 Zinc ribbon domain UPF0547 PF10571.4 gi|345004958|ref|YP_004807811.1| - 0.24 11.1 2.3 6.7 6.4 0.1 2.3 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zf-ribbon_3 PF13248.1 gi|345004958|ref|YP_004807811.1| - 0.41 9.9 5.3 4.8 6.5 3.8 2.2 1 1 1 2 2 2 0 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|345004958|ref|YP_004807811.1| - 0.42 10.1 2.5 12 5.4 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|345004958|ref|YP_004807811.1| - 3.4 7.5 11.7 65 3.4 3.0 4.1 4 1 0 4 4 4 0 Transposase zinc-ribbon domain Usp PF00582.21 gi|345004959|ref|YP_004807812.1| - 3.3e-14 53.2 0.4 3.7e-14 53.1 0.2 1.0 1 0 0 1 1 1 1 Universal stress protein family THF_DHG_CYH_C PF02882.14 gi|345004960|ref|YP_004807813.1| - 6.6e-63 210.5 1.5 9.8e-63 210.0 1.1 1.2 1 0 0 1 1 1 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain THF_DHG_CYH PF00763.18 gi|345004960|ref|YP_004807813.1| - 5.5e-39 132.8 0.2 9.4e-39 132.0 0.1 1.4 1 0 0 1 1 1 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain Hydrolase PF00702.21 gi|345004960|ref|YP_004807813.1| - 0.033 14.6 0.1 0.078 13.3 0.0 1.6 1 0 0 1 1 1 0 haloacid dehalogenase-like hydrolase OMPdecase PF00215.19 gi|345004960|ref|YP_004807813.1| - 0.035 13.4 0.0 0.085 12.2 0.0 1.7 1 0 0 1 1 1 0 Orotidine 5'-phosphate decarboxylase / HUMPS family Lipase_GDSL_2 PF13472.1 gi|345004960|ref|YP_004807813.1| - 0.7 10.0 4.1 15 5.6 0.1 2.8 2 1 0 2 2 2 0 GDSL-like Lipase/Acylhydrolase family SHMT PF00464.14 gi|345004961|ref|YP_004807814.1| - 1.9e-149 497.4 0.0 2.3e-149 497.1 0.0 1.1 1 0 0 1 1 1 1 Serine hydroxymethyltransferase Aminotran_1_2 PF00155.16 gi|345004961|ref|YP_004807814.1| - 2e-10 40.1 0.0 6.5e-10 38.5 0.0 1.8 1 1 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.16 gi|345004961|ref|YP_004807814.1| - 0.00023 20.4 0.2 0.0012 18.0 0.1 1.9 1 1 0 1 1 1 1 Beta-eliminating lyase DUF348 PF03990.9 gi|345004961|ref|YP_004807814.1| - 0.02 14.4 1.9 0.068 12.7 0.1 2.7 3 0 0 3 3 3 0 Domain of unknown function (DUF348) AP_endonuc_2 PF01261.19 gi|345004961|ref|YP_004807814.1| - 0.032 13.5 1.0 1 8.5 0.0 2.9 2 2 1 3 3 3 0 Xylose isomerase-like TIM barrel CHAT PF12770.2 gi|345004962|ref|YP_004807815.1| - 0.13 11.3 0.2 0.52 9.3 0.1 1.7 1 1 0 1 1 1 0 CHAT domain COX15-CtaA PF02628.10 gi|345004963|ref|YP_004807816.1| - 0.042 12.7 0.5 0.045 12.6 0.3 1.0 1 0 0 1 1 1 0 Cytochrome oxidase assembly protein YcaO PF02624.11 gi|345004965|ref|YP_004807818.1| - 7.2e-58 196.6 8.9 1.1e-57 196.0 6.1 1.3 1 0 0 1 1 1 1 YcaO-like family MoeZ_MoeB PF05237.8 gi|345004965|ref|YP_004807818.1| - 0.026 14.1 0.0 0.071 12.7 0.0 1.7 2 0 0 2 2 2 0 MoeZ/MoeB domain Amidohydro_1 PF01979.15 gi|345004966|ref|YP_004807819.1| - 2.3e-22 80.1 0.0 5.4e-21 75.6 0.0 2.0 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_4 PF13147.1 gi|345004966|ref|YP_004807819.1| - 1.1e-11 45.3 6.6 5.1e-11 43.1 4.6 1.9 1 1 0 1 1 1 1 Amidohydrolase A_deaminase PF00962.17 gi|345004966|ref|YP_004807819.1| - 5.4e-07 28.8 0.0 1e-06 27.9 0.0 1.4 1 1 0 1 1 1 1 Adenosine/AMP deaminase Amidohydro_5 PF13594.1 gi|345004966|ref|YP_004807819.1| - 1.2e-06 28.1 0.0 2.4e-06 27.2 0.0 1.5 1 0 0 1 1 1 1 Amidohydrolase Amidohydro_3 PF07969.6 gi|345004966|ref|YP_004807819.1| - 1.7e-05 24.2 8.1 7.6e-05 22.1 1.9 3.1 1 1 1 2 2 2 1 Amidohydrolase family FluMu_gp41 PF10109.4 gi|345004966|ref|YP_004807819.1| - 0.058 13.3 0.2 0.24 11.3 0.0 2.0 2 0 0 2 2 2 0 Mu-like prophage FluMu protein gp41 CPSase_L_D2 PF02786.12 gi|345004967|ref|YP_004807820.1| - 9.8e-75 250.4 0.1 1.6e-74 249.7 0.1 1.3 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain CPSase_L_chain PF00289.17 gi|345004967|ref|YP_004807820.1| - 1.4e-40 137.7 0.2 4.9e-40 136.0 0.1 2.0 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, N-terminal domain Biotin_carb_C PF02785.14 gi|345004967|ref|YP_004807820.1| - 7.2e-34 115.9 0.0 1.8e-33 114.7 0.0 1.7 1 0 0 1 1 1 1 Biotin carboxylase C-terminal domain Biotin_lipoyl PF00364.17 gi|345004967|ref|YP_004807820.1| - 2.1e-18 65.7 8.7 2.7e-18 65.3 4.6 2.4 3 0 0 3 3 3 1 Biotin-requiring enzyme ATP-grasp_4 PF13535.1 gi|345004967|ref|YP_004807820.1| - 7.8e-17 61.6 0.4 1.7e-16 60.4 0.3 1.6 1 0 0 1 1 1 1 ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|345004967|ref|YP_004807820.1| - 7.3e-14 51.2 0.2 1.6e-13 50.0 0.1 1.5 1 1 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon Dala_Dala_lig_C PF07478.8 gi|345004967|ref|YP_004807820.1| - 1.8e-09 37.3 0.0 6.8e-09 35.4 0.0 2.0 2 1 0 2 2 2 1 D-ala D-ala ligase C-terminus ATP-grasp PF02222.17 gi|345004967|ref|YP_004807820.1| - 2.9e-08 33.2 0.2 6.4e-08 32.1 0.1 1.6 1 0 0 1 1 1 1 ATP-grasp domain Biotin_lipoyl_2 PF13533.1 gi|345004967|ref|YP_004807820.1| - 2.3e-07 30.3 3.6 0.0065 16.1 0.1 3.0 2 1 1 3 3 3 2 Biotin-lipoyl like ATP-grasp_3 PF02655.9 gi|345004967|ref|YP_004807820.1| - 5.8e-07 29.5 0.0 1.1e-06 28.5 0.0 1.5 1 0 0 1 1 1 1 ATP-grasp domain GARS_A PF01071.14 gi|345004967|ref|YP_004807820.1| - 3.6e-05 23.4 0.3 0.00014 21.5 0.0 2.0 2 0 0 2 2 2 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain HlyD_2 PF12700.2 gi|345004967|ref|YP_004807820.1| - 4.5e-05 22.7 2.7 0.066 12.3 0.2 2.5 1 1 1 2 2 2 2 HlyD family secretion protein RimK PF08443.6 gi|345004967|ref|YP_004807820.1| - 0.00045 19.7 0.0 0.0032 16.9 0.0 2.1 1 1 0 1 1 1 1 RimK-like ATP-grasp domain ATP-grasp_5 PF13549.1 gi|345004967|ref|YP_004807820.1| - 0.00094 18.4 0.1 0.0018 17.5 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain HlyD_3 PF13437.1 gi|345004967|ref|YP_004807820.1| - 0.0064 16.8 0.5 2.6 8.4 0.0 2.8 2 0 0 2 2 2 1 HlyD family secretion protein PTS_EIIA_1 PF00358.15 gi|345004967|ref|YP_004807820.1| - 0.11 12.0 2.5 0.8 9.2 0.0 3.2 3 1 1 4 4 3 0 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 GCV_H PF01597.14 gi|345004967|ref|YP_004807820.1| - 0.18 11.4 2.1 0.6 9.7 0.6 2.3 2 0 0 2 2 2 0 Glycine cleavage H-protein HlyD PF00529.15 gi|345004967|ref|YP_004807820.1| - 0.22 10.7 6.5 1.9 7.7 0.2 2.9 2 1 1 3 3 3 0 HlyD family secretion protein UPF0179 PF03684.8 gi|345004968|ref|YP_004807821.1| - 2.2e-47 160.2 0.1 2.5e-47 160.0 0.1 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0179) DDE_Tnp_1_6 PF13751.1 gi|345004968|ref|YP_004807821.1| - 0.0023 17.9 0.2 0.0023 17.9 0.1 1.6 2 0 0 2 2 2 1 Transposase DDE domain DUF2188 PF09954.4 gi|345004969|ref|YP_004807822.1| - 0.047 13.6 0.1 0.1 12.5 0.1 1.5 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2188) DNA_photolyase PF00875.13 gi|345004970|ref|YP_004807823.1| - 0.11 12.2 1.0 0.11 12.1 0.7 1.1 1 0 0 1 1 1 0 DNA photolyase Aminotran_3 PF00202.16 gi|345004972|ref|YP_004807825.1| - 6.4e-61 206.0 0.0 1.6e-60 204.7 0.0 1.6 1 1 0 1 1 1 1 Aminotransferase class-III 2-Hacid_dh_C PF02826.14 gi|345004973|ref|YP_004807826.1| - 1.2e-48 164.6 0.0 1.6e-48 164.1 0.0 1.2 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.25 gi|345004973|ref|YP_004807826.1| - 1.5e-09 37.4 0.0 1.9e-09 37.0 0.0 1.1 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain IlvN PF07991.7 gi|345004973|ref|YP_004807826.1| - 0.0053 16.1 0.0 0.013 14.8 0.0 1.6 2 0 0 2 2 2 1 Acetohydroxy acid isomeroreductase, catalytic domain F420_oxidored PF03807.12 gi|345004973|ref|YP_004807826.1| - 0.006 16.9 0.0 0.013 15.8 0.0 1.7 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent TrkA_N PF02254.13 gi|345004973|ref|YP_004807826.1| - 0.02 14.9 0.3 0.46 10.4 0.0 2.8 3 0 0 3 3 3 0 TrkA-N domain ThiF PF00899.16 gi|345004973|ref|YP_004807826.1| - 0.083 12.7 0.1 0.18 11.6 0.1 1.6 1 0 0 1 1 1 0 ThiF family Peptidase_M24 PF00557.19 gi|345004974|ref|YP_004807827.1| - 2e-31 109.2 0.0 2.7e-31 108.7 0.0 1.2 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.13 gi|345004974|ref|YP_004807827.1| - 2.6e-21 76.4 0.2 5e-21 75.5 0.1 1.5 1 0 0 1 1 1 1 Creatinase/Prolidase N-terminal domain Aminotran_3 PF00202.16 gi|345004975|ref|YP_004807828.1| - 1.2e-85 287.3 0.0 1.4e-85 287.1 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-III Peptidase_M20 PF01546.23 gi|345004976|ref|YP_004807829.1| - 1.7e-17 63.5 13.0 9.6e-17 61.0 9.0 1.9 1 1 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.9 gi|345004976|ref|YP_004807829.1| - 2.9e-12 46.2 0.8 6.6e-12 45.1 0.5 1.6 1 0 0 1 1 1 1 Peptidase dimerisation domain EamA PF00892.15 gi|345004978|ref|YP_004807831.1| - 3.1e-16 59.5 34.1 2.2e-11 43.8 10.0 2.5 2 1 1 3 3 3 2 EamA-like transporter family EmrE PF13536.1 gi|345004978|ref|YP_004807831.1| - 8.8e-08 32.3 42.0 3.1e-05 24.1 6.5 3.6 2 2 2 4 4 4 3 Multidrug resistance efflux transporter Arginase PF00491.16 gi|345004979|ref|YP_004807832.1| - 3.3e-63 213.6 1.6 4e-63 213.2 1.1 1.0 1 0 0 1 1 1 1 Arginase family SBP_bac_8 PF13416.1 gi|345004980|ref|YP_004807833.1| - 6.2e-12 45.8 1.7 1.1e-11 44.9 1.2 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.1 gi|345004980|ref|YP_004807833.1| - 6.2e-07 28.9 0.6 7.5e-07 28.7 0.4 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein TAT_signal PF10518.4 gi|345004980|ref|YP_004807833.1| - 0.026 14.4 2.1 0.076 13.0 1.5 1.9 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence ABC_tran PF00005.22 gi|345004981|ref|YP_004807834.1| - 7e-36 123.5 0.0 1e-35 122.9 0.0 1.3 1 0 0 1 1 1 1 ABC transporter TOBE_2 PF08402.5 gi|345004981|ref|YP_004807834.1| - 2e-12 46.9 0.0 7e-12 45.1 0.0 2.0 1 0 0 1 1 1 1 TOBE domain AAA_21 PF13304.1 gi|345004981|ref|YP_004807834.1| - 0.00013 22.0 0.0 0.18 11.7 0.0 2.3 1 1 0 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|345004981|ref|YP_004807834.1| - 0.00055 19.9 0.5 0.011 15.7 0.0 2.2 2 0 0 2 2 2 1 AAA ATPase domain DUF258 PF03193.11 gi|345004981|ref|YP_004807834.1| - 0.00098 18.3 0.1 0.0018 17.4 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_22 PF13401.1 gi|345004981|ref|YP_004807834.1| - 0.0043 17.1 0.2 0.012 15.7 0.0 1.7 2 0 0 2 2 2 1 AAA domain AAA_29 PF13555.1 gi|345004981|ref|YP_004807834.1| - 0.0045 16.4 0.1 0.0093 15.4 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain TOBE PF03459.12 gi|345004981|ref|YP_004807834.1| - 0.012 15.6 0.0 0.045 13.8 0.0 2.1 2 0 0 2 2 1 0 TOBE domain FtsK_SpoIIIE PF01580.13 gi|345004981|ref|YP_004807834.1| - 0.019 14.4 0.0 0.034 13.6 0.0 1.4 1 0 0 1 1 1 0 FtsK/SpoIIIE family AAA_23 PF13476.1 gi|345004981|ref|YP_004807834.1| - 0.027 14.7 0.0 0.083 13.2 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_33 PF13671.1 gi|345004981|ref|YP_004807834.1| - 0.03 14.2 0.1 0.055 13.3 0.1 1.4 1 0 0 1 1 1 0 AAA domain SRP54 PF00448.17 gi|345004981|ref|YP_004807834.1| - 0.032 13.6 0.1 0.055 12.9 0.0 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_17 PF13207.1 gi|345004981|ref|YP_004807834.1| - 0.048 14.4 0.2 0.12 13.1 0.0 1.8 2 0 0 2 2 1 0 AAA domain NACHT PF05729.7 gi|345004981|ref|YP_004807834.1| - 0.056 13.0 0.3 0.35 10.5 0.1 2.0 2 0 0 2 2 2 0 NACHT domain MMR_HSR1 PF01926.18 gi|345004981|ref|YP_004807834.1| - 0.06 13.3 0.0 0.1 12.5 0.0 1.5 1 0 0 1 1 1 0 50S ribosome-binding GTPase AAA_19 PF13245.1 gi|345004981|ref|YP_004807834.1| - 0.065 13.0 0.1 0.17 11.6 0.1 1.7 1 0 0 1 1 1 0 Part of AAA domain Rad17 PF03215.10 gi|345004981|ref|YP_004807834.1| - 0.072 11.7 0.0 0.1 11.2 0.0 1.1 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein AAA PF00004.24 gi|345004981|ref|YP_004807834.1| - 0.079 13.1 0.1 0.35 11.0 0.0 2.0 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_10 PF12846.2 gi|345004981|ref|YP_004807834.1| - 0.095 12.1 0.2 0.18 11.1 0.0 1.6 2 0 0 2 2 2 0 AAA-like domain DUF1861 PF08950.5 gi|345004981|ref|YP_004807834.1| - 0.11 11.2 0.0 0.18 10.5 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1861) MobB PF03205.9 gi|345004981|ref|YP_004807834.1| - 0.12 12.0 0.0 0.29 10.8 0.0 1.7 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B UPF0079 PF02367.12 gi|345004981|ref|YP_004807834.1| - 0.14 11.7 0.2 0.39 10.3 0.0 1.7 2 0 0 2 2 2 0 Uncharacterised P-loop hydrolase UPF0079 BPD_transp_1 PF00528.17 gi|345004982|ref|YP_004807835.1| - 1e-11 44.7 27.8 8e-11 41.7 19.3 2.1 1 1 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.17 gi|345004983|ref|YP_004807836.1| - 9.7e-17 61.0 17.3 9.7e-17 61.0 12.0 1.9 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component BofA PF07441.6 gi|345004983|ref|YP_004807836.1| - 3.2 7.8 10.7 0.75 9.8 2.2 3.1 2 1 1 3 3 3 0 SigmaK-factor processing regulatory protein BofA DAO PF01266.19 gi|345004985|ref|YP_004807838.1| - 3.6e-73 246.5 0.8 4.1e-73 246.3 0.6 1.0 1 0 0 1 1 1 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.1 gi|345004985|ref|YP_004807838.1| - 4.9e-06 26.4 2.1 9.6e-06 25.5 0.2 2.4 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Pyr_redox_3 PF13738.1 gi|345004985|ref|YP_004807838.1| - 0.00024 21.2 0.7 0.074 13.1 0.5 2.3 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.13 gi|345004985|ref|YP_004807838.1| - 0.00054 19.6 0.4 0.00088 18.9 0.3 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain FAD_oxidored PF12831.2 gi|345004985|ref|YP_004807838.1| - 0.00073 18.7 0.3 0.0011 18.0 0.2 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase ApbA PF02558.11 gi|345004985|ref|YP_004807838.1| - 0.00095 18.6 0.0 0.0015 17.9 0.0 1.3 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA Pyr_redox_2 PF07992.9 gi|345004985|ref|YP_004807838.1| - 0.0011 18.8 1.0 0.0066 16.3 0.7 2.0 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Trp_halogenase PF04820.9 gi|345004985|ref|YP_004807838.1| - 0.0015 17.2 0.8 0.11 11.1 0.1 2.1 2 0 0 2 2 2 2 Tryptophan halogenase FAD_binding_3 PF01494.14 gi|345004985|ref|YP_004807838.1| - 0.0041 16.2 0.3 0.02 13.9 0.4 1.8 2 0 0 2 2 2 1 FAD binding domain GMC_oxred_N PF00732.14 gi|345004985|ref|YP_004807838.1| - 0.0043 16.2 0.0 1.6 7.7 0.0 2.1 2 0 0 2 2 2 2 GMC oxidoreductase Pyr_redox PF00070.22 gi|345004985|ref|YP_004807838.1| - 0.0058 17.0 1.1 0.017 15.5 0.2 2.1 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase YtxH PF12732.2 gi|345004985|ref|YP_004807838.1| - 0.012 15.9 1.4 0.026 14.8 0.9 1.4 1 0 0 1 1 1 0 YtxH-like protein Shikimate_DH PF01488.15 gi|345004985|ref|YP_004807838.1| - 0.17 11.9 0.1 0.29 11.2 0.0 1.3 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase FAD_binding_2 PF00890.19 gi|345004985|ref|YP_004807838.1| - 0.22 10.3 3.3 1.5 7.5 2.3 2.0 1 1 0 1 1 1 0 FAD binding domain GIDA PF01134.17 gi|345004985|ref|YP_004807838.1| - 0.65 8.7 4.1 3.5 6.3 0.6 2.1 2 0 0 2 2 2 0 Glucose inhibited division protein A Creatininase PF02633.9 gi|345004986|ref|YP_004807839.1| - 3e-66 222.9 3.0 3.6e-66 222.6 2.1 1.1 1 0 0 1 1 1 1 Creatinine amidohydrolase 2-Hacid_dh_C PF02826.14 gi|345004987|ref|YP_004807840.1| - 1.1e-13 50.6 0.0 5.9e-13 48.3 0.0 1.9 1 1 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 3HCDH_N PF02737.13 gi|345004988|ref|YP_004807841.1| - 2.4e-65 219.5 0.4 3.7e-65 218.9 0.3 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ECH PF00378.15 gi|345004988|ref|YP_004807841.1| - 8.9e-57 192.0 0.0 1.3e-56 191.5 0.0 1.2 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase family 3HCDH PF00725.17 gi|345004988|ref|YP_004807841.1| - 1.1e-48 163.5 2.1 1.4e-32 111.9 0.0 3.3 3 0 0 3 3 3 2 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NAD_Gly3P_dh_N PF01210.18 gi|345004988|ref|YP_004807841.1| - 2e-09 37.3 0.0 3.6e-09 36.5 0.0 1.4 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NAD_binding_2 PF03446.10 gi|345004988|ref|YP_004807841.1| - 5.9e-06 26.2 0.1 1.4e-05 24.9 0.1 1.7 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.12 gi|345004988|ref|YP_004807841.1| - 0.00026 21.3 1.0 0.0013 19.0 0.7 2.2 1 1 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent ECH_C PF13766.1 gi|345004988|ref|YP_004807841.1| - 0.12 12.5 0.1 0.41 10.7 0.0 2.0 2 0 0 2 2 2 0 2-enoyl-CoA Hydratase C-terminal region ABC_tran PF00005.22 gi|345004989|ref|YP_004807842.1| - 1.5e-32 112.7 0.0 2.2e-32 112.1 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|345004989|ref|YP_004807842.1| - 2.4e-11 44.1 0.0 4.4e-09 36.7 0.0 2.1 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|345004989|ref|YP_004807842.1| - 0.00015 21.1 1.3 0.0026 17.0 0.2 2.1 1 1 1 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.1 gi|345004989|ref|YP_004807842.1| - 0.00074 19.8 0.0 0.00095 19.5 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|345004989|ref|YP_004807842.1| - 0.001 18.5 0.2 0.002 17.6 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_10 PF12846.2 gi|345004989|ref|YP_004807842.1| - 0.013 14.9 0.9 0.074 12.4 0.2 2.0 2 0 0 2 2 2 0 AAA-like domain MutS_V PF00488.16 gi|345004989|ref|YP_004807842.1| - 0.015 14.7 0.0 0.024 14.0 0.0 1.3 1 0 0 1 1 1 0 MutS domain V AAA_30 PF13604.1 gi|345004989|ref|YP_004807842.1| - 0.016 14.8 0.5 0.029 13.9 0.1 1.6 2 0 0 2 2 2 0 AAA domain AAA_16 PF13191.1 gi|345004989|ref|YP_004807842.1| - 0.018 15.0 0.0 0.034 14.1 0.0 1.5 1 1 0 1 1 1 0 AAA ATPase domain Zeta_toxin PF06414.7 gi|345004989|ref|YP_004807842.1| - 0.027 13.5 0.0 0.055 12.5 0.0 1.6 2 0 0 2 2 2 0 Zeta toxin AAA_25 PF13481.1 gi|345004989|ref|YP_004807842.1| - 0.039 13.3 0.0 0.15 11.4 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_15 PF13175.1 gi|345004989|ref|YP_004807842.1| - 0.044 12.8 0.0 0.38 9.7 0.0 1.9 2 0 0 2 2 2 0 AAA ATPase domain MobB PF03205.9 gi|345004989|ref|YP_004807842.1| - 0.056 13.1 0.3 0.099 12.3 0.2 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_22 PF13401.1 gi|345004989|ref|YP_004807842.1| - 0.06 13.4 0.8 0.28 11.3 0.1 2.0 2 0 0 2 2 2 0 AAA domain NB-ARC PF00931.17 gi|345004989|ref|YP_004807842.1| - 0.06 12.1 0.4 0.09 11.6 0.3 1.2 1 0 0 1 1 1 0 NB-ARC domain AAA_33 PF13671.1 gi|345004989|ref|YP_004807842.1| - 0.081 12.7 0.0 0.14 12.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_17 PF13207.1 gi|345004989|ref|YP_004807842.1| - 0.098 13.4 0.3 0.23 12.3 0.2 1.8 1 1 0 1 1 1 0 AAA domain DUF258 PF03193.11 gi|345004989|ref|YP_004807842.1| - 0.1 11.7 0.0 0.15 11.2 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 SbcCD_C PF13558.1 gi|345004989|ref|YP_004807842.1| - 0.14 12.0 2.0 3.6 7.5 1.4 2.3 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit ABC_tran PF00005.22 gi|345004990|ref|YP_004807843.1| - 3.6e-30 105.0 0.0 4.9e-30 104.6 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|345004990|ref|YP_004807843.1| - 3.8e-11 43.4 1.2 2.7e-05 24.3 0.0 2.1 1 1 0 2 2 2 2 AAA domain BCA_ABC_TP_C PF12399.3 gi|345004990|ref|YP_004807843.1| - 1e-09 37.8 0.9 2.8e-09 36.4 0.6 1.8 1 0 0 1 1 1 1 Branched-chain amino acid ATP-binding cassette transporter SMC_N PF02463.14 gi|345004990|ref|YP_004807843.1| - 6.8e-05 22.1 0.8 0.00079 18.7 0.5 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|345004990|ref|YP_004807843.1| - 0.00011 21.6 0.2 0.00023 20.6 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|345004990|ref|YP_004807843.1| - 0.00019 21.8 1.2 0.0002 21.7 0.2 1.5 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|345004990|ref|YP_004807843.1| - 0.0093 16.1 0.5 0.033 14.3 0.3 2.0 1 1 0 1 1 1 1 AAA domain AAA_25 PF13481.1 gi|345004990|ref|YP_004807843.1| - 0.026 13.9 0.1 0.053 12.9 0.1 1.7 1 1 0 1 1 1 0 AAA domain DUF258 PF03193.11 gi|345004990|ref|YP_004807843.1| - 0.05 12.7 0.0 0.092 11.9 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA PF00004.24 gi|345004990|ref|YP_004807843.1| - 0.065 13.4 0.1 0.48 10.6 0.1 2.2 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_30 PF13604.1 gi|345004990|ref|YP_004807843.1| - 0.068 12.7 0.1 0.19 11.2 0.0 2.0 2 1 0 2 2 2 0 AAA domain BPD_transp_2 PF02653.11 gi|345004991|ref|YP_004807844.1| - 3.1e-33 114.8 38.5 3.1e-33 114.8 26.7 3.4 1 1 0 2 2 2 1 Branched-chain amino acid transport system / permease component BPD_transp_2 PF02653.11 gi|345004992|ref|YP_004807845.1| - 2.2e-39 135.0 39.8 2.2e-39 135.0 27.6 1.7 1 1 1 2 2 2 1 Branched-chain amino acid transport system / permease component Acetyltransf_1 PF00583.19 gi|345004993|ref|YP_004807846.1| - 3.2e-18 65.5 0.6 6.5e-18 64.5 0.1 1.7 2 0 0 2 2 2 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|345004993|ref|YP_004807846.1| - 3.1e-11 43.4 0.3 6.4e-11 42.4 0.2 1.6 1 1 1 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|345004993|ref|YP_004807846.1| - 8.4e-11 41.8 0.0 2.1e-10 40.6 0.0 1.6 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|345004993|ref|YP_004807846.1| - 2.7e-07 30.5 0.0 3.6e-07 30.1 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|345004993|ref|YP_004807846.1| - 9e-07 28.9 0.0 1.4e-06 28.3 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|345004993|ref|YP_004807846.1| - 0.00015 21.9 0.0 0.00019 21.6 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|345004993|ref|YP_004807846.1| - 0.00098 18.8 0.0 0.0021 17.7 0.0 1.5 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_9 PF13527.1 gi|345004993|ref|YP_004807846.1| - 0.0012 18.6 0.1 0.0016 18.3 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|345004993|ref|YP_004807846.1| - 0.019 14.8 0.0 0.036 13.9 0.0 1.5 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase DUF3749 PF12568.3 gi|345004993|ref|YP_004807846.1| - 0.055 13.0 0.0 0.088 12.4 0.0 1.3 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain TOBE PF03459.12 gi|345004994|ref|YP_004807847.1| - 4.7e-15 55.4 1.6 4.7e-15 55.4 1.1 2.8 2 1 0 2 2 2 1 TOBE domain HTH_1 PF00126.22 gi|345004994|ref|YP_004807847.1| - 2.8e-09 36.5 0.3 1e-08 34.7 0.2 2.1 1 1 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family SBP_bac_11 PF13531.1 gi|345004995|ref|YP_004807848.1| - 6.9e-29 101.0 0.1 8.4e-29 100.8 0.1 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.20 gi|345004995|ref|YP_004807848.1| - 9.5e-07 28.8 0.5 6e-05 22.9 0.1 2.3 2 0 0 2 2 2 2 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.1 gi|345004995|ref|YP_004807848.1| - 0.0013 18.1 0.0 0.0051 16.1 0.0 1.8 2 0 0 2 2 2 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.1 gi|345004995|ref|YP_004807848.1| - 0.0029 17.3 1.0 0.092 12.4 0.1 2.1 2 0 0 2 2 2 1 Bacterial extracellular solute-binding protein BPD_transp_1 PF00528.17 gi|345004996|ref|YP_004807849.1| - 3.7e-17 62.4 8.9 3.7e-17 62.4 6.1 2.4 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.22 gi|345004997|ref|YP_004807850.1| - 5.1e-29 101.3 0.0 7.7e-29 100.7 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|345004997|ref|YP_004807850.1| - 2.6e-05 24.3 0.0 0.11 12.4 0.0 2.1 1 1 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|345004997|ref|YP_004807850.1| - 9.2e-05 21.7 0.0 0.025 13.8 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_16 PF13191.1 gi|345004997|ref|YP_004807850.1| - 0.00023 21.2 1.0 0.0011 18.9 0.7 2.1 1 1 0 1 1 1 1 AAA ATPase domain TOBE_2 PF08402.5 gi|345004997|ref|YP_004807850.1| - 0.00033 20.5 4.3 0.00048 20.0 1.0 2.6 2 0 0 2 2 2 1 TOBE domain AAA_22 PF13401.1 gi|345004997|ref|YP_004807850.1| - 0.00086 19.4 0.0 0.0049 17.0 0.0 2.2 1 1 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|345004997|ref|YP_004807850.1| - 0.0026 17.4 0.5 0.034 13.9 0.0 2.6 2 1 0 2 2 2 1 Part of AAA domain TOBE PF03459.12 gi|345004997|ref|YP_004807850.1| - 0.0046 17.0 0.2 0.012 15.6 0.2 1.8 1 0 0 1 1 1 1 TOBE domain AAA_5 PF07728.9 gi|345004997|ref|YP_004807850.1| - 0.012 15.3 0.1 0.88 9.2 0.0 2.5 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_29 PF13555.1 gi|345004997|ref|YP_004807850.1| - 0.013 15.0 0.0 0.025 14.0 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain IstB_IS21 PF01695.12 gi|345004997|ref|YP_004807850.1| - 0.042 13.2 0.0 0.093 12.1 0.0 1.5 1 0 0 1 1 1 0 IstB-like ATP binding protein SbcCD_C PF13558.1 gi|345004997|ref|YP_004807850.1| - 0.068 13.0 0.1 0.75 9.7 0.1 2.3 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_33 PF13671.1 gi|345004997|ref|YP_004807850.1| - 0.11 12.3 1.0 0.54 10.1 0.7 2.1 1 1 0 1 1 1 0 AAA domain Ribosomal_S17e PF00833.13 gi|345004998|ref|YP_004807851.1| - 6.1e-14 51.8 0.3 7.6e-14 51.5 0.2 1.0 1 0 0 1 1 1 1 Ribosomal S17 DUF1546 PF07571.8 gi|345004998|ref|YP_004807851.1| - 0.12 12.5 0.0 0.13 12.4 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1546) DAO PF01266.19 gi|345004999|ref|YP_004807852.1| - 9.2e-13 47.8 0.7 8.1e-06 24.9 0.0 2.2 1 1 1 2 2 2 2 FAD dependent oxidoreductase FAD_binding_3 PF01494.14 gi|345004999|ref|YP_004807852.1| - 8.8e-11 41.4 1.0 1.1e-09 37.8 0.7 2.0 1 1 0 1 1 1 1 FAD binding domain FAD_oxidored PF12831.2 gi|345004999|ref|YP_004807852.1| - 8.6e-09 34.9 0.0 1.3e-08 34.3 0.0 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase Trp_halogenase PF04820.9 gi|345004999|ref|YP_004807852.1| - 4.3e-08 32.2 1.1 9.5e-06 24.4 0.0 2.2 2 0 0 2 2 2 2 Tryptophan halogenase HI0933_like PF03486.9 gi|345004999|ref|YP_004807852.1| - 3.1e-07 29.2 0.0 0.00026 19.5 0.1 2.3 2 0 0 2 2 2 2 HI0933-like protein Pyr_redox_2 PF07992.9 gi|345004999|ref|YP_004807852.1| - 3.3e-07 30.3 0.2 2.8e-06 27.3 0.1 2.1 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.19 gi|345004999|ref|YP_004807852.1| - 4.2e-06 25.8 0.7 8.1e-06 24.9 0.5 1.4 1 0 0 1 1 1 1 FAD binding domain NAD_binding_8 PF13450.1 gi|345004999|ref|YP_004807852.1| - 9.8e-05 22.3 0.3 0.00037 20.4 0.2 2.0 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Lycopene_cycl PF05834.7 gi|345004999|ref|YP_004807852.1| - 0.0002 20.3 0.1 0.13 11.1 0.1 2.1 2 0 0 2 2 2 2 Lycopene cyclase protein NAD_binding_9 PF13454.1 gi|345004999|ref|YP_004807852.1| - 0.0002 21.1 0.7 0.23 11.1 0.0 2.4 2 0 0 2 2 2 2 FAD-NAD(P)-binding Thi4 PF01946.12 gi|345004999|ref|YP_004807852.1| - 0.00078 18.6 0.1 0.0026 16.9 0.1 1.8 2 0 0 2 2 2 1 Thi4 family GIDA PF01134.17 gi|345004999|ref|YP_004807852.1| - 0.0012 17.8 0.2 0.0019 17.0 0.2 1.3 1 0 0 1 1 1 1 Glucose inhibited division protein A Pyr_redox PF00070.22 gi|345004999|ref|YP_004807852.1| - 0.028 14.8 0.2 3.6 8.0 0.4 2.5 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|345004999|ref|YP_004807852.1| - 0.064 13.3 0.1 0.89 9.5 0.1 2.1 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase PAC2 PF09754.4 gi|345005000|ref|YP_004807853.1| - 1.2e-29 103.7 0.0 1.5e-29 103.4 0.0 1.0 1 0 0 1 1 1 1 PAC2 family AFG1_ATPase PF03969.11 gi|345005000|ref|YP_004807853.1| - 0.064 12.0 0.9 0.15 10.8 0.1 1.8 2 0 0 2 2 2 0 AFG1-like ATPase MFS_1 PF07690.11 gi|345005001|ref|YP_004807854.1| - 2.7e-38 131.6 62.2 1.2e-24 86.7 21.5 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily LacY_symp PF01306.14 gi|345005001|ref|YP_004807854.1| - 0.00022 19.9 0.3 0.00022 19.9 0.2 2.2 2 1 1 3 3 3 1 LacY proton/sugar symporter YrhK PF14145.1 gi|345005001|ref|YP_004807854.1| - 0.2 11.3 4.8 0.16 11.6 0.9 2.5 2 0 0 2 2 2 0 YrhK-like protein DUF447 PF04289.7 gi|345005002|ref|YP_004807855.1| - 1.1e-39 135.7 0.0 1.3e-39 135.5 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF447) CitG PF01874.11 gi|345005003|ref|YP_004807856.1| - 1.2e-53 182.1 1.9 1.4e-53 181.8 1.3 1.0 1 0 0 1 1 1 1 ATP:dephospho-CoA triphosphoribosyl transferase Dus PF01207.12 gi|345005004|ref|YP_004807857.1| - 1.1e-10 40.8 0.7 5.6e-10 38.5 0.5 1.8 1 1 0 1 1 1 1 Dihydrouridine synthase (Dus) His_biosynth PF00977.16 gi|345005004|ref|YP_004807857.1| - 1.1e-05 24.8 0.1 2.2e-05 23.8 0.1 1.5 1 0 0 1 1 1 1 Histidine biosynthesis protein NMO PF03060.10 gi|345005004|ref|YP_004807857.1| - 0.0002 20.6 0.3 0.00031 20.0 0.2 1.2 1 0 0 1 1 1 1 Nitronate monooxygenase PcrB PF01884.12 gi|345005004|ref|YP_004807857.1| - 0.0068 15.6 0.1 0.016 14.4 0.0 1.6 1 1 0 1 1 1 1 PcrB family IMPDH PF00478.20 gi|345005004|ref|YP_004807857.1| - 0.042 12.7 0.1 0.047 12.5 0.1 1.2 1 0 0 1 1 1 0 IMP dehydrogenase / GMP reductase domain Radical_SAM PF04055.16 gi|345005004|ref|YP_004807857.1| - 0.046 13.8 0.0 1.6 8.8 0.0 2.6 1 1 0 1 1 1 0 Radical SAM superfamily NmrA PF05368.8 gi|345005004|ref|YP_004807857.1| - 0.069 12.3 0.3 0.1 11.8 0.2 1.2 1 0 0 1 1 1 0 NmrA-like family Ribul_P_3_epim PF00834.14 gi|345005004|ref|YP_004807857.1| - 0.13 11.3 0.2 0.42 9.6 0.0 1.8 1 1 1 2 2 2 0 Ribulose-phosphate 3 epimerase family G3P_antiterm PF04309.7 gi|345005004|ref|YP_004807857.1| - 0.15 11.1 0.0 0.23 10.4 0.0 1.3 1 0 0 1 1 1 0 Glycerol-3-phosphate responsive antiterminator UPF0052 PF01933.13 gi|345005005|ref|YP_004807858.1| - 5.5e-41 140.8 0.0 8.3e-41 140.2 0.0 1.2 1 1 0 1 1 1 1 Uncharacterised protein family UPF0052 HD PF01966.17 gi|345005006|ref|YP_004807859.1| - 6.1e-12 45.6 4.2 1.7e-11 44.1 2.9 1.8 1 0 0 1 1 1 1 HD domain F420_ligase PF01996.11 gi|345005007|ref|YP_004807860.1| - 4.3e-65 218.9 0.0 4.9e-65 218.7 0.0 1.0 1 0 0 1 1 1 1 F420-0:Gamma-glutamyl ligase Bac_luciferase PF00296.15 gi|345005008|ref|YP_004807861.1| - 1.5e-59 201.6 14.8 1.9e-59 201.2 10.3 1.0 1 0 0 1 1 1 1 Luciferase-like monooxygenase DUF3123 PF11321.3 gi|345005008|ref|YP_004807861.1| - 0.018 15.2 0.5 0.48 10.7 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3123) NurA PF09376.5 gi|345005010|ref|YP_004807863.1| - 1.4e-26 93.5 0.0 1.6e-26 93.2 0.0 1.1 1 0 0 1 1 1 1 NurA domain AAA_10 PF12846.2 gi|345005012|ref|YP_004807865.1| - 2.4e-20 73.1 0.0 5.1e-20 72.1 0.0 1.4 1 1 0 1 1 1 1 AAA-like domain DUF87 PF01935.12 gi|345005012|ref|YP_004807865.1| - 4.2e-10 39.8 0.0 9.1e-10 38.7 0.0 1.5 2 0 0 2 2 2 1 Domain of unknown function DUF87 DUF853 PF05872.7 gi|345005012|ref|YP_004807865.1| - 3.3e-07 29.0 0.1 0.00045 18.7 0.0 2.2 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) FtsK_SpoIIIE PF01580.13 gi|345005012|ref|YP_004807865.1| - 2.7e-05 23.7 0.0 0.028 13.8 0.0 2.4 2 0 0 2 2 2 2 FtsK/SpoIIIE family AAA_19 PF13245.1 gi|345005012|ref|YP_004807865.1| - 0.0043 16.7 0.0 0.01 15.5 0.0 1.6 1 0 0 1 1 1 1 Part of AAA domain DEAD PF00270.24 gi|345005012|ref|YP_004807865.1| - 0.013 14.9 0.0 0.43 10.0 0.0 2.2 1 1 0 2 2 2 0 DEAD/DEAH box helicase AAA_22 PF13401.1 gi|345005012|ref|YP_004807865.1| - 0.013 15.6 0.0 0.088 12.9 0.0 2.2 2 0 0 2 2 2 0 AAA domain Zot PF05707.7 gi|345005012|ref|YP_004807865.1| - 0.015 14.7 0.0 0.3 10.5 0.0 2.2 2 0 0 2 2 2 0 Zonular occludens toxin (Zot) TrwB_AAD_bind PF10412.4 gi|345005012|ref|YP_004807865.1| - 0.021 13.4 0.0 0.042 12.4 0.0 1.4 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain AAA PF00004.24 gi|345005012|ref|YP_004807865.1| - 0.025 14.7 0.0 0.72 10.0 0.0 2.4 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) T2SE PF00437.15 gi|345005012|ref|YP_004807865.1| - 0.04 12.8 0.0 0.074 11.9 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein ALF PF03752.8 gi|345005012|ref|YP_004807865.1| - 0.072 12.9 0.4 3.2 7.6 0.0 2.9 2 0 0 2 2 2 0 Short repeats of unknown function AAA_16 PF13191.1 gi|345005012|ref|YP_004807865.1| - 0.078 12.9 0.1 0.85 9.5 0.0 2.4 1 1 0 1 1 1 0 AAA ATPase domain Zeta_toxin PF06414.7 gi|345005012|ref|YP_004807865.1| - 0.11 11.5 0.0 0.26 10.3 0.0 1.6 1 0 0 1 1 1 0 Zeta toxin Pyridox_oxidase PF01243.15 gi|345005013|ref|YP_004807866.1| - 3.6e-11 42.9 0.0 4.6e-11 42.5 0.0 1.2 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Pyridox_ox_2 PF12900.2 gi|345005013|ref|YP_004807866.1| - 9.7e-11 41.6 0.2 1.1e-10 41.4 0.2 1.0 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Jiraiya PF15038.1 gi|345005014|ref|YP_004807867.1| - 0.4 10.0 2.2 0.52 9.7 1.5 1.1 1 0 0 1 1 1 0 Jiraiya Archease PF01951.11 gi|345005016|ref|YP_004807869.1| - 1.3e-26 93.1 0.0 1.5e-26 93.0 0.0 1.0 1 0 0 1 1 1 1 Archease protein family (MTH1598/TM1083) GCHY-1 PF02649.9 gi|345005017|ref|YP_004807870.1| - 1.9e-85 286.4 0.3 2.1e-85 286.2 0.2 1.0 1 0 0 1 1 1 1 Type I GTP cyclohydrolase folE2 FolB PF02152.13 gi|345005017|ref|YP_004807870.1| - 0.026 14.6 0.0 0.23 11.6 0.0 2.1 2 0 0 2 2 2 0 Dihydroneopterin aldolase TrmB PF01978.14 gi|345005018|ref|YP_004807871.1| - 7.7e-21 73.5 0.1 1.7e-20 72.4 0.1 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB PadR PF03551.9 gi|345005018|ref|YP_004807871.1| - 0.0038 16.9 0.0 0.0092 15.7 0.0 1.6 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_IclR PF09339.5 gi|345005018|ref|YP_004807871.1| - 0.019 14.5 0.1 0.044 13.3 0.0 1.7 1 0 0 1 1 1 0 IclR helix-turn-helix domain MarR_2 PF12802.2 gi|345005018|ref|YP_004807871.1| - 0.027 14.1 0.2 0.065 12.9 0.1 1.7 1 0 0 1 1 1 0 MarR family HTH_20 PF12840.2 gi|345005018|ref|YP_004807871.1| - 0.034 13.9 0.1 0.093 12.5 0.0 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain MerR-DNA-bind PF09278.6 gi|345005018|ref|YP_004807871.1| - 0.042 14.2 1.4 0.085 13.2 0.4 2.0 2 0 0 2 2 2 0 MerR, DNA binding FUSC PF04632.7 gi|345005018|ref|YP_004807871.1| - 0.11 10.9 2.4 0.12 10.7 1.7 1.1 1 0 0 1 1 1 0 Fusaric acid resistance protein family DUF2250 PF10007.4 gi|345005018|ref|YP_004807871.1| - 0.14 12.1 0.0 0.26 11.2 0.0 1.5 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) Thioredox_DsbH PF03190.10 gi|345005019|ref|YP_004807872.1| - 3.6e-26 91.8 0.0 5.5e-26 91.2 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF255 Thioredoxin_7 PF13899.1 gi|345005019|ref|YP_004807872.1| - 9.4e-12 44.7 0.0 1.6e-11 44.0 0.0 1.4 1 0 0 1 1 1 1 Thioredoxin-like GlcNAc_2-epim PF07221.6 gi|345005019|ref|YP_004807872.1| - 8.2e-07 28.3 0.5 0.00091 18.3 0.1 2.3 1 1 1 2 2 2 2 N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase) Thioredoxin PF00085.15 gi|345005019|ref|YP_004807872.1| - 1.6e-05 24.5 0.0 2.8e-05 23.7 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.1 gi|345005019|ref|YP_004807872.1| - 6.5e-05 23.0 0.0 0.00029 21.0 0.0 1.9 1 1 0 1 1 1 1 Thioredoxin-like domain Glyco_hydro_76 PF03663.9 gi|345005019|ref|YP_004807872.1| - 0.00032 20.2 0.3 0.43 9.9 0.0 2.9 2 1 1 3 3 3 2 Glycosyl hydrolase family 76 Glyco_hydro_88 PF07470.8 gi|345005019|ref|YP_004807872.1| - 0.00034 19.7 0.1 0.13 11.3 0.0 3.0 2 2 0 2 2 2 2 Glycosyl Hydrolase Family 88 Fe-S_biosyn PF01521.15 gi|345005020|ref|YP_004807873.1| - 1.4e-16 60.3 0.0 1.6e-16 60.2 0.0 1.0 1 0 0 1 1 1 1 Iron-sulphur cluster biosynthesis Methyltransf_23 PF13489.1 gi|345005021|ref|YP_004807874.1| - 1.2e-08 34.8 0.0 2.5e-08 33.8 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|345005021|ref|YP_004807874.1| - 3.6e-08 33.9 0.0 6.6e-08 33.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|345005021|ref|YP_004807874.1| - 2.6e-07 31.0 0.0 4.8e-07 30.1 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|345005021|ref|YP_004807874.1| - 1.1e-06 28.6 2.2 3.2e-06 27.1 0.9 2.1 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|345005021|ref|YP_004807874.1| - 1.2e-05 25.6 0.0 2.2e-05 24.8 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|345005021|ref|YP_004807874.1| - 0.00022 20.6 0.0 0.00044 19.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_25 PF13649.1 gi|345005021|ref|YP_004807874.1| - 0.00039 20.7 0.0 0.00082 19.7 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|345005021|ref|YP_004807874.1| - 0.026 14.0 0.0 0.052 13.1 0.0 1.4 1 1 0 1 1 1 0 Methyltransferase domain MetW PF07021.7 gi|345005021|ref|YP_004807874.1| - 0.11 11.8 0.0 0.17 11.2 0.0 1.2 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW Histidinol_dh PF00815.15 gi|345005022|ref|YP_004807875.1| - 8.7e-151 502.2 0.8 1e-150 501.9 0.5 1.0 1 0 0 1 1 1 1 Histidinol dehydrogenase Spore_YhcN_YlaJ PF09580.5 gi|345005022|ref|YP_004807875.1| - 0.058 13.5 0.2 0.13 12.4 0.1 1.6 1 0 0 1 1 1 0 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) CSD PF00313.17 gi|345005023|ref|YP_004807876.1| - 5e-21 74.2 0.2 5.4e-21 74.1 0.1 1.0 1 0 0 1 1 1 1 'Cold-shock' DNA-binding domain CusF_Ec PF11604.3 gi|345005023|ref|YP_004807876.1| - 0.013 15.3 0.0 0.016 15.0 0.0 1.3 1 0 0 1 1 1 0 Copper binding periplasmic protein CusF S1-like PF14444.1 gi|345005023|ref|YP_004807876.1| - 0.017 14.8 3.4 0.041 13.6 2.3 1.6 1 1 0 1 1 1 0 S1-like OB_RNB PF08206.6 gi|345005023|ref|YP_004807876.1| - 0.059 12.8 2.6 0.086 12.3 1.8 1.3 1 0 0 1 1 1 0 Ribonuclease B OB domain Methyltransf_25 PF13649.1 gi|345005024|ref|YP_004807877.1| - 1e-14 54.6 0.1 1.9e-14 53.8 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|345005024|ref|YP_004807877.1| - 5.5e-13 49.2 0.1 8.3e-13 48.6 0.1 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|345005024|ref|YP_004807877.1| - 1.2e-12 47.7 0.2 1.6e-12 47.4 0.2 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|345005024|ref|YP_004807877.1| - 2.9e-11 43.9 0.2 4.6e-11 43.2 0.2 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|345005024|ref|YP_004807877.1| - 1.7e-10 40.9 0.3 2.9e-10 40.1 0.1 1.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|345005024|ref|YP_004807877.1| - 2.6e-09 36.8 0.0 2.8e-09 36.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain MetW PF07021.7 gi|345005024|ref|YP_004807877.1| - 1.2e-07 31.3 0.0 1.9e-07 30.6 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_12 PF08242.7 gi|345005024|ref|YP_004807877.1| - 1.1e-06 28.9 0.1 2e-06 28.1 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_24 PF13578.1 gi|345005024|ref|YP_004807877.1| - 0.00054 20.7 0.2 0.0013 19.5 0.1 1.7 1 1 1 2 2 2 1 Methyltransferase domain DUF938 PF06080.7 gi|345005024|ref|YP_004807877.1| - 0.0078 15.7 0.0 0.018 14.6 0.0 1.7 1 1 0 1 1 1 1 Protein of unknown function (DUF938) Spermine_synth PF01564.12 gi|345005024|ref|YP_004807877.1| - 0.013 14.4 0.0 0.016 14.1 0.0 1.1 1 0 0 1 1 1 0 Spermine/spermidine synthase CMAS PF02353.15 gi|345005024|ref|YP_004807877.1| - 0.024 13.7 0.0 0.028 13.5 0.0 1.1 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase Pox_MCEL PF03291.11 gi|345005024|ref|YP_004807877.1| - 0.15 10.9 0.0 0.18 10.6 0.0 1.1 1 0 0 1 1 1 0 mRNA capping enzyme TrmB PF01978.14 gi|345005025|ref|YP_004807878.1| - 4.2e-17 61.6 0.0 6.5e-17 61.0 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Regulator_TrmB PF11495.3 gi|345005025|ref|YP_004807878.1| - 6.4e-06 25.3 0.0 8.3e-06 24.9 0.0 1.1 1 0 0 1 1 1 1 Archaeal transcriptional regulator TrmB HTH_IclR PF09339.5 gi|345005025|ref|YP_004807878.1| - 0.00031 20.2 0.0 0.00072 19.0 0.0 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_20 PF12840.2 gi|345005025|ref|YP_004807878.1| - 0.00051 19.7 0.0 0.0015 18.2 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain Rrf2 PF02082.15 gi|345005025|ref|YP_004807878.1| - 0.021 14.9 0.0 0.057 13.5 0.0 1.7 2 0 0 2 2 2 0 Transcriptional regulator D-ser_dehydrat PF14031.1 gi|345005025|ref|YP_004807878.1| - 0.027 14.6 0.4 0.17 12.0 0.1 2.3 2 1 1 3 3 3 0 Putative serine dehydratase domain MarR_2 PF12802.2 gi|345005025|ref|YP_004807878.1| - 0.07 12.8 0.0 0.22 11.2 0.0 1.8 1 0 0 1 1 1 0 MarR family DUF2250 PF10007.4 gi|345005025|ref|YP_004807878.1| - 0.11 12.4 0.0 0.17 11.8 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) MMPL PF03176.10 gi|345005026|ref|YP_004807879.1| - 4.2e-36 124.3 41.9 5.1e-20 71.4 11.4 3.7 3 2 0 4 4 4 2 MMPL family Sterol-sensing PF12349.3 gi|345005026|ref|YP_004807879.1| - 7.3e-10 38.4 10.8 7.6e-05 22.2 0.7 2.6 2 1 0 2 2 2 2 Sterol-sensing domain of SREBP cleavage-activation Patched PF02460.13 gi|345005026|ref|YP_004807879.1| - 8.6e-10 37.1 15.3 3.8e-06 25.1 3.0 2.2 2 0 0 2 2 2 2 Patched family SecD_SecF PF02355.11 gi|345005026|ref|YP_004807879.1| - 2.1e-06 27.0 22.0 0.00057 19.1 3.4 2.6 2 0 0 2 2 2 2 Protein export membrane protein ACR_tran PF00873.14 gi|345005026|ref|YP_004807879.1| - 1.2 6.4 28.4 0.095 10.0 5.6 2.7 2 1 0 2 2 2 0 AcrB/AcrD/AcrF family DUF2422 PF10337.4 gi|345005026|ref|YP_004807879.1| - 8.2 5.0 8.3 6.3 5.4 0.8 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF2422) zf-ribbon_3 PF13248.1 gi|345005027|ref|YP_004807880.1| - 0.0002 20.4 1.9 0.0003 19.8 1.3 1.3 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.2 gi|345005027|ref|YP_004807880.1| - 0.00035 20.3 0.8 0.00048 19.8 0.6 1.3 1 0 0 1 1 1 1 Double zinc ribbon CAP-ZIP_m PF15255.1 gi|345005027|ref|YP_004807880.1| - 0.03 14.2 0.2 0.042 13.7 0.1 1.2 1 0 0 1 1 1 0 WASH complex subunit CAP-Z interacting, central region DUF3260 PF11658.3 gi|345005027|ref|YP_004807880.1| - 0.046 11.8 0.0 0.056 11.5 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3260) zinc_ribbon_2 PF13240.1 gi|345005027|ref|YP_004807880.1| - 0.062 12.8 2.2 0.094 12.2 1.5 1.3 1 0 0 1 1 1 0 zinc-ribbon domain TM2 PF05154.11 gi|345005027|ref|YP_004807880.1| - 0.079 13.1 3.0 0.079 13.1 1.0 1.7 2 0 0 2 2 2 0 TM2 domain UPF0547 PF10571.4 gi|345005027|ref|YP_004807880.1| - 0.6 9.8 3.3 1.4 8.7 2.3 1.7 1 0 0 1 1 1 0 Uncharacterised protein family UPF0547 Zn-ribbon_8 PF09723.5 gi|345005027|ref|YP_004807880.1| - 3.8 7.5 5.9 1.4 8.9 0.7 2.1 2 0 0 2 2 2 0 Zinc ribbon domain DUF1360 PF07098.6 gi|345005027|ref|YP_004807880.1| - 9.7 5.9 7.3 1.2 8.8 0.1 2.5 2 1 1 3 3 3 0 Protein of unknown function (DUF1360) DUF108 PF01958.13 gi|345005028|ref|YP_004807881.1| - 3.9e-17 62.2 0.0 8e-17 61.2 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function DUF108 NAD_binding_3 PF03447.11 gi|345005028|ref|YP_004807881.1| - 2.9e-11 43.7 0.0 7.4e-11 42.4 0.0 1.7 2 0 0 2 2 2 1 Homoserine dehydrogenase, NAD binding domain DapB_N PF01113.15 gi|345005028|ref|YP_004807881.1| - 0.00026 20.9 0.0 0.00056 19.8 0.0 1.6 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus 2-Hacid_dh_C PF02826.14 gi|345005028|ref|YP_004807881.1| - 0.016 14.4 0.0 0.026 13.6 0.0 1.3 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Gp_dh_N PF00044.19 gi|345005028|ref|YP_004807881.1| - 0.034 14.0 0.0 0.064 13.2 0.0 1.6 1 0 0 1 1 1 0 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Semialdhyde_dh PF01118.19 gi|345005028|ref|YP_004807881.1| - 0.041 14.1 0.0 0.13 12.5 0.0 1.8 1 1 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain F420_oxidored PF03807.12 gi|345005028|ref|YP_004807881.1| - 0.083 13.3 0.1 0.2 12.1 0.0 1.7 2 0 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent ABC_tran PF00005.22 gi|345005029|ref|YP_004807882.1| - 5e-32 111.0 0.0 8.6e-32 110.3 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|345005029|ref|YP_004807882.1| - 5.1e-08 33.2 0.0 0.0018 18.2 0.0 2.1 1 1 1 2 2 2 2 AAA domain TOBE PF03459.12 gi|345005029|ref|YP_004807882.1| - 0.0006 19.8 0.6 0.022 14.8 0.1 3.0 3 1 0 3 3 2 1 TOBE domain TOBE_2 PF08402.5 gi|345005029|ref|YP_004807882.1| - 0.0006 19.7 0.1 0.0021 17.9 0.1 2.0 2 0 0 2 2 1 1 TOBE domain AAA_22 PF13401.1 gi|345005029|ref|YP_004807882.1| - 0.0012 19.0 0.0 0.0032 17.5 0.0 1.7 1 0 0 1 1 1 1 AAA domain AAA PF00004.24 gi|345005029|ref|YP_004807882.1| - 0.0021 18.2 0.0 0.0044 17.2 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.1 gi|345005029|ref|YP_004807882.1| - 0.0031 17.5 0.5 0.0079 16.1 0.0 1.8 3 0 0 3 3 1 1 AAA ATPase domain AAA_14 PF13173.1 gi|345005029|ref|YP_004807882.1| - 0.0041 17.0 0.0 0.015 15.1 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA_28 PF13521.1 gi|345005029|ref|YP_004807882.1| - 0.015 15.2 0.2 0.035 14.0 0.2 1.6 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.1 gi|345005029|ref|YP_004807882.1| - 0.016 15.1 0.0 0.038 13.8 0.0 1.7 1 0 0 1 1 1 0 AAA domain Miro PF08477.8 gi|345005029|ref|YP_004807882.1| - 0.017 15.6 0.0 0.082 13.4 0.0 2.0 2 0 0 2 2 2 0 Miro-like protein Zeta_toxin PF06414.7 gi|345005029|ref|YP_004807882.1| - 0.03 13.4 0.0 0.059 12.4 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin SMC_N PF02463.14 gi|345005029|ref|YP_004807882.1| - 0.03 13.5 0.0 0.091 11.9 0.0 1.7 1 1 0 1 1 1 0 RecF/RecN/SMC N terminal domain Rad17 PF03215.10 gi|345005029|ref|YP_004807882.1| - 0.045 12.4 0.0 0.066 11.8 0.0 1.1 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein DUF258 PF03193.11 gi|345005029|ref|YP_004807882.1| - 0.051 12.7 0.0 0.09 11.9 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_17 PF13207.1 gi|345005029|ref|YP_004807882.1| - 0.055 14.2 0.7 0.19 12.5 0.5 1.9 1 1 0 1 1 1 0 AAA domain AAA_19 PF13245.1 gi|345005029|ref|YP_004807882.1| - 0.059 13.1 0.2 0.45 10.3 0.1 2.3 2 0 0 2 2 2 0 Part of AAA domain AAA_15 PF13175.1 gi|345005029|ref|YP_004807882.1| - 0.064 12.2 0.0 1.9 7.4 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain AAA_30 PF13604.1 gi|345005029|ref|YP_004807882.1| - 0.064 12.8 0.0 0.12 11.9 0.0 1.3 1 0 0 1 1 1 0 AAA domain SRP54 PF00448.17 gi|345005029|ref|YP_004807882.1| - 0.067 12.6 0.0 0.11 11.8 0.0 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_25 PF13481.1 gi|345005029|ref|YP_004807882.1| - 0.085 12.2 0.0 0.22 10.9 0.0 1.7 1 0 0 1 1 1 0 AAA domain NACHT PF05729.7 gi|345005029|ref|YP_004807882.1| - 0.087 12.4 0.2 0.28 10.8 0.1 1.9 1 1 1 2 2 2 0 NACHT domain AAA_18 PF13238.1 gi|345005029|ref|YP_004807882.1| - 0.092 13.0 0.1 0.24 11.7 0.0 1.7 2 0 0 2 2 1 0 AAA domain AAA_5 PF07728.9 gi|345005029|ref|YP_004807882.1| - 0.1 12.3 0.1 0.31 10.7 0.0 1.7 2 0 0 2 2 1 0 AAA domain (dynein-related subfamily) AAA_29 PF13555.1 gi|345005029|ref|YP_004807882.1| - 0.12 11.9 0.0 0.29 10.7 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain T2SE PF00437.15 gi|345005029|ref|YP_004807882.1| - 0.13 11.1 0.1 0.35 9.7 0.0 1.7 2 0 0 2 2 2 0 Type II/IV secretion system protein AAA_23 PF13476.1 gi|345005029|ref|YP_004807882.1| - 0.14 12.4 0.0 0.23 11.7 0.0 1.3 1 0 0 1 1 1 0 AAA domain BPD_transp_1 PF00528.17 gi|345005030|ref|YP_004807883.1| - 3.8e-19 68.9 19.5 3.8e-19 68.9 13.5 2.0 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.17 gi|345005031|ref|YP_004807884.1| - 9.1e-18 64.4 21.8 9.1e-18 64.4 15.1 1.7 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component DUF3938 PF13074.1 gi|345005031|ref|YP_004807884.1| - 0.3 10.9 2.5 1.4 8.8 0.3 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF3938) PsaX PF08078.7 gi|345005031|ref|YP_004807884.1| - 2.3 8.1 7.3 13 5.7 2.3 3.1 2 0 0 2 2 2 0 PsaX family SBP_bac_8 PF13416.1 gi|345005032|ref|YP_004807885.1| - 2.1e-13 50.6 0.0 4e-13 49.7 0.0 1.4 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.20 gi|345005032|ref|YP_004807885.1| - 4.3e-10 39.8 0.2 6.4e-10 39.2 0.1 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein TAT_signal PF10518.4 gi|345005032|ref|YP_004807885.1| - 0.03 14.3 0.4 0.03 14.3 0.3 1.9 2 0 0 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence ABC_tran PF00005.22 gi|345005033|ref|YP_004807886.1| - 1.3e-34 119.3 0.0 1.9e-34 118.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|345005033|ref|YP_004807886.1| - 1.6e-11 44.7 0.0 1.6e-06 28.2 0.0 2.1 1 1 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|345005033|ref|YP_004807886.1| - 1.5e-07 30.9 0.0 0.00098 18.4 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|345005033|ref|YP_004807886.1| - 1.2e-05 24.7 0.1 2.6e-05 23.6 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_10 PF12846.2 gi|345005033|ref|YP_004807886.1| - 0.00015 21.3 0.3 0.00035 20.1 0.2 1.5 1 1 0 1 1 1 1 AAA-like domain DUF258 PF03193.11 gi|345005033|ref|YP_004807886.1| - 0.0015 17.6 0.1 0.0035 16.5 0.1 1.5 1 1 0 1 1 1 1 Protein of unknown function, DUF258 AAA_33 PF13671.1 gi|345005033|ref|YP_004807886.1| - 0.0021 17.9 1.4 0.019 14.8 0.9 2.2 1 1 0 1 1 1 1 AAA domain NTPase_1 PF03266.10 gi|345005033|ref|YP_004807886.1| - 0.0032 17.2 0.6 2.3 7.8 0.1 2.2 2 0 0 2 2 2 2 NTPase SbcCD_C PF13558.1 gi|345005033|ref|YP_004807886.1| - 0.0052 16.6 0.1 0.047 13.6 0.1 2.3 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_16 PF13191.1 gi|345005033|ref|YP_004807886.1| - 0.0053 16.7 1.8 0.028 14.3 1.3 2.2 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|345005033|ref|YP_004807886.1| - 0.0059 16.7 0.2 0.092 12.8 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_17 PF13207.1 gi|345005033|ref|YP_004807886.1| - 0.0088 16.8 0.2 0.07 13.9 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_23 PF13476.1 gi|345005033|ref|YP_004807886.1| - 0.018 15.3 0.0 0.051 13.8 0.0 1.6 2 0 0 2 2 2 0 AAA domain AAA_25 PF13481.1 gi|345005033|ref|YP_004807886.1| - 0.019 14.3 0.1 0.086 12.2 0.0 1.9 2 0 0 2 2 2 0 AAA domain MMR_HSR1 PF01926.18 gi|345005033|ref|YP_004807886.1| - 0.069 13.1 0.3 0.35 10.8 0.2 2.2 1 1 0 1 1 1 0 50S ribosome-binding GTPase MobB PF03205.9 gi|345005033|ref|YP_004807886.1| - 0.11 12.2 0.1 0.26 11.0 0.0 1.7 1 1 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_18 PF13238.1 gi|345005033|ref|YP_004807886.1| - 0.12 12.7 0.2 2.1 8.6 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_19 PF13245.1 gi|345005033|ref|YP_004807886.1| - 0.18 11.5 1.3 1.1 9.0 0.0 2.5 3 0 0 3 3 3 0 Part of AAA domain MacB_PCD PF12704.2 gi|345005034|ref|YP_004807887.1| - 2.2e-35 122.3 1.6 2.2e-35 122.3 1.1 2.0 2 0 0 2 2 2 1 MacB-like periplasmic core domain FtsX PF02687.16 gi|345005034|ref|YP_004807887.1| - 4.2e-27 94.3 6.8 4.2e-27 94.3 4.7 2.1 2 0 0 2 2 2 1 FtsX-like permease family DUF677 PF05055.7 gi|345005034|ref|YP_004807887.1| - 0.17 10.4 1.0 0.31 9.6 0.7 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF677) HIG_1_N PF04588.8 gi|345005035|ref|YP_004807888.1| - 0.14 11.9 10.2 2.1 8.1 1.0 2.9 2 1 0 2 2 2 0 Hypoxia induced protein conserved region Yip1 PF04893.12 gi|345005035|ref|YP_004807888.1| - 0.3 10.5 17.8 0.4 10.1 12.3 1.1 1 0 0 1 1 1 0 Yip1 domain DDE_Tnp_IS240 PF13610.1 gi|345005036|ref|YP_004807889.1| - 1.1e-10 41.6 0.3 1.8e-10 40.9 0.2 1.4 1 1 0 1 1 1 1 DDE domain Transposase_mut PF00872.13 gi|345005036|ref|YP_004807889.1| - 0.0079 14.7 0.3 0.66 8.4 0.0 2.5 2 1 1 3 3 3 2 Transposase, Mutator family DDE_3 PF13358.1 gi|345005036|ref|YP_004807889.1| - 0.041 13.6 0.1 0.18 11.5 0.0 1.9 2 0 0 2 2 2 0 DDE superfamily endonuclease Methyltransf_11 PF08241.7 gi|345005037|ref|YP_004807890.1| - 6.5e-19 68.2 0.0 9.4e-19 67.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|345005037|ref|YP_004807890.1| - 1.5e-10 41.6 0.0 2.2e-10 41.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|345005037|ref|YP_004807890.1| - 2.4e-10 40.2 0.0 2.9e-10 39.9 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|345005037|ref|YP_004807890.1| - 1.3e-09 38.2 0.0 2.1e-09 37.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|345005037|ref|YP_004807890.1| - 5.9e-09 35.9 0.1 9.9e-09 35.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|345005037|ref|YP_004807890.1| - 2e-08 33.6 0.0 2.8e-08 33.1 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_23 PF13489.1 gi|345005037|ref|YP_004807890.1| - 1.4e-07 31.3 0.0 2.3e-07 30.6 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.15 gi|345005037|ref|YP_004807890.1| - 4.1e-07 29.2 0.0 5.3e-07 28.9 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_12 PF08242.7 gi|345005037|ref|YP_004807890.1| - 0.00015 22.2 0.0 0.00022 21.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain FtsJ PF01728.14 gi|345005037|ref|YP_004807890.1| - 0.00034 20.6 0.0 0.00067 19.6 0.0 1.5 1 1 0 1 1 1 1 FtsJ-like methyltransferase DREV PF05219.7 gi|345005037|ref|YP_004807890.1| - 0.0008 18.3 0.0 0.001 18.0 0.0 1.2 1 0 0 1 1 1 1 DREV methyltransferase Methyltransf_8 PF05148.10 gi|345005037|ref|YP_004807890.1| - 0.0013 18.3 0.0 0.003 17.2 0.0 1.8 1 1 0 1 1 1 1 Hypothetical methyltransferase Met_10 PF02475.11 gi|345005037|ref|YP_004807890.1| - 0.0091 15.5 0.0 0.012 15.2 0.0 1.2 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_24 PF13578.1 gi|345005037|ref|YP_004807890.1| - 0.016 15.9 0.0 0.034 14.9 0.0 1.5 1 1 0 1 1 1 0 Methyltransferase domain Methyltransf_29 PF03141.11 gi|345005037|ref|YP_004807890.1| - 0.11 10.8 0.0 0.12 10.7 0.0 1.1 1 0 0 1 1 1 0 Putative S-adenosyl-L-methionine-dependent methyltransferase Semialdhyde_dhC PF02774.13 gi|345005038|ref|YP_004807891.1| - 6.5e-31 107.6 0.0 9.1e-31 107.1 0.0 1.2 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, dimerisation domain Semialdhyde_dh PF01118.19 gi|345005038|ref|YP_004807891.1| - 1.6e-30 105.9 0.0 5.9e-30 104.0 0.0 1.9 2 0 0 2 2 2 1 Semialdehyde dehydrogenase, NAD binding domain DXP_reductoisom PF02670.11 gi|345005038|ref|YP_004807891.1| - 0.00084 19.8 0.0 0.0019 18.7 0.0 1.6 1 0 0 1 1 1 1 1-deoxy-D-xylulose 5-phosphate reductoisomerase DapB_N PF01113.15 gi|345005038|ref|YP_004807891.1| - 0.0015 18.4 0.0 0.0027 17.6 0.0 1.5 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus Saccharop_dh PF03435.13 gi|345005038|ref|YP_004807891.1| - 0.0093 14.9 0.0 0.012 14.5 0.0 1.2 1 0 0 1 1 1 1 Saccharopine dehydrogenase GFO_IDH_MocA PF01408.17 gi|345005038|ref|YP_004807891.1| - 0.034 14.6 0.0 0.066 13.7 0.0 1.5 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold NAD_binding_10 PF13460.1 gi|345005038|ref|YP_004807891.1| - 0.1 12.5 0.0 0.29 11.1 0.0 1.8 2 1 0 2 2 2 0 NADH(P)-binding 2-Hacid_dh_C PF02826.14 gi|345005039|ref|YP_004807892.1| - 2.6e-53 179.7 0.0 9.5e-53 177.9 0.0 1.7 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.25 gi|345005039|ref|YP_004807892.1| - 3.8e-13 49.0 0.0 5e-13 48.6 0.0 1.1 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain TrkA_N PF02254.13 gi|345005039|ref|YP_004807892.1| - 0.0012 18.8 0.0 2.5 8.1 0.0 3.3 3 0 0 3 3 3 2 TrkA-N domain NAD_binding_2 PF03446.10 gi|345005039|ref|YP_004807892.1| - 0.0035 17.2 0.0 0.0056 16.5 0.0 1.3 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.12 gi|345005039|ref|YP_004807892.1| - 0.012 16.0 0.0 0.075 13.4 0.0 2.2 2 0 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent ThiF PF00899.16 gi|345005039|ref|YP_004807892.1| - 0.016 14.9 0.7 0.057 13.2 0.3 2.0 2 0 0 2 2 2 0 ThiF family IlvN PF07991.7 gi|345005039|ref|YP_004807892.1| - 0.039 13.3 0.0 1.3 8.3 0.0 2.3 2 1 0 2 2 2 0 Acetohydroxy acid isomeroreductase, catalytic domain SnoaL_2 PF12680.2 gi|345005040|ref|YP_004807893.1| - 1.8e-18 66.8 0.8 2.1e-18 66.5 0.5 1.0 1 0 0 1 1 1 1 SnoaL-like domain SnoaL PF07366.7 gi|345005040|ref|YP_004807893.1| - 3.5e-11 42.7 0.2 6.6e-11 41.8 0.1 1.4 1 1 0 1 1 1 1 SnoaL-like polyketide cyclase SnoaL_4 PF13577.1 gi|345005040|ref|YP_004807893.1| - 2.3e-07 30.7 0.1 2.9e-07 30.4 0.1 1.2 1 1 0 1 1 1 1 SnoaL-like domain NTF2 PF02136.15 gi|345005040|ref|YP_004807893.1| - 1.4e-06 28.6 0.0 1.6e-06 28.4 0.0 1.2 1 0 0 1 1 1 1 Nuclear transport factor 2 (NTF2) domain DUF4440 PF14534.1 gi|345005040|ref|YP_004807893.1| - 0.01 16.0 0.2 0.013 15.7 0.1 1.2 1 1 0 1 1 1 0 Domain of unknown function (DUF4440) Aldo_ket_red PF00248.16 gi|345005041|ref|YP_004807894.1| - 1.9e-35 122.0 0.0 2.3e-35 121.7 0.0 1.1 1 0 0 1 1 1 1 Aldo/keto reductase family OrfB_Zn_ribbon PF07282.6 gi|345005042|ref|YP_004807895.1| - 2.7e-21 74.9 0.3 5.7e-21 73.9 0.2 1.6 1 0 0 1 1 1 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.14 gi|345005042|ref|YP_004807895.1| - 7.4e-06 25.5 0.1 1.5e-05 24.5 0.0 1.4 1 0 0 1 1 1 1 Probable transposase IF-2B PF01008.12 gi|345005044|ref|YP_004807897.1| - 6.4e-47 159.8 0.1 7.3e-47 159.6 0.1 1.0 1 0 0 1 1 1 1 Initiation factor 2 subunit family THDPS_N_2 PF14805.1 gi|345005044|ref|YP_004807897.1| - 0.025 14.4 0.4 0.085 12.7 0.2 2.0 1 1 0 1 1 1 0 Tetrahydrodipicolinate N-succinyltransferase N-terminal DeoRC PF00455.17 gi|345005044|ref|YP_004807897.1| - 0.067 12.8 0.9 0.49 10.0 0.0 2.7 4 0 0 4 4 4 0 DeoR C terminal sensor domain zf-NADH-PPase PF09297.6 gi|345005045|ref|YP_004807898.1| - 0.021 14.3 2.1 0.021 14.2 0.1 2.0 3 0 0 3 3 3 0 NADH pyrophosphatase zinc ribbon domain zf-Mss51 PF13824.1 gi|345005045|ref|YP_004807898.1| - 0.034 14.0 0.0 1.7 8.5 0.0 2.1 2 0 0 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 zf-ribbon_3 PF13248.1 gi|345005045|ref|YP_004807898.1| - 0.059 12.5 1.2 0.14 11.3 0.0 2.2 2 0 0 2 2 2 0 zinc-ribbon domain RtcB PF01139.12 gi|345005046|ref|YP_004807899.1| - 6.8e-147 489.8 0.0 7.7e-147 489.6 0.0 1.0 1 0 0 1 1 1 1 tRNA-splicing ligase RtcB DoxX PF07681.7 gi|345005047|ref|YP_004807900.1| - 4.1e-09 36.7 5.8 4.1e-09 36.7 4.0 3.3 3 1 0 3 3 3 2 DoxX DoxD PF04173.8 gi|345005047|ref|YP_004807900.1| - 0.02 14.6 13.2 0.7 9.5 0.7 3.7 2 1 1 3 3 3 0 TQO small subunit DoxD Pyr_redox_2 PF07992.9 gi|345005049|ref|YP_004807902.1| - 1.5e-30 106.5 0.2 1.9e-30 106.2 0.1 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|345005049|ref|YP_004807902.1| - 1.1e-10 41.8 0.8 2e-05 24.8 0.0 3.4 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|345005049|ref|YP_004807902.1| - 5.9e-06 26.4 1.3 0.01 15.9 0.5 3.9 2 1 2 4 4 4 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|345005049|ref|YP_004807902.1| - 7.6e-05 21.7 1.4 1.1 8.1 0.0 3.4 4 0 0 4 4 4 2 FAD dependent oxidoreductase NAD_binding_9 PF13454.1 gi|345005049|ref|YP_004807902.1| - 0.0016 18.2 4.5 0.46 10.2 0.0 3.2 4 0 0 4 4 4 2 FAD-NAD(P)-binding Reductase_C PF14759.1 gi|345005049|ref|YP_004807902.1| - 0.0024 18.1 0.0 0.0073 16.5 0.0 1.8 2 0 0 2 2 2 1 Reductase C-terminal Trp_halogenase PF04820.9 gi|345005049|ref|YP_004807902.1| - 0.0026 16.4 0.1 0.96 7.9 0.0 2.3 2 0 0 2 2 2 2 Tryptophan halogenase HI0933_like PF03486.9 gi|345005049|ref|YP_004807902.1| - 0.0026 16.2 0.0 0.32 9.4 0.0 2.9 3 0 0 3 3 3 1 HI0933-like protein NAD_binding_8 PF13450.1 gi|345005049|ref|YP_004807902.1| - 0.0045 16.9 0.8 0.26 11.3 0.0 3.2 3 0 0 3 3 3 1 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.19 gi|345005049|ref|YP_004807902.1| - 0.025 13.4 0.2 4.3 6.0 0.0 3.1 3 0 0 3 3 3 0 FAD binding domain DUF620 PF04788.7 gi|345005049|ref|YP_004807902.1| - 0.08 12.0 0.0 0.13 11.4 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF620) Lycopene_cycl PF05834.7 gi|345005049|ref|YP_004807902.1| - 0.22 10.3 0.8 0.63 8.8 0.0 2.0 3 0 0 3 3 3 0 Lycopene cyclase protein Amino_oxidase PF01593.19 gi|345005051|ref|YP_004807904.1| - 1.3e-19 70.6 0.4 3e-18 66.1 0.3 2.1 1 1 0 1 1 1 1 Flavin containing amine oxidoreductase NAD_binding_8 PF13450.1 gi|345005051|ref|YP_004807904.1| - 1.8e-14 53.4 0.5 2.7e-13 49.7 0.2 2.6 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain DAO PF01266.19 gi|345005051|ref|YP_004807904.1| - 4.3e-10 39.0 1.1 4.3e-05 22.5 0.1 2.2 2 0 0 2 2 2 2 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|345005051|ref|YP_004807904.1| - 8.7e-08 31.4 0.8 7.5e-05 21.7 0.2 2.2 2 0 0 2 2 2 2 FAD binding domain FAD_oxidored PF12831.2 gi|345005051|ref|YP_004807904.1| - 0.00056 19.0 0.1 0.0017 17.4 0.1 1.7 2 0 0 2 2 2 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.9 gi|345005051|ref|YP_004807904.1| - 0.00059 19.7 0.2 0.0012 18.7 0.1 1.5 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.17 gi|345005051|ref|YP_004807904.1| - 0.0029 16.5 0.1 0.0029 16.5 0.1 1.5 2 0 0 2 2 2 1 Glucose inhibited division protein A HI0933_like PF03486.9 gi|345005051|ref|YP_004807904.1| - 0.0068 14.9 0.8 0.017 13.5 0.3 1.7 2 0 0 2 2 2 1 HI0933-like protein Pyr_redox_3 PF13738.1 gi|345005051|ref|YP_004807904.1| - 0.0081 16.2 0.1 0.029 14.4 0.1 1.8 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.12 gi|345005051|ref|YP_004807904.1| - 0.014 14.5 1.2 0.064 12.3 0.4 2.1 2 0 0 2 2 2 0 Thi4 family NAD_binding_9 PF13454.1 gi|345005051|ref|YP_004807904.1| - 0.024 14.4 0.1 0.55 9.9 0.1 2.2 2 0 0 2 2 2 0 FAD-NAD(P)-binding Pyr_redox PF00070.22 gi|345005051|ref|YP_004807904.1| - 0.13 12.7 0.4 0.13 12.7 0.3 1.9 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase CPSase_L_D2 PF02786.12 gi|345005053|ref|YP_004807906.1| - 2.2e-93 311.3 0.0 1.1e-56 191.5 0.0 2.6 2 1 0 2 2 2 2 Carbamoyl-phosphate synthase L chain, ATP binding domain CPSase_L_chain PF00289.17 gi|345005053|ref|YP_004807906.1| - 6.6e-44 148.5 0.3 3.1e-21 75.5 0.1 2.7 2 0 0 2 2 2 2 Carbamoyl-phosphate synthase L chain, N-terminal domain ATP-grasp_4 PF13535.1 gi|345005053|ref|YP_004807906.1| - 8e-32 110.4 0.0 1.1e-17 64.4 0.0 2.8 2 0 0 2 2 2 2 ATP-grasp domain CPSase_L_D3 PF02787.14 gi|345005053|ref|YP_004807906.1| - 1.3e-20 73.4 0.1 1.1e-10 41.3 0.0 2.4 2 0 0 2 2 2 2 Carbamoyl-phosphate synthetase large chain, oligomerisation domain ATPgrasp_Ter PF15632.1 gi|345005053|ref|YP_004807906.1| - 4.5e-19 68.3 0.0 7.2e-11 41.4 0.0 3.9 3 1 0 3 3 3 2 ATP-grasp in the biosynthetic pathway with Ter operon ATP-grasp PF02222.17 gi|345005053|ref|YP_004807906.1| - 9.5e-11 41.3 0.0 5.4e-07 29.1 0.0 2.4 2 0 0 2 2 2 2 ATP-grasp domain ATP-grasp_3 PF02655.9 gi|345005053|ref|YP_004807906.1| - 1.5e-10 41.1 0.0 2.1e-05 24.4 0.0 2.4 2 0 0 2 2 2 2 ATP-grasp domain Dala_Dala_lig_C PF07478.8 gi|345005053|ref|YP_004807906.1| - 3.1e-08 33.2 0.0 2.6e-06 26.9 0.0 2.5 2 1 0 2 2 2 1 D-ala D-ala ligase C-terminus NAD_kinase PF01513.16 gi|345005055|ref|YP_004807908.1| - 2e-38 131.8 0.0 2.8e-38 131.3 0.0 1.2 1 0 0 1 1 1 1 ATP-NAD kinase DAGK_cat PF00781.19 gi|345005055|ref|YP_004807908.1| - 0.02 14.3 0.0 0.04 13.3 0.0 1.5 1 0 0 1 1 1 0 Diacylglycerol kinase catalytic domain KaiC PF06745.8 gi|345005056|ref|YP_004807909.1| - 9.3e-55 185.2 0.0 1.1e-54 184.9 0.0 1.1 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.1 gi|345005056|ref|YP_004807909.1| - 5.2e-09 35.7 0.9 1e-08 34.8 0.0 1.8 2 0 0 2 2 2 1 AAA domain DnaB_C PF03796.10 gi|345005056|ref|YP_004807909.1| - 2.6e-05 23.2 0.3 0.0043 15.9 0.0 2.1 2 0 0 2 2 2 2 DnaB-like helicase C terminal domain RecA PF00154.16 gi|345005056|ref|YP_004807909.1| - 7.9e-05 21.8 0.1 0.00016 20.8 0.0 1.4 1 0 0 1 1 1 1 recA bacterial DNA recombination protein GvpD PF07088.6 gi|345005056|ref|YP_004807909.1| - 8e-05 21.1 0.3 0.00018 19.9 0.2 1.5 1 1 0 1 1 1 1 GvpD gas vesicle protein AAA_24 PF13479.1 gi|345005056|ref|YP_004807909.1| - 0.00029 20.4 0.0 0.00064 19.3 0.0 1.5 1 0 0 1 1 1 1 AAA domain IstB_IS21 PF01695.12 gi|345005056|ref|YP_004807909.1| - 0.0045 16.4 0.0 0.0088 15.4 0.0 1.4 1 1 0 1 1 1 1 IstB-like ATP binding protein AAA_14 PF13173.1 gi|345005056|ref|YP_004807909.1| - 0.01 15.7 0.0 0.017 15.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain DUF2075 PF09848.4 gi|345005056|ref|YP_004807909.1| - 0.029 13.3 0.0 0.045 12.7 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) TrwB_AAD_bind PF10412.4 gi|345005056|ref|YP_004807909.1| - 0.037 12.6 0.1 0.061 11.9 0.1 1.2 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain T2SE PF00437.15 gi|345005056|ref|YP_004807909.1| - 0.04 12.8 0.1 0.06 12.2 0.0 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_30 PF13604.1 gi|345005056|ref|YP_004807909.1| - 0.051 13.1 0.0 0.087 12.3 0.0 1.4 1 0 0 1 1 1 0 AAA domain PhoH PF02562.11 gi|345005056|ref|YP_004807909.1| - 0.056 12.6 0.0 0.092 11.9 0.0 1.2 1 0 0 1 1 1 0 PhoH-like protein AAA_22 PF13401.1 gi|345005056|ref|YP_004807909.1| - 0.059 13.5 0.1 0.13 12.3 0.0 1.6 1 1 0 1 1 1 0 AAA domain Arch_ATPase PF01637.13 gi|345005056|ref|YP_004807909.1| - 0.081 12.6 0.0 0.13 11.9 0.0 1.3 1 0 0 1 1 1 0 Archaeal ATPase Rad51 PF08423.6 gi|345005056|ref|YP_004807909.1| - 0.1 11.4 0.0 0.2 10.5 0.0 1.4 1 0 0 1 1 1 0 Rad51 PPV_E1_C PF00519.12 gi|345005056|ref|YP_004807909.1| - 0.12 11.0 0.0 0.17 10.4 0.0 1.1 1 0 0 1 1 1 0 Papillomavirus helicase DUF2391 PF09622.5 gi|345005057|ref|YP_004807910.1| - 0.0016 17.6 2.5 0.0029 16.8 1.8 1.3 1 1 0 1 1 1 1 Putative integral membrane protein (DUF2391) DUF4010 PF13194.1 gi|345005057|ref|YP_004807910.1| - 0.024 13.9 3.1 0.044 13.0 2.2 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4010) DUF4345 PF14248.1 gi|345005057|ref|YP_004807910.1| - 0.032 13.6 2.3 0.056 12.9 1.6 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4345) DUF3995 PF13160.1 gi|345005057|ref|YP_004807910.1| - 1.2 9.1 6.3 0.71 9.9 0.6 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF3995) Acetyltransf_7 PF13508.1 gi|345005058|ref|YP_004807911.1| - 1.2e-12 47.8 0.1 2.1e-12 46.9 0.0 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|345005058|ref|YP_004807911.1| - 4.4e-11 42.3 0.0 1.6e-10 40.6 0.0 1.8 2 0 0 2 2 2 1 FR47-like protein Acetyltransf_1 PF00583.19 gi|345005058|ref|YP_004807911.1| - 5.7e-11 42.2 0.1 1.1e-10 41.3 0.1 1.6 1 1 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|345005058|ref|YP_004807911.1| - 5.9e-10 39.2 0.3 7.9e-10 38.8 0.2 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|345005058|ref|YP_004807911.1| - 0.00024 21.0 0.1 0.00029 20.7 0.1 1.3 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_6 PF13480.1 gi|345005058|ref|YP_004807911.1| - 0.0066 16.4 1.8 0.0066 16.4 1.3 1.5 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|345005058|ref|YP_004807911.1| - 0.028 14.3 0.0 0.045 13.7 0.0 1.4 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|345005058|ref|YP_004807911.1| - 0.05 13.4 0.1 0.18 11.6 0.0 1.9 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|345005058|ref|YP_004807911.1| - 0.058 13.2 0.0 0.097 12.5 0.0 1.4 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase Cys_Met_Meta_PP PF01053.15 gi|345005059|ref|YP_004807912.1| - 2.7e-153 509.8 0.0 3e-153 509.6 0.0 1.0 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_1_2 PF00155.16 gi|345005059|ref|YP_004807912.1| - 4.4e-05 22.6 0.0 6.2e-05 22.1 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.14 gi|345005059|ref|YP_004807912.1| - 0.0003 19.6 0.0 0.0006 18.6 0.0 1.4 1 0 0 1 1 1 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.12 gi|345005059|ref|YP_004807912.1| - 0.00096 18.2 0.1 0.0029 16.6 0.0 1.7 1 1 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Met_gamma_lyase PF06838.6 gi|345005059|ref|YP_004807912.1| - 0.0026 16.1 0.0 0.0033 15.7 0.0 1.2 1 0 0 1 1 1 1 Methionine gamma-lyase Ribosomal_L21e PF01157.13 gi|345005060|ref|YP_004807913.1| - 4.5e-31 106.5 0.1 5e-31 106.4 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein L21e RNA_pol_Rpb4 PF03874.11 gi|345005061|ref|YP_004807914.1| - 6.3e-15 55.2 0.7 7.2e-15 55.0 0.5 1.0 1 0 0 1 1 1 1 RNA polymerase Rpb4 DUF655 PF04919.7 gi|345005062|ref|YP_004807915.1| - 4.6e-57 192.6 0.1 5.3e-57 192.4 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF655) HHH_3 PF12836.2 gi|345005062|ref|YP_004807915.1| - 1.7e-05 24.6 0.0 3.4e-05 23.7 0.0 1.5 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_6 PF14579.1 gi|345005062|ref|YP_004807915.1| - 0.1 12.6 0.0 0.22 11.5 0.0 1.6 1 1 0 1 1 1 0 Helix-hairpin-helix motif RrnaAD PF00398.15 gi|345005063|ref|YP_004807916.1| - 1.6e-49 168.2 0.0 1.9e-49 168.0 0.0 1.0 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_26 PF13659.1 gi|345005063|ref|YP_004807916.1| - 4.2e-09 36.4 0.0 7.7e-09 35.6 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|345005063|ref|YP_004807916.1| - 0.00012 22.6 0.1 0.00036 21.0 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|345005063|ref|YP_004807916.1| - 0.00093 19.6 0.0 0.0027 18.1 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain TrkA_N PF02254.13 gi|345005063|ref|YP_004807916.1| - 0.046 13.7 0.0 0.1 12.5 0.0 1.6 1 0 0 1 1 1 0 TrkA-N domain Methyltransf_23 PF13489.1 gi|345005063|ref|YP_004807916.1| - 0.061 13.0 0.0 0.081 12.6 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain MTS PF05175.9 gi|345005063|ref|YP_004807916.1| - 0.076 12.3 0.0 0.12 11.7 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase small domain Methyltransf_25 PF13649.1 gi|345005063|ref|YP_004807916.1| - 0.077 13.3 0.0 0.15 12.4 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain MS_channel PF00924.13 gi|345005064|ref|YP_004807917.1| - 8.2e-46 155.9 0.1 8.2e-46 155.9 0.0 1.8 2 0 0 2 2 2 1 Mechanosensitive ion channel Cation_efflux PF01545.16 gi|345005064|ref|YP_004807917.1| - 0.2 10.7 6.9 0.33 9.9 4.8 1.4 1 0 0 1 1 1 0 Cation efflux family E1-E2_ATPase PF00122.15 gi|345005064|ref|YP_004807917.1| - 4.2 6.3 8.2 1.8 7.5 0.0 2.8 2 1 1 3 3 3 0 E1-E2 ATPase Methyltransf_26 PF13659.1 gi|345005065|ref|YP_004807918.1| - 1.2e-14 54.3 0.0 1.8e-14 53.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|345005065|ref|YP_004807918.1| - 2.5e-10 39.9 0.0 3.7e-10 39.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_11 PF08241.7 gi|345005065|ref|YP_004807918.1| - 3.6e-05 24.1 0.0 0.00034 21.0 0.0 2.1 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|345005065|ref|YP_004807918.1| - 0.00011 21.9 0.0 0.00017 21.3 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|345005065|ref|YP_004807918.1| - 0.00016 22.2 0.0 0.00022 21.7 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain UPF0146 PF03686.8 gi|345005065|ref|YP_004807918.1| - 0.0051 16.6 0.0 0.0079 16.0 0.0 1.2 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0146) Methyltransf_31 PF13847.1 gi|345005065|ref|YP_004807918.1| - 0.0062 16.1 0.0 0.01 15.4 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain PrmA PF06325.8 gi|345005065|ref|YP_004807918.1| - 0.0068 15.5 0.1 0.015 14.4 0.0 1.5 2 0 0 2 2 2 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_2 PF00891.13 gi|345005065|ref|YP_004807918.1| - 0.01 15.0 0.0 0.3 10.2 0.0 2.0 2 0 0 2 2 2 0 O-methyltransferase Methyltransf_25 PF13649.1 gi|345005065|ref|YP_004807918.1| - 0.031 14.6 0.0 0.043 14.1 0.0 1.5 1 1 0 1 1 1 0 Methyltransferase domain DUF768 PF05589.6 gi|345005065|ref|YP_004807918.1| - 0.037 13.9 0.0 0.079 12.9 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF768) Methyltransf_12 PF08242.7 gi|345005065|ref|YP_004807918.1| - 0.084 13.3 0.0 0.24 11.9 0.0 1.7 2 0 0 2 2 2 0 Methyltransferase domain RrnaAD PF00398.15 gi|345005065|ref|YP_004807918.1| - 0.12 11.4 0.0 0.16 10.9 0.0 1.1 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase TrkA_N PF02254.13 gi|345005065|ref|YP_004807918.1| - 0.12 12.3 0.0 0.22 11.5 0.0 1.4 1 0 0 1 1 1 0 TrkA-N domain DUF938 PF06080.7 gi|345005065|ref|YP_004807918.1| - 0.15 11.5 0.0 0.27 10.7 0.0 1.4 2 0 0 2 2 2 0 Protein of unknown function (DUF938) DUF309 PF03745.9 gi|345005066|ref|YP_004807919.1| - 6.1e-12 44.8 0.1 9e-12 44.2 0.1 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF309) Acetyltransf_10 PF13673.1 gi|345005067|ref|YP_004807920.1| - 0.0023 18.0 0.1 0.0067 16.5 0.0 1.8 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|345005067|ref|YP_004807920.1| - 0.007 16.3 0.3 0.067 13.2 0.2 2.3 2 0 0 2 2 2 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|345005067|ref|YP_004807920.1| - 0.0079 16.3 0.0 0.085 13.0 0.0 2.2 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|345005067|ref|YP_004807920.1| - 0.019 14.7 0.2 0.057 13.2 0.1 2.0 3 0 0 3 3 3 0 Acetyltransferase (GNAT) domain Peptidase_M42 PF05343.9 gi|345005068|ref|YP_004807921.1| - 3.5e-80 268.8 0.7 4.4e-80 268.5 0.5 1.0 1 0 0 1 1 1 1 M42 glutamyl aminopeptidase Peptidase_M20 PF01546.23 gi|345005068|ref|YP_004807921.1| - 2.3e-11 43.5 0.2 4.2e-11 42.6 0.2 1.4 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 Peptidase_M28 PF04389.12 gi|345005068|ref|YP_004807921.1| - 0.038 13.7 0.1 0.23 11.1 0.0 2.1 2 0 0 2 2 2 0 Peptidase family M28 AstE_AspA PF04952.9 gi|345005069|ref|YP_004807922.1| - 2.7e-18 65.8 0.0 3.4e-18 65.5 0.0 1.3 1 0 0 1 1 1 1 Succinylglutamate desuccinylase / Aspartoacylase family SIP PF04954.8 gi|345005069|ref|YP_004807922.1| - 0.13 12.6 0.2 4.1 7.7 0.0 2.3 2 0 0 2 2 2 0 Siderophore-interacting protein LSM PF01423.17 gi|345005070|ref|YP_004807923.1| - 3.2e-15 55.4 0.0 4.1e-15 55.0 0.0 1.1 1 0 0 1 1 1 1 LSM domain SM-ATX PF14438.1 gi|345005070|ref|YP_004807923.1| - 5.8e-08 32.5 0.0 6.8e-08 32.3 0.0 1.1 1 0 0 1 1 1 1 Ataxin 2 SM domain Ribosomal_L37e PF01907.14 gi|345005071|ref|YP_004807924.1| - 1.6e-24 85.4 15.2 1.7e-24 85.3 10.6 1.0 1 0 0 1 1 1 1 Ribosomal protein L37e DZR PF12773.2 gi|345005071|ref|YP_004807924.1| - 0.0051 16.6 4.1 0.0062 16.3 2.9 1.2 1 0 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|345005071|ref|YP_004807924.1| - 0.027 13.6 3.3 1.8 7.8 0.2 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-RanBP PF00641.13 gi|345005071|ref|YP_004807924.1| - 0.12 11.5 4.5 0.94 8.6 0.3 2.3 2 0 0 2 2 2 0 Zn-finger in Ran binding protein and others HypA PF01155.14 gi|345005071|ref|YP_004807924.1| - 0.16 11.6 2.6 0.19 11.4 1.8 1.1 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family DUF1258 PF06869.7 gi|345005071|ref|YP_004807924.1| - 0.37 9.8 2.8 0.41 9.6 1.9 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1258) zf-C3HC4 PF00097.20 gi|345005071|ref|YP_004807924.1| - 0.53 9.9 4.8 0.69 9.6 3.3 1.2 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) GCC2_GCC3 PF07699.8 gi|345005071|ref|YP_004807924.1| - 0.57 9.7 9.3 1.3 8.6 6.5 1.6 1 1 0 1 1 1 0 GCC2 and GCC3 FdhE PF04216.7 gi|345005071|ref|YP_004807924.1| - 0.68 9.5 3.2 0.7 9.5 2.2 1.0 1 0 0 1 1 1 0 Protein involved in formate dehydrogenase formation RNA_POL_M_15KD PF02150.11 gi|345005071|ref|YP_004807924.1| - 0.86 9.3 6.4 4 7.2 0.6 2.1 1 1 1 2 2 2 0 RNA polymerases M/15 Kd subunit Cas_CXXC_CXXC PF09706.5 gi|345005071|ref|YP_004807924.1| - 0.97 9.6 4.7 1.2 9.3 3.3 1.2 1 0 0 1 1 1 0 CRISPR-associated protein (Cas_CXXC_CXXC) zinc_ribbon_2 PF13240.1 gi|345005071|ref|YP_004807924.1| - 1.3 8.5 7.2 2.9 7.5 0.4 2.1 1 1 1 2 2 2 0 zinc-ribbon domain OrfB_Zn_ribbon PF07282.6 gi|345005071|ref|YP_004807924.1| - 1.5 8.5 9.0 1.8 8.2 5.8 1.5 1 1 1 2 2 2 0 Putative transposase DNA-binding domain zf-C2H2_3 PF13878.1 gi|345005071|ref|YP_004807924.1| - 3.2 7.3 10.2 5.9 6.5 1.3 2.3 1 1 1 2 2 2 0 zinc-finger of acetyl-transferase ESCO YhfH PF14149.1 gi|345005071|ref|YP_004807924.1| - 3.7 7.4 9.6 2.7 7.8 1.2 2.2 1 1 1 2 2 2 0 YhfH-like protein DUF2688 PF10892.3 gi|345005071|ref|YP_004807924.1| - 7.2 6.3 6.8 0.69 9.6 1.0 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF2688) GATase_6 PF13522.1 gi|345005072|ref|YP_004807925.1| - 5.9e-25 87.7 0.2 1.9e-24 86.1 0.0 1.9 2 0 0 2 2 2 1 Glutamine amidotransferase domain GATase_7 PF13537.1 gi|345005072|ref|YP_004807925.1| - 1.2e-22 79.9 0.0 2e-22 79.2 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_2 PF00310.16 gi|345005072|ref|YP_004807925.1| - 4.3e-21 75.0 0.1 1.5e-15 56.8 0.0 3.1 1 1 1 2 2 2 2 Glutamine amidotransferases class-II Pribosyltran PF00156.22 gi|345005072|ref|YP_004807925.1| - 2.3e-10 40.2 0.0 5.5e-10 39.0 0.0 1.6 1 0 0 1 1 1 1 Phosphoribosyl transferase domain GATase_4 PF13230.1 gi|345005072|ref|YP_004807925.1| - 0.00012 20.8 0.0 0.00018 20.2 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferases class-II DUF420 PF04238.7 gi|345005073|ref|YP_004807926.1| - 3.5e-39 133.7 6.7 3.5e-39 133.7 4.7 1.8 2 0 0 2 2 2 1 Protein of unknown function (DUF420) DUF2306 PF10067.4 gi|345005073|ref|YP_004807926.1| - 0.00025 21.1 0.5 0.00025 21.1 0.3 3.0 2 1 1 3 3 3 1 Predicted membrane protein (DUF2306) Amastin PF07344.6 gi|345005073|ref|YP_004807926.1| - 0.0091 15.6 2.0 0.0091 15.6 1.4 1.8 2 1 0 2 2 2 1 Amastin surface glycoprotein Cytochrom_B561 PF03188.11 gi|345005073|ref|YP_004807926.1| - 0.21 11.4 8.6 0.33 10.7 1.9 2.5 2 1 1 3 3 3 0 Eukaryotic cytochrome b561 DUF1240 PF06836.7 gi|345005073|ref|YP_004807926.1| - 0.95 9.7 5.7 0.23 11.6 0.4 2.4 2 1 0 3 3 3 0 Protein of unknown function (DUF1240) DUF4149 PF13664.1 gi|345005073|ref|YP_004807926.1| - 1.1 9.3 13.3 0.11 12.5 1.0 2.8 2 1 0 3 3 3 0 Domain of unknown function (DUF4149) HOK_GEF PF01848.11 gi|345005073|ref|YP_004807926.1| - 2.6 7.4 7.0 15 5.0 1.6 2.6 2 0 0 2 2 2 0 Hok/gef family Ribosomal_60s PF00428.14 gi|345005074|ref|YP_004807927.1| - 3.9e-11 43.1 31.9 1.3e-09 38.3 22.1 2.0 1 1 0 1 1 1 1 60s Acidic ribosomal protein NOA36 PF06524.7 gi|345005074|ref|YP_004807927.1| - 0.16 11.2 9.6 0.18 11.0 6.6 1.1 1 0 0 1 1 1 0 NOA36 protein CDC45 PF02724.9 gi|345005074|ref|YP_004807927.1| - 0.89 7.5 5.0 0.92 7.4 3.5 1.1 1 0 0 1 1 1 0 CDC45-like protein Cwf_Cwc_15 PF04889.7 gi|345005074|ref|YP_004807927.1| - 1.4 8.5 6.7 1.5 8.5 4.6 1.2 1 0 0 1 1 1 0 Cwf15/Cwc15 cell cycle control protein DUF2457 PF10446.4 gi|345005074|ref|YP_004807927.1| - 1.6 7.3 11.5 1.5 7.4 8.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2457) CENP-T PF15511.1 gi|345005074|ref|YP_004807927.1| - 7.2 5.7 9.2 7.8 5.6 6.4 1.0 1 0 0 1 1 1 0 Centromere kinetochore component CENP-T Nop14 PF04147.7 gi|345005074|ref|YP_004807927.1| - 8.4 4.1 14.0 8.5 4.1 9.7 1.0 1 0 0 1 1 1 0 Nop14-like family SDA1 PF05285.7 gi|345005074|ref|YP_004807927.1| - 9.4 5.4 9.4 8.7 5.5 6.5 1.2 1 0 0 1 1 1 0 SDA1 Ribosomal_L10 PF00466.15 gi|345005075|ref|YP_004807928.1| - 1.9e-20 72.6 0.0 3.3e-20 71.8 0.0 1.4 1 0 0 1 1 1 1 Ribosomal protein L10 CENP-T PF15511.1 gi|345005075|ref|YP_004807928.1| - 0.053 12.7 6.9 0.24 10.6 3.7 2.0 2 0 0 2 2 2 0 Centromere kinetochore component CENP-T Sigma70_ner PF04546.8 gi|345005075|ref|YP_004807928.1| - 1.6 8.3 9.3 96 2.4 9.1 2.0 2 0 0 2 2 2 0 Sigma-70, non-essential region Cwf_Cwc_15 PF04889.7 gi|345005075|ref|YP_004807928.1| - 1.8 8.1 8.5 3 7.4 5.9 1.3 1 0 0 1 1 1 0 Cwf15/Cwc15 cell cycle control protein Ribosomal_L1 PF00687.16 gi|345005076|ref|YP_004807929.1| - 3.8e-45 153.9 0.0 4.4e-45 153.7 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L1p/L10e family DNA_primase_S PF01896.14 gi|345005077|ref|YP_004807930.1| - 2.7e-21 75.8 0.0 3.8e-21 75.4 0.0 1.2 1 0 0 1 1 1 1 Eukaryotic and archaeal DNA primase small subunit AraC_binding_2 PF14525.1 gi|345005077|ref|YP_004807930.1| - 0.016 14.7 2.0 0.19 11.2 0.5 2.6 2 0 0 2 2 2 0 AraC-binding-like domain MDMPI_C PF07398.6 gi|345005077|ref|YP_004807930.1| - 8.6 7.0 14.2 11 6.6 2.4 4.2 3 1 1 4 4 4 0 MDMPI C-terminal domain AhpC-TSA PF00578.16 gi|345005079|ref|YP_004807932.1| - 7.7e-36 122.5 0.0 8.9e-36 122.3 0.0 1.0 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.5 gi|345005079|ref|YP_004807932.1| - 8e-26 90.3 0.0 1e-25 89.9 0.0 1.0 1 0 0 1 1 1 1 Redoxin AhpC-TSA_2 PF13911.1 gi|345005079|ref|YP_004807932.1| - 0.00034 20.5 0.0 0.0029 17.5 0.0 2.0 2 0 0 2 2 2 1 AhpC/TSA antioxidant enzyme DUF899 PF05988.7 gi|345005079|ref|YP_004807932.1| - 0.00079 18.9 0.0 0.00093 18.6 0.0 1.1 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF899) EamA PF00892.15 gi|345005080|ref|YP_004807933.1| - 1.3e-28 99.5 30.8 1.1e-14 54.5 5.5 2.5 2 1 1 3 3 3 2 EamA-like transporter family EmrE PF13536.1 gi|345005080|ref|YP_004807933.1| - 0.014 15.6 9.1 0.014 15.6 6.3 3.8 1 1 3 4 4 4 0 Multidrug resistance efflux transporter UPF0546 PF10639.4 gi|345005080|ref|YP_004807933.1| - 0.13 12.0 2.5 3.6 7.4 0.1 2.5 2 0 0 2 2 2 0 Uncharacterised protein family UPF0546 TPT PF03151.11 gi|345005080|ref|YP_004807933.1| - 1.2 8.8 13.8 0.26 10.9 1.5 2.7 2 2 0 2 2 2 0 Triose-phosphate Transporter family polyprenyl_synt PF00348.12 gi|345005082|ref|YP_004807935.1| - 8.1e-56 188.7 0.2 1.1e-55 188.3 0.1 1.1 1 0 0 1 1 1 1 Polyprenyl synthetase Lactamase_B PF00753.22 gi|345005083|ref|YP_004807936.1| - 1.7e-12 47.4 1.0 4.4e-12 46.0 0.6 1.9 2 0 0 2 2 2 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|345005083|ref|YP_004807936.1| - 3e-08 33.4 1.1 1.3e-06 28.0 0.1 2.2 2 0 0 2 2 2 2 Beta-lactamase superfamily domain RMMBL PF07521.7 gi|345005083|ref|YP_004807936.1| - 5.5e-05 22.9 0.7 0.00015 21.5 0.1 2.0 2 0 0 2 2 2 1 RNA-metabolising metallo-beta-lactamase DUF1413 PF07205.6 gi|345005083|ref|YP_004807936.1| - 0.055 13.0 0.3 2.3 7.8 0.0 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF1413) DUF63 PF01889.12 gi|345005084|ref|YP_004807937.1| - 9.6e-44 150.4 6.5 4.1e-43 148.4 5.1 1.6 2 0 0 2 2 2 1 Membrane protein of unknown function DUF63 DUF3353 PF11833.3 gi|345005084|ref|YP_004807937.1| - 0.26 10.7 2.2 0.5 9.7 1.1 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF3353) Tetraspannin PF00335.15 gi|345005084|ref|YP_004807937.1| - 4.5 6.4 8.8 0.78 8.9 3.0 2.0 2 0 0 2 2 2 0 Tetraspanin family RseC_MucC PF04246.7 gi|345005085|ref|YP_004807938.1| - 0.13 11.8 0.9 0.43 10.1 0.0 2.0 1 1 1 2 2 2 0 Positive regulator of sigma(E), RseC/MucC HTH_AsnC-type PF13404.1 gi|345005086|ref|YP_004807939.1| - 2.4e-17 62.2 0.6 4.8e-17 61.2 0.4 1.6 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain AsnC_trans_reg PF01037.16 gi|345005086|ref|YP_004807939.1| - 4.2e-17 61.6 0.1 6.2e-17 61.0 0.0 1.3 1 0 0 1 1 1 1 AsnC family HTH_24 PF13412.1 gi|345005086|ref|YP_004807939.1| - 5.6e-16 57.6 0.0 8.6e-16 57.0 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|345005086|ref|YP_004807939.1| - 8.2e-07 28.6 0.1 5.6e-06 25.9 0.0 2.0 2 0 0 2 2 2 1 MarR family HTH_20 PF12840.2 gi|345005086|ref|YP_004807939.1| - 2.2e-06 27.3 0.3 6.5e-06 25.8 0.0 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain MarR PF01047.17 gi|345005086|ref|YP_004807939.1| - 0.00012 21.7 0.0 0.0002 21.0 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.5 gi|345005086|ref|YP_004807939.1| - 0.00036 20.0 0.0 0.0011 18.5 0.0 1.7 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_11 PF08279.7 gi|345005086|ref|YP_004807939.1| - 0.0074 15.9 0.0 0.012 15.2 0.0 1.3 1 0 0 1 1 1 1 HTH domain Fe_dep_repress PF01325.14 gi|345005086|ref|YP_004807939.1| - 0.012 15.5 0.0 0.02 14.8 0.0 1.3 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_27 PF13463.1 gi|345005086|ref|YP_004807939.1| - 0.035 14.4 0.0 0.1 12.9 0.0 1.8 1 1 0 1 1 1 0 Winged helix DNA-binding domain HTH_Tnp_ISL3 PF13542.1 gi|345005086|ref|YP_004807939.1| - 0.051 12.7 0.1 0.092 11.9 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 TrmB PF01978.14 gi|345005086|ref|YP_004807939.1| - 0.06 13.0 0.0 0.13 12.0 0.0 1.5 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB GYD PF08734.6 gi|345005086|ref|YP_004807939.1| - 0.09 12.5 0.2 0.17 11.6 0.1 1.5 1 0 0 1 1 1 0 GYD domain HTH_5 PF01022.15 gi|345005086|ref|YP_004807939.1| - 0.11 12.1 0.0 0.16 11.6 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_38 PF13936.1 gi|345005086|ref|YP_004807939.1| - 0.11 12.0 0.0 0.32 10.5 0.1 1.7 2 0 0 2 2 2 0 Helix-turn-helix domain Inositol_P PF00459.20 gi|345005087|ref|YP_004807940.1| - 6.7e-49 166.6 6.1 8.4e-49 166.2 4.3 1.0 1 0 0 1 1 1 1 Inositol monophosphatase family Mito_carr PF00153.22 gi|345005087|ref|YP_004807940.1| - 0.074 12.7 0.1 0.12 12.0 0.1 1.3 1 0 0 1 1 1 0 Mitochondrial carrier protein DUF2938 PF11158.3 gi|345005089|ref|YP_004807942.1| - 0.026 13.8 11.3 0.061 12.6 7.8 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF2938) DUF1440 PF07274.7 gi|345005089|ref|YP_004807942.1| - 0.29 11.1 2.5 0.44 10.5 0.4 2.0 1 1 0 2 2 2 0 Protein of unknown function (DUF1440) HATPase_c PF02518.21 gi|345005090|ref|YP_004807943.1| - 1.1e-21 76.6 0.1 1.8e-21 75.9 0.1 1.3 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.20 gi|345005090|ref|YP_004807943.1| - 3.5e-11 42.9 1.7 6.3e-11 42.1 0.5 2.0 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain HATPase_c_3 PF13589.1 gi|345005090|ref|YP_004807943.1| - 0.00035 20.2 0.0 0.00063 19.4 0.0 1.3 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.1 gi|345005090|ref|YP_004807943.1| - 0.0019 17.9 0.0 0.0039 16.9 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain DUF2074 PF09847.4 gi|345005090|ref|YP_004807943.1| - 0.058 12.1 1.6 0.1 11.3 1.1 1.3 1 0 0 1 1 1 0 Predicted permease (DUF2074) ABC_cobalt PF09819.4 gi|345005091|ref|YP_004807944.1| - 0.24 11.3 16.5 0.052 13.4 8.8 2.0 2 1 0 2 2 2 0 ABC-type cobalt transport system, permease component DUF1440 PF07274.7 gi|345005091|ref|YP_004807944.1| - 2 8.4 8.2 0.15 12.0 1.4 2.2 2 1 1 3 3 3 0 Protein of unknown function (DUF1440) CBS PF00571.23 gi|345005092|ref|YP_004807945.1| - 7.4e-42 140.8 10.3 1.1e-12 47.5 0.3 4.4 4 0 0 4 4 4 4 CBS domain Ribosomal_S30AE PF02482.14 gi|345005092|ref|YP_004807945.1| - 0.02 15.3 0.3 0.1 13.0 0.0 2.3 2 0 0 2 2 2 0 Sigma 54 modulation protein / S30EA ribosomal protein Rad51 PF08423.6 gi|345005093|ref|YP_004807946.1| - 9.1e-28 96.8 0.0 1.1e-27 96.5 0.0 1.0 1 0 0 1 1 1 1 Rad51 AAA_25 PF13481.1 gi|345005093|ref|YP_004807946.1| - 1.4e-17 63.7 0.0 1.9e-17 63.2 0.0 1.1 1 0 0 1 1 1 1 AAA domain RecA PF00154.16 gi|345005093|ref|YP_004807946.1| - 6.3e-09 35.3 0.3 9.6e-09 34.7 0.2 1.5 1 1 0 1 1 1 1 recA bacterial DNA recombination protein Zot PF05707.7 gi|345005093|ref|YP_004807946.1| - 7.3e-09 35.3 0.0 9.7e-09 34.9 0.0 1.1 1 0 0 1 1 1 1 Zonular occludens toxin (Zot) KaiC PF06745.8 gi|345005093|ref|YP_004807946.1| - 1.8e-08 33.8 0.0 3.4e-08 32.8 0.0 1.5 1 1 0 1 1 1 1 KaiC AAA_24 PF13479.1 gi|345005093|ref|YP_004807946.1| - 0.0052 16.3 0.0 0.013 15.1 0.0 1.6 2 0 0 2 2 2 1 AAA domain AAA_10 PF12846.2 gi|345005093|ref|YP_004807946.1| - 0.018 14.4 0.1 0.27 10.6 0.1 2.2 1 1 0 1 1 1 0 AAA-like domain AAA_19 PF13245.1 gi|345005093|ref|YP_004807946.1| - 0.02 14.6 0.0 0.045 13.5 0.0 1.6 1 0 0 1 1 1 0 Part of AAA domain DnaB_C PF03796.10 gi|345005093|ref|YP_004807946.1| - 0.03 13.2 0.0 0.11 11.4 0.0 1.9 1 1 1 2 2 2 0 DnaB-like helicase C terminal domain AAA_31 PF13614.1 gi|345005093|ref|YP_004807946.1| - 0.059 13.3 0.0 0.12 12.3 0.0 1.5 1 1 0 1 1 1 0 AAA domain Arch_ATPase PF01637.13 gi|345005093|ref|YP_004807946.1| - 0.12 12.0 0.0 0.16 11.6 0.0 1.2 1 0 0 1 1 1 0 Archaeal ATPase DUF111 PF01969.12 gi|345005094|ref|YP_004807947.1| - 4e-130 434.0 0.8 4.7e-130 433.8 0.6 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF111 Fer2_4 PF13510.1 gi|345005094|ref|YP_004807947.1| - 0.083 12.6 0.1 1.4 8.7 0.0 2.5 2 0 0 2 2 2 0 2Fe-2S iron-sulfur cluster binding domain Zip PF02535.17 gi|345005094|ref|YP_004807947.1| - 0.15 11.0 4.3 0.21 10.5 3.0 1.2 1 0 0 1 1 1 0 ZIP Zinc transporter SelP_N PF04592.9 gi|345005094|ref|YP_004807947.1| - 2.3 7.5 10.1 3.3 7.0 7.0 1.2 1 0 0 1 1 1 0 Selenoprotein P, N terminal region AAA PF00004.24 gi|345005095|ref|YP_004807948.1| - 1.3e-100 332.7 0.0 3.4e-49 166.3 0.0 2.4 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) CDC48_N PF02359.13 gi|345005095|ref|YP_004807948.1| - 1.9e-29 101.4 0.0 1.5e-28 98.5 0.0 2.5 3 0 0 3 3 1 1 Cell division protein 48 (CDC48), N-terminal domain RuvB_N PF05496.7 gi|345005095|ref|YP_004807948.1| - 4.9e-15 55.2 0.0 8.5e-07 28.2 0.0 2.6 2 1 0 2 2 2 2 Holliday junction DNA helicase ruvB N-terminus AAA_16 PF13191.1 gi|345005095|ref|YP_004807948.1| - 6.4e-15 55.6 0.0 2.3e-07 30.9 0.0 3.1 2 1 0 2 2 2 2 AAA ATPase domain CDC48_2 PF02933.12 gi|345005095|ref|YP_004807948.1| - 7.7e-15 54.2 0.0 3.6e-14 52.1 0.0 2.2 2 0 0 2 2 2 1 Cell division protein 48 (CDC48), domain 2 AAA_5 PF07728.9 gi|345005095|ref|YP_004807948.1| - 1.9e-14 53.5 2.4 2e-06 27.5 0.1 4.1 3 2 0 3 3 2 2 AAA domain (dynein-related subfamily) AAA_2 PF07724.9 gi|345005095|ref|YP_004807948.1| - 2.3e-13 50.4 0.0 2.9e-05 24.0 0.0 2.6 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) AAA_17 PF13207.1 gi|345005095|ref|YP_004807948.1| - 9.9e-13 48.9 0.0 0.00012 22.9 0.0 3.3 3 1 0 3 3 2 2 AAA domain AAA_22 PF13401.1 gi|345005095|ref|YP_004807948.1| - 1.1e-12 48.2 0.8 0.00072 19.6 0.0 4.3 2 2 0 2 2 2 2 AAA domain TIP49 PF06068.8 gi|345005095|ref|YP_004807948.1| - 1.2e-11 44.0 0.0 2.9e-05 22.9 0.0 3.0 3 0 0 3 3 3 2 TIP49 C-terminus AAA_33 PF13671.1 gi|345005095|ref|YP_004807948.1| - 7.7e-11 42.0 0.0 5.5e-05 23.0 0.0 2.5 2 0 0 2 2 2 2 AAA domain AAA_14 PF13173.1 gi|345005095|ref|YP_004807948.1| - 2.9e-09 36.9 0.0 0.002 18.0 0.0 2.5 2 0 0 2 2 2 2 AAA domain AAA_19 PF13245.1 gi|345005095|ref|YP_004807948.1| - 3.6e-09 36.2 1.7 0.0012 18.5 0.1 2.9 2 0 0 2 2 2 2 Part of AAA domain Zeta_toxin PF06414.7 gi|345005095|ref|YP_004807948.1| - 1.3e-08 34.2 0.0 0.00099 18.2 0.0 2.6 2 0 0 2 2 2 2 Zeta toxin IstB_IS21 PF01695.12 gi|345005095|ref|YP_004807948.1| - 1.3e-08 34.4 0.1 0.0057 16.0 0.0 2.3 2 0 0 2 2 2 2 IstB-like ATP binding protein AAA_18 PF13238.1 gi|345005095|ref|YP_004807948.1| - 2e-07 31.3 0.0 0.0062 16.8 0.0 2.6 2 0 0 2 2 2 2 AAA domain Sigma54_activat PF00158.21 gi|345005095|ref|YP_004807948.1| - 3e-07 30.0 0.2 0.026 13.9 0.0 3.5 3 1 0 3 3 3 2 Sigma-54 interaction domain RNA_helicase PF00910.17 gi|345005095|ref|YP_004807948.1| - 5.3e-07 29.7 0.0 0.054 13.6 0.0 2.6 2 0 0 2 2 2 2 RNA helicase Mg_chelatase PF01078.16 gi|345005095|ref|YP_004807948.1| - 9.5e-07 28.1 0.1 0.04 13.0 0.0 2.5 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI KaiC PF06745.8 gi|345005095|ref|YP_004807948.1| - 1.6e-06 27.3 0.6 0.094 11.8 0.0 3.5 2 1 1 3 3 3 2 KaiC AAA_28 PF13521.1 gi|345005095|ref|YP_004807948.1| - 1.8e-06 28.0 0.0 0.013 15.5 0.0 2.5 2 0 0 2 2 2 2 AAA domain AAA_3 PF07726.6 gi|345005095|ref|YP_004807948.1| - 2.1e-06 27.3 0.0 0.031 13.8 0.0 2.6 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_25 PF13481.1 gi|345005095|ref|YP_004807948.1| - 3.2e-06 26.6 7.1 0.89 8.9 0.1 4.4 2 2 2 4 4 4 2 AAA domain PhoH PF02562.11 gi|345005095|ref|YP_004807948.1| - 4.3e-06 26.1 0.2 0.16 11.1 0.0 3.3 3 0 0 3 3 3 2 PhoH-like protein Arch_ATPase PF01637.13 gi|345005095|ref|YP_004807948.1| - 4.6e-06 26.4 0.0 0.078 12.6 0.0 3.8 2 2 1 3 3 3 2 Archaeal ATPase NB-ARC PF00931.17 gi|345005095|ref|YP_004807948.1| - 6.3e-06 25.2 0.0 0.033 13.0 0.0 2.2 2 0 0 2 2 2 2 NB-ARC domain DUF815 PF05673.8 gi|345005095|ref|YP_004807948.1| - 8.5e-06 24.8 0.0 0.066 12.1 0.0 2.4 2 0 0 2 2 2 2 Protein of unknown function (DUF815) Sigma54_activ_2 PF14532.1 gi|345005095|ref|YP_004807948.1| - 1.6e-05 24.9 0.0 0.3 11.1 0.0 2.5 2 0 0 2 2 2 2 Sigma-54 interaction domain AAA_24 PF13479.1 gi|345005095|ref|YP_004807948.1| - 1.8e-05 24.4 0.4 0.05 13.1 0.0 2.7 3 0 0 3 3 2 2 AAA domain ABC_tran PF00005.22 gi|345005095|ref|YP_004807948.1| - 2e-05 24.9 0.0 0.32 11.2 0.0 2.7 2 0 0 2 2 2 2 ABC transporter NACHT PF05729.7 gi|345005095|ref|YP_004807948.1| - 2.6e-05 23.9 0.5 0.26 10.9 0.0 3.7 4 0 0 4 4 3 1 NACHT domain AAA_30 PF13604.1 gi|345005095|ref|YP_004807948.1| - 0.00017 21.2 0.1 0.88 9.1 0.0 2.7 2 0 0 2 2 2 2 AAA domain AAA_11 PF13086.1 gi|345005095|ref|YP_004807948.1| - 0.0002 21.0 0.0 0.55 9.7 0.0 2.5 2 1 0 2 2 2 2 AAA domain KAP_NTPase PF07693.9 gi|345005095|ref|YP_004807948.1| - 0.00032 19.8 0.2 1.6 7.6 0.1 3.4 2 2 0 3 3 3 2 KAP family P-loop domain Parvo_NS1 PF01057.12 gi|345005095|ref|YP_004807948.1| - 0.00032 19.6 0.1 0.39 9.5 0.0 2.2 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 DUF2075 PF09848.4 gi|345005095|ref|YP_004807948.1| - 0.00035 19.6 0.2 0.34 9.8 0.0 2.5 2 1 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) SKI PF01202.17 gi|345005095|ref|YP_004807948.1| - 0.00067 19.5 0.0 0.75 9.6 0.0 2.5 2 0 0 2 2 2 1 Shikimate kinase NTPase_1 PF03266.10 gi|345005095|ref|YP_004807948.1| - 0.0011 18.7 1.2 1.7 8.3 0.0 3.7 3 1 1 4 4 3 1 NTPase IPT PF01745.11 gi|345005095|ref|YP_004807948.1| - 0.0012 18.1 0.6 0.35 9.9 0.0 2.7 3 0 0 3 3 3 1 Isopentenyl transferase UPF0079 PF02367.12 gi|345005095|ref|YP_004807948.1| - 0.0021 17.7 0.0 1.6 8.3 0.0 2.4 2 0 0 2 2 2 1 Uncharacterised P-loop hydrolase UPF0079 ResIII PF04851.10 gi|345005095|ref|YP_004807948.1| - 0.0026 17.6 0.0 2.6 7.8 0.0 2.4 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit Bac_DnaA PF00308.13 gi|345005095|ref|YP_004807948.1| - 0.0037 16.9 0.0 1.8 8.1 0.0 2.5 2 0 0 2 2 2 1 Bacterial dnaA protein Vps4_C PF09336.5 gi|345005095|ref|YP_004807948.1| - 0.0066 16.3 0.2 0.075 12.9 0.0 2.5 2 0 0 2 2 2 1 Vps4 C terminal oligomerisation domain T2SE PF00437.15 gi|345005095|ref|YP_004807948.1| - 0.0083 15.0 0.0 2.2 7.1 0.0 2.4 2 0 0 2 2 2 1 Type II/IV secretion system protein Guanylate_kin PF00625.16 gi|345005095|ref|YP_004807948.1| - 0.012 15.0 0.3 24 4.3 0.0 3.7 3 1 1 4 4 3 0 Guanylate kinase AFG1_ATPase PF03969.11 gi|345005095|ref|YP_004807948.1| - 0.018 13.8 0.0 1.7 7.3 0.0 2.3 2 0 0 2 2 2 0 AFG1-like ATPase Viral_helicase1 PF01443.13 gi|345005095|ref|YP_004807948.1| - 0.021 14.3 0.0 1.8 8.0 0.0 2.2 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase ATP-synt_ab PF00006.20 gi|345005095|ref|YP_004807948.1| - 0.023 14.1 0.0 4 6.8 0.0 2.4 2 0 0 2 2 2 0 ATP synthase alpha/beta family, nucleotide-binding domain CPT PF07931.7 gi|345005095|ref|YP_004807948.1| - 0.027 14.1 0.0 3.3 7.2 0.0 2.4 2 0 0 2 2 2 0 Chloramphenicol phosphotransferase-like protein Torsin PF06309.6 gi|345005095|ref|YP_004807948.1| - 0.044 13.6 0.0 3.7 7.4 0.0 2.4 2 0 0 2 2 2 0 Torsin KTI12 PF08433.5 gi|345005095|ref|YP_004807948.1| - 0.063 12.4 0.0 12 4.9 0.0 2.6 2 0 0 2 2 2 0 Chromatin associated protein KTI12 Cytidylate_kin2 PF13189.1 gi|345005095|ref|YP_004807948.1| - 0.082 12.8 0.0 2.6 7.9 0.0 2.3 2 0 0 2 2 2 0 Cytidylate kinase-like family Aldo_ket_red PF00248.16 gi|345005096|ref|YP_004807949.1| - 1.2e-60 204.7 0.0 1.4e-60 204.5 0.0 1.1 1 0 0 1 1 1 1 Aldo/keto reductase family DUF2237 PF09996.4 gi|345005097|ref|YP_004807950.1| - 1.8e-47 159.6 0.2 2.7e-47 159.0 0.1 1.3 1 1 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2237) PhoU PF01895.14 gi|345005098|ref|YP_004807951.1| - 6.9e-31 106.5 9.0 5e-17 62.1 0.1 2.1 2 0 0 2 2 2 2 PhoU domain Lectin_N PF03954.9 gi|345005098|ref|YP_004807951.1| - 0.033 13.5 0.3 0.11 11.8 0.0 1.8 2 0 0 2 2 2 0 Hepatic lectin, N-terminal domain ABC_tran PF00005.22 gi|345005099|ref|YP_004807952.1| - 3.6e-30 105.0 0.0 6.4e-30 104.2 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|345005099|ref|YP_004807952.1| - 4.1e-10 40.0 0.0 1.4e-07 31.8 0.0 2.2 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|345005099|ref|YP_004807952.1| - 3.7e-08 32.8 0.1 1.1e-06 28.0 0.1 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.1 gi|345005099|ref|YP_004807952.1| - 0.00064 18.8 0.0 0.22 10.5 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain DUF258 PF03193.11 gi|345005099|ref|YP_004807952.1| - 0.0011 18.1 0.0 0.002 17.3 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_22 PF13401.1 gi|345005099|ref|YP_004807952.1| - 0.0018 18.4 0.0 0.0063 16.6 0.0 1.9 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|345005099|ref|YP_004807952.1| - 0.0019 17.6 0.0 0.0049 16.3 0.0 1.7 2 0 0 2 2 2 1 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|345005099|ref|YP_004807952.1| - 0.0022 18.0 0.3 0.0085 16.1 0.2 1.9 1 1 0 1 1 1 1 AAA ATPase domain AAA_33 PF13671.1 gi|345005099|ref|YP_004807952.1| - 0.011 15.6 0.1 0.02 14.7 0.1 1.8 1 1 0 1 1 1 0 AAA domain Rad17 PF03215.10 gi|345005099|ref|YP_004807952.1| - 0.011 14.4 0.0 0.016 13.9 0.0 1.1 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein DeoRC PF00455.17 gi|345005099|ref|YP_004807952.1| - 0.023 14.3 0.0 0.037 13.6 0.0 1.3 1 0 0 1 1 1 0 DeoR C terminal sensor domain AAA_10 PF12846.2 gi|345005099|ref|YP_004807952.1| - 0.024 14.1 0.0 0.23 10.8 0.0 2.2 2 1 0 2 2 2 0 AAA-like domain AAA_23 PF13476.1 gi|345005099|ref|YP_004807952.1| - 0.028 14.7 0.0 0.076 13.3 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_25 PF13481.1 gi|345005099|ref|YP_004807952.1| - 0.032 13.6 0.1 0.58 9.5 0.0 2.3 2 1 0 2 2 2 0 AAA domain YflT PF11181.3 gi|345005099|ref|YP_004807952.1| - 0.035 14.2 0.6 0.5 10.5 0.1 2.2 2 0 0 2 2 2 0 Heat induced stress protein YflT Adeno_IVa2 PF02456.10 gi|345005099|ref|YP_004807952.1| - 0.037 12.6 0.0 0.25 9.9 0.0 1.9 2 0 0 2 2 2 0 Adenovirus IVa2 protein AAA_17 PF13207.1 gi|345005099|ref|YP_004807952.1| - 0.048 14.4 1.0 0.27 12.0 0.6 2.3 1 1 0 1 1 1 0 AAA domain AAA_30 PF13604.1 gi|345005099|ref|YP_004807952.1| - 0.051 13.1 0.0 1.2 8.6 0.0 2.2 2 0 0 2 2 2 0 AAA domain ABC_ATPase PF09818.4 gi|345005099|ref|YP_004807952.1| - 0.1 11.1 0.1 2.7 6.4 0.0 2.1 2 0 0 2 2 2 0 Predicted ATPase of the ABC class AAA_13 PF13166.1 gi|345005099|ref|YP_004807952.1| - 0.11 10.9 0.0 2 6.7 0.0 2.1 2 0 0 2 2 2 0 AAA domain Arch_ATPase PF01637.13 gi|345005099|ref|YP_004807952.1| - 0.14 11.8 0.0 0.44 10.1 0.0 2.0 1 1 0 1 1 1 0 Archaeal ATPase BPD_transp_1 PF00528.17 gi|345005100|ref|YP_004807953.1| - 3.5e-22 78.8 16.1 3.5e-22 78.8 11.2 4.9 2 2 1 3 3 3 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.17 gi|345005101|ref|YP_004807954.1| - 8.5e-17 61.2 14.6 8.5e-17 61.2 10.1 2.5 2 2 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component PBP_like_2 PF12849.2 gi|345005102|ref|YP_004807955.1| - 7.5e-27 94.5 4.0 1.1e-26 93.9 2.8 1.3 1 0 0 1 1 1 1 PBP superfamily domain PBP_like PF12727.2 gi|345005102|ref|YP_004807955.1| - 5.3e-23 80.9 0.0 7.8e-23 80.4 0.0 1.3 1 0 0 1 1 1 1 PBP superfamily domain TAT_signal PF10518.4 gi|345005102|ref|YP_004807955.1| - 0.0036 17.1 3.9 0.0097 15.8 2.7 1.7 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence UCR_Fe-S_N PF10399.4 gi|345005102|ref|YP_004807955.1| - 0.078 12.1 2.3 0.2 10.8 1.6 1.7 1 0 0 1 1 1 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal PhoU PF01895.14 gi|345005103|ref|YP_004807956.1| - 3.3e-24 85.1 11.4 6.8e-19 68.1 0.9 2.4 2 0 0 2 2 2 2 PhoU domain Antitoxin-MazE PF04014.13 gi|345005103|ref|YP_004807956.1| - 6.1e-08 32.2 0.2 2e-07 30.5 0.0 1.9 2 0 0 2 2 2 1 Antidote-toxin recognition MazE HemY_N PF07219.8 gi|345005103|ref|YP_004807956.1| - 0.24 10.9 3.5 3.2 7.3 0.1 2.6 2 1 0 2 2 2 0 HemY protein N-terminus Siah-Interact_N PF09032.6 gi|345005103|ref|YP_004807956.1| - 1.1 9.3 4.0 11 6.1 0.2 2.4 2 0 0 2 2 2 0 Siah interacting protein, N terminal HAMP PF00672.20 gi|345005103|ref|YP_004807956.1| - 1.9 8.7 7.4 6.9 6.9 2.0 3.4 2 1 0 2 2 2 0 HAMP domain Pox_A9 PF04835.7 gi|345005104|ref|YP_004807957.1| - 0.15 11.9 0.5 2.8 7.9 0.0 2.1 2 0 0 2 2 2 0 A9 protein conserved region SdpI PF13630.1 gi|345005104|ref|YP_004807957.1| - 0.33 10.6 4.0 0.4 10.4 2.8 1.1 1 0 0 1 1 1 0 SdpI/YhfL protein family PGPGW PF09656.5 gi|345005104|ref|YP_004807957.1| - 1.4 8.2 9.4 0.56 9.5 0.5 2.1 1 1 1 2 2 2 0 Putative transmembrane protein (PGPGW) Ribosomal_S8e PF01201.17 gi|345005105|ref|YP_004807958.1| - 3.5e-32 111.3 4.5 3.8e-32 111.2 3.1 1.0 1 0 0 1 1 1 1 Ribosomal protein S8e GFRP PF06399.8 gi|345005105|ref|YP_004807958.1| - 0.12 11.9 0.0 0.2 11.2 0.0 1.3 1 0 0 1 1 1 0 GTP cyclohydrolase I feedback regulatory protein (GFRP) DUF2240 PF09999.4 gi|345005106|ref|YP_004807959.1| - 5.6e-48 162.0 0.3 6.7e-48 161.7 0.2 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2240) DUF1470 PF07336.6 gi|345005106|ref|YP_004807959.1| - 0.13 12.6 7.8 0.26 11.6 5.4 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF1470) MS_channel PF00924.13 gi|345005108|ref|YP_004807961.1| - 3.1e-32 111.5 0.1 4.3e-32 111.1 0.1 1.2 1 0 0 1 1 1 1 Mechanosensitive ion channel DUF59 PF01883.14 gi|345005108|ref|YP_004807961.1| - 0.17 11.9 0.7 18 5.4 0.2 2.5 2 0 0 2 2 2 0 Domain of unknown function DUF59 Ferrochelatase PF00762.14 gi|345005109|ref|YP_004807962.1| - 9.2e-68 228.5 0.0 1.1e-67 228.2 0.0 1.0 1 0 0 1 1 1 1 Ferrochelatase Glyco_trans_4_4 PF13579.1 gi|345005109|ref|YP_004807962.1| - 0.00015 21.9 0.1 0.062 13.4 0.1 2.3 2 0 0 2 2 2 2 Glycosyl transferase 4-like domain CbiX PF01903.12 gi|345005109|ref|YP_004807962.1| - 0.012 15.7 0.1 1.4 9.0 0.0 2.9 2 1 0 2 2 2 0 CbiX Amino_oxidase PF01593.19 gi|345005110|ref|YP_004807963.1| - 1e-16 61.1 0.0 1.4e-09 37.5 0.0 2.1 2 0 0 2 2 2 2 Flavin containing amine oxidoreductase NAD_binding_8 PF13450.1 gi|345005110|ref|YP_004807963.1| - 2.1e-09 37.2 0.2 4.5e-09 36.2 0.1 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain DAO PF01266.19 gi|345005110|ref|YP_004807963.1| - 1.7e-07 30.4 1.9 0.00018 20.5 0.1 2.4 2 1 0 2 2 2 2 FAD dependent oxidoreductase Pyr_redox_3 PF13738.1 gi|345005110|ref|YP_004807963.1| - 0.00014 21.9 0.2 0.17 11.9 0.1 2.2 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.14 gi|345005110|ref|YP_004807963.1| - 0.0011 18.1 0.1 0.0015 17.6 0.1 1.2 1 0 0 1 1 1 1 FAD binding domain NAD_binding_9 PF13454.1 gi|345005110|ref|YP_004807963.1| - 0.0013 18.4 0.1 0.85 9.3 0.2 2.4 2 1 0 2 2 2 2 FAD-NAD(P)-binding FMO-like PF00743.14 gi|345005110|ref|YP_004807963.1| - 0.0018 16.5 0.1 0.0026 16.0 0.0 1.2 1 0 0 1 1 1 1 Flavin-binding monooxygenase-like FAD_binding_2 PF00890.19 gi|345005110|ref|YP_004807963.1| - 0.018 13.8 0.7 0.032 13.0 0.5 1.4 1 0 0 1 1 1 0 FAD binding domain Pyr_redox_2 PF07992.9 gi|345005110|ref|YP_004807963.1| - 0.03 14.2 0.1 0.15 11.9 0.1 1.9 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|345005110|ref|YP_004807963.1| - 0.043 14.2 0.8 0.3 11.5 0.5 2.3 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.13 gi|345005110|ref|YP_004807963.1| - 0.069 12.8 0.2 0.13 11.9 0.1 1.5 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain URO-D PF01208.12 gi|345005111|ref|YP_004807964.1| - 1.2e-104 349.9 0.0 1.3e-104 349.8 0.0 1.0 1 0 0 1 1 1 1 Uroporphyrinogen decarboxylase (URO-D) Usp PF00582.21 gi|345005112|ref|YP_004807965.1| - 1.6e-36 125.5 3.3 1.8e-36 125.3 2.3 1.0 1 0 0 1 1 1 1 Universal stress protein family Spo0A_C PF08769.6 gi|345005112|ref|YP_004807965.1| - 0.094 12.5 0.0 0.12 12.2 0.0 1.4 1 0 0 1 1 1 0 Sporulation initiation factor Spo0A C terminal Dus PF01207.12 gi|345005112|ref|YP_004807965.1| - 0.097 11.4 0.0 0.14 10.9 0.0 1.2 1 0 0 1 1 1 0 Dihydrouridine synthase (Dus) BPL_LplA_LipB PF03099.14 gi|345005113|ref|YP_004807966.1| - 1.5e-17 63.7 0.0 9.8e-17 61.1 0.0 2.0 1 1 0 1 1 1 1 Biotin/lipoate A/B protein ligase family BPL_C PF02237.12 gi|345005113|ref|YP_004807966.1| - 3.3e-12 45.8 0.3 6.5e-12 44.9 0.2 1.5 1 0 0 1 1 1 1 Biotin protein ligase C terminal domain HTH_11 PF08279.7 gi|345005113|ref|YP_004807966.1| - 5.8e-11 41.8 0.0 1.3e-10 40.6 0.0 1.6 2 0 0 2 2 2 1 HTH domain HTH_24 PF13412.1 gi|345005113|ref|YP_004807966.1| - 2.7e-05 23.4 0.0 4.9e-05 22.6 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.2 gi|345005113|ref|YP_004807966.1| - 4.4e-05 23.2 0.0 9e-05 22.2 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|345005113|ref|YP_004807966.1| - 0.00031 20.3 0.0 0.00078 19.0 0.0 1.7 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.15 gi|345005113|ref|YP_004807966.1| - 0.002 17.7 0.0 0.0034 17.0 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_AsnC-type PF13404.1 gi|345005113|ref|YP_004807966.1| - 0.0063 16.0 2.2 0.015 14.8 0.3 2.7 2 1 0 2 2 2 1 AsnC-type helix-turn-helix domain TrmB PF01978.14 gi|345005113|ref|YP_004807966.1| - 0.021 14.5 0.0 0.037 13.7 0.0 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Fe_dep_repress PF01325.14 gi|345005113|ref|YP_004807966.1| - 0.028 14.3 0.0 0.06 13.3 0.0 1.5 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_1 PF00126.22 gi|345005113|ref|YP_004807966.1| - 0.044 13.5 0.9 0.1 12.3 0.0 2.0 2 0 0 2 2 2 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_23 PF13384.1 gi|345005113|ref|YP_004807966.1| - 0.045 13.4 0.0 0.11 12.1 0.0 1.7 1 0 0 1 1 1 0 Homeodomain-like domain Carboxyl_trans PF01039.17 gi|345005114|ref|YP_004807967.1| - 1e-203 677.2 0.1 1.1e-203 677.0 0.1 1.0 1 0 0 1 1 1 1 Carboxyl transferase domain ACC_epsilon PF13822.1 gi|345005115|ref|YP_004807968.1| - 0.8 10.0 16.8 0.26 11.6 8.0 2.2 1 1 1 2 2 2 0 Acyl-CoA carboxylase epsilon subunit OAD_gamma PF04277.8 gi|345005115|ref|YP_004807968.1| - 1.1 9.6 4.8 0.23 11.8 0.7 1.8 1 1 1 2 2 2 0 Oxaloacetate decarboxylase, gamma chain Rad51 PF08423.6 gi|345005116|ref|YP_004807969.1| - 0.00013 20.9 0.0 0.0002 20.3 0.0 1.2 1 0 0 1 1 1 1 Rad51 Isochorismatase PF00857.15 gi|345005116|ref|YP_004807969.1| - 0.0061 16.5 0.0 0.012 15.5 0.0 1.5 1 0 0 1 1 1 1 Isochorismatase family GvpL_GvpF PF06386.6 gi|345005117|ref|YP_004807970.1| - 0.023 14.3 0.8 0.024 14.2 0.6 1.1 1 0 0 1 1 1 0 Gas vesicle synthesis protein GvpL/GvpF MRP-L28 PF09812.4 gi|345005117|ref|YP_004807970.1| - 0.18 11.6 0.9 0.21 11.4 0.1 1.4 2 0 0 2 2 2 0 Mitochondrial ribosomal protein L28 DNA_pol_B PF00136.16 gi|345005118|ref|YP_004807971.1| - 2.3e-34 119.0 0.0 5.1e-34 117.8 0.0 1.5 1 1 0 1 1 1 1 DNA polymerase family B AAA_22 PF13401.1 gi|345005119|ref|YP_004807972.1| - 3.1e-11 43.5 0.0 3.6e-10 40.1 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|345005119|ref|YP_004807972.1| - 2.1e-09 37.6 4.0 3.3e-07 30.4 2.8 3.1 1 1 0 1 1 1 1 AAA ATPase domain Bac_DnaA PF00308.13 gi|345005119|ref|YP_004807972.1| - 4e-09 36.4 0.1 1.6e-05 24.6 0.1 2.7 2 1 1 3 3 3 2 Bacterial dnaA protein AAA PF00004.24 gi|345005119|ref|YP_004807972.1| - 1.1e-07 32.0 0.0 4.3e-07 30.2 0.0 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|345005119|ref|YP_004807972.1| - 1.8e-05 24.4 0.0 5.4e-05 22.9 0.0 1.8 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_33 PF13671.1 gi|345005119|ref|YP_004807972.1| - 4e-05 23.5 0.8 0.00026 20.8 0.5 2.4 1 1 1 2 2 2 1 AAA domain AAA_17 PF13207.1 gi|345005119|ref|YP_004807972.1| - 4.8e-05 24.1 0.4 0.00078 20.2 0.1 2.7 1 1 0 2 2 2 1 AAA domain DUF815 PF05673.8 gi|345005119|ref|YP_004807972.1| - 0.00059 18.8 0.0 0.0012 17.8 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF815) NACHT PF05729.7 gi|345005119|ref|YP_004807972.1| - 0.00089 18.9 0.0 0.0016 18.1 0.0 1.4 1 0 0 1 1 1 1 NACHT domain Arch_ATPase PF01637.13 gi|345005119|ref|YP_004807972.1| - 0.0012 18.5 0.0 0.0067 16.1 0.0 2.1 1 1 0 1 1 1 1 Archaeal ATPase AAA_18 PF13238.1 gi|345005119|ref|YP_004807972.1| - 0.0012 19.0 0.0 0.0058 16.9 0.0 2.1 2 1 0 2 2 2 1 AAA domain NB-ARC PF00931.17 gi|345005119|ref|YP_004807972.1| - 0.0013 17.6 0.0 0.0021 16.9 0.0 1.3 1 0 0 1 1 1 1 NB-ARC domain RuvB_N PF05496.7 gi|345005119|ref|YP_004807972.1| - 0.0015 17.6 0.3 1.1 8.1 0.0 2.5 3 0 0 3 3 3 2 Holliday junction DNA helicase ruvB N-terminus IstB_IS21 PF01695.12 gi|345005119|ref|YP_004807972.1| - 0.0027 17.1 0.2 0.016 14.6 0.0 2.3 2 0 0 2 2 2 1 IstB-like ATP binding protein Zeta_toxin PF06414.7 gi|345005119|ref|YP_004807972.1| - 0.0054 15.8 0.9 0.087 11.9 0.0 2.7 2 1 1 3 3 3 1 Zeta toxin ABC_tran PF00005.22 gi|345005119|ref|YP_004807972.1| - 0.013 15.8 0.1 0.071 13.4 0.0 2.3 3 1 0 3 3 2 0 ABC transporter AAA_10 PF12846.2 gi|345005119|ref|YP_004807972.1| - 0.014 14.8 0.0 0.068 12.5 0.0 2.0 3 0 0 3 3 3 0 AAA-like domain Sigma54_activat PF00158.21 gi|345005119|ref|YP_004807972.1| - 0.025 14.0 0.0 0.055 12.9 0.0 1.6 1 0 0 1 1 1 0 Sigma-54 interaction domain NTPase_1 PF03266.10 gi|345005119|ref|YP_004807972.1| - 0.026 14.2 0.1 0.23 11.1 0.0 2.4 3 0 0 3 3 2 0 NTPase RNA_helicase PF00910.17 gi|345005119|ref|YP_004807972.1| - 0.033 14.3 0.0 0.18 11.9 0.0 2.2 3 0 0 3 3 3 0 RNA helicase AAA_19 PF13245.1 gi|345005119|ref|YP_004807972.1| - 0.034 13.9 3.1 0.054 13.2 0.1 2.5 2 1 0 2 2 2 0 Part of AAA domain DEAD PF00270.24 gi|345005119|ref|YP_004807972.1| - 0.035 13.5 0.0 8.6 5.8 0.0 2.4 2 0 0 2 2 2 0 DEAD/DEAH box helicase PRK PF00485.13 gi|345005119|ref|YP_004807972.1| - 0.036 13.6 0.0 0.08 12.4 0.0 1.5 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family SKI PF01202.17 gi|345005119|ref|YP_004807972.1| - 0.037 13.8 0.0 0.08 12.8 0.0 1.6 1 0 0 1 1 1 0 Shikimate kinase DUF2075 PF09848.4 gi|345005119|ref|YP_004807972.1| - 0.04 12.8 0.0 0.3 10.0 0.0 2.0 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) Rad17 PF03215.10 gi|345005119|ref|YP_004807972.1| - 0.042 12.5 0.0 1.6 7.3 0.0 2.1 2 0 0 2 2 2 0 Rad17 cell cycle checkpoint protein AAA_29 PF13555.1 gi|345005119|ref|YP_004807972.1| - 0.046 13.2 0.0 0.11 12.1 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_14 PF13173.1 gi|345005119|ref|YP_004807972.1| - 0.085 12.7 0.0 0.17 11.7 0.0 1.5 1 0 0 1 1 1 0 AAA domain DUF258 PF03193.11 gi|345005119|ref|YP_004807972.1| - 0.09 11.9 0.0 0.17 11.0 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_24 PF13479.1 gi|345005119|ref|YP_004807972.1| - 0.091 12.3 0.1 0.23 11.0 0.0 1.7 1 1 0 1 1 1 0 AAA domain Sigma54_activ_2 PF14532.1 gi|345005119|ref|YP_004807972.1| - 0.1 12.6 0.0 0.36 10.8 0.0 1.9 2 0 0 2 2 2 0 Sigma-54 interaction domain Corona_3 PF04694.7 gi|345005120|ref|YP_004807973.1| - 0.0093 15.8 0.2 0.015 15.1 0.0 1.5 1 1 1 2 2 2 1 Coronavirus ORF3 protein DUF543 PF04418.7 gi|345005120|ref|YP_004807973.1| - 0.028 14.3 0.1 0.031 14.2 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF543) DUF1469 PF07332.6 gi|345005120|ref|YP_004807973.1| - 0.17 11.6 4.0 0.2 11.3 2.8 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1469) MOSC PF03473.12 gi|345005121|ref|YP_004807974.1| - 5e-15 55.1 0.1 6.4e-15 54.7 0.1 1.1 1 0 0 1 1 1 1 MOSC domain HD PF01966.17 gi|345005122|ref|YP_004807975.1| - 3.8e-13 49.5 0.8 3.8e-13 49.5 0.6 2.2 2 1 0 2 2 2 1 HD domain PIN PF01850.16 gi|345005123|ref|YP_004807976.1| - 8.4e-11 42.2 1.3 9.7e-11 42.0 0.9 1.0 1 0 0 1 1 1 1 PIN domain DUF217 PF02697.9 gi|345005124|ref|YP_004807977.1| - 1.9e-08 34.4 0.1 2.1e-08 34.2 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized ACR, COG1753 PALP PF00291.20 gi|345005125|ref|YP_004807978.1| - 1.1e-53 182.5 5.9 1.2e-53 182.3 4.1 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme TF_Zn_Ribbon PF08271.7 gi|345005125|ref|YP_004807978.1| - 0.034 13.4 1.5 0.07 12.4 1.0 1.5 1 0 0 1 1 1 0 TFIIB zinc-binding HypA PF01155.14 gi|345005125|ref|YP_004807978.1| - 0.038 13.6 0.2 0.075 12.7 0.2 1.5 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family Prok-RING_1 PF14446.1 gi|345005125|ref|YP_004807978.1| - 0.067 12.9 0.8 0.12 12.0 0.5 1.4 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 DZR PF12773.2 gi|345005125|ref|YP_004807978.1| - 0.095 12.5 0.3 0.18 11.6 0.2 1.4 1 0 0 1 1 1 0 Double zinc ribbon AlaDh_PNT_C PF01262.16 gi|345005125|ref|YP_004807978.1| - 0.11 12.0 0.4 0.21 11.1 0.3 1.4 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain DUF1936 PF09151.5 gi|345005125|ref|YP_004807978.1| - 0.13 11.7 0.1 0.26 10.8 0.1 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF1936) zf-LYAR PF08790.6 gi|345005125|ref|YP_004807978.1| - 0.15 11.8 2.1 0.3 10.8 1.5 1.6 1 0 0 1 1 1 0 LYAR-type C2HC zinc finger Methyltransf_26 PF13659.1 gi|345005126|ref|YP_004807979.1| - 1.3e-10 41.3 0.8 1.3e-10 41.3 0.6 3.0 2 1 0 3 3 3 1 Methyltransferase domain N6_Mtase PF02384.11 gi|345005126|ref|YP_004807979.1| - 0.0039 16.3 0.0 0.0069 15.4 0.0 1.4 1 1 0 1 1 1 1 N-6 DNA Methylase KfrA_N PF11740.3 gi|345005126|ref|YP_004807979.1| - 0.071 13.5 0.3 0.071 13.5 0.2 4.0 3 1 1 4 4 4 0 Plasmid replication region DNA-binding N-term DUF4532 PF15046.1 gi|345005126|ref|YP_004807979.1| - 0.24 10.3 0.0 0.41 9.5 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF4532) TcdB_N PF12918.2 gi|345005126|ref|YP_004807979.1| - 0.31 11.1 0.0 0.6 10.2 0.0 1.4 1 0 0 1 1 1 0 TcdB toxin N-terminal helical domain AAA_3 PF07726.6 gi|345005127|ref|YP_004807980.1| - 1.9e-61 205.4 0.2 2.9e-61 204.8 0.1 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|345005127|ref|YP_004807980.1| - 1.4e-13 50.7 0.0 2.3e-13 50.0 0.0 1.3 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA PF00004.24 gi|345005127|ref|YP_004807980.1| - 5.7e-08 33.0 0.0 1.4e-07 31.7 0.0 1.7 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) MCM PF00493.18 gi|345005127|ref|YP_004807980.1| - 3.2e-07 29.4 0.0 2.3e-06 26.6 0.0 2.0 2 0 0 2 2 2 1 MCM2/3/5 family Mg_chelatase PF01078.16 gi|345005127|ref|YP_004807980.1| - 9.5e-07 28.1 0.2 0.0026 16.9 0.1 2.5 3 0 0 3 3 3 2 Magnesium chelatase, subunit ChlI RuvB_N PF05496.7 gi|345005127|ref|YP_004807980.1| - 1.6e-06 27.3 0.0 1.7e-05 24.0 0.0 2.2 1 1 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus Sigma54_activat PF00158.21 gi|345005127|ref|YP_004807980.1| - 1.7e-06 27.6 0.0 0.0019 17.6 0.0 2.2 2 0 0 2 2 2 2 Sigma-54 interaction domain AAA_22 PF13401.1 gi|345005127|ref|YP_004807980.1| - 0.087 12.9 0.1 0.25 11.4 0.0 1.9 2 1 0 2 2 2 0 AAA domain DUF58 PF01882.13 gi|345005128|ref|YP_004807981.1| - 1.9e-20 72.8 0.2 5.4e-20 71.3 0.1 1.9 1 0 0 1 1 1 1 Protein of unknown function DUF58 Ead_Ea22 PF13935.1 gi|345005128|ref|YP_004807981.1| - 0.042 14.1 0.2 0.08 13.2 0.2 1.4 1 0 0 1 1 1 0 Ead/Ea22-like protein Transglut_core PF01841.14 gi|345005129|ref|YP_004807982.1| - 2.2e-30 105.1 0.2 5e-30 104.0 0.2 1.6 1 0 0 1 1 1 1 Transglutaminase-like superfamily Transglut_core3 PF13471.1 gi|345005129|ref|YP_004807982.1| - 2.6e-06 27.1 0.2 1.2e-05 25.1 0.0 2.1 2 0 0 2 2 2 1 Transglutaminase-like superfamily DUF4129 PF13559.1 gi|345005129|ref|YP_004807982.1| - 5.2e-06 26.3 14.1 5.6e-06 26.2 7.6 2.7 2 0 0 2 2 2 1 Domain of unknown function (DUF4129) DUF4218 PF13960.1 gi|345005129|ref|YP_004807982.1| - 0.23 10.8 0.1 0.59 9.5 0.0 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4218) SUI1 PF01253.17 gi|345005130|ref|YP_004807983.1| - 2.7e-25 87.9 0.0 3.1e-25 87.7 0.0 1.1 1 0 0 1 1 1 1 Translation initiation factor SUI1 Img2 PF05046.9 gi|345005130|ref|YP_004807983.1| - 0.034 14.3 0.0 0.052 13.7 0.0 1.5 1 1 0 1 1 1 0 Mitochondrial large subunit ribosomal protein (Img2) DTW PF03942.10 gi|345005130|ref|YP_004807983.1| - 0.065 12.4 0.5 0.075 12.2 0.4 1.1 1 0 0 1 1 1 0 DTW domain CARDB PF07705.6 gi|345005131|ref|YP_004807984.1| - 7.8e-12 45.1 0.7 3.1e-05 23.9 0.2 3.1 3 0 0 3 3 3 2 CARDB Peptidase_MA_2 PF13485.1 gi|345005131|ref|YP_004807984.1| - 3.1e-05 24.0 0.5 5.6e-05 23.1 0.3 1.4 1 0 0 1 1 1 1 Peptidase MA superfamily DUF4232 PF14016.1 gi|345005131|ref|YP_004807984.1| - 0.00012 21.7 14.4 0.64 9.6 0.2 4.3 1 1 2 3 3 3 3 Protein of unknown function (DUF4232) DUF11 PF01345.13 gi|345005131|ref|YP_004807984.1| - 0.003 17.5 12.8 0.18 11.8 0.1 3.8 3 0 0 3 3 3 2 Domain of unknown function DUF11 DUF824 PF05688.6 gi|345005131|ref|YP_004807984.1| - 0.0043 16.6 1.8 2.2 7.9 0.0 3.5 3 0 0 3 3 3 2 Salmonella repeat of unknown function (DUF824) Transglut_C PF00927.17 gi|345005131|ref|YP_004807984.1| - 0.026 14.5 0.0 0.62 10.1 0.0 2.6 2 1 0 2 2 2 0 Transglutaminase family, C-terminal ig like domain DUF1034 PF06280.7 gi|345005131|ref|YP_004807984.1| - 0.034 14.5 2.3 3.9 7.9 0.5 3.1 2 1 1 3 3 3 0 Fn3-like domain (DUF1034) BsuPI PF12690.2 gi|345005131|ref|YP_004807984.1| - 0.075 12.7 0.0 76 3.1 0.0 3.8 3 0 0 3 3 3 0 Intracellular proteinase inhibitor Zona_pellucida PF00100.18 gi|345005131|ref|YP_004807984.1| - 0.16 11.3 0.2 0.74 9.2 0.0 1.9 1 1 1 2 2 2 0 Zona pellucida-like domain DUF2635 PF10948.3 gi|345005131|ref|YP_004807984.1| - 0.17 11.1 1.5 3 7.2 0.0 2.9 3 0 0 3 3 3 0 Protein of unknown function (DUF2635) Rhodanese PF00581.15 gi|345005132|ref|YP_004807985.1| - 1.1e-17 64.3 0.0 1.3e-17 64.1 0.0 1.1 1 0 0 1 1 1 1 Rhodanese-like domain NUDIX PF00293.23 gi|345005133|ref|YP_004807986.1| - 8.6e-14 51.3 1.1 1.4e-13 50.6 0.8 1.3 1 0 0 1 1 1 1 NUDIX domain Levi_coat PF01819.12 gi|345005134|ref|YP_004807987.1| - 0.13 11.8 0.0 0.19 11.3 0.0 1.2 1 0 0 1 1 1 0 Levivirus coat protein Cwf_Cwc_15 PF04889.7 gi|345005135|ref|YP_004807988.1| - 0.8 9.3 7.9 0.8 9.3 5.5 1.1 1 0 0 1 1 1 0 Cwf15/Cwc15 cell cycle control protein Acetyltransf_1 PF00583.19 gi|345005136|ref|YP_004807989.1| - 1.3e-15 57.1 0.0 1.8e-15 56.7 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|345005136|ref|YP_004807989.1| - 4.5e-13 49.3 0.0 5.9e-13 48.9 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|345005136|ref|YP_004807989.1| - 5.5e-08 32.4 0.0 8.5e-08 31.8 0.0 1.2 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_7 PF13508.1 gi|345005136|ref|YP_004807989.1| - 8.3e-08 32.2 0.0 1.2e-07 31.8 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|345005136|ref|YP_004807989.1| - 1.3e-05 25.0 0.0 1.8e-05 24.5 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|345005136|ref|YP_004807989.1| - 0.00014 21.7 0.0 0.0002 21.2 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|345005136|ref|YP_004807989.1| - 0.0013 18.6 0.0 0.0019 18.1 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|345005136|ref|YP_004807989.1| - 0.034 14.3 0.0 0.037 14.1 0.0 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Aconitase PF00330.15 gi|345005137|ref|YP_004807990.1| - 1.7e-97 326.8 0.5 9e-68 228.8 0.0 2.1 1 1 1 2 2 2 2 Aconitase family (aconitate hydratase) Aconitase_C PF00694.14 gi|345005137|ref|YP_004807990.1| - 5.9e-20 71.7 0.0 1.1e-19 70.7 0.0 1.5 1 0 0 1 1 1 1 Aconitase C-terminal domain DUF521 PF04412.8 gi|345005137|ref|YP_004807990.1| - 0.046 12.2 0.0 0.07 11.6 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF521) dUTPase PF00692.14 gi|345005138|ref|YP_004807991.1| - 1.6e-07 30.8 0.0 2e-07 30.5 0.0 1.2 1 0 0 1 1 1 1 dUTPase HATPase_c PF02518.21 gi|345005139|ref|YP_004807992.1| - 1.2e-18 66.8 0.0 2.8e-18 65.6 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.1 gi|345005139|ref|YP_004807992.1| - 6.8e-08 32.8 0.0 1.9e-07 31.3 0.0 1.7 1 0 0 1 1 1 1 PAS domain HATPase_c_2 PF13581.1 gi|345005139|ref|YP_004807992.1| - 2.5e-06 27.2 0.0 6.5e-06 25.9 0.0 1.8 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS_4 PF08448.5 gi|345005139|ref|YP_004807992.1| - 3.2e-06 27.1 1.0 8e-06 25.8 0.1 2.0 2 0 0 2 2 2 1 PAS fold HATPase_c_3 PF13589.1 gi|345005139|ref|YP_004807992.1| - 0.00017 21.2 0.0 0.00031 20.4 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_5 PF14501.1 gi|345005139|ref|YP_004807992.1| - 0.0032 17.1 0.0 0.0084 15.8 0.0 1.6 2 0 0 2 2 2 1 GHKL domain PAS PF00989.19 gi|345005139|ref|YP_004807992.1| - 0.0049 16.6 0.0 0.0094 15.7 0.0 1.5 1 0 0 1 1 1 1 PAS fold MAPEG PF01124.13 gi|345005140|ref|YP_004807993.1| - 0.021 14.4 0.0 0.029 13.9 0.0 1.2 1 0 0 1 1 1 0 MAPEG family RepB PF07506.6 gi|345005141|ref|YP_004807994.1| - 0.018 14.8 0.0 0.021 14.7 0.0 1.3 1 0 0 1 1 1 0 RepB plasmid partitioning protein Peptidase_M20 PF01546.23 gi|345005142|ref|YP_004807995.1| - 2.8e-25 88.9 1.2 3.5e-25 88.6 0.9 1.1 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.9 gi|345005142|ref|YP_004807995.1| - 3e-06 26.9 0.0 1.2e-05 25.0 0.0 2.0 2 0 0 2 2 2 1 Peptidase dimerisation domain Peptidase_M28 PF04389.12 gi|345005142|ref|YP_004807995.1| - 1.5e-05 24.8 0.8 0.013 15.2 0.2 2.3 2 0 0 2 2 2 2 Peptidase family M28 CRISPR_assoc PF08798.6 gi|345005142|ref|YP_004807995.1| - 0.031 14.0 0.0 0.05 13.3 0.0 1.3 1 0 0 1 1 1 0 CRISPR associated protein Peptidase_M42 PF05343.9 gi|345005142|ref|YP_004807995.1| - 0.058 12.1 0.0 2.6 6.7 0.0 2.2 2 0 0 2 2 2 0 M42 glutamyl aminopeptidase GXGXG PF01493.14 gi|345005142|ref|YP_004807995.1| - 0.1 11.5 0.1 0.16 10.9 0.0 1.2 1 0 0 1 1 1 0 GXGXG motif Rhodanese PF00581.15 gi|345005144|ref|YP_004807997.1| - 8e-16 58.3 0.0 9.1e-16 58.2 0.0 1.1 1 0 0 1 1 1 1 Rhodanese-like domain Prok-JAB PF14464.1 gi|345005145|ref|YP_004807998.1| - 5.4e-19 67.7 0.1 6.5e-19 67.4 0.0 1.1 1 0 0 1 1 1 1 Prokaryotic homologs of the JAB domain JAB PF01398.16 gi|345005145|ref|YP_004807998.1| - 2e-11 43.6 0.0 2.7e-11 43.2 0.0 1.1 1 0 0 1 1 1 1 JAB1/Mov34/MPN/PAD-1 ubiquitin protease UPF0172 PF03665.8 gi|345005145|ref|YP_004807998.1| - 0.11 12.0 0.0 0.34 10.3 0.0 1.7 1 1 0 1 1 1 0 Uncharacterised protein family (UPF0172) Beta-Casp PF10996.3 gi|345005147|ref|YP_004808000.1| - 1.9e-20 73.0 0.0 3.5e-20 72.2 0.0 1.4 1 0 0 1 1 1 1 Beta-Casp domain RMMBL PF07521.7 gi|345005147|ref|YP_004808000.1| - 8.1e-11 41.5 0.1 2e-10 40.3 0.0 1.8 2 0 0 2 2 2 1 RNA-metabolising metallo-beta-lactamase Lactamase_B PF00753.22 gi|345005147|ref|YP_004808000.1| - 2e-10 40.6 1.4 2e-10 40.6 0.9 1.9 2 1 0 2 2 2 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|345005147|ref|YP_004808000.1| - 9.6e-10 38.3 0.0 3.9e-09 36.3 0.0 1.8 2 0 0 2 2 2 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.1 gi|345005147|ref|YP_004808000.1| - 0.13 12.0 0.2 0.38 10.4 0.1 1.9 1 1 1 2 2 2 0 Beta-lactamase superfamily domain QRPTase_C PF01729.14 gi|345005149|ref|YP_004808002.1| - 1.2e-18 67.2 0.0 1.7e-18 66.7 0.0 1.2 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain QRPTase_N PF02749.11 gi|345005149|ref|YP_004808002.1| - 0.00052 19.7 0.0 0.002 17.9 0.0 2.0 2 0 0 2 2 2 1 Quinolinate phosphoribosyl transferase, N-terminal domain Peptidase_MA_2 PF13485.1 gi|345005150|ref|YP_004808003.1| - 2.7e-10 40.3 2.0 2.2e-09 37.4 0.0 2.3 2 0 0 2 2 2 1 Peptidase MA superfamily DUF955 PF06114.8 gi|345005150|ref|YP_004808003.1| - 0.0039 16.8 0.0 0.0089 15.7 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF955) DUF4157 PF13699.1 gi|345005150|ref|YP_004808003.1| - 0.068 13.3 0.0 0.21 11.7 0.0 1.9 1 0 0 1 1 1 0 Domain of unknown function (DUF4157) Peptidase_M76 PF09768.4 gi|345005150|ref|YP_004808003.1| - 0.22 10.9 0.0 0.38 10.2 0.0 1.2 1 0 0 1 1 1 0 Peptidase M76 family Peptidase_MA_2 PF13485.1 gi|345005151|ref|YP_004808004.1| - 0.00016 21.6 0.5 0.00068 19.6 0.0 2.3 2 1 0 2 2 2 1 Peptidase MA superfamily DUF955 PF06114.8 gi|345005151|ref|YP_004808004.1| - 0.001 18.7 0.0 0.0019 17.9 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF955) Peptidase_M76 PF09768.4 gi|345005151|ref|YP_004808004.1| - 0.0034 16.8 0.0 0.0054 16.2 0.0 1.2 1 0 0 1 1 1 1 Peptidase M76 family SprT-like PF10263.4 gi|345005151|ref|YP_004808004.1| - 0.057 13.0 0.0 0.097 12.3 0.0 1.3 1 0 0 1 1 1 0 SprT-like family Gram_pos_anchor PF00746.16 gi|345005151|ref|YP_004808004.1| - 6.3 6.7 7.4 0.24 11.2 0.3 2.1 2 0 0 2 2 2 0 Gram positive anchor Isochorismatase PF00857.15 gi|345005152|ref|YP_004808005.1| - 1.3e-46 158.6 0.1 1.5e-46 158.5 0.0 1.0 1 0 0 1 1 1 1 Isochorismatase family 4HBT PF03061.17 gi|345005153|ref|YP_004808006.1| - 4.2e-13 49.2 1.2 6.5e-13 48.6 0.9 1.2 1 0 0 1 1 1 1 Thioesterase superfamily DUF4442 PF14539.1 gi|345005153|ref|YP_004808006.1| - 7.8e-09 35.6 0.0 1e-08 35.2 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4442) 4HBT_3 PF13622.1 gi|345005153|ref|YP_004808006.1| - 0.00048 19.9 0.7 0.0006 19.6 0.5 1.1 1 0 0 1 1 1 1 Thioesterase-like superfamily Docking PF08990.6 gi|345005153|ref|YP_004808006.1| - 0.0022 17.1 0.1 0.0056 15.8 0.1 1.7 1 0 0 1 1 1 1 Erythronolide synthase docking Peptidase_M23 PF01551.17 gi|345005154|ref|YP_004808007.1| - 0.14 12.2 0.0 0.38 10.8 0.0 1.7 1 0 0 1 1 1 0 Peptidase family M23 BPL_LplA_LipB PF03099.14 gi|345005155|ref|YP_004808008.1| - 0.00021 21.3 0.0 0.00032 20.7 0.0 1.2 1 0 0 1 1 1 1 Biotin/lipoate A/B protein ligase family RnfC_N PF13375.1 gi|345005155|ref|YP_004808008.1| - 0.064 12.9 0.1 0.12 12.1 0.1 1.4 1 0 0 1 1 1 0 RnfC Barrel sandwich hybrid domain Amidohydro_4 PF13147.1 gi|345005156|ref|YP_004808009.1| - 1.2e-34 120.6 18.3 1.4e-34 120.3 12.7 1.1 1 0 0 1 1 1 1 Amidohydrolase Amidohydro_1 PF01979.15 gi|345005156|ref|YP_004808009.1| - 2.8e-21 76.5 0.1 1.9e-20 73.8 0.1 2.0 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_5 PF13594.1 gi|345005156|ref|YP_004808009.1| - 1.6e-14 53.4 0.4 4.7e-14 51.9 0.3 1.9 1 0 0 1 1 1 1 Amidohydrolase Amidohydro_3 PF07969.6 gi|345005156|ref|YP_004808009.1| - 8.1e-07 28.5 22.5 1.2e-05 24.7 12.0 2.4 2 1 0 2 2 2 2 Amidohydrolase family TatD_DNase PF01026.16 gi|345005156|ref|YP_004808009.1| - 0.0036 16.5 0.3 0.013 14.7 0.2 1.9 1 1 0 1 1 1 1 TatD related DNase zf-ribbon_3 PF13248.1 gi|345005157|ref|YP_004808010.1| - 0.088 12.0 0.7 4.7 6.5 0.0 2.1 2 0 0 2 2 2 0 zinc-ribbon domain DZR PF12773.2 gi|345005157|ref|YP_004808010.1| - 0.12 12.2 1.0 0.2 11.5 0.7 1.4 1 1 0 1 1 1 0 Double zinc ribbon UPF0547 PF10571.4 gi|345005157|ref|YP_004808010.1| - 0.21 11.3 1.4 3 7.6 0.1 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Prok-RING_1 PF14446.1 gi|345005157|ref|YP_004808010.1| - 0.24 11.1 1.1 0.94 9.2 0.1 1.9 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 zf-RING_3 PF14369.1 gi|345005157|ref|YP_004808010.1| - 0.9 9.5 4.0 8.2 6.5 2.8 2.2 1 1 0 1 1 1 0 zinc-finger Zn-ribbon_8 PF09723.5 gi|345005157|ref|YP_004808010.1| - 1.5 8.8 5.1 21 5.1 3.4 2.1 1 1 0 1 1 1 0 Zinc ribbon domain FAD_binding_2 PF00890.19 gi|345005158|ref|YP_004808011.1| - 1.4e-117 393.1 8.0 1.4e-117 393.1 5.6 1.7 2 0 0 2 2 2 1 FAD binding domain Succ_DH_flav_C PF02910.15 gi|345005158|ref|YP_004808011.1| - 5.9e-38 129.6 0.5 1e-37 128.8 0.3 1.4 1 0 0 1 1 1 1 Fumarate reductase flavoprotein C-term DAO PF01266.19 gi|345005158|ref|YP_004808011.1| - 7.3e-08 31.6 3.7 9.5e-06 24.7 2.2 2.4 1 1 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.9 gi|345005158|ref|YP_004808011.1| - 2.6e-07 30.7 11.5 6.7e-05 22.8 8.0 3.2 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|345005158|ref|YP_004808011.1| - 1.3e-05 23.8 1.8 0.00016 20.3 0.2 2.8 3 0 0 3 3 3 1 HI0933-like protein GIDA PF01134.17 gi|345005158|ref|YP_004808011.1| - 0.00024 20.0 1.7 0.00024 20.0 1.2 1.9 2 0 0 2 2 2 1 Glucose inhibited division protein A FAD_binding_3 PF01494.14 gi|345005158|ref|YP_004808011.1| - 0.0011 18.1 0.7 0.0021 17.2 0.5 1.4 1 0 0 1 1 1 1 FAD binding domain Thi4 PF01946.12 gi|345005158|ref|YP_004808011.1| - 0.0013 17.8 2.1 0.013 14.6 0.3 2.8 3 0 0 3 3 3 1 Thi4 family FAD_oxidored PF12831.2 gi|345005158|ref|YP_004808011.1| - 0.0022 17.1 6.2 0.006 15.6 4.3 1.8 1 1 0 1 1 1 1 FAD dependent oxidoreductase TPR_9 PF13371.1 gi|345005158|ref|YP_004808011.1| - 0.039 13.8 0.0 0.43 10.4 0.0 2.4 2 0 0 2 2 2 0 Tetratricopeptide repeat Pyr_redox_3 PF13738.1 gi|345005158|ref|YP_004808011.1| - 0.051 13.6 0.6 0.13 12.3 0.1 2.0 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase AlaDh_PNT_C PF01262.16 gi|345005158|ref|YP_004808011.1| - 0.059 12.9 0.1 0.11 12.0 0.1 1.4 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_7 PF13241.1 gi|345005158|ref|YP_004808011.1| - 0.12 12.6 0.0 0.27 11.4 0.0 1.6 1 0 0 1 1 1 0 Putative NAD(P)-binding Fer2_3 PF13085.1 gi|345005159|ref|YP_004808012.1| - 1.1e-31 108.8 0.2 5.5e-31 106.6 0.0 2.0 2 0 0 2 2 2 1 2Fe-2S iron-sulfur cluster binding domain Fer4_8 PF13183.1 gi|345005159|ref|YP_004808012.1| - 3.7e-11 42.8 4.7 8.7e-11 41.6 3.3 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|345005159|ref|YP_004808012.1| - 1.7e-06 28.2 2.3 3.2e-06 27.4 0.5 2.3 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|345005159|ref|YP_004808012.1| - 2.2e-06 27.8 0.5 2.2e-06 27.8 0.4 2.1 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|345005159|ref|YP_004808012.1| - 6.9e-06 26.3 4.7 1.9e-05 24.9 3.3 1.8 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|345005159|ref|YP_004808012.1| - 4e-05 23.9 5.6 0.029 14.7 0.1 2.6 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|345005159|ref|YP_004808012.1| - 8.2e-05 22.3 7.5 0.00021 21.0 5.2 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain YtkA PF13115.1 gi|345005159|ref|YP_004808012.1| - 0.0042 17.4 0.6 0.031 14.6 0.0 2.5 3 0 0 3 3 3 1 YtkA-like Fer4_2 PF12797.2 gi|345005159|ref|YP_004808012.1| - 0.01 15.6 8.7 0.012 15.5 0.8 2.7 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_20 PF14691.1 gi|345005159|ref|YP_004808012.1| - 0.035 13.7 5.6 0.54 9.9 0.3 2.5 1 1 1 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_6 PF12837.2 gi|345005159|ref|YP_004808012.1| - 0.43 10.5 9.8 0.61 10.0 1.8 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_16 PF13484.1 gi|345005159|ref|YP_004808012.1| - 1.4 9.7 9.9 2.3 9.0 1.7 2.7 1 1 2 3 3 3 0 4Fe-4S double cluster binding domain Fer4 PF00037.22 gi|345005159|ref|YP_004808012.1| - 4 7.1 9.3 5.4 6.7 2.1 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_4 PF12800.2 gi|345005159|ref|YP_004808012.1| - 9.6 6.8 13.0 0.86 10.1 0.9 2.7 3 0 0 3 3 2 0 4Fe-4S binding domain Sdh_cyt PF01127.17 gi|345005160|ref|YP_004808013.1| - 5.6e-10 39.1 11.9 7.2e-10 38.7 8.2 1.1 1 0 0 1 1 1 1 Succinate dehydrogenase/Fumarate reductase transmembrane subunit UPF0182 PF03699.8 gi|345005160|ref|YP_004808013.1| - 0.25 9.2 7.6 0.28 9.0 5.3 1.0 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0182) DUF805 PF05656.9 gi|345005160|ref|YP_004808013.1| - 6.8 6.5 8.7 1.5 8.7 1.8 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF805) Sdh_cyt PF01127.17 gi|345005161|ref|YP_004808014.1| - 4.1e-23 81.5 3.8 4.5e-23 81.3 2.6 1.0 1 0 0 1 1 1 1 Succinate dehydrogenase/Fumarate reductase transmembrane subunit Tox-ODYAM1 PF15642.1 gi|345005161|ref|YP_004808014.1| - 0.011 14.4 0.1 0.014 14.1 0.1 1.1 1 0 0 1 1 1 0 Toxin in Odyssella and Amoebophilus Ferric_reduct PF01794.14 gi|345005161|ref|YP_004808014.1| - 0.02 14.9 4.2 0.028 14.5 2.9 1.4 1 1 0 1 1 1 0 Ferric reductase like transmembrane component PgaD PF13994.1 gi|345005161|ref|YP_004808014.1| - 0.054 12.9 3.3 0.075 12.5 2.3 1.2 1 0 0 1 1 1 0 PgaD-like protein Ni_hydr_CYTB PF01292.15 gi|345005161|ref|YP_004808014.1| - 0.18 11.1 6.5 0.59 9.4 1.8 2.2 1 1 1 2 2 2 0 Prokaryotic cytochrome b561 AstE_AspA PF04952.9 gi|345005162|ref|YP_004808015.1| - 1.2e-64 217.9 0.0 1.5e-64 217.7 0.0 1.0 1 0 0 1 1 1 1 Succinylglutamate desuccinylase / Aspartoacylase family DUF347 PF03988.7 gi|345005163|ref|YP_004808016.1| - 0.0023 17.7 5.5 0.099 12.5 1.0 2.3 2 0 0 2 2 2 2 Repeat of Unknown Function (DUF347) Claudin_2 PF13903.1 gi|345005163|ref|YP_004808016.1| - 0.0029 17.3 1.9 0.0036 17.0 1.3 1.1 1 0 0 1 1 1 1 PMP-22/EMP/MP20/Claudin tight junction DUF350 PF03994.9 gi|345005163|ref|YP_004808016.1| - 0.07 12.8 2.5 0.28 10.9 1.8 2.2 1 1 0 1 1 1 0 Domain of Unknown Function (DUF350) DUF1772 PF08592.6 gi|345005163|ref|YP_004808016.1| - 0.13 12.0 2.6 0.15 11.7 1.6 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF1772) DUF4013 PF13197.1 gi|345005163|ref|YP_004808016.1| - 0.15 11.4 5.2 0.18 11.1 3.6 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF4013) Tetraspannin PF00335.15 gi|345005163|ref|YP_004808016.1| - 0.41 9.8 3.8 0.52 9.5 2.6 1.2 1 0 0 1 1 1 0 Tetraspanin family DUF2207 PF09972.4 gi|345005163|ref|YP_004808016.1| - 1.2 7.6 3.6 0.87 8.0 0.9 1.7 1 1 1 2 2 2 0 Predicted membrane protein (DUF2207) MARVEL PF01284.18 gi|345005163|ref|YP_004808016.1| - 8.5 6.1 11.2 72 3.1 8.1 1.8 1 1 0 1 1 1 0 Membrane-associating domain HTH_20 PF12840.2 gi|345005164|ref|YP_004808017.1| - 4.2e-05 23.2 0.2 4.2e-05 23.2 0.1 2.4 3 1 1 4 4 4 1 Helix-turn-helix domain HTH_27 PF13463.1 gi|345005164|ref|YP_004808017.1| - 0.00011 22.4 0.0 0.00021 21.5 0.0 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR_2 PF12802.2 gi|345005164|ref|YP_004808017.1| - 0.00039 20.0 0.1 0.001 18.6 0.1 1.7 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.5 gi|345005164|ref|YP_004808017.1| - 0.0023 17.4 0.3 0.023 14.2 0.0 2.4 2 0 0 2 2 2 1 IclR helix-turn-helix domain TrmB PF01978.14 gi|345005164|ref|YP_004808017.1| - 0.015 15.0 0.0 0.025 14.2 0.0 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_Crp_2 PF13545.1 gi|345005164|ref|YP_004808017.1| - 0.019 14.7 0.0 0.042 13.6 0.0 1.6 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_29 PF13551.1 gi|345005164|ref|YP_004808017.1| - 0.024 14.7 0.4 0.052 13.7 0.1 1.8 2 0 0 2 2 2 0 Winged helix-turn helix HTH_23 PF13384.1 gi|345005164|ref|YP_004808017.1| - 0.073 12.7 0.4 0.16 11.6 0.0 1.7 2 0 0 2 2 2 0 Homeodomain-like domain HTH_5 PF01022.15 gi|345005164|ref|YP_004808017.1| - 0.091 12.4 0.0 0.14 11.8 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_24 PF13412.1 gi|345005164|ref|YP_004808017.1| - 0.11 11.9 0.0 0.19 11.1 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Gram_pos_anchor PF00746.16 gi|345005165|ref|YP_004808018.1| - 0.039 13.7 5.1 2.4 8.0 0.2 2.3 2 0 0 2 2 2 0 Gram positive anchor DUF3040 PF11239.3 gi|345005165|ref|YP_004808018.1| - 0.9 9.6 3.6 0.51 10.4 0.7 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF3040) SepZ PF06066.6 gi|345005165|ref|YP_004808018.1| - 1.7 8.6 6.5 0.45 10.5 1.5 1.9 1 1 1 2 2 2 0 SepZ RimK PF08443.6 gi|345005166|ref|YP_004808019.1| - 6.4e-29 100.7 0.0 9.2e-29 100.2 0.0 1.2 1 0 0 1 1 1 1 RimK-like ATP-grasp domain Zn_protease PF05618.6 gi|345005166|ref|YP_004808019.1| - 1.5e-09 37.6 0.2 4.1e-07 29.7 0.0 2.3 1 1 1 2 2 2 2 Putative ATP-dependant zinc protease GSH-S_ATP PF02955.11 gi|345005166|ref|YP_004808019.1| - 1.8e-06 27.1 0.0 4.6e-06 25.8 0.0 1.6 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, ATP-grasp domain ATP-grasp_3 PF02655.9 gi|345005166|ref|YP_004808019.1| - 8.9e-05 22.4 0.0 0.00032 20.6 0.0 1.9 1 1 0 1 1 1 1 ATP-grasp domain Asp_protease_2 PF13650.1 gi|345005166|ref|YP_004808019.1| - 0.00072 20.0 0.5 0.002 18.5 0.2 1.8 2 0 0 2 2 2 1 Aspartyl protease ATP-grasp PF02222.17 gi|345005166|ref|YP_004808019.1| - 0.0097 15.2 0.0 0.015 14.6 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain HhH-GPD PF00730.20 gi|345005167|ref|YP_004808020.1| - 3.7e-19 68.9 0.0 5.1e-19 68.5 0.0 1.2 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HTH_33 PF13592.1 gi|345005167|ref|YP_004808020.1| - 0.02 14.3 0.0 0.044 13.3 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn helix HHH_5 PF14520.1 gi|345005167|ref|YP_004808020.1| - 0.037 14.1 0.1 0.88 9.7 0.0 2.5 3 0 0 3 3 3 0 Helix-hairpin-helix domain Lactamase_B_2 PF12706.2 gi|345005168|ref|YP_004808021.1| - 1.1e-17 64.2 0.2 1.3e-17 63.9 0.2 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|345005168|ref|YP_004808021.1| - 3.5e-11 43.1 4.5 3.7e-11 43.0 1.8 1.9 1 1 1 2 2 2 1 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.1 gi|345005168|ref|YP_004808021.1| - 0.0026 17.4 0.0 0.0048 16.6 0.0 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain NAD_binding_10 PF13460.1 gi|345005169|ref|YP_004808022.1| - 1.4e-29 103.4 0.0 1.7e-29 103.1 0.0 1.1 1 0 0 1 1 1 1 NADH(P)-binding Epimerase PF01370.16 gi|345005169|ref|YP_004808022.1| - 1.2e-21 77.2 0.0 6e-21 74.9 0.0 2.0 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|345005169|ref|YP_004808022.1| - 5.4e-14 51.5 0.0 1e-12 47.3 0.0 2.0 1 1 1 2 2 2 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.12 gi|345005169|ref|YP_004808022.1| - 3.2e-13 49.2 0.0 2.5e-08 33.1 0.0 2.1 2 0 0 2 2 2 2 RmlD substrate binding domain NmrA PF05368.8 gi|345005169|ref|YP_004808022.1| - 3.5e-11 42.7 0.0 5e-11 42.3 0.0 1.1 1 0 0 1 1 1 1 NmrA-like family NAD_binding_4 PF07993.7 gi|345005169|ref|YP_004808022.1| - 8.1e-05 21.6 0.0 0.014 14.3 0.0 2.4 1 1 1 2 2 2 2 Male sterility protein Saccharop_dh PF03435.13 gi|345005169|ref|YP_004808022.1| - 0.00033 19.7 0.0 0.00048 19.2 0.0 1.2 1 0 0 1 1 1 1 Saccharopine dehydrogenase adh_short PF00106.20 gi|345005169|ref|YP_004808022.1| - 0.0038 17.1 0.1 0.013 15.4 0.0 1.8 1 1 0 1 1 1 1 short chain dehydrogenase Glyco_trans_4_4 PF13579.1 gi|345005169|ref|YP_004808022.1| - 0.013 15.6 0.0 0.024 14.7 0.0 1.5 1 0 0 1 1 1 0 Glycosyl transferase 4-like domain Polysacc_synt_2 PF02719.10 gi|345005169|ref|YP_004808022.1| - 0.09 11.6 0.0 1.5 7.6 0.0 2.1 1 1 0 1 1 1 0 Polysaccharide biosynthesis protein KR PF08659.5 gi|345005169|ref|YP_004808022.1| - 0.09 12.4 0.0 0.63 9.6 0.0 2.1 2 0 0 2 2 2 0 KR domain ApbA PF02558.11 gi|345005169|ref|YP_004808022.1| - 0.12 11.8 0.0 0.25 10.7 0.0 1.5 1 1 0 1 1 1 0 Ketopantoate reductase PanE/ApbA NAD_binding_2 PF03446.10 gi|345005169|ref|YP_004808022.1| - 0.13 12.0 0.0 0.24 11.2 0.0 1.3 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase Thymidylate_kin PF02223.12 gi|345005170|ref|YP_004808023.1| - 1.8e-35 122.0 0.0 2.2e-35 121.7 0.0 1.1 1 0 0 1 1 1 1 Thymidylate kinase AAA_33 PF13671.1 gi|345005170|ref|YP_004808023.1| - 4.1e-05 23.4 0.0 7.3e-05 22.6 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_28 PF13521.1 gi|345005170|ref|YP_004808023.1| - 0.00057 19.8 0.2 0.0007 19.5 0.2 1.3 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|345005170|ref|YP_004808023.1| - 0.014 15.6 0.0 0.034 14.4 0.0 1.9 1 1 0 1 1 1 0 AAA domain AAA_22 PF13401.1 gi|345005170|ref|YP_004808023.1| - 0.09 12.9 0.0 0.23 11.5 0.0 2.1 1 1 0 1 1 1 0 AAA domain AAA_17 PF13207.1 gi|345005170|ref|YP_004808023.1| - 0.11 13.3 0.2 0.7 10.7 0.2 2.3 1 1 0 1 1 1 0 AAA domain ABC2_membrane_5 PF13346.1 gi|345005171|ref|YP_004808024.1| - 0.14 11.3 2.8 0.17 11.1 2.0 1.1 1 0 0 1 1 1 0 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|345005171|ref|YP_004808024.1| - 1.3 8.1 10.8 1.4 8.0 7.5 1.0 1 0 0 1 1 1 0 ABC-2 family transporter protein DUF1282 PF06930.7 gi|345005171|ref|YP_004808024.1| - 6 6.4 9.9 24 4.5 6.9 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF1282) AsnC_trans_reg PF01037.16 gi|345005172|ref|YP_004808025.1| - 1.7e-06 27.6 0.0 1.9e-06 27.5 0.0 1.0 1 0 0 1 1 1 1 AsnC family DUF3859 PF12975.2 gi|345005172|ref|YP_004808025.1| - 0.12 12.0 0.0 0.17 11.5 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF3859) TrkA_N PF02254.13 gi|345005173|ref|YP_004808026.1| - 4e-26 91.2 0.4 5.8e-26 90.7 0.3 1.2 1 0 0 1 1 1 1 TrkA-N domain TrkA_C PF02080.16 gi|345005173|ref|YP_004808026.1| - 3.7e-12 45.6 0.2 2.9e-11 42.8 0.0 2.2 2 0 0 2 2 2 1 TrkA-C domain FAD_binding_3 PF01494.14 gi|345005173|ref|YP_004808026.1| - 3.7e-06 26.2 0.1 4.4e-06 25.9 0.1 1.2 1 0 0 1 1 1 1 FAD binding domain UDPG_MGDP_dh_N PF03721.9 gi|345005173|ref|YP_004808026.1| - 5.3e-06 25.9 0.1 7.8e-06 25.3 0.1 1.3 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NAD_binding_7 PF13241.1 gi|345005173|ref|YP_004808026.1| - 6.9e-06 26.2 0.2 1.2e-05 25.5 0.1 1.3 1 0 0 1 1 1 1 Putative NAD(P)-binding DAO PF01266.19 gi|345005173|ref|YP_004808026.1| - 1.4e-05 24.1 0.1 1.7e-05 23.9 0.1 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.1 gi|345005173|ref|YP_004808026.1| - 1.9e-05 24.5 0.5 4e-05 23.5 0.4 1.5 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain XdhC_C PF13478.1 gi|345005173|ref|YP_004808026.1| - 7.4e-05 23.0 0.1 0.00022 21.5 0.1 1.7 2 0 0 2 2 2 1 XdhC Rossmann domain 3HCDH_N PF02737.13 gi|345005173|ref|YP_004808026.1| - 0.00025 20.7 0.4 0.00039 20.1 0.2 1.5 1 1 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_10 PF13460.1 gi|345005173|ref|YP_004808026.1| - 0.00078 19.4 0.7 0.0011 18.9 0.5 1.3 1 0 0 1 1 1 1 NADH(P)-binding Pyr_redox PF00070.22 gi|345005173|ref|YP_004808026.1| - 0.00095 19.5 0.2 0.0021 18.3 0.1 1.6 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase ApbA PF02558.11 gi|345005173|ref|YP_004808026.1| - 0.00097 18.6 0.1 0.0014 18.1 0.0 1.3 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA AlaDh_PNT_C PF01262.16 gi|345005173|ref|YP_004808026.1| - 0.0014 18.1 1.3 0.002 17.7 0.1 1.8 2 1 0 2 2 1 1 Alanine dehydrogenase/PNT, C-terminal domain IlvN PF07991.7 gi|345005173|ref|YP_004808026.1| - 0.0018 17.6 0.1 0.0034 16.7 0.0 1.6 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain CPSase_L_chain PF00289.17 gi|345005173|ref|YP_004808026.1| - 0.0026 17.8 0.1 0.0062 16.6 0.1 1.8 1 1 1 2 2 2 1 Carbamoyl-phosphate synthase L chain, N-terminal domain AdoHcyase_NAD PF00670.16 gi|345005173|ref|YP_004808026.1| - 0.0035 17.1 0.2 0.0064 16.3 0.1 1.5 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain Pyr_redox_2 PF07992.9 gi|345005173|ref|YP_004808026.1| - 0.0038 17.1 0.4 0.0055 16.6 0.3 1.6 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase 2-Hacid_dh_C PF02826.14 gi|345005173|ref|YP_004808026.1| - 0.005 16.0 0.0 0.018 14.1 0.1 1.8 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain B12-binding PF02310.14 gi|345005173|ref|YP_004808026.1| - 0.0068 16.2 0.1 0.012 15.4 0.0 1.4 1 0 0 1 1 1 1 B12 binding domain NAD_binding_2 PF03446.10 gi|345005173|ref|YP_004808026.1| - 0.0091 15.8 0.2 0.021 14.6 0.0 1.7 2 0 0 2 2 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase Pyr_redox_3 PF13738.1 gi|345005173|ref|YP_004808026.1| - 0.01 15.9 0.1 0.013 15.5 0.0 1.3 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.12 gi|345005173|ref|YP_004808026.1| - 0.011 14.8 0.3 0.014 14.4 0.2 1.2 1 0 0 1 1 1 0 Thi4 family Shikimate_DH PF01488.15 gi|345005173|ref|YP_004808026.1| - 0.056 13.5 0.1 0.098 12.7 0.1 1.4 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase Saccharop_dh PF03435.13 gi|345005173|ref|YP_004808026.1| - 0.11 11.4 0.2 0.12 11.3 0.1 1.1 1 0 0 1 1 1 0 Saccharopine dehydrogenase NAD_Gly3P_dh_N PF01210.18 gi|345005173|ref|YP_004808026.1| - 0.12 12.0 0.0 0.25 11.0 0.0 1.5 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NmrA PF05368.8 gi|345005173|ref|YP_004808026.1| - 0.13 11.4 0.1 0.2 10.9 0.1 1.2 1 0 0 1 1 1 0 NmrA-like family AsnC_trans_reg PF01037.16 gi|345005174|ref|YP_004808027.1| - 2.9e-12 46.1 0.1 4.8e-12 45.3 0.0 1.4 1 1 0 1 1 1 1 AsnC family HTH_5 PF01022.15 gi|345005177|ref|YP_004808030.1| - 0.014 15.0 0.4 4.4 7.0 0.0 2.2 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family ATP-grasp_4 PF13535.1 gi|345005178|ref|YP_004808031.1| - 3e-21 76.0 0.1 4.7e-21 75.3 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|345005178|ref|YP_004808031.1| - 1.3e-12 47.0 0.0 1.7e-11 43.4 0.0 2.1 1 1 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon CPSase_L_D2 PF02786.12 gi|345005178|ref|YP_004808031.1| - 3.3e-08 33.0 0.0 0.00071 18.9 0.0 2.5 2 0 0 2 2 2 2 Carbamoyl-phosphate synthase L chain, ATP binding domain Dala_Dala_lig_C PF07478.8 gi|345005178|ref|YP_004808031.1| - 6.2e-06 25.7 0.0 4e-05 23.1 0.0 2.0 1 1 0 1 1 1 1 D-ala D-ala ligase C-terminus RimK PF08443.6 gi|345005178|ref|YP_004808031.1| - 0.0041 16.6 0.0 0.0065 15.9 0.0 1.2 1 0 0 1 1 1 1 RimK-like ATP-grasp domain ATP-grasp_3 PF02655.9 gi|345005178|ref|YP_004808031.1| - 0.0066 16.3 0.0 0.012 15.5 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp PF02222.17 gi|345005178|ref|YP_004808031.1| - 0.054 12.8 0.0 0.11 11.9 0.0 1.4 1 0 0 1 1 1 0 ATP-grasp domain Bac_luciferase PF00296.15 gi|345005179|ref|YP_004808032.1| - 2.7e-62 210.6 3.4 4e-62 210.1 2.4 1.1 1 0 0 1 1 1 1 Luciferase-like monooxygenase Aldo_ket_red PF00248.16 gi|345005181|ref|YP_004808034.1| - 6.3e-25 87.5 0.0 7.2e-25 87.3 0.0 1.1 1 0 0 1 1 1 1 Aldo/keto reductase family Peptidase_M20 PF01546.23 gi|345005182|ref|YP_004808035.1| - 4.3e-19 68.7 11.0 8.6e-19 67.7 7.6 1.5 1 1 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.9 gi|345005182|ref|YP_004808035.1| - 4e-12 45.8 1.1 7.8e-12 44.9 0.8 1.5 1 0 0 1 1 1 1 Peptidase dimerisation domain AstE_AspA PF04952.9 gi|345005183|ref|YP_004808036.1| - 2.9e-37 128.1 0.2 3.6e-37 127.8 0.1 1.0 1 0 0 1 1 1 1 Succinylglutamate desuccinylase / Aspartoacylase family Peptidase_M14 PF00246.19 gi|345005183|ref|YP_004808036.1| - 2.1e-05 24.2 0.0 0.00026 20.7 0.0 2.0 1 1 0 1 1 1 1 Zinc carboxypeptidase GYD PF08734.6 gi|345005184|ref|YP_004808037.1| - 1.8e-19 69.2 0.0 2e-19 69.1 0.0 1.0 1 0 0 1 1 1 1 GYD domain Amidohydro_1 PF01979.15 gi|345005185|ref|YP_004808038.1| - 1.6e-45 156.2 4.6 2.2e-45 155.7 3.2 1.1 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_5 PF13594.1 gi|345005185|ref|YP_004808038.1| - 3.3e-05 23.6 0.9 0.00013 21.6 0.1 2.6 2 0 0 2 2 2 1 Amidohydrolase A_deaminase PF00962.17 gi|345005185|ref|YP_004808038.1| - 0.0066 15.4 0.0 0.012 14.5 0.0 1.4 1 0 0 1 1 1 1 Adenosine/AMP deaminase Haem_bd PF14376.1 gi|345005185|ref|YP_004808038.1| - 0.14 11.8 0.1 0.24 11.0 0.1 1.3 1 0 0 1 1 1 0 Haem-binding domain DUF1427 PF07235.6 gi|345005186|ref|YP_004808039.1| - 0.021 14.9 4.2 0.026 14.5 2.9 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1427) DUF1049 PF06305.6 gi|345005186|ref|YP_004808039.1| - 4.6 6.8 6.4 0.61 9.6 0.5 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF1049) Pro_isomerase PF00160.16 gi|345005187|ref|YP_004808040.1| - 1.8e-46 158.1 0.0 2.2e-46 157.8 0.0 1.1 1 0 0 1 1 1 1 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD Toxin_57 PF15535.1 gi|345005187|ref|YP_004808040.1| - 0.61 10.1 2.7 4.5 7.3 0.1 2.7 1 1 2 3 3 3 0 Putative toxin 57 She9_MDM33 PF05546.6 gi|345005189|ref|YP_004808042.1| - 4.2e-05 23.1 1.1 4.2e-05 23.1 0.8 1.8 2 0 0 2 2 2 1 She9 / Mdm33 family CCDC155 PF14662.1 gi|345005189|ref|YP_004808042.1| - 0.00013 21.5 2.1 0.00026 20.6 1.5 1.4 1 0 0 1 1 1 1 Coiled-coil region of CCDC155 Tropomyosin_1 PF12718.2 gi|345005189|ref|YP_004808042.1| - 0.00044 20.0 7.5 0.00053 19.8 2.3 2.1 2 0 0 2 2 2 1 Tropomyosin like Laminin_II PF06009.7 gi|345005189|ref|YP_004808042.1| - 0.0036 17.0 0.2 0.0079 15.9 0.1 1.5 1 0 0 1 1 1 1 Laminin Domain II Tropomyosin PF00261.15 gi|345005189|ref|YP_004808042.1| - 0.0047 16.0 4.7 0.0047 16.0 3.2 1.9 2 0 0 2 2 2 1 Tropomyosin eRF1_2 PF03464.10 gi|345005189|ref|YP_004808042.1| - 0.0057 16.9 0.0 0.0096 16.2 0.0 1.3 1 0 0 1 1 1 1 eRF1 domain 2 Mnd1 PF03962.10 gi|345005189|ref|YP_004808042.1| - 0.01 15.5 1.3 0.01 15.5 0.9 1.5 2 0 0 2 2 2 0 Mnd1 family Host_attach PF10116.4 gi|345005189|ref|YP_004808042.1| - 0.011 15.9 0.3 0.011 15.9 0.2 2.1 2 0 0 2 2 2 0 Protein required for attachment to host cells DUF1192 PF06698.6 gi|345005189|ref|YP_004808042.1| - 0.013 15.2 7.5 0.036 13.8 2.0 2.7 2 0 0 2 2 2 0 Protein of unknown function (DUF1192) TSC22 PF01166.13 gi|345005189|ref|YP_004808042.1| - 0.031 14.2 0.7 3 7.8 0.1 2.4 2 0 0 2 2 2 0 TSC-22/dip/bun family DUF1515 PF07439.6 gi|345005189|ref|YP_004808042.1| - 0.033 13.9 0.6 0.077 12.8 0.4 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF1515) YlqD PF11068.3 gi|345005189|ref|YP_004808042.1| - 0.041 13.9 0.7 0.041 13.9 0.5 1.6 2 0 0 2 2 1 0 YlqD protein HR1 PF02185.11 gi|345005189|ref|YP_004808042.1| - 0.049 13.3 2.5 0.057 13.1 0.6 1.9 1 1 1 2 2 2 0 Hr1 repeat GreA_GreB_N PF03449.10 gi|345005189|ref|YP_004808042.1| - 0.11 12.5 0.5 0.11 12.5 0.4 2.5 3 0 0 3 3 2 0 Transcription elongation factor, N-terminal Fmp27_WPPW PF10359.4 gi|345005189|ref|YP_004808042.1| - 0.2 10.0 0.9 0.38 9.1 0.6 1.4 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain CENP-F_leu_zip PF10473.4 gi|345005189|ref|YP_004808042.1| - 0.31 10.8 5.7 0.077 12.8 1.2 1.8 2 0 0 2 2 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 APG6 PF04111.7 gi|345005189|ref|YP_004808042.1| - 0.54 9.2 2.8 0.26 10.3 0.6 1.4 2 0 0 2 2 2 0 Autophagy protein Apg6 WD40_alt PF14077.1 gi|345005189|ref|YP_004808042.1| - 0.55 9.9 2.5 4.5 6.9 0.1 2.5 2 0 0 2 2 2 0 Alternative WD40 repeat motif Pox_A_type_inc PF04508.7 gi|345005189|ref|YP_004808042.1| - 0.92 9.4 5.4 5.2 7.1 0.6 3.2 2 1 0 2 2 2 0 Viral A-type inclusion protein repeat IncA PF04156.9 gi|345005189|ref|YP_004808042.1| - 1.6 8.3 6.8 0.25 10.9 2.2 1.5 2 0 0 2 2 1 0 IncA protein DUF3584 PF12128.3 gi|345005189|ref|YP_004808042.1| - 1.9 5.6 6.0 0.27 8.5 1.5 1.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3584) DUF2968 PF11180.3 gi|345005189|ref|YP_004808042.1| - 2.4 7.4 8.0 0.31 10.4 2.7 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF2968) Seryl_tRNA_N PF02403.17 gi|345005189|ref|YP_004808042.1| - 2.5 8.1 6.0 0.42 10.6 1.3 1.8 2 0 0 2 2 1 0 Seryl-tRNA synthetase N-terminal domain Mto2_bdg PF12808.2 gi|345005189|ref|YP_004808042.1| - 3.2 7.9 6.2 0.73 9.9 1.2 2.2 2 0 0 2 2 2 0 Micro-tubular organiser Mto1 C-term Mto2-binding region TMF_DNA_bd PF12329.3 gi|345005189|ref|YP_004808042.1| - 4.4 7.1 9.2 0.58 9.9 3.0 2.1 2 0 0 2 2 2 0 TATA element modulatory factor 1 DNA binding Prefoldin_2 PF01920.15 gi|345005189|ref|YP_004808042.1| - 5.7 6.7 7.1 9.1 6.0 0.2 3.0 2 1 1 3 3 3 0 Prefoldin subunit DivIC PF04977.10 gi|345005189|ref|YP_004808042.1| - 8.2 5.9 9.2 4.7 6.7 0.1 2.6 2 1 1 3 3 2 0 Septum formation initiator GrpE PF01025.14 gi|345005189|ref|YP_004808042.1| - 8.7 5.8 8.3 5.1 6.6 2.1 2.3 2 1 1 3 3 3 0 GrpE DUF4166 PF13761.1 gi|345005190|ref|YP_004808043.1| - 0.17 11.7 0.2 0.29 10.9 0.1 1.2 1 1 0 1 1 1 0 Domain of unknown function (DUF4166) DUF1611 PF07755.6 gi|345005191|ref|YP_004808044.1| - 9e-105 349.6 0.6 1e-104 349.4 0.4 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1611) MR_MLE_C PF13378.1 gi|345005192|ref|YP_004808045.1| - 1e-19 70.5 0.1 9.5e-19 67.4 0.1 2.3 2 0 0 2 2 2 1 Enolase C-terminal domain-like MR_MLE PF01188.16 gi|345005192|ref|YP_004808045.1| - 8.8e-15 55.0 5.5 9.9e-15 54.8 1.3 2.5 2 0 0 2 2 2 1 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain MR_MLE_N PF02746.11 gi|345005192|ref|YP_004808045.1| - 3.7e-13 49.4 0.1 5.9e-13 48.8 0.1 1.3 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain MAAL_C PF07476.6 gi|345005192|ref|YP_004808045.1| - 0.0055 15.6 0.0 0.012 14.5 0.0 1.5 1 0 0 1 1 1 1 Methylaspartate ammonia-lyase C-terminus PspA_IM30 PF04012.7 gi|345005194|ref|YP_004808047.1| - 8.5e-31 107.0 32.5 1.1e-30 106.6 22.5 1.1 1 0 0 1 1 1 1 PspA/IM30 family AAA_13 PF13166.1 gi|345005194|ref|YP_004808047.1| - 0.0035 15.8 17.3 0.0044 15.5 12.0 1.3 1 0 0 1 1 1 1 AAA domain Snf7 PF03357.16 gi|345005194|ref|YP_004808047.1| - 0.0079 15.5 18.4 0.0079 15.5 12.8 3.5 1 1 1 2 2 1 1 Snf7 Osmo_CC PF08946.5 gi|345005194|ref|YP_004808047.1| - 0.037 14.0 19.5 0.23 11.5 2.8 4.7 1 1 3 4 4 4 0 Osmosensory transporter coiled coil Flagellin_C PF00700.16 gi|345005194|ref|YP_004808047.1| - 0.038 14.1 10.7 2.2 8.4 0.0 4.1 2 1 2 4 4 4 0 Bacterial flagellin C-terminal helical region Cut8_C PF08559.5 gi|345005194|ref|YP_004808047.1| - 0.085 12.6 1.2 0.31 10.8 0.0 2.4 1 1 1 2 2 2 0 Cut8 six-helix bundle DUF3584 PF12128.3 gi|345005194|ref|YP_004808047.1| - 0.11 9.8 26.3 0.13 9.5 18.2 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) BLOC1_2 PF10046.4 gi|345005194|ref|YP_004808047.1| - 0.18 11.9 17.7 2.4 8.3 0.5 3.3 2 1 1 3 3 3 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 IncA PF04156.9 gi|345005194|ref|YP_004808047.1| - 0.26 10.8 29.4 5.2 6.6 11.5 2.4 1 1 1 2 2 2 0 IncA protein Spc7 PF08317.6 gi|345005194|ref|YP_004808047.1| - 0.26 9.9 25.0 0.054 12.1 10.3 2.0 1 1 1 2 2 2 0 Spc7 kinetochore protein ERM PF00769.14 gi|345005194|ref|YP_004808047.1| - 0.29 10.6 38.6 0.4 10.1 26.7 1.3 1 0 0 1 1 1 0 Ezrin/radixin/moesin family DUF972 PF06156.8 gi|345005194|ref|YP_004808047.1| - 0.42 10.9 26.3 1.4 9.2 5.4 3.2 1 1 2 3 3 3 0 Protein of unknown function (DUF972) DASH_Dam1 PF08653.5 gi|345005194|ref|YP_004808047.1| - 0.45 10.3 2.6 60 3.5 0.2 3.5 3 1 0 3 3 3 0 DASH complex subunit Dam1 DivIC PF04977.10 gi|345005194|ref|YP_004808047.1| - 0.57 9.6 26.2 0.2 11.1 4.1 3.6 2 1 0 3 3 3 0 Septum formation initiator DUF3450 PF11932.3 gi|345005194|ref|YP_004808047.1| - 0.6 9.3 23.3 2.8 7.1 6.4 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF3450) DUF2217 PF10265.4 gi|345005194|ref|YP_004808047.1| - 0.89 8.2 13.9 1.1 7.9 9.6 1.1 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2217) Baculo_PEP_C PF04513.7 gi|345005194|ref|YP_004808047.1| - 1.1 9.0 4.2 3.5 7.4 2.6 2.2 1 1 0 1 1 1 0 Baculovirus polyhedron envelope protein, PEP, C terminus TBPIP PF07106.8 gi|345005194|ref|YP_004808047.1| - 2.2 7.8 25.3 0.74 9.3 3.2 2.9 1 1 2 3 3 3 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) V_ATPase_I PF01496.14 gi|345005194|ref|YP_004808047.1| - 2.3 5.9 20.7 4.5 4.9 13.1 2.0 1 1 1 2 2 2 0 V-type ATPase 116kDa subunit family DUF948 PF06103.6 gi|345005194|ref|YP_004808047.1| - 3.1 7.7 8.2 4.5 7.1 0.5 3.2 1 1 1 3 3 3 0 Bacterial protein of unknown function (DUF948) STAT_alpha PF01017.15 gi|345005194|ref|YP_004808047.1| - 3.7 7.2 19.8 3 7.5 8.1 2.9 1 1 2 3 3 3 0 STAT protein, all-alpha domain Hemagglutinin PF00509.13 gi|345005194|ref|YP_004808047.1| - 4 5.4 6.4 1.6 6.7 0.1 2.1 1 1 1 2 2 2 0 Haemagglutinin ADIP PF11559.3 gi|345005194|ref|YP_004808047.1| - 4.5 7.1 27.9 9 6.1 6.4 2.9 1 1 2 3 3 3 0 Afadin- and alpha -actinin-Binding DUF479 PF04336.7 gi|345005194|ref|YP_004808047.1| - 5.5 7.1 10.8 16 5.6 0.1 3.2 1 1 2 3 3 3 0 Protein of unknown function, DUF479 Cortex-I_coil PF09304.5 gi|345005194|ref|YP_004808047.1| - 5.6 7.0 33.6 0.1 12.6 8.0 3.4 1 1 2 3 3 3 0 Cortexillin I, coiled coil DUF4226 PF10774.4 gi|345005194|ref|YP_004808047.1| - 5.7 7.0 19.7 0.98 9.4 3.3 2.7 2 1 1 3 3 3 0 Domain of unknown function (DUF4226) Fib_alpha PF08702.5 gi|345005194|ref|YP_004808047.1| - 9.4 6.3 16.4 9.6 6.3 9.8 2.0 1 1 2 3 3 3 0 Fibrinogen alpha/beta chain family Abhydrolase_5 PF12695.2 gi|345005195|ref|YP_004808048.1| - 1.1e-09 38.2 0.1 1.6e-09 37.6 0.1 1.2 1 0 0 1 1 1 1 Alpha/beta hydrolase family Peptidase_S15 PF02129.13 gi|345005195|ref|YP_004808048.1| - 0.00086 18.8 0.1 0.0012 18.3 0.1 1.2 1 0 0 1 1 1 1 X-Pro dipeptidyl-peptidase (S15 family) Abhydrolase_6 PF12697.2 gi|345005195|ref|YP_004808048.1| - 0.0023 17.8 6.1 0.03 14.2 1.9 2.2 1 1 1 2 2 2 2 Alpha/beta hydrolase family DUF1129 PF06570.6 gi|345005196|ref|YP_004808049.1| - 3.7 6.8 6.8 4.5 6.5 4.7 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1129) PgaD PF13994.1 gi|345005196|ref|YP_004808049.1| - 8.2 5.9 6.8 2.2 7.7 0.8 2.0 2 0 0 2 2 2 0 PgaD-like protein HTH_23 PF13384.1 gi|345005197|ref|YP_004808050.1| - 6e-05 22.5 0.1 0.00011 21.6 0.1 1.4 1 0 0 1 1 1 1 Homeodomain-like domain TrmB PF01978.14 gi|345005197|ref|YP_004808050.1| - 0.00035 20.2 0.0 0.00056 19.5 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_29 PF13551.1 gi|345005197|ref|YP_004808050.1| - 0.0012 18.9 0.0 0.0027 17.8 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn helix HTH_28 PF13518.1 gi|345005197|ref|YP_004808050.1| - 0.018 15.0 0.2 0.058 13.4 0.1 1.9 3 0 0 3 3 3 0 Helix-turn-helix domain MarR PF01047.17 gi|345005197|ref|YP_004808050.1| - 0.047 13.3 0.0 0.079 12.6 0.0 1.3 1 0 0 1 1 1 0 MarR family Aminoglyc_resit PF10706.4 gi|345005198|ref|YP_004808051.1| - 0.0001 21.9 0.1 0.0057 16.2 0.1 2.2 1 1 0 2 2 2 2 Aminoglycoside-2''-adenylyltransferase NTP_transf_5 PF14907.1 gi|345005198|ref|YP_004808051.1| - 0.00034 20.0 0.0 0.00048 19.5 0.0 1.4 1 0 0 1 1 1 1 Uncharacterised nucleotidyltransferase DUF1814 PF08843.6 gi|345005198|ref|YP_004808051.1| - 0.012 15.3 0.3 0.022 14.5 0.2 1.7 1 1 0 1 1 1 0 Nucleotidyl transferase of unknown function (DUF1814) DUF955 PF06114.8 gi|345005199|ref|YP_004808052.1| - 0.01 15.5 0.1 0.011 15.4 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF955) OGG_N PF07934.7 gi|345005199|ref|YP_004808052.1| - 0.017 15.0 0.0 0.018 15.0 0.0 1.1 1 0 0 1 1 1 0 8-oxoguanine DNA glycosylase, N-terminal domain DDE_Tnp_1 PF01609.16 gi|345005201|ref|YP_004808054.1| - 0.0036 16.8 0.0 0.0045 16.5 0.0 1.2 1 0 0 1 1 1 1 Transposase DDE domain OrfB_Zn_ribbon PF07282.6 gi|345005202|ref|YP_004808055.1| - 2.7e-20 71.7 0.4 5.9e-20 70.6 0.2 1.6 1 0 0 1 1 1 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.14 gi|345005202|ref|YP_004808055.1| - 3.1e-12 46.4 0.0 7.6e-12 45.1 0.0 1.6 2 0 0 2 2 2 1 Probable transposase IBR PF01485.16 gi|345005202|ref|YP_004808055.1| - 0.014 15.2 0.9 0.014 15.2 0.6 2.2 2 0 0 2 2 2 0 IBR domain TFIIS_C PF01096.13 gi|345005203|ref|YP_004808056.1| - 1.5e-15 56.5 1.7 1.5e-15 56.5 1.2 3.1 3 1 0 3 3 3 1 Transcription factor S-II (TFIIS) RNA_POL_M_15KD PF02150.11 gi|345005203|ref|YP_004808056.1| - 4e-07 29.6 7.9 5.5e-07 29.1 0.5 3.0 3 0 0 3 3 3 1 RNA polymerases M/15 Kd subunit DZR PF12773.2 gi|345005203|ref|YP_004808056.1| - 1.4e-05 24.8 9.2 0.0012 18.6 0.6 2.7 2 1 0 2 2 2 2 Double zinc ribbon A2L_zn_ribbon PF08792.5 gi|345005203|ref|YP_004808056.1| - 7.9e-05 21.9 8.9 0.0077 15.6 0.8 3.5 3 1 0 3 3 3 1 A2L zinc ribbon domain OrfB_Zn_ribbon PF07282.6 gi|345005203|ref|YP_004808056.1| - 0.00079 19.0 11.0 0.08 12.6 1.4 2.6 2 1 0 2 2 2 2 Putative transposase DNA-binding domain Zn_Tnp_IS1595 PF12760.2 gi|345005203|ref|YP_004808056.1| - 0.0059 16.3 0.8 0.0059 16.3 0.6 2.7 2 1 1 3 3 3 1 Transposase zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|345005203|ref|YP_004808056.1| - 0.0079 15.7 6.0 0.62 9.6 0.0 3.6 3 1 0 3 3 3 1 zinc-ribbon domain DNA_RNApol_7kD PF03604.8 gi|345005203|ref|YP_004808056.1| - 0.0084 15.5 11.7 0.32 10.5 0.1 3.7 3 1 0 3 3 3 2 DNA directed RNA polymerase, 7 kDa subunit Prok-RING_1 PF14446.1 gi|345005203|ref|YP_004808056.1| - 0.013 15.2 9.2 0.025 14.3 1.4 3.0 3 0 0 3 3 3 0 Prokaryotic RING finger family 1 zinc_ribbon_4 PF13717.1 gi|345005203|ref|YP_004808056.1| - 0.016 14.8 7.0 0.6 9.8 0.0 3.5 3 1 0 3 3 3 0 zinc-ribbon domain HypA PF01155.14 gi|345005203|ref|YP_004808056.1| - 0.049 13.3 9.0 0.3 10.7 0.6 2.8 2 1 0 2 2 2 0 Hydrogenase expression/synthesis hypA family Cytochrome_C554 PF13435.1 gi|345005203|ref|YP_004808056.1| - 0.07 13.1 1.9 0.12 12.3 1.4 1.4 1 1 0 1 1 1 0 Cytochrome c554 and c-prime TF_Zn_Ribbon PF08271.7 gi|345005203|ref|YP_004808056.1| - 0.072 12.4 11.2 5 6.5 0.0 4.2 3 1 0 3 3 3 0 TFIIB zinc-binding GFA PF04828.9 gi|345005203|ref|YP_004808056.1| - 0.082 12.8 8.2 1.3 9.0 0.4 3.4 1 1 2 3 3 3 0 Glutathione-dependent formaldehyde-activating enzyme UPF0547 PF10571.4 gi|345005203|ref|YP_004808056.1| - 0.093 12.4 12.2 0.41 10.3 0.1 3.6 4 0 0 4 4 4 0 Uncharacterised protein family UPF0547 zf-ribbon_3 PF13248.1 gi|345005203|ref|YP_004808056.1| - 0.14 11.4 11.8 4.5 6.5 0.2 3.8 3 1 0 3 3 3 0 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|345005203|ref|YP_004808056.1| - 0.23 11.0 7.1 8.8 5.9 0.2 3.7 4 0 0 4 4 4 0 zinc-ribbon domain Zn_ribbon_recom PF13408.1 gi|345005203|ref|YP_004808056.1| - 0.36 11.1 8.6 5.7 7.2 0.0 3.7 3 1 0 3 3 3 0 Recombinase zinc beta ribbon domain IBR PF01485.16 gi|345005203|ref|YP_004808056.1| - 0.37 10.6 8.3 32 4.4 4.1 3.2 2 1 0 2 2 2 0 IBR domain DUF35_N PF12172.3 gi|345005203|ref|YP_004808056.1| - 0.53 10.2 9.3 35 4.4 0.1 4.2 4 0 0 4 4 4 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Lar_restr_allev PF14354.1 gi|345005203|ref|YP_004808056.1| - 0.96 9.8 16.0 6.2 7.2 2.1 3.7 1 1 1 2 2 2 0 Restriction alleviation protein Lar Nudix_N_2 PF14803.1 gi|345005203|ref|YP_004808056.1| - 1 9.1 14.6 1.8 8.3 2.2 3.9 2 2 1 3 3 3 0 Nudix N-terminal DUF2318 PF10080.4 gi|345005203|ref|YP_004808056.1| - 2.1 8.1 9.3 2 8.2 1.5 2.8 1 1 1 2 2 2 0 Predicted membrane protein (DUF2318) zf-trcl PF13451.1 gi|345005203|ref|YP_004808056.1| - 4 7.1 16.1 47 3.7 0.1 4.2 3 1 0 3 3 3 0 Probable zinc-binding domain C1_1 PF00130.17 gi|345005203|ref|YP_004808056.1| - 7.4 6.3 10.2 2.1 8.1 0.7 2.8 2 1 0 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) zinc-ribbons_6 PF07191.7 gi|345005203|ref|YP_004808056.1| - 9 6.1 8.1 2.2 8.1 0.4 2.7 2 1 0 2 2 2 0 zinc-ribbons Apolipoprotein PF01442.13 gi|345005205|ref|YP_004808058.1| - 0.00025 20.6 4.3 0.00091 18.7 3.0 1.8 1 1 0 1 1 1 1 Apolipoprotein A1/A4/E domain Baculo_PEP_C PF04513.7 gi|345005205|ref|YP_004808058.1| - 0.0009 19.0 2.4 0.012 15.4 0.2 2.2 1 1 1 2 2 2 2 Baculovirus polyhedron envelope protein, PEP, C terminus Prefoldin_2 PF01920.15 gi|345005205|ref|YP_004808058.1| - 0.0026 17.4 1.3 4.5 7.0 0.4 3.2 3 0 0 3 3 3 0 Prefoldin subunit RmuC PF02646.11 gi|345005205|ref|YP_004808058.1| - 0.0029 16.4 0.1 0.66 8.7 0.0 2.1 2 0 0 2 2 2 1 RmuC family DUF3584 PF12128.3 gi|345005205|ref|YP_004808058.1| - 0.0066 13.8 3.3 0.032 11.5 0.0 1.9 1 1 1 2 2 2 1 Protein of unknown function (DUF3584) Seryl_tRNA_N PF02403.17 gi|345005205|ref|YP_004808058.1| - 0.008 16.1 2.2 0.85 9.6 0.2 2.8 2 1 1 3 3 3 1 Seryl-tRNA synthetase N-terminal domain Laminin_II PF06009.7 gi|345005205|ref|YP_004808058.1| - 0.01 15.5 1.8 1.2 8.9 0.1 2.3 2 0 0 2 2 2 0 Laminin Domain II AAA_13 PF13166.1 gi|345005205|ref|YP_004808058.1| - 0.013 14.0 0.4 0.018 13.5 0.3 1.1 1 0 0 1 1 1 0 AAA domain BLOC1_2 PF10046.4 gi|345005205|ref|YP_004808058.1| - 0.014 15.5 1.8 1.9 8.6 0.1 2.9 2 1 1 3 3 3 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 IncA PF04156.9 gi|345005205|ref|YP_004808058.1| - 0.026 14.1 3.5 0.37 10.3 1.5 2.1 1 1 0 1 1 1 0 IncA protein ZapA PF05164.8 gi|345005205|ref|YP_004808058.1| - 0.028 14.3 2.0 2.7 7.9 0.1 3.2 3 1 0 3 3 3 0 Cell division protein ZapA RHH_1 PF01402.16 gi|345005205|ref|YP_004808058.1| - 0.034 14.0 5.0 0.13 12.1 0.0 3.6 3 1 2 5 5 3 0 Ribbon-helix-helix protein, copG family TPR_MLP1_2 PF07926.7 gi|345005205|ref|YP_004808058.1| - 0.036 13.8 0.5 0.15 11.8 0.0 2.0 2 0 0 2 2 2 0 TPR/MLP1/MLP2-like protein ScpA_ScpB PF02616.9 gi|345005205|ref|YP_004808058.1| - 0.036 13.6 0.2 0.05 13.1 0.1 1.2 1 0 0 1 1 1 0 ScpA/B protein NPV_P10 PF05531.7 gi|345005205|ref|YP_004808058.1| - 0.042 14.0 5.5 3.7 7.8 0.2 3.3 1 1 2 3 3 3 0 Nucleopolyhedrovirus P10 protein TBPIP PF07106.8 gi|345005205|ref|YP_004808058.1| - 0.042 13.3 0.6 2.8 7.4 0.0 2.2 1 1 1 2 2 2 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) FlaC_arch PF05377.6 gi|345005205|ref|YP_004808058.1| - 0.044 13.6 0.9 1.8 8.5 0.0 2.8 3 0 0 3 3 2 0 Flagella accessory protein C (FlaC) zf-ribbon_3 PF13248.1 gi|345005205|ref|YP_004808058.1| - 0.046 12.9 0.7 0.097 11.9 0.5 1.6 1 0 0 1 1 1 0 zinc-ribbon domain PilJ PF13675.1 gi|345005205|ref|YP_004808058.1| - 0.047 14.0 2.8 3.1 8.1 0.4 2.5 1 1 1 2 2 2 0 Type IV pili methyl-accepting chemotaxis transducer N-term DUF4200 PF13863.1 gi|345005205|ref|YP_004808058.1| - 0.05 13.5 0.5 0.1 12.5 0.0 1.8 2 1 0 2 2 1 0 Domain of unknown function (DUF4200) DZR PF12773.2 gi|345005205|ref|YP_004808058.1| - 0.05 13.4 0.3 0.097 12.4 0.2 1.4 1 0 0 1 1 1 0 Double zinc ribbon DUF935 PF06074.7 gi|345005205|ref|YP_004808058.1| - 0.058 12.1 5.8 0.013 14.2 0.8 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF935) HypA PF01155.14 gi|345005205|ref|YP_004808058.1| - 0.074 12.7 0.1 0.13 11.9 0.1 1.4 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family Reo_sigmaC PF04582.7 gi|345005205|ref|YP_004808058.1| - 0.08 12.1 1.1 0.11 11.6 0.8 1.3 1 0 0 1 1 1 0 Reovirus sigma C capsid protein Syntaxin PF00804.20 gi|345005205|ref|YP_004808058.1| - 0.081 13.0 1.7 4.2 7.5 0.0 2.7 2 1 0 2 2 2 0 Syntaxin Tmemb_55A PF09788.4 gi|345005205|ref|YP_004808058.1| - 0.087 11.9 0.0 0.13 11.3 0.0 1.2 1 0 0 1 1 1 0 Transmembrane protein 55A DUF948 PF06103.6 gi|345005205|ref|YP_004808058.1| - 0.092 12.6 1.1 1.2 9.0 0.1 2.4 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF948) DUF4404 PF14357.1 gi|345005205|ref|YP_004808058.1| - 0.099 13.0 4.3 5.1 7.5 2.1 3.3 1 1 1 2 2 2 0 Domain of unknown function (DUF4404) PAPS_reduct PF01507.14 gi|345005205|ref|YP_004808058.1| - 0.14 11.9 0.0 0.28 10.9 0.0 1.4 1 0 0 1 1 1 0 Phosphoadenosine phosphosulfate reductase family Syntaxin_2 PF14523.1 gi|345005205|ref|YP_004808058.1| - 0.14 12.1 0.3 3.1 7.8 0.1 2.3 1 1 1 2 2 2 0 Syntaxin-like protein BBP1_C PF15272.1 gi|345005205|ref|YP_004808058.1| - 0.15 11.6 1.8 0.73 9.3 0.3 2.2 1 1 1 2 2 2 0 Spindle pole body component BBP1, C-terminal HlyD PF00529.15 gi|345005205|ref|YP_004808058.1| - 0.19 11.0 4.5 0.39 9.9 3.1 1.5 1 1 0 1 1 1 0 HlyD family secretion protein DUF904 PF06005.7 gi|345005205|ref|YP_004808058.1| - 0.2 11.9 3.6 0.68 10.2 1.1 2.9 2 1 0 2 2 2 0 Protein of unknown function (DUF904) DUF1664 PF07889.7 gi|345005205|ref|YP_004808058.1| - 0.22 11.3 2.3 1.4 8.7 0.8 2.4 1 1 2 3 3 3 0 Protein of unknown function (DUF1664) DUF972 PF06156.8 gi|345005205|ref|YP_004808058.1| - 0.23 11.8 1.1 24 5.3 0.0 3.1 2 1 0 2 2 2 0 Protein of unknown function (DUF972) TMCO5 PF14992.1 gi|345005205|ref|YP_004808058.1| - 0.23 10.5 5.1 0.69 8.9 2.7 1.9 1 1 1 2 2 2 0 TMCO5 family COG5 PF10392.4 gi|345005205|ref|YP_004808058.1| - 0.26 11.2 1.4 2.8 7.8 0.0 2.2 1 1 1 2 2 2 0 Golgi transport complex subunit 5 Syntaxin-6_N PF09177.6 gi|345005205|ref|YP_004808058.1| - 0.27 11.6 3.3 1.2 9.5 0.2 2.8 1 1 2 3 3 3 0 Syntaxin 6, N-terminal CorA PF01544.13 gi|345005205|ref|YP_004808058.1| - 0.43 9.5 4.6 4.3 6.2 0.0 2.3 1 1 1 2 2 2 0 CorA-like Mg2+ transporter protein DUF883 PF05957.8 gi|345005205|ref|YP_004808058.1| - 0.54 10.6 8.7 0.46 10.9 1.1 2.8 1 1 0 2 2 2 0 Bacterial protein of unknown function (DUF883) DUF848 PF05852.6 gi|345005205|ref|YP_004808058.1| - 0.96 9.2 5.8 13 5.6 1.6 2.4 1 1 1 2 2 2 0 Gammaherpesvirus protein of unknown function (DUF848) HalX PF08663.5 gi|345005205|ref|YP_004808058.1| - 7.1 6.6 15.4 20 5.2 0.1 4.4 3 2 1 4 4 4 0 HalX domain KaiC PF06745.8 gi|345005206|ref|YP_004808059.1| - 4.9e-05 22.5 0.0 0.089 11.8 0.0 2.4 2 1 0 2 2 2 2 KaiC AAA_25 PF13481.1 gi|345005206|ref|YP_004808059.1| - 0.00029 20.3 0.5 0.00086 18.7 0.4 1.8 1 1 0 1 1 1 1 AAA domain GHMP_kinases_N PF00288.21 gi|345005207|ref|YP_004808060.1| - 4.9e-06 26.5 0.4 4.9e-06 26.5 0.3 1.9 2 0 0 2 2 2 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.8 gi|345005207|ref|YP_004808060.1| - 0.015 15.5 0.5 0.031 14.4 0.3 1.6 1 0 0 1 1 1 0 GHMP kinases C terminal PilJ PF13675.1 gi|345005208|ref|YP_004808061.1| - 0.094 13.0 0.8 0.6 10.4 0.1 1.9 1 1 1 2 2 2 0 Type IV pili methyl-accepting chemotaxis transducer N-term DASH_Dad4 PF08650.5 gi|345005208|ref|YP_004808061.1| - 0.11 12.4 0.0 0.4 10.6 0.0 1.8 1 1 1 2 2 2 0 DASH complex subunit Dad4 DUF4244 PF14029.1 gi|345005209|ref|YP_004808062.1| - 0.039 13.0 3.0 0.049 12.7 2.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF4244) PSI_8 PF00796.13 gi|345005209|ref|YP_004808062.1| - 2 8.0 5.8 0.65 9.6 1.3 2.1 1 1 1 2 2 2 0 Photosystem I reaction centre subunit VIII TGT_C2 PF14810.1 gi|345005210|ref|YP_004808063.1| - 3.4e-20 71.6 0.1 1.1e-19 70.0 0.0 1.9 2 0 0 2 2 2 1 Patch-forming domain C2 of tRNA-guanine transglycosylase TGT PF01702.13 gi|345005210|ref|YP_004808063.1| - 2.7e-15 56.3 0.0 5.4e-15 55.3 0.0 1.5 1 0 0 1 1 1 1 Queuine tRNA-ribosyltransferase PUA PF01472.15 gi|345005210|ref|YP_004808063.1| - 7e-12 44.9 0.2 1.6e-11 43.7 0.1 1.5 1 0 0 1 1 1 1 PUA domain TGT PF01702.13 gi|345005211|ref|YP_004808064.1| - 1.2e-45 155.6 0.0 1.6e-45 155.2 0.0 1.1 1 0 0 1 1 1 1 Queuine tRNA-ribosyltransferase Abi PF02517.11 gi|345005212|ref|YP_004808065.1| - 6.1e-15 55.1 0.5 6.1e-15 55.1 0.3 2.7 1 1 0 2 2 2 1 CAAX protease self-immunity NUDIX PF00293.23 gi|345005213|ref|YP_004808066.1| - 6.3e-16 58.2 0.2 8.3e-16 57.8 0.2 1.1 1 0 0 1 1 1 1 NUDIX domain Spore_YpjB PF09577.5 gi|345005213|ref|YP_004808066.1| - 0.11 12.0 0.0 0.13 11.7 0.0 1.1 1 0 0 1 1 1 0 Sporulation protein YpjB (SpoYpjB) Arylsulfotran_2 PF14269.1 gi|345005214|ref|YP_004808067.1| - 1.1e-07 31.3 0.4 3.7e-06 26.2 0.1 2.7 1 1 1 2 2 2 1 Arylsulfotransferase (ASST) Arylsulfotrans PF05935.6 gi|345005214|ref|YP_004808067.1| - 2e-05 23.3 0.1 0.00013 20.6 0.0 2.0 1 1 0 2 2 2 1 Arylsulfotransferase (ASST) Cupin_1 PF00190.17 gi|345005214|ref|YP_004808067.1| - 0.13 11.7 0.0 0.24 10.8 0.0 1.4 1 0 0 1 1 1 0 Cupin AAA_33 PF13671.1 gi|345005215|ref|YP_004808068.1| - 2e-29 102.3 0.1 2.5e-29 102.0 0.1 1.1 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|345005215|ref|YP_004808068.1| - 5.4e-11 43.3 0.4 9.3e-11 42.6 0.3 1.4 1 1 0 1 1 1 1 AAA domain Zeta_toxin PF06414.7 gi|345005215|ref|YP_004808068.1| - 5.8e-11 41.8 0.9 2.8e-10 39.6 0.6 1.8 1 1 0 1 1 1 1 Zeta toxin AAA_18 PF13238.1 gi|345005215|ref|YP_004808068.1| - 7.8e-11 42.3 0.5 1.9e-10 41.1 0.3 1.6 1 1 0 1 1 1 1 AAA domain KTI12 PF08433.5 gi|345005215|ref|YP_004808068.1| - 6.5e-09 35.3 0.0 7.6e-09 35.1 0.0 1.0 1 0 0 1 1 1 1 Chromatin associated protein KTI12 AAA_22 PF13401.1 gi|345005215|ref|YP_004808068.1| - 3.4e-07 30.4 0.0 5.6e-07 29.7 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|345005215|ref|YP_004808068.1| - 8.7e-07 29.0 0.3 1.8e-06 28.0 0.2 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA PF00004.24 gi|345005215|ref|YP_004808068.1| - 1.6e-06 28.3 0.0 4.3e-06 26.9 0.0 1.7 1 1 1 2 2 2 1 ATPase family associated with various cellular activities (AAA) ADK PF00406.17 gi|345005215|ref|YP_004808068.1| - 2.5e-05 24.1 0.1 0.00031 20.6 0.1 2.0 1 1 0 1 1 1 1 Adenylate kinase AAA_19 PF13245.1 gi|345005215|ref|YP_004808068.1| - 0.00012 21.7 0.5 0.00045 19.9 0.3 2.3 1 1 0 1 1 1 1 Part of AAA domain AAA_5 PF07728.9 gi|345005215|ref|YP_004808068.1| - 0.00015 21.4 0.0 0.00044 19.9 0.0 1.8 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) RNA_helicase PF00910.17 gi|345005215|ref|YP_004808068.1| - 0.00047 20.2 0.0 0.001 19.2 0.0 1.5 1 1 0 1 1 1 1 RNA helicase AAA_28 PF13521.1 gi|345005215|ref|YP_004808068.1| - 0.0021 18.0 0.1 0.0036 17.2 0.1 1.6 1 1 0 1 1 1 1 AAA domain AAA_11 PF13086.1 gi|345005215|ref|YP_004808068.1| - 0.0032 17.0 0.0 0.0043 16.6 0.0 1.3 1 1 0 1 1 1 1 AAA domain APS_kinase PF01583.15 gi|345005215|ref|YP_004808068.1| - 0.0045 16.6 0.0 0.0051 16.4 0.0 1.2 1 0 0 1 1 1 1 Adenylylsulphate kinase CoaE PF01121.15 gi|345005215|ref|YP_004808068.1| - 0.0062 15.9 0.1 0.45 9.8 0.0 2.1 2 0 0 2 2 2 1 Dephospho-CoA kinase CPT PF07931.7 gi|345005215|ref|YP_004808068.1| - 0.0065 16.1 1.2 0.12 11.9 0.8 2.1 1 1 0 1 1 1 1 Chloramphenicol phosphotransferase-like protein NTPase_1 PF03266.10 gi|345005215|ref|YP_004808068.1| - 0.01 15.5 0.0 0.022 14.4 0.0 1.5 1 0 0 1 1 1 0 NTPase MobB PF03205.9 gi|345005215|ref|YP_004808068.1| - 0.011 15.4 0.0 0.018 14.7 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B Mg_chelatase PF01078.16 gi|345005215|ref|YP_004808068.1| - 0.02 14.0 0.0 0.032 13.3 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI KaiC PF06745.8 gi|345005215|ref|YP_004808068.1| - 0.052 12.6 0.3 0.84 8.7 0.0 2.1 2 0 0 2 2 2 0 KaiC AAA_30 PF13604.1 gi|345005215|ref|YP_004808068.1| - 0.078 12.5 0.2 0.16 11.5 0.2 2.0 1 1 0 1 1 1 0 AAA domain RuvB_N PF05496.7 gi|345005215|ref|YP_004808068.1| - 0.078 12.0 0.0 0.18 10.7 0.0 1.6 1 0 0 1 1 1 0 Holliday junction DNA helicase ruvB N-terminus ArgK PF03308.11 gi|345005215|ref|YP_004808068.1| - 0.082 11.6 0.1 0.086 11.6 0.1 1.3 1 1 0 1 1 1 0 ArgK protein DUF2075 PF09848.4 gi|345005215|ref|YP_004808068.1| - 0.099 11.5 0.0 0.12 11.3 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) PRK PF00485.13 gi|345005215|ref|YP_004808068.1| - 0.11 12.0 0.0 0.16 11.5 0.0 1.3 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family AAA_24 PF13479.1 gi|345005215|ref|YP_004808068.1| - 0.15 11.5 0.0 0.24 10.9 0.0 1.5 2 0 0 2 2 2 0 AAA domain GPDPase_memb PF10110.4 gi|345005222|ref|YP_004808075.1| - 2.5e-05 23.7 1.2 5.6e-05 22.5 0.8 1.6 1 0 0 1 1 1 1 Membrane domain of glycerophosphoryl diester phosphodiesterase DUF975 PF06161.6 gi|345005222|ref|YP_004808075.1| - 0.00046 20.0 7.0 0.00059 19.6 3.9 1.8 1 1 0 1 1 1 1 Protein of unknown function (DUF975) UPF0259 PF06790.6 gi|345005222|ref|YP_004808075.1| - 0.00073 19.0 8.8 0.00096 18.6 6.1 1.3 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0259) Methyltrn_RNA_2 PF04013.7 gi|345005223|ref|YP_004808076.1| - 3.3e-62 209.6 0.0 3.6e-62 209.4 0.0 1.0 1 0 0 1 1 1 1 Putative SAM-dependent RNA methyltransferase PHO4 PF01384.15 gi|345005224|ref|YP_004808077.1| - 2.9e-62 210.2 18.1 4e-62 209.7 12.5 1.2 1 0 0 1 1 1 1 Phosphate transporter family PHO4 PF01384.15 gi|345005225|ref|YP_004808078.1| - 5.7e-40 136.9 32.6 1.1e-39 135.9 22.6 1.5 1 1 0 1 1 1 1 Phosphate transporter family Usp PF00582.21 gi|345005226|ref|YP_004808079.1| - 2.4e-26 92.5 4.8 2.9e-26 92.3 3.4 1.0 1 0 0 1 1 1 1 Universal stress protein family ABC_tran PF00005.22 gi|345005229|ref|YP_004808082.1| - 2.8e-31 108.6 0.0 4.2e-31 108.0 0.0 1.3 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|345005229|ref|YP_004808082.1| - 1.5e-18 66.8 0.2 3.4e-18 65.7 0.1 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|345005229|ref|YP_004808082.1| - 1.5e-05 25.1 0.0 0.011 15.7 0.0 2.1 1 1 0 2 2 2 2 AAA domain AAA_22 PF13401.1 gi|345005229|ref|YP_004808082.1| - 0.0056 16.8 0.1 0.033 14.3 0.1 2.2 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|345005229|ref|YP_004808082.1| - 0.023 14.2 0.1 0.042 13.3 0.0 1.3 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|345005229|ref|YP_004808082.1| - 0.024 14.6 4.0 0.11 12.4 0.4 2.6 2 1 0 2 2 2 0 AAA ATPase domain AAA_18 PF13238.1 gi|345005229|ref|YP_004808082.1| - 0.026 14.8 0.0 0.18 12.1 0.0 2.2 2 0 0 2 2 2 0 AAA domain Sigma54_activat PF00158.21 gi|345005229|ref|YP_004808082.1| - 0.049 13.1 0.0 2.7 7.4 0.0 2.4 2 0 0 2 2 2 0 Sigma-54 interaction domain AAA PF00004.24 gi|345005229|ref|YP_004808082.1| - 0.068 13.3 0.0 0.19 11.9 0.0 1.9 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) DUF258 PF03193.11 gi|345005229|ref|YP_004808082.1| - 0.11 11.7 0.0 0.2 10.8 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 MMR_HSR1 PF01926.18 gi|345005229|ref|YP_004808082.1| - 0.17 11.8 0.0 0.46 10.4 0.0 1.6 1 1 0 1 1 1 0 50S ribosome-binding GTPase ABC_tran PF00005.22 gi|345005230|ref|YP_004808083.1| - 6.8e-27 94.4 0.0 9.4e-27 93.9 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|345005230|ref|YP_004808083.1| - 1.4e-19 70.2 0.2 2.5e-19 69.3 0.1 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|345005230|ref|YP_004808083.1| - 1.2e-05 25.4 0.0 1.9e-05 24.8 0.0 1.3 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|345005230|ref|YP_004808083.1| - 0.00023 20.4 0.0 0.00035 19.8 0.0 1.3 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain DUF2075 PF09848.4 gi|345005230|ref|YP_004808083.1| - 0.032 13.2 0.0 0.046 12.7 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) AAA_22 PF13401.1 gi|345005230|ref|YP_004808083.1| - 0.073 13.2 1.0 2.2 8.4 0.7 2.3 1 1 0 1 1 1 0 AAA domain AAA_15 PF13175.1 gi|345005230|ref|YP_004808083.1| - 0.085 11.8 0.0 0.15 11.0 0.0 1.4 1 0 0 1 1 1 0 AAA ATPase domain BPD_transp_1 PF00528.17 gi|345005231|ref|YP_004808084.1| - 7.9e-36 123.3 12.0 7.9e-36 123.3 8.4 1.9 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.2 gi|345005231|ref|YP_004808084.1| - 8.9e-11 40.9 2.2 8.9e-11 40.9 1.5 3.4 4 1 0 4 4 4 1 N-terminal TM domain of oligopeptide transport permease C DUF3186 PF11382.3 gi|345005231|ref|YP_004808084.1| - 0.42 9.6 1.2 0.67 9.0 0.9 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3186) BPD_transp_1 PF00528.17 gi|345005232|ref|YP_004808085.1| - 1.5e-44 151.7 13.3 1.5e-44 151.7 9.2 2.0 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_5 PF00496.17 gi|345005233|ref|YP_004808086.1| - 3.6e-73 246.5 3.6 4.5e-73 246.2 2.5 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle TAT_signal PF10518.4 gi|345005233|ref|YP_004808086.1| - 0.072 13.1 1.2 0.14 12.1 0.8 1.5 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence G_glu_transpept PF01019.16 gi|345005234|ref|YP_004808087.1| - 1.3e-145 485.7 0.1 1.5e-145 485.5 0.1 1.0 1 0 0 1 1 1 1 Gamma-glutamyltranspeptidase DUF1028 PF06267.7 gi|345005235|ref|YP_004808088.1| - 5.2e-24 84.7 0.0 6.9e-24 84.3 0.0 1.1 1 0 0 1 1 1 1 Family of unknown function (DUF1028) Abhydrolase_6 PF12697.2 gi|345005236|ref|YP_004808089.1| - 6.7e-30 104.6 1.2 8.5e-30 104.3 0.8 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|345005236|ref|YP_004808089.1| - 4e-22 78.9 0.1 5.5e-21 75.1 0.0 2.0 1 1 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_5 PF12695.2 gi|345005236|ref|YP_004808089.1| - 1.5e-08 34.5 0.1 2.3e-07 30.6 0.0 2.0 1 1 0 1 1 1 1 Alpha/beta hydrolase family Thioesterase PF00975.15 gi|345005236|ref|YP_004808089.1| - 0.037 14.2 0.1 0.042 14.0 0.0 1.3 1 0 0 1 1 1 0 Thioesterase domain Hydrolase_4 PF12146.3 gi|345005236|ref|YP_004808089.1| - 0.055 13.3 1.1 0.1 12.4 0.3 1.9 2 0 0 2 2 2 0 Putative lysophospholipase ABC_tran PF00005.22 gi|345005237|ref|YP_004808090.1| - 1.2e-32 113.0 0.0 2.2e-32 112.2 0.0 1.4 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|345005237|ref|YP_004808090.1| - 3.5e-20 72.1 0.1 7.8e-20 71.0 0.1 1.6 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|345005237|ref|YP_004808090.1| - 2.6e-10 40.7 0.2 2.1e-07 31.2 0.0 2.2 1 1 1 2 2 2 2 AAA domain AAA_22 PF13401.1 gi|345005237|ref|YP_004808090.1| - 0.00045 20.3 1.9 0.0052 16.9 1.3 2.3 1 1 0 1 1 1 1 AAA domain AAA_10 PF12846.2 gi|345005237|ref|YP_004808090.1| - 0.00072 19.0 2.3 0.32 10.3 0.1 3.1 2 1 1 3 3 3 1 AAA-like domain SMC_N PF02463.14 gi|345005237|ref|YP_004808090.1| - 0.00077 18.7 0.3 0.0036 16.5 0.2 1.8 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_25 PF13481.1 gi|345005237|ref|YP_004808090.1| - 0.0012 18.2 0.9 0.17 11.2 0.0 3.0 3 0 0 3 3 3 1 AAA domain AAA_29 PF13555.1 gi|345005237|ref|YP_004808090.1| - 0.0043 16.5 0.1 0.0076 15.7 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain DUF258 PF03193.11 gi|345005237|ref|YP_004808090.1| - 0.012 14.7 0.0 0.025 13.7 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_33 PF13671.1 gi|345005237|ref|YP_004808090.1| - 0.018 14.8 0.3 0.22 11.3 0.0 2.4 2 1 0 2 2 2 0 AAA domain Zeta_toxin PF06414.7 gi|345005237|ref|YP_004808090.1| - 0.069 12.2 0.0 0.14 11.2 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin NB-ARC PF00931.17 gi|345005237|ref|YP_004808090.1| - 0.074 11.8 0.1 0.15 10.8 0.1 1.4 1 0 0 1 1 1 0 NB-ARC domain ATP-synt_ab PF00006.20 gi|345005237|ref|YP_004808090.1| - 0.097 12.1 0.0 0.097 12.1 0.0 1.2 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_16 PF13191.1 gi|345005237|ref|YP_004808090.1| - 0.11 12.4 5.0 0.067 13.1 1.5 2.3 2 1 0 2 2 2 0 AAA ATPase domain AAA_15 PF13175.1 gi|345005237|ref|YP_004808090.1| - 0.16 10.9 0.0 1.3 8.0 0.0 1.9 2 0 0 2 2 2 0 AAA ATPase domain NACHT PF05729.7 gi|345005237|ref|YP_004808090.1| - 0.17 11.5 0.2 0.4 10.3 0.1 1.6 1 0 0 1 1 1 0 NACHT domain Septin PF00735.13 gi|345005237|ref|YP_004808090.1| - 0.18 10.8 0.0 0.28 10.1 0.0 1.2 1 0 0 1 1 1 0 Septin ABC_tran PF00005.22 gi|345005238|ref|YP_004808091.1| - 1.3e-30 106.5 0.0 1.8e-30 106.0 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|345005238|ref|YP_004808091.1| - 1.6e-20 73.1 0.5 3.7e-20 72.0 0.2 1.8 2 0 0 2 2 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|345005238|ref|YP_004808091.1| - 2.6e-09 37.4 0.5 8.8e-07 29.1 0.0 2.1 1 1 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|345005238|ref|YP_004808091.1| - 0.0012 18.9 0.2 0.002 18.1 0.1 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|345005238|ref|YP_004808091.1| - 0.0018 18.3 1.1 0.069 13.2 0.7 2.2 1 1 0 1 1 1 1 AAA domain AAA_10 PF12846.2 gi|345005238|ref|YP_004808091.1| - 0.005 16.3 0.1 0.088 12.2 0.0 2.1 1 1 0 2 2 2 1 AAA-like domain AAA_29 PF13555.1 gi|345005238|ref|YP_004808091.1| - 0.0058 16.1 0.1 0.011 15.2 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain NB-ARC PF00931.17 gi|345005238|ref|YP_004808091.1| - 0.011 14.6 0.1 0.018 13.9 0.1 1.3 1 0 0 1 1 1 0 NB-ARC domain AAA_25 PF13481.1 gi|345005238|ref|YP_004808091.1| - 0.011 15.1 0.0 0.045 13.1 0.0 2.0 2 0 0 2 2 2 0 AAA domain SMC_N PF02463.14 gi|345005238|ref|YP_004808091.1| - 0.018 14.3 0.0 0.037 13.2 0.0 1.5 1 1 0 1 1 1 0 RecF/RecN/SMC N terminal domain NACHT PF05729.7 gi|345005238|ref|YP_004808091.1| - 0.037 13.6 0.0 0.07 12.7 0.0 1.4 1 0 0 1 1 1 0 NACHT domain ATP-synt_ab PF00006.20 gi|345005238|ref|YP_004808091.1| - 0.051 13.0 0.0 0.051 13.0 0.0 1.2 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_5 PF07728.9 gi|345005238|ref|YP_004808091.1| - 0.061 13.0 0.0 0.12 12.1 0.0 1.5 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) MobB PF03205.9 gi|345005238|ref|YP_004808091.1| - 0.07 12.8 0.0 0.13 11.9 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B Chorein_N PF12624.2 gi|345005238|ref|YP_004808091.1| - 0.072 12.6 0.0 0.16 11.5 0.0 1.5 1 0 0 1 1 1 0 N-terminal region of Chorein, a TM vesicle-mediated sorter AAA_15 PF13175.1 gi|345005238|ref|YP_004808091.1| - 0.078 12.0 0.5 0.84 8.6 0.1 2.0 2 0 0 2 2 2 0 AAA ATPase domain Mg_chelatase PF01078.16 gi|345005238|ref|YP_004808091.1| - 0.096 11.8 0.0 0.16 11.1 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI Sigma54_activat PF00158.21 gi|345005238|ref|YP_004808091.1| - 0.12 11.8 0.1 0.24 10.8 0.0 1.5 1 0 0 1 1 1 0 Sigma-54 interaction domain DUF258 PF03193.11 gi|345005238|ref|YP_004808091.1| - 0.14 11.3 0.1 0.26 10.4 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 UPF0079 PF02367.12 gi|345005238|ref|YP_004808091.1| - 0.16 11.6 0.1 0.28 10.8 0.0 1.3 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 BPD_transp_1 PF00528.17 gi|345005239|ref|YP_004808092.1| - 2.2e-23 82.7 14.9 4.2e-23 81.8 8.2 2.1 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.2 gi|345005239|ref|YP_004808092.1| - 2.7e-10 39.4 0.0 2.7e-10 39.4 0.0 2.0 2 0 0 2 2 2 1 N-terminal TM domain of oligopeptide transport permease C BPD_transp_1 PF00528.17 gi|345005240|ref|YP_004808093.1| - 1.8e-34 118.8 17.7 3.1e-34 118.1 12.3 1.4 1 0 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component SBP_bac_5 PF00496.17 gi|345005241|ref|YP_004808094.1| - 6.2e-77 258.9 5.7 8.5e-77 258.4 3.2 1.6 2 0 0 2 2 2 1 Bacterial extracellular solute-binding proteins, family 5 Middle Peptidase_M24 PF00557.19 gi|345005242|ref|YP_004808095.1| - 1.3e-34 119.6 0.7 2.1e-34 118.9 0.5 1.3 1 0 0 1 1 1 1 Metallopeptidase family M24 Peptidase_M28 PF04389.12 gi|345005243|ref|YP_004808096.1| - 2.5e-20 72.9 0.6 5e-20 71.9 0.4 1.5 1 0 0 1 1 1 1 Peptidase family M28 PA PF02225.17 gi|345005243|ref|YP_004808096.1| - 1.2e-10 41.0 0.0 2.1e-10 40.1 0.0 1.5 1 0 0 1 1 1 1 PA domain Peptidase_C15 PF01470.12 gi|345005244|ref|YP_004808097.1| - 8.7e-61 205.3 0.0 1.1e-60 205.0 0.0 1.0 1 0 0 1 1 1 1 Pyroglutamyl peptidase MS_channel PF00924.13 gi|345005245|ref|YP_004808098.1| - 6.7e-35 120.3 0.2 8.6e-35 119.9 0.2 1.1 1 0 0 1 1 1 1 Mechanosensitive ion channel DUF4271 PF14093.1 gi|345005245|ref|YP_004808098.1| - 0.047 13.3 1.1 0.066 12.8 0.8 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4271) FA_desaturase PF00487.19 gi|345005245|ref|YP_004808098.1| - 0.2 11.0 4.7 0.3 10.4 3.2 1.2 1 0 0 1 1 1 0 Fatty acid desaturase TctB PF07331.6 gi|345005245|ref|YP_004808098.1| - 0.5 10.0 12.8 0.8 9.3 8.9 1.2 1 0 0 1 1 1 0 Tripartite tricarboxylate transporter TctB family YwiC PF14256.1 gi|345005245|ref|YP_004808098.1| - 0.54 10.3 7.1 0.94 9.5 4.9 1.3 1 0 0 1 1 1 0 YwiC-like protein YobH PF13996.1 gi|345005245|ref|YP_004808098.1| - 2 8.3 6.0 3 7.8 3.8 1.6 1 1 0 1 1 1 0 YobH-like protein DUF2171 PF09939.4 gi|345005247|ref|YP_004808100.1| - 0.09 12.8 0.7 0.35 10.9 0.5 1.8 1 1 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2171) PRC PF05239.11 gi|345005247|ref|YP_004808100.1| - 0.09 12.6 0.0 0.16 11.8 0.0 1.4 1 0 0 1 1 1 0 PRC-barrel domain NicO PF03824.11 gi|345005249|ref|YP_004808102.1| - 0.00033 20.0 0.7 0.00033 20.0 0.5 1.6 2 0 0 2 2 2 1 High-affinity nickel-transport protein HTH_10 PF04967.7 gi|345005250|ref|YP_004808103.1| - 5.9e-13 48.1 0.0 1.3e-12 47.0 0.0 1.6 1 0 0 1 1 1 1 HTH DNA binding domain HTH_24 PF13412.1 gi|345005250|ref|YP_004808103.1| - 0.00032 20.0 0.0 0.0006 19.1 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|345005250|ref|YP_004808103.1| - 0.00046 19.8 0.2 0.0019 17.8 0.0 2.2 2 0 0 2 2 2 1 MarR family HTH_3 PF01381.17 gi|345005250|ref|YP_004808103.1| - 0.00095 18.9 0.0 0.0037 17.0 0.0 2.0 2 0 0 2 2 2 1 Helix-turn-helix HTH_AsnC-type PF13404.1 gi|345005250|ref|YP_004808103.1| - 0.0064 16.0 1.7 0.01 15.3 0.1 2.1 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain Sigma70_r4 PF04545.11 gi|345005250|ref|YP_004808103.1| - 0.014 14.6 0.1 0.03 13.6 0.1 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_20 PF12840.2 gi|345005250|ref|YP_004808103.1| - 0.015 15.1 0.0 0.041 13.6 0.0 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain Phage_CI_repr PF07022.8 gi|345005250|ref|YP_004808103.1| - 0.028 14.5 0.0 0.095 12.7 0.0 1.8 1 0 0 1 1 1 0 Bacteriophage CI repressor helix-turn-helix domain HTH_Crp_2 PF13545.1 gi|345005250|ref|YP_004808103.1| - 0.067 12.9 0.0 0.13 12.0 0.0 1.5 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain TetR_N PF00440.18 gi|345005250|ref|YP_004808103.1| - 0.073 12.7 0.0 0.17 11.5 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory proteins, tetR family PSK_trans_fac PF07704.6 gi|345005250|ref|YP_004808103.1| - 0.083 13.5 1.0 0.66 10.6 0.1 2.3 2 0 0 2 2 2 0 Rv0623-like transcription factor HTH_11 PF08279.7 gi|345005250|ref|YP_004808103.1| - 0.11 12.1 0.0 0.24 11.0 0.0 1.6 1 0 0 1 1 1 0 HTH domain MFS_1 PF07690.11 gi|345005252|ref|YP_004808105.1| - 3e-53 180.7 69.5 6.9e-41 140.1 29.4 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_2 PF13347.1 gi|345005252|ref|YP_004808105.1| - 1.6e-08 33.3 19.5 3.4e-08 32.2 13.5 1.5 1 1 0 1 1 1 1 MFS/sugar transport protein UNC-93 PF05978.11 gi|345005252|ref|YP_004808105.1| - 0.0091 15.5 5.3 0.01 15.3 0.1 2.6 2 0 0 2 2 2 1 Ion channel regulatory protein UNC-93 ATG22 PF11700.3 gi|345005252|ref|YP_004808105.1| - 0.015 13.7 16.6 0.036 12.5 0.3 2.5 1 1 1 2 2 2 0 Vacuole effluxer Atg22 like DUF2484 PF10658.4 gi|345005252|ref|YP_004808105.1| - 7.4 6.7 14.1 0.066 13.3 2.4 3.1 3 0 0 3 3 3 0 Protein of unknown function (DUF2484) Amidohydro_4 PF13147.1 gi|345005253|ref|YP_004808106.1| - 2.7e-22 80.1 13.1 6.5e-22 78.8 9.1 1.7 1 1 0 1 1 1 1 Amidohydrolase Amidohydro_5 PF13594.1 gi|345005253|ref|YP_004808106.1| - 2.6e-14 52.7 0.8 7.9e-14 51.2 0.5 1.9 1 0 0 1 1 1 1 Amidohydrolase Amidohydro_1 PF01979.15 gi|345005253|ref|YP_004808106.1| - 2.8e-13 50.2 0.2 1.4e-09 38.0 0.0 2.3 2 0 0 2 2 2 2 Amidohydrolase family Amidohydro_3 PF07969.6 gi|345005253|ref|YP_004808106.1| - 5.6e-09 35.7 6.9 1.7e-06 27.5 1.3 3.1 2 1 0 2 2 2 2 Amidohydrolase family EF1_GNE PF00736.14 gi|345005254|ref|YP_004808107.1| - 0.11 12.2 0.2 0.42 10.3 0.2 2.1 1 1 0 1 1 1 0 EF-1 guanine nucleotide exchange domain THUMP PF02926.12 gi|345005255|ref|YP_004808108.1| - 1.1e-07 31.7 0.0 2e-07 30.9 0.0 1.4 1 0 0 1 1 1 1 THUMP domain DnaJ_CXXCXGXG PF00684.14 gi|345005255|ref|YP_004808108.1| - 0.00093 19.2 1.2 0.00093 19.2 0.8 2.4 3 0 0 3 3 3 1 DnaJ central domain RNase_HII PF01351.13 gi|345005256|ref|YP_004808109.1| - 2.2e-39 135.1 0.0 2.6e-39 134.9 0.0 1.0 1 0 0 1 1 1 1 Ribonuclease HII NUDIX PF00293.23 gi|345005257|ref|YP_004808110.1| - 6.3e-20 71.1 0.1 8.1e-20 70.8 0.1 1.1 1 0 0 1 1 1 1 NUDIX domain Nudix_N_2 PF14803.1 gi|345005257|ref|YP_004808110.1| - 0.00044 19.8 5.8 0.00087 18.9 4.0 1.5 1 0 0 1 1 1 1 Nudix N-terminal DZR PF12773.2 gi|345005257|ref|YP_004808110.1| - 0.0045 16.7 0.6 0.0075 16.0 0.4 1.3 1 0 0 1 1 1 1 Double zinc ribbon DUF1610 PF07754.6 gi|345005257|ref|YP_004808110.1| - 0.014 15.5 0.2 0.033 14.3 0.1 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF1610) zf-ribbon_3 PF13248.1 gi|345005257|ref|YP_004808110.1| - 0.29 10.3 2.6 0.65 9.2 1.8 1.6 1 1 0 1 1 1 0 zinc-ribbon domain SBP PF03110.9 gi|345005257|ref|YP_004808110.1| - 2 8.6 5.4 6.4 7.0 0.3 2.3 1 1 1 2 2 2 0 SBP domain DNA_binding_1 PF01035.15 gi|345005258|ref|YP_004808111.1| - 3.8e-22 77.8 0.0 8.1e-22 76.7 0.0 1.4 2 0 0 2 2 2 1 6-O-methylguanine DNA methyltransferase, DNA binding domain Nucleos_tra2_N PF01773.15 gi|345005259|ref|YP_004808112.1| - 0.0065 16.7 0.0 0.0096 16.2 0.0 1.3 1 0 0 1 1 1 1 Na+ dependent nucleoside transporter N-terminus FA_desaturase PF00487.19 gi|345005259|ref|YP_004808112.1| - 0.047 13.1 0.1 0.051 12.9 0.1 1.1 1 0 0 1 1 1 0 Fatty acid desaturase BCHF PF07284.6 gi|345005259|ref|YP_004808112.1| - 0.057 13.2 0.0 0.063 13.1 0.0 1.2 1 0 0 1 1 1 0 2-vinyl bacteriochlorophyllide hydratase (BCHF) Adeno_E3 PF06040.6 gi|345005259|ref|YP_004808112.1| - 0.11 12.3 0.3 0.23 11.4 0.0 1.7 1 1 1 2 2 2 0 Adenovirus E3 protein SecD_SecF PF02355.11 gi|345005260|ref|YP_004808113.1| - 2.8e-13 49.4 7.0 5.6e-13 48.4 4.8 1.4 1 0 0 1 1 1 1 Protein export membrane protein Sterol-sensing PF12349.3 gi|345005260|ref|YP_004808113.1| - 0.0012 18.3 2.2 0.0024 17.3 1.5 1.4 1 0 0 1 1 1 1 Sterol-sensing domain of SREBP cleavage-activation Sec_GG PF07549.9 gi|345005260|ref|YP_004808113.1| - 0.0061 15.7 0.0 0.02 14.0 0.0 1.9 1 0 0 1 1 1 1 SecD/SecF GG Motif DUF1824 PF08854.5 gi|345005260|ref|YP_004808113.1| - 0.077 12.6 0.1 0.15 11.7 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF1824) MMPL PF03176.10 gi|345005260|ref|YP_004808113.1| - 1.5 7.4 19.7 0.48 9.0 10.8 2.1 2 0 0 2 2 2 0 MMPL family SecD_SecF PF02355.11 gi|345005261|ref|YP_004808114.1| - 2.8e-30 104.9 13.0 4.5e-30 104.2 9.0 1.3 1 0 0 1 1 1 1 Protein export membrane protein TrkA_N PF02254.13 gi|345005261|ref|YP_004808114.1| - 0.015 15.2 0.0 0.028 14.4 0.0 1.4 1 0 0 1 1 1 0 TrkA-N domain TusA PF01206.12 gi|345005261|ref|YP_004808114.1| - 0.049 13.2 0.0 0.086 12.4 0.0 1.3 1 0 0 1 1 1 0 Sulfurtransferase TusA eIF-1a PF01176.14 gi|345005262|ref|YP_004808115.1| - 9.8e-25 85.7 0.2 1.2e-24 85.4 0.1 1.1 1 0 0 1 1 1 1 Translation initiation factor 1A / IF-1 E1-E2_ATPase PF00122.15 gi|345005263|ref|YP_004808116.1| - 0.0017 17.4 0.1 0.0021 17.1 0.1 1.0 1 0 0 1 1 1 1 E1-E2 ATPase TFIIIC_sub6 PF10419.4 gi|345005263|ref|YP_004808116.1| - 0.03 13.7 0.0 0.043 13.2 0.0 1.2 1 0 0 1 1 1 0 TFIIIC subunit DAO PF01266.19 gi|345005264|ref|YP_004808117.1| - 2.2e-25 89.3 0.0 3.2e-25 88.7 0.0 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase Mqo PF06039.10 gi|345005264|ref|YP_004808117.1| - 4.1e-19 68.1 0.0 1.1e-17 63.3 0.0 2.0 1 1 0 1 1 1 1 Malate:quinone oxidoreductase (Mqo) NAD_binding_9 PF13454.1 gi|345005264|ref|YP_004808117.1| - 0.00035 20.3 1.0 0.68 9.6 0.0 2.3 2 0 0 2 2 2 2 FAD-NAD(P)-binding NAD_binding_8 PF13450.1 gi|345005264|ref|YP_004808117.1| - 0.00071 19.5 0.0 0.0043 17.0 0.0 2.2 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Lycopene_cycl PF05834.7 gi|345005264|ref|YP_004808117.1| - 0.01 14.8 0.1 2.7 6.8 0.0 2.1 2 0 0 2 2 2 2 Lycopene cyclase protein Thi4 PF01946.12 gi|345005264|ref|YP_004808117.1| - 0.039 13.0 1.7 2 7.4 0.0 2.8 2 1 1 3 3 3 0 Thi4 family HI0933_like PF03486.9 gi|345005264|ref|YP_004808117.1| - 0.069 11.6 0.2 0.86 7.9 0.0 2.1 2 0 0 2 2 2 0 HI0933-like protein Peptidase_S8 PF00082.17 gi|345005265|ref|YP_004808118.1| - 2.6e-39 135.0 3.2 3.6e-39 134.5 2.2 1.2 1 0 0 1 1 1 1 Subtilase family TAT_signal PF10518.4 gi|345005265|ref|YP_004808118.1| - 0.023 14.6 1.7 0.023 14.6 1.2 3.1 3 0 0 3 3 3 0 TAT (twin-arginine translocation) pathway signal sequence PHO4 PF01384.15 gi|345005266|ref|YP_004808119.1| - 7.5e-55 185.8 32.5 7.5e-55 185.8 22.6 1.4 2 0 0 2 2 2 1 Phosphate transporter family SpoVS PF04232.7 gi|345005266|ref|YP_004808119.1| - 0.01 15.3 4.5 0.082 12.4 0.9 2.6 2 0 0 2 2 2 0 Stage V sporulation protein S (SpoVS) DUF2304 PF10066.4 gi|345005266|ref|YP_004808119.1| - 0.025 14.4 0.6 0.025 14.4 0.4 2.9 2 2 2 4 4 4 0 Uncharacterized conserved protein (DUF2304) Virul_fac_BrkB PF03631.10 gi|345005267|ref|YP_004808120.1| - 6e-49 166.7 22.3 7.3e-49 166.4 15.4 1.0 1 0 0 1 1 1 1 Virulence factor BrkB HTH_IclR PF09339.5 gi|345005271|ref|YP_004808124.1| - 1.2e-07 31.2 0.0 2.1e-07 30.4 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.2 gi|345005271|ref|YP_004808124.1| - 2.8e-07 30.0 0.0 3.7e-07 29.6 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|345005271|ref|YP_004808124.1| - 4.8e-07 29.0 0.0 1.1e-06 27.9 0.0 1.6 1 1 0 1 1 1 1 Winged helix-turn-helix DNA-binding Rrf2 PF02082.15 gi|345005271|ref|YP_004808124.1| - 6.8e-06 26.1 0.0 9.3e-06 25.6 0.0 1.1 1 0 0 1 1 1 1 Transcriptional regulator HTH_Crp_2 PF13545.1 gi|345005271|ref|YP_004808124.1| - 6.9e-05 22.5 0.0 0.0001 21.9 0.0 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain Fe_dep_repress PF01325.14 gi|345005271|ref|YP_004808124.1| - 0.00015 21.6 0.0 0.00022 21.0 0.0 1.3 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_27 PF13463.1 gi|345005271|ref|YP_004808124.1| - 0.00026 21.2 0.0 0.00042 20.5 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_5 PF01022.15 gi|345005271|ref|YP_004808124.1| - 0.00027 20.5 0.0 0.00044 19.8 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|345005271|ref|YP_004808124.1| - 0.00046 19.9 0.0 0.00066 19.4 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.14 gi|345005271|ref|YP_004808124.1| - 0.00088 18.9 0.0 0.0016 18.0 0.0 1.4 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB TFIIE_alpha PF02002.12 gi|345005271|ref|YP_004808124.1| - 0.0013 18.2 0.0 0.0016 17.9 0.0 1.3 1 0 0 1 1 1 1 TFIIE alpha subunit MarR PF01047.17 gi|345005271|ref|YP_004808124.1| - 0.0015 18.2 0.0 0.0022 17.6 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_36 PF13730.1 gi|345005271|ref|YP_004808124.1| - 0.0028 17.7 0.0 0.0042 17.1 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain LexA_DNA_bind PF01726.11 gi|345005271|ref|YP_004808124.1| - 0.0034 16.9 0.0 0.0053 16.2 0.0 1.3 1 0 0 1 1 1 1 LexA DNA binding domain Sulfolobus_pRN PF05584.6 gi|345005271|ref|YP_004808124.1| - 0.0053 16.6 0.0 0.015 15.2 0.0 1.6 2 0 0 2 2 2 1 Sulfolobus plasmid regulatory protein HTH_23 PF13384.1 gi|345005271|ref|YP_004808124.1| - 0.0055 16.3 0.0 0.0099 15.5 0.0 1.4 1 0 0 1 1 1 1 Homeodomain-like domain Crp PF00325.15 gi|345005271|ref|YP_004808124.1| - 0.0067 15.8 0.0 0.01 15.2 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, crp family GntR PF00392.16 gi|345005271|ref|YP_004808124.1| - 0.011 15.1 0.0 0.018 14.4 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_38 PF13936.1 gi|345005271|ref|YP_004808124.1| - 0.012 15.1 0.0 0.022 14.3 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain Penicillinase_R PF03965.11 gi|345005271|ref|YP_004808124.1| - 0.017 15.2 0.0 0.027 14.5 0.0 1.4 1 1 0 1 1 1 0 Penicillinase repressor HTH_11 PF08279.7 gi|345005271|ref|YP_004808124.1| - 0.018 14.7 0.0 0.025 14.2 0.0 1.2 1 0 0 1 1 1 0 HTH domain RepL PF05732.6 gi|345005271|ref|YP_004808124.1| - 0.028 13.6 0.0 0.03 13.5 0.0 1.2 1 0 0 1 1 1 0 Firmicute plasmid replication protein (RepL) DUF2336 PF10098.4 gi|345005271|ref|YP_004808124.1| - 0.041 13.1 0.1 0.062 12.5 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2336) RPA_C PF08784.6 gi|345005271|ref|YP_004808124.1| - 0.046 14.1 0.0 0.066 13.6 0.0 1.2 1 0 0 1 1 1 0 Replication protein A C terminal HTH_AsnC-type PF13404.1 gi|345005271|ref|YP_004808124.1| - 0.065 12.7 0.0 0.15 11.5 0.0 1.7 1 1 0 1 1 1 0 AsnC-type helix-turn-helix domain HrcA_DNA-bdg PF03444.10 gi|345005271|ref|YP_004808124.1| - 0.071 12.5 0.0 0.11 11.9 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding HTH_28 PF13518.1 gi|345005271|ref|YP_004808124.1| - 0.1 12.6 0.0 0.15 12.0 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain Sigma70_r4_2 PF08281.7 gi|345005271|ref|YP_004808124.1| - 0.11 12.0 0.0 0.16 11.4 0.0 1.3 1 0 0 1 1 1 0 Sigma-70, region 4 Arch_ATPase PF01637.13 gi|345005272|ref|YP_004808125.1| - 5.6e-32 111.3 0.0 1.1e-31 110.3 0.0 1.5 1 1 0 1 1 1 1 Archaeal ATPase DUF234 PF03008.9 gi|345005272|ref|YP_004808125.1| - 5.2e-16 58.6 0.0 1.3e-15 57.3 0.0 1.6 1 0 0 1 1 1 1 Archaea bacterial proteins of unknown function AAA_22 PF13401.1 gi|345005272|ref|YP_004808125.1| - 1.9e-06 28.0 0.0 4.8e-06 26.7 0.0 1.6 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|345005272|ref|YP_004808125.1| - 5.1e-06 26.6 0.7 1.5e-05 25.0 0.5 1.7 1 1 0 1 1 1 1 AAA ATPase domain TFIIE_alpha PF02002.12 gi|345005272|ref|YP_004808125.1| - 0.00062 19.2 0.0 0.0016 17.9 0.0 1.6 1 0 0 1 1 1 1 TFIIE alpha subunit AAA_14 PF13173.1 gi|345005272|ref|YP_004808125.1| - 0.00072 19.4 0.0 0.0013 18.6 0.0 1.4 1 0 0 1 1 1 1 AAA domain HTH_45 PF14947.1 gi|345005272|ref|YP_004808125.1| - 0.0021 17.8 0.0 0.0049 16.6 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_IclR PF09339.5 gi|345005272|ref|YP_004808125.1| - 0.041 13.4 0.1 0.13 11.8 0.0 1.9 2 0 0 2 2 2 0 IclR helix-turn-helix domain MarR_2 PF12802.2 gi|345005272|ref|YP_004808125.1| - 0.079 12.6 0.0 0.21 11.3 0.0 1.7 1 0 0 1 1 1 0 MarR family HTH_20 PF12840.2 gi|345005273|ref|YP_004808126.1| - 1.1e-13 50.7 0.1 1.6e-13 50.2 0.1 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|345005273|ref|YP_004808126.1| - 1.5e-10 40.5 0.0 2.2e-10 40.0 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.2 gi|345005273|ref|YP_004808126.1| - 4.1e-09 35.9 0.0 6.4e-09 35.3 0.0 1.2 1 0 0 1 1 1 1 MarR family TrmB PF01978.14 gi|345005273|ref|YP_004808126.1| - 1.7e-07 30.8 0.1 2.4e-07 30.3 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.17 gi|345005273|ref|YP_004808126.1| - 1.8e-07 30.7 0.0 2.9e-07 30.0 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|345005273|ref|YP_004808126.1| - 1.2e-06 27.7 0.0 1.7e-06 27.3 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_27 PF13463.1 gi|345005273|ref|YP_004808126.1| - 2.7e-06 27.6 0.1 4.1e-06 27.0 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain TFIIE_alpha PF02002.12 gi|345005273|ref|YP_004808126.1| - 1.8e-05 24.2 0.0 2.3e-05 23.8 0.0 1.1 1 0 0 1 1 1 1 TFIIE alpha subunit B-block_TFIIIC PF04182.7 gi|345005273|ref|YP_004808126.1| - 2e-05 24.3 0.0 2.8e-05 23.8 0.0 1.3 1 0 0 1 1 1 1 B-block binding subunit of TFIIIC HTH_34 PF13601.1 gi|345005273|ref|YP_004808126.1| - 0.0001 22.2 0.0 0.00016 21.6 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_IclR PF09339.5 gi|345005273|ref|YP_004808126.1| - 0.00027 20.4 0.0 0.00043 19.8 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_45 PF14947.1 gi|345005273|ref|YP_004808126.1| - 0.00056 19.6 0.0 0.0009 19.0 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix PadR PF03551.9 gi|345005273|ref|YP_004808126.1| - 0.0012 18.5 1.5 0.016 14.9 0.2 2.1 1 1 1 2 2 2 1 Transcriptional regulator PadR-like family HxlR PF01638.12 gi|345005273|ref|YP_004808126.1| - 0.011 15.3 0.0 0.019 14.5 0.0 1.5 1 1 0 1 1 1 0 HxlR-like helix-turn-helix CLU_N PF15044.1 gi|345005273|ref|YP_004808126.1| - 0.053 13.6 0.0 0.09 12.9 0.0 1.5 1 1 0 1 1 1 0 Mitochondrial function, CLU-N-term Tn7_Tnp_TnsA_C PF08721.6 gi|345005273|ref|YP_004808126.1| - 0.064 13.2 0.0 0.088 12.8 0.0 1.4 1 1 0 1 1 1 0 TnsA endonuclease C terminal Mga PF05043.8 gi|345005273|ref|YP_004808126.1| - 0.096 12.9 0.0 0.14 12.4 0.0 1.2 1 0 0 1 1 1 0 Mga helix-turn-helix domain DUF2250 PF10007.4 gi|345005273|ref|YP_004808126.1| - 0.2 11.5 1.1 1.4 8.8 0.7 2.0 1 1 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) Arch_fla_DE PF04659.8 gi|345005274|ref|YP_004808127.1| - 0.04 13.7 0.6 0.24 11.2 0.0 2.4 2 1 1 3 3 3 0 Archaeal flagella protein Ycf1 PF05758.7 gi|345005274|ref|YP_004808127.1| - 0.047 11.4 1.6 0.057 11.1 1.1 1.1 1 0 0 1 1 1 0 Ycf1 DUF1707 PF08044.6 gi|345005274|ref|YP_004808127.1| - 0.049 13.3 0.3 0.27 10.9 0.1 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF1707) Flg_hook PF02120.11 gi|345005274|ref|YP_004808127.1| - 0.25 11.0 5.8 15 5.3 0.0 3.9 4 1 1 5 5 5 0 Flagellar hook-length control protein FliK PSRP-3_Ycf65 PF04839.8 gi|345005274|ref|YP_004808127.1| - 6 7.0 9.3 1.3 9.1 0.6 3.4 3 1 0 3 3 3 0 Plastid and cyanobacterial ribosomal protein (PSRP-3 / Ycf65) TFIIB PF00382.14 gi|345005276|ref|YP_004808129.1| - 4.1e-18 64.9 6.3 1.5e-14 53.5 1.7 2.4 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.7 gi|345005276|ref|YP_004808129.1| - 0.0011 18.2 8.7 0.0039 16.4 5.6 2.2 1 1 1 2 2 2 2 TFIIB zinc-binding Ribosomal_L32p PF01783.18 gi|345005276|ref|YP_004808129.1| - 0.053 13.7 3.7 0.12 12.5 1.2 2.6 2 0 0 2 2 2 0 Ribosomal L32p protein family Cytochrom_C552 PF02335.10 gi|345005276|ref|YP_004808129.1| - 0.057 12.1 0.8 0.076 11.6 0.5 1.2 1 0 0 1 1 1 0 Cytochrome c552 zinc-ribbons_6 PF07191.7 gi|345005276|ref|YP_004808129.1| - 0.12 12.2 1.6 0.29 10.9 1.1 1.7 1 0 0 1 1 1 0 zinc-ribbons DUF4140 PF13600.1 gi|345005277|ref|YP_004808130.1| - 0.47 10.9 12.3 4.4 7.8 3.9 2.6 1 1 1 2 2 2 0 N-terminal domain of unknown function (DUF4140) DUF4407 PF14362.1 gi|345005277|ref|YP_004808130.1| - 0.93 8.3 10.1 1.3 7.8 7.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) V_ATPase_I PF01496.14 gi|345005277|ref|YP_004808130.1| - 2.8 5.7 7.1 27 2.4 6.0 1.7 2 0 0 2 2 2 0 V-type ATPase 116kDa subunit family APG6 PF04111.7 gi|345005277|ref|YP_004808130.1| - 8.9 5.2 13.3 14 4.6 9.2 1.2 1 0 0 1 1 1 0 Autophagy protein Apg6 UPF0029 PF01205.14 gi|345005278|ref|YP_004808131.1| - 0.091 12.4 0.0 0.14 11.8 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized protein family UPF0029 PLDc_2 PF13091.1 gi|345005279|ref|YP_004808132.1| - 3.3e-13 49.4 0.0 7.1e-13 48.3 0.0 1.6 1 1 0 1 1 1 1 PLD-like domain PLDc PF00614.17 gi|345005279|ref|YP_004808132.1| - 0.0087 15.8 0.0 0.022 14.5 0.0 1.6 1 0 0 1 1 1 1 Phospholipase D Active site motif RE_NgoFVII PF09565.5 gi|345005279|ref|YP_004808132.1| - 0.099 11.5 0.0 0.31 9.9 0.0 1.8 1 1 0 1 1 1 0 NgoFVII restriction endonuclease DS PF01916.12 gi|345005280|ref|YP_004808133.1| - 1e-75 254.6 0.0 3.4e-75 252.9 0.0 1.7 1 1 0 1 1 1 1 Deoxyhypusine synthase EamA PF00892.15 gi|345005281|ref|YP_004808134.1| - 0.039 13.9 1.5 0.054 13.5 1.1 1.2 1 0 0 1 1 1 0 EamA-like transporter family NIF3 PF01784.13 gi|345005282|ref|YP_004808135.1| - 2e-56 191.2 0.0 2.5e-56 190.9 0.0 1.0 1 0 0 1 1 1 1 NIF3 (NGG1p interacting factor 3) AP_endonuc_2 PF01261.19 gi|345005282|ref|YP_004808135.1| - 0.00077 18.8 1.5 0.0088 15.3 0.1 2.3 2 1 0 2 2 2 1 Xylose isomerase-like TIM barrel Usp PF00582.21 gi|345005282|ref|YP_004808135.1| - 0.002 18.3 0.7 1.1 9.4 0.1 2.4 2 0 0 2 2 2 2 Universal stress protein family Glyoxalase_4 PF13669.1 gi|345005282|ref|YP_004808135.1| - 0.0033 17.4 0.8 0.012 15.6 0.1 2.3 2 1 1 3 3 3 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Arginase PF00491.16 gi|345005283|ref|YP_004808136.1| - 3.4e-54 184.0 2.1 4e-54 183.7 1.4 1.1 1 0 0 1 1 1 1 Arginase family Surf_Ag_VNR PF07244.10 gi|345005283|ref|YP_004808136.1| - 0.11 12.8 0.0 0.4 11.1 0.0 1.8 2 0 0 2 2 2 0 Surface antigen variable number repeat eIF-5a PF01287.15 gi|345005284|ref|YP_004808137.1| - 4.6e-06 26.4 0.2 1.1e-05 25.2 0.1 1.7 1 1 0 1 1 1 1 Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold EFP_N PF08207.7 gi|345005284|ref|YP_004808137.1| - 0.064 13.1 0.0 0.65 9.9 0.0 2.1 2 0 0 2 2 2 0 Elongation factor P (EF-P) KOW-like domain GCV_T PF01571.16 gi|345005285|ref|YP_004808138.1| - 1.1e-64 217.6 0.0 1.5e-64 217.2 0.0 1.2 1 0 0 1 1 1 1 Aminomethyltransferase folate-binding domain GCV_T_C PF08669.6 gi|345005285|ref|YP_004808138.1| - 3.8e-24 84.5 0.2 6.3e-24 83.8 0.1 1.3 1 0 0 1 1 1 1 Glycine cleavage T-protein C-terminal barrel domain SoxG PF04268.7 gi|345005285|ref|YP_004808138.1| - 0.0083 15.9 0.1 2.4 7.9 0.0 2.3 2 0 0 2 2 2 2 Sarcosine oxidase, gamma subunit family TrmE_N PF10396.4 gi|345005285|ref|YP_004808138.1| - 0.012 15.5 0.0 0.085 12.8 0.0 2.1 2 0 0 2 2 2 0 GTP-binding protein TrmE N-terminus GCV_H PF01597.14 gi|345005286|ref|YP_004808139.1| - 8.3e-44 148.1 0.0 9.1e-44 148.0 0.0 1.0 1 0 0 1 1 1 1 Glycine cleavage H-protein Biotin_lipoyl PF00364.17 gi|345005286|ref|YP_004808139.1| - 0.0046 16.5 0.0 0.007 15.9 0.0 1.2 1 0 0 1 1 1 1 Biotin-requiring enzyme RnfC_N PF13375.1 gi|345005286|ref|YP_004808139.1| - 0.13 12.0 0.0 0.18 11.5 0.0 1.2 1 0 0 1 1 1 0 RnfC Barrel sandwich hybrid domain GDC-P PF02347.11 gi|345005287|ref|YP_004808140.1| - 3.9e-106 355.3 0.0 4.6e-106 355.0 0.0 1.0 1 0 0 1 1 1 1 Glycine cleavage system P-protein Cys_Met_Meta_PP PF01053.15 gi|345005287|ref|YP_004808140.1| - 0.00024 19.5 0.0 0.00037 18.9 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme GDC-P PF02347.11 gi|345005288|ref|YP_004808141.1| - 2.8e-09 36.1 0.0 6.4e-08 31.7 0.0 2.0 1 1 0 1 1 1 1 Glycine cleavage system P-protein Aminotran_5 PF00266.14 gi|345005288|ref|YP_004808141.1| - 2.9e-09 36.1 0.1 5.5e-09 35.2 0.0 1.4 2 0 0 2 2 2 1 Aminotransferase class-V Beta_elim_lyase PF01212.16 gi|345005288|ref|YP_004808141.1| - 0.0034 16.5 0.0 0.0054 15.9 0.0 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase Aminotran_1_2 PF00155.16 gi|345005288|ref|YP_004808141.1| - 0.027 13.4 0.0 0.037 12.9 0.0 1.2 1 0 0 1 1 1 0 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.12 gi|345005288|ref|YP_004808141.1| - 0.039 12.9 0.1 0.07 12.1 0.1 1.4 1 0 0 1 1 1 0 DegT/DnrJ/EryC1/StrS aminotransferase family Zn_Tnp_IS1595 PF12760.2 gi|345005290|ref|YP_004808143.1| - 1.7e-05 24.5 1.2 1.9e-05 24.3 0.8 1.1 1 0 0 1 1 1 1 Transposase zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|345005290|ref|YP_004808143.1| - 0.0015 18.4 0.4 0.55 10.2 0.0 2.1 2 0 0 2 2 2 2 Zinc ribbon domain zf-H2C2_2 PF13465.1 gi|345005290|ref|YP_004808143.1| - 0.0067 16.6 0.8 0.61 10.4 0.1 2.1 2 0 0 2 2 2 1 Zinc-finger double domain zf-ribbon_3 PF13248.1 gi|345005290|ref|YP_004808143.1| - 0.0077 15.4 0.9 0.054 12.7 0.2 2.0 2 0 0 2 2 2 1 zinc-ribbon domain TerY-C PF15616.1 gi|345005290|ref|YP_004808143.1| - 0.015 15.2 0.1 0.015 15.2 0.1 1.1 1 0 0 1 1 1 0 TerY-C metal binding domain Lar_restr_allev PF14354.1 gi|345005290|ref|YP_004808143.1| - 0.026 14.8 0.2 0.028 14.7 0.1 1.1 1 0 0 1 1 1 0 Restriction alleviation protein Lar zf-ISL3 PF14690.1 gi|345005290|ref|YP_004808143.1| - 0.031 14.2 2.6 1.7 8.7 0.4 2.3 1 1 2 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-C2H2 PF00096.21 gi|345005290|ref|YP_004808143.1| - 0.054 13.8 1.0 3.9 7.9 0.1 2.2 2 0 0 2 2 2 0 Zinc finger, C2H2 type Ogr_Delta PF04606.7 gi|345005290|ref|YP_004808143.1| - 0.055 13.1 0.8 0.079 12.6 0.6 1.3 1 1 0 1 1 1 0 Ogr/Delta-like zinc finger zf-C2H2_3 PF13878.1 gi|345005290|ref|YP_004808143.1| - 0.092 12.3 1.1 4.7 6.8 0.0 2.1 2 0 0 2 2 2 0 zinc-finger of acetyl-transferase ESCO zf-IS66 PF13005.2 gi|345005290|ref|YP_004808143.1| - 0.097 12.6 0.4 1.5 8.8 0.1 2.1 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 zf-DNA_Pol PF08996.5 gi|345005290|ref|YP_004808143.1| - 0.11 11.8 0.2 0.11 11.8 0.2 1.0 1 0 0 1 1 1 0 DNA Polymerase alpha zinc finger DZR PF12773.2 gi|345005290|ref|YP_004808143.1| - 0.12 12.2 1.9 0.2 11.4 1.3 1.5 1 1 0 1 1 1 0 Double zinc ribbon TFIIS_C PF01096.13 gi|345005290|ref|YP_004808143.1| - 0.12 11.9 4.4 2 8.1 0.1 2.1 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) DUF2310 PF10071.4 gi|345005290|ref|YP_004808143.1| - 0.13 11.2 1.0 0.13 11.1 0.7 1.1 1 0 0 1 1 1 0 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) FYDLN_acid PF09538.5 gi|345005290|ref|YP_004808143.1| - 0.13 12.8 0.7 13 6.3 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (FYDLN_acid) zinc_ribbon_5 PF13719.1 gi|345005290|ref|YP_004808143.1| - 0.15 11.6 2.3 5.9 6.5 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|345005290|ref|YP_004808143.1| - 0.16 11.7 1.8 6.7 6.4 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain DnaJ_CXXCXGXG PF00684.14 gi|345005290|ref|YP_004808143.1| - 0.21 11.6 1.4 0.31 11.1 1.0 1.3 1 1 0 1 1 1 0 DnaJ central domain ADK_lid PF05191.9 gi|345005290|ref|YP_004808143.1| - 0.25 11.0 2.5 3 7.5 0.4 2.1 2 0 0 2 2 2 0 Adenylate kinase, active site lid zf-RING_3 PF14369.1 gi|345005290|ref|YP_004808143.1| - 0.39 10.7 2.7 3.3 7.7 0.4 2.2 1 1 1 2 2 2 0 zinc-finger zf-RanBP PF00641.13 gi|345005290|ref|YP_004808143.1| - 0.39 9.8 3.4 9.6 5.4 0.7 2.2 2 0 0 2 2 2 0 Zn-finger in Ran binding protein and others Zn_Tnp_IS91 PF14319.1 gi|345005290|ref|YP_004808143.1| - 1.3 8.5 4.3 4.5 6.8 0.5 2.0 1 1 1 2 2 2 0 Transposase zinc-binding domain OrfB_Zn_ribbon PF07282.6 gi|345005290|ref|YP_004808143.1| - 1.4 8.6 4.3 3.8 7.2 3.0 1.7 1 1 0 1 1 1 0 Putative transposase DNA-binding domain GST_N_3 PF13417.1 gi|345005291|ref|YP_004808144.1| - 2.3e-14 53.3 0.0 2.5e-14 53.2 0.0 1.0 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain Glutaredoxin PF00462.19 gi|345005291|ref|YP_004808144.1| - 1.6e-13 50.4 0.0 1.9e-13 50.1 0.0 1.1 1 0 0 1 1 1 1 Glutaredoxin GST_N_2 PF13409.1 gi|345005291|ref|YP_004808144.1| - 2.2e-12 46.7 0.0 2.5e-12 46.5 0.0 1.0 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_N PF02798.15 gi|345005291|ref|YP_004808144.1| - 0.0005 20.1 0.0 0.00057 20.0 0.0 1.1 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain DUF836 PF05768.9 gi|345005291|ref|YP_004808144.1| - 0.0018 18.4 0.0 0.0021 18.3 0.0 1.2 1 0 0 1 1 1 1 Glutaredoxin-like domain (DUF836) Memo PF01875.12 gi|345005291|ref|YP_004808144.1| - 0.071 11.9 0.0 0.083 11.7 0.0 1.0 1 0 0 1 1 1 0 Memo-like protein Cob_adeno_trans PF01923.13 gi|345005292|ref|YP_004808145.1| - 7.5e-58 194.9 0.1 8.4e-58 194.7 0.1 1.0 1 0 0 1 1 1 1 Cobalamin adenosyltransferase UPRTase PF14681.1 gi|345005292|ref|YP_004808145.1| - 0.14 11.2 0.0 0.53 9.4 0.0 1.8 1 1 1 2 2 2 0 Uracil phosphoribosyltransferase DUF1470 PF07336.6 gi|345005292|ref|YP_004808145.1| - 9.2 6.6 15.0 18 5.6 7.1 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF1470) AcylCoA_dehyd_C PF12186.3 gi|345005293|ref|YP_004808146.1| - 0.0012 18.6 0.2 0.0048 16.7 0.1 1.8 1 1 1 2 2 2 1 Acyl-CoA dehydrogenase C terminal PilJ PF13675.1 gi|345005293|ref|YP_004808146.1| - 0.0048 17.1 0.7 0.0075 16.5 0.5 1.4 1 1 0 1 1 1 1 Type IV pili methyl-accepting chemotaxis transducer N-term Exonuc_VII_L PF02601.10 gi|345005293|ref|YP_004808146.1| - 0.005 16.0 0.7 0.005 16.0 0.5 1.0 1 0 0 1 1 1 1 Exonuclease VII, large subunit Spc7 PF08317.6 gi|345005293|ref|YP_004808146.1| - 0.009 14.7 0.5 0.01 14.5 0.3 1.0 1 0 0 1 1 1 1 Spc7 kinetochore protein Apolipoprotein PF01442.13 gi|345005293|ref|YP_004808146.1| - 0.009 15.5 4.7 0.011 15.2 3.2 1.1 1 0 0 1 1 1 1 Apolipoprotein A1/A4/E domain I_LWEQ PF01608.12 gi|345005293|ref|YP_004808146.1| - 0.052 13.4 0.6 0.064 13.2 0.4 1.1 1 0 0 1 1 1 0 I/LWEQ domain GAS PF13851.1 gi|345005293|ref|YP_004808146.1| - 0.053 12.7 1.8 0.06 12.5 1.2 1.1 1 0 0 1 1 1 0 Growth-arrest specific micro-tubule binding Phage_GP20 PF06810.6 gi|345005293|ref|YP_004808146.1| - 0.06 12.7 0.2 0.073 12.5 0.2 1.1 1 0 0 1 1 1 0 Phage minor structural protein GP20 Syntaxin PF00804.20 gi|345005293|ref|YP_004808146.1| - 0.086 13.0 0.1 0.11 12.7 0.1 1.3 1 0 0 1 1 1 0 Syntaxin DUF883 PF05957.8 gi|345005293|ref|YP_004808146.1| - 0.093 13.1 5.6 0.55 10.6 1.3 2.1 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF883) IncA PF04156.9 gi|345005293|ref|YP_004808146.1| - 0.1 12.2 3.6 0.12 11.9 2.5 1.2 1 0 0 1 1 1 0 IncA protein BLOC1_2 PF10046.4 gi|345005293|ref|YP_004808146.1| - 0.1 12.7 0.0 0.14 12.2 0.0 1.2 1 0 0 1 1 1 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Atg14 PF10186.4 gi|345005293|ref|YP_004808146.1| - 0.11 11.4 0.5 0.13 11.1 0.4 1.0 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 TPR_2 PF07719.12 gi|345005293|ref|YP_004808146.1| - 0.15 12.0 0.6 5.2 7.2 0.1 2.3 2 0 0 2 2 2 0 Tetratricopeptide repeat HSCB_C PF07743.8 gi|345005293|ref|YP_004808146.1| - 0.51 10.8 4.5 0.55 10.7 1.3 2.0 1 1 1 2 2 2 0 HSCB C-terminal oligomerisation domain Prefoldin_2 PF01920.15 gi|345005293|ref|YP_004808146.1| - 0.85 9.4 5.0 8 6.2 3.0 2.1 1 1 1 2 2 2 0 Prefoldin subunit DUF3782 PF12644.2 gi|345005293|ref|YP_004808146.1| - 4.3 7.2 6.1 21 4.9 4.2 2.0 1 1 0 1 1 1 0 Protein of unknown function (DUF3782) HATPase_c PF02518.21 gi|345005294|ref|YP_004808147.1| - 2.6e-14 52.8 0.1 5.6e-14 51.8 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_5 PF14501.1 gi|345005294|ref|YP_004808147.1| - 2.5e-07 30.2 0.0 4.4e-07 29.5 0.0 1.4 1 0 0 1 1 1 1 GHKL domain SPOB_a PF14689.1 gi|345005294|ref|YP_004808147.1| - 0.013 15.0 0.3 0.024 14.2 0.2 1.4 1 0 0 1 1 1 0 Sensor_kinase_SpoOB-type, alpha-helical domain HATPase_c_2 PF13581.1 gi|345005294|ref|YP_004808147.1| - 0.019 14.7 0.0 0.037 13.8 0.0 1.4 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain TPP1 PF10341.4 gi|345005294|ref|YP_004808147.1| - 0.13 12.2 0.0 0.36 10.8 0.0 1.7 2 0 0 2 2 2 0 Shelterin complex subunit, TPP1/ACD tRNA_SAD PF07973.9 gi|345005295|ref|YP_004808148.1| - 1.9e-12 46.8 0.1 3e-12 46.1 0.1 1.3 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain tRNA-synt_2c PF01411.14 gi|345005295|ref|YP_004808148.1| - 1.9e-11 43.0 0.0 2.8e-11 42.4 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class II (A) DHHA1 PF02272.14 gi|345005295|ref|YP_004808148.1| - 0.00089 18.9 2.7 0.00089 18.9 1.8 2.0 2 0 0 2 2 2 1 DHHA1 domain HALZ PF02183.13 gi|345005295|ref|YP_004808148.1| - 0.3 10.8 1.8 0.28 10.9 0.3 1.7 2 0 0 2 2 2 0 Homeobox associated leucine zipper Acyl-CoA_dh_1 PF00441.19 gi|345005296|ref|YP_004808149.1| - 8.1e-55 185.0 2.6 1.2e-54 184.5 1.8 1.2 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.11 gi|345005296|ref|YP_004808149.1| - 6.3e-31 107.2 1.3 2e-30 105.6 0.2 2.3 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_2 PF08028.6 gi|345005296|ref|YP_004808149.1| - 5.8e-26 91.3 1.3 5.8e-26 91.3 0.9 1.8 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_M PF02770.14 gi|345005296|ref|YP_004808149.1| - 8.6e-21 73.2 0.0 2e-20 72.0 0.0 1.7 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain DUF2891 PF11199.3 gi|345005297|ref|YP_004808150.1| - 1e-104 349.6 0.2 1.2e-104 349.4 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF2891) HAD_2 PF13419.1 gi|345005298|ref|YP_004808151.1| - 5.3e-15 56.0 0.0 1.8e-13 51.0 0.0 2.0 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|345005298|ref|YP_004808151.1| - 1.1e-05 25.9 0.7 0.00015 22.2 0.1 2.0 1 1 1 2 2 2 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|345005298|ref|YP_004808151.1| - 0.0014 18.3 0.0 0.0026 17.4 0.0 1.5 1 0 0 1 1 1 1 HAD-hyrolase-like HAD PF12710.2 gi|345005298|ref|YP_004808151.1| - 0.033 14.3 0.0 0.041 14.0 0.0 1.2 1 0 0 1 1 1 0 haloacid dehalogenase-like hydrolase AA_permease PF00324.16 gi|345005299|ref|YP_004808152.1| - 0.0092 14.3 0.0 0.01 14.2 0.0 1.0 1 0 0 1 1 1 1 Amino acid permease SbmA_BacA PF05992.7 gi|345005299|ref|YP_004808152.1| - 0.14 11.3 0.4 0.15 11.1 0.3 1.0 1 0 0 1 1 1 0 SbmA/BacA-like family RseC_MucC PF04246.7 gi|345005299|ref|YP_004808152.1| - 0.14 11.7 0.1 0.17 11.4 0.0 1.1 1 0 0 1 1 1 0 Positive regulator of sigma(E), RseC/MucC PsbN PF02468.10 gi|345005299|ref|YP_004808152.1| - 0.34 10.5 3.5 2.2 7.9 0.1 2.1 2 0 0 2 2 2 0 Photosystem II reaction centre N protein (psbN) Abhydrolase_6 PF12697.2 gi|345005300|ref|YP_004808153.1| - 4.8e-34 118.2 2.8 5.5e-34 118.0 2.0 1.0 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_5 PF12695.2 gi|345005300|ref|YP_004808153.1| - 9e-16 57.9 0.1 2.9e-15 56.3 0.1 1.7 1 1 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|345005300|ref|YP_004808153.1| - 6.3e-13 48.8 0.4 8.9e-09 35.2 0.0 2.1 1 1 1 2 2 2 2 alpha/beta hydrolase fold Abhydrolase_4 PF08386.5 gi|345005300|ref|YP_004808153.1| - 6.1e-05 22.8 0.1 0.00014 21.7 0.0 1.6 2 0 0 2 2 2 1 TAP-like protein Thioesterase PF00975.15 gi|345005300|ref|YP_004808153.1| - 0.00029 21.1 0.0 0.00039 20.7 0.0 1.5 1 1 0 1 1 1 1 Thioesterase domain Abhydrolase_3 PF07859.8 gi|345005300|ref|YP_004808153.1| - 0.0099 15.4 0.4 0.025 14.1 0.3 1.7 1 1 0 1 1 1 1 alpha/beta hydrolase fold FSH1 PF03959.8 gi|345005300|ref|YP_004808153.1| - 0.027 13.9 0.1 1.6 8.1 0.0 2.8 2 1 1 3 3 3 0 Serine hydrolase (FSH1) DLH PF01738.13 gi|345005300|ref|YP_004808153.1| - 0.092 12.0 0.1 9.3 5.4 0.0 2.4 1 1 1 2 2 2 0 Dienelactone hydrolase family Esterase PF00756.15 gi|345005300|ref|YP_004808153.1| - 0.18 11.2 0.1 0.38 10.1 0.1 1.5 1 1 0 1 1 1 0 Putative esterase HSP20 PF00011.16 gi|345005301|ref|YP_004808154.1| - 0.014 15.2 1.2 1.5 8.7 0.8 2.2 1 1 0 1 1 1 0 Hsp20/alpha crystallin family AAA PF00004.24 gi|345005302|ref|YP_004808155.1| - 6.9e-99 327.2 0.0 4.6e-48 162.7 0.0 2.6 3 0 0 3 3 2 2 ATPase family associated with various cellular activities (AAA) CDC48_N PF02359.13 gi|345005302|ref|YP_004808155.1| - 6e-21 74.2 0.2 1.9e-20 72.6 0.1 1.9 1 0 0 1 1 1 1 Cell division protein 48 (CDC48), N-terminal domain AAA_2 PF07724.9 gi|345005302|ref|YP_004808155.1| - 2.9e-16 59.8 0.0 1.1e-06 28.6 0.0 2.7 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) RuvB_N PF05496.7 gi|345005302|ref|YP_004808155.1| - 1.4e-15 56.9 0.0 4.1e-07 29.2 0.0 2.7 3 0 0 3 3 2 2 Holliday junction DNA helicase ruvB N-terminus AAA_16 PF13191.1 gi|345005302|ref|YP_004808155.1| - 3.1e-15 56.6 0.5 6.9e-07 29.4 0.0 3.1 3 1 0 3 3 2 2 AAA ATPase domain CDC48_2 PF02933.12 gi|345005302|ref|YP_004808155.1| - 1.6e-13 50.0 0.2 3.9e-13 48.8 0.1 1.7 1 0 0 1 1 1 1 Cell division protein 48 (CDC48), domain 2 AAA_17 PF13207.1 gi|345005302|ref|YP_004808155.1| - 1.4e-12 48.5 1.8 5e-05 24.1 0.0 3.4 3 2 0 3 3 2 2 AAA domain AAA_22 PF13401.1 gi|345005302|ref|YP_004808155.1| - 1.6e-12 47.7 0.2 0.0001 22.4 0.0 3.7 2 2 0 2 2 2 2 AAA domain AAA_33 PF13671.1 gi|345005302|ref|YP_004808155.1| - 8e-11 42.0 0.0 5.9e-05 22.9 0.0 2.7 2 1 0 2 2 2 2 AAA domain AAA_5 PF07728.9 gi|345005302|ref|YP_004808155.1| - 1e-10 41.5 0.7 0.00048 19.8 0.0 4.2 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA_19 PF13245.1 gi|345005302|ref|YP_004808155.1| - 1.6e-10 40.6 0.3 0.00081 19.0 0.1 3.2 3 0 0 3 3 2 2 Part of AAA domain AAA_14 PF13173.1 gi|345005302|ref|YP_004808155.1| - 1.7e-10 40.8 0.0 0.00015 21.6 0.0 2.7 3 0 0 3 3 2 2 AAA domain TIP49 PF06068.8 gi|345005302|ref|YP_004808155.1| - 6e-10 38.3 0.1 0.00032 19.5 0.0 2.7 3 0 0 3 3 3 2 TIP49 C-terminus IstB_IS21 PF01695.12 gi|345005302|ref|YP_004808155.1| - 3.2e-09 36.4 0.0 0.0004 19.8 0.0 2.4 2 0 0 2 2 2 2 IstB-like ATP binding protein Zeta_toxin PF06414.7 gi|345005302|ref|YP_004808155.1| - 1.2e-08 34.3 0.2 0.0045 16.0 0.0 2.7 3 0 0 3 3 2 2 Zeta toxin RNA_helicase PF00910.17 gi|345005302|ref|YP_004808155.1| - 2.1e-08 34.2 0.0 0.0085 16.2 0.0 2.5 2 0 0 2 2 2 2 RNA helicase AAA_18 PF13238.1 gi|345005302|ref|YP_004808155.1| - 6.4e-08 32.9 0.1 0.012 15.8 0.0 2.7 2 1 0 2 2 2 2 AAA domain AAA_28 PF13521.1 gi|345005302|ref|YP_004808155.1| - 1.4e-07 31.5 0.0 0.01 15.7 0.0 2.8 2 0 0 2 2 2 2 AAA domain DUF815 PF05673.8 gi|345005302|ref|YP_004808155.1| - 3.6e-07 29.3 0.0 0.0026 16.7 0.0 2.8 2 1 0 2 2 2 2 Protein of unknown function (DUF815) Mg_chelatase PF01078.16 gi|345005302|ref|YP_004808155.1| - 7.8e-07 28.4 0.2 0.025 13.7 0.0 2.4 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI Sigma54_activ_2 PF14532.1 gi|345005302|ref|YP_004808155.1| - 1.9e-06 27.9 0.0 0.062 13.3 0.0 3.3 3 0 0 3 3 3 2 Sigma-54 interaction domain AAA_3 PF07726.6 gi|345005302|ref|YP_004808155.1| - 3.2e-06 26.7 0.0 0.041 13.4 0.0 2.5 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) DUF2075 PF09848.4 gi|345005302|ref|YP_004808155.1| - 5.8e-06 25.5 0.0 0.038 12.9 0.0 2.5 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) Arch_ATPase PF01637.13 gi|345005302|ref|YP_004808155.1| - 6.8e-06 25.9 0.0 0.26 10.9 0.0 3.3 2 1 1 3 3 3 2 Archaeal ATPase Sigma54_activat PF00158.21 gi|345005302|ref|YP_004808155.1| - 7.5e-06 25.5 0.0 0.12 11.8 0.0 3.0 2 1 0 2 2 2 2 Sigma-54 interaction domain NACHT PF05729.7 gi|345005302|ref|YP_004808155.1| - 9.3e-06 25.3 0.2 0.32 10.6 0.0 3.7 4 0 0 4 4 4 2 NACHT domain NB-ARC PF00931.17 gi|345005302|ref|YP_004808155.1| - 9.5e-06 24.6 0.0 0.1 11.3 0.0 2.2 2 0 0 2 2 2 2 NB-ARC domain ABC_tran PF00005.22 gi|345005302|ref|YP_004808155.1| - 9.8e-06 25.9 0.0 0.094 13.0 0.0 2.6 2 0 0 2 2 2 2 ABC transporter AAA_25 PF13481.1 gi|345005302|ref|YP_004808155.1| - 1.1e-05 24.9 7.6 0.55 9.6 0.1 4.6 2 2 2 4 4 4 3 AAA domain PhoH PF02562.11 gi|345005302|ref|YP_004808155.1| - 1.1e-05 24.8 0.1 0.074 12.2 0.0 2.4 2 0 0 2 2 2 2 PhoH-like protein NTPase_1 PF03266.10 gi|345005302|ref|YP_004808155.1| - 1.7e-05 24.6 0.1 0.27 10.9 0.0 3.1 2 2 0 2 2 2 2 NTPase AAA_30 PF13604.1 gi|345005302|ref|YP_004808155.1| - 3e-05 23.6 0.0 0.35 10.4 0.0 2.8 2 0 0 2 2 2 2 AAA domain AAA_11 PF13086.1 gi|345005302|ref|YP_004808155.1| - 6e-05 22.7 0.0 0.34 10.4 0.0 2.3 2 0 0 2 2 2 2 AAA domain KaiC PF06745.8 gi|345005302|ref|YP_004808155.1| - 0.00012 21.2 0.0 0.61 9.1 0.0 3.0 3 0 0 3 3 3 2 KaiC Parvo_NS1 PF01057.12 gi|345005302|ref|YP_004808155.1| - 0.00013 20.9 0.0 0.31 9.8 0.0 2.2 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 AAA_24 PF13479.1 gi|345005302|ref|YP_004808155.1| - 0.00013 21.6 0.2 0.042 13.4 0.0 2.4 2 0 0 2 2 2 1 AAA domain UPF0079 PF02367.12 gi|345005302|ref|YP_004808155.1| - 0.00019 21.0 0.0 0.75 9.4 0.0 2.4 2 0 0 2 2 2 2 Uncharacterised P-loop hydrolase UPF0079 T2SE PF00437.15 gi|345005302|ref|YP_004808155.1| - 0.00051 19.0 0.0 0.64 8.8 0.0 2.6 2 0 0 2 2 2 2 Type II/IV secretion system protein Cytidylate_kin2 PF13189.1 gi|345005302|ref|YP_004808155.1| - 0.00061 19.7 0.0 0.037 13.9 0.0 2.4 2 0 0 2 2 2 1 Cytidylate kinase-like family Bac_DnaA PF00308.13 gi|345005302|ref|YP_004808155.1| - 0.00079 19.1 0.0 0.23 11.0 0.0 2.8 3 0 0 3 3 3 1 Bacterial dnaA protein SKI PF01202.17 gi|345005302|ref|YP_004808155.1| - 0.0011 18.8 0.0 1.3 8.8 0.0 2.6 2 0 0 2 2 2 1 Shikimate kinase ResIII PF04851.10 gi|345005302|ref|YP_004808155.1| - 0.0012 18.6 0.0 2.1 8.1 0.0 2.4 2 0 0 2 2 2 2 Type III restriction enzyme, res subunit ATP-synt_ab PF00006.20 gi|345005302|ref|YP_004808155.1| - 0.0042 16.6 0.0 0.74 9.2 0.0 2.4 2 0 0 2 2 2 1 ATP synthase alpha/beta family, nucleotide-binding domain Vps4_C PF09336.5 gi|345005302|ref|YP_004808155.1| - 0.0073 16.1 0.0 3.2 7.7 0.0 2.8 2 0 0 2 2 2 0 Vps4 C terminal oligomerisation domain KAP_NTPase PF07693.9 gi|345005302|ref|YP_004808155.1| - 0.0097 14.9 0.0 2.2 7.1 0.0 2.5 2 2 0 2 2 2 1 KAP family P-loop domain CPT PF07931.7 gi|345005302|ref|YP_004808155.1| - 0.01 15.4 0.0 2.1 7.9 0.0 2.6 2 0 0 2 2 2 0 Chloramphenicol phosphotransferase-like protein AFG1_ATPase PF03969.11 gi|345005302|ref|YP_004808155.1| - 0.014 14.2 0.0 2.9 6.5 0.0 2.5 2 0 0 2 2 2 0 AFG1-like ATPase KTI12 PF08433.5 gi|345005302|ref|YP_004808155.1| - 0.019 14.2 0.0 5.4 6.1 0.0 2.5 2 0 0 2 2 2 0 Chromatin associated protein KTI12 MCM PF00493.18 gi|345005302|ref|YP_004808155.1| - 0.031 13.0 0.0 6.6 5.4 0.0 2.8 3 0 0 3 3 3 0 MCM2/3/5 family Guanylate_kin PF00625.16 gi|345005302|ref|YP_004808155.1| - 0.033 13.6 0.3 21 4.4 0.0 3.5 3 1 1 4 4 3 0 Guanylate kinase Torsin PF06309.6 gi|345005302|ref|YP_004808155.1| - 0.041 13.7 0.0 2.9 7.8 0.0 2.3 2 0 0 2 2 2 0 Torsin AAA_29 PF13555.1 gi|345005302|ref|YP_004808155.1| - 0.046 13.2 0.0 5.2 6.6 0.0 2.4 2 0 0 2 2 2 0 P-loop containing region of AAA domain SUKH-4 PF14435.1 gi|345005302|ref|YP_004808155.1| - 0.067 12.9 3.5 0.16 11.6 0.3 2.7 3 0 0 3 3 3 0 SUKH-4 immunity protein adh_short PF00106.20 gi|345005303|ref|YP_004808156.1| - 1.7e-16 60.6 0.6 4.2e-16 59.3 0.3 1.8 1 1 0 1 1 1 1 short chain dehydrogenase KR PF08659.5 gi|345005303|ref|YP_004808156.1| - 1.5e-05 24.7 0.2 3.6e-05 23.4 0.1 1.7 1 1 0 1 1 1 1 KR domain NAD_binding_10 PF13460.1 gi|345005303|ref|YP_004808156.1| - 0.00051 20.1 0.9 0.0055 16.7 0.3 2.5 1 1 1 2 2 2 1 NADH(P)-binding Epimerase PF01370.16 gi|345005303|ref|YP_004808156.1| - 0.0031 16.9 0.0 0.0071 15.7 0.0 1.5 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family adh_short_C2 PF13561.1 gi|345005303|ref|YP_004808156.1| - 0.0035 17.1 0.0 0.0093 15.7 0.0 1.8 1 1 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase YdjC PF04794.7 gi|345005303|ref|YP_004808156.1| - 0.0072 15.8 0.1 0.011 15.2 0.0 1.4 1 0 0 1 1 1 1 YdjC-like protein ABC_tran PF00005.22 gi|345005304|ref|YP_004808157.1| - 5.5e-23 81.7 0.0 8.1e-23 81.2 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|345005304|ref|YP_004808157.1| - 7.9e-13 49.0 0.0 1.1e-08 35.4 0.0 2.1 2 0 0 2 2 2 2 AAA domain AAA_15 PF13175.1 gi|345005304|ref|YP_004808157.1| - 0.00022 20.4 0.0 0.0018 17.3 0.0 1.9 2 0 0 2 2 2 1 AAA ATPase domain AAA_10 PF12846.2 gi|345005304|ref|YP_004808157.1| - 0.0016 17.9 0.0 0.44 9.9 0.0 2.1 2 0 0 2 2 2 2 AAA-like domain SMC_N PF02463.14 gi|345005304|ref|YP_004808157.1| - 0.0048 16.1 0.0 0.62 9.2 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain ArgK PF03308.11 gi|345005304|ref|YP_004808157.1| - 0.0063 15.3 0.3 0.01 14.6 0.2 1.3 1 0 0 1 1 1 1 ArgK protein AAA_13 PF13166.1 gi|345005304|ref|YP_004808157.1| - 0.015 13.7 0.0 3.6 5.9 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_23 PF13476.1 gi|345005304|ref|YP_004808157.1| - 0.03 14.6 0.3 0.047 14.0 0.2 1.2 1 0 0 1 1 1 0 AAA domain ATP_bind_1 PF03029.12 gi|345005304|ref|YP_004808157.1| - 0.055 13.0 0.1 0.15 11.6 0.0 1.7 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein AAA_29 PF13555.1 gi|345005304|ref|YP_004808157.1| - 0.094 12.2 0.7 0.19 11.2 0.1 1.8 2 0 0 2 2 2 0 P-loop containing region of AAA domain AAA_30 PF13604.1 gi|345005304|ref|YP_004808157.1| - 0.11 12.0 0.4 0.83 9.1 0.1 2.3 3 0 0 3 3 3 0 AAA domain AAA_28 PF13521.1 gi|345005304|ref|YP_004808157.1| - 0.15 12.0 0.4 0.79 9.6 0.1 2.1 2 0 0 2 2 2 0 AAA domain tRNA-synt_1c PF00749.16 gi|345005306|ref|YP_004808159.1| - 3.5e-55 186.8 0.0 4.3e-55 186.5 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (E and Q), catalytic domain tRNA-synt_1c_C PF03950.13 gi|345005306|ref|YP_004808159.1| - 3.1e-18 66.0 0.0 1.4e-17 63.9 0.0 2.0 1 1 0 1 1 1 1 tRNA synthetases class I (E and Q), anti-codon binding domain tRNA-synt_1e PF01406.14 gi|345005306|ref|YP_004808159.1| - 0.11 11.5 0.0 0.27 10.3 0.0 1.7 2 0 0 2 2 2 0 tRNA synthetases class I (C) catalytic domain Aminotran_3 PF00202.16 gi|345005307|ref|YP_004808160.1| - 1.6e-82 277.0 0.0 2.8e-82 276.3 0.0 1.3 2 0 0 2 2 2 1 Aminotransferase class-III Beta_elim_lyase PF01212.16 gi|345005307|ref|YP_004808160.1| - 0.013 14.6 0.0 0.025 13.7 0.0 1.4 1 0 0 1 1 1 0 Beta-eliminating lyase SLA_LP_auto_ag PF05889.8 gi|345005307|ref|YP_004808160.1| - 0.081 11.3 0.0 0.17 10.3 0.0 1.4 2 0 0 2 2 2 0 Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen) HypA PF01155.14 gi|345005308|ref|YP_004808161.1| - 0.0011 18.6 0.7 0.0014 18.2 0.5 1.3 1 1 0 1 1 1 1 Hydrogenase expression/synthesis hypA family DZR PF12773.2 gi|345005308|ref|YP_004808161.1| - 0.028 14.2 0.5 0.05 13.4 0.3 1.4 1 0 0 1 1 1 0 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|345005308|ref|YP_004808161.1| - 0.089 12.0 6.1 0.9 8.8 1.0 2.4 1 1 1 2 2 2 0 zinc-ribbon domain Rubredoxin PF00301.15 gi|345005308|ref|YP_004808161.1| - 0.13 12.1 3.8 6.4 6.7 0.0 2.7 3 0 0 3 3 3 0 Rubredoxin Zn-ribbon_8 PF09723.5 gi|345005308|ref|YP_004808161.1| - 0.17 11.8 3.9 0.35 10.8 2.7 1.5 1 1 0 1 1 1 0 Zinc ribbon domain PRC PF05239.11 gi|345005308|ref|YP_004808161.1| - 0.19 11.6 0.5 0.34 10.7 0.4 1.4 1 1 0 1 1 1 0 PRC-barrel domain DNA_RNApol_7kD PF03604.8 gi|345005308|ref|YP_004808161.1| - 0.22 11.0 0.9 0.37 10.2 0.6 1.3 1 0 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit zf-RanBP PF00641.13 gi|345005308|ref|YP_004808161.1| - 0.37 9.9 2.6 2.1 7.5 0.1 2.1 2 0 0 2 2 2 0 Zn-finger in Ran binding protein and others Nudix_N_2 PF14803.1 gi|345005308|ref|YP_004808161.1| - 0.39 10.4 1.9 11 5.7 0.1 2.3 1 1 1 2 2 2 0 Nudix N-terminal zinc_ribbon_2 PF13240.1 gi|345005308|ref|YP_004808161.1| - 0.52 9.8 4.4 11 5.6 3.0 2.3 1 1 1 2 2 2 0 zinc-ribbon domain Lar_restr_allev PF14354.1 gi|345005308|ref|YP_004808161.1| - 0.87 9.9 3.3 35 4.7 2.3 2.3 1 1 0 1 1 1 0 Restriction alleviation protein Lar TF_Zn_Ribbon PF08271.7 gi|345005308|ref|YP_004808161.1| - 3.2 7.1 5.5 10 5.5 0.6 2.4 1 1 1 2 2 2 0 TFIIB zinc-binding DUF2029 PF09594.5 gi|345005309|ref|YP_004808162.1| - 0.054 12.9 5.3 0.056 12.9 3.7 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2029) Acetyltransf_10 PF13673.1 gi|345005312|ref|YP_004808165.1| - 2.7e-08 33.9 0.0 4.3e-08 33.2 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|345005312|ref|YP_004808165.1| - 1.6e-06 28.1 0.0 2.7e-06 27.4 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|345005312|ref|YP_004808165.1| - 9.1e-05 22.4 0.0 0.00015 21.7 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_9 PF13527.1 gi|345005312|ref|YP_004808165.1| - 0.0081 16.0 0.0 0.025 14.4 0.0 1.8 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|345005312|ref|YP_004808165.1| - 0.01 15.8 0.0 0.013 15.4 0.0 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_13 PF13880.1 gi|345005312|ref|YP_004808165.1| - 0.035 13.8 0.0 0.076 12.7 0.0 1.5 1 0 0 1 1 1 0 ESCO1/2 acetyl-transferase DNA_RNApol_7kD PF03604.8 gi|345005312|ref|YP_004808165.1| - 0.048 13.1 1.3 0.092 12.2 0.9 1.4 1 0 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit Zn-ribbon_8 PF09723.5 gi|345005312|ref|YP_004808165.1| - 0.075 12.9 0.8 0.17 11.8 0.6 1.6 1 0 0 1 1 1 0 Zinc ribbon domain Tnp_P_element_C PF12596.3 gi|345005312|ref|YP_004808165.1| - 0.11 12.8 0.2 0.22 11.8 0.1 1.5 1 0 0 1 1 1 0 87kDa Transposase Nudix_N_2 PF14803.1 gi|345005312|ref|YP_004808165.1| - 0.44 10.2 4.4 2.1 8.1 3.0 2.0 1 1 0 1 1 1 0 Nudix N-terminal zf-B_box PF00643.19 gi|345005312|ref|YP_004808165.1| - 1.9 8.4 4.6 1.8 8.5 0.3 2.1 2 0 0 2 2 2 0 B-box zinc finger PIN PF01850.16 gi|345005314|ref|YP_004808167.1| - 6.3e-09 36.2 0.1 7.5e-09 35.9 0.0 1.0 1 0 0 1 1 1 1 PIN domain Antitoxin-MazE PF04014.13 gi|345005315|ref|YP_004808168.1| - 1.1e-08 34.6 0.3 1.7e-08 34.0 0.2 1.2 1 0 0 1 1 1 1 Antidote-toxin recognition MazE gp32 PF08804.5 gi|345005316|ref|YP_004808169.1| - 0.0019 18.2 0.1 0.0022 18.0 0.0 1.1 1 0 0 1 1 1 1 gp32 DNA binding protein like Nudix_N_2 PF14803.1 gi|345005316|ref|YP_004808169.1| - 0.1 12.3 0.4 6.9 6.4 0.1 2.2 2 0 0 2 2 2 0 Nudix N-terminal Zn-ribbon_8 PF09723.5 gi|345005316|ref|YP_004808169.1| - 0.1 12.5 0.6 0.17 11.8 0.4 1.3 1 0 0 1 1 1 0 Zinc ribbon domain zf-RanBP PF00641.13 gi|345005316|ref|YP_004808169.1| - 0.27 10.3 3.0 0.48 9.5 0.1 2.1 2 0 0 2 2 2 0 Zn-finger in Ran binding protein and others GATA PF00320.22 gi|345005316|ref|YP_004808169.1| - 2 7.8 4.5 24 4.3 3.1 2.1 1 1 0 1 1 1 0 GATA zinc finger adh_short PF00106.20 gi|345005317|ref|YP_004808170.1| - 1.2e-21 77.4 2.0 1.5e-21 77.0 1.4 1.1 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|345005317|ref|YP_004808170.1| - 9.8e-14 51.6 0.0 1.2e-13 51.3 0.0 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.5 gi|345005317|ref|YP_004808170.1| - 4.1e-13 49.3 0.4 5.4e-13 48.9 0.3 1.1 1 0 0 1 1 1 1 KR domain Epimerase PF01370.16 gi|345005317|ref|YP_004808170.1| - 1.6e-07 30.9 0.3 1.1e-06 28.2 0.2 2.0 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family NAD_binding_10 PF13460.1 gi|345005317|ref|YP_004808170.1| - 0.00043 20.3 2.8 0.002 18.1 1.9 1.9 2 1 0 2 2 2 1 NADH(P)-binding NAD_binding_4 PF07993.7 gi|345005317|ref|YP_004808170.1| - 0.001 18.0 0.4 0.3 9.9 0.3 2.2 1 1 0 1 1 1 1 Male sterility protein NmrA PF05368.8 gi|345005317|ref|YP_004808170.1| - 0.0039 16.4 0.1 0.0055 15.9 0.1 1.3 1 0 0 1 1 1 1 NmrA-like family DapB_N PF01113.15 gi|345005317|ref|YP_004808170.1| - 0.051 13.5 0.2 0.087 12.7 0.1 1.4 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus Polysacc_synt_2 PF02719.10 gi|345005317|ref|YP_004808170.1| - 0.095 11.5 0.1 0.18 10.6 0.1 1.5 1 1 0 1 1 1 0 Polysaccharide biosynthesis protein RmlD_sub_bind PF04321.12 gi|345005317|ref|YP_004808170.1| - 0.097 11.5 0.0 0.15 10.8 0.0 1.3 1 0 0 1 1 1 0 RmlD substrate binding domain Ldh_1_N PF00056.18 gi|345005317|ref|YP_004808170.1| - 0.46 10.3 1.9 3.2 7.5 1.3 2.2 1 1 0 1 1 1 0 lactate/malate dehydrogenase, NAD binding domain Amino_oxidase PF01593.19 gi|345005318|ref|YP_004808171.1| - 5.4e-22 78.4 0.5 5.4e-15 55.3 0.0 2.2 2 0 0 2 2 2 2 Flavin containing amine oxidoreductase NAD_binding_8 PF13450.1 gi|345005318|ref|YP_004808171.1| - 4.1e-16 58.7 0.1 1.4e-15 57.0 0.1 1.9 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain DAO PF01266.19 gi|345005318|ref|YP_004808171.1| - 4.6e-12 45.5 0.0 1.7e-09 37.0 0.0 2.7 3 0 0 3 3 3 1 FAD dependent oxidoreductase Pyr_redox PF00070.22 gi|345005318|ref|YP_004808171.1| - 2.3e-08 34.3 0.9 2e-06 28.1 0.3 3.0 3 1 1 4 4 3 1 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.2 gi|345005318|ref|YP_004808171.1| - 8.9e-06 25.0 0.0 4.2e-05 22.8 0.0 1.9 2 0 0 2 2 2 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.9 gi|345005318|ref|YP_004808171.1| - 2.2e-05 24.4 0.4 6e-05 23.0 0.3 1.7 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.19 gi|345005318|ref|YP_004808171.1| - 5.5e-05 22.1 1.6 8.6e-05 21.5 1.1 1.2 1 0 0 1 1 1 1 FAD binding domain FAD_binding_3 PF01494.14 gi|345005318|ref|YP_004808171.1| - 9.7e-05 21.5 0.3 0.00016 20.8 0.2 1.3 1 0 0 1 1 1 1 FAD binding domain HI0933_like PF03486.9 gi|345005318|ref|YP_004808171.1| - 0.00013 20.6 0.0 0.0011 17.4 0.3 2.1 2 0 0 2 2 2 1 HI0933-like protein Pyr_redox_3 PF13738.1 gi|345005318|ref|YP_004808171.1| - 0.0002 21.5 0.0 0.0011 19.0 0.0 2.0 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.12 gi|345005318|ref|YP_004808171.1| - 0.0018 17.4 0.2 0.0035 16.4 0.1 1.4 1 0 0 1 1 1 1 Thi4 family Strep_67kDa_ant PF06100.6 gi|345005318|ref|YP_004808171.1| - 0.0034 15.8 0.0 0.0046 15.3 0.0 1.1 1 0 0 1 1 1 1 Streptococcal 67 kDa myosin-cross-reactive antigen like family GIDA PF01134.17 gi|345005318|ref|YP_004808171.1| - 0.0062 15.4 1.1 0.011 14.6 0.7 1.4 1 0 0 1 1 1 1 Glucose inhibited division protein A ApbA PF02558.11 gi|345005318|ref|YP_004808171.1| - 0.0073 15.7 0.3 0.013 14.9 0.2 1.4 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA 3HCDH_N PF02737.13 gi|345005318|ref|YP_004808171.1| - 0.0096 15.5 0.2 0.017 14.8 0.1 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_Gly3P_dh_N PF01210.18 gi|345005318|ref|YP_004808171.1| - 0.024 14.3 0.1 0.04 13.6 0.1 1.3 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus IlvN PF07991.7 gi|345005318|ref|YP_004808171.1| - 0.041 13.2 0.0 0.072 12.4 0.0 1.4 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, catalytic domain NAD_binding_7 PF13241.1 gi|345005318|ref|YP_004808171.1| - 0.044 14.0 0.0 0.095 12.9 0.0 1.5 1 0 0 1 1 1 0 Putative NAD(P)-binding FMO-like PF00743.14 gi|345005318|ref|YP_004808171.1| - 0.23 9.6 0.1 0.32 9.1 0.1 1.1 1 0 0 1 1 1 0 Flavin-binding monooxygenase-like UbiA PF01040.13 gi|345005319|ref|YP_004808172.1| - 5.1e-29 101.2 20.2 6.5e-29 100.9 14.0 1.1 1 0 0 1 1 1 1 UbiA prenyltransferase family DUF422 PF04240.7 gi|345005320|ref|YP_004808173.1| - 8.5e-77 257.3 16.8 1.2e-76 256.9 11.7 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF422) TMEM238 PF15125.1 gi|345005320|ref|YP_004808173.1| - 0.042 13.7 0.3 0.042 13.7 0.2 2.8 3 1 0 3 3 3 0 TMEM238 protein family HNH_2 PF13391.1 gi|345005321|ref|YP_004808174.1| - 8.6e-09 35.0 0.3 1.8e-08 34.0 0.2 1.5 1 0 0 1 1 1 1 HNH endonuclease Pro_3_hydrox_C PF05373.6 gi|345005321|ref|YP_004808174.1| - 0.12 12.3 0.0 0.29 11.1 0.0 1.6 1 0 0 1 1 1 0 L-proline 3-hydroxylase, C-terminal OrfB_IS605 PF01385.14 gi|345005322|ref|YP_004808175.1| - 4.1e-23 81.9 0.3 6.8e-23 81.2 0.2 1.3 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|345005322|ref|YP_004808175.1| - 2e-17 62.6 0.3 3.9e-17 61.6 0.2 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain HTH_OrfB_IS605 PF12323.3 gi|345005322|ref|YP_004808175.1| - 1.3e-05 24.4 0.0 3e-05 23.2 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain Zn_Tnp_IS91 PF14319.1 gi|345005322|ref|YP_004808175.1| - 0.0049 16.3 0.8 0.013 15.0 0.6 1.6 1 0 0 1 1 1 1 Transposase zinc-binding domain DZR PF12773.2 gi|345005322|ref|YP_004808175.1| - 0.015 15.1 1.5 0.028 14.2 1.0 1.4 1 0 0 1 1 1 0 Double zinc ribbon DUF1777 PF08648.7 gi|345005322|ref|YP_004808175.1| - 0.032 13.9 5.1 1.4 8.6 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1777) UPF0547 PF10571.4 gi|345005322|ref|YP_004808175.1| - 0.043 13.5 1.1 0.68 9.6 0.1 2.3 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zf-ribbon_3 PF13248.1 gi|345005322|ref|YP_004808175.1| - 0.052 12.7 0.8 1.9 7.8 0.0 2.3 2 0 0 2 2 2 0 zinc-ribbon domain DUF1610 PF07754.6 gi|345005322|ref|YP_004808175.1| - 6.9 6.8 6.4 2.9 8.0 0.2 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) SQS_PSY PF00494.14 gi|345005323|ref|YP_004808176.1| - 1.6e-63 214.4 7.2 2e-63 214.1 5.0 1.1 1 0 0 1 1 1 1 Squalene/phytoene synthase Rieske PF00355.21 gi|345005324|ref|YP_004808177.1| - 0.0026 17.3 3.7 0.0027 17.2 2.6 1.0 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain Tax PF02959.11 gi|345005324|ref|YP_004808177.1| - 0.034 13.6 1.1 0.035 13.5 0.8 1.0 1 0 0 1 1 1 0 HTLV Tax zf-C4_Topoisom PF01396.14 gi|345005324|ref|YP_004808177.1| - 0.036 13.5 1.7 0.082 12.4 1.2 1.6 1 1 0 1 1 1 0 Topoisomerase DNA binding C4 zinc finger DZR PF12773.2 gi|345005324|ref|YP_004808177.1| - 0.096 12.5 1.4 0.11 12.3 1.0 1.3 1 0 0 1 1 1 0 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|345005324|ref|YP_004808177.1| - 0.1 12.1 0.1 0.1 12.1 0.1 2.0 2 1 0 1 1 1 0 zinc-ribbon domain zf-ISL3 PF14690.1 gi|345005324|ref|YP_004808177.1| - 0.11 12.6 3.7 0.11 12.6 2.5 1.8 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Auto_anti-p27 PF06677.7 gi|345005324|ref|YP_004808177.1| - 0.14 11.9 3.6 0.2 11.4 2.5 1.3 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) OrfB_Zn_ribbon PF07282.6 gi|345005324|ref|YP_004808177.1| - 0.19 11.3 2.2 0.23 11.1 1.5 1.1 1 0 0 1 1 1 0 Putative transposase DNA-binding domain Ogr_Delta PF04606.7 gi|345005324|ref|YP_004808177.1| - 0.21 11.2 3.9 0.33 10.6 2.7 1.4 1 1 0 1 1 1 0 Ogr/Delta-like zinc finger A2L_zn_ribbon PF08792.5 gi|345005324|ref|YP_004808177.1| - 0.3 10.6 2.6 5.5 6.5 0.5 2.2 1 1 1 2 2 2 0 A2L zinc ribbon domain TF_Zn_Ribbon PF08271.7 gi|345005324|ref|YP_004808177.1| - 0.35 10.2 3.1 1.3 8.4 2.1 1.9 1 1 0 1 1 1 0 TFIIB zinc-binding Zn_ribbon_recom PF13408.1 gi|345005324|ref|YP_004808177.1| - 0.39 11.0 3.8 0.52 10.6 2.6 1.2 1 0 0 1 1 1 0 Recombinase zinc beta ribbon domain zf-tcix PF14952.1 gi|345005324|ref|YP_004808177.1| - 0.42 9.9 2.7 0.68 9.3 1.9 1.5 1 1 0 1 1 1 0 Putative treble-clef, zinc-finger, Zn-binding Fer4_4 PF12800.2 gi|345005324|ref|YP_004808177.1| - 0.42 11.0 2.5 0.77 10.2 1.7 1.5 1 1 0 1 1 1 0 4Fe-4S binding domain zf-Mss51 PF13824.1 gi|345005324|ref|YP_004808177.1| - 0.5 10.2 6.3 0.67 9.8 4.4 1.3 1 0 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 zf-ribbon_3 PF13248.1 gi|345005324|ref|YP_004808177.1| - 0.63 9.3 4.8 0.23 10.7 1.2 2.0 1 1 0 1 1 1 0 zinc-ribbon domain Lar_restr_allev PF14354.1 gi|345005324|ref|YP_004808177.1| - 0.89 9.9 5.7 1.7 9.0 3.9 1.6 1 1 0 1 1 1 0 Restriction alleviation protein Lar DUF1610 PF07754.6 gi|345005324|ref|YP_004808177.1| - 1.5 9.0 7.7 13 5.9 1.1 2.7 2 1 1 3 3 3 0 Domain of unknown function (DUF1610) PhnA_Zn_Ribbon PF08274.7 gi|345005324|ref|YP_004808177.1| - 2.4 8.0 4.8 15 5.4 3.3 2.1 1 1 0 1 1 1 0 PhnA Zinc-Ribbon Oxidored_molyb PF00174.14 gi|345005325|ref|YP_004808178.1| - 3e-37 127.6 0.0 4.5e-37 127.0 0.0 1.2 1 0 0 1 1 1 1 Oxidoreductase molybdopterin binding domain Mo-co_dimer PF03404.11 gi|345005325|ref|YP_004808178.1| - 3.6e-16 58.9 0.2 6.7e-16 58.1 0.1 1.4 1 0 0 1 1 1 1 Mo-co oxidoreductase dimerisation domain BNR PF02012.15 gi|345005325|ref|YP_004808178.1| - 0.048 13.4 0.8 0.14 12.0 0.5 1.9 1 0 0 1 1 1 0 BNR/Asp-box repeat Amidohydro_1 PF01979.15 gi|345005326|ref|YP_004808179.1| - 5.5e-53 180.7 2.5 8.1e-53 180.2 1.8 1.2 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_4 PF13147.1 gi|345005326|ref|YP_004808179.1| - 5.6e-17 62.6 13.6 1.3e-16 61.5 9.4 1.6 1 1 0 1 1 1 1 Amidohydrolase Amidohydro_3 PF07969.6 gi|345005326|ref|YP_004808179.1| - 4.4e-16 59.0 14.8 4.4e-15 55.8 6.1 2.3 1 1 1 2 2 2 2 Amidohydrolase family Amidohydro_5 PF13594.1 gi|345005326|ref|YP_004808179.1| - 7.3e-08 32.1 0.1 2.9e-07 30.1 0.0 2.0 1 0 0 1 1 1 1 Amidohydrolase A_deaminase PF00962.17 gi|345005326|ref|YP_004808179.1| - 0.004 16.1 0.0 0.01 14.8 0.0 1.7 1 1 0 1 1 1 1 Adenosine/AMP deaminase Ribonuc_red_lgC PF02867.10 gi|345005327|ref|YP_004808180.1| - 2.2e-143 478.6 0.0 2e-78 264.3 0.0 2.1 2 0 0 2 2 2 2 Ribonucleotide reductase, barrel domain TSCPD PF12637.2 gi|345005327|ref|YP_004808180.1| - 1.3e-27 95.5 0.0 5e-27 93.6 0.0 2.1 1 0 0 1 1 1 1 TSCPD domain Ribonuc_red_lgN PF00317.16 gi|345005327|ref|YP_004808180.1| - 9.5e-24 83.0 0.1 2.8e-23 81.4 0.1 1.8 1 0 0 1 1 1 1 Ribonucleotide reductase, all-alpha domain LAGLIDADG_3 PF14528.1 gi|345005327|ref|YP_004808180.1| - 7.4e-21 74.1 0.0 2.8e-20 72.3 0.0 2.1 1 0 0 1 1 1 1 LAGLIDADG-like domain Intein_splicing PF14890.1 gi|345005327|ref|YP_004808180.1| - 3.2e-15 55.8 0.0 4.9e-13 48.6 0.0 3.1 1 1 0 1 1 1 1 Intein splicing domain TrwB_AAD_bind PF10412.4 gi|345005327|ref|YP_004808180.1| - 0.048 12.2 0.0 0.086 11.4 0.0 1.3 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain TraG-D_C PF12696.2 gi|345005327|ref|YP_004808180.1| - 0.067 13.0 0.0 0.18 11.6 0.0 1.7 1 0 0 1 1 1 0 TraM recognition site of TraD and TraG LAGLIDADG_WhiA PF14527.1 gi|345005327|ref|YP_004808180.1| - 0.18 11.7 0.0 0.46 10.3 0.0 1.7 1 0 0 1 1 1 0 WhiA LAGLIDADG-like domain OrfB_Zn_ribbon PF07282.6 gi|345005328|ref|YP_004808181.1| - 1.5e-23 82.1 1.4 1.5e-23 82.1 1.0 1.9 2 0 0 2 2 2 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.14 gi|345005328|ref|YP_004808181.1| - 3.8e-11 42.8 0.1 6e-11 42.1 0.0 1.3 1 0 0 1 1 1 1 Probable transposase DUF2072 PF09845.4 gi|345005328|ref|YP_004808181.1| - 0.0099 15.8 2.1 0.89 9.4 0.0 2.7 2 0 0 2 2 2 1 Zn-ribbon containing protein (DUF2072) HypA PF01155.14 gi|345005328|ref|YP_004808181.1| - 0.031 13.9 0.3 0.07 12.8 0.2 1.6 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family DZR PF12773.2 gi|345005328|ref|YP_004808181.1| - 0.28 11.0 7.1 0.058 13.2 2.3 1.8 2 0 0 2 2 2 0 Double zinc ribbon Fzo_mitofusin PF04799.8 gi|345005329|ref|YP_004808182.1| - 0.054 12.8 8.7 0.066 12.5 6.1 1.1 1 0 0 1 1 1 0 fzo-like conserved region GATase PF00117.23 gi|345005330|ref|YP_004808183.1| - 4.8e-44 150.1 0.0 5.6e-44 149.9 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|345005330|ref|YP_004808183.1| - 8.3e-05 22.1 0.1 0.00035 20.1 0.0 1.8 1 1 0 1 1 1 1 Peptidase C26 Chorismate_bind PF00425.13 gi|345005331|ref|YP_004808184.1| - 1.2e-88 296.7 0.0 4.1e-88 295.0 0.0 1.8 2 0 0 2 2 2 1 chorismate binding enzyme Anth_synt_I_N PF04715.8 gi|345005331|ref|YP_004808184.1| - 2.7e-19 69.5 1.4 6e-14 52.2 0.0 3.7 4 1 0 4 4 4 2 Anthranilate synthase component I, N terminal region PRAI PF00697.17 gi|345005332|ref|YP_004808185.1| - 7.3e-37 126.8 0.0 8.3e-37 126.6 0.0 1.0 1 0 0 1 1 1 1 N-(5'phosphoribosyl)anthranilate (PRA) isomerase NMO PF03060.10 gi|345005332|ref|YP_004808185.1| - 1e-05 24.8 0.6 2e-05 23.9 0.5 1.5 1 1 1 2 2 2 1 Nitronate monooxygenase TMP-TENI PF02581.12 gi|345005332|ref|YP_004808185.1| - 0.0023 17.0 0.2 0.0039 16.3 0.0 1.5 2 0 0 2 2 2 1 Thiamine monophosphate synthase/TENI Amidohydro_2 PF04909.9 gi|345005332|ref|YP_004808185.1| - 0.022 14.3 0.5 0.04 13.4 0.3 1.5 1 1 0 1 1 1 0 Amidohydrolase Glycos_transf_3 PF00591.16 gi|345005333|ref|YP_004808186.1| - 1.1e-100 336.2 1.8 1.5e-100 335.8 1.2 1.2 1 0 0 1 1 1 1 Glycosyl transferase family, a/b domain Glycos_trans_3N PF02885.12 gi|345005333|ref|YP_004808186.1| - 2.3e-17 62.3 2.2 2.3e-17 62.3 1.5 2.4 3 0 0 3 3 3 1 Glycosyl transferase family, helical bundle domain DUF2717 PF10911.3 gi|345005333|ref|YP_004808186.1| - 0.0075 15.7 0.0 0.019 14.4 0.0 1.7 1 0 0 1 1 1 1 Protein of unknown function (DUF2717) DUF1850 PF08905.6 gi|345005333|ref|YP_004808186.1| - 0.038 13.7 0.4 0.22 11.3 0.0 2.3 3 0 0 3 3 3 0 Domain of unknown function (DUF1850) Bac_globin PF01152.16 gi|345005334|ref|YP_004808187.1| - 2e-27 95.5 0.0 2.2e-27 95.4 0.0 1.0 1 0 0 1 1 1 1 Bacterial-like globin Protoglobin PF11563.3 gi|345005334|ref|YP_004808187.1| - 0.0012 18.5 0.0 0.0048 16.5 0.0 1.7 1 1 1 2 2 2 1 Protoglobin HTH_10 PF04967.7 gi|345005335|ref|YP_004808188.1| - 9.8e-16 57.0 0.1 1.6e-15 56.3 0.1 1.4 1 0 0 1 1 1 1 HTH DNA binding domain MarR_2 PF12802.2 gi|345005335|ref|YP_004808188.1| - 0.0017 17.9 1.2 0.0083 15.7 0.1 2.6 2 1 0 2 2 2 1 MarR family HTH_IclR PF09339.5 gi|345005335|ref|YP_004808188.1| - 0.0042 16.6 0.5 0.037 13.5 0.1 2.5 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_38 PF13936.1 gi|345005335|ref|YP_004808188.1| - 0.005 16.3 0.0 0.0081 15.6 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain DUF4268 PF14088.1 gi|345005336|ref|YP_004808189.1| - 3.7e-25 88.2 0.1 1.2e-24 86.5 0.0 1.9 3 0 0 3 3 3 1 Domain of unknown function (DUF4268) DUF91 PF01939.11 gi|345005336|ref|YP_004808189.1| - 0.086 11.9 0.0 0.15 11.1 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function DUF91 HATPase_c PF02518.21 gi|345005337|ref|YP_004808190.1| - 3.4e-20 71.8 1.3 1.1e-19 70.1 0.3 2.2 1 1 1 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GAF_2 PF13185.1 gi|345005337|ref|YP_004808190.1| - 1.7e-09 38.2 0.0 5e-09 36.7 0.0 1.8 1 0 0 1 1 1 1 GAF domain PAS_4 PF08448.5 gi|345005337|ref|YP_004808190.1| - 2.1e-06 27.7 0.7 4.3e-06 26.7 0.1 1.8 2 0 0 2 2 2 1 PAS fold HATPase_c_2 PF13581.1 gi|345005337|ref|YP_004808190.1| - 5.1e-06 26.2 0.0 1.6e-05 24.7 0.0 1.8 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HisKA PF00512.20 gi|345005337|ref|YP_004808190.1| - 0.00017 21.4 0.7 0.00059 19.7 0.5 1.9 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain GAF_3 PF13492.1 gi|345005337|ref|YP_004808190.1| - 0.00065 19.8 0.0 0.0017 18.4 0.0 1.7 1 0 0 1 1 1 1 GAF domain HATPase_c_5 PF14501.1 gi|345005337|ref|YP_004808190.1| - 0.00083 19.0 0.0 0.0022 17.6 0.0 1.7 1 0 0 1 1 1 1 GHKL domain PAS_9 PF13426.1 gi|345005337|ref|YP_004808190.1| - 0.014 15.7 0.2 0.044 14.1 0.0 2.0 2 0 0 2 2 2 0 PAS domain AnfG_VnfG PF03139.10 gi|345005337|ref|YP_004808190.1| - 0.021 14.6 0.0 0.068 12.9 0.0 1.8 1 0 0 1 1 1 0 Vanadium/alternative nitrogenase delta subunit Peripla_BP_6 PF13458.1 gi|345005338|ref|YP_004808191.1| - 3.3e-54 184.5 7.5 4.1e-54 184.2 5.2 1.1 1 0 0 1 1 1 1 Periplasmic binding protein ANF_receptor PF01094.23 gi|345005338|ref|YP_004808191.1| - 1e-35 123.2 0.0 1.3e-35 122.8 0.0 1.1 1 0 0 1 1 1 1 Receptor family ligand binding region Peripla_BP_5 PF13433.1 gi|345005338|ref|YP_004808191.1| - 4.3e-17 61.9 0.7 6.4e-17 61.3 0.5 1.2 1 0 0 1 1 1 1 Periplasmic binding protein domain TAT_signal PF10518.4 gi|345005338|ref|YP_004808191.1| - 0.002 17.9 0.5 0.002 17.9 0.4 2.4 2 0 0 2 2 2 1 TAT (twin-arginine translocation) pathway signal sequence BPD_transp_2 PF02653.11 gi|345005339|ref|YP_004808192.1| - 4.2e-43 147.2 33.7 4.8e-43 147.0 23.4 1.0 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component BPD_transp_2 PF02653.11 gi|345005340|ref|YP_004808193.1| - 1.2e-37 129.2 44.3 1.4e-37 129.1 30.7 1.0 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component DUF2809 PF10990.3 gi|345005340|ref|YP_004808193.1| - 0.023 15.1 4.1 0.023 15.1 2.8 2.7 3 0 0 3 3 3 0 Protein of unknown function (DUF2809) SP_C-Propep PF08999.5 gi|345005340|ref|YP_004808193.1| - 7.8 6.0 8.8 0.93 9.0 2.4 2.3 1 1 2 3 3 3 0 Surfactant protein C, N terminal propeptide ABC_tran PF00005.22 gi|345005341|ref|YP_004808194.1| - 1.2e-30 106.5 0.0 1.6e-30 106.1 0.0 1.1 1 0 0 1 1 1 1 ABC transporter BCA_ABC_TP_C PF12399.3 gi|345005341|ref|YP_004808194.1| - 4.5e-10 38.9 0.2 1.1e-09 37.6 0.1 1.7 1 0 0 1 1 1 1 Branched-chain amino acid ATP-binding cassette transporter AAA_21 PF13304.1 gi|345005341|ref|YP_004808194.1| - 4.8e-08 33.2 0.3 0.0065 16.4 0.0 2.1 1 1 0 2 2 2 2 AAA domain AAA_23 PF13476.1 gi|345005341|ref|YP_004808194.1| - 0.00019 21.8 0.9 0.00039 20.8 0.6 1.4 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|345005341|ref|YP_004808194.1| - 0.0014 17.8 0.3 0.73 9.0 0.1 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_22 PF13401.1 gi|345005341|ref|YP_004808194.1| - 0.0046 17.0 0.7 0.058 13.5 0.5 2.1 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|345005341|ref|YP_004808194.1| - 0.0094 15.4 0.1 0.024 14.1 0.1 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_30 PF13604.1 gi|345005341|ref|YP_004808194.1| - 0.012 15.2 0.0 0.026 14.1 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA PF00004.24 gi|345005341|ref|YP_004808194.1| - 0.013 15.6 0.2 0.14 12.3 0.1 2.3 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) NurA PF09376.5 gi|345005341|ref|YP_004808194.1| - 0.014 14.9 0.1 0.02 14.4 0.1 1.1 1 0 0 1 1 1 0 NurA domain AAA_16 PF13191.1 gi|345005341|ref|YP_004808194.1| - 0.16 11.9 0.6 9.5 6.1 0.0 2.1 2 0 0 2 2 2 0 AAA ATPase domain ABC_tran PF00005.22 gi|345005342|ref|YP_004808195.1| - 1.2e-32 113.0 0.0 1.6e-32 112.6 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|345005342|ref|YP_004808195.1| - 9e-12 45.5 0.1 0.00013 22.0 0.0 2.1 1 1 0 2 2 2 2 AAA domain AAA_23 PF13476.1 gi|345005342|ref|YP_004808195.1| - 4.4e-05 23.9 0.0 7.3e-05 23.1 0.0 1.3 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|345005342|ref|YP_004808195.1| - 8.1e-05 21.9 0.0 0.006 15.8 0.0 2.2 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|345005342|ref|YP_004808195.1| - 0.0001 21.7 0.0 0.00024 20.5 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain DUF258 PF03193.11 gi|345005342|ref|YP_004808195.1| - 0.00013 21.1 0.0 0.00021 20.5 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_16 PF13191.1 gi|345005342|ref|YP_004808195.1| - 0.00035 20.6 0.1 0.04 13.9 0.0 2.2 2 0 0 2 2 2 1 AAA ATPase domain AAA_25 PF13481.1 gi|345005342|ref|YP_004808195.1| - 0.00043 19.7 0.1 0.0011 18.3 0.1 1.8 1 1 0 1 1 1 1 AAA domain Dynamin_N PF00350.18 gi|345005342|ref|YP_004808195.1| - 0.00046 20.0 0.0 0.0007 19.4 0.0 1.3 1 1 0 1 1 1 1 Dynamin family AAA_10 PF12846.2 gi|345005342|ref|YP_004808195.1| - 0.00055 19.4 0.0 0.0048 16.3 0.0 2.0 2 0 0 2 2 2 1 AAA-like domain AAA_22 PF13401.1 gi|345005342|ref|YP_004808195.1| - 0.0047 17.0 0.1 0.013 15.6 0.1 1.9 1 1 0 1 1 1 1 AAA domain Miro PF08477.8 gi|345005342|ref|YP_004808195.1| - 0.0071 16.8 0.0 0.018 15.5 0.0 1.6 1 0 0 1 1 1 1 Miro-like protein AAA_33 PF13671.1 gi|345005342|ref|YP_004808195.1| - 0.0098 15.7 0.2 0.013 15.3 0.2 1.6 1 1 0 1 1 1 1 AAA domain MMR_HSR1 PF01926.18 gi|345005342|ref|YP_004808195.1| - 0.01 15.7 0.1 0.013 15.3 0.0 1.4 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_15 PF13175.1 gi|345005342|ref|YP_004808195.1| - 0.014 14.4 0.0 0.12 11.4 0.0 1.9 2 0 0 2 2 2 0 AAA ATPase domain NACHT PF05729.7 gi|345005342|ref|YP_004808195.1| - 0.015 14.9 0.2 0.025 14.2 0.2 1.3 1 0 0 1 1 1 0 NACHT domain AAA_17 PF13207.1 gi|345005342|ref|YP_004808195.1| - 0.018 15.8 0.2 0.032 15.0 0.1 1.6 1 1 0 1 1 1 0 AAA domain AAA_30 PF13604.1 gi|345005342|ref|YP_004808195.1| - 0.029 13.9 0.1 0.12 11.9 0.0 1.9 2 0 0 2 2 2 0 AAA domain FtsK_SpoIIIE PF01580.13 gi|345005342|ref|YP_004808195.1| - 0.033 13.6 0.0 0.058 12.8 0.0 1.3 1 0 0 1 1 1 0 FtsK/SpoIIIE family AAA_14 PF13173.1 gi|345005342|ref|YP_004808195.1| - 0.035 14.0 0.0 0.086 12.7 0.0 1.6 2 0 0 2 2 2 0 AAA domain MutS_V PF00488.16 gi|345005342|ref|YP_004808195.1| - 0.037 13.4 0.0 0.074 12.4 0.0 1.4 1 0 0 1 1 1 0 MutS domain V MobB PF03205.9 gi|345005342|ref|YP_004808195.1| - 0.041 13.5 0.2 0.075 12.7 0.1 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B NB-ARC PF00931.17 gi|345005342|ref|YP_004808195.1| - 0.06 12.1 0.0 0.087 11.6 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain ABC_ATPase PF09818.4 gi|345005342|ref|YP_004808195.1| - 0.088 11.3 0.2 0.25 9.9 0.1 1.7 2 0 0 2 2 2 0 Predicted ATPase of the ABC class AAA_28 PF13521.1 gi|345005342|ref|YP_004808195.1| - 0.092 12.7 0.3 0.24 11.3 0.2 1.7 1 0 0 1 1 1 0 AAA domain Arch_ATPase PF01637.13 gi|345005342|ref|YP_004808195.1| - 0.1 12.2 0.0 0.17 11.5 0.0 1.3 1 0 0 1 1 1 0 Archaeal ATPase AAA_24 PF13479.1 gi|345005342|ref|YP_004808195.1| - 0.12 11.9 0.3 0.19 11.2 0.2 1.2 1 0 0 1 1 1 0 AAA domain ATP-synt_ab PF00006.20 gi|345005342|ref|YP_004808195.1| - 0.13 11.7 0.0 0.13 11.6 0.0 1.2 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain cobW PF02492.14 gi|345005342|ref|YP_004808195.1| - 0.15 11.4 0.2 0.28 10.6 0.1 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain Peptidase_S8 PF00082.17 gi|345005343|ref|YP_004808196.1| - 5.5e-52 176.6 1.5 8.1e-52 176.1 1.0 1.3 1 0 0 1 1 1 1 Subtilase family ANTAR PF03861.9 gi|345005343|ref|YP_004808196.1| - 0.066 12.7 0.1 0.19 11.3 0.0 1.8 1 0 0 1 1 1 0 ANTAR domain FAD-oxidase_C PF02913.14 gi|345005344|ref|YP_004808197.1| - 1.8e-60 204.3 0.0 2.5e-60 203.8 0.0 1.2 1 0 0 1 1 1 1 FAD linked oxidases, C-terminal domain FAD_binding_4 PF01565.18 gi|345005344|ref|YP_004808197.1| - 3.3e-38 130.2 0.2 6.4e-38 129.3 0.1 1.5 1 0 0 1 1 1 1 FAD binding domain Fer2 PF00111.22 gi|345005345|ref|YP_004808198.1| - 1.3e-05 24.8 0.2 2e-05 24.2 0.1 1.4 1 1 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer2_4 PF13510.1 gi|345005345|ref|YP_004808198.1| - 0.026 14.3 0.3 0.058 13.2 0.2 1.5 1 1 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain DUF457 PF04307.9 gi|345005346|ref|YP_004808199.1| - 2.1e-07 30.3 12.2 4e-07 29.5 8.4 1.5 1 1 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) ApoL PF05461.6 gi|345005346|ref|YP_004808199.1| - 0.058 12.6 2.8 0.099 11.8 2.0 1.3 1 0 0 1 1 1 0 Apolipoprotein L PAP2 PF01569.16 gi|345005346|ref|YP_004808199.1| - 1.8 8.2 6.9 0.66 9.6 0.6 2.7 2 1 0 2 2 2 0 PAP2 superfamily Methyltransf_31 PF13847.1 gi|345005347|ref|YP_004808200.1| - 2.6e-09 36.8 0.0 8.7e-09 35.1 0.0 1.8 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|345005347|ref|YP_004808200.1| - 2.8e-09 37.5 0.1 8.9e-09 35.9 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|345005347|ref|YP_004808200.1| - 2.3e-07 31.1 0.0 1.4e-06 28.6 0.0 2.2 2 1 0 2 2 2 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|345005347|ref|YP_004808200.1| - 2.5e-07 30.5 0.0 9e-07 28.7 0.0 2.0 2 1 0 2 2 2 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|345005347|ref|YP_004808200.1| - 1.6e-05 24.8 3.4 6.5e-05 22.9 1.0 2.6 2 1 0 2 2 2 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|345005347|ref|YP_004808200.1| - 3.4e-05 24.2 0.0 0.00013 22.3 0.0 2.0 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|345005347|ref|YP_004808200.1| - 0.0001 22.5 0.1 0.00022 21.5 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain FmrO PF07091.6 gi|345005347|ref|YP_004808200.1| - 0.043 12.7 0.0 0.069 12.1 0.0 1.3 1 0 0 1 1 1 0 Ribosomal RNA methyltransferase (FmrO) MetW PF07021.7 gi|345005347|ref|YP_004808200.1| - 0.048 13.0 0.0 0.082 12.2 0.0 1.3 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW MTS PF05175.9 gi|345005347|ref|YP_004808200.1| - 0.16 11.3 0.0 0.66 9.3 0.0 1.9 2 0 0 2 2 2 0 Methyltransferase small domain FtsJ PF01728.14 gi|345005347|ref|YP_004808200.1| - 0.17 11.8 0.0 0.27 11.2 0.0 1.5 1 1 0 1 1 1 0 FtsJ-like methyltransferase PTPS PF01242.14 gi|345005348|ref|YP_004808201.1| - 2.5e-21 75.6 0.0 2.9e-21 75.4 0.0 1.0 1 0 0 1 1 1 1 6-pyruvoyl tetrahydropterin synthase ADH_zinc_N PF00107.21 gi|345005349|ref|YP_004808202.1| - 1.5e-10 40.7 0.0 2.6e-10 39.9 0.0 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.1 gi|345005349|ref|YP_004808202.1| - 8.1e-05 23.5 0.1 0.00018 22.3 0.1 1.6 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_N PF08240.7 gi|345005349|ref|YP_004808202.1| - 0.0076 16.0 0.0 0.028 14.1 0.0 2.0 2 0 0 2 2 2 1 Alcohol dehydrogenase GroES-like domain Methyltransf_18 PF12847.2 gi|345005349|ref|YP_004808202.1| - 0.038 14.5 0.0 0.12 12.9 0.0 1.8 1 1 1 2 2 2 0 Methyltransferase domain CDP-OH_P_transf PF01066.16 gi|345005350|ref|YP_004808203.1| - 2.7e-12 46.8 2.6 2.7e-12 46.8 1.8 2.0 2 0 0 2 2 2 1 CDP-alcohol phosphatidyltransferase DUF2604 PF10790.4 gi|345005350|ref|YP_004808203.1| - 0.14 12.3 0.0 0.24 11.5 0.0 1.3 1 0 0 1 1 1 0 Protein of Unknown function (DUF2604) Aldo_ket_red PF00248.16 gi|345005351|ref|YP_004808204.1| - 3.3e-43 147.5 0.0 5.1e-43 146.9 0.0 1.2 1 0 0 1 1 1 1 Aldo/keto reductase family GFO_IDH_MocA PF01408.17 gi|345005351|ref|YP_004808204.1| - 2e-19 70.2 1.7 1.4e-18 67.5 0.1 2.7 3 0 0 3 3 3 1 Oxidoreductase family, NAD-binding Rossmann fold NAD_binding_3 PF03447.11 gi|345005351|ref|YP_004808204.1| - 6.6e-07 29.7 2.1 1.3e-06 28.7 1.5 1.5 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain GFO_IDH_MocA_C PF02894.12 gi|345005351|ref|YP_004808204.1| - 1.6e-05 24.6 0.1 0.0004 20.1 0.0 2.6 2 0 0 2 2 2 1 Oxidoreductase family, C-terminal alpha/beta domain Saccharop_dh PF03435.13 gi|345005351|ref|YP_004808204.1| - 0.2 10.5 2.2 0.32 9.9 0.6 1.9 3 0 0 3 3 3 0 Saccharopine dehydrogenase Glycos_transf_1 PF00534.15 gi|345005352|ref|YP_004808205.1| - 5.5e-12 45.4 0.0 9.6e-12 44.6 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|345005352|ref|YP_004808205.1| - 1.7e-08 34.6 0.1 3.8e-08 33.5 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|345005352|ref|YP_004808205.1| - 7.7e-06 25.7 0.3 0.0008 19.1 0.0 3.1 2 1 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.1 gi|345005352|ref|YP_004808205.1| - 0.063 13.5 0.0 0.16 12.2 0.0 1.7 1 1 0 1 1 1 0 Glycosyl transferases group 1 DUF486 PF04342.7 gi|345005353|ref|YP_004808206.1| - 0.058 13.4 0.7 0.14 12.1 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function, DUF486 DUF4282 PF14110.1 gi|345005353|ref|YP_004808206.1| - 0.16 12.1 10.8 0.075 13.2 1.9 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4282) DUF4131 PF13567.1 gi|345005353|ref|YP_004808206.1| - 1.3 8.4 7.5 2 7.8 5.2 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF4131) SseC PF04888.7 gi|345005353|ref|YP_004808206.1| - 1.3 8.2 5.4 1.7 7.8 3.7 1.1 1 0 0 1 1 1 0 Secretion system effector C (SseC) like family VRR_NUC PF08774.6 gi|345005354|ref|YP_004808207.1| - 0.13 12.2 0.0 0.29 11.1 0.0 1.5 1 0 0 1 1 1 0 VRR-NUC domain Peptidase_M20 PF01546.23 gi|345005355|ref|YP_004808208.1| - 8.1e-25 87.4 0.5 1.3e-24 86.7 0.3 1.4 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.9 gi|345005355|ref|YP_004808208.1| - 7.3e-16 57.9 0.0 1.2e-15 57.1 0.0 1.4 1 0 0 1 1 1 1 Peptidase dimerisation domain adh_short_C2 PF13561.1 gi|345005356|ref|YP_004808209.1| - 3.8e-33 115.2 0.4 4.4e-33 115.0 0.3 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.20 gi|345005356|ref|YP_004808209.1| - 4.9e-33 114.4 3.3 6.7e-33 113.9 2.3 1.2 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.5 gi|345005356|ref|YP_004808209.1| - 7.3e-11 42.0 1.5 1.3e-10 41.2 1.0 1.4 1 1 0 1 1 1 1 KR domain 3HCDH_N PF02737.13 gi|345005356|ref|YP_004808209.1| - 3.1e-06 26.9 2.4 6e-06 26.0 1.1 1.8 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Glyco_trans_4_4 PF13579.1 gi|345005356|ref|YP_004808209.1| - 0.0082 16.3 0.3 0.11 12.6 0.0 2.1 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Epimerase PF01370.16 gi|345005356|ref|YP_004808209.1| - 0.01 15.3 0.2 0.017 14.5 0.1 1.4 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family Methyltransf_11 PF08241.7 gi|345005356|ref|YP_004808209.1| - 0.014 15.8 0.1 0.024 15.1 0.1 1.3 1 0 0 1 1 1 0 Methyltransferase domain TrkA_N PF02254.13 gi|345005356|ref|YP_004808209.1| - 0.016 15.2 1.2 0.051 13.5 0.4 2.1 2 0 0 2 2 2 0 TrkA-N domain Methyltransf_25 PF13649.1 gi|345005356|ref|YP_004808209.1| - 0.029 14.7 0.0 0.046 14.0 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain UDPG_MGDP_dh_N PF03721.9 gi|345005356|ref|YP_004808209.1| - 0.046 13.1 0.1 0.075 12.4 0.1 1.3 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NAD_binding_10 PF13460.1 gi|345005356|ref|YP_004808209.1| - 0.051 13.5 1.7 0.14 12.1 1.0 1.8 2 0 0 2 2 2 0 NADH(P)-binding Abhydrolase_5 PF12695.2 gi|345005356|ref|YP_004808209.1| - 0.052 13.2 0.1 0.42 10.3 0.0 2.1 1 1 0 2 2 2 0 Alpha/beta hydrolase family Methyltransf_26 PF13659.1 gi|345005356|ref|YP_004808209.1| - 0.062 13.3 0.3 0.084 12.9 0.2 1.6 1 1 0 1 1 1 0 Methyltransferase domain Methyltransf_23 PF13489.1 gi|345005356|ref|YP_004808209.1| - 0.13 12.0 0.0 0.19 11.4 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain HTH_IclR PF09339.5 gi|345005357|ref|YP_004808210.1| - 0.00042 19.8 0.0 0.00059 19.3 0.0 1.2 1 0 0 1 1 1 1 IclR helix-turn-helix domain TrmB PF01978.14 gi|345005357|ref|YP_004808210.1| - 0.0034 17.0 0.0 0.005 16.5 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|345005357|ref|YP_004808210.1| - 0.0089 15.6 0.0 0.014 15.0 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.1 gi|345005357|ref|YP_004808210.1| - 0.018 15.3 0.0 0.035 14.4 0.0 1.5 1 1 0 1 1 1 0 Winged helix DNA-binding domain Sulfolobus_pRN PF05584.6 gi|345005357|ref|YP_004808210.1| - 0.022 14.7 0.0 0.031 14.2 0.0 1.2 1 0 0 1 1 1 0 Sulfolobus plasmid regulatory protein PadR PF03551.9 gi|345005357|ref|YP_004808210.1| - 0.034 13.8 0.0 0.067 12.9 0.0 1.6 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family Rrf2 PF02082.15 gi|345005357|ref|YP_004808210.1| - 0.046 13.8 0.0 0.083 13.0 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator Fe_dep_repress PF01325.14 gi|345005357|ref|YP_004808210.1| - 0.083 12.8 0.0 0.15 12.0 0.0 1.5 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain PemK PF02452.12 gi|345005358|ref|YP_004808211.1| - 0.00093 19.3 0.0 0.001 19.2 0.0 1.0 1 0 0 1 1 1 1 PemK-like protein Aldedh PF00171.17 gi|345005359|ref|YP_004808212.1| - 8.3e-171 568.3 0.7 1e-170 568.0 0.5 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family LuxC PF05893.9 gi|345005359|ref|YP_004808212.1| - 0.08 11.6 0.0 0.14 10.8 0.0 1.3 1 0 0 1 1 1 0 Acyl-CoA reductase (LuxC) SBP_bac_5 PF00496.17 gi|345005360|ref|YP_004808213.1| - 9.9e-73 245.0 1.4 1.2e-72 244.7 0.9 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle UCR_Fe-S_N PF10399.4 gi|345005360|ref|YP_004808213.1| - 0.00074 18.6 0.5 0.002 17.2 0.3 1.8 1 0 0 1 1 1 1 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal TAT_signal PF10518.4 gi|345005360|ref|YP_004808213.1| - 0.004 17.0 6.9 0.012 15.5 4.8 1.9 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence Alkyl_sulf_C PF14864.1 gi|345005360|ref|YP_004808213.1| - 0.058 13.3 0.0 0.12 12.3 0.0 1.4 1 0 0 1 1 1 0 Alkyl sulfatase C-terminal BPD_transp_1 PF00528.17 gi|345005361|ref|YP_004808214.1| - 1.7e-37 128.6 10.2 1.7e-37 128.6 7.1 2.1 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component SPC12 PF06645.8 gi|345005361|ref|YP_004808214.1| - 1.7 8.5 4.0 11 5.9 0.1 2.9 2 1 1 3 3 3 0 Microsomal signal peptidase 12 kDa subunit (SPC12) Abi PF02517.11 gi|345005361|ref|YP_004808214.1| - 5.4 7.2 7.3 9.1 6.5 1.4 3.1 2 2 0 2 2 2 0 CAAX protease self-immunity BPD_transp_1 PF00528.17 gi|345005362|ref|YP_004808215.1| - 1.1e-29 103.2 6.7 1.1e-29 103.2 4.6 1.7 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.2 gi|345005362|ref|YP_004808215.1| - 6.4e-10 38.2 0.4 6.4e-10 38.2 0.3 2.6 2 0 0 2 2 2 1 N-terminal TM domain of oligopeptide transport permease C ABC_tran PF00005.22 gi|345005363|ref|YP_004808216.1| - 3.7e-27 95.2 0.0 5.1e-27 94.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|345005363|ref|YP_004808216.1| - 1.9e-19 69.7 0.5 4.1e-19 68.7 0.4 1.6 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|345005363|ref|YP_004808216.1| - 9.3e-07 29.0 0.2 8.3e-06 25.9 0.0 2.0 2 0 0 2 2 2 1 AAA domain SMC_N PF02463.14 gi|345005363|ref|YP_004808216.1| - 0.0041 16.3 0.0 0.0064 15.7 0.0 1.2 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.1 gi|345005363|ref|YP_004808216.1| - 0.01 15.9 0.6 0.13 12.4 0.4 2.2 1 1 0 1 1 1 0 AAA domain AAA_16 PF13191.1 gi|345005363|ref|YP_004808216.1| - 0.022 14.7 0.6 0.039 13.9 0.4 1.6 1 1 0 1 1 1 0 AAA ATPase domain FtsK_SpoIIIE PF01580.13 gi|345005363|ref|YP_004808216.1| - 0.057 12.8 0.4 0.21 11.0 0.0 1.9 2 0 0 2 2 2 0 FtsK/SpoIIIE family AAA_29 PF13555.1 gi|345005363|ref|YP_004808216.1| - 0.081 12.4 0.1 0.16 11.5 0.1 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_10 PF12846.2 gi|345005363|ref|YP_004808216.1| - 0.13 11.7 1.2 0.23 10.8 0.3 1.6 1 1 0 1 1 1 0 AAA-like domain ABC_tran PF00005.22 gi|345005364|ref|YP_004808217.1| - 1e-32 113.2 0.0 1.4e-32 112.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|345005364|ref|YP_004808217.1| - 5.2e-18 65.1 0.6 5.2e-18 65.1 0.4 1.7 2 0 0 2 2 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|345005364|ref|YP_004808217.1| - 4.8e-07 30.0 0.0 5.3e-05 23.3 0.0 2.1 1 1 0 2 2 2 1 AAA domain SMC_N PF02463.14 gi|345005364|ref|YP_004808217.1| - 3.5e-05 23.1 0.0 7.4e-05 22.0 0.0 1.4 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain DUF258 PF03193.11 gi|345005364|ref|YP_004808217.1| - 0.00036 19.7 0.0 0.00077 18.6 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_16 PF13191.1 gi|345005364|ref|YP_004808217.1| - 0.0036 17.2 0.2 0.0077 16.2 0.1 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.1 gi|345005364|ref|YP_004808217.1| - 0.004 16.6 0.1 0.0066 15.9 0.1 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain FtsK_SpoIIIE PF01580.13 gi|345005364|ref|YP_004808217.1| - 0.0077 15.7 0.0 0.016 14.7 0.0 1.4 1 0 0 1 1 1 1 FtsK/SpoIIIE family AAA_22 PF13401.1 gi|345005364|ref|YP_004808217.1| - 0.023 14.8 0.3 0.052 13.6 0.2 1.8 1 1 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.18 gi|345005364|ref|YP_004808217.1| - 0.033 14.1 0.0 0.083 12.8 0.0 1.6 1 1 0 1 1 1 0 50S ribosome-binding GTPase ATP-synt_ab PF00006.20 gi|345005364|ref|YP_004808217.1| - 0.034 13.6 0.1 0.055 12.9 0.0 1.3 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain Septin PF00735.13 gi|345005364|ref|YP_004808217.1| - 0.059 12.3 0.0 0.085 11.8 0.0 1.2 1 0 0 1 1 1 0 Septin AAA_10 PF12846.2 gi|345005364|ref|YP_004808217.1| - 0.084 12.2 0.1 0.12 11.8 0.0 1.5 1 1 0 1 1 1 0 AAA-like domain NACHT PF05729.7 gi|345005364|ref|YP_004808217.1| - 0.088 12.4 0.1 0.21 11.2 0.1 1.6 1 0 0 1 1 1 0 NACHT domain RNA_helicase PF00910.17 gi|345005364|ref|YP_004808217.1| - 0.093 12.9 0.1 0.17 12.0 0.0 1.4 1 0 0 1 1 1 0 RNA helicase AAA_13 PF13166.1 gi|345005364|ref|YP_004808217.1| - 0.11 10.9 0.0 0.42 9.0 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_25 PF13481.1 gi|345005364|ref|YP_004808217.1| - 0.11 11.8 0.1 0.37 10.1 0.1 1.8 1 1 0 1 1 1 0 AAA domain AAA_17 PF13207.1 gi|345005364|ref|YP_004808217.1| - 0.14 12.9 0.0 0.39 11.5 0.0 1.8 2 0 0 2 2 2 0 AAA domain KaiC PF06745.8 gi|345005364|ref|YP_004808217.1| - 0.15 11.1 0.0 0.28 10.2 0.0 1.3 1 0 0 1 1 1 0 KaiC Dynamin_N PF00350.18 gi|345005364|ref|YP_004808217.1| - 0.18 11.6 0.1 0.33 10.7 0.1 1.4 1 0 0 1 1 1 0 Dynamin family Iso_dh PF00180.15 gi|345005365|ref|YP_004808218.1| - 4.3e-88 295.5 0.0 5.2e-88 295.3 0.0 1.0 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase Meth_synt_1 PF08267.7 gi|345005366|ref|YP_004808219.1| - 2e-28 99.5 0.0 2.6e-25 89.3 0.0 2.0 1 1 1 2 2 2 2 Cobalamin-independent synthase, N-terminal domain Meth_synt_2 PF01717.13 gi|345005366|ref|YP_004808219.1| - 9.1e-19 67.5 0.0 1.1e-18 67.3 0.0 1.0 1 0 0 1 1 1 1 Cobalamin-independent synthase, Catalytic domain Meth_synt_2 PF01717.13 gi|345005367|ref|YP_004808220.1| - 4e-77 259.3 0.0 4.7e-77 259.1 0.0 1.0 1 0 0 1 1 1 1 Cobalamin-independent synthase, Catalytic domain Meth_synt_1 PF08267.7 gi|345005367|ref|YP_004808220.1| - 5.7e-21 75.0 0.0 1.4e-20 73.8 0.0 1.5 2 0 0 2 2 2 1 Cobalamin-independent synthase, N-terminal domain URO-D PF01208.12 gi|345005367|ref|YP_004808220.1| - 5.9e-06 25.4 0.0 8.7e-06 24.8 0.0 1.3 1 0 0 1 1 1 1 Uroporphyrinogen decarboxylase (URO-D) IF-2B PF01008.12 gi|345005368|ref|YP_004808221.1| - 1.4e-75 253.8 1.2 1.7e-75 253.6 0.8 1.0 1 0 0 1 1 1 1 Initiation factor 2 subunit family DUF763 PF05559.6 gi|345005368|ref|YP_004808221.1| - 0.11 11.4 0.1 0.15 10.9 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF763) PfkB PF00294.19 gi|345005369|ref|YP_004808222.1| - 1.3e-42 145.9 5.4 1.7e-42 145.6 3.7 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase NDK PF00334.14 gi|345005371|ref|YP_004808224.1| - 1.5e-53 180.2 0.0 1.7e-53 180.0 0.0 1.0 1 0 0 1 1 1 1 Nucleoside diphosphate kinase Ribosomal_L24e PF01246.15 gi|345005372|ref|YP_004808225.1| - 8.4e-25 86.4 0.0 8.8e-25 86.3 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L24e zf-FCS PF06467.9 gi|345005372|ref|YP_004808225.1| - 2.8e-05 23.6 2.2 4.1e-05 23.1 1.5 1.2 1 0 0 1 1 1 1 MYM-type Zinc finger with FCS sequence motif Arc_trans_TRASH PF08394.5 gi|345005372|ref|YP_004808225.1| - 0.00097 19.2 1.0 0.0017 18.4 0.7 1.4 1 1 0 1 1 1 1 Archaeal TRASH domain DUF329 PF03884.9 gi|345005372|ref|YP_004808225.1| - 0.035 13.6 1.9 0.13 11.8 1.3 2.0 1 1 0 1 1 1 0 Domain of unknown function (DUF329) SerH PF06873.6 gi|345005372|ref|YP_004808225.1| - 0.096 11.2 0.1 0.097 11.2 0.0 1.0 1 0 0 1 1 1 0 Cell surface immobilisation antigen SerH ICAM_N PF03921.9 gi|345005372|ref|YP_004808225.1| - 0.11 11.9 0.0 0.12 11.8 0.0 1.1 1 0 0 1 1 1 0 Intercellular adhesion molecule (ICAM), N-terminal domain zinc_ribbon_2 PF13240.1 gi|345005372|ref|YP_004808225.1| - 6.1 6.4 6.4 0.44 10.1 0.4 2.0 2 1 0 1 1 1 0 zinc-ribbon domain Ribosomal_S28e PF01200.13 gi|345005373|ref|YP_004808226.1| - 8.5e-29 99.1 0.7 9.6e-29 98.9 0.5 1.0 1 0 0 1 1 1 1 Ribosomal protein S28e Ribosomal_L7Ae PF01248.21 gi|345005374|ref|YP_004808227.1| - 1.4e-25 88.6 0.0 1.6e-25 88.4 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family PELOTA_1 PF15608.1 gi|345005374|ref|YP_004808227.1| - 4.8e-05 23.0 0.0 6.1e-05 22.7 0.0 1.2 1 0 0 1 1 1 1 PELOTA RNA binding domain eRF1_3 PF03465.10 gi|345005374|ref|YP_004808227.1| - 0.047 13.9 0.1 0.11 12.7 0.0 1.6 1 1 0 1 1 1 0 eRF1 domain 3 DUF1269 PF06897.7 gi|345005374|ref|YP_004808227.1| - 0.18 11.8 1.5 2 8.4 0.0 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF1269) GNAT_acetyltr_2 PF13718.1 gi|345005375|ref|YP_004808228.1| - 9.5e-51 171.9 0.0 1.4e-50 171.3 0.0 1.3 1 0 0 1 1 1 1 GNAT acetyltransferase 2 Helicase_RecD PF05127.9 gi|345005375|ref|YP_004808228.1| - 7.5e-47 159.2 0.0 1.2e-46 158.5 0.0 1.3 1 0 0 1 1 1 1 Helicase DUF1726 PF08351.6 gi|345005375|ref|YP_004808228.1| - 1.2e-21 76.1 0.0 1.2e-20 72.9 0.0 2.5 2 0 0 2 2 2 1 Domain of unknown function (DUF1726) tRNA_bind_2 PF13725.1 gi|345005375|ref|YP_004808228.1| - 5.9e-09 35.9 0.0 1.2e-08 34.9 0.0 1.6 1 0 0 1 1 1 1 Possible tRNA binding domain AAA_30 PF13604.1 gi|345005375|ref|YP_004808228.1| - 1e-05 25.2 0.5 5.8e-05 22.7 0.1 2.3 2 0 0 2 2 2 1 AAA domain Acetyltransf_7 PF13508.1 gi|345005375|ref|YP_004808228.1| - 1.8e-05 24.7 0.0 3.7e-05 23.8 0.0 1.6 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain AAA_19 PF13245.1 gi|345005375|ref|YP_004808228.1| - 0.0051 16.5 1.0 0.0051 16.5 0.7 3.0 2 0 0 2 2 2 1 Part of AAA domain Fer4 PF00037.22 gi|345005376|ref|YP_004808229.1| - 1.1e-13 50.1 12.7 7.8e-08 31.6 2.7 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|345005376|ref|YP_004808229.1| - 1.6e-10 41.1 12.7 7.7e-09 35.7 4.9 1.6 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|345005376|ref|YP_004808229.1| - 2.9e-10 40.2 5.5 4e-10 39.8 3.8 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|345005376|ref|YP_004808229.1| - 3.5e-10 39.2 13.7 2.5e-06 27.1 3.3 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|345005376|ref|YP_004808229.1| - 5.8e-09 35.6 7.1 9.6e-09 34.9 5.0 1.4 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|345005376|ref|YP_004808229.1| - 9.4e-09 34.9 18.4 5.5e-06 26.0 5.7 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|345005376|ref|YP_004808229.1| - 1.6e-07 31.2 10.3 4.6e-06 26.5 4.7 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|345005376|ref|YP_004808229.1| - 6.3e-07 28.9 9.9 0.00069 19.3 1.9 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|345005376|ref|YP_004808229.1| - 1.1e-06 29.2 4.9 7.3e-05 23.4 0.6 2.2 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_17 PF13534.1 gi|345005376|ref|YP_004808229.1| - 1.6e-06 28.3 1.3 0.025 14.9 0.3 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|345005376|ref|YP_004808229.1| - 2.5e-06 27.3 7.4 0.00024 21.1 2.0 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.1 gi|345005376|ref|YP_004808229.1| - 2.9e-05 24.4 4.5 0.0005 20.4 0.8 2.2 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|345005376|ref|YP_004808229.1| - 0.00044 20.6 12.2 0.0029 18.0 3.6 2.3 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_13 PF13370.1 gi|345005376|ref|YP_004808229.1| - 0.00081 19.7 14.0 0.0055 17.0 9.7 2.3 1 1 0 1 1 1 1 4Fe-4S single cluster domain Fer4_15 PF13459.1 gi|345005376|ref|YP_004808229.1| - 0.0037 17.7 15.6 0.082 13.4 10.7 2.6 1 1 1 2 2 2 2 4Fe-4S single cluster domain DUF456 PF04306.8 gi|345005377|ref|YP_004808230.1| - 9.5e-21 74.2 24.1 9.5e-21 74.2 16.7 1.5 2 0 0 2 2 2 1 Protein of unknown function (DUF456) DUF3169 PF11368.3 gi|345005377|ref|YP_004808230.1| - 0.31 10.2 2.9 0.15 11.2 0.5 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF3169) ResB PF05140.9 gi|345005377|ref|YP_004808230.1| - 3 6.3 6.2 0.29 9.6 0.1 2.0 2 0 0 2 2 2 0 ResB-like family AFOR_C PF01314.13 gi|345005378|ref|YP_004808231.1| - 3.4e-78 262.9 2.3 1.5e-77 260.8 1.6 1.9 1 1 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.10 gi|345005378|ref|YP_004808231.1| - 4.2e-51 173.1 0.0 6.6e-51 172.5 0.0 1.2 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain Amidase PF01425.16 gi|345005379|ref|YP_004808232.1| - 6.1e-97 325.2 2.0 6.8e-97 325.1 1.4 1.0 1 0 0 1 1 1 1 Amidase RWD PF05773.17 gi|345005380|ref|YP_004808233.1| - 0.084 12.7 0.0 0.11 12.3 0.0 1.1 1 0 0 1 1 1 0 RWD domain DUF457 PF04307.9 gi|345005381|ref|YP_004808234.1| - 4.3e-13 48.8 27.8 7.8e-09 35.0 6.2 2.6 2 1 0 2 2 2 2 Predicted membrane-bound metal-dependent hydrolase (DUF457) TctA PF01970.11 gi|345005382|ref|YP_004808235.1| - 1.4e-51 175.2 50.7 1.7e-51 174.9 35.1 1.1 1 0 0 1 1 1 1 Tripartite tricarboxylate transporter TctA family Usp PF00582.21 gi|345005383|ref|YP_004808236.1| - 5.9e-13 49.2 1.3 6.8e-13 49.0 0.9 1.1 1 0 0 1 1 1 1 Universal stress protein family ETF PF01012.16 gi|345005383|ref|YP_004808236.1| - 0.0072 16.0 0.4 0.013 15.2 0.3 1.4 1 1 0 1 1 1 1 Electron transfer flavoprotein domain 5_nucleotid_C PF02872.13 gi|345005384|ref|YP_004808237.1| - 4.4e-31 107.9 0.0 7.7e-31 107.1 0.0 1.4 1 0 0 1 1 1 1 5'-nucleotidase, C-terminal domain Metallophos PF00149.23 gi|345005384|ref|YP_004808237.1| - 1.4e-10 40.9 0.0 2.2e-10 40.2 0.0 1.3 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.2 gi|345005384|ref|YP_004808237.1| - 0.011 15.5 0.4 0.052 13.3 0.3 2.0 1 1 0 1 1 1 0 Calcineurin-like phosphoesterase superfamily domain Dodecin PF07311.7 gi|345005385|ref|YP_004808238.1| - 2.2e-22 78.8 0.2 2.4e-22 78.7 0.1 1.0 1 0 0 1 1 1 1 Dodecin EF1_GNE PF00736.14 gi|345005386|ref|YP_004808239.1| - 5.3e-22 77.3 0.0 5.6e-22 77.2 0.0 1.0 1 0 0 1 1 1 1 EF-1 guanine nucleotide exchange domain DUF1610 PF07754.6 gi|345005387|ref|YP_004808240.1| - 6.8e-08 32.4 16.9 0.00014 21.8 3.7 2.2 2 0 0 2 2 2 2 Domain of unknown function (DUF1610) zf-Mss51 PF13824.1 gi|345005387|ref|YP_004808240.1| - 0.00037 20.2 10.9 0.35 10.7 3.5 3.1 1 1 1 2 2 2 2 Zinc-finger of mitochondrial splicing suppressor 51 NMDAR2_C PF10565.4 gi|345005387|ref|YP_004808240.1| - 0.0043 15.7 3.4 0.0047 15.6 2.3 1.0 1 0 0 1 1 1 1 N-methyl D-aspartate receptor 2B3 C-terminus PolC_DP2 PF03833.8 gi|345005387|ref|YP_004808240.1| - 0.0062 14.2 4.6 0.0065 14.2 3.2 1.0 1 0 0 1 1 1 1 DNA polymerase II large subunit DP2 DZR PF12773.2 gi|345005387|ref|YP_004808240.1| - 0.009 15.8 12.6 1.2 8.9 8.8 2.5 1 1 0 1 1 1 1 Double zinc ribbon DUF2039 PF10217.4 gi|345005387|ref|YP_004808240.1| - 0.039 13.9 4.5 0.059 13.3 3.1 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2039) Zn_Tnp_IS91 PF14319.1 gi|345005387|ref|YP_004808240.1| - 0.04 13.4 6.3 0.053 13.0 4.4 1.2 1 0 0 1 1 1 0 Transposase zinc-binding domain FYVE_2 PF02318.11 gi|345005387|ref|YP_004808240.1| - 0.045 13.6 4.2 0.051 13.4 2.9 1.1 1 0 0 1 1 1 0 FYVE-type zinc finger OrfB_Zn_ribbon PF07282.6 gi|345005387|ref|YP_004808240.1| - 0.049 13.2 11.2 0.1 12.2 1.0 2.5 1 1 1 2 2 2 0 Putative transposase DNA-binding domain C1_1 PF00130.17 gi|345005387|ref|YP_004808240.1| - 0.057 13.1 0.6 0.057 13.1 0.4 2.3 1 1 1 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) zf-UBP PF02148.14 gi|345005387|ref|YP_004808240.1| - 0.17 12.0 1.3 0.17 12.0 0.9 2.5 2 1 1 3 3 2 0 Zn-finger in ubiquitin-hydrolases and other protein zf-HIT PF04438.11 gi|345005387|ref|YP_004808240.1| - 0.3 10.7 14.7 1.4 8.6 1.7 2.9 2 2 0 2 2 2 0 HIT zinc finger zf-C2H2 PF00096.21 gi|345005387|ref|YP_004808240.1| - 0.37 11.2 16.6 3.7 8.0 0.2 4.1 4 0 0 4 4 4 0 Zinc finger, C2H2 type DNA_RNApol_7kD PF03604.8 gi|345005387|ref|YP_004808240.1| - 0.4 10.2 11.9 0.51 9.8 0.7 3.0 1 1 1 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit zf-RING_5 PF14634.1 gi|345005387|ref|YP_004808240.1| - 0.41 10.3 10.6 1.7 8.4 0.8 2.4 2 0 0 2 2 2 0 zinc-RING finger domain zinc_ribbon_4 PF13717.1 gi|345005387|ref|YP_004808240.1| - 0.53 10.0 0.1 0.53 10.0 0.1 3.7 3 1 1 4 4 4 0 zinc-ribbon domain zf-MYND PF01753.13 gi|345005387|ref|YP_004808240.1| - 0.55 10.1 7.8 1.3 8.9 2.8 2.2 1 1 1 2 2 2 0 MYND finger zinc_ribbon_5 PF13719.1 gi|345005387|ref|YP_004808240.1| - 0.7 9.5 0.1 0.7 9.5 0.1 3.7 3 1 1 4 4 4 0 zinc-ribbon domain C1_3 PF07649.7 gi|345005387|ref|YP_004808240.1| - 0.8 9.7 12.4 0.51 10.4 2.5 2.4 2 1 0 2 2 2 0 C1-like domain IBR PF01485.16 gi|345005387|ref|YP_004808240.1| - 1.1 9.1 10.5 6.6 6.6 7.3 2.0 1 1 0 1 1 1 0 IBR domain Prok-RING_1 PF14446.1 gi|345005387|ref|YP_004808240.1| - 1.1 9.0 11.2 0.43 10.3 1.1 2.3 1 1 1 2 2 2 0 Prokaryotic RING finger family 1 UPF0547 PF10571.4 gi|345005387|ref|YP_004808240.1| - 1.2 8.8 13.9 0.42 10.3 6.0 3.0 2 1 0 2 2 2 0 Uncharacterised protein family UPF0547 zf-H2C2_2 PF13465.1 gi|345005387|ref|YP_004808240.1| - 1.5 9.2 16.2 2.6 8.4 0.5 3.5 1 1 2 3 3 3 0 Zinc-finger double domain zf-B_box PF00643.19 gi|345005387|ref|YP_004808240.1| - 1.7 8.5 9.1 1.6 8.6 2.6 2.3 1 1 1 2 2 2 0 B-box zinc finger DUF2296 PF10058.4 gi|345005387|ref|YP_004808240.1| - 2.3 8.0 11.1 7.9 6.3 0.7 3.3 1 1 2 3 3 3 0 Predicted integral membrane metal-binding protein (DUF2296) Zn_Tnp_IS1595 PF12760.2 gi|345005387|ref|YP_004808240.1| - 2.4 8.0 19.2 1.3e+02 2.5 0.2 3.5 1 1 1 2 2 2 0 Transposase zinc-ribbon domain NMD3 PF04981.8 gi|345005387|ref|YP_004808240.1| - 2.5 7.1 9.1 3.3 6.7 6.3 1.1 1 0 0 1 1 1 0 NMD3 family zf-ribbon_3 PF13248.1 gi|345005387|ref|YP_004808240.1| - 2.7 7.3 16.1 5.9 6.2 2.7 3.8 1 1 1 2 2 2 0 zinc-ribbon domain Nudix_N_2 PF14803.1 gi|345005387|ref|YP_004808240.1| - 2.8 7.6 13.7 0.48 10.1 1.6 3.7 2 1 2 4 4 4 0 Nudix N-terminal RNHCP PF12647.2 gi|345005387|ref|YP_004808240.1| - 3.5 7.5 11.0 1.2 9.0 1.2 2.5 1 1 1 2 2 2 0 RNHCP domain DUF2387 PF09526.5 gi|345005387|ref|YP_004808240.1| - 3.5 7.6 11.7 0.84 9.5 0.1 2.5 1 1 1 2 2 2 0 Probable metal-binding protein (DUF2387) zf-AN1 PF01428.11 gi|345005387|ref|YP_004808240.1| - 3.5 7.5 10.3 6.3 6.7 1.6 2.6 1 1 0 2 2 2 0 AN1-like Zinc finger Zn-ribbon_8 PF09723.5 gi|345005387|ref|YP_004808240.1| - 3.6 7.6 19.8 19 5.2 9.3 3.8 1 1 2 3 3 3 0 Zinc ribbon domain Auto_anti-p27 PF06677.7 gi|345005387|ref|YP_004808240.1| - 4.3 7.1 13.9 42 4.0 6.9 3.4 2 1 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Ribosomal_L37ae PF01780.14 gi|345005387|ref|YP_004808240.1| - 4.9 7.0 7.8 84 3.1 5.4 2.8 1 1 0 1 1 1 0 Ribosomal L37ae protein family GFA PF04828.9 gi|345005387|ref|YP_004808240.1| - 5.5 6.9 14.1 3.6 7.6 2.6 3.5 1 1 2 3 3 3 0 Glutathione-dependent formaldehyde-activating enzyme TFIIS_C PF01096.13 gi|345005387|ref|YP_004808240.1| - 6.5 6.4 15.8 4 7.1 0.4 4.0 2 1 2 4 4 4 0 Transcription factor S-II (TFIIS) zinc_ribbon_2 PF13240.1 gi|345005387|ref|YP_004808240.1| - 7.2 6.2 16.5 10 5.7 2.3 3.8 2 1 1 3 3 3 0 zinc-ribbon domain Spt4 PF06093.8 gi|345005387|ref|YP_004808240.1| - 7.5 6.5 8.4 25 4.8 5.8 1.8 1 1 0 1 1 1 0 Spt4/RpoE2 zinc finger zf-tcix PF14952.1 gi|345005387|ref|YP_004808240.1| - 8.3 5.8 17.2 11 5.3 0.1 3.7 1 1 2 4 4 4 0 Putative treble-clef, zinc-finger, Zn-binding A2L_zn_ribbon PF08792.5 gi|345005387|ref|YP_004808240.1| - 8.5 5.9 14.8 23 4.5 1.2 3.8 1 1 2 3 3 3 0 A2L zinc ribbon domain DsbD_2 PF13386.1 gi|345005388|ref|YP_004808241.1| - 0.24 11.1 10.7 0.035 13.8 1.1 2.2 2 0 0 2 2 2 0 Cytochrome C biogenesis protein transmembrane region DUF2238 PF09997.4 gi|345005389|ref|YP_004808242.1| - 0.0024 17.2 3.3 0.0056 16.0 2.3 1.7 1 1 0 1 1 1 1 Predicted membrane protein (DUF2238) Ribosomal_L11 PF00298.14 gi|345005390|ref|YP_004808243.1| - 6.8e-21 74.1 0.0 9.9e-21 73.6 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11, RNA binding domain Ribosomal_L11_N PF03946.9 gi|345005390|ref|YP_004808243.1| - 1e-19 69.7 0.2 1.9e-19 68.8 0.1 1.5 2 0 0 2 2 2 1 Ribosomal protein L11, N-terminal domain CRCB PF02537.10 gi|345005391|ref|YP_004808244.1| - 1.8e-17 63.2 12.3 2.1e-17 63.0 8.5 1.0 1 0 0 1 1 1 1 CrcB-like protein CRCB PF02537.10 gi|345005392|ref|YP_004808245.1| - 7.4e-25 87.1 9.1 8.9e-25 86.8 6.3 1.1 1 0 0 1 1 1 1 CrcB-like protein MFS_1 PF07690.11 gi|345005392|ref|YP_004808245.1| - 0.00099 17.9 8.1 0.0011 17.7 5.6 1.0 1 0 0 1 1 1 1 Major Facilitator Superfamily Lysis_S PF04971.7 gi|345005392|ref|YP_004808245.1| - 0.18 11.5 1.0 0.23 11.1 0.0 1.7 2 0 0 2 2 2 0 Lysis protein S Peptidase_M42 PF05343.9 gi|345005393|ref|YP_004808246.1| - 6.8e-79 264.6 3.4 7.8e-79 264.4 2.3 1.0 1 0 0 1 1 1 1 M42 glutamyl aminopeptidase Peptidase_M20 PF01546.23 gi|345005393|ref|YP_004808246.1| - 2.8e-09 36.7 0.7 4e-09 36.2 0.5 1.4 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 Peptidase_M18 PF02127.10 gi|345005393|ref|YP_004808246.1| - 0.01 14.3 0.1 2.5 6.5 0.0 2.7 2 1 0 2 2 2 0 Aminopeptidase I zinc metalloprotease (M18) DUF2342 PF10103.4 gi|345005395|ref|YP_004808248.1| - 2e-84 283.4 0.3 2e-45 155.2 0.0 2.0 1 1 1 2 2 2 2 Uncharacterised conserved protein (DUF2342) Peptidase_MA_2 PF13485.1 gi|345005395|ref|YP_004808248.1| - 0.035 14.1 4.3 0.039 13.9 1.3 2.5 2 1 0 2 2 2 0 Peptidase MA superfamily Pyr_redox_2 PF07992.9 gi|345005396|ref|YP_004808249.1| - 3.1e-27 95.7 5.3 1.1e-11 44.9 0.0 3.1 2 1 1 3 3 3 3 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|345005396|ref|YP_004808249.1| - 5e-20 71.6 0.1 6.4e-17 61.7 0.1 3.4 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|345005396|ref|YP_004808249.1| - 1.2e-10 40.8 3.4 0.045 12.6 0.7 4.2 4 0 0 4 4 4 4 FAD dependent oxidoreductase Pyr_redox_3 PF13738.1 gi|345005396|ref|YP_004808249.1| - 8.4e-08 32.5 0.0 0.0072 16.4 0.0 3.1 1 1 2 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.17 gi|345005396|ref|YP_004808249.1| - 7.4e-07 29.1 0.0 2.4e-06 27.5 0.0 1.8 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain NAD_binding_8 PF13450.1 gi|345005396|ref|YP_004808249.1| - 2.6e-06 27.3 1.8 0.042 13.8 0.0 3.4 4 0 0 4 4 4 2 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.9 gi|345005396|ref|YP_004808249.1| - 6.3e-06 24.9 0.0 0.94 7.8 0.0 3.9 4 0 0 4 4 4 2 HI0933-like protein 3HCDH_N PF02737.13 gi|345005396|ref|YP_004808249.1| - 0.008 15.8 0.1 0.013 15.1 0.1 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Amino_oxidase PF01593.19 gi|345005396|ref|YP_004808249.1| - 0.023 13.7 0.1 4 6.4 0.1 2.4 2 0 0 2 2 2 0 Flavin containing amine oxidoreductase UDPG_MGDP_dh_N PF03721.9 gi|345005396|ref|YP_004808249.1| - 0.078 12.3 0.0 0.15 11.4 0.0 1.4 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain GIDA PF01134.17 gi|345005396|ref|YP_004808249.1| - 0.086 11.6 0.2 0.29 9.9 0.1 1.8 2 0 0 2 2 2 0 Glucose inhibited division protein A Lycopene_cycl PF05834.7 gi|345005396|ref|YP_004808249.1| - 0.2 10.5 0.3 7.1 5.4 0.0 2.5 3 0 0 3 3 3 0 Lycopene cyclase protein DUF1097 PF06496.6 gi|345005397|ref|YP_004808250.1| - 1.2e-22 80.2 16.7 1.4e-22 80.0 11.6 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1097) Polysacc_synt_3 PF13440.1 gi|345005399|ref|YP_004808252.1| - 2.8e-06 26.9 0.2 3.1e-06 26.8 0.2 1.0 1 0 0 1 1 1 1 Polysaccharide biosynthesis protein DUF3487 PF11990.3 gi|345005399|ref|YP_004808252.1| - 7.6e-05 22.0 0.1 8.8e-05 21.8 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3487) UPF0104 PF03706.8 gi|345005399|ref|YP_004808252.1| - 0.0022 17.3 0.1 0.0026 17.1 0.1 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0104) DUF4229 PF14012.1 gi|345005399|ref|YP_004808252.1| - 0.0057 16.5 5.1 0.0084 15.9 3.5 1.4 1 1 0 1 1 1 1 Protein of unknown function (DUF4229) HemY_N PF07219.8 gi|345005399|ref|YP_004808252.1| - 0.0069 15.9 0.4 0.013 15.0 0.2 1.5 1 1 1 2 2 2 1 HemY protein N-terminus FtsX PF02687.16 gi|345005399|ref|YP_004808252.1| - 0.02 14.6 2.8 0.081 12.6 1.9 1.8 1 1 0 1 1 1 0 FtsX-like permease family SNARE_assoc PF09335.6 gi|345005399|ref|YP_004808252.1| - 0.026 14.7 0.1 0.032 14.4 0.0 1.2 1 0 0 1 1 1 0 SNARE associated Golgi protein Apq12 PF12716.2 gi|345005399|ref|YP_004808252.1| - 0.071 12.8 2.6 0.075 12.7 0.2 1.9 2 0 0 2 2 2 0 Nuclear pore assembly and biogenesis HAMP PF00672.20 gi|345005399|ref|YP_004808252.1| - 0.29 11.3 1.8 0.64 10.2 1.2 1.5 1 0 0 1 1 1 0 HAMP domain Antibiotic_NAT PF02522.9 gi|345005400|ref|YP_004808253.1| - 5e-80 268.0 0.0 6.1e-80 267.7 0.0 1.1 1 0 0 1 1 1 1 Aminoglycoside 3-N-acetyltransferase AAA_12 PF13087.1 gi|345005401|ref|YP_004808254.1| - 4.7e-40 137.0 0.0 7.4e-40 136.4 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_11 PF13086.1 gi|345005401|ref|YP_004808254.1| - 5.9e-38 130.7 0.2 1.1e-33 116.8 0.1 3.3 2 1 0 2 2 2 1 AAA domain Dna2 PF08696.6 gi|345005401|ref|YP_004808254.1| - 1e-34 119.6 0.0 4.9e-34 117.4 0.0 1.9 1 1 0 1 1 1 1 DNA replication factor Dna2 AAA_30 PF13604.1 gi|345005401|ref|YP_004808254.1| - 1.6e-16 60.4 5.4 4.1e-16 59.1 1.3 3.2 2 2 0 2 2 2 1 AAA domain AAA_19 PF13245.1 gi|345005401|ref|YP_004808254.1| - 1.3e-14 53.7 3.4 1.3e-12 47.2 0.3 2.6 2 0 0 2 2 2 1 Part of AAA domain PDDEXK_1 PF12705.2 gi|345005401|ref|YP_004808254.1| - 1.3e-14 54.2 0.4 4.3e-14 52.5 0.0 2.1 2 0 0 2 2 2 1 PD-(D/E)XK nuclease superfamily Viral_helicase1 PF01443.13 gi|345005401|ref|YP_004808254.1| - 1.9e-10 40.6 0.0 0.013 14.9 0.0 3.3 3 0 0 3 3 3 3 Viral (Superfamily 1) RNA helicase UvrD-helicase PF00580.16 gi|345005401|ref|YP_004808254.1| - 1.8e-06 27.5 0.2 1.2e-05 24.8 0.1 1.9 1 1 0 2 2 2 1 UvrD/REP helicase N-terminal domain Cas_Cas4 PF01930.12 gi|345005401|ref|YP_004808254.1| - 1.8e-06 27.9 0.0 1.3e-05 25.1 0.0 2.3 1 1 0 1 1 1 1 Domain of unknown function DUF83 AAA_22 PF13401.1 gi|345005401|ref|YP_004808254.1| - 6.6e-05 23.0 0.1 0.00063 19.8 0.0 2.5 3 1 0 3 3 1 1 AAA domain UvrD_C_2 PF13538.1 gi|345005401|ref|YP_004808254.1| - 0.00034 20.7 0.0 0.00097 19.2 0.0 1.8 1 0 0 1 1 1 1 UvrD-like helicase C-terminal domain ResIII PF04851.10 gi|345005401|ref|YP_004808254.1| - 0.00087 19.1 0.0 0.0021 17.9 0.0 1.6 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit DUF2075 PF09848.4 gi|345005401|ref|YP_004808254.1| - 0.001 18.0 0.0 0.0025 16.8 0.0 1.6 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) AAA_16 PF13191.1 gi|345005401|ref|YP_004808254.1| - 0.0012 18.8 0.2 0.0035 17.3 0.1 1.9 1 1 0 1 1 1 1 AAA ATPase domain CbiA PF01656.18 gi|345005401|ref|YP_004808254.1| - 0.004 16.5 0.0 0.0096 15.3 0.0 1.6 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain Helicase_RecD PF05127.9 gi|345005401|ref|YP_004808254.1| - 0.0044 16.6 1.6 0.01 15.4 0.3 2.2 2 1 0 2 2 2 1 Helicase PhoH PF02562.11 gi|345005401|ref|YP_004808254.1| - 0.0097 15.1 0.0 0.038 13.2 0.0 1.9 2 0 0 2 2 2 1 PhoH-like protein MobB PF03205.9 gi|345005401|ref|YP_004808254.1| - 0.011 15.4 0.0 0.13 11.9 0.0 2.6 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B IstB_IS21 PF01695.12 gi|345005401|ref|YP_004808254.1| - 0.012 15.0 0.0 0.051 12.9 0.0 2.0 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA PF00004.24 gi|345005401|ref|YP_004808254.1| - 0.012 15.7 0.0 0.034 14.3 0.0 1.8 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_10 PF12846.2 gi|345005401|ref|YP_004808254.1| - 0.015 14.7 0.0 1.3 8.3 0.0 2.4 1 1 1 2 2 2 0 AAA-like domain AAA_25 PF13481.1 gi|345005401|ref|YP_004808254.1| - 0.024 14.0 0.2 0.38 10.1 0.0 2.8 2 1 0 2 2 2 0 AAA domain AAA_33 PF13671.1 gi|345005401|ref|YP_004808254.1| - 0.049 13.5 0.3 0.29 11.0 0.0 2.5 3 0 0 3 3 2 0 AAA domain SRP54 PF00448.17 gi|345005401|ref|YP_004808254.1| - 0.07 12.5 0.0 0.22 10.9 0.0 1.8 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain Mg_chelatase PF01078.16 gi|345005401|ref|YP_004808254.1| - 0.074 12.2 0.0 0.13 11.4 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI PIF1 PF05970.9 gi|345005401|ref|YP_004808254.1| - 0.095 11.6 0.0 1.1 8.1 0.0 2.0 2 0 0 2 2 2 0 PIF1-like helicase NTP_transferase PF00483.18 gi|345005402|ref|YP_004808255.1| - 3.4e-43 147.7 0.0 4.3e-43 147.3 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.2 gi|345005402|ref|YP_004808255.1| - 3.9e-20 72.5 0.0 5.6e-20 72.0 0.0 1.3 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep PF00132.19 gi|345005402|ref|YP_004808255.1| - 8.6e-13 47.1 28.4 0.00048 19.5 1.2 4.9 2 1 2 4 4 4 4 Bacterial transferase hexapeptide (six repeats) IspD PF01128.14 gi|345005402|ref|YP_004808255.1| - 8.7e-09 35.2 0.1 2e-08 34.0 0.0 1.6 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Hexapep_2 PF14602.1 gi|345005402|ref|YP_004808255.1| - 4.5e-05 22.9 29.0 0.01 15.4 1.7 4.5 3 1 0 4 4 4 2 Hexapeptide repeat of succinyl-transferase SIS PF01380.17 gi|345005403|ref|YP_004808256.1| - 6.3e-38 129.3 0.4 2.2e-21 75.8 0.3 2.4 2 0 0 2 2 2 2 SIS domain GATase_6 PF13522.1 gi|345005403|ref|YP_004808256.1| - 2.7e-21 75.8 0.0 7.1e-21 74.5 0.0 1.7 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_7 PF13537.1 gi|345005403|ref|YP_004808256.1| - 1.1e-15 57.5 0.0 1.8e-15 56.7 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_2 PF00310.16 gi|345005403|ref|YP_004808256.1| - 4.9e-14 51.8 0.4 5.7e-11 41.7 0.0 2.4 2 1 0 2 2 2 2 Glutamine amidotransferases class-II GATase_4 PF13230.1 gi|345005403|ref|YP_004808256.1| - 0.02 13.5 0.1 0.034 12.8 0.0 1.2 1 0 0 1 1 1 0 Glutamine amidotransferases class-II UPF0175 PF03683.8 gi|345005404|ref|YP_004808257.1| - 1.3e-17 63.0 0.0 1.6e-17 62.7 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0175) Y1_Tnp PF01797.11 gi|345005406|ref|YP_004808259.1| - 2.8e-31 107.9 0.0 1.3e-28 99.2 0.0 2.0 2 0 0 2 2 2 2 Transposase IS200 like OrfB_IS605 PF01385.14 gi|345005407|ref|YP_004808260.1| - 1.6e-61 207.6 0.0 2.7e-61 206.8 0.0 1.3 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|345005407|ref|YP_004808260.1| - 1.2e-14 53.6 0.8 1.2e-14 53.6 0.6 1.8 2 0 0 2 2 2 1 Putative transposase DNA-binding domain Bac_transf PF02397.11 gi|345005408|ref|YP_004808261.1| - 3.8e-59 198.9 0.0 5.7e-59 198.3 0.0 1.2 1 0 0 1 1 1 1 Bacterial sugar transferase OrfB_IS605 PF01385.14 gi|345005409|ref|YP_004808262.1| - 1.1e-23 83.8 0.5 1.6e-23 83.2 0.3 1.3 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|345005409|ref|YP_004808262.1| - 2.1e-17 62.5 0.3 4.3e-17 61.5 0.2 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain HTH_OrfB_IS605 PF12323.3 gi|345005409|ref|YP_004808262.1| - 2.2e-05 23.6 0.1 5.3e-05 22.4 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain Zn_Tnp_IS91 PF14319.1 gi|345005409|ref|YP_004808262.1| - 0.0072 15.8 1.4 0.019 14.4 0.9 1.6 1 0 0 1 1 1 1 Transposase zinc-binding domain DZR PF12773.2 gi|345005409|ref|YP_004808262.1| - 0.015 15.1 1.4 0.028 14.2 0.9 1.4 1 0 0 1 1 1 0 Double zinc ribbon UPF0547 PF10571.4 gi|345005409|ref|YP_004808262.1| - 0.041 13.5 1.1 0.67 9.6 0.1 2.3 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zf-ribbon_3 PF13248.1 gi|345005409|ref|YP_004808262.1| - 0.05 12.8 0.8 1.8 7.8 0.0 2.3 2 0 0 2 2 2 0 zinc-ribbon domain DUF1777 PF08648.7 gi|345005409|ref|YP_004808262.1| - 0.13 11.9 4.4 2.6 7.7 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF1777) Snf7 PF03357.16 gi|345005409|ref|YP_004808262.1| - 0.28 10.5 1.9 5.6 6.3 1.7 2.1 2 0 0 2 2 2 0 Snf7 DUF1610 PF07754.6 gi|345005409|ref|YP_004808262.1| - 6.8 6.9 6.4 2.9 8.0 0.2 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) NTP_transferase PF00483.18 gi|345005410|ref|YP_004808263.1| - 2.8e-44 151.2 0.0 3.1e-44 151.1 0.0 1.0 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.2 gi|345005410|ref|YP_004808263.1| - 1.1e-14 54.8 0.0 1.2e-14 54.6 0.0 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.14 gi|345005410|ref|YP_004808263.1| - 9.8e-06 25.2 0.0 5.5e-05 22.8 0.0 2.0 1 1 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CARDB PF07705.6 gi|345005411|ref|YP_004808264.1| - 2.5e-52 175.1 55.8 1.5e-08 34.5 0.4 10.4 9 1 1 10 10 10 10 CARDB Transglut_C PF00927.17 gi|345005411|ref|YP_004808264.1| - 1.3e-12 47.6 12.5 0.82 9.7 0.0 9.7 10 1 0 10 10 10 3 Transglutaminase family, C-terminal ig like domain DUF756 PF05506.7 gi|345005411|ref|YP_004808264.1| - 1.5e-08 34.9 24.3 0.019 15.4 0.1 10.0 11 0 0 11 11 10 2 Domain of unknown function (DUF756) DUF11 PF01345.13 gi|345005411|ref|YP_004808264.1| - 1.6e-05 24.8 71.3 0.034 14.2 0.9 9.8 9 0 0 9 9 9 6 Domain of unknown function DUF11 4HBT PF03061.17 gi|345005411|ref|YP_004808264.1| - 9.4e-05 22.4 10.7 11 6.2 0.0 6.8 6 0 0 6 6 6 2 Thioesterase superfamily Filamin PF00630.14 gi|345005411|ref|YP_004808264.1| - 0.00028 21.4 15.2 0.22 12.1 2.2 7.4 5 2 0 5 5 5 1 Filamin/ABP280 repeat Fn3-like PF14310.1 gi|345005411|ref|YP_004808264.1| - 0.00054 19.8 21.2 3.7 7.5 0.0 10.6 11 1 1 12 12 12 1 Fibronectin type III-like domain DUF1616 PF07760.6 gi|345005411|ref|YP_004808264.1| - 0.018 14.2 10.1 9.3 5.2 0.0 6.1 8 0 0 8 8 8 0 Protein of unknown function (DUF1616) Y_Y_Y PF07495.8 gi|345005411|ref|YP_004808264.1| - 0.031 14.0 0.0 0.91 9.3 0.0 3.3 3 0 0 3 3 3 0 Y_Y_Y domain FliW PF02623.10 gi|345005411|ref|YP_004808264.1| - 0.13 11.7 0.0 73 2.9 0.0 4.7 7 0 0 7 7 7 0 FliW protein DUF1573 PF07610.6 gi|345005411|ref|YP_004808264.1| - 0.25 10.9 11.4 22 4.7 0.0 7.6 8 0 0 8 8 8 0 Protein of unknown function (DUF1573) DUF4131 PF13567.1 gi|345005411|ref|YP_004808264.1| - 1.3 8.3 4.4 40 3.5 0.0 4.1 3 2 1 4 4 4 0 Domain of unknown function (DUF4131) DUF1034 PF06280.7 gi|345005411|ref|YP_004808264.1| - 2.6 8.4 51.6 9.1 6.7 0.8 10.7 3 2 7 11 11 11 0 Fn3-like domain (DUF1034) STT3 PF02516.9 gi|345005413|ref|YP_004808266.1| - 0.00036 19.6 8.2 0.0004 19.4 5.7 1.1 1 0 0 1 1 1 1 Oligosaccharyl transferase STT3 subunit CarboxypepD_reg PF13620.1 gi|345005415|ref|YP_004808268.1| - 2.4 8.2 13.1 0.72 9.9 4.9 2.6 1 1 1 2 2 2 0 Carboxypeptidase regulatory-like domain Amidase PF01425.16 gi|345005416|ref|YP_004808269.1| - 5.3e-09 35.4 0.2 0.00047 19.1 0.0 2.1 1 1 1 2 2 2 2 Amidase DUF2080 PF09853.4 gi|345005418|ref|YP_004808271.1| - 0.019 14.6 0.0 0.023 14.4 0.0 1.1 1 0 0 1 1 1 0 Putative transposon-encoded protein (DUF2080) Tubulin PF00091.20 gi|345005419|ref|YP_004808272.1| - 1.1e-24 87.5 0.2 3.6e-24 85.7 0.0 1.9 2 1 0 2 2 2 1 Tubulin/FtsZ family, GTPase domain CofC PF01983.11 gi|345005420|ref|YP_004808273.1| - 9.5e-40 135.8 0.0 1.1e-39 135.6 0.0 1.0 1 0 0 1 1 1 1 Guanylyl transferase CofC like NTP_transf_3 PF12804.2 gi|345005420|ref|YP_004808273.1| - 0.015 15.4 1.3 0.038 14.0 0.9 1.6 1 1 0 1 1 1 0 MobA-like NTP transferase domain Radical_SAM PF04055.16 gi|345005421|ref|YP_004808274.1| - 2.4e-16 60.3 0.0 4.2e-16 59.5 0.0 1.4 1 0 0 1 1 1 1 Radical SAM superfamily AAA_26 PF13500.1 gi|345005421|ref|YP_004808274.1| - 0.13 11.8 0.0 0.3 10.6 0.0 1.4 1 1 0 1 1 1 0 AAA domain MS_channel PF00924.13 gi|345005423|ref|YP_004808276.1| - 1.8e-46 158.0 0.0 2.5e-46 157.5 0.0 1.2 1 0 0 1 1 1 1 Mechanosensitive ion channel Aminotran_1_2 PF00155.16 gi|345005424|ref|YP_004808277.1| - 1.7e-68 231.2 0.0 2e-68 231.0 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.16 gi|345005424|ref|YP_004808277.1| - 5.9e-09 35.4 0.0 9.4e-09 34.8 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase Aminotran_5 PF00266.14 gi|345005424|ref|YP_004808277.1| - 0.00063 18.5 0.0 0.0025 16.6 0.0 1.7 2 0 0 2 2 2 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.12 gi|345005424|ref|YP_004808277.1| - 0.0019 17.3 0.4 0.0034 16.4 0.3 1.3 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Radical_SAM PF04055.16 gi|345005425|ref|YP_004808278.1| - 3.4e-11 43.6 0.0 8.2e-11 42.3 0.0 1.7 2 0 0 2 2 2 1 Radical SAM superfamily Spore-coat_CotZ PF10612.4 gi|345005425|ref|YP_004808278.1| - 0.055 13.3 0.2 0.095 12.5 0.1 1.3 1 0 0 1 1 1 0 Spore coat protein Z FAD-oxidase_C PF02913.14 gi|345005426|ref|YP_004808279.1| - 5.2e-59 199.5 0.1 7.9e-59 198.9 0.0 1.3 1 0 0 1 1 1 1 FAD linked oxidases, C-terminal domain FAD_binding_4 PF01565.18 gi|345005426|ref|YP_004808279.1| - 3e-38 130.4 0.9 6.5e-38 129.3 0.6 1.6 1 0 0 1 1 1 1 FAD binding domain AP_endonuc_2 PF01261.19 gi|345005426|ref|YP_004808279.1| - 0.022 14.0 0.1 0.11 11.7 0.0 2.0 2 0 0 2 2 2 0 Xylose isomerase-like TIM barrel Autoind_bind PF03472.10 gi|345005426|ref|YP_004808279.1| - 0.054 12.7 0.0 0.11 11.7 0.0 1.4 1 0 0 1 1 1 0 Autoinducer binding domain SAICAR_synt PF01259.13 gi|345005427|ref|YP_004808280.1| - 1.1e-12 47.6 0.0 2.6e-12 46.3 0.0 1.5 1 1 0 1 1 1 1 SAICAR synthetase VRP1 PF03538.9 gi|345005427|ref|YP_004808280.1| - 0.2 10.6 0.0 0.3 10.0 0.0 1.2 1 0 0 1 1 1 0 Salmonella virulence plasmid 28.1kDa A protein PurS PF02700.9 gi|345005428|ref|YP_004808281.1| - 3.4e-23 81.3 0.0 3.8e-23 81.2 0.0 1.0 1 0 0 1 1 1 1 Phosphoribosylformylglycinamidine (FGAM) synthase GATase_5 PF13507.1 gi|345005429|ref|YP_004808282.1| - 2.2e-43 148.0 0.0 2.7e-43 147.7 0.0 1.0 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain GATase PF00117.23 gi|345005429|ref|YP_004808282.1| - 9.4e-07 28.4 0.0 1.2e-06 28.1 0.0 1.3 1 1 0 1 1 1 1 Glutamine amidotransferase class-I GATase_3 PF07685.9 gi|345005429|ref|YP_004808282.1| - 1.4e-05 24.7 0.0 2.4e-05 23.9 0.0 1.3 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain DJ-1_PfpI PF01965.19 gi|345005429|ref|YP_004808282.1| - 0.0049 16.3 0.1 0.0086 15.5 0.0 1.4 1 1 0 1 1 1 1 DJ-1/PfpI family DUF4066 PF13278.1 gi|345005429|ref|YP_004808282.1| - 0.02 14.1 0.0 0.027 13.7 0.0 1.2 1 0 0 1 1 1 0 Putative amidotransferase Peptidase_C26 PF07722.8 gi|345005429|ref|YP_004808282.1| - 0.037 13.4 0.1 0.067 12.6 0.1 1.4 1 1 0 1 1 1 0 Peptidase C26 Radical_SAM PF04055.16 gi|345005430|ref|YP_004808283.1| - 0.00012 22.2 0.4 0.00024 21.2 0.3 1.5 1 1 0 1 1 1 1 Radical SAM superfamily AgrD PF05931.6 gi|345005430|ref|YP_004808283.1| - 0.11 12.1 0.0 0.26 10.9 0.0 1.7 1 0 0 1 1 1 0 Staphylococcal AgrD protein UCR_hinge PF02320.11 gi|345005430|ref|YP_004808283.1| - 4.4 7.3 11.3 0.23 11.4 0.4 3.3 4 0 0 4 4 4 0 Ubiquinol-cytochrome C reductase hinge protein VanZ PF04892.7 gi|345005431|ref|YP_004808284.1| - 2.4e-11 43.7 0.4 3.2e-11 43.3 0.3 1.2 1 0 0 1 1 1 1 VanZ like family AFOR_C PF01314.13 gi|345005432|ref|YP_004808285.1| - 4.3e-122 407.4 2.8 5.2e-122 407.2 1.9 1.1 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.10 gi|345005432|ref|YP_004808285.1| - 1.8e-75 252.7 0.2 3e-75 251.9 0.1 1.3 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain DUF2244 PF10003.4 gi|345005433|ref|YP_004808286.1| - 0.017 14.5 4.0 0.021 14.2 2.8 1.1 1 0 0 1 1 1 0 Integral membrane protein (DUF2244) DUF4131 PF13567.1 gi|345005433|ref|YP_004808286.1| - 0.58 9.5 3.0 0.7 9.2 2.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) FAM74 PF15026.1 gi|345005434|ref|YP_004808287.1| - 0.12 12.0 0.5 0.14 11.7 0.3 1.2 1 0 0 1 1 1 0 FAM74 protein ThiS PF02597.15 gi|345005435|ref|YP_004808288.1| - 5.2e-17 62.0 0.3 1.7e-16 60.3 0.1 1.9 2 0 0 2 2 2 1 ThiS family TrkA_C PF02080.16 gi|345005435|ref|YP_004808288.1| - 0.013 15.0 0.1 0.069 12.7 0.1 2.0 2 0 0 2 2 2 0 TrkA-C domain Cupin_2 PF07883.6 gi|345005435|ref|YP_004808288.1| - 0.024 14.1 0.0 0.057 12.9 0.0 1.6 1 0 0 1 1 1 0 Cupin domain Aldo_ket_red PF00248.16 gi|345005436|ref|YP_004808289.1| - 7.2e-56 189.0 0.4 8.8e-56 188.7 0.3 1.1 1 0 0 1 1 1 1 Aldo/keto reductase family RHH_1 PF01402.16 gi|345005437|ref|YP_004808290.1| - 0.056 13.3 0.0 0.077 12.9 0.0 1.2 1 0 0 1 1 1 0 Ribbon-helix-helix protein, copG family DNA_pol_alpha_N PF12254.3 gi|345005437|ref|YP_004808290.1| - 0.12 12.2 0.2 0.16 11.7 0.1 1.2 1 0 0 1 1 1 0 DNA polymerase alpha subunit p180 N terminal Cupin_2 PF07883.6 gi|345005438|ref|YP_004808291.1| - 1.7e-10 40.2 1.7 2.6e-10 39.6 1.1 1.3 1 0 0 1 1 1 1 Cupin domain DUF1637 PF07847.7 gi|345005438|ref|YP_004808291.1| - 0.003 16.9 0.0 0.0031 16.9 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1637) CDO_I PF05995.7 gi|345005438|ref|YP_004808291.1| - 0.0097 15.0 0.1 0.012 14.7 0.1 1.2 1 0 0 1 1 1 1 Cysteine dioxygenase type I MannoseP_isomer PF01050.13 gi|345005438|ref|YP_004808291.1| - 0.071 12.7 0.0 0.085 12.4 0.0 1.1 1 0 0 1 1 1 0 Mannose-6-phosphate isomerase CarboxypepD_reg PF13620.1 gi|345005439|ref|YP_004808292.1| - 0.0013 18.7 9.7 0.1 12.6 1.8 2.8 2 1 0 2 2 2 2 Carboxypeptidase regulatory-like domain Membrane_bind PF14564.1 gi|345005439|ref|YP_004808292.1| - 0.0021 18.1 2.5 0.18 11.9 0.3 2.3 2 0 0 2 2 2 2 Membrane binding MG1 PF11974.3 gi|345005439|ref|YP_004808292.1| - 0.0087 16.5 3.5 1.3 9.5 0.1 2.5 2 0 0 2 2 2 2 Alpha-2-macroglobulin MG1 domain ComGG PF14173.1 gi|345005439|ref|YP_004808292.1| - 0.014 15.5 4.1 4.7 7.4 0.5 3.3 2 1 1 3 3 3 0 ComG operon protein 7 FixH PF05751.6 gi|345005439|ref|YP_004808292.1| - 0.31 10.8 5.8 1.7 8.4 0.3 2.8 1 1 1 2 2 2 0 FixH Cu_amine_oxidN1 PF07833.6 gi|345005439|ref|YP_004808292.1| - 0.68 10.3 9.5 4.6 7.6 2.0 3.1 1 1 1 2 2 2 0 Copper amine oxidase N-terminal domain Lipocalin_2 PF08212.7 gi|345005439|ref|YP_004808292.1| - 9.7 5.9 7.5 1.8 8.3 0.1 2.7 3 1 0 3 3 3 0 Lipocalin-like domain GMP_synt_C PF00958.17 gi|345005441|ref|YP_004808294.1| - 1.2e-30 105.1 0.1 5.5e-30 102.9 0.0 2.1 2 1 1 3 3 3 1 GMP synthase C terminal domain NAD_synthase PF02540.12 gi|345005441|ref|YP_004808294.1| - 1.1e-09 37.5 0.0 8.2e-07 28.1 0.0 2.2 2 0 0 2 2 2 2 NAD synthase Asn_synthase PF00733.16 gi|345005441|ref|YP_004808294.1| - 2.3e-05 24.0 0.0 0.00016 21.2 0.0 2.0 2 1 0 2 2 2 1 Asparagine synthase tRNA_Me_trans PF03054.11 gi|345005441|ref|YP_004808294.1| - 2.9e-05 22.7 0.0 0.00096 17.8 0.0 2.1 2 0 0 2 2 2 1 tRNA methyl transferase ThiI PF02568.9 gi|345005441|ref|YP_004808294.1| - 0.0045 16.4 0.0 0.012 15.0 0.0 1.7 1 1 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) QueC PF06508.8 gi|345005441|ref|YP_004808294.1| - 0.012 14.9 0.0 0.024 13.9 0.0 1.5 2 0 0 2 2 2 0 Queuosine biosynthesis protein QueC PAPS_reduct PF01507.14 gi|345005441|ref|YP_004808294.1| - 0.021 14.6 0.0 0.033 13.9 0.0 1.4 1 0 0 1 1 1 0 Phosphoadenosine phosphosulfate reductase family Arginosuc_synth PF00764.14 gi|345005441|ref|YP_004808294.1| - 0.075 12.0 0.0 0.11 11.5 0.0 1.2 1 0 0 1 1 1 0 Arginosuccinate synthase RimM PF01782.13 gi|345005441|ref|YP_004808294.1| - 0.16 11.9 1.4 15 5.6 0.0 3.1 3 0 0 3 3 3 0 RimM N-terminal domain CTP_synth_N PF06418.9 gi|345005442|ref|YP_004808295.1| - 2.3e-127 423.7 0.0 3.3e-127 423.3 0.0 1.1 1 0 0 1 1 1 1 CTP synthase N-terminus GATase PF00117.23 gi|345005442|ref|YP_004808295.1| - 3.5e-51 173.4 0.0 5.3e-51 172.8 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferase class-I CbiA PF01656.18 gi|345005442|ref|YP_004808295.1| - 1.1e-08 34.7 0.0 2e-08 33.9 0.0 1.4 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain Peptidase_C26 PF07722.8 gi|345005442|ref|YP_004808295.1| - 3.6e-08 33.1 0.0 2.2e-07 30.5 0.0 2.1 1 1 1 2 2 2 1 Peptidase C26 GATase_3 PF07685.9 gi|345005442|ref|YP_004808295.1| - 0.046 13.3 0.0 0.093 12.3 0.0 1.5 1 0 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain Rieske PF00355.21 gi|345005443|ref|YP_004808296.1| - 6.1e-07 28.9 0.1 1.2e-06 27.9 0.1 1.4 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain ThiS PF02597.15 gi|345005445|ref|YP_004808298.1| - 3.5e-16 59.3 0.1 3.9e-16 59.2 0.1 1.0 1 0 0 1 1 1 1 ThiS family TrkA_C PF02080.16 gi|345005446|ref|YP_004808299.1| - 2.7e-05 23.6 0.3 7.9e-05 22.1 0.2 1.8 1 0 0 1 1 1 1 TrkA-C domain SKG6 PF08693.5 gi|345005446|ref|YP_004808299.1| - 0.04 13.2 2.4 0.12 11.7 1.6 1.8 1 0 0 1 1 1 0 Transmembrane alpha-helix domain MASE1 PF05231.9 gi|345005446|ref|YP_004808299.1| - 0.21 10.5 5.6 0.27 10.2 3.9 1.1 1 0 0 1 1 1 0 MASE1 TrkA_C PF02080.16 gi|345005447|ref|YP_004808300.1| - 2.7e-11 42.8 0.1 7.9e-11 41.4 0.0 1.9 1 0 0 1 1 1 1 TrkA-C domain NfeD PF01957.13 gi|345005447|ref|YP_004808300.1| - 0.044 13.9 2.6 0.06 13.4 1.2 1.6 1 1 0 1 1 1 0 NfeD-like C-terminal, partner-binding TrkA_N PF02254.13 gi|345005448|ref|YP_004808301.1| - 1.6e-30 105.4 0.9 2.6e-30 104.7 0.6 1.3 1 0 0 1 1 1 1 TrkA-N domain Ion_trans_2 PF07885.11 gi|345005448|ref|YP_004808301.1| - 3e-14 52.5 4.1 3e-14 52.5 2.9 2.1 2 0 0 2 2 2 1 Ion channel Ion_trans PF00520.26 gi|345005448|ref|YP_004808301.1| - 0.00059 19.1 0.8 0.00059 19.1 0.5 1.8 1 1 0 2 2 2 1 Ion transport protein Saccharop_dh PF03435.13 gi|345005448|ref|YP_004808301.1| - 0.013 14.5 0.1 0.021 13.7 0.1 1.3 1 0 0 1 1 1 0 Saccharopine dehydrogenase Aldolase PF01081.14 gi|345005448|ref|YP_004808301.1| - 0.013 14.6 0.1 0.023 13.8 0.1 1.4 1 0 0 1 1 1 0 KDPG and KHG aldolase IRK PF01007.15 gi|345005448|ref|YP_004808301.1| - 0.034 12.9 0.1 0.043 12.6 0.0 1.2 1 0 0 1 1 1 0 Inward rectifier potassium channel Peptidase_A24 PF01478.13 gi|345005448|ref|YP_004808301.1| - 1.4 9.1 8.0 5.9 7.1 5.5 2.1 1 1 0 1 1 1 0 Type IV leader peptidase family Usp PF00582.21 gi|345005449|ref|YP_004808302.1| - 1.1e-12 48.3 12.5 6.8e-09 36.0 2.0 3.6 3 1 0 3 3 3 2 Universal stress protein family HPP PF04982.8 gi|345005449|ref|YP_004808302.1| - 0.00019 21.2 8.9 0.00047 19.9 6.1 1.8 1 1 0 1 1 1 1 HPP family PNP_UDP_1 PF01048.15 gi|345005450|ref|YP_004808303.1| - 3.1e-46 157.2 2.8 3.6e-46 157.0 1.9 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily DUF63 PF01889.12 gi|345005452|ref|YP_004808305.1| - 7.8e-20 72.0 0.1 1.1e-19 71.5 0.1 1.1 1 0 0 1 1 1 1 Membrane protein of unknown function DUF63 DeoC PF01791.4 gi|345005453|ref|YP_004808306.1| - 2.1e-34 118.8 4.9 1.1e-19 70.7 1.4 2.1 2 0 0 2 2 2 2 DeoC/LacD family aldolase DUF1116 PF06545.6 gi|345005453|ref|YP_004808306.1| - 0.078 12.0 0.0 0.25 10.3 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF1116) Ribosomal_S6e PF01092.14 gi|345005454|ref|YP_004808307.1| - 2.3e-34 117.7 0.1 2.9e-34 117.4 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein S6e DBD_Tnp_Hermes PF10683.4 gi|345005458|ref|YP_004808311.1| - 0.057 12.8 0.2 0.13 11.7 0.0 1.6 2 0 0 2 2 2 0 Hermes transposase DNA-binding domain DHHA1 PF02272.14 gi|345005459|ref|YP_004808312.1| - 0.00061 19.4 0.3 0.0023 17.6 0.2 2.0 1 0 0 1 1 1 1 DHHA1 domain tRNA_synt_1c_R1 PF04558.10 gi|345005459|ref|YP_004808312.1| - 0.12 11.8 0.1 4 6.9 0.0 2.3 2 0 0 2 2 2 0 Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1 Usp PF00582.21 gi|345005460|ref|YP_004808313.1| - 9.9e-33 113.2 6.3 1.1e-32 113.1 4.4 1.0 1 0 0 1 1 1 1 Universal stress protein family DUF3280 PF11684.3 gi|345005460|ref|YP_004808313.1| - 0.002 18.3 2.0 0.004 17.3 0.7 1.7 1 1 1 2 2 2 1 Protein of unknown function (DUF2380) ETF PF01012.16 gi|345005460|ref|YP_004808313.1| - 0.081 12.6 5.0 0.15 11.7 3.4 1.6 1 1 0 1 1 1 0 Electron transfer flavoprotein domain Usp PF00582.21 gi|345005461|ref|YP_004808314.1| - 8.6e-17 61.6 5.1 1.1e-16 61.2 3.6 1.2 1 0 0 1 1 1 1 Universal stress protein family Acetyltransf_1 PF00583.19 gi|345005462|ref|YP_004808315.1| - 2.3e-17 62.7 0.1 3.3e-17 62.2 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_3 PF13302.1 gi|345005462|ref|YP_004808315.1| - 1.1e-09 38.5 0.0 1.4e-09 38.2 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|345005462|ref|YP_004808315.1| - 7.2e-08 32.5 0.0 9e-08 32.2 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|345005462|ref|YP_004808315.1| - 1.3e-06 28.2 0.0 2.8e-06 27.2 0.0 1.6 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|345005462|ref|YP_004808315.1| - 1.6e-06 27.7 0.0 2.7e-06 27.0 0.0 1.2 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_7 PF13508.1 gi|345005462|ref|YP_004808315.1| - 3.6e-05 23.8 0.0 6.8e-05 22.9 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|345005462|ref|YP_004808315.1| - 8.6e-05 22.5 0.0 0.00011 22.1 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|345005462|ref|YP_004808315.1| - 0.041 13.7 0.0 0.068 13.0 0.0 1.4 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase Acetyltransf_8 PF13523.1 gi|345005462|ref|YP_004808315.1| - 0.065 13.1 0.0 0.11 12.3 0.0 1.3 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_6 PF13480.1 gi|345005462|ref|YP_004808315.1| - 0.1 12.5 0.0 0.16 11.8 0.0 1.3 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Usp PF00582.21 gi|345005463|ref|YP_004808316.1| - 3.7e-12 46.6 1.1 7.2e-12 45.6 0.7 1.4 1 1 0 1 1 1 1 Universal stress protein family zf-ribbon_3 PF13248.1 gi|345005464|ref|YP_004808317.1| - 0.027 13.6 0.6 0.052 12.7 0.4 1.5 1 0 0 1 1 1 0 zinc-ribbon domain UPF0547 PF10571.4 gi|345005464|ref|YP_004808317.1| - 0.074 12.7 0.5 0.13 12.0 0.3 1.4 1 0 0 1 1 1 0 Uncharacterised protein family UPF0547 zinc_ribbon_5 PF13719.1 gi|345005464|ref|YP_004808317.1| - 0.1 12.2 0.1 0.23 11.0 0.1 1.5 1 0 0 1 1 1 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|345005464|ref|YP_004808317.1| - 0.14 11.9 0.2 0.29 10.8 0.1 1.5 1 0 0 1 1 1 0 zinc-ribbon domain Peptidase_M29 PF02073.10 gi|345005465|ref|YP_004808318.1| - 2.1e-111 372.5 3.5 2.3e-111 372.3 2.4 1.0 1 0 0 1 1 1 1 Thermophilic metalloprotease (M29) X PF00739.14 gi|345005465|ref|YP_004808318.1| - 0.067 13.1 0.0 0.15 11.9 0.0 1.6 1 0 0 1 1 1 0 Trans-activation protein X Amidohydro_1 PF01979.15 gi|345005466|ref|YP_004808319.1| - 1.3e-19 71.0 2.0 3e-19 69.8 1.4 1.6 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_5 PF13594.1 gi|345005466|ref|YP_004808319.1| - 2e-11 43.5 0.2 1.1e-10 41.2 0.0 2.4 2 0 0 2 2 2 1 Amidohydrolase Amidohydro_3 PF07969.6 gi|345005466|ref|YP_004808319.1| - 3.9e-08 32.9 9.7 6.8e-07 28.8 4.0 2.4 2 0 0 2 2 2 2 Amidohydrolase family Amidohydro_4 PF13147.1 gi|345005466|ref|YP_004808319.1| - 3.2e-07 30.6 26.5 4.2e-07 30.2 14.6 2.9 2 1 0 2 2 2 1 Amidohydrolase SinI PF08671.5 gi|345005466|ref|YP_004808319.1| - 0.14 11.5 3.4 4.9 6.6 0.0 2.6 3 0 0 3 3 3 0 Anti-repressor SinI NAD_binding_2 PF03446.10 gi|345005467|ref|YP_004808320.1| - 2.9e-36 124.7 0.0 4.1e-36 124.2 0.0 1.2 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase 6PGD PF00393.14 gi|345005467|ref|YP_004808320.1| - 1e-22 80.6 0.0 1.4e-22 80.2 0.0 1.2 1 0 0 1 1 1 1 6-phosphogluconate dehydrogenase, C-terminal domain F420_oxidored PF03807.12 gi|345005467|ref|YP_004808320.1| - 1.1e-06 29.0 0.0 1.9e-06 28.2 0.0 1.4 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent TrkA_N PF02254.13 gi|345005467|ref|YP_004808320.1| - 0.00012 22.0 0.3 0.00031 20.7 0.0 1.8 2 0 0 2 2 2 1 TrkA-N domain 3HCDH_N PF02737.13 gi|345005467|ref|YP_004808320.1| - 0.0002 21.0 0.0 0.00027 20.6 0.0 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_11 PF14833.1 gi|345005467|ref|YP_004808320.1| - 0.0006 19.8 0.0 0.0068 16.4 0.0 2.6 2 1 0 2 2 2 1 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 2-Hacid_dh_C PF02826.14 gi|345005467|ref|YP_004808320.1| - 0.0019 17.3 0.0 0.0029 16.8 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_10 PF13460.1 gi|345005467|ref|YP_004808320.1| - 0.009 16.0 0.4 0.21 11.5 0.0 2.9 3 1 1 4 4 4 1 NADH(P)-binding Methyltransf_18 PF12847.2 gi|345005467|ref|YP_004808320.1| - 0.019 15.5 0.0 0.047 14.2 0.0 1.7 1 0 0 1 1 1 0 Methyltransferase domain UDPG_MGDP_dh_N PF03721.9 gi|345005467|ref|YP_004808320.1| - 0.048 13.0 0.0 0.11 11.8 0.0 1.6 2 0 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain DapB_N PF01113.15 gi|345005467|ref|YP_004808320.1| - 0.12 12.2 0.8 0.59 10.0 0.5 2.0 1 1 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus Ferritin_2 PF13668.1 gi|345005468|ref|YP_004808321.1| - 8.1e-38 129.4 1.8 1.5e-37 128.6 1.3 1.4 1 0 0 1 1 1 1 Ferritin-like domain NESP55 PF06390.7 gi|345005468|ref|YP_004808321.1| - 0.54 9.5 13.0 0.92 8.8 9.0 1.4 1 0 0 1 1 1 0 Neuroendocrine-specific golgi protein P55 (NESP55) DREPP PF05558.7 gi|345005468|ref|YP_004808321.1| - 1.1 9.0 11.9 2 8.1 8.2 1.4 1 0 0 1 1 1 0 DREPP plasma membrane polypeptide ABC2_membrane_2 PF12679.2 gi|345005469|ref|YP_004808322.1| - 3.1e-45 154.1 12.4 3.6e-45 153.9 8.6 1.0 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|345005469|ref|YP_004808322.1| - 2.3e-16 59.6 11.3 2.3e-16 59.6 7.9 1.9 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane PF01061.19 gi|345005469|ref|YP_004808322.1| - 9.1e-10 38.0 11.5 9.1e-10 38.0 8.0 2.1 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_5 PF13346.1 gi|345005469|ref|YP_004808322.1| - 1.6e-06 27.6 3.4 1.6e-06 27.6 2.3 1.7 3 0 0 3 3 3 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.2 gi|345005469|ref|YP_004808322.1| - 5.9e-06 25.5 14.5 5.9e-06 25.5 10.1 1.5 1 1 0 1 1 1 1 ABC-2 family transporter protein CcmB PF03379.8 gi|345005469|ref|YP_004808322.1| - 0.0022 17.2 2.7 0.0022 17.2 1.9 2.4 2 1 0 2 2 2 1 CcmB protein ABC_tran PF00005.22 gi|345005470|ref|YP_004808323.1| - 1.4e-26 93.4 0.0 2.6e-26 92.5 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|345005470|ref|YP_004808323.1| - 1.7e-11 44.6 0.0 3.4e-07 30.5 0.0 2.1 1 1 1 2 2 2 2 AAA domain AAA_30 PF13604.1 gi|345005470|ref|YP_004808323.1| - 0.00069 19.2 0.1 0.013 15.0 0.0 2.5 2 1 0 2 2 2 1 AAA domain MMR_HSR1 PF01926.18 gi|345005470|ref|YP_004808323.1| - 0.0013 18.6 0.1 0.29 11.0 0.0 2.4 2 0 0 2 2 2 1 50S ribosome-binding GTPase DUF4162 PF13732.1 gi|345005470|ref|YP_004808323.1| - 0.0023 18.3 0.0 0.0038 17.7 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_29 PF13555.1 gi|345005470|ref|YP_004808323.1| - 0.0064 16.0 0.0 0.014 14.8 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain ArgK PF03308.11 gi|345005470|ref|YP_004808323.1| - 0.0073 15.1 0.1 0.014 14.1 0.1 1.4 1 0 0 1 1 1 1 ArgK protein DUF258 PF03193.11 gi|345005470|ref|YP_004808323.1| - 0.014 14.5 0.0 0.028 13.6 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_10 PF12846.2 gi|345005470|ref|YP_004808323.1| - 0.014 14.8 0.0 0.25 10.7 0.0 2.1 2 0 0 2 2 2 0 AAA-like domain AAA_23 PF13476.1 gi|345005470|ref|YP_004808323.1| - 0.022 15.0 0.1 0.036 14.3 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.1 gi|345005470|ref|YP_004808323.1| - 0.024 14.6 0.0 0.062 13.2 0.0 1.9 1 1 0 1 1 1 0 AAA ATPase domain SMC_N PF02463.14 gi|345005470|ref|YP_004808323.1| - 0.084 12.0 0.0 8.6 5.5 0.0 2.2 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain ATP_bind_1 PF03029.12 gi|345005470|ref|YP_004808323.1| - 0.13 11.8 0.0 0.25 10.8 0.0 1.5 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein UvrC_HhH_N PF08459.6 gi|345005472|ref|YP_004808325.1| - 4.4e-41 140.0 0.0 8.2e-41 139.1 0.0 1.5 1 0 0 1 1 1 1 UvrC Helix-hairpin-helix N-terminal HHH_5 PF14520.1 gi|345005472|ref|YP_004808325.1| - 5.8e-12 45.6 0.3 2.2e-11 43.7 0.2 2.0 1 0 0 1 1 1 1 Helix-hairpin-helix domain HHH_2 PF12826.2 gi|345005472|ref|YP_004808325.1| - 5e-10 39.1 0.0 1.3e-09 37.8 0.0 1.6 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH PF00633.18 gi|345005472|ref|YP_004808325.1| - 1.3e-09 37.2 0.0 8.8e-08 31.4 0.0 2.7 2 0 0 2 2 2 1 Helix-hairpin-helix motif GIY-YIG PF01541.19 gi|345005472|ref|YP_004808325.1| - 1.2e-07 31.9 0.0 2.2e-07 31.1 0.0 1.4 1 0 0 1 1 1 1 GIY-YIG catalytic domain UVR PF02151.14 gi|345005472|ref|YP_004808325.1| - 2.9e-05 23.4 4.4 2.9e-05 23.4 3.1 2.4 2 0 0 2 2 2 1 UvrB/uvrC motif 5_3_exonuc PF01367.15 gi|345005472|ref|YP_004808325.1| - 0.00024 21.2 0.0 0.19 11.9 0.0 2.6 1 1 1 2 2 2 2 5'-3' exonuclease, C-terminal SAM fold HHH_3 PF12836.2 gi|345005472|ref|YP_004808325.1| - 0.0083 16.0 0.0 0.048 13.6 0.0 2.1 2 0 0 2 2 2 1 Helix-hairpin-helix motif DUF1678 PF07913.6 gi|345005472|ref|YP_004808325.1| - 0.046 13.2 0.2 0.12 11.9 0.2 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF1678) DUF2746 PF10874.3 gi|345005472|ref|YP_004808325.1| - 0.35 11.1 4.0 0.53 10.5 0.0 3.1 3 0 0 3 3 3 0 Protein of unknown function (DUF2746) Abi PF02517.11 gi|345005473|ref|YP_004808326.1| - 6.3e-13 48.6 7.5 6.3e-13 48.6 5.2 2.5 2 2 0 2 2 2 1 CAAX protease self-immunity Ldh_1_N PF00056.18 gi|345005474|ref|YP_004808327.1| - 7.5e-39 132.7 0.2 1.1e-38 132.2 0.1 1.2 1 0 0 1 1 1 1 lactate/malate dehydrogenase, NAD binding domain Ldh_1_C PF02866.13 gi|345005474|ref|YP_004808327.1| - 1.5e-31 109.4 0.0 2.4e-31 108.7 0.0 1.4 1 0 0 1 1 1 1 lactate/malate dehydrogenase, alpha/beta C-terminal domain NCD2 PF04905.8 gi|345005475|ref|YP_004808328.1| - 0.00082 19.2 0.6 0.0009 19.0 0.4 1.1 1 0 0 1 1 1 1 NAB conserved region 2 (NCD2) DUF3110 PF11360.3 gi|345005475|ref|YP_004808328.1| - 0.1 12.3 0.4 0.33 10.8 0.0 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF3110) PemK PF02452.12 gi|345005476|ref|YP_004808329.1| - 7.9e-05 22.8 0.0 9e-05 22.6 0.0 1.1 1 0 0 1 1 1 1 PemK-like protein MarR_2 PF12802.2 gi|345005477|ref|YP_004808330.1| - 2e-05 24.1 0.0 2.8e-05 23.6 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_Crp_2 PF13545.1 gi|345005477|ref|YP_004808330.1| - 0.001 18.8 0.0 0.0018 18.0 0.0 1.5 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain Rrf2 PF02082.15 gi|345005477|ref|YP_004808330.1| - 0.0019 18.2 0.0 0.0037 17.3 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulator HTH_36 PF13730.1 gi|345005477|ref|YP_004808330.1| - 0.0042 17.1 0.0 0.0061 16.6 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.14 gi|345005477|ref|YP_004808330.1| - 0.0065 16.1 0.0 0.011 15.4 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Fe_dep_repress PF01325.14 gi|345005477|ref|YP_004808330.1| - 0.012 15.5 0.0 0.077 12.9 0.0 2.0 2 0 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain TFIIE_alpha PF02002.12 gi|345005477|ref|YP_004808330.1| - 0.012 15.0 0.2 0.015 14.7 0.2 1.3 1 0 0 1 1 1 0 TFIIE alpha subunit HTH_45 PF14947.1 gi|345005477|ref|YP_004808330.1| - 0.019 14.7 0.0 0.024 14.4 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn-helix UPF0240 PF06784.6 gi|345005477|ref|YP_004808330.1| - 0.04 13.6 0.1 0.085 12.5 0.0 1.5 1 1 1 2 2 2 0 Uncharacterised protein family (UPF0240) HTH_27 PF13463.1 gi|345005477|ref|YP_004808330.1| - 0.054 13.8 0.2 0.09 13.1 0.1 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain MarR PF01047.17 gi|345005477|ref|YP_004808330.1| - 0.066 12.9 0.0 0.12 12.1 0.0 1.4 1 0 0 1 1 1 0 MarR family Penicillinase_R PF03965.11 gi|345005477|ref|YP_004808330.1| - 0.067 13.2 0.1 0.12 12.4 0.1 1.4 1 1 0 1 1 1 0 Penicillinase repressor HTH_11 PF08279.7 gi|345005477|ref|YP_004808330.1| - 0.12 12.0 0.2 0.2 11.3 0.1 1.3 1 0 0 1 1 1 0 HTH domain HTH_29 PF13551.1 gi|345005478|ref|YP_004808331.1| - 4.7e-24 84.6 1.4 3.1e-23 82.0 0.2 2.2 2 0 0 2 2 2 1 Winged helix-turn helix DDE_3 PF13358.1 gi|345005478|ref|YP_004808331.1| - 7.6e-18 64.6 0.2 1.6e-17 63.6 0.0 1.6 2 0 0 2 2 2 1 DDE superfamily endonuclease HTH_23 PF13384.1 gi|345005478|ref|YP_004808331.1| - 2.5e-12 46.0 1.3 4e-11 42.1 0.2 2.9 3 0 0 3 3 3 1 Homeodomain-like domain HTH_32 PF13565.1 gi|345005478|ref|YP_004808331.1| - 6e-12 46.1 0.5 2.2e-11 44.3 0.3 2.0 1 0 0 1 1 1 1 Homeodomain-like domain HTH_28 PF13518.1 gi|345005478|ref|YP_004808331.1| - 4.6e-05 23.3 0.2 0.00029 20.7 0.0 2.2 2 0 0 2 2 2 1 Helix-turn-helix domain rve PF00665.21 gi|345005478|ref|YP_004808331.1| - 0.014 15.4 0.0 0.026 14.6 0.0 1.5 1 0 0 1 1 1 0 Integrase core domain HTH_Tnp_Tc3_2 PF01498.13 gi|345005478|ref|YP_004808331.1| - 0.083 12.9 0.3 0.21 11.6 0.0 1.8 2 0 0 2 2 2 0 Transposase Helicase_C_2 PF13307.1 gi|345005479|ref|YP_004808332.1| - 2.4e-28 99.1 0.0 4.3e-28 98.3 0.0 1.3 1 0 0 1 1 1 1 Helicase C-terminal domain DEAD_2 PF06733.10 gi|345005479|ref|YP_004808332.1| - 1.7e-11 43.8 0.0 1.6e-10 40.6 0.0 2.4 2 1 0 2 2 2 1 DEAD_2 ResIII PF04851.10 gi|345005479|ref|YP_004808332.1| - 0.00012 21.9 0.0 0.0027 17.5 0.0 2.2 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit AAA_19 PF13245.1 gi|345005479|ref|YP_004808332.1| - 0.00017 21.2 0.5 0.0018 18.0 0.0 2.7 3 0 0 3 3 3 1 Part of AAA domain PhoH PF02562.11 gi|345005479|ref|YP_004808332.1| - 0.00042 19.5 0.0 0.0042 16.3 0.0 2.0 2 0 0 2 2 2 1 PhoH-like protein DEAD PF00270.24 gi|345005479|ref|YP_004808332.1| - 0.047 13.1 0.0 6 6.3 0.0 2.5 2 0 0 2 2 2 0 DEAD/DEAH box helicase AAA_22 PF13401.1 gi|345005479|ref|YP_004808332.1| - 0.053 13.6 0.0 4.3 7.4 0.0 2.9 3 0 0 3 3 3 0 AAA domain AAA_30 PF13604.1 gi|345005479|ref|YP_004808332.1| - 0.055 13.0 0.0 1.9 8.0 0.0 2.4 2 0 0 2 2 2 0 AAA domain Peptidase_S9 PF00326.16 gi|345005480|ref|YP_004808333.1| - 8.8e-46 155.8 0.1 1.3e-45 155.3 0.1 1.2 1 0 0 1 1 1 1 Prolyl oligopeptidase family Abhydrolase_5 PF12695.2 gi|345005480|ref|YP_004808333.1| - 8.8e-15 54.7 0.0 1.6e-14 53.8 0.0 1.4 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_6 PF12697.2 gi|345005480|ref|YP_004808333.1| - 2.6e-10 40.5 0.5 2.2e-09 37.5 0.3 2.2 1 1 0 1 1 1 1 Alpha/beta hydrolase family Peptidase_S15 PF02129.13 gi|345005480|ref|YP_004808333.1| - 1.2e-07 31.4 0.2 0.0023 17.3 0.8 2.2 1 1 1 2 2 2 2 X-Pro dipeptidyl-peptidase (S15 family) DPPIV_N PF00930.16 gi|345005480|ref|YP_004808333.1| - 1.1e-05 24.1 0.0 0.024 13.2 0.0 2.2 1 1 1 2 2 2 2 Dipeptidyl peptidase IV (DPP IV) N-terminal region Peptidase_S28 PF05577.7 gi|345005480|ref|YP_004808333.1| - 2.9e-05 22.8 0.4 7.7e-05 21.4 0.1 1.7 2 0 0 2 2 2 1 Serine carboxypeptidase S28 Peptidase_S9_N PF02897.10 gi|345005480|ref|YP_004808333.1| - 0.00025 19.7 0.0 0.00037 19.1 0.0 1.2 1 0 0 1 1 1 1 Prolyl oligopeptidase, N-terminal beta-propeller domain Pectate_lyase22 PF14583.1 gi|345005480|ref|YP_004808333.1| - 0.0004 18.9 0.3 0.0038 15.7 0.2 2.3 1 1 1 2 2 2 2 Oligogalacturonate lyase Esterase_phd PF10503.4 gi|345005480|ref|YP_004808333.1| - 0.0015 17.7 0.0 0.0027 16.9 0.0 1.4 1 0 0 1 1 1 1 Esterase PHB depolymerase AXE1 PF05448.7 gi|345005480|ref|YP_004808333.1| - 0.0022 16.5 0.1 0.026 13.0 0.0 2.1 2 0 0 2 2 2 1 Acetyl xylan esterase (AXE1) Abhydrolase_2 PF02230.11 gi|345005480|ref|YP_004808333.1| - 0.028 13.8 0.0 3 7.2 0.0 2.3 2 0 0 2 2 2 0 Phospholipase/Carboxylesterase DLH PF01738.13 gi|345005480|ref|YP_004808333.1| - 0.048 12.9 0.0 0.46 9.7 0.0 2.2 1 1 0 1 1 1 0 Dienelactone hydrolase family PD40 PF07676.7 gi|345005480|ref|YP_004808333.1| - 0.055 13.1 0.5 4 7.1 0.0 3.3 3 0 0 3 3 3 0 WD40-like Beta Propeller Repeat Abhydrolase_1 PF00561.15 gi|345005480|ref|YP_004808333.1| - 0.078 12.5 0.0 2.7 7.4 0.1 2.5 1 1 0 2 2 2 0 alpha/beta hydrolase fold Kelch_3 PF13415.1 gi|345005480|ref|YP_004808333.1| - 1.6 9.0 6.5 13 6.0 0.0 4.6 5 1 1 6 6 5 0 Galactose oxidase, central domain DUF159 PF02586.9 gi|345005481|ref|YP_004808334.1| - 2.6e-54 183.9 0.0 2.9e-54 183.7 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised ACR, COG2135 DUF4185 PF13810.1 gi|345005481|ref|YP_004808334.1| - 0.097 11.5 0.0 0.12 11.2 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4185) peroxidase PF00141.18 gi|345005482|ref|YP_004808335.1| - 3.6e-87 291.6 0.0 7.5e-49 166.2 0.0 2.1 2 0 0 2 2 2 2 Peroxidase Thioredoxin PF00085.15 gi|345005484|ref|YP_004808337.1| - 1.3e-13 50.5 0.0 1.4e-13 50.4 0.0 1.0 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.1 gi|345005484|ref|YP_004808337.1| - 3.3e-06 27.2 0.0 0.00023 21.3 0.0 2.1 1 1 0 1 1 1 1 Thioredoxin-like domain TraF PF13728.1 gi|345005484|ref|YP_004808337.1| - 0.00024 20.6 0.0 0.0015 18.1 0.0 1.8 1 1 0 1 1 1 1 F plasmid transfer operon protein Thioredoxin_3 PF13192.1 gi|345005484|ref|YP_004808337.1| - 0.005 16.6 0.0 0.007 16.1 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin domain Thioredoxin_7 PF13899.1 gi|345005484|ref|YP_004808337.1| - 0.013 15.5 0.0 0.044 13.8 0.0 1.9 1 1 0 1 1 1 0 Thioredoxin-like HyaE PF07449.6 gi|345005484|ref|YP_004808337.1| - 0.046 13.6 0.0 0.084 12.7 0.0 1.4 2 0 0 2 2 2 0 Hydrogenase-1 expression protein HyaE DUF836 PF05768.9 gi|345005484|ref|YP_004808337.1| - 0.062 13.5 0.0 0.069 13.4 0.0 1.4 1 1 0 1 1 1 0 Glutaredoxin-like domain (DUF836) TrbC_Ftype PF09673.5 gi|345005484|ref|YP_004808337.1| - 0.095 12.3 0.0 0.12 11.9 0.0 1.3 1 1 0 1 1 1 0 Type-F conjugative transfer system pilin assembly protein HATPase_c PF02518.21 gi|345005485|ref|YP_004808338.1| - 3.6e-16 58.8 0.4 1.2e-15 57.1 0.3 1.9 1 1 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.20 gi|345005485|ref|YP_004808338.1| - 6.3e-14 51.7 0.6 1.3e-13 50.7 0.3 1.7 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain GAF_2 PF13185.1 gi|345005485|ref|YP_004808338.1| - 2e-05 25.1 0.2 0.00032 21.2 0.0 2.5 2 1 1 3 3 3 1 GAF domain GAF_3 PF13492.1 gi|345005485|ref|YP_004808338.1| - 0.00041 20.4 0.0 0.0026 17.8 0.0 2.1 2 0 0 2 2 2 1 GAF domain DUF2930 PF11152.3 gi|345005485|ref|YP_004808338.1| - 0.013 14.6 0.0 0.022 13.8 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2930) Hemerythrin PF01814.18 gi|345005485|ref|YP_004808338.1| - 0.18 11.9 3.8 1.2 9.3 2.6 2.3 1 1 0 1 1 1 0 Hemerythrin HHE cation binding domain DUF457 PF04307.9 gi|345005486|ref|YP_004808339.1| - 1.7e-06 27.4 10.8 3.9e-06 26.2 7.5 1.6 1 1 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) MOSC PF03473.12 gi|345005487|ref|YP_004808340.1| - 1e-18 67.0 0.0 1.4e-18 66.6 0.0 1.2 1 0 0 1 1 1 1 MOSC domain MOSC_N PF03476.11 gi|345005487|ref|YP_004808340.1| - 7.1e-15 54.7 0.0 1.4e-14 53.7 0.0 1.7 1 1 0 1 1 1 1 MOSC N-terminal beta barrel domain SNase PF00565.12 gi|345005488|ref|YP_004808341.1| - 1.4e-22 80.0 0.0 1.7e-22 79.6 0.0 1.1 1 0 0 1 1 1 1 Staphylococcal nuclease homologue Excalibur PF05901.6 gi|345005488|ref|YP_004808341.1| - 3.3e-08 33.7 1.0 7.1e-08 32.6 0.7 1.6 1 0 0 1 1 1 1 Excalibur calcium-binding domain DUF1127 PF06568.6 gi|345005489|ref|YP_004808342.1| - 0.068 12.5 1.0 0.068 12.6 0.7 1.2 1 1 0 1 1 1 0 Domain of unknown function (DUF1127) ABC_tran PF00005.22 gi|345005491|ref|YP_004808344.1| - 1.8e-60 203.2 0.0 2.4e-32 112.1 0.0 2.2 2 0 0 2 2 2 2 ABC transporter oligo_HPY PF08352.7 gi|345005491|ref|YP_004808344.1| - 1.1e-31 109.0 0.5 5.2e-15 55.5 0.1 2.7 2 0 0 2 2 2 2 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|345005491|ref|YP_004808344.1| - 1.5e-17 64.5 0.3 1.7e-06 28.1 0.0 4.1 3 1 1 4 4 4 2 AAA domain AAA_22 PF13401.1 gi|345005491|ref|YP_004808344.1| - 8.9e-10 38.8 3.8 5.6e-05 23.2 0.2 3.8 2 2 0 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|345005491|ref|YP_004808344.1| - 2.3e-09 37.4 1.5 6.1e-05 23.0 0.3 2.5 2 0 0 2 2 2 2 AAA ATPase domain SMC_N PF02463.14 gi|345005491|ref|YP_004808344.1| - 6e-09 35.4 0.0 0.00066 18.9 0.0 2.4 2 1 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|345005491|ref|YP_004808344.1| - 1.3e-07 31.0 0.3 0.0036 16.7 0.0 2.5 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_5 PF07728.9 gi|345005491|ref|YP_004808344.1| - 2.5e-07 30.5 1.0 0.031 13.9 0.0 3.5 4 0 0 4 4 4 2 AAA domain (dynein-related subfamily) SbcCD_C PF13558.1 gi|345005491|ref|YP_004808344.1| - 5.1e-06 26.3 0.6 0.01 15.7 0.0 3.8 2 2 0 2 2 2 1 Putative exonuclease SbcCD, C subunit AAA PF00004.24 gi|345005491|ref|YP_004808344.1| - 0.00026 21.1 0.1 0.12 12.5 0.0 2.8 3 0 0 3 3 2 1 ATPase family associated with various cellular activities (AAA) DUF258 PF03193.11 gi|345005491|ref|YP_004808344.1| - 0.00027 20.1 0.6 0.76 8.9 0.0 2.7 3 0 0 3 3 3 2 Protein of unknown function, DUF258 AAA_15 PF13175.1 gi|345005491|ref|YP_004808344.1| - 0.00035 19.7 0.2 0.11 11.5 0.0 3.3 4 0 0 4 4 4 1 AAA ATPase domain AAA_10 PF12846.2 gi|345005491|ref|YP_004808344.1| - 0.00036 20.0 0.1 0.79 9.0 0.0 3.0 3 0 0 3 3 3 1 AAA-like domain AIG1 PF04548.11 gi|345005491|ref|YP_004808344.1| - 0.00039 19.5 0.3 0.042 12.9 0.0 2.3 2 0 0 2 2 2 1 AIG1 family PRK PF00485.13 gi|345005491|ref|YP_004808344.1| - 0.00068 19.2 0.1 0.92 9.0 0.0 2.8 3 0 0 3 3 3 2 Phosphoribulokinase / Uridine kinase family Zeta_toxin PF06414.7 gi|345005491|ref|YP_004808344.1| - 0.00084 18.4 0.2 0.41 9.6 0.0 2.3 2 0 0 2 2 2 2 Zeta toxin AAA_25 PF13481.1 gi|345005491|ref|YP_004808344.1| - 0.0012 18.2 1.3 2.2 7.6 0.0 3.2 3 1 0 3 3 3 2 AAA domain NB-ARC PF00931.17 gi|345005491|ref|YP_004808344.1| - 0.0013 17.6 0.2 0.89 8.3 0.0 2.3 2 0 0 2 2 2 2 NB-ARC domain DBI_PRT PF02277.12 gi|345005491|ref|YP_004808344.1| - 0.0014 17.8 0.9 0.0068 15.5 0.1 2.1 2 0 0 2 2 2 1 Phosphoribosyltransferase MobB PF03205.9 gi|345005491|ref|YP_004808344.1| - 0.0015 18.2 0.1 1 9.0 0.0 2.5 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B RNA_helicase PF00910.17 gi|345005491|ref|YP_004808344.1| - 0.0021 18.2 0.1 0.87 9.7 0.0 2.3 2 0 0 2 2 2 1 RNA helicase AAA_33 PF13671.1 gi|345005491|ref|YP_004808344.1| - 0.0021 17.9 0.0 0.24 11.2 0.0 2.4 2 0 0 2 2 2 1 AAA domain AAA_18 PF13238.1 gi|345005491|ref|YP_004808344.1| - 0.0036 17.5 0.4 0.58 10.4 0.0 2.6 2 0 0 2 2 2 1 AAA domain AAA_30 PF13604.1 gi|345005491|ref|YP_004808344.1| - 0.0045 16.5 0.2 2.9 7.4 0.1 2.5 2 0 0 2 2 2 1 AAA domain Mg_chelatase PF01078.16 gi|345005491|ref|YP_004808344.1| - 0.0046 16.1 0.0 0.11 11.6 0.0 2.5 3 0 0 3 3 2 1 Magnesium chelatase, subunit ChlI AAA_17 PF13207.1 gi|345005491|ref|YP_004808344.1| - 0.0052 17.6 0.1 0.96 10.2 0.0 2.8 2 0 0 2 2 2 1 AAA domain MMR_HSR1 PF01926.18 gi|345005491|ref|YP_004808344.1| - 0.012 15.5 0.1 5.5 6.9 0.0 2.6 2 0 0 2 2 2 0 50S ribosome-binding GTPase DUF87 PF01935.12 gi|345005491|ref|YP_004808344.1| - 0.012 15.4 1.2 1.2 8.9 0.1 2.5 2 0 0 2 2 2 0 Domain of unknown function DUF87 ATP-synt_ab PF00006.20 gi|345005491|ref|YP_004808344.1| - 0.02 14.4 0.0 0.66 9.4 0.0 2.1 2 0 0 2 2 2 0 ATP synthase alpha/beta family, nucleotide-binding domain NACHT PF05729.7 gi|345005491|ref|YP_004808344.1| - 0.021 14.4 1.0 3.2 7.3 0.1 2.4 2 0 0 2 2 2 0 NACHT domain Sigma54_activat PF00158.21 gi|345005491|ref|YP_004808344.1| - 0.024 14.1 4.0 3.7 6.9 0.0 3.3 4 0 0 4 4 3 0 Sigma-54 interaction domain AAA_23 PF13476.1 gi|345005491|ref|YP_004808344.1| - 0.029 14.7 0.0 3.9 7.7 0.0 2.2 2 0 0 2 2 2 0 AAA domain UPF0079 PF02367.12 gi|345005491|ref|YP_004808344.1| - 0.056 13.0 0.8 1.8 8.2 0.0 2.3 2 0 0 2 2 2 0 Uncharacterised P-loop hydrolase UPF0079 DUF815 PF05673.8 gi|345005491|ref|YP_004808344.1| - 0.14 11.0 0.2 4.2 6.2 0.0 2.5 3 0 0 3 3 3 0 Protein of unknown function (DUF815) Miro PF08477.8 gi|345005491|ref|YP_004808344.1| - 0.2 12.1 0.0 33 4.9 0.0 2.4 2 0 0 2 2 2 0 Miro-like protein BPD_transp_1 PF00528.17 gi|345005492|ref|YP_004808345.1| - 6.2e-33 113.8 9.5 8.2e-33 113.4 5.5 1.8 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.2 gi|345005492|ref|YP_004808345.1| - 1.8e-07 30.3 3.0 1.3e-06 27.6 0.0 2.6 2 0 0 2 2 2 1 N-terminal TM domain of oligopeptide transport permease C PKD_channel PF08016.7 gi|345005492|ref|YP_004808345.1| - 0.18 10.1 0.0 0.27 9.6 0.0 1.2 1 0 0 1 1 1 0 Polycystin cation channel BPD_transp_1 PF00528.17 gi|345005493|ref|YP_004808346.1| - 1.9e-38 131.8 14.0 1.9e-38 131.8 9.7 1.9 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component Ndc1_Nup PF09531.5 gi|345005493|ref|YP_004808346.1| - 0.05 12.0 0.9 0.08 11.3 0.6 1.3 1 0 0 1 1 1 0 Nucleoporin protein Ndc1-Nup DUF1700 PF08006.6 gi|345005493|ref|YP_004808346.1| - 1.9 7.7 6.9 0.76 9.0 0.1 3.0 3 0 0 3 3 3 0 Protein of unknown function (DUF1700) DUF3593 PF12159.3 gi|345005493|ref|YP_004808346.1| - 1.9 8.3 5.5 20 5.0 0.3 2.9 2 2 0 2 2 2 0 Protein of unknown function (DUF3593) SKG6 PF08693.5 gi|345005493|ref|YP_004808346.1| - 6 6.2 10.8 20 4.6 7.5 1.9 1 0 0 1 1 1 0 Transmembrane alpha-helix domain SBP_bac_5 PF00496.17 gi|345005494|ref|YP_004808347.1| - 1.1e-79 268.0 6.2 1.5e-79 267.5 4.3 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle TAT_signal PF10518.4 gi|345005494|ref|YP_004808347.1| - 0.0096 15.8 1.1 0.025 14.5 0.8 1.8 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence TPR_7 PF13176.1 gi|345005494|ref|YP_004808347.1| - 0.018 14.7 0.2 2.5 8.1 0.0 2.9 2 0 0 2 2 2 0 Tetratricopeptide repeat TPR_12 PF13424.1 gi|345005494|ref|YP_004808347.1| - 0.15 11.9 0.1 10 6.1 0.0 2.3 2 0 0 2 2 2 0 Tetratricopeptide repeat DUF1028 PF06267.7 gi|345005495|ref|YP_004808348.1| - 3e-57 193.1 0.1 3.5e-57 192.8 0.1 1.0 1 0 0 1 1 1 1 Family of unknown function (DUF1028) KaiC PF06745.8 gi|345005496|ref|YP_004808349.1| - 2.3e-05 23.6 0.0 4.8e-05 22.5 0.0 1.4 1 1 0 1 1 1 1 KaiC DUF835 PF05763.7 gi|345005496|ref|YP_004808349.1| - 0.053 13.0 0.0 0.079 12.5 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF835) CoA_binding_2 PF13380.1 gi|345005497|ref|YP_004808350.1| - 2.2e-37 127.7 0.1 2.6e-37 127.5 0.0 1.0 1 0 0 1 1 1 1 CoA binding domain CoA_binding PF02629.14 gi|345005497|ref|YP_004808350.1| - 0.0012 19.2 0.0 0.0018 18.7 0.0 1.2 1 0 0 1 1 1 1 CoA binding domain TusA PF01206.12 gi|345005497|ref|YP_004808350.1| - 0.029 13.9 0.0 0.049 13.2 0.0 1.3 1 0 0 1 1 1 0 Sulfurtransferase TusA PALP PF00291.20 gi|345005498|ref|YP_004808351.1| - 2.3e-53 181.4 1.1 2.6e-53 181.2 0.8 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme RmuC PF02646.11 gi|345005499|ref|YP_004808352.1| - 0.00019 20.4 2.8 0.00023 20.1 1.9 1.1 1 0 0 1 1 1 1 RmuC family DUF2802 PF10975.3 gi|345005499|ref|YP_004808352.1| - 0.0029 17.3 6.4 0.0083 15.8 4.5 1.9 1 1 0 1 1 1 1 Protein of unknown function (DUF2802) HOOK PF05622.7 gi|345005499|ref|YP_004808352.1| - 0.003 15.4 3.4 0.0033 15.3 2.3 1.1 1 0 0 1 1 1 1 HOOK protein Striatin PF08232.7 gi|345005499|ref|YP_004808352.1| - 0.0035 17.6 8.5 0.0043 17.3 5.9 1.0 1 0 0 1 1 1 1 Striatin family Med9 PF07544.8 gi|345005499|ref|YP_004808352.1| - 0.0036 17.0 4.7 0.0036 17.0 3.3 1.6 1 1 1 2 2 2 1 RNA polymerase II transcription mediator complex subunit 9 Atg14 PF10186.4 gi|345005499|ref|YP_004808352.1| - 0.0072 15.3 3.4 0.0076 15.2 2.4 1.1 1 0 0 1 1 1 1 UV radiation resistance protein and autophagy-related subunit 14 DUF4618 PF15397.1 gi|345005499|ref|YP_004808352.1| - 0.011 15.0 1.2 0.015 14.6 0.8 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4618) DegS PF05384.6 gi|345005499|ref|YP_004808352.1| - 0.012 14.8 5.8 0.014 14.5 3.9 1.3 1 1 0 1 1 1 0 Sensor protein DegS Spc7 PF08317.6 gi|345005499|ref|YP_004808352.1| - 0.012 14.2 3.0 0.013 14.2 2.1 1.1 1 0 0 1 1 1 0 Spc7 kinetochore protein DUF948 PF06103.6 gi|345005499|ref|YP_004808352.1| - 0.018 14.9 1.1 0.028 14.2 0.7 1.2 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF948) FbpA PF05833.6 gi|345005499|ref|YP_004808352.1| - 0.018 13.6 9.8 0.023 13.2 6.8 1.3 1 1 0 1 1 1 0 Fibronectin-binding protein A N-terminus (FbpA) Dynamitin PF04912.9 gi|345005499|ref|YP_004808352.1| - 0.019 13.8 2.9 0.02 13.6 2.0 1.0 1 0 0 1 1 1 0 Dynamitin Reo_sigmaC PF04582.7 gi|345005499|ref|YP_004808352.1| - 0.023 13.8 0.6 0.027 13.6 0.4 1.1 1 0 0 1 1 1 0 Reovirus sigma C capsid protein TelA PF05816.6 gi|345005499|ref|YP_004808352.1| - 0.025 13.2 5.2 0.029 13.0 3.6 1.0 1 0 0 1 1 1 0 Toxic anion resistance protein (TelA) Prominin PF05478.6 gi|345005499|ref|YP_004808352.1| - 0.028 11.9 0.8 0.029 11.9 0.6 1.0 1 0 0 1 1 1 0 Prominin COG2 PF06148.6 gi|345005499|ref|YP_004808352.1| - 0.03 14.2 3.1 0.033 14.0 2.0 1.3 1 1 0 1 1 1 0 COG (conserved oligomeric Golgi) complex component, COG2 Fib_alpha PF08702.5 gi|345005499|ref|YP_004808352.1| - 0.03 14.4 2.5 0.034 14.2 1.5 1.3 1 1 0 1 1 1 0 Fibrinogen alpha/beta chain family Bacillus_HBL PF05791.6 gi|345005499|ref|YP_004808352.1| - 0.035 13.4 0.2 0.037 13.3 0.2 1.2 1 0 0 1 1 1 0 Bacillus haemolytic enterotoxin (HBL) DUF1664 PF07889.7 gi|345005499|ref|YP_004808352.1| - 0.036 13.8 0.6 0.043 13.6 0.4 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1664) TMPIT PF07851.8 gi|345005499|ref|YP_004808352.1| - 0.042 12.9 1.0 0.054 12.5 0.7 1.1 1 0 0 1 1 1 0 TMPIT-like protein Gp-FAR-1 PF05823.7 gi|345005499|ref|YP_004808352.1| - 0.043 13.7 1.4 0.053 13.4 1.0 1.2 1 0 0 1 1 1 0 Nematode fatty acid retinoid binding protein (Gp-FAR-1) Cast PF10174.4 gi|345005499|ref|YP_004808352.1| - 0.049 11.7 9.5 0.059 11.4 6.6 1.1 1 0 0 1 1 1 0 RIM-binding protein of the cytomatrix active zone OmpH PF03938.9 gi|345005499|ref|YP_004808352.1| - 0.056 13.3 11.9 0.077 12.9 8.2 1.2 1 0 0 1 1 1 0 Outer membrane protein (OmpH-like) YkuI_C PF10388.4 gi|345005499|ref|YP_004808352.1| - 0.059 13.0 0.4 0.067 12.8 0.3 1.2 1 0 0 1 1 1 0 EAL-domain associated signalling protein domain THOC7 PF05615.8 gi|345005499|ref|YP_004808352.1| - 0.075 13.2 8.4 0.098 12.9 5.8 1.3 1 1 0 1 1 1 0 Tho complex subunit 7 DUF148 PF02520.12 gi|345005499|ref|YP_004808352.1| - 0.086 12.6 2.8 0.16 11.7 1.5 1.8 1 1 0 1 1 1 0 Domain of unknown function DUF148 DUF1395 PF07160.7 gi|345005499|ref|YP_004808352.1| - 0.088 12.2 1.6 0.092 12.2 1.1 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1395) Mnd1 PF03962.10 gi|345005499|ref|YP_004808352.1| - 0.1 12.2 6.0 0.14 11.8 4.2 1.2 1 0 0 1 1 1 0 Mnd1 family DUF4404 PF14357.1 gi|345005499|ref|YP_004808352.1| - 0.12 12.8 7.4 0.04 14.3 2.8 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4404) TMF_DNA_bd PF12329.3 gi|345005499|ref|YP_004808352.1| - 0.14 11.9 13.6 0.095 12.5 4.5 2.4 1 1 1 2 2 2 0 TATA element modulatory factor 1 DNA binding Syntaxin-6_N PF09177.6 gi|345005499|ref|YP_004808352.1| - 0.15 12.4 4.6 0.15 12.5 2.4 1.6 1 1 0 1 1 1 0 Syntaxin 6, N-terminal AHH PF14412.1 gi|345005499|ref|YP_004808352.1| - 0.16 11.9 2.0 0.31 11.0 1.4 1.5 1 0 0 1 1 1 0 A nuclease family of the HNH/ENDO VII superfamily with conserved AHH AAA_13 PF13166.1 gi|345005499|ref|YP_004808352.1| - 0.18 10.2 5.4 0.23 9.9 3.7 1.1 1 0 0 1 1 1 0 AAA domain DivIVA PF05103.8 gi|345005499|ref|YP_004808352.1| - 0.22 11.5 14.7 0.42 10.6 10.2 1.4 1 1 0 1 1 1 0 DivIVA protein Rop-like PF05082.8 gi|345005499|ref|YP_004808352.1| - 0.25 10.8 0.3 0.25 10.8 0.2 2.2 2 1 0 2 2 2 0 Rop-like DUF2570 PF10828.3 gi|345005499|ref|YP_004808352.1| - 0.25 10.9 4.6 0.32 10.6 2.9 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF2570) DUF3391 PF11871.3 gi|345005499|ref|YP_004808352.1| - 0.28 11.3 8.6 0.036 14.2 2.3 1.8 1 1 1 2 2 2 0 Domain of unknown function (DUF3391) SpoIID PF08486.5 gi|345005499|ref|YP_004808352.1| - 0.29 11.4 6.5 1.5 9.1 0.4 2.2 2 0 0 2 2 2 0 Stage II sporulation protein IncA PF04156.9 gi|345005499|ref|YP_004808352.1| - 0.35 10.4 8.6 0.13 11.8 4.0 1.6 1 1 1 2 2 2 0 IncA protein TMCO5 PF14992.1 gi|345005499|ref|YP_004808352.1| - 0.4 9.7 4.3 0.4 9.7 2.7 1.2 1 1 0 1 1 1 0 TMCO5 family FliD_N PF02465.13 gi|345005499|ref|YP_004808352.1| - 0.4 11.0 4.9 0.53 10.6 3.4 1.3 1 1 0 1 1 1 0 Flagellar hook-associated protein 2 N-terminus DUF1465 PF07323.7 gi|345005499|ref|YP_004808352.1| - 0.42 10.1 7.5 0.076 12.5 0.9 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF1465) DUF2019 PF09450.5 gi|345005499|ref|YP_004808352.1| - 0.46 10.3 2.6 2.6 7.9 1.8 1.9 1 1 0 1 1 1 0 Domain of unknown function (DUF2019) CASP_C PF08172.7 gi|345005499|ref|YP_004808352.1| - 0.46 9.4 4.8 0.64 8.9 3.3 1.3 1 0 0 1 1 1 0 CASP C terminal DivIC PF04977.10 gi|345005499|ref|YP_004808352.1| - 0.47 9.9 8.5 0.1 12.1 2.2 2.1 1 1 1 2 2 2 0 Septum formation initiator Flagellin_N PF00669.15 gi|345005499|ref|YP_004808352.1| - 0.48 10.2 4.7 0.59 9.9 3.3 1.2 1 0 0 1 1 1 0 Bacterial flagellin N-terminal helical region BAR_2 PF10455.4 gi|345005499|ref|YP_004808352.1| - 0.52 9.1 5.1 0.38 9.6 2.9 1.3 1 1 0 1 1 1 0 Bin/amphiphysin/Rvs domain for vesicular trafficking V_ATPase_I PF01496.14 gi|345005499|ref|YP_004808352.1| - 0.63 7.8 4.1 0.69 7.6 2.8 1.0 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family TPR_MLP1_2 PF07926.7 gi|345005499|ref|YP_004808352.1| - 0.68 9.6 18.4 0.037 13.7 5.2 2.0 1 1 1 2 2 2 0 TPR/MLP1/MLP2-like protein DUF972 PF06156.8 gi|345005499|ref|YP_004808352.1| - 0.73 10.2 7.3 1.3 9.4 5.1 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF972) AATF-Che1 PF13339.1 gi|345005499|ref|YP_004808352.1| - 0.76 9.9 5.6 1.3 9.2 3.9 1.4 1 1 0 1 1 1 0 Apoptosis antagonizing transcription factor Fmp27_WPPW PF10359.4 gi|345005499|ref|YP_004808352.1| - 0.99 7.7 5.9 1.2 7.4 4.1 1.1 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain Sec2p PF06428.6 gi|345005499|ref|YP_004808352.1| - 1 9.2 9.2 4.3 7.2 6.4 2.0 1 1 0 1 1 1 0 GDP/GTP exchange factor Sec2p LCD1 PF09798.4 gi|345005499|ref|YP_004808352.1| - 1.1 7.2 4.8 1.2 7.0 3.3 1.0 1 0 0 1 1 1 0 DNA damage checkpoint protein Seryl_tRNA_N PF02403.17 gi|345005499|ref|YP_004808352.1| - 1.1 9.3 9.5 0.74 9.8 3.2 2.1 1 1 1 2 2 2 0 Seryl-tRNA synthetase N-terminal domain DASH_Spc34 PF08657.5 gi|345005499|ref|YP_004808352.1| - 1.3 8.6 6.7 1.9 8.1 4.6 1.4 1 1 0 1 1 1 0 DASH complex subunit Spc34 FUSC PF04632.7 gi|345005499|ref|YP_004808352.1| - 1.5 7.1 5.0 1.9 6.8 3.4 1.0 1 0 0 1 1 1 0 Fusaric acid resistance protein family Spc24 PF08286.6 gi|345005499|ref|YP_004808352.1| - 1.7 8.3 8.1 4.2 7.0 5.6 1.7 1 1 0 1 1 1 0 Spc24 subunit of Ndc80 Prefoldin_2 PF01920.15 gi|345005499|ref|YP_004808352.1| - 1.9 8.3 9.3 2.4 7.9 4.6 2.3 1 1 0 1 1 1 0 Prefoldin subunit TATR PF03430.8 gi|345005499|ref|YP_004808352.1| - 2.1 6.9 7.8 2.4 6.7 5.4 1.0 1 0 0 1 1 1 0 Trans-activating transcriptional regulator Cep57_CLD_2 PF14197.1 gi|345005499|ref|YP_004808352.1| - 2.2 8.2 10.8 0.17 11.8 3.8 1.8 2 0 0 2 2 1 0 Centrosome localisation domain of PPC89 Borrelia_P83 PF05262.6 gi|345005499|ref|YP_004808352.1| - 3.5 5.8 11.4 4.3 5.4 7.9 1.1 1 0 0 1 1 1 0 Borrelia P83/100 protein DUF2203 PF09969.4 gi|345005499|ref|YP_004808352.1| - 7.8 6.7 7.3 24 5.1 5.1 1.8 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2203) ATG16 PF08614.6 gi|345005499|ref|YP_004808352.1| - 7.9 6.2 12.2 0.38 10.5 3.2 1.9 1 1 0 2 2 2 0 Autophagy protein 16 (ATG16) Transposase_24 PF03004.9 gi|345005499|ref|YP_004808352.1| - 9.2 6.1 9.1 0.6 9.9 1.6 2.0 1 1 1 2 2 2 0 Plant transposase (Ptta/En/Spm family) Peptidase_M20 PF01546.23 gi|345005500|ref|YP_004808353.1| - 9.8e-28 96.9 0.9 1.4e-27 96.4 0.6 1.2 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.9 gi|345005500|ref|YP_004808353.1| - 6.8e-23 80.5 0.0 1.6e-22 79.3 0.0 1.7 1 0 0 1 1 1 1 Peptidase dimerisation domain SSF PF00474.12 gi|345005501|ref|YP_004808354.1| - 7.2e-37 126.9 35.0 8.8e-37 126.6 24.2 1.1 1 0 0 1 1 1 1 Sodium:solute symporter family DUF3154 PF11351.3 gi|345005501|ref|YP_004808354.1| - 0.86 9.3 4.3 0.68 9.6 1.3 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF3154) DUF378 PF04070.7 gi|345005502|ref|YP_004808355.1| - 0.077 12.6 0.6 0.085 12.5 0.4 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF378) Dabb PF07876.7 gi|345005503|ref|YP_004808356.1| - 0.022 15.1 0.1 0.033 14.6 0.1 1.4 1 0 0 1 1 1 0 Stress responsive A/B Barrel Domain ABM PF03992.11 gi|345005503|ref|YP_004808356.1| - 0.11 12.5 4.7 0.41 10.7 0.3 2.8 1 1 1 2 2 2 0 Antibiotic biosynthesis monooxygenase FAA_hydrolase PF01557.13 gi|345005504|ref|YP_004808357.1| - 8e-60 201.9 0.6 9.7e-60 201.7 0.4 1.0 1 0 0 1 1 1 1 Fumarylacetoacetate (FAA) hydrolase family DUF2437 PF10370.4 gi|345005504|ref|YP_004808357.1| - 0.0012 19.1 0.1 0.39 11.1 0.0 2.8 1 1 1 2 2 2 2 Domain of unknown function (DUF2437) Peptidase_M24 PF00557.19 gi|345005505|ref|YP_004808358.1| - 2.3e-52 177.6 1.9 3.1e-52 177.1 1.3 1.2 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.13 gi|345005505|ref|YP_004808358.1| - 2.5e-09 37.7 0.1 5.5e-09 36.6 0.0 1.6 1 0 0 1 1 1 1 Creatinase/Prolidase N-terminal domain Amidohydro_1 PF01979.15 gi|345005506|ref|YP_004808359.1| - 5.9e-30 105.0 1.5 6.8e-30 104.8 1.0 1.0 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_4 PF13147.1 gi|345005506|ref|YP_004808359.1| - 1.9e-16 60.9 17.4 2.1e-15 57.4 12.1 2.0 1 1 0 1 1 1 1 Amidohydrolase Amidohydro_3 PF07969.6 gi|345005506|ref|YP_004808359.1| - 2.7e-13 49.9 11.8 1.9e-10 40.5 5.1 2.5 1 1 0 2 2 2 2 Amidohydrolase family Amidohydro_5 PF13594.1 gi|345005506|ref|YP_004808359.1| - 5.2e-10 38.9 0.4 1.4e-09 37.6 0.2 1.8 1 0 0 1 1 1 1 Amidohydrolase DUF561 PF04481.7 gi|345005506|ref|YP_004808359.1| - 0.16 10.9 0.0 0.38 9.6 0.0 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF561) Peptidase_M24 PF00557.19 gi|345005507|ref|YP_004808360.1| - 2.5e-32 112.1 0.4 3.3e-32 111.7 0.3 1.1 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.13 gi|345005507|ref|YP_004808360.1| - 4.3e-17 62.8 0.0 8e-17 61.9 0.0 1.5 1 0 0 1 1 1 1 Creatinase/Prolidase N-terminal domain SBP_bac_8 PF13416.1 gi|345005508|ref|YP_004808361.1| - 1.3e-21 77.6 2.2 1.7e-21 77.2 1.5 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.1 gi|345005508|ref|YP_004808361.1| - 9.8e-21 74.1 1.0 1.3e-20 73.7 0.7 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein ABC_tran PF00005.22 gi|345005509|ref|YP_004808362.1| - 4.3e-34 117.7 0.0 7.6e-34 116.9 0.0 1.4 1 0 0 1 1 1 1 ABC transporter TOBE_2 PF08402.5 gi|345005509|ref|YP_004808362.1| - 1.6e-15 56.8 5.7 4.6e-14 52.1 0.1 3.5 2 1 2 4 4 4 2 TOBE domain AAA_21 PF13304.1 gi|345005509|ref|YP_004808362.1| - 9.3e-10 38.9 0.0 2.2e-06 27.8 0.0 2.4 3 0 0 3 3 3 2 AAA domain TOBE PF03459.12 gi|345005509|ref|YP_004808362.1| - 2.3e-07 30.8 1.6 0.0026 17.8 0.0 2.7 2 0 0 2 2 2 2 TOBE domain AAA PF00004.24 gi|345005509|ref|YP_004808362.1| - 0.0013 18.9 0.0 0.0048 17.0 0.0 2.0 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Zeta_toxin PF06414.7 gi|345005509|ref|YP_004808362.1| - 0.0019 17.3 0.1 0.0073 15.4 0.0 1.9 2 1 0 2 2 2 1 Zeta toxin AAA_22 PF13401.1 gi|345005509|ref|YP_004808362.1| - 0.0023 18.0 2.0 0.031 14.3 1.4 2.2 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|345005509|ref|YP_004808362.1| - 0.0035 17.2 0.1 0.016 15.1 0.1 2.3 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|345005509|ref|YP_004808362.1| - 0.0046 16.9 0.0 0.015 15.2 0.0 1.8 2 0 0 2 2 2 1 AAA ATPase domain AAA_5 PF07728.9 gi|345005509|ref|YP_004808362.1| - 0.0095 15.6 0.2 1.8 8.2 0.1 2.5 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) Rad17 PF03215.10 gi|345005509|ref|YP_004808362.1| - 0.013 14.2 0.0 0.018 13.7 0.0 1.2 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein Myosin_N PF02736.14 gi|345005509|ref|YP_004808362.1| - 0.02 14.5 0.6 0.08 12.6 0.1 2.2 2 0 0 2 2 2 0 Myosin N-terminal SH3-like domain AAA_14 PF13173.1 gi|345005509|ref|YP_004808362.1| - 0.049 13.5 0.0 0.099 12.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.1 gi|345005509|ref|YP_004808362.1| - 0.085 12.2 0.0 0.28 10.5 0.0 1.8 2 0 0 2 2 2 0 AAA domain DUF258 PF03193.11 gi|345005509|ref|YP_004808362.1| - 0.089 11.9 0.0 0.15 11.1 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_17 PF13207.1 gi|345005509|ref|YP_004808362.1| - 0.13 13.0 0.1 0.32 11.8 0.1 2.0 1 1 0 1 1 1 0 AAA domain BPD_transp_1 PF00528.17 gi|345005510|ref|YP_004808363.1| - 1.9e-08 34.0 36.8 6.8e-07 28.9 25.4 2.7 1 1 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component DUF4013 PF13197.1 gi|345005510|ref|YP_004808363.1| - 0.0015 17.9 3.1 0.0015 17.9 2.1 3.7 2 1 2 4 4 4 1 Protein of unknown function (DUF4013) DUF2484 PF10658.4 gi|345005510|ref|YP_004808363.1| - 4.8 7.3 10.5 0.19 11.8 1.5 2.8 2 1 0 2 2 2 0 Protein of unknown function (DUF2484) BPD_transp_1 PF00528.17 gi|345005511|ref|YP_004808364.1| - 2.5e-14 53.2 19.3 2.5e-14 53.2 13.4 2.1 1 1 1 2 2 2 2 Binding-protein-dependent transport system inner membrane component Peripla_BP_6 PF13458.1 gi|345005512|ref|YP_004808365.1| - 5.5e-40 137.7 10.6 7.5e-40 137.3 7.3 1.1 1 0 0 1 1 1 1 Periplasmic binding protein ANF_receptor PF01094.23 gi|345005512|ref|YP_004808365.1| - 4.4e-24 84.9 0.1 6.2e-24 84.4 0.1 1.2 1 0 0 1 1 1 1 Receptor family ligand binding region Peripla_BP_5 PF13433.1 gi|345005512|ref|YP_004808365.1| - 7e-12 44.7 0.9 1.4e-07 30.5 0.1 2.2 2 0 0 2 2 2 2 Periplasmic binding protein domain TAT_signal PF10518.4 gi|345005512|ref|YP_004808365.1| - 0.0055 16.6 1.2 0.0055 16.6 0.8 2.3 2 0 0 2 2 2 1 TAT (twin-arginine translocation) pathway signal sequence BPD_transp_2 PF02653.11 gi|345005513|ref|YP_004808366.1| - 4.3e-44 150.4 33.8 5e-44 150.2 23.4 1.0 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component BPD_transp_2 PF02653.11 gi|345005514|ref|YP_004808367.1| - 1.8e-45 154.9 28.8 1.8e-45 154.9 20.0 1.6 2 0 0 2 2 2 1 Branched-chain amino acid transport system / permease component DUF4231 PF14015.1 gi|345005514|ref|YP_004808367.1| - 8.5 6.3 7.3 38 4.3 0.5 3.3 3 0 0 3 3 3 0 Protein of unknown function (DUF4231) ABC_tran PF00005.22 gi|345005515|ref|YP_004808368.1| - 2.6e-30 105.5 0.0 3.5e-30 105.0 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|345005515|ref|YP_004808368.1| - 3.9e-11 43.4 0.0 0.00028 20.9 0.0 2.1 2 0 0 2 2 2 2 AAA domain BCA_ABC_TP_C PF12399.3 gi|345005515|ref|YP_004808368.1| - 1.2e-08 34.4 0.5 2.6e-08 33.3 0.1 1.8 2 0 0 2 2 2 1 Branched-chain amino acid ATP-binding cassette transporter SMC_N PF02463.14 gi|345005515|ref|YP_004808368.1| - 5.1e-05 22.6 0.0 8.6e-05 21.8 0.0 1.3 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|345005515|ref|YP_004808368.1| - 0.0013 18.2 0.1 0.0027 17.1 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|345005515|ref|YP_004808368.1| - 0.0058 16.9 0.2 0.0087 16.3 0.1 1.2 1 0 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|345005515|ref|YP_004808368.1| - 0.022 13.9 0.0 0.034 13.3 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_15 PF13175.1 gi|345005515|ref|YP_004808368.1| - 0.13 11.2 0.1 2.6 6.9 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain ABC_tran PF00005.22 gi|345005516|ref|YP_004808369.1| - 2.4e-29 102.3 0.0 3.3e-29 101.9 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|345005516|ref|YP_004808369.1| - 4.2e-12 46.6 0.0 9.6e-10 38.8 0.0 2.1 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|345005516|ref|YP_004808369.1| - 6e-05 23.1 0.2 0.00097 19.1 0.2 2.0 1 1 0 1 1 1 1 AAA ATPase domain SMC_N PF02463.14 gi|345005516|ref|YP_004808369.1| - 0.00055 19.2 0.1 0.046 12.9 0.0 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|345005516|ref|YP_004808369.1| - 0.00075 18.9 0.0 0.0013 18.1 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.1 gi|345005516|ref|YP_004808369.1| - 0.001 19.1 0.1 0.0094 16.0 0.1 2.0 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.1 gi|345005516|ref|YP_004808369.1| - 0.0014 18.9 0.1 0.002 18.4 0.1 1.2 1 0 0 1 1 1 1 AAA domain AAA_30 PF13604.1 gi|345005516|ref|YP_004808369.1| - 0.0018 17.9 0.0 0.013 15.1 0.0 1.9 2 0 0 2 2 2 1 AAA domain MutS_V PF00488.16 gi|345005516|ref|YP_004808369.1| - 0.025 14.0 0.0 0.039 13.3 0.0 1.2 1 0 0 1 1 1 0 MutS domain V AAA_33 PF13671.1 gi|345005516|ref|YP_004808369.1| - 0.035 13.9 0.1 0.047 13.5 0.0 1.6 1 1 0 1 1 1 0 AAA domain IstB_IS21 PF01695.12 gi|345005516|ref|YP_004808369.1| - 0.041 13.2 0.0 0.36 10.2 0.0 2.0 2 0 0 2 2 2 0 IstB-like ATP binding protein Mg_chelatase PF01078.16 gi|345005516|ref|YP_004808369.1| - 0.07 12.2 0.0 0.16 11.0 0.0 1.5 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_15 PF13175.1 gi|345005516|ref|YP_004808369.1| - 0.077 12.0 0.0 0.99 8.3 0.0 1.9 2 0 0 2 2 2 0 AAA ATPase domain AAA_17 PF13207.1 gi|345005516|ref|YP_004808369.1| - 0.082 13.7 0.2 0.2 12.4 0.1 1.6 1 0 0 1 1 1 0 AAA domain AAA PF00004.24 gi|345005516|ref|YP_004808369.1| - 0.082 13.1 0.3 1.2 9.3 0.2 2.2 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Zeta_toxin PF06414.7 gi|345005516|ref|YP_004808369.1| - 0.084 11.9 0.0 0.13 11.3 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin AAA_25 PF13481.1 gi|345005516|ref|YP_004808369.1| - 0.11 11.8 0.2 0.27 10.6 0.1 1.7 1 1 0 1 1 1 0 AAA domain DUF258 PF03193.11 gi|345005516|ref|YP_004808369.1| - 0.11 11.6 0.1 0.2 10.8 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 T2SE PF00437.15 gi|345005516|ref|YP_004808369.1| - 0.15 10.9 0.1 0.42 9.4 0.0 1.7 2 0 0 2 2 2 0 Type II/IV secretion system protein EamA PF00892.15 gi|345005517|ref|YP_004808370.1| - 2.2e-39 134.3 28.0 1.2e-19 70.5 4.9 2.1 2 0 0 2 2 2 2 EamA-like transporter family EmrE PF13536.1 gi|345005517|ref|YP_004808370.1| - 0.013 15.6 5.6 0.013 15.6 3.9 3.8 1 1 3 4 4 4 0 Multidrug resistance efflux transporter TPT PF03151.11 gi|345005517|ref|YP_004808370.1| - 0.042 13.5 25.0 0.039 13.6 2.9 3.4 2 2 1 3 3 3 0 Triose-phosphate Transporter family Borrelia_P13 PF05628.7 gi|345005517|ref|YP_004808370.1| - 4.7 7.0 7.5 0.59 9.9 2.2 1.8 2 0 0 2 2 2 0 Borrelia membrane protein P13 HATPase_c_3 PF13589.1 gi|345005518|ref|YP_004808371.1| - 2e-07 30.7 0.0 4.5e-07 29.5 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c PF02518.21 gi|345005518|ref|YP_004808371.1| - 0.0008 19.0 0.0 0.0035 17.0 0.0 2.0 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SprT-like PF10263.4 gi|345005518|ref|YP_004808371.1| - 0.023 14.3 0.0 0.057 13.0 0.0 1.6 1 0 0 1 1 1 0 SprT-like family VWA_2 PF13519.1 gi|345005518|ref|YP_004808371.1| - 0.046 13.8 0.3 0.081 13.0 0.2 1.3 1 0 0 1 1 1 0 von Willebrand factor type A domain Acylphosphatase PF00708.13 gi|345005519|ref|YP_004808372.1| - 7.5e-27 93.2 0.4 8e-27 93.1 0.3 1.0 1 0 0 1 1 1 1 Acylphosphatase PGM_PMM_I PF02878.11 gi|345005520|ref|YP_004808373.1| - 2.9e-31 107.7 0.7 6e-31 106.7 0.5 1.5 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.11 gi|345005520|ref|YP_004808373.1| - 9e-23 80.5 0.9 3.1e-22 78.8 0.1 2.3 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_IV PF00408.15 gi|345005520|ref|YP_004808373.1| - 3.2e-10 39.8 0.2 1.7e-09 37.5 0.0 2.3 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain PGM_PMM_III PF02880.11 gi|345005520|ref|YP_004808373.1| - 0.0026 17.7 0.0 0.0065 16.4 0.0 1.7 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III FlgD_ig PF13860.1 gi|345005520|ref|YP_004808373.1| - 0.016 14.9 0.5 1 9.1 0.1 2.9 2 1 1 3 3 3 0 FlgD Ig-like domain Spc7_N PF15402.1 gi|345005520|ref|YP_004808373.1| - 0.12 10.3 0.0 0.16 9.9 0.0 1.1 1 0 0 1 1 1 0 N-terminus of kinetochore NMS complex subunit Spc7 ABC_tran PF00005.22 gi|345005521|ref|YP_004808374.1| - 2.1e-44 151.1 0.0 7.4e-29 100.7 0.0 2.2 2 0 0 2 2 2 2 ABC transporter AAA_21 PF13304.1 gi|345005521|ref|YP_004808374.1| - 2.8e-12 47.2 0.0 4.3e-05 23.6 0.0 2.1 1 1 0 2 2 2 2 AAA domain AAA_29 PF13555.1 gi|345005521|ref|YP_004808374.1| - 3.7e-05 23.1 0.1 0.0081 15.6 0.0 2.7 2 0 0 2 2 2 1 P-loop containing region of AAA domain Bac_DnaA PF00308.13 gi|345005521|ref|YP_004808374.1| - 0.0016 18.0 0.4 0.0054 16.4 0.0 1.9 2 0 0 2 2 2 1 Bacterial dnaA protein DUF258 PF03193.11 gi|345005521|ref|YP_004808374.1| - 0.0046 16.1 0.0 0.052 12.7 0.0 2.2 2 0 0 2 2 2 1 Protein of unknown function, DUF258 AAA_15 PF13175.1 gi|345005521|ref|YP_004808374.1| - 0.0096 15.0 0.0 1.4 7.8 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_23 PF13476.1 gi|345005521|ref|YP_004808374.1| - 0.012 15.9 0.0 0.023 15.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain SMC_N PF02463.14 gi|345005521|ref|YP_004808374.1| - 0.033 13.4 0.1 0.77 8.9 0.0 2.7 2 1 0 2 2 2 0 RecF/RecN/SMC N terminal domain PduV-EutP PF10662.4 gi|345005521|ref|YP_004808374.1| - 0.039 13.4 0.0 0.15 11.5 0.0 1.8 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation AAA_30 PF13604.1 gi|345005521|ref|YP_004808374.1| - 0.056 13.0 0.9 0.32 10.5 0.0 2.3 3 0 0 3 3 3 0 AAA domain AAA_25 PF13481.1 gi|345005521|ref|YP_004808374.1| - 0.075 12.4 0.4 0.42 9.9 0.0 2.3 2 1 0 2 2 2 0 AAA domain AAA_22 PF13401.1 gi|345005521|ref|YP_004808374.1| - 0.15 12.1 0.1 2.8 8.0 0.0 2.4 2 0 0 2 2 2 0 AAA domain BPD_transp_2 PF02653.11 gi|345005522|ref|YP_004808375.1| - 4.3e-38 130.8 35.4 4.3e-38 130.8 24.6 1.8 2 0 0 2 2 2 1 Branched-chain amino acid transport system / permease component BPD_transp_2 PF02653.11 gi|345005523|ref|YP_004808376.1| - 1.2e-29 103.1 54.8 2.1e-28 99.0 17.5 2.7 2 1 0 3 3 3 2 Branched-chain amino acid transport system / permease component Adeno_E4 PF05385.6 gi|345005523|ref|YP_004808376.1| - 0.0046 16.8 0.3 0.0083 16.0 0.2 1.3 1 0 0 1 1 1 1 Mastadenovirus early E4 13 kDa protein FAD_binding_2 PF00890.19 gi|345005524|ref|YP_004808377.1| - 1.9e-13 50.0 0.6 4.3e-07 29.1 0.1 2.2 2 0 0 2 2 2 2 FAD binding domain DAO PF01266.19 gi|345005524|ref|YP_004808377.1| - 6.1e-13 48.4 4.2 9e-06 24.8 0.1 2.5 3 0 0 3 3 3 2 FAD dependent oxidoreductase Trp_halogenase PF04820.9 gi|345005524|ref|YP_004808377.1| - 6e-11 41.6 0.3 5e-07 28.7 0.0 2.2 2 0 0 2 2 2 2 Tryptophan halogenase FAD_oxidored PF12831.2 gi|345005524|ref|YP_004808377.1| - 3e-09 36.4 5.5 3.9e-08 32.8 3.8 2.2 1 1 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_3 PF01494.14 gi|345005524|ref|YP_004808377.1| - 6.4e-09 35.3 1.6 5.3e-08 32.2 1.1 2.4 1 1 0 1 1 1 1 FAD binding domain HI0933_like PF03486.9 gi|345005524|ref|YP_004808377.1| - 2.1e-06 26.5 0.3 0.00018 20.1 0.1 2.2 2 0 0 2 2 2 1 HI0933-like protein Pyr_redox PF00070.22 gi|345005524|ref|YP_004808377.1| - 2.4e-06 27.8 0.2 0.00036 20.8 0.1 2.6 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.12 gi|345005524|ref|YP_004808377.1| - 1e-05 24.7 0.1 2.4e-05 23.5 0.0 1.6 2 0 0 2 2 2 1 Thi4 family NAD_binding_8 PF13450.1 gi|345005524|ref|YP_004808377.1| - 1.1e-05 25.3 0.2 1.1e-05 25.3 0.1 2.5 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Pyr_redox_3 PF13738.1 gi|345005524|ref|YP_004808377.1| - 1.5e-05 25.1 0.0 2.5e-05 24.4 0.0 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_2 PF07992.9 gi|345005524|ref|YP_004808377.1| - 1.6e-05 24.9 1.0 4.6e-05 23.3 0.7 1.8 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.17 gi|345005524|ref|YP_004808377.1| - 1.7e-05 23.9 1.7 3.3e-05 22.9 1.2 1.5 1 1 0 1 1 1 1 Glucose inhibited division protein A Lycopene_cycl PF05834.7 gi|345005524|ref|YP_004808377.1| - 0.0016 17.4 0.4 0.33 9.8 0.2 2.2 2 0 0 2 2 2 2 Lycopene cyclase protein AlaDh_PNT_C PF01262.16 gi|345005524|ref|YP_004808377.1| - 0.032 13.7 0.1 0.063 12.8 0.0 1.4 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain 3HCDH_N PF02737.13 gi|345005524|ref|YP_004808377.1| - 0.041 13.5 0.0 0.071 12.7 0.0 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ApbA PF02558.11 gi|345005524|ref|YP_004808377.1| - 0.069 12.5 0.0 0.13 11.6 0.0 1.5 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA Peptidase_M20 PF01546.23 gi|345005525|ref|YP_004808378.1| - 4.5e-21 75.2 12.3 3.7e-20 72.2 8.5 2.0 1 1 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.9 gi|345005525|ref|YP_004808378.1| - 4.7e-14 52.0 0.4 1.3e-13 50.6 0.3 1.7 1 0 0 1 1 1 1 Peptidase dimerisation domain Ribosomal_S10 PF00338.17 gi|345005526|ref|YP_004808379.1| - 7.7e-10 38.4 0.0 8.9e-10 38.2 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S10p/S20e NUDIX PF00293.23 gi|345005527|ref|YP_004808380.1| - 1.2e-16 60.5 0.2 1.6e-16 60.1 0.1 1.1 1 0 0 1 1 1 1 NUDIX domain NTP_transferase PF00483.18 gi|345005529|ref|YP_004808382.1| - 7.2e-40 136.8 0.0 1.2e-39 136.1 0.0 1.3 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.2 gi|345005529|ref|YP_004808382.1| - 9.4e-16 58.2 0.3 2.2e-15 57.0 0.2 1.6 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep PF00132.19 gi|345005529|ref|YP_004808382.1| - 1e-12 46.9 10.4 0.00024 20.4 0.2 4.5 2 1 2 4 4 4 4 Bacterial transferase hexapeptide (six repeats) IspD PF01128.14 gi|345005529|ref|YP_004808382.1| - 0.00066 19.2 0.0 0.00093 18.7 0.0 1.2 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Hexapep_2 PF14602.1 gi|345005529|ref|YP_004808382.1| - 0.31 10.6 10.0 0.4 10.2 0.1 4.0 4 0 0 4 4 4 0 Hexapeptide repeat of succinyl-transferase Pyr_redox_2 PF07992.9 gi|345005530|ref|YP_004808383.1| - 7.9e-23 81.3 0.1 9.8e-23 81.0 0.0 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|345005530|ref|YP_004808383.1| - 1.3e-11 44.9 0.2 2.5e-07 30.9 0.0 2.2 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|345005530|ref|YP_004808383.1| - 5e-09 35.5 3.5 4.7e-06 25.7 0.9 2.3 1 1 1 2 2 2 2 FAD dependent oxidoreductase Pyr_redox PF00070.22 gi|345005530|ref|YP_004808383.1| - 3.2e-06 27.4 0.1 0.0088 16.4 0.1 2.5 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|345005530|ref|YP_004808383.1| - 1.1e-05 24.0 1.1 0.00061 18.3 0.3 2.1 2 0 0 2 2 2 1 HI0933-like protein NAD_binding_8 PF13450.1 gi|345005530|ref|YP_004808383.1| - 6.6e-05 22.8 0.2 0.00016 21.6 0.1 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain K_oxygenase PF13434.1 gi|345005530|ref|YP_004808383.1| - 6.9e-05 21.9 0.0 0.00026 20.0 0.0 1.7 2 0 0 2 2 2 1 L-lysine 6-monooxygenase (NADPH-requiring) FAD_binding_3 PF01494.14 gi|345005530|ref|YP_004808383.1| - 0.00014 21.0 0.6 0.00023 20.3 0.4 1.3 1 0 0 1 1 1 1 FAD binding domain GIDA PF01134.17 gi|345005530|ref|YP_004808383.1| - 0.00015 20.7 0.9 0.00025 20.0 0.5 1.5 1 1 0 1 1 1 1 Glucose inhibited division protein A FAD_oxidored PF12831.2 gi|345005530|ref|YP_004808383.1| - 0.00048 19.3 0.3 0.00048 19.3 0.2 1.8 2 0 0 2 2 2 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|345005530|ref|YP_004808383.1| - 0.00075 18.4 3.3 0.0015 17.4 0.2 2.4 2 1 1 3 3 3 1 FAD binding domain Thi4 PF01946.12 gi|345005530|ref|YP_004808383.1| - 0.0073 15.4 0.2 0.14 11.2 0.0 2.2 2 0 0 2 2 2 1 Thi4 family HCBP_related PF06594.6 gi|345005530|ref|YP_004808383.1| - 0.042 13.4 0.1 0.18 11.4 0.1 2.1 2 0 0 2 2 2 0 Haemolysin-type calcium binding protein related domain UDPG_MGDP_dh_N PF03721.9 gi|345005530|ref|YP_004808383.1| - 0.049 13.0 0.3 0.11 11.8 0.2 1.6 1 1 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 3HCDH_N PF02737.13 gi|345005530|ref|YP_004808383.1| - 0.13 11.9 0.5 0.46 10.1 0.3 2.0 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_9 PF13454.1 gi|345005530|ref|YP_004808383.1| - 0.47 10.2 5.8 4.5 7.0 0.0 2.7 2 1 0 3 3 2 0 FAD-NAD(P)-binding zf-C2H2_jaz PF12171.3 gi|345005530|ref|YP_004808383.1| - 0.83 9.8 2.8 0.46 10.6 0.3 1.8 2 0 0 2 2 2 0 Zinc-finger double-stranded RNA-binding Lactamase_B PF00753.22 gi|345005531|ref|YP_004808384.1| - 7.1e-27 94.3 2.4 1.5e-26 93.2 1.6 1.6 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|345005531|ref|YP_004808384.1| - 2.2e-08 33.8 0.0 2.2e-08 33.8 0.0 1.4 2 0 0 2 2 2 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.1 gi|345005531|ref|YP_004808384.1| - 0.24 11.1 2.5 0.19 11.4 0.3 1.9 2 1 0 2 2 2 0 Beta-lactamase superfamily domain DnaJ PF00226.26 gi|345005532|ref|YP_004808385.1| - 5.6e-19 67.6 0.3 8.4e-19 67.0 0.2 1.3 1 0 0 1 1 1 1 DnaJ domain Cytochrom_B_N_2 PF13631.1 gi|345005532|ref|YP_004808385.1| - 0.12 12.1 1.9 0.23 11.2 1.3 1.4 1 0 0 1 1 1 0 Cytochrome b(N-terminal)/b6/petB DUF3529 PF12046.3 gi|345005532|ref|YP_004808385.1| - 0.37 9.8 2.2 0.71 8.8 1.5 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3529) Macoilin PF09726.4 gi|345005532|ref|YP_004808385.1| - 1.3 7.1 19.5 1.7 6.8 13.5 1.1 1 0 0 1 1 1 0 Transmembrane protein Plasmodium_Vir PF05795.6 gi|345005532|ref|YP_004808385.1| - 3.2 6.8 5.0 4.5 6.3 3.5 1.1 1 0 0 1 1 1 0 Plasmodium vivax Vir protein PAP1 PF08601.5 gi|345005532|ref|YP_004808385.1| - 7.8 6.0 19.2 11 5.5 13.3 1.1 1 0 0 1 1 1 0 Transcription factor PAP1 UDG PF03167.14 gi|345005533|ref|YP_004808386.1| - 2.3e-10 40.1 0.0 2.7e-10 39.8 0.0 1.1 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily DUF387 PF04079.11 gi|345005534|ref|YP_004808387.1| - 0.051 12.9 0.0 0.63 9.3 0.0 2.1 2 0 0 2 2 2 0 Putative transcriptional regulators (Ypuh-like) PqqD PF05402.7 gi|345005534|ref|YP_004808387.1| - 0.081 12.9 0.0 0.16 12.0 0.0 1.6 1 0 0 1 1 1 0 Coenzyme PQQ synthesis protein D (PqqD) AlkA_N PF06029.6 gi|345005534|ref|YP_004808387.1| - 0.11 12.5 0.0 0.17 11.9 0.0 1.3 1 0 0 1 1 1 0 AlkA N-terminal domain GntR PF00392.16 gi|345005534|ref|YP_004808387.1| - 0.11 11.9 0.1 0.5 9.8 0.0 2.0 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family HD PF01966.17 gi|345005535|ref|YP_004808388.1| - 2.9e-10 40.2 1.7 6.9e-10 38.9 1.2 1.6 1 0 0 1 1 1 1 HD domain AhpC-TSA PF00578.16 gi|345005536|ref|YP_004808389.1| - 1.4e-26 92.6 0.0 1.6e-26 92.4 0.0 1.0 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.5 gi|345005536|ref|YP_004808389.1| - 1.1e-19 70.3 0.0 1.4e-19 70.0 0.0 1.1 1 0 0 1 1 1 1 Redoxin AhpC-TSA_2 PF13911.1 gi|345005536|ref|YP_004808389.1| - 0.025 14.5 0.0 2.1 8.3 0.0 2.1 1 1 1 2 2 2 0 AhpC/TSA antioxidant enzyme DUF899 PF05988.7 gi|345005536|ref|YP_004808389.1| - 0.058 12.8 0.0 0.072 12.5 0.0 1.1 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF899) MttA_Hcf106 PF02416.11 gi|345005537|ref|YP_004808390.1| - 3.9e-15 54.6 2.7 6.5e-15 53.9 1.9 1.5 1 1 0 1 1 1 1 mttA/Hcf106 family FHIPEP PF00771.15 gi|345005537|ref|YP_004808390.1| - 0.013 13.8 0.0 0.013 13.8 0.0 1.0 1 0 0 1 1 1 0 FHIPEP family IncA PF04156.9 gi|345005537|ref|YP_004808390.1| - 0.022 14.3 2.3 0.037 13.6 1.6 1.3 1 1 0 1 1 1 0 IncA protein TRAP_alpha PF03896.11 gi|345005537|ref|YP_004808390.1| - 0.15 11.0 3.0 0.17 10.8 2.1 1.1 1 0 0 1 1 1 0 Translocon-associated protein (TRAP), alpha subunit T2SE PF00437.15 gi|345005538|ref|YP_004808391.1| - 1.2e-44 152.2 0.0 2e-44 151.5 0.0 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_29 PF13555.1 gi|345005538|ref|YP_004808391.1| - 0.00021 20.7 0.1 0.0004 19.8 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain T2SF PF00482.18 gi|345005539|ref|YP_004808392.1| - 3.5e-25 88.3 13.3 1.1e-12 47.9 0.3 3.1 3 0 0 3 3 3 2 Type II secretion system (T2SS), protein F PAS_8 PF13188.1 gi|345005541|ref|YP_004808394.1| - 0.023 14.5 0.2 6.9 6.6 0.0 2.6 3 0 0 3 3 3 0 PAS domain DUF1628 PF07790.6 gi|345005544|ref|YP_004808397.1| - 0.048 14.4 1.0 0.048 14.4 0.7 2.7 3 0 0 3 3 3 0 Protein of unknown function (DUF1628) EpuA PF11772.3 gi|345005544|ref|YP_004808397.1| - 0.11 11.9 4.6 0.2 11.1 3.2 1.4 1 0 0 1 1 1 0 DNA-directed RNA polymerase subunit beta Amidase PF01425.16 gi|345005545|ref|YP_004808398.1| - 8.7e-102 341.2 0.1 1e-101 340.9 0.1 1.1 1 0 0 1 1 1 1 Amidase PfkB PF00294.19 gi|345005546|ref|YP_004808399.1| - 2.6e-34 118.7 0.6 6.1e-34 117.5 0.2 1.7 2 1 0 2 2 2 1 pfkB family carbohydrate kinase Carb_kinase PF01256.12 gi|345005546|ref|YP_004808399.1| - 0.065 12.5 0.0 0.14 11.4 0.0 1.5 1 1 0 1 1 1 0 Carbohydrate kinase Gly-zipper_OmpA PF13436.1 gi|345005547|ref|YP_004808400.1| - 0.00014 21.4 5.6 0.00014 21.4 3.9 1.1 1 0 0 1 1 1 1 Glycine-zipper containing OmpA-like membrane domain Gly-zipper_YMGG PF13441.1 gi|345005547|ref|YP_004808400.1| - 0.0031 16.9 18.1 0.0043 16.5 12.5 1.2 1 0 0 1 1 1 1 YMGG-like Gly-zipper Rick_17kDa_Anti PF05433.10 gi|345005547|ref|YP_004808400.1| - 0.021 14.4 20.5 0.027 14.1 14.2 1.2 1 0 0 1 1 1 0 Glycine zipper 2TM domain DUF456 PF04306.8 gi|345005547|ref|YP_004808400.1| - 0.023 14.7 1.2 0.026 14.5 0.8 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF456) DUF3169 PF11368.3 gi|345005547|ref|YP_004808400.1| - 0.038 13.1 1.1 0.041 13.0 0.7 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3169) TraT PF05818.7 gi|345005547|ref|YP_004808400.1| - 0.09 12.1 2.5 0.091 12.1 1.7 1.1 1 0 0 1 1 1 0 Enterobacterial TraT complement resistance protein Gly-zipper_Omp PF13488.1 gi|345005547|ref|YP_004808400.1| - 0.2 11.2 21.2 0.22 11.1 6.8 1.8 1 1 1 2 2 2 0 Glycine zipper PT-VENN PF04829.8 gi|345005547|ref|YP_004808400.1| - 1.7 8.2 8.5 0.47 10.0 3.9 1.8 2 0 0 2 2 2 0 Pre-toxin domain with VENN motif GSDH PF07995.6 gi|345005548|ref|YP_004808401.1| - 7.4e-44 150.1 0.1 9.1e-44 149.8 0.0 1.1 1 0 0 1 1 1 1 Glucose / Sorbosone dehydrogenase UCR_Fe-S_N PF10399.4 gi|345005548|ref|YP_004808401.1| - 0.00032 19.8 0.3 0.00061 18.9 0.2 1.5 1 0 0 1 1 1 1 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal TAT_signal PF10518.4 gi|345005548|ref|YP_004808401.1| - 10 6.4 7.8 2 8.6 2.3 2.3 2 0 0 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence DUF1628 PF07790.6 gi|345005550|ref|YP_004808403.1| - 7.5e-25 87.4 3.9 7.5e-25 87.4 2.7 1.7 2 0 0 2 2 2 1 Protein of unknown function (DUF1628) DUF945 PF06097.6 gi|345005550|ref|YP_004808403.1| - 4.3 6.0 6.9 1.3 7.7 0.6 2.0 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF945) DDE_Tnp_1 PF01609.16 gi|345005551|ref|YP_004808404.1| - 3e-21 75.9 0.0 4.1e-21 75.5 0.0 1.1 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_6 PF13751.1 gi|345005551|ref|YP_004808404.1| - 0.0062 16.5 0.0 0.011 15.6 0.0 1.3 1 0 0 1 1 1 1 Transposase DDE domain zf-ribbon_3 PF13248.1 gi|345005552|ref|YP_004808405.1| - 0.025 13.7 0.9 2.1 7.6 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain TniQ PF06527.6 gi|345005552|ref|YP_004808405.1| - 0.046 13.9 0.2 0.046 13.9 0.1 2.1 2 1 1 3 3 3 0 TniQ DZR PF12773.2 gi|345005552|ref|YP_004808405.1| - 0.08 12.7 1.4 1.7 8.5 0.1 2.3 2 0 0 2 2 2 0 Double zinc ribbon UPF0547 PF10571.4 gi|345005552|ref|YP_004808405.1| - 0.23 11.1 5.2 2.8 7.7 0.5 2.4 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zinc_ribbon_4 PF13717.1 gi|345005552|ref|YP_004808405.1| - 1 9.1 4.2 1.9 8.2 0.3 2.8 2 1 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|345005552|ref|YP_004808405.1| - 1.1 8.9 4.5 1.9 8.1 0.3 2.8 2 1 0 2 2 2 0 zinc-ribbon domain RRN7 PF11781.3 gi|345005552|ref|YP_004808405.1| - 3.1 7.3 7.0 7.2 6.2 1.4 3.0 3 0 0 3 3 3 0 RNA polymerase I-specific transcription initiation factor Rrn7 PRA-CH PF01502.13 gi|345005554|ref|YP_004808407.1| - 0.097 12.3 0.2 0.098 12.2 0.1 1.1 1 0 0 1 1 1 0 Phosphoribosyl-AMP cyclohydrolase Phage_Coat_B PF05356.6 gi|345005555|ref|YP_004808408.1| - 0.054 13.1 1.4 0.17 11.6 0.0 2.0 1 1 1 2 2 2 0 Phage Coat protein B Aldedh PF00171.17 gi|345005556|ref|YP_004808409.1| - 9.1e-17 60.5 0.3 1.4e-16 59.8 0.2 1.2 1 0 0 1 1 1 1 Aldehyde dehydrogenase family AMP-binding_C_2 PF14535.1 gi|345005558|ref|YP_004808411.1| - 8.9e-23 80.1 0.1 2e-22 79.0 0.1 1.6 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain AMP-binding PF00501.23 gi|345005558|ref|YP_004808411.1| - 7.1e-21 74.0 0.1 1.2e-20 73.3 0.1 1.3 1 1 0 1 1 1 1 AMP-binding enzyme LuxE PF04443.7 gi|345005558|ref|YP_004808411.1| - 0.0003 19.5 0.0 0.0011 17.6 0.0 1.8 2 0 0 2 2 2 1 Acyl-protein synthetase, LuxE GH3 PF03321.8 gi|345005558|ref|YP_004808411.1| - 0.15 10.5 0.0 0.58 8.6 0.0 1.9 2 0 0 2 2 2 0 GH3 auxin-responsive promoter PcrB PF01884.12 gi|345005560|ref|YP_004808413.1| - 4e-20 72.0 0.0 2.1e-19 69.7 0.0 1.9 1 1 0 1 1 1 1 PcrB family His_biosynth PF00977.16 gi|345005560|ref|YP_004808413.1| - 0.0015 17.8 0.1 0.0028 16.9 0.0 1.4 1 0 0 1 1 1 1 Histidine biosynthesis protein FMN_dh PF01070.13 gi|345005560|ref|YP_004808413.1| - 0.013 14.3 1.3 0.024 13.5 0.9 1.4 1 0 0 1 1 1 0 FMN-dependent dehydrogenase DUF1508 PF07411.7 gi|345005562|ref|YP_004808415.1| - 4.7e-22 77.1 0.4 5.6e-22 76.9 0.3 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1508) 4HBT_2 PF13279.1 gi|345005563|ref|YP_004808416.1| - 2.2e-18 66.8 0.0 2.7e-18 66.5 0.0 1.0 1 0 0 1 1 1 1 Thioesterase-like superfamily 4HBT PF03061.17 gi|345005563|ref|YP_004808416.1| - 3.8e-13 49.3 0.0 5e-13 48.9 0.0 1.2 1 0 0 1 1 1 1 Thioesterase superfamily Acyl-ACP_TE PF01643.12 gi|345005563|ref|YP_004808416.1| - 1.1e-10 40.8 0.4 7.4e-06 25.0 0.1 2.1 1 1 1 2 2 2 2 Acyl-ACP thioesterase TFIIB PF00382.14 gi|345005564|ref|YP_004808417.1| - 4.5e-05 23.1 0.1 0.00011 21.9 0.1 1.6 1 1 0 1 1 1 1 Transcription factor TFIIB repeat HTH_28 PF13518.1 gi|345005564|ref|YP_004808417.1| - 0.039 13.9 0.0 0.13 12.3 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain CTP_transf_2 PF01467.21 gi|345005565|ref|YP_004808418.1| - 4.2e-14 52.8 0.0 1.4e-12 47.9 0.0 2.0 1 1 0 1 1 1 1 Cytidylyltransferase FAD_syn PF06574.7 gi|345005565|ref|YP_004808418.1| - 0.002 17.7 0.4 0.024 14.2 0.2 2.3 1 1 0 2 2 2 1 FAD synthetase TrmB PF01978.14 gi|345005566|ref|YP_004808419.1| - 5.6e-07 29.1 0.1 8.3e-07 28.6 0.1 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.1 gi|345005566|ref|YP_004808419.1| - 7.5e-05 22.0 0.0 0.00012 21.4 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.2 gi|345005566|ref|YP_004808419.1| - 0.0026 17.5 0.0 0.0048 16.6 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain GntR PF00392.16 gi|345005566|ref|YP_004808419.1| - 0.0077 15.6 0.1 0.016 14.6 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_5 PF01022.15 gi|345005566|ref|YP_004808419.1| - 0.016 14.8 0.0 0.027 14.1 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_IclR PF09339.5 gi|345005566|ref|YP_004808419.1| - 0.029 13.9 0.0 0.05 13.1 0.0 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain TFIIE_alpha PF02002.12 gi|345005566|ref|YP_004808419.1| - 0.06 12.8 0.0 0.084 12.3 0.0 1.3 1 0 0 1 1 1 0 TFIIE alpha subunit HTH_Tnp_Tc3_2 PF01498.13 gi|345005566|ref|YP_004808419.1| - 0.095 12.7 0.0 0.14 12.1 0.0 1.3 1 0 0 1 1 1 0 Transposase SprB PF13573.1 gi|345005566|ref|YP_004808419.1| - 0.16 11.6 4.7 0.19 11.3 1.0 2.2 2 0 0 2 2 2 0 SprB repeat HATPase_c PF02518.21 gi|345005567|ref|YP_004808420.1| - 7.7e-20 70.6 0.2 1.5e-19 69.7 0.1 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.20 gi|345005567|ref|YP_004808420.1| - 6.2e-12 45.3 0.4 2.6e-11 43.3 0.3 2.2 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain PAS_4 PF08448.5 gi|345005567|ref|YP_004808420.1| - 1.9e-09 37.5 0.6 9.2e-09 35.3 0.3 2.4 2 0 0 2 2 2 1 PAS fold GAF_2 PF13185.1 gi|345005567|ref|YP_004808420.1| - 1.2e-07 32.3 0.7 5.8e-07 30.1 0.1 2.3 2 0 0 2 2 2 1 GAF domain PAS_9 PF13426.1 gi|345005567|ref|YP_004808420.1| - 5.5e-07 29.9 0.0 2.2e-06 28.0 0.0 2.0 2 0 0 2 2 2 1 PAS domain GAF_3 PF13492.1 gi|345005567|ref|YP_004808420.1| - 7.2e-07 29.3 0.1 2e-06 27.9 0.1 1.7 1 0 0 1 1 1 1 GAF domain DUF2930 PF11152.3 gi|345005567|ref|YP_004808420.1| - 0.0028 16.8 0.0 0.0045 16.1 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF2930) HATPase_c_2 PF13581.1 gi|345005567|ref|YP_004808420.1| - 0.0088 15.8 0.0 0.021 14.6 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c_3 PF13589.1 gi|345005567|ref|YP_004808420.1| - 0.02 14.5 0.0 0.056 13.1 0.0 1.7 2 0 0 2 2 2 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABC_tran PF00005.22 gi|345005568|ref|YP_004808421.1| - 3.8e-39 134.1 0.0 8e-39 133.0 0.0 1.6 1 0 0 1 1 1 1 ABC transporter ABC_membrane PF00664.18 gi|345005568|ref|YP_004808421.1| - 7.1e-37 127.3 6.1 8.6e-37 127.0 4.2 1.1 1 0 0 1 1 1 1 ABC transporter transmembrane region SMC_N PF02463.14 gi|345005568|ref|YP_004808421.1| - 8.2e-06 25.2 0.1 0.00039 19.7 0.0 2.2 1 1 1 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_21 PF13304.1 gi|345005568|ref|YP_004808421.1| - 8e-05 22.7 0.0 0.0017 18.4 0.0 2.2 1 1 0 1 1 1 1 AAA domain DUF2107 PF09880.4 gi|345005568|ref|YP_004808421.1| - 0.00012 21.8 0.9 0.0003 20.6 0.6 1.6 1 0 0 1 1 1 1 Predicted membrane protein (DUF2107) AAA_16 PF13191.1 gi|345005568|ref|YP_004808421.1| - 0.00016 21.7 0.3 0.00034 20.6 0.2 1.5 1 0 0 1 1 1 1 AAA ATPase domain AAA_17 PF13207.1 gi|345005568|ref|YP_004808421.1| - 0.00049 20.9 0.3 0.0016 19.2 0.1 2.2 2 1 0 2 2 1 1 AAA domain AAA_22 PF13401.1 gi|345005568|ref|YP_004808421.1| - 0.0012 18.9 0.4 0.009 16.1 0.3 2.2 1 1 0 1 1 1 1 AAA domain ABC_ATPase PF09818.4 gi|345005568|ref|YP_004808421.1| - 0.0013 17.3 0.3 0.01 14.4 0.0 2.0 2 0 0 2 2 2 1 Predicted ATPase of the ABC class AAA_29 PF13555.1 gi|345005568|ref|YP_004808421.1| - 0.0016 17.9 0.0 0.0039 16.6 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_30 PF13604.1 gi|345005568|ref|YP_004808421.1| - 0.0021 17.6 0.1 0.011 15.2 0.0 2.0 1 1 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|345005568|ref|YP_004808421.1| - 0.0036 16.4 0.0 0.0062 15.7 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 Zeta_toxin PF06414.7 gi|345005568|ref|YP_004808421.1| - 0.004 16.2 0.2 0.012 14.7 0.0 1.8 2 0 0 2 2 2 1 Zeta toxin AAA_33 PF13671.1 gi|345005568|ref|YP_004808421.1| - 0.014 15.3 0.1 0.054 13.3 0.0 2.1 2 0 0 2 2 1 0 AAA domain AAA_10 PF12846.2 gi|345005568|ref|YP_004808421.1| - 0.015 14.7 0.1 0.076 12.4 0.0 2.0 2 0 0 2 2 2 0 AAA-like domain AAA PF00004.24 gi|345005568|ref|YP_004808421.1| - 0.015 15.4 0.1 0.19 11.9 0.0 2.4 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) DUF2794 PF10984.3 gi|345005568|ref|YP_004808421.1| - 0.028 14.2 0.0 0.087 12.7 0.0 1.8 2 0 0 2 2 1 0 Protein of unknown function (DUF2794) AAA_5 PF07728.9 gi|345005568|ref|YP_004808421.1| - 0.032 13.9 0.4 0.32 10.7 0.3 2.4 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_23 PF13476.1 gi|345005568|ref|YP_004808421.1| - 0.037 14.3 0.0 0.081 13.2 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.1 gi|345005568|ref|YP_004808421.1| - 0.044 14.0 0.1 0.044 14.0 0.1 2.3 3 1 0 3 3 1 0 AAA domain NTPase_1 PF03266.10 gi|345005568|ref|YP_004808421.1| - 0.05 13.3 0.1 6.6 6.4 0.0 2.3 1 1 1 2 2 2 0 NTPase AAA_14 PF13173.1 gi|345005568|ref|YP_004808421.1| - 0.062 13.2 0.0 0.55 10.1 0.0 2.4 2 0 0 2 2 2 0 AAA domain AAA_25 PF13481.1 gi|345005568|ref|YP_004808421.1| - 0.065 12.6 0.7 0.24 10.8 0.5 2.0 1 1 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.18 gi|345005568|ref|YP_004808421.1| - 0.072 13.0 0.0 0.34 10.8 0.0 2.2 2 0 0 2 2 1 0 50S ribosome-binding GTPase ACR_tran PF00873.14 gi|345005568|ref|YP_004808421.1| - 0.077 10.4 0.3 0.12 9.7 0.2 1.2 1 0 0 1 1 1 0 AcrB/AcrD/AcrF family IstB_IS21 PF01695.12 gi|345005568|ref|YP_004808421.1| - 0.092 12.1 0.1 3.6 6.9 0.0 2.3 2 0 0 2 2 2 0 IstB-like ATP binding protein NACHT PF05729.7 gi|345005568|ref|YP_004808421.1| - 0.11 12.1 0.5 0.34 10.5 0.0 2.0 2 0 0 2 2 2 0 NACHT domain AAA_19 PF13245.1 gi|345005568|ref|YP_004808421.1| - 0.13 11.9 0.0 0.46 10.2 0.0 1.9 1 0 0 1 1 1 0 Part of AAA domain DUF87 PF01935.12 gi|345005568|ref|YP_004808421.1| - 0.13 12.0 0.1 0.41 10.4 0.0 1.8 1 0 0 1 1 1 0 Domain of unknown function DUF87 GerPC PF10737.4 gi|345005569|ref|YP_004808422.1| - 6.2e-06 26.0 10.4 0.0012 18.6 3.2 2.2 1 1 1 2 2 2 2 Spore germination protein GerPC DUF445 PF04286.7 gi|345005569|ref|YP_004808422.1| - 3e-05 23.7 23.0 0.00026 20.6 16.0 2.3 1 1 0 1 1 1 1 Protein of unknown function (DUF445) YpjP PF14005.1 gi|345005569|ref|YP_004808422.1| - 3.4e-05 23.6 18.4 0.014 15.1 2.3 3.5 1 1 3 4 4 4 4 YpjP-like protein COMPASS-Shg1 PF05205.7 gi|345005569|ref|YP_004808422.1| - 0.0016 18.6 13.8 1e+02 3.2 9.5 4.0 1 1 0 1 1 1 0 COMPASS (Complex proteins associated with Set1p) component shg1 Spore_III_AB PF09548.5 gi|345005569|ref|YP_004808422.1| - 0.027 14.2 9.1 3.2 7.4 0.4 3.5 1 1 2 3 3 3 0 Stage III sporulation protein AB (spore_III_AB) SecA_SW PF07516.8 gi|345005569|ref|YP_004808422.1| - 0.1 12.3 17.8 3e+02 0.9 12.2 2.2 1 1 0 1 1 1 0 SecA Wing and Scaffold domain IpaB_EvcA PF03278.8 gi|345005569|ref|YP_004808422.1| - 0.11 11.7 2.0 0.56 9.4 0.8 2.3 1 1 1 2 2 2 0 IpaB/EvcA family CBFD_NFYB_HMF PF00808.18 gi|345005569|ref|YP_004808422.1| - 0.71 9.9 21.8 13 5.9 1.4 4.8 1 1 3 4 4 4 0 Histone-like transcription factor (CBF/NF-Y) and archaeal histone DUF3819 PF12842.2 gi|345005569|ref|YP_004808422.1| - 0.72 9.5 14.6 11 5.7 2.1 3.7 1 1 1 2 2 2 0 Domain of unknown function (DUF3819) DUF1215 PF06744.7 gi|345005569|ref|YP_004808422.1| - 0.72 9.4 3.4 7.6 6.1 0.4 2.9 1 1 1 2 2 2 0 Protein of unknown function (DUF1215) Tcp11 PF05794.8 gi|345005569|ref|YP_004808422.1| - 2.3 6.8 13.7 13 4.3 9.4 1.9 1 1 0 1 1 1 0 T-complex protein 11 Crl PF07417.7 gi|345005569|ref|YP_004808422.1| - 4.4 7.0 12.2 5.7e+03 -3.1 8.5 3.5 1 1 0 1 1 1 0 Transcriptional regulator Crl DUF2681 PF10883.3 gi|345005569|ref|YP_004808422.1| - 5.5 7.2 8.1 0.42 10.8 1.0 2.5 1 1 0 2 2 2 0 Protein of unknown function (DUF2681) SAC3 PF12209.3 gi|345005569|ref|YP_004808422.1| - 6.3 7.0 19.6 1.5e+04 -11.0 13.6 5.1 1 1 0 1 1 0 0 Leucine permease transcriptional regulator helical domain Usp PF00582.21 gi|345005570|ref|YP_004808423.1| - 7.3e-27 94.2 0.6 8.3e-27 94.0 0.4 1.0 1 0 0 1 1 1 1 Universal stress protein family DUF2482 PF10655.4 gi|345005570|ref|YP_004808423.1| - 0.096 12.7 0.0 0.14 12.2 0.0 1.4 1 0 0 1 1 1 0 Hypothetical protein of unknown function (DUF2482) DFP PF04127.10 gi|345005571|ref|YP_004808424.1| - 1.9e-48 164.5 2.2 1e-47 162.1 0.3 2.1 2 0 0 2 2 2 1 DNA / pantothenate metabolism flavoprotein Flavoprotein PF02441.14 gi|345005571|ref|YP_004808424.1| - 5.5e-30 103.6 0.2 1.4e-29 102.3 0.1 1.7 1 0 0 1 1 1 1 Flavoprotein PhaG_MnhG_YufB PF03334.9 gi|345005572|ref|YP_004808425.1| - 5.3e-23 80.8 6.0 8.6e-23 80.1 4.1 1.3 1 0 0 1 1 1 1 Na+/H+ antiporter subunit DUF202 PF02656.10 gi|345005572|ref|YP_004808425.1| - 1.1 9.5 3.6 0.54 10.5 0.4 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF202) MrpF_PhaF PF04066.8 gi|345005573|ref|YP_004808426.1| - 3.6e-16 59.1 9.8 7e-16 58.2 6.8 1.5 1 0 0 1 1 1 1 Multiple resistance and pH regulation protein F (MrpF / PhaF) TAT_signal PF10518.4 gi|345005573|ref|YP_004808426.1| - 0.29 11.2 2.8 1.1 9.4 1.9 2.0 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence DUF2108 PF09881.4 gi|345005573|ref|YP_004808426.1| - 1.2 8.9 10.1 3.5 7.5 7.0 2.0 1 1 0 1 1 1 0 Predicted membrane protein (DUF2108) DUF3493 PF11998.3 gi|345005573|ref|YP_004808426.1| - 2.3 8.1 4.9 0.38 10.6 0.7 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF3493) Cation_efflux PF01545.16 gi|345005573|ref|YP_004808426.1| - 8.4 5.3 13.3 0.35 9.9 5.4 1.4 2 0 0 2 2 2 0 Cation efflux family MNHE PF01899.11 gi|345005574|ref|YP_004808427.1| - 6.9e-40 136.2 1.9 8.8e-40 135.8 1.3 1.0 1 0 0 1 1 1 1 Na+/H+ ion antiporter subunit Oxidored_q1 PF00361.15 gi|345005575|ref|YP_004808428.1| - 1e-48 165.9 13.7 2.3e-26 92.6 4.4 2.3 2 0 0 2 2 2 2 NADH-Ubiquinone/plastoquinone (complex I), various chains Oxidored_q1_N PF00662.15 gi|345005575|ref|YP_004808428.1| - 0.0023 17.4 0.2 0.0069 15.9 0.1 1.7 1 0 0 1 1 1 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus NADHdeh_related PF10125.4 gi|345005575|ref|YP_004808428.1| - 0.0034 16.5 5.9 0.0034 16.5 4.1 2.6 2 0 0 2 2 2 1 NADH dehydrogenase I, subunit N related protein Oxidored_q2 PF00420.19 gi|345005576|ref|YP_004808429.1| - 9.1e-24 82.8 2.1 1.1e-23 82.5 1.4 1.1 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L DUF1049 PF06305.6 gi|345005576|ref|YP_004808429.1| - 0.23 10.9 3.9 3.7 7.0 0.2 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF1049) SPW PF03779.9 gi|345005576|ref|YP_004808429.1| - 4.6 6.6 6.8 0.9 8.9 0.6 2.3 2 0 0 2 2 2 0 SPW repeat MnhB PF04039.8 gi|345005577|ref|YP_004808430.1| - 1.2e-25 89.9 15.2 2e-25 89.2 10.6 1.4 1 1 0 1 1 1 1 Domain related to MnhB subunit of Na+/H+ antiporter Oxidored_q1 PF00361.15 gi|345005578|ref|YP_004808431.1| - 2e-65 220.7 7.9 2e-65 220.7 5.5 2.2 2 0 0 2 2 2 1 NADH-Ubiquinone/plastoquinone (complex I), various chains DUF4040 PF13244.1 gi|345005578|ref|YP_004808431.1| - 3.2e-16 59.0 9.1 3.2e-16 59.0 6.3 4.2 5 0 0 5 5 5 1 Domain of unknown function (DUF4040) Oxidored_q1_N PF00662.15 gi|345005578|ref|YP_004808431.1| - 3.6e-09 36.0 0.3 1.9e-08 33.7 0.0 2.5 2 0 0 2 2 2 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus YIF1 PF03878.10 gi|345005578|ref|YP_004808431.1| - 0.04 13.0 0.3 0.04 13.0 0.2 2.1 2 0 0 2 2 2 0 YIF1 Pribosyltran PF00156.22 gi|345005579|ref|YP_004808432.1| - 4.9e-18 65.0 0.3 4.9e-18 65.0 0.2 1.8 1 1 1 2 2 2 1 Phosphoribosyl transferase domain UPRTase PF14681.1 gi|345005579|ref|YP_004808432.1| - 0.0015 17.7 0.0 0.0021 17.3 0.0 1.3 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.1 gi|345005579|ref|YP_004808432.1| - 0.032 13.5 0.2 0.043 13.1 0.1 1.2 1 0 0 1 1 1 0 Phosphoribosyl transferase HTH_29 PF13551.1 gi|345005580|ref|YP_004808433.1| - 4.8e-24 84.6 1.4 3.1e-23 82.0 0.2 2.2 2 0 0 2 2 2 1 Winged helix-turn helix DDE_3 PF13358.1 gi|345005580|ref|YP_004808433.1| - 7.6e-18 64.6 0.2 1.6e-17 63.6 0.0 1.6 2 0 0 2 2 2 1 DDE superfamily endonuclease HTH_23 PF13384.1 gi|345005580|ref|YP_004808433.1| - 2.5e-12 46.0 1.3 4e-11 42.1 0.2 2.9 3 0 0 3 3 3 1 Homeodomain-like domain HTH_32 PF13565.1 gi|345005580|ref|YP_004808433.1| - 6e-12 46.1 0.5 2.2e-11 44.4 0.3 2.0 1 0 0 1 1 1 1 Homeodomain-like domain HTH_28 PF13518.1 gi|345005580|ref|YP_004808433.1| - 4.6e-05 23.3 0.2 0.00029 20.7 0.0 2.2 2 0 0 2 2 2 1 Helix-turn-helix domain rve PF00665.21 gi|345005580|ref|YP_004808433.1| - 0.014 15.4 0.0 0.026 14.6 0.0 1.5 1 0 0 1 1 1 0 Integrase core domain HTH_Tnp_Tc3_2 PF01498.13 gi|345005580|ref|YP_004808433.1| - 0.082 12.9 0.3 0.21 11.6 0.0 1.8 2 0 0 2 2 2 0 Transposase UPF0236 PF06782.6 gi|345005581|ref|YP_004808434.1| - 2.7e-07 29.4 0.0 1e-05 24.2 0.0 2.1 2 0 0 2 2 2 2 Uncharacterised protein family (UPF0236) Transposase_mut PF00872.13 gi|345005581|ref|YP_004808434.1| - 8.9e-05 21.2 0.9 0.041 12.4 0.1 2.5 2 1 0 2 2 2 2 Transposase, Mutator family LETM1 PF07766.8 gi|345005582|ref|YP_004808435.1| - 0.036 13.0 0.0 0.043 12.8 0.0 1.1 1 0 0 1 1 1 0 LETM1-like protein AstE_AspA PF04952.9 gi|345005583|ref|YP_004808436.1| - 1.2e-59 201.5 0.0 1.6e-59 201.2 0.0 1.0 1 0 0 1 1 1 1 Succinylglutamate desuccinylase / Aspartoacylase family Peptidase_M14 PF00246.19 gi|345005583|ref|YP_004808436.1| - 0.0064 16.1 0.2 0.017 14.7 0.1 1.8 1 1 0 1 1 1 1 Zinc carboxypeptidase Peptidase_S9 PF00326.16 gi|345005584|ref|YP_004808437.1| - 5.9e-47 159.6 0.3 2.8e-46 157.4 0.1 2.0 2 0 0 2 2 2 1 Prolyl oligopeptidase family PD40 PF07676.7 gi|345005584|ref|YP_004808437.1| - 1.7e-10 40.3 1.5 0.068 12.8 0.0 4.6 4 0 0 4 4 4 3 WD40-like Beta Propeller Repeat Abhydrolase_5 PF12695.2 gi|345005584|ref|YP_004808437.1| - 4.8e-10 39.3 0.1 2.2e-08 33.9 0.0 2.6 2 0 0 2 2 2 1 Alpha/beta hydrolase family Peptidase_S15 PF02129.13 gi|345005584|ref|YP_004808437.1| - 1.1e-08 34.8 0.3 0.0001 21.8 0.2 3.0 2 1 1 3 3 3 2 X-Pro dipeptidyl-peptidase (S15 family) Abhydrolase_6 PF12697.2 gi|345005584|ref|YP_004808437.1| - 4e-07 30.1 2.9 4e-07 30.1 2.0 3.2 3 1 0 3 3 3 1 Alpha/beta hydrolase family Esterase_phd PF10503.4 gi|345005584|ref|YP_004808437.1| - 9.4e-07 28.2 0.0 1.7e-06 27.4 0.0 1.4 1 0 0 1 1 1 1 Esterase PHB depolymerase DPPIV_N PF00930.16 gi|345005584|ref|YP_004808437.1| - 0.019 13.5 0.0 3 6.3 0.0 2.5 2 1 0 2 2 2 0 Dipeptidyl peptidase IV (DPP IV) N-terminal region DLH PF01738.13 gi|345005584|ref|YP_004808437.1| - 0.028 13.7 0.5 0.056 12.7 0.3 1.5 1 1 0 1 1 1 0 Dienelactone hydrolase family DUF4349 PF14257.1 gi|345005585|ref|YP_004808438.1| - 6.5e-66 222.2 5.6 8.8e-66 221.8 3.9 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4349) IncA PF04156.9 gi|345005585|ref|YP_004808438.1| - 0.00057 19.5 1.4 0.00057 19.5 1.0 1.7 2 0 0 2 2 1 1 IncA protein Med9 PF07544.8 gi|345005585|ref|YP_004808438.1| - 0.0012 18.5 2.4 0.29 10.9 0.1 2.5 2 0 0 2 2 2 1 RNA polymerase II transcription mediator complex subunit 9 Spc7 PF08317.6 gi|345005585|ref|YP_004808438.1| - 0.0025 16.5 2.6 0.0034 16.0 1.8 1.1 1 0 0 1 1 1 1 Spc7 kinetochore protein TPR_MLP1_2 PF07926.7 gi|345005585|ref|YP_004808438.1| - 0.0054 16.4 0.0 0.0079 15.9 0.0 1.3 1 0 0 1 1 1 1 TPR/MLP1/MLP2-like protein AAA_13 PF13166.1 gi|345005585|ref|YP_004808438.1| - 0.0079 14.7 0.7 0.0095 14.4 0.5 1.1 1 0 0 1 1 1 1 AAA domain Lebercilin PF15619.1 gi|345005585|ref|YP_004808438.1| - 0.0099 15.3 4.2 0.016 14.6 2.9 1.2 1 0 0 1 1 1 1 Ciliary protein causing Leber congenital amaurosis disease AAA_27 PF13514.1 gi|345005585|ref|YP_004808438.1| - 0.012 13.3 4.7 0.021 12.5 3.3 1.3 1 0 0 1 1 1 0 AAA domain Seryl_tRNA_N PF02403.17 gi|345005585|ref|YP_004808438.1| - 0.015 15.3 2.5 0.015 15.3 1.7 1.6 2 0 0 2 2 1 0 Seryl-tRNA synthetase N-terminal domain DUF1664 PF07889.7 gi|345005585|ref|YP_004808438.1| - 0.017 14.9 0.9 0.032 14.0 0.6 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1664) APG6 PF04111.7 gi|345005585|ref|YP_004808438.1| - 0.021 13.8 3.1 0.032 13.2 2.1 1.2 1 0 0 1 1 1 0 Autophagy protein Apg6 PilJ PF13675.1 gi|345005585|ref|YP_004808438.1| - 0.023 15.0 3.9 0.16 12.2 0.9 2.3 2 0 0 2 2 2 0 Type IV pili methyl-accepting chemotaxis transducer N-term Sec8_exocyst PF04048.9 gi|345005585|ref|YP_004808438.1| - 0.027 14.1 0.5 0.16 11.6 0.1 1.9 1 1 1 2 2 2 0 Sec8 exocyst complex component specific domain DUF2730 PF10805.3 gi|345005585|ref|YP_004808438.1| - 0.027 14.1 2.5 0.077 12.7 1.7 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF2730) Laminin_II PF06009.7 gi|345005585|ref|YP_004808438.1| - 0.031 14.0 5.1 1.8 8.3 0.7 2.2 1 1 1 2 2 2 0 Laminin Domain II OEP PF02321.13 gi|345005585|ref|YP_004808438.1| - 0.031 13.8 8.1 0.061 12.9 5.6 1.4 1 0 0 1 1 1 0 Outer membrane efflux protein DUF1358 PF07096.6 gi|345005585|ref|YP_004808438.1| - 0.032 13.9 0.0 0.078 12.6 0.0 1.6 2 0 0 2 2 1 0 Protein of unknown function (DUF1358) EzrA PF06160.7 gi|345005585|ref|YP_004808438.1| - 0.034 12.3 3.0 0.047 11.8 2.1 1.1 1 0 0 1 1 1 0 Septation ring formation regulator, EzrA MscS_porin PF12795.2 gi|345005585|ref|YP_004808438.1| - 0.036 13.3 6.6 0.052 12.8 3.8 1.6 2 0 0 2 2 2 0 Mechanosensitive ion channel porin domain Fmp27_WPPW PF10359.4 gi|345005585|ref|YP_004808438.1| - 0.046 12.1 0.6 0.063 11.6 0.4 1.2 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain FlxA PF14282.1 gi|345005585|ref|YP_004808438.1| - 0.06 13.3 0.1 0.11 12.4 0.1 1.4 1 0 0 1 1 1 0 FlxA-like protein Snapin_Pallidin PF14712.1 gi|345005585|ref|YP_004808438.1| - 0.083 13.2 2.6 0.16 12.2 1.8 1.4 1 0 0 1 1 1 0 Snapin/Pallidin YPEB PF14620.1 gi|345005585|ref|YP_004808438.1| - 0.087 11.8 2.1 1.5 7.7 0.3 2.1 2 0 0 2 2 2 0 YpeB sporulation DivIC PF04977.10 gi|345005585|ref|YP_004808438.1| - 0.1 12.1 8.1 0.6 9.6 0.6 2.5 1 1 1 2 2 2 0 Septum formation initiator Syntaxin PF00804.20 gi|345005585|ref|YP_004808438.1| - 0.1 12.7 3.0 0.071 13.2 0.8 1.6 2 0 0 2 2 1 0 Syntaxin COG2 PF06148.6 gi|345005585|ref|YP_004808438.1| - 0.11 12.4 1.4 0.2 11.5 1.0 1.5 1 0 0 1 1 1 0 COG (conserved oligomeric Golgi) complex component, COG2 DUF4200 PF13863.1 gi|345005585|ref|YP_004808438.1| - 0.11 12.4 6.6 0.55 10.1 0.1 2.6 2 1 1 3 3 3 0 Domain of unknown function (DUF4200) Reo_sigmaC PF04582.7 gi|345005585|ref|YP_004808438.1| - 0.11 11.5 0.3 0.2 10.7 0.2 1.3 1 0 0 1 1 1 0 Reovirus sigma C capsid protein Zw10 PF06248.8 gi|345005585|ref|YP_004808438.1| - 0.13 10.4 0.6 0.17 10.0 0.4 1.0 1 0 0 1 1 1 0 Centromere/kinetochore Zw10 DUF3847 PF12958.2 gi|345005585|ref|YP_004808438.1| - 0.13 12.0 3.0 0.34 10.6 0.2 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF3847) V_ATPase_I PF01496.14 gi|345005585|ref|YP_004808438.1| - 0.13 10.0 3.6 0.23 9.2 2.5 1.4 1 1 0 1 1 1 0 V-type ATPase 116kDa subunit family Baculo_PEP_C PF04513.7 gi|345005585|ref|YP_004808438.1| - 0.14 11.9 2.7 0.25 11.1 1.8 1.4 1 0 0 1 1 1 0 Baculovirus polyhedron envelope protein, PEP, C terminus DUF2802 PF10975.3 gi|345005585|ref|YP_004808438.1| - 0.14 11.8 2.3 8.1 6.2 0.1 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF2802) Prefoldin PF02996.12 gi|345005585|ref|YP_004808438.1| - 0.2 11.3 5.4 0.86 9.2 0.3 2.6 2 1 1 3 3 2 0 Prefoldin subunit HR1 PF02185.11 gi|345005585|ref|YP_004808438.1| - 0.22 11.3 3.0 6.7 6.5 0.5 2.3 1 1 1 2 2 2 0 Hr1 repeat Lge1 PF11488.3 gi|345005585|ref|YP_004808438.1| - 0.4 10.8 4.7 31 4.8 3.3 2.6 1 1 0 1 1 1 0 Transcriptional regulatory protein LGE1 Cep57_CLD_2 PF14197.1 gi|345005585|ref|YP_004808438.1| - 0.54 10.2 8.1 3 7.8 5.7 2.1 1 1 0 1 1 1 0 Centrosome localisation domain of PPC89 NPV_P10 PF05531.7 gi|345005585|ref|YP_004808438.1| - 0.67 10.2 4.3 3.9 7.8 0.4 2.3 1 1 1 2 2 2 0 Nucleopolyhedrovirus P10 protein Occludin_ELL PF07303.8 gi|345005585|ref|YP_004808438.1| - 0.67 10.7 3.3 12 6.7 0.1 2.5 2 1 1 3 3 2 0 Occludin homology domain Rootletin PF15035.1 gi|345005585|ref|YP_004808438.1| - 0.76 9.7 7.9 1.2 9.1 5.5 1.3 1 1 0 1 1 1 0 Ciliary rootlet component, centrosome cohesion Uds1 PF15456.1 gi|345005585|ref|YP_004808438.1| - 1 9.3 7.2 2.7 7.9 3.6 2.1 1 1 1 2 2 2 0 Up-regulated During Septation SlyX PF04102.7 gi|345005585|ref|YP_004808438.1| - 1.1 9.7 6.3 11 6.4 2.4 2.5 1 1 1 2 2 2 0 SlyX TMF_DNA_bd PF12329.3 gi|345005585|ref|YP_004808438.1| - 1.3 8.8 4.9 5.9 6.7 3.3 2.1 2 1 0 2 2 1 0 TATA element modulatory factor 1 DNA binding ADIP PF11559.3 gi|345005585|ref|YP_004808438.1| - 1.4 8.7 6.4 4.5 7.1 4.4 1.7 1 1 0 1 1 1 0 Afadin- and alpha -actinin-Binding DUF4140 PF13600.1 gi|345005585|ref|YP_004808438.1| - 2.1 8.8 12.0 1.2 9.5 1.2 2.7 2 1 1 3 3 2 0 N-terminal domain of unknown function (DUF4140) Atg14 PF10186.4 gi|345005585|ref|YP_004808438.1| - 2.5 6.9 4.4 4 6.2 2.9 1.3 1 1 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 EMP24_GP25L PF01105.19 gi|345005585|ref|YP_004808438.1| - 3.1 7.4 5.6 2.5 7.7 0.8 2.2 1 1 1 2 2 2 0 emp24/gp25L/p24 family/GOLD DUF2071 PF09844.4 gi|345005586|ref|YP_004808439.1| - 2.7e-59 200.2 0.0 4.6e-49 166.7 0.0 2.0 2 0 0 2 2 2 2 Uncharacterized conserved protein (COG2071) ADC PF06314.6 gi|345005586|ref|YP_004808439.1| - 0.012 14.9 0.0 0.015 14.6 0.0 1.2 1 0 0 1 1 1 0 Acetoacetate decarboxylase (ADC) Aminotran_5 PF00266.14 gi|345005587|ref|YP_004808440.1| - 1.5e-57 195.0 0.0 1.9e-57 194.7 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-V Aminotran_1_2 PF00155.16 gi|345005587|ref|YP_004808440.1| - 3e-07 29.7 0.0 0.00097 18.1 0.0 2.1 2 0 0 2 2 2 2 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.12 gi|345005587|ref|YP_004808440.1| - 0.00023 20.3 0.4 0.00035 19.7 0.3 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Acyl-CoA_dh_N PF02771.11 gi|345005587|ref|YP_004808440.1| - 0.093 13.3 0.4 0.27 11.8 0.2 1.9 1 1 0 1 1 1 0 Acyl-CoA dehydrogenase, N-terminal domain DDE_Tnp_IS66 PF03050.9 gi|345005590|ref|YP_004808443.1| - 2.1e-52 178.0 0.1 2.1e-52 178.0 0.1 2.3 2 1 1 3 3 3 1 Transposase IS66 family DUF904 PF06005.7 gi|345005590|ref|YP_004808443.1| - 2.7e-10 40.3 5.7 9e-10 38.7 3.9 1.9 1 0 0 1 1 1 1 Protein of unknown function (DUF904) DUF972 PF06156.8 gi|345005590|ref|YP_004808443.1| - 0.00018 21.8 4.6 0.00052 20.3 3.2 1.7 1 0 0 1 1 1 1 Protein of unknown function (DUF972) CASP_C PF08172.7 gi|345005590|ref|YP_004808443.1| - 0.00025 20.1 2.2 0.00042 19.4 1.5 1.2 1 0 0 1 1 1 1 CASP C terminal bZIP_1 PF00170.16 gi|345005590|ref|YP_004808443.1| - 0.0021 17.9 7.9 0.0043 16.9 5.5 1.5 1 0 0 1 1 1 1 bZIP transcription factor SPX PF03105.14 gi|345005590|ref|YP_004808443.1| - 0.0024 17.7 0.2 0.0035 17.1 0.1 1.2 1 0 0 1 1 1 1 SPX domain Striatin PF08232.7 gi|345005590|ref|YP_004808443.1| - 0.0024 18.1 4.3 0.0051 17.1 3.0 1.5 1 0 0 1 1 1 1 Striatin family Tektin PF03148.9 gi|345005590|ref|YP_004808443.1| - 0.0041 15.7 2.6 0.0067 15.0 1.8 1.2 1 0 0 1 1 1 1 Tektin family HOOK PF05622.7 gi|345005590|ref|YP_004808443.1| - 0.011 13.5 2.2 0.016 13.0 1.6 1.1 1 0 0 1 1 1 0 HOOK protein zf-IS66 PF13005.2 gi|345005590|ref|YP_004808443.1| - 0.017 15.1 8.8 0.047 13.6 6.1 1.8 1 1 0 1 1 1 0 zinc-finger binding domain of transposase IS66 DDE_Tnp_IS240 PF13610.1 gi|345005590|ref|YP_004808443.1| - 0.022 14.7 0.9 0.049 13.5 0.0 2.1 2 1 0 2 2 1 0 DDE domain HALZ PF02183.13 gi|345005590|ref|YP_004808443.1| - 0.033 13.8 5.2 0.094 12.4 3.6 1.8 1 0 0 1 1 1 0 Homeobox associated leucine zipper FlaC_arch PF05377.6 gi|345005590|ref|YP_004808443.1| - 0.035 13.9 2.8 0.079 12.8 2.0 1.6 1 0 0 1 1 1 0 Flagella accessory protein C (FlaC) ERM PF00769.14 gi|345005590|ref|YP_004808443.1| - 0.049 13.1 6.2 0.11 11.9 4.3 1.5 1 0 0 1 1 1 0 Ezrin/radixin/moesin family Fmp27_WPPW PF10359.4 gi|345005590|ref|YP_004808443.1| - 0.057 11.8 1.7 0.078 11.3 1.2 1.1 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain IncA PF04156.9 gi|345005590|ref|YP_004808443.1| - 0.059 12.9 6.1 0.12 11.9 4.2 1.5 1 0 0 1 1 1 0 IncA protein GAS PF13851.1 gi|345005590|ref|YP_004808443.1| - 0.071 12.3 5.1 0.13 11.4 3.5 1.3 1 0 0 1 1 1 0 Growth-arrest specific micro-tubule binding V_ATPase_I PF01496.14 gi|345005590|ref|YP_004808443.1| - 0.081 10.7 2.2 0.1 10.4 1.5 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family DUF1875 PF08961.5 gi|345005590|ref|YP_004808443.1| - 0.099 11.9 3.5 0.17 11.1 2.4 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1875) SpoVR PF04293.8 gi|345005590|ref|YP_004808443.1| - 0.12 10.7 4.7 0.18 10.1 3.2 1.2 1 0 0 1 1 1 0 SpoVR like protein NUDE_C PF04880.8 gi|345005590|ref|YP_004808443.1| - 0.16 12.3 3.2 0.3 11.4 2.2 1.4 1 0 0 1 1 1 0 NUDE protein, C-terminal conserved region TMF_DNA_bd PF12329.3 gi|345005590|ref|YP_004808443.1| - 0.19 11.5 8.9 0.46 10.3 6.2 1.6 1 0 0 1 1 1 0 TATA element modulatory factor 1 DNA binding Shugoshin_N PF07558.6 gi|345005590|ref|YP_004808443.1| - 0.33 10.7 5.9 0.15 11.8 1.9 2.0 1 1 0 1 1 1 0 Shugoshin N-terminal coiled-coil region Atg14 PF10186.4 gi|345005590|ref|YP_004808443.1| - 0.36 9.7 3.5 0.66 8.8 2.5 1.4 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 DivIC PF04977.10 gi|345005590|ref|YP_004808443.1| - 0.37 10.3 8.3 0.86 9.1 5.4 1.8 1 1 0 1 1 1 0 Septum formation initiator Daxx PF03344.10 gi|345005590|ref|YP_004808443.1| - 0.4 9.1 6.8 0.6 8.5 4.7 1.2 1 0 0 1 1 1 0 Daxx Family Sipho_Gp157 PF05565.6 gi|345005590|ref|YP_004808443.1| - 0.45 10.0 3.1 0.72 9.4 2.1 1.2 1 0 0 1 1 1 0 Siphovirus Gp157 Synaptobrevin PF00957.16 gi|345005590|ref|YP_004808443.1| - 0.46 10.1 2.2 0.84 9.2 1.5 1.3 1 0 0 1 1 1 0 Synaptobrevin ADIP PF11559.3 gi|345005590|ref|YP_004808443.1| - 0.56 10.0 7.1 1.2 9.0 4.9 1.5 1 0 0 1 1 1 0 Afadin- and alpha -actinin-Binding DUF2205 PF10224.4 gi|345005590|ref|YP_004808443.1| - 0.6 9.7 6.0 1.2 8.7 4.2 1.4 1 0 0 1 1 1 0 Predicted coiled-coil protein (DUF2205) TBPIP PF07106.8 gi|345005590|ref|YP_004808443.1| - 0.73 9.3 5.0 0.41 10.1 2.0 1.7 2 0 0 2 2 1 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) EMP24_GP25L PF01105.19 gi|345005590|ref|YP_004808443.1| - 0.84 9.3 6.0 6.1 6.5 2.9 2.1 2 0 0 2 2 2 0 emp24/gp25L/p24 family/GOLD Prefoldin_2 PF01920.15 gi|345005590|ref|YP_004808443.1| - 0.85 9.4 8.1 1.6 8.4 5.6 1.4 1 0 0 1 1 1 0 Prefoldin subunit bZIP_2 PF07716.10 gi|345005590|ref|YP_004808443.1| - 0.86 9.4 14.5 0.8 9.5 6.4 2.6 1 1 1 2 2 2 0 Basic region leucine zipper TSC22 PF01166.13 gi|345005590|ref|YP_004808443.1| - 1.3 9.0 13.4 28 4.7 8.0 3.2 2 1 0 2 2 2 0 TSC-22/dip/bun family APG6 PF04111.7 gi|345005590|ref|YP_004808443.1| - 2.2 7.2 7.1 3.5 6.5 4.9 1.2 1 0 0 1 1 1 0 Autophagy protein Apg6 NYD-SP28_assoc PF14775.1 gi|345005590|ref|YP_004808443.1| - 3.1 7.5 9.2 5.8 6.6 5.2 2.3 1 1 1 2 2 2 0 Sperm tail C-terminal domain DUF433 PF04255.9 gi|345005591|ref|YP_004808444.1| - 1.1e-06 27.8 0.2 1.8e-06 27.2 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF433) UPF0240 PF06784.6 gi|345005591|ref|YP_004808444.1| - 0.15 11.7 0.0 0.19 11.3 0.0 1.2 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0240) Lactamase_B_2 PF12706.2 gi|345005593|ref|YP_004808446.1| - 9e-11 41.6 0.1 3e-10 39.9 0.0 1.8 2 0 0 2 2 2 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|345005593|ref|YP_004808446.1| - 5.9e-09 35.8 1.8 1.9e-08 34.1 1.2 1.9 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Glyoxalase_2 PF12681.2 gi|345005595|ref|YP_004808448.1| - 0.07 13.7 0.1 0.1 13.2 0.1 1.3 1 0 0 1 1 1 0 Glyoxalase-like domain ABC2_membrane PF01061.19 gi|345005596|ref|YP_004808449.1| - 1.1e-24 86.7 9.9 1.1e-24 86.7 6.9 1.3 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.2 gi|345005596|ref|YP_004808449.1| - 4.4e-15 55.5 2.3 4.4e-15 55.5 1.6 2.0 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.2 gi|345005596|ref|YP_004808449.1| - 2.7e-08 33.0 5.3 2.7e-08 33.0 3.7 1.8 2 0 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|345005596|ref|YP_004808449.1| - 1.3e-06 27.7 8.6 2.5e-06 26.8 5.9 1.3 1 1 0 1 1 1 1 ABC-2 family transporter protein DUF2074 PF09847.4 gi|345005596|ref|YP_004808449.1| - 0.00077 18.3 0.6 0.0011 17.8 0.4 1.2 1 0 0 1 1 1 1 Predicted permease (DUF2074) ABC_tran PF00005.22 gi|345005597|ref|YP_004808450.1| - 3.8e-26 92.0 0.0 6.8e-26 91.1 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|345005597|ref|YP_004808450.1| - 3e-14 53.6 0.0 2.7e-08 34.1 0.0 2.1 1 1 1 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|345005597|ref|YP_004808450.1| - 4.5e-06 26.7 0.0 7.6e-06 26.0 0.0 1.3 1 0 0 1 1 1 1 AAA ATPase domain AAA_30 PF13604.1 gi|345005597|ref|YP_004808450.1| - 0.00022 20.8 0.5 0.002 17.7 0.0 2.2 2 1 0 2 2 2 1 AAA domain AAA_23 PF13476.1 gi|345005597|ref|YP_004808450.1| - 0.0026 18.1 0.1 0.0039 17.5 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|345005597|ref|YP_004808450.1| - 0.0079 15.2 0.0 0.91 8.4 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain AAA_29 PF13555.1 gi|345005597|ref|YP_004808450.1| - 0.01 15.3 0.3 0.02 14.4 0.2 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain UPF0079 PF02367.12 gi|345005597|ref|YP_004808450.1| - 0.013 15.1 0.2 0.023 14.3 0.1 1.3 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 AAA_19 PF13245.1 gi|345005597|ref|YP_004808450.1| - 0.037 13.7 2.8 0.32 10.7 0.1 2.6 2 1 0 2 2 2 0 Part of AAA domain AAA PF00004.24 gi|345005597|ref|YP_004808450.1| - 0.056 13.6 0.1 0.41 10.8 0.0 2.3 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.1 gi|345005597|ref|YP_004808450.1| - 0.066 13.3 0.1 0.2 11.7 0.0 2.0 1 1 0 1 1 1 0 AAA domain IstB_IS21 PF01695.12 gi|345005597|ref|YP_004808450.1| - 0.088 12.2 0.1 14 5.0 0.0 2.2 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_33 PF13671.1 gi|345005597|ref|YP_004808450.1| - 0.093 12.6 0.0 0.44 10.4 0.0 2.0 2 0 0 2 2 2 0 AAA domain cobW PF02492.14 gi|345005597|ref|YP_004808450.1| - 0.1 12.0 0.1 0.34 10.3 0.1 1.8 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain DUF258 PF03193.11 gi|345005597|ref|YP_004808450.1| - 0.12 11.5 0.0 0.22 10.7 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 CDC45 PF02724.9 gi|345005599|ref|YP_004808452.1| - 0.021 12.9 0.4 0.019 13.0 0.3 1.1 1 0 0 1 1 1 0 CDC45-like protein Trypan_PARP PF05887.6 gi|345005599|ref|YP_004808452.1| - 0.037 13.8 1.3 0.049 13.4 0.9 1.3 1 0 0 1 1 1 0 Procyclic acidic repetitive protein (PARP) DUF4637 PF15470.1 gi|345005599|ref|YP_004808452.1| - 0.066 12.8 3.1 0.083 12.5 2.2 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4637) DUF1469 PF07332.6 gi|345005599|ref|YP_004808452.1| - 0.12 12.1 3.1 0.17 11.6 2.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1469) DUF2201_N PF13203.1 gi|345005599|ref|YP_004808452.1| - 0.12 11.5 0.7 0.14 11.3 0.5 1.1 1 0 0 1 1 1 0 Putative metallopeptidase domain DUF3357 PF11837.3 gi|345005599|ref|YP_004808452.1| - 0.2 11.4 0.0 0.2 11.4 0.0 2.3 1 1 2 3 3 3 0 Domain of unknown function (DUF3357) CARDB PF07705.6 gi|345005600|ref|YP_004808453.1| - 0.053 13.5 0.4 14 5.7 0.1 2.4 2 0 0 2 2 2 0 CARDB SKG6 PF08693.5 gi|345005600|ref|YP_004808453.1| - 0.063 12.5 1.8 0.19 11.0 1.3 1.8 1 0 0 1 1 1 0 Transmembrane alpha-helix domain Abhydrolase_6 PF12697.2 gi|345005601|ref|YP_004808454.1| - 9.2e-23 81.3 11.0 1.3e-22 80.8 7.6 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_5 PF12695.2 gi|345005601|ref|YP_004808454.1| - 2.7e-19 69.3 1.7 1.4e-18 67.0 1.2 1.9 1 1 0 1 1 1 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.3 gi|345005601|ref|YP_004808454.1| - 5.7e-10 38.9 0.0 9.5e-10 38.1 0.0 1.3 1 0 0 1 1 1 1 Putative lysophospholipase Abhydrolase_1 PF00561.15 gi|345005601|ref|YP_004808454.1| - 2.2e-09 37.2 0.0 2.3e-08 33.8 0.0 2.0 1 1 0 1 1 1 1 alpha/beta hydrolase fold DLH PF01738.13 gi|345005601|ref|YP_004808454.1| - 3.7e-08 32.9 0.0 0.0001 21.6 0.0 2.8 2 1 0 2 2 2 2 Dienelactone hydrolase family Peptidase_S15 PF02129.13 gi|345005601|ref|YP_004808454.1| - 8.3e-08 31.9 0.0 9.4e-07 28.5 0.0 2.0 2 0 0 2 2 2 1 X-Pro dipeptidyl-peptidase (S15 family) AXE1 PF05448.7 gi|345005601|ref|YP_004808454.1| - 7e-05 21.4 0.1 0.066 11.7 0.2 3.0 2 1 0 2 2 2 1 Acetyl xylan esterase (AXE1) Peptidase_S9 PF00326.16 gi|345005601|ref|YP_004808454.1| - 0.00029 20.1 0.0 0.011 14.9 0.0 2.1 2 0 0 2 2 2 1 Prolyl oligopeptidase family FSH1 PF03959.8 gi|345005601|ref|YP_004808454.1| - 0.00085 18.8 0.0 0.0018 17.7 0.0 1.4 2 0 0 2 2 2 1 Serine hydrolase (FSH1) BAAT_C PF08840.6 gi|345005601|ref|YP_004808454.1| - 0.042 13.5 0.0 4.5 6.9 0.0 2.1 2 0 0 2 2 2 0 BAAT / Acyl-CoA thioester hydrolase C terminal HTH_20 PF12840.2 gi|345005603|ref|YP_004808456.1| - 1.7e-07 30.9 0.0 3.8e-07 29.8 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain DZR PF12773.2 gi|345005603|ref|YP_004808456.1| - 0.029 14.1 3.8 0.32 10.8 0.1 2.5 2 1 0 2 2 2 0 Double zinc ribbon zf-Mss51 PF13824.1 gi|345005603|ref|YP_004808456.1| - 0.79 9.6 8.2 0.25 11.2 1.2 2.6 2 1 0 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 Lar_restr_allev PF14354.1 gi|345005603|ref|YP_004808456.1| - 5.3 7.4 7.6 1.2 9.4 0.5 2.7 2 1 0 2 2 2 0 Restriction alleviation protein Lar AA_permease_2 PF13520.1 gi|345005604|ref|YP_004808457.1| - 3.1e-51 174.2 44.6 4e-51 173.9 30.9 1.1 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.16 gi|345005604|ref|YP_004808457.1| - 3.5e-40 137.7 46.1 4.8e-40 137.3 31.9 1.1 1 0 0 1 1 1 1 Amino acid permease Usp PF00582.21 gi|345005604|ref|YP_004808457.1| - 3e-21 76.1 8.0 2e-11 44.2 0.2 3.0 2 1 0 2 2 2 2 Universal stress protein family AA_permease_C PF13906.1 gi|345005604|ref|YP_004808457.1| - 0.3 10.9 12.6 0.15 11.9 4.3 3.1 2 0 0 2 2 2 0 C-terminus of AA_permease Usp PF00582.21 gi|345005605|ref|YP_004808458.1| - 1e-06 28.9 0.8 1.4e-06 28.5 0.5 1.1 1 0 0 1 1 1 1 Universal stress protein family UPF0058 PF01893.11 gi|345005607|ref|YP_004808460.1| - 1.4e-16 60.3 0.0 1.5e-16 60.1 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein family UPF0058 UvrD-helicase PF00580.16 gi|345005608|ref|YP_004808461.1| - 6.7e-48 163.5 0.2 6.4e-47 160.3 0.1 2.2 1 1 0 1 1 1 1 UvrD/REP helicase N-terminal domain UvrD_C PF13361.1 gi|345005608|ref|YP_004808461.1| - 2e-31 109.7 0.0 1.6e-16 60.7 0.0 2.3 2 0 0 2 2 2 2 UvrD-like helicase C-terminal domain AAA_19 PF13245.1 gi|345005608|ref|YP_004808461.1| - 6e-14 51.5 0.3 8.6e-12 44.6 0.0 3.1 3 0 0 3 3 3 1 Part of AAA domain PDDEXK_1 PF12705.2 gi|345005608|ref|YP_004808461.1| - 7.2e-10 38.6 1.1 1.6e-09 37.5 0.1 2.1 2 0 0 2 2 2 1 PD-(D/E)XK nuclease superfamily UvrD_C_2 PF13538.1 gi|345005608|ref|YP_004808461.1| - 8.1e-08 32.3 0.1 0.0094 16.0 0.0 2.8 2 0 0 2 2 2 2 UvrD-like helicase C-terminal domain AAA_30 PF13604.1 gi|345005608|ref|YP_004808461.1| - 0.00013 21.5 0.0 0.00028 20.5 0.0 1.5 1 0 0 1 1 1 1 AAA domain Viral_helicase1 PF01443.13 gi|345005608|ref|YP_004808461.1| - 0.0037 16.8 0.3 16 4.8 0.1 3.6 3 0 0 3 3 3 1 Viral (Superfamily 1) RNA helicase PhoH PF02562.11 gi|345005608|ref|YP_004808461.1| - 0.0079 15.4 0.1 0.87 8.7 0.0 2.3 2 0 0 2 2 2 1 PhoH-like protein AAA_12 PF13087.1 gi|345005608|ref|YP_004808461.1| - 0.0092 15.3 0.0 0.071 12.4 0.0 2.2 2 0 0 2 2 2 1 AAA domain PDDEXK_1 PF12705.2 gi|345005609|ref|YP_004808462.1| - 1.6e-17 63.7 0.2 4.5e-17 62.2 0.1 1.8 2 0 0 2 2 2 1 PD-(D/E)XK nuclease superfamily AsnC_trans_reg PF01037.16 gi|345005609|ref|YP_004808462.1| - 0.069 12.8 0.2 2.4 7.9 0.0 3.4 3 0 0 3 3 3 0 AsnC family Hydrolase PF00702.21 gi|345005610|ref|YP_004808463.1| - 2.9e-31 109.5 1.6 3.9e-31 109.1 1.1 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|345005610|ref|YP_004808463.1| - 2e-12 47.6 0.0 3.1e-12 47.0 0.0 1.3 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|345005610|ref|YP_004808463.1| - 2.5e-07 30.5 0.4 0.00081 19.0 0.1 2.1 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase Sigma70_r1_1 PF03979.9 gi|345005610|ref|YP_004808463.1| - 0.018 14.9 0.5 0.038 13.9 0.3 1.5 1 0 0 1 1 1 0 Sigma-70 factor, region 1.1 HTH_10 PF04967.7 gi|345005613|ref|YP_004808466.1| - 1.9e-17 62.5 0.1 3.4e-17 61.7 0.1 1.4 1 0 0 1 1 1 1 HTH DNA binding domain Sigma70_r4 PF04545.11 gi|345005613|ref|YP_004808466.1| - 9.5e-06 24.8 1.9 2.9e-05 23.2 0.6 2.2 2 0 0 2 2 2 1 Sigma-70, region 4 Sigma70_r4_2 PF08281.7 gi|345005613|ref|YP_004808466.1| - 0.0019 17.6 0.5 0.29 10.6 0.1 2.5 2 0 0 2 2 2 2 Sigma-70, region 4 HTH_1 PF00126.22 gi|345005613|ref|YP_004808466.1| - 0.0024 17.5 0.1 0.0052 16.4 0.1 1.5 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family HTH_20 PF12840.2 gi|345005613|ref|YP_004808466.1| - 0.054 13.3 0.2 0.15 11.9 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain MarR_2 PF12802.2 gi|345005613|ref|YP_004808466.1| - 0.078 12.6 0.0 0.19 11.4 0.0 1.7 1 0 0 1 1 1 0 MarR family HTH_3 PF01381.17 gi|345005613|ref|YP_004808466.1| - 0.11 12.3 0.3 0.36 10.7 0.1 2.0 1 1 1 2 2 2 0 Helix-turn-helix HTH_10 PF04967.7 gi|345005614|ref|YP_004808467.1| - 1.7e-16 59.4 0.0 3e-16 58.7 0.0 1.4 1 0 0 1 1 1 1 HTH DNA binding domain HTH_24 PF13412.1 gi|345005614|ref|YP_004808467.1| - 0.00019 20.7 0.0 0.00035 19.9 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|345005614|ref|YP_004808467.1| - 0.00049 19.7 0.0 0.0011 18.6 0.0 1.5 1 0 0 1 1 1 1 MarR family Sigma70_r4_2 PF08281.7 gi|345005614|ref|YP_004808467.1| - 0.00067 19.0 0.3 0.0019 17.6 0.1 1.8 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_AsnC-type PF13404.1 gi|345005614|ref|YP_004808467.1| - 0.0012 18.3 0.2 0.0027 17.2 0.2 1.6 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain Sigma70_r4 PF04545.11 gi|345005614|ref|YP_004808467.1| - 0.0032 16.7 0.0 0.0066 15.7 0.0 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_23 PF13384.1 gi|345005614|ref|YP_004808467.1| - 0.046 13.3 0.1 0.092 12.4 0.1 1.5 1 0 0 1 1 1 0 Homeodomain-like domain OrfB_IS605 PF01385.14 gi|345005617|ref|YP_004808470.1| - 6.9e-63 212.0 0.5 8.7e-63 211.7 0.4 1.1 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|345005617|ref|YP_004808470.1| - 3.7e-19 68.1 1.0 7.8e-19 67.1 0.7 1.6 1 0 0 1 1 1 1 Putative transposase DNA-binding domain C1_3 PF07649.7 gi|345005617|ref|YP_004808470.1| - 0.063 13.3 2.9 0.17 11.9 2.0 1.8 1 0 0 1 1 1 0 C1-like domain A2L_zn_ribbon PF08792.5 gi|345005617|ref|YP_004808470.1| - 0.12 11.8 3.7 0.33 10.4 2.6 1.8 1 0 0 1 1 1 0 A2L zinc ribbon domain Ribosomal_L37ae PF01780.14 gi|345005617|ref|YP_004808470.1| - 0.21 11.5 2.1 0.23 11.3 0.3 1.9 2 0 0 2 2 2 0 Ribosomal L37ae protein family DUF4199 PF13858.1 gi|345005618|ref|YP_004808471.1| - 0.25 11.2 5.9 0.071 13.0 1.9 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF4199) YtpI PF14007.1 gi|345005618|ref|YP_004808471.1| - 0.48 10.3 11.9 0.18 11.7 0.6 2.1 1 1 1 2 2 2 0 YtpI-like protein DUF3353 PF11833.3 gi|345005618|ref|YP_004808471.1| - 8.1 5.8 6.4 9.7 5.5 4.4 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3353) HTH_20 PF12840.2 gi|345005619|ref|YP_004808472.1| - 4e-10 39.3 0.4 5.7e-10 38.8 0.3 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.5 gi|345005619|ref|YP_004808472.1| - 1.3e-05 24.6 1.0 2.2e-05 23.9 0.1 1.7 2 0 0 2 2 2 1 IclR helix-turn-helix domain MarR_2 PF12802.2 gi|345005619|ref|YP_004808472.1| - 2.3e-05 23.9 0.1 3.4e-05 23.4 0.1 1.3 1 0 0 1 1 1 1 MarR family TrmB PF01978.14 gi|345005619|ref|YP_004808472.1| - 6.4e-05 22.5 0.0 0.00018 21.1 0.0 1.8 2 1 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB DUF1492 PF07374.6 gi|345005619|ref|YP_004808472.1| - 0.0032 17.5 0.0 0.0052 16.8 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1492) HTH_11 PF08279.7 gi|345005619|ref|YP_004808472.1| - 0.011 15.3 0.1 0.017 14.7 0.0 1.2 1 0 0 1 1 1 0 HTH domain FUR PF01475.14 gi|345005619|ref|YP_004808472.1| - 0.037 13.9 0.0 0.051 13.4 0.0 1.3 1 0 0 1 1 1 0 Ferric uptake regulator family Rrf2 PF02082.15 gi|345005619|ref|YP_004808472.1| - 0.038 14.1 0.0 0.066 13.3 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator HTH_7 PF02796.10 gi|345005619|ref|YP_004808472.1| - 0.058 13.2 0.0 0.12 12.3 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase ArsR PF09824.4 gi|345005619|ref|YP_004808472.1| - 0.061 12.6 0.0 0.073 12.3 0.0 1.1 1 0 0 1 1 1 0 ArsR transcriptional regulator HTH_5 PF01022.15 gi|345005619|ref|YP_004808472.1| - 0.085 12.5 0.0 0.12 12.0 0.0 1.2 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family PadR PF03551.9 gi|345005619|ref|YP_004808472.1| - 0.14 11.9 0.0 0.22 11.3 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family HTH_AsnC-type PF13404.1 gi|345005620|ref|YP_004808473.1| - 0.13 11.8 0.7 0.17 11.4 0.0 1.7 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain HIRA_B PF09453.5 gi|345005620|ref|YP_004808473.1| - 0.13 11.8 1.3 0.21 11.1 0.9 1.4 1 0 0 1 1 1 0 HIRA B motif TFIIB PF00382.14 gi|345005621|ref|YP_004808474.1| - 9.8e-35 118.2 0.3 5.4e-17 61.3 0.0 2.2 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.7 gi|345005621|ref|YP_004808474.1| - 7e-15 54.0 4.3 1.3e-14 53.2 3.0 1.4 1 0 0 1 1 1 1 TFIIB zinc-binding Cyclin_C PF02984.14 gi|345005621|ref|YP_004808474.1| - 0.022 14.6 0.2 0.24 11.3 0.0 2.3 3 0 0 3 3 3 0 Cyclin, C-terminal domain OrfB_Zn_ribbon PF07282.6 gi|345005621|ref|YP_004808474.1| - 0.087 12.4 0.6 0.18 11.4 0.4 1.4 1 0 0 1 1 1 0 Putative transposase DNA-binding domain Zn-ribbon_8 PF09723.5 gi|345005621|ref|YP_004808474.1| - 5.5 7.0 7.8 2.9 7.9 0.7 2.4 1 1 1 2 2 2 0 Zinc ribbon domain Copper-bind PF00127.15 gi|345005622|ref|YP_004808475.1| - 4.2e-12 46.1 0.0 6.2e-12 45.6 0.0 1.3 1 0 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family TAT_signal PF10518.4 gi|345005622|ref|YP_004808475.1| - 0.0001 21.9 1.7 0.0001 21.9 1.2 1.8 2 0 0 2 2 2 1 TAT (twin-arginine translocation) pathway signal sequence PKD PF00801.15 gi|345005622|ref|YP_004808475.1| - 0.073 12.8 0.6 0.23 11.2 0.4 1.8 1 1 0 1 1 1 0 PKD domain Myco_19_kDa PF05481.7 gi|345005622|ref|YP_004808475.1| - 1.3 8.8 6.4 7.4 6.3 1.7 2.2 1 1 1 2 2 2 0 Mycobacterium 19 kDa lipoprotein antigen Cu-oxidase_2 PF07731.9 gi|345005623|ref|YP_004808476.1| - 1.6e-21 76.2 2.7 1.6e-21 76.2 1.9 2.1 2 0 0 2 2 2 1 Multicopper oxidase Cu-oxidase_3 PF07732.10 gi|345005623|ref|YP_004808476.1| - 4.7e-14 52.1 2.6 1.7e-06 27.7 0.0 3.3 2 1 1 3 3 3 2 Multicopper oxidase TAT_signal PF10518.4 gi|345005623|ref|YP_004808476.1| - 0.051 13.6 0.6 0.1 12.6 0.4 1.5 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Multi_Drug_Res PF00893.14 gi|345005625|ref|YP_004808478.1| - 7.1e-29 100.1 5.7 9.6e-29 99.7 3.9 1.2 1 0 0 1 1 1 1 Small Multidrug Resistance protein EamA PF00892.15 gi|345005625|ref|YP_004808478.1| - 0.084 12.9 11.5 0.15 12.0 8.0 1.5 1 1 0 1 1 1 0 EamA-like transporter family Bax1-I PF01027.15 gi|345005625|ref|YP_004808478.1| - 0.35 10.4 9.5 0.51 9.9 6.6 1.3 1 1 0 1 1 1 0 Inhibitor of apoptosis-promoting Bax1 EmrE PF13536.1 gi|345005625|ref|YP_004808478.1| - 0.88 9.7 10.5 6.1 7.0 7.3 1.9 1 1 0 1 1 1 0 Multidrug resistance efflux transporter ELFV_dehydrog PF00208.16 gi|345005626|ref|YP_004808479.1| - 2.4e-70 236.9 0.2 3.1e-70 236.5 0.2 1.2 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ELFV_dehydrog_N PF02812.13 gi|345005626|ref|YP_004808479.1| - 9.9e-53 177.2 0.0 1.6e-52 176.5 0.0 1.3 1 0 0 1 1 1 1 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 2-Hacid_dh_C PF02826.14 gi|345005626|ref|YP_004808479.1| - 0.00065 18.8 0.0 0.0013 17.9 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AlaDh_PNT_C PF01262.16 gi|345005626|ref|YP_004808479.1| - 0.042 13.4 0.3 0.1 12.1 0.0 1.7 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain IlvN PF07991.7 gi|345005626|ref|YP_004808479.1| - 0.13 11.6 0.0 0.24 10.7 0.0 1.5 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, catalytic domain zf-C2HC5 PF06221.8 gi|345005627|ref|YP_004808480.1| - 0.00061 19.4 0.3 0.0007 19.2 0.2 1.1 1 0 0 1 1 1 1 Putative zinc finger motif, C2HC5-type Zn-ribbon_8 PF09723.5 gi|345005627|ref|YP_004808480.1| - 0.02 14.8 5.4 0.4 10.6 2.8 2.1 1 1 1 2 2 2 0 Zinc ribbon domain DUF1272 PF06906.6 gi|345005627|ref|YP_004808480.1| - 0.039 13.7 0.9 0.047 13.5 0.6 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1272) DZR PF12773.2 gi|345005627|ref|YP_004808480.1| - 0.045 13.5 0.8 0.05 13.4 0.5 1.2 1 0 0 1 1 1 0 Double zinc ribbon Ogr_Delta PF04606.7 gi|345005627|ref|YP_004808480.1| - 0.1 12.2 2.0 0.69 9.6 0.4 2.1 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger zf-C4_Topoisom PF01396.14 gi|345005627|ref|YP_004808480.1| - 0.12 11.9 2.3 0.28 10.7 0.4 2.0 1 1 1 2 2 2 0 Topoisomerase DNA binding C4 zinc finger HypA PF01155.14 gi|345005627|ref|YP_004808480.1| - 0.2 11.3 0.6 0.21 11.2 0.4 1.1 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family zf-IS66 PF13005.2 gi|345005627|ref|YP_004808480.1| - 0.34 10.8 0.3 0.34 10.8 0.2 1.8 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 Desulfoferrod_N PF06397.7 gi|345005627|ref|YP_004808480.1| - 0.83 9.0 2.7 1.2 8.5 1.9 1.5 1 1 0 1 1 1 0 Desulfoferrodoxin, N-terminal domain zf-CSL PF05207.8 gi|345005627|ref|YP_004808480.1| - 2.9 7.4 6.3 62 3.2 4.3 2.0 1 1 0 1 1 1 0 CSL zinc finger GAF_2 PF13185.1 gi|345005628|ref|YP_004808481.1| - 6.8e-23 81.8 4.3 8.6e-13 49.0 0.1 2.9 2 0 0 2 2 2 2 GAF domain GAF_3 PF13492.1 gi|345005628|ref|YP_004808481.1| - 2.3e-17 63.3 0.4 4.1e-10 39.8 0.0 2.8 2 0 0 2 2 2 2 GAF domain HTH_10 PF04967.7 gi|345005628|ref|YP_004808481.1| - 8.3e-16 57.3 0.0 2.3e-15 55.8 0.0 1.9 1 0 0 1 1 1 1 HTH DNA binding domain PAS_9 PF13426.1 gi|345005628|ref|YP_004808481.1| - 6e-14 52.2 0.2 1.3e-07 31.9 0.0 3.0 2 0 0 2 2 2 2 PAS domain PAS_4 PF08448.5 gi|345005628|ref|YP_004808481.1| - 5.7e-13 48.8 4.0 9.3e-11 41.7 0.1 4.2 3 1 0 3 3 3 1 PAS fold Response_reg PF00072.19 gi|345005628|ref|YP_004808481.1| - 2.9e-12 46.5 0.1 3.4e-11 43.1 0.0 2.7 3 0 0 3 3 3 1 Response regulator receiver domain PAS_8 PF13188.1 gi|345005628|ref|YP_004808481.1| - 1.6e-06 27.7 0.1 0.016 15.0 0.0 2.9 2 0 0 2 2 2 2 PAS domain PAS PF00989.19 gi|345005628|ref|YP_004808481.1| - 5.2e-05 23.0 1.7 0.53 10.0 0.0 4.0 4 0 0 4 4 4 2 PAS fold Sigma70_r4 PF04545.11 gi|345005628|ref|YP_004808481.1| - 0.0037 16.5 0.1 0.051 12.8 0.0 2.9 3 0 0 3 3 3 1 Sigma-70, region 4 PAS_7 PF12860.2 gi|345005628|ref|YP_004808481.1| - 0.015 15.2 2.2 2.1 8.3 0.0 3.7 3 1 0 3 3 3 0 PAS fold HTH_22 PF13309.1 gi|345005628|ref|YP_004808481.1| - 0.047 13.4 0.0 0.23 11.2 0.0 2.3 1 0 0 1 1 1 0 HTH domain GATase PF00117.23 gi|345005629|ref|YP_004808482.1| - 1.7e-18 66.7 0.1 2.2e-18 66.3 0.0 1.1 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|345005629|ref|YP_004808482.1| - 6.3e-10 38.8 1.3 3e-09 36.6 0.9 2.0 1 1 0 1 1 1 1 Peptidase C26 DUF2528 PF10800.3 gi|345005629|ref|YP_004808482.1| - 0.091 13.1 0.0 0.17 12.2 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2528) SecY PF00344.15 gi|345005632|ref|YP_004808485.1| - 1.9e-91 306.5 18.9 2.6e-91 306.1 13.1 1.2 1 0 0 1 1 1 1 SecY translocase Plug_translocon PF10559.4 gi|345005632|ref|YP_004808485.1| - 1.9e-09 36.8 0.8 5.4e-09 35.3 0.6 1.9 1 0 0 1 1 1 1 Plug domain of Sec61p Phage_holin_5 PF06946.6 gi|345005632|ref|YP_004808485.1| - 0.0083 16.2 0.3 0.048 13.8 0.0 2.4 2 0 0 2 2 2 1 Phage holin Ribosomal_L18e PF00828.14 gi|345005633|ref|YP_004808486.1| - 1.7e-24 86.5 0.1 1.7e-24 86.5 0.1 1.4 2 0 0 2 2 2 1 Ribosomal protein L18e/L15 Ribosomal_L30 PF00327.15 gi|345005634|ref|YP_004808487.1| - 3.4e-10 39.3 0.0 5.1e-10 38.7 0.0 1.3 1 0 0 1 1 1 1 Ribosomal protein L30p/L7e Ribosomal_S5 PF00333.15 gi|345005635|ref|YP_004808488.1| - 3.2e-26 90.8 0.7 9.7e-26 89.3 0.5 1.9 1 0 0 1 1 1 1 Ribosomal protein S5, N-terminal domain Ribosomal_S5_C PF03719.10 gi|345005635|ref|YP_004808488.1| - 3.8e-22 77.3 0.2 5.6e-22 76.7 0.1 1.3 1 0 0 1 1 1 1 Ribosomal protein S5, C-terminal domain Ribosomal_L18p PF00861.17 gi|345005636|ref|YP_004808489.1| - 5.2e-33 113.7 0.0 6.4e-33 113.4 0.0 1.1 1 0 0 1 1 1 1 Ribosomal L18p/L5e family Ribosomal_L19e PF01280.15 gi|345005637|ref|YP_004808490.1| - 7.5e-52 175.0 2.5 8.2e-52 174.9 1.7 1.0 1 0 0 1 1 1 1 Ribosomal protein L19e Herpes_BLRF2 PF05812.7 gi|345005637|ref|YP_004808490.1| - 0.1 12.3 0.5 0.21 11.3 0.1 1.6 2 0 0 2 2 2 0 Herpesvirus BLRF2 protein DUF4025 PF13217.1 gi|345005637|ref|YP_004808490.1| - 0.14 12.0 0.3 0.32 10.8 0.2 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF4025) Ribosomal_L32e PF01655.13 gi|345005638|ref|YP_004808491.1| - 2.8e-37 127.1 1.5 5e-37 126.3 0.7 1.6 2 0 0 2 2 2 1 Ribosomal protein L32 HHH_5 PF14520.1 gi|345005638|ref|YP_004808491.1| - 5.1e-14 52.1 4.6 7.3e-14 51.6 0.4 2.5 3 1 0 3 3 3 1 Helix-hairpin-helix domain HHH PF00633.18 gi|345005638|ref|YP_004808491.1| - 1.1e-08 34.2 0.8 0.0077 15.8 0.0 3.0 3 0 0 3 3 3 2 Helix-hairpin-helix motif DNA_pol_lambd_f PF10391.4 gi|345005638|ref|YP_004808491.1| - 9.3e-08 31.5 0.0 3.2e-07 29.8 0.0 1.9 1 1 0 1 1 1 1 Fingers domain of DNA polymerase lambda HHH_2 PF12826.2 gi|345005638|ref|YP_004808491.1| - 1.4e-06 28.0 0.1 3.9e-06 26.6 0.1 1.8 1 0 0 1 1 1 1 Helix-hairpin-helix motif Cdd1 PF11731.3 gi|345005638|ref|YP_004808491.1| - 0.00015 21.6 0.0 0.001 18.9 0.0 2.3 2 0 0 2 2 2 1 Pathogenicity locus HHH_3 PF12836.2 gi|345005638|ref|YP_004808491.1| - 0.0015 18.4 0.1 0.39 10.6 0.0 2.6 1 1 1 2 2 2 1 Helix-hairpin-helix motif DUF4332 PF14229.1 gi|345005638|ref|YP_004808491.1| - 0.012 15.5 0.0 0.033 14.1 0.0 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF4332) HHH_8 PF14716.1 gi|345005638|ref|YP_004808491.1| - 0.032 14.4 0.1 1.4 9.1 0.0 2.6 1 1 1 2 2 2 0 Helix-hairpin-helix domain TfoX_C PF04994.8 gi|345005638|ref|YP_004808491.1| - 0.034 14.0 0.0 0.26 11.2 0.0 2.1 2 0 0 2 2 2 0 TfoX C-terminal domain RNA_pol_A_CTD PF03118.10 gi|345005638|ref|YP_004808491.1| - 0.054 12.9 0.0 0.12 11.8 0.0 1.5 1 0 0 1 1 1 0 Bacterial RNA polymerase, alpha chain C terminal domain Ribosomal_L6 PF00347.18 gi|345005639|ref|YP_004808492.1| - 2e-25 89.1 0.0 5.1e-12 46.1 0.0 2.1 2 0 0 2 2 2 2 Ribosomal protein L6 BON PF04972.12 gi|345005639|ref|YP_004808492.1| - 0.0015 18.2 1.5 1.2 8.9 0.1 3.7 4 0 0 4 4 4 2 BON domain Ribosomal_S8 PF00410.14 gi|345005640|ref|YP_004808493.1| - 5.3e-22 78.0 0.0 7.4e-22 77.5 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein S8 Ribosomal_S14 PF00253.16 gi|345005641|ref|YP_004808494.1| - 6.8e-15 54.1 5.3 8.3e-15 53.9 3.7 1.1 1 0 0 1 1 1 1 Ribosomal protein S14p/S29e Ribosomal_L37ae PF01780.14 gi|345005641|ref|YP_004808494.1| - 0.019 14.8 0.6 0.022 14.6 0.4 1.1 1 0 0 1 1 1 0 Ribosomal L37ae protein family ArfGap PF01412.13 gi|345005641|ref|YP_004808494.1| - 0.076 12.8 0.2 0.08 12.7 0.2 1.2 1 0 0 1 1 1 0 Putative GTPase activating protein for Arf A2L_zn_ribbon PF08792.5 gi|345005641|ref|YP_004808494.1| - 0.079 12.4 1.0 0.11 11.9 0.7 1.3 1 0 0 1 1 1 0 A2L zinc ribbon domain DUF1451 PF07295.6 gi|345005641|ref|YP_004808494.1| - 0.12 12.1 1.2 0.15 11.8 0.9 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1451) DUF2296 PF10058.4 gi|345005641|ref|YP_004808494.1| - 0.16 11.7 1.8 0.31 10.7 1.3 1.6 1 1 0 1 1 1 0 Predicted integral membrane metal-binding protein (DUF2296) Sgf11 PF08209.6 gi|345005641|ref|YP_004808494.1| - 0.57 9.5 5.2 0.78 9.0 0.1 2.1 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) Rsm1 PF08600.5 gi|345005641|ref|YP_004808494.1| - 1.9 8.3 4.2 30 4.5 2.9 2.1 1 1 0 1 1 1 0 Rsm1-like Ribosomal_L5_C PF00673.16 gi|345005642|ref|YP_004808495.1| - 1.4e-21 75.9 0.0 2.3e-21 75.3 0.0 1.3 1 0 0 1 1 1 1 ribosomal L5P family C-terminus Ribosomal_L5 PF00281.14 gi|345005642|ref|YP_004808495.1| - 1.9e-13 49.9 0.0 8.4e-13 47.8 0.0 1.9 2 0 0 2 2 2 1 Ribosomal protein L5 Ribosomal_S4e PF00900.15 gi|345005643|ref|YP_004808496.1| - 4.6e-22 77.4 0.0 8.1e-22 76.6 0.0 1.4 1 0 0 1 1 1 1 Ribosomal family S4e RS4NT PF08071.7 gi|345005643|ref|YP_004808496.1| - 3.6e-11 42.7 0.0 6.4e-11 41.9 0.0 1.3 1 0 0 1 1 1 1 RS4NT (NUC023) domain S4 PF01479.20 gi|345005643|ref|YP_004808496.1| - 0.0059 16.0 0.0 0.012 15.0 0.0 1.6 1 0 0 1 1 1 1 S4 domain KOW PF00467.24 gi|345005643|ref|YP_004808496.1| - 0.023 14.4 0.1 0.061 13.0 0.1 1.8 1 0 0 1 1 1 0 KOW motif Cadherin-like PF12733.2 gi|345005643|ref|YP_004808496.1| - 0.13 12.5 4.3 0.39 11.0 1.9 2.3 1 1 1 2 2 2 0 Cadherin-like beta sandwich domain PPC PF04151.10 gi|345005643|ref|YP_004808496.1| - 0.4 11.6 3.6 0.35 11.8 0.7 2.0 1 1 0 2 2 2 0 Bacterial pre-peptidase C-terminal domain KOW PF00467.24 gi|345005644|ref|YP_004808497.1| - 6.8e-06 25.6 1.0 6.8e-06 25.6 0.7 1.8 2 1 0 2 2 2 1 KOW motif Ribosomal_L14 PF00238.14 gi|345005645|ref|YP_004808498.1| - 1.4e-36 124.8 0.1 1.6e-36 124.7 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein L14p/L23e Ribosomal_S17 PF00366.15 gi|345005646|ref|YP_004808499.1| - 1.4e-28 98.6 3.0 1.7e-28 98.4 2.1 1.1 1 0 0 1 1 1 1 Ribosomal protein S17 UPF0086 PF01868.11 gi|345005647|ref|YP_004808500.1| - 3.1e-22 78.0 0.1 1.3e-21 76.0 0.0 1.8 1 1 0 1 1 1 1 Domain of unknown function UPF0086 Ribosomal_L29 PF00831.18 gi|345005648|ref|YP_004808501.1| - 3.6e-19 68.1 0.1 4e-19 68.0 0.0 1.0 1 0 0 1 1 1 1 Ribosomal L29 protein KH_2 PF07650.12 gi|345005649|ref|YP_004808502.1| - 9.9e-16 57.0 0.0 2.2e-15 55.9 0.0 1.6 1 0 0 1 1 1 1 KH domain Ribosomal_S3_C PF00189.15 gi|345005649|ref|YP_004808502.1| - 7.5e-15 54.9 0.1 1.1e-14 54.3 0.1 1.3 1 0 0 1 1 1 1 Ribosomal protein S3, C-terminal domain KH_1 PF00013.24 gi|345005649|ref|YP_004808502.1| - 0.0013 18.3 0.4 0.0051 16.4 0.3 2.1 1 0 0 1 1 1 1 KH domain KH_5 PF13184.1 gi|345005649|ref|YP_004808502.1| - 0.002 17.9 0.1 0.0081 15.9 0.0 2.0 2 0 0 2 2 2 1 NusA-like KH domain KH_3 PF13014.1 gi|345005649|ref|YP_004808502.1| - 0.021 14.4 0.6 0.082 12.5 0.4 2.0 1 0 0 1 1 1 0 KH domain KH_4 PF13083.1 gi|345005649|ref|YP_004808502.1| - 0.27 10.9 0.2 0.27 10.9 0.1 2.9 3 0 0 3 3 3 0 KH domain Ribosomal_L22 PF00237.14 gi|345005650|ref|YP_004808503.1| - 2e-24 85.5 0.0 2.4e-24 85.3 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L22p/L17e Ribosomal_S19 PF00203.16 gi|345005651|ref|YP_004808504.1| - 6.7e-26 89.7 0.0 8.9e-26 89.3 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein S19 Ribosomal_L2_C PF03947.13 gi|345005652|ref|YP_004808505.1| - 1.3e-44 151.0 1.6 1.8e-44 150.6 1.1 1.2 1 0 0 1 1 1 1 Ribosomal Proteins L2, C-terminal domain Ribosomal_L2 PF00181.18 gi|345005652|ref|YP_004808505.1| - 7.1e-14 51.5 0.0 1.7e-13 50.3 0.0 1.7 1 0 0 1 1 1 1 Ribosomal Proteins L2, RNA binding domain Ribosomal_L23 PF00276.15 gi|345005653|ref|YP_004808506.1| - 2.4e-18 65.8 0.3 3.4e-18 65.3 0.2 1.2 1 1 0 1 1 1 1 Ribosomal protein L23 P2 PF07194.6 gi|345005653|ref|YP_004808506.1| - 0.12 12.2 0.7 0.18 11.6 0.5 1.3 1 0 0 1 1 1 0 P2 response regulator binding domain Ribosomal_L4 PF00573.17 gi|345005654|ref|YP_004808507.1| - 2.5e-44 150.9 0.1 2.8e-44 150.7 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein L4/L1 family Ribosomal_L3 PF00297.17 gi|345005655|ref|YP_004808508.1| - 2.6e-84 282.7 0.0 5e-84 281.7 0.0 1.4 2 0 0 2 2 2 1 Ribosomal protein L3 Methyltrn_RNA_3 PF02598.12 gi|345005656|ref|YP_004808509.1| - 2.9e-55 187.6 0.0 3.4e-55 187.4 0.0 1.0 1 0 0 1 1 1 1 Putative RNA methyltransferase eIF-1a PF01176.14 gi|345005656|ref|YP_004808509.1| - 0.04 13.3 0.1 0.11 11.9 0.1 1.8 1 0 0 1 1 1 0 Translation initiation factor 1A / IF-1 Glyoxalase_2 PF12681.2 gi|345005657|ref|YP_004808510.1| - 3.7e-10 40.3 0.0 4.7e-10 40.0 0.0 1.1 1 0 0 1 1 1 1 Glyoxalase-like domain Glyoxalase PF00903.20 gi|345005657|ref|YP_004808510.1| - 4.1e-08 33.2 0.0 5.1e-08 32.9 0.0 1.1 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_3 PF13468.1 gi|345005657|ref|YP_004808510.1| - 0.031 14.1 0.0 7.1 6.5 0.0 2.1 2 0 0 2 2 2 0 Glyoxalase-like domain Virul_fac_BrkB PF03631.10 gi|345005659|ref|YP_004808512.1| - 5e-32 111.2 24.7 7.1e-32 110.7 17.1 1.2 1 0 0 1 1 1 1 Virulence factor BrkB PIRT PF15099.1 gi|345005659|ref|YP_004808512.1| - 0.6 9.3 3.8 8.2 5.6 0.2 2.9 3 0 0 3 3 3 0 Phosphoinositide-interacting protein family DUF4064 PF13273.1 gi|345005659|ref|YP_004808512.1| - 5.5 7.1 9.1 20 5.3 0.2 3.3 2 1 1 3 3 3 0 Protein of unknown function (DUF4064) DUF1028 PF06267.7 gi|345005660|ref|YP_004808513.1| - 2.7e-48 163.9 0.1 3.1e-48 163.7 0.1 1.0 1 0 0 1 1 1 1 Family of unknown function (DUF1028) Gag_p10 PF02337.12 gi|345005660|ref|YP_004808513.1| - 0.027 14.2 0.0 0.045 13.4 0.0 1.3 1 0 0 1 1 1 0 Retroviral GAG p10 protein Peptidase_M32 PF02074.10 gi|345005661|ref|YP_004808514.1| - 1.6e-142 475.6 0.3 1.9e-142 475.4 0.2 1.0 1 0 0 1 1 1 1 Carboxypeptidase Taq (M32) metallopeptidase Flavi_NS5 PF00972.15 gi|345005661|ref|YP_004808514.1| - 0.038 11.8 0.0 0.058 11.2 0.0 1.2 1 0 0 1 1 1 0 Flavivirus RNA-directed RNA polymerase Bac_luciferase PF00296.15 gi|345005662|ref|YP_004808515.1| - 7.7e-70 235.4 1.0 9.2e-70 235.1 0.7 1.1 1 0 0 1 1 1 1 Luciferase-like monooxygenase adh_short PF00106.20 gi|345005663|ref|YP_004808516.1| - 1.2e-30 106.6 1.4 1.6e-30 106.2 1.0 1.2 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|345005663|ref|YP_004808516.1| - 2.1e-25 89.9 0.0 2.5e-25 89.6 0.0 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.5 gi|345005663|ref|YP_004808516.1| - 4.2e-12 46.1 0.4 9.8e-12 44.9 0.3 1.6 1 1 0 1 1 1 1 KR domain 3Beta_HSD PF01073.14 gi|345005663|ref|YP_004808516.1| - 0.0069 15.1 0.0 0.0083 14.8 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Epimerase PF01370.16 gi|345005663|ref|YP_004808516.1| - 0.016 14.6 0.1 0.022 14.2 0.1 1.2 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family Eno-Rase_NADH_b PF12242.3 gi|345005663|ref|YP_004808516.1| - 0.052 13.3 0.0 0.052 13.3 0.0 2.0 2 0 0 2 2 2 0 NAD(P)H binding domain of trans-2-enoyl-CoA reductase Ldh_1_N PF00056.18 gi|345005663|ref|YP_004808516.1| - 0.093 12.5 0.0 0.16 11.7 0.0 1.4 1 0 0 1 1 1 0 lactate/malate dehydrogenase, NAD binding domain Peptidase_M28 PF04389.12 gi|345005664|ref|YP_004808517.1| - 2.2e-19 69.8 0.5 4e-19 69.0 0.1 1.6 2 0 0 2 2 2 1 Peptidase family M28 RNase_H PF00075.19 gi|345005666|ref|YP_004808519.1| - 5.1e-11 43.0 0.0 1.3e-10 41.7 0.0 1.7 2 0 0 2 2 2 1 RNase H RVT_3 PF13456.1 gi|345005666|ref|YP_004808519.1| - 2.8e-06 27.0 0.0 4.8e-06 26.2 0.0 1.4 1 0 0 1 1 1 1 Reverse transcriptase-like XdhC_C PF13478.1 gi|345005666|ref|YP_004808519.1| - 0.035 14.4 0.0 1.4 9.2 0.0 2.3 2 0 0 2 2 2 0 XdhC Rossmann domain Aldedh PF00171.17 gi|345005667|ref|YP_004808520.1| - 3.9e-149 496.9 0.0 4.8e-149 496.6 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family LuxC PF05893.9 gi|345005667|ref|YP_004808520.1| - 0.00044 19.0 0.0 0.00057 18.7 0.0 1.2 1 0 0 1 1 1 1 Acyl-CoA reductase (LuxC) NAD_binding_4 PF07993.7 gi|345005668|ref|YP_004808521.1| - 1.1e-47 162.0 0.0 1.4e-47 161.7 0.0 1.1 1 0 0 1 1 1 1 Male sterility protein Epimerase PF01370.16 gi|345005668|ref|YP_004808521.1| - 9.6e-19 67.7 0.0 1.5e-18 67.0 0.0 1.3 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|345005668|ref|YP_004808521.1| - 9e-14 50.8 0.0 1.2e-13 50.4 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.12 gi|345005668|ref|YP_004808521.1| - 0.003 16.4 0.2 0.01 14.7 0.1 1.8 1 1 0 1 1 1 1 RmlD substrate binding domain Polysacc_synt_2 PF02719.10 gi|345005668|ref|YP_004808521.1| - 0.011 14.5 0.0 0.016 14.1 0.0 1.2 1 0 0 1 1 1 0 Polysaccharide biosynthesis protein KR PF08659.5 gi|345005668|ref|YP_004808521.1| - 0.1 12.2 1.4 0.11 12.1 0.1 1.8 2 0 0 2 2 2 0 KR domain GCS2 PF04107.8 gi|345005669|ref|YP_004808522.1| - 8.9e-73 244.8 0.2 1.3e-72 244.3 0.1 1.2 1 0 0 1 1 1 1 Glutamate-cysteine ligase family 2(GCS2) Amidoligase_2 PF12224.3 gi|345005669|ref|YP_004808522.1| - 0.015 14.9 0.1 3.6 7.1 0.0 2.5 2 0 0 2 2 2 0 Putative amidoligase enzyme GCS PF03074.11 gi|345005669|ref|YP_004808522.1| - 0.083 11.9 0.0 0.13 11.3 0.0 1.1 1 0 0 1 1 1 0 Glutamate-cysteine ligase Fibrillarin PF01269.12 gi|345005670|ref|YP_004808523.1| - 1.5e-54 184.3 0.0 1.8e-54 184.0 0.0 1.0 1 0 0 1 1 1 1 Fibrillarin Nop PF01798.13 gi|345005671|ref|YP_004808524.1| - 7.2e-42 142.2 0.0 1.3e-41 141.3 0.0 1.4 1 0 0 1 1 1 1 Putative snoRNA binding domain PAS_3 PF08447.6 gi|345005671|ref|YP_004808524.1| - 0.11 12.6 0.3 6.9 6.8 0.0 2.8 1 1 1 2 2 2 0 PAS fold Peripla_BP_6 PF13458.1 gi|345005672|ref|YP_004808525.1| - 2.1e-31 109.5 11.5 2.5e-31 109.3 8.0 1.0 1 0 0 1 1 1 1 Periplasmic binding protein ANF_receptor PF01094.23 gi|345005672|ref|YP_004808525.1| - 5.6e-14 51.6 0.0 4.2e-13 48.7 0.0 1.9 1 1 0 1 1 1 1 Receptor family ligand binding region Peripla_BP_5 PF13433.1 gi|345005672|ref|YP_004808525.1| - 2e-06 26.8 0.0 0.00014 20.7 0.0 2.1 2 0 0 2 2 2 2 Periplasmic binding protein domain TAT_signal PF10518.4 gi|345005672|ref|YP_004808525.1| - 0.0028 17.5 0.8 0.0028 17.5 0.6 3.0 1 1 1 2 2 2 1 TAT (twin-arginine translocation) pathway signal sequence BPD_transp_2 PF02653.11 gi|345005673|ref|YP_004808526.1| - 1.1e-37 129.4 38.9 1.3e-37 129.1 27.0 1.1 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component BIV_Env PF05858.7 gi|345005673|ref|YP_004808526.1| - 0.094 10.6 0.4 0.13 10.2 0.3 1.3 1 0 0 1 1 1 0 Bovine immunodeficiency virus surface protein (SU) BPD_transp_2 PF02653.11 gi|345005674|ref|YP_004808527.1| - 9.2e-40 136.2 37.3 9.2e-40 136.2 25.8 1.3 2 0 0 2 2 2 1 Branched-chain amino acid transport system / permease component BTP PF05232.7 gi|345005674|ref|YP_004808527.1| - 0.09 12.5 3.5 0.3 10.8 1.4 2.7 1 1 0 1 1 1 0 Bacterial Transmembrane Pair family ABC_tran PF00005.22 gi|345005675|ref|YP_004808528.1| - 1.6e-31 109.4 0.0 2.4e-31 108.8 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|345005675|ref|YP_004808528.1| - 1.2e-10 41.8 0.1 7.4e-06 26.1 0.0 2.1 2 0 0 2 2 2 2 AAA domain BCA_ABC_TP_C PF12399.3 gi|345005675|ref|YP_004808528.1| - 8.8e-08 31.6 0.0 1.5e-07 30.9 0.0 1.4 1 0 0 1 1 1 1 Branched-chain amino acid ATP-binding cassette transporter SMC_N PF02463.14 gi|345005675|ref|YP_004808528.1| - 1.5e-05 24.3 1.6 0.00016 20.9 1.1 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|345005675|ref|YP_004808528.1| - 0.0002 20.7 0.1 0.00037 19.9 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|345005675|ref|YP_004808528.1| - 0.0004 20.7 0.1 0.00063 20.1 0.0 1.4 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|345005675|ref|YP_004808528.1| - 0.012 15.6 0.6 0.081 12.8 0.4 2.1 1 1 0 1 1 1 0 AAA ATPase domain AAA_30 PF13604.1 gi|345005675|ref|YP_004808528.1| - 0.032 13.8 0.2 0.083 12.4 0.1 1.7 1 1 0 1 1 1 0 AAA domain DUF258 PF03193.11 gi|345005675|ref|YP_004808528.1| - 0.042 13.0 0.0 0.076 12.1 0.0 1.4 1 1 0 1 1 1 0 Protein of unknown function, DUF258 Cache_1 PF02743.13 gi|345005675|ref|YP_004808528.1| - 0.082 12.4 0.1 0.26 10.8 0.0 1.8 2 0 0 2 2 2 0 Cache domain MMR_HSR1 PF01926.18 gi|345005675|ref|YP_004808528.1| - 0.095 12.6 0.5 0.25 11.2 0.3 2.1 1 1 0 1 1 1 0 50S ribosome-binding GTPase Aldedh PF00171.17 gi|345005675|ref|YP_004808528.1| - 0.13 10.6 0.3 0.19 10.0 0.2 1.2 1 0 0 1 1 1 0 Aldehyde dehydrogenase family AAA_33 PF13671.1 gi|345005675|ref|YP_004808528.1| - 0.14 11.9 0.8 0.24 11.2 0.5 1.5 1 1 0 1 1 1 0 AAA domain ABC_tran PF00005.22 gi|345005676|ref|YP_004808529.1| - 1.8e-30 106.0 0.0 2.4e-30 105.6 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|345005676|ref|YP_004808529.1| - 3.5e-13 50.1 0.0 2.7e-10 40.7 0.0 2.1 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|345005676|ref|YP_004808529.1| - 1.6e-05 24.2 0.2 0.0015 17.8 0.0 2.2 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|345005676|ref|YP_004808529.1| - 0.00012 21.4 0.0 0.00025 20.4 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|345005676|ref|YP_004808529.1| - 0.00098 19.4 0.0 0.0016 18.8 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_10 PF12846.2 gi|345005676|ref|YP_004808529.1| - 0.0012 18.3 0.6 0.0061 16.0 0.4 2.0 2 1 0 2 2 2 1 AAA-like domain AAA_16 PF13191.1 gi|345005676|ref|YP_004808529.1| - 0.0013 18.7 0.0 0.0028 17.6 0.0 1.6 1 1 0 1 1 1 1 AAA ATPase domain NB-ARC PF00931.17 gi|345005676|ref|YP_004808529.1| - 0.0056 15.5 0.4 0.0092 14.8 0.2 1.3 1 0 0 1 1 1 1 NB-ARC domain AAA_17 PF13207.1 gi|345005676|ref|YP_004808529.1| - 0.0075 17.0 0.1 0.012 16.3 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.1 gi|345005676|ref|YP_004808529.1| - 0.0087 15.6 0.4 0.017 14.7 0.0 1.6 2 0 0 2 2 2 1 AAA domain MobB PF03205.9 gi|345005676|ref|YP_004808529.1| - 0.014 15.0 0.0 0.023 14.4 0.0 1.3 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_33 PF13671.1 gi|345005676|ref|YP_004808529.1| - 0.015 15.1 0.2 0.043 13.6 0.1 2.0 1 1 0 1 1 1 0 AAA domain SbcCD_C PF13558.1 gi|345005676|ref|YP_004808529.1| - 0.02 14.8 0.7 0.46 10.4 0.5 2.3 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_22 PF13401.1 gi|345005676|ref|YP_004808529.1| - 0.021 14.9 0.1 0.071 13.2 0.0 1.8 2 0 0 2 2 2 0 AAA domain DUF258 PF03193.11 gi|345005676|ref|YP_004808529.1| - 0.026 13.6 0.0 0.043 13.0 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 MMR_HSR1 PF01926.18 gi|345005676|ref|YP_004808529.1| - 0.032 14.1 0.0 0.04 13.8 0.0 1.5 1 1 0 1 1 1 0 50S ribosome-binding GTPase NACHT PF05729.7 gi|345005676|ref|YP_004808529.1| - 0.033 13.8 0.1 0.067 12.8 0.0 1.5 1 0 0 1 1 1 0 NACHT domain MutS_V PF00488.16 gi|345005676|ref|YP_004808529.1| - 0.039 13.3 0.0 0.075 12.4 0.0 1.5 1 0 0 1 1 1 0 MutS domain V AAA_14 PF13173.1 gi|345005676|ref|YP_004808529.1| - 0.073 12.9 0.0 0.19 11.6 0.0 1.7 1 1 1 2 2 2 0 AAA domain AAA_25 PF13481.1 gi|345005676|ref|YP_004808529.1| - 0.078 12.3 0.0 0.15 11.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_5 PF07728.9 gi|345005676|ref|YP_004808529.1| - 0.1 12.3 0.0 0.5 10.0 0.0 2.0 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) RNA_helicase PF00910.17 gi|345005676|ref|YP_004808529.1| - 0.18 12.0 0.0 0.29 11.3 0.0 1.4 1 0 0 1 1 1 0 RNA helicase AAA_15 PF13175.1 gi|345005676|ref|YP_004808529.1| - 0.19 10.7 0.0 0.48 9.4 0.0 1.6 2 0 0 2 2 2 0 AAA ATPase domain OCD_Mu_crystall PF02423.10 gi|345005677|ref|YP_004808530.1| - 7.6e-07 28.1 0.5 7.9e-07 28.1 0.4 1.0 1 0 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family AdoMet_Synthase PF01941.14 gi|345005678|ref|YP_004808531.1| - 3e-70 236.7 0.0 1.9e-50 171.5 0.1 2.0 1 1 1 2 2 2 2 S-adenosylmethionine synthetase (AdoMet synthetase) CMD PF02627.15 gi|345005679|ref|YP_004808532.1| - 1.7e-09 37.3 0.2 6e-09 35.6 0.0 2.0 1 1 1 2 2 2 1 Carboxymuconolactone decarboxylase family MS_channel PF00924.13 gi|345005680|ref|YP_004808533.1| - 9.4e-43 145.9 0.0 9.4e-43 145.9 0.0 1.6 2 0 0 2 2 2 1 Mechanosensitive ion channel DUF1469 PF07332.6 gi|345005680|ref|YP_004808533.1| - 0.046 13.4 0.7 0.046 13.4 0.5 3.0 3 1 0 3 3 3 0 Protein of unknown function (DUF1469) Acetyltransf_3 PF13302.1 gi|345005681|ref|YP_004808534.1| - 0.013 15.6 0.0 0.03 14.4 0.0 1.5 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|345005681|ref|YP_004808534.1| - 0.013 15.4 0.0 0.035 14.1 0.0 1.8 1 0 0 1 1 1 0 Acetyltransferase (GNAT) family Acetyltransf_9 PF13527.1 gi|345005681|ref|YP_004808534.1| - 0.057 13.2 0.0 0.64 9.8 0.0 2.1 2 0 0 2 2 2 0 Acetyltransferase (GNAT) domain DUF457 PF04307.9 gi|345005682|ref|YP_004808535.1| - 1.1e-17 63.7 14.9 1.6e-17 63.2 10.3 1.2 1 0 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) zf-CDGSH PF09360.5 gi|345005683|ref|YP_004808536.1| - 2.1e-11 43.4 0.2 3.2e-11 42.8 0.1 1.3 1 0 0 1 1 1 1 Iron-binding zinc finger CDGSH type HCBP_related PF06594.6 gi|345005683|ref|YP_004808536.1| - 0.032 13.8 0.1 0.059 13.0 0.1 1.4 1 0 0 1 1 1 0 Haemolysin-type calcium binding protein related domain TrkA_N PF02254.13 gi|345005684|ref|YP_004808537.1| - 2.1e-40 137.3 5.9 2.9e-20 72.4 0.2 2.7 2 1 0 2 2 2 2 TrkA-N domain TrkA_C PF02080.16 gi|345005684|ref|YP_004808537.1| - 1.7e-21 75.5 2.3 4.3e-12 45.4 0.2 3.8 4 0 0 4 4 4 2 TrkA-C domain Ion_trans_2 PF07885.11 gi|345005684|ref|YP_004808537.1| - 1.4e-05 24.7 5.0 3.5e-05 23.4 3.5 1.6 1 0 0 1 1 1 1 Ion channel 2-Hacid_dh_C PF02826.14 gi|345005684|ref|YP_004808537.1| - 0.0075 15.4 0.1 0.014 14.5 0.1 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain OKR_DC_1_N PF03709.10 gi|345005684|ref|YP_004808537.1| - 0.017 15.1 0.3 0.054 13.5 0.0 2.0 2 0 0 2 2 2 0 Orn/Lys/Arg decarboxylase, N-terminal domain 3HCDH_N PF02737.13 gi|345005684|ref|YP_004808537.1| - 0.034 13.8 0.9 0.094 12.3 0.6 1.8 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain UDPG_MGDP_dh_N PF03721.9 gi|345005684|ref|YP_004808537.1| - 0.052 12.9 3.8 3.3 7.0 0.3 2.3 2 0 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain XdhC_C PF13478.1 gi|345005684|ref|YP_004808537.1| - 0.32 11.2 2.5 2.4 8.4 0.1 2.4 2 0 0 2 2 2 0 XdhC Rossmann domain ThiF PF00899.16 gi|345005684|ref|YP_004808537.1| - 1.3 8.8 6.6 2.2 8.1 2.2 2.6 2 1 0 2 2 2 0 ThiF family DAO PF01266.19 gi|345005684|ref|YP_004808537.1| - 3.1 6.5 8.1 61 2.3 5.6 2.3 1 1 0 1 1 1 0 FAD dependent oxidoreductase DUF998 PF06197.8 gi|345005685|ref|YP_004808538.1| - 3.9e-15 55.6 37.3 5.3e-15 55.2 25.9 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF998) MR_MLE_C PF13378.1 gi|345005685|ref|YP_004808538.1| - 0.036 14.0 0.3 0.072 13.0 0.2 1.5 1 0 0 1 1 1 0 Enolase C-terminal domain-like ABC2_membrane_3 PF12698.2 gi|345005686|ref|YP_004808539.1| - 1.3 7.9 9.3 1.4 7.9 6.5 1.0 1 0 0 1 1 1 0 ABC-2 family transporter protein CENP-F_leu_zip PF10473.4 gi|345005687|ref|YP_004808540.1| - 3.8e-06 26.8 16.9 3.8e-06 26.8 11.7 1.8 2 0 0 2 2 1 1 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Rab5-bind PF09311.6 gi|345005687|ref|YP_004808540.1| - 9.2e-05 22.4 12.0 9.2e-05 22.4 8.4 2.2 2 0 0 2 2 1 1 Rabaptin-like protein IncA PF04156.9 gi|345005687|ref|YP_004808540.1| - 0.00089 18.9 16.5 0.00089 18.9 11.5 1.8 2 0 0 2 2 1 1 IncA protein DUF3450 PF11932.3 gi|345005687|ref|YP_004808540.1| - 0.001 18.3 5.0 0.001 18.3 3.5 1.7 2 0 0 2 2 1 1 Protein of unknown function (DUF3450) bZIP_2 PF07716.10 gi|345005687|ref|YP_004808540.1| - 0.0011 18.7 15.6 0.025 14.3 4.2 2.7 1 1 1 2 2 2 2 Basic region leucine zipper TMF_TATA_bd PF12325.3 gi|345005687|ref|YP_004808540.1| - 0.0024 17.6 12.2 0.0068 16.1 8.5 1.7 1 0 0 1 1 1 1 TATA element modulatory factor 1 TATA binding THOC7 PF05615.8 gi|345005687|ref|YP_004808540.1| - 0.0034 17.6 7.2 0.0066 16.7 5.0 1.4 1 0 0 1 1 1 1 Tho complex subunit 7 Tropomyosin_1 PF12718.2 gi|345005687|ref|YP_004808540.1| - 0.0062 16.3 17.7 0.0062 16.3 12.3 2.6 2 1 0 2 2 2 1 Tropomyosin like DUF342 PF03961.8 gi|345005687|ref|YP_004808540.1| - 0.0072 14.7 2.2 0.011 14.2 1.5 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF342) Reo_sigmaC PF04582.7 gi|345005687|ref|YP_004808540.1| - 0.0096 15.1 1.1 0.015 14.5 0.8 1.2 1 0 0 1 1 1 1 Reovirus sigma C capsid protein bZIP_1 PF00170.16 gi|345005687|ref|YP_004808540.1| - 0.0098 15.8 11.6 0.015 15.2 2.5 2.5 1 1 1 2 2 2 1 bZIP transcription factor Spc7 PF08317.6 gi|345005687|ref|YP_004808540.1| - 0.01 14.5 5.9 0.016 13.8 4.1 1.2 1 0 0 1 1 1 0 Spc7 kinetochore protein Allexi_40kDa PF05549.6 gi|345005687|ref|YP_004808540.1| - 0.011 15.0 1.8 0.023 13.9 1.3 1.5 1 0 0 1 1 1 0 Allexivirus 40kDa protein Atg14 PF10186.4 gi|345005687|ref|YP_004808540.1| - 0.012 14.6 7.6 0.021 13.7 5.3 1.3 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 CASP_C PF08172.7 gi|345005687|ref|YP_004808540.1| - 0.013 14.5 17.6 0.15 11.0 2.5 2.4 1 1 1 2 2 2 0 CASP C terminal ADIP PF11559.3 gi|345005687|ref|YP_004808540.1| - 0.015 15.2 10.4 0.015 15.2 7.2 2.1 2 0 0 2 2 2 0 Afadin- and alpha -actinin-Binding GAS PF13851.1 gi|345005687|ref|YP_004808540.1| - 0.017 14.3 8.6 0.034 13.3 5.9 1.4 1 0 0 1 1 1 0 Growth-arrest specific micro-tubule binding AAA_13 PF13166.1 gi|345005687|ref|YP_004808540.1| - 0.017 13.5 2.7 0.028 12.9 1.9 1.2 1 0 0 1 1 1 0 AAA domain Cep57_CLD_2 PF14197.1 gi|345005687|ref|YP_004808540.1| - 0.029 14.3 20.6 0.08 12.8 14.3 1.8 1 0 0 1 1 1 0 Centrosome localisation domain of PPC89 DUF1664 PF07889.7 gi|345005687|ref|YP_004808540.1| - 0.029 14.1 2.9 0.057 13.2 2.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1664) V_ATPase_I PF01496.14 gi|345005687|ref|YP_004808540.1| - 0.057 11.2 4.4 0.085 10.7 3.0 1.2 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family TBPIP PF07106.8 gi|345005687|ref|YP_004808540.1| - 0.057 12.9 6.6 0.11 12.0 4.5 1.4 1 0 0 1 1 1 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) HALZ PF02183.13 gi|345005687|ref|YP_004808540.1| - 0.19 11.4 11.1 4.9 6.9 2.3 2.6 1 1 1 2 2 2 0 Homeobox associated leucine zipper BLOC1_2 PF10046.4 gi|345005687|ref|YP_004808540.1| - 0.21 11.7 3.5 0.46 10.6 2.4 1.5 1 0 0 1 1 1 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 FlaC_arch PF05377.6 gi|345005687|ref|YP_004808540.1| - 0.29 11.0 4.8 0.58 10.0 1.7 2.3 1 1 1 2 2 2 0 Flagella accessory protein C (FlaC) DUF4618 PF15397.1 gi|345005687|ref|YP_004808540.1| - 0.36 10.1 8.0 1 8.6 5.5 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF4618) Seryl_tRNA_N PF02403.17 gi|345005687|ref|YP_004808540.1| - 0.45 10.5 15.1 0.025 14.5 6.5 1.8 2 0 0 2 2 1 0 Seryl-tRNA synthetase N-terminal domain Macoilin PF09726.4 gi|345005687|ref|YP_004808540.1| - 0.57 8.4 13.0 0.79 7.9 9.0 1.1 1 0 0 1 1 1 0 Transmembrane protein Bacillus_HBL PF05791.6 gi|345005687|ref|YP_004808540.1| - 0.61 9.4 1.8 1.4 8.2 0.9 1.7 2 0 0 2 2 2 0 Bacillus haemolytic enterotoxin (HBL) DUF812 PF05667.6 gi|345005687|ref|YP_004808540.1| - 0.66 8.4 16.8 0.98 7.8 11.6 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF812) TMPIT PF07851.8 gi|345005687|ref|YP_004808540.1| - 0.91 8.5 2.9 1.5 7.8 2.0 1.2 1 0 0 1 1 1 0 TMPIT-like protein Fmp27_WPPW PF10359.4 gi|345005687|ref|YP_004808540.1| - 1.1 7.6 13.4 0.0099 14.3 3.8 1.5 2 0 0 2 2 1 0 RNA pol II promoter Fmp27 protein domain DUF904 PF06005.7 gi|345005687|ref|YP_004808540.1| - 1.3 9.3 16.7 1.3 9.3 4.5 2.5 1 1 1 2 2 2 0 Protein of unknown function (DUF904) Pox_A_type_inc PF04508.7 gi|345005687|ref|YP_004808540.1| - 1.4 8.9 11.2 2 8.4 0.0 3.7 1 1 1 3 3 3 0 Viral A-type inclusion protein repeat Cortex-I_coil PF09304.5 gi|345005687|ref|YP_004808540.1| - 1.6 8.7 18.7 0.058 13.4 8.8 1.6 2 0 0 2 2 1 0 Cortexillin I, coiled coil PspB PF06667.7 gi|345005687|ref|YP_004808540.1| - 1.7 8.6 12.4 2.7 7.9 1.9 2.5 1 1 1 2 2 2 0 Phage shock protein B Prefoldin PF02996.12 gi|345005687|ref|YP_004808540.1| - 1.7 8.3 7.8 5.6 6.6 0.8 2.5 1 1 1 2 2 2 0 Prefoldin subunit TPR_MLP1_2 PF07926.7 gi|345005687|ref|YP_004808540.1| - 1.9 8.2 16.9 1.3 8.7 7.5 2.6 1 1 2 3 3 3 0 TPR/MLP1/MLP2-like protein Not3 PF04065.10 gi|345005687|ref|YP_004808540.1| - 1.9 7.7 14.4 0.035 13.3 5.1 1.6 2 0 0 2 2 1 0 Not1 N-terminal domain, CCR4-Not complex component IFT20 PF14931.1 gi|345005687|ref|YP_004808540.1| - 2.4 8.0 11.9 1.2 9.0 5.9 2.2 1 1 1 2 2 2 0 Intraflagellar transport complex B, subunit 20 TelA PF05816.6 gi|345005687|ref|YP_004808540.1| - 3.5 6.2 10.9 0.81 8.3 1.5 2.3 1 1 1 2 2 2 0 Toxic anion resistance protein (TelA) APG6 PF04111.7 gi|345005687|ref|YP_004808540.1| - 3.7 6.5 23.3 0.02 13.9 9.6 1.8 2 0 0 2 2 2 0 Autophagy protein Apg6 DUF4200 PF13863.1 gi|345005687|ref|YP_004808540.1| - 3.8 7.4 21.3 0.038 13.9 8.5 2.1 2 0 0 2 2 1 0 Domain of unknown function (DUF4200) Prefoldin_2 PF01920.15 gi|345005687|ref|YP_004808540.1| - 3.9 7.2 13.6 7.2 6.4 3.0 2.6 1 1 1 2 2 2 0 Prefoldin subunit CorA PF01544.13 gi|345005687|ref|YP_004808540.1| - 4 6.3 5.2 6.9 5.6 3.6 1.3 1 0 0 1 1 1 0 CorA-like Mg2+ transporter protein AAA_23 PF13476.1 gi|345005687|ref|YP_004808540.1| - 4.6 7.5 5.5 9.4 6.5 3.8 1.5 1 0 0 1 1 1 0 AAA domain TMF_DNA_bd PF12329.3 gi|345005687|ref|YP_004808540.1| - 6.2 6.6 21.9 0.75 9.6 11.0 2.4 2 1 0 2 2 1 0 TATA element modulatory factor 1 DNA binding HTH_24 PF13412.1 gi|345005688|ref|YP_004808541.1| - 0.00028 20.2 0.0 0.00047 19.4 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_12 PF08461.5 gi|345005688|ref|YP_004808541.1| - 0.0082 15.8 0.0 0.014 15.0 0.0 1.6 1 1 0 1 1 1 1 Ribonuclease R winged-helix domain TrmB PF01978.14 gi|345005688|ref|YP_004808541.1| - 0.029 14.0 0.0 0.035 13.7 0.0 1.2 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB MotA_activ PF09114.5 gi|345005688|ref|YP_004808541.1| - 0.056 13.1 0.0 0.063 13.0 0.0 1.1 1 0 0 1 1 1 0 Transcription factor MotA, activation domain HTH_20 PF12840.2 gi|345005688|ref|YP_004808541.1| - 0.06 13.1 0.2 0.19 11.5 0.0 1.9 1 1 1 2 2 2 0 Helix-turn-helix domain Phage_rep_org_N PF09681.5 gi|345005688|ref|YP_004808541.1| - 0.084 12.4 0.0 0.17 11.4 0.0 1.5 1 1 1 2 2 2 0 N-terminal phage replisome organiser (Phage_rep_org_N) HTH_5 PF01022.15 gi|345005688|ref|YP_004808541.1| - 0.085 12.5 0.2 0.22 11.2 0.1 1.7 1 1 0 1 1 1 0 Bacterial regulatory protein, arsR family Adenylsucc_synt PF00709.16 gi|345005689|ref|YP_004808542.1| - 1.1e-147 492.1 0.0 1.2e-147 491.9 0.0 1.0 1 0 0 1 1 1 1 Adenylosuccinate synthetase Trm112p PF03966.11 gi|345005690|ref|YP_004808543.1| - 1.1e-09 38.5 1.1 2.5e-09 37.3 0.8 1.6 1 1 0 1 1 1 1 Trm112p-like protein Zn_ribbon_recom PF13408.1 gi|345005690|ref|YP_004808543.1| - 0.099 12.9 0.0 0.15 12.3 0.0 1.3 1 0 0 1 1 1 0 Recombinase zinc beta ribbon domain BsuPI PF12690.2 gi|345005691|ref|YP_004808544.1| - 3.3e-16 58.7 0.0 4e-16 58.5 0.0 1.1 1 0 0 1 1 1 1 Intracellular proteinase inhibitor MltA PF03562.12 gi|345005691|ref|YP_004808544.1| - 0.045 13.4 0.0 0.073 12.7 0.0 1.3 1 1 0 1 1 1 0 MltA specific insert domain Epimerase PF01370.16 gi|345005692|ref|YP_004808545.1| - 6.4e-46 156.7 0.0 7.6e-46 156.4 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.12 gi|345005692|ref|YP_004808545.1| - 5.8e-22 77.9 0.0 6.7e-22 77.6 0.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain 3Beta_HSD PF01073.14 gi|345005692|ref|YP_004808545.1| - 7e-12 44.6 0.0 8.2e-12 44.4 0.0 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_10 PF13460.1 gi|345005692|ref|YP_004808545.1| - 2.5e-11 43.9 0.1 3.3e-11 43.5 0.1 1.2 1 0 0 1 1 1 1 NADH(P)-binding Polysacc_synt_2 PF02719.10 gi|345005692|ref|YP_004808545.1| - 7.2e-11 41.5 0.5 1.5e-09 37.2 0.4 2.6 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.7 gi|345005692|ref|YP_004808545.1| - 7e-09 34.9 0.0 1.4e-06 27.4 0.0 2.2 1 1 1 2 2 2 2 Male sterility protein adh_short PF00106.20 gi|345005692|ref|YP_004808545.1| - 6.6e-06 26.1 0.2 1.2e-05 25.3 0.1 1.4 1 0 0 1 1 1 1 short chain dehydrogenase TrkA_N PF02254.13 gi|345005692|ref|YP_004808545.1| - 0.0096 15.9 0.3 0.02 14.8 0.2 1.5 1 0 0 1 1 1 1 TrkA-N domain DapB_N PF01113.15 gi|345005692|ref|YP_004808545.1| - 0.02 14.8 0.3 0.035 14.0 0.2 1.5 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus Trm56 PF01994.11 gi|345005693|ref|YP_004808546.1| - 6.4e-47 158.2 0.0 8.1e-47 157.9 0.0 1.1 1 0 0 1 1 1 1 tRNA ribose 2'-O-methyltransferase, aTrm56 B12-binding PF02310.14 gi|345005693|ref|YP_004808546.1| - 0.077 12.8 0.0 0.13 12.1 0.0 1.5 1 0 0 1 1 1 0 B12 binding domain TFIIE_alpha PF02002.12 gi|345005694|ref|YP_004808547.1| - 9.5e-20 70.0 0.1 1.8e-19 69.2 0.0 1.5 2 0 0 2 2 2 1 TFIIE alpha subunit HypA PF01155.14 gi|345005694|ref|YP_004808547.1| - 0.0019 17.8 0.1 0.0026 17.4 0.0 1.2 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family Phage_rep_org_N PF09681.5 gi|345005694|ref|YP_004808547.1| - 0.0047 16.4 0.0 0.73 9.4 0.0 2.2 2 0 0 2 2 2 2 N-terminal phage replisome organiser (Phage_rep_org_N) zinc-ribbons_6 PF07191.7 gi|345005694|ref|YP_004808547.1| - 0.0089 15.7 0.3 0.016 14.9 0.2 1.4 1 0 0 1 1 1 1 zinc-ribbons TrmB PF01978.14 gi|345005694|ref|YP_004808547.1| - 0.023 14.3 0.0 5.9 6.6 0.0 2.4 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB DNA_ligase_ZBD PF03119.11 gi|345005694|ref|YP_004808547.1| - 0.029 14.0 0.1 0.054 13.2 0.1 1.5 1 0 0 1 1 1 0 NAD-dependent DNA ligase C4 zinc finger domain TF_Zn_Ribbon PF08271.7 gi|345005694|ref|YP_004808547.1| - 0.17 11.2 3.7 1.3 8.4 0.3 2.8 1 1 1 2 2 2 0 TFIIB zinc-binding zinc_ribbon_2 PF13240.1 gi|345005694|ref|YP_004808547.1| - 0.25 10.9 0.2 0.25 10.9 0.1 1.9 2 0 0 2 2 2 0 zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|345005694|ref|YP_004808547.1| - 0.31 11.0 3.3 1.3 9.0 2.4 1.9 1 1 0 1 1 1 0 Zinc ribbon domain DUF2110 PF09883.4 gi|345005695|ref|YP_004808548.1| - 7.7e-83 277.5 0.0 8.7e-83 277.3 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2110) Ub-Mut7C PF14451.1 gi|345005695|ref|YP_004808548.1| - 0.11 11.9 0.0 0.26 10.8 0.0 1.6 1 0 0 1 1 1 0 Mut7-C ubiquitin COX14 PF14880.1 gi|345005696|ref|YP_004808549.1| - 0.2 11.3 0.0 0.2 11.3 0.0 1.9 2 0 0 2 2 2 0 Cytochrome oxidase c assembly zf-C2H2_4 PF13894.1 gi|345005698|ref|YP_004808551.1| - 0.0032 17.7 0.3 0.0042 17.3 0.2 1.2 1 0 0 1 1 1 1 C2H2-type zinc finger zf-C2H2_3 PF13878.1 gi|345005698|ref|YP_004808551.1| - 0.064 12.8 0.6 0.1 12.1 0.4 1.4 1 1 0 1 1 1 0 zinc-finger of acetyl-transferase ESCO TAXi_N PF14543.1 gi|345005698|ref|YP_004808551.1| - 0.07 13.0 0.2 0.07 13.0 0.2 1.0 1 0 0 1 1 1 0 Xylanase inhibitor N-terminal RNHCP PF12647.2 gi|345005698|ref|YP_004808551.1| - 0.098 12.4 0.1 0.1 12.4 0.1 1.1 1 0 0 1 1 1 0 RNHCP domain His_biosynth PF00977.16 gi|345005700|ref|YP_004808553.1| - 5.4e-80 267.9 0.1 6.1e-80 267.7 0.1 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein Dus PF01207.12 gi|345005700|ref|YP_004808553.1| - 1.4e-09 37.2 0.0 8.2e-06 24.8 0.0 2.2 2 0 0 2 2 2 2 Dihydrouridine synthase (Dus) ThiG PF05690.9 gi|345005700|ref|YP_004808553.1| - 3e-08 33.0 0.9 2e-05 23.8 0.1 2.1 2 0 0 2 2 2 2 Thiazole biosynthesis protein ThiG NMO PF03060.10 gi|345005700|ref|YP_004808553.1| - 0.00023 20.4 2.0 0.012 14.8 0.1 2.1 2 0 0 2 2 2 2 Nitronate monooxygenase DHO_dh PF01180.16 gi|345005700|ref|YP_004808553.1| - 0.0014 17.6 0.5 0.021 13.8 0.0 2.1 2 0 0 2 2 2 1 Dihydroorotate dehydrogenase PcrB PF01884.12 gi|345005700|ref|YP_004808553.1| - 0.0015 17.8 0.6 0.0047 16.2 0.2 1.8 1 1 1 2 2 2 1 PcrB family TMP-TENI PF02581.12 gi|345005700|ref|YP_004808553.1| - 0.006 15.7 0.3 0.11 11.6 0.0 2.1 2 0 0 2 2 2 1 Thiamine monophosphate synthase/TENI IMPDH PF00478.20 gi|345005700|ref|YP_004808553.1| - 0.0067 15.3 1.3 0.01 14.7 0.1 1.7 2 0 0 2 2 2 1 IMP dehydrogenase / GMP reductase domain G3P_antiterm PF04309.7 gi|345005700|ref|YP_004808553.1| - 0.051 12.5 0.0 0.078 12.0 0.0 1.2 1 0 0 1 1 1 0 Glycerol-3-phosphate responsive antiterminator FMN_dh PF01070.13 gi|345005700|ref|YP_004808553.1| - 0.32 9.7 1.9 0.3 9.8 0.3 1.6 2 0 0 2 2 2 0 FMN-dependent dehydrogenase RNA_pol_L_2 PF13656.1 gi|345005701|ref|YP_004808554.1| - 1.7e-17 62.6 0.0 1.9e-17 62.4 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain RNA_pol_L PF01193.19 gi|345005701|ref|YP_004808554.1| - 1.5e-09 36.7 0.0 1.9e-09 36.4 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain GHMP_kinases_N PF00288.21 gi|345005702|ref|YP_004808555.1| - 5.8e-11 42.2 0.0 1.4e-10 41.0 0.0 1.6 1 0 0 1 1 1 1 GHMP kinases N terminal domain GHMP_kinases_N PF00288.21 gi|345005703|ref|YP_004808556.1| - 3.7e-09 36.5 3.0 4.9e-09 36.1 0.9 2.2 2 0 0 2 2 2 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.8 gi|345005703|ref|YP_004808556.1| - 0.086 13.0 2.3 0.095 12.9 0.1 2.3 2 1 0 2 2 2 0 GHMP kinases C terminal DUF4402 PF14352.1 gi|345005703|ref|YP_004808556.1| - 0.25 11.8 3.3 0.22 11.9 1.0 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4402) CM_2 PF01817.16 gi|345005704|ref|YP_004808557.1| - 4.3e-18 65.1 2.8 4.9e-18 65.0 2.0 1.0 1 0 0 1 1 1 1 Chorismate mutase type II DUF4404 PF14357.1 gi|345005704|ref|YP_004808557.1| - 0.013 15.8 1.2 0.017 15.5 0.8 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4404) Ribosomal_L29 PF00831.18 gi|345005704|ref|YP_004808557.1| - 0.099 12.3 0.1 0.29 10.8 0.0 1.7 2 0 0 2 2 2 0 Ribosomal L29 protein DUF4256 PF14066.1 gi|345005705|ref|YP_004808558.1| - 0.00066 19.2 0.8 0.00067 19.1 0.5 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF4256) EnY2 PF10163.4 gi|345005705|ref|YP_004808558.1| - 0.023 14.6 1.4 0.026 14.4 1.0 1.1 1 0 0 1 1 1 0 Transcription factor e(y)2 Imm3 PF14425.1 gi|345005705|ref|YP_004808558.1| - 0.048 13.6 0.2 0.071 13.0 0.2 1.3 1 0 0 1 1 1 0 Immunity protein Imm3 DUF4320 PF14208.1 gi|345005705|ref|YP_004808558.1| - 0.088 12.7 0.5 0.15 11.9 0.2 1.5 1 1 1 2 2 2 0 Domain of unknown function (DUF4320) YueH PF14166.1 gi|345005705|ref|YP_004808558.1| - 0.095 12.4 0.5 0.12 12.1 0.3 1.3 1 0 0 1 1 1 0 YueH-like protein CARD PF00619.16 gi|345005705|ref|YP_004808558.1| - 0.12 12.2 0.5 0.16 11.8 0.3 1.2 1 0 0 1 1 1 0 Caspase recruitment domain T4_baseplate PF12322.3 gi|345005705|ref|YP_004808558.1| - 0.2 10.8 3.3 0.21 10.8 2.3 1.0 1 0 0 1 1 1 0 T4 bacteriophage base plate protein RHH_1 PF01402.16 gi|345005705|ref|YP_004808558.1| - 0.62 10.0 3.7 40 4.3 0.0 3.6 2 1 0 3 3 3 0 Ribbon-helix-helix protein, copG family PIN_2 PF10130.4 gi|345005706|ref|YP_004808559.1| - 3.3e-32 111.2 0.8 3.8e-32 111.0 0.5 1.1 1 0 0 1 1 1 1 PIN domain PIN PF01850.16 gi|345005706|ref|YP_004808559.1| - 2.6e-07 30.9 1.7 3.4e-07 30.6 1.2 1.2 1 0 0 1 1 1 1 PIN domain PIN_3 PF13470.1 gi|345005706|ref|YP_004808559.1| - 3.9e-07 30.7 0.5 6.4e-07 30.0 0.3 1.3 1 0 0 1 1 1 1 PIN domain PIN PF01850.16 gi|345005708|ref|YP_004808561.1| - 9.8e-08 32.3 0.9 1.2e-07 32.1 0.6 1.1 1 0 0 1 1 1 1 PIN domain MraZ PF02381.13 gi|345005709|ref|YP_004808562.1| - 0.018 14.7 0.0 0.029 14.1 0.0 1.4 1 0 0 1 1 1 0 MraZ protein FlgM PF04316.8 gi|345005709|ref|YP_004808562.1| - 0.077 12.9 0.2 0.097 12.6 0.1 1.3 1 0 0 1 1 1 0 Anti-sigma-28 factor, FlgM DUF4256 PF14066.1 gi|345005710|ref|YP_004808563.1| - 0.0012 18.4 0.2 0.0012 18.3 0.2 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF4256) Clat_adaptor_s PF01217.15 gi|345005710|ref|YP_004808563.1| - 0.012 15.3 0.1 0.013 15.2 0.0 1.1 1 0 0 1 1 1 0 Clathrin adaptor complex small chain CARD PF00619.16 gi|345005710|ref|YP_004808563.1| - 0.026 14.3 0.1 0.036 13.9 0.1 1.2 1 0 0 1 1 1 0 Caspase recruitment domain YueH PF14166.1 gi|345005710|ref|YP_004808563.1| - 0.039 13.7 0.2 0.047 13.4 0.1 1.3 1 0 0 1 1 1 0 YueH-like protein EnY2 PF10163.4 gi|345005710|ref|YP_004808563.1| - 0.064 13.1 0.4 0.073 13.0 0.3 1.1 1 0 0 1 1 1 0 Transcription factor e(y)2 NdhM PF10664.4 gi|345005710|ref|YP_004808563.1| - 0.067 13.1 0.2 0.084 12.7 0.2 1.1 1 0 0 1 1 1 0 Cyanobacterial and plastid NDH-1 subunit M DUF4320 PF14208.1 gi|345005710|ref|YP_004808563.1| - 0.17 11.8 0.4 0.33 10.9 0.1 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4320) PemK PF02452.12 gi|345005711|ref|YP_004808564.1| - 7.4e-27 93.7 0.1 8.3e-27 93.5 0.1 1.0 1 0 0 1 1 1 1 PemK-like protein SQS_PSY PF00494.14 gi|345005712|ref|YP_004808565.1| - 0.028 13.7 1.2 0.031 13.5 0.8 1.0 1 0 0 1 1 1 0 Squalene/phytoene synthase YccJ PF13993.1 gi|345005712|ref|YP_004808565.1| - 0.16 12.0 3.6 0.22 11.6 2.5 1.3 1 1 0 1 1 1 0 YccJ-like protein Clr5 PF14420.1 gi|345005713|ref|YP_004808566.1| - 0.15 11.9 0.0 0.23 11.3 0.0 1.3 1 0 0 1 1 1 0 Clr5 domain PIN PF01850.16 gi|345005714|ref|YP_004808567.1| - 0.0053 17.0 0.2 0.01 16.1 0.1 1.6 1 1 1 2 2 2 1 PIN domain UDPG_MGDP_dh_N PF03721.9 gi|345005716|ref|YP_004808569.1| - 1e-40 139.0 0.0 2.2e-40 137.9 0.0 1.5 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain UDPG_MGDP_dh PF00984.14 gi|345005716|ref|YP_004808569.1| - 2.1e-24 85.5 0.0 3.8e-24 84.7 0.0 1.5 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, central domain UDPG_MGDP_dh_C PF03720.10 gi|345005716|ref|YP_004808569.1| - 7.7e-23 80.6 0.0 2.5e-22 79.0 0.0 1.9 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain NAD_binding_2 PF03446.10 gi|345005716|ref|YP_004808569.1| - 4.2e-06 26.7 0.0 1.2e-05 25.2 0.0 1.7 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase ApbA PF02558.11 gi|345005716|ref|YP_004808569.1| - 0.0078 15.6 0.0 0.017 14.5 0.0 1.6 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA 3HCDH_N PF02737.13 gi|345005716|ref|YP_004808569.1| - 0.037 13.6 0.0 0.069 12.7 0.0 1.6 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.14 gi|345005716|ref|YP_004808569.1| - 0.043 12.9 0.0 1.9 7.6 0.0 2.3 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Mur_ligase PF01225.20 gi|345005716|ref|YP_004808569.1| - 0.1 12.7 0.0 9.9 6.3 0.0 2.7 2 0 0 2 2 2 0 Mur ligase family, catalytic domain Epimerase_2 PF02350.14 gi|345005717|ref|YP_004808570.1| - 3e-106 355.1 0.2 3.4e-106 354.9 0.2 1.0 1 0 0 1 1 1 1 UDP-N-acetylglucosamine 2-epimerase Glyco_trans_4_4 PF13579.1 gi|345005717|ref|YP_004808570.1| - 0.00082 19.5 0.0 0.0022 18.1 0.0 1.7 1 1 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_4_2 PF13477.1 gi|345005717|ref|YP_004808570.1| - 0.031 14.1 0.0 0.089 12.6 0.0 1.7 2 0 0 2 2 2 0 Glycosyl transferase 4-like Exo_endo_phos PF03372.18 gi|345005717|ref|YP_004808570.1| - 0.099 12.5 0.0 6.6 6.5 0.0 2.1 1 1 1 2 2 2 0 Endonuclease/Exonuclease/phosphatase family NeuB PF03102.9 gi|345005718|ref|YP_004808571.1| - 7.1e-78 261.0 0.0 9.4e-78 260.6 0.0 1.2 1 0 0 1 1 1 1 NeuB family AP_endonuc_2 PF01261.19 gi|345005718|ref|YP_004808571.1| - 3.9e-20 72.0 1.3 3.7e-17 62.3 0.4 3.1 3 1 0 3 3 3 2 Xylose isomerase-like TIM barrel SAF PF08666.7 gi|345005718|ref|YP_004808571.1| - 3.7e-09 36.8 0.1 8.3e-09 35.7 0.0 1.7 1 0 0 1 1 1 1 SAF domain SAF_2 PF13144.1 gi|345005718|ref|YP_004808571.1| - 0.0023 17.4 0.0 0.0039 16.7 0.0 1.3 1 0 0 1 1 1 1 SAF-like ParBc PF02195.13 gi|345005719|ref|YP_004808572.1| - 0.061 13.4 0.0 0.13 12.4 0.0 1.6 1 0 0 1 1 1 0 ParB-like nuclease domain Sulfatase PF00884.18 gi|345005720|ref|YP_004808573.1| - 0.012 14.8 0.1 0.015 14.4 0.1 1.2 1 0 0 1 1 1 0 Sulfatase Glycos_transf_2 PF00535.21 gi|345005721|ref|YP_004808574.1| - 0.012 15.3 0.0 0.02 14.5 0.0 1.4 1 0 0 1 1 1 0 Glycosyl transferase family 2 GNT-I PF03071.10 gi|345005721|ref|YP_004808574.1| - 0.5 8.8 4.9 0.69 8.3 3.4 1.1 1 0 0 1 1 1 0 GNT-I family Glycos_transf_2 PF00535.21 gi|345005722|ref|YP_004808575.1| - 6.5e-06 25.9 0.0 1.4e-05 24.8 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|345005722|ref|YP_004808575.1| - 6.2e-05 22.9 2.6 0.00012 22.0 1.8 1.5 1 1 0 1 1 1 1 Glycosyltransferase like family 2 GNT-I PF03071.10 gi|345005722|ref|YP_004808575.1| - 0.058 11.9 2.7 0.38 9.2 2.2 1.8 2 0 0 2 2 2 0 GNT-I family PS_pyruv_trans PF04230.8 gi|345005723|ref|YP_004808576.1| - 9.4e-15 55.0 0.0 1.4e-14 54.5 0.0 1.1 1 0 0 1 1 1 1 Polysaccharide pyruvyl transferase DUF484 PF04340.7 gi|345005723|ref|YP_004808576.1| - 0.016 14.6 0.1 0.027 13.9 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function, DUF484 Glyco_transf_9 PF01075.12 gi|345005723|ref|YP_004808576.1| - 0.06 12.5 0.0 0.1 11.7 0.0 1.3 1 0 0 1 1 1 0 Glycosyltransferase family 9 (heptosyltransferase) CTP_transf_3 PF02348.14 gi|345005724|ref|YP_004808577.1| - 1.6e-25 89.9 0.0 2.2e-25 89.5 0.0 1.2 1 0 0 1 1 1 1 Cytidylyltransferase NTP_transf_3 PF12804.2 gi|345005724|ref|YP_004808577.1| - 2.1e-06 27.9 0.1 2.7e-06 27.5 0.0 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.14 gi|345005724|ref|YP_004808577.1| - 0.0073 15.8 0.0 0.029 13.8 0.0 1.8 2 0 0 2 2 2 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Glyco_trans_1_4 PF13692.1 gi|345005726|ref|YP_004808579.1| - 1.6e-26 93.0 0.2 5.9e-26 91.2 0.0 1.9 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glycos_transf_1 PF00534.15 gi|345005726|ref|YP_004808579.1| - 3.1e-23 82.0 0.0 4.6e-23 81.5 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|345005726|ref|YP_004808579.1| - 2.1e-10 40.9 6.0 2.1e-10 40.9 4.2 2.5 2 1 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.1 gi|345005726|ref|YP_004808579.1| - 3.3e-10 40.0 0.1 1e-09 38.5 0.0 1.8 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|345005726|ref|YP_004808579.1| - 1.4e-08 34.6 0.6 6e-08 32.6 0.4 2.0 1 1 0 1 1 1 1 Glycosyltransferase Family 4 BATS PF06968.8 gi|345005726|ref|YP_004808579.1| - 0.0003 20.5 0.0 0.00064 19.5 0.0 1.5 1 0 0 1 1 1 1 Biotin and Thiamin Synthesis associated domain Methyltransf_21 PF05050.7 gi|345005727|ref|YP_004808580.1| - 1.7e-16 60.6 0.0 2.4e-15 56.8 0.0 2.1 1 1 0 1 1 1 1 Methyltransferase FkbM domain ABC_tran PF00005.22 gi|345005728|ref|YP_004808581.1| - 8.2e-33 113.5 0.0 1.4e-32 112.8 0.0 1.4 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.14 gi|345005728|ref|YP_004808581.1| - 4.1e-07 29.4 0.1 4.4e-05 22.8 0.0 2.3 1 1 1 2 2 2 1 RecF/RecN/SMC N terminal domain ABC_membrane PF00664.18 gi|345005728|ref|YP_004808581.1| - 3.3e-06 26.7 8.6 4.9e-06 26.1 6.0 1.2 1 0 0 1 1 1 1 ABC transporter transmembrane region AAA_17 PF13207.1 gi|345005728|ref|YP_004808581.1| - 6.8e-06 26.9 0.0 2.3e-05 25.1 0.0 2.0 1 1 0 1 1 1 1 AAA domain AAA_21 PF13304.1 gi|345005728|ref|YP_004808581.1| - 7.5e-06 26.1 0.0 0.023 14.6 0.0 2.3 2 0 0 2 2 2 2 AAA domain AAA_29 PF13555.1 gi|345005728|ref|YP_004808581.1| - 0.0039 16.6 0.0 0.0084 15.6 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|345005728|ref|YP_004808581.1| - 0.0041 17.1 0.1 0.01 15.8 0.0 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|345005728|ref|YP_004808581.1| - 0.0056 16.8 0.2 0.051 13.7 0.2 2.3 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|345005728|ref|YP_004808581.1| - 0.0079 16.0 0.0 0.016 15.0 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_25 PF13481.1 gi|345005728|ref|YP_004808581.1| - 0.019 14.3 0.0 0.25 10.7 0.0 2.4 2 0 0 2 2 2 0 AAA domain DUF258 PF03193.11 gi|345005728|ref|YP_004808581.1| - 0.024 13.8 0.0 0.042 13.0 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_18 PF13238.1 gi|345005728|ref|YP_004808581.1| - 0.027 14.7 0.0 0.055 13.7 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_5 PF07728.9 gi|345005728|ref|YP_004808581.1| - 0.032 13.9 0.0 0.1 12.3 0.0 1.8 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) Zeta_toxin PF06414.7 gi|345005728|ref|YP_004808581.1| - 0.06 12.4 0.0 0.12 11.4 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin AAA_30 PF13604.1 gi|345005728|ref|YP_004808581.1| - 0.067 12.7 0.1 0.23 10.9 0.0 1.8 2 0 0 2 2 2 0 AAA domain IstB_IS21 PF01695.12 gi|345005728|ref|YP_004808581.1| - 0.08 12.3 0.1 1 8.7 0.0 2.2 2 0 0 2 2 2 0 IstB-like ATP binding protein Mg_chelatase PF01078.16 gi|345005728|ref|YP_004808581.1| - 0.11 11.5 0.0 0.19 10.8 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI DZR PF12773.2 gi|345005729|ref|YP_004808582.1| - 0.0035 17.1 8.6 4 7.3 0.1 2.9 1 1 1 2 2 2 2 Double zinc ribbon RNHCP PF12647.2 gi|345005729|ref|YP_004808582.1| - 0.11 12.3 0.5 0.11 12.3 0.4 2.2 2 1 1 3 3 3 0 RNHCP domain DUF1272 PF06906.6 gi|345005729|ref|YP_004808582.1| - 0.24 11.2 8.7 0.47 10.3 1.0 2.8 2 1 1 3 3 3 0 Protein of unknown function (DUF1272) zf-C3HC4_3 PF13920.1 gi|345005729|ref|YP_004808582.1| - 0.25 11.0 11.7 1 9.0 4.4 2.9 2 1 0 2 2 2 0 Zinc finger, C3HC4 type (RING finger) zf-C4_Topoisom PF01396.14 gi|345005729|ref|YP_004808582.1| - 0.3 10.6 4.1 0.52 9.8 0.0 2.5 3 0 0 3 3 3 0 Topoisomerase DNA binding C4 zinc finger zf-LITAF-like PF10601.4 gi|345005729|ref|YP_004808582.1| - 0.63 9.9 5.2 3.8 7.4 0.0 3.0 2 1 1 3 3 3 0 LITAF-like zinc ribbon domain C1_1 PF00130.17 gi|345005729|ref|YP_004808582.1| - 0.68 9.7 5.4 55 3.5 3.6 2.9 2 1 0 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) Zn-ribbon_8 PF09723.5 gi|345005729|ref|YP_004808582.1| - 1 9.3 9.4 0.83 9.6 1.0 3.1 1 1 2 3 3 3 0 Zinc ribbon domain DUF3039 PF11238.3 gi|345005729|ref|YP_004808582.1| - 1.7 8.1 7.7 3 7.3 0.0 3.0 2 1 1 3 3 3 0 Protein of unknown function (DUF3039) TF_Zn_Ribbon PF08271.7 gi|345005729|ref|YP_004808582.1| - 1.7 8.0 11.8 4.9 6.5 0.5 3.6 2 1 1 3 3 3 0 TFIIB zinc-binding zf-RING_4 PF14570.1 gi|345005729|ref|YP_004808582.1| - 2.5 7.7 8.5 9.4 5.9 0.5 2.8 3 0 0 3 3 3 0 RING/Ubox like zinc-binding domain zf-ribbon_3 PF13248.1 gi|345005729|ref|YP_004808582.1| - 3.4 6.9 11.7 13 5.0 0.1 3.6 2 1 1 3 3 3 0 zinc-ribbon domain UPF0547 PF10571.4 gi|345005729|ref|YP_004808582.1| - 4.6 7.0 11.1 14 5.4 0.1 3.1 3 0 0 3 3 3 0 Uncharacterised protein family UPF0547 zf-TFIIB PF13453.1 gi|345005729|ref|YP_004808582.1| - 8.4 5.6 14.2 2.9 7.1 0.2 3.2 1 1 1 2 2 2 0 Transcription factor zinc-finger Abhydrolase_6 PF12697.2 gi|345005730|ref|YP_004808583.1| - 3.3e-26 92.5 0.1 4e-26 92.3 0.0 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_5 PF12695.2 gi|345005730|ref|YP_004808583.1| - 8.4e-15 54.7 0.0 1.1e-14 54.3 0.0 1.3 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|345005730|ref|YP_004808583.1| - 1.4e-14 54.2 0.0 1.6e-14 54.0 0.0 1.2 1 0 0 1 1 1 1 alpha/beta hydrolase fold Hydrolase_4 PF12146.3 gi|345005730|ref|YP_004808583.1| - 2.8e-05 23.8 0.2 4.9e-05 23.1 0.2 1.4 1 0 0 1 1 1 1 Putative lysophospholipase Ndr PF03096.9 gi|345005730|ref|YP_004808583.1| - 0.0018 16.8 0.0 0.0023 16.4 0.0 1.1 1 0 0 1 1 1 1 Ndr family Abhydrolase_2 PF02230.11 gi|345005730|ref|YP_004808583.1| - 0.007 15.8 0.0 0.012 15.0 0.0 1.3 1 0 0 1 1 1 1 Phospholipase/Carboxylesterase PGAP1 PF07819.8 gi|345005730|ref|YP_004808583.1| - 0.019 14.5 0.1 0.82 9.2 0.0 2.7 2 1 0 2 2 2 0 PGAP1-like protein FAD_binding_3 PF01494.14 gi|345005731|ref|YP_004808584.1| - 1.1e-32 113.4 0.1 4e-23 82.0 0.0 2.1 2 0 0 2 2 2 2 FAD binding domain FAD_binding_2 PF00890.19 gi|345005731|ref|YP_004808584.1| - 3.2e-05 22.9 0.2 0.1 11.4 0.0 2.1 2 0 0 2 2 2 2 FAD binding domain DAO PF01266.19 gi|345005731|ref|YP_004808584.1| - 0.00027 19.9 5.3 0.0042 16.0 0.8 2.3 1 1 1 2 2 2 2 FAD dependent oxidoreductase Thi4 PF01946.12 gi|345005731|ref|YP_004808584.1| - 0.00065 18.8 0.0 0.0011 18.1 0.0 1.3 1 0 0 1 1 1 1 Thi4 family NAD_binding_8 PF13450.1 gi|345005731|ref|YP_004808584.1| - 0.0009 19.2 0.4 0.0026 17.7 0.3 1.8 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox_2 PF07992.9 gi|345005731|ref|YP_004808584.1| - 0.0092 15.8 0.1 0.022 14.6 0.0 1.6 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase ThiF PF00899.16 gi|345005731|ref|YP_004808584.1| - 0.043 13.6 0.9 0.085 12.6 0.6 1.5 1 0 0 1 1 1 0 ThiF family Pyr_redox PF00070.22 gi|345005731|ref|YP_004808584.1| - 0.062 13.7 0.1 1.6 9.1 0.2 2.4 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.7 gi|345005731|ref|YP_004808584.1| - 0.07 12.0 0.3 0.087 11.7 0.2 1.3 1 1 0 1 1 1 0 Lycopene cyclase protein GIDA PF01134.17 gi|345005731|ref|YP_004808584.1| - 0.12 11.2 0.0 0.17 10.7 0.0 1.2 1 0 0 1 1 1 0 Glucose inhibited division protein A DUF290 PF01060.18 gi|345005731|ref|YP_004808584.1| - 0.14 12.1 0.0 0.25 11.3 0.0 1.3 1 0 0 1 1 1 0 Transthyretin-like family ApbA PF02558.11 gi|345005731|ref|YP_004808584.1| - 0.15 11.5 0.2 0.28 10.6 0.1 1.5 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA SE PF08491.5 gi|345005731|ref|YP_004808584.1| - 0.17 10.7 0.0 0.46 9.2 0.0 1.6 2 0 0 2 2 2 0 Squalene epoxidase HI0933_like PF03486.9 gi|345005731|ref|YP_004808584.1| - 0.24 9.8 0.1 0.32 9.4 0.1 1.1 1 0 0 1 1 1 0 HI0933-like protein AMP-binding PF00501.23 gi|345005732|ref|YP_004808585.1| - 3.5e-104 348.5 0.0 4.1e-104 348.2 0.0 1.0 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|345005732|ref|YP_004808585.1| - 3.5e-19 69.5 0.4 9.9e-19 68.0 0.2 1.8 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain Pro_CA PF00484.14 gi|345005733|ref|YP_004808586.1| - 8.3e-27 94.0 0.1 1.1e-26 93.6 0.1 1.2 1 0 0 1 1 1 1 Carbonic anhydrase 2_5_RNA_ligase2 PF13563.1 gi|345005733|ref|YP_004808586.1| - 0.071 12.8 0.0 0.15 11.7 0.0 1.5 1 0 0 1 1 1 0 2'-5' RNA ligase superfamily Methyltransf_26 PF13659.1 gi|345005735|ref|YP_004808588.1| - 9e-14 51.5 0.4 1.4e-13 50.8 0.3 1.4 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|345005735|ref|YP_004808588.1| - 1.2e-09 37.8 0.0 1.9e-09 37.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain PrmA PF06325.8 gi|345005735|ref|YP_004808588.1| - 1.2e-08 34.4 0.4 1.9e-08 33.7 0.3 1.3 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_18 PF12847.2 gi|345005735|ref|YP_004808588.1| - 2.2e-07 31.4 0.0 3.3e-07 30.8 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|345005735|ref|YP_004808588.1| - 2e-06 27.4 0.0 3e-06 26.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.13 gi|345005735|ref|YP_004808588.1| - 4.9e-06 26.2 0.0 6.2e-06 25.9 0.0 1.2 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Cons_hypoth95 PF03602.10 gi|345005735|ref|YP_004808588.1| - 1.7e-05 24.3 0.0 2.4e-05 23.8 0.0 1.2 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_11 PF08241.7 gi|345005735|ref|YP_004808588.1| - 0.00014 22.3 0.0 0.00027 21.3 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|345005735|ref|YP_004808588.1| - 0.0073 16.6 0.0 0.017 15.4 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|345005735|ref|YP_004808588.1| - 0.021 14.5 0.0 0.03 14.0 0.0 1.3 1 1 0 1 1 1 0 Methyltransferase domain AP_endonuc_2 PF01261.19 gi|345005736|ref|YP_004808589.1| - 0.0001 21.6 0.3 0.00013 21.3 0.2 1.0 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel Pilus_CpaD PF09476.5 gi|345005736|ref|YP_004808589.1| - 0.082 12.3 0.3 0.27 10.6 0.2 1.8 1 1 0 1 1 1 0 Pilus biogenesis CpaD protein (pilus_cpaD) TOBE_2 PF08402.5 gi|345005736|ref|YP_004808589.1| - 0.093 12.7 0.1 0.18 11.8 0.1 1.5 2 0 0 2 2 2 0 TOBE domain TFIIB PF00382.14 gi|345005737|ref|YP_004808590.1| - 1.4e-45 152.9 1.3 1.2e-23 82.6 0.1 2.2 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.7 gi|345005737|ref|YP_004808590.1| - 1.2e-17 62.9 2.1 2e-17 62.2 1.5 1.4 1 0 0 1 1 1 1 TFIIB zinc-binding HTH_23 PF13384.1 gi|345005737|ref|YP_004808590.1| - 0.0062 16.1 0.4 0.38 10.4 0.1 3.3 3 0 0 3 3 3 1 Homeodomain-like domain Sigma70_r4 PF04545.11 gi|345005737|ref|YP_004808590.1| - 0.0084 15.3 1.2 0.17 11.2 0.1 3.4 3 1 0 3 3 3 1 Sigma-70, region 4 Ribosomal_S27e PF01667.12 gi|345005737|ref|YP_004808590.1| - 0.018 14.5 0.2 0.036 13.6 0.1 1.4 1 0 0 1 1 1 0 Ribosomal protein S27 PhnA_Zn_Ribbon PF08274.7 gi|345005737|ref|YP_004808590.1| - 0.019 14.7 3.7 0.04 13.6 2.6 1.5 1 0 0 1 1 1 0 PhnA Zinc-Ribbon OrfB_Zn_ribbon PF07282.6 gi|345005737|ref|YP_004808590.1| - 0.024 14.2 0.7 0.064 12.9 0.4 1.8 2 0 0 2 2 1 0 Putative transposase DNA-binding domain A2L_zn_ribbon PF08792.5 gi|345005737|ref|YP_004808590.1| - 0.026 13.9 2.8 0.16 11.4 2.0 2.1 1 1 1 2 2 2 0 A2L zinc ribbon domain HTH_17 PF12728.2 gi|345005737|ref|YP_004808590.1| - 0.028 14.6 0.2 1.3 9.3 0.0 3.0 3 0 0 3 3 3 0 Helix-turn-helix domain Elf1 PF05129.8 gi|345005737|ref|YP_004808590.1| - 0.03 14.0 0.1 0.077 12.6 0.1 1.7 1 0 0 1 1 1 0 Transcription elongation factor Elf1 like HTH_3 PF01381.17 gi|345005737|ref|YP_004808590.1| - 0.07 12.9 0.1 3.5 7.5 0.0 3.2 3 0 0 3 3 3 0 Helix-turn-helix Lar_restr_allev PF14354.1 gi|345005737|ref|YP_004808590.1| - 0.086 13.1 0.5 0.21 11.9 0.3 1.7 1 0 0 1 1 1 0 Restriction alleviation protein Lar Trm112p PF03966.11 gi|345005737|ref|YP_004808590.1| - 0.098 13.0 2.1 0.67 10.3 1.4 2.4 1 1 0 1 1 1 0 Trm112p-like protein TrmB PF01978.14 gi|345005737|ref|YP_004808590.1| - 0.1 12.3 1.4 2.9 7.6 0.1 3.1 3 0 0 3 3 3 0 Sugar-specific transcriptional regulator TrmB zf-trcl PF13451.1 gi|345005737|ref|YP_004808590.1| - 0.43 10.2 5.2 0.51 10.0 0.2 2.5 1 1 1 2 2 2 0 Probable zinc-binding domain Zn-ribbon_8 PF09723.5 gi|345005737|ref|YP_004808590.1| - 2.7 8.0 4.5 7.9 6.5 0.5 2.4 1 1 1 2 2 2 0 Zinc ribbon domain PMT_2 PF13231.1 gi|345005738|ref|YP_004808591.1| - 3.5e-06 27.0 1.6 3.5e-06 27.0 1.1 4.8 4 1 1 5 5 5 3 Dolichyl-phosphate-mannose-protein mannosyltransferase TyeA PF09059.5 gi|345005739|ref|YP_004808592.1| - 0.11 12.4 0.4 0.21 11.5 0.3 1.4 1 0 0 1 1 1 0 TyeA Usp PF00582.21 gi|345005740|ref|YP_004808593.1| - 1.3e-41 142.1 2.4 1.4e-41 141.9 1.7 1.0 1 0 0 1 1 1 1 Universal stress protein family Amidohydro_3 PF07969.6 gi|345005740|ref|YP_004808593.1| - 0.01 15.0 0.8 0.13 11.4 0.6 2.0 1 1 0 1 1 1 0 Amidohydrolase family DUF3197 PF11432.3 gi|345005740|ref|YP_004808593.1| - 0.012 15.6 0.1 0.035 14.1 0.0 1.7 1 1 1 2 2 2 0 Protein of unknown function (DUF3197) MGS PF02142.17 gi|345005740|ref|YP_004808593.1| - 0.033 14.1 0.4 0.061 13.2 0.3 1.6 1 1 0 1 1 1 0 MGS-like domain Fer2 PF00111.22 gi|345005741|ref|YP_004808594.1| - 1.2e-11 44.1 2.7 1.6e-11 43.7 1.9 1.2 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer2_3 PF13085.1 gi|345005741|ref|YP_004808594.1| - 0.01 15.6 0.1 0.012 15.4 0.1 1.2 1 0 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain DHODB_Fe-S_bind PF10418.4 gi|345005741|ref|YP_004808594.1| - 0.099 12.1 0.3 0.24 10.9 0.2 1.6 1 0 0 1 1 1 0 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B Lactamase_B PF00753.22 gi|345005742|ref|YP_004808595.1| - 4.1e-19 68.9 3.1 6.5e-19 68.3 2.2 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Rhodanese PF00581.15 gi|345005742|ref|YP_004808595.1| - 3.1e-07 30.7 0.0 5.2e-07 30.0 0.0 1.4 1 0 0 1 1 1 1 Rhodanese-like domain Lactamase_B_2 PF12706.2 gi|345005742|ref|YP_004808595.1| - 0.01 15.3 0.3 0.07 12.6 0.2 2.2 1 1 1 2 2 2 0 Beta-lactamase superfamily domain Rubrerythrin PF02915.12 gi|345005743|ref|YP_004808596.1| - 0.00031 21.0 1.7 0.00042 20.6 0.2 1.9 2 1 0 2 2 2 1 Rubrerythrin Peptidase_S8 PF00082.17 gi|345005744|ref|YP_004808597.1| - 1.7e-48 165.2 13.1 1.7e-48 165.2 9.1 2.0 2 0 0 2 2 2 1 Subtilase family TAT_signal PF10518.4 gi|345005744|ref|YP_004808597.1| - 0.019 14.9 6.9 0.019 14.9 4.8 3.0 2 0 0 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence UCR_Fe-S_N PF10399.4 gi|345005744|ref|YP_004808597.1| - 0.052 12.7 3.5 0.16 11.1 2.4 1.9 1 0 0 1 1 1 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal Inhibitor_I9 PF05922.11 gi|345005744|ref|YP_004808597.1| - 0.13 12.8 0.0 0.26 11.8 0.0 1.5 1 0 0 1 1 1 0 Peptidase inhibitor I9 DUF2797 PF10977.3 gi|345005745|ref|YP_004808598.1| - 1.5e-50 172.0 1.0 2.1e-49 168.3 0.7 1.9 1 1 0 1 1 1 1 Protein of unknown function (DUF2797) SBDS PF01172.13 gi|345005746|ref|YP_004808599.1| - 7e-26 89.8 0.0 1.1e-25 89.1 0.0 1.3 1 0 0 1 1 1 1 Shwachman-Bodian-Diamond syndrome (SBDS) protein SBDS_C PF09377.5 gi|345005746|ref|YP_004808599.1| - 5.1e-19 68.1 0.0 8.1e-19 67.5 0.0 1.3 1 0 0 1 1 1 1 SBDS protein C-terminal domain DUF382 PF04037.8 gi|345005746|ref|YP_004808599.1| - 0.079 12.7 0.2 0.13 12.1 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF382) FUN14 PF04930.10 gi|345005747|ref|YP_004808600.1| - 3.8e-16 59.1 2.4 4.7e-16 58.9 1.7 1.1 1 0 0 1 1 1 1 FUN14 family Prenyltransf PF01255.14 gi|345005748|ref|YP_004808601.1| - 3.1e-74 248.8 0.0 3.9e-74 248.5 0.0 1.1 1 0 0 1 1 1 1 Putative undecaprenyl diphosphate synthase Prenyltransf PF01255.14 gi|345005749|ref|YP_004808602.1| - 3.3e-28 98.3 0.0 7.5e-28 97.1 0.0 1.5 2 0 0 2 2 2 1 Putative undecaprenyl diphosphate synthase DUF92 PF01940.11 gi|345005750|ref|YP_004808603.1| - 2.3e-57 193.7 19.5 2.3e-57 193.7 13.5 3.0 3 1 0 3 3 3 1 Integral membrane protein DUF92 Phage_holin_3 PF05106.7 gi|345005750|ref|YP_004808603.1| - 1.8 8.6 0.0 1.8 8.6 0.0 4.5 3 1 1 4 4 4 0 Phage holin family (Lysis protein S) Acetyltransf_1 PF00583.19 gi|345005751|ref|YP_004808604.1| - 1.6e-11 44.0 0.0 2.4e-11 43.5 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|345005751|ref|YP_004808604.1| - 7.8e-08 32.3 0.0 1.1e-07 31.9 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|345005751|ref|YP_004808604.1| - 9.4e-08 31.7 0.0 1.5e-07 31.0 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_10 PF13673.1 gi|345005751|ref|YP_004808604.1| - 1.9e-07 31.2 0.0 2.2e-07 31.0 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|345005751|ref|YP_004808604.1| - 0.0014 18.8 0.0 0.0016 18.5 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|345005751|ref|YP_004808604.1| - 0.0016 18.2 0.0 0.0077 16.0 0.0 2.0 2 1 0 2 2 2 1 Acetyltransferase (GNAT) domain PAS_8 PF13188.1 gi|345005751|ref|YP_004808604.1| - 0.0041 16.9 0.0 0.0087 15.8 0.0 1.6 2 0 0 2 2 2 1 PAS domain Acetyltransf_8 PF13523.1 gi|345005751|ref|YP_004808604.1| - 0.0087 15.9 0.0 0.015 15.2 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Toprim_4 PF13662.1 gi|345005752|ref|YP_004808605.1| - 2.8e-08 33.6 0.4 8.4e-08 32.1 0.2 1.9 1 0 0 1 1 1 1 Toprim domain HK97-gp10_like PF04883.7 gi|345005752|ref|YP_004808605.1| - 0.039 14.8 0.2 0.17 12.8 0.1 2.1 2 1 0 2 2 2 0 Bacteriophage HK97-gp10, putative tail-component DUF3311 PF11755.3 gi|345005753|ref|YP_004808606.1| - 6.5e-11 41.6 20.2 7.7e-11 41.3 14.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3311) DUF2975 PF11188.3 gi|345005753|ref|YP_004808606.1| - 0.13 11.9 1.8 0.17 11.6 1.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2975) TRAP-gamma PF07074.7 gi|345005753|ref|YP_004808606.1| - 0.48 9.9 4.0 0.58 9.6 2.8 1.2 1 0 0 1 1 1 0 Translocon-associated protein, gamma subunit (TRAP-gamma) FA_desaturase PF00487.19 gi|345005753|ref|YP_004808606.1| - 2 7.7 11.6 2.2 7.6 8.0 1.1 1 0 0 1 1 1 0 Fatty acid desaturase DUF3154 PF11351.3 gi|345005753|ref|YP_004808606.1| - 2.4 7.9 6.6 3.1 7.5 4.6 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3154) SSF PF00474.12 gi|345005754|ref|YP_004808607.1| - 1.7e-42 145.4 21.2 2.4e-42 145.0 14.7 1.2 1 0 0 1 1 1 1 Sodium:solute symporter family Syndecan PF01034.15 gi|345005754|ref|YP_004808607.1| - 1.2 8.8 3.2 1 9.0 0.3 2.5 2 0 0 2 2 2 0 Syndecan domain ABC_cobalt PF09819.4 gi|345005756|ref|YP_004808609.1| - 0.013 15.3 1.3 0.025 14.5 0.9 1.6 1 1 0 1 1 1 0 ABC-type cobalt transport system, permease component Cation_ATPase_C PF00689.16 gi|345005756|ref|YP_004808609.1| - 0.062 12.8 0.6 0.11 12.0 0.1 1.6 1 1 0 1 1 1 0 Cation transporting ATPase, C-terminus DUF1418 PF07214.7 gi|345005756|ref|YP_004808609.1| - 0.11 12.1 1.5 0.2 11.2 1.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1418) DUF2830 PF11125.3 gi|345005756|ref|YP_004808609.1| - 0.64 9.7 3.6 4.3 7.1 0.2 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF2830) Peptidase_S8 PF00082.17 gi|345005757|ref|YP_004808610.1| - 1.2e-16 60.7 11.0 2.6e-12 46.4 3.5 2.4 1 1 1 2 2 2 2 Subtilase family PPC PF04151.10 gi|345005757|ref|YP_004808610.1| - 6e-06 27.1 0.7 0.00017 22.4 0.1 3.1 2 0 0 2 2 2 1 Bacterial pre-peptidase C-terminal domain HTH_20 PF12840.2 gi|345005758|ref|YP_004808611.1| - 1.9e-10 40.3 0.6 3.2e-10 39.6 0.5 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|345005758|ref|YP_004808611.1| - 1.9e-07 30.5 1.4 2.5e-07 30.2 0.2 1.8 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family TrmB PF01978.14 gi|345005758|ref|YP_004808611.1| - 1.8e-05 24.3 0.0 2.8e-05 23.7 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|345005758|ref|YP_004808611.1| - 2e-05 24.1 0.1 3.7e-05 23.3 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|345005758|ref|YP_004808611.1| - 2.2e-05 23.7 0.0 3.6e-05 23.0 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Phage_rep_org_N PF09681.5 gi|345005758|ref|YP_004808611.1| - 0.0015 18.1 0.0 0.0021 17.6 0.0 1.2 1 0 0 1 1 1 1 N-terminal phage replisome organiser (Phage_rep_org_N) Rrf2 PF02082.15 gi|345005758|ref|YP_004808611.1| - 0.005 16.9 0.1 0.0097 16.0 0.1 1.4 1 0 0 1 1 1 1 Transcriptional regulator DUF2513 PF10711.4 gi|345005758|ref|YP_004808611.1| - 0.016 15.2 0.1 0.024 14.7 0.0 1.2 1 0 0 1 1 1 0 Hypothetical protein (DUF2513) DUF4423 PF14394.1 gi|345005758|ref|YP_004808611.1| - 0.03 13.8 0.0 0.043 13.3 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) TFIIE_alpha PF02002.12 gi|345005758|ref|YP_004808611.1| - 0.053 13.0 0.0 0.071 12.6 0.0 1.3 1 0 0 1 1 1 0 TFIIE alpha subunit FaeA PF04703.7 gi|345005758|ref|YP_004808611.1| - 0.073 13.2 0.0 0.13 12.4 0.0 1.4 1 0 0 1 1 1 0 FaeA-like protein HTH_IclR PF09339.5 gi|345005758|ref|YP_004808611.1| - 0.085 12.4 0.4 0.15 11.6 0.2 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain DUF742 PF05331.6 gi|345005758|ref|YP_004808611.1| - 0.085 12.4 0.1 0.14 11.7 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF742) HTH_45 PF14947.1 gi|345005758|ref|YP_004808611.1| - 0.14 12.0 0.0 0.23 11.2 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix MFS_1 PF07690.11 gi|345005759|ref|YP_004808612.1| - 4.4e-41 140.7 76.1 1e-34 119.8 31.0 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily LEA_2 PF03168.8 gi|345005760|ref|YP_004808613.1| - 2.4e-17 63.1 0.1 3.3e-07 30.6 0.0 2.3 2 0 0 2 2 2 2 Late embryogenesis abundant protein AIRS_C PF02769.17 gi|345005762|ref|YP_004808615.1| - 5.1e-23 81.7 0.7 7.3e-23 81.2 0.5 1.2 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.19 gi|345005762|ref|YP_004808615.1| - 2.2e-05 24.5 0.5 5.9e-05 23.2 0.0 2.0 2 0 0 2 2 2 1 AIR synthase related protein, N-terminal domain Aminotran_5 PF00266.14 gi|345005763|ref|YP_004808616.1| - 1.7e-19 69.7 0.0 1.1e-18 67.2 0.0 1.8 1 1 0 1 1 1 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.12 gi|345005763|ref|YP_004808616.1| - 0.0073 15.3 0.4 0.098 11.6 0.1 2.1 2 0 0 2 2 2 1 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.15 gi|345005763|ref|YP_004808616.1| - 0.045 12.0 0.0 0.069 11.4 0.0 1.2 1 0 0 1 1 1 0 Cys/Met metabolism PLP-dependent enzyme Pyr_redox_2 PF07992.9 gi|345005765|ref|YP_004808618.1| - 5.4e-13 49.2 0.5 5.4e-13 49.2 0.3 1.5 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|345005765|ref|YP_004808618.1| - 7.6e-10 39.0 0.3 3.5e-07 30.5 0.1 2.6 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|345005765|ref|YP_004808618.1| - 1.1e-05 25.5 0.9 0.024 14.7 0.4 3.1 1 1 2 3 3 3 3 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.1 gi|345005765|ref|YP_004808618.1| - 0.00021 21.0 3.2 2.6 7.8 0.1 3.9 2 2 2 4 4 4 3 FAD-NAD(P)-binding NAD_binding_8 PF13450.1 gi|345005765|ref|YP_004808618.1| - 0.0052 16.7 0.0 5.7 7.0 0.0 3.0 3 0 0 3 3 3 2 NAD(P)-binding Rossmann-like domain Lycopene_cycl PF05834.7 gi|345005765|ref|YP_004808618.1| - 0.054 12.3 0.2 11 4.8 0.0 2.7 3 0 0 3 3 3 0 Lycopene cyclase protein Radical_SAM PF04055.16 gi|345005766|ref|YP_004808619.1| - 3.9e-21 75.9 0.0 8.1e-21 74.8 0.0 1.6 1 0 0 1 1 1 1 Radical SAM superfamily Acetyltransf_1 PF00583.19 gi|345005766|ref|YP_004808619.1| - 3.3e-07 30.2 0.1 9.5e-07 28.7 0.1 1.9 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family PepSY_2 PF13670.1 gi|345005766|ref|YP_004808619.1| - 0.17 11.8 0.4 1.9 8.4 0.0 2.7 3 0 0 3 3 3 0 Peptidase propeptide and YPEB domain FbpA PF05833.6 gi|345005767|ref|YP_004808620.1| - 5.5e-88 295.4 0.9 7.4e-88 295.0 0.6 1.1 1 0 0 1 1 1 1 Fibronectin-binding protein A N-terminus (FbpA) DUF814 PF05670.8 gi|345005767|ref|YP_004808620.1| - 7.4e-28 96.2 0.0 1.4e-27 95.3 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF814) THOC7 PF05615.8 gi|345005767|ref|YP_004808620.1| - 0.3 11.3 10.7 1.1 9.4 0.6 2.4 2 0 0 2 2 2 0 Tho complex subunit 7 MAF_flag10 PF01973.13 gi|345005769|ref|YP_004808622.1| - 1e-22 80.4 0.0 1.2e-22 80.1 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF115 eRF1_1 PF03463.10 gi|345005770|ref|YP_004808623.1| - 2.8e-31 107.8 0.1 4.7e-31 107.1 0.1 1.3 1 0 0 1 1 1 1 eRF1 domain 1 eRF1_3 PF03465.10 gi|345005770|ref|YP_004808623.1| - 6.9e-25 87.5 3.4 7.6e-25 87.3 0.2 2.4 3 0 0 3 3 3 1 eRF1 domain 3 eRF1_2 PF03464.10 gi|345005770|ref|YP_004808623.1| - 4e-20 72.5 0.2 7.9e-20 71.5 0.0 1.6 2 0 0 2 2 2 1 eRF1 domain 2 Glyco_hydro_3_C PF01915.17 gi|345005770|ref|YP_004808623.1| - 0.024 14.1 1.1 0.064 12.7 0.0 1.9 2 0 0 2 2 2 0 Glycosyl hydrolase family 3 C-terminal domain OCD_Mu_crystall PF02423.10 gi|345005771|ref|YP_004808624.1| - 7.3e-61 205.6 1.4 9.2e-61 205.3 1.0 1.1 1 0 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family Shikimate_DH PF01488.15 gi|345005771|ref|YP_004808624.1| - 0.00024 21.2 0.0 0.00036 20.6 0.0 1.2 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase F420_oxidored PF03807.12 gi|345005771|ref|YP_004808624.1| - 0.0044 17.4 0.6 0.0087 16.4 0.4 1.5 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent Semialdhyde_dh PF01118.19 gi|345005771|ref|YP_004808624.1| - 0.072 13.3 1.1 0.16 12.2 0.0 2.0 2 0 0 2 2 2 0 Semialdehyde dehydrogenase, NAD binding domain NAD_binding_7 PF13241.1 gi|345005771|ref|YP_004808624.1| - 0.077 13.2 0.2 0.14 12.4 0.1 1.3 1 0 0 1 1 1 0 Putative NAD(P)-binding MFS_1 PF07690.11 gi|345005772|ref|YP_004808625.1| - 3.5e-39 134.5 67.0 2.4e-26 92.3 23.5 2.2 1 1 1 2 2 2 2 Major Facilitator Superfamily DUF3054 PF11255.3 gi|345005773|ref|YP_004808626.1| - 9.1e-24 83.4 13.5 1.1e-23 83.2 9.3 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3054) Methyltransf_11 PF08241.7 gi|345005774|ref|YP_004808627.1| - 1.1e-19 70.7 0.0 1.6e-19 70.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|345005774|ref|YP_004808627.1| - 2.9e-15 56.3 0.0 3.6e-15 56.0 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|345005774|ref|YP_004808627.1| - 1.4e-10 40.6 0.0 1.8e-10 40.3 0.0 1.3 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_25 PF13649.1 gi|345005774|ref|YP_004808627.1| - 1e-09 38.6 0.0 1.7e-09 37.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|345005774|ref|YP_004808627.1| - 1.1e-09 38.0 0.0 1.3e-09 37.7 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|345005774|ref|YP_004808627.1| - 8e-09 36.0 0.2 1.3e-08 35.4 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|345005774|ref|YP_004808627.1| - 1.1e-08 35.3 0.0 1.9e-08 34.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain MetW PF07021.7 gi|345005774|ref|YP_004808627.1| - 6.6e-06 25.6 0.0 8.4e-06 25.2 0.0 1.1 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_26 PF13659.1 gi|345005774|ref|YP_004808627.1| - 4.9e-05 23.3 1.5 0.00014 21.8 1.0 1.7 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_29 PF03141.11 gi|345005774|ref|YP_004808627.1| - 0.00033 19.1 0.0 0.00039 18.8 0.0 1.0 1 0 0 1 1 1 1 Putative S-adenosyl-L-methionine-dependent methyltransferase Methyltransf_24 PF13578.1 gi|345005774|ref|YP_004808627.1| - 0.0074 17.1 0.5 0.011 16.5 0.3 1.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_2 PF00891.13 gi|345005774|ref|YP_004808627.1| - 0.0098 15.1 0.2 0.012 14.7 0.2 1.1 1 0 0 1 1 1 1 O-methyltransferase Acetyltransf_1 PF00583.19 gi|345005775|ref|YP_004808628.1| - 1.3e-06 28.3 0.0 1.9e-06 27.8 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_CG PF14542.1 gi|345005775|ref|YP_004808628.1| - 0.0027 17.5 0.0 0.0048 16.7 0.0 1.4 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_8 PF13523.1 gi|345005775|ref|YP_004808628.1| - 0.0038 17.1 0.0 0.0057 16.5 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|345005775|ref|YP_004808628.1| - 0.13 12.3 0.0 0.22 11.6 0.0 1.3 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain XPG_I PF00867.13 gi|345005776|ref|YP_004808629.1| - 1.5e-25 89.0 0.0 2.9e-25 88.1 0.0 1.5 1 0 0 1 1 1 1 XPG I-region XPG_N PF00752.12 gi|345005776|ref|YP_004808629.1| - 3.5e-13 49.6 0.0 6.1e-13 48.9 0.0 1.4 1 0 0 1 1 1 1 XPG N-terminal domain 5_3_exonuc PF01367.15 gi|345005776|ref|YP_004808629.1| - 0.00038 20.6 0.2 0.00088 19.4 0.0 1.7 2 0 0 2 2 2 1 5'-3' exonuclease, C-terminal SAM fold DUF3631 PF12307.3 gi|345005777|ref|YP_004808630.1| - 0.19 11.6 0.6 0.28 11.0 0.4 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3631) BolA PF01722.13 gi|345005778|ref|YP_004808631.1| - 1.3e-21 76.3 0.6 1.5e-21 76.1 0.4 1.1 1 0 0 1 1 1 1 BolA-like protein Lyase_1 PF00206.15 gi|345005779|ref|YP_004808632.1| - 4.4e-109 364.4 0.1 4.4e-109 364.4 0.0 1.8 2 0 0 2 2 2 1 Lyase FumaraseC_C PF10415.4 gi|345005779|ref|YP_004808632.1| - 8.8e-24 83.3 0.7 8.8e-24 83.3 0.5 2.3 2 0 0 2 2 2 1 Fumarase C C-terminus GatB_N PF02934.10 gi|345005781|ref|YP_004808634.1| - 8.6e-72 241.4 0.0 1.3e-71 240.8 0.0 1.1 1 0 0 1 1 1 1 GatB/GatE catalytic domain GatB_Yqey PF02637.13 gi|345005781|ref|YP_004808634.1| - 3e-22 78.9 0.0 5.3e-22 78.1 0.0 1.4 1 0 0 1 1 1 1 GatB domain GAD PF02938.9 gi|345005781|ref|YP_004808634.1| - 5.7e-14 52.0 0.0 1.2e-13 51.0 0.0 1.5 1 0 0 1 1 1 1 GAD domain YqeY PF09424.5 gi|345005781|ref|YP_004808634.1| - 0.022 14.5 0.4 0.05 13.4 0.3 1.6 1 0 0 1 1 1 0 Yqey-like protein CARDB PF07705.6 gi|345005782|ref|YP_004808635.1| - 1.1e-10 41.4 6.2 0.00021 21.3 0.3 3.4 4 0 0 4 4 4 2 CARDB Transglut_C PF00927.17 gi|345005782|ref|YP_004808635.1| - 1.4e-08 34.7 0.0 0.0027 17.7 0.0 4.2 4 0 0 4 4 4 3 Transglutaminase family, C-terminal ig like domain ABC_tran PF00005.22 gi|345005783|ref|YP_004808636.1| - 3.9e-34 117.8 0.0 5e-34 117.5 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|345005783|ref|YP_004808636.1| - 2.2e-07 31.1 0.0 0.02 14.8 0.0 2.1 1 1 0 2 2 2 2 AAA domain AAA_29 PF13555.1 gi|345005783|ref|YP_004808636.1| - 2.9e-05 23.5 0.1 5.2e-05 22.6 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain DUF258 PF03193.11 gi|345005783|ref|YP_004808636.1| - 0.00012 21.3 0.0 0.00021 20.4 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_22 PF13401.1 gi|345005783|ref|YP_004808636.1| - 0.0015 18.6 0.1 0.0097 16.0 0.0 2.0 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|345005783|ref|YP_004808636.1| - 0.0021 17.3 0.1 0.086 12.0 0.1 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.1 gi|345005783|ref|YP_004808636.1| - 0.0047 16.9 0.2 0.0092 15.9 0.1 1.8 1 1 0 1 1 1 1 AAA ATPase domain AAA_25 PF13481.1 gi|345005783|ref|YP_004808636.1| - 0.0072 15.7 0.0 0.016 14.6 0.0 1.6 2 0 0 2 2 2 1 AAA domain AAA_10 PF12846.2 gi|345005783|ref|YP_004808636.1| - 0.0099 15.3 0.0 0.015 14.7 0.0 1.4 1 0 0 1 1 1 1 AAA-like domain AAA_23 PF13476.1 gi|345005783|ref|YP_004808636.1| - 0.018 15.3 0.0 0.026 14.8 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.1 gi|345005783|ref|YP_004808636.1| - 0.02 14.7 0.1 0.034 14.0 0.0 1.4 1 1 0 1 1 1 0 AAA domain AAA_17 PF13207.1 gi|345005783|ref|YP_004808636.1| - 0.025 15.3 0.1 0.046 14.5 0.0 1.6 1 1 0 1 1 1 0 AAA domain AAA_30 PF13604.1 gi|345005783|ref|YP_004808636.1| - 0.067 12.7 0.1 0.14 11.7 0.0 1.5 2 0 0 2 2 2 0 AAA domain FtsK_SpoIIIE PF01580.13 gi|345005783|ref|YP_004808636.1| - 0.16 11.4 0.3 0.26 10.7 0.2 1.3 1 0 0 1 1 1 0 FtsK/SpoIIIE family MacB_PCD PF12704.2 gi|345005784|ref|YP_004808637.1| - 4.5e-27 95.1 1.5 4.5e-27 95.1 1.1 2.3 2 0 0 2 2 2 1 MacB-like periplasmic core domain FtsX PF02687.16 gi|345005784|ref|YP_004808637.1| - 1.1e-16 60.6 8.7 1.1e-16 60.6 6.0 2.2 2 0 0 2 2 2 1 FtsX-like permease family STb_secrete PF09075.5 gi|345005784|ref|YP_004808637.1| - 2.2 8.2 3.8 3.7 7.4 1.4 2.3 2 0 0 2 2 2 0 Heat-stable enterotoxin B, secretory AsnC_trans_reg PF01037.16 gi|345005785|ref|YP_004808638.1| - 1.5e-10 40.6 0.7 2.3e-10 40.0 0.5 1.3 1 0 0 1 1 1 1 AsnC family HTH_24 PF13412.1 gi|345005785|ref|YP_004808638.1| - 1.1e-07 31.1 0.0 1.9e-07 30.3 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.5 gi|345005785|ref|YP_004808638.1| - 9.3e-05 21.9 0.0 0.0003 20.3 0.0 1.9 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_20 PF12840.2 gi|345005785|ref|YP_004808638.1| - 0.00042 20.0 0.0 0.00091 18.9 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|345005785|ref|YP_004808638.1| - 0.0039 16.8 0.0 0.0085 15.7 0.0 1.7 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family GYD PF08734.6 gi|345005785|ref|YP_004808638.1| - 0.0076 15.9 0.0 0.013 15.2 0.0 1.4 1 0 0 1 1 1 1 GYD domain TrmB PF01978.14 gi|345005785|ref|YP_004808638.1| - 0.0092 15.6 0.0 0.021 14.5 0.0 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_27 PF13463.1 gi|345005785|ref|YP_004808638.1| - 0.048 14.0 0.0 0.14 12.5 0.0 1.8 2 0 0 2 2 2 0 Winged helix DNA-binding domain MarR_2 PF12802.2 gi|345005785|ref|YP_004808638.1| - 0.079 12.6 0.0 0.17 11.5 0.0 1.6 1 0 0 1 1 1 0 MarR family MaoC_dehydratas PF01575.14 gi|345005786|ref|YP_004808639.1| - 1.7e-18 66.1 0.0 2.4e-18 65.7 0.0 1.1 1 0 0 1 1 1 1 MaoC like domain MaoC_dehydrat_N PF13452.1 gi|345005786|ref|YP_004808639.1| - 6.9e-09 35.5 0.0 9.4e-09 35.1 0.0 1.2 1 0 0 1 1 1 1 N-terminal half of MaoC dehydratase FabA PF07977.8 gi|345005786|ref|YP_004808639.1| - 0.0068 15.8 0.0 0.0074 15.7 0.0 1.2 1 0 0 1 1 1 1 FabA-like domain SpoU_methylase PF00588.14 gi|345005787|ref|YP_004808640.1| - 2.7e-31 108.3 0.0 3.7e-31 107.8 0.0 1.2 1 0 0 1 1 1 1 SpoU rRNA Methylase family Abhydrolase_6 PF12697.2 gi|345005787|ref|YP_004808640.1| - 0.0074 16.1 0.1 0.025 14.4 0.0 1.7 1 1 1 2 2 2 1 Alpha/beta hydrolase family DUF2122 PF09895.4 gi|345005787|ref|YP_004808640.1| - 0.028 14.5 0.0 0.054 13.6 0.0 1.5 1 0 0 1 1 1 0 RecB-family nuclease (DUF2122) 4HBT PF03061.17 gi|345005789|ref|YP_004808642.1| - 4.8e-17 61.8 0.0 6.5e-17 61.4 0.0 1.2 1 0 0 1 1 1 1 Thioesterase superfamily 4HBT_2 PF13279.1 gi|345005789|ref|YP_004808642.1| - 0.014 15.8 0.0 0.017 15.6 0.0 1.1 1 0 0 1 1 1 0 Thioesterase-like superfamily TrkA_N PF02254.13 gi|345005790|ref|YP_004808643.1| - 1.5e-20 73.3 0.8 3e-20 72.3 0.6 1.6 1 0 0 1 1 1 1 TrkA-N domain DHH PF01368.15 gi|345005790|ref|YP_004808643.1| - 1e-10 41.3 0.1 3.6e-10 39.6 0.1 1.9 1 1 0 1 1 1 1 DHH family Saccharop_dh PF03435.13 gi|345005790|ref|YP_004808643.1| - 1.8e-06 27.1 0.7 3.1e-06 26.4 0.5 1.2 1 0 0 1 1 1 1 Saccharopine dehydrogenase ApbA PF02558.11 gi|345005790|ref|YP_004808643.1| - 6.1e-06 25.7 0.0 1.6e-05 24.4 0.0 1.8 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA F420_oxidored PF03807.12 gi|345005790|ref|YP_004808643.1| - 1e-05 25.8 0.5 4.8e-05 23.6 0.2 2.3 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent NAD_Gly3P_dh_N PF01210.18 gi|345005790|ref|YP_004808643.1| - 2.1e-05 24.2 0.0 4.3e-05 23.2 0.0 1.5 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus IlvN PF07991.7 gi|345005790|ref|YP_004808643.1| - 0.00014 21.2 0.7 0.00063 19.1 0.2 2.1 2 0 0 2 2 2 1 Acetohydroxy acid isomeroreductase, catalytic domain DHHA1 PF02272.14 gi|345005790|ref|YP_004808643.1| - 0.00018 21.1 0.0 0.00046 19.8 0.0 1.7 1 0 0 1 1 1 1 DHHA1 domain NAD_binding_2 PF03446.10 gi|345005790|ref|YP_004808643.1| - 0.00077 19.3 0.0 0.0014 18.4 0.0 1.4 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase 2-Hacid_dh_C PF02826.14 gi|345005790|ref|YP_004808643.1| - 0.0015 17.7 0.0 0.15 11.1 0.0 2.5 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain UDPG_MGDP_dh_N PF03721.9 gi|345005790|ref|YP_004808643.1| - 0.0017 17.7 0.1 0.0043 16.4 0.0 1.7 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NAD_binding_7 PF13241.1 gi|345005790|ref|YP_004808643.1| - 0.0022 18.1 1.2 0.0059 16.8 0.7 1.8 1 1 0 1 1 1 1 Putative NAD(P)-binding 3HCDH_N PF02737.13 gi|345005790|ref|YP_004808643.1| - 0.0049 16.5 0.1 0.012 15.2 0.1 1.7 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain XdhC_C PF13478.1 gi|345005790|ref|YP_004808643.1| - 0.0093 16.2 0.3 0.069 13.4 0.1 2.3 2 0 0 2 2 2 1 XdhC Rossmann domain adh_short PF00106.20 gi|345005790|ref|YP_004808643.1| - 0.016 15.1 4.0 0.8 9.6 0.1 3.1 2 1 1 3 3 3 0 short chain dehydrogenase ADH_zinc_N PF00107.21 gi|345005790|ref|YP_004808643.1| - 0.021 14.3 0.1 0.14 11.6 0.0 2.3 1 1 1 2 2 2 0 Zinc-binding dehydrogenase BMC PF00936.14 gi|345005790|ref|YP_004808643.1| - 0.073 12.7 0.2 0.19 11.4 0.1 1.7 1 0 0 1 1 1 0 BMC domain ThiF PF00899.16 gi|345005790|ref|YP_004808643.1| - 0.093 12.5 0.7 0.33 10.7 0.5 2.1 1 1 0 1 1 1 0 ThiF family NAD_binding_8 PF13450.1 gi|345005790|ref|YP_004808643.1| - 0.094 12.7 0.0 0.23 11.4 0.0 1.7 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain Creatinase_N PF01321.13 gi|345005792|ref|YP_004808645.1| - 0.088 13.3 0.0 0.19 12.2 0.0 1.5 1 0 0 1 1 1 0 Creatinase/Prolidase N-terminal domain PRC PF05239.11 gi|345005793|ref|YP_004808646.1| - 1e-13 50.9 0.7 1.2e-13 50.7 0.5 1.1 1 0 0 1 1 1 1 PRC-barrel domain DUF3315 PF11776.3 gi|345005793|ref|YP_004808646.1| - 0.044 13.3 0.2 0.08 12.4 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF3315) FAD-oxidase_C PF02913.14 gi|345005794|ref|YP_004808647.1| - 3.3e-62 210.0 0.2 2.2e-61 207.3 0.0 2.4 2 0 0 2 2 2 1 FAD linked oxidases, C-terminal domain FAD_binding_4 PF01565.18 gi|345005794|ref|YP_004808647.1| - 5.8e-40 135.9 0.2 1.4e-39 134.7 0.1 1.7 1 0 0 1 1 1 1 FAD binding domain Fer4_17 PF13534.1 gi|345005794|ref|YP_004808647.1| - 3.5e-09 36.8 3.7 8.6e-09 35.6 2.6 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|345005794|ref|YP_004808647.1| - 6e-08 32.5 4.8 1.2e-07 31.5 3.3 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain CCG PF02754.11 gi|345005794|ref|YP_004808647.1| - 2.9e-07 30.3 0.0 2.6e-05 24.1 0.0 2.9 2 0 0 2 2 2 1 Cysteine-rich domain Fer4_18 PF13746.1 gi|345005794|ref|YP_004808647.1| - 2.4e-05 24.6 1.4 0.00016 21.9 0.2 2.5 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|345005794|ref|YP_004808647.1| - 0.00014 22.0 0.5 0.0089 16.2 0.0 2.5 2 0 0 2 2 2 1 4Fe-4S dicluster domain Cytokin-bind PF09265.5 gi|345005794|ref|YP_004808647.1| - 0.0033 16.6 0.2 0.0059 15.7 0.1 1.3 1 0 0 1 1 1 1 Cytokinin dehydrogenase 1, FAD and cytokinin binding Fer4_21 PF14697.1 gi|345005794|ref|YP_004808647.1| - 0.015 15.0 3.6 0.11 12.3 0.3 2.6 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|345005794|ref|YP_004808647.1| - 0.021 15.1 5.7 0.79 10.1 4.4 2.6 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|345005794|ref|YP_004808647.1| - 0.048 14.4 1.3 0.19 12.5 0.1 2.3 2 0 0 2 2 2 0 4Fe-4S double cluster binding domain Fer4_10 PF13237.1 gi|345005794|ref|YP_004808647.1| - 0.095 12.5 9.1 0.13 12.0 1.7 2.3 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4 PF00037.22 gi|345005794|ref|YP_004808647.1| - 0.36 10.4 15.1 0.11 12.1 3.2 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Aminotran_1_2 PF00155.16 gi|345005795|ref|YP_004808648.1| - 3.8e-31 108.3 0.0 4.7e-31 108.0 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.14 gi|345005795|ref|YP_004808648.1| - 0.002 16.9 0.0 0.0031 16.3 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.16 gi|345005795|ref|YP_004808648.1| - 0.0024 17.0 0.0 0.004 16.3 0.0 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase DEAD PF00270.24 gi|345005796|ref|YP_004808649.1| - 8e-22 77.5 0.0 1.2e-21 76.9 0.0 1.3 1 0 0 1 1 1 1 DEAD/DEAH box helicase DUF1998 PF09369.5 gi|345005796|ref|YP_004808649.1| - 1.5e-17 63.8 0.0 4e-17 62.5 0.0 1.8 1 0 0 1 1 1 1 Domain of unknown function (DUF1998) Helicase_C PF00271.26 gi|345005796|ref|YP_004808649.1| - 5.4e-11 42.1 0.1 2.3e-10 40.1 0.0 2.0 2 0 0 2 2 2 1 Helicase conserved C-terminal domain GrpE PF01025.14 gi|345005797|ref|YP_004808650.1| - 3e-42 143.9 3.5 3.7e-42 143.6 2.4 1.2 1 1 0 1 1 1 1 GrpE CENP-Q PF13094.1 gi|345005797|ref|YP_004808650.1| - 0.00035 20.6 7.3 0.0005 20.1 5.1 1.3 1 0 0 1 1 1 1 CENP-Q, a CENPA-CAD centromere complex subunit IncA PF04156.9 gi|345005797|ref|YP_004808650.1| - 0.0088 15.6 3.1 0.011 15.3 2.1 1.1 1 0 0 1 1 1 1 IncA protein DUF4279 PF14106.1 gi|345005797|ref|YP_004808650.1| - 0.022 14.6 2.0 3.4 7.5 0.3 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF4279) DUF1423 PF07227.6 gi|345005797|ref|YP_004808650.1| - 0.038 12.6 5.1 0.047 12.3 3.5 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1423) Spc7 PF08317.6 gi|345005797|ref|YP_004808650.1| - 0.07 11.7 2.8 0.085 11.5 1.9 1.1 1 0 0 1 1 1 0 Spc7 kinetochore protein DUF848 PF05852.6 gi|345005797|ref|YP_004808650.1| - 0.09 12.6 3.9 0.16 11.8 2.7 1.5 1 0 0 1 1 1 0 Gammaherpesvirus protein of unknown function (DUF848) AAA_13 PF13166.1 gi|345005797|ref|YP_004808650.1| - 0.092 11.2 2.1 0.11 10.9 1.5 1.1 1 0 0 1 1 1 0 AAA domain DUF3584 PF12128.3 gi|345005797|ref|YP_004808650.1| - 0.14 9.4 6.4 0.15 9.3 4.4 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) OmpH PF03938.9 gi|345005797|ref|YP_004808650.1| - 0.18 11.7 6.0 0.28 11.1 4.2 1.3 1 0 0 1 1 1 0 Outer membrane protein (OmpH-like) Prefoldin_2 PF01920.15 gi|345005797|ref|YP_004808650.1| - 0.39 10.5 6.7 0.52 10.0 4.0 1.7 2 0 0 2 2 2 0 Prefoldin subunit Bap31 PF05529.7 gi|345005797|ref|YP_004808650.1| - 1.1 8.7 4.0 1.6 8.1 2.8 1.3 1 0 0 1 1 1 0 B-cell receptor-associated protein 31-like APG6 PF04111.7 gi|345005797|ref|YP_004808650.1| - 2.1 7.3 6.7 2.8 6.9 4.6 1.2 1 0 0 1 1 1 0 Autophagy protein Apg6 TarH PF02203.10 gi|345005797|ref|YP_004808650.1| - 2.4 7.9 7.5 18 5.0 5.2 2.2 1 1 0 1 1 1 0 Tar ligand binding domain homologue HSP70 PF00012.15 gi|345005798|ref|YP_004808651.1| - 9.4e-238 790.0 18.4 1.9e-207 689.9 10.2 2.0 1 1 1 2 2 2 2 Hsp70 protein MreB_Mbl PF06723.8 gi|345005798|ref|YP_004808651.1| - 1.9e-18 66.1 0.2 1.9e-18 66.1 0.2 2.3 2 0 0 2 2 2 1 MreB/Mbl protein StbA PF06406.6 gi|345005798|ref|YP_004808651.1| - 0.0042 16.0 0.0 0.018 13.9 0.0 2.0 2 0 0 2 2 2 1 StbA protein FtsA PF14450.1 gi|345005798|ref|YP_004808651.1| - 0.055 13.3 1.5 1.9 8.3 0.0 3.4 2 1 0 2 2 2 0 Cell division protein FtsA PhyH PF05721.8 gi|345005798|ref|YP_004808651.1| - 0.7 9.8 3.7 1.6 8.7 0.9 2.3 2 0 0 2 2 2 0 Phytanoyl-CoA dioxygenase (PhyH) DUF2937 PF11157.3 gi|345005798|ref|YP_004808651.1| - 2.7 7.2 6.6 1 8.6 1.8 2.3 2 1 1 3 3 3 0 Protein of unknown function (DUF2937) Hydantoinase_A PF01968.13 gi|345005798|ref|YP_004808651.1| - 9.7 5.1 11.7 0.2 10.7 0.1 3.3 4 0 0 4 4 4 0 Hydantoinase/oxoprolinase CTDII PF01556.13 gi|345005799|ref|YP_004808652.1| - 3.5e-32 110.1 0.0 1.1e-22 79.6 0.0 2.4 2 0 0 2 2 2 2 DnaJ C terminal domain DnaJ PF00226.26 gi|345005799|ref|YP_004808652.1| - 2.6e-22 78.3 3.3 2.6e-22 78.3 2.3 1.8 2 0 0 2 2 2 1 DnaJ domain DnaJ_CXXCXGXG PF00684.14 gi|345005799|ref|YP_004808652.1| - 1.7e-14 53.5 19.6 3.1e-14 52.7 13.6 1.4 1 0 0 1 1 1 1 DnaJ central domain RPT PF13446.1 gi|345005799|ref|YP_004808652.1| - 0.0042 16.4 0.3 0.01 15.2 0.2 1.6 1 0 0 1 1 1 1 A repeated domain in UCH-protein DZR PF12773.2 gi|345005799|ref|YP_004808652.1| - 4 7.3 13.0 18 5.2 9.0 2.0 1 1 0 1 1 1 0 Double zinc ribbon AMP-binding PF00501.23 gi|345005800|ref|YP_004808653.1| - 7.4e-09 34.4 0.1 6.5e-08 31.3 0.0 1.9 1 1 1 2 2 2 2 AMP-binding enzyme AMP-binding PF00501.23 gi|345005801|ref|YP_004808654.1| - 9.1e-81 271.3 0.0 1.1e-80 271.0 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|345005801|ref|YP_004808654.1| - 6.8e-18 65.3 0.1 1.3e-17 64.4 0.1 1.5 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain Acetyltransf_3 PF13302.1 gi|345005802|ref|YP_004808655.1| - 3.2e-10 40.3 0.0 4.1e-10 39.9 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|345005802|ref|YP_004808655.1| - 0.00015 21.7 0.1 0.00022 21.1 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family FR47 PF08445.5 gi|345005802|ref|YP_004808655.1| - 0.0045 16.7 0.0 0.0067 16.1 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_4 PF13420.1 gi|345005802|ref|YP_004808655.1| - 0.046 13.6 0.0 0.057 13.3 0.0 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain DNA_topoisoIV PF00521.15 gi|345005803|ref|YP_004808656.1| - 5e-150 500.0 0.0 7e-150 499.5 0.0 1.2 1 0 0 1 1 1 1 DNA gyrase/topoisomerase IV, subunit A DNA_gyraseA_C PF03989.8 gi|345005803|ref|YP_004808656.1| - 2.8e-65 215.4 8.5 1.5e-11 43.4 0.2 6.4 6 0 0 6 6 6 6 DNA gyrase C-terminal domain, beta-propeller DNA_gyraseB PF00204.20 gi|345005804|ref|YP_004808657.1| - 2.9e-59 199.1 4.3 4e-59 198.7 0.1 2.4 2 0 0 2 2 2 1 DNA gyrase B DNA_gyraseB_C PF00986.16 gi|345005804|ref|YP_004808657.1| - 1.7e-29 101.3 0.0 4.6e-29 99.9 0.0 1.7 1 0 0 1 1 1 1 DNA gyrase B subunit, carboxyl terminus Toprim PF01751.17 gi|345005804|ref|YP_004808657.1| - 2.9e-21 75.3 0.2 3.7e-20 71.7 0.0 2.7 3 0 0 3 3 3 1 Toprim domain HATPase_c PF02518.21 gi|345005804|ref|YP_004808657.1| - 4.9e-20 71.3 0.1 1.3e-19 69.9 0.0 1.8 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_3 PF13589.1 gi|345005804|ref|YP_004808657.1| - 0.00016 21.3 0.0 0.00047 19.8 0.0 1.8 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PT-HINT PF07591.6 gi|345005804|ref|YP_004808657.1| - 0.0054 16.6 0.0 0.46 10.3 0.0 2.6 2 0 0 2 2 2 1 Pretoxin HINT domain HNH_3 PF13392.1 gi|345005804|ref|YP_004808657.1| - 0.0066 15.8 2.8 0.0066 15.8 1.9 1.7 2 0 0 2 2 2 1 HNH endonuclease Hint PF01079.15 gi|345005804|ref|YP_004808657.1| - 0.055 12.6 0.0 0.15 11.2 0.0 1.7 1 1 0 1 1 1 0 Hint module Prismane PF03063.15 gi|345005804|ref|YP_004808657.1| - 6.1 5.1 5.7 7.1 4.8 2.3 1.9 2 0 0 2 2 2 0 Prismane/CO dehydrogenase family Topo-VIb_trans PF09239.6 gi|345005805|ref|YP_004808658.1| - 7.8e-64 214.0 0.0 1.5e-63 213.0 0.0 1.5 1 0 0 1 1 1 1 Topoisomerase VI B subunit, transducer HATPase_c PF02518.21 gi|345005805|ref|YP_004808658.1| - 1.7e-13 50.2 0.0 2.2e-11 43.4 0.0 3.4 4 0 0 4 4 4 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_3 PF13589.1 gi|345005805|ref|YP_004808658.1| - 1.1e-09 38.0 0.1 4.3e-06 26.4 0.0 2.9 3 0 0 3 3 3 2 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Intein_splicing PF14890.1 gi|345005805|ref|YP_004808658.1| - 0.00016 20.6 0.0 0.0015 17.4 0.0 2.4 1 1 0 1 1 1 1 Intein splicing domain Hint PF01079.15 gi|345005805|ref|YP_004808658.1| - 0.0074 15.5 0.0 0.015 14.5 0.0 1.4 1 0 0 1 1 1 1 Hint module LAGLIDADG_3 PF14528.1 gi|345005805|ref|YP_004808658.1| - 0.011 15.9 0.0 0.056 13.6 0.0 2.2 2 0 0 2 2 2 0 LAGLIDADG-like domain HATPase_c_2 PF13581.1 gi|345005805|ref|YP_004808658.1| - 0.012 15.3 0.0 0.091 12.5 0.0 2.3 2 0 0 2 2 2 0 Histidine kinase-like ATPase domain TP6A_N PF04406.9 gi|345005806|ref|YP_004808659.1| - 6e-20 70.6 0.0 9.7e-20 70.0 0.0 1.3 1 0 0 1 1 1 1 Type IIB DNA topoisomerase Beta-lactamase PF00144.19 gi|345005807|ref|YP_004808660.1| - 5.7e-12 45.2 0.0 1.1e-11 44.3 0.0 1.4 1 1 0 1 1 1 1 Beta-lactamase PNP_UDP_1 PF01048.15 gi|345005808|ref|YP_004808661.1| - 1.1e-44 152.1 3.1 1.4e-44 151.8 2.2 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily Pyr_redox_2 PF07992.9 gi|345005809|ref|YP_004808662.1| - 4.6e-15 56.0 0.0 9.8e-15 54.9 0.0 1.8 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|345005809|ref|YP_004808662.1| - 4.6e-08 33.3 1.5 1.1e-05 25.7 0.1 2.6 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.1 gi|345005809|ref|YP_004808662.1| - 0.00014 21.6 0.2 3.2 7.5 0.0 3.5 4 0 0 4 4 4 2 FAD-NAD(P)-binding Pyr_redox_3 PF13738.1 gi|345005809|ref|YP_004808662.1| - 0.005 16.9 0.6 0.28 11.2 0.0 2.3 1 1 1 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase AlaDh_PNT_C PF01262.16 gi|345005809|ref|YP_004808662.1| - 0.19 11.3 1.1 1.4 8.4 0.1 2.2 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain Arginase PF00491.16 gi|345005810|ref|YP_004808663.1| - 7e-75 251.8 2.4 8.3e-75 251.6 1.7 1.0 1 0 0 1 1 1 1 Arginase family Creatininase PF02633.9 gi|345005811|ref|YP_004808664.1| - 1e-62 211.3 3.3 1.2e-62 211.1 2.3 1.0 1 0 0 1 1 1 1 Creatinine amidohydrolase M20_dimer PF07687.9 gi|345005812|ref|YP_004808665.1| - 7.6e-08 32.0 0.0 2.3e-07 30.5 0.0 1.8 1 0 0 1 1 1 1 Peptidase dimerisation domain Peptidase_M20 PF01546.23 gi|345005812|ref|YP_004808665.1| - 0.00074 19.0 4.5 0.0012 18.4 3.1 1.4 1 1 0 1 1 1 1 Peptidase family M20/M25/M40 Cytidylate_kin2 PF13189.1 gi|345005813|ref|YP_004808666.1| - 0.13 12.1 0.0 0.18 11.6 0.0 1.4 1 1 0 1 1 1 0 Cytidylate kinase-like family Phage_integrase PF00589.17 gi|345005814|ref|YP_004808667.1| - 2.9e-18 66.1 0.0 6.2e-18 65.0 0.0 1.5 1 1 0 1 1 1 1 Phage integrase family Phage_int_SAM_1 PF02899.12 gi|345005814|ref|YP_004808667.1| - 1.2e-06 28.5 0.0 5.3e-06 26.4 0.0 2.1 2 0 0 2 2 2 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_4 PF13495.1 gi|345005814|ref|YP_004808667.1| - 2.6e-05 24.4 0.0 0.00065 19.9 0.0 2.8 2 1 1 3 3 3 2 Phage integrase, N-terminal SAM-like domain PALP PF00291.20 gi|345005815|ref|YP_004808668.1| - 7.7e-75 251.9 10.2 9.2e-75 251.6 7.0 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme ACT PF01842.20 gi|345005815|ref|YP_004808668.1| - 3.9e-09 35.8 0.4 1.2e-08 34.2 0.3 1.9 1 0 0 1 1 1 1 ACT domain ACT_4 PF13291.1 gi|345005815|ref|YP_004808668.1| - 4e-06 27.0 0.2 1.4e-05 25.3 0.0 2.1 2 0 0 2 2 2 1 ACT domain ABC_tran PF00005.22 gi|345005816|ref|YP_004808669.1| - 1.3e-33 116.1 0.0 4.3e-33 114.5 0.0 1.8 2 1 0 2 2 2 1 ABC transporter oligo_HPY PF08352.7 gi|345005816|ref|YP_004808669.1| - 7.9e-16 58.1 0.1 1.5e-15 57.3 0.1 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|345005816|ref|YP_004808669.1| - 6.3e-09 36.1 0.1 9.4e-06 25.7 0.0 2.1 1 1 1 2 2 2 2 AAA domain AAA_22 PF13401.1 gi|345005816|ref|YP_004808669.1| - 0.00033 20.7 0.1 0.0013 18.8 0.0 2.0 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|345005816|ref|YP_004808669.1| - 0.0041 16.3 0.0 0.0092 15.2 0.0 1.5 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA PF00004.24 gi|345005816|ref|YP_004808669.1| - 0.011 15.9 0.0 0.034 14.3 0.0 1.8 2 0 0 2 2 1 0 ATPase family associated with various cellular activities (AAA) DUF258 PF03193.11 gi|345005816|ref|YP_004808669.1| - 0.012 14.8 0.2 0.021 14.0 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_16 PF13191.1 gi|345005816|ref|YP_004808669.1| - 0.023 14.7 2.8 0.029 14.3 0.2 2.2 2 1 0 2 2 2 0 AAA ATPase domain Sigma54_activat PF00158.21 gi|345005816|ref|YP_004808669.1| - 0.025 14.0 0.1 5.8 6.3 0.0 2.3 2 0 0 2 2 2 0 Sigma-54 interaction domain NB-ARC PF00931.17 gi|345005816|ref|YP_004808669.1| - 0.034 12.9 0.3 0.07 11.9 0.1 1.5 2 0 0 2 2 2 0 NB-ARC domain ORF11CD3 PF10549.4 gi|345005816|ref|YP_004808669.1| - 0.035 13.8 0.1 0.082 12.6 0.0 1.6 2 0 0 2 2 1 0 ORF11CD3 domain ATP-synt_ab PF00006.20 gi|345005816|ref|YP_004808669.1| - 0.039 13.4 0.0 0.047 13.1 0.0 1.3 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain SbcCD_C PF13558.1 gi|345005816|ref|YP_004808669.1| - 0.076 12.9 0.1 0.53 10.2 0.1 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit Mg_chelatase PF01078.16 gi|345005816|ref|YP_004808669.1| - 0.082 12.0 0.0 0.15 11.1 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_29 PF13555.1 gi|345005816|ref|YP_004808669.1| - 0.093 12.2 0.2 0.2 11.2 0.1 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_10 PF12846.2 gi|345005816|ref|YP_004808669.1| - 0.13 11.7 0.0 6 6.2 0.0 2.3 2 0 0 2 2 2 0 AAA-like domain AAA_13 PF13166.1 gi|345005816|ref|YP_004808669.1| - 0.14 10.6 0.0 9.2 4.5 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_18 PF13238.1 gi|345005816|ref|YP_004808669.1| - 0.14 12.4 0.9 0.34 11.2 0.1 2.1 3 1 0 3 3 1 0 AAA domain NACHT PF05729.7 gi|345005816|ref|YP_004808669.1| - 0.21 11.2 0.6 0.45 10.1 0.1 1.7 2 0 0 2 2 2 0 NACHT domain ABC_tran PF00005.22 gi|345005817|ref|YP_004808670.1| - 1.7e-27 96.4 0.0 2.4e-27 95.9 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|345005817|ref|YP_004808670.1| - 2.8e-18 66.0 0.3 4.9e-18 65.2 0.2 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|345005817|ref|YP_004808670.1| - 1.1e-08 35.3 0.0 5.6e-07 29.7 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA PF00004.24 gi|345005817|ref|YP_004808670.1| - 0.00039 20.6 0.0 0.053 13.7 0.0 2.3 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) SMC_N PF02463.14 gi|345005817|ref|YP_004808670.1| - 0.00043 19.5 0.0 0.00096 18.4 0.0 1.5 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.1 gi|345005817|ref|YP_004808670.1| - 0.0016 18.5 0.2 0.035 14.2 0.1 2.1 1 1 0 1 1 1 1 AAA domain AAA_10 PF12846.2 gi|345005817|ref|YP_004808670.1| - 0.0068 15.8 0.4 0.61 9.4 0.2 2.2 1 1 1 2 2 2 1 AAA-like domain AAA_16 PF13191.1 gi|345005817|ref|YP_004808670.1| - 0.025 14.5 0.9 0.063 13.2 0.7 1.7 1 1 0 1 1 1 0 AAA ATPase domain AAA_29 PF13555.1 gi|345005817|ref|YP_004808670.1| - 0.026 14.0 0.1 0.045 13.2 0.0 1.3 1 0 0 1 1 1 0 P-loop containing region of AAA domain T2SE PF00437.15 gi|345005817|ref|YP_004808670.1| - 0.098 11.5 0.0 11 4.8 0.0 2.3 2 0 0 2 2 2 0 Type II/IV secretion system protein BPD_transp_1 PF00528.17 gi|345005818|ref|YP_004808671.1| - 2.9e-19 69.3 4.9 2.9e-19 69.3 3.4 3.0 2 1 2 4 4 4 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.2 gi|345005818|ref|YP_004808671.1| - 7.8e-05 21.9 2.9 0.00012 21.3 0.0 2.8 3 0 0 3 3 3 1 N-terminal TM domain of oligopeptide transport permease C BPD_transp_1 PF00528.17 gi|345005819|ref|YP_004808672.1| - 3.7e-33 114.6 9.9 3.7e-33 114.6 6.9 2.1 2 0 0 2 2 2 2 Binding-protein-dependent transport system inner membrane component SBP_bac_5 PF00496.17 gi|345005820|ref|YP_004808673.1| - 3.3e-61 207.1 2.9 4.9e-61 206.6 2.0 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle TAT_signal PF10518.4 gi|345005820|ref|YP_004808673.1| - 0.095 12.7 2.9 0.28 11.2 2.0 1.8 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Metallophos_2 PF12850.2 gi|345005821|ref|YP_004808674.1| - 1.5e-13 50.9 0.1 2.2e-13 50.3 0.0 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|345005821|ref|YP_004808674.1| - 2.3e-08 33.6 2.3 3.5e-08 33.0 1.6 1.3 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase tRNA_Me_trans PF03054.11 gi|345005821|ref|YP_004808674.1| - 0.15 10.5 0.0 0.22 10.0 0.0 1.1 1 0 0 1 1 1 0 tRNA methyl transferase PfkB PF00294.19 gi|345005822|ref|YP_004808675.1| - 3e-39 134.9 1.7 3.7e-39 134.6 1.2 1.1 1 0 0 1 1 1 1 pfkB family carbohydrate kinase BtpA PF03437.10 gi|345005823|ref|YP_004808676.1| - 6.6e-80 268.0 0.5 7.5e-80 267.8 0.3 1.0 1 0 0 1 1 1 1 BtpA family Trp_syntA PF00290.15 gi|345005823|ref|YP_004808676.1| - 0.0013 17.3 0.1 0.0022 16.5 0.1 1.3 1 0 0 1 1 1 1 Tryptophan synthase alpha chain PRAI PF00697.17 gi|345005823|ref|YP_004808676.1| - 0.02 14.4 0.1 0.037 13.5 0.0 1.5 1 0 0 1 1 1 0 N-(5'phosphoribosyl)anthranilate (PRA) isomerase HisG PF01634.13 gi|345005825|ref|YP_004808678.1| - 0.016 14.7 0.0 0.068 12.7 0.0 1.7 1 1 1 2 2 2 0 ATP phosphoribosyltransferase DUF3273 PF11677.3 gi|345005826|ref|YP_004808679.1| - 0.0021 17.3 0.2 0.0021 17.3 0.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3273) DUF3096 PF11295.3 gi|345005826|ref|YP_004808679.1| - 0.089 12.3 0.5 0.089 12.3 0.3 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF3096) TctB PF07331.6 gi|345005826|ref|YP_004808679.1| - 0.55 9.8 5.2 0.77 9.4 3.6 1.2 1 0 0 1 1 1 0 Tripartite tricarboxylate transporter TctB family DUF1228 PF06779.9 gi|345005827|ref|YP_004808680.1| - 0.12 12.4 0.0 0.16 12.0 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1228) Zn_Tnp_IS1 PF03811.8 gi|345005828|ref|YP_004808681.1| - 0.19 11.2 0.8 0.39 10.2 0.4 1.6 1 1 0 1 1 1 0 InsA N-terminal domain Lactamase_B_2 PF12706.2 gi|345005829|ref|YP_004808682.1| - 1.4e-18 67.1 0.1 1.9e-18 66.6 0.1 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.1 gi|345005829|ref|YP_004808682.1| - 1.1e-12 47.9 0.0 1.5e-12 47.5 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|345005829|ref|YP_004808682.1| - 0.00011 21.9 5.7 0.00083 19.0 4.0 2.3 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily MS_channel PF00924.13 gi|345005831|ref|YP_004808684.1| - 2.4e-24 85.8 2.4 2.4e-24 85.8 1.7 2.3 2 1 0 2 2 2 1 Mechanosensitive ion channel PTS_EIIC_2 PF13303.1 gi|345005831|ref|YP_004808684.1| - 0.19 10.5 8.8 0.085 11.6 2.0 2.0 2 0 0 2 2 2 0 Phosphotransferase system, EIIC EIID-AGA PF03613.9 gi|345005831|ref|YP_004808684.1| - 0.24 10.3 3.5 2.3 7.0 2.4 2.0 1 1 0 1 1 1 0 PTS system mannose/fructose/sorbose family IID component DUF3040 PF11239.3 gi|345005831|ref|YP_004808684.1| - 0.34 11.0 4.5 0.37 10.8 1.8 2.2 1 1 0 1 1 1 0 Protein of unknown function (DUF3040) OGG_N PF07934.7 gi|345005832|ref|YP_004808685.1| - 1.2e-16 60.7 0.0 2.2e-16 59.8 0.0 1.5 1 0 0 1 1 1 1 8-oxoguanine DNA glycosylase, N-terminal domain HhH-GPD PF00730.20 gi|345005832|ref|YP_004808685.1| - 3.8e-14 52.8 0.0 5.1e-14 52.4 0.0 1.2 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein AAA_27 PF13514.1 gi|345005834|ref|YP_004808687.1| - 2.5e-24 85.1 68.9 5.1e-24 84.1 24.8 3.3 3 1 0 3 3 3 2 AAA domain AAA_23 PF13476.1 gi|345005834|ref|YP_004808687.1| - 9.1e-09 35.9 8.4 9.1e-09 35.9 5.8 4.1 2 2 0 2 2 2 1 AAA domain AAA_21 PF13304.1 gi|345005834|ref|YP_004808687.1| - 0.00015 21.8 0.0 0.0031 17.5 0.0 2.3 2 0 0 2 2 2 1 AAA domain Erp_C PF06780.6 gi|345005834|ref|YP_004808687.1| - 0.0042 16.9 0.7 0.0042 16.9 0.5 4.5 4 1 0 4 4 4 1 Erp protein C-terminus DUF1282 PF06930.7 gi|345005834|ref|YP_004808687.1| - 0.11 12.0 0.5 0.19 11.3 0.3 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1282) AAA_22 PF13401.1 gi|345005834|ref|YP_004808687.1| - 0.3 11.2 5.4 6 7.0 0.0 4.6 3 1 1 4 4 4 0 AAA domain DUF310 PF03750.8 gi|345005834|ref|YP_004808687.1| - 0.42 10.8 4.1 0.31 11.2 0.8 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF310) SMC_N PF02463.14 gi|345005834|ref|YP_004808687.1| - 0.61 9.2 0.0 0.61 9.2 0.0 2.4 2 1 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_17 PF13207.1 gi|345005834|ref|YP_004808687.1| - 2.1 9.2 9.8 0.18 12.6 0.1 3.7 2 2 0 2 2 2 0 AAA domain Metallophos_2 PF12850.2 gi|345005835|ref|YP_004808688.1| - 7.8e-13 48.5 0.0 1.3e-12 47.8 0.0 1.4 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|345005835|ref|YP_004808688.1| - 6.8e-10 38.6 2.9 1.4e-09 37.6 2.0 1.5 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase PGA_cap PF09587.5 gi|345005835|ref|YP_004808688.1| - 0.025 13.9 0.0 0.032 13.6 0.0 1.3 1 0 0 1 1 1 0 Bacterial capsule synthesis protein PGA_cap Peptidase_S9 PF00326.16 gi|345005836|ref|YP_004808689.1| - 2.7e-48 164.0 0.1 4.2e-48 163.3 0.1 1.3 1 0 0 1 1 1 1 Prolyl oligopeptidase family Abhydrolase_5 PF12695.2 gi|345005836|ref|YP_004808689.1| - 9.2e-11 41.6 1.0 2.1e-10 40.5 0.5 1.7 2 0 0 2 2 2 1 Alpha/beta hydrolase family DLH PF01738.13 gi|345005836|ref|YP_004808689.1| - 1.5e-07 30.9 1.7 3.9e-07 29.5 1.2 1.6 1 1 0 1 1 1 1 Dienelactone hydrolase family Peptidase_S15 PF02129.13 gi|345005836|ref|YP_004808689.1| - 1.5e-05 24.5 0.0 0.2 11.0 0.2 2.2 1 1 1 2 2 2 2 X-Pro dipeptidyl-peptidase (S15 family) Esterase_phd PF10503.4 gi|345005836|ref|YP_004808689.1| - 3.8e-05 23.0 4.8 0.00011 21.5 3.3 1.7 1 1 0 1 1 1 1 Esterase PHB depolymerase PD40 PF07676.7 gi|345005836|ref|YP_004808689.1| - 0.0004 19.9 0.1 2.8 7.7 0.0 4.9 6 0 0 6 6 6 1 WD40-like Beta Propeller Repeat Abhydrolase_3 PF07859.8 gi|345005836|ref|YP_004808689.1| - 0.0025 17.4 0.8 0.0077 15.8 0.5 1.8 1 1 0 1 1 1 1 alpha/beta hydrolase fold Esterase PF00756.15 gi|345005836|ref|YP_004808689.1| - 0.08 12.3 0.0 0.26 10.6 0.0 1.9 2 0 0 2 2 2 0 Putative esterase Abhydrolase_4 PF08386.5 gi|345005836|ref|YP_004808689.1| - 0.091 12.6 0.0 0.23 11.3 0.0 1.6 1 0 0 1 1 1 0 TAP-like protein AXE1 PF05448.7 gi|345005836|ref|YP_004808689.1| - 0.18 10.2 0.2 1.3 7.4 0.2 2.0 1 1 0 1 1 1 0 Acetyl xylan esterase (AXE1) Iron_transport PF10634.4 gi|345005837|ref|YP_004808690.1| - 3.2e-06 27.1 0.0 7.2e-05 22.7 0.0 2.5 3 0 0 3 3 3 1 Fe2+ transport protein TAT_signal PF10518.4 gi|345005837|ref|YP_004808690.1| - 0.0062 16.4 3.7 0.0062 16.4 2.6 2.6 2 0 0 2 2 2 1 TAT (twin-arginine translocation) pathway signal sequence YtkA PF13115.1 gi|345005837|ref|YP_004808690.1| - 0.0073 16.6 0.0 2.9 8.3 0.0 3.0 2 0 0 2 2 2 2 YtkA-like TAT_signal PF10518.4 gi|345005838|ref|YP_004808691.1| - 0.049 13.6 0.5 0.098 12.7 0.4 1.5 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence MarR_2 PF12802.2 gi|345005839|ref|YP_004808692.1| - 2.4e-14 52.7 3.9 8e-09 35.0 0.3 2.7 2 1 1 3 3 3 2 MarR family HTH_20 PF12840.2 gi|345005839|ref|YP_004808692.1| - 5.9e-14 51.6 7.5 1.9e-07 30.7 2.2 2.3 2 0 0 2 2 2 2 Helix-turn-helix domain HTH_5 PF01022.15 gi|345005839|ref|YP_004808692.1| - 8.7e-12 44.5 1.0 7.3e-08 31.9 0.3 2.2 2 0 0 2 2 2 2 Bacterial regulatory protein, arsR family HTH_24 PF13412.1 gi|345005839|ref|YP_004808692.1| - 1.2e-11 43.7 0.1 6.3e-05 22.2 0.2 2.3 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding TrmB PF01978.14 gi|345005839|ref|YP_004808692.1| - 1.1e-06 28.2 0.0 0.002 17.8 0.0 2.2 2 0 0 2 2 2 2 Sugar-specific transcriptional regulator TrmB MarR PF01047.17 gi|345005839|ref|YP_004808692.1| - 3.8e-06 26.4 0.0 0.0016 18.0 0.0 2.3 2 0 0 2 2 2 2 MarR family HTH_10 PF04967.7 gi|345005839|ref|YP_004808692.1| - 1.5e-05 24.5 0.4 0.12 12.0 0.0 3.2 3 0 0 3 3 3 1 HTH DNA binding domain HTH_27 PF13463.1 gi|345005839|ref|YP_004808692.1| - 0.00022 21.5 0.6 0.0049 17.1 0.1 2.4 2 1 0 2 2 2 1 Winged helix DNA-binding domain Rrf2 PF02082.15 gi|345005839|ref|YP_004808692.1| - 0.001 19.1 0.1 0.0067 16.5 0.0 1.9 2 0 0 2 2 2 1 Transcriptional regulator HTH_29 PF13551.1 gi|345005839|ref|YP_004808692.1| - 0.0013 18.8 0.7 1.3 9.1 0.1 2.2 1 1 1 2 2 2 2 Winged helix-turn helix HTH_IclR PF09339.5 gi|345005839|ref|YP_004808692.1| - 0.0014 18.1 6.9 0.047 13.2 0.8 2.8 3 0 0 3 3 3 2 IclR helix-turn-helix domain DUF2513 PF10711.4 gi|345005839|ref|YP_004808692.1| - 0.0021 18.1 0.0 0.2 11.7 0.0 2.1 2 0 0 2 2 2 1 Hypothetical protein (DUF2513) HTH_28 PF13518.1 gi|345005839|ref|YP_004808692.1| - 0.0029 17.5 0.3 2.3 8.2 0.0 2.4 2 0 0 2 2 2 2 Helix-turn-helix domain HTH_34 PF13601.1 gi|345005839|ref|YP_004808692.1| - 0.0058 16.6 0.0 0.2 11.6 0.0 2.1 2 0 0 2 2 2 1 Winged helix DNA-binding domain Penicillinase_R PF03965.11 gi|345005839|ref|YP_004808692.1| - 0.049 13.7 0.0 1.8 8.6 0.0 2.1 1 1 1 2 2 2 0 Penicillinase repressor RP-C PF03428.8 gi|345005839|ref|YP_004808692.1| - 0.28 10.6 0.1 0.28 10.6 0.0 1.8 3 0 0 3 3 3 0 Replication protein C N-terminal domain DUF3392 PF11872.3 gi|345005840|ref|YP_004808693.1| - 0.089 12.7 1.2 0.12 12.3 0.8 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3392) DUF3311 PF11755.3 gi|345005840|ref|YP_004808693.1| - 0.14 11.7 1.6 1.2 8.7 0.0 2.5 2 1 1 3 3 3 0 Protein of unknown function (DUF3311) BPD_transp_2 PF02653.11 gi|345005840|ref|YP_004808693.1| - 0.21 10.4 9.6 0.37 9.7 6.7 1.4 1 1 0 1 1 1 0 Branched-chain amino acid transport system / permease component GRA6 PF05084.8 gi|345005840|ref|YP_004808693.1| - 0.25 10.8 1.7 10 5.5 0.0 2.1 2 0 0 2 2 2 0 Granule antigen protein (GRA6) Claudin_2 PF13903.1 gi|345005840|ref|YP_004808693.1| - 2 8.0 7.3 3.2 7.4 5.1 1.3 1 1 0 1 1 1 0 PMP-22/EMP/MP20/Claudin tight junction DUF3357 PF11837.3 gi|345005840|ref|YP_004808693.1| - 2.6 7.9 5.5 23 4.9 0.4 2.9 1 1 1 2 2 2 0 Domain of unknown function (DUF3357) FAD_binding_5 PF00941.16 gi|345005841|ref|YP_004808694.1| - 1.6e-42 144.8 0.0 2.2e-42 144.4 0.0 1.2 1 0 0 1 1 1 1 FAD binding domain in molybdopterin dehydrogenase CO_deh_flav_C PF03450.12 gi|345005841|ref|YP_004808694.1| - 4.3e-09 36.2 0.7 1.1e-08 34.9 0.5 1.8 1 0 0 1 1 1 1 CO dehydrogenase flavoprotein C-terminal domain FAD_binding_4 PF01565.18 gi|345005841|ref|YP_004808694.1| - 0.00095 18.6 1.6 0.033 13.6 0.7 2.6 2 1 0 2 2 2 1 FAD binding domain HTH_29 PF13551.1 gi|345005842|ref|YP_004808695.1| - 4.7e-24 84.6 1.4 3.1e-23 82.0 0.2 2.2 2 0 0 2 2 2 1 Winged helix-turn helix DDE_3 PF13358.1 gi|345005842|ref|YP_004808695.1| - 7.6e-18 64.6 0.2 1.6e-17 63.6 0.0 1.6 2 0 0 2 2 2 1 DDE superfamily endonuclease HTH_23 PF13384.1 gi|345005842|ref|YP_004808695.1| - 2.5e-12 46.0 1.3 4e-11 42.1 0.2 2.9 3 0 0 3 3 3 1 Homeodomain-like domain HTH_32 PF13565.1 gi|345005842|ref|YP_004808695.1| - 6e-12 46.1 0.5 2.2e-11 44.3 0.3 2.0 1 0 0 1 1 1 1 Homeodomain-like domain HTH_28 PF13518.1 gi|345005842|ref|YP_004808695.1| - 4.6e-05 23.3 0.2 0.00029 20.7 0.0 2.2 2 0 0 2 2 2 1 Helix-turn-helix domain rve PF00665.21 gi|345005842|ref|YP_004808695.1| - 0.014 15.4 0.0 0.026 14.6 0.0 1.5 1 0 0 1 1 1 0 Integrase core domain HTH_Tnp_Tc3_2 PF01498.13 gi|345005842|ref|YP_004808695.1| - 0.083 12.9 0.3 0.21 11.6 0.0 1.8 2 0 0 2 2 2 0 Transposase Strep_his_triad PF04270.8 gi|345005843|ref|YP_004808696.1| - 0.14 11.9 0.0 0.34 10.6 0.0 1.7 2 0 0 2 2 2 0 Streptococcal histidine triad protein HATPase_c PF02518.21 gi|345005845|ref|YP_004808698.1| - 2.4e-19 69.0 0.2 4.7e-19 68.1 0.2 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.20 gi|345005845|ref|YP_004808698.1| - 2.2e-12 46.7 0.5 2.2e-12 46.7 0.3 3.0 3 0 0 3 3 3 1 His Kinase A (phospho-acceptor) domain GAF_3 PF13492.1 gi|345005845|ref|YP_004808698.1| - 7e-10 39.1 0.2 1.9e-08 34.4 0.0 2.4 2 0 0 2 2 2 1 GAF domain GAF PF01590.21 gi|345005845|ref|YP_004808698.1| - 1e-09 38.7 0.2 3.6e-09 36.9 0.0 2.0 2 0 0 2 2 2 1 GAF domain PAS_4 PF08448.5 gi|345005845|ref|YP_004808698.1| - 3.5e-08 33.4 0.1 7.7e-08 32.3 0.0 1.6 1 0 0 1 1 1 1 PAS fold PAS PF00989.19 gi|345005845|ref|YP_004808698.1| - 5.8e-07 29.2 0.0 1.1e-05 25.1 0.0 2.5 2 0 0 2 2 2 1 PAS fold PAS_9 PF13426.1 gi|345005845|ref|YP_004808698.1| - 1.6e-06 28.3 0.0 4.4e-06 27.0 0.0 1.8 1 0 0 1 1 1 1 PAS domain GAF_2 PF13185.1 gi|345005845|ref|YP_004808698.1| - 6.3e-06 26.7 0.4 2.2e-05 24.9 0.0 2.1 2 0 0 2 2 2 1 GAF domain PAS_8 PF13188.1 gi|345005845|ref|YP_004808698.1| - 0.003 17.3 0.5 0.014 15.2 0.0 2.3 2 0 0 2 2 2 1 PAS domain HATPase_c_3 PF13589.1 gi|345005845|ref|YP_004808698.1| - 0.0062 16.1 0.1 0.012 15.2 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MTBP_N PF14918.1 gi|345005845|ref|YP_004808698.1| - 0.11 11.8 0.0 0.22 10.9 0.0 1.4 1 0 0 1 1 1 0 MDM2-binding PvlArgDC PF01862.11 gi|345005847|ref|YP_004808700.1| - 8.7e-25 87.2 0.0 1.1e-24 86.9 0.0 1.0 1 0 0 1 1 1 1 Pyruvoyl-dependent arginine decarboxylase (PvlArgDC) Tad_C PF09977.4 gi|345005847|ref|YP_004808700.1| - 0.056 14.4 3.0 0.083 13.9 1.6 1.6 1 1 1 2 2 2 0 Putative Tad-like Flp pilus-assembly Shadoo PF14999.1 gi|345005847|ref|YP_004808700.1| - 1.6 8.6 8.3 0.081 12.7 1.8 1.8 2 1 1 3 3 3 0 Shadow of prion protein, neuroprotective AAA PF00004.24 gi|345005848|ref|YP_004808701.1| - 9.8e-44 148.7 0.9 2.8e-43 147.3 0.0 2.0 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_2 PF07724.9 gi|345005848|ref|YP_004808701.1| - 3.9e-08 33.3 0.0 9.5e-08 32.1 0.0 1.7 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) RuvB_N PF05496.7 gi|345005848|ref|YP_004808701.1| - 3.2e-07 29.6 0.0 1e-06 27.9 0.0 1.8 1 1 1 2 2 2 1 Holliday junction DNA helicase ruvB N-terminus AAA_22 PF13401.1 gi|345005848|ref|YP_004808701.1| - 2.7e-06 27.5 0.6 0.00015 21.8 0.1 2.9 2 1 0 2 2 1 1 AAA domain AAA_5 PF07728.9 gi|345005848|ref|YP_004808701.1| - 3e-06 27.0 0.3 2.3e-05 24.1 0.2 2.4 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_16 PF13191.1 gi|345005848|ref|YP_004808701.1| - 5.1e-06 26.6 2.4 0.0016 18.4 0.0 3.2 2 1 2 4 4 4 1 AAA ATPase domain AAA_17 PF13207.1 gi|345005848|ref|YP_004808701.1| - 4.1e-05 24.3 2.4 5e-05 24.0 0.0 2.4 2 2 0 2 2 1 1 AAA domain TIP49 PF06068.8 gi|345005848|ref|YP_004808701.1| - 0.00024 19.9 0.0 0.00051 18.8 0.0 1.5 1 0 0 1 1 1 1 TIP49 C-terminus AAA_33 PF13671.1 gi|345005848|ref|YP_004808701.1| - 0.00029 20.7 0.0 0.00095 19.0 0.0 2.0 1 0 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|345005848|ref|YP_004808701.1| - 0.00033 20.3 0.4 0.001 18.7 0.2 1.9 1 1 0 1 1 1 1 Part of AAA domain DUF815 PF05673.8 gi|345005848|ref|YP_004808701.1| - 0.00045 19.2 0.0 0.00099 18.0 0.0 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF815) AAA_14 PF13173.1 gi|345005848|ref|YP_004808701.1| - 0.00062 19.6 0.0 0.0013 18.5 0.0 1.6 1 0 0 1 1 1 1 AAA domain DMPK_coil PF08826.5 gi|345005848|ref|YP_004808701.1| - 0.0011 18.7 4.8 0.004 17.0 2.8 2.4 2 0 0 2 2 1 1 DMPK coiled coil domain like NACHT PF05729.7 gi|345005848|ref|YP_004808701.1| - 0.0011 18.6 1.2 0.021 14.4 0.0 2.8 3 0 0 3 3 3 1 NACHT domain IstB_IS21 PF01695.12 gi|345005848|ref|YP_004808701.1| - 0.0012 18.2 0.1 0.0052 16.2 0.0 2.0 2 0 0 2 2 2 1 IstB-like ATP binding protein Mg_chelatase PF01078.16 gi|345005848|ref|YP_004808701.1| - 0.0017 17.5 0.1 0.005 16.0 0.0 1.7 2 0 0 2 2 1 1 Magnesium chelatase, subunit ChlI Zeta_toxin PF06414.7 gi|345005848|ref|YP_004808701.1| - 0.0023 17.0 0.0 0.0048 16.0 0.0 1.5 1 0 0 1 1 1 1 Zeta toxin AAA_28 PF13521.1 gi|345005848|ref|YP_004808701.1| - 0.0029 17.6 1.2 0.006 16.5 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_18 PF13238.1 gi|345005848|ref|YP_004808701.1| - 0.0032 17.7 0.2 0.018 15.3 0.0 2.4 2 0 0 2 2 2 1 AAA domain NTPase_1 PF03266.10 gi|345005848|ref|YP_004808701.1| - 0.007 16.0 0.5 0.05 13.3 0.1 2.6 2 1 0 2 2 2 1 NTPase Sigma54_activat PF00158.21 gi|345005848|ref|YP_004808701.1| - 0.0074 15.7 0.1 0.054 12.9 0.0 2.4 2 1 0 2 2 2 1 Sigma-54 interaction domain HAUS6_N PF14661.1 gi|345005848|ref|YP_004808701.1| - 0.0076 15.6 0.5 0.013 14.8 0.4 1.3 1 0 0 1 1 1 1 HAUS augmin-like complex subunit 6 N-terminus AFG1_ATPase PF03969.11 gi|345005848|ref|YP_004808701.1| - 0.011 14.5 0.0 0.17 10.6 0.0 2.2 2 0 0 2 2 2 0 AFG1-like ATPase NB-ARC PF00931.17 gi|345005848|ref|YP_004808701.1| - 0.011 14.5 0.0 0.054 12.3 0.0 2.0 2 0 0 2 2 2 0 NB-ARC domain AAA_3 PF07726.6 gi|345005848|ref|YP_004808701.1| - 0.013 15.0 0.0 0.035 13.6 0.0 1.8 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) RNA_helicase PF00910.17 gi|345005848|ref|YP_004808701.1| - 0.021 15.0 0.0 0.057 13.5 0.0 1.8 2 0 0 2 2 1 0 RNA helicase CASP_C PF08172.7 gi|345005848|ref|YP_004808701.1| - 0.027 13.4 0.3 0.04 12.9 0.2 1.3 1 0 0 1 1 1 0 CASP C terminal AAA_23 PF13476.1 gi|345005848|ref|YP_004808701.1| - 0.03 14.6 1.6 10 6.3 0.0 2.5 2 0 0 2 2 2 0 AAA domain Torsin PF06309.6 gi|345005848|ref|YP_004808701.1| - 0.033 14.0 0.0 0.071 13.0 0.0 1.5 1 0 0 1 1 1 0 Torsin CPT PF07931.7 gi|345005848|ref|YP_004808701.1| - 0.036 13.7 0.0 0.088 12.4 0.0 1.7 1 0 0 1 1 1 0 Chloramphenicol phosphotransferase-like protein AAA_11 PF13086.1 gi|345005848|ref|YP_004808701.1| - 0.043 13.3 0.7 0.13 11.8 0.0 2.1 2 1 0 2 2 2 0 AAA domain DUF904 PF06005.7 gi|345005848|ref|YP_004808701.1| - 0.047 13.9 3.8 0.11 12.8 2.2 1.9 2 0 0 2 2 1 0 Protein of unknown function (DUF904) ABC_tran PF00005.22 gi|345005848|ref|YP_004808701.1| - 0.054 13.8 1.4 0.23 11.7 0.0 2.5 2 2 0 2 2 2 0 ABC transporter UPF0079 PF02367.12 gi|345005848|ref|YP_004808701.1| - 0.059 13.0 0.0 0.15 11.7 0.0 1.6 2 0 0 2 2 1 0 Uncharacterised P-loop hydrolase UPF0079 Sigma54_activ_2 PF14532.1 gi|345005848|ref|YP_004808701.1| - 0.089 12.8 0.0 0.24 11.4 0.0 1.7 1 0 0 1 1 1 0 Sigma-54 interaction domain Nup54 PF13874.1 gi|345005848|ref|YP_004808701.1| - 0.12 12.0 1.2 0.42 10.2 0.6 2.0 2 0 0 2 2 2 0 Nucleoporin complex subunit 54 Parvo_NS1 PF01057.12 gi|345005848|ref|YP_004808701.1| - 0.13 11.1 0.1 0.28 10.0 0.0 1.5 2 0 0 2 2 2 0 Parvovirus non-structural protein NS1 BLOC1_2 PF10046.4 gi|345005848|ref|YP_004808701.1| - 0.13 12.4 1.5 0.43 10.7 0.5 2.3 2 0 0 2 2 1 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Atrophin-1 PF03154.10 gi|345005848|ref|YP_004808701.1| - 0.14 10.2 0.3 0.22 9.6 0.2 1.2 1 0 0 1 1 1 0 Atrophin-1 family DUF2203 PF09969.4 gi|345005848|ref|YP_004808701.1| - 0.15 12.3 3.8 0.15 12.2 1.4 1.9 2 0 0 2 2 1 0 Uncharacterized conserved protein (DUF2203) V_ATPase_I PF01496.14 gi|345005848|ref|YP_004808701.1| - 0.21 9.4 1.0 0.27 9.0 0.7 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family AAA_25 PF13481.1 gi|345005848|ref|YP_004808701.1| - 0.35 10.2 8.2 0.29 10.4 0.1 3.4 2 1 1 4 4 4 0 AAA domain KaiC PF06745.8 gi|345005848|ref|YP_004808701.1| - 0.44 9.6 3.1 1.3 8.1 0.0 2.7 2 1 0 3 3 3 0 KaiC APG6 PF04111.7 gi|345005848|ref|YP_004808701.1| - 0.75 8.7 3.2 1.3 7.9 2.2 1.3 1 0 0 1 1 1 0 Autophagy protein Apg6 DUF4061 PF13270.1 gi|345005848|ref|YP_004808701.1| - 3.7 7.7 6.6 7.2 6.7 1.0 3.1 4 0 0 4 4 2 0 Domain of unknown function (DUF4061) Peptidase_M3 PF01432.15 gi|345005849|ref|YP_004808702.1| - 3.2e-65 220.9 8.0 3.2e-65 220.9 5.5 1.8 2 0 0 2 2 2 1 Peptidase family M3 Peptidase_M3_N PF08439.5 gi|345005849|ref|YP_004808702.1| - 6.9e-22 77.2 4.5 6.9e-22 77.2 0.8 2.9 2 0 0 2 2 2 1 Oligopeptidase F DUF3091 PF11291.3 gi|345005849|ref|YP_004808702.1| - 0.029 14.3 0.7 0.084 12.8 0.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3091) Peptidase_M28 PF04389.12 gi|345005850|ref|YP_004808703.1| - 1.5e-31 109.4 0.1 2.4e-31 108.8 0.1 1.3 1 0 0 1 1 1 1 Peptidase family M28 PA PF02225.17 gi|345005850|ref|YP_004808703.1| - 4.2e-09 36.0 0.0 2.4e-08 33.5 0.0 2.1 2 0 0 2 2 2 1 PA domain Peptidase_M20 PF01546.23 gi|345005850|ref|YP_004808703.1| - 1.1e-07 31.5 0.6 1.7e-07 30.9 0.4 1.3 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 Peptidase_M42 PF05343.9 gi|345005850|ref|YP_004808703.1| - 1.1e-05 24.4 0.4 1.7e-05 23.7 0.2 1.2 1 0 0 1 1 1 1 M42 glutamyl aminopeptidase Mur_ligase PF01225.20 gi|345005850|ref|YP_004808703.1| - 0.1 12.7 0.1 3.9 7.6 0.1 2.6 1 1 0 1 1 1 0 Mur ligase family, catalytic domain TrbC PF04956.8 gi|345005851|ref|YP_004808704.1| - 0.054 13.5 0.2 0.063 13.2 0.1 1.2 1 0 0 1 1 1 0 TrbC/VIRB2 family Sensor_TM1 PF13755.1 gi|345005851|ref|YP_004808704.1| - 0.055 12.9 0.0 0.06 12.8 0.0 1.2 1 0 0 1 1 1 0 Sensor N-terminal transmembrane domain DUF2892 PF11127.3 gi|345005851|ref|YP_004808704.1| - 0.071 12.9 1.4 0.087 12.6 1.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2892) Vma12 PF11712.3 gi|345005851|ref|YP_004808704.1| - 0.13 11.9 0.3 0.13 11.9 0.2 1.1 1 0 0 1 1 1 0 Endoplasmic reticulum-based factor for assembly of V-ATPase PseudoU_synth_1 PF01416.15 gi|345005852|ref|YP_004808705.1| - 2.2e-17 63.3 0.0 2.2e-10 40.9 0.0 2.1 2 0 0 2 2 2 2 tRNA pseudouridine synthase tRNA-synt_His PF13393.1 gi|345005853|ref|YP_004808706.1| - 2.7e-53 181.0 0.0 3.5e-53 180.6 0.0 1.1 1 0 0 1 1 1 1 Histidyl-tRNA synthetase tRNA-synt_2b PF00587.20 gi|345005853|ref|YP_004808706.1| - 3.2e-19 69.1 0.0 5.2e-19 68.4 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.15 gi|345005853|ref|YP_004808706.1| - 1.2e-12 47.5 0.2 3.2e-12 46.2 0.0 1.7 2 0 0 2 2 2 1 Anticodon binding domain ACT PF01842.20 gi|345005853|ref|YP_004808706.1| - 0.1 12.1 0.2 0.38 10.2 0.1 2.1 2 0 0 2 2 2 0 ACT domain Asn_synthase PF00733.16 gi|345005854|ref|YP_004808707.1| - 3.4e-05 23.4 0.2 4.9e-05 22.9 0.1 1.6 1 1 0 1 1 1 1 Asparagine synthase tRNA_Me_trans PF03054.11 gi|345005854|ref|YP_004808707.1| - 0.039 12.4 0.0 0.13 10.8 0.0 1.8 1 1 0 1 1 1 0 tRNA methyl transferase PAPS_reduct PF01507.14 gi|345005854|ref|YP_004808707.1| - 0.064 13.0 0.0 0.1 12.3 0.0 1.4 1 1 0 1 1 1 0 Phosphoadenosine phosphosulfate reductase family QueC PF06508.8 gi|345005854|ref|YP_004808707.1| - 0.1 11.8 0.0 0.15 11.3 0.0 1.3 1 0 0 1 1 1 0 Queuosine biosynthesis protein QueC ATP_bind_4 PF01902.12 gi|345005854|ref|YP_004808707.1| - 0.11 11.7 0.1 0.16 11.3 0.1 1.5 1 1 0 1 1 1 0 ATP-binding region dsDNA_bind PF01984.15 gi|345005855|ref|YP_004808708.1| - 2.8e-28 98.0 12.2 3.4e-28 97.7 8.5 1.1 1 0 0 1 1 1 1 Double-stranded DNA-binding domain Trypan_glycop PF00913.14 gi|345005855|ref|YP_004808708.1| - 0.02 13.8 0.3 0.05 12.5 0.1 1.7 1 1 1 2 2 2 0 Trypanosome variant surface glycoprotein (A-type) FAM110_N PF14161.1 gi|345005855|ref|YP_004808708.1| - 0.065 13.5 1.0 0.091 13.0 0.7 1.3 1 0 0 1 1 1 0 Centrosome-associated N terminus Gluconate_2-dh3 PF13618.1 gi|345005855|ref|YP_004808708.1| - 0.22 11.6 7.7 0.32 11.1 3.5 2.0 1 1 1 2 2 2 0 Gluconate 2-dehydrogenase subunit 3 DUF4407 PF14362.1 gi|345005855|ref|YP_004808708.1| - 1.3 7.8 10.1 1.5 7.6 7.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) Mnd1 PF03962.10 gi|345005855|ref|YP_004808708.1| - 4.3 6.9 8.0 3.2 7.3 4.5 1.3 1 1 0 1 1 1 0 Mnd1 family Cgr1 PF03879.9 gi|345005855|ref|YP_004808708.1| - 8.1 6.6 10.7 1.2 9.3 0.9 2.3 1 1 1 2 2 2 0 Cgr1 family Ribosomal_S19e PF01090.14 gi|345005856|ref|YP_004808709.1| - 9.8e-46 154.6 0.0 1.1e-45 154.4 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S19e GntR PF00392.16 gi|345005856|ref|YP_004808709.1| - 1.3e-06 27.7 0.3 7.9e-05 22.0 0.1 2.9 3 0 0 3 3 3 1 Bacterial regulatory proteins, gntR family HTH_12 PF08461.5 gi|345005856|ref|YP_004808709.1| - 0.0072 16.0 1.1 0.017 14.8 0.1 2.1 3 0 0 3 3 3 1 Ribonuclease R winged-helix domain HTH_45 PF14947.1 gi|345005856|ref|YP_004808709.1| - 0.049 13.4 0.0 0.08 12.7 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix Rrf2 PF02082.15 gi|345005856|ref|YP_004808709.1| - 0.14 12.3 0.1 0.35 11.0 0.0 1.6 2 0 0 2 2 2 0 Transcriptional regulator UPF0104 PF03706.8 gi|345005857|ref|YP_004808710.1| - 6.1e-38 130.7 33.9 1.1e-37 129.8 23.5 1.4 1 1 0 1 1 1 1 Uncharacterised protein family (UPF0104) AIRS PF00586.19 gi|345005858|ref|YP_004808711.1| - 5.3e-15 55.4 1.8 5.3e-15 55.4 1.3 2.2 3 0 0 3 3 3 1 AIR synthase related protein, N-terminal domain AIRS_C PF02769.17 gi|345005858|ref|YP_004808711.1| - 2.5e-11 43.8 0.2 4.6e-11 42.9 0.1 1.4 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain Peptidase_M50 PF02163.17 gi|345005859|ref|YP_004808712.1| - 5e-17 61.5 2.2 5e-17 61.5 1.5 2.5 2 1 0 2 2 2 1 Peptidase family M50 MoaE PF02391.12 gi|345005861|ref|YP_004808714.1| - 3.9e-23 81.4 0.3 6.9e-23 80.6 0.2 1.4 1 0 0 1 1 1 1 MoaE protein AA_kinase PF00696.23 gi|345005862|ref|YP_004808715.1| - 1.2e-23 83.9 0.5 1.5e-23 83.5 0.3 1.1 1 0 0 1 1 1 1 Amino acid kinase family tRNA-synt_1f PF01921.13 gi|345005863|ref|YP_004808716.1| - 9.4e-101 337.0 0.0 1.3e-100 336.6 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (K) tRNA-synt_1g PF09334.6 gi|345005863|ref|YP_004808716.1| - 1.1e-08 34.2 0.0 3.4e-06 25.9 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (M) tRNA-synt_1e PF01406.14 gi|345005863|ref|YP_004808716.1| - 0.0046 16.1 0.0 0.015 14.4 0.0 1.8 2 0 0 2 2 2 1 tRNA synthetases class I (C) catalytic domain tRNA-synt_1b PF00579.20 gi|345005863|ref|YP_004808716.1| - 0.27 10.3 0.0 2.8 6.9 0.0 2.0 2 0 0 2 2 2 0 tRNA synthetases class I (W and Y) Peptidase_M50 PF02163.17 gi|345005864|ref|YP_004808717.1| - 5.3e-26 90.7 0.1 1.1e-25 89.6 0.1 1.6 1 0 0 1 1 1 1 Peptidase family M50 PDZ_2 PF13180.1 gi|345005864|ref|YP_004808717.1| - 1.7e-16 59.8 1.9 4.3e-06 26.5 0.0 3.4 2 1 1 3 3 3 3 PDZ domain PDZ PF00595.19 gi|345005864|ref|YP_004808717.1| - 1.8e-11 44.0 2.0 5.6e-07 29.6 0.3 2.6 1 1 1 2 2 2 2 PDZ domain (Also known as DHR or GLGF) Tricorn_PDZ PF14685.1 gi|345005864|ref|YP_004808717.1| - 8.3e-10 38.3 2.4 0.011 15.5 0.1 3.4 2 1 1 3 3 3 3 Tricorn protease PDZ domain PadR PF03551.9 gi|345005865|ref|YP_004808718.1| - 6.2e-22 77.1 0.1 9.1e-22 76.6 0.1 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family TrmB PF01978.14 gi|345005865|ref|YP_004808718.1| - 0.13 11.9 0.1 0.53 10.0 0.0 2.1 2 1 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB Chlor_dismutase PF06778.7 gi|345005866|ref|YP_004808719.1| - 9e-52 175.5 0.0 1.4e-51 175.0 0.0 1.3 1 0 0 1 1 1 1 Chlorite dismutase ABM PF03992.11 gi|345005866|ref|YP_004808719.1| - 2.5e-11 43.4 0.2 2.5e-11 43.4 0.1 3.5 4 0 0 4 4 4 1 Antibiotic biosynthesis monooxygenase Hexapep PF00132.19 gi|345005867|ref|YP_004808720.1| - 1.1e-06 27.8 0.9 0.45 10.1 0.1 3.8 4 0 0 4 4 4 3 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|345005867|ref|YP_004808720.1| - 0.76 9.3 6.3 19 4.9 0.7 3.3 2 1 0 3 3 3 0 Hexapeptide repeat of succinyl-transferase DrsE PF02635.10 gi|345005868|ref|YP_004808721.1| - 1e-09 38.4 0.0 1.2e-09 38.3 0.0 1.1 1 0 0 1 1 1 1 DsrE/DsrF-like family GPW_gp25 PF04965.9 gi|345005869|ref|YP_004808722.1| - 0.0055 16.2 0.1 0.0055 16.2 0.1 1.1 1 0 0 1 1 1 1 Gene 25-like lysozyme DUF3098 PF11297.3 gi|345005870|ref|YP_004808723.1| - 0.034 13.8 1.3 0.21 11.3 0.1 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF3098) Acyl_transf_3 PF01757.17 gi|345005871|ref|YP_004808724.1| - 0.21 10.3 7.5 0.28 9.9 5.2 1.1 1 0 0 1 1 1 0 Acyltransferase family Abi PF02517.11 gi|345005871|ref|YP_004808724.1| - 2.4 8.3 8.1 9.7 6.4 5.6 2.1 1 1 0 1 1 1 0 CAAX protease self-immunity DUF843 PF05814.6 gi|345005872|ref|YP_004808725.1| - 0.32 10.8 5.9 0.19 11.5 1.2 2.0 2 0 0 2 2 2 0 Baculovirus protein of unknown function (DUF843) Sugar_tr PF00083.19 gi|345005872|ref|YP_004808725.1| - 0.39 9.2 4.5 0.068 11.7 0.3 1.6 1 1 1 2 2 2 0 Sugar (and other) transporter TctB PF07331.6 gi|345005872|ref|YP_004808725.1| - 1.9 8.1 11.3 4 7.1 7.8 1.6 1 1 0 1 1 1 0 Tripartite tricarboxylate transporter TctB family Virul_fac_BrkB PF03631.10 gi|345005873|ref|YP_004808726.1| - 1.4e-38 132.7 23.5 1.7e-38 132.5 16.3 1.0 1 0 0 1 1 1 1 Virulence factor BrkB Pox_A9 PF04835.7 gi|345005873|ref|YP_004808726.1| - 0.14 12.0 2.0 0.16 11.8 0.2 2.0 2 0 0 2 2 2 0 A9 protein conserved region ABC2_membrane_3 PF12698.2 gi|345005873|ref|YP_004808726.1| - 4.2 6.2 28.6 8.3 5.3 19.9 1.5 1 1 0 1 1 1 0 ABC-2 family transporter protein NAD_synthase PF02540.12 gi|345005874|ref|YP_004808727.1| - 1.9e-76 256.1 0.0 2.2e-76 255.9 0.0 1.0 1 0 0 1 1 1 1 NAD synthase tRNA_Me_trans PF03054.11 gi|345005874|ref|YP_004808727.1| - 8.5e-06 24.5 0.0 0.00062 18.4 0.0 2.3 2 0 0 2 2 2 2 tRNA methyl transferase Asn_synthase PF00733.16 gi|345005874|ref|YP_004808727.1| - 0.00032 20.2 0.1 0.00046 19.7 0.0 1.3 1 0 0 1 1 1 1 Asparagine synthase QueC PF06508.8 gi|345005874|ref|YP_004808727.1| - 0.0012 18.2 0.0 0.0048 16.2 0.0 1.8 1 1 0 2 2 2 1 Queuosine biosynthesis protein QueC DUF3105 PF11303.3 gi|345005875|ref|YP_004808728.1| - 3.6e-27 94.7 0.1 4.8e-27 94.3 0.1 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3105) zf-C2H2_4 PF13894.1 gi|345005875|ref|YP_004808728.1| - 0.053 13.8 0.5 0.091 13.1 0.3 1.4 1 0 0 1 1 1 0 C2H2-type zinc finger SBP_bac_11 PF13531.1 gi|345005875|ref|YP_004808728.1| - 0.06 12.9 0.0 0.084 12.4 0.0 1.2 1 0 0 1 1 1 0 Bacterial extracellular solute-binding protein TM_helix PF05552.7 gi|345005877|ref|YP_004808730.1| - 1e-27 95.5 28.5 2.9e-13 49.2 1.4 4.5 5 0 0 5 5 5 3 Conserved TM helix MtrC PF04211.8 gi|345005877|ref|YP_004808730.1| - 0.026 13.5 1.0 0.026 13.5 0.7 3.5 3 1 0 3 3 3 0 Tetrahydromethanopterin S-methyltransferase, subunit C Colicin_V PF02674.11 gi|345005877|ref|YP_004808730.1| - 0.19 11.5 0.1 0.19 11.5 0.1 4.1 3 1 1 4 4 4 0 Colicin V production protein Cupin_2 PF07883.6 gi|345005878|ref|YP_004808731.1| - 3e-14 52.2 0.1 5.3e-14 51.4 0.1 1.4 1 0 0 1 1 1 1 Cupin domain Cupin_6 PF12852.2 gi|345005878|ref|YP_004808731.1| - 0.00015 21.4 0.1 0.00018 21.2 0.1 1.1 1 0 0 1 1 1 1 Cupin Cupin_1 PF00190.17 gi|345005878|ref|YP_004808731.1| - 0.00059 19.2 0.0 0.00072 19.0 0.0 1.2 1 0 0 1 1 1 1 Cupin Cupin_7 PF12973.2 gi|345005878|ref|YP_004808731.1| - 0.00071 19.3 0.0 0.0011 18.7 0.0 1.3 1 0 0 1 1 1 1 ChrR Cupin-like domain Cupin_3 PF05899.7 gi|345005878|ref|YP_004808731.1| - 0.00085 18.6 0.0 0.0015 17.8 0.0 1.6 1 1 0 1 1 1 1 Protein of unknown function (DUF861) Pirin PF02678.11 gi|345005878|ref|YP_004808731.1| - 0.05 13.4 0.0 0.064 13.1 0.0 1.2 1 0 0 1 1 1 0 Pirin 3-HAO PF06052.7 gi|345005878|ref|YP_004808731.1| - 0.068 12.5 0.0 0.073 12.4 0.0 1.1 1 0 0 1 1 1 0 3-hydroxyanthranilic acid dioxygenase DUF457 PF04307.9 gi|345005879|ref|YP_004808732.1| - 5.3e-09 35.6 13.5 8.5e-09 34.9 9.4 1.4 1 1 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) PIN_3 PF13470.1 gi|345005881|ref|YP_004808734.1| - 0.0078 16.8 0.5 0.018 15.6 0.3 1.6 1 1 0 1 1 1 1 PIN domain F_actin_bind PF08919.5 gi|345005882|ref|YP_004808735.1| - 0.033 13.8 0.0 4.2 7.1 0.0 2.4 2 0 0 2 2 2 0 F-actin binding PuR_N PF09182.5 gi|345005882|ref|YP_004808735.1| - 0.12 12.0 0.0 0.25 11.0 0.0 1.5 1 0 0 1 1 1 0 Bacterial purine repressor, N-terminal Ham1p_like PF01725.11 gi|345005883|ref|YP_004808736.1| - 1.3e-44 151.8 0.0 2.8e-44 150.7 0.0 1.5 1 1 0 1 1 1 1 Ham1 family Peptidase_M22 PF00814.20 gi|345005885|ref|YP_004808738.1| - 1.2e-73 247.9 0.0 1.6e-73 247.5 0.0 1.1 1 0 0 1 1 1 1 Glycoprotease family Kdo PF06293.9 gi|345005885|ref|YP_004808738.1| - 0.00064 18.8 0.0 0.071 12.1 0.0 2.2 2 0 0 2 2 2 2 Lipopolysaccharide kinase (Kdo/WaaP) family APH PF01636.18 gi|345005885|ref|YP_004808738.1| - 0.02 14.6 10.8 0.063 13.0 4.4 2.8 2 1 0 2 2 2 0 Phosphotransferase enzyme family RIO1 PF01163.17 gi|345005885|ref|YP_004808738.1| - 0.03 13.6 0.0 0.067 12.5 0.0 1.5 1 1 0 1 1 1 0 RIO1 family YycC PF14174.1 gi|345005885|ref|YP_004808738.1| - 0.13 11.9 0.1 0.45 10.2 0.0 1.9 2 0 0 2 2 2 0 YycC-like protein Ribosomal_S24e PF01282.14 gi|345005886|ref|YP_004808739.1| - 3.1e-26 90.9 0.1 3.9e-26 90.6 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein S24e hNIFK_binding PF12196.3 gi|345005886|ref|YP_004808739.1| - 0.22 10.9 8.7 0.66 9.4 0.1 2.5 2 0 0 2 2 2 0 FHA Ki67 binding domain of hNIFK IncA PF04156.9 gi|345005887|ref|YP_004808740.1| - 0.17 11.4 2.0 0.2 11.2 1.4 1.0 1 0 0 1 1 1 0 IncA protein SseC PF04888.7 gi|345005887|ref|YP_004808740.1| - 6.4 6.0 6.2 8.2 5.6 4.3 1.2 1 0 0 1 1 1 0 Secretion system effector C (SseC) like family DUF359 PF04019.7 gi|345005888|ref|YP_004808741.1| - 2e-37 127.2 0.0 2.7e-37 126.8 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF359) Glyco_trans_4_4 PF13579.1 gi|345005888|ref|YP_004808741.1| - 0.14 12.3 3.1 0.22 11.6 2.2 1.3 1 1 0 1 1 1 0 Glycosyl transferase 4-like domain Spt4 PF06093.8 gi|345005889|ref|YP_004808742.1| - 5.4e-15 55.0 0.1 6.3e-15 54.8 0.1 1.1 1 0 0 1 1 1 1 Spt4/RpoE2 zinc finger DZR PF12773.2 gi|345005889|ref|YP_004808742.1| - 0.00029 20.5 2.0 0.00045 19.9 1.4 1.2 1 0 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|345005889|ref|YP_004808742.1| - 0.014 14.5 1.4 0.022 13.9 1.0 1.3 1 0 0 1 1 1 0 zinc-ribbon domain zf-RanBP PF00641.13 gi|345005889|ref|YP_004808742.1| - 0.048 12.7 1.4 0.066 12.3 1.0 1.3 1 0 0 1 1 1 0 Zn-finger in Ran binding protein and others zf-MYND PF01753.13 gi|345005889|ref|YP_004808742.1| - 0.057 13.2 0.8 0.073 12.9 0.5 1.2 1 0 0 1 1 1 0 MYND finger zinc_ribbon_2 PF13240.1 gi|345005889|ref|YP_004808742.1| - 0.11 12.0 3.2 0.18 11.3 2.2 1.3 1 0 0 1 1 1 0 zinc-ribbon domain SHS2_Rpb7-N PF03876.12 gi|345005890|ref|YP_004808743.1| - 3.4e-13 49.4 0.1 5.8e-13 48.7 0.0 1.4 1 0 0 1 1 1 1 SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397 S1 PF00575.18 gi|345005890|ref|YP_004808743.1| - 6.9e-13 48.5 0.4 1.4e-12 47.4 0.3 1.6 1 0 0 1 1 1 1 S1 RNA binding domain Fcf1 PF04900.7 gi|345005891|ref|YP_004808744.1| - 4.3e-08 33.1 0.0 5.7e-08 32.7 0.0 1.1 1 0 0 1 1 1 1 Fcf1 DUF188 PF02639.9 gi|345005891|ref|YP_004808744.1| - 3.4e-05 23.3 0.4 4.9e-05 22.7 0.3 1.3 1 0 0 1 1 1 1 Uncharacterized BCR, YaiI/YqxD family COG1671 PIN_4 PF13638.1 gi|345005891|ref|YP_004808744.1| - 0.0009 19.3 0.0 0.059 13.4 0.0 2.1 1 1 1 2 2 2 1 PIN domain PIN PF01850.16 gi|345005891|ref|YP_004808744.1| - 0.0055 17.0 0.2 0.012 15.9 0.2 1.5 1 1 0 1 1 1 1 PIN domain PIN_3 PF13470.1 gi|345005891|ref|YP_004808744.1| - 0.35 11.5 3.8 1.3 9.7 2.7 1.8 1 1 0 1 1 1 0 PIN domain GTP_EFTU PF00009.22 gi|345005892|ref|YP_004808745.1| - 9.3e-42 142.5 0.7 1.3e-41 142.0 0.5 1.2 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain eIF2_C PF09173.6 gi|345005892|ref|YP_004808745.1| - 3.2e-26 91.2 0.0 7.1e-26 90.0 0.0 1.6 1 0 0 1 1 1 1 Initiation factor eIF2 gamma, C terminal GTP_EFTU_D2 PF03144.20 gi|345005892|ref|YP_004808745.1| - 2.2e-06 27.6 0.4 6.4e-06 26.1 0.3 1.8 1 0 0 1 1 1 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.18 gi|345005892|ref|YP_004808745.1| - 0.00066 19.6 0.0 0.0012 18.7 0.0 1.6 1 0 0 1 1 1 1 50S ribosome-binding GTPase PduV-EutP PF10662.4 gi|345005892|ref|YP_004808745.1| - 0.0018 17.8 1.3 0.11 11.9 0.0 2.3 2 0 0 2 2 2 1 Ethanolamine utilisation - propanediol utilisation SRPRB PF09439.5 gi|345005892|ref|YP_004808745.1| - 0.024 13.8 0.1 0.61 9.2 0.1 2.2 1 1 0 1 1 1 0 Signal recognition particle receptor beta subunit Miro PF08477.8 gi|345005892|ref|YP_004808745.1| - 0.029 14.8 0.0 0.086 13.3 0.0 1.8 1 1 0 1 1 1 0 Miro-like protein FeoB_N PF02421.13 gi|345005892|ref|YP_004808745.1| - 0.1 11.8 3.2 4.8 6.4 0.0 2.4 2 1 0 2 2 2 0 Ferrous iron transport protein B Dynamin_N PF00350.18 gi|345005892|ref|YP_004808745.1| - 0.15 11.8 0.3 1.4 8.7 0.0 2.3 1 1 1 2 2 2 0 Dynamin family Arylsulfotran_2 PF14269.1 gi|345005894|ref|YP_004808747.1| - 4.4e-10 39.1 0.5 8.1e-06 25.1 0.4 2.4 2 1 0 2 2 2 2 Arylsulfotransferase (ASST) Arylsulfotrans PF05935.6 gi|345005894|ref|YP_004808747.1| - 8e-10 37.8 3.0 1.1e-09 37.3 1.3 1.7 2 0 0 2 2 2 1 Arylsulfotransferase (ASST) DUF504 PF04457.7 gi|345005894|ref|YP_004808747.1| - 0.23 11.6 1.5 0.45 10.6 0.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF504) Lactamase_B_2 PF12706.2 gi|345005895|ref|YP_004808748.1| - 1.5e-15 57.2 0.2 2.3e-15 56.6 0.2 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|345005895|ref|YP_004808748.1| - 4.9e-06 26.3 2.3 1.2e-05 25.1 1.6 1.7 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily AAA PF00004.24 gi|345005897|ref|YP_004808750.1| - 3.9e-39 133.8 0.2 7.9e-39 132.8 0.0 1.6 2 0 0 2 2 1 1 ATPase family associated with various cellular activities (AAA) AAA_17 PF13207.1 gi|345005897|ref|YP_004808750.1| - 3.3e-09 37.6 0.7 1.5e-08 35.5 0.0 2.5 2 1 0 2 2 2 1 AAA domain AAA_18 PF13238.1 gi|345005897|ref|YP_004808750.1| - 5.1e-07 30.0 0.4 2.5e-05 24.5 0.0 3.0 3 0 0 3 3 3 1 AAA domain AAA_5 PF07728.9 gi|345005897|ref|YP_004808750.1| - 4.8e-06 26.3 0.1 2.3e-05 24.1 0.1 2.2 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_33 PF13671.1 gi|345005897|ref|YP_004808750.1| - 6.5e-06 26.0 0.0 1.7e-05 24.7 0.0 1.8 1 1 0 1 1 1 1 AAA domain AAA_28 PF13521.1 gi|345005897|ref|YP_004808750.1| - 9.1e-06 25.7 2.0 2.7e-05 24.2 0.1 2.7 2 1 0 2 2 2 1 AAA domain RuvB_N PF05496.7 gi|345005897|ref|YP_004808750.1| - 5e-05 22.4 0.0 9.8e-05 21.4 0.0 1.5 1 0 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus AAA_16 PF13191.1 gi|345005897|ref|YP_004808750.1| - 5.3e-05 23.2 6.2 0.00054 20.0 0.3 4.1 2 1 1 3 3 3 1 AAA ATPase domain AAA_22 PF13401.1 gi|345005897|ref|YP_004808750.1| - 6.4e-05 23.1 0.5 0.0026 17.9 0.1 2.7 2 1 0 2 2 1 1 AAA domain AAA_2 PF07724.9 gi|345005897|ref|YP_004808750.1| - 9.3e-05 22.3 1.3 0.00028 20.8 0.0 2.4 2 1 0 2 2 2 1 AAA domain (Cdc48 subfamily) AAA_25 PF13481.1 gi|345005897|ref|YP_004808750.1| - 0.00081 18.8 0.6 0.0094 15.3 0.0 2.7 2 2 1 3 3 3 1 AAA domain TIP49 PF06068.8 gi|345005897|ref|YP_004808750.1| - 0.00092 18.0 0.0 0.0032 16.2 0.0 1.9 2 0 0 2 2 2 1 TIP49 C-terminus SKI PF01202.17 gi|345005897|ref|YP_004808750.1| - 0.002 18.0 0.0 0.0049 16.7 0.0 1.7 1 0 0 1 1 1 1 Shikimate kinase AAA_19 PF13245.1 gi|345005897|ref|YP_004808750.1| - 0.0023 17.6 0.0 0.0072 16.0 0.0 1.9 1 0 0 1 1 1 1 Part of AAA domain MMR_HSR1 PF01926.18 gi|345005897|ref|YP_004808750.1| - 0.0036 17.2 0.0 0.0075 16.2 0.0 1.6 1 0 0 1 1 1 1 50S ribosome-binding GTPase AAA_14 PF13173.1 gi|345005897|ref|YP_004808750.1| - 0.0055 16.6 0.1 0.016 15.1 0.0 1.9 2 0 0 2 2 1 1 AAA domain T2SE PF00437.15 gi|345005897|ref|YP_004808750.1| - 0.0061 15.4 0.0 0.011 14.6 0.0 1.4 1 0 0 1 1 1 1 Type II/IV secretion system protein Cytidylate_kin2 PF13189.1 gi|345005897|ref|YP_004808750.1| - 0.0075 16.2 0.0 0.016 15.1 0.0 1.5 1 0 0 1 1 1 1 Cytidylate kinase-like family ResIII PF04851.10 gi|345005897|ref|YP_004808750.1| - 0.0077 16.0 0.0 0.012 15.4 0.0 1.4 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit AAA_3 PF07726.6 gi|345005897|ref|YP_004808750.1| - 0.0086 15.6 0.0 0.015 14.8 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Sigma54_activ_2 PF14532.1 gi|345005897|ref|YP_004808750.1| - 0.0089 16.0 0.0 0.016 15.2 0.0 1.4 1 0 0 1 1 1 1 Sigma-54 interaction domain RNA_helicase PF00910.17 gi|345005897|ref|YP_004808750.1| - 0.0092 16.1 0.0 0.019 15.1 0.0 1.5 1 0 0 1 1 1 1 RNA helicase IstB_IS21 PF01695.12 gi|345005897|ref|YP_004808750.1| - 0.012 14.9 0.0 0.021 14.2 0.0 1.5 1 0 0 1 1 1 0 IstB-like ATP binding protein KaiC PF06745.8 gi|345005897|ref|YP_004808750.1| - 0.017 14.2 0.1 0.04 13.0 0.1 1.6 1 1 0 1 1 1 0 KaiC AAA_11 PF13086.1 gi|345005897|ref|YP_004808750.1| - 0.021 14.4 0.0 0.03 13.8 0.0 1.4 1 1 0 1 1 1 0 AAA domain NACHT PF05729.7 gi|345005897|ref|YP_004808750.1| - 0.021 14.4 0.1 4 7.0 0.0 2.5 1 1 1 2 2 2 0 NACHT domain ABC_tran PF00005.22 gi|345005897|ref|YP_004808750.1| - 0.022 15.0 0.0 0.059 13.6 0.0 1.8 1 0 0 1 1 1 0 ABC transporter MobB PF03205.9 gi|345005897|ref|YP_004808750.1| - 0.032 13.9 0.0 0.11 12.1 0.0 1.9 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B Mg_chelatase PF01078.16 gi|345005897|ref|YP_004808750.1| - 0.035 13.2 0.0 0.067 12.3 0.0 1.5 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI DUF815 PF05673.8 gi|345005897|ref|YP_004808750.1| - 0.038 12.8 0.1 0.078 11.8 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF815) Rad17 PF03215.10 gi|345005897|ref|YP_004808750.1| - 0.068 11.8 0.0 0.093 11.3 0.0 1.2 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein Zeta_toxin PF06414.7 gi|345005897|ref|YP_004808750.1| - 0.073 12.1 0.0 0.17 10.9 0.0 1.6 1 0 0 1 1 1 0 Zeta toxin Guanylate_kin PF00625.16 gi|345005897|ref|YP_004808750.1| - 0.081 12.3 0.1 7.2 6.0 0.0 2.4 1 1 1 2 2 2 0 Guanylate kinase CBFD_NFYB_HMF PF00808.18 gi|345005897|ref|YP_004808750.1| - 0.085 12.9 0.2 0.46 10.5 0.0 2.1 2 0 0 2 2 2 0 Histone-like transcription factor (CBF/NF-Y) and archaeal histone SRP54 PF00448.17 gi|345005897|ref|YP_004808750.1| - 0.088 12.2 0.8 0.31 10.4 0.0 2.2 2 1 1 3 3 2 0 SRP54-type protein, GTPase domain KTI12 PF08433.5 gi|345005897|ref|YP_004808750.1| - 0.12 11.5 0.0 0.28 10.3 0.0 1.6 1 0 0 1 1 1 0 Chromatin associated protein KTI12 Na_H_Exchanger PF00999.16 gi|345005898|ref|YP_004808751.1| - 0.013 14.0 0.9 0.013 14.0 0.6 1.1 1 0 0 1 1 1 0 Sodium/hydrogen exchanger family MASE1 PF05231.9 gi|345005898|ref|YP_004808751.1| - 0.013 14.5 0.5 0.018 14.0 0.4 1.2 1 0 0 1 1 1 0 MASE1 DUF4149 PF13664.1 gi|345005898|ref|YP_004808751.1| - 0.021 14.8 0.5 0.033 14.2 0.2 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4149) CbiM PF01891.11 gi|345005898|ref|YP_004808751.1| - 0.053 13.1 0.6 0.062 12.8 0.4 1.1 1 0 0 1 1 1 0 Cobalt uptake substrate-specific transmembrane region SdpI PF13630.1 gi|345005898|ref|YP_004808751.1| - 0.92 9.2 2.8 0.72 9.6 0.7 1.6 1 1 1 2 2 2 0 SdpI/YhfL protein family AAT PF03417.11 gi|345005900|ref|YP_004808753.1| - 2.3e-14 53.4 0.0 3.2e-14 52.9 0.0 1.1 1 0 0 1 1 1 1 Acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase NAAA-beta PF15508.1 gi|345005900|ref|YP_004808753.1| - 0.0002 21.6 0.0 0.00042 20.6 0.0 1.5 1 0 0 1 1 1 1 beta subunit of N-acylethanolamine-hydrolyzing acid amidase Thiolase_N PF00108.18 gi|345005901|ref|YP_004808754.1| - 5e-77 258.4 0.8 9.4e-77 257.5 0.5 1.5 1 0 0 1 1 1 1 Thiolase, N-terminal domain Thiolase_C PF02803.13 gi|345005901|ref|YP_004808754.1| - 1.3e-42 144.0 0.1 2.6e-42 143.1 0.1 1.4 1 0 0 1 1 1 1 Thiolase, C-terminal domain ketoacyl-synt PF00109.21 gi|345005901|ref|YP_004808754.1| - 0.00021 20.8 0.2 0.00041 19.9 0.2 1.5 1 0 0 1 1 1 1 Beta-ketoacyl synthase, N-terminal domain HTH_7 PF02796.10 gi|345005901|ref|YP_004808754.1| - 0.11 12.3 0.0 0.33 10.8 0.0 1.7 2 0 0 2 2 2 0 Helix-turn-helix domain of resolvase Lactamase_B PF00753.22 gi|345005902|ref|YP_004808755.1| - 2.6e-21 76.1 13.5 3.8e-21 75.6 9.3 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|345005902|ref|YP_004808755.1| - 0.0032 17.0 0.8 0.0043 16.6 0.5 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain AMP-binding PF00501.23 gi|345005903|ref|YP_004808756.1| - 3.4e-89 299.1 0.0 3.9e-89 298.9 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme TrkA_N PF02254.13 gi|345005904|ref|YP_004808757.1| - 2.5e-32 111.2 0.6 5.4e-32 110.2 0.4 1.6 1 0 0 1 1 1 1 TrkA-N domain Na_H_Exchanger PF00999.16 gi|345005904|ref|YP_004808757.1| - 1.2e-30 106.2 47.0 1.7e-30 105.8 32.5 1.1 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family TrkA_C PF02080.16 gi|345005904|ref|YP_004808757.1| - 1.6e-13 49.9 0.2 5.5e-13 48.3 0.0 2.0 2 0 0 2 2 2 1 TrkA-C domain NAD_binding_7 PF13241.1 gi|345005904|ref|YP_004808757.1| - 2.7e-07 30.7 0.1 6.9e-07 29.4 0.1 1.7 1 0 0 1 1 1 1 Putative NAD(P)-binding F420_oxidored PF03807.12 gi|345005904|ref|YP_004808757.1| - 5.7e-07 29.8 2.9 0.00054 20.3 0.3 3.5 2 1 1 3 3 3 1 NADP oxidoreductase coenzyme F420-dependent UDPG_MGDP_dh_N PF03721.9 gi|345005904|ref|YP_004808757.1| - 2.3e-05 23.8 0.2 4.1e-05 23.0 0.2 1.4 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain ApbA PF02558.11 gi|345005904|ref|YP_004808757.1| - 6e-05 22.5 0.2 0.00017 21.0 0.1 1.8 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA FAD_binding_3 PF01494.14 gi|345005904|ref|YP_004808757.1| - 9.4e-05 21.6 0.1 0.00013 21.1 0.1 1.2 1 0 0 1 1 1 1 FAD binding domain NAD_binding_10 PF13460.1 gi|345005904|ref|YP_004808757.1| - 0.00031 20.7 0.9 0.00067 19.7 0.6 1.6 1 0 0 1 1 1 1 NADH(P)-binding NAD_Gly3P_dh_N PF01210.18 gi|345005904|ref|YP_004808757.1| - 0.00063 19.4 0.1 0.0013 18.4 0.0 1.6 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus DAO PF01266.19 gi|345005904|ref|YP_004808757.1| - 0.00065 18.7 0.1 0.00093 18.1 0.1 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase 3HCDH_N PF02737.13 gi|345005904|ref|YP_004808757.1| - 0.00085 19.0 0.3 0.0022 17.7 0.2 1.7 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain FAD_binding_2 PF00890.19 gi|345005904|ref|YP_004808757.1| - 0.0025 16.7 0.1 0.0039 16.0 0.1 1.3 1 0 0 1 1 1 1 FAD binding domain Shikimate_DH PF01488.15 gi|345005904|ref|YP_004808757.1| - 0.0035 17.4 0.1 0.0062 16.6 0.1 1.4 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase XdhC_C PF13478.1 gi|345005904|ref|YP_004808757.1| - 0.0046 17.2 0.1 0.0089 16.3 0.0 1.5 1 0 0 1 1 1 1 XdhC Rossmann domain Pyr_redox PF00070.22 gi|345005904|ref|YP_004808757.1| - 0.0052 17.1 0.7 0.018 15.4 0.3 2.1 2 0 0 2 2 1 1 Pyridine nucleotide-disulphide oxidoreductase Epimerase PF01370.16 gi|345005904|ref|YP_004808757.1| - 0.012 15.0 0.4 0.02 14.3 0.3 1.3 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family NAD_binding_2 PF03446.10 gi|345005904|ref|YP_004808757.1| - 0.016 15.0 0.2 0.035 13.9 0.1 1.6 1 1 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase Pyr_redox_2 PF07992.9 gi|345005904|ref|YP_004808757.1| - 0.019 14.8 0.8 0.028 14.2 0.1 1.7 2 0 0 2 2 1 0 Pyridine nucleotide-disulphide oxidoreductase NmrA PF05368.8 gi|345005904|ref|YP_004808757.1| - 0.021 14.0 1.0 1 8.5 0.4 2.2 1 1 1 2 2 2 0 NmrA-like family NAD_binding_8 PF13450.1 gi|345005904|ref|YP_004808757.1| - 0.023 14.7 0.3 0.065 13.2 0.2 1.8 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain IlvN PF07991.7 gi|345005904|ref|YP_004808757.1| - 0.029 13.7 0.1 0.051 12.9 0.1 1.3 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, catalytic domain Saccharop_dh PF03435.13 gi|345005904|ref|YP_004808757.1| - 0.032 13.2 1.2 0.088 11.7 0.3 1.9 1 1 1 2 2 2 0 Saccharopine dehydrogenase 2-Hacid_dh_C PF02826.14 gi|345005904|ref|YP_004808757.1| - 0.044 12.9 2.2 0.07 12.2 0.1 2.1 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Lycopene_cycl PF05834.7 gi|345005904|ref|YP_004808757.1| - 0.06 12.2 0.0 0.085 11.7 0.0 1.2 1 0 0 1 1 1 0 Lycopene cyclase protein TraD PF06412.6 gi|345005904|ref|YP_004808757.1| - 0.25 10.9 2.4 4 7.1 0.1 2.6 2 0 0 2 2 2 0 Conjugal transfer protein TraD Pilus_CpaD PF09476.5 gi|345005905|ref|YP_004808758.1| - 0.073 12.5 0.0 0.092 12.2 0.0 1.2 1 0 0 1 1 1 0 Pilus biogenesis CpaD protein (pilus_cpaD) tRNA-synt_2b PF00587.20 gi|345005906|ref|YP_004808759.1| - 4.4e-34 117.5 0.0 7.2e-34 116.8 0.0 1.4 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) Seryl_tRNA_N PF02403.17 gi|345005906|ref|YP_004808759.1| - 5.5e-28 97.1 3.4 8.4e-28 96.5 2.4 1.3 1 0 0 1 1 1 1 Seryl-tRNA synthetase N-terminal domain DUF3323 PF11796.3 gi|345005906|ref|YP_004808759.1| - 0.013 14.8 3.5 0.024 13.9 2.5 1.4 1 0 0 1 1 1 0 Protein of unknown function N-terminus (DUF3323) DUF3166 PF11365.3 gi|345005906|ref|YP_004808759.1| - 0.022 15.2 2.2 0.051 14.0 1.3 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF3166) RecX PF02631.11 gi|345005906|ref|YP_004808759.1| - 0.026 14.7 1.1 0.045 13.9 0.8 1.4 1 0 0 1 1 1 0 RecX family PilJ PF13675.1 gi|345005906|ref|YP_004808759.1| - 0.064 13.5 0.6 0.17 12.2 0.4 1.7 1 0 0 1 1 1 0 Type IV pili methyl-accepting chemotaxis transducer N-term OmpH PF03938.9 gi|345005906|ref|YP_004808759.1| - 0.17 11.7 1.9 0.33 10.8 1.3 1.4 1 0 0 1 1 1 0 Outer membrane protein (OmpH-like) Transposase_22 PF02994.9 gi|345005906|ref|YP_004808759.1| - 0.21 10.0 2.6 0.3 9.5 1.8 1.1 1 0 0 1 1 1 0 L1 transposable element DUF972 PF06156.8 gi|345005906|ref|YP_004808759.1| - 0.4 11.0 2.0 7 7.0 0.2 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF972) Mnd1 PF03962.10 gi|345005906|ref|YP_004808759.1| - 0.71 9.5 3.8 1.2 8.7 2.6 1.4 1 0 0 1 1 1 0 Mnd1 family SnoaL_2 PF12680.2 gi|345005907|ref|YP_004808760.1| - 2.4e-08 34.3 0.8 2.9e-08 34.0 0.6 1.1 1 0 0 1 1 1 1 SnoaL-like domain SnoaL_4 PF13577.1 gi|345005907|ref|YP_004808760.1| - 7.1e-05 22.7 0.2 0.00018 21.3 0.0 1.6 1 1 1 2 2 2 1 SnoaL-like domain DUF4440 PF14534.1 gi|345005907|ref|YP_004808760.1| - 0.00029 21.0 0.1 0.00044 20.4 0.0 1.3 1 1 0 1 1 1 1 Domain of unknown function (DUF4440) NTF2 PF02136.15 gi|345005907|ref|YP_004808760.1| - 0.0033 17.7 0.0 0.0041 17.4 0.0 1.1 1 0 0 1 1 1 1 Nuclear transport factor 2 (NTF2) domain SnoaL PF07366.7 gi|345005907|ref|YP_004808760.1| - 0.11 12.0 0.0 0.2 11.2 0.0 1.6 1 1 0 1 1 1 0 SnoaL-like polyketide cyclase DUF367 PF04034.8 gi|345005908|ref|YP_004808761.1| - 8.7e-47 157.8 0.0 1.1e-46 157.6 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF367) RLI PF04068.10 gi|345005908|ref|YP_004808761.1| - 4.7e-11 42.0 0.0 7.1e-11 41.5 0.0 1.3 1 0 0 1 1 1 1 Possible Fer4-like domain in RNase L inhibitor, RLI DTW PF03942.10 gi|345005908|ref|YP_004808761.1| - 0.0022 17.2 0.1 0.019 14.1 0.0 2.0 1 1 0 1 1 1 1 DTW domain FGGY_N PF00370.16 gi|345005909|ref|YP_004808762.1| - 5.1e-73 245.3 0.0 7e-73 244.9 0.0 1.2 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, N-terminal domain FGGY_C PF02782.11 gi|345005909|ref|YP_004808762.1| - 2.4e-58 197.0 3.4 4.3e-58 196.2 2.3 1.4 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, C-terminal domain BcrAD_BadFG PF01869.15 gi|345005909|ref|YP_004808762.1| - 0.002 17.4 0.3 0.13 11.4 0.0 2.2 2 0 0 2 2 2 2 BadF/BadG/BcrA/BcrD ATPase family DDE_Tnp_IS66 PF03050.9 gi|345005910|ref|YP_004808763.1| - 8.4e-53 179.3 0.1 8.4e-53 179.3 0.1 2.3 2 1 1 3 3 3 1 Transposase IS66 family DUF904 PF06005.7 gi|345005910|ref|YP_004808763.1| - 2.7e-10 40.3 5.7 9e-10 38.7 3.9 1.9 1 0 0 1 1 1 1 Protein of unknown function (DUF904) DUF972 PF06156.8 gi|345005910|ref|YP_004808763.1| - 0.00018 21.8 4.6 0.00052 20.3 3.2 1.7 1 0 0 1 1 1 1 Protein of unknown function (DUF972) CASP_C PF08172.7 gi|345005910|ref|YP_004808763.1| - 0.00025 20.1 2.2 0.00042 19.4 1.5 1.2 1 0 0 1 1 1 1 CASP C terminal bZIP_1 PF00170.16 gi|345005910|ref|YP_004808763.1| - 0.0021 17.9 7.9 0.0043 16.9 5.5 1.5 1 0 0 1 1 1 1 bZIP transcription factor SPX PF03105.14 gi|345005910|ref|YP_004808763.1| - 0.0024 17.7 0.1 0.0035 17.1 0.1 1.2 1 0 0 1 1 1 1 SPX domain Striatin PF08232.7 gi|345005910|ref|YP_004808763.1| - 0.0024 18.1 4.3 0.0051 17.1 3.0 1.5 1 0 0 1 1 1 1 Striatin family Tektin PF03148.9 gi|345005910|ref|YP_004808763.1| - 0.0041 15.7 2.6 0.0067 15.0 1.8 1.2 1 0 0 1 1 1 1 Tektin family DDE_Tnp_IS240 PF13610.1 gi|345005910|ref|YP_004808763.1| - 0.0083 16.1 0.7 0.018 15.0 0.0 1.9 2 1 0 2 2 1 1 DDE domain HOOK PF05622.7 gi|345005910|ref|YP_004808763.1| - 0.011 13.5 2.2 0.016 13.0 1.6 1.1 1 0 0 1 1 1 0 HOOK protein zf-IS66 PF13005.2 gi|345005910|ref|YP_004808763.1| - 0.017 15.1 8.8 0.047 13.6 6.1 1.8 1 1 0 1 1 1 0 zinc-finger binding domain of transposase IS66 HALZ PF02183.13 gi|345005910|ref|YP_004808763.1| - 0.033 13.8 5.2 0.094 12.4 3.6 1.8 1 0 0 1 1 1 0 Homeobox associated leucine zipper FlaC_arch PF05377.6 gi|345005910|ref|YP_004808763.1| - 0.035 13.9 2.8 0.079 12.8 2.0 1.6 1 0 0 1 1 1 0 Flagella accessory protein C (FlaC) ERM PF00769.14 gi|345005910|ref|YP_004808763.1| - 0.049 13.1 6.2 0.11 11.9 4.3 1.5 1 0 0 1 1 1 0 Ezrin/radixin/moesin family Fmp27_WPPW PF10359.4 gi|345005910|ref|YP_004808763.1| - 0.057 11.8 1.7 0.078 11.3 1.2 1.1 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain IncA PF04156.9 gi|345005910|ref|YP_004808763.1| - 0.059 12.9 6.1 0.12 11.9 4.2 1.5 1 0 0 1 1 1 0 IncA protein GAS PF13851.1 gi|345005910|ref|YP_004808763.1| - 0.071 12.3 5.1 0.13 11.4 3.5 1.3 1 0 0 1 1 1 0 Growth-arrest specific micro-tubule binding V_ATPase_I PF01496.14 gi|345005910|ref|YP_004808763.1| - 0.081 10.7 2.2 0.1 10.4 1.5 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family DUF1875 PF08961.5 gi|345005910|ref|YP_004808763.1| - 0.099 11.9 3.5 0.17 11.1 2.4 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1875) SpoVR PF04293.8 gi|345005910|ref|YP_004808763.1| - 0.12 10.7 4.7 0.18 10.1 3.2 1.2 1 0 0 1 1 1 0 SpoVR like protein NUDE_C PF04880.8 gi|345005910|ref|YP_004808763.1| - 0.16 12.3 3.2 0.3 11.4 2.2 1.4 1 0 0 1 1 1 0 NUDE protein, C-terminal conserved region TMF_DNA_bd PF12329.3 gi|345005910|ref|YP_004808763.1| - 0.19 11.5 8.9 0.46 10.3 6.2 1.5 1 0 0 1 1 1 0 TATA element modulatory factor 1 DNA binding Shugoshin_N PF07558.6 gi|345005910|ref|YP_004808763.1| - 0.33 10.7 5.9 0.15 11.8 1.9 2.0 1 1 0 1 1 1 0 Shugoshin N-terminal coiled-coil region Atg14 PF10186.4 gi|345005910|ref|YP_004808763.1| - 0.36 9.7 3.5 0.66 8.8 2.5 1.4 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 DivIC PF04977.10 gi|345005910|ref|YP_004808763.1| - 0.36 10.3 8.3 0.86 9.1 5.4 1.8 1 1 0 1 1 1 0 Septum formation initiator Daxx PF03344.10 gi|345005910|ref|YP_004808763.1| - 0.4 9.1 6.8 0.6 8.5 4.7 1.2 1 0 0 1 1 1 0 Daxx Family Sipho_Gp157 PF05565.6 gi|345005910|ref|YP_004808763.1| - 0.45 10.0 3.1 0.72 9.4 2.1 1.2 1 0 0 1 1 1 0 Siphovirus Gp157 Synaptobrevin PF00957.16 gi|345005910|ref|YP_004808763.1| - 0.46 10.1 2.2 0.84 9.2 1.5 1.3 1 0 0 1 1 1 0 Synaptobrevin ADIP PF11559.3 gi|345005910|ref|YP_004808763.1| - 0.56 10.0 7.1 1.2 9.0 4.9 1.5 1 0 0 1 1 1 0 Afadin- and alpha -actinin-Binding DUF2205 PF10224.4 gi|345005910|ref|YP_004808763.1| - 0.6 9.7 6.0 1.2 8.7 4.2 1.4 1 0 0 1 1 1 0 Predicted coiled-coil protein (DUF2205) TBPIP PF07106.8 gi|345005910|ref|YP_004808763.1| - 0.73 9.3 5.0 0.41 10.1 2.0 1.7 2 0 0 2 2 1 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) EMP24_GP25L PF01105.19 gi|345005910|ref|YP_004808763.1| - 0.82 9.3 6.0 6.1 6.5 2.9 2.1 2 0 0 2 2 2 0 emp24/gp25L/p24 family/GOLD Prefoldin_2 PF01920.15 gi|345005910|ref|YP_004808763.1| - 0.85 9.4 8.1 1.6 8.4 5.6 1.4 1 0 0 1 1 1 0 Prefoldin subunit bZIP_2 PF07716.10 gi|345005910|ref|YP_004808763.1| - 0.86 9.4 14.5 0.8 9.5 6.4 2.6 1 1 1 2 2 2 0 Basic region leucine zipper APG6 PF04111.7 gi|345005910|ref|YP_004808763.1| - 2.2 7.2 7.1 3.5 6.5 4.9 1.2 1 0 0 1 1 1 0 Autophagy protein Apg6 NYD-SP28_assoc PF14775.1 gi|345005910|ref|YP_004808763.1| - 3.1 7.5 9.2 5.8 6.6 5.2 2.3 1 1 1 2 2 2 0 Sperm tail C-terminal domain TSC22 PF01166.13 gi|345005910|ref|YP_004808763.1| - 3.5 7.6 14.5 28 4.7 8.0 3.2 2 1 0 2 2 2 0 TSC-22/dip/bun family NOG1 PF06858.9 gi|345005911|ref|YP_004808764.1| - 1.2e-22 79.4 0.0 2.5e-22 78.5 0.0 1.5 1 0 0 1 1 1 1 Nucleolar GTP-binding protein 1 (NOG1) MMR_HSR1 PF01926.18 gi|345005911|ref|YP_004808764.1| - 4.8e-20 71.6 0.0 9.2e-20 70.7 0.0 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.13 gi|345005911|ref|YP_004808764.1| - 1.5e-13 50.2 0.0 2.4e-13 49.6 0.0 1.3 1 0 0 1 1 1 1 Ferrous iron transport protein B Dynamin_N PF00350.18 gi|345005911|ref|YP_004808764.1| - 2e-06 27.7 0.2 0.052 13.3 0.0 2.9 2 1 1 3 3 3 2 Dynamin family Miro PF08477.8 gi|345005911|ref|YP_004808764.1| - 2e-05 25.0 0.0 3.9e-05 24.1 0.0 1.5 1 0 0 1 1 1 1 Miro-like protein GTP_EFTU PF00009.22 gi|345005911|ref|YP_004808764.1| - 8.6e-05 22.0 0.0 0.0022 17.4 0.0 2.5 1 1 1 2 2 2 1 Elongation factor Tu GTP binding domain AIG1 PF04548.11 gi|345005911|ref|YP_004808764.1| - 0.00038 19.6 0.0 0.00059 19.0 0.0 1.4 1 0 0 1 1 1 1 AIG1 family AAA_16 PF13191.1 gi|345005911|ref|YP_004808764.1| - 0.011 15.7 0.0 0.097 12.6 0.0 2.3 1 1 2 3 3 3 0 AAA ATPase domain DUF258 PF03193.11 gi|345005911|ref|YP_004808764.1| - 0.014 14.6 0.0 0.034 13.3 0.0 1.6 1 1 0 1 1 1 0 Protein of unknown function, DUF258 MobB PF03205.9 gi|345005911|ref|YP_004808764.1| - 0.023 14.4 0.0 0.056 13.1 0.0 1.6 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_22 PF13401.1 gi|345005911|ref|YP_004808764.1| - 0.13 12.3 0.1 2.4 8.3 0.0 2.7 1 1 1 2 2 2 0 AAA domain SIMPL PF04402.9 gi|345005912|ref|YP_004808765.1| - 1.8e-39 135.8 12.9 2.2e-39 135.5 9.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF541) LPAM_1 PF08139.7 gi|345005912|ref|YP_004808765.1| - 0.32 11.2 1.7 0.58 10.4 1.2 1.5 1 0 0 1 1 1 0 Prokaryotic membrane lipoprotein lipid attachment site DUF389 PF04087.9 gi|345005913|ref|YP_004808766.1| - 6.3e-35 120.1 18.2 6.3e-35 120.1 12.6 1.9 2 0 0 2 2 2 1 Domain of unknown function (DUF389) TrkA_C PF02080.16 gi|345005914|ref|YP_004808767.1| - 7.1e-14 51.1 0.1 2e-13 49.7 0.0 1.8 2 0 0 2 2 2 1 TrkA-C domain Na_H_Exchanger PF00999.16 gi|345005915|ref|YP_004808768.1| - 1e-49 169.0 49.9 1.3e-49 168.8 34.6 1.0 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family PRC PF05239.11 gi|345005916|ref|YP_004808769.1| - 0.0045 16.8 1.1 0.0068 16.2 0.8 1.6 1 1 0 1 1 1 1 PRC-barrel domain MMR_HSR1 PF01926.18 gi|345005917|ref|YP_004808770.1| - 1.1e-17 64.0 0.0 1.8e-17 63.3 0.0 1.3 1 1 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.13 gi|345005917|ref|YP_004808770.1| - 2.2e-13 49.7 0.2 3.5e-12 45.8 0.1 2.0 1 1 0 1 1 1 1 Ferrous iron transport protein B GTP_EFTU PF00009.22 gi|345005917|ref|YP_004808770.1| - 6.7e-07 28.9 0.2 0.00018 21.0 0.0 2.3 2 1 0 2 2 2 1 Elongation factor Tu GTP binding domain Dynamin_N PF00350.18 gi|345005917|ref|YP_004808770.1| - 0.0008 19.2 0.0 0.0036 17.1 0.0 1.9 1 1 0 1 1 1 1 Dynamin family TIP49 PF06068.8 gi|345005917|ref|YP_004808770.1| - 0.0016 17.2 0.3 0.0031 16.3 0.2 1.3 1 0 0 1 1 1 1 TIP49 C-terminus ABC_tran PF00005.22 gi|345005917|ref|YP_004808770.1| - 0.0022 18.3 0.1 0.0047 17.2 0.0 1.7 1 1 0 1 1 1 1 ABC transporter MobB PF03205.9 gi|345005917|ref|YP_004808770.1| - 0.0034 17.0 0.1 0.011 15.4 0.0 1.8 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B DUF258 PF03193.11 gi|345005917|ref|YP_004808770.1| - 0.0042 16.2 0.0 0.0057 15.8 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AIG1 PF04548.11 gi|345005917|ref|YP_004808770.1| - 0.0051 15.9 0.0 0.0061 15.7 0.0 1.3 1 0 0 1 1 1 1 AIG1 family Ras PF00071.17 gi|345005917|ref|YP_004808770.1| - 0.0064 15.8 0.0 0.015 14.7 0.0 1.6 1 0 0 1 1 1 1 Ras family AAA_17 PF13207.1 gi|345005917|ref|YP_004808770.1| - 0.0093 16.7 0.2 0.032 15.0 0.1 1.9 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|345005917|ref|YP_004808770.1| - 0.011 16.0 0.0 0.022 15.0 0.0 1.5 1 1 0 1 1 1 0 AAA domain Miro PF08477.8 gi|345005917|ref|YP_004808770.1| - 0.021 15.3 0.0 0.034 14.6 0.0 1.5 1 1 0 1 1 1 0 Miro-like protein Guanylate_kin PF00625.16 gi|345005917|ref|YP_004808770.1| - 0.029 13.8 0.0 0.049 13.0 0.0 1.3 1 0 0 1 1 1 0 Guanylate kinase Arf PF00025.16 gi|345005917|ref|YP_004808770.1| - 0.03 13.5 0.0 0.26 10.5 0.0 2.0 2 0 0 2 2 2 0 ADP-ribosylation factor family AAA_10 PF12846.2 gi|345005917|ref|YP_004808770.1| - 0.035 13.5 0.1 0.068 12.5 0.0 1.5 1 1 0 1 1 1 0 AAA-like domain AAA_29 PF13555.1 gi|345005917|ref|YP_004808770.1| - 0.045 13.2 0.0 0.085 12.4 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain RHH_1 PF01402.16 gi|345005917|ref|YP_004808770.1| - 0.055 13.3 1.1 1.1 9.3 0.4 2.4 2 0 0 2 2 2 0 Ribbon-helix-helix protein, copG family PduV-EutP PF10662.4 gi|345005917|ref|YP_004808770.1| - 0.063 12.7 0.1 0.2 11.1 0.0 1.7 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation AAA_25 PF13481.1 gi|345005917|ref|YP_004808770.1| - 0.077 12.3 0.1 0.31 10.3 0.1 2.0 1 1 0 1 1 1 0 AAA domain RNA_helicase PF00910.17 gi|345005917|ref|YP_004808770.1| - 0.14 12.3 0.0 0.26 11.4 0.0 1.5 1 0 0 1 1 1 0 RNA helicase AAA_22 PF13401.1 gi|345005917|ref|YP_004808770.1| - 0.16 12.1 0.1 0.36 10.9 0.0 1.8 1 1 0 1 1 1 0 AAA domain MutS_V PF00488.16 gi|345005918|ref|YP_004808771.1| - 1.2e-90 303.0 0.0 2.2e-90 302.1 0.0 1.4 1 0 0 1 1 1 1 MutS domain V MutS_III PF05192.13 gi|345005918|ref|YP_004808771.1| - 1.5e-43 149.0 4.6 3e-43 148.0 3.2 1.5 1 0 0 1 1 1 1 MutS domain III MutS_I PF01624.15 gi|345005918|ref|YP_004808771.1| - 8e-32 109.6 0.0 3.1e-31 107.7 0.0 1.9 2 0 0 2 2 2 1 MutS domain I MutS_IV PF05190.13 gi|345005918|ref|YP_004808771.1| - 1.2e-29 102.3 0.9 2e-29 101.6 0.1 1.9 2 0 0 2 2 2 1 MutS family domain IV MutS_II PF05188.12 gi|345005918|ref|YP_004808771.1| - 5.8e-11 42.5 0.0 2.9e-10 40.3 0.0 2.1 1 1 0 1 1 1 1 MutS domain II AAA_25 PF13481.1 gi|345005918|ref|YP_004808771.1| - 0.0088 15.4 0.0 0.032 13.6 0.0 2.0 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|345005918|ref|YP_004808771.1| - 0.01 15.3 0.0 0.023 14.2 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain DZR PF12773.2 gi|345005919|ref|YP_004808772.1| - 0.023 14.4 0.9 0.044 13.5 0.6 1.5 1 1 0 1 1 1 0 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|345005919|ref|YP_004808772.1| - 0.029 13.5 3.0 0.29 10.4 2.1 2.2 1 1 0 1 1 1 0 zinc-ribbon domain PhnA_Zn_Ribbon PF08274.7 gi|345005919|ref|YP_004808772.1| - 0.09 12.5 0.0 0.15 11.8 0.0 1.5 1 1 0 1 1 1 0 PhnA Zinc-Ribbon PGM_PMM_II PF02879.11 gi|345005919|ref|YP_004808772.1| - 0.13 12.5 0.5 0.18 12.1 0.3 1.2 1 0 0 1 1 1 0 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II Nudix_N_2 PF14803.1 gi|345005919|ref|YP_004808772.1| - 0.17 11.5 3.5 0.25 11.0 1.0 2.2 2 1 0 2 2 2 0 Nudix N-terminal Rubredoxin PF00301.15 gi|345005919|ref|YP_004808772.1| - 0.46 10.3 5.0 8.2 6.3 0.1 2.4 1 1 1 2 2 2 0 Rubredoxin Prok-RING_1 PF14446.1 gi|345005919|ref|YP_004808772.1| - 0.49 10.1 4.0 5 6.9 2.8 2.0 1 1 0 1 1 1 0 Prokaryotic RING finger family 1 Zn-ribbon_8 PF09723.5 gi|345005919|ref|YP_004808772.1| - 0.61 10.0 4.4 5.2 7.1 2.8 2.3 1 1 1 2 2 2 0 Zinc ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|345005919|ref|YP_004808772.1| - 1.2 9.0 3.9 8.2 6.3 0.3 2.3 1 1 0 1 1 1 0 Transposase zinc-ribbon domain zf-RING_3 PF14369.1 gi|345005919|ref|YP_004808772.1| - 2.6 8.1 4.8 20 5.2 2.8 2.4 1 1 1 2 2 2 0 zinc-finger Radical_SAM PF04055.16 gi|345005921|ref|YP_004808774.1| - 7.3e-25 88.0 0.1 2.1e-24 86.5 0.0 1.8 2 0 0 2 2 2 1 Radical SAM superfamily UPF0004 PF00919.15 gi|345005921|ref|YP_004808774.1| - 7.6e-19 67.3 0.1 1.8e-18 66.1 0.1 1.6 1 0 0 1 1 1 1 Uncharacterized protein family UPF0004 TRAM PF01938.15 gi|345005921|ref|YP_004808774.1| - 0.00019 21.1 0.2 0.00061 19.5 0.1 1.9 1 0 0 1 1 1 1 TRAM domain Herpes_IE2_3 PF03361.9 gi|345005921|ref|YP_004808774.1| - 0.03 13.6 0.0 0.057 12.7 0.0 1.3 1 0 0 1 1 1 0 Herpes virus intermediate/early protein 2/3 RPE65 PF03055.10 gi|345005923|ref|YP_004808776.1| - 2.1e-111 372.8 0.0 2.4e-111 372.6 0.0 1.0 1 0 0 1 1 1 1 Retinal pigment epithelial membrane protein Cation_efflux PF01545.16 gi|345005924|ref|YP_004808777.1| - 3e-57 193.8 0.1 3.3e-57 193.7 0.1 1.0 1 0 0 1 1 1 1 Cation efflux family HIT PF01230.18 gi|345005925|ref|YP_004808778.1| - 4.5e-12 46.3 0.0 8.6e-12 45.4 0.0 1.4 2 0 0 2 2 2 1 HIT domain CwfJ_C_1 PF04677.10 gi|345005925|ref|YP_004808778.1| - 0.00027 20.5 0.0 0.00042 19.9 0.0 1.2 1 0 0 1 1 1 1 Protein similar to CwfJ C-terminus 1 DcpS_C PF11969.3 gi|345005925|ref|YP_004808778.1| - 0.01 16.0 0.0 0.016 15.4 0.0 1.4 1 0 0 1 1 1 1 Scavenger mRNA decapping enzyme C-term binding RHH_1 PF01402.16 gi|345005926|ref|YP_004808779.1| - 0.00064 19.5 0.3 0.0024 17.6 0.0 2.2 2 1 0 2 2 2 1 Ribbon-helix-helix protein, copG family DUF2191 PF09957.4 gi|345005926|ref|YP_004808779.1| - 0.0056 16.4 0.7 0.0056 16.4 0.5 2.5 1 1 1 2 2 2 1 Uncharacterized protein conserved in bacteria (DUF2191) DUF1160 PF06648.6 gi|345005926|ref|YP_004808779.1| - 0.0093 15.7 0.1 0.012 15.4 0.1 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1160) DUF2653 PF10850.3 gi|345005926|ref|YP_004808779.1| - 0.011 16.0 0.3 0.059 13.6 0.2 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF2653) NA37 PF04245.8 gi|345005926|ref|YP_004808779.1| - 0.034 13.5 0.9 0.04 13.2 0.6 1.1 1 0 0 1 1 1 0 37-kD nucleoid-associated bacterial protein UPF0175 PF03683.8 gi|345005926|ref|YP_004808779.1| - 0.061 12.8 1.0 0.11 12.0 0.3 1.7 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0175) PSK_trans_fac PF07704.6 gi|345005926|ref|YP_004808779.1| - 0.07 13.8 1.8 0.14 12.8 1.2 1.6 1 1 0 1 1 1 0 Rv0623-like transcription factor PIN_3 PF13470.1 gi|345005927|ref|YP_004808780.1| - 0.012 16.2 0.6 0.028 15.1 0.4 1.7 1 0 0 1 1 1 0 PIN domain PIN PF01850.16 gi|345005927|ref|YP_004808780.1| - 0.071 13.4 0.8 0.21 11.9 0.6 1.8 1 1 0 1 1 1 0 PIN domain HTH_29 PF13551.1 gi|345005928|ref|YP_004808781.1| - 4.7e-24 84.6 1.4 3.1e-23 82.0 0.2 2.2 2 0 0 2 2 2 1 Winged helix-turn helix DDE_3 PF13358.1 gi|345005928|ref|YP_004808781.1| - 7.6e-18 64.6 0.2 1.6e-17 63.6 0.0 1.6 2 0 0 2 2 2 1 DDE superfamily endonuclease HTH_23 PF13384.1 gi|345005928|ref|YP_004808781.1| - 2.5e-12 46.0 1.3 4e-11 42.1 0.2 2.9 3 0 0 3 3 3 1 Homeodomain-like domain HTH_32 PF13565.1 gi|345005928|ref|YP_004808781.1| - 6e-12 46.1 0.5 2.2e-11 44.3 0.3 2.0 1 0 0 1 1 1 1 Homeodomain-like domain HTH_28 PF13518.1 gi|345005928|ref|YP_004808781.1| - 4.6e-05 23.3 0.2 0.00029 20.7 0.0 2.2 2 0 0 2 2 2 1 Helix-turn-helix domain rve PF00665.21 gi|345005928|ref|YP_004808781.1| - 0.014 15.4 0.0 0.026 14.6 0.0 1.5 1 0 0 1 1 1 0 Integrase core domain HTH_Tnp_Tc3_2 PF01498.13 gi|345005928|ref|YP_004808781.1| - 0.083 12.9 0.3 0.21 11.6 0.0 1.8 2 0 0 2 2 2 0 Transposase GTP_EFTU PF00009.22 gi|345005929|ref|YP_004808782.1| - 1e-32 113.1 0.0 3.6e-32 111.3 0.0 1.9 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain IF-2 PF11987.3 gi|345005929|ref|YP_004808782.1| - 8e-25 86.8 1.2 1.6e-24 85.8 0.8 1.5 1 0 0 1 1 1 1 Translation-initiation factor 2 GTP_EFTU_D2 PF03144.20 gi|345005929|ref|YP_004808782.1| - 1.3e-09 37.9 9.2 4.6e-08 33.0 0.1 3.5 3 0 0 3 3 3 2 Elongation factor Tu domain 2 GTP_EFTU_D4 PF14578.1 gi|345005929|ref|YP_004808782.1| - 2.4e-09 36.6 0.1 6.9e-09 35.2 0.1 1.8 1 0 0 1 1 1 1 Elongation factor Tu domain 4 MMR_HSR1 PF01926.18 gi|345005929|ref|YP_004808782.1| - 3.2e-07 30.3 0.0 2.2e-06 27.6 0.0 2.2 2 0 0 2 2 2 1 50S ribosome-binding GTPase Dynamin_N PF00350.18 gi|345005929|ref|YP_004808782.1| - 0.0058 16.4 0.8 0.26 11.0 0.0 2.8 2 1 0 3 3 3 1 Dynamin family Miro PF08477.8 gi|345005929|ref|YP_004808782.1| - 0.0075 16.7 0.0 0.018 15.5 0.0 1.6 1 0 0 1 1 1 1 Miro-like protein ATP_bind_1 PF03029.12 gi|345005929|ref|YP_004808782.1| - 0.014 14.9 0.0 0.031 13.8 0.0 1.7 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein MobB PF03205.9 gi|345005929|ref|YP_004808782.1| - 0.035 13.8 0.1 0.099 12.3 0.0 1.8 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B PduV-EutP PF10662.4 gi|345005929|ref|YP_004808782.1| - 0.14 11.6 0.0 3.3 7.1 0.0 2.8 3 0 0 3 3 3 0 Ethanolamine utilisation - propanediol utilisation PRC PF05239.11 gi|345005930|ref|YP_004808783.1| - 8.5e-10 38.3 0.1 1.1e-09 37.9 0.0 1.2 1 0 0 1 1 1 1 PRC-barrel domain UPF0278 PF08745.6 gi|345005931|ref|YP_004808784.1| - 2.2e-05 23.8 0.3 3.5e-05 23.1 0.1 1.5 2 0 0 2 2 2 1 UPF0278 family PIN PF01850.16 gi|345005931|ref|YP_004808784.1| - 8.6e-05 22.8 1.3 0.0078 16.5 0.3 2.1 1 1 1 2 2 2 1 PIN domain PIN_4 PF13638.1 gi|345005931|ref|YP_004808784.1| - 0.0057 16.7 0.2 0.046 13.8 0.1 2.0 1 1 0 1 1 1 1 PIN domain DZR PF12773.2 gi|345005931|ref|YP_004808784.1| - 0.0085 15.8 1.3 0.014 15.1 0.9 1.3 1 0 0 1 1 1 1 Double zinc ribbon HypA PF01155.14 gi|345005931|ref|YP_004808784.1| - 0.02 14.5 1.0 0.058 13.0 0.7 1.8 1 1 0 1 1 1 0 Hydrogenase expression/synthesis hypA family zf-C3HC4_3 PF13920.1 gi|345005931|ref|YP_004808784.1| - 0.02 14.5 0.4 0.029 14.0 0.3 1.2 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) Zn-ribbon_8 PF09723.5 gi|345005931|ref|YP_004808784.1| - 0.032 14.2 4.4 0.31 11.0 3.1 2.2 1 1 0 1 1 1 0 Zinc ribbon domain DUF4411 PF14367.1 gi|345005931|ref|YP_004808784.1| - 0.041 13.5 0.1 0.41 10.3 0.0 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4411) NOB1_Zn_bind PF08772.6 gi|345005931|ref|YP_004808784.1| - 0.053 13.3 0.5 0.09 12.6 0.4 1.4 1 0 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like Mut7-C PF01927.11 gi|345005931|ref|YP_004808784.1| - 0.084 12.8 0.0 0.13 12.2 0.0 1.3 1 0 0 1 1 1 0 Mut7-C RNAse domain Prok-RING_1 PF14446.1 gi|345005931|ref|YP_004808784.1| - 0.088 12.5 0.6 0.15 11.7 0.4 1.4 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 Rad50_zn_hook PF04423.9 gi|345005931|ref|YP_004808784.1| - 0.12 11.8 6.7 0.29 10.6 0.4 2.8 2 1 1 3 3 3 0 Rad50 zinc hook motif zf-C2HC_2 PF13913.1 gi|345005931|ref|YP_004808784.1| - 0.17 11.5 6.9 0.2 11.3 0.2 2.3 1 1 1 2 2 2 0 zinc-finger of a C2HC-type zf-ribbon_3 PF13248.1 gi|345005931|ref|YP_004808784.1| - 0.26 10.5 1.8 0.44 9.8 1.3 1.4 1 0 0 1 1 1 0 zinc-ribbon domain zf-C2H2 PF00096.21 gi|345005931|ref|YP_004808784.1| - 0.61 10.5 2.4 7.8 7.0 0.1 2.3 2 0 0 2 2 2 0 Zinc finger, C2H2 type Abi PF02517.11 gi|345005932|ref|YP_004808785.1| - 2e-18 66.2 6.5 2e-18 66.2 4.5 2.0 2 1 0 2 2 2 1 CAAX protease self-immunity DctQ PF04290.7 gi|345005932|ref|YP_004808785.1| - 0.0096 15.6 2.4 0.0096 15.6 1.6 2.6 2 1 0 2 2 2 1 Tripartite ATP-independent periplasmic transporters, DctQ component PGI PF00342.14 gi|345005933|ref|YP_004808786.1| - 6.8e-50 169.8 0.0 9.4e-50 169.4 0.0 1.1 1 0 0 1 1 1 1 Phosphoglucose isomerase DDE_Tnp_IS1595 PF12762.2 gi|345005934|ref|YP_004808787.1| - 4.9e-15 55.6 0.3 1.9e-14 53.7 0.0 1.9 2 0 0 2 2 2 1 ISXO2-like transposase domain Zn_Tnp_IS1595 PF12760.2 gi|345005934|ref|YP_004808787.1| - 3.9e-05 23.3 0.9 8.6e-05 22.2 0.7 1.6 1 0 0 1 1 1 1 Transposase zinc-ribbon domain Zn_Tnp_IS1 PF03811.8 gi|345005934|ref|YP_004808787.1| - 0.54 9.8 4.8 0.31 10.5 1.4 2.1 2 0 0 2 2 2 0 InsA N-terminal domain MFS_1 PF07690.11 gi|345005935|ref|YP_004808788.1| - 1.7e-10 40.2 8.0 2e-10 39.9 5.5 1.1 1 0 0 1 1 1 1 Major Facilitator Superfamily MFS_2 PF13347.1 gi|345005935|ref|YP_004808788.1| - 0.00013 20.4 3.7 0.00016 20.2 2.6 1.1 1 0 0 1 1 1 1 MFS/sugar transport protein Sugar_tr PF00083.19 gi|345005935|ref|YP_004808788.1| - 0.00093 17.8 4.5 0.0012 17.5 3.1 1.2 1 0 0 1 1 1 1 Sugar (and other) transporter MFS_3 PF05977.8 gi|345005935|ref|YP_004808788.1| - 0.0028 15.8 0.2 0.0038 15.3 0.1 1.2 1 0 0 1 1 1 1 Transmembrane secretion effector MFS_1_like PF12832.2 gi|345005935|ref|YP_004808788.1| - 0.041 13.6 0.1 0.083 12.6 0.0 1.6 1 1 0 1 1 1 0 MFS_1 like family MFS_1 PF07690.11 gi|345005936|ref|YP_004808789.1| - 1.6e-13 50.1 26.5 2e-13 49.7 18.3 1.1 1 0 0 1 1 1 1 Major Facilitator Superfamily MFS_1_like PF12832.2 gi|345005936|ref|YP_004808789.1| - 3.3e-06 26.7 0.9 1.6e-05 24.6 0.1 2.3 2 0 0 2 2 2 1 MFS_1 like family Sugar_tr PF00083.19 gi|345005936|ref|YP_004808789.1| - 0.00064 18.4 9.7 0.00064 18.4 6.8 2.0 2 1 0 2 2 2 1 Sugar (and other) transporter DUF1228 PF06779.9 gi|345005936|ref|YP_004808789.1| - 0.019 14.9 0.6 0.066 13.2 0.4 1.9 1 0 0 1 1 1 0 Protein of unknown function (DUF1228) Bac_luciferase PF00296.15 gi|345005937|ref|YP_004808790.1| - 5.1e-70 236.0 1.1 6.8e-70 235.6 0.8 1.0 1 0 0 1 1 1 1 Luciferase-like monooxygenase FMN_red PF03358.10 gi|345005938|ref|YP_004808791.1| - 6.3e-36 123.1 0.0 8.6e-36 122.7 0.0 1.2 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.12 gi|345005938|ref|YP_004808791.1| - 7.6e-09 35.3 0.0 9.4e-09 35.0 0.0 1.1 1 0 0 1 1 1 1 Flavodoxin-like fold DuoxA PF10204.4 gi|345005940|ref|YP_004808793.1| - 0.0049 15.9 3.0 0.0066 15.5 2.1 1.1 1 0 0 1 1 1 1 Dual oxidase maturation factor Peptidase_M50 PF02163.17 gi|345005940|ref|YP_004808793.1| - 0.0094 14.9 2.3 0.013 14.4 1.6 1.2 1 0 0 1 1 1 1 Peptidase family M50 DUF4079 PF13301.1 gi|345005940|ref|YP_004808793.1| - 0.085 12.8 2.0 4.2 7.3 0.2 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF4079) OrfB_Zn_ribbon PF07282.6 gi|345005943|ref|YP_004808796.1| - 2.9e-19 68.5 1.1 6.3e-19 67.4 0.7 1.6 1 0 0 1 1 1 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.14 gi|345005943|ref|YP_004808796.1| - 8.2e-12 45.0 0.0 2.1e-11 43.6 0.0 1.6 2 0 0 2 2 2 1 Probable transposase 2-Hacid_dh_C PF02826.14 gi|345005944|ref|YP_004808797.1| - 2.3e-56 189.7 0.0 4.4e-56 188.8 0.0 1.5 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.25 gi|345005944|ref|YP_004808797.1| - 1.6e-10 40.5 0.0 1.8e-10 40.3 0.0 1.1 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain F420_oxidored PF03807.12 gi|345005944|ref|YP_004808797.1| - 3.6e-05 24.0 0.1 0.00088 19.6 0.0 2.4 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.10 gi|345005944|ref|YP_004808797.1| - 0.0041 16.9 0.0 0.0062 16.3 0.0 1.3 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase IlvN PF07991.7 gi|345005944|ref|YP_004808797.1| - 0.012 15.0 0.0 0.021 14.1 0.0 1.4 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, catalytic domain AdoHcyase_NAD PF00670.16 gi|345005944|ref|YP_004808797.1| - 0.019 14.8 0.0 0.032 14.0 0.0 1.3 1 0 0 1 1 1 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain TrkA_N PF02254.13 gi|345005944|ref|YP_004808797.1| - 0.13 12.2 0.2 1.8 8.6 0.0 2.6 3 0 0 3 3 3 0 TrkA-N domain SelR PF01641.13 gi|345005945|ref|YP_004808798.1| - 1.4e-50 170.1 0.3 1.5e-50 169.9 0.2 1.0 1 0 0 1 1 1 1 SelR domain Yippee-Mis18 PF03226.9 gi|345005945|ref|YP_004808798.1| - 0.011 15.7 0.6 0.038 14.0 0.4 1.8 1 1 0 1 1 1 0 Yippee zinc-binding/DNA-binding /Mis18, centromere assembly Ribosomal_L37e PF01907.14 gi|345005945|ref|YP_004808798.1| - 0.054 13.2 1.3 0.067 12.9 0.1 1.7 2 0 0 2 2 2 0 Ribosomal protein L37e HNH_5 PF14279.1 gi|345005945|ref|YP_004808798.1| - 0.11 12.5 1.6 0.18 11.8 0.0 2.1 3 0 0 3 3 3 0 HNH endonuclease DUF2757 PF10955.3 gi|345005945|ref|YP_004808798.1| - 0.11 12.6 0.6 0.19 11.9 0.4 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2757) DZR PF12773.2 gi|345005945|ref|YP_004808798.1| - 0.31 10.8 3.3 6.3 6.6 2.3 2.5 1 1 0 1 1 1 0 Double zinc ribbon Lar_restr_allev PF14354.1 gi|345005945|ref|YP_004808798.1| - 0.67 10.3 3.2 8.9 6.7 2.2 2.3 1 1 0 1 1 1 0 Restriction alleviation protein Lar TF_Zn_Ribbon PF08271.7 gi|345005945|ref|YP_004808798.1| - 2.8 7.3 8.5 3.7 6.9 0.7 2.8 3 0 0 3 3 3 0 TFIIB zinc-binding RRN7 PF11781.3 gi|345005945|ref|YP_004808798.1| - 2.9 7.4 5.2 9.7 5.7 0.2 2.7 3 0 0 3 3 3 0 RNA polymerase I-specific transcription initiation factor Rrn7 zf-Mss51 PF13824.1 gi|345005945|ref|YP_004808798.1| - 7.9 6.4 6.8 6.7 6.6 0.1 3.0 2 1 1 3 3 3 0 Zinc-finger of mitochondrial splicing suppressor 51 HAD_2 PF13419.1 gi|345005946|ref|YP_004808799.1| - 3.5e-19 69.6 0.2 4.3e-19 69.4 0.1 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|345005946|ref|YP_004808799.1| - 8.6e-13 47.8 0.1 1.7e-12 46.8 0.1 1.5 1 0 0 1 1 1 1 HAD-hyrolase-like Hydrolase PF00702.21 gi|345005946|ref|YP_004808799.1| - 9.6e-07 29.4 1.1 0.00051 20.5 0.0 2.2 1 1 0 2 2 2 2 haloacid dehalogenase-like hydrolase TRAP_alpha PF03896.11 gi|345005947|ref|YP_004808800.1| - 0.0044 16.0 0.0 0.005 15.8 0.0 1.0 1 0 0 1 1 1 1 Translocon-associated protein (TRAP), alpha subunit Rieske PF00355.21 gi|345005948|ref|YP_004808801.1| - 9.1e-13 47.6 0.0 1.8e-12 46.6 0.0 1.5 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain Rieske_2 PF13806.1 gi|345005948|ref|YP_004808801.1| - 6.2e-09 35.5 0.0 1.2e-08 34.5 0.0 1.5 1 0 0 1 1 1 1 Rieske-like [2Fe-2S] domain Exotox-A_target PF09102.5 gi|345005948|ref|YP_004808801.1| - 0.063 12.7 0.0 0.16 11.4 0.0 1.7 1 0 0 1 1 1 0 Exotoxin A, targeting PhageMin_Tail PF10145.4 gi|345005948|ref|YP_004808801.1| - 0.43 10.1 3.0 1.9 8.1 0.0 3.1 4 0 0 4 4 4 0 Phage-related minor tail protein CPSase_sm_chain PF00988.17 gi|345005949|ref|YP_004808802.1| - 3.5e-36 123.5 0.0 1.1e-35 122.0 0.0 1.8 2 0 0 2 2 2 1 Carbamoyl-phosphate synthase small chain, CPSase domain GATase PF00117.23 gi|345005949|ref|YP_004808802.1| - 5.9e-33 113.9 0.0 7.8e-33 113.5 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|345005949|ref|YP_004808802.1| - 6e-05 22.5 0.1 0.021 14.2 0.1 2.3 1 1 1 2 2 2 2 Peptidase C26 DJ-1_PfpI PF01965.19 gi|345005949|ref|YP_004808802.1| - 0.00068 19.1 0.1 0.0016 17.8 0.1 1.7 1 0 0 1 1 1 1 DJ-1/PfpI family Peripla_BP_2 PF01497.13 gi|345005949|ref|YP_004808802.1| - 0.068 12.2 0.2 0.13 11.3 0.0 1.6 2 0 0 2 2 2 0 Periplasmic binding protein HTH_AsnC-type PF13404.1 gi|345005950|ref|YP_004808803.1| - 2.9e-17 61.8 0.2 1.1e-16 60.0 0.1 1.9 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.1 gi|345005950|ref|YP_004808803.1| - 5.5e-15 54.4 0.1 1.2e-14 53.3 0.0 1.7 2 0 0 2 2 1 1 Winged helix-turn-helix DNA-binding AsnC_trans_reg PF01037.16 gi|345005950|ref|YP_004808803.1| - 4.9e-11 42.1 1.0 8.3e-11 41.4 0.7 1.4 1 0 0 1 1 1 1 AsnC family Sigma70_r4_2 PF08281.7 gi|345005950|ref|YP_004808803.1| - 1.5e-05 24.3 0.2 0.00015 21.1 0.0 2.3 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_20 PF12840.2 gi|345005950|ref|YP_004808803.1| - 1.6e-05 24.6 0.0 2.6e-05 23.9 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|345005950|ref|YP_004808803.1| - 0.00011 21.8 0.2 0.00026 20.6 0.0 1.7 2 0 0 2 2 2 1 MarR family HTH_IclR PF09339.5 gi|345005950|ref|YP_004808803.1| - 0.00046 19.7 0.0 0.00087 18.8 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain KorB PF08535.5 gi|345005950|ref|YP_004808803.1| - 0.00054 20.0 0.1 0.29 11.3 0.0 2.1 1 1 1 2 2 2 1 KorB domain Sigma70_r4 PF04545.11 gi|345005950|ref|YP_004808803.1| - 0.00058 19.1 0.7 0.0021 17.3 0.2 2.0 2 0 0 2 2 2 1 Sigma-70, region 4 MarR PF01047.17 gi|345005950|ref|YP_004808803.1| - 0.0016 18.0 0.0 0.0041 16.7 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.1 gi|345005950|ref|YP_004808803.1| - 0.0024 18.1 0.0 0.0097 16.2 0.0 1.9 1 1 1 2 2 2 1 Winged helix DNA-binding domain HTH_Tnp_ISL3 PF13542.1 gi|345005950|ref|YP_004808803.1| - 0.0038 16.3 0.0 0.01 14.9 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 HTH_DeoR PF08220.7 gi|345005950|ref|YP_004808803.1| - 0.0044 16.5 0.1 0.0087 15.5 0.0 1.5 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain GYD PF08734.6 gi|345005950|ref|YP_004808803.1| - 0.0044 16.7 0.3 0.017 14.8 0.0 2.0 1 1 1 2 2 2 1 GYD domain HTH_11 PF08279.7 gi|345005950|ref|YP_004808803.1| - 0.0056 16.3 0.0 0.012 15.2 0.0 1.5 1 0 0 1 1 1 1 HTH domain HTH_23 PF13384.1 gi|345005950|ref|YP_004808803.1| - 0.0073 15.9 0.0 0.013 15.1 0.0 1.5 1 0 0 1 1 1 1 Homeodomain-like domain TrmB PF01978.14 gi|345005950|ref|YP_004808803.1| - 0.008 15.8 0.1 0.018 14.7 0.0 1.6 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_Mga PF08280.6 gi|345005950|ref|YP_004808803.1| - 0.027 14.2 0.0 0.044 13.5 0.0 1.3 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain DUF746 PF05344.6 gi|345005950|ref|YP_004808803.1| - 0.031 13.8 0.1 0.28 10.7 0.0 2.1 2 0 0 2 2 2 0 Domain of Unknown Function (DUF746) HrcA_DNA-bdg PF03444.10 gi|345005950|ref|YP_004808803.1| - 0.037 13.4 0.1 0.091 12.2 0.0 1.7 1 1 0 1 1 1 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding HTH_29 PF13551.1 gi|345005950|ref|YP_004808803.1| - 0.055 13.6 0.2 0.22 11.7 0.0 1.9 2 1 0 2 2 2 0 Winged helix-turn helix HTH_28 PF13518.1 gi|345005950|ref|YP_004808803.1| - 0.071 13.1 0.0 0.15 12.0 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_38 PF13936.1 gi|345005950|ref|YP_004808803.1| - 0.091 12.3 0.1 0.18 11.3 0.1 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain NUDIX PF00293.23 gi|345005951|ref|YP_004808804.1| - 8.8e-11 41.5 0.8 1.1e-10 41.2 0.5 1.1 1 0 0 1 1 1 1 NUDIX domain NUDIX_4 PF14815.1 gi|345005951|ref|YP_004808804.1| - 0.014 14.8 0.1 0.025 13.9 0.1 1.6 1 1 0 1 1 1 0 NUDIX domain PAS_4 PF08448.5 gi|345005952|ref|YP_004808805.1| - 8.7e-24 83.6 3.8 3.9e-14 52.6 0.2 3.0 2 0 0 2 2 2 2 PAS fold HATPase_c PF02518.21 gi|345005952|ref|YP_004808805.1| - 1.1e-20 73.3 0.1 2.5e-20 72.2 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.1 gi|345005952|ref|YP_004808805.1| - 1.6e-16 60.5 0.0 5e-11 42.9 0.0 2.8 2 0 0 2 2 2 2 PAS domain HisKA PF00512.20 gi|345005952|ref|YP_004808805.1| - 6e-13 48.5 0.3 6e-13 48.5 0.2 4.3 4 0 0 4 4 4 1 His Kinase A (phospho-acceptor) domain PAS PF00989.19 gi|345005952|ref|YP_004808805.1| - 6.1e-13 48.5 0.1 7.1e-07 29.0 0.0 3.7 4 0 0 4 4 4 2 PAS fold GAF PF01590.21 gi|345005952|ref|YP_004808805.1| - 2.2e-10 40.8 0.4 8.6e-10 38.9 0.1 2.2 2 0 0 2 2 2 1 GAF domain PAS_8 PF13188.1 gi|345005952|ref|YP_004808805.1| - 2.1e-06 27.3 0.1 0.0074 16.1 0.0 3.0 2 0 0 2 2 2 2 PAS domain GAF_2 PF13185.1 gi|345005952|ref|YP_004808805.1| - 3.3e-06 27.6 4.4 6.2e-06 26.7 0.1 3.2 3 1 0 3 3 3 1 GAF domain GAF_3 PF13492.1 gi|345005952|ref|YP_004808805.1| - 6.4e-06 26.2 0.1 1.5e-05 25.0 0.0 1.6 1 0 0 1 1 1 1 GAF domain HATPase_c_2 PF13581.1 gi|345005952|ref|YP_004808805.1| - 1.2e-05 25.0 0.1 3.2e-05 23.7 0.1 1.7 1 1 0 1 1 1 1 Histidine kinase-like ATPase domain PAS_3 PF08447.6 gi|345005952|ref|YP_004808805.1| - 0.00095 19.2 0.0 0.0032 17.5 0.0 2.0 1 0 0 1 1 1 1 PAS fold PAS_7 PF12860.2 gi|345005952|ref|YP_004808805.1| - 0.014 15.3 0.5 5.5 7.0 0.0 3.6 3 1 0 3 3 2 0 PAS fold HATPase_c_3 PF13589.1 gi|345005952|ref|YP_004808805.1| - 0.016 14.8 0.0 0.036 13.7 0.0 1.5 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_5 PF14501.1 gi|345005952|ref|YP_004808805.1| - 0.15 11.8 0.0 0.4 10.4 0.0 1.8 1 0 0 1 1 1 0 GHKL domain ADH_zinc_N PF00107.21 gi|345005954|ref|YP_004808807.1| - 1.8e-36 124.5 0.3 2.7e-36 123.9 0.2 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_N PF08240.7 gi|345005954|ref|YP_004808807.1| - 3.7e-27 94.2 0.4 7.5e-27 93.2 0.3 1.5 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N_2 PF13602.1 gi|345005954|ref|YP_004808807.1| - 2e-21 77.1 0.0 4.8e-21 75.9 0.0 1.7 1 0 0 1 1 1 1 Zinc-binding dehydrogenase NAD_binding_10 PF13460.1 gi|345005954|ref|YP_004808807.1| - 0.00022 21.2 0.3 0.00033 20.7 0.2 1.3 1 0 0 1 1 1 1 NADH(P)-binding AlaDh_PNT_C PF01262.16 gi|345005954|ref|YP_004808807.1| - 0.0055 16.2 0.1 0.011 15.2 0.1 1.5 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain DapB_N PF01113.15 gi|345005954|ref|YP_004808807.1| - 0.012 15.5 0.4 0.026 14.4 0.3 1.5 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus Eno-Rase_NADH_b PF12242.3 gi|345005954|ref|YP_004808807.1| - 0.022 14.5 0.3 0.045 13.5 0.2 1.5 1 0 0 1 1 1 0 NAD(P)H binding domain of trans-2-enoyl-CoA reductase MoCF_biosynth PF00994.19 gi|345005955|ref|YP_004808808.1| - 2.6e-28 98.2 0.7 3.3e-28 97.8 0.5 1.1 1 0 0 1 1 1 1 Probable molybdopterin binding domain Herpes_US12 PF05363.7 gi|345005956|ref|YP_004808809.1| - 0.0098 16.3 0.4 0.028 14.9 0.0 2.0 2 0 0 2 2 2 1 Herpesvirus US12 family DUF2913 PF11140.3 gi|345005956|ref|YP_004808809.1| - 0.094 11.9 0.0 0.14 11.4 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2913) Bclx_interact PF08945.5 gi|345005957|ref|YP_004808810.1| - 0.12 11.9 0.4 0.22 11.1 0.3 1.4 1 0 0 1 1 1 0 Bcl-x interacting, BH3 domain UbiA PF01040.13 gi|345005958|ref|YP_004808811.1| - 1.4e-08 34.2 32.9 1.4e-08 34.2 22.8 2.4 1 1 1 2 2 2 1 UbiA prenyltransferase family FUSC-like PF12805.2 gi|345005958|ref|YP_004808811.1| - 0.024 13.5 0.1 0.024 13.5 0.1 2.7 3 0 0 3 3 3 0 FUSC-like inner membrane protein yccS PRC PF05239.11 gi|345005959|ref|YP_004808812.1| - 0.018 14.8 0.1 0.026 14.3 0.1 1.3 1 0 0 1 1 1 0 PRC-barrel domain DUF433 PF04255.9 gi|345005961|ref|YP_004808814.1| - 1.3e-11 43.7 0.2 1.9e-11 43.2 0.2 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF433) DUF4296 PF14129.1 gi|345005961|ref|YP_004808814.1| - 0.0018 18.4 0.0 0.0021 18.1 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4296) Glyco_trans_1_2 PF13524.1 gi|345005961|ref|YP_004808814.1| - 0.06 13.6 0.2 0.082 13.1 0.1 1.2 1 0 0 1 1 1 0 Glycosyl transferases group 1 AstE_AspA PF04952.9 gi|345005963|ref|YP_004808816.1| - 4.7e-34 117.6 0.0 6.6e-34 117.1 0.0 1.2 1 0 0 1 1 1 1 Succinylglutamate desuccinylase / Aspartoacylase family Peptidase_M14 PF00246.19 gi|345005963|ref|YP_004808816.1| - 1.5e-06 28.0 0.0 2.4e-06 27.3 0.0 1.4 1 0 0 1 1 1 1 Zinc carboxypeptidase Biotin_lipoyl PF00364.17 gi|345005963|ref|YP_004808816.1| - 0.054 13.1 0.1 0.12 12.0 0.1 1.6 1 0 0 1 1 1 0 Biotin-requiring enzyme TruB_N PF01509.13 gi|345005964|ref|YP_004808817.1| - 3e-21 76.1 0.1 2.3e-12 47.3 0.0 3.1 1 1 1 2 2 2 2 TruB family pseudouridylate synthase (N terminal domain) DKCLD PF08068.7 gi|345005964|ref|YP_004808817.1| - 3.1e-10 39.8 0.0 6.3e-10 38.8 0.0 1.5 1 0 0 1 1 1 1 DKCLD (NUC011) domain PUA PF01472.15 gi|345005964|ref|YP_004808817.1| - 3e-05 23.6 0.1 5.7e-05 22.7 0.1 1.5 1 0 0 1 1 1 1 PUA domain Cytidylate_kin2 PF13189.1 gi|345005965|ref|YP_004808818.1| - 3.3e-20 72.7 0.7 1.5e-18 67.3 0.5 2.2 1 1 0 1 1 1 1 Cytidylate kinase-like family AAA_18 PF13238.1 gi|345005965|ref|YP_004808818.1| - 5.3e-17 62.3 0.1 7.4e-17 61.8 0.1 1.2 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|345005965|ref|YP_004808818.1| - 1e-15 58.6 1.8 1.9e-15 57.7 1.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|345005965|ref|YP_004808818.1| - 8e-09 35.5 0.3 4.3e-08 33.1 0.2 1.9 1 1 0 1 1 1 1 AAA domain ADK PF00406.17 gi|345005965|ref|YP_004808818.1| - 1.4e-08 34.7 0.0 4.4e-08 33.1 0.0 1.8 1 1 1 2 2 2 1 Adenylate kinase SKI PF01202.17 gi|345005965|ref|YP_004808818.1| - 2.9e-06 27.2 0.1 3.9e-06 26.8 0.1 1.2 1 0 0 1 1 1 1 Shikimate kinase Thymidylate_kin PF02223.12 gi|345005965|ref|YP_004808818.1| - 0.0003 20.2 0.0 0.58 9.5 0.0 2.2 2 0 0 2 2 2 2 Thymidylate kinase AAA_28 PF13521.1 gi|345005965|ref|YP_004808818.1| - 0.00041 20.3 0.5 0.0017 18.3 0.3 2.1 1 1 0 1 1 1 1 AAA domain Cytidylate_kin PF02224.13 gi|345005965|ref|YP_004808818.1| - 0.00046 19.6 0.6 0.00063 19.2 0.4 1.2 1 0 0 1 1 1 1 Cytidylate kinase AAA PF00004.24 gi|345005965|ref|YP_004808818.1| - 0.0041 17.3 0.0 0.0071 16.5 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.1 gi|345005965|ref|YP_004808818.1| - 0.0043 17.1 0.0 0.0068 16.5 0.0 1.5 1 0 0 1 1 1 1 AAA domain KTI12 PF08433.5 gi|345005965|ref|YP_004808818.1| - 0.0077 15.4 0.0 0.011 14.9 0.0 1.4 1 0 0 1 1 1 1 Chromatin associated protein KTI12 AAA_19 PF13245.1 gi|345005965|ref|YP_004808818.1| - 0.016 14.9 0.0 0.04 13.6 0.0 1.7 1 0 0 1 1 1 0 Part of AAA domain AAA_16 PF13191.1 gi|345005965|ref|YP_004808818.1| - 0.017 15.0 1.1 0.09 12.7 0.7 2.0 1 1 0 1 1 1 0 AAA ATPase domain Zeta_toxin PF06414.7 gi|345005965|ref|YP_004808818.1| - 0.034 13.2 0.1 0.11 11.5 0.0 1.9 2 0 0 2 2 2 0 Zeta toxin AAA_5 PF07728.9 gi|345005965|ref|YP_004808818.1| - 0.052 13.2 0.0 0.13 11.9 0.0 1.6 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) RNA_helicase PF00910.17 gi|345005965|ref|YP_004808818.1| - 0.11 12.6 0.0 0.17 12.0 0.0 1.3 1 0 0 1 1 1 0 RNA helicase CoaE PF01121.15 gi|345005965|ref|YP_004808818.1| - 0.13 11.6 0.2 7.1 5.9 0.0 2.2 1 1 1 2 2 2 0 Dephospho-CoA kinase DUF2693 PF10902.3 gi|345005965|ref|YP_004808818.1| - 0.18 11.7 1.2 1.9 8.4 0.2 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF2693) Methyltransf_11 PF08241.7 gi|345005966|ref|YP_004808819.1| - 3.7e-11 43.3 0.0 6.4e-11 42.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|345005966|ref|YP_004808819.1| - 8.5e-07 29.0 0.1 1.8e-06 27.9 0.1 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|345005966|ref|YP_004808819.1| - 1.3e-05 25.6 0.0 2.5e-05 24.8 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.15 gi|345005966|ref|YP_004808819.1| - 0.00017 20.6 0.0 0.00027 20.0 0.0 1.3 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_25 PF13649.1 gi|345005966|ref|YP_004808819.1| - 0.00027 21.2 0.0 0.00043 20.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|345005966|ref|YP_004808819.1| - 0.0014 18.3 0.0 0.003 17.3 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|345005966|ref|YP_004808819.1| - 0.0057 17.1 0.0 0.0093 16.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.10 gi|345005966|ref|YP_004808819.1| - 0.039 13.3 0.0 0.097 12.0 0.0 1.6 1 0 0 1 1 1 0 Conserved hypothetical protein 95 Methyltransf_PK PF05891.7 gi|345005966|ref|YP_004808819.1| - 0.065 12.5 0.0 0.11 11.7 0.0 1.3 1 0 0 1 1 1 0 AdoMet dependent proline di-methyltransferase Ubie_methyltran PF01209.13 gi|345005966|ref|YP_004808819.1| - 0.099 11.7 0.0 0.15 11.1 0.0 1.2 1 0 0 1 1 1 0 ubiE/COQ5 methyltransferase family DNA_methylase PF00145.12 gi|345005966|ref|YP_004808819.1| - 0.12 11.4 0.0 0.18 10.9 0.0 1.2 1 0 0 1 1 1 0 C-5 cytosine-specific DNA methylase Methyltransf_24 PF13578.1 gi|345005966|ref|YP_004808819.1| - 0.13 13.1 0.0 0.26 12.1 0.0 1.6 1 0 0 1 1 1 0 Methyltransferase domain CMAS PF02353.15 gi|345005966|ref|YP_004808819.1| - 0.13 11.2 0.0 0.19 10.7 0.0 1.2 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase MoeA_N PF03453.12 gi|345005967|ref|YP_004808820.1| - 2.6e-41 140.6 3.6 4.2e-41 140.0 2.5 1.3 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.19 gi|345005967|ref|YP_004808820.1| - 1.2e-27 96.0 0.4 2.8e-27 94.8 0.1 1.8 2 1 0 2 2 2 1 Probable molybdopterin binding domain MoeA_C PF03454.10 gi|345005967|ref|YP_004808820.1| - 1.3e-19 69.9 0.3 1.3e-19 69.9 0.2 2.9 2 1 0 2 2 2 1 MoeA C-terminal region (domain IV) MoeA_N PF03453.12 gi|345005968|ref|YP_004808821.1| - 7.8e-48 161.8 1.7 1.4e-47 161.0 1.2 1.4 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.19 gi|345005968|ref|YP_004808821.1| - 3.1e-27 94.7 0.1 5.7e-27 93.8 0.1 1.5 1 0 0 1 1 1 1 Probable molybdopterin binding domain PBP_like PF12727.2 gi|345005968|ref|YP_004808821.1| - 1.4e-26 92.6 1.1 4.6e-26 90.9 0.1 2.3 2 1 0 2 2 2 1 PBP superfamily domain MoeA_C PF03454.10 gi|345005968|ref|YP_004808821.1| - 1.3e-16 60.2 0.8 5.2e-16 58.3 0.1 2.4 2 0 0 2 2 2 1 MoeA C-terminal region (domain IV) SBP_bac_11 PF13531.1 gi|345005968|ref|YP_004808821.1| - 0.037 13.6 0.0 0.092 12.3 0.0 1.7 1 0 0 1 1 1 0 Bacterial extracellular solute-binding protein T4_gp9_10 PF07880.6 gi|345005968|ref|YP_004808821.1| - 0.19 10.7 0.0 0.32 10.0 0.0 1.3 1 0 0 1 1 1 0 Bacteriophage T4 gp9/10-like protein Lipase_GDSL_2 PF13472.1 gi|345005969|ref|YP_004808822.1| - 7.4e-24 84.8 0.6 8.8e-24 84.6 0.4 1.1 1 0 0 1 1 1 1 GDSL-like Lipase/Acylhydrolase family Lipase_GDSL PF00657.17 gi|345005969|ref|YP_004808822.1| - 5.3e-11 42.7 0.0 6.8e-11 42.4 0.0 1.1 1 0 0 1 1 1 1 GDSL-like Lipase/Acylhydrolase TAT_signal PF10518.4 gi|345005969|ref|YP_004808822.1| - 0.15 12.1 5.6 0.51 10.4 3.9 2.0 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence HAD_2 PF13419.1 gi|345005970|ref|YP_004808823.1| - 2.3e-22 80.0 0.1 2.8e-22 79.7 0.1 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|345005970|ref|YP_004808823.1| - 1e-07 32.5 0.0 4.1e-06 27.3 0.0 2.0 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|345005970|ref|YP_004808823.1| - 0.0011 18.5 0.0 0.0035 17.0 0.1 1.7 2 0 0 2 2 2 1 HAD-hyrolase-like Pterin_4a PF01329.14 gi|345005972|ref|YP_004808825.1| - 5e-25 87.0 0.0 5.2e-25 87.0 0.0 1.0 1 0 0 1 1 1 1 Pterin 4 alpha carbinolamine dehydratase IF-2 PF11987.3 gi|345005972|ref|YP_004808825.1| - 0.046 13.6 0.0 0.066 13.0 0.0 1.2 1 0 0 1 1 1 0 Translation-initiation factor 2 TraD PF06412.6 gi|345005972|ref|YP_004808825.1| - 0.085 12.4 0.0 0.14 11.7 0.0 1.4 1 0 0 1 1 1 0 Conjugal transfer protein TraD GlutR_N PF05201.10 gi|345005973|ref|YP_004808826.1| - 3.8e-37 127.2 1.8 8.3e-37 126.1 1.3 1.6 1 0 0 1 1 1 1 Glutamyl-tRNAGlu reductase, N-terminal domain Shikimate_DH PF01488.15 gi|345005973|ref|YP_004808826.1| - 3.8e-29 101.5 0.5 7.2e-29 100.6 0.3 1.5 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase GlutR_dimer PF00745.15 gi|345005973|ref|YP_004808826.1| - 3e-20 72.0 0.7 8.5e-20 70.5 0.5 1.8 1 0 0 1 1 1 1 Glutamyl-tRNAGlu reductase, dimerisation domain 2-Hacid_dh_C PF02826.14 gi|345005973|ref|YP_004808826.1| - 1.8e-05 24.0 0.1 4.5e-05 22.6 0.1 1.7 1 1 1 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain F420_oxidored PF03807.12 gi|345005973|ref|YP_004808826.1| - 0.00082 19.7 0.8 0.00082 19.7 0.6 2.5 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_7 PF13241.1 gi|345005973|ref|YP_004808826.1| - 0.0098 16.1 0.4 0.026 14.7 0.3 1.7 1 0 0 1 1 1 1 Putative NAD(P)-binding THF_DHG_CYH_C PF02882.14 gi|345005973|ref|YP_004808826.1| - 0.014 14.5 2.9 0.024 13.7 1.1 2.1 2 1 0 2 2 2 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain ApbA PF02558.11 gi|345005973|ref|YP_004808826.1| - 0.02 14.3 0.1 0.045 13.1 0.1 1.7 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA AdoHcyase_NAD PF00670.16 gi|345005973|ref|YP_004808826.1| - 0.026 14.3 0.8 0.056 13.2 0.5 1.5 1 0 0 1 1 1 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain ThiF PF00899.16 gi|345005973|ref|YP_004808826.1| - 0.063 13.0 2.1 0.21 11.3 1.5 2.1 1 1 0 1 1 1 0 ThiF family TrkA_N PF02254.13 gi|345005973|ref|YP_004808826.1| - 2 8.4 7.1 0.29 11.1 1.0 2.5 2 1 1 3 3 3 0 TrkA-N domain FxsA PF04186.8 gi|345005975|ref|YP_004808828.1| - 3.2e-33 113.8 4.3 4.2e-33 113.5 3.0 1.1 1 0 0 1 1 1 1 FxsA cytoplasmic membrane protein SNARE_assoc PF09335.6 gi|345005975|ref|YP_004808828.1| - 0.025 14.7 0.8 0.038 14.1 0.5 1.2 1 0 0 1 1 1 0 SNARE associated Golgi protein MFS_1 PF07690.11 gi|345005975|ref|YP_004808828.1| - 0.044 12.4 0.8 0.05 12.3 0.6 1.1 1 0 0 1 1 1 0 Major Facilitator Superfamily RseC_MucC PF04246.7 gi|345005975|ref|YP_004808828.1| - 0.2 11.2 0.7 0.37 10.3 0.5 1.4 1 0 0 1 1 1 0 Positive regulator of sigma(E), RseC/MucC Pribosyltran PF00156.22 gi|345005976|ref|YP_004808829.1| - 4.1e-12 45.9 1.6 1.3e-11 44.3 0.7 2.0 2 1 0 2 2 2 1 Phosphoribosyl transferase domain UPRTase PF14681.1 gi|345005976|ref|YP_004808829.1| - 0.0064 15.7 0.1 0.0088 15.2 0.0 1.2 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase Peptidase_M20 PF01546.23 gi|345005977|ref|YP_004808830.1| - 2.7e-17 62.9 0.3 2.7e-17 62.9 0.2 1.7 2 1 0 2 2 2 1 Peptidase family M20/M25/M40 Peptidase_M28 PF04389.12 gi|345005977|ref|YP_004808830.1| - 5.1e-06 26.3 0.2 0.00011 22.0 0.1 2.4 2 0 0 2 2 2 1 Peptidase family M28 DUF307 PF03733.8 gi|345005979|ref|YP_004808832.1| - 1.7e-10 41.1 23.2 1.4e-05 25.3 4.0 2.1 2 0 0 2 2 2 2 Domain of unknown function (DUF307) TauE PF01925.14 gi|345005979|ref|YP_004808832.1| - 0.56 9.6 10.6 2 7.7 1.2 2.0 2 0 0 2 2 2 0 Sulfite exporter TauE/SafE PMSR PF01625.16 gi|345005980|ref|YP_004808833.1| - 4.9e-64 214.9 0.0 6e-64 214.6 0.0 1.1 1 0 0 1 1 1 1 Peptide methionine sulfoxide reductase DUF1632 PF07857.7 gi|345005981|ref|YP_004808834.1| - 0.25 10.5 1.5 0.37 9.9 1.0 1.4 1 1 0 1 1 1 0 CEO family (DUF1632) Herpes_LMP1 PF05297.6 gi|345005981|ref|YP_004808834.1| - 2.7 6.8 6.3 3.2 6.5 4.4 1.0 1 0 0 1 1 1 0 Herpesvirus latent membrane protein 1 (LMP1) GHMP_kinases_N PF00288.21 gi|345005982|ref|YP_004808835.1| - 7e-15 54.8 3.2 1.7e-14 53.5 2.2 1.7 1 0 0 1 1 1 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.8 gi|345005982|ref|YP_004808835.1| - 2e-08 34.2 0.1 5.6e-08 32.8 0.1 1.8 1 0 0 1 1 1 1 GHMP kinases C terminal DnaJ PF00226.26 gi|345005983|ref|YP_004808836.1| - 1.8e-12 46.8 0.0 2.6e-12 46.2 0.0 1.3 1 0 0 1 1 1 1 DnaJ domain Polysacc_synt_C PF14667.1 gi|345005983|ref|YP_004808836.1| - 0.0057 16.4 3.6 0.0072 16.1 2.5 1.1 1 0 0 1 1 1 1 Polysaccharide biosynthesis C-terminal domain PspC PF04024.7 gi|345005983|ref|YP_004808836.1| - 0.038 13.4 2.9 0.078 12.4 2.0 1.4 1 0 0 1 1 1 0 PspC domain Pam16 PF03656.8 gi|345005983|ref|YP_004808836.1| - 0.048 13.4 2.1 0.068 12.9 1.5 1.3 1 0 0 1 1 1 0 Pam16 DUF2892 PF11127.3 gi|345005983|ref|YP_004808836.1| - 3.1 7.7 7.1 5.1 6.9 4.9 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2892) OMPdecase PF00215.19 gi|345005984|ref|YP_004808837.1| - 8.6e-33 113.6 0.0 1.1e-32 113.2 0.0 1.1 1 0 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family Pox_A_type_inc PF04508.7 gi|345005985|ref|YP_004808838.1| - 0.00043 19.8 2.4 0.00093 18.7 1.7 1.5 1 0 0 1 1 1 1 Viral A-type inclusion protein repeat End3 PF12761.2 gi|345005985|ref|YP_004808838.1| - 0.0092 15.6 0.4 0.01 15.4 0.3 1.1 1 0 0 1 1 1 1 Actin cytoskeleton-regulatory complex protein END3 CHAD PF05235.9 gi|345005985|ref|YP_004808838.1| - 0.02 14.4 0.9 0.024 14.2 0.7 1.0 1 0 0 1 1 1 0 CHAD domain HalX PF08663.5 gi|345005985|ref|YP_004808838.1| - 0.058 13.3 0.6 0.082 12.9 0.4 1.2 1 0 0 1 1 1 0 HalX domain MttA_Hcf106 PF02416.11 gi|345005986|ref|YP_004808839.1| - 0.0008 18.4 2.3 0.0008 18.4 1.6 2.8 3 1 1 4 4 4 1 mttA/Hcf106 family SpoIIIAH PF12685.2 gi|345005986|ref|YP_004808839.1| - 0.016 14.7 0.0 0.018 14.5 0.0 1.0 1 0 0 1 1 1 0 SpoIIIAH-like protein Pox_A_type_inc PF04508.7 gi|345005986|ref|YP_004808839.1| - 0.2 11.5 0.6 0.3 10.9 0.4 1.3 1 0 0 1 1 1 0 Viral A-type inclusion protein repeat Packaging_FI PF14000.1 gi|345005986|ref|YP_004808839.1| - 0.39 10.9 4.1 0.45 10.7 2.8 1.1 1 0 0 1 1 1 0 DNA packaging protein FI Amidohydro_3 PF07969.6 gi|345005987|ref|YP_004808840.1| - 1.8e-75 254.6 7.7 2.1e-75 254.4 5.4 1.0 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_5 PF13594.1 gi|345005987|ref|YP_004808840.1| - 7.6e-10 38.4 0.0 2.4e-09 36.8 0.0 1.9 1 0 0 1 1 1 1 Amidohydrolase Amidohydro_1 PF01979.15 gi|345005987|ref|YP_004808840.1| - 3.3e-08 33.5 0.3 0.0022 17.6 0.0 2.9 2 1 1 3 3 3 2 Amidohydrolase family Amidohydro_4 PF13147.1 gi|345005987|ref|YP_004808840.1| - 1.5e-07 31.7 16.2 0.002 18.1 11.2 3.4 1 1 0 1 1 1 1 Amidohydrolase HMG-CoA_red PF00368.13 gi|345005988|ref|YP_004808841.1| - 2.4e-137 457.5 11.5 2.8e-137 457.3 8.0 1.0 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A reductase Zn-ribbon_8 PF09723.5 gi|345005989|ref|YP_004808842.1| - 0.0015 18.4 0.7 0.003 17.4 0.5 1.5 1 0 0 1 1 1 1 Zinc ribbon domain zf-Di19 PF05605.7 gi|345005989|ref|YP_004808842.1| - 0.028 14.5 0.0 0.043 13.9 0.0 1.3 1 0 0 1 1 1 0 Drought induced 19 protein (Di19), zinc-binding HypA PF01155.14 gi|345005989|ref|YP_004808842.1| - 0.058 13.0 0.2 0.11 12.1 0.2 1.5 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family TF_Zn_Ribbon PF08271.7 gi|345005989|ref|YP_004808842.1| - 0.13 11.5 0.8 0.41 10.0 0.6 1.9 1 0 0 1 1 1 0 TFIIB zinc-binding OrfB_Zn_ribbon PF07282.6 gi|345005989|ref|YP_004808842.1| - 0.21 11.2 3.5 0.8 9.4 2.0 2.3 2 1 0 2 2 2 0 Putative transposase DNA-binding domain RHH_1 PF01402.16 gi|345005989|ref|YP_004808842.1| - 0.35 10.8 4.1 17 5.4 0.0 3.4 3 0 0 3 3 3 0 Ribbon-helix-helix protein, copG family cwf21 PF08312.7 gi|345005989|ref|YP_004808842.1| - 4.3 7.2 9.9 0.59 10.0 0.2 3.2 2 2 0 2 2 2 0 cwf21 domain FYDLN_acid PF09538.5 gi|345005989|ref|YP_004808842.1| - 9.8 6.8 9.9 90 3.7 6.9 2.1 1 1 0 1 1 1 0 Protein of unknown function (FYDLN_acid) Epimerase PF01370.16 gi|345005990|ref|YP_004808843.1| - 1.2e-18 67.4 0.0 1.7e-18 66.9 0.0 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|345005990|ref|YP_004808843.1| - 6.8e-12 44.6 0.0 9.6e-12 44.1 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_4 PF07993.7 gi|345005990|ref|YP_004808843.1| - 6.1e-10 38.4 0.0 8.2e-10 38.0 0.0 1.1 1 0 0 1 1 1 1 Male sterility protein RmlD_sub_bind PF04321.12 gi|345005990|ref|YP_004808843.1| - 7.1e-09 34.9 0.3 8.3e-08 31.4 0.2 2.4 2 1 0 2 2 2 1 RmlD substrate binding domain Polysacc_synt_2 PF02719.10 gi|345005990|ref|YP_004808843.1| - 1.8e-08 33.6 0.0 1.4e-07 30.7 0.1 2.2 2 1 0 2 2 2 1 Polysaccharide biosynthesis protein NAD_binding_10 PF13460.1 gi|345005990|ref|YP_004808843.1| - 1.1e-06 28.7 0.0 2.5e-06 27.6 0.0 1.6 2 0 0 2 2 2 1 NADH(P)-binding adh_short PF00106.20 gi|345005990|ref|YP_004808843.1| - 0.018 14.9 0.4 0.072 12.9 0.3 1.9 1 1 0 1 1 1 0 short chain dehydrogenase KR PF08659.5 gi|345005990|ref|YP_004808843.1| - 0.036 13.7 0.1 0.45 10.1 0.0 2.1 1 1 1 2 2 2 0 KR domain NmrA PF05368.8 gi|345005990|ref|YP_004808843.1| - 0.087 12.0 0.0 0.12 11.5 0.0 1.4 1 0 0 1 1 1 0 NmrA-like family B5 PF03484.10 gi|345005991|ref|YP_004808844.1| - 5.6e-14 51.7 0.0 4.1e-12 45.7 0.0 2.9 3 0 0 3 3 3 1 tRNA synthetase B5 domain B3_4 PF03483.12 gi|345005991|ref|YP_004808844.1| - 5.6e-10 38.9 0.0 2.8e-06 26.9 0.0 2.2 2 0 0 2 2 2 2 B3/4 domain tRNA-synt_2d PF01409.15 gi|345005991|ref|YP_004808844.1| - 0.00013 21.2 0.0 0.00021 20.5 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class II core domain (F) tRNA-synt_2d PF01409.15 gi|345005992|ref|YP_004808845.1| - 3.1e-78 262.4 0.0 4e-78 262.0 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II core domain (F) tRNA-synt_2 PF00152.15 gi|345005992|ref|YP_004808845.1| - 3.7e-05 22.6 1.3 0.015 14.1 0.2 2.9 3 0 0 3 3 3 2 tRNA synthetases class II (D, K and N) MarR PF01047.17 gi|345005992|ref|YP_004808845.1| - 0.056 13.1 0.0 0.7 9.6 0.0 2.3 2 0 0 2 2 2 0 MarR family MarR_2 PF12802.2 gi|345005992|ref|YP_004808845.1| - 0.073 12.7 0.7 1.4 8.6 0.0 2.5 2 0 0 2 2 2 0 MarR family HTH_27 PF13463.1 gi|345005992|ref|YP_004808845.1| - 0.098 12.9 0.1 1.2 9.5 0.0 2.5 3 0 0 3 3 3 0 Winged helix DNA-binding domain Lar_restr_allev PF14354.1 gi|345005993|ref|YP_004808846.1| - 0.011 15.9 3.2 0.029 14.6 2.2 1.7 1 0 0 1 1 1 0 Restriction alleviation protein Lar tRNA-synt_1b PF00579.20 gi|345005994|ref|YP_004808847.1| - 1.6e-39 135.7 0.0 4.8e-23 81.7 0.0 2.1 2 0 0 2 2 2 2 tRNA synthetases class I (W and Y) tRNA_int_endo_N PF02778.9 gi|345005995|ref|YP_004808848.1| - 4.1e-32 109.5 0.0 5e-16 57.9 0.0 2.4 2 0 0 2 2 2 2 tRNA intron endonuclease, N-terminal domain tRNA_int_endo PF01974.12 gi|345005995|ref|YP_004808848.1| - 4.1e-32 109.8 0.0 4.5e-22 77.6 0.0 2.7 2 1 0 2 2 2 2 tRNA intron endonuclease, catalytic C-terminal domain tRNA_int_end_N2 PF12928.2 gi|345005995|ref|YP_004808848.1| - 0.04 13.3 0.0 5.7 6.4 0.0 2.5 2 0 0 2 2 2 0 tRNA-splicing endonuclease subunit sen54 N-term zf-C4_Topoisom PF01396.14 gi|345005996|ref|YP_004808849.1| - 4.2e-09 35.7 12.1 2.9e-07 29.8 0.3 3.4 3 0 0 3 3 3 2 Topoisomerase DNA binding C4 zinc finger DUF91 PF01939.11 gi|345005996|ref|YP_004808849.1| - 6.5e-07 28.7 0.0 8.9e-07 28.2 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF91 Auto_anti-p27 PF06677.7 gi|345005996|ref|YP_004808849.1| - 1.3e-06 28.0 18.1 0.00011 21.8 0.1 4.4 4 1 1 5 5 5 2 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zinc-ribbons_6 PF07191.7 gi|345005996|ref|YP_004808849.1| - 0.00052 19.7 3.6 0.0094 15.7 0.2 2.8 1 1 1 2 2 2 1 zinc-ribbons Zn-ribbon_8 PF09723.5 gi|345005996|ref|YP_004808849.1| - 0.011 15.6 6.1 5.1 7.1 0.0 3.9 3 0 0 3 3 3 0 Zinc ribbon domain zf-IS66 PF13005.2 gi|345005996|ref|YP_004808849.1| - 0.02 14.8 13.1 0.41 10.6 0.9 4.3 3 0 0 3 3 3 0 zinc-finger binding domain of transposase IS66 HypA PF01155.14 gi|345005996|ref|YP_004808849.1| - 0.021 14.4 7.2 0.028 14.0 0.7 3.2 2 2 0 2 2 2 0 Hydrogenase expression/synthesis hypA family zf-ISL3 PF14690.1 gi|345005996|ref|YP_004808849.1| - 0.1 12.6 3.7 9.1 6.4 0.1 3.6 3 0 0 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 TerY-C PF15616.1 gi|345005996|ref|YP_004808849.1| - 0.25 11.2 5.8 0.54 10.1 0.5 2.8 2 1 0 2 2 2 0 TerY-C metal binding domain zf-Mss51 PF13824.1 gi|345005996|ref|YP_004808849.1| - 0.38 10.6 10.5 1.8 8.5 0.2 3.9 4 0 0 4 4 4 0 Zinc-finger of mitochondrial splicing suppressor 51 Zn_ribbon_recom PF13408.1 gi|345005996|ref|YP_004808849.1| - 0.53 10.5 5.5 1.6 9.0 0.2 3.1 2 1 1 3 3 3 0 Recombinase zinc beta ribbon domain DZR PF12773.2 gi|345005996|ref|YP_004808849.1| - 0.56 10.0 11.7 0.16 11.7 0.9 3.3 1 1 2 3 3 3 0 Double zinc ribbon DNA_ligase_ZBD PF03119.11 gi|345005996|ref|YP_004808849.1| - 1.6 8.5 23.2 0.12 12.0 0.9 4.6 4 1 0 4 4 4 0 NAD-dependent DNA ligase C4 zinc finger domain zf-C2H2 PF00096.21 gi|345005996|ref|YP_004808849.1| - 6.3 7.3 9.1 1.3e+02 3.2 0.1 4.8 4 0 0 4 4 4 0 Zinc finger, C2H2 type zinc_ribbon_2 PF13240.1 gi|345005996|ref|YP_004808849.1| - 7.9 6.1 9.7 17 5.0 0.2 3.6 3 0 0 3 3 3 0 zinc-ribbon domain zf-HYPF PF07503.7 gi|345005996|ref|YP_004808849.1| - 8.7 5.8 8.4 29 4.1 0.2 3.6 3 0 0 3 3 3 0 HypF finger HAD_2 PF13419.1 gi|345005997|ref|YP_004808850.1| - 2e-19 70.4 0.0 2.6e-19 70.1 0.0 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|345005997|ref|YP_004808850.1| - 3.3e-11 44.0 0.0 3.4e-09 37.4 0.0 2.1 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|345005997|ref|YP_004808850.1| - 7.8e-11 41.5 0.1 1.9e-10 40.2 0.0 1.7 2 0 0 2 2 2 1 HAD-hyrolase-like HAD PF12710.2 gi|345005997|ref|YP_004808850.1| - 1.9e-05 24.9 0.0 2.1e-05 24.7 0.0 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase CIDE-N PF02017.10 gi|345005997|ref|YP_004808850.1| - 0.072 12.8 0.0 0.36 10.6 0.0 2.1 2 0 0 2 2 2 0 CIDE-N domain DEAD PF00270.24 gi|345005998|ref|YP_004808851.1| - 4.1e-27 94.7 0.0 7.6e-27 93.8 0.0 1.4 1 0 0 1 1 1 1 DEAD/DEAH box helicase Sec63 PF02889.11 gi|345005998|ref|YP_004808851.1| - 7.3e-25 87.8 0.0 1e-24 87.3 0.0 1.2 1 0 0 1 1 1 1 Sec63 Brl domain HHH_5 PF14520.1 gi|345005998|ref|YP_004808851.1| - 7.5e-10 38.8 1.8 2.6e-09 37.1 0.8 2.3 2 0 0 2 2 2 1 Helix-hairpin-helix domain Helicase_C PF00271.26 gi|345005998|ref|YP_004808851.1| - 8.9e-09 35.1 0.0 2.6e-08 33.6 0.0 1.8 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|345005998|ref|YP_004808851.1| - 6.5e-08 32.6 0.0 1.2e-07 31.7 0.0 1.4 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit SNF2_N PF00176.18 gi|345005998|ref|YP_004808851.1| - 0.0042 15.9 0.0 0.0066 15.2 0.0 1.2 1 0 0 1 1 1 1 SNF2 family N-terminal domain DNA_pol_lambd_f PF10391.4 gi|345005998|ref|YP_004808851.1| - 0.0085 15.6 0.0 0.02 14.4 0.0 1.6 1 0 0 1 1 1 1 Fingers domain of DNA polymerase lambda MatE PF01554.13 gi|345005999|ref|YP_004808852.1| - 6e-50 169.0 23.4 1.7e-28 99.2 3.8 2.8 3 0 0 3 3 3 2 MatE MVIN PF03023.9 gi|345005999|ref|YP_004808852.1| - 2e-09 36.4 7.4 2e-08 33.1 3.6 2.2 2 0 0 2 2 2 2 MviN-like protein Polysacc_synt_C PF14667.1 gi|345005999|ref|YP_004808852.1| - 2e-08 34.1 6.2 2e-08 34.1 4.3 5.0 4 3 0 4 4 4 1 Polysaccharide biosynthesis C-terminal domain Radical_SAM PF04055.16 gi|345006000|ref|YP_004808853.1| - 1e-11 45.2 0.0 2e-11 44.3 0.0 1.5 1 0 0 1 1 1 1 Radical SAM superfamily E1_dh PF00676.15 gi|345006001|ref|YP_004808854.1| - 2.7e-88 295.5 0.0 3.2e-88 295.3 0.0 1.0 1 0 0 1 1 1 1 Dehydrogenase E1 component Transketolase_N PF00456.16 gi|345006001|ref|YP_004808854.1| - 3.3e-07 29.4 0.0 5.5e-07 28.6 0.0 1.4 1 1 0 1 1 1 1 Transketolase, thiamine diphosphate binding domain DXP_synthase_N PF13292.1 gi|345006001|ref|YP_004808854.1| - 6.9e-07 28.4 0.0 1.1e-06 27.7 0.0 1.3 1 0 0 1 1 1 1 1-deoxy-D-xylulose-5-phosphate synthase TPP_enzyme_C PF02775.16 gi|345006001|ref|YP_004808854.1| - 0.01 15.4 0.0 0.056 13.0 0.0 2.0 1 1 0 1 1 1 0 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HTH_41 PF14502.1 gi|345006001|ref|YP_004808854.1| - 0.075 12.6 0.0 0.15 11.6 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain Transket_pyr PF02779.19 gi|345006002|ref|YP_004808855.1| - 1.5e-47 161.3 0.0 2e-47 160.9 0.0 1.2 1 0 0 1 1 1 1 Transketolase, pyrimidine binding domain Transketolase_C PF02780.15 gi|345006002|ref|YP_004808855.1| - 1.8e-38 131.2 0.2 4.6e-38 129.9 0.1 1.7 2 0 0 2 2 2 1 Transketolase, C-terminal domain Pentaxin PF00354.12 gi|345006002|ref|YP_004808855.1| - 0.11 11.9 0.0 0.16 11.3 0.0 1.2 1 0 0 1 1 1 0 Pentaxin family 2-oxoacid_dh PF00198.18 gi|345006003|ref|YP_004808856.1| - 5e-88 294.2 0.2 6.8e-88 293.8 0.2 1.2 1 0 0 1 1 1 1 2-oxoacid dehydrogenases acyltransferase (catalytic domain) Biotin_lipoyl PF00364.17 gi|345006003|ref|YP_004808856.1| - 2e-21 75.4 3.0 2.3e-21 75.2 1.2 1.8 2 0 0 2 2 2 1 Biotin-requiring enzyme E3_binding PF02817.12 gi|345006003|ref|YP_004808856.1| - 1.3e-18 66.3 4.5 5.4e-14 51.5 1.0 2.5 2 0 0 2 2 2 2 e3 binding domain Biotin_lipoyl_2 PF13533.1 gi|345006003|ref|YP_004808856.1| - 9.6e-07 28.3 1.9 0.026 14.1 0.2 2.7 1 1 1 2 2 2 2 Biotin-lipoyl like HlyD_2 PF12700.2 gi|345006003|ref|YP_004808856.1| - 0.0022 17.2 0.7 0.15 11.2 0.0 2.5 2 1 1 3 3 3 1 HlyD family secretion protein GCV_H PF01597.14 gi|345006003|ref|YP_004808856.1| - 0.012 15.2 0.3 0.033 13.8 0.2 1.8 1 0 0 1 1 1 0 Glycine cleavage H-protein HlyD_3 PF13437.1 gi|345006003|ref|YP_004808856.1| - 0.063 13.6 0.7 7.7 6.9 0.0 2.7 1 1 1 2 2 2 0 HlyD family secretion protein Pyr_redox_2 PF07992.9 gi|345006004|ref|YP_004808857.1| - 2.4e-42 145.0 13.7 3.8e-41 141.1 9.5 3.6 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.17 gi|345006004|ref|YP_004808857.1| - 9.7e-39 131.8 1.2 9.7e-39 131.8 0.9 1.9 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox PF00070.22 gi|345006004|ref|YP_004808857.1| - 4.1e-20 71.9 8.9 3.9e-19 68.8 0.8 3.2 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.17 gi|345006004|ref|YP_004808857.1| - 3.3e-11 42.6 3.9 8.2e-09 34.7 0.2 3.0 3 0 0 3 3 3 2 Glucose inhibited division protein A Pyr_redox_3 PF13738.1 gi|345006004|ref|YP_004808857.1| - 1.9e-10 41.1 1.6 3.7e-07 30.3 0.6 2.6 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.19 gi|345006004|ref|YP_004808857.1| - 2e-09 36.8 12.4 2.3e-07 30.0 0.6 4.2 3 1 1 4 4 4 2 FAD binding domain DAO PF01266.19 gi|345006004|ref|YP_004808857.1| - 2.6e-09 36.4 13.4 0.00069 18.6 0.2 4.4 5 0 0 5 5 5 3 FAD dependent oxidoreductase FAD_binding_3 PF01494.14 gi|345006004|ref|YP_004808857.1| - 4.8e-08 32.4 9.5 0.0013 17.8 0.2 3.3 3 0 0 3 3 3 3 FAD binding domain FAD_oxidored PF12831.2 gi|345006004|ref|YP_004808857.1| - 2.5e-07 30.1 0.7 2.5e-07 30.1 0.5 1.8 2 0 0 2 2 2 1 FAD dependent oxidoreductase HI0933_like PF03486.9 gi|345006004|ref|YP_004808857.1| - 3.7e-07 28.9 5.2 0.00025 19.6 0.1 3.3 3 0 0 3 3 3 2 HI0933-like protein UDPG_MGDP_dh_N PF03721.9 gi|345006004|ref|YP_004808857.1| - 2.6e-06 26.9 2.5 5.2e-05 22.6 0.2 2.5 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 3HCDH_N PF02737.13 gi|345006004|ref|YP_004808857.1| - 3.7e-06 26.7 3.9 0.0016 18.1 0.1 2.9 3 0 0 3 3 3 2 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_8 PF13450.1 gi|345006004|ref|YP_004808857.1| - 3.7e-06 26.8 3.6 0.00077 19.4 0.2 2.5 2 0 0 2 2 2 2 NAD(P)-binding Rossmann-like domain Thi4 PF01946.12 gi|345006004|ref|YP_004808857.1| - 9.9e-05 21.5 5.2 0.014 14.5 0.2 3.1 3 0 0 3 3 3 2 Thi4 family XdhC_C PF13478.1 gi|345006004|ref|YP_004808857.1| - 0.00045 20.5 0.6 0.051 13.8 0.0 3.3 3 1 0 3 3 3 1 XdhC Rossmann domain NAD_binding_7 PF13241.1 gi|345006004|ref|YP_004808857.1| - 0.00047 20.3 0.7 1.3 9.3 0.1 2.6 2 0 0 2 2 2 2 Putative NAD(P)-binding K_oxygenase PF13434.1 gi|345006004|ref|YP_004808857.1| - 0.029 13.2 0.1 2 7.2 0.0 2.3 2 0 0 2 2 2 0 L-lysine 6-monooxygenase (NADPH-requiring) CPSase_L_chain PF00289.17 gi|345006004|ref|YP_004808857.1| - 0.048 13.7 0.3 85 3.3 0.0 4.2 2 1 1 3 3 3 0 Carbamoyl-phosphate synthase L chain, N-terminal domain NAD_binding_9 PF13454.1 gi|345006004|ref|YP_004808857.1| - 0.059 13.1 1.5 7.6 6.2 0.1 3.2 3 0 0 3 3 3 0 FAD-NAD(P)-binding AlaDh_PNT_C PF01262.16 gi|345006004|ref|YP_004808857.1| - 0.11 12.0 3.0 0.29 10.6 0.1 2.7 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain Lycopene_cycl PF05834.7 gi|345006004|ref|YP_004808857.1| - 0.11 11.3 2.9 3.3 6.5 0.3 2.5 2 1 0 2 2 2 0 Lycopene cyclase protein ThiF PF00899.16 gi|345006004|ref|YP_004808857.1| - 1.5 8.6 5.0 8.4 6.2 0.3 2.6 2 1 0 2 2 2 0 ThiF family Peptidase_M20 PF01546.23 gi|345006005|ref|YP_004808858.1| - 7.2e-26 90.8 1.2 1.3e-25 90.0 0.8 1.4 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.9 gi|345006005|ref|YP_004808858.1| - 3.4e-09 36.4 0.1 8.3e-09 35.1 0.1 1.6 1 0 0 1 1 1 1 Peptidase dimerisation domain Peptidase_M28 PF04389.12 gi|345006005|ref|YP_004808858.1| - 2e-08 34.1 0.0 4.1e-08 33.1 0.0 1.5 2 0 0 2 2 2 1 Peptidase family M28 SIMPL PF04402.9 gi|345006005|ref|YP_004808858.1| - 0.18 11.6 1.0 0.39 10.5 0.2 2.0 3 0 0 3 3 3 0 Protein of unknown function (DUF541) PGM_PMM_I PF02878.11 gi|345006006|ref|YP_004808859.1| - 4.2e-31 107.2 0.0 6.9e-31 106.5 0.0 1.4 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.11 gi|345006006|ref|YP_004808859.1| - 7.8e-29 100.0 2.0 9.6e-29 99.7 0.3 2.0 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_IV PF00408.15 gi|345006006|ref|YP_004808859.1| - 1.2e-15 57.2 0.5 5e-15 55.2 0.3 2.1 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain PGM_PMM_III PF02880.11 gi|345006006|ref|YP_004808859.1| - 1.5e-13 50.7 0.1 2.3e-12 46.9 0.0 2.2 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III DUF1664 PF07889.7 gi|345006007|ref|YP_004808860.1| - 0.35 10.6 1.5 0.42 10.4 0.2 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF1664) PRA-CH PF01502.13 gi|345006008|ref|YP_004808861.1| - 5.5e-37 125.2 0.2 1e-36 124.3 0.1 1.4 1 0 0 1 1 1 1 Phosphoribosyl-AMP cyclohydrolase Prim-Pol PF09250.6 gi|345006008|ref|YP_004808861.1| - 0.072 13.0 0.0 0.08 12.9 0.0 1.2 1 0 0 1 1 1 0 Bifunctional DNA primase/polymerase, N-terminal Arc_PepC_II PF06847.6 gi|345006009|ref|YP_004808862.1| - 2.5e-15 56.6 0.0 7.1e-15 55.2 0.0 1.7 2 0 0 2 2 2 1 Archaeal Peptidase A24 C-terminus Type II Peptidase_A24 PF01478.13 gi|345006009|ref|YP_004808862.1| - 7.7e-09 35.6 8.5 1.4e-08 34.8 4.9 2.1 1 1 1 2 2 2 1 Type IV leader peptidase family Aldedh PF00171.17 gi|345006010|ref|YP_004808863.1| - 5.8e-138 460.0 0.0 6.5e-138 459.9 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family TPP_enzyme_N PF02776.13 gi|345006011|ref|YP_004808864.1| - 1.1e-54 184.5 0.0 2.8e-54 183.1 0.0 1.7 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.16 gi|345006011|ref|YP_004808864.1| - 3.1e-33 114.5 0.3 2e-32 111.8 0.0 2.2 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_M PF00205.17 gi|345006011|ref|YP_004808864.1| - 4.7e-30 104.1 0.1 8.5e-30 103.3 0.1 1.4 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, central domain Fzo_mitofusin PF04799.8 gi|345006012|ref|YP_004808865.1| - 0.059 12.7 0.1 0.078 12.3 0.1 1.2 1 0 0 1 1 1 0 fzo-like conserved region FolB PF02152.13 gi|345006012|ref|YP_004808865.1| - 0.11 12.6 0.0 0.19 11.9 0.0 1.4 2 0 0 2 2 2 0 Dihydroneopterin aldolase DUF3456 PF11938.3 gi|345006014|ref|YP_004808867.1| - 0.12 12.4 0.1 0.2 11.6 0.0 1.5 2 0 0 2 2 2 0 TLR4 regulator and MIR-interacting MSAP Fer2 PF00111.22 gi|345006015|ref|YP_004808868.1| - 1e-13 50.8 0.3 1.6e-13 50.1 0.2 1.3 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain UPF0029 PF01205.14 gi|345006016|ref|YP_004808869.1| - 3.2e-32 110.4 0.0 4.2e-32 110.0 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized protein family UPF0029 DUF1949 PF09186.6 gi|345006016|ref|YP_004808869.1| - 2.8e-08 33.2 0.4 1e-07 31.4 0.0 2.0 2 0 0 2 2 2 1 Domain of unknown function (DUF1949) EFG_C PF00679.19 gi|345006016|ref|YP_004808869.1| - 0.024 14.4 0.0 0.043 13.6 0.0 1.4 1 0 0 1 1 1 0 Elongation factor G C-terminus ACT PF01842.20 gi|345006017|ref|YP_004808870.1| - 1.1e-05 24.8 1.9 4.2e-05 22.9 0.1 2.6 3 0 0 3 3 3 1 ACT domain ACT_4 PF13291.1 gi|345006017|ref|YP_004808870.1| - 0.013 15.7 0.0 0.096 13.0 0.0 2.2 2 0 0 2 2 2 0 ACT domain HTH_Crp_2 PF13545.1 gi|345006017|ref|YP_004808870.1| - 0.025 14.3 0.1 0.067 12.9 0.0 1.7 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain ACT_7 PF13840.1 gi|345006017|ref|YP_004808870.1| - 0.094 12.2 0.0 0.2 11.2 0.0 1.5 1 0 0 1 1 1 0 ACT domain Mucin PF01456.12 gi|345006018|ref|YP_004808871.1| - 0.038 13.7 3.4 0.045 13.5 2.4 1.1 1 0 0 1 1 1 0 Mucin-like glycoprotein DUF2360 PF10152.4 gi|345006018|ref|YP_004808871.1| - 0.25 11.6 2.4 0.34 11.2 1.7 1.2 1 0 0 1 1 1 0 Predicted coiled-coil domain-containing protein (DUF2360) Ndc1_Nup PF09531.5 gi|345006018|ref|YP_004808871.1| - 0.27 9.5 0.5 0.31 9.4 0.4 1.0 1 0 0 1 1 1 0 Nucleoporin protein Ndc1-Nup IGPD PF00475.13 gi|345006019|ref|YP_004808872.1| - 1.2e-63 213.2 2.5 1.5e-63 212.9 1.7 1.1 1 0 0 1 1 1 1 Imidazoleglycerol-phosphate dehydratase Cupin_2 PF07883.6 gi|345006020|ref|YP_004808873.1| - 3.3e-15 55.3 3.4 4.9e-15 54.7 2.4 1.3 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.14 gi|345006020|ref|YP_004808873.1| - 0.00024 20.8 0.7 0.0003 20.5 0.5 1.1 1 0 0 1 1 1 1 AraC-like ligand binding domain Ectoine_synth PF06339.7 gi|345006020|ref|YP_004808873.1| - 0.00027 20.8 0.0 0.00032 20.6 0.0 1.1 1 0 0 1 1 1 1 Ectoine synthase DUF1255 PF06865.6 gi|345006020|ref|YP_004808873.1| - 0.0078 16.4 0.0 0.013 15.7 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF1255) MannoseP_isomer PF01050.13 gi|345006020|ref|YP_004808873.1| - 0.02 14.4 0.0 0.027 14.0 0.0 1.1 1 0 0 1 1 1 0 Mannose-6-phosphate isomerase Chitin_bind_4 PF00379.18 gi|345006020|ref|YP_004808873.1| - 0.03 14.6 1.1 0.04 14.1 0.0 1.9 2 0 0 2 2 2 0 Insect cuticle protein Cupin_3 PF05899.7 gi|345006020|ref|YP_004808873.1| - 0.048 13.0 0.2 0.066 12.6 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF861) HTH_20 PF12840.2 gi|345006022|ref|YP_004808875.1| - 0.0014 18.3 0.8 0.0024 17.6 0.6 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_27 PF13463.1 gi|345006022|ref|YP_004808875.1| - 0.016 15.5 0.0 0.032 14.5 0.0 1.6 1 0 0 1 1 1 0 Winged helix DNA-binding domain MarR_2 PF12802.2 gi|345006022|ref|YP_004808875.1| - 0.1 12.2 0.5 0.7 9.6 0.3 2.1 1 1 0 1 1 1 0 MarR family Iso_dh PF00180.15 gi|345006023|ref|YP_004808876.1| - 5.6e-104 347.8 0.0 6.9e-104 347.5 0.0 1.1 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase Asparaginase_2 PF01112.13 gi|345006024|ref|YP_004808877.1| - 4.3e-54 183.3 11.3 6.2e-54 182.8 7.8 1.3 1 1 0 1 1 1 1 Asparaginase Phage_holin_2 PF04550.7 gi|345006027|ref|YP_004808880.1| - 1.1 9.4 4.4 3 7.9 0.5 2.0 2 0 0 2 2 2 0 Phage holin family 2 tRNA-synt_1b PF00579.20 gi|345006028|ref|YP_004808881.1| - 1.6e-44 152.2 0.0 2.4e-44 151.6 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class I (W and Y) tRNA-synt_1f PF01921.13 gi|345006028|ref|YP_004808881.1| - 0.0064 15.2 0.1 1.1 7.8 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (K) DUF2156 PF09924.4 gi|345006028|ref|YP_004808881.1| - 0.047 12.5 0.1 0.065 12.0 0.1 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2156) Glyco_transf_22 PF03901.12 gi|345006029|ref|YP_004808882.1| - 0.12 11.3 0.4 0.12 11.3 0.3 1.0 1 0 0 1 1 1 0 Alg9-like mannosyltransferase family DUF4131 PF13567.1 gi|345006029|ref|YP_004808882.1| - 0.94 8.8 5.5 1.1 8.6 3.8 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) DUF4418 PF14387.1 gi|345006029|ref|YP_004808882.1| - 2.1 8.1 5.7 2.2 8.0 4.0 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4418) DUF2892 PF11127.3 gi|345006029|ref|YP_004808882.1| - 3.1 7.7 12.0 4.8 7.0 8.3 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF2892) eIF-1a PF01176.14 gi|345006030|ref|YP_004808883.1| - 4.3e-26 90.1 0.1 5.3e-26 89.8 0.1 1.1 1 0 0 1 1 1 1 Translation initiation factor 1A / IF-1 RIO1 PF01163.17 gi|345006032|ref|YP_004808885.1| - 1.5e-62 210.3 0.0 2.6e-62 209.5 0.0 1.3 1 0 0 1 1 1 1 RIO1 family APH PF01636.18 gi|345006032|ref|YP_004808885.1| - 1.3e-09 38.1 2.0 1.6e-06 28.0 0.0 2.7 2 1 1 3 3 3 2 Phosphotransferase enzyme family Kdo PF06293.9 gi|345006032|ref|YP_004808885.1| - 1.8e-06 27.1 0.1 8.1e-06 25.0 0.1 1.9 1 1 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family Pkinase PF00069.20 gi|345006032|ref|YP_004808885.1| - 0.00019 20.6 0.0 0.00055 19.1 0.0 1.6 1 1 0 1 1 1 1 Protein kinase domain WaaY PF06176.6 gi|345006032|ref|YP_004808885.1| - 0.0011 18.1 0.0 0.0019 17.4 0.0 1.3 1 0 0 1 1 1 1 Lipopolysaccharide core biosynthesis protein (WaaY) Peripla_BP_3 PF13377.1 gi|345006032|ref|YP_004808885.1| - 0.019 14.9 0.2 0.041 13.8 0.1 1.8 1 1 0 1 1 1 0 Periplasmic binding protein-like domain Sec16 PF12932.2 gi|345006032|ref|YP_004808885.1| - 0.15 11.9 0.0 0.29 11.0 0.0 1.4 1 1 0 1 1 1 0 Vesicle coat trafficking protein Sec16 mid-region KH_1 PF00013.24 gi|345006033|ref|YP_004808886.1| - 8e-17 60.6 5.8 8.3e-10 38.1 0.4 2.2 2 0 0 2 2 2 2 KH domain KH_3 PF13014.1 gi|345006033|ref|YP_004808886.1| - 1.2e-09 37.5 1.3 1.5e-06 27.7 0.1 2.5 2 0 0 2 2 2 2 KH domain KH_2 PF07650.12 gi|345006033|ref|YP_004808886.1| - 3.1e-05 23.4 1.2 0.011 15.3 0.0 2.7 2 1 0 2 2 2 2 KH domain KH_4 PF13083.1 gi|345006033|ref|YP_004808886.1| - 0.015 14.9 1.2 4.3 7.0 0.1 2.9 2 1 1 3 3 3 0 KH domain ATP-synt_D PF01813.12 gi|345006034|ref|YP_004808887.1| - 1.4e-62 210.7 10.0 1.8e-62 210.4 6.9 1.1 1 0 0 1 1 1 1 ATP synthase subunit D RP-C_C PF11800.3 gi|345006034|ref|YP_004808887.1| - 5.9 6.5 10.4 2.1 8.0 5.1 1.7 2 0 0 2 2 2 0 Replication protein C C-terminal region DZR PF12773.2 gi|345006035|ref|YP_004808888.1| - 0.11 12.3 0.3 0.2 11.4 0.2 1.5 1 0 0 1 1 1 0 Double zinc ribbon HEAT_PBS PF03130.11 gi|345006035|ref|YP_004808888.1| - 0.19 12.2 1.0 1.3 9.6 0.2 2.3 2 0 0 2 2 2 0 PBS lyase HEAT-like repeat eRF1_2 PF03464.10 gi|345006036|ref|YP_004808889.1| - 4.2e-38 130.6 0.0 1.3e-37 129.1 0.0 1.8 2 0 0 2 2 2 1 eRF1 domain 2 eRF1_3 PF03465.10 gi|345006036|ref|YP_004808889.1| - 4.7e-25 88.0 0.4 1.6e-24 86.3 0.0 2.1 3 0 0 3 3 3 1 eRF1 domain 3 eRF1_1 PF03463.10 gi|345006036|ref|YP_004808889.1| - 6.9e-23 80.6 0.0 1.1e-22 80.0 0.0 1.3 1 0 0 1 1 1 1 eRF1 domain 1 tRNA-synt_1d PF00750.14 gi|345006037|ref|YP_004808890.1| - 5.2e-59 199.8 0.0 7e-59 199.4 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class I (R) DALR_1 PF05746.10 gi|345006037|ref|YP_004808890.1| - 2.1e-31 108.3 0.0 1.9e-30 105.2 0.0 2.2 2 0 0 2 2 2 1 DALR anticodon binding domain Arg_tRNA_synt_N PF03485.11 gi|345006037|ref|YP_004808890.1| - 7.1e-08 32.8 0.0 2e-07 31.4 0.0 1.8 1 0 0 1 1 1 1 Arginyl tRNA synthetase N terminal domain tRNA-synt_1f PF01921.13 gi|345006037|ref|YP_004808890.1| - 0.0011 17.6 0.0 0.029 13.0 0.0 2.2 2 0 0 2 2 2 1 tRNA synthetases class I (K) CTP-dep_RFKase PF01982.11 gi|345006038|ref|YP_004808891.1| - 8.1e-42 141.6 0.0 1.2e-41 141.1 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF120 HTH_20 PF12840.2 gi|345006038|ref|YP_004808891.1| - 2.7e-07 30.2 0.3 4.8e-07 29.4 0.2 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|345006038|ref|YP_004808891.1| - 3.4e-06 26.3 0.0 5.1e-06 25.7 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|345006038|ref|YP_004808891.1| - 1.6e-05 24.4 0.3 3e-05 23.6 0.2 1.5 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.1 gi|345006038|ref|YP_004808891.1| - 0.00013 22.1 0.1 0.00027 21.1 0.1 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR PF01047.17 gi|345006038|ref|YP_004808891.1| - 0.00024 20.7 0.0 0.00054 19.6 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_AsnC-type PF13404.1 gi|345006038|ref|YP_004808891.1| - 0.00026 20.4 0.6 0.00051 19.5 0.4 1.5 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_11 PF08279.7 gi|345006038|ref|YP_004808891.1| - 0.0015 18.1 0.1 0.0026 17.3 0.0 1.4 1 0 0 1 1 1 1 HTH domain HTH_34 PF13601.1 gi|345006038|ref|YP_004808891.1| - 0.0019 18.1 0.0 0.0039 17.1 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_DeoR PF08220.7 gi|345006038|ref|YP_004808891.1| - 0.0059 16.1 0.0 0.011 15.2 0.0 1.4 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain Fe_dep_repress PF01325.14 gi|345006038|ref|YP_004808891.1| - 0.03 14.2 0.0 0.059 13.3 0.0 1.4 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain GARS_A PF01071.14 gi|345006038|ref|YP_004808891.1| - 0.061 12.8 0.3 0.11 12.0 0.2 1.4 1 1 0 1 1 1 0 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain HTH_1 PF00126.22 gi|345006038|ref|YP_004808891.1| - 0.066 12.9 0.1 0.22 11.2 0.1 1.9 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family HxlR PF01638.12 gi|345006038|ref|YP_004808891.1| - 0.066 12.8 0.0 0.16 11.5 0.0 1.6 1 0 0 1 1 1 0 HxlR-like helix-turn-helix HTH_Crp_2 PF13545.1 gi|345006038|ref|YP_004808891.1| - 0.068 12.9 0.0 0.13 12.0 0.0 1.5 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain TrmB PF01978.14 gi|345006038|ref|YP_004808891.1| - 0.087 12.5 0.0 0.18 11.5 0.0 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB LexA_DNA_bind PF01726.11 gi|345006038|ref|YP_004808891.1| - 0.13 11.8 0.0 0.26 10.8 0.0 1.4 1 0 0 1 1 1 0 LexA DNA binding domain DHBP_synthase PF00926.14 gi|345006039|ref|YP_004808892.1| - 2.4e-53 180.2 0.0 2.8e-53 180.0 0.0 1.0 1 0 0 1 1 1 1 3,4-dihydroxy-2-butanone 4-phosphate synthase IspD PF01128.14 gi|345006039|ref|YP_004808892.1| - 0.11 12.0 0.4 0.17 11.3 0.3 1.3 1 0 0 1 1 1 0 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Aminotran_4 PF01063.14 gi|345006040|ref|YP_004808893.1| - 1.1e-45 155.8 0.0 1.4e-45 155.6 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class IV FAM220 PF15487.1 gi|345006040|ref|YP_004808893.1| - 0.072 12.4 0.0 0.14 11.5 0.0 1.4 1 0 0 1 1 1 0 FAM220 family Peripla_BP_6 PF13458.1 gi|345006041|ref|YP_004808894.1| - 7e-54 183.4 6.0 8e-54 183.2 4.1 1.0 1 0 0 1 1 1 1 Periplasmic binding protein ANF_receptor PF01094.23 gi|345006041|ref|YP_004808894.1| - 2.8e-19 69.1 0.7 9.3e-19 67.4 0.5 1.7 1 1 0 1 1 1 1 Receptor family ligand binding region Peripla_BP_5 PF13433.1 gi|345006041|ref|YP_004808894.1| - 1.3e-17 63.6 0.1 2e-17 63.0 0.1 1.2 1 0 0 1 1 1 1 Periplasmic binding protein domain TAT_signal PF10518.4 gi|345006041|ref|YP_004808894.1| - 0.041 13.8 2.2 0.15 12.1 1.5 2.0 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence BPD_transp_2 PF02653.11 gi|345006042|ref|YP_004808895.1| - 3e-40 137.9 38.5 3.7e-40 137.5 26.7 1.0 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component BPD_transp_2 PF02653.11 gi|345006043|ref|YP_004808896.1| - 2.7e-29 101.9 36.8 3.4e-29 101.6 25.5 1.1 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component YbgT_YccB PF08173.6 gi|345006043|ref|YP_004808896.1| - 0.91 9.3 13.2 0.18 11.6 3.5 3.7 3 0 0 3 3 3 0 Membrane bound YbgT-like protein ABC_tran PF00005.22 gi|345006044|ref|YP_004808897.1| - 6e-31 107.5 0.0 8.5e-31 107.0 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|345006044|ref|YP_004808897.1| - 1e-13 51.8 0.0 7e-07 29.4 0.0 2.1 2 0 0 2 2 2 2 AAA domain BCA_ABC_TP_C PF12399.3 gi|345006044|ref|YP_004808897.1| - 1.2e-09 37.6 0.4 5.4e-09 35.5 0.3 2.1 2 0 0 2 2 2 1 Branched-chain amino acid ATP-binding cassette transporter SMC_N PF02463.14 gi|345006044|ref|YP_004808897.1| - 4.5e-06 26.0 0.0 1.1e-05 24.7 0.0 1.6 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|345006044|ref|YP_004808897.1| - 1e-05 24.9 0.0 2.1e-05 23.9 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|345006044|ref|YP_004808897.1| - 1.3e-05 25.5 0.1 2.2e-05 24.8 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|345006044|ref|YP_004808897.1| - 0.0007 19.6 0.0 0.00098 19.1 0.0 1.3 1 1 0 1 1 1 1 AAA ATPase domain AAA_15 PF13175.1 gi|345006044|ref|YP_004808897.1| - 0.0045 16.0 0.1 1.9 7.4 0.0 2.0 2 0 0 2 2 2 2 AAA ATPase domain DUF258 PF03193.11 gi|345006044|ref|YP_004808897.1| - 0.011 14.8 0.0 0.016 14.3 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_PrkA PF08298.6 gi|345006044|ref|YP_004808897.1| - 0.056 12.1 0.0 0.14 10.8 0.0 1.6 2 0 0 2 2 2 0 PrkA AAA domain MMR_HSR1 PF01926.18 gi|345006044|ref|YP_004808897.1| - 0.067 13.1 0.0 0.092 12.7 0.0 1.7 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_25 PF13481.1 gi|345006044|ref|YP_004808897.1| - 0.11 11.8 0.0 0.3 10.4 0.0 1.8 2 0 0 2 2 2 0 AAA domain ArgK PF03308.11 gi|345006044|ref|YP_004808897.1| - 0.12 11.1 0.1 0.21 10.3 0.0 1.3 1 0 0 1 1 1 0 ArgK protein ABC_tran PF00005.22 gi|345006045|ref|YP_004808898.1| - 4.5e-33 114.4 0.0 6.1e-33 114.0 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|345006045|ref|YP_004808898.1| - 1.3e-15 58.1 0.4 5.5e-07 29.8 0.0 2.1 1 1 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|345006045|ref|YP_004808898.1| - 1.3e-05 24.5 0.2 0.0022 17.2 0.1 2.1 1 1 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|345006045|ref|YP_004808898.1| - 3.5e-05 23.2 0.0 6.8e-05 22.3 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|345006045|ref|YP_004808898.1| - 0.00046 20.5 0.0 0.001 19.4 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|345006045|ref|YP_004808898.1| - 0.001 19.1 0.5 0.0029 17.6 0.3 1.9 1 1 0 1 1 1 1 AAA ATPase domain AAA_15 PF13175.1 gi|345006045|ref|YP_004808898.1| - 0.0015 17.7 0.1 0.055 12.5 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain AAA PF00004.24 gi|345006045|ref|YP_004808898.1| - 0.0027 17.8 0.0 0.038 14.1 0.0 2.4 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_25 PF13481.1 gi|345006045|ref|YP_004808898.1| - 0.0038 16.6 0.1 0.01 15.2 0.0 1.9 1 1 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|345006045|ref|YP_004808898.1| - 0.0039 16.3 0.0 0.0071 15.5 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_22 PF13401.1 gi|345006045|ref|YP_004808898.1| - 0.0045 17.1 0.1 0.021 14.9 0.0 1.9 2 0 0 2 2 2 1 AAA domain MutS_V PF00488.16 gi|345006045|ref|YP_004808898.1| - 0.0099 15.3 0.0 0.016 14.5 0.0 1.3 1 0 0 1 1 1 1 MutS domain V AAA_10 PF12846.2 gi|345006045|ref|YP_004808898.1| - 0.017 14.5 0.1 0.034 13.6 0.0 1.4 1 0 0 1 1 1 0 AAA-like domain AAA_17 PF13207.1 gi|345006045|ref|YP_004808898.1| - 0.033 15.0 0.2 0.051 14.4 0.1 1.7 1 1 0 1 1 1 0 AAA domain AAA_33 PF13671.1 gi|345006045|ref|YP_004808898.1| - 0.045 13.6 0.0 0.095 12.5 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.1 gi|345006045|ref|YP_004808898.1| - 0.065 12.7 0.0 0.1 12.1 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_5 PF07728.9 gi|345006045|ref|YP_004808898.1| - 0.083 12.6 0.0 0.22 11.2 0.0 1.9 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) NB-ARC PF00931.17 gi|345006045|ref|YP_004808898.1| - 0.084 11.7 0.0 0.11 11.3 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain NACHT PF05729.7 gi|345006045|ref|YP_004808898.1| - 0.086 12.4 0.0 0.15 11.7 0.0 1.3 1 0 0 1 1 1 0 NACHT domain MobB PF03205.9 gi|345006045|ref|YP_004808898.1| - 0.12 12.0 0.0 0.22 11.2 0.0 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B Arch_ATPase PF01637.13 gi|345006045|ref|YP_004808898.1| - 0.13 11.9 0.0 0.28 10.8 0.0 1.5 2 0 0 2 2 1 0 Archaeal ATPase ATP_bind_1 PF03029.12 gi|345006045|ref|YP_004808898.1| - 0.14 11.6 0.1 0.2 11.1 0.1 1.2 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein AAA_14 PF13173.1 gi|345006045|ref|YP_004808898.1| - 0.14 12.0 0.0 0.33 10.8 0.0 1.6 1 0 0 1 1 1 0 AAA domain Tower PF09121.5 gi|345006045|ref|YP_004808898.1| - 0.15 12.0 0.1 0.27 11.1 0.1 1.4 1 0 0 1 1 1 0 Tower Ribosomal_L15e PF00827.12 gi|345006046|ref|YP_004808899.1| - 3.9e-82 274.4 7.6 4.3e-82 274.2 5.3 1.0 1 0 0 1 1 1 1 Ribosomal L15 Orbi_VP6 PF01516.11 gi|345006046|ref|YP_004808899.1| - 0.14 11.2 3.2 0.2 10.7 2.2 1.2 1 0 0 1 1 1 0 Orbivirus helicase VP6 ADH_zinc_N PF00107.21 gi|345006047|ref|YP_004808900.1| - 1.4e-18 66.7 0.2 2.3e-18 66.0 0.2 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.1 gi|345006047|ref|YP_004808900.1| - 1.2e-07 32.6 1.4 1.5e-07 32.3 0.0 1.9 2 1 0 2 2 2 1 Zinc-binding dehydrogenase ThiF PF00899.16 gi|345006048|ref|YP_004808901.1| - 1.1e-42 145.0 0.0 1.8e-42 144.4 0.0 1.3 1 0 0 1 1 1 1 ThiF family MoeZ_MoeB PF05237.8 gi|345006048|ref|YP_004808901.1| - 1.5e-32 110.9 0.1 2.4e-32 110.3 0.0 1.3 1 0 0 1 1 1 1 MoeZ/MoeB domain Saccharop_dh PF03435.13 gi|345006048|ref|YP_004808901.1| - 0.0015 17.5 0.1 0.0021 17.0 0.1 1.2 1 0 0 1 1 1 1 Saccharopine dehydrogenase Shikimate_DH PF01488.15 gi|345006048|ref|YP_004808901.1| - 0.0094 16.0 0.5 0.032 14.3 0.2 1.8 1 1 1 2 2 2 1 Shikimate / quinate 5-dehydrogenase TFIIB PF00382.14 gi|345006049|ref|YP_004808902.1| - 9.9e-39 131.0 0.2 4e-19 68.1 0.0 2.3 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.7 gi|345006049|ref|YP_004808902.1| - 3.4e-15 55.0 1.0 1.1e-14 53.5 0.7 1.7 2 0 0 2 2 2 1 TFIIB zinc-binding Cyclin_C PF02984.14 gi|345006049|ref|YP_004808902.1| - 0.00051 19.9 0.0 0.0078 16.1 0.0 2.2 2 0 0 2 2 2 1 Cyclin, C-terminal domain Cyclin_N PF00134.18 gi|345006049|ref|YP_004808902.1| - 0.0029 17.1 0.0 0.058 12.9 0.0 2.1 1 1 1 2 2 2 1 Cyclin, N-terminal domain DZR PF12773.2 gi|345006049|ref|YP_004808902.1| - 0.0096 15.7 0.7 0.018 14.8 0.5 1.4 1 0 0 1 1 1 1 Double zinc ribbon OrfB_Zn_ribbon PF07282.6 gi|345006049|ref|YP_004808902.1| - 0.011 15.4 0.4 0.02 14.5 0.3 1.4 1 0 0 1 1 1 0 Putative transposase DNA-binding domain RNA_POL_M_15KD PF02150.11 gi|345006049|ref|YP_004808902.1| - 0.027 14.1 0.5 0.051 13.2 0.4 1.5 1 0 0 1 1 1 0 RNA polymerases M/15 Kd subunit Sigma70_r4 PF04545.11 gi|345006049|ref|YP_004808902.1| - 0.045 13.0 0.0 0.73 9.1 0.0 2.7 2 0 0 2 2 2 0 Sigma-70, region 4 A2L_zn_ribbon PF08792.5 gi|345006049|ref|YP_004808902.1| - 0.072 12.5 1.6 2.8 7.4 0.1 2.4 2 0 0 2 2 2 0 A2L zinc ribbon domain zf-NADH-PPase PF09297.6 gi|345006049|ref|YP_004808902.1| - 0.12 11.8 0.6 0.26 10.8 0.4 1.5 1 0 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain Prok-RING_1 PF14446.1 gi|345006049|ref|YP_004808902.1| - 0.26 11.0 1.5 0.54 10.0 1.1 1.6 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 zf-Mss51 PF13824.1 gi|345006049|ref|YP_004808902.1| - 0.4 10.5 2.4 0.86 9.5 0.3 2.6 3 0 0 3 3 3 0 Zinc-finger of mitochondrial splicing suppressor 51 Zn-ribbon_8 PF09723.5 gi|345006049|ref|YP_004808902.1| - 0.54 10.2 4.3 1.6 8.7 0.3 2.4 1 1 1 2 2 2 0 Zinc ribbon domain GATA PF00320.22 gi|345006049|ref|YP_004808902.1| - 0.76 9.1 2.5 2.5 7.5 0.1 2.6 1 1 1 2 2 2 0 GATA zinc finger zf-IS66 PF13005.2 gi|345006049|ref|YP_004808902.1| - 0.89 9.5 5.1 0.57 10.1 0.3 2.6 1 1 1 2 2 2 0 zinc-finger binding domain of transposase IS66 zf-RING_3 PF14369.1 gi|345006049|ref|YP_004808902.1| - 2.3 8.2 4.5 1.9 8.5 0.3 2.3 1 1 1 2 2 2 0 zinc-finger DNA_ligase_ZBD PF03119.11 gi|345006049|ref|YP_004808902.1| - 6 6.6 6.5 0.57 9.9 0.8 2.1 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain ATP_bind_3 PF01171.15 gi|345006050|ref|YP_004808903.1| - 1.7e-11 43.9 0.0 3.2e-11 43.0 0.0 1.4 1 1 0 1 1 1 1 PP-loop family tRNA_Me_trans PF03054.11 gi|345006050|ref|YP_004808903.1| - 0.00011 20.8 0.0 0.00015 20.4 0.0 1.2 1 0 0 1 1 1 1 tRNA methyl transferase PAPS_reduct PF01507.14 gi|345006050|ref|YP_004808903.1| - 0.00014 21.7 0.0 0.0002 21.2 0.0 1.2 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family NAD_synthase PF02540.12 gi|345006050|ref|YP_004808903.1| - 0.00098 18.0 0.0 0.0016 17.4 0.0 1.3 1 0 0 1 1 1 1 NAD synthase DUF2392 PF10288.4 gi|345006050|ref|YP_004808903.1| - 0.0038 17.5 0.0 0.0064 16.8 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF2392) RecR PF02132.10 gi|345006050|ref|YP_004808903.1| - 0.026 13.9 1.8 0.026 13.9 1.2 3.3 4 0 0 4 4 4 0 RecR protein Asn_synthase PF00733.16 gi|345006050|ref|YP_004808903.1| - 0.087 12.2 0.1 0.16 11.4 0.1 1.4 1 1 0 1 1 1 0 Asparagine synthase QueC PF06508.8 gi|345006050|ref|YP_004808903.1| - 0.48 9.6 2.5 0.65 9.2 0.0 2.3 2 1 0 2 2 2 0 Queuosine biosynthesis protein QueC Methyltransf_31 PF13847.1 gi|345006051|ref|YP_004808904.1| - 4.5e-12 45.8 0.0 6e-12 45.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|345006051|ref|YP_004808904.1| - 3.7e-10 40.1 0.0 6.3e-10 39.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|345006051|ref|YP_004808904.1| - 3.9e-08 33.8 0.0 5.7e-08 33.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.14 gi|345006051|ref|YP_004808904.1| - 7.7e-08 32.1 0.0 1e-07 31.7 0.0 1.1 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_25 PF13649.1 gi|345006051|ref|YP_004808904.1| - 2.2e-07 31.1 0.0 3.9e-07 30.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|345006051|ref|YP_004808904.1| - 2.3e-07 30.6 0.0 2.8e-07 30.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|345006051|ref|YP_004808904.1| - 4.4e-07 30.3 0.0 7.2e-07 29.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|345006051|ref|YP_004808904.1| - 2e-06 27.1 0.0 2.9e-06 26.5 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_26 PF13659.1 gi|345006051|ref|YP_004808904.1| - 9.3e-06 25.6 0.3 1.7e-05 24.8 0.2 1.7 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_4 PF02390.12 gi|345006051|ref|YP_004808904.1| - 6.7e-05 22.0 0.0 8.9e-05 21.6 0.0 1.1 1 0 0 1 1 1 1 Putative methyltransferase MTS PF05175.9 gi|345006051|ref|YP_004808904.1| - 0.0019 17.6 0.0 0.0031 16.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain FtsJ PF01728.14 gi|345006051|ref|YP_004808904.1| - 0.0053 16.7 0.0 0.0066 16.4 0.0 1.2 1 0 0 1 1 1 1 FtsJ-like methyltransferase DUF2397 PF09660.5 gi|345006051|ref|YP_004808904.1| - 0.089 11.3 0.0 0.12 10.9 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2397) GCD14 PF08704.5 gi|345006051|ref|YP_004808904.1| - 0.1 12.0 0.0 0.12 11.8 0.0 1.1 1 0 0 1 1 1 0 tRNA methyltransferase complex GCD14 subunit Methyltransf_11 PF08241.7 gi|345006053|ref|YP_004808906.1| - 1.4e-17 63.9 0.0 3e-17 62.8 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|345006053|ref|YP_004808906.1| - 5.4e-15 55.3 0.0 7.1e-15 54.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|345006053|ref|YP_004808906.1| - 2.4e-13 50.1 0.0 3.9e-13 49.4 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|345006053|ref|YP_004808906.1| - 3.2e-11 43.5 0.0 6.4e-11 42.5 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|345006053|ref|YP_004808906.1| - 3.2e-10 40.5 0.3 6e-10 39.6 0.2 1.8 1 1 0 1 1 1 1 Methyltransferase domain MetW PF07021.7 gi|345006053|ref|YP_004808906.1| - 2.8e-09 36.6 0.0 4.5e-09 35.9 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Ubie_methyltran PF01209.13 gi|345006053|ref|YP_004808906.1| - 8e-09 34.9 0.0 1.4e-08 34.1 0.0 1.3 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.7 gi|345006053|ref|YP_004808906.1| - 3.5e-08 33.8 0.0 9.7e-08 32.3 0.0 1.8 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|345006053|ref|YP_004808906.1| - 1.4e-06 28.3 2.7 3.6e-06 27.0 1.9 1.9 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_29 PF03141.11 gi|345006053|ref|YP_004808906.1| - 0.00056 18.3 0.0 0.00072 18.0 0.0 1.1 1 0 0 1 1 1 1 Putative S-adenosyl-L-methionine-dependent methyltransferase Methyltransf_32 PF13679.1 gi|345006053|ref|YP_004808906.1| - 0.0013 18.3 0.0 0.0027 17.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|345006053|ref|YP_004808906.1| - 0.0026 17.1 0.0 0.0055 16.1 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase small domain PCMT PF01135.14 gi|345006053|ref|YP_004808906.1| - 0.0026 17.3 0.0 0.0042 16.6 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) PrmA PF06325.8 gi|345006053|ref|YP_004808906.1| - 0.0055 15.8 0.0 0.009 15.1 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) RrnaAD PF00398.15 gi|345006053|ref|YP_004808906.1| - 0.01 14.8 0.0 0.016 14.2 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase CMAS PF02353.15 gi|345006053|ref|YP_004808906.1| - 0.023 13.7 0.0 0.036 13.1 0.0 1.2 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase FtsJ PF01728.14 gi|345006053|ref|YP_004808906.1| - 0.034 14.1 0.0 0.048 13.6 0.0 1.3 1 0 0 1 1 1 0 FtsJ-like methyltransferase DREV PF05219.7 gi|345006053|ref|YP_004808906.1| - 0.11 11.3 0.0 0.15 10.9 0.0 1.3 1 0 0 1 1 1 0 DREV methyltransferase CarboxypepD_reg PF13620.1 gi|345006054|ref|YP_004808907.1| - 2.9e-06 27.2 9.2 5.7e-06 26.3 3.1 3.4 1 1 2 3 3 3 1 Carboxypeptidase regulatory-like domain DUF4480 PF13715.1 gi|345006054|ref|YP_004808907.1| - 0.00018 21.4 0.5 0.00061 19.7 0.1 2.3 2 2 0 2 2 2 1 Domain of unknown function (DUF4480) NPCBM_assoc PF10633.4 gi|345006054|ref|YP_004808907.1| - 0.00063 19.7 7.1 0.001 19.0 1.2 3.6 3 1 0 3 3 3 1 NPCBM-associated, NEW3 domain of alpha-galactosidase Big_1 PF02369.11 gi|345006054|ref|YP_004808907.1| - 0.012 15.5 10.6 0.29 11.0 3.6 3.2 2 1 0 2 2 2 0 Bacterial Ig-like domain (group 1) DUF1034 PF06280.7 gi|345006054|ref|YP_004808907.1| - 0.013 15.9 0.4 0.07 13.5 0.1 2.2 1 1 1 2 2 2 0 Fn3-like domain (DUF1034) AP_endonuc_2 PF01261.19 gi|345006055|ref|YP_004808908.1| - 2.5e-25 89.0 2.3 6.6e-25 87.6 1.1 1.8 2 0 0 2 2 2 1 Xylose isomerase-like TIM barrel BPL_LplA_LipB PF03099.14 gi|345006056|ref|YP_004808909.1| - 7.4e-14 51.8 0.0 1.2e-13 51.1 0.0 1.3 1 0 0 1 1 1 1 Biotin/lipoate A/B protein ligase family DDE_Tnp_1 PF01609.16 gi|345006057|ref|YP_004808910.1| - 0.0083 15.6 0.0 0.035 13.6 0.0 2.0 1 1 0 1 1 1 1 Transposase DDE domain DUF2749 PF10907.3 gi|345006058|ref|YP_004808911.1| - 5 7.0 5.9 0.52 10.2 0.5 1.9 2 1 0 2 2 2 0 Protein of unknown function (DUF2749) FLgD_tudor PF13861.1 gi|345006059|ref|YP_004808912.1| - 0.018 15.0 0.8 0.039 13.9 0.5 1.8 1 1 0 1 1 1 0 FlgD Tudor-like domain DUF3426 PF11906.3 gi|345006059|ref|YP_004808912.1| - 0.052 13.2 0.0 0.055 13.1 0.0 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF3426) A2M_N PF01835.14 gi|345006059|ref|YP_004808912.1| - 0.053 13.7 0.1 0.066 13.4 0.1 1.2 1 0 0 1 1 1 0 MG2 domain HYR PF02494.11 gi|345006059|ref|YP_004808912.1| - 0.14 12.1 1.3 0.28 11.2 0.5 1.8 1 1 1 2 2 2 0 HYR domain KaiC PF06745.8 gi|345006060|ref|YP_004808913.1| - 3.6e-14 52.4 0.0 3.9e-14 52.3 0.0 1.0 1 0 0 1 1 1 1 KaiC IstB_IS21 PF01695.12 gi|345006060|ref|YP_004808913.1| - 9.8e-07 28.3 0.0 1.1e-06 28.2 0.0 1.0 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_25 PF13481.1 gi|345006060|ref|YP_004808913.1| - 8.4e-06 25.3 0.0 9.5e-06 25.1 0.0 1.1 1 0 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|345006060|ref|YP_004808913.1| - 3.1e-05 23.6 0.0 3.5e-05 23.4 0.0 1.1 1 0 0 1 1 1 1 Part of AAA domain AAA_16 PF13191.1 gi|345006060|ref|YP_004808913.1| - 0.0006 19.8 0.0 0.0006 19.8 0.0 1.1 1 0 0 1 1 1 1 AAA ATPase domain AAA_14 PF13173.1 gi|345006060|ref|YP_004808913.1| - 0.0023 17.8 0.0 0.0025 17.7 0.0 1.1 1 0 0 1 1 1 1 AAA domain DnaB_C PF03796.10 gi|345006060|ref|YP_004808913.1| - 0.0037 16.1 0.0 0.0037 16.1 0.0 1.0 1 0 0 1 1 1 1 DnaB-like helicase C terminal domain RecA PF00154.16 gi|345006060|ref|YP_004808913.1| - 0.0042 16.1 0.0 0.0044 16.1 0.0 1.0 1 0 0 1 1 1 1 recA bacterial DNA recombination protein TrwB_AAD_bind PF10412.4 gi|345006060|ref|YP_004808913.1| - 0.011 14.3 0.1 0.02 13.5 0.0 1.4 1 1 1 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain AAA_33 PF13671.1 gi|345006060|ref|YP_004808913.1| - 0.012 15.5 0.0 0.015 15.2 0.0 1.2 1 0 0 1 1 1 0 AAA domain Zeta_toxin PF06414.7 gi|345006060|ref|YP_004808913.1| - 0.012 14.6 0.0 0.014 14.5 0.0 1.1 1 0 0 1 1 1 0 Zeta toxin AAA PF00004.24 gi|345006060|ref|YP_004808913.1| - 0.015 15.4 0.0 0.017 15.3 0.0 1.2 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) GvpD PF07088.6 gi|345006060|ref|YP_004808913.1| - 0.016 13.5 0.0 0.017 13.4 0.0 1.0 1 0 0 1 1 1 0 GvpD gas vesicle protein AAA_22 PF13401.1 gi|345006060|ref|YP_004808913.1| - 0.018 15.2 0.0 0.019 15.0 0.0 1.2 1 1 0 1 1 1 0 AAA domain cobW PF02492.14 gi|345006060|ref|YP_004808913.1| - 0.018 14.4 0.0 0.02 14.3 0.0 1.0 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_24 PF13479.1 gi|345006060|ref|YP_004808913.1| - 0.021 14.4 0.0 0.023 14.2 0.0 1.1 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.1 gi|345006060|ref|YP_004808913.1| - 0.023 15.0 0.0 0.026 14.8 0.0 1.2 1 0 0 1 1 1 0 AAA domain KTI12 PF08433.5 gi|345006060|ref|YP_004808913.1| - 0.028 13.6 0.0 0.029 13.6 0.0 1.0 1 0 0 1 1 1 0 Chromatin associated protein KTI12 AAA_5 PF07728.9 gi|345006060|ref|YP_004808913.1| - 0.042 13.5 0.0 0.043 13.5 0.0 1.1 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) CPT PF07931.7 gi|345006060|ref|YP_004808913.1| - 0.045 13.3 0.0 0.045 13.3 0.0 1.0 1 0 0 1 1 1 0 Chloramphenicol phosphotransferase-like protein ArgK PF03308.11 gi|345006060|ref|YP_004808913.1| - 0.05 12.3 0.0 0.055 12.2 0.0 1.1 1 0 0 1 1 1 0 ArgK protein AAA_17 PF13207.1 gi|345006060|ref|YP_004808913.1| - 0.063 14.0 0.1 0.072 13.9 0.1 1.3 1 1 0 1 1 1 0 AAA domain DUF2075 PF09848.4 gi|345006060|ref|YP_004808913.1| - 0.077 11.9 0.0 0.077 11.9 0.0 1.0 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) AAA_30 PF13604.1 gi|345006060|ref|YP_004808913.1| - 0.093 12.3 0.0 0.099 12.2 0.0 1.1 1 0 0 1 1 1 0 AAA domain RNA_helicase PF00910.17 gi|345006060|ref|YP_004808913.1| - 0.11 12.6 0.0 0.12 12.5 0.0 1.2 1 1 0 1 1 1 0 RNA helicase TIP49 PF06068.8 gi|345006060|ref|YP_004808913.1| - 0.13 10.9 0.0 0.13 10.8 0.0 1.1 1 0 0 1 1 1 0 TIP49 C-terminus NTPase_1 PF03266.10 gi|345006060|ref|YP_004808913.1| - 0.13 11.9 0.1 0.14 11.9 0.1 1.3 1 1 0 1 1 1 0 NTPase Usp PF00582.21 gi|345006061|ref|YP_004808914.1| - 4.1e-08 33.5 0.5 1.1e-07 32.0 0.3 1.6 1 1 0 1 1 1 1 Universal stress protein family DUF2574 PF10836.3 gi|345006061|ref|YP_004808914.1| - 0.038 13.6 0.0 0.066 12.9 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2574) PPR PF01535.15 gi|345006062|ref|YP_004808915.1| - 0.14 12.1 0.1 0.41 10.7 0.0 1.7 2 0 0 2 2 2 0 PPR repeat PPR_1 PF12854.2 gi|345006062|ref|YP_004808915.1| - 0.17 11.3 0.9 1.8 8.1 0.0 2.2 2 0 0 2 2 2 0 PPR repeat RIO1 PF01163.17 gi|345006063|ref|YP_004808916.1| - 4.4e-42 143.5 0.2 6.5e-42 143.0 0.1 1.1 1 0 0 1 1 1 1 RIO1 family Rio2_N PF09202.6 gi|345006063|ref|YP_004808916.1| - 1.4e-26 92.3 0.1 2.9e-26 91.3 0.1 1.6 1 0 0 1 1 1 1 Rio2, N-terminal APH PF01636.18 gi|345006063|ref|YP_004808916.1| - 4.5e-06 26.5 3.0 0.038 13.7 0.0 3.2 2 1 1 3 3 3 2 Phosphotransferase enzyme family Pkinase PF00069.20 gi|345006063|ref|YP_004808916.1| - 0.028 13.5 0.0 0.044 12.9 0.0 1.3 1 0 0 1 1 1 0 Protein kinase domain Lactamase_B PF00753.22 gi|345006065|ref|YP_004808918.1| - 4.8e-23 81.8 6.5 6.2e-23 81.4 4.5 1.1 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|345006065|ref|YP_004808918.1| - 0.0064 16.0 0.5 0.012 15.2 0.3 1.5 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.1 gi|345006065|ref|YP_004808918.1| - 0.085 12.5 0.1 0.12 12.1 0.1 1.3 1 1 0 1 1 1 0 Beta-lactamase superfamily domain DNA_ligase_aden PF01653.13 gi|345006066|ref|YP_004808919.1| - 8.8e-97 323.8 0.0 4.7e-75 252.4 0.0 2.1 2 0 0 2 2 2 2 NAD-dependent DNA ligase adenylation domain DNA_ligase_OB PF03120.11 gi|345006066|ref|YP_004808919.1| - 4.6e-28 96.7 2.2 8.1e-28 95.9 1.5 1.4 1 0 0 1 1 1 1 NAD-dependent DNA ligase OB-fold domain HHH_5 PF14520.1 gi|345006066|ref|YP_004808919.1| - 3.3e-22 78.3 6.8 2.5e-12 46.7 0.4 3.2 3 0 0 3 3 3 2 Helix-hairpin-helix domain HHH_2 PF12826.2 gi|345006066|ref|YP_004808919.1| - 1.8e-19 69.3 1.9 5.8e-16 58.1 0.1 2.7 2 0 0 2 2 2 2 Helix-hairpin-helix motif BRCT PF00533.21 gi|345006066|ref|YP_004808919.1| - 1.1e-09 38.3 0.0 2e-09 37.4 0.0 1.4 1 0 0 1 1 1 1 BRCA1 C Terminus (BRCT) domain HHH PF00633.18 gi|345006066|ref|YP_004808919.1| - 1.3e-08 34.0 3.8 0.047 13.4 0.0 4.8 4 0 0 4 4 4 3 Helix-hairpin-helix motif DNA_ligase_ZBD PF03119.11 gi|345006066|ref|YP_004808919.1| - 2.2e-07 30.4 4.0 2.2e-07 30.4 2.7 2.2 3 0 0 3 3 3 1 NAD-dependent DNA ligase C4 zinc finger domain PTCB-BRCT PF12738.2 gi|345006066|ref|YP_004808919.1| - 0.0024 17.6 0.0 0.0052 16.6 0.0 1.6 1 0 0 1 1 1 1 twin BRCT domain 5_3_exonuc PF01367.15 gi|345006066|ref|YP_004808919.1| - 0.0077 16.4 0.1 1.2 9.3 0.0 3.4 3 1 0 3 3 3 1 5'-3' exonuclease, C-terminal SAM fold HHH_8 PF14716.1 gi|345006066|ref|YP_004808919.1| - 0.012 15.7 0.6 12 6.1 0.0 4.6 3 1 2 5 5 5 0 Helix-hairpin-helix domain Transposase_20 PF02371.11 gi|345006066|ref|YP_004808919.1| - 0.11 12.6 0.1 2.4 8.3 0.0 2.8 1 1 1 2 2 2 0 Transposase IS116/IS110/IS902 family Fer2 PF00111.22 gi|345006067|ref|YP_004808920.1| - 3.5e-13 49.0 0.3 6.1e-13 48.3 0.2 1.4 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain MatE PF01554.13 gi|345006068|ref|YP_004808921.1| - 8.2e-65 217.3 28.6 2.7e-32 111.6 10.2 2.5 2 0 0 2 2 2 2 MatE Polysacc_synt_C PF14667.1 gi|345006068|ref|YP_004808921.1| - 3.7e-10 39.7 8.4 3.7e-10 39.7 5.9 4.3 4 2 0 4 4 4 1 Polysaccharide biosynthesis C-terminal domain MVIN PF03023.9 gi|345006068|ref|YP_004808921.1| - 1.3e-06 27.1 21.6 0.00076 18.0 5.5 2.3 1 1 1 2 2 2 2 MviN-like protein zf-CHY PF05495.7 gi|345006069|ref|YP_004808922.1| - 4.4e-16 58.7 10.8 6.9e-16 58.1 7.5 1.3 1 0 0 1 1 1 1 CHY zinc finger Cytochrome_C7 PF14522.1 gi|345006069|ref|YP_004808922.1| - 0.23 11.1 7.7 0.38 10.4 5.4 1.5 1 0 0 1 1 1 0 Cytochrome c7 Reeler PF02014.11 gi|345006070|ref|YP_004808923.1| - 0.024 14.9 0.1 0.078 13.2 0.0 1.9 2 0 0 2 2 2 0 Reeler domain DUF3529 PF12046.3 gi|345006070|ref|YP_004808923.1| - 0.04 12.9 0.1 0.14 11.2 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF3529) Gifsy-2 PF13856.1 gi|345006070|ref|YP_004808923.1| - 0.14 12.3 0.1 24 5.1 0.0 3.2 2 1 1 3 3 3 0 ATP-binding sugar transporter from pro-phage MC1 PF05854.6 gi|345006072|ref|YP_004808925.1| - 7.8e-45 150.7 0.3 9.3e-45 150.5 0.2 1.0 1 0 0 1 1 1 1 Non-histone chromosomal protein MC1 SymE_toxin PF08845.5 gi|345006073|ref|YP_004808926.1| - 0.0013 18.5 0.0 0.0013 18.5 0.0 1.1 1 0 0 1 1 1 1 Toxin SymE, type I toxin-antitoxin system Antitoxin-MazE PF04014.13 gi|345006073|ref|YP_004808926.1| - 0.029 14.0 0.3 0.045 13.4 0.2 1.4 1 0 0 1 1 1 0 Antidote-toxin recognition MazE DNA_ligase_OB PF03120.11 gi|345006073|ref|YP_004808926.1| - 0.12 12.0 0.1 0.15 11.7 0.0 1.2 1 0 0 1 1 1 0 NAD-dependent DNA ligase OB-fold domain DHO_dh PF01180.16 gi|345006074|ref|YP_004808927.1| - 9.6e-82 274.2 0.0 1.1e-81 274.0 0.0 1.0 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase NMO PF03060.10 gi|345006074|ref|YP_004808927.1| - 9.9e-05 21.6 0.7 0.00018 20.7 0.5 1.3 1 0 0 1 1 1 1 Nitronate monooxygenase PcrB PF01884.12 gi|345006074|ref|YP_004808927.1| - 0.0065 15.7 0.9 0.025 13.8 0.1 1.9 2 0 0 2 2 2 1 PcrB family Helicase_C_2 PF13307.1 gi|345006076|ref|YP_004808929.1| - 3.6e-34 118.1 0.0 1.1e-33 116.5 0.0 1.8 1 0 0 1 1 1 1 Helicase C-terminal domain DEAD_2 PF06733.10 gi|345006076|ref|YP_004808929.1| - 3.5e-23 81.8 2.9 1.6e-22 79.6 2.0 1.9 1 1 0 1 1 1 1 DEAD_2 DEAD PF00270.24 gi|345006076|ref|YP_004808929.1| - 2.7e-09 36.7 0.0 1.8e-06 27.5 0.0 3.0 3 0 0 3 3 3 1 DEAD/DEAH box helicase ResIII PF04851.10 gi|345006076|ref|YP_004808929.1| - 1.7e-05 24.7 0.5 0.00046 20.0 0.3 2.5 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit Zot PF05707.7 gi|345006076|ref|YP_004808929.1| - 3.1e-05 23.5 0.0 0.0057 16.1 0.0 2.5 2 0 0 2 2 2 1 Zonular occludens toxin (Zot) AAA_16 PF13191.1 gi|345006076|ref|YP_004808929.1| - 0.0001 22.3 5.4 0.00061 19.8 3.8 2.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_19 PF13245.1 gi|345006076|ref|YP_004808929.1| - 0.00023 20.8 0.0 0.00077 19.1 0.0 1.9 1 0 0 1 1 1 1 Part of AAA domain DUF2075 PF09848.4 gi|345006076|ref|YP_004808929.1| - 0.00026 20.0 0.8 0.018 14.0 0.0 2.3 1 1 0 2 2 2 1 Uncharacterized conserved protein (DUF2075) KaiC PF06745.8 gi|345006076|ref|YP_004808929.1| - 0.0025 16.9 0.0 0.0045 16.1 0.0 1.4 1 0 0 1 1 1 1 KaiC AAA PF00004.24 gi|345006076|ref|YP_004808929.1| - 0.0031 17.7 0.0 0.91 9.7 0.0 2.7 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_11 PF13086.1 gi|345006076|ref|YP_004808929.1| - 0.011 15.2 0.4 0.026 14.1 0.1 1.6 2 0 0 2 2 2 0 AAA domain PhoH PF02562.11 gi|345006076|ref|YP_004808929.1| - 0.034 13.3 0.0 0.084 12.1 0.0 1.6 1 0 0 1 1 1 0 PhoH-like protein AAA_22 PF13401.1 gi|345006076|ref|YP_004808929.1| - 0.038 14.1 0.8 1.1 9.4 0.1 2.6 2 1 0 2 2 2 0 AAA domain Mg_chelatase PF01078.16 gi|345006076|ref|YP_004808929.1| - 0.12 11.5 0.0 0.24 10.5 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI p450 PF00067.17 gi|345006077|ref|YP_004808930.1| - 2.2e-86 290.2 0.0 2.7e-86 289.9 0.0 1.0 1 0 0 1 1 1 1 Cytochrome P450 2_5_RNA_ligase2 PF13563.1 gi|345006078|ref|YP_004808931.1| - 6e-16 58.5 0.0 1.1e-15 57.7 0.0 1.3 1 1 0 1 1 1 1 2'-5' RNA ligase superfamily LigT_PEase PF02834.11 gi|345006078|ref|YP_004808931.1| - 1.9e-08 34.1 0.1 0.00043 20.1 0.0 2.8 2 1 0 2 2 2 2 LigT like Phosphoesterase AKAP7_NLS PF10469.4 gi|345006078|ref|YP_004808931.1| - 6.1e-05 22.8 0.0 7.5e-05 22.5 0.0 1.1 1 0 0 1 1 1 1 AKAP7 2'5' RNA ligase-like domain TcpE PF12648.2 gi|345006079|ref|YP_004808932.1| - 0.026 14.6 2.2 0.028 14.5 1.5 1.1 1 0 0 1 1 1 0 TcpE family UPF0118 PF01594.11 gi|345006079|ref|YP_004808932.1| - 0.045 12.7 8.7 0.051 12.5 6.0 1.0 1 0 0 1 1 1 0 Domain of unknown function DUF20 BIV_Env PF05858.7 gi|345006079|ref|YP_004808932.1| - 0.27 9.1 5.0 0.27 9.1 3.5 1.0 1 0 0 1 1 1 0 Bovine immunodeficiency virus surface protein (SU) DUF2755 PF10954.3 gi|345006079|ref|YP_004808932.1| - 0.58 9.9 5.7 0.18 11.5 2.0 1.6 1 1 1 2 2 2 0 Protein of unknown function (DUF2755) Phageshock_PspG PF09583.5 gi|345006079|ref|YP_004808932.1| - 2.2 8.3 19.3 0.19 11.7 5.3 2.0 1 1 1 2 2 2 0 Phage shock protein G (Phageshock_PspG) Consortin_C PF15281.1 gi|345006079|ref|YP_004808932.1| - 7 6.1 7.1 0.16 11.4 0.6 1.5 2 0 0 2 2 2 0 Consortin C-terminus CRPA PF05745.6 gi|345006079|ref|YP_004808932.1| - 8.2 6.2 8.0 10 5.8 5.5 1.1 1 0 0 1 1 1 0 Chlamydia 15 kDa cysteine-rich outer membrane protein (CRPA) MarR_2 PF12802.2 gi|345006080|ref|YP_004808933.1| - 0.0054 16.3 0.1 0.011 15.4 0.1 1.4 1 0 0 1 1 1 1 MarR family ERM PF00769.14 gi|345006081|ref|YP_004808934.1| - 0.015 14.8 2.2 0.02 14.4 1.5 1.2 1 0 0 1 1 1 0 Ezrin/radixin/moesin family M PF02370.11 gi|345006081|ref|YP_004808934.1| - 0.04 14.2 1.4 0.17 12.3 0.4 2.5 2 0 0 2 2 2 0 M protein repeat SlyX PF04102.7 gi|345006081|ref|YP_004808934.1| - 1.2 9.5 3.3 26 5.2 0.5 3.2 2 1 0 2 2 2 0 SlyX UvrB PF12344.3 gi|345006082|ref|YP_004808935.1| - 7.3e-20 70.2 1.2 1.3e-19 69.3 0.9 1.5 1 0 0 1 1 1 1 Ultra-violet resistance protein B Helicase_C PF00271.26 gi|345006082|ref|YP_004808935.1| - 4.8e-15 55.1 1.5 5.7e-15 54.9 0.0 2.0 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|345006082|ref|YP_004808935.1| - 2.9e-09 37.0 0.1 4.8e-08 33.0 0.0 2.3 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit UVR PF02151.14 gi|345006082|ref|YP_004808935.1| - 6.3e-09 35.0 6.3 6.3e-09 35.0 4.4 2.7 3 0 0 3 3 3 1 UvrB/uvrC motif DEAD PF00270.24 gi|345006082|ref|YP_004808935.1| - 1.8e-05 24.3 0.0 0.00064 19.2 0.0 3.0 3 0 0 3 3 3 1 DEAD/DEAH box helicase UB2H PF14814.1 gi|345006082|ref|YP_004808935.1| - 0.009 15.7 0.0 0.064 12.9 0.0 2.4 1 1 0 1 1 1 1 Bifunctional transglycosylase second domain DUF87 PF01935.12 gi|345006082|ref|YP_004808935.1| - 0.045 13.5 0.7 0.21 11.3 0.1 2.3 2 0 0 2 2 2 0 Domain of unknown function DUF87 MobC PF05713.6 gi|345006083|ref|YP_004808936.1| - 0.14 12.1 0.4 4.4 7.3 0.0 2.2 2 0 0 2 2 2 0 Bacterial mobilisation protein (MobC) Rhodanese PF00581.15 gi|345006085|ref|YP_004808938.1| - 1.3e-38 131.8 0.3 3.5e-19 69.2 0.0 2.1 2 0 0 2 2 2 2 Rhodanese-like domain Rhodanese PF00581.15 gi|345006086|ref|YP_004808939.1| - 3.1e-35 120.9 0.0 3.2e-17 62.8 0.0 2.1 2 0 0 2 2 2 2 Rhodanese-like domain UPF0118 PF01594.11 gi|345006087|ref|YP_004808940.1| - 9.6e-32 110.2 35.5 1.4e-31 109.6 24.6 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF20 SBP_bac_6 PF13343.1 gi|345006088|ref|YP_004808941.1| - 6.1e-20 71.5 0.0 8.6e-20 71.0 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.1 gi|345006088|ref|YP_004808941.1| - 2.5e-16 60.2 0.7 3.3e-16 59.8 0.5 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein TAT_signal PF10518.4 gi|345006088|ref|YP_004808941.1| - 0.0024 17.7 2.6 0.0055 16.6 1.8 1.6 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence SBP_bac_11 PF13531.1 gi|345006088|ref|YP_004808941.1| - 0.0057 16.3 0.0 0.0092 15.6 0.0 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein Methyltransf_11 PF08241.7 gi|345006089|ref|YP_004808942.1| - 1.9e-21 76.3 0.0 3.5e-21 75.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|345006089|ref|YP_004808942.1| - 2.8e-15 56.2 0.0 3.6e-15 55.8 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|345006089|ref|YP_004808942.1| - 4.5e-14 52.4 0.0 5.9e-14 52.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|345006089|ref|YP_004808942.1| - 3.7e-13 49.7 0.0 7.5e-13 48.7 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|345006089|ref|YP_004808942.1| - 1.3e-10 41.8 0.0 3.6e-10 40.3 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|345006089|ref|YP_004808942.1| - 1.8e-10 40.8 0.2 4.6e-10 39.5 0.1 1.7 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|345006089|ref|YP_004808942.1| - 9.7e-10 38.8 0.0 1.5e-09 38.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|345006089|ref|YP_004808942.1| - 2.6e-09 36.5 0.0 4.4e-09 35.8 0.0 1.3 2 0 0 2 2 2 1 ubiE/COQ5 methyltransferase family Methyltransf_9 PF08003.6 gi|345006089|ref|YP_004808942.1| - 7.2e-06 24.9 0.0 9.6e-06 24.5 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) MetW PF07021.7 gi|345006089|ref|YP_004808942.1| - 5.7e-05 22.5 0.0 9.4e-05 21.8 0.0 1.3 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW DUF2934 PF11154.3 gi|345006089|ref|YP_004808942.1| - 0.0041 16.4 3.2 0.0091 15.3 2.2 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF2934) PCMT PF01135.14 gi|345006089|ref|YP_004808942.1| - 0.0095 15.4 0.0 0.019 14.5 0.0 1.6 1 1 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) CMAS PF02353.15 gi|345006089|ref|YP_004808942.1| - 0.046 12.8 0.0 0.065 12.2 0.0 1.3 1 1 0 1 1 1 0 Mycolic acid cyclopropane synthetase N6_N4_Mtase PF01555.13 gi|345006089|ref|YP_004808942.1| - 0.07 12.6 0.0 6.6 6.1 0.0 2.2 2 0 0 2 2 2 0 DNA methylase Methyltransf_2 PF00891.13 gi|345006089|ref|YP_004808942.1| - 0.074 12.2 0.0 0.11 11.6 0.0 1.3 1 0 0 1 1 1 0 O-methyltransferase Methyltransf_24 PF13578.1 gi|345006089|ref|YP_004808942.1| - 0.11 13.3 0.0 0.27 12.0 0.0 1.7 2 0 0 2 2 1 0 Methyltransferase domain PrmA PF06325.8 gi|345006089|ref|YP_004808942.1| - 0.12 11.4 0.0 0.22 10.5 0.0 1.4 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) KaiC PF06745.8 gi|345006090|ref|YP_004808943.1| - 0.0008 18.5 0.0 0.001 18.2 0.0 1.1 1 0 0 1 1 1 1 KaiC DUF2072 PF09845.4 gi|345006093|ref|YP_004808946.1| - 3.4e-26 91.7 15.5 2.6e-20 72.6 10.7 3.1 1 1 0 1 1 1 1 Zn-ribbon containing protein (DUF2072) zinc_ribbon_2 PF13240.1 gi|345006093|ref|YP_004808946.1| - 0.047 13.1 4.4 0.086 12.3 3.0 1.5 1 0 0 1 1 1 0 zinc-ribbon domain SdrG_C_C PF10425.4 gi|345006093|ref|YP_004808946.1| - 0.052 13.5 0.0 0.091 12.7 0.0 1.3 1 0 0 1 1 1 0 C-terminus of bacterial fibrinogen-binding adhesin Zn-ribbon_8 PF09723.5 gi|345006093|ref|YP_004808946.1| - 0.16 11.9 2.8 0.52 10.3 1.9 1.9 1 1 0 1 1 1 0 Zinc ribbon domain HypA PF01155.14 gi|345006093|ref|YP_004808946.1| - 0.17 11.5 0.6 0.27 10.9 0.4 1.3 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family zf-ribbon_3 PF13248.1 gi|345006093|ref|YP_004808946.1| - 0.24 10.6 3.0 5.5 6.3 0.3 2.3 2 0 0 2 2 2 0 zinc-ribbon domain DUF1451 PF07295.6 gi|345006093|ref|YP_004808946.1| - 0.93 9.2 7.4 0.078 12.7 0.9 2.2 3 0 0 3 3 3 0 Protein of unknown function (DUF1451) TF_Zn_Ribbon PF08271.7 gi|345006093|ref|YP_004808946.1| - 1.8 7.9 4.8 6.1 6.2 0.3 2.5 1 1 1 2 2 2 0 TFIIB zinc-binding zf-C2H2_6 PF13912.1 gi|345006093|ref|YP_004808946.1| - 5.1 7.1 5.2 0.35 10.8 0.2 1.7 2 0 0 2 2 2 0 C2H2-type zinc finger DUF2073 PF09846.4 gi|345006094|ref|YP_004808947.1| - 3.5e-47 158.3 0.7 4.2e-47 158.0 0.5 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2073) MMR_HSR1 PF01926.18 gi|345006095|ref|YP_004808948.1| - 1.1e-14 54.4 0.0 1.5e-14 53.9 0.0 1.2 1 0 0 1 1 1 1 50S ribosome-binding GTPase GTP_EFTU PF00009.22 gi|345006095|ref|YP_004808948.1| - 1.5e-11 44.1 0.4 2.4e-05 23.8 0.0 2.6 2 1 0 2 2 2 2 Elongation factor Tu GTP binding domain Arf PF00025.16 gi|345006095|ref|YP_004808948.1| - 4.3e-06 26.0 0.0 0.0019 17.4 0.1 2.7 1 1 1 3 3 3 1 ADP-ribosylation factor family FeoB_N PF02421.13 gi|345006095|ref|YP_004808948.1| - 1.7e-05 24.1 0.6 0.00025 20.3 0.4 2.5 1 1 0 1 1 1 1 Ferrous iron transport protein B AAA_17 PF13207.1 gi|345006095|ref|YP_004808948.1| - 2.3e-05 25.2 0.2 5e-05 24.0 0.1 1.7 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|345006095|ref|YP_004808948.1| - 6.7e-05 23.2 0.0 0.00013 22.2 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|345006095|ref|YP_004808948.1| - 0.00018 21.5 0.0 0.00032 20.7 0.0 1.6 1 1 0 1 1 1 1 AAA ATPase domain Septin PF00735.13 gi|345006095|ref|YP_004808948.1| - 0.00085 18.4 0.0 0.0012 17.9 0.0 1.4 1 1 0 1 1 1 1 Septin SRPRB PF09439.5 gi|345006095|ref|YP_004808948.1| - 0.00096 18.4 0.0 0.07 12.3 0.0 2.2 2 0 0 2 2 2 1 Signal recognition particle receptor beta subunit Miro PF08477.8 gi|345006095|ref|YP_004808948.1| - 0.0012 19.3 0.0 0.0055 17.2 0.0 1.9 1 1 0 1 1 1 1 Miro-like protein ArgK PF03308.11 gi|345006095|ref|YP_004808948.1| - 0.0017 17.1 0.9 0.1 11.3 0.0 2.9 2 1 0 2 2 2 1 ArgK protein Dynamin_N PF00350.18 gi|345006095|ref|YP_004808948.1| - 0.003 17.4 0.0 0.33 10.7 0.0 2.3 1 1 0 2 2 2 1 Dynamin family AAA PF00004.24 gi|345006095|ref|YP_004808948.1| - 0.0034 17.5 0.1 0.01 16.0 0.0 2.0 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) NB-ARC PF00931.17 gi|345006095|ref|YP_004808948.1| - 0.0037 16.1 0.0 0.0066 15.3 0.0 1.4 1 0 0 1 1 1 1 NB-ARC domain ATP-synt_ab PF00006.20 gi|345006095|ref|YP_004808948.1| - 0.0038 16.7 0.0 0.0041 16.6 0.0 1.4 1 1 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain RNA_helicase PF00910.17 gi|345006095|ref|YP_004808948.1| - 0.0051 16.9 0.0 0.012 15.8 0.0 1.7 2 0 0 2 2 2 1 RNA helicase AAA_28 PF13521.1 gi|345006095|ref|YP_004808948.1| - 0.0063 16.4 0.1 0.064 13.2 0.0 2.0 1 1 1 2 2 2 1 AAA domain AAA_19 PF13245.1 gi|345006095|ref|YP_004808948.1| - 0.012 15.3 0.3 0.061 13.0 0.0 2.1 2 0 0 2 2 2 0 Part of AAA domain AAA_22 PF13401.1 gi|345006095|ref|YP_004808948.1| - 0.013 15.6 0.0 0.021 14.9 0.0 1.5 1 1 0 1 1 1 0 AAA domain MMR_HSR1_C PF08438.5 gi|345006095|ref|YP_004808948.1| - 0.03 14.5 0.1 0.082 13.1 0.0 1.7 2 0 0 2 2 2 0 GTPase of unknown function C-terminal ABC_tran PF00005.22 gi|345006095|ref|YP_004808948.1| - 0.031 14.5 0.0 0.043 14.0 0.0 1.5 1 1 0 1 1 1 0 ABC transporter cobW PF02492.14 gi|345006095|ref|YP_004808948.1| - 0.032 13.6 0.2 3.7 6.9 0.0 2.4 1 1 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain MobB PF03205.9 gi|345006095|ref|YP_004808948.1| - 0.039 13.6 0.0 0.25 11.0 0.0 2.2 2 1 1 3 3 3 0 Molybdopterin guanine dinucleotide synthesis protein B Zeta_toxin PF06414.7 gi|345006095|ref|YP_004808948.1| - 0.046 12.8 0.1 0.11 11.5 0.0 1.6 2 0 0 2 2 2 0 Zeta toxin Arch_ATPase PF01637.13 gi|345006095|ref|YP_004808948.1| - 0.047 13.3 0.0 0.084 12.5 0.0 1.6 1 1 0 1 1 1 0 Archaeal ATPase AAA_14 PF13173.1 gi|345006095|ref|YP_004808948.1| - 0.052 13.4 0.0 0.1 12.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.1 gi|345006095|ref|YP_004808948.1| - 0.06 12.7 0.0 0.088 12.1 0.0 1.7 1 1 0 1 1 1 0 AAA domain NACHT PF05729.7 gi|345006095|ref|YP_004808948.1| - 0.065 12.8 0.0 0.1 12.2 0.0 1.3 1 0 0 1 1 1 0 NACHT domain RuvB_N PF05496.7 gi|345006095|ref|YP_004808948.1| - 0.088 11.8 0.0 0.18 10.8 0.0 1.4 1 0 0 1 1 1 0 Holliday junction DNA helicase ruvB N-terminus AAA_23 PF13476.1 gi|345006095|ref|YP_004808948.1| - 0.12 12.7 0.0 0.18 12.0 0.0 1.5 1 1 0 1 1 1 0 AAA domain Cdc6_C PF09079.6 gi|345006096|ref|YP_004808949.1| - 2e-27 94.6 0.1 5.8e-27 93.2 0.1 1.8 1 0 0 1 1 1 1 CDC6, C terminal AAA_16 PF13191.1 gi|345006096|ref|YP_004808949.1| - 1.4e-12 47.9 1.1 7.2e-11 42.4 0.0 2.2 2 0 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.1 gi|345006096|ref|YP_004808949.1| - 2.4e-09 37.4 0.2 5.3e-08 33.0 0.2 2.5 1 1 0 1 1 1 1 AAA domain AAA PF00004.24 gi|345006096|ref|YP_004808949.1| - 4.2e-08 33.4 0.0 0.0028 17.8 0.0 2.5 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) Arch_ATPase PF01637.13 gi|345006096|ref|YP_004808949.1| - 0.00024 20.8 0.1 0.00081 19.1 0.0 1.7 1 1 0 1 1 1 1 Archaeal ATPase AAA_2 PF07724.9 gi|345006096|ref|YP_004808949.1| - 0.00025 20.9 0.0 0.0041 17.0 0.0 2.3 1 1 0 1 1 1 1 AAA domain (Cdc48 subfamily) NB-ARC PF00931.17 gi|345006096|ref|YP_004808949.1| - 0.00048 19.0 0.0 0.00082 18.3 0.0 1.4 1 0 0 1 1 1 1 NB-ARC domain T2SE PF00437.15 gi|345006096|ref|YP_004808949.1| - 0.00063 18.7 0.0 0.0012 17.7 0.0 1.5 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_17 PF13207.1 gi|345006096|ref|YP_004808949.1| - 0.00089 20.0 0.1 0.0028 18.4 0.0 1.9 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|345006096|ref|YP_004808949.1| - 0.00098 19.4 0.2 0.0035 17.6 0.1 2.1 1 1 1 2 2 2 1 AAA domain DEAD PF00270.24 gi|345006096|ref|YP_004808949.1| - 0.0014 18.1 1.6 0.0043 16.5 0.1 2.4 2 1 0 2 2 2 1 DEAD/DEAH box helicase Sigma54_activat PF00158.21 gi|345006096|ref|YP_004808949.1| - 0.0026 17.2 0.0 0.0067 15.9 0.0 1.6 1 0 0 1 1 1 1 Sigma-54 interaction domain DUF815 PF05673.8 gi|345006096|ref|YP_004808949.1| - 0.0035 16.2 0.0 0.0067 15.3 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF815) AAA_25 PF13481.1 gi|345006096|ref|YP_004808949.1| - 0.0041 16.5 0.3 0.12 11.7 0.2 2.4 1 1 0 1 1 1 1 AAA domain RuvB_N PF05496.7 gi|345006096|ref|YP_004808949.1| - 0.0065 15.5 0.0 0.015 14.3 0.0 1.5 1 0 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus DUF2278 PF10042.4 gi|345006096|ref|YP_004808949.1| - 0.022 14.4 0.0 0.05 13.3 0.0 1.5 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2278) ABC_tran PF00005.22 gi|345006096|ref|YP_004808949.1| - 0.024 14.9 0.0 0.1 12.8 0.0 2.0 2 0 0 2 2 2 0 ABC transporter AAA_24 PF13479.1 gi|345006096|ref|YP_004808949.1| - 0.034 13.7 0.0 0.078 12.5 0.0 1.7 1 0 0 1 1 1 0 AAA domain FtsK_SpoIIIE PF01580.13 gi|345006096|ref|YP_004808949.1| - 0.072 12.5 0.5 0.47 9.8 0.0 2.2 2 0 0 2 2 2 0 FtsK/SpoIIIE family KAP_NTPase PF07693.9 gi|345006096|ref|YP_004808949.1| - 0.079 11.9 0.1 0.8 8.6 0.0 2.1 1 1 0 2 2 2 0 KAP family P-loop domain RNA_helicase PF00910.17 gi|345006096|ref|YP_004808949.1| - 0.12 12.5 0.0 0.31 11.2 0.0 1.7 1 0 0 1 1 1 0 RNA helicase Peptidase_S24 PF00717.18 gi|345006097|ref|YP_004808950.1| - 0.00091 18.8 0.1 0.0016 18.0 0.1 1.4 1 0 0 1 1 1 1 Peptidase S24-like PepSY_TM_1 PF13172.1 gi|345006097|ref|YP_004808950.1| - 0.59 9.9 2.2 1.1 9.0 1.6 1.5 1 0 0 1 1 1 0 PepSY-associated TM helix Peptidase_S9 PF00326.16 gi|345006098|ref|YP_004808951.1| - 6.3e-56 188.9 0.7 1e-55 188.2 0.5 1.3 1 0 0 1 1 1 1 Prolyl oligopeptidase family PD40 PF07676.7 gi|345006098|ref|YP_004808951.1| - 8.4e-17 60.4 10.6 7.6e-07 28.6 0.4 5.2 5 0 0 5 5 5 4 WD40-like Beta Propeller Repeat Abhydrolase_6 PF12697.2 gi|345006098|ref|YP_004808951.1| - 3.6e-09 36.8 4.8 3.9e-08 33.4 3.3 2.2 1 1 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_5 PF12695.2 gi|345006098|ref|YP_004808951.1| - 1.1e-08 34.9 0.1 2.6e-08 33.7 0.1 1.7 1 0 0 1 1 1 1 Alpha/beta hydrolase family DPPIV_N PF00930.16 gi|345006098|ref|YP_004808951.1| - 3e-06 26.0 1.4 0.44 9.0 0.0 4.9 2 1 1 4 4 4 1 Dipeptidyl peptidase IV (DPP IV) N-terminal region AXE1 PF05448.7 gi|345006098|ref|YP_004808951.1| - 2.4e-05 23.0 0.3 0.0082 14.6 0.0 2.1 2 0 0 2 2 2 2 Acetyl xylan esterase (AXE1) DLH PF01738.13 gi|345006098|ref|YP_004808951.1| - 0.002 17.4 0.0 0.0054 16.0 0.0 1.6 1 1 0 1 1 1 1 Dienelactone hydrolase family Abhydrolase_2 PF02230.11 gi|345006098|ref|YP_004808951.1| - 0.006 16.0 0.0 0.011 15.1 0.0 1.3 1 0 0 1 1 1 1 Phospholipase/Carboxylesterase Abhydrolase_4 PF08386.5 gi|345006098|ref|YP_004808951.1| - 0.042 13.7 0.0 0.095 12.6 0.0 1.5 1 0 0 1 1 1 0 TAP-like protein Pectate_lyase22 PF14583.1 gi|345006098|ref|YP_004808951.1| - 0.052 11.9 0.0 0.39 9.1 0.0 2.2 2 0 0 2 2 2 0 Oligogalacturonate lyase BAAT_C PF08840.6 gi|345006098|ref|YP_004808951.1| - 0.089 12.4 0.0 0.87 9.2 0.0 2.0 2 0 0 2 2 2 0 BAAT / Acyl-CoA thioester hydrolase C terminal RHH_1 PF01402.16 gi|345006100|ref|YP_004808953.1| - 0.017 14.9 0.0 0.045 13.6 0.0 1.8 2 1 0 2 2 2 0 Ribbon-helix-helix protein, copG family DUF3960 PF13142.1 gi|345006100|ref|YP_004808953.1| - 0.031 14.0 0.0 0.038 13.7 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF3960) Plasmid_stabil PF05016.9 gi|345006101|ref|YP_004808954.1| - 8.4e-05 22.8 0.2 0.0001 22.6 0.1 1.1 1 0 0 1 1 1 1 Plasmid stabilisation system protein DUF1657 PF07870.6 gi|345006101|ref|YP_004808954.1| - 0.021 14.4 1.4 0.043 13.5 0.5 1.7 1 1 1 2 2 2 0 Protein of unknown function (DUF1657) zf-dskA_traR PF01258.12 gi|345006102|ref|YP_004808955.1| - 0.029 14.1 2.0 0.2 11.4 1.4 2.0 1 1 0 1 1 1 0 Prokaryotic dksA/traR C4-type zinc finger PhnA_Zn_Ribbon PF08274.7 gi|345006102|ref|YP_004808955.1| - 0.21 11.4 1.6 0.52 10.1 0.0 2.0 2 0 0 2 2 2 0 PhnA Zinc-Ribbon DNA_pol_E_B PF04042.11 gi|345006103|ref|YP_004808956.1| - 6e-15 55.0 0.0 8.9e-15 54.5 0.0 1.2 1 0 0 1 1 1 1 DNA polymerase alpha/epsilon subunit B Metallophos_2 PF12850.2 gi|345006103|ref|YP_004808956.1| - 1.2e-13 51.1 0.1 2.2e-13 50.3 0.1 1.4 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|345006103|ref|YP_004808956.1| - 1.3e-07 31.2 0.3 2.9e-07 30.0 0.2 1.5 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase tRNA_anti-codon PF01336.20 gi|345006103|ref|YP_004808956.1| - 0.13 12.1 0.0 0.25 11.2 0.0 1.5 1 0 0 1 1 1 0 OB-fold nucleic acid binding domain DUF1616 PF07760.6 gi|345006104|ref|YP_004808957.1| - 0.0067 15.5 0.3 0.0069 15.5 0.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1616) DUF2207 PF09972.4 gi|345006104|ref|YP_004808957.1| - 0.091 11.3 0.1 0.1 11.1 0.1 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) RseC_MucC PF04246.7 gi|345006104|ref|YP_004808957.1| - 0.17 11.4 0.5 0.27 10.7 0.3 1.3 1 0 0 1 1 1 0 Positive regulator of sigma(E), RseC/MucC UPRTase PF14681.1 gi|345006106|ref|YP_004808959.1| - 1.7e-56 190.7 0.0 2e-56 190.4 0.0 1.0 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase Pribosyltran PF00156.22 gi|345006106|ref|YP_004808959.1| - 4.7e-06 26.3 0.1 8.6e-06 25.4 0.1 1.4 1 0 0 1 1 1 1 Phosphoribosyl transferase domain 2-ph_phosp PF04029.9 gi|345006106|ref|YP_004808959.1| - 0.1 11.5 0.1 3.2 6.6 0.0 2.2 2 0 0 2 2 2 0 2-phosphosulpholactate phosphatase His_biosynth PF00977.16 gi|345006107|ref|YP_004808960.1| - 3.2e-72 242.5 6.0 3.6e-72 242.3 4.2 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein Dus PF01207.12 gi|345006107|ref|YP_004808960.1| - 2.2e-10 39.9 0.4 0.00021 20.2 0.0 2.2 2 0 0 2 2 2 2 Dihydrouridine synthase (Dus) NMO PF03060.10 gi|345006107|ref|YP_004808960.1| - 1e-07 31.4 0.8 1e-07 31.4 0.5 2.1 2 0 0 2 2 2 1 Nitronate monooxygenase ThiG PF05690.9 gi|345006107|ref|YP_004808960.1| - 1.3e-07 30.9 4.6 0.0018 17.3 0.4 2.1 2 0 0 2 2 2 2 Thiazole biosynthesis protein ThiG DHO_dh PF01180.16 gi|345006107|ref|YP_004808960.1| - 3.9e-07 29.3 2.3 0.0001 21.4 0.1 2.1 2 0 0 2 2 2 2 Dihydroorotate dehydrogenase PcrB PF01884.12 gi|345006107|ref|YP_004808960.1| - 1.2e-06 27.9 9.4 0.0009 18.5 0.7 3.0 2 1 1 3 3 3 2 PcrB family IGPS PF00218.16 gi|345006107|ref|YP_004808960.1| - 2.5e-06 26.7 1.0 0.0074 15.3 0.0 2.5 3 0 0 3 3 3 2 Indole-3-glycerol phosphate synthase PEP_mutase PF13714.1 gi|345006107|ref|YP_004808960.1| - 3.2e-06 26.5 0.7 0.014 14.5 0.1 2.1 2 0 0 2 2 2 2 Phosphoenolpyruvate phosphomutase TMP-TENI PF02581.12 gi|345006107|ref|YP_004808960.1| - 9e-05 21.6 3.1 0.00029 20.0 0.1 2.1 2 0 0 2 2 2 1 Thiamine monophosphate synthase/TENI Trp_syntA PF00290.15 gi|345006107|ref|YP_004808960.1| - 0.0018 16.8 2.7 0.6 8.6 0.2 2.1 2 0 0 2 2 2 2 Tryptophan synthase alpha chain FMN_dh PF01070.13 gi|345006107|ref|YP_004808960.1| - 0.0022 16.8 12.8 0.0098 14.7 2.7 2.1 2 0 0 2 2 2 2 FMN-dependent dehydrogenase NanE PF04131.9 gi|345006107|ref|YP_004808960.1| - 0.0027 16.6 1.7 0.67 8.8 0.1 2.2 2 0 0 2 2 2 2 Putative N-acetylmannosamine-6-phosphate epimerase G3P_antiterm PF04309.7 gi|345006107|ref|YP_004808960.1| - 0.012 14.6 0.4 0.028 13.4 0.2 1.7 2 0 0 2 2 2 0 Glycerol-3-phosphate responsive antiterminator Ribul_P_3_epim PF00834.14 gi|345006107|ref|YP_004808960.1| - 0.033 13.2 5.5 0.66 9.0 0.3 2.4 2 0 0 2 2 2 0 Ribulose-phosphate 3 epimerase family B12-binding PF02310.14 gi|345006107|ref|YP_004808960.1| - 0.042 13.7 10.7 0.18 11.6 0.9 3.2 1 1 2 3 3 3 0 B12 binding domain IMPDH PF00478.20 gi|345006107|ref|YP_004808960.1| - 0.045 12.6 9.1 0.1 11.4 5.1 1.9 1 1 0 1 1 1 0 IMP dehydrogenase / GMP reductase domain ADH_zinc_N PF00107.21 gi|345006107|ref|YP_004808960.1| - 0.26 10.8 3.7 6.3 6.3 0.1 2.3 1 1 0 2 2 2 0 Zinc-binding dehydrogenase tRNA-synt_1 PF00133.17 gi|345006108|ref|YP_004808961.1| - 2.5e-126 422.1 0.1 2.1e-125 419.0 0.0 2.1 2 1 0 2 2 2 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.8 gi|345006108|ref|YP_004808961.1| - 4e-29 101.3 0.3 2.2e-28 98.9 0.2 2.2 1 1 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.6 gi|345006108|ref|YP_004808961.1| - 1e-23 83.6 0.2 3.6e-14 52.2 0.0 3.5 3 1 0 3 3 3 3 tRNA synthetases class I (M) tRNA-synt_1_2 PF13603.1 gi|345006108|ref|YP_004808961.1| - 0.00023 20.5 0.0 0.00082 18.7 0.0 1.9 1 1 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1e PF01406.14 gi|345006108|ref|YP_004808961.1| - 0.00035 19.7 0.0 0.87 8.6 0.0 2.4 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1d PF00750.14 gi|345006108|ref|YP_004808961.1| - 0.015 14.1 0.0 1.2 7.9 0.0 2.4 2 0 0 2 2 2 0 tRNA synthetases class I (R) tRNA-synt_1f PF01921.13 gi|345006108|ref|YP_004808961.1| - 0.024 13.3 0.1 1 7.9 0.0 2.6 2 1 0 2 2 2 0 tRNA synthetases class I (K) MFS_1 PF07690.11 gi|345006110|ref|YP_004808963.1| - 1.2e-32 113.0 58.9 1.5e-20 73.2 17.5 2.2 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|345006110|ref|YP_004808963.1| - 0.00053 18.6 3.5 0.00053 18.6 2.4 3.1 2 2 1 3 3 3 1 Sugar (and other) transporter Amidohydro_1 PF01979.15 gi|345006111|ref|YP_004808964.1| - 3.6e-49 168.2 5.3 4.6e-49 167.8 3.7 1.1 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.6 gi|345006111|ref|YP_004808964.1| - 2.4e-11 43.4 12.8 2.1e-10 40.4 4.2 2.3 1 1 0 2 2 2 2 Amidohydrolase family Amidohydro_5 PF13594.1 gi|345006111|ref|YP_004808964.1| - 8.2e-10 38.3 0.1 3.5e-09 36.3 0.1 2.1 1 0 0 1 1 1 1 Amidohydrolase TatD_DNase PF01026.16 gi|345006111|ref|YP_004808964.1| - 0.0047 16.1 0.0 0.0079 15.4 0.0 1.3 1 0 0 1 1 1 1 TatD related DNase DUF3359 PF11839.3 gi|345006111|ref|YP_004808964.1| - 0.039 14.2 0.0 0.039 14.2 0.0 2.9 3 1 0 3 3 3 0 Protein of unknown function (DUF3359) A_deaminase PF00962.17 gi|345006111|ref|YP_004808964.1| - 0.051 12.4 0.0 0.1 11.5 0.0 1.4 1 0 0 1 1 1 0 Adenosine/AMP deaminase EcsB PF05975.7 gi|345006112|ref|YP_004808965.1| - 7 5.0 7.9 0.6 8.5 2.0 1.6 1 1 0 1 1 1 0 Bacterial ABC transporter protein EcsB TBP PF00352.16 gi|345006113|ref|YP_004808966.1| - 4.3e-62 205.4 0.0 4e-30 103.0 0.0 2.0 2 0 0 2 2 2 2 Transcription factor TFIID (or TATA-binding protein, TBP) DUF3378 PF11858.3 gi|345006113|ref|YP_004808966.1| - 0.0032 17.4 0.0 2.4 8.2 0.0 2.2 2 0 0 2 2 2 2 Domain of unknown function (DUF3378) CENP-F_C_Rb_bdg PF10490.4 gi|345006113|ref|YP_004808966.1| - 0.039 13.2 0.7 8.8 5.7 0.0 2.4 2 0 0 2 2 2 0 Rb-binding domain of kinetochore protein Cenp-F/LEK1 DUF3548 PF12068.3 gi|345006115|ref|YP_004808968.1| - 0.087 12.1 0.0 0.11 11.8 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF3548) Glycoprotein PF03409.10 gi|345006115|ref|YP_004808968.1| - 0.097 11.3 0.0 0.11 11.1 0.0 1.0 1 0 0 1 1 1 0 Transmembrane glycoprotein UPF0020 PF01170.13 gi|345006116|ref|YP_004808969.1| - 6.7e-28 97.4 0.0 9.8e-28 96.9 0.0 1.2 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_26 PF13659.1 gi|345006116|ref|YP_004808969.1| - 1.2e-09 38.2 0.4 1.2e-09 38.2 0.3 2.0 2 0 0 2 2 2 1 Methyltransferase domain THUMP PF02926.12 gi|345006116|ref|YP_004808969.1| - 0.00097 19.0 0.0 0.0017 18.2 0.0 1.3 1 0 0 1 1 1 1 THUMP domain Methyltransf_11 PF08241.7 gi|345006116|ref|YP_004808969.1| - 0.031 14.7 0.0 0.07 13.6 0.0 1.7 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_31 PF13847.1 gi|345006116|ref|YP_004808969.1| - 0.035 13.7 0.0 0.05 13.1 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain TetR_C_6 PF13977.1 gi|345006116|ref|YP_004808969.1| - 1 9.4 12.1 0.64 10.0 2.9 2.8 2 0 0 2 2 2 0 Bacterial transcriptional repressor DUF1508 PF07411.7 gi|345006117|ref|YP_004808970.1| - 2.6e-19 68.4 0.1 4.3e-19 67.6 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF1508) NO_synthase PF02898.10 gi|345006117|ref|YP_004808970.1| - 0.14 10.7 0.0 0.2 10.3 0.0 1.1 1 0 0 1 1 1 0 Nitric oxide synthase, oxygenase domain PS_Dcarbxylase PF02666.10 gi|345006118|ref|YP_004808971.1| - 5.1e-25 87.9 0.1 1.2e-22 80.1 0.0 2.0 1 1 0 1 1 1 1 Phosphatidylserine decarboxylase Peptidase_M23 PF01551.17 gi|345006118|ref|YP_004808971.1| - 0.008 16.2 1.2 9.3 6.3 0.0 3.2 2 1 0 3 3 3 1 Peptidase family M23 Biotin_lipoyl PF00364.17 gi|345006118|ref|YP_004808971.1| - 0.018 14.6 0.6 8.2 6.1 0.0 3.7 4 0 0 4 4 4 0 Biotin-requiring enzyme RnfC_N PF13375.1 gi|345006118|ref|YP_004808971.1| - 0.13 12.0 0.7 6.6 6.5 0.0 3.0 2 1 1 3 3 3 0 RnfC Barrel sandwich hybrid domain Biotin_lipoyl_2 PF13533.1 gi|345006118|ref|YP_004808971.1| - 0.15 11.7 0.7 1.7 8.3 0.2 2.6 3 0 0 3 3 3 0 Biotin-lipoyl like AAA PF00004.24 gi|345006119|ref|YP_004808972.1| - 6.5e-12 45.7 0.0 1.7e-11 44.4 0.0 1.7 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) DNA_pol3_delta2 PF13177.1 gi|345006119|ref|YP_004808972.1| - 8.4e-10 38.5 0.0 1.2e-09 38.0 0.0 1.2 1 0 0 1 1 1 1 DNA polymerase III, delta subunit Rep_fac_C PF08542.6 gi|345006119|ref|YP_004808972.1| - 9.9e-10 38.2 0.0 2.2e-09 37.1 0.0 1.6 1 0 0 1 1 1 1 Replication factor C C-terminal domain AAA_22 PF13401.1 gi|345006119|ref|YP_004808972.1| - 3.7e-07 30.3 0.0 1.4e-06 28.5 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|345006119|ref|YP_004808972.1| - 3.8e-07 30.2 0.9 2.2e-05 24.5 0.0 3.1 1 1 1 2 2 2 1 AAA ATPase domain AAA_19 PF13245.1 gi|345006119|ref|YP_004808972.1| - 2.8e-06 26.9 0.0 1.1e-05 25.0 0.0 2.0 2 0 0 2 2 2 1 Part of AAA domain AAA_14 PF13173.1 gi|345006119|ref|YP_004808972.1| - 1.3e-05 25.0 0.0 3.8e-05 23.5 0.0 1.8 2 0 0 2 2 1 1 AAA domain Sigma54_activat PF00158.21 gi|345006119|ref|YP_004808972.1| - 5.4e-05 22.7 0.1 0.0023 17.4 0.0 2.6 3 0 0 3 3 3 1 Sigma-54 interaction domain AAA_24 PF13479.1 gi|345006119|ref|YP_004808972.1| - 8e-05 22.3 0.0 0.00012 21.7 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|345006119|ref|YP_004808972.1| - 0.00025 21.8 0.1 0.00063 20.5 0.1 2.1 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.1 gi|345006119|ref|YP_004808972.1| - 0.00099 18.7 0.1 0.0025 17.4 0.1 1.8 1 1 0 1 1 1 1 AAA domain Zeta_toxin PF06414.7 gi|345006119|ref|YP_004808972.1| - 0.001 18.2 0.2 0.0026 16.8 0.2 1.7 1 1 0 1 1 1 1 Zeta toxin NACHT PF05729.7 gi|345006119|ref|YP_004808972.1| - 0.0014 18.2 0.0 0.0041 16.8 0.0 1.7 1 1 0 1 1 1 1 NACHT domain FtsK_SpoIIIE PF01580.13 gi|345006119|ref|YP_004808972.1| - 0.0023 17.4 0.0 0.0054 16.2 0.0 1.6 1 0 0 1 1 1 1 FtsK/SpoIIIE family Sigma54_activ_2 PF14532.1 gi|345006119|ref|YP_004808972.1| - 0.0023 17.9 0.0 0.04 13.9 0.0 2.2 2 0 0 2 2 2 1 Sigma-54 interaction domain Rad17 PF03215.10 gi|345006119|ref|YP_004808972.1| - 0.0026 16.5 0.0 0.041 12.5 0.0 2.0 2 0 0 2 2 2 1 Rad17 cell cycle checkpoint protein T2SE PF00437.15 gi|345006119|ref|YP_004808972.1| - 0.0041 16.0 0.0 0.0099 14.8 0.0 1.6 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_18 PF13238.1 gi|345006119|ref|YP_004808972.1| - 0.0066 16.7 0.0 0.016 15.5 0.0 1.7 1 1 0 1 1 1 1 AAA domain IstB_IS21 PF01695.12 gi|345006119|ref|YP_004808972.1| - 0.0078 15.6 0.0 0.017 14.5 0.0 1.5 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_11 PF13086.1 gi|345006119|ref|YP_004808972.1| - 0.011 15.3 0.0 0.019 14.5 0.0 1.5 1 1 0 1 1 1 0 AAA domain AAA_33 PF13671.1 gi|345006119|ref|YP_004808972.1| - 0.018 14.8 0.1 0.038 13.8 0.1 1.6 1 1 0 1 1 1 0 AAA domain Mg_chelatase PF01078.16 gi|345006119|ref|YP_004808972.1| - 0.019 14.1 0.0 0.038 13.1 0.0 1.5 1 1 0 1 1 1 0 Magnesium chelatase, subunit ChlI Viral_helicase1 PF01443.13 gi|345006119|ref|YP_004808972.1| - 0.021 14.3 0.0 0.036 13.5 0.0 1.3 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase AAA_5 PF07728.9 gi|345006119|ref|YP_004808972.1| - 0.025 14.2 1.1 0.24 11.1 0.2 2.5 2 1 0 2 2 1 0 AAA domain (dynein-related subfamily) NTPase_1 PF03266.10 gi|345006119|ref|YP_004808972.1| - 0.031 14.0 0.0 7.8 6.1 0.0 2.3 2 0 0 2 2 2 0 NTPase DUF2075 PF09848.4 gi|345006119|ref|YP_004808972.1| - 0.032 13.2 0.0 0.044 12.7 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) AAA_28 PF13521.1 gi|345006119|ref|YP_004808972.1| - 0.037 13.9 0.1 0.11 12.4 0.1 2.1 1 1 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|345006119|ref|YP_004808972.1| - 0.038 13.4 0.2 0.38 10.1 0.1 2.3 1 1 0 1 1 1 0 AAA-like domain AAA_32 PF13654.1 gi|345006119|ref|YP_004808972.1| - 0.042 12.5 0.0 0.069 11.8 0.0 1.3 1 0 0 1 1 1 0 AAA domain cobW PF02492.14 gi|345006119|ref|YP_004808972.1| - 0.053 12.9 0.0 0.25 10.7 0.0 2.0 2 1 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain ABC_tran PF00005.22 gi|345006119|ref|YP_004808972.1| - 0.065 13.5 0.0 0.11 12.7 0.0 1.7 1 1 0 1 1 1 0 ABC transporter DNA_pol3_gamma3 PF12169.3 gi|345006119|ref|YP_004808972.1| - 0.07 12.8 0.5 0.23 11.2 0.1 2.0 2 0 0 2 2 2 0 DNA polymerase III subunits gamma and tau domain III DNA_pol3_delta PF06144.8 gi|345006119|ref|YP_004808972.1| - 0.083 12.4 0.0 0.13 11.7 0.0 1.3 1 0 0 1 1 1 0 DNA polymerase III, delta subunit PAS_4 PF08448.5 gi|345006119|ref|YP_004808972.1| - 0.59 10.1 6.9 2.2 8.3 0.1 3.7 2 2 2 5 5 5 0 PAS fold TetR_C_6 PF13977.1 gi|345006119|ref|YP_004808972.1| - 0.84 9.6 9.6 0.23 11.5 0.2 3.4 3 2 0 3 3 3 0 Bacterial transcriptional repressor DUF4382 PF14321.1 gi|345006120|ref|YP_004808973.1| - 9.9e-48 161.7 18.6 3.8e-25 88.5 0.8 3.2 3 0 0 3 3 3 2 Domain of unknown function (DUF4382) S1_2 PF13509.1 gi|345006120|ref|YP_004808973.1| - 0.038 13.9 0.2 2.9 7.8 0.0 2.7 2 0 0 2 2 2 0 S1 domain MG1 PF11974.3 gi|345006120|ref|YP_004808973.1| - 1.8 9.1 6.9 2.4 8.7 1.0 2.9 2 0 0 2 2 2 0 Alpha-2-macroglobulin MG1 domain Lactamase_B_2 PF12706.2 gi|345006121|ref|YP_004808974.1| - 2.3e-30 105.5 0.1 3.3e-30 105.1 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|345006121|ref|YP_004808974.1| - 1.9e-14 53.7 2.7 4.4e-13 49.3 1.9 2.2 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_4 PF13691.1 gi|345006121|ref|YP_004808974.1| - 0.00051 19.4 0.0 0.00096 18.5 0.0 1.4 1 0 0 1 1 1 1 tRNase Z endonuclease DUF460 PF04312.8 gi|345006122|ref|YP_004808975.1| - 2.9e-44 149.9 0.0 5.8e-44 148.9 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF460) IncA PF04156.9 gi|345006122|ref|YP_004808975.1| - 0.01 15.4 19.6 0.02 14.4 13.6 1.6 1 0 0 1 1 1 0 IncA protein SPX PF03105.14 gi|345006122|ref|YP_004808975.1| - 0.011 15.5 1.0 0.014 15.2 0.7 1.4 1 0 0 1 1 1 0 SPX domain GAS PF13851.1 gi|345006122|ref|YP_004808975.1| - 0.05 12.7 22.2 0.11 11.6 15.4 1.6 1 0 0 1 1 1 0 Growth-arrest specific micro-tubule binding Spc7 PF08317.6 gi|345006122|ref|YP_004808975.1| - 0.054 12.1 14.2 0.085 11.5 9.9 1.2 1 0 0 1 1 1 0 Spc7 kinetochore protein V_ATPase_I PF01496.14 gi|345006122|ref|YP_004808975.1| - 0.062 11.1 11.7 0.099 10.4 8.1 1.2 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family LMBR1 PF04791.11 gi|345006122|ref|YP_004808975.1| - 0.091 11.3 3.1 0.12 10.8 2.1 1.1 1 0 0 1 1 1 0 LMBR1-like membrane protein AAA_13 PF13166.1 gi|345006122|ref|YP_004808975.1| - 0.13 10.6 9.5 0.19 10.1 6.6 1.1 1 0 0 1 1 1 0 AAA domain APG6 PF04111.7 gi|345006122|ref|YP_004808975.1| - 0.48 9.4 21.0 0.96 8.4 14.6 1.4 1 0 0 1 1 1 0 Autophagy protein Apg6 Atg14 PF10186.4 gi|345006122|ref|YP_004808975.1| - 1 8.2 15.3 2.5 6.9 10.6 1.6 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 CENP-Q PF13094.1 gi|345006122|ref|YP_004808975.1| - 4.6 7.2 25.8 1.7e+02 2.1 17.9 2.7 1 1 0 1 1 1 0 CENP-Q, a CENPA-CAD centromere complex subunit Tho2 PF11262.3 gi|345006122|ref|YP_004808975.1| - 9 5.2 17.1 0.41 9.6 3.4 2.2 1 1 1 2 2 2 0 Transcription factor/nuclear export subunit protein 2 OrfB_IS605 PF01385.14 gi|345006124|ref|YP_004808977.1| - 1.7e-54 184.6 0.0 2.2e-54 184.2 0.0 1.1 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|345006124|ref|YP_004808977.1| - 2.4e-16 59.1 0.2 4.6e-16 58.2 0.1 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain HTH_OrfB_IS605 PF12323.3 gi|345006124|ref|YP_004808977.1| - 0.084 12.2 0.0 0.18 11.1 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain DUF2892 PF11127.3 gi|345006127|ref|YP_004808980.1| - 0.065 13.0 0.5 0.065 13.0 0.3 3.1 3 1 0 3 3 3 0 Protein of unknown function (DUF2892) tRNA-synt_2b PF00587.20 gi|345006128|ref|YP_004808981.1| - 1.3e-56 190.8 0.0 2e-56 190.3 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.15 gi|345006128|ref|YP_004808981.1| - 7.9e-19 67.4 0.0 1.4e-18 66.5 0.0 1.4 1 0 0 1 1 1 1 Anticodon binding domain Nif11 PF07862.6 gi|345006128|ref|YP_004808981.1| - 0.0019 18.0 0.9 1.6 8.7 0.1 3.1 2 0 0 2 2 2 2 Nitrogen fixation protein of unknown function zf-ribbon_3 PF13248.1 gi|345006128|ref|YP_004808981.1| - 0.55 9.5 2.0 9.5 5.5 0.1 2.6 3 0 0 3 3 3 0 zinc-ribbon domain CBS PF00571.23 gi|345006129|ref|YP_004808982.1| - 1.1e-35 121.1 7.5 1.4e-14 53.6 0.2 4.1 4 0 0 4 4 4 4 CBS domain Peptidase_S8 PF00082.17 gi|345006130|ref|YP_004808983.1| - 8.3e-24 84.2 0.0 8.4e-18 64.4 0.3 2.9 3 1 0 3 3 3 2 Subtilase family DUF4178 PF13785.1 gi|345006131|ref|YP_004808984.1| - 0.046 13.7 0.0 0.047 13.6 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4178) DUF296 PF03479.10 gi|345006132|ref|YP_004808985.1| - 9.2e-25 86.5 0.0 1e-24 86.4 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF296) XS PF03468.9 gi|345006132|ref|YP_004808985.1| - 0.026 14.4 0.0 0.034 14.0 0.0 1.1 1 0 0 1 1 1 0 XS domain CAP59_mtransfer PF11735.3 gi|345006132|ref|YP_004808985.1| - 0.042 13.0 0.0 0.047 12.8 0.0 1.2 1 0 0 1 1 1 0 Cryptococcal mannosyltransferase 1 PolC_DP2 PF03833.8 gi|345006133|ref|YP_004808986.1| - 0 1286.0 1.4 1.9e-240 800.2 0.4 2.2 2 0 0 2 2 2 2 DNA polymerase II large subunit DP2 Nop10p PF04135.7 gi|345006133|ref|YP_004808986.1| - 0.11 12.2 1.0 0.45 10.2 0.7 2.0 1 0 0 1 1 1 0 Nucleolar RNA-binding protein, Nop10p family DZR PF12773.2 gi|345006133|ref|YP_004808986.1| - 6.5 6.6 18.1 16 5.4 7.6 3.1 2 1 0 2 2 2 0 Double zinc ribbon HypA PF01155.14 gi|345006134|ref|YP_004808987.1| - 0.00025 20.6 0.1 0.00036 20.1 0.1 1.3 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family PRC PF05239.11 gi|345006134|ref|YP_004808987.1| - 0.0044 16.8 1.4 0.0077 16.0 0.2 1.9 2 0 0 2 2 2 1 PRC-barrel domain Rubredoxin PF00301.15 gi|345006134|ref|YP_004808987.1| - 0.036 13.9 5.1 0.32 10.8 0.5 2.5 1 1 1 2 2 2 0 Rubredoxin zf-ribbon_3 PF13248.1 gi|345006134|ref|YP_004808987.1| - 0.037 13.2 0.9 0.9 8.8 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain BPL_C PF02237.12 gi|345006134|ref|YP_004808987.1| - 0.037 13.7 1.5 0.04 13.6 0.4 1.6 2 0 0 2 2 2 0 Biotin protein ligase C terminal domain Zn_Tnp_IS1595 PF12760.2 gi|345006134|ref|YP_004808987.1| - 0.17 11.7 1.5 10 6.0 0.0 2.2 2 0 0 2 2 2 0 Transposase zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|345006134|ref|YP_004808987.1| - 0.17 11.8 4.5 0.52 10.3 3.1 1.8 1 1 0 1 1 1 0 Zinc ribbon domain zf-B_box PF00643.19 gi|345006134|ref|YP_004808987.1| - 0.66 9.9 3.0 4.8 7.1 0.1 2.3 2 1 0 2 2 2 0 B-box zinc finger OrfB_IS605 PF01385.14 gi|345006135|ref|YP_004808988.1| - 2.7e-26 92.3 1.6 2.7e-26 92.3 1.1 1.7 1 1 1 2 2 2 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|345006135|ref|YP_004808988.1| - 9.9e-22 76.3 0.3 2e-21 75.3 0.2 1.6 1 0 0 1 1 1 1 Putative transposase DNA-binding domain HTH_OrfB_IS605 PF12323.3 gi|345006135|ref|YP_004808988.1| - 1.5e-05 24.2 0.1 3.6e-05 23.0 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain DZR PF12773.2 gi|345006135|ref|YP_004808988.1| - 0.23 11.2 2.9 0.42 10.4 2.0 1.4 1 0 0 1 1 1 0 Double zinc ribbon Zn_Tnp_IS91 PF14319.1 gi|345006135|ref|YP_004808988.1| - 0.47 9.9 3.0 0.25 10.8 0.4 1.8 2 0 0 2 2 2 0 Transposase zinc-binding domain zf-ribbon_3 PF13248.1 gi|345006135|ref|YP_004808988.1| - 1.2 8.4 4.2 4.9 6.4 0.7 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Sulfatase PF00884.18 gi|345006136|ref|YP_004808989.1| - 7.1e-46 156.8 0.2 1e-45 156.3 0.1 1.2 1 0 0 1 1 1 1 Sulfatase Phosphodiest PF01663.17 gi|345006136|ref|YP_004808989.1| - 4.8e-12 45.8 0.3 7.6e-06 25.4 0.1 2.4 2 0 0 2 2 2 2 Type I phosphodiesterase / nucleotide pyrophosphatase DUF1501 PF07394.7 gi|345006136|ref|YP_004808989.1| - 0.21 10.3 2.3 0.94 8.2 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF1501) NOB1_Zn_bind PF08772.6 gi|345006137|ref|YP_004808990.1| - 0.00074 19.2 1.4 0.0035 17.1 0.0 2.0 1 1 1 2 2 2 1 Nin one binding (NOB1) Zn-ribbon like Zn-ribbon_8 PF09723.5 gi|345006137|ref|YP_004808990.1| - 0.054 13.4 1.4 1.9 8.5 0.1 2.2 2 0 0 2 2 2 0 Zinc ribbon domain DAN PF03045.10 gi|345006137|ref|YP_004808990.1| - 0.088 12.2 1.0 0.11 11.9 0.7 1.2 1 0 0 1 1 1 0 DAN domain A2L_zn_ribbon PF08792.5 gi|345006137|ref|YP_004808990.1| - 0.14 11.6 1.5 10 5.7 0.1 2.2 2 0 0 2 2 2 0 A2L zinc ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|345006137|ref|YP_004808990.1| - 0.15 11.8 1.1 3.4 7.5 0.1 2.2 1 1 0 2 2 2 0 Transposase zinc-ribbon domain zf-IS66 PF13005.2 gi|345006137|ref|YP_004808990.1| - 0.15 12.0 4.8 0.46 10.4 3.4 1.8 1 1 0 1 1 1 0 zinc-finger binding domain of transposase IS66 E7 PF00527.13 gi|345006137|ref|YP_004808990.1| - 0.62 10.2 2.9 0.84 9.8 2.0 1.3 1 1 0 1 1 1 0 E7 protein, Early protein Peptidase_M24 PF00557.19 gi|345006138|ref|YP_004808991.1| - 8e-41 139.8 1.0 9e-41 139.7 0.7 1.1 1 0 0 1 1 1 1 Metallopeptidase family M24 Usp PF00582.21 gi|345006139|ref|YP_004808992.1| - 1.1e-29 103.4 2.2 1.2e-29 103.2 1.5 1.0 1 0 0 1 1 1 1 Universal stress protein family VWA_2 PF13519.1 gi|345006139|ref|YP_004808992.1| - 0.037 14.1 0.1 0.05 13.7 0.1 1.2 1 0 0 1 1 1 0 von Willebrand factor type A domain DDE_Tnp_IS240 PF13610.1 gi|345006140|ref|YP_004808993.1| - 5e-17 62.1 0.4 6.8e-17 61.7 0.3 1.2 1 0 0 1 1 1 1 DDE domain DDE_Tnp_IS66 PF03050.9 gi|345006140|ref|YP_004808993.1| - 1.2e-05 24.7 0.2 3.3e-05 23.2 0.0 1.7 1 1 0 1 1 1 1 Transposase IS66 family rve PF00665.21 gi|345006140|ref|YP_004808993.1| - 0.0081 16.2 0.4 0.023 14.8 0.2 1.8 1 1 1 2 2 2 1 Integrase core domain DDE_3 PF13358.1 gi|345006140|ref|YP_004808993.1| - 0.028 14.1 0.0 0.1 12.3 0.0 1.9 1 1 0 1 1 1 0 DDE superfamily endonuclease DDE_Tnp_1 PF01609.16 gi|345006140|ref|YP_004808993.1| - 1.3 8.5 3.9 4 6.9 0.5 2.1 1 1 1 2 2 2 0 Transposase DDE domain AdoHcyase PF05221.12 gi|345006142|ref|YP_004808995.1| - 8e-50 169.2 0.1 9.9e-50 168.9 0.0 1.0 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase AdoHcyase_NAD PF00670.16 gi|345006142|ref|YP_004808995.1| - 6.3e-47 159.4 0.9 9.5e-47 158.8 0.2 1.6 2 0 0 2 2 2 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 2-Hacid_dh_C PF02826.14 gi|345006142|ref|YP_004808995.1| - 6.2e-09 35.2 0.1 1.1e-08 34.4 0.1 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IlvN PF07991.7 gi|345006142|ref|YP_004808995.1| - 2.6e-05 23.6 0.3 0.00013 21.3 0.0 2.1 2 0 0 2 2 2 1 Acetohydroxy acid isomeroreductase, catalytic domain TrkA_N PF02254.13 gi|345006142|ref|YP_004808995.1| - 0.0074 16.2 0.1 0.021 14.7 0.0 1.8 1 0 0 1 1 1 1 TrkA-N domain Shikimate_DH PF01488.15 gi|345006142|ref|YP_004808995.1| - 0.019 15.0 0.0 0.04 14.0 0.0 1.5 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase AlaDh_PNT_C PF01262.16 gi|345006142|ref|YP_004808995.1| - 0.033 13.7 0.5 0.37 10.3 0.4 2.2 1 1 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain 3HCDH_N PF02737.13 gi|345006142|ref|YP_004808995.1| - 0.079 12.6 0.5 0.15 11.6 0.3 1.5 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Hjc PF01870.13 gi|345006144|ref|YP_004808997.1| - 2.9e-28 97.3 0.0 4e-28 96.8 0.0 1.2 1 0 0 1 1 1 1 Archaeal holliday junction resolvase (hjc) Polysacc_synt PF01943.12 gi|345006145|ref|YP_004808998.1| - 0.0016 17.7 1.0 0.0018 17.5 0.7 1.0 1 0 0 1 1 1 1 Polysaccharide biosynthesis protein ABC2_membrane_4 PF12730.2 gi|345006145|ref|YP_004808998.1| - 0.043 12.9 1.6 0.046 12.8 1.1 1.0 1 0 0 1 1 1 0 ABC-2 family transporter protein DUF1304 PF06993.7 gi|345006145|ref|YP_004808998.1| - 3.1 7.5 5.9 4 7.1 4.1 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF1304) DUF4282 PF14110.1 gi|345006145|ref|YP_004808998.1| - 5.2 7.3 6.2 6.7 6.9 4.3 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4282) DUF2273 PF10031.4 gi|345006145|ref|YP_004808998.1| - 7.9 6.1 16.7 3.6 7.2 3.2 2.7 2 1 1 3 3 3 0 Small integral membrane protein (DUF2273) DNA_primase_lrg PF04104.9 gi|345006146|ref|YP_004808999.1| - 3.6e-10 39.5 0.0 4.4e-10 39.2 0.0 1.1 1 0 0 1 1 1 1 Eukaryotic and archaeal DNA primase, large subunit ABC_transp_aux PF09822.4 gi|345006146|ref|YP_004808999.1| - 0.068 12.6 0.0 0.086 12.2 0.0 1.2 1 0 0 1 1 1 0 ABC-type uncharacterized transport system Rep_fac_C PF08542.6 gi|345006147|ref|YP_004809000.1| - 1.5e-21 76.1 0.0 3e-21 75.1 0.0 1.5 1 0 0 1 1 1 1 Replication factor C C-terminal domain DNA_pol3_delta2 PF13177.1 gi|345006147|ref|YP_004809000.1| - 1.2e-18 67.3 0.0 3.5e-16 59.2 0.0 2.1 1 1 0 1 1 1 1 DNA polymerase III, delta subunit AAA PF00004.24 gi|345006147|ref|YP_004809000.1| - 7.2e-18 65.0 0.0 7.3e-17 61.8 0.0 2.1 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.1 gi|345006147|ref|YP_004809000.1| - 1.2e-08 35.1 2.7 1.3e-06 28.5 0.0 2.9 2 2 1 3 3 3 1 AAA ATPase domain Rad17 PF03215.10 gi|345006147|ref|YP_004809000.1| - 2.9e-08 32.8 0.0 0.00014 20.7 0.0 2.2 2 0 0 2 2 2 2 Rad17 cell cycle checkpoint protein RuvB_N PF05496.7 gi|345006147|ref|YP_004809000.1| - 6e-08 32.0 0.0 4.6e-07 29.1 0.0 2.2 1 1 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus AAA_22 PF13401.1 gi|345006147|ref|YP_004809000.1| - 1.5e-06 28.3 0.1 0.074 13.2 0.0 2.8 2 1 1 3 3 3 2 AAA domain AAA_14 PF13173.1 gi|345006147|ref|YP_004809000.1| - 4.9e-06 26.4 0.0 8.4e-06 25.7 0.0 1.3 1 0 0 1 1 1 1 AAA domain Mg_chelatase PF01078.16 gi|345006147|ref|YP_004809000.1| - 2.3e-05 23.6 0.0 0.0033 16.6 0.0 2.4 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI DNA_pol3_delta PF06144.8 gi|345006147|ref|YP_004809000.1| - 0.0003 20.3 0.0 0.0005 19.6 0.0 1.3 1 0 0 1 1 1 1 DNA polymerase III, delta subunit AAA_3 PF07726.6 gi|345006147|ref|YP_004809000.1| - 0.0018 17.8 0.0 0.017 14.7 0.0 2.1 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) IstB_IS21 PF01695.12 gi|345006147|ref|YP_004809000.1| - 0.0018 17.6 0.0 0.0039 16.6 0.0 1.5 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_25 PF13481.1 gi|345006147|ref|YP_004809000.1| - 0.0061 15.9 0.0 0.016 14.5 0.0 1.8 2 0 0 2 2 2 1 AAA domain ResIII PF04851.10 gi|345006147|ref|YP_004809000.1| - 0.015 15.1 0.0 0.038 13.8 0.0 1.7 1 1 0 1 1 1 0 Type III restriction enzyme, res subunit Sigma54_activat PF00158.21 gi|345006147|ref|YP_004809000.1| - 0.017 14.5 0.0 0.4 10.1 0.0 2.2 1 1 0 1 1 1 0 Sigma-54 interaction domain AAA_5 PF07728.9 gi|345006147|ref|YP_004809000.1| - 0.024 14.3 0.0 0.13 12.0 0.0 2.2 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) DUF815 PF05673.8 gi|345006147|ref|YP_004809000.1| - 0.042 12.7 0.0 0.062 12.2 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF815) TIP49 PF06068.8 gi|345006147|ref|YP_004809000.1| - 0.06 12.0 0.0 0.56 8.8 0.0 2.2 2 1 0 2 2 2 0 TIP49 C-terminus AAA_17 PF13207.1 gi|345006147|ref|YP_004809000.1| - 0.065 14.0 0.1 0.17 12.6 0.1 2.1 1 1 0 1 1 1 0 AAA domain AAA_24 PF13479.1 gi|345006147|ref|YP_004809000.1| - 0.069 12.7 0.0 0.17 11.4 0.0 1.6 1 1 0 1 1 1 0 AAA domain AAA_19 PF13245.1 gi|345006147|ref|YP_004809000.1| - 0.086 12.5 0.1 1 9.1 0.0 2.5 2 0 0 2 2 2 0 Part of AAA domain Sigma54_activ_2 PF14532.1 gi|345006147|ref|YP_004809000.1| - 0.087 12.8 0.0 0.27 11.2 0.0 1.8 1 1 0 1 1 1 0 Sigma-54 interaction domain Arch_ATPase PF01637.13 gi|345006147|ref|YP_004809000.1| - 0.13 11.8 0.0 0.97 9.0 0.0 1.8 1 1 1 2 2 2 0 Archaeal ATPase DEAD PF00270.24 gi|345006147|ref|YP_004809000.1| - 0.14 11.6 0.0 4.2 6.8 0.0 2.5 3 0 0 3 3 3 0 DEAD/DEAH box helicase SNF2_N PF00176.18 gi|345006147|ref|YP_004809000.1| - 0.15 10.8 0.0 0.27 10.0 0.0 1.3 1 0 0 1 1 1 0 SNF2 family N-terminal domain TPR_4 PF07721.9 gi|345006147|ref|YP_004809000.1| - 0.67 10.5 3.1 13 6.5 0.0 3.3 3 0 0 3 3 2 0 Tetratricopeptide repeat ThiS PF02597.15 gi|345006148|ref|YP_004809001.1| - 7.2e-06 26.3 0.2 8.3e-06 26.1 0.2 1.0 1 0 0 1 1 1 1 ThiS family Glyco_trans_4_4 PF13579.1 gi|345006148|ref|YP_004809001.1| - 0.036 14.2 0.7 0.042 13.9 0.5 1.1 1 0 0 1 1 1 0 Glycosyl transferase 4-like domain AhpC-TSA PF00578.16 gi|345006149|ref|YP_004809002.1| - 3.4e-13 49.3 0.0 5.3e-13 48.7 0.0 1.3 1 0 0 1 1 1 1 AhpC/TSA family Acetyltransf_10 PF13673.1 gi|345006149|ref|YP_004809002.1| - 1.1e-08 35.1 0.1 2.6e-08 33.9 0.1 1.6 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|345006149|ref|YP_004809002.1| - 4.5e-05 23.5 0.0 7.5e-05 22.8 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Redoxin PF08534.5 gi|345006149|ref|YP_004809002.1| - 6.2e-05 22.5 0.0 0.00011 21.7 0.0 1.4 1 0 0 1 1 1 1 Redoxin Acetyltransf_1 PF00583.19 gi|345006149|ref|YP_004809002.1| - 0.00013 21.9 0.1 0.00028 20.8 0.1 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Phage_Coat_B PF05356.6 gi|345006149|ref|YP_004809002.1| - 0.0043 16.7 0.2 0.0082 15.8 0.1 1.4 1 0 0 1 1 1 1 Phage Coat protein B FR47 PF08445.5 gi|345006149|ref|YP_004809002.1| - 0.081 12.6 0.1 0.15 11.8 0.1 1.3 1 0 0 1 1 1 0 FR47-like protein Acetyltransf_7 PF13508.1 gi|345006150|ref|YP_004809003.1| - 1.7e-07 31.3 0.0 2.3e-07 30.8 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|345006150|ref|YP_004809003.1| - 2.4e-07 30.6 0.1 3.9e-07 29.9 0.1 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|345006150|ref|YP_004809003.1| - 9.4e-05 22.5 0.0 0.00012 22.1 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|345006150|ref|YP_004809003.1| - 0.027 14.2 0.0 0.037 13.7 0.0 1.2 1 0 0 1 1 1 0 FR47-like protein Acetyltransf_3 PF13302.1 gi|345006150|ref|YP_004809003.1| - 0.029 14.5 0.0 0.035 14.2 0.0 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain PGM_PMM_I PF02878.11 gi|345006151|ref|YP_004809004.1| - 8.9e-37 125.6 0.0 1.7e-36 124.7 0.0 1.5 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.11 gi|345006151|ref|YP_004809004.1| - 1.9e-25 89.1 0.2 1.1e-24 86.7 0.1 2.2 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_III PF02880.11 gi|345006151|ref|YP_004809004.1| - 1.7e-22 79.5 0.3 3e-22 78.7 0.2 1.3 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_IV PF00408.15 gi|345006151|ref|YP_004809004.1| - 2.3e-14 53.1 0.1 1.3e-13 50.7 0.0 2.3 2 1 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain Exotox-A_target PF09102.5 gi|345006151|ref|YP_004809004.1| - 0.074 12.5 0.0 0.18 11.3 0.0 1.6 1 0 0 1 1 1 0 Exotoxin A, targeting FMN_red PF03358.10 gi|345006152|ref|YP_004809005.1| - 1.4e-29 102.5 0.0 1.8e-29 102.2 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.12 gi|345006152|ref|YP_004809005.1| - 9.6e-08 31.7 0.0 1.4e-07 31.2 0.0 1.3 1 0 0 1 1 1 1 Flavodoxin-like fold NapD PF03927.8 gi|345006152|ref|YP_004809005.1| - 0.15 11.8 0.0 0.26 11.1 0.0 1.3 1 0 0 1 1 1 0 NapD protein GIY-YIG PF01541.19 gi|345006153|ref|YP_004809006.1| - 7.2e-13 48.7 0.0 9.6e-13 48.3 0.0 1.2 1 0 0 1 1 1 1 GIY-YIG catalytic domain T5orf172 PF10544.4 gi|345006153|ref|YP_004809006.1| - 0.0072 16.6 0.1 0.011 16.1 0.1 1.3 1 0 0 1 1 1 1 T5orf172 domain MUG113 PF13455.1 gi|345006153|ref|YP_004809006.1| - 0.0093 16.4 0.2 0.015 15.7 0.1 1.4 1 0 0 1 1 1 1 Meiotically up-regulated gene 113 DZR PF12773.2 gi|345006154|ref|YP_004809007.1| - 0.0032 17.2 0.4 0.0039 16.9 0.3 1.2 1 0 0 1 1 1 1 Double zinc ribbon ATPase-cat_bd PF12156.3 gi|345006154|ref|YP_004809007.1| - 0.065 13.7 0.4 0.069 13.6 0.3 1.1 1 0 0 1 1 1 0 Putative metal-binding domain of cation transport ATPase PhnA_Zn_Ribbon PF08274.7 gi|345006154|ref|YP_004809007.1| - 0.089 12.5 3.3 0.92 9.3 2.3 2.0 1 1 0 1 1 1 0 PhnA Zinc-Ribbon OrfB_Zn_ribbon PF07282.6 gi|345006154|ref|YP_004809007.1| - 0.089 12.4 2.0 0.13 11.9 1.4 1.3 1 1 0 1 1 1 0 Putative transposase DNA-binding domain RNHCP PF12647.2 gi|345006154|ref|YP_004809007.1| - 0.097 12.5 1.6 0.14 12.0 1.1 1.3 1 1 0 1 1 1 0 RNHCP domain zinc_ribbon_2 PF13240.1 gi|345006154|ref|YP_004809007.1| - 0.12 11.9 2.8 0.53 9.8 1.9 1.9 1 1 0 1 1 1 0 zinc-ribbon domain Lar_restr_allev PF14354.1 gi|345006154|ref|YP_004809007.1| - 0.13 12.5 1.6 0.25 11.6 1.1 1.5 1 1 0 1 1 1 0 Restriction alleviation protein Lar zf-ribbon_3 PF13248.1 gi|345006154|ref|YP_004809007.1| - 0.16 11.2 0.9 12 5.3 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|345006154|ref|YP_004809007.1| - 0.16 11.9 3.8 0.94 9.4 2.6 1.9 1 1 0 1 1 1 0 Zinc ribbon domain Nudix_N_2 PF14803.1 gi|345006154|ref|YP_004809007.1| - 0.18 11.5 1.8 0.59 9.8 1.0 1.9 1 1 1 2 2 2 0 Nudix N-terminal zf-C4_Topoisom PF01396.14 gi|345006154|ref|YP_004809007.1| - 0.19 11.2 0.6 8.7 5.9 0.0 2.1 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger Ogr_Delta PF04606.7 gi|345006154|ref|YP_004809007.1| - 0.31 10.7 3.6 9.7 5.9 0.7 2.3 2 1 0 2 2 2 0 Ogr/Delta-like zinc finger Prim_Zn_Ribbon PF08273.7 gi|345006154|ref|YP_004809007.1| - 2.5 8.2 9.5 11 6.1 4.5 2.8 2 1 0 2 2 2 0 Zinc-binding domain of primase-helicase UPF0547 PF10571.4 gi|345006154|ref|YP_004809007.1| - 8.6 6.1 6.4 7.2 6.4 0.4 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 DUF1931 PF09123.6 gi|345006155|ref|YP_004809008.1| - 3.7e-05 23.6 0.9 4e-05 23.5 0.6 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF1931) Histone PF00125.19 gi|345006155|ref|YP_004809008.1| - 8.3e-05 22.6 0.0 0.00012 22.1 0.0 1.4 1 1 0 1 1 1 1 Core histone H2A/H2B/H3/H4 CBFD_NFYB_HMF PF00808.18 gi|345006155|ref|YP_004809008.1| - 0.0002 21.3 0.1 0.00026 20.9 0.1 1.3 1 1 0 1 1 1 1 Histone-like transcription factor (CBF/NF-Y) and archaeal histone SBP_bac_7 PF03480.8 gi|345006155|ref|YP_004809008.1| - 0.03 13.4 0.1 0.036 13.1 0.1 1.1 1 0 0 1 1 1 0 Bacterial extracellular solute-binding protein, family 7 DUF1932 PF09130.6 gi|345006155|ref|YP_004809008.1| - 0.032 13.9 0.0 0.039 13.6 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF1932) Rib_5-P_isom_A PF06026.9 gi|345006156|ref|YP_004809009.1| - 1.4e-55 187.2 0.0 1.7e-55 186.9 0.0 1.1 1 0 0 1 1 1 1 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) DeoRC PF00455.17 gi|345006156|ref|YP_004809009.1| - 3.9e-06 26.6 0.1 0.0014 18.3 0.0 2.2 1 1 1 2 2 2 2 DeoR C terminal sensor domain LysE PF01810.13 gi|345006157|ref|YP_004809010.1| - 6.7e-30 103.7 10.5 7.8e-30 103.5 7.3 1.0 1 0 0 1 1 1 1 LysE type translocator TerC PF03741.11 gi|345006157|ref|YP_004809010.1| - 0.77 9.1 7.3 0.067 12.6 0.4 2.0 1 1 0 2 2 2 0 Integral membrane protein TerC family Tox-WTIP PF15654.1 gi|345006157|ref|YP_004809010.1| - 9 6.0 8.0 1.5 8.5 1.8 2.4 1 1 1 2 2 2 0 Toxin with a conserved tryptophan and TIP tripeptide motif adh_short PF00106.20 gi|345006158|ref|YP_004809011.1| - 1.3e-24 86.9 8.9 1.7e-24 86.6 6.2 1.1 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|345006158|ref|YP_004809011.1| - 2.3e-14 53.7 0.0 3e-14 53.3 0.0 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.5 gi|345006158|ref|YP_004809011.1| - 1.7e-08 34.3 5.9 2.2e-08 34.0 4.1 1.1 1 0 0 1 1 1 1 KR domain Shikimate_DH PF01488.15 gi|345006158|ref|YP_004809011.1| - 0.022 14.8 0.1 0.033 14.2 0.1 1.4 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase 3HCDH_N PF02737.13 gi|345006158|ref|YP_004809011.1| - 0.036 13.7 0.2 0.055 13.1 0.2 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Glyoxalase_2 PF12681.2 gi|345006159|ref|YP_004809012.1| - 1.5e-10 41.6 0.2 2e-09 38.0 0.1 2.2 2 0 0 2 2 2 1 Glyoxalase-like domain Glyoxalase PF00903.20 gi|345006159|ref|YP_004809012.1| - 7.9e-06 25.8 0.0 2.7e-05 24.1 0.0 2.0 1 1 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_4 PF13669.1 gi|345006159|ref|YP_004809012.1| - 0.0036 17.2 0.0 1.2 9.2 0.0 3.0 2 1 0 2 2 2 2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AAA_16 PF13191.1 gi|345006160|ref|YP_004809013.1| - 7.1e-14 52.2 0.3 9.7e-13 48.5 0.1 2.4 2 1 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.1 gi|345006160|ref|YP_004809013.1| - 4.8e-10 39.6 0.0 9.1e-10 38.7 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA PF00004.24 gi|345006160|ref|YP_004809013.1| - 1.1e-05 25.6 0.0 2.8e-05 24.3 0.0 1.7 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Arch_ATPase PF01637.13 gi|345006160|ref|YP_004809013.1| - 2.4e-05 24.1 0.0 4.9e-05 23.1 0.0 1.5 1 1 0 1 1 1 1 Archaeal ATPase AAA_19 PF13245.1 gi|345006160|ref|YP_004809013.1| - 2.6e-05 23.9 0.0 7.2e-05 22.4 0.0 1.8 1 0 0 1 1 1 1 Part of AAA domain NACHT PF05729.7 gi|345006160|ref|YP_004809013.1| - 0.00021 20.9 0.0 0.00088 18.9 0.0 1.9 2 0 0 2 2 2 1 NACHT domain Cdc6_C PF09079.6 gi|345006160|ref|YP_004809013.1| - 0.00024 20.7 0.3 0.00094 18.8 0.1 2.2 1 1 1 2 2 2 1 CDC6, C terminal AAA_11 PF13086.1 gi|345006160|ref|YP_004809013.1| - 0.00027 20.5 0.0 0.00035 20.2 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|345006160|ref|YP_004809013.1| - 0.00045 20.1 0.0 0.00092 19.1 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|345006160|ref|YP_004809013.1| - 0.0013 18.9 0.0 0.029 14.6 0.0 2.5 2 1 0 2 2 2 1 AAA domain IstB_IS21 PF01695.12 gi|345006160|ref|YP_004809013.1| - 0.0014 18.0 0.1 1 8.7 0.0 2.5 3 0 0 3 3 3 2 IstB-like ATP binding protein AAA_17 PF13207.1 gi|345006160|ref|YP_004809013.1| - 0.0014 19.4 0.4 0.0056 17.4 0.3 2.4 1 1 0 1 1 1 1 AAA domain AAA_14 PF13173.1 gi|345006160|ref|YP_004809013.1| - 0.0019 18.1 0.0 0.02 14.7 0.0 2.0 1 1 1 2 2 2 1 AAA domain Viral_helicase1 PF01443.13 gi|345006160|ref|YP_004809013.1| - 0.011 15.3 0.0 0.016 14.7 0.0 1.3 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase AAA_35 PF14516.1 gi|345006160|ref|YP_004809013.1| - 0.012 14.2 0.0 0.12 10.9 0.0 2.0 2 0 0 2 2 2 0 AAA-like domain T2SE PF00437.15 gi|345006160|ref|YP_004809013.1| - 0.019 13.8 0.0 0.03 13.2 0.0 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein NTPase_1 PF03266.10 gi|345006160|ref|YP_004809013.1| - 0.021 14.5 0.0 0.038 13.6 0.0 1.4 1 0 0 1 1 1 0 NTPase AAA_30 PF13604.1 gi|345006160|ref|YP_004809013.1| - 0.026 14.1 0.1 0.14 11.6 0.0 2.0 2 0 0 2 2 2 0 AAA domain DUF2075 PF09848.4 gi|345006160|ref|YP_004809013.1| - 0.036 13.0 0.0 0.061 12.2 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) AAA_28 PF13521.1 gi|345006160|ref|YP_004809013.1| - 0.041 13.8 0.0 0.1 12.5 0.0 1.7 1 0 0 1 1 1 0 AAA domain Penicillinase_R PF03965.11 gi|345006160|ref|YP_004809013.1| - 0.055 13.5 0.0 0.13 12.3 0.0 1.6 1 0 0 1 1 1 0 Penicillinase repressor RNA_helicase PF00910.17 gi|345006160|ref|YP_004809013.1| - 0.064 13.4 0.0 0.12 12.5 0.0 1.5 1 0 0 1 1 1 0 RNA helicase AAA_5 PF07728.9 gi|345006160|ref|YP_004809013.1| - 0.079 12.6 0.0 0.17 11.5 0.0 1.7 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) RuvB_N PF05496.7 gi|345006160|ref|YP_004809013.1| - 0.088 11.8 0.0 0.16 10.9 0.0 1.3 1 0 0 1 1 1 0 Holliday junction DNA helicase ruvB N-terminus AAA_32 PF13654.1 gi|345006160|ref|YP_004809013.1| - 0.088 11.4 0.0 8.5 4.8 0.0 2.5 3 0 0 3 3 3 0 AAA domain AAA_24 PF13479.1 gi|345006160|ref|YP_004809013.1| - 0.11 12.0 0.0 0.18 11.3 0.0 1.3 1 0 0 1 1 1 0 AAA domain Sigma54_activat PF00158.21 gi|345006160|ref|YP_004809013.1| - 0.13 11.7 0.0 0.22 11.0 0.0 1.3 1 0 0 1 1 1 0 Sigma-54 interaction domain Rad17 PF03215.10 gi|345006160|ref|YP_004809013.1| - 0.13 10.8 0.0 0.19 10.4 0.0 1.3 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein Radical_SAM PF04055.16 gi|345006161|ref|YP_004809014.1| - 1.3e-06 28.7 0.6 0.0034 17.5 0.1 2.5 2 1 0 2 2 2 2 Radical SAM superfamily Fer4_14 PF13394.1 gi|345006161|ref|YP_004809014.1| - 0.00011 22.2 0.1 0.00019 21.4 0.1 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|345006161|ref|YP_004809014.1| - 0.0011 19.1 0.1 0.0022 18.1 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain PASTA PF03793.14 gi|345006161|ref|YP_004809014.1| - 0.023 14.3 0.0 0.12 12.0 0.0 2.1 3 0 0 3 3 3 0 PASTA domain DUF373 PF04123.8 gi|345006163|ref|YP_004809016.1| - 2.7e-110 368.6 8.5 3.2e-110 368.3 5.9 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF373) ATP_synt_I PF03899.10 gi|345006163|ref|YP_004809016.1| - 1 9.5 12.0 4.1 7.6 3.4 2.8 2 0 0 2 2 2 0 ATP synthase I chain polyprenyl_synt PF00348.12 gi|345006164|ref|YP_004809017.1| - 9.2e-52 175.4 0.1 1.3e-51 174.9 0.1 1.1 1 0 0 1 1 1 1 Polyprenyl synthetase Methyltransf_11 PF08241.7 gi|345006165|ref|YP_004809018.1| - 2e-22 79.4 0.0 2.9e-22 78.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|345006165|ref|YP_004809018.1| - 1.3e-16 60.5 0.0 1.6e-16 60.2 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|345006165|ref|YP_004809018.1| - 1.6e-15 56.8 0.0 8e-14 51.3 0.0 2.0 1 1 1 2 2 2 1 ubiE/COQ5 methyltransferase family Methyltransf_25 PF13649.1 gi|345006165|ref|YP_004809018.1| - 1.8e-14 53.9 0.0 3e-14 53.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|345006165|ref|YP_004809018.1| - 1.8e-13 50.5 0.0 2.3e-13 50.1 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|345006165|ref|YP_004809018.1| - 1.3e-12 48.2 0.0 1.9e-12 47.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|345006165|ref|YP_004809018.1| - 2.3e-12 47.2 0.0 3.4e-12 46.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|345006165|ref|YP_004809018.1| - 9.8e-09 35.2 0.0 7.6e-08 32.3 0.0 2.1 1 1 0 1 1 1 1 Methyltransferase domain MetW PF07021.7 gi|345006165|ref|YP_004809018.1| - 3.7e-05 23.1 0.0 5.2e-05 22.7 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW RrnaAD PF00398.15 gi|345006165|ref|YP_004809018.1| - 3.9e-05 22.8 0.0 5.6e-05 22.3 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase CMAS PF02353.15 gi|345006165|ref|YP_004809018.1| - 0.00017 20.7 0.0 0.00022 20.3 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_9 PF08003.6 gi|345006165|ref|YP_004809018.1| - 0.00085 18.1 0.0 0.0011 17.7 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) MTS PF05175.9 gi|345006165|ref|YP_004809018.1| - 0.0022 17.3 0.0 0.0066 15.8 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase small domain PCMT PF01135.14 gi|345006165|ref|YP_004809018.1| - 0.0039 16.7 0.0 0.0056 16.2 0.0 1.3 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_2 PF00891.13 gi|345006165|ref|YP_004809018.1| - 0.071 12.2 0.0 0.11 11.6 0.0 1.3 1 0 0 1 1 1 0 O-methyltransferase TehB PF03848.9 gi|345006165|ref|YP_004809018.1| - 0.16 11.1 0.0 0.33 10.0 0.0 1.5 2 0 0 2 2 2 0 Tellurite resistance protein TehB DUF1628 PF07790.6 gi|345006166|ref|YP_004809019.1| - 3.2e-10 40.6 0.2 5.2e-10 39.9 0.2 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1628) DUF1180 PF06679.7 gi|345006167|ref|YP_004809020.1| - 0.19 11.6 2.1 0.42 10.4 1.4 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF1180) HTH_24 PF13412.1 gi|345006168|ref|YP_004809021.1| - 0.0028 17.0 0.1 0.0044 16.3 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|345006168|ref|YP_004809021.1| - 0.0035 16.9 0.1 0.0077 15.8 0.1 1.5 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.5 gi|345006168|ref|YP_004809021.1| - 0.0093 15.5 0.0 0.023 14.2 0.0 1.7 1 0 0 1 1 1 1 IclR helix-turn-helix domain ETF PF01012.16 gi|345006169|ref|YP_004809022.1| - 3.3e-31 108.2 3.7 4.8e-31 107.6 2.5 1.3 1 0 0 1 1 1 1 Electron transfer flavoprotein domain CoA_binding_2 PF13380.1 gi|345006169|ref|YP_004809022.1| - 0.069 13.3 0.7 1 9.5 0.1 2.6 2 1 1 3 3 3 0 CoA binding domain DUF2704 PF10866.3 gi|345006169|ref|YP_004809022.1| - 0.14 11.5 0.0 0.26 10.6 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2704) ETF_alpha PF00766.14 gi|345006170|ref|YP_004809023.1| - 8.7e-34 115.0 0.2 2.9e-33 113.3 0.1 1.9 2 0 0 2 2 2 1 Electron transfer flavoprotein FAD-binding domain ETF PF01012.16 gi|345006170|ref|YP_004809023.1| - 1.1e-25 90.3 1.7 1.2e-25 90.1 0.4 1.6 2 0 0 2 2 2 1 Electron transfer flavoprotein domain ATP-synt_B PF00430.13 gi|345006171|ref|YP_004809024.1| - 0.00017 21.3 26.0 0.00076 19.2 17.3 2.0 1 1 0 1 1 1 1 ATP synthase B/B' CF(0) DUF3552 PF12072.3 gi|345006171|ref|YP_004809024.1| - 0.0018 17.5 26.1 0.021 14.0 12.8 2.4 1 1 1 2 2 2 2 Domain of unknown function (DUF3552) DUF883 PF05957.8 gi|345006171|ref|YP_004809024.1| - 0.013 15.8 16.9 0.16 12.3 4.9 2.1 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF883) HrpE PF06188.7 gi|345006171|ref|YP_004809024.1| - 0.014 15.1 15.5 0.013 15.2 8.5 1.8 1 1 1 2 2 2 0 HrpE/YscL/FliH and V-type ATPase subunit E Josephin PF02099.12 gi|345006171|ref|YP_004809024.1| - 0.049 13.2 1.1 0.062 12.9 0.8 1.4 1 1 0 1 1 1 0 Josephin DUF3435 PF11917.3 gi|345006171|ref|YP_004809024.1| - 0.2 10.3 6.2 0.21 10.2 4.3 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3435) DivIVA PF05103.8 gi|345006171|ref|YP_004809024.1| - 0.21 11.6 18.1 1.1 9.2 7.1 2.1 1 1 1 2 2 2 0 DivIVA protein DUF4102 PF13356.1 gi|345006171|ref|YP_004809024.1| - 0.61 10.0 9.1 0.88 9.4 1.3 2.5 1 1 1 2 2 2 0 Domain of unknown function (DUF4102) DUF4355 PF14265.1 gi|345006171|ref|YP_004809024.1| - 0.89 9.5 21.0 1.1 9.1 14.6 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4355) V-ATPase_G PF03179.10 gi|345006171|ref|YP_004809024.1| - 1.2 9.5 24.1 17 5.7 16.7 2.1 1 1 0 1 1 1 0 Vacuolar (H+)-ATPase G subunit Muted PF14942.1 gi|345006171|ref|YP_004809024.1| - 1.9 8.3 13.0 3.2 7.6 9.0 1.4 1 1 0 1 1 1 0 Organelle biogenesis, Muted-like protein Mnd1 PF03962.10 gi|345006171|ref|YP_004809024.1| - 2 8.0 11.5 2.5 7.7 8.0 1.1 1 0 0 1 1 1 0 Mnd1 family DUF763 PF05559.6 gi|345006171|ref|YP_004809024.1| - 2.3 7.0 4.9 2.6 6.9 3.4 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF763) ISG65-75 PF11727.3 gi|345006171|ref|YP_004809024.1| - 2.7 6.9 10.7 3.7 6.5 7.4 1.3 1 0 0 1 1 1 0 Invariant surface glycoprotein CENP-Q PF13094.1 gi|345006171|ref|YP_004809024.1| - 3.1 7.8 13.0 3.3 7.7 9.0 1.1 1 0 0 1 1 1 0 CENP-Q, a CENPA-CAD centromere complex subunit HAUS6_N PF14661.1 gi|345006171|ref|YP_004809024.1| - 3.3 7.0 10.4 4.2 6.6 7.2 1.1 1 0 0 1 1 1 0 HAUS augmin-like complex subunit 6 N-terminus ApoLp-III PF07464.6 gi|345006171|ref|YP_004809024.1| - 3.5 7.6 14.0 5.2 7.0 9.7 1.2 1 0 0 1 1 1 0 Apolipophorin-III precursor (apoLp-III) LUC7 PF03194.10 gi|345006171|ref|YP_004809024.1| - 4.1 6.8 13.9 4.6 6.6 9.6 1.0 1 0 0 1 1 1 0 LUC7 N_terminus DinB_2 PF12867.2 gi|345006171|ref|YP_004809024.1| - 5.1 7.4 6.8 5.4 7.3 2.6 2.0 1 1 1 2 2 2 0 DinB superfamily Med8 PF10232.4 gi|345006171|ref|YP_004809024.1| - 6.6 6.1 10.5 7.7 5.9 7.3 1.2 1 0 0 1 1 1 0 Mediator of RNA polymerase II transcription complex subunit 8 Atg14 PF10186.4 gi|345006171|ref|YP_004809024.1| - 6.9 5.5 6.9 7.6 5.3 4.8 1.1 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 Inositol_P PF00459.20 gi|345006171|ref|YP_004809024.1| - 7.1 5.8 7.5 8.6 5.5 5.2 1.2 1 0 0 1 1 1 0 Inositol monophosphatase family YtxH PF12732.2 gi|345006171|ref|YP_004809024.1| - 8.6 6.8 12.1 2.2e+03 -0.9 8.4 2.5 1 1 0 1 1 1 0 YtxH-like protein V_ATPase_I PF01496.14 gi|345006172|ref|YP_004809025.1| - 7.2e-65 219.2 27.1 1.2e-27 96.1 7.9 5.6 4 2 0 4 4 4 4 V-type ATPase 116kDa subunit family EMP24_GP25L PF01105.19 gi|345006172|ref|YP_004809025.1| - 0.079 12.6 0.1 3.7 7.2 0.0 2.2 2 0 0 2 2 2 0 emp24/gp25L/p24 family/GOLD TPR_MLP1_2 PF07926.7 gi|345006172|ref|YP_004809025.1| - 0.1 12.3 0.0 0.32 10.7 0.0 1.7 1 1 0 1 1 1 0 TPR/MLP1/MLP2-like protein Seryl_tRNA_N PF02403.17 gi|345006172|ref|YP_004809025.1| - 0.13 12.2 0.9 3.5 7.6 0.1 2.2 2 0 0 2 2 2 0 Seryl-tRNA synthetase N-terminal domain DUF2968 PF11180.3 gi|345006172|ref|YP_004809025.1| - 0.16 11.3 2.4 1.4 8.2 0.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2968) DUF4140 PF13600.1 gi|345006172|ref|YP_004809025.1| - 0.39 11.1 4.6 4.4 7.7 0.6 2.4 2 0 0 2 2 2 0 N-terminal domain of unknown function (DUF4140) TPD52 PF04201.10 gi|345006172|ref|YP_004809025.1| - 0.43 10.3 1.1 6.6 6.4 0.1 2.2 2 0 0 2 2 2 0 Tumour protein D52 family KfrA_N PF11740.3 gi|345006172|ref|YP_004809025.1| - 3.5 8.1 8.6 4.6 7.7 1.5 2.3 2 0 0 2 2 2 0 Plasmid replication region DNA-binding N-term ATP-synt_C PF00137.16 gi|345006173|ref|YP_004809026.1| - 2e-15 56.4 9.5 2.5e-15 56.1 6.6 1.1 1 0 0 1 1 1 1 ATP synthase subunit C vATP-synt_E PF01991.13 gi|345006174|ref|YP_004809027.1| - 5.8e-40 136.6 10.6 7.9e-40 136.2 7.3 1.2 1 0 0 1 1 1 1 ATP synthase (E/31 kDa) subunit HrpE PF06188.7 gi|345006174|ref|YP_004809027.1| - 0.00022 21.0 5.7 0.00032 20.4 4.0 1.4 1 0 0 1 1 1 1 HrpE/YscL/FliH and V-type ATPase subunit E ATP-synt_B PF00430.13 gi|345006174|ref|YP_004809027.1| - 0.0015 18.3 16.2 0.0015 18.3 11.2 2.2 1 1 1 2 2 2 2 ATP synthase B/B' CF(0) IpaD PF06511.6 gi|345006174|ref|YP_004809027.1| - 0.02 13.8 3.1 0.023 13.6 2.2 1.1 1 0 0 1 1 1 0 Invasion plasmid antigen IpaD Fmp27_WPPW PF10359.4 gi|345006174|ref|YP_004809027.1| - 0.14 10.5 1.9 0.15 10.4 1.3 1.2 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain ING PF12998.2 gi|345006174|ref|YP_004809027.1| - 0.33 11.2 4.5 0.6 10.4 3.1 1.4 1 0 0 1 1 1 0 Inhibitor of growth proteins N-terminal histone-binding OmpH PF03938.9 gi|345006174|ref|YP_004809027.1| - 2.7 7.9 10.6 3.7 7.4 7.4 1.3 1 0 0 1 1 1 0 Outer membrane protein (OmpH-like) DUF883 PF05957.8 gi|345006174|ref|YP_004809027.1| - 5.3 7.5 14.5 0.87 10.0 4.0 2.6 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF883) DivIVA PF05103.8 gi|345006174|ref|YP_004809027.1| - 6.3 6.8 13.3 50 3.9 9.2 2.3 1 1 0 1 1 1 0 DivIVA protein DUF3772 PF12607.3 gi|345006174|ref|YP_004809027.1| - 8.4 6.1 13.9 0.54 9.9 0.1 2.8 3 0 0 3 3 3 0 Protein of unknown function (DUF3772) vATP-synt_AC39 PF01992.11 gi|345006175|ref|YP_004809028.1| - 2.9e-91 306.0 1.7 3.3e-91 305.8 1.2 1.0 1 0 0 1 1 1 1 ATP synthase (C/AC39) subunit TFIIA_gamma_N PF02268.11 gi|345006175|ref|YP_004809028.1| - 0.0097 15.4 1.7 0.41 10.2 0.1 3.4 3 1 0 3 3 3 1 Transcription initiation factor IIA, gamma subunit, helical domain ATP-synt_F PF01990.12 gi|345006176|ref|YP_004809029.1| - 1.5e-16 60.5 0.0 1.8e-16 60.2 0.0 1.1 1 0 0 1 1 1 1 ATP synthase (F/14-kDa) subunit ATP-synt_ab PF00006.20 gi|345006177|ref|YP_004809030.1| - 1.2e-92 309.2 0.0 1.7e-92 308.7 0.0 1.2 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_C PF00306.22 gi|345006177|ref|YP_004809030.1| - 1.7e-17 63.9 0.2 3.3e-17 62.9 0.2 1.5 1 0 0 1 1 1 1 ATP synthase alpha/beta chain, C terminal domain ATP-synt_ab_N PF02874.18 gi|345006177|ref|YP_004809030.1| - 5.1e-12 45.8 4.7 5.1e-12 45.8 3.3 2.4 2 0 0 2 2 2 1 ATP synthase alpha/beta family, beta-barrel domain Peptidase_M23 PF01551.17 gi|345006177|ref|YP_004809030.1| - 0.045 13.8 0.2 1.8 8.6 0.0 2.6 2 0 0 2 2 2 0 Peptidase family M23 DUF1932 PF09130.6 gi|345006177|ref|YP_004809030.1| - 0.14 11.9 1.6 2 8.1 0.1 2.8 3 0 0 3 3 3 0 Domain of unknown function (DUF1932) ATP-synt_ab PF00006.20 gi|345006178|ref|YP_004809031.1| - 2.6e-59 200.3 0.0 3.4e-59 199.9 0.0 1.2 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_C PF00306.22 gi|345006178|ref|YP_004809031.1| - 1.7e-17 63.8 0.3 3.8e-17 62.7 0.2 1.6 1 0 0 1 1 1 1 ATP synthase alpha/beta chain, C terminal domain ATP-synt_ab_N PF02874.18 gi|345006178|ref|YP_004809031.1| - 8.4e-14 51.5 0.8 2.4e-13 50.0 0.5 1.9 1 0 0 1 1 1 1 ATP synthase alpha/beta family, beta-barrel domain HAS-barrel PF09378.5 gi|345006178|ref|YP_004809031.1| - 0.0031 17.3 0.4 0.012 15.4 0.3 2.2 1 0 0 1 1 1 1 HAS barrel domain YjeF_N PF03853.10 gi|345006179|ref|YP_004809032.1| - 6.1e-36 123.5 0.1 7.9e-36 123.2 0.1 1.1 1 0 0 1 1 1 1 YjeF-related protein N-terminus CaMKII_AD PF08332.5 gi|345006179|ref|YP_004809032.1| - 0.099 12.5 0.0 0.16 11.9 0.0 1.3 1 0 0 1 1 1 0 Calcium/calmodulin dependent protein kinase II Association K_channel_TID PF07941.6 gi|345006179|ref|YP_004809032.1| - 0.41 10.9 4.7 1.3 9.2 3.2 1.9 1 0 0 1 1 1 0 Potassium channel Kv1.4 tandem inactivation domain Cpn60_TCP1 PF00118.19 gi|345006180|ref|YP_004809033.1| - 7.1e-164 546.0 5.0 8e-164 545.8 3.5 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family Creatininase PF02633.9 gi|345006181|ref|YP_004809034.1| - 9.6e-64 214.6 0.6 1.1e-63 214.5 0.4 1.0 1 0 0 1 1 1 1 Creatinine amidohydrolase DrsE PF02635.10 gi|345006182|ref|YP_004809035.1| - 1.6e-16 60.4 0.1 1.8e-16 60.2 0.0 1.0 1 0 0 1 1 1 1 DsrE/DsrF-like family DrsE_2 PF13686.1 gi|345006182|ref|YP_004809035.1| - 0.00028 20.6 0.2 0.00043 20.0 0.1 1.4 1 1 0 1 1 1 1 DsrE/DsrF/DrsH-like family LMWPc PF01451.16 gi|345006182|ref|YP_004809035.1| - 0.0051 17.1 0.1 0.0062 16.8 0.0 1.1 1 0 0 1 1 1 1 Low molecular weight phosphotyrosine protein phosphatase AAA_18 PF13238.1 gi|345006183|ref|YP_004809036.1| - 1.1e-09 38.7 0.2 1.7e-09 38.0 0.1 1.4 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|345006183|ref|YP_004809036.1| - 1.6e-08 35.3 0.9 2.4e-08 34.8 0.6 1.4 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|345006183|ref|YP_004809036.1| - 4.5e-06 26.5 0.0 8e-06 25.7 0.0 1.4 1 0 0 1 1 1 1 AAA domain ADK PF00406.17 gi|345006183|ref|YP_004809036.1| - 5.7e-05 23.0 0.1 0.00014 21.7 0.1 1.7 1 1 0 1 1 1 1 Adenylate kinase RBD PF02196.10 gi|345006183|ref|YP_004809036.1| - 0.13 12.0 0.0 0.27 11.0 0.0 1.5 1 0 0 1 1 1 0 Raf-like Ras-binding domain RNA_binding PF01877.12 gi|345006184|ref|YP_004809037.1| - 6.9e-20 71.2 0.6 1.8e-19 69.8 0.4 1.7 1 1 0 1 1 1 1 RNA binding DUF3320 PF11784.3 gi|345006184|ref|YP_004809037.1| - 0.01 15.3 0.2 0.022 14.2 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3320) HPP PF04982.8 gi|345006185|ref|YP_004809038.1| - 1.1e-10 41.4 9.9 1.9e-10 40.6 6.8 1.4 1 1 0 1 1 1 1 HPP family FUSC_2 PF13515.1 gi|345006185|ref|YP_004809038.1| - 0.1 12.5 5.9 0.21 11.5 3.9 1.8 1 1 0 1 1 1 0 Fusaric acid resistance protein-like MgtE PF01769.11 gi|345006186|ref|YP_004809039.1| - 1.3e-19 70.8 13.1 1.3e-19 70.8 9.1 1.4 2 0 0 2 2 2 1 Divalent cation transporter Rax2 PF12768.2 gi|345006186|ref|YP_004809039.1| - 0.42 9.7 4.6 0.78 8.8 3.2 1.4 1 0 0 1 1 1 0 Cortical protein marker for cell polarity MgtE PF01769.11 gi|345006187|ref|YP_004809040.1| - 2.9e-19 69.7 5.2 2.9e-19 69.7 3.6 1.4 2 0 0 2 2 2 1 Divalent cation transporter MFS_1 PF07690.11 gi|345006188|ref|YP_004809041.1| - 4e-42 144.2 71.3 7.5e-36 123.5 29.2 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Peptidase_S9 PF00326.16 gi|345006189|ref|YP_004809042.1| - 7.9e-36 123.2 0.7 1.2e-35 122.6 0.5 1.2 1 0 0 1 1 1 1 Prolyl oligopeptidase family Abhydrolase_5 PF12695.2 gi|345006189|ref|YP_004809042.1| - 1.1e-11 44.7 0.3 2.2e-11 43.6 0.2 1.6 1 0 0 1 1 1 1 Alpha/beta hydrolase family Peptidase_S15 PF02129.13 gi|345006189|ref|YP_004809042.1| - 2.1e-09 37.2 0.4 3.9e-08 33.0 0.2 2.1 1 1 0 2 2 2 1 X-Pro dipeptidyl-peptidase (S15 family) DLH PF01738.13 gi|345006189|ref|YP_004809042.1| - 1.1e-08 34.6 0.9 0.00021 20.6 0.0 2.1 2 0 0 2 2 2 2 Dienelactone hydrolase family DPPIV_N PF00930.16 gi|345006189|ref|YP_004809042.1| - 1.8e-07 30.1 0.0 3.4e-06 25.9 0.0 2.9 2 1 0 2 2 2 1 Dipeptidyl peptidase IV (DPP IV) N-terminal region Abhydrolase_6 PF12697.2 gi|345006189|ref|YP_004809042.1| - 4.9e-07 29.8 5.6 1.9e-06 27.9 3.9 2.0 1 1 0 1 1 1 1 Alpha/beta hydrolase family PD40 PF07676.7 gi|345006189|ref|YP_004809042.1| - 2.8e-06 26.8 3.4 1.4 8.6 0.0 5.6 6 0 0 6 6 6 2 WD40-like Beta Propeller Repeat Esterase PF00756.15 gi|345006189|ref|YP_004809042.1| - 3.8e-05 23.2 0.5 0.0002 20.8 0.1 2.4 3 0 0 3 3 3 1 Putative esterase LIP PF03583.9 gi|345006189|ref|YP_004809042.1| - 0.0003 20.0 0.5 0.29 10.2 0.0 2.2 2 0 0 2 2 2 2 Secretory lipase Peptidase_S9_N PF02897.10 gi|345006189|ref|YP_004809042.1| - 0.00079 18.1 0.0 0.012 14.2 0.0 2.1 1 1 1 2 2 2 1 Prolyl oligopeptidase, N-terminal beta-propeller domain PQQ_2 PF13360.1 gi|345006189|ref|YP_004809042.1| - 0.00095 18.6 4.0 0.009 15.4 2.7 2.2 1 1 0 1 1 1 1 PQQ-like domain AXE1 PF05448.7 gi|345006189|ref|YP_004809042.1| - 0.02 13.4 0.0 0.42 9.0 0.0 2.1 1 1 0 1 1 1 0 Acetyl xylan esterase (AXE1) PQQ PF01011.16 gi|345006189|ref|YP_004809042.1| - 0.049 13.1 0.0 6.1 6.5 0.0 3.5 3 0 0 3 3 3 0 PQQ enzyme repeat Abhydrolase_2 PF02230.11 gi|345006189|ref|YP_004809042.1| - 0.079 12.3 0.0 0.72 9.2 0.0 2.2 2 0 0 2 2 2 0 Phospholipase/Carboxylesterase BAAT_C PF08840.6 gi|345006189|ref|YP_004809042.1| - 0.19 11.4 0.0 0.34 10.5 0.0 1.3 1 0 0 1 1 1 0 BAAT / Acyl-CoA thioester hydrolase C terminal SRP54 PF00448.17 gi|345006190|ref|YP_004809043.1| - 3.5e-62 209.3 0.1 6.7e-62 208.4 0.0 1.5 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP_SPB PF02978.14 gi|345006190|ref|YP_004809043.1| - 2.6e-29 101.5 7.7 2.6e-29 101.5 5.3 2.9 3 1 1 4 4 3 1 Signal peptide binding domain SRP54_N PF02881.14 gi|345006190|ref|YP_004809043.1| - 3e-16 59.2 0.3 3e-16 59.2 0.2 2.5 3 0 0 3 3 2 1 SRP54-type protein, helical bundle domain AAA_10 PF12846.2 gi|345006190|ref|YP_004809043.1| - 0.00013 21.5 1.4 0.00018 21.0 0.9 1.3 1 1 0 1 1 1 1 AAA-like domain CbiA PF01656.18 gi|345006190|ref|YP_004809043.1| - 0.00018 20.9 0.0 0.00056 19.3 0.0 1.8 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain MobB PF03205.9 gi|345006190|ref|YP_004809043.1| - 0.001 18.7 0.0 0.0025 17.5 0.0 1.7 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B SMC_N PF02463.14 gi|345006190|ref|YP_004809043.1| - 0.0014 17.8 0.0 0.0026 17.0 0.0 1.4 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_19 PF13245.1 gi|345006190|ref|YP_004809043.1| - 0.0047 16.6 0.0 0.085 12.6 0.0 2.7 2 0 0 2 2 2 1 Part of AAA domain Zeta_toxin PF06414.7 gi|345006190|ref|YP_004809043.1| - 0.0051 15.9 0.0 0.013 14.5 0.0 1.7 1 0 0 1 1 1 1 Zeta toxin cobW PF02492.14 gi|345006190|ref|YP_004809043.1| - 0.0055 16.1 0.2 0.033 13.6 0.1 2.1 1 1 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain APS_kinase PF01583.15 gi|345006190|ref|YP_004809043.1| - 0.0055 16.3 0.0 0.015 14.9 0.0 1.8 1 0 0 1 1 1 1 Adenylylsulphate kinase AAA_22 PF13401.1 gi|345006190|ref|YP_004809043.1| - 0.011 15.9 0.0 0.036 14.2 0.0 1.9 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.1 gi|345006190|ref|YP_004809043.1| - 0.011 15.6 0.1 0.035 14.1 0.0 1.8 2 0 0 2 2 2 0 AAA ATPase domain AAA_23 PF13476.1 gi|345006190|ref|YP_004809043.1| - 0.012 15.9 0.0 0.036 14.3 0.0 1.6 1 1 0 1 1 1 0 AAA domain Thymidylate_kin PF02223.12 gi|345006190|ref|YP_004809043.1| - 0.016 14.5 0.4 0.072 12.4 0.0 2.2 3 0 0 3 3 3 0 Thymidylate kinase AAA_33 PF13671.1 gi|345006190|ref|YP_004809043.1| - 0.018 14.9 0.0 0.035 13.9 0.0 1.5 1 0 0 1 1 1 0 AAA domain ArsA_ATPase PF02374.10 gi|345006190|ref|YP_004809043.1| - 0.02 13.9 7.5 0.026 13.5 0.0 3.4 4 0 0 4 4 4 0 Anion-transporting ATPase AAA_17 PF13207.1 gi|345006190|ref|YP_004809043.1| - 0.047 14.4 0.5 0.16 12.7 0.1 2.2 2 1 0 2 2 1 0 AAA domain KTI12 PF08433.5 gi|345006190|ref|YP_004809043.1| - 0.052 12.7 0.0 0.11 11.6 0.0 1.5 1 0 0 1 1 1 0 Chromatin associated protein KTI12 Mur_ligase_M PF08245.7 gi|345006190|ref|YP_004809043.1| - 0.098 12.7 0.2 0.33 10.9 0.0 1.8 2 0 0 2 2 2 0 Mur ligase middle domain AAA_18 PF13238.1 gi|345006190|ref|YP_004809043.1| - 0.12 12.7 0.3 0.6 10.4 0.0 2.4 3 1 0 3 3 3 0 AAA domain Proteasome PF00227.21 gi|345006191|ref|YP_004809044.1| - 8.9e-12 44.6 0.0 2e-11 43.5 0.0 1.5 1 1 0 1 1 1 1 Proteasome subunit SRP54 PF00448.17 gi|345006192|ref|YP_004809045.1| - 8.4e-66 221.1 0.2 1.3e-65 220.5 0.2 1.3 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP54_N PF02881.14 gi|345006192|ref|YP_004809045.1| - 9.1e-13 48.1 2.0 1.2e-12 47.7 0.1 2.0 2 0 0 2 2 2 1 SRP54-type protein, helical bundle domain AAA_22 PF13401.1 gi|345006192|ref|YP_004809045.1| - 0.00026 21.1 0.0 0.0013 18.9 0.0 2.0 2 0 0 2 2 2 1 AAA domain APS_kinase PF01583.15 gi|345006192|ref|YP_004809045.1| - 0.0012 18.5 0.0 0.0021 17.7 0.0 1.4 1 0 0 1 1 1 1 Adenylylsulphate kinase Zeta_toxin PF06414.7 gi|345006192|ref|YP_004809045.1| - 0.0028 16.7 0.1 0.0061 15.6 0.1 1.6 1 0 0 1 1 1 1 Zeta toxin CbiA PF01656.18 gi|345006192|ref|YP_004809045.1| - 0.0087 15.4 0.5 0.034 13.5 0.4 2.0 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain Thymidylate_kin PF02223.12 gi|345006192|ref|YP_004809045.1| - 0.012 14.9 0.1 0.12 11.7 0.0 2.3 2 0 0 2 2 2 0 Thymidylate kinase AAA_33 PF13671.1 gi|345006192|ref|YP_004809045.1| - 0.016 15.0 0.1 0.038 13.8 0.1 1.7 1 1 0 1 1 1 0 AAA domain cobW PF02492.14 gi|345006192|ref|YP_004809045.1| - 0.019 14.3 1.4 0.055 12.9 0.1 2.2 2 1 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain MobB PF03205.9 gi|345006192|ref|YP_004809045.1| - 0.023 14.3 0.1 0.068 12.8 0.0 1.8 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_16 PF13191.1 gi|345006192|ref|YP_004809045.1| - 0.03 14.2 0.0 0.03 14.2 0.0 2.4 2 2 0 2 2 2 0 AAA ATPase domain KTI12 PF08433.5 gi|345006192|ref|YP_004809045.1| - 0.035 13.3 0.0 0.058 12.5 0.0 1.3 1 0 0 1 1 1 0 Chromatin associated protein KTI12 AAA_19 PF13245.1 gi|345006192|ref|YP_004809045.1| - 0.065 13.0 0.0 0.18 11.6 0.0 1.8 1 0 0 1 1 1 0 Part of AAA domain NTPase_1 PF03266.10 gi|345006192|ref|YP_004809045.1| - 0.074 12.7 0.0 0.15 11.7 0.0 1.5 1 0 0 1 1 1 0 NTPase AAA_29 PF13555.1 gi|345006192|ref|YP_004809045.1| - 0.098 12.2 0.1 0.34 10.4 0.0 1.9 2 0 0 2 2 2 0 P-loop containing region of AAA domain eIF-3c_N PF05470.7 gi|345006192|ref|YP_004809045.1| - 0.25 9.3 3.8 0.34 8.9 2.6 1.2 1 0 0 1 1 1 0 Eukaryotic translation initiation factor 3 subunit 8 N-terminus AAA_28 PF13521.1 gi|345006192|ref|YP_004809045.1| - 0.4 10.6 3.2 0.45 10.4 0.0 2.6 3 0 0 3 3 3 0 AAA domain Prefoldin PF02996.12 gi|345006193|ref|YP_004809046.1| - 7.2e-23 80.5 4.9 7.2e-23 80.5 3.4 2.1 1 1 1 2 2 2 1 Prefoldin subunit Prefoldin_2 PF01920.15 gi|345006193|ref|YP_004809046.1| - 5.9e-05 22.7 29.6 0.019 14.6 6.4 3.2 1 1 2 3 3 3 2 Prefoldin subunit IncA PF04156.9 gi|345006193|ref|YP_004809046.1| - 0.00014 21.4 18.7 0.019 14.5 3.6 2.1 2 0 0 2 2 2 2 IncA protein ATG16 PF08614.6 gi|345006193|ref|YP_004809046.1| - 0.00018 21.4 15.2 0.033 14.0 2.4 2.1 2 0 0 2 2 2 2 Autophagy protein 16 (ATG16) APG6 PF04111.7 gi|345006193|ref|YP_004809046.1| - 0.00063 18.8 15.4 0.0083 15.2 2.5 2.0 2 0 0 2 2 2 2 Autophagy protein Apg6 TBPIP PF07106.8 gi|345006193|ref|YP_004809046.1| - 0.00065 19.2 10.5 0.028 13.9 1.3 2.1 2 0 0 2 2 2 2 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) DUF3552 PF12072.3 gi|345006193|ref|YP_004809046.1| - 0.0017 17.6 14.8 0.0068 15.6 3.0 2.2 2 0 0 2 2 2 1 Domain of unknown function (DUF3552) Mnd1 PF03962.10 gi|345006193|ref|YP_004809046.1| - 0.0024 17.5 16.3 0.039 13.6 1.0 2.1 2 0 0 2 2 2 2 Mnd1 family DivIVA PF05103.8 gi|345006193|ref|YP_004809046.1| - 0.0033 17.4 13.1 0.014 15.4 1.6 2.0 2 0 0 2 2 2 1 DivIVA protein Spc7 PF08317.6 gi|345006193|ref|YP_004809046.1| - 0.0043 15.7 16.8 0.0047 15.6 2.4 2.0 2 0 0 2 2 2 1 Spc7 kinetochore protein COG2 PF06148.6 gi|345006193|ref|YP_004809046.1| - 0.0049 16.7 5.8 0.69 9.7 1.1 2.1 2 0 0 2 2 2 2 COG (conserved oligomeric Golgi) complex component, COG2 TMF_TATA_bd PF12325.3 gi|345006193|ref|YP_004809046.1| - 0.0055 16.4 12.1 0.25 11.0 0.1 2.2 2 0 0 2 2 2 1 TATA element modulatory factor 1 TATA binding Atg14 PF10186.4 gi|345006193|ref|YP_004809046.1| - 0.0057 15.6 8.2 0.26 10.2 1.1 2.0 2 0 0 2 2 2 2 UV radiation resistance protein and autophagy-related subunit 14 Sec8_exocyst PF04048.9 gi|345006193|ref|YP_004809046.1| - 0.0063 16.1 7.2 0.068 12.8 0.1 2.1 2 0 0 2 2 2 1 Sec8 exocyst complex component specific domain AAA_13 PF13166.1 gi|345006193|ref|YP_004809046.1| - 0.0076 14.7 11.2 0.021 13.3 0.7 2.0 2 0 0 2 2 2 1 AAA domain DUF342 PF03961.8 gi|345006193|ref|YP_004809046.1| - 0.0078 14.6 5.6 0.16 10.3 0.5 2.0 2 0 0 2 2 2 1 Protein of unknown function (DUF342) AAA_27 PF13514.1 gi|345006193|ref|YP_004809046.1| - 0.013 13.2 9.9 0.02 12.6 6.9 1.2 1 0 0 1 1 1 0 AAA domain OmpH PF03938.9 gi|345006193|ref|YP_004809046.1| - 0.017 15.0 21.8 0.14 12.0 7.3 2.1 2 0 0 2 2 2 0 Outer membrane protein (OmpH-like) FlaC_arch PF05377.6 gi|345006193|ref|YP_004809046.1| - 0.019 14.8 14.0 0.24 11.3 1.1 3.3 3 2 1 4 4 3 0 Flagella accessory protein C (FlaC) CENP-F_leu_zip PF10473.4 gi|345006193|ref|YP_004809046.1| - 0.02 14.7 17.2 0.34 10.7 1.1 2.2 2 0 0 2 2 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DUF972 PF06156.8 gi|345006193|ref|YP_004809046.1| - 0.021 15.1 11.2 0.11 12.8 3.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF972) Cluap1 PF10234.4 gi|345006193|ref|YP_004809046.1| - 0.03 13.5 11.1 0.13 11.3 2.0 2.1 2 0 0 2 2 2 0 Clusterin-associated protein-1 DUF3450 PF11932.3 gi|345006193|ref|YP_004809046.1| - 0.042 13.1 18.4 0.072 12.3 5.7 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3450) CCDC-167 PF15188.1 gi|345006193|ref|YP_004809046.1| - 0.042 13.7 8.5 0.079 12.9 1.1 2.6 2 0 0 2 2 2 0 Coiled-coil domain-containing protein 167 IFT57 PF10498.4 gi|345006193|ref|YP_004809046.1| - 0.059 12.1 16.2 0.041 12.6 0.8 2.1 2 0 0 2 2 2 0 Intra-flagellar transport protein 57 TPR_MLP1_2 PF07926.7 gi|345006193|ref|YP_004809046.1| - 0.061 13.0 15.8 0.22 11.2 0.2 2.2 1 1 1 2 2 2 0 TPR/MLP1/MLP2-like protein T4SS PF07996.6 gi|345006193|ref|YP_004809046.1| - 0.063 13.1 17.6 0.95 9.2 0.4 2.2 2 0 0 2 2 2 0 Type IV secretion system proteins Reo_sigmaC PF04582.7 gi|345006193|ref|YP_004809046.1| - 0.07 12.2 3.2 4.1 6.4 0.5 2.0 1 1 0 2 2 2 0 Reovirus sigma C capsid protein CENP-Q PF13094.1 gi|345006193|ref|YP_004809046.1| - 0.083 12.9 10.2 0.31 11.0 0.9 2.2 2 0 0 2 2 2 0 CENP-Q, a CENPA-CAD centromere complex subunit Fmp27_WPPW PF10359.4 gi|345006193|ref|YP_004809046.1| - 0.085 11.2 6.1 0.22 9.9 0.8 2.0 2 0 0 2 2 2 0 RNA pol II promoter Fmp27 protein domain TMF_DNA_bd PF12329.3 gi|345006193|ref|YP_004809046.1| - 0.087 12.6 16.2 0.52 10.1 2.4 2.6 2 1 0 2 2 2 0 TATA element modulatory factor 1 DNA binding Sipho_Gp157 PF05565.6 gi|345006193|ref|YP_004809046.1| - 0.089 12.3 8.6 0.062 12.8 1.1 2.1 2 0 0 2 2 2 0 Siphovirus Gp157 GAS PF13851.1 gi|345006193|ref|YP_004809046.1| - 0.1 11.8 14.5 0.4 9.8 3.7 2.2 2 0 0 2 2 2 0 Growth-arrest specific micro-tubule binding DivIC PF04977.10 gi|345006193|ref|YP_004809046.1| - 0.1 12.1 25.3 0.043 13.2 5.0 3.0 2 1 1 3 3 2 0 Septum formation initiator Spc24 PF08286.6 gi|345006193|ref|YP_004809046.1| - 0.1 12.2 14.3 0.71 9.5 0.5 2.2 2 0 0 2 2 2 0 Spc24 subunit of Ndc80 Ax_dynein_light PF10211.4 gi|345006193|ref|YP_004809046.1| - 0.11 12.3 16.6 0.42 10.4 5.6 2.1 2 0 0 2 2 2 0 Axonemal dynein light chain Fib_alpha PF08702.5 gi|345006193|ref|YP_004809046.1| - 0.11 12.6 11.3 0.18 11.9 2.9 2.1 2 0 0 2 2 2 0 Fibrinogen alpha/beta chain family PP2C_C PF07830.8 gi|345006193|ref|YP_004809046.1| - 0.11 12.5 0.1 0.11 12.5 0.1 2.5 2 1 0 2 2 2 0 Protein serine/threonine phosphatase 2C, C-terminal domain DUF4515 PF14988.1 gi|345006193|ref|YP_004809046.1| - 0.12 12.0 15.1 0.31 10.6 3.6 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4515) Med8 PF10232.4 gi|345006193|ref|YP_004809046.1| - 0.12 11.8 10.2 0.3 10.5 2.8 2.0 2 0 0 2 2 2 0 Mediator of RNA polymerase II transcription complex subunit 8 Syntaxin-6_N PF09177.6 gi|345006193|ref|YP_004809046.1| - 0.13 12.6 7.7 1.6 9.2 0.6 2.3 2 0 0 2 2 2 0 Syntaxin 6, N-terminal Filament PF00038.16 gi|345006193|ref|YP_004809046.1| - 0.15 11.5 17.7 0.05 13.0 0.7 2.1 2 0 0 2 2 2 0 Intermediate filament protein DUF1192 PF06698.6 gi|345006193|ref|YP_004809046.1| - 0.16 11.7 8.7 2 8.2 0.5 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF1192) Herpes_UL6 PF01763.11 gi|345006193|ref|YP_004809046.1| - 0.18 9.9 5.1 0.22 9.6 1.5 1.9 2 0 0 2 2 2 0 Herpesvirus UL6 like Hemagglutinin PF00509.13 gi|345006193|ref|YP_004809046.1| - 0.21 9.6 9.2 0.18 9.8 1.2 2.0 2 0 0 2 2 2 0 Haemagglutinin DUF4140 PF13600.1 gi|345006193|ref|YP_004809046.1| - 0.25 11.8 21.3 0.31 11.5 3.5 3.0 2 1 0 2 2 2 0 N-terminal domain of unknown function (DUF4140) DUF4200 PF13863.1 gi|345006193|ref|YP_004809046.1| - 0.28 11.1 23.4 0.77 9.7 3.3 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4200) Med4 PF10018.4 gi|345006193|ref|YP_004809046.1| - 0.33 10.3 15.3 0.64 9.3 1.1 2.2 2 0 0 2 2 2 0 Vitamin-D-receptor interacting Mediator subunit 4 DUF812 PF05667.6 gi|345006193|ref|YP_004809046.1| - 0.35 9.3 22.3 0.38 9.2 3.8 2.0 1 1 0 2 2 2 0 Protein of unknown function (DUF812) Zein-binding PF04576.10 gi|345006193|ref|YP_004809046.1| - 0.36 10.9 15.0 1.2 9.2 5.4 2.5 2 0 0 2 2 2 0 Zein-binding YPEB PF14620.1 gi|345006193|ref|YP_004809046.1| - 0.36 9.7 8.9 2 7.3 1.6 2.1 2 0 0 2 2 2 0 YpeB sporulation DUF2681 PF10883.3 gi|345006193|ref|YP_004809046.1| - 0.37 11.0 17.1 1.3 9.3 2.6 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF2681) Baculo_PEP_C PF04513.7 gi|345006193|ref|YP_004809046.1| - 0.39 10.5 8.8 4.3 7.1 1.9 2.1 2 0 0 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus DUF4407 PF14362.1 gi|345006193|ref|YP_004809046.1| - 0.43 9.5 16.7 1.1 8.1 0.5 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4407) Seryl_tRNA_N PF02403.17 gi|345006193|ref|YP_004809046.1| - 0.43 10.6 12.7 0.79 9.7 1.1 2.5 2 0 0 2 2 2 0 Seryl-tRNA synthetase N-terminal domain Mitofilin PF09731.4 gi|345006193|ref|YP_004809046.1| - 0.45 9.1 10.2 0.23 10.0 1.4 2.0 2 0 0 2 2 2 0 Mitochondrial inner membrane protein DUF904 PF06005.7 gi|345006193|ref|YP_004809046.1| - 0.48 10.7 18.5 0.048 13.9 4.7 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF904) Vfa1 PF08432.5 gi|345006193|ref|YP_004809046.1| - 0.51 10.3 10.1 1.4 8.9 7.0 1.6 1 1 0 1 1 1 0 AAA-ATPase Vps4-associated protein 1 AF0941-like PF14591.1 gi|345006193|ref|YP_004809046.1| - 0.52 10.3 10.3 1.4 8.9 1.8 2.1 2 0 0 2 2 2 0 AF0941-like DUF2730 PF10805.3 gi|345006193|ref|YP_004809046.1| - 0.54 10.0 7.0 2.7 7.7 0.6 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF2730) Laminin_II PF06009.7 gi|345006193|ref|YP_004809046.1| - 0.54 10.0 10.0 1.9 8.2 0.3 2.1 2 0 0 2 2 2 0 Laminin Domain II DUF1664 PF07889.7 gi|345006193|ref|YP_004809046.1| - 0.56 10.0 14.5 1.4 8.7 1.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1664) MitMem_reg PF13012.1 gi|345006193|ref|YP_004809046.1| - 0.56 10.3 6.4 7.3 6.7 0.1 2.2 2 0 0 2 2 2 0 Maintenance of mitochondrial structure and function V_ATPase_I PF01496.14 gi|345006193|ref|YP_004809046.1| - 0.62 7.8 7.5 0.37 8.5 0.9 2.0 2 0 0 2 2 2 0 V-type ATPase 116kDa subunit family DUF3847 PF12958.2 gi|345006193|ref|YP_004809046.1| - 0.71 9.6 12.3 3.1 7.6 2.3 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3847) PEARLI-4 PF05278.7 gi|345006193|ref|YP_004809046.1| - 0.76 9.0 9.2 3.4 6.9 0.5 2.3 2 1 0 2 2 2 0 Arabidopsis phospholipase-like protein (PEARLI 4) GrpE PF01025.14 gi|345006193|ref|YP_004809046.1| - 0.77 9.2 14.9 0.89 9.0 0.8 2.2 2 0 0 2 2 2 0 GrpE HCMV_UL139 PF12507.3 gi|345006193|ref|YP_004809046.1| - 0.81 9.8 7.1 0.46 10.6 1.1 2.3 2 0 0 2 2 2 0 Human Cytomegalovirus UL139 protein Med9 PF07544.8 gi|345006193|ref|YP_004809046.1| - 0.86 9.3 16.5 1.9 8.3 3.5 2.4 2 0 0 2 2 2 0 RNA polymerase II transcription mediator complex subunit 9 SbcD_C PF12320.3 gi|345006193|ref|YP_004809046.1| - 0.92 9.5 12.9 0.82 9.7 0.6 2.5 1 1 1 2 2 2 0 Type 5 capsule protein repressor C-terminal domain DUF641 PF04859.7 gi|345006193|ref|YP_004809046.1| - 0.95 9.2 12.3 0.28 10.9 0.7 2.2 2 0 0 2 2 2 0 Plant protein of unknown function (DUF641) DUF4446 PF14584.1 gi|345006193|ref|YP_004809046.1| - 1 9.1 11.8 1.7 8.4 3.3 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF4446) CENP-H PF05837.7 gi|345006193|ref|YP_004809046.1| - 1.1 9.5 10.7 1.8 8.8 2.5 2.3 2 0 0 2 2 2 0 Centromere protein H (CENP-H) Phage_GP20 PF06810.6 gi|345006193|ref|YP_004809046.1| - 1.1 8.7 17.4 1.1 8.7 2.7 2.2 2 0 0 2 2 2 0 Phage minor structural protein GP20 FliD_C PF07195.7 gi|345006193|ref|YP_004809046.1| - 1.1 8.4 13.3 0.094 11.9 3.5 2.0 2 0 0 2 2 2 0 Flagellar hook-associated protein 2 C-terminus HrpB7 PF09486.5 gi|345006193|ref|YP_004809046.1| - 1.3 8.9 18.7 44 3.9 11.6 2.7 1 1 0 1 1 1 0 Bacterial type III secretion protein (HrpB7) NTR2 PF15458.1 gi|345006193|ref|YP_004809046.1| - 1.3 8.1 18.6 0.95 8.6 4.8 2.3 2 0 0 2 2 2 0 Nineteen complex-related protein 2 PspA_IM30 PF04012.7 gi|345006193|ref|YP_004809046.1| - 1.3 8.2 22.2 2.3 7.4 7.0 2.1 2 0 0 2 2 2 0 PspA/IM30 family DUF4337 PF14235.1 gi|345006193|ref|YP_004809046.1| - 1.4 8.7 16.4 0.84 9.4 5.4 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4337) YlqD PF11068.3 gi|345006193|ref|YP_004809046.1| - 1.4 8.9 25.9 0.97 9.4 2.1 2.4 2 1 0 2 2 2 0 YlqD protein TMPIT PF07851.8 gi|345006193|ref|YP_004809046.1| - 1.4 7.8 4.7 10 5.0 1.7 2.0 2 0 0 2 2 2 0 TMPIT-like protein ADIP PF11559.3 gi|345006193|ref|YP_004809046.1| - 1.4 8.7 15.0 3.4 7.5 5.4 2.1 2 0 0 2 2 2 0 Afadin- and alpha -actinin-Binding ATP-synt_E PF05680.7 gi|345006193|ref|YP_004809046.1| - 1.7 8.6 9.8 0.51 10.3 0.1 2.3 2 1 0 2 2 2 0 ATP synthase E chain BLOC1_2 PF10046.4 gi|345006193|ref|YP_004809046.1| - 1.7 8.8 16.9 0.82 9.8 1.9 2.8 2 1 1 3 3 3 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Tektin PF03148.9 gi|345006193|ref|YP_004809046.1| - 1.8 6.9 13.6 1.7 7.1 0.8 2.3 2 0 0 2 2 2 0 Tektin family NPV_P10 PF05531.7 gi|345006193|ref|YP_004809046.1| - 2 8.7 17.7 2.6 8.3 4.3 2.6 2 1 0 2 2 2 0 Nucleopolyhedrovirus P10 protein FemAB PF02388.11 gi|345006193|ref|YP_004809046.1| - 2.1 6.9 9.4 2.4 6.7 0.2 2.0 2 0 0 2 2 2 0 FemAB family Remorin_C PF03763.8 gi|345006193|ref|YP_004809046.1| - 2.2 7.8 9.1 1.3 8.5 1.4 2.2 2 0 0 2 2 2 0 Remorin, C-terminal region LUC7 PF03194.10 gi|345006193|ref|YP_004809046.1| - 2.2 7.7 13.1 2 7.9 1.6 2.1 2 0 0 2 2 2 0 LUC7 N_terminus DUF2203 PF09969.4 gi|345006193|ref|YP_004809046.1| - 2.4 8.3 8.2 12 6.1 1.7 2.2 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2203) ABC_tran_2 PF12848.2 gi|345006193|ref|YP_004809046.1| - 2.5 8.0 12.9 1.3 8.9 0.3 2.3 2 0 0 2 2 2 0 ABC transporter Transposase_22 PF02994.9 gi|345006193|ref|YP_004809046.1| - 2.5 6.5 10.7 1.2 7.6 3.1 2.0 2 0 0 2 2 2 0 L1 transposable element DUF607 PF04678.8 gi|345006193|ref|YP_004809046.1| - 2.7 7.8 9.8 1.1 9.1 1.2 2.2 1 1 1 2 2 2 0 Protein of unknown function, DUF607 DUF3186 PF11382.3 gi|345006193|ref|YP_004809046.1| - 3 6.9 10.7 4.8 6.2 1.2 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3186) Cep57_CLD_2 PF14197.1 gi|345006193|ref|YP_004809046.1| - 3.1 7.8 14.0 1.3 8.9 1.4 2.6 2 1 1 3 3 3 0 Centrosome localisation domain of PPC89 SlyX PF04102.7 gi|345006193|ref|YP_004809046.1| - 3.4 8.0 21.9 4.9 7.6 2.0 2.7 2 0 0 2 2 2 0 SlyX ATP-synt_D PF01813.12 gi|345006193|ref|YP_004809046.1| - 3.5 7.1 7.7 0.94 8.9 1.5 2.0 2 0 0 2 2 2 0 ATP synthase subunit D Tropomyosin_1 PF12718.2 gi|345006193|ref|YP_004809046.1| - 3.5 7.4 21.4 3.2 7.5 5.5 2.2 2 0 0 2 2 2 0 Tropomyosin like Golgin_A5 PF09787.4 gi|345006193|ref|YP_004809046.1| - 3.6 6.0 19.0 1.5 7.2 0.9 2.0 2 0 0 2 2 2 0 Golgin subfamily A member 5 EIAV_Rev PF11129.3 gi|345006193|ref|YP_004809046.1| - 3.6 7.5 7.8 1.4 8.9 1.5 2.1 2 0 0 2 2 2 0 Rev protein of equine infectious anaemia virus DUF1515 PF07439.6 gi|345006193|ref|YP_004809046.1| - 3.9 7.3 10.7 12 5.6 1.4 2.5 1 1 1 2 2 2 0 Protein of unknown function (DUF1515) Uds1 PF15456.1 gi|345006193|ref|YP_004809046.1| - 4 7.4 13.6 4.3 7.3 1.3 2.6 2 1 0 2 2 2 0 Up-regulated During Septation bZIP_1 PF00170.16 gi|345006193|ref|YP_004809046.1| - 4.3 7.3 9.9 14 5.6 0.1 2.8 2 1 1 3 3 3 0 bZIP transcription factor FliJ PF02050.11 gi|345006193|ref|YP_004809046.1| - 4.3 7.4 27.0 0.14 12.2 2.7 2.6 2 1 0 2 2 2 0 Flagellar FliJ protein AKNA PF12443.3 gi|345006193|ref|YP_004809046.1| - 4.4 7.3 15.6 5.1 7.1 4.9 2.2 2 0 0 2 2 2 0 AT-hook-containing transcription factor ERM PF00769.14 gi|345006193|ref|YP_004809046.1| - 4.4 6.7 20.3 5.7 6.3 1.5 2.2 2 0 0 2 2 2 0 Ezrin/radixin/moesin family Occludin_ELL PF07303.8 gi|345006193|ref|YP_004809046.1| - 4.6 8.0 10.2 8.4 7.1 0.6 2.3 2 0 0 2 2 2 0 Occludin homology domain DUF4618 PF15397.1 gi|345006193|ref|YP_004809046.1| - 5.1 6.3 15.8 2.2 7.5 1.3 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4618) ORF6C PF10552.4 gi|345006193|ref|YP_004809046.1| - 5.4 6.7 12.7 4 7.1 2.8 2.2 2 0 0 2 2 2 0 ORF6C domain Tropomyosin PF00261.15 gi|345006193|ref|YP_004809046.1| - 5.7 5.9 17.8 4.6 6.2 2.1 2.2 2 0 0 2 2 2 0 Tropomyosin ApoLp-III PF07464.6 gi|345006193|ref|YP_004809046.1| - 5.8 6.9 17.9 5.1 7.0 7.6 2.5 2 1 0 2 2 2 0 Apolipophorin-III precursor (apoLp-III) HAUS6_N PF14661.1 gi|345006193|ref|YP_004809046.1| - 5.9 6.1 10.5 3.8 6.7 0.1 2.0 2 0 0 2 2 2 0 HAUS augmin-like complex subunit 6 N-terminus TnpV PF14198.1 gi|345006193|ref|YP_004809046.1| - 6.9 6.6 10.8 8.9 6.2 0.8 2.2 2 0 0 2 2 2 0 Transposon-encoded protein TnpV Lebercilin PF15619.1 gi|345006193|ref|YP_004809046.1| - 7.3 5.9 16.5 7.6 5.8 4.3 2.1 2 0 0 2 2 2 0 Ciliary protein causing Leber congenital amaurosis disease DUF3373 PF11853.3 gi|345006193|ref|YP_004809046.1| - 7.7 4.9 14.4 0.98 7.8 1.4 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3373) Rootletin PF15035.1 gi|345006193|ref|YP_004809046.1| - 8.2 6.3 17.6 0.62 10.0 1.2 2.1 2 0 0 2 2 2 0 Ciliary rootlet component, centrosome cohesion EzrA PF06160.7 gi|345006193|ref|YP_004809046.1| - 9.4 4.2 16.8 4.6 5.2 3.8 2.1 2 0 0 2 2 2 0 Septation ring formation regulator, EzrA Muted PF14942.1 gi|345006193|ref|YP_004809046.1| - 9.4 6.1 15.2 7.2 6.4 1.4 2.1 2 0 0 2 2 2 0 Organelle biogenesis, Muted-like protein SPT16 PF08644.6 gi|345006193|ref|YP_004809046.1| - 9.8 5.9 10.7 16 5.2 3.2 2.2 2 0 0 2 2 2 0 FACT complex subunit (SPT16/CDC68) DUF2046 PF09755.4 gi|345006193|ref|YP_004809046.1| - 9.9 4.9 15.1 1.5 7.5 1.9 2.1 2 0 0 2 2 2 0 Uncharacterized conserved protein H4 (DUF2046) Ribosomal_L18ae PF01775.12 gi|345006194|ref|YP_004809047.1| - 5.7e-07 29.4 0.0 6.8e-07 29.2 0.0 1.1 1 0 0 1 1 1 1 Ribosomal L18ae/LX protein domain ABC2_membrane_2 PF12679.2 gi|345006195|ref|YP_004809048.1| - 2.8e-05 23.1 1.9 3.5e-05 22.8 1.3 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane PF01061.19 gi|345006195|ref|YP_004809048.1| - 0.002 17.3 1.3 0.0024 17.0 0.1 1.6 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.2 gi|345006195|ref|YP_004809048.1| - 0.02 13.9 2.1 0.041 12.9 1.4 1.5 1 1 0 1 1 1 0 ABC-2 family transporter protein GATase_3 PF07685.9 gi|345006195|ref|YP_004809048.1| - 0.063 12.8 0.0 0.077 12.5 0.0 1.2 1 0 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain G3P_antiterm PF04309.7 gi|345006195|ref|YP_004809048.1| - 0.1 11.6 0.0 0.19 10.7 0.0 1.4 1 0 0 1 1 1 0 Glycerol-3-phosphate responsive antiterminator DUF2545 PF10810.3 gi|345006195|ref|YP_004809048.1| - 0.43 11.0 2.6 26 5.3 0.1 2.8 3 0 0 3 3 3 0 Protein of unknown function (DUF2545) eIF-6 PF01912.13 gi|345006196|ref|YP_004809049.1| - 1.9e-63 213.1 0.0 2.3e-63 212.8 0.0 1.1 1 0 0 1 1 1 1 eIF-6 family Ribosomal_L31e PF01198.14 gi|345006197|ref|YP_004809050.1| - 1.1e-25 89.1 0.4 1.1e-25 89.0 0.3 1.0 1 0 0 1 1 1 1 Ribosomal protein L31e Ribosomal_L39 PF00832.15 gi|345006198|ref|YP_004809051.1| - 2e-22 78.3 6.3 2.5e-22 78.0 4.4 1.1 1 0 0 1 1 1 1 Ribosomal L39 protein Cas_Csd1 PF09709.5 gi|345006199|ref|YP_004809052.1| - 0.024 12.9 0.0 0.032 12.5 0.0 1.1 1 0 0 1 1 1 0 CRISPR-associated protein (Cas_Csd1) TrmB PF01978.14 gi|345006200|ref|YP_004809053.1| - 9.1e-15 54.1 0.1 1.4e-14 53.5 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|345006200|ref|YP_004809053.1| - 3.5e-08 32.9 0.2 5.4e-08 32.3 0.2 1.3 1 0 0 1 1 1 1 MarR family MarR PF01047.17 gi|345006200|ref|YP_004809053.1| - 1.6e-06 27.7 0.1 2.7e-06 26.9 0.1 1.4 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.1 gi|345006200|ref|YP_004809053.1| - 0.0002 21.6 0.2 0.0007 19.8 0.1 1.8 1 1 1 2 2 2 1 Winged helix DNA-binding domain Phage_rep_org_N PF09681.5 gi|345006200|ref|YP_004809053.1| - 0.00089 18.8 0.0 0.032 13.8 0.0 2.2 1 1 1 2 2 2 1 N-terminal phage replisome organiser (Phage_rep_org_N) HTH_IclR PF09339.5 gi|345006200|ref|YP_004809053.1| - 0.0011 18.5 0.2 0.0018 17.8 0.1 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_20 PF12840.2 gi|345006200|ref|YP_004809053.1| - 0.003 17.3 0.6 0.005 16.6 0.4 1.4 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|345006200|ref|YP_004809053.1| - 0.011 15.4 0.1 0.017 14.7 0.1 1.3 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_24 PF13412.1 gi|345006200|ref|YP_004809053.1| - 0.011 15.1 0.0 0.016 14.5 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding GntR PF00392.16 gi|345006200|ref|YP_004809053.1| - 0.013 14.9 1.7 0.023 14.0 1.2 1.3 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family TFIIE_alpha PF02002.12 gi|345006200|ref|YP_004809053.1| - 0.015 14.7 0.0 0.018 14.5 0.0 1.1 1 0 0 1 1 1 0 TFIIE alpha subunit HTH_Crp_2 PF13545.1 gi|345006200|ref|YP_004809053.1| - 0.069 12.9 0.3 0.097 12.4 0.2 1.3 1 1 0 1 1 1 0 Crp-like helix-turn-helix domain PALP PF00291.20 gi|345006201|ref|YP_004809054.1| - 5.7e-63 212.9 4.5 6.7e-63 212.7 3.1 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme FtsZ_C PF12327.3 gi|345006203|ref|YP_004809056.1| - 4.2e-35 119.7 0.6 4.2e-35 119.7 0.4 3.0 2 1 1 3 3 3 1 FtsZ family, C-terminal domain Tubulin PF00091.20 gi|345006203|ref|YP_004809056.1| - 4.1e-32 111.7 2.1 1.9e-31 109.5 1.4 2.0 1 1 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain ThiF PF00899.16 gi|345006203|ref|YP_004809056.1| - 0.012 15.4 0.1 0.11 12.3 0.0 2.4 2 0 0 2 2 2 0 ThiF family Shikimate_DH PF01488.15 gi|345006203|ref|YP_004809056.1| - 0.081 13.0 0.2 0.52 10.4 0.0 2.4 3 0 0 3 3 3 0 Shikimate / quinate 5-dehydrogenase Methyltransf_31 PF13847.1 gi|345006203|ref|YP_004809056.1| - 0.098 12.2 0.0 0.22 11.1 0.0 1.6 1 0 0 1 1 1 0 Methyltransferase domain FtsZ_C PF12327.3 gi|345006204|ref|YP_004809057.1| - 2.8e-35 120.2 0.7 6.3e-35 119.1 0.5 1.6 1 0 0 1 1 1 1 FtsZ family, C-terminal domain DUF4147 PF13660.1 gi|345006204|ref|YP_004809057.1| - 0.0016 17.5 0.0 0.0025 16.9 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4147) ThiF PF00899.16 gi|345006204|ref|YP_004809057.1| - 0.0066 16.2 2.3 0.084 12.7 0.3 2.5 2 0 0 2 2 2 1 ThiF family RHH_1 PF01402.16 gi|345006205|ref|YP_004809058.1| - 4.2e-10 39.0 0.1 4.9e-10 38.8 0.1 1.1 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family RHH_2 PF03693.9 gi|345006205|ref|YP_004809058.1| - 0.02 15.0 0.0 0.02 15.0 0.0 1.1 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0156) zinc_ribbon_2 PF13240.1 gi|345006206|ref|YP_004809059.1| - 3.7e-10 38.9 8.6 1.3e-06 27.6 2.2 2.4 2 0 0 2 2 2 2 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|345006206|ref|YP_004809059.1| - 1.2e-08 33.9 14.8 2e-05 23.6 3.2 2.4 2 0 0 2 2 2 2 zinc-ribbon domain DZR PF12773.2 gi|345006206|ref|YP_004809059.1| - 1.9e-08 34.0 16.3 2.9e-08 33.3 11.3 1.3 1 0 0 1 1 1 1 Double zinc ribbon RHH_1 PF01402.16 gi|345006206|ref|YP_004809059.1| - 6.8e-05 22.5 4.0 0.00011 21.9 0.7 2.5 2 1 0 2 2 2 1 Ribbon-helix-helix protein, copG family PolC_DP2 PF03833.8 gi|345006206|ref|YP_004809059.1| - 0.0055 14.4 3.6 0.007 14.1 2.5 1.1 1 0 0 1 1 1 1 DNA polymerase II large subunit DP2 DUF2981 PF11200.3 gi|345006206|ref|YP_004809059.1| - 0.016 14.3 0.7 0.02 13.9 0.5 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF2981) DUF2321 PF10083.4 gi|345006206|ref|YP_004809059.1| - 0.033 13.6 7.7 0.12 11.9 3.1 2.1 1 1 1 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2321) DUF2191 PF09957.4 gi|345006206|ref|YP_004809059.1| - 0.048 13.4 0.0 0.21 11.4 0.0 1.9 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2191) Ribosomal_L32p PF01783.18 gi|345006206|ref|YP_004809059.1| - 0.17 12.0 0.6 1.3 9.2 0.1 2.1 1 1 1 2 2 2 0 Ribosomal L32p protein family UPF0547 PF10571.4 gi|345006206|ref|YP_004809059.1| - 0.3 10.8 12.9 0.087 12.5 1.7 2.4 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Nudix_N_2 PF14803.1 gi|345006206|ref|YP_004809059.1| - 0.48 10.1 15.5 2 8.1 0.3 4.0 3 1 1 4 4 4 0 Nudix N-terminal NMD3 PF04981.8 gi|345006206|ref|YP_004809059.1| - 1.1 8.3 7.5 1.6 7.8 5.2 1.2 1 0 0 1 1 1 0 NMD3 family zinc-ribbons_6 PF07191.7 gi|345006206|ref|YP_004809059.1| - 1.2 8.9 12.4 2.8 7.7 4.3 2.1 1 1 1 2 2 2 0 zinc-ribbons HypA PF01155.14 gi|345006206|ref|YP_004809059.1| - 2.3 7.9 10.1 45 3.7 7.0 2.2 1 1 0 1 1 1 0 Hydrogenase expression/synthesis hypA family NOB1_Zn_bind PF08772.6 gi|345006206|ref|YP_004809059.1| - 3 7.7 12.2 21 5.0 4.1 2.7 1 1 1 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like TF_Zn_Ribbon PF08271.7 gi|345006206|ref|YP_004809059.1| - 3.7 6.9 10.4 3.4 7.0 2.0 3.1 3 1 1 4 4 4 0 TFIIB zinc-binding zf-NADH-PPase PF09297.6 gi|345006206|ref|YP_004809059.1| - 4.5 6.8 15.7 1.8 8.1 0.7 3.5 3 0 0 3 3 3 0 NADH pyrophosphatase zinc ribbon domain Rubredoxin PF00301.15 gi|345006206|ref|YP_004809059.1| - 4.6 7.2 10.6 8.4 6.3 2.1 3.2 2 1 0 2 2 2 0 Rubredoxin eIF-5_eIF-2B PF01873.12 gi|345006207|ref|YP_004809060.1| - 2.3e-28 98.3 0.0 3.2e-28 97.8 0.0 1.2 1 0 0 1 1 1 1 Domain found in IF2B/IF5 TRAM PF01938.15 gi|345006207|ref|YP_004809060.1| - 4.7e-08 32.6 0.7 7.9e-08 31.9 0.5 1.3 1 0 0 1 1 1 1 TRAM domain DNA_RNApol_7kD PF03604.8 gi|345006207|ref|YP_004809060.1| - 0.021 14.2 0.3 2 7.9 0.0 2.4 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit DUF2387 PF09526.5 gi|345006207|ref|YP_004809060.1| - 0.085 12.7 0.8 0.19 11.7 0.5 1.6 1 0 0 1 1 1 0 Probable metal-binding protein (DUF2387) zf-ribbon_3 PF13248.1 gi|345006207|ref|YP_004809060.1| - 0.14 11.3 0.8 12 5.2 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain HypA PF01155.14 gi|345006207|ref|YP_004809060.1| - 0.27 10.9 1.4 1.2 8.8 1.0 1.9 1 1 1 2 2 2 0 Hydrogenase expression/synthesis hypA family TF_Zn_Ribbon PF08271.7 gi|345006207|ref|YP_004809060.1| - 0.42 9.9 2.5 1.3 8.3 1.7 1.8 1 1 1 2 2 2 0 TFIIB zinc-binding zf-CCHC_6 PF15288.1 gi|345006207|ref|YP_004809060.1| - 1.8 8.2 4.0 2.2 8.0 0.3 2.3 2 0 0 2 2 2 0 Zinc knuckle E1-E2_ATPase PF00122.15 gi|345006208|ref|YP_004809061.1| - 1.4e-56 191.1 0.1 2.3e-56 190.4 0.0 1.4 1 0 0 1 1 1 1 E1-E2 ATPase Hydrolase PF00702.21 gi|345006208|ref|YP_004809061.1| - 1.2e-47 163.1 7.0 2.3e-47 162.1 4.9 1.5 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HMA PF00403.21 gi|345006208|ref|YP_004809061.1| - 1.1e-30 105.5 0.1 4.1e-14 52.4 0.0 3.6 4 0 0 4 4 4 2 Heavy-metal-associated domain HAD PF12710.2 gi|345006208|ref|YP_004809061.1| - 8.1e-13 48.9 0.4 2.5e-12 47.3 0.3 1.9 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|345006208|ref|YP_004809061.1| - 0.0043 16.6 0.7 0.014 15.0 0.3 1.8 1 1 1 2 2 2 1 haloacid dehalogenase-like hydrolase Peptidase_M24 PF00557.19 gi|345006209|ref|YP_004809062.1| - 1e-34 119.9 0.2 1.3e-34 119.5 0.1 1.2 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.13 gi|345006209|ref|YP_004809062.1| - 2.9e-07 31.0 0.0 5.6e-07 30.1 0.0 1.6 1 0 0 1 1 1 1 Creatinase/Prolidase N-terminal domain AstE_AspA PF04952.9 gi|345006210|ref|YP_004809063.1| - 5.8e-51 173.1 0.0 6.6e-51 172.9 0.0 1.0 1 0 0 1 1 1 1 Succinylglutamate desuccinylase / Aspartoacylase family PALP PF00291.20 gi|345006211|ref|YP_004809064.1| - 1.2e-55 188.9 2.5 1.4e-55 188.7 1.7 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme zf-ribbon_3 PF13248.1 gi|345006211|ref|YP_004809064.1| - 0.26 10.5 1.6 0.43 9.8 0.3 1.9 2 0 0 2 2 2 0 zinc-ribbon domain DUF1743 PF08489.6 gi|345006213|ref|YP_004809066.1| - 4.2e-31 107.1 0.0 6.8e-31 106.4 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF1743) OrfB_Zn_ribbon PF07282.6 gi|345006213|ref|YP_004809066.1| - 0.34 10.5 1.6 0.8 9.4 1.1 1.6 1 0 0 1 1 1 0 Putative transposase DNA-binding domain HTH_3 PF01381.17 gi|345006214|ref|YP_004809067.1| - 1.5e-08 34.3 0.0 2.4e-08 33.6 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.1 gi|345006214|ref|YP_004809067.1| - 2.3e-05 24.4 0.1 6.3e-05 23.1 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_19 PF12844.2 gi|345006214|ref|YP_004809067.1| - 6.8e-05 22.8 0.0 0.00012 22.0 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.7 gi|345006214|ref|YP_004809067.1| - 0.00024 20.7 0.0 0.0006 19.3 0.0 1.7 1 0 0 1 1 1 1 HTH domain Sigma70_r4 PF04545.11 gi|345006214|ref|YP_004809067.1| - 0.0024 17.1 0.0 0.0057 15.9 0.0 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_23 PF13384.1 gi|345006214|ref|YP_004809067.1| - 0.0055 16.3 0.1 0.019 14.5 0.0 2.0 2 0 0 2 2 2 1 Homeodomain-like domain HTH_25 PF13413.1 gi|345006214|ref|YP_004809067.1| - 0.021 14.4 0.0 0.038 13.6 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_28 PF13518.1 gi|345006214|ref|YP_004809067.1| - 0.042 13.8 0.0 0.087 12.8 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain GST_N_3 PF13417.1 gi|345006215|ref|YP_004809068.1| - 2.2e-14 53.3 0.0 2.5e-14 53.2 0.0 1.0 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain Glutaredoxin PF00462.19 gi|345006215|ref|YP_004809068.1| - 4.1e-14 52.3 0.2 4.7e-13 48.9 0.0 1.9 1 1 1 2 2 2 1 Glutaredoxin GST_N_2 PF13409.1 gi|345006215|ref|YP_004809068.1| - 8.3e-11 41.7 0.0 9.6e-11 41.5 0.0 1.1 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain DUF836 PF05768.9 gi|345006215|ref|YP_004809068.1| - 0.0034 17.6 0.3 0.0048 17.1 0.2 1.6 1 1 0 1 1 1 1 Glutaredoxin-like domain (DUF836) Arylsulfotrans PF05935.6 gi|345006216|ref|YP_004809069.1| - 1.1e-09 37.3 10.2 2.1e-09 36.4 2.1 3.3 1 1 1 3 3 3 1 Arylsulfotransferase (ASST) Arylsulfotran_2 PF14269.1 gi|345006216|ref|YP_004809069.1| - 4.6e-05 22.7 3.7 0.0012 18.0 2.2 2.7 1 1 0 1 1 1 1 Arylsulfotransferase (ASST) NHL PF01436.16 gi|345006216|ref|YP_004809069.1| - 1.4 9.0 6.3 4.5 7.4 0.1 3.6 4 0 0 4 4 4 0 NHL repeat Xan_ur_permease PF00860.15 gi|345006217|ref|YP_004809070.1| - 2.4e-36 125.0 42.4 3.4e-36 124.5 29.4 1.2 1 0 0 1 1 1 1 Permease family Pribosyltran PF00156.22 gi|345006218|ref|YP_004809071.1| - 7.2e-12 45.1 0.3 1.1e-11 44.5 0.2 1.3 1 0 0 1 1 1 1 Phosphoribosyl transferase domain HTH_3 PF01381.17 gi|345006218|ref|YP_004809071.1| - 0.013 15.3 0.0 0.027 14.3 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix PUA PF01472.15 gi|345006218|ref|YP_004809071.1| - 0.082 12.6 0.1 0.36 10.5 0.0 2.0 2 0 0 2 2 2 0 PUA domain Pribosyltran PF00156.22 gi|345006219|ref|YP_004809072.1| - 1.2e-12 47.6 1.9 3.7e-12 46.0 1.3 1.8 1 1 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.1 gi|345006219|ref|YP_004809072.1| - 0.0021 17.3 0.0 0.0026 16.9 0.0 1.2 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.1 gi|345006219|ref|YP_004809072.1| - 0.0086 15.3 0.1 0.013 14.8 0.1 1.3 1 0 0 1 1 1 1 Phosphoribosyl transferase DUF46 PF01864.12 gi|345006220|ref|YP_004809073.1| - 1.7e-46 158.2 0.6 1.9e-46 158.1 0.4 1.0 1 0 0 1 1 1 1 Putative integral membrane protein DUF46 CTP_transf_1 PF01148.15 gi|345006220|ref|YP_004809073.1| - 8.4e-05 22.3 4.7 0.0001 22.0 0.1 2.0 1 1 1 2 2 2 1 Cytidylyltransferase family Gly-zipper_OmpA PF13436.1 gi|345006220|ref|YP_004809073.1| - 4.5 6.9 8.5 31 4.2 5.5 2.2 1 1 0 1 1 1 0 Glycine-zipper containing OmpA-like membrane domain Prefoldin_2 PF01920.15 gi|345006221|ref|YP_004809074.1| - 1.3e-24 85.9 18.3 1.5e-24 85.8 12.7 1.0 1 0 0 1 1 1 1 Prefoldin subunit eIF3_subunit PF08597.5 gi|345006221|ref|YP_004809074.1| - 4.9e-06 26.2 5.8 6.7e-06 25.8 4.0 1.1 1 0 0 1 1 1 1 Translation initiation factor eIF3 subunit AAA_27 PF13514.1 gi|345006221|ref|YP_004809074.1| - 0.00019 19.3 11.8 0.00024 18.9 8.2 1.0 1 0 0 1 1 1 1 AAA domain ALIX_LYPXL_bnd PF13949.1 gi|345006221|ref|YP_004809074.1| - 0.00064 18.7 9.1 0.00077 18.5 6.3 1.1 1 0 0 1 1 1 1 ALIX V-shaped domain binding to HIV Prefoldin PF02996.12 gi|345006221|ref|YP_004809074.1| - 0.0027 17.3 13.6 0.31 10.6 9.4 2.4 1 1 0 1 1 1 1 Prefoldin subunit DUF4404 PF14357.1 gi|345006221|ref|YP_004809074.1| - 0.0036 17.6 7.4 0.018 15.4 0.4 2.2 2 0 0 2 2 2 1 Domain of unknown function (DUF4404) IncA PF04156.9 gi|345006221|ref|YP_004809074.1| - 0.0051 16.4 16.4 0.0063 16.1 11.4 1.1 1 0 0 1 1 1 1 IncA protein WXG100 PF06013.7 gi|345006221|ref|YP_004809074.1| - 0.012 15.5 7.9 0.047 13.7 0.2 2.7 2 1 1 3 3 3 0 Proteins of 100 residues with WXG Sigma70_ner PF04546.8 gi|345006221|ref|YP_004809074.1| - 0.015 14.9 1.2 0.015 14.9 0.9 2.1 1 1 1 2 2 2 0 Sigma-70, non-essential region MAP65_ASE1 PF03999.7 gi|345006221|ref|YP_004809074.1| - 0.017 13.7 10.2 0.086 11.4 7.1 1.8 1 1 0 1 1 1 0 Microtubule associated protein (MAP65/ASE1 family) DHC_N1 PF08385.7 gi|345006221|ref|YP_004809074.1| - 0.021 13.2 4.2 0.027 12.8 2.9 1.0 1 0 0 1 1 1 0 Dynein heavy chain, N-terminal region 1 DUF3584 PF12128.3 gi|345006221|ref|YP_004809074.1| - 0.034 11.4 9.2 0.042 11.2 6.4 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) TPR_12 PF13424.1 gi|345006221|ref|YP_004809074.1| - 0.057 13.3 0.6 0.12 12.3 0.4 1.6 1 1 0 1 1 1 0 Tetratricopeptide repeat BLOC1_2 PF10046.4 gi|345006221|ref|YP_004809074.1| - 0.079 13.1 11.6 0.41 10.7 2.8 2.4 1 1 1 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 PspA_IM30 PF04012.7 gi|345006221|ref|YP_004809074.1| - 0.097 12.0 17.4 0.18 11.1 4.5 2.1 1 1 1 2 2 2 0 PspA/IM30 family Radical_SAM_N PF08497.5 gi|345006221|ref|YP_004809074.1| - 0.1 11.4 0.4 0.12 11.2 0.3 1.1 1 0 0 1 1 1 0 Radical SAM N-terminal HJURP_C PF12347.3 gi|345006221|ref|YP_004809074.1| - 0.12 11.9 1.1 0.27 10.8 0.7 1.6 1 0 0 1 1 1 0 Holliday junction regulator protein family C-terminal repeat BRI3BP PF14965.1 gi|345006221|ref|YP_004809074.1| - 0.12 11.7 0.1 0.16 11.3 0.1 1.3 1 0 0 1 1 1 0 Negative regulator of p53/TP53 F-actin_cap_A PF01267.12 gi|345006221|ref|YP_004809074.1| - 0.12 11.3 2.1 0.16 11.0 1.5 1.0 1 0 0 1 1 1 0 F-actin capping protein alpha subunit DUF2408 PF10303.4 gi|345006221|ref|YP_004809074.1| - 0.12 12.4 7.5 0.44 10.6 1.4 2.4 1 1 0 2 2 2 0 Protein of unknown function (DUF2408) DUF310 PF03750.8 gi|345006221|ref|YP_004809074.1| - 0.14 12.3 2.0 5.4 7.2 0.2 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF310) EzrA PF06160.7 gi|345006221|ref|YP_004809074.1| - 0.14 10.2 12.1 0.2 9.8 8.4 1.2 1 0 0 1 1 1 0 Septation ring formation regulator, EzrA MAD PF05557.8 gi|345006221|ref|YP_004809074.1| - 0.15 10.1 11.5 0.19 9.7 8.0 1.1 1 0 0 1 1 1 0 Mitotic checkpoint protein DUF904 PF06005.7 gi|345006221|ref|YP_004809074.1| - 0.2 12.0 15.0 1.7 8.9 4.1 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF904) Psu PF07455.6 gi|345006221|ref|YP_004809074.1| - 0.21 11.0 3.3 0.21 11.0 1.0 1.7 1 1 1 2 2 2 0 Phage polarity suppression protein (Psu) DUF3450 PF11932.3 gi|345006221|ref|YP_004809074.1| - 0.24 10.6 14.9 0.2 10.8 2.4 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF3450) Spectrin PF00435.16 gi|345006221|ref|YP_004809074.1| - 0.29 11.4 12.5 1.7 8.9 8.7 2.1 1 1 0 1 1 1 0 Spectrin repeat Jnk-SapK_ap_N PF09744.4 gi|345006221|ref|YP_004809074.1| - 0.35 10.8 12.5 0.46 10.4 8.7 1.1 1 0 0 1 1 1 0 JNK_SAPK-associated protein-1 NPV_P10 PF05531.7 gi|345006221|ref|YP_004809074.1| - 0.36 11.0 6.7 2.1 8.6 0.5 2.3 2 0 0 2 2 2 0 Nucleopolyhedrovirus P10 protein DUF4164 PF13747.1 gi|345006221|ref|YP_004809074.1| - 0.41 10.8 12.6 0.079 13.1 1.9 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4164) PilJ PF13675.1 gi|345006221|ref|YP_004809074.1| - 0.44 10.8 9.0 11 6.4 6.1 2.2 1 1 0 1 1 1 0 Type IV pili methyl-accepting chemotaxis transducer N-term TraB PF01963.12 gi|345006221|ref|YP_004809074.1| - 0.48 9.8 4.8 0.6 9.5 3.3 1.1 1 0 0 1 1 1 0 TraB family Fib_alpha PF08702.5 gi|345006221|ref|YP_004809074.1| - 0.52 10.4 6.7 0.44 10.6 0.7 2.0 1 1 1 2 2 2 0 Fibrinogen alpha/beta chain family SlyX PF04102.7 gi|345006221|ref|YP_004809074.1| - 0.53 10.6 8.1 0.55 10.6 0.3 2.4 2 0 0 2 2 2 0 SlyX DUF3347 PF11827.3 gi|345006221|ref|YP_004809074.1| - 0.77 9.7 6.3 3 7.8 4.4 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF3347) V_ATPase_I PF01496.14 gi|345006221|ref|YP_004809074.1| - 0.8 7.4 10.7 2.2 6.0 7.5 1.5 1 1 0 1 1 1 0 V-type ATPase 116kDa subunit family DUF1759 PF03564.10 gi|345006221|ref|YP_004809074.1| - 0.84 9.4 4.0 13 5.6 0.8 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF1759) DUF1664 PF07889.7 gi|345006221|ref|YP_004809074.1| - 0.96 9.2 6.7 0.82 9.4 0.7 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF1664) FlxA PF14282.1 gi|345006221|ref|YP_004809074.1| - 0.98 9.4 14.3 0.11 12.4 2.7 2.1 2 0 0 2 2 2 0 FlxA-like protein Spc24 PF08286.6 gi|345006221|ref|YP_004809074.1| - 1 9.0 16.4 2.8 7.6 3.5 2.1 1 1 1 2 2 2 0 Spc24 subunit of Ndc80 COG2 PF06148.6 gi|345006221|ref|YP_004809074.1| - 1.1 9.0 9.0 1 9.2 1.5 2.1 1 1 1 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 bZIP_1 PF00170.16 gi|345006221|ref|YP_004809074.1| - 1.2 9.1 14.4 0.23 11.4 2.8 2.3 2 0 0 2 2 2 0 bZIP transcription factor Zw10 PF06248.8 gi|345006221|ref|YP_004809074.1| - 1.3 7.1 7.7 1.5 6.8 5.3 1.0 1 0 0 1 1 1 0 Centromere/kinetochore Zw10 Sec8_exocyst PF04048.9 gi|345006221|ref|YP_004809074.1| - 1.4 8.5 6.2 2.3 7.8 0.3 2.1 1 1 1 2 2 2 0 Sec8 exocyst complex component specific domain Laminin_I PF06008.9 gi|345006221|ref|YP_004809074.1| - 1.4 8.1 14.5 1.5 8.0 2.5 2.1 1 1 1 2 2 2 0 Laminin Domain I Tektin PF03148.9 gi|345006221|ref|YP_004809074.1| - 1.5 7.2 13.0 2.9 6.3 2.9 1.9 1 1 1 2 2 2 0 Tektin family Laminin_II PF06009.7 gi|345006221|ref|YP_004809074.1| - 1.5 8.5 8.2 8 6.2 5.7 2.0 1 1 0 1 1 1 0 Laminin Domain II TMF_TATA_bd PF12325.3 gi|345006221|ref|YP_004809074.1| - 1.6 8.5 18.5 25 4.6 12.8 2.1 1 1 0 1 1 1 0 TATA element modulatory factor 1 TATA binding Syntaxin-6_N PF09177.6 gi|345006221|ref|YP_004809074.1| - 1.9 8.9 11.0 1.6 9.1 1.2 2.2 1 1 0 2 2 2 0 Syntaxin 6, N-terminal DUF2968 PF11180.3 gi|345006221|ref|YP_004809074.1| - 2 7.7 11.4 1.4 8.3 1.9 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2968) TPR_MLP1_2 PF07926.7 gi|345006221|ref|YP_004809074.1| - 2 8.1 16.9 35 4.1 11.7 2.2 1 1 0 1 1 1 0 TPR/MLP1/MLP2-like protein TBPIP PF07106.8 gi|345006221|ref|YP_004809074.1| - 2.4 7.6 13.1 58 3.1 9.1 2.0 1 1 0 1 1 1 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) Prominin PF05478.6 gi|345006221|ref|YP_004809074.1| - 2.5 5.5 6.2 6.5 4.1 4.3 1.5 1 1 0 1 1 1 0 Prominin CDC37_N PF03234.9 gi|345006221|ref|YP_004809074.1| - 2.6 8.3 9.0 3.3 7.9 6.3 1.1 1 0 0 1 1 1 0 Cdc37 N terminal kinase binding eIF3_N PF09440.5 gi|345006221|ref|YP_004809074.1| - 2.7 8.1 9.2 0.56 10.3 1.7 2.0 1 1 1 2 2 2 0 eIF3 subunit 6 N terminal domain AMP-binding_C_2 PF14535.1 gi|345006221|ref|YP_004809074.1| - 2.9 7.9 5.0 1.3 9.1 1.1 1.9 1 1 1 2 2 2 0 AMP-binding enzyme C-terminal domain Tropomyosin_1 PF12718.2 gi|345006221|ref|YP_004809074.1| - 2.9 7.7 21.1 13 5.5 14.3 1.9 1 1 0 1 1 1 0 Tropomyosin like DUF964 PF06133.6 gi|345006221|ref|YP_004809074.1| - 3 7.9 16.9 0.79 9.7 2.9 2.8 1 1 0 2 2 2 0 Protein of unknown function (DUF964) THOC7 PF05615.8 gi|345006221|ref|YP_004809074.1| - 3.2 8.0 13.2 16 5.7 9.2 2.1 1 1 0 1 1 1 0 Tho complex subunit 7 Seryl_tRNA_N PF02403.17 gi|345006221|ref|YP_004809074.1| - 3.3 7.7 14.1 6.5 6.8 1.9 2.3 1 1 1 2 2 2 0 Seryl-tRNA synthetase N-terminal domain Rootletin PF15035.1 gi|345006221|ref|YP_004809074.1| - 3.7 7.4 13.5 4.7 7.1 9.3 1.1 1 0 0 1 1 1 0 Ciliary rootlet component, centrosome cohesion CorA PF01544.13 gi|345006221|ref|YP_004809074.1| - 3.7 6.4 9.5 9.4 5.1 6.6 1.6 1 1 0 1 1 1 0 CorA-like Mg2+ transporter protein DUF4140 PF13600.1 gi|345006221|ref|YP_004809074.1| - 3.7 8.0 13.2 1.9 8.9 1.7 2.2 2 0 0 2 2 2 0 N-terminal domain of unknown function (DUF4140) DinB_2 PF12867.2 gi|345006221|ref|YP_004809074.1| - 3.8 7.8 5.2 1.2e+02 3.0 3.6 2.2 1 1 0 1 1 1 0 DinB superfamily RmuC PF02646.11 gi|345006221|ref|YP_004809074.1| - 3.9 6.2 8.9 0.83 8.4 1.1 2.0 1 1 1 2 2 2 0 RmuC family DUF4446 PF14584.1 gi|345006221|ref|YP_004809074.1| - 4 7.2 9.2 1.2 8.9 1.5 2.0 1 1 0 2 2 2 0 Protein of unknown function (DUF4446) MCC-bdg_PDZ PF10506.4 gi|345006221|ref|YP_004809074.1| - 4.3 7.2 8.8 0.55 10.1 0.4 2.3 2 1 0 2 2 2 0 PDZ domain of MCC-2 bdg protein for Usher syndrome Hemerythrin PF01814.18 gi|345006221|ref|YP_004809074.1| - 4.3 7.4 7.8 15 5.7 5.4 1.8 1 1 0 1 1 1 0 Hemerythrin HHE cation binding domain Nup54 PF13874.1 gi|345006221|ref|YP_004809074.1| - 4.6 6.9 9.4 1.6 8.4 1.8 2.1 1 1 0 1 1 1 0 Nucleoporin complex subunit 54 Nic96 PF04097.9 gi|345006221|ref|YP_004809074.1| - 4.7 5.1 6.1 5.6 4.9 4.3 1.0 1 0 0 1 1 1 0 Nup93/Nic96 COG7 PF10191.4 gi|345006221|ref|YP_004809074.1| - 5 4.8 8.9 6.1 4.6 6.2 1.1 1 0 0 1 1 1 0 Golgi complex component 7 (COG7) Phage_GPO PF05929.6 gi|345006221|ref|YP_004809074.1| - 5.3 6.2 9.0 14 4.8 1.1 1.7 1 1 0 1 1 1 0 Phage capsid scaffolding protein (GPO) serine peptidase PEP-utilisers_N PF05524.8 gi|345006221|ref|YP_004809074.1| - 5.5 6.7 10.6 2.2 8.0 4.8 1.8 1 1 1 2 2 2 0 PEP-utilising enzyme, N-terminal CENP-F_leu_zip PF10473.4 gi|345006221|ref|YP_004809074.1| - 5.8 6.7 20.4 27 4.6 14.2 1.8 1 1 0 1 1 1 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Ax_dynein_light PF10211.4 gi|345006221|ref|YP_004809074.1| - 5.9 6.6 15.5 0.36 10.6 3.3 2.1 1 1 1 2 2 2 0 Axonemal dynein light chain IFT57 PF10498.4 gi|345006221|ref|YP_004809074.1| - 6.1 5.4 12.5 2 7.0 2.4 2.0 1 1 1 2 2 2 0 Intra-flagellar transport protein 57 Fzo_mitofusin PF04799.8 gi|345006221|ref|YP_004809074.1| - 6.2 6.1 8.2 7.7 5.8 1.6 2.1 1 1 1 2 2 2 0 fzo-like conserved region Mod_r PF07200.8 gi|345006221|ref|YP_004809074.1| - 6.4 6.6 14.8 16 5.4 10.3 1.5 1 1 0 1 1 1 0 Modifier of rudimentary (Mod(r)) protein DUF4200 PF13863.1 gi|345006221|ref|YP_004809074.1| - 6.5 6.7 15.4 6.5 6.7 4.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4200) FH2 PF02181.18 gi|345006221|ref|YP_004809074.1| - 7.4 5.3 8.0 9.6 4.9 5.6 1.1 1 0 0 1 1 1 0 Formin Homology 2 Domain PilO PF04350.8 gi|345006221|ref|YP_004809074.1| - 8 6.3 10.1 13 5.7 0.8 2.1 2 0 0 2 2 2 0 Pilus assembly protein, PilO DUF812 PF05667.6 gi|345006221|ref|YP_004809074.1| - 8.4 4.7 12.0 14 4.0 8.3 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF812) V-SNARE PF05008.10 gi|345006221|ref|YP_004809074.1| - 8.6 6.6 13.5 5.4 7.2 1.3 2.3 2 0 0 2 2 2 0 Vesicle transport v-SNARE protein N-terminus LXG PF04740.7 gi|345006221|ref|YP_004809074.1| - 8.8 6.0 11.0 6.4 6.5 1.4 2.1 1 1 1 2 2 2 0 LXG domain of WXG superfamily GAS PF13851.1 gi|345006221|ref|YP_004809074.1| - 9.7 5.3 15.8 37 3.4 11.0 1.7 1 1 0 1 1 1 0 Growth-arrest specific micro-tubule binding DUF3194 PF11419.3 gi|345006222|ref|YP_004809075.1| - 3.7e-05 23.8 1.6 4.2e-05 23.6 1.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3194) RVT_2 PF07727.9 gi|345006222|ref|YP_004809075.1| - 0.081 11.8 0.0 0.096 11.6 0.0 1.1 1 0 0 1 1 1 0 Reverse transcriptase (RNA-dependent DNA polymerase) Peptidase_M17_N PF02789.12 gi|345006222|ref|YP_004809075.1| - 0.11 12.2 0.0 0.54 10.0 0.0 1.8 2 0 0 2 2 2 0 Cytosol aminopeptidase family, N-terminal domain DUF2070 PF09843.4 gi|345006223|ref|YP_004809076.1| - 4.6e-53 179.3 0.3 9.1e-53 178.3 0.1 1.6 2 0 0 2 2 2 1 Predicted membrane protein (DUF2070) GATase PF00117.23 gi|345006224|ref|YP_004809077.1| - 2.4e-32 111.9 0.0 3e-32 111.6 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|345006224|ref|YP_004809077.1| - 1.3e-13 50.8 0.5 6.4e-12 45.3 0.1 2.8 2 1 0 2 2 2 1 Peptidase C26 GATase_3 PF07685.9 gi|345006224|ref|YP_004809077.1| - 0.021 14.4 0.1 0.038 13.5 0.1 1.4 1 0 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain Copper-bind PF00127.15 gi|345006225|ref|YP_004809078.1| - 5e-12 45.9 0.3 5e-12 45.9 0.2 1.8 2 0 0 2 2 2 1 Copper binding proteins, plastocyanin/azurin family Daxx PF03344.10 gi|345006225|ref|YP_004809078.1| - 0.039 12.4 5.9 0.044 12.2 4.1 1.1 1 0 0 1 1 1 0 Daxx Family TAT_signal PF10518.4 gi|345006225|ref|YP_004809078.1| - 0.059 13.3 0.2 0.1 12.6 0.1 1.4 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Spore_YhcN_YlaJ PF09580.5 gi|345006225|ref|YP_004809078.1| - 0.089 12.8 2.8 0.16 12.0 2.0 1.4 1 0 0 1 1 1 0 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) CDC45 PF02724.9 gi|345006225|ref|YP_004809078.1| - 1.2 7.0 5.6 1.4 6.8 3.9 1.1 1 0 0 1 1 1 0 CDC45-like protein DUF1510 PF07423.6 gi|345006225|ref|YP_004809078.1| - 1.4 8.2 8.7 2.1 7.6 6.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1510) Nop14 PF04147.7 gi|345006225|ref|YP_004809078.1| - 8.4 4.1 10.9 12 3.6 7.6 1.1 1 0 0 1 1 1 0 Nop14-like family HTH_20 PF12840.2 gi|345006226|ref|YP_004809079.1| - 3.3e-05 23.5 0.4 4.4e-05 23.2 0.3 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|345006226|ref|YP_004809079.1| - 0.0057 16.0 0.1 0.009 15.3 0.1 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|345006226|ref|YP_004809079.1| - 0.0089 15.6 0.1 0.014 15.0 0.1 1.3 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.7 gi|345006226|ref|YP_004809079.1| - 0.015 14.8 0.2 0.029 14.0 0.1 1.5 1 0 0 1 1 1 0 HTH domain FUR PF01475.14 gi|345006226|ref|YP_004809079.1| - 0.12 12.2 0.0 0.14 12.0 0.0 1.2 1 0 0 1 1 1 0 Ferric uptake regulator family HTH_IclR PF09339.5 gi|345006226|ref|YP_004809079.1| - 0.13 11.8 0.0 0.2 11.2 0.0 1.4 1 1 0 1 1 1 0 IclR helix-turn-helix domain TctB PF07331.6 gi|345006228|ref|YP_004809081.1| - 0.21 11.2 5.3 0.26 10.9 3.7 1.1 1 0 0 1 1 1 0 Tripartite tricarboxylate transporter TctB family DUF1469 PF07332.6 gi|345006228|ref|YP_004809081.1| - 3.6 7.3 6.0 0.53 10.0 0.5 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF1469) DUF968 PF06147.6 gi|345006229|ref|YP_004809082.1| - 0.15 11.9 3.0 0.48 10.3 2.1 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF968) DUF192 PF02643.10 gi|345006230|ref|YP_004809083.1| - 9.7e-20 70.2 0.0 1.1e-19 70.0 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized ACR, COG1430 TrkA_N PF02254.13 gi|345006231|ref|YP_004809084.1| - 1.2e-35 122.0 8.4 2.6e-17 62.8 0.4 2.6 2 0 0 2 2 2 2 TrkA-N domain TrkA_C PF02080.16 gi|345006231|ref|YP_004809084.1| - 2.7e-23 81.3 1.9 1.8e-11 43.4 0.0 3.6 4 0 0 4 4 4 2 TrkA-C domain KH_1 PF00013.24 gi|345006231|ref|YP_004809084.1| - 0.00039 20.0 0.6 0.15 11.7 0.1 3.4 3 0 0 3 3 3 1 KH domain XdhC_C PF13478.1 gi|345006231|ref|YP_004809084.1| - 0.001 19.3 0.6 0.012 15.9 0.1 2.4 2 0 0 2 2 2 1 XdhC Rossmann domain ADH_zinc_N PF00107.21 gi|345006231|ref|YP_004809084.1| - 0.0046 16.4 5.5 0.25 10.9 0.0 4.2 3 2 1 4 4 4 1 Zinc-binding dehydrogenase ELFV_dehydrog PF00208.16 gi|345006231|ref|YP_004809084.1| - 0.0096 15.5 0.4 0.019 14.5 0.2 1.4 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase IlvN PF07991.7 gi|345006231|ref|YP_004809084.1| - 0.011 15.1 1.1 0.024 13.9 0.2 1.9 2 0 0 2 2 2 0 Acetohydroxy acid isomeroreductase, catalytic domain AlaDh_PNT_C PF01262.16 gi|345006231|ref|YP_004809084.1| - 0.025 14.1 0.7 0.055 13.0 0.5 1.5 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_7 PF13241.1 gi|345006231|ref|YP_004809084.1| - 0.041 14.1 0.9 0.28 11.4 0.1 2.3 2 0 0 2 2 2 0 Putative NAD(P)-binding 2-Hacid_dh_C PF02826.14 gi|345006231|ref|YP_004809084.1| - 0.078 12.1 0.0 0.16 11.0 0.0 1.5 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_10 PF13460.1 gi|345006231|ref|YP_004809084.1| - 0.18 11.8 7.8 0.27 11.2 2.7 2.7 2 2 1 3 3 3 0 NADH(P)-binding Ion_trans_2 PF07885.11 gi|345006231|ref|YP_004809084.1| - 0.28 10.9 5.3 0.61 9.8 3.7 1.6 1 0 0 1 1 1 0 Ion channel NAD_binding_10 PF13460.1 gi|345006232|ref|YP_004809085.1| - 3.3e-27 95.6 1.2 4.2e-27 95.3 0.8 1.1 1 0 0 1 1 1 1 NADH(P)-binding NmrA PF05368.8 gi|345006232|ref|YP_004809085.1| - 1.1e-13 50.9 0.0 1.3e-13 50.7 0.0 1.1 1 0 0 1 1 1 1 NmrA-like family Epimerase PF01370.16 gi|345006232|ref|YP_004809085.1| - 2e-11 43.8 0.1 1e-10 41.4 0.0 2.0 2 1 1 3 3 3 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|345006232|ref|YP_004809085.1| - 2.2e-11 42.9 0.0 3.9e-11 42.1 0.0 1.3 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_4 PF07993.7 gi|345006232|ref|YP_004809085.1| - 9.2e-06 24.7 0.0 6.6e-05 21.9 0.0 2.3 2 0 0 2 2 2 1 Male sterility protein RmlD_sub_bind PF04321.12 gi|345006232|ref|YP_004809085.1| - 1.5e-05 24.0 0.0 0.011 14.5 0.0 2.1 2 0 0 2 2 2 2 RmlD substrate binding domain adh_short PF00106.20 gi|345006232|ref|YP_004809085.1| - 0.0045 16.9 1.8 0.014 15.3 0.6 2.3 1 1 1 2 2 2 1 short chain dehydrogenase DapB_N PF01113.15 gi|345006232|ref|YP_004809085.1| - 0.0092 15.8 0.0 0.017 15.0 0.0 1.4 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus Polysacc_synt_2 PF02719.10 gi|345006232|ref|YP_004809085.1| - 0.11 11.3 0.0 4.6 6.0 0.0 2.2 2 0 0 2 2 2 0 Polysaccharide biosynthesis protein DUF4260 PF14079.1 gi|345006233|ref|YP_004809086.1| - 0.57 10.0 5.2 0.31 10.8 0.1 2.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4260) DUF2101 PF09874.4 gi|345006233|ref|YP_004809086.1| - 0.69 9.3 7.6 0.027 13.9 1.3 1.6 2 0 0 2 2 2 0 Predicted membrane protein (DUF2101) Pyridoxal_deC PF00282.14 gi|345006235|ref|YP_004809088.1| - 1e-73 247.9 0.0 1.3e-73 247.6 0.0 1.0 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase conserved domain SLA_LP_auto_ag PF05889.8 gi|345006235|ref|YP_004809088.1| - 4.7e-05 22.0 0.0 7.6e-05 21.3 0.0 1.2 1 0 0 1 1 1 1 Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen) Beta_elim_lyase PF01212.16 gi|345006235|ref|YP_004809088.1| - 7.8e-05 21.9 0.0 0.00012 21.3 0.0 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase Aminotran_1_2 PF00155.16 gi|345006235|ref|YP_004809088.1| - 0.0032 16.4 0.0 0.029 13.3 0.0 2.0 2 0 0 2 2 2 1 Aminotransferase class I and II Aminotran_5 PF00266.14 gi|345006235|ref|YP_004809088.1| - 0.012 14.3 0.0 0.019 13.7 0.0 1.2 1 0 0 1 1 1 0 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.12 gi|345006235|ref|YP_004809088.1| - 0.055 12.4 0.5 0.1 11.6 0.3 1.4 1 0 0 1 1 1 0 DegT/DnrJ/EryC1/StrS aminotransferase family DUF814 PF05670.8 gi|345006235|ref|YP_004809088.1| - 0.15 11.9 0.0 0.44 10.4 0.0 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF814) OrfB_IS605 PF01385.14 gi|345006236|ref|YP_004809089.1| - 4.6e-61 206.1 1.1 5.8e-61 205.7 0.8 1.1 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|345006236|ref|YP_004809089.1| - 8.5e-19 66.9 1.0 1.9e-18 65.8 0.7 1.6 1 0 0 1 1 1 1 Putative transposase DNA-binding domain C1_3 PF07649.7 gi|345006236|ref|YP_004809089.1| - 0.065 13.2 2.9 0.17 11.9 2.0 1.8 1 0 0 1 1 1 0 C1-like domain A2L_zn_ribbon PF08792.5 gi|345006236|ref|YP_004809089.1| - 0.12 11.8 3.7 0.33 10.4 2.6 1.8 1 0 0 1 1 1 0 A2L zinc ribbon domain Ribosomal_L37ae PF01780.14 gi|345006236|ref|YP_004809089.1| - 0.22 11.4 2.5 0.23 11.3 0.3 2.0 2 0 0 2 2 2 0 Ribosomal L37ae protein family CBS PF00571.23 gi|345006238|ref|YP_004809091.1| - 3.2e-41 138.8 7.9 1.4e-13 50.3 0.5 4.3 4 0 0 4 4 4 4 CBS domain Peptidase_M24 PF00557.19 gi|345006241|ref|YP_004809094.1| - 5.1e-34 117.6 0.2 6.1e-34 117.4 0.1 1.1 1 0 0 1 1 1 1 Metallopeptidase family M24 AA_permease_2 PF13520.1 gi|345006243|ref|YP_004809096.1| - 7.3e-42 143.3 44.4 9.5e-42 143.0 30.8 1.1 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.16 gi|345006243|ref|YP_004809096.1| - 3.8e-35 121.1 40.8 5.1e-35 120.7 28.3 1.1 1 0 0 1 1 1 1 Amino acid permease Usp PF00582.21 gi|345006243|ref|YP_004809096.1| - 3.1e-25 88.9 6.9 3.3e-13 50.0 0.6 2.3 2 0 0 2 2 2 2 Universal stress protein family AA_permease_C PF13906.1 gi|345006243|ref|YP_004809096.1| - 2.8e-08 33.4 0.7 2.8e-08 33.4 0.5 2.7 2 0 0 2 2 2 1 C-terminus of AA_permease DisA_N PF02457.11 gi|345006244|ref|YP_004809097.1| - 3.7e-05 22.8 0.4 8.4e-05 21.6 0.3 1.5 1 1 0 1 1 1 1 DisA bacterial checkpoint controller nucleotide-binding HTH_38 PF13936.1 gi|345006245|ref|YP_004809098.1| - 0.067 12.7 0.1 0.17 11.4 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain Cation_efflux PF01545.16 gi|345006245|ref|YP_004809098.1| - 0.46 9.5 9.6 0.62 9.0 6.6 1.2 1 0 0 1 1 1 0 Cation efflux family DUF58 PF01882.13 gi|345006246|ref|YP_004809099.1| - 6e-20 71.1 1.0 1.6e-19 69.7 0.2 2.2 2 0 0 2 2 2 1 Protein of unknown function DUF58 DUF11 PF01345.13 gi|345006246|ref|YP_004809099.1| - 8.4e-09 35.3 1.6 8.4e-09 35.3 1.1 2.2 2 0 0 2 2 2 1 Domain of unknown function DUF11 NPCBM_assoc PF10633.4 gi|345006246|ref|YP_004809099.1| - 0.00024 21.0 0.9 0.00068 19.6 0.6 1.7 1 0 0 1 1 1 1 NPCBM-associated, NEW3 domain of alpha-galactosidase CARDB PF07705.6 gi|345006246|ref|YP_004809099.1| - 0.0012 18.8 0.0 0.0025 17.8 0.0 1.5 1 0 0 1 1 1 1 CARDB TRAP_beta PF05753.9 gi|345006246|ref|YP_004809099.1| - 0.0079 15.3 0.0 0.014 14.6 0.0 1.3 1 0 0 1 1 1 1 Translocon-associated protein beta (TRAPB) DUF308 PF03729.8 gi|345006247|ref|YP_004809100.1| - 0.018 15.0 2.4 0.029 14.3 1.7 1.3 1 0 0 1 1 1 0 Short repeat of unknown function (DUF308) NfeD PF01957.13 gi|345006247|ref|YP_004809100.1| - 0.023 14.8 0.0 0.037 14.1 0.0 1.4 1 0 0 1 1 1 0 NfeD-like C-terminal, partner-binding DUF4231 PF14015.1 gi|345006247|ref|YP_004809100.1| - 0.34 10.9 1.6 0.6 10.1 1.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF4231) DUF2749 PF10907.3 gi|345006247|ref|YP_004809100.1| - 0.45 10.4 2.3 0.68 9.8 0.1 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF2749) DUF4129 PF13559.1 gi|345006248|ref|YP_004809101.1| - 1.3e-11 44.3 6.8 2.5e-11 43.3 4.7 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4129) DUF1206 PF06724.6 gi|345006248|ref|YP_004809101.1| - 0.012 15.3 5.8 0.012 15.3 4.0 3.5 2 2 1 3 3 3 0 Domain of Unknown Function (DUF1206) DUF1183 PF06682.7 gi|345006248|ref|YP_004809101.1| - 0.027 14.0 0.0 0.6 9.6 0.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1183) NAD_binding_8 PF13450.1 gi|345006249|ref|YP_004809102.1| - 3.2e-10 39.8 0.1 6.8e-10 38.8 0.1 1.5 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Amino_oxidase PF01593.19 gi|345006249|ref|YP_004809102.1| - 5.5e-08 32.3 0.9 0.0039 16.3 0.0 2.0 1 1 1 2 2 2 2 Flavin containing amine oxidoreductase DAO PF01266.19 gi|345006249|ref|YP_004809102.1| - 0.056 12.3 2.4 0.43 9.4 1.6 2.4 1 1 0 1 1 1 0 FAD dependent oxidoreductase LMWPc PF01451.16 gi|345006250|ref|YP_004809103.1| - 1.9e-21 76.8 0.0 2.3e-21 76.5 0.0 1.1 1 0 0 1 1 1 1 Low molecular weight phosphotyrosine protein phosphatase IpaC_SipC PF09599.5 gi|345006250|ref|YP_004809103.1| - 0.15 11.0 0.0 0.17 10.8 0.0 1.1 1 0 0 1 1 1 0 Salmonella-Shigella invasin protein C (IpaC_SipC) SBF PF01758.11 gi|345006251|ref|YP_004809104.1| - 2.1e-43 147.8 13.7 2.1e-43 147.8 9.5 2.2 2 0 0 2 2 2 1 Sodium Bile acid symporter family HTH_20 PF12840.2 gi|345006252|ref|YP_004809105.1| - 6.5e-11 41.8 0.9 9.7e-11 41.3 0.1 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|345006252|ref|YP_004809105.1| - 2.2e-08 33.6 0.1 4e-08 32.8 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family GntR PF00392.16 gi|345006252|ref|YP_004809105.1| - 0.018 14.4 0.1 0.032 13.6 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_34 PF13601.1 gi|345006252|ref|YP_004809105.1| - 0.043 13.8 0.0 0.085 12.8 0.0 1.6 1 1 0 1 1 1 0 Winged helix DNA-binding domain TrmB PF01978.14 gi|345006252|ref|YP_004809105.1| - 0.054 13.2 0.0 0.098 12.3 0.0 1.5 1 1 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB PK PF00224.16 gi|345006253|ref|YP_004809106.1| - 6.7e-110 366.9 2.2 1.1e-109 366.3 1.5 1.2 1 0 0 1 1 1 1 Pyruvate kinase, barrel domain PK_C PF02887.11 gi|345006253|ref|YP_004809106.1| - 2.4e-29 101.2 1.8 6.8e-29 99.7 1.2 1.9 1 0 0 1 1 1 1 Pyruvate kinase, alpha/beta domain PEP-utilizers PF00391.18 gi|345006253|ref|YP_004809106.1| - 1.5e-12 46.8 0.5 1.5e-12 46.8 0.3 3.1 3 0 0 3 3 3 1 PEP-utilising enzyme, mobile domain HpcH_HpaI PF03328.9 gi|345006253|ref|YP_004809106.1| - 0.00054 18.9 1.1 0.00054 18.9 0.8 2.2 2 1 1 3 3 3 1 HpcH/HpaI aldolase/citrate lyase family MTHFR PF02219.12 gi|345006253|ref|YP_004809106.1| - 0.0073 15.4 0.0 0.013 14.6 0.0 1.3 1 0 0 1 1 1 1 Methylenetetrahydrofolate reductase ROK PF00480.15 gi|345006254|ref|YP_004809107.1| - 4.4e-33 114.6 0.3 6.1e-33 114.1 0.2 1.2 1 0 0 1 1 1 1 ROK family BcrAD_BadFG PF01869.15 gi|345006254|ref|YP_004809107.1| - 0.0036 16.6 0.8 0.0052 16.1 0.6 1.4 1 0 0 1 1 1 1 BadF/BadG/BcrA/BcrD ATPase family FGGY_N PF00370.16 gi|345006254|ref|YP_004809107.1| - 0.041 13.2 0.0 0.06 12.6 0.0 1.3 1 0 0 1 1 1 0 FGGY family of carbohydrate kinases, N-terminal domain ADH_N PF08240.7 gi|345006255|ref|YP_004809108.1| - 8.6e-29 99.4 1.2 1.5e-28 98.7 0.9 1.4 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.21 gi|345006255|ref|YP_004809108.1| - 4.1e-26 91.0 0.1 6.4e-26 90.4 0.1 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase AlaDh_PNT_C PF01262.16 gi|345006255|ref|YP_004809108.1| - 0.0014 18.2 0.2 0.0023 17.5 0.1 1.3 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain Aldedh PF00171.17 gi|345006256|ref|YP_004809109.1| - 1.4e-152 508.2 0.1 1.6e-152 508.1 0.1 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family DUF4375 PF14300.1 gi|345006256|ref|YP_004809109.1| - 0.072 13.0 0.4 0.14 12.1 0.3 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4375) AFOR_C PF01314.13 gi|345006257|ref|YP_004809110.1| - 1.1e-111 373.1 0.3 1.6e-111 372.6 0.2 1.2 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.10 gi|345006257|ref|YP_004809110.1| - 2.6e-69 232.6 0.0 4.1e-69 231.9 0.0 1.3 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain ABC_tran PF00005.22 gi|345006258|ref|YP_004809111.1| - 4.1e-38 130.7 0.0 1.3e-37 129.1 0.0 1.8 2 0 0 2 2 2 1 ABC transporter TOBE_2 PF08402.5 gi|345006258|ref|YP_004809111.1| - 9.4e-15 54.3 0.0 2.5e-14 52.9 0.0 1.8 1 0 0 1 1 1 1 TOBE domain AAA_21 PF13304.1 gi|345006258|ref|YP_004809111.1| - 4.9e-08 33.2 0.0 0.00021 21.3 0.0 2.3 2 0 0 2 2 2 2 AAA domain AAA_22 PF13401.1 gi|345006258|ref|YP_004809111.1| - 0.0013 18.8 4.0 0.035 14.2 0.1 2.9 2 1 0 2 2 2 1 AAA domain AAA_29 PF13555.1 gi|345006258|ref|YP_004809111.1| - 0.0017 17.8 0.3 0.049 13.1 0.0 2.3 2 0 0 2 2 2 1 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|345006258|ref|YP_004809111.1| - 0.0034 17.3 1.1 0.035 14.1 0.0 2.4 2 1 0 2 2 2 1 AAA ATPase domain DUF258 PF03193.11 gi|345006258|ref|YP_004809111.1| - 0.0059 15.8 0.0 0.015 14.5 0.0 1.6 2 0 0 2 2 2 1 Protein of unknown function, DUF258 Rad17 PF03215.10 gi|345006258|ref|YP_004809111.1| - 0.0078 14.9 0.0 0.01 14.5 0.0 1.1 1 0 0 1 1 1 1 Rad17 cell cycle checkpoint protein AAA PF00004.24 gi|345006258|ref|YP_004809111.1| - 0.015 15.5 0.0 0.11 12.7 0.0 2.2 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) Mg_chelatase PF01078.16 gi|345006258|ref|YP_004809111.1| - 0.024 13.8 0.0 0.052 12.7 0.0 1.5 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_19 PF13245.1 gi|345006258|ref|YP_004809111.1| - 0.049 13.3 0.4 0.17 11.6 0.0 2.0 2 0 0 2 2 2 0 Part of AAA domain AAA_15 PF13175.1 gi|345006258|ref|YP_004809111.1| - 0.058 12.4 0.0 2.6 7.0 0.0 2.2 2 0 0 2 2 2 0 AAA ATPase domain PhoH PF02562.11 gi|345006258|ref|YP_004809111.1| - 0.065 12.4 0.1 8 5.6 0.0 2.2 2 0 0 2 2 2 0 PhoH-like protein AAA_23 PF13476.1 gi|345006258|ref|YP_004809111.1| - 0.12 12.7 0.0 0.12 12.7 0.0 2.0 3 0 0 3 3 2 0 AAA domain SBP_bac_8 PF13416.1 gi|345006259|ref|YP_004809112.1| - 4.1e-32 112.0 8.2 4.5e-32 111.9 5.3 1.3 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.1 gi|345006259|ref|YP_004809112.1| - 1.3e-25 90.1 1.6 1.8e-25 89.6 1.1 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.1 gi|345006259|ref|YP_004809112.1| - 5.6e-08 32.7 0.0 1.2e-07 31.5 0.0 1.5 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.20 gi|345006259|ref|YP_004809112.1| - 9.8e-05 22.2 6.5 0.00062 19.5 4.5 2.0 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein TAT_signal PF10518.4 gi|345006259|ref|YP_004809112.1| - 0.13 12.3 7.2 0.28 11.2 5.0 1.6 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence BPD_transp_1 PF00528.17 gi|345006260|ref|YP_004809113.1| - 2.3e-18 66.3 17.0 2.3e-18 66.3 11.8 2.1 1 1 0 2 2 2 2 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.17 gi|345006261|ref|YP_004809114.1| - 5.1e-08 32.6 27.9 6.6e-07 29.0 19.4 2.4 1 1 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component DUF2839 PF10999.3 gi|345006261|ref|YP_004809114.1| - 0.12 12.4 1.1 0.59 10.2 0.1 2.6 1 1 1 2 2 2 0 Protein of unknown function (DUF2839) DUF2781 PF10914.3 gi|345006261|ref|YP_004809114.1| - 0.13 12.0 8.3 0.03 14.1 2.9 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF2781) AsnC_trans_reg PF01037.16 gi|345006262|ref|YP_004809115.1| - 2e-14 53.0 0.2 3.1e-13 49.2 0.0 2.2 2 0 0 2 2 2 1 AsnC family HTH_24 PF13412.1 gi|345006262|ref|YP_004809115.1| - 5.4e-14 51.3 0.4 8.7e-14 50.6 0.2 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.1 gi|345006262|ref|YP_004809115.1| - 2.1e-13 49.5 2.9 2.1e-13 49.5 2.0 1.7 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain HTH_IclR PF09339.5 gi|345006262|ref|YP_004809115.1| - 4.2e-07 29.4 0.1 7.3e-06 25.4 0.0 2.5 2 1 1 3 3 3 1 IclR helix-turn-helix domain MarR_2 PF12802.2 gi|345006262|ref|YP_004809115.1| - 1.3e-06 27.9 0.3 4.4e-06 26.2 0.1 1.9 2 0 0 2 2 2 1 MarR family MarR PF01047.17 gi|345006262|ref|YP_004809115.1| - 5.1e-06 26.0 0.1 1.4e-05 24.7 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.2 gi|345006262|ref|YP_004809115.1| - 2.6e-05 23.9 0.1 6.1e-05 22.7 0.1 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.7 gi|345006262|ref|YP_004809115.1| - 6.7e-05 22.4 0.2 0.00013 21.5 0.1 1.4 1 0 0 1 1 1 1 HTH domain HTH_27 PF13463.1 gi|345006262|ref|YP_004809115.1| - 7.9e-05 22.9 0.8 0.00045 20.4 0.1 2.2 2 1 0 2 2 2 1 Winged helix DNA-binding domain NapD PF03927.8 gi|345006262|ref|YP_004809115.1| - 0.0008 19.1 0.2 0.0038 17.0 0.1 1.9 2 0 0 2 2 2 1 NapD protein Fe_dep_repress PF01325.14 gi|345006262|ref|YP_004809115.1| - 0.0014 18.5 0.0 0.0033 17.3 0.0 1.6 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain TrmB PF01978.14 gi|345006262|ref|YP_004809115.1| - 0.0015 18.1 0.1 0.0045 16.6 0.0 1.8 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_34 PF13601.1 gi|345006262|ref|YP_004809115.1| - 0.012 15.6 0.0 0.022 14.7 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain FeoC PF09012.5 gi|345006262|ref|YP_004809115.1| - 0.021 14.5 0.0 0.036 13.7 0.0 1.4 1 0 0 1 1 1 0 FeoC like transcriptional regulator EAP30 PF04157.11 gi|345006262|ref|YP_004809115.1| - 0.023 13.8 0.0 0.035 13.2 0.0 1.3 1 0 0 1 1 1 0 EAP30/Vps36 family Ftsk_gamma PF09397.5 gi|345006262|ref|YP_004809115.1| - 0.026 14.2 0.1 0.056 13.1 0.0 1.5 1 0 0 1 1 1 0 Ftsk gamma domain RPA_C PF08784.6 gi|345006262|ref|YP_004809115.1| - 0.037 14.4 0.0 0.1 13.0 0.0 1.7 2 0 0 2 2 2 0 Replication protein A C terminal DUF2250 PF10007.4 gi|345006262|ref|YP_004809115.1| - 0.04 13.8 0.6 0.44 10.4 0.0 2.1 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) LexA_DNA_bind PF01726.11 gi|345006262|ref|YP_004809115.1| - 0.053 13.0 0.0 0.094 12.2 0.0 1.5 1 0 0 1 1 1 0 LexA DNA binding domain HTH_DeoR PF08220.7 gi|345006262|ref|YP_004809115.1| - 0.089 12.3 0.1 0.19 11.2 0.1 1.5 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain HTH_5 PF01022.15 gi|345006262|ref|YP_004809115.1| - 0.11 12.1 0.0 0.24 11.0 0.0 1.6 2 0 0 2 2 1 0 Bacterial regulatory protein, arsR family Amidinotransf PF02274.12 gi|345006263|ref|YP_004809116.1| - 6.6e-39 133.6 0.0 7.4e-39 133.5 0.0 1.0 1 0 0 1 1 1 1 Amidinotransferase DAO PF01266.19 gi|345006264|ref|YP_004809117.1| - 1e-65 222.0 1.3 1.1e-65 221.8 0.9 1.0 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|345006264|ref|YP_004809117.1| - 2.5e-09 36.5 0.6 3.8e-09 35.8 0.4 1.3 1 0 0 1 1 1 1 FAD binding domain Pyr_redox_2 PF07992.9 gi|345006264|ref|YP_004809117.1| - 8.5e-06 25.7 0.8 0.00022 21.1 0.5 2.2 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Trp_halogenase PF04820.9 gi|345006264|ref|YP_004809117.1| - 0.00027 19.7 2.9 0.0028 16.3 0.0 2.1 2 0 0 2 2 2 1 Tryptophan halogenase NAD_binding_8 PF13450.1 gi|345006264|ref|YP_004809117.1| - 0.00037 20.4 2.1 0.0013 18.7 1.5 2.0 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.9 gi|345006264|ref|YP_004809117.1| - 0.00057 18.4 2.5 0.33 9.3 0.0 2.1 2 0 0 2 2 2 2 HI0933-like protein Pyr_redox PF00070.22 gi|345006264|ref|YP_004809117.1| - 0.0013 19.1 0.7 0.075 13.4 0.2 2.4 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|345006264|ref|YP_004809117.1| - 0.0014 18.7 1.6 0.054 13.5 1.1 2.2 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase TrkA_N PF02254.13 gi|345006264|ref|YP_004809117.1| - 0.0015 18.4 0.6 0.051 13.5 0.1 2.5 2 0 0 2 2 2 1 TrkA-N domain FAD_binding_3 PF01494.14 gi|345006264|ref|YP_004809117.1| - 0.0021 17.1 0.1 0.012 14.6 0.0 1.9 2 0 0 2 2 2 1 FAD binding domain FAD_oxidored PF12831.2 gi|345006264|ref|YP_004809117.1| - 0.013 14.5 0.8 0.035 13.1 0.6 1.6 1 1 0 1 1 1 0 FAD dependent oxidoreductase GMC_oxred_N PF00732.14 gi|345006264|ref|YP_004809117.1| - 0.015 14.5 0.2 0.79 8.8 0.0 2.1 2 0 0 2 2 2 0 GMC oxidoreductase Amino_oxidase PF01593.19 gi|345006264|ref|YP_004809117.1| - 0.017 14.2 0.3 0.017 14.2 0.2 1.5 2 0 0 2 2 2 0 Flavin containing amine oxidoreductase NAD_binding_9 PF13454.1 gi|345006264|ref|YP_004809117.1| - 0.044 13.5 4.2 0.84 9.3 0.1 2.8 3 0 0 3 3 3 0 FAD-NAD(P)-binding Lycopene_cycl PF05834.7 gi|345006264|ref|YP_004809117.1| - 0.052 12.4 1.2 0.079 11.8 0.8 1.3 1 0 0 1 1 1 0 Lycopene cyclase protein Thi4 PF01946.12 gi|345006264|ref|YP_004809117.1| - 0.07 12.2 1.1 0.1 11.7 0.2 1.7 2 0 0 2 2 2 0 Thi4 family GIDA PF01134.17 gi|345006264|ref|YP_004809117.1| - 1.2 7.9 4.2 1.7 7.3 1.9 1.9 2 0 0 2 2 2 0 Glucose inhibited division protein A Aminotran_3 PF00202.16 gi|345006265|ref|YP_004809118.1| - 3.8e-65 219.9 0.1 4.8e-65 219.6 0.1 1.1 1 0 0 1 1 1 1 Aminotransferase class-III DAO PF01266.19 gi|345006266|ref|YP_004809119.1| - 1.8e-57 194.9 3.5 2.1e-57 194.6 2.4 1.0 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|345006266|ref|YP_004809119.1| - 1.1e-05 24.5 7.2 8.5e-05 21.5 5.0 2.0 1 1 0 1 1 1 1 FAD binding domain FAD_binding_3 PF01494.14 gi|345006266|ref|YP_004809119.1| - 0.00015 20.9 1.8 0.015 14.3 0.0 2.3 2 0 0 2 2 2 2 FAD binding domain Pyr_redox PF00070.22 gi|345006266|ref|YP_004809119.1| - 0.00032 21.0 1.4 0.023 15.1 0.8 2.4 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.1 gi|345006266|ref|YP_004809119.1| - 0.00049 20.0 1.5 0.0013 18.6 1.0 1.8 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.9 gi|345006266|ref|YP_004809119.1| - 0.0018 16.8 0.0 0.096 11.1 0.0 2.1 2 0 0 2 2 2 1 HI0933-like protein FAD_oxidored PF12831.2 gi|345006266|ref|YP_004809119.1| - 0.0032 16.5 3.2 0.011 14.8 2.2 1.8 1 1 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.9 gi|345006266|ref|YP_004809119.1| - 0.012 15.5 2.0 0.49 10.2 1.4 2.2 1 1 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Trp_halogenase PF04820.9 gi|345006266|ref|YP_004809119.1| - 0.014 14.0 0.8 1.7 7.1 0.4 2.1 2 0 0 2 2 2 0 Tryptophan halogenase GMC_oxred_N PF00732.14 gi|345006266|ref|YP_004809119.1| - 0.043 12.9 0.0 2.9 6.9 0.0 2.1 2 0 0 2 2 2 0 GMC oxidoreductase Lycopene_cycl PF05834.7 gi|345006266|ref|YP_004809119.1| - 0.078 11.8 1.1 0.83 8.5 1.1 1.9 2 0 0 2 2 2 0 Lycopene cyclase protein DUF360 PF04020.8 gi|345006267|ref|YP_004809120.1| - 0.43 10.9 4.9 0.71 10.2 3.4 1.4 1 1 0 1 1 1 0 Membrane protein of unknown function DUF983 PF06170.7 gi|345006267|ref|YP_004809120.1| - 0.45 10.6 2.1 1.6 8.8 0.6 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF983) DUF161 PF02588.10 gi|345006267|ref|YP_004809120.1| - 1.3 9.4 9.1 5.7 7.3 6.3 1.9 1 1 0 1 1 1 0 Uncharacterized BCR, YitT family COG1284 GtrA PF04138.9 gi|345006267|ref|YP_004809120.1| - 5 7.1 7.5 32 4.5 5.2 1.9 1 1 0 1 1 1 0 GtrA-like protein DDE_Tnp_IS66 PF03050.9 gi|345006269|ref|YP_004809122.1| - 8.4e-53 179.3 0.1 8.4e-53 179.3 0.1 2.3 2 1 1 3 3 3 1 Transposase IS66 family DUF904 PF06005.7 gi|345006269|ref|YP_004809122.1| - 2.7e-10 40.3 5.7 9e-10 38.7 3.9 1.9 1 0 0 1 1 1 1 Protein of unknown function (DUF904) DUF972 PF06156.8 gi|345006269|ref|YP_004809122.1| - 0.00018 21.8 4.6 0.00052 20.3 3.2 1.7 1 0 0 1 1 1 1 Protein of unknown function (DUF972) CASP_C PF08172.7 gi|345006269|ref|YP_004809122.1| - 0.00025 20.1 2.2 0.00042 19.4 1.5 1.2 1 0 0 1 1 1 1 CASP C terminal bZIP_1 PF00170.16 gi|345006269|ref|YP_004809122.1| - 0.0021 17.9 7.9 0.0043 16.9 5.5 1.5 1 0 0 1 1 1 1 bZIP transcription factor SPX PF03105.14 gi|345006269|ref|YP_004809122.1| - 0.0024 17.7 0.1 0.0035 17.1 0.1 1.2 1 0 0 1 1 1 1 SPX domain Striatin PF08232.7 gi|345006269|ref|YP_004809122.1| - 0.0024 18.1 4.3 0.0051 17.1 3.0 1.5 1 0 0 1 1 1 1 Striatin family Tektin PF03148.9 gi|345006269|ref|YP_004809122.1| - 0.0041 15.7 2.6 0.0067 15.0 1.8 1.2 1 0 0 1 1 1 1 Tektin family DDE_Tnp_IS240 PF13610.1 gi|345006269|ref|YP_004809122.1| - 0.0083 16.1 0.7 0.018 15.0 0.0 1.9 2 1 0 2 2 1 1 DDE domain HOOK PF05622.7 gi|345006269|ref|YP_004809122.1| - 0.011 13.5 2.2 0.016 13.0 1.6 1.1 1 0 0 1 1 1 0 HOOK protein zf-IS66 PF13005.2 gi|345006269|ref|YP_004809122.1| - 0.017 15.1 8.8 0.047 13.6 6.1 1.8 1 1 0 1 1 1 0 zinc-finger binding domain of transposase IS66 HALZ PF02183.13 gi|345006269|ref|YP_004809122.1| - 0.033 13.8 5.2 0.094 12.4 3.6 1.8 1 0 0 1 1 1 0 Homeobox associated leucine zipper FlaC_arch PF05377.6 gi|345006269|ref|YP_004809122.1| - 0.035 13.9 2.8 0.079 12.8 2.0 1.6 1 0 0 1 1 1 0 Flagella accessory protein C (FlaC) ERM PF00769.14 gi|345006269|ref|YP_004809122.1| - 0.049 13.1 6.2 0.11 11.9 4.3 1.5 1 0 0 1 1 1 0 Ezrin/radixin/moesin family Fmp27_WPPW PF10359.4 gi|345006269|ref|YP_004809122.1| - 0.057 11.8 1.7 0.078 11.3 1.2 1.1 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain IncA PF04156.9 gi|345006269|ref|YP_004809122.1| - 0.059 12.9 6.1 0.12 11.9 4.2 1.5 1 0 0 1 1 1 0 IncA protein GAS PF13851.1 gi|345006269|ref|YP_004809122.1| - 0.071 12.3 5.1 0.13 11.4 3.5 1.3 1 0 0 1 1 1 0 Growth-arrest specific micro-tubule binding V_ATPase_I PF01496.14 gi|345006269|ref|YP_004809122.1| - 0.081 10.7 2.2 0.1 10.4 1.5 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family DUF1875 PF08961.5 gi|345006269|ref|YP_004809122.1| - 0.099 11.9 3.5 0.17 11.1 2.4 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1875) SpoVR PF04293.8 gi|345006269|ref|YP_004809122.1| - 0.12 10.7 4.7 0.18 10.1 3.2 1.2 1 0 0 1 1 1 0 SpoVR like protein NUDE_C PF04880.8 gi|345006269|ref|YP_004809122.1| - 0.16 12.3 3.2 0.3 11.4 2.2 1.4 1 0 0 1 1 1 0 NUDE protein, C-terminal conserved region TMF_DNA_bd PF12329.3 gi|345006269|ref|YP_004809122.1| - 0.19 11.5 8.9 0.46 10.3 6.2 1.5 1 0 0 1 1 1 0 TATA element modulatory factor 1 DNA binding Shugoshin_N PF07558.6 gi|345006269|ref|YP_004809122.1| - 0.33 10.7 5.9 0.15 11.8 1.9 2.0 1 1 0 1 1 1 0 Shugoshin N-terminal coiled-coil region Atg14 PF10186.4 gi|345006269|ref|YP_004809122.1| - 0.36 9.7 3.5 0.66 8.8 2.5 1.4 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 DivIC PF04977.10 gi|345006269|ref|YP_004809122.1| - 0.36 10.3 8.3 0.86 9.1 5.4 1.8 1 1 0 1 1 1 0 Septum formation initiator Daxx PF03344.10 gi|345006269|ref|YP_004809122.1| - 0.4 9.1 6.8 0.6 8.5 4.7 1.2 1 0 0 1 1 1 0 Daxx Family Sipho_Gp157 PF05565.6 gi|345006269|ref|YP_004809122.1| - 0.45 10.0 3.1 0.72 9.4 2.1 1.2 1 0 0 1 1 1 0 Siphovirus Gp157 Synaptobrevin PF00957.16 gi|345006269|ref|YP_004809122.1| - 0.46 10.1 2.2 0.84 9.2 1.5 1.3 1 0 0 1 1 1 0 Synaptobrevin ADIP PF11559.3 gi|345006269|ref|YP_004809122.1| - 0.56 10.0 7.1 1.2 9.0 4.9 1.5 1 0 0 1 1 1 0 Afadin- and alpha -actinin-Binding DUF2205 PF10224.4 gi|345006269|ref|YP_004809122.1| - 0.6 9.7 6.0 1.2 8.7 4.2 1.4 1 0 0 1 1 1 0 Predicted coiled-coil protein (DUF2205) TBPIP PF07106.8 gi|345006269|ref|YP_004809122.1| - 0.73 9.3 5.0 0.41 10.1 2.0 1.7 2 0 0 2 2 1 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) EMP24_GP25L PF01105.19 gi|345006269|ref|YP_004809122.1| - 0.82 9.3 6.0 6.1 6.5 2.9 2.1 2 0 0 2 2 2 0 emp24/gp25L/p24 family/GOLD Prefoldin_2 PF01920.15 gi|345006269|ref|YP_004809122.1| - 0.85 9.4 8.1 1.6 8.4 5.6 1.4 1 0 0 1 1 1 0 Prefoldin subunit bZIP_2 PF07716.10 gi|345006269|ref|YP_004809122.1| - 0.86 9.4 14.5 0.8 9.5 6.4 2.6 1 1 1 2 2 2 0 Basic region leucine zipper APG6 PF04111.7 gi|345006269|ref|YP_004809122.1| - 2.2 7.2 7.1 3.5 6.5 4.9 1.2 1 0 0 1 1 1 0 Autophagy protein Apg6 NYD-SP28_assoc PF14775.1 gi|345006269|ref|YP_004809122.1| - 3.1 7.5 9.2 5.8 6.6 5.2 2.3 1 1 1 2 2 2 0 Sperm tail C-terminal domain TSC22 PF01166.13 gi|345006269|ref|YP_004809122.1| - 3.5 7.6 14.5 28 4.7 8.0 3.2 2 1 0 2 2 2 0 TSC-22/dip/bun family DUF2391 PF09622.5 gi|345006271|ref|YP_004809124.1| - 1.5e-42 145.6 7.2 2.9e-42 144.6 5.0 1.4 1 1 0 1 1 1 1 Putative integral membrane protein (DUF2391) DUF1435 PF07256.7 gi|345006271|ref|YP_004809124.1| - 0.0097 15.8 0.9 0.032 14.2 0.0 2.3 2 0 0 2 2 2 1 Protein of unknown function (DUF1435) DUF4131 PF13567.1 gi|345006271|ref|YP_004809124.1| - 2.5 7.4 7.9 2.4 7.5 3.4 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4131) T2SE PF00437.15 gi|345006272|ref|YP_004809125.1| - 7.3e-28 97.2 0.1 1.1e-27 96.6 0.0 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_29 PF13555.1 gi|345006272|ref|YP_004809125.1| - 0.0016 17.9 0.0 0.0033 16.9 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|345006272|ref|YP_004809125.1| - 0.0022 18.3 0.0 0.004 17.5 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|345006272|ref|YP_004809125.1| - 0.01 16.6 0.5 0.069 13.9 0.0 2.6 3 1 0 3 3 2 0 AAA domain AAA_22 PF13401.1 gi|345006272|ref|YP_004809125.1| - 0.019 15.0 0.0 0.044 13.9 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.1 gi|345006272|ref|YP_004809125.1| - 0.021 14.7 0.1 0.15 12.0 0.0 2.4 2 0 0 2 2 2 0 AAA ATPase domain DUF258 PF03193.11 gi|345006272|ref|YP_004809125.1| - 0.026 13.7 0.0 0.046 12.8 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_10 PF12846.2 gi|345006272|ref|YP_004809125.1| - 0.035 13.5 0.0 0.054 12.9 0.0 1.4 1 0 0 1 1 1 0 AAA-like domain AAA_33 PF13671.1 gi|345006272|ref|YP_004809125.1| - 0.038 13.8 0.2 0.16 11.8 0.0 2.1 2 0 0 2 2 2 0 AAA domain MobB PF03205.9 gi|345006272|ref|YP_004809125.1| - 0.13 11.9 0.0 0.31 10.7 0.0 1.6 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA PF00004.24 gi|345006272|ref|YP_004809125.1| - 0.14 12.3 0.5 0.49 10.5 0.4 2.0 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) UDPG_MGDP_dh PF00984.14 gi|345006272|ref|YP_004809125.1| - 0.21 11.8 0.0 13 6.1 0.0 2.3 2 0 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, central domain NB-ARC PF00931.17 gi|345006272|ref|YP_004809125.1| - 0.28 9.9 0.0 0.77 8.5 0.0 1.6 2 0 0 2 2 2 0 NB-ARC domain T2SF PF00482.18 gi|345006273|ref|YP_004809126.1| - 5.9e-15 55.2 0.4 7.6e-08 32.3 0.1 2.5 2 0 0 2 2 2 2 Type II secretion system (T2SS), protein F HALZ PF02183.13 gi|345006273|ref|YP_004809126.1| - 0.13 12.0 0.1 0.26 11.0 0.0 1.4 1 0 0 1 1 1 0 Homeobox associated leucine zipper DUF1628 PF07790.6 gi|345006274|ref|YP_004809127.1| - 0.00037 21.1 0.3 0.00067 20.3 0.2 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF1628) ATG_C PF09333.6 gi|345006276|ref|YP_004809129.1| - 0.13 12.3 0.2 0.23 11.6 0.1 1.3 1 0 0 1 1 1 0 ATG C terminal domain PKD PF00801.15 gi|345006279|ref|YP_004809132.1| - 0.00015 21.3 0.4 0.26 11.0 0.0 2.4 2 0 0 2 2 2 2 PKD domain DPM3 PF08285.6 gi|345006281|ref|YP_004809134.1| - 0.025 14.4 0.3 0.03 14.1 0.2 1.1 1 0 0 1 1 1 0 Dolichol-phosphate mannosyltransferase subunit 3 (DPM3) DUF2628 PF10947.3 gi|345006281|ref|YP_004809134.1| - 0.41 10.4 3.0 0.45 10.3 2.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2628) MFS_1 PF07690.11 gi|345006282|ref|YP_004809135.1| - 5.6e-39 133.8 59.3 4.1e-29 101.4 24.0 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.2 gi|345006282|ref|YP_004809135.1| - 1.6e-06 27.7 4.3 0.072 12.8 0.1 3.7 3 1 0 3 3 3 2 MFS_1 like family Sugar_tr PF00083.19 gi|345006282|ref|YP_004809135.1| - 0.0016 17.1 10.5 0.0016 17.1 7.3 3.2 1 1 2 3 3 3 2 Sugar (and other) transporter CbiA PF01656.18 gi|345006284|ref|YP_004809137.1| - 1.6e-23 83.1 0.1 2e-23 82.8 0.1 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|345006284|ref|YP_004809137.1| - 9.6e-10 38.6 0.0 1.2e-09 38.2 0.0 1.1 1 0 0 1 1 1 1 AAA domain Fer4_NifH PF00142.13 gi|345006284|ref|YP_004809137.1| - 5.5e-07 29.0 0.0 0.0013 17.9 0.0 2.1 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family ArsA_ATPase PF02374.10 gi|345006284|ref|YP_004809137.1| - 4.4e-05 22.6 0.4 0.00049 19.2 0.6 1.9 2 0 0 2 2 2 1 Anion-transporting ATPase AAA_26 PF13500.1 gi|345006284|ref|YP_004809137.1| - 0.00046 19.8 0.3 0.014 15.0 0.0 2.2 2 0 0 2 2 2 1 AAA domain MipZ PF09140.6 gi|345006284|ref|YP_004809137.1| - 0.0027 16.8 0.5 0.012 14.7 0.3 1.8 1 1 0 1 1 1 1 ATPase MipZ VirC1 PF07015.6 gi|345006284|ref|YP_004809137.1| - 0.023 13.7 0.4 0.035 13.1 0.3 1.3 1 0 0 1 1 1 0 VirC1 protein YhjQ PF06564.7 gi|345006284|ref|YP_004809137.1| - 0.029 13.7 0.1 0.043 13.1 0.1 1.3 1 0 0 1 1 1 0 YhjQ protein Cys_Met_Meta_PP PF01053.15 gi|345006284|ref|YP_004809137.1| - 0.059 11.6 0.0 0.091 11.0 0.0 1.3 1 0 0 1 1 1 0 Cys/Met metabolism PLP-dependent enzyme SKI PF01202.17 gi|345006284|ref|YP_004809137.1| - 0.077 12.8 0.2 3 7.6 0.1 2.2 2 0 0 2 2 2 0 Shikimate kinase ParA PF10609.4 gi|345006284|ref|YP_004809137.1| - 0.1 12.4 0.0 0.18 11.7 0.0 1.4 1 0 0 1 1 1 0 ParA/MinD ATPase like AAA_25 PF13481.1 gi|345006284|ref|YP_004809137.1| - 0.24 10.7 5.2 0.074 12.4 1.3 2.0 3 1 0 3 3 3 0 AAA domain Aminotran_1_2 PF00155.16 gi|345006285|ref|YP_004809138.1| - 2.9e-15 56.1 0.0 4e-15 55.6 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class I and II DUF2868 PF11067.3 gi|345006285|ref|YP_004809138.1| - 0.13 11.4 0.0 5.3 6.0 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2868) Peptidase_M19 PF01244.16 gi|345006286|ref|YP_004809139.1| - 4e-87 292.1 0.0 4.5e-87 291.9 0.0 1.0 1 0 0 1 1 1 1 Membrane dipeptidase (Peptidase family M19) Amidohydro_2 PF04909.9 gi|345006286|ref|YP_004809139.1| - 8.3e-07 28.8 0.8 1.2e-06 28.2 0.5 1.3 1 0 0 1 1 1 1 Amidohydrolase UDG PF03167.14 gi|345006287|ref|YP_004809140.1| - 4.8e-34 117.0 0.0 6e-34 116.7 0.0 1.0 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily Epimerase_2 PF02350.14 gi|345006287|ref|YP_004809140.1| - 0.028 13.1 0.0 0.039 12.7 0.0 1.2 1 0 0 1 1 1 0 UDP-N-acetylglucosamine 2-epimerase GATase PF00117.23 gi|345006288|ref|YP_004809141.1| - 1.4e-31 109.4 0.0 1.6e-31 109.3 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I GATase_3 PF07685.9 gi|345006288|ref|YP_004809141.1| - 2.5e-08 33.6 0.0 5e-08 32.6 0.0 1.5 1 1 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain SNO PF01174.14 gi|345006288|ref|YP_004809141.1| - 4.8e-06 26.3 0.0 0.0022 17.6 0.0 2.1 2 0 0 2 2 2 2 SNO glutamine amidotransferase family Peptidase_C26 PF07722.8 gi|345006288|ref|YP_004809141.1| - 2.1e-05 24.0 0.2 0.00042 19.8 0.1 2.4 1 1 0 1 1 1 1 Peptidase C26 DJ-1_PfpI PF01965.19 gi|345006288|ref|YP_004809141.1| - 0.00032 20.1 0.0 0.00051 19.5 0.0 1.6 1 1 0 1 1 1 1 DJ-1/PfpI family GATase_5 PF13507.1 gi|345006288|ref|YP_004809141.1| - 0.035 13.0 0.0 0.36 9.6 0.0 2.3 2 1 0 2 2 2 0 CobB/CobQ-like glutamine amidotransferase domain DDE_Tnp_IS66 PF03050.9 gi|345006290|ref|YP_004809143.1| - 8.4e-53 179.3 0.1 8.4e-53 179.3 0.1 2.3 2 1 1 3 3 3 1 Transposase IS66 family DUF904 PF06005.7 gi|345006290|ref|YP_004809143.1| - 2.7e-10 40.3 5.7 9e-10 38.7 3.9 1.9 1 0 0 1 1 1 1 Protein of unknown function (DUF904) DUF972 PF06156.8 gi|345006290|ref|YP_004809143.1| - 0.00018 21.8 4.6 0.00052 20.3 3.2 1.7 1 0 0 1 1 1 1 Protein of unknown function (DUF972) CASP_C PF08172.7 gi|345006290|ref|YP_004809143.1| - 0.00025 20.1 2.2 0.00042 19.4 1.5 1.2 1 0 0 1 1 1 1 CASP C terminal bZIP_1 PF00170.16 gi|345006290|ref|YP_004809143.1| - 0.0021 17.9 7.9 0.0043 16.9 5.5 1.5 1 0 0 1 1 1 1 bZIP transcription factor SPX PF03105.14 gi|345006290|ref|YP_004809143.1| - 0.0024 17.7 0.1 0.0035 17.1 0.1 1.2 1 0 0 1 1 1 1 SPX domain Striatin PF08232.7 gi|345006290|ref|YP_004809143.1| - 0.0024 18.1 4.3 0.0051 17.1 3.0 1.5 1 0 0 1 1 1 1 Striatin family Tektin PF03148.9 gi|345006290|ref|YP_004809143.1| - 0.0041 15.7 2.6 0.0067 15.0 1.8 1.2 1 0 0 1 1 1 1 Tektin family DDE_Tnp_IS240 PF13610.1 gi|345006290|ref|YP_004809143.1| - 0.0083 16.1 0.7 0.018 15.0 0.0 1.9 2 1 0 2 2 1 1 DDE domain HOOK PF05622.7 gi|345006290|ref|YP_004809143.1| - 0.011 13.5 2.2 0.016 13.0 1.6 1.1 1 0 0 1 1 1 0 HOOK protein zf-IS66 PF13005.2 gi|345006290|ref|YP_004809143.1| - 0.017 15.1 8.8 0.047 13.6 6.1 1.8 1 1 0 1 1 1 0 zinc-finger binding domain of transposase IS66 HALZ PF02183.13 gi|345006290|ref|YP_004809143.1| - 0.033 13.8 5.2 0.094 12.4 3.6 1.8 1 0 0 1 1 1 0 Homeobox associated leucine zipper FlaC_arch PF05377.6 gi|345006290|ref|YP_004809143.1| - 0.035 13.9 2.8 0.079 12.8 2.0 1.6 1 0 0 1 1 1 0 Flagella accessory protein C (FlaC) ERM PF00769.14 gi|345006290|ref|YP_004809143.1| - 0.049 13.1 6.2 0.11 11.9 4.3 1.5 1 0 0 1 1 1 0 Ezrin/radixin/moesin family Fmp27_WPPW PF10359.4 gi|345006290|ref|YP_004809143.1| - 0.057 11.8 1.7 0.078 11.3 1.2 1.1 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain IncA PF04156.9 gi|345006290|ref|YP_004809143.1| - 0.059 12.9 6.1 0.12 11.9 4.2 1.5 1 0 0 1 1 1 0 IncA protein GAS PF13851.1 gi|345006290|ref|YP_004809143.1| - 0.071 12.3 5.1 0.13 11.4 3.5 1.3 1 0 0 1 1 1 0 Growth-arrest specific micro-tubule binding V_ATPase_I PF01496.14 gi|345006290|ref|YP_004809143.1| - 0.081 10.7 2.2 0.1 10.4 1.5 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family DUF1875 PF08961.5 gi|345006290|ref|YP_004809143.1| - 0.099 11.9 3.5 0.17 11.1 2.4 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1875) SpoVR PF04293.8 gi|345006290|ref|YP_004809143.1| - 0.12 10.7 4.7 0.18 10.1 3.2 1.2 1 0 0 1 1 1 0 SpoVR like protein NUDE_C PF04880.8 gi|345006290|ref|YP_004809143.1| - 0.16 12.3 3.2 0.3 11.4 2.2 1.4 1 0 0 1 1 1 0 NUDE protein, C-terminal conserved region TMF_DNA_bd PF12329.3 gi|345006290|ref|YP_004809143.1| - 0.19 11.5 8.9 0.46 10.3 6.2 1.5 1 0 0 1 1 1 0 TATA element modulatory factor 1 DNA binding Shugoshin_N PF07558.6 gi|345006290|ref|YP_004809143.1| - 0.33 10.7 5.9 0.15 11.8 1.9 2.0 1 1 0 1 1 1 0 Shugoshin N-terminal coiled-coil region Atg14 PF10186.4 gi|345006290|ref|YP_004809143.1| - 0.36 9.7 3.5 0.66 8.8 2.5 1.4 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 DivIC PF04977.10 gi|345006290|ref|YP_004809143.1| - 0.36 10.3 8.3 0.86 9.1 5.4 1.8 1 1 0 1 1 1 0 Septum formation initiator Daxx PF03344.10 gi|345006290|ref|YP_004809143.1| - 0.4 9.1 6.8 0.6 8.5 4.7 1.2 1 0 0 1 1 1 0 Daxx Family Sipho_Gp157 PF05565.6 gi|345006290|ref|YP_004809143.1| - 0.45 10.0 3.1 0.72 9.4 2.1 1.2 1 0 0 1 1 1 0 Siphovirus Gp157 Synaptobrevin PF00957.16 gi|345006290|ref|YP_004809143.1| - 0.46 10.1 2.2 0.84 9.2 1.5 1.3 1 0 0 1 1 1 0 Synaptobrevin ADIP PF11559.3 gi|345006290|ref|YP_004809143.1| - 0.56 10.0 7.1 1.2 9.0 4.9 1.5 1 0 0 1 1 1 0 Afadin- and alpha -actinin-Binding DUF2205 PF10224.4 gi|345006290|ref|YP_004809143.1| - 0.6 9.7 6.0 1.2 8.7 4.2 1.4 1 0 0 1 1 1 0 Predicted coiled-coil protein (DUF2205) TBPIP PF07106.8 gi|345006290|ref|YP_004809143.1| - 0.73 9.3 5.0 0.41 10.1 2.0 1.7 2 0 0 2 2 1 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) EMP24_GP25L PF01105.19 gi|345006290|ref|YP_004809143.1| - 0.82 9.3 6.0 6.1 6.5 2.9 2.1 2 0 0 2 2 2 0 emp24/gp25L/p24 family/GOLD Prefoldin_2 PF01920.15 gi|345006290|ref|YP_004809143.1| - 0.85 9.4 8.1 1.6 8.4 5.6 1.4 1 0 0 1 1 1 0 Prefoldin subunit bZIP_2 PF07716.10 gi|345006290|ref|YP_004809143.1| - 0.86 9.4 14.5 0.8 9.5 6.4 2.6 1 1 1 2 2 2 0 Basic region leucine zipper APG6 PF04111.7 gi|345006290|ref|YP_004809143.1| - 2.2 7.2 7.1 3.5 6.5 4.9 1.2 1 0 0 1 1 1 0 Autophagy protein Apg6 NYD-SP28_assoc PF14775.1 gi|345006290|ref|YP_004809143.1| - 3.1 7.5 9.2 5.8 6.6 5.2 2.3 1 1 1 2 2 2 0 Sperm tail C-terminal domain TSC22 PF01166.13 gi|345006290|ref|YP_004809143.1| - 3.5 7.6 14.5 28 4.7 8.0 3.2 2 1 0 2 2 2 0 TSC-22/dip/bun family Fst_toxin PF13955.1 gi|345006291|ref|YP_004809144.1| - 0.11 12.2 4.1 0.27 10.9 0.2 2.4 2 0 0 2 2 2 0 Toxin Fst, type I toxin-antitoxin system DUF2142 PF09913.4 gi|345006291|ref|YP_004809144.1| - 0.16 10.6 3.4 0.16 10.5 2.4 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2142) YrhC PF14143.1 gi|345006291|ref|YP_004809144.1| - 0.33 10.9 4.5 0.64 10.0 3.1 1.4 1 1 0 1 1 1 0 YrhC-like protein DUF2207 PF09972.4 gi|345006291|ref|YP_004809144.1| - 0.4 9.2 3.7 0.45 9.0 2.5 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) NfeD PF01957.13 gi|345006291|ref|YP_004809144.1| - 0.44 10.6 4.8 0.52 10.4 3.4 1.0 1 0 0 1 1 1 0 NfeD-like C-terminal, partner-binding SdpI PF13630.1 gi|345006291|ref|YP_004809144.1| - 0.62 9.8 4.3 0.8 9.4 3.0 1.1 1 0 0 1 1 1 0 SdpI/YhfL protein family Tetraspannin PF00335.15 gi|345006291|ref|YP_004809144.1| - 0.65 9.2 3.5 0.73 9.0 2.4 1.1 1 0 0 1 1 1 0 Tetraspanin family DUF2975 PF11188.3 gi|345006291|ref|YP_004809144.1| - 0.98 9.1 5.1 1.1 8.9 3.5 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF2975) DUF4231 PF14015.1 gi|345006291|ref|YP_004809144.1| - 1.3 9.0 5.0 1.4 8.9 3.5 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF4231) DUF3317 PF11779.3 gi|345006291|ref|YP_004809144.1| - 1.6 8.1 3.9 5.9 6.3 0.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3317) Pox_A14 PF05767.7 gi|345006291|ref|YP_004809144.1| - 2.6 8.0 4.9 5.3 7.0 3.4 1.6 1 1 0 1 1 1 0 Poxvirus virion envelope protein A14 ATP-synt_8 PF00895.15 gi|345006291|ref|YP_004809144.1| - 8.7 6.6 6.3 19 5.5 1.9 2.0 1 1 1 2 2 2 0 ATP synthase protein 8 TcpE PF12648.2 gi|345006292|ref|YP_004809145.1| - 2.3 8.4 6.6 0.75 9.9 1.0 2.0 1 1 1 2 2 2 0 TcpE family MFS_1 PF07690.11 gi|345006293|ref|YP_004809146.1| - 4.1e-10 38.9 53.8 4.1e-10 38.9 37.3 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily HAD_2 PF13419.1 gi|345006294|ref|YP_004809147.1| - 6.2e-18 65.6 0.7 7.9e-18 65.2 0.5 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|345006294|ref|YP_004809147.1| - 2.3e-12 46.4 0.0 5.5e-12 45.2 0.0 1.6 1 0 0 1 1 1 1 HAD-hyrolase-like Hydrolase PF00702.21 gi|345006294|ref|YP_004809147.1| - 1.5e-10 41.9 0.2 6.4e-10 39.8 0.1 1.8 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|345006294|ref|YP_004809147.1| - 0.00027 21.1 0.1 0.00037 20.7 0.1 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.1 gi|345006294|ref|YP_004809147.1| - 0.0059 16.4 0.1 0.072 12.9 0.0 2.4 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Put_Phosphatase PF06888.7 gi|345006294|ref|YP_004809147.1| - 0.012 14.8 0.1 0.041 13.0 0.0 1.8 3 0 0 3 3 3 0 Putative Phosphatase PDT PF00800.13 gi|345006295|ref|YP_004809148.1| - 2.4e-50 170.5 0.1 3e-50 170.2 0.1 1.1 1 0 0 1 1 1 1 Prephenate dehydratase ACT PF01842.20 gi|345006295|ref|YP_004809148.1| - 8.3e-07 28.3 0.0 1.1e-05 24.8 0.0 2.6 3 0 0 3 3 3 1 ACT domain PAS_9 PF13426.1 gi|345006296|ref|YP_004809149.1| - 3.6e-52 175.1 0.2 1.4e-17 63.9 0.0 3.8 3 0 0 3 3 3 3 PAS domain PAS_4 PF08448.5 gi|345006296|ref|YP_004809149.1| - 4.7e-35 119.9 6.7 6e-13 48.7 0.0 4.2 4 0 0 4 4 4 3 PAS fold PAS PF00989.19 gi|345006296|ref|YP_004809149.1| - 8.4e-33 112.5 0.1 1.9e-12 46.9 0.0 3.6 3 0 0 3 3 3 3 PAS fold PAS_3 PF08447.6 gi|345006296|ref|YP_004809149.1| - 5.8e-24 84.0 1.9 4.2e-08 33.1 0.0 4.1 4 0 0 4 4 4 3 PAS fold Response_reg PF00072.19 gi|345006296|ref|YP_004809149.1| - 1.3e-18 67.0 0.0 4.5e-18 65.2 0.0 2.0 1 0 0 1 1 1 1 Response regulator receiver domain GAF_2 PF13185.1 gi|345006296|ref|YP_004809149.1| - 7.7e-12 45.9 0.1 2.7e-11 44.1 0.1 2.0 1 0 0 1 1 1 1 GAF domain GAF_3 PF13492.1 gi|345006296|ref|YP_004809149.1| - 3.1e-11 43.4 0.3 1.1e-10 41.7 0.0 2.2 3 0 0 3 3 2 1 GAF domain PAS_8 PF13188.1 gi|345006296|ref|YP_004809149.1| - 1.2e-10 40.8 0.0 0.0012 18.5 0.0 3.7 3 0 0 3 3 3 2 PAS domain HATPase_c PF02518.21 gi|345006296|ref|YP_004809149.1| - 5.1e-10 39.0 3.1 8.6e-09 35.1 0.8 2.9 2 1 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.20 gi|345006296|ref|YP_004809149.1| - 1.5e-09 37.7 2.4 1.5e-09 37.7 1.7 3.1 4 0 0 4 4 3 1 His Kinase A (phospho-acceptor) domain PAS_7 PF12860.2 gi|345006296|ref|YP_004809149.1| - 1.2e-05 25.2 0.5 2 8.4 0.0 5.5 4 1 1 5 5 5 2 PAS fold GAF PF01590.21 gi|345006296|ref|YP_004809149.1| - 9.6e-05 22.5 0.0 0.00024 21.2 0.0 1.8 1 0 0 1 1 1 1 GAF domain OKR_DC_1_N PF03709.10 gi|345006296|ref|YP_004809149.1| - 0.0032 17.4 0.1 0.026 14.5 0.0 2.4 2 0 0 2 2 2 1 Orn/Lys/Arg decarboxylase, N-terminal domain PAS_11 PF14598.1 gi|345006296|ref|YP_004809149.1| - 0.013 15.4 0.0 6.2 6.8 0.0 3.3 3 0 0 3 3 3 0 PAS domain DUF2930 PF11152.3 gi|345006296|ref|YP_004809149.1| - 0.03 13.4 0.0 0.051 12.7 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2930) Fucose_iso_C PF02952.12 gi|345006296|ref|YP_004809149.1| - 0.069 12.6 0.0 0.18 11.3 0.0 1.6 1 0 0 1 1 1 0 L-fucose isomerase, C-terminal domain HSP20 PF00011.16 gi|345006297|ref|YP_004809150.1| - 6.1e-23 80.6 0.1 7.5e-23 80.3 0.0 1.1 1 0 0 1 1 1 1 Hsp20/alpha crystallin family HSP20 PF00011.16 gi|345006298|ref|YP_004809151.1| - 5.3e-20 71.1 0.1 6.5e-20 70.8 0.0 1.1 1 0 0 1 1 1 1 Hsp20/alpha crystallin family GvpH PF05455.6 gi|345006298|ref|YP_004809151.1| - 0.00035 20.2 4.6 0.00051 19.7 2.7 1.6 1 1 0 1 1 1 1 GvpH PIH1 PF08190.7 gi|345006298|ref|YP_004809151.1| - 0.014 14.8 0.0 0.016 14.6 0.0 1.0 1 0 0 1 1 1 0 pre-RNA processing PIH1/Nop17 MASE1 PF05231.9 gi|345006299|ref|YP_004809152.1| - 0.59 9.0 13.3 1.6 7.7 1.2 2.0 1 1 1 2 2 2 0 MASE1 DUF131 PF01998.12 gi|345006300|ref|YP_004809153.1| - 2.9 7.2 5.5 4 6.8 3.8 1.2 1 0 0 1 1 1 0 Protein of unknown function DUF131 tRNA-synt_1 PF00133.17 gi|345006301|ref|YP_004809154.1| - 2.4e-53 181.0 0.0 7.7e-40 136.4 0.0 3.2 2 1 0 2 2 2 2 tRNA synthetases class I (I, L, M and V) tRNA-synt_1g PF09334.6 gi|345006301|ref|YP_004809154.1| - 2.3e-25 89.0 1.0 4.2e-11 42.1 0.0 3.3 2 1 0 2 2 2 2 tRNA synthetases class I (M) Anticodon_1 PF08264.8 gi|345006301|ref|YP_004809154.1| - 1.2e-17 64.1 0.1 2.4e-17 63.1 0.0 1.5 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1_2 PF13603.1 gi|345006301|ref|YP_004809154.1| - 1.5e-08 34.1 0.0 3e-08 33.1 0.0 1.4 1 0 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1e PF01406.14 gi|345006301|ref|YP_004809154.1| - 5.7e-05 22.3 0.0 0.018 14.1 0.0 2.3 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1f PF01921.13 gi|345006301|ref|YP_004809154.1| - 0.0016 17.1 0.0 0.031 12.9 0.0 2.2 2 0 0 2 2 2 1 tRNA synthetases class I (K) tRNA-synt_1c PF00749.16 gi|345006301|ref|YP_004809154.1| - 0.18 10.4 0.7 0.31 9.6 0.1 1.7 2 0 0 2 2 2 0 tRNA synthetases class I (E and Q), catalytic domain CitMHS PF03600.11 gi|345006302|ref|YP_004809155.1| - 6e-42 143.4 0.0 1.1e-40 139.2 0.0 2.0 1 1 1 2 2 2 2 Citrate transporter TrkA_C PF02080.16 gi|345006302|ref|YP_004809155.1| - 3.2e-23 81.0 2.7 1e-12 47.4 0.2 2.7 2 0 0 2 2 2 2 TrkA-C domain Na_sulph_symp PF00939.14 gi|345006302|ref|YP_004809155.1| - 2.1e-21 76.3 38.5 2.4e-12 46.4 11.9 2.8 2 1 0 2 2 2 2 Sodium:sulfate symporter transmembrane region MatC_N PF07158.6 gi|345006302|ref|YP_004809155.1| - 0.24 11.2 30.2 0.013 15.3 3.3 2.4 2 0 0 2 2 2 0 Dicarboxylate carrier protein MatC N-terminus OCD_Mu_crystall PF02423.10 gi|345006303|ref|YP_004809156.1| - 2.6e-89 299.0 0.3 2.9e-89 298.9 0.2 1.0 1 0 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family DUF4298 PF14131.1 gi|345006303|ref|YP_004809156.1| - 0.024 14.5 0.4 2.5 8.0 0.0 3.0 3 1 1 4 4 4 0 Domain of unknown function (DUF4298) DeoC PF01791.4 gi|345006304|ref|YP_004809157.1| - 6.4e-43 146.7 0.1 8.2e-43 146.3 0.1 1.1 1 0 0 1 1 1 1 DeoC/LacD family aldolase DUF561 PF04481.7 gi|345006304|ref|YP_004809157.1| - 0.11 11.4 0.1 0.26 10.2 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF561) Trp_syntA PF00290.15 gi|345006305|ref|YP_004809158.1| - 1.5e-86 289.1 0.0 2.1e-86 288.6 0.0 1.1 1 0 0 1 1 1 1 Tryptophan synthase alpha chain PcrB PF01884.12 gi|345006305|ref|YP_004809158.1| - 6.8e-06 25.4 0.8 9.4e-05 21.7 0.4 2.2 2 0 0 2 2 2 1 PcrB family His_biosynth PF00977.16 gi|345006305|ref|YP_004809158.1| - 4.3e-05 22.8 0.6 0.00012 21.3 0.6 1.5 2 0 0 2 2 2 1 Histidine biosynthesis protein ThiG PF05690.9 gi|345006305|ref|YP_004809158.1| - 0.0042 16.1 0.4 0.0067 15.5 0.3 1.3 1 0 0 1 1 1 1 Thiazole biosynthesis protein ThiG PhnG PF06754.7 gi|345006305|ref|YP_004809158.1| - 0.025 14.2 0.6 0.043 13.4 0.4 1.4 1 1 0 1 1 1 0 Phosphonate metabolism protein PhnG AP_endonuc_2 PF01261.19 gi|345006305|ref|YP_004809158.1| - 0.069 12.4 0.0 0.76 9.0 0.0 2.3 2 1 0 2 2 2 0 Xylose isomerase-like TIM barrel DHO_dh PF01180.16 gi|345006305|ref|YP_004809158.1| - 0.078 11.9 0.1 0.11 11.3 0.0 1.1 1 0 0 1 1 1 0 Dihydroorotate dehydrogenase PALP PF00291.20 gi|345006306|ref|YP_004809159.1| - 1.7e-36 126.0 1.4 2.2e-36 125.6 1.0 1.2 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme IGPS PF00218.16 gi|345006307|ref|YP_004809160.1| - 1.6e-69 233.8 0.0 1.9e-69 233.5 0.0 1.0 1 0 0 1 1 1 1 Indole-3-glycerol phosphate synthase NanE PF04131.9 gi|345006307|ref|YP_004809160.1| - 2.6e-06 26.5 0.3 6.2e-05 22.0 0.2 2.4 1 1 0 1 1 1 1 Putative N-acetylmannosamine-6-phosphate epimerase QRPTase_C PF01729.14 gi|345006307|ref|YP_004809160.1| - 6.2e-05 22.5 0.2 0.00016 21.2 0.0 1.7 1 1 1 2 2 2 1 Quinolinate phosphoribosyl transferase, C-terminal domain FMN_dh PF01070.13 gi|345006307|ref|YP_004809160.1| - 0.00021 20.2 0.6 0.00083 18.3 0.3 1.8 2 0 0 2 2 2 1 FMN-dependent dehydrogenase DeoC PF01791.4 gi|345006307|ref|YP_004809160.1| - 0.0046 16.2 0.6 0.96 8.6 0.1 3.0 1 1 2 3 3 3 1 DeoC/LacD family aldolase His_biosynth PF00977.16 gi|345006307|ref|YP_004809160.1| - 0.0075 15.5 0.0 0.064 12.5 0.0 2.3 2 2 0 2 2 2 1 Histidine biosynthesis protein PcrB PF01884.12 gi|345006307|ref|YP_004809160.1| - 0.036 13.3 0.0 0.066 12.4 0.0 1.4 1 0 0 1 1 1 0 PcrB family PA PF02225.17 gi|345006307|ref|YP_004809160.1| - 0.065 12.9 0.1 0.34 10.6 0.0 2.4 2 2 1 3 3 3 0 PA domain ThiG PF05690.9 gi|345006307|ref|YP_004809160.1| - 0.067 12.2 4.1 0.034 13.2 0.3 2.4 1 1 3 4 4 4 0 Thiazole biosynthesis protein ThiG NMO PF03060.10 gi|345006307|ref|YP_004809160.1| - 0.079 12.0 1.0 0.14 11.2 0.7 1.4 1 1 0 1 1 1 0 Nitronate monooxygenase DNA_binding_1 PF01035.15 gi|345006308|ref|YP_004809161.1| - 3.3e-12 45.9 0.0 4.8e-12 45.4 0.0 1.3 1 0 0 1 1 1 1 6-O-methylguanine DNA methyltransferase, DNA binding domain MerC PF03203.9 gi|345006309|ref|YP_004809162.1| - 0.38 11.1 4.6 0.79 10.1 3.2 1.7 1 1 0 1 1 1 0 MerC mercury resistance protein Asn_synthase PF00733.16 gi|345006310|ref|YP_004809163.1| - 1.2e-11 44.5 0.7 2.1e-11 43.8 0.5 1.4 1 1 0 1 1 1 1 Asparagine synthase tRNA_Me_trans PF03054.11 gi|345006310|ref|YP_004809163.1| - 7.1e-10 37.9 0.1 6.1e-07 28.3 0.0 2.2 2 0 0 2 2 2 2 tRNA methyl transferase NAD_synthase PF02540.12 gi|345006310|ref|YP_004809163.1| - 2.4e-09 36.4 0.0 3.6e-09 35.8 0.0 1.2 1 0 0 1 1 1 1 NAD synthase QueC PF06508.8 gi|345006310|ref|YP_004809163.1| - 5.3e-06 25.8 0.0 0.00027 20.2 0.0 2.3 2 0 0 2 2 2 1 Queuosine biosynthesis protein QueC ATP_bind_3 PF01171.15 gi|345006310|ref|YP_004809163.1| - 0.00031 20.2 0.0 0.0011 18.4 0.0 1.8 2 0 0 2 2 2 1 PP-loop family Arginosuc_synth PF00764.14 gi|345006310|ref|YP_004809163.1| - 0.004 16.2 0.0 0.0058 15.7 0.0 1.2 1 0 0 1 1 1 1 Arginosuccinate synthase DUF208 PF02677.9 gi|345006310|ref|YP_004809163.1| - 0.16 11.7 0.0 0.29 10.8 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized BCR, COG1636 MutS_V PF00488.16 gi|345006311|ref|YP_004809164.1| - 3.3e-08 33.2 0.0 5.7e-08 32.4 0.0 1.3 1 0 0 1 1 1 1 MutS domain V HHH_5 PF14520.1 gi|345006311|ref|YP_004809164.1| - 0.002 18.2 4.0 0.0069 16.5 1.8 2.7 2 0 0 2 2 2 1 Helix-hairpin-helix domain HHH PF00633.18 gi|345006311|ref|YP_004809164.1| - 0.012 15.3 2.9 0.14 11.9 0.0 3.4 3 0 0 3 3 3 0 Helix-hairpin-helix motif Metallophos_2 PF12850.2 gi|345006312|ref|YP_004809165.1| - 1.4e-22 80.2 0.2 1.7e-22 79.9 0.2 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|345006312|ref|YP_004809165.1| - 1.5e-07 30.9 0.0 0.0035 16.7 0.0 2.2 1 1 1 2 2 2 2 Calcineurin-like phosphoesterase RPEL PF02755.10 gi|345006312|ref|YP_004809165.1| - 0.18 11.1 0.3 0.28 10.5 0.2 1.3 1 0 0 1 1 1 0 RPEL repeat Cation_efflux PF01545.16 gi|345006313|ref|YP_004809166.1| - 9.4e-45 152.8 0.9 1.1e-44 152.7 0.6 1.0 1 0 0 1 1 1 1 Cation efflux family Zn-ribbon_8 PF09723.5 gi|345006314|ref|YP_004809167.1| - 0.12 12.3 0.4 0.25 11.3 0.3 1.5 1 0 0 1 1 1 0 Zinc ribbon domain MFS_1 PF07690.11 gi|345006315|ref|YP_004809168.1| - 1.4e-45 155.5 67.1 2.2e-42 145.0 32.9 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_2 PF13347.1 gi|345006315|ref|YP_004809168.1| - 1.4e-13 50.0 13.5 3.2e-07 29.1 5.0 2.2 1 1 1 2 2 2 2 MFS/sugar transport protein ATG22 PF11700.3 gi|345006315|ref|YP_004809168.1| - 5e-07 28.5 13.4 1.6e-06 26.9 9.3 1.7 1 1 0 1 1 1 1 Vacuole effluxer Atg22 like MFS_1_like PF12832.2 gi|345006315|ref|YP_004809168.1| - 0.0062 16.3 0.1 0.03 14.1 0.1 2.2 1 0 0 1 1 1 1 MFS_1 like family PCNA_N PF00705.13 gi|345006316|ref|YP_004809169.1| - 1e-11 44.4 1.1 2.9e-11 42.9 0.2 1.9 2 0 0 2 2 2 1 Proliferating cell nuclear antigen, N-terminal domain PCNA_C PF02747.10 gi|345006316|ref|YP_004809169.1| - 4.8e-06 26.5 0.0 2.2e-05 24.3 0.0 2.1 2 1 0 2 2 2 1 Proliferating cell nuclear antigen, C-terminal domain DNA_pol3_beta_3 PF02768.10 gi|345006316|ref|YP_004809169.1| - 0.12 11.8 1.3 1 8.9 0.2 2.4 2 2 0 2 2 2 0 DNA polymerase III beta subunit, C-terminal domain Rad9 PF04139.8 gi|345006316|ref|YP_004809169.1| - 0.16 11.0 0.0 0.26 10.3 0.0 1.3 1 0 0 1 1 1 0 Rad9 Mrr_cat PF04471.7 gi|345006317|ref|YP_004809170.1| - 7.6e-20 70.8 0.0 1.3e-19 70.0 0.0 1.4 1 0 0 1 1 1 1 Restriction endonuclease DUF2034 PF10356.4 gi|345006317|ref|YP_004809170.1| - 0.071 12.2 0.0 0.23 10.6 0.0 1.7 1 1 1 2 2 2 0 Protein of unknown function (DUF2034) Peptidase_M29 PF02073.10 gi|345006318|ref|YP_004809171.1| - 3e-105 352.2 0.1 3.4e-105 352.0 0.1 1.0 1 0 0 1 1 1 1 Thermophilic metalloprotease (M29) AsnC_trans_reg PF01037.16 gi|345006319|ref|YP_004809172.1| - 5e-11 42.1 0.3 8.2e-11 41.4 0.2 1.4 1 0 0 1 1 1 1 AsnC family HTH_24 PF13412.1 gi|345006319|ref|YP_004809172.1| - 1.4e-10 40.4 0.8 2.4e-10 39.6 0.1 1.8 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.1 gi|345006319|ref|YP_004809172.1| - 2e-08 33.6 0.6 2e-08 33.6 0.4 1.8 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain HTH_5 PF01022.15 gi|345006319|ref|YP_004809172.1| - 4.1e-06 26.3 0.0 6.8e-06 25.6 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|345006319|ref|YP_004809172.1| - 9e-06 25.3 0.0 2.2e-05 24.1 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.7 gi|345006319|ref|YP_004809172.1| - 2.6e-05 23.7 0.0 5.1e-05 22.8 0.0 1.5 1 0 0 1 1 1 1 HTH domain TrmB PF01978.14 gi|345006319|ref|YP_004809172.1| - 0.00014 21.5 0.0 0.00026 20.6 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB GntR PF00392.16 gi|345006319|ref|YP_004809172.1| - 0.00038 19.8 0.1 0.00079 18.8 0.1 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_28 PF13518.1 gi|345006319|ref|YP_004809172.1| - 0.00044 20.1 0.0 0.00088 19.2 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain MarR PF01047.17 gi|345006319|ref|YP_004809172.1| - 0.00057 19.5 0.0 0.0022 17.6 0.0 1.9 2 0 0 2 2 2 1 MarR family HTH_DeoR PF08220.7 gi|345006319|ref|YP_004809172.1| - 0.0011 18.4 0.0 0.0025 17.3 0.0 1.6 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain MarR_2 PF12802.2 gi|345006319|ref|YP_004809172.1| - 0.0012 18.4 0.0 0.0034 17.0 0.0 1.7 2 0 0 2 2 2 1 MarR family HTH_10 PF04967.7 gi|345006319|ref|YP_004809172.1| - 0.003 17.1 0.0 0.0059 16.1 0.0 1.4 1 0 0 1 1 1 1 HTH DNA binding domain HTH_IclR PF09339.5 gi|345006319|ref|YP_004809172.1| - 0.0042 16.6 0.1 0.0089 15.5 0.1 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_38 PF13936.1 gi|345006319|ref|YP_004809172.1| - 0.007 15.8 0.0 0.014 14.9 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.1 gi|345006319|ref|YP_004809172.1| - 0.0078 15.8 0.0 0.015 14.9 0.0 1.4 1 0 0 1 1 1 1 Homeodomain-like domain HTH_27 PF13463.1 gi|345006319|ref|YP_004809172.1| - 0.027 14.7 0.3 0.12 12.7 0.0 2.1 3 0 0 3 3 2 0 Winged helix DNA-binding domain HTH_Crp_2 PF13545.1 gi|345006319|ref|YP_004809172.1| - 0.035 13.8 0.0 0.064 13.0 0.0 1.5 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_34 PF13601.1 gi|345006319|ref|YP_004809172.1| - 0.075 13.0 0.0 0.14 12.1 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain Mga PF05043.8 gi|345006319|ref|YP_004809172.1| - 0.12 12.6 0.0 0.31 11.3 0.0 1.6 2 0 0 2 2 1 0 Mga helix-turn-helix domain Gln-synt_C PF00120.19 gi|345006320|ref|YP_004809173.1| - 1.5e-103 345.4 0.1 2e-103 345.0 0.0 1.2 1 0 0 1 1 1 1 Glutamine synthetase, catalytic domain Gln-synt_N PF03951.14 gi|345006320|ref|YP_004809173.1| - 1.1e-29 101.8 0.4 5.6e-29 99.5 0.0 2.2 2 0 0 2 2 2 1 Glutamine synthetase, beta-Grasp domain PAP2 PF01569.16 gi|345006321|ref|YP_004809174.1| - 1.9e-19 69.5 4.0 1.9e-19 69.5 2.8 2.3 3 1 0 3 3 3 1 PAP2 superfamily PAP2_3 PF14378.1 gi|345006321|ref|YP_004809174.1| - 0.0066 15.9 3.4 0.0066 15.9 2.3 1.9 2 1 0 2 2 2 1 PAP2 superfamily Got1 PF04178.7 gi|345006321|ref|YP_004809174.1| - 4.4 7.4 8.2 3 7.9 0.2 3.3 3 1 0 3 3 3 0 Got1/Sft2-like family Virul_fac_BrkB PF03631.10 gi|345006322|ref|YP_004809175.1| - 3.8e-42 144.4 32.7 3.8e-42 144.4 22.7 1.9 2 0 0 2 2 2 1 Virulence factor BrkB ABC2_membrane_2 PF12679.2 gi|345006323|ref|YP_004809176.1| - 4.9e-14 51.8 5.9 6e-14 51.5 4.1 1.0 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane PF01061.19 gi|345006323|ref|YP_004809176.1| - 0.55 9.3 8.9 1.5 7.9 3.3 2.1 2 0 0 2 2 2 0 ABC-2 type transporter Ferritin_2 PF13668.1 gi|345006324|ref|YP_004809177.1| - 8.1e-38 129.4 1.8 1.5e-37 128.6 1.3 1.4 1 0 0 1 1 1 1 Ferritin-like domain NESP55 PF06390.7 gi|345006324|ref|YP_004809177.1| - 0.54 9.5 13.0 0.92 8.8 9.0 1.4 1 0 0 1 1 1 0 Neuroendocrine-specific golgi protein P55 (NESP55) DREPP PF05558.7 gi|345006324|ref|YP_004809177.1| - 1.1 9.0 11.9 2 8.1 8.2 1.4 1 0 0 1 1 1 0 DREPP plasma membrane polypeptide TRM PF02005.11 gi|345006325|ref|YP_004809178.1| - 6.3e-94 314.9 0.0 6.9e-94 314.8 0.0 1.0 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase Methyltransf_26 PF13659.1 gi|345006325|ref|YP_004809178.1| - 4.2e-06 26.7 4.1 8.6e-06 25.7 2.3 1.9 2 1 0 2 2 2 1 Methyltransferase domain PrmA PF06325.8 gi|345006325|ref|YP_004809178.1| - 5.2e-05 22.5 0.3 7.7e-05 21.9 0.2 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) MTS PF05175.9 gi|345006325|ref|YP_004809178.1| - 0.0011 18.4 0.3 0.0036 16.7 0.2 1.8 1 1 1 2 2 2 1 Methyltransferase small domain Met_10 PF02475.11 gi|345006325|ref|YP_004809178.1| - 0.0015 18.1 0.0 0.0021 17.6 0.0 1.3 1 0 0 1 1 1 1 Met-10+ like-protein Zn-ribbon_8 PF09723.5 gi|345006325|ref|YP_004809178.1| - 0.0023 17.8 1.2 0.0054 16.6 0.9 1.6 1 0 0 1 1 1 1 Zinc ribbon domain Methyltransf_18 PF12847.2 gi|345006325|ref|YP_004809178.1| - 0.012 16.1 0.0 0.031 14.8 0.0 1.7 1 0 0 1 1 1 0 Methyltransferase domain HypA PF01155.14 gi|345006325|ref|YP_004809178.1| - 0.041 13.5 0.0 0.081 12.6 0.0 1.4 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family AIG2 PF06094.7 gi|345006326|ref|YP_004809179.1| - 1.8e-08 34.7 0.2 1.8e-08 34.7 0.1 1.4 2 0 0 2 2 2 1 AIG2-like family AIG2_2 PF13772.1 gi|345006326|ref|YP_004809179.1| - 0.00028 20.9 0.0 0.00043 20.3 0.0 1.3 1 0 0 1 1 1 1 AIG2-like family PALP PF00291.20 gi|345006327|ref|YP_004809180.1| - 1.9e-79 267.0 6.6 2.4e-79 266.7 4.6 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme ACT_4 PF13291.1 gi|345006327|ref|YP_004809180.1| - 2.5e-05 24.5 0.1 8.2e-05 22.8 0.1 1.8 1 0 0 1 1 1 1 ACT domain ACT PF01842.20 gi|345006327|ref|YP_004809180.1| - 0.0031 16.9 0.4 0.01 15.2 0.1 2.1 2 0 0 2 2 2 1 ACT domain DegT_DnrJ_EryC1 PF01041.12 gi|345006327|ref|YP_004809180.1| - 0.0061 15.6 0.1 0.043 12.8 0.0 2.0 2 0 0 2 2 2 1 DegT/DnrJ/EryC1/StrS aminotransferase family ACT_6 PF13740.1 gi|345006327|ref|YP_004809180.1| - 0.054 13.2 0.0 0.18 11.5 0.0 1.9 1 0 0 1 1 1 0 ACT domain Ribonuc_L-PSP PF01042.16 gi|345006328|ref|YP_004809181.1| - 5.4e-39 132.6 0.0 6e-39 132.5 0.0 1.0 1 0 0 1 1 1 1 Endoribonuclease L-PSP DUF2776 PF10951.3 gi|345006329|ref|YP_004809182.1| - 0.21 10.6 3.0 0.23 10.4 2.1 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF2776) DUF2142 PF09913.4 gi|345006329|ref|YP_004809182.1| - 0.59 8.7 4.6 0.67 8.5 3.2 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2142) MacB_PCD PF12704.2 gi|345006329|ref|YP_004809182.1| - 1.2 8.6 3.9 2 7.9 2.7 1.3 1 0 0 1 1 1 0 MacB-like periplasmic core domain DUF1469 PF07332.6 gi|345006329|ref|YP_004809182.1| - 2.7 7.7 14.1 3.4 7.4 9.7 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1469) IncA PF04156.9 gi|345006329|ref|YP_004809182.1| - 6.3 6.3 8.1 6.6 6.2 5.6 1.1 1 0 0 1 1 1 0 IncA protein HTH_5 PF01022.15 gi|345006330|ref|YP_004809183.1| - 0.12 12.0 0.1 12 5.6 0.0 2.6 2 1 0 2 2 2 0 Bacterial regulatory protein, arsR family HTH_10 PF04967.7 gi|345006331|ref|YP_004809184.1| - 7.8e-17 60.6 0.1 1.5e-16 59.7 0.0 1.5 1 0 0 1 1 1 1 HTH DNA binding domain Sigma70_r4 PF04545.11 gi|345006331|ref|YP_004809184.1| - 7.8e-06 25.1 0.2 1.7e-05 24.0 0.1 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_AsnC-type PF13404.1 gi|345006331|ref|YP_004809184.1| - 0.008 15.7 0.1 0.014 14.9 0.1 1.3 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.1 gi|345006331|ref|YP_004809184.1| - 0.015 14.7 0.0 0.026 13.9 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|345006331|ref|YP_004809184.1| - 0.018 14.6 0.0 0.034 13.8 0.0 1.5 1 0 0 1 1 1 0 MarR family Sigma70_r4_2 PF08281.7 gi|345006331|ref|YP_004809184.1| - 0.1 12.0 0.0 0.48 9.9 0.0 2.0 2 0 0 2 2 2 0 Sigma-70, region 4 Mem_trans PF03547.13 gi|345006333|ref|YP_004809186.1| - 1.8e-25 89.0 25.4 4.7e-14 51.4 9.5 2.1 1 1 1 2 2 2 2 Membrane transport protein MatE PF01554.13 gi|345006334|ref|YP_004809187.1| - 6.7e-61 204.6 29.2 1.3e-31 109.4 7.6 2.4 2 0 0 2 2 2 2 MatE Polysacc_synt_C PF14667.1 gi|345006334|ref|YP_004809187.1| - 3.8e-12 46.2 15.1 5.7e-10 39.1 1.8 4.5 4 2 1 5 5 5 2 Polysaccharide biosynthesis C-terminal domain PNP_UDP_1 PF01048.15 gi|345006335|ref|YP_004809188.1| - 1.6e-41 141.8 0.1 1.8e-41 141.6 0.1 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily ScpA_ScpB PF02616.9 gi|345006336|ref|YP_004809189.1| - 8.5e-22 77.9 0.0 6.2e-21 75.0 0.0 2.1 1 1 0 1 1 1 1 ScpA/B protein SMC_N PF02463.14 gi|345006337|ref|YP_004809190.1| - 4.3e-59 199.4 14.0 7.1e-59 198.7 9.7 1.4 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain SMC_hinge PF06470.8 gi|345006337|ref|YP_004809190.1| - 6.1e-29 100.4 0.1 4.7e-28 97.5 0.0 2.6 3 0 0 3 3 2 1 SMC proteins Flexible Hinge Domain AAA_21 PF13304.1 gi|345006337|ref|YP_004809190.1| - 1.2e-15 58.2 5.9 8.2e-09 35.8 0.0 3.4 3 0 0 3 3 3 2 AAA domain Reo_sigmaC PF04582.7 gi|345006337|ref|YP_004809190.1| - 7.3e-14 51.6 32.7 8.3e-05 21.9 1.7 5.4 2 2 3 5 5 5 5 Reovirus sigma C capsid protein AAA_13 PF13166.1 gi|345006337|ref|YP_004809190.1| - 7.6e-12 44.5 86.9 9.3e-06 24.4 6.7 6.2 3 2 3 6 6 6 5 AAA domain IncA PF04156.9 gi|345006337|ref|YP_004809190.1| - 5.1e-10 39.2 141.6 0.0016 18.0 13.2 7.6 2 2 5 7 7 7 4 IncA protein MscS_porin PF12795.2 gi|345006337|ref|YP_004809190.1| - 1.1e-05 24.9 12.7 1.1e-05 24.9 8.8 6.3 2 2 4 6 6 5 2 Mechanosensitive ion channel porin domain EzrA PF06160.7 gi|345006337|ref|YP_004809190.1| - 1.2e-05 23.7 19.3 1.2e-05 23.7 13.4 6.1 2 2 2 4 4 3 2 Septation ring formation regulator, EzrA AAA_29 PF13555.1 gi|345006337|ref|YP_004809190.1| - 3e-05 23.4 0.0 7.5e-05 22.1 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain Fib_alpha PF08702.5 gi|345006337|ref|YP_004809190.1| - 5.1e-05 23.4 2.7 5.1e-05 23.4 1.9 6.7 3 2 4 7 7 7 1 Fibrinogen alpha/beta chain family NPV_P10 PF05531.7 gi|345006337|ref|YP_004809190.1| - 5.6e-05 23.2 49.4 0.0032 17.6 0.1 10.9 5 3 3 9 9 8 1 Nucleopolyhedrovirus P10 protein WEMBL PF05701.6 gi|345006337|ref|YP_004809190.1| - 7e-05 21.4 44.5 7e-05 21.4 30.8 5.4 2 2 2 4 4 4 2 Weak chloroplast movement under blue light CENP-F_leu_zip PF10473.4 gi|345006337|ref|YP_004809190.1| - 7.8e-05 22.5 140.0 0.00037 20.3 13.4 7.6 2 2 4 8 8 7 5 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DUF3584 PF12128.3 gi|345006337|ref|YP_004809190.1| - 0.00011 19.7 114.5 0.0028 15.1 22.6 4.3 2 2 2 4 4 4 3 Protein of unknown function (DUF3584) Spc7 PF08317.6 gi|345006337|ref|YP_004809190.1| - 0.00014 20.6 105.5 0.017 13.8 11.4 7.1 2 2 5 7 7 7 5 Spc7 kinetochore protein DUF812 PF05667.6 gi|345006337|ref|YP_004809190.1| - 0.00036 19.1 26.8 0.00036 19.1 18.6 5.7 2 2 2 4 4 4 2 Protein of unknown function (DUF812) AAA_15 PF13175.1 gi|345006337|ref|YP_004809190.1| - 0.00066 18.8 13.1 0.0023 17.0 0.0 3.8 4 1 0 4 4 3 2 AAA ATPase domain MAD PF05557.8 gi|345006337|ref|YP_004809190.1| - 0.00077 17.6 26.4 0.00077 17.6 18.3 5.1 2 2 2 5 5 5 1 Mitotic checkpoint protein Cast PF10174.4 gi|345006337|ref|YP_004809190.1| - 0.0013 16.9 56.8 0.0013 16.9 39.4 4.4 2 2 2 4 4 4 1 RIM-binding protein of the cytomatrix active zone ATG16 PF08614.6 gi|345006337|ref|YP_004809190.1| - 0.002 17.9 121.7 0.058 13.2 14.5 7.9 2 2 5 7 7 7 4 Autophagy protein 16 (ATG16) Laminin_II PF06009.7 gi|345006337|ref|YP_004809190.1| - 0.0023 17.6 66.4 0.033 13.9 5.2 8.3 4 2 3 8 8 8 2 Laminin Domain II Filament PF00038.16 gi|345006337|ref|YP_004809190.1| - 0.0026 17.3 119.3 0.028 13.8 12.9 6.1 2 2 3 6 6 5 4 Intermediate filament protein Tropomyosin PF00261.15 gi|345006337|ref|YP_004809190.1| - 0.0044 16.1 31.3 0.0044 16.1 21.7 5.9 2 2 2 4 4 1 1 Tropomyosin Baculo_PEP_C PF04513.7 gi|345006337|ref|YP_004809190.1| - 0.012 15.3 29.5 0.59 9.9 1.1 7.4 2 2 4 6 6 6 0 Baculovirus polyhedron envelope protein, PEP, C terminus AAA_23 PF13476.1 gi|345006337|ref|YP_004809190.1| - 0.017 15.4 111.3 0.09 13.0 34.5 7.2 2 2 0 2 2 1 0 AAA domain FliJ PF02050.11 gi|345006337|ref|YP_004809190.1| - 0.032 14.2 91.3 0.076 13.0 3.3 9.7 3 2 6 10 10 10 0 Flagellar FliJ protein BLOC1_2 PF10046.4 gi|345006337|ref|YP_004809190.1| - 0.033 14.3 0.3 0.033 14.3 0.2 10.0 3 2 6 10 10 10 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF1664 PF07889.7 gi|345006337|ref|YP_004809190.1| - 0.16 11.8 68.2 0.033 13.9 3.3 8.5 5 1 4 9 9 9 0 Protein of unknown function (DUF1664) GAS PF13851.1 gi|345006337|ref|YP_004809190.1| - 0.2 10.8 108.1 0.15 11.2 4.4 7.2 3 3 4 7 7 7 0 Growth-arrest specific micro-tubule binding Laminin_I PF06008.9 gi|345006337|ref|YP_004809190.1| - 0.49 9.6 87.6 0.32 10.2 5.6 7.4 2 2 3 5 5 5 0 Laminin Domain I APG6 PF04111.7 gi|345006337|ref|YP_004809190.1| - 1.1 8.1 125.5 0.17 10.9 12.1 6.7 2 2 5 7 7 7 0 Autophagy protein Apg6 DUF4200 PF13863.1 gi|345006337|ref|YP_004809190.1| - 1.9 8.4 135.5 0.027 14.4 8.3 11.8 4 3 8 12 12 12 0 Domain of unknown function (DUF4200) Atg14 PF10186.4 gi|345006337|ref|YP_004809190.1| - 2.6 6.9 92.4 0.11 11.3 7.4 6.2 2 2 6 8 8 8 0 UV radiation resistance protein and autophagy-related subunit 14 TPR_MLP1_2 PF07926.7 gi|345006337|ref|YP_004809190.1| - 6.8 6.4 117.6 1 9.0 12.9 8.4 3 2 4 7 7 7 0 TPR/MLP1/MLP2-like protein AAA_22 PF13401.1 gi|345006337|ref|YP_004809190.1| - 7.8 6.6 8.3 8.8 6.4 0.0 4.0 3 2 0 3 3 3 0 AAA domain FlaC_arch PF05377.6 gi|345006338|ref|YP_004809191.1| - 0.0029 17.4 1.7 0.0047 16.7 1.2 1.3 1 0 0 1 1 1 1 Flagella accessory protein C (FlaC) CENP-F_leu_zip PF10473.4 gi|345006338|ref|YP_004809191.1| - 0.0035 17.2 6.4 0.0035 17.2 4.4 1.5 1 1 0 1 1 1 1 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Tropomyosin PF00261.15 gi|345006338|ref|YP_004809191.1| - 0.005 15.9 3.7 0.005 15.9 2.5 2.2 2 0 0 2 2 2 1 Tropomyosin DUF4407 PF14362.1 gi|345006338|ref|YP_004809191.1| - 0.006 15.5 17.3 0.0066 15.4 12.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4407) SlyX PF04102.7 gi|345006338|ref|YP_004809191.1| - 0.018 15.3 11.2 0.075 13.4 7.7 2.2 1 1 0 1 1 1 0 SlyX GAS PF13851.1 gi|345006338|ref|YP_004809191.1| - 0.025 13.7 4.6 0.03 13.5 3.2 1.3 1 0 0 1 1 1 0 Growth-arrest specific micro-tubule binding DivIC PF04977.10 gi|345006338|ref|YP_004809191.1| - 0.027 13.9 2.5 0.027 13.9 1.7 2.4 2 1 1 3 3 2 0 Septum formation initiator Herpes_UL6 PF01763.11 gi|345006338|ref|YP_004809191.1| - 0.032 12.4 3.5 0.038 12.1 2.5 1.1 1 0 0 1 1 1 0 Herpesvirus UL6 like CENP-Q PF13094.1 gi|345006338|ref|YP_004809191.1| - 0.04 13.9 12.6 0.064 13.2 8.7 1.5 1 1 0 1 1 1 0 CENP-Q, a CENPA-CAD centromere complex subunit COG5 PF10392.4 gi|345006338|ref|YP_004809191.1| - 0.061 13.2 0.2 0.094 12.6 0.2 1.3 1 0 0 1 1 1 0 Golgi transport complex subunit 5 MtrB PF05440.7 gi|345006338|ref|YP_004809191.1| - 0.11 12.5 0.3 1.3 9.1 0.0 2.0 1 1 1 2 2 2 0 Tetrahydromethanopterin S-methyltransferase subunit B Cwf_Cwc_15 PF04889.7 gi|345006338|ref|YP_004809191.1| - 0.11 12.2 11.5 0.13 11.9 8.0 1.1 1 0 0 1 1 1 0 Cwf15/Cwc15 cell cycle control protein Gp58 PF07902.6 gi|345006338|ref|YP_004809191.1| - 0.11 10.6 2.3 0.13 10.5 1.6 1.1 1 0 0 1 1 1 0 gp58-like protein bZIP_1 PF00170.16 gi|345006338|ref|YP_004809191.1| - 0.17 11.8 2.3 0.33 10.9 1.6 1.5 1 0 0 1 1 1 0 bZIP transcription factor DUF3294 PF07957.6 gi|345006338|ref|YP_004809191.1| - 0.28 10.6 4.6 0.16 11.4 1.8 1.6 1 1 1 2 2 2 0 Protein of unknown function (DUF3294) DUF2730 PF10805.3 gi|345006338|ref|YP_004809191.1| - 0.29 10.8 1.6 0.43 10.3 1.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2730) TMF_DNA_bd PF12329.3 gi|345006338|ref|YP_004809191.1| - 0.31 10.8 8.4 0.044 13.5 2.4 2.0 2 0 0 2 2 2 0 TATA element modulatory factor 1 DNA binding DUF972 PF06156.8 gi|345006338|ref|YP_004809191.1| - 0.33 11.2 6.9 0.16 12.3 3.5 1.4 1 1 1 2 2 1 0 Protein of unknown function (DUF972) Fmp27_WPPW PF10359.4 gi|345006338|ref|YP_004809191.1| - 0.39 9.0 6.3 0.42 8.9 4.4 1.2 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain V_ATPase_I PF01496.14 gi|345006338|ref|YP_004809191.1| - 0.43 8.3 3.5 0.46 8.2 2.4 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family Atg14 PF10186.4 gi|345006338|ref|YP_004809191.1| - 0.48 9.3 3.9 0.57 9.0 2.7 1.2 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 EMP24_GP25L PF01105.19 gi|345006338|ref|YP_004809191.1| - 0.54 9.9 2.3 0.89 9.2 1.6 1.4 1 0 0 1 1 1 0 emp24/gp25L/p24 family/GOLD DUF2360 PF10152.4 gi|345006338|ref|YP_004809191.1| - 0.62 10.3 11.2 0.81 9.9 7.8 1.2 1 0 0 1 1 1 0 Predicted coiled-coil domain-containing protein (DUF2360) Lsr2 PF11774.3 gi|345006338|ref|YP_004809191.1| - 0.63 9.9 5.5 0.42 10.5 2.7 1.4 1 1 1 2 2 2 0 Lsr2 Mod_r PF07200.8 gi|345006338|ref|YP_004809191.1| - 0.69 9.8 4.7 1.2 9.0 3.2 1.5 1 1 0 1 1 1 0 Modifier of rudimentary (Mod(r)) protein MSA-2c PF12238.3 gi|345006338|ref|YP_004809191.1| - 1.8 8.2 7.7 2.7 7.6 5.3 1.4 1 1 0 1 1 1 0 Merozoite surface antigen 2c ADIP PF11559.3 gi|345006338|ref|YP_004809191.1| - 3.6 7.4 11.7 0.34 10.7 3.4 2.0 1 1 0 1 1 1 0 Afadin- and alpha -actinin-Binding Striatin PF08232.7 gi|345006338|ref|YP_004809191.1| - 3.9 7.8 13.4 20 5.4 9.3 1.9 1 1 0 1 1 1 0 Striatin family IncA PF04156.9 gi|345006338|ref|YP_004809191.1| - 5.1 6.6 10.6 8.2 5.9 7.4 1.6 1 1 0 1 1 1 0 IncA protein DDE_Tnp_1 PF01609.16 gi|345006339|ref|YP_004809192.1| - 9.5e-06 25.3 0.0 2.6e-05 23.8 0.0 1.7 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_7 PF13843.1 gi|345006339|ref|YP_004809192.1| - 0.0001 21.5 0.0 0.00029 19.9 0.0 1.6 2 0 0 2 2 2 1 Transposase IS4 Na_K-ATPase PF00287.13 gi|345006339|ref|YP_004809192.1| - 0.093 11.4 0.0 0.18 10.5 0.0 1.4 1 0 0 1 1 1 0 Sodium / potassium ATPase beta chain STE2 PF02116.10 gi|345006340|ref|YP_004809193.1| - 0.0077 15.2 3.9 0.0093 15.0 2.7 1.2 1 0 0 1 1 1 1 Fungal pheromone mating factor STE2 GPCR DUF3814 PF12769.2 gi|345006340|ref|YP_004809193.1| - 0.065 13.3 9.8 0.076 13.1 1.2 2.4 2 1 0 2 2 2 0 Domain of unknown function (DUF3814) DUF1751 PF08551.5 gi|345006340|ref|YP_004809193.1| - 0.61 10.4 6.2 6.1 7.2 0.2 2.2 2 0 0 2 2 2 0 Eukaryotic integral membrane protein (DUF1751) MnhB PF04039.8 gi|345006340|ref|YP_004809193.1| - 0.92 9.5 10.1 0.16 12.0 2.6 2.1 2 0 0 2 2 2 0 Domain related to MnhB subunit of Na+/H+ antiporter Rab5ip PF07019.7 gi|345006340|ref|YP_004809193.1| - 1.4 9.0 9.0 0.18 11.9 0.7 2.6 1 1 1 3 3 3 0 Rab5-interacting protein (Rab5ip) NfeD PF01957.13 gi|345006340|ref|YP_004809193.1| - 1.5 8.9 14.5 3.5 7.7 1.0 2.7 1 1 2 3 3 3 0 NfeD-like C-terminal, partner-binding DUF4131 PF13567.1 gi|345006340|ref|YP_004809193.1| - 2.7 7.3 9.7 5e+02 -0.1 6.7 2.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4131) RseC_MucC PF04246.7 gi|345006340|ref|YP_004809193.1| - 3.7 7.1 11.2 1.1 8.7 0.6 2.6 1 1 2 3 3 3 0 Positive regulator of sigma(E), RseC/MucC MerC PF03203.9 gi|345006340|ref|YP_004809193.1| - 4.5 7.6 12.7 4.9 7.5 4.7 2.2 1 1 1 2 2 2 0 MerC mercury resistance protein Tmemb_170 PF10190.4 gi|345006340|ref|YP_004809193.1| - 5.8 7.0 11.2 2.5 8.2 2.7 2.2 1 1 1 2 2 2 0 Putative transmembrane protein 170 TAT_signal PF10518.4 gi|345006341|ref|YP_004809194.1| - 0.0099 15.8 0.1 0.016 15.1 0.1 1.4 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence Reprolysin_5 PF13688.1 gi|345006342|ref|YP_004809195.1| - 0.0026 17.6 0.2 0.0036 17.2 0.1 1.3 1 0 0 1 1 1 1 Metallo-peptidase family M12 Reprolysin_3 PF13582.1 gi|345006342|ref|YP_004809195.1| - 0.021 15.3 0.1 0.04 14.4 0.1 1.5 1 0 0 1 1 1 0 Metallo-peptidase family M12B Reprolysin-like Metallopep PF12044.3 gi|345006342|ref|YP_004809195.1| - 0.029 12.8 0.0 0.037 12.4 0.0 1.1 1 0 0 1 1 1 0 Putative peptidase family ABC_tran PF00005.22 gi|345006343|ref|YP_004809196.1| - 2.1e-29 102.5 0.0 4.3e-29 101.5 0.0 1.5 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|345006343|ref|YP_004809196.1| - 4e-08 33.5 0.2 0.003 17.5 0.0 2.1 1 1 0 2 2 2 2 AAA domain TOBE_2 PF08402.5 gi|345006343|ref|YP_004809196.1| - 1.8e-05 24.6 2.4 0.00013 21.9 0.1 3.3 3 1 1 4 4 3 1 TOBE domain AAA_19 PF13245.1 gi|345006343|ref|YP_004809196.1| - 0.00017 21.2 1.3 0.00063 19.4 0.1 2.6 3 1 0 3 3 2 1 Part of AAA domain AAA_16 PF13191.1 gi|345006343|ref|YP_004809196.1| - 0.00019 21.4 1.2 0.00047 20.1 0.8 1.9 1 1 0 1 1 1 1 AAA ATPase domain AAA_30 PF13604.1 gi|345006343|ref|YP_004809196.1| - 0.0041 16.7 0.0 0.021 14.4 0.0 2.1 3 0 0 3 3 3 1 AAA domain TOBE PF03459.12 gi|345006343|ref|YP_004809196.1| - 0.0045 17.0 5.3 0.0047 17.0 0.0 3.3 4 1 0 4 4 4 1 TOBE domain AAA_29 PF13555.1 gi|345006343|ref|YP_004809196.1| - 0.0078 15.7 0.1 0.019 14.4 0.1 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.14 gi|345006343|ref|YP_004809196.1| - 0.0087 15.3 0.0 2.4 7.3 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_33 PF13671.1 gi|345006343|ref|YP_004809196.1| - 0.028 14.2 0.5 0.16 11.8 0.3 2.1 1 1 0 1 1 1 0 AAA domain SbcCD_C PF13558.1 gi|345006343|ref|YP_004809196.1| - 0.031 14.1 0.1 0.3 11.0 0.1 2.4 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_17 PF13207.1 gi|345006343|ref|YP_004809196.1| - 0.046 14.5 0.4 0.12 13.1 0.3 1.9 1 1 0 1 1 1 0 AAA domain AAA_25 PF13481.1 gi|345006343|ref|YP_004809196.1| - 0.049 13.0 0.5 0.11 11.8 0.3 1.8 1 1 0 1 1 1 0 AAA domain AAA_22 PF13401.1 gi|345006343|ref|YP_004809196.1| - 0.053 13.6 0.4 0.43 10.7 0.1 2.1 2 0 0 2 2 2 0 AAA domain MobB PF03205.9 gi|345006343|ref|YP_004809196.1| - 0.061 13.0 0.1 0.13 11.9 0.1 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_15 PF13175.1 gi|345006343|ref|YP_004809196.1| - 0.066 12.2 0.0 2.1 7.3 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain NACHT PF05729.7 gi|345006343|ref|YP_004809196.1| - 0.069 12.8 0.0 0.16 11.6 0.0 1.6 1 0 0 1 1 1 0 NACHT domain DUF258 PF03193.11 gi|345006343|ref|YP_004809196.1| - 0.12 11.5 0.1 0.21 10.7 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 Cuticle_1 PF08140.6 gi|345006343|ref|YP_004809196.1| - 0.78 9.6 3.2 2.3 8.0 0.2 3.3 3 1 1 4 4 4 0 Crustacean cuticle protein repeat BPD_transp_1 PF00528.17 gi|345006344|ref|YP_004809197.1| - 5.7e-20 71.6 15.6 5.7e-20 71.6 10.8 1.6 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component DUF4212 PF13937.1 gi|345006344|ref|YP_004809197.1| - 0.086 12.8 0.4 1.3 9.1 0.0 2.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4212) YjgP_YjgQ PF03739.9 gi|345006344|ref|YP_004809197.1| - 9.1 4.9 10.1 0.64 8.7 0.5 2.3 2 0 0 2 2 2 0 Predicted permease YjgP/YjgQ family SBP_bac_11 PF13531.1 gi|345006345|ref|YP_004809198.1| - 7.6e-18 64.9 0.1 1e-17 64.5 0.1 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.20 gi|345006345|ref|YP_004809198.1| - 0.0044 16.7 0.1 0.0064 16.2 0.1 1.3 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein Tub_2 PF04525.7 gi|345006346|ref|YP_004809199.1| - 1.3e-08 34.4 0.1 0.00035 20.0 0.1 2.8 1 1 1 2 2 2 2 Tubby C 2 Big_3_2 PF12245.3 gi|345006346|ref|YP_004809199.1| - 8.3e-05 22.0 0.4 0.3 10.6 0.0 2.7 1 1 1 2 2 2 2 Bacterial Ig-like domain (group 3) Fil_haemagg PF05594.9 gi|345006346|ref|YP_004809199.1| - 0.29 11.5 2.2 7.1 7.0 0.3 2.4 2 1 0 2 2 2 0 Haemagluttinin repeat GatB_N PF02934.10 gi|345006347|ref|YP_004809200.1| - 3.9e-110 367.2 0.0 5.4e-110 366.8 0.0 1.1 1 0 0 1 1 1 1 GatB/GatE catalytic domain GatB_Yqey PF02637.13 gi|345006347|ref|YP_004809200.1| - 9.9e-42 142.1 0.0 1.8e-41 141.3 0.0 1.4 1 0 0 1 1 1 1 GatB domain Cys_Met_Meta_PP PF01053.15 gi|345006349|ref|YP_004809202.1| - 6.6e-141 469.0 0.0 7.5e-141 468.8 0.0 1.0 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme DegT_DnrJ_EryC1 PF01041.12 gi|345006349|ref|YP_004809202.1| - 4.7e-06 25.8 1.0 4.2e-05 22.7 0.7 2.4 1 1 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_1_2 PF00155.16 gi|345006349|ref|YP_004809202.1| - 1.9e-05 23.8 0.0 2.3e-05 23.5 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.14 gi|345006349|ref|YP_004809202.1| - 0.00032 19.5 0.0 0.00046 19.0 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-V Met_gamma_lyase PF06838.6 gi|345006349|ref|YP_004809202.1| - 0.00061 18.2 0.0 0.0035 15.6 0.0 1.9 1 1 0 1 1 1 1 Methionine gamma-lyase Beta_elim_lyase PF01212.16 gi|345006349|ref|YP_004809202.1| - 0.0011 18.1 0.1 0.01 15.0 0.1 2.3 1 1 0 1 1 1 1 Beta-eliminating lyase MatE PF01554.13 gi|345006350|ref|YP_004809203.1| - 3.4e-66 221.8 22.5 4.1e-37 127.2 6.0 2.3 2 0 0 2 2 2 2 MatE Polysacc_synt_C PF14667.1 gi|345006350|ref|YP_004809203.1| - 1.1e-09 38.2 7.1 1.1e-09 38.2 4.9 4.0 4 1 0 4 4 4 2 Polysaccharide biosynthesis C-terminal domain MVIN PF03023.9 gi|345006350|ref|YP_004809203.1| - 1.3e-06 27.1 6.1 1.3e-06 27.1 4.2 2.6 2 2 2 4 4 4 1 MviN-like protein Peptidase_S9 PF00326.16 gi|345006351|ref|YP_004809204.1| - 9.4e-45 152.4 0.0 1.4e-44 151.8 0.0 1.3 1 0 0 1 1 1 1 Prolyl oligopeptidase family Abhydrolase_5 PF12695.2 gi|345006351|ref|YP_004809204.1| - 2.4e-12 46.7 0.0 5.2e-12 45.7 0.0 1.5 1 0 0 1 1 1 1 Alpha/beta hydrolase family Peptidase_S15 PF02129.13 gi|345006351|ref|YP_004809204.1| - 1.1e-10 41.3 0.0 8.2e-09 35.2 0.0 2.2 1 1 1 2 2 2 1 X-Pro dipeptidyl-peptidase (S15 family) DLH PF01738.13 gi|345006351|ref|YP_004809204.1| - 2.2e-09 36.9 0.0 5.9e-09 35.5 0.0 1.6 1 1 0 1 1 1 1 Dienelactone hydrolase family Abhydrolase_6 PF12697.2 gi|345006351|ref|YP_004809204.1| - 1.5e-07 31.5 0.8 7.3e-07 29.3 0.5 2.1 1 1 0 1 1 1 1 Alpha/beta hydrolase family PD40 PF07676.7 gi|345006351|ref|YP_004809204.1| - 0.00017 21.1 4.6 0.8 9.4 0.1 4.3 4 0 0 4 4 4 1 WD40-like Beta Propeller Repeat DPPIV_N PF00930.16 gi|345006351|ref|YP_004809204.1| - 0.00025 19.7 0.0 0.52 8.8 0.0 3.5 2 1 1 4 4 4 3 Dipeptidyl peptidase IV (DPP IV) N-terminal region Esterase PF00756.15 gi|345006351|ref|YP_004809204.1| - 0.00069 19.1 0.0 0.03 13.7 0.0 2.6 2 0 0 2 2 2 1 Putative esterase Abhydrolase_1 PF00561.15 gi|345006351|ref|YP_004809204.1| - 0.00073 19.1 0.1 0.71 9.3 0.1 2.4 1 1 1 2 2 2 2 alpha/beta hydrolase fold Abhydrolase_2 PF02230.11 gi|345006351|ref|YP_004809204.1| - 0.0012 18.3 0.0 0.031 13.6 0.0 2.1 2 0 0 2 2 2 1 Phospholipase/Carboxylesterase AXE1 PF05448.7 gi|345006351|ref|YP_004809204.1| - 0.0044 15.5 0.2 0.42 9.0 0.1 2.1 1 1 0 1 1 1 1 Acetyl xylan esterase (AXE1) Abhydrolase_3 PF07859.8 gi|345006351|ref|YP_004809204.1| - 0.021 14.4 0.1 0.14 11.7 0.1 2.0 1 1 0 1 1 1 0 alpha/beta hydrolase fold BAAT_C PF08840.6 gi|345006351|ref|YP_004809204.1| - 0.036 13.7 0.0 2 8.0 0.0 2.2 1 1 0 1 1 1 0 BAAT / Acyl-CoA thioester hydrolase C terminal Peptidase_S28 PF05577.7 gi|345006351|ref|YP_004809204.1| - 0.1 11.1 0.0 0.16 10.5 0.0 1.1 1 0 0 1 1 1 0 Serine carboxypeptidase S28 DUF218 PF02698.12 gi|345006351|ref|YP_004809204.1| - 0.12 11.8 0.0 0.25 10.8 0.0 1.5 1 0 0 1 1 1 0 DUF218 domain DUF2976 PF11190.3 gi|345006352|ref|YP_004809205.1| - 0.19 11.2 2.4 0.25 10.8 1.7 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2976) Trp_oprn_chp PF09534.5 gi|345006352|ref|YP_004809205.1| - 0.73 9.4 7.8 0.86 9.1 5.4 1.0 1 0 0 1 1 1 0 Tryptophan-associated transmembrane protein (Trp_oprn_chp) Potass_KdpF PF09604.5 gi|345006352|ref|YP_004809205.1| - 2.9 7.8 8.2 0.17 11.7 1.1 2.2 2 1 0 2 2 2 0 F subunit of K+-transporting ATPase (Potass_KdpF) DUF1469 PF07332.6 gi|345006352|ref|YP_004809205.1| - 4.4 7.0 11.4 5.5 6.7 7.9 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1469) Creatininase PF02633.9 gi|345006353|ref|YP_004809206.1| - 3.6e-58 196.4 1.8 4.3e-58 196.2 1.3 1.0 1 0 0 1 1 1 1 Creatinine amidohydrolase Copper-bind PF00127.15 gi|345006354|ref|YP_004809207.1| - 4.9e-10 39.5 0.0 1.2e-09 38.3 0.0 1.5 1 1 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family Cpn10 PF00166.16 gi|345006354|ref|YP_004809207.1| - 0.0065 16.3 0.0 0.0079 16.1 0.0 1.2 1 0 0 1 1 1 1 Chaperonin 10 Kd subunit Topoisom_bac PF01131.15 gi|345006355|ref|YP_004809208.1| - 1.3e-108 363.4 0.0 1.6e-108 363.1 0.0 1.1 1 0 0 1 1 1 1 DNA topoisomerase zf-C4_Topoisom PF01396.14 gi|345006355|ref|YP_004809208.1| - 1.5e-19 69.1 2.4 1.6e-14 53.1 0.8 4.0 5 0 0 5 5 5 2 Topoisomerase DNA binding C4 zinc finger Toprim PF01751.17 gi|345006355|ref|YP_004809208.1| - 2.9e-17 62.4 0.0 6.1e-17 61.4 0.0 1.6 1 0 0 1 1 1 1 Toprim domain HHH_5 PF14520.1 gi|345006355|ref|YP_004809208.1| - 3.4e-10 39.9 1.4 3.1e-09 36.8 1.1 2.6 2 0 0 2 2 1 1 Helix-hairpin-helix domain HHH PF00633.18 gi|345006355|ref|YP_004809208.1| - 3.6e-05 23.2 1.3 0.0079 15.8 0.1 3.1 2 0 0 2 2 2 1 Helix-hairpin-helix motif Cdd1 PF11731.3 gi|345006355|ref|YP_004809208.1| - 0.00017 21.4 0.0 0.00045 20.0 0.0 1.6 1 0 0 1 1 1 1 Pathogenicity locus DUF3375 PF11855.3 gi|345006355|ref|YP_004809208.1| - 0.0047 15.7 0.6 0.01 14.6 0.4 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF3375) DNA_pol_lambd_f PF10391.4 gi|345006355|ref|YP_004809208.1| - 0.0058 16.1 0.1 0.035 13.6 0.0 2.4 1 1 1 2 2 2 1 Fingers domain of DNA polymerase lambda Toprim_4 PF13662.1 gi|345006355|ref|YP_004809208.1| - 0.015 15.2 2.3 0.13 12.2 0.1 3.3 3 1 1 4 4 3 0 Toprim domain DUF4332 PF14229.1 gi|345006355|ref|YP_004809208.1| - 0.029 14.3 0.0 0.065 13.1 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4332) HEXIM PF15313.1 gi|345006355|ref|YP_004809208.1| - 0.055 13.6 0.0 0.14 12.3 0.0 1.7 1 0 0 1 1 1 0 Hexamethylene bis-acetamide-inducible protein zf-CSL PF05207.8 gi|345006355|ref|YP_004809208.1| - 0.16 11.4 0.8 4.9 6.7 0.2 3.0 2 0 0 2 2 2 0 CSL zinc finger DZR PF12773.2 gi|345006355|ref|YP_004809208.1| - 1.6 8.6 5.2 3.9 7.3 0.7 2.7 3 0 0 3 3 3 0 Double zinc ribbon Ogr_Delta PF04606.7 gi|345006355|ref|YP_004809208.1| - 2.9 7.6 8.3 0.36 10.5 0.1 2.9 3 0 0 3 3 3 0 Ogr/Delta-like zinc finger TF_Zn_Ribbon PF08271.7 gi|345006355|ref|YP_004809208.1| - 6.5 6.1 8.0 4 6.8 0.1 3.3 3 0 0 3 3 3 0 TFIIB zinc-binding PemK PF02452.12 gi|345006356|ref|YP_004809209.1| - 0.085 13.0 0.0 0.089 13.0 0.0 1.2 1 0 0 1 1 1 0 PemK-like protein MarR_2 PF12802.2 gi|345006357|ref|YP_004809210.1| - 3.9e-08 32.8 0.0 5.3e-08 32.4 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.5 gi|345006357|ref|YP_004809210.1| - 1.1e-07 31.3 0.2 1.7e-07 30.6 0.1 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_24 PF13412.1 gi|345006357|ref|YP_004809210.1| - 3.2e-06 26.4 0.0 5.1e-06 25.7 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.14 gi|345006357|ref|YP_004809210.1| - 8.7e-06 25.3 0.0 1.3e-05 24.8 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.17 gi|345006357|ref|YP_004809210.1| - 2e-05 24.1 0.0 3.4e-05 23.4 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_Crp_2 PF13545.1 gi|345006357|ref|YP_004809210.1| - 0.00011 21.8 0.0 0.00016 21.3 0.0 1.3 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_27 PF13463.1 gi|345006357|ref|YP_004809210.1| - 0.00018 21.7 0.0 0.00028 21.1 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_20 PF12840.2 gi|345006357|ref|YP_004809210.1| - 0.00028 20.6 0.1 0.00042 20.0 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain TFIIE_alpha PF02002.12 gi|345006357|ref|YP_004809210.1| - 0.00043 19.7 0.0 0.0017 17.8 0.0 1.7 1 1 1 2 2 2 1 TFIIE alpha subunit Rrf2 PF02082.15 gi|345006357|ref|YP_004809210.1| - 0.00046 20.2 0.0 0.00065 19.7 0.0 1.2 1 0 0 1 1 1 1 Transcriptional regulator Sulfolobus_pRN PF05584.6 gi|345006357|ref|YP_004809210.1| - 0.0036 17.2 0.0 0.0047 16.8 0.0 1.1 1 0 0 1 1 1 1 Sulfolobus plasmid regulatory protein GntR PF00392.16 gi|345006357|ref|YP_004809210.1| - 0.0079 15.6 0.1 0.013 14.9 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_5 PF01022.15 gi|345006357|ref|YP_004809210.1| - 0.0093 15.6 0.0 0.015 14.9 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family B-block_TFIIIC PF04182.7 gi|345006357|ref|YP_004809210.1| - 0.015 15.1 0.0 0.017 14.9 0.0 1.1 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC Fe_dep_repress PF01325.14 gi|345006357|ref|YP_004809210.1| - 0.017 15.0 0.0 0.036 13.9 0.0 1.5 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain Trans_reg_C PF00486.23 gi|345006357|ref|YP_004809210.1| - 0.056 13.3 0.0 0.089 12.7 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulatory protein, C terminal Penicillinase_R PF03965.11 gi|345006357|ref|YP_004809210.1| - 0.11 12.6 0.0 0.13 12.3 0.0 1.2 1 0 0 1 1 1 0 Penicillinase repressor HTH_23 PF13384.1 gi|345006357|ref|YP_004809210.1| - 0.11 12.1 0.1 0.16 11.6 0.1 1.3 1 0 0 1 1 1 0 Homeodomain-like domain TaqI_C PF12950.2 gi|345006358|ref|YP_004809211.1| - 4.3e-16 58.7 0.0 8.5e-16 57.7 0.0 1.5 1 0 0 1 1 1 1 TaqI-like C-terminal specificity domain Eco57I PF07669.6 gi|345006358|ref|YP_004809211.1| - 1.5e-15 57.4 0.0 3.6e-15 56.2 0.0 1.6 1 0 0 1 1 1 1 Eco57I restriction-modification methylase Methyltransf_26 PF13659.1 gi|345006358|ref|YP_004809211.1| - 8.2e-12 45.1 0.1 6e-11 42.3 0.1 2.4 1 1 0 1 1 1 1 Methyltransferase domain N6_Mtase PF02384.11 gi|345006358|ref|YP_004809211.1| - 2.7e-11 43.1 0.0 7.9e-06 25.1 0.0 2.9 2 1 0 2 2 2 2 N-6 DNA Methylase HSDR_N PF04313.9 gi|345006358|ref|YP_004809211.1| - 0.0013 18.5 0.0 0.018 14.7 0.0 2.7 2 1 1 3 3 3 1 Type I restriction enzyme R protein N terminus (HSDR_N) DUF1268 PF06896.6 gi|345006358|ref|YP_004809211.1| - 1.3 9.4 5.6 0.79 10.0 0.4 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF1268) PcrB PF01884.12 gi|345006359|ref|YP_004809212.1| - 3.4e-50 170.4 0.1 4.3e-50 170.1 0.1 1.0 1 0 0 1 1 1 1 PcrB family DUF2163 PF09931.4 gi|345006359|ref|YP_004809212.1| - 0.099 12.4 0.1 0.18 11.5 0.1 1.4 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2163) tRNA-synt_2 PF00152.15 gi|345006360|ref|YP_004809213.1| - 2.8e-90 302.5 0.2 3.3e-90 302.2 0.1 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) tRNA_anti-codon PF01336.20 gi|345006360|ref|YP_004809213.1| - 7.8e-13 48.0 0.0 1.4e-12 47.3 0.0 1.4 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA-synt_2d PF01409.15 gi|345006360|ref|YP_004809213.1| - 0.0019 17.4 0.1 0.021 14.0 0.0 2.3 2 0 0 2 2 2 1 tRNA synthetases class II core domain (F) Dak1 PF02733.12 gi|345006360|ref|YP_004809213.1| - 0.16 10.4 0.1 14 4.1 0.0 2.3 2 0 0 2 2 2 0 Dak1 domain DUF21 PF01595.15 gi|345006361|ref|YP_004809214.1| - 3.9e-53 179.4 0.4 5.7e-53 178.9 0.3 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF21 CorC_HlyC PF03471.12 gi|345006361|ref|YP_004809214.1| - 4.4e-22 77.6 1.4 1.2e-21 76.2 1.0 1.8 1 0 0 1 1 1 1 Transporter associated domain CBS PF00571.23 gi|345006361|ref|YP_004809214.1| - 2.1e-19 69.0 4.0 2.7e-09 36.6 0.1 2.9 3 0 0 3 3 3 2 CBS domain GatB_Yqey PF02637.13 gi|345006361|ref|YP_004809214.1| - 0.033 13.9 2.3 0.41 10.3 0.0 2.4 2 0 0 2 2 2 0 GatB domain PHB_acc_N PF07879.6 gi|345006361|ref|YP_004809214.1| - 0.099 12.3 0.1 0.35 10.6 0.1 2.0 1 0 0 1 1 1 0 PHB/PHA accumulation regulator DNA-binding domain GST_N_3 PF13417.1 gi|345006362|ref|YP_004809215.1| - 9.2e-15 54.6 0.0 1e-14 54.4 0.0 1.0 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain Glutaredoxin PF00462.19 gi|345006362|ref|YP_004809215.1| - 4.7e-13 48.9 0.0 6.8e-13 48.4 0.0 1.2 1 0 0 1 1 1 1 Glutaredoxin GST_N_2 PF13409.1 gi|345006362|ref|YP_004809215.1| - 3.4e-11 42.9 0.0 4.1e-11 42.7 0.0 1.1 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_N PF02798.15 gi|345006362|ref|YP_004809215.1| - 0.00016 21.8 0.0 0.0002 21.4 0.0 1.2 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain DUF836 PF05768.9 gi|345006362|ref|YP_004809215.1| - 0.0093 16.2 0.0 0.0099 16.1 0.0 1.2 1 0 0 1 1 1 1 Glutaredoxin-like domain (DUF836) AhpC-TSA PF00578.16 gi|345006363|ref|YP_004809216.1| - 2.1e-17 62.9 0.0 2.6e-17 62.6 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.5 gi|345006363|ref|YP_004809216.1| - 9.2e-07 28.5 0.0 5.6e-06 25.9 0.0 1.9 1 1 0 1 1 1 1 Redoxin AhpC-TSA_2 PF13911.1 gi|345006363|ref|YP_004809216.1| - 0.0002 21.2 0.0 0.013 15.4 0.0 2.1 1 1 0 1 1 1 1 AhpC/TSA antioxidant enzyme Sua5_yciO_yrdC PF01300.13 gi|345006364|ref|YP_004809217.1| - 1.6e-45 154.5 0.0 1.8e-45 154.4 0.0 1.0 1 0 0 1 1 1 1 Telomere recombination Cas_Cas4 PF01930.12 gi|345006365|ref|YP_004809218.1| - 3e-06 27.2 0.0 4.1e-05 23.5 0.0 2.0 2 0 0 2 2 2 1 Domain of unknown function DUF83 PDDEXK_1 PF12705.2 gi|345006365|ref|YP_004809218.1| - 0.16 11.3 1.4 1 8.7 0.1 2.2 1 1 1 2 2 2 0 PD-(D/E)XK nuclease superfamily BioY PF02632.9 gi|345006367|ref|YP_004809220.1| - 1.3e-36 125.5 19.4 1.3e-36 125.5 13.4 1.3 2 0 0 2 2 2 1 BioY family DUF3816 PF12822.2 gi|345006367|ref|YP_004809220.1| - 0.029 14.2 19.2 0.085 12.7 13.3 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF3816) ABC_tran PF00005.22 gi|345006368|ref|YP_004809221.1| - 2.7e-26 92.4 0.0 3.6e-26 92.1 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|345006368|ref|YP_004809221.1| - 1.5e-10 41.5 0.0 2.4e-05 24.4 0.0 2.1 2 0 0 2 2 2 2 AAA domain AAA_10 PF12846.2 gi|345006368|ref|YP_004809221.1| - 7.7e-07 28.8 0.0 0.012 15.1 0.0 2.1 2 0 0 2 2 2 2 AAA-like domain SMC_N PF02463.14 gi|345006368|ref|YP_004809221.1| - 7.8e-06 25.2 0.0 4.2e-05 22.8 0.0 1.9 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain SbcCD_C PF13558.1 gi|345006368|ref|YP_004809221.1| - 0.0001 22.1 0.2 0.0012 18.7 0.2 2.1 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_22 PF13401.1 gi|345006368|ref|YP_004809221.1| - 0.00024 21.2 0.1 0.00097 19.2 0.0 1.9 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|345006368|ref|YP_004809221.1| - 0.00069 18.7 0.0 0.54 9.2 0.0 2.0 1 1 1 2 2 2 2 AAA ATPase domain HAD PF12710.2 gi|345006368|ref|YP_004809221.1| - 0.00095 19.3 0.0 0.0022 18.1 0.0 1.4 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase AAA_16 PF13191.1 gi|345006368|ref|YP_004809221.1| - 0.0013 18.7 0.4 0.0027 17.7 0.3 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.1 gi|345006368|ref|YP_004809221.1| - 0.0014 18.0 0.0 0.0024 17.3 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_28 PF13521.1 gi|345006368|ref|YP_004809221.1| - 0.0021 18.0 0.0 0.0035 17.2 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_25 PF13481.1 gi|345006368|ref|YP_004809221.1| - 0.0021 17.5 0.0 0.023 14.1 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_33 PF13671.1 gi|345006368|ref|YP_004809221.1| - 0.0023 17.8 0.0 0.0056 16.5 0.0 1.7 2 0 0 2 2 2 1 AAA domain AAA_13 PF13166.1 gi|345006368|ref|YP_004809221.1| - 0.0031 16.0 0.0 0.049 12.0 0.0 2.0 2 0 0 2 2 2 1 AAA domain cobW PF02492.14 gi|345006368|ref|YP_004809221.1| - 0.0032 16.9 0.1 0.0057 16.1 0.0 1.4 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain AAA_18 PF13238.1 gi|345006368|ref|YP_004809221.1| - 0.011 16.0 0.0 0.19 12.0 0.0 2.1 2 0 0 2 2 2 0 AAA domain SRP54 PF00448.17 gi|345006368|ref|YP_004809221.1| - 0.013 14.9 0.0 0.027 13.9 0.0 1.5 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain FtsK_SpoIIIE PF01580.13 gi|345006368|ref|YP_004809221.1| - 0.016 14.6 0.0 0.031 13.7 0.0 1.4 1 0 0 1 1 1 0 FtsK/SpoIIIE family AAA_17 PF13207.1 gi|345006368|ref|YP_004809221.1| - 0.018 15.8 0.1 0.045 14.5 0.1 1.8 1 1 0 1 1 1 0 AAA domain UPF0079 PF02367.12 gi|345006368|ref|YP_004809221.1| - 0.019 14.5 0.0 0.032 13.8 0.0 1.3 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 Mg_chelatase PF01078.16 gi|345006368|ref|YP_004809221.1| - 0.024 13.7 0.0 0.042 13.0 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI DUF258 PF03193.11 gi|345006368|ref|YP_004809221.1| - 0.025 13.7 0.0 0.033 13.3 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function, DUF258 NACHT PF05729.7 gi|345006368|ref|YP_004809221.1| - 0.025 14.2 0.0 0.04 13.5 0.0 1.3 1 0 0 1 1 1 0 NACHT domain AAA_19 PF13245.1 gi|345006368|ref|YP_004809221.1| - 0.029 14.1 2.9 0.069 12.9 0.1 2.8 3 0 0 3 3 3 0 Part of AAA domain AAA_23 PF13476.1 gi|345006368|ref|YP_004809221.1| - 0.031 14.6 0.0 0.047 14.0 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.1 gi|345006368|ref|YP_004809221.1| - 0.045 13.3 0.1 0.11 12.0 0.0 1.6 2 0 0 2 2 2 0 AAA domain AAA_5 PF07728.9 gi|345006368|ref|YP_004809221.1| - 0.052 13.2 0.0 0.1 12.2 0.0 1.6 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) DUF3584 PF12128.3 gi|345006368|ref|YP_004809221.1| - 0.064 10.5 0.0 0.083 10.2 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) AAA_14 PF13173.1 gi|345006368|ref|YP_004809221.1| - 0.079 12.8 0.0 0.12 12.2 0.0 1.3 1 0 0 1 1 1 0 AAA domain MobB PF03205.9 gi|345006368|ref|YP_004809221.1| - 0.082 12.6 0.0 0.16 11.6 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B Miro PF08477.8 gi|345006368|ref|YP_004809221.1| - 0.1 13.1 0.0 0.17 12.3 0.0 1.4 1 0 0 1 1 1 0 Miro-like protein NTPase_1 PF03266.10 gi|345006368|ref|YP_004809221.1| - 0.11 12.2 0.1 0.23 11.1 0.0 1.6 2 0 0 2 2 1 0 NTPase T2SE PF00437.15 gi|345006368|ref|YP_004809221.1| - 0.12 11.2 0.1 0.48 9.2 0.0 1.9 3 0 0 3 3 3 0 Type II/IV secretion system protein PduV-EutP PF10662.4 gi|345006368|ref|YP_004809221.1| - 0.14 11.6 0.0 0.25 10.8 0.0 1.4 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation ATP_bind_1 PF03029.12 gi|345006368|ref|YP_004809221.1| - 0.17 11.4 0.1 0.25 10.8 0.1 1.2 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein CbiQ PF02361.11 gi|345006369|ref|YP_004809222.1| - 1.6e-15 57.2 5.8 3e-15 56.4 4.0 1.4 1 1 0 1 1 1 1 Cobalt transport protein CCG PF02754.11 gi|345006371|ref|YP_004809224.1| - 7.4e-18 64.3 0.0 1.6e-11 44.0 0.1 2.5 2 0 0 2 2 2 2 Cysteine-rich domain Fer4_9 PF13187.1 gi|345006371|ref|YP_004809224.1| - 9.9e-12 44.9 6.9 9.2e-11 41.8 3.6 2.4 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|345006371|ref|YP_004809224.1| - 1.3e-11 44.3 5.0 1.3e-11 44.3 3.4 1.9 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|345006371|ref|YP_004809224.1| - 8.8e-10 37.7 11.9 1.8e-05 24.1 1.4 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.1 gi|345006371|ref|YP_004809224.1| - 3.9e-08 33.5 6.5 0.0045 17.3 0.2 3.4 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|345006371|ref|YP_004809224.1| - 5.1e-08 33.1 21.0 7.5e-07 29.4 7.2 2.5 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|345006371|ref|YP_004809224.1| - 7.1e-08 32.1 12.5 2.7e-07 30.2 7.6 2.5 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|345006371|ref|YP_004809224.1| - 1.1e-06 28.9 4.9 1.1e-06 28.9 3.4 2.1 2 1 0 2 2 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|345006371|ref|YP_004809224.1| - 1.8e-06 27.5 21.7 6.8e-05 22.5 1.6 2.9 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|345006371|ref|YP_004809224.1| - 8.6e-06 25.3 20.1 0.00025 20.7 1.7 3.1 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|345006371|ref|YP_004809224.1| - 9.5e-05 22.1 10.5 0.015 15.1 0.3 2.9 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|345006371|ref|YP_004809224.1| - 0.00018 21.5 19.1 0.0027 17.9 0.8 3.0 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|345006371|ref|YP_004809224.1| - 0.00037 21.1 10.7 0.0084 16.8 8.0 2.4 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_15 PF13459.1 gi|345006371|ref|YP_004809224.1| - 0.017 15.6 7.9 0.21 12.1 0.4 3.2 2 1 0 2 2 2 0 4Fe-4S single cluster domain Fer4_3 PF12798.2 gi|345006371|ref|YP_004809224.1| - 0.075 13.6 24.6 0.17 12.5 3.4 3.1 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_13 PF13370.1 gi|345006371|ref|YP_004809224.1| - 0.17 12.3 12.8 1.5 9.2 2.4 2.8 2 0 0 2 2 2 0 4Fe-4S single cluster domain DUF3918 PF13056.1 gi|345006371|ref|YP_004809224.1| - 1 8.7 3.2 1.2 8.5 0.1 2.5 3 0 0 3 3 3 0 Protein of unknown function (DUF3918) DUF429 PF04250.8 gi|345006372|ref|YP_004809225.1| - 3e-07 29.9 0.1 1.2e-05 24.6 0.1 2.1 2 0 0 2 2 2 2 Protein of unknown function (DUF429) Radical_SAM PF04055.16 gi|345006373|ref|YP_004809226.1| - 4.7e-19 69.1 0.0 1.2e-18 67.7 0.0 1.8 1 0 0 1 1 1 1 Radical SAM superfamily HHH PF00633.18 gi|345006373|ref|YP_004809226.1| - 0.0031 17.1 0.0 0.012 15.2 0.0 2.0 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_3 PF12836.2 gi|345006373|ref|YP_004809226.1| - 0.018 15.0 0.0 0.045 13.6 0.0 1.6 1 0 0 1 1 1 0 Helix-hairpin-helix motif Lactamase_B PF00753.22 gi|345006374|ref|YP_004809227.1| - 7e-20 71.4 6.1 1.6e-15 57.2 3.1 2.3 2 0 0 2 2 2 2 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|345006374|ref|YP_004809227.1| - 0.042 13.3 0.0 0.065 12.7 0.0 1.3 1 0 0 1 1 1 0 Beta-lactamase superfamily domain Prok-JAB PF14464.1 gi|345006374|ref|YP_004809227.1| - 0.2 11.2 1.2 4.1 7.0 0.2 2.6 1 1 1 2 2 2 0 Prokaryotic homologs of the JAB domain HATPase_c PF02518.21 gi|345006375|ref|YP_004809228.1| - 7.8e-15 54.5 0.0 1.3e-14 53.8 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.1 gi|345006375|ref|YP_004809228.1| - 4.9e-06 26.3 0.6 1.3e-05 25.0 0.0 1.9 1 1 0 2 2 2 1 Histidine kinase-like ATPase domain PAS_4 PF08448.5 gi|345006375|ref|YP_004809228.1| - 0.00011 22.2 2.3 0.0065 16.4 0.2 3.0 2 1 0 2 2 2 1 PAS fold HisKA PF00512.20 gi|345006375|ref|YP_004809228.1| - 0.0044 16.9 0.9 0.012 15.6 0.6 1.6 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain PAS PF00989.19 gi|345006375|ref|YP_004809228.1| - 0.047 13.4 0.1 0.25 11.1 0.0 2.2 2 0 0 2 2 2 0 PAS fold PAS_8 PF13188.1 gi|345006375|ref|YP_004809228.1| - 0.079 12.8 0.0 0.23 11.3 0.0 1.8 1 0 0 1 1 1 0 PAS domain HATPase_c_3 PF13589.1 gi|345006375|ref|YP_004809228.1| - 0.11 12.1 0.0 0.21 11.2 0.0 1.4 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DUF1492 PF07374.6 gi|345006375|ref|YP_004809228.1| - 0.15 12.1 0.1 0.27 11.3 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1492) CxxCxxCC PF03692.10 gi|345006376|ref|YP_004809229.1| - 2.4e-13 50.3 0.0 4.7e-13 49.4 0.0 1.5 1 1 0 1 1 1 1 Putative zinc- or iron-chelating domain HIPIP PF01355.12 gi|345006376|ref|YP_004809229.1| - 0.052 13.6 1.9 0.16 12.1 0.1 2.2 2 0 0 2 2 2 0 High potential iron-sulfur protein TRAM PF01938.15 gi|345006377|ref|YP_004809230.1| - 1.3e-13 50.4 4.7 1.5e-13 50.3 2.4 1.7 2 0 0 2 2 2 1 TRAM domain Hexapep PF00132.19 gi|345006377|ref|YP_004809230.1| - 0.078 12.5 1.7 0.11 12.0 0.1 1.9 2 0 0 2 2 2 0 Bacterial transferase hexapeptide (six repeats) Methyltransf_11 PF08241.7 gi|345006378|ref|YP_004809231.1| - 6.1e-23 81.1 0.0 9.8e-23 80.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|345006378|ref|YP_004809231.1| - 4.3e-18 65.3 0.0 5.6e-18 64.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|345006378|ref|YP_004809231.1| - 1.3e-15 57.9 0.0 2.2e-15 57.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|345006378|ref|YP_004809231.1| - 2e-15 56.9 0.0 3.2e-15 56.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|345006378|ref|YP_004809231.1| - 1.1e-14 54.1 0.0 1.5e-14 53.6 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_23 PF13489.1 gi|345006378|ref|YP_004809231.1| - 5.2e-14 52.2 0.0 6.6e-14 51.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|345006378|ref|YP_004809231.1| - 4.5e-13 49.5 0.0 6.7e-13 48.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|345006378|ref|YP_004809231.1| - 1.8e-10 40.9 0.0 2.4e-10 40.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.13 gi|345006378|ref|YP_004809231.1| - 4.6e-10 39.3 0.0 1.2e-08 34.7 0.0 2.2 1 1 1 2 2 2 1 Putative RNA methylase family UPF0020 MTS PF05175.9 gi|345006378|ref|YP_004809231.1| - 4.1e-06 26.2 0.0 5.6e-06 25.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain RrnaAD PF00398.15 gi|345006378|ref|YP_004809231.1| - 3.8e-05 22.8 0.0 4e-05 22.7 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase CMAS PF02353.15 gi|345006378|ref|YP_004809231.1| - 0.00012 21.2 0.0 0.00017 20.7 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_9 PF08003.6 gi|345006378|ref|YP_004809231.1| - 0.00067 18.4 0.0 0.0009 18.0 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) Methyltransf_20 PF12147.3 gi|345006378|ref|YP_004809231.1| - 0.00082 18.3 0.0 0.0012 17.8 0.0 1.3 1 0 0 1 1 1 1 Putative methyltransferase tRNA_U5-meth_tr PF05958.6 gi|345006378|ref|YP_004809231.1| - 0.0011 17.7 0.0 0.0014 17.4 0.0 1.2 1 0 0 1 1 1 1 tRNA (Uracil-5-)-methyltransferase Methyltransf_4 PF02390.12 gi|345006378|ref|YP_004809231.1| - 0.0011 18.0 0.0 0.0018 17.3 0.0 1.3 1 0 0 1 1 1 1 Putative methyltransferase MetW PF07021.7 gi|345006378|ref|YP_004809231.1| - 0.0022 17.3 0.0 0.0034 16.8 0.0 1.3 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW TehB PF03848.9 gi|345006378|ref|YP_004809231.1| - 0.0038 16.3 0.0 0.0051 15.9 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB NodS PF05401.6 gi|345006378|ref|YP_004809231.1| - 0.0081 15.5 0.0 0.01 15.2 0.0 1.1 1 0 0 1 1 1 1 Nodulation protein S (NodS) Methyltransf_15 PF09445.5 gi|345006378|ref|YP_004809231.1| - 0.0082 15.7 0.0 0.011 15.3 0.0 1.2 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase TPMT PF05724.6 gi|345006378|ref|YP_004809231.1| - 0.011 15.1 0.0 0.015 14.7 0.0 1.2 1 0 0 1 1 1 0 Thiopurine S-methyltransferase (TPMT) Methyltransf_3 PF01596.12 gi|345006378|ref|YP_004809231.1| - 0.015 14.3 0.0 0.024 13.7 0.0 1.2 1 0 0 1 1 1 0 O-methyltransferase DUF938 PF06080.7 gi|345006378|ref|YP_004809231.1| - 0.15 11.5 0.0 0.54 9.7 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF938) DUF1772 PF08592.6 gi|345006379|ref|YP_004809232.1| - 0.18 11.5 2.6 0.22 11.2 1.8 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF1772) AA_permease_C PF13906.1 gi|345006379|ref|YP_004809232.1| - 0.29 11.0 1.8 0.51 10.2 1.2 1.4 1 0 0 1 1 1 0 C-terminus of AA_permease DUF1514 PF07438.6 gi|345006379|ref|YP_004809232.1| - 1.1 9.1 3.1 1.2 9.0 1.5 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF1514) Pyridox_oxidase PF01243.15 gi|345006380|ref|YP_004809233.1| - 1.4e-18 66.6 0.0 1.9e-18 66.2 0.0 1.1 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Pyridox_ox_2 PF12900.2 gi|345006380|ref|YP_004809233.1| - 3.2e-06 27.0 0.1 3.8e-06 26.7 0.0 1.0 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Glycos_transf_2 PF00535.21 gi|345006381|ref|YP_004809234.1| - 1e-16 61.0 0.0 1.6e-16 60.4 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|345006381|ref|YP_004809234.1| - 7.2e-06 25.9 3.4 0.00015 21.6 2.4 2.1 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.4 gi|345006381|ref|YP_004809234.1| - 0.013 14.6 0.0 0.019 14.0 0.0 1.2 1 0 0 1 1 1 0 Glycosyltransferase like family 2 DDE_Tnp_1 PF01609.16 gi|345006382|ref|YP_004809235.1| - 0.0083 15.6 0.0 0.035 13.6 0.0 2.0 1 1 0 1 1 1 1 Transposase DDE domain Amidohydro_2 PF04909.9 gi|345006383|ref|YP_004809236.1| - 1.5e-10 41.1 4.3 2e-10 40.6 3.0 1.3 1 1 0 1 1 1 1 Amidohydrolase Pribosyltran PF00156.22 gi|345006384|ref|YP_004809237.1| - 2.6e-20 72.3 0.0 4e-20 71.8 0.0 1.3 1 0 0 1 1 1 1 Phosphoribosyl transferase domain GATase PF00117.23 gi|345006385|ref|YP_004809238.1| - 1.8e-19 69.9 0.0 2.4e-19 69.5 0.0 1.1 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|345006385|ref|YP_004809238.1| - 1.5e-08 34.3 0.1 3e-07 30.1 0.1 2.6 1 1 0 1 1 1 1 Peptidase C26 DJ-1_PfpI PF01965.19 gi|345006385|ref|YP_004809238.1| - 0.0028 17.1 0.0 0.0059 16.0 0.0 1.6 1 1 0 1 1 1 1 DJ-1/PfpI family GATase_3 PF07685.9 gi|345006385|ref|YP_004809238.1| - 0.0063 16.1 0.0 0.011 15.3 0.0 1.3 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain HTS PF04204.11 gi|345006385|ref|YP_004809238.1| - 0.0074 15.0 0.0 0.03 13.0 0.0 1.8 1 1 0 1 1 1 1 Homoserine O-succinyltransferase DUF4066 PF13278.1 gi|345006385|ref|YP_004809238.1| - 0.016 14.4 0.0 0.045 13.0 0.0 1.7 2 0 0 2 2 2 0 Putative amidotransferase Acyl-CoA_dh_1 PF00441.19 gi|345006386|ref|YP_004809239.1| - 7.9e-32 110.4 1.1 2.2e-31 108.9 1.2 1.5 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.11 gi|345006386|ref|YP_004809239.1| - 2.2e-23 83.0 0.1 4.5e-23 81.9 0.0 1.6 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_M PF02770.14 gi|345006386|ref|YP_004809239.1| - 1.8e-20 72.1 0.0 4.5e-20 70.8 0.0 1.6 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.6 gi|345006386|ref|YP_004809239.1| - 1.5e-10 41.3 1.3 2.5e-10 40.7 0.9 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain DUF393 PF04134.7 gi|345006388|ref|YP_004809241.1| - 1.3e-09 39.1 0.3 1.5e-09 38.9 0.2 1.0 1 0 0 1 1 1 1 Protein of unknown function, DUF393 Churchill PF06573.6 gi|345006389|ref|YP_004809242.1| - 0.016 15.2 0.6 0.017 15.1 0.4 1.1 1 0 0 1 1 1 0 Churchill protein Prim_Zn_Ribbon PF08273.7 gi|345006389|ref|YP_004809242.1| - 0.22 11.6 1.7 0.45 10.6 1.1 1.5 1 0 0 1 1 1 0 Zinc-binding domain of primase-helicase YdjO PF14169.1 gi|345006389|ref|YP_004809242.1| - 0.37 10.2 5.0 3 7.3 3.4 2.0 1 1 0 1 1 1 0 Cold-inducible protein YdjO zf-RING-like PF08746.6 gi|345006389|ref|YP_004809242.1| - 1.6 8.7 4.2 14 5.7 2.9 2.0 1 1 0 1 1 1 0 RING-like domain HSP20 PF00011.16 gi|345006390|ref|YP_004809243.1| - 2.6e-05 23.9 0.0 5.7e-05 22.9 0.0 1.5 1 1 0 1 1 1 1 Hsp20/alpha crystallin family DAO PF01266.19 gi|345006391|ref|YP_004809244.1| - 4.8e-49 167.1 11.3 5.4e-49 166.9 7.8 1.0 1 0 0 1 1 1 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.1 gi|345006391|ref|YP_004809244.1| - 2.5e-06 27.4 1.3 1.3e-05 25.1 0.4 2.4 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Pyr_redox_2 PF07992.9 gi|345006391|ref|YP_004809244.1| - 2.6e-06 27.4 1.8 3.9e-05 23.6 0.0 2.6 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|345006391|ref|YP_004809244.1| - 3.4e-06 27.3 0.7 4.8e-05 23.6 0.2 2.9 3 1 0 3 3 2 1 Pyridine nucleotide-disulphide oxidoreductase ApbA PF02558.11 gi|345006391|ref|YP_004809244.1| - 7.6e-05 22.2 0.0 0.00015 21.2 0.0 1.5 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA 3HCDH_N PF02737.13 gi|345006391|ref|YP_004809244.1| - 9.3e-05 22.1 0.1 0.00018 21.2 0.1 1.5 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain FAD_binding_3 PF01494.14 gi|345006391|ref|YP_004809244.1| - 0.0001 21.4 0.4 0.00018 20.7 0.3 1.3 1 0 0 1 1 1 1 FAD binding domain HI0933_like PF03486.9 gi|345006391|ref|YP_004809244.1| - 0.00029 19.4 0.5 0.0014 17.1 0.4 1.8 2 0 0 2 2 2 1 HI0933-like protein Pyr_redox_3 PF13738.1 gi|345006391|ref|YP_004809244.1| - 0.00058 19.9 0.1 0.0034 17.4 0.0 2.1 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.17 gi|345006391|ref|YP_004809244.1| - 0.001 18.0 0.0 0.0014 17.5 0.0 1.3 1 0 0 1 1 1 1 Glucose inhibited division protein A NAD_Gly3P_dh_N PF01210.18 gi|345006391|ref|YP_004809244.1| - 0.0015 18.2 0.0 0.0023 17.6 0.0 1.3 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ThiF PF00899.16 gi|345006391|ref|YP_004809244.1| - 0.0033 17.2 0.1 0.0072 16.1 0.0 1.6 1 0 0 1 1 1 1 ThiF family NAD_binding_7 PF13241.1 gi|345006391|ref|YP_004809244.1| - 0.0039 17.4 0.1 0.0093 16.2 0.0 1.6 1 0 0 1 1 1 1 Putative NAD(P)-binding FAD_oxidored PF12831.2 gi|345006391|ref|YP_004809244.1| - 0.013 14.6 1.8 0.02 13.9 1.2 1.3 1 0 0 1 1 1 0 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|345006391|ref|YP_004809244.1| - 0.036 12.9 7.1 0.28 9.9 4.9 2.3 1 1 0 1 1 1 0 FAD binding domain UDPG_MGDP_dh_N PF03721.9 gi|345006391|ref|YP_004809244.1| - 0.037 13.4 0.0 0.074 12.4 0.0 1.5 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Thi4 PF01946.12 gi|345006391|ref|YP_004809244.1| - 0.039 13.0 0.2 0.076 12.0 0.1 1.5 1 0 0 1 1 1 0 Thi4 family 2-Hacid_dh_C PF02826.14 gi|345006391|ref|YP_004809244.1| - 0.096 11.8 0.0 0.19 10.9 0.0 1.4 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_10 PF13460.1 gi|345006391|ref|YP_004809244.1| - 0.18 11.7 2.7 1.1 9.2 0.8 2.4 2 1 0 2 2 2 0 NADH(P)-binding Bac_luciferase PF00296.15 gi|345006392|ref|YP_004809245.1| - 8e-05 21.9 3.8 0.00017 20.8 2.6 1.6 1 1 0 1 1 1 1 Luciferase-like monooxygenase NUDIX PF00293.23 gi|345006393|ref|YP_004809246.1| - 4.4e-19 68.4 0.1 6.4e-19 67.9 0.1 1.1 1 0 0 1 1 1 1 NUDIX domain Cpn60_TCP1 PF00118.19 gi|345006395|ref|YP_004809248.1| - 3.8e-147 490.8 4.3 4.3e-147 490.6 3.0 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family DUF4559 PF15112.1 gi|345006395|ref|YP_004809248.1| - 0.28 10.3 1.5 3.2 6.8 0.1 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4559) DHquinase_I PF01487.10 gi|345006397|ref|YP_004809250.1| - 2.7e-40 138.3 0.0 3.4e-40 138.0 0.0 1.1 1 0 0 1 1 1 1 Type I 3-dehydroquinase PTS-HPr PF00381.14 gi|345006397|ref|YP_004809250.1| - 0.0063 16.3 0.8 0.018 14.9 0.6 1.8 1 0 0 1 1 1 1 PTS HPr component phosphorylation site Peripla_BP_2 PF01497.13 gi|345006398|ref|YP_004809251.1| - 1.9e-26 92.6 0.0 2.3e-26 92.3 0.0 1.0 1 0 0 1 1 1 1 Periplasmic binding protein NTPase_I-T PF01931.13 gi|345006399|ref|YP_004809252.1| - 7.6e-40 136.3 0.0 8.4e-40 136.2 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF84 UPF0104 PF03706.8 gi|345006400|ref|YP_004809253.1| - 3.3e-37 128.3 30.4 4.8e-37 127.8 21.1 1.2 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0104) Glycos_transf_2 PF00535.21 gi|345006400|ref|YP_004809253.1| - 1.7e-23 83.1 0.0 2.7e-23 82.4 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|345006400|ref|YP_004809253.1| - 2.9e-11 43.6 0.2 1.2e-10 41.5 0.1 1.9 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.4 gi|345006400|ref|YP_004809253.1| - 1.8e-05 23.9 0.0 2.5e-05 23.5 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.1 gi|345006400|ref|YP_004809253.1| - 0.0025 18.1 0.0 0.0049 17.1 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase family 2 CAP59_mtransfer PF11735.3 gi|345006400|ref|YP_004809253.1| - 0.13 11.4 0.0 1.1 8.4 0.0 2.0 2 0 0 2 2 2 0 Cryptococcal mannosyltransferase 1 HTH_24 PF13412.1 gi|345006401|ref|YP_004809254.1| - 0.024 13.9 0.2 1.8 8.0 0.0 2.9 2 1 0 2 2 2 0 Winged helix-turn-helix DNA-binding zf-ribbon_3 PF13248.1 gi|345006402|ref|YP_004809255.1| - 2.6e-06 26.4 2.9 3.7e-06 25.9 2.0 1.3 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.2 gi|345006402|ref|YP_004809255.1| - 3.8e-05 23.4 0.5 4e-05 23.3 0.3 1.2 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|345006402|ref|YP_004809255.1| - 4.3e-05 22.8 3.3 6e-05 22.3 2.3 1.3 1 0 0 1 1 1 1 zinc-ribbon domain A2L_zn_ribbon PF08792.5 gi|345006402|ref|YP_004809255.1| - 0.039 13.4 4.6 0.083 12.3 3.2 1.6 1 1 0 1 1 1 0 A2L zinc ribbon domain HTH_20 PF12840.2 gi|345006403|ref|YP_004809256.1| - 1.9e-10 40.4 0.3 6.4e-06 25.8 0.1 2.3 2 0 0 2 2 2 2 Helix-turn-helix domain HTH_34 PF13601.1 gi|345006403|ref|YP_004809256.1| - 1.2e-07 31.6 0.0 0.012 15.6 0.0 2.4 2 0 0 2 2 2 2 Winged helix DNA-binding domain MarR_2 PF12802.2 gi|345006403|ref|YP_004809256.1| - 3.3e-07 29.8 0.2 1.6e-05 24.4 0.0 2.4 2 0 0 2 2 2 1 MarR family HTH_11 PF08279.7 gi|345006403|ref|YP_004809256.1| - 4.5e-07 29.4 0.0 7.5e-07 28.6 0.0 1.3 1 0 0 1 1 1 1 HTH domain HTH_24 PF13412.1 gi|345006403|ref|YP_004809256.1| - 5.2e-07 28.9 0.0 0.00049 19.4 0.0 2.2 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding HTH_5 PF01022.15 gi|345006403|ref|YP_004809256.1| - 8.5e-06 25.3 0.0 0.00031 20.3 0.0 2.2 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family MarR PF01047.17 gi|345006403|ref|YP_004809256.1| - 1.8e-05 24.3 0.0 9.1e-05 22.0 0.0 2.0 2 0 0 2 2 2 1 MarR family TrmB PF01978.14 gi|345006403|ref|YP_004809256.1| - 0.00017 21.1 0.0 0.0023 17.6 0.0 2.1 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_Crp_2 PF13545.1 gi|345006403|ref|YP_004809256.1| - 0.0011 18.7 0.0 0.0021 17.7 0.0 1.5 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_29 PF13551.1 gi|345006403|ref|YP_004809256.1| - 0.0014 18.7 0.4 0.27 11.3 0.0 2.4 2 1 0 2 2 2 1 Winged helix-turn helix HTH_36 PF13730.1 gi|345006403|ref|YP_004809256.1| - 0.0015 18.6 0.0 0.0043 17.1 0.0 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_IclR PF09339.5 gi|345006403|ref|YP_004809256.1| - 0.0028 17.1 1.0 0.029 13.9 0.3 2.6 2 1 0 2 2 2 1 IclR helix-turn-helix domain GntR PF00392.16 gi|345006403|ref|YP_004809256.1| - 0.017 14.5 0.1 0.042 13.2 0.0 1.7 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family HTH_AsnC-type PF13404.1 gi|345006403|ref|YP_004809256.1| - 0.019 14.4 0.1 0.058 12.9 0.1 1.9 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain Fe_dep_repress PF01325.14 gi|345006403|ref|YP_004809256.1| - 0.024 14.5 0.0 0.048 13.6 0.0 1.4 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_23 PF13384.1 gi|345006403|ref|YP_004809256.1| - 0.026 14.1 0.0 0.092 12.4 0.0 1.9 2 0 0 2 2 2 0 Homeodomain-like domain Rrf2 PF02082.15 gi|345006403|ref|YP_004809256.1| - 0.027 14.5 0.0 0.06 13.4 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator RP-C PF03428.8 gi|345006403|ref|YP_004809256.1| - 0.054 12.9 0.3 0.14 11.6 0.0 1.8 2 0 0 2 2 2 0 Replication protein C N-terminal domain HTH_DeoR PF08220.7 gi|345006403|ref|YP_004809256.1| - 0.096 12.2 0.0 0.17 11.4 0.0 1.4 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain HTH_10 PF04967.7 gi|345006403|ref|YP_004809256.1| - 0.1 12.2 0.1 0.34 10.5 0.0 1.9 2 0 0 2 2 2 0 HTH DNA binding domain Lact-deh-memb PF09330.6 gi|345006403|ref|YP_004809256.1| - 0.12 11.7 0.1 0.17 11.2 0.1 1.2 1 0 0 1 1 1 0 D-lactate dehydrogenase, membrane binding NfeD PF01957.13 gi|345006405|ref|YP_004809258.1| - 2e-15 57.1 0.6 2.7e-15 56.7 0.4 1.1 1 0 0 1 1 1 1 NfeD-like C-terminal, partner-binding DUF4131 PF13567.1 gi|345006405|ref|YP_004809258.1| - 0.056 12.8 0.5 0.075 12.4 0.4 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) DUF4307 PF14155.1 gi|345006405|ref|YP_004809258.1| - 0.25 11.1 1.2 1.1 9.0 0.0 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF4307) YtpI PF14007.1 gi|345006405|ref|YP_004809258.1| - 0.27 11.2 1.3 0.43 10.5 0.9 1.3 1 0 0 1 1 1 0 YtpI-like protein Band_7 PF01145.20 gi|345006406|ref|YP_004809259.1| - 3.4e-38 131.3 5.7 3.4e-38 131.3 3.9 2.1 3 0 0 3 3 3 1 SPFH domain / Band 7 family Band_7_1 PF13421.1 gi|345006406|ref|YP_004809259.1| - 3.7e-05 23.3 0.4 9e-05 22.0 0.3 1.6 1 1 0 1 1 1 1 SPFH domain-Band 7 family YkyA PF10368.4 gi|345006406|ref|YP_004809259.1| - 10 5.4 16.2 0.82 8.9 3.7 2.4 2 0 0 2 2 2 0 Putative cell-wall binding lipoprotein SBP_bac_6 PF13343.1 gi|345006407|ref|YP_004809260.1| - 8.4e-20 71.1 0.0 1.3e-19 70.4 0.0 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.1 gi|345006407|ref|YP_004809260.1| - 1.4e-16 61.0 0.6 2e-16 60.5 0.4 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.20 gi|345006407|ref|YP_004809260.1| - 1.8e-09 37.8 0.8 2.4e-09 37.3 0.6 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.1 gi|345006407|ref|YP_004809260.1| - 1.1e-06 28.4 0.0 2e-06 27.5 0.0 1.4 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein BPD_transp_1 PF00528.17 gi|345006408|ref|YP_004809261.1| - 1.3e-31 109.6 30.8 3.4e-17 62.5 7.2 3.1 4 0 0 4 4 4 2 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.22 gi|345006409|ref|YP_004809262.1| - 2.7e-36 124.8 0.0 9.3e-36 123.1 0.0 1.8 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.1 gi|345006409|ref|YP_004809262.1| - 1.2e-11 45.1 0.0 6.7e-07 29.5 0.0 2.1 1 1 0 2 2 2 2 AAA domain AAA_22 PF13401.1 gi|345006409|ref|YP_004809262.1| - 1.7e-05 24.9 0.1 5.3e-05 23.3 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA PF00004.24 gi|345006409|ref|YP_004809262.1| - 3.3e-05 24.0 0.1 0.018 15.2 0.0 2.2 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) SMC_N PF02463.14 gi|345006409|ref|YP_004809262.1| - 0.00039 19.7 0.0 0.037 13.2 0.0 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain TOBE_2 PF08402.5 gi|345006409|ref|YP_004809262.1| - 0.00044 20.1 4.0 0.0011 18.9 0.0 3.4 2 1 1 3 3 3 1 TOBE domain AAA_25 PF13481.1 gi|345006409|ref|YP_004809262.1| - 0.0027 17.1 0.2 0.011 15.0 0.1 2.0 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|345006409|ref|YP_004809262.1| - 0.0033 16.5 0.0 0.021 13.9 0.0 1.8 2 0 0 2 2 2 1 AAA ATPase domain AAA_16 PF13191.1 gi|345006409|ref|YP_004809262.1| - 0.019 14.9 2.8 0.078 12.9 2.0 2.0 1 1 0 1 1 1 0 AAA ATPase domain MMR_HSR1 PF01926.18 gi|345006409|ref|YP_004809262.1| - 0.03 14.2 0.0 0.073 13.0 0.0 1.7 2 0 0 2 2 2 0 50S ribosome-binding GTPase AAA_30 PF13604.1 gi|345006409|ref|YP_004809262.1| - 0.03 13.8 0.2 0.16 11.4 0.0 2.0 2 0 0 2 2 2 0 AAA domain Rad17 PF03215.10 gi|345006409|ref|YP_004809262.1| - 0.03 12.9 0.0 0.043 12.5 0.0 1.1 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein Zeta_toxin PF06414.7 gi|345006409|ref|YP_004809262.1| - 0.033 13.2 0.0 0.067 12.2 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin AAA_14 PF13173.1 gi|345006409|ref|YP_004809262.1| - 0.039 13.8 0.0 0.1 12.4 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_29 PF13555.1 gi|345006409|ref|YP_004809262.1| - 0.06 12.8 0.1 0.14 11.6 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain SRP54 PF00448.17 gi|345006409|ref|YP_004809262.1| - 0.069 12.5 0.1 0.71 9.2 0.0 2.2 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain AAA_33 PF13671.1 gi|345006409|ref|YP_004809262.1| - 0.072 12.9 1.1 0.24 11.2 0.8 1.9 1 1 0 1 1 1 0 AAA domain DUF258 PF03193.11 gi|345006409|ref|YP_004809262.1| - 0.073 12.2 0.0 0.13 11.3 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 SbcCD_C PF13558.1 gi|345006409|ref|YP_004809262.1| - 0.11 12.3 0.2 0.72 9.8 0.2 2.1 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_24 PF13479.1 gi|345006409|ref|YP_004809262.1| - 0.12 11.8 0.2 0.95 9.0 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_28 PF13521.1 gi|345006409|ref|YP_004809262.1| - 0.13 12.1 0.6 0.35 10.8 0.1 1.9 2 0 0 2 2 2 0 AAA domain NB-ARC PF00931.17 gi|345006409|ref|YP_004809262.1| - 0.16 10.8 0.0 0.24 10.2 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain AAA_23 PF13476.1 gi|345006409|ref|YP_004809262.1| - 0.21 11.9 0.1 0.54 10.5 0.0 1.7 2 0 0 2 2 2 0 AAA domain SAM_adeno_trans PF01887.11 gi|345006410|ref|YP_004809263.1| - 6.4e-78 261.3 0.5 7.2e-78 261.1 0.3 1.0 1 0 0 1 1 1 1 S-adenosyl-l-methionine hydroxide adenosyltransferase GYD PF08734.6 gi|345006411|ref|YP_004809264.1| - 1.1e-08 34.6 0.1 1.3e-08 34.4 0.0 1.1 1 0 0 1 1 1 1 GYD domain M20_dimer PF07687.9 gi|345006412|ref|YP_004809265.1| - 4.9e-06 26.2 0.1 1.6e-05 24.6 0.0 1.8 1 1 0 1 1 1 1 Peptidase dimerisation domain Peptidase_M20 PF01546.23 gi|345006412|ref|YP_004809265.1| - 3.1e-05 23.5 11.5 0.00012 21.6 7.1 2.2 1 1 1 2 2 2 1 Peptidase family M20/M25/M40 DEAD PF00270.24 gi|345006414|ref|YP_004809267.1| - 1.8e-26 92.6 0.0 3.4e-26 91.7 0.0 1.4 1 0 0 1 1 1 1 DEAD/DEAH box helicase HHH_5 PF14520.1 gi|345006414|ref|YP_004809267.1| - 2e-06 27.8 3.1 2.1e-06 27.8 0.3 2.5 2 0 0 2 2 2 1 Helix-hairpin-helix domain Helicase_C PF00271.26 gi|345006414|ref|YP_004809267.1| - 1.8e-05 24.4 0.0 4.2e-05 23.3 0.0 1.6 1 0 0 1 1 1 1 Helicase conserved C-terminal domain DNA_pol_lambd_f PF10391.4 gi|345006414|ref|YP_004809267.1| - 0.00036 20.0 0.0 0.00096 18.6 0.0 1.7 1 0 0 1 1 1 1 Fingers domain of DNA polymerase lambda ResIII PF04851.10 gi|345006414|ref|YP_004809267.1| - 0.0027 17.5 0.0 0.0065 16.3 0.0 1.7 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit HHH PF00633.18 gi|345006414|ref|YP_004809267.1| - 0.0062 16.1 0.1 0.6 9.9 0.0 3.7 3 0 0 3 3 3 1 Helix-hairpin-helix motif CGI-121 PF08617.5 gi|345006415|ref|YP_004809268.1| - 6e-21 74.7 0.0 6.8e-21 74.6 0.0 1.0 1 0 0 1 1 1 1 Kinase binding protein CGI-121 Pro_Al_protease PF02983.9 gi|345006415|ref|YP_004809268.1| - 4.8 7.2 6.5 1.3 9.0 0.3 2.9 3 0 0 3 3 3 0 Alpha-lytic protease prodomain HNH PF01844.18 gi|345006416|ref|YP_004809269.1| - 0.0077 16.0 19.1 1.3 8.9 3.0 3.9 2 2 0 2 2 2 2 HNH endonuclease NinG PF05766.7 gi|345006416|ref|YP_004809269.1| - 0.046 13.4 12.3 1.4 8.6 2.3 2.5 1 1 1 2 2 2 0 Bacteriophage Lambda NinG protein Fer4_18 PF13746.1 gi|345006416|ref|YP_004809269.1| - 2.8 8.4 14.2 0.7 10.3 0.1 3.5 3 1 0 3 3 3 0 4Fe-4S dicluster domain Cytochrom_C PF00034.16 gi|345006416|ref|YP_004809269.1| - 4.4 8.2 7.4 14 6.5 0.3 3.1 2 1 0 2 2 2 0 Cytochrome c IMP_cyclohyd PF07826.6 gi|345006417|ref|YP_004809270.1| - 3.1e-59 199.6 0.0 3.6e-59 199.4 0.0 1.0 1 0 0 1 1 1 1 IMP cyclohydrolase-like protein Metallophos_2 PF12850.2 gi|345006418|ref|YP_004809271.1| - 3.9e-31 107.9 0.0 4.8e-31 107.6 0.0 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|345006418|ref|YP_004809271.1| - 3.5e-08 33.0 0.1 4.9e-08 32.6 0.1 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Ribonuc_red_lgC PF02867.10 gi|345006419|ref|YP_004809272.1| - 4.4e-192 639.3 0.0 5.3e-192 639.1 0.0 1.0 1 0 0 1 1 1 1 Ribonucleotide reductase, barrel domain Ribonuc_red_lgN PF00317.16 gi|345006419|ref|YP_004809272.1| - 6.1e-22 77.2 0.1 2.1e-21 75.4 0.0 2.0 1 0 0 1 1 1 1 Ribonucleotide reductase, all-alpha domain Ribonuc_red_sm PF00268.16 gi|345006420|ref|YP_004809273.1| - 5e-43 147.1 0.0 1.2e-42 145.8 0.0 1.5 1 1 0 1 1 1 1 Ribonucleotide reductase, small chain GDPD_2 PF13653.1 gi|345006420|ref|YP_004809273.1| - 0.037 14.2 0.6 6.9 7.0 0.0 3.5 3 0 0 3 3 3 0 Glycerophosphoryl diester phosphodiesterase family AurF PF11583.3 gi|345006420|ref|YP_004809273.1| - 0.1 11.4 0.5 0.49 9.2 0.0 1.9 2 0 0 2 2 2 0 P-aminobenzoate N-oxygenase AurF 4HBT PF03061.17 gi|345006421|ref|YP_004809274.1| - 8.7e-14 51.4 0.4 1.3e-13 50.8 0.3 1.3 1 0 0 1 1 1 1 Thioesterase superfamily 4HBT_2 PF13279.1 gi|345006421|ref|YP_004809274.1| - 0.081 13.3 0.0 0.091 13.2 0.0 1.1 1 0 0 1 1 1 0 Thioesterase-like superfamily AA_kinase PF00696.23 gi|345006422|ref|YP_004809275.1| - 2e-49 168.3 3.1 6.3e-49 166.7 0.8 2.0 2 0 0 2 2 2 1 Amino acid kinase family ACT_7 PF13840.1 gi|345006422|ref|YP_004809275.1| - 2.7e-13 49.2 0.0 1.9e-07 30.4 0.0 2.5 2 0 0 2 2 2 2 ACT domain ACT PF01842.20 gi|345006422|ref|YP_004809275.1| - 1.1e-11 43.9 0.3 5.1e-06 25.8 0.0 3.1 2 0 0 2 2 2 2 ACT domain ACT_4 PF13291.1 gi|345006422|ref|YP_004809275.1| - 0.00086 19.6 0.1 0.081 13.2 0.0 2.6 2 0 0 2 2 2 1 ACT domain TctC PF03401.9 gi|345006422|ref|YP_004809275.1| - 0.017 14.0 0.0 0.03 13.2 0.0 1.3 1 0 0 1 1 1 0 Tripartite tricarboxylate transporter family receptor ACT_6 PF13740.1 gi|345006422|ref|YP_004809275.1| - 0.028 14.1 0.6 6.1 6.6 0.1 2.9 3 0 0 3 3 3 0 ACT domain EPO_TPO PF00758.13 gi|345006422|ref|YP_004809275.1| - 0.15 11.7 0.0 0.24 11.0 0.0 1.3 1 0 0 1 1 1 0 Erythropoietin/thrombopoietin MFS_1 PF07690.11 gi|345006424|ref|YP_004809277.1| - 3.7e-33 114.6 42.1 3.7e-33 114.6 29.2 1.3 1 1 0 1 1 1 1 Major Facilitator Superfamily TrkH PF02386.11 gi|345006425|ref|YP_004809278.1| - 3.6e-42 144.2 14.6 6.9e-42 143.2 6.8 2.1 2 0 0 2 2 2 2 Cation transport protein Citrate_synt PF00285.16 gi|345006426|ref|YP_004809279.1| - 4.9e-131 436.6 0.0 5.5e-131 436.5 0.0 1.0 1 0 0 1 1 1 1 Citrate synthase TrkA_C PF02080.16 gi|345006427|ref|YP_004809280.1| - 2.2e-28 97.6 0.3 7.5e-15 54.2 0.1 2.6 2 0 0 2 2 2 2 TrkA-C domain PhoU PF01895.14 gi|345006427|ref|YP_004809280.1| - 3e-13 50.0 2.9 6.4e-07 29.7 0.6 2.4 2 0 0 2 2 2 2 PhoU domain Far-17a_AIG1 PF04750.9 gi|345006428|ref|YP_004809281.1| - 0.016 14.3 0.3 0.018 14.2 0.2 1.1 1 0 0 1 1 1 0 FAR-17a/AIG1-like protein DUF165 PF02592.10 gi|345006428|ref|YP_004809281.1| - 0.07 13.3 0.4 0.085 13.0 0.3 1.1 1 0 0 1 1 1 0 Uncharacterized ACR, YhhQ family COG1738 SKG6 PF08693.5 gi|345006428|ref|YP_004809281.1| - 7.6 5.9 6.0 0.37 10.1 0.2 1.8 2 0 0 2 2 2 0 Transmembrane alpha-helix domain DUF99 PF01949.11 gi|345006429|ref|YP_004809282.1| - 1.2e-39 135.3 0.0 1.1e-33 115.8 0.0 2.0 2 0 0 2 2 2 2 Protein of unknown function DUF99 DUF162 PF02589.10 gi|345006431|ref|YP_004809284.1| - 1.1e-19 70.7 0.3 1.2e-19 70.5 0.2 1.1 1 0 0 1 1 1 1 Uncharacterised ACR, YkgG family COG1556 DUF162 PF02589.10 gi|345006432|ref|YP_004809285.1| - 2.7e-38 131.3 0.4 5.8e-38 130.2 0.3 1.6 1 0 0 1 1 1 1 Uncharacterised ACR, YkgG family COG1556 Fer4_8 PF13183.1 gi|345006432|ref|YP_004809285.1| - 9.7e-10 38.3 3.2 2.2e-09 37.2 2.2 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|345006432|ref|YP_004809285.1| - 5.8e-08 33.0 5.7 3e-05 24.3 0.4 2.6 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|345006432|ref|YP_004809285.1| - 7.3e-08 32.0 2.5 0.0013 18.4 0.2 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|345006432|ref|YP_004809285.1| - 2.2e-06 27.8 0.8 5.9e-06 26.5 0.6 1.8 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|345006432|ref|YP_004809285.1| - 3.6e-06 27.2 5.3 2.7e-05 24.4 3.9 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain CCG PF02754.11 gi|345006432|ref|YP_004809285.1| - 9.9e-06 25.4 0.2 3.1e-05 23.8 0.2 1.9 1 0 0 1 1 1 1 Cysteine-rich domain Fer4_2 PF12797.2 gi|345006432|ref|YP_004809285.1| - 2.3e-05 24.0 11.3 0.0027 17.5 1.8 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|345006432|ref|YP_004809285.1| - 5.9e-05 22.8 6.8 0.0033 17.2 0.5 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.22 gi|345006432|ref|YP_004809285.1| - 6.2e-05 22.4 15.8 0.00085 18.8 2.9 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|345006432|ref|YP_004809285.1| - 9.5e-05 22.1 13.1 0.00046 19.9 1.9 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|345006432|ref|YP_004809285.1| - 0.00013 22.1 11.6 0.0043 17.2 8.7 2.5 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|345006432|ref|YP_004809285.1| - 0.0014 18.7 15.2 0.021 15.1 3.1 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_3 PF12798.2 gi|345006432|ref|YP_004809285.1| - 0.01 16.3 17.6 0.024 15.1 3.6 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_20 PF14691.1 gi|345006432|ref|YP_004809285.1| - 0.037 13.6 2.0 0.098 12.2 0.1 2.4 2 0 0 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_16 PF13484.1 gi|345006432|ref|YP_004809285.1| - 0.059 14.1 8.6 0.28 11.9 6.1 2.1 1 1 1 2 2 2 0 4Fe-4S double cluster binding domain Fer4_15 PF13459.1 gi|345006432|ref|YP_004809285.1| - 0.13 12.8 5.1 0.56 10.8 0.1 3.4 2 0 0 2 2 2 0 4Fe-4S single cluster domain Lactamase_B PF00753.22 gi|345006433|ref|YP_004809286.1| - 1.2e-18 67.4 6.6 1.9e-18 66.8 4.5 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|345006433|ref|YP_004809286.1| - 0.00012 21.6 1.7 0.00024 20.7 1.2 1.5 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.1 gi|345006433|ref|YP_004809286.1| - 0.00046 19.9 0.2 0.00074 19.2 0.1 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain UL11 PF11094.3 gi|345006433|ref|YP_004809286.1| - 0.49 10.2 5.0 21 5.0 0.1 3.8 4 0 0 4 4 4 0 Membrane-associated tegument protein Ribosomal_L40e PF01020.12 gi|345006434|ref|YP_004809287.1| - 2.8e-06 26.8 4.8 3.1e-06 26.6 3.3 1.1 1 0 0 1 1 1 1 Ribosomal L40e family zf-DHHC PF01529.15 gi|345006434|ref|YP_004809287.1| - 0.0012 18.3 0.9 0.0012 18.2 0.6 1.0 1 0 0 1 1 1 1 DHHC palmitoyltransferase DZR PF12773.2 gi|345006434|ref|YP_004809287.1| - 0.0014 18.4 1.3 0.0015 18.2 0.9 1.2 1 0 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|345006434|ref|YP_004809287.1| - 0.049 12.8 1.7 0.063 12.5 1.2 1.2 1 0 0 1 1 1 0 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|345006434|ref|YP_004809287.1| - 0.064 12.7 2.4 0.093 12.2 1.7 1.3 1 0 0 1 1 1 0 zinc-ribbon domain Toxin_5 PF05294.8 gi|345006434|ref|YP_004809287.1| - 0.1 12.8 2.4 0.12 12.5 1.7 1.2 1 0 0 1 1 1 0 Scorpion short toxin DNA_RNApol_7kD PF03604.8 gi|345006434|ref|YP_004809287.1| - 0.42 10.1 5.8 0.84 9.1 3.6 1.8 2 1 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit Ribosomal_L37e PF01907.14 gi|345006434|ref|YP_004809287.1| - 0.96 9.3 4.2 1.3 8.8 2.9 1.4 1 1 0 1 1 1 0 Ribosomal protein L37e RNA_POL_M_15KD PF02150.11 gi|345006434|ref|YP_004809287.1| - 1.4 8.6 5.6 6.7 6.4 3.8 2.0 1 1 0 1 1 1 0 RNA polymerases M/15 Kd subunit Thioredoxin PF00085.15 gi|345006435|ref|YP_004809288.1| - 2.5e-21 75.3 0.0 2.8e-21 75.1 0.0 1.0 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_8 PF13905.1 gi|345006435|ref|YP_004809288.1| - 3e-07 30.4 0.0 2.6e-05 24.2 0.0 2.0 1 1 1 2 2 2 2 Thioredoxin-like Thioredoxin_2 PF13098.1 gi|345006435|ref|YP_004809288.1| - 6.1e-07 29.6 0.1 9.5e-06 25.7 0.1 2.0 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_3 PF13192.1 gi|345006435|ref|YP_004809288.1| - 2.9e-06 26.9 0.0 3e-06 26.9 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin domain Thioredoxin_9 PF14595.1 gi|345006435|ref|YP_004809288.1| - 2.5e-05 23.8 0.0 2.9e-05 23.6 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin Redoxin PF08534.5 gi|345006435|ref|YP_004809288.1| - 7.8e-05 22.2 0.2 0.016 14.7 0.0 2.0 1 1 1 2 2 2 2 Redoxin Glutaredoxin PF00462.19 gi|345006435|ref|YP_004809288.1| - 0.00014 21.7 0.1 0.00029 20.7 0.0 1.6 1 1 1 2 2 2 1 Glutaredoxin DUF836 PF05768.9 gi|345006435|ref|YP_004809288.1| - 0.00051 20.2 0.1 0.0006 20.0 0.0 1.1 1 0 0 1 1 1 1 Glutaredoxin-like domain (DUF836) DSBA PF01323.15 gi|345006435|ref|YP_004809288.1| - 0.0009 18.8 0.1 0.021 14.4 0.0 1.9 1 1 1 2 2 2 1 DSBA-like thioredoxin domain AhpC-TSA PF00578.16 gi|345006435|ref|YP_004809288.1| - 0.0012 18.5 0.2 0.042 13.5 0.1 1.9 1 1 1 2 2 2 2 AhpC/TSA family Thioredoxin_5 PF13743.1 gi|345006435|ref|YP_004809288.1| - 0.0044 16.6 0.1 0.0046 16.5 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_7 PF13899.1 gi|345006435|ref|YP_004809288.1| - 0.01 15.8 0.0 0.02 14.9 0.0 1.4 1 0 0 1 1 1 0 Thioredoxin-like HyaE PF07449.6 gi|345006435|ref|YP_004809288.1| - 0.047 13.5 0.0 0.057 13.3 0.0 1.2 1 0 0 1 1 1 0 Hydrogenase-1 expression protein HyaE Sec61_beta PF03911.11 gi|345006436|ref|YP_004809289.1| - 9.9e-09 34.8 0.1 1.2e-08 34.5 0.0 1.1 1 0 0 1 1 1 1 Sec61beta family FXa_inhibition PF14670.1 gi|345006437|ref|YP_004809290.1| - 0.38 10.8 6.7 2.2 8.4 4.7 2.3 1 1 0 1 1 1 0 Coagulation Factor Xa inhibitory site SNO PF01174.14 gi|345006438|ref|YP_004809291.1| - 9e-55 185.2 0.0 1.1e-54 184.9 0.0 1.0 1 0 0 1 1 1 1 SNO glutamine amidotransferase family GATase_3 PF07685.9 gi|345006438|ref|YP_004809291.1| - 9.8e-10 38.2 0.0 3e-09 36.6 0.0 1.7 2 0 0 2 2 2 1 CobB/CobQ-like glutamine amidotransferase domain Peptidase_S51 PF03575.12 gi|345006438|ref|YP_004809291.1| - 2.8e-05 23.9 0.0 4e-05 23.3 0.0 1.2 1 0 0 1 1 1 1 Peptidase family S51 DJ-1_PfpI PF01965.19 gi|345006438|ref|YP_004809291.1| - 0.0018 17.7 0.0 0.0028 17.1 0.0 1.4 1 0 0 1 1 1 1 DJ-1/PfpI family GATase PF00117.23 gi|345006438|ref|YP_004809291.1| - 0.0028 17.1 0.0 0.0056 16.1 0.0 1.5 1 1 0 1 1 1 1 Glutamine amidotransferase class-I BPL_N PF09825.4 gi|345006438|ref|YP_004809291.1| - 0.0084 14.9 0.0 0.053 12.3 0.0 2.0 2 1 0 2 2 2 1 Biotin-protein ligase, N terminal DUF4066 PF13278.1 gi|345006438|ref|YP_004809291.1| - 0.034 13.4 0.1 0.052 12.8 0.1 1.3 1 0 0 1 1 1 0 Putative amidotransferase PRA-PH PF01503.12 gi|345006439|ref|YP_004809292.1| - 7.2e-15 55.0 1.7 8.2e-15 54.8 1.2 1.1 1 0 0 1 1 1 1 Phosphoribosyl-ATP pyrophosphohydrolase MazG PF03819.12 gi|345006439|ref|YP_004809292.1| - 0.0019 18.0 3.6 0.0033 17.3 2.5 1.3 1 0 0 1 1 1 1 MazG nucleotide pyrophosphohydrolase domain F420_oxidored PF03807.12 gi|345006440|ref|YP_004809293.1| - 4.8e-20 71.7 0.1 8.5e-20 70.9 0.1 1.4 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_10 PF13460.1 gi|345006440|ref|YP_004809293.1| - 1.6e-06 28.2 1.2 2e-06 27.9 0.5 1.4 1 1 0 1 1 1 1 NADH(P)-binding NAD_Gly3P_dh_N PF01210.18 gi|345006440|ref|YP_004809293.1| - 6e-06 26.0 0.0 1e-05 25.3 0.0 1.3 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ApbA PF02558.11 gi|345006440|ref|YP_004809293.1| - 1e-05 25.0 0.0 1.4e-05 24.6 0.0 1.2 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA Saccharop_dh PF03435.13 gi|345006440|ref|YP_004809293.1| - 3.4e-05 22.9 0.1 5.4e-05 22.3 0.1 1.3 1 0 0 1 1 1 1 Saccharopine dehydrogenase Semialdhyde_dh PF01118.19 gi|345006440|ref|YP_004809293.1| - 0.0001 22.5 0.3 0.00022 21.4 0.1 1.7 1 1 1 2 2 2 1 Semialdehyde dehydrogenase, NAD binding domain adh_short PF00106.20 gi|345006440|ref|YP_004809293.1| - 0.00054 19.9 5.4 0.0009 19.1 0.3 2.2 2 0 0 2 2 2 1 short chain dehydrogenase PDH PF02153.12 gi|345006440|ref|YP_004809293.1| - 0.0018 17.2 0.4 0.0034 16.3 0.3 1.6 1 1 0 1 1 1 1 Prephenate dehydrogenase KR PF08659.5 gi|345006440|ref|YP_004809293.1| - 0.0057 16.3 0.5 0.0097 15.5 0.1 1.5 2 0 0 2 2 2 1 KR domain IlvN PF07991.7 gi|345006440|ref|YP_004809293.1| - 0.011 15.1 0.2 0.1 11.9 0.1 2.2 2 1 0 2 2 2 0 Acetohydroxy acid isomeroreductase, catalytic domain Ldh_1_N PF00056.18 gi|345006440|ref|YP_004809293.1| - 0.073 12.9 0.1 0.13 12.0 0.1 1.4 1 0 0 1 1 1 0 lactate/malate dehydrogenase, NAD binding domain HAD_2 PF13419.1 gi|345006441|ref|YP_004809294.1| - 3.6e-14 53.3 2.0 6.6e-12 45.9 1.4 2.7 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|345006441|ref|YP_004809294.1| - 3.5e-07 30.8 4.4 3.5e-07 30.8 3.0 2.1 2 1 0 2 2 2 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|345006441|ref|YP_004809294.1| - 0.00011 21.8 2.2 0.00022 20.8 0.7 2.2 2 1 0 2 2 2 1 HAD-hyrolase-like Flagellin_IN PF07196.8 gi|345006441|ref|YP_004809294.1| - 0.25 11.3 3.4 0.26 11.3 0.1 2.3 2 0 0 2 2 2 0 Flagellin hook IN motif UPF0146 PF03686.8 gi|345006442|ref|YP_004809295.1| - 1.5e-21 76.5 0.0 1.9e-21 76.1 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0146) DUF1471 PF07338.8 gi|345006442|ref|YP_004809295.1| - 0.027 14.1 0.0 0.045 13.3 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1471) Methyltransf_23 PF13489.1 gi|345006442|ref|YP_004809295.1| - 0.041 13.6 0.0 0.05 13.3 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain Peptidase_M54 PF07998.6 gi|345006443|ref|YP_004809296.1| - 3.1e-22 79.3 0.0 3.8e-22 79.0 0.0 1.1 1 0 0 1 1 1 1 Peptidase family M54 Reprolysin_2 PF13574.1 gi|345006443|ref|YP_004809296.1| - 6.5e-07 29.5 0.0 7.5e-07 29.3 0.0 1.1 1 0 0 1 1 1 1 Metallo-peptidase family M12B Reprolysin-like Reprolysin_3 PF13582.1 gi|345006443|ref|YP_004809296.1| - 1.2e-06 29.0 0.0 1.6e-06 28.6 0.0 1.3 1 0 0 1 1 1 1 Metallo-peptidase family M12B Reprolysin-like Reprolysin_4 PF13583.1 gi|345006443|ref|YP_004809296.1| - 3.7e-06 26.6 0.0 4.5e-06 26.3 0.0 1.1 1 0 0 1 1 1 1 Metallo-peptidase family M12B Reprolysin-like Reprolysin_5 PF13688.1 gi|345006443|ref|YP_004809296.1| - 1.8e-05 24.7 0.0 1.9e-05 24.7 0.0 1.1 1 0 0 1 1 1 1 Metallo-peptidase family M12 Peptidase_M10 PF00413.19 gi|345006443|ref|YP_004809296.1| - 0.00055 19.6 0.0 0.0006 19.5 0.0 1.2 1 0 0 1 1 1 1 Matrixin Peptidase_M66 PF10462.4 gi|345006443|ref|YP_004809296.1| - 0.00093 18.1 0.0 0.0012 17.8 0.0 1.2 1 0 0 1 1 1 1 Peptidase M66 Reprolysin PF01421.14 gi|345006443|ref|YP_004809296.1| - 0.0056 16.2 0.0 0.0069 15.9 0.0 1.2 1 0 0 1 1 1 1 Reprolysin (M12B) family zinc metalloprotease DUF1025 PF06262.6 gi|345006443|ref|YP_004809296.1| - 0.0057 16.4 0.0 0.012 15.3 0.0 1.5 1 0 0 1 1 1 1 Possibl zinc metallo-peptidase Metallopep PF12044.3 gi|345006443|ref|YP_004809296.1| - 0.034 12.5 0.2 0.048 12.1 0.1 1.2 1 0 0 1 1 1 0 Putative peptidase family Peptidase_M43 PF05572.8 gi|345006443|ref|YP_004809296.1| - 0.042 13.4 0.0 0.053 13.1 0.0 1.3 1 0 0 1 1 1 0 Pregnancy-associated plasma protein-A ABC2_membrane_3 PF12698.2 gi|345006444|ref|YP_004809297.1| - 2.4 7.1 6.7 3 6.7 4.7 1.2 1 0 0 1 1 1 0 ABC-2 family transporter protein MNHE PF01899.11 gi|345006444|ref|YP_004809297.1| - 7 6.2 12.0 3.9 7.0 4.6 2.0 2 0 0 2 2 2 0 Na+/H+ ion antiporter subunit Ala_racemase_N PF01168.15 gi|345006445|ref|YP_004809298.1| - 5.5e-26 91.4 1.0 7.5e-26 91.0 0.7 1.1 1 0 0 1 1 1 1 Alanine racemase, N-terminal domain D-ser_dehydrat PF14031.1 gi|345006445|ref|YP_004809298.1| - 2.3e-19 69.3 0.0 6e-19 68.0 0.0 1.7 1 0 0 1 1 1 1 Putative serine dehydratase domain Lactonase PF10282.4 gi|345006446|ref|YP_004809299.1| - 1e-11 44.5 0.2 0.0019 17.3 0.0 4.1 1 1 2 3 3 3 3 Lactonase, 7-bladed beta-propeller NHL PF01436.16 gi|345006446|ref|YP_004809299.1| - 1.8e-10 40.2 0.6 0.0025 17.6 0.0 4.7 4 0 0 4 4 4 2 NHL repeat SGL PF08450.7 gi|345006446|ref|YP_004809299.1| - 7.3e-07 28.8 0.2 0.017 14.4 0.0 2.7 3 0 0 3 3 3 2 SMP-30/Gluconolaconase/LRE-like region Cytochrom_D1 PF02239.11 gi|345006446|ref|YP_004809299.1| - 5.4e-06 24.9 0.0 0.0021 16.4 0.0 3.5 1 1 0 1 1 1 1 Cytochrome D1 heme domain PQQ_2 PF13360.1 gi|345006446|ref|YP_004809299.1| - 0.09 12.2 0.1 0.83 9.0 0.0 2.5 1 1 1 2 2 2 0 PQQ-like domain PQQ PF01011.16 gi|345006446|ref|YP_004809299.1| - 0.1 12.1 0.0 33 4.2 0.0 3.8 4 1 1 5 5 5 0 PQQ enzyme repeat SSF PF00474.12 gi|345006448|ref|YP_004809301.1| - 6.3e-17 61.3 32.3 8.7e-17 60.8 22.4 1.2 1 0 0 1 1 1 1 Sodium:solute symporter family Cyclase PF04199.8 gi|345006449|ref|YP_004809302.1| - 1.1e-26 93.5 0.0 1.5e-26 93.1 0.0 1.2 1 0 0 1 1 1 1 Putative cyclase Arginase PF00491.16 gi|345006450|ref|YP_004809303.1| - 1.2e-74 251.1 3.7 1.5e-74 250.7 2.6 1.1 1 0 0 1 1 1 1 Arginase family DUF1173 PF06666.6 gi|345006450|ref|YP_004809303.1| - 0.032 13.0 0.0 0.044 12.6 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1173) DUF1445 PF07286.7 gi|345006450|ref|YP_004809303.1| - 0.073 12.7 0.0 0.14 11.7 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1445) Aminotran_3 PF00202.16 gi|345006451|ref|YP_004809304.1| - 8.2e-107 356.9 0.0 1e-106 356.6 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-III DUF128 PF01995.11 gi|345006452|ref|YP_004809305.1| - 1.7e-18 66.4 0.0 2.5e-18 65.8 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF128 HTH_12 PF08461.5 gi|345006452|ref|YP_004809305.1| - 1.7e-11 43.6 0.2 5.4e-11 42.0 0.1 1.9 2 0 0 2 2 2 1 Ribonuclease R winged-helix domain Ribosomal_S19e PF01090.14 gi|345006452|ref|YP_004809305.1| - 0.001 18.5 0.0 0.0039 16.6 0.0 1.9 2 0 0 2 2 2 1 Ribosomal protein S19e HTH_Tnp_Tc3_2 PF01498.13 gi|345006452|ref|YP_004809305.1| - 0.048 13.7 0.0 0.12 12.4 0.0 1.7 2 0 0 2 2 2 0 Transposase AhpC-TSA PF00578.16 gi|345006453|ref|YP_004809306.1| - 9e-21 73.8 0.0 1.2e-20 73.3 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.5 gi|345006453|ref|YP_004809306.1| - 3.3e-12 46.1 0.0 4.4e-12 45.7 0.0 1.1 1 0 0 1 1 1 1 Redoxin AhpC-TSA_2 PF13911.1 gi|345006453|ref|YP_004809306.1| - 7.6e-05 22.6 0.0 0.00027 20.8 0.0 1.7 1 1 1 2 2 2 1 AhpC/TSA antioxidant enzyme Thioredoxin_8 PF13905.1 gi|345006453|ref|YP_004809306.1| - 0.051 13.6 0.0 0.1 12.7 0.0 1.5 1 1 0 1 1 1 0 Thioredoxin-like UbiA PF01040.13 gi|345006454|ref|YP_004809307.1| - 9.5e-18 64.3 35.1 2.4e-17 62.9 24.1 1.9 1 1 0 1 1 1 1 UbiA prenyltransferase family DUF547 PF04784.9 gi|345006455|ref|YP_004809308.1| - 2.6e-24 85.3 0.0 3.4e-24 84.9 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function, DUF547 Oxidored_FMN PF00724.15 gi|345006456|ref|YP_004809309.1| - 5.6e-70 236.0 0.0 6.4e-70 235.8 0.0 1.0 1 0 0 1 1 1 1 NADH:flavin oxidoreductase / NADH oxidase family His_biosynth PF00977.16 gi|345006456|ref|YP_004809309.1| - 0.0022 17.3 0.0 0.0036 16.6 0.0 1.3 1 0 0 1 1 1 1 Histidine biosynthesis protein PcrB PF01884.12 gi|345006456|ref|YP_004809309.1| - 0.026 13.7 0.0 0.046 12.9 0.0 1.3 1 0 0 1 1 1 0 PcrB family MR_MLE_C PF13378.1 gi|345006457|ref|YP_004809310.1| - 1.2e-15 57.4 3.5 2.6e-15 56.3 0.6 2.3 2 0 0 2 2 2 1 Enolase C-terminal domain-like MR_MLE PF01188.16 gi|345006457|ref|YP_004809310.1| - 1.1e-14 54.6 3.7 1.1e-14 54.6 2.6 2.1 2 0 0 2 2 2 1 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain MR_MLE_N PF02746.11 gi|345006457|ref|YP_004809310.1| - 8.5e-14 51.5 0.0 1.6e-13 50.6 0.0 1.5 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain MAAL_C PF07476.6 gi|345006457|ref|YP_004809310.1| - 0.0048 15.8 0.4 0.0084 15.0 0.3 1.4 1 0 0 1 1 1 1 Methylaspartate ammonia-lyase C-terminus Amidohydro_3 PF07969.6 gi|345006458|ref|YP_004809311.1| - 6.9e-19 68.3 5.5 4.5e-18 65.6 3.8 2.0 1 1 0 1 1 1 1 Amidohydrolase family D-aminoacyl_C PF07908.7 gi|345006458|ref|YP_004809311.1| - 4.7e-12 45.0 0.3 4.7e-12 45.0 0.2 1.8 2 0 0 2 2 2 1 D-aminoacylase, C-terminal region Amidohydro_5 PF13594.1 gi|345006458|ref|YP_004809311.1| - 9.2e-12 44.6 0.4 9.2e-12 44.6 0.3 2.2 2 0 0 2 2 2 1 Amidohydrolase Amidohydro_4 PF13147.1 gi|345006458|ref|YP_004809311.1| - 4.8e-07 30.0 10.3 0.00012 22.2 2.6 2.8 1 1 1 2 2 2 2 Amidohydrolase Amidohydro_1 PF01979.15 gi|345006458|ref|YP_004809311.1| - 0.00042 20.0 0.5 0.66 9.5 0.0 2.4 2 1 0 2 2 2 2 Amidohydrolase family Urease_alpha PF00449.15 gi|345006458|ref|YP_004809311.1| - 0.0071 16.4 0.1 0.019 15.0 0.1 1.7 1 0 0 1 1 1 1 Urease alpha-subunit, N-terminal domain UPF0547 PF10571.4 gi|345006461|ref|YP_004809314.1| - 0.022 14.4 1.4 0.11 12.1 1.0 2.0 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 DNA_RNApol_7kD PF03604.8 gi|345006461|ref|YP_004809314.1| - 0.084 12.3 3.1 0.82 9.1 0.4 2.5 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit ADK_lid PF05191.9 gi|345006461|ref|YP_004809314.1| - 0.12 12.0 3.1 3 7.5 0.4 2.4 2 0 0 2 2 2 0 Adenylate kinase, active site lid zf-ribbon_3 PF13248.1 gi|345006461|ref|YP_004809314.1| - 0.2 10.9 10.1 1.5 8.1 7.0 2.1 1 1 0 1 1 1 0 zinc-ribbon domain DZR PF12773.2 gi|345006461|ref|YP_004809314.1| - 0.63 9.9 8.0 0.13 12.1 2.5 2.1 2 1 0 2 2 2 0 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|345006461|ref|YP_004809314.1| - 0.7 9.4 5.3 12 5.5 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zf-IS66 PF13005.2 gi|345006461|ref|YP_004809314.1| - 2.7 8.0 6.0 5.2 7.1 0.5 2.8 2 1 1 3 3 3 0 zinc-finger binding domain of transposase IS66 zf-C2H2_3 PF13878.1 gi|345006461|ref|YP_004809314.1| - 4.2 7.0 5.1 12 5.5 0.2 2.4 2 0 0 2 2 2 0 zinc-finger of acetyl-transferase ESCO TMF_DNA_bd PF12329.3 gi|345006462|ref|YP_004809315.1| - 0.00029 20.6 2.3 0.029 14.1 0.3 2.9 3 0 0 3 3 3 1 TATA element modulatory factor 1 DNA binding EzrA PF06160.7 gi|345006462|ref|YP_004809315.1| - 0.0037 15.5 2.6 0.0043 15.2 1.8 1.1 1 0 0 1 1 1 1 Septation ring formation regulator, EzrA DUF4515 PF14988.1 gi|345006462|ref|YP_004809315.1| - 0.0084 15.7 3.2 0.011 15.4 2.2 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4515) Helicase_IV_N PF12462.3 gi|345006462|ref|YP_004809315.1| - 0.025 14.2 1.0 0.037 13.6 0.7 1.3 1 0 0 1 1 1 0 DNA helicase IV / RNA helicase N terminal DUF177 PF02620.12 gi|345006462|ref|YP_004809315.1| - 0.058 13.4 2.6 0.092 12.7 1.8 1.5 1 1 0 1 1 1 0 Uncharacterized ACR, COG1399 DUF812 PF05667.6 gi|345006462|ref|YP_004809315.1| - 0.067 11.6 4.5 0.078 11.4 3.1 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF812) DUF4407 PF14362.1 gi|345006462|ref|YP_004809315.1| - 0.08 11.8 6.8 0.1 11.5 4.7 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) Frataxin_Cyay PF01491.11 gi|345006462|ref|YP_004809315.1| - 0.13 12.0 1.6 0.25 11.1 0.1 2.1 2 0 0 2 2 2 0 Frataxin-like domain AAA_32 PF13654.1 gi|345006462|ref|YP_004809315.1| - 0.14 10.7 3.8 0.16 10.5 2.6 1.0 1 0 0 1 1 1 0 AAA domain Macoilin PF09726.4 gi|345006462|ref|YP_004809315.1| - 0.16 10.2 2.3 0.17 10.1 1.6 1.0 1 0 0 1 1 1 0 Transmembrane protein Mnd1 PF03962.10 gi|345006462|ref|YP_004809315.1| - 0.18 11.4 3.1 0.24 11.0 2.2 1.5 1 1 0 1 1 1 0 Mnd1 family PilJ PF13675.1 gi|345006462|ref|YP_004809315.1| - 0.24 11.7 3.7 5.4 7.3 2.6 2.4 1 1 0 1 1 1 0 Type IV pili methyl-accepting chemotaxis transducer N-term DUF4303 PF14136.1 gi|345006462|ref|YP_004809315.1| - 0.24 11.0 4.1 0.72 9.4 2.9 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF4303) IncA PF04156.9 gi|345006462|ref|YP_004809315.1| - 0.37 10.3 4.9 0.51 9.9 3.4 1.3 1 0 0 1 1 1 0 IncA protein Phage_GPO PF05929.6 gi|345006462|ref|YP_004809315.1| - 1.3 8.2 8.7 2.5 7.2 1.2 2.1 1 1 1 2 2 2 0 Phage capsid scaffolding protein (GPO) serine peptidase DinB_2 PF12867.2 gi|345006462|ref|YP_004809315.1| - 2.3 8.5 6.9 4.6 7.5 1.0 2.1 1 1 1 2 2 2 0 DinB superfamily CCP_MauG PF03150.9 gi|345006462|ref|YP_004809315.1| - 4.7 7.5 6.4 38 4.5 4.2 1.9 1 1 1 2 2 2 0 Di-haem cytochrome c peroxidase CENP-Q PF13094.1 gi|345006462|ref|YP_004809315.1| - 6.8 6.7 9.0 27 4.7 6.3 1.8 1 1 0 1 1 1 0 CENP-Q, a CENPA-CAD centromere complex subunit SBP_bac_5 PF00496.17 gi|345006463|ref|YP_004809316.1| - 3.1e-54 184.2 4.5 3.2e-48 164.4 2.2 2.2 2 0 0 2 2 2 2 Bacterial extracellular solute-binding proteins, family 5 Middle BPD_transp_1 PF00528.17 gi|345006464|ref|YP_004809317.1| - 1.7e-40 138.4 8.5 1.7e-40 138.4 5.9 2.3 1 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.17 gi|345006465|ref|YP_004809318.1| - 6.1e-26 91.0 19.3 1.9e-25 89.4 9.9 2.4 2 0 0 2 2 2 2 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.2 gi|345006465|ref|YP_004809318.1| - 7.1e-12 44.5 3.1 7.5e-11 41.2 0.3 2.8 2 0 0 2 2 2 1 N-terminal TM domain of oligopeptide transport permease C ABC_tran PF00005.22 gi|345006466|ref|YP_004809319.1| - 9.3e-24 84.2 0.0 1.4e-23 83.7 0.0 1.3 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|345006466|ref|YP_004809319.1| - 3.2e-17 62.6 0.1 6.7e-17 61.6 0.0 1.6 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|345006466|ref|YP_004809319.1| - 4e-12 46.7 0.4 3.5e-08 33.7 0.0 2.1 1 1 1 2 2 2 2 AAA domain AAA_22 PF13401.1 gi|345006466|ref|YP_004809319.1| - 7.8e-06 26.0 0.6 0.00014 21.9 0.4 2.1 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|345006466|ref|YP_004809319.1| - 2.6e-05 23.5 0.5 0.00027 20.2 0.4 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|345006466|ref|YP_004809319.1| - 0.0004 19.8 0.0 0.00074 18.9 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.1 gi|345006466|ref|YP_004809319.1| - 0.00071 18.7 0.1 0.037 13.0 0.1 2.1 2 0 0 2 2 2 1 AAA ATPase domain AAA_16 PF13191.1 gi|345006466|ref|YP_004809319.1| - 0.00085 19.3 0.3 0.0024 17.8 0.2 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_25 PF13481.1 gi|345006466|ref|YP_004809319.1| - 0.0016 17.9 0.5 0.054 12.8 0.3 2.3 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.1 gi|345006466|ref|YP_004809319.1| - 0.0018 18.6 0.0 0.0031 17.8 0.0 1.5 1 1 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|345006466|ref|YP_004809319.1| - 0.0023 17.1 0.0 0.0056 15.8 0.0 1.7 1 0 0 1 1 1 1 Protein of unknown function, DUF258 tRNA_lig_kinase PF08303.6 gi|345006466|ref|YP_004809319.1| - 0.0025 17.7 0.0 0.0055 16.5 0.0 1.5 1 0 0 1 1 1 1 tRNA ligase kinase domain AAA PF00004.24 gi|345006466|ref|YP_004809319.1| - 0.019 15.1 0.0 0.23 11.6 0.0 2.1 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_18 PF13238.1 gi|345006466|ref|YP_004809319.1| - 0.022 15.0 0.2 0.082 13.2 0.0 1.9 1 1 1 2 2 2 0 AAA domain NB-ARC PF00931.17 gi|345006466|ref|YP_004809319.1| - 0.022 13.6 0.0 0.04 12.7 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain AAA_5 PF07728.9 gi|345006466|ref|YP_004809319.1| - 0.024 14.3 0.1 0.05 13.3 0.1 1.5 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_33 PF13671.1 gi|345006466|ref|YP_004809319.1| - 0.031 14.1 0.0 0.064 13.1 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_17 PF13207.1 gi|345006466|ref|YP_004809319.1| - 0.038 14.8 0.4 0.15 12.8 0.2 2.2 1 1 0 1 1 1 0 AAA domain Mg_chelatase PF01078.16 gi|345006466|ref|YP_004809319.1| - 0.042 12.9 0.1 0.18 10.9 0.0 1.9 1 1 0 2 2 2 0 Magnesium chelatase, subunit ChlI PRK PF00485.13 gi|345006466|ref|YP_004809319.1| - 0.11 11.9 0.0 0.19 11.2 0.0 1.4 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family ABC_ATPase PF09818.4 gi|345006466|ref|YP_004809319.1| - 0.12 10.9 0.1 0.27 9.7 0.0 1.6 2 0 0 2 2 2 0 Predicted ATPase of the ABC class ABC_tran PF00005.22 gi|345006467|ref|YP_004809320.1| - 1e-32 113.3 0.0 1.5e-32 112.7 0.0 1.3 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|345006467|ref|YP_004809320.1| - 1.8e-16 60.2 0.5 3.2e-16 59.4 0.3 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|345006467|ref|YP_004809320.1| - 0.00024 21.1 0.5 0.016 15.2 0.1 2.1 1 1 0 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|345006467|ref|YP_004809320.1| - 0.00073 19.6 0.0 0.0021 18.2 0.0 1.8 1 1 0 1 1 1 1 AAA domain KaiC PF06745.8 gi|345006467|ref|YP_004809320.1| - 0.009 15.1 2.0 0.063 12.3 0.3 2.4 3 0 0 3 3 3 1 KaiC AAA PF00004.24 gi|345006467|ref|YP_004809320.1| - 0.028 14.5 0.0 0.054 13.6 0.0 1.5 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_18 PF13238.1 gi|345006467|ref|YP_004809320.1| - 0.031 14.6 0.5 0.084 13.1 0.3 2.0 1 1 0 1 1 1 0 AAA domain PRK PF00485.13 gi|345006467|ref|YP_004809320.1| - 0.033 13.7 0.0 0.046 13.2 0.0 1.3 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family AAA_25 PF13481.1 gi|345006467|ref|YP_004809320.1| - 0.045 13.1 0.0 0.15 11.4 0.0 1.8 2 1 0 2 2 2 0 AAA domain UPF0079 PF02367.12 gi|345006467|ref|YP_004809320.1| - 0.091 12.3 0.2 0.2 11.2 0.1 1.5 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 AAA_24 PF13479.1 gi|345006467|ref|YP_004809320.1| - 0.16 11.5 0.0 0.33 10.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain Cupin_2 PF07883.6 gi|345006469|ref|YP_004809322.1| - 4.1e-17 61.4 0.3 4.1e-17 61.4 0.2 1.6 2 0 0 2 2 2 1 Cupin domain Cupin_6 PF12852.2 gi|345006469|ref|YP_004809322.1| - 1.6e-07 31.0 0.0 1.8e-07 30.9 0.0 1.1 1 0 0 1 1 1 1 Cupin AraC_binding PF02311.14 gi|345006469|ref|YP_004809322.1| - 1.8e-07 30.9 0.0 2.4e-07 30.4 0.0 1.2 1 0 0 1 1 1 1 AraC-like ligand binding domain Cupin_3 PF05899.7 gi|345006469|ref|YP_004809322.1| - 5.5e-06 25.6 0.0 9.2e-06 24.9 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF861) Cupin_1 PF00190.17 gi|345006469|ref|YP_004809322.1| - 6.5e-05 22.3 0.0 0.00012 21.4 0.0 1.4 1 1 0 1 1 1 1 Cupin MannoseP_isomer PF01050.13 gi|345006469|ref|YP_004809322.1| - 0.00027 20.5 0.0 0.00032 20.3 0.0 1.1 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase cNMP_binding PF00027.24 gi|345006469|ref|YP_004809322.1| - 0.012 15.3 0.0 0.017 14.9 0.0 1.4 1 0 0 1 1 1 0 Cyclic nucleotide-binding domain EutQ PF06249.7 gi|345006469|ref|YP_004809322.1| - 0.029 13.9 0.0 0.038 13.5 0.0 1.1 1 0 0 1 1 1 0 Ethanolamine utilisation protein EutQ CENP-C_C PF11699.3 gi|345006469|ref|YP_004809322.1| - 0.034 14.1 0.0 0.053 13.4 0.0 1.2 1 0 0 1 1 1 0 Mif2/CENP-C like DUF1485 PF07364.7 gi|345006470|ref|YP_004809323.1| - 4.5e-95 318.2 0.5 6e-95 317.7 0.3 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1485) MlrC_C PF07171.7 gi|345006470|ref|YP_004809323.1| - 5.1e-48 162.9 0.1 7.4e-48 162.4 0.0 1.3 1 0 0 1 1 1 1 MlrC C-terminus Amidohydro_3 PF07969.6 gi|345006471|ref|YP_004809324.1| - 9.3e-23 81.0 6.8 6.5e-22 78.3 4.7 2.0 1 1 0 1 1 1 1 Amidohydrolase family D-aminoacyl_C PF07908.7 gi|345006471|ref|YP_004809324.1| - 3.8e-14 51.7 0.2 3.8e-14 51.7 0.2 2.5 3 0 0 3 3 3 1 D-aminoacylase, C-terminal region Amidohydro_1 PF01979.15 gi|345006471|ref|YP_004809324.1| - 1.5e-12 47.8 0.1 4.8e-09 36.3 0.0 2.7 3 0 0 3 3 3 2 Amidohydrolase family Amidohydro_4 PF13147.1 gi|345006471|ref|YP_004809324.1| - 4.1e-12 46.7 5.6 9.7e-07 29.0 0.0 2.7 2 1 0 2 2 2 2 Amidohydrolase Amidohydro_5 PF13594.1 gi|345006471|ref|YP_004809324.1| - 3.2e-11 42.8 0.5 1.1e-10 41.1 0.1 2.1 2 0 0 2 2 2 1 Amidohydrolase Amidohydro_3 PF07969.6 gi|345006472|ref|YP_004809325.1| - 1.4e-23 83.8 7.4 4.3e-23 82.1 5.1 1.7 1 1 0 1 1 1 1 Amidohydrolase family D-aminoacyl_C PF07908.7 gi|345006472|ref|YP_004809325.1| - 9.5e-16 56.8 0.1 2e-15 55.8 0.1 1.6 1 0 0 1 1 1 1 D-aminoacylase, C-terminal region Amidohydro_5 PF13594.1 gi|345006472|ref|YP_004809325.1| - 6.5e-14 51.5 0.1 1.7e-13 50.1 0.0 1.7 1 0 0 1 1 1 1 Amidohydrolase Amidohydro_4 PF13147.1 gi|345006472|ref|YP_004809325.1| - 4.3e-13 49.9 5.5 1.9e-05 24.8 0.0 2.4 2 0 0 2 2 2 2 Amidohydrolase Amidohydro_1 PF01979.15 gi|345006472|ref|YP_004809325.1| - 1.4e-11 44.6 0.0 2e-07 30.9 0.0 2.7 2 2 0 2 2 2 2 Amidohydrolase family PALP PF00291.20 gi|345006473|ref|YP_004809326.1| - 2.8e-63 213.9 4.2 3.2e-63 213.7 2.9 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Peptidase_M20 PF01546.23 gi|345006474|ref|YP_004809327.1| - 1.6e-21 76.6 3.5 3.1e-21 75.7 2.4 1.4 1 1 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.9 gi|345006474|ref|YP_004809327.1| - 3.7e-05 23.4 0.0 8.3e-05 22.2 0.0 1.6 1 0 0 1 1 1 1 Peptidase dimerisation domain Peptidase_M28 PF04389.12 gi|345006474|ref|YP_004809327.1| - 0.0048 16.6 0.0 0.0095 15.6 0.0 1.5 1 0 0 1 1 1 1 Peptidase family M28 Fer2_4 PF13510.1 gi|345006474|ref|YP_004809327.1| - 0.064 13.0 0.1 0.3 10.9 0.1 2.1 2 0 0 2 2 2 0 2Fe-2S iron-sulfur cluster binding domain PALP PF00291.20 gi|345006475|ref|YP_004809328.1| - 2.4e-64 217.5 0.5 2.9e-64 217.2 0.3 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme HTH_10 PF04967.7 gi|345006476|ref|YP_004809329.1| - 1e-19 69.8 0.0 2e-19 68.9 0.0 1.5 1 0 0 1 1 1 1 HTH DNA binding domain HTH_5 PF01022.15 gi|345006476|ref|YP_004809329.1| - 7.5e-05 22.3 0.1 0.00036 20.1 0.0 2.2 3 0 0 3 3 3 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.1 gi|345006476|ref|YP_004809329.1| - 0.00037 19.8 0.1 0.0014 18.0 0.1 2.0 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.2 gi|345006476|ref|YP_004809329.1| - 0.0013 18.4 0.0 0.0035 17.1 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|345006476|ref|YP_004809329.1| - 0.0015 18.1 0.0 0.0052 16.4 0.0 1.9 2 0 0 2 2 2 1 MarR family Sigma70_r4_2 PF08281.7 gi|345006476|ref|YP_004809329.1| - 0.0021 17.4 1.3 0.035 13.5 0.9 2.3 1 1 0 1 1 1 1 Sigma-70, region 4 Sigma70_r4 PF04545.11 gi|345006476|ref|YP_004809329.1| - 0.0085 15.3 1.4 0.023 13.9 0.1 2.3 2 0 0 2 2 2 1 Sigma-70, region 4 IpaC_SipC PF09599.5 gi|345006476|ref|YP_004809329.1| - 0.011 14.8 0.2 0.031 13.2 0.1 1.7 1 1 1 2 2 2 0 Salmonella-Shigella invasin protein C (IpaC_SipC) HTH_11 PF08279.7 gi|345006476|ref|YP_004809329.1| - 0.014 15.0 0.3 0.19 11.4 0.0 2.4 2 0 0 2 2 2 0 HTH domain HTH_30 PF13556.1 gi|345006476|ref|YP_004809329.1| - 0.021 14.4 0.0 0.17 11.4 0.0 2.2 2 0 0 2 2 2 0 PucR C-terminal helix-turn-helix domain Methyltransf_13 PF08421.6 gi|345006476|ref|YP_004809329.1| - 0.049 13.1 0.0 4.2 6.9 0.0 2.4 2 0 0 2 2 2 0 Putative zinc binding domain Peptidase_M19 PF01244.16 gi|345006477|ref|YP_004809330.1| - 2.9e-68 230.1 0.0 3.4e-68 229.9 0.0 1.0 1 0 0 1 1 1 1 Membrane dipeptidase (Peptidase family M19) Amidohydro_2 PF04909.9 gi|345006477|ref|YP_004809330.1| - 0.04 13.4 1.6 0.18 11.3 0.0 2.4 1 1 0 2 2 2 0 Amidohydrolase Beta-lactamase PF00144.19 gi|345006478|ref|YP_004809331.1| - 1.8e-60 204.7 0.1 2.4e-60 204.2 0.1 1.1 1 0 0 1 1 1 1 Beta-lactamase Pab87_oct PF13969.1 gi|345006478|ref|YP_004809331.1| - 2.3e-17 62.8 0.0 4.7e-17 61.8 0.0 1.5 1 0 0 1 1 1 1 Pab87 octamerisation domain DDE_Tnp_IS240 PF13610.1 gi|345006479|ref|YP_004809332.1| - 4.2e-16 59.1 0.3 5.7e-16 58.7 0.2 1.2 1 0 0 1 1 1 1 DDE domain DDE_Tnp_IS66 PF03050.9 gi|345006479|ref|YP_004809332.1| - 4.1e-05 22.9 0.2 0.00011 21.5 0.0 1.7 1 1 0 1 1 1 1 Transposase IS66 family rve PF00665.21 gi|345006479|ref|YP_004809332.1| - 0.0035 17.4 0.4 0.0098 16.0 0.3 1.8 1 1 0 1 1 1 1 Integrase core domain DDE_Tnp_1 PF01609.16 gi|345006479|ref|YP_004809332.1| - 0.24 10.9 1.6 0.9 9.0 0.5 2.3 1 1 1 2 2 2 0 Transposase DDE domain tRNA_NucTransf2 PF09249.6 gi|345006481|ref|YP_004809334.1| - 1.3e-39 134.5 0.0 2.5e-39 133.6 0.0 1.5 1 0 0 1 1 1 1 tRNA nucleotidyltransferase, second domain NTP_transf_2 PF01909.18 gi|345006481|ref|YP_004809334.1| - 1.9e-10 40.9 0.1 5.1e-10 39.5 0.1 1.7 1 0 0 1 1 1 1 Nucleotidyltransferase domain Hist_deacetyl PF00850.14 gi|345006482|ref|YP_004809335.1| - 1.2e-87 294.1 0.0 1.5e-87 293.8 0.0 1.0 1 0 0 1 1 1 1 Histone deacetylase domain CBFD_NFYB_HMF PF00808.18 gi|345006483|ref|YP_004809336.1| - 1.2e-23 82.9 0.3 9.5e-13 48.0 0.1 2.1 2 0 0 2 2 2 2 Histone-like transcription factor (CBF/NF-Y) and archaeal histone Histone PF00125.19 gi|345006483|ref|YP_004809336.1| - 4.1e-14 52.4 0.8 2e-08 34.2 0.3 2.1 2 0 0 2 2 2 2 Core histone H2A/H2B/H3/H4 CENP-S PF15630.1 gi|345006483|ref|YP_004809336.1| - 6.6e-05 23.0 0.4 0.00013 22.0 0.3 1.6 1 1 0 1 1 1 1 Kinetochore component CENP-S DUF1931 PF09123.6 gi|345006483|ref|YP_004809336.1| - 0.0033 17.3 0.5 0.024 14.5 0.4 2.0 1 1 0 1 1 1 1 Domain of unknown function (DUF1931) TFIID_20kDa PF03847.8 gi|345006483|ref|YP_004809336.1| - 0.0035 17.5 0.2 0.0087 16.3 0.1 1.6 1 0 0 1 1 1 1 Transcription initiation factor TFIID subunit A TAF PF02969.12 gi|345006483|ref|YP_004809336.1| - 0.012 15.5 0.9 0.23 11.4 0.2 2.2 2 0 0 2 2 2 0 TATA box binding protein associated factor (TAF) TFIID-18kDa PF02269.11 gi|345006483|ref|YP_004809336.1| - 0.014 15.1 0.1 0.55 10.0 0.0 2.2 2 0 0 2 2 2 0 Transcription initiation factor IID, 18kD subunit Bromo_TP PF07524.8 gi|345006483|ref|YP_004809336.1| - 0.038 13.7 0.4 0.11 12.2 0.1 1.8 2 0 0 2 2 2 0 Bromodomain associated Big_4 PF07532.6 gi|345006484|ref|YP_004809337.1| - 0.089 12.3 0.2 0.089 12.3 0.1 1.7 2 0 0 2 2 2 0 Bacterial Ig-like domain (group 4) DUF1180 PF06679.7 gi|345006484|ref|YP_004809337.1| - 0.099 12.5 1.0 0.17 11.7 0.7 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1180) Herpes_U47 PF05467.6 gi|345006484|ref|YP_004809337.1| - 0.13 10.0 1.4 0.14 10.0 1.0 1.1 1 0 0 1 1 1 0 Herpesvirus glycoprotein U47 Cap_synth_GfcB PF11102.3 gi|345006484|ref|YP_004809337.1| - 0.16 11.4 0.5 0.29 10.6 0.0 1.6 2 0 0 2 2 2 0 Group 4 capsule polysaccharide formation lipoprotein gfcB DUF3558 PF12079.3 gi|345006484|ref|YP_004809337.1| - 0.57 9.8 8.1 1 9.0 5.6 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF3558) Myco_19_kDa PF05481.7 gi|345006484|ref|YP_004809337.1| - 5.2 6.8 7.1 2.6 7.8 3.1 2.0 2 1 0 2 2 2 0 Mycobacterium 19 kDa lipoprotein antigen Phageshock_PspD PF09584.5 gi|345006485|ref|YP_004809338.1| - 0.054 13.2 0.1 0.09 12.4 0.1 1.2 1 0 0 1 1 1 0 Phage shock protein PspD (Phageshock_PspD) Rad51 PF08423.6 gi|345006487|ref|YP_004809340.1| - 2.6e-77 259.2 0.1 4.9e-46 156.7 0.0 2.1 2 0 0 2 2 2 2 Rad51 HHH_5 PF14520.1 gi|345006487|ref|YP_004809340.1| - 2.7e-10 40.2 0.0 8.6e-10 38.6 0.0 1.9 1 0 0 1 1 1 1 Helix-hairpin-helix domain RecA PF00154.16 gi|345006487|ref|YP_004809340.1| - 2.1e-08 33.6 0.0 0.0013 17.9 0.0 2.1 2 0 0 2 2 2 2 recA bacterial DNA recombination protein AAA_25 PF13481.1 gi|345006487|ref|YP_004809340.1| - 8.2e-08 31.8 0.1 1.2e-07 31.3 0.1 1.3 1 0 0 1 1 1 1 AAA domain HHH PF00633.18 gi|345006487|ref|YP_004809340.1| - 2.5e-05 23.7 1.3 8.5e-05 22.0 0.0 2.6 3 0 0 3 3 3 1 Helix-hairpin-helix motif HHH_2 PF12826.2 gi|345006487|ref|YP_004809340.1| - 0.00016 21.4 0.1 0.00053 19.8 0.0 1.9 2 0 0 2 2 2 1 Helix-hairpin-helix motif KaiC PF06745.8 gi|345006487|ref|YP_004809340.1| - 0.0012 18.0 0.0 0.0024 17.0 0.0 1.6 1 0 0 1 1 1 1 KaiC Cdd1 PF11731.3 gi|345006487|ref|YP_004809340.1| - 0.0047 16.8 0.0 0.011 15.5 0.0 1.6 1 0 0 1 1 1 1 Pathogenicity locus IMS_HHH PF11798.3 gi|345006487|ref|YP_004809340.1| - 0.023 14.7 0.0 0.13 12.3 0.0 2.3 2 0 0 2 2 2 0 IMS family HHH motif DNA_pol_lambd_f PF10391.4 gi|345006487|ref|YP_004809340.1| - 0.024 14.1 0.0 0.075 12.5 0.0 1.9 1 0 0 1 1 1 0 Fingers domain of DNA polymerase lambda AAA_22 PF13401.1 gi|345006487|ref|YP_004809340.1| - 0.048 13.8 0.9 0.33 11.0 0.6 2.3 1 1 0 1 1 1 0 AAA domain HHH_8 PF14716.1 gi|345006487|ref|YP_004809340.1| - 0.096 12.8 0.0 0.29 11.3 0.0 1.9 1 0 0 1 1 1 0 Helix-hairpin-helix domain HAUS-augmin3 PF14932.1 gi|345006489|ref|YP_004809342.1| - 0.042 13.0 0.1 0.043 13.0 0.1 1.1 1 0 0 1 1 1 0 HAUS augmin-like complex subunit 3 DUF3371 PF11851.3 gi|345006489|ref|YP_004809342.1| - 0.12 13.0 0.2 0.12 13.0 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3371) Sdh5 PF03937.11 gi|345006490|ref|YP_004809343.1| - 0.098 12.3 0.1 2.6 7.7 0.0 2.4 2 0 0 2 2 2 0 Flavinator of succinate dehydrogenase PHP PF02811.14 gi|345006491|ref|YP_004809344.1| - 2.4e-11 43.7 0.0 3.8e-11 43.1 0.0 1.4 1 1 0 1 1 1 1 PHP domain PHP_C PF13263.1 gi|345006491|ref|YP_004809344.1| - 0.069 12.6 0.0 0.14 11.6 0.0 1.5 1 0 0 1 1 1 0 PHP-associated SNARE_assoc PF09335.6 gi|345006492|ref|YP_004809345.1| - 8.8e-09 35.6 4.1 1.8e-08 34.6 2.8 1.6 1 1 0 1 1 1 1 SNARE associated Golgi protein DUF95 PF01944.12 gi|345006492|ref|YP_004809345.1| - 0.028 14.0 0.3 0.028 14.0 0.2 1.4 2 0 0 2 2 2 0 Integral membrane protein DUF95 YyzF PF14116.1 gi|345006493|ref|YP_004809346.1| - 0.025 14.5 1.1 0.068 13.1 0.0 1.9 2 0 0 2 2 2 0 YyzF-like protein PyrI_C PF02748.10 gi|345006493|ref|YP_004809346.1| - 0.55 9.7 2.1 0.8 9.1 0.5 1.8 1 1 1 2 2 2 0 Aspartate carbamoyltransferase regulatory chain, metal binding domain ALAD PF00490.16 gi|345006494|ref|YP_004809347.1| - 3.5e-140 466.4 0.2 4e-140 466.3 0.1 1.0 1 0 0 1 1 1 1 Delta-aminolevulinic acid dehydratase Aminotran_3 PF00202.16 gi|345006495|ref|YP_004809348.1| - 1e-64 218.5 0.0 1.4e-64 218.1 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-III Aminotran_1_2 PF00155.16 gi|345006495|ref|YP_004809348.1| - 0.0081 15.1 0.0 0.013 14.4 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class I and II WAP PF00095.16 gi|345006495|ref|YP_004809348.1| - 0.074 13.0 2.6 0.13 12.2 1.8 1.3 1 0 0 1 1 1 0 WAP-type (Whey Acidic Protein) 'four-disulfide core' Porphobil_deam PF01379.15 gi|345006496|ref|YP_004809349.1| - 7.9e-59 198.1 0.1 1.8e-47 161.0 0.0 2.2 2 0 0 2 2 2 2 Porphobilinogen deaminase, dipyromethane cofactor binding domain Porphobil_deamC PF03900.10 gi|345006496|ref|YP_004809349.1| - 2.1e-11 43.7 0.0 5.6e-11 42.3 0.0 1.8 1 0 0 1 1 1 1 Porphobilinogen deaminase, C-terminal domain HEM4 PF02602.10 gi|345006497|ref|YP_004809350.1| - 4.5e-41 140.6 2.1 5.3e-41 140.3 1.5 1.1 1 0 0 1 1 1 1 Uroporphyrinogen-III synthase HemD Peripla_BP_6 PF13458.1 gi|345006497|ref|YP_004809350.1| - 0.009 15.4 0.6 0.012 15.0 0.4 1.2 1 0 0 1 1 1 1 Periplasmic binding protein Peripla_BP_3 PF13377.1 gi|345006497|ref|YP_004809350.1| - 0.015 15.2 2.4 0.03 14.3 0.8 2.1 2 1 1 3 3 3 0 Periplasmic binding protein-like domain G-patch PF01585.18 gi|345006497|ref|YP_004809350.1| - 0.096 12.4 0.0 0.18 11.6 0.0 1.5 1 0 0 1 1 1 0 G-patch domain dCMP_cyt_deam_1 PF00383.17 gi|345006498|ref|YP_004809351.1| - 3.3e-15 55.5 0.0 4.1e-15 55.2 0.0 1.1 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region XOO_2897-deam PF14440.1 gi|345006498|ref|YP_004809351.1| - 0.0028 17.3 0.1 0.006 16.2 0.0 1.6 1 1 1 2 2 2 1 Xanthomonas XOO_2897-like deaminase OTT_1508_deam PF14441.1 gi|345006498|ref|YP_004809351.1| - 0.024 14.4 0.0 0.028 14.2 0.0 1.1 1 0 0 1 1 1 0 OTT_1508-like deaminase UPF0126 PF03458.8 gi|345006499|ref|YP_004809352.1| - 9.9e-39 130.8 31.9 5.7e-20 70.7 8.0 2.4 3 0 0 3 3 3 2 UPF0126 domain CTP_transf_2 PF01467.21 gi|345006500|ref|YP_004809353.1| - 5.1e-16 59.1 0.1 6.6e-16 58.7 0.1 1.2 1 0 0 1 1 1 1 Cytidylyltransferase Citrate_ly_lig PF08218.6 gi|345006500|ref|YP_004809353.1| - 0.12 11.8 0.0 0.56 9.6 0.0 2.1 1 1 0 1 1 1 0 Citrate lyase ligase C-terminal domain Lon_C PF05362.8 gi|345006501|ref|YP_004809354.1| - 2.2e-34 118.5 4.4 3.4e-34 117.9 3.1 1.3 1 0 0 1 1 1 1 Lon protease (S16) C-terminal proteolytic domain AAA_32 PF13654.1 gi|345006501|ref|YP_004809354.1| - 4.6e-28 98.1 0.0 8.7e-20 70.8 0.0 2.2 2 0 0 2 2 2 2 AAA domain Mg_chelatase PF01078.16 gi|345006501|ref|YP_004809354.1| - 4.2e-17 61.9 0.2 1.3e-10 40.8 0.1 2.4 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI Sigma54_activat PF00158.21 gi|345006501|ref|YP_004809354.1| - 8.3e-14 51.3 0.1 8.4e-08 31.8 0.0 2.5 2 0 0 2 2 2 2 Sigma-54 interaction domain MCM PF00493.18 gi|345006501|ref|YP_004809354.1| - 8.8e-11 41.1 0.4 0.036 12.8 0.0 3.2 3 0 0 3 3 3 3 MCM2/3/5 family AAA_5 PF07728.9 gi|345006501|ref|YP_004809354.1| - 1.3e-09 37.9 0.0 0.00041 20.0 0.0 3.0 3 0 0 3 3 3 2 AAA domain (dynein-related subfamily) ChlI PF13541.1 gi|345006501|ref|YP_004809354.1| - 9e-09 34.8 0.4 1.9e-08 33.8 0.3 1.6 1 0 0 1 1 1 1 Subunit ChlI of Mg-chelatase RuvB_N PF05496.7 gi|345006501|ref|YP_004809354.1| - 1.2e-06 27.8 0.1 0.00054 19.0 0.0 2.4 2 0 0 2 2 2 1 Holliday junction DNA helicase ruvB N-terminus AAA PF00004.24 gi|345006501|ref|YP_004809354.1| - 2.3e-06 27.8 0.0 0.012 15.8 0.0 2.7 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.1 gi|345006501|ref|YP_004809354.1| - 2.2e-05 24.5 0.0 0.0023 18.0 0.0 2.5 2 0 0 2 2 2 1 AAA domain Sigma54_activ_2 PF14532.1 gi|345006501|ref|YP_004809354.1| - 5.6e-05 23.2 0.0 0.22 11.5 0.0 2.6 2 0 0 2 2 2 2 Sigma-54 interaction domain TIP49 PF06068.8 gi|345006501|ref|YP_004809354.1| - 6.4e-05 21.8 0.6 0.091 11.4 0.0 2.5 3 0 0 3 3 3 2 TIP49 C-terminus AAA_19 PF13245.1 gi|345006501|ref|YP_004809354.1| - 0.00053 19.6 0.0 0.0022 17.7 0.0 2.1 2 0 0 2 2 1 1 Part of AAA domain AAA_3 PF07726.6 gi|345006501|ref|YP_004809354.1| - 0.00076 19.0 0.1 1.5 8.4 0.0 2.6 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_30 PF13604.1 gi|345006501|ref|YP_004809354.1| - 0.001 18.6 0.0 0.011 15.3 0.0 2.2 2 0 0 2 2 2 1 AAA domain PhoH PF02562.11 gi|345006501|ref|YP_004809354.1| - 0.0017 17.5 0.0 0.004 16.4 0.0 1.6 1 0 0 1 1 1 1 PhoH-like protein AAA_33 PF13671.1 gi|345006501|ref|YP_004809354.1| - 0.002 18.0 0.1 0.013 15.4 0.0 2.4 3 0 0 3 3 3 1 AAA domain AAA_18 PF13238.1 gi|345006501|ref|YP_004809354.1| - 0.0022 18.3 0.0 0.0073 16.6 0.0 1.9 1 0 0 1 1 1 1 AAA domain AAA_2 PF07724.9 gi|345006501|ref|YP_004809354.1| - 0.0068 16.3 0.0 3.8 7.3 0.0 2.6 2 0 0 2 2 2 1 AAA domain (Cdc48 subfamily) NACHT PF05729.7 gi|345006501|ref|YP_004809354.1| - 0.0087 15.7 0.0 0.022 14.4 0.0 1.7 2 0 0 2 2 1 1 NACHT domain AAA_PrkA PF08298.6 gi|345006501|ref|YP_004809354.1| - 0.01 14.5 0.0 0.34 9.5 0.0 2.3 2 0 0 2 2 2 0 PrkA AAA domain DUF815 PF05673.8 gi|345006501|ref|YP_004809354.1| - 0.015 14.1 0.0 0.033 13.1 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF815) Zeta_toxin PF06414.7 gi|345006501|ref|YP_004809354.1| - 0.017 14.1 0.0 0.039 13.0 0.0 1.6 1 0 0 1 1 1 0 Zeta toxin TrwB_AAD_bind PF10412.4 gi|345006501|ref|YP_004809354.1| - 0.02 13.5 0.0 0.034 12.7 0.0 1.3 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain IstB_IS21 PF01695.12 gi|345006501|ref|YP_004809354.1| - 0.023 14.1 0.0 0.049 13.0 0.0 1.5 1 0 0 1 1 1 0 IstB-like ATP binding protein ABC_tran PF00005.22 gi|345006501|ref|YP_004809354.1| - 0.024 14.9 0.0 0.074 13.3 0.0 1.8 2 0 0 2 2 1 0 ABC transporter Parvo_NS1 PF01057.12 gi|345006501|ref|YP_004809354.1| - 0.043 12.6 0.0 0.067 12.0 0.0 1.2 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 AAA_17 PF13207.1 gi|345006501|ref|YP_004809354.1| - 0.043 14.6 2.8 0.23 12.2 0.0 2.9 2 1 1 3 3 3 0 AAA domain AAA_16 PF13191.1 gi|345006501|ref|YP_004809354.1| - 0.047 13.6 0.0 0.17 11.8 0.0 2.0 2 0 0 2 2 1 0 AAA ATPase domain RNA_helicase PF00910.17 gi|345006501|ref|YP_004809354.1| - 0.16 12.1 0.0 0.37 10.9 0.0 1.6 1 0 0 1 1 1 0 RNA helicase YfhD PF14151.1 gi|345006501|ref|YP_004809354.1| - 1.6 8.8 5.7 5.2 7.2 3.9 1.9 1 0 0 1 1 1 0 YfhD-like protein Abi PF02517.11 gi|345006502|ref|YP_004809355.1| - 4e-15 55.7 10.2 4e-15 55.7 7.0 1.9 2 0 0 2 2 2 1 CAAX protease self-immunity DUF1469 PF07332.6 gi|345006502|ref|YP_004809355.1| - 0.21 11.2 0.1 0.21 11.2 0.0 4.0 4 0 0 4 4 4 0 Protein of unknown function (DUF1469) TatC PF00902.13 gi|345006503|ref|YP_004809356.1| - 7.6e-37 126.7 9.2 9e-37 126.5 6.4 1.0 1 0 0 1 1 1 1 Sec-independent protein translocase protein (TatC) TatC PF00902.13 gi|345006504|ref|YP_004809357.1| - 3.7e-67 225.8 38.1 1.1e-36 126.2 10.0 2.6 2 0 0 2 2 2 2 Sec-independent protein translocase protein (TatC) RHH_1 PF01402.16 gi|345006505|ref|YP_004809358.1| - 6e-05 22.7 0.0 0.00011 21.9 0.0 1.5 1 1 0 1 1 1 1 Ribbon-helix-helix protein, copG family DUF165 PF02592.10 gi|345006506|ref|YP_004809359.1| - 6.8e-41 139.8 4.1 6.8e-41 139.8 2.8 1.5 2 0 0 2 2 2 1 Uncharacterized ACR, YhhQ family COG1738 FtsJ PF01728.14 gi|345006507|ref|YP_004809360.1| - 2.7e-54 183.9 0.0 3.6e-54 183.5 0.0 1.2 1 0 0 1 1 1 1 FtsJ-like methyltransferase TRAM PF01938.15 gi|345006507|ref|YP_004809360.1| - 1.1e-11 44.3 2.9 1.1e-11 44.3 2.0 1.8 2 0 0 2 2 2 1 TRAM domain Methyltransf_31 PF13847.1 gi|345006507|ref|YP_004809360.1| - 8.2e-06 25.4 0.0 0.00011 21.8 0.0 2.1 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|345006507|ref|YP_004809360.1| - 6.4e-05 22.7 0.0 0.00015 21.5 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|345006507|ref|YP_004809360.1| - 0.0001 22.8 0.0 0.0002 21.9 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|345006507|ref|YP_004809360.1| - 0.024 14.6 0.1 0.075 13.0 0.1 1.8 1 1 0 1 1 1 0 Methyltransferase domain Methyltransf_2 PF00891.13 gi|345006507|ref|YP_004809360.1| - 0.041 13.0 0.1 0.062 12.4 0.0 1.2 1 0 0 1 1 1 0 O-methyltransferase TPR_16 PF13432.1 gi|345006507|ref|YP_004809360.1| - 0.072 13.7 0.2 4 8.2 0.1 2.4 2 0 0 2 2 2 0 Tetratricopeptide repeat Cupin_2 PF07883.6 gi|345006509|ref|YP_004809362.1| - 3.3e-10 39.2 0.2 5.2e-10 38.6 0.1 1.4 1 0 0 1 1 1 1 Cupin domain Cupin_1 PF00190.17 gi|345006509|ref|YP_004809362.1| - 8.5e-05 22.0 0.0 0.00012 21.5 0.0 1.2 1 0 0 1 1 1 1 Cupin AraC_binding PF02311.14 gi|345006509|ref|YP_004809362.1| - 0.00011 21.9 0.0 0.00016 21.3 0.0 1.3 1 0 0 1 1 1 1 AraC-like ligand binding domain AraC_binding_2 PF14525.1 gi|345006509|ref|YP_004809362.1| - 0.00034 20.2 0.1 0.00044 19.8 0.1 1.1 1 0 0 1 1 1 1 AraC-binding-like domain Cupin_3 PF05899.7 gi|345006509|ref|YP_004809362.1| - 0.011 15.1 0.0 0.015 14.7 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF861) D-aminoacyl_C PF07908.7 gi|345006509|ref|YP_004809362.1| - 0.022 14.0 2.4 3.5 7.0 0.0 2.8 3 0 0 3 3 3 0 D-aminoacylase, C-terminal region HgmA PF04209.8 gi|345006509|ref|YP_004809362.1| - 0.031 12.6 0.0 0.034 12.5 0.0 1.1 1 0 0 1 1 1 0 homogentisate 1,2-dioxygenase DUF1255 PF06865.6 gi|345006509|ref|YP_004809362.1| - 0.091 13.0 0.0 0.12 12.6 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1255) Usp PF00582.21 gi|345006511|ref|YP_004809364.1| - 8.7e-34 116.7 2.7 9.9e-34 116.5 1.9 1.0 1 0 0 1 1 1 1 Universal stress protein family PTS-HPr PF00381.14 gi|345006511|ref|YP_004809364.1| - 0.41 10.5 0.0 0.41 10.5 0.0 2.4 2 1 1 3 3 3 0 PTS HPr component phosphorylation site DUF4491 PF14898.1 gi|345006512|ref|YP_004809365.1| - 0.011 15.8 0.1 0.037 14.1 0.1 1.9 1 0 0 1 1 1 0 Domain of unknown function (DUF4491) DUF3007 PF11460.3 gi|345006512|ref|YP_004809365.1| - 0.021 14.8 0.3 0.046 13.8 0.2 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3007) FmdA_AmdA PF03069.10 gi|345006513|ref|YP_004809366.1| - 2.1e-50 171.5 2.1 3.3e-28 98.4 0.1 2.4 1 1 1 2 2 2 2 Acetamidase/Formamidase family Aldo_ket_red PF00248.16 gi|345006514|ref|YP_004809367.1| - 1e-76 257.5 0.0 1.2e-76 257.2 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family Beta_elim_lyase PF01212.16 gi|345006515|ref|YP_004809368.1| - 1.2e-81 274.0 1.3 1.5e-81 273.7 0.9 1.1 1 0 0 1 1 1 1 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.12 gi|345006515|ref|YP_004809368.1| - 0.00064 18.8 0.0 0.0017 17.4 0.0 1.7 2 0 0 2 2 2 1 DegT/DnrJ/EryC1/StrS aminotransferase family GAF_3 PF13492.1 gi|345006516|ref|YP_004809369.1| - 2.5e-27 95.5 7.6 7.5e-10 39.0 0.0 4.1 4 0 0 4 4 4 3 GAF domain GAF_2 PF13185.1 gi|345006516|ref|YP_004809369.1| - 4.2e-24 85.7 11.2 5.8e-09 36.6 0.1 3.9 3 0 0 3 3 3 3 GAF domain HATPase_c PF02518.21 gi|345006516|ref|YP_004809369.1| - 1e-17 63.8 0.0 2.4e-17 62.6 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.20 gi|345006516|ref|YP_004809369.1| - 5.5e-14 51.9 0.7 5.5e-14 51.9 0.5 2.9 3 1 0 3 3 2 1 His Kinase A (phospho-acceptor) domain GAF PF01590.21 gi|345006516|ref|YP_004809369.1| - 3.4e-11 43.5 5.0 0.0018 18.4 0.0 3.8 3 1 0 3 3 3 3 GAF domain PAS_9 PF13426.1 gi|345006516|ref|YP_004809369.1| - 1.2e-09 38.4 0.0 5.3e-09 36.3 0.0 2.1 2 0 0 2 2 2 1 PAS domain PAS_4 PF08448.5 gi|345006516|ref|YP_004809369.1| - 1.4e-08 34.7 0.0 1.4e-08 34.7 0.0 4.0 5 0 0 5 5 5 1 PAS fold PAS_8 PF13188.1 gi|345006516|ref|YP_004809369.1| - 6.4e-06 25.8 0.0 5.4e-05 22.8 0.0 2.5 2 0 0 2 2 2 1 PAS domain PAS PF00989.19 gi|345006516|ref|YP_004809369.1| - 0.0031 17.2 0.0 0.01 15.5 0.0 1.9 1 0 0 1 1 1 1 PAS fold PAS_3 PF08447.6 gi|345006516|ref|YP_004809369.1| - 0.0071 16.4 0.0 0.018 15.1 0.0 1.7 1 0 0 1 1 1 1 PAS fold HATPase_c_5 PF14501.1 gi|345006516|ref|YP_004809369.1| - 0.028 14.1 0.0 0.058 13.1 0.0 1.6 1 0 0 1 1 1 0 GHKL domain WHG PF13305.1 gi|345006516|ref|YP_004809369.1| - 0.043 14.3 0.5 0.33 11.5 0.2 2.6 1 1 1 2 2 2 0 WHG domain SPOB_a PF14689.1 gi|345006516|ref|YP_004809369.1| - 0.051 13.1 0.0 0.11 12.1 0.0 1.5 1 0 0 1 1 1 0 Sensor_kinase_SpoOB-type, alpha-helical domain tRNA-synt_2c PF01411.14 gi|345006517|ref|YP_004809370.1| - 1.9e-112 376.3 0.0 2.4e-112 376.0 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (A) tRNA_SAD PF07973.9 gi|345006517|ref|YP_004809370.1| - 4.6e-12 45.6 0.8 1e-11 44.5 0.6 1.6 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain DHHA1 PF02272.14 gi|345006517|ref|YP_004809370.1| - 5e-10 38.9 6.4 1.7e-09 37.2 4.4 1.9 1 0 0 1 1 1 1 DHHA1 domain zf-RING_5 PF14634.1 gi|345006518|ref|YP_004809371.1| - 0.00053 19.6 2.7 0.0013 18.3 1.9 1.7 1 1 0 1 1 1 1 zinc-RING finger domain DUF1451 PF07295.6 gi|345006518|ref|YP_004809371.1| - 0.0051 16.5 1.2 0.0051 16.5 0.8 1.8 2 0 0 2 2 2 1 Protein of unknown function (DUF1451) C1_1 PF00130.17 gi|345006518|ref|YP_004809371.1| - 0.011 15.4 0.9 0.028 14.1 0.1 2.0 1 1 1 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) DZR PF12773.2 gi|345006518|ref|YP_004809371.1| - 0.012 15.4 5.4 1.7 8.5 3.7 2.4 1 1 0 1 1 1 0 Double zinc ribbon zf-C3HC4 PF00097.20 gi|345006518|ref|YP_004809371.1| - 0.038 13.6 0.9 0.06 13.0 0.7 1.4 1 1 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) FYVE PF01363.16 gi|345006518|ref|YP_004809371.1| - 0.056 13.3 6.0 0.16 11.8 4.1 1.9 1 1 0 1 1 1 0 FYVE zinc finger DUF1272 PF06906.6 gi|345006518|ref|YP_004809371.1| - 0.084 12.7 9.4 2.8 7.8 6.5 2.7 1 1 0 1 1 1 0 Protein of unknown function (DUF1272) zf-RING_4 PF14570.1 gi|345006518|ref|YP_004809371.1| - 0.13 11.8 4.8 0.095 12.3 1.2 2.0 2 0 0 2 2 2 0 RING/Ubox like zinc-binding domain zf-FPG_IleRS PF06827.9 gi|345006518|ref|YP_004809371.1| - 0.16 11.6 6.1 4.2 7.1 0.3 3.0 2 1 1 3 3 3 0 Zinc finger found in FPG and IleRS Zn-ribbon_8 PF09723.5 gi|345006518|ref|YP_004809371.1| - 0.44 10.5 14.4 14 5.7 0.2 3.3 2 1 0 2 2 2 0 Zinc ribbon domain zf-C3HC4_2 PF13923.1 gi|345006518|ref|YP_004809371.1| - 0.48 10.5 6.4 0.094 12.7 1.7 1.8 2 0 0 2 2 2 0 Zinc finger, C3HC4 type (RING finger) DUF164 PF02591.10 gi|345006518|ref|YP_004809371.1| - 0.85 9.5 6.4 0.52 10.1 1.8 2.3 2 1 0 2 2 2 0 Putative zinc ribbon domain zf-B_box PF00643.19 gi|345006518|ref|YP_004809371.1| - 1 9.3 8.9 0.53 10.2 1.0 2.8 3 0 0 3 3 3 0 B-box zinc finger IBR PF01485.16 gi|345006518|ref|YP_004809371.1| - 1.1 9.2 7.5 1.7 8.5 2.5 2.5 1 1 1 2 2 2 0 IBR domain zf-C3HC PF07967.8 gi|345006518|ref|YP_004809371.1| - 1.1 9.0 4.3 0.52 10.0 0.9 1.8 1 1 1 2 2 2 0 C3HC zinc finger-like HypA PF01155.14 gi|345006518|ref|YP_004809371.1| - 1.4 8.6 5.0 7.7 6.2 1.6 2.1 1 1 1 2 2 2 0 Hydrogenase expression/synthesis hypA family zf-C3HC4_4 PF15227.1 gi|345006518|ref|YP_004809371.1| - 3.5 7.5 7.2 1.4 8.8 3.0 1.8 2 0 0 2 2 2 0 zinc finger of C3HC4-type, RING Zn_Tnp_IS1595 PF12760.2 gi|345006518|ref|YP_004809371.1| - 7.5 6.4 12.0 3.5 7.5 1.1 3.3 1 1 2 3 3 3 0 Transposase zinc-ribbon domain Abhydrolase_6 PF12697.2 gi|345006519|ref|YP_004809372.1| - 2.9e-31 109.1 4.8 3.3e-31 108.9 3.3 1.0 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|345006519|ref|YP_004809372.1| - 4.2e-21 75.5 0.1 8.2e-12 45.1 0.0 2.1 1 1 1 2 2 2 2 alpha/beta hydrolase fold Abhydrolase_5 PF12695.2 gi|345006519|ref|YP_004809372.1| - 1.5e-14 53.9 0.0 3.1e-14 52.9 0.0 1.5 1 1 0 1 1 1 1 Alpha/beta hydrolase family Thioesterase PF00975.15 gi|345006519|ref|YP_004809372.1| - 9.7e-05 22.6 0.1 0.00015 22.0 0.0 1.3 1 1 0 1 1 1 1 Thioesterase domain Abhydrolase_4 PF08386.5 gi|345006519|ref|YP_004809372.1| - 0.0002 21.1 0.0 0.00045 20.0 0.0 1.6 1 0 0 1 1 1 1 TAP-like protein Peptidase_S9 PF00326.16 gi|345006519|ref|YP_004809372.1| - 0.0046 16.2 0.0 0.0065 15.7 0.0 1.2 1 0 0 1 1 1 1 Prolyl oligopeptidase family Esterase_phd PF10503.4 gi|345006519|ref|YP_004809372.1| - 0.018 14.3 0.3 0.56 9.4 0.0 2.1 2 0 0 2 2 2 0 Esterase PHB depolymerase NAD_binding_8 PF13450.1 gi|345006519|ref|YP_004809372.1| - 0.075 13.0 0.2 0.15 12.0 0.2 1.5 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain GHMP_kinases_C PF08544.8 gi|345006519|ref|YP_004809372.1| - 0.083 13.1 0.0 0.24 11.6 0.0 1.8 1 1 0 1 1 1 0 GHMP kinases C terminal DLH PF01738.13 gi|345006519|ref|YP_004809372.1| - 0.1 11.8 0.1 4.4 6.5 0.0 2.3 2 0 0 2 2 2 0 Dienelactone hydrolase family Mem_trans PF03547.13 gi|345006520|ref|YP_004809373.1| - 0.0084 14.4 2.2 0.0088 14.3 1.5 1.0 1 0 0 1 1 1 1 Membrane transport protein DUF2970 PF11174.3 gi|345006520|ref|YP_004809373.1| - 0.094 12.3 2.3 1.8 8.2 0.1 2.4 2 1 0 2 2 2 0 Protein of unknown function (DUF2970) FA_desaturase PF00487.19 gi|345006520|ref|YP_004809373.1| - 0.12 11.7 2.0 0.14 11.6 1.4 1.0 1 0 0 1 1 1 0 Fatty acid desaturase B12D PF06522.6 gi|345006520|ref|YP_004809373.1| - 5.8 6.7 6.0 2.4 7.9 2.7 1.5 1 1 1 2 2 2 0 NADH-ubiquinone reductase complex 1 MLRQ subunit HTH_31 PF13560.1 gi|345006521|ref|YP_004809374.1| - 1.2e-05 25.4 0.2 2.3e-05 24.4 0.2 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_19 PF12844.2 gi|345006521|ref|YP_004809374.1| - 0.0002 21.3 0.0 0.00036 20.5 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_3 PF01381.17 gi|345006521|ref|YP_004809374.1| - 0.00099 18.9 1.1 0.0027 17.5 0.0 2.0 2 0 0 2 2 2 1 Helix-turn-helix PhnA_Zn_Ribbon PF08274.7 gi|345006521|ref|YP_004809374.1| - 0.012 15.3 0.2 0.025 14.3 0.2 1.5 1 1 0 1 1 1 0 PhnA Zinc-Ribbon HTH_25 PF13413.1 gi|345006521|ref|YP_004809374.1| - 0.013 15.0 0.2 0.013 15.0 0.1 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain NinG PF05766.7 gi|345006521|ref|YP_004809374.1| - 0.042 13.6 0.1 0.054 13.2 0.1 1.1 1 0 0 1 1 1 0 Bacteriophage Lambda NinG protein Sigma70_r3 PF04539.11 gi|345006521|ref|YP_004809374.1| - 0.045 13.6 0.4 0.1 12.4 0.3 1.5 1 0 0 1 1 1 0 Sigma-70 region 3 Sigma70_r4_2 PF08281.7 gi|345006521|ref|YP_004809374.1| - 0.065 12.7 0.1 0.12 11.8 0.0 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 EamA PF00892.15 gi|345006522|ref|YP_004809375.1| - 9.1e-22 77.4 26.2 1.1e-14 54.5 7.6 2.3 1 1 0 2 2 2 2 EamA-like transporter family EmrE PF13536.1 gi|345006522|ref|YP_004809375.1| - 2e-11 44.0 23.5 6.6e-08 32.7 5.0 2.3 2 0 0 2 2 2 2 Multidrug resistance efflux transporter YtpI PF14007.1 gi|345006522|ref|YP_004809375.1| - 9.3 6.2 13.3 3.8 7.4 0.5 3.1 3 1 0 3 3 3 0 YtpI-like protein ATP-grasp_2 PF08442.5 gi|345006523|ref|YP_004809376.1| - 1.6e-62 210.4 1.3 2.6e-62 209.8 0.9 1.3 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_5 PF13549.1 gi|345006523|ref|YP_004809376.1| - 4.2e-18 65.3 8.4 1.7e-17 63.3 3.9 2.6 2 1 0 2 2 2 1 ATP-grasp domain Ligase_CoA PF00549.14 gi|345006523|ref|YP_004809376.1| - 6.4e-12 45.3 1.7 1.4e-11 44.2 0.4 2.0 2 0 0 2 2 2 1 CoA-ligase CPSase_L_D2 PF02786.12 gi|345006523|ref|YP_004809376.1| - 2e-10 40.3 2.9 1.7e-07 30.7 0.4 2.2 2 0 0 2 2 2 2 Carbamoyl-phosphate synthase L chain, ATP binding domain ATP-grasp_4 PF13535.1 gi|345006523|ref|YP_004809376.1| - 2.1e-09 37.3 0.8 5.4e-09 36.0 0.1 1.9 2 0 0 2 2 2 1 ATP-grasp domain ATP-grasp PF02222.17 gi|345006523|ref|YP_004809376.1| - 3.6e-07 29.6 0.1 6.7e-07 28.8 0.1 1.4 1 0 0 1 1 1 1 ATP-grasp domain GARS_A PF01071.14 gi|345006523|ref|YP_004809376.1| - 7.4e-06 25.6 1.5 9.3e-06 25.3 0.2 1.8 2 0 0 2 2 2 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain Dala_Dala_lig_C PF07478.8 gi|345006523|ref|YP_004809376.1| - 0.009 15.4 0.2 0.028 13.8 0.1 1.9 1 1 0 1 1 1 1 D-ala D-ala ligase C-terminus ATPgrasp_Ter PF15632.1 gi|345006523|ref|YP_004809376.1| - 0.014 14.1 0.0 0.024 13.3 0.0 1.3 1 0 0 1 1 1 0 ATP-grasp in the biosynthetic pathway with Ter operon CoA_binding PF02629.14 gi|345006524|ref|YP_004809377.1| - 1.8e-22 79.6 5.3 2e-22 79.5 1.0 2.7 2 1 1 3 3 3 1 CoA binding domain Ligase_CoA PF00549.14 gi|345006524|ref|YP_004809377.1| - 1.5e-14 53.8 1.0 3e-14 52.8 0.7 1.5 1 0 0 1 1 1 1 CoA-ligase Succ_CoA_lig PF13607.1 gi|345006524|ref|YP_004809377.1| - 6.6e-10 38.7 0.0 1.1e-09 38.0 0.0 1.4 1 0 0 1 1 1 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.1 gi|345006524|ref|YP_004809377.1| - 8.5e-06 25.9 0.2 0.00054 20.1 0.1 2.3 2 0 0 2 2 2 1 CoA binding domain IlvN PF07991.7 gi|345006524|ref|YP_004809377.1| - 0.00023 20.5 0.2 0.00041 19.7 0.1 1.3 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain GFO_IDH_MocA PF01408.17 gi|345006524|ref|YP_004809377.1| - 0.12 12.8 0.5 0.38 11.2 0.2 1.9 2 0 0 2 2 2 0 Oxidoreductase family, NAD-binding Rossmann fold HTH_10 PF04967.7 gi|345006525|ref|YP_004809378.1| - 3.5e-14 52.0 0.0 5.5e-14 51.4 0.0 1.3 1 0 0 1 1 1 1 HTH DNA binding domain HTH_AsnC-type PF13404.1 gi|345006525|ref|YP_004809378.1| - 0.062 12.8 0.6 0.48 10.0 0.1 2.4 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain HTH_11 PF08279.7 gi|345006525|ref|YP_004809378.1| - 0.15 11.6 0.2 2.5 7.7 0.1 2.3 2 0 0 2 2 2 0 HTH domain PALP PF00291.20 gi|345006526|ref|YP_004809379.1| - 1.3e-57 195.3 5.6 1.5e-57 195.1 3.9 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme ACP_syn_III_C PF08541.5 gi|345006526|ref|YP_004809379.1| - 0.013 15.4 0.4 0.04 13.9 0.1 1.9 2 0 0 2 2 2 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal Nif11 PF07862.6 gi|345006527|ref|YP_004809380.1| - 0.071 13.0 0.2 0.32 10.9 0.1 2.0 1 1 0 1 1 1 0 Nitrogen fixation protein of unknown function Pribosyltran_N PF13793.1 gi|345006528|ref|YP_004809381.1| - 9.2e-23 80.1 0.0 2.9e-22 78.5 0.0 1.8 2 0 0 2 2 2 1 N-terminal domain of ribose phosphate pyrophosphokinase Pribosyltran PF00156.22 gi|345006528|ref|YP_004809381.1| - 1.7e-10 40.6 0.3 6e-10 38.9 0.1 2.0 2 0 0 2 2 2 1 Phosphoribosyl transferase domain PRTase_2 PF15609.1 gi|345006528|ref|YP_004809381.1| - 3.2e-05 23.3 0.1 0.002 17.4 0.1 2.3 1 1 1 2 2 2 1 Phosphoribosyl transferase Pribosyl_synth PF14572.1 gi|345006528|ref|YP_004809381.1| - 8.6e-05 22.3 0.2 0.00015 21.5 0.1 1.3 1 0 0 1 1 1 1 Phosphoribosyl synthetase-associated domain UPRTase PF14681.1 gi|345006528|ref|YP_004809381.1| - 0.00021 20.5 0.0 0.00039 19.6 0.0 1.4 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase Extensin-like_C PF06904.7 gi|345006528|ref|YP_004809381.1| - 0.033 13.9 0.2 0.049 13.4 0.2 1.2 1 0 0 1 1 1 0 Extensin-like protein C-terminus DAO PF01266.19 gi|345006529|ref|YP_004809382.1| - 7.5e-50 169.8 4.7 9.1e-50 169.5 3.3 1.0 1 0 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.9 gi|345006529|ref|YP_004809382.1| - 4.2e-07 30.0 1.8 1.5e-05 24.9 1.3 2.4 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|345006529|ref|YP_004809382.1| - 0.00035 20.7 3.7 0.01 15.9 2.6 2.3 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.19 gi|345006529|ref|YP_004809382.1| - 0.0013 17.6 8.6 0.0039 16.1 6.0 1.7 1 1 0 1 1 1 1 FAD binding domain FAD_binding_3 PF01494.14 gi|345006529|ref|YP_004809382.1| - 0.0015 17.7 0.4 0.0029 16.7 0.3 1.4 1 1 0 1 1 1 1 FAD binding domain TrkA_N PF02254.13 gi|345006529|ref|YP_004809382.1| - 0.027 14.4 1.8 0.067 13.2 0.4 2.2 2 0 0 2 2 2 0 TrkA-N domain Thi4 PF01946.12 gi|345006529|ref|YP_004809382.1| - 0.029 13.4 2.0 0.038 13.0 0.3 1.8 2 0 0 2 2 2 0 Thi4 family NAD_binding_8 PF13450.1 gi|345006529|ref|YP_004809382.1| - 0.033 14.1 0.6 0.033 14.1 0.4 2.6 2 0 0 2 2 2 0 NAD(P)-binding Rossmann-like domain ApbA PF02558.11 gi|345006529|ref|YP_004809382.1| - 0.033 13.6 1.0 0.068 12.6 0.7 1.5 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA GMC_oxred_N PF00732.14 gi|345006529|ref|YP_004809382.1| - 0.07 12.2 0.2 3.2 6.8 0.0 2.1 2 0 0 2 2 2 0 GMC oxidoreductase HI0933_like PF03486.9 gi|345006529|ref|YP_004809382.1| - 0.09 11.2 9.8 0.37 9.1 0.0 2.9 2 1 1 3 3 3 0 HI0933-like protein AlaDh_PNT_C PF01262.16 gi|345006529|ref|YP_004809382.1| - 0.092 12.3 0.3 0.52 9.8 0.1 2.2 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain ThiF PF00899.16 gi|345006529|ref|YP_004809382.1| - 0.19 11.5 0.8 0.41 10.4 0.6 1.6 1 0 0 1 1 1 0 ThiF family GDI PF00996.13 gi|345006529|ref|YP_004809382.1| - 0.23 9.7 0.0 3.2 5.9 0.0 2.0 2 0 0 2 2 2 0 GDP dissociation inhibitor NAD_binding_9 PF13454.1 gi|345006529|ref|YP_004809382.1| - 0.34 10.6 4.8 3.9 7.2 0.2 2.3 2 0 0 2 2 2 0 FAD-NAD(P)-binding Trp_halogenase PF04820.9 gi|345006529|ref|YP_004809382.1| - 0.88 8.1 2.7 0.74 8.3 0.0 1.9 1 1 1 2 2 2 0 Tryptophan halogenase Pyr_redox PF00070.22 gi|345006529|ref|YP_004809382.1| - 1.1 9.7 6.2 3.2 8.2 1.3 2.9 2 1 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Aminotran_3 PF00202.16 gi|345006530|ref|YP_004809383.1| - 9.3e-96 320.6 0.1 4.8e-95 318.2 0.0 1.8 2 0 0 2 2 2 1 Aminotransferase class-III Aminotran_1_2 PF00155.16 gi|345006530|ref|YP_004809383.1| - 0.0032 16.4 0.0 0.01 14.8 0.0 1.7 2 0 0 2 2 2 1 Aminotransferase class I and II HTH_24 PF13412.1 gi|345006531|ref|YP_004809384.1| - 2.5e-11 42.7 0.0 3.5e-11 42.2 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding AsnC_trans_reg PF01037.16 gi|345006531|ref|YP_004809384.1| - 3e-11 42.8 0.4 4.8e-11 42.2 0.2 1.3 1 0 0 1 1 1 1 AsnC family HTH_AsnC-type PF13404.1 gi|345006531|ref|YP_004809384.1| - 2e-06 27.1 0.0 3.4e-06 26.4 0.0 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain MarR_2 PF12802.2 gi|345006531|ref|YP_004809384.1| - 4.8e-05 22.9 0.0 8.1e-05 22.2 0.0 1.4 1 0 0 1 1 1 1 MarR family GYD PF08734.6 gi|345006531|ref|YP_004809384.1| - 0.00031 20.4 0.5 0.00057 19.5 0.3 1.6 1 1 0 1 1 1 1 GYD domain HTH_11 PF08279.7 gi|345006531|ref|YP_004809384.1| - 0.00059 19.4 0.0 0.001 18.6 0.0 1.3 1 0 0 1 1 1 1 HTH domain HTH_20 PF12840.2 gi|345006531|ref|YP_004809384.1| - 0.0011 18.7 0.0 0.0018 18.0 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|345006531|ref|YP_004809384.1| - 0.0017 17.9 0.1 0.003 17.1 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_10 PF04967.7 gi|345006531|ref|YP_004809384.1| - 0.0022 17.5 0.0 0.0037 16.8 0.0 1.4 1 0 0 1 1 1 1 HTH DNA binding domain HTH_27 PF13463.1 gi|345006531|ref|YP_004809384.1| - 0.0031 17.7 0.0 0.046 14.0 0.0 2.3 2 0 0 2 2 2 1 Winged helix DNA-binding domain EF1_GNE PF00736.14 gi|345006531|ref|YP_004809384.1| - 0.0085 15.7 2.0 0.019 14.6 0.0 2.4 2 2 0 2 2 2 1 EF-1 guanine nucleotide exchange domain HTH_IclR PF09339.5 gi|345006531|ref|YP_004809384.1| - 0.03 13.9 0.0 0.049 13.2 0.0 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain DDRGK PF09756.4 gi|345006531|ref|YP_004809384.1| - 0.03 13.7 0.0 0.046 13.1 0.0 1.3 1 0 0 1 1 1 0 DDRGK domain B-block_TFIIIC PF04182.7 gi|345006531|ref|YP_004809384.1| - 0.051 13.4 0.0 0.079 12.8 0.0 1.2 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC MarR PF01047.17 gi|345006531|ref|YP_004809384.1| - 0.07 12.8 0.0 0.13 11.9 0.0 1.4 1 0 0 1 1 1 0 MarR family HTH_WhiA PF02650.9 gi|345006531|ref|YP_004809384.1| - 0.098 13.0 0.0 0.25 11.7 0.0 1.6 2 0 0 2 2 1 0 WhiA C-terminal HTH domain HTH_Crp_2 PF13545.1 gi|345006531|ref|YP_004809384.1| - 0.1 12.3 0.0 0.21 11.4 0.0 1.4 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain SBP_bac_8 PF13416.1 gi|345006532|ref|YP_004809385.1| - 7e-19 68.6 0.5 9.1e-19 68.2 0.3 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.1 gi|345006532|ref|YP_004809385.1| - 4.2e-14 52.4 0.1 6.9e-14 51.7 0.1 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.20 gi|345006532|ref|YP_004809385.1| - 0.00016 21.5 1.6 0.00058 19.6 1.1 1.8 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein TAT_signal PF10518.4 gi|345006532|ref|YP_004809385.1| - 2.8 8.1 8.1 0.07 13.1 1.3 1.7 2 0 0 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence Peptidase_M24 PF00557.19 gi|345006533|ref|YP_004809386.1| - 9e-32 110.3 2.3 1.1e-31 109.9 1.6 1.1 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.13 gi|345006533|ref|YP_004809386.1| - 7.7e-09 36.1 0.0 1.5e-08 35.1 0.0 1.5 1 0 0 1 1 1 1 Creatinase/Prolidase N-terminal domain Aminotran_3 PF00202.16 gi|345006534|ref|YP_004809387.1| - 1.2e-54 185.4 0.0 1.6e-54 185.0 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-III Beta_elim_lyase PF01212.16 gi|345006534|ref|YP_004809387.1| - 0.001 18.3 0.0 0.0018 17.5 0.0 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase Fae PF08714.6 gi|345006534|ref|YP_004809387.1| - 0.087 12.5 0.0 0.15 11.7 0.0 1.3 1 0 0 1 1 1 0 Formaldehyde-activating enzyme (Fae) BPD_transp_1 PF00528.17 gi|345006535|ref|YP_004809388.1| - 8.5e-14 51.4 19.5 8.5e-14 51.4 13.5 2.2 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component DUF1980 PF09323.5 gi|345006535|ref|YP_004809388.1| - 1.2 8.8 5.1 1.4 8.5 0.1 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF1980) BPD_transp_1 PF00528.17 gi|345006536|ref|YP_004809389.1| - 1.7e-14 53.7 20.9 1.7e-14 53.7 14.5 1.9 1 1 1 2 2 2 2 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.22 gi|345006537|ref|YP_004809390.1| - 4.1e-34 117.8 0.0 9.2e-34 116.6 0.0 1.6 1 0 0 1 1 1 1 ABC transporter TOBE_2 PF08402.5 gi|345006537|ref|YP_004809390.1| - 4.5e-15 55.4 1.4 1.1e-14 54.1 0.3 2.1 1 1 1 2 2 2 1 TOBE domain AAA_21 PF13304.1 gi|345006537|ref|YP_004809390.1| - 2.8e-06 27.5 0.0 0.032 14.2 0.0 2.1 1 1 1 2 2 2 2 AAA domain TOBE PF03459.12 gi|345006537|ref|YP_004809390.1| - 6.8e-05 22.8 6.6 0.001 19.1 1.0 2.7 3 0 0 3 3 3 1 TOBE domain SMC_N PF02463.14 gi|345006537|ref|YP_004809390.1| - 0.0012 18.1 0.0 0.0022 17.2 0.0 1.4 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.1 gi|345006537|ref|YP_004809390.1| - 0.0014 17.7 0.0 0.0088 15.1 0.0 1.9 2 0 0 2 2 2 1 AAA ATPase domain AAA_29 PF13555.1 gi|345006537|ref|YP_004809390.1| - 0.0033 16.9 0.2 0.018 14.5 0.0 2.1 2 0 0 2 2 2 1 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|345006537|ref|YP_004809390.1| - 0.0042 17.0 0.0 0.0075 16.2 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|345006537|ref|YP_004809390.1| - 0.0043 17.1 0.1 0.1 12.7 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA PF00004.24 gi|345006537|ref|YP_004809390.1| - 0.006 16.7 0.2 0.092 12.9 0.1 2.3 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) DUF258 PF03193.11 gi|345006537|ref|YP_004809390.1| - 0.0093 15.1 0.0 0.021 13.9 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_25 PF13481.1 gi|345006537|ref|YP_004809390.1| - 0.03 13.7 0.0 0.18 11.1 0.0 2.1 2 0 0 2 2 2 0 AAA domain Rad17 PF03215.10 gi|345006537|ref|YP_004809390.1| - 0.19 10.3 0.1 0.28 9.8 0.0 1.1 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein AAA_14 PF13173.1 gi|345006537|ref|YP_004809390.1| - 0.34 10.8 1.5 0.97 9.3 0.0 2.4 3 2 0 3 3 2 0 AAA domain Iso_dh PF00180.15 gi|345006538|ref|YP_004809391.1| - 7.5e-56 189.5 0.0 1.3e-55 188.8 0.0 1.3 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase WLM PF08325.5 gi|345006538|ref|YP_004809391.1| - 0.0057 16.5 0.1 0.0096 15.8 0.1 1.3 1 0 0 1 1 1 1 WLM domain GARS_A PF01071.14 gi|345006539|ref|YP_004809392.1| - 2.2e-11 43.6 0.0 4.6e-11 42.6 0.0 1.5 2 0 0 2 2 2 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ATP-grasp_4 PF13535.1 gi|345006539|ref|YP_004809392.1| - 5.5e-10 39.2 0.0 1.2e-09 38.1 0.0 1.5 1 0 0 1 1 1 1 ATP-grasp domain GARS_C PF02843.11 gi|345006539|ref|YP_004809392.1| - 1.7e-08 34.5 0.0 3.6e-08 33.4 0.0 1.6 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, C domain SprT-like PF10263.4 gi|345006540|ref|YP_004809393.1| - 0.00067 19.3 0.1 0.00076 19.1 0.1 1.1 1 0 0 1 1 1 1 SprT-like family DUF45 PF01863.12 gi|345006540|ref|YP_004809393.1| - 0.013 15.3 2.6 0.021 14.6 1.3 1.6 1 1 0 1 1 1 0 Protein of unknown function DUF45 WLM PF08325.5 gi|345006540|ref|YP_004809393.1| - 0.035 13.9 0.1 0.042 13.7 0.1 1.2 1 0 0 1 1 1 0 WLM domain DAGK_cat PF00781.19 gi|345006541|ref|YP_004809394.1| - 1.5e-19 69.7 0.5 2.9e-19 68.7 0.3 1.4 1 1 0 1 1 1 1 Diacylglycerol kinase catalytic domain NAD_kinase PF01513.16 gi|345006541|ref|YP_004809394.1| - 0.1 11.3 0.3 0.19 10.4 0.2 1.4 1 0 0 1 1 1 0 ATP-NAD kinase PHP_C PF13263.1 gi|345006542|ref|YP_004809395.1| - 2.9e-17 61.8 0.2 1.7e-16 59.4 0.0 2.4 3 0 0 3 3 3 1 PHP-associated PHP PF02811.14 gi|345006542|ref|YP_004809395.1| - 0.15 11.8 0.5 2.3 7.9 0.3 2.4 1 1 0 1 1 1 0 PHP domain NAD_binding_1 PF00175.16 gi|345006543|ref|YP_004809396.1| - 3.8e-15 56.4 0.0 3.9e-13 49.9 0.0 2.3 1 1 0 1 1 1 1 Oxidoreductase NAD-binding domain FAD_binding_6 PF00970.19 gi|345006543|ref|YP_004809396.1| - 1.5e-14 53.9 0.0 2.5e-14 53.1 0.0 1.3 1 0 0 1 1 1 1 Oxidoreductase FAD-binding domain VMA21 PF09446.5 gi|345006544|ref|YP_004809397.1| - 0.16 11.8 5.6 0.28 11.1 3.9 1.4 1 0 0 1 1 1 0 VMA21-like domain PIG-F PF06699.6 gi|345006544|ref|YP_004809397.1| - 0.78 9.6 4.5 0.92 9.4 3.1 1.1 1 0 0 1 1 1 0 GPI biosynthesis protein family Pig-F Tetraspannin PF00335.15 gi|345006544|ref|YP_004809397.1| - 2 7.6 5.5 1.8 7.7 3.3 1.3 1 1 0 1 1 1 0 Tetraspanin family ABC_tran PF00005.22 gi|345006545|ref|YP_004809398.1| - 5e-32 111.0 0.0 6.5e-32 110.7 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|345006545|ref|YP_004809398.1| - 2.7e-12 47.2 0.0 7.3e-06 26.1 0.0 2.1 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|345006545|ref|YP_004809398.1| - 0.00065 18.9 0.1 0.02 14.0 0.0 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|345006545|ref|YP_004809398.1| - 0.00091 18.7 0.0 0.0017 17.8 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|345006545|ref|YP_004809398.1| - 0.0045 17.3 0.0 0.0052 17.1 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_10 PF12846.2 gi|345006545|ref|YP_004809398.1| - 0.021 14.2 0.3 0.051 13.0 0.1 1.7 2 0 0 2 2 2 0 AAA-like domain AAA_22 PF13401.1 gi|345006545|ref|YP_004809398.1| - 0.021 14.9 0.2 0.18 11.9 0.1 2.0 2 0 0 2 2 2 0 AAA domain AAA_5 PF07728.9 gi|345006545|ref|YP_004809398.1| - 0.027 14.2 0.0 0.046 13.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) MutS_V PF00488.16 gi|345006545|ref|YP_004809398.1| - 0.074 12.4 0.0 0.12 11.7 0.0 1.3 1 0 0 1 1 1 0 MutS domain V AAA_30 PF13604.1 gi|345006545|ref|YP_004809398.1| - 0.076 12.5 0.1 0.16 11.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain NB-ARC PF00931.17 gi|345006545|ref|YP_004809398.1| - 0.09 11.6 0.0 0.13 11.1 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain AAA_33 PF13671.1 gi|345006545|ref|YP_004809398.1| - 0.099 12.5 0.4 0.31 10.9 0.1 1.8 2 0 0 2 2 2 0 AAA domain SbcCD_C PF13558.1 gi|345006545|ref|YP_004809398.1| - 0.1 12.5 2.8 2 8.4 1.9 2.3 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_17 PF13207.1 gi|345006545|ref|YP_004809398.1| - 0.13 13.1 0.4 0.34 11.7 0.1 1.9 2 1 0 2 2 2 0 AAA domain AAA_16 PF13191.1 gi|345006545|ref|YP_004809398.1| - 0.14 12.1 0.0 0.38 10.7 0.0 1.8 1 1 0 1 1 1 0 AAA ATPase domain ABC_tran PF00005.22 gi|345006546|ref|YP_004809399.1| - 1.7e-28 99.6 0.0 2.3e-28 99.2 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|345006546|ref|YP_004809399.1| - 4.3e-18 66.3 0.5 1.1e-10 41.9 0.0 2.1 1 1 1 2 2 2 2 AAA domain BCA_ABC_TP_C PF12399.3 gi|345006546|ref|YP_004809399.1| - 1.5e-09 37.2 0.1 3.6e-09 36.0 0.1 1.6 1 0 0 1 1 1 1 Branched-chain amino acid ATP-binding cassette transporter AAA_23 PF13476.1 gi|345006546|ref|YP_004809399.1| - 6.4e-07 29.8 0.4 9.9e-07 29.2 0.3 1.3 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|345006546|ref|YP_004809399.1| - 0.00014 21.3 0.2 0.00025 20.5 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.14 gi|345006546|ref|YP_004809399.1| - 0.00018 20.7 0.1 0.06 12.5 0.1 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_30 PF13604.1 gi|345006546|ref|YP_004809399.1| - 0.0057 16.2 0.0 0.011 15.3 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|345006546|ref|YP_004809399.1| - 0.013 14.5 0.1 1 8.3 0.0 2.1 2 0 0 2 2 2 0 AAA ATPase domain SRP54 PF00448.17 gi|345006546|ref|YP_004809399.1| - 0.044 13.2 0.0 0.081 12.3 0.0 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain DUF258 PF03193.11 gi|345006546|ref|YP_004809399.1| - 0.11 11.6 0.0 0.19 10.9 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_22 PF13401.1 gi|345006546|ref|YP_004809399.1| - 0.14 12.2 0.4 0.79 9.8 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_19 PF13245.1 gi|345006546|ref|YP_004809399.1| - 0.15 11.8 1.4 0.4 10.4 0.9 2.0 1 1 0 1 1 1 0 Part of AAA domain BPD_transp_2 PF02653.11 gi|345006547|ref|YP_004809400.1| - 5.5e-49 166.5 41.7 3.5e-47 160.6 28.9 3.0 1 1 0 1 1 1 1 Branched-chain amino acid transport system / permease component BPD_transp_2 PF02653.11 gi|345006548|ref|YP_004809401.1| - 2.5e-36 125.0 38.5 4.1e-26 91.5 16.0 2.2 1 1 1 2 2 2 2 Branched-chain amino acid transport system / permease component Tox-WTIP PF15654.1 gi|345006548|ref|YP_004809401.1| - 0.22 11.1 3.3 0.24 11.0 0.5 2.3 2 0 0 2 2 2 0 Toxin with a conserved tryptophan and TIP tripeptide motif DUF4131 PF13567.1 gi|345006548|ref|YP_004809401.1| - 0.79 9.1 16.8 1.1 8.6 0.7 3.9 1 1 3 4 4 4 0 Domain of unknown function (DUF4131) MFS_1 PF07690.11 gi|345006549|ref|YP_004809402.1| - 8.1e-14 51.0 54.7 2.3e-13 49.5 27.9 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Hydantoinase_B PF02538.9 gi|345006550|ref|YP_004809403.1| - 7.3e-159 529.3 0.0 8.7e-159 529.1 0.0 1.0 1 0 0 1 1 1 1 Hydantoinase B/oxoprolinase Hydantoinase_A PF01968.13 gi|345006551|ref|YP_004809404.1| - 2.6e-99 331.9 6.5 3.8e-97 324.8 1.3 2.3 2 0 0 2 2 2 2 Hydantoinase/oxoprolinase Hydant_A_N PF05378.8 gi|345006551|ref|YP_004809404.1| - 7.7e-58 194.8 1.4 2.8e-56 189.7 0.0 2.9 3 0 0 3 3 3 1 Hydantoinase/oxoprolinase N-terminal region MutL PF13941.1 gi|345006551|ref|YP_004809404.1| - 0.051 11.8 3.4 1.3 7.3 0.3 2.2 2 0 0 2 2 2 0 MutL protein CAML PF14963.1 gi|345006551|ref|YP_004809404.1| - 0.08 12.2 0.1 0.14 11.5 0.1 1.3 1 0 0 1 1 1 0 Calcium signal-modulating cyclophilin ligand Peripla_BP_6 PF13458.1 gi|345006552|ref|YP_004809405.1| - 1.1e-52 179.5 9.2 1.6e-52 178.9 6.4 1.2 1 0 0 1 1 1 1 Periplasmic binding protein ANF_receptor PF01094.23 gi|345006552|ref|YP_004809405.1| - 6.2e-42 143.6 2.2 7.2e-42 143.4 1.6 1.0 1 0 0 1 1 1 1 Receptor family ligand binding region Peripla_BP_5 PF13433.1 gi|345006552|ref|YP_004809405.1| - 2.3e-16 59.5 1.6 1.7e-10 40.1 0.3 2.3 2 1 0 2 2 2 2 Periplasmic binding protein domain TAT_signal PF10518.4 gi|345006552|ref|YP_004809405.1| - 0.0041 17.0 2.3 0.013 15.4 1.6 2.0 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence RHH_1 PF01402.16 gi|345006553|ref|YP_004809406.1| - 6.1e-09 35.3 0.5 1e-08 34.6 0.0 1.6 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family SBP_bac_5 PF00496.17 gi|345006554|ref|YP_004809407.1| - 2.3e-56 191.2 3.2 3.3e-53 180.8 0.3 2.2 2 0 0 2 2 2 2 Bacterial extracellular solute-binding proteins, family 5 Middle BPD_transp_1 PF00528.17 gi|345006555|ref|YP_004809408.1| - 2.5e-32 111.9 10.6 2.5e-32 111.9 7.4 2.0 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component Glycos_trans_3N PF02885.12 gi|345006555|ref|YP_004809408.1| - 0.0094 15.5 0.7 4.7 6.8 0.0 2.5 2 0 0 2 2 2 2 Glycosyl transferase family, helical bundle domain Cation_ATPase_N PF00690.21 gi|345006555|ref|YP_004809408.1| - 0.047 13.1 0.1 0.22 11.0 0.0 2.1 2 0 0 2 2 2 0 Cation transporter/ATPase, N-terminus BPD_transp_1 PF00528.17 gi|345006556|ref|YP_004809409.1| - 7.4e-21 74.4 11.9 1.3e-20 73.7 8.3 1.4 1 0 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component DUF1270 PF06900.6 gi|345006556|ref|YP_004809409.1| - 0.064 13.3 1.5 0.25 11.4 1.0 2.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1270) OppC_N PF12911.2 gi|345006556|ref|YP_004809409.1| - 0.065 12.6 0.2 0.26 10.6 0.0 2.1 2 0 0 2 2 2 0 N-terminal TM domain of oligopeptide transport permease C ABC_tran PF00005.22 gi|345006557|ref|YP_004809410.1| - 6.5e-61 204.6 0.0 9.7e-32 110.1 0.0 2.3 2 0 0 2 2 2 2 ABC transporter oligo_HPY PF08352.7 gi|345006557|ref|YP_004809410.1| - 4.8e-37 126.1 2.0 5e-18 65.2 0.2 2.5 2 0 0 2 2 2 2 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|345006557|ref|YP_004809410.1| - 4.9e-15 56.2 0.9 2e-05 24.7 0.0 4.1 2 2 1 4 4 4 3 AAA domain AAA_22 PF13401.1 gi|345006557|ref|YP_004809410.1| - 6.1e-08 32.8 1.1 0.0044 17.1 0.0 3.6 2 2 0 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|345006557|ref|YP_004809410.1| - 3e-07 30.6 0.0 0.034 14.1 0.0 2.5 2 0 0 2 2 2 2 AAA ATPase domain AAA_29 PF13555.1 gi|345006557|ref|YP_004809410.1| - 1e-06 28.1 0.7 0.014 14.9 0.1 2.4 2 0 0 2 2 2 2 P-loop containing region of AAA domain SMC_N PF02463.14 gi|345006557|ref|YP_004809410.1| - 2.1e-06 27.1 1.2 0.00031 20.0 0.0 2.7 2 1 0 2 2 2 1 RecF/RecN/SMC N terminal domain DUF258 PF03193.11 gi|345006557|ref|YP_004809410.1| - 8.9e-06 24.9 0.1 0.065 12.4 0.0 2.7 2 0 0 2 2 2 2 Protein of unknown function, DUF258 AAA PF00004.24 gi|345006557|ref|YP_004809410.1| - 2.5e-05 24.4 0.0 0.27 11.4 0.0 2.7 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) PRK PF00485.13 gi|345006557|ref|YP_004809410.1| - 7.4e-05 22.3 0.0 0.18 11.3 0.0 2.3 2 0 0 2 2 2 2 Phosphoribulokinase / Uridine kinase family AAA_18 PF13238.1 gi|345006557|ref|YP_004809410.1| - 0.0001 22.5 0.0 0.32 11.3 0.0 3.0 3 0 0 3 3 2 2 AAA domain AAA_17 PF13207.1 gi|345006557|ref|YP_004809410.1| - 0.00016 22.4 0.0 0.73 10.6 0.0 2.7 2 0 0 2 2 2 2 AAA domain AAA_5 PF07728.9 gi|345006557|ref|YP_004809410.1| - 0.00028 20.6 0.0 0.08 12.6 0.0 2.5 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) NB-ARC PF00931.17 gi|345006557|ref|YP_004809410.1| - 0.00044 19.1 0.3 0.62 8.8 0.1 2.8 3 0 0 3 3 3 2 NB-ARC domain RNA_helicase PF00910.17 gi|345006557|ref|YP_004809410.1| - 0.00081 19.5 0.1 1.7 8.8 0.0 2.5 2 0 0 2 2 2 2 RNA helicase NTPase_1 PF03266.10 gi|345006557|ref|YP_004809410.1| - 0.0036 17.0 0.3 2.1 8.0 0.0 2.8 3 0 0 3 3 2 1 NTPase Sigma54_activat PF00158.21 gi|345006557|ref|YP_004809410.1| - 0.004 16.6 0.3 1.1 8.7 0.0 2.3 2 0 0 2 2 2 1 Sigma-54 interaction domain AAA_10 PF12846.2 gi|345006557|ref|YP_004809410.1| - 0.0046 16.4 0.3 19 4.5 0.0 3.2 3 0 0 3 3 3 0 AAA-like domain AAA_25 PF13481.1 gi|345006557|ref|YP_004809410.1| - 0.0053 16.1 0.1 5.8 6.2 0.0 3.1 3 0 0 3 3 3 0 AAA domain NACHT PF05729.7 gi|345006557|ref|YP_004809410.1| - 0.016 14.9 1.4 5.1 6.7 0.0 2.6 2 1 0 2 2 2 0 NACHT domain MMR_HSR1 PF01926.18 gi|345006557|ref|YP_004809410.1| - 0.019 14.8 0.0 5 7.1 0.0 2.8 2 1 0 2 2 2 0 50S ribosome-binding GTPase MobB PF03205.9 gi|345006557|ref|YP_004809410.1| - 0.021 14.5 0.3 10 5.8 0.0 2.8 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B IstB_IS21 PF01695.12 gi|345006557|ref|YP_004809410.1| - 0.024 14.0 0.0 6 6.2 0.0 2.5 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_33 PF13671.1 gi|345006557|ref|YP_004809410.1| - 0.031 14.1 0.2 3.9 7.3 0.0 2.8 3 0 0 3 3 3 0 AAA domain AAA_23 PF13476.1 gi|345006557|ref|YP_004809410.1| - 0.037 14.3 0.0 3.8 7.7 0.0 2.3 2 0 0 2 2 2 0 AAA domain KaiC PF06745.8 gi|345006557|ref|YP_004809410.1| - 0.046 12.8 0.3 1.2 8.1 0.0 2.4 2 0 0 2 2 2 0 KaiC AAA_19 PF13245.1 gi|345006557|ref|YP_004809410.1| - 0.054 13.2 0.1 9.2 6.1 0.0 2.9 3 0 0 3 3 3 0 Part of AAA domain Miro PF08477.8 gi|345006557|ref|YP_004809410.1| - 0.069 13.6 0.1 12 6.4 0.0 2.7 2 0 0 2 2 2 0 Miro-like protein Zeta_toxin PF06414.7 gi|345006557|ref|YP_004809410.1| - 0.072 12.1 0.1 6.8 5.7 0.0 2.5 2 0 0 2 2 2 0 Zeta toxin AAA_15 PF13175.1 gi|345006557|ref|YP_004809410.1| - 0.076 12.0 0.2 5.9 5.8 0.0 3.2 4 0 0 4 4 4 0 AAA ATPase domain Mg_chelatase PF01078.16 gi|345006557|ref|YP_004809410.1| - 0.085 12.0 0.0 3.9 6.5 0.0 2.6 3 0 0 3 3 3 0 Magnesium chelatase, subunit ChlI HpcH_HpaI PF03328.9 gi|345006558|ref|YP_004809411.1| - 3.3e-35 120.9 0.7 4.7e-35 120.4 0.5 1.2 1 0 0 1 1 1 1 HpcH/HpaI aldolase/citrate lyase family C-C_Bond_Lyase PF15617.1 gi|345006558|ref|YP_004809411.1| - 5e-11 42.0 0.0 2.1e-06 26.7 0.0 2.2 2 0 0 2 2 2 2 C-C_Bond_Lyase of the TIM-Barrel fold ATP-grasp_5 PF13549.1 gi|345006559|ref|YP_004809412.1| - 1e-62 211.3 0.4 1.8e-62 210.4 0.3 1.4 1 0 0 1 1 1 1 ATP-grasp domain Succ_CoA_lig PF13607.1 gi|345006559|ref|YP_004809412.1| - 8.1e-48 161.5 0.2 6.2e-44 148.9 0.1 3.5 3 0 0 3 3 3 2 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.1 gi|345006559|ref|YP_004809412.1| - 1.5e-22 79.9 2.3 3.5e-21 75.5 0.1 3.7 3 2 1 4 4 4 1 CoA binding domain CoA_binding PF02629.14 gi|345006559|ref|YP_004809412.1| - 2.8e-10 40.5 0.1 1.8e-09 37.9 0.0 2.5 3 0 0 3 3 3 1 CoA binding domain ATP-grasp_4 PF13535.1 gi|345006559|ref|YP_004809412.1| - 0.04 13.6 0.4 0.27 10.9 0.0 2.5 2 0 0 2 2 2 0 ATP-grasp domain HIT PF01230.18 gi|345006561|ref|YP_004809414.1| - 3.7e-23 81.9 0.1 4.5e-23 81.6 0.0 1.1 1 0 0 1 1 1 1 HIT domain DcpS_C PF11969.3 gi|345006561|ref|YP_004809414.1| - 9.1e-12 45.2 0.0 1.2e-11 44.8 0.0 1.1 1 0 0 1 1 1 1 Scavenger mRNA decapping enzyme C-term binding CwfJ_C_1 PF04677.10 gi|345006561|ref|YP_004809414.1| - 0.0031 17.1 0.0 0.0044 16.6 0.0 1.3 1 0 0 1 1 1 1 Protein similar to CwfJ C-terminus 1 CbiA PF01656.18 gi|345006562|ref|YP_004809415.1| - 2.4e-09 36.9 0.2 3.1e-09 36.5 0.1 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|345006562|ref|YP_004809415.1| - 3.2e-08 33.6 0.0 8.6e-08 32.2 0.0 1.7 1 1 0 1 1 1 1 AAA domain MipZ PF09140.6 gi|345006562|ref|YP_004809415.1| - 9.3e-06 24.9 1.0 0.037 13.1 0.0 2.1 1 1 0 2 2 2 2 ATPase MipZ YhjQ PF06564.7 gi|345006562|ref|YP_004809415.1| - 0.012 14.9 0.8 0.63 9.3 0.5 2.2 2 0 0 2 2 2 0 YhjQ protein Glyco_trans_4_4 PF13579.1 gi|345006562|ref|YP_004809415.1| - 0.2 11.7 10.1 0.52 10.4 7.0 1.7 1 1 0 1 1 1 0 Glycosyl transferase 4-like domain VirC1 PF07015.6 gi|345006562|ref|YP_004809415.1| - 0.26 10.3 1.8 0.35 9.9 0.5 1.6 2 0 0 2 2 2 0 VirC1 protein TFIIB PF00382.14 gi|345006564|ref|YP_004809417.1| - 2e-32 110.7 3.2 1.7e-15 56.5 0.1 2.3 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.7 gi|345006564|ref|YP_004809417.1| - 1.4e-09 37.0 2.4 2.4e-09 36.3 1.7 1.4 1 0 0 1 1 1 1 TFIIB zinc-binding Prok-RING_1 PF14446.1 gi|345006564|ref|YP_004809417.1| - 0.075 12.7 2.0 0.11 12.1 0.8 1.7 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 AAA_22 PF13401.1 gi|345006564|ref|YP_004809417.1| - 0.08 13.0 0.2 3.3 7.8 0.1 2.3 1 1 0 1 1 1 0 AAA domain Cyclin_N PF00134.18 gi|345006564|ref|YP_004809417.1| - 0.092 12.3 0.0 0.15 11.6 0.0 1.3 1 0 0 1 1 1 0 Cyclin, N-terminal domain zinc-ribbons_6 PF07191.7 gi|345006564|ref|YP_004809417.1| - 0.097 12.4 0.2 0.2 11.4 0.1 1.5 1 0 0 1 1 1 0 zinc-ribbons DZR PF12773.2 gi|345006564|ref|YP_004809417.1| - 0.1 12.4 1.7 0.32 10.8 0.7 2.0 2 0 0 2 2 2 0 Double zinc ribbon CbiA PF01656.18 gi|345006565|ref|YP_004809418.1| - 2.4e-17 62.9 0.0 3.1e-17 62.6 0.0 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain Fer4_NifH PF00142.13 gi|345006565|ref|YP_004809418.1| - 0.00067 18.9 0.0 0.74 8.9 0.0 2.1 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA_31 PF13614.1 gi|345006565|ref|YP_004809418.1| - 0.0016 18.4 0.0 0.0099 15.8 0.0 2.0 1 1 0 1 1 1 1 AAA domain MipZ PF09140.6 gi|345006565|ref|YP_004809418.1| - 0.0036 16.4 0.1 0.0092 15.0 0.1 1.6 1 1 0 1 1 1 1 ATPase MipZ ParA PF10609.4 gi|345006565|ref|YP_004809418.1| - 0.0045 16.8 0.0 0.0088 15.9 0.0 1.4 1 0 0 1 1 1 1 ParA/MinD ATPase like ArsA_ATPase PF02374.10 gi|345006565|ref|YP_004809418.1| - 0.01 14.8 0.2 0.094 11.7 0.5 1.9 2 0 0 2 2 2 0 Anion-transporting ATPase AAA_33 PF13671.1 gi|345006565|ref|YP_004809418.1| - 0.011 15.6 0.0 0.018 14.8 0.0 1.6 1 1 0 1 1 1 0 AAA domain AAA_17 PF13207.1 gi|345006565|ref|YP_004809418.1| - 0.082 13.7 0.0 0.18 12.6 0.0 1.7 1 1 0 1 1 1 0 AAA domain AAA_26 PF13500.1 gi|345006565|ref|YP_004809418.1| - 0.19 11.2 0.4 0.44 10.1 0.0 1.8 2 0 0 2 2 2 0 AAA domain SH3BP5 PF05276.9 gi|345006567|ref|YP_004809420.1| - 0.023 14.0 10.2 0.032 13.5 6.9 1.4 1 1 0 1 1 1 0 SH3 domain-binding protein 5 (SH3BP5) AAA_27 PF13514.1 gi|345006567|ref|YP_004809420.1| - 0.18 9.4 24.1 0.33 8.5 16.7 1.3 1 1 0 1 1 1 0 AAA domain DASH_Spc19 PF08287.6 gi|345006567|ref|YP_004809420.1| - 0.22 11.1 5.7 0.36 10.4 3.9 1.3 1 0 0 1 1 1 0 Spc19 Atg14 PF10186.4 gi|345006567|ref|YP_004809420.1| - 7.9 5.3 9.6 5.8 5.7 5.5 1.5 1 1 1 2 2 2 0 UV radiation resistance protein and autophagy-related subunit 14 DUF835 PF05763.7 gi|345006569|ref|YP_004809422.1| - 0.017 14.6 0.0 0.04 13.4 0.0 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF835) RRP7 PF12923.2 gi|345006570|ref|YP_004809423.1| - 0.0035 17.3 0.2 0.0043 17.0 0.1 1.2 1 0 0 1 1 1 1 Ribosomal RNA-processing protein 7 (RRP7) MCM PF00493.18 gi|345006571|ref|YP_004809424.1| - 8.3e-122 406.1 0.1 3.3e-99 331.8 0.0 2.3 2 0 0 2 2 2 2 MCM2/3/5 family MCM_N PF14551.1 gi|345006571|ref|YP_004809424.1| - 4.6e-13 49.7 2.6 1.1e-12 48.4 0.2 2.6 3 0 0 3 3 3 1 MCM N-terminal domain Intein_splicing PF14890.1 gi|345006571|ref|YP_004809424.1| - 1e-10 41.0 0.0 5.3e-08 32.1 0.0 3.0 3 0 0 3 3 3 2 Intein splicing domain HTH_3 PF01381.17 gi|345006571|ref|YP_004809424.1| - 1.9e-08 33.9 0.0 4.8e-08 32.7 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix Mg_chelatase PF01078.16 gi|345006571|ref|YP_004809424.1| - 4e-08 32.6 0.0 1.1e-05 24.6 0.0 2.3 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI HTH_31 PF13560.1 gi|345006571|ref|YP_004809424.1| - 7.7e-07 29.2 1.5 1.2e-06 28.6 0.1 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_19 PF12844.2 gi|345006571|ref|YP_004809424.1| - 0.00013 21.9 0.0 0.0006 19.8 0.0 2.2 1 0 0 1 1 1 1 Helix-turn-helix domain Tricorn_PDZ PF14685.1 gi|345006572|ref|YP_004809425.1| - 0.11 12.2 0.0 0.12 12.1 0.0 1.1 1 0 0 1 1 1 0 Tricorn protease PDZ domain SWIM PF04434.12 gi|345006573|ref|YP_004809426.1| - 0.003 16.9 0.2 0.0044 16.4 0.2 1.2 1 0 0 1 1 1 1 SWIM zinc finger TRAM PF01938.15 gi|345006574|ref|YP_004809427.1| - 1.2e-08 34.5 0.3 1.8e-08 34.0 0.2 1.3 1 0 0 1 1 1 1 TRAM domain DUF2457 PF10446.4 gi|345006574|ref|YP_004809427.1| - 0.00089 18.0 14.1 0.00098 17.9 9.8 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2457) CDC45 PF02724.9 gi|345006574|ref|YP_004809427.1| - 0.036 12.1 9.8 0.043 11.8 6.8 1.0 1 0 0 1 1 1 0 CDC45-like protein DUF1510 PF07423.6 gi|345006574|ref|YP_004809427.1| - 0.062 12.6 7.0 0.077 12.3 4.9 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1510) CDC27 PF09507.5 gi|345006574|ref|YP_004809427.1| - 0.36 10.0 9.0 0.44 9.7 6.2 1.1 1 0 0 1 1 1 0 DNA polymerase subunit Cdc27 Nop14 PF04147.7 gi|345006574|ref|YP_004809427.1| - 0.44 8.3 13.3 0.47 8.2 9.2 1.0 1 0 0 1 1 1 0 Nop14-like family Sigma70_ner PF04546.8 gi|345006574|ref|YP_004809427.1| - 0.82 9.2 14.8 1.2 8.7 10.2 1.3 1 0 0 1 1 1 0 Sigma-70, non-essential region Daxx PF03344.10 gi|345006574|ref|YP_004809427.1| - 0.98 7.8 15.2 1.2 7.5 10.5 1.0 1 0 0 1 1 1 0 Daxx Family NOA36 PF06524.7 gi|345006574|ref|YP_004809427.1| - 6.2 5.9 10.7 8.3 5.5 7.4 1.2 1 0 0 1 1 1 0 NOA36 protein SDA1 PF05285.7 gi|345006574|ref|YP_004809427.1| - 7.3 5.7 16.5 9.4 5.4 11.4 1.1 1 0 0 1 1 1 0 SDA1 DUF2890 PF11081.3 gi|345006574|ref|YP_004809427.1| - 8.1 6.4 14.3 10 6.1 9.9 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2890) TFX_C PF14601.1 gi|345006575|ref|YP_004809428.1| - 4.9e-31 106.3 0.0 7.1e-31 105.8 0.0 1.2 1 0 0 1 1 1 1 DNA_binding protein, TFX, C-term Sigma70_r4 PF04545.11 gi|345006575|ref|YP_004809428.1| - 0.0007 18.8 0.3 0.0014 17.9 0.2 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_31 PF13560.1 gi|345006575|ref|YP_004809428.1| - 0.00079 19.5 1.7 0.0018 18.4 1.2 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain GerE PF00196.14 gi|345006575|ref|YP_004809428.1| - 0.0027 16.9 0.1 0.0044 16.3 0.1 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family HTH_23 PF13384.1 gi|345006575|ref|YP_004809428.1| - 0.019 14.6 0.7 0.046 13.3 0.2 1.8 2 0 0 2 2 2 0 Homeodomain-like domain MarR_2 PF12802.2 gi|345006575|ref|YP_004809428.1| - 0.051 13.2 0.2 0.12 12.0 0.1 1.6 1 0 0 1 1 1 0 MarR family DUF134 PF02001.11 gi|345006575|ref|YP_004809428.1| - 0.07 13.0 0.1 0.13 12.1 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function DUF134 HTH_19 PF12844.2 gi|345006575|ref|YP_004809428.1| - 0.085 12.9 0.0 0.43 10.6 0.0 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_28 PF13518.1 gi|345006575|ref|YP_004809428.1| - 0.1 12.6 0.4 0.35 10.9 0.2 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_7 PF02796.10 gi|345006575|ref|YP_004809428.1| - 0.11 12.3 0.1 0.3 10.9 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain of resolvase NTP_transferase PF00483.18 gi|345006576|ref|YP_004809429.1| - 1.5e-33 116.1 0.0 2.4e-33 115.4 0.0 1.3 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.2 gi|345006576|ref|YP_004809429.1| - 6.4e-07 29.5 0.1 6.4e-07 29.5 0.1 2.4 2 1 0 2 2 2 1 MobA-like NTP transferase domain MannoseP_isomer PF01050.13 gi|345006576|ref|YP_004809429.1| - 0.0022 17.6 0.2 0.0037 16.8 0.1 1.3 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase OrfB_Zn_ribbon PF07282.6 gi|345006578|ref|YP_004809431.1| - 2.9e-22 78.1 0.5 2.4e-21 75.1 0.6 2.2 2 0 0 2 2 2 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.14 gi|345006578|ref|YP_004809431.1| - 6.2e-07 29.0 0.1 1e-06 28.3 0.1 1.6 1 1 0 1 1 1 1 Probable transposase C1_3 PF07649.7 gi|345006578|ref|YP_004809431.1| - 0.027 14.4 2.0 0.05 13.6 1.4 1.4 1 0 0 1 1 1 0 C1-like domain PHD PF00628.24 gi|345006578|ref|YP_004809431.1| - 0.36 10.5 3.5 0.24 11.1 0.9 1.8 2 0 0 2 2 2 0 PHD-finger tRNA_anti-codon PF01336.20 gi|345006579|ref|YP_004809432.1| - 0.02 14.7 1.4 0.057 13.2 0.0 2.4 4 0 0 4 4 4 0 OB-fold nucleic acid binding domain AAA_3 PF07726.6 gi|345006579|ref|YP_004809432.1| - 0.095 12.3 0.0 0.18 11.4 0.0 1.5 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) PqqD PF05402.7 gi|345006579|ref|YP_004809432.1| - 0.22 11.5 1.7 1.4 8.9 1.2 2.3 1 1 0 1 1 1 0 Coenzyme PQQ synthesis protein D (PqqD) CSD PF00313.17 gi|345006581|ref|YP_004809434.1| - 1.2e-20 73.0 0.1 1.3e-20 72.9 0.1 1.0 1 0 0 1 1 1 1 'Cold-shock' DNA-binding domain S1-like PF14444.1 gi|345006581|ref|YP_004809434.1| - 0.0039 16.8 3.2 0.0088 15.7 2.2 1.6 1 1 0 1 1 1 1 S1-like CusF_Ec PF11604.3 gi|345006581|ref|YP_004809434.1| - 0.018 14.8 0.0 0.023 14.5 0.0 1.3 1 0 0 1 1 1 0 Copper binding periplasmic protein CusF OB_RNB PF08206.6 gi|345006581|ref|YP_004809434.1| - 0.18 11.2 2.6 0.27 10.7 1.8 1.3 1 0 0 1 1 1 0 Ribonuclease B OB domain RHH_1 PF01402.16 gi|345006582|ref|YP_004809435.1| - 5.6e-06 26.0 0.2 1.3e-05 24.8 0.1 1.7 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family DUF4200 PF13863.1 gi|345006582|ref|YP_004809435.1| - 0.03 14.2 0.8 0.044 13.7 0.6 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4200) DSHCT PF08148.7 gi|345006583|ref|YP_004809436.1| - 0.0041 16.3 0.0 0.005 16.1 0.0 1.1 1 0 0 1 1 1 1 DSHCT (NUC185) domain CBS PF00571.23 gi|345006584|ref|YP_004809437.1| - 1.2e-29 101.7 1.4 2.6e-14 52.7 0.1 2.3 2 0 0 2 2 2 2 CBS domain Peptidase_M50 PF02163.17 gi|345006584|ref|YP_004809437.1| - 6.2e-21 74.2 15.8 1.7e-16 59.7 4.7 2.7 1 1 1 2 2 2 2 Peptidase family M50 Peptidase_M50B PF13398.1 gi|345006584|ref|YP_004809437.1| - 7.7e-05 22.1 3.8 7.7e-05 22.1 2.6 2.0 1 1 0 2 2 2 1 Peptidase M50B-like Peptidase_MA_2 PF13485.1 gi|345006584|ref|YP_004809437.1| - 0.068 13.2 0.0 0.12 12.3 0.0 1.4 1 0 0 1 1 1 0 Peptidase MA superfamily Cupin_2 PF07883.6 gi|345006585|ref|YP_004809438.1| - 1.8e-14 52.9 0.7 5.9e-12 44.9 0.5 2.1 1 1 0 1 1 1 1 Cupin domain Cupin_1 PF00190.17 gi|345006585|ref|YP_004809438.1| - 4.3e-10 39.1 0.0 6.3e-10 38.6 0.0 1.3 1 0 0 1 1 1 1 Cupin AraC_binding PF02311.14 gi|345006585|ref|YP_004809438.1| - 0.0017 18.0 0.0 0.0031 17.1 0.0 1.4 1 0 0 1 1 1 1 AraC-like ligand binding domain Cupin_3 PF05899.7 gi|345006585|ref|YP_004809438.1| - 0.011 15.1 0.0 0.016 14.5 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF861) DUF1272 PF06906.6 gi|345006586|ref|YP_004809439.1| - 0.078 12.8 2.4 0.8 9.5 1.7 2.0 1 1 0 1 1 1 0 Protein of unknown function (DUF1272) PhnA_Zn_Ribbon PF08274.7 gi|345006586|ref|YP_004809439.1| - 0.098 12.4 1.0 8.6 6.2 0.1 2.2 2 0 0 2 2 2 0 PhnA Zinc-Ribbon UPF0547 PF10571.4 gi|345006586|ref|YP_004809439.1| - 0.14 11.8 2.7 0.83 9.4 0.1 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Rubredoxin PF00301.15 gi|345006586|ref|YP_004809439.1| - 0.56 10.1 3.2 1.2 9.0 2.2 1.6 1 1 0 1 1 1 0 Rubredoxin DEAD PF00270.24 gi|345006587|ref|YP_004809440.1| - 2e-23 82.7 0.0 3.4e-23 81.9 0.0 1.3 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|345006587|ref|YP_004809440.1| - 1.2e-11 44.3 0.0 2.8e-11 43.1 0.0 1.7 1 0 0 1 1 1 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|345006587|ref|YP_004809440.1| - 1.5e-05 24.9 0.0 3.7e-05 23.6 0.0 1.6 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit CitMHS PF03600.11 gi|345006588|ref|YP_004809441.1| - 1.6e-41 142.0 0.0 2.1e-35 121.9 0.0 2.0 1 1 1 2 2 2 2 Citrate transporter TrkA_C PF02080.16 gi|345006588|ref|YP_004809441.1| - 1.8e-23 81.8 4.8 1.8e-13 49.8 0.3 2.5 2 0 0 2 2 2 2 TrkA-C domain Na_sulph_symp PF00939.14 gi|345006588|ref|YP_004809441.1| - 7.1e-22 77.9 38.4 4.5e-14 52.1 10.6 3.4 2 1 1 3 3 3 3 Sodium:sulfate symporter transmembrane region Smr PF01713.16 gi|345006589|ref|YP_004809442.1| - 0.094 12.9 0.0 0.32 11.2 0.0 1.9 2 1 0 2 2 2 0 Smr domain Phage_T4_Gp30_7 PF06919.6 gi|345006589|ref|YP_004809442.1| - 0.14 12.1 0.0 0.3 11.0 0.0 1.4 1 1 0 1 1 1 0 Phage Gp30.7 protein HTH_5 PF01022.15 gi|345006590|ref|YP_004809443.1| - 0.011 15.3 0.1 0.24 11.0 0.0 2.7 2 1 0 2 2 2 0 Bacterial regulatory protein, arsR family HARE-HTH PF05066.8 gi|345006590|ref|YP_004809443.1| - 0.047 14.0 0.0 0.08 13.2 0.0 1.3 1 0 0 1 1 1 0 HB1, ASXL, restriction endonuclease HTH domain HTH_20 PF12840.2 gi|345006590|ref|YP_004809443.1| - 0.056 13.2 0.1 0.76 9.6 0.1 2.3 1 1 0 1 1 1 0 Helix-turn-helix domain MarR_2 PF12802.2 gi|345006590|ref|YP_004809443.1| - 0.059 13.0 0.1 0.61 9.7 0.0 2.4 2 1 0 2 2 2 0 MarR family HTH_IclR PF09339.5 gi|345006590|ref|YP_004809443.1| - 0.061 12.9 0.3 0.43 10.2 0.1 2.3 2 1 0 2 2 2 0 IclR helix-turn-helix domain HTH_10 PF04967.7 gi|345006591|ref|YP_004809444.1| - 4.4e-16 58.1 0.0 7.5e-16 57.4 0.0 1.4 1 0 0 1 1 1 1 HTH DNA binding domain Sigma70_r4 PF04545.11 gi|345006591|ref|YP_004809444.1| - 2.4e-07 29.9 0.3 4.9e-07 28.9 0.2 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_AsnC-type PF13404.1 gi|345006591|ref|YP_004809444.1| - 0.0019 17.7 0.1 0.0034 16.8 0.1 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain Sigma70_r4_2 PF08281.7 gi|345006591|ref|YP_004809444.1| - 0.0021 17.4 0.1 0.16 11.4 0.0 2.4 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_24 PF13412.1 gi|345006591|ref|YP_004809444.1| - 0.0028 16.9 0.0 0.0051 16.1 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|345006591|ref|YP_004809444.1| - 0.0038 16.8 0.1 0.0085 15.7 0.1 1.7 1 1 0 1 1 1 1 MarR family HTH_3 PF01381.17 gi|345006591|ref|YP_004809444.1| - 0.11 12.3 0.0 0.68 9.8 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix Bax1-I PF01027.15 gi|345006592|ref|YP_004809445.1| - 4.2e-07 29.7 24.6 5.6e-07 29.3 17.0 1.1 1 0 0 1 1 1 1 Inhibitor of apoptosis-promoting Bax1 tRNA_anti-codon PF01336.20 gi|345006594|ref|YP_004809447.1| - 7.9e-30 102.5 11.8 8.7e-13 47.9 0.1 4.2 5 1 0 5 5 5 3 OB-fold nucleic acid binding domain Rep_fac-A_C PF08646.5 gi|345006594|ref|YP_004809447.1| - 0.00083 19.0 0.0 1.5 8.5 0.0 3.1 3 0 0 3 3 3 2 Replication factor-A C terminal domain SSB PF00436.20 gi|345006594|ref|YP_004809447.1| - 0.018 14.9 1.0 0.88 9.4 0.0 3.4 4 0 0 4 4 4 0 Single-strand binding protein family PMT_2 PF13231.1 gi|345006595|ref|YP_004809448.1| - 1.3e-11 44.6 8.0 1.3e-11 44.6 5.5 3.0 3 0 0 3 3 3 1 Dolichyl-phosphate-mannose-protein mannosyltransferase Epimerase PF01370.16 gi|345006597|ref|YP_004809450.1| - 7.8e-22 77.8 0.0 1.2e-21 77.2 0.0 1.3 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|345006597|ref|YP_004809450.1| - 2.2e-18 65.9 0.0 2.6e-18 65.7 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_10 PF13460.1 gi|345006597|ref|YP_004809450.1| - 9.6e-16 58.3 0.0 1.2e-15 57.9 0.0 1.1 1 0 0 1 1 1 1 NADH(P)-binding NAD_binding_4 PF07993.7 gi|345006597|ref|YP_004809450.1| - 1.5e-13 50.2 0.0 4.8e-12 45.3 0.0 2.0 2 0 0 2 2 2 1 Male sterility protein Polysacc_synt_2 PF02719.10 gi|345006597|ref|YP_004809450.1| - 4.7e-13 48.6 0.0 1.9e-09 36.8 0.0 2.6 2 1 0 2 2 2 2 Polysaccharide biosynthesis protein adh_short PF00106.20 gi|345006597|ref|YP_004809450.1| - 2.4e-06 27.5 0.1 4.5e-06 26.6 0.1 1.4 1 0 0 1 1 1 1 short chain dehydrogenase RmlD_sub_bind PF04321.12 gi|345006597|ref|YP_004809450.1| - 2.6e-06 26.5 0.0 7.2e-06 25.1 0.0 1.6 1 1 0 1 1 1 1 RmlD substrate binding domain Saccharop_dh PF03435.13 gi|345006597|ref|YP_004809450.1| - 3.6e-05 22.9 0.0 4.3e-05 22.6 0.0 1.2 1 0 0 1 1 1 1 Saccharopine dehydrogenase NmrA PF05368.8 gi|345006597|ref|YP_004809450.1| - 0.00051 19.3 0.0 0.0009 18.5 0.0 1.4 1 0 0 1 1 1 1 NmrA-like family TrkA_N PF02254.13 gi|345006597|ref|YP_004809450.1| - 0.0014 18.6 0.0 0.0021 18.0 0.0 1.4 1 0 0 1 1 1 1 TrkA-N domain KR PF08659.5 gi|345006597|ref|YP_004809450.1| - 0.034 13.8 1.9 0.13 11.9 1.3 1.9 1 1 0 1 1 1 0 KR domain DUF372 PF04036.7 gi|345006598|ref|YP_004809451.1| - 5.7e-20 70.4 0.1 8.4e-20 69.9 0.1 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF372) DUF381 PF04038.7 gi|345006598|ref|YP_004809451.1| - 2.1e-17 62.8 1.2 2.8e-17 62.4 0.9 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF381) GPW_gp25 PF04965.9 gi|345006598|ref|YP_004809451.1| - 0.0048 16.4 0.0 0.0059 16.1 0.0 1.2 1 0 0 1 1 1 1 Gene 25-like lysozyme UVR PF02151.14 gi|345006598|ref|YP_004809451.1| - 0.043 13.3 0.1 0.081 12.4 0.0 1.4 1 0 0 1 1 1 0 UvrB/uvrC motif DUF2524 PF10732.4 gi|345006599|ref|YP_004809452.1| - 0.0093 16.0 1.6 0.094 12.8 0.4 2.2 2 0 0 2 2 2 1 Protein of unknown function (DUF2524) AATF-Che1 PF13339.1 gi|345006599|ref|YP_004809452.1| - 0.025 14.7 1.8 0.26 11.4 0.1 2.4 1 1 1 2 2 2 0 Apoptosis antagonizing transcription factor PLU-1 PF08429.6 gi|345006599|ref|YP_004809452.1| - 0.033 13.0 0.1 0.043 12.7 0.0 1.2 1 0 0 1 1 1 0 PLU-1-like protein Laminin_II PF06009.7 gi|345006599|ref|YP_004809452.1| - 0.1 12.3 0.3 0.13 11.9 0.2 1.4 1 0 0 1 1 1 0 Laminin Domain II Syntaxin PF00804.20 gi|345006599|ref|YP_004809452.1| - 0.13 12.3 0.3 0.26 11.4 0.1 1.7 2 0 0 2 2 2 0 Syntaxin CorA PF01544.13 gi|345006599|ref|YP_004809452.1| - 0.21 10.5 0.8 0.26 10.3 0.5 1.2 1 0 0 1 1 1 0 CorA-like Mg2+ transporter protein DUF883 PF05957.8 gi|345006599|ref|YP_004809452.1| - 1.8 9.0 10.9 2.9 8.3 0.2 3.1 1 1 2 3 3 3 0 Bacterial protein of unknown function (DUF883) IncA PF04156.9 gi|345006599|ref|YP_004809452.1| - 1.9 8.0 6.5 2.1 7.9 2.5 1.9 1 1 1 2 2 2 0 IncA protein DUF4611 PF15387.1 gi|345006599|ref|YP_004809452.1| - 4 7.6 14.4 3 8.0 7.6 2.3 2 1 1 3 3 3 0 Domain of unknown function (DUF4611) Creatininase PF02633.9 gi|345006600|ref|YP_004809453.1| - 5.8e-71 238.3 1.4 6.5e-71 238.1 0.9 1.0 1 0 0 1 1 1 1 Creatinine amidohydrolase ABC_tran PF00005.22 gi|345006601|ref|YP_004809454.1| - 3.9e-35 121.1 0.0 6.6e-35 120.3 0.0 1.4 1 0 0 1 1 1 1 ABC transporter ABC_membrane PF00664.18 gi|345006601|ref|YP_004809454.1| - 1.6e-34 119.5 2.1 2.1e-34 119.2 1.4 1.1 1 0 0 1 1 1 1 ABC transporter transmembrane region AAA_21 PF13304.1 gi|345006601|ref|YP_004809454.1| - 2.5e-06 27.7 0.0 7.2e-05 22.8 0.0 2.8 2 1 0 2 2 1 1 AAA domain Zeta_toxin PF06414.7 gi|345006601|ref|YP_004809454.1| - 3e-05 23.2 0.0 6.8e-05 22.0 0.0 1.5 1 0 0 1 1 1 1 Zeta toxin DUF258 PF03193.11 gi|345006601|ref|YP_004809454.1| - 0.00016 20.9 0.0 0.00028 20.1 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_22 PF13401.1 gi|345006601|ref|YP_004809454.1| - 0.00023 21.3 0.1 0.0015 18.6 0.1 2.2 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|345006601|ref|YP_004809454.1| - 0.00028 21.6 0.2 0.0011 19.7 0.0 2.2 2 1 0 2 2 1 1 AAA domain AAA_18 PF13238.1 gi|345006601|ref|YP_004809454.1| - 0.0014 18.9 0.0 0.0048 17.2 0.0 2.0 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|345006601|ref|YP_004809454.1| - 0.0015 18.4 0.0 0.0036 17.1 0.0 1.7 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|345006601|ref|YP_004809454.1| - 0.0017 17.6 1.1 0.066 12.4 0.8 2.2 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|345006601|ref|YP_004809454.1| - 0.0018 17.7 0.1 0.0047 16.4 0.1 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|345006601|ref|YP_004809454.1| - 0.0035 17.7 0.1 0.0082 16.4 0.1 1.5 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|345006601|ref|YP_004809454.1| - 0.0077 16.2 0.2 0.024 14.6 0.2 1.8 1 1 0 1 1 1 1 AAA ATPase domain AAA PF00004.24 gi|345006601|ref|YP_004809454.1| - 0.022 14.9 0.0 0.24 11.5 0.0 2.3 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_10 PF12846.2 gi|345006601|ref|YP_004809454.1| - 0.025 14.0 0.2 0.19 11.1 0.0 2.1 1 1 0 2 2 2 0 AAA-like domain AAA_14 PF13173.1 gi|345006601|ref|YP_004809454.1| - 0.051 13.4 0.1 0.28 11.0 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_30 PF13604.1 gi|345006601|ref|YP_004809454.1| - 0.06 12.9 0.6 0.27 10.8 0.4 2.0 1 1 0 1 1 1 0 AAA domain T2SE PF00437.15 gi|345006601|ref|YP_004809454.1| - 0.061 12.2 0.1 0.14 11.0 0.0 1.6 2 0 0 2 2 2 0 Type II/IV secretion system protein MMR_HSR1 PF01926.18 gi|345006601|ref|YP_004809454.1| - 0.063 13.2 0.0 0.19 11.7 0.0 1.9 1 0 0 1 1 1 0 50S ribosome-binding GTPase AAA_5 PF07728.9 gi|345006601|ref|YP_004809454.1| - 0.079 12.6 0.1 0.63 9.7 0.0 2.3 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) ABC_membrane_3 PF13748.1 gi|345006601|ref|YP_004809454.1| - 0.1 11.5 0.1 1.5 7.7 0.0 2.1 2 0 0 2 2 2 0 ABC transporter transmembrane region MobB PF03205.9 gi|345006601|ref|YP_004809454.1| - 0.11 12.2 0.0 0.28 10.8 0.0 1.7 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B Guanylate_kin PF00625.16 gi|345006601|ref|YP_004809454.1| - 0.11 11.8 0.1 0.57 9.5 0.1 2.0 1 1 0 1 1 1 0 Guanylate kinase ABC_ATPase PF09818.4 gi|345006601|ref|YP_004809454.1| - 0.45 9.0 2.4 0.2 10.2 0.0 1.5 2 0 0 2 2 2 0 Predicted ATPase of the ABC class DUF192 PF02643.10 gi|345006603|ref|YP_004809456.1| - 1e-26 92.7 0.0 1.4e-26 92.2 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized ACR, COG1430 DUF3625 PF12293.3 gi|345006603|ref|YP_004809456.1| - 0.11 11.6 0.1 0.14 11.2 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3625) DUF2270 PF10028.4 gi|345006605|ref|YP_004809458.1| - 1.3e-61 207.3 1.9 1.5e-61 207.1 1.3 1.0 1 0 0 1 1 1 1 Predicted integral membrane protein (DUF2270) DUF302 PF03625.9 gi|345006606|ref|YP_004809459.1| - 1.8e-24 85.0 0.0 4.7e-24 83.7 0.0 1.7 2 0 0 2 2 2 1 Domain of unknown function DUF302 DrsE_2 PF13686.1 gi|345006607|ref|YP_004809460.1| - 1.6e-50 170.7 0.1 2e-50 170.3 0.0 1.1 1 0 0 1 1 1 1 DsrE/DsrF/DrsH-like family DrsE PF02635.10 gi|345006607|ref|YP_004809460.1| - 1.2e-05 25.3 0.6 0.00022 21.2 0.1 2.5 2 1 0 2 2 2 1 DsrE/DsrF-like family TusA PF01206.12 gi|345006608|ref|YP_004809461.1| - 7.7e-21 73.4 0.0 8.6e-21 73.3 0.0 1.0 1 0 0 1 1 1 1 Sulfurtransferase TusA Lactamase_B PF00753.22 gi|345006609|ref|YP_004809462.1| - 2.3e-21 76.3 6.1 2.3e-21 76.3 4.2 1.6 2 0 0 2 2 2 1 Metallo-beta-lactamase superfamily Rhodanese PF00581.15 gi|345006609|ref|YP_004809462.1| - 1.9e-10 41.0 0.0 3.5e-10 40.2 0.0 1.5 1 0 0 1 1 1 1 Rhodanese-like domain Lactamase_B_2 PF12706.2 gi|345006609|ref|YP_004809462.1| - 0.031 13.8 0.0 0.074 12.5 0.0 1.6 1 0 0 1 1 1 0 Beta-lactamase superfamily domain DUF4341 PF14241.1 gi|345006610|ref|YP_004809463.1| - 4.7e-16 58.2 9.9 3e-14 52.4 3.3 2.4 2 0 0 2 2 2 2 Domain of unknown function (DUF4341) Sulf_transp PF04143.9 gi|345006610|ref|YP_004809463.1| - 2.1e-11 43.6 15.8 1.6e-10 40.7 4.0 3.3 3 0 0 3 3 3 2 Sulphur transport Sulf_transp PF04143.9 gi|345006611|ref|YP_004809464.1| - 2e-08 34.1 11.4 2e-08 34.1 7.9 3.1 3 1 0 3 3 3 2 Sulphur transport TrmB PF01978.14 gi|345006612|ref|YP_004809465.1| - 3.9e-11 42.4 0.0 7.2e-11 41.6 0.0 1.5 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.5 gi|345006612|ref|YP_004809465.1| - 1.3e-07 31.0 0.1 2.4e-07 30.2 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain Penicillinase_R PF03965.11 gi|345006612|ref|YP_004809465.1| - 6.5e-06 26.2 0.0 8.8e-06 25.8 0.0 1.1 1 0 0 1 1 1 1 Penicillinase repressor HTH_20 PF12840.2 gi|345006612|ref|YP_004809465.1| - 1.4e-05 24.8 0.0 4.4e-05 23.1 0.0 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_11 PF08279.7 gi|345006612|ref|YP_004809465.1| - 5.8e-05 22.6 0.0 9.4e-05 21.9 0.0 1.3 1 0 0 1 1 1 1 HTH domain MarR_2 PF12802.2 gi|345006612|ref|YP_004809465.1| - 7.5e-05 22.3 0.3 0.00016 21.2 0.0 1.6 2 0 0 2 2 2 1 MarR family HTH_38 PF13936.1 gi|345006612|ref|YP_004809465.1| - 0.00077 18.9 0.0 0.0027 17.2 0.0 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_27 PF13463.1 gi|345006612|ref|YP_004809465.1| - 0.0023 18.2 0.1 0.053 13.8 0.0 2.2 2 0 0 2 2 2 1 Winged helix DNA-binding domain MarR PF01047.17 gi|345006612|ref|YP_004809465.1| - 0.0043 16.7 0.0 0.009 15.6 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|345006612|ref|YP_004809465.1| - 0.0063 15.8 0.0 0.01 15.1 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_29 PF13551.1 gi|345006612|ref|YP_004809465.1| - 0.014 15.5 0.0 0.018 15.1 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn helix HTH_5 PF01022.15 gi|345006612|ref|YP_004809465.1| - 0.049 13.3 0.0 0.11 12.1 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family DUF2080 PF09853.4 gi|345006613|ref|YP_004809466.1| - 0.0014 18.3 0.0 0.0015 18.1 0.0 1.1 1 0 0 1 1 1 1 Putative transposon-encoded protein (DUF2080) Calci_bind_CcbP PF11535.3 gi|345006614|ref|YP_004809467.1| - 9.2e-36 122.3 0.5 1.1e-35 122.1 0.3 1.0 1 0 0 1 1 1 1 Calcium binding PRiA4_ORF3 PF07929.6 gi|345006615|ref|YP_004809468.1| - 0.053 12.9 0.0 0.079 12.3 0.0 1.2 1 0 0 1 1 1 0 Plasmid pRiA4b ORF-3-like protein zf-C2H2 PF00096.21 gi|345006616|ref|YP_004809469.1| - 0.0025 18.0 0.3 0.0056 16.9 0.2 1.6 1 0 0 1 1 1 1 Zinc finger, C2H2 type zf-C2H2_6 PF13912.1 gi|345006616|ref|YP_004809469.1| - 0.0062 16.3 0.1 0.01 15.7 0.1 1.3 1 0 0 1 1 1 1 C2H2-type zinc finger Zn-ribbon_8 PF09723.5 gi|345006616|ref|YP_004809469.1| - 0.087 12.7 0.1 0.16 11.9 0.1 1.4 1 0 0 1 1 1 0 Zinc ribbon domain DUF1409 PF07197.7 gi|345006616|ref|YP_004809469.1| - 0.17 11.9 0.2 0.41 10.7 0.1 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF1409) SWIM PF04434.12 gi|345006617|ref|YP_004809470.1| - 0.00024 20.4 0.1 0.00046 19.5 0.1 1.5 1 0 0 1 1 1 1 SWIM zinc finger DUF1436 PF07262.6 gi|345006617|ref|YP_004809470.1| - 0.091 12.2 0.0 0.18 11.2 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1436) OrfB_IS605 PF01385.14 gi|345006618|ref|YP_004809471.1| - 1.7e-26 93.0 1.7 1.7e-26 93.0 1.2 1.7 1 1 1 2 2 2 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|345006618|ref|YP_004809471.1| - 9.8e-22 76.3 0.3 2e-21 75.3 0.2 1.6 1 0 0 1 1 1 1 Putative transposase DNA-binding domain HTH_OrfB_IS605 PF12323.3 gi|345006618|ref|YP_004809471.1| - 6.4e-05 22.1 0.1 0.00016 20.9 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain DZR PF12773.2 gi|345006618|ref|YP_004809471.1| - 0.23 11.2 2.9 0.42 10.4 2.0 1.4 1 0 0 1 1 1 0 Double zinc ribbon Zn_Tnp_IS91 PF14319.1 gi|345006618|ref|YP_004809471.1| - 0.47 9.9 3.0 0.25 10.8 0.4 1.8 2 0 0 2 2 2 0 Transposase zinc-binding domain zf-ribbon_3 PF13248.1 gi|345006618|ref|YP_004809471.1| - 1.2 8.4 4.2 4.9 6.4 0.7 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Cupin_2 PF07883.6 gi|345006619|ref|YP_004809472.1| - 3.5e-16 58.4 0.0 5.2e-16 57.9 0.0 1.3 1 0 0 1 1 1 1 Cupin domain Cupin_3 PF05899.7 gi|345006619|ref|YP_004809472.1| - 7.3e-05 22.0 0.0 0.00012 21.3 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF861) Cupin_1 PF00190.17 gi|345006619|ref|YP_004809472.1| - 0.0053 16.1 0.0 0.0087 15.5 0.0 1.3 1 0 0 1 1 1 1 Cupin AraC_binding PF02311.14 gi|345006619|ref|YP_004809472.1| - 0.013 15.2 0.1 0.019 14.6 0.0 1.2 1 0 0 1 1 1 0 AraC-like ligand binding domain GFO_IDH_MocA PF01408.17 gi|345006620|ref|YP_004809473.1| - 6e-22 78.4 0.2 9.4e-22 77.7 0.1 1.3 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.12 gi|345006620|ref|YP_004809473.1| - 3.8e-08 33.1 0.0 8.6e-08 31.9 0.0 1.5 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain Semialdhyde_dh PF01118.19 gi|345006620|ref|YP_004809473.1| - 0.0016 18.7 0.1 0.003 17.8 0.1 1.5 1 1 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain Saccharop_dh PF03435.13 gi|345006620|ref|YP_004809473.1| - 0.0019 17.2 0.2 0.0027 16.7 0.1 1.2 1 0 0 1 1 1 1 Saccharopine dehydrogenase HCBP_related PF06594.6 gi|345006620|ref|YP_004809473.1| - 0.079 12.6 0.1 0.26 10.9 0.0 2.0 1 0 0 1 1 1 0 Haemolysin-type calcium binding protein related domain CN_hydrolase PF00795.17 gi|345006621|ref|YP_004809474.1| - 8.3e-30 103.5 0.0 1.2e-29 102.9 0.0 1.2 1 0 0 1 1 1 1 Carbon-nitrogen hydrolase Polyketide_cyc2 PF10604.4 gi|345006622|ref|YP_004809475.1| - 1.8e-17 63.8 2.3 2e-17 63.6 1.6 1.0 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport COXG PF06240.8 gi|345006622|ref|YP_004809475.1| - 1.8e-07 30.9 0.0 3.4e-07 29.9 0.0 1.5 1 1 1 2 2 2 1 Carbon monoxide dehydrogenase subunit G (CoxG) DUF2505 PF10698.4 gi|345006622|ref|YP_004809475.1| - 0.00038 19.9 0.4 0.33 10.4 0.0 2.8 1 1 1 2 2 2 2 Protein of unknown function (DUF2505) Polyketide_cyc PF03364.15 gi|345006622|ref|YP_004809475.1| - 0.0004 20.3 0.1 0.00049 20.0 0.1 1.1 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport FaeA PF04703.7 gi|345006623|ref|YP_004809476.1| - 0.015 15.4 0.0 0.018 15.2 0.0 1.2 1 0 0 1 1 1 0 FaeA-like protein HTH_24 PF13412.1 gi|345006623|ref|YP_004809476.1| - 0.077 12.3 0.1 1 8.8 0.0 2.1 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding nec1 PF10379.4 gi|345006624|ref|YP_004809477.1| - 0.13 11.5 1.2 0.13 11.5 0.8 1.1 1 0 0 1 1 1 0 Virulence protein nec1 NUDIX PF00293.23 gi|345006625|ref|YP_004809478.1| - 7.7e-10 38.5 0.0 1e-09 38.1 0.0 1.2 1 0 0 1 1 1 1 NUDIX domain Asn_synthase PF00733.16 gi|345006626|ref|YP_004809479.1| - 4.3e-35 121.4 0.0 7.2e-35 120.7 0.0 1.3 1 0 0 1 1 1 1 Asparagine synthase NAD_synthase PF02540.12 gi|345006626|ref|YP_004809479.1| - 0.04 12.8 0.1 0.066 12.1 0.1 1.3 1 0 0 1 1 1 0 NAD synthase PHP_C PF13263.1 gi|345006627|ref|YP_004809480.1| - 3.7e-21 74.3 2.0 1.7e-20 72.2 0.4 2.2 2 0 0 2 2 2 1 PHP-associated PHP PF02811.14 gi|345006627|ref|YP_004809480.1| - 1.1e-18 67.6 1.8 2e-18 66.8 1.2 1.5 1 1 0 1 1 1 1 PHP domain AIRS PF00586.19 gi|345006628|ref|YP_004809481.1| - 8.3e-38 128.5 19.2 9.2e-25 86.7 0.3 4.0 4 0 0 4 4 4 2 AIR synthase related protein, N-terminal domain AIRS_C PF02769.17 gi|345006628|ref|YP_004809481.1| - 1.8e-33 115.7 7.8 5.2e-26 91.4 0.7 2.4 2 0 0 2 2 2 2 AIR synthase related protein, C-terminal domain UPF0233 PF06781.7 gi|345006629|ref|YP_004809482.1| - 0.14 11.8 0.1 0.16 11.5 0.1 1.2 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0233) AAA PF00004.24 gi|345006630|ref|YP_004809483.1| - 3.2e-92 305.6 0.0 7.5e-47 158.8 0.0 2.5 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) CDC48_N PF02359.13 gi|345006630|ref|YP_004809483.1| - 8.2e-21 73.7 0.1 4.8e-20 71.2 0.1 2.3 3 0 0 3 3 1 1 Cell division protein 48 (CDC48), N-terminal domain RuvB_N PF05496.7 gi|345006630|ref|YP_004809483.1| - 1e-12 47.5 0.0 1.2e-05 24.4 0.0 2.9 2 0 0 2 2 2 2 Holliday junction DNA helicase ruvB N-terminus AAA_16 PF13191.1 gi|345006630|ref|YP_004809483.1| - 1.9e-12 47.5 6.7 8.3e-07 29.1 0.0 3.8 3 1 0 3 3 2 2 AAA ATPase domain AAA_2 PF07724.9 gi|345006630|ref|YP_004809483.1| - 5.5e-11 42.6 0.0 2.4e-06 27.5 0.0 2.6 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) AAA_33 PF13671.1 gi|345006630|ref|YP_004809483.1| - 7.9e-11 42.0 0.0 0.00051 19.9 0.0 2.9 2 1 0 2 2 2 2 AAA domain AAA_22 PF13401.1 gi|345006630|ref|YP_004809483.1| - 1.1e-10 41.8 0.2 0.0002 21.4 0.0 3.8 2 2 1 3 3 3 2 AAA domain AAA_5 PF07728.9 gi|345006630|ref|YP_004809483.1| - 3e-10 39.9 0.2 8.8e-05 22.2 0.0 3.4 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA_17 PF13207.1 gi|345006630|ref|YP_004809483.1| - 5.8e-10 40.0 0.2 0.00012 22.8 0.0 3.1 3 0 0 3 3 2 2 AAA domain AAA_19 PF13245.1 gi|345006630|ref|YP_004809483.1| - 8.8e-10 38.2 2.5 0.00064 19.4 0.0 3.4 2 1 0 2 2 2 2 Part of AAA domain TIP49 PF06068.8 gi|345006630|ref|YP_004809483.1| - 1.3e-09 37.3 0.0 0.00017 20.4 0.0 2.3 2 0 0 2 2 2 2 TIP49 C-terminus Zeta_toxin PF06414.7 gi|345006630|ref|YP_004809483.1| - 1.4e-09 37.4 0.3 0.0018 17.4 0.0 3.1 3 0 0 3 3 3 2 Zeta toxin AAA_14 PF13173.1 gi|345006630|ref|YP_004809483.1| - 7.5e-08 32.3 0.0 0.0007 19.5 0.0 2.3 2 0 0 2 2 2 2 AAA domain AAA_28 PF13521.1 gi|345006630|ref|YP_004809483.1| - 3.5e-07 30.3 0.0 0.028 14.3 0.0 2.8 2 0 0 2 2 2 2 AAA domain CDC48_2 PF02933.12 gi|345006630|ref|YP_004809483.1| - 1.3e-06 27.9 0.1 3.3e-06 26.6 0.0 1.6 1 0 0 1 1 1 1 Cell division protein 48 (CDC48), domain 2 IstB_IS21 PF01695.12 gi|345006630|ref|YP_004809483.1| - 2.8e-06 26.8 1.2 0.031 13.6 0.0 2.3 2 0 0 2 2 2 2 IstB-like ATP binding protein AAA_18 PF13238.1 gi|345006630|ref|YP_004809483.1| - 3.3e-06 27.4 0.0 0.067 13.4 0.0 2.5 2 0 0 2 2 2 2 AAA domain AAA_3 PF07726.6 gi|345006630|ref|YP_004809483.1| - 5.4e-06 26.0 0.0 0.056 13.0 0.0 2.7 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.21 gi|345006630|ref|YP_004809483.1| - 7.7e-06 25.4 0.1 0.21 11.0 0.0 3.3 3 1 0 3 3 2 2 Sigma-54 interaction domain Mg_chelatase PF01078.16 gi|345006630|ref|YP_004809483.1| - 8.5e-06 25.0 0.6 0.08 12.0 0.0 2.4 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_25 PF13481.1 gi|345006630|ref|YP_004809483.1| - 1.7e-05 24.3 6.5 1.7 8.0 0.1 4.6 2 2 2 4 4 4 2 AAA domain RNA_helicase PF00910.17 gi|345006630|ref|YP_004809483.1| - 2.8e-05 24.2 0.0 0.055 13.6 0.0 2.4 2 0 0 2 2 2 2 RNA helicase DUF2075 PF09848.4 gi|345006630|ref|YP_004809483.1| - 3.3e-05 23.0 0.0 0.11 11.4 0.0 2.2 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) Sigma54_activ_2 PF14532.1 gi|345006630|ref|YP_004809483.1| - 6.4e-05 23.0 0.0 0.38 10.8 0.0 2.5 2 0 0 2 2 2 2 Sigma-54 interaction domain ABC_tran PF00005.22 gi|345006630|ref|YP_004809483.1| - 6.4e-05 23.2 0.0 0.2 11.9 0.0 2.5 2 0 0 2 2 2 2 ABC transporter NACHT PF05729.7 gi|345006630|ref|YP_004809483.1| - 0.00022 20.9 1.1 0.88 9.2 0.2 3.4 4 0 0 4 4 4 2 NACHT domain NB-ARC PF00931.17 gi|345006630|ref|YP_004809483.1| - 0.00022 20.1 0.0 0.15 10.8 0.0 2.2 2 0 0 2 2 2 2 NB-ARC domain PhoH PF02562.11 gi|345006630|ref|YP_004809483.1| - 0.00022 20.5 0.7 0.41 9.8 0.0 2.4 2 0 0 2 2 2 2 PhoH-like protein DUF815 PF05673.8 gi|345006630|ref|YP_004809483.1| - 0.00037 19.4 0.0 0.42 9.4 0.0 2.3 2 0 0 2 2 2 2 Protein of unknown function (DUF815) UPF0079 PF02367.12 gi|345006630|ref|YP_004809483.1| - 0.0004 20.0 0.1 0.7 9.5 0.0 2.4 2 0 0 2 2 2 2 Uncharacterised P-loop hydrolase UPF0079 Parvo_NS1 PF01057.12 gi|345006630|ref|YP_004809483.1| - 0.00056 18.8 0.2 0.36 9.6 0.0 2.2 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 KaiC PF06745.8 gi|345006630|ref|YP_004809483.1| - 0.00063 18.9 0.1 0.73 8.9 0.0 2.5 2 0 0 2 2 2 2 KaiC CPT PF07931.7 gi|345006630|ref|YP_004809483.1| - 0.00069 19.2 0.0 1 8.9 0.0 2.6 2 0 0 2 2 2 2 Chloramphenicol phosphotransferase-like protein AAA_11 PF13086.1 gi|345006630|ref|YP_004809483.1| - 0.00089 18.8 0.0 0.42 10.1 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_30 PF13604.1 gi|345006630|ref|YP_004809483.1| - 0.0014 18.2 0.1 0.75 9.3 0.0 2.6 2 0 0 2 2 2 1 AAA domain Torsin PF06309.6 gi|345006630|ref|YP_004809483.1| - 0.0017 18.2 0.0 3 7.7 0.0 2.5 2 0 0 2 2 2 2 Torsin Viral_helicase1 PF01443.13 gi|345006630|ref|YP_004809483.1| - 0.0064 16.0 0.0 2.8 7.4 0.0 2.2 2 0 0 2 2 2 1 Viral (Superfamily 1) RNA helicase SKI PF01202.17 gi|345006630|ref|YP_004809483.1| - 0.0065 16.3 0.0 1.5 8.7 0.0 2.7 2 0 0 2 2 2 1 Shikimate kinase ResIII PF04851.10 gi|345006630|ref|YP_004809483.1| - 0.011 15.6 0.0 2 8.2 0.0 2.3 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit NTPase_1 PF03266.10 gi|345006630|ref|YP_004809483.1| - 0.032 13.9 0.6 1.1 8.8 0.0 2.9 3 1 0 3 3 2 0 NTPase Cytidylate_kin2 PF13189.1 gi|345006630|ref|YP_004809483.1| - 0.035 14.0 0.0 2.9 7.7 0.0 2.4 2 0 0 2 2 2 0 Cytidylate kinase-like family TrkA_C PF02080.16 gi|345006630|ref|YP_004809483.1| - 0.049 13.2 0.4 0.29 10.7 0.0 2.5 3 0 0 3 3 1 0 TrkA-C domain AAA_24 PF13479.1 gi|345006630|ref|YP_004809483.1| - 0.064 12.8 1.0 5.8 6.4 0.0 2.3 2 0 0 2 2 2 0 AAA domain SRPRB PF09439.5 gi|345006630|ref|YP_004809483.1| - 0.26 10.4 0.0 1.3 8.2 0.0 1.9 2 0 0 2 2 2 0 Signal recognition particle receptor beta subunit DAP3 PF10236.4 gi|345006630|ref|YP_004809483.1| - 0.3 9.9 0.0 18 4.1 0.0 2.2 2 0 0 2 2 2 0 Mitochondrial ribosomal death-associated protein 3 Zot PF05707.7 gi|345006630|ref|YP_004809483.1| - 0.34 10.3 0.4 23 4.4 0.1 3.0 2 1 0 2 2 2 0 Zonular occludens toxin (Zot) DEAD_assoc PF08494.6 gi|345006631|ref|YP_004809484.1| - 7.5e-40 136.6 0.0 1.7e-39 135.4 0.0 1.6 1 0 0 1 1 1 1 DEAD/H associated DEAD PF00270.24 gi|345006631|ref|YP_004809484.1| - 5.4e-32 110.6 0.0 5.9e-31 107.2 0.0 2.1 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|345006631|ref|YP_004809484.1| - 1.5e-17 63.1 0.0 4e-17 61.8 0.0 1.7 1 0 0 1 1 1 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|345006631|ref|YP_004809484.1| - 2.4e-09 37.2 0.0 4.2e-09 36.4 0.0 1.3 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit SNF2_N PF00176.18 gi|345006631|ref|YP_004809484.1| - 7.7e-06 24.9 0.0 3.8e-05 22.6 0.0 1.8 2 0 0 2 2 2 1 SNF2 family N-terminal domain AAA_19 PF13245.1 gi|345006631|ref|YP_004809484.1| - 0.00021 21.0 0.0 0.0012 18.6 0.0 2.4 1 0 0 1 1 1 1 Part of AAA domain AAA_25 PF13481.1 gi|345006631|ref|YP_004809484.1| - 0.0014 18.0 0.3 0.0043 16.4 0.2 1.8 1 1 0 1 1 1 1 AAA domain UvrD-helicase PF00580.16 gi|345006631|ref|YP_004809484.1| - 0.014 14.7 0.0 0.028 13.6 0.0 1.4 1 0 0 1 1 1 0 UvrD/REP helicase N-terminal domain AAA_22 PF13401.1 gi|345006631|ref|YP_004809484.1| - 0.035 14.2 0.2 0.29 11.2 0.1 2.6 2 1 0 2 2 1 0 AAA domain HHH_5 PF14520.1 gi|345006631|ref|YP_004809484.1| - 0.042 14.0 0.1 2.7 8.2 0.2 3.1 2 0 0 2 2 2 0 Helix-hairpin-helix domain DUF1178 PF06676.6 gi|345006631|ref|YP_004809484.1| - 0.066 13.4 0.8 0.17 12.0 0.2 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF1178) Cor1 PF04803.7 gi|345006631|ref|YP_004809484.1| - 0.12 12.1 0.0 0.24 11.1 0.0 1.4 1 0 0 1 1 1 0 Cor1/Xlr/Xmr conserved region Zn-ribbon_8 PF09723.5 gi|345006631|ref|YP_004809484.1| - 0.14 12.1 0.7 0.41 10.6 0.5 1.8 1 0 0 1 1 1 0 Zinc ribbon domain Peptidase_M20 PF01546.23 gi|345006632|ref|YP_004809485.1| - 2.1e-18 66.5 5.7 4.1e-18 65.5 3.9 1.4 1 1 0 1 1 1 1 Peptidase family M20/M25/M40 Peptidase_M28 PF04389.12 gi|345006632|ref|YP_004809485.1| - 2e-07 30.9 0.3 4.2e-07 29.8 0.2 1.6 1 0 0 1 1 1 1 Peptidase family M28 M20_dimer PF07687.9 gi|345006632|ref|YP_004809485.1| - 3.3e-06 26.7 0.1 8.9e-06 25.4 0.0 1.7 1 0 0 1 1 1 1 Peptidase dimerisation domain Peptidase_M42 PF05343.9 gi|345006632|ref|YP_004809485.1| - 0.011 14.5 2.7 0.2 10.4 0.0 3.0 2 1 1 3 3 3 0 M42 glutamyl aminopeptidase Abhydrolase_6 PF12697.2 gi|345006633|ref|YP_004809486.1| - 1.6e-34 119.8 5.0 2e-34 119.4 3.5 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|345006633|ref|YP_004809486.1| - 2.6e-28 99.1 0.0 3.6e-28 98.6 0.0 1.2 1 0 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_5 PF12695.2 gi|345006633|ref|YP_004809486.1| - 5.5e-15 55.3 0.1 9.1e-14 51.4 0.1 2.1 1 1 0 1 1 1 1 Alpha/beta hydrolase family Peptidase_S9 PF00326.16 gi|345006633|ref|YP_004809486.1| - 3.5e-05 23.1 0.1 0.16 11.1 0.0 2.2 2 0 0 2 2 2 2 Prolyl oligopeptidase family Abhydrolase_4 PF08386.5 gi|345006633|ref|YP_004809486.1| - 0.0016 18.3 0.0 0.0058 16.5 0.0 1.8 2 0 0 2 2 2 1 TAP-like protein Ndr PF03096.9 gi|345006633|ref|YP_004809486.1| - 0.015 13.8 0.0 0.024 13.0 0.0 1.2 1 0 0 1 1 1 0 Ndr family Peptidase_M28 PF04389.12 gi|345006634|ref|YP_004809487.1| - 1.2e-14 54.5 0.1 2e-14 53.7 0.1 1.4 1 0 0 1 1 1 1 Peptidase family M28 EPSP_synthase PF00275.15 gi|345006635|ref|YP_004809488.1| - 5.6e-104 347.8 0.0 6.7e-104 347.6 0.0 1.0 1 0 0 1 1 1 1 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Phosphodiest PF01663.17 gi|345006636|ref|YP_004809489.1| - 4.7e-26 91.9 0.8 1.1e-25 90.7 0.6 1.5 1 1 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase PglZ PF08665.7 gi|345006636|ref|YP_004809489.1| - 4.4e-09 36.2 0.1 0.0011 18.6 0.2 2.3 2 0 0 2 2 2 2 PglZ domain Chorismate_synt PF01264.16 gi|345006637|ref|YP_004809490.1| - 3.2e-124 413.9 0.0 3.6e-124 413.7 0.0 1.0 1 0 0 1 1 1 1 Chorismate synthase CAP PF00188.21 gi|345006638|ref|YP_004809491.1| - 2.3e-17 63.6 0.1 3.1e-17 63.2 0.1 1.2 1 0 0 1 1 1 1 Cysteine-rich secretory protein family Gastrin PF00918.12 gi|345006638|ref|YP_004809491.1| - 0.00019 22.2 0.2 0.00055 20.7 0.0 1.7 2 0 0 2 2 2 1 Gastrin/cholecystokinin family PKD PF00801.15 gi|345006639|ref|YP_004809492.1| - 7.4e-05 22.4 26.7 0.0012 18.5 0.0 6.6 7 1 0 7 7 7 3 PKD domain PsbJ PF01788.12 gi|345006640|ref|YP_004809493.1| - 2.1 7.9 5.9 7.2 6.2 2.0 2.1 2 0 0 2 2 2 0 PsbJ Gram_pos_anchor PF00746.16 gi|345006640|ref|YP_004809493.1| - 3.2 7.6 5.7 14 5.6 0.5 2.3 2 0 0 2 2 2 0 Gram positive anchor POR PF01558.13 gi|345006641|ref|YP_004809494.1| - 9.3e-50 168.9 0.0 1.9e-49 167.9 0.0 1.5 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase POR_N PF01855.14 gi|345006641|ref|YP_004809494.1| - 3.9e-48 163.9 0.1 7.3e-48 163.0 0.0 1.5 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg TPP_enzyme_N PF02776.13 gi|345006641|ref|YP_004809494.1| - 2.9e-05 23.6 1.5 5e-05 22.8 0.1 2.1 3 0 0 3 3 3 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Transketolase_C PF02780.15 gi|345006641|ref|YP_004809494.1| - 0.00075 19.4 0.0 0.0019 18.1 0.0 1.6 1 0 0 1 1 1 1 Transketolase, C-terminal domain TPP_enzyme_C PF02775.16 gi|345006642|ref|YP_004809495.1| - 1.2e-31 109.4 0.0 1.8e-31 108.8 0.0 1.2 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PFO_beta_C PF12367.3 gi|345006642|ref|YP_004809495.1| - 0.011 15.6 0.2 0.028 14.3 0.1 1.8 1 0 0 1 1 1 0 Pyruvate ferredoxin oxidoreductase beta subunit C terminal HTH_24 PF13412.1 gi|345006643|ref|YP_004809496.1| - 2e-13 49.4 0.0 3.4e-13 48.7 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding AsnC_trans_reg PF01037.16 gi|345006643|ref|YP_004809496.1| - 3.5e-09 36.2 0.0 5.6e-09 35.5 0.0 1.4 1 0 0 1 1 1 1 AsnC family HTH_11 PF08279.7 gi|345006643|ref|YP_004809496.1| - 4.9e-09 35.6 0.6 1.3e-08 34.3 0.0 2.0 3 0 0 3 3 1 1 HTH domain HTH_20 PF12840.2 gi|345006643|ref|YP_004809496.1| - 2.6e-08 33.5 0.0 5.2e-08 32.5 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_AsnC-type PF13404.1 gi|345006643|ref|YP_004809496.1| - 3.3e-08 32.9 0.2 6.5e-08 31.9 0.1 1.5 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_5 PF01022.15 gi|345006643|ref|YP_004809496.1| - 1.1e-07 31.4 0.0 1.8e-07 30.6 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_DeoR PF08220.7 gi|345006643|ref|YP_004809496.1| - 1.6e-07 30.7 0.1 3.5e-07 29.6 0.1 1.5 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_IclR PF09339.5 gi|345006643|ref|YP_004809496.1| - 3.3e-07 29.7 0.0 6.3e-07 28.8 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR PF01047.17 gi|345006643|ref|YP_004809496.1| - 5.4e-07 29.2 0.0 1.1e-06 28.2 0.0 1.5 1 0 0 1 1 1 1 MarR family Fe_dep_repress PF01325.14 gi|345006643|ref|YP_004809496.1| - 3.1e-06 27.0 0.0 6.5e-06 25.9 0.0 1.5 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain TrmB PF01978.14 gi|345006643|ref|YP_004809496.1| - 1.3e-05 24.8 0.0 2.4e-05 23.9 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_23 PF13384.1 gi|345006643|ref|YP_004809496.1| - 1.8e-05 24.2 0.0 3.2e-05 23.4 0.0 1.5 1 0 0 1 1 1 1 Homeodomain-like domain MarR_2 PF12802.2 gi|345006643|ref|YP_004809496.1| - 1.8e-05 24.2 0.1 0.00014 21.4 0.0 2.1 2 0 0 2 2 2 1 MarR family HTH_36 PF13730.1 gi|345006643|ref|YP_004809496.1| - 4.4e-05 23.5 0.0 0.00015 21.8 0.0 1.9 1 1 1 2 2 2 1 Helix-turn-helix domain Rrf2 PF02082.15 gi|345006643|ref|YP_004809496.1| - 0.00012 22.1 0.0 0.00022 21.2 0.0 1.5 1 0 0 1 1 1 1 Transcriptional regulator HTH_28 PF13518.1 gi|345006643|ref|YP_004809496.1| - 0.00025 20.9 0.0 0.00041 20.2 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain GntR PF00392.16 gi|345006643|ref|YP_004809496.1| - 0.00031 20.1 0.0 0.00064 19.1 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_6 PF01418.12 gi|345006643|ref|YP_004809496.1| - 0.0012 18.5 0.0 0.0018 17.9 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain, rpiR family LacI PF00356.16 gi|345006643|ref|YP_004809496.1| - 0.0015 18.1 0.1 0.013 15.1 0.0 2.3 2 0 0 2 2 2 1 Bacterial regulatory proteins, lacI family FaeA PF04703.7 gi|345006643|ref|YP_004809496.1| - 0.0016 18.5 0.0 0.0026 17.8 0.0 1.3 1 0 0 1 1 1 1 FaeA-like protein TetR_N PF00440.18 gi|345006643|ref|YP_004809496.1| - 0.0018 17.8 0.0 0.0038 16.8 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family TFIIE_alpha PF02002.12 gi|345006643|ref|YP_004809496.1| - 0.0024 17.3 0.0 0.0041 16.6 0.0 1.3 1 0 0 1 1 1 1 TFIIE alpha subunit HTH_10 PF04967.7 gi|345006643|ref|YP_004809496.1| - 0.0028 17.2 0.0 0.0056 16.2 0.0 1.5 1 0 0 1 1 1 1 HTH DNA binding domain HTH_29 PF13551.1 gi|345006643|ref|YP_004809496.1| - 0.0028 17.7 0.0 0.0033 17.5 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn helix HTH_45 PF14947.1 gi|345006643|ref|YP_004809496.1| - 0.0028 17.4 0.0 0.0043 16.8 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_17 PF12728.2 gi|345006643|ref|YP_004809496.1| - 0.0033 17.6 0.0 0.0056 16.9 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain EAP30 PF04157.11 gi|345006643|ref|YP_004809496.1| - 0.0036 16.4 0.1 0.014 14.5 0.0 1.8 2 0 0 2 2 2 1 EAP30/Vps36 family HTH_Tnp_1 PF01527.15 gi|345006643|ref|YP_004809496.1| - 0.0068 16.3 0.0 0.01 15.7 0.0 1.3 1 0 0 1 1 1 1 Transposase HTH_1 PF00126.22 gi|345006643|ref|YP_004809496.1| - 0.01 15.5 0.0 0.021 14.5 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family MerR PF00376.18 gi|345006643|ref|YP_004809496.1| - 0.014 14.9 0.1 0.023 14.2 0.0 1.4 1 0 0 1 1 1 0 MerR family regulatory protein RPA_C PF08784.6 gi|345006643|ref|YP_004809496.1| - 0.014 15.8 0.0 0.027 14.9 0.0 1.5 1 0 0 1 1 1 0 Replication protein A C terminal FeoC PF09012.5 gi|345006643|ref|YP_004809496.1| - 0.019 14.6 0.0 0.029 14.0 0.0 1.3 1 0 0 1 1 1 0 FeoC like transcriptional regulator HTH_27 PF13463.1 gi|345006643|ref|YP_004809496.1| - 0.023 14.9 0.0 0.047 14.0 0.0 1.6 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_34 PF13601.1 gi|345006643|ref|YP_004809496.1| - 0.038 14.0 0.0 0.058 13.4 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain PqqD PF05402.7 gi|345006643|ref|YP_004809496.1| - 0.076 13.0 0.2 0.94 9.5 0.0 2.3 2 0 0 2 2 2 0 Coenzyme PQQ synthesis protein D (PqqD) Sigma70_r4_2 PF08281.7 gi|345006643|ref|YP_004809496.1| - 0.078 12.4 0.1 0.15 11.5 0.1 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_7 PF02796.10 gi|345006643|ref|YP_004809496.1| - 0.086 12.7 0.1 0.16 11.8 0.1 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase HTH_Tnp_ISL3 PF13542.1 gi|345006643|ref|YP_004809496.1| - 0.088 12.0 0.1 0.17 11.0 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 HTH_38 PF13936.1 gi|345006643|ref|YP_004809496.1| - 0.1 12.1 0.1 0.21 11.1 0.1 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain UPF0122 PF04297.9 gi|345006643|ref|YP_004809496.1| - 0.11 12.4 0.1 0.18 11.8 0.0 1.3 1 0 0 1 1 1 0 Putative helix-turn-helix protein, YlxM / p13 like HTH_3 PF01381.17 gi|345006643|ref|YP_004809496.1| - 0.13 12.1 0.1 0.3 10.9 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix HTH_Tnp_Tc3_2 PF01498.13 gi|345006643|ref|YP_004809496.1| - 0.13 12.3 0.2 0.21 11.6 0.1 1.3 1 0 0 1 1 1 0 Transposase HTH_Mga PF08280.6 gi|345006643|ref|YP_004809496.1| - 0.14 11.9 0.0 0.33 10.7 0.0 1.6 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain Sigma70_r3 PF04539.11 gi|345006643|ref|YP_004809496.1| - 0.14 12.0 0.4 0.36 10.7 0.1 1.8 2 0 0 2 2 2 0 Sigma-70 region 3 IMS PF00817.15 gi|345006644|ref|YP_004809497.1| - 2.7e-36 124.6 0.0 7.4e-36 123.1 0.0 1.7 2 0 0 2 2 2 1 impB/mucB/samB family IMS_C PF11799.3 gi|345006644|ref|YP_004809497.1| - 1e-15 57.7 0.1 1.9e-15 56.8 0.1 1.5 1 0 0 1 1 1 1 impB/mucB/samB family C-terminal domain IMS_HHH PF11798.3 gi|345006644|ref|YP_004809497.1| - 7.4e-08 32.0 0.0 1.6e-07 30.9 0.0 1.6 1 0 0 1 1 1 1 IMS family HHH motif DNA_pol_lambd_f PF10391.4 gi|345006644|ref|YP_004809497.1| - 0.0029 17.1 0.0 0.0056 16.1 0.0 1.4 1 0 0 1 1 1 1 Fingers domain of DNA polymerase lambda HHH_5 PF14520.1 gi|345006644|ref|YP_004809497.1| - 0.003 17.6 0.1 0.0088 16.2 0.0 1.9 1 0 0 1 1 1 1 Helix-hairpin-helix domain NPH3 PF03000.9 gi|345006644|ref|YP_004809497.1| - 0.15 11.5 0.1 0.28 10.6 0.0 1.3 1 0 0 1 1 1 0 NPH3 family Cdd1 PF11731.3 gi|345006644|ref|YP_004809497.1| - 0.16 11.9 0.0 0.86 9.5 0.0 2.1 2 0 0 2 2 2 0 Pathogenicity locus AAA_10 PF12846.2 gi|345006645|ref|YP_004809498.1| - 5.1e-21 75.3 0.5 1.1e-10 41.4 0.0 3.0 2 1 0 3 3 3 2 AAA-like domain DUF87 PF01935.12 gi|345006645|ref|YP_004809498.1| - 2.1e-09 37.5 1.0 3.9e-09 36.6 0.0 1.8 2 0 0 2 2 2 1 Domain of unknown function DUF87 DUF853 PF05872.7 gi|345006645|ref|YP_004809498.1| - 8.2e-05 21.1 3.2 0.00033 19.1 0.0 2.7 3 0 0 3 3 3 1 Bacterial protein of unknown function (DUF853) AAA_17 PF13207.1 gi|345006645|ref|YP_004809498.1| - 0.00054 20.7 0.3 0.003 18.3 0.0 2.3 2 0 0 2 2 2 1 AAA domain APS_kinase PF01583.15 gi|345006645|ref|YP_004809498.1| - 0.0013 18.3 0.1 0.0052 16.4 0.0 2.0 2 0 0 2 2 2 1 Adenylylsulphate kinase CbiA PF01656.18 gi|345006645|ref|YP_004809498.1| - 0.0051 16.2 0.0 0.011 15.2 0.0 1.5 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_16 PF13191.1 gi|345006645|ref|YP_004809498.1| - 0.0055 16.7 1.6 0.047 13.6 0.0 2.8 2 0 0 2 2 2 1 AAA ATPase domain Zot PF05707.7 gi|345006645|ref|YP_004809498.1| - 0.006 16.0 0.1 0.77 9.1 0.0 2.3 2 0 0 2 2 2 1 Zonular occludens toxin (Zot) TMF_DNA_bd PF12329.3 gi|345006645|ref|YP_004809498.1| - 0.0061 16.3 2.7 0.016 14.9 1.9 1.8 1 0 0 1 1 1 1 TATA element modulatory factor 1 DNA binding AAA PF00004.24 gi|345006645|ref|YP_004809498.1| - 0.0074 16.4 0.0 0.25 11.5 0.0 2.5 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Cortex-I_coil PF09304.5 gi|345006645|ref|YP_004809498.1| - 0.0096 15.9 3.0 0.026 14.5 2.1 1.7 1 0 0 1 1 1 1 Cortexillin I, coiled coil FtsK_SpoIIIE PF01580.13 gi|345006645|ref|YP_004809498.1| - 0.014 14.9 1.5 0.75 9.2 0.0 3.1 3 1 1 4 4 4 0 FtsK/SpoIIIE family MobB PF03205.9 gi|345006645|ref|YP_004809498.1| - 0.02 14.5 0.0 0.052 13.2 0.0 1.7 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_22 PF13401.1 gi|345006645|ref|YP_004809498.1| - 0.028 14.5 0.3 0.087 12.9 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_18 PF13238.1 gi|345006645|ref|YP_004809498.1| - 0.03 14.6 0.3 0.084 13.1 0.0 2.0 2 0 0 2 2 2 0 AAA domain DUF3584 PF12128.3 gi|345006645|ref|YP_004809498.1| - 0.062 10.6 5.8 0.09 10.1 4.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) DUF241 PF03087.9 gi|345006645|ref|YP_004809498.1| - 0.063 12.7 0.1 0.12 11.8 0.1 1.4 1 0 0 1 1 1 0 Arabidopsis protein of unknown function TrwB_AAD_bind PF10412.4 gi|345006645|ref|YP_004809498.1| - 0.066 11.8 0.0 0.14 10.7 0.0 1.5 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain IncA PF04156.9 gi|345006645|ref|YP_004809498.1| - 0.98 8.9 11.0 2.3 7.7 7.6 1.6 1 0 0 1 1 1 0 IncA protein DivIVA PF05103.8 gi|345006645|ref|YP_004809498.1| - 0.99 9.4 7.8 2.4 8.2 5.4 1.6 1 0 0 1 1 1 0 DivIVA protein TIM PF00121.13 gi|345006647|ref|YP_004809500.1| - 4e-20 71.9 0.6 1.1e-17 63.9 0.4 2.0 1 1 0 1 1 1 1 Triosephosphate isomerase ThiG PF05690.9 gi|345006647|ref|YP_004809500.1| - 0.00012 21.2 4.5 0.00012 21.2 3.1 2.0 2 0 0 2 2 2 1 Thiazole biosynthesis protein ThiG Hydrolase_like PF13242.1 gi|345006647|ref|YP_004809500.1| - 0.0022 17.6 3.3 0.08 12.6 0.4 2.5 2 0 0 2 2 2 2 HAD-hyrolase-like FMN_dh PF01070.13 gi|345006647|ref|YP_004809500.1| - 0.01 14.6 9.0 0.013 14.3 5.4 1.7 1 1 0 1 1 1 0 FMN-dependent dehydrogenase IGPS PF00218.16 gi|345006647|ref|YP_004809500.1| - 0.012 14.6 0.0 0.031 13.3 0.0 1.6 2 0 0 2 2 2 0 Indole-3-glycerol phosphate synthase Glu_synthase PF01645.12 gi|345006647|ref|YP_004809500.1| - 0.016 14.1 1.2 0.023 13.6 0.4 1.5 2 0 0 2 2 2 0 Conserved region in glutamate synthase NMO PF03060.10 gi|345006647|ref|YP_004809500.1| - 0.47 9.5 14.1 0.095 11.8 7.2 1.6 1 1 1 2 2 2 0 Nitronate monooxygenase HTH_3 PF01381.17 gi|345006648|ref|YP_004809501.1| - 1.2e-09 37.8 1.4 1.8e-09 37.2 1.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.2 gi|345006648|ref|YP_004809501.1| - 4.1e-07 29.9 1.3 8.6e-07 28.9 0.9 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_31 PF13560.1 gi|345006648|ref|YP_004809501.1| - 2.5e-06 27.5 0.1 4.3e-06 26.8 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_25 PF13413.1 gi|345006648|ref|YP_004809501.1| - 0.00087 18.8 1.2 0.0015 18.1 0.9 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain IATP PF04568.7 gi|345006648|ref|YP_004809501.1| - 0.0024 17.8 1.6 0.004 17.1 1.1 1.3 1 0 0 1 1 1 1 Mitochondrial ATPase inhibitor, IATP DUF3775 PF12616.3 gi|345006648|ref|YP_004809501.1| - 0.027 14.2 0.1 0.049 13.4 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3775) Period_C PF12114.3 gi|345006648|ref|YP_004809501.1| - 6.9 6.2 12.9 1 8.9 6.4 1.5 2 0 0 2 2 2 0 Period protein 2/3C-terminal region CDP-OH_P_transf PF01066.16 gi|345006649|ref|YP_004809502.1| - 9.2e-13 48.3 8.9 1.9e-12 47.3 6.1 1.7 1 1 0 1 1 1 1 CDP-alcohol phosphatidyltransferase AAA_18 PF13238.1 gi|345006650|ref|YP_004809503.1| - 5.9e-23 81.5 0.0 7.7e-23 81.2 0.0 1.1 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|345006650|ref|YP_004809503.1| - 3.2e-14 53.7 0.1 4.9e-14 53.1 0.1 1.3 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|345006650|ref|YP_004809503.1| - 5.1e-07 29.6 0.9 0.0043 16.9 0.0 2.4 1 1 1 2 2 2 2 AAA domain SKI PF01202.17 gi|345006650|ref|YP_004809503.1| - 7.1e-06 25.9 0.3 0.076 12.8 0.1 2.1 2 0 0 2 2 2 2 Shikimate kinase AAA_19 PF13245.1 gi|345006650|ref|YP_004809503.1| - 0.00021 20.9 1.0 0.00037 20.1 0.1 1.9 2 1 0 2 2 2 1 Part of AAA domain AAA_28 PF13521.1 gi|345006650|ref|YP_004809503.1| - 0.00037 20.4 3.5 0.0016 18.3 0.5 2.2 1 1 0 2 2 2 1 AAA domain AAA PF00004.24 gi|345006650|ref|YP_004809503.1| - 0.00061 19.9 0.4 0.00071 19.7 0.3 1.6 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) ArgK PF03308.11 gi|345006650|ref|YP_004809503.1| - 0.0017 17.1 0.7 0.0039 15.9 0.2 1.7 2 0 0 2 2 2 1 ArgK protein NTPase_1 PF03266.10 gi|345006650|ref|YP_004809503.1| - 0.0018 17.9 0.0 0.0051 16.5 0.0 1.8 2 0 0 2 2 2 1 NTPase ADK PF00406.17 gi|345006650|ref|YP_004809503.1| - 0.0027 17.6 0.2 0.53 10.1 0.0 2.2 2 0 0 2 2 2 1 Adenylate kinase AAA_16 PF13191.1 gi|345006650|ref|YP_004809503.1| - 0.0029 17.6 0.3 0.004 17.1 0.2 1.3 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|345006650|ref|YP_004809503.1| - 0.008 16.3 0.2 0.011 15.9 0.1 1.5 1 1 0 1 1 1 1 AAA domain ABC_tran PF00005.22 gi|345006650|ref|YP_004809503.1| - 0.0089 16.3 0.1 0.034 14.4 0.1 1.9 2 1 0 2 2 2 1 ABC transporter IstB_IS21 PF01695.12 gi|345006650|ref|YP_004809503.1| - 0.011 15.1 0.2 0.017 14.5 0.1 1.2 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_29 PF13555.1 gi|345006650|ref|YP_004809503.1| - 0.012 15.0 0.1 0.029 13.8 0.1 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain MMR_HSR1 PF01926.18 gi|345006650|ref|YP_004809503.1| - 0.016 15.1 0.0 0.028 14.3 0.0 1.6 1 1 0 1 1 1 0 50S ribosome-binding GTPase RuvB_N PF05496.7 gi|345006650|ref|YP_004809503.1| - 0.019 14.0 0.1 0.032 13.2 0.0 1.3 1 0 0 1 1 1 0 Holliday junction DNA helicase ruvB N-terminus APS_kinase PF01583.15 gi|345006650|ref|YP_004809503.1| - 0.024 14.3 0.0 0.038 13.6 0.0 1.3 1 0 0 1 1 1 0 Adenylylsulphate kinase CPT PF07931.7 gi|345006650|ref|YP_004809503.1| - 0.029 13.9 0.5 5.6 6.5 0.0 2.2 2 0 0 2 2 2 0 Chloramphenicol phosphotransferase-like protein AAA_25 PF13481.1 gi|345006650|ref|YP_004809503.1| - 0.031 13.6 0.3 0.041 13.2 0.2 1.4 1 1 0 1 1 1 0 AAA domain CoaE PF01121.15 gi|345006650|ref|YP_004809503.1| - 0.034 13.5 0.2 0.24 10.7 0.0 2.0 2 0 0 2 2 2 0 Dephospho-CoA kinase Thymidylate_kin PF02223.12 gi|345006650|ref|YP_004809503.1| - 0.043 13.1 0.2 6.5 6.0 0.1 2.1 2 0 0 2 2 2 0 Thymidylate kinase dNK PF01712.14 gi|345006650|ref|YP_004809503.1| - 0.046 13.6 0.0 0.06 13.2 0.0 1.2 1 0 0 1 1 1 0 Deoxynucleoside kinase KTI12 PF08433.5 gi|345006650|ref|YP_004809503.1| - 0.054 12.7 0.0 0.11 11.6 0.0 1.5 2 0 0 2 2 2 0 Chromatin associated protein KTI12 DUF815 PF05673.8 gi|345006650|ref|YP_004809503.1| - 0.082 11.8 0.0 0.12 11.2 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF815) MobB PF03205.9 gi|345006650|ref|YP_004809503.1| - 0.086 12.5 0.0 0.17 11.5 0.0 1.6 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B TIP49 PF06068.8 gi|345006650|ref|YP_004809503.1| - 0.12 11.1 0.1 0.27 9.9 0.1 1.5 2 0 0 2 2 2 0 TIP49 C-terminus PRK PF00485.13 gi|345006650|ref|YP_004809503.1| - 0.13 11.8 0.1 0.5 9.9 0.0 1.8 2 0 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family AAA_10 PF12846.2 gi|345006650|ref|YP_004809503.1| - 0.27 10.6 0.9 0.81 9.0 0.1 1.9 1 1 0 2 2 2 0 AAA-like domain Aminotran_1_2 PF00155.16 gi|345006651|ref|YP_004809504.1| - 1.1e-66 225.2 0.0 1.3e-66 225.0 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Alliinase_C PF04864.8 gi|345006651|ref|YP_004809504.1| - 0.00034 19.3 0.0 0.00046 18.9 0.0 1.2 1 0 0 1 1 1 1 Allinase AAA_10 PF12846.2 gi|345006651|ref|YP_004809504.1| - 0.15 11.4 0.1 1.4 8.2 0.0 2.0 1 1 0 2 2 2 0 AAA-like domain SAPS PF04499.10 gi|345006652|ref|YP_004809505.1| - 0.27 9.8 4.8 0.33 9.5 3.3 1.2 1 0 0 1 1 1 0 SIT4 phosphatase-associated protein CENP-T PF15511.1 gi|345006652|ref|YP_004809505.1| - 4.4 6.4 26.0 5.5 6.1 18.0 1.1 1 0 0 1 1 1 0 Centromere kinetochore component CENP-T MMR_HSR1 PF01926.18 gi|345006653|ref|YP_004809506.1| - 2.4e-17 62.9 0.0 6.8e-17 61.4 0.0 1.8 2 0 0 2 2 2 1 50S ribosome-binding GTPase GTP_EFTU PF00009.22 gi|345006653|ref|YP_004809506.1| - 6.1e-11 42.1 0.2 1.7e-09 37.3 0.0 2.4 2 1 0 2 2 2 1 Elongation factor Tu GTP binding domain GTP-bdg_N PF13167.1 gi|345006653|ref|YP_004809506.1| - 5.3e-09 36.0 0.0 1.3e-08 34.8 0.0 1.6 1 0 0 1 1 1 1 GTP-binding GTPase N-terminal FeoB_N PF02421.13 gi|345006653|ref|YP_004809506.1| - 7.3e-05 22.0 0.3 0.089 12.0 0.0 3.1 3 0 0 3 3 3 2 Ferrous iron transport protein B cobW PF02492.14 gi|345006653|ref|YP_004809506.1| - 0.0039 16.6 0.3 0.5 9.7 0.0 2.8 3 1 0 3 3 3 1 CobW/HypB/UreG, nucleotide-binding domain PduV-EutP PF10662.4 gi|345006653|ref|YP_004809506.1| - 0.0059 16.0 0.0 0.15 11.5 0.0 2.3 2 0 0 2 2 2 1 Ethanolamine utilisation - propanediol utilisation Snapin_Pallidin PF14712.1 gi|345006653|ref|YP_004809506.1| - 0.0093 16.2 0.3 0.022 15.0 0.2 1.5 1 0 0 1 1 1 1 Snapin/Pallidin MobB PF03205.9 gi|345006653|ref|YP_004809506.1| - 0.017 14.8 0.0 0.051 13.2 0.0 1.8 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_22 PF13401.1 gi|345006653|ref|YP_004809506.1| - 0.022 14.8 0.0 0.054 13.6 0.0 1.7 1 0 0 1 1 1 0 AAA domain Arf PF00025.16 gi|345006653|ref|YP_004809506.1| - 0.025 13.8 0.0 0.66 9.1 0.0 2.3 2 0 0 2 2 2 0 ADP-ribosylation factor family Dynamin_N PF00350.18 gi|345006653|ref|YP_004809506.1| - 0.026 14.3 0.0 9 6.0 0.0 2.5 2 1 0 3 3 3 0 Dynamin family AAA_18 PF13238.1 gi|345006653|ref|YP_004809506.1| - 0.059 13.6 0.0 0.15 12.3 0.0 1.7 1 0 0 1 1 1 0 AAA domain Miro PF08477.8 gi|345006653|ref|YP_004809506.1| - 0.068 13.6 0.0 0.23 11.9 0.0 2.0 1 1 0 1 1 1 0 Miro-like protein AAA_17 PF13207.1 gi|345006653|ref|YP_004809506.1| - 0.082 13.7 0.9 0.33 11.7 0.0 2.7 2 2 0 2 2 2 0 AAA domain AAA_16 PF13191.1 gi|345006653|ref|YP_004809506.1| - 0.098 12.6 5.3 0.089 12.7 2.1 2.2 1 1 1 2 2 2 0 AAA ATPase domain FKBP_C PF00254.23 gi|345006654|ref|YP_004809507.1| - 5.3e-12 45.6 0.6 1.7e-11 44.0 0.4 1.9 1 1 0 1 1 1 1 FKBP-type peptidyl-prolyl cis-trans isomerase UreE_C PF05194.7 gi|345006654|ref|YP_004809507.1| - 0.11 12.5 0.0 0.28 11.3 0.0 1.7 1 0 0 1 1 1 0 UreE urease accessory protein, C-terminal domain Flocculin PF00624.13 gi|345006654|ref|YP_004809507.1| - 3.6 7.4 5.9 7.5 6.4 4.1 1.5 1 0 0 1 1 1 0 Flocculin repeat AdoMet_Synthase PF01941.14 gi|345006656|ref|YP_004809509.1| - 3.7e-171 569.0 9.4 4.2e-171 568.8 6.5 1.0 1 0 0 1 1 1 1 S-adenosylmethionine synthetase (AdoMet synthetase) DUF21 PF01595.15 gi|345006657|ref|YP_004809510.1| - 4.9e-30 104.1 1.5 6.7e-30 103.7 1.0 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF21 CBS PF00571.23 gi|345006657|ref|YP_004809510.1| - 4.2e-13 48.8 0.1 1.9e-08 33.9 0.0 2.3 2 0 0 2 2 2 2 CBS domain Sigma70_r3 PF04539.11 gi|345006657|ref|YP_004809510.1| - 0.013 15.4 0.7 0.028 14.2 0.1 1.8 2 0 0 2 2 2 0 Sigma-70 region 3 ThiI PF02568.9 gi|345006658|ref|YP_004809511.1| - 1.1e-39 135.9 0.0 1.6e-39 135.4 0.0 1.1 1 0 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) THUMP PF02926.12 gi|345006658|ref|YP_004809511.1| - 6.9e-20 71.3 0.0 4.7e-19 68.7 0.0 2.1 2 0 0 2 2 2 1 THUMP domain QueC PF06508.8 gi|345006658|ref|YP_004809511.1| - 0.00049 19.4 0.0 0.011 14.9 0.0 2.3 1 1 0 1 1 1 1 Queuosine biosynthesis protein QueC tRNA_Me_trans PF03054.11 gi|345006658|ref|YP_004809511.1| - 0.01 14.4 0.0 0.016 13.7 0.0 1.2 1 0 0 1 1 1 0 tRNA methyl transferase Asn_synthase PF00733.16 gi|345006658|ref|YP_004809511.1| - 0.041 13.3 0.2 0.11 12.0 0.0 1.7 2 0 0 2 2 2 0 Asparagine synthase Arginosuc_synth PF00764.14 gi|345006658|ref|YP_004809511.1| - 0.043 12.8 0.0 0.063 12.3 0.0 1.3 1 0 0 1 1 1 0 Arginosuccinate synthase PALP PF00291.20 gi|345006660|ref|YP_004809513.1| - 3.5e-57 193.9 0.8 4.4e-57 193.6 0.6 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Thioredoxin_9 PF14595.1 gi|345006661|ref|YP_004809514.1| - 6.9e-05 22.4 0.0 8.3e-05 22.1 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin Thioredoxin PF00085.15 gi|345006661|ref|YP_004809514.1| - 7.1e-05 22.4 0.0 9.1e-05 22.0 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin AhpC-TSA PF00578.16 gi|345006661|ref|YP_004809514.1| - 0.0018 17.9 0.0 0.0022 17.6 0.0 1.2 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.5 gi|345006661|ref|YP_004809514.1| - 0.0075 15.8 0.0 0.02 14.4 0.0 1.6 1 1 1 2 2 2 1 Redoxin Thioredoxin_2 PF13098.1 gi|345006661|ref|YP_004809514.1| - 0.017 15.3 0.1 0.048 13.8 0.0 1.7 1 1 0 1 1 1 0 Thioredoxin-like domain Thioredoxin_7 PF13899.1 gi|345006661|ref|YP_004809514.1| - 0.045 13.7 0.0 0.066 13.2 0.0 1.3 1 0 0 1 1 1 0 Thioredoxin-like Thioredox_DsbH PF03190.10 gi|345006662|ref|YP_004809515.1| - 2.2e-69 232.3 0.1 3.3e-69 231.7 0.1 1.2 1 0 0 1 1 1 1 Protein of unknown function, DUF255 Thioredoxin_7 PF13899.1 gi|345006662|ref|YP_004809515.1| - 1.2e-13 50.8 0.1 2.5e-13 49.8 0.1 1.5 1 0 0 1 1 1 1 Thioredoxin-like Thioredoxin_2 PF13098.1 gi|345006662|ref|YP_004809515.1| - 0.0052 16.9 0.0 0.012 15.8 0.0 1.6 1 0 0 1 1 1 1 Thioredoxin-like domain Usp PF00582.21 gi|345006663|ref|YP_004809516.1| - 5.3e-20 72.0 0.3 7.5e-20 71.5 0.2 1.2 1 0 0 1 1 1 1 Universal stress protein family T2SL PF05134.8 gi|345006663|ref|YP_004809516.1| - 0.024 13.8 0.2 0.03 13.4 0.1 1.1 1 0 0 1 1 1 0 Type II secretion system (T2SS), protein L GARS_A PF01071.14 gi|345006664|ref|YP_004809517.1| - 2.4e-46 157.7 0.2 4.8e-45 153.5 0.1 2.4 1 1 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain GARS_N PF02844.10 gi|345006664|ref|YP_004809517.1| - 1.1e-24 86.7 0.7 2.3e-24 85.7 0.5 1.5 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, N domain ATP-grasp_4 PF13535.1 gi|345006664|ref|YP_004809517.1| - 3.3e-17 62.8 1.4 1.6e-13 50.7 0.1 3.3 3 1 0 3 3 3 1 ATP-grasp domain GARS_C PF02843.11 gi|345006664|ref|YP_004809517.1| - 1.5e-16 60.2 2.2 2.1e-16 59.8 0.4 2.2 2 0 0 2 2 2 1 Phosphoribosylglycinamide synthetase, C domain ATPgrasp_Ter PF15632.1 gi|345006664|ref|YP_004809517.1| - 8.1e-09 34.6 0.1 2.2e-08 33.2 0.0 1.6 1 1 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon ATP-grasp_3 PF02655.9 gi|345006664|ref|YP_004809517.1| - 2.6e-05 24.1 0.0 0.00013 21.9 0.0 1.9 1 1 0 1 1 1 1 ATP-grasp domain CPSase_L_D2 PF02786.12 gi|345006664|ref|YP_004809517.1| - 0.00078 18.7 0.0 0.0017 17.6 0.0 1.5 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain PRA-PH PF01503.12 gi|345006664|ref|YP_004809517.1| - 0.096 12.9 1.4 2.2 8.6 0.2 2.7 2 1 0 2 2 2 0 Phosphoribosyl-ATP pyrophosphohydrolase GFO_IDH_MocA PF01408.17 gi|345006664|ref|YP_004809517.1| - 0.2 12.1 1.1 0.33 11.4 0.1 1.8 2 0 0 2 2 2 0 Oxidoreductase family, NAD-binding Rossmann fold PhnA_Zn_Ribbon PF08274.7 gi|345006665|ref|YP_004809518.1| - 0.0008 19.1 4.1 0.033 13.9 0.4 2.1 2 0 0 2 2 2 1 PhnA Zinc-Ribbon zinc_ribbon_5 PF13719.1 gi|345006665|ref|YP_004809518.1| - 0.001 18.5 1.7 0.0034 16.9 1.2 1.8 1 1 0 1 1 1 1 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|345006665|ref|YP_004809518.1| - 0.0016 18.1 1.9 0.0054 16.3 1.6 1.7 1 1 1 2 2 2 2 zinc-ribbon domain Zn_Tnp_IS1 PF03811.8 gi|345006665|ref|YP_004809518.1| - 0.0081 15.6 0.4 2.4 7.7 0.1 2.1 2 0 0 2 2 2 1 InsA N-terminal domain HypA PF01155.14 gi|345006665|ref|YP_004809518.1| - 0.0088 15.7 0.2 0.0093 15.6 0.1 1.1 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family UPF0547 PF10571.4 gi|345006665|ref|YP_004809518.1| - 0.016 14.9 2.7 0.27 10.9 0.1 2.1 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zf-CHY PF05495.7 gi|345006665|ref|YP_004809518.1| - 0.03 14.4 0.2 0.034 14.3 0.1 1.2 1 0 0 1 1 1 0 CHY zinc finger NMD3 PF04981.8 gi|345006665|ref|YP_004809518.1| - 0.032 13.3 0.2 0.035 13.2 0.1 1.0 1 0 0 1 1 1 0 NMD3 family Glutaredoxin PF00462.19 gi|345006665|ref|YP_004809518.1| - 0.037 14.0 0.2 0.38 10.7 0.0 2.0 2 0 0 2 2 2 0 Glutaredoxin Stc1 PF12898.2 gi|345006665|ref|YP_004809518.1| - 0.038 14.0 0.8 0.053 13.5 0.5 1.3 1 1 0 1 1 1 0 Stc1 domain TF_Zn_Ribbon PF08271.7 gi|345006665|ref|YP_004809518.1| - 0.048 12.9 0.8 2.3 7.5 0.0 2.2 2 0 0 2 2 2 0 TFIIB zinc-binding Ribosomal_S27e PF01667.12 gi|345006665|ref|YP_004809518.1| - 0.057 12.9 0.5 1.8 8.1 0.1 2.1 2 0 0 2 2 2 0 Ribosomal protein S27 HNH PF01844.18 gi|345006665|ref|YP_004809518.1| - 0.059 13.2 1.6 3.7 7.4 0.1 2.2 2 0 0 2 2 2 0 HNH endonuclease DZR PF12773.2 gi|345006665|ref|YP_004809518.1| - 0.075 12.8 2.5 0.16 11.8 1.8 1.5 1 1 0 1 1 1 0 Double zinc ribbon zf-3CxxC PF13695.1 gi|345006665|ref|YP_004809518.1| - 0.12 12.6 0.6 0.2 11.8 0.4 1.6 1 1 0 1 1 1 0 Zinc-binding domain TFIIS_C PF01096.13 gi|345006665|ref|YP_004809518.1| - 0.12 12.0 0.8 5.6 6.6 0.1 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) Zn-ribbon_8 PF09723.5 gi|345006665|ref|YP_004809518.1| - 0.17 11.8 4.6 2 8.4 3.2 2.1 1 1 0 1 1 1 0 Zinc ribbon domain zinc_ribbon_6 PF14599.1 gi|345006665|ref|YP_004809518.1| - 0.19 11.5 0.7 3.7 7.4 0.1 2.1 1 1 1 2 2 2 0 Zinc-ribbon Opy2 PF09463.5 gi|345006665|ref|YP_004809518.1| - 0.24 11.5 1.7 12 6.0 0.1 2.1 2 0 0 2 2 2 0 Opy2 protein zinc-ribbons_6 PF07191.7 gi|345006665|ref|YP_004809518.1| - 0.24 11.1 3.6 3 7.7 2.6 2.0 1 1 2 3 3 3 0 zinc-ribbons CpXC PF14353.1 gi|345006665|ref|YP_004809518.1| - 0.33 10.8 1.7 14 5.6 1.2 2.1 1 1 1 2 2 2 0 CpXC protein zf-RING_3 PF14369.1 gi|345006665|ref|YP_004809518.1| - 0.5 10.4 6.5 9.4 6.3 0.3 2.2 1 1 1 2 2 2 0 zinc-finger DUF329 PF03884.9 gi|345006665|ref|YP_004809518.1| - 1.3 8.6 5.0 3.1 7.4 0.5 2.1 1 1 0 2 2 2 0 Domain of unknown function (DUF329) Rubredoxin PF00301.15 gi|345006665|ref|YP_004809518.1| - 1.4 8.8 5.6 57 3.7 4.0 2.2 1 1 1 2 2 2 0 Rubredoxin zf-HYPF PF07503.7 gi|345006665|ref|YP_004809518.1| - 1.6 8.2 6.0 5.2 6.5 4.2 1.8 1 1 0 1 1 1 0 HypF finger DNA_ligase_ZBD PF03119.11 gi|345006665|ref|YP_004809518.1| - 4.7 7.0 6.4 7 6.4 0.3 2.3 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain Myco_19_kDa PF05481.7 gi|345006666|ref|YP_004809519.1| - 0.013 15.3 1.1 0.013 15.3 0.8 1.4 2 0 0 2 2 2 0 Mycobacterium 19 kDa lipoprotein antigen ECH PF00378.15 gi|345006667|ref|YP_004809520.1| - 9.3e-67 224.7 0.1 1.2e-66 224.3 0.1 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase family ECH_C PF13766.1 gi|345006667|ref|YP_004809520.1| - 0.00022 21.3 0.1 0.00068 19.7 0.0 1.9 2 1 0 2 2 2 1 2-enoyl-CoA Hydratase C-terminal region 3HCDH_N PF02737.13 gi|345006668|ref|YP_004809521.1| - 9.6e-61 204.5 2.7 1.5e-60 203.9 1.8 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 3HCDH PF00725.17 gi|345006668|ref|YP_004809521.1| - 2.5e-28 98.2 0.0 7.1e-28 96.8 0.0 1.8 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NAD_Gly3P_dh_N PF01210.18 gi|345006668|ref|YP_004809521.1| - 5.3e-07 29.4 0.3 1.3e-06 28.2 0.1 1.6 1 1 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NAD_binding_2 PF03446.10 gi|345006668|ref|YP_004809521.1| - 4.3e-06 26.6 1.5 4.3e-06 26.6 1.0 2.3 2 1 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase UDPG_MGDP_dh_N PF03721.9 gi|345006668|ref|YP_004809521.1| - 0.02 14.2 0.1 0.042 13.2 0.1 1.6 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain F420_oxidored PF03807.12 gi|345006668|ref|YP_004809521.1| - 0.023 15.1 4.1 0.023 15.1 2.8 2.7 2 1 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent Rossmann-like PF10727.4 gi|345006668|ref|YP_004809521.1| - 0.086 12.5 0.5 0.21 11.3 0.3 1.6 1 0 0 1 1 1 0 Rossmann-like domain Pyr_redox_2 PF07992.9 gi|345006668|ref|YP_004809521.1| - 0.14 12.0 0.2 0.17 11.7 0.2 1.3 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase AlaDh_PNT_C PF01262.16 gi|345006668|ref|YP_004809521.1| - 0.15 11.6 0.8 0.29 10.6 0.1 1.8 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain DUF35_N PF12172.3 gi|345006669|ref|YP_004809522.1| - 3.7e-08 33.0 4.2 1.3e-07 31.2 2.9 2.0 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) ACP_syn_III_C PF08541.5 gi|345006669|ref|YP_004809522.1| - 0.0031 17.4 0.2 0.0069 16.3 0.2 1.6 1 0 0 1 1 1 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal DUF35 PF01796.12 gi|345006669|ref|YP_004809522.1| - 0.0071 16.5 1.7 0.015 15.5 1.2 1.6 1 0 0 1 1 1 1 DUF35 OB-fold domain Thiolase_N PF00108.18 gi|345006670|ref|YP_004809523.1| - 1.1e-09 37.6 0.1 2.8e-08 33.0 0.0 2.3 2 0 0 2 2 2 1 Thiolase, N-terminal domain Thiolase_C PF02803.13 gi|345006670|ref|YP_004809523.1| - 2.7e-08 33.2 0.2 9.9e-08 31.4 0.1 1.9 1 1 0 1 1 1 1 Thiolase, C-terminal domain ketoacyl-synt PF00109.21 gi|345006670|ref|YP_004809523.1| - 7.5e-08 32.1 2.4 2.4e-07 30.5 1.7 1.8 1 0 0 1 1 1 1 Beta-ketoacyl synthase, N-terminal domain ACP_syn_III PF08545.5 gi|345006670|ref|YP_004809523.1| - 0.01 15.4 5.5 0.06 13.0 0.1 2.9 3 0 0 3 3 3 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CSD PF00313.17 gi|345006671|ref|YP_004809524.1| - 8.2e-20 70.3 0.3 9e-20 70.2 0.2 1.0 1 0 0 1 1 1 1 'Cold-shock' DNA-binding domain S1-like PF14444.1 gi|345006671|ref|YP_004809524.1| - 0.001 18.7 0.9 0.0015 18.2 0.6 1.4 1 1 0 1 1 1 1 S1-like OB_RNB PF08206.6 gi|345006671|ref|YP_004809524.1| - 0.064 12.7 1.8 0.095 12.2 1.3 1.4 1 0 0 1 1 1 0 Ribonuclease B OB domain CusF_Ec PF11604.3 gi|345006671|ref|YP_004809524.1| - 0.079 12.8 0.1 0.11 12.3 0.0 1.4 1 1 0 1 1 1 0 Copper binding periplasmic protein CusF Vir_act_alpha_C PF10400.4 gi|345006672|ref|YP_004809525.1| - 0.41 11.0 3.4 0.21 11.9 0.9 1.6 2 0 0 2 2 2 0 Virulence activator alpha C-term HypA PF01155.14 gi|345006673|ref|YP_004809526.1| - 0.0002 21.0 0.4 0.0002 21.0 0.3 1.0 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family OrfB_Zn_ribbon PF07282.6 gi|345006673|ref|YP_004809526.1| - 0.00024 20.6 0.9 0.00029 20.4 0.6 1.1 1 0 0 1 1 1 1 Putative transposase DNA-binding domain DUF1272 PF06906.6 gi|345006673|ref|YP_004809526.1| - 0.00037 20.2 0.7 0.00046 19.9 0.5 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1272) Zn-ribbon_8 PF09723.5 gi|345006673|ref|YP_004809526.1| - 0.00069 19.5 2.6 0.0022 17.9 1.8 1.7 1 1 0 1 1 1 1 Zinc ribbon domain zf-IS66 PF13005.2 gi|345006673|ref|YP_004809526.1| - 0.0011 18.8 1.2 0.11 12.5 0.1 2.1 2 0 0 2 2 2 1 zinc-finger binding domain of transposase IS66 Nudix_N_2 PF14803.1 gi|345006673|ref|YP_004809526.1| - 0.0029 17.2 2.9 0.1 12.3 2.0 2.1 1 1 0 1 1 1 1 Nudix N-terminal DUF2688 PF10892.3 gi|345006673|ref|YP_004809526.1| - 0.0051 16.4 2.7 0.009 15.6 1.9 1.6 1 1 0 1 1 1 1 Protein of unknown function (DUF2688) zinc-ribbons_6 PF07191.7 gi|345006673|ref|YP_004809526.1| - 0.0059 16.3 0.1 0.0073 16.0 0.1 1.2 1 0 0 1 1 1 1 zinc-ribbons DZR PF12773.2 gi|345006673|ref|YP_004809526.1| - 0.006 16.3 1.5 0.012 15.3 1.1 1.4 1 1 0 1 1 1 1 Double zinc ribbon DUF2039 PF10217.4 gi|345006673|ref|YP_004809526.1| - 0.0083 16.1 0.1 0.0093 15.9 0.1 1.1 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2039) zf-ribbon_3 PF13248.1 gi|345006673|ref|YP_004809526.1| - 0.0088 15.2 2.0 0.034 13.3 1.5 1.7 1 1 1 2 2 2 2 zinc-ribbon domain Prok-RING_1 PF14446.1 gi|345006673|ref|YP_004809526.1| - 0.01 15.5 0.3 0.012 15.3 0.2 1.1 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 zf-RING_3 PF14369.1 gi|345006673|ref|YP_004809526.1| - 0.014 15.3 1.4 0.019 14.9 0.9 1.3 1 0 0 1 1 1 0 zinc-finger zinc_ribbon_2 PF13240.1 gi|345006673|ref|YP_004809526.1| - 0.014 14.8 0.7 1.9 8.0 0.1 2.1 2 0 0 2 2 2 0 zinc-ribbon domain RNHCP PF12647.2 gi|345006673|ref|YP_004809526.1| - 0.022 14.5 0.2 0.024 14.4 0.1 1.2 1 0 0 1 1 1 0 RNHCP domain zf-dskA_traR PF01258.12 gi|345006673|ref|YP_004809526.1| - 0.024 14.3 1.1 2.2 8.1 0.1 2.2 2 0 0 2 2 2 0 Prokaryotic dksA/traR C4-type zinc finger Zn_Tnp_IS1595 PF12760.2 gi|345006673|ref|YP_004809526.1| - 0.025 14.3 4.0 0.61 9.9 0.1 2.1 1 1 1 2 2 2 0 Transposase zinc-ribbon domain zf-C2H2 PF00096.21 gi|345006673|ref|YP_004809526.1| - 0.05 13.9 2.5 3.3 8.2 0.2 2.1 2 0 0 2 2 2 0 Zinc finger, C2H2 type DUF2757 PF10955.3 gi|345006673|ref|YP_004809526.1| - 0.067 13.3 1.1 0.26 11.4 0.9 1.7 1 1 1 2 2 2 0 Protein of unknown function (DUF2757) UPF0547 PF10571.4 gi|345006673|ref|YP_004809526.1| - 0.076 12.7 1.3 2.2 8.0 0.2 2.1 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Ribosomal_L37e PF01907.14 gi|345006673|ref|YP_004809526.1| - 0.1 12.4 1.2 0.13 12.0 0.8 1.2 1 0 0 1 1 1 0 Ribosomal protein L37e zf-FPG_IleRS PF06827.9 gi|345006673|ref|YP_004809526.1| - 0.14 11.7 3.1 5.2 6.8 3.0 2.0 1 1 1 2 2 2 0 Zinc finger found in FPG and IleRS zf-C2H2_4 PF13894.1 gi|345006673|ref|YP_004809526.1| - 0.15 12.4 1.2 2.5 8.6 0.1 2.1 2 0 0 2 2 2 0 C2H2-type zinc finger DNA_RNApol_7kD PF03604.8 gi|345006673|ref|YP_004809526.1| - 0.15 11.5 2.2 0.35 10.3 1.5 1.6 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit YhfH PF14149.1 gi|345006673|ref|YP_004809526.1| - 0.19 11.5 1.7 3.3 7.5 0.9 2.0 1 1 1 2 2 2 0 YhfH-like protein C1_3 PF07649.7 gi|345006673|ref|YP_004809526.1| - 0.21 11.6 1.5 0.28 11.2 1.0 1.2 1 0 0 1 1 1 0 C1-like domain zf-HYPF PF07503.7 gi|345006673|ref|YP_004809526.1| - 0.24 10.8 3.0 8 5.9 0.2 2.3 2 0 0 2 2 2 0 HypF finger DUF35_N PF12172.3 gi|345006673|ref|YP_004809526.1| - 0.33 10.9 5.5 1.2 9.1 3.8 1.8 1 1 0 1 1 1 0 Rubredoxin-like zinc ribbon domain (DUF35_N) ADK_lid PF05191.9 gi|345006673|ref|YP_004809526.1| - 0.47 10.1 3.7 1.5 8.5 0.3 2.1 2 0 0 2 2 2 0 Adenylate kinase, active site lid TF_Zn_Ribbon PF08271.7 gi|345006673|ref|YP_004809526.1| - 0.53 9.6 4.4 2.4 7.5 3.0 1.9 1 1 0 1 1 1 0 TFIIB zinc-binding Sgf11 PF08209.6 gi|345006673|ref|YP_004809526.1| - 0.7 9.2 5.1 2 7.7 0.3 2.1 1 1 1 2 2 2 0 Sgf11 (transcriptional regulation protein) zf-ISL3 PF14690.1 gi|345006673|ref|YP_004809526.1| - 2.1 8.4 5.3 10 6.2 0.3 2.1 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-Mss51 PF13824.1 gi|345006673|ref|YP_004809526.1| - 2.2 8.2 4.1 18 5.2 0.4 2.1 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 MaoC_dehydratas PF01575.14 gi|345006674|ref|YP_004809527.1| - 2.3e-13 49.5 0.1 2.8e-13 49.3 0.0 1.1 1 0 0 1 1 1 1 MaoC like domain MaoC_dehydrat_N PF13452.1 gi|345006674|ref|YP_004809527.1| - 8e-05 22.4 0.7 0.00025 20.8 0.5 1.7 1 1 0 1 1 1 1 N-terminal half of MaoC dehydratase DUF4013 PF13197.1 gi|345006675|ref|YP_004809528.1| - 1.4 8.2 52.9 0.022 14.1 20.8 2.8 1 1 2 3 3 3 0 Protein of unknown function (DUF4013) DoxX PF07681.7 gi|345006676|ref|YP_004809529.1| - 9.3e-10 38.8 10.9 9.3e-10 38.8 7.5 2.2 1 1 1 2 2 2 1 DoxX DoxD PF04173.8 gi|345006676|ref|YP_004809529.1| - 0.0016 18.1 4.3 0.0027 17.3 3.0 1.4 1 1 0 1 1 1 1 TQO small subunit DoxD HTH_10 PF04967.7 gi|345006677|ref|YP_004809530.1| - 7.8e-17 60.6 0.1 1.3e-16 59.8 0.1 1.4 1 0 0 1 1 1 1 HTH DNA binding domain HTH_AsnC-type PF13404.1 gi|345006677|ref|YP_004809530.1| - 0.0075 15.7 0.4 0.028 13.9 0.3 2.0 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.1 gi|345006677|ref|YP_004809530.1| - 0.018 14.4 0.0 0.048 13.0 0.0 1.7 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding DUF799 PF05643.6 gi|345006677|ref|YP_004809530.1| - 0.095 12.0 0.0 0.14 11.4 0.0 1.2 1 0 0 1 1 1 0 Putative bacterial lipoprotein (DUF799) DUF302 PF03625.9 gi|345006679|ref|YP_004809532.1| - 3.8e-17 61.6 0.0 5.6e-17 61.0 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function DUF302 5_nucleotid_C PF02872.13 gi|345006681|ref|YP_004809534.1| - 2e-17 63.6 0.0 3.5e-17 62.8 0.0 1.3 1 0 0 1 1 1 1 5'-nucleotidase, C-terminal domain Metallophos PF00149.23 gi|345006681|ref|YP_004809534.1| - 0.032 13.6 4.5 0.035 13.4 1.0 2.3 3 0 0 3 3 3 0 Calcineurin-like phosphoesterase Metallophos_2 PF12850.2 gi|345006681|ref|YP_004809534.1| - 0.044 13.6 6.3 0.22 11.3 4.4 2.0 1 1 0 1 1 1 0 Calcineurin-like phosphoesterase superfamily domain Lactamase_B PF00753.22 gi|345006682|ref|YP_004809535.1| - 8e-20 71.3 5.8 1.4e-19 70.5 4.0 1.4 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Rhodanese PF00581.15 gi|345006682|ref|YP_004809535.1| - 1.4e-14 54.3 0.0 5e-14 52.5 0.0 1.9 2 0 0 2 2 2 1 Rhodanese-like domain Lactamase_B_2 PF12706.2 gi|345006682|ref|YP_004809535.1| - 0.0018 17.8 0.2 0.0039 16.7 0.2 1.5 1 1 0 1 1 1 1 Beta-lactamase superfamily domain DUF3039 PF11238.3 gi|345006682|ref|YP_004809535.1| - 0.13 11.7 0.0 0.25 10.8 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3039) RHH_3 PF12651.2 gi|345006683|ref|YP_004809536.1| - 0.022 14.4 0.1 0.051 13.3 0.1 1.7 1 0 0 1 1 1 0 Ribbon-helix-helix domain HyaE PF07449.6 gi|345006684|ref|YP_004809537.1| - 0.041 13.7 0.1 0.074 12.9 0.1 1.3 1 0 0 1 1 1 0 Hydrogenase-1 expression protein HyaE MFS_1 PF07690.11 gi|345006685|ref|YP_004809538.1| - 2.4e-19 69.2 100.2 5e-16 58.3 40.7 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily DUF4407 PF14362.1 gi|345006685|ref|YP_004809538.1| - 0.49 9.2 3.5 1.7 7.5 2.4 1.9 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) PaaA_PaaC PF05138.7 gi|345006686|ref|YP_004809539.1| - 2.1e-69 233.4 0.2 2.7e-69 233.0 0.1 1.1 1 0 0 1 1 1 1 Phenylacetic acid catabolic protein PaaB PF06243.6 gi|345006687|ref|YP_004809540.1| - 1.6e-27 95.4 1.2 2e-27 95.1 0.8 1.2 1 1 0 1 1 1 1 Phenylacetic acid degradation B PaaA_PaaC PF05138.7 gi|345006688|ref|YP_004809541.1| - 2.7e-63 213.3 2.9 3.2e-63 213.1 2.0 1.0 1 0 0 1 1 1 1 Phenylacetic acid catabolic protein MiaE_2 PF13794.1 gi|345006688|ref|YP_004809541.1| - 0.0015 18.0 0.4 0.0022 17.5 0.3 1.4 1 0 0 1 1 1 1 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE)-like HTH_AsnC-type PF13404.1 gi|345006688|ref|YP_004809541.1| - 0.061 12.8 0.1 1.8 8.1 0.0 2.5 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain Rubrerythrin PF02915.12 gi|345006688|ref|YP_004809541.1| - 0.16 12.2 1.5 20 5.5 0.1 2.8 2 1 1 3 3 3 0 Rubrerythrin DUF59 PF01883.14 gi|345006689|ref|YP_004809542.1| - 2.6e-14 52.9 0.1 3.7e-14 52.4 0.1 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF59 Zn-ribbon_8 PF09723.5 gi|345006690|ref|YP_004809543.1| - 0.0027 17.6 4.2 0.049 13.5 0.2 2.2 2 0 0 2 2 2 1 Zinc ribbon domain zf-CHCC PF10276.4 gi|345006690|ref|YP_004809543.1| - 0.039 13.7 0.8 0.039 13.7 0.6 2.4 2 1 0 2 2 2 0 Zinc-finger domain TF_Zn_Ribbon PF08271.7 gi|345006690|ref|YP_004809543.1| - 0.047 13.0 1.1 0.047 13.0 0.8 1.9 1 1 1 2 2 2 0 TFIIB zinc-binding zf-ribbon_3 PF13248.1 gi|345006690|ref|YP_004809543.1| - 0.074 12.2 0.7 0.074 12.2 0.5 1.9 1 1 1 2 2 2 0 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|345006690|ref|YP_004809543.1| - 0.081 12.4 0.1 0.081 12.4 0.1 1.8 2 0 0 2 2 2 0 zinc-ribbon domain DZR PF12773.2 gi|345006690|ref|YP_004809543.1| - 0.087 12.6 4.9 0.23 11.2 3.4 1.7 1 1 0 1 1 1 0 Double zinc ribbon zf-BED PF02892.10 gi|345006690|ref|YP_004809543.1| - 0.38 10.5 2.9 1.5 8.6 0.0 2.1 1 1 1 2 2 2 0 BED zinc finger Lar_restr_allev PF14354.1 gi|345006690|ref|YP_004809543.1| - 0.43 10.9 5.4 0.59 10.4 3.6 1.4 1 1 0 1 1 1 0 Restriction alleviation protein Lar FYVE PF01363.16 gi|345006690|ref|YP_004809543.1| - 0.49 10.3 3.2 2.5 8.0 1.9 1.9 1 1 0 1 1 1 0 FYVE zinc finger zf-C2H2_4 PF13894.1 gi|345006690|ref|YP_004809543.1| - 0.61 10.5 5.1 2.7 8.5 0.2 2.4 2 0 0 2 2 2 0 C2H2-type zinc finger zf-H2C2_2 PF13465.1 gi|345006690|ref|YP_004809543.1| - 0.82 10.0 3.7 7.1 7.1 0.1 2.3 2 0 0 2 2 2 0 Zinc-finger double domain zf-RING_3 PF14369.1 gi|345006690|ref|YP_004809543.1| - 0.92 9.5 6.6 0.43 10.6 0.4 2.2 2 0 0 2 2 2 0 zinc-finger Zn_Tnp_IS1595 PF12760.2 gi|345006690|ref|YP_004809543.1| - 5.4 6.9 6.5 7.8 6.3 4.5 1.3 1 1 0 1 1 1 0 Transposase zinc-ribbon domain zf-ISL3 PF14690.1 gi|345006690|ref|YP_004809543.1| - 5.9 7.0 6.3 2.1 8.4 2.3 1.8 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 DUF2298 PF10060.4 gi|345006694|ref|YP_004809547.1| - 5.6e-120 401.3 20.4 5.6e-120 401.3 14.2 1.4 2 0 0 2 2 2 1 Uncharacterized membrane protein (DUF2298) ABC_tran PF00005.22 gi|345006695|ref|YP_004809548.1| - 4.4e-16 59.4 0.0 1.1e-15 58.1 0.0 1.6 1 1 0 1 1 1 1 ABC transporter SMC_N PF02463.14 gi|345006695|ref|YP_004809548.1| - 4e-06 26.2 0.7 0.016 14.4 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_17 PF13207.1 gi|345006695|ref|YP_004809548.1| - 2.8e-05 24.9 1.8 0.00049 20.9 0.1 2.7 2 2 0 2 2 2 1 AAA domain AAA PF00004.24 gi|345006695|ref|YP_004809548.1| - 5.3e-05 23.4 0.0 0.07 13.3 0.0 2.3 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_21 PF13304.1 gi|345006695|ref|YP_004809548.1| - 6.3e-05 23.0 0.4 0.0027 17.6 0.3 2.2 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|345006695|ref|YP_004809548.1| - 0.0026 17.2 0.2 0.0047 16.4 0.1 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_5 PF07728.9 gi|345006695|ref|YP_004809548.1| - 0.0036 17.0 0.3 1.2 8.8 0.0 2.4 2 0 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA_18 PF13238.1 gi|345006695|ref|YP_004809548.1| - 0.018 15.3 0.1 0.076 13.3 0.0 2.1 2 1 0 2 2 2 0 AAA domain AAA_25 PF13481.1 gi|345006695|ref|YP_004809548.1| - 0.026 13.9 0.0 0.11 11.9 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_22 PF13401.1 gi|345006695|ref|YP_004809548.1| - 0.038 14.1 2.2 1.3 9.1 1.6 2.4 1 1 0 1 1 1 0 AAA domain MutS_V PF00488.16 gi|345006695|ref|YP_004809548.1| - 0.049 13.0 0.0 1.4 8.2 0.0 2.1 2 0 0 2 2 2 0 MutS domain V AAA_33 PF13671.1 gi|345006695|ref|YP_004809548.1| - 0.056 13.3 0.1 0.1 12.5 0.0 1.5 1 1 0 1 1 1 0 AAA domain AAA_28 PF13521.1 gi|345006695|ref|YP_004809548.1| - 0.079 12.9 0.1 0.59 10.0 0.0 2.3 3 0 0 3 3 2 0 AAA domain AAA_23 PF13476.1 gi|345006695|ref|YP_004809548.1| - 0.092 13.0 0.2 0.092 13.0 0.1 2.1 2 1 0 2 2 2 0 AAA domain AAA_10 PF12846.2 gi|345006695|ref|YP_004809548.1| - 0.11 11.9 7.1 1.1 8.5 4.9 2.0 1 1 0 1 1 1 0 AAA-like domain AAA_13 PF13166.1 gi|345006695|ref|YP_004809548.1| - 0.11 10.8 0.0 0.15 10.5 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_14 PF13173.1 gi|345006695|ref|YP_004809548.1| - 0.12 12.2 0.0 0.97 9.3 0.0 2.2 2 0 0 2 2 2 0 AAA domain UPF0051 PF01458.12 gi|345006696|ref|YP_004809549.1| - 3.4e-70 236.0 0.8 5e-70 235.5 0.5 1.2 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) UPF0051 PF01458.12 gi|345006697|ref|YP_004809550.1| - 1.6e-63 214.2 0.4 2.1e-63 213.8 0.3 1.1 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) ABC2_membrane_2 PF12679.2 gi|345006698|ref|YP_004809551.1| - 0.15 10.9 3.7 0.24 10.2 2.6 1.3 1 0 0 1 1 1 0 ABC-2 family transporter protein FtsX PF02687.16 gi|345006698|ref|YP_004809551.1| - 1.5 8.6 6.0 0.29 10.9 1.1 1.9 2 0 0 2 2 2 0 FtsX-like permease family MFS_1 PF07690.11 gi|345006699|ref|YP_004809552.1| - 5.9e-36 123.9 61.2 1.2e-19 70.3 20.3 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Rubrerythrin PF02915.12 gi|345006700|ref|YP_004809553.1| - 6.7e-09 36.1 3.6 9.2e-09 35.7 2.5 1.2 1 0 0 1 1 1 1 Rubrerythrin Ferritin_2 PF13668.1 gi|345006700|ref|YP_004809553.1| - 0.012 15.5 2.2 0.24 11.3 0.2 2.1 2 0 0 2 2 2 0 Ferritin-like domain DUF445 PF04286.7 gi|345006700|ref|YP_004809553.1| - 0.051 13.0 0.3 0.055 13.0 0.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF445) DUF3263 PF11662.3 gi|345006700|ref|YP_004809553.1| - 0.063 12.7 0.2 0.35 10.3 0.0 2.2 3 0 0 3 3 3 0 Protein of unknown function (DUF3263) ScpA_ScpB PF02616.9 gi|345006700|ref|YP_004809553.1| - 0.13 11.7 3.2 0.095 12.2 1.2 1.6 1 1 0 1 1 1 0 ScpA/B protein Ferritin PF00210.19 gi|345006700|ref|YP_004809553.1| - 0.15 11.8 5.8 0.35 10.6 2.9 2.0 1 1 1 2 2 2 0 Ferritin-like domain Fe_dep_repress PF01325.14 gi|345006701|ref|YP_004809554.1| - 2.3e-16 59.4 0.0 4.4e-16 58.5 0.0 1.5 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain Fe_dep_repr_C PF02742.10 gi|345006701|ref|YP_004809554.1| - 3.9e-11 42.4 0.1 6.9e-11 41.6 0.1 1.4 1 0 0 1 1 1 1 Iron dependent repressor, metal binding and dimerisation domain HTH_27 PF13463.1 gi|345006701|ref|YP_004809554.1| - 2.9e-07 30.6 0.0 5.7e-07 29.7 0.0 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR_2 PF12802.2 gi|345006701|ref|YP_004809554.1| - 0.0001 21.8 0.0 0.00017 21.1 0.0 1.4 1 0 0 1 1 1 1 MarR family TrmB PF01978.14 gi|345006701|ref|YP_004809554.1| - 0.0013 18.3 0.0 0.0029 17.2 0.0 1.7 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.2 gi|345006701|ref|YP_004809554.1| - 0.011 15.5 0.0 0.021 14.6 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_Crp_2 PF13545.1 gi|345006701|ref|YP_004809554.1| - 0.013 15.3 0.0 0.045 13.5 0.0 2.0 3 0 0 3 3 3 0 Crp-like helix-turn-helix domain HTH_IclR PF09339.5 gi|345006701|ref|YP_004809554.1| - 0.025 14.1 0.0 0.046 13.3 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_24 PF13412.1 gi|345006701|ref|YP_004809554.1| - 0.032 13.6 0.0 0.059 12.7 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_13 PF11972.3 gi|345006701|ref|YP_004809554.1| - 0.046 13.5 0.0 0.089 12.6 0.0 1.4 1 0 0 1 1 1 0 HTH DNA binding domain MarR PF01047.17 gi|345006701|ref|YP_004809554.1| - 0.074 12.7 0.0 0.14 11.8 0.0 1.4 1 0 0 1 1 1 0 MarR family HNH PF01844.18 gi|345006703|ref|YP_004809556.1| - 1.7e-12 46.9 6.6 2.9e-12 46.2 4.6 1.4 1 0 0 1 1 1 1 HNH endonuclease PHD PF00628.24 gi|345006703|ref|YP_004809556.1| - 0.0019 17.8 0.8 0.25 11.0 0.0 2.4 2 0 0 2 2 2 2 PHD-finger HNH_2 PF13391.1 gi|345006703|ref|YP_004809556.1| - 0.034 13.9 0.4 0.056 13.2 0.3 1.4 1 0 0 1 1 1 0 HNH endonuclease Defensin_big PF14862.1 gi|345006703|ref|YP_004809556.1| - 0.093 12.8 0.8 0.27 11.3 0.0 2.0 2 0 0 2 2 2 0 Big defensin DNA_RNApol_7kD PF03604.8 gi|345006703|ref|YP_004809556.1| - 0.11 11.9 3.0 0.59 9.6 0.3 2.3 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit DUF866 PF05907.8 gi|345006703|ref|YP_004809556.1| - 0.15 11.5 0.2 0.21 11.0 0.2 1.1 1 0 0 1 1 1 0 Eukaryotic protein of unknown function (DUF866) Cytochrome_C7 PF14522.1 gi|345006703|ref|YP_004809556.1| - 0.67 9.6 6.2 6.2 6.5 4.3 2.2 1 1 0 1 1 1 0 Cytochrome c7 RHH_1 PF01402.16 gi|345006705|ref|YP_004809558.1| - 0.0016 18.2 0.1 0.005 16.6 0.0 1.8 1 1 0 2 2 2 1 Ribbon-helix-helix protein, copG family PSK_trans_fac PF07704.6 gi|345006705|ref|YP_004809558.1| - 0.031 14.9 0.4 0.04 14.5 0.3 1.2 1 0 0 1 1 1 0 Rv0623-like transcription factor DUF262 PF03235.9 gi|345006709|ref|YP_004809562.1| - 1.4e-23 84.0 0.4 1.4e-23 84.0 0.3 2.2 2 1 0 2 2 2 1 Protein of unknown function DUF262 DUF1524 PF07510.6 gi|345006709|ref|YP_004809562.1| - 4.3e-08 33.0 0.5 1e-07 31.9 0.3 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF1524) HNH_4 PF13395.1 gi|345006709|ref|YP_004809562.1| - 0.0019 17.8 0.0 0.004 16.7 0.0 1.5 1 0 0 1 1 1 1 HNH endonuclease HTH_10 PF04967.7 gi|345006711|ref|YP_004809564.1| - 2.7e-15 55.6 0.0 4.2e-15 55.0 0.0 1.3 1 0 0 1 1 1 1 HTH DNA binding domain Sigma70_r4 PF04545.11 gi|345006711|ref|YP_004809564.1| - 4.8e-05 22.5 0.5 0.00012 21.3 0.3 1.7 1 0 0 1 1 1 1 Sigma-70, region 4 TOBE PF03459.12 gi|345006712|ref|YP_004809565.1| - 0.12 12.4 0.2 0.18 11.9 0.1 1.4 1 0 0 1 1 1 0 TOBE domain CSD PF00313.17 gi|345006713|ref|YP_004809566.1| - 3.9e-20 71.3 0.7 4.3e-20 71.2 0.5 1.0 1 0 0 1 1 1 1 'Cold-shock' DNA-binding domain S1-like PF14444.1 gi|345006713|ref|YP_004809566.1| - 0.014 15.1 0.4 0.017 14.8 0.3 1.3 1 1 0 1 1 1 0 S1-like OB_RNB PF08206.6 gi|345006713|ref|YP_004809566.1| - 0.038 13.5 2.7 0.037 13.5 1.8 1.4 1 1 0 1 1 1 0 Ribonuclease B OB domain CusF_Ec PF11604.3 gi|345006713|ref|YP_004809566.1| - 0.053 13.3 0.1 0.076 12.8 0.0 1.4 1 1 0 1 1 1 0 Copper binding periplasmic protein CusF DUF3179 PF11376.3 gi|345006715|ref|YP_004809568.1| - 3.7e-64 216.4 0.0 4.6e-64 216.1 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3179) tRNA-synt_2c PF01411.14 gi|345006716|ref|YP_004809569.1| - 3e-14 52.2 0.0 4.1e-14 51.7 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (A) tRNA_SAD PF07973.9 gi|345006716|ref|YP_004809569.1| - 4e-08 33.0 0.1 7.2e-08 32.1 0.1 1.4 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain HD PF01966.17 gi|345006717|ref|YP_004809570.1| - 1.2e-14 54.4 1.4 1.8e-13 50.5 0.1 2.1 2 0 0 2 2 2 2 HD domain Epimerase PF01370.16 gi|345006718|ref|YP_004809571.1| - 7.2e-30 104.1 0.2 4.6e-28 98.2 0.1 2.1 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family NAD_binding_10 PF13460.1 gi|345006718|ref|YP_004809571.1| - 5.2e-09 36.3 0.0 1.1e-08 35.3 0.0 1.5 1 0 0 1 1 1 1 NADH(P)-binding 3Beta_HSD PF01073.14 gi|345006718|ref|YP_004809571.1| - 1.4e-07 30.5 0.0 1.4e-05 23.9 0.0 2.1 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.12 gi|345006718|ref|YP_004809571.1| - 1.2e-06 27.7 0.0 0.024 13.5 0.0 2.1 2 0 0 2 2 2 2 RmlD substrate binding domain NAD_binding_4 PF07993.7 gi|345006718|ref|YP_004809571.1| - 6.8e-06 25.1 0.0 0.0027 16.6 0.0 2.3 2 0 0 2 2 2 2 Male sterility protein NmrA PF05368.8 gi|345006718|ref|YP_004809571.1| - 0.017 14.3 0.0 0.027 13.7 0.0 1.3 1 0 0 1 1 1 0 NmrA-like family adh_short PF00106.20 gi|345006718|ref|YP_004809571.1| - 0.036 13.9 0.0 0.064 13.1 0.0 1.4 1 0 0 1 1 1 0 short chain dehydrogenase PALP PF00291.20 gi|345006719|ref|YP_004809572.1| - 3.4e-54 184.1 2.4 4.5e-54 183.7 1.7 1.2 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Thiolase_N PF00108.18 gi|345006720|ref|YP_004809573.1| - 4.7e-13 48.7 0.4 1.6e-11 43.6 0.0 2.2 1 1 0 2 2 2 1 Thiolase, N-terminal domain Thiolase_C PF02803.13 gi|345006720|ref|YP_004809573.1| - 1.4e-09 37.4 1.8 2.2e-09 36.8 0.2 2.2 2 0 0 2 2 2 1 Thiolase, C-terminal domain ketoacyl-synt PF00109.21 gi|345006720|ref|YP_004809573.1| - 1.2e-08 34.7 7.1 1.3e-07 31.3 1.7 3.2 2 1 1 3 3 3 2 Beta-ketoacyl synthase, N-terminal domain Ketoacyl-synt_C PF02801.17 gi|345006720|ref|YP_004809573.1| - 0.0086 15.9 0.9 0.085 12.7 0.0 2.8 3 1 0 3 3 3 1 Beta-ketoacyl synthase, C-terminal domain DUF35 PF01796.12 gi|345006721|ref|YP_004809574.1| - 6e-14 52.0 0.9 8.3e-14 51.5 0.6 1.2 1 0 0 1 1 1 1 DUF35 OB-fold domain DUF35_N PF12172.3 gi|345006721|ref|YP_004809574.1| - 0.025 14.4 2.4 0.051 13.4 1.6 1.5 1 0 0 1 1 1 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Abhydrolase_6 PF12697.2 gi|345006722|ref|YP_004809575.1| - 3.4e-27 95.8 4.8 4.6e-27 95.3 3.3 1.2 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_5 PF12695.2 gi|345006722|ref|YP_004809575.1| - 5.2e-10 39.2 0.2 1.8e-09 37.5 0.1 1.8 1 1 0 1 1 1 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.3 gi|345006722|ref|YP_004809575.1| - 6.1e-05 22.7 0.0 0.00011 21.9 0.0 1.4 1 0 0 1 1 1 1 Putative lysophospholipase Abhydrolase_1 PF00561.15 gi|345006722|ref|YP_004809575.1| - 0.00029 20.4 0.0 0.0014 18.1 0.0 1.9 1 1 0 1 1 1 1 alpha/beta hydrolase fold Exo_endo_phos PF03372.18 gi|345006722|ref|YP_004809575.1| - 0.0055 16.6 0.0 0.0084 16.0 0.0 1.4 1 1 0 1 1 1 1 Endonuclease/Exonuclease/phosphatase family Fe_dep_repr_C PF02742.10 gi|345006723|ref|YP_004809576.1| - 1.8e-27 94.7 3.4 3.5e-27 93.8 2.3 1.5 1 0 0 1 1 1 1 Iron dependent repressor, metal binding and dimerisation domain Fe_dep_repress PF01325.14 gi|345006723|ref|YP_004809576.1| - 8.3e-18 64.0 1.1 2.2e-17 62.7 0.3 2.1 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain FeoA PF04023.9 gi|345006723|ref|YP_004809576.1| - 1.7e-13 50.3 0.3 4.2e-13 49.0 0.2 1.7 1 0 0 1 1 1 1 FeoA domain MarR_2 PF12802.2 gi|345006723|ref|YP_004809576.1| - 1e-06 28.2 0.0 3.8e-06 26.4 0.0 1.9 1 0 0 1 1 1 1 MarR family MarR PF01047.17 gi|345006723|ref|YP_004809576.1| - 9.1e-06 25.2 0.0 2.3e-05 23.9 0.0 1.7 1 0 0 1 1 1 1 MarR family Rrf2 PF02082.15 gi|345006723|ref|YP_004809576.1| - 0.00035 20.6 0.1 0.0011 18.9 0.0 1.9 2 0 0 2 2 2 1 Transcriptional regulator DUF2250 PF10007.4 gi|345006723|ref|YP_004809576.1| - 0.00042 20.1 0.1 0.00084 19.2 0.0 1.5 1 1 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) TrmB PF01978.14 gi|345006723|ref|YP_004809576.1| - 0.0019 17.8 0.1 0.0052 16.4 0.0 1.7 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_Crp_2 PF13545.1 gi|345006723|ref|YP_004809576.1| - 0.0022 17.7 0.0 0.0047 16.7 0.0 1.5 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_27 PF13463.1 gi|345006723|ref|YP_004809576.1| - 0.0034 17.6 0.1 0.02 15.1 0.0 2.2 2 0 0 2 2 2 1 Winged helix DNA-binding domain HrcA_DNA-bdg PF03444.10 gi|345006723|ref|YP_004809576.1| - 0.0038 16.6 0.0 0.0088 15.4 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding HTH_IclR PF09339.5 gi|345006723|ref|YP_004809576.1| - 0.0039 16.7 0.0 0.024 14.2 0.0 2.2 2 0 0 2 2 2 1 IclR helix-turn-helix domain Topoisom_bac PF01131.15 gi|345006723|ref|YP_004809576.1| - 0.005 15.7 0.0 0.0069 15.2 0.0 1.2 1 0 0 1 1 1 1 DNA topoisomerase HTH_20 PF12840.2 gi|345006723|ref|YP_004809576.1| - 0.0053 16.5 0.1 0.025 14.4 0.0 2.2 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|345006723|ref|YP_004809576.1| - 0.012 14.9 0.0 0.029 13.7 0.0 1.7 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_12 PF08461.5 gi|345006723|ref|YP_004809576.1| - 0.023 14.3 0.8 0.1 12.3 0.2 2.4 2 1 0 2 2 2 0 Ribonuclease R winged-helix domain FeoC PF09012.5 gi|345006723|ref|YP_004809576.1| - 0.025 14.2 0.0 0.062 13.0 0.0 1.7 2 0 0 2 2 1 0 FeoC like transcriptional regulator HTH_13 PF11972.3 gi|345006723|ref|YP_004809576.1| - 0.029 14.1 0.0 0.07 12.9 0.0 1.6 1 0 0 1 1 1 0 HTH DNA binding domain Penicillinase_R PF03965.11 gi|345006723|ref|YP_004809576.1| - 0.055 13.5 0.0 0.12 12.4 0.0 1.5 1 0 0 1 1 1 0 Penicillinase repressor HTH_5 PF01022.15 gi|345006723|ref|YP_004809576.1| - 0.069 12.8 0.0 0.15 11.7 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family Unstab_antitox PF09720.5 gi|345006723|ref|YP_004809576.1| - 0.075 12.7 2.4 0.28 10.8 0.8 2.5 2 0 0 2 2 2 0 Putative addiction module component LysE PF01810.13 gi|345006724|ref|YP_004809577.1| - 1.6e-26 92.7 11.0 4.7e-25 87.9 7.7 2.0 1 1 0 1 1 1 1 LysE type translocator Tetraspannin PF00335.15 gi|345006724|ref|YP_004809577.1| - 1.5 8.0 13.0 0.14 11.4 2.6 2.5 2 1 0 2 2 2 0 Tetraspanin family Fe-ADH_2 PF13685.1 gi|345006725|ref|YP_004809578.1| - 5.8e-58 196.1 0.2 7.3e-58 195.8 0.1 1.1 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH PF00465.14 gi|345006725|ref|YP_004809578.1| - 3.3e-21 75.3 3.6 8e-21 74.0 2.5 1.5 1 1 0 1 1 1 1 Iron-containing alcohol dehydrogenase DHQ_synthase PF01761.15 gi|345006725|ref|YP_004809578.1| - 1.6e-09 37.0 0.1 7.2e-09 34.9 0.1 1.8 1 1 0 1 1 1 1 3-dehydroquinate synthase DUF420 PF04238.7 gi|345006726|ref|YP_004809579.1| - 2.3e-37 127.9 5.6 2.3e-37 127.9 3.9 1.4 2 0 0 2 2 2 1 Protein of unknown function (DUF420) DUF3302 PF11742.3 gi|345006726|ref|YP_004809579.1| - 0.01 15.6 0.9 0.01 15.6 0.6 2.2 3 0 0 3 3 3 0 Protein of unknown function (DUF3302) DUF2231 PF09990.4 gi|345006726|ref|YP_004809579.1| - 0.015 15.5 2.1 0.015 15.5 1.5 2.3 2 1 1 3 3 3 0 Predicted membrane protein (DUF2231) MASE1 PF05231.9 gi|345006726|ref|YP_004809579.1| - 0.041 12.8 8.7 0.056 12.4 6.0 1.1 1 0 0 1 1 1 0 MASE1 DUF2306 PF10067.4 gi|345006726|ref|YP_004809579.1| - 0.16 12.0 5.6 0.14 12.3 0.9 2.8 2 1 1 3 3 3 0 Predicted membrane protein (DUF2306) TMEM220 PF15071.1 gi|345006726|ref|YP_004809579.1| - 0.24 11.8 2.7 0.75 10.2 0.3 2.4 1 1 1 2 2 2 0 Transmembrane family 220, helix Peptidase_M50 PF02163.17 gi|345006726|ref|YP_004809579.1| - 0.52 9.2 4.5 3.9 6.4 1.6 2.4 2 1 1 3 3 3 0 Peptidase family M50 PEMT PF04191.8 gi|345006726|ref|YP_004809579.1| - 1 9.4 0.0 1 9.4 0.0 3.1 3 1 1 4 4 4 0 Phospholipid methyltransferase HhH-GPD PF00730.20 gi|345006727|ref|YP_004809580.1| - 1.5e-22 79.9 0.0 2e-22 79.5 0.0 1.2 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.18 gi|345006727|ref|YP_004809580.1| - 1.7e-09 36.8 0.1 5.7e-09 35.1 0.0 2.0 2 0 0 2 2 2 1 Helix-hairpin-helix motif EndIII_4Fe-2S PF10576.4 gi|345006727|ref|YP_004809580.1| - 4.5e-06 26.6 3.6 7.6e-06 25.9 2.5 1.4 1 0 0 1 1 1 1 Iron-sulfur binding domain of endonuclease III HHH_5 PF14520.1 gi|345006727|ref|YP_004809580.1| - 2.3e-05 24.4 0.1 0.0013 18.8 0.1 2.3 1 1 1 2 2 2 2 Helix-hairpin-helix domain HHH_2 PF12826.2 gi|345006727|ref|YP_004809580.1| - 0.0067 16.2 0.1 2.6 8.0 0.0 2.3 2 0 0 2 2 2 2 Helix-hairpin-helix motif DUF3349 PF11829.3 gi|345006727|ref|YP_004809580.1| - 0.042 14.2 0.2 0.11 12.9 0.1 1.7 1 1 1 2 2 2 0 Protein of unknown function (DUF3349) Ribosomal_S13 PF00416.17 gi|345006727|ref|YP_004809580.1| - 0.051 14.0 0.3 1.6 9.2 0.0 2.7 2 1 0 2 2 2 0 Ribosomal protein S13/S18 DUF2400 PF09674.5 gi|345006727|ref|YP_004809580.1| - 0.086 12.5 0.0 0.28 10.8 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF2400) Cytochrom_B561 PF03188.11 gi|345006728|ref|YP_004809581.1| - 1 9.1 7.6 0.043 13.6 1.4 1.6 2 0 0 2 2 2 0 Eukaryotic cytochrome b561 DUF4131 PF13567.1 gi|345006728|ref|YP_004809581.1| - 1.9 7.8 5.6 0.27 10.6 0.7 1.8 1 1 1 2 2 2 0 Domain of unknown function (DUF4131) Copper-bind PF00127.15 gi|345006730|ref|YP_004809583.1| - 1.4e-16 60.5 0.1 2.2e-16 59.8 0.0 1.3 1 0 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family TAT_signal PF10518.4 gi|345006730|ref|YP_004809583.1| - 0.00015 21.4 6.8 0.00015 21.4 4.7 3.2 2 1 0 2 2 2 1 TAT (twin-arginine translocation) pathway signal sequence Herpes_capsid PF06112.6 gi|345006730|ref|YP_004809583.1| - 3.7 7.5 5.6 6.5 6.7 3.9 1.4 1 0 0 1 1 1 0 Gammaherpesvirus capsid protein AGTRAP PF06396.6 gi|345006731|ref|YP_004809584.1| - 0.022 14.4 1.6 0.029 14.0 1.0 1.4 1 1 0 1 1 1 0 Angiotensin II, type I receptor-associated protein (AGTRAP) Cytochrom_B_N_2 PF13631.1 gi|345006732|ref|YP_004809585.1| - 9.2e-42 142.6 13.8 2.5e-41 141.2 8.5 2.0 2 0 0 2 2 2 1 Cytochrome b(N-terminal)/b6/petB Cytochrom_B_N PF00033.14 gi|345006732|ref|YP_004809585.1| - 5.3e-11 42.2 14.4 7.6e-11 41.7 10.0 1.3 1 0 0 1 1 1 1 Cytochrome b(N-terminal)/b6/petB PepSY_TM PF03929.11 gi|345006732|ref|YP_004809585.1| - 1.6 9.2 0.0 1.6 9.2 0.0 4.2 4 1 0 4 4 4 0 PepSY-associated TM helix Cytochrom_B_C PF00032.12 gi|345006733|ref|YP_004809586.1| - 1.2e-07 31.8 0.0 2.6e-07 30.7 0.0 1.6 1 1 0 1 1 1 1 Cytochrome b(C-terminal)/b6/petD MHYT PF03707.11 gi|345006734|ref|YP_004809587.1| - 0.58 10.3 9.5 0.11 12.5 0.9 2.2 2 0 0 2 2 2 0 Bacterial signalling protein N terminal repeat EBP PF05241.7 gi|345006735|ref|YP_004809588.1| - 0.0079 15.2 0.3 0.35 9.8 0.1 2.0 2 0 0 2 2 2 2 Emopamil binding protein MFS_1 PF07690.11 gi|345006735|ref|YP_004809588.1| - 0.015 14.0 2.5 0.018 13.7 1.7 1.0 1 0 0 1 1 1 0 Major Facilitator Superfamily DctM PF06808.7 gi|345006737|ref|YP_004809590.1| - 0.00077 18.1 3.2 0.00096 17.8 2.2 1.0 1 0 0 1 1 1 1 DctM-like transporters Permease PF02405.11 gi|345006737|ref|YP_004809590.1| - 0.0032 16.9 3.3 0.0038 16.7 1.5 1.5 2 0 0 2 2 2 1 Permease TctB PF07331.6 gi|345006737|ref|YP_004809590.1| - 0.0045 16.6 2.8 0.007 16.0 1.9 1.3 1 1 0 1 1 1 1 Tripartite tricarboxylate transporter TctB family FxsA PF04186.8 gi|345006737|ref|YP_004809590.1| - 0.0088 15.6 1.2 0.019 14.5 0.4 1.7 1 1 1 2 2 2 1 FxsA cytoplasmic membrane protein Flavi_NS4A PF01350.12 gi|345006737|ref|YP_004809590.1| - 0.06 12.9 0.9 0.11 12.0 0.2 1.7 1 1 1 2 2 2 0 Flavivirus non-structural protein NS4A DUF202 PF02656.10 gi|345006737|ref|YP_004809590.1| - 0.17 12.1 2.8 8.4 6.6 2.0 2.2 1 1 0 1 1 1 0 Domain of unknown function (DUF202) DUF456 PF04306.8 gi|345006737|ref|YP_004809590.1| - 0.25 11.3 5.5 0.42 10.6 0.1 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF456) PRA1 PF03208.14 gi|345006737|ref|YP_004809590.1| - 0.29 10.4 4.2 0.24 10.7 1.8 1.6 1 1 1 2 2 2 0 PRA1 family protein DUF2933 PF11666.3 gi|345006737|ref|YP_004809590.1| - 0.36 10.4 9.0 2 8.0 0.0 3.2 3 0 0 3 3 3 0 Protein of unknown function (DUF2933) NAD_kinase PF01513.16 gi|345006738|ref|YP_004809591.1| - 1.6e-12 46.8 0.0 1.9e-12 46.5 0.0 1.1 1 0 0 1 1 1 1 ATP-NAD kinase Peptidase_M28 PF04389.12 gi|345006739|ref|YP_004809592.1| - 4.6e-26 91.6 0.1 6.9e-26 91.0 0.0 1.3 1 0 0 1 1 1 1 Peptidase family M28 PA PF02225.17 gi|345006739|ref|YP_004809592.1| - 3.2e-12 46.0 0.0 5.4e-12 45.2 0.0 1.4 1 0 0 1 1 1 1 PA domain Peptidase_M20 PF01546.23 gi|345006739|ref|YP_004809592.1| - 0.001 18.6 0.2 0.0022 17.5 0.0 1.7 2 0 0 2 2 2 1 Peptidase family M20/M25/M40 Peptidase_M42 PF05343.9 gi|345006739|ref|YP_004809592.1| - 0.0054 15.5 0.3 0.0099 14.6 0.2 1.4 1 0 0 1 1 1 1 M42 glutamyl aminopeptidase Amino_oxidase PF01593.19 gi|345006740|ref|YP_004809593.1| - 1.7e-40 139.4 0.7 2.1e-40 139.1 0.5 1.1 1 0 0 1 1 1 1 Flavin containing amine oxidoreductase NAD_binding_8 PF13450.1 gi|345006740|ref|YP_004809593.1| - 6.8e-16 58.0 0.3 1.9e-15 56.6 0.2 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain DAO PF01266.19 gi|345006740|ref|YP_004809593.1| - 9.8e-15 54.3 9.3 4.2e-09 35.7 0.9 2.2 2 0 0 2 2 2 2 FAD dependent oxidoreductase HI0933_like PF03486.9 gi|345006740|ref|YP_004809593.1| - 2.6e-07 29.4 1.1 0.00021 19.9 0.2 2.1 2 0 0 2 2 2 2 HI0933-like protein Pyr_redox PF00070.22 gi|345006740|ref|YP_004809593.1| - 3.6e-07 30.4 2.0 0.0017 18.6 0.5 2.5 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_2 PF07992.9 gi|345006740|ref|YP_004809593.1| - 1.9e-05 24.6 0.4 0.00014 21.7 0.1 2.2 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.19 gi|345006740|ref|YP_004809593.1| - 3.1e-05 22.9 5.5 0.0001 21.3 1.5 2.2 2 0 0 2 2 2 1 FAD binding domain FAD_oxidored PF12831.2 gi|345006740|ref|YP_004809593.1| - 0.00012 21.3 3.8 0.00013 21.2 1.1 1.9 2 0 0 2 2 2 1 FAD dependent oxidoreductase Pyr_redox_3 PF13738.1 gi|345006740|ref|YP_004809593.1| - 0.00067 19.7 0.0 0.11 12.5 0.0 2.2 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.17 gi|345006740|ref|YP_004809593.1| - 0.00081 18.3 0.7 0.0013 17.7 0.5 1.2 1 0 0 1 1 1 1 Glucose inhibited division protein A FAD_binding_3 PF01494.14 gi|345006740|ref|YP_004809593.1| - 0.00081 18.5 3.9 0.0059 15.7 0.3 2.2 2 0 0 2 2 2 1 FAD binding domain Thi4 PF01946.12 gi|345006740|ref|YP_004809593.1| - 0.0012 17.9 1.9 0.005 15.9 0.2 2.1 2 0 0 2 2 2 1 Thi4 family NAD_binding_10 PF13460.1 gi|345006740|ref|YP_004809593.1| - 0.012 15.6 4.5 0.035 14.0 0.1 2.3 2 0 0 2 2 2 0 NADH(P)-binding AlaDh_PNT_C PF01262.16 gi|345006740|ref|YP_004809593.1| - 0.021 14.3 0.1 0.04 13.4 0.1 1.4 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain ApbA PF02558.11 gi|345006740|ref|YP_004809593.1| - 0.032 13.6 0.4 0.12 11.8 0.1 2.0 2 0 0 2 2 2 0 Ketopantoate reductase PanE/ApbA TrkA_N PF02254.13 gi|345006740|ref|YP_004809593.1| - 0.037 14.0 3.1 3.1 7.8 0.1 2.4 2 0 0 2 2 2 0 TrkA-N domain Trp_halogenase PF04820.9 gi|345006740|ref|YP_004809593.1| - 0.048 12.2 0.6 0.088 11.4 0.4 1.4 1 0 0 1 1 1 0 Tryptophan halogenase NAD_binding_9 PF13454.1 gi|345006740|ref|YP_004809593.1| - 0.27 10.9 4.5 0.48 10.1 0.1 2.6 2 0 0 2 2 2 0 FAD-NAD(P)-binding HTH_24 PF13412.1 gi|345006741|ref|YP_004809594.1| - 1.2e-10 40.6 0.0 2.9e-10 39.3 0.0 1.7 2 0 0 2 2 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|345006741|ref|YP_004809594.1| - 2e-10 40.2 0.2 6.1e-10 38.6 0.2 1.9 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.1 gi|345006741|ref|YP_004809594.1| - 1.7e-09 37.8 0.5 5.3e-08 33.0 0.0 2.6 2 0 0 2 2 2 1 Winged helix DNA-binding domain MarR PF01047.17 gi|345006741|ref|YP_004809594.1| - 9.5e-08 31.6 0.0 2.8e-07 30.1 0.0 1.7 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.2 gi|345006741|ref|YP_004809594.1| - 2.3e-06 27.3 0.2 6.4e-06 25.8 0.1 1.8 2 0 0 2 2 1 1 Helix-turn-helix domain HTH_Crp_2 PF13545.1 gi|345006741|ref|YP_004809594.1| - 3.8e-06 26.5 0.0 1.2e-05 24.9 0.0 1.9 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_11 PF08279.7 gi|345006741|ref|YP_004809594.1| - 6e-06 25.8 0.1 1.1e-05 24.9 0.0 1.5 1 0 0 1 1 1 1 HTH domain DUF387 PF04079.11 gi|345006741|ref|YP_004809594.1| - 5.8e-05 22.5 0.3 0.00016 21.0 0.1 1.7 1 1 1 2 2 2 1 Putative transcriptional regulators (Ypuh-like) HTH_45 PF14947.1 gi|345006741|ref|YP_004809594.1| - 6.5e-05 22.6 0.0 0.00011 21.9 0.0 1.4 1 1 0 1 1 1 1 Winged helix-turn-helix HTH_13 PF11972.3 gi|345006741|ref|YP_004809594.1| - 0.00018 21.2 0.2 0.00051 19.8 0.0 1.9 2 0 0 2 2 1 1 HTH DNA binding domain HTH_IclR PF09339.5 gi|345006741|ref|YP_004809594.1| - 0.00022 20.7 0.0 0.0005 19.5 0.0 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain Fe_dep_repress PF01325.14 gi|345006741|ref|YP_004809594.1| - 0.0017 18.2 1.7 0.0018 18.1 0.0 1.9 2 0 0 2 2 1 1 Iron dependent repressor, N-terminal DNA binding domain Rrf2 PF02082.15 gi|345006741|ref|YP_004809594.1| - 0.0017 18.4 0.0 0.0071 16.4 0.0 1.9 2 0 0 2 2 2 1 Transcriptional regulator HTH_12 PF08461.5 gi|345006741|ref|YP_004809594.1| - 0.0027 17.4 0.2 0.007 16.0 0.1 1.8 1 1 0 1 1 1 1 Ribonuclease R winged-helix domain GntR PF00392.16 gi|345006741|ref|YP_004809594.1| - 0.0038 16.6 0.3 0.011 15.2 0.2 1.8 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_5 PF01022.15 gi|345006741|ref|YP_004809594.1| - 0.0039 16.8 0.0 0.0074 15.9 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family DUF4423 PF14394.1 gi|345006741|ref|YP_004809594.1| - 0.0041 16.6 0.0 0.0067 15.9 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4423) TrmB PF01978.14 gi|345006741|ref|YP_004809594.1| - 0.0046 16.6 0.2 0.011 15.3 0.1 1.7 2 0 0 2 2 1 1 Sugar-specific transcriptional regulator TrmB HemN_C PF06969.11 gi|345006741|ref|YP_004809594.1| - 0.0053 16.7 0.0 0.017 15.1 0.0 1.9 1 0 0 1 1 1 1 HemN C-terminal domain HTH_AsnC-type PF13404.1 gi|345006741|ref|YP_004809594.1| - 0.01 15.3 0.3 0.048 13.1 0.0 2.3 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain LexA_DNA_bind PF01726.11 gi|345006741|ref|YP_004809594.1| - 0.01 15.3 0.1 0.037 13.5 0.0 2.0 2 0 0 2 2 2 0 LexA DNA binding domain HTH_29 PF13551.1 gi|345006741|ref|YP_004809594.1| - 0.011 15.8 0.9 0.023 14.8 0.2 1.8 2 0 0 2 2 2 0 Winged helix-turn helix HTH_23 PF13384.1 gi|345006741|ref|YP_004809594.1| - 0.017 14.7 0.0 0.041 13.5 0.0 1.7 1 0 0 1 1 1 0 Homeodomain-like domain FaeA PF04703.7 gi|345006741|ref|YP_004809594.1| - 0.019 15.1 0.3 0.073 13.2 0.0 2.0 2 0 0 2 2 2 0 FaeA-like protein Mnd1 PF03962.10 gi|345006741|ref|YP_004809594.1| - 0.042 13.5 0.1 0.079 12.6 0.1 1.4 1 1 0 1 1 1 0 Mnd1 family HTH_36 PF13730.1 gi|345006741|ref|YP_004809594.1| - 0.046 13.8 0.0 0.079 13.1 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain DUF4364 PF14277.1 gi|345006741|ref|YP_004809594.1| - 0.046 13.3 0.0 0.07 12.7 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) DUF2250 PF10007.4 gi|345006741|ref|YP_004809594.1| - 0.062 13.2 0.0 0.12 12.2 0.0 1.5 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) Rio2_N PF09202.6 gi|345006741|ref|YP_004809594.1| - 0.11 12.5 0.0 0.19 11.8 0.0 1.3 1 0 0 1 1 1 0 Rio2, N-terminal HTH_3 PF01381.17 gi|345006741|ref|YP_004809594.1| - 0.11 12.3 0.1 0.21 11.4 0.1 1.5 1 0 0 1 1 1 0 Helix-turn-helix DnaJ PF00226.26 gi|345006743|ref|YP_004809596.1| - 4e-11 42.4 0.1 5.8e-11 41.9 0.0 1.3 1 0 0 1 1 1 1 DnaJ domain RPT PF13446.1 gi|345006743|ref|YP_004809596.1| - 0.0072 15.7 0.1 0.014 14.7 0.0 1.5 1 0 0 1 1 1 1 A repeated domain in UCH-protein Peptidase_S9 PF00326.16 gi|345006744|ref|YP_004809597.1| - 3.5e-49 166.9 0.0 5.6e-49 166.2 0.0 1.3 1 0 0 1 1 1 1 Prolyl oligopeptidase family Abhydrolase_5 PF12695.2 gi|345006744|ref|YP_004809597.1| - 6.8e-12 45.3 0.0 1.3e-11 44.4 0.0 1.4 1 0 0 1 1 1 1 Alpha/beta hydrolase family Peptidase_S15 PF02129.13 gi|345006744|ref|YP_004809597.1| - 9e-12 44.9 0.0 5.2e-08 32.6 0.0 2.3 1 1 1 2 2 2 2 X-Pro dipeptidyl-peptidase (S15 family) DLH PF01738.13 gi|345006744|ref|YP_004809597.1| - 1.5e-11 43.9 0.0 1.1e-06 28.1 0.0 2.1 2 0 0 2 2 2 2 Dienelactone hydrolase family Abhydrolase_6 PF12697.2 gi|345006744|ref|YP_004809597.1| - 8.3e-10 38.9 0.0 3.4e-09 36.9 0.0 1.9 1 1 0 1 1 1 1 Alpha/beta hydrolase family PD40 PF07676.7 gi|345006744|ref|YP_004809597.1| - 2.5e-07 30.2 1.3 0.15 11.7 0.0 3.8 3 0 0 3 3 3 2 WD40-like Beta Propeller Repeat AXE1 PF05448.7 gi|345006744|ref|YP_004809597.1| - 5.8e-06 25.0 0.0 0.067 11.6 0.0 2.2 1 1 1 2 2 2 2 Acetyl xylan esterase (AXE1) Abhydrolase_1 PF00561.15 gi|345006744|ref|YP_004809597.1| - 0.00012 21.7 0.0 0.11 12.0 0.0 2.6 1 1 1 2 2 2 2 alpha/beta hydrolase fold BAAT_C PF08840.6 gi|345006744|ref|YP_004809597.1| - 0.00065 19.4 0.0 0.018 14.7 0.0 2.2 1 1 0 1 1 1 1 BAAT / Acyl-CoA thioester hydrolase C terminal Abhydrolase_3 PF07859.8 gi|345006744|ref|YP_004809597.1| - 0.0011 18.6 0.0 0.039 13.5 0.0 2.3 1 1 0 1 1 1 1 alpha/beta hydrolase fold DPPIV_N PF00930.16 gi|345006744|ref|YP_004809597.1| - 0.0011 17.5 0.0 0.43 9.1 0.0 3.6 1 1 1 3 3 3 1 Dipeptidyl peptidase IV (DPP IV) N-terminal region Abhydrolase_2 PF02230.11 gi|345006744|ref|YP_004809597.1| - 0.0015 18.0 0.0 0.63 9.4 0.0 2.3 2 0 0 2 2 2 2 Phospholipase/Carboxylesterase Peptidase_S28 PF05577.7 gi|345006744|ref|YP_004809597.1| - 0.015 13.9 0.0 0.021 13.3 0.0 1.1 1 0 0 1 1 1 0 Serine carboxypeptidase S28 Abhydrolase_4 PF08386.5 gi|345006744|ref|YP_004809597.1| - 0.02 14.7 0.0 0.046 13.6 0.0 1.5 1 0 0 1 1 1 0 TAP-like protein PQQ PF01011.16 gi|345006744|ref|YP_004809597.1| - 0.045 13.3 0.1 25 4.6 0.0 3.9 4 0 0 4 4 4 0 PQQ enzyme repeat DUF829 PF05705.9 gi|345006744|ref|YP_004809597.1| - 0.15 11.7 0.0 0.24 11.0 0.0 1.3 1 0 0 1 1 1 0 Eukaryotic protein of unknown function (DUF829) G3P_acyltransf PF02660.10 gi|345006745|ref|YP_004809598.1| - 0.11 12.0 0.6 0.12 11.9 0.4 1.0 1 0 0 1 1 1 0 Glycerol-3-phosphate acyltransferase DUF605 PF04652.11 gi|345006746|ref|YP_004809599.1| - 7.3 5.8 10.1 9.5 5.4 7.0 1.1 1 0 0 1 1 1 0 Vta1 like bPH_2 PF03703.9 gi|345006747|ref|YP_004809600.1| - 4.7e-07 29.7 0.0 6.6e-07 29.2 0.0 1.3 1 0 0 1 1 1 1 Bacterial PH domain RDD PF06271.7 gi|345006748|ref|YP_004809601.1| - 3.1e-24 85.4 0.8 3.5e-24 85.2 0.6 1.0 1 0 0 1 1 1 1 RDD family LAB_N PF07578.6 gi|345006748|ref|YP_004809601.1| - 0.045 13.6 0.1 0.088 12.7 0.1 1.5 1 0 0 1 1 1 0 Lipid A Biosynthesis N-terminal domain Gly-zipper_Omp PF13488.1 gi|345006748|ref|YP_004809601.1| - 0.11 12.0 0.5 0.11 12.0 0.3 2.3 3 0 0 3 3 3 0 Glycine zipper Rick_17kDa_Anti PF05433.10 gi|345006748|ref|YP_004809601.1| - 3 7.5 7.4 0.33 10.6 1.0 2.4 2 1 1 3 3 3 0 Glycine zipper 2TM domain B12-binding PF02310.14 gi|345006749|ref|YP_004809602.1| - 1.4e-20 73.3 0.5 1.6e-20 73.1 0.3 1.0 1 0 0 1 1 1 1 B12 binding domain BcrAD_BadFG PF01869.15 gi|345006749|ref|YP_004809602.1| - 0.0065 15.8 0.0 0.016 14.4 0.0 1.5 1 1 0 1 1 1 1 BadF/BadG/BcrA/BcrD ATPase family Staph_haemo PF05480.6 gi|345006749|ref|YP_004809602.1| - 0.11 12.1 0.1 0.31 10.7 0.1 1.7 1 0 0 1 1 1 0 Staphylococcus haemolytic protein ArgK PF03308.11 gi|345006750|ref|YP_004809603.1| - 2.7e-96 321.4 1.0 3.4e-96 321.1 0.7 1.1 1 0 0 1 1 1 1 ArgK protein cobW PF02492.14 gi|345006750|ref|YP_004809603.1| - 3.6e-09 36.3 1.2 3.1e-08 33.2 0.9 2.2 1 1 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain AAA_17 PF13207.1 gi|345006750|ref|YP_004809603.1| - 1.8e-06 28.7 1.0 5.1e-06 27.2 0.1 2.2 2 1 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|345006750|ref|YP_004809603.1| - 1.8e-06 28.0 1.4 3.7e-05 23.7 0.0 2.3 2 0 0 2 2 2 1 AAA ATPase domain AAA_10 PF12846.2 gi|345006750|ref|YP_004809603.1| - 8.2e-06 25.4 1.8 4.1e-05 23.1 1.3 2.0 1 1 0 1 1 1 1 AAA-like domain NTPase_1 PF03266.10 gi|345006750|ref|YP_004809603.1| - 1e-05 25.2 0.2 0.00033 20.3 0.0 2.5 2 0 0 2 2 2 1 NTPase SRP54 PF00448.17 gi|345006750|ref|YP_004809603.1| - 1.9e-05 24.2 0.2 5.8e-05 22.6 0.1 1.8 1 1 0 1 1 1 1 SRP54-type protein, GTPase domain AAA_18 PF13238.1 gi|345006750|ref|YP_004809603.1| - 2.3e-05 24.7 1.0 0.0004 20.6 0.1 2.9 2 1 1 3 3 3 1 AAA domain ATP_bind_1 PF03029.12 gi|345006750|ref|YP_004809603.1| - 4.8e-05 23.0 0.2 0.0002 20.9 0.0 2.0 2 1 0 2 2 2 1 Conserved hypothetical ATP binding protein AAA_22 PF13401.1 gi|345006750|ref|YP_004809603.1| - 0.0002 21.4 0.1 0.00077 19.6 0.0 2.0 2 0 0 2 2 2 1 AAA domain CbiA PF01656.18 gi|345006750|ref|YP_004809603.1| - 0.00021 20.7 0.1 0.00041 19.8 0.1 1.5 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_19 PF13245.1 gi|345006750|ref|YP_004809603.1| - 0.00023 20.8 0.3 0.0016 18.1 0.1 2.5 1 1 1 2 2 1 1 Part of AAA domain ABC_tran PF00005.22 gi|345006750|ref|YP_004809603.1| - 0.00023 21.4 0.1 0.00046 20.4 0.0 1.5 1 0 0 1 1 1 1 ABC transporter GTP_EFTU PF00009.22 gi|345006750|ref|YP_004809603.1| - 0.00031 20.2 0.1 0.54 9.6 0.0 2.2 2 0 0 2 2 2 2 Elongation factor Tu GTP binding domain KAP_NTPase PF07693.9 gi|345006750|ref|YP_004809603.1| - 0.0006 18.9 0.0 0.00071 18.6 0.0 1.2 1 0 0 1 1 1 1 KAP family P-loop domain AAA_30 PF13604.1 gi|345006750|ref|YP_004809603.1| - 0.00068 19.2 1.8 0.0022 17.5 0.0 2.3 2 0 0 2 2 2 1 AAA domain MobB PF03205.9 gi|345006750|ref|YP_004809603.1| - 0.00091 18.9 0.2 0.0026 17.4 0.1 1.9 1 1 1 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B TrwB_AAD_bind PF10412.4 gi|345006750|ref|YP_004809603.1| - 0.0015 17.1 0.1 0.0028 16.3 0.0 1.3 1 0 0 1 1 1 1 Type IV secretion-system coupling protein DNA-binding domain KTI12 PF08433.5 gi|345006750|ref|YP_004809603.1| - 0.0016 17.7 0.0 0.0032 16.7 0.0 1.5 1 0 0 1 1 1 1 Chromatin associated protein KTI12 AAA_29 PF13555.1 gi|345006750|ref|YP_004809603.1| - 0.0018 17.7 0.5 0.0035 16.8 0.4 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_28 PF13521.1 gi|345006750|ref|YP_004809603.1| - 0.0039 17.1 1.8 0.0062 16.5 0.0 2.1 2 1 0 2 2 2 1 AAA domain NB-ARC PF00931.17 gi|345006750|ref|YP_004809603.1| - 0.0051 15.7 0.0 0.011 14.6 0.0 1.4 1 0 0 1 1 1 1 NB-ARC domain AAA_33 PF13671.1 gi|345006750|ref|YP_004809603.1| - 0.0074 16.1 0.7 0.018 14.9 0.0 2.0 2 1 0 2 2 2 1 AAA domain DUF258 PF03193.11 gi|345006750|ref|YP_004809603.1| - 0.0086 15.2 0.1 0.064 12.4 0.0 2.2 2 0 0 2 2 2 1 Protein of unknown function, DUF258 NACHT PF05729.7 gi|345006750|ref|YP_004809603.1| - 0.01 15.4 0.2 0.032 13.8 0.0 1.9 2 0 0 2 2 2 0 NACHT domain AAA_25 PF13481.1 gi|345006750|ref|YP_004809603.1| - 0.016 14.6 0.0 0.037 13.4 0.0 1.6 1 0 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.18 gi|345006750|ref|YP_004809603.1| - 0.016 15.1 0.1 0.042 13.8 0.1 1.9 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_14 PF13173.1 gi|345006750|ref|YP_004809603.1| - 0.019 14.8 0.0 0.036 13.9 0.0 1.5 1 0 0 1 1 1 0 AAA domain Miro PF08477.8 gi|345006750|ref|YP_004809603.1| - 0.025 15.0 0.2 0.083 13.3 0.1 1.9 2 0 0 2 2 1 0 Miro-like protein KaiC PF06745.8 gi|345006750|ref|YP_004809603.1| - 0.026 13.6 0.1 0.041 12.9 0.1 1.3 1 0 0 1 1 1 0 KaiC RNA_helicase PF00910.17 gi|345006750|ref|YP_004809603.1| - 0.031 14.4 0.0 0.14 12.3 0.0 1.9 2 0 0 2 2 2 0 RNA helicase AAA_5 PF07728.9 gi|345006750|ref|YP_004809603.1| - 0.033 13.9 0.1 0.24 11.1 0.0 2.2 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) Zeta_toxin PF06414.7 gi|345006750|ref|YP_004809603.1| - 0.035 13.1 0.0 0.088 11.8 0.0 1.7 1 0 0 1 1 1 0 Zeta toxin PRK PF00485.13 gi|345006750|ref|YP_004809603.1| - 0.037 13.5 0.0 0.075 12.5 0.0 1.5 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family Viral_helicase1 PF01443.13 gi|345006750|ref|YP_004809603.1| - 0.039 13.4 0.1 0.12 11.9 0.0 1.8 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase DUF87 PF01935.12 gi|345006750|ref|YP_004809603.1| - 0.057 13.2 0.7 0.15 11.8 0.1 1.9 2 0 0 2 2 2 0 Domain of unknown function DUF87 LpxK PF02606.9 gi|345006750|ref|YP_004809603.1| - 0.076 11.9 0.1 0.12 11.3 0.1 1.3 1 0 0 1 1 1 0 Tetraacyldisaccharide-1-P 4'-kinase FeoB_N PF02421.13 gi|345006750|ref|YP_004809603.1| - 0.082 12.1 0.0 1.8 7.8 0.0 2.4 2 0 0 2 2 2 0 Ferrous iron transport protein B Thymidylate_kin PF02223.12 gi|345006750|ref|YP_004809603.1| - 0.1 11.9 0.0 0.19 11.0 0.0 1.4 1 0 0 1 1 1 0 Thymidylate kinase DUF815 PF05673.8 gi|345006750|ref|YP_004809603.1| - 0.12 11.2 0.0 0.22 10.4 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF815) DUF2075 PF09848.4 gi|345006750|ref|YP_004809603.1| - 0.13 11.2 0.0 0.19 10.6 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) Epimerase PF01370.16 gi|345006751|ref|YP_004809604.1| - 6.2e-27 94.5 0.4 2.6e-25 89.2 0.3 2.1 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family NAD_binding_10 PF13460.1 gi|345006751|ref|YP_004809604.1| - 3.2e-12 46.8 0.4 1.1e-11 45.0 0.3 1.9 1 1 0 1 1 1 1 NADH(P)-binding 3Beta_HSD PF01073.14 gi|345006751|ref|YP_004809604.1| - 1.8e-09 36.7 0.0 2.7e-07 29.5 0.0 2.1 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.12 gi|345006751|ref|YP_004809604.1| - 1.8e-06 27.0 0.1 0.00057 18.8 0.0 2.1 2 0 0 2 2 2 2 RmlD substrate binding domain NAD_binding_4 PF07993.7 gi|345006751|ref|YP_004809604.1| - 3.6e-05 22.8 0.0 0.22 10.4 0.0 2.4 2 0 0 2 2 2 2 Male sterility protein TrkA_N PF02254.13 gi|345006751|ref|YP_004809604.1| - 0.017 15.0 0.0 0.033 14.1 0.0 1.5 1 0 0 1 1 1 0 TrkA-N domain NmrA PF05368.8 gi|345006751|ref|YP_004809604.1| - 0.021 14.0 0.0 0.031 13.5 0.0 1.3 1 0 0 1 1 1 0 NmrA-like family adh_short PF00106.20 gi|345006751|ref|YP_004809604.1| - 0.048 13.5 0.1 0.21 11.4 0.1 2.1 1 1 1 2 2 2 0 short chain dehydrogenase MoCF_biosynth PF00994.19 gi|345006752|ref|YP_004809605.1| - 1.3e-31 108.9 0.0 2.6e-31 107.9 0.0 1.5 1 1 0 1 1 1 1 Probable molybdopterin binding domain PcrB PF01884.12 gi|345006752|ref|YP_004809605.1| - 0.11 11.7 0.0 0.16 11.2 0.0 1.3 1 0 0 1 1 1 0 PcrB family AhpC-TSA PF00578.16 gi|345006753|ref|YP_004809606.1| - 6.7e-23 80.7 0.0 7.9e-23 80.4 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.5 gi|345006753|ref|YP_004809606.1| - 6.6e-19 67.9 0.0 7.8e-19 67.6 0.0 1.0 1 0 0 1 1 1 1 Redoxin AhpC-TSA_2 PF13911.1 gi|345006753|ref|YP_004809606.1| - 0.0018 18.1 0.0 0.11 12.4 0.0 2.3 1 1 0 1 1 1 1 AhpC/TSA antioxidant enzyme DUF899 PF05988.7 gi|345006753|ref|YP_004809606.1| - 0.0041 16.5 0.0 0.0051 16.2 0.0 1.1 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF899) Thioredoxin_8 PF13905.1 gi|345006753|ref|YP_004809606.1| - 0.058 13.5 0.0 0.12 12.4 0.0 1.6 1 1 0 1 1 1 0 Thioredoxin-like Amidase_2 PF01510.20 gi|345006753|ref|YP_004809606.1| - 0.11 12.6 0.0 0.43 10.6 0.1 1.8 1 1 1 2 2 2 0 N-acetylmuramoyl-L-alanine amidase OrfB_Zn_ribbon PF07282.6 gi|345006754|ref|YP_004809607.1| - 1.8e-19 69.1 1.1 3.2e-19 68.3 0.8 1.4 1 0 0 1 1 1 1 Putative transposase DNA-binding domain Glycohydro_20b2 PF14845.1 gi|345006754|ref|YP_004809607.1| - 0.3 11.7 3.4 2.5 8.7 0.0 2.6 2 1 0 2 2 2 0 beta-acetyl hexosaminidase like Zn_Tnp_IS1595 PF12760.2 gi|345006754|ref|YP_004809607.1| - 0.75 9.6 4.8 1.6 8.6 3.3 1.5 1 0 0 1 1 1 0 Transposase zinc-ribbon domain DUF106 PF01956.11 gi|345006755|ref|YP_004809608.1| - 1.7e-43 148.0 0.4 2.1e-43 147.7 0.3 1.1 1 0 0 1 1 1 1 Integral membrane protein DUF106 ADK PF00406.17 gi|345006756|ref|YP_004809609.1| - 1.7e-42 144.8 0.0 2.5e-42 144.2 0.0 1.2 1 0 0 1 1 1 1 Adenylate kinase AAA_17 PF13207.1 gi|345006756|ref|YP_004809609.1| - 1.9e-11 44.8 3.6 8.8e-11 42.6 2.5 1.9 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|345006756|ref|YP_004809609.1| - 2.2e-09 37.3 0.0 4.2e-07 29.9 0.0 2.2 1 1 1 2 2 2 2 AAA domain AAA_18 PF13238.1 gi|345006756|ref|YP_004809609.1| - 2.7e-08 34.1 1.1 2.6e-07 30.9 0.5 2.4 2 1 0 2 2 2 1 AAA domain ADK_lid PF05191.9 gi|345006756|ref|YP_004809609.1| - 3.8e-07 29.6 0.6 8.3e-07 28.5 0.3 1.6 2 0 0 2 2 2 1 Adenylate kinase, active site lid Thymidylate_kin PF02223.12 gi|345006756|ref|YP_004809609.1| - 0.019 14.3 1.3 2 7.7 0.0 2.9 2 1 1 3 3 3 0 Thymidylate kinase Zeta_toxin PF06414.7 gi|345006756|ref|YP_004809609.1| - 0.055 12.5 0.2 0.28 10.2 0.0 2.0 2 0 0 2 2 2 0 Zeta toxin RuvB_N PF05496.7 gi|345006756|ref|YP_004809609.1| - 0.064 12.2 0.0 0.1 11.6 0.0 1.3 1 0 0 1 1 1 0 Holliday junction DNA helicase ruvB N-terminus AAA_22 PF13401.1 gi|345006756|ref|YP_004809609.1| - 0.13 12.4 0.0 0.45 10.6 0.0 1.9 2 0 0 2 2 2 0 AAA domain Acetyltransf_1 PF00583.19 gi|345006758|ref|YP_004809611.1| - 1.9e-11 43.7 0.3 2.2e-08 34.0 0.0 2.4 2 0 0 2 2 2 2 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|345006758|ref|YP_004809611.1| - 0.00068 19.7 3.6 0.083 13.0 0.1 3.0 2 2 0 2 2 2 2 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|345006758|ref|YP_004809611.1| - 0.002 17.8 0.1 0.078 12.7 0.0 2.5 2 0 0 2 2 2 1 FR47-like protein Acetyltransf_CG PF14542.1 gi|345006758|ref|YP_004809611.1| - 0.073 12.9 0.3 1.3 8.9 0.0 2.3 2 0 0 2 2 2 0 GCN5-related N-acetyl-transferase Asparaginase PF00710.15 gi|345006759|ref|YP_004809612.1| - 1.1e-80 270.8 0.1 1.3e-80 270.6 0.1 1.0 1 0 0 1 1 1 1 Asparaginase QueT PF06177.6 gi|345006760|ref|YP_004809613.1| - 0.036 14.0 2.2 0.045 13.7 1.5 1.1 1 0 0 1 1 1 0 QueT transporter DUF4191 PF13829.1 gi|345006760|ref|YP_004809613.1| - 0.17 10.9 1.1 0.23 10.5 0.8 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4191) DUF3353 PF11833.3 gi|345006760|ref|YP_004809613.1| - 1.9 7.9 9.7 0.85 9.0 0.7 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF3353) Rhomboid PF01694.17 gi|345006760|ref|YP_004809613.1| - 5.1 7.1 13.2 0.52 10.3 1.6 2.1 2 0 0 2 2 2 0 Rhomboid family 7TM-7TMR_HD PF07698.6 gi|345006760|ref|YP_004809613.1| - 6.1 6.2 15.6 13 5.1 10.8 1.5 1 1 0 1 1 1 0 7TM receptor with intracellular HD hydrolase HTH_5 PF01022.15 gi|345006761|ref|YP_004809614.1| - 8.5e-18 63.7 0.4 6.1e-16 57.8 0.2 2.3 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|345006761|ref|YP_004809614.1| - 1.4e-13 50.3 1.5 2.2e-12 46.5 0.1 2.5 2 0 0 2 2 2 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|345006761|ref|YP_004809614.1| - 1.6e-13 50.1 3.2 4.2e-08 32.7 0.1 2.4 2 0 0 2 2 2 2 MarR family TrmB PF01978.14 gi|345006761|ref|YP_004809614.1| - 1.6e-11 43.7 0.2 3.9e-06 26.4 0.0 2.5 2 0 0 2 2 2 2 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.1 gi|345006761|ref|YP_004809614.1| - 1.7e-11 43.2 0.2 3.2e-08 32.8 0.0 2.5 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding HTH_27 PF13463.1 gi|345006761|ref|YP_004809614.1| - 8e-10 38.9 0.1 8.6e-05 22.7 0.0 2.4 2 0 0 2 2 2 2 Winged helix DNA-binding domain MarR PF01047.17 gi|345006761|ref|YP_004809614.1| - 3.1e-09 36.4 0.1 7e-07 28.8 0.1 2.4 2 0 0 2 2 2 1 MarR family Fe_dep_repress PF01325.14 gi|345006761|ref|YP_004809614.1| - 3.4e-09 36.5 0.0 1.6e-05 24.7 0.0 2.3 2 0 0 2 2 2 2 Iron dependent repressor, N-terminal DNA binding domain Rrf2 PF02082.15 gi|345006761|ref|YP_004809614.1| - 6.1e-07 29.4 0.1 0.0011 19.0 0.0 2.3 2 0 0 2 2 2 2 Transcriptional regulator LexA_DNA_bind PF01726.11 gi|345006761|ref|YP_004809614.1| - 1.2e-06 27.9 0.0 0.013 15.0 0.0 2.7 2 0 0 2 2 2 2 LexA DNA binding domain HTH_11 PF08279.7 gi|345006761|ref|YP_004809614.1| - 1.8e-05 24.2 0.0 3.8e-05 23.2 0.0 1.5 1 0 0 1 1 1 1 HTH domain PadR PF03551.9 gi|345006761|ref|YP_004809614.1| - 2.6e-05 23.8 0.5 0.0063 16.2 0.1 3.4 3 1 0 3 3 3 1 Transcriptional regulator PadR-like family HTH_IclR PF09339.5 gi|345006761|ref|YP_004809614.1| - 3.7e-05 23.2 1.4 0.09 12.3 0.1 2.5 2 0 0 2 2 2 2 IclR helix-turn-helix domain GntR PF00392.16 gi|345006761|ref|YP_004809614.1| - 9e-05 21.8 1.0 0.47 9.9 0.0 2.6 3 0 0 3 3 2 2 Bacterial regulatory proteins, gntR family DUF2250 PF10007.4 gi|345006761|ref|YP_004809614.1| - 0.00014 21.6 0.0 0.053 13.4 0.0 2.3 2 0 0 2 2 2 1 Uncharacterized protein conserved in archaea (DUF2250) HTH_Crp_2 PF13545.1 gi|345006761|ref|YP_004809614.1| - 0.00028 20.6 0.1 0.0028 17.3 0.0 2.2 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain HTH_10 PF04967.7 gi|345006761|ref|YP_004809614.1| - 0.00062 19.2 0.0 0.0021 17.6 0.0 1.9 2 0 0 2 2 1 1 HTH DNA binding domain HTH_34 PF13601.1 gi|345006761|ref|YP_004809614.1| - 0.00087 19.2 0.0 0.0056 16.6 0.0 2.1 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_28 PF13518.1 gi|345006761|ref|YP_004809614.1| - 0.001 18.9 0.3 0.019 14.9 0.1 2.4 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_CodY PF08222.6 gi|345006761|ref|YP_004809614.1| - 0.0011 18.2 0.0 0.0063 15.8 0.0 2.2 2 0 0 2 2 2 1 CodY helix-turn-helix domain DUF4423 PF14394.1 gi|345006761|ref|YP_004809614.1| - 0.0013 18.3 0.0 0.93 9.0 0.0 2.2 2 0 0 2 2 2 2 Domain of unknown function (DUF4423) HTH_23 PF13384.1 gi|345006761|ref|YP_004809614.1| - 0.0025 17.3 0.1 0.0084 15.7 0.0 1.9 2 0 0 2 2 1 1 Homeodomain-like domain ArsR PF09824.4 gi|345006761|ref|YP_004809614.1| - 0.006 15.9 0.0 0.016 14.5 0.0 1.6 2 0 0 2 2 1 1 ArsR transcriptional regulator HTH_DeoR PF08220.7 gi|345006761|ref|YP_004809614.1| - 0.0084 15.6 0.0 0.021 14.3 0.0 1.6 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain FeoC PF09012.5 gi|345006761|ref|YP_004809614.1| - 0.01 15.5 0.0 0.44 10.2 0.0 2.3 2 0 0 2 2 2 0 FeoC like transcriptional regulator DUF387 PF04079.11 gi|345006761|ref|YP_004809614.1| - 0.018 14.4 0.0 1.8 7.9 0.0 2.2 2 0 0 2 2 2 0 Putative transcriptional regulators (Ypuh-like) Sulfolobus_pRN PF05584.6 gi|345006761|ref|YP_004809614.1| - 0.02 14.8 0.1 0.075 13.0 0.0 1.9 2 0 0 2 2 2 0 Sulfolobus plasmid regulatory protein HTH_36 PF13730.1 gi|345006761|ref|YP_004809614.1| - 0.02 14.9 0.0 0.047 13.8 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_29 PF13551.1 gi|345006761|ref|YP_004809614.1| - 0.022 14.9 0.7 0.38 10.9 0.1 2.3 2 0 0 2 2 2 0 Winged helix-turn helix HTH_Tnp_ISL3 PF13542.1 gi|345006761|ref|YP_004809614.1| - 0.025 13.7 0.1 1.3 8.3 0.0 2.4 2 0 0 2 2 2 0 Helix-turn-helix domain of transposase family ISL3 DDRGK PF09756.4 gi|345006761|ref|YP_004809614.1| - 0.03 13.7 0.0 0.053 12.9 0.0 1.3 1 0 0 1 1 1 0 DDRGK domain HxlR PF01638.12 gi|345006761|ref|YP_004809614.1| - 0.036 13.7 0.0 0.081 12.5 0.0 1.6 1 0 0 1 1 1 0 HxlR-like helix-turn-helix HTH_AsnC-type PF13404.1 gi|345006761|ref|YP_004809614.1| - 0.044 13.3 2.1 0.41 10.2 0.1 3.3 3 1 0 3 3 3 0 AsnC-type helix-turn-helix domain MerR PF00376.18 gi|345006761|ref|YP_004809614.1| - 0.05 13.1 0.1 2.7 7.6 0.0 3.0 2 1 0 2 2 2 0 MerR family regulatory protein DUF2513 PF10711.4 gi|345006761|ref|YP_004809614.1| - 0.063 13.3 0.0 0.16 12.0 0.0 1.7 2 0 0 2 2 1 0 Hypothetical protein (DUF2513) B-block_TFIIIC PF04182.7 gi|345006761|ref|YP_004809614.1| - 0.1 12.4 0.0 0.28 11.0 0.0 1.7 2 0 0 2 2 1 0 B-block binding subunit of TFIIIC FaeA PF04703.7 gi|345006761|ref|YP_004809614.1| - 0.11 12.6 0.0 0.23 11.6 0.0 1.5 1 0 0 1 1 1 0 FaeA-like protein TFIIE_alpha PF02002.12 gi|345006761|ref|YP_004809614.1| - 0.12 11.9 0.0 0.45 10.0 0.0 1.9 2 0 0 2 2 2 0 TFIIE alpha subunit Sigma70_r4_2 PF08281.7 gi|345006761|ref|YP_004809614.1| - 0.13 11.7 0.2 0.37 10.2 0.0 2.0 2 0 0 2 2 2 0 Sigma-70, region 4 DUF1405 PF07187.6 gi|345006762|ref|YP_004809615.1| - 2.1e-37 128.4 11.9 2.1e-37 128.4 8.2 1.5 2 0 0 2 2 2 1 Protein of unknown function (DUF1405) Peptidase_S9 PF00326.16 gi|345006763|ref|YP_004809616.1| - 1.7e-47 161.3 0.3 2.6e-47 160.7 0.2 1.3 1 0 0 1 1 1 1 Prolyl oligopeptidase family DLH PF01738.13 gi|345006763|ref|YP_004809616.1| - 9e-15 54.5 0.7 2.2e-14 53.2 0.5 1.6 1 1 0 1 1 1 1 Dienelactone hydrolase family Abhydrolase_5 PF12695.2 gi|345006763|ref|YP_004809616.1| - 4.3e-14 52.4 0.1 1e-13 51.2 0.1 1.6 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_6 PF12697.2 gi|345006763|ref|YP_004809616.1| - 5.5e-06 26.4 10.8 6.9e-06 26.0 5.0 2.5 2 1 0 2 2 2 1 Alpha/beta hydrolase family Abhydrolase_3 PF07859.8 gi|345006763|ref|YP_004809616.1| - 7.1e-06 25.7 0.5 2.7e-05 23.8 0.4 1.9 1 1 0 1 1 1 1 alpha/beta hydrolase fold PD40 PF07676.7 gi|345006763|ref|YP_004809616.1| - 0.002 17.7 0.6 2.9 7.6 0.0 3.9 4 0 0 4 4 4 1 WD40-like Beta Propeller Repeat Abhydrolase_2 PF02230.11 gi|345006763|ref|YP_004809616.1| - 0.0038 16.7 0.0 0.012 15.0 0.0 1.8 2 0 0 2 2 2 1 Phospholipase/Carboxylesterase AXE1 PF05448.7 gi|345006763|ref|YP_004809616.1| - 0.0085 14.6 1.6 0.34 9.3 1.1 2.1 1 1 0 1 1 1 1 Acetyl xylan esterase (AXE1) DPPIV_N PF00930.16 gi|345006763|ref|YP_004809616.1| - 0.015 13.8 0.0 3 6.3 0.0 3.4 2 2 0 3 3 3 0 Dipeptidyl peptidase IV (DPP IV) N-terminal region Abhydrolase_1 PF00561.15 gi|345006763|ref|YP_004809616.1| - 0.041 13.4 0.0 0.12 11.9 0.0 1.9 1 0 0 1 1 1 0 alpha/beta hydrolase fold FSH1 PF03959.8 gi|345006763|ref|YP_004809616.1| - 0.062 12.7 0.9 0.16 11.4 0.1 2.1 2 1 0 2 2 2 0 Serine hydrolase (FSH1) BAAT_C PF08840.6 gi|345006763|ref|YP_004809616.1| - 0.096 12.3 0.0 0.19 11.4 0.0 1.4 1 0 0 1 1 1 0 BAAT / Acyl-CoA thioester hydrolase C terminal LIP PF03583.9 gi|345006763|ref|YP_004809616.1| - 0.12 11.5 1.8 1.9 7.6 0.0 2.2 1 1 0 2 2 2 0 Secretory lipase DUF2628 PF10947.3 gi|345006764|ref|YP_004809617.1| - 2.1 8.1 6.9 2.4 7.9 4.8 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2628) Amino_oxidase PF01593.19 gi|345006765|ref|YP_004809618.1| - 4.7e-62 210.5 1.4 6.1e-62 210.1 0.9 1.1 1 0 0 1 1 1 1 Flavin containing amine oxidoreductase NAD_binding_8 PF13450.1 gi|345006765|ref|YP_004809618.1| - 5.3e-15 55.1 1.2 1.3e-14 53.9 0.8 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain DAO PF01266.19 gi|345006765|ref|YP_004809618.1| - 2.1e-11 43.3 5.3 6.7e-10 38.4 3.7 2.5 1 1 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_3 PF13738.1 gi|345006765|ref|YP_004809618.1| - 1.6e-08 34.8 0.1 2.7e-05 24.3 0.1 2.2 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.19 gi|345006765|ref|YP_004809618.1| - 1.3e-06 27.5 1.7 2.2e-06 26.7 1.2 1.3 1 0 0 1 1 1 1 FAD binding domain Pyr_redox PF00070.22 gi|345006765|ref|YP_004809618.1| - 1.5e-06 28.5 1.3 0.0006 20.1 0.2 3.3 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.2 gi|345006765|ref|YP_004809618.1| - 1.2e-05 24.6 3.3 2e-05 23.8 2.2 1.4 1 1 0 1 1 1 1 FAD dependent oxidoreductase HI0933_like PF03486.9 gi|345006765|ref|YP_004809618.1| - 1.5e-05 23.6 0.7 0.00087 17.8 0.3 2.1 2 0 0 2 2 2 1 HI0933-like protein Pyr_redox_2 PF07992.9 gi|345006765|ref|YP_004809618.1| - 0.00027 20.8 0.3 0.00045 20.1 0.1 1.6 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.14 gi|345006765|ref|YP_004809618.1| - 0.00031 19.8 0.3 0.00031 19.8 0.2 1.9 2 0 0 2 2 2 1 FAD binding domain Thi4 PF01946.12 gi|345006765|ref|YP_004809618.1| - 0.00082 18.5 0.1 0.0014 17.7 0.1 1.3 1 0 0 1 1 1 1 Thi4 family GIDA PF01134.17 gi|345006765|ref|YP_004809618.1| - 0.012 14.5 0.7 0.018 13.9 0.5 1.2 1 0 0 1 1 1 0 Glucose inhibited division protein A IlvN PF07991.7 gi|345006765|ref|YP_004809618.1| - 0.018 14.3 0.2 0.19 11.0 0.0 2.3 2 0 0 2 2 2 0 Acetohydroxy acid isomeroreductase, catalytic domain AlaDh_PNT_C PF01262.16 gi|345006765|ref|YP_004809618.1| - 0.019 14.5 0.2 0.033 13.7 0.1 1.3 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Lycopene_cycl PF05834.7 gi|345006765|ref|YP_004809618.1| - 0.03 13.2 1.0 0.15 10.9 0.3 2.0 2 0 0 2 2 2 0 Lycopene cyclase protein NAD_binding_9 PF13454.1 gi|345006765|ref|YP_004809618.1| - 0.68 9.6 4.3 18 5.1 0.1 3.2 3 0 0 3 3 3 0 FAD-NAD(P)-binding Metalloenzyme PF01676.13 gi|345006766|ref|YP_004809619.1| - 5.1e-72 242.2 0.0 5.9e-72 242.0 0.0 1.0 1 0 0 1 1 1 1 Metalloenzyme superfamily iPGM_N PF06415.8 gi|345006766|ref|YP_004809619.1| - 2.3e-70 236.4 0.0 3e-70 236.0 0.0 1.1 1 0 0 1 1 1 1 BPG-independent PGAM N-terminus (iPGM_N) Phosphodiest PF01663.17 gi|345006766|ref|YP_004809619.1| - 2.1e-10 40.5 0.1 9.8e-10 38.2 0.0 1.9 2 0 0 2 2 2 1 Type I phosphodiesterase / nucleotide pyrophosphatase Sulfatase PF00884.18 gi|345006766|ref|YP_004809619.1| - 0.0029 16.8 0.0 0.0072 15.5 0.0 1.8 1 1 0 1 1 1 1 Sulfatase PglZ PF08665.7 gi|345006766|ref|YP_004809619.1| - 0.017 14.8 0.1 0.03 13.9 0.1 1.3 1 0 0 1 1 1 0 PglZ domain ArsA_ATPase PF02374.10 gi|345006768|ref|YP_004809621.1| - 3.2e-78 262.8 0.0 7.2e-78 261.7 0.0 1.5 1 1 0 1 1 1 1 Anion-transporting ATPase CbiA PF01656.18 gi|345006768|ref|YP_004809621.1| - 6.1e-12 45.3 0.1 3.2e-11 43.0 0.0 2.0 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|345006768|ref|YP_004809621.1| - 2.9e-06 27.2 0.1 0.0055 16.6 0.0 2.3 2 0 0 2 2 2 2 AAA domain SRP54 PF00448.17 gi|345006768|ref|YP_004809621.1| - 0.0014 18.1 0.1 0.27 10.6 0.1 2.3 2 0 0 2 2 2 2 SRP54-type protein, GTPase domain AAA_25 PF13481.1 gi|345006768|ref|YP_004809621.1| - 0.0033 16.8 1.7 0.062 12.6 0.1 2.9 3 0 0 3 3 3 1 AAA domain Fer4_NifH PF00142.13 gi|345006768|ref|YP_004809621.1| - 0.0051 16.0 0.1 0.0092 15.1 0.1 1.3 1 0 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family YhjQ PF06564.7 gi|345006768|ref|YP_004809621.1| - 0.048 13.0 0.0 0.081 12.2 0.0 1.3 1 0 0 1 1 1 0 YhjQ protein PhoH PF02562.11 gi|345006768|ref|YP_004809621.1| - 0.049 12.8 0.0 0.086 12.0 0.0 1.3 1 0 0 1 1 1 0 PhoH-like protein AAA_10 PF12846.2 gi|345006768|ref|YP_004809621.1| - 0.077 12.4 0.0 0.25 10.7 0.0 1.7 2 0 0 2 2 2 0 AAA-like domain zinc-ribbons_6 PF07191.7 gi|345006769|ref|YP_004809622.1| - 0.31 10.8 7.4 0.47 10.2 4.6 1.7 1 1 0 1 1 1 0 zinc-ribbons adh_short PF00106.20 gi|345006770|ref|YP_004809623.1| - 3.7e-32 111.5 0.0 5.1e-32 111.0 0.0 1.2 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|345006770|ref|YP_004809623.1| - 9.3e-17 61.5 0.0 1.2e-16 61.2 0.0 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.5 gi|345006770|ref|YP_004809623.1| - 3.1e-12 46.5 0.0 4.4e-12 46.0 0.0 1.3 1 0 0 1 1 1 1 KR domain NAD_binding_10 PF13460.1 gi|345006770|ref|YP_004809623.1| - 4.5e-07 30.0 0.1 9.4e-07 29.0 0.1 1.6 1 1 0 1 1 1 1 NADH(P)-binding Epimerase PF01370.16 gi|345006770|ref|YP_004809623.1| - 7.6e-05 22.2 0.0 0.00018 21.0 0.0 1.6 2 0 0 2 2 2 1 NAD dependent epimerase/dehydratase family DUF1776 PF08643.5 gi|345006770|ref|YP_004809623.1| - 0.00036 19.7 0.0 0.00089 18.4 0.0 1.7 1 1 0 1 1 1 1 Fungal family of unknown function (DUF1776) Eno-Rase_NADH_b PF12242.3 gi|345006770|ref|YP_004809623.1| - 0.00064 19.4 0.0 0.0014 18.3 0.0 1.6 1 0 0 1 1 1 1 NAD(P)H binding domain of trans-2-enoyl-CoA reductase RmlD_sub_bind PF04321.12 gi|345006770|ref|YP_004809623.1| - 0.00078 18.4 0.0 0.002 17.0 0.0 1.6 1 1 0 1 1 1 1 RmlD substrate binding domain ADH_zinc_N PF00107.21 gi|345006770|ref|YP_004809623.1| - 0.061 12.8 0.0 0.26 10.8 0.0 1.9 2 0 0 2 2 2 0 Zinc-binding dehydrogenase NmrA PF05368.8 gi|345006770|ref|YP_004809623.1| - 0.084 12.1 0.0 0.12 11.5 0.0 1.2 1 0 0 1 1 1 0 NmrA-like family Endonuclease_5 PF04493.9 gi|345006771|ref|YP_004809624.1| - 3.4e-45 153.9 0.0 4.8e-45 153.4 0.0 1.2 1 0 0 1 1 1 1 Endonuclease V Rhomboid PF01694.17 gi|345006772|ref|YP_004809625.1| - 1.8e-27 96.1 16.4 1.8e-27 96.1 11.4 1.6 2 0 0 2 2 2 1 Rhomboid family zf-AN1 PF01428.11 gi|345006772|ref|YP_004809625.1| - 9.9e-15 54.1 5.7 1.4e-14 53.7 4.0 1.2 1 0 0 1 1 1 1 AN1-like Zinc finger DUF1751 PF08551.5 gi|345006772|ref|YP_004809625.1| - 0.00079 19.7 0.1 0.0019 18.4 0.1 1.7 1 0 0 1 1 1 1 Eukaryotic integral membrane protein (DUF1751) FYVE PF01363.16 gi|345006772|ref|YP_004809625.1| - 0.051 13.4 0.9 0.076 12.9 0.6 1.3 1 0 0 1 1 1 0 FYVE zinc finger zf-HIT PF04438.11 gi|345006772|ref|YP_004809625.1| - 0.29 10.8 5.0 0.46 10.1 3.4 1.3 1 0 0 1 1 1 0 HIT zinc finger zf-C2H2_6 PF13912.1 gi|345006772|ref|YP_004809625.1| - 2.7 8.0 7.2 1.8 8.6 1.9 2.3 2 0 0 2 2 2 0 C2H2-type zinc finger Peptidase_S8 PF00082.17 gi|345006773|ref|YP_004809626.1| - 3.5e-47 160.8 13.3 3.5e-47 160.8 9.2 2.0 3 0 0 3 3 3 1 Subtilase family Inhibitor_I53 PF11714.3 gi|345006773|ref|YP_004809626.1| - 2.4 8.1 8.3 3.4 7.7 0.1 3.6 2 1 1 3 3 3 0 Thrombin inhibitor Madanin NYN PF01936.13 gi|345006774|ref|YP_004809627.1| - 2.5e-18 66.7 0.0 2.9e-18 66.5 0.0 1.0 1 0 0 1 1 1 1 NYN domain PucR PF07905.6 gi|345006774|ref|YP_004809627.1| - 0.022 14.3 0.1 0.056 13.0 0.0 1.6 1 1 1 2 2 2 0 Purine catabolism regulatory protein-like family PALP PF00291.20 gi|345006774|ref|YP_004809627.1| - 0.085 12.0 0.2 0.094 11.9 0.2 1.1 1 0 0 1 1 1 0 Pyridoxal-phosphate dependent enzyme AP_endonuc_2 PF01261.19 gi|345006774|ref|YP_004809627.1| - 0.097 11.9 0.2 0.3 10.3 0.1 1.7 1 1 0 1 1 1 0 Xylose isomerase-like TIM barrel HTH_31 PF13560.1 gi|345006775|ref|YP_004809628.1| - 2.4e-09 37.2 0.0 7.1e-09 35.7 0.0 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_3 PF01381.17 gi|345006775|ref|YP_004809628.1| - 3.3e-07 30.0 0.0 7.2e-07 28.9 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.2 gi|345006775|ref|YP_004809628.1| - 1.5e-06 28.1 0.0 3.3e-06 27.0 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Crp_2 PF13545.1 gi|345006775|ref|YP_004809628.1| - 0.08 12.7 0.0 0.14 12.0 0.0 1.4 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain Phage_CI_repr PF07022.8 gi|345006775|ref|YP_004809628.1| - 0.093 12.8 0.0 0.11 12.6 0.0 1.4 1 1 0 1 1 1 0 Bacteriophage CI repressor helix-turn-helix domain zinc_ribbon_5 PF13719.1 gi|345006776|ref|YP_004809629.1| - 0.0031 17.0 1.8 0.01 15.4 0.7 2.2 2 0 0 2 2 2 1 zinc-ribbon domain DUF2387 PF09526.5 gi|345006776|ref|YP_004809629.1| - 0.0032 17.3 2.5 0.004 17.0 0.7 2.0 1 1 1 2 2 2 1 Probable metal-binding protein (DUF2387) Lar_restr_allev PF14354.1 gi|345006776|ref|YP_004809629.1| - 0.015 15.5 0.8 0.037 14.3 0.3 2.0 2 0 0 2 2 2 0 Restriction alleviation protein Lar zinc_ribbon_4 PF13717.1 gi|345006776|ref|YP_004809629.1| - 0.019 14.6 3.3 0.057 13.1 1.6 2.3 2 1 0 2 2 2 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|345006776|ref|YP_004809629.1| - 0.027 13.8 2.3 0.053 12.8 1.0 2.1 2 0 0 2 2 2 0 TFIIB zinc-binding MUG113 PF13455.1 gi|345006776|ref|YP_004809629.1| - 0.036 14.5 0.0 0.084 13.3 0.0 1.6 1 0 0 1 1 1 0 Meiotically up-regulated gene 113 zf-ZPR1 PF03367.8 gi|345006776|ref|YP_004809629.1| - 0.12 11.5 5.8 0.24 10.5 4.0 1.6 1 1 0 1 1 1 0 ZPR1 zinc-finger domain DNA_RNApol_7kD PF03604.8 gi|345006776|ref|YP_004809629.1| - 0.31 10.5 1.7 0.33 10.4 0.1 1.8 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit YusW PF14039.1 gi|345006776|ref|YP_004809629.1| - 0.34 11.1 2.7 0.24 11.7 0.4 1.7 2 0 0 2 2 2 0 YusW-like protein MarR_2 PF12802.2 gi|345006777|ref|YP_004809630.1| - 0.0018 17.9 0.7 0.0052 16.4 0.5 1.8 1 1 0 1 1 1 1 MarR family HemN_C PF06969.11 gi|345006777|ref|YP_004809630.1| - 0.027 14.5 0.2 0.055 13.5 0.2 1.7 1 1 0 1 1 1 0 HemN C-terminal domain LexA_DNA_bind PF01726.11 gi|345006777|ref|YP_004809630.1| - 0.057 12.9 0.1 0.087 12.3 0.1 1.4 1 0 0 1 1 1 0 LexA DNA binding domain HTH_24 PF13412.1 gi|345006777|ref|YP_004809630.1| - 0.077 12.4 0.3 0.14 11.5 0.2 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding DUF2250 PF10007.4 gi|345006777|ref|YP_004809630.1| - 0.094 12.6 0.0 0.13 12.1 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) DUF2688 PF10892.3 gi|345006777|ref|YP_004809630.1| - 0.11 12.2 0.1 0.21 11.2 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2688) Aminotran_1_2 PF00155.16 gi|345006779|ref|YP_004809632.1| - 1.3e-55 188.8 0.0 1.6e-55 188.5 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.14 gi|345006779|ref|YP_004809632.1| - 1.6e-10 40.3 0.0 3e-10 39.3 0.0 1.4 1 1 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.16 gi|345006779|ref|YP_004809632.1| - 2.3e-08 33.5 0.0 3.3e-08 33.0 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase Cys_Met_Meta_PP PF01053.15 gi|345006779|ref|YP_004809632.1| - 0.0002 19.7 0.0 0.00027 19.3 0.0 1.1 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme DegT_DnrJ_EryC1 PF01041.12 gi|345006779|ref|YP_004809632.1| - 0.00031 19.9 0.0 0.0005 19.2 0.0 1.3 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_MocR PF12897.2 gi|345006779|ref|YP_004809632.1| - 0.00055 18.5 0.4 0.1 11.1 0.0 2.2 2 0 0 2 2 2 2 Alanine-glyoxylate amino-transferase SLA_LP_auto_ag PF05889.8 gi|345006779|ref|YP_004809632.1| - 0.12 10.7 0.0 0.18 10.2 0.0 1.2 1 0 0 1 1 1 0 Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen) Alliinase_C PF04864.8 gi|345006779|ref|YP_004809632.1| - 0.17 10.5 0.0 0.24 9.9 0.0 1.2 1 0 0 1 1 1 0 Allinase Phosphodiest PF01663.17 gi|345006780|ref|YP_004809633.1| - 7.5e-57 193.3 0.1 8.5e-57 193.1 0.1 1.0 1 0 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase DUF2063 PF09836.4 gi|345006780|ref|YP_004809633.1| - 0.0099 15.8 0.1 0.028 14.4 0.0 1.7 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2063) Sulfatase PF00884.18 gi|345006780|ref|YP_004809633.1| - 0.075 12.2 1.6 0.15 11.1 0.3 2.1 3 0 0 3 3 3 0 Sulfatase OrfB_Zn_ribbon PF07282.6 gi|345006781|ref|YP_004809634.1| - 0.033 13.8 1.8 0.098 12.3 1.3 1.7 1 1 0 1 1 1 0 Putative transposase DNA-binding domain zf-ribbon_3 PF13248.1 gi|345006781|ref|YP_004809634.1| - 0.25 10.6 4.5 0.36 10.1 3.1 1.3 1 0 0 1 1 1 0 zinc-ribbon domain DUF35_N PF12172.3 gi|345006781|ref|YP_004809634.1| - 0.31 11.0 3.9 0.44 10.5 2.7 1.3 1 0 0 1 1 1 0 Rubredoxin-like zinc ribbon domain (DUF35_N) RecR PF02132.10 gi|345006781|ref|YP_004809634.1| - 0.57 9.6 2.4 1.1 8.7 1.7 1.4 1 1 0 1 1 1 0 RecR protein UPF0547 PF10571.4 gi|345006781|ref|YP_004809634.1| - 0.64 9.7 5.3 4 7.2 3.6 2.0 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 zinc_ribbon_2 PF13240.1 gi|345006781|ref|YP_004809634.1| - 0.92 9.0 4.8 1.5 8.4 3.3 1.4 1 0 0 1 1 1 0 zinc-ribbon domain Rubredoxin PF00301.15 gi|345006781|ref|YP_004809634.1| - 2.3 8.1 6.4 14 5.6 1.1 2.3 2 1 0 2 2 2 0 Rubredoxin Zn-ribbon_8 PF09723.5 gi|345006781|ref|YP_004809634.1| - 3.9 7.5 5.8 1.2 9.1 0.7 2.1 1 1 1 2 2 2 0 Zinc ribbon domain zf-NADH-PPase PF09297.6 gi|345006781|ref|YP_004809634.1| - 4.4 6.8 7.1 2.9 7.4 0.9 2.7 2 1 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain YhfH PF14149.1 gi|345006781|ref|YP_004809634.1| - 5.3 6.9 7.6 60 3.5 5.0 2.2 1 1 1 2 2 2 0 YhfH-like protein UvrD-helicase PF00580.16 gi|345006782|ref|YP_004809635.1| - 1.6e-26 93.3 0.0 1.5e-25 90.1 0.0 2.2 1 1 0 1 1 1 1 UvrD/REP helicase N-terminal domain UvrD_C PF13361.1 gi|345006782|ref|YP_004809635.1| - 1.7e-15 57.3 0.5 6.1e-09 35.7 0.0 2.7 3 0 0 3 3 3 2 UvrD-like helicase C-terminal domain AAA_19 PF13245.1 gi|345006782|ref|YP_004809635.1| - 1.8e-11 43.6 0.2 5.6e-11 42.0 0.1 1.8 1 0 0 1 1 1 1 Part of AAA domain UvrD_C_2 PF13538.1 gi|345006782|ref|YP_004809635.1| - 3.1e-07 30.4 1.0 9.4e-06 25.7 0.2 3.1 2 1 0 2 2 2 1 UvrD-like helicase C-terminal domain Viral_helicase1 PF01443.13 gi|345006782|ref|YP_004809635.1| - 7.5e-06 25.6 0.0 1.5 8.2 0.0 3.8 3 1 0 3 3 3 3 Viral (Superfamily 1) RNA helicase AAA_11 PF13086.1 gi|345006782|ref|YP_004809635.1| - 6.8e-05 22.5 0.0 0.0016 18.0 0.0 2.7 3 0 0 3 3 3 1 AAA domain AAA_30 PF13604.1 gi|345006782|ref|YP_004809635.1| - 0.00021 20.9 0.3 0.014 14.9 0.0 3.0 3 0 0 3 3 3 1 AAA domain Herpes_ori_bp PF02399.10 gi|345006782|ref|YP_004809635.1| - 0.00038 18.5 0.0 0.00056 18.0 0.0 1.1 1 0 0 1 1 1 1 Origin of replication binding protein AAA_22 PF13401.1 gi|345006782|ref|YP_004809635.1| - 0.00064 19.8 0.1 1.1 9.4 0.0 3.0 3 0 0 3 3 3 2 AAA domain AAA_25 PF13481.1 gi|345006782|ref|YP_004809635.1| - 0.013 14.9 0.0 1.6 8.0 0.0 2.8 2 0 0 2 2 2 0 AAA domain AAA_12 PF13087.1 gi|345006782|ref|YP_004809635.1| - 0.025 13.9 0.0 0.26 10.6 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_14 PF13173.1 gi|345006782|ref|YP_004809635.1| - 0.026 14.4 0.0 2.1 8.2 0.0 2.6 2 0 0 2 2 2 0 AAA domain Peptidase_M24 PF00557.19 gi|345006783|ref|YP_004809636.1| - 2.7e-37 128.3 0.8 3.9e-37 127.8 0.5 1.2 1 0 0 1 1 1 1 Metallopeptidase family M24 ExoD PF06055.7 gi|345006784|ref|YP_004809637.1| - 0.00012 21.2 0.2 0.00013 21.1 0.2 1.1 1 0 0 1 1 1 1 Exopolysaccharide synthesis, ExoD Lum_binding PF00677.12 gi|345006785|ref|YP_004809638.1| - 2e-40 136.5 0.1 6.6e-19 67.6 0.0 2.0 2 0 0 2 2 2 2 Lumazine binding domain TOBE_2 PF08402.5 gi|345006785|ref|YP_004809638.1| - 0.047 13.6 0.1 0.73 9.8 0.0 2.7 1 1 1 2 2 2 0 TOBE domain TrmB PF01978.14 gi|345006786|ref|YP_004809639.1| - 0.0017 18.0 0.0 0.0021 17.7 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.17 gi|345006786|ref|YP_004809639.1| - 0.0066 16.1 0.0 0.0099 15.5 0.0 1.2 1 0 0 1 1 1 1 MarR family GntR PF00392.16 gi|345006786|ref|YP_004809639.1| - 0.0079 15.6 0.1 0.012 15.0 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family TFIIE_alpha PF02002.12 gi|345006786|ref|YP_004809639.1| - 0.014 14.8 0.0 0.017 14.5 0.0 1.1 1 0 0 1 1 1 0 TFIIE alpha subunit HTH_24 PF13412.1 gi|345006786|ref|YP_004809639.1| - 0.02 14.3 0.0 0.033 13.5 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|345006786|ref|YP_004809639.1| - 0.038 13.6 0.0 0.049 13.3 0.0 1.2 1 0 0 1 1 1 0 MarR family HTH_11 PF08279.7 gi|345006786|ref|YP_004809639.1| - 0.11 12.1 0.0 0.17 11.5 0.0 1.3 1 0 0 1 1 1 0 HTH domain ABC2_membrane_5 PF13346.1 gi|345006787|ref|YP_004809640.1| - 0.027 13.7 2.5 0.032 13.5 1.7 1.1 1 0 0 1 1 1 0 ABC-2 family transporter protein ABC_tran PF00005.22 gi|345006788|ref|YP_004809641.1| - 4.5e-39 133.8 0.0 5.3e-20 72.1 0.0 2.7 2 1 0 2 2 2 2 ABC transporter AAA_21 PF13304.1 gi|345006788|ref|YP_004809641.1| - 4.7e-15 56.3 0.9 6.5e-06 26.3 0.0 4.2 2 2 1 3 3 3 3 AAA domain SMC_N PF02463.14 gi|345006788|ref|YP_004809641.1| - 8.8e-14 51.2 5.0 0.0005 19.3 0.0 4.3 4 0 0 4 4 4 3 RecF/RecN/SMC N terminal domain RLI PF04068.10 gi|345006788|ref|YP_004809641.1| - 1.4e-12 46.9 1.0 2.7e-12 46.0 0.7 1.5 1 0 0 1 1 1 1 Possible Fer4-like domain in RNase L inhibitor, RLI AAA_23 PF13476.1 gi|345006788|ref|YP_004809641.1| - 5.6e-08 33.3 0.0 0.00028 21.3 0.0 2.3 2 0 0 2 2 2 2 AAA domain AAA_29 PF13555.1 gi|345006788|ref|YP_004809641.1| - 1.2e-06 27.9 0.4 0.016 14.7 0.0 2.4 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_25 PF13481.1 gi|345006788|ref|YP_004809641.1| - 3e-06 26.7 1.1 0.06 12.7 0.0 3.5 4 0 0 4 4 4 2 AAA domain AAA_17 PF13207.1 gi|345006788|ref|YP_004809641.1| - 6.6e-06 26.9 0.2 0.038 14.8 0.0 2.9 2 2 0 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|345006788|ref|YP_004809641.1| - 7.6e-06 26.0 1.1 0.035 14.0 0.0 2.6 2 2 0 2 2 2 2 AAA ATPase domain AAA_22 PF13401.1 gi|345006788|ref|YP_004809641.1| - 3.1e-05 24.1 0.6 0.041 14.0 0.0 3.3 2 2 0 2 2 2 1 AAA domain AAA PF00004.24 gi|345006788|ref|YP_004809641.1| - 0.00012 22.2 0.0 0.35 11.0 0.0 2.6 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) RNA_helicase PF00910.17 gi|345006788|ref|YP_004809641.1| - 0.00013 22.1 0.0 0.91 9.7 0.0 2.6 2 0 0 2 2 2 2 RNA helicase DUF258 PF03193.11 gi|345006788|ref|YP_004809641.1| - 0.00025 20.2 0.0 0.69 9.0 0.0 2.3 2 0 0 2 2 2 2 Protein of unknown function, DUF258 Fer4 PF00037.22 gi|345006788|ref|YP_004809641.1| - 0.00025 20.5 1.3 0.00025 20.5 0.9 2.7 4 0 0 4 4 3 1 4Fe-4S binding domain AAA_14 PF13173.1 gi|345006788|ref|YP_004809641.1| - 0.00046 20.0 0.1 2.8 7.8 0.0 3.5 2 2 2 4 4 4 2 AAA domain NACHT PF05729.7 gi|345006788|ref|YP_004809641.1| - 0.00061 19.4 0.0 0.2 11.3 0.0 2.4 2 0 0 2 2 2 1 NACHT domain AAA_33 PF13671.1 gi|345006788|ref|YP_004809641.1| - 0.001 18.9 0.1 0.73 9.7 0.1 2.7 2 1 0 2 2 2 1 AAA domain Fer4_6 PF12837.2 gi|345006788|ref|YP_004809641.1| - 0.0032 17.2 1.7 0.0032 17.2 1.2 2.4 2 0 0 2 2 2 1 4Fe-4S binding domain SbcCD_C PF13558.1 gi|345006788|ref|YP_004809641.1| - 0.0032 17.3 0.8 0.97 9.4 0.0 3.0 2 2 0 2 2 2 1 Putative exonuclease SbcCD, C subunit NB-ARC PF00931.17 gi|345006788|ref|YP_004809641.1| - 0.0073 15.2 0.1 0.36 9.6 0.3 2.2 2 0 0 2 2 2 1 NB-ARC domain AAA_10 PF12846.2 gi|345006788|ref|YP_004809641.1| - 0.014 14.8 0.1 1.8 7.9 0.0 3.0 3 0 0 3 3 3 0 AAA-like domain Miro PF08477.8 gi|345006788|ref|YP_004809641.1| - 0.025 15.0 0.0 10 6.6 0.0 2.5 2 0 0 2 2 2 0 Miro-like protein ArgK PF03308.11 gi|345006788|ref|YP_004809641.1| - 0.028 13.2 1.7 2.6 6.7 0.1 2.2 2 0 0 2 2 2 0 ArgK protein AAA_5 PF07728.9 gi|345006788|ref|YP_004809641.1| - 0.034 13.8 0.2 4 7.1 0.0 2.7 3 0 0 3 3 2 0 AAA domain (dynein-related subfamily) AAA_24 PF13479.1 gi|345006788|ref|YP_004809641.1| - 0.035 13.6 0.1 1 8.9 0.0 2.3 2 0 0 2 2 2 0 AAA domain Fer4_7 PF12838.2 gi|345006788|ref|YP_004809641.1| - 0.036 14.4 8.6 0.1 12.9 6.0 1.8 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|345006788|ref|YP_004809641.1| - 0.044 13.7 11.8 0.15 12.0 1.4 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain NTPase_1 PF03266.10 gi|345006788|ref|YP_004809641.1| - 0.047 13.3 1.4 11 5.6 0.0 2.9 3 0 0 3 3 3 0 NTPase MobB PF03205.9 gi|345006788|ref|YP_004809641.1| - 0.048 13.3 0.3 0.69 9.6 0.0 2.4 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B MMR_HSR1 PF01926.18 gi|345006788|ref|YP_004809641.1| - 0.072 13.0 0.0 6 6.8 0.0 2.7 2 1 0 2 2 2 0 50S ribosome-binding GTPase AAA_18 PF13238.1 gi|345006788|ref|YP_004809641.1| - 0.1 12.9 0.0 24 5.2 0.0 2.6 2 0 0 2 2 2 0 AAA domain Fer4_10 PF13237.1 gi|345006788|ref|YP_004809641.1| - 0.12 12.2 9.7 0.25 11.1 6.7 1.6 1 0 0 1 1 1 0 4Fe-4S dicluster domain MukB PF04310.7 gi|345006788|ref|YP_004809641.1| - 0.12 11.6 0.2 9.4 5.4 0.0 2.2 2 0 0 2 2 2 0 MukB N-terminal Fer4_21 PF14697.1 gi|345006788|ref|YP_004809641.1| - 1.3 8.9 9.0 2.9 7.8 6.2 1.6 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|345006788|ref|YP_004809641.1| - 1.9 8.8 10.8 4.7 7.5 7.5 1.7 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|345006788|ref|YP_004809641.1| - 4.2 8.1 11.2 0.13 13.0 0.6 2.5 1 1 0 2 2 2 0 4Fe-4S double cluster binding domain Fer4_3 PF12798.2 gi|345006788|ref|YP_004809641.1| - 5.4 7.8 12.9 0.12 13.0 2.1 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain RimK PF08443.6 gi|345006789|ref|YP_004809642.1| - 1e-23 83.8 0.0 1.4e-23 83.4 0.0 1.1 1 0 0 1 1 1 1 RimK-like ATP-grasp domain ATP-grasp_4 PF13535.1 gi|345006789|ref|YP_004809642.1| - 2.5e-11 43.6 0.1 3.5e-11 43.1 0.0 1.1 1 0 0 1 1 1 1 ATP-grasp domain GSH-S_ATP PF02955.11 gi|345006789|ref|YP_004809642.1| - 3.3e-09 36.1 0.0 4.7e-09 35.6 0.0 1.2 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|345006789|ref|YP_004809642.1| - 1.1e-06 27.6 0.0 2.8e-06 26.3 0.0 1.7 1 1 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon ATP-grasp_3 PF02655.9 gi|345006789|ref|YP_004809642.1| - 6.9e-06 26.0 0.0 1.3e-05 25.0 0.0 1.5 1 1 0 1 1 1 1 ATP-grasp domain ATPgrasp_ST PF14397.1 gi|345006789|ref|YP_004809642.1| - 0.00022 20.4 0.0 0.056 12.5 0.0 2.1 2 0 0 2 2 2 2 Sugar-transfer associated ATP-grasp ATPgrasp_TupA PF14305.1 gi|345006789|ref|YP_004809642.1| - 0.16 11.2 0.0 1.2 8.3 0.0 2.0 2 0 0 2 2 2 0 TupA-like ATPgrasp HSP20 PF00011.16 gi|345006790|ref|YP_004809643.1| - 1.9e-08 34.1 0.0 6.8e-05 22.6 0.0 2.1 1 1 1 2 2 2 2 Hsp20/alpha crystallin family PIH1 PF08190.7 gi|345006790|ref|YP_004809643.1| - 0.033 13.6 0.0 0.039 13.4 0.0 1.1 1 0 0 1 1 1 0 pre-RNA processing PIH1/Nop17 PGK PF00162.14 gi|345006791|ref|YP_004809644.1| - 3.5e-102 341.8 0.0 3.9e-102 341.6 0.0 1.0 1 0 0 1 1 1 1 Phosphoglycerate kinase Gp_dh_N PF00044.19 gi|345006792|ref|YP_004809645.1| - 4.5e-19 68.8 0.4 2.1e-18 66.7 0.3 2.1 1 1 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Gp_dh_C PF02800.15 gi|345006792|ref|YP_004809645.1| - 5.5e-18 64.9 0.0 8.3e-18 64.3 0.0 1.3 1 0 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain DapB_N PF01113.15 gi|345006792|ref|YP_004809645.1| - 3.5e-10 39.8 0.8 7.7e-10 38.7 0.4 1.7 1 1 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus NAD_binding_3 PF03447.11 gi|345006792|ref|YP_004809645.1| - 2.9e-05 24.4 0.6 0.00017 21.9 0.1 2.4 3 0 0 3 3 3 1 Homoserine dehydrogenase, NAD binding domain GFO_IDH_MocA PF01408.17 gi|345006792|ref|YP_004809645.1| - 0.00055 20.4 0.4 0.0024 18.3 0.1 2.3 2 1 0 2 2 2 1 Oxidoreductase family, NAD-binding Rossmann fold 2-Hacid_dh_C PF02826.14 gi|345006792|ref|YP_004809645.1| - 0.00099 18.3 0.5 0.01 15.0 0.4 2.2 1 1 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Saccharop_dh PF03435.13 gi|345006792|ref|YP_004809645.1| - 0.0088 15.0 0.3 0.013 14.4 0.2 1.2 1 0 0 1 1 1 1 Saccharopine dehydrogenase Semialdhyde_dh PF01118.19 gi|345006792|ref|YP_004809645.1| - 0.018 15.3 0.1 0.044 14.0 0.1 1.6 1 1 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain TrkA_N PF02254.13 gi|345006792|ref|YP_004809645.1| - 0.031 14.2 0.2 0.086 12.8 0.1 1.8 1 0 0 1 1 1 0 TrkA-N domain 3HCDH_N PF02737.13 gi|345006792|ref|YP_004809645.1| - 0.037 13.6 0.4 0.037 13.6 0.3 1.9 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ThiF PF00899.16 gi|345006792|ref|YP_004809645.1| - 0.11 12.2 0.2 14 5.5 0.0 2.6 2 0 0 2 2 2 0 ThiF family DUF606 PF04657.8 gi|345006793|ref|YP_004809646.1| - 1.6 8.7 14.6 2.8 8.0 9.9 1.5 1 1 0 1 1 1 0 Protein of unknown function, DUF606 DUF2975 PF11188.3 gi|345006794|ref|YP_004809647.1| - 4.3 7.0 10.5 0.15 11.7 2.0 2.0 2 1 0 2 2 2 0 Protein of unknown function (DUF2975) DUF4229 PF14012.1 gi|345006794|ref|YP_004809647.1| - 6.4 6.7 20.0 0.43 10.5 0.2 3.1 1 1 2 3 3 3 0 Protein of unknown function (DUF4229) Peptidase_M29 PF02073.10 gi|345006795|ref|YP_004809648.1| - 4.6e-19 68.4 1.3 7.7e-17 61.1 0.5 2.1 2 0 0 2 2 2 2 Thermophilic metalloprotease (M29) Thi4 PF01946.12 gi|345006797|ref|YP_004809650.1| - 1e-59 201.4 0.1 1.9e-56 190.7 0.1 2.1 1 1 0 1 1 1 1 Thi4 family DAO PF01266.19 gi|345006797|ref|YP_004809650.1| - 5.1e-11 42.0 0.7 4.4e-07 29.1 0.1 2.2 2 0 0 2 2 2 2 FAD dependent oxidoreductase FAD_oxidored PF12831.2 gi|345006797|ref|YP_004809650.1| - 1.5e-10 40.7 0.1 2.1e-10 40.2 0.1 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|345006797|ref|YP_004809650.1| - 2.4e-10 39.8 0.8 1.6e-07 30.5 0.1 2.2 1 1 1 2 2 2 2 FAD binding domain FAD_binding_3 PF01494.14 gi|345006797|ref|YP_004809650.1| - 4.7e-09 35.7 0.0 7.8e-09 35.0 0.0 1.3 1 0 0 1 1 1 1 FAD binding domain HI0933_like PF03486.9 gi|345006797|ref|YP_004809650.1| - 1e-08 34.0 0.1 1.4e-08 33.6 0.1 1.2 1 0 0 1 1 1 1 HI0933-like protein NAD_binding_8 PF13450.1 gi|345006797|ref|YP_004809650.1| - 1.6e-08 34.4 0.1 4e-08 33.1 0.0 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox_2 PF07992.9 gi|345006797|ref|YP_004809650.1| - 3.3e-06 27.1 0.0 4.8e-06 26.5 0.0 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.1 gi|345006797|ref|YP_004809650.1| - 3.9e-06 26.7 0.2 1.7e-05 24.6 0.0 2.0 2 0 0 2 2 2 1 FAD-NAD(P)-binding Trp_halogenase PF04820.9 gi|345006797|ref|YP_004809650.1| - 7.2e-06 24.8 0.1 0.0023 16.6 0.0 2.1 2 0 0 2 2 2 2 Tryptophan halogenase Lycopene_cycl PF05834.7 gi|345006797|ref|YP_004809650.1| - 1.5e-05 24.0 0.4 0.0024 16.8 0.1 2.1 2 0 0 2 2 2 2 Lycopene cyclase protein Pyr_redox_3 PF13738.1 gi|345006797|ref|YP_004809650.1| - 4e-05 23.7 0.1 6.4e-05 23.1 0.1 1.4 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|345006797|ref|YP_004809650.1| - 0.00012 22.3 0.1 0.00033 21.0 0.1 1.7 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_7 PF13241.1 gi|345006797|ref|YP_004809650.1| - 0.0019 18.4 0.0 0.0038 17.4 0.0 1.5 1 1 0 1 1 1 1 Putative NAD(P)-binding Amino_oxidase PF01593.19 gi|345006797|ref|YP_004809650.1| - 0.0043 16.1 0.0 0.0062 15.6 0.0 1.2 1 0 0 1 1 1 1 Flavin containing amine oxidoreductase GIDA PF01134.17 gi|345006797|ref|YP_004809650.1| - 0.009 14.9 0.0 0.01 14.7 0.0 1.2 1 0 0 1 1 1 1 Glucose inhibited division protein A TrkA_N PF02254.13 gi|345006797|ref|YP_004809650.1| - 0.047 13.6 0.1 0.11 12.5 0.0 1.6 1 0 0 1 1 1 0 TrkA-N domain Shikimate_DH PF01488.15 gi|345006797|ref|YP_004809650.1| - 0.048 13.7 0.0 1.3 9.1 0.0 2.2 2 0 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase HMG_CoA_synt_N PF01154.12 gi|345006799|ref|YP_004809652.1| - 2.8e-27 95.3 0.0 4.4e-27 94.7 0.0 1.3 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A synthase N terminal HMG_CoA_synt_C PF08540.5 gi|345006799|ref|YP_004809652.1| - 1.2e-21 77.4 0.0 1.9e-21 76.8 0.0 1.2 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A synthase C terminal Glucosaminidase PF01832.15 gi|345006799|ref|YP_004809652.1| - 0.042 13.9 0.1 0.13 12.3 0.0 1.8 1 0 0 1 1 1 0 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase PKD PF00801.15 gi|345006800|ref|YP_004809653.1| - 3.5e-13 49.0 0.6 3.5e-13 49.0 0.4 5.2 4 1 0 4 4 4 1 PKD domain DUF1628 PF07790.6 gi|345006800|ref|YP_004809653.1| - 2.2e-12 47.5 1.7 2.2e-12 47.5 1.2 5.3 3 1 1 5 5 5 1 Protein of unknown function (DUF1628) CopC PF04234.7 gi|345006800|ref|YP_004809653.1| - 0.0044 17.6 10.9 0.4 11.3 0.2 5.0 5 1 0 5 5 5 1 CopC domain Big_3_2 PF12245.3 gi|345006800|ref|YP_004809653.1| - 0.019 14.5 0.1 0.16 11.5 0.0 2.6 2 0 0 2 2 2 0 Bacterial Ig-like domain (group 3) Big_3_4 PF13754.1 gi|345006800|ref|YP_004809653.1| - 0.15 12.3 0.2 0.15 12.3 0.2 8.6 7 2 2 9 9 9 0 Bacterial Ig-like domain (group 3) DUF2559 PF10832.3 gi|345006800|ref|YP_004809653.1| - 0.21 11.4 0.2 0.58 10.0 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF2559) fn3 PF00041.16 gi|345006800|ref|YP_004809653.1| - 0.26 11.4 16.2 0.44 10.6 0.1 5.0 5 1 0 5 5 5 0 Fibronectin type III domain Filamin PF00630.14 gi|345006800|ref|YP_004809653.1| - 1.3 9.6 6.9 2.6 8.6 0.1 4.2 3 3 0 3 3 3 0 Filamin/ABP280 repeat GPI-anchored PF10342.4 gi|345006800|ref|YP_004809653.1| - 2.5 8.6 35.0 0.38 11.2 1.8 6.5 6 1 1 7 7 7 0 Ser-Thr-rich glycosyl-phosphatidyl-inositol-anchored membrane family Big_1 PF02369.11 gi|345006801|ref|YP_004809654.1| - 5.3e-07 29.4 4.4 5.3e-07 29.4 3.1 3.3 4 1 0 4 4 4 1 Bacterial Ig-like domain (group 1) DUF824 PF05688.6 gi|345006801|ref|YP_004809654.1| - 0.041 13.5 0.5 0.16 11.6 0.4 2.1 1 0 0 1 1 1 0 Salmonella repeat of unknown function (DUF824) DUF1628 PF07790.6 gi|345006801|ref|YP_004809654.1| - 0.5 11.1 3.4 0.94 10.2 0.1 3.0 3 1 0 3 3 3 0 Protein of unknown function (DUF1628) DUF2150 PF09920.4 gi|345006802|ref|YP_004809655.1| - 2.9e-63 212.9 10.5 3.2e-63 212.7 7.3 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2150) DUF945 PF06097.6 gi|345006802|ref|YP_004809655.1| - 0.0017 17.2 0.4 0.0024 16.7 0.3 1.1 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF945) TatD_DNase PF01026.16 gi|345006803|ref|YP_004809656.1| - 1.1e-19 70.6 0.1 6.3e-18 64.8 0.1 2.0 1 1 0 1 1 1 1 TatD related DNase DUF457 PF04307.9 gi|345006804|ref|YP_004809657.1| - 2.4e-14 52.9 0.6 2.9e-14 52.7 0.4 1.2 1 0 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) Acetyltransf_1 PF00583.19 gi|345006805|ref|YP_004809658.1| - 1.5e-12 47.3 0.0 2.4e-12 46.7 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_3 PF13302.1 gi|345006805|ref|YP_004809658.1| - 3e-10 40.4 0.2 6.1e-10 39.4 0.1 1.5 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|345006805|ref|YP_004809658.1| - 3.1e-10 40.1 0.0 4e-10 39.8 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|345006805|ref|YP_004809658.1| - 5.8e-08 32.7 0.0 8e-08 32.3 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|345006805|ref|YP_004809658.1| - 9e-08 32.1 0.0 2.6e-07 30.6 0.0 1.7 1 1 1 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|345006805|ref|YP_004809658.1| - 1.4e-05 25.1 0.0 2.2e-05 24.4 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|345006805|ref|YP_004809658.1| - 0.00031 20.5 0.0 0.00052 19.8 0.0 1.4 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_9 PF13527.1 gi|345006805|ref|YP_004809658.1| - 0.0033 17.2 0.0 0.0066 16.3 0.0 1.6 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|345006805|ref|YP_004809658.1| - 0.0048 16.6 0.0 0.012 15.3 0.0 1.6 2 0 0 2 2 2 1 FR47-like protein Acetyltransf_3 PF13302.1 gi|345006806|ref|YP_004809659.1| - 5e-20 72.1 0.0 6.6e-20 71.7 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Regulator_TrmB PF11495.3 gi|345006807|ref|YP_004809660.1| - 2.1e-53 180.7 0.8 2.1e-53 180.7 0.5 1.4 2 0 0 2 2 2 1 Archaeal transcriptional regulator TrmB TrmB PF01978.14 gi|345006807|ref|YP_004809660.1| - 2.1e-20 72.1 0.0 1.2e-19 69.8 0.0 2.2 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.2 gi|345006807|ref|YP_004809660.1| - 1.3e-05 24.9 0.0 5.4e-05 22.9 0.0 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|345006807|ref|YP_004809660.1| - 0.00019 21.0 0.0 0.00062 19.3 0.0 1.9 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.15 gi|345006807|ref|YP_004809660.1| - 0.00037 20.0 0.0 0.012 15.3 0.0 2.5 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_IclR PF09339.5 gi|345006807|ref|YP_004809660.1| - 0.0011 18.4 0.0 0.003 17.1 0.0 1.7 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_24 PF13412.1 gi|345006807|ref|YP_004809660.1| - 0.018 14.4 0.0 0.3 10.5 0.0 2.4 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding Rrf2 PF02082.15 gi|345006807|ref|YP_004809660.1| - 0.024 14.7 0.0 0.067 13.3 0.0 1.7 1 0 0 1 1 1 0 Transcriptional regulator Pribosyltran PF00156.22 gi|345006808|ref|YP_004809661.1| - 1.3e-24 86.2 0.0 2.1e-24 85.6 0.0 1.3 1 0 0 1 1 1 1 Phosphoribosyl transferase domain HTH_23 PF13384.1 gi|345006808|ref|YP_004809661.1| - 0.0024 17.4 0.0 0.006 16.1 0.0 1.6 1 0 0 1 1 1 1 Homeodomain-like domain HTH_7 PF02796.10 gi|345006808|ref|YP_004809661.1| - 0.0085 15.9 0.0 0.018 14.9 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase HTH_11 PF08279.7 gi|345006808|ref|YP_004809661.1| - 0.014 15.0 0.3 0.057 13.0 0.1 2.0 2 0 0 2 2 2 0 HTH domain PRTase_2 PF15609.1 gi|345006808|ref|YP_004809661.1| - 0.014 14.6 0.4 0.16 11.2 0.3 2.0 1 1 0 1 1 1 0 Phosphoribosyl transferase Sigma70_r4 PF04545.11 gi|345006808|ref|YP_004809661.1| - 0.039 13.2 0.0 0.082 12.2 0.0 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 GerE PF00196.14 gi|345006808|ref|YP_004809661.1| - 0.043 13.1 0.0 0.08 12.2 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family HTH_24 PF13412.1 gi|345006808|ref|YP_004809661.1| - 0.066 12.6 0.0 0.16 11.4 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_31 PF13560.1 gi|345006808|ref|YP_004809661.1| - 0.066 13.4 1.8 0.44 10.7 0.7 2.7 2 1 0 2 2 2 0 Helix-turn-helix domain HTH_28 PF13518.1 gi|345006808|ref|YP_004809661.1| - 0.084 12.8 0.1 0.38 10.8 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain ADH_N PF08240.7 gi|345006809|ref|YP_004809662.1| - 5.1e-09 35.8 0.0 7.7e-09 35.2 0.0 1.3 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.21 gi|345006809|ref|YP_004809662.1| - 6.2e-06 25.7 0.0 1e-05 25.1 0.0 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase Hydrolase_3 PF08282.7 gi|345006810|ref|YP_004809663.1| - 1.9e-09 37.4 0.0 0.00011 21.9 0.0 2.1 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|345006810|ref|YP_004809663.1| - 0.00093 19.4 0.0 0.01 16.0 0.0 2.2 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase DHDPS PF00701.17 gi|345006811|ref|YP_004809664.1| - 5e-67 225.5 0.0 5.6e-67 225.3 0.0 1.0 1 0 0 1 1 1 1 Dihydrodipicolinate synthetase family ABC_tran PF00005.22 gi|345006812|ref|YP_004809665.1| - 6.8e-33 113.8 0.0 9.6e-33 113.3 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|345006812|ref|YP_004809665.1| - 1.1e-17 64.1 0.2 2.1e-17 63.1 0.2 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|345006812|ref|YP_004809665.1| - 2.5e-09 37.5 0.0 7.2e-05 22.8 0.0 2.1 1 1 1 2 2 2 2 AAA domain AAA_22 PF13401.1 gi|345006812|ref|YP_004809665.1| - 0.00036 20.6 0.1 0.0011 19.0 0.1 1.8 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|345006812|ref|YP_004809665.1| - 0.0036 17.2 0.0 0.0063 16.5 0.0 1.4 1 0 0 1 1 1 1 AAA ATPase domain AAA_18 PF13238.1 gi|345006812|ref|YP_004809665.1| - 0.0049 17.1 0.0 0.011 16.0 0.0 1.7 2 0 0 2 2 2 1 AAA domain DUF258 PF03193.11 gi|345006812|ref|YP_004809665.1| - 0.0088 15.2 0.1 0.016 14.3 0.1 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA PF00004.24 gi|345006812|ref|YP_004809665.1| - 0.015 15.5 0.1 0.046 13.9 0.0 2.0 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_13 PF13166.1 gi|345006812|ref|YP_004809665.1| - 0.015 13.7 1.1 1.5 7.1 0.0 2.6 2 1 1 3 3 3 0 AAA domain AAA_17 PF13207.1 gi|345006812|ref|YP_004809665.1| - 0.019 15.7 0.1 0.043 14.6 0.0 1.7 2 0 0 2 2 1 0 AAA domain AAA_5 PF07728.9 gi|345006812|ref|YP_004809665.1| - 0.038 13.6 0.0 0.082 12.6 0.0 1.5 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) PduV-EutP PF10662.4 gi|345006812|ref|YP_004809665.1| - 0.055 12.9 0.1 0.19 11.2 0.0 2.0 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation AAA_29 PF13555.1 gi|345006812|ref|YP_004809665.1| - 0.13 11.8 0.1 0.23 10.9 0.1 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain tRNA_lig_kinase PF08303.6 gi|345006812|ref|YP_004809665.1| - 0.17 11.7 0.0 0.3 10.9 0.0 1.3 1 0 0 1 1 1 0 tRNA ligase kinase domain ABC_tran PF00005.22 gi|345006813|ref|YP_004809666.1| - 1.4e-26 93.4 0.0 1.9e-26 92.9 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|345006813|ref|YP_004809666.1| - 5.1e-21 74.7 0.0 9.5e-21 73.9 0.0 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|345006813|ref|YP_004809666.1| - 1.8e-05 24.8 0.0 0.00027 20.9 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|345006813|ref|YP_004809666.1| - 0.00011 22.4 0.6 0.0047 17.0 0.4 2.7 2 1 0 2 2 2 1 AAA domain AAA_25 PF13481.1 gi|345006813|ref|YP_004809666.1| - 0.00011 21.7 0.3 0.031 13.6 0.0 2.5 2 1 0 2 2 2 2 AAA domain AAA_10 PF12846.2 gi|345006813|ref|YP_004809666.1| - 0.0013 18.2 0.5 0.15 11.4 0.0 2.5 2 1 0 3 3 3 1 AAA-like domain DUF2075 PF09848.4 gi|345006813|ref|YP_004809666.1| - 0.016 14.1 0.0 0.028 13.4 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) DUF87 PF01935.12 gi|345006813|ref|YP_004809666.1| - 0.059 13.1 0.3 0.12 12.1 0.2 1.4 1 0 0 1 1 1 0 Domain of unknown function DUF87 AAA_16 PF13191.1 gi|345006813|ref|YP_004809666.1| - 0.072 13.0 0.1 0.22 11.5 0.0 1.7 2 0 0 2 2 2 0 AAA ATPase domain CbiA PF01656.18 gi|345006813|ref|YP_004809666.1| - 0.075 12.4 1.1 0.45 9.9 0.2 2.1 2 0 0 2 2 2 0 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_29 PF13555.1 gi|345006813|ref|YP_004809666.1| - 0.08 12.4 0.0 0.16 11.5 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA PF00004.24 gi|345006813|ref|YP_004809666.1| - 0.09 12.9 0.0 1 9.5 0.0 2.1 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) SMC_N PF02463.14 gi|345006813|ref|YP_004809666.1| - 0.1 11.8 0.0 0.18 10.9 0.0 1.4 1 1 0 1 1 1 0 RecF/RecN/SMC N terminal domain AAA_33 PF13671.1 gi|345006813|ref|YP_004809666.1| - 0.14 12.0 0.0 0.27 11.1 0.0 1.5 1 0 0 1 1 1 0 AAA domain BPD_transp_1 PF00528.17 gi|345006814|ref|YP_004809667.1| - 3.8e-25 88.4 9.3 3.8e-25 88.4 6.4 1.4 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.2 gi|345006814|ref|YP_004809667.1| - 0.00013 21.2 7.9 0.00017 20.8 0.1 2.9 3 0 0 3 3 3 2 N-terminal TM domain of oligopeptide transport permease C BPD_transp_1 PF00528.17 gi|345006815|ref|YP_004809668.1| - 4.9e-37 127.2 18.6 4.9e-37 127.2 12.9 1.8 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_5 PF00496.17 gi|345006816|ref|YP_004809669.1| - 1.1e-70 238.3 4.6 1.6e-70 237.8 3.2 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle DDE_Tnp_IS1595 PF12762.2 gi|345006817|ref|YP_004809670.1| - 8.2e-22 77.6 0.0 1.6e-21 76.7 0.0 1.5 1 0 0 1 1 1 1 ISXO2-like transposase domain Zn_Tnp_IS1595 PF12760.2 gi|345006817|ref|YP_004809670.1| - 2.1e-07 30.6 4.0 3.6e-07 29.8 2.8 1.4 1 0 0 1 1 1 1 Transposase zinc-ribbon domain DUF2089 PF09862.4 gi|345006817|ref|YP_004809670.1| - 0.011 15.5 0.0 0.017 14.9 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2089) Zn_Tnp_IS1 PF03811.8 gi|345006817|ref|YP_004809670.1| - 0.012 15.0 5.3 0.012 15.0 3.7 2.0 2 0 0 2 2 2 0 InsA N-terminal domain DRP PF06044.7 gi|345006817|ref|YP_004809670.1| - 0.036 13.0 0.3 0.056 12.4 0.2 1.2 1 0 0 1 1 1 0 Dam-replacing family zf-ISL3 PF14690.1 gi|345006817|ref|YP_004809670.1| - 4.9 7.2 8.0 21 5.2 0.5 2.9 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 DUF326 PF03860.11 gi|345006818|ref|YP_004809671.1| - 0.00085 18.9 49.0 0.0049 16.5 3.6 5.7 4 3 0 4 4 4 3 Domain of Unknown Function (DUF326) BAR PF03114.13 gi|345006818|ref|YP_004809671.1| - 0.0087 15.5 0.1 0.011 15.2 0.0 1.2 1 0 0 1 1 1 1 BAR domain UPF0150 PF03681.10 gi|345006818|ref|YP_004809671.1| - 1.6 8.4 6.1 3.2 7.4 0.8 2.7 3 0 0 3 3 3 0 Uncharacterised protein family (UPF0150) MR_MLE_C PF13378.1 gi|345006819|ref|YP_004809672.1| - 2.4e-30 104.7 0.0 7.8e-30 103.1 0.0 1.8 2 0 0 2 2 2 1 Enolase C-terminal domain-like MR_MLE_N PF02746.11 gi|345006819|ref|YP_004809672.1| - 3.9e-15 55.8 0.1 1.9e-14 53.6 0.0 2.1 2 0 0 2 2 2 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain MR_MLE PF01188.16 gi|345006819|ref|YP_004809672.1| - 3.7e-11 43.3 5.8 5.5e-11 42.8 0.1 3.4 4 0 0 4 4 4 1 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain SBP_bac_11 PF13531.1 gi|345006819|ref|YP_004809672.1| - 0.012 15.3 0.0 0.019 14.6 0.0 1.3 1 0 0 1 1 1 0 Bacterial extracellular solute-binding protein PfkB PF00294.19 gi|345006820|ref|YP_004809673.1| - 7.3e-42 143.5 1.2 9.2e-42 143.1 0.8 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase AAA PF00004.24 gi|345006821|ref|YP_004809674.1| - 2.7e-11 43.7 0.0 3.1e-10 40.3 0.0 2.4 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.1 gi|345006821|ref|YP_004809674.1| - 9.9e-07 28.9 0.0 2.5e-05 24.4 0.0 2.9 2 1 0 2 2 2 1 AAA domain RuvB_N PF05496.7 gi|345006821|ref|YP_004809674.1| - 2e-05 23.7 0.0 3.4e-05 23.0 0.0 1.3 1 0 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus AAA_17 PF13207.1 gi|345006821|ref|YP_004809674.1| - 8.6e-05 23.3 0.1 0.00049 20.9 0.0 2.4 1 1 1 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|345006821|ref|YP_004809674.1| - 0.00028 20.9 0.4 0.02 14.8 0.1 3.2 2 1 0 2 2 2 1 AAA ATPase domain AAA_5 PF07728.9 gi|345006821|ref|YP_004809674.1| - 0.001 18.8 0.0 0.0035 17.0 0.0 1.9 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) Zeta_toxin PF06414.7 gi|345006821|ref|YP_004809674.1| - 0.0011 18.0 0.0 0.0022 17.1 0.0 1.4 1 0 0 1 1 1 1 Zeta toxin AAA_28 PF13521.1 gi|345006821|ref|YP_004809674.1| - 0.0035 17.3 0.0 0.011 15.7 0.0 1.8 1 0 0 1 1 1 1 AAA domain Rad17 PF03215.10 gi|345006821|ref|YP_004809674.1| - 0.0036 16.0 0.0 0.22 10.1 0.0 2.1 2 0 0 2 2 2 1 Rad17 cell cycle checkpoint protein AAA_33 PF13671.1 gi|345006821|ref|YP_004809674.1| - 0.0038 17.1 0.0 0.0085 15.9 0.0 1.6 1 0 0 1 1 1 1 AAA domain IstB_IS21 PF01695.12 gi|345006821|ref|YP_004809674.1| - 0.004 16.6 0.0 0.0092 15.4 0.0 1.6 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_18 PF13238.1 gi|345006821|ref|YP_004809674.1| - 0.0048 17.2 0.0 0.074 13.3 0.0 2.4 2 1 0 2 2 2 1 AAA domain AAA_25 PF13481.1 gi|345006821|ref|YP_004809674.1| - 0.012 15.0 1.1 0.16 11.3 0.1 2.6 1 1 0 2 2 2 0 AAA domain RNA_helicase PF00910.17 gi|345006821|ref|YP_004809674.1| - 0.018 15.2 0.0 0.051 13.7 0.0 1.8 1 0 0 1 1 1 0 RNA helicase AAA_14 PF13173.1 gi|345006821|ref|YP_004809674.1| - 0.02 14.7 0.0 0.045 13.6 0.0 1.6 1 0 0 1 1 1 0 AAA domain Bac_DnaA PF00308.13 gi|345006821|ref|YP_004809674.1| - 0.031 13.9 0.0 0.64 9.6 0.0 2.3 2 0 0 2 2 2 0 Bacterial dnaA protein DUF1320 PF07030.7 gi|345006821|ref|YP_004809674.1| - 0.042 13.5 0.2 0.22 11.2 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF1320) AAA_24 PF13479.1 gi|345006821|ref|YP_004809674.1| - 0.053 13.0 0.0 0.12 11.9 0.0 1.5 1 0 0 1 1 1 0 AAA domain PqqD PF05402.7 gi|345006821|ref|YP_004809674.1| - 0.071 13.1 0.1 0.29 11.1 0.0 2.0 2 0 0 2 2 2 0 Coenzyme PQQ synthesis protein D (PqqD) DUF258 PF03193.11 gi|345006821|ref|YP_004809674.1| - 0.14 11.3 0.0 0.23 10.6 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 DUF815 PF05673.8 gi|345006821|ref|YP_004809674.1| - 0.14 11.0 0.0 0.28 10.0 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF815) ABC_tran PF00005.22 gi|345006823|ref|YP_004809676.1| - 1e-35 123.0 0.0 1.3e-35 122.6 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|345006823|ref|YP_004809676.1| - 3.8e-12 46.7 0.0 1.3e-06 28.5 0.0 2.1 2 0 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|345006823|ref|YP_004809676.1| - 2.4e-10 40.0 0.2 7.6e-07 28.5 0.0 2.1 1 1 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_10 PF12846.2 gi|345006823|ref|YP_004809676.1| - 2.7e-06 27.0 0.3 0.012 15.0 0.0 2.2 1 1 0 2 2 2 2 AAA-like domain AAA_22 PF13401.1 gi|345006823|ref|YP_004809676.1| - 2.3e-05 24.5 0.1 0.00018 21.6 0.0 2.0 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|345006823|ref|YP_004809676.1| - 0.00013 21.4 0.0 0.00024 20.5 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|345006823|ref|YP_004809676.1| - 0.00049 20.1 0.5 0.0013 18.7 0.4 1.8 1 1 0 1 1 1 1 AAA ATPase domain DUF258 PF03193.11 gi|345006823|ref|YP_004809676.1| - 0.0006 19.0 0.0 0.001 18.3 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 Arch_ATPase PF01637.13 gi|345006823|ref|YP_004809676.1| - 0.0011 18.6 0.1 0.064 12.9 0.0 2.2 1 1 0 2 2 2 1 Archaeal ATPase ABC_ATPase PF09818.4 gi|345006823|ref|YP_004809676.1| - 0.0023 16.6 0.5 0.56 8.7 0.4 2.9 2 1 0 2 2 2 1 Predicted ATPase of the ABC class AAA_25 PF13481.1 gi|345006823|ref|YP_004809676.1| - 0.0052 16.2 0.0 0.21 10.9 0.0 2.4 2 0 0 2 2 2 1 AAA domain AAA_5 PF07728.9 gi|345006823|ref|YP_004809676.1| - 0.0079 15.9 0.1 4.6 6.9 0.0 2.3 2 0 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA_23 PF13476.1 gi|345006823|ref|YP_004809676.1| - 0.011 16.0 0.0 0.018 15.3 0.0 1.3 1 0 0 1 1 1 0 AAA domain SbcCD_C PF13558.1 gi|345006823|ref|YP_004809676.1| - 0.012 15.4 0.4 0.15 12.0 0.3 2.1 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit T2SE PF00437.15 gi|345006823|ref|YP_004809676.1| - 0.017 14.0 0.0 0.09 11.6 0.0 1.9 2 0 0 2 2 2 0 Type II/IV secretion system protein AAA_17 PF13207.1 gi|345006823|ref|YP_004809676.1| - 0.019 15.7 0.3 0.056 14.2 0.2 1.7 2 0 0 2 2 2 0 AAA domain AAA_33 PF13671.1 gi|345006823|ref|YP_004809676.1| - 0.019 14.8 0.2 0.024 14.5 0.1 1.6 1 1 0 1 1 1 0 AAA domain AAA PF00004.24 gi|345006823|ref|YP_004809676.1| - 0.025 14.7 0.2 0.51 10.5 0.1 2.2 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_30 PF13604.1 gi|345006823|ref|YP_004809676.1| - 0.025 14.1 0.0 0.039 13.5 0.0 1.6 1 1 0 1 1 1 0 AAA domain MobB PF03205.9 gi|345006823|ref|YP_004809676.1| - 0.037 13.7 0.0 0.11 12.2 0.0 1.8 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_19 PF13245.1 gi|345006823|ref|YP_004809676.1| - 0.046 13.4 0.0 0.12 12.0 0.0 1.8 1 0 0 1 1 1 0 Part of AAA domain MutS_V PF00488.16 gi|345006823|ref|YP_004809676.1| - 0.049 13.0 0.0 0.1 12.0 0.0 1.5 1 0 0 1 1 1 0 MutS domain V DUF3987 PF13148.1 gi|345006823|ref|YP_004809676.1| - 0.083 11.4 0.0 0.13 10.8 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3987) cobW PF02492.14 gi|345006823|ref|YP_004809676.1| - 0.099 12.0 0.2 0.26 10.7 0.1 1.9 1 1 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain TK PF00265.13 gi|345006823|ref|YP_004809676.1| - 0.11 12.0 0.0 8.8 5.8 0.0 2.1 2 0 0 2 2 2 0 Thymidine kinase CobA_CobO_BtuR PF02572.10 gi|345006823|ref|YP_004809676.1| - 0.12 12.0 0.3 0.19 11.3 0.2 1.4 1 0 0 1 1 1 0 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP AAA_14 PF13173.1 gi|345006823|ref|YP_004809676.1| - 0.12 12.2 0.0 0.56 10.1 0.0 2.0 1 1 0 2 2 2 0 AAA domain NB-ARC PF00931.17 gi|345006823|ref|YP_004809676.1| - 0.13 11.1 0.0 2.2 7.0 0.0 2.2 2 1 0 2 2 2 0 NB-ARC domain Adeno_IVa2 PF02456.10 gi|345006823|ref|YP_004809676.1| - 0.17 10.4 0.0 0.37 9.3 0.0 1.5 2 0 0 2 2 2 0 Adenovirus IVa2 protein BPD_transp_1 PF00528.17 gi|345006824|ref|YP_004809677.1| - 3.4e-18 65.8 6.6 3.4e-18 65.8 4.6 2.2 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component DUF4229 PF14012.1 gi|345006824|ref|YP_004809677.1| - 0.04 13.7 0.7 0.04 13.7 0.5 3.4 3 0 0 3 3 3 0 Protein of unknown function (DUF4229) PrgI PF12666.2 gi|345006824|ref|YP_004809677.1| - 3.6 7.7 10.2 5.2 7.2 4.4 2.7 2 2 1 3 3 3 0 PrgI family protein SBP_bac_3 PF00497.15 gi|345006825|ref|YP_004809678.1| - 1.1e-64 217.7 0.7 1.3e-64 217.5 0.5 1.0 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 NMT1 PF09084.6 gi|345006825|ref|YP_004809678.1| - 0.00034 20.2 0.0 0.0005 19.7 0.0 1.3 1 0 0 1 1 1 1 NMT1/THI5 like TAT_signal PF10518.4 gi|345006825|ref|YP_004809678.1| - 0.0016 18.2 2.3 0.0016 18.2 1.6 2.2 2 0 0 2 2 2 1 TAT (twin-arginine translocation) pathway signal sequence Phosphonate-bd PF12974.2 gi|345006825|ref|YP_004809678.1| - 0.0082 15.5 0.0 0.022 14.1 0.0 1.6 1 1 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein COX15-CtaA PF02628.10 gi|345006826|ref|YP_004809679.1| - 3.4e-31 108.2 35.6 7e-29 100.6 10.6 2.2 1 1 1 2 2 2 2 Cytochrome oxidase assembly protein Intg_mem_TP0381 PF09529.5 gi|345006826|ref|YP_004809679.1| - 1.9 7.7 8.3 0.49 9.6 0.7 2.5 2 1 0 2 2 2 0 Integral membrane protein (intg_mem_TP0381) IncA PF04156.9 gi|345006829|ref|YP_004809681.1| - 0.004 16.7 10.8 0.004 16.7 7.5 1.6 2 0 0 2 2 2 1 IncA protein GSH_synthase PF03199.10 gi|345006829|ref|YP_004809681.1| - 0.1 12.7 0.7 0.27 11.3 0.1 2.1 2 2 1 3 3 3 0 Eukaryotic glutathione synthase Tho2 PF11262.3 gi|345006829|ref|YP_004809681.1| - 0.12 11.3 4.9 0.2 10.6 3.4 1.4 1 0 0 1 1 1 0 Transcription factor/nuclear export subunit protein 2 Baculo_PEP_C PF04513.7 gi|345006829|ref|YP_004809681.1| - 0.16 11.8 1.1 0.26 11.1 0.8 1.3 1 0 0 1 1 1 0 Baculovirus polyhedron envelope protein, PEP, C terminus Laminin_II PF06009.7 gi|345006829|ref|YP_004809681.1| - 0.16 11.7 6.3 0.057 13.1 2.5 1.6 2 0 0 2 2 2 0 Laminin Domain II Med9 PF07544.8 gi|345006829|ref|YP_004809681.1| - 0.31 10.7 11.4 0.33 10.7 5.8 2.4 2 0 0 2 2 2 0 RNA polymerase II transcription mediator complex subunit 9 MtrG PF04210.8 gi|345006829|ref|YP_004809681.1| - 0.32 10.6 3.0 0.52 10.0 0.1 2.4 1 1 1 2 2 2 0 Tetrahydromethanopterin S-methyltransferase, subunit G CALCOCO1 PF07888.6 gi|345006829|ref|YP_004809681.1| - 0.33 9.1 12.0 0.38 8.9 8.4 1.1 1 0 0 1 1 1 0 Calcium binding and coiled-coil domain (CALCOCO1) like DUF1878 PF08963.5 gi|345006829|ref|YP_004809681.1| - 0.4 10.9 5.5 0.68 10.1 0.0 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF1878) SseC PF04888.7 gi|345006829|ref|YP_004809681.1| - 0.56 9.4 10.3 0.92 8.7 7.1 1.3 1 0 0 1 1 1 0 Secretion system effector C (SseC) like family Allexi_40kDa PF05549.6 gi|345006829|ref|YP_004809681.1| - 0.63 9.2 3.2 1.2 8.4 2.2 1.4 1 0 0 1 1 1 0 Allexivirus 40kDa protein DUF1664 PF07889.7 gi|345006829|ref|YP_004809681.1| - 1.1 9.0 7.7 2 8.2 5.3 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1664) Prefoldin PF02996.12 gi|345006829|ref|YP_004809681.1| - 1.1 8.8 14.6 4.6 6.9 0.1 2.9 3 0 0 3 3 3 0 Prefoldin subunit YlqD PF11068.3 gi|345006829|ref|YP_004809681.1| - 1.2 9.2 12.8 0.09 12.8 4.1 2.3 2 1 0 2 2 2 0 YlqD protein V_ATPase_I PF01496.14 gi|345006829|ref|YP_004809681.1| - 1.4 6.6 9.7 0.91 7.3 5.6 1.3 1 1 0 1 1 1 0 V-type ATPase 116kDa subunit family AAA_13 PF13166.1 gi|345006829|ref|YP_004809681.1| - 1.7 6.9 21.4 0.018 13.5 5.1 2.0 2 0 0 2 2 2 0 AAA domain ABC_tran_2 PF12848.2 gi|345006829|ref|YP_004809681.1| - 2.3 8.1 17.0 0.11 12.3 5.0 2.7 3 0 0 3 3 2 0 ABC transporter DUF745 PF05335.8 gi|345006829|ref|YP_004809681.1| - 2.4 7.6 8.0 0.34 10.4 2.9 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF745) NPV_P10 PF05531.7 gi|345006829|ref|YP_004809681.1| - 3.5 7.9 6.8 65 3.8 4.7 2.3 1 1 0 1 1 1 0 Nucleopolyhedrovirus P10 protein ORF6C PF10552.4 gi|345006829|ref|YP_004809681.1| - 4.8 6.9 10.0 69 3.2 6.8 2.7 1 1 0 1 1 1 0 ORF6C domain Atg14 PF10186.4 gi|345006829|ref|YP_004809681.1| - 5.6 5.8 11.9 0.85 8.4 5.6 1.6 2 0 0 2 2 2 0 UV radiation resistance protein and autophagy-related subunit 14 SlyX PF04102.7 gi|345006829|ref|YP_004809681.1| - 6.1 7.2 13.2 0.84 10.0 4.9 2.4 2 1 1 3 3 2 0 SlyX XhlA PF10779.4 gi|345006829|ref|YP_004809681.1| - 8.7 6.3 16.6 85 3.1 11.4 2.5 1 1 1 2 2 2 0 Haemolysin XhlA Z1 PF10593.4 gi|345006829|ref|YP_004809681.1| - 8.7 5.4 8.3 6.2 5.9 4.5 1.6 1 1 1 2 2 2 0 Z1 domain DUF2730 PF10805.3 gi|345006830|ref|YP_004809682.1| - 0.052 13.2 0.1 0.16 11.7 0.1 1.7 1 1 1 2 2 2 0 Protein of unknown function (DUF2730) AAA_4 PF04326.9 gi|345006831|ref|YP_004809683.1| - 0.00016 21.8 0.0 0.0002 21.5 0.0 1.1 1 0 0 1 1 1 1 Divergent AAA domain UPF0236 PF06782.6 gi|345006832|ref|YP_004809684.1| - 2.7e-07 29.4 0.0 1e-05 24.2 0.0 2.1 2 0 0 2 2 2 2 Uncharacterised protein family (UPF0236) Transposase_mut PF00872.13 gi|345006832|ref|YP_004809684.1| - 8.9e-05 21.2 0.9 0.041 12.4 0.1 2.5 2 1 0 2 2 2 2 Transposase, Mutator family Transglut_core3 PF13471.1 gi|345006833|ref|YP_004809685.1| - 0.063 13.0 0.0 0.13 12.0 0.0 1.5 1 0 0 1 1 1 0 Transglutaminase-like superfamily B12-binding PF02310.14 gi|345006833|ref|YP_004809685.1| - 0.084 12.7 0.0 0.23 11.3 0.0 1.7 2 0 0 2 2 2 0 B12 binding domain DUF307 PF03733.8 gi|345006834|ref|YP_004809686.1| - 0.94 9.9 5.6 0.55 10.7 0.3 2.3 2 1 0 2 2 2 0 Domain of unknown function (DUF307) AAA_4 PF04326.9 gi|345006836|ref|YP_004809688.1| - 2.5e-15 56.7 0.1 8.9e-15 54.9 0.0 1.8 2 0 0 2 2 2 1 Divergent AAA domain TerB PF05099.8 gi|345006836|ref|YP_004809688.1| - 0.006 16.3 0.5 0.016 14.9 0.2 1.9 2 0 0 2 2 2 1 Tellurite resistance protein TerB DUF1447 PF07288.6 gi|345006836|ref|YP_004809688.1| - 0.034 13.9 0.4 0.034 13.9 0.3 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1447) Med2 PF11214.3 gi|345006836|ref|YP_004809688.1| - 0.18 11.8 5.6 0.32 11.0 0.1 3.1 3 1 0 3 3 3 0 Mediator complex subunit 2 GIY-YIG PF01541.19 gi|345006836|ref|YP_004809688.1| - 0.48 10.8 2.7 1.1 9.6 0.3 2.4 2 0 0 2 2 2 0 GIY-YIG catalytic domain zf-RING_3 PF14369.1 gi|345006837|ref|YP_004809689.1| - 0.053 13.5 0.7 0.13 12.3 0.5 1.7 1 0 0 1 1 1 0 zinc-finger DUF262 PF03235.9 gi|345006839|ref|YP_004809691.1| - 5e-25 88.7 0.6 5e-25 88.7 0.4 1.7 2 0 0 2 2 2 1 Protein of unknown function DUF262 HNH_4 PF13395.1 gi|345006839|ref|YP_004809691.1| - 0.026 14.1 0.0 0.066 12.8 0.0 1.6 1 0 0 1 1 1 0 HNH endonuclease DUF262 PF03235.9 gi|345006840|ref|YP_004809692.1| - 1.2e-28 100.6 1.5 1.5e-28 100.2 0.2 1.9 2 0 0 2 2 2 1 Protein of unknown function DUF262 AAA_4 PF04326.9 gi|345006840|ref|YP_004809692.1| - 2.1e-19 69.8 0.0 4.8e-19 68.7 0.0 1.6 1 0 0 1 1 1 1 Divergent AAA domain DUF1524 PF07510.6 gi|345006840|ref|YP_004809692.1| - 1.9e-08 34.2 0.0 5.5e-08 32.7 0.0 1.8 1 0 0 1 1 1 1 Protein of unknown function (DUF1524) S1 PF00575.18 gi|345006841|ref|YP_004809693.1| - 0.1 12.6 0.3 12 6.0 0.0 2.8 2 0 0 2 2 2 0 S1 RNA binding domain DUF499 PF04465.7 gi|345006842|ref|YP_004809694.1| - 5.3e-36 123.6 0.0 1.3e-29 102.5 0.0 2.1 2 0 0 2 2 2 2 Protein of unknown function (DUF499) FliD_C PF07195.7 gi|345006842|ref|YP_004809694.1| - 0.044 13.0 0.0 0.14 11.4 0.0 1.9 1 0 0 1 1 1 0 Flagellar hook-associated protein 2 C-terminus DUF1156 PF06634.7 gi|345006844|ref|YP_004809696.1| - 1.4e-14 53.5 0.1 3.1e-14 52.4 0.1 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF1156) Methyltransf_26 PF13659.1 gi|345006844|ref|YP_004809696.1| - 8.1e-10 38.7 0.0 1.3e-08 34.8 0.0 2.6 1 1 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.13 gi|345006844|ref|YP_004809696.1| - 1.7e-05 24.5 0.0 0.015 14.8 0.0 2.5 2 0 0 2 2 2 2 Putative RNA methylase family UPF0020 N6_N4_Mtase PF01555.13 gi|345006844|ref|YP_004809696.1| - 0.0012 18.3 0.5 0.0031 17.0 0.3 1.9 1 1 0 1 1 1 1 DNA methylase zf-ribbon_3 PF13248.1 gi|345006844|ref|YP_004809696.1| - 0.25 10.6 1.2 5.9 6.2 0.1 2.4 2 0 0 2 2 2 0 zinc-ribbon domain SNF2_N PF00176.18 gi|345006845|ref|YP_004809697.1| - 1.6e-16 60.0 0.0 3.5e-16 58.8 0.0 1.5 1 0 0 1 1 1 1 SNF2 family N-terminal domain Helicase_C PF00271.26 gi|345006845|ref|YP_004809697.1| - 3.2e-12 46.1 0.0 9.5e-12 44.6 0.0 1.8 1 0 0 1 1 1 1 Helicase conserved C-terminal domain PLDc_2 PF13091.1 gi|345006845|ref|YP_004809697.1| - 1.1e-08 34.9 0.0 1.1e-07 31.6 0.0 2.3 2 0 0 2 2 2 1 PLD-like domain ResIII PF04851.10 gi|345006845|ref|YP_004809697.1| - 0.00013 21.8 0.0 0.00072 19.4 0.0 2.2 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit DNA_pol_delta_4 PF04081.8 gi|345006845|ref|YP_004809697.1| - 0.059 13.6 0.0 0.059 13.6 0.0 2.4 2 0 0 2 2 2 0 DNA polymerase delta, subunit 4 GerE PF00196.14 gi|345006846|ref|YP_004809698.1| - 8.9e-09 34.5 0.4 1.3e-07 30.8 0.1 2.5 2 0 0 2 2 2 1 Bacterial regulatory proteins, luxR family SprT-like PF10263.4 gi|345006846|ref|YP_004809698.1| - 1.9e-06 27.6 9.7 3.2e-06 26.8 6.5 1.6 1 1 0 1 1 1 1 SprT-like family Sigma70_r4_2 PF08281.7 gi|345006846|ref|YP_004809698.1| - 6.7e-06 25.4 2.3 1.5e-05 24.3 0.2 2.5 3 0 0 3 3 3 1 Sigma-70, region 4 Sigma70_r4 PF04545.11 gi|345006846|ref|YP_004809698.1| - 0.0012 18.1 2.1 0.046 13.0 0.1 2.9 3 0 0 3 3 3 1 Sigma-70, region 4 HTH_23 PF13384.1 gi|345006846|ref|YP_004809698.1| - 0.0042 16.6 1.2 0.021 14.4 0.0 2.5 3 0 0 3 3 3 1 Homeodomain-like domain Peptidase_MA_2 PF13485.1 gi|345006846|ref|YP_004809698.1| - 0.0047 16.9 0.3 0.01 15.8 0.2 1.6 1 0 0 1 1 1 1 Peptidase MA superfamily HTH_Tnp_ISL3 PF13542.1 gi|345006846|ref|YP_004809698.1| - 0.013 14.6 0.0 0.16 11.1 0.0 2.8 2 0 0 2 2 2 0 Helix-turn-helix domain of transposase family ISL3 BSP PF04450.7 gi|345006846|ref|YP_004809698.1| - 0.029 13.8 0.3 0.049 13.0 0.2 1.5 1 0 0 1 1 1 0 Peptidase of plants and bacteria HTH_40 PF14493.1 gi|345006846|ref|YP_004809698.1| - 0.073 13.3 0.4 0.2 11.8 0.3 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain DUF4157 PF13699.1 gi|345006846|ref|YP_004809698.1| - 0.085 13.0 0.2 0.29 11.3 0.1 2.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4157) Remorin_C PF03763.8 gi|345006846|ref|YP_004809698.1| - 0.099 12.1 1.8 0.2 11.2 1.2 1.4 1 0 0 1 1 1 0 Remorin, C-terminal region Phage_CI_repr PF07022.8 gi|345006846|ref|YP_004809698.1| - 0.12 12.4 0.0 11 6.2 0.0 2.4 2 0 0 2 2 2 0 Bacteriophage CI repressor helix-turn-helix domain HTH_10 PF04967.7 gi|345006846|ref|YP_004809698.1| - 0.12 11.9 0.3 0.41 10.2 0.0 2.0 2 0 0 2 2 2 0 HTH DNA binding domain HTH_38 PF13936.1 gi|345006846|ref|YP_004809698.1| - 0.17 11.4 3.0 0.55 9.8 0.0 2.4 2 0 0 2 2 2 0 Helix-turn-helix domain Resolvase PF00239.16 gi|345006847|ref|YP_004809699.1| - 2.5e-27 95.4 0.9 3.5e-27 94.9 0.6 1.2 1 0 0 1 1 1 1 Resolvase, N terminal domain HTH_7 PF02796.10 gi|345006847|ref|YP_004809699.1| - 0.0091 15.8 0.0 0.045 13.6 0.0 2.2 2 0 0 2 2 2 1 Helix-turn-helix domain of resolvase HTH_28 PF13518.1 gi|345006847|ref|YP_004809699.1| - 0.054 13.5 0.0 0.13 12.3 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_29 PF13551.1 gi|345006847|ref|YP_004809699.1| - 0.12 12.5 0.1 0.84 9.8 0.0 2.3 2 1 1 3 3 3 0 Winged helix-turn helix CENP-P PF13096.1 gi|345006847|ref|YP_004809699.1| - 0.16 11.2 1.1 0.63 9.3 0.4 2.0 1 1 1 2 2 2 0 CENP-A-nucleosome distal (CAD) centromere subunit, CENP-P WYL PF13280.1 gi|345006848|ref|YP_004809700.1| - 3.6e-05 23.6 0.0 9.1e-05 22.3 0.0 1.6 1 1 0 1 1 1 1 WYL domain ATP-synt_B PF00430.13 gi|345006850|ref|YP_004809702.1| - 1.6 8.5 8.3 0.83 9.4 4.0 1.9 2 0 0 2 2 2 0 ATP synthase B/B' CF(0) Phage_integrase PF00589.17 gi|345006851|ref|YP_004809703.1| - 4.3e-18 65.5 0.1 1.9e-17 63.4 0.0 1.9 2 0 0 2 2 2 1 Phage integrase family Phage_int_SAM_4 PF13495.1 gi|345006851|ref|YP_004809703.1| - 0.012 15.8 0.5 0.14 12.5 0.0 2.5 3 0 0 3 3 3 0 Phage integrase, N-terminal SAM-like domain UPF0236 PF06782.6 gi|345006852|ref|YP_004809704.1| - 2.7e-07 29.4 0.0 1e-05 24.2 0.0 2.1 2 0 0 2 2 2 2 Uncharacterised protein family (UPF0236) Transposase_mut PF00872.13 gi|345006852|ref|YP_004809704.1| - 8.9e-05 21.2 0.9 0.041 12.4 0.1 2.5 2 1 0 2 2 2 2 Transposase, Mutator family DDE_Tnp_1 PF01609.16 gi|345006853|ref|YP_004809705.1| - 0.01 15.4 0.1 0.044 13.3 0.1 2.0 1 1 0 1 1 1 0 Transposase DDE domain FYRC PF05965.9 gi|345006854|ref|YP_004809706.1| - 0.04 13.7 0.0 0.056 13.2 0.0 1.3 1 1 0 1 1 1 0 F/Y rich C-terminus PilO PF04350.8 gi|345006854|ref|YP_004809706.1| - 0.09 12.6 0.1 0.11 12.4 0.0 1.2 1 0 0 1 1 1 0 Pilus assembly protein, PilO DUF1931 PF09123.6 gi|345006855|ref|YP_004809707.1| - 0.00038 20.4 0.4 0.0004 20.3 0.3 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1931) Histone PF00125.19 gi|345006855|ref|YP_004809707.1| - 0.00062 19.8 0.0 0.00096 19.2 0.0 1.5 1 1 0 1 1 1 1 Core histone H2A/H2B/H3/H4 CBFD_NFYB_HMF PF00808.18 gi|345006855|ref|YP_004809707.1| - 0.0012 18.8 0.0 0.0015 18.5 0.0 1.4 1 1 0 1 1 1 1 Histone-like transcription factor (CBF/NF-Y) and archaeal histone SBP_bac_7 PF03480.8 gi|345006855|ref|YP_004809707.1| - 0.071 12.1 0.0 0.081 12.0 0.0 1.0 1 0 0 1 1 1 0 Bacterial extracellular solute-binding protein, family 7 DUF1631 PF07793.6 gi|345006855|ref|YP_004809707.1| - 0.079 11.0 0.2 0.083 11.0 0.2 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1631) Glutaredoxin PF00462.19 gi|345006855|ref|YP_004809707.1| - 0.16 11.9 0.1 0.22 11.5 0.1 1.2 1 0 0 1 1 1 0 Glutaredoxin Exonuc_VII_L PF02601.10 gi|345006856|ref|YP_004809708.1| - 4.8e-54 183.7 1.6 7.4e-54 183.0 1.1 1.2 1 0 0 1 1 1 1 Exonuclease VII, large subunit tRNA_anti_2 PF13742.1 gi|345006856|ref|YP_004809708.1| - 2.5e-21 75.3 0.0 4.1e-21 74.6 0.0 1.4 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA_anti-codon PF01336.20 gi|345006856|ref|YP_004809708.1| - 0.0031 17.3 0.0 0.0057 16.4 0.0 1.4 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain Exonuc_VII_S PF02609.11 gi|345006857|ref|YP_004809709.1| - 1.8e-09 37.2 2.3 1.9e-09 37.1 1.6 1.1 1 0 0 1 1 1 1 Exonuclease VII small subunit DUF2120 PF09893.4 gi|345006857|ref|YP_004809709.1| - 0.13 12.1 0.6 0.14 12.1 0.4 1.1 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2120) Unstab_antitox PF09720.5 gi|345006857|ref|YP_004809709.1| - 0.29 10.8 2.5 0.37 10.5 1.8 1.5 1 1 0 1 1 1 0 Putative addiction module component TusA PF01206.12 gi|345006858|ref|YP_004809710.1| - 0.0074 15.8 0.0 0.011 15.3 0.0 1.3 1 0 0 1 1 1 1 Sulfurtransferase TusA HisKA PF00512.20 gi|345006858|ref|YP_004809710.1| - 0.018 14.9 1.0 0.028 14.4 0.7 1.3 1 0 0 1 1 1 0 His Kinase A (phospho-acceptor) domain Sigma70_r4 PF04545.11 gi|345006858|ref|YP_004809710.1| - 0.037 13.3 1.4 0.042 13.1 0.1 1.7 2 0 0 2 2 2 0 Sigma-70, region 4 Sigma70_r4_2 PF08281.7 gi|345006858|ref|YP_004809710.1| - 0.039 13.4 0.9 0.048 13.1 0.0 1.6 2 0 0 2 2 2 0 Sigma-70, region 4 DUF3486 PF11985.3 gi|345006858|ref|YP_004809710.1| - 0.061 13.3 0.3 0.071 13.1 0.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3486) Metal_resist PF13801.1 gi|345006858|ref|YP_004809710.1| - 0.079 12.9 0.4 0.11 12.4 0.3 1.2 1 0 0 1 1 1 0 Heavy-metal resistance EcoEI_R_C PF08463.5 gi|345006858|ref|YP_004809710.1| - 0.094 12.5 0.4 0.12 12.2 0.3 1.1 1 0 0 1 1 1 0 EcoEI R protein C-terminal HTH_38 PF13936.1 gi|345006858|ref|YP_004809710.1| - 0.098 12.2 0.0 0.2 11.2 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain Sigma70_r1_1 PF03979.9 gi|345006858|ref|YP_004809710.1| - 0.14 12.1 1.1 1.8 8.5 0.1 2.4 2 1 0 2 2 2 0 Sigma-70 factor, region 1.1 TrbC PF04956.8 gi|345006859|ref|YP_004809711.1| - 0.17 11.8 3.1 0.24 11.4 1.1 1.9 2 0 0 2 2 2 0 TrbC/VIRB2 family A2M_N PF01835.14 gi|345006861|ref|YP_004809713.1| - 0.0027 17.9 0.5 0.16 12.2 0.0 2.7 2 1 0 2 2 2 1 MG2 domain DUF3085 PF11284.3 gi|345006861|ref|YP_004809713.1| - 0.027 14.6 0.0 0.053 13.7 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3085) TAT_signal PF10518.4 gi|345006861|ref|YP_004809713.1| - 0.082 12.9 2.6 0.14 12.2 1.8 1.4 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence SPO22 PF08631.5 gi|345006863|ref|YP_004809715.1| - 0.081 11.9 0.0 5.4 6.0 0.0 2.4 3 0 0 3 3 3 0 Meiosis protein SPO22/ZIP4 like AAA_10 PF12846.2 gi|345006864|ref|YP_004809716.1| - 3.1e-38 131.9 0.6 3.1e-38 131.9 0.4 1.7 2 0 0 2 2 2 1 AAA-like domain CagE_TrbE_VirB PF03135.9 gi|345006864|ref|YP_004809716.1| - 0.001 18.8 0.0 0.0022 17.8 0.0 1.5 1 0 0 1 1 1 1 CagE, TrbE, VirB family, component of type IV transporter system AAA_22 PF13401.1 gi|345006864|ref|YP_004809716.1| - 0.0083 16.2 1.2 8 6.6 0.0 3.2 3 1 0 3 3 3 2 AAA domain Zot PF05707.7 gi|345006864|ref|YP_004809716.1| - 0.083 12.3 0.2 0.61 9.5 0.1 2.2 2 0 0 2 2 2 0 Zonular occludens toxin (Zot) AAA_10 PF12846.2 gi|345006865|ref|YP_004809717.1| - 7.3e-15 55.1 0.8 1.9e-14 53.7 0.1 1.9 2 0 0 2 2 2 1 AAA-like domain DUF87 PF01935.12 gi|345006865|ref|YP_004809717.1| - 0.00078 19.3 0.2 0.0064 16.3 0.0 2.7 3 1 0 3 3 3 1 Domain of unknown function DUF87 TraG-D_C PF12696.2 gi|345006865|ref|YP_004809717.1| - 0.016 15.1 0.3 0.046 13.5 0.0 1.9 2 0 0 2 2 2 0 TraM recognition site of TraD and TraG DNA_primase_S PF01896.14 gi|345006866|ref|YP_004809718.1| - 0.00046 20.0 0.0 0.0029 17.4 0.0 2.1 1 1 0 1 1 1 1 Eukaryotic and archaeal DNA primase small subunit AAA_22 PF13401.1 gi|345006868|ref|YP_004809720.1| - 9.1e-06 25.8 0.0 4.1e-05 23.7 0.0 2.1 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|345006868|ref|YP_004809720.1| - 2.2e-05 24.5 0.0 2.2e-05 24.5 0.0 4.5 5 1 0 5 5 5 1 AAA ATPase domain AAA_35 PF14516.1 gi|345006868|ref|YP_004809720.1| - 0.0038 15.9 0.0 2.3 6.7 0.0 2.3 2 0 0 2 2 2 2 AAA-like domain DUF2791 PF10923.3 gi|345006868|ref|YP_004809720.1| - 0.019 13.5 0.0 0.055 12.0 0.0 1.7 2 0 0 2 2 2 0 P-loop Domain of unknown function (DUF2791) AAA_25 PF13481.1 gi|345006868|ref|YP_004809720.1| - 0.034 13.5 0.3 0.54 9.6 0.0 3.1 4 0 0 4 4 4 0 AAA domain NACHT PF05729.7 gi|345006868|ref|YP_004809720.1| - 0.069 12.8 0.0 1.4 8.5 0.0 2.9 3 0 0 3 3 3 0 NACHT domain Endonuc-BglII PF09195.6 gi|345006870|ref|YP_004809722.1| - 0.002 17.6 0.0 0.0029 17.0 0.0 1.5 1 1 0 1 1 1 1 Restriction endonuclease BglII Zn_Tnp_IS1595 PF12760.2 gi|345006872|ref|YP_004809724.1| - 0.035 13.8 0.9 0.19 11.5 0.2 2.2 2 0 0 2 2 2 0 Transposase zinc-ribbon domain PHD PF00628.24 gi|345006872|ref|YP_004809724.1| - 0.92 9.2 6.6 2.2 8.0 2.7 2.5 2 1 0 2 2 2 0 PHD-finger CHASE3 PF05227.8 gi|345006874|ref|YP_004809726.1| - 0.039 13.6 0.3 1 9.0 0.0 2.1 2 0 0 2 2 2 0 CHASE3 domain DUF3990 PF13151.1 gi|345006874|ref|YP_004809726.1| - 0.063 12.6 0.0 0.077 12.3 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3990) DUF2250 PF10007.4 gi|345006876|ref|YP_004809728.1| - 0.00021 21.1 0.0 0.00043 20.1 0.0 1.5 1 1 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) Mrr_N PF14338.1 gi|345006876|ref|YP_004809728.1| - 0.0041 17.1 0.0 0.006 16.6 0.0 1.4 1 1 0 1 1 1 1 Mrr N-terminal domain HTH_27 PF13463.1 gi|345006876|ref|YP_004809728.1| - 0.0043 17.3 0.0 0.0062 16.8 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR_2 PF12802.2 gi|345006876|ref|YP_004809728.1| - 0.0055 16.3 0.0 0.0062 16.1 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_45 PF14947.1 gi|345006876|ref|YP_004809728.1| - 0.018 14.8 0.1 0.021 14.6 0.1 1.4 1 1 0 1 1 1 0 Winged helix-turn-helix DUF2161 PF09929.4 gi|345006876|ref|YP_004809728.1| - 0.019 14.8 0.0 0.029 14.2 0.0 1.3 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2161) HTH_24 PF13412.1 gi|345006876|ref|YP_004809728.1| - 0.026 13.8 0.0 0.3 10.4 0.0 2.0 1 1 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.1 gi|345006876|ref|YP_004809728.1| - 0.075 12.5 0.1 0.098 12.2 0.0 1.2 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain HTH_42 PF06224.7 gi|345006876|ref|YP_004809728.1| - 0.086 12.1 0.0 0.095 12.0 0.0 1.1 1 0 0 1 1 1 0 Winged helix DNA-binding domain DUF2084 PF09857.4 gi|345006876|ref|YP_004809728.1| - 0.11 12.2 0.0 4.1 7.1 0.0 2.2 1 1 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2084) HTH_20 PF12840.2 gi|345006878|ref|YP_004809730.1| - 1.9e-05 24.3 0.1 4.5e-05 23.1 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.14 gi|345006878|ref|YP_004809730.1| - 0.00012 21.7 0.0 0.00021 20.9 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB GntR PF00392.16 gi|345006878|ref|YP_004809730.1| - 0.0015 17.9 0.1 0.0045 16.3 0.0 1.8 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family HTH_Crp_2 PF13545.1 gi|345006878|ref|YP_004809730.1| - 0.0067 16.1 0.0 0.016 14.9 0.0 1.6 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_5 PF01022.15 gi|345006878|ref|YP_004809730.1| - 0.0079 15.8 0.0 0.013 15.1 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_23 PF13384.1 gi|345006878|ref|YP_004809730.1| - 0.011 15.3 0.0 0.023 14.3 0.0 1.5 1 0 0 1 1 1 0 Homeodomain-like domain MarR_2 PF12802.2 gi|345006878|ref|YP_004809730.1| - 0.011 15.3 0.1 0.02 14.5 0.1 1.4 1 0 0 1 1 1 0 MarR family HTH_36 PF13730.1 gi|345006878|ref|YP_004809730.1| - 0.025 14.7 0.0 0.045 13.8 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain Rrf2 PF02082.15 gi|345006878|ref|YP_004809730.1| - 0.044 13.8 0.0 1.1 9.4 0.0 2.2 2 0 0 2 2 2 0 Transcriptional regulator HTH_11 PF08279.7 gi|345006878|ref|YP_004809730.1| - 0.048 13.3 0.1 0.09 12.4 0.1 1.4 1 0 0 1 1 1 0 HTH domain HTH_IclR PF09339.5 gi|345006878|ref|YP_004809730.1| - 0.069 12.7 0.2 0.14 11.7 0.1 1.5 1 0 0 1 1 1 0 IclR helix-turn-helix domain Trp_repressor PF01371.14 gi|345006878|ref|YP_004809730.1| - 0.097 12.6 0.0 0.78 9.6 0.0 2.0 2 0 0 2 2 2 0 Trp repressor protein HTH_38 PF13936.1 gi|345006878|ref|YP_004809730.1| - 0.11 12.1 0.0 0.18 11.3 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain TAT_signal PF10518.4 gi|345006879|ref|YP_004809731.1| - 0.096 12.7 0.8 0.096 12.7 0.5 2.1 2 0 0 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence ODV-E18 PF10717.4 gi|345006880|ref|YP_004809732.1| - 0.023 14.1 0.3 0.029 13.7 0.1 1.3 1 1 0 1 1 1 0 Occlusion-derived virus envelope protein ODV-E18 PrgI PF12666.2 gi|345006880|ref|YP_004809732.1| - 0.037 14.1 0.8 0.039 14.0 0.5 1.0 1 0 0 1 1 1 0 PrgI family protein OPT PF03169.10 gi|345006880|ref|YP_004809732.1| - 0.055 11.8 0.9 0.063 11.7 0.6 1.0 1 0 0 1 1 1 0 OPT oligopeptide transporter protein DUF2244 PF10003.4 gi|345006880|ref|YP_004809732.1| - 0.11 11.8 0.8 0.12 11.6 0.5 1.0 1 0 0 1 1 1 0 Integral membrane protein (DUF2244) DUF1634 PF07843.6 gi|345006880|ref|YP_004809732.1| - 3.5 7.3 7.6 6.8 6.3 0.6 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF1634) DUF2065 PF09838.4 gi|345006881|ref|YP_004809733.1| - 0.062 13.0 11.1 0.096 12.4 0.6 3.0 3 0 0 3 3 3 0 Uncharacterized protein conserved in bacteria (DUF2065) ABC_tran PF00005.22 gi|345006882|ref|YP_004809734.1| - 6.1e-28 97.8 0.0 8.8e-28 97.3 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|345006882|ref|YP_004809734.1| - 5.7e-16 59.3 0.1 2.9e-13 50.4 0.1 2.1 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|345006882|ref|YP_004809734.1| - 0.01 15.8 0.2 0.043 13.7 0.0 2.1 1 1 1 2 2 2 1 AAA ATPase domain AAA_22 PF13401.1 gi|345006882|ref|YP_004809734.1| - 0.014 15.4 0.2 0.23 11.6 0.1 2.3 1 1 0 1 1 1 0 AAA domain AAA_14 PF13173.1 gi|345006882|ref|YP_004809734.1| - 0.02 14.8 0.1 5.5 6.9 0.0 2.3 2 0 0 2 2 2 0 AAA domain AAA_30 PF13604.1 gi|345006882|ref|YP_004809734.1| - 0.021 14.4 0.0 0.042 13.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_15 PF13175.1 gi|345006882|ref|YP_004809734.1| - 0.022 13.8 0.0 0.22 10.5 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain SMC_N PF02463.14 gi|345006882|ref|YP_004809734.1| - 0.023 13.9 0.0 2.8 7.1 0.0 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_23 PF13476.1 gi|345006882|ref|YP_004809734.1| - 0.027 14.7 0.0 0.061 13.6 0.0 1.5 2 0 0 2 2 2 0 AAA domain AAA_29 PF13555.1 gi|345006882|ref|YP_004809734.1| - 0.032 13.7 0.1 0.06 12.8 0.1 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA PF00004.24 gi|345006882|ref|YP_004809734.1| - 0.038 14.1 0.3 0.39 10.9 0.2 2.2 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) SbcCD_C PF13558.1 gi|345006882|ref|YP_004809734.1| - 0.04 13.8 0.0 0.21 11.5 0.0 2.1 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_10 PF12846.2 gi|345006882|ref|YP_004809734.1| - 0.078 12.3 0.1 0.14 11.5 0.1 1.6 1 1 0 1 1 1 0 AAA-like domain AAA_17 PF13207.1 gi|345006882|ref|YP_004809734.1| - 0.13 13.1 0.2 0.49 11.2 0.2 2.2 1 1 0 1 1 1 0 AAA domain cobW PF02492.14 gi|345006882|ref|YP_004809734.1| - 0.15 11.5 0.1 0.27 10.6 0.0 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain E1-E2_ATPase PF00122.15 gi|345006885|ref|YP_004809737.1| - 0.039 12.9 1.6 0.05 12.6 1.1 1.2 1 0 0 1 1 1 0 E1-E2 ATPase SpoVA PF03862.8 gi|345006885|ref|YP_004809737.1| - 0.086 12.9 2.5 0.12 12.4 1.7 1.3 1 0 0 1 1 1 0 SpoVA protein DUF3784 PF12650.2 gi|345006885|ref|YP_004809737.1| - 1.1 9.2 6.2 0.18 11.7 0.2 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF3784) DUF3169 PF11368.3 gi|345006885|ref|YP_004809737.1| - 1.8 7.7 5.2 2.7 7.1 3.6 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3169) UPF0175 PF03683.8 gi|345006886|ref|YP_004809738.1| - 7e-12 44.6 0.3 7.7e-12 44.5 0.2 1.1 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0175) tRNA_anti-codon PF01336.20 gi|345006889|ref|YP_004809741.1| - 0.00019 21.1 0.1 0.00036 20.3 0.0 1.5 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain HNH_2 PF13391.1 gi|345006890|ref|YP_004809742.1| - 0.00035 20.3 0.9 0.00086 19.0 0.5 1.8 1 1 0 1 1 1 1 HNH endonuclease HNH PF01844.18 gi|345006890|ref|YP_004809742.1| - 0.0011 18.7 1.6 0.0024 17.7 1.1 1.6 1 0 0 1 1 1 1 HNH endonuclease LexA_DNA_bind PF01726.11 gi|345006890|ref|YP_004809742.1| - 0.0067 15.9 0.0 1.5 8.4 0.0 2.6 2 0 0 2 2 2 2 LexA DNA binding domain HTH_Tnp_Tc5 PF03221.11 gi|345006890|ref|YP_004809742.1| - 0.059 13.1 0.0 4.7 7.1 0.0 2.5 2 0 0 2 2 2 0 Tc5 transposase DNA-binding domain Lipase3_N PF03893.11 gi|345006890|ref|YP_004809742.1| - 0.14 11.9 0.6 37 4.2 0.0 3.2 3 0 0 3 3 3 0 Lipase 3 N-terminal region Lar_restr_allev PF14354.1 gi|345006891|ref|YP_004809743.1| - 0.29 11.4 2.1 3.7 7.9 0.5 2.2 2 0 0 2 2 2 0 Restriction alleviation protein Lar zf-C2HC_2 PF13913.1 gi|345006891|ref|YP_004809743.1| - 2 8.2 5.1 6 6.6 1.4 2.7 2 1 0 2 2 2 0 zinc-finger of a C2HC-type HTH_5 PF01022.15 gi|345006892|ref|YP_004809744.1| - 5.5e-05 22.7 0.0 0.00015 21.3 0.0 1.8 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_45 PF14947.1 gi|345006892|ref|YP_004809744.1| - 0.0017 18.1 0.0 0.003 17.3 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix TrmB PF01978.14 gi|345006892|ref|YP_004809744.1| - 0.0072 16.0 0.1 0.029 14.0 0.0 2.0 1 1 1 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.2 gi|345006892|ref|YP_004809744.1| - 0.012 15.3 0.0 0.026 14.3 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_IclR PF09339.5 gi|345006892|ref|YP_004809744.1| - 0.015 14.8 0.0 0.088 12.4 0.0 2.2 1 1 0 1 1 1 0 IclR helix-turn-helix domain Phage_pRha PF09669.5 gi|345006892|ref|YP_004809744.1| - 0.022 15.0 0.0 0.048 14.0 0.0 1.5 1 0 0 1 1 1 0 Phage regulatory protein Rha (Phage_pRha) HTH_11 PF08279.7 gi|345006892|ref|YP_004809744.1| - 0.024 14.2 0.1 0.078 12.6 0.0 1.8 2 0 0 2 2 2 0 HTH domain DUF1724 PF08350.5 gi|345006892|ref|YP_004809744.1| - 0.042 13.3 0.0 0.073 12.6 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF1724) HTH_20 PF12840.2 gi|345006894|ref|YP_004809746.1| - 2.3e-11 43.3 0.0 3.6e-11 42.6 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|345006894|ref|YP_004809746.1| - 3.3e-08 33.0 0.0 7e-08 32.0 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.1 gi|345006894|ref|YP_004809746.1| - 1.7e-07 30.5 0.0 2.9e-07 29.7 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|345006894|ref|YP_004809746.1| - 5.5e-07 29.1 0.0 9.9e-07 28.3 0.0 1.4 1 0 0 1 1 1 1 MarR family MarR PF01047.17 gi|345006894|ref|YP_004809746.1| - 6e-06 25.8 0.0 1.3e-05 24.7 0.0 1.6 1 0 0 1 1 1 1 MarR family TrmB PF01978.14 gi|345006894|ref|YP_004809746.1| - 2.3e-05 23.9 0.0 4.4e-05 23.0 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB B-block_TFIIIC PF04182.7 gi|345006894|ref|YP_004809746.1| - 0.00065 19.4 0.0 0.0012 18.6 0.0 1.4 1 0 0 1 1 1 1 B-block binding subunit of TFIIIC DUF2513 PF10711.4 gi|345006894|ref|YP_004809746.1| - 0.014 15.4 0.0 0.021 14.8 0.0 1.2 1 0 0 1 1 1 0 Hypothetical protein (DUF2513) DUF2250 PF10007.4 gi|345006894|ref|YP_004809746.1| - 0.016 15.0 0.1 0.026 14.4 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) CDC37_C PF08564.5 gi|345006894|ref|YP_004809746.1| - 0.016 14.9 0.0 0.026 14.3 0.0 1.3 1 0 0 1 1 1 0 Cdc37 C terminal domain HTH_27 PF13463.1 gi|345006894|ref|YP_004809746.1| - 0.017 15.4 0.0 0.04 14.2 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_34 PF13601.1 gi|345006894|ref|YP_004809746.1| - 0.02 14.9 0.0 0.033 14.2 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain FaeA PF04703.7 gi|345006894|ref|YP_004809746.1| - 0.03 14.4 0.0 0.054 13.6 0.0 1.3 1 0 0 1 1 1 0 FaeA-like protein MnhB PF04039.8 gi|345006894|ref|YP_004809746.1| - 0.031 14.3 0.4 0.063 13.3 0.3 1.5 1 1 0 1 1 1 0 Domain related to MnhB subunit of Na+/H+ antiporter HTH_11 PF08279.7 gi|345006894|ref|YP_004809746.1| - 0.042 13.4 0.0 0.073 12.7 0.0 1.5 1 0 0 1 1 1 0 HTH domain HTH_10 PF04967.7 gi|345006894|ref|YP_004809746.1| - 0.052 13.1 0.0 0.12 12.0 0.0 1.5 1 0 0 1 1 1 0 HTH DNA binding domain SgrR_N PF12793.2 gi|345006894|ref|YP_004809746.1| - 0.057 13.4 0.0 0.09 12.7 0.0 1.4 1 1 0 1 1 1 0 Sugar transport-related sRNA regulator N-term EI24 PF07264.6 gi|345006894|ref|YP_004809746.1| - 0.074 12.4 1.2 0.1 11.9 0.8 1.2 1 0 0 1 1 1 0 Etoposide-induced protein 2.4 (EI24) Phage_rep_org_N PF09681.5 gi|345006894|ref|YP_004809746.1| - 0.074 12.6 0.0 0.12 11.8 0.0 1.2 1 0 0 1 1 1 0 N-terminal phage replisome organiser (Phage_rep_org_N) Sigma70_r4_2 PF08281.7 gi|345006894|ref|YP_004809746.1| - 0.095 12.1 0.0 0.19 11.2 0.0 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 Rrf2 PF02082.15 gi|345006894|ref|YP_004809746.1| - 0.098 12.7 0.0 0.22 11.6 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator HTH_Crp_2 PF13545.1 gi|345006894|ref|YP_004809746.1| - 0.11 12.3 0.0 0.19 11.5 0.0 1.3 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_7 PF02796.10 gi|345006894|ref|YP_004809746.1| - 0.15 11.9 0.0 0.33 10.8 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase DDE_Tnp_IS66 PF03050.9 gi|345006895|ref|YP_004809747.1| - 8.4e-53 179.3 0.1 8.4e-53 179.3 0.1 2.3 2 1 1 3 3 3 1 Transposase IS66 family DUF904 PF06005.7 gi|345006895|ref|YP_004809747.1| - 2.7e-10 40.3 5.7 9e-10 38.7 3.9 1.9 1 0 0 1 1 1 1 Protein of unknown function (DUF904) DUF972 PF06156.8 gi|345006895|ref|YP_004809747.1| - 0.00018 21.8 4.6 0.00052 20.3 3.2 1.7 1 0 0 1 1 1 1 Protein of unknown function (DUF972) CASP_C PF08172.7 gi|345006895|ref|YP_004809747.1| - 0.00025 20.1 2.2 0.00042 19.4 1.5 1.2 1 0 0 1 1 1 1 CASP C terminal bZIP_1 PF00170.16 gi|345006895|ref|YP_004809747.1| - 0.0021 17.9 7.9 0.0043 16.9 5.5 1.5 1 0 0 1 1 1 1 bZIP transcription factor SPX PF03105.14 gi|345006895|ref|YP_004809747.1| - 0.0024 17.7 0.1 0.0035 17.1 0.1 1.2 1 0 0 1 1 1 1 SPX domain Striatin PF08232.7 gi|345006895|ref|YP_004809747.1| - 0.0024 18.1 4.3 0.0051 17.1 3.0 1.5 1 0 0 1 1 1 1 Striatin family Tektin PF03148.9 gi|345006895|ref|YP_004809747.1| - 0.0041 15.7 2.6 0.0067 15.0 1.8 1.2 1 0 0 1 1 1 1 Tektin family DDE_Tnp_IS240 PF13610.1 gi|345006895|ref|YP_004809747.1| - 0.0083 16.1 0.7 0.018 15.0 0.0 1.9 2 1 0 2 2 1 1 DDE domain HOOK PF05622.7 gi|345006895|ref|YP_004809747.1| - 0.011 13.5 2.2 0.016 13.0 1.6 1.1 1 0 0 1 1 1 0 HOOK protein zf-IS66 PF13005.2 gi|345006895|ref|YP_004809747.1| - 0.017 15.1 8.8 0.047 13.6 6.1 1.8 1 1 0 1 1 1 0 zinc-finger binding domain of transposase IS66 HALZ PF02183.13 gi|345006895|ref|YP_004809747.1| - 0.033 13.8 5.2 0.094 12.4 3.6 1.8 1 0 0 1 1 1 0 Homeobox associated leucine zipper FlaC_arch PF05377.6 gi|345006895|ref|YP_004809747.1| - 0.035 13.9 2.8 0.079 12.8 2.0 1.6 1 0 0 1 1 1 0 Flagella accessory protein C (FlaC) ERM PF00769.14 gi|345006895|ref|YP_004809747.1| - 0.049 13.1 6.2 0.11 11.9 4.3 1.5 1 0 0 1 1 1 0 Ezrin/radixin/moesin family Fmp27_WPPW PF10359.4 gi|345006895|ref|YP_004809747.1| - 0.057 11.8 1.7 0.078 11.3 1.2 1.1 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain IncA PF04156.9 gi|345006895|ref|YP_004809747.1| - 0.059 12.9 6.1 0.12 11.9 4.2 1.5 1 0 0 1 1 1 0 IncA protein GAS PF13851.1 gi|345006895|ref|YP_004809747.1| - 0.071 12.3 5.1 0.13 11.4 3.5 1.3 1 0 0 1 1 1 0 Growth-arrest specific micro-tubule binding V_ATPase_I PF01496.14 gi|345006895|ref|YP_004809747.1| - 0.081 10.7 2.2 0.1 10.4 1.5 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family DUF1875 PF08961.5 gi|345006895|ref|YP_004809747.1| - 0.099 11.9 3.5 0.17 11.1 2.4 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1875) SpoVR PF04293.8 gi|345006895|ref|YP_004809747.1| - 0.12 10.7 4.7 0.18 10.1 3.2 1.2 1 0 0 1 1 1 0 SpoVR like protein NUDE_C PF04880.8 gi|345006895|ref|YP_004809747.1| - 0.16 12.3 3.2 0.3 11.4 2.2 1.4 1 0 0 1 1 1 0 NUDE protein, C-terminal conserved region TMF_DNA_bd PF12329.3 gi|345006895|ref|YP_004809747.1| - 0.19 11.5 8.9 0.46 10.3 6.2 1.5 1 0 0 1 1 1 0 TATA element modulatory factor 1 DNA binding Shugoshin_N PF07558.6 gi|345006895|ref|YP_004809747.1| - 0.33 10.7 5.9 0.15 11.8 1.9 2.0 1 1 0 1 1 1 0 Shugoshin N-terminal coiled-coil region Atg14 PF10186.4 gi|345006895|ref|YP_004809747.1| - 0.36 9.7 3.5 0.66 8.8 2.5 1.4 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 DivIC PF04977.10 gi|345006895|ref|YP_004809747.1| - 0.36 10.3 8.3 0.86 9.1 5.4 1.8 1 1 0 1 1 1 0 Septum formation initiator Daxx PF03344.10 gi|345006895|ref|YP_004809747.1| - 0.4 9.1 6.8 0.6 8.5 4.7 1.2 1 0 0 1 1 1 0 Daxx Family Sipho_Gp157 PF05565.6 gi|345006895|ref|YP_004809747.1| - 0.45 10.0 3.1 0.72 9.4 2.1 1.2 1 0 0 1 1 1 0 Siphovirus Gp157 Synaptobrevin PF00957.16 gi|345006895|ref|YP_004809747.1| - 0.46 10.1 2.2 0.84 9.2 1.5 1.3 1 0 0 1 1 1 0 Synaptobrevin ADIP PF11559.3 gi|345006895|ref|YP_004809747.1| - 0.56 10.0 7.1 1.2 9.0 4.9 1.5 1 0 0 1 1 1 0 Afadin- and alpha -actinin-Binding DUF2205 PF10224.4 gi|345006895|ref|YP_004809747.1| - 0.6 9.7 6.0 1.2 8.7 4.2 1.4 1 0 0 1 1 1 0 Predicted coiled-coil protein (DUF2205) TBPIP PF07106.8 gi|345006895|ref|YP_004809747.1| - 0.73 9.3 5.0 0.41 10.1 2.0 1.7 2 0 0 2 2 1 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) EMP24_GP25L PF01105.19 gi|345006895|ref|YP_004809747.1| - 0.82 9.3 6.0 6.1 6.5 2.9 2.1 2 0 0 2 2 2 0 emp24/gp25L/p24 family/GOLD Prefoldin_2 PF01920.15 gi|345006895|ref|YP_004809747.1| - 0.85 9.4 8.1 1.6 8.4 5.6 1.4 1 0 0 1 1 1 0 Prefoldin subunit bZIP_2 PF07716.10 gi|345006895|ref|YP_004809747.1| - 0.86 9.4 14.5 0.8 9.5 6.4 2.6 1 1 1 2 2 2 0 Basic region leucine zipper APG6 PF04111.7 gi|345006895|ref|YP_004809747.1| - 2.2 7.2 7.1 3.5 6.5 4.9 1.2 1 0 0 1 1 1 0 Autophagy protein Apg6 NYD-SP28_assoc PF14775.1 gi|345006895|ref|YP_004809747.1| - 3.1 7.5 9.2 5.8 6.6 5.2 2.3 1 1 1 2 2 2 0 Sperm tail C-terminal domain TSC22 PF01166.13 gi|345006895|ref|YP_004809747.1| - 3.5 7.6 14.5 28 4.7 8.0 3.2 2 1 0 2 2 2 0 TSC-22/dip/bun family DDE_Tnp_1 PF01609.16 gi|345006897|ref|YP_004809749.1| - 0.01 15.4 0.1 0.044 13.3 0.1 2.0 1 1 0 1 1 1 0 Transposase DDE domain Methyltransf_26 PF13659.1 gi|345006898|ref|YP_004809750.1| - 3.7e-13 49.5 0.0 8e-09 35.5 0.0 2.7 2 1 0 2 2 2 2 Methyltransferase domain Eco57I PF07669.6 gi|345006898|ref|YP_004809750.1| - 3.2e-09 37.1 0.0 1.3e-08 35.1 0.0 2.0 1 0 0 1 1 1 1 Eco57I restriction-modification methylase N6_Mtase PF02384.11 gi|345006898|ref|YP_004809750.1| - 1.3e-08 34.2 0.0 0.12 11.3 0.0 3.5 3 0 0 3 3 3 3 N-6 DNA Methylase UPF0020 PF01170.13 gi|345006898|ref|YP_004809750.1| - 0.0024 17.4 0.0 1.4 8.4 0.0 2.6 2 0 0 2 2 2 2 Putative RNA methylase family UPF0020 TaqI_C PF12950.2 gi|345006898|ref|YP_004809750.1| - 0.06 13.1 0.0 0.18 11.5 0.0 1.8 1 0 0 1 1 1 0 TaqI-like C-terminal specificity domain PLDc_2 PF13091.1 gi|345006899|ref|YP_004809751.1| - 2.2e-15 56.5 0.0 1.3e-14 54.0 0.0 2.3 2 0 0 2 2 2 1 PLD-like domain SNF2_N PF00176.18 gi|345006899|ref|YP_004809751.1| - 6.9e-15 54.6 0.7 9.1e-14 50.9 0.5 2.2 1 1 0 1 1 1 1 SNF2 family N-terminal domain Helicase_C PF00271.26 gi|345006899|ref|YP_004809751.1| - 1.1e-11 44.3 0.6 3.7e-11 42.7 0.0 2.2 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|345006899|ref|YP_004809751.1| - 3.7e-11 43.2 0.8 1.3e-09 38.1 0.0 2.9 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit DUF2075 PF09848.4 gi|345006899|ref|YP_004809751.1| - 0.00036 19.6 0.2 0.0013 17.8 0.0 2.0 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2075) Glycos_transf_1 PF00534.15 gi|345006899|ref|YP_004809751.1| - 0.029 13.7 2.8 0.35 10.2 0.1 2.6 2 0 0 2 2 2 0 Glycosyl transferases group 1 AAA_22 PF13401.1 gi|345006899|ref|YP_004809751.1| - 0.062 13.4 0.0 0.34 11.0 0.0 2.3 1 1 0 1 1 1 0 AAA domain Osmo_CC PF08946.5 gi|345006900|ref|YP_004809752.1| - 0.058 13.4 0.7 0.099 12.6 0.5 1.4 1 0 0 1 1 1 0 Osmosensory transporter coiled coil RNA_POL_M_15KD PF02150.11 gi|345006903|ref|YP_004809755.1| - 0.077 12.6 1.5 0.17 11.6 1.1 1.6 1 0 0 1 1 1 0 RNA polymerases M/15 Kd subunit VWA PF00092.23 gi|345006904|ref|YP_004809756.1| - 1.8e-10 40.8 0.3 2.3e-10 40.4 0.2 1.2 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA_2 PF13519.1 gi|345006904|ref|YP_004809756.1| - 1.5e-08 34.9 3.8 1.6e-08 34.8 2.1 1.5 1 1 0 1 1 1 1 von Willebrand factor type A domain vWA-TerF-like PF10138.4 gi|345006904|ref|YP_004809756.1| - 0.0037 17.1 1.6 0.093 12.5 1.1 2.1 1 1 0 1 1 1 1 vWA found in TerF C terminus VWA_CoxE PF05762.9 gi|345006904|ref|YP_004809756.1| - 0.025 13.7 0.1 0.041 13.0 0.0 1.4 1 0 0 1 1 1 0 VWA domain containing CoxE-like protein DUF2201 PF09967.4 gi|345006904|ref|YP_004809756.1| - 0.041 13.8 0.6 0.69 9.9 0.4 2.3 1 1 0 1 1 1 0 VWA-like domain (DUF2201) Lactamase_B_2 PF12706.2 gi|345006905|ref|YP_004809757.1| - 4.9e-11 42.5 2.4 4.9e-11 42.5 1.6 2.2 2 0 0 2 2 2 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|345006905|ref|YP_004809757.1| - 2e-07 30.8 9.2 5e-07 29.5 6.4 1.7 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily SDA1 PF05285.7 gi|345006905|ref|YP_004809757.1| - 4.3 6.5 17.7 6 6.0 12.3 1.1 1 0 0 1 1 1 0 SDA1 CDK5_activator PF03261.10 gi|345006905|ref|YP_004809757.1| - 5.8 6.1 6.0 9.9 5.3 4.1 1.2 1 0 0 1 1 1 0 Cyclin-dependent kinase 5 activator protein Rrf2 PF02082.15 gi|345006906|ref|YP_004809758.1| - 0.00087 19.3 0.0 0.0012 18.9 0.0 1.1 1 0 0 1 1 1 1 Transcriptional regulator GntR PF00392.16 gi|345006906|ref|YP_004809758.1| - 0.087 12.2 0.0 0.12 11.8 0.0 1.2 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_Crp_2 PF13545.1 gi|345006906|ref|YP_004809758.1| - 0.087 12.6 0.0 0.14 11.9 0.0 1.3 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain DDE_Tnp_1 PF01609.16 gi|345006907|ref|YP_004809759.1| - 0.01 15.4 0.1 0.044 13.3 0.1 2.0 1 1 0 1 1 1 0 Transposase DDE domain CoiA PF06054.6 gi|345006908|ref|YP_004809760.1| - 4.5e-13 48.8 0.0 6e-13 48.4 0.0 1.1 1 0 0 1 1 1 1 Competence protein CoiA-like family Zn_Tnp_IS1 PF03811.8 gi|345006908|ref|YP_004809760.1| - 0.06 12.8 0.1 0.12 11.9 0.1 1.4 1 0 0 1 1 1 0 InsA N-terminal domain HSDR_N_2 PF13588.1 gi|345006909|ref|YP_004809761.1| - 2.5e-08 33.6 0.0 7e-08 32.2 0.0 1.7 1 0 0 1 1 1 1 Type I restriction enzyme R protein N terminus (HSDR_N) HSDR_N PF04313.9 gi|345006909|ref|YP_004809761.1| - 4.7e-06 26.4 2.5 5.4e-06 26.2 0.1 2.1 2 0 0 2 2 2 1 Type I restriction enzyme R protein N terminus (HSDR_N) Reo_sigmaC PF04582.7 gi|345006909|ref|YP_004809761.1| - 0.0019 17.4 0.4 0.0029 16.8 0.3 1.2 1 0 0 1 1 1 1 Reovirus sigma C capsid protein PDDEXK_3 PF13366.1 gi|345006909|ref|YP_004809761.1| - 0.0082 16.1 0.0 0.015 15.3 0.0 1.5 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily AAA_12 PF13087.1 gi|345006911|ref|YP_004809763.1| - 1.4e-37 129.0 0.0 2.7e-37 128.0 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_11 PF13086.1 gi|345006911|ref|YP_004809763.1| - 4.6e-36 124.5 1.8 7.4e-36 123.8 1.2 1.3 1 0 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|345006911|ref|YP_004809763.1| - 3.2e-11 42.8 0.1 2.5e-10 39.9 0.1 2.2 2 0 0 2 2 2 1 Part of AAA domain AAA_30 PF13604.1 gi|345006911|ref|YP_004809763.1| - 6.8e-11 42.1 3.8 2.3e-07 30.5 0.7 2.4 1 1 1 2 2 2 2 AAA domain Viral_helicase1 PF01443.13 gi|345006911|ref|YP_004809763.1| - 2.8e-07 30.3 0.1 0.52 9.7 0.0 3.6 3 0 0 3 3 3 3 Viral (Superfamily 1) RNA helicase Helicase_RecD PF05127.9 gi|345006911|ref|YP_004809763.1| - 1.9e-06 27.6 0.2 0.021 14.4 0.0 2.4 2 0 0 2 2 2 2 Helicase ResIII PF04851.10 gi|345006911|ref|YP_004809763.1| - 0.00014 21.7 0.9 0.0025 17.6 0.6 2.4 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit Spc7 PF08317.6 gi|345006911|ref|YP_004809763.1| - 0.0004 19.1 6.5 0.00067 18.4 4.5 1.2 1 0 0 1 1 1 1 Spc7 kinetochore protein MobB PF03205.9 gi|345006911|ref|YP_004809763.1| - 0.0004 20.0 0.1 0.00089 18.9 0.0 1.6 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_5 PF07728.9 gi|345006911|ref|YP_004809763.1| - 0.00091 18.9 0.0 0.0019 17.9 0.0 1.5 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) UvrD-helicase PF00580.16 gi|345006911|ref|YP_004809763.1| - 0.0011 18.3 3.2 0.0022 17.3 1.5 1.7 1 1 1 2 2 2 1 UvrD/REP helicase N-terminal domain 2-oxoacid_dh PF00198.18 gi|345006911|ref|YP_004809763.1| - 0.0011 18.2 0.0 0.0021 17.3 0.0 1.4 1 0 0 1 1 1 1 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AAA_16 PF13191.1 gi|345006911|ref|YP_004809763.1| - 0.0012 18.8 0.1 0.0045 16.9 0.1 2.0 1 1 0 1 1 1 1 AAA ATPase domain SRP54 PF00448.17 gi|345006911|ref|YP_004809763.1| - 0.0017 17.8 0.2 0.006 16.0 0.0 1.9 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain Arch_ATPase PF01637.13 gi|345006911|ref|YP_004809763.1| - 0.0023 17.6 0.0 0.0049 16.5 0.0 1.5 1 0 0 1 1 1 1 Archaeal ATPase AAA_25 PF13481.1 gi|345006911|ref|YP_004809763.1| - 0.0026 17.2 0.0 0.0064 15.9 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|345006911|ref|YP_004809763.1| - 0.0029 17.7 0.2 0.043 13.9 0.0 2.6 2 1 1 3 3 2 1 AAA domain DZR PF12773.2 gi|345006911|ref|YP_004809763.1| - 0.003 17.3 0.7 0.0065 16.2 0.5 1.5 1 0 0 1 1 1 1 Double zinc ribbon SPX PF03105.14 gi|345006911|ref|YP_004809763.1| - 0.0062 16.3 0.7 0.012 15.3 0.5 1.4 1 0 0 1 1 1 1 SPX domain Zeta_toxin PF06414.7 gi|345006911|ref|YP_004809763.1| - 0.0085 15.2 0.0 0.02 13.9 0.0 1.7 1 0 0 1 1 1 1 Zeta toxin DUF4407 PF14362.1 gi|345006911|ref|YP_004809763.1| - 0.0085 15.0 4.1 0.014 14.3 2.8 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4407) AAA_17 PF13207.1 gi|345006911|ref|YP_004809763.1| - 0.012 16.4 0.0 0.049 14.4 0.0 2.1 1 0 0 1 1 1 0 AAA domain AAA PF00004.24 gi|345006911|ref|YP_004809763.1| - 0.014 15.5 0.1 0.065 13.4 0.1 2.1 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_33 PF13671.1 gi|345006911|ref|YP_004809763.1| - 0.018 14.9 0.0 0.041 13.7 0.0 1.7 1 0 0 1 1 1 0 AAA domain DEAD PF00270.24 gi|345006911|ref|YP_004809763.1| - 0.019 14.4 0.0 0.1 12.0 0.0 2.2 2 0 0 2 2 2 0 DEAD/DEAH box helicase AAA_18 PF13238.1 gi|345006911|ref|YP_004809763.1| - 0.021 15.1 0.1 0.11 12.7 0.1 2.4 1 1 0 1 1 1 0 AAA domain KTI12 PF08433.5 gi|345006911|ref|YP_004809763.1| - 0.048 12.8 1.7 0.096 11.8 0.0 2.2 2 1 1 3 3 2 0 Chromatin associated protein KTI12 DUF2075 PF09848.4 gi|345006911|ref|YP_004809763.1| - 0.056 12.4 2.3 0.38 9.6 0.0 2.2 1 1 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) Atg14 PF10186.4 gi|345006911|ref|YP_004809763.1| - 0.074 11.9 3.4 0.14 11.0 2.3 1.4 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 ABC_tran PF00005.22 gi|345006911|ref|YP_004809763.1| - 0.084 13.1 0.6 0.32 11.2 0.4 2.1 1 1 0 1 1 1 0 ABC transporter DUF4315 PF14193.1 gi|345006911|ref|YP_004809763.1| - 0.094 12.6 2.7 0.13 12.2 1.1 1.8 2 0 0 2 2 1 0 Domain of unknown function (DUF4315) DUF4140 PF13600.1 gi|345006911|ref|YP_004809763.1| - 0.15 12.4 4.4 5.2 7.5 0.1 2.7 2 0 0 2 2 2 0 N-terminal domain of unknown function (DUF4140) DivIC PF04977.10 gi|345006911|ref|YP_004809763.1| - 0.21 11.0 5.5 0.18 11.3 1.5 2.3 1 1 1 2 2 2 0 Septum formation initiator Uds1 PF15456.1 gi|345006911|ref|YP_004809763.1| - 0.21 11.5 4.7 0.54 10.2 3.2 1.6 1 0 0 1 1 1 0 Up-regulated During Septation CENP-Q PF13094.1 gi|345006911|ref|YP_004809763.1| - 0.25 11.3 8.0 2 8.3 0.3 2.5 2 0 0 2 2 2 0 CENP-Q, a CENPA-CAD centromere complex subunit zf-HIT PF04438.11 gi|345006911|ref|YP_004809763.1| - 0.37 10.4 3.3 0.65 9.6 2.3 1.4 1 0 0 1 1 1 0 HIT zinc finger Reo_sigmaC PF04582.7 gi|345006911|ref|YP_004809763.1| - 0.37 9.9 3.6 0.41 9.7 1.6 1.6 2 0 0 2 2 1 0 Reovirus sigma C capsid protein Occludin_ELL PF07303.8 gi|345006911|ref|YP_004809763.1| - 0.65 10.7 2.7 3.2 8.5 0.5 2.4 2 0 0 2 2 2 0 Occludin homology domain zinc_ribbon_2 PF13240.1 gi|345006911|ref|YP_004809763.1| - 0.74 9.3 3.3 1.6 8.2 2.3 1.6 1 0 0 1 1 1 0 zinc-ribbon domain zf-C2H2 PF00096.21 gi|345006911|ref|YP_004809763.1| - 1.7 9.1 4.4 1.1 9.7 0.1 2.7 3 0 0 3 3 2 0 Zinc finger, C2H2 type C1_3 PF07649.7 gi|345006911|ref|YP_004809763.1| - 2 8.5 4.5 3.7 7.6 3.1 1.4 1 0 0 1 1 1 0 C1-like domain IncA PF04156.9 gi|345006911|ref|YP_004809763.1| - 2 7.9 12.4 3.6 7.1 2.5 2.4 1 1 1 2 2 2 0 IncA protein Seryl_tRNA_N PF02403.17 gi|345006911|ref|YP_004809763.1| - 2.8 7.9 7.2 17 5.5 5.0 2.2 1 1 0 1 1 1 0 Seryl-tRNA synthetase N-terminal domain TBPIP PF07106.8 gi|345006911|ref|YP_004809763.1| - 3.5 7.1 8.5 1.7 8.2 4.0 1.7 2 0 0 2 2 2 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) Prefoldin_2 PF01920.15 gi|345006911|ref|YP_004809763.1| - 4.2 7.1 10.2 1.7 8.4 0.8 2.5 2 0 0 2 2 2 0 Prefoldin subunit DDE_Tnp_IS240 PF13610.1 gi|345006912|ref|YP_004809764.1| - 2.4e-27 95.6 0.1 4.3e-27 94.7 0.0 1.4 2 0 0 2 2 2 1 DDE domain rve_3 PF13683.1 gi|345006912|ref|YP_004809764.1| - 2.8e-12 45.9 1.7 3.5e-12 45.6 0.4 1.7 2 0 0 2 2 2 1 Integrase core domain DDE_Tnp_IS66 PF03050.9 gi|345006912|ref|YP_004809764.1| - 0.00055 19.2 0.0 0.0014 17.9 0.0 1.5 1 1 0 1 1 1 1 Transposase IS66 family rve_2 PF13333.1 gi|345006912|ref|YP_004809764.1| - 0.0049 16.9 0.0 0.0092 16.0 0.0 1.5 1 0 0 1 1 1 1 Integrase core domain rve PF00665.21 gi|345006912|ref|YP_004809764.1| - 0.0052 16.8 0.1 0.026 14.6 0.0 2.1 1 1 0 1 1 1 1 Integrase core domain DUF2384 PF09722.5 gi|345006912|ref|YP_004809764.1| - 0.0088 15.8 0.5 4.5 7.2 0.0 2.6 2 0 0 2 2 2 2 Protein of unknown function (DUF2384) CBS PF00571.23 gi|345006913|ref|YP_004809765.1| - 4.3e-07 29.6 0.0 0.00034 20.3 0.0 2.7 2 1 0 2 2 2 2 CBS domain NETI PF14044.1 gi|345006913|ref|YP_004809765.1| - 0.048 13.1 0.0 0.42 10.1 0.0 2.3 2 0 0 2 2 2 0 NETI protein HBS1_N PF08938.5 gi|345006915|ref|YP_004809767.1| - 0.0036 17.4 0.3 0.0039 17.2 0.2 1.1 1 0 0 1 1 1 1 HBS1 N-terminus IRF PF00605.12 gi|345006915|ref|YP_004809767.1| - 0.11 12.2 0.0 0.11 12.2 0.0 1.0 1 0 0 1 1 1 0 Interferon regulatory factor transcription factor ADP_ribosyl_GH PF03747.9 gi|345006916|ref|YP_004809768.1| - 6e-70 236.2 6.0 7e-70 236.0 4.2 1.0 1 0 0 1 1 1 1 ADP-ribosylglycohydrolase Gly-zipper_YMGG PF13441.1 gi|345006916|ref|YP_004809768.1| - 0.073 12.6 4.4 0.36 10.3 2.2 2.4 2 0 0 2 2 2 0 YMGG-like Gly-zipper Gly-zipper_Omp PF13488.1 gi|345006916|ref|YP_004809768.1| - 0.084 12.5 2.2 0.24 11.0 1.0 2.0 2 0 0 2 2 2 0 Glycine zipper Rick_17kDa_Anti PF05433.10 gi|345006916|ref|YP_004809768.1| - 0.33 10.6 4.8 0.14 11.8 1.1 2.0 2 0 0 2 2 2 0 Glycine zipper 2TM domain DDE_Tnp_1 PF01609.16 gi|345006917|ref|YP_004809769.1| - 0.01 15.4 0.1 0.044 13.3 0.1 2.0 1 1 0 1 1 1 0 Transposase DDE domain DDE_Tnp_1 PF01609.16 gi|345006918|ref|YP_004809770.1| - 2e-17 63.4 2.8 3.8e-17 62.5 1.9 1.4 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_3 PF13612.1 gi|345006918|ref|YP_004809770.1| - 0.00037 20.2 0.1 0.0006 19.5 0.1 1.3 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_6 PF13751.1 gi|345006918|ref|YP_004809770.1| - 0.002 18.1 0.4 0.0041 17.1 0.1 1.7 2 0 0 2 2 2 1 Transposase DDE domain DDE_Tnp_1_2 PF13586.1 gi|345006918|ref|YP_004809770.1| - 0.017 15.2 0.6 0.048 13.8 0.4 1.9 1 1 0 1 1 1 0 Transposase DDE domain KaiB PF07689.7 gi|345006918|ref|YP_004809770.1| - 0.12 11.8 0.0 0.2 11.1 0.0 1.4 1 0 0 1 1 1 0 KaiB domain Usp PF00582.21 gi|345006919|ref|YP_004809771.1| - 8.1e-31 107.0 0.2 9.1e-31 106.9 0.1 1.0 1 0 0 1 1 1 1 Universal stress protein family GTP-bdg_N PF13167.1 gi|345006919|ref|YP_004809771.1| - 0.099 12.7 0.0 0.14 12.3 0.0 1.3 1 0 0 1 1 1 0 GTP-binding GTPase N-terminal Aminotran_3 PF00202.16 gi|345006919|ref|YP_004809771.1| - 0.12 11.2 0.0 0.15 10.8 0.0 1.1 1 0 0 1 1 1 0 Aminotransferase class-III DUF4203 PF13886.1 gi|345006920|ref|YP_004809772.1| - 0.1 12.0 6.5 0.1 12.0 4.5 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4203) SKG6 PF08693.5 gi|345006920|ref|YP_004809772.1| - 9 5.7 9.6 0.33 10.2 0.3 2.3 2 0 0 2 2 2 0 Transmembrane alpha-helix domain Gly-zipper_OmpA PF13436.1 gi|345006921|ref|YP_004809773.1| - 0.036 13.7 7.7 0.049 13.2 5.4 1.2 1 0 0 1 1 1 0 Glycine-zipper containing OmpA-like membrane domain DUF3487 PF11990.3 gi|345006921|ref|YP_004809773.1| - 0.24 10.8 2.4 0.31 10.4 1.7 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3487) Gly-zipper_Omp PF13488.1 gi|345006921|ref|YP_004809773.1| - 0.38 10.4 19.5 0.63 9.7 13.5 1.5 1 1 0 1 1 1 0 Glycine zipper ATPase_gene1 PF09527.5 gi|345006921|ref|YP_004809773.1| - 0.96 9.3 12.5 3.3 7.5 8.8 1.7 1 1 0 1 1 1 0 Putative F0F1-ATPase subunit (ATPase_gene1) DUF2273 PF10031.4 gi|345006921|ref|YP_004809773.1| - 2.5 7.7 10.4 3.5 7.2 7.2 1.2 1 0 0 1 1 1 0 Small integral membrane protein (DUF2273) DUF543 PF04418.7 gi|345006921|ref|YP_004809773.1| - 2.8 7.9 7.8 8.8 6.3 5.4 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF543) Gly-zipper_YMGG PF13441.1 gi|345006921|ref|YP_004809773.1| - 4.9 6.7 22.1 14 5.3 15.3 1.7 1 1 0 1 1 1 0 YMGG-like Gly-zipper Peripla_BP_4 PF13407.1 gi|345006922|ref|YP_004809774.1| - 0.027 13.8 0.1 0.039 13.2 0.1 1.2 1 0 0 1 1 1 0 Periplasmic binding protein domain PIN_4 PF13638.1 gi|345006922|ref|YP_004809774.1| - 0.041 13.9 0.0 0.07 13.2 0.0 1.3 1 0 0 1 1 1 0 PIN domain TrmB PF01978.14 gi|345006923|ref|YP_004809775.1| - 5.4e-08 32.4 0.0 1.1e-07 31.4 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.5 gi|345006923|ref|YP_004809775.1| - 3.2e-06 26.6 0.1 1.3e-05 24.7 0.0 2.1 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_20 PF12840.2 gi|345006923|ref|YP_004809775.1| - 0.007 16.1 0.3 0.018 14.8 0.1 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_11 PF08279.7 gi|345006923|ref|YP_004809775.1| - 0.0085 15.7 0.0 0.015 14.9 0.0 1.5 1 0 0 1 1 1 1 HTH domain HTH_38 PF13936.1 gi|345006923|ref|YP_004809775.1| - 0.077 12.5 0.0 0.27 10.8 0.0 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain Penicillinase_R PF03965.11 gi|345006923|ref|YP_004809775.1| - 0.13 12.3 0.0 0.23 11.5 0.0 1.4 1 0 0 1 1 1 0 Penicillinase repressor Antitoxin-MazE PF04014.13 gi|345006924|ref|YP_004809776.1| - 0.13 11.9 0.0 0.24 11.1 0.0 1.5 1 1 0 1 1 1 0 Antidote-toxin recognition MazE DUF3268 PF11672.3 gi|345006925|ref|YP_004809777.1| - 0.0073 16.3 1.3 0.017 15.1 0.1 2.0 3 0 0 3 3 3 1 Protein of unknown function (DUF3268) zf-SNAP50_C PF12251.3 gi|345006925|ref|YP_004809777.1| - 0.0081 15.5 0.0 0.011 15.1 0.0 1.1 1 0 0 1 1 1 1 snRNA-activating protein of 50kDa MW C terminal FpoO PF10621.4 gi|345006925|ref|YP_004809777.1| - 0.14 12.2 0.2 0.24 11.4 0.0 1.5 2 0 0 2 2 2 0 F420H2 dehydrogenase subunit FpoO Ribosomal_L32p PF01783.18 gi|345006925|ref|YP_004809777.1| - 0.49 10.6 2.7 5.6 7.2 0.1 2.4 1 1 1 2 2 2 0 Ribosomal L32p protein family Resolvase PF00239.16 gi|345006926|ref|YP_004809778.1| - 4.4e-20 71.9 6.2 5.6e-20 71.6 4.3 1.1 1 0 0 1 1 1 1 Resolvase, N terminal domain Polysacc_deac_1 PF01522.16 gi|345006926|ref|YP_004809778.1| - 0.033 13.8 0.0 0.085 12.4 0.0 1.7 1 1 1 2 2 2 0 Polysaccharide deacetylase HTH_23 PF13384.1 gi|345006926|ref|YP_004809778.1| - 0.041 13.5 0.0 0.14 11.8 0.0 1.9 1 0 0 1 1 1 0 Homeodomain-like domain Trp_repressor PF01371.14 gi|345006926|ref|YP_004809778.1| - 0.12 12.3 0.1 2.9 7.8 0.0 2.3 2 0 0 2 2 2 0 Trp repressor protein OEP PF02321.13 gi|345006926|ref|YP_004809778.1| - 0.18 11.3 1.7 4.1 6.9 0.1 2.4 2 0 0 2 2 2 0 Outer membrane efflux protein AAA_5 PF07728.9 gi|345006929|ref|YP_004809781.1| - 1.1e-17 64.0 0.0 2.3e-17 63.0 0.0 1.6 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA PF00004.24 gi|345006929|ref|YP_004809781.1| - 3.3e-07 30.5 0.0 8.6e-07 29.2 0.0 1.7 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.1 gi|345006929|ref|YP_004809781.1| - 4.6e-07 30.0 0.0 1.1e-06 28.8 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_3 PF07726.6 gi|345006929|ref|YP_004809781.1| - 4.4e-06 26.3 0.0 1.7e-05 24.3 0.0 1.9 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_17 PF13207.1 gi|345006929|ref|YP_004809781.1| - 1.1e-05 26.2 5.4 1.8e-05 25.5 1.1 3.0 2 1 0 2 2 2 1 AAA domain AAA_33 PF13671.1 gi|345006929|ref|YP_004809781.1| - 3.2e-05 23.8 0.0 5.8e-05 22.9 0.0 1.6 1 0 0 1 1 1 1 AAA domain UPF0079 PF02367.12 gi|345006929|ref|YP_004809781.1| - 6.4e-05 22.5 0.0 0.00015 21.3 0.0 1.6 1 0 0 1 1 1 1 Uncharacterised P-loop hydrolase UPF0079 AAA_25 PF13481.1 gi|345006929|ref|YP_004809781.1| - 0.0002 20.8 0.0 0.00052 19.4 0.0 1.7 1 0 0 1 1 1 1 AAA domain AAA_14 PF13173.1 gi|345006929|ref|YP_004809781.1| - 0.00029 20.7 0.0 0.0015 18.4 0.0 2.3 1 1 0 1 1 1 1 AAA domain ABC_tran PF00005.22 gi|345006929|ref|YP_004809781.1| - 0.00039 20.7 0.0 0.0011 19.2 0.0 1.7 1 1 0 1 1 1 1 ABC transporter AAA_18 PF13238.1 gi|345006929|ref|YP_004809781.1| - 0.0008 19.7 1.9 0.0011 19.2 0.2 2.3 2 1 0 2 2 2 1 AAA domain RNA_helicase PF00910.17 gi|345006929|ref|YP_004809781.1| - 0.0018 18.4 0.0 0.0037 17.4 0.0 1.5 1 0 0 1 1 1 1 RNA helicase NACHT PF05729.7 gi|345006929|ref|YP_004809781.1| - 0.0027 17.4 0.2 0.016 14.8 0.0 2.0 2 0 0 2 2 2 1 NACHT domain AAA_24 PF13479.1 gi|345006929|ref|YP_004809781.1| - 0.0036 16.9 1.0 0.0071 15.9 0.7 1.4 1 0 0 1 1 1 1 AAA domain AAA_28 PF13521.1 gi|345006929|ref|YP_004809781.1| - 0.0037 17.2 0.4 0.011 15.7 0.3 1.8 1 0 0 1 1 1 1 AAA domain IPT PF01745.11 gi|345006929|ref|YP_004809781.1| - 0.0045 16.1 0.1 0.0087 15.2 0.1 1.4 1 0 0 1 1 1 1 Isopentenyl transferase AAA_19 PF13245.1 gi|345006929|ref|YP_004809781.1| - 0.0049 16.5 0.1 0.012 15.3 0.1 1.7 1 0 0 1 1 1 1 Part of AAA domain RuvB_N PF05496.7 gi|345006929|ref|YP_004809781.1| - 0.0055 15.7 2.1 0.0072 15.3 0.0 2.1 3 0 0 3 3 3 1 Holliday junction DNA helicase ruvB N-terminus Arch_ATPase PF01637.13 gi|345006929|ref|YP_004809781.1| - 0.0071 16.0 0.1 0.035 13.7 0.0 1.9 2 0 0 2 2 2 1 Archaeal ATPase IstB_IS21 PF01695.12 gi|345006929|ref|YP_004809781.1| - 0.0089 15.4 0.2 0.024 14.0 0.1 1.7 2 0 0 2 2 1 1 IstB-like ATP binding protein Sigma54_activat PF00158.21 gi|345006929|ref|YP_004809781.1| - 0.0093 15.4 0.0 0.03 13.7 0.0 1.8 2 0 0 2 2 2 1 Sigma-54 interaction domain AAA_16 PF13191.1 gi|345006929|ref|YP_004809781.1| - 0.012 15.6 0.5 0.18 11.7 0.0 2.8 3 0 0 3 3 3 0 AAA ATPase domain Mg_chelatase PF01078.16 gi|345006929|ref|YP_004809781.1| - 0.014 14.5 0.0 0.039 13.0 0.0 1.6 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI T2SE PF00437.15 gi|345006929|ref|YP_004809781.1| - 0.018 13.9 0.0 0.03 13.2 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_23 PF13476.1 gi|345006929|ref|YP_004809781.1| - 0.02 15.2 0.1 0.076 13.3 0.0 1.9 2 0 0 2 2 2 0 AAA domain Sigma54_activ_2 PF14532.1 gi|345006929|ref|YP_004809781.1| - 0.027 14.5 0.0 0.055 13.5 0.0 1.4 1 0 0 1 1 1 0 Sigma-54 interaction domain PhoH PF02562.11 gi|345006929|ref|YP_004809781.1| - 0.081 12.1 0.0 0.23 10.6 0.0 1.7 1 0 0 1 1 1 0 PhoH-like protein NB-ARC PF00931.17 gi|345006929|ref|YP_004809781.1| - 0.095 11.5 0.2 0.24 10.2 0.1 1.6 2 0 0 2 2 2 0 NB-ARC domain MobB PF03205.9 gi|345006929|ref|YP_004809781.1| - 0.13 11.9 0.1 0.37 10.4 0.1 1.8 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B McrBC PF10117.4 gi|345006930|ref|YP_004809782.1| - 8.2e-11 41.3 0.0 3.6e-10 39.2 0.0 1.8 1 1 0 1 1 1 1 McrBC 5-methylcytosine restriction system component DUF1934 PF09148.5 gi|345006932|ref|YP_004809784.1| - 0.14 11.8 0.0 0.25 11.0 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1934) TrmB PF01978.14 gi|345006934|ref|YP_004809786.1| - 0.0032 17.1 0.0 0.12 12.0 0.0 2.3 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB FAD_binding_2 PF00890.19 gi|345006934|ref|YP_004809786.1| - 0.039 12.8 0.1 0.044 12.6 0.1 1.1 1 0 0 1 1 1 0 FAD binding domain FaeA PF04703.7 gi|345006934|ref|YP_004809786.1| - 0.11 12.6 0.0 0.27 11.4 0.0 1.6 1 0 0 1 1 1 0 FaeA-like protein DUF1156 PF06634.7 gi|345006936|ref|YP_004809788.1| - 1.7e-12 46.8 0.0 3.4e-12 45.9 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF1156) Methyltransf_26 PF13659.1 gi|345006936|ref|YP_004809788.1| - 1.5e-10 41.1 0.0 9.9e-06 25.5 0.0 2.5 2 0 0 2 2 2 2 Methyltransferase domain UPF0020 PF01170.13 gi|345006936|ref|YP_004809788.1| - 3e-08 33.4 0.0 0.0049 16.4 0.0 2.5 2 0 0 2 2 2 2 Putative RNA methylase family UPF0020 MethyltransfD12 PF02086.10 gi|345006936|ref|YP_004809788.1| - 6.5e-05 22.5 0.2 0.0002 20.8 0.0 1.9 2 0 0 2 2 2 1 D12 class N6 adenine-specific DNA methyltransferase N6_N4_Mtase PF01555.13 gi|345006936|ref|YP_004809788.1| - 0.00017 21.1 0.0 0.026 14.0 0.0 2.3 2 0 0 2 2 2 1 DNA methylase Cons_hypoth95 PF03602.10 gi|345006936|ref|YP_004809788.1| - 0.012 15.0 0.0 5.1 6.4 0.0 2.3 2 0 0 2 2 2 0 Conserved hypothetical protein 95 S_100 PF01023.14 gi|345006936|ref|YP_004809788.1| - 0.13 11.6 0.1 17 4.8 0.1 2.6 2 0 0 2 2 2 0 S-100/ICaBP type calcium binding domain HypA PF01155.14 gi|345006936|ref|YP_004809788.1| - 0.16 11.6 9.1 65 3.2 6.3 3.1 1 1 0 1 1 1 0 Hydrogenase expression/synthesis hypA family TF_Zn_Ribbon PF08271.7 gi|345006936|ref|YP_004809788.1| - 1.9 7.8 13.7 3.9 6.8 3.5 3.4 2 1 0 2 2 2 0 TFIIB zinc-binding Zn_ribbon_recom PF13408.1 gi|345006936|ref|YP_004809788.1| - 2 8.7 10.7 1.5 9.1 4.7 2.7 1 1 0 1 1 1 0 Recombinase zinc beta ribbon domain SprT-like PF10263.4 gi|345006936|ref|YP_004809788.1| - 9.7 5.8 6.8 79 2.8 4.6 2.5 1 1 0 1 1 1 0 SprT-like family NRDE-2 PF08424.5 gi|345006937|ref|YP_004809789.1| - 0.092 11.6 0.0 0.094 11.5 0.0 1.2 1 0 0 1 1 1 0 NRDE-2, necessary for RNA interference hNIFK_binding PF12196.3 gi|345006938|ref|YP_004809790.1| - 0.064 12.6 0.7 0.064 12.6 0.5 1.6 2 0 0 2 2 2 0 FHA Ki67 binding domain of hNIFK DUF499 PF04465.7 gi|345006939|ref|YP_004809791.1| - 9.4e-10 36.7 1.2 6.1e-06 24.1 0.1 2.7 2 1 0 2 2 2 2 Protein of unknown function (DUF499) ECH_C PF13766.1 gi|345006939|ref|YP_004809791.1| - 0.044 13.9 1.5 0.073 13.2 0.1 2.1 2 0 0 2 2 2 0 2-enoyl-CoA Hydratase C-terminal region SNF2_N PF00176.18 gi|345006941|ref|YP_004809793.1| - 6.5e-42 143.3 0.1 1.1e-41 142.6 0.0 1.3 1 0 0 1 1 1 1 SNF2 family N-terminal domain Helicase_C PF00271.26 gi|345006941|ref|YP_004809793.1| - 3.8e-17 61.9 0.0 1.7e-16 59.7 0.0 2.2 1 1 1 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|345006941|ref|YP_004809793.1| - 2e-08 34.3 0.0 5.2e-08 32.9 0.0 1.7 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit DEAD PF00270.24 gi|345006941|ref|YP_004809793.1| - 1.2e-05 24.8 0.1 0.00051 19.5 0.0 2.7 2 2 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C_2 PF13307.1 gi|345006941|ref|YP_004809793.1| - 0.0048 16.8 0.1 0.018 15.0 0.1 2.0 1 1 0 1 1 1 1 Helicase C-terminal domain CoA_binding_2 PF13380.1 gi|345006941|ref|YP_004809793.1| - 0.085 13.0 0.0 0.62 10.2 0.0 2.3 2 0 0 2 2 2 0 CoA binding domain AAA_22 PF13401.1 gi|345006941|ref|YP_004809793.1| - 0.63 10.1 3.4 0.68 10.0 0.1 2.6 2 2 0 2 2 2 0 AAA domain KfrA_N PF11740.3 gi|345006942|ref|YP_004809794.1| - 0.0024 18.3 7.3 0.0024 18.3 5.0 2.6 2 1 0 2 2 2 1 Plasmid replication region DNA-binding N-term DUF3584 PF12128.3 gi|345006942|ref|YP_004809794.1| - 0.0033 14.8 13.7 0.0041 14.5 9.5 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3584) Atg14 PF10186.4 gi|345006942|ref|YP_004809794.1| - 0.0092 14.9 8.4 0.012 14.5 5.9 1.2 1 0 0 1 1 1 1 UV radiation resistance protein and autophagy-related subunit 14 DUF465 PF04325.8 gi|345006942|ref|YP_004809794.1| - 0.036 13.7 7.2 0.11 12.2 1.3 2.8 1 1 1 2 2 2 0 Protein of unknown function (DUF465) TBPIP PF07106.8 gi|345006942|ref|YP_004809794.1| - 0.13 11.7 13.6 0.12 11.9 8.2 1.7 1 1 0 1 1 1 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) Fmp27_WPPW PF10359.4 gi|345006942|ref|YP_004809794.1| - 0.27 9.6 15.0 0.11 10.8 8.4 1.6 1 1 1 2 2 2 0 RNA pol II promoter Fmp27 protein domain DUF342 PF03961.8 gi|345006942|ref|YP_004809794.1| - 0.77 8.1 10.9 1.9 6.7 7.6 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF342) APG6 PF04111.7 gi|345006942|ref|YP_004809794.1| - 0.78 8.7 16.9 1.2 8.0 11.7 1.3 1 0 0 1 1 1 0 Autophagy protein Apg6 bZIP_1 PF00170.16 gi|345006942|ref|YP_004809794.1| - 0.82 9.6 8.3 0.62 10.0 3.6 2.3 1 1 1 2 2 2 0 bZIP transcription factor Prominin PF05478.6 gi|345006942|ref|YP_004809794.1| - 0.88 7.0 5.3 1.2 6.6 3.7 1.1 1 0 0 1 1 1 0 Prominin Cob_adeno_trans PF01923.13 gi|345006942|ref|YP_004809794.1| - 1.9 8.2 6.7 1.3 8.8 2.8 1.9 1 1 1 2 2 2 0 Cobalamin adenosyltransferase Mnd1 PF03962.10 gi|345006942|ref|YP_004809794.1| - 8.8 5.9 18.2 51 3.4 12.6 2.0 1 1 0 1 1 1 0 Mnd1 family Phage_integrase PF00589.17 gi|345006945|ref|YP_004809797.1| - 1.3e-12 47.7 0.0 4.7e-12 45.9 0.0 1.9 2 1 0 2 2 2 1 Phage integrase family Phage_int_SAM_1 PF02899.12 gi|345006945|ref|YP_004809797.1| - 1.3e-05 25.1 6.2 0.0014 18.7 0.8 2.9 2 1 1 3 3 3 2 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_4 PF13495.1 gi|345006945|ref|YP_004809797.1| - 0.00069 19.8 0.2 0.0044 17.3 0.2 2.2 1 1 0 1 1 1 1 Phage integrase, N-terminal SAM-like domain Complex1_LYR_2 PF13233.1 gi|345006945|ref|YP_004809797.1| - 0.084 13.3 0.1 0.2 12.1 0.1 1.6 1 0 0 1 1 1 0 Complex1_LYR-like DDE_Tnp_1 PF01609.16 gi|345006946|ref|YP_004809798.1| - 0.01 15.4 0.1 0.044 13.3 0.1 2.0 1 1 0 1 1 1 0 Transposase DDE domain Arch_ATPase PF01637.13 gi|345006948|ref|YP_004809800.1| - 1.6e-30 106.5 0.0 3.4e-30 105.4 0.0 1.6 1 0 0 1 1 1 1 Archaeal ATPase DUF234 PF03008.9 gi|345006948|ref|YP_004809800.1| - 1.9e-21 76.0 0.1 3.6e-21 75.1 0.1 1.5 1 0 0 1 1 1 1 Archaea bacterial proteins of unknown function AAA_14 PF13173.1 gi|345006948|ref|YP_004809800.1| - 6.9e-09 35.6 0.0 3.1e-08 33.5 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|345006948|ref|YP_004809800.1| - 1e-05 25.7 0.0 3.9e-05 23.8 0.0 1.8 2 0 0 2 2 2 1 AAA domain MarR_2 PF12802.2 gi|345006948|ref|YP_004809800.1| - 0.00022 20.8 0.3 0.0028 17.2 0.0 2.5 3 0 0 3 3 2 1 MarR family AAA_16 PF13191.1 gi|345006948|ref|YP_004809800.1| - 0.0019 18.1 0.0 0.0049 16.8 0.0 1.7 1 1 0 1 1 1 1 AAA ATPase domain HTH_24 PF13412.1 gi|345006948|ref|YP_004809800.1| - 0.0023 17.3 0.1 0.0039 16.5 0.1 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_Crp_2 PF13545.1 gi|345006948|ref|YP_004809800.1| - 0.0069 16.1 0.1 0.013 15.2 0.1 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain TrmB PF01978.14 gi|345006948|ref|YP_004809800.1| - 0.021 14.5 0.0 0.05 13.3 0.0 1.7 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB B-block_TFIIIC PF04182.7 gi|345006948|ref|YP_004809800.1| - 0.021 14.6 0.0 0.047 13.5 0.0 1.6 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC FaeA PF04703.7 gi|345006948|ref|YP_004809800.1| - 0.031 14.4 0.1 0.061 13.4 0.1 1.4 1 0 0 1 1 1 0 FaeA-like protein HTH_20 PF12840.2 gi|345006948|ref|YP_004809800.1| - 0.069 12.9 0.0 0.15 11.8 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_IclR PF09339.5 gi|345006948|ref|YP_004809800.1| - 0.14 11.7 0.0 0.26 10.9 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain Abi PF02517.11 gi|345006949|ref|YP_004809801.1| - 2.9e-11 43.3 4.5 2.9e-11 43.3 3.1 2.5 2 1 0 2 2 2 1 CAAX protease self-immunity PHO4 PF01384.15 gi|345006949|ref|YP_004809801.1| - 0.071 11.7 9.7 0.11 11.0 6.4 1.7 1 1 0 1 1 1 0 Phosphate transporter family ABC_tran PF00005.22 gi|345006951|ref|YP_004809803.1| - 1.5e-29 102.9 0.0 2.1e-29 102.5 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|345006951|ref|YP_004809803.1| - 6.6e-13 49.2 0.0 1.1e-08 35.4 0.0 2.1 1 1 0 2 2 2 2 AAA domain AAA_25 PF13481.1 gi|345006951|ref|YP_004809803.1| - 0.00083 18.8 0.0 0.0013 18.1 0.0 1.4 1 1 0 1 1 1 1 AAA domain AAA_13 PF13166.1 gi|345006951|ref|YP_004809803.1| - 0.038 12.4 0.0 1.7 6.9 0.0 2.1 2 0 0 2 2 2 0 AAA domain SbcCD_C PF13558.1 gi|345006951|ref|YP_004809803.1| - 0.045 13.6 0.0 0.1 12.5 0.0 1.6 1 0 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_23 PF13476.1 gi|345006951|ref|YP_004809803.1| - 0.046 14.0 0.0 0.078 13.2 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.1 gi|345006951|ref|YP_004809803.1| - 0.05 13.7 0.1 0.21 11.7 0.1 2.2 1 1 0 1 1 1 0 AAA domain AAA PF00004.24 gi|345006951|ref|YP_004809803.1| - 0.081 13.1 0.1 0.42 10.8 0.1 2.1 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_33 PF13671.1 gi|345006951|ref|YP_004809803.1| - 0.083 12.7 0.0 0.15 11.9 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.1 gi|345006951|ref|YP_004809803.1| - 0.096 12.6 0.0 0.21 11.5 0.0 1.6 1 1 0 1 1 1 0 AAA ATPase domain AAA_29 PF13555.1 gi|345006951|ref|YP_004809803.1| - 0.096 12.2 0.1 0.18 11.3 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_15 PF13175.1 gi|345006951|ref|YP_004809803.1| - 0.13 11.3 0.0 0.37 9.7 0.0 1.7 2 0 0 2 2 2 0 AAA ATPase domain SRP54 PF00448.17 gi|345006951|ref|YP_004809803.1| - 0.19 11.1 0.8 0.39 10.1 0.6 1.5 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain Abhydrolase_6 PF12697.2 gi|345006953|ref|YP_004809805.1| - 1.1e-16 61.3 0.2 1.5e-15 57.6 0.0 2.1 2 0 0 2 2 2 1 Alpha/beta hydrolase family Abhydrolase_5 PF12695.2 gi|345006953|ref|YP_004809805.1| - 2.6e-16 59.7 0.0 4.7e-16 58.8 0.0 1.5 1 0 0 1 1 1 1 Alpha/beta hydrolase family DLH PF01738.13 gi|345006953|ref|YP_004809805.1| - 3.3e-06 26.5 0.0 0.081 12.1 0.0 2.6 2 1 0 2 2 2 2 Dienelactone hydrolase family Abhydrolase_3 PF07859.8 gi|345006953|ref|YP_004809805.1| - 9.8e-05 22.0 0.2 0.00025 20.7 0.0 1.7 2 0 0 2 2 2 1 alpha/beta hydrolase fold Abhydrolase_1 PF00561.15 gi|345006953|ref|YP_004809805.1| - 0.00016 21.2 0.0 0.00028 20.5 0.0 1.4 1 0 0 1 1 1 1 alpha/beta hydrolase fold PGAP1 PF07819.8 gi|345006953|ref|YP_004809805.1| - 0.0029 17.2 0.0 0.01 15.4 0.0 1.9 3 0 0 3 3 3 1 PGAP1-like protein Hydrolase_4 PF12146.3 gi|345006953|ref|YP_004809805.1| - 0.057 13.2 0.0 0.2 11.5 0.0 2.0 1 1 0 1 1 1 0 Putative lysophospholipase AXE1 PF05448.7 gi|345006953|ref|YP_004809805.1| - 0.059 11.8 0.0 0.73 8.2 0.0 2.1 2 0 0 2 2 2 0 Acetyl xylan esterase (AXE1) Lipase_3 PF01764.20 gi|345006953|ref|YP_004809805.1| - 0.075 12.6 0.0 0.2 11.2 0.0 1.6 2 0 0 2 2 2 0 Lipase (class 3) TAT_signal PF10518.4 gi|345006953|ref|YP_004809805.1| - 0.12 12.4 2.6 0.26 11.3 1.8 1.6 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence DUF4203 PF13886.1 gi|345006954|ref|YP_004809806.1| - 0.00015 21.2 1.0 0.00016 21.1 0.7 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4203) DUF4235 PF14019.1 gi|345006954|ref|YP_004809806.1| - 0.0087 15.8 0.7 3.2 7.6 0.2 2.1 2 0 0 2 2 2 2 Protein of unknown function (DUF4235) Gly-zipper_OmpA PF13436.1 gi|345006954|ref|YP_004809806.1| - 0.01 15.5 0.5 0.01 15.4 0.4 1.2 1 0 0 1 1 1 0 Glycine-zipper containing OmpA-like membrane domain DUF485 PF04341.7 gi|345006954|ref|YP_004809806.1| - 0.011 15.4 0.1 0.011 15.3 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function, DUF485 ABC2_membrane PF01061.19 gi|345006954|ref|YP_004809806.1| - 0.022 13.9 0.4 0.025 13.7 0.2 1.0 1 0 0 1 1 1 0 ABC-2 type transporter FUSC_2 PF13515.1 gi|345006954|ref|YP_004809806.1| - 0.029 14.2 0.4 0.04 13.8 0.3 1.2 1 0 0 1 1 1 0 Fusaric acid resistance protein-like QueT PF06177.6 gi|345006954|ref|YP_004809806.1| - 0.076 12.9 0.8 0.082 12.8 0.5 1.0 1 0 0 1 1 1 0 QueT transporter TraT PF05818.7 gi|345006954|ref|YP_004809806.1| - 0.12 11.7 0.6 0.13 11.7 0.4 1.0 1 0 0 1 1 1 0 Enterobacterial TraT complement resistance protein Gly-zipper_Omp PF13488.1 gi|345006954|ref|YP_004809806.1| - 0.19 11.3 8.9 0.28 10.8 6.2 1.1 1 0 0 1 1 1 0 Glycine zipper DUF441 PF04284.8 gi|345006954|ref|YP_004809806.1| - 0.56 10.0 7.9 2.3 8.1 5.4 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF441) Rick_17kDa_Anti PF05433.10 gi|345006954|ref|YP_004809806.1| - 0.66 9.6 8.9 1.1 9.0 6.2 1.3 1 0 0 1 1 1 0 Glycine zipper 2TM domain DUF1757 PF08560.5 gi|345006954|ref|YP_004809806.1| - 0.88 9.2 3.5 1.4 8.5 2.4 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF1757) FHIPEP PF00771.15 gi|345006954|ref|YP_004809806.1| - 3.1 5.9 5.9 3.4 5.8 4.1 1.0 1 0 0 1 1 1 0 FHIPEP family ABC_tran PF00005.22 gi|345006956|ref|YP_004809808.1| - 1e-27 97.1 0.0 1.4e-27 96.6 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|345006956|ref|YP_004809808.1| - 6.5e-14 52.5 0.1 1.8e-09 37.9 0.0 2.1 1 1 1 2 2 2 2 AAA domain AAA_29 PF13555.1 gi|345006956|ref|YP_004809808.1| - 0.00042 19.7 0.2 0.00078 18.9 0.1 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|345006956|ref|YP_004809808.1| - 0.0022 18.3 0.0 0.0038 17.5 0.0 1.4 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|345006956|ref|YP_004809808.1| - 0.018 14.0 0.0 0.072 12.1 0.0 1.7 2 0 0 2 2 2 0 AAA ATPase domain AAA_13 PF13166.1 gi|345006956|ref|YP_004809808.1| - 0.019 13.4 0.2 3.4 6.0 0.1 2.1 2 0 0 2 2 2 0 AAA domain Mg_chelatase PF01078.16 gi|345006956|ref|YP_004809808.1| - 0.02 14.0 0.0 0.033 13.3 0.0 1.5 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI SbcCD_C PF13558.1 gi|345006956|ref|YP_004809808.1| - 0.033 14.0 0.0 0.056 13.3 0.0 1.4 1 0 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_16 PF13191.1 gi|345006956|ref|YP_004809808.1| - 0.062 13.2 0.0 0.12 12.3 0.0 1.5 1 1 0 1 1 1 0 AAA ATPase domain AAA_30 PF13604.1 gi|345006956|ref|YP_004809808.1| - 0.063 12.8 0.0 0.16 11.5 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.1 gi|345006956|ref|YP_004809808.1| - 0.077 12.8 0.0 0.36 10.7 0.0 2.0 2 0 0 2 2 2 0 AAA domain HTH_3 PF01381.17 gi|345006958|ref|YP_004809810.1| - 1.9e-16 59.6 0.0 2.1e-16 59.4 0.0 1.1 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.2 gi|345006958|ref|YP_004809810.1| - 2.3e-12 46.7 0.0 2.5e-12 46.6 0.0 1.0 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_31 PF13560.1 gi|345006958|ref|YP_004809810.1| - 9.7e-10 38.5 0.0 1.1e-09 38.3 0.0 1.0 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_26 PF13443.1 gi|345006958|ref|YP_004809810.1| - 1.5e-08 34.7 0.0 1.6e-08 34.6 0.0 1.1 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain HTH_24 PF13412.1 gi|345006958|ref|YP_004809810.1| - 0.00011 21.5 0.0 0.00019 20.7 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_25 PF13413.1 gi|345006958|ref|YP_004809810.1| - 0.00017 21.1 0.1 0.00021 20.8 0.1 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.7 gi|345006958|ref|YP_004809810.1| - 0.00017 21.1 0.1 0.0028 17.2 0.1 2.0 2 0 0 2 2 2 1 HTH domain Sigma70_r4 PF04545.11 gi|345006958|ref|YP_004809810.1| - 0.00042 19.5 0.0 0.00096 18.4 0.0 1.6 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_23 PF13384.1 gi|345006958|ref|YP_004809810.1| - 0.0035 16.9 0.0 0.0056 16.2 0.0 1.4 2 0 0 2 2 2 1 Homeodomain-like domain HTH_Crp_2 PF13545.1 gi|345006958|ref|YP_004809810.1| - 0.0035 17.0 0.0 0.0058 16.3 0.0 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain MarR_2 PF12802.2 gi|345006958|ref|YP_004809810.1| - 0.0065 16.1 0.0 0.0099 15.5 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_37 PF13744.1 gi|345006958|ref|YP_004809810.1| - 0.0073 16.0 0.0 0.0073 16.0 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_AsnC-type PF13404.1 gi|345006958|ref|YP_004809810.1| - 0.012 15.1 0.1 0.021 14.3 0.0 1.4 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain CENP-B_N PF04218.8 gi|345006958|ref|YP_004809810.1| - 0.043 13.2 0.1 0.069 12.5 0.0 1.4 1 0 0 1 1 1 0 CENP-B N-terminal DNA-binding domain GntR PF00392.16 gi|345006958|ref|YP_004809810.1| - 0.044 13.2 0.0 0.06 12.7 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family MarR PF01047.17 gi|345006958|ref|YP_004809810.1| - 0.046 13.4 0.0 0.1 12.3 0.0 1.6 2 0 0 2 2 2 0 MarR family Crp PF00325.15 gi|345006958|ref|YP_004809810.1| - 0.052 13.0 0.1 0.095 12.1 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, crp family DUF1323 PF07037.6 gi|345006958|ref|YP_004809810.1| - 0.059 13.5 0.0 0.077 13.1 0.0 1.2 1 0 0 1 1 1 0 Putative transcription regulator (DUF1323) MerR PF00376.18 gi|345006958|ref|YP_004809810.1| - 0.11 12.0 0.0 0.19 11.3 0.0 1.3 1 0 0 1 1 1 0 MerR family regulatory protein HTH_38 PF13936.1 gi|345006958|ref|YP_004809810.1| - 0.11 12.0 0.0 0.16 11.5 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_28 PF13518.1 gi|345006958|ref|YP_004809810.1| - 0.15 12.0 0.1 0.24 11.4 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain MFS_2 PF13347.1 gi|345006959|ref|YP_004809811.1| - 0.014 13.8 3.6 0.018 13.4 2.5 1.3 1 1 0 1 1 1 0 MFS/sugar transport protein DUF3464 PF11947.3 gi|345006959|ref|YP_004809811.1| - 0.063 12.7 3.5 0.12 11.8 2.5 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3464) Bax1-I PF01027.15 gi|345006959|ref|YP_004809811.1| - 0.12 11.9 6.6 0.16 11.5 4.6 1.1 1 0 0 1 1 1 0 Inhibitor of apoptosis-promoting Bax1 SdpI PF13630.1 gi|345006959|ref|YP_004809811.1| - 4.1 7.1 9.1 0.29 10.8 0.2 2.4 1 1 1 2 2 2 0 SdpI/YhfL protein family FA_desaturase PF00487.19 gi|345006959|ref|YP_004809811.1| - 9.5 5.5 7.8 18 4.6 5.4 1.7 1 1 0 1 1 1 0 Fatty acid desaturase PHO4 PF01384.15 gi|345006960|ref|YP_004809812.1| - 0.0075 14.9 3.5 0.0077 14.9 2.4 1.0 1 0 0 1 1 1 1 Phosphate transporter family MHYT PF03707.11 gi|345006960|ref|YP_004809812.1| - 0.034 14.2 2.3 0.037 14.1 1.2 1.4 1 1 0 1 1 1 0 Bacterial signalling protein N terminal repeat ABC2_membrane_3 PF12698.2 gi|345006960|ref|YP_004809812.1| - 3.6 6.5 6.4 3.9 6.4 4.4 1.0 1 0 0 1 1 1 0 ABC-2 family transporter protein DUF4400 PF14348.1 gi|345006960|ref|YP_004809812.1| - 5.1 6.4 6.3 5.8 6.2 4.3 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4400) IncA PF04156.9 gi|345006960|ref|YP_004809812.1| - 5.6 6.5 9.8 6.2 6.3 6.8 1.0 1 0 0 1 1 1 0 IncA protein SdpI PF13630.1 gi|345006960|ref|YP_004809812.1| - 8.5 6.1 6.5 11 5.7 4.5 1.2 1 0 0 1 1 1 0 SdpI/YhfL protein family Phage_integrase PF00589.17 gi|345006961|ref|YP_004809813.1| - 1.3e-12 47.6 0.1 1.2e-11 44.5 0.1 2.1 1 1 0 1 1 1 1 Phage integrase family Phage_int_SAM_1 PF02899.12 gi|345006961|ref|YP_004809813.1| - 7.4e-08 32.4 0.2 6.8e-07 29.3 0.1 2.3 2 0 0 2 2 2 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_4 PF13495.1 gi|345006961|ref|YP_004809813.1| - 3.1e-05 24.1 0.0 0.00011 22.4 0.0 2.0 2 0 0 2 2 2 1 Phage integrase, N-terminal SAM-like domain Sigma_1s PF02454.11 gi|345006961|ref|YP_004809813.1| - 0.042 13.6 0.1 0.11 12.3 0.1 1.7 1 0 0 1 1 1 0 Sigma 1s protein N6_Mtase PF02384.11 gi|345006962|ref|YP_004809814.1| - 3.8e-12 45.9 0.0 6.8e-12 45.0 0.0 1.4 1 0 0 1 1 1 1 N-6 DNA Methylase Eco57I PF07669.6 gi|345006962|ref|YP_004809814.1| - 1.5e-08 34.9 0.0 8.6e-08 32.4 0.0 2.1 2 0 0 2 2 2 1 Eco57I restriction-modification methylase TaqI_C PF12950.2 gi|345006962|ref|YP_004809814.1| - 9.7e-08 31.7 0.0 1.7e-07 31.0 0.0 1.3 1 0 0 1 1 1 1 TaqI-like C-terminal specificity domain Methyltransf_26 PF13659.1 gi|345006962|ref|YP_004809814.1| - 1.9e-07 31.1 0.0 4.3e-07 29.9 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|345006962|ref|YP_004809814.1| - 0.00089 18.8 0.0 0.0019 17.8 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|345006962|ref|YP_004809814.1| - 0.026 14.9 0.0 1.2 9.5 0.0 2.8 2 0 0 2 2 2 0 Methyltransferase domain Imm33 PF15580.1 gi|345006962|ref|YP_004809814.1| - 0.039 13.4 0.0 1.6 8.2 0.0 2.7 2 0 0 2 2 2 0 Immunity protein 33 MTS PF05175.9 gi|345006962|ref|YP_004809814.1| - 0.049 13.0 0.0 0.12 11.7 0.0 1.6 2 0 0 2 2 2 0 Methyltransferase small domain T3SS_LEE_assoc PF13327.1 gi|345006962|ref|YP_004809814.1| - 0.11 12.0 0.0 0.28 10.7 0.0 1.6 1 0 0 1 1 1 0 Type III secretion system subunit UvrD-helicase PF00580.16 gi|345006963|ref|YP_004809815.1| - 2e-56 191.5 0.0 1.9e-27 96.3 0.0 2.4 2 0 0 2 2 2 2 UvrD/REP helicase N-terminal domain UvrD_C PF13361.1 gi|345006963|ref|YP_004809815.1| - 2.7e-34 119.1 0.0 9e-34 117.4 0.0 1.7 2 0 0 2 2 2 1 UvrD-like helicase C-terminal domain PDDEXK_1 PF12705.2 gi|345006963|ref|YP_004809815.1| - 1.6e-33 116.2 1.8 1.6e-33 116.2 1.2 1.9 2 0 0 2 2 2 1 PD-(D/E)XK nuclease superfamily AAA_19 PF13245.1 gi|345006963|ref|YP_004809815.1| - 1.1e-11 44.3 0.0 2.8e-11 42.9 0.0 1.8 1 0 0 1 1 1 1 Part of AAA domain UvrD_C_2 PF13538.1 gi|345006963|ref|YP_004809815.1| - 7.2e-07 29.3 0.0 5.9e-06 26.3 0.0 2.4 1 1 0 1 1 1 1 UvrD-like helicase C-terminal domain AAA_30 PF13604.1 gi|345006963|ref|YP_004809815.1| - 3.4e-06 26.7 0.0 8.3e-05 22.2 0.0 2.4 2 0 0 2 2 2 1 AAA domain AAA_11 PF13086.1 gi|345006963|ref|YP_004809815.1| - 0.011 15.2 0.0 0.025 14.1 0.0 1.4 1 0 0 1 1 1 0 AAA domain DUF2800 PF10926.3 gi|345006963|ref|YP_004809815.1| - 0.021 13.9 0.1 0.074 12.1 0.1 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF2800) Gelsolin PF00626.17 gi|345006963|ref|YP_004809815.1| - 0.055 13.1 0.0 0.14 11.8 0.0 1.6 1 0 0 1 1 1 0 Gelsolin repeat DDE_Tnp_IS240 PF13610.1 gi|345006964|ref|YP_004809816.1| - 2.6e-10 40.3 0.1 4e-10 39.8 0.0 1.3 1 0 0 1 1 1 1 DDE domain DUF3883 PF13020.1 gi|345006965|ref|YP_004809817.1| - 8.3e-07 28.6 0.0 7.2e-06 25.6 0.0 2.1 2 0 0 2 2 2 1 Domain of unknown function (DUF3883) Ribosomal_L21e PF01157.13 gi|345006966|ref|YP_004809818.1| - 0.062 13.1 0.0 0.082 12.7 0.0 1.3 1 1 0 1 1 1 0 Ribosomal protein L21e DUF4596 PF15363.1 gi|345006966|ref|YP_004809818.1| - 0.083 12.8 0.1 0.18 11.7 0.0 1.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4596) DUF87 PF01935.12 gi|345006967|ref|YP_004809819.1| - 7.9e-34 117.4 0.0 1.2e-33 116.8 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function DUF87 AAA_10 PF12846.2 gi|345006967|ref|YP_004809819.1| - 4.2e-19 69.1 0.0 2.6e-17 63.2 0.0 2.1 1 1 0 1 1 1 1 AAA-like domain DUF853 PF05872.7 gi|345006967|ref|YP_004809819.1| - 5.7e-06 24.9 0.0 1.7e-05 23.3 0.0 1.6 2 0 0 2 2 2 1 Bacterial protein of unknown function (DUF853) FtsK_SpoIIIE PF01580.13 gi|345006967|ref|YP_004809819.1| - 0.00065 19.2 0.0 0.0019 17.7 0.0 1.7 2 0 0 2 2 2 1 FtsK/SpoIIIE family TrwB_AAD_bind PF10412.4 gi|345006967|ref|YP_004809819.1| - 0.0029 16.2 0.0 0.022 13.3 0.0 2.0 2 0 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain HAS-barrel PF09378.5 gi|345006967|ref|YP_004809819.1| - 0.047 13.5 0.0 0.11 12.3 0.0 1.7 1 0 0 1 1 1 0 HAS barrel domain ResIII PF04851.10 gi|345006967|ref|YP_004809819.1| - 0.19 11.5 0.0 0.33 10.7 0.0 1.3 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit Antimicrobial10 PF08105.6 gi|345006968|ref|YP_004809820.1| - 0.12 11.9 0.3 2.1 8.0 0.0 2.3 2 0 0 2 2 2 0 Metchnikowin family NurA PF09376.5 gi|345006969|ref|YP_004809821.1| - 3.7e-15 56.0 0.0 4.8e-15 55.7 0.0 1.2 1 0 0 1 1 1 1 NurA domain Polysacc_deac_1 PF01522.16 gi|345006969|ref|YP_004809821.1| - 0.024 14.2 0.0 1.3 8.6 0.0 2.6 2 0 0 2 2 2 0 Polysaccharide deacetylase AAA_23 PF13476.1 gi|345006970|ref|YP_004809822.1| - 2.6e-12 47.4 96.9 1.5e-05 25.4 36.2 7.1 1 1 2 3 3 2 1 AAA domain SMC_N PF02463.14 gi|345006970|ref|YP_004809822.1| - 4.9e-12 45.5 0.0 4.9e-12 45.5 0.0 2.6 2 1 0 3 3 2 1 RecF/RecN/SMC N terminal domain AAA_13 PF13166.1 gi|345006970|ref|YP_004809822.1| - 9.4e-12 44.2 71.4 1.8e-05 23.4 5.9 5.8 3 2 2 5 5 5 5 AAA domain AAA_21 PF13304.1 gi|345006970|ref|YP_004809822.1| - 3.6e-11 43.5 12.9 0.00012 22.1 4.6 4.2 3 1 1 4 4 3 2 AAA domain SbcCD_C PF13558.1 gi|345006970|ref|YP_004809822.1| - 4.1e-07 29.8 0.0 1.2e-06 28.3 0.0 1.8 1 0 0 1 1 1 1 Putative exonuclease SbcCD, C subunit Reo_sigmaC PF04582.7 gi|345006970|ref|YP_004809822.1| - 4.1e-07 29.4 15.3 0.0026 17.0 1.1 4.7 3 1 1 4 4 4 3 Reovirus sigma C capsid protein AAA_27 PF13514.1 gi|345006970|ref|YP_004809822.1| - 1.1e-05 23.4 99.9 0.012 13.3 0.0 4.3 2 1 1 4 4 4 4 AAA domain AAA_29 PF13555.1 gi|345006970|ref|YP_004809822.1| - 1.2e-05 24.7 0.0 2.4e-05 23.7 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.1 gi|345006970|ref|YP_004809822.1| - 2.3e-05 23.6 0.0 2.3e-05 23.6 0.0 3.7 3 2 0 3 3 2 1 AAA ATPase domain BLOC1_2 PF10046.4 gi|345006970|ref|YP_004809822.1| - 5.5e-05 23.2 60.4 0.049 13.7 2.4 8.6 4 3 3 8 8 8 4 Biogenesis of lysosome-related organelles complex-1 subunit 2 PspA_IM30 PF04012.7 gi|345006970|ref|YP_004809822.1| - 0.00013 21.3 13.0 0.00013 21.3 9.0 5.5 2 2 3 5 5 3 1 PspA/IM30 family DUF812 PF05667.6 gi|345006970|ref|YP_004809822.1| - 0.0011 17.6 13.9 0.0011 17.6 9.6 4.7 1 1 2 4 4 4 2 Protein of unknown function (DUF812) NPV_P10 PF05531.7 gi|345006970|ref|YP_004809822.1| - 0.0011 19.1 24.9 0.18 12.0 0.6 7.7 4 2 4 8 8 8 1 Nucleopolyhedrovirus P10 protein Mnd1 PF03962.10 gi|345006970|ref|YP_004809822.1| - 0.0015 18.2 90.3 0.0018 17.9 7.5 7.3 2 2 4 6 6 5 3 Mnd1 family Dor1 PF04124.7 gi|345006970|ref|YP_004809822.1| - 0.0044 15.5 3.7 0.0044 15.5 2.6 4.5 2 2 2 5 5 5 1 Dor1-like family Rad50_zn_hook PF04423.9 gi|345006970|ref|YP_004809822.1| - 0.0055 16.1 0.6 0.0055 16.1 0.4 7.3 6 1 1 7 7 6 1 Rad50 zinc hook motif ABC_tran PF00005.22 gi|345006970|ref|YP_004809822.1| - 0.01 16.1 19.6 0.014 15.7 0.1 5.4 2 1 0 2 2 1 0 ABC transporter DUF3584 PF12128.3 gi|345006970|ref|YP_004809822.1| - 0.016 12.5 100.3 0.05 10.9 27.4 4.6 3 2 1 4 4 4 0 Protein of unknown function (DUF3584) IncA PF04156.9 gi|345006970|ref|YP_004809822.1| - 0.12 11.9 118.3 4.4e+02 0.3 8.8 7.3 1 1 2 3 3 1 0 IncA protein GAS PF13851.1 gi|345006970|ref|YP_004809822.1| - 0.28 10.3 84.4 0.6 9.2 3.2 7.2 1 1 7 8 8 8 0 Growth-arrest specific micro-tubule binding AAA_25 PF13481.1 gi|345006970|ref|YP_004809822.1| - 0.4 10.0 0.0 0.4 10.0 0.0 3.8 4 2 1 5 5 4 0 AAA domain FliJ PF02050.11 gi|345006970|ref|YP_004809822.1| - 0.44 10.6 68.5 0.063 13.3 1.7 6.7 4 3 1 5 5 5 0 Flagellar FliJ protein Spc7 PF08317.6 gi|345006970|ref|YP_004809822.1| - 0.97 8.0 87.1 0.29 9.7 10.1 6.5 1 1 6 7 7 7 0 Spc7 kinetochore protein NYD-SP28_assoc PF14775.1 gi|345006970|ref|YP_004809822.1| - 1.1 8.9 8.3 0.16 11.7 1.0 3.4 3 0 0 3 3 1 0 Sperm tail C-terminal domain Syntaxin_2 PF14523.1 gi|345006970|ref|YP_004809822.1| - 1.2 9.1 17.9 0.13 12.3 0.6 5.2 3 2 1 4 4 4 0 Syntaxin-like protein FtsK_SpoIIIE PF01580.13 gi|345006970|ref|YP_004809822.1| - 1.3 8.4 0.0 1.3 8.4 0.0 4.2 3 2 1 4 4 2 0 FtsK/SpoIIIE family TPR_MLP1_2 PF07926.7 gi|345006970|ref|YP_004809822.1| - 3.1 7.5 95.0 0.16 11.7 19.8 6.7 2 2 3 5 5 3 0 TPR/MLP1/MLP2-like protein Phage_GP20 PF06810.6 gi|345006970|ref|YP_004809822.1| - 3.6 7.0 86.6 0.17 11.3 1.6 8.8 3 2 6 9 9 9 0 Phage minor structural protein GP20 Fib_alpha PF08702.5 gi|345006970|ref|YP_004809822.1| - 6.1 6.9 38.4 2.4 8.2 0.5 6.6 3 2 5 9 9 9 0 Fibrinogen alpha/beta chain family DUF2730 PF10805.3 gi|345006970|ref|YP_004809822.1| - 9.7 5.9 31.8 0.96 9.2 0.5 7.0 3 2 2 6 6 6 0 Protein of unknown function (DUF2730) Metallophos_2 PF12850.2 gi|345006971|ref|YP_004809823.1| - 1.7e-11 44.2 0.8 5.6e-11 42.5 0.2 2.0 2 1 0 2 2 2 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|345006971|ref|YP_004809823.1| - 2.6e-11 43.3 0.1 1.6e-10 40.6 0.0 2.0 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase DEAD PF00270.24 gi|345006972|ref|YP_004809824.1| - 2.9e-29 101.7 0.0 5.9e-29 100.7 0.0 1.5 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|345006972|ref|YP_004809824.1| - 1.7e-09 37.3 0.0 4.3e-09 36.1 0.0 1.7 1 0 0 1 1 1 1 Helicase conserved C-terminal domain DUF2791 PF10923.3 gi|345006973|ref|YP_004809825.1| - 1.5e-159 531.0 0.1 1.7e-159 530.8 0.1 1.0 1 0 0 1 1 1 1 P-loop Domain of unknown function (DUF2791) AAA_16 PF13191.1 gi|345006973|ref|YP_004809825.1| - 3.8e-07 30.2 0.5 9.8e-07 28.9 0.4 1.8 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|345006973|ref|YP_004809825.1| - 5.7e-07 29.7 0.0 0.004 17.2 0.0 2.5 1 1 0 1 1 1 1 AAA domain Sigma54_activ_2 PF14532.1 gi|345006973|ref|YP_004809825.1| - 0.028 14.4 0.0 0.17 11.9 0.0 2.1 2 0 0 2 2 2 0 Sigma-54 interaction domain KAP_NTPase PF07693.9 gi|345006973|ref|YP_004809825.1| - 0.12 11.3 0.0 0.12 11.3 0.0 1.2 1 0 0 1 1 1 0 KAP family P-loop domain DAP3 PF10236.4 gi|345006973|ref|YP_004809825.1| - 0.13 11.1 0.0 0.55 9.1 0.0 1.9 2 0 0 2 2 2 0 Mitochondrial ribosomal death-associated protein 3 AAA_10 PF12846.2 gi|345006973|ref|YP_004809825.1| - 0.19 11.1 1.4 0.89 8.9 0.0 2.3 2 1 1 3 3 3 0 AAA-like domain TerB-N PF13208.1 gi|345006974|ref|YP_004809826.1| - 1.6e-39 135.5 0.0 8.2e-39 133.2 0.0 2.2 2 0 0 2 2 2 1 TerB-N TerB-C PF15615.1 gi|345006974|ref|YP_004809826.1| - 3.8e-31 108.2 9.3 3.8e-31 108.2 6.5 2.4 3 0 0 3 3 3 1 TerB-C domain TM2 PF05154.11 gi|345006974|ref|YP_004809826.1| - 3.3e-16 59.2 7.6 5.2e-16 58.5 5.3 1.3 1 0 0 1 1 1 1 TM2 domain TerB PF05099.8 gi|345006974|ref|YP_004809826.1| - 2.3e-05 24.1 0.1 9.1e-05 22.2 0.0 2.0 2 0 0 2 2 2 1 Tellurite resistance protein TerB DUF91 PF01939.11 gi|345006976|ref|YP_004809828.1| - 3.8e-05 22.9 0.0 6.5e-05 22.1 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function DUF91 DUF1052 PF06319.7 gi|345006976|ref|YP_004809828.1| - 0.031 13.5 0.0 0.05 12.8 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1052) IF2_N PF04760.10 gi|345006976|ref|YP_004809828.1| - 0.096 12.3 0.0 1.3 8.6 0.0 2.4 2 0 0 2 2 2 0 Translation initiation factor IF-2, N-terminal region TrmB PF01978.14 gi|345006978|ref|YP_004809830.1| - 0.00056 19.5 0.0 0.00074 19.1 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|345006978|ref|YP_004809830.1| - 0.0043 16.7 0.0 0.0066 16.0 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.2 gi|345006978|ref|YP_004809830.1| - 0.012 15.3 0.0 0.021 14.6 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain Cyclase_polyket PF04673.7 gi|345006978|ref|YP_004809830.1| - 0.015 15.2 0.0 0.025 14.5 0.0 1.3 1 0 0 1 1 1 0 Polyketide synthesis cyclase MarR PF01047.17 gi|345006978|ref|YP_004809830.1| - 0.017 14.8 0.0 0.027 14.1 0.0 1.4 1 0 0 1 1 1 0 MarR family HTH_45 PF14947.1 gi|345006978|ref|YP_004809830.1| - 0.027 14.2 0.0 0.037 13.8 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn-helix HTH_Crp_2 PF13545.1 gi|345006978|ref|YP_004809830.1| - 0.038 13.7 0.0 0.054 13.2 0.0 1.3 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_11 PF08279.7 gi|345006978|ref|YP_004809830.1| - 0.048 13.3 0.0 0.075 12.6 0.0 1.3 1 0 0 1 1 1 0 HTH domain HTH_3 PF01381.17 gi|345006978|ref|YP_004809830.1| - 0.12 12.2 0.0 0.3 10.9 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix MerR_1 PF13411.1 gi|345006978|ref|YP_004809830.1| - 0.12 12.1 0.0 0.17 11.6 0.0 1.3 1 0 0 1 1 1 0 MerR HTH family regulatory protein Voltage_CLC PF00654.15 gi|345006980|ref|YP_004809832.1| - 0.00017 20.7 4.6 0.00021 20.4 3.2 1.2 1 0 0 1 1 1 1 Voltage gated chloride channel DUF21 PF01595.15 gi|345006980|ref|YP_004809832.1| - 0.15 11.3 2.4 0.16 11.2 1.0 1.5 1 1 0 1 1 1 0 Domain of unknown function DUF21 Lar_restr_allev PF14354.1 gi|345006983|ref|YP_004809835.1| - 0.00032 20.9 0.8 0.00035 20.8 0.6 1.1 1 0 0 1 1 1 1 Restriction alleviation protein Lar UPF0547 PF10571.4 gi|345006983|ref|YP_004809835.1| - 0.0011 18.6 2.2 0.0038 16.8 1.4 1.8 1 1 1 2 2 2 2 Uncharacterised protein family UPF0547 FANCL_C PF11793.3 gi|345006983|ref|YP_004809835.1| - 0.0016 18.3 0.6 0.084 12.8 0.0 2.1 2 0 0 2 2 2 1 FANCL C-terminal domain zf-C3HC4_3 PF13920.1 gi|345006983|ref|YP_004809835.1| - 0.0026 17.4 0.9 0.17 11.6 0.1 2.1 2 0 0 2 2 2 1 Zinc finger, C3HC4 type (RING finger) DZR PF12773.2 gi|345006983|ref|YP_004809835.1| - 0.014 15.2 0.5 0.019 14.7 0.4 1.3 1 1 0 1 1 1 0 Double zinc ribbon zf-Sec23_Sec24 PF04810.10 gi|345006983|ref|YP_004809835.1| - 0.027 14.0 0.6 1.9 8.0 0.1 2.1 2 0 0 2 2 2 0 Sec23/Sec24 zinc finger Zn-ribbon_8 PF09723.5 gi|345006983|ref|YP_004809835.1| - 0.029 14.3 1.1 3.5 7.6 0.0 2.1 2 0 0 2 2 2 0 Zinc ribbon domain zf-FCS PF06467.9 gi|345006983|ref|YP_004809835.1| - 0.038 13.6 0.3 0.052 13.2 0.0 1.4 2 0 0 2 2 1 0 MYM-type Zinc finger with FCS sequence motif CC PF04942.9 gi|345006983|ref|YP_004809835.1| - 0.04 13.8 0.5 7.3 6.5 0.0 2.2 2 0 0 2 2 2 0 CC domain Elf1 PF05129.8 gi|345006983|ref|YP_004809835.1| - 0.068 12.8 0.1 0.08 12.6 0.1 1.2 1 0 0 1 1 1 0 Transcription elongation factor Elf1 like zf-RING_3 PF14369.1 gi|345006983|ref|YP_004809835.1| - 0.087 12.8 1.1 4.8 7.2 0.1 2.1 2 0 0 2 2 2 0 zinc-finger Opy2 PF09463.5 gi|345006983|ref|YP_004809835.1| - 0.089 12.9 2.5 5 7.2 0.1 2.1 2 0 0 2 2 2 0 Opy2 protein zf-piccolo PF05715.8 gi|345006983|ref|YP_004809835.1| - 0.11 12.5 1.4 0.32 11.0 0.9 1.7 1 1 0 1 1 1 0 Piccolo Zn-finger Prok-RING_4 PF14447.1 gi|345006983|ref|YP_004809835.1| - 0.12 11.9 1.3 0.42 10.1 0.1 2.0 2 0 0 2 2 2 0 Prokaryotic RING finger family 4 zf-TFIIB PF13453.1 gi|345006983|ref|YP_004809835.1| - 0.13 11.5 2.0 0.51 9.5 1.4 1.8 1 1 1 2 2 2 0 Transcription factor zinc-finger zinc-ribbons_6 PF07191.7 gi|345006983|ref|YP_004809835.1| - 0.15 11.9 1.4 0.35 10.6 0.9 1.6 1 1 0 1 1 1 0 zinc-ribbons zf-Di19 PF05605.7 gi|345006983|ref|YP_004809835.1| - 0.18 11.9 3.1 0.39 10.8 2.2 1.6 1 1 0 1 1 1 0 Drought induced 19 protein (Di19), zinc-binding zf-H2C2_2 PF13465.1 gi|345006983|ref|YP_004809835.1| - 0.25 11.7 1.0 9.8 6.6 0.1 2.1 2 0 0 2 2 2 0 Zinc-finger double domain DUF329 PF03884.9 gi|345006983|ref|YP_004809835.1| - 0.28 10.7 1.9 9.9 5.8 0.2 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF329) Cys_rich_CPXG PF14255.1 gi|345006983|ref|YP_004809835.1| - 0.42 10.4 3.6 0.78 9.6 2.5 1.5 1 1 0 1 1 1 0 Cysteine-rich CPXCG zf-LITAF-like PF10601.4 gi|345006983|ref|YP_004809835.1| - 0.61 9.9 3.5 2.8 7.8 0.3 2.1 1 1 1 2 2 2 0 LITAF-like zinc ribbon domain Zn_Tnp_IS1 PF03811.8 gi|345006983|ref|YP_004809835.1| - 0.98 8.9 3.4 7.9 6.0 0.1 2.2 2 0 0 2 2 2 0 InsA N-terminal domain zf-RING_4 PF14570.1 gi|345006983|ref|YP_004809835.1| - 1.2 8.7 5.1 25 4.5 0.1 2.1 1 1 1 2 2 2 0 RING/Ubox like zinc-binding domain zf-ribbon_3 PF13248.1 gi|345006983|ref|YP_004809835.1| - 2.5 7.4 5.0 30 3.9 3.7 2.1 1 1 1 2 2 2 0 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|345006984|ref|YP_004809836.1| - 4.3e-06 26.0 0.5 6.2e-06 25.5 0.4 1.2 1 0 0 1 1 1 1 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|345006984|ref|YP_004809836.1| - 7.4e-06 25.0 1.8 1.1e-05 24.4 1.3 1.3 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.2 gi|345006984|ref|YP_004809836.1| - 2.8e-05 23.8 1.4 2.9e-05 23.7 1.0 1.2 1 0 0 1 1 1 1 Double zinc ribbon RNA_POL_M_15KD PF02150.11 gi|345006984|ref|YP_004809836.1| - 0.00035 20.1 3.2 0.00054 19.5 0.2 2.0 1 1 0 2 2 2 1 RNA polymerases M/15 Kd subunit DUF1272 PF06906.6 gi|345006984|ref|YP_004809836.1| - 0.0045 16.7 1.2 0.0055 16.5 0.8 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1272) HypA PF01155.14 gi|345006984|ref|YP_004809836.1| - 0.0072 15.9 1.5 0.0077 15.9 1.0 1.1 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family Zn-ribbon_8 PF09723.5 gi|345006984|ref|YP_004809836.1| - 0.013 15.4 6.2 0.072 13.0 4.3 2.0 1 1 0 1 1 1 0 Zinc ribbon domain Prok-RING_1 PF14446.1 gi|345006984|ref|YP_004809836.1| - 0.019 14.6 3.9 0.019 14.6 2.7 1.6 1 1 1 2 2 2 0 Prokaryotic RING finger family 1 zf-C3HC4_3 PF13920.1 gi|345006984|ref|YP_004809836.1| - 0.02 14.5 2.3 0.071 12.7 1.6 1.8 1 1 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) TFIIS_C PF01096.13 gi|345006984|ref|YP_004809836.1| - 0.027 14.0 1.2 4.2 7.0 0.1 2.3 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) zf-UBR PF02207.15 gi|345006984|ref|YP_004809836.1| - 0.031 13.9 1.0 0.031 13.9 0.7 1.1 1 0 0 1 1 1 0 Putative zinc finger in N-recognin (UBR box) Ribosomal_L37e PF01907.14 gi|345006984|ref|YP_004809836.1| - 0.035 13.9 0.4 0.048 13.4 0.3 1.3 1 0 0 1 1 1 0 Ribosomal protein L37e zf-ISL3 PF14690.1 gi|345006984|ref|YP_004809836.1| - 0.039 13.9 2.3 0.3 11.1 0.0 2.1 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Mu-like_Com PF10122.4 gi|345006984|ref|YP_004809836.1| - 0.05 12.6 1.9 0.38 9.8 0.2 2.0 1 1 1 2 2 2 0 Mu-like prophage protein Com Zn_Tnp_IS1595 PF12760.2 gi|345006984|ref|YP_004809836.1| - 0.071 12.9 4.2 2.1 8.2 0.1 2.1 1 1 1 2 2 2 0 Transposase zinc-ribbon domain OrfB_Zn_ribbon PF07282.6 gi|345006984|ref|YP_004809836.1| - 0.081 12.6 4.7 0.29 10.8 0.4 2.0 1 1 1 2 2 2 0 Putative transposase DNA-binding domain Lar_restr_allev PF14354.1 gi|345006984|ref|YP_004809836.1| - 0.085 13.1 3.3 3.2 8.1 0.1 2.1 1 1 1 2 2 2 0 Restriction alleviation protein Lar RE_MamI PF09567.5 gi|345006984|ref|YP_004809836.1| - 0.1 11.6 0.4 0.096 11.7 0.3 1.0 1 0 0 1 1 1 0 MamI restriction endonuclease zinc_ribbon_5 PF13719.1 gi|345006984|ref|YP_004809836.1| - 0.11 12.1 1.6 3.4 7.3 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain DNA_RNApol_7kD PF03604.8 gi|345006984|ref|YP_004809836.1| - 0.11 11.9 4.0 0.17 11.3 1.8 2.0 2 1 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit zinc_ribbon_4 PF13717.1 gi|345006984|ref|YP_004809836.1| - 0.11 12.1 1.5 5.1 6.8 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-C4_Topoisom PF01396.14 gi|345006984|ref|YP_004809836.1| - 0.15 11.6 1.7 0.44 10.0 0.0 2.2 2 1 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger Nudix_N_2 PF14803.1 gi|345006984|ref|YP_004809836.1| - 0.15 11.7 1.9 9.2 6.0 0.1 2.3 2 0 0 2 2 2 0 Nudix N-terminal NRDD PF13597.1 gi|345006984|ref|YP_004809836.1| - 0.15 10.0 0.5 0.15 10.1 0.3 1.0 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase Rubredoxin PF00301.15 gi|345006984|ref|YP_004809836.1| - 0.18 11.6 4.5 3.4 7.6 0.5 2.1 1 1 1 2 2 2 0 Rubredoxin zf-IS66 PF13005.2 gi|345006984|ref|YP_004809836.1| - 0.2 11.6 4.7 1.2 9.1 0.2 2.3 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 ZZ PF00569.12 gi|345006984|ref|YP_004809836.1| - 0.2 11.2 1.4 7.8 6.1 0.1 2.1 2 0 0 2 2 2 0 Zinc finger, ZZ type CpXC PF14353.1 gi|345006984|ref|YP_004809836.1| - 0.21 11.5 1.5 2.3 8.1 0.0 2.0 1 1 1 2 2 2 0 CpXC protein C1_2 PF03107.11 gi|345006984|ref|YP_004809836.1| - 0.21 11.7 1.4 0.25 11.4 0.1 1.8 2 0 0 2 2 2 0 C1 domain Auto_anti-p27 PF06677.7 gi|345006984|ref|YP_004809836.1| - 0.22 11.2 0.9 2.5 7.9 0.1 2.3 2 0 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zf-RING_3 PF14369.1 gi|345006984|ref|YP_004809836.1| - 0.29 11.1 5.5 0.28 11.1 3.2 1.5 1 1 0 1 1 1 0 zinc-finger YhfH PF14149.1 gi|345006984|ref|YP_004809836.1| - 0.3 10.9 1.9 7.8 6.3 0.1 2.2 1 1 1 2 2 2 0 YhfH-like protein zf-HIT PF04438.11 gi|345006984|ref|YP_004809836.1| - 0.3 10.7 4.1 3.1 7.5 0.3 2.2 2 0 0 2 2 2 0 HIT zinc finger Ogr_Delta PF04606.7 gi|345006984|ref|YP_004809836.1| - 0.37 10.4 0.3 0.37 10.4 0.2 2.2 2 1 0 2 2 2 0 Ogr/Delta-like zinc finger UPF0547 PF10571.4 gi|345006984|ref|YP_004809836.1| - 0.37 10.5 3.5 7.1 6.4 0.4 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 TF_Zn_Ribbon PF08271.7 gi|345006984|ref|YP_004809836.1| - 0.47 9.8 4.9 0.91 8.8 3.4 1.5 1 1 0 1 1 1 0 TFIIB zinc-binding zf-Mss51 PF13824.1 gi|345006984|ref|YP_004809836.1| - 0.49 10.2 3.1 2 8.3 0.1 2.1 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 zf-TFIIB PF13453.1 gi|345006984|ref|YP_004809836.1| - 0.51 9.5 3.0 8.9 5.5 0.4 2.1 2 0 0 2 2 2 0 Transcription factor zinc-finger DUF2688 PF10892.3 gi|345006984|ref|YP_004809836.1| - 0.54 9.9 2.7 1.1 8.9 1.9 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF2688) zf-C2H2_6 PF13912.1 gi|345006984|ref|YP_004809836.1| - 1.6 8.7 5.7 4.7 7.2 0.3 2.6 2 1 1 3 3 3 0 C2H2-type zinc finger PadR PF03551.9 gi|345006986|ref|YP_004809838.1| - 2.7e-15 55.8 0.8 3.5e-15 55.5 0.6 1.2 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_45 PF14947.1 gi|345006986|ref|YP_004809838.1| - 0.0028 17.4 0.1 0.0045 16.7 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DUF1495 PF07381.6 gi|345006986|ref|YP_004809838.1| - 0.014 15.0 0.0 0.024 14.2 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain (DUF1495) HTH_27 PF13463.1 gi|345006986|ref|YP_004809838.1| - 0.029 14.6 0.0 0.038 14.3 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_34 PF13601.1 gi|345006986|ref|YP_004809838.1| - 0.12 12.3 0.0 0.16 11.9 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain CytB6-F_Fe-S PF08802.5 gi|345006988|ref|YP_004809840.1| - 0.0085 16.0 0.2 0.02 14.9 0.1 1.5 1 0 0 1 1 1 1 Cytochrome B6-F complex Fe-S subunit DUF4259 PF14078.1 gi|345006988|ref|YP_004809840.1| - 0.013 16.0 2.1 0.054 13.9 1.5 2.0 1 1 0 1 1 1 0 Domain of unknown function (DUF4259) TAT_signal PF10518.4 gi|345006988|ref|YP_004809840.1| - 0.14 12.2 0.5 0.25 11.4 0.3 1.5 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence DDE_Tnp_1 PF01609.16 gi|345006989|ref|YP_004809841.1| - 0.01 15.4 0.1 0.044 13.3 0.1 2.0 1 1 0 1 1 1 0 Transposase DDE domain GerE PF00196.14 gi|345006991|ref|YP_004809843.1| - 5.2e-05 22.4 0.1 0.00012 21.2 0.0 1.7 2 0 0 2 2 2 1 Bacterial regulatory proteins, luxR family ADP_ribosyl_GH PF03747.9 gi|345006992|ref|YP_004809844.1| - 3.9e-72 243.4 6.4 4.6e-72 243.2 4.4 1.1 1 0 0 1 1 1 1 ADP-ribosylglycohydrolase Actino_peptide PF14408.1 gi|345006992|ref|YP_004809844.1| - 0.079 12.8 1.7 0.2 11.6 1.2 1.7 1 0 0 1 1 1 0 Ribosomally synthesized peptide in actinomycetes Gly-zipper_YMGG PF13441.1 gi|345006992|ref|YP_004809844.1| - 0.31 10.5 5.1 6.9 6.2 1.1 2.6 2 0 0 2 2 2 0 YMGG-like Gly-zipper EFG_II PF14492.1 gi|345006993|ref|YP_004809845.1| - 0.047 13.5 0.2 0.36 10.7 0.1 2.2 2 0 0 2 2 2 0 Elongation Factor G, domain II Sigma70_r4_2 PF08281.7 gi|345006994|ref|YP_004809846.1| - 0.0036 16.7 0.1 0.0054 16.1 0.1 1.2 1 0 0 1 1 1 1 Sigma-70, region 4 DUF3391 PF11871.3 gi|345006994|ref|YP_004809846.1| - 0.0083 16.3 0.0 0.012 15.8 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF3391) DUF134 PF02001.11 gi|345006994|ref|YP_004809846.1| - 0.017 14.9 0.4 0.033 14.0 0.1 1.6 2 0 0 2 2 2 0 Protein of unknown function DUF134 Sigma70_ECF PF07638.6 gi|345006994|ref|YP_004809846.1| - 0.036 13.7 0.0 0.038 13.6 0.0 1.1 1 0 0 1 1 1 0 ECF sigma factor Fe_hyd_lg_C PF02906.9 gi|345006994|ref|YP_004809846.1| - 0.094 11.9 0.1 6 6.0 0.0 2.0 2 0 0 2 2 2 0 Iron only hydrogenase large subunit, C-terminal domain HTH_10 PF04967.7 gi|345006994|ref|YP_004809846.1| - 0.12 11.9 0.0 0.25 10.9 0.0 1.5 1 0 0 1 1 1 0 HTH DNA binding domain MarR_2 PF12802.2 gi|345006996|ref|YP_004809848.1| - 3.1e-07 29.9 0.0 5.2e-07 29.2 0.0 1.5 1 1 0 1 1 1 1 MarR family PaaX PF07848.7 gi|345006996|ref|YP_004809848.1| - 0.00038 20.4 0.0 0.00065 19.6 0.0 1.3 1 0 0 1 1 1 1 PaaX-like protein HTH_20 PF12840.2 gi|345006996|ref|YP_004809848.1| - 0.0015 18.3 0.0 0.0025 17.5 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain Penicillinase_R PF03965.11 gi|345006996|ref|YP_004809848.1| - 0.014 15.5 0.0 0.016 15.2 0.0 1.2 1 0 0 1 1 1 0 Penicillinase repressor MarR PF01047.17 gi|345006996|ref|YP_004809848.1| - 0.014 15.1 0.0 0.028 14.0 0.0 1.5 1 0 0 1 1 1 0 MarR family HTH_11 PF08279.7 gi|345006996|ref|YP_004809848.1| - 0.026 14.1 0.0 0.056 13.0 0.0 1.5 1 0 0 1 1 1 0 HTH domain TrmB PF01978.14 gi|345006996|ref|YP_004809848.1| - 0.028 14.1 0.0 0.055 13.1 0.0 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB DUF4423 PF14394.1 gi|345006996|ref|YP_004809848.1| - 0.029 13.9 0.0 0.043 13.3 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) HTH_24 PF13412.1 gi|345006996|ref|YP_004809848.1| - 0.034 13.5 0.0 0.068 12.5 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Snf7 PF03357.16 gi|345006996|ref|YP_004809848.1| - 0.047 13.0 0.8 0.058 12.7 0.6 1.3 1 0 0 1 1 1 0 Snf7 HTH_27 PF13463.1 gi|345006996|ref|YP_004809848.1| - 0.053 13.8 0.0 0.13 12.6 0.0 1.7 2 0 0 2 2 1 0 Winged helix DNA-binding domain Fe_dep_repress PF01325.14 gi|345006996|ref|YP_004809848.1| - 0.063 13.2 0.0 0.11 12.4 0.0 1.3 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_5 PF01022.15 gi|345006996|ref|YP_004809848.1| - 0.1 12.2 0.0 0.16 11.6 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family Phage_integrase PF00589.17 gi|345006998|ref|YP_004809850.1| - 0.0067 16.1 0.0 0.026 14.1 0.0 1.8 2 0 0 2 2 2 1 Phage integrase family Spore_III_AB PF09548.5 gi|345006998|ref|YP_004809850.1| - 0.13 12.0 0.0 0.23 11.1 0.0 1.3 1 0 0 1 1 1 0 Stage III sporulation protein AB (spore_III_AB) UPF0236 PF06782.6 gi|345006999|ref|YP_004809851.1| - 2.7e-07 29.4 0.0 1e-05 24.2 0.0 2.1 2 0 0 2 2 2 2 Uncharacterised protein family (UPF0236) Transposase_mut PF00872.13 gi|345006999|ref|YP_004809851.1| - 8.9e-05 21.2 0.9 0.041 12.4 0.1 2.5 2 1 0 2 2 2 2 Transposase, Mutator family PGA_cap PF09587.5 gi|345007002|ref|YP_004809854.1| - 4.2e-62 209.7 0.2 1.1e-61 208.3 0.1 1.7 2 0 0 2 2 2 1 Bacterial capsule synthesis protein PGA_cap CarboxypepD_reg PF13620.1 gi|345007002|ref|YP_004809854.1| - 1e-06 28.6 0.3 1e-06 28.6 0.2 2.8 2 0 0 2 2 2 1 Carboxypeptidase regulatory-like domain DUF4480 PF13715.1 gi|345007002|ref|YP_004809854.1| - 0.00036 20.5 0.0 0.0011 18.9 0.0 1.8 1 0 0 1 1 1 1 Domain of unknown function (DUF4480) MG1 PF11974.3 gi|345007002|ref|YP_004809854.1| - 0.026 15.0 1.7 0.12 12.9 0.0 2.7 3 0 0 3 3 3 0 Alpha-2-macroglobulin MG1 domain DUF4198 PF10670.4 gi|345007002|ref|YP_004809854.1| - 0.12 12.4 1.9 0.48 10.3 0.1 2.4 2 1 0 2 2 2 0 Domain of unknown function (DUF4198) Caps_synth_CapC PF14102.1 gi|345007003|ref|YP_004809855.1| - 0.21 11.7 6.1 0.27 11.3 4.2 1.2 1 0 0 1 1 1 0 Capsule biosynthesis CapC DUF485 PF04341.7 gi|345007003|ref|YP_004809855.1| - 2.6 7.8 9.5 2.6 7.8 6.0 1.4 1 1 1 2 2 2 0 Protein of unknown function, DUF485 UPF0236 PF06782.6 gi|345007004|ref|YP_004809856.1| - 2.7e-07 29.4 0.0 1e-05 24.2 0.0 2.1 2 0 0 2 2 2 2 Uncharacterised protein family (UPF0236) Transposase_mut PF00872.13 gi|345007004|ref|YP_004809856.1| - 8.9e-05 21.2 0.9 0.041 12.4 0.1 2.5 2 1 0 2 2 2 2 Transposase, Mutator family HxlR PF01638.12 gi|345007007|ref|YP_004809859.1| - 0.0078 15.8 0.0 0.011 15.3 0.0 1.4 1 1 0 1 1 1 1 HxlR-like helix-turn-helix HTH_5 PF01022.15 gi|345007007|ref|YP_004809859.1| - 0.013 15.1 0.0 0.046 13.4 0.0 1.8 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family Arch_ATPase PF01637.13 gi|345007008|ref|YP_004809860.1| - 1.6e-32 113.0 0.0 3.7e-32 111.9 0.0 1.6 1 1 0 1 1 1 1 Archaeal ATPase DUF234 PF03008.9 gi|345007008|ref|YP_004809860.1| - 3.1e-19 68.9 0.0 6.6e-19 67.9 0.0 1.5 1 0 0 1 1 1 1 Archaea bacterial proteins of unknown function AAA_22 PF13401.1 gi|345007008|ref|YP_004809860.1| - 2.4e-07 30.9 0.0 5e-07 29.9 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_14 PF13173.1 gi|345007008|ref|YP_004809860.1| - 4.1e-07 29.9 0.0 8.1e-07 28.9 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|345007008|ref|YP_004809860.1| - 8.8e-05 22.5 0.1 0.00038 20.5 0.1 2.0 1 1 0 1 1 1 1 AAA ATPase domain MarR_2 PF12802.2 gi|345007008|ref|YP_004809860.1| - 0.00034 20.2 0.0 0.00081 19.0 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|345007008|ref|YP_004809860.1| - 0.0035 16.6 0.1 0.0066 15.8 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.14 gi|345007008|ref|YP_004809860.1| - 0.0076 15.9 0.1 0.017 14.7 0.0 1.7 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.5 gi|345007008|ref|YP_004809860.1| - 0.026 14.1 0.0 0.053 13.1 0.0 1.5 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_Crp_2 PF13545.1 gi|345007008|ref|YP_004809860.1| - 0.069 12.9 0.1 0.14 12.0 0.0 1.4 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_20 PF12840.2 gi|345007008|ref|YP_004809860.1| - 0.12 12.2 0.0 0.27 11.0 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain Miro PF08477.8 gi|345007008|ref|YP_004809860.1| - 0.15 12.5 0.0 0.28 11.6 0.0 1.5 1 0 0 1 1 1 0 Miro-like protein Fe_dep_repress PF01325.14 gi|345007009|ref|YP_004809861.1| - 0.086 12.7 0.0 0.15 12.0 0.0 1.4 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain Anth_synt_I_N PF04715.8 gi|345007009|ref|YP_004809861.1| - 0.11 12.5 0.0 0.19 11.7 0.0 1.5 1 0 0 1 1 1 0 Anthranilate synthase component I, N terminal region HTH_Tnp_1_2 PF13022.1 gi|345007009|ref|YP_004809861.1| - 0.12 12.2 0.0 0.21 11.3 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix of insertion element transposase Nrf1_DNA-bind PF10491.4 gi|345007010|ref|YP_004809862.1| - 0.035 13.2 0.1 0.04 13.0 0.0 1.3 1 0 0 1 1 1 0 NLS-binding and DNA-binding and dimerisation domains of Nrf1 EBV-NA3 PF05009.7 gi|345007012|ref|YP_004809864.1| - 0.031 13.5 0.0 0.046 12.9 0.0 1.2 1 0 0 1 1 1 0 Epstein-Barr virus nuclear antigen 3 (EBNA-3) Phage_integrase PF00589.17 gi|345007013|ref|YP_004809865.1| - 5e-24 84.8 0.0 5.9e-24 84.6 0.0 1.1 1 0 0 1 1 1 1 Phage integrase family DDE_Tnp_1 PF01609.16 gi|345007014|ref|YP_004809866.1| - 0.01 15.4 0.1 0.044 13.3 0.1 2.0 1 1 0 1 1 1 0 Transposase DDE domain DDE_Tnp_IS66 PF03050.9 gi|345007015|ref|YP_004809867.1| - 8.4e-53 179.3 0.1 8.4e-53 179.3 0.1 2.3 2 1 1 3 3 3 1 Transposase IS66 family DUF904 PF06005.7 gi|345007015|ref|YP_004809867.1| - 2.7e-10 40.3 5.7 9e-10 38.7 3.9 1.9 1 0 0 1 1 1 1 Protein of unknown function (DUF904) DUF972 PF06156.8 gi|345007015|ref|YP_004809867.1| - 0.00018 21.8 4.6 0.00052 20.3 3.2 1.7 1 0 0 1 1 1 1 Protein of unknown function (DUF972) CASP_C PF08172.7 gi|345007015|ref|YP_004809867.1| - 0.00025 20.1 2.2 0.00042 19.4 1.5 1.2 1 0 0 1 1 1 1 CASP C terminal bZIP_1 PF00170.16 gi|345007015|ref|YP_004809867.1| - 0.0021 17.9 7.9 0.0043 16.9 5.5 1.5 1 0 0 1 1 1 1 bZIP transcription factor SPX PF03105.14 gi|345007015|ref|YP_004809867.1| - 0.0024 17.7 0.1 0.0035 17.1 0.1 1.2 1 0 0 1 1 1 1 SPX domain Striatin PF08232.7 gi|345007015|ref|YP_004809867.1| - 0.0024 18.1 4.3 0.0051 17.1 3.0 1.5 1 0 0 1 1 1 1 Striatin family Tektin PF03148.9 gi|345007015|ref|YP_004809867.1| - 0.0041 15.7 2.6 0.0067 15.0 1.8 1.2 1 0 0 1 1 1 1 Tektin family DDE_Tnp_IS240 PF13610.1 gi|345007015|ref|YP_004809867.1| - 0.0083 16.1 0.7 0.018 15.0 0.0 1.9 2 1 0 2 2 1 1 DDE domain HOOK PF05622.7 gi|345007015|ref|YP_004809867.1| - 0.011 13.5 2.2 0.016 13.0 1.6 1.1 1 0 0 1 1 1 0 HOOK protein zf-IS66 PF13005.2 gi|345007015|ref|YP_004809867.1| - 0.017 15.1 8.8 0.047 13.6 6.1 1.8 1 1 0 1 1 1 0 zinc-finger binding domain of transposase IS66 HALZ PF02183.13 gi|345007015|ref|YP_004809867.1| - 0.033 13.8 5.2 0.094 12.4 3.6 1.8 1 0 0 1 1 1 0 Homeobox associated leucine zipper FlaC_arch PF05377.6 gi|345007015|ref|YP_004809867.1| - 0.035 13.9 2.8 0.079 12.8 2.0 1.6 1 0 0 1 1 1 0 Flagella accessory protein C (FlaC) ERM PF00769.14 gi|345007015|ref|YP_004809867.1| - 0.049 13.1 6.2 0.11 11.9 4.3 1.5 1 0 0 1 1 1 0 Ezrin/radixin/moesin family Fmp27_WPPW PF10359.4 gi|345007015|ref|YP_004809867.1| - 0.057 11.8 1.7 0.078 11.3 1.2 1.1 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain IncA PF04156.9 gi|345007015|ref|YP_004809867.1| - 0.059 12.9 6.1 0.12 11.9 4.2 1.5 1 0 0 1 1 1 0 IncA protein GAS PF13851.1 gi|345007015|ref|YP_004809867.1| - 0.071 12.3 5.1 0.13 11.4 3.5 1.3 1 0 0 1 1 1 0 Growth-arrest specific micro-tubule binding V_ATPase_I PF01496.14 gi|345007015|ref|YP_004809867.1| - 0.081 10.7 2.2 0.1 10.4 1.5 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family DUF1875 PF08961.5 gi|345007015|ref|YP_004809867.1| - 0.099 11.9 3.5 0.17 11.1 2.4 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1875) SpoVR PF04293.8 gi|345007015|ref|YP_004809867.1| - 0.12 10.7 4.7 0.18 10.1 3.2 1.2 1 0 0 1 1 1 0 SpoVR like protein NUDE_C PF04880.8 gi|345007015|ref|YP_004809867.1| - 0.16 12.3 3.2 0.3 11.4 2.2 1.4 1 0 0 1 1 1 0 NUDE protein, C-terminal conserved region TMF_DNA_bd PF12329.3 gi|345007015|ref|YP_004809867.1| - 0.19 11.5 8.9 0.46 10.3 6.2 1.5 1 0 0 1 1 1 0 TATA element modulatory factor 1 DNA binding Shugoshin_N PF07558.6 gi|345007015|ref|YP_004809867.1| - 0.33 10.7 5.9 0.15 11.8 1.9 2.0 1 1 0 1 1 1 0 Shugoshin N-terminal coiled-coil region Atg14 PF10186.4 gi|345007015|ref|YP_004809867.1| - 0.36 9.7 3.5 0.66 8.8 2.5 1.4 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 DivIC PF04977.10 gi|345007015|ref|YP_004809867.1| - 0.36 10.3 8.3 0.86 9.1 5.4 1.8 1 1 0 1 1 1 0 Septum formation initiator Daxx PF03344.10 gi|345007015|ref|YP_004809867.1| - 0.4 9.1 6.8 0.6 8.5 4.7 1.2 1 0 0 1 1 1 0 Daxx Family Sipho_Gp157 PF05565.6 gi|345007015|ref|YP_004809867.1| - 0.45 10.0 3.1 0.72 9.4 2.1 1.2 1 0 0 1 1 1 0 Siphovirus Gp157 Synaptobrevin PF00957.16 gi|345007015|ref|YP_004809867.1| - 0.46 10.1 2.2 0.84 9.2 1.5 1.3 1 0 0 1 1 1 0 Synaptobrevin ADIP PF11559.3 gi|345007015|ref|YP_004809867.1| - 0.56 10.0 7.1 1.2 9.0 4.9 1.5 1 0 0 1 1 1 0 Afadin- and alpha -actinin-Binding DUF2205 PF10224.4 gi|345007015|ref|YP_004809867.1| - 0.6 9.7 6.0 1.2 8.7 4.2 1.4 1 0 0 1 1 1 0 Predicted coiled-coil protein (DUF2205) TBPIP PF07106.8 gi|345007015|ref|YP_004809867.1| - 0.73 9.3 5.0 0.41 10.1 2.0 1.7 2 0 0 2 2 1 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) EMP24_GP25L PF01105.19 gi|345007015|ref|YP_004809867.1| - 0.82 9.3 6.0 6.1 6.5 2.9 2.1 2 0 0 2 2 2 0 emp24/gp25L/p24 family/GOLD Prefoldin_2 PF01920.15 gi|345007015|ref|YP_004809867.1| - 0.85 9.4 8.1 1.6 8.4 5.6 1.4 1 0 0 1 1 1 0 Prefoldin subunit bZIP_2 PF07716.10 gi|345007015|ref|YP_004809867.1| - 0.86 9.4 14.5 0.8 9.5 6.4 2.6 1 1 1 2 2 2 0 Basic region leucine zipper APG6 PF04111.7 gi|345007015|ref|YP_004809867.1| - 2.2 7.2 7.1 3.5 6.5 4.9 1.2 1 0 0 1 1 1 0 Autophagy protein Apg6 NYD-SP28_assoc PF14775.1 gi|345007015|ref|YP_004809867.1| - 3.1 7.5 9.2 5.8 6.6 5.2 2.3 1 1 1 2 2 2 0 Sperm tail C-terminal domain TSC22 PF01166.13 gi|345007015|ref|YP_004809867.1| - 3.5 7.6 14.5 28 4.7 8.0 3.2 2 1 0 2 2 2 0 TSC-22/dip/bun family PLDc_2 PF13091.1 gi|345007016|ref|YP_004809868.1| - 2.3e-15 56.4 0.0 1.3e-14 54.0 0.0 2.3 2 0 0 2 2 2 1 PLD-like domain SNF2_N PF00176.18 gi|345007016|ref|YP_004809868.1| - 6.6e-15 54.6 0.7 9.1e-14 50.9 0.5 2.2 1 1 0 1 1 1 1 SNF2 family N-terminal domain Helicase_C PF00271.26 gi|345007016|ref|YP_004809868.1| - 8.4e-12 44.7 0.6 2.7e-11 43.1 0.0 2.2 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|345007016|ref|YP_004809868.1| - 2.8e-11 43.5 0.8 1.3e-09 38.1 0.0 3.2 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit DUF2075 PF09848.4 gi|345007016|ref|YP_004809868.1| - 0.00031 19.8 0.2 0.0013 17.8 0.0 2.2 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2075) AAA_22 PF13401.1 gi|345007016|ref|YP_004809868.1| - 0.051 13.7 0.2 0.34 11.0 0.0 2.6 2 1 0 2 2 2 0 AAA domain Osmo_CC PF08946.5 gi|345007017|ref|YP_004809869.1| - 0.058 13.4 0.7 0.099 12.6 0.5 1.4 1 0 0 1 1 1 0 Osmosensory transporter coiled coil FAA_hydrolase PF01557.13 gi|345007019|ref|YP_004809871.1| - 0.081 12.3 0.0 1.6 8.1 0.0 2.2 2 0 0 2 2 2 0 Fumarylacetoacetate (FAA) hydrolase family RNase_H_2 PF13482.1 gi|345007021|ref|YP_004809873.1| - 0.0022 17.8 0.0 0.86 9.3 0.0 2.5 2 1 0 2 2 2 2 RNase_H superfamily DDE_Tnp_1 PF01609.16 gi|345007024|ref|YP_004809876.1| - 0.01 15.4 0.1 0.044 13.3 0.1 2.0 1 1 0 1 1 1 0 Transposase DDE domain DUF3110 PF11360.3 gi|345007025|ref|YP_004809877.1| - 0.044 13.5 0.0 0.06 13.1 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3110) LIM_bind PF01803.11 gi|345007026|ref|YP_004809878.1| - 0.15 11.1 0.0 0.18 10.8 0.0 1.2 1 0 0 1 1 1 0 LIM-domain binding protein DUF1839 PF08893.5 gi|345007028|ref|YP_004809880.1| - 0.1 11.5 0.0 0.11 11.5 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF1839) DDE_Tnp_1 PF01609.16 gi|345007030|ref|YP_004809882.1| - 0.01 15.4 0.1 0.044 13.3 0.1 2.0 1 1 0 1 1 1 0 Transposase DDE domain Suppressor_APC PF11414.3 gi|345007031|ref|YP_004809883.1| - 0.027 14.2 1.2 0.15 11.8 0.1 2.1 2 0 0 2 2 2 0 Adenomatous polyposis coli tumour suppressor protein SlyX PF04102.7 gi|345007031|ref|YP_004809883.1| - 0.027 14.8 0.5 8.3 6.8 0.0 2.4 2 0 0 2 2 2 0 SlyX PDDEXK_1 PF12705.2 gi|345007032|ref|YP_004809884.1| - 3.1e-16 59.5 0.1 6.7e-16 58.4 0.1 1.6 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily UvrD-helicase PF00580.16 gi|345007033|ref|YP_004809885.1| - 4.6e-51 173.9 0.2 1.7e-50 172.1 0.1 1.9 1 1 0 1 1 1 1 UvrD/REP helicase N-terminal domain UvrD_C PF13361.1 gi|345007033|ref|YP_004809885.1| - 7.8e-33 114.3 0.0 1.3e-18 67.5 0.0 2.3 2 0 0 2 2 2 2 UvrD-like helicase C-terminal domain AAA_19 PF13245.1 gi|345007033|ref|YP_004809885.1| - 2.4e-14 52.8 0.0 9.1e-14 50.9 0.0 2.1 1 0 0 1 1 1 1 Part of AAA domain UvrD_C_2 PF13538.1 gi|345007033|ref|YP_004809885.1| - 4.9e-09 36.2 0.1 0.0034 17.4 0.0 3.0 2 0 0 2 2 2 2 UvrD-like helicase C-terminal domain PDDEXK_1 PF12705.2 gi|345007033|ref|YP_004809885.1| - 6.7e-08 32.2 1.5 2e-07 30.6 0.1 2.5 3 1 0 3 3 3 1 PD-(D/E)XK nuclease superfamily AAA_30 PF13604.1 gi|345007033|ref|YP_004809885.1| - 3e-05 23.7 0.0 8.4e-05 22.2 0.0 1.7 2 0 0 2 2 2 1 AAA domain AAA_11 PF13086.1 gi|345007033|ref|YP_004809885.1| - 0.00011 21.9 0.1 0.058 12.9 0.0 2.4 2 0 0 2 2 2 2 AAA domain AAA_12 PF13087.1 gi|345007033|ref|YP_004809885.1| - 0.00068 19.0 0.0 0.067 12.5 0.0 2.7 2 1 0 2 2 2 1 AAA domain Viral_helicase1 PF01443.13 gi|345007033|ref|YP_004809885.1| - 0.0049 16.4 1.2 8.8 5.7 0.1 3.7 4 0 0 4 4 4 1 Viral (Superfamily 1) RNA helicase PhoH PF02562.11 gi|345007033|ref|YP_004809885.1| - 0.019 14.2 0.1 6.1 6.0 0.0 2.4 2 0 0 2 2 2 0 PhoH-like protein AAA_22 PF13401.1 gi|345007033|ref|YP_004809885.1| - 0.15 12.2 0.1 2.6 8.2 0.0 2.8 3 0 0 3 3 3 0 AAA domain DUF1819 PF08849.6 gi|345007035|ref|YP_004809887.1| - 2.6e-07 30.2 0.0 3.8e-07 29.7 0.0 1.1 1 0 0 1 1 1 1 Putative inner membrane protein (DUF1819) ABC_tran PF00005.22 gi|345007036|ref|YP_004809888.1| - 0.054 13.7 0.0 0.29 11.4 0.0 2.2 2 0 0 2 2 2 0 ABC transporter DUF1788 PF08747.6 gi|345007037|ref|YP_004809889.1| - 5.4e-12 45.6 0.0 6.9e-12 45.3 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1788) Bac_DnaA PF00308.13 gi|345007038|ref|YP_004809890.1| - 0.029 14.0 0.1 0.1 12.2 0.0 1.9 2 0 0 2 2 2 0 Bacterial dnaA protein adh_short PF00106.20 gi|345007038|ref|YP_004809890.1| - 1.5 8.7 6.3 0.26 11.1 0.0 2.7 3 0 0 3 3 3 0 short chain dehydrogenase PIN PF01850.16 gi|345007039|ref|YP_004809891.1| - 4e-15 56.1 1.2 4.6e-15 56.0 0.8 1.0 1 0 0 1 1 1 1 PIN domain Antitoxin-MazE PF04014.13 gi|345007040|ref|YP_004809892.1| - 3.7e-05 23.3 0.1 5.1e-05 22.8 0.0 1.3 1 0 0 1 1 1 1 Antidote-toxin recognition MazE Inhibitor_I53 PF11714.3 gi|345007040|ref|YP_004809892.1| - 0.13 12.2 0.6 0.21 11.5 0.3 1.4 1 1 0 1 1 1 0 Thrombin inhibitor Madanin DUF3714 PF12508.3 gi|345007040|ref|YP_004809892.1| - 0.14 11.6 0.0 0.16 11.4 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3714) Methyltransf_26 PF13659.1 gi|345007041|ref|YP_004809893.1| - 1.8e-18 66.6 0.0 7.8e-18 64.6 0.0 2.1 1 1 0 1 1 1 1 Methyltransferase domain N6_Mtase PF02384.11 gi|345007041|ref|YP_004809893.1| - 1.5e-07 30.8 0.0 0.001 18.2 0.0 3.3 2 1 1 3 3 3 2 N-6 DNA Methylase UPF0020 PF01170.13 gi|345007041|ref|YP_004809893.1| - 0.011 15.2 0.0 0.38 10.2 0.0 2.6 2 0 0 2 2 2 0 Putative RNA methylase family UPF0020 Methyltransf_31 PF13847.1 gi|345007041|ref|YP_004809893.1| - 0.041 13.4 0.0 0.19 11.3 0.0 2.1 1 1 0 1 1 1 0 Methyltransferase domain DUF496 PF04363.7 gi|345007041|ref|YP_004809893.1| - 0.043 13.6 0.1 14 5.5 0.0 2.8 2 0 0 2 2 2 0 Protein of unknown function (DUF496) 2-Hacid_dh PF00389.25 gi|345007042|ref|YP_004809894.1| - 0.064 12.7 0.0 0.17 11.3 0.0 1.7 1 1 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain PglZ PF08665.7 gi|345007043|ref|YP_004809895.1| - 1.4e-11 44.3 0.0 3.3e-11 43.1 0.0 1.7 1 0 0 1 1 1 1 PglZ domain SNF2_N PF00176.18 gi|345007044|ref|YP_004809896.1| - 1.4e-25 89.6 0.0 1.6e-23 82.9 0.0 2.3 1 1 0 1 1 1 1 SNF2 family N-terminal domain Helicase_C PF00271.26 gi|345007044|ref|YP_004809896.1| - 1.3e-18 66.6 0.2 4.1e-18 65.0 0.0 2.0 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|345007044|ref|YP_004809896.1| - 5.1e-10 39.4 0.0 1.7e-09 37.7 0.0 1.9 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit DEAD PF00270.24 gi|345007044|ref|YP_004809896.1| - 4e-07 29.6 0.0 1.3e-06 27.9 0.0 1.9 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C_4 PF13871.1 gi|345007044|ref|YP_004809896.1| - 9.2e-07 28.5 0.4 0.00033 20.1 0.0 2.8 2 0 0 2 2 2 2 Helicase_C-like Helicase_C_2 PF13307.1 gi|345007044|ref|YP_004809896.1| - 0.00014 21.8 0.0 0.00049 20.0 0.0 1.9 2 0 0 2 2 2 1 Helicase C-terminal domain DUF2075 PF09848.4 gi|345007044|ref|YP_004809896.1| - 0.0007 18.6 0.5 0.0052 15.7 0.1 2.5 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2075) OmpH PF03938.9 gi|345007044|ref|YP_004809896.1| - 0.87 9.5 10.9 0.28 11.0 1.1 3.6 3 1 0 3 3 3 0 Outer membrane protein (OmpH-like) DUF790 PF05626.6 gi|345007045|ref|YP_004809897.1| - 1.7e-132 441.5 0.0 1.9e-132 441.3 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF790) ResIII PF04851.10 gi|345007046|ref|YP_004809898.1| - 8.8e-23 81.0 0.0 3e-22 79.3 0.0 1.9 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit Helicase_C PF00271.26 gi|345007046|ref|YP_004809898.1| - 1.9e-20 72.4 0.1 1.9e-20 72.4 0.1 1.8 2 0 0 2 2 2 1 Helicase conserved C-terminal domain DEAD PF00270.24 gi|345007046|ref|YP_004809898.1| - 4.6e-11 42.4 0.0 1.1e-10 41.2 0.0 1.6 1 0 0 1 1 1 1 DEAD/DEAH box helicase AAA_22 PF13401.1 gi|345007046|ref|YP_004809898.1| - 0.01 15.9 0.0 0.063 13.4 0.0 2.2 2 1 1 3 3 3 0 AAA domain IstB_IS21 PF01695.12 gi|345007046|ref|YP_004809898.1| - 0.033 13.6 0.0 0.17 11.3 0.0 2.1 2 0 0 2 2 2 0 IstB-like ATP binding protein Helicase_C_2 PF13307.1 gi|345007046|ref|YP_004809898.1| - 0.055 13.4 1.3 0.86 9.5 0.0 3.3 3 1 1 4 4 4 0 Helicase C-terminal domain PRiA4_ORF3 PF07929.6 gi|345007047|ref|YP_004809899.1| - 5e-14 52.0 0.0 1.1e-13 51.0 0.0 1.4 1 1 0 1 1 1 1 Plasmid pRiA4b ORF-3-like protein FtsH_ext PF06480.10 gi|345007048|ref|YP_004809900.1| - 0.058 13.5 0.0 0.095 12.8 0.0 1.3 1 0 0 1 1 1 0 FtsH Extracellular Ribosomal_L40e PF01020.12 gi|345007049|ref|YP_004809901.1| - 0.00014 21.4 5.5 0.00014 21.4 3.8 1.4 2 0 0 2 2 1 1 Ribosomal L40e family C1_1 PF00130.17 gi|345007049|ref|YP_004809901.1| - 0.0021 17.7 2.6 0.0021 17.7 1.8 2.1 1 1 1 2 2 2 1 Phorbol esters/diacylglycerol binding domain (C1 domain) zf-HIT PF04438.11 gi|345007049|ref|YP_004809901.1| - 0.0058 16.2 12.0 2.4 7.8 5.5 3.1 2 1 0 2 2 2 1 HIT zinc finger zf-C3HC4_3 PF13920.1 gi|345007049|ref|YP_004809901.1| - 0.033 13.8 9.6 0.073 12.7 6.7 1.6 1 1 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) DZR PF12773.2 gi|345007049|ref|YP_004809901.1| - 0.048 13.4 11.2 0.14 11.9 1.0 2.4 1 1 1 2 2 2 0 Double zinc ribbon zf-RING_5 PF14634.1 gi|345007049|ref|YP_004809901.1| - 0.066 12.9 11.1 0.1 12.3 7.7 1.4 1 1 0 1 1 1 0 zinc-RING finger domain zf-C3HC4_2 PF13923.1 gi|345007049|ref|YP_004809901.1| - 0.084 12.9 11.9 0.13 12.2 8.2 1.4 1 1 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) zf-UDP PF14569.1 gi|345007049|ref|YP_004809901.1| - 0.24 11.1 4.7 0.29 10.8 3.3 1.2 1 0 0 1 1 1 0 Zinc-binding RING-finger zf-RING_2 PF13639.1 gi|345007049|ref|YP_004809901.1| - 0.32 10.8 8.8 0.44 10.4 6.1 1.3 1 0 0 1 1 1 0 Ring finger domain Zn_Tnp_IS1595 PF12760.2 gi|345007049|ref|YP_004809901.1| - 0.33 10.8 10.8 1.7 8.4 0.0 2.4 2 1 0 2 2 2 0 Transposase zinc-ribbon domain DUF1610 PF07754.6 gi|345007049|ref|YP_004809901.1| - 0.41 10.8 0.6 0.41 10.8 0.4 4.1 3 2 1 3 3 3 0 Domain of unknown function (DUF1610) zf-B_box PF00643.19 gi|345007049|ref|YP_004809901.1| - 0.6 10.0 13.3 0.52 10.2 5.1 2.4 2 1 0 2 2 2 0 B-box zinc finger zf-RING_4 PF14570.1 gi|345007049|ref|YP_004809901.1| - 0.68 9.5 11.3 1 8.9 7.8 1.4 1 1 0 1 1 1 0 RING/Ubox like zinc-binding domain zf-MYND PF01753.13 gi|345007049|ref|YP_004809901.1| - 0.76 9.6 8.0 2.1 8.2 0.7 2.2 2 0 0 2 2 2 0 MYND finger Zn-ribbon_8 PF09723.5 gi|345007049|ref|YP_004809901.1| - 1.2 9.1 15.7 19 5.2 7.2 3.2 2 1 0 2 2 2 0 Zinc ribbon domain FYVE PF01363.16 gi|345007049|ref|YP_004809901.1| - 2.1 8.2 14.0 62 3.5 9.8 2.4 1 1 0 1 1 1 0 FYVE zinc finger PolC_DP2 PF03833.8 gi|345007049|ref|YP_004809901.1| - 2.3 5.7 5.1 2.4 5.7 3.5 1.0 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 DiS_P_DiS PF06750.8 gi|345007049|ref|YP_004809901.1| - 2.4 7.9 4.5 4.2 7.2 3.1 1.5 1 1 0 1 1 1 0 Bacterial Peptidase A24 N-terminal domain zf-FPG_IleRS PF06827.9 gi|345007049|ref|YP_004809901.1| - 2.4 7.8 10.5 10 5.9 2.3 3.1 2 1 0 2 2 2 0 Zinc finger found in FPG and IleRS zf-RING-like PF08746.6 gi|345007049|ref|YP_004809901.1| - 3.2 7.8 9.5 7.1 6.7 6.6 1.6 1 1 0 1 1 1 0 RING-like domain PhnA_Zn_Ribbon PF08274.7 gi|345007049|ref|YP_004809901.1| - 3.6 7.4 0.0 3.6 7.4 0.0 3.2 3 1 0 3 3 3 0 PhnA Zinc-Ribbon zf-H2C2_5 PF13909.1 gi|345007049|ref|YP_004809901.1| - 5.5 7.4 11.8 3.3 8.1 0.2 2.5 2 1 0 2 2 2 0 C2H2-type zinc-finger domain Dynactin_p62 PF05502.8 gi|345007049|ref|YP_004809901.1| - 6.2 5.4 6.7 6.8 5.3 4.6 1.1 1 0 0 1 1 1 0 Dynactin p62 family Nop10p PF04135.7 gi|345007049|ref|YP_004809901.1| - 6.9 6.4 8.2 76 3.1 0.0 2.7 2 1 0 2 2 2 0 Nucleolar RNA-binding protein, Nop10p family FYVE_2 PF02318.11 gi|345007049|ref|YP_004809901.1| - 7.6 6.4 7.6 15 5.5 5.3 1.6 1 1 0 1 1 1 0 FYVE-type zinc finger XPA_N PF01286.13 gi|345007049|ref|YP_004809901.1| - 9.5 5.9 11.6 7.2 6.3 5.3 2.7 2 1 0 2 2 2 0 XPA protein N-terminal zf-dskA_traR PF01258.12 gi|345007049|ref|YP_004809901.1| - 9.7 6.0 12.2 13 5.6 0.0 3.8 2 1 2 4 4 4 0 Prokaryotic dksA/traR C4-type zinc finger TrbC PF04956.8 gi|345007051|ref|YP_004809903.1| - 4.8e-05 23.2 1.0 6.9e-05 22.7 0.7 1.2 1 0 0 1 1 1 1 TrbC/VIRB2 family AARP2CN PF08142.7 gi|345007052|ref|YP_004809904.1| - 0.059 12.9 0.0 0.82 9.2 0.0 2.4 2 0 0 2 2 2 0 AARP2CN (NUC121) domain DUF3558 PF12079.3 gi|345007053|ref|YP_004809905.1| - 0.14 11.8 2.7 0.19 11.3 0.3 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3558) DUF883 PF05957.8 gi|345007054|ref|YP_004809906.1| - 0.27 11.6 3.9 0.74 10.2 2.7 1.7 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF883) AAA_10 PF12846.2 gi|345007055|ref|YP_004809907.1| - 3.8e-40 138.2 0.4 1.2e-39 136.5 0.3 1.9 1 0 0 1 1 1 1 AAA-like domain Zot PF05707.7 gi|345007055|ref|YP_004809907.1| - 0.00017 21.0 0.1 0.016 14.6 0.0 2.3 2 0 0 2 2 2 2 Zonular occludens toxin (Zot) TraG-D_C PF12696.2 gi|345007055|ref|YP_004809907.1| - 0.0004 20.2 0.0 0.00081 19.2 0.0 1.5 1 0 0 1 1 1 1 TraM recognition site of TraD and TraG AAA_22 PF13401.1 gi|345007055|ref|YP_004809907.1| - 0.0013 18.9 0.2 0.49 10.5 0.1 2.7 2 0 0 2 2 2 2 AAA domain Rsa3 PF14615.1 gi|345007056|ref|YP_004809908.1| - 0.084 12.1 0.0 0.18 11.1 0.0 1.5 1 0 0 1 1 1 0 Ribosome-assembly protein 3 AAA_10 PF12846.2 gi|345007057|ref|YP_004809909.1| - 1.3e-21 77.3 0.3 2.6e-21 76.3 0.2 1.4 1 0 0 1 1 1 1 AAA-like domain TrwB_AAD_bind PF10412.4 gi|345007057|ref|YP_004809909.1| - 5.1e-09 35.2 0.0 0.00013 20.7 0.0 2.2 2 0 0 2 2 2 2 Type IV secretion-system coupling protein DNA-binding domain TraG-D_C PF12696.2 gi|345007057|ref|YP_004809909.1| - 6e-08 32.6 0.0 1.3e-07 31.4 0.0 1.6 1 0 0 1 1 1 1 TraM recognition site of TraD and TraG T4SS-DNA_transf PF02534.9 gi|345007057|ref|YP_004809909.1| - 2.6e-05 23.0 0.0 0.0009 17.9 0.1 2.1 2 0 0 2 2 2 1 Type IV secretory system Conjugative DNA transfer FtsK_SpoIIIE PF01580.13 gi|345007057|ref|YP_004809909.1| - 0.0018 17.7 0.0 0.006 16.0 0.0 1.9 1 0 0 1 1 1 1 FtsK/SpoIIIE family Pox_D5 PF03288.11 gi|345007057|ref|YP_004809909.1| - 0.0095 16.1 0.0 0.02 15.1 0.0 1.5 1 0 0 1 1 1 1 Poxvirus D5 protein-like NACHT PF05729.7 gi|345007057|ref|YP_004809909.1| - 0.019 14.6 0.0 0.075 12.6 0.0 1.9 2 0 0 2 2 2 0 NACHT domain DUF87 PF01935.12 gi|345007057|ref|YP_004809909.1| - 0.03 14.1 0.1 0.13 12.0 0.0 2.2 2 1 0 2 2 2 0 Domain of unknown function DUF87 Atg14 PF10186.4 gi|345007058|ref|YP_004809910.1| - 0.0075 15.2 0.1 0.012 14.5 0.1 1.3 1 0 0 1 1 1 1 UV radiation resistance protein and autophagy-related subunit 14 DivIC PF04977.10 gi|345007058|ref|YP_004809910.1| - 0.013 14.9 0.9 0.034 13.6 0.6 1.7 1 0 0 1 1 1 0 Septum formation initiator SlyX PF04102.7 gi|345007058|ref|YP_004809910.1| - 0.023 15.0 2.2 0.045 14.1 0.3 2.3 3 0 0 3 3 3 0 SlyX DUF1192 PF06698.6 gi|345007058|ref|YP_004809910.1| - 0.039 13.7 2.5 0.12 12.2 1.7 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF1192) HSBP1 PF06825.7 gi|345007058|ref|YP_004809910.1| - 0.041 13.4 0.7 0.62 9.6 0.2 2.7 2 1 1 3 3 3 0 Heat shock factor binding protein 1 TMF_DNA_bd PF12329.3 gi|345007058|ref|YP_004809910.1| - 0.041 13.6 2.0 0.087 12.6 1.4 1.5 1 0 0 1 1 1 0 TATA element modulatory factor 1 DNA binding CENP-Q PF13094.1 gi|345007058|ref|YP_004809910.1| - 0.043 13.8 5.5 0.091 12.7 3.8 1.5 1 0 0 1 1 1 0 CENP-Q, a CENPA-CAD centromere complex subunit DUF2205 PF10224.4 gi|345007058|ref|YP_004809910.1| - 0.059 12.9 0.5 0.11 12.0 0.4 1.5 1 0 0 1 1 1 0 Predicted coiled-coil protein (DUF2205) FlgN PF05130.7 gi|345007058|ref|YP_004809910.1| - 0.084 13.1 3.2 0.25 11.5 1.6 2.1 2 0 0 2 2 2 0 FlgN protein DUF1664 PF07889.7 gi|345007058|ref|YP_004809910.1| - 0.093 12.5 0.3 0.19 11.5 0.2 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1664) DUF4279 PF14106.1 gi|345007058|ref|YP_004809910.1| - 0.094 12.5 0.4 24 4.8 0.0 3.3 3 0 0 3 3 3 0 Domain of unknown function (DUF4279) DUF972 PF06156.8 gi|345007058|ref|YP_004809910.1| - 0.12 12.7 0.6 0.3 11.4 0.4 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF972) Prefoldin PF02996.12 gi|345007058|ref|YP_004809910.1| - 0.26 10.9 2.9 0.25 11.0 0.7 1.9 2 0 0 2 2 2 0 Prefoldin subunit Cep57_CLD_2 PF14197.1 gi|345007058|ref|YP_004809910.1| - 0.45 10.4 6.9 1.2 9.1 4.8 1.7 1 0 0 1 1 1 0 Centrosome localisation domain of PPC89 ADIP PF11559.3 gi|345007058|ref|YP_004809910.1| - 0.51 10.2 3.5 0.97 9.3 2.4 1.4 1 0 0 1 1 1 0 Afadin- and alpha -actinin-Binding MarR_2 PF12802.2 gi|345007062|ref|YP_004809914.1| - 8e-07 28.6 0.0 1.1e-06 28.2 0.0 1.3 1 0 0 1 1 1 1 MarR family MarR PF01047.17 gi|345007062|ref|YP_004809914.1| - 0.00042 19.9 0.0 0.00069 19.2 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.5 gi|345007062|ref|YP_004809914.1| - 0.0015 18.0 0.0 0.0022 17.5 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain TrmB PF01978.14 gi|345007062|ref|YP_004809914.1| - 0.0036 16.9 0.0 0.0092 15.6 0.0 1.6 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB Rrf2 PF02082.15 gi|345007062|ref|YP_004809914.1| - 0.0041 17.2 0.0 0.0057 16.7 0.0 1.2 1 0 0 1 1 1 1 Transcriptional regulator HTH_24 PF13412.1 gi|345007062|ref|YP_004809914.1| - 0.0041 16.4 0.0 0.0056 16.0 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.15 gi|345007062|ref|YP_004809914.1| - 0.029 14.0 0.0 0.041 13.5 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_34 PF13601.1 gi|345007062|ref|YP_004809914.1| - 0.031 14.3 0.0 0.055 13.5 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain Sulfolobus_pRN PF05584.6 gi|345007062|ref|YP_004809914.1| - 0.033 14.1 0.0 0.051 13.5 0.0 1.2 1 0 0 1 1 1 0 Sulfolobus plasmid regulatory protein HTH_27 PF13463.1 gi|345007062|ref|YP_004809914.1| - 0.049 13.9 0.0 0.089 13.1 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain PemK PF02452.12 gi|345007063|ref|YP_004809915.1| - 7.6e-07 29.3 0.0 8.5e-07 29.1 0.0 1.0 1 0 0 1 1 1 1 PemK-like protein CENP-X PF09415.5 gi|345007064|ref|YP_004809916.1| - 0.024 14.4 0.0 0.03 14.1 0.0 1.3 1 0 0 1 1 1 0 CENP-S associating Centromere protein X DUF1965 PF09248.5 gi|345007065|ref|YP_004809917.1| - 0.085 12.7 0.1 0.14 12.0 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1965) Herpes_UL20 PF04544.7 gi|345007066|ref|YP_004809918.1| - 0.1 12.4 0.4 0.11 12.3 0.3 1.1 1 0 0 1 1 1 0 Herpesvirus egress protein UL20 CDP-OH_P_tran_2 PF08009.6 gi|345007066|ref|YP_004809918.1| - 0.48 10.2 4.9 1.1 9.0 3.4 1.7 1 1 0 1 1 1 0 CDP-alcohol phosphatidyltransferase 2 NdhL PF10716.4 gi|345007066|ref|YP_004809918.1| - 1.9 8.2 5.3 0.66 9.7 1.1 1.8 1 1 1 2 2 2 0 NADH dehydrogenase transmembrane subunit Polysacc_synt PF01943.12 gi|345007067|ref|YP_004809919.1| - 4.5 6.4 6.9 0.66 9.1 1.3 1.8 2 0 0 2 2 2 0 Polysaccharide biosynthesis protein HTH_Tnp_Tc5 PF03221.11 gi|345007068|ref|YP_004809920.1| - 0.041 13.6 0.4 0.061 13.1 0.2 1.5 1 1 0 1 1 1 0 Tc5 transposase DNA-binding domain McrBC PF10117.4 gi|345007068|ref|YP_004809920.1| - 0.13 11.1 0.0 0.14 11.0 0.0 1.0 1 0 0 1 1 1 0 McrBC 5-methylcytosine restriction system component HTH_20 PF12840.2 gi|345007069|ref|YP_004809921.1| - 2e-05 24.2 0.2 4.5e-05 23.1 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.14 gi|345007069|ref|YP_004809921.1| - 0.00012 21.7 0.0 0.00021 20.9 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB GntR PF00392.16 gi|345007069|ref|YP_004809921.1| - 0.0016 17.8 0.2 0.0045 16.4 0.1 1.8 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family HTH_Crp_2 PF13545.1 gi|345007069|ref|YP_004809921.1| - 0.0062 16.2 0.0 0.014 15.1 0.0 1.7 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_5 PF01022.15 gi|345007069|ref|YP_004809921.1| - 0.008 15.8 0.0 0.013 15.1 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_23 PF13384.1 gi|345007069|ref|YP_004809921.1| - 0.011 15.4 0.0 0.023 14.3 0.0 1.5 1 0 0 1 1 1 0 Homeodomain-like domain MarR_2 PF12802.2 gi|345007069|ref|YP_004809921.1| - 0.011 15.3 0.1 0.02 14.5 0.1 1.4 1 0 0 1 1 1 0 MarR family HTH_36 PF13730.1 gi|345007069|ref|YP_004809921.1| - 0.024 14.7 0.0 0.045 13.8 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain Rrf2 PF02082.15 gi|345007069|ref|YP_004809921.1| - 0.043 13.9 0.0 1.1 9.4 0.0 2.2 2 0 0 2 2 2 0 Transcriptional regulator HTH_11 PF08279.7 gi|345007069|ref|YP_004809921.1| - 0.047 13.3 0.1 0.09 12.4 0.1 1.4 1 0 0 1 1 1 0 HTH domain HTH_IclR PF09339.5 gi|345007069|ref|YP_004809921.1| - 0.073 12.6 0.2 0.14 11.7 0.1 1.5 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_38 PF13936.1 gi|345007069|ref|YP_004809921.1| - 0.11 12.0 0.1 0.2 11.2 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain DUF716 PF04819.7 gi|345007069|ref|YP_004809921.1| - 0.15 11.5 0.0 0.23 10.8 0.0 1.2 1 0 0 1 1 1 0 Family of unknown function (DUF716) DDE_Tnp_IS66 PF03050.9 gi|345007071|ref|YP_004809923.1| - 8.4e-53 179.3 0.1 8.4e-53 179.3 0.1 2.3 2 1 1 3 3 3 1 Transposase IS66 family DUF904 PF06005.7 gi|345007071|ref|YP_004809923.1| - 2.7e-10 40.3 5.7 9e-10 38.7 3.9 1.9 1 0 0 1 1 1 1 Protein of unknown function (DUF904) DUF972 PF06156.8 gi|345007071|ref|YP_004809923.1| - 0.00018 21.8 4.6 0.00052 20.3 3.2 1.7 1 0 0 1 1 1 1 Protein of unknown function (DUF972) CASP_C PF08172.7 gi|345007071|ref|YP_004809923.1| - 0.00025 20.1 2.2 0.00042 19.4 1.5 1.2 1 0 0 1 1 1 1 CASP C terminal bZIP_1 PF00170.16 gi|345007071|ref|YP_004809923.1| - 0.0021 17.9 7.9 0.0043 16.9 5.5 1.5 1 0 0 1 1 1 1 bZIP transcription factor SPX PF03105.14 gi|345007071|ref|YP_004809923.1| - 0.0024 17.7 0.1 0.0035 17.1 0.1 1.2 1 0 0 1 1 1 1 SPX domain Striatin PF08232.7 gi|345007071|ref|YP_004809923.1| - 0.0024 18.1 4.3 0.0051 17.1 3.0 1.5 1 0 0 1 1 1 1 Striatin family Tektin PF03148.9 gi|345007071|ref|YP_004809923.1| - 0.0041 15.7 2.6 0.0067 15.0 1.8 1.2 1 0 0 1 1 1 1 Tektin family DDE_Tnp_IS240 PF13610.1 gi|345007071|ref|YP_004809923.1| - 0.0083 16.1 0.7 0.018 15.0 0.0 1.9 2 1 0 2 2 1 1 DDE domain HOOK PF05622.7 gi|345007071|ref|YP_004809923.1| - 0.011 13.5 2.2 0.016 13.0 1.6 1.1 1 0 0 1 1 1 0 HOOK protein zf-IS66 PF13005.2 gi|345007071|ref|YP_004809923.1| - 0.017 15.1 8.8 0.047 13.6 6.1 1.8 1 1 0 1 1 1 0 zinc-finger binding domain of transposase IS66 HALZ PF02183.13 gi|345007071|ref|YP_004809923.1| - 0.033 13.8 5.2 0.094 12.4 3.6 1.8 1 0 0 1 1 1 0 Homeobox associated leucine zipper FlaC_arch PF05377.6 gi|345007071|ref|YP_004809923.1| - 0.035 13.9 2.8 0.079 12.8 2.0 1.6 1 0 0 1 1 1 0 Flagella accessory protein C (FlaC) ERM PF00769.14 gi|345007071|ref|YP_004809923.1| - 0.049 13.1 6.2 0.11 11.9 4.3 1.5 1 0 0 1 1 1 0 Ezrin/radixin/moesin family Fmp27_WPPW PF10359.4 gi|345007071|ref|YP_004809923.1| - 0.057 11.8 1.7 0.078 11.3 1.2 1.1 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain IncA PF04156.9 gi|345007071|ref|YP_004809923.1| - 0.059 12.9 6.1 0.12 11.9 4.2 1.5 1 0 0 1 1 1 0 IncA protein GAS PF13851.1 gi|345007071|ref|YP_004809923.1| - 0.071 12.3 5.1 0.13 11.4 3.5 1.3 1 0 0 1 1 1 0 Growth-arrest specific micro-tubule binding V_ATPase_I PF01496.14 gi|345007071|ref|YP_004809923.1| - 0.081 10.7 2.2 0.1 10.4 1.5 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family DUF1875 PF08961.5 gi|345007071|ref|YP_004809923.1| - 0.099 11.9 3.5 0.17 11.1 2.4 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1875) SpoVR PF04293.8 gi|345007071|ref|YP_004809923.1| - 0.12 10.7 4.7 0.18 10.1 3.2 1.2 1 0 0 1 1 1 0 SpoVR like protein NUDE_C PF04880.8 gi|345007071|ref|YP_004809923.1| - 0.16 12.3 3.2 0.3 11.4 2.2 1.4 1 0 0 1 1 1 0 NUDE protein, C-terminal conserved region TMF_DNA_bd PF12329.3 gi|345007071|ref|YP_004809923.1| - 0.19 11.5 8.9 0.46 10.3 6.2 1.5 1 0 0 1 1 1 0 TATA element modulatory factor 1 DNA binding Shugoshin_N PF07558.6 gi|345007071|ref|YP_004809923.1| - 0.33 10.7 5.9 0.15 11.8 1.9 2.0 1 1 0 1 1 1 0 Shugoshin N-terminal coiled-coil region Atg14 PF10186.4 gi|345007071|ref|YP_004809923.1| - 0.36 9.7 3.5 0.66 8.8 2.5 1.4 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 DivIC PF04977.10 gi|345007071|ref|YP_004809923.1| - 0.36 10.3 8.3 0.86 9.1 5.4 1.8 1 1 0 1 1 1 0 Septum formation initiator Daxx PF03344.10 gi|345007071|ref|YP_004809923.1| - 0.4 9.1 6.8 0.6 8.5 4.7 1.2 1 0 0 1 1 1 0 Daxx Family Sipho_Gp157 PF05565.6 gi|345007071|ref|YP_004809923.1| - 0.45 10.0 3.1 0.72 9.4 2.1 1.2 1 0 0 1 1 1 0 Siphovirus Gp157 Synaptobrevin PF00957.16 gi|345007071|ref|YP_004809923.1| - 0.46 10.1 2.2 0.84 9.2 1.5 1.3 1 0 0 1 1 1 0 Synaptobrevin ADIP PF11559.3 gi|345007071|ref|YP_004809923.1| - 0.56 10.0 7.1 1.2 9.0 4.9 1.5 1 0 0 1 1 1 0 Afadin- and alpha -actinin-Binding DUF2205 PF10224.4 gi|345007071|ref|YP_004809923.1| - 0.6 9.7 6.0 1.2 8.7 4.2 1.4 1 0 0 1 1 1 0 Predicted coiled-coil protein (DUF2205) TBPIP PF07106.8 gi|345007071|ref|YP_004809923.1| - 0.73 9.3 5.0 0.41 10.1 2.0 1.7 2 0 0 2 2 1 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) EMP24_GP25L PF01105.19 gi|345007071|ref|YP_004809923.1| - 0.82 9.3 6.0 6.1 6.5 2.9 2.1 2 0 0 2 2 2 0 emp24/gp25L/p24 family/GOLD Prefoldin_2 PF01920.15 gi|345007071|ref|YP_004809923.1| - 0.85 9.4 8.1 1.6 8.4 5.6 1.4 1 0 0 1 1 1 0 Prefoldin subunit bZIP_2 PF07716.10 gi|345007071|ref|YP_004809923.1| - 0.86 9.4 14.5 0.8 9.5 6.4 2.6 1 1 1 2 2 2 0 Basic region leucine zipper APG6 PF04111.7 gi|345007071|ref|YP_004809923.1| - 2.2 7.2 7.1 3.5 6.5 4.9 1.2 1 0 0 1 1 1 0 Autophagy protein Apg6 NYD-SP28_assoc PF14775.1 gi|345007071|ref|YP_004809923.1| - 3.1 7.5 9.2 5.8 6.6 5.2 2.3 1 1 1 2 2 2 0 Sperm tail C-terminal domain TSC22 PF01166.13 gi|345007071|ref|YP_004809923.1| - 3.5 7.6 14.5 28 4.7 8.0 3.2 2 1 0 2 2 2 0 TSC-22/dip/bun family SH3_1 PF00018.23 gi|345007073|ref|YP_004809925.1| - 0.17 11.3 0.8 6.1 6.3 0.5 3.3 3 1 1 4 4 4 0 SH3 domain TFIIB PF00382.14 gi|345007074|ref|YP_004809926.1| - 3.1e-31 106.9 0.6 8e-18 64.0 0.6 2.6 3 0 0 3 3 3 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.7 gi|345007074|ref|YP_004809926.1| - 1.5e-12 46.5 2.6 2.8e-12 45.7 1.8 1.5 1 0 0 1 1 1 1 TFIIB zinc-binding DZR PF12773.2 gi|345007074|ref|YP_004809926.1| - 0.0094 15.7 1.4 0.021 14.6 1.0 1.5 1 0 0 1 1 1 1 Double zinc ribbon zinc-ribbons_6 PF07191.7 gi|345007074|ref|YP_004809926.1| - 0.052 13.3 1.1 0.12 12.1 0.7 1.6 1 0 0 1 1 1 0 zinc-ribbons OrfB_Zn_ribbon PF07282.6 gi|345007074|ref|YP_004809926.1| - 0.06 13.0 1.3 0.18 11.5 0.6 2.0 2 0 0 2 2 2 0 Putative transposase DNA-binding domain Prok-RING_1 PF14446.1 gi|345007074|ref|YP_004809926.1| - 0.092 12.4 2.0 0.2 11.4 1.4 1.5 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 DUF1272 PF06906.6 gi|345007074|ref|YP_004809926.1| - 0.13 12.1 2.0 0.15 11.9 0.1 2.0 1 1 0 1 1 1 0 Protein of unknown function (DUF1272) HypA PF01155.14 gi|345007074|ref|YP_004809926.1| - 0.43 10.2 3.3 1.7 8.3 0.6 2.5 2 1 0 2 2 2 0 Hydrogenase expression/synthesis hypA family UPF0547 PF10571.4 gi|345007074|ref|YP_004809926.1| - 0.67 9.7 2.8 1.5 8.5 2.0 1.6 1 0 0 1 1 1 0 Uncharacterised protein family UPF0547 DDE_Tnp_1 PF01609.16 gi|345007076|ref|YP_004809928.1| - 0.01 15.4 0.1 0.044 13.3 0.1 2.0 1 1 0 1 1 1 0 Transposase DDE domain Response_reg PF00072.19 gi|345007079|ref|YP_004809931.1| - 8.4e-19 67.6 0.0 2.3e-18 66.2 0.0 1.7 1 0 0 1 1 1 1 Response regulator receiver domain PAS PF00989.19 gi|345007079|ref|YP_004809931.1| - 3.3e-18 65.5 0.2 3e-17 62.4 0.0 2.6 2 0 0 2 2 2 1 PAS fold PAS_4 PF08448.5 gi|345007079|ref|YP_004809931.1| - 1.1e-14 54.4 0.1 5e-14 52.2 0.1 2.2 2 0 0 2 2 1 1 PAS fold PAS_9 PF13426.1 gi|345007079|ref|YP_004809931.1| - 3.5e-14 53.0 0.0 1.4e-13 51.1 0.0 2.1 1 0 0 1 1 1 1 PAS domain PAS_3 PF08447.6 gi|345007079|ref|YP_004809931.1| - 2.6e-13 49.8 0.0 9e-13 48.1 0.0 2.0 1 0 0 1 1 1 1 PAS fold HATPase_c PF02518.21 gi|345007079|ref|YP_004809931.1| - 2.7e-12 46.3 3.2 1.9e-11 43.6 0.1 3.2 2 1 1 3 3 3 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GAF_2 PF13185.1 gi|345007079|ref|YP_004809931.1| - 6e-09 36.5 1.3 9.7e-09 35.8 0.1 1.9 2 0 0 2 2 2 1 GAF domain HisKA PF00512.20 gi|345007079|ref|YP_004809931.1| - 1.7e-08 34.3 2.9 2.3e-08 33.9 0.3 2.5 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain GAF_3 PF13492.1 gi|345007079|ref|YP_004809931.1| - 1.6e-07 31.4 0.4 1.9e-06 28.0 0.0 2.9 4 0 0 4 4 4 1 GAF domain GAF PF01590.21 gi|345007079|ref|YP_004809931.1| - 4.9e-07 29.9 1.1 2.3e-05 24.5 0.1 3.0 3 0 0 3 3 3 1 GAF domain PAS_8 PF13188.1 gi|345007079|ref|YP_004809931.1| - 1.4e-06 27.9 0.4 7.6e-06 25.5 0.0 2.5 2 0 0 2 2 2 1 PAS domain PAS_11 PF14598.1 gi|345007079|ref|YP_004809931.1| - 5.6e-06 26.2 0.0 1.6e-05 24.8 0.0 1.7 1 0 0 1 1 1 1 PAS domain HATPase_c_2 PF13581.1 gi|345007079|ref|YP_004809931.1| - 5.3e-05 22.9 0.1 0.00031 20.5 0.1 2.3 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c_5 PF14501.1 gi|345007079|ref|YP_004809931.1| - 0.004 16.8 0.0 2.5 7.8 0.0 3.4 2 1 0 2 2 2 1 GHKL domain PAS_10 PF13596.1 gi|345007079|ref|YP_004809931.1| - 0.012 15.8 0.2 0.057 13.6 0.0 2.3 3 0 0 3 3 1 0 PAS domain PI31_Prot_N PF11566.3 gi|345007079|ref|YP_004809931.1| - 0.14 11.7 0.4 0.45 10.0 0.1 1.9 2 0 0 2 2 2 0 PI31 proteasome regulator N-terminal CK2S PF15011.1 gi|345007079|ref|YP_004809931.1| - 0.54 10.0 3.4 11 5.7 0.2 2.9 2 1 0 3 3 3 0 Casein Kinase 2 substrate adh_short_C2 PF13561.1 gi|345007080|ref|YP_004809932.1| - 1.7e-37 129.4 0.0 1.9e-37 129.2 0.0 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.20 gi|345007080|ref|YP_004809932.1| - 1e-32 113.3 0.2 1.6e-32 112.7 0.1 1.3 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.5 gi|345007080|ref|YP_004809932.1| - 7.9e-12 45.2 0.1 1.3e-11 44.5 0.0 1.4 1 0 0 1 1 1 1 KR domain NAD_binding_10 PF13460.1 gi|345007080|ref|YP_004809932.1| - 3.4e-07 30.4 0.3 7.3e-07 29.3 0.2 1.6 1 0 0 1 1 1 1 NADH(P)-binding Epimerase PF01370.16 gi|345007080|ref|YP_004809932.1| - 9e-05 22.0 0.1 0.00066 19.1 0.1 2.0 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family THF_DHG_CYH_C PF02882.14 gi|345007080|ref|YP_004809932.1| - 0.0025 16.9 0.9 0.0038 16.3 0.2 1.6 2 0 0 2 2 2 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain 3HCDH_N PF02737.13 gi|345007080|ref|YP_004809932.1| - 0.011 15.3 0.2 0.023 14.3 0.2 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain F420_oxidored PF03807.12 gi|345007080|ref|YP_004809932.1| - 0.012 16.0 0.0 0.054 13.9 0.0 2.0 2 0 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent RmlD_sub_bind PF04321.12 gi|345007080|ref|YP_004809932.1| - 0.014 14.3 0.1 0.028 13.3 0.1 1.5 1 0 0 1 1 1 0 RmlD substrate binding domain 2-Hacid_dh_C PF02826.14 gi|345007080|ref|YP_004809932.1| - 0.028 13.5 0.0 0.051 12.7 0.0 1.4 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Shikimate_DH PF01488.15 gi|345007080|ref|YP_004809932.1| - 0.04 14.0 0.1 0.074 13.1 0.1 1.4 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase APH PF01636.18 gi|345007081|ref|YP_004809933.1| - 2e-42 145.5 7.5 2.7e-42 145.1 5.2 1.2 1 0 0 1 1 1 1 Phosphotransferase enzyme family EcKinase PF02958.15 gi|345007081|ref|YP_004809933.1| - 8.7e-05 21.8 0.0 0.00013 21.2 0.0 1.2 1 0 0 1 1 1 1 Ecdysteroid kinase DUF1679 PF07914.6 gi|345007081|ref|YP_004809933.1| - 0.066 11.8 0.0 0.091 11.3 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1679) Acyl-CoA_dh_1 PF00441.19 gi|345007082|ref|YP_004809934.1| - 2.4e-42 144.5 1.3 4.2e-42 143.7 0.9 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_2 PF08028.6 gi|345007082|ref|YP_004809934.1| - 3.9e-19 69.2 1.3 8.1e-19 68.1 0.9 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_M PF02770.14 gi|345007082|ref|YP_004809934.1| - 4.9e-18 64.3 0.2 9.3e-18 63.4 0.1 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_N PF02771.11 gi|345007082|ref|YP_004809934.1| - 6.2e-17 62.1 1.2 1.3e-16 61.2 0.0 2.1 3 0 0 3 3 3 1 Acyl-CoA dehydrogenase, N-terminal domain HpaB_N PF11794.3 gi|345007082|ref|YP_004809934.1| - 0.1 11.9 0.0 0.1 11.9 0.0 1.9 3 0 0 3 3 3 0 4-hydroxyphenylacetate 3-hydroxylase N terminal AMP-binding PF00501.23 gi|345007083|ref|YP_004809935.1| - 7.1e-89 298.0 0.1 8.3e-89 297.8 0.1 1.0 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|345007083|ref|YP_004809935.1| - 7.5e-17 62.0 0.2 2.1e-16 60.6 0.0 1.9 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain adh_short_C2 PF13561.1 gi|345007084|ref|YP_004809936.1| - 1.3e-29 103.6 0.1 1.6e-29 103.4 0.1 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.20 gi|345007084|ref|YP_004809936.1| - 5.9e-26 91.3 3.9 1.6e-25 89.9 2.9 1.5 2 0 0 2 2 2 1 short chain dehydrogenase KR PF08659.5 gi|345007084|ref|YP_004809936.1| - 1.8e-09 37.5 2.6 2.7e-09 36.9 1.8 1.4 1 1 0 1 1 1 1 KR domain OCD_Mu_crystall PF02423.10 gi|345007085|ref|YP_004809937.1| - 1.9e-60 204.3 0.6 3.1e-60 203.5 0.4 1.3 1 1 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family Shikimate_DH PF01488.15 gi|345007085|ref|YP_004809937.1| - 5.8e-06 26.4 0.0 9.2e-06 25.7 0.0 1.2 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase F420_oxidored PF03807.12 gi|345007085|ref|YP_004809937.1| - 1.1e-05 25.7 0.0 2.3e-05 24.7 0.0 1.5 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.10 gi|345007085|ref|YP_004809937.1| - 0.02 14.7 0.0 0.041 13.7 0.0 1.5 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase GFO_IDH_MocA PF01408.17 gi|345007085|ref|YP_004809937.1| - 0.063 13.7 0.1 0.16 12.4 0.0 1.7 2 0 0 2 2 2 0 Oxidoreductase family, NAD-binding Rossmann fold Saccharop_dh PF03435.13 gi|345007085|ref|YP_004809937.1| - 0.064 12.2 0.0 0.092 11.7 0.0 1.1 1 0 0 1 1 1 0 Saccharopine dehydrogenase FAA_hydrolase PF01557.13 gi|345007086|ref|YP_004809938.1| - 2.7e-60 203.5 0.1 3.5e-60 203.1 0.1 1.1 1 0 0 1 1 1 1 Fumarylacetoacetate (FAA) hydrolase family Glyoxalase_2 PF12681.2 gi|345007087|ref|YP_004809939.1| - 2.3e-15 57.1 0.1 2.6e-15 56.9 0.1 1.0 1 0 0 1 1 1 1 Glyoxalase-like domain Glyoxalase PF00903.20 gi|345007087|ref|YP_004809939.1| - 7.6e-10 38.8 0.0 1e-09 38.4 0.0 1.2 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_4 PF13669.1 gi|345007087|ref|YP_004809939.1| - 3e-09 36.8 0.1 1.1e-08 35.0 0.0 1.7 1 1 1 2 2 2 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_3 PF13468.1 gi|345007087|ref|YP_004809939.1| - 0.05 13.5 0.0 0.19 11.6 0.0 1.7 1 1 1 2 2 2 0 Glyoxalase-like domain Peptidase_S15 PF02129.13 gi|345007088|ref|YP_004809940.1| - 1.3e-63 215.0 0.5 1.6e-63 214.6 0.3 1.1 1 0 0 1 1 1 1 X-Pro dipeptidyl-peptidase (S15 family) PepX_C PF08530.5 gi|345007088|ref|YP_004809940.1| - 4.2e-47 160.8 0.2 6.5e-47 160.2 0.1 1.3 1 0 0 1 1 1 1 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain Abhydrolase_5 PF12695.2 gi|345007088|ref|YP_004809940.1| - 1.9e-05 24.4 0.3 0.00011 22.0 0.2 2.1 1 1 0 1 1 1 1 Alpha/beta hydrolase family Peptidase_S9 PF00326.16 gi|345007088|ref|YP_004809940.1| - 0.023 13.9 0.3 0.055 12.6 0.1 1.7 2 0 0 2 2 2 0 Prolyl oligopeptidase family AXE1 PF05448.7 gi|345007088|ref|YP_004809940.1| - 0.15 10.4 0.0 1.8 6.9 0.0 2.2 1 1 1 2 2 2 0 Acetyl xylan esterase (AXE1) BPD_transp_1 PF00528.17 gi|345007089|ref|YP_004809941.1| - 1.3e-26 93.2 6.4 2.1e-26 92.5 4.4 1.3 1 0 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.2 gi|345007089|ref|YP_004809941.1| - 7.6e-10 38.0 0.0 3.2e-09 36.0 0.0 2.2 2 0 0 2 2 2 1 N-terminal TM domain of oligopeptide transport permease C DUF998 PF06197.8 gi|345007089|ref|YP_004809941.1| - 0.017 14.4 2.4 0.017 14.4 1.7 3.1 3 0 0 3 3 3 0 Protein of unknown function (DUF998) BPD_transp_1 PF00528.17 gi|345007090|ref|YP_004809942.1| - 3.5e-39 134.2 15.0 3.5e-39 134.2 10.4 1.6 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_5 PF00496.17 gi|345007091|ref|YP_004809943.1| - 6.9e-64 216.0 6.5 9.5e-64 215.5 4.5 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle ADH_zinc_N PF00107.21 gi|345007092|ref|YP_004809944.1| - 2.3e-35 120.9 0.1 3.5e-35 120.3 0.1 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_N PF08240.7 gi|345007092|ref|YP_004809944.1| - 1.6e-22 79.3 0.2 3.2e-22 78.3 0.1 1.5 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N_2 PF13602.1 gi|345007092|ref|YP_004809944.1| - 1.2e-13 52.0 0.0 2.3e-13 51.1 0.0 1.5 1 0 0 1 1 1 1 Zinc-binding dehydrogenase AlaDh_PNT_C PF01262.16 gi|345007092|ref|YP_004809944.1| - 6e-06 25.9 0.6 1.1e-05 25.0 0.2 1.5 1 1 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_10 PF13460.1 gi|345007092|ref|YP_004809944.1| - 0.00044 20.3 0.7 0.00069 19.6 0.5 1.3 1 0 0 1 1 1 1 NADH(P)-binding Eno-Rase_NADH_b PF12242.3 gi|345007092|ref|YP_004809944.1| - 0.0012 18.6 1.1 0.0021 17.7 0.7 1.4 1 0 0 1 1 1 1 NAD(P)H binding domain of trans-2-enoyl-CoA reductase ELFV_dehydrog PF00208.16 gi|345007092|ref|YP_004809944.1| - 0.017 14.7 0.0 0.024 14.2 0.0 1.2 1 0 0 1 1 1 0 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase 2-Hacid_dh_C PF02826.14 gi|345007092|ref|YP_004809944.1| - 0.024 13.7 0.0 0.04 13.0 0.0 1.3 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain THF_DHG_CYH_C PF02882.14 gi|345007092|ref|YP_004809944.1| - 0.026 13.5 0.0 0.048 12.7 0.0 1.3 1 0 0 1 1 1 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain XdhC_C PF13478.1 gi|345007092|ref|YP_004809944.1| - 0.045 14.0 0.0 0.067 13.5 0.0 1.3 1 0 0 1 1 1 0 XdhC Rossmann domain adh_short PF00106.20 gi|345007092|ref|YP_004809944.1| - 0.049 13.5 2.1 0.12 12.3 0.9 1.8 1 1 0 2 2 2 0 short chain dehydrogenase TPP_enzyme_N PF02776.13 gi|345007093|ref|YP_004809945.1| - 4.5e-44 149.9 0.9 1.4e-42 145.0 0.4 2.4 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.16 gi|345007093|ref|YP_004809945.1| - 2.2e-34 118.2 0.1 1.3e-33 115.7 0.0 2.2 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_M PF00205.17 gi|345007093|ref|YP_004809945.1| - 3.1e-31 107.9 0.0 1.1e-30 106.1 0.0 1.9 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, central domain Peptidase_M55 PF04951.8 gi|345007093|ref|YP_004809945.1| - 0.17 11.1 0.0 0.31 10.2 0.0 1.4 1 0 0 1 1 1 0 D-aminopeptidase Rieske PF00355.21 gi|345007094|ref|YP_004809946.1| - 3.6e-14 52.1 0.2 9e-14 50.8 0.1 1.6 1 1 0 1 1 1 1 Rieske [2Fe-2S] domain Rieske_2 PF13806.1 gi|345007094|ref|YP_004809946.1| - 5.1e-12 45.4 0.0 2.5e-11 43.1 0.0 1.8 1 1 0 1 1 1 1 Rieske-like [2Fe-2S] domain Amidohydro_2 PF04909.9 gi|345007095|ref|YP_004809947.1| - 1.4e-30 106.8 0.5 1.6e-30 106.6 0.4 1.2 1 0 0 1 1 1 1 Amidohydrolase 2-Hacid_dh_C PF02826.14 gi|345007097|ref|YP_004809949.1| - 8.8e-55 184.6 0.0 1.2e-54 184.1 0.0 1.2 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.25 gi|345007097|ref|YP_004809949.1| - 3.9e-21 74.9 0.0 4.8e-21 74.6 0.0 1.1 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain UDPG_MGDP_dh_C PF03720.10 gi|345007097|ref|YP_004809949.1| - 0.0047 17.0 0.0 0.5 10.5 0.0 2.8 3 0 0 3 3 3 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain Beta_helix PF13229.1 gi|345007097|ref|YP_004809949.1| - 0.093 12.4 0.3 0.18 11.5 0.1 1.5 2 0 0 2 2 2 0 Right handed beta helix region MmgE_PrpD PF03972.9 gi|345007098|ref|YP_004809950.1| - 8.6e-57 192.2 2.2 1.1e-56 191.9 1.5 1.0 1 0 0 1 1 1 1 MmgE/PrpD family Sulfate_tra_GLY PF13792.1 gi|345007098|ref|YP_004809950.1| - 0.13 11.9 4.2 4.2 7.1 0.0 3.0 3 0 0 3 3 3 0 Sulfate transporter N-terminal domain with GLY motif ABC_tran PF00005.22 gi|345007099|ref|YP_004809951.1| - 8.9e-33 113.4 0.0 1.3e-32 112.9 0.0 1.3 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|345007099|ref|YP_004809951.1| - 1.3e-17 63.8 0.6 2.7e-17 62.8 0.4 1.6 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|345007099|ref|YP_004809951.1| - 5.5e-10 39.6 0.0 7.1e-07 29.4 0.0 2.2 1 1 0 2 2 2 2 AAA domain AAA_22 PF13401.1 gi|345007099|ref|YP_004809951.1| - 3.4e-05 24.0 0.6 0.00015 21.8 0.4 2.0 1 1 0 1 1 1 1 AAA domain Sigma54_activat PF00158.21 gi|345007099|ref|YP_004809951.1| - 0.00024 20.6 0.1 0.016 14.6 0.0 2.2 2 0 0 2 2 2 1 Sigma-54 interaction domain SMC_N PF02463.14 gi|345007099|ref|YP_004809951.1| - 0.00052 19.3 0.0 0.23 10.6 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_16 PF13191.1 gi|345007099|ref|YP_004809951.1| - 0.0017 18.3 0.1 0.0038 17.2 0.1 1.6 1 1 0 1 1 1 1 AAA ATPase domain DUF258 PF03193.11 gi|345007099|ref|YP_004809951.1| - 0.0018 17.4 0.2 0.0045 16.2 0.0 1.7 2 0 0 2 2 2 1 Protein of unknown function, DUF258 AAA_29 PF13555.1 gi|345007099|ref|YP_004809951.1| - 0.003 17.0 0.0 0.0053 16.2 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain Rad17 PF03215.10 gi|345007099|ref|YP_004809951.1| - 0.028 13.1 0.0 0.041 12.5 0.0 1.1 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein AAA PF00004.24 gi|345007099|ref|YP_004809951.1| - 0.04 14.1 0.0 0.11 12.7 0.0 1.7 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) NB-ARC PF00931.17 gi|345007099|ref|YP_004809951.1| - 0.058 12.2 0.0 0.086 11.6 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain Sigma54_activ_2 PF14532.1 gi|345007099|ref|YP_004809951.1| - 0.061 13.3 0.1 0.14 12.1 0.0 1.6 2 0 0 2 2 1 0 Sigma-54 interaction domain AAA_18 PF13238.1 gi|345007099|ref|YP_004809951.1| - 0.073 13.3 0.1 0.41 10.9 0.0 2.2 2 0 0 2 2 2 0 AAA domain NACHT PF05729.7 gi|345007099|ref|YP_004809951.1| - 0.1 12.2 0.0 0.18 11.4 0.0 1.4 1 0 0 1 1 1 0 NACHT domain G-alpha PF00503.15 gi|345007099|ref|YP_004809951.1| - 0.13 10.8 0.0 0.2 10.3 0.0 1.2 1 0 0 1 1 1 0 G-protein alpha subunit IIGP PF05049.8 gi|345007099|ref|YP_004809951.1| - 0.14 10.9 0.2 0.2 10.4 0.2 1.2 1 0 0 1 1 1 0 Interferon-inducible GTPase (IIGP) RNA_helicase PF00910.17 gi|345007099|ref|YP_004809951.1| - 0.15 12.2 0.0 0.38 10.9 0.0 1.7 2 0 0 2 2 1 0 RNA helicase ABC_tran PF00005.22 gi|345007100|ref|YP_004809952.1| - 6.8e-30 104.1 0.0 9.4e-30 103.6 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|345007100|ref|YP_004809952.1| - 1.5e-19 70.0 0.9 3.1e-19 69.0 0.6 1.6 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|345007100|ref|YP_004809952.1| - 5.4e-10 39.7 0.1 1.8e-06 28.1 0.0 2.1 1 1 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|345007100|ref|YP_004809952.1| - 0.00041 19.6 0.0 0.00063 19.0 0.0 1.3 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA PF00004.24 gi|345007100|ref|YP_004809952.1| - 0.0013 18.9 0.0 0.0035 17.5 0.0 1.7 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.1 gi|345007100|ref|YP_004809952.1| - 0.0057 16.8 1.0 0.038 14.1 0.7 2.0 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|345007100|ref|YP_004809952.1| - 0.0062 16.0 0.0 0.012 15.1 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain DUF258 PF03193.11 gi|345007100|ref|YP_004809952.1| - 0.029 13.5 0.0 0.048 12.8 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_17 PF13207.1 gi|345007100|ref|YP_004809952.1| - 0.032 15.0 0.2 0.072 13.9 0.1 1.7 1 1 0 1 1 1 0 AAA domain AAA_16 PF13191.1 gi|345007100|ref|YP_004809952.1| - 0.04 13.8 0.1 0.057 13.3 0.0 1.5 1 1 0 1 1 1 0 AAA ATPase domain CbiA PF01656.18 gi|345007100|ref|YP_004809952.1| - 0.046 13.1 0.2 0.23 10.8 0.1 1.9 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_33 PF13671.1 gi|345007100|ref|YP_004809952.1| - 0.081 12.7 0.0 0.14 12.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.1 gi|345007100|ref|YP_004809952.1| - 0.11 12.8 0.7 0.43 10.8 0.5 2.0 1 1 0 1 1 1 0 AAA domain AAA_23 PF13476.1 gi|345007100|ref|YP_004809952.1| - 0.19 12.0 0.0 0.31 11.3 0.0 1.4 1 1 0 1 1 1 0 AAA domain MFS_1 PF07690.11 gi|345007101|ref|YP_004809953.1| - 6.5e-44 150.0 46.7 1.3e-43 149.0 26.1 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily PTR2 PF00854.16 gi|345007101|ref|YP_004809953.1| - 4.7e-05 22.3 1.3 4.7e-05 22.3 0.9 1.9 2 0 0 2 2 2 1 POT family MFS_2 PF13347.1 gi|345007101|ref|YP_004809953.1| - 0.0002 19.9 26.7 0.0012 17.3 4.4 2.6 2 1 1 3 3 3 2 MFS/sugar transport protein MFS_1_like PF12832.2 gi|345007101|ref|YP_004809953.1| - 0.012 15.3 1.2 8.5 6.2 0.0 3.4 3 0 0 3 3 3 0 MFS_1 like family DUF1228 PF06779.9 gi|345007101|ref|YP_004809953.1| - 0.063 13.2 0.1 0.063 13.2 0.1 4.4 3 2 0 4 4 4 0 Protein of unknown function (DUF1228) TRI12 PF06609.8 gi|345007101|ref|YP_004809953.1| - 0.44 8.6 15.6 0.0045 15.2 3.5 2.0 1 1 0 2 2 2 0 Fungal trichothecene efflux pump (TRI12) AcetylCoA_hyd_C PF13336.1 gi|345007102|ref|YP_004809954.1| - 1.1e-42 145.3 0.0 1.5e-42 144.8 0.0 1.2 1 0 0 1 1 1 1 Acetyl-CoA hydrolase/transferase C-terminal domain AcetylCoA_hydro PF02550.10 gi|345007102|ref|YP_004809954.1| - 9.9e-15 54.8 0.0 3.1e-14 53.1 0.0 1.8 1 1 0 1 1 1 1 Acetyl-CoA hydrolase/transferase N-terminal domain CitF PF04223.7 gi|345007102|ref|YP_004809954.1| - 7.1e-06 24.9 0.1 1.2e-05 24.2 0.0 1.4 1 0 0 1 1 1 1 Citrate lyase, alpha subunit (CitF) CoA_trans PF01144.18 gi|345007102|ref|YP_004809954.1| - 0.00011 21.5 0.0 0.00016 20.8 0.0 1.3 1 0 0 1 1 1 1 Coenzyme A transferase MaoC_dehydratas PF01575.14 gi|345007103|ref|YP_004809955.1| - 4.8e-22 77.6 0.3 6.3e-22 77.2 0.2 1.1 1 0 0 1 1 1 1 MaoC like domain MaoC_dehydrat_N PF13452.1 gi|345007103|ref|YP_004809955.1| - 6.2e-08 32.4 0.1 8.4e-08 32.0 0.1 1.2 1 0 0 1 1 1 1 N-terminal half of MaoC dehydratase Acyl-CoA_dh_1 PF00441.19 gi|345007104|ref|YP_004809956.1| - 5.4e-38 130.4 2.5 8.4e-38 129.8 1.7 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.11 gi|345007104|ref|YP_004809956.1| - 5.7e-25 88.0 0.0 1.4e-24 86.7 0.0 1.7 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_2 PF08028.6 gi|345007104|ref|YP_004809956.1| - 3.4e-20 72.6 7.6 6.4e-20 71.7 5.2 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_M PF02770.14 gi|345007104|ref|YP_004809956.1| - 1.7e-18 65.8 0.0 3.1e-18 65.0 0.0 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain IclR PF01614.13 gi|345007105|ref|YP_004809957.1| - 7.2e-35 119.4 0.0 4.7e-34 116.8 0.0 2.0 2 0 0 2 2 2 1 Bacterial transcriptional regulator HTH_IclR PF09339.5 gi|345007105|ref|YP_004809957.1| - 2.6e-13 49.3 0.2 5.3e-12 45.1 0.0 2.5 2 1 0 2 2 2 1 IclR helix-turn-helix domain MarR_2 PF12802.2 gi|345007105|ref|YP_004809957.1| - 1.6e-08 34.0 0.0 8.8e-08 31.7 0.0 2.2 2 0 0 2 2 2 1 MarR family HTH_20 PF12840.2 gi|345007105|ref|YP_004809957.1| - 3.5e-07 29.9 0.0 8.8e-07 28.6 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|345007105|ref|YP_004809957.1| - 8e-07 28.3 0.0 1.7e-06 27.3 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.15 gi|345007105|ref|YP_004809957.1| - 2.8e-06 26.9 0.0 5.6e-06 25.9 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR PF01047.17 gi|345007105|ref|YP_004809957.1| - 4.9e-06 26.1 0.1 3.5e-05 23.4 0.0 2.2 2 0 0 2 2 2 1 MarR family HTH_38 PF13936.1 gi|345007105|ref|YP_004809957.1| - 2e-05 24.0 0.0 6.3e-05 22.4 0.0 1.8 2 0 0 2 2 1 1 Helix-turn-helix domain TrmB PF01978.14 gi|345007105|ref|YP_004809957.1| - 0.00047 19.8 0.0 0.0011 18.6 0.0 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_11 PF08279.7 gi|345007105|ref|YP_004809957.1| - 0.00049 19.6 0.1 0.0031 17.1 0.0 2.3 3 0 0 3 3 2 1 HTH domain HTH_40 PF14493.1 gi|345007105|ref|YP_004809957.1| - 0.0013 18.8 0.0 0.0028 17.8 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_DeoR PF08220.7 gi|345007105|ref|YP_004809957.1| - 0.0025 17.3 0.1 0.0071 15.8 0.0 1.7 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_27 PF13463.1 gi|345007105|ref|YP_004809957.1| - 0.0031 17.8 0.1 0.0092 16.2 0.0 1.8 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_23 PF13384.1 gi|345007105|ref|YP_004809957.1| - 0.0043 16.6 0.0 0.011 15.3 0.0 1.7 1 0 0 1 1 1 1 Homeodomain-like domain GerE PF00196.14 gi|345007105|ref|YP_004809957.1| - 0.0051 16.1 0.0 0.01 15.1 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family HTH_36 PF13730.1 gi|345007105|ref|YP_004809957.1| - 0.0093 16.0 0.0 0.056 13.5 0.0 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain Fe_dep_repress PF01325.14 gi|345007105|ref|YP_004809957.1| - 0.0098 15.8 0.0 0.024 14.5 0.0 1.6 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_45 PF14947.1 gi|345007105|ref|YP_004809957.1| - 0.028 14.2 0.0 0.06 13.1 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix LexA_DNA_bind PF01726.11 gi|345007105|ref|YP_004809957.1| - 0.052 13.1 0.0 0.16 11.5 0.0 1.8 1 0 0 1 1 1 0 LexA DNA binding domain HTH_34 PF13601.1 gi|345007105|ref|YP_004809957.1| - 0.057 13.4 0.1 0.17 11.9 0.0 1.7 2 0 0 2 2 1 0 Winged helix DNA-binding domain SpoIIID PF12116.3 gi|345007105|ref|YP_004809957.1| - 0.073 13.0 0.0 0.15 12.0 0.0 1.5 1 0 0 1 1 1 0 Stage III sporulation protein D B-block_TFIIIC PF04182.7 gi|345007105|ref|YP_004809957.1| - 0.077 12.8 0.0 0.12 12.2 0.0 1.3 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC RPA_C PF08784.6 gi|345007105|ref|YP_004809957.1| - 0.082 13.3 0.0 0.21 11.9 0.0 1.6 2 0 0 2 2 1 0 Replication protein A C terminal Reo_sigmaC PF04582.7 gi|345007107|ref|YP_004809959.1| - 4.1e-05 22.9 10.9 0.054 12.6 1.7 3.7 2 2 2 4 4 4 2 Reovirus sigma C capsid protein Seryl_tRNA_N PF02403.17 gi|345007107|ref|YP_004809959.1| - 8.1e-05 22.6 41.3 0.13 12.3 1.6 5.6 2 2 2 5 5 5 3 Seryl-tRNA synthetase N-terminal domain Spc7 PF08317.6 gi|345007107|ref|YP_004809959.1| - 0.00039 19.1 48.1 0.022 13.4 2.1 4.2 1 1 4 5 5 5 4 Spc7 kinetochore protein SMC_N PF02463.14 gi|345007107|ref|YP_004809959.1| - 0.0016 17.7 0.5 0.0098 15.1 0.2 2.0 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain Baculo_PEP_C PF04513.7 gi|345007107|ref|YP_004809959.1| - 0.0026 17.6 20.3 1.4 8.7 0.9 5.0 2 2 2 4 4 4 2 Baculovirus polyhedron envelope protein, PEP, C terminus CENP-F_leu_zip PF10473.4 gi|345007107|ref|YP_004809959.1| - 0.0026 17.6 62.6 0.56 10.0 11.1 5.0 2 2 3 5 5 5 3 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 WXG100 PF06013.7 gi|345007107|ref|YP_004809959.1| - 0.003 17.5 14.9 0.91 9.5 0.1 6.4 5 2 0 5 5 5 1 Proteins of 100 residues with WXG APG6 PF04111.7 gi|345007107|ref|YP_004809959.1| - 0.0034 16.4 15.0 0.0034 16.4 10.4 4.4 2 2 2 4 4 4 1 Autophagy protein Apg6 WEMBL PF05701.6 gi|345007107|ref|YP_004809959.1| - 0.0043 15.5 44.8 0.0036 15.8 14.7 2.4 2 1 0 2 2 2 1 Weak chloroplast movement under blue light AAA_13 PF13166.1 gi|345007107|ref|YP_004809959.1| - 0.0064 15.0 37.4 0.028 12.8 8.7 2.6 2 1 1 3 3 3 3 AAA domain MAP65_ASE1 PF03999.7 gi|345007107|ref|YP_004809959.1| - 0.0088 14.7 40.0 0.16 10.5 9.9 3.0 1 1 1 2 2 2 2 Microtubule associated protein (MAP65/ASE1 family) DUF904 PF06005.7 gi|345007107|ref|YP_004809959.1| - 0.016 15.4 6.3 0.016 15.4 4.4 6.7 3 2 2 5 5 4 0 Protein of unknown function (DUF904) GAS PF13851.1 gi|345007107|ref|YP_004809959.1| - 0.023 13.9 49.1 0.17 11.0 9.8 5.0 2 2 2 4 4 4 0 Growth-arrest specific micro-tubule binding Vps51 PF08700.6 gi|345007107|ref|YP_004809959.1| - 0.029 14.1 0.9 0.029 14.1 0.6 5.7 3 2 3 6 6 6 0 Vps51/Vps67 IncA PF04156.9 gi|345007107|ref|YP_004809959.1| - 0.044 13.3 75.5 0.28 10.7 22.2 5.3 2 2 1 3 3 3 0 IncA protein AAA_27 PF13514.1 gi|345007107|ref|YP_004809959.1| - 0.047 11.3 54.0 0.78 7.3 23.2 3.2 1 1 1 3 3 3 0 AAA domain DUF972 PF06156.8 gi|345007107|ref|YP_004809959.1| - 0.054 13.8 39.5 0.18 12.1 4.5 5.5 2 2 4 6 6 6 0 Protein of unknown function (DUF972) TBPIP PF07106.8 gi|345007107|ref|YP_004809959.1| - 0.063 12.8 45.5 0.83 9.1 2.9 5.2 2 2 3 5 5 5 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) DUF342 PF03961.8 gi|345007107|ref|YP_004809959.1| - 0.19 10.1 33.6 0.58 8.5 3.1 4.1 1 1 2 4 4 4 0 Protein of unknown function (DUF342) Fib_alpha PF08702.5 gi|345007107|ref|YP_004809959.1| - 0.26 11.4 30.5 0.073 13.1 2.6 4.6 3 2 2 5 5 5 0 Fibrinogen alpha/beta chain family Mnd1 PF03962.10 gi|345007107|ref|YP_004809959.1| - 0.39 10.3 49.9 2.1 7.9 1.7 5.2 2 2 2 4 4 4 0 Mnd1 family FlxA PF14282.1 gi|345007107|ref|YP_004809959.1| - 0.62 10.0 28.2 2.4 8.1 0.1 5.5 3 1 2 5 5 5 0 FlxA-like protein Laminin_II PF06009.7 gi|345007107|ref|YP_004809959.1| - 0.65 9.7 25.1 3.8 7.2 2.9 5.7 4 2 2 6 6 5 0 Laminin Domain II Lectin_N PF03954.9 gi|345007107|ref|YP_004809959.1| - 0.65 9.3 15.0 0.76 9.1 0.3 4.2 2 2 2 4 4 4 0 Hepatic lectin, N-terminal domain DivIC PF04977.10 gi|345007107|ref|YP_004809959.1| - 0.95 8.9 60.1 0.24 10.9 1.1 8.5 2 2 5 8 8 8 0 Septum formation initiator COG2 PF06148.6 gi|345007107|ref|YP_004809959.1| - 1.7 8.4 33.0 0.086 12.7 3.1 5.4 2 2 3 5 5 5 0 COG (conserved oligomeric Golgi) complex component, COG2 TPR_MLP1_2 PF07926.7 gi|345007107|ref|YP_004809959.1| - 1.9 8.2 46.1 1.4 8.6 6.9 4.8 2 2 2 4 4 4 0 TPR/MLP1/MLP2-like protein Atg14 PF10186.4 gi|345007107|ref|YP_004809959.1| - 2.5 6.9 42.7 0.46 9.3 6.9 4.1 2 2 2 4 4 4 0 UV radiation resistance protein and autophagy-related subunit 14 NPV_P10 PF05531.7 gi|345007107|ref|YP_004809959.1| - 3 8.1 25.9 20 5.5 1.4 7.0 3 2 4 7 7 7 0 Nucleopolyhedrovirus P10 protein CCDC155 PF14662.1 gi|345007107|ref|YP_004809959.1| - 3.2 7.2 60.4 0.56 9.7 14.9 4.5 2 2 2 4 4 4 0 Coiled-coil region of CCDC155 Prominin PF05478.6 gi|345007107|ref|YP_004809959.1| - 3.6 4.9 17.6 0.42 8.0 2.7 3.0 2 1 0 3 3 3 0 Prominin Mod_r PF07200.8 gi|345007107|ref|YP_004809959.1| - 4.1 7.3 43.3 2.6 7.9 8.2 4.7 2 2 2 4 4 4 0 Modifier of rudimentary (Mod(r)) protein Phage_GP20 PF06810.6 gi|345007107|ref|YP_004809959.1| - 5 6.5 48.0 0.36 10.2 3.0 6.7 3 2 3 7 7 7 0 Phage minor structural protein GP20 Filament PF00038.16 gi|345007107|ref|YP_004809959.1| - 5 6.4 58.3 1.3 8.4 5.4 4.6 2 2 2 4 4 4 0 Intermediate filament protein Prefoldin_2 PF01920.15 gi|345007107|ref|YP_004809959.1| - 8.4 6.2 52.6 0.39 10.4 6.1 7.9 2 2 2 5 5 4 0 Prefoldin subunit DUF4140 PF13600.1 gi|345007107|ref|YP_004809959.1| - 8.7 6.8 57.2 0.75 10.2 0.9 8.4 2 2 4 6 6 5 0 N-terminal domain of unknown function (DUF4140) DUF3584 PF12128.3 gi|345007107|ref|YP_004809959.1| - 9.2 3.4 53.1 3.4 4.8 14.9 2.2 1 1 0 2 2 2 0 Protein of unknown function (DUF3584) DDE_Tnp_IS240 PF13610.1 gi|345007108|ref|YP_004809960.1| - 3.9e-17 62.5 0.0 5.3e-17 62.0 0.0 1.2 1 0 0 1 1 1 1 DDE domain DDE_Tnp_IS66 PF03050.9 gi|345007108|ref|YP_004809960.1| - 4.3e-05 22.8 0.2 9.6e-05 21.7 0.0 1.7 1 1 0 1 1 1 1 Transposase IS66 family DDE_3 PF13358.1 gi|345007108|ref|YP_004809960.1| - 0.0011 18.7 0.0 0.0018 18.0 0.0 1.5 1 1 0 1 1 1 1 DDE superfamily endonuclease DUF2186 PF09952.4 gi|345007108|ref|YP_004809960.1| - 0.023 14.9 0.0 0.041 14.1 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2186) PG_binding_2 PF08823.6 gi|345007108|ref|YP_004809960.1| - 0.12 12.4 1.6 0.81 9.8 0.0 2.6 3 0 0 3 3 3 0 Putative peptidoglycan binding domain DUF904 PF06005.7 gi|345007110|ref|YP_004809962.1| - 0.0069 16.6 4.5 0.0069 16.6 3.1 2.7 3 0 0 3 3 3 1 Protein of unknown function (DUF904) Rbsn PF11464.3 gi|345007110|ref|YP_004809962.1| - 0.017 14.6 2.0 0.038 13.5 1.4 1.5 1 0 0 1 1 1 0 Rabenosyn Rab binding domain DUF1281 PF06924.6 gi|345007110|ref|YP_004809962.1| - 0.053 12.9 0.0 0.1 12.0 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1281) TSC22 PF01166.13 gi|345007110|ref|YP_004809962.1| - 0.29 11.1 3.7 0.78 9.7 2.6 1.6 1 0 0 1 1 1 0 TSC-22/dip/bun family V_ATPase_I PF01496.14 gi|345007110|ref|YP_004809962.1| - 1.8 6.3 3.6 2.7 5.7 2.5 1.2 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family AAA_10 PF12846.2 gi|345007111|ref|YP_004809963.1| - 3.6e-23 82.4 0.1 7e-23 81.5 0.0 1.5 1 0 0 1 1 1 1 AAA-like domain DUF87 PF01935.12 gi|345007111|ref|YP_004809963.1| - 0.0014 18.5 0.0 0.011 15.6 0.0 2.2 2 0 0 2 2 2 1 Domain of unknown function DUF87 TraG-D_C PF12696.2 gi|345007111|ref|YP_004809963.1| - 0.0016 18.3 0.0 0.004 17.0 0.0 1.7 1 0 0 1 1 1 1 TraM recognition site of TraD and TraG TrwB_AAD_bind PF10412.4 gi|345007111|ref|YP_004809963.1| - 0.0026 16.4 0.0 0.081 11.5 0.0 2.4 2 0 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain FtsK_SpoIIIE PF01580.13 gi|345007111|ref|YP_004809963.1| - 0.029 13.8 0.0 0.074 12.5 0.0 1.6 1 0 0 1 1 1 0 FtsK/SpoIIIE family Ribosomal_S13_N PF08069.7 gi|345007111|ref|YP_004809963.1| - 0.22 11.3 0.0 3.3 7.5 0.0 2.7 3 0 0 3 3 3 0 Ribosomal S13/S15 N-terminal domain FliE PF02049.13 gi|345007111|ref|YP_004809963.1| - 2 8.5 4.5 1.5 8.9 0.0 3.1 4 0 0 4 4 4 0 Flagellar hook-basal body complex protein FliE HTH_20 PF12840.2 gi|345007113|ref|YP_004809965.1| - 0.00039 20.1 0.0 0.0012 18.5 0.0 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|345007113|ref|YP_004809965.1| - 0.01 15.2 0.0 0.035 13.4 0.0 1.9 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding Fe_dep_repress PF01325.14 gi|345007113|ref|YP_004809965.1| - 0.017 15.0 0.0 0.041 13.8 0.0 1.6 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain TrmB PF01978.14 gi|345007113|ref|YP_004809965.1| - 0.021 14.5 0.0 0.049 13.3 0.0 1.6 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Sigma70_r4_2 PF08281.7 gi|345007113|ref|YP_004809965.1| - 0.067 12.6 0.0 0.17 11.4 0.0 1.7 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_5 PF01022.15 gi|345007113|ref|YP_004809965.1| - 0.074 12.7 0.0 0.15 11.7 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family MarR_2 PF12802.2 gi|345007113|ref|YP_004809965.1| - 0.14 11.8 0.2 25 4.6 0.2 2.6 2 1 1 3 3 3 0 MarR family PemK PF02452.12 gi|345007114|ref|YP_004809966.1| - 0.00014 21.9 0.0 0.00017 21.7 0.0 1.1 1 0 0 1 1 1 1 PemK-like protein PNPOx_C PF10590.4 gi|345007114|ref|YP_004809966.1| - 0.14 11.6 0.4 0.28 10.7 0.2 1.5 1 0 0 1 1 1 0 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region MarR_2 PF12802.2 gi|345007115|ref|YP_004809967.1| - 3.8e-08 32.8 0.0 5.3e-08 32.4 0.0 1.3 1 0 0 1 1 1 1 MarR family TrmB PF01978.14 gi|345007115|ref|YP_004809967.1| - 1.3e-05 24.8 0.0 2e-05 24.1 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Rrf2 PF02082.15 gi|345007115|ref|YP_004809967.1| - 1.9e-05 24.7 0.0 2.6e-05 24.2 0.0 1.1 1 0 0 1 1 1 1 Transcriptional regulator HTH_Crp_2 PF13545.1 gi|345007115|ref|YP_004809967.1| - 6.8e-05 22.5 0.0 0.0001 21.9 0.0 1.3 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain Fe_dep_repress PF01325.14 gi|345007115|ref|YP_004809967.1| - 6.9e-05 22.7 0.0 0.00014 21.7 0.0 1.5 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_IclR PF09339.5 gi|345007115|ref|YP_004809967.1| - 7.1e-05 22.3 0.0 0.00013 21.4 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain PaaX PF07848.7 gi|345007115|ref|YP_004809967.1| - 0.00012 21.9 0.0 0.00021 21.2 0.0 1.3 1 0 0 1 1 1 1 PaaX-like protein DUF4423 PF14394.1 gi|345007115|ref|YP_004809967.1| - 0.00023 20.7 0.0 0.00023 20.7 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4423) MarR PF01047.17 gi|345007115|ref|YP_004809967.1| - 0.00036 20.1 0.1 0.00085 18.9 0.0 1.6 2 0 0 2 2 2 1 MarR family HTH_5 PF01022.15 gi|345007115|ref|YP_004809967.1| - 0.00049 19.7 0.0 0.0007 19.2 0.0 1.2 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family GntR PF00392.16 gi|345007115|ref|YP_004809967.1| - 0.00071 18.9 0.1 0.0012 18.2 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_24 PF13412.1 gi|345007115|ref|YP_004809967.1| - 0.0013 18.0 0.0 0.002 17.4 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_27 PF13463.1 gi|345007115|ref|YP_004809967.1| - 0.0038 17.5 0.0 0.0056 16.9 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain HrcA_DNA-bdg PF03444.10 gi|345007115|ref|YP_004809967.1| - 0.005 16.2 0.0 0.008 15.5 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding HTH_20 PF12840.2 gi|345007115|ref|YP_004809967.1| - 0.0061 16.3 0.1 0.0096 15.7 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.7 gi|345007115|ref|YP_004809967.1| - 0.0083 15.7 0.0 0.014 14.9 0.0 1.4 1 0 0 1 1 1 1 HTH domain HemN_C PF06969.11 gi|345007115|ref|YP_004809967.1| - 0.03 14.4 0.0 0.18 11.9 0.0 2.2 1 1 1 2 2 2 0 HemN C-terminal domain Sigma70_r4_2 PF08281.7 gi|345007115|ref|YP_004809967.1| - 0.03 13.7 0.0 0.05 13.0 0.0 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_CodY PF08222.6 gi|345007115|ref|YP_004809967.1| - 0.03 13.6 0.0 0.049 12.9 0.0 1.3 1 0 0 1 1 1 0 CodY helix-turn-helix domain LexA_DNA_bind PF01726.11 gi|345007115|ref|YP_004809967.1| - 0.066 12.7 0.0 0.17 11.4 0.0 1.7 2 0 0 2 2 1 0 LexA DNA binding domain HTH_10 PF04967.7 gi|345007115|ref|YP_004809967.1| - 0.088 12.4 0.0 0.16 11.5 0.0 1.4 1 0 0 1 1 1 0 HTH DNA binding domain RPA_C PF08784.6 gi|345007115|ref|YP_004809967.1| - 0.11 12.9 0.0 0.16 12.4 0.0 1.2 1 0 0 1 1 1 0 Replication protein A C terminal z-alpha PF02295.12 gi|345007115|ref|YP_004809967.1| - 0.14 11.9 0.0 0.23 11.2 0.0 1.3 1 0 0 1 1 1 0 Adenosine deaminase z-alpha domain tRNA_anti-codon PF01336.20 gi|345007116|ref|YP_004809968.1| - 0.011 15.6 0.1 0.023 14.5 0.1 1.6 1 0 0 1 1 1 0 OB-fold nucleic acid binding domain PIN PF01850.16 gi|345007117|ref|YP_004809969.1| - 6.2e-07 29.7 1.2 7.3e-07 29.5 0.8 1.1 1 0 0 1 1 1 1 PIN domain HTH_20 PF12840.2 gi|345007119|ref|YP_004809971.1| - 0.00031 20.4 0.4 0.088 12.6 0.0 2.4 2 1 0 2 2 2 2 Helix-turn-helix domain HTH_24 PF13412.1 gi|345007120|ref|YP_004809972.1| - 4.8e-10 38.6 0.4 9.2e-10 37.7 0.2 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.1 gi|345007120|ref|YP_004809972.1| - 5.6e-10 38.6 0.8 1.3e-09 37.3 0.5 1.7 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_11 PF08279.7 gi|345007120|ref|YP_004809972.1| - 5e-07 29.2 0.1 1.4e-06 27.8 0.1 1.7 2 0 0 2 2 2 1 HTH domain HTH_20 PF12840.2 gi|345007120|ref|YP_004809972.1| - 0.00016 21.3 0.0 0.00051 19.7 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_27 PF13463.1 gi|345007120|ref|YP_004809972.1| - 0.00022 21.4 0.1 0.00053 20.2 0.1 1.6 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR_2 PF12802.2 gi|345007120|ref|YP_004809972.1| - 0.0021 17.6 0.0 0.0039 16.8 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.5 gi|345007120|ref|YP_004809972.1| - 0.0077 15.7 0.2 0.023 14.2 0.0 1.7 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_23 PF13384.1 gi|345007120|ref|YP_004809972.1| - 0.064 12.9 0.1 0.12 12.0 0.0 1.4 1 0 0 1 1 1 0 Homeodomain-like domain HTH_CodY PF08222.6 gi|345007120|ref|YP_004809972.1| - 0.1 11.9 0.1 0.28 10.5 0.0 1.7 2 0 0 2 2 2 0 CodY helix-turn-helix domain HTH_DeoR PF08220.7 gi|345007120|ref|YP_004809972.1| - 0.21 11.1 1.5 0.28 10.7 0.3 1.7 2 0 0 2 2 2 0 DeoR-like helix-turn-helix domain HTH_24 PF13412.1 gi|345007121|ref|YP_004809973.1| - 3.7e-13 48.6 0.1 9.4e-13 47.3 0.0 1.7 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.1 gi|345007121|ref|YP_004809973.1| - 2.1e-11 43.1 0.0 4.9e-11 41.9 0.0 1.7 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_11 PF08279.7 gi|345007121|ref|YP_004809973.1| - 9.8e-07 28.3 0.1 1.9e-05 24.1 0.0 2.3 2 0 0 2 2 2 1 HTH domain HTH_20 PF12840.2 gi|345007121|ref|YP_004809973.1| - 4.5e-05 23.1 0.0 0.00014 21.5 0.0 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain MarR PF01047.17 gi|345007121|ref|YP_004809973.1| - 0.00054 19.6 0.0 0.00095 18.8 0.0 1.4 1 0 0 1 1 1 1 MarR family Fe_dep_repress PF01325.14 gi|345007121|ref|YP_004809973.1| - 0.0011 18.8 0.0 0.0025 17.7 0.0 1.6 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_DeoR PF08220.7 gi|345007121|ref|YP_004809973.1| - 0.0029 17.0 0.0 0.007 15.8 0.0 1.6 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain MarR_2 PF12802.2 gi|345007121|ref|YP_004809973.1| - 0.0039 16.8 0.0 0.0089 15.6 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_28 PF13518.1 gi|345007121|ref|YP_004809973.1| - 0.0055 16.6 0.0 0.0094 15.9 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.1 gi|345007121|ref|YP_004809973.1| - 0.0056 16.2 0.0 0.012 15.2 0.0 1.5 1 0 0 1 1 1 1 Homeodomain-like domain HTH_Crp_2 PF13545.1 gi|345007121|ref|YP_004809973.1| - 0.014 15.1 0.0 0.062 13.1 0.0 1.9 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain TrmB PF01978.14 gi|345007121|ref|YP_004809973.1| - 0.021 14.4 0.1 0.052 13.2 0.0 1.6 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB HTH_38 PF13936.1 gi|345007121|ref|YP_004809973.1| - 0.027 14.0 0.1 0.1 12.1 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_Tnp_ISL3 PF13542.1 gi|345007121|ref|YP_004809973.1| - 0.06 12.5 0.0 0.11 11.6 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 HTH_10 PF04967.7 gi|345007121|ref|YP_004809973.1| - 0.069 12.7 0.0 0.14 11.7 0.0 1.4 1 0 0 1 1 1 0 HTH DNA binding domain HTH_IclR PF09339.5 gi|345007121|ref|YP_004809973.1| - 0.082 12.5 0.0 0.14 11.8 0.0 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_CodY PF08222.6 gi|345007121|ref|YP_004809973.1| - 0.096 12.0 0.1 0.17 11.2 0.1 1.3 1 0 0 1 1 1 0 CodY helix-turn-helix domain HTH_27 PF13463.1 gi|345007121|ref|YP_004809973.1| - 0.1 12.9 0.0 0.55 10.5 0.0 2.0 2 0 0 2 2 2 0 Winged helix DNA-binding domain PLU-1 PF08429.6 gi|345007121|ref|YP_004809973.1| - 0.12 11.2 0.1 0.16 10.7 0.1 1.1 1 0 0 1 1 1 0 PLU-1-like protein HTH_5 PF01022.15 gi|345007121|ref|YP_004809973.1| - 0.12 12.0 0.0 0.24 11.1 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family P2 PF07194.6 gi|345007121|ref|YP_004809973.1| - 0.16 11.8 0.6 2.4 8.0 0.0 2.4 1 1 2 3 3 3 0 P2 response regulator binding domain DDE_Tnp_1 PF01609.16 gi|345007123|ref|YP_004809975.1| - 4.4e-19 68.8 1.8 7.5e-19 68.1 1.3 1.4 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_3 PF13612.1 gi|345007123|ref|YP_004809975.1| - 2.6e-05 23.9 0.3 4.2e-05 23.3 0.2 1.3 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_2 PF13586.1 gi|345007123|ref|YP_004809975.1| - 0.0026 17.9 1.9 0.006 16.7 0.2 2.2 1 1 1 2 2 2 1 Transposase DDE domain KaiB PF07689.7 gi|345007123|ref|YP_004809975.1| - 0.057 12.8 0.0 0.1 12.0 0.0 1.4 1 0 0 1 1 1 0 KaiB domain HATPase_c PF02518.21 gi|345007125|ref|YP_004809977.1| - 2.1e-15 56.4 0.1 6.9e-15 54.7 0.0 1.8 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.20 gi|345007125|ref|YP_004809977.1| - 5.2e-11 42.3 0.6 3.5e-10 39.7 0.8 2.0 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain PAS_4 PF08448.5 gi|345007125|ref|YP_004809977.1| - 6.1e-08 32.6 0.1 1.3e-07 31.6 0.0 1.6 1 0 0 1 1 1 1 PAS fold SPOB_a PF14689.1 gi|345007125|ref|YP_004809977.1| - 0.0083 15.6 0.6 0.016 14.7 0.4 1.4 1 0 0 1 1 1 1 Sensor_kinase_SpoOB-type, alpha-helical domain HATPase_c_3 PF13589.1 gi|345007125|ref|YP_004809977.1| - 0.0091 15.6 0.0 0.018 14.6 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.1 gi|345007125|ref|YP_004809977.1| - 0.011 16.0 0.0 0.025 14.9 0.0 1.7 1 0 0 1 1 1 0 PAS domain DDE_Tnp_1 PF01609.16 gi|345007126|ref|YP_004809978.1| - 0.01 15.3 0.1 0.048 13.1 0.1 2.0 1 1 0 1 1 1 0 Transposase DDE domain Response_reg PF00072.19 gi|345007127|ref|YP_004809979.1| - 4.4e-22 78.2 0.0 5.8e-22 77.8 0.0 1.2 1 0 0 1 1 1 1 Response regulator receiver domain HTH_20 PF12840.2 gi|345007128|ref|YP_004809980.1| - 1e-06 28.4 0.1 1.8e-06 27.6 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|345007128|ref|YP_004809980.1| - 1.6e-06 27.6 0.1 3.1e-06 26.7 0.1 1.4 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.1 gi|345007128|ref|YP_004809980.1| - 1.4e-05 25.3 0.0 3.4e-05 24.0 0.0 1.6 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_IclR PF09339.5 gi|345007128|ref|YP_004809980.1| - 1.5e-05 24.4 0.1 2.7e-05 23.6 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain TrmB PF01978.14 gi|345007128|ref|YP_004809980.1| - 1.8e-05 24.3 0.0 5.2e-05 22.8 0.0 1.7 1 1 1 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_Crp_2 PF13545.1 gi|345007128|ref|YP_004809980.1| - 3.4e-05 23.5 0.0 5.1e-05 22.9 0.0 1.3 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HxlR PF01638.12 gi|345007128|ref|YP_004809980.1| - 0.00013 21.5 0.0 0.00018 21.0 0.0 1.2 1 0 0 1 1 1 1 HxlR-like helix-turn-helix HTH_24 PF13412.1 gi|345007128|ref|YP_004809980.1| - 0.00018 20.8 0.0 0.00031 20.0 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_34 PF13601.1 gi|345007128|ref|YP_004809980.1| - 0.0011 18.9 0.0 0.0015 18.4 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain GntR PF00392.16 gi|345007128|ref|YP_004809980.1| - 0.012 15.0 0.0 0.025 14.0 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family DUF2250 PF10007.4 gi|345007128|ref|YP_004809980.1| - 0.014 15.3 0.1 0.67 9.9 0.1 2.2 1 1 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) Rrf2 PF02082.15 gi|345007128|ref|YP_004809980.1| - 0.017 15.2 0.0 0.031 14.3 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator HTH_45 PF14947.1 gi|345007128|ref|YP_004809980.1| - 0.025 14.3 0.0 0.035 13.9 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn-helix PadR PF03551.9 gi|345007128|ref|YP_004809980.1| - 0.031 14.0 0.0 0.051 13.3 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family TFIIE_alpha PF02002.12 gi|345007128|ref|YP_004809980.1| - 0.052 13.0 0.0 0.091 12.2 0.0 1.5 1 0 0 1 1 1 0 TFIIE alpha subunit MarR PF01047.17 gi|345007128|ref|YP_004809980.1| - 0.06 13.0 0.0 0.1 12.3 0.0 1.3 1 0 0 1 1 1 0 MarR family DUF4364 PF14277.1 gi|345007128|ref|YP_004809980.1| - 0.063 12.8 0.0 0.093 12.3 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) Sigma70_r3 PF04539.11 gi|345007128|ref|YP_004809980.1| - 0.065 13.1 0.1 0.12 12.2 0.1 1.5 1 0 0 1 1 1 0 Sigma-70 region 3 HTH_23 PF13384.1 gi|345007128|ref|YP_004809980.1| - 0.068 12.8 0.0 0.14 11.8 0.0 1.5 1 0 0 1 1 1 0 Homeodomain-like domain Crp PF00325.15 gi|345007128|ref|YP_004809980.1| - 0.071 12.5 0.0 0.16 11.5 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, crp family HTH_29 PF13551.1 gi|345007128|ref|YP_004809980.1| - 0.088 12.9 0.0 0.17 12.0 0.0 1.6 1 1 0 1 1 1 0 Winged helix-turn helix Replic_Relax PF13814.1 gi|345007128|ref|YP_004809980.1| - 0.1 12.4 0.0 0.17 11.7 0.0 1.4 1 1 0 1 1 1 0 Replication-relaxation DDE_Tnp_1 PF01609.16 gi|345007129|ref|YP_004809981.1| - 0.01 15.3 0.1 0.048 13.1 0.1 2.0 1 1 0 1 1 1 0 Transposase DDE domain DUF1707 PF08044.6 gi|345007130|ref|YP_004809982.1| - 0.26 11.0 0.2 0.26 11.0 0.1 3.0 3 0 0 3 3 3 0 Domain of unknown function (DUF1707) PSII_Pbs27 PF13326.1 gi|345007130|ref|YP_004809982.1| - 0.42 10.5 4.1 0.87 9.5 2.3 2.0 1 1 0 1 1 1 0 Photosystem II Pbs27 Hemerythrin PF01814.18 gi|345007130|ref|YP_004809982.1| - 2 8.5 11.3 14 5.8 5.8 2.6 2 1 0 2 2 2 0 Hemerythrin HHE cation binding domain Syntaxin-6_N PF09177.6 gi|345007130|ref|YP_004809982.1| - 5.1 7.5 9.2 11 6.4 4.0 2.8 1 1 2 3 3 3 0 Syntaxin 6, N-terminal Spt4 PF06093.8 gi|345007131|ref|YP_004809983.1| - 0.01 15.7 0.4 0.057 13.2 0.0 2.1 2 0 0 2 2 2 1 Spt4/RpoE2 zinc finger zinc_ribbon_2 PF13240.1 gi|345007131|ref|YP_004809983.1| - 0.025 14.0 2.2 0.025 14.0 1.5 2.9 3 0 0 3 3 3 0 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|345007131|ref|YP_004809983.1| - 0.041 13.0 11.2 0.078 12.2 2.5 2.9 3 0 0 3 3 3 0 zinc-ribbon domain DZR PF12773.2 gi|345007131|ref|YP_004809983.1| - 0.23 11.3 10.6 0.36 10.6 0.9 2.8 2 1 0 2 2 2 0 Double zinc ribbon RNA_POL_M_15KD PF02150.11 gi|345007131|ref|YP_004809983.1| - 3.4 7.4 10.2 4.1 7.1 0.1 3.6 3 1 0 3 3 3 0 RNA polymerases M/15 Kd subunit TrmB PF01978.14 gi|345007134|ref|YP_004809986.1| - 2.3e-09 36.8 0.2 1.1e-08 34.6 0.0 2.0 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_11 PF08279.7 gi|345007134|ref|YP_004809986.1| - 0.00021 20.8 0.1 0.00056 19.5 0.0 1.8 2 0 0 2 2 2 1 HTH domain HTH_DeoR PF08220.7 gi|345007134|ref|YP_004809986.1| - 0.00022 20.6 0.0 0.00056 19.3 0.0 1.7 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain MarR PF01047.17 gi|345007134|ref|YP_004809986.1| - 0.002 17.8 0.0 0.0061 16.2 0.0 1.8 2 0 0 2 2 2 1 MarR family DUF2250 PF10007.4 gi|345007134|ref|YP_004809986.1| - 0.0036 17.1 0.1 1 9.3 0.0 2.3 2 0 0 2 2 2 1 Uncharacterized protein conserved in archaea (DUF2250) HTH_20 PF12840.2 gi|345007134|ref|YP_004809986.1| - 0.0046 16.7 0.4 0.012 15.4 0.1 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain GntR PF00392.16 gi|345007134|ref|YP_004809986.1| - 0.006 15.9 0.6 0.029 13.8 0.0 2.1 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family HTH_IclR PF09339.5 gi|345007134|ref|YP_004809986.1| - 0.009 15.5 0.1 0.025 14.1 0.0 1.8 2 0 0 2 2 2 1 IclR helix-turn-helix domain Penicillinase_R PF03965.11 gi|345007134|ref|YP_004809986.1| - 0.01 15.8 0.0 0.027 14.5 0.0 1.7 1 0 0 1 1 1 0 Penicillinase repressor Fe_dep_repress PF01325.14 gi|345007134|ref|YP_004809986.1| - 0.044 13.7 0.0 0.091 12.7 0.0 1.5 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain ORC5_C PF14630.1 gi|345007134|ref|YP_004809986.1| - 0.097 12.1 0.0 0.18 11.2 0.0 1.4 1 0 0 1 1 1 0 Origin recognition complex (ORC) subunit 5 C-terminus Mga PF05043.8 gi|345007134|ref|YP_004809986.1| - 0.12 12.6 0.0 0.3 11.3 0.0 1.6 1 0 0 1 1 1 0 Mga helix-turn-helix domain UPF0278 PF08745.6 gi|345007135|ref|YP_004809987.1| - 0.12 11.6 0.0 0.16 11.2 0.0 1.2 1 0 0 1 1 1 0 UPF0278 family Nudix_N_2 PF14803.1 gi|345007136|ref|YP_004809988.1| - 0.0048 16.5 1.4 0.91 9.2 0.1 2.6 2 0 0 2 2 2 2 Nudix N-terminal zinc_ribbon_2 PF13240.1 gi|345007136|ref|YP_004809988.1| - 0.0058 16.0 1.1 2.7 7.6 0.1 2.3 2 0 0 2 2 2 2 zinc-ribbon domain DZR PF12773.2 gi|345007136|ref|YP_004809988.1| - 0.012 15.4 0.7 0.02 14.6 0.5 1.4 1 0 0 1 1 1 0 Double zinc ribbon DUF2318 PF10080.4 gi|345007136|ref|YP_004809988.1| - 0.03 14.0 0.0 0.038 13.7 0.0 1.2 1 0 0 1 1 1 0 Predicted membrane protein (DUF2318) DRP PF06044.7 gi|345007136|ref|YP_004809988.1| - 0.044 12.7 0.3 0.066 12.1 0.2 1.4 1 1 0 1 1 1 0 Dam-replacing family GFA PF04828.9 gi|345007136|ref|YP_004809988.1| - 0.045 13.7 1.6 1 9.3 0.2 2.2 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme RPA_interact_C PF14768.1 gi|345007136|ref|YP_004809988.1| - 0.059 13.7 0.5 0.082 13.3 0.3 1.2 1 0 0 1 1 1 0 Replication protein A interacting C-terminal zf-ribbon_3 PF13248.1 gi|345007136|ref|YP_004809988.1| - 0.076 12.2 4.3 0.57 9.4 3.2 2.1 1 1 1 2 2 2 0 zinc-ribbon domain Lar_restr_allev PF14354.1 gi|345007136|ref|YP_004809988.1| - 0.08 13.2 3.1 0.22 11.8 2.2 1.7 1 1 0 1 1 1 0 Restriction alleviation protein Lar zinc-ribbons_6 PF07191.7 gi|345007136|ref|YP_004809988.1| - 0.13 12.1 0.4 0.21 11.3 0.3 1.4 1 0 0 1 1 1 0 zinc-ribbons DNA_ligase_ZBD PF03119.11 gi|345007136|ref|YP_004809988.1| - 1.8 8.3 5.4 0.75 9.5 0.6 2.3 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain PG_binding_1 PF01471.13 gi|345007137|ref|YP_004809989.1| - 0.057 13.3 0.0 0.11 12.5 0.0 1.4 1 0 0 1 1 1 0 Putative peptidoglycan binding domain DUF365 PF04033.7 gi|345007138|ref|YP_004809990.1| - 0.053 13.5 0.4 0.061 13.3 0.3 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF365) TAT_signal PF10518.4 gi|345007139|ref|YP_004809991.1| - 0.0026 17.6 0.4 0.0045 16.8 0.3 1.4 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence F-box PF00646.28 gi|345007139|ref|YP_004809991.1| - 0.027 14.1 0.0 0.05 13.2 0.0 1.4 1 0 0 1 1 1 0 F-box domain YfkD PF14167.1 gi|345007139|ref|YP_004809991.1| - 0.098 11.7 1.3 0.99 8.4 0.0 2.4 2 1 1 3 3 3 0 YfkD-like protein Vma12 PF11712.3 gi|345007140|ref|YP_004809992.1| - 0.29 10.8 1.9 0.32 10.7 1.3 1.1 1 0 0 1 1 1 0 Endoplasmic reticulum-based factor for assembly of V-ATPase Tetraspannin PF00335.15 gi|345007140|ref|YP_004809992.1| - 0.36 10.0 3.1 0.38 9.9 2.1 1.0 1 0 0 1 1 1 0 Tetraspanin family DUF1469 PF07332.6 gi|345007140|ref|YP_004809992.1| - 0.86 9.3 9.1 1 9.1 6.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1469) SdpI PF13630.1 gi|345007140|ref|YP_004809992.1| - 1.2 8.8 5.2 1.6 8.4 3.6 1.2 1 0 0 1 1 1 0 SdpI/YhfL protein family DDE_Tnp_1 PF01609.16 gi|345007141|ref|YP_004809993.1| - 0.01 15.4 0.1 0.044 13.3 0.1 2.0 1 1 0 1 1 1 0 Transposase DDE domain DDE_Tnp_1 PF01609.16 gi|345007142|ref|YP_004809994.1| - 0.01 15.4 0.1 0.044 13.3 0.1 2.0 1 1 0 1 1 1 0 Transposase DDE domain Methyltransf_21 PF05050.7 gi|345007143|ref|YP_004809995.1| - 2.1e-24 86.3 0.1 3.2e-24 85.7 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase FkbM domain Met_10 PF02475.11 gi|345007143|ref|YP_004809995.1| - 9.7e-07 28.5 0.0 1.7e-06 27.7 0.0 1.3 1 0 0 1 1 1 1 Met-10+ like-protein V_cholerae_RfbT PF05575.6 gi|345007143|ref|YP_004809995.1| - 2e-05 23.7 0.1 3.2e-05 23.1 0.1 1.3 1 1 0 1 1 1 1 Vibrio cholerae RfbT protein Methyltransf_18 PF12847.2 gi|345007143|ref|YP_004809995.1| - 0.00038 21.0 0.0 0.00071 20.1 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain Glyco_trans_4_4 PF13579.1 gi|345007144|ref|YP_004809996.1| - 1.1e-11 45.1 0.1 1.6e-11 44.5 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glycos_transf_1 PF00534.15 gi|345007144|ref|YP_004809996.1| - 2.3e-05 23.8 0.0 3.4e-05 23.3 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|345007144|ref|YP_004809996.1| - 0.0028 17.3 0.0 0.0055 16.4 0.0 1.5 1 1 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_4 PF13692.1 gi|345007144|ref|YP_004809996.1| - 0.0093 16.1 0.0 0.025 14.7 0.0 1.7 1 0 0 1 1 1 1 Glycosyl transferases group 1 DDE_Tnp_1 PF01609.16 gi|345007145|ref|YP_004809997.1| - 0.01 15.4 0.1 0.044 13.3 0.1 2.0 1 1 0 1 1 1 0 Transposase DDE domain Ribosomal_S5_C PF03719.10 gi|345007146|ref|YP_004809998.1| - 0.072 12.3 0.0 0.1 11.8 0.0 1.1 1 0 0 1 1 1 0 Ribosomal protein S5, C-terminal domain Drc1-Sld2 PF11719.3 gi|345007146|ref|YP_004809998.1| - 0.093 11.8 0.0 0.093 11.8 0.0 1.1 1 0 0 1 1 1 0 DNA replication and checkpoint protein DUF4598 PF15370.1 gi|345007146|ref|YP_004809998.1| - 0.13 12.6 1.9 0.39 11.0 1.3 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF4598) HTH_24 PF13412.1 gi|345007147|ref|YP_004809999.1| - 0.004 16.5 0.8 0.0045 16.3 0.6 1.3 1 1 0 1 1 1 1 Winged helix-turn-helix DNA-binding B-block_TFIIIC PF04182.7 gi|345007147|ref|YP_004809999.1| - 0.0077 16.0 0.1 0.0087 15.8 0.1 1.1 1 0 0 1 1 1 1 B-block binding subunit of TFIIIC MarR_2 PF12802.2 gi|345007147|ref|YP_004809999.1| - 0.018 14.6 0.0 0.019 14.5 0.0 1.1 1 0 0 1 1 1 0 MarR family HTH_45 PF14947.1 gi|345007147|ref|YP_004809999.1| - 0.035 13.9 0.3 0.039 13.7 0.2 1.1 1 0 0 1 1 1 0 Winged helix-turn-helix HTH_27 PF13463.1 gi|345007147|ref|YP_004809999.1| - 0.042 14.1 0.1 0.05 13.9 0.1 1.1 1 0 0 1 1 1 0 Winged helix DNA-binding domain Fucose_iso_N1 PF07881.7 gi|345007147|ref|YP_004809999.1| - 0.11 12.0 0.1 0.11 11.9 0.1 1.0 1 0 0 1 1 1 0 L-fucose isomerase, first N-terminal domain Gag_p30 PF02093.11 gi|345007147|ref|YP_004809999.1| - 0.13 11.4 0.1 0.13 11.4 0.1 1.0 1 0 0 1 1 1 0 Gag P30 core shell protein GntR PF00392.16 gi|345007148|ref|YP_004810000.1| - 0.0014 18.0 0.0 0.0026 17.1 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_5 PF01022.15 gi|345007148|ref|YP_004810000.1| - 0.0014 18.2 0.0 0.0025 17.4 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.2 gi|345007148|ref|YP_004810000.1| - 0.012 15.2 0.3 0.022 14.4 0.2 1.4 1 0 0 1 1 1 0 MarR family HTH_20 PF12840.2 gi|345007148|ref|YP_004810000.1| - 0.02 14.6 0.4 0.047 13.4 0.1 1.7 2 0 0 2 2 2 0 Helix-turn-helix domain UBA_4 PF14555.1 gi|345007149|ref|YP_004810001.1| - 0.075 12.5 0.1 2 8.0 0.0 2.4 2 0 0 2 2 2 0 UBA-like domain DUF4177 PF13783.1 gi|345007150|ref|YP_004810002.1| - 1.1e-12 47.3 0.2 1.3e-12 47.1 0.1 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4177) DUF456 PF04306.8 gi|345007151|ref|YP_004810003.1| - 0.022 14.7 4.0 0.028 14.4 2.8 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF456) UPF0104 PF03706.8 gi|345007151|ref|YP_004810003.1| - 0.054 12.7 4.4 0.056 12.7 3.0 1.0 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0104) DUF2627 PF11118.3 gi|345007151|ref|YP_004810003.1| - 0.085 12.9 0.8 0.085 12.9 0.6 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF2627) Tad PF13400.1 gi|345007151|ref|YP_004810003.1| - 0.12 12.3 0.6 0.12 12.3 0.4 1.7 2 0 0 2 2 2 0 Putative Flp pilus-assembly TadE/G-like DUF2975 PF11188.3 gi|345007151|ref|YP_004810003.1| - 0.37 10.5 3.0 0.4 10.3 2.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2975) DUF4064 PF13273.1 gi|345007151|ref|YP_004810003.1| - 0.73 9.9 5.9 2.2 8.4 4.1 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF4064) DDE_Tnp_1 PF01609.16 gi|345007152|ref|YP_004810004.1| - 3.1e-30 105.3 0.5 4e-30 104.9 0.4 1.1 1 0 0 1 1 1 1 Transposase DDE domain Piwi PF02171.12 gi|345007156|ref|YP_004810008.1| - 0.026 13.5 0.0 0.069 12.1 0.0 1.7 1 1 0 1 1 1 0 Piwi domain THDPS_N_2 PF14805.1 gi|345007157|ref|YP_004810009.1| - 0.085 12.7 0.0 0.24 11.2 0.0 1.7 2 0 0 2 2 2 0 Tetrahydrodipicolinate N-succinyltransferase N-terminal DDE_Tnp_1 PF01609.16 gi|345007158|ref|YP_004810010.1| - 0.0083 15.6 0.0 0.035 13.6 0.0 2.0 1 1 0 1 1 1 1 Transposase DDE domain SNF2_N PF00176.18 gi|345007159|ref|YP_004810011.1| - 1.8e-20 72.9 0.0 1.7e-18 66.4 0.0 2.2 2 0 0 2 2 2 2 SNF2 family N-terminal domain Helicase_C PF00271.26 gi|345007159|ref|YP_004810011.1| - 1.4e-12 47.2 0.0 4.4e-12 45.6 0.0 1.9 1 0 0 1 1 1 1 Helicase conserved C-terminal domain PLDc_2 PF13091.1 gi|345007159|ref|YP_004810011.1| - 1.1e-08 34.8 0.0 2.7e-08 33.6 0.0 1.7 1 0 0 1 1 1 1 PLD-like domain ResIII PF04851.10 gi|345007159|ref|YP_004810011.1| - 0.0045 16.8 0.0 0.09 12.6 0.0 2.5 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit Helicase_C_2 PF13307.1 gi|345007159|ref|YP_004810011.1| - 0.046 13.6 0.0 0.089 12.7 0.0 1.5 1 0 0 1 1 1 0 Helicase C-terminal domain DUF1156 PF06634.7 gi|345007160|ref|YP_004810012.1| - 8.3e-15 54.3 0.0 2e-14 53.0 0.0 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF1156) Methyltransf_26 PF13659.1 gi|345007160|ref|YP_004810012.1| - 6e-09 35.9 0.0 4.3e-08 33.1 0.0 2.3 1 1 0 1 1 1 1 Methyltransferase domain N6_N4_Mtase PF01555.13 gi|345007160|ref|YP_004810012.1| - 1.1e-05 25.0 0.0 2.6e-05 23.8 0.0 1.6 1 0 0 1 1 1 1 DNA methylase Methyltransf_11 PF08241.7 gi|345007160|ref|YP_004810012.1| - 0.1 13.0 0.1 2.5 8.6 0.0 2.6 2 0 0 2 2 2 0 Methyltransferase domain Cons_hypoth95 PF03602.10 gi|345007160|ref|YP_004810012.1| - 0.17 11.2 0.0 22 4.3 0.0 2.3 2 0 0 2 2 2 0 Conserved hypothetical protein 95 DDE_Tnp_1 PF01609.16 gi|345007162|ref|YP_004810014.1| - 0.01 15.4 0.1 0.044 13.3 0.1 2.0 1 1 0 1 1 1 0 Transposase DDE domain DUF3052 PF11253.3 gi|345007165|ref|YP_004810017.1| - 1.2 8.7 5.5 2.1 7.9 3.8 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3052) Cep57_MT_bd PF06657.8 gi|345007166|ref|YP_004810018.1| - 0.043 13.7 0.1 0.063 13.2 0.1 1.3 1 0 0 1 1 1 0 Centrosome microtubule-binding domain of Cep57 AAA_22 PF13401.1 gi|345007167|ref|YP_004810019.1| - 9e-10 38.7 0.0 8.2e-09 35.6 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|345007167|ref|YP_004810019.1| - 2.6e-09 37.3 1.1 4e-08 33.4 0.7 2.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_18 PF13238.1 gi|345007167|ref|YP_004810019.1| - 5.2e-06 26.8 0.5 2.6e-05 24.5 0.1 2.3 1 1 1 2 2 2 1 AAA domain Penicillinase_R PF03965.11 gi|345007167|ref|YP_004810019.1| - 1.4e-05 25.1 0.0 3.5e-05 23.8 0.0 1.7 1 0 0 1 1 1 1 Penicillinase repressor AAA_17 PF13207.1 gi|345007167|ref|YP_004810019.1| - 0.0001 23.1 3.2 0.0027 18.4 2.1 2.4 1 1 0 1 1 1 1 AAA domain RuvB_N PF05496.7 gi|345007167|ref|YP_004810019.1| - 0.00013 21.0 0.0 0.00051 19.1 0.0 1.9 1 1 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus AAA_5 PF07728.9 gi|345007167|ref|YP_004810019.1| - 0.00014 21.5 0.0 0.00064 19.4 0.0 2.1 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) NB-ARC PF00931.17 gi|345007167|ref|YP_004810019.1| - 0.00015 20.7 0.0 0.00025 19.9 0.0 1.4 1 0 0 1 1 1 1 NB-ARC domain NTPase_1 PF03266.10 gi|345007167|ref|YP_004810019.1| - 0.00036 20.2 0.2 0.0089 15.7 0.1 2.8 2 1 0 2 2 2 1 NTPase AAA PF00004.24 gi|345007167|ref|YP_004810019.1| - 0.00053 20.2 0.0 0.0079 16.3 0.0 2.8 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) DUF2075 PF09848.4 gi|345007167|ref|YP_004810019.1| - 0.00063 18.8 0.0 0.0009 18.3 0.0 1.3 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) AAA_14 PF13173.1 gi|345007167|ref|YP_004810019.1| - 0.002 18.0 0.0 0.0047 16.8 0.0 1.6 1 1 0 1 1 1 1 AAA domain Bac_DnaA PF00308.13 gi|345007167|ref|YP_004810019.1| - 0.002 17.8 0.0 0.016 14.8 0.0 2.2 2 1 0 2 2 2 1 Bacterial dnaA protein Arch_ATPase PF01637.13 gi|345007167|ref|YP_004810019.1| - 0.0022 17.7 0.1 0.035 13.8 0.0 2.6 1 1 0 2 2 2 1 Archaeal ATPase Cdc6_C PF09079.6 gi|345007167|ref|YP_004810019.1| - 0.003 17.2 0.4 0.017 14.8 0.2 2.4 1 1 1 2 2 2 1 CDC6, C terminal AAA_33 PF13671.1 gi|345007167|ref|YP_004810019.1| - 0.0077 16.1 1.7 1.3 8.9 0.0 3.1 2 2 1 3 3 3 1 AAA domain NACHT PF05729.7 gi|345007167|ref|YP_004810019.1| - 0.009 15.6 0.1 0.019 14.6 0.0 1.6 2 0 0 2 2 1 1 NACHT domain PRK PF00485.13 gi|345007167|ref|YP_004810019.1| - 0.013 15.0 0.1 0.046 13.2 0.0 1.9 1 1 1 2 2 2 0 Phosphoribulokinase / Uridine kinase family DUF258 PF03193.11 gi|345007167|ref|YP_004810019.1| - 0.02 14.0 0.0 0.034 13.3 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 DUF4194 PF13835.1 gi|345007167|ref|YP_004810019.1| - 0.022 14.2 0.0 0.051 13.0 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4194) DUF2791 PF10923.3 gi|345007167|ref|YP_004810019.1| - 0.033 12.8 0.0 0.054 12.0 0.0 1.3 1 0 0 1 1 1 0 P-loop Domain of unknown function (DUF2791) AAA_30 PF13604.1 gi|345007167|ref|YP_004810019.1| - 0.036 13.6 0.5 0.18 11.3 0.0 2.4 2 1 0 2 2 2 0 AAA domain RNA_helicase PF00910.17 gi|345007167|ref|YP_004810019.1| - 0.042 14.0 0.0 0.1 12.7 0.0 1.8 1 1 0 1 1 1 0 RNA helicase IstB_IS21 PF01695.12 gi|345007167|ref|YP_004810019.1| - 0.077 12.4 0.5 2.9 7.2 0.3 2.5 1 1 0 1 1 1 0 IstB-like ATP binding protein HTH_20 PF12840.2 gi|345007167|ref|YP_004810019.1| - 0.08 12.7 0.0 0.19 11.5 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain AAA_19 PF13245.1 gi|345007167|ref|YP_004810019.1| - 0.1 12.3 0.0 0.3 10.8 0.0 1.7 1 0 0 1 1 1 0 Part of AAA domain ABC_tran PF00005.22 gi|345007167|ref|YP_004810019.1| - 0.12 12.6 0.0 0.84 9.9 0.0 2.4 1 1 1 2 2 2 0 ABC transporter DUF159 PF02586.9 gi|345007169|ref|YP_004810021.1| - 1.5e-59 201.0 0.0 1.7e-59 200.8 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised ACR, COG2135 DDE_Tnp_1 PF01609.16 gi|345007170|ref|YP_004810022.1| - 2.8e-18 66.2 1.5 4.9e-18 65.4 1.0 1.4 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_3 PF13612.1 gi|345007170|ref|YP_004810022.1| - 3.3e-05 23.6 0.2 5.2e-05 23.0 0.2 1.3 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_2 PF13586.1 gi|345007170|ref|YP_004810022.1| - 0.00096 19.2 2.2 0.0022 18.1 0.2 2.3 1 1 1 2 2 2 1 Transposase DDE domain DUF1772 PF08592.6 gi|345007170|ref|YP_004810022.1| - 0.03 14.0 0.0 0.046 13.4 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1772) KaiB PF07689.7 gi|345007170|ref|YP_004810022.1| - 0.058 12.8 0.0 0.1 12.0 0.0 1.4 1 0 0 1 1 1 0 KaiB domain DUF318 PF03773.8 gi|345007171|ref|YP_004810023.1| - 6.9e-45 153.3 13.7 9.5e-45 152.8 9.5 1.2 1 0 0 1 1 1 1 Predicted permease YHS PF04945.8 gi|345007171|ref|YP_004810023.1| - 1.2e-17 63.4 3.7 2.1e-11 43.4 0.3 2.4 2 0 0 2 2 2 2 YHS domain zf-FCS PF06467.9 gi|345007171|ref|YP_004810023.1| - 1.1e-05 24.9 0.2 0.042 13.4 0.0 2.3 2 0 0 2 2 2 2 MYM-type Zinc finger with FCS sequence motif RPAP2_Rtr1 PF04181.8 gi|345007171|ref|YP_004810023.1| - 0.0088 16.1 0.1 2.9 8.0 0.0 2.2 2 0 0 2 2 2 2 Rtr1/RPAP2 family zf-HIT PF04438.11 gi|345007171|ref|YP_004810023.1| - 0.067 12.8 0.4 0.25 11.0 0.0 2.0 2 0 0 2 2 2 0 HIT zinc finger Ribosomal_L24e PF01246.15 gi|345007171|ref|YP_004810023.1| - 0.12 12.2 0.0 4 7.3 0.0 2.3 2 0 0 2 2 2 0 Ribosomal protein L24e DUF2256 PF10013.4 gi|345007171|ref|YP_004810023.1| - 0.24 11.1 0.8 9.6 6.0 0.1 2.6 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2256) SHOCT PF09851.4 gi|345007172|ref|YP_004810024.1| - 7.7e-08 31.5 0.5 1e-07 31.1 0.3 1.2 1 0 0 1 1 1 1 Short C-terminal domain DUF1707 PF08044.6 gi|345007172|ref|YP_004810024.1| - 8.2e-05 22.2 1.1 0.00013 21.6 0.8 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF1707) DUF996 PF06195.8 gi|345007172|ref|YP_004810024.1| - 0.0034 17.3 0.2 0.0043 17.0 0.2 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF996) Yip1 PF04893.12 gi|345007172|ref|YP_004810024.1| - 0.0043 16.5 6.1 0.005 16.3 4.2 1.1 1 0 0 1 1 1 1 Yip1 domain DUF2304 PF10066.4 gi|345007172|ref|YP_004810024.1| - 0.097 12.5 1.2 3.7 7.4 0.0 2.1 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2304) Metal_resist PF13801.1 gi|345007172|ref|YP_004810024.1| - 0.11 12.4 3.2 0.27 11.2 0.0 2.1 2 0 0 2 2 2 0 Heavy-metal resistance Tetraspannin PF00335.15 gi|345007172|ref|YP_004810024.1| - 0.13 11.4 2.1 0.31 10.2 1.4 1.6 1 1 0 1 1 1 0 Tetraspanin family NCU-G1 PF15065.1 gi|345007172|ref|YP_004810024.1| - 4.2 5.9 4.8 4.7 5.8 3.3 1.2 1 0 0 1 1 1 0 Lysosomal transcription factor, NCU-G1 TPPK_C PF12555.3 gi|345007172|ref|YP_004810024.1| - 4.3 7.1 8.9 0.14 11.9 0.6 2.1 2 0 0 2 2 2 0 Thiamine pyrophosphokinase C terminal DUF1360 PF07098.6 gi|345007172|ref|YP_004810024.1| - 7 6.4 6.5 1 9.1 0.9 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF1360) DDE_Tnp_1 PF01609.16 gi|345007173|ref|YP_004810025.1| - 0.0082 15.7 0.0 0.035 13.6 0.0 2.0 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1 PF01609.16 gi|345007174|ref|YP_004810026.1| - 1.1e-13 51.2 0.4 1.6e-13 50.6 0.3 1.2 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_3 PF13612.1 gi|345007174|ref|YP_004810026.1| - 0.041 13.6 0.1 0.064 13.0 0.1 1.3 1 0 0 1 1 1 0 Transposase DDE domain DDE_Tnp_1_2 PF13586.1 gi|345007174|ref|YP_004810026.1| - 0.044 13.9 0.1 0.1 12.7 0.1 1.6 1 0 0 1 1 1 0 Transposase DDE domain DUF1772 PF08592.6 gi|345007174|ref|YP_004810026.1| - 0.077 12.7 0.0 0.11 12.2 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1772) Vert_IL3-reg_TF PF06529.6 gi|345007176|ref|YP_004810028.1| - 0.094 11.6 0.0 0.12 11.3 0.0 1.2 1 0 0 1 1 1 0 Vertebrate interleukin-3 regulated transcription factor CorA PF01544.13 gi|345007177|ref|YP_004810029.1| - 0.051 12.5 1.6 0.057 12.4 1.1 1.1 1 0 0 1 1 1 0 CorA-like Mg2+ transporter protein MutL_C PF08676.6 gi|345007177|ref|YP_004810029.1| - 0.067 12.8 0.2 0.085 12.4 0.1 1.2 1 0 0 1 1 1 0 MutL C terminal dimerisation domain Dynamitin PF04912.9 gi|345007177|ref|YP_004810029.1| - 0.098 11.4 0.2 0.16 10.7 0.1 1.3 2 0 0 2 2 2 0 Dynamitin PilJ PF13675.1 gi|345007177|ref|YP_004810029.1| - 0.23 11.7 3.8 2.7 8.3 0.1 2.0 1 1 1 2 2 2 0 Type IV pili methyl-accepting chemotaxis transducer N-term Spectrin PF00435.16 gi|345007177|ref|YP_004810029.1| - 0.24 11.7 2.8 5.5 7.3 0.0 2.3 2 1 0 2 2 2 0 Spectrin repeat HXXSHH PF07586.6 gi|345007177|ref|YP_004810029.1| - 0.39 9.5 2.7 3.4 6.4 1.1 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF1552) DNA_pol_B PF00136.16 gi|345007178|ref|YP_004810030.1| - 1.2e-37 129.7 0.0 2.1e-37 128.9 0.0 1.3 1 1 0 1 1 1 1 DNA polymerase family B Cdc6_C PF09079.6 gi|345007179|ref|YP_004810031.1| - 1.4e-15 56.7 0.1 4.2e-15 55.2 0.0 1.9 2 0 0 2 2 2 1 CDC6, C terminal AAA_16 PF13191.1 gi|345007179|ref|YP_004810031.1| - 4.7e-11 43.0 0.0 1.3e-10 41.5 0.0 1.7 2 0 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.1 gi|345007179|ref|YP_004810031.1| - 2.4e-10 40.6 0.0 7.9e-10 38.9 0.0 1.7 2 0 0 2 2 2 1 AAA domain AAA PF00004.24 gi|345007179|ref|YP_004810031.1| - 1.5e-05 25.2 0.0 5.4e-05 23.4 0.0 2.0 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) DUF815 PF05673.8 gi|345007179|ref|YP_004810031.1| - 0.0024 16.8 0.0 0.0038 16.1 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF815) AAA_5 PF07728.9 gi|345007179|ref|YP_004810031.1| - 0.0042 16.8 0.0 0.31 10.7 0.0 2.5 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) Sigma54_activat PF00158.21 gi|345007179|ref|YP_004810031.1| - 0.0059 16.0 0.0 0.012 15.0 0.0 1.5 1 0 0 1 1 1 1 Sigma-54 interaction domain AAA_17 PF13207.1 gi|345007179|ref|YP_004810031.1| - 0.021 15.6 0.1 0.14 12.9 0.0 2.5 1 1 0 1 1 1 0 AAA domain ResIII PF04851.10 gi|345007179|ref|YP_004810031.1| - 0.027 14.3 0.0 0.095 12.5 0.0 1.8 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit Terminase_2 PF03592.11 gi|345007179|ref|YP_004810031.1| - 0.049 13.9 0.0 0.13 12.5 0.0 1.7 1 0 0 1 1 1 0 Terminase small subunit RNA_helicase PF00910.17 gi|345007179|ref|YP_004810031.1| - 0.088 12.9 0.0 0.33 11.1 0.0 2.1 1 0 0 1 1 1 0 RNA helicase RuvB_N PF05496.7 gi|345007179|ref|YP_004810031.1| - 0.13 11.2 0.0 0.82 8.6 0.0 2.2 3 0 0 3 3 3 0 Holliday junction DNA helicase ruvB N-terminus CSTF2_hinge PF14327.1 gi|345007181|ref|YP_004810033.1| - 0.097 12.7 0.0 0.14 12.2 0.0 1.2 1 0 0 1 1 1 0 Hinge domain of cleavage stimulation factor subunit 2 ESX-1_EspG PF14011.1 gi|345007181|ref|YP_004810033.1| - 0.11 11.6 1.0 0.14 11.3 0.7 1.1 1 0 0 1 1 1 0 EspG family DUF2274 PF10038.4 gi|345007181|ref|YP_004810033.1| - 0.12 12.5 2.0 4.3 7.5 0.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2274) MarR_2 PF12802.2 gi|345007182|ref|YP_004810034.1| - 6e-15 54.6 2.0 7.6e-08 31.9 0.6 2.7 2 0 0 2 2 2 2 MarR family TrmB PF01978.14 gi|345007182|ref|YP_004810034.1| - 3.8e-09 36.1 0.2 0.00086 18.9 0.0 2.8 3 0 0 3 3 2 2 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.1 gi|345007182|ref|YP_004810034.1| - 5.2e-08 32.1 0.0 0.0056 16.0 0.0 2.4 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding Rrf2 PF02082.15 gi|345007182|ref|YP_004810034.1| - 8.7e-08 32.1 0.0 0.017 15.2 0.0 2.5 2 0 0 2 2 2 2 Transcriptional regulator MarR PF01047.17 gi|345007182|ref|YP_004810034.1| - 9.7e-08 31.6 0.0 0.0078 15.8 0.0 2.5 2 0 0 2 2 2 2 MarR family HTH_29 PF13551.1 gi|345007182|ref|YP_004810034.1| - 7.2e-07 29.3 0.4 0.023 14.8 0.0 2.3 1 1 1 2 2 2 2 Winged helix-turn helix HTH_27 PF13463.1 gi|345007182|ref|YP_004810034.1| - 8.3e-07 29.2 0.6 0.00016 21.8 0.2 2.5 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_IclR PF09339.5 gi|345007182|ref|YP_004810034.1| - 8.8e-07 28.4 0.0 0.066 12.8 0.0 2.9 2 0 0 2 2 2 2 IclR helix-turn-helix domain HTH_38 PF13936.1 gi|345007182|ref|YP_004810034.1| - 1.7e-06 27.4 0.1 0.37 10.3 0.0 3.3 3 0 0 3 3 3 2 Helix-turn-helix domain HTH_23 PF13384.1 gi|345007182|ref|YP_004810034.1| - 3.1e-06 26.6 1.4 0.005 16.4 0.0 3.2 3 0 0 3 3 3 2 Homeodomain-like domain HTH_20 PF12840.2 gi|345007182|ref|YP_004810034.1| - 1.3e-05 24.8 0.2 0.22 11.3 0.1 2.6 2 0 0 2 2 2 2 Helix-turn-helix domain HTH_41 PF14502.1 gi|345007182|ref|YP_004810034.1| - 0.00087 18.8 0.0 0.0073 15.8 0.0 2.3 2 0 0 2 2 2 1 Helix-turn-helix domain GntR PF00392.16 gi|345007182|ref|YP_004810034.1| - 0.0011 18.4 0.0 2.1 7.8 0.0 2.6 2 0 0 2 2 2 2 Bacterial regulatory proteins, gntR family HTH_Crp_2 PF13545.1 gi|345007182|ref|YP_004810034.1| - 0.0012 18.5 0.0 0.24 11.1 0.0 2.6 2 1 0 2 2 2 1 Crp-like helix-turn-helix domain Penicillinase_R PF03965.11 gi|345007182|ref|YP_004810034.1| - 0.0015 18.6 0.0 2.1 8.4 0.0 2.5 1 1 1 2 2 2 2 Penicillinase repressor Crp PF00325.15 gi|345007182|ref|YP_004810034.1| - 0.0021 17.4 0.1 0.0092 15.4 0.3 1.9 2 0 0 2 2 2 1 Bacterial regulatory proteins, crp family HTH_28 PF13518.1 gi|345007182|ref|YP_004810034.1| - 0.0023 17.8 0.5 0.25 11.3 0.0 2.8 3 0 0 3 3 2 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|345007182|ref|YP_004810034.1| - 0.0023 17.5 0.0 2.6 7.7 0.0 2.6 2 0 0 2 2 2 2 Bacterial regulatory protein, arsR family DUF746 PF05344.6 gi|345007182|ref|YP_004810034.1| - 0.0062 16.0 0.0 0.015 14.7 0.0 1.7 1 0 0 1 1 1 1 Domain of Unknown Function (DUF746) LZ_Tnp_IS481 PF13011.1 gi|345007182|ref|YP_004810034.1| - 0.011 15.9 0.0 0.027 14.7 0.0 1.6 1 0 0 1 1 1 0 leucine-zipper of insertion element IS481 RPA_C PF08784.6 gi|345007182|ref|YP_004810034.1| - 0.012 15.9 0.0 0.055 13.8 0.0 2.0 2 0 0 2 2 2 0 Replication protein A C terminal GPP34 PF05719.6 gi|345007182|ref|YP_004810034.1| - 0.016 15.2 1.4 0.064 13.3 0.8 1.9 1 1 1 2 2 2 0 Golgi phosphoprotein 3 (GPP34) FeoC PF09012.5 gi|345007182|ref|YP_004810034.1| - 0.048 13.3 0.0 1.4 8.7 0.0 2.6 2 0 0 2 2 2 0 FeoC like transcriptional regulator HTH_11 PF08279.7 gi|345007182|ref|YP_004810034.1| - 0.064 12.9 0.1 3.6 7.3 0.0 2.5 2 0 0 2 2 2 0 HTH domain HTH_36 PF13730.1 gi|345007182|ref|YP_004810034.1| - 0.074 13.1 0.0 0.85 9.8 0.0 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain Phage_rep_org_N PF09681.5 gi|345007182|ref|YP_004810034.1| - 0.1 12.1 0.0 3.9 7.0 0.0 2.4 3 0 0 3 3 2 0 N-terminal phage replisome organiser (Phage_rep_org_N) HTH_Tnp_Tc3_1 PF11427.3 gi|345007182|ref|YP_004810034.1| - 0.14 11.7 0.2 89 2.8 0.0 3.3 3 0 0 3 3 3 0 Tc3 transposase Fe_dep_repr_C PF02742.10 gi|345007182|ref|YP_004810034.1| - 0.51 10.0 4.5 6.9 6.4 0.1 3.0 3 0 0 3 3 2 0 Iron dependent repressor, metal binding and dimerisation domain DUF2513 PF10711.4 gi|345007183|ref|YP_004810035.1| - 1.2e-05 25.2 0.0 2.4e-05 24.3 0.0 1.4 1 1 0 1 1 1 1 Hypothetical protein (DUF2513) PadR PF03551.9 gi|345007183|ref|YP_004810035.1| - 1.4e-05 24.7 0.0 2.5e-05 23.9 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family FUR PF01475.14 gi|345007183|ref|YP_004810035.1| - 2.3e-05 24.3 0.1 4.3e-05 23.4 0.0 1.5 2 0 0 2 2 2 1 Ferric uptake regulator family HTH_11 PF08279.7 gi|345007183|ref|YP_004810035.1| - 0.0012 18.4 0.0 0.0023 17.5 0.0 1.5 1 1 0 1 1 1 1 HTH domain HTH_20 PF12840.2 gi|345007183|ref|YP_004810035.1| - 0.0015 18.2 0.0 0.0032 17.2 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain DUF86 PF01934.12 gi|345007183|ref|YP_004810035.1| - 0.0019 17.8 0.1 0.0045 16.6 0.0 1.7 1 1 0 1 1 1 1 Protein of unknown function DUF86 TrmB PF01978.14 gi|345007183|ref|YP_004810035.1| - 0.0038 16.8 0.0 0.0091 15.6 0.0 1.7 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB YjcQ PF09639.5 gi|345007183|ref|YP_004810035.1| - 0.014 15.4 0.0 0.025 14.6 0.0 1.5 1 1 0 1 1 1 0 YjcQ protein HTH_5 PF01022.15 gi|345007183|ref|YP_004810035.1| - 0.026 14.1 0.0 0.049 13.3 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_24 PF13412.1 gi|345007183|ref|YP_004810035.1| - 0.032 13.6 0.0 0.077 12.3 0.0 1.7 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_34 PF13601.1 gi|345007183|ref|YP_004810035.1| - 0.046 13.7 0.0 0.088 12.8 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain Stk19 PF10494.4 gi|345007183|ref|YP_004810035.1| - 0.055 12.8 0.1 0.062 12.6 0.1 1.1 1 0 0 1 1 1 0 Serine-threonine protein kinase 19 RuBisCO_small PF00101.15 gi|345007183|ref|YP_004810035.1| - 0.058 13.2 0.0 0.6 9.9 0.0 2.1 1 1 1 2 2 2 0 Ribulose bisphosphate carboxylase, small chain Phage_X PF05155.10 gi|345007183|ref|YP_004810035.1| - 0.084 12.8 0.0 0.6 10.0 0.0 2.1 1 1 1 2 2 2 0 Phage X family RNA_pol_Rpc34 PF05158.7 gi|345007183|ref|YP_004810035.1| - 0.11 11.6 0.0 0.15 11.2 0.0 1.2 1 0 0 1 1 1 0 RNA polymerase Rpc34 subunit HxlR PF01638.12 gi|345007183|ref|YP_004810035.1| - 0.12 11.9 0.0 0.32 10.6 0.0 1.9 1 1 1 2 2 2 0 HxlR-like helix-turn-helix DUF807 PF05660.6 gi|345007183|ref|YP_004810035.1| - 0.14 11.7 0.0 0.31 10.6 0.0 1.5 1 1 1 2 2 2 0 Coxiella burnetii protein of unknown function (DUF807) SWIM PF04434.12 gi|345007185|ref|YP_004810037.1| - 0.005 16.2 0.6 0.015 14.7 0.4 1.7 1 1 0 1 1 1 1 SWIM zinc finger DUF955 PF06114.8 gi|345007186|ref|YP_004810038.1| - 5.7e-05 22.8 0.0 9.2e-05 22.1 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF955) SprT-like PF10263.4 gi|345007186|ref|YP_004810038.1| - 0.00016 21.3 0.1 0.0047 16.5 0.0 2.2 2 0 0 2 2 2 1 SprT-like family Peptidase_MA_2 PF13485.1 gi|345007186|ref|YP_004810038.1| - 0.029 14.3 0.2 0.067 13.2 0.0 1.7 2 0 0 2 2 2 0 Peptidase MA superfamily DZR PF12773.2 gi|345007187|ref|YP_004810039.1| - 3.9e-05 23.3 0.7 4.3e-05 23.2 0.5 1.1 1 0 0 1 1 1 1 Double zinc ribbon Zn_Tnp_IS1595 PF12760.2 gi|345007187|ref|YP_004810039.1| - 0.00013 21.7 0.6 0.16 11.8 0.1 2.1 2 0 0 2 2 2 2 Transposase zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|345007187|ref|YP_004810039.1| - 0.00013 21.3 3.0 0.00017 20.9 2.0 1.2 1 0 0 1 1 1 1 zinc-ribbon domain DUF1272 PF06906.6 gi|345007187|ref|YP_004810039.1| - 0.00026 20.7 1.5 0.00027 20.7 1.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1272) zf-ribbon_3 PF13248.1 gi|345007187|ref|YP_004810039.1| - 0.00092 18.3 2.5 0.0018 17.4 1.8 1.4 1 1 0 1 1 1 1 zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|345007187|ref|YP_004810039.1| - 0.0011 18.8 5.4 0.011 15.6 3.8 2.0 1 1 0 1 1 1 1 Zinc ribbon domain HypA PF01155.14 gi|345007187|ref|YP_004810039.1| - 0.0017 17.9 0.8 0.0018 17.9 0.6 1.1 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family NRDD PF13597.1 gi|345007187|ref|YP_004810039.1| - 0.0044 15.1 0.8 0.0046 15.1 0.6 1.0 1 0 0 1 1 1 1 Anaerobic ribonucleoside-triphosphate reductase TFIIS_C PF01096.13 gi|345007187|ref|YP_004810039.1| - 0.011 15.3 2.0 2.4 7.8 0.1 2.3 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) DnaJ_CXXCXGXG PF00684.14 gi|345007187|ref|YP_004810039.1| - 0.011 15.7 1.2 0.014 15.4 0.8 1.3 1 0 0 1 1 1 0 DnaJ central domain Prok-RING_1 PF14446.1 gi|345007187|ref|YP_004810039.1| - 0.012 15.3 0.9 0.015 14.9 0.6 1.1 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 zf-C3HC4_3 PF13920.1 gi|345007187|ref|YP_004810039.1| - 0.016 14.8 0.4 0.02 14.5 0.3 1.2 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) OrfB_Zn_ribbon PF07282.6 gi|345007187|ref|YP_004810039.1| - 0.017 14.7 2.6 0.12 12.0 0.1 2.0 1 1 1 2 2 2 0 Putative transposase DNA-binding domain zf-P11 PF03854.9 gi|345007187|ref|YP_004810039.1| - 0.027 13.9 0.1 0.033 13.6 0.1 1.1 1 0 0 1 1 1 0 P-11 zinc finger zf-IS66 PF13005.2 gi|345007187|ref|YP_004810039.1| - 0.028 14.4 3.0 1.6 8.8 0.4 2.2 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 NOB1_Zn_bind PF08772.6 gi|345007187|ref|YP_004810039.1| - 0.032 14.0 1.5 0.036 13.8 1.1 1.2 1 0 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like Nudix_N_2 PF14803.1 gi|345007187|ref|YP_004810039.1| - 0.033 13.8 1.5 5.2 6.8 1.4 2.2 1 1 1 2 2 2 0 Nudix N-terminal Prim_Zn_Ribbon PF08273.7 gi|345007187|ref|YP_004810039.1| - 0.036 14.1 4.9 0.15 12.1 0.4 2.1 1 1 1 2 2 2 0 Zinc-binding domain of primase-helicase Ribosomal_L32p PF01783.18 gi|345007187|ref|YP_004810039.1| - 0.048 13.8 0.2 0.062 13.4 0.2 1.2 1 0 0 1 1 1 0 Ribosomal L32p protein family DUF2757 PF10955.3 gi|345007187|ref|YP_004810039.1| - 0.09 12.9 0.4 0.11 12.6 0.3 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2757) Lar_restr_allev PF14354.1 gi|345007187|ref|YP_004810039.1| - 0.1 12.9 3.0 1.2 9.4 0.2 2.1 1 1 1 2 2 2 0 Restriction alleviation protein Lar zf-C4_Topoisom PF01396.14 gi|345007187|ref|YP_004810039.1| - 0.14 11.6 0.5 0.63 9.5 0.1 1.9 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger zf-BED PF02892.10 gi|345007187|ref|YP_004810039.1| - 0.25 11.1 1.9 0.38 10.5 1.3 1.5 1 1 0 1 1 1 0 BED zinc finger zf-RING_3 PF14369.1 gi|345007187|ref|YP_004810039.1| - 0.26 11.2 4.3 1.3 9.1 3.0 1.8 1 1 1 2 2 2 0 zinc-finger zf-C2H2 PF00096.21 gi|345007187|ref|YP_004810039.1| - 0.28 11.5 1.8 4.6 7.7 0.1 2.2 2 0 0 2 2 2 0 Zinc finger, C2H2 type zf-C2HC_2 PF13913.1 gi|345007187|ref|YP_004810039.1| - 0.34 10.6 4.4 5.2 6.8 0.3 2.1 2 0 0 2 2 2 0 zinc-finger of a C2HC-type zf-FPG_IleRS PF06827.9 gi|345007187|ref|YP_004810039.1| - 0.38 10.4 3.9 9.4 5.9 0.3 2.1 1 1 1 2 2 2 0 Zinc finger found in FPG and IleRS DUF35_N PF12172.3 gi|345007187|ref|YP_004810039.1| - 0.41 10.6 4.3 1.2 9.1 2.9 1.8 1 1 0 1 1 1 0 Rubredoxin-like zinc ribbon domain (DUF35_N) UPF0547 PF10571.4 gi|345007187|ref|YP_004810039.1| - 0.44 10.2 6.6 1.4 8.6 0.4 2.2 1 1 0 2 2 2 0 Uncharacterised protein family UPF0547 RecR PF02132.10 gi|345007187|ref|YP_004810039.1| - 0.56 9.6 2.8 2.5 7.6 2.2 1.9 2 1 0 2 2 2 0 RecR protein RNA_POL_M_15KD PF02150.11 gi|345007187|ref|YP_004810039.1| - 0.66 9.7 2.9 3.2 7.5 0.1 2.1 1 1 1 2 2 2 0 RNA polymerases M/15 Kd subunit DNA_RNApol_7kD PF03604.8 gi|345007187|ref|YP_004810039.1| - 1.1 8.7 3.4 2.2 7.8 2.3 1.5 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit zf-ISL3 PF14690.1 gi|345007187|ref|YP_004810039.1| - 1.9 8.6 5.4 5.8 7.0 0.2 2.1 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Glyco_trans_1_4 PF13692.1 gi|345007189|ref|YP_004810041.1| - 0.11 12.6 0.0 0.38 10.9 0.0 2.0 1 1 0 1 1 1 0 Glycosyl transferases group 1 Sugarporin_N PF11471.3 gi|345007190|ref|YP_004810042.1| - 0.12 12.0 0.0 0.24 11.0 0.0 1.5 1 0 0 1 1 1 0 Maltoporin periplasmic N-terminal extension Rrf2 PF02082.15 gi|345007191|ref|YP_004810043.1| - 0.00037 20.5 0.0 0.075 13.1 0.0 2.9 2 1 1 3 3 3 1 Transcriptional regulator DUF2984 PF11203.3 gi|345007191|ref|YP_004810043.1| - 0.0091 16.0 0.0 3.4 7.8 0.0 2.3 2 0 0 2 2 2 2 Protein of unknown function (DUF2984) HTH_IclR PF09339.5 gi|345007191|ref|YP_004810043.1| - 0.015 14.8 0.0 0.027 14.0 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain TrmB PF01978.14 gi|345007191|ref|YP_004810043.1| - 0.028 14.1 0.1 0.049 13.3 0.0 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_29 PF13551.1 gi|345007191|ref|YP_004810043.1| - 0.031 14.4 0.0 0.056 13.5 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn helix HTH_28 PF13518.1 gi|345007191|ref|YP_004810043.1| - 0.059 13.3 0.0 0.14 12.1 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_24 PF13412.1 gi|345007191|ref|YP_004810043.1| - 0.066 12.6 0.1 0.17 11.2 0.0 1.7 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|345007191|ref|YP_004810043.1| - 0.087 12.5 0.0 0.17 11.5 0.0 1.4 1 0 0 1 1 1 0 MarR family MarR PF01047.17 gi|345007191|ref|YP_004810043.1| - 0.12 12.0 0.0 0.3 10.8 0.0 1.6 2 0 0 2 2 2 0 MarR family Fe_dep_repress PF01325.14 gi|345007191|ref|YP_004810043.1| - 0.13 12.2 0.2 0.32 10.9 0.0 1.8 2 0 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain HTH_36 PF13730.1 gi|345007191|ref|YP_004810043.1| - 0.18 11.9 0.0 0.33 11.0 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain TSC22 PF01166.13 gi|345007192|ref|YP_004810044.1| - 0.0061 16.4 0.1 0.01 15.8 0.0 1.3 1 0 0 1 1 1 1 TSC-22/dip/bun family DUF2564 PF10819.3 gi|345007192|ref|YP_004810044.1| - 0.034 14.2 0.1 0.045 13.8 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2564) DUF3832 PF12909.2 gi|345007192|ref|YP_004810044.1| - 0.055 13.5 0.1 0.075 13.1 0.1 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF3832) AraC_binding_2 PF14525.1 gi|345007193|ref|YP_004810045.1| - 0.0074 15.8 0.3 0.016 14.7 0.1 1.6 1 1 0 1 1 1 1 AraC-binding-like domain Mrr_cat PF04471.7 gi|345007194|ref|YP_004810046.1| - 1e-28 99.4 0.0 1.9e-28 98.5 0.0 1.4 1 0 0 1 1 1 1 Restriction endonuclease zf-ribbon_3 PF13248.1 gi|345007194|ref|YP_004810046.1| - 0.0045 16.1 2.3 0.0045 16.1 1.6 1.8 2 0 0 2 2 2 1 zinc-ribbon domain DZR PF12773.2 gi|345007194|ref|YP_004810046.1| - 0.028 14.2 2.1 0.028 14.2 1.5 1.9 1 1 0 1 1 1 0 Double zinc ribbon Siva PF05458.7 gi|345007194|ref|YP_004810046.1| - 0.044 13.3 1.8 0.067 12.7 1.3 1.3 1 0 0 1 1 1 0 Cd27 binding protein (Siva) DUF865 PF05906.6 gi|345007194|ref|YP_004810046.1| - 0.11 12.1 0.1 0.32 10.6 0.1 1.8 1 0 0 1 1 1 0 Herpesvirus-7 repeat of unknown function (DUF865) NOB1_Zn_bind PF08772.6 gi|345007194|ref|YP_004810046.1| - 0.32 10.8 2.7 0.87 9.4 1.9 1.7 1 0 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like zinc_ribbon_2 PF13240.1 gi|345007194|ref|YP_004810046.1| - 1.4 8.5 6.0 0.48 9.9 1.9 2.0 2 0 0 2 2 2 0 zinc-ribbon domain Metallophos_2 PF12850.2 gi|345007196|ref|YP_004810048.1| - 2.7e-16 59.7 0.3 4.4e-16 59.0 0.2 1.3 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|345007196|ref|YP_004810048.1| - 8.1e-12 44.9 5.7 6.6e-11 41.9 4.0 2.1 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase zinc_ribbon_2 PF13240.1 gi|345007197|ref|YP_004810049.1| - 0.0075 15.7 1.6 2.1 7.9 0.0 2.3 2 0 0 2 2 2 2 zinc-ribbon domain DZR PF12773.2 gi|345007197|ref|YP_004810049.1| - 0.0093 15.7 0.7 0.015 15.0 0.5 1.3 1 0 0 1 1 1 1 Double zinc ribbon GFA PF04828.9 gi|345007197|ref|YP_004810049.1| - 0.01 15.7 0.7 0.41 10.6 0.1 2.2 1 1 1 2 2 2 1 Glutathione-dependent formaldehyde-activating enzyme Nudix_N_2 PF14803.1 gi|345007197|ref|YP_004810049.1| - 0.015 15.0 0.5 2.8 7.6 0.1 2.6 2 0 0 2 2 2 0 Nudix N-terminal zf-ribbon_3 PF13248.1 gi|345007197|ref|YP_004810049.1| - 0.077 12.2 4.4 1.3 8.3 3.3 2.2 1 1 2 3 3 3 0 zinc-ribbon domain DUF2318 PF10080.4 gi|345007197|ref|YP_004810049.1| - 0.079 12.7 0.1 0.11 12.2 0.0 1.2 1 0 0 1 1 1 0 Predicted membrane protein (DUF2318) Lar_restr_allev PF14354.1 gi|345007197|ref|YP_004810049.1| - 0.12 12.6 2.4 0.39 11.0 1.7 1.8 1 1 0 1 1 1 0 Restriction alleviation protein Lar DNA_ligase_ZBD PF03119.11 gi|345007197|ref|YP_004810049.1| - 0.6 9.8 3.7 0.95 9.2 0.3 2.5 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain UPF0547 PF10571.4 gi|345007197|ref|YP_004810049.1| - 0.86 9.3 3.8 5.7 6.7 2.6 2.0 1 1 1 2 2 2 0 Uncharacterised protein family UPF0547 DUF2387 PF09526.5 gi|345007198|ref|YP_004810050.1| - 0.023 14.6 0.1 0.039 13.8 0.1 1.3 1 0 0 1 1 1 0 Probable metal-binding protein (DUF2387) RNA_POL_M_15KD PF02150.11 gi|345007198|ref|YP_004810050.1| - 0.048 13.3 0.1 0.048 13.3 0.1 2.1 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit Zn_Tnp_IS1 PF03811.8 gi|345007198|ref|YP_004810050.1| - 0.058 12.8 0.2 0.11 12.0 0.1 1.4 1 0 0 1 1 1 0 InsA N-terminal domain Elf1 PF05129.8 gi|345007198|ref|YP_004810050.1| - 0.067 12.8 0.2 0.18 11.4 0.1 1.8 1 1 0 1 1 1 0 Transcription elongation factor Elf1 like OrfB_Zn_ribbon PF07282.6 gi|345007198|ref|YP_004810050.1| - 0.09 12.4 1.1 0.26 10.9 0.7 1.8 1 1 0 1 1 1 0 Putative transposase DNA-binding domain Zn-ribbon_8 PF09723.5 gi|345007198|ref|YP_004810050.1| - 0.25 11.3 1.8 15 5.6 0.1 2.3 2 0 0 2 2 2 0 Zinc ribbon domain NIR_SIR_ferr PF03460.12 gi|345007202|ref|YP_004810054.1| - 0.047 13.3 0.0 1.7 8.3 0.0 2.2 2 0 0 2 2 2 0 Nitrite/Sulfite reductase ferredoxin-like half domain DDE_Tnp_IS66 PF03050.9 gi|345007204|ref|YP_004810056.1| - 3e-53 180.8 0.2 3e-53 180.8 0.1 1.8 2 0 0 2 2 2 1 Transposase IS66 family Atg14 PF10186.4 gi|345007204|ref|YP_004810056.1| - 0.00026 20.0 1.8 0.00055 18.9 1.3 1.5 1 0 0 1 1 1 1 UV radiation resistance protein and autophagy-related subunit 14 SlyX PF04102.7 gi|345007204|ref|YP_004810056.1| - 0.00064 20.0 4.5 0.0017 18.6 3.1 1.8 1 0 0 1 1 1 1 SlyX DASH_Spc34 PF08657.5 gi|345007204|ref|YP_004810056.1| - 0.0012 18.5 3.2 0.0026 17.4 2.2 1.6 1 0 0 1 1 1 1 DASH complex subunit Spc34 IncA PF04156.9 gi|345007204|ref|YP_004810056.1| - 0.0033 17.0 4.1 0.0033 17.0 2.9 1.7 2 0 0 2 2 1 1 IncA protein Fmp27_WPPW PF10359.4 gi|345007204|ref|YP_004810056.1| - 0.0039 15.6 2.7 0.0055 15.1 1.9 1.1 1 0 0 1 1 1 1 RNA pol II promoter Fmp27 protein domain DUF869 PF05911.6 gi|345007204|ref|YP_004810056.1| - 0.0053 15.0 1.3 0.0072 14.6 0.9 1.1 1 0 0 1 1 1 1 Plant protein of unknown function (DUF869) ATG16 PF08614.6 gi|345007204|ref|YP_004810056.1| - 0.0068 16.2 8.4 0.015 15.1 5.8 1.5 1 0 0 1 1 1 1 Autophagy protein 16 (ATG16) DUF16 PF01519.11 gi|345007204|ref|YP_004810056.1| - 0.016 15.4 3.3 0.036 14.2 2.3 1.5 1 0 0 1 1 1 0 Protein of unknown function DUF16 DUF3584 PF12128.3 gi|345007204|ref|YP_004810056.1| - 0.022 12.1 5.7 0.032 11.5 4.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) DDE_Tnp_IS240 PF13610.1 gi|345007204|ref|YP_004810056.1| - 0.042 13.8 3.6 0.52 10.2 0.1 2.6 2 1 0 2 2 2 0 DDE domain Exonuc_VII_L PF02601.10 gi|345007204|ref|YP_004810056.1| - 0.099 11.8 1.2 0.17 11.0 0.8 1.3 1 0 0 1 1 1 0 Exonuclease VII, large subunit DUF4446 PF14584.1 gi|345007204|ref|YP_004810056.1| - 0.1 12.4 2.7 0.2 11.4 1.9 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF4446) AAA_13 PF13166.1 gi|345007204|ref|YP_004810056.1| - 0.11 10.8 4.6 0.17 10.2 3.2 1.1 1 0 0 1 1 1 0 AAA domain DUF1664 PF07889.7 gi|345007204|ref|YP_004810056.1| - 0.12 12.2 2.1 0.21 11.3 1.5 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1664) AAA_23 PF13476.1 gi|345007204|ref|YP_004810056.1| - 0.12 12.6 6.7 0.24 11.7 4.6 1.4 1 0 0 1 1 1 0 AAA domain TMF_DNA_bd PF12329.3 gi|345007204|ref|YP_004810056.1| - 0.23 11.2 11.8 0.62 9.9 8.2 1.7 1 0 0 1 1 1 0 TATA element modulatory factor 1 DNA binding UPF0449 PF15136.1 gi|345007204|ref|YP_004810056.1| - 0.23 11.6 10.4 0.31 11.2 3.2 2.6 2 0 0 2 2 2 0 Uncharacterised protein family UPF0449 DUF3186 PF11382.3 gi|345007204|ref|YP_004810056.1| - 0.26 10.4 0.9 0.4 9.7 0.7 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3186) HSBP1 PF06825.7 gi|345007204|ref|YP_004810056.1| - 0.31 10.6 4.9 2.2 7.9 1.2 2.4 2 0 0 2 2 2 0 Heat shock factor binding protein 1 Fzo_mitofusin PF04799.8 gi|345007204|ref|YP_004810056.1| - 0.67 9.3 2.6 1.2 8.4 1.8 1.3 1 0 0 1 1 1 0 fzo-like conserved region V_ATPase_I PF01496.14 gi|345007204|ref|YP_004810056.1| - 0.7 7.6 4.2 1 7.1 2.9 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family Synaptobrevin PF00957.16 gi|345007204|ref|YP_004810056.1| - 0.96 9.1 3.2 1.9 8.1 2.2 1.4 1 0 0 1 1 1 0 Synaptobrevin Mnd1 PF03962.10 gi|345007204|ref|YP_004810056.1| - 1.3 8.6 8.4 0.9 9.1 4.4 1.7 2 0 0 2 2 2 0 Mnd1 family TMPIT PF07851.8 gi|345007204|ref|YP_004810056.1| - 1.3 8.0 2.9 2.5 7.0 2.0 1.4 1 0 0 1 1 1 0 TMPIT-like protein DUF3450 PF11932.3 gi|345007204|ref|YP_004810056.1| - 1.5 8.0 11.0 0.3 10.3 4.8 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF3450) XhlA PF10779.4 gi|345007204|ref|YP_004810056.1| - 1.6 8.7 10.1 3.7 7.5 7.0 1.6 1 0 0 1 1 1 0 Haemolysin XhlA DUF972 PF06156.8 gi|345007204|ref|YP_004810056.1| - 2.1 8.7 8.7 1 9.7 4.2 1.8 2 0 0 2 2 1 0 Protein of unknown function (DUF972) FemAB PF02388.11 gi|345007204|ref|YP_004810056.1| - 2.2 6.9 4.6 3.3 6.2 3.2 1.1 1 0 0 1 1 1 0 FemAB family DUF3552 PF12072.3 gi|345007204|ref|YP_004810056.1| - 2.4 7.3 20.3 0.03 13.5 7.9 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF3552) Daxx PF03344.10 gi|345007204|ref|YP_004810056.1| - 4.3 5.6 13.9 6.4 5.1 9.7 1.1 1 0 0 1 1 1 0 Daxx Family Spc7 PF08317.6 gi|345007204|ref|YP_004810056.1| - 4.8 5.7 13.1 0.22 10.1 5.0 1.6 2 0 0 2 2 2 0 Spc7 kinetochore protein Spt4 PF06093.8 gi|345007205|ref|YP_004810057.1| - 0.00089 19.0 0.8 0.0038 17.0 0.1 2.2 2 0 0 2 2 2 1 Spt4/RpoE2 zinc finger DZR PF12773.2 gi|345007205|ref|YP_004810057.1| - 0.017 14.9 10.2 0.11 12.3 1.9 2.9 3 0 0 3 3 3 0 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|345007205|ref|YP_004810057.1| - 0.021 14.0 11.0 0.056 12.6 2.5 3.0 3 0 0 3 3 3 0 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|345007205|ref|YP_004810057.1| - 0.025 14.0 2.2 0.025 14.0 1.5 3.0 3 0 0 3 3 3 0 zinc-ribbon domain RNA_POL_M_15KD PF02150.11 gi|345007205|ref|YP_004810057.1| - 0.059 13.0 9.8 0.25 11.0 0.2 4.0 4 0 0 4 4 4 0 RNA polymerases M/15 Kd subunit Ribosomal_S26e PF01283.14 gi|345007205|ref|YP_004810057.1| - 0.12 12.5 0.2 2.7 8.2 0.0 2.2 2 0 0 2 2 2 0 Ribosomal protein S26e PadR PF03551.9 gi|345007207|ref|YP_004810059.1| - 7.9e-10 38.3 1.5 1.2e-09 37.7 1.1 1.3 1 1 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_5 PF01022.15 gi|345007207|ref|YP_004810059.1| - 3.4e-07 29.8 0.0 4.2e-07 29.5 0.0 1.1 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|345007207|ref|YP_004810059.1| - 1.6e-06 27.7 0.1 2.2e-06 27.3 0.1 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.14 gi|345007207|ref|YP_004810059.1| - 6.1e-06 25.8 0.0 7.6e-06 25.5 0.0 1.1 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.1 gi|345007207|ref|YP_004810059.1| - 8e-06 25.1 0.1 0.0013 18.0 0.0 2.2 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_34 PF13601.1 gi|345007207|ref|YP_004810059.1| - 1.2e-05 25.1 0.0 1.4e-05 25.0 0.0 1.1 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_45 PF14947.1 gi|345007207|ref|YP_004810059.1| - 5.5e-05 22.9 0.0 6.5e-05 22.6 0.0 1.1 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_11 PF08279.7 gi|345007207|ref|YP_004810059.1| - 0.00014 21.3 0.0 0.00021 20.8 0.0 1.3 1 1 0 1 1 1 1 HTH domain MarR_2 PF12802.2 gi|345007207|ref|YP_004810059.1| - 0.00021 20.8 0.0 0.00031 20.3 0.0 1.2 1 0 0 1 1 1 1 MarR family DUF4364 PF14277.1 gi|345007207|ref|YP_004810059.1| - 0.00032 20.3 0.0 0.00039 20.0 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4364) HxlR PF01638.12 gi|345007207|ref|YP_004810059.1| - 0.0094 15.5 0.0 0.011 15.4 0.0 1.1 1 0 0 1 1 1 1 HxlR-like helix-turn-helix DUF1495 PF07381.6 gi|345007207|ref|YP_004810059.1| - 0.018 14.7 0.1 0.02 14.5 0.1 1.3 1 1 0 1 1 1 0 Winged helix DNA-binding domain (DUF1495) FUR PF01475.14 gi|345007207|ref|YP_004810059.1| - 0.027 14.3 0.0 0.03 14.2 0.0 1.2 1 1 0 1 1 1 0 Ferric uptake regulator family DUF2250 PF10007.4 gi|345007207|ref|YP_004810059.1| - 0.032 14.1 0.4 1.4 8.9 0.0 2.0 1 1 1 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_27 PF13463.1 gi|345007207|ref|YP_004810059.1| - 0.043 14.1 0.0 0.052 13.8 0.0 1.3 1 1 0 1 1 1 0 Winged helix DNA-binding domain Rrf2 PF02082.15 gi|345007207|ref|YP_004810059.1| - 0.048 13.7 0.0 0.055 13.5 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator MarR PF01047.17 gi|345007207|ref|YP_004810059.1| - 0.066 12.9 0.0 0.092 12.4 0.0 1.3 1 0 0 1 1 1 0 MarR family Cdc6_C PF09079.6 gi|345007207|ref|YP_004810059.1| - 0.084 12.6 0.0 0.12 12.1 0.0 1.3 1 0 0 1 1 1 0 CDC6, C terminal TFIIB PF00382.14 gi|345007208|ref|YP_004810060.1| - 7.4e-29 99.3 0.9 3.5e-14 52.3 0.1 2.4 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.7 gi|345007208|ref|YP_004810060.1| - 2.2e-11 42.8 4.3 4.2e-11 41.9 3.0 1.5 1 0 0 1 1 1 1 TFIIB zinc-binding DZR PF12773.2 gi|345007208|ref|YP_004810060.1| - 0.014 15.1 1.6 0.031 14.0 1.1 1.5 1 0 0 1 1 1 0 Double zinc ribbon DUF1272 PF06906.6 gi|345007208|ref|YP_004810060.1| - 0.026 14.3 2.0 0.033 14.0 0.1 2.1 1 1 0 1 1 1 0 Protein of unknown function (DUF1272) OrfB_Zn_ribbon PF07282.6 gi|345007208|ref|YP_004810060.1| - 0.043 13.4 1.8 0.1 12.2 1.2 1.5 1 0 0 1 1 1 0 Putative transposase DNA-binding domain UPF0547 PF10571.4 gi|345007208|ref|YP_004810060.1| - 0.044 13.4 2.4 0.086 12.5 1.7 1.5 1 0 0 1 1 1 0 Uncharacterised protein family UPF0547 Prok-RING_1 PF14446.1 gi|345007208|ref|YP_004810060.1| - 0.11 12.2 3.2 0.21 11.3 2.2 1.4 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 zinc-ribbons_6 PF07191.7 gi|345007208|ref|YP_004810060.1| - 0.2 11.4 2.8 0.14 11.9 0.7 1.6 2 0 0 2 2 2 0 zinc-ribbons Pr_beta_C PF12465.3 gi|345007209|ref|YP_004810061.1| - 0.13 11.5 0.2 3.1 7.1 0.0 2.3 2 0 0 2 2 2 0 Proteasome beta subunits C terminal DDE_Tnp_IS66 PF03050.9 gi|345007210|ref|YP_004810062.1| - 8.4e-53 179.3 0.1 8.4e-53 179.3 0.1 2.3 2 1 1 3 3 3 1 Transposase IS66 family DUF904 PF06005.7 gi|345007210|ref|YP_004810062.1| - 2.7e-10 40.3 5.7 9e-10 38.7 3.9 1.9 1 0 0 1 1 1 1 Protein of unknown function (DUF904) DUF972 PF06156.8 gi|345007210|ref|YP_004810062.1| - 0.00018 21.8 4.6 0.00052 20.3 3.2 1.7 1 0 0 1 1 1 1 Protein of unknown function (DUF972) CASP_C PF08172.7 gi|345007210|ref|YP_004810062.1| - 0.00025 20.1 2.2 0.00042 19.4 1.5 1.2 1 0 0 1 1 1 1 CASP C terminal bZIP_1 PF00170.16 gi|345007210|ref|YP_004810062.1| - 0.0021 17.9 7.9 0.0043 16.9 5.5 1.5 1 0 0 1 1 1 1 bZIP transcription factor SPX PF03105.14 gi|345007210|ref|YP_004810062.1| - 0.0024 17.7 0.1 0.0035 17.1 0.1 1.2 1 0 0 1 1 1 1 SPX domain Striatin PF08232.7 gi|345007210|ref|YP_004810062.1| - 0.0024 18.1 4.3 0.0051 17.1 3.0 1.5 1 0 0 1 1 1 1 Striatin family Tektin PF03148.9 gi|345007210|ref|YP_004810062.1| - 0.0041 15.7 2.6 0.0067 15.0 1.8 1.2 1 0 0 1 1 1 1 Tektin family DDE_Tnp_IS240 PF13610.1 gi|345007210|ref|YP_004810062.1| - 0.0083 16.1 0.7 0.018 15.0 0.0 1.9 2 1 0 2 2 1 1 DDE domain HOOK PF05622.7 gi|345007210|ref|YP_004810062.1| - 0.011 13.5 2.2 0.016 13.0 1.6 1.1 1 0 0 1 1 1 0 HOOK protein zf-IS66 PF13005.2 gi|345007210|ref|YP_004810062.1| - 0.017 15.1 8.8 0.047 13.6 6.1 1.8 1 1 0 1 1 1 0 zinc-finger binding domain of transposase IS66 HALZ PF02183.13 gi|345007210|ref|YP_004810062.1| - 0.033 13.8 5.2 0.094 12.4 3.6 1.8 1 0 0 1 1 1 0 Homeobox associated leucine zipper FlaC_arch PF05377.6 gi|345007210|ref|YP_004810062.1| - 0.035 13.9 2.8 0.079 12.8 2.0 1.6 1 0 0 1 1 1 0 Flagella accessory protein C (FlaC) ERM PF00769.14 gi|345007210|ref|YP_004810062.1| - 0.049 13.1 6.2 0.11 11.9 4.3 1.5 1 0 0 1 1 1 0 Ezrin/radixin/moesin family Fmp27_WPPW PF10359.4 gi|345007210|ref|YP_004810062.1| - 0.057 11.8 1.7 0.078 11.3 1.2 1.1 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain IncA PF04156.9 gi|345007210|ref|YP_004810062.1| - 0.059 12.9 6.1 0.12 11.9 4.2 1.5 1 0 0 1 1 1 0 IncA protein GAS PF13851.1 gi|345007210|ref|YP_004810062.1| - 0.071 12.3 5.1 0.13 11.4 3.5 1.3 1 0 0 1 1 1 0 Growth-arrest specific micro-tubule binding V_ATPase_I PF01496.14 gi|345007210|ref|YP_004810062.1| - 0.081 10.7 2.2 0.1 10.4 1.5 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family DUF1875 PF08961.5 gi|345007210|ref|YP_004810062.1| - 0.099 11.9 3.5 0.17 11.1 2.4 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1875) SpoVR PF04293.8 gi|345007210|ref|YP_004810062.1| - 0.12 10.7 4.7 0.18 10.1 3.2 1.2 1 0 0 1 1 1 0 SpoVR like protein NUDE_C PF04880.8 gi|345007210|ref|YP_004810062.1| - 0.16 12.3 3.2 0.3 11.4 2.2 1.4 1 0 0 1 1 1 0 NUDE protein, C-terminal conserved region TMF_DNA_bd PF12329.3 gi|345007210|ref|YP_004810062.1| - 0.19 11.5 8.9 0.46 10.3 6.2 1.5 1 0 0 1 1 1 0 TATA element modulatory factor 1 DNA binding Shugoshin_N PF07558.6 gi|345007210|ref|YP_004810062.1| - 0.33 10.7 5.9 0.15 11.8 1.9 2.0 1 1 0 1 1 1 0 Shugoshin N-terminal coiled-coil region Atg14 PF10186.4 gi|345007210|ref|YP_004810062.1| - 0.36 9.7 3.5 0.66 8.8 2.5 1.4 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 DivIC PF04977.10 gi|345007210|ref|YP_004810062.1| - 0.36 10.3 8.3 0.86 9.1 5.4 1.8 1 1 0 1 1 1 0 Septum formation initiator Daxx PF03344.10 gi|345007210|ref|YP_004810062.1| - 0.4 9.1 6.8 0.6 8.5 4.7 1.2 1 0 0 1 1 1 0 Daxx Family Sipho_Gp157 PF05565.6 gi|345007210|ref|YP_004810062.1| - 0.45 10.0 3.1 0.72 9.4 2.1 1.2 1 0 0 1 1 1 0 Siphovirus Gp157 Synaptobrevin PF00957.16 gi|345007210|ref|YP_004810062.1| - 0.46 10.1 2.2 0.84 9.2 1.5 1.3 1 0 0 1 1 1 0 Synaptobrevin ADIP PF11559.3 gi|345007210|ref|YP_004810062.1| - 0.56 10.0 7.1 1.2 9.0 4.9 1.5 1 0 0 1 1 1 0 Afadin- and alpha -actinin-Binding DUF2205 PF10224.4 gi|345007210|ref|YP_004810062.1| - 0.6 9.7 6.0 1.2 8.7 4.2 1.4 1 0 0 1 1 1 0 Predicted coiled-coil protein (DUF2205) TBPIP PF07106.8 gi|345007210|ref|YP_004810062.1| - 0.73 9.3 5.0 0.41 10.1 2.0 1.7 2 0 0 2 2 1 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) EMP24_GP25L PF01105.19 gi|345007210|ref|YP_004810062.1| - 0.82 9.3 6.0 6.1 6.5 2.9 2.1 2 0 0 2 2 2 0 emp24/gp25L/p24 family/GOLD Prefoldin_2 PF01920.15 gi|345007210|ref|YP_004810062.1| - 0.85 9.4 8.1 1.6 8.4 5.6 1.4 1 0 0 1 1 1 0 Prefoldin subunit bZIP_2 PF07716.10 gi|345007210|ref|YP_004810062.1| - 0.86 9.4 14.5 0.8 9.5 6.4 2.6 1 1 1 2 2 2 0 Basic region leucine zipper APG6 PF04111.7 gi|345007210|ref|YP_004810062.1| - 2.2 7.2 7.1 3.5 6.5 4.9 1.2 1 0 0 1 1 1 0 Autophagy protein Apg6 NYD-SP28_assoc PF14775.1 gi|345007210|ref|YP_004810062.1| - 3.1 7.5 9.2 5.8 6.6 5.2 2.3 1 1 1 2 2 2 0 Sperm tail C-terminal domain TSC22 PF01166.13 gi|345007210|ref|YP_004810062.1| - 3.5 7.6 14.5 28 4.7 8.0 3.2 2 1 0 2 2 2 0 TSC-22/dip/bun family Glycos_transf_1 PF00534.15 gi|345007211|ref|YP_004810063.1| - 8e-26 90.4 0.0 1.6e-25 89.5 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|345007211|ref|YP_004810063.1| - 2.3e-12 47.0 0.0 5.5e-12 45.7 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|345007211|ref|YP_004810063.1| - 1.7e-10 41.1 0.0 4e-10 39.9 0.0 1.7 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|345007211|ref|YP_004810063.1| - 5.3e-06 26.6 0.0 9.1e-06 25.9 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.1 gi|345007211|ref|YP_004810063.1| - 0.00014 21.6 0.1 0.00082 19.1 0.1 2.1 1 1 0 1 1 1 1 Glycosyltransferase Family 4 Arc_PepC PF06819.6 gi|345007211|ref|YP_004810063.1| - 0.033 14.1 0.3 0.66 9.9 0.0 2.8 2 0 0 2 2 2 0 Archaeal Peptidase A24 C-terminal Domain EntA_Immun PF08951.5 gi|345007211|ref|YP_004810063.1| - 0.8 9.8 6.3 4.2 7.5 0.2 3.5 4 0 0 4 4 4 0 Enterocin A Immunity Methyltransf_21 PF05050.7 gi|345007212|ref|YP_004810064.1| - 3e-13 50.0 0.2 4.2e-13 49.5 0.1 1.2 1 0 0 1 1 1 1 Methyltransferase FkbM domain Methyltransf_18 PF12847.2 gi|345007212|ref|YP_004810064.1| - 0.0022 18.5 0.0 0.0046 17.5 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Met_10 PF02475.11 gi|345007212|ref|YP_004810064.1| - 0.0049 16.4 0.0 0.0073 15.9 0.0 1.3 1 0 0 1 1 1 1 Met-10+ like-protein V_cholerae_RfbT PF05575.6 gi|345007212|ref|YP_004810064.1| - 0.013 14.5 0.7 0.02 13.9 0.5 1.3 1 1 0 1 1 1 0 Vibrio cholerae RfbT protein MTS PF05175.9 gi|345007212|ref|YP_004810064.1| - 0.028 13.8 0.0 0.045 13.1 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase small domain DDE_Tnp_1 PF01609.16 gi|345007213|ref|YP_004810065.1| - 0.01 15.4 0.1 0.044 13.3 0.1 2.0 1 1 0 1 1 1 0 Transposase DDE domain DUF2513 PF10711.4 gi|345007214|ref|YP_004810066.1| - 4.6e-05 23.4 0.0 9.4e-05 22.4 0.0 1.4 1 1 0 1 1 1 1 Hypothetical protein (DUF2513) PadR PF03551.9 gi|345007214|ref|YP_004810066.1| - 5.9e-05 22.7 0.0 0.0001 21.9 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family FUR PF01475.14 gi|345007214|ref|YP_004810066.1| - 0.00012 22.0 0.1 0.00024 20.9 0.0 1.6 2 0 0 2 2 2 1 Ferric uptake regulator family HTH_11 PF08279.7 gi|345007214|ref|YP_004810066.1| - 0.00029 20.4 0.0 0.00053 19.5 0.0 1.5 1 0 0 1 1 1 1 HTH domain HTH_20 PF12840.2 gi|345007214|ref|YP_004810066.1| - 0.0013 18.5 0.0 0.0025 17.5 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.14 gi|345007214|ref|YP_004810066.1| - 0.0039 16.8 0.0 0.0097 15.5 0.0 1.7 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB DUF86 PF01934.12 gi|345007214|ref|YP_004810066.1| - 0.0089 15.6 0.1 0.029 14.0 0.0 1.7 1 1 0 2 2 2 1 Protein of unknown function DUF86 RuBisCO_small PF00101.15 gi|345007214|ref|YP_004810066.1| - 0.029 14.1 0.0 0.85 9.4 0.0 2.2 1 1 1 2 2 2 0 Ribulose bisphosphate carboxylase, small chain HTH_5 PF01022.15 gi|345007214|ref|YP_004810066.1| - 0.031 13.9 0.0 0.067 12.8 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family Phage_X PF05155.10 gi|345007214|ref|YP_004810066.1| - 0.042 13.7 0.0 0.38 10.7 0.0 2.2 1 1 1 2 2 2 0 Phage X family HTH_24 PF13412.1 gi|345007214|ref|YP_004810066.1| - 0.048 13.0 0.0 0.1 11.9 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Stk19 PF10494.4 gi|345007214|ref|YP_004810066.1| - 0.058 12.7 0.1 0.067 12.5 0.0 1.1 1 0 0 1 1 1 0 Serine-threonine protein kinase 19 YjcQ PF09639.5 gi|345007214|ref|YP_004810066.1| - 0.095 12.8 0.0 0.18 11.8 0.0 1.4 1 1 0 1 1 1 0 YjcQ protein MarR_2 PF12802.2 gi|345007214|ref|YP_004810066.1| - 0.11 12.2 0.0 0.2 11.3 0.0 1.5 1 1 0 1 1 1 0 MarR family HTH_22 PF13309.1 gi|345007214|ref|YP_004810066.1| - 0.14 11.9 0.5 2.8 7.7 0.0 2.3 2 0 0 2 2 2 0 HTH domain HTH_36 PF13730.1 gi|345007214|ref|YP_004810066.1| - 0.15 12.2 0.0 0.25 11.4 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain SWIM PF04434.12 gi|345007216|ref|YP_004810068.1| - 0.012 15.0 0.0 0.034 13.6 0.0 1.8 1 0 0 1 1 1 0 SWIM zinc finger DUF955 PF06114.8 gi|345007217|ref|YP_004810069.1| - 0.00046 19.8 0.0 0.00077 19.1 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF955) SprT-like PF10263.4 gi|345007217|ref|YP_004810069.1| - 0.0026 17.4 0.3 0.06 13.0 0.0 2.2 2 0 0 2 2 2 1 SprT-like family Peptidase_MA_2 PF13485.1 gi|345007217|ref|YP_004810069.1| - 0.018 15.0 0.1 0.045 13.7 0.0 1.7 2 0 0 2 2 2 0 Peptidase MA superfamily Peptidase_M10 PF00413.19 gi|345007217|ref|YP_004810069.1| - 0.045 13.4 0.1 0.15 11.7 0.1 2.0 1 1 0 1 1 1 0 Matrixin DUF2268 PF10026.4 gi|345007217|ref|YP_004810069.1| - 0.059 12.7 0.0 0.12 11.7 0.0 1.4 1 0 0 1 1 1 0 Predicted Zn-dependent protease (DUF2268) WXG100 PF06013.7 gi|345007217|ref|YP_004810069.1| - 0.27 11.2 2.8 2.5 8.1 0.0 3.0 4 0 0 4 4 4 0 Proteins of 100 residues with WXG DZR PF12773.2 gi|345007218|ref|YP_004810070.1| - 4.8e-05 23.0 2.0 6.9e-05 22.5 1.2 1.4 1 1 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|345007218|ref|YP_004810070.1| - 0.00063 18.8 1.4 0.0011 18.1 1.0 1.4 1 0 0 1 1 1 1 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|345007218|ref|YP_004810070.1| - 0.0022 17.7 1.8 0.38 10.5 0.0 2.3 2 0 0 2 2 2 2 Transposase zinc-ribbon domain HypA PF01155.14 gi|345007218|ref|YP_004810070.1| - 0.0075 15.9 2.0 0.0075 15.9 1.4 1.3 1 1 0 1 1 1 1 Hydrogenase expression/synthesis hypA family zinc_ribbon_2 PF13240.1 gi|345007218|ref|YP_004810070.1| - 0.0076 15.7 2.4 0.017 14.6 1.7 1.6 1 1 0 1 1 1 1 zinc-ribbon domain DUF35_N PF12172.3 gi|345007218|ref|YP_004810070.1| - 0.0091 15.8 2.4 0.014 15.2 1.7 1.3 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) DUF1272 PF06906.6 gi|345007218|ref|YP_004810070.1| - 0.026 14.3 3.2 0.026 14.3 2.2 1.5 2 0 0 2 2 1 0 Protein of unknown function (DUF1272) UPF0547 PF10571.4 gi|345007218|ref|YP_004810070.1| - 0.028 14.1 4.3 0.18 11.5 3.0 2.2 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 Zn-ribbon_8 PF09723.5 gi|345007218|ref|YP_004810070.1| - 0.054 13.4 6.9 1.3 9.0 4.0 2.6 2 1 0 2 2 2 0 Zinc ribbon domain RNA_POL_M_15KD PF02150.11 gi|345007218|ref|YP_004810070.1| - 0.058 13.0 3.3 0.25 11.0 0.0 2.6 3 0 0 3 3 3 0 RNA polymerases M/15 Kd subunit zf-P11 PF03854.9 gi|345007218|ref|YP_004810070.1| - 0.06 12.8 0.1 0.11 11.9 0.1 1.4 1 0 0 1 1 1 0 P-11 zinc finger NRDD PF13597.1 gi|345007218|ref|YP_004810070.1| - 0.14 10.1 1.9 0.14 10.2 1.3 1.1 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase OrfB_Zn_ribbon PF07282.6 gi|345007218|ref|YP_004810070.1| - 0.15 11.7 2.1 0.61 9.7 0.1 2.1 1 1 1 2 2 2 0 Putative transposase DNA-binding domain TFIIS_C PF01096.13 gi|345007218|ref|YP_004810070.1| - 0.19 11.3 4.9 5.3 6.7 0.5 2.3 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) NOB1_Zn_bind PF08772.6 gi|345007218|ref|YP_004810070.1| - 0.21 11.4 2.0 0.31 10.9 1.4 1.3 1 0 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like Prok-RING_1 PF14446.1 gi|345007218|ref|YP_004810070.1| - 0.25 11.1 3.8 0.16 11.7 1.6 1.5 2 0 0 2 2 1 0 Prokaryotic RING finger family 1 Prim_Zn_Ribbon PF08273.7 gi|345007218|ref|YP_004810070.1| - 0.34 11.0 5.6 1.5 8.9 1.0 2.3 1 1 1 2 2 2 0 Zinc-binding domain of primase-helicase zf-FPG_IleRS PF06827.9 gi|345007218|ref|YP_004810070.1| - 0.36 10.5 4.0 7.5 6.3 0.2 2.3 1 1 1 2 2 2 0 Zinc finger found in FPG and IleRS zf-RING_3 PF14369.1 gi|345007218|ref|YP_004810070.1| - 1.7 8.7 5.5 3.5 7.6 2.7 2.2 1 1 1 2 2 2 0 zinc-finger Lar_restr_allev PF14354.1 gi|345007218|ref|YP_004810070.1| - 1.7 8.9 5.1 5.4 7.4 0.6 2.2 1 1 1 2 2 2 0 Restriction alleviation protein Lar zf-tcix PF14952.1 gi|345007218|ref|YP_004810070.1| - 1.9 7.8 4.3 29 4.1 0.2 3.0 3 0 0 3 3 3 0 Putative treble-clef, zinc-finger, Zn-binding Nudix_N_2 PF14803.1 gi|345007218|ref|YP_004810070.1| - 5.9 6.6 6.9 39 4.0 0.7 2.7 2 1 1 3 3 3 0 Nudix N-terminal HMA PF00403.21 gi|345007222|ref|YP_004810074.1| - 1.5e-13 50.6 0.4 1.7e-13 50.5 0.2 1.0 1 0 0 1 1 1 1 Heavy-metal-associated domain HBS1_N PF08938.5 gi|345007222|ref|YP_004810074.1| - 0.087 12.9 0.1 0.1 12.7 0.0 1.1 1 0 0 1 1 1 0 HBS1 N-terminus ROS_MUCR PF05443.6 gi|345007222|ref|YP_004810074.1| - 0.09 12.5 0.0 0.1 12.3 0.0 1.0 1 0 0 1 1 1 0 ROS/MUCR transcriptional regulator protein Thioredoxin_3 PF13192.1 gi|345007222|ref|YP_004810074.1| - 0.12 12.1 0.1 0.18 11.6 0.1 1.4 1 1 0 1 1 1 0 Thioredoxin domain E1-E2_ATPase PF00122.15 gi|345007223|ref|YP_004810075.1| - 1.1e-49 168.6 0.3 2.9e-49 167.1 0.0 1.9 2 0 0 2 2 2 1 E1-E2 ATPase Hydrolase PF00702.21 gi|345007223|ref|YP_004810075.1| - 7.8e-46 157.1 4.9 1.5e-45 156.2 3.4 1.5 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|345007223|ref|YP_004810075.1| - 3.2e-14 53.5 0.0 1.2e-13 51.6 0.0 2.0 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HMA PF00403.21 gi|345007223|ref|YP_004810075.1| - 1.1e-08 35.0 0.0 2.4e-08 33.9 0.0 1.6 1 0 0 1 1 1 1 Heavy-metal-associated domain Hydrolase_3 PF08282.7 gi|345007223|ref|YP_004810075.1| - 3.1e-06 26.9 1.2 0.00056 19.5 0.3 2.3 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.1 gi|345007223|ref|YP_004810075.1| - 0.071 13.0 0.0 0.22 11.4 0.0 1.8 1 0 0 1 1 1 0 Haloacid dehalogenase-like hydrolase HTH_20 PF12840.2 gi|345007224|ref|YP_004810076.1| - 7.3e-11 41.7 1.6 7.7e-11 41.6 0.1 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|345007224|ref|YP_004810076.1| - 9.8e-07 28.3 0.1 4.1e-06 26.3 0.1 2.0 1 1 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_12 PF08461.5 gi|345007224|ref|YP_004810076.1| - 0.00018 21.1 0.5 0.0004 20.0 0.2 1.8 2 0 0 2 2 2 1 Ribonuclease R winged-helix domain TFIIE_alpha PF02002.12 gi|345007224|ref|YP_004810076.1| - 0.00018 20.9 0.8 0.0076 15.7 0.1 2.3 1 1 0 2 2 2 1 TFIIE alpha subunit FUR PF01475.14 gi|345007224|ref|YP_004810076.1| - 0.0016 18.3 0.1 0.0031 17.4 0.1 1.4 1 0 0 1 1 1 1 Ferric uptake regulator family Nop16 PF09420.5 gi|345007224|ref|YP_004810076.1| - 0.0022 18.0 0.4 0.0032 17.5 0.3 1.3 1 1 0 1 1 1 1 Ribosome biogenesis protein Nop16 PadR PF03551.9 gi|345007224|ref|YP_004810076.1| - 0.0032 17.2 0.3 0.0067 16.1 0.1 1.7 2 0 0 2 2 2 1 Transcriptional regulator PadR-like family TrmB PF01978.14 gi|345007224|ref|YP_004810076.1| - 0.013 15.1 0.0 0.035 13.8 0.0 1.8 1 1 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB PqqD PF05402.7 gi|345007224|ref|YP_004810076.1| - 0.031 14.2 3.4 0.098 12.6 0.1 2.7 3 0 0 3 3 3 0 Coenzyme PQQ synthesis protein D (PqqD) Transpep_BrtH PF14399.1 gi|345007224|ref|YP_004810076.1| - 0.033 13.4 0.0 0.04 13.2 0.0 1.1 1 0 0 1 1 1 0 NlpC/p60-like transpeptidase Penicillinase_R PF03965.11 gi|345007224|ref|YP_004810076.1| - 0.041 13.9 0.6 0.093 12.8 0.3 1.9 1 1 0 1 1 1 0 Penicillinase repressor HGD-D PF06050.8 gi|345007224|ref|YP_004810076.1| - 0.052 12.3 0.0 0.075 11.8 0.0 1.2 1 0 0 1 1 1 0 2-hydroxyglutaryl-CoA dehydratase, D-component SBP_bac_3 PF00497.15 gi|345007224|ref|YP_004810076.1| - 0.13 11.4 0.1 0.26 10.5 0.0 1.6 2 0 0 2 2 2 0 Bacterial extracellular solute-binding proteins, family 3 ArsR PF09824.4 gi|345007224|ref|YP_004810076.1| - 0.13 11.5 0.0 0.19 11.0 0.0 1.3 1 0 0 1 1 1 0 ArsR transcriptional regulator Pyr_redox_2 PF07992.9 gi|345007225|ref|YP_004810077.1| - 1.2e-34 119.9 1.4 4.6e-34 118.0 1.0 2.5 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.17 gi|345007225|ref|YP_004810077.1| - 2.4e-30 104.7 1.5 3.8e-30 104.1 0.4 1.8 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox PF00070.22 gi|345007225|ref|YP_004810077.1| - 6.7e-16 58.4 0.5 6.7e-16 58.4 0.3 2.4 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|345007225|ref|YP_004810077.1| - 5.6e-09 36.3 0.3 7.7e-06 26.1 0.0 2.3 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.2 gi|345007225|ref|YP_004810077.1| - 8.5e-05 21.7 1.0 8.5e-05 21.7 0.7 2.0 2 0 0 2 2 2 1 FAD dependent oxidoreductase GIDA PF01134.17 gi|345007225|ref|YP_004810077.1| - 0.0031 16.4 4.8 0.012 14.4 3.2 2.2 2 1 0 2 2 2 1 Glucose inhibited division protein A FAD_binding_2 PF00890.19 gi|345007225|ref|YP_004810077.1| - 0.0051 15.7 0.2 0.0051 15.7 0.1 2.1 2 1 0 3 3 3 1 FAD binding domain NAD_binding_8 PF13450.1 gi|345007225|ref|YP_004810077.1| - 0.02 14.9 3.5 2.4 8.2 0.3 2.6 2 0 0 2 2 2 0 NAD(P)-binding Rossmann-like domain DAO PF01266.19 gi|345007225|ref|YP_004810077.1| - 0.21 10.4 7.6 0.94 8.3 0.0 2.9 3 0 0 3 3 3 0 FAD dependent oxidoreductase HxlR PF01638.12 gi|345007226|ref|YP_004810078.1| - 6.5e-15 54.5 0.0 7.5e-15 54.3 0.0 1.1 1 0 0 1 1 1 1 HxlR-like helix-turn-helix MarR PF01047.17 gi|345007226|ref|YP_004810078.1| - 8e-05 22.2 0.1 0.00016 21.2 0.0 1.5 2 0 0 2 2 2 1 MarR family Peptidase_M2 PF01401.13 gi|345007226|ref|YP_004810078.1| - 0.00023 19.5 0.0 0.00026 19.3 0.0 1.0 1 0 0 1 1 1 1 Angiotensin-converting enzyme MarR_2 PF12802.2 gi|345007226|ref|YP_004810078.1| - 0.0003 20.3 0.0 0.00048 19.7 0.0 1.3 1 0 0 1 1 1 1 MarR family PadR PF03551.9 gi|345007226|ref|YP_004810078.1| - 0.00073 19.2 0.0 0.0011 18.7 0.0 1.2 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_20 PF12840.2 gi|345007226|ref|YP_004810078.1| - 0.0027 17.4 0.0 0.0042 16.8 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain FUR PF01475.14 gi|345007226|ref|YP_004810078.1| - 0.02 14.8 0.0 0.022 14.6 0.0 1.2 1 0 0 1 1 1 0 Ferric uptake regulator family HTH_34 PF13601.1 gi|345007226|ref|YP_004810078.1| - 0.022 14.7 0.0 0.032 14.2 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain DUF3385 PF11865.3 gi|345007226|ref|YP_004810078.1| - 0.039 13.8 0.0 0.048 13.5 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3385) HTH_27 PF13463.1 gi|345007226|ref|YP_004810078.1| - 0.05 13.9 0.0 0.074 13.3 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain EamA PF00892.15 gi|345007227|ref|YP_004810079.1| - 0.12 12.3 3.3 0.19 11.8 0.6 2.2 1 1 1 2 2 2 0 EamA-like transporter family RseC_MucC PF04246.7 gi|345007227|ref|YP_004810079.1| - 0.31 10.6 2.8 0.46 10.0 2.0 1.5 1 1 0 1 1 1 0 Positive regulator of sigma(E), RseC/MucC DUF4190 PF13828.1 gi|345007227|ref|YP_004810079.1| - 0.76 9.3 6.1 2.7 7.6 1.9 2.4 1 1 1 2 2 2 0 Domain of unknown function (DUF4190) UbiA PF01040.13 gi|345007229|ref|YP_004810081.1| - 2.5e-31 108.8 26.0 2.5e-31 108.8 18.0 2.7 2 1 0 2 2 2 1 UbiA prenyltransferase family COX15-CtaA PF02628.10 gi|345007229|ref|YP_004810081.1| - 2.5e-20 72.5 14.4 2.5e-20 72.5 10.0 2.8 2 1 0 2 2 2 1 Cytochrome oxidase assembly protein COX3 PF00510.13 gi|345007230|ref|YP_004810082.1| - 5.7e-20 71.8 8.5 8.7e-20 71.2 5.9 1.3 1 1 0 1 1 1 1 Cytochrome c oxidase subunit III Cyt_c_ox_IV PF12270.3 gi|345007230|ref|YP_004810082.1| - 4e-05 23.3 0.2 4e-05 23.3 0.2 3.0 4 0 0 4 4 4 1 Cytochrome c oxidase subunit IV Tetraspannin PF00335.15 gi|345007230|ref|YP_004810082.1| - 7 5.8 15.6 7.7 5.7 0.7 3.0 2 1 0 2 2 2 0 Tetraspanin family COX2 PF00116.15 gi|345007231|ref|YP_004810083.1| - 5.3e-16 58.5 2.4 2.8e-14 53.0 0.6 2.5 2 1 0 2 2 2 1 Cytochrome C oxidase subunit II, periplasmic domain DUF4430 PF14478.1 gi|345007231|ref|YP_004810083.1| - 0.11 12.5 0.2 4.9 7.2 0.0 2.5 2 1 0 2 2 2 0 Domain of unknown function (DUF4430) COX1 PF00115.15 gi|345007232|ref|YP_004810084.1| - 6.6e-111 371.0 63.6 8.1e-111 370.7 44.1 1.1 1 0 0 1 1 1 1 Cytochrome C and Quinol oxidase polypeptide I TAT_signal PF10518.4 gi|345007233|ref|YP_004810085.1| - 0.014 15.3 0.2 0.014 15.3 0.1 1.9 2 0 0 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence Copper-bind PF00127.15 gi|345007233|ref|YP_004810085.1| - 0.018 15.2 0.0 0.043 14.0 0.0 1.7 2 0 0 2 2 2 0 Copper binding proteins, plastocyanin/azurin family DDE_Tnp_1 PF01609.16 gi|345007234|ref|YP_004810086.1| - 3.1e-30 105.3 0.5 4e-30 104.9 0.4 1.1 1 0 0 1 1 1 1 Transposase DDE domain AAA_22 PF13401.1 gi|345007235|ref|YP_004810087.1| - 7e-08 32.6 0.0 1.8e-07 31.3 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|345007235|ref|YP_004810087.1| - 1.5e-06 28.3 0.0 9.5e-05 22.4 0.0 2.6 2 1 0 2 2 2 1 AAA ATPase domain Bac_DnaA PF00308.13 gi|345007235|ref|YP_004810087.1| - 3.3e-05 23.6 0.3 0.003 17.2 0.1 2.6 1 1 1 2 2 2 1 Bacterial dnaA protein Arch_ATPase PF01637.13 gi|345007235|ref|YP_004810087.1| - 0.00011 22.0 0.0 0.0017 18.0 0.0 2.4 2 1 0 2 2 2 1 Archaeal ATPase AAA PF00004.24 gi|345007235|ref|YP_004810087.1| - 0.00022 21.4 0.0 0.0012 19.0 0.0 2.3 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_14 PF13173.1 gi|345007235|ref|YP_004810087.1| - 0.0012 18.6 0.0 0.003 17.4 0.0 1.6 1 1 0 1 1 1 1 AAA domain NB-ARC PF00931.17 gi|345007235|ref|YP_004810087.1| - 0.0044 15.9 0.0 0.0076 15.1 0.0 1.3 1 0 0 1 1 1 1 NB-ARC domain Cdc6_C PF09079.6 gi|345007235|ref|YP_004810087.1| - 0.012 15.3 0.2 0.026 14.2 0.1 1.6 1 0 0 1 1 1 0 CDC6, C terminal RuvB_N PF05496.7 gi|345007235|ref|YP_004810087.1| - 0.012 14.6 0.0 2 7.3 0.0 2.2 2 0 0 2 2 2 0 Holliday junction DNA helicase ruvB N-terminus AAA_5 PF07728.9 gi|345007235|ref|YP_004810087.1| - 0.027 14.1 0.0 0.19 11.4 0.0 2.3 2 1 0 2 2 2 0 AAA domain (dynein-related subfamily) PhoH PF02562.11 gi|345007235|ref|YP_004810087.1| - 0.032 13.4 0.0 7.6 5.6 0.0 2.5 2 0 0 2 2 2 0 PhoH-like protein DEAD PF00270.24 gi|345007235|ref|YP_004810087.1| - 0.032 13.7 0.0 2.3 7.6 0.0 2.3 2 0 0 2 2 2 0 DEAD/DEAH box helicase RNA_helicase PF00910.17 gi|345007235|ref|YP_004810087.1| - 0.074 13.2 0.0 0.75 9.9 0.0 2.6 2 1 0 2 2 2 0 RNA helicase AAA_17 PF13207.1 gi|345007235|ref|YP_004810087.1| - 0.12 13.2 0.4 0.76 10.6 0.3 2.3 1 1 0 1 1 1 0 AAA domain NACHT PF05729.7 gi|345007235|ref|YP_004810087.1| - 0.14 11.8 0.0 0.29 10.7 0.0 1.6 1 0 0 1 1 1 0 NACHT domain RAG1 PF12940.2 gi|345007236|ref|YP_004810088.1| - 0.078 11.3 0.2 0.08 11.2 0.2 1.1 1 0 0 1 1 1 0 Recombination-activation protein 1 (RAG1) RPAP3_C PF13877.1 gi|345007236|ref|YP_004810088.1| - 0.13 12.2 0.0 0.84 9.6 0.0 2.2 2 1 0 2 2 2 0 Potential Monad-binding region of RPAP3 IKKbetaNEMObind PF12179.3 gi|345007236|ref|YP_004810088.1| - 0.23 11.2 1.3 0.34 10.7 0.2 1.8 2 0 0 2 2 2 0 I-kappa-kinase-beta NEMO binding domain MarR_2 PF12802.2 gi|345007237|ref|YP_004810089.1| - 2.5e-08 33.4 0.0 3.9e-08 32.8 0.0 1.3 1 0 0 1 1 1 1 MarR family MarR PF01047.17 gi|345007237|ref|YP_004810089.1| - 0.0058 16.3 0.0 0.011 15.4 0.0 1.4 1 0 0 1 1 1 1 MarR family RPA_C PF08784.6 gi|345007237|ref|YP_004810089.1| - 0.01 16.2 0.0 0.015 15.7 0.0 1.3 1 0 0 1 1 1 0 Replication protein A C terminal HTH_24 PF13412.1 gi|345007237|ref|YP_004810089.1| - 0.015 14.6 0.0 0.073 12.4 0.0 2.0 1 1 0 1 1 1 0 Winged helix-turn-helix DNA-binding DUF484 PF04340.7 gi|345007237|ref|YP_004810089.1| - 0.026 14.0 0.0 0.052 13.0 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF484 DUF2250 PF10007.4 gi|345007237|ref|YP_004810089.1| - 0.047 13.5 0.0 0.12 12.3 0.0 1.6 1 1 1 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) PDDEXK_1 PF12705.2 gi|345007238|ref|YP_004810090.1| - 7.2e-12 45.2 0.0 9.1e-12 44.8 0.0 1.2 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily Cas_Cas4 PF01930.12 gi|345007238|ref|YP_004810090.1| - 2e-08 34.3 0.0 3.2e-08 33.6 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function DUF83 DUF1703 PF08011.6 gi|345007238|ref|YP_004810090.1| - 0.017 14.8 0.0 0.032 13.9 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1703) zf-RanBP PF00641.13 gi|345007238|ref|YP_004810090.1| - 2.1 7.5 5.3 6.1 6.0 0.3 2.8 2 0 0 2 2 2 0 Zn-finger in Ran binding protein and others DUF4611 PF15387.1 gi|345007239|ref|YP_004810091.1| - 0.042 13.9 0.4 0.042 13.9 0.3 2.8 1 1 2 3 3 3 0 Domain of unknown function (DUF4611) HxlR PF01638.12 gi|345007239|ref|YP_004810091.1| - 0.052 13.1 0.0 0.083 12.5 0.0 1.4 1 0 0 1 1 1 0 HxlR-like helix-turn-helix DDE_Tnp_1 PF01609.16 gi|345007240|ref|YP_004810092.1| - 4.4e-06 26.4 0.6 9.5e-06 25.3 0.4 1.5 1 1 0 1 1 1 1 Transposase DDE domain DUF772 PF05598.6 gi|345007240|ref|YP_004810092.1| - 0.00017 21.4 0.0 0.0005 19.9 0.0 1.9 1 0 0 1 1 1 1 Transposase domain (DUF772) AAA_21 PF13304.1 gi|345007241|ref|YP_004810093.1| - 7.9e-12 45.7 5.0 0.00011 22.2 0.1 4.0 4 0 0 4 4 4 2 AAA domain SMC_N PF02463.14 gi|345007241|ref|YP_004810093.1| - 2.8e-07 29.9 6.4 0.0045 16.2 0.0 2.4 2 1 0 2 2 2 2 RecF/RecN/SMC N terminal domain ABC_tran PF00005.22 gi|345007241|ref|YP_004810093.1| - 4.3e-07 30.2 0.2 0.084 13.1 0.0 3.8 3 0 0 3 3 3 2 ABC transporter AAA_13 PF13166.1 gi|345007241|ref|YP_004810093.1| - 1.1e-05 24.1 8.2 0.017 13.6 0.0 4.5 4 1 1 5 5 5 2 AAA domain AAA_29 PF13555.1 gi|345007241|ref|YP_004810093.1| - 3.4e-05 23.2 0.0 6.9e-05 22.2 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.1 gi|345007241|ref|YP_004810093.1| - 0.00022 20.3 0.0 0.029 13.4 0.0 2.3 2 0 0 2 2 2 1 AAA ATPase domain AAA_23 PF13476.1 gi|345007241|ref|YP_004810093.1| - 0.00024 21.4 28.7 0.01 16.2 16.9 4.3 2 1 0 2 2 2 1 AAA domain Baculo_PEP_C PF04513.7 gi|345007241|ref|YP_004810093.1| - 0.0014 18.4 3.1 0.32 10.8 0.0 4.0 4 0 0 4 4 4 1 Baculovirus polyhedron envelope protein, PEP, C terminus SbcCD_C PF13558.1 gi|345007241|ref|YP_004810093.1| - 0.0022 17.8 0.0 0.0065 16.3 0.0 1.8 1 0 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_25 PF13481.1 gi|345007241|ref|YP_004810093.1| - 0.0033 16.8 0.9 0.25 10.7 0.0 3.3 2 1 1 3 3 3 1 AAA domain AAA_22 PF13401.1 gi|345007241|ref|YP_004810093.1| - 0.0087 16.1 0.0 0.1 12.7 0.0 2.9 2 0 0 2 2 2 1 AAA domain AAA_11 PF13086.1 gi|345007241|ref|YP_004810093.1| - 0.032 13.8 5.9 1.7 8.1 0.1 3.8 3 1 0 3 3 3 0 AAA domain UPF0079 PF02367.12 gi|345007241|ref|YP_004810093.1| - 0.032 13.8 0.1 0.24 11.0 0.0 2.2 2 0 0 2 2 2 0 Uncharacterised P-loop hydrolase UPF0079 AAA PF00004.24 gi|345007241|ref|YP_004810093.1| - 0.041 14.0 0.5 0.27 11.4 0.3 2.5 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) IncA PF04156.9 gi|345007241|ref|YP_004810093.1| - 0.15 11.6 37.6 0.78 9.3 2.4 5.4 4 1 0 4 4 4 0 IncA protein STAT_alpha PF01017.15 gi|345007241|ref|YP_004810093.1| - 0.22 11.2 4.8 1.5 8.5 0.4 3.3 3 1 0 3 3 3 0 STAT protein, all-alpha domain Prefoldin_2 PF01920.15 gi|345007241|ref|YP_004810093.1| - 0.33 10.7 20.5 1.1 9.0 1.8 5.3 5 1 0 5 5 5 0 Prefoldin subunit ApoLp-III PF07464.6 gi|345007241|ref|YP_004810093.1| - 2.6 8.0 18.2 1.5 8.8 1.0 4.6 4 1 1 5 5 5 0 Apolipophorin-III precursor (apoLp-III) Cauli_AT PF03233.8 gi|345007241|ref|YP_004810093.1| - 9.9 5.8 12.2 10 5.7 0.2 4.3 4 1 0 4 4 4 0 Aphid transmission protein DUF1703 PF08011.6 gi|345007245|ref|YP_004810097.1| - 0.015 15.0 0.0 0.033 13.9 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1703) UPF0102 PF02021.12 gi|345007245|ref|YP_004810097.1| - 0.027 14.3 0.0 0.073 12.9 0.0 1.6 1 0 0 1 1 1 0 Uncharacterised protein family UPF0102 DUF1052 PF06319.7 gi|345007245|ref|YP_004810097.1| - 0.059 12.6 0.0 0.12 11.5 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1052) Asparaginase_2 PF01112.13 gi|345007245|ref|YP_004810097.1| - 0.17 10.5 0.0 9.5 4.8 0.0 2.2 2 0 0 2 2 2 0 Asparaginase HATPase_c_3 PF13589.1 gi|345007246|ref|YP_004810098.1| - 6.5e-07 29.0 0.0 1.8e-06 27.6 0.0 1.8 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HNH PF01844.18 gi|345007250|ref|YP_004810102.1| - 3.7e-11 42.7 7.7 7.3e-11 41.7 5.3 1.5 1 0 0 1 1 1 1 HNH endonuclease zf-C4pol PF14260.1 gi|345007250|ref|YP_004810102.1| - 0.16 11.9 1.2 0.4 10.7 0.8 1.6 1 1 0 1 1 1 0 C4-type zinc-finger of DNA polymerase delta DDE_Tnp_1 PF01609.16 gi|345007251|ref|YP_004810103.1| - 3.1e-30 105.3 0.5 4e-30 104.9 0.4 1.1 1 0 0 1 1 1 1 Transposase DDE domain CENP-B_dimeris PF09026.5 gi|345007252|ref|YP_004810104.1| - 0.043 14.0 0.1 0.1 12.8 0.1 1.6 1 0 0 1 1 1 0 Centromere protein B dimerisation domain DUF11 PF01345.13 gi|345007252|ref|YP_004810104.1| - 0.29 11.1 7.7 0.13 12.3 2.8 2.4 2 1 0 2 2 2 0 Domain of unknown function DUF11 CARDB PF07705.6 gi|345007252|ref|YP_004810104.1| - 0.94 9.5 14.3 2.8 8.0 6.6 2.9 1 1 1 2 2 2 0 CARDB Cadherin-like PF12733.2 gi|345007252|ref|YP_004810104.1| - 5.5 7.3 12.1 0.38 11.0 1.0 2.4 1 1 1 2 2 2 0 Cadherin-like beta sandwich domain DUF2207 PF09972.4 gi|345007253|ref|YP_004810105.1| - 0.00085 18.0 0.3 0.00095 17.8 0.2 1.0 1 0 0 1 1 1 1 Predicted membrane protein (DUF2207) BatA PF07584.6 gi|345007253|ref|YP_004810105.1| - 0.036 14.2 0.0 0.66 10.2 0.0 2.0 2 0 0 2 2 2 0 Aerotolerance regulator N-terminal DUF3043 PF11241.3 gi|345007253|ref|YP_004810105.1| - 0.04 13.5 1.1 0.048 13.2 0.7 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3043) Bacteriocin_IIc PF10439.4 gi|345007254|ref|YP_004810106.1| - 9.2 6.4 9.3 1.3 9.1 2.5 2.2 2 0 0 2 2 2 0 Bacteriocin class II with double-glycine leader peptide Adenylate_cycl PF01295.13 gi|345007255|ref|YP_004810107.1| - 0.006 14.9 0.3 0.006 14.9 0.2 1.0 1 0 0 1 1 1 1 Adenylate cyclase, class-I Plasmid_stabil PF05016.9 gi|345007256|ref|YP_004810108.1| - 0.037 14.4 0.4 0.078 13.3 0.3 1.5 1 1 0 1 1 1 0 Plasmid stabilisation system protein RHH_1 PF01402.16 gi|345007257|ref|YP_004810109.1| - 0.011 15.6 0.1 0.026 14.3 0.0 1.7 2 0 0 2 2 2 0 Ribbon-helix-helix protein, copG family SHOCT PF09851.4 gi|345007259|ref|YP_004810111.1| - 0.061 12.8 0.2 0.061 12.8 0.1 2.5 3 1 1 4 4 4 0 Short C-terminal domain DUF789 PF05623.7 gi|345007260|ref|YP_004810112.1| - 0.14 11.5 1.0 0.18 11.2 0.7 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF789) Daxx PF03344.10 gi|345007260|ref|YP_004810112.1| - 5.6 5.3 11.9 5.2 5.4 8.2 1.1 1 0 0 1 1 1 0 Daxx Family Nop14 PF04147.7 gi|345007260|ref|YP_004810112.1| - 7.2 4.3 12.0 8 4.2 8.3 1.1 1 0 0 1 1 1 0 Nop14-like family CbiA PF01656.18 gi|345007261|ref|YP_004810113.1| - 1e-25 90.3 0.0 1.4e-25 89.8 0.0 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain MipZ PF09140.6 gi|345007261|ref|YP_004810113.1| - 8.2e-09 34.9 0.0 0.00077 18.6 0.1 3.1 3 0 0 3 3 3 2 ATPase MipZ AAA_31 PF13614.1 gi|345007261|ref|YP_004810113.1| - 1.2e-08 35.0 0.0 1.3e-07 31.7 0.0 2.1 1 1 0 1 1 1 1 AAA domain YhjQ PF06564.7 gi|345007261|ref|YP_004810113.1| - 3e-05 23.4 0.0 4.3e-05 22.9 0.0 1.1 1 0 0 1 1 1 1 YhjQ protein ArsA_ATPase PF02374.10 gi|345007261|ref|YP_004810113.1| - 0.00016 20.8 0.1 0.0015 17.6 0.1 2.1 2 0 0 2 2 2 1 Anion-transporting ATPase AAA_17 PF13207.1 gi|345007261|ref|YP_004810113.1| - 0.0011 19.7 0.6 0.0026 18.5 0.4 1.7 1 1 0 1 1 1 1 AAA domain VirC1 PF07015.6 gi|345007261|ref|YP_004810113.1| - 0.0022 17.1 0.0 0.65 9.0 0.0 2.2 2 0 0 2 2 2 2 VirC1 protein Fer4_NifH PF00142.13 gi|345007261|ref|YP_004810113.1| - 0.0069 15.6 0.0 0.34 10.0 0.0 2.3 2 0 0 2 2 2 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family APS_kinase PF01583.15 gi|345007261|ref|YP_004810113.1| - 0.0069 16.0 0.1 0.015 15.0 0.1 1.4 1 0 0 1 1 1 1 Adenylylsulphate kinase AAA_25 PF13481.1 gi|345007261|ref|YP_004810113.1| - 0.017 14.5 0.2 0.047 13.0 0.2 1.8 1 1 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|345007261|ref|YP_004810113.1| - 0.021 14.2 0.1 0.1 11.9 0.0 1.9 2 1 0 2 2 2 0 AAA-like domain SRP54 PF00448.17 gi|345007261|ref|YP_004810113.1| - 0.097 12.0 0.5 3.8 6.9 0.0 2.4 3 0 0 3 3 3 0 SRP54-type protein, GTPase domain AAA_18 PF13238.1 gi|345007261|ref|YP_004810113.1| - 0.12 12.7 0.2 0.35 11.1 0.1 1.9 1 1 0 1 1 1 0 AAA domain HTH_23 PF13384.1 gi|345007262|ref|YP_004810114.1| - 3.7e-05 23.2 0.1 0.0002 20.8 0.0 2.3 1 1 1 2 2 2 1 Homeodomain-like domain HTH_28 PF13518.1 gi|345007262|ref|YP_004810114.1| - 0.00066 19.6 0.1 0.0034 17.3 0.0 2.2 1 1 1 2 2 2 1 Helix-turn-helix domain Fe_dep_repress PF01325.14 gi|345007262|ref|YP_004810114.1| - 0.00073 19.4 0.0 0.0055 16.6 0.0 2.2 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain MarR_2 PF12802.2 gi|345007262|ref|YP_004810114.1| - 0.00082 18.9 0.1 0.0023 17.5 0.0 1.8 1 1 1 2 2 2 1 MarR family TrmB PF01978.14 gi|345007262|ref|YP_004810114.1| - 0.0016 18.0 0.0 0.0033 17.0 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_1 PF00126.22 gi|345007262|ref|YP_004810114.1| - 0.0017 18.0 0.4 0.0048 16.5 0.0 1.8 2 0 0 2 2 2 1 Bacterial regulatory helix-turn-helix protein, lysR family HTH_24 PF13412.1 gi|345007262|ref|YP_004810114.1| - 0.0031 16.8 0.0 0.0058 16.0 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Rrf2 PF02082.15 gi|345007262|ref|YP_004810114.1| - 0.0033 17.5 0.0 0.044 13.9 0.0 2.3 2 0 0 2 2 2 1 Transcriptional regulator GntR PF00392.16 gi|345007262|ref|YP_004810114.1| - 0.0036 16.6 0.1 0.014 14.8 0.0 1.9 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family RPA_C PF08784.6 gi|345007262|ref|YP_004810114.1| - 0.011 16.0 0.0 0.021 15.2 0.0 1.5 1 0 0 1 1 1 0 Replication protein A C terminal DUF2250 PF10007.4 gi|345007262|ref|YP_004810114.1| - 0.012 15.5 0.0 0.02 14.8 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_30 PF13556.1 gi|345007262|ref|YP_004810114.1| - 0.031 13.8 0.1 0.063 12.8 0.0 1.6 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain HTH_29 PF13551.1 gi|345007262|ref|YP_004810114.1| - 0.048 13.8 0.0 0.11 12.6 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn helix DUF883 PF05957.8 gi|345007262|ref|YP_004810114.1| - 0.079 13.3 0.9 0.13 12.6 0.6 1.3 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF883) DNA_methylase PF00145.12 gi|345007263|ref|YP_004810115.1| - 2.9e-61 207.4 0.0 4.3e-61 206.8 0.0 1.2 1 0 0 1 1 1 1 C-5 cytosine-specific DNA methylase Methyltransf_26 PF13659.1 gi|345007263|ref|YP_004810115.1| - 0.0001 22.2 0.1 0.00043 20.3 0.0 2.0 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_15 PF09445.5 gi|345007263|ref|YP_004810115.1| - 0.02 14.4 0.0 0.035 13.6 0.0 1.4 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase Helicase_C PF00271.26 gi|345007266|ref|YP_004810118.1| - 4.2e-08 32.9 0.0 8.3e-08 31.9 0.0 1.4 1 0 0 1 1 1 1 Helicase conserved C-terminal domain Nudix_N_2 PF14803.1 gi|345007266|ref|YP_004810118.1| - 0.016 14.8 1.3 0.037 13.7 0.9 1.5 1 0 0 1 1 1 0 Nudix N-terminal DEAD PF00270.24 gi|345007266|ref|YP_004810118.1| - 0.056 12.9 0.0 3.4 7.1 0.0 2.3 2 0 0 2 2 2 0 DEAD/DEAH box helicase DUF1998 PF09369.5 gi|345007267|ref|YP_004810119.1| - 0.0002 21.8 0.1 0.00059 20.3 0.0 1.9 1 0 0 1 1 1 1 Domain of unknown function (DUF1998) PLDc_2 PF13091.1 gi|345007268|ref|YP_004810120.1| - 1.4e-15 57.1 0.0 2.4e-15 56.3 0.0 1.3 1 0 0 1 1 1 1 PLD-like domain PLDc PF00614.17 gi|345007268|ref|YP_004810120.1| - 1.8e-05 24.3 0.3 5e-05 22.9 0.0 1.8 2 0 0 2 2 2 1 Phospholipase D Active site motif Eco57I PF07669.6 gi|345007269|ref|YP_004810121.1| - 2.4e-19 69.6 0.0 7.5e-19 68.0 0.0 1.8 1 0 0 1 1 1 1 Eco57I restriction-modification methylase TaqI_C PF12950.2 gi|345007269|ref|YP_004810121.1| - 3.2e-14 52.7 0.1 6.8e-14 51.6 0.1 1.5 1 0 0 1 1 1 1 TaqI-like C-terminal specificity domain N6_Mtase PF02384.11 gi|345007269|ref|YP_004810121.1| - 4.8e-10 39.0 0.0 0.00027 20.1 0.0 2.8 2 1 0 2 2 2 2 N-6 DNA Methylase Methyltransf_26 PF13659.1 gi|345007269|ref|YP_004810121.1| - 5.3e-10 39.3 0.0 6.9e-09 35.7 0.0 2.3 1 1 0 1 1 1 1 Methyltransferase domain HSDR_N_2 PF13588.1 gi|345007269|ref|YP_004810121.1| - 0.032 14.0 0.0 0.11 12.3 0.0 1.9 2 0 0 2 2 2 0 Type I restriction enzyme R protein N terminus (HSDR_N) HNH_2 PF13391.1 gi|345007270|ref|YP_004810122.1| - 2.2e-10 40.1 0.3 5.4e-10 38.9 0.2 1.7 1 0 0 1 1 1 1 HNH endonuclease HTH_20 PF12840.2 gi|345007272|ref|YP_004810124.1| - 0.00016 21.3 0.0 0.00028 20.6 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|345007272|ref|YP_004810124.1| - 0.002 17.7 0.0 0.0031 17.1 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family TrmB PF01978.14 gi|345007272|ref|YP_004810124.1| - 0.0044 16.6 0.0 0.0074 15.9 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.17 gi|345007272|ref|YP_004810124.1| - 0.031 13.9 0.0 0.068 12.8 0.0 1.6 1 0 0 1 1 1 0 MarR family HTH_24 PF13412.1 gi|345007272|ref|YP_004810124.1| - 0.13 11.6 0.3 0.3 10.4 0.0 1.8 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding SP_C-Propep PF08999.5 gi|345007274|ref|YP_004810126.1| - 0.33 10.4 1.8 0.63 9.5 1.2 1.4 1 0 0 1 1 1 0 Surfactant protein C, N terminal propeptide SNF2_N PF00176.18 gi|345007275|ref|YP_004810127.1| - 4.4e-24 84.8 0.0 3.8e-22 78.4 0.0 2.2 1 1 0 1 1 1 1 SNF2 family N-terminal domain Helicase_C PF00271.26 gi|345007275|ref|YP_004810127.1| - 5e-17 61.5 0.0 1.2e-16 60.2 0.0 1.7 1 0 0 1 1 1 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|345007275|ref|YP_004810127.1| - 6.9e-12 45.5 0.0 2.1e-11 44.0 0.0 1.9 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit RapA_C PF12137.3 gi|345007275|ref|YP_004810127.1| - 4.9e-06 25.6 3.5 1.7e-05 23.8 0.0 2.5 2 0 0 2 2 2 1 RNA polymerase recycling family C-terminal DEAD PF00270.24 gi|345007275|ref|YP_004810127.1| - 0.00017 21.0 0.0 0.00055 19.4 0.0 1.8 2 0 0 2 2 2 1 DEAD/DEAH box helicase DNA_methylase PF00145.12 gi|345007276|ref|YP_004810128.1| - 1.6e-59 201.7 0.0 1e-29 103.7 0.0 2.3 2 1 0 2 2 2 2 C-5 cytosine-specific DNA methylase MTS PF05175.9 gi|345007276|ref|YP_004810128.1| - 0.00021 20.7 0.0 0.00039 19.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_26 PF13659.1 gi|345007276|ref|YP_004810128.1| - 0.00047 20.1 0.0 0.00079 19.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.8 gi|345007276|ref|YP_004810128.1| - 0.059 12.4 0.5 0.082 12.0 0.0 1.5 2 0 0 2 2 2 0 Ribosomal protein L11 methyltransferase (PrmA) TehB PF03848.9 gi|345007276|ref|YP_004810128.1| - 0.099 11.8 0.0 0.19 10.8 0.0 1.3 1 0 0 1 1 1 0 Tellurite resistance protein TehB Methyltransf_15 PF09445.5 gi|345007276|ref|YP_004810128.1| - 0.2 11.2 0.0 0.31 10.5 0.0 1.2 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase HNF-1_N PF04814.8 gi|345007277|ref|YP_004810129.1| - 0.068 13.2 0.2 0.098 12.7 0.1 1.2 1 0 0 1 1 1 0 Hepatocyte nuclear factor 1 (HNF-1), N terminus DDE_Tnp_1 PF01609.16 gi|345007280|ref|YP_004810132.1| - 0.01 15.4 0.1 0.044 13.3 0.1 2.0 1 1 0 1 1 1 0 Transposase DDE domain Cdc6_C PF09079.6 gi|345007281|ref|YP_004810133.1| - 2.9e-17 62.1 0.1 3.4e-16 58.7 0.0 2.7 3 0 0 3 3 3 1 CDC6, C terminal AAA_16 PF13191.1 gi|345007281|ref|YP_004810133.1| - 3.5e-13 49.9 0.0 2.6e-12 47.1 0.0 2.3 2 1 0 2 2 2 1 AAA ATPase domain AAA PF00004.24 gi|345007281|ref|YP_004810133.1| - 1.1e-10 41.8 0.0 3.1e-10 40.3 0.0 1.8 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.1 gi|345007281|ref|YP_004810133.1| - 2.1e-07 31.1 0.0 7.2e-07 29.4 0.0 1.8 2 0 0 2 2 2 1 AAA domain DUF815 PF05673.8 gi|345007281|ref|YP_004810133.1| - 3.9e-06 25.9 0.0 8.8e-06 24.8 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF815) Arch_ATPase PF01637.13 gi|345007281|ref|YP_004810133.1| - 4.5e-05 23.2 0.0 0.0001 22.1 0.0 1.7 1 0 0 1 1 1 1 Archaeal ATPase NACHT PF05729.7 gi|345007281|ref|YP_004810133.1| - 0.0007 19.2 0.0 0.0013 18.3 0.0 1.4 1 0 0 1 1 1 1 NACHT domain NB-ARC PF00931.17 gi|345007281|ref|YP_004810133.1| - 0.002 17.0 0.0 0.0032 16.3 0.0 1.3 1 0 0 1 1 1 1 NB-ARC domain AAA_25 PF13481.1 gi|345007281|ref|YP_004810133.1| - 0.017 14.5 0.0 0.43 9.9 0.0 2.5 1 1 0 1 1 1 0 AAA domain Sigma54_activat PF00158.21 gi|345007281|ref|YP_004810133.1| - 0.019 14.4 0.0 0.034 13.6 0.0 1.4 1 0 0 1 1 1 0 Sigma-54 interaction domain IstB_IS21 PF01695.12 gi|345007281|ref|YP_004810133.1| - 0.061 12.7 0.2 0.41 10.0 0.0 2.3 2 1 0 2 2 2 0 IstB-like ATP binding protein HTH_36 PF13730.1 gi|345007281|ref|YP_004810133.1| - 0.063 13.4 0.3 0.56 10.3 0.2 2.3 1 1 0 1 1 1 0 Helix-turn-helix domain KAP_NTPase PF07693.9 gi|345007281|ref|YP_004810133.1| - 0.064 12.2 0.0 0.12 11.3 0.0 1.4 1 0 0 1 1 1 0 KAP family P-loop domain Mg_chelatase PF01078.16 gi|345007281|ref|YP_004810133.1| - 0.073 12.2 0.0 0.21 10.7 0.0 1.7 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI FTCD_N PF07837.7 gi|345007281|ref|YP_004810133.1| - 0.1 12.1 0.0 0.2 11.1 0.0 1.4 1 0 0 1 1 1 0 Formiminotransferase domain, N-terminal subdomain AAA_29 PF13555.1 gi|345007281|ref|YP_004810133.1| - 0.11 12.0 0.0 0.24 10.9 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain SWIM PF04434.12 gi|345007283|ref|YP_004810135.1| - 0.0071 15.8 0.5 0.022 14.2 0.3 1.8 1 1 0 1 1 1 1 SWIM zinc finger DUF955 PF06114.8 gi|345007284|ref|YP_004810136.1| - 1.1e-05 25.1 0.0 1.9e-05 24.3 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF955) SprT-like PF10263.4 gi|345007284|ref|YP_004810136.1| - 0.0035 17.0 0.4 0.014 15.0 0.3 1.9 1 1 0 1 1 1 1 SprT-like family Peptidase_MA_2 PF13485.1 gi|345007284|ref|YP_004810136.1| - 0.021 14.8 0.0 0.045 13.7 0.0 1.6 1 0 0 1 1 1 0 Peptidase MA superfamily DUF2268 PF10026.4 gi|345007284|ref|YP_004810136.1| - 0.048 13.0 0.0 0.1 11.9 0.0 1.5 1 0 0 1 1 1 0 Predicted Zn-dependent protease (DUF2268) Amidase PF01425.16 gi|345007284|ref|YP_004810136.1| - 0.084 11.7 0.0 0.13 11.0 0.0 1.3 1 0 0 1 1 1 0 Amidase AAA PF00004.24 gi|345007289|ref|YP_004810141.1| - 2.1e-42 144.4 0.0 3.6e-42 143.6 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_25 PF13481.1 gi|345007289|ref|YP_004810141.1| - 8.9e-08 31.7 2.1 0.00048 19.5 0.2 2.3 1 1 1 2 2 2 2 AAA domain AAA_22 PF13401.1 gi|345007289|ref|YP_004810141.1| - 3.3e-06 27.2 0.3 0.00022 21.3 0.2 2.3 1 1 0 1 1 1 1 AAA domain AAA_2 PF07724.9 gi|345007289|ref|YP_004810141.1| - 7.1e-06 26.0 0.0 1.7e-05 24.8 0.0 1.6 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) AAA_17 PF13207.1 gi|345007289|ref|YP_004810141.1| - 9.2e-06 26.4 0.1 5.1e-05 24.0 0.0 2.2 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|345007289|ref|YP_004810141.1| - 6e-05 23.1 0.4 0.00073 19.5 0.3 2.4 1 1 0 1 1 1 1 AAA ATPase domain RuvB_N PF05496.7 gi|345007289|ref|YP_004810141.1| - 0.00013 21.1 0.0 0.00026 20.1 0.0 1.6 1 1 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus AAA_33 PF13671.1 gi|345007289|ref|YP_004810141.1| - 0.00046 20.0 0.0 0.001 18.9 0.0 1.6 1 0 0 1 1 1 1 AAA domain TIP49 PF06068.8 gi|345007289|ref|YP_004810141.1| - 0.0013 17.5 0.0 0.003 16.3 0.0 1.6 1 1 0 1 1 1 1 TIP49 C-terminus AAA_18 PF13238.1 gi|345007289|ref|YP_004810141.1| - 0.0023 18.2 0.0 0.006 16.8 0.0 1.8 1 0 0 1 1 1 1 AAA domain Mg_chelatase PF01078.16 gi|345007289|ref|YP_004810141.1| - 0.0027 16.9 0.0 0.0061 15.7 0.0 1.5 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI IstB_IS21 PF01695.12 gi|345007289|ref|YP_004810141.1| - 0.0047 16.3 0.0 0.019 14.4 0.0 1.9 2 0 0 2 2 2 1 IstB-like ATP binding protein AAA_24 PF13479.1 gi|345007289|ref|YP_004810141.1| - 0.0062 16.1 0.0 0.014 15.0 0.0 1.7 1 0 0 1 1 1 1 AAA domain NACHT PF05729.7 gi|345007289|ref|YP_004810141.1| - 0.0077 15.8 0.1 0.043 13.4 0.0 1.9 2 0 0 2 2 2 1 NACHT domain AAA_5 PF07728.9 gi|345007289|ref|YP_004810141.1| - 0.0088 15.7 0.2 0.074 12.7 0.1 2.4 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) RNA_helicase PF00910.17 gi|345007289|ref|YP_004810141.1| - 0.0095 16.0 0.0 0.03 14.5 0.0 1.9 2 0 0 2 2 1 1 RNA helicase AAA_28 PF13521.1 gi|345007289|ref|YP_004810141.1| - 0.014 15.3 0.0 0.063 13.2 0.0 2.1 1 1 0 1 1 1 0 AAA domain AAA_14 PF13173.1 gi|345007289|ref|YP_004810141.1| - 0.015 15.1 0.0 0.034 14.0 0.0 1.6 1 0 0 1 1 1 0 AAA domain Arch_ATPase PF01637.13 gi|345007289|ref|YP_004810141.1| - 0.018 14.7 0.1 0.18 11.4 0.0 2.4 1 1 0 1 1 1 0 Archaeal ATPase AAA_19 PF13245.1 gi|345007289|ref|YP_004810141.1| - 0.02 14.6 0.0 0.051 13.3 0.0 1.6 1 0 0 1 1 1 0 Part of AAA domain KAP_NTPase PF07693.9 gi|345007289|ref|YP_004810141.1| - 0.034 13.1 0.1 0.94 8.4 0.1 2.2 2 0 0 2 2 2 0 KAP family P-loop domain Parvo_NS1 PF01057.12 gi|345007289|ref|YP_004810141.1| - 0.089 11.6 0.0 0.15 10.8 0.0 1.3 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 NB-ARC PF00931.17 gi|345007289|ref|YP_004810141.1| - 0.12 11.1 0.0 0.19 10.5 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain DUF2278 PF10042.4 gi|345007289|ref|YP_004810141.1| - 0.22 11.2 0.8 0.61 9.7 0.3 1.8 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2278) DUF2857 PF11198.3 gi|345007290|ref|YP_004810142.1| - 0.027 14.0 0.1 0.052 13.0 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2857) Lipoprotein_Ltp PF07553.6 gi|345007292|ref|YP_004810144.1| - 0.11 12.4 0.4 0.18 11.7 0.3 1.4 1 0 0 1 1 1 0 Host cell surface-exposed lipoprotein HATPase_c PF02518.21 gi|345007293|ref|YP_004810145.1| - 1.9e-21 75.8 0.1 3.4e-21 75.0 0.1 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.1 gi|345007293|ref|YP_004810145.1| - 3.3e-18 65.9 0.0 7.4e-18 64.8 0.0 1.6 1 0 0 1 1 1 1 PAS domain PAS PF00989.19 gi|345007293|ref|YP_004810145.1| - 3e-13 49.5 0.0 1.6e-12 47.1 0.0 2.0 2 0 0 2 2 2 1 PAS fold HisKA PF00512.20 gi|345007293|ref|YP_004810145.1| - 9.3e-13 47.9 7.6 1e-11 44.6 0.7 3.3 3 0 0 3 3 3 1 His Kinase A (phospho-acceptor) domain PAS_4 PF08448.5 gi|345007293|ref|YP_004810145.1| - 3.4e-11 43.1 0.3 9.1e-11 41.7 0.0 1.9 2 0 0 2 2 2 1 PAS fold PAS_8 PF13188.1 gi|345007293|ref|YP_004810145.1| - 5.8e-08 32.3 0.2 3.2e-07 29.9 0.0 2.4 3 0 0 3 3 3 1 PAS domain PAS_3 PF08447.6 gi|345007293|ref|YP_004810145.1| - 7.4e-06 25.9 0.0 1.6e-05 24.9 0.0 1.6 1 0 0 1 1 1 1 PAS fold HATPase_c_3 PF13589.1 gi|345007293|ref|YP_004810145.1| - 3e-05 23.6 0.0 6.7e-05 22.5 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_7 PF12860.2 gi|345007293|ref|YP_004810145.1| - 9.6e-05 22.3 0.0 0.00033 20.6 0.0 2.0 1 0 0 1 1 1 1 PAS fold UPF0270 PF06794.7 gi|345007293|ref|YP_004810145.1| - 0.0043 16.7 2.7 4.6 7.0 0.0 3.3 2 1 1 3 3 3 2 Uncharacterised protein family (UPF0270) DAHP_synth_1 PF00793.15 gi|345007293|ref|YP_004810145.1| - 0.11 11.1 0.0 0.17 10.5 0.0 1.2 1 0 0 1 1 1 0 DAHP synthetase I family Rnk_N PF14760.1 gi|345007293|ref|YP_004810145.1| - 1.4 9.0 6.0 1.6 8.8 0.1 2.9 3 0 0 3 3 2 0 Rnk N-terminus Mrr_cat PF04471.7 gi|345007294|ref|YP_004810146.1| - 2.1e-27 95.2 0.0 4.3e-27 94.2 0.0 1.5 1 0 0 1 1 1 1 Restriction endonuclease zf-ribbon_3 PF13248.1 gi|345007294|ref|YP_004810146.1| - 0.0027 16.8 1.9 0.0081 15.3 1.3 1.8 1 0 0 1 1 1 1 zinc-ribbon domain Siva PF05458.7 gi|345007294|ref|YP_004810146.1| - 0.0036 16.9 3.2 0.0066 16.0 2.2 1.4 1 0 0 1 1 1 1 Cd27 binding protein (Siva) DZR PF12773.2 gi|345007294|ref|YP_004810146.1| - 0.71 9.7 8.9 0.049 13.4 1.5 2.1 1 1 0 1 1 1 0 Double zinc ribbon NOB1_Zn_bind PF08772.6 gi|345007294|ref|YP_004810146.1| - 2 8.3 6.2 0.79 9.5 1.9 2.0 2 1 0 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like DUF164 PF02591.10 gi|345007294|ref|YP_004810146.1| - 8.4 6.3 6.5 16 5.4 0.1 3.4 2 1 1 3 3 3 0 Putative zinc ribbon domain HTH_20 PF12840.2 gi|345007296|ref|YP_004810148.1| - 3.1e-08 33.2 0.5 0.0046 16.7 0.0 2.5 2 0 0 2 2 2 2 Helix-turn-helix domain HTH_27 PF13463.1 gi|345007296|ref|YP_004810148.1| - 2.4e-07 30.9 0.7 3.4e-05 24.0 0.1 2.8 3 0 0 3 3 3 1 Winged helix DNA-binding domain MarR_2 PF12802.2 gi|345007296|ref|YP_004810148.1| - 4.9e-06 26.1 0.3 0.088 12.4 0.0 2.6 2 0 0 2 2 2 2 MarR family TrmB PF01978.14 gi|345007296|ref|YP_004810148.1| - 4.1e-05 23.2 0.1 0.018 14.7 0.0 2.4 2 0 0 2 2 2 2 Sugar-specific transcriptional regulator TrmB Rrf2 PF02082.15 gi|345007296|ref|YP_004810148.1| - 0.0014 18.7 0.0 0.068 13.2 0.0 2.4 2 0 0 2 2 2 1 Transcriptional regulator Sigma70_r3 PF04539.11 gi|345007296|ref|YP_004810148.1| - 0.016 15.1 0.1 5.2 7.0 0.0 2.5 2 0 0 2 2 2 0 Sigma-70 region 3 MarR PF01047.17 gi|345007296|ref|YP_004810148.1| - 0.043 13.5 0.0 0.15 11.7 0.0 1.9 2 0 0 2 2 2 0 MarR family HTH_5 PF01022.15 gi|345007296|ref|YP_004810148.1| - 0.047 13.3 0.0 0.13 11.9 0.0 1.8 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family HTH_10 PF04967.7 gi|345007296|ref|YP_004810148.1| - 0.076 12.6 0.0 6.2 6.4 0.0 2.6 2 0 0 2 2 2 0 HTH DNA binding domain HTH_11 PF08279.7 gi|345007296|ref|YP_004810148.1| - 0.12 12.0 0.1 7.1 6.3 0.0 2.3 2 0 0 2 2 2 0 HTH domain GntR PF00392.16 gi|345007296|ref|YP_004810148.1| - 0.15 11.5 0.4 5.8 6.4 0.0 3.1 4 0 0 4 4 4 0 Bacterial regulatory proteins, gntR family HTH_IclR PF09339.5 gi|345007296|ref|YP_004810148.1| - 2.5 7.7 9.6 0.32 10.6 0.3 2.9 4 0 0 4 4 4 0 IclR helix-turn-helix domain zinc_ribbon_2 PF13240.1 gi|345007297|ref|YP_004810149.1| - 0.0046 16.3 0.9 2.3 7.7 0.1 2.4 2 0 0 2 2 2 2 zinc-ribbon domain DZR PF12773.2 gi|345007297|ref|YP_004810149.1| - 0.0058 16.4 1.3 0.0095 15.7 0.9 1.3 1 0 0 1 1 1 1 Double zinc ribbon Nudix_N_2 PF14803.1 gi|345007297|ref|YP_004810149.1| - 0.0075 15.9 1.8 0.91 9.2 0.1 2.5 2 0 0 2 2 2 2 Nudix N-terminal DRP PF06044.7 gi|345007297|ref|YP_004810149.1| - 0.02 13.9 0.5 0.039 12.9 0.2 1.5 1 1 0 1 1 1 0 Dam-replacing family RPA_interact_C PF14768.1 gi|345007297|ref|YP_004810149.1| - 0.034 14.5 0.7 0.047 14.0 0.5 1.2 1 0 0 1 1 1 0 Replication protein A interacting C-terminal DUF2318 PF10080.4 gi|345007297|ref|YP_004810149.1| - 0.04 13.6 0.0 0.051 13.3 0.0 1.2 1 0 0 1 1 1 0 Predicted membrane protein (DUF2318) GFA PF04828.9 gi|345007297|ref|YP_004810149.1| - 0.041 13.8 1.6 0.92 9.4 0.2 2.1 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme zinc-ribbons_6 PF07191.7 gi|345007297|ref|YP_004810149.1| - 0.064 13.0 0.1 0.17 11.6 0.4 1.5 2 0 0 2 2 2 0 zinc-ribbons zf-ribbon_3 PF13248.1 gi|345007297|ref|YP_004810149.1| - 0.13 11.5 4.1 0.56 9.4 2.9 1.9 1 1 1 2 2 2 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|345007297|ref|YP_004810149.1| - 0.17 11.6 0.9 4.3 7.1 0.0 2.3 2 0 0 2 2 2 0 zinc-ribbon domain UPF0547 PF10571.4 gi|345007297|ref|YP_004810149.1| - 0.2 11.3 4.5 0.41 10.3 3.1 1.5 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 Lar_restr_allev PF14354.1 gi|345007297|ref|YP_004810149.1| - 0.21 11.9 3.6 0.6 10.4 2.5 1.8 1 1 0 1 1 1 0 Restriction alleviation protein Lar Zn_Tnp_IS1595 PF12760.2 gi|345007297|ref|YP_004810149.1| - 0.69 9.7 3.1 1.8 8.4 2.1 1.8 1 1 0 1 1 1 0 Transposase zinc-ribbon domain Cys_rich_KTR PF14205.1 gi|345007298|ref|YP_004810150.1| - 0.025 14.0 0.1 0.48 9.9 0.0 2.2 2 0 0 2 2 2 0 Cysteine-rich KTR DUF2387 PF09526.5 gi|345007298|ref|YP_004810150.1| - 0.047 13.6 0.4 0.084 12.8 0.3 1.4 1 0 0 1 1 1 0 Probable metal-binding protein (DUF2387) OrfB_Zn_ribbon PF07282.6 gi|345007298|ref|YP_004810150.1| - 0.074 12.7 0.6 0.21 11.2 0.4 1.8 1 1 1 2 2 2 0 Putative transposase DNA-binding domain Zn-ribbon_8 PF09723.5 gi|345007298|ref|YP_004810150.1| - 0.08 12.9 0.8 8.5 6.4 0.1 2.3 2 0 0 2 2 2 0 Zinc ribbon domain DnaJ_CXXCXGXG PF00684.14 gi|345007298|ref|YP_004810150.1| - 0.12 12.4 0.0 0.18 11.8 0.0 1.2 1 0 0 1 1 1 0 DnaJ central domain DUF3797 PF12677.2 gi|345007298|ref|YP_004810150.1| - 0.14 11.7 1.3 2.5 7.7 0.1 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF3797) Elf1 PF05129.8 gi|345007298|ref|YP_004810150.1| - 0.17 11.5 0.5 3.9 7.2 0.0 2.2 1 1 1 2 2 2 0 Transcription elongation factor Elf1 like PDDEXK_1 PF12705.2 gi|345007299|ref|YP_004810151.1| - 0.13 11.6 0.1 0.15 11.4 0.1 1.2 1 0 0 1 1 1 0 PD-(D/E)XK nuclease superfamily zinc_ribbon_2 PF13240.1 gi|345007303|ref|YP_004810155.1| - 0.012 15.0 7.9 0.8 9.2 1.6 3.9 4 0 0 4 4 4 0 zinc-ribbon domain zf-Mss51 PF13824.1 gi|345007303|ref|YP_004810155.1| - 0.014 15.2 4.9 6.4 6.7 0.1 3.5 2 1 1 3 3 3 0 Zinc-finger of mitochondrial splicing suppressor 51 DZR PF12773.2 gi|345007303|ref|YP_004810155.1| - 0.07 12.9 11.5 0.21 11.4 0.3 3.6 3 1 1 4 4 4 0 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|345007303|ref|YP_004810155.1| - 0.28 10.4 11.4 0.23 10.7 1.6 3.5 4 0 0 4 4 4 0 zinc-ribbon domain RNA_POL_M_15KD PF02150.11 gi|345007303|ref|YP_004810155.1| - 0.52 10.0 8.8 3.5 7.3 0.1 4.3 5 0 0 5 5 5 0 RNA polymerases M/15 Kd subunit HypA PF01155.14 gi|345007303|ref|YP_004810155.1| - 0.73 9.5 5.7 1 9.0 0.3 2.4 2 0 0 2 2 2 0 Hydrogenase expression/synthesis hypA family UPF0547 PF10571.4 gi|345007303|ref|YP_004810155.1| - 3.6 7.3 11.5 0.1 12.3 0.8 3.0 3 0 0 3 3 3 0 Uncharacterised protein family UPF0547 TFIIB PF00382.14 gi|345007304|ref|YP_004810156.1| - 1.2e-31 108.2 0.9 3.6e-17 61.9 0.1 2.3 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.7 gi|345007304|ref|YP_004810156.1| - 1.4e-12 46.7 3.1 2.6e-12 45.8 2.1 1.5 1 0 0 1 1 1 1 TFIIB zinc-binding Cyclin_C PF02984.14 gi|345007304|ref|YP_004810156.1| - 0.0036 17.2 0.0 0.062 13.2 0.0 2.2 2 0 0 2 2 2 1 Cyclin, C-terminal domain Sigma70_r4 PF04545.11 gi|345007304|ref|YP_004810156.1| - 0.023 13.9 0.0 0.22 10.8 0.0 2.5 2 0 0 2 2 2 0 Sigma-70, region 4 OrfB_Zn_ribbon PF07282.6 gi|345007304|ref|YP_004810156.1| - 0.034 13.8 1.0 0.088 12.4 0.7 1.7 1 0 0 1 1 1 0 Putative transposase DNA-binding domain HTH_24 PF13412.1 gi|345007304|ref|YP_004810156.1| - 0.045 13.1 0.0 0.16 11.3 0.0 1.9 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding DZR PF12773.2 gi|345007304|ref|YP_004810156.1| - 0.088 12.6 2.4 0.1 12.4 0.8 1.7 2 0 0 2 2 2 0 Double zinc ribbon zinc-ribbons_6 PF07191.7 gi|345007304|ref|YP_004810156.1| - 0.25 11.1 2.7 0.17 11.6 0.6 1.7 2 0 0 2 2 2 0 zinc-ribbons Prok-RING_1 PF14446.1 gi|345007304|ref|YP_004810156.1| - 0.34 10.6 3.3 0.73 9.6 2.3 1.5 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 UPF0547 PF10571.4 gi|345007304|ref|YP_004810156.1| - 0.37 10.5 2.2 0.74 9.5 1.5 1.5 1 0 0 1 1 1 0 Uncharacterised protein family UPF0547 tRNA_anti-codon PF01336.20 gi|345007305|ref|YP_004810157.1| - 0.0087 15.8 0.0 0.019 14.8 0.0 1.6 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain DDE_Tnp_IS66_C PF13817.1 gi|345007306|ref|YP_004810158.1| - 0.048 13.6 0.1 3.1 7.9 0.0 2.4 2 0 0 2 2 2 0 IS66 C-terminal element UPF0175 PF03683.8 gi|345007307|ref|YP_004810159.1| - 2.1e-12 46.3 0.1 2.3e-12 46.2 0.1 1.1 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0175) Atg14 PF10186.4 gi|345007310|ref|YP_004810162.1| - 0.001 18.1 0.1 0.0017 17.3 0.1 1.3 1 0 0 1 1 1 1 UV radiation resistance protein and autophagy-related subunit 14 CENP-Q PF13094.1 gi|345007310|ref|YP_004810162.1| - 0.0021 18.1 6.3 0.0045 17.0 4.4 1.5 1 0 0 1 1 1 1 CENP-Q, a CENPA-CAD centromere complex subunit DivIC PF04977.10 gi|345007310|ref|YP_004810162.1| - 0.0074 15.7 1.3 0.019 14.4 0.9 1.6 1 0 0 1 1 1 1 Septum formation initiator DUF1192 PF06698.6 gi|345007310|ref|YP_004810162.1| - 0.013 15.2 2.0 0.058 13.2 1.4 2.1 1 1 0 1 1 1 0 Protein of unknown function (DUF1192) DUF972 PF06156.8 gi|345007310|ref|YP_004810162.1| - 0.027 14.8 1.3 0.068 13.5 0.9 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF972) SlyX PF04102.7 gi|345007310|ref|YP_004810162.1| - 0.033 14.5 1.6 0.033 14.5 1.1 2.4 3 0 0 3 3 3 0 SlyX HSBP1 PF06825.7 gi|345007310|ref|YP_004810162.1| - 0.054 13.0 0.4 0.31 10.6 0.3 2.2 1 1 0 1 1 1 0 Heat shock factor binding protein 1 TMF_DNA_bd PF12329.3 gi|345007310|ref|YP_004810162.1| - 0.066 13.0 4.2 0.14 12.0 2.9 1.5 1 0 0 1 1 1 0 TATA element modulatory factor 1 DNA binding Prefoldin PF02996.12 gi|345007310|ref|YP_004810162.1| - 0.088 12.4 2.8 0.073 12.7 0.6 1.8 2 0 0 2 2 2 0 Prefoldin subunit DUF1664 PF07889.7 gi|345007310|ref|YP_004810162.1| - 0.13 12.0 0.6 0.25 11.1 0.4 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1664) IncA PF04156.9 gi|345007310|ref|YP_004810162.1| - 2.5 7.6 5.2 4.4 6.8 3.6 1.3 1 0 0 1 1 1 0 IncA protein AAA_10 PF12846.2 gi|345007311|ref|YP_004810163.1| - 6.5e-15 55.3 0.6 5.3e-14 52.3 0.4 2.2 2 0 0 2 2 2 1 AAA-like domain TraG-D_C PF12696.2 gi|345007311|ref|YP_004810163.1| - 0.00043 20.1 0.0 0.0016 18.3 0.0 2.0 2 0 0 2 2 2 1 TraM recognition site of TraD and TraG TrwB_AAD_bind PF10412.4 gi|345007311|ref|YP_004810163.1| - 0.00087 18.0 0.0 0.096 11.2 0.0 2.2 2 0 0 2 2 2 2 Type IV secretion-system coupling protein DNA-binding domain DUF87 PF01935.12 gi|345007311|ref|YP_004810163.1| - 0.0019 18.0 0.0 0.0073 16.1 0.0 2.0 1 0 0 1 1 1 1 Domain of unknown function DUF87 AAA_10 PF12846.2 gi|345007312|ref|YP_004810164.1| - 1.3e-38 133.1 1.8 1.5e-38 132.9 0.4 1.7 2 0 0 2 2 2 1 AAA-like domain CagE_TrbE_VirB PF03135.9 gi|345007312|ref|YP_004810164.1| - 4.7e-05 23.2 0.0 9e-05 22.3 0.0 1.4 1 0 0 1 1 1 1 CagE, TrbE, VirB family, component of type IV transporter system Zot PF05707.7 gi|345007312|ref|YP_004810164.1| - 0.0041 16.6 0.4 0.025 14.0 0.1 2.1 2 0 0 2 2 2 1 Zonular occludens toxin (Zot) AAA_22 PF13401.1 gi|345007312|ref|YP_004810164.1| - 0.005 16.9 2.0 0.36 10.9 0.1 3.1 3 1 1 4 4 4 1 AAA domain SPO22 PF08631.5 gi|345007313|ref|YP_004810165.1| - 0.056 12.5 0.0 5 6.1 0.0 2.2 2 0 0 2 2 2 0 Meiosis protein SPO22/ZIP4 like A2M_N PF01835.14 gi|345007315|ref|YP_004810167.1| - 0.0065 16.7 0.1 0.37 11.0 0.0 2.7 2 1 0 2 2 2 1 MG2 domain DUF461 PF04314.8 gi|345007315|ref|YP_004810167.1| - 0.062 12.9 0.0 0.23 11.1 0.0 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF461) DUF2793 PF10983.3 gi|345007316|ref|YP_004810168.1| - 1.1 9.0 5.5 3.2 7.6 0.1 3.2 3 0 0 3 3 3 0 Protein of unknown function (DUF2793) TrbC PF04956.8 gi|345007317|ref|YP_004810169.1| - 0.072 13.1 2.5 0.1 12.6 0.7 1.8 2 0 0 2 2 2 0 TrbC/VIRB2 family DUF3486 PF11985.3 gi|345007318|ref|YP_004810170.1| - 0.052 13.5 0.2 0.073 13.1 0.1 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF3486) Metal_resist PF13801.1 gi|345007318|ref|YP_004810170.1| - 0.11 12.5 0.3 0.13 12.2 0.2 1.1 1 0 0 1 1 1 0 Heavy-metal resistance HisKA PF00512.20 gi|345007318|ref|YP_004810170.1| - 0.13 12.2 0.5 0.17 11.8 0.3 1.2 1 0 0 1 1 1 0 His Kinase A (phospho-acceptor) domain RHH_1 PF01402.16 gi|345007318|ref|YP_004810170.1| - 0.15 11.9 0.6 1.5 8.8 0.1 2.1 2 0 0 2 2 2 0 Ribbon-helix-helix protein, copG family RNA_pol_Rpb2_5 PF04567.12 gi|345007319|ref|YP_004810171.1| - 0.067 13.1 0.3 0.13 12.2 0.2 1.5 1 0 0 1 1 1 0 RNA polymerase Rpb2, domain 5 PRiA4_ORF3 PF07929.6 gi|345007320|ref|YP_004810172.1| - 5.6e-14 51.9 0.1 1.8e-13 50.2 0.1 1.7 1 1 0 1 1 1 1 Plasmid pRiA4b ORF-3-like protein AHSA1 PF08327.6 gi|345007320|ref|YP_004810172.1| - 0.029 14.4 0.0 0.051 13.6 0.0 1.5 1 0 0 1 1 1 0 Activator of Hsp90 ATPase homolog 1-like protein DDE_Tnp_1 PF01609.16 gi|345007321|ref|YP_004810173.1| - 8.7e-10 38.5 0.0 1.7e-09 37.5 0.0 1.4 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1 PF01609.16 gi|345007322|ref|YP_004810174.1| - 0.0083 15.6 0.0 0.035 13.6 0.0 2.0 1 1 0 1 1 1 1 Transposase DDE domain UDPG_MGDP_dh_N PF03721.9 gi|345007323|ref|YP_004810175.1| - 2e-53 180.5 0.1 1.1e-52 178.1 0.0 2.0 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain UDPG_MGDP_dh PF00984.14 gi|345007323|ref|YP_004810175.1| - 1.8e-35 121.0 0.0 3.2e-35 120.2 0.0 1.4 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, central domain UDPG_MGDP_dh_C PF03720.10 gi|345007323|ref|YP_004810175.1| - 8.2e-28 96.6 0.0 2.8e-27 94.9 0.0 1.9 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain NAD_Gly3P_dh_N PF01210.18 gi|345007323|ref|YP_004810175.1| - 2e-06 27.6 0.0 4.8e-06 26.3 0.0 1.8 1 1 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 3HCDH_N PF02737.13 gi|345007323|ref|YP_004810175.1| - 4.3e-05 23.2 0.1 0.00013 21.6 0.0 1.9 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AlaDh_PNT_C PF01262.16 gi|345007323|ref|YP_004810175.1| - 0.0012 18.4 0.0 0.0031 17.1 0.0 1.7 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain Pyr_redox PF00070.22 gi|345007323|ref|YP_004810175.1| - 0.0013 19.1 0.2 0.0066 16.8 0.0 2.3 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase ApbA PF02558.11 gi|345007323|ref|YP_004810175.1| - 0.0021 17.5 0.0 0.0072 15.7 0.0 1.9 2 1 0 2 2 2 1 Ketopantoate reductase PanE/ApbA F420_oxidored PF03807.12 gi|345007323|ref|YP_004810175.1| - 0.0038 17.6 0.2 3.5 8.1 0.0 4.0 4 1 0 4 4 4 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_11 PF14833.1 gi|345007323|ref|YP_004810175.1| - 0.0079 16.2 0.4 0.08 13.0 0.3 2.3 1 1 0 1 1 1 1 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase NAD_binding_2 PF03446.10 gi|345007323|ref|YP_004810175.1| - 0.016 15.0 0.1 0.079 12.7 0.0 2.1 2 0 0 2 2 2 0 NAD binding domain of 6-phosphogluconate dehydrogenase 2-Hacid_dh_C PF02826.14 gi|345007323|ref|YP_004810175.1| - 0.027 13.6 0.0 0.41 9.7 0.0 2.3 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain TrkA_N PF02254.13 gi|345007323|ref|YP_004810175.1| - 0.028 14.4 0.2 0.44 10.5 0.0 2.8 3 0 0 3 3 3 0 TrkA-N domain B12-binding PF02310.14 gi|345007323|ref|YP_004810175.1| - 0.05 13.4 1.2 3.3 7.6 0.0 3.3 2 2 0 2 2 2 0 B12 binding domain DAO PF01266.19 gi|345007323|ref|YP_004810175.1| - 0.08 11.8 2.5 0.13 11.0 0.4 2.3 3 0 0 3 3 3 0 FAD dependent oxidoreductase FLYWCH_N PF15423.1 gi|345007323|ref|YP_004810175.1| - 0.12 12.5 0.1 2.8 8.1 0.1 2.4 2 0 0 2 2 2 0 FLYWCH-type zinc finger-containing protein HTH_20 PF12840.2 gi|345007324|ref|YP_004810176.1| - 1.5e-05 24.6 0.0 1.9e-05 24.3 0.0 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_27 PF13463.1 gi|345007324|ref|YP_004810176.1| - 6.7e-05 23.1 0.0 8.6e-05 22.7 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_45 PF14947.1 gi|345007324|ref|YP_004810176.1| - 0.00021 21.0 0.0 0.00027 20.7 0.0 1.1 1 0 0 1 1 1 1 Winged helix-turn-helix MarR_2 PF12802.2 gi|345007324|ref|YP_004810176.1| - 0.0015 18.1 0.0 0.0021 17.6 0.0 1.1 1 0 0 1 1 1 1 MarR family HTH_Crp_2 PF13545.1 gi|345007324|ref|YP_004810176.1| - 0.0047 16.6 0.0 0.0055 16.4 0.0 1.2 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_36 PF13730.1 gi|345007324|ref|YP_004810176.1| - 0.0074 16.3 0.0 0.012 15.7 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_34 PF13601.1 gi|345007324|ref|YP_004810176.1| - 0.019 15.0 0.0 0.023 14.7 0.0 1.1 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_IclR PF09339.5 gi|345007324|ref|YP_004810176.1| - 0.022 14.3 0.0 0.03 13.9 0.0 1.2 1 0 0 1 1 1 0 IclR helix-turn-helix domain DUF1495 PF07381.6 gi|345007324|ref|YP_004810176.1| - 0.022 14.3 0.0 0.079 12.6 0.0 1.7 1 1 0 1 1 1 0 Winged helix DNA-binding domain (DUF1495) Replic_Relax PF13814.1 gi|345007324|ref|YP_004810176.1| - 0.024 14.4 0.0 0.031 14.1 0.0 1.1 1 0 0 1 1 1 0 Replication-relaxation MarR PF01047.17 gi|345007324|ref|YP_004810176.1| - 0.08 12.6 0.0 0.12 12.1 0.0 1.3 1 0 0 1 1 1 0 MarR family Trp_repressor PF01371.14 gi|345007324|ref|YP_004810176.1| - 0.084 12.7 0.0 0.11 12.4 0.0 1.2 1 0 0 1 1 1 0 Trp repressor protein HTH_1 PF00126.22 gi|345007324|ref|YP_004810176.1| - 0.12 12.1 0.0 0.17 11.6 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family DUF1328 PF07043.8 gi|345007326|ref|YP_004810178.1| - 1.2e-09 37.9 15.8 1.9e-09 37.3 11.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1328) Chitin_synth_2 PF03142.10 gi|345007326|ref|YP_004810178.1| - 1.5 7.1 4.7 1.8 6.8 3.3 1.1 1 0 0 1 1 1 0 Chitin synthase zinc_ribbon_4 PF13717.1 gi|345007327|ref|YP_004810179.1| - 0.00051 19.6 0.6 0.093 12.4 0.0 2.1 2 0 0 2 2 2 1 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|345007327|ref|YP_004810179.1| - 0.00083 18.8 0.8 0.1 12.2 0.1 2.1 2 0 0 2 2 2 1 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|345007327|ref|YP_004810179.1| - 0.0016 17.5 0.4 0.035 13.3 0.0 2.1 2 0 0 2 2 2 1 zinc-ribbon domain DZR PF12773.2 gi|345007327|ref|YP_004810179.1| - 0.0018 18.0 1.0 0.0037 17.0 0.7 1.5 1 1 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|345007327|ref|YP_004810179.1| - 0.0045 16.4 1.6 0.056 12.9 0.2 2.2 2 0 0 2 2 2 1 zinc-ribbon domain zf-LITAF-like PF10601.4 gi|345007327|ref|YP_004810179.1| - 0.0085 15.9 1.7 1.9 8.3 0.1 2.1 1 1 1 2 2 2 2 LITAF-like zinc ribbon domain Yippee-Mis18 PF03226.9 gi|345007327|ref|YP_004810179.1| - 0.016 15.1 1.1 0.56 10.2 0.1 2.0 1 1 1 2 2 2 0 Yippee zinc-binding/DNA-binding /Mis18, centromere assembly zf-C4_Topoisom PF01396.14 gi|345007327|ref|YP_004810179.1| - 0.019 14.4 1.2 0.7 9.4 0.1 2.1 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger Lar_restr_allev PF14354.1 gi|345007327|ref|YP_004810179.1| - 0.033 14.4 0.4 0.047 13.9 0.3 1.3 1 0 0 1 1 1 0 Restriction alleviation protein Lar Zn-ribbon_8 PF09723.5 gi|345007327|ref|YP_004810179.1| - 0.058 13.3 0.4 2.3 8.2 0.0 2.1 2 0 0 2 2 2 0 Zinc ribbon domain zf-TFIIB PF13453.1 gi|345007327|ref|YP_004810179.1| - 0.069 12.3 0.5 0.12 11.6 0.3 1.4 1 1 0 1 1 1 0 Transcription factor zinc-finger zf-ISL3 PF14690.1 gi|345007327|ref|YP_004810179.1| - 0.076 13.0 0.4 0.57 10.2 0.0 2.0 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zinc-ribbons_6 PF07191.7 gi|345007327|ref|YP_004810179.1| - 0.09 12.5 1.2 0.19 11.5 0.8 1.5 1 1 0 1 1 1 0 zinc-ribbons TF_Zn_Ribbon PF08271.7 gi|345007327|ref|YP_004810179.1| - 0.12 11.7 2.5 5.6 6.3 0.4 2.1 2 0 0 2 2 2 0 TFIIB zinc-binding zf-IS66 PF13005.2 gi|345007327|ref|YP_004810179.1| - 0.2 11.6 2.1 0.64 10.0 0.1 2.1 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 Zn_Tnp_IS1595 PF12760.2 gi|345007327|ref|YP_004810179.1| - 0.35 10.7 3.5 9.2 6.1 2.6 2.0 1 1 1 2 2 2 0 Transposase zinc-ribbon domain UPF0547 PF10571.4 gi|345007327|ref|YP_004810179.1| - 0.37 10.5 0.2 0.37 10.5 0.1 2.0 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zf-HYPF PF07503.7 gi|345007327|ref|YP_004810179.1| - 0.39 10.1 2.0 6.4 6.2 0.3 2.1 2 0 0 2 2 2 0 HypF finger Eapp_C PF10238.4 gi|345007327|ref|YP_004810179.1| - 0.66 9.8 2.6 1.1 9.1 0.2 1.9 1 1 1 2 2 2 0 E2F-associated phosphoprotein Zn_Tnp_IS1 PF03811.8 gi|345007327|ref|YP_004810179.1| - 2.9 7.4 4.8 8.8 5.9 0.1 2.5 2 1 0 2 2 2 0 InsA N-terminal domain DUF1059 PF06348.6 gi|345007329|ref|YP_004810181.1| - 2.9e-11 43.0 1.5 3.1e-11 42.9 1.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1059) DUF3486 PF11985.3 gi|345007329|ref|YP_004810181.1| - 0.034 14.2 0.1 0.039 14.0 0.1 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3486) DUF217 PF02697.9 gi|345007330|ref|YP_004810182.1| - 0.12 12.6 0.0 0.13 12.5 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized ACR, COG1753 OrfB_IS605 PF01385.14 gi|345007331|ref|YP_004810183.1| - 4.3e-57 193.1 0.1 6.3e-57 192.5 0.1 1.2 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|345007331|ref|YP_004810183.1| - 4e-18 64.8 0.2 1.1e-17 63.4 0.2 1.8 1 0 0 1 1 1 1 Putative transposase DNA-binding domain Prim_Zn_Ribbon PF08273.7 gi|345007331|ref|YP_004810183.1| - 1.4 9.0 7.0 0.22 11.6 2.0 1.9 2 0 0 2 2 2 0 Zinc-binding domain of primase-helicase Ferritin_2 PF13668.1 gi|345007333|ref|YP_004810185.1| - 2.2e-39 134.5 0.6 3.8e-39 133.7 0.4 1.4 1 0 0 1 1 1 1 Ferritin-like domain TrmB PF01978.14 gi|345007334|ref|YP_004810186.1| - 4.4e-16 58.3 0.0 7.1e-16 57.6 0.0 1.3 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB DUF2250 PF10007.4 gi|345007334|ref|YP_004810186.1| - 0.015 15.1 0.0 0.047 13.6 0.0 1.8 1 1 1 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) Cdc6_C PF09079.6 gi|345007334|ref|YP_004810186.1| - 0.031 14.0 0.0 0.048 13.3 0.0 1.4 1 0 0 1 1 1 0 CDC6, C terminal HTH_42 PF06224.7 gi|345007334|ref|YP_004810186.1| - 0.032 13.5 0.1 0.042 13.1 0.1 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_IclR PF09339.5 gi|345007334|ref|YP_004810186.1| - 0.12 11.9 0.0 0.26 10.8 0.0 1.6 1 0 0 1 1 1 0 IclR helix-turn-helix domain Ribosomal_S27e PF01667.12 gi|345007335|ref|YP_004810187.1| - 0.16 11.5 0.1 0.22 11.0 0.0 1.2 1 0 0 1 1 1 0 Ribosomal protein S27 Phage_integrase PF00589.17 gi|345007336|ref|YP_004810188.1| - 4e-06 26.5 0.0 1.5e-05 24.7 0.0 1.8 2 1 0 2 2 2 1 Phage integrase family Phage_int_SAM_1 PF02899.12 gi|345007336|ref|YP_004810188.1| - 0.019 15.1 0.2 11 6.2 0.0 2.8 2 1 1 3 3 3 0 Phage integrase, N-terminal SAM-like domain PRiA4_ORF3 PF07929.6 gi|345007337|ref|YP_004810189.1| - 1.5e-11 44.0 0.0 1.9e-11 43.6 0.0 1.1 1 0 0 1 1 1 1 Plasmid pRiA4b ORF-3-like protein DUF3368 PF11848.3 gi|345007338|ref|YP_004810190.1| - 6.1e-05 22.5 0.0 0.00014 21.3 0.0 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF3368) PIN PF01850.16 gi|345007338|ref|YP_004810190.1| - 0.013 15.8 0.2 0.024 14.9 0.0 1.6 2 0 0 2 2 2 0 PIN domain UPF0175 PF03683.8 gi|345007339|ref|YP_004810191.1| - 1.2e-17 63.0 1.6 1.7e-17 62.6 1.1 1.2 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0175) RHH_2 PF03693.9 gi|345007339|ref|YP_004810191.1| - 0.11 12.6 0.1 0.14 12.2 0.0 1.3 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0156) Hydrolase PF00702.21 gi|345007340|ref|YP_004810192.1| - 3.4e-53 181.2 8.2 8.7e-53 179.9 5.7 1.7 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase E1-E2_ATPase PF00122.15 gi|345007340|ref|YP_004810192.1| - 2.6e-51 173.8 0.3 2.6e-51 173.8 0.2 1.7 2 0 0 2 2 2 1 E1-E2 ATPase HMA PF00403.21 gi|345007340|ref|YP_004810192.1| - 2.1e-25 88.6 0.1 9.8e-12 44.8 0.0 3.2 3 0 0 3 3 3 2 Heavy-metal-associated domain HAD PF12710.2 gi|345007340|ref|YP_004810192.1| - 8.3e-19 68.5 0.0 2.5e-18 66.9 0.0 1.9 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|345007340|ref|YP_004810192.1| - 4.4e-06 26.4 1.3 0.031 13.8 0.4 2.7 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.1 gi|345007340|ref|YP_004810192.1| - 0.00021 21.1 0.5 0.0027 17.5 0.0 3.1 4 0 0 4 4 4 1 Haloacid dehalogenase-like hydrolase HTH_24 PF13412.1 gi|345007340|ref|YP_004810192.1| - 0.024 14.0 0.1 4.3 6.8 0.0 2.6 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding Fe-ADH_2 PF13685.1 gi|345007340|ref|YP_004810192.1| - 0.026 13.8 0.1 0.41 9.9 0.1 2.6 3 0 0 3 3 3 0 Iron-containing alcohol dehydrogenase CBS PF00571.23 gi|345007340|ref|YP_004810192.1| - 0.076 12.8 0.5 3.1 7.6 0.0 3.3 2 1 1 3 3 3 0 CBS domain DUF464 PF04327.7 gi|345007340|ref|YP_004810192.1| - 0.12 12.6 0.2 8 6.7 0.0 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF464) Sgf11 PF08209.6 gi|345007340|ref|YP_004810192.1| - 0.39 10.0 1.2 8.7 5.7 0.1 2.3 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) PgaD PF13994.1 gi|345007340|ref|YP_004810192.1| - 1.8 8.0 4.0 5.4 6.5 2.3 2.1 2 0 0 2 2 2 0 PgaD-like protein HTH_AsnC-type PF13404.1 gi|345007341|ref|YP_004810193.1| - 5.3e-15 54.6 0.3 9.8e-15 53.8 0.2 1.5 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.1 gi|345007341|ref|YP_004810193.1| - 8e-15 53.9 0.0 1.2e-14 53.4 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.15 gi|345007341|ref|YP_004810193.1| - 7.9e-06 25.4 0.0 1.5e-05 24.5 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR PF01047.17 gi|345007341|ref|YP_004810193.1| - 9.6e-05 22.0 0.0 0.00017 21.2 0.0 1.4 1 0 0 1 1 1 1 MarR family Arc_trans_TRASH PF08394.5 gi|345007341|ref|YP_004810193.1| - 9.8e-05 22.4 0.6 0.00015 21.8 0.4 1.3 1 0 0 1 1 1 1 Archaeal TRASH domain MarR_2 PF12802.2 gi|345007341|ref|YP_004810193.1| - 0.00011 21.8 0.1 0.00022 20.8 0.1 1.5 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.2 gi|345007341|ref|YP_004810193.1| - 0.0002 21.0 0.1 0.00052 19.7 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.14 gi|345007341|ref|YP_004810193.1| - 0.0025 17.4 0.0 0.0061 16.2 0.0 1.7 2 0 0 2 2 1 1 Sugar-specific transcriptional regulator TrmB zf-FCS PF06467.9 gi|345007341|ref|YP_004810193.1| - 0.0053 16.3 0.9 0.0092 15.6 0.6 1.4 1 0 0 1 1 1 1 MYM-type Zinc finger with FCS sequence motif HTH_IclR PF09339.5 gi|345007341|ref|YP_004810193.1| - 0.0054 16.2 0.3 0.025 14.1 0.0 2.0 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_27 PF13463.1 gi|345007341|ref|YP_004810193.1| - 0.01 16.1 0.0 0.021 15.1 0.0 1.5 1 1 0 1 1 1 0 Winged helix DNA-binding domain YHS PF04945.8 gi|345007341|ref|YP_004810193.1| - 0.016 15.0 0.3 0.027 14.2 0.2 1.4 1 0 0 1 1 1 0 YHS domain RRN7 PF11781.3 gi|345007341|ref|YP_004810193.1| - 0.065 12.7 3.4 4.7 6.8 0.5 2.3 2 0 0 2 2 2 0 RNA polymerase I-specific transcription initiation factor Rrn7 HTH_11 PF08279.7 gi|345007341|ref|YP_004810193.1| - 0.066 12.8 0.0 0.11 12.0 0.0 1.4 1 0 0 1 1 1 0 HTH domain DUF2296 PF10058.4 gi|345007341|ref|YP_004810193.1| - 0.075 12.7 0.2 0.14 11.9 0.1 1.4 1 0 0 1 1 1 0 Predicted integral membrane metal-binding protein (DUF2296) HTH_34 PF13601.1 gi|345007341|ref|YP_004810193.1| - 0.09 12.8 0.0 0.17 11.8 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_Tnp_ISL3 PF13542.1 gi|345007341|ref|YP_004810193.1| - 0.094 11.9 0.0 0.26 10.5 0.0 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 Fe_dep_repress PF01325.14 gi|345007341|ref|YP_004810193.1| - 0.11 12.4 0.0 0.17 11.8 0.0 1.3 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain FaeA PF04703.7 gi|345007341|ref|YP_004810193.1| - 0.12 12.5 0.0 0.6 10.3 0.0 2.0 1 1 0 1 1 1 0 FaeA-like protein ATPase-cat_bd PF12156.3 gi|345007341|ref|YP_004810193.1| - 0.39 11.2 4.7 0.3 11.6 2.2 1.6 2 0 0 2 2 1 0 Putative metal-binding domain of cation transport ATPase GD_AH_C PF04295.8 gi|345007342|ref|YP_004810194.1| - 0.1 11.2 0.0 0.14 10.8 0.0 1.1 1 0 0 1 1 1 0 D-galactarate dehydratase / Altronate hydrolase, C terminus CbiA PF01656.18 gi|345007343|ref|YP_004810195.1| - 7.1e-17 61.4 0.0 8.7e-17 61.1 0.0 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain MipZ PF09140.6 gi|345007343|ref|YP_004810195.1| - 1.4e-07 30.9 0.1 6.3e-07 28.7 0.0 1.9 1 1 0 1 1 1 1 ATPase MipZ YhjQ PF06564.7 gi|345007343|ref|YP_004810195.1| - 4e-07 29.6 0.0 7.8e-07 28.6 0.0 1.4 1 0 0 1 1 1 1 YhjQ protein AAA_31 PF13614.1 gi|345007343|ref|YP_004810195.1| - 4.3e-07 29.9 0.1 2.6e-06 27.4 0.0 2.1 1 1 0 1 1 1 1 AAA domain ArsA_ATPase PF02374.10 gi|345007343|ref|YP_004810195.1| - 0.00073 18.6 0.0 0.0018 17.3 0.0 1.5 1 1 0 1 1 1 1 Anion-transporting ATPase Fer4_NifH PF00142.13 gi|345007343|ref|YP_004810195.1| - 0.019 14.1 0.0 0.32 10.1 0.0 2.3 2 0 0 2 2 2 0 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family VirC1 PF07015.6 gi|345007343|ref|YP_004810195.1| - 0.12 11.4 0.0 0.46 9.5 0.0 1.9 2 1 0 2 2 2 0 VirC1 protein Glyoxalase_3 PF13468.1 gi|345007344|ref|YP_004810196.1| - 1.3e-19 70.8 0.1 2.1e-18 66.8 0.0 2.1 2 0 0 2 2 2 1 Glyoxalase-like domain Glyoxalase_4 PF13669.1 gi|345007344|ref|YP_004810196.1| - 6.8e-07 29.2 0.1 1.3e-06 28.3 0.0 1.4 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_2 PF12681.2 gi|345007344|ref|YP_004810196.1| - 0.013 16.0 0.1 0.2 12.2 0.0 2.6 2 1 0 2 2 2 0 Glyoxalase-like domain Glycos_transf_2 PF00535.21 gi|345007345|ref|YP_004810197.1| - 1.5e-09 37.7 0.0 2.4e-09 37.0 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_2 PF10111.4 gi|345007345|ref|YP_004810197.1| - 9.8e-08 31.4 0.0 3e-06 26.5 0.0 2.1 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_3 PF13641.1 gi|345007345|ref|YP_004810197.1| - 1.1e-05 25.3 0.2 3.9e-05 23.5 0.2 1.8 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_transf_7C PF02709.9 gi|345007345|ref|YP_004810197.1| - 9e-05 21.8 0.3 0.00014 21.2 0.2 1.3 1 0 0 1 1 1 1 N-terminal domain of galactosyltransferase Glyco_transf_21 PF13506.1 gi|345007345|ref|YP_004810197.1| - 0.00022 20.5 0.0 0.00048 19.4 0.0 1.6 1 1 0 1 1 1 1 Glycosyl transferase family 21 Glyco_trans_2_3 PF13632.1 gi|345007345|ref|YP_004810197.1| - 0.00066 19.4 0.4 0.0015 18.2 0.2 1.5 1 1 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_tranf_2_5 PF13712.1 gi|345007345|ref|YP_004810197.1| - 0.044 13.0 0.0 0.13 11.4 0.0 1.7 1 1 0 2 2 2 0 Glycosyltransferase like family DDE_Tnp_IS66 PF03050.9 gi|345007346|ref|YP_004810198.1| - 3e-53 180.8 0.2 3e-53 180.8 0.1 1.8 2 0 0 2 2 2 1 Transposase IS66 family Atg14 PF10186.4 gi|345007346|ref|YP_004810198.1| - 0.00026 20.0 1.8 0.00055 18.9 1.3 1.5 1 0 0 1 1 1 1 UV radiation resistance protein and autophagy-related subunit 14 SlyX PF04102.7 gi|345007346|ref|YP_004810198.1| - 0.00064 20.0 4.5 0.0017 18.6 3.1 1.8 1 0 0 1 1 1 1 SlyX DASH_Spc34 PF08657.5 gi|345007346|ref|YP_004810198.1| - 0.0012 18.5 3.2 0.0026 17.4 2.2 1.6 1 0 0 1 1 1 1 DASH complex subunit Spc34 IncA PF04156.9 gi|345007346|ref|YP_004810198.1| - 0.0033 17.0 4.1 0.0033 17.0 2.9 1.7 2 0 0 2 2 1 1 IncA protein Fmp27_WPPW PF10359.4 gi|345007346|ref|YP_004810198.1| - 0.0039 15.6 2.7 0.0055 15.1 1.9 1.1 1 0 0 1 1 1 1 RNA pol II promoter Fmp27 protein domain DUF869 PF05911.6 gi|345007346|ref|YP_004810198.1| - 0.0053 15.0 1.3 0.0072 14.6 0.9 1.1 1 0 0 1 1 1 1 Plant protein of unknown function (DUF869) ATG16 PF08614.6 gi|345007346|ref|YP_004810198.1| - 0.0068 16.2 8.4 0.015 15.1 5.8 1.5 1 0 0 1 1 1 1 Autophagy protein 16 (ATG16) DUF16 PF01519.11 gi|345007346|ref|YP_004810198.1| - 0.016 15.4 3.3 0.036 14.2 2.3 1.5 1 0 0 1 1 1 0 Protein of unknown function DUF16 DUF3584 PF12128.3 gi|345007346|ref|YP_004810198.1| - 0.022 12.1 5.7 0.032 11.5 4.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) DDE_Tnp_IS240 PF13610.1 gi|345007346|ref|YP_004810198.1| - 0.042 13.8 3.6 0.52 10.2 0.1 2.6 2 1 0 2 2 2 0 DDE domain Exonuc_VII_L PF02601.10 gi|345007346|ref|YP_004810198.1| - 0.099 11.8 1.2 0.17 11.0 0.8 1.3 1 0 0 1 1 1 0 Exonuclease VII, large subunit DUF4446 PF14584.1 gi|345007346|ref|YP_004810198.1| - 0.1 12.4 2.7 0.2 11.4 1.9 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF4446) AAA_13 PF13166.1 gi|345007346|ref|YP_004810198.1| - 0.11 10.8 4.6 0.17 10.2 3.2 1.1 1 0 0 1 1 1 0 AAA domain DUF1664 PF07889.7 gi|345007346|ref|YP_004810198.1| - 0.12 12.2 2.1 0.21 11.3 1.5 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1664) AAA_23 PF13476.1 gi|345007346|ref|YP_004810198.1| - 0.12 12.6 6.7 0.24 11.7 4.6 1.4 1 0 0 1 1 1 0 AAA domain TMF_DNA_bd PF12329.3 gi|345007346|ref|YP_004810198.1| - 0.23 11.2 11.8 0.62 9.9 8.2 1.7 1 0 0 1 1 1 0 TATA element modulatory factor 1 DNA binding UPF0449 PF15136.1 gi|345007346|ref|YP_004810198.1| - 0.23 11.6 10.4 0.31 11.2 3.2 2.6 2 0 0 2 2 2 0 Uncharacterised protein family UPF0449 DUF3186 PF11382.3 gi|345007346|ref|YP_004810198.1| - 0.26 10.4 0.9 0.4 9.7 0.7 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3186) HSBP1 PF06825.7 gi|345007346|ref|YP_004810198.1| - 0.31 10.6 4.9 2.2 7.9 1.2 2.4 2 0 0 2 2 2 0 Heat shock factor binding protein 1 Fzo_mitofusin PF04799.8 gi|345007346|ref|YP_004810198.1| - 0.67 9.3 2.6 1.2 8.4 1.8 1.3 1 0 0 1 1 1 0 fzo-like conserved region V_ATPase_I PF01496.14 gi|345007346|ref|YP_004810198.1| - 0.7 7.6 4.2 1 7.1 2.9 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family Synaptobrevin PF00957.16 gi|345007346|ref|YP_004810198.1| - 0.96 9.1 3.2 1.9 8.1 2.2 1.4 1 0 0 1 1 1 0 Synaptobrevin Mnd1 PF03962.10 gi|345007346|ref|YP_004810198.1| - 1.3 8.6 8.4 0.9 9.1 4.4 1.7 2 0 0 2 2 2 0 Mnd1 family TMPIT PF07851.8 gi|345007346|ref|YP_004810198.1| - 1.3 8.0 2.9 2.5 7.0 2.0 1.4 1 0 0 1 1 1 0 TMPIT-like protein DUF3450 PF11932.3 gi|345007346|ref|YP_004810198.1| - 1.5 8.0 11.0 0.3 10.3 4.8 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF3450) XhlA PF10779.4 gi|345007346|ref|YP_004810198.1| - 1.6 8.7 10.1 3.7 7.5 7.0 1.6 1 0 0 1 1 1 0 Haemolysin XhlA DUF972 PF06156.8 gi|345007346|ref|YP_004810198.1| - 2.1 8.7 8.7 1 9.7 4.2 1.8 2 0 0 2 2 1 0 Protein of unknown function (DUF972) FemAB PF02388.11 gi|345007346|ref|YP_004810198.1| - 2.2 6.9 4.6 3.3 6.2 3.2 1.1 1 0 0 1 1 1 0 FemAB family DUF3552 PF12072.3 gi|345007346|ref|YP_004810198.1| - 2.4 7.3 20.3 0.03 13.5 7.9 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF3552) Daxx PF03344.10 gi|345007346|ref|YP_004810198.1| - 4.3 5.6 13.9 6.4 5.1 9.7 1.1 1 0 0 1 1 1 0 Daxx Family Spc7 PF08317.6 gi|345007346|ref|YP_004810198.1| - 4.8 5.7 13.1 0.22 10.1 5.0 1.6 2 0 0 2 2 2 0 Spc7 kinetochore protein Sulfatase PF00884.18 gi|345007347|ref|YP_004810199.1| - 0.00025 20.3 1.0 0.0003 20.0 0.7 1.2 1 0 0 1 1 1 1 Sulfatase PglZ PF08665.7 gi|345007347|ref|YP_004810199.1| - 0.031 13.9 0.4 0.26 10.9 0.0 2.3 2 0 0 2 2 2 0 PglZ domain CARDB PF07705.6 gi|345007348|ref|YP_004810200.1| - 1.8e-05 24.7 1.7 1.8e-05 24.7 1.2 2.6 2 1 0 2 2 2 1 CARDB Arv1 PF04161.8 gi|345007349|ref|YP_004810201.1| - 2.5 7.9 9.3 0.66 9.8 2.4 2.7 3 0 0 3 3 3 0 Arv1-like family Glycos_transf_1 PF00534.15 gi|345007350|ref|YP_004810202.1| - 6.3e-31 107.0 0.0 9.5e-31 106.5 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|345007350|ref|YP_004810202.1| - 9.1e-18 64.7 0.0 1.8e-17 63.7 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|345007350|ref|YP_004810202.1| - 5.5e-14 52.6 0.0 3.4e-13 50.0 0.0 2.1 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.1 gi|345007350|ref|YP_004810202.1| - 2.9e-10 40.1 0.0 4.5e-10 39.5 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_2 PF13477.1 gi|345007350|ref|YP_004810202.1| - 4.2e-05 23.4 0.0 6.6e-05 22.7 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glyco_trans_1_2 PF13524.1 gi|345007350|ref|YP_004810202.1| - 0.00021 21.5 0.0 0.00088 19.4 0.0 2.0 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glycos_transf_2 PF00535.21 gi|345007351|ref|YP_004810203.1| - 9.7e-30 103.4 0.2 1.5e-29 102.8 0.1 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|345007351|ref|YP_004810203.1| - 1.5e-24 87.1 0.0 2.3e-24 86.4 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.4 gi|345007351|ref|YP_004810203.1| - 4.6e-15 55.4 0.1 2.9e-09 36.4 0.0 2.1 2 0 0 2 2 2 2 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.1 gi|345007351|ref|YP_004810203.1| - 5.9e-12 45.6 0.8 1.2e-11 44.7 0.6 1.5 1 0 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_transf_21 PF13506.1 gi|345007351|ref|YP_004810203.1| - 4e-10 39.2 0.0 7.3e-10 38.4 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 21 Glyco_tranf_2_5 PF13712.1 gi|345007351|ref|YP_004810203.1| - 5.7e-09 35.5 0.0 3.5e-07 29.6 0.0 2.8 1 1 1 2 2 2 1 Glycosyltransferase like family Glyco_transf_7C PF02709.9 gi|345007351|ref|YP_004810203.1| - 4.8e-07 29.1 0.0 8.5e-07 28.3 0.0 1.4 1 0 0 1 1 1 1 N-terminal domain of galactosyltransferase Glyco_tranf_2_4 PF13704.1 gi|345007351|ref|YP_004810203.1| - 0.034 14.4 0.0 0.1 12.9 0.0 1.9 1 0 0 1 1 1 0 Glycosyl transferase family 2 GlcNAc PF11397.3 gi|345007351|ref|YP_004810203.1| - 0.087 11.9 0.1 0.11 11.5 0.0 1.2 1 0 0 1 1 1 0 Glycosyltransferase (GlcNAc) Glycos_transf_1 PF00534.15 gi|345007352|ref|YP_004810204.1| - 1.3e-37 128.8 0.0 1.8e-37 128.3 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|345007352|ref|YP_004810204.1| - 7.1e-20 71.5 0.0 1.4e-19 70.6 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|345007352|ref|YP_004810204.1| - 5e-13 49.5 0.1 1.3e-12 48.1 0.1 1.8 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.1 gi|345007352|ref|YP_004810204.1| - 4.8e-06 26.7 0.0 9.5e-06 25.8 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|345007352|ref|YP_004810204.1| - 5.6e-06 26.1 0.0 1.2e-05 25.1 0.0 1.6 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_4_2 PF13477.1 gi|345007352|ref|YP_004810204.1| - 6.5e-06 26.0 0.0 1.3e-05 25.0 0.0 1.5 1 1 0 1 1 1 1 Glycosyl transferase 4-like Glyco_transf_5 PF08323.6 gi|345007352|ref|YP_004810204.1| - 0.024 14.1 0.1 0.06 12.8 0.1 1.7 1 1 0 1 1 1 0 Starch synthase catalytic domain DUF3492 PF11997.3 gi|345007352|ref|YP_004810204.1| - 0.041 13.4 0.1 0.33 10.4 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF3492) DUF1616 PF07760.6 gi|345007353|ref|YP_004810205.1| - 1.7e-52 178.3 3.3 1.9e-52 178.2 2.3 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1616) MscS_TM PF12794.2 gi|345007353|ref|YP_004810205.1| - 0.014 13.9 0.6 0.014 13.9 0.4 1.8 2 0 0 2 2 2 0 Mechanosensitive ion channel inner membrane domain 1 Abi PF02517.11 gi|345007354|ref|YP_004810206.1| - 3.1e-14 52.8 8.2 3.1e-14 52.8 5.7 2.5 2 1 0 2 2 2 1 CAAX protease self-immunity DUF4181 PF13789.1 gi|345007354|ref|YP_004810206.1| - 0.004 17.0 11.2 0.22 11.4 0.0 3.5 2 1 0 3 3 3 3 Domain of unknown function (DUF4181) dTDP_sugar_isom PF00908.12 gi|345007355|ref|YP_004810207.1| - 2.6e-12 46.4 0.0 2.9e-12 46.2 0.0 1.0 1 0 0 1 1 1 1 dTDP-4-dehydrorhamnose 3,5-epimerase FdtA PF05523.6 gi|345007355|ref|YP_004810207.1| - 3e-06 26.7 0.0 4.1e-06 26.3 0.0 1.1 1 0 0 1 1 1 1 WxcM-like, C-terminal Cupin_2 PF07883.6 gi|345007355|ref|YP_004810207.1| - 0.027 13.9 0.1 0.26 10.7 0.1 2.1 1 1 0 1 1 1 0 Cupin domain NTP_transferase PF00483.18 gi|345007356|ref|YP_004810208.1| - 2.1e-55 187.7 0.0 2.6e-55 187.4 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.2 gi|345007356|ref|YP_004810208.1| - 1.4e-09 38.2 0.0 1.9e-09 37.8 0.0 1.3 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep PF00132.19 gi|345007356|ref|YP_004810208.1| - 1.1e-06 27.9 2.9 0.0011 18.3 0.1 3.2 2 1 1 3 3 3 2 Bacterial transferase hexapeptide (six repeats) IspD PF01128.14 gi|345007356|ref|YP_004810208.1| - 0.006 16.1 0.0 0.0099 15.4 0.0 1.3 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase DNA_ligase_ZBD PF03119.11 gi|345007357|ref|YP_004810209.1| - 0.0017 18.0 2.4 0.0034 17.0 1.7 1.6 1 1 0 1 1 1 1 NAD-dependent DNA ligase C4 zinc finger domain IBR PF01485.16 gi|345007357|ref|YP_004810209.1| - 0.0029 17.4 0.3 0.11 12.3 0.0 2.0 1 1 1 2 2 2 2 IBR domain OrfB_Zn_ribbon PF07282.6 gi|345007357|ref|YP_004810209.1| - 0.012 15.2 0.4 0.016 14.8 0.3 1.2 1 0 0 1 1 1 0 Putative transposase DNA-binding domain UPF0547 PF10571.4 gi|345007357|ref|YP_004810209.1| - 0.016 14.8 3.2 0.045 13.4 1.9 2.0 1 1 1 2 2 2 0 Uncharacterised protein family UPF0547 Zn_Tnp_IS1595 PF12760.2 gi|345007357|ref|YP_004810209.1| - 0.021 14.6 0.5 0.11 12.3 0.1 2.0 2 0 0 2 2 2 0 Transposase zinc-ribbon domain zf-tcix PF14952.1 gi|345007357|ref|YP_004810209.1| - 0.026 13.8 0.0 0.05 12.9 0.0 1.4 1 1 0 1 1 1 0 Putative treble-clef, zinc-finger, Zn-binding zf-LITAF-like PF10601.4 gi|345007357|ref|YP_004810209.1| - 0.051 13.4 0.4 0.099 12.5 0.0 1.6 2 0 0 2 2 2 0 LITAF-like zinc ribbon domain RNHCP PF12647.2 gi|345007357|ref|YP_004810209.1| - 0.062 13.1 0.2 0.071 12.9 0.1 1.1 1 0 0 1 1 1 0 RNHCP domain TF_Zn_Ribbon PF08271.7 gi|345007357|ref|YP_004810209.1| - 0.079 12.2 0.1 0.079 12.2 0.1 2.0 2 1 0 2 2 2 0 TFIIB zinc-binding zf-ribbon_3 PF13248.1 gi|345007357|ref|YP_004810209.1| - 0.088 12.0 3.8 0.24 10.6 2.1 2.1 2 1 0 2 2 2 0 zinc-ribbon domain zf-C2H2 PF00096.21 gi|345007357|ref|YP_004810209.1| - 0.13 12.6 0.2 1.8 9.0 0.0 2.1 2 0 0 2 2 2 0 Zinc finger, C2H2 type RmlD_sub_bind PF04321.12 gi|345007358|ref|YP_004810210.1| - 1.4e-72 243.9 0.0 1.6e-72 243.8 0.0 1.0 1 0 0 1 1 1 1 RmlD substrate binding domain Epimerase PF01370.16 gi|345007358|ref|YP_004810210.1| - 2.5e-23 82.7 0.0 3.1e-23 82.4 0.0 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family NAD_binding_4 PF07993.7 gi|345007358|ref|YP_004810210.1| - 1.4e-07 30.7 0.0 3.8e-07 29.2 0.0 1.7 2 0 0 2 2 2 1 Male sterility protein Polysacc_synt_2 PF02719.10 gi|345007358|ref|YP_004810210.1| - 2e-05 23.6 0.0 0.00014 20.9 0.0 2.3 1 1 0 2 2 2 1 Polysaccharide biosynthesis protein NAD_binding_10 PF13460.1 gi|345007358|ref|YP_004810210.1| - 0.002 18.1 0.0 0.0025 17.8 0.0 1.4 1 0 0 1 1 1 1 NADH(P)-binding 3Beta_HSD PF01073.14 gi|345007358|ref|YP_004810210.1| - 0.027 13.1 0.0 0.094 11.4 0.0 1.8 1 1 0 1 1 1 0 3-beta hydroxysteroid dehydrogenase/isomerase family Epimerase PF01370.16 gi|345007359|ref|YP_004810211.1| - 4.3e-67 225.9 0.0 5.6e-67 225.6 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.12 gi|345007359|ref|YP_004810211.1| - 1.6e-25 89.5 0.0 1.9e-25 89.3 0.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain 3Beta_HSD PF01073.14 gi|345007359|ref|YP_004810211.1| - 1.2e-24 86.4 0.0 1.6e-24 86.1 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.10 gi|345007359|ref|YP_004810211.1| - 2.2e-19 69.4 0.0 3.5e-18 65.5 0.0 2.0 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.7 gi|345007359|ref|YP_004810211.1| - 1.7e-17 63.2 0.0 1.3e-16 60.2 0.0 2.0 1 1 0 1 1 1 1 Male sterility protein NAD_binding_10 PF13460.1 gi|345007359|ref|YP_004810211.1| - 3.1e-12 46.8 0.0 5.4e-12 46.0 0.0 1.3 1 0 0 1 1 1 1 NADH(P)-binding adh_short PF00106.20 gi|345007359|ref|YP_004810211.1| - 6.2e-06 26.2 0.9 0.00031 20.7 0.3 2.4 2 0 0 2 2 2 1 short chain dehydrogenase NmrA PF05368.8 gi|345007359|ref|YP_004810211.1| - 8.5e-06 25.1 0.1 1.3e-05 24.6 0.1 1.2 1 0 0 1 1 1 1 NmrA-like family KR PF08659.5 gi|345007359|ref|YP_004810211.1| - 0.0023 17.6 0.4 0.035 13.7 0.2 2.6 1 1 0 1 1 1 1 KR domain Saccharop_dh PF03435.13 gi|345007359|ref|YP_004810211.1| - 0.08 11.9 0.1 0.11 11.4 0.1 1.2 1 0 0 1 1 1 0 Saccharopine dehydrogenase Ldh_1_N PF00056.18 gi|345007359|ref|YP_004810211.1| - 0.12 12.2 0.0 0.21 11.3 0.0 1.4 1 0 0 1 1 1 0 lactate/malate dehydrogenase, NAD binding domain NUDIX PF00293.23 gi|345007360|ref|YP_004810212.1| - 6.5e-11 42.0 0.3 7.7e-11 41.7 0.2 1.1 1 0 0 1 1 1 1 NUDIX domain NUDIX_4 PF14815.1 gi|345007360|ref|YP_004810212.1| - 0.094 12.1 0.0 0.14 11.5 0.0 1.2 1 0 0 1 1 1 0 NUDIX domain DUF4350 PF14258.1 gi|345007362|ref|YP_004810214.1| - 0.0014 18.7 0.0 0.002 18.3 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4350) Imp-YgjV PF10688.4 gi|345007363|ref|YP_004810215.1| - 0.00065 19.1 0.9 0.00076 18.9 0.6 1.0 1 0 0 1 1 1 1 Bacterial inner membrane protein PMT PF02366.13 gi|345007363|ref|YP_004810215.1| - 0.048 13.0 4.1 0.051 12.9 2.9 1.1 1 0 0 1 1 1 0 Dolichyl-phosphate-mannose-protein mannosyltransferase OrfB_Zn_ribbon PF07282.6 gi|345007364|ref|YP_004810216.1| - 1e-23 82.7 0.7 2e-23 81.8 0.5 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.14 gi|345007364|ref|YP_004810216.1| - 2.7e-12 46.6 0.0 4.2e-12 45.9 0.0 1.2 1 0 0 1 1 1 1 Probable transposase DZR PF12773.2 gi|345007364|ref|YP_004810216.1| - 0.012 15.3 2.4 0.032 14.0 1.7 1.6 1 0 0 1 1 1 0 Double zinc ribbon DCAF15_WD40 PF14939.1 gi|345007364|ref|YP_004810216.1| - 0.13 11.6 0.2 0.21 10.9 0.1 1.3 1 0 0 1 1 1 0 DDB1-and CUL4-substrate receptor 15, WD repeat zf-ribbon_3 PF13248.1 gi|345007364|ref|YP_004810216.1| - 0.31 10.3 2.1 10 5.4 0.1 2.5 2 0 0 2 2 2 0 zinc-ribbon domain DUF457 PF04307.9 gi|345007365|ref|YP_004810217.1| - 1.6e-09 37.2 11.3 2.4e-09 36.7 7.9 1.4 1 1 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) DDE_Tnp_1 PF01609.16 gi|345007366|ref|YP_004810218.1| - 0.01 15.4 0.1 0.044 13.3 0.1 2.0 1 1 0 1 1 1 0 Transposase DDE domain RNA_POL_M_15KD PF02150.11 gi|345007367|ref|YP_004810219.1| - 0.077 12.6 1.5 0.17 11.6 1.1 1.6 1 0 0 1 1 1 0 RNA polymerases M/15 Kd subunit VWA PF00092.23 gi|345007368|ref|YP_004810220.1| - 1.8e-10 40.8 0.3 2.3e-10 40.4 0.2 1.2 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA_2 PF13519.1 gi|345007368|ref|YP_004810220.1| - 1.5e-08 34.9 3.8 1.6e-08 34.8 2.1 1.5 1 1 0 1 1 1 1 von Willebrand factor type A domain vWA-TerF-like PF10138.4 gi|345007368|ref|YP_004810220.1| - 0.0037 17.1 1.6 0.093 12.5 1.1 2.1 1 1 0 1 1 1 1 vWA found in TerF C terminus VWA_CoxE PF05762.9 gi|345007368|ref|YP_004810220.1| - 0.025 13.7 0.1 0.041 13.0 0.0 1.4 1 0 0 1 1 1 0 VWA domain containing CoxE-like protein DUF2201 PF09967.4 gi|345007368|ref|YP_004810220.1| - 0.041 13.8 0.6 0.69 9.9 0.4 2.3 1 1 0 1 1 1 0 VWA-like domain (DUF2201) Lactamase_B_2 PF12706.2 gi|345007369|ref|YP_004810221.1| - 4.9e-11 42.5 2.4 4.9e-11 42.5 1.6 2.2 2 0 0 2 2 2 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|345007369|ref|YP_004810221.1| - 2e-07 30.8 9.2 5e-07 29.5 6.4 1.7 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily SDA1 PF05285.7 gi|345007369|ref|YP_004810221.1| - 4.3 6.5 17.7 6 6.0 12.3 1.1 1 0 0 1 1 1 0 SDA1 CDK5_activator PF03261.10 gi|345007369|ref|YP_004810221.1| - 5.8 6.1 6.0 9.9 5.3 4.1 1.2 1 0 0 1 1 1 0 Cyclin-dependent kinase 5 activator protein Rrf2 PF02082.15 gi|345007370|ref|YP_004810222.1| - 0.00087 19.3 0.0 0.0012 18.9 0.0 1.1 1 0 0 1 1 1 1 Transcriptional regulator GntR PF00392.16 gi|345007370|ref|YP_004810222.1| - 0.087 12.2 0.0 0.12 11.8 0.0 1.2 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_Crp_2 PF13545.1 gi|345007370|ref|YP_004810222.1| - 0.087 12.6 0.0 0.14 11.9 0.0 1.3 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain AAA_12 PF13087.1 gi|345007371|ref|YP_004810223.1| - 1.4e-49 168.2 0.4 2.8e-49 167.2 0.0 1.7 2 0 0 2 2 2 1 AAA domain AAA_11 PF13086.1 gi|345007371|ref|YP_004810223.1| - 3e-32 112.0 2.6 1.1e-15 57.8 0.1 2.8 2 1 1 3 3 3 2 AAA domain AAA_30 PF13604.1 gi|345007371|ref|YP_004810223.1| - 6.8e-14 51.8 0.0 1.8e-13 50.5 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|345007371|ref|YP_004810223.1| - 1.2e-08 34.5 0.1 2.7e-08 33.4 0.1 1.6 1 0 0 1 1 1 1 Part of AAA domain Viral_helicase1 PF01443.13 gi|345007371|ref|YP_004810223.1| - 1.4e-08 34.5 2.9 0.0071 15.9 0.0 3.6 4 0 0 4 4 4 3 Viral (Superfamily 1) RNA helicase ABC_tran PF00005.22 gi|345007371|ref|YP_004810223.1| - 7.2e-06 26.3 0.0 2.9e-05 24.4 0.0 2.1 1 0 0 1 1 1 1 ABC transporter AAA PF00004.24 gi|345007371|ref|YP_004810223.1| - 0.00013 22.1 0.8 0.0022 18.1 0.0 3.0 3 1 0 3 3 2 1 ATPase family associated with various cellular activities (AAA) UvrD_C PF13361.1 gi|345007371|ref|YP_004810223.1| - 0.00015 21.3 1.1 0.12 11.7 0.0 2.8 2 1 1 3 3 3 2 UvrD-like helicase C-terminal domain ResIII PF04851.10 gi|345007371|ref|YP_004810223.1| - 0.00016 21.5 1.3 0.00055 19.8 0.0 2.6 3 1 0 3 3 3 1 Type III restriction enzyme, res subunit AAA_22 PF13401.1 gi|345007371|ref|YP_004810223.1| - 0.00022 21.3 0.2 0.0033 17.5 0.0 2.8 3 0 0 3 3 2 1 AAA domain UvrD_C_2 PF13538.1 gi|345007371|ref|YP_004810223.1| - 0.00032 20.7 0.0 0.00091 19.3 0.0 1.8 1 0 0 1 1 1 1 UvrD-like helicase C-terminal domain AAA_16 PF13191.1 gi|345007371|ref|YP_004810223.1| - 0.00032 20.7 0.0 0.00085 19.3 0.0 1.7 1 0 0 1 1 1 1 AAA ATPase domain DUF2075 PF09848.4 gi|345007371|ref|YP_004810223.1| - 0.0026 16.8 0.8 0.026 13.5 0.0 2.6 2 1 0 2 2 2 1 Uncharacterized conserved protein (DUF2075) AAA_17 PF13207.1 gi|345007371|ref|YP_004810223.1| - 0.0074 17.1 0.0 0.02 15.7 0.0 1.8 1 0 0 1 1 1 1 AAA domain IstB_IS21 PF01695.12 gi|345007371|ref|YP_004810223.1| - 0.011 15.1 0.0 0.03 13.7 0.0 1.7 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_25 PF13481.1 gi|345007371|ref|YP_004810223.1| - 0.012 14.9 0.0 0.034 13.5 0.0 1.7 1 0 0 1 1 1 0 AAA domain Helicase_RecD PF05127.9 gi|345007371|ref|YP_004810223.1| - 0.013 15.1 0.1 0.073 12.7 0.1 2.3 1 1 0 1 1 1 0 Helicase AAA_28 PF13521.1 gi|345007371|ref|YP_004810223.1| - 0.062 13.2 0.0 0.15 11.9 0.0 1.7 1 0 0 1 1 1 0 AAA domain RNA_helicase PF00910.17 gi|345007371|ref|YP_004810223.1| - 0.071 13.2 0.0 0.31 11.2 0.0 2.1 2 0 0 2 2 2 0 RNA helicase AAA_5 PF07728.9 gi|345007371|ref|YP_004810223.1| - 0.11 12.1 0.0 0.41 10.3 0.0 1.9 2 0 0 2 2 1 0 AAA domain (dynein-related subfamily) PIF1 PF05970.9 gi|345007371|ref|YP_004810223.1| - 0.13 11.1 0.0 1.3 7.8 0.0 2.2 2 0 0 2 2 2 0 PIF1-like helicase DDE_Tnp_1 PF01609.16 gi|345007372|ref|YP_004810224.1| - 0.01 15.4 0.1 0.044 13.3 0.1 2.0 1 1 0 1 1 1 0 Transposase DDE domain PMT_2 PF13231.1 gi|345007373|ref|YP_004810225.1| - 1.5e-09 37.9 16.2 1.5e-09 37.9 11.2 2.0 2 0 0 2 2 2 1 Dolichyl-phosphate-mannose-protein mannosyltransferase PTPS_related PF10131.4 gi|345007373|ref|YP_004810225.1| - 1.6e-05 23.3 16.0 1.6e-05 23.3 11.1 1.6 2 0 0 2 2 2 1 6-pyruvoyl-tetrahydropterin synthase related domain; membrane protein MerC PF03203.9 gi|345007373|ref|YP_004810225.1| - 9.4 6.6 13.2 0.71 10.2 2.8 2.7 2 1 1 3 3 3 0 MerC mercury resistance protein Dpy19 PF10034.4 gi|345007375|ref|YP_004810227.1| - 0.012 13.8 0.0 0.014 13.6 0.0 1.2 1 0 0 1 1 1 0 Q-cell neuroblast polarisation Glycos_transf_2 PF00535.21 gi|345007376|ref|YP_004810228.1| - 7.2e-24 84.3 0.0 1.4e-23 83.4 0.0 1.5 2 0 0 2 2 2 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|345007376|ref|YP_004810228.1| - 9.1e-07 28.8 0.3 1.2e-05 25.2 0.0 2.1 2 0 0 2 2 2 1 Glycosyltransferase like family 2 NTP_transf_3 PF12804.2 gi|345007376|ref|YP_004810228.1| - 0.002 18.2 0.8 0.12 12.4 0.0 2.3 2 0 0 2 2 2 1 MobA-like NTP transferase domain Glyco_tranf_2_4 PF13704.1 gi|345007376|ref|YP_004810228.1| - 0.0028 17.9 0.0 0.014 15.6 0.0 2.0 2 0 0 2 2 2 1 Glycosyl transferase family 2 Pec_lyase PF09492.5 gi|345007378|ref|YP_004810230.1| - 0.0099 15.0 0.0 0.043 12.9 0.0 1.9 2 0 0 2 2 2 1 Pectic acid lyase Glyco_tranf_2_3 PF13641.1 gi|345007379|ref|YP_004810231.1| - 7.1e-26 91.4 0.5 1.1e-25 90.7 0.4 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glycos_transf_2 PF00535.21 gi|345007379|ref|YP_004810231.1| - 2.6e-19 69.5 0.0 3.8e-19 69.0 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_trans_2_3 PF13632.1 gi|345007379|ref|YP_004810231.1| - 1.1e-11 44.8 0.7 1.8e-11 44.1 0.5 1.5 1 0 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_transf_21 PF13506.1 gi|345007379|ref|YP_004810231.1| - 6.5e-09 35.3 0.0 1.2e-08 34.4 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 21 Glyco_tranf_2_2 PF10111.4 gi|345007379|ref|YP_004810231.1| - 2e-05 23.8 0.0 0.00014 21.0 0.0 1.9 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glycos_transf_1 PF00534.15 gi|345007380|ref|YP_004810232.1| - 1e-25 90.1 0.0 2.6e-25 88.8 0.0 1.6 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|345007380|ref|YP_004810232.1| - 5.7e-14 52.4 0.0 2.1e-13 50.5 0.0 1.8 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|345007380|ref|YP_004810232.1| - 6.2e-12 45.9 0.3 6e-11 42.7 0.1 2.3 2 1 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.1 gi|345007380|ref|YP_004810232.1| - 4.6e-07 29.7 0.3 1.1e-06 28.4 0.2 1.7 1 1 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_2 PF13477.1 gi|345007380|ref|YP_004810232.1| - 7.1e-05 22.6 0.2 0.0011 18.8 0.1 2.4 2 0 0 2 2 2 1 Glycosyl transferase 4-like Glyco_trans_1_2 PF13524.1 gi|345007380|ref|YP_004810232.1| - 0.0071 16.5 0.0 0.015 15.5 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Polysacc_synt_C PF14667.1 gi|345007381|ref|YP_004810233.1| - 2e-21 76.3 20.9 2e-21 76.3 14.5 3.7 2 1 1 3 3 3 1 Polysaccharide biosynthesis C-terminal domain Polysacc_synt PF01943.12 gi|345007381|ref|YP_004810233.1| - 8.3e-19 67.8 24.0 8.3e-19 67.8 16.7 2.8 1 1 2 3 3 3 2 Polysaccharide biosynthesis protein MVIN PF03023.9 gi|345007381|ref|YP_004810233.1| - 1.9e-13 49.6 23.7 1.9e-13 49.6 16.4 2.1 2 1 0 2 2 2 1 MviN-like protein MatE PF01554.13 gi|345007381|ref|YP_004810233.1| - 1.6e-10 40.8 5.7 1.6e-10 40.8 4.0 4.3 3 3 1 4 4 4 1 MatE Polysacc_synt_3 PF13440.1 gi|345007381|ref|YP_004810233.1| - 1.4e-09 37.8 24.6 1.4e-09 37.8 17.1 3.0 2 1 1 3 3 3 2 Polysaccharide biosynthesis protein DUF3975 PF13126.1 gi|345007381|ref|YP_004810233.1| - 0.14 12.3 0.2 0.14 12.3 0.1 4.0 4 1 0 4 4 4 0 Protein of unknown function (DUF3975) Glycophorin_A PF01102.13 gi|345007381|ref|YP_004810233.1| - 0.82 9.4 4.5 0.87 9.3 0.1 2.5 2 0 0 2 2 2 0 Glycophorin A DUF3512 PF12024.3 gi|345007382|ref|YP_004810234.1| - 0.057 12.6 0.4 0.64 9.2 0.1 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF3512) DDE_Tnp_IS66 PF03050.9 gi|345007383|ref|YP_004810235.1| - 3e-53 180.8 0.2 3e-53 180.8 0.1 1.8 2 0 0 2 2 2 1 Transposase IS66 family Atg14 PF10186.4 gi|345007383|ref|YP_004810235.1| - 0.00026 20.0 1.8 0.00055 18.9 1.3 1.5 1 0 0 1 1 1 1 UV radiation resistance protein and autophagy-related subunit 14 SlyX PF04102.7 gi|345007383|ref|YP_004810235.1| - 0.00064 20.0 4.5 0.0017 18.6 3.1 1.8 1 0 0 1 1 1 1 SlyX DASH_Spc34 PF08657.5 gi|345007383|ref|YP_004810235.1| - 0.0012 18.5 3.2 0.0026 17.4 2.2 1.6 1 0 0 1 1 1 1 DASH complex subunit Spc34 IncA PF04156.9 gi|345007383|ref|YP_004810235.1| - 0.0033 17.0 4.1 0.0033 17.0 2.9 1.7 2 0 0 2 2 1 1 IncA protein Fmp27_WPPW PF10359.4 gi|345007383|ref|YP_004810235.1| - 0.0039 15.6 2.7 0.0055 15.1 1.9 1.1 1 0 0 1 1 1 1 RNA pol II promoter Fmp27 protein domain DUF869 PF05911.6 gi|345007383|ref|YP_004810235.1| - 0.0053 15.0 1.3 0.0072 14.6 0.9 1.1 1 0 0 1 1 1 1 Plant protein of unknown function (DUF869) ATG16 PF08614.6 gi|345007383|ref|YP_004810235.1| - 0.0068 16.2 8.4 0.015 15.1 5.8 1.5 1 0 0 1 1 1 1 Autophagy protein 16 (ATG16) DUF16 PF01519.11 gi|345007383|ref|YP_004810235.1| - 0.016 15.4 3.3 0.036 14.2 2.3 1.5 1 0 0 1 1 1 0 Protein of unknown function DUF16 DUF3584 PF12128.3 gi|345007383|ref|YP_004810235.1| - 0.022 12.1 5.7 0.032 11.5 4.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) DDE_Tnp_IS240 PF13610.1 gi|345007383|ref|YP_004810235.1| - 0.042 13.8 3.6 0.52 10.2 0.1 2.6 2 1 0 2 2 2 0 DDE domain Exonuc_VII_L PF02601.10 gi|345007383|ref|YP_004810235.1| - 0.099 11.8 1.2 0.17 11.0 0.8 1.3 1 0 0 1 1 1 0 Exonuclease VII, large subunit DUF4446 PF14584.1 gi|345007383|ref|YP_004810235.1| - 0.1 12.4 2.7 0.2 11.4 1.9 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF4446) AAA_13 PF13166.1 gi|345007383|ref|YP_004810235.1| - 0.11 10.8 4.6 0.17 10.2 3.2 1.1 1 0 0 1 1 1 0 AAA domain DUF1664 PF07889.7 gi|345007383|ref|YP_004810235.1| - 0.12 12.2 2.1 0.21 11.3 1.5 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1664) AAA_23 PF13476.1 gi|345007383|ref|YP_004810235.1| - 0.12 12.6 6.7 0.24 11.7 4.6 1.4 1 0 0 1 1 1 0 AAA domain TMF_DNA_bd PF12329.3 gi|345007383|ref|YP_004810235.1| - 0.23 11.2 11.8 0.62 9.9 8.2 1.7 1 0 0 1 1 1 0 TATA element modulatory factor 1 DNA binding UPF0449 PF15136.1 gi|345007383|ref|YP_004810235.1| - 0.23 11.6 10.4 0.31 11.2 3.2 2.6 2 0 0 2 2 2 0 Uncharacterised protein family UPF0449 DUF3186 PF11382.3 gi|345007383|ref|YP_004810235.1| - 0.26 10.4 0.9 0.4 9.7 0.7 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3186) HSBP1 PF06825.7 gi|345007383|ref|YP_004810235.1| - 0.31 10.6 4.9 2.2 7.9 1.2 2.4 2 0 0 2 2 2 0 Heat shock factor binding protein 1 Fzo_mitofusin PF04799.8 gi|345007383|ref|YP_004810235.1| - 0.67 9.3 2.6 1.2 8.4 1.8 1.3 1 0 0 1 1 1 0 fzo-like conserved region V_ATPase_I PF01496.14 gi|345007383|ref|YP_004810235.1| - 0.7 7.6 4.2 1 7.1 2.9 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family Synaptobrevin PF00957.16 gi|345007383|ref|YP_004810235.1| - 0.96 9.1 3.2 1.9 8.1 2.2 1.4 1 0 0 1 1 1 0 Synaptobrevin Mnd1 PF03962.10 gi|345007383|ref|YP_004810235.1| - 1.3 8.6 8.4 0.9 9.1 4.4 1.7 2 0 0 2 2 2 0 Mnd1 family TMPIT PF07851.8 gi|345007383|ref|YP_004810235.1| - 1.3 8.0 2.9 2.5 7.0 2.0 1.4 1 0 0 1 1 1 0 TMPIT-like protein DUF3450 PF11932.3 gi|345007383|ref|YP_004810235.1| - 1.5 8.0 11.0 0.3 10.3 4.8 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF3450) XhlA PF10779.4 gi|345007383|ref|YP_004810235.1| - 1.6 8.7 10.1 3.7 7.5 7.0 1.6 1 0 0 1 1 1 0 Haemolysin XhlA DUF972 PF06156.8 gi|345007383|ref|YP_004810235.1| - 2.1 8.7 8.7 1 9.7 4.2 1.8 2 0 0 2 2 1 0 Protein of unknown function (DUF972) FemAB PF02388.11 gi|345007383|ref|YP_004810235.1| - 2.2 6.9 4.6 3.3 6.2 3.2 1.1 1 0 0 1 1 1 0 FemAB family DUF3552 PF12072.3 gi|345007383|ref|YP_004810235.1| - 2.4 7.3 20.3 0.03 13.5 7.9 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF3552) Daxx PF03344.10 gi|345007383|ref|YP_004810235.1| - 4.3 5.6 13.9 6.4 5.1 9.7 1.1 1 0 0 1 1 1 0 Daxx Family Spc7 PF08317.6 gi|345007383|ref|YP_004810235.1| - 4.8 5.7 13.1 0.22 10.1 5.0 1.6 2 0 0 2 2 2 0 Spc7 kinetochore protein bPH_2 PF03703.9 gi|345007384|ref|YP_004810236.1| - 7.2e-18 64.3 0.1 1.1e-17 63.8 0.1 1.3 1 0 0 1 1 1 1 Bacterial PH domain DUF2975 PF11188.3 gi|345007384|ref|YP_004810236.1| - 0.86 9.3 4.4 1.3 8.7 3.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2975) DUF543 PF04418.7 gi|345007384|ref|YP_004810236.1| - 1.1 9.3 4.6 11 6.0 1.6 2.6 2 1 0 2 2 2 0 Domain of unknown function (DUF543) bPH_2 PF03703.9 gi|345007385|ref|YP_004810237.1| - 7.3e-50 166.9 5.2 1.9e-21 75.8 0.1 3.2 3 0 0 3 3 3 3 Bacterial PH domain bPH_4 PF06713.6 gi|345007385|ref|YP_004810237.1| - 0.0089 15.8 0.0 0.44 10.4 0.0 2.8 3 0 0 3 3 3 1 Bacterial PH domain DUF1469 PF07332.6 gi|345007385|ref|YP_004810237.1| - 0.081 12.6 0.3 0.081 12.6 0.2 3.1 3 1 0 3 3 3 0 Protein of unknown function (DUF1469) bPH_5 PF10882.3 gi|345007385|ref|YP_004810237.1| - 0.082 12.7 0.0 2 8.2 0.0 2.7 3 0 0 3 3 3 0 Bacterial PH domain Hepsin-SRCR PF09272.5 gi|345007385|ref|YP_004810237.1| - 0.12 12.5 0.0 1.1 9.5 0.0 2.2 2 0 0 2 2 2 0 Hepsin, SRCR DUF2207 PF09972.4 gi|345007385|ref|YP_004810237.1| - 4.8 5.6 4.7 1.3 7.4 0.0 2.2 3 0 0 3 3 3 0 Predicted membrane protein (DUF2207) Cdc6_C PF09079.6 gi|345007386|ref|YP_004810238.1| - 7.8e-18 63.9 0.1 1.7e-17 62.8 0.0 1.5 1 0 0 1 1 1 1 CDC6, C terminal AAA_22 PF13401.1 gi|345007386|ref|YP_004810238.1| - 2.9e-08 33.9 0.1 8.7e-08 32.3 0.0 1.8 2 0 0 2 2 2 1 AAA domain NACHT PF05729.7 gi|345007386|ref|YP_004810238.1| - 3.8e-06 26.6 0.0 7.6e-06 25.6 0.0 1.5 1 0 0 1 1 1 1 NACHT domain AAA_16 PF13191.1 gi|345007386|ref|YP_004810238.1| - 8.4e-05 22.6 2.2 0.0011 18.9 0.1 3.1 2 1 0 2 2 2 1 AAA ATPase domain AAA PF00004.24 gi|345007386|ref|YP_004810238.1| - 0.00031 20.9 0.0 0.00072 19.7 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_32 PF13654.1 gi|345007386|ref|YP_004810238.1| - 0.068 11.8 0.3 1.4 7.5 0.2 2.0 2 0 0 2 2 2 0 AAA domain GMC_oxred_C PF05199.8 gi|345007388|ref|YP_004810240.1| - 2.8e-22 79.5 0.2 7.7e-22 78.1 0.1 1.8 1 0 0 1 1 1 1 GMC oxidoreductase DAO PF01266.19 gi|345007388|ref|YP_004810240.1| - 1.4e-14 53.7 0.0 2.5e-09 36.4 0.0 2.6 3 0 0 3 3 3 2 FAD dependent oxidoreductase GMC_oxred_N PF00732.14 gi|345007388|ref|YP_004810240.1| - 1e-13 51.1 0.0 1.4e-13 50.6 0.0 1.2 1 0 0 1 1 1 1 GMC oxidoreductase FAD_binding_3 PF01494.14 gi|345007388|ref|YP_004810240.1| - 2.6e-09 36.6 0.5 3.9e-06 26.1 0.0 2.2 2 0 0 2 2 2 2 FAD binding domain FAD_binding_2 PF00890.19 gi|345007388|ref|YP_004810240.1| - 4.3e-08 32.4 0.1 6.5e-05 21.9 0.0 2.2 2 0 0 2 2 2 2 FAD binding domain NAD_binding_8 PF13450.1 gi|345007388|ref|YP_004810240.1| - 2e-07 30.9 0.1 4.6e-07 29.7 0.1 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.9 gi|345007388|ref|YP_004810240.1| - 3.3e-06 25.8 0.1 3e-05 22.6 0.1 2.0 2 0 0 2 2 2 1 HI0933-like protein Pyr_redox_2 PF07992.9 gi|345007388|ref|YP_004810240.1| - 8.5e-06 25.7 0.0 0.00046 20.1 0.0 2.3 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.12 gi|345007388|ref|YP_004810240.1| - 0.00013 21.2 0.0 0.00023 20.3 0.0 1.3 1 0 0 1 1 1 1 Thi4 family Lycopene_cycl PF05834.7 gi|345007388|ref|YP_004810240.1| - 0.00023 20.2 0.0 0.00032 19.7 0.0 1.2 1 0 0 1 1 1 1 Lycopene cyclase protein FAD_oxidored PF12831.2 gi|345007388|ref|YP_004810240.1| - 0.00024 20.3 0.6 0.0011 18.1 0.6 2.0 2 0 0 2 2 2 1 FAD dependent oxidoreductase NAD_binding_10 PF13460.1 gi|345007388|ref|YP_004810240.1| - 0.00059 19.8 0.0 0.26 11.2 0.0 2.3 2 0 0 2 2 2 1 NADH(P)-binding Pyr_redox PF00070.22 gi|345007388|ref|YP_004810240.1| - 0.0011 19.3 0.0 0.0053 17.1 0.0 2.1 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.17 gi|345007388|ref|YP_004810240.1| - 0.0036 16.2 0.0 0.0062 15.4 0.0 1.3 1 0 0 1 1 1 1 Glucose inhibited division protein A ApbA PF02558.11 gi|345007388|ref|YP_004810240.1| - 0.007 15.8 0.0 0.014 14.7 0.0 1.5 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA UDPG_MGDP_dh_N PF03721.9 gi|345007388|ref|YP_004810240.1| - 0.016 14.5 0.1 0.03 13.6 0.0 1.4 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 3HCDH_N PF02737.13 gi|345007388|ref|YP_004810240.1| - 0.029 14.0 0.0 0.046 13.3 0.0 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Pyr_redox_3 PF13738.1 gi|345007388|ref|YP_004810240.1| - 0.029 14.4 0.0 0.088 12.8 0.0 1.9 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.1 gi|345007388|ref|YP_004810240.1| - 0.1 12.3 0.0 0.23 11.2 0.0 1.6 1 0 0 1 1 1 0 FAD-NAD(P)-binding Shikimate_DH PF01488.15 gi|345007388|ref|YP_004810240.1| - 0.11 12.5 0.0 0.29 11.2 0.0 1.6 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase Trp_halogenase PF04820.9 gi|345007388|ref|YP_004810240.1| - 0.17 10.4 0.2 0.29 9.7 0.0 1.4 2 0 0 2 2 2 0 Tryptophan halogenase Gluconate_2-dh3 PF13618.1 gi|345007389|ref|YP_004810241.1| - 8.4e-08 32.4 0.0 1.5e-07 31.5 0.0 1.5 1 0 0 1 1 1 1 Gluconate 2-dehydrogenase subunit 3 TAT_signal PF10518.4 gi|345007389|ref|YP_004810241.1| - 8.2e-05 22.3 2.8 0.011 15.6 0.9 2.7 2 0 0 2 2 2 2 TAT (twin-arginine translocation) pathway signal sequence DUF4129 PF13559.1 gi|345007389|ref|YP_004810241.1| - 0.2 11.6 3.5 1.3 9.0 0.5 3.3 1 1 1 2 2 2 0 Domain of unknown function (DUF4129) PadR PF03551.9 gi|345007393|ref|YP_004810245.1| - 2.3e-09 36.8 0.0 2.8e-09 36.6 0.0 1.1 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family FUR PF01475.14 gi|345007393|ref|YP_004810245.1| - 0.00049 20.0 0.0 0.00061 19.7 0.0 1.1 1 0 0 1 1 1 1 Ferric uptake regulator family HTH_27 PF13463.1 gi|345007393|ref|YP_004810245.1| - 0.078 13.3 0.0 0.095 13.0 0.0 1.1 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_45 PF14947.1 gi|345007393|ref|YP_004810245.1| - 0.12 12.1 0.0 0.2 11.5 0.0 1.3 1 1 0 1 1 1 0 Winged helix-turn-helix HTH_20 PF12840.2 gi|345007395|ref|YP_004810247.1| - 0.0014 18.3 0.8 0.17 11.7 0.0 2.6 3 0 0 3 3 3 2 Helix-turn-helix domain DUF1360 PF07098.6 gi|345007395|ref|YP_004810247.1| - 0.17 11.5 2.2 0.35 10.6 1.5 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1360) RskA PF10099.4 gi|345007395|ref|YP_004810247.1| - 5.9 6.5 6.9 39 3.9 4.7 2.3 1 1 0 1 1 1 0 Anti-sigma-K factor rskA HTH_29 PF13551.1 gi|345007396|ref|YP_004810248.1| - 4.7e-24 84.6 1.4 3.1e-23 82.0 0.2 2.2 2 0 0 2 2 2 1 Winged helix-turn helix DDE_3 PF13358.1 gi|345007396|ref|YP_004810248.1| - 7.6e-18 64.6 0.2 1.6e-17 63.6 0.0 1.6 2 0 0 2 2 2 1 DDE superfamily endonuclease HTH_23 PF13384.1 gi|345007396|ref|YP_004810248.1| - 2.5e-12 46.0 1.3 4e-11 42.1 0.2 2.9 3 0 0 3 3 3 1 Homeodomain-like domain HTH_32 PF13565.1 gi|345007396|ref|YP_004810248.1| - 6e-12 46.1 0.5 2.2e-11 44.3 0.3 2.0 1 0 0 1 1 1 1 Homeodomain-like domain HTH_28 PF13518.1 gi|345007396|ref|YP_004810248.1| - 4.6e-05 23.3 0.2 0.00029 20.7 0.0 2.2 2 0 0 2 2 2 1 Helix-turn-helix domain rve PF00665.21 gi|345007396|ref|YP_004810248.1| - 0.014 15.4 0.0 0.026 14.6 0.0 1.5 1 0 0 1 1 1 0 Integrase core domain HTH_Tnp_Tc3_2 PF01498.13 gi|345007396|ref|YP_004810248.1| - 0.083 12.9 0.3 0.21 11.6 0.0 1.8 2 0 0 2 2 2 0 Transposase HTH_11 PF08279.7 gi|345007397|ref|YP_004810249.1| - 0.034 13.7 0.1 0.073 12.7 0.1 1.6 1 0 0 1 1 1 0 HTH domain TFIIE_beta PF02186.10 gi|345007397|ref|YP_004810249.1| - 0.12 12.3 0.0 0.37 10.8 0.0 1.7 2 0 0 2 2 2 0 TFIIE beta subunit core domain DDE_Tnp_1 PF01609.16 gi|345007398|ref|YP_004810250.1| - 0.0083 15.6 0.0 0.035 13.6 0.0 2.0 1 1 0 1 1 1 1 Transposase DDE domain DUF4315 PF14193.1 gi|345007399|ref|YP_004810251.1| - 0.094 12.6 0.0 0.16 11.9 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4315) ThiF PF00899.16 gi|345007400|ref|YP_004810252.1| - 2.2e-21 76.0 0.2 3.6e-21 75.4 0.1 1.3 1 0 0 1 1 1 1 ThiF family 2-Hacid_dh_C PF02826.14 gi|345007400|ref|YP_004810252.1| - 0.016 14.3 0.1 0.034 13.2 0.0 1.5 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ApbA PF02558.11 gi|345007400|ref|YP_004810252.1| - 0.017 14.5 0.1 0.028 13.8 0.0 1.3 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA 3HCDH_N PF02737.13 gi|345007400|ref|YP_004810252.1| - 0.095 12.3 0.0 0.17 11.5 0.0 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NPV_P10 PF05531.7 gi|345007402|ref|YP_004810254.1| - 0.0016 18.6 0.3 1.8 8.8 0.2 2.2 1 1 1 2 2 2 2 Nucleopolyhedrovirus P10 protein DUF1664 PF07889.7 gi|345007402|ref|YP_004810254.1| - 0.11 12.2 0.0 5 6.9 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1664) Phage_int_SAM_1 PF02899.12 gi|345007403|ref|YP_004810255.1| - 6.2e-06 26.2 0.0 0.0013 18.8 0.0 3.5 4 0 0 4 4 4 1 Phage integrase, N-terminal SAM-like domain Phage_integrase PF00589.17 gi|345007403|ref|YP_004810255.1| - 0.012 15.2 0.0 0.047 13.3 0.0 2.0 1 1 0 1 1 1 0 Phage integrase family Phage_int_SAM_4 PF13495.1 gi|345007403|ref|YP_004810255.1| - 0.031 14.6 0.0 0.064 13.5 0.0 1.6 1 0 0 1 1 1 0 Phage integrase, N-terminal SAM-like domain Daxx PF03344.10 gi|345007404|ref|YP_004810256.1| - 0.37 9.2 3.8 0.37 9.2 2.6 1.1 1 0 0 1 1 1 0 Daxx Family CbiA PF01656.18 gi|345007405|ref|YP_004810257.1| - 1.4e-25 89.8 0.0 1.9e-25 89.4 0.0 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|345007405|ref|YP_004810257.1| - 6.4e-09 35.9 0.0 6e-08 32.7 0.0 2.1 1 1 0 1 1 1 1 AAA domain MipZ PF09140.6 gi|345007405|ref|YP_004810257.1| - 1e-07 31.3 0.1 0.00085 18.4 0.1 2.9 3 0 0 3 3 3 2 ATPase MipZ YhjQ PF06564.7 gi|345007405|ref|YP_004810257.1| - 2.8e-05 23.5 0.0 4.1e-05 23.0 0.0 1.1 1 0 0 1 1 1 1 YhjQ protein ArsA_ATPase PF02374.10 gi|345007405|ref|YP_004810257.1| - 0.00012 21.1 0.1 0.0012 17.9 0.0 2.2 2 0 0 2 2 2 1 Anion-transporting ATPase VirC1 PF07015.6 gi|345007405|ref|YP_004810257.1| - 0.0015 17.6 0.0 0.41 9.6 0.0 2.2 2 0 0 2 2 2 2 VirC1 protein AAA_17 PF13207.1 gi|345007405|ref|YP_004810257.1| - 0.0029 18.4 0.6 0.008 16.9 0.4 1.7 1 1 0 1 1 1 1 AAA domain APS_kinase PF01583.15 gi|345007405|ref|YP_004810257.1| - 0.0055 16.3 0.1 0.013 15.1 0.1 1.5 1 0 0 1 1 1 1 Adenylylsulphate kinase Fer4_NifH PF00142.13 gi|345007405|ref|YP_004810257.1| - 0.0072 15.5 0.0 0.33 10.0 0.0 2.3 2 0 0 2 2 2 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA_25 PF13481.1 gi|345007405|ref|YP_004810257.1| - 0.023 14.1 0.2 0.057 12.8 0.1 1.7 1 1 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|345007405|ref|YP_004810257.1| - 0.044 13.2 0.1 0.17 11.2 0.0 1.9 2 1 0 2 2 2 0 AAA-like domain SRP54 PF00448.17 gi|345007405|ref|YP_004810257.1| - 0.087 12.2 0.4 3.6 6.9 0.0 2.4 3 0 0 3 3 3 0 SRP54-type protein, GTPase domain Abhydrolase_5 PF12695.2 gi|345007405|ref|YP_004810257.1| - 0.15 11.8 0.0 1.5 8.5 0.0 2.2 2 0 0 2 2 2 0 Alpha/beta hydrolase family DUF846 PF05832.7 gi|345007406|ref|YP_004810258.1| - 0.22 11.1 2.5 0.27 10.9 1.7 1.1 1 0 0 1 1 1 0 Eukaryotic protein of unknown function (DUF846) DUF1352 PF07086.7 gi|345007406|ref|YP_004810258.1| - 0.53 9.8 3.1 0.57 9.7 2.1 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1352) HTH_23 PF13384.1 gi|345007407|ref|YP_004810259.1| - 5.1e-06 25.9 0.4 3.2e-05 23.4 0.0 2.4 2 1 1 3 3 3 1 Homeodomain-like domain HTH_28 PF13518.1 gi|345007407|ref|YP_004810259.1| - 4.2e-05 23.4 0.1 0.00021 21.2 0.0 2.2 1 1 1 2 2 2 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|345007407|ref|YP_004810259.1| - 0.00036 20.1 0.2 0.00094 18.8 0.1 1.7 1 1 1 2 2 2 1 MarR family Fe_dep_repress PF01325.14 gi|345007407|ref|YP_004810259.1| - 0.00062 19.6 0.0 0.005 16.7 0.0 2.2 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain HTH_1 PF00126.22 gi|345007407|ref|YP_004810259.1| - 0.0016 18.1 0.5 0.0044 16.7 0.1 1.9 2 0 0 2 2 2 1 Bacterial regulatory helix-turn-helix protein, lysR family TrmB PF01978.14 gi|345007407|ref|YP_004810259.1| - 0.002 17.7 0.0 0.0038 16.9 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.1 gi|345007407|ref|YP_004810259.1| - 0.0037 16.6 0.0 0.0061 15.9 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Rrf2 PF02082.15 gi|345007407|ref|YP_004810259.1| - 0.0043 17.1 0.0 0.051 13.6 0.0 2.3 2 0 0 2 2 2 1 Transcriptional regulator HTH_29 PF13551.1 gi|345007407|ref|YP_004810259.1| - 0.0056 16.8 0.1 0.013 15.5 0.0 1.7 2 0 0 2 2 2 1 Winged helix-turn helix GntR PF00392.16 gi|345007407|ref|YP_004810259.1| - 0.0069 15.7 0.1 0.029 13.8 0.0 2.0 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family HTH_30 PF13556.1 gi|345007407|ref|YP_004810259.1| - 0.014 14.9 0.0 0.027 14.0 0.0 1.5 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain DUF2250 PF10007.4 gi|345007407|ref|YP_004810259.1| - 0.018 14.9 0.0 0.03 14.2 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) RPA_C PF08784.6 gi|345007407|ref|YP_004810259.1| - 0.022 15.1 0.0 0.045 14.1 0.0 1.5 1 0 0 1 1 1 0 Replication protein A C terminal DUF883 PF05957.8 gi|345007407|ref|YP_004810259.1| - 0.052 13.9 1.0 0.095 13.1 0.7 1.4 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF883) NTP_transf_5 PF14907.1 gi|345007408|ref|YP_004810260.1| - 8.4e-08 31.8 0.0 1.2e-07 31.3 0.0 1.3 1 1 0 1 1 1 1 Uncharacterised nucleotidyltransferase DUF1814 PF08843.6 gi|345007408|ref|YP_004810260.1| - 8.6e-07 28.9 0.9 3.2e-06 27.0 0.6 1.8 1 1 0 1 1 1 1 Nucleotidyl transferase of unknown function (DUF1814) Propep_M14 PF02244.11 gi|345007408|ref|YP_004810260.1| - 0.0016 18.0 0.1 0.0053 16.3 0.0 1.9 2 0 0 2 2 2 1 Carboxypeptidase activation peptide NTP_transf_2 PF01909.18 gi|345007408|ref|YP_004810260.1| - 0.12 12.7 0.2 0.26 11.6 0.0 1.6 2 0 0 2 2 2 0 Nucleotidyltransferase domain TRAM PF01938.15 gi|345007410|ref|YP_004810262.1| - 1.7e-15 56.5 1.2 2.6e-15 55.9 0.9 1.3 1 0 0 1 1 1 1 TRAM domain PIN PF01850.16 gi|345007412|ref|YP_004810264.1| - 9.5e-05 22.7 0.1 0.00051 20.3 0.0 2.0 2 0 0 2 2 2 1 PIN domain HTH_19 PF12844.2 gi|345007413|ref|YP_004810265.1| - 0.013 15.5 0.0 0.032 14.2 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain DDE_Tnp_1 PF01609.16 gi|345007415|ref|YP_004810267.1| - 3.1e-30 105.3 0.5 4e-30 104.9 0.4 1.1 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1 PF01609.16 gi|345007416|ref|YP_004810268.1| - 1.3e-19 70.6 1.3 2.2e-19 69.8 0.9 1.3 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_3 PF13612.1 gi|345007416|ref|YP_004810268.1| - 4e-05 23.4 0.2 6.5e-05 22.7 0.2 1.3 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_2 PF13586.1 gi|345007416|ref|YP_004810268.1| - 0.00063 19.8 0.9 0.0018 18.4 0.6 1.8 1 1 0 1 1 1 1 Transposase DDE domain DUF1772 PF08592.6 gi|345007416|ref|YP_004810268.1| - 0.088 12.5 0.0 0.14 11.9 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1772) TPR_16 PF13432.1 gi|345007417|ref|YP_004810269.1| - 2.5e-07 31.1 2.9 7.3e-07 29.7 0.6 2.8 2 1 0 2 2 2 1 Tetratricopeptide repeat TPR_11 PF13414.1 gi|345007417|ref|YP_004810269.1| - 3.5e-06 26.5 0.5 0.0004 19.9 0.2 2.5 2 0 0 2 2 2 1 TPR repeat TPR_14 PF13428.1 gi|345007417|ref|YP_004810269.1| - 3.6e-05 24.0 7.2 0.0019 18.6 0.0 4.7 3 1 2 5 5 5 1 Tetratricopeptide repeat TPR_12 PF13424.1 gi|345007417|ref|YP_004810269.1| - 0.00012 21.9 1.1 0.00029 20.7 0.2 2.2 2 1 0 2 2 1 1 Tetratricopeptide repeat TPR_2 PF07719.12 gi|345007417|ref|YP_004810269.1| - 0.00047 19.8 5.9 0.9 9.6 0.0 4.0 4 0 0 4 4 4 2 Tetratricopeptide repeat TPR_6 PF13174.1 gi|345007417|ref|YP_004810269.1| - 0.00057 20.1 0.9 0.55 10.8 0.0 3.5 3 0 0 3 3 3 1 Tetratricopeptide repeat zf-Di19 PF05605.7 gi|345007417|ref|YP_004810269.1| - 0.0012 18.9 0.2 0.0027 17.7 0.2 1.6 1 0 0 1 1 1 1 Drought induced 19 protein (Di19), zinc-binding TPR_19 PF14559.1 gi|345007417|ref|YP_004810269.1| - 0.0029 17.8 1.7 0.23 11.8 0.0 3.1 3 1 0 3 3 2 1 Tetratricopeptide repeat zf-C2H2_4 PF13894.1 gi|345007417|ref|YP_004810269.1| - 0.0035 17.5 0.2 0.01 16.1 0.1 1.8 1 0 0 1 1 1 1 C2H2-type zinc finger TPR_7 PF13176.1 gi|345007417|ref|YP_004810269.1| - 0.0079 15.9 1.0 1.1 9.1 0.3 3.5 2 1 0 2 2 2 1 Tetratricopeptide repeat FdhE PF04216.7 gi|345007417|ref|YP_004810269.1| - 0.012 15.4 0.2 0.027 14.1 0.2 1.7 1 0 0 1 1 1 0 Protein involved in formate dehydrogenase formation zf-C2H2 PF00096.21 gi|345007417|ref|YP_004810269.1| - 0.012 15.8 0.1 0.023 15.0 0.1 1.5 1 0 0 1 1 1 0 Zinc finger, C2H2 type SHNi-TPR PF10516.4 gi|345007417|ref|YP_004810269.1| - 0.02 14.1 0.2 0.47 9.7 0.1 2.8 2 0 0 2 2 2 0 SHNi-TPR Toxin_25 PF08095.6 gi|345007417|ref|YP_004810269.1| - 0.028 14.1 0.6 2.2 8.0 0.1 2.5 2 0 0 2 2 2 0 Hefutoxin family zf-C2H2_jaz PF12171.3 gi|345007417|ref|YP_004810269.1| - 0.041 14.0 0.0 0.095 12.8 0.0 1.6 1 0 0 1 1 1 0 Zinc-finger double-stranded RNA-binding zf-C2HC_2 PF13913.1 gi|345007417|ref|YP_004810269.1| - 0.12 12.0 0.1 0.27 10.9 0.1 1.5 1 0 0 1 1 1 0 zinc-finger of a C2HC-type Calci_bind_CcbP PF11535.3 gi|345007418|ref|YP_004810270.1| - 2e-40 137.3 0.5 2.3e-40 137.1 0.3 1.0 1 0 0 1 1 1 1 Calcium binding ResIII PF04851.10 gi|345007419|ref|YP_004810271.1| - 3.2e-23 82.5 0.0 1.1e-22 80.7 0.0 1.9 2 1 0 2 2 2 1 Type III restriction enzyme, res subunit Helicase_C PF00271.26 gi|345007419|ref|YP_004810271.1| - 3.3e-20 71.7 0.1 3.3e-20 71.7 0.1 2.0 2 0 0 2 2 2 1 Helicase conserved C-terminal domain DEAD PF00270.24 gi|345007419|ref|YP_004810271.1| - 1.3e-10 41.0 0.0 3.1e-10 39.8 0.0 1.6 1 0 0 1 1 1 1 DEAD/DEAH box helicase AAA_22 PF13401.1 gi|345007419|ref|YP_004810271.1| - 0.0079 16.3 0.0 0.05 13.7 0.0 2.3 2 1 1 3 3 3 1 AAA domain IstB_IS21 PF01695.12 gi|345007419|ref|YP_004810271.1| - 0.015 14.7 0.0 0.05 13.0 0.0 1.9 2 0 0 2 2 2 0 IstB-like ATP binding protein Helicase_C_2 PF13307.1 gi|345007419|ref|YP_004810271.1| - 0.082 12.8 0.4 1.2 9.0 0.0 2.9 3 1 0 3 3 3 0 Helicase C-terminal domain DUF790 PF05626.6 gi|345007420|ref|YP_004810272.1| - 1.3e-130 435.3 0.0 1.6e-130 435.0 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF790) HTH_23 PF13384.1 gi|345007421|ref|YP_004810273.1| - 0.00018 21.0 0.1 0.00079 18.9 0.0 2.1 3 0 0 3 3 3 1 Homeodomain-like domain MarR_2 PF12802.2 gi|345007421|ref|YP_004810273.1| - 0.00067 19.2 0.1 0.0017 18.0 0.0 1.7 1 1 1 2 2 2 1 MarR family Fe_dep_repress PF01325.14 gi|345007421|ref|YP_004810273.1| - 0.0026 17.6 0.0 0.012 15.5 0.0 2.0 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain GntR PF00392.16 gi|345007421|ref|YP_004810273.1| - 0.0026 17.1 0.0 0.04 13.3 0.0 2.3 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family Rrf2 PF02082.15 gi|345007421|ref|YP_004810273.1| - 0.0031 17.6 0.0 0.086 12.9 0.0 2.4 2 0 0 2 2 2 1 Transcriptional regulator TrmB PF01978.14 gi|345007421|ref|YP_004810273.1| - 0.0037 16.9 0.0 0.0069 16.0 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB DUF2250 PF10007.4 gi|345007421|ref|YP_004810273.1| - 0.0088 15.9 0.0 0.014 15.2 0.0 1.3 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) HTH_1 PF00126.22 gi|345007421|ref|YP_004810273.1| - 0.011 15.4 0.1 0.045 13.4 0.0 1.9 2 0 0 2 2 2 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_28 PF13518.1 gi|345007421|ref|YP_004810273.1| - 0.017 15.1 0.0 0.097 12.6 0.0 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain RPA_C PF08784.6 gi|345007421|ref|YP_004810273.1| - 0.018 15.4 0.0 0.035 14.5 0.0 1.5 1 0 0 1 1 1 0 Replication protein A C terminal HTH_24 PF13412.1 gi|345007421|ref|YP_004810273.1| - 0.046 13.1 0.0 0.077 12.3 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_29 PF13551.1 gi|345007421|ref|YP_004810273.1| - 0.11 12.7 0.0 0.21 11.7 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn helix LVIVD PF08309.6 gi|345007422|ref|YP_004810274.1| - 0.064 12.2 0.3 0.13 11.2 0.2 1.5 1 0 0 1 1 1 0 LVIVD repeat CorA PF01544.13 gi|345007425|ref|YP_004810277.1| - 0.017 14.1 1.7 0.019 14.0 1.2 1.0 1 0 0 1 1 1 0 CorA-like Mg2+ transporter protein PilJ PF13675.1 gi|345007425|ref|YP_004810277.1| - 0.031 14.6 1.5 2.3 8.5 0.1 2.1 1 1 1 2 2 2 0 Type IV pili methyl-accepting chemotaxis transducer N-term HXXSHH PF07586.6 gi|345007425|ref|YP_004810277.1| - 0.12 11.2 0.4 5 5.9 0.1 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF1552) APH PF01636.18 gi|345007425|ref|YP_004810277.1| - 0.23 11.1 3.7 0.27 10.9 2.6 1.1 1 0 0 1 1 1 0 Phosphotransferase enzyme family DDE_Tnp_1 PF01609.16 gi|345007426|ref|YP_004810278.1| - 2e-25 89.6 0.3 2.6e-25 89.2 0.2 1.2 1 0 0 1 1 1 1 Transposase DDE domain MarR_2 PF12802.2 gi|345007427|ref|YP_004810279.1| - 0.00079 19.0 0.0 0.0015 18.1 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.2 gi|345007427|ref|YP_004810279.1| - 0.0011 18.7 0.0 0.0017 18.1 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.14 gi|345007427|ref|YP_004810279.1| - 0.011 15.4 0.0 0.021 14.5 0.0 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_27 PF13463.1 gi|345007427|ref|YP_004810279.1| - 0.02 15.1 0.0 0.042 14.1 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain MarR PF01047.17 gi|345007427|ref|YP_004810279.1| - 0.092 12.4 0.0 0.2 11.3 0.0 1.5 1 0 0 1 1 1 0 MarR family HTH_43 PF09904.4 gi|345007427|ref|YP_004810279.1| - 0.14 11.9 0.0 0.36 10.6 0.0 1.6 1 1 0 1 1 1 0 Winged helix-turn helix DUF3488 PF11992.3 gi|345007429|ref|YP_004810281.1| - 0.0027 16.4 3.7 0.003 16.2 2.5 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF3488) Bax1-I PF01027.15 gi|345007429|ref|YP_004810281.1| - 0.016 14.7 7.3 0.02 14.5 5.0 1.0 1 0 0 1 1 1 0 Inhibitor of apoptosis-promoting Bax1 NADHdh-2_N PF12155.3 gi|345007429|ref|YP_004810281.1| - 0.066 13.3 2.8 0.075 13.2 1.8 1.4 1 1 0 1 1 1 0 NADH dehydrogenase subunit 2 N-terminal DDE_Tnp_1 PF01609.16 gi|345007430|ref|YP_004810282.1| - 2.2e-10 40.4 2.5 5.1e-10 39.2 1.8 1.6 1 1 0 1 1 1 1 Transposase DDE domain DUF772 PF05598.6 gi|345007430|ref|YP_004810282.1| - 0.002 17.9 0.6 0.0044 16.8 0.0 1.9 2 0 0 2 2 2 1 Transposase domain (DUF772) HTH_18 PF12833.2 gi|345007430|ref|YP_004810282.1| - 0.066 13.3 0.2 2.2 8.4 0.1 2.6 2 0 0 2 2 2 0 Helix-turn-helix domain DDE_Tnp_1 PF01609.16 gi|345007433|ref|YP_004810285.1| - 2.8e-05 23.7 0.0 6.5e-05 22.5 0.0 1.5 1 1 0 1 1 1 1 Transposase DDE domain Phage_integrase PF00589.17 gi|345007434|ref|YP_004810286.1| - 3e-06 27.0 0.0 0.0023 17.6 0.0 3.6 3 1 0 3 3 3 1 Phage integrase family Phage_int_SAM_4 PF13495.1 gi|345007434|ref|YP_004810286.1| - 0.00081 19.6 0.0 0.0066 16.7 0.0 2.1 2 0 0 2 2 2 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_1 PF02899.12 gi|345007434|ref|YP_004810286.1| - 0.0018 18.4 0.0 0.011 15.8 0.0 2.3 2 0 0 2 2 2 1 Phage integrase, N-terminal SAM-like domain Trypan_PARP PF05887.6 gi|345007435|ref|YP_004810287.1| - 0.00065 19.5 8.2 0.00096 18.9 5.7 1.2 1 0 0 1 1 1 1 Procyclic acidic repetitive protein (PARP) NESP55 PF06390.7 gi|345007435|ref|YP_004810287.1| - 0.0032 16.8 6.2 0.0039 16.6 4.3 1.1 1 0 0 1 1 1 1 Neuroendocrine-specific golgi protein P55 (NESP55) eIF3_subunit PF08597.5 gi|345007435|ref|YP_004810287.1| - 0.046 13.2 5.2 0.054 13.0 3.6 1.1 1 0 0 1 1 1 0 Translation initiation factor eIF3 subunit Tim54 PF11711.3 gi|345007435|ref|YP_004810287.1| - 0.16 10.5 1.0 0.17 10.4 0.7 1.2 1 0 0 1 1 1 0 Inner membrane protein import complex subunit Tim54 BUD22 PF09073.5 gi|345007435|ref|YP_004810287.1| - 0.66 8.9 7.8 0.77 8.7 5.4 1.1 1 0 0 1 1 1 0 BUD22 CDC45 PF02724.9 gi|345007435|ref|YP_004810287.1| - 1.6 6.6 6.8 1.9 6.4 4.7 1.0 1 0 0 1 1 1 0 CDC45-like protein TRAP_alpha PF03896.11 gi|345007435|ref|YP_004810287.1| - 1.9 7.3 4.5 2.4 7.0 3.1 1.1 1 0 0 1 1 1 0 Translocon-associated protein (TRAP), alpha subunit SDA1 PF05285.7 gi|345007435|ref|YP_004810287.1| - 3 7.0 9.7 3.7 6.7 6.7 1.2 1 0 0 1 1 1 0 SDA1 RRN3 PF05327.6 gi|345007435|ref|YP_004810287.1| - 4.5 5.2 5.8 5.4 4.9 4.1 1.1 1 0 0 1 1 1 0 RNA polymerase I specific transcription initiation factor RRN3 Daxx PF03344.10 gi|345007435|ref|YP_004810287.1| - 4.6 5.6 10.1 5.2 5.4 7.0 1.1 1 0 0 1 1 1 0 Daxx Family Nop14 PF04147.7 gi|345007435|ref|YP_004810287.1| - 5.5 4.7 11.7 6.6 4.5 8.1 1.1 1 0 0 1 1 1 0 Nop14-like family CbiA PF01656.18 gi|345007436|ref|YP_004810288.1| - 5.5e-21 74.8 0.0 7.3e-21 74.4 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|345007436|ref|YP_004810288.1| - 2.1e-07 31.0 0.2 6.5e-07 29.4 0.1 1.8 1 1 0 1 1 1 1 AAA domain ArsA_ATPase PF02374.10 gi|345007436|ref|YP_004810288.1| - 0.00018 20.6 0.0 0.0016 17.5 0.0 2.1 2 0 0 2 2 2 1 Anion-transporting ATPase MipZ PF09140.6 gi|345007436|ref|YP_004810288.1| - 0.0014 17.7 0.0 0.057 12.4 0.0 2.1 2 0 0 2 2 2 1 ATPase MipZ AAA_10 PF12846.2 gi|345007436|ref|YP_004810288.1| - 0.02 14.3 0.0 0.029 13.8 0.0 1.3 1 0 0 1 1 1 0 AAA-like domain Glyco_hydro_114 PF03537.8 gi|345007436|ref|YP_004810288.1| - 0.038 13.7 0.4 8.4 6.2 0.0 2.5 2 0 0 2 2 2 0 Glycoside-hydrolase family GH114 Abhydrolase_5 PF12695.2 gi|345007436|ref|YP_004810288.1| - 0.052 13.3 0.0 0.079 12.7 0.0 1.7 1 1 0 1 1 1 0 Alpha/beta hydrolase family SRP54 PF00448.17 gi|345007436|ref|YP_004810288.1| - 0.058 12.8 0.1 0.97 8.8 0.0 2.5 3 0 0 3 3 3 0 SRP54-type protein, GTPase domain Metallophos_2 PF12850.2 gi|345007438|ref|YP_004810290.1| - 3.3e-11 43.2 0.2 4.9e-11 42.6 0.1 1.3 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|345007438|ref|YP_004810290.1| - 1.5e-07 30.9 0.1 3.3e-07 29.9 0.1 1.8 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_3 PF14582.1 gi|345007438|ref|YP_004810290.1| - 0.00075 18.7 0.0 0.0011 18.1 0.0 1.3 1 0 0 1 1 1 1 Metallophosphoesterase, calcineurin superfamily Rad51 PF08423.6 gi|345007439|ref|YP_004810291.1| - 5.2e-50 169.7 1.5 5.2e-24 84.5 0.2 2.5 2 1 0 2 2 2 2 Rad51 AAA_25 PF13481.1 gi|345007439|ref|YP_004810291.1| - 7.1e-08 32.0 0.1 1.7e-07 30.8 0.0 1.6 1 1 0 1 1 1 1 AAA domain HHH_5 PF14520.1 gi|345007439|ref|YP_004810291.1| - 1.5e-07 31.4 0.2 1.8e-06 28.0 0.0 2.4 2 1 0 2 2 2 1 Helix-hairpin-helix domain RecA PF00154.16 gi|345007439|ref|YP_004810291.1| - 2.9e-05 23.2 0.1 9.1e-05 21.6 0.0 1.7 2 0 0 2 2 2 1 recA bacterial DNA recombination protein KaiC PF06745.8 gi|345007439|ref|YP_004810291.1| - 0.00011 21.4 0.7 0.00095 18.3 0.5 2.1 1 1 0 1 1 1 1 KaiC Cdd1 PF11731.3 gi|345007439|ref|YP_004810291.1| - 0.0023 17.8 0.0 0.0057 16.5 0.0 1.6 1 0 0 1 1 1 1 Pathogenicity locus Arch_ATPase PF01637.13 gi|345007439|ref|YP_004810291.1| - 0.026 14.2 0.0 0.039 13.6 0.0 1.2 1 0 0 1 1 1 0 Archaeal ATPase HHH_2 PF12826.2 gi|345007439|ref|YP_004810291.1| - 0.059 13.2 0.1 0.23 11.3 0.0 2.0 2 1 0 2 2 2 0 Helix-hairpin-helix motif CoiA PF06054.6 gi|345007440|ref|YP_004810292.1| - 5.1e-05 22.3 0.0 7.7e-05 21.7 0.0 1.2 1 0 0 1 1 1 1 Competence protein CoiA-like family Zn_ribbon_recom PF13408.1 gi|345007440|ref|YP_004810292.1| - 0.00034 20.8 2.2 0.032 14.5 0.2 2.9 2 0 0 2 2 2 1 Recombinase zinc beta ribbon domain zf-TFIIB PF13453.1 gi|345007440|ref|YP_004810292.1| - 0.0065 15.6 0.9 2.6 7.2 0.2 3.0 2 0 0 2 2 2 1 Transcription factor zinc-finger Zn-ribbon_8 PF09723.5 gi|345007440|ref|YP_004810292.1| - 0.011 15.7 0.8 5 7.1 0.0 3.4 3 0 0 3 3 3 0 Zinc ribbon domain Ogr_Delta PF04606.7 gi|345007440|ref|YP_004810292.1| - 0.033 13.8 2.3 5.8 6.6 0.1 2.8 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger zf-C4_Topoisom PF01396.14 gi|345007440|ref|YP_004810292.1| - 0.04 13.4 3.2 4.6 6.8 0.0 3.0 3 0 0 3 3 3 0 Topoisomerase DNA binding C4 zinc finger Prok-RING_1 PF14446.1 gi|345007440|ref|YP_004810292.1| - 0.049 13.3 0.9 7.6 6.3 0.1 2.7 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 TF_Zn_Ribbon PF08271.7 gi|345007440|ref|YP_004810292.1| - 0.055 12.7 6.0 0.39 10.0 0.6 2.7 2 0 0 2 2 2 0 TFIIB zinc-binding DZR PF12773.2 gi|345007440|ref|YP_004810292.1| - 0.076 12.8 3.6 1.8 8.4 0.1 3.0 3 0 0 3 3 3 0 Double zinc ribbon zinc_ribbon_5 PF13719.1 gi|345007440|ref|YP_004810292.1| - 0.081 12.5 0.1 11 5.7 0.0 2.5 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|345007440|ref|YP_004810292.1| - 0.1 12.2 0.1 11 5.8 0.0 2.6 2 0 0 2 2 2 0 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|345007440|ref|YP_004810292.1| - 0.12 11.5 10.0 0.13 11.5 0.1 3.3 4 0 0 4 4 3 0 zinc-ribbon domain zf-NADH-PPase PF09297.6 gi|345007440|ref|YP_004810292.1| - 0.42 10.1 4.1 3.2 7.3 0.1 3.0 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain DNA_ligase_ZBD PF03119.11 gi|345007440|ref|YP_004810292.1| - 0.48 10.1 10.4 2.8 7.7 2.6 4.1 3 1 0 3 3 3 0 NAD-dependent DNA ligase C4 zinc finger domain Nudix_N_2 PF14803.1 gi|345007440|ref|YP_004810292.1| - 0.52 10.0 3.5 4 7.2 0.1 2.9 3 0 0 3 3 2 0 Nudix N-terminal zf-IS66 PF13005.2 gi|345007440|ref|YP_004810292.1| - 0.62 10.0 8.1 4.8 7.2 0.0 3.6 4 0 0 4 4 4 0 zinc-finger binding domain of transposase IS66 zinc_ribbon_2 PF13240.1 gi|345007440|ref|YP_004810292.1| - 1.4 8.4 12.4 0.59 9.6 0.1 3.8 5 0 0 5 5 4 0 zinc-ribbon domain DUF1272 PF06906.6 gi|345007440|ref|YP_004810292.1| - 1.6 8.6 4.7 18 5.2 0.1 3.2 3 0 0 3 3 3 0 Protein of unknown function (DUF1272) zf-ISL3 PF14690.1 gi|345007440|ref|YP_004810292.1| - 1.7 8.7 4.9 23 5.1 0.0 3.0 3 0 0 3 3 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 DUF202 PF02656.10 gi|345007442|ref|YP_004810294.1| - 0.012 15.8 0.2 0.4 10.9 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF202) DDE_Tnp_1 PF01609.16 gi|345007444|ref|YP_004810296.1| - 0.01 15.4 0.1 0.044 13.3 0.1 2.0 1 1 0 1 1 1 0 Transposase DDE domain IncA PF04156.9 gi|345007446|ref|YP_004810298.1| - 0.065 12.8 0.1 0.086 12.4 0.1 1.2 1 0 0 1 1 1 0 IncA protein MarR_2 PF12802.2 gi|345007446|ref|YP_004810298.1| - 0.08 12.6 0.8 0.2 11.3 0.6 1.6 1 1 0 1 1 1 0 MarR family TF_Zn_Ribbon PF08271.7 gi|345007447|ref|YP_004810299.1| - 0.14 11.5 0.5 0.34 10.2 0.1 1.8 2 0 0 2 2 2 0 TFIIB zinc-binding Phage_integrase PF00589.17 gi|345007449|ref|YP_004810301.1| - 1.5e-16 60.5 4.1 2.8e-15 56.3 2.8 2.2 1 1 0 1 1 1 1 Phage integrase family EAP30 PF04157.11 gi|345007450|ref|YP_004810302.1| - 0.02 14.0 0.1 0.066 12.3 0.1 1.7 1 1 0 1 1 1 0 EAP30/Vps36 family Orthopox_F14 PF06076.7 gi|345007450|ref|YP_004810302.1| - 0.084 12.9 3.3 0.12 12.4 0.5 2.3 2 1 0 2 2 2 0 Orthopoxvirus F14 protein DNA_ligase_ZBD PF03119.11 gi|345007451|ref|YP_004810303.1| - 0.0023 17.5 1.8 1.5 8.6 0.1 3.1 3 0 0 3 3 3 2 NAD-dependent DNA ligase C4 zinc finger domain zf-C3HC4_3 PF13920.1 gi|345007451|ref|YP_004810303.1| - 0.0086 15.7 2.6 0.49 10.1 0.1 2.3 2 0 0 2 2 2 1 Zinc finger, C3HC4 type (RING finger) Prok-RING_1 PF14446.1 gi|345007451|ref|YP_004810303.1| - 0.018 14.7 0.3 0.54 10.0 0.0 2.2 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 Zn_Tnp_IS1595 PF12760.2 gi|345007451|ref|YP_004810303.1| - 0.029 14.1 0.7 3 7.7 0.1 2.3 2 0 0 2 2 2 0 Transposase zinc-ribbon domain RRN7 PF11781.3 gi|345007451|ref|YP_004810303.1| - 0.037 13.5 1.2 4.1 6.9 0.1 2.5 2 0 0 2 2 2 0 RNA polymerase I-specific transcription initiation factor Rrn7 zf-Di19 PF05605.7 gi|345007451|ref|YP_004810303.1| - 0.053 13.6 0.2 7.5 6.7 0.0 2.3 2 0 0 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding SfsA PF03749.8 gi|345007451|ref|YP_004810303.1| - 0.066 12.6 0.0 0.39 10.1 0.0 1.9 1 1 1 2 2 2 0 Sugar fermentation stimulation protein zf-ISL3 PF14690.1 gi|345007451|ref|YP_004810303.1| - 0.074 13.1 1.4 1.6 8.8 0.1 2.5 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 RPA_interact_C PF14768.1 gi|345007451|ref|YP_004810303.1| - 0.088 13.2 0.6 6.9 7.1 0.1 2.4 2 0 0 2 2 2 0 Replication protein A interacting C-terminal NADH-G_4Fe-4S_3 PF10588.4 gi|345007451|ref|YP_004810303.1| - 0.14 11.3 2.3 0.44 9.8 0.3 2.3 2 0 0 2 2 2 0 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region Prok-RING_4 PF14447.1 gi|345007451|ref|YP_004810303.1| - 0.18 11.3 1.5 12 5.4 0.1 2.4 2 0 0 2 2 2 0 Prokaryotic RING finger family 4 zf-RING-like PF08746.6 gi|345007451|ref|YP_004810303.1| - 0.54 10.2 3.5 0.71 9.9 0.1 2.3 2 0 0 2 2 2 0 RING-like domain Rad50_zn_hook PF04423.9 gi|345007451|ref|YP_004810303.1| - 2 7.9 7.0 9.5 5.7 0.3 2.9 3 0 0 3 3 3 0 Rad50 zinc hook motif HTH_24 PF13412.1 gi|345007452|ref|YP_004810304.1| - 1e-11 44.0 0.0 2.6e-05 23.5 0.0 3.2 3 0 0 3 3 3 2 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.1 gi|345007452|ref|YP_004810304.1| - 4.2e-08 32.6 0.0 0.0019 17.6 0.0 2.9 2 0 0 2 2 2 2 AsnC-type helix-turn-helix domain MarR PF01047.17 gi|345007452|ref|YP_004810304.1| - 0.0042 16.7 0.0 3.6 7.3 0.0 3.4 3 0 0 3 3 3 1 MarR family HTH_Tnp_Tc3_2 PF01498.13 gi|345007452|ref|YP_004810304.1| - 0.0072 16.3 1.8 3.6 7.7 0.0 4.1 5 0 0 5 5 5 1 Transposase HTH_23 PF13384.1 gi|345007452|ref|YP_004810304.1| - 0.0082 15.7 0.0 6 6.6 0.0 2.9 3 0 0 3 3 3 2 Homeodomain-like domain LexA_DNA_bind PF01726.11 gi|345007452|ref|YP_004810304.1| - 0.026 14.0 0.0 0.6 9.7 0.0 3.0 2 0 0 2 2 2 0 LexA DNA binding domain HTH_Tnp_1 PF01527.15 gi|345007452|ref|YP_004810304.1| - 0.043 13.7 0.2 0.19 11.6 0.2 2.2 1 1 0 1 1 1 0 Transposase HTH_5 PF01022.15 gi|345007452|ref|YP_004810304.1| - 0.05 13.2 0.1 6.2 6.5 0.0 3.0 3 0 0 3 3 3 0 Bacterial regulatory protein, arsR family HTH_AraC PF00165.18 gi|345007452|ref|YP_004810304.1| - 0.079 12.8 0.1 3.8 7.4 0.0 2.7 2 0 0 2 2 2 0 Bacterial regulatory helix-turn-helix proteins, AraC family Carbpep_Y_N PF05388.6 gi|345007452|ref|YP_004810304.1| - 0.16 12.1 2.4 1.7 8.8 0.0 3.6 2 2 0 3 3 3 0 Carboxypeptidase Y pro-peptide TipAS PF07739.8 gi|345007452|ref|YP_004810304.1| - 9.2 6.6 9.1 15 5.9 0.1 3.4 3 1 0 3 3 3 0 TipAS antibiotic-recognition domain DUF790 PF05626.6 gi|345007453|ref|YP_004810305.1| - 3.2e-134 447.2 0.0 3.6e-134 447.0 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF790) Helicase_C PF00271.26 gi|345007454|ref|YP_004810306.1| - 3.9e-20 71.4 0.0 7.5e-20 70.5 0.0 1.5 1 0 0 1 1 1 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|345007454|ref|YP_004810306.1| - 6.3e-09 35.9 0.0 2.7e-08 33.8 0.0 2.0 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit DEAD PF00270.24 gi|345007454|ref|YP_004810306.1| - 0.0023 17.4 0.0 0.0071 15.8 0.0 1.8 1 0 0 1 1 1 1 DEAD/DEAH box helicase AAA_22 PF13401.1 gi|345007454|ref|YP_004810306.1| - 0.019 15.1 0.0 0.18 11.9 0.0 2.4 2 1 1 3 3 3 0 AAA domain Helicase_C_2 PF13307.1 gi|345007454|ref|YP_004810306.1| - 0.15 11.9 1.2 0.93 9.4 0.0 2.6 2 1 1 3 3 3 0 Helicase C-terminal domain VP9 PF09625.5 gi|345007456|ref|YP_004810308.1| - 0.11 12.2 0.0 0.77 9.6 0.0 2.1 2 0 0 2 2 2 0 VP9 protein Methyltransf_26 PF13659.1 gi|345133532|ref|YP_004821323.1| - 2.7e-13 49.9 0.0 4.5e-13 49.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Eco57I PF07669.6 gi|345133532|ref|YP_004821323.1| - 7.5e-09 35.9 0.0 1.3e-08 35.0 0.0 1.3 1 0 0 1 1 1 1 Eco57I restriction-modification methylase TaqI_C PF12950.2 gi|345133532|ref|YP_004821323.1| - 5.9e-08 32.4 0.0 9e-08 31.8 0.0 1.3 1 0 0 1 1 1 1 TaqI-like C-terminal specificity domain MTS PF05175.9 gi|345133532|ref|YP_004821323.1| - 0.0057 16.0 0.0 0.0089 15.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain N6_Mtase PF02384.11 gi|345133532|ref|YP_004821323.1| - 0.0096 15.0 0.0 0.036 13.1 0.0 1.8 1 1 0 1 1 1 1 N-6 DNA Methylase TrmB PF01978.14 gi|345133533|ref|YP_004821324.1| - 0.0037 16.9 0.0 0.047 13.4 0.0 2.3 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|345133533|ref|YP_004821324.1| - 0.0045 16.6 0.3 0.032 13.8 0.1 2.1 2 0 0 2 2 2 1 MarR family HTH_24 PF13412.1 gi|345133533|ref|YP_004821324.1| - 0.022 14.1 0.0 0.31 10.4 0.0 2.1 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding HTH_11 PF08279.7 gi|345133533|ref|YP_004821324.1| - 0.024 14.2 0.1 0.043 13.4 0.0 1.3 1 0 0 1 1 1 0 HTH domain HTH_AsnC-type PF13404.1 gi|345133533|ref|YP_004821324.1| - 0.028 13.9 0.2 0.12 11.9 0.2 2.0 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain HTH_20 PF12840.2 gi|345133533|ref|YP_004821324.1| - 0.028 14.2 0.0 0.06 13.1 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain UPF0150 PF03681.10 gi|345133538|ref|YP_004821329.1| - 7.4e-06 25.4 0.1 1.4e-05 24.6 0.1 1.5 1 1 0 1 1 1 1 Uncharacterised protein family (UPF0150) DUF3832 PF12909.2 gi|345133538|ref|YP_004821329.1| - 0.053 13.5 0.0 0.073 13.1 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3832) DUF3837 PF12939.2 gi|345133538|ref|YP_004821329.1| - 0.091 12.7 0.0 0.14 12.1 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF3837) YcfA PF07927.7 gi|345133539|ref|YP_004821330.1| - 9.6e-09 35.0 0.0 1.2e-08 34.7 0.0 1.1 1 0 0 1 1 1 1 YcfA-like protein Toprim_3 PF13362.1 gi|345133542|ref|YP_004821333.1| - 0.00051 20.2 0.1 0.0029 17.8 0.0 2.5 2 0 0 2 2 2 1 Toprim domain Toprim_N PF08275.6 gi|345133542|ref|YP_004821333.1| - 0.0047 16.8 0.0 0.0083 16.0 0.0 1.5 1 0 0 1 1 1 1 DNA primase catalytic core, N-terminal domain Smr PF01713.16 gi|345133542|ref|YP_004821333.1| - 0.0077 16.3 0.0 0.037 14.2 0.0 2.3 2 0 0 2 2 2 1 Smr domain Toprim_4 PF13662.1 gi|345133542|ref|YP_004821333.1| - 0.046 13.7 0.0 0.12 12.3 0.0 1.8 1 0 0 1 1 1 0 Toprim domain DUF3324 PF11797.3 gi|345133543|ref|YP_004821334.1| - 0.11 12.1 0.0 0.17 11.6 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function C-terminal (DUF3324) DUF3659 PF12396.3 gi|345133543|ref|YP_004821334.1| - 0.13 11.9 0.8 0.35 10.5 0.1 2.1 2 1 0 2 2 2 0 Protein of unknown function (DUF3659) zf-LSD1 PF06943.7 gi|345133544|ref|YP_004821335.1| - 0.079 12.5 1.1 0.14 11.7 0.8 1.4 1 0 0 1 1 1 0 LSD1 zinc finger Crp PF00325.15 gi|345133545|ref|YP_004821336.1| - 0.00081 18.8 0.1 0.0017 17.7 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, crp family TrmB PF01978.14 gi|345133545|ref|YP_004821336.1| - 0.0024 17.5 0.1 0.024 14.3 0.0 2.2 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_11 PF08279.7 gi|345133545|ref|YP_004821336.1| - 0.0038 16.8 0.1 0.02 14.5 0.0 2.0 1 1 1 2 2 2 1 HTH domain FaeA PF04703.7 gi|345133545|ref|YP_004821336.1| - 0.0043 17.1 0.0 0.011 15.8 0.0 1.7 2 0 0 2 2 2 1 FaeA-like protein HTH_Crp_2 PF13545.1 gi|345133545|ref|YP_004821336.1| - 0.005 16.6 0.0 0.0096 15.6 0.0 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_DeoR PF08220.7 gi|345133545|ref|YP_004821336.1| - 0.011 15.1 0.1 0.032 13.7 0.1 1.7 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain MarR_2 PF12802.2 gi|345133545|ref|YP_004821336.1| - 0.024 14.3 1.0 0.47 10.1 0.3 2.9 4 0 0 4 4 4 0 MarR family HTH_17 PF12728.2 gi|345133545|ref|YP_004821336.1| - 0.077 13.2 0.2 0.18 12.1 0.1 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain PaaX PF07848.7 gi|345133545|ref|YP_004821336.1| - 0.084 12.8 0.4 0.18 11.8 0.3 1.5 1 0 0 1 1 1 0 PaaX-like protein HTH_20 PF12840.2 gi|345133545|ref|YP_004821336.1| - 0.09 12.5 0.1 0.62 9.9 0.1 2.3 2 1 1 3 3 3 0 Helix-turn-helix domain HTH_23 PF13384.1 gi|345133545|ref|YP_004821336.1| - 0.1 12.2 3.7 0.18 11.5 0.4 2.7 2 1 0 2 2 2 0 Homeodomain-like domain SHOCT PF09851.4 gi|345133545|ref|YP_004821336.1| - 0.12 11.8 0.6 0.29 10.6 0.4 1.6 1 0 0 1 1 1 0 Short C-terminal domain SpaB_C PF14028.1 gi|345133545|ref|YP_004821336.1| - 0.49 9.8 7.4 36 3.7 5.1 2.0 1 1 0 1 1 1 0 SpaB C-terminal domain DDE_Tnp_1 PF01609.16 gi|345133548|ref|YP_004821339.1| - 5.6e-07 29.3 0.1 1e-06 28.4 0.1 1.4 1 0 0 1 1 1 1 Transposase DDE domain DNA_ligase_IV PF11411.3 gi|345133549|ref|YP_004821340.1| - 0.06 13.0 0.0 0.18 11.5 0.0 1.8 2 0 0 2 2 2 0 DNA ligase IV HTH_23 PF13384.1 gi|345133550|ref|YP_004821341.1| - 0.00025 20.5 0.0 0.00065 19.2 0.0 1.7 1 0 0 1 1 1 1 Homeodomain-like domain Sigma70_r4_2 PF08281.7 gi|345133550|ref|YP_004821341.1| - 0.0026 17.1 0.0 0.023 14.1 0.0 2.4 2 0 0 2 2 2 1 Sigma-70, region 4 CENP-B_N PF04218.8 gi|345133550|ref|YP_004821341.1| - 0.051 13.0 1.9 0.068 12.5 0.0 2.0 2 0 0 2 2 2 0 CENP-B N-terminal DNA-binding domain DUF2209 PF09974.4 gi|345133550|ref|YP_004821341.1| - 0.12 12.5 0.0 0.23 11.5 0.0 1.6 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2209) HTH_IclR PF09339.5 gi|345133550|ref|YP_004821341.1| - 0.12 11.9 0.0 0.21 11.1 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_28 PF13518.1 gi|345133550|ref|YP_004821341.1| - 0.17 11.9 2.3 0.29 11.1 0.0 2.5 3 0 0 3 3 3 0 Helix-turn-helix domain DUF1839 PF08893.5 gi|345133551|ref|YP_004821342.1| - 0.1 11.5 0.0 0.11 11.5 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF1839) LIM_bind PF01803.11 gi|345133553|ref|YP_004821344.1| - 0.15 11.1 0.0 0.18 10.8 0.0 1.2 1 0 0 1 1 1 0 LIM-domain binding protein DUF3110 PF11360.3 gi|345133554|ref|YP_004821345.1| - 0.044 13.5 0.0 0.06 13.1 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3110) DDE_Tnp_1 PF01609.16 gi|345133555|ref|YP_004821346.1| - 0.01 15.4 0.1 0.044 13.3 0.1 2.0 1 1 0 1 1 1 0 Transposase DDE domain AAA_10 PF12846.2 gi|345133556|ref|YP_004821347.1| - 3.1e-10 39.9 0.8 8.1e-10 38.6 0.0 1.9 2 1 0 2 2 2 1 AAA-like domain CagE_TrbE_VirB PF03135.9 gi|345133556|ref|YP_004821347.1| - 4.3e-07 29.8 0.1 8.9e-07 28.8 0.0 1.4 1 1 0 1 1 1 1 CagE, TrbE, VirB family, component of type IV transporter system DUF4355 PF14265.1 gi|345133556|ref|YP_004821347.1| - 0.13 12.2 2.2 0.29 11.0 1.5 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4355) Zn_Tnp_IS1595 PF12760.2 gi|345133557|ref|YP_004821348.1| - 0.00014 21.5 3.3 0.012 15.4 0.0 3.1 2 1 1 3 3 3 1 Transposase zinc-ribbon domain DZR PF12773.2 gi|345133557|ref|YP_004821348.1| - 0.00016 21.3 10.9 0.00035 20.3 7.6 1.5 1 1 0 1 1 1 1 Double zinc ribbon DnaJ_CXXCXGXG PF00684.14 gi|345133557|ref|YP_004821348.1| - 0.00081 19.3 8.2 0.0015 18.5 5.7 1.4 1 0 0 1 1 1 1 DnaJ central domain HypA PF01155.14 gi|345133557|ref|YP_004821348.1| - 0.0043 16.7 6.9 0.054 13.1 0.2 2.1 1 1 1 2 2 2 2 Hydrogenase expression/synthesis hypA family NMD3 PF04981.8 gi|345133557|ref|YP_004821348.1| - 0.049 12.7 0.5 0.049 12.7 0.4 1.4 1 1 0 1 1 1 0 NMD3 family PyrI_C PF02748.10 gi|345133557|ref|YP_004821348.1| - 0.056 12.8 0.1 0.42 10.0 0.0 2.0 2 0 0 2 2 2 0 Aspartate carbamoyltransferase regulatory chain, metal binding domain DUF4379 PF14311.1 gi|345133557|ref|YP_004821348.1| - 0.08 12.7 8.8 0.37 10.6 0.5 3.2 2 1 2 4 4 4 0 Domain of unknown function (DUF4379) zf-MYND PF01753.13 gi|345133557|ref|YP_004821348.1| - 0.09 12.6 6.5 2.4 8.1 0.1 2.2 2 0 0 2 2 2 0 MYND finger Cytochrome_C7 PF14522.1 gi|345133557|ref|YP_004821348.1| - 0.15 11.7 7.5 0.51 10.0 5.3 1.9 1 1 0 1 1 1 0 Cytochrome c7 Spt4 PF06093.8 gi|345133557|ref|YP_004821348.1| - 0.26 11.1 2.4 0.48 10.3 0.1 2.1 2 0 0 2 2 2 0 Spt4/RpoE2 zinc finger DUF1451 PF07295.6 gi|345133557|ref|YP_004821348.1| - 0.33 10.7 6.3 4.3 7.0 0.3 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1451) zf-C4pol PF14260.1 gi|345133557|ref|YP_004821348.1| - 0.82 9.7 5.8 11 6.0 4.0 2.2 1 1 0 1 1 1 0 C4-type zinc-finger of DNA polymerase delta zf-C3HC4_3 PF13920.1 gi|345133557|ref|YP_004821348.1| - 0.9 9.2 7.9 6 6.6 1.1 2.2 2 0 0 2 2 2 0 Zinc finger, C3HC4 type (RING finger) Terminase_GpA PF05876.7 gi|345133557|ref|YP_004821348.1| - 0.95 7.7 4.1 10 4.3 2.3 2.2 1 1 1 2 2 2 0 Phage terminase large subunit (GpA) Copper-fist PF00649.13 gi|345133557|ref|YP_004821348.1| - 1.1 8.5 4.6 0.24 10.6 0.3 2.0 2 0 0 2 2 2 0 Copper fist DNA binding domain DUF2072 PF09845.4 gi|345133557|ref|YP_004821348.1| - 1.6 8.6 7.0 1.6 8.6 0.3 2.2 1 1 1 2 2 2 0 Zn-ribbon containing protein (DUF2072) zf-UBP PF02148.14 gi|345133557|ref|YP_004821348.1| - 1.7 8.8 6.0 7.1 6.8 1.0 2.4 2 1 0 2 2 2 0 Zn-finger in ubiquitin-hydrolases and other protein Cytochrom_c3_2 PF14537.1 gi|345133557|ref|YP_004821348.1| - 2.1 8.7 8.8 6.8 7.1 6.1 1.8 1 1 0 1 1 1 0 Cytochrome c3 Nudix_N_2 PF14803.1 gi|345133557|ref|YP_004821348.1| - 2.2 8.0 11.8 5.7 6.7 0.3 4.0 4 0 0 4 4 4 0 Nudix N-terminal Ribosomal_L37e PF01907.14 gi|345133557|ref|YP_004821348.1| - 2.3 8.0 7.5 4.4 7.1 0.2 2.6 2 1 0 2 2 2 0 Ribosomal protein L37e NCD3G PF07562.9 gi|345133557|ref|YP_004821348.1| - 2.6 7.8 9.0 4.4 7.0 0.9 2.3 2 0 0 2 2 2 0 Nine Cysteines Domain of family 3 GPCR zf-ribbon_3 PF13248.1 gi|345133557|ref|YP_004821348.1| - 3.5 6.9 14.3 0.32 10.2 1.6 2.5 2 1 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|345133557|ref|YP_004821348.1| - 8.7 5.9 17.6 2.1 7.9 2.6 2.3 2 0 0 2 2 2 0 zinc-ribbon domain HTH_24 PF13412.1 gi|345133559|ref|YP_004821350.1| - 0.064 12.6 0.0 0.21 10.9 0.0 1.8 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.5 gi|345133559|ref|YP_004821350.1| - 0.15 11.6 0.0 0.23 11.0 0.0 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain UPF0150 PF03681.10 gi|345133561|ref|YP_004821352.1| - 1.5e-05 24.5 0.1 2.5e-05 23.8 0.0 1.4 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0150) XhoI PF04555.8 gi|345133562|ref|YP_004821353.1| - 2.2e-64 216.5 0.0 2.6e-64 216.2 0.0 1.0 1 0 0 1 1 1 1 Restriction endonuclease XhoI