#                                                                           --- full sequence ---- --- best 1 domain ---- --- domain number estimation ----
# target name        accession  query name                       accession    E-value  score  bias   E-value  score  bias   exp reg clu  ov env dom rep inc description of target
#------------------- ----------             -------------------- ---------- --------- ------ ----- --------- ------ -----   --- --- --- --- --- --- --- --- ---------------------
Peptidase_M24	PF00557.24	gi|345004011|ref|YP_004806864.1|	-	3.4e-08	33.4	1.2	1.2e-07	31.7	1.2	1.8	1	1	0	1	1	1	1	Metallopeptidase	family	M24
PTA_PTB	PF01515.19	gi|345004012|ref|YP_004806865.1|	-	6.2e-96	321.5	0.4	8.6e-96	321.0	0.4	1.2	1	0	0	1	1	1	1	Phosphate	acetyl/butaryl	transferase
malic	PF00390.19	gi|345004012|ref|YP_004806865.1|	-	3.8e-31	108.3	0.1	7.3e-29	100.9	0.1	2.6	1	1	0	1	1	1	1	Malic	enzyme,	N-terminal	domain
Malic_M	PF03949.15	gi|345004012|ref|YP_004806865.1|	-	6.4e-21	74.8	0.9	2.3e-20	73.0	0.4	2.2	2	1	0	2	2	2	1	Malic	enzyme,	NAD	binding	domain
SBP_bac_5	PF00496.22	gi|345004014|ref|YP_004806867.1|	-	7.5e-64	216.0	0.0	9.6e-64	215.7	0.0	1.1	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	proteins,	family	5	Middle
TAT_signal	PF10518.9	gi|345004014|ref|YP_004806867.1|	-	1.5e-06	27.8	5.9	2.4e-06	27.1	5.9	1.4	1	0	0	1	1	1	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
UCR_Fe-S_N	PF10399.9	gi|345004014|ref|YP_004806867.1|	-	0.0015	17.8	1.1	0.003	16.9	1.1	1.4	1	0	0	1	1	1	1	Ubiquitinol-cytochrome	C	reductase	Fe-S	subunit	TAT	signal
Pertactin	PF03212.14	gi|345004014|ref|YP_004806867.1|	-	0.17	11.8	2.4	7.1	6.6	0.2	2.7	2	1	0	3	3	3	0	Pertactin
BPD_transp_1	PF00528.22	gi|345004015|ref|YP_004806868.1|	-	1.9e-42	145.1	13.0	3.8e-42	144.1	13.0	1.5	1	0	0	1	1	1	1	Binding-protein-dependent	transport	system	inner	membrane	component
MIG-14_Wnt-bd	PF06664.12	gi|345004015|ref|YP_004806868.1|	-	0.0012	18.1	0.6	0.46	9.6	0.2	2.3	1	1	0	2	2	2	2	Wnt-binding	factor	required	for	Wnt	secretion
DUF5608	PF18356.1	gi|345004015|ref|YP_004806868.1|	-	0.091	12.8	0.4	0.22	11.5	0.4	1.7	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF5608)
Sigma_reg_N	PF13800.6	gi|345004015|ref|YP_004806868.1|	-	4	7.8	5.0	36	4.7	0.1	3.4	4	0	0	4	4	4	0	Sigma	factor	regulator	N-terminal
BPD_transp_1	PF00528.22	gi|345004016|ref|YP_004806869.1|	-	1e-30	106.9	11.5	1e-30	106.9	11.5	1.8	2	0	0	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
OppC_N	PF12911.7	gi|345004016|ref|YP_004806869.1|	-	4.1e-09	36.3	3.0	4.9e-09	36.0	0.1	2.5	2	0	0	2	2	2	1	N-terminal	TM	domain	of	oligopeptide	transport	permease	C
HTH_23	PF13384.6	gi|345004016|ref|YP_004806869.1|	-	0.075	12.9	0.2	4.9	7.1	0.0	2.4	2	0	0	2	2	2	0	Homeodomain-like	domain
ABC_tran	PF00005.27	gi|345004017|ref|YP_004806870.1|	-	5.4e-23	82.0	0.0	1.7e-22	80.4	0.0	1.8	1	1	0	1	1	1	1	ABC	transporter
oligo_HPY	PF08352.12	gi|345004017|ref|YP_004806870.1|	-	2.6e-17	63.1	0.0	5e-17	62.2	0.0	1.5	1	0	0	1	1	1	1	Oligopeptide/dipeptide	transporter,	C-terminal	region
AAA_21	PF13304.6	gi|345004017|ref|YP_004806870.1|	-	9.7e-06	25.6	2.2	0.00026	20.9	0.1	2.9	1	1	1	3	3	3	1	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_22	PF13401.6	gi|345004017|ref|YP_004806870.1|	-	6.1e-05	23.3	0.7	0.14	12.5	0.1	2.4	1	1	0	2	2	2	2	AAA	domain
AAA_29	PF13555.6	gi|345004017|ref|YP_004806870.1|	-	0.043	13.5	0.0	0.079	12.7	0.0	1.4	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
SMC_N	PF02463.19	gi|345004017|ref|YP_004806870.1|	-	0.045	13.2	0.1	2.2	7.7	0.0	2.1	2	0	0	2	2	2	0	RecF/RecN/SMC	N	terminal	domain
DUF87	PF01935.17	gi|345004017|ref|YP_004806870.1|	-	0.12	12.4	0.0	0.28	11.2	0.0	1.5	1	0	0	1	1	1	0	Helicase	HerA,	central	domain
ABC_tran	PF00005.27	gi|345004018|ref|YP_004806871.1|	-	3.7e-29	102.0	0.0	1.5e-28	100.0	0.0	1.9	1	1	0	1	1	1	1	ABC	transporter
oligo_HPY	PF08352.12	gi|345004018|ref|YP_004806871.1|	-	4.8e-18	65.4	0.1	9.3e-18	64.5	0.1	1.5	1	0	0	1	1	1	1	Oligopeptide/dipeptide	transporter,	C-terminal	region
AAA_22	PF13401.6	gi|345004018|ref|YP_004806871.1|	-	0.00016	21.9	0.1	0.1	12.9	0.0	2.5	2	0	0	2	2	2	2	AAA	domain
AAA_21	PF13304.6	gi|345004018|ref|YP_004806871.1|	-	0.00022	21.2	0.0	0.046	13.5	0.0	2.2	2	0	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|345004018|ref|YP_004806871.1|	-	0.012	15.0	0.0	0.2	11.0	0.0	2.1	2	0	0	2	2	2	0	RecF/RecN/SMC	N	terminal	domain
AAA_16	PF13191.6	gi|345004018|ref|YP_004806871.1|	-	0.021	15.2	0.1	0.056	13.8	0.0	1.9	2	0	0	2	2	2	0	AAA	ATPase	domain
AAA_5	PF07728.14	gi|345004018|ref|YP_004806871.1|	-	0.1	12.6	0.1	2.1	8.3	0.1	2.4	2	0	0	2	2	2	0	AAA	domain	(dynein-related	subfamily)
PRK	PF00485.18	gi|345004018|ref|YP_004806871.1|	-	0.13	12.0	0.0	0.23	11.2	0.0	1.4	1	0	0	1	1	1	0	Phosphoribulokinase	/	Uridine	kinase	family
AIG1	PF04548.16	gi|345004018|ref|YP_004806871.1|	-	0.19	11.0	0.1	0.3	10.4	0.1	1.3	1	0	0	1	1	1	0	AIG1	family
CBS	PF00571.28	gi|345004019|ref|YP_004806872.1|	-	1.6e-27	95.7	6.3	2.7e-13	50.1	0.6	2.1	2	0	0	2	2	2	2	CBS	domain
PUA_3	PF17785.1	gi|345004019|ref|YP_004806872.1|	-	0.0078	16.0	0.2	0.2	11.5	0.0	2.2	2	0	0	2	2	2	1	PUA-like	domain
GCV_T_C	PF08669.11	gi|345004019|ref|YP_004806872.1|	-	0.077	12.9	0.0	2.4	8.2	0.0	2.3	2	0	0	2	2	2	0	Glycine	cleavage	T-protein	C-terminal	barrel	domain
DUF3659	PF12396.8	gi|345004019|ref|YP_004806872.1|	-	0.25	11.3	2.1	0.4	10.6	0.5	2.1	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF3659)
EamA	PF00892.20	gi|345004020|ref|YP_004806873.1|	-	2.7e-36	124.7	32.6	5.1e-18	65.6	13.9	2.0	2	0	0	2	2	2	2	EamA-like	transporter	family
DUF4148	PF13663.6	gi|345004020|ref|YP_004806873.1|	-	2.5	8.3	6.0	12	6.2	0.0	3.8	4	1	1	5	5	5	0	Domain	of	unknown	function	(DUF4148)
DUF1684	PF07920.11	gi|345004021|ref|YP_004806874.1|	-	3.8e-48	163.3	0.2	5.5e-48	162.8	0.2	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1684)
DNA_pol_B	PF00136.21	gi|345004021|ref|YP_004806874.1|	-	0.18	10.5	0.0	0.23	10.1	0.0	1.1	1	0	0	1	1	1	0	DNA	polymerase	family	B
FmdA_AmdA	PF03069.15	gi|345004022|ref|YP_004806875.1|	-	8.2e-61	205.9	0.0	7.9e-59	199.4	0.0	2.0	1	1	0	1	1	1	1	Acetamidase/Formamidase	family
TF_Zn_Ribbon	PF08271.12	gi|345004022|ref|YP_004806875.1|	-	0.017	14.6	1.1	0.017	14.6	1.1	2.0	2	0	0	2	2	2	0	TFIIB	zinc-binding
DZR	PF12773.7	gi|345004022|ref|YP_004806875.1|	-	0.056	13.5	0.2	0.11	12.6	0.2	1.4	1	0	0	1	1	1	0	Double	zinc	ribbon
zinc_ribbon_2	PF13240.6	gi|345004022|ref|YP_004806875.1|	-	0.4	10.5	1.5	8.9	6.2	0.0	2.4	2	0	0	2	2	2	0	zinc-ribbon	domain
zf-ribbon_3	PF13248.6	gi|345004022|ref|YP_004806875.1|	-	0.46	10.0	2.5	13	5.4	0.2	2.4	2	0	0	2	2	2	0	zinc-ribbon	domain
zinc_ribbon_4	PF13717.6	gi|345004022|ref|YP_004806875.1|	-	0.52	10.3	2.8	7.1	6.6	0.2	2.3	1	1	1	2	2	2	0	zinc-ribbon	domain
zinc_ribbon_5	PF13719.6	gi|345004022|ref|YP_004806875.1|	-	0.97	9.2	2.3	3	7.7	2.3	1.7	1	1	0	1	1	1	0	zinc-ribbon	domain
zf-tcix	PF14952.6	gi|345004022|ref|YP_004806875.1|	-	1.2	8.8	2.8	13	5.5	0.2	2.2	2	0	0	2	2	2	0	Putative	treble-clef,	zinc-finger,	Zn-binding
DNA_RNApol_7kD	PF03604.13	gi|345004022|ref|YP_004806875.1|	-	1.7	8.4	4.4	4.1	7.2	0.1	2.3	2	0	0	2	2	2	0	DNA	directed	RNA	polymerase,	7	kDa	subunit
UPF0547	PF10571.9	gi|345004022|ref|YP_004806875.1|	-	1.9	8.7	6.3	1.6	8.9	0.5	2.5	2	0	0	2	2	2	0	Uncharacterised	protein	family	UPF0547
Fic_N	PF13784.6	gi|345004023|ref|YP_004806876.1|	-	1.9e-23	82.3	0.0	3.3e-23	81.5	0.0	1.4	1	0	0	1	1	1	1	Fic/DOC	family	N-terminal
Fic	PF02661.18	gi|345004023|ref|YP_004806876.1|	-	1.8e-18	67.2	0.0	5.7e-18	65.6	0.0	1.8	2	0	0	2	2	2	1	Fic/DOC	family
TrmB	PF01978.19	gi|345004023|ref|YP_004806876.1|	-	1.6e-05	24.7	1.0	0.00021	21.1	0.1	2.4	2	0	0	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_13	PF11972.8	gi|345004023|ref|YP_004806876.1|	-	0.0012	18.8	0.0	0.0038	17.3	0.0	1.8	1	0	0	1	1	1	1	HTH	DNA	binding	domain
MarR_2	PF12802.7	gi|345004023|ref|YP_004806876.1|	-	0.0022	17.8	0.3	0.004	17.0	0.3	1.4	1	0	0	1	1	1	1	MarR	family
HTH_29	PF13551.6	gi|345004023|ref|YP_004806876.1|	-	0.016	15.2	0.1	0.045	13.8	0.1	1.7	1	0	0	1	1	1	0	Winged	helix-turn	helix
DUF3038	PF11237.8	gi|345004023|ref|YP_004806876.1|	-	0.019	15.0	0.3	0.57	10.2	0.1	2.2	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3038)
HTH_24	PF13412.6	gi|345004023|ref|YP_004806876.1|	-	0.04	13.5	0.0	0.069	12.7	0.0	1.4	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
GntR	PF00392.21	gi|345004023|ref|YP_004806876.1|	-	0.063	12.9	0.6	0.25	11.0	0.1	2.1	2	0	0	2	2	2	0	Bacterial	regulatory	proteins,	gntR	family
DUF4172	PF13776.6	gi|345004023|ref|YP_004806876.1|	-	0.077	13.3	0.0	0.16	12.4	0.0	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4172)
HTH_17	PF12728.7	gi|345004023|ref|YP_004806876.1|	-	0.11	12.7	0.1	0.26	11.5	0.1	1.6	1	0	0	1	1	1	0	Helix-turn-helix	domain
Methyltransf_23	PF13489.6	gi|345004024|ref|YP_004806877.1|	-	1.7e-05	24.8	0.0	2.9e-05	24.0	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.12	gi|345004024|ref|YP_004806877.1|	-	2.4e-05	25.0	0.0	6.1e-05	23.7	0.0	1.8	1	0	0	1	1	1	1	Methyltransferase	domain
Rsm22	PF09243.10	gi|345004024|ref|YP_004806877.1|	-	0.00055	19.3	0.0	0.00083	18.7	0.0	1.2	1	0	0	1	1	1	1	Mitochondrial	small	ribosomal	subunit	Rsm22
PDH	PF02153.17	gi|345004025|ref|YP_004806878.1|	-	9e-10	38.0	0.1	3.4e-09	36.1	0.1	1.8	1	1	0	1	1	1	1	Prephenate	dehydrogenase
Creatinase_N	PF01321.18	gi|345004025|ref|YP_004806878.1|	-	0.023	15.4	0.5	0.11	13.2	0.0	2.0	2	0	0	2	2	2	0	Creatinase/Prolidase	N-terminal	domain
TrbH	PF07283.11	gi|345004025|ref|YP_004806878.1|	-	0.077	13.2	0.0	0.15	12.2	0.0	1.5	1	0	0	1	1	1	0	Conjugal	transfer	protein	TrbH
F420_oxidored	PF03807.17	gi|345004025|ref|YP_004806878.1|	-	0.099	13.2	0.0	0.47	11.1	0.0	2.2	2	0	0	2	2	2	0	NADP	oxidoreductase	coenzyme	F420-dependent
Peptidase_M24	PF00557.24	gi|345004026|ref|YP_004806879.1|	-	1.2e-44	152.5	1.4	1.4e-44	152.3	0.7	1.4	2	0	0	2	2	2	1	Metallopeptidase	family	M24
Creatinase_N	PF01321.18	gi|345004026|ref|YP_004806879.1|	-	5.9e-06	27.0	0.1	1.1e-05	26.1	0.1	1.5	1	0	0	1	1	1	1	Creatinase/Prolidase	N-terminal	domain
DUF1100	PF06500.11	gi|345004026|ref|YP_004806879.1|	-	0.038	12.8	0.0	0.055	12.3	0.0	1.2	1	0	0	1	1	1	0	Alpha/beta	hydrolase	of	unknown	function	(DUF1100)
DUF19	PF01579.18	gi|345004026|ref|YP_004806879.1|	-	0.18	11.6	0.0	0.3	10.9	0.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF19)
Diphthamide_syn	PF01866.17	gi|345004027|ref|YP_004806880.1|	-	1.4e-78	264.4	0.0	1.8e-78	264.0	0.0	1.1	1	0	0	1	1	1	1	Putative	diphthamide	synthesis	protein
GTP-bdg_N	PF13167.6	gi|345004027|ref|YP_004806880.1|	-	0.0029	18.3	0.0	0.12	13.1	0.0	2.3	1	1	1	2	2	2	1	GTP-binding	GTPase	N-terminal
Fe-ADH_2	PF13685.6	gi|345004027|ref|YP_004806880.1|	-	0.14	11.8	0.0	0.32	10.6	0.0	1.5	1	1	0	1	1	1	0	Iron-containing	alcohol	dehydrogenase
Acetyltransf_1	PF00583.25	gi|345004029|ref|YP_004806882.1|	-	3.8e-11	43.2	0.0	4.6e-11	43.0	0.0	1.1	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_10	PF13673.7	gi|345004029|ref|YP_004806882.1|	-	4.5e-10	39.6	0.0	5.7e-10	39.2	0.0	1.1	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_7	PF13508.7	gi|345004029|ref|YP_004806882.1|	-	2e-09	37.7	0.0	2.6e-09	37.4	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_3	PF13302.7	gi|345004029|ref|YP_004806882.1|	-	2.2e-07	31.6	0.0	2.6e-07	31.4	0.0	1.1	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
FR47	PF08445.10	gi|345004029|ref|YP_004806882.1|	-	0.00099	19.0	0.0	0.0014	18.5	0.0	1.3	1	0	0	1	1	1	1	FR47-like	protein
Acetyltransf_4	PF13420.7	gi|345004029|ref|YP_004806882.1|	-	0.06	13.5	0.0	0.069	13.3	0.0	1.2	1	0	0	1	1	1	0	Acetyltransferase	(GNAT)	domain
Trypsin_2	PF13365.6	gi|345004030|ref|YP_004806883.1|	-	1.7e-28	100.4	3.5	3e-28	99.6	3.5	1.4	1	0	0	1	1	1	1	Trypsin-like	peptidase	domain
PDZ_2	PF13180.6	gi|345004030|ref|YP_004806883.1|	-	4.3e-12	46.2	0.1	8.4e-12	45.2	0.1	1.5	1	0	0	1	1	1	1	PDZ	domain
Trypsin	PF00089.26	gi|345004030|ref|YP_004806883.1|	-	7.5e-12	45.5	1.3	2.1e-11	44.1	1.3	1.6	1	1	0	1	1	1	1	Trypsin
TAT_signal	PF10518.9	gi|345004030|ref|YP_004806883.1|	-	0.0039	17.0	4.9	0.013	15.3	4.9	2.0	1	0	0	1	1	1	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
PDZ_6	PF17820.1	gi|345004030|ref|YP_004806883.1|	-	0.021	14.7	0.0	0.065	13.1	0.0	1.9	1	0	0	1	1	1	0	PDZ	domain
Tricorn_PDZ	PF14685.6	gi|345004030|ref|YP_004806883.1|	-	0.056	13.4	0.0	0.14	12.1	0.0	1.7	1	0	0	1	1	1	0	Tricorn	protease	PDZ	domain
DUF2437	PF10370.9	gi|345004030|ref|YP_004806883.1|	-	0.057	14.3	0.5	0.38	11.7	0.5	2.5	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF2437)
Pico_P2A	PF00947.19	gi|345004030|ref|YP_004806883.1|	-	0.12	12.4	0.0	0.3	11.1	0.0	1.6	1	0	0	1	1	1	0	Picornavirus	core	protein	2A
4HBT	PF03061.22	gi|345004031|ref|YP_004806884.1|	-	1.5e-15	57.2	0.1	2.2e-15	56.8	0.1	1.2	1	0	0	1	1	1	1	Thioesterase	superfamily
DUF604	PF04646.12	gi|345004031|ref|YP_004806884.1|	-	0.072	12.5	0.0	0.097	12.0	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function,	DUF604
AstE_AspA	PF04952.14	gi|345004032|ref|YP_004806885.1|	-	2.4e-62	210.7	0.0	3e-62	210.4	0.0	1.0	1	0	0	1	1	1	1	Succinylglutamate	desuccinylase	/	Aspartoacylase	family
DNase-RNase	PF02577.14	gi|345004033|ref|YP_004806886.1|	-	1e-34	119.0	0.0	1.2e-34	118.8	0.0	1.0	1	0	0	1	1	1	1	Bifunctional	nuclease
DUF555	PF04475.12	gi|345004034|ref|YP_004806887.1|	-	3.6e-32	110.7	0.1	4.4e-32	110.4	0.1	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF555)
UPF0058	PF01893.16	gi|345004035|ref|YP_004806888.1|	-	2e-17	63.3	0.0	2e-17	63.2	0.0	1.0	1	0	0	1	1	1	1	Uncharacterised	protein	family	UPF0058
UDPGP	PF01704.18	gi|345004035|ref|YP_004806888.1|	-	0.15	10.6	0.0	0.16	10.6	0.0	1.0	1	0	0	1	1	1	0	UTP--glucose-1-phosphate	uridylyltransferase
Hexapep	PF00132.24	gi|345004036|ref|YP_004806889.1|	-	1.6e-08	34.0	2.3	3e-07	29.9	0.1	2.6	3	0	0	3	3	3	2	Bacterial	transferase	hexapeptide	(six	repeats)
Hexapep_2	PF14602.6	gi|345004036|ref|YP_004806889.1|	-	1.2e-07	31.4	0.4	1.2e-07	31.4	0.4	2.8	3	0	0	3	3	3	1	Hexapeptide	repeat	of	succinyl-transferase
MS_channel	PF00924.18	gi|345004037|ref|YP_004806890.1|	-	3.6e-16	59.4	2.3	8e-16	58.2	2.3	1.6	1	0	0	1	1	1	1	Mechanosensitive	ion	channel
TM_helix	PF05552.12	gi|345004037|ref|YP_004806890.1|	-	3.7e-05	23.6	0.0	3.7e-05	23.6	0.0	3.5	4	0	0	4	4	4	2	Conserved	TM	helix
DisA_N	PF02457.16	gi|345004038|ref|YP_004806891.1|	-	9.4e-21	73.6	0.0	1.9e-20	72.6	0.0	1.5	1	0	0	1	1	1	1	DisA	bacterial	checkpoint	controller	nucleotide-binding
AI-2E_transport	PF01594.16	gi|345004039|ref|YP_004806892.1|	-	5e-23	81.8	31.2	7.3e-23	81.2	31.2	1.2	1	0	0	1	1	1	1	AI-2E	family	transporter
FBPase	PF00316.20	gi|345004041|ref|YP_004806894.1|	-	1.3e-24	86.8	0.8	3.8e-24	85.2	0.3	1.8	2	0	0	2	2	2	1	Fructose-1-6-bisphosphatase,	N-terminal	domain
Inositol_P	PF00459.25	gi|345004041|ref|YP_004806894.1|	-	1.2e-05	25.0	0.2	2.6e-05	23.9	0.2	1.7	1	1	0	1	1	1	1	Inositol	monophosphatase	family
DeoC	PF01791.9	gi|345004042|ref|YP_004806895.1|	-	3.5e-39	134.8	0.2	4.2e-39	134.6	0.2	1.1	1	0	0	1	1	1	1	DeoC/LacD	family	aldolase
AP_endonuc_2	PF01261.24	gi|345004042|ref|YP_004806895.1|	-	0.082	12.3	0.0	0.15	11.4	0.0	1.6	1	1	0	1	1	1	0	Xylose	isomerase-like	TIM	barrel
HHH_5	PF14520.6	gi|345004043|ref|YP_004806896.1|	-	1.6e-09	38.2	0.0	1.8e-05	25.2	0.0	2.6	2	0	0	2	2	2	2	Helix-hairpin-helix	domain
DUF4332	PF14229.6	gi|345004043|ref|YP_004806896.1|	-	0.0025	18.0	0.0	0.007	16.6	0.0	1.8	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4332)
3HCDH_N	PF02737.18	gi|345004044|ref|YP_004806897.1|	-	2.5e-60	203.5	0.6	3.3e-60	203.1	0.6	1.1	1	0	0	1	1	1	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
3HCDH	PF00725.22	gi|345004044|ref|YP_004806897.1|	-	2.8e-34	117.6	0.1	4e-33	113.9	0.0	2.4	2	0	0	2	2	2	1	3-hydroxyacyl-CoA	dehydrogenase,	C-terminal	domain
NAD_binding_2	PF03446.15	gi|345004044|ref|YP_004806897.1|	-	0.0015	18.8	1.4	0.0028	17.8	1.3	1.7	1	1	0	1	1	1	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
2-Hacid_dh_C	PF02826.19	gi|345004044|ref|YP_004806897.1|	-	0.0036	16.7	0.1	0.0063	15.9	0.1	1.4	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
NAD_Gly3P_dh_N	PF01210.23	gi|345004044|ref|YP_004806897.1|	-	0.017	15.1	0.1	0.033	14.2	0.0	1.5	1	1	0	1	1	1	0	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
F420_oxidored	PF03807.17	gi|345004044|ref|YP_004806897.1|	-	0.019	15.6	1.2	0.081	13.5	0.8	2.2	2	1	0	2	2	2	0	NADP	oxidoreductase	coenzyme	F420-dependent
UDPG_MGDP_dh_N	PF03721.14	gi|345004044|ref|YP_004806897.1|	-	0.03	13.9	0.3	0.042	13.4	0.3	1.3	1	0	0	1	1	1	0	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
AlaDh_PNT_C	PF01262.21	gi|345004044|ref|YP_004806897.1|	-	0.076	12.3	0.5	0.13	11.6	0.5	1.3	1	0	0	1	1	1	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
XdhC_C	PF13478.6	gi|345004044|ref|YP_004806897.1|	-	0.095	13.2	0.6	0.13	12.7	0.6	1.5	1	1	0	1	1	1	0	XdhC	Rossmann	domain
Carboxyl_trans	PF01039.22	gi|345004045|ref|YP_004806898.1|	-	1.1e-123	413.6	0.1	1.5e-123	413.1	0.1	1.2	1	0	0	1	1	1	1	Carboxyl	transferase	domain
DoxX	PF07681.12	gi|345004046|ref|YP_004806899.1|	-	0.00017	22.1	7.9	0.00017	22.1	7.9	1.7	1	1	0	1	1	1	1	DoxX
MaoC_dehydratas	PF01575.19	gi|345004047|ref|YP_004806900.1|	-	4.4e-24	84.4	0.1	5.8e-24	84.0	0.1	1.1	1	0	0	1	1	1	1	MaoC	like	domain
MaoC_dehydrat_N	PF13452.6	gi|345004047|ref|YP_004806900.1|	-	0.039	14.1	0.1	0.11	12.6	0.1	1.6	1	1	0	1	1	1	0	N-terminal	half	of	MaoC	dehydratase
HpcH_HpaI	PF03328.14	gi|345004048|ref|YP_004806901.1|	-	1.2e-56	191.3	2.6	1.7e-56	190.9	2.6	1.2	1	0	0	1	1	1	1	HpcH/HpaI	aldolase/citrate	lyase	family
C-C_Bond_Lyase	PF15617.6	gi|345004048|ref|YP_004806901.1|	-	1.3e-11	44.2	0.1	2.4e-05	23.7	0.1	2.1	2	0	0	2	2	2	2	C-C_Bond_Lyase	of	the	TIM-Barrel	fold
PK	PF00224.21	gi|345004048|ref|YP_004806901.1|	-	6.8e-05	21.9	0.2	9.8e-05	21.4	0.2	1.3	1	0	0	1	1	1	1	Pyruvate	kinase,	barrel	domain
ELFV_dehydrog	PF00208.21	gi|345004049|ref|YP_004806902.1|	-	5.7e-71	239.1	0.0	7.8e-71	238.6	0.0	1.2	1	0	0	1	1	1	1	Glutamate/Leucine/Phenylalanine/Valine	dehydrogenase
ELFV_dehydrog_N	PF02812.18	gi|345004049|ref|YP_004806902.1|	-	1.6e-52	176.8	0.0	3.7e-52	175.6	0.0	1.6	2	0	0	2	2	2	1	Glu/Leu/Phe/Val	dehydrogenase,	dimerisation	domain
Oxidored_nitro	PF00148.19	gi|345004049|ref|YP_004806902.1|	-	0.064	12.0	0.0	0.087	11.5	0.0	1.2	1	0	0	1	1	1	0	Nitrogenase	component	1	type	Oxidoreductase
DMRL_synthase	PF00885.19	gi|345004050|ref|YP_004806903.1|	-	1.1e-32	112.8	1.2	1.2e-32	112.7	1.2	1.0	1	0	0	1	1	1	1	6,7-dimethyl-8-ribityllumazine	synthase
Aminotran_1_2	PF00155.21	gi|345004051|ref|YP_004806904.1|	-	1.3e-60	205.5	0.0	1.5e-60	205.3	0.0	1.0	1	0	0	1	1	1	1	Aminotransferase	class	I	and	II
Cys_Met_Meta_PP	PF01053.20	gi|345004051|ref|YP_004806904.1|	-	0.0011	17.6	0.0	0.002	16.8	0.0	1.3	1	0	0	1	1	1	1	Cys/Met	metabolism	PLP-dependent	enzyme
Aminotran_5	PF00266.19	gi|345004051|ref|YP_004806904.1|	-	0.0074	15.3	0.1	0.017	14.1	0.0	1.6	2	0	0	2	2	2	1	Aminotransferase	class-V
DegT_DnrJ_EryC1	PF01041.17	gi|345004051|ref|YP_004806904.1|	-	0.014	14.7	0.1	0.021	14.1	0.1	1.2	1	0	0	1	1	1	0	DegT/DnrJ/EryC1/StrS	aminotransferase	family
Beta_elim_lyase	PF01212.21	gi|345004051|ref|YP_004806904.1|	-	0.11	11.8	0.0	0.24	10.7	0.0	1.5	1	0	0	1	1	1	0	Beta-eliminating	lyase
NHase_beta	PF02211.15	gi|345004053|ref|YP_004806906.1|	-	1.1e-66	225.1	0.5	1.2e-66	224.9	0.5	1.0	1	0	0	1	1	1	1	Nitrile	hydratase	beta	subunit
Aldo_ket_red	PF00248.21	gi|345004054|ref|YP_004806907.1|	-	1.6e-70	237.6	0.0	2e-70	237.3	0.0	1.0	1	0	0	1	1	1	1	Aldo/keto	reductase	family
TPPK_C	PF12555.8	gi|345004055|ref|YP_004806908.1|	-	0.055	13.5	1.6	0.055	13.5	1.6	1.6	1	1	1	2	2	2	0	Thiamine	pyrophosphokinase	C	terminal
DPRP	PF04244.13	gi|345004056|ref|YP_004806909.1|	-	0.0027	17.6	0.0	0.0033	17.3	0.0	1.1	1	0	0	1	1	1	1	Deoxyribodipyrimidine	photo-lyase-related	protein
DUF5063	PF16702.5	gi|345004057|ref|YP_004806910.1|	-	0.032	14.6	0.0	0.042	14.2	0.0	1.2	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF5063)
Pyr_redox_2	PF07992.14	gi|345004058|ref|YP_004806911.1|	-	4.6e-39	134.4	1.2	5.5e-39	134.1	1.2	1.1	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox	PF00070.27	gi|345004058|ref|YP_004806911.1|	-	2.2e-13	50.6	0.1	2e-12	47.5	0.0	2.2	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_3	PF13738.6	gi|345004058|ref|YP_004806911.1|	-	5.9e-11	42.2	0.1	5.6e-08	32.4	0.0	2.7	2	1	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_binding_8	PF13450.6	gi|345004058|ref|YP_004806911.1|	-	0.0014	18.8	0.0	0.0065	16.7	0.0	2.1	2	0	0	2	2	2	1	NAD(P)-binding	Rossmann-like	domain
FAD_binding_2	PF00890.24	gi|345004058|ref|YP_004806911.1|	-	0.0085	15.2	2.0	0.063	12.4	0.1	2.8	3	0	0	3	3	3	1	FAD	binding	domain
NAD_binding_7	PF13241.6	gi|345004058|ref|YP_004806911.1|	-	0.0098	16.3	0.0	0.047	14.1	0.0	2.0	2	0	0	2	2	2	1	Putative	NAD(P)-binding
FAD_oxidored	PF12831.7	gi|345004058|ref|YP_004806911.1|	-	0.027	13.9	0.1	0.052	12.9	0.1	1.4	1	0	0	1	1	1	0	FAD	dependent	oxidoreductase
SH3_9	PF14604.6	gi|345004058|ref|YP_004806911.1|	-	0.07	13.0	0.2	0.55	10.1	0.0	2.3	2	0	0	2	2	2	0	Variant	SH3	domain
HI0933_like	PF03486.14	gi|345004058|ref|YP_004806911.1|	-	0.09	11.5	0.5	0.42	9.3	0.0	2.3	4	0	0	4	4	4	0	HI0933-like	protein
DUF357	PF04010.13	gi|345004059|ref|YP_004806912.1|	-	8.9e-31	105.8	0.1	1.1e-30	105.6	0.1	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF357)
Cas_Cas1	PF01867.16	gi|345004059|ref|YP_004806912.1|	-	0.041	13.0	0.0	0.048	12.8	0.0	1.1	1	0	0	1	1	1	0	CRISPR	associated	protein	Cas1
tRNA-synt_1e	PF01406.19	gi|345004060|ref|YP_004806913.1|	-	1.1e-103	346.7	0.3	3.6e-103	345.1	0.3	1.7	1	1	0	1	1	1	1	tRNA	synthetases	class	I	(C)	catalytic	domain
DALR_2	PF09190.11	gi|345004060|ref|YP_004806913.1|	-	3.8e-10	40.1	2.1	6.6e-10	39.3	0.8	2.0	2	0	0	2	2	2	1	DALR	domain
tRNA-synt_1g	PF09334.11	gi|345004060|ref|YP_004806913.1|	-	2.8e-09	36.2	0.0	0.0011	17.8	0.0	2.3	2	0	0	2	2	2	2	tRNA	synthetases	class	I	(M)
tRNA-synt_1f	PF01921.18	gi|345004060|ref|YP_004806913.1|	-	3.7e-09	36.0	0.0	7.2e-06	25.1	0.0	2.2	2	0	0	2	2	2	2	tRNA	synthetases	class	I	(K)
tRNA-synt_1	PF00133.22	gi|345004060|ref|YP_004806913.1|	-	0.0011	17.3	0.0	0.052	11.8	0.0	2.2	2	0	0	2	2	2	2	tRNA	synthetases	class	I	(I,	L,	M	and	V)
FTO_CTD	PF12934.7	gi|345004060|ref|YP_004806913.1|	-	0.0076	16.0	0.5	0.013	15.2	0.1	1.6	2	0	0	2	2	2	1	FTO	C-terminal	domain
Importin_rep_6	PF18829.1	gi|345004060|ref|YP_004806913.1|	-	0.17	12.0	1.6	0.28	11.3	0.3	2.1	2	0	0	2	2	2	0	Importin	repeat	6
DUF11	PF01345.18	gi|345004062|ref|YP_004806915.1|	-	0.0022	18.3	0.2	0.0054	17.0	0.2	1.7	1	1	0	1	1	1	1	Domain	of	unknown	function	DUF11
FixG_C	PF11614.8	gi|345004062|ref|YP_004806915.1|	-	0.013	15.7	0.2	0.55	10.5	0.0	2.2	1	1	1	2	2	2	0	IG-like	fold	at	C-terminal	of	FixG,	putative	oxidoreductase
fn3_5	PF06280.12	gi|345004062|ref|YP_004806915.1|	-	0.025	15.3	0.3	1.9	9.2	0.0	2.6	1	1	1	2	2	2	0	Fn3-like	domain
DUF3040	PF11239.8	gi|345004062|ref|YP_004806915.1|	-	0.064	13.5	4.9	0.17	12.2	4.9	1.7	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3040)
DUF756	PF05506.12	gi|345004062|ref|YP_004806915.1|	-	0.067	14.1	0.2	1.5	9.8	0.1	2.2	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF756)
DUF5325	PF17259.2	gi|345004062|ref|YP_004806915.1|	-	1	9.3	10.4	2.2	8.2	10.4	1.5	1	0	0	1	1	1	0	Family	of	unknown	function	(DUF5325)
HpcH_HpaI	PF03328.14	gi|345004063|ref|YP_004806916.1|	-	6.1e-45	153.0	0.1	7.5e-45	152.8	0.1	1.0	1	0	0	1	1	1	1	HpcH/HpaI	aldolase/citrate	lyase	family
bPH_3	PF14470.6	gi|345004064|ref|YP_004806917.1|	-	0.029	14.7	0.0	0.092	13.1	0.0	1.8	2	0	0	2	2	2	0	Bacterial	PH	domain
DUF2508	PF10704.9	gi|345004064|ref|YP_004806917.1|	-	0.077	13.2	0.3	0.14	12.3	0.3	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2508)
Epimerase	PF01370.21	gi|345004065|ref|YP_004806918.1|	-	2.6e-14	53.2	0.0	4.1e-14	52.6	0.0	1.3	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
NAD_binding_10	PF13460.6	gi|345004065|ref|YP_004806918.1|	-	1.4e-13	51.2	0.1	1.8e-13	50.8	0.1	1.2	1	0	0	1	1	1	1	NAD(P)H-binding
TrkA_N	PF02254.18	gi|345004065|ref|YP_004806918.1|	-	1.1e-09	38.6	0.1	2e-09	37.7	0.1	1.4	1	0	0	1	1	1	1	TrkA-N	domain
GDP_Man_Dehyd	PF16363.5	gi|345004065|ref|YP_004806918.1|	-	2.5e-06	27.1	0.1	1.3e-05	24.8	0.1	1.9	1	1	0	1	1	1	1	GDP-mannose	4,6	dehydratase
ApbA	PF02558.16	gi|345004065|ref|YP_004806918.1|	-	0.00013	21.6	0.0	0.00022	20.9	0.0	1.3	1	0	0	1	1	1	1	Ketopantoate	reductase	PanE/ApbA
3Beta_HSD	PF01073.19	gi|345004065|ref|YP_004806918.1|	-	0.00023	20.3	0.0	0.00052	19.1	0.0	1.6	2	0	0	2	2	2	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
F420_oxidored	PF03807.17	gi|345004065|ref|YP_004806918.1|	-	0.00047	20.7	0.1	0.00098	19.7	0.1	1.5	1	0	0	1	1	1	1	NADP	oxidoreductase	coenzyme	F420-dependent
Semialdhyde_dh	PF01118.24	gi|345004065|ref|YP_004806918.1|	-	0.0015	19.0	0.1	0.0025	18.3	0.1	1.3	1	0	0	1	1	1	1	Semialdehyde	dehydrogenase,	NAD	binding	domain
GFO_IDH_MocA	PF01408.22	gi|345004065|ref|YP_004806918.1|	-	0.0033	18.2	0.1	0.0058	17.4	0.1	1.4	1	0	0	1	1	1	1	Oxidoreductase	family,	NAD-binding	Rossmann	fold
UDPG_MGDP_dh_N	PF03721.14	gi|345004065|ref|YP_004806918.1|	-	0.0044	16.6	0.0	0.0059	16.2	0.0	1.2	1	0	0	1	1	1	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
Sacchrp_dh_NADP	PF03435.18	gi|345004065|ref|YP_004806918.1|	-	0.0046	17.2	0.1	0.0077	16.5	0.1	1.5	1	0	0	1	1	1	1	Saccharopine	dehydrogenase	NADP	binding	domain
RmlD_sub_bind	PF04321.17	gi|345004065|ref|YP_004806918.1|	-	0.014	14.5	0.2	0.085	11.9	0.2	2.0	1	1	0	1	1	1	0	RmlD	substrate	binding	domain
Pyr_redox	PF00070.27	gi|345004065|ref|YP_004806918.1|	-	0.017	15.7	0.2	0.029	14.9	0.2	1.4	1	0	0	1	1	1	0	Pyridine	nucleotide-disulphide	oxidoreductase
Rossmann-like	PF10727.9	gi|345004065|ref|YP_004806918.1|	-	0.023	14.5	0.9	0.05	13.5	0.8	1.6	1	1	0	1	1	1	0	Rossmann-like	domain
NAD_binding_2	PF03446.15	gi|345004065|ref|YP_004806918.1|	-	0.027	14.6	0.0	0.044	13.9	0.0	1.4	1	0	0	1	1	1	0	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
Shikimate_DH	PF01488.20	gi|345004065|ref|YP_004806918.1|	-	0.028	14.5	0.0	0.041	13.9	0.0	1.2	1	0	0	1	1	1	0	Shikimate	/	quinate	5-dehydrogenase
IlvN	PF07991.12	gi|345004065|ref|YP_004806918.1|	-	0.038	13.5	0.1	0.062	12.9	0.1	1.4	1	0	0	1	1	1	0	Acetohydroxy	acid	isomeroreductase,	NADPH-binding	domain
Pyr_redox_2	PF07992.14	gi|345004065|ref|YP_004806918.1|	-	0.055	12.7	0.1	0.075	12.2	0.1	1.2	1	0	0	1	1	1	0	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_binding_7	PF13241.6	gi|345004065|ref|YP_004806918.1|	-	0.063	13.7	0.2	0.11	12.9	0.2	1.4	1	0	0	1	1	1	0	Putative	NAD(P)-binding
2-Hacid_dh_C	PF02826.19	gi|345004065|ref|YP_004806918.1|	-	0.078	12.3	0.0	0.11	11.8	0.0	1.4	1	0	0	1	1	1	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
3HCDH_N	PF02737.18	gi|345004065|ref|YP_004806918.1|	-	0.084	12.8	0.2	0.12	12.2	0.2	1.2	1	0	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
T2SSF	PF00482.23	gi|345004071|ref|YP_004806924.1|	-	0.00031	20.7	2.1	0.0021	18.0	0.1	3.0	2	1	0	2	2	2	1	Type	II	secretion	system	(T2SS),	protein	F
T2SSE	PF00437.20	gi|345004072|ref|YP_004806925.1|	-	6e-33	114.1	0.0	9.7e-33	113.4	0.0	1.3	1	0	0	1	1	1	1	Type	II/IV	secretion	system	protein
AAA_7	PF12775.7	gi|345004072|ref|YP_004806925.1|	-	0.007	15.9	0.0	0.012	15.2	0.0	1.3	1	0	0	1	1	1	1	P-loop	containing	dynein	motor	region
AAA_16	PF13191.6	gi|345004072|ref|YP_004806925.1|	-	0.011	16.1	0.2	0.011	16.1	0.2	2.5	3	0	0	3	3	3	0	AAA	ATPase	domain
AAA_29	PF13555.6	gi|345004072|ref|YP_004806925.1|	-	0.023	14.4	1.6	0.027	14.2	0.2	1.8	2	0	0	2	2	2	0	P-loop	containing	region	of	AAA	domain
Zeta_toxin	PF06414.12	gi|345004072|ref|YP_004806925.1|	-	0.04	13.2	0.4	0.089	12.1	0.1	1.7	2	0	0	2	2	2	0	Zeta	toxin
AAA_23	PF13476.6	gi|345004072|ref|YP_004806925.1|	-	0.046	14.2	0.0	0.073	13.6	0.0	1.2	1	0	0	1	1	1	0	AAA	domain
ABC_tran	PF00005.27	gi|345004072|ref|YP_004806925.1|	-	0.054	14.0	0.0	0.11	13.0	0.0	1.5	1	0	0	1	1	1	0	ABC	transporter
ResIII	PF04851.15	gi|345004072|ref|YP_004806925.1|	-	0.062	13.3	0.0	0.1	12.6	0.0	1.2	1	0	0	1	1	1	0	Type	III	restriction	enzyme,	res	subunit
cobW	PF02492.19	gi|345004072|ref|YP_004806925.1|	-	0.087	12.4	0.0	0.14	11.7	0.0	1.4	1	0	0	1	1	1	0	CobW/HypB/UreG,	nucleotide-binding	domain
FtsK_SpoIIIE	PF01580.18	gi|345004072|ref|YP_004806925.1|	-	0.11	11.8	1.0	0.2	11.0	0.2	1.8	2	0	0	2	2	2	0	FtsK/SpoIIIE	family
AAA_25	PF13481.6	gi|345004072|ref|YP_004806925.1|	-	0.85	9.2	7.7	0.2	11.2	0.7	2.9	3	0	0	3	3	3	0	AAA	domain
RXLR	PF16810.5	gi|345004073|ref|YP_004806926.1|	-	0.27	11.7	1.5	0.33	11.4	1.5	1.2	1	0	0	1	1	1	0	RXLR	phytopathogen	effector	protein,	Avirulence	activity
NPV_P10	PF05531.12	gi|345004074|ref|YP_004806927.1|	-	0.0014	19.0	1.5	0.16	12.4	0.1	2.4	1	1	1	2	2	2	2	Nucleopolyhedrovirus	P10	protein
ABC_tran_CTD	PF16326.5	gi|345004074|ref|YP_004806927.1|	-	0.0017	18.6	5.6	0.024	14.8	2.5	2.8	1	1	2	3	3	3	1	ABC	transporter	C-terminal	domain
HSBP1	PF06825.12	gi|345004074|ref|YP_004806927.1|	-	0.0022	17.8	0.8	0.023	14.6	0.1	2.5	3	0	0	3	3	3	1	Heat	shock	factor	binding	protein	1
Fmp27_WPPW	PF10359.9	gi|345004074|ref|YP_004806927.1|	-	0.0064	15.4	0.1	0.0073	15.2	0.1	1.1	1	0	0	1	1	1	1	RNA	pol	II	promoter	Fmp27	protein	domain
MutS_III	PF05192.18	gi|345004074|ref|YP_004806927.1|	-	0.007	16.6	0.6	0.0072	16.6	0.6	1.1	1	0	0	1	1	1	1	MutS	domain	III
Spectrin	PF00435.21	gi|345004074|ref|YP_004806927.1|	-	0.022	15.2	0.8	0.13	12.7	0.1	2.1	2	0	0	2	2	2	0	Spectrin	repeat
HalX	PF08663.10	gi|345004074|ref|YP_004806927.1|	-	0.023	15.0	1.9	0.023	15.0	1.9	3.2	1	1	2	3	3	3	0	HalX	domain
Bclt	PF15318.6	gi|345004074|ref|YP_004806927.1|	-	0.029	14.2	0.4	0.035	13.9	0.4	1.2	1	0	0	1	1	1	0	Putative	Bcl-2	like	protein	of	testis
MscS_porin	PF12795.7	gi|345004074|ref|YP_004806927.1|	-	0.039	13.5	6.2	0.011	15.3	2.7	1.8	1	1	1	2	2	2	0	Mechanosensitive	ion	channel	porin	domain
APG6_N	PF17675.1	gi|345004074|ref|YP_004806927.1|	-	0.049	14.2	1.7	0.077	13.5	1.7	1.3	1	0	0	1	1	1	0	Apg6	coiled-coil	region
MRF_C1	PF13887.6	gi|345004074|ref|YP_004806927.1|	-	0.066	12.4	4.7	1.3	8.2	0.3	3.3	3	0	0	3	3	3	0	Myelin	gene	regulatory	factor	-C-terminal	domain	1
Uso1_p115_C	PF04871.13	gi|345004074|ref|YP_004806927.1|	-	0.082	13.3	4.9	0.89	9.9	0.7	2.2	2	0	0	2	2	2	0	Uso1	/	p115	like	vesicle	tethering	protein,	C	terminal	region
DUF1664	PF07889.12	gi|345004074|ref|YP_004806927.1|	-	0.084	12.9	0.2	0.14	12.2	0.2	1.4	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF1664)
Syntaxin-6_N	PF09177.11	gi|345004074|ref|YP_004806927.1|	-	0.087	13.4	4.4	0.75	10.4	3.1	2.3	1	1	1	2	2	2	0	Syntaxin	6,	N-terminal
DUF4988	PF16378.5	gi|345004074|ref|YP_004806927.1|	-	0.1	12.2	0.3	0.2	11.3	0.0	1.7	2	1	0	2	2	2	0	Domain	of	unknown	function
EccE	PF11203.8	gi|345004074|ref|YP_004806927.1|	-	0.11	12.9	6.0	0.35	11.2	6.0	2.0	1	1	0	1	1	1	0	Putative	type	VII	ESX	secretion	system	translocon,	EccE
FlaC_arch	PF05377.11	gi|345004074|ref|YP_004806927.1|	-	0.13	12.7	0.8	4.5	7.7	0.3	2.7	1	1	2	3	3	3	0	Flagella	accessory	protein	C	(FlaC)
Prefoldin_2	PF01920.20	gi|345004074|ref|YP_004806927.1|	-	0.13	12.2	2.0	4.2	7.4	0.3	2.7	1	1	1	2	2	2	0	Prefoldin	subunit
Tropomyosin_1	PF12718.7	gi|345004074|ref|YP_004806927.1|	-	0.2	11.8	5.3	0.28	11.3	3.6	1.9	1	1	0	1	1	1	0	Tropomyosin	like
Allexi_40kDa	PF05549.11	gi|345004074|ref|YP_004806927.1|	-	0.22	11.0	0.7	1.1	8.7	0.2	1.8	1	1	1	2	2	2	0	Allexivirus	40kDa	protein
HrpF	PF06266.12	gi|345004074|ref|YP_004806927.1|	-	0.28	11.5	5.9	0.16	12.3	2.1	2.2	1	1	0	2	2	2	0	HrpF	protein
AAA_25	PF13481.6	gi|345004074|ref|YP_004806927.1|	-	0.31	10.6	3.0	0.61	9.6	2.8	1.6	1	1	0	1	1	1	0	AAA	domain
DUF4140	PF13600.6	gi|345004074|ref|YP_004806927.1|	-	4.8	7.7	10.6	5.7	7.4	4.7	2.9	1	1	1	2	2	2	0	N-terminal	domain	of	unknown	function	(DUF4140)
Tubulin	PF00091.25	gi|345004075|ref|YP_004806928.1|	-	2.1e-26	93.4	0.1	6.2e-26	91.8	0.1	1.8	1	1	0	1	1	1	1	Tubulin/FtsZ	family,	GTPase	domain
Tubulin_2	PF13809.6	gi|345004075|ref|YP_004806928.1|	-	8.7e-05	21.9	0.1	0.00013	21.2	0.1	1.4	1	0	0	1	1	1	1	Tubulin	like
CinA	PF02464.17	gi|345004076|ref|YP_004806929.1|	-	3.9e-54	182.4	0.5	4.4e-54	182.2	0.5	1.0	1	0	0	1	1	1	1	Competence-damaged	protein
YdjM	PF04307.14	gi|345004077|ref|YP_004806930.1|	-	1.1e-11	44.4	6.0	1.1e-10	41.1	6.0	2.0	1	1	0	1	1	1	1	LexA-binding,	inner	membrane-associated	putative	hydrolase
Zn_dep_PLPC	PF00882.18	gi|345004077|ref|YP_004806930.1|	-	0.016	15.2	0.5	0.038	14.0	0.5	1.5	1	1	0	1	1	1	0	Zinc	dependent	phospholipase	C
PHP_C	PF13263.6	gi|345004078|ref|YP_004806931.1|	-	1.2e-15	56.9	0.0	2.5e-15	56.0	0.0	1.5	1	0	0	1	1	1	1	PHP-associated
zf-C2H2	PF00096.26	gi|345004079|ref|YP_004806932.1|	-	0.0031	17.9	0.2	0.23	12.0	0.0	2.3	2	0	0	2	2	2	1	Zinc	finger,	C2H2	type
FYVE	PF01363.21	gi|345004079|ref|YP_004806932.1|	-	0.0087	16.2	0.1	0.011	15.9	0.1	1.3	1	0	0	1	1	1	1	FYVE	zinc	finger
zf-C2H2_4	PF13894.6	gi|345004079|ref|YP_004806932.1|	-	0.066	14.1	0.4	5.3	8.2	0.0	2.4	2	0	0	2	2	2	0	C2H2-type	zinc	finger
MRNIP	PF15749.5	gi|345004079|ref|YP_004806932.1|	-	0.42	11.4	2.3	9.6	7.0	2.6	2.4	1	1	0	1	1	1	0	MRN-interacting	protein
Diphthami_syn_2	PF01902.17	gi|345004080|ref|YP_004806933.1|	-	3.1e-59	200.1	0.0	5.7e-59	199.3	0.0	1.4	1	1	0	1	1	1	1	Diphthamide	synthase
NUDIX	PF00293.28	gi|345004080|ref|YP_004806933.1|	-	0.015	15.3	1.4	0.031	14.3	1.4	1.7	1	0	0	1	1	1	0	NUDIX	domain
Methyltransf_24	PF13578.6	gi|345004080|ref|YP_004806933.1|	-	0.072	14.1	0.1	0.65	11.0	0.1	2.3	1	1	0	1	1	1	0	Methyltransferase	domain
QueC	PF06508.13	gi|345004080|ref|YP_004806933.1|	-	0.14	11.7	0.0	0.33	10.4	0.0	1.6	2	0	0	2	2	2	0	Queuosine	biosynthesis	protein	QueC
PAPS_reduct	PF01507.19	gi|345004081|ref|YP_004806934.1|	-	7.2e-19	68.5	0.0	3.8e-15	56.4	0.0	3.1	2	1	0	2	2	2	2	Phosphoadenosine	phosphosulfate	reductase	family
Diphthami_syn_2	PF01902.17	gi|345004081|ref|YP_004806934.1|	-	0.0025	17.3	0.0	0.012	15.2	0.0	1.9	2	0	0	2	2	2	1	Diphthamide	synthase
F_bP_aldolase	PF01116.20	gi|345004081|ref|YP_004806934.1|	-	0.095	12.2	0.0	0.16	11.4	0.0	1.3	1	0	0	1	1	1	0	Fructose-bisphosphate	aldolase	class-II
NA37	PF04245.13	gi|345004081|ref|YP_004806934.1|	-	0.14	11.6	0.0	0.21	11.0	0.0	1.2	1	0	0	1	1	1	0	37-kD	nucleoid-associated	bacterial	protein
HTH_10	PF04967.12	gi|345004082|ref|YP_004806935.1|	-	6.3e-19	67.5	0.0	9.6e-19	66.9	0.0	1.3	1	0	0	1	1	1	1	HTH	DNA	binding	domain
MarR_2	PF12802.7	gi|345004082|ref|YP_004806935.1|	-	0.015	15.1	0.0	0.48	10.3	0.0	2.5	2	0	0	2	2	2	0	MarR	family
HTH_Tnp_1_2	PF13022.6	gi|345004082|ref|YP_004806935.1|	-	0.16	12.2	0.0	0.25	11.5	0.0	1.2	1	0	0	1	1	1	0	Helix-turn-helix	of	insertion	element	transposase
ABC_tran	PF00005.27	gi|345004083|ref|YP_004806936.1|	-	1.6e-35	122.6	0.0	2.5e-35	122.0	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
TOBE_2	PF08402.10	gi|345004083|ref|YP_004806936.1|	-	1.1e-11	44.7	3.5	1.2e-11	44.6	0.9	2.4	1	1	1	2	2	2	1	TOBE	domain
AAA_21	PF13304.6	gi|345004083|ref|YP_004806936.1|	-	2.4e-07	30.9	0.3	0.0046	16.8	0.1	2.2	1	1	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|345004083|ref|YP_004806936.1|	-	1e-05	25.1	0.3	0.028	13.8	0.1	2.3	2	1	0	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
AAA_16	PF13191.6	gi|345004083|ref|YP_004806936.1|	-	0.00039	20.8	0.2	0.001	19.5	0.2	1.7	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_29	PF13555.6	gi|345004083|ref|YP_004806936.1|	-	0.0026	17.4	0.0	0.0059	16.3	0.0	1.5	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_22	PF13401.6	gi|345004083|ref|YP_004806936.1|	-	0.0029	17.9	0.8	0.034	14.4	0.3	2.2	1	1	1	2	2	2	1	AAA	domain
RsgA_GTPase	PF03193.16	gi|345004083|ref|YP_004806936.1|	-	0.016	15.1	0.0	0.033	14.1	0.0	1.5	1	0	0	1	1	1	0	RsgA	GTPase
AAA_30	PF13604.6	gi|345004083|ref|YP_004806936.1|	-	0.05	13.3	0.2	0.15	11.7	0.0	1.9	1	1	0	2	2	2	0	AAA	domain
AAA_33	PF13671.6	gi|345004083|ref|YP_004806936.1|	-	0.053	13.7	0.0	0.12	12.5	0.0	1.7	1	1	0	1	1	1	0	AAA	domain
Cytidylate_kin	PF02224.18	gi|345004083|ref|YP_004806936.1|	-	0.071	12.8	0.0	0.14	11.9	0.0	1.4	1	0	0	1	1	1	0	Cytidylate	kinase
AAA_23	PF13476.6	gi|345004083|ref|YP_004806936.1|	-	0.095	13.2	0.0	0.2	12.1	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
SbcCD_C	PF13558.6	gi|345004083|ref|YP_004806936.1|	-	0.099	12.9	0.2	1.3	9.3	0.2	2.4	1	1	0	1	1	1	0	Putative	exonuclease	SbcCD,	C	subunit
BPD_transp_1	PF00528.22	gi|345004084|ref|YP_004806937.1|	-	5.6e-14	52.3	18.8	5.6e-14	52.3	18.8	2.4	1	1	1	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
DUF3789	PF12664.7	gi|345004084|ref|YP_004806937.1|	-	0.24	11.2	3.9	1.2	8.9	3.9	2.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3789)
BPD_transp_1	PF00528.22	gi|345004085|ref|YP_004806938.1|	-	3.2e-19	69.4	10.8	3.2e-19	69.4	10.8	2.1	1	1	1	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
Glutaredoxin	PF00462.24	gi|345004087|ref|YP_004806940.1|	-	8.2e-17	61.2	0.0	1.5e-16	60.3	0.0	1.5	1	0	0	1	1	1	1	Glutaredoxin
MarR	PF01047.22	gi|345004088|ref|YP_004806941.1|	-	0.0002	21.2	0.0	0.0003	20.7	0.0	1.3	1	0	0	1	1	1	1	MarR	family
B-block_TFIIIC	PF04182.12	gi|345004088|ref|YP_004806941.1|	-	0.00031	20.9	0.0	0.00042	20.4	0.0	1.2	1	0	0	1	1	1	1	B-block	binding	subunit	of	TFIIIC
MarR_2	PF12802.7	gi|345004088|ref|YP_004806941.1|	-	0.059	13.3	0.0	0.085	12.8	0.0	1.2	1	0	0	1	1	1	0	MarR	family
TrmB	PF01978.19	gi|345004088|ref|YP_004806941.1|	-	0.12	12.3	0.1	0.16	11.8	0.1	1.2	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
AI-2E_transport	PF01594.16	gi|345004089|ref|YP_004806942.1|	-	1.2e-11	44.3	41.6	4.5e-11	42.5	41.6	1.8	1	1	0	1	1	1	1	AI-2E	family	transporter
YdjM	PF04307.14	gi|345004090|ref|YP_004806943.1|	-	2.9e-15	56.0	15.8	3.8e-15	55.6	15.8	1.2	1	0	0	1	1	1	1	LexA-binding,	inner	membrane-associated	putative	hydrolase
Acetyltransf_1	PF00583.25	gi|345004090|ref|YP_004806943.1|	-	1.9e-10	41.0	0.1	4.7e-10	39.7	0.1	1.6	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_7	PF13508.7	gi|345004090|ref|YP_004806943.1|	-	1e-08	35.5	0.2	6.1e-08	33.0	0.1	2.2	2	0	0	2	2	2	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_10	PF13673.7	gi|345004090|ref|YP_004806943.1|	-	1e-07	31.9	0.0	1.9e-07	31.1	0.0	1.4	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
FR47	PF08445.10	gi|345004090|ref|YP_004806943.1|	-	0.001	19.0	0.0	0.0027	17.6	0.0	1.7	1	0	0	1	1	1	1	FR47-like	protein
Acetyltransf_9	PF13527.7	gi|345004090|ref|YP_004806943.1|	-	0.0041	17.2	0.3	0.012	15.6	0.0	1.9	2	0	0	2	2	2	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_CG	PF14542.6	gi|345004090|ref|YP_004806943.1|	-	0.0058	16.7	0.0	0.027	14.6	0.0	2.0	1	1	1	2	2	2	1	GCN5-related	N-acetyl-transferase
Acetyltransf_16	PF05301.11	gi|345004090|ref|YP_004806943.1|	-	0.13	12.1	0.0	0.22	11.3	0.0	1.3	1	0	0	1	1	1	0	GNAT	acetyltransferase,	Mec-17
Proteasome	PF00227.26	gi|345004091|ref|YP_004806944.1|	-	2.2e-57	193.7	0.0	2.8e-57	193.3	0.0	1.1	1	0	0	1	1	1	1	Proteasome	subunit
Proteasome_A_N	PF10584.9	gi|345004091|ref|YP_004806944.1|	-	9.4e-14	50.8	0.1	1.7e-13	50.0	0.1	1.4	1	0	0	1	1	1	1	Proteasome	subunit	A	N-terminal	signature
RNase_P_Rpp14	PF01900.19	gi|345004092|ref|YP_004806945.1|	-	1.3e-17	63.9	0.0	1.6e-17	63.6	0.0	1.1	1	0	0	1	1	1	1	Rpp14/Pop5	family
Methyltransf_25	PF13649.6	gi|345004093|ref|YP_004806946.1|	-	1e-18	67.8	0.1	1.8e-18	67.0	0.1	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.6	gi|345004093|ref|YP_004806946.1|	-	1.9e-16	60.2	0.0	2.7e-16	59.7	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_11	PF08241.12	gi|345004093|ref|YP_004806946.1|	-	3.7e-14	53.2	0.0	6.1e-14	52.4	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.12	gi|345004093|ref|YP_004806946.1|	-	6.7e-12	46.0	0.0	1.2e-11	45.2	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Ubie_methyltran	PF01209.18	gi|345004093|ref|YP_004806946.1|	-	1.5e-09	37.6	0.0	2.2e-09	37.0	0.0	1.2	1	0	0	1	1	1	1	ubiE/COQ5	methyltransferase	family
Methyltransf_23	PF13489.6	gi|345004093|ref|YP_004806946.1|	-	1.2e-07	31.8	0.0	1.6e-07	31.3	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
MTS	PF05175.14	gi|345004093|ref|YP_004806946.1|	-	9.4e-07	28.5	0.0	1.4e-06	28.0	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	small	domain
PrmA	PF06325.13	gi|345004093|ref|YP_004806946.1|	-	1.2e-05	24.9	0.1	1.6e-05	24.4	0.1	1.2	1	0	0	1	1	1	1	Ribosomal	protein	L11	methyltransferase	(PrmA)
Methyltransf_32	PF13679.6	gi|345004093|ref|YP_004806946.1|	-	0.00063	19.8	0.0	0.00083	19.4	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
CMAS	PF02353.20	gi|345004093|ref|YP_004806946.1|	-	0.00093	18.6	0.0	0.0013	18.1	0.0	1.2	1	0	0	1	1	1	1	Mycolic	acid	cyclopropane	synthetase
Methyltransf_2	PF00891.18	gi|345004093|ref|YP_004806946.1|	-	0.003	16.9	0.0	0.0036	16.6	0.0	1.2	1	0	0	1	1	1	1	O-methyltransferase	domain
Methyltransf_18	PF12847.7	gi|345004093|ref|YP_004806946.1|	-	0.0046	16.9	0.0	0.008	16.1	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
PCMT	PF01135.19	gi|345004093|ref|YP_004806946.1|	-	0.012	15.4	0.0	0.017	14.9	0.0	1.3	1	0	0	1	1	1	0	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
DREV	PF05219.12	gi|345004093|ref|YP_004806946.1|	-	0.037	13.1	0.0	0.046	12.8	0.0	1.3	1	0	0	1	1	1	0	DREV	methyltransferase
UPF0020	PF01170.18	gi|345004093|ref|YP_004806946.1|	-	0.049	13.3	0.0	0.075	12.7	0.0	1.3	1	0	0	1	1	1	0	Putative	RNA	methylase	family	UPF0020
Methyltransf_4	PF02390.17	gi|345004093|ref|YP_004806946.1|	-	0.051	13.0	0.0	0.089	12.3	0.0	1.4	1	0	0	1	1	1	0	Putative	methyltransferase
Methyltransf_16	PF10294.9	gi|345004093|ref|YP_004806946.1|	-	0.066	12.9	0.0	0.1	12.3	0.0	1.3	1	0	0	1	1	1	0	Lysine	methyltransferase
TehB	PF03848.14	gi|345004093|ref|YP_004806946.1|	-	0.21	11.0	0.0	0.26	10.7	0.0	1.1	1	0	0	1	1	1	0	Tellurite	resistance	protein	TehB
RNase_P_p30	PF01876.16	gi|345004094|ref|YP_004806947.1|	-	3.9e-34	118.0	0.0	5.6e-34	117.5	0.0	1.2	1	0	0	1	1	1	1	RNase	P	subunit	p30
Pterin_bind	PF00809.22	gi|345004095|ref|YP_004806948.1|	-	2.3e-76	256.7	0.3	3.5e-76	256.1	0.3	1.3	1	0	0	1	1	1	1	Pterin	binding	enzyme
Mur_ligase_M	PF08245.12	gi|345004095|ref|YP_004806948.1|	-	6.3e-11	42.6	0.0	6.4e-10	39.3	0.0	2.2	1	1	0	1	1	1	1	Mur	ligase	middle	domain
Mur_ligase_C	PF02875.21	gi|345004095|ref|YP_004806948.1|	-	1.6e-07	31.4	0.0	6e-07	29.6	0.0	2.0	1	0	0	1	1	1	1	Mur	ligase	family,	glutamate	ligase	domain
CAT_RBD	PF03123.15	gi|345004095|ref|YP_004806948.1|	-	0.14	12.1	0.0	0.26	11.3	0.0	1.4	1	0	0	1	1	1	0	CAT	RNA	binding	domain
PEP_mutase	PF13714.6	gi|345004095|ref|YP_004806948.1|	-	0.26	10.7	9.5	1.8	7.9	0.0	3.8	3	1	0	5	5	5	0	Phosphoenolpyruvate	phosphomutase
AICARFT_IMPCHas	PF01808.18	gi|345004096|ref|YP_004806949.1|	-	1.6e-84	283.9	0.0	2.1e-84	283.5	0.0	1.1	1	0	0	1	1	1	1	AICARFT/IMPCHase	bienzyme
Formyl_trans_N	PF00551.19	gi|345004096|ref|YP_004806949.1|	-	3.7e-40	137.6	0.1	8.7e-40	136.4	0.0	1.7	2	0	0	2	2	2	1	Formyl	transferase
CoA_binding_2	PF13380.6	gi|345004096|ref|YP_004806949.1|	-	0.0053	17.3	0.8	2.4	8.7	0.0	3.4	3	0	0	3	3	3	1	CoA	binding	domain
PucR	PF07905.11	gi|345004096|ref|YP_004806949.1|	-	0.0065	16.7	0.3	4.7	7.5	0.0	2.7	2	0	0	2	2	2	2	Purine	catabolism	regulatory	protein-like	family
Lyase_1	PF00206.20	gi|345004097|ref|YP_004806950.1|	-	3e-50	171.4	0.0	3.8e-50	171.1	0.0	1.1	1	0	0	1	1	1	1	Lyase
ASL_C	PF08328.11	gi|345004097|ref|YP_004806950.1|	-	1.2e-40	138.2	0.0	2e-40	137.4	0.0	1.4	1	0	0	1	1	1	1	Adenylosuccinate	lyase	C-terminal
Usp	PF00582.26	gi|345004098|ref|YP_004806951.1|	-	2e-14	54.3	3.8	7.3e-12	46.0	0.1	3.7	2	2	0	3	3	3	2	Universal	stress	protein	family
Peptidase_M20	PF01546.28	gi|345004099|ref|YP_004806952.1|	-	7.6e-27	94.4	0.7	6.6e-26	91.3	0.7	1.9	1	1	0	1	1	1	1	Peptidase	family	M20/M25/M40
M20_dimer	PF07687.14	gi|345004099|ref|YP_004806952.1|	-	1.4e-20	73.2	0.0	2.6e-20	72.4	0.0	1.5	1	0	0	1	1	1	1	Peptidase	dimerisation	domain
Peptidase_M28	PF04389.17	gi|345004099|ref|YP_004806952.1|	-	0.14	11.8	0.0	0.21	11.2	0.0	1.2	1	0	0	1	1	1	0	Peptidase	family	M28
DAP_epimerase	PF01678.19	gi|345004100|ref|YP_004806953.1|	-	7e-39	132.8	5.1	3.2e-20	72.5	0.3	3.2	2	2	0	2	2	2	2	Diaminopimelate	epimerase
Orn_Arg_deC_N	PF02784.16	gi|345004101|ref|YP_004806954.1|	-	2.8e-39	135.0	0.0	3.6e-39	134.6	0.0	1.1	1	0	0	1	1	1	1	Pyridoxal-dependent	decarboxylase,	pyridoxal	binding	domain
Orn_DAP_Arg_deC	PF00278.22	gi|345004101|ref|YP_004806954.1|	-	2.3e-23	82.3	0.0	2.3e-23	82.2	0.0	1.3	1	0	0	1	1	1	1	Pyridoxal-dependent	decarboxylase,	C-terminal	sheet	domain
THDPS_N_2	PF14805.6	gi|345004102|ref|YP_004806955.1|	-	9.3e-19	67.4	1.1	1.4e-18	66.8	1.1	1.3	1	0	0	1	1	1	1	Tetrahydrodipicolinate	N-succinyltransferase	N-terminal
Hexapep	PF00132.24	gi|345004102|ref|YP_004806955.1|	-	5.7e-11	41.7	3.2	0.00071	19.2	0.9	3.4	3	0	0	3	3	3	3	Bacterial	transferase	hexapeptide	(six	repeats)
Hexapep_2	PF14602.6	gi|345004102|ref|YP_004806955.1|	-	0.00033	20.3	9.2	0.03	14.1	0.9	3.7	4	0	0	4	4	4	2	Hexapeptide	repeat	of	succinyl-transferase
Transpeptidase	PF00905.22	gi|345004102|ref|YP_004806955.1|	-	0.16	11.2	0.0	0.23	10.6	0.0	1.2	1	0	0	1	1	1	0	Penicillin	binding	protein	transpeptidase	domain
HD_3	PF13023.6	gi|345004102|ref|YP_004806955.1|	-	0.23	11.3	0.0	0.32	10.9	0.0	1.2	1	0	0	1	1	1	0	HD	domain
DapB_C	PF05173.14	gi|345004103|ref|YP_004806956.1|	-	1.9e-37	127.9	0.0	2.7e-37	127.5	0.0	1.2	1	0	0	1	1	1	1	Dihydrodipicolinate	reductase,	C-terminus
DapB_N	PF01113.20	gi|345004103|ref|YP_004806956.1|	-	8.6e-23	80.8	0.1	1.7e-22	79.8	0.1	1.5	1	0	0	1	1	1	1	Dihydrodipicolinate	reductase,	N-terminus
NAD_binding_3	PF03447.16	gi|345004103|ref|YP_004806956.1|	-	0.00015	22.4	0.2	0.00027	21.6	0.2	1.4	1	0	0	1	1	1	1	Homoserine	dehydrogenase,	NAD	binding	domain
Semialdhyde_dh	PF01118.24	gi|345004103|ref|YP_004806956.1|	-	0.016	15.7	0.1	0.03	14.8	0.1	1.5	1	0	0	1	1	1	0	Semialdehyde	dehydrogenase,	NAD	binding	domain
Sacchrp_dh_NADP	PF03435.18	gi|345004103|ref|YP_004806956.1|	-	0.035	14.3	0.2	0.21	11.8	0.2	2.1	1	1	0	1	1	1	0	Saccharopine	dehydrogenase	NADP	binding	domain
CoA_binding_2	PF13380.6	gi|345004103|ref|YP_004806956.1|	-	0.12	12.8	0.1	0.26	11.8	0.1	1.6	1	1	0	1	1	1	0	CoA	binding	domain
DHDPS	PF00701.22	gi|345004104|ref|YP_004806957.1|	-	4e-84	281.8	0.0	4.5e-84	281.6	0.0	1.0	1	0	0	1	1	1	1	Dihydrodipicolinate	synthetase	family
ThiG	PF05690.14	gi|345004104|ref|YP_004806957.1|	-	5.1e-05	22.7	0.3	8.9e-05	21.9	0.3	1.3	1	0	0	1	1	1	1	Thiazole	biosynthesis	protein	ThiG
NMO	PF03060.15	gi|345004104|ref|YP_004806957.1|	-	0.01	15.2	3.3	0.015	14.7	0.8	2.0	2	0	0	2	2	2	0	Nitronate	monooxygenase
NYN	PF01936.18	gi|345004105|ref|YP_004806958.1|	-	1.9e-40	138.7	0.1	2.3e-40	138.5	0.1	1.0	1	0	0	1	1	1	1	NYN	domain
PIN7	PF18475.1	gi|345004105|ref|YP_004806958.1|	-	0.0054	17.3	0.0	0.0091	16.6	0.0	1.5	1	1	0	1	1	1	1	PIN	domain
LpxI_N	PF17930.1	gi|345004105|ref|YP_004806958.1|	-	0.0076	16.1	0.0	0.017	15.0	0.0	1.5	2	0	0	2	2	2	1	LpxI	N-terminal	domain
NAD_binding_7	PF13241.6	gi|345004105|ref|YP_004806958.1|	-	0.04	14.4	0.1	4.4	7.8	0.0	2.2	2	0	0	2	2	2	0	Putative	NAD(P)-binding
TGT_C2	PF14810.6	gi|345004106|ref|YP_004806959.1|	-	6e-24	84.0	0.0	1.2e-23	83.0	0.0	1.5	2	0	0	2	2	2	1	Patch-forming	domain	C2	of	tRNA-guanine	transglycosylase
PUA	PF01472.20	gi|345004106|ref|YP_004806959.1|	-	1.8e-14	53.5	0.2	2.5e-14	53.0	0.2	1.2	1	0	0	1	1	1	1	PUA	domain
SPP	PF06550.11	gi|345004107|ref|YP_004806960.1|	-	1.3e-85	287.3	12.9	1.7e-85	286.9	12.9	1.1	1	0	0	1	1	1	1	Signal-peptide	peptidase,	presenilin	aspartyl	protease
Peptidase_A22B	PF04258.13	gi|345004107|ref|YP_004806960.1|	-	4.4e-06	26.4	8.5	0.0031	17.1	4.4	2.6	2	1	0	2	2	2	2	Signal	peptide	peptidase
Presenilin	PF01080.17	gi|345004107|ref|YP_004806960.1|	-	8.3e-05	21.5	13.1	0.74	8.5	0.0	3.1	2	1	0	2	2	2	2	Presenilin
Arteri_Gl	PF00951.18	gi|345004107|ref|YP_004806960.1|	-	5.7	6.7	7.8	12	5.7	0.2	2.5	2	0	0	2	2	2	0	Arterivirus	GL	envelope	glycoprotein
Gar1	PF04410.14	gi|345004108|ref|YP_004806961.1|	-	1.5e-12	47.5	0.0	1.6e-12	47.5	0.0	1.0	1	0	0	1	1	1	1	Gar1/Naf1	RNA	binding	region
SRP19	PF01922.17	gi|345004109|ref|YP_004806962.1|	-	2.2e-24	86.2	0.0	2.6e-24	86.0	0.0	1.1	1	0	0	1	1	1	1	SRP19	protein
Peripla_BP_2	PF01497.18	gi|345004110|ref|YP_004806963.1|	-	5.5e-17	62.1	1.0	5.5e-17	62.1	1.0	1.5	2	0	0	2	2	2	1	Periplasmic	binding	protein
FecCD	PF01032.18	gi|345004111|ref|YP_004806964.1|	-	1.3e-88	297.0	28.1	1.7e-88	296.7	28.1	1.1	1	0	0	1	1	1	1	FecCD	transport	family
ABC-3	PF00950.17	gi|345004111|ref|YP_004806964.1|	-	4.8e-05	23.0	14.8	8.5e-05	22.2	14.8	1.5	1	0	0	1	1	1	1	ABC	3	transport	family
DUF3188	PF11384.8	gi|345004111|ref|YP_004806964.1|	-	0.1	12.4	5.7	1.6	8.5	0.6	3.3	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3188)
Hint_2	PF13403.6	gi|345004111|ref|YP_004806964.1|	-	0.12	12.7	0.1	0.84	9.9	0.0	2.1	2	0	0	2	2	2	0	Hint	domain
ABC_tran	PF00005.27	gi|345004112|ref|YP_004806965.1|	-	5.8e-33	114.3	0.0	8.5e-33	113.8	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|345004112|ref|YP_004806965.1|	-	3.3e-08	33.7	0.0	2.9e-05	24.1	0.0	2.2	2	0	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_23	PF13476.6	gi|345004112|ref|YP_004806965.1|	-	1.6e-06	28.7	0.0	2.3e-06	28.2	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
SMC_N	PF02463.19	gi|345004112|ref|YP_004806965.1|	-	2.3e-06	27.2	0.0	7.8e-06	25.5	0.0	1.7	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_16	PF13191.6	gi|345004112|ref|YP_004806965.1|	-	0.00033	21.1	0.1	0.00068	20.1	0.1	1.6	1	0	0	1	1	1	1	AAA	ATPase	domain
AAA_29	PF13555.6	gi|345004112|ref|YP_004806965.1|	-	0.0011	18.6	0.1	0.0022	17.7	0.1	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_30	PF13604.6	gi|345004112|ref|YP_004806965.1|	-	0.0013	18.5	0.3	0.0032	17.2	0.3	1.6	1	0	0	1	1	1	1	AAA	domain
Zeta_toxin	PF06414.12	gi|345004112|ref|YP_004806965.1|	-	0.0054	16.0	0.0	0.01	15.1	0.0	1.4	1	0	0	1	1	1	1	Zeta	toxin
AAA_28	PF13521.6	gi|345004112|ref|YP_004806965.1|	-	0.0068	16.7	2.0	0.0096	16.2	0.1	2.2	2	1	0	2	2	2	1	AAA	domain
RsgA_GTPase	PF03193.16	gi|345004112|ref|YP_004806965.1|	-	0.023	14.6	0.4	0.053	13.4	0.2	1.7	2	0	0	2	2	1	0	RsgA	GTPase
NACHT	PF05729.12	gi|345004112|ref|YP_004806965.1|	-	0.024	14.5	0.2	0.44	10.4	0.0	2.5	3	0	0	3	3	3	0	NACHT	domain
cobW	PF02492.19	gi|345004112|ref|YP_004806965.1|	-	0.028	14.0	0.2	0.15	11.6	0.1	2.3	3	0	0	3	3	3	0	CobW/HypB/UreG,	nucleotide-binding	domain
AAA	PF00004.29	gi|345004112|ref|YP_004806965.1|	-	0.043	14.2	0.0	0.092	13.2	0.0	1.5	1	0	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_27	PF13514.6	gi|345004112|ref|YP_004806965.1|	-	0.049	13.2	0.1	0.11	12.1	0.1	1.5	1	0	0	1	1	1	0	AAA	domain
AAA_15	PF13175.6	gi|345004112|ref|YP_004806965.1|	-	0.05	13.3	0.0	0.12	12.1	0.0	1.5	2	0	0	2	2	2	0	AAA	ATPase	domain
MukB	PF04310.12	gi|345004112|ref|YP_004806965.1|	-	0.054	13.3	0.1	0.11	12.3	0.1	1.4	1	0	0	1	1	1	0	MukB	N-terminal
AAA_33	PF13671.6	gi|345004112|ref|YP_004806965.1|	-	0.071	13.3	3.7	0.091	12.9	0.3	2.6	2	1	0	2	2	2	0	AAA	domain
MMR_HSR1	PF01926.23	gi|345004112|ref|YP_004806965.1|	-	0.08	13.0	0.0	0.21	11.7	0.0	1.8	1	0	0	1	1	1	0	50S	ribosome-binding	GTPase
TsaE	PF02367.17	gi|345004112|ref|YP_004806965.1|	-	0.081	12.9	0.2	0.16	12.0	0.2	1.4	1	0	0	1	1	1	0	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
AAA_22	PF13401.6	gi|345004112|ref|YP_004806965.1|	-	0.12	12.7	0.2	0.29	11.4	0.1	1.7	2	0	0	2	2	2	0	AAA	domain
Met_10	PF02475.16	gi|345004113|ref|YP_004806966.1|	-	2.3e-52	177.7	0.0	3e-52	177.3	0.0	1.2	1	0	0	1	1	1	1	Met-10+	like-protein
Trm5_N	PF18093.1	gi|345004113|ref|YP_004806966.1|	-	4.9e-09	35.9	0.0	1.1e-08	34.9	0.0	1.5	1	0	0	1	1	1	1	tRNA	methyltransferase	5	N-terminal	domain
Methyltransf_15	PF09445.10	gi|345004113|ref|YP_004806966.1|	-	1.4e-08	34.5	0.0	2e-08	34.0	0.0	1.2	1	0	0	1	1	1	1	RNA	cap	guanine-N2	methyltransferase
Methyltransf_25	PF13649.6	gi|345004113|ref|YP_004806966.1|	-	2.9e-08	34.3	0.1	1.1e-07	32.4	0.1	2.0	1	1	0	1	1	1	1	Methyltransferase	domain
MTS	PF05175.14	gi|345004113|ref|YP_004806966.1|	-	7.2e-07	28.9	0.1	1.3e-06	28.1	0.1	1.4	1	1	0	1	1	1	1	Methyltransferase	small	domain
PrmA	PF06325.13	gi|345004113|ref|YP_004806966.1|	-	5.1e-06	26.1	0.2	8.2e-06	25.4	0.2	1.3	1	0	0	1	1	1	1	Ribosomal	protein	L11	methyltransferase	(PrmA)
Methyltransf_31	PF13847.6	gi|345004113|ref|YP_004806966.1|	-	5.5e-06	26.2	0.0	8.9e-06	25.6	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_11	PF08241.12	gi|345004113|ref|YP_004806966.1|	-	0.0001	22.9	0.0	0.00037	21.1	0.0	2.0	1	1	0	1	1	1	1	Methyltransferase	domain
TRM	PF02005.16	gi|345004113|ref|YP_004806966.1|	-	0.00013	21.3	0.2	0.00018	20.8	0.2	1.1	1	0	0	1	1	1	1	N2,N2-dimethylguanosine	tRNA	methyltransferase
UPF0020	PF01170.18	gi|345004113|ref|YP_004806966.1|	-	0.0015	18.2	0.0	0.0024	17.6	0.0	1.3	1	0	0	1	1	1	1	Putative	RNA	methylase	family	UPF0020
TehB	PF03848.14	gi|345004113|ref|YP_004806966.1|	-	0.0022	17.4	0.0	0.0038	16.7	0.0	1.3	1	0	0	1	1	1	1	Tellurite	resistance	protein	TehB
Cons_hypoth95	PF03602.15	gi|345004113|ref|YP_004806966.1|	-	0.0035	17.0	0.0	0.0072	16.0	0.0	1.5	1	0	0	1	1	1	1	Conserved	hypothetical	protein	95
Methyltransf_18	PF12847.7	gi|345004113|ref|YP_004806966.1|	-	0.018	15.0	0.0	0.04	13.9	0.0	1.6	1	0	0	1	1	1	0	Methyltransferase	domain
Methyltr_RsmB-F	PF01189.17	gi|345004113|ref|YP_004806966.1|	-	0.052	13.2	0.1	0.1	12.2	0.1	1.4	1	0	0	1	1	1	0	16S	rRNA	methyltransferase	RsmB/F
Methyltransf_12	PF08242.12	gi|345004113|ref|YP_004806966.1|	-	0.071	13.9	0.0	0.17	12.6	0.0	1.8	2	0	0	2	2	1	0	Methyltransferase	domain
DNA_methylase	PF00145.17	gi|345004113|ref|YP_004806966.1|	-	0.13	11.6	0.0	0.19	11.0	0.0	1.2	1	0	0	1	1	1	0	C-5	cytosine-specific	DNA	methylase
Methyltransf_23	PF13489.6	gi|345004113|ref|YP_004806966.1|	-	0.14	11.9	0.0	0.22	11.3	0.0	1.4	1	0	0	1	1	1	0	Methyltransferase	domain
PrsW-protease	PF13367.6	gi|345004116|ref|YP_004806969.1|	-	1.6e-45	155.0	15.1	3.3e-45	154.0	15.1	1.5	1	0	0	1	1	1	1	PrsW	family	intramembrane	metalloprotease
TP_methylase	PF00590.20	gi|345004117|ref|YP_004806970.1|	-	8.7e-21	74.8	3.7	1.2e-20	74.4	3.7	1.2	1	0	0	1	1	1	1	Tetrapyrrole	(Corrin/Porphyrin)	Methylases
Exosortase_EpsH	PF09721.10	gi|345004118|ref|YP_004806971.1|	-	3.1e-36	125.2	13.2	9e-36	123.7	13.1	1.7	1	1	0	1	1	1	1	Transmembrane	exosortase	(Exosortase_EpsH)
PGF-CTERM	PF18204.1	gi|345004119|ref|YP_004806972.1|	-	1.7e-06	27.8	9.0	1.7e-06	27.8	9.0	2.2	2	0	0	2	2	2	1	PGF-CTERM	motif
Malectin	PF11721.8	gi|345004119|ref|YP_004806972.1|	-	0.051	13.7	0.0	0.55	10.3	0.0	2.7	3	0	0	3	3	3	0	Malectin	domain
DUF748	PF05359.11	gi|345004119|ref|YP_004806972.1|	-	3.2	7.9	9.5	0.13	12.4	0.5	3.4	4	1	1	5	5	5	0	Domain	of	Unknown	Function	(DUF748)
ParE_toxin	PF05016.15	gi|345004121|ref|YP_004806974.1|	-	0.0068	17.0	0.2	0.012	16.2	0.1	1.5	1	1	1	2	2	2	1	ParE	toxin	of	type	II	toxin-antitoxin	system,	parDE
RHH_1	PF01402.21	gi|345004122|ref|YP_004806975.1|	-	9.3e-09	34.9	0.2	1.9e-08	34.0	0.2	1.5	1	0	0	1	1	1	1	Ribbon-helix-helix	protein,	copG	family
HicB_lk_antitox	PF15919.5	gi|345004122|ref|YP_004806975.1|	-	0.00021	21.4	0.0	0.0003	20.9	0.0	1.2	1	0	0	1	1	1	1	HicB_like	antitoxin	of	bacterial	toxin-antitoxin	system
DUF2274	PF10038.9	gi|345004122|ref|YP_004806975.1|	-	0.028	14.9	0.5	0.052	14.0	0.1	1.6	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2274)
HTH_20	PF12840.7	gi|345004124|ref|YP_004806977.1|	-	0.00014	21.8	0.2	0.00034	20.6	0.2	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain
TrmB	PF01978.19	gi|345004124|ref|YP_004806977.1|	-	0.00099	19.0	0.0	0.0031	17.4	0.0	1.8	2	0	0	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_5	PF01022.20	gi|345004124|ref|YP_004806977.1|	-	0.0096	15.8	0.0	0.018	14.9	0.0	1.3	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_40	PF14493.6	gi|345004124|ref|YP_004806977.1|	-	0.057	13.9	0.1	0.42	11.1	0.1	2.1	2	1	0	2	2	2	0	Helix-turn-helix	domain
Glyoxalase	PF00903.25	gi|345004125|ref|YP_004806978.1|	-	1e-17	64.5	2.4	7.9e-14	52.0	0.4	2.7	2	1	0	2	2	2	2	Glyoxalase/Bleomycin	resistance	protein/Dioxygenase	superfamily
Glyoxalase_4	PF13669.6	gi|345004125|ref|YP_004806978.1|	-	5e-12	46.1	3.8	1.8e-05	25.0	0.3	3.9	1	1	3	4	4	4	3	Glyoxalase/Bleomycin	resistance	protein/Dioxygenase	superfamily
Glyoxalase_6	PF18029.1	gi|345004125|ref|YP_004806978.1|	-	3.6e-06	27.7	6.5	1.2e-05	26.1	0.4	2.4	2	1	0	2	2	2	1	Glyoxalase-like	domain
Glyoxalase_3	PF13468.6	gi|345004125|ref|YP_004806978.1|	-	6.3e-05	23.2	3.6	0.05	13.7	0.4	3.9	1	1	1	2	2	2	1	Glyoxalase-like	domain
PRiA4_ORF3	PF07929.11	gi|345004125|ref|YP_004806978.1|	-	1.9	8.2	11.6	0.21	11.2	3.6	2.9	1	1	1	2	2	2	0	Plasmid	pRiA4b	ORF-3-like	protein
MMR_HSR1_Xtn	PF16897.5	gi|345004126|ref|YP_004806979.1|	-	1.9e-31	108.2	0.8	3.9e-31	107.2	0.2	1.9	2	0	0	2	2	2	1	C-terminal	region	of	MMR_HSR1	domain
MMR_HSR1	PF01926.23	gi|345004126|ref|YP_004806979.1|	-	1.5e-23	83.1	0.0	2.9e-23	82.1	0.0	1.5	1	0	0	1	1	1	1	50S	ribosome-binding	GTPase
FeoB_N	PF02421.18	gi|345004126|ref|YP_004806979.1|	-	2.2e-13	50.0	0.1	6.1e-13	48.6	0.0	1.7	2	0	0	2	2	2	1	Ferrous	iron	transport	protein	B
TGS	PF02824.21	gi|345004126|ref|YP_004806979.1|	-	1.3e-12	47.6	0.0	2.4e-12	46.7	0.0	1.5	1	0	0	1	1	1	1	TGS	domain
RsgA_GTPase	PF03193.16	gi|345004126|ref|YP_004806979.1|	-	6.3e-06	26.2	1.5	0.015	15.2	0.2	3.2	3	2	1	4	4	4	2	RsgA	GTPase
Dynamin_N	PF00350.23	gi|345004126|ref|YP_004806979.1|	-	0.00013	22.1	0.0	0.13	12.3	0.1	2.6	1	1	1	2	2	2	2	Dynamin	family
AIG1	PF04548.16	gi|345004126|ref|YP_004806979.1|	-	0.00031	20.1	0.0	0.00054	19.4	0.0	1.4	1	0	0	1	1	1	1	AIG1	family
AAA_28	PF13521.6	gi|345004126|ref|YP_004806979.1|	-	0.00051	20.3	0.1	0.092	13.0	0.0	2.5	2	0	0	2	2	2	1	AAA	domain
MeaB	PF03308.16	gi|345004126|ref|YP_004806979.1|	-	0.0017	17.4	0.1	0.0082	15.2	0.0	2.1	2	0	0	2	2	2	1	Methylmalonyl	Co-A	mutase-associated	GTPase	MeaB
ABC_tran	PF00005.27	gi|345004126|ref|YP_004806979.1|	-	0.0095	16.5	0.1	0.074	13.6	0.0	2.1	2	0	0	2	2	2	1	ABC	transporter
ATP_bind_1	PF03029.17	gi|345004126|ref|YP_004806979.1|	-	0.011	15.6	0.3	2.1	8.0	0.0	2.6	2	1	0	2	2	2	0	Conserved	hypothetical	ATP	binding	protein
cobW	PF02492.19	gi|345004126|ref|YP_004806979.1|	-	0.023	14.3	1.4	2.2	7.8	0.0	2.8	1	1	1	2	2	2	0	CobW/HypB/UreG,	nucleotide-binding	domain
Arf	PF00025.21	gi|345004126|ref|YP_004806979.1|	-	0.037	13.5	0.0	1.5	8.3	0.0	2.3	2	0	0	2	2	2	0	ADP-ribosylation	factor	family
AAA_29	PF13555.6	gi|345004126|ref|YP_004806979.1|	-	0.1	12.4	0.2	0.25	11.1	0.2	1.6	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
AAA_16	PF13191.6	gi|345004126|ref|YP_004806979.1|	-	0.14	12.5	0.0	0.31	11.4	0.0	1.5	1	0	0	1	1	1	0	AAA	ATPase	domain
Acetyltransf_1	PF00583.25	gi|345004127|ref|YP_004806980.1|	-	4.6e-16	59.1	0.1	7.4e-16	58.4	0.1	1.4	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_7	PF13508.7	gi|345004127|ref|YP_004806980.1|	-	1.4e-12	47.9	0.1	3.6e-12	46.6	0.0	1.6	2	0	0	2	2	2	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_10	PF13673.7	gi|345004127|ref|YP_004806980.1|	-	3.8e-12	46.2	0.0	6.3e-12	45.5	0.0	1.4	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
FR47	PF08445.10	gi|345004127|ref|YP_004806980.1|	-	0.00011	22.1	0.0	0.00025	21.0	0.0	1.5	1	0	0	1	1	1	1	FR47-like	protein
Acetyltransf_3	PF13302.7	gi|345004127|ref|YP_004806980.1|	-	0.001	19.7	0.1	0.0017	19.0	0.1	1.4	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_9	PF13527.7	gi|345004127|ref|YP_004806980.1|	-	0.0013	18.9	0.2	0.0071	16.4	0.2	2.4	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_4	PF13420.7	gi|345004127|ref|YP_004806980.1|	-	0.0018	18.4	0.0	0.0029	17.7	0.0	1.5	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_13	PF13880.6	gi|345004127|ref|YP_004806980.1|	-	0.014	15.3	0.0	0.035	14.1	0.0	1.6	1	0	0	1	1	1	0	ESCO1/2	acetyl-transferase
PanZ	PF12568.8	gi|345004127|ref|YP_004806980.1|	-	0.079	12.7	0.0	0.14	11.9	0.0	1.3	1	0	0	1	1	1	0	Acetyltransferase	(GNAT)	domain,	PanZ
zf-RRN7	PF11781.8	gi|345004127|ref|YP_004806980.1|	-	0.2	11.4	2.0	2.5	7.9	0.1	2.4	2	0	0	2	2	2	0	Zinc-finger	of	RNA-polymerase	I-specific	TFIIB,	Rrn7
AMP-binding	PF00501.28	gi|345004128|ref|YP_004806981.1|	-	9.2e-85	284.8	0.0	1.1e-84	284.5	0.0	1.1	1	0	0	1	1	1	1	AMP-binding	enzyme
AMP-binding_C	PF13193.6	gi|345004128|ref|YP_004806981.1|	-	1.4e-23	83.7	0.4	2.9e-23	82.6	0.4	1.6	1	0	0	1	1	1	1	AMP-binding	enzyme	C-terminal	domain
ACAS_N	PF16177.5	gi|345004128|ref|YP_004806981.1|	-	3.6e-13	49.2	1.8	1.5e-12	47.2	1.8	2.2	1	0	0	1	1	1	1	Acetyl-coenzyme	A	synthetase	N-terminus
MM_CoA_mutase	PF01642.22	gi|345004130|ref|YP_004806983.1|	-	3.6e-212	705.5	0.5	4.1e-212	705.3	0.5	1.0	1	0	0	1	1	1	1	Methylmalonyl-CoA	mutase
Paramyxo_P	PF01806.17	gi|345004130|ref|YP_004806983.1|	-	0.0098	15.4	0.0	0.015	14.7	0.0	1.3	1	0	0	1	1	1	1	Paramyxovirinae	P	phosphoprotein	C-terminal	region
Met_asp_mut_E	PF06368.11	gi|345004130|ref|YP_004806983.1|	-	0.0099	14.4	0.2	0.014	13.9	0.2	1.3	1	0	0	1	1	1	1	Methylaspartate	mutase	E	chain	(MutE)
Ferritin	PF00210.24	gi|345004131|ref|YP_004806984.1|	-	1.7e-29	102.6	1.3	2e-29	102.3	1.3	1.1	1	0	0	1	1	1	1	Ferritin-like	domain
DUF1451	PF07295.11	gi|345004131|ref|YP_004806984.1|	-	0.031	14.3	5.2	0.21	11.6	0.4	2.6	2	1	1	3	3	3	0	Zinc-ribbon	containing	domain
Fe_dep_repr_C	PF02742.15	gi|345004131|ref|YP_004806984.1|	-	0.6	10.2	2.8	2.1	8.5	0.5	2.7	3	0	0	3	3	3	0	Iron	dependent	repressor,	metal	binding	and	dimerisation	domain
HisKA	PF00512.25	gi|345004131|ref|YP_004806984.1|	-	1.8	8.7	5.2	4.6	7.3	0.5	3.1	2	2	1	3	3	3	0	His	Kinase	A	(phospho-acceptor)	domain
Ferritin	PF00210.24	gi|345004132|ref|YP_004806985.1|	-	1.4e-21	76.9	0.1	1.8e-21	76.6	0.1	1.1	1	0	0	1	1	1	1	Ferritin-like	domain
GDH_N	PF12466.8	gi|345004132|ref|YP_004806985.1|	-	0.1	12.8	0.1	0.99	9.7	0.1	2.1	2	0	0	2	2	2	0	Glutamate	dehydrogenase	N	terminal
Ferritin	PF00210.24	gi|345004133|ref|YP_004806986.1|	-	7e-16	58.4	0.2	8.3e-16	58.2	0.2	1.1	1	0	0	1	1	1	1	Ferritin-like	domain
Peptidase_M42	PF05343.14	gi|345004135|ref|YP_004806988.1|	-	1.1e-89	300.3	7.0	1.3e-89	300.1	7.0	1.0	1	0	0	1	1	1	1	M42	glutamyl	aminopeptidase
Peptidase_M28	PF04389.17	gi|345004135|ref|YP_004806988.1|	-	3.3e-09	36.7	1.2	4.1e-06	26.6	0.2	2.3	2	0	0	2	2	2	2	Peptidase	family	M28
Peptidase_M20	PF01546.28	gi|345004135|ref|YP_004806988.1|	-	6.7e-08	32.5	0.2	1.2e-07	31.6	0.2	1.4	1	0	0	1	1	1	1	Peptidase	family	M20/M25/M40
Peptidase_M18	PF02127.15	gi|345004135|ref|YP_004806988.1|	-	7e-06	25.1	0.5	0.033	13.0	0.0	2.2	2	0	0	2	2	2	2	Aminopeptidase	I	zinc	metalloprotease	(M18)
MTH865	PF07747.11	gi|345004136|ref|YP_004806989.1|	-	9e-30	102.3	0.2	1e-29	102.1	0.2	1.0	1	0	0	1	1	1	1	MTH865-like	family
Glycos_transf_1	PF00534.20	gi|345004137|ref|YP_004806990.1|	-	3.4e-17	62.5	0.0	7.9e-17	61.3	0.0	1.5	2	0	0	2	2	2	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.6	gi|345004137|ref|YP_004806990.1|	-	8.4e-14	52.2	0.0	2.4e-13	50.7	0.0	1.7	2	0	0	2	2	2	1	Glycosyl	transferases	group	1
Glyco_trans_4_4	PF13579.6	gi|345004137|ref|YP_004806990.1|	-	1.4e-11	45.1	6.6	1.4e-11	45.1	6.6	2.4	2	1	0	2	2	2	1	Glycosyl	transferase	4-like	domain
Glyco_transf_4	PF13439.6	gi|345004137|ref|YP_004806990.1|	-	1.7e-10	41.2	1.1	6.8e-10	39.2	1.1	2.0	1	1	0	1	1	1	1	Glycosyltransferase	Family	4
Copper-bind	PF00127.20	gi|345004138|ref|YP_004806991.1|	-	2.7e-16	59.8	0.0	4.5e-16	59.1	0.0	1.3	1	0	0	1	1	1	1	Copper	binding	proteins,	plastocyanin/azurin	family
PKD	PF00801.20	gi|345004138|ref|YP_004806991.1|	-	0.73	9.7	7.1	2.2	8.2	7.1	1.8	1	1	0	1	1	1	0	PKD	domain
UCR_Fe-S_N	PF10399.9	gi|345004138|ref|YP_004806991.1|	-	5.3	6.5	13.4	0.17	11.3	7.0	1.9	2	0	0	2	2	2	0	Ubiquitinol-cytochrome	C	reductase	Fe-S	subunit	TAT	signal
FAD_binding_6	PF00970.24	gi|345004139|ref|YP_004806992.1|	-	6.4e-13	48.9	0.0	8.8e-13	48.5	0.0	1.2	1	0	0	1	1	1	1	Oxidoreductase	FAD-binding	domain
GreA_GreB	PF01272.19	gi|345004139|ref|YP_004806992.1|	-	0.14	12.0	0.1	1.3	8.9	0.0	2.5	2	1	0	2	2	2	0	Transcription	elongation	factor,	GreA/GreB,	C-term
POR_N	PF01855.19	gi|345004140|ref|YP_004806993.1|	-	1.8e-57	194.7	0.2	2.8e-57	194.1	0.2	1.3	1	0	0	1	1	1	1	Pyruvate	flavodoxin/ferredoxin	oxidoreductase,	thiamine	diP-bdg
POR	PF01558.18	gi|345004140|ref|YP_004806993.1|	-	1.3e-38	132.8	0.1	3e-38	131.7	0.1	1.6	1	0	0	1	1	1	1	Pyruvate	ferredoxin/flavodoxin	oxidoreductase
TPP_enzyme_N	PF02776.18	gi|345004140|ref|YP_004806993.1|	-	5.4e-05	22.9	0.1	0.00011	21.9	0.1	1.4	1	0	0	1	1	1	1	Thiamine	pyrophosphate	enzyme,	N-terminal	TPP	binding	domain
PFOR_II	PF17147.4	gi|345004140|ref|YP_004806993.1|	-	0.0019	18.5	0.0	0.004	17.4	0.0	1.6	1	0	0	1	1	1	1	Pyruvate:ferredoxin	oxidoreductase	core	domain	II
TPP_enzyme_C	PF02775.21	gi|345004141|ref|YP_004806994.1|	-	3.7e-31	108.0	0.4	5.7e-31	107.4	0.4	1.3	1	0	0	1	1	1	1	Thiamine	pyrophosphate	enzyme,	C-terminal	TPP	binding	domain
PFO_beta_C	PF12367.8	gi|345004141|ref|YP_004806994.1|	-	5.6e-17	61.6	0.5	1.1e-16	60.8	0.5	1.5	1	0	0	1	1	1	1	Pyruvate	ferredoxin	oxidoreductase	beta	subunit	C	terminal
MatE	PF01554.18	gi|345004142|ref|YP_004806995.1|	-	4.3e-43	146.8	24.1	4.3e-24	85.0	3.4	2.8	3	1	0	3	3	3	2	MatE
Polysacc_synt_C	PF14667.6	gi|345004142|ref|YP_004806995.1|	-	0.00011	22.3	17.7	0.00034	20.7	4.1	3.4	5	1	0	5	5	5	2	Polysaccharide	biosynthesis	C-terminal	domain
DAO	PF01266.24	gi|345004143|ref|YP_004806996.1|	-	2.6e-09	37.1	0.1	5.2e-05	23.0	0.0	2.2	1	1	0	2	2	2	2	FAD	dependent	oxidoreductase
Trp_halogenase	PF04820.14	gi|345004143|ref|YP_004806996.1|	-	2.4e-07	30.0	0.0	0.006	15.5	0.0	2.9	2	1	1	3	3	3	2	Tryptophan	halogenase
Pyr_redox_2	PF07992.14	gi|345004143|ref|YP_004806996.1|	-	3.1e-07	29.9	0.1	2.6e-06	26.9	0.1	2.2	2	1	0	3	3	3	1	Pyridine	nucleotide-disulphide	oxidoreductase
Lycopene_cycl	PF05834.12	gi|345004143|ref|YP_004806996.1|	-	1.1e-06	28.0	0.0	1.5e-06	27.5	0.0	1.2	1	0	0	1	1	1	1	Lycopene	cyclase	protein
FAD_binding_3	PF01494.19	gi|345004143|ref|YP_004806996.1|	-	1.2e-06	28.0	0.0	5.2e-06	25.9	0.0	2.1	1	1	0	1	1	1	1	FAD	binding	domain
FAD_oxidored	PF12831.7	gi|345004143|ref|YP_004806996.1|	-	3.6e-06	26.6	0.5	4.4e-05	23.0	0.5	2.2	1	1	0	1	1	1	1	FAD	dependent	oxidoreductase
FAD_binding_2	PF00890.24	gi|345004143|ref|YP_004806996.1|	-	9.9e-06	24.9	0.1	1.7e-05	24.1	0.1	1.4	1	1	0	1	1	1	1	FAD	binding	domain
GIDA	PF01134.22	gi|345004143|ref|YP_004806996.1|	-	8.4e-05	21.8	0.0	0.0082	15.3	0.0	2.1	2	0	0	2	2	2	1	Glucose	inhibited	division	protein	A
HI0933_like	PF03486.14	gi|345004143|ref|YP_004806996.1|	-	9.5e-05	21.3	0.0	0.00036	19.4	0.1	1.8	2	0	0	2	2	2	1	HI0933-like	protein
Thi4	PF01946.17	gi|345004143|ref|YP_004806996.1|	-	0.00011	21.5	0.0	0.00044	19.6	0.0	1.9	2	0	0	2	2	2	1	Thi4	family
NAD_binding_8	PF13450.6	gi|345004143|ref|YP_004806996.1|	-	0.00023	21.3	0.1	0.00059	20.0	0.1	1.7	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
Pyr_redox_3	PF13738.6	gi|345004143|ref|YP_004806996.1|	-	0.0018	17.6	0.0	0.0026	17.1	0.0	1.2	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
XdhC_C	PF13478.6	gi|345004143|ref|YP_004806996.1|	-	0.019	15.4	0.0	0.047	14.2	0.0	1.6	1	0	0	1	1	1	0	XdhC	Rossmann	domain
TrkA_N	PF02254.18	gi|345004143|ref|YP_004806996.1|	-	0.021	15.1	0.1	0.14	12.5	0.0	2.1	2	0	0	2	2	2	0	TrkA-N	domain
3HCDH_N	PF02737.18	gi|345004143|ref|YP_004806996.1|	-	0.068	13.1	0.0	0.11	12.4	0.0	1.3	1	0	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
Pyr_redox	PF00070.27	gi|345004143|ref|YP_004806996.1|	-	0.1	13.2	0.0	0.21	12.2	0.0	1.5	1	0	0	1	1	1	0	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_binding_7	PF13241.6	gi|345004143|ref|YP_004806996.1|	-	0.13	12.7	0.0	0.27	11.7	0.0	1.5	1	0	0	1	1	1	0	Putative	NAD(P)-binding
Aldo_ket_red	PF00248.21	gi|345004144|ref|YP_004806997.1|	-	5.4e-52	176.8	0.0	1.1e-38	133.1	0.0	2.0	1	1	1	2	2	2	2	Aldo/keto	reductase	family
DUF373	PF04123.13	gi|345004146|ref|YP_004806999.1|	-	1.7e-109	366.3	8.0	2e-109	366.1	8.0	1.0	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF373)
GRDA	PF04723.14	gi|345004146|ref|YP_004806999.1|	-	0.048	13.4	0.1	0.16	11.7	0.1	1.9	2	0	0	2	2	2	0	Glycine	reductase	complex	selenoprotein	A
Se-cys_synth_N	PF12390.8	gi|345004146|ref|YP_004806999.1|	-	1.3	9.3	4.2	3.5	7.9	0.1	3.5	3	1	0	3	3	3	0	Selenocysteine	synthase	N	terminal
Peptidase_S49	PF01343.18	gi|345004147|ref|YP_004807000.1|	-	4.9e-41	140.2	0.0	7.6e-41	139.6	0.0	1.2	1	0	0	1	1	1	1	Peptidase	family	S49
SDH_sah	PF01972.16	gi|345004147|ref|YP_004807000.1|	-	0.0017	17.4	0.0	0.0027	16.8	0.0	1.2	1	0	0	1	1	1	1	Serine	dehydrogenase	proteinase
CLP_protease	PF00574.23	gi|345004147|ref|YP_004807000.1|	-	0.0062	16.4	0.0	0.044	13.7	0.0	1.9	2	0	0	2	2	2	1	Clp	protease
T3SSipB	PF16535.5	gi|345004148|ref|YP_004807001.1|	-	6.4	7.2	32.5	0.16	12.4	8.1	2.9	1	1	2	3	3	3	0	Type	III	cell	invasion	protein	SipB
LPP	PF04728.13	gi|345004148|ref|YP_004807001.1|	-	7	7.1	19.4	0.15	12.4	1.5	4.6	3	1	1	4	4	4	0	Lipoprotein	leucine-zipper
DUF371	PF04027.13	gi|345004149|ref|YP_004807002.1|	-	3.2e-51	172.8	0.1	3.8e-51	172.5	0.1	1.0	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF371)
CSS-motif	PF12792.7	gi|345004149|ref|YP_004807002.1|	-	0.1	12.1	0.1	0.23	10.9	0.0	1.6	2	0	0	2	2	2	0	CSS	motif	domain	associated	with	EAL
Copper-bind	PF00127.20	gi|345004150|ref|YP_004807003.1|	-	6.5e-19	68.2	0.0	8.6e-19	67.8	0.0	1.1	1	0	0	1	1	1	1	Copper	binding	proteins,	plastocyanin/azurin	family
Cupredoxin_1	PF13473.6	gi|345004150|ref|YP_004807003.1|	-	0.00016	21.7	0.0	0.00021	21.4	0.0	1.1	1	0	0	1	1	1	1	Cupredoxin-like	domain
TAT_signal	PF10518.9	gi|345004150|ref|YP_004807003.1|	-	2	8.4	10.8	0.14	12.0	5.7	1.8	2	0	0	2	2	2	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
PKD	PF00801.20	gi|345004150|ref|YP_004807003.1|	-	2.1	8.2	9.0	12	5.8	8.7	2.3	1	1	0	1	1	1	0	PKD	domain
MarR	PF01047.22	gi|345004151|ref|YP_004807004.1|	-	0.032	14.2	0.1	0.045	13.7	0.1	1.4	1	1	0	1	1	1	0	MarR	family
GntR	PF00392.21	gi|345004151|ref|YP_004807004.1|	-	0.078	12.6	0.2	0.26	11.0	0.1	1.8	2	0	0	2	2	2	0	Bacterial	regulatory	proteins,	gntR	family
Phage_XkdX	PF09693.10	gi|345004151|ref|YP_004807004.1|	-	0.11	12.6	0.1	0.18	11.9	0.1	1.4	1	0	0	1	1	1	0	Phage	uncharacterised	protein	(Phage_XkdX)
N6_N4_Mtase	PF01555.18	gi|345004153|ref|YP_004807006.1|	-	1.5e-25	90.3	0.0	1.9e-25	89.9	0.0	1.1	1	0	0	1	1	1	1	DNA	methylase
UPF0020	PF01170.18	gi|345004153|ref|YP_004807006.1|	-	1.5e-05	24.7	0.0	1.6	8.4	0.0	3.2	3	0	0	3	3	3	3	Putative	RNA	methylase	family	UPF0020
N6_Mtase	PF02384.16	gi|345004153|ref|YP_004807006.1|	-	0.0022	17.4	0.0	0.56	9.4	0.0	2.3	2	0	0	2	2	2	2	N-6	DNA	Methylase
Cons_hypoth95	PF03602.15	gi|345004153|ref|YP_004807006.1|	-	0.021	14.5	0.0	1.2	8.8	0.0	2.3	2	0	0	2	2	2	0	Conserved	hypothetical	protein	95
Methyltransf_11	PF08241.12	gi|345004153|ref|YP_004807006.1|	-	0.024	15.3	0.0	11	6.8	0.0	2.6	2	0	0	2	2	2	0	Methyltransferase	domain
MethyltransfD12	PF02086.15	gi|345004153|ref|YP_004807006.1|	-	0.056	13.1	0.0	0.15	11.7	0.0	1.7	2	0	0	2	2	2	0	D12	class	N6	adenine-specific	DNA	methyltransferase
N6-adenineMlase	PF10237.9	gi|345004153|ref|YP_004807006.1|	-	0.071	12.9	0.0	0.15	11.9	0.0	1.5	1	1	0	1	1	1	0	Probable	N6-adenine	methyltransferase
HTH_45	PF14947.6	gi|345004154|ref|YP_004807007.1|	-	2.8e-05	24.0	0.0	3.8e-05	23.6	0.0	1.2	1	0	0	1	1	1	1	Winged	helix-turn-helix
HTH_27	PF13463.6	gi|345004154|ref|YP_004807007.1|	-	0.0009	19.7	0.3	0.0013	19.1	0.3	1.3	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
HTH_34	PF13601.6	gi|345004154|ref|YP_004807007.1|	-	0.0036	17.4	0.0	0.005	17.0	0.0	1.3	1	1	0	1	1	1	1	Winged	helix	DNA-binding	domain
DUF4364	PF14277.6	gi|345004154|ref|YP_004807007.1|	-	0.0053	16.5	0.0	0.0068	16.2	0.0	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4364)
MarR_2	PF12802.7	gi|345004154|ref|YP_004807007.1|	-	0.033	14.1	0.4	0.051	13.5	0.4	1.4	1	0	0	1	1	1	0	MarR	family
PadR	PF03551.14	gi|345004154|ref|YP_004807007.1|	-	0.044	13.7	0.1	0.073	13.0	0.1	1.5	1	1	0	1	1	1	0	Transcriptional	regulator	PadR-like	family
DUF1918	PF08940.11	gi|345004155|ref|YP_004807008.1|	-	0.1	12.2	1.9	1.2	8.9	1.7	2.5	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF1918)
NHase_beta	PF02211.15	gi|345004155|ref|YP_004807008.1|	-	0.11	12.5	0.1	0.15	12.1	0.1	1.2	1	0	0	1	1	1	0	Nitrile	hydratase	beta	subunit
KH_7	PF17214.3	gi|345004156|ref|YP_004807009.1|	-	1e-30	105.4	0.5	8e-29	99.4	0.1	2.7	2	0	0	2	2	2	1	KH	domain
Beta-Casp	PF10996.8	gi|345004156|ref|YP_004807009.1|	-	5e-20	71.8	0.0	1.1e-19	70.8	0.0	1.6	1	0	0	1	1	1	1	Beta-Casp	domain
RMMBL	PF07521.12	gi|345004156|ref|YP_004807009.1|	-	6.9e-15	54.7	0.0	1.7e-14	53.4	0.0	1.7	1	0	0	1	1	1	1	Zn-dependent	metallo-hydrolase	RNA	specificity	domain
Lactamase_B	PF00753.27	gi|345004156|ref|YP_004807009.1|	-	1.2e-14	54.8	0.7	3.9e-14	53.1	0.7	1.9	1	1	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Lactamase_B_6	PF16661.5	gi|345004156|ref|YP_004807009.1|	-	3e-12	46.4	0.0	5.1e-12	45.6	0.0	1.4	1	0	0	1	1	1	1	Metallo-beta-lactamase	superfamily	domain
Lactamase_B_2	PF12706.7	gi|345004156|ref|YP_004807009.1|	-	2.4e-09	37.0	0.0	4.8e-09	36.0	0.0	1.5	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
KH_2	PF07650.17	gi|345004156|ref|YP_004807009.1|	-	1.5e-07	31.1	0.1	1.1e-06	28.3	0.0	2.3	2	0	0	2	2	2	1	KH	domain
Lactamase_B_3	PF13483.6	gi|345004156|ref|YP_004807009.1|	-	0.00036	20.5	0.1	0.0012	18.7	0.0	1.8	2	0	0	2	2	2	1	Beta-lactamase	superfamily	domain
KH_4	PF13083.6	gi|345004156|ref|YP_004807009.1|	-	0.0042	16.9	0.1	0.01	15.7	0.1	1.6	1	0	0	1	1	1	1	KH	domain
KH_1	PF00013.29	gi|345004156|ref|YP_004807009.1|	-	0.019	14.8	0.1	0.057	13.3	0.0	1.8	2	0	0	2	2	2	0	KH	domain
HGTP_anticodon	PF03129.20	gi|345004158|ref|YP_004807011.1|	-	1.2e-21	76.6	0.1	2.8e-21	75.5	0.1	1.6	1	0	0	1	1	1	1	Anticodon	binding	domain
tRNA-synt_2b	PF00587.25	gi|345004158|ref|YP_004807011.1|	-	3.1e-19	69.6	0.0	5.6e-19	68.8	0.0	1.4	1	0	0	1	1	1	1	tRNA	synthetase	class	II	core	domain	(G,	H,	P,	S	and	T)
ProRS-C_1	PF09180.11	gi|345004158|ref|YP_004807011.1|	-	4.1e-18	65.3	0.0	1e-17	64.1	0.0	1.7	1	0	0	1	1	1	1	Prolyl-tRNA	synthetase,	C-terminal
Amidohydro_2	PF04909.14	gi|345004159|ref|YP_004807012.1|	-	3.3e-12	46.8	0.7	4e-12	46.5	0.7	1.1	1	0	0	1	1	1	1	Amidohydrolase
OrfB_Zn_ribbon	PF07282.11	gi|345004160|ref|YP_004807013.1|	-	5.1e-19	68.0	1.2	9.2e-19	67.1	1.2	1.5	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
DUF4510	PF14971.6	gi|345004160|ref|YP_004807013.1|	-	0.035	14.4	0.2	0.11	12.8	0.0	1.9	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4510)
DUF72	PF01904.18	gi|345004160|ref|YP_004807013.1|	-	0.066	13.3	0.3	0.1	12.7	0.3	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	DUF72
Zn_Tnp_IS1595	PF12760.7	gi|345004160|ref|YP_004807013.1|	-	1.4	9.0	5.4	2.7	8.0	5.4	1.5	1	0	0	1	1	1	0	Transposase	zinc-ribbon	domain
HSP20	PF00011.21	gi|345004161|ref|YP_004807014.1|	-	2e-08	34.3	0.0	2.4e-08	34.0	0.0	1.1	1	0	0	1	1	1	1	Hsp20/alpha	crystallin	family
ArsA_HSP20	PF17886.1	gi|345004161|ref|YP_004807014.1|	-	2.7e-06	26.8	0.0	5.9e-06	25.8	0.0	1.6	1	1	0	1	1	1	1	HSP20-like	domain	found	in	ArsA
ABC1	PF03109.16	gi|345004162|ref|YP_004807015.1|	-	1.2e-26	93.2	0.0	3.3e-26	91.8	0.0	1.7	1	0	0	1	1	1	1	ABC1	family
Pkinase	PF00069.25	gi|345004162|ref|YP_004807015.1|	-	0.0014	18.0	0.0	0.003	17.0	0.0	1.6	2	0	0	2	2	2	1	Protein	kinase	domain
APH	PF01636.23	gi|345004162|ref|YP_004807015.1|	-	0.015	15.2	0.5	0.74	9.7	0.1	2.8	1	1	1	2	2	2	0	Phosphotransferase	enzyme	family
Aminotran_1_2	PF00155.21	gi|345004163|ref|YP_004807016.1|	-	8.2e-42	143.7	0.0	9.8e-42	143.4	0.0	1.0	1	0	0	1	1	1	1	Aminotransferase	class	I	and	II
Aminotran_5	PF00266.19	gi|345004163|ref|YP_004807016.1|	-	1.6e-09	37.2	0.0	2.2e-09	36.8	0.0	1.1	1	0	0	1	1	1	1	Aminotransferase	class-V
Beta_elim_lyase	PF01212.21	gi|345004163|ref|YP_004807016.1|	-	0.0015	17.8	0.0	0.0021	17.4	0.0	1.3	1	0	0	1	1	1	1	Beta-eliminating	lyase
Alliinase_C	PF04864.13	gi|345004163|ref|YP_004807016.1|	-	0.0064	15.4	0.0	0.0081	15.1	0.0	1.1	1	0	0	1	1	1	1	Allinase
Cys_Met_Meta_PP	PF01053.20	gi|345004163|ref|YP_004807016.1|	-	0.013	14.0	0.0	0.018	13.6	0.0	1.1	1	0	0	1	1	1	0	Cys/Met	metabolism	PLP-dependent	enzyme
DegT_DnrJ_EryC1	PF01041.17	gi|345004163|ref|YP_004807016.1|	-	0.014	14.8	0.0	0.018	14.4	0.0	1.2	1	0	0	1	1	1	0	DegT/DnrJ/EryC1/StrS	aminotransferase	family
DUF5132	PF17195.4	gi|345004163|ref|YP_004807016.1|	-	0.35	11.0	0.1	0.35	11.0	0.1	1.9	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF5132)
Pyrophosphatase	PF00719.19	gi|345004165|ref|YP_004807018.1|	-	1.3e-50	171.3	0.6	1.5e-50	171.1	0.6	1.0	1	0	0	1	1	1	1	Inorganic	pyrophosphatase
PadR	PF03551.14	gi|345004166|ref|YP_004807019.1|	-	3.3e-17	62.2	0.7	4.4e-17	61.8	0.7	1.2	1	0	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
HTH_27	PF13463.6	gi|345004166|ref|YP_004807019.1|	-	0.00016	22.1	0.0	0.00027	21.3	0.0	1.5	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
HTH_45	PF14947.6	gi|345004166|ref|YP_004807019.1|	-	0.018	15.0	0.0	0.027	14.4	0.0	1.4	1	1	0	1	1	1	0	Winged	helix-turn-helix
DUF1495	PF07381.11	gi|345004166|ref|YP_004807019.1|	-	0.048	13.5	0.0	0.068	13.0	0.0	1.4	1	1	0	1	1	1	0	Winged	helix	DNA-binding	domain	(DUF1495)
RTP	PF02334.16	gi|345004166|ref|YP_004807019.1|	-	0.07	13.8	0.1	0.097	13.3	0.1	1.3	1	0	0	1	1	1	0	Replication	terminator	protein
RVT_3	PF13456.6	gi|345004168|ref|YP_004807021.1|	-	4.3e-24	84.7	0.0	5.6e-24	84.3	0.0	1.2	1	0	0	1	1	1	1	Reverse	transcriptase-like
RNase_H	PF00075.24	gi|345004168|ref|YP_004807021.1|	-	3.9e-11	43.3	0.0	1.1e-10	41.9	0.0	1.7	1	1	0	1	1	1	1	RNase	H
DUF4687	PF15747.5	gi|345004168|ref|YP_004807021.1|	-	0.044	14.3	0.1	0.096	13.2	0.0	1.6	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4687)
TauE	PF01925.19	gi|345004169|ref|YP_004807022.1|	-	1.2e-14	54.5	44.2	1.5e-14	54.2	44.2	1.1	1	0	0	1	1	1	1	Sulfite	exporter	TauE/SafE
Nre_N	PF04894.12	gi|345004170|ref|YP_004807023.1|	-	5.7e-99	331.3	0.0	6.8e-99	331.1	0.0	1.1	1	0	0	1	1	1	1	Archaeal	Nre,	N-terminal
Nre_C	PF04895.12	gi|345004170|ref|YP_004807023.1|	-	3.7e-36	123.4	0.0	6.3e-36	122.6	0.0	1.4	1	0	0	1	1	1	1	Archaeal	Nre,	C-terminal
Virul_fac_BrkB	PF03631.15	gi|345004172|ref|YP_004807025.1|	-	0.069	12.7	10.2	0.088	12.4	10.2	1.2	1	0	0	1	1	1	0	Virulence	factor	BrkB
HIG_1_N	PF04588.13	gi|345004172|ref|YP_004807025.1|	-	0.3	11.3	0.1	0.3	11.3	0.1	2.7	2	1	0	2	2	2	0	Hypoxia	induced	protein	conserved	region
Phage_holin_3_6	PF07332.11	gi|345004172|ref|YP_004807025.1|	-	1.1	9.3	18.6	1.1e+03	-0.4	18.6	2.3	1	1	0	1	1	1	0	Putative	Actinobacterial	Holin-X,	holin	superfamily	III
DUF2157	PF09925.9	gi|345004172|ref|YP_004807025.1|	-	5.3	6.8	11.4	2.6	7.8	8.8	1.7	1	1	0	1	1	1	0	Predicted	membrane	protein	(DUF2157)
DNA_pol_B_thumb	PF14791.6	gi|345004173|ref|YP_004807026.1|	-	2.7e-19	69.1	0.0	7.2e-19	67.7	0.0	1.8	1	0	0	1	1	1	1	DNA	polymerase	beta	thumb
HHH_8	PF14716.6	gi|345004173|ref|YP_004807026.1|	-	3.3e-17	62.6	2.4	1.4e-14	54.2	0.3	3.6	2	1	1	3	3	3	1	Helix-hairpin-helix	domain
HHH_5	PF14520.6	gi|345004173|ref|YP_004807026.1|	-	2.2e-14	53.8	0.6	8.7e-13	48.7	0.2	2.9	2	0	0	2	2	2	1	Helix-hairpin-helix	domain
PHP	PF02811.19	gi|345004173|ref|YP_004807026.1|	-	7.4e-08	32.9	0.0	1.7e-07	31.7	0.0	1.6	1	0	0	1	1	1	1	PHP	domain
HHH	PF00633.23	gi|345004173|ref|YP_004807026.1|	-	0.00024	20.8	0.1	0.004	16.9	0.1	2.9	2	0	0	2	2	2	1	Helix-hairpin-helix	motif
DNA_pol_lambd_f	PF10391.9	gi|345004173|ref|YP_004807026.1|	-	0.00074	19.3	0.0	0.0076	16.1	0.0	2.6	2	1	0	2	2	2	1	Fingers	domain	of	DNA	polymerase	lambda
HHH_2	PF12826.7	gi|345004173|ref|YP_004807026.1|	-	0.0011	19.0	0.8	1.6	8.9	0.1	3.2	1	1	2	3	3	3	3	Helix-hairpin-helix	motif
DNA_pol_B_palm	PF14792.6	gi|345004173|ref|YP_004807026.1|	-	0.0092	16.2	0.2	0.044	14.0	0.0	2.2	3	0	0	3	3	3	1	DNA	polymerase	beta	palm
HHH_3	PF12836.7	gi|345004173|ref|YP_004807026.1|	-	0.013	15.7	0.1	26	5.2	0.0	3.4	3	0	0	3	3	3	0	Helix-hairpin-helix	motif
Ferritin-like	PF12902.7	gi|345004174|ref|YP_004807027.1|	-	0.18	11.7	0.2	0.19	11.6	0.2	1.2	1	0	0	1	1	1	0	Ferritin-like
Peptidase_M32	PF02074.15	gi|345004175|ref|YP_004807028.1|	-	1.2e-165	552.0	0.0	1.4e-165	551.8	0.0	1.0	1	0	0	1	1	1	1	Carboxypeptidase	Taq	(M32)	metallopeptidase
EspB	PF05802.11	gi|345004175|ref|YP_004807028.1|	-	0.023	14.7	1.5	0.043	13.8	1.5	1.3	1	0	0	1	1	1	0	Enterobacterial	EspB	protein
7TMR-HDED	PF07697.11	gi|345004175|ref|YP_004807028.1|	-	0.033	14.3	0.9	0.061	13.4	0.9	1.5	1	0	0	1	1	1	0	7TM-HD	extracellular
DUF1028	PF06267.12	gi|345004176|ref|YP_004807029.1|	-	4.6e-67	225.6	0.0	5.5e-67	225.3	0.0	1.1	1	0	0	1	1	1	1	Family	of	unknown	function	(DUF1028)
SepF	PF04472.12	gi|345004177|ref|YP_004807030.1|	-	5.5e-15	55.4	1.1	7.4e-15	55.0	1.1	1.2	1	0	0	1	1	1	1	Cell	division	protein	SepF
TFIIIC_sub6	PF10419.9	gi|345004177|ref|YP_004807030.1|	-	0.1	12.4	0.0	0.15	12.0	0.0	1.4	1	1	0	1	1	1	0	TFIIIC	subunit	triple	barrel	domain
PrsW-protease	PF13367.6	gi|345004178|ref|YP_004807031.1|	-	3.5e-47	160.4	15.0	3.5e-47	160.4	15.0	1.6	2	0	0	2	2	2	1	PrsW	family	intramembrane	metalloprotease
DUF402	PF04167.13	gi|345004179|ref|YP_004807032.1|	-	8.7e-18	64.3	1.7	1.7e-17	63.3	1.7	1.5	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF402)
S1	PF00575.23	gi|345004179|ref|YP_004807032.1|	-	0.0015	18.8	1.8	0.006	16.9	1.8	2.0	1	1	0	1	1	1	1	S1	RNA	binding	domain
NifU	PF01106.17	gi|345004180|ref|YP_004807033.1|	-	4.5e-10	39.5	0.5	1.6e-09	37.7	0.3	1.9	1	1	1	2	2	2	1	NifU-like	domain
LVIVD	PF08309.11	gi|345004181|ref|YP_004807034.1|	-	4.9e-16	57.7	0.6	0.00017	20.9	0.0	5.6	5	0	0	5	5	5	4	LVIVD	repeat
Beta_propel	PF09826.9	gi|345004181|ref|YP_004807034.1|	-	0.0047	15.8	0.0	1.5	7.6	0.0	3.2	4	0	0	4	4	4	2	Beta	propeller	domain
SBP56	PF05694.11	gi|345004181|ref|YP_004807034.1|	-	0.012	14.4	0.2	0.37	9.5	0.0	2.7	2	1	1	3	3	3	0	56kDa	selenium	binding	protein	(SBP56)
PGF-CTERM	PF18204.1	gi|345004181|ref|YP_004807034.1|	-	0.023	14.7	1.6	0.023	14.7	1.6	2.0	2	0	0	2	2	2	0	PGF-CTERM	motif
GCV_T	PF01571.21	gi|345004182|ref|YP_004807035.1|	-	1.9e-40	138.9	0.0	2.5e-40	138.5	0.0	1.1	1	0	0	1	1	1	1	Aminomethyltransferase	folate-binding	domain
GCV_T_C	PF08669.11	gi|345004182|ref|YP_004807035.1|	-	4.7e-15	55.3	0.0	1.1e-14	54.1	0.0	1.7	1	0	0	1	1	1	1	Glycine	cleavage	T-protein	C-terminal	barrel	domain
HTH_20	PF12840.7	gi|345004183|ref|YP_004807036.1|	-	0.0011	18.9	0.5	0.0021	18.1	0.5	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
MarR_2	PF12802.7	gi|345004183|ref|YP_004807036.1|	-	0.014	15.2	1.4	0.014	15.2	1.4	1.5	2	0	0	2	2	2	0	MarR	family
Rrf2	PF02082.20	gi|345004183|ref|YP_004807036.1|	-	0.037	14.4	0.0	0.063	13.6	0.0	1.3	1	0	0	1	1	1	0	Transcriptional	regulator
HTH_34	PF13601.6	gi|345004183|ref|YP_004807036.1|	-	0.041	14.1	0.0	0.05	13.8	0.0	1.1	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
DUF3225	PF11533.8	gi|345004183|ref|YP_004807036.1|	-	0.11	12.2	0.0	0.15	11.7	0.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3225)
Zn-ribbon_8	PF09723.10	gi|345004184|ref|YP_004807037.1|	-	0.014	15.5	3.6	0.19	11.9	0.9	2.7	2	0	0	2	2	2	0	Zinc	ribbon	domain
Anti-TRAP	PF15777.5	gi|345004184|ref|YP_004807037.1|	-	0.097	12.6	0.6	0.5	10.4	0.6	2.3	1	0	0	1	1	1	0	Tryptophan	RNA-binding	attenuator	protein	inhibitory	protein
DZR	PF12773.7	gi|345004184|ref|YP_004807037.1|	-	0.13	12.4	1.7	2.1	8.4	0.5	2.4	2	0	0	2	2	2	0	Double	zinc	ribbon
Zn_Tnp_IS91	PF14319.6	gi|345004184|ref|YP_004807037.1|	-	0.49	10.5	2.5	0.75	9.9	0.4	2.0	2	0	0	2	2	2	0	Transposase	zinc-binding	domain
zinc_ribbon_9	PF14369.6	gi|345004184|ref|YP_004807037.1|	-	0.62	10.4	4.7	2.8	8.3	2.4	3.0	2	1	1	3	3	3	0	zinc-ribbon
zf-C2H2_jaz	PF12171.8	gi|345004184|ref|YP_004807037.1|	-	0.85	10.0	2.5	4.6	7.6	0.1	2.3	2	0	0	2	2	2	0	Zinc-finger	double-stranded	RNA-binding
TF_Zn_Ribbon	PF08271.12	gi|345004184|ref|YP_004807037.1|	-	1.1	8.8	10.3	0.21	11.1	1.4	3.4	3	0	0	3	3	3	0	TFIIB	zinc-binding
zf-ISL3	PF14690.6	gi|345004184|ref|YP_004807037.1|	-	8.5	7.1	6.4	26	5.6	0.1	2.9	2	1	0	2	2	2	0	zinc-finger	of	transposase	IS204/IS1001/IS1096/IS1165
DUF5611	PF18446.1	gi|345004185|ref|YP_004807038.1|	-	1.6e-31	109.2	0.7	1.9e-31	109.0	0.7	1.0	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF5611)
FAD_binding_3	PF01494.19	gi|345004186|ref|YP_004807039.1|	-	1.6e-17	63.8	2.4	3.4e-15	56.2	0.2	2.9	2	1	0	2	2	2	1	FAD	binding	domain
Lycopene_cycl	PF05834.12	gi|345004186|ref|YP_004807039.1|	-	1.2e-09	37.8	0.0	0.001	18.2	0.0	2.1	2	0	0	2	2	2	2	Lycopene	cyclase	protein
Pyr_redox_2	PF07992.14	gi|345004186|ref|YP_004807039.1|	-	1.2e-07	31.3	1.8	0.001	18.4	0.1	3.0	3	0	0	3	3	3	2	Pyridine	nucleotide-disulphide	oxidoreductase
DAO	PF01266.24	gi|345004186|ref|YP_004807039.1|	-	0.00017	21.3	5.4	0.018	14.6	0.1	2.4	1	1	0	2	2	2	2	FAD	dependent	oxidoreductase
FAD_oxidored	PF12831.7	gi|345004186|ref|YP_004807039.1|	-	0.00058	19.3	0.1	0.00081	18.8	0.1	1.1	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
HI0933_like	PF03486.14	gi|345004186|ref|YP_004807039.1|	-	0.00072	18.4	0.0	0.023	13.4	0.0	2.1	2	0	0	2	2	2	1	HI0933-like	protein
FAD_binding_2	PF00890.24	gi|345004186|ref|YP_004807039.1|	-	0.0084	15.2	3.1	0.012	14.8	1.6	1.8	1	1	1	2	2	2	1	FAD	binding	domain
Trp_halogenase	PF04820.14	gi|345004186|ref|YP_004807039.1|	-	0.049	12.5	2.2	0.2	10.5	0.1	2.3	2	1	0	2	2	2	0	Tryptophan	halogenase
NAD_binding_8	PF13450.6	gi|345004186|ref|YP_004807039.1|	-	0.06	13.6	0.2	0.19	12.0	0.2	1.9	1	0	0	1	1	1	0	NAD(P)-binding	Rossmann-like	domain
SE	PF08491.10	gi|345004186|ref|YP_004807039.1|	-	0.062	12.3	0.0	0.52	9.3	0.0	2.0	2	0	0	2	2	2	0	Squalene	epoxidase
Pyr_redox_3	PF13738.6	gi|345004186|ref|YP_004807039.1|	-	0.17	11.1	0.3	1.3	8.3	0.3	1.9	2	0	0	2	2	2	0	Pyridine	nucleotide-disulphide	oxidoreductase
2-Hacid_dh_C	PF02826.19	gi|345004186|ref|YP_004807039.1|	-	0.17	11.2	0.1	0.35	10.2	0.1	1.4	1	0	0	1	1	1	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
Pyr_redox	PF00070.27	gi|345004186|ref|YP_004807039.1|	-	0.27	11.8	1.6	2.1	8.9	0.0	2.5	3	0	0	3	3	3	0	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_binding_9	PF13454.6	gi|345004186|ref|YP_004807039.1|	-	0.36	10.8	1.3	26	4.8	0.0	2.6	2	0	0	2	2	2	0	FAD-NAD(P)-binding
Sortilin-Vps10	PF15902.5	gi|345004187|ref|YP_004807040.1|	-	3.3e-11	42.6	0.0	3.8e-06	26.0	0.0	2.9	2	1	1	3	3	3	3	Sortilin,	neurotensin	receptor	3,
PSII_BNR	PF14870.6	gi|345004187|ref|YP_004807040.1|	-	1.5e-06	27.7	2.9	0.0034	16.7	0.0	2.9	2	1	0	2	2	2	2	Photosynthesis	system	II	assembly	factor	YCF48
BNR_2	PF13088.6	gi|345004187|ref|YP_004807040.1|	-	0.024	13.9	0.5	2.7	7.2	0.0	2.9	2	1	1	3	3	3	0	BNR	repeat-like	domain
BNR	PF02012.20	gi|345004187|ref|YP_004807040.1|	-	0.11	12.6	0.3	0.11	12.6	0.3	4.9	5	0	0	5	5	5	0	BNR/Asp-box	repeat
XPB_DRD	PF18458.1	gi|345004187|ref|YP_004807040.1|	-	0.42	10.5	2.6	34	4.4	0.0	3.4	3	0	0	3	3	3	0	Xeroderma	pigmentosum	group	B	helicase	damage	recognition	domain
TAT_signal	PF10518.9	gi|345004188|ref|YP_004807041.1|	-	0.015	15.1	3.1	0.028	14.3	3.1	1.5	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
UvrA_inter	PF17760.1	gi|345004189|ref|YP_004807042.1|	-	2.4e-35	120.9	0.2	1.3e-34	118.5	0.0	2.4	3	0	0	3	3	1	1	UvrA	interaction	domain
UvrA_DNA-bind	PF17755.1	gi|345004189|ref|YP_004807042.1|	-	2.9e-28	98.4	0.7	1.8e-26	92.6	0.3	3.2	3	0	0	3	3	3	1	UvrA	DNA-binding	domain
ABC_tran	PF00005.27	gi|345004189|ref|YP_004807042.1|	-	1.8e-20	73.8	0.0	5.9e-11	43.0	0.0	4.4	3	2	0	3	3	3	3	ABC	transporter
SMC_N	PF02463.19	gi|345004189|ref|YP_004807042.1|	-	1.6e-11	44.1	0.0	0.084	12.3	0.0	4.1	4	0	0	4	4	4	4	RecF/RecN/SMC	N	terminal	domain
AAA_29	PF13555.6	gi|345004189|ref|YP_004807042.1|	-	8e-08	31.9	0.0	0.0045	16.7	0.0	2.4	2	0	0	2	2	2	2	P-loop	containing	region	of	AAA	domain
AAA_16	PF13191.6	gi|345004189|ref|YP_004807042.1|	-	9.6e-06	26.1	0.2	0.37	11.2	0.0	3.5	4	0	0	4	4	4	2	AAA	ATPase	domain
AAA_22	PF13401.6	gi|345004189|ref|YP_004807042.1|	-	1.4e-05	25.4	0.0	0.15	12.3	0.0	3.3	3	0	0	3	3	2	2	AAA	domain
RsgA_GTPase	PF03193.16	gi|345004189|ref|YP_004807042.1|	-	4.5e-05	23.4	0.0	0.2	11.6	0.0	2.4	2	0	0	2	2	2	2	RsgA	GTPase
AAA_21	PF13304.6	gi|345004189|ref|YP_004807042.1|	-	5.5e-05	23.1	6.0	0.034	13.9	0.0	4.2	4	0	0	4	4	4	1	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_25	PF13481.6	gi|345004189|ref|YP_004807042.1|	-	0.0001	22.0	0.1	0.51	9.9	0.0	3.1	3	0	0	3	3	3	2	AAA	domain
AAA_23	PF13476.6	gi|345004189|ref|YP_004807042.1|	-	0.00015	22.4	0.1	0.042	14.3	0.0	2.9	3	0	0	3	3	2	1	AAA	domain
DnaJ_CXXCXGXG	PF00684.19	gi|345004189|ref|YP_004807042.1|	-	0.00018	21.8	10.8	0.0092	16.3	1.3	3.9	4	0	0	4	4	4	1	DnaJ	central	domain
ATPase	PF06745.13	gi|345004189|ref|YP_004807042.1|	-	0.00051	19.5	0.0	0.15	11.4	0.0	2.9	3	0	0	3	3	3	1	KaiC
AAA_15	PF13175.6	gi|345004189|ref|YP_004807042.1|	-	0.0013	18.5	0.0	0.2	11.3	0.0	3.5	4	0	0	4	4	4	1	AAA	ATPase	domain
AAA_33	PF13671.6	gi|345004189|ref|YP_004807042.1|	-	0.0024	18.1	0.0	2.9	8.1	0.0	3.6	3	0	0	3	3	3	1	AAA	domain
AAA_18	PF13238.6	gi|345004189|ref|YP_004807042.1|	-	0.0042	17.6	0.5	2.5	8.7	0.0	3.2	3	0	0	3	3	2	1	AAA	domain
Zn-ribbon_8	PF09723.10	gi|345004189|ref|YP_004807042.1|	-	0.0045	17.1	17.0	0.22	11.7	1.1	4.5	4	0	0	4	4	4	1	Zinc	ribbon	domain
APS_kinase	PF01583.20	gi|345004189|ref|YP_004807042.1|	-	0.0085	16.0	0.1	6	6.7	0.0	2.9	2	0	0	2	2	2	0	Adenylylsulphate	kinase
cobW	PF02492.19	gi|345004189|ref|YP_004807042.1|	-	0.01	15.5	0.0	0.95	9.0	0.0	2.4	2	0	0	2	2	2	1	CobW/HypB/UreG,	nucleotide-binding	domain
AAA_14	PF13173.6	gi|345004189|ref|YP_004807042.1|	-	0.011	15.7	0.0	2.8	8.0	0.0	3.2	3	0	0	3	3	3	0	AAA	domain
DUF2075	PF09848.9	gi|345004189|ref|YP_004807042.1|	-	0.013	14.8	0.1	5.1	6.2	0.0	2.5	2	0	0	2	2	2	0	Uncharacterized	conserved	protein	(DUF2075)
Viral_helicase1	PF01443.18	gi|345004189|ref|YP_004807042.1|	-	0.018	14.8	0.3	0.78	9.4	0.0	2.7	3	0	0	3	3	3	0	Viral	(Superfamily	1)	RNA	helicase
NACHT	PF05729.12	gi|345004189|ref|YP_004807042.1|	-	0.031	14.2	0.0	1.2	9.1	0.0	2.4	2	0	0	2	2	2	0	NACHT	domain
AAA_30	PF13604.6	gi|345004189|ref|YP_004807042.1|	-	0.054	13.2	0.6	4.7	6.9	0.1	3.0	3	0	0	3	3	3	0	AAA	domain
NMDAR2_C	PF10565.9	gi|345004189|ref|YP_004807042.1|	-	0.099	11.5	0.0	0.14	11.0	0.0	1.2	1	0	0	1	1	1	0	N-methyl	D-aspartate	receptor	2B3	C-terminus
Pilus_CpaD	PF09476.10	gi|345004189|ref|YP_004807042.1|	-	0.13	12.0	0.1	18	5.0	0.0	3.5	4	0	0	4	4	4	0	Pilus	biogenesis	CpaD	protein	(pilus_cpaD)
RNA_helicase	PF00910.22	gi|345004189|ref|YP_004807042.1|	-	0.23	11.9	0.1	5.8	7.4	0.0	2.4	2	0	0	2	2	2	0	RNA	helicase
DUF87	PF01935.17	gi|345004189|ref|YP_004807042.1|	-	0.66	10.0	2.7	0.78	9.8	0.0	2.4	3	0	0	3	3	2	0	Helicase	HerA,	central	domain
Zn_Tnp_IS91	PF14319.6	gi|345004189|ref|YP_004807042.1|	-	1.3	9.2	5.3	9.5	6.3	0.0	3.3	4	0	0	4	4	3	0	Transposase	zinc-binding	domain
DZR	PF12773.7	gi|345004189|ref|YP_004807042.1|	-	1.4	9.0	9.2	17	5.5	0.4	4.0	4	0	0	4	4	4	0	Double	zinc	ribbon
Anti-TRAP	PF15777.5	gi|345004189|ref|YP_004807042.1|	-	2.5	8.1	11.4	16	5.5	0.0	4.3	4	0	0	4	4	4	0	Tryptophan	RNA-binding	attenuator	protein	inhibitory	protein
T2SSE	PF00437.20	gi|345004190|ref|YP_004807043.1|	-	2.3e-11	43.3	0.1	4.1e-11	42.5	0.1	1.3	1	0	0	1	1	1	1	Type	II/IV	secretion	system	protein
KH_1	PF00013.29	gi|345004190|ref|YP_004807043.1|	-	1.1e-05	25.1	0.5	3.4e-05	23.6	0.5	1.9	1	0	0	1	1	1	1	KH	domain
AAA_16	PF13191.6	gi|345004190|ref|YP_004807043.1|	-	0.00052	20.4	0.0	0.0013	19.1	0.0	1.7	1	0	0	1	1	1	1	AAA	ATPase	domain
KH_2	PF07650.17	gi|345004190|ref|YP_004807043.1|	-	0.00067	19.4	0.6	0.0017	18.1	0.6	1.6	1	0	0	1	1	1	1	KH	domain
Zeta_toxin	PF06414.12	gi|345004190|ref|YP_004807043.1|	-	0.001	18.4	0.0	0.0022	17.3	0.0	1.4	1	0	0	1	1	1	1	Zeta	toxin
Thymidylate_kin	PF02223.17	gi|345004190|ref|YP_004807043.1|	-	0.0012	18.6	0.0	0.0053	16.5	0.0	1.9	1	1	1	2	2	2	1	Thymidylate	kinase
PIN	PF01850.21	gi|345004190|ref|YP_004807043.1|	-	0.0014	19.2	0.0	0.0031	18.0	0.0	1.7	1	0	0	1	1	1	1	PIN	domain
IstB_IS21	PF01695.17	gi|345004190|ref|YP_004807043.1|	-	0.0032	17.2	0.0	0.0057	16.4	0.0	1.4	1	0	0	1	1	1	1	IstB-like	ATP	binding	protein
NTPase_1	PF03266.15	gi|345004190|ref|YP_004807043.1|	-	0.0033	17.3	0.0	0.008	16.1	0.0	1.7	1	0	0	1	1	1	1	NTPase
AAA_18	PF13238.6	gi|345004190|ref|YP_004807043.1|	-	0.0055	17.2	0.0	0.018	15.6	0.0	1.9	2	0	0	2	2	1	1	AAA	domain
AAA	PF00004.29	gi|345004190|ref|YP_004807043.1|	-	0.009	16.4	0.0	0.019	15.4	0.0	1.5	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_29	PF13555.6	gi|345004190|ref|YP_004807043.1|	-	0.019	14.7	0.0	0.049	13.4	0.0	1.6	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
AAA_5	PF07728.14	gi|345004190|ref|YP_004807043.1|	-	0.022	14.8	0.0	0.045	13.7	0.0	1.5	1	0	0	1	1	1	0	AAA	domain	(dynein-related	subfamily)
AAA_33	PF13671.6	gi|345004190|ref|YP_004807043.1|	-	0.024	14.8	0.0	0.066	13.4	0.0	1.8	2	0	0	2	2	1	0	AAA	domain
AAA_14	PF13173.6	gi|345004190|ref|YP_004807043.1|	-	0.027	14.5	0.0	0.062	13.3	0.0	1.6	1	0	0	1	1	1	0	AAA	domain
ATP_bind_1	PF03029.17	gi|345004190|ref|YP_004807043.1|	-	0.03	14.1	0.0	0.052	13.3	0.0	1.3	1	0	0	1	1	1	0	Conserved	hypothetical	ATP	binding	protein
KTI12	PF08433.10	gi|345004190|ref|YP_004807043.1|	-	0.04	13.4	0.0	0.072	12.5	0.0	1.4	1	0	0	1	1	1	0	Chromatin	associated	protein	KTI12
FliMN_C	PF01052.20	gi|345004190|ref|YP_004807043.1|	-	0.042	13.8	0.1	0.18	11.8	0.1	2.1	1	0	0	1	1	1	0	Type	III	flagellar	switch	regulator	(C-ring)	FliN	C-term
AAA_30	PF13604.6	gi|345004190|ref|YP_004807043.1|	-	0.042	13.6	0.0	0.099	12.3	0.0	1.6	1	0	0	1	1	1	0	AAA	domain
ATPase	PF06745.13	gi|345004190|ref|YP_004807043.1|	-	0.043	13.2	0.0	0.11	11.9	0.0	1.6	2	0	0	2	2	1	0	KaiC
AAA_7	PF12775.7	gi|345004190|ref|YP_004807043.1|	-	0.044	13.3	0.0	0.076	12.5	0.0	1.3	1	0	0	1	1	1	0	P-loop	containing	dynein	motor	region
KH_5	PF13184.6	gi|345004190|ref|YP_004807043.1|	-	0.097	12.8	0.8	0.56	10.3	0.2	2.5	2	0	0	2	2	2	0	NusA-like	KH	domain
NACHT	PF05729.12	gi|345004190|ref|YP_004807043.1|	-	0.1	12.5	0.0	0.17	11.8	0.0	1.3	1	0	0	1	1	1	0	NACHT	domain
RuvB_N	PF05496.12	gi|345004190|ref|YP_004807043.1|	-	0.1	12.3	0.0	0.24	11.1	0.0	1.6	1	0	0	1	1	1	0	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
APS_kinase	PF01583.20	gi|345004190|ref|YP_004807043.1|	-	0.12	12.2	0.0	0.23	11.3	0.0	1.4	1	0	0	1	1	1	0	Adenylylsulphate	kinase
VraX	PF17412.2	gi|345004190|ref|YP_004807043.1|	-	0.16	11.7	0.2	0.42	10.3	0.1	1.7	2	0	0	2	2	1	0	Family	of	unknown	function
KH_4	PF13083.6	gi|345004190|ref|YP_004807043.1|	-	0.17	11.8	2.1	0.31	10.9	0.6	2.3	2	0	0	2	2	2	0	KH	domain
Peptidase_M20	PF01546.28	gi|345004191|ref|YP_004807044.1|	-	9.3e-29	100.6	3.4	1.1e-28	100.3	3.4	1.1	1	0	0	1	1	1	1	Peptidase	family	M20/M25/M40
M20_dimer	PF07687.14	gi|345004191|ref|YP_004807044.1|	-	9.8e-15	54.4	0.6	2.4e-14	53.2	0.1	1.9	2	0	0	2	2	2	1	Peptidase	dimerisation	domain
DDE_Tnp_1	PF01609.21	gi|345004193|ref|YP_004807046.1|	-	0.049	13.3	0.0	0.24	11.0	0.0	2.0	1	1	0	1	1	1	0	Transposase	DDE	domain
AAA_15	PF13175.6	gi|345004194|ref|YP_004807047.1|	-	3.6e-10	40.1	0.2	4.8e-10	39.7	0.2	1.1	1	0	0	1	1	1	1	AAA	ATPase	domain
AAA_23	PF13476.6	gi|345004194|ref|YP_004807047.1|	-	1.3e-07	32.3	0.4	1.5e-07	32.1	0.4	1.2	1	0	0	1	1	1	1	AAA	domain
SMC_N	PF02463.19	gi|345004194|ref|YP_004807047.1|	-	6.9e-07	28.9	0.5	1.9e-06	27.5	0.0	1.8	1	1	1	2	2	2	1	RecF/RecN/SMC	N	terminal	domain
DUF2813	PF11398.8	gi|345004194|ref|YP_004807047.1|	-	1.7e-05	24.3	0.2	3.9e-05	23.1	0.0	1.6	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF2813)
AAA_21	PF13304.6	gi|345004194|ref|YP_004807047.1|	-	4.2e-05	23.5	0.4	7e-05	22.8	0.3	1.6	1	1	0	1	1	1	1	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_29	PF13555.6	gi|345004194|ref|YP_004807047.1|	-	6.3e-05	22.6	0.0	0.00012	21.7	0.0	1.5	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
ATPase_2	PF01637.18	gi|345004194|ref|YP_004807047.1|	-	0.042	13.8	0.1	0.086	12.7	0.1	1.7	1	1	0	1	1	1	0	ATPase	domain	predominantly	from	Archaea
AAA_27	PF13514.6	gi|345004194|ref|YP_004807047.1|	-	0.052	13.1	0.0	0.096	12.3	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
AAA_7	PF12775.7	gi|345004194|ref|YP_004807047.1|	-	0.1	12.1	0.1	0.19	11.2	0.1	1.5	1	0	0	1	1	1	0	P-loop	containing	dynein	motor	region
PUA	PF01472.20	gi|345004195|ref|YP_004807048.1|	-	4.1e-19	68.3	3.9	6.2e-19	67.7	3.9	1.3	1	0	0	1	1	1	1	PUA	domain
UPF0113	PF03657.13	gi|345004195|ref|YP_004807048.1|	-	0.0025	18.0	0.1	0.0038	17.4	0.1	1.3	1	0	0	1	1	1	1	UPF0113	PUA	domain
GATA	PF00320.27	gi|345004196|ref|YP_004807049.1|	-	0.00059	19.4	1.5	0.052	13.2	0.3	2.3	2	0	0	2	2	2	2	GATA	zinc	finger
Phage_lysozyme2	PF18013.1	gi|345004196|ref|YP_004807049.1|	-	0.17	11.9	0.0	0.2	11.7	0.0	1.0	1	0	0	1	1	1	0	Phage	tail	lysozyme
RNB	PF00773.19	gi|345004197|ref|YP_004807050.1|	-	8.3e-81	271.8	0.0	1.7e-79	267.5	0.0	2.1	1	1	0	1	1	1	1	RNB	domain
DUF982	PF06169.12	gi|345004197|ref|YP_004807050.1|	-	0.0056	16.7	0.0	0.016	15.2	0.0	1.8	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF982)
zinc_ribbon_5	PF13719.6	gi|345004198|ref|YP_004807051.1|	-	0.085	12.6	0.1	0.12	12.2	0.1	1.2	1	0	0	1	1	1	0	zinc-ribbon	domain
DUF1068	PF06364.12	gi|345004198|ref|YP_004807051.1|	-	0.16	11.9	0.1	0.17	11.8	0.1	1.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1068)
CRISPR_Cas2	PF09827.9	gi|345004200|ref|YP_004807053.1|	-	1.6e-20	73.1	0.1	1.8e-20	72.9	0.1	1.0	1	0	0	1	1	1	1	CRISPR	associated	protein	Cas2
Cas_Cas1	PF01867.16	gi|345004201|ref|YP_004807054.1|	-	2.4e-78	263.2	0.0	2.8e-78	262.9	0.0	1.1	1	0	0	1	1	1	1	CRISPR	associated	protein	Cas1
Cas_Cas4	PF01930.17	gi|345004202|ref|YP_004807055.1|	-	1.2e-24	87.3	0.1	1.3e-24	87.1	0.1	1.0	1	0	0	1	1	1	1	Domain	of	unknown	function	DUF83
PDDEXK_1	PF12705.7	gi|345004202|ref|YP_004807055.1|	-	1.1e-08	35.3	4.5	5e-08	33.2	0.5	2.0	1	1	1	2	2	2	2	PD-(D/E)XK	nuclease	superfamily
Csa1	PF06023.12	gi|345004202|ref|YP_004807055.1|	-	0.0013	18.2	0.2	0.0032	16.9	0.1	1.7	1	1	0	2	2	2	1	CRISPR-associated	exonuclease	Csa1
PDDEXK_4	PF14281.6	gi|345004202|ref|YP_004807055.1|	-	0.068	13.3	0.1	0.083	13.0	0.1	1.2	1	0	0	1	1	1	0	PD-(D/E)XK	nuclease	superfamily
DEAD	PF00270.29	gi|345004203|ref|YP_004807056.1|	-	4.4e-11	42.9	0.0	8.3e-11	42.0	0.0	1.4	1	0	0	1	1	1	1	DEAD/DEAH	box	helicase
ResIII	PF04851.15	gi|345004203|ref|YP_004807056.1|	-	4.5e-09	36.6	0.0	8.8e-09	35.6	0.0	1.5	1	0	0	1	1	1	1	Type	III	restriction	enzyme,	res	subunit
Helicase_C	PF00271.31	gi|345004203|ref|YP_004807056.1|	-	0.036	14.4	0.0	0.27	11.6	0.0	2.4	2	1	0	2	2	2	0	Helicase	conserved	C-terminal	domain
AAA_30	PF13604.6	gi|345004203|ref|YP_004807056.1|	-	0.22	11.2	0.0	0.4	10.4	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
Csc2	PF18320.1	gi|345004205|ref|YP_004807058.1|	-	2.2e-24	86.0	0.2	2.7e-24	85.7	0.2	1.1	1	0	0	1	1	1	1	Csc2	Crispr
CRISPR_Cas6	PF10040.9	gi|345004207|ref|YP_004807060.1|	-	9.6e-14	51.8	0.0	1.6e-13	51.1	0.0	1.4	1	0	0	1	1	1	1	CRISPR-associated	endoribonuclease	Cas6
HTH_IclR	PF09339.10	gi|345004208|ref|YP_004807061.1|	-	9.8e-05	22.1	0.0	0.00024	20.8	0.0	1.7	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
HTH_24	PF13412.6	gi|345004208|ref|YP_004807061.1|	-	0.00019	20.9	0.0	0.00034	20.1	0.0	1.5	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_20	PF12840.7	gi|345004208|ref|YP_004807061.1|	-	0.00026	21.0	0.0	0.00059	19.8	0.0	1.7	1	0	0	1	1	1	1	Helix-turn-helix	domain
MarR_2	PF12802.7	gi|345004208|ref|YP_004807061.1|	-	0.00081	19.2	0.0	0.0019	18.0	0.0	1.6	1	0	0	1	1	1	1	MarR	family
MarR	PF01047.22	gi|345004208|ref|YP_004807061.1|	-	0.0047	16.8	0.1	0.0095	15.8	0.1	1.5	1	0	0	1	1	1	1	MarR	family
HTH_11	PF08279.12	gi|345004208|ref|YP_004807061.1|	-	0.0088	16.0	0.1	0.02	14.9	0.1	1.6	1	0	0	1	1	1	1	HTH	domain
HTH_29	PF13551.6	gi|345004208|ref|YP_004807061.1|	-	0.0091	16.0	0.0	0.016	15.2	0.0	1.4	1	0	0	1	1	1	1	Winged	helix-turn	helix
HTH_23	PF13384.6	gi|345004208|ref|YP_004807061.1|	-	0.01	15.6	0.0	0.019	14.7	0.0	1.4	1	0	0	1	1	1	0	Homeodomain-like	domain
HTH_40	PF14493.6	gi|345004208|ref|YP_004807061.1|	-	0.023	15.1	0.1	0.19	12.2	0.1	2.3	1	1	1	2	2	2	0	Helix-turn-helix	domain
HTH_7	PF02796.15	gi|345004208|ref|YP_004807061.1|	-	0.028	14.5	0.1	0.059	13.5	0.1	1.5	1	0	0	1	1	1	0	Helix-turn-helix	domain	of	resolvase
HTH_Crp_2	PF13545.6	gi|345004208|ref|YP_004807061.1|	-	0.091	12.8	0.1	0.22	11.5	0.1	1.7	1	0	0	1	1	1	0	Crp-like	helix-turn-helix	domain
HTH_36	PF13730.6	gi|345004208|ref|YP_004807061.1|	-	0.14	12.2	0.0	0.24	11.4	0.0	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain
Ribosomal_S10	PF00338.22	gi|345004209|ref|YP_004807062.1|	-	9.5e-25	86.7	0.0	1.1e-24	86.5	0.0	1.0	1	0	0	1	1	1	1	Ribosomal	protein	S10p/S20e
GTP_EFTU	PF00009.27	gi|345004210|ref|YP_004807063.1|	-	2.6e-56	190.3	0.0	3.3e-56	189.9	0.0	1.1	1	0	0	1	1	1	1	Elongation	factor	Tu	GTP	binding	domain
GTP_EFTU_D3	PF03143.17	gi|345004210|ref|YP_004807063.1|	-	5.1e-38	129.8	0.1	1.4e-37	128.4	0.0	1.8	2	0	0	2	2	2	1	Elongation	factor	Tu	C-terminal	domain
GTP_EFTU_D2	PF03144.25	gi|345004210|ref|YP_004807063.1|	-	4.6e-15	55.8	3.0	2.8e-14	53.2	1.1	2.6	2	0	0	2	2	2	1	Elongation	factor	Tu	domain	2
MMR_HSR1	PF01926.23	gi|345004210|ref|YP_004807063.1|	-	4.9e-07	29.8	0.1	3.3e-06	27.2	0.1	2.3	1	1	0	1	1	1	1	50S	ribosome-binding	GTPase
Gtr1_RagA	PF04670.12	gi|345004210|ref|YP_004807063.1|	-	0.0033	16.8	0.0	0.072	12.4	0.0	2.3	2	0	0	2	2	2	1	Gtr1/RagA	G	protein	conserved	region
RsgA_GTPase	PF03193.16	gi|345004210|ref|YP_004807063.1|	-	0.004	17.1	0.5	0.4	10.6	0.1	2.4	1	1	1	2	2	2	1	RsgA	GTPase
Septin	PF00735.18	gi|345004210|ref|YP_004807063.1|	-	0.0085	15.4	0.0	0.02	14.2	0.0	1.5	1	1	0	1	1	1	1	Septin
Dynamin_N	PF00350.23	gi|345004210|ref|YP_004807063.1|	-	0.011	15.9	0.1	1.7	8.6	0.1	2.4	1	1	0	1	1	1	0	Dynamin	family
SRPRB	PF09439.10	gi|345004210|ref|YP_004807063.1|	-	0.013	15.0	0.0	0.35	10.3	0.0	2.3	1	1	0	1	1	1	0	Signal	recognition	particle	receptor	beta	subunit
FeoB_N	PF02421.18	gi|345004210|ref|YP_004807063.1|	-	0.026	14.0	0.1	0.36	10.4	0.0	2.4	2	1	0	2	2	2	0	Ferrous	iron	transport	protein	B
GTP_EFTU_D4	PF14578.6	gi|345004210|ref|YP_004807063.1|	-	0.041	13.8	0.7	0.11	12.4	0.7	1.7	1	0	0	1	1	1	0	Elongation	factor	Tu	domain	4
Ras	PF00071.22	gi|345004210|ref|YP_004807063.1|	-	0.041	13.5	0.4	0.25	10.9	0.1	2.2	2	1	0	2	2	2	0	Ras	family
Homoserine_dh	PF00742.19	gi|345004211|ref|YP_004807064.1|	-	2.1e-46	158.0	0.1	3e-46	157.5	0.1	1.2	1	0	0	1	1	1	1	Homoserine	dehydrogenase
ELFV_dehydrog	PF00208.21	gi|345004211|ref|YP_004807064.1|	-	4.9e-06	26.4	0.0	7.6e-06	25.8	0.0	1.4	1	0	0	1	1	1	1	Glutamate/Leucine/Phenylalanine/Valine	dehydrogenase
NAD_binding_3	PF03447.16	gi|345004211|ref|YP_004807064.1|	-	1.4e-05	25.7	0.3	3.6e-05	24.4	0.3	1.7	1	0	0	1	1	1	1	Homoserine	dehydrogenase,	NAD	binding	domain
2-Hacid_dh_C	PF02826.19	gi|345004211|ref|YP_004807064.1|	-	0.034	13.5	0.1	0.057	12.8	0.1	1.3	1	0	0	1	1	1	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
ACT	PF01842.25	gi|345004212|ref|YP_004807065.1|	-	0.00045	19.9	0.2	0.038	13.8	0.0	2.8	3	1	1	4	4	4	2	ACT	domain
GTP_EFTU	PF00009.27	gi|345004213|ref|YP_004807066.1|	-	8.8e-64	214.6	0.8	1.5e-63	213.9	0.8	1.4	1	0	0	1	1	1	1	Elongation	factor	Tu	GTP	binding	domain
EFG_C	PF00679.24	gi|345004213|ref|YP_004807066.1|	-	3.7e-24	84.6	0.1	4.8e-23	81.0	0.0	2.6	2	0	0	2	2	2	1	Elongation	factor	G	C-terminus
EFG_IV	PF03764.18	gi|345004213|ref|YP_004807066.1|	-	5.8e-23	81.0	0.0	1.6e-22	79.6	0.0	1.8	1	0	0	1	1	1	1	Elongation	factor	G,	domain	IV
EFG_II	PF14492.6	gi|345004213|ref|YP_004807066.1|	-	2.7e-22	78.7	0.6	1.1e-21	76.7	0.6	2.1	1	0	0	1	1	1	1	Elongation	Factor	G,	domain	II
GTP_EFTU_D2	PF03144.25	gi|345004213|ref|YP_004807066.1|	-	7.2e-15	55.1	2.5	1.5e-14	54.1	0.7	2.7	3	0	0	3	3	3	1	Elongation	factor	Tu	domain	2
MMR_HSR1	PF01926.23	gi|345004213|ref|YP_004807066.1|	-	2.5e-05	24.3	1.1	0.00014	21.9	0.1	2.6	2	0	0	2	2	2	1	50S	ribosome-binding	GTPase
RsgA_GTPase	PF03193.16	gi|345004213|ref|YP_004807066.1|	-	0.012	15.5	0.4	0.18	11.7	0.0	2.7	3	0	0	3	3	3	0	RsgA	GTPase
RF3_C	PF16658.5	gi|345004213|ref|YP_004807066.1|	-	0.042	13.7	0.1	0.087	12.6	0.1	1.5	1	0	0	1	1	1	0	Class	II	release	factor	RF3,	C-terminal	domain
SRPRB	PF09439.10	gi|345004213|ref|YP_004807066.1|	-	0.09	12.2	0.1	0.45	9.9	0.1	2.1	1	1	0	1	1	1	0	Signal	recognition	particle	receptor	beta	subunit
DR2241	PF18069.1	gi|345004215|ref|YP_004807068.1|	-	0.29	11.0	3.6	7.6	6.4	0.1	3.0	2	1	1	3	3	3	0	DR2241	stabilising	domain
GSDH	PF07995.11	gi|345004216|ref|YP_004807069.1|	-	4.2e-68	230.1	0.0	5.9e-68	229.6	0.0	1.1	1	0	0	1	1	1	1	Glucose	/	Sorbosone	dehydrogenase
DUF3558	PF12079.8	gi|345004216|ref|YP_004807069.1|	-	0.027	14.5	3.4	0.046	13.7	3.4	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3558)
HAD_2	PF13419.6	gi|345004217|ref|YP_004807070.1|	-	8.1e-27	94.4	0.0	1.2e-26	93.9	0.0	1.2	1	0	0	1	1	1	1	Haloacid	dehalogenase-like	hydrolase
Hydrolase	PF00702.26	gi|345004217|ref|YP_004807070.1|	-	8.3e-17	62.2	0.0	1.3e-16	61.5	0.0	1.3	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Hydrolase_like	PF13242.6	gi|345004217|ref|YP_004807070.1|	-	1.9e-14	53.5	0.1	5.8e-14	51.9	0.0	1.9	2	1	0	2	2	2	1	HAD-hyrolase-like
HAD	PF12710.7	gi|345004217|ref|YP_004807070.1|	-	0.00035	21.0	0.4	0.0011	19.4	0.4	1.8	1	1	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Hydrolase_6	PF13344.6	gi|345004217|ref|YP_004807070.1|	-	0.002	18.2	0.0	0.0052	16.9	0.0	1.9	1	1	0	1	1	1	1	Haloacid	dehalogenase-like	hydrolase
Acid_PPase	PF12689.7	gi|345004217|ref|YP_004807070.1|	-	0.036	13.9	0.0	7.9	6.3	0.0	2.2	2	0	0	2	2	2	0	Acid	Phosphatase
Aldolase_II	PF00596.21	gi|345004218|ref|YP_004807071.1|	-	5.5e-39	134.0	2.1	6.9e-39	133.7	2.1	1.1	1	0	0	1	1	1	1	Class	II	Aldolase	and	Adducin	N-terminal	domain
HalOD1	PF18545.1	gi|345004219|ref|YP_004807072.1|	-	3.2e-20	72.2	0.5	4.1e-20	71.8	0.5	1.2	1	0	0	1	1	1	1	Halobacterial	output	domain	1
Ribosomal_S7	PF00177.21	gi|345004220|ref|YP_004807073.1|	-	1e-34	119.4	2.1	1.2e-34	119.1	2.1	1.0	1	0	0	1	1	1	1	Ribosomal	protein	S7p/S5e
DUF1722	PF08349.11	gi|345004220|ref|YP_004807073.1|	-	0.14	12.5	0.1	0.22	11.8	0.1	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1722)
Ribosom_S12_S23	PF00164.25	gi|345004221|ref|YP_004807074.1|	-	1.4e-50	169.7	0.5	1.8e-50	169.3	0.5	1.1	1	0	0	1	1	1	1	Ribosomal	protein	S12/S23
KH_5	PF13184.6	gi|345004222|ref|YP_004807075.1|	-	1e-09	38.4	0.2	3.7e-09	36.5	0.0	2.0	3	0	0	3	3	3	1	NusA-like	KH	domain
KH_2	PF07650.17	gi|345004222|ref|YP_004807075.1|	-	3.9e-08	33.0	0.0	0.00024	20.9	0.0	2.1	2	0	0	2	2	2	2	KH	domain
KH_1	PF00013.29	gi|345004222|ref|YP_004807075.1|	-	0.0012	18.6	0.0	0.016	15.1	0.0	2.1	1	1	1	2	2	2	1	KH	domain
RNA_pol_Rpb1_5	PF04998.17	gi|345004223|ref|YP_004807076.1|	-	5.6e-52	176.8	1.1	7.1e-52	176.5	1.1	1.1	1	0	0	1	1	1	1	RNA	polymerase	Rpb1,	domain	5
RNA_pol_Rpb1_1	PF04997.12	gi|345004224|ref|YP_004807077.1|	-	1.6e-106	356.1	0.0	2.8e-106	355.4	0.0	1.4	1	0	0	1	1	1	1	RNA	polymerase	Rpb1,	domain	1
RNA_pol_Rpb1_2	PF00623.20	gi|345004224|ref|YP_004807077.1|	-	1.8e-67	226.7	0.3	3.3e-67	225.8	0.3	1.5	1	0	0	1	1	1	1	RNA	polymerase	Rpb1,	domain	2
RNA_pol_Rpb1_4	PF05000.17	gi|345004224|ref|YP_004807077.1|	-	2.1e-31	108.0	0.0	4.8e-31	106.9	0.0	1.6	1	0	0	1	1	1	1	RNA	polymerase	Rpb1,	domain	4
RNA_pol_Rpb1_3	PF04983.18	gi|345004224|ref|YP_004807077.1|	-	6e-31	107.5	0.0	1.1e-30	106.7	0.0	1.5	1	0	0	1	1	1	1	RNA	polymerase	Rpb1,	domain	3
RNA_pol_Rpb1_5	PF04998.17	gi|345004224|ref|YP_004807077.1|	-	9.2e-27	94.1	0.0	2e-26	93.0	0.0	1.5	1	0	0	1	1	1	1	RNA	polymerase	Rpb1,	domain	5
HTH_3	PF01381.22	gi|345004224|ref|YP_004807077.1|	-	1.3e-05	25.1	0.0	4.1e-05	23.6	0.0	1.9	1	0	0	1	1	1	1	Helix-turn-helix
HTH_31	PF13560.6	gi|345004224|ref|YP_004807077.1|	-	0.0001	22.6	0.0	0.00039	20.7	0.0	2.1	1	1	0	1	1	1	1	Helix-turn-helix	domain
HTH_24	PF13412.6	gi|345004224|ref|YP_004807077.1|	-	0.072	12.7	0.0	0.24	11.0	0.0	2.0	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
RNA_pol_Rpb2_6	PF00562.28	gi|345004225|ref|YP_004807078.1|	-	3.4e-129	431.3	0.2	6.3e-129	430.4	0.0	1.5	2	0	0	2	2	2	1	RNA	polymerase	Rpb2,	domain	6
RNA_pol_Rpb2_7	PF04560.20	gi|345004225|ref|YP_004807078.1|	-	1.3e-24	86.4	0.0	2.4e-24	85.6	0.0	1.4	1	0	0	1	1	1	1	RNA	polymerase	Rpb2,	domain	7
RNA_pol_Rpb2_4	PF04566.13	gi|345004225|ref|YP_004807078.1|	-	3.4e-22	78.5	0.3	1.2e-21	76.8	0.2	2.0	2	0	0	2	2	2	1	RNA	polymerase	Rpb2,	domain	4
RNA_pol_Rpb2_5	PF04567.17	gi|345004225|ref|YP_004807078.1|	-	1.4e-09	38.3	2.8	7.6e-09	36.0	2.8	2.3	1	0	0	1	1	1	1	RNA	polymerase	Rpb2,	domain	5
RNA_pol_Rpb2_1	PF04563.15	gi|345004226|ref|YP_004807079.1|	-	6.6e-50	169.4	0.1	8.2e-50	169.1	0.1	1.1	1	0	0	1	1	1	1	RNA	polymerase	beta	subunit
RNA_pol_Rpb2_2	PF04561.14	gi|345004226|ref|YP_004807079.1|	-	3.8e-26	91.9	0.0	5.8e-26	91.3	0.0	1.2	1	0	0	1	1	1	1	RNA	polymerase	Rpb2,	domain	2
RNA_pol_Rpb2_3	PF04565.16	gi|345004226|ref|YP_004807079.1|	-	1e-24	86.4	0.0	2e-24	85.5	0.0	1.5	1	0	0	1	1	1	1	RNA	polymerase	Rpb2,	domain	3
RNA_pol_Rpb5_C	PF01191.19	gi|345004227|ref|YP_004807080.1|	-	2.7e-25	88.0	0.5	3e-25	87.9	0.5	1.0	1	0	0	1	1	1	1	RNA	polymerase	Rpb5,	C-terminal	domain
DHFR_1	PF00186.19	gi|345004228|ref|YP_004807081.1|	-	6.2e-35	120.3	0.0	7.3e-35	120.0	0.0	1.0	1	0	0	1	1	1	1	Dihydrofolate	reductase
APH	PF01636.23	gi|345004229|ref|YP_004807082.1|	-	1.4e-18	67.7	3.3	2.1e-18	67.2	3.3	1.3	1	0	0	1	1	1	1	Phosphotransferase	enzyme	family
Glyco_trans_2_3	PF13632.6	gi|345004230|ref|YP_004807083.1|	-	1.8e-12	47.6	0.8	3e-12	46.9	0.8	1.4	1	0	0	1	1	1	1	Glycosyl	transferase	family	group	2
Glyco_tranf_2_3	PF13641.6	gi|345004230|ref|YP_004807083.1|	-	0.045	13.6	0.7	0.28	11.0	0.6	2.0	1	1	0	1	1	1	0	Glycosyltransferase	like	family	2
DUF87	PF01935.17	gi|345004231|ref|YP_004807084.1|	-	1e-05	25.8	0.0	4.1e-05	23.8	0.0	1.8	1	1	1	2	2	2	1	Helicase	HerA,	central	domain
TrwB_AAD_bind	PF10412.9	gi|345004231|ref|YP_004807084.1|	-	6.9e-05	21.9	0.0	0.12	11.2	0.1	2.2	2	0	0	2	2	2	2	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
DUF853	PF05872.12	gi|345004231|ref|YP_004807084.1|	-	0.0013	17.4	0.1	0.56	8.7	0.1	2.1	2	0	0	2	2	2	2	Bacterial	protein	of	unknown	function	(DUF853)
Zeta_toxin	PF06414.12	gi|345004231|ref|YP_004807084.1|	-	0.0022	17.3	0.1	0.0042	16.4	0.1	1.3	1	0	0	1	1	1	1	Zeta	toxin
AAA_16	PF13191.6	gi|345004231|ref|YP_004807084.1|	-	0.013	15.9	8.0	0.026	14.9	4.6	2.5	2	1	0	2	2	2	0	AAA	ATPase	domain
AAA_30	PF13604.6	gi|345004231|ref|YP_004807084.1|	-	0.1	12.3	0.2	0.1	12.3	0.2	2.5	3	1	1	4	4	4	0	AAA	domain
FtsK_SpoIIIE	PF01580.18	gi|345004231|ref|YP_004807084.1|	-	0.12	11.7	0.3	2.3	7.5	0.0	2.3	2	0	0	2	2	2	0	FtsK/SpoIIIE	family
AAA_22	PF13401.6	gi|345004231|ref|YP_004807084.1|	-	0.14	12.4	0.0	18	5.6	0.0	2.6	3	0	0	3	3	3	0	AAA	domain
Big_1	PF02369.16	gi|345004232|ref|YP_004807085.1|	-	8.7e-07	28.9	4.1	1.1e-06	28.5	3.2	1.5	2	0	0	2	2	2	1	Bacterial	Ig-like	domain	(group	1)
CarboxypepD_reg	PF13620.6	gi|345004232|ref|YP_004807085.1|	-	5.4e-06	26.6	1.8	9.8e-06	25.8	1.8	1.5	1	0	0	1	1	1	1	Carboxypeptidase	regulatory-like	domain
Invasin_D3	PF09134.10	gi|345004232|ref|YP_004807085.1|	-	0.00012	22.4	3.9	0.00019	21.7	3.8	1.4	1	1	0	1	1	1	1	Invasin,	domain	3
YtkA	PF13115.6	gi|345004232|ref|YP_004807085.1|	-	0.00049	20.7	0.8	0.00079	20.0	0.7	1.4	1	1	0	1	1	1	1	YtkA-like
DUF824	PF05688.11	gi|345004232|ref|YP_004807085.1|	-	0.0027	17.5	0.2	0.0063	16.3	0.2	1.6	1	0	0	1	1	1	1	Salmonella	repeat	of	unknown	function	(DUF824)
DUF3720	PF12517.8	gi|345004232|ref|YP_004807085.1|	-	0.12	13.3	0.6	0.12	13.3	0.6	2.0	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF3720)
PCMT	PF01135.19	gi|345004233|ref|YP_004807086.1|	-	9.5e-30	103.9	0.0	1.1e-29	103.6	0.0	1.1	1	0	0	1	1	1	1	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
Methyltransf_25	PF13649.6	gi|345004233|ref|YP_004807086.1|	-	6.5e-06	26.8	0.0	1e-05	26.1	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.6	gi|345004233|ref|YP_004807086.1|	-	8.6e-06	25.6	0.0	1.1e-05	25.2	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
MTS	PF05175.14	gi|345004233|ref|YP_004807086.1|	-	0.0016	18.1	0.0	0.0022	17.6	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	small	domain
Methyltransf_11	PF08241.12	gi|345004233|ref|YP_004807086.1|	-	0.0051	17.4	0.0	0.0084	16.7	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
PrmA	PF06325.13	gi|345004233|ref|YP_004807086.1|	-	0.0062	16.0	0.0	0.0087	15.5	0.0	1.1	1	0	0	1	1	1	1	Ribosomal	protein	L11	methyltransferase	(PrmA)
Methyltransf_12	PF08242.12	gi|345004233|ref|YP_004807086.1|	-	0.012	16.4	0.0	0.022	15.5	0.0	1.5	1	0	0	1	1	1	0	Methyltransferase	domain
Methyltransf_23	PF13489.6	gi|345004233|ref|YP_004807086.1|	-	0.09	12.6	0.0	0.13	12.1	0.0	1.4	1	1	0	1	1	1	0	Methyltransferase	domain
Methyltransf_18	PF12847.7	gi|345004233|ref|YP_004807086.1|	-	0.13	12.2	0.0	0.17	11.8	0.0	1.2	1	0	0	1	1	1	0	Methyltransferase	domain
UPF0020	PF01170.18	gi|345004233|ref|YP_004807086.1|	-	0.22	11.2	0.0	0.34	10.6	0.0	1.3	1	0	0	1	1	1	0	Putative	RNA	methylase	family	UPF0020
Methyltransf_23	PF13489.6	gi|345004234|ref|YP_004807087.1|	-	0.002	18.0	0.0	0.0072	16.2	0.0	1.8	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_11	PF08241.12	gi|345004234|ref|YP_004807087.1|	-	0.011	16.3	0.0	0.046	14.4	0.0	2.1	1	1	0	1	1	1	0	Methyltransferase	domain
Methyltransf_25	PF13649.6	gi|345004234|ref|YP_004807087.1|	-	0.013	16.2	0.1	0.14	12.9	0.0	2.6	1	1	1	2	2	2	0	Methyltransferase	domain
P_C	PF06640.11	gi|345004234|ref|YP_004807087.1|	-	0.017	15.3	0.1	0.051	13.7	0.1	1.7	1	0	0	1	1	1	0	P	protein	C-terminus
YAcAr	PF10686.9	gi|345004234|ref|YP_004807087.1|	-	0.068	13.1	0.4	0.23	11.4	0.4	2.0	1	0	0	1	1	1	0	YspA,	cpYpsA-related	SLOG	family
PCMT	PF01135.19	gi|345004235|ref|YP_004807088.1|	-	2.3e-56	190.9	0.0	2.5e-56	190.7	0.0	1.0	1	0	0	1	1	1	1	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
Methyltransf_25	PF13649.6	gi|345004235|ref|YP_004807088.1|	-	1.6e-08	35.2	0.0	2.5e-08	34.5	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.6	gi|345004235|ref|YP_004807088.1|	-	3.4e-07	30.2	0.0	4.4e-07	29.8	0.0	1.1	1	0	0	1	1	1	1	Methyltransferase	domain
GCD14	PF08704.10	gi|345004235|ref|YP_004807088.1|	-	6.2e-05	22.8	0.0	8e-05	22.4	0.0	1.1	1	0	0	1	1	1	1	tRNA	methyltransferase	complex	GCD14	subunit
CMAS	PF02353.20	gi|345004235|ref|YP_004807088.1|	-	0.00018	20.9	0.0	0.00026	20.4	0.0	1.1	1	0	0	1	1	1	1	Mycolic	acid	cyclopropane	synthetase
RrnaAD	PF00398.20	gi|345004235|ref|YP_004807088.1|	-	0.00026	20.2	0.0	0.00038	19.6	0.0	1.2	1	0	0	1	1	1	1	Ribosomal	RNA	adenine	dimethylase
Methyltransf_11	PF08241.12	gi|345004235|ref|YP_004807088.1|	-	0.0014	19.2	0.0	0.0024	18.5	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Fibrillarin	PF01269.17	gi|345004235|ref|YP_004807088.1|	-	0.0016	17.6	0.0	0.0023	17.1	0.0	1.1	1	0	0	1	1	1	1	Fibrillarin
MTS	PF05175.14	gi|345004235|ref|YP_004807088.1|	-	0.014	14.9	0.0	0.021	14.4	0.0	1.2	1	0	0	1	1	1	0	Methyltransferase	small	domain
Methyltransf_32	PF13679.6	gi|345004235|ref|YP_004807088.1|	-	0.015	15.3	0.0	0.018	15.0	0.0	1.1	1	0	0	1	1	1	0	Methyltransferase	domain
Methyltransf_24	PF13578.6	gi|345004235|ref|YP_004807088.1|	-	0.016	16.2	0.0	0.027	15.5	0.0	1.4	1	0	0	1	1	1	0	Methyltransferase	domain
Methyltransf_23	PF13489.6	gi|345004235|ref|YP_004807088.1|	-	0.047	13.5	0.0	0.059	13.2	0.0	1.2	1	0	0	1	1	1	0	Methyltransferase	domain
MarR	PF01047.22	gi|345004235|ref|YP_004807088.1|	-	0.062	13.2	0.2	0.39	10.7	0.1	2.2	2	0	0	2	2	2	0	MarR	family
Methyltransf_3	PF01596.17	gi|345004235|ref|YP_004807088.1|	-	0.091	11.9	0.0	0.13	11.5	0.0	1.2	1	0	0	1	1	1	0	O-methyltransferase
Methyltransf_12	PF08242.12	gi|345004235|ref|YP_004807088.1|	-	0.099	13.4	0.0	0.15	12.8	0.0	1.3	1	0	0	1	1	1	0	Methyltransferase	domain
DUF938	PF06080.12	gi|345004235|ref|YP_004807088.1|	-	0.14	11.9	0.0	0.18	11.6	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF938)
DHHA1	PF02272.19	gi|345004236|ref|YP_004807089.1|	-	1.1e-12	48.5	1.7	2.2e-12	47.6	1.7	1.5	1	0	0	1	1	1	1	DHHA1	domain
DHH	PF01368.20	gi|345004236|ref|YP_004807089.1|	-	1.3e-10	41.4	0.0	2.4e-10	40.5	0.0	1.5	1	0	0	1	1	1	1	DHH	family
Aldo_ket_red	PF00248.21	gi|345004237|ref|YP_004807090.1|	-	4e-29	101.7	0.0	7.8e-27	94.2	0.0	2.6	1	1	0	1	1	1	1	Aldo/keto	reductase	family
PPDK_N	PF01326.19	gi|345004238|ref|YP_004807091.1|	-	6.2e-110	367.5	1.9	7.8e-110	367.2	0.3	1.8	2	0	0	2	2	2	1	Pyruvate	phosphate	dikinase,	PEP/pyruvate	binding	domain
PEP-utilizers_C	PF02896.18	gi|345004238|ref|YP_004807091.1|	-	1.3e-79	267.4	0.1	2e-79	266.8	0.1	1.2	1	0	0	1	1	1	1	PEP-utilising	enzyme,	TIM	barrel	domain
PEP-utilizers	PF00391.23	gi|345004238|ref|YP_004807091.1|	-	1.6e-27	95.0	3.9	3.7e-27	93.8	2.1	2.5	2	0	0	2	2	2	1	PEP-utilising	enzyme,	mobile	domain
HpcH_HpaI	PF03328.14	gi|345004238|ref|YP_004807091.1|	-	0.0038	16.4	0.1	0.0097	15.1	0.0	1.7	2	0	0	2	2	2	1	HpcH/HpaI	aldolase/citrate	lyase	family
PEP-utilisers_N	PF05524.13	gi|345004238|ref|YP_004807091.1|	-	0.0074	16.5	2.0	8.3	6.6	0.0	3.7	3	0	0	3	3	3	2	PEP-utilising	enzyme,	N-terminal
Aminotran_5	PF00266.19	gi|345004239|ref|YP_004807092.1|	-	9.9e-152	505.2	0.0	1.2e-151	504.9	0.0	1.1	1	0	0	1	1	1	1	Aminotransferase	class-V
NifU_N	PF01592.16	gi|345004239|ref|YP_004807092.1|	-	4.1e-12	46.3	0.0	9.1e-12	45.2	0.0	1.6	1	0	0	1	1	1	1	NifU-like	N	terminal	domain
DegT_DnrJ_EryC1	PF01041.17	gi|345004239|ref|YP_004807092.1|	-	1e-10	41.5	0.7	1.7e-10	40.7	0.7	1.3	1	0	0	1	1	1	1	DegT/DnrJ/EryC1/StrS	aminotransferase	family
Beta_elim_lyase	PF01212.21	gi|345004239|ref|YP_004807092.1|	-	4.1e-06	26.3	0.1	6.1e-06	25.7	0.1	1.3	1	0	0	1	1	1	1	Beta-eliminating	lyase
Cys_Met_Meta_PP	PF01053.20	gi|345004239|ref|YP_004807092.1|	-	0.00042	19.0	0.0	0.00067	18.3	0.0	1.2	1	0	0	1	1	1	1	Cys/Met	metabolism	PLP-dependent	enzyme
Pyridoxal_deC	PF00282.19	gi|345004239|ref|YP_004807092.1|	-	0.12	11.0	0.0	3.5	6.3	0.0	2.1	2	0	0	2	2	2	0	Pyridoxal-dependent	decarboxylase	conserved	domain
GATase	PF00117.28	gi|345004240|ref|YP_004807093.1|	-	3.2e-21	76.0	0.0	4.1e-21	75.6	0.0	1.0	1	0	0	1	1	1	1	Glutamine	amidotransferase	class-I
SNO	PF01174.19	gi|345004240|ref|YP_004807093.1|	-	5.5e-08	32.9	0.0	1.7e-07	31.3	0.0	1.6	1	1	0	1	1	1	1	SNO	glutamine	amidotransferase	family
GATase_3	PF07685.14	gi|345004240|ref|YP_004807093.1|	-	1.5e-05	24.7	0.0	3.1e-05	23.7	0.0	1.6	1	1	0	1	1	1	1	CobB/CobQ-like	glutamine	amidotransferase	domain
Peptidase_C26	PF07722.13	gi|345004240|ref|YP_004807093.1|	-	0.00094	19.0	0.0	0.12	12.1	0.0	2.2	2	0	0	2	2	2	2	Peptidase	C26
DJ-1_PfpI	PF01965.24	gi|345004240|ref|YP_004807093.1|	-	0.019	14.8	0.0	0.03	14.1	0.0	1.3	1	0	0	1	1	1	0	DJ-1/PfpI	family
DSBA	PF01323.20	gi|345004241|ref|YP_004807094.1|	-	1.6e-38	132.4	0.0	1.8e-38	132.3	0.0	1.0	1	0	0	1	1	1	1	DSBA-like	thioredoxin	domain
Thioredoxin_4	PF13462.6	gi|345004241|ref|YP_004807094.1|	-	7.2e-10	39.3	0.0	2.4e-07	31.1	0.0	2.3	2	1	0	2	2	2	2	Thioredoxin
Thioredoxin_2	PF13098.6	gi|345004241|ref|YP_004807094.1|	-	8.5e-07	29.4	0.1	0.00014	22.3	0.1	2.2	1	1	0	1	1	1	1	Thioredoxin-like	domain
Thioredoxin_5	PF13743.6	gi|345004241|ref|YP_004807094.1|	-	2.3e-06	27.4	0.0	1.3e-05	24.9	0.0	1.9	1	1	0	2	2	2	1	Thioredoxin
CarboxypepD_reg	PF13620.6	gi|345004242|ref|YP_004807095.1|	-	1.6e-22	79.6	34.0	1e-09	38.5	3.3	4.4	4	0	0	4	4	4	4	Carboxypeptidase	regulatory-like	domain
CarbopepD_reg_2	PF13715.6	gi|345004242|ref|YP_004807095.1|	-	1.2e-11	44.4	18.9	5.2e-05	23.2	0.5	4.5	3	1	1	4	4	4	3	CarboxypepD_reg-like	domain
PEGA	PF08308.11	gi|345004242|ref|YP_004807095.1|	-	7.9e-09	35.3	5.8	0.0038	17.1	0.1	4.1	3	1	0	3	3	3	2	PEGA	domain
SdrD_B	PF17210.3	gi|345004242|ref|YP_004807095.1|	-	2.5e-05	24.5	18.4	0.00052	20.2	0.4	3.9	3	1	1	4	4	4	2	SdrD	B-like	domain
DUF2012	PF09430.10	gi|345004242|ref|YP_004807095.1|	-	7.8e-05	22.8	1.2	0.0041	17.2	0.1	3.3	3	1	0	3	3	3	1	Protein	of	unknown	function	(DUF2012)
DUF4198	PF10670.9	gi|345004242|ref|YP_004807095.1|	-	0.0015	18.9	2.7	3.8	7.8	0.0	3.5	2	1	1	3	3	3	2	Domain	of	unknown	function	(DUF4198)
Big_1	PF02369.16	gi|345004242|ref|YP_004807095.1|	-	0.0048	16.9	38.6	0.055	13.5	0.9	6.4	5	1	1	6	6	6	3	Bacterial	Ig-like	domain	(group	1)
Cupredoxin_1	PF13473.6	gi|345004242|ref|YP_004807095.1|	-	0.0058	16.7	2.7	2.2	8.4	0.0	4.3	2	2	2	4	4	4	1	Cupredoxin-like	domain
fn3_3	PF14686.6	gi|345004242|ref|YP_004807095.1|	-	0.0066	16.2	2.0	0.08	12.7	0.8	2.8	2	0	0	2	2	2	1	Polysaccharide	lyase	family	4,	domain	II
DUF2606	PF10794.9	gi|345004242|ref|YP_004807095.1|	-	0.043	13.6	2.1	2.2	8.0	0.1	3.2	3	1	0	3	3	3	0	Protein	of	unknown	function	(DUF2606)
SpaA	PF17802.1	gi|345004242|ref|YP_004807095.1|	-	0.07	13.5	0.2	0.07	13.5	0.2	4.1	3	1	1	4	4	4	0	Prealbumin-like	fold	domain
SoxE	PF06525.11	gi|345004242|ref|YP_004807095.1|	-	0.13	11.7	3.1	0.26	10.8	0.7	2.7	2	2	1	3	3	3	0	Sulfocyanin	(SoxE)	domain
FixH	PF05751.11	gi|345004242|ref|YP_004807095.1|	-	0.77	9.8	3.4	11	6.1	0.3	3.4	3	1	1	4	4	4	0	FixH
Glyco_hydro2_C5	PF18565.1	gi|345004242|ref|YP_004807095.1|	-	0.8	9.6	5.3	2.9	7.8	0.2	3.6	3	1	0	3	3	3	0	Glycoside	hydrolase	family	2	C-terminal	domain	5
EMP24_GP25L	PF01105.24	gi|345004242|ref|YP_004807095.1|	-	1	9.3	2.9	8.5	6.3	0.1	2.9	2	2	0	2	2	2	0	emp24/gp25L/p24	family/GOLD
MG4	PF17789.1	gi|345004242|ref|YP_004807095.1|	-	1.5	9.0	10.6	0.34	11.1	0.3	3.7	3	1	1	4	4	4	0	Macroglobulin	domain	MG4
FlgD_ig	PF13860.6	gi|345004242|ref|YP_004807095.1|	-	3.3	7.7	10.7	0.25	11.3	0.5	4.1	4	2	0	4	4	4	0	FlgD	Ig-like	domain
MutS_V	PF00488.21	gi|345004243|ref|YP_004807096.1|	-	2.6e-84	282.0	0.0	6e-84	280.8	0.0	1.6	1	0	0	1	1	1	1	MutS	domain	V
MutS_III	PF05192.18	gi|345004243|ref|YP_004807096.1|	-	5.1e-36	124.7	2.1	1.1e-35	123.7	2.1	1.6	1	0	0	1	1	1	1	MutS	domain	III
MutS_I	PF01624.20	gi|345004243|ref|YP_004807096.1|	-	6.8e-26	90.7	0.0	1.4e-25	89.7	0.0	1.6	1	0	0	1	1	1	1	MutS	domain	I
MutS_II	PF05188.17	gi|345004243|ref|YP_004807096.1|	-	1.8e-22	80.1	0.0	7.6e-22	78.1	0.0	2.2	1	1	0	1	1	1	1	MutS	domain	II
MutS_IV	PF05190.18	gi|345004243|ref|YP_004807096.1|	-	2.8e-22	78.9	0.7	5.6e-22	77.9	0.7	1.5	1	0	0	1	1	1	1	MutS	family	domain	IV
AAA_14	PF13173.6	gi|345004243|ref|YP_004807096.1|	-	0.05	13.6	0.0	0.12	12.4	0.0	1.7	1	0	0	1	1	1	0	AAA	domain
APG6_N	PF17675.1	gi|345004243|ref|YP_004807096.1|	-	0.071	13.6	2.1	0.23	12.0	2.1	1.8	1	0	0	1	1	1	0	Apg6	coiled-coil	region
AAA_29	PF13555.6	gi|345004243|ref|YP_004807096.1|	-	0.17	11.7	0.0	0.35	10.6	0.0	1.5	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
NUDIX	PF00293.28	gi|345004244|ref|YP_004807097.1|	-	1.1e-06	28.7	0.7	1.7e-06	28.1	0.7	1.3	1	1	0	1	1	1	1	NUDIX	domain
NUDIX_2	PF13869.6	gi|345004244|ref|YP_004807097.1|	-	0.00066	19.3	0.0	0.0015	18.2	0.0	1.6	1	1	1	2	2	2	1	Nucleotide	hydrolase
MutL_C	PF08676.11	gi|345004245|ref|YP_004807098.1|	-	4.1e-37	127.2	0.0	6.4e-37	126.6	0.0	1.3	1	0	0	1	1	1	1	MutL	C	terminal	dimerisation	domain
DNA_mis_repair	PF01119.19	gi|345004245|ref|YP_004807098.1|	-	1.2e-33	115.2	0.0	2e-33	114.6	0.0	1.3	1	0	0	1	1	1	1	DNA	mismatch	repair	protein,	C-terminal	domain
HATPase_c_3	PF13589.6	gi|345004245|ref|YP_004807098.1|	-	4.1e-13	49.4	0.1	1.5e-12	47.5	0.1	2.0	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HATPase_c	PF02518.26	gi|345004245|ref|YP_004807098.1|	-	7.9e-06	26.4	0.1	2.3e-05	24.8	0.1	1.8	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
Macoilin	PF09726.9	gi|345004245|ref|YP_004807098.1|	-	4.9	5.6	8.1	6.7	5.1	8.1	1.1	1	0	0	1	1	1	0	Macoilin	family
Imm49	PF15575.6	gi|345004246|ref|YP_004807099.1|	-	6.7e-16	58.7	6.8	9.9e-16	58.2	6.8	1.3	1	0	0	1	1	1	1	Immunity	protein	49
Sigma70_r2	PF04542.14	gi|345004246|ref|YP_004807099.1|	-	0.07	12.9	0.3	0.18	11.6	0.3	1.7	1	0	0	1	1	1	0	Sigma-70	region	2
TPR_1	PF00515.28	gi|345004248|ref|YP_004807101.1|	-	3.4e-22	77.3	4.4	1.8e-08	33.9	0.1	4.4	4	0	0	4	4	4	4	Tetratricopeptide	repeat
TPR_2	PF07719.17	gi|345004248|ref|YP_004807101.1|	-	1.6e-17	62.1	14.8	1.1e-06	28.3	0.4	4.7	5	0	0	5	5	5	4	Tetratricopeptide	repeat
TPR_16	PF13432.6	gi|345004248|ref|YP_004807101.1|	-	5.4e-15	55.8	15.2	2.7e-09	37.5	2.0	3.5	2	2	0	3	3	3	2	Tetratricopeptide	repeat
TPR_8	PF13181.6	gi|345004248|ref|YP_004807101.1|	-	1.1e-14	53.4	3.6	2.1e-05	24.4	0.2	5.0	5	0	0	5	5	5	4	Tetratricopeptide	repeat
TPR_12	PF13424.6	gi|345004248|ref|YP_004807101.1|	-	1e-12	48.1	16.0	1.2e-08	35.1	3.9	3.9	3	1	0	3	3	3	3	Tetratricopeptide	repeat
TPR_11	PF13414.6	gi|345004248|ref|YP_004807101.1|	-	1.6e-11	43.7	3.4	0.0016	18.1	1.1	4.2	2	1	2	4	4	4	3	TPR	repeat
TPR_14	PF13428.6	gi|345004248|ref|YP_004807101.1|	-	4.2e-10	39.6	18.4	0.0031	18.2	0.4	5.1	1	1	4	5	5	5	3	Tetratricopeptide	repeat
TPR_9	PF13371.6	gi|345004248|ref|YP_004807101.1|	-	2.5e-09	37.1	7.1	0.029	14.5	1.6	3.7	1	1	2	3	3	3	3	Tetratricopeptide	repeat
TPR_7	PF13176.6	gi|345004248|ref|YP_004807101.1|	-	1.1e-08	34.5	10.3	3.2e-05	23.6	0.2	4.7	5	0	0	5	5	5	2	Tetratricopeptide	repeat
TPR_17	PF13431.6	gi|345004248|ref|YP_004807101.1|	-	4.5e-08	32.9	1.3	0.00017	21.7	0.0	4.0	4	0	0	4	4	4	1	Tetratricopeptide	repeat
TPR_19	PF14559.6	gi|345004248|ref|YP_004807101.1|	-	4e-06	27.3	10.0	0.0038	17.7	0.0	4.1	1	1	4	5	5	5	3	Tetratricopeptide	repeat
TPR_10	PF13374.6	gi|345004248|ref|YP_004807101.1|	-	0.00014	21.6	14.1	0.053	13.4	0.3	4.5	5	1	0	5	5	5	2	Tetratricopeptide	repeat
TPR_6	PF13174.6	gi|345004248|ref|YP_004807101.1|	-	0.00017	22.0	2.6	7.2	7.5	0.0	4.5	4	0	0	4	4	4	1	Tetratricopeptide	repeat
DUF3856	PF12968.7	gi|345004248|ref|YP_004807101.1|	-	0.0017	18.4	10.9	1.7	8.7	0.3	3.7	1	1	2	3	3	3	3	Domain	of	Unknown	Function	(DUF3856)
ANAPC3	PF12895.7	gi|345004248|ref|YP_004807101.1|	-	0.014	15.6	1.1	0.32	11.2	0.8	2.4	1	1	1	2	2	2	0	Anaphase-promoting	complex,	cyclosome,	subunit	3
TPR_4	PF07721.14	gi|345004248|ref|YP_004807101.1|	-	0.015	15.9	12.6	0.097	13.4	0.4	4.9	5	1	0	5	5	5	0	Tetratricopeptide	repeat
ANAPC5	PF12862.7	gi|345004248|ref|YP_004807101.1|	-	0.023	14.8	2.2	0.59	10.2	0.4	2.7	1	1	2	3	3	3	0	Anaphase-promoting	complex	subunit	5
TPR_5	PF12688.7	gi|345004248|ref|YP_004807101.1|	-	0.088	13.0	0.9	0.37	11.0	0.1	2.2	1	1	1	2	2	2	0	Tetratrico	peptide	repeat
Fis1_TPR_C	PF14853.6	gi|345004248|ref|YP_004807101.1|	-	0.33	11.1	2.1	29	4.8	0.0	3.2	3	0	0	3	3	3	0	Fis1	C-terminal	tetratricopeptide	repeat
DUF424	PF04242.13	gi|345004249|ref|YP_004807102.1|	-	8.7e-24	83.6	0.1	9.8e-24	83.4	0.1	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF424)
Aminotran_5	PF00266.19	gi|345004250|ref|YP_004807103.1|	-	8e-149	495.6	0.0	9.2e-149	495.4	0.0	1.0	1	0	0	1	1	1	1	Aminotransferase	class-V
DegT_DnrJ_EryC1	PF01041.17	gi|345004250|ref|YP_004807103.1|	-	2.5e-09	36.9	0.2	3.9e-09	36.3	0.2	1.3	1	0	0	1	1	1	1	DegT/DnrJ/EryC1/StrS	aminotransferase	family
Beta_elim_lyase	PF01212.21	gi|345004250|ref|YP_004807103.1|	-	3.9e-06	26.4	0.0	4.9e-06	26.0	0.0	1.2	1	0	0	1	1	1	1	Beta-eliminating	lyase
Cys_Met_Meta_PP	PF01053.20	gi|345004250|ref|YP_004807103.1|	-	1.1e-05	24.2	0.0	1.8e-05	23.5	0.0	1.3	1	0	0	1	1	1	1	Cys/Met	metabolism	PLP-dependent	enzyme
Pyridoxal_deC	PF00282.19	gi|345004250|ref|YP_004807103.1|	-	5.4e-05	22.1	0.0	0.00035	19.4	0.0	1.9	2	0	0	2	2	2	1	Pyridoxal-dependent	decarboxylase	conserved	domain
SelA	PF03841.13	gi|345004250|ref|YP_004807103.1|	-	0.00019	20.6	0.0	0.00055	19.0	0.0	1.6	1	1	0	1	1	1	1	L-seryl-tRNA	selenium	transferase
Flavi_NS2B	PF01002.19	gi|345004250|ref|YP_004807103.1|	-	0.089	12.6	0.1	0.23	11.3	0.1	1.6	1	0	0	1	1	1	0	Flavivirus	non-structural	protein	NS2B
NifU_N	PF01592.16	gi|345004251|ref|YP_004807104.1|	-	1.7e-26	92.8	0.0	2e-26	92.6	0.0	1.0	1	0	0	1	1	1	1	NifU-like	N	terminal	domain
SufE	PF02657.15	gi|345004251|ref|YP_004807104.1|	-	0.039	13.8	0.0	0.053	13.4	0.0	1.2	1	0	0	1	1	1	0	Fe-S	metabolism	associated	domain
ArsP_2	PF11449.8	gi|345004252|ref|YP_004807105.1|	-	1.4e-133	445.6	15.4	1.6e-133	445.4	15.4	1.0	1	0	0	1	1	1	1	Putative,	10TM	heavy-metal	exporter
Usp	PF00582.26	gi|345004253|ref|YP_004807106.1|	-	1.3e-36	126.2	1.3	1.5e-36	126.0	1.3	1.0	1	0	0	1	1	1	1	Universal	stress	protein	family
DNA_photolyase	PF00875.18	gi|345004253|ref|YP_004807106.1|	-	0.0022	18.0	0.0	0.0031	17.5	0.0	1.2	1	0	0	1	1	1	1	DNA	photolyase
FR47	PF08445.10	gi|345004253|ref|YP_004807106.1|	-	0.0053	16.7	0.1	0.011	15.7	0.1	1.5	1	0	0	1	1	1	1	FR47-like	protein
CheX	PF13690.6	gi|345004254|ref|YP_004807107.1|	-	0.018	15.2	0.0	1.2	9.4	0.0	2.5	2	0	0	2	2	2	0	Chemotaxis	phosphatase	CheX
HTH_20	PF12840.7	gi|345004255|ref|YP_004807108.1|	-	8.8e-09	35.3	0.0	1.3e-08	34.7	0.0	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_24	PF13412.6	gi|345004255|ref|YP_004807108.1|	-	3.6e-05	23.2	0.0	9.8e-05	21.8	0.0	1.9	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
TrmB	PF01978.19	gi|345004255|ref|YP_004807108.1|	-	0.00015	21.6	0.0	0.00031	20.6	0.0	1.6	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_AsnC-type	PF13404.6	gi|345004255|ref|YP_004807108.1|	-	0.00055	19.7	0.1	0.0051	16.6	0.0	2.4	2	0	0	2	2	2	1	AsnC-type	helix-turn-helix	domain
HTH_IclR	PF09339.10	gi|345004255|ref|YP_004807108.1|	-	0.00088	19.0	0.0	0.0017	18.1	0.0	1.5	1	1	0	1	1	1	1	IclR	helix-turn-helix	domain
HTH_11	PF08279.12	gi|345004255|ref|YP_004807108.1|	-	0.0044	16.9	0.0	0.0091	15.9	0.0	1.6	1	0	0	1	1	1	1	HTH	domain
MarR_2	PF12802.7	gi|345004255|ref|YP_004807108.1|	-	0.038	13.9	0.0	0.059	13.3	0.0	1.3	1	0	0	1	1	1	0	MarR	family
RP-C	PF03428.13	gi|345004255|ref|YP_004807108.1|	-	0.052	13.2	0.1	0.13	11.9	0.1	1.6	1	1	0	1	1	1	0	Replication	protein	C	N-terminal	domain
ATPase	PF06745.13	gi|345004256|ref|YP_004807109.1|	-	1.8e-50	171.4	0.1	2.1e-50	171.2	0.1	1.0	1	0	0	1	1	1	1	KaiC
AAA_25	PF13481.6	gi|345004256|ref|YP_004807109.1|	-	2.5e-07	30.5	0.0	3.4e-07	30.0	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
DUF2075	PF09848.9	gi|345004256|ref|YP_004807109.1|	-	0.0004	19.7	0.0	0.00048	19.5	0.0	1.1	1	0	0	1	1	1	1	Uncharacterized	conserved	protein	(DUF2075)
GvpD	PF07088.11	gi|345004256|ref|YP_004807109.1|	-	0.00057	18.6	0.1	0.00077	18.2	0.1	1.5	1	1	0	1	1	1	1	GvpD	gas	vesicle	protein
Rad51	PF08423.11	gi|345004256|ref|YP_004807109.1|	-	0.00074	18.9	0.1	0.001	18.4	0.1	1.2	1	0	0	1	1	1	1	Rad51
AAA_24	PF13479.6	gi|345004256|ref|YP_004807109.1|	-	0.0055	16.5	0.1	0.0079	15.9	0.1	1.3	1	0	0	1	1	1	1	AAA	domain
DnaB_C	PF03796.15	gi|345004256|ref|YP_004807109.1|	-	0.0069	15.7	0.0	0.0088	15.4	0.0	1.3	1	0	0	1	1	1	1	DnaB-like	helicase	C	terminal	domain
AAA_16	PF13191.6	gi|345004256|ref|YP_004807109.1|	-	0.027	14.9	0.1	0.093	13.1	0.0	1.9	1	1	0	1	1	1	0	AAA	ATPase	domain
T2SSE	PF00437.20	gi|345004256|ref|YP_004807109.1|	-	0.065	12.3	0.1	0.099	11.7	0.1	1.3	1	0	0	1	1	1	0	Type	II/IV	secretion	system	protein
AAA_7	PF12775.7	gi|345004256|ref|YP_004807109.1|	-	0.09	12.3	0.0	0.15	11.6	0.0	1.3	1	0	0	1	1	1	0	P-loop	containing	dynein	motor	region
DUF3764	PF12594.8	gi|345004256|ref|YP_004807109.1|	-	0.14	12.3	0.0	0.24	11.5	0.0	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3764)
DHHA1	PF02272.19	gi|345004257|ref|YP_004807110.1|	-	1.2e-18	67.9	0.8	2.4e-18	66.9	0.8	1.5	1	0	0	1	1	1	1	DHHA1	domain
PhzC-PhzF	PF02567.16	gi|345004258|ref|YP_004807111.1|	-	8.3e-67	225.6	0.0	9.9e-67	225.4	0.0	1.0	1	0	0	1	1	1	1	Phenazine	biosynthesis-like	protein
Pro_racemase	PF05544.11	gi|345004258|ref|YP_004807111.1|	-	0.0004	19.5	0.0	0.00068	18.8	0.0	1.3	1	0	0	1	1	1	1	Proline	racemase
Usp	PF00582.26	gi|345004259|ref|YP_004807112.1|	-	2.4e-21	76.8	0.4	3.1e-21	76.3	0.4	1.1	1	0	0	1	1	1	1	Universal	stress	protein	family
zf-3CxxC_2	PF17180.4	gi|345004260|ref|YP_004807113.1|	-	0.013	16.2	3.6	1.8	9.4	0.1	2.0	1	1	1	2	2	2	0	Zinc-binding	domain
FYVE	PF01363.21	gi|345004260|ref|YP_004807113.1|	-	0.018	15.1	1.3	0.023	14.9	1.3	1.1	1	0	0	1	1	1	0	FYVE	zinc	finger
DUF1451	PF07295.11	gi|345004260|ref|YP_004807113.1|	-	0.032	14.2	0.7	0.043	13.9	0.7	1.1	1	0	0	1	1	1	0	Zinc-ribbon	containing	domain
HypA	PF01155.19	gi|345004260|ref|YP_004807113.1|	-	0.041	13.9	0.6	0.048	13.7	0.6	1.2	1	0	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
XPA_N	PF01286.18	gi|345004260|ref|YP_004807113.1|	-	0.054	13.6	3.1	3.9	7.6	0.2	2.2	2	0	0	2	2	2	0	XPA	protein	N-terminal
UPF0547	PF10571.9	gi|345004260|ref|YP_004807113.1|	-	0.055	13.5	2.3	1.2	9.3	0.2	2.1	2	0	0	2	2	2	0	Uncharacterised	protein	family	UPF0547
Jiv90	PF14901.6	gi|345004260|ref|YP_004807113.1|	-	0.065	13.4	1.3	0.075	13.2	1.3	1.1	1	0	0	1	1	1	0	Cleavage	inducing	molecular	chaperone
zf-C2H2_6	PF13912.6	gi|345004260|ref|YP_004807113.1|	-	0.07	13.2	2.4	2.6	8.1	0.2	2.2	2	0	0	2	2	2	0	C2H2-type	zinc	finger
DZR	PF12773.7	gi|345004260|ref|YP_004807113.1|	-	0.089	12.8	2.9	0.13	12.3	2.9	1.3	1	1	0	1	1	1	0	Double	zinc	ribbon
zf_UBZ	PF18439.1	gi|345004260|ref|YP_004807113.1|	-	0.33	10.6	3.5	2.3	7.9	0.1	2.1	2	0	0	2	2	2	0	Ubiquitin-Binding	Zinc	Finger
MFS_1	PF07690.16	gi|345004261|ref|YP_004807114.1|	-	4.7e-31	108.0	80.1	9.2e-28	97.2	50.8	2.3	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
MFS_1_like	PF12832.7	gi|345004261|ref|YP_004807114.1|	-	4.2e-06	25.9	21.3	4.8e-05	22.4	8.8	2.1	2	0	0	2	2	2	2	MFS_1	like	family
NDUF_B12	PF08122.12	gi|345004261|ref|YP_004807114.1|	-	0.58	10.3	4.4	28	4.9	0.5	3.6	2	0	0	2	2	2	0	NADH-ubiquinone	oxidoreductase	B12	subunit	family
DHQS	PF01959.16	gi|345004262|ref|YP_004807115.1|	-	5.9e-137	456.3	4.5	6.6e-137	456.1	4.5	1.0	1	0	0	1	1	1	1	3-dehydroquinate	synthase	II
Hint	PF01079.20	gi|345004262|ref|YP_004807115.1|	-	0.00024	20.7	0.5	0.012	15.1	0.1	2.3	1	1	1	2	2	2	1	Hint	module
Hint_2	PF13403.6	gi|345004262|ref|YP_004807115.1|	-	0.051	13.9	1.1	12	6.2	0.1	2.7	2	0	0	2	2	2	0	Hint	domain
OapA	PF04225.12	gi|345004262|ref|YP_004807115.1|	-	0.066	13.3	0.0	6.4	7.0	0.0	2.5	2	0	0	2	2	2	0	Opacity-associated	protein	A	LysM-like	domain
QRPTase_C	PF01729.19	gi|345004262|ref|YP_004807115.1|	-	0.077	12.8	1.5	0.85	9.4	0.4	2.7	2	1	0	2	2	2	0	Quinolinate	phosphoribosyl	transferase,	C-terminal	domain
DUF4191	PF13829.6	gi|345004263|ref|YP_004807116.1|	-	0.029	13.7	0.4	0.029	13.7	0.4	1.0	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4191)
FecCD	PF01032.18	gi|345004263|ref|YP_004807116.1|	-	0.19	10.7	3.0	0.2	10.6	3.0	1.0	1	0	0	1	1	1	0	FecCD	transport	family
PHO4	PF01384.20	gi|345004264|ref|YP_004807117.1|	-	1.9e-47	162.0	31.2	1.9e-47	162.0	31.2	1.8	1	1	1	2	2	2	1	Phosphate	transporter	family
DUF4191	PF13829.6	gi|345004265|ref|YP_004807118.1|	-	0.099	12.0	0.0	0.1	11.9	0.0	1.0	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4191)
Cupin_2	PF07883.11	gi|345004266|ref|YP_004807119.1|	-	1.1e-12	47.4	0.4	2.3e-12	46.4	0.4	1.6	1	0	0	1	1	1	1	Cupin	domain
AraC_binding	PF02311.19	gi|345004266|ref|YP_004807119.1|	-	0.0014	18.5	0.1	0.0018	18.1	0.1	1.3	1	0	0	1	1	1	1	AraC-like	ligand	binding	domain
Zn-ribbon_8	PF09723.10	gi|345004266|ref|YP_004807119.1|	-	0.0057	16.7	1.8	0.0098	16.0	1.8	1.4	1	0	0	1	1	1	1	Zinc	ribbon	domain
HypA	PF01155.19	gi|345004266|ref|YP_004807119.1|	-	0.01	15.8	0.0	0.013	15.5	0.0	1.2	1	0	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
Nudix_N_2	PF14803.6	gi|345004266|ref|YP_004807119.1|	-	0.014	15.3	4.1	0.055	13.4	4.1	2.0	1	1	1	2	2	2	0	Nudix	N-terminal
RecR	PF02132.15	gi|345004266|ref|YP_004807119.1|	-	0.03	13.9	1.9	1.7	8.2	0.2	2.4	2	0	0	2	2	2	0	RecR	protein
DZR	PF12773.7	gi|345004266|ref|YP_004807119.1|	-	0.036	14.1	0.8	0.067	13.2	0.8	1.4	1	0	0	1	1	1	0	Double	zinc	ribbon
Lar_restr_allev	PF14354.6	gi|345004266|ref|YP_004807119.1|	-	0.072	13.5	0.8	0.13	12.7	0.8	1.4	1	0	0	1	1	1	0	Restriction	alleviation	protein	Lar
Rubredoxin_2	PF18073.1	gi|345004266|ref|YP_004807119.1|	-	0.48	10.2	5.5	0.62	9.8	0.7	2.2	2	0	0	2	2	2	0	Rubredoxin	metal	binding	domain
zf-dskA_traR	PF01258.17	gi|345004266|ref|YP_004807119.1|	-	1.2	9.1	5.5	0.84	9.6	0.4	2.6	3	0	0	3	3	3	0	Prokaryotic	dksA/traR	C4-type	zinc	finger
Oxidored_molyb	PF00174.19	gi|345004267|ref|YP_004807120.1|	-	5.7e-28	97.7	0.0	1e-27	96.8	0.0	1.4	1	0	0	1	1	1	1	Oxidoreductase	molybdopterin	binding	domain
Ni_hydr_CYTB	PF01292.20	gi|345004267|ref|YP_004807120.1|	-	0.025	14.2	13.1	0.93	9.1	7.0	2.4	1	1	1	2	2	2	0	Prokaryotic	cytochrome	b561
DUF4395	PF14340.6	gi|345004267|ref|YP_004807120.1|	-	0.56	10.6	7.0	1.1	9.6	7.0	1.5	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4395)
CrgA	PF06781.12	gi|345004267|ref|YP_004807120.1|	-	10	6.3	8.8	0.14	12.2	1.1	1.9	2	0	0	2	2	2	0	Cell	division	protein	CrgA
adh_short_C2	PF13561.6	gi|345004268|ref|YP_004807121.1|	-	8e-60	202.3	3.1	1e-59	202.0	3.1	1.0	1	0	0	1	1	1	1	Enoyl-(Acyl	carrier	protein)	reductase
adh_short	PF00106.25	gi|345004268|ref|YP_004807121.1|	-	8.6e-56	188.5	0.5	1e-55	188.3	0.5	1.0	1	0	0	1	1	1	1	short	chain	dehydrogenase
KR	PF08659.10	gi|345004268|ref|YP_004807121.1|	-	3.8e-13	49.7	0.2	5.1e-13	49.3	0.2	1.2	1	0	0	1	1	1	1	KR	domain
Epimerase	PF01370.21	gi|345004268|ref|YP_004807121.1|	-	8.1e-06	25.5	0.7	1.3e-05	24.8	0.7	1.4	1	1	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
FeoA	PF04023.14	gi|345004268|ref|YP_004807121.1|	-	0.025	14.8	0.6	0.67	10.3	0.1	2.6	2	0	0	2	2	2	0	FeoA	domain
HMGL-like	PF00682.19	gi|345004268|ref|YP_004807121.1|	-	0.029	13.9	0.1	0.039	13.5	0.1	1.1	1	0	0	1	1	1	0	HMGL-like
Radical_SAM	PF04055.21	gi|345004268|ref|YP_004807121.1|	-	0.033	14.6	0.1	0.3	11.4	0.0	2.2	2	1	0	2	2	2	0	Radical	SAM	superfamily
Ribosomal_S13	PF00416.22	gi|345004268|ref|YP_004807121.1|	-	0.16	12.3	0.3	1.1	9.6	0.0	2.3	2	1	1	3	3	3	0	Ribosomal	protein	S13/S18
Aminotran_1_2	PF00155.21	gi|345004269|ref|YP_004807122.1|	-	3.1e-65	220.7	0.0	3.6e-65	220.5	0.0	1.0	1	0	0	1	1	1	1	Aminotransferase	class	I	and	II
Aminotran_5	PF00266.19	gi|345004269|ref|YP_004807122.1|	-	2.4e-09	36.6	0.0	3.7e-07	29.4	0.0	2.1	1	1	0	1	1	1	1	Aminotransferase	class-V
Cys_Met_Meta_PP	PF01053.20	gi|345004269|ref|YP_004807122.1|	-	5.9e-06	25.1	0.0	1.1e-05	24.2	0.0	1.3	1	0	0	1	1	1	1	Cys/Met	metabolism	PLP-dependent	enzyme
Beta_elim_lyase	PF01212.21	gi|345004269|ref|YP_004807122.1|	-	1.6e-05	24.3	0.0	3.3e-05	23.3	0.0	1.4	1	0	0	1	1	1	1	Beta-eliminating	lyase
Aminotran_MocR	PF12897.7	gi|345004269|ref|YP_004807122.1|	-	4.8e-05	22.3	0.0	5.6e-05	22.1	0.0	1.2	1	0	0	1	1	1	1	Alanine-glyoxylate	amino-transferase
Aminotran_3	PF00202.21	gi|345004269|ref|YP_004807122.1|	-	0.023	13.4	0.0	0.025	13.2	0.0	1.3	1	0	0	1	1	1	0	Aminotransferase	class-III
GST_N_2	PF13409.6	gi|345004270|ref|YP_004807123.1|	-	6.8e-22	77.6	0.0	2.2e-21	75.9	0.0	1.8	2	0	0	2	2	2	1	Glutathione	S-transferase,	N-terminal	domain
GST_C_2	PF13410.6	gi|345004270|ref|YP_004807123.1|	-	6.9e-12	45.2	0.4	1.9e-11	43.8	0.4	1.7	1	0	0	1	1	1	1	Glutathione	S-transferase,	C-terminal	domain
GST_C	PF00043.25	gi|345004270|ref|YP_004807123.1|	-	1e-07	32.0	0.0	1.9e-07	31.2	0.0	1.4	1	0	0	1	1	1	1	Glutathione	S-transferase,	C-terminal	domain
GST_N_3	PF13417.6	gi|345004270|ref|YP_004807123.1|	-	1.7e-06	28.3	0.0	2.2e-05	24.7	0.0	2.3	1	1	0	1	1	1	1	Glutathione	S-transferase,	N-terminal	domain
GST_C_3	PF14497.6	gi|345004270|ref|YP_004807123.1|	-	0.00011	22.3	0.0	0.0002	21.5	0.0	1.3	1	0	0	1	1	1	1	Glutathione	S-transferase,	C-terminal	domain
GST_C_6	PF17171.4	gi|345004270|ref|YP_004807123.1|	-	0.00018	21.3	0.1	0.00065	19.5	0.1	1.8	2	0	0	2	2	2	1	Glutathione	S-transferase,	C-terminal	domain
ThiP_synth	PF10120.9	gi|345004271|ref|YP_004807124.1|	-	2.6e-50	170.2	0.2	3.7e-50	169.8	0.2	1.2	1	0	0	1	1	1	1	Thiamine-phosphate	synthase
HTH_3	PF01381.22	gi|345004271|ref|YP_004807124.1|	-	3.7e-07	30.1	0.0	7.7e-07	29.1	0.0	1.5	1	0	0	1	1	1	1	Helix-turn-helix
HTH_31	PF13560.6	gi|345004271|ref|YP_004807124.1|	-	1.9e-05	24.9	0.3	1.9e-05	24.9	0.3	2.6	3	1	0	3	3	3	1	Helix-turn-helix	domain
HTH_37	PF13744.6	gi|345004271|ref|YP_004807124.1|	-	0.00027	20.8	0.0	0.00051	19.9	0.0	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_23	PF13384.6	gi|345004271|ref|YP_004807124.1|	-	0.0016	18.2	0.0	0.0058	16.4	0.0	2.0	1	0	0	1	1	1	1	Homeodomain-like	domain
MarR_2	PF12802.7	gi|345004271|ref|YP_004807124.1|	-	0.0026	17.6	0.1	0.02	14.8	0.1	2.4	2	0	0	2	2	2	1	MarR	family
Sigma70_r4	PF04545.16	gi|345004271|ref|YP_004807124.1|	-	0.0031	17.0	0.0	0.0073	15.8	0.0	1.6	1	0	0	1	1	1	1	Sigma-70,	region	4
HTH_24	PF13412.6	gi|345004271|ref|YP_004807124.1|	-	0.0035	16.8	0.0	0.0096	15.5	0.0	1.8	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_19	PF12844.7	gi|345004271|ref|YP_004807124.1|	-	0.0078	16.2	0.0	0.014	15.4	0.0	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_26	PF13443.6	gi|345004271|ref|YP_004807124.1|	-	0.0086	16.5	0.0	0.016	15.6	0.0	1.4	1	0	0	1	1	1	1	Cro/C1-type	HTH	DNA-binding	domain
HTH_38	PF13936.6	gi|345004271|ref|YP_004807124.1|	-	0.011	15.5	0.0	0.036	13.8	0.0	1.8	2	0	0	2	2	2	0	Helix-turn-helix	domain
YdaS_antitoxin	PF15943.5	gi|345004271|ref|YP_004807124.1|	-	0.019	14.9	0.0	0.046	13.6	0.0	1.6	1	0	0	1	1	1	0	Putative	antitoxin	of	bacterial	toxin-antitoxin	system,	YdaS/YdaT
P22_Cro	PF14549.6	gi|345004271|ref|YP_004807124.1|	-	0.022	14.6	0.3	0.067	13.1	0.1	1.8	2	0	0	2	2	2	0	DNA-binding	transcriptional	regulator	Cro
RepB	PF07506.11	gi|345004271|ref|YP_004807124.1|	-	0.05	13.7	0.1	0.084	13.0	0.1	1.3	1	0	0	1	1	1	0	RepB	plasmid	partitioning	protein
HTH_Tnp_ISL3	PF13542.6	gi|345004271|ref|YP_004807124.1|	-	0.06	12.8	0.1	0.15	11.5	0.1	1.7	1	0	0	1	1	1	0	Helix-turn-helix	domain	of	transposase	family	ISL3
HTH_29	PF13551.6	gi|345004271|ref|YP_004807124.1|	-	0.062	13.3	0.1	6.9	6.8	0.1	2.8	2	0	0	2	2	2	0	Winged	helix-turn	helix
LacI	PF00356.21	gi|345004271|ref|YP_004807124.1|	-	0.07	12.9	0.1	13	5.7	0.1	2.7	2	0	0	2	2	2	0	Bacterial	regulatory	proteins,	lacI	family
HNF-1_N	PF04814.13	gi|345004271|ref|YP_004807124.1|	-	0.24	12.0	0.0	0.44	11.1	0.0	1.3	1	0	0	1	1	1	0	Hepatocyte	nuclear	factor	1	(HNF-1),	N	terminus
HTH_20	PF12840.7	gi|345004271|ref|YP_004807124.1|	-	0.26	11.4	3.1	3.6	7.7	0.1	3.6	3	1	0	3	3	3	0	Helix-turn-helix	domain
dUTPase	PF00692.19	gi|345004272|ref|YP_004807125.1|	-	4.8e-16	58.6	0.0	6.7e-16	58.2	0.0	1.1	1	0	0	1	1	1	1	dUTPase
DCD	PF06559.11	gi|345004272|ref|YP_004807125.1|	-	1e-15	57.5	0.0	6.4e-14	51.5	0.0	2.0	1	1	0	1	1	1	1	2'-deoxycytidine	5'-triphosphate	deaminase	(DCD)
Stealth_CR1	PF17101.5	gi|345004272|ref|YP_004807125.1|	-	0.09	12.5	0.0	0.17	11.6	0.0	1.5	1	0	0	1	1	1	0	Stealth	protein	CR1,	conserved	region	1
bPH_2	PF03703.14	gi|345004273|ref|YP_004807126.1|	-	1.1e-12	47.9	0.2	2e-12	47.1	0.2	1.3	1	0	0	1	1	1	1	Bacterial	PH	domain
SPC25	PF06703.11	gi|345004273|ref|YP_004807126.1|	-	0.1	12.4	0.3	0.15	11.8	0.3	1.3	1	0	0	1	1	1	0	Microsomal	signal	peptidase	25	kDa	subunit	(SPC25)
DUF373	PF04123.13	gi|345004273|ref|YP_004807126.1|	-	0.44	9.9	2.6	0.22	10.9	0.7	1.4	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF373)
CooC_C	PF15976.5	gi|345004274|ref|YP_004807127.1|	-	2.2e-05	24.4	0.0	8.2e-05	22.6	0.0	2.0	2	0	0	2	2	2	1	CS1-pili	formation	C-terminal
DUF779	PF05610.11	gi|345004274|ref|YP_004807127.1|	-	0.052	13.8	0.0	0.23	11.7	0.0	2.0	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF779)
CarbopepD_reg_2	PF13715.6	gi|345004274|ref|YP_004807127.1|	-	0.15	12.1	0.0	0.15	12.1	0.0	2.8	4	0	0	4	4	4	0	CarboxypepD_reg-like	domain
TAT_signal	PF10518.9	gi|345004274|ref|YP_004807127.1|	-	1.1	9.2	11.2	0.34	10.8	6.4	2.5	1	1	1	2	2	2	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
PTH2	PF01981.16	gi|345004276|ref|YP_004807129.1|	-	3.6e-41	140.1	0.0	3.9e-41	140.0	0.0	1.0	1	0	0	1	1	1	1	Peptidyl-tRNA	hydrolase	PTH2
DUF2000	PF09391.10	gi|345004276|ref|YP_004807129.1|	-	0.065	13.1	0.0	2.2	8.2	0.0	2.1	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF2000)
TruD	PF01142.18	gi|345004277|ref|YP_004807130.1|	-	1.1e-161	538.3	0.0	1.3e-161	538.1	0.0	1.0	1	0	0	1	1	1	1	tRNA	pseudouridine	synthase	D	(TruD)
DUF2103	PF09876.9	gi|345004278|ref|YP_004807131.1|	-	2.8e-39	133.0	0.3	4.2e-39	132.5	0.3	1.2	1	0	0	1	1	1	1	Predicted	metal-binding	protein	(DUF2103)
Ribosomal_L37ae	PF01780.19	gi|345004279|ref|YP_004807132.1|	-	1.1e-22	80.0	0.5	1.3e-22	79.7	0.5	1.1	1	0	0	1	1	1	1	Ribosomal	L37ae	protein	family
DUF4761	PF15958.5	gi|345004279|ref|YP_004807132.1|	-	0.054	13.6	0.1	0.09	12.9	0.0	1.4	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4761)
DNA_RNApol_7kD	PF03604.13	gi|345004280|ref|YP_004807133.1|	-	1.7e-10	40.4	6.3	2.1e-10	40.1	6.3	1.1	1	0	0	1	1	1	1	DNA	directed	RNA	polymerase,	7	kDa	subunit
zf-ribbon_3	PF13248.6	gi|345004280|ref|YP_004807133.1|	-	8.4e-05	21.8	0.3	0.0067	15.8	0.1	2.1	2	0	0	2	2	2	1	zinc-ribbon	domain
HypA	PF01155.19	gi|345004280|ref|YP_004807133.1|	-	0.0006	19.8	0.4	0.0006	19.8	0.4	1.1	1	0	0	1	1	1	1	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
zf_UBZ	PF18439.1	gi|345004280|ref|YP_004807133.1|	-	0.0012	18.4	1.4	0.33	10.6	0.3	2.1	1	1	1	2	2	2	2	Ubiquitin-Binding	Zinc	Finger
A2L_zn_ribbon	PF08792.10	gi|345004280|ref|YP_004807133.1|	-	0.0032	17.1	1.0	0.28	11.0	2.0	2.0	1	1	1	2	2	2	2	A2L	zinc	ribbon	domain
Zn_Tnp_IS1595	PF12760.7	gi|345004280|ref|YP_004807133.1|	-	0.0037	17.2	4.2	0.1	12.6	0.1	2.1	2	0	0	2	2	2	1	Transposase	zinc-ribbon	domain
zf-CHCC	PF10276.9	gi|345004280|ref|YP_004807133.1|	-	0.0051	16.8	0.4	0.0092	16.0	0.4	1.4	1	0	0	1	1	1	1	Zinc-finger	domain
RNHCP	PF12647.7	gi|345004280|ref|YP_004807133.1|	-	0.007	16.3	0.2	0.0079	16.1	0.2	1.1	1	0	0	1	1	1	1	RNHCP	domain
DZR	PF12773.7	gi|345004280|ref|YP_004807133.1|	-	0.01	15.8	0.9	0.022	14.8	0.9	1.6	1	1	0	1	1	1	0	Double	zinc	ribbon
zinc_ribbon_2	PF13240.6	gi|345004280|ref|YP_004807133.1|	-	0.013	15.2	2.1	0.17	11.6	0.3	2.1	2	0	0	2	2	2	0	zinc-ribbon	domain
Anti-TRAP	PF15777.5	gi|345004280|ref|YP_004807133.1|	-	0.015	15.3	0.2	0.018	15.0	0.2	1.2	1	0	0	1	1	1	0	Tryptophan	RNA-binding	attenuator	protein	inhibitory	protein
Lar_restr_allev	PF14354.6	gi|345004280|ref|YP_004807133.1|	-	0.018	15.4	0.6	0.14	12.6	0.1	1.9	1	1	1	2	2	2	0	Restriction	alleviation	protein	Lar
Sgf11	PF08209.11	gi|345004280|ref|YP_004807133.1|	-	0.027	14.0	1.9	1.4	8.5	0.2	2.1	2	0	0	2	2	2	0	Sgf11	(transcriptional	regulation	protein)
zinc-ribbons_6	PF07191.12	gi|345004280|ref|YP_004807133.1|	-	0.032	14.2	0.2	0.039	13.9	0.2	1.2	1	0	0	1	1	1	0	zinc-ribbons
YacG	PF03884.14	gi|345004280|ref|YP_004807133.1|	-	0.037	13.8	0.1	0.96	9.2	0.0	2.0	2	0	0	2	2	2	0	DNA	gyrase	inhibitor	YacG
Cys_rich_CPXG	PF14255.6	gi|345004280|ref|YP_004807133.1|	-	0.042	13.8	0.7	0.13	12.1	0.1	1.9	2	0	0	2	2	2	0	Cysteine-rich	CPXCG
TF_Zn_Ribbon	PF08271.12	gi|345004280|ref|YP_004807133.1|	-	0.058	12.9	3.8	0.15	11.6	3.9	1.6	1	1	1	2	2	2	0	TFIIB	zinc-binding
zf-Di19	PF05605.12	gi|345004280|ref|YP_004807133.1|	-	0.062	13.6	0.3	0.79	10.1	0.0	2.0	2	0	0	2	2	2	0	Drought	induced	19	protein	(Di19),	zinc-binding
DUF951	PF06107.11	gi|345004280|ref|YP_004807133.1|	-	0.083	12.8	1.1	5.9	6.9	0.1	2.1	1	1	1	2	2	2	0	Bacterial	protein	of	unknown	function	(DUF951)
OrfB_Zn_ribbon	PF07282.11	gi|345004280|ref|YP_004807133.1|	-	0.14	12.1	3.9	0.2	11.6	2.4	1.9	1	1	1	2	2	2	0	Putative	transposase	DNA-binding	domain
Thioredoxin_4	PF13462.6	gi|345004280|ref|YP_004807133.1|	-	0.15	12.2	1.7	0.19	11.8	0.0	1.8	1	1	1	2	2	2	0	Thioredoxin
Zn-ribbon_8	PF09723.10	gi|345004280|ref|YP_004807133.1|	-	0.17	12.0	3.9	0.44	10.7	3.9	1.7	1	1	0	1	1	1	0	Zinc	ribbon	domain
CpXC	PF14353.6	gi|345004280|ref|YP_004807133.1|	-	0.19	11.8	1.3	0.62	10.1	0.3	1.8	1	1	1	2	2	2	0	CpXC	protein
zf-IS66	PF13005.7	gi|345004280|ref|YP_004807133.1|	-	0.36	11.2	0.2	0.36	11.2	0.2	2.1	2	0	0	2	2	2	0	zinc-finger	binding	domain	of	transposase	IS66
zinc_ribbon_4	PF13717.6	gi|345004280|ref|YP_004807133.1|	-	0.91	9.5	7.2	15	5.6	5.5	2.4	2	1	0	2	2	2	0	zinc-ribbon	domain
Pcc1	PF09341.10	gi|345004281|ref|YP_004807134.1|	-	8e-12	45.1	2.2	9.8e-12	44.8	2.2	1.0	1	0	0	1	1	1	1	Transcription	factor	Pcc1
Pro_dh	PF01619.18	gi|345004282|ref|YP_004807135.1|	-	5.6e-25	88.5	0.0	1.2e-24	87.4	0.0	1.5	1	1	0	1	1	1	1	Proline	dehydrogenase
DUF502	PF04367.13	gi|345004283|ref|YP_004807136.1|	-	5.5e-18	64.8	1.0	7.1e-18	64.5	0.0	1.6	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF502)
Chromate_transp	PF02417.15	gi|345004283|ref|YP_004807136.1|	-	0.13	12.4	3.1	0.19	11.9	3.1	1.2	1	0	0	1	1	1	0	Chromate	transporter
GBV-C_env	PF12786.7	gi|345004283|ref|YP_004807136.1|	-	0.28	9.8	0.5	0.36	9.4	0.5	1.1	1	0	0	1	1	1	0	GB	virus	C	genotype	envelope
Abhydrolase_9_N	PF15420.6	gi|345004283|ref|YP_004807136.1|	-	1.6	8.7	9.8	3.3	7.6	9.8	1.5	1	1	0	1	1	1	0	Alpha/beta-hydrolase	family	N-terminus
SNARE_assoc	PF09335.11	gi|345004284|ref|YP_004807137.1|	-	3.6e-10	40.4	1.0	3.6e-10	40.4	1.0	1.9	1	1	1	2	2	2	1	SNARE	associated	Golgi	protein
tRNA-synt_1g	PF09334.11	gi|345004285|ref|YP_004807138.1|	-	2.6e-140	467.6	0.0	1.2e-139	465.4	0.0	1.8	1	1	0	1	1	1	1	tRNA	synthetases	class	I	(M)
tRNA_bind	PF01588.20	gi|345004285|ref|YP_004807138.1|	-	5e-23	81.0	0.1	9e-23	80.2	0.1	1.4	1	0	0	1	1	1	1	Putative	tRNA	binding	domain
tRNA-synt_1	PF00133.22	gi|345004285|ref|YP_004807138.1|	-	2e-16	59.4	1.0	3.7e-10	38.7	0.1	3.7	3	1	0	3	3	3	2	tRNA	synthetases	class	I	(I,	L,	M	and	V)
tRNA-synt_1e	PF01406.19	gi|345004285|ref|YP_004807138.1|	-	1.5e-11	44.2	0.0	3.9e-07	29.7	0.0	2.3	2	0	0	2	2	2	2	tRNA	synthetases	class	I	(C)	catalytic	domain
Anticodon_1	PF08264.13	gi|345004285|ref|YP_004807138.1|	-	2.9e-08	33.8	0.0	5.1e-08	33.0	0.0	1.3	1	0	0	1	1	1	1	Anticodon-binding	domain	of	tRNA
tRNA-synt_1f	PF01921.18	gi|345004285|ref|YP_004807138.1|	-	0.048	12.6	0.0	0.14	11.1	0.0	1.7	2	0	0	2	2	2	0	tRNA	synthetases	class	I	(K)
DUF773	PF05600.12	gi|345004285|ref|YP_004807138.1|	-	0.99	8.1	2.2	1.6	7.4	2.2	1.3	1	0	0	1	1	1	0	CDK5	regulatory	subunit-associated	protein	3
HSCB_C	PF07743.13	gi|345004285|ref|YP_004807138.1|	-	2.7	8.6	4.8	10	6.7	0.0	3.2	3	0	0	3	3	3	0	HSCB	C-terminal	oligomerisation	domain
Fer4_15	PF13459.6	gi|345004286|ref|YP_004807139.1|	-	5e-21	75.2	3.8	6e-21	75.0	3.8	1.1	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
Fer4_13	PF13370.6	gi|345004286|ref|YP_004807139.1|	-	1.3e-09	38.4	1.2	3.1e-09	37.2	1.2	1.6	1	1	0	1	1	1	1	4Fe-4S	single	cluster	domain	of	Ferredoxin	I
Fer4	PF00037.27	gi|345004286|ref|YP_004807139.1|	-	0.031	14.1	2.0	0.67	9.9	0.2	2.5	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_6	PF12837.7	gi|345004286|ref|YP_004807139.1|	-	0.067	13.3	1.6	2.7	8.2	0.1	2.4	2	0	0	2	2	2	0	4Fe-4S	binding	domain
ERCC4	PF02732.15	gi|345004287|ref|YP_004807140.1|	-	1.5e-23	83.8	0.0	3.3e-23	82.6	0.0	1.6	1	0	0	1	1	1	1	ERCC4	domain
Helicase_C	PF00271.31	gi|345004287|ref|YP_004807140.1|	-	1.9e-20	73.2	0.0	9.1e-20	71.1	0.0	2.0	2	0	0	2	2	2	1	Helicase	conserved	C-terminal	domain
DEAD	PF00270.29	gi|345004287|ref|YP_004807140.1|	-	7.7e-16	58.3	0.0	1.8e-15	57.1	0.0	1.6	1	0	0	1	1	1	1	DEAD/DEAH	box	helicase
ResIII	PF04851.15	gi|345004287|ref|YP_004807140.1|	-	8.6e-12	45.4	0.0	1.9e-11	44.3	0.0	1.5	1	0	0	1	1	1	1	Type	III	restriction	enzyme,	res	subunit
HHH_5	PF14520.6	gi|345004287|ref|YP_004807140.1|	-	7.2e-11	42.5	0.5	8.4e-10	39.1	0.0	2.8	2	0	0	2	2	2	1	Helix-hairpin-helix	domain
HHH_2	PF12826.7	gi|345004287|ref|YP_004807140.1|	-	5.3e-09	36.1	0.1	2.2e-08	34.1	0.0	2.1	2	0	0	2	2	2	1	Helix-hairpin-helix	motif
HHH	PF00633.23	gi|345004287|ref|YP_004807140.1|	-	9.5e-08	31.5	4.6	9e-06	25.3	0.0	3.8	4	0	0	4	4	4	2	Helix-hairpin-helix	motif
5_3_exonuc	PF01367.20	gi|345004287|ref|YP_004807140.1|	-	0.0018	18.9	0.0	0.1	13.2	0.0	2.9	1	1	1	2	2	2	1	5'-3'	exonuclease,	C-terminal	SAM	fold
Usp	PF00582.26	gi|345004288|ref|YP_004807141.1|	-	1.4e-19	71.0	5.2	4.8e-19	69.3	5.2	1.7	1	1	0	1	1	1	1	Universal	stress	protein	family
ETF	PF01012.21	gi|345004288|ref|YP_004807141.1|	-	0.015	15.2	3.2	0.089	12.7	0.4	2.0	1	1	1	2	2	2	0	Electron	transfer	flavoprotein	domain
Auto_anti-p27	PF06677.12	gi|345004289|ref|YP_004807142.1|	-	7.6e-14	51.6	0.4	1.1e-13	51.1	0.4	1.2	1	0	0	1	1	1	1	Sjogren's	syndrome/scleroderma	autoantigen	1	(Autoantigen	p27)
FYVE_2	PF02318.16	gi|345004289|ref|YP_004807142.1|	-	0.02	15.1	1.2	0.036	14.3	1.2	1.4	1	0	0	1	1	1	0	FYVE-type	zinc	finger
DZR	PF12773.7	gi|345004289|ref|YP_004807142.1|	-	0.035	14.1	2.2	0.07	13.2	2.2	1.5	1	0	0	1	1	1	0	Double	zinc	ribbon
NifU	PF01106.17	gi|345004290|ref|YP_004807143.1|	-	1.7e-14	53.7	0.3	3.5e-14	52.7	0.2	1.5	1	1	1	2	2	2	1	NifU-like	domain
DNA_pol3_a_NII	PF11490.8	gi|345004291|ref|YP_004807144.1|	-	0.075	12.9	0.0	0.2	11.5	0.0	1.6	1	1	1	2	2	2	0	DNA	polymerase	III	polC-type	N-terminus	II
Lar_N	PF09861.9	gi|345004293|ref|YP_004807146.1|	-	0.00019	20.7	0.0	0.0003	20.0	0.0	1.2	1	0	0	1	1	1	1	Lactate	racemase	N-terminal	domain
DUF362	PF04015.12	gi|345004293|ref|YP_004807146.1|	-	0.088	13.0	0.0	0.15	12.3	0.0	1.5	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF362)
Asparaginase_II	PF06089.12	gi|345004293|ref|YP_004807146.1|	-	0.14	11.1	0.0	0.22	10.5	0.0	1.2	1	0	0	1	1	1	0	L-asparaginase	II
MR_MLE_C	PF13378.6	gi|345004294|ref|YP_004807147.1|	-	3.7e-64	216.3	0.3	4.8e-64	215.9	0.3	1.1	1	0	0	1	1	1	1	Enolase	C-terminal	domain-like
MR_MLE_N	PF02746.16	gi|345004294|ref|YP_004807147.1|	-	3.9e-20	72.2	0.0	6.5e-20	71.5	0.0	1.4	1	0	0	1	1	1	1	Mandelate	racemase	/	muconate	lactonizing	enzyme,	N-terminal	domain
Enolase_N	PF03952.16	gi|345004294|ref|YP_004807147.1|	-	0.0046	17.1	0.0	0.012	15.8	0.0	1.7	2	0	0	2	2	2	1	Enolase,	N-terminal	domain
MR_MLE_C	PF13378.6	gi|345004295|ref|YP_004807148.1|	-	1.6e-58	197.9	0.6	2.2e-58	197.4	0.6	1.2	1	0	0	1	1	1	1	Enolase	C-terminal	domain-like
MR_MLE_N	PF02746.16	gi|345004295|ref|YP_004807148.1|	-	6.3e-15	55.4	0.1	1.4e-14	54.3	0.1	1.6	1	0	0	1	1	1	1	Mandelate	racemase	/	muconate	lactonizing	enzyme,	N-terminal	domain
Tim17	PF02466.19	gi|345004295|ref|YP_004807148.1|	-	0.083	13.3	0.1	0.15	12.4	0.1	1.4	1	0	0	1	1	1	0	Tim17/Tim22/Tim23/Pmp24	family
DUF4015	PF13200.6	gi|345004295|ref|YP_004807148.1|	-	0.088	11.8	0.2	0.14	11.2	0.2	1.3	1	0	0	1	1	1	0	Putative	glycosyl	hydrolase	domain
Helicase_C_2	PF13307.6	gi|345004296|ref|YP_004807149.1|	-	4.4e-21	75.8	0.0	7e-21	75.1	0.0	1.3	1	0	0	1	1	1	1	Helicase	C-terminal	domain
AAA_22	PF13401.6	gi|345004296|ref|YP_004807149.1|	-	2.1e-05	24.8	0.0	0.00013	22.2	0.0	2.2	2	1	0	2	2	2	1	AAA	domain
ResIII	PF04851.15	gi|345004296|ref|YP_004807149.1|	-	0.00018	21.5	0.0	0.0042	17.1	0.0	2.2	2	0	0	2	2	2	1	Type	III	restriction	enzyme,	res	subunit
AAA_16	PF13191.6	gi|345004296|ref|YP_004807149.1|	-	0.00088	19.7	0.0	0.03	14.7	0.0	2.6	2	0	0	2	2	2	1	AAA	ATPase	domain
DEAD_2	PF06733.15	gi|345004296|ref|YP_004807149.1|	-	0.00095	18.8	0.0	0.0015	18.2	0.0	1.3	1	0	0	1	1	1	1	DEAD_2
DEAD	PF00270.29	gi|345004296|ref|YP_004807149.1|	-	0.0023	17.7	0.0	0.12	12.2	0.0	2.3	2	0	0	2	2	2	1	DEAD/DEAH	box	helicase
AAA_30	PF13604.6	gi|345004296|ref|YP_004807149.1|	-	0.019	14.7	0.1	0.71	9.6	0.0	2.3	2	0	0	2	2	2	0	AAA	domain
OrsD	PF12013.8	gi|345004296|ref|YP_004807149.1|	-	0.027	14.9	0.1	0.057	13.9	0.1	1.5	1	0	0	1	1	1	0	Orsellinic	acid/F9775	biosynthesis	cluster	protein	D
DXP_redisom_C	PF08436.12	gi|345004296|ref|YP_004807149.1|	-	0.11	12.7	0.0	0.27	11.4	0.0	1.6	1	0	0	1	1	1	0	1-deoxy-D-xylulose	5-phosphate	reductoisomerase	C-terminal	domain
PhoH	PF02562.16	gi|345004296|ref|YP_004807149.1|	-	0.16	11.4	0.0	0.29	10.6	0.0	1.3	1	0	0	1	1	1	0	PhoH-like	protein
SR-25	PF10500.9	gi|345004296|ref|YP_004807149.1|	-	2.7	7.5	9.1	4.4	6.9	9.1	1.2	1	0	0	1	1	1	0	Nuclear	RNA-splicing-associated	protein
NMD3	PF04981.13	gi|345004299|ref|YP_004807152.1|	-	1.8e-60	204.5	0.2	2.2e-60	204.1	0.2	1.1	1	0	0	1	1	1	1	NMD3	family
Rpr2	PF04032.16	gi|345004299|ref|YP_004807152.1|	-	0.011	16.0	2.0	0.11	12.7	0.0	2.6	3	0	0	3	3	3	0	RNAse	P	Rpr2/Rpp21/SNM1	subunit	domain
DZR	PF12773.7	gi|345004299|ref|YP_004807152.1|	-	0.058	13.4	5.5	0.59	10.2	3.0	3.0	2	1	0	2	2	2	0	Double	zinc	ribbon
GFA	PF04828.14	gi|345004299|ref|YP_004807152.1|	-	0.16	12.3	2.8	7.8	6.9	0.0	3.3	2	1	1	3	3	3	0	Glutathione-dependent	formaldehyde-activating	enzyme
zinc_ribbon_2	PF13240.6	gi|345004299|ref|YP_004807152.1|	-	1.5	8.6	9.1	2.8	7.8	0.2	3.4	3	0	0	3	3	3	0	zinc-ribbon	domain
Epimerase	PF01370.21	gi|345004300|ref|YP_004807153.1|	-	8.2e-28	97.5	0.0	1e-26	93.9	0.0	2.0	1	1	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
GDP_Man_Dehyd	PF16363.5	gi|345004300|ref|YP_004807153.1|	-	4.6e-20	72.3	0.0	5.6e-19	68.7	0.0	2.0	2	0	0	2	2	2	1	GDP-mannose	4,6	dehydratase
RmlD_sub_bind	PF04321.17	gi|345004300|ref|YP_004807153.1|	-	3.8e-11	42.6	0.0	5.7e-11	42.0	0.0	1.2	1	0	0	1	1	1	1	RmlD	substrate	binding	domain
NAD_binding_10	PF13460.6	gi|345004300|ref|YP_004807153.1|	-	2.7e-08	33.9	0.1	3.8e-08	33.4	0.1	1.2	1	0	0	1	1	1	1	NAD(P)H-binding
NAD_binding_4	PF07993.12	gi|345004300|ref|YP_004807153.1|	-	0.00024	20.3	0.0	0.00036	19.8	0.0	1.2	1	0	0	1	1	1	1	Male	sterility	protein
3Beta_HSD	PF01073.19	gi|345004300|ref|YP_004807153.1|	-	0.00026	20.1	0.0	0.00032	19.8	0.0	1.1	1	0	0	1	1	1	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
Polysacc_synt_2	PF02719.15	gi|345004300|ref|YP_004807153.1|	-	0.0011	18.1	0.0	0.0043	16.2	0.0	1.9	2	1	0	2	2	2	1	Polysaccharide	biosynthesis	protein
FAA_hydrolase	PF01557.18	gi|345004301|ref|YP_004807154.1|	-	5.6e-45	153.7	0.0	6.8e-45	153.4	0.0	1.1	1	0	0	1	1	1	1	Fumarylacetoacetate	(FAA)	hydrolase	family
Peptidase_M48	PF01435.18	gi|345004302|ref|YP_004807155.1|	-	1.6e-41	142.2	0.0	2.6e-41	141.6	0.0	1.3	1	0	0	1	1	1	1	Peptidase	family	M48
Peptidase_M56	PF05569.11	gi|345004302|ref|YP_004807155.1|	-	2.5e-06	26.9	0.3	9e-06	25.1	0.0	1.9	2	0	0	2	2	2	1	BlaR1	peptidase	M56
DUF4157	PF13699.6	gi|345004302|ref|YP_004807155.1|	-	0.047	13.9	0.1	0.15	12.3	0.0	1.9	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4157)
SprT-like	PF10263.9	gi|345004302|ref|YP_004807155.1|	-	0.21	11.5	0.0	0.29	11.0	0.0	1.2	1	0	0	1	1	1	0	SprT-like	family
Tetraspanin	PF00335.20	gi|345004302|ref|YP_004807155.1|	-	1.1	8.9	3.8	0.88	9.2	2.2	1.9	1	1	0	1	1	1	0	Tetraspanin	family
CPBP	PF02517.16	gi|345004302|ref|YP_004807155.1|	-	8.3	6.9	9.5	18	5.8	0.5	2.3	2	0	0	2	2	2	0	CPBP	intramembrane	metalloprotease
DUF3094	PF11293.8	gi|345004303|ref|YP_004807156.1|	-	3.7	7.4	5.1	0.9	9.3	1.1	1.9	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3094)
PfkB	PF00294.24	gi|345004305|ref|YP_004807158.1|	-	2e-43	148.8	1.1	2.4e-43	148.6	1.1	1.0	1	0	0	1	1	1	1	pfkB	family	carbohydrate	kinase
Pyr_redox_2	PF07992.14	gi|345004306|ref|YP_004807159.1|	-	5.1e-38	131.0	0.1	6.7e-38	130.6	0.1	1.1	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox	PF00070.27	gi|345004306|ref|YP_004807159.1|	-	2.9e-11	43.7	0.9	2.1e-10	41.0	0.0	2.6	3	0	0	3	3	3	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_dim	PF02852.22	gi|345004306|ref|YP_004807159.1|	-	2.5e-06	27.7	0.0	6.9e-06	26.3	0.0	1.7	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase,	dimerisation	domain
TrkA_N	PF02254.18	gi|345004306|ref|YP_004807159.1|	-	6.6e-05	23.2	0.3	0.0034	17.6	0.0	2.7	2	0	0	2	2	2	1	TrkA-N	domain
Sacchrp_dh_NADP	PF03435.18	gi|345004306|ref|YP_004807159.1|	-	0.00039	20.7	0.1	0.39	11.0	0.0	2.4	2	0	0	2	2	2	2	Saccharopine	dehydrogenase	NADP	binding	domain
GIDA	PF01134.22	gi|345004306|ref|YP_004807159.1|	-	0.0045	16.1	0.1	0.05	12.7	0.1	2.4	2	0	0	2	2	2	1	Glucose	inhibited	division	protein	A
UDPG_MGDP_dh_N	PF03721.14	gi|345004306|ref|YP_004807159.1|	-	0.018	14.6	0.0	0.033	13.8	0.0	1.4	1	0	0	1	1	1	0	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
DUF364	PF04016.12	gi|345004306|ref|YP_004807159.1|	-	0.043	13.4	0.1	0.099	12.2	0.0	1.7	2	0	0	2	2	2	0	Putative	heavy-metal	chelation
DUF188	PF02639.14	gi|345004306|ref|YP_004807159.1|	-	0.086	12.5	0.0	0.18	11.5	0.0	1.4	1	0	0	1	1	1	0	Uncharacterized	BCR,	YaiI/YqxD	family	COG1671
NAD_binding_8	PF13450.6	gi|345004306|ref|YP_004807159.1|	-	0.094	13.0	0.1	7.6	6.8	0.0	2.6	2	0	0	2	2	2	0	NAD(P)-binding	Rossmann-like	domain
FAD_binding_3	PF01494.19	gi|345004306|ref|YP_004807159.1|	-	0.11	11.7	1.0	2.3	7.4	0.0	2.6	3	0	0	3	3	3	0	FAD	binding	domain
NAD_binding_7	PF13241.6	gi|345004306|ref|YP_004807159.1|	-	0.17	12.4	0.0	1.3	9.5	0.0	2.3	2	0	0	2	2	2	0	Putative	NAD(P)-binding
Pyr_redox_3	PF13738.6	gi|345004306|ref|YP_004807159.1|	-	0.18	11.0	0.1	1.9	7.7	0.0	2.2	2	0	0	2	2	2	0	Pyridine	nucleotide-disulphide	oxidoreductase
HTH_10	PF04967.12	gi|345004307|ref|YP_004807160.1|	-	9.4e-15	54.2	0.0	2.1e-14	53.1	0.0	1.6	1	0	0	1	1	1	1	HTH	DNA	binding	domain
MarR_2	PF12802.7	gi|345004307|ref|YP_004807160.1|	-	9.9e-06	25.4	0.0	2.7e-05	24.0	0.0	1.7	1	0	0	1	1	1	1	MarR	family
HTH_24	PF13412.6	gi|345004307|ref|YP_004807160.1|	-	0.00013	21.5	0.0	0.00026	20.5	0.0	1.5	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_20	PF12840.7	gi|345004307|ref|YP_004807160.1|	-	0.00022	21.2	0.1	0.00087	19.3	0.0	1.9	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_30	PF13556.6	gi|345004307|ref|YP_004807160.1|	-	0.0018	18.0	0.0	0.0067	16.2	0.0	1.9	1	0	0	1	1	1	1	PucR	C-terminal	helix-turn-helix	domain
Sigma70_r4	PF04545.16	gi|345004307|ref|YP_004807160.1|	-	0.0041	16.6	0.0	0.0077	15.7	0.0	1.4	1	0	0	1	1	1	1	Sigma-70,	region	4
HTH_5	PF01022.20	gi|345004307|ref|YP_004807160.1|	-	0.0071	16.2	0.0	0.016	15.1	0.0	1.6	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_1	PF00126.27	gi|345004307|ref|YP_004807160.1|	-	0.012	15.5	0.0	0.038	13.9	0.0	1.8	1	0	0	1	1	1	0	Bacterial	regulatory	helix-turn-helix	protein,	lysR	family
Sigma70_r4_2	PF08281.12	gi|345004307|ref|YP_004807160.1|	-	0.014	15.0	0.0	0.03	14.0	0.0	1.5	1	0	0	1	1	1	0	Sigma-70,	region	4
Fe_dep_repress	PF01325.19	gi|345004307|ref|YP_004807160.1|	-	0.079	13.2	0.0	0.14	12.4	0.0	1.4	1	0	0	1	1	1	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_AsnC-type	PF13404.6	gi|345004307|ref|YP_004807160.1|	-	0.092	12.6	0.1	0.23	11.3	0.1	1.7	1	0	0	1	1	1	0	AsnC-type	helix-turn-helix	domain
MarR	PF01047.22	gi|345004307|ref|YP_004807160.1|	-	0.15	12.1	0.0	0.58	10.1	0.0	2.0	2	0	0	2	2	2	0	MarR	family
Copper-bind	PF00127.20	gi|345004308|ref|YP_004807161.1|	-	6.2e-16	58.7	0.0	8.4e-16	58.2	0.0	1.2	1	0	0	1	1	1	1	Copper	binding	proteins,	plastocyanin/azurin	family
TAT_signal	PF10518.9	gi|345004308|ref|YP_004807161.1|	-	7.5e-05	22.4	1.5	0.00019	21.2	1.5	1.7	1	0	0	1	1	1	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
Cupredoxin_1	PF13473.6	gi|345004308|ref|YP_004807161.1|	-	0.12	12.5	0.1	0.31	11.2	0.1	1.7	1	1	0	1	1	1	0	Cupredoxin-like	domain
Oxidored_molyb	PF00174.19	gi|345004309|ref|YP_004807162.1|	-	2.3e-49	167.3	0.0	3.7e-49	166.6	0.0	1.2	1	0	0	1	1	1	1	Oxidoreductase	molybdopterin	binding	domain
Mo-co_dimer	PF03404.16	gi|345004309|ref|YP_004807162.1|	-	3.6e-10	40.0	0.1	1e-09	38.5	0.1	1.7	1	1	0	1	1	1	1	Mo-co	oxidoreductase	dimerisation	domain
UCR_Fe-S_N	PF10399.9	gi|345004309|ref|YP_004807162.1|	-	0.062	12.7	4.0	0.23	10.9	4.0	2.0	1	1	0	1	1	1	0	Ubiquitinol-cytochrome	C	reductase	Fe-S	subunit	TAT	signal
TAT_signal	PF10518.9	gi|345004309|ref|YP_004807162.1|	-	0.33	10.8	2.1	0.6	10.1	2.1	1.4	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
DUF3558	PF12079.8	gi|345004309|ref|YP_004807162.1|	-	1.5	8.8	6.9	3.6	7.5	6.9	1.7	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3558)
PT	PF04886.12	gi|345004309|ref|YP_004807162.1|	-	2.9	7.5	22.1	6.6	6.4	22.1	1.6	1	0	0	1	1	1	0	PT	repeat
FKBP_C	PF00254.28	gi|345004310|ref|YP_004807163.1|	-	2.1e-12	47.2	0.0	3.9e-12	46.3	0.0	1.5	1	1	0	1	1	1	1	FKBP-type	peptidyl-prolyl	cis-trans	isomerase
Ribosomal_L16	PF00252.18	gi|345004311|ref|YP_004807164.1|	-	9.3e-30	103.3	0.0	1.1e-29	103.1	0.0	1.0	1	0	0	1	1	1	1	Ribosomal	protein	L16p/L10e
NucS	PF01939.16	gi|345004312|ref|YP_004807165.1|	-	6.9e-62	208.8	0.0	7.8e-62	208.6	0.0	1.0	1	0	0	1	1	1	1	Endonuclease	NucS
YhcG_C	PF06250.11	gi|345004312|ref|YP_004807165.1|	-	0.0047	16.8	0.0	0.0069	16.2	0.0	1.2	1	0	0	1	1	1	1	YhcG	PDDEXK	nuclease	domain
SpoIIIAH	PF12685.7	gi|345004313|ref|YP_004807166.1|	-	9.1	6.0	20.0	54	3.5	20.0	1.8	1	1	0	1	1	1	0	SpoIIIAH-like	protein
ECH_1	PF00378.20	gi|345004314|ref|YP_004807167.1|	-	7.3e-55	186.0	0.0	8.1e-55	185.8	0.0	1.0	1	0	0	1	1	1	1	Enoyl-CoA	hydratase/isomerase
ECH_2	PF16113.5	gi|345004314|ref|YP_004807167.1|	-	2.1e-32	112.9	0.0	2.5e-32	112.7	0.0	1.0	1	0	0	1	1	1	1	Enoyl-CoA	hydratase/isomerase
DoxX_3	PF13781.6	gi|345004315|ref|YP_004807168.1|	-	2.8e-05	24.7	2.4	6.1e-05	23.6	2.1	1.9	1	1	1	2	2	2	1	DoxX-like	family
DoxX	PF07681.12	gi|345004315|ref|YP_004807168.1|	-	4.8e-05	23.9	3.3	9.2e-05	23.0	3.3	1.4	1	0	0	1	1	1	1	DoxX
DUF308	PF03729.13	gi|345004315|ref|YP_004807168.1|	-	0.14	12.5	5.6	0.36	11.2	5.3	1.9	1	1	0	1	1	1	0	Short	repeat	of	unknown	function	(DUF308)
DUF2800	PF10926.8	gi|345004316|ref|YP_004807169.1|	-	0.00095	18.5	0.1	0.0014	18.0	0.1	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF2800)
OrfB_Zn_ribbon	PF07282.11	gi|345004317|ref|YP_004807170.1|	-	1.1e-21	76.5	0.3	2.4e-21	75.4	0.3	1.6	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
OrfB_IS605	PF01385.19	gi|345004317|ref|YP_004807170.1|	-	4.3e-20	72.1	0.3	1e-19	70.9	0.3	1.5	1	0	0	1	1	1	1	Probable	transposase
HTH_OrfB_IS605	PF12323.8	gi|345004317|ref|YP_004807170.1|	-	0.00015	21.2	0.1	0.00042	19.8	0.1	1.7	1	0	0	1	1	1	1	Helix-turn-helix	domain
DUF3445	PF11927.8	gi|345004317|ref|YP_004807170.1|	-	0.062	12.9	0.2	0.11	12.1	0.2	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3445)
DUF1451	PF07295.11	gi|345004317|ref|YP_004807170.1|	-	0.15	12.1	1.9	0.31	11.1	1.9	1.6	1	0	0	1	1	1	0	Zinc-ribbon	containing	domain
Aldedh	PF00171.22	gi|345004319|ref|YP_004807172.1|	-	7.5e-143	476.4	0.0	9.4e-143	476.1	0.0	1.0	1	0	0	1	1	1	1	Aldehyde	dehydrogenase	family
OmdA	PF13376.6	gi|345004319|ref|YP_004807172.1|	-	0.005	16.8	0.7	0.01	15.8	0.7	1.4	1	0	0	1	1	1	1	Bacteriocin-protection,	YdeI	or	OmpD-Associated
LuxC	PF05893.14	gi|345004319|ref|YP_004807172.1|	-	0.024	13.7	0.0	0.043	12.9	0.0	1.4	1	1	0	1	1	1	0	Acyl-CoA	reductase	(LuxC)
SPOUT_MTase_2	PF14419.6	gi|345004319|ref|YP_004807172.1|	-	0.1	12.0	0.0	0.28	10.5	0.0	1.7	2	0	0	2	2	2	0	AF2226-like	SPOUT	RNA	Methylase	fused	to	THUMP
RIO1	PF01163.22	gi|345004320|ref|YP_004807173.1|	-	2.4e-12	46.8	0.1	4e-12	46.1	0.1	1.3	1	0	0	1	1	1	1	RIO1	family
APH	PF01636.23	gi|345004320|ref|YP_004807173.1|	-	1.4e-07	31.7	0.0	0.008	16.1	0.2	2.3	1	1	1	2	2	2	2	Phosphotransferase	enzyme	family
Kdo	PF06293.14	gi|345004320|ref|YP_004807173.1|	-	9.9e-06	25.0	0.0	1.8e-05	24.2	0.0	1.4	1	0	0	1	1	1	1	Lipopolysaccharide	kinase	(Kdo/WaaP)	family
Pkinase	PF00069.25	gi|345004320|ref|YP_004807173.1|	-	6.6e-05	22.4	0.0	8.6e-05	22.0	0.0	1.2	1	0	0	1	1	1	1	Protein	kinase	domain
WaaY	PF06176.11	gi|345004320|ref|YP_004807173.1|	-	0.0063	16.2	0.0	0.0095	15.6	0.0	1.3	1	0	0	1	1	1	1	Lipopolysaccharide	core	biosynthesis	protein	(WaaY)
Kinase-PolyVal	PF18762.1	gi|345004320|ref|YP_004807173.1|	-	0.012	15.5	0.0	0.021	14.8	0.0	1.3	1	0	0	1	1	1	0	Serine/Threonine/Tyrosine	Kinase	found	in	polyvalent	proteins
LppA	PF16708.5	gi|345004320|ref|YP_004807173.1|	-	0.12	12.3	0.0	0.22	11.4	0.0	1.4	1	0	0	1	1	1	0	Lipoprotein	confined	to	pathogenic	Mycobacterium
Carb_kinase	PF01256.17	gi|345004321|ref|YP_004807174.1|	-	1e-43	149.6	0.1	1.5e-43	149.0	0.1	1.2	1	0	0	1	1	1	1	Carbohydrate	kinase
YjeF_N	PF03853.15	gi|345004321|ref|YP_004807174.1|	-	6.4e-41	140.1	3.6	1.7e-40	138.7	0.5	2.3	2	0	0	2	2	2	1	YjeF-related	protein	N-terminus
Phos_pyr_kin	PF08543.12	gi|345004321|ref|YP_004807174.1|	-	1.3e-05	24.7	0.0	2.2e-05	24.0	0.0	1.3	1	0	0	1	1	1	1	Phosphomethylpyrimidine	kinase
HK	PF02110.15	gi|345004321|ref|YP_004807174.1|	-	0.00011	21.7	0.1	0.00018	21.0	0.1	1.3	1	0	0	1	1	1	1	Hydroxyethylthiazole	kinase	family
MoaC	PF01967.21	gi|345004322|ref|YP_004807175.1|	-	3e-47	160.1	2.8	3.7e-47	159.8	2.8	1.1	1	0	0	1	1	1	1	MoaC	family
GTP-bdg_N	PF13167.6	gi|345004323|ref|YP_004807176.1|	-	2.6e-21	76.1	0.0	7.7e-21	74.6	0.0	1.9	1	0	0	1	1	1	1	GTP-binding	GTPase	N-terminal
MMR_HSR1	PF01926.23	gi|345004323|ref|YP_004807176.1|	-	2e-18	66.5	0.1	5.2e-18	65.2	0.0	1.7	2	0	0	2	2	2	1	50S	ribosome-binding	GTPase
GTP-bdg_M	PF16360.5	gi|345004323|ref|YP_004807176.1|	-	8.5e-15	55.1	7.6	2e-14	53.9	7.6	1.7	1	0	0	1	1	1	1	GTP-binding	GTPase	Middle	Region
GTP_EFTU	PF00009.27	gi|345004323|ref|YP_004807176.1|	-	5.3e-10	39.1	0.0	1.4e-09	37.8	0.0	1.7	1	0	0	1	1	1	1	Elongation	factor	Tu	GTP	binding	domain
RsgA_GTPase	PF03193.16	gi|345004323|ref|YP_004807176.1|	-	5.9e-07	29.6	0.0	0.02	14.8	0.0	2.5	2	0	0	2	2	2	2	RsgA	GTPase
cobW	PF02492.19	gi|345004323|ref|YP_004807176.1|	-	0.00041	20.0	0.4	0.094	12.3	0.0	2.6	2	1	1	3	3	3	1	CobW/HypB/UreG,	nucleotide-binding	domain
AAA_18	PF13238.6	gi|345004323|ref|YP_004807176.1|	-	0.0059	17.2	0.2	0.042	14.4	0.0	2.6	2	1	0	2	2	2	1	AAA	domain
FeoB_N	PF02421.18	gi|345004323|ref|YP_004807176.1|	-	0.007	15.9	0.1	4	6.9	0.0	2.8	4	0	0	4	4	4	1	Ferrous	iron	transport	protein	B
AAA_14	PF13173.6	gi|345004323|ref|YP_004807176.1|	-	0.015	15.3	0.0	0.027	14.5	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
AAA_25	PF13481.6	gi|345004323|ref|YP_004807176.1|	-	0.019	14.5	0.3	2	7.9	0.0	3.3	3	1	0	3	3	3	0	AAA	domain
AAA_22	PF13401.6	gi|345004323|ref|YP_004807176.1|	-	0.021	15.1	0.1	0.061	13.6	0.1	1.8	1	1	0	1	1	1	0	AAA	domain
TsaE	PF02367.17	gi|345004323|ref|YP_004807176.1|	-	0.025	14.6	0.0	0.4	10.7	0.0	2.4	2	0	0	2	2	2	0	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
Arf	PF00025.21	gi|345004323|ref|YP_004807176.1|	-	0.042	13.3	0.2	3.7	7.0	0.0	2.6	2	1	1	3	3	3	0	ADP-ribosylation	factor	family
ABC_tran	PF00005.27	gi|345004323|ref|YP_004807176.1|	-	0.042	14.4	0.0	0.12	12.9	0.0	1.9	1	0	0	1	1	1	0	ABC	transporter
RuvB_N	PF05496.12	gi|345004323|ref|YP_004807176.1|	-	0.044	13.5	0.0	0.097	12.4	0.0	1.5	1	0	0	1	1	1	0	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
Zeta_toxin	PF06414.12	gi|345004323|ref|YP_004807176.1|	-	0.055	12.8	0.0	0.32	10.3	0.0	2.2	2	0	0	2	2	2	0	Zeta	toxin
AAA_33	PF13671.6	gi|345004323|ref|YP_004807176.1|	-	0.097	12.8	0.7	0.41	10.8	0.1	2.5	2	2	0	2	2	2	0	AAA	domain
Roc	PF08477.13	gi|345004323|ref|YP_004807176.1|	-	0.12	12.6	0.0	1.6	9.0	0.0	2.3	1	1	0	1	1	1	0	Ras	of	Complex,	Roc,	domain	of	DAPkinase
MMR_HSR1_Xtn	PF16897.5	gi|345004323|ref|YP_004807176.1|	-	0.13	12.2	0.0	0.28	11.2	0.0	1.5	1	0	0	1	1	1	0	C-terminal	region	of	MMR_HSR1	domain
AAA_16	PF13191.6	gi|345004323|ref|YP_004807176.1|	-	0.41	11.0	4.5	0.16	12.3	1.0	2.3	1	1	1	2	2	2	0	AAA	ATPase	domain
MCU	PF04678.13	gi|345004323|ref|YP_004807176.1|	-	0.45	10.6	1.5	13	5.8	1.2	2.5	1	1	0	1	1	1	0	Mitochondrial	calcium	uniporter
HEAT_2	PF13646.6	gi|345004324|ref|YP_004807177.1|	-	3.5e-33	113.8	18.1	6.5e-18	64.9	2.2	4.5	3	1	4	7	7	7	5	HEAT	repeats
HEAT_PBS	PF03130.16	gi|345004324|ref|YP_004807177.1|	-	5.3e-14	51.4	16.9	0.0042	17.6	0.5	7.1	6	1	0	6	6	6	3	PBS	lyase	HEAT-like	repeat
HEAT_EZ	PF13513.6	gi|345004324|ref|YP_004807177.1|	-	5e-07	30.1	4.3	0.0087	16.5	0.2	5.0	5	0	0	5	5	5	2	HEAT-like	repeat
HEAT	PF02985.22	gi|345004324|ref|YP_004807177.1|	-	7.3e-06	25.8	0.0	0.054	13.8	0.1	4.0	3	0	0	3	3	3	1	HEAT	repeat
ERAP1_C	PF11838.8	gi|345004324|ref|YP_004807177.1|	-	4.6e-05	23.1	1.7	8.3e-05	22.3	1.7	1.4	1	0	0	1	1	1	1	ERAP1-like	C-terminal	domain
Arm	PF00514.23	gi|345004324|ref|YP_004807177.1|	-	0.0033	17.4	0.2	0.22	11.6	0.0	3.0	3	1	0	3	3	3	1	Armadillo/beta-catenin-like	repeat
DNA_alkylation	PF08713.11	gi|345004324|ref|YP_004807177.1|	-	0.009	15.7	0.1	0.018	14.7	0.1	1.6	1	0	0	1	1	1	1	DNA	alkylation	repair	enzyme
TBCC_N	PF16752.5	gi|345004324|ref|YP_004807177.1|	-	0.2	12.1	1.8	4.8	7.6	0.6	3.3	2	1	0	2	2	2	0	Tubulin-specific	chaperone	C	N-terminal	domain
DJ-1_PfpI	PF01965.24	gi|345004325|ref|YP_004807178.1|	-	8e-13	48.5	2.0	1.8e-11	44.1	2.0	2.2	1	1	0	1	1	1	1	DJ-1/PfpI	family
ThiJ_like	PF17124.5	gi|345004325|ref|YP_004807178.1|	-	8.4e-07	28.9	0.1	1.2e-05	25.1	0.1	2.1	1	1	0	1	1	1	1	ThiJ/PfpI	family-like
CDP-OH_P_transf	PF01066.21	gi|345004326|ref|YP_004807179.1|	-	9.5e-09	35.9	1.5	9.5e-09	35.9	1.5	2.5	2	1	0	2	2	2	1	CDP-alcohol	phosphatidyltransferase
Flavi_NS2A	PF01005.19	gi|345004326|ref|YP_004807179.1|	-	0.36	11.0	5.3	0.63	10.2	4.6	1.6	1	1	0	1	1	1	0	Flavivirus	non-structural	protein	NS2A
Copper-bind	PF00127.20	gi|345004327|ref|YP_004807180.1|	-	3.1e-15	56.4	0.0	5.5e-15	55.6	0.0	1.4	1	1	0	1	1	1	1	Copper	binding	proteins,	plastocyanin/azurin	family
Cupredoxin_1	PF13473.6	gi|345004327|ref|YP_004807180.1|	-	2.8e-05	24.2	0.0	0.25	11.5	0.1	2.1	2	0	0	2	2	2	2	Cupredoxin-like	domain
Ribosomal_S3Ae	PF01015.18	gi|345004328|ref|YP_004807181.1|	-	1e-54	185.2	0.0	1.2e-54	184.9	0.0	1.0	1	0	0	1	1	1	1	Ribosomal	S3Ae	family
Gp_UL130	PF11668.8	gi|345004329|ref|YP_004807182.1|	-	0.045	13.7	0.0	0.049	13.6	0.0	1.0	1	0	0	1	1	1	0	HCMV	glycoprotein	pUL130
Ribosomal_S13_N	PF08069.12	gi|345004331|ref|YP_004807184.1|	-	3e-20	72.0	0.0	4.7e-20	71.4	0.0	1.3	1	0	0	1	1	1	1	Ribosomal	S13/S15	N-terminal	domain
Ribosomal_S15	PF00312.22	gi|345004331|ref|YP_004807184.1|	-	7e-14	51.8	1.2	1.1e-13	51.1	1.2	1.4	1	0	0	1	1	1	1	Ribosomal	protein	S15
DUF4298	PF14131.6	gi|345004331|ref|YP_004807184.1|	-	0.12	12.3	0.6	0.23	11.4	0.5	1.6	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4298)
Aldedh	PF00171.22	gi|345004333|ref|YP_004807186.1|	-	7.5e-142	473.1	0.0	9.7e-142	472.7	0.0	1.1	1	0	0	1	1	1	1	Aldehyde	dehydrogenase	family
Lactonase	PF10282.9	gi|345004334|ref|YP_004807187.1|	-	0.0002	20.8	0.0	0.0016	17.8	0.0	2.7	2	1	0	2	2	2	1	Lactonase,	7-bladed	beta-propeller
Na_H_Exchanger	PF00999.21	gi|345004335|ref|YP_004807188.1|	-	2.3e-50	171.5	49.3	2.9e-50	171.2	49.3	1.1	1	0	0	1	1	1	1	Sodium/hydrogen	exchanger	family
Pyr_redox_2	PF07992.14	gi|345004337|ref|YP_004807190.1|	-	3.2e-50	171.0	4.7	5e-50	170.4	4.7	1.3	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_dim	PF02852.22	gi|345004337|ref|YP_004807190.1|	-	4.5e-23	81.6	0.8	9.6e-23	80.5	0.8	1.6	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase,	dimerisation	domain
Pyr_redox	PF00070.27	gi|345004337|ref|YP_004807190.1|	-	1.1e-14	54.7	4.0	1.1e-13	51.5	0.3	2.8	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_3	PF13738.6	gi|345004337|ref|YP_004807190.1|	-	5.5e-08	32.4	0.6	2.1e-07	30.5	0.0	2.0	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
K_oxygenase	PF13434.6	gi|345004337|ref|YP_004807190.1|	-	2.9e-06	26.7	0.0	8.8e-05	21.8	0.0	2.2	1	1	1	2	2	2	1	L-lysine	6-monooxygenase	(NADPH-requiring)
GIDA	PF01134.22	gi|345004337|ref|YP_004807190.1|	-	0.00014	21.1	3.0	0.00044	19.5	0.4	2.2	1	1	1	2	2	2	1	Glucose	inhibited	division	protein	A
NAD_binding_7	PF13241.6	gi|345004337|ref|YP_004807190.1|	-	0.08	13.4	2.4	0.17	12.3	0.0	2.6	3	1	0	3	3	3	0	Putative	NAD(P)-binding
3HCDH_N	PF02737.18	gi|345004337|ref|YP_004807190.1|	-	2.4	8.0	6.9	0.95	9.3	0.1	2.7	3	1	0	3	3	3	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
HxlR	PF01638.17	gi|345004338|ref|YP_004807191.1|	-	6.6e-15	54.7	0.0	7.5e-15	54.6	0.0	1.1	1	0	0	1	1	1	1	HxlR-like	helix-turn-helix
MarR	PF01047.22	gi|345004338|ref|YP_004807191.1|	-	0.00011	22.1	0.1	0.00029	20.7	0.0	1.7	2	0	0	2	2	2	1	MarR	family
PadR	PF03551.14	gi|345004338|ref|YP_004807191.1|	-	0.0029	17.5	0.0	0.0037	17.2	0.0	1.3	1	1	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
HTH_34	PF13601.6	gi|345004338|ref|YP_004807191.1|	-	0.015	15.5	0.0	0.019	15.1	0.0	1.1	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
MarR_2	PF12802.7	gi|345004338|ref|YP_004807191.1|	-	0.022	14.7	0.0	0.032	14.1	0.0	1.3	1	0	0	1	1	1	0	MarR	family
HTH_Crp_2	PF13545.6	gi|345004338|ref|YP_004807191.1|	-	0.061	13.3	0.0	0.095	12.7	0.0	1.3	1	0	0	1	1	1	0	Crp-like	helix-turn-helix	domain
HTH_20	PF12840.7	gi|345004338|ref|YP_004807191.1|	-	0.078	13.1	0.0	0.13	12.4	0.0	1.3	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_24	PF13412.6	gi|345004338|ref|YP_004807191.1|	-	0.12	11.9	0.0	0.21	11.2	0.0	1.4	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
Pyr_redox_2	PF07992.14	gi|345004339|ref|YP_004807192.1|	-	1.4e-58	198.5	3.1	2.6e-58	197.6	3.1	1.4	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_dim	PF02852.22	gi|345004339|ref|YP_004807192.1|	-	2.8e-32	111.3	0.8	4.7e-32	110.5	0.8	1.4	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase,	dimerisation	domain
Pyr_redox	PF00070.27	gi|345004339|ref|YP_004807192.1|	-	2.3e-17	63.3	0.2	2.3e-17	63.3	0.2	2.6	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_3	PF13738.6	gi|345004339|ref|YP_004807192.1|	-	0.00019	20.8	0.0	0.00019	20.8	0.0	2.2	2	1	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_oxidored	PF12831.7	gi|345004339|ref|YP_004807192.1|	-	0.00064	19.2	0.2	0.0012	18.3	0.2	1.5	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
AlaDh_PNT_C	PF01262.21	gi|345004339|ref|YP_004807192.1|	-	0.00082	18.7	1.1	0.25	10.6	0.0	2.6	2	0	0	2	2	2	2	Alanine	dehydrogenase/PNT,	C-terminal	domain
3HCDH_N	PF02737.18	gi|345004339|ref|YP_004807192.1|	-	0.0046	16.9	1.0	0.0076	16.1	0.2	1.7	2	0	0	2	2	2	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
Multi_ubiq	PF14452.6	gi|345004339|ref|YP_004807192.1|	-	0.032	14.5	0.9	0.33	11.2	0.1	2.5	2	0	0	2	2	2	0	Multiubiquitin
FAD_binding_2	PF00890.24	gi|345004339|ref|YP_004807192.1|	-	0.066	12.3	6.8	0.059	12.4	2.8	2.3	2	0	0	2	2	2	0	FAD	binding	domain
GIDA	PF01134.22	gi|345004339|ref|YP_004807192.1|	-	0.13	11.4	7.1	0.021	13.9	2.2	2.2	3	1	0	3	3	3	0	Glucose	inhibited	division	protein	A
NAD_binding_8	PF13450.6	gi|345004339|ref|YP_004807192.1|	-	0.18	12.1	4.2	5.8	7.2	0.1	2.5	2	0	0	2	2	2	0	NAD(P)-binding	Rossmann-like	domain
SHOCT	PF09851.9	gi|345004340|ref|YP_004807193.1|	-	1.6e-07	30.8	1.5	2.6e-07	30.1	1.5	1.2	1	0	0	1	1	1	1	Short	C-terminal	domain
DUF1707	PF08044.11	gi|345004340|ref|YP_004807193.1|	-	6.3e-05	23.0	0.6	0.00013	22.0	0.6	1.4	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1707)
DctQ	PF04290.12	gi|345004340|ref|YP_004807193.1|	-	0.057	13.3	6.2	0.075	13.0	6.2	1.1	1	0	0	1	1	1	0	Tripartite	ATP-independent	periplasmic	transporters,	DctQ	component
DUF2207	PF09972.9	gi|345004340|ref|YP_004807193.1|	-	0.27	9.9	2.1	0.33	9.7	2.1	1.1	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2207)
Insulin_TMD	PF17870.1	gi|345004340|ref|YP_004807193.1|	-	7.3	6.8	7.3	10	6.3	1.5	2.2	2	0	0	2	2	2	0	Insulin	receptor	trans-membrane	segment
Pyr_redox_2	PF07992.14	gi|345004341|ref|YP_004807194.1|	-	1.1e-60	205.3	0.3	1.4e-60	205.0	0.3	1.1	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_dim	PF02852.22	gi|345004341|ref|YP_004807194.1|	-	2.8e-36	124.1	0.1	5.3e-36	123.2	0.1	1.5	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase,	dimerisation	domain
Pyr_redox	PF00070.27	gi|345004341|ref|YP_004807194.1|	-	1.1e-20	74.0	2.5	7.8e-19	68.0	0.0	3.3	3	0	0	3	3	3	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_3	PF13738.6	gi|345004341|ref|YP_004807194.1|	-	2.9e-17	62.9	0.4	1.6e-16	60.5	0.4	2.0	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
GIDA	PF01134.22	gi|345004341|ref|YP_004807194.1|	-	4.8e-07	29.2	1.2	0.0066	15.6	1.8	2.5	2	1	0	2	2	2	2	Glucose	inhibited	division	protein	A
DAO	PF01266.24	gi|345004341|ref|YP_004807194.1|	-	5.6e-05	22.9	6.4	0.15	11.6	0.1	3.3	3	0	0	3	3	3	2	FAD	dependent	oxidoreductase
NAD_binding_8	PF13450.6	gi|345004341|ref|YP_004807194.1|	-	9.7e-05	22.5	5.3	0.042	14.1	0.1	3.0	3	0	0	3	3	3	2	NAD(P)-binding	Rossmann-like	domain
3HCDH_N	PF02737.18	gi|345004341|ref|YP_004807194.1|	-	0.00012	22.0	0.3	0.011	15.6	0.0	2.4	2	0	0	2	2	2	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
AlaDh_PNT_C	PF01262.21	gi|345004341|ref|YP_004807194.1|	-	0.00074	18.9	0.2	0.027	13.8	0.0	2.5	2	0	0	2	2	2	1	Alanine	dehydrogenase/PNT,	C-terminal	domain
FAD_oxidored	PF12831.7	gi|345004341|ref|YP_004807194.1|	-	0.0011	18.5	0.3	0.0034	16.8	0.0	2.0	2	0	0	2	2	2	1	FAD	dependent	oxidoreductase
FAD_binding_2	PF00890.24	gi|345004341|ref|YP_004807194.1|	-	0.0012	18.0	7.7	0.0038	16.4	1.2	3.2	2	1	2	4	4	4	1	FAD	binding	domain
HI0933_like	PF03486.14	gi|345004341|ref|YP_004807194.1|	-	0.0021	16.9	5.2	0.043	12.5	0.8	3.1	2	1	1	3	3	3	1	HI0933-like	protein
K_oxygenase	PF13434.6	gi|345004341|ref|YP_004807194.1|	-	0.0045	16.2	0.0	0.0077	15.4	0.0	1.4	1	0	0	1	1	1	1	L-lysine	6-monooxygenase	(NADPH-requiring)
Lycopene_cycl	PF05834.12	gi|345004341|ref|YP_004807194.1|	-	0.0055	15.8	0.8	0.36	9.8	1.1	2.2	2	0	0	2	2	2	1	Lycopene	cyclase	protein
NAD_binding_7	PF13241.6	gi|345004341|ref|YP_004807194.1|	-	0.046	14.1	0.1	0.14	12.6	0.0	1.8	2	0	0	2	2	1	0	Putative	NAD(P)-binding
UDPG_MGDP_dh_N	PF03721.14	gi|345004341|ref|YP_004807194.1|	-	0.11	12.1	4.7	0.22	11.1	1.2	2.7	2	1	0	2	2	2	0	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
HTH_20	PF12840.7	gi|345004342|ref|YP_004807195.1|	-	8e-11	41.8	1.4	2.1e-10	40.5	0.2	2.1	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_5	PF01022.20	gi|345004342|ref|YP_004807195.1|	-	1.1e-06	28.4	0.1	4.5e-06	26.4	0.1	2.0	1	1	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_12	PF08461.10	gi|345004342|ref|YP_004807195.1|	-	0.00029	20.7	0.3	0.00068	19.5	0.3	1.7	1	0	0	1	1	1	1	Ribonuclease	R	winged-helix	domain
Nop16	PF09420.10	gi|345004342|ref|YP_004807195.1|	-	0.00051	20.1	0.7	0.00069	19.7	0.7	1.1	1	0	0	1	1	1	1	Ribosome	biogenesis	protein	Nop16
TFIIE_alpha	PF02002.17	gi|345004342|ref|YP_004807195.1|	-	0.0019	18.0	0.8	0.022	14.6	0.1	2.2	1	1	1	2	2	2	1	TFIIE	alpha	subunit
FUR	PF01475.19	gi|345004342|ref|YP_004807195.1|	-	0.0022	18.2	0.1	0.0041	17.3	0.1	1.4	1	0	0	1	1	1	1	Ferric	uptake	regulator	family
PadR	PF03551.14	gi|345004342|ref|YP_004807195.1|	-	0.0087	16.0	0.1	0.016	15.2	0.1	1.5	1	0	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
Penicillinase_R	PF03965.16	gi|345004342|ref|YP_004807195.1|	-	0.034	14.5	0.2	0.074	13.4	0.2	1.8	1	1	0	1	1	1	0	Penicillinase	repressor
RPA_interact_M	PF14767.6	gi|345004342|ref|YP_004807195.1|	-	0.19	12.3	2.9	0.39	11.3	0.2	2.3	2	1	0	2	2	2	0	Replication	protein	A	interacting	middle
Type2_restr_D3	PF16902.5	gi|345004342|ref|YP_004807195.1|	-	0.24	11.4	1.9	0.31	11.0	0.5	1.8	2	0	0	2	2	2	0	Type-2	restriction	enzyme	D3	domain
E1-E2_ATPase	PF00122.20	gi|345004343|ref|YP_004807196.1|	-	6.2e-52	175.7	0.4	1.6e-51	174.4	0.0	1.9	2	0	0	2	2	2	1	E1-E2	ATPase
Hydrolase	PF00702.26	gi|345004343|ref|YP_004807196.1|	-	3.2e-40	138.7	4.5	6e-40	137.8	4.5	1.5	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
HMA	PF00403.26	gi|345004343|ref|YP_004807196.1|	-	5.3e-10	39.6	1.2	1.1e-09	38.6	0.2	2.2	2	0	0	2	2	2	1	Heavy-metal-associated	domain
Hydrolase_3	PF08282.12	gi|345004343|ref|YP_004807196.1|	-	2.8e-06	27.3	1.2	0.00022	21.0	1.0	2.4	2	0	0	2	2	2	1	haloacid	dehalogenase-like	hydrolase
HAD	PF12710.7	gi|345004343|ref|YP_004807196.1|	-	0.0083	16.5	0.4	0.04	14.3	0.2	2.2	2	1	0	2	2	2	1	haloacid	dehalogenase-like	hydrolase
HMA	PF00403.26	gi|345004344|ref|YP_004807197.1|	-	4.1e-14	52.8	0.7	4.5e-14	52.6	0.7	1.0	1	0	0	1	1	1	1	Heavy-metal-associated	domain
DUF3606	PF12244.8	gi|345004344|ref|YP_004807197.1|	-	0.075	13.0	0.1	0.22	11.5	0.1	1.8	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3606)
DUF4162	PF13732.6	gi|345004344|ref|YP_004807197.1|	-	0.099	13.4	0.0	0.099	13.4	0.0	1.0	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4162)
Fer2_BFD	PF04324.15	gi|345004344|ref|YP_004807197.1|	-	0.2	12.0	3.1	10	6.6	0.9	2.8	2	1	1	3	3	3	0	BFD-like	[2Fe-2S]	binding	domain
Phos_pyr_kin	PF08543.12	gi|345004345|ref|YP_004807198.1|	-	6.9e-83	277.8	4.6	8.8e-83	277.5	4.6	1.1	1	0	0	1	1	1	1	Phosphomethylpyrimidine	kinase
ThiP_synth	PF10120.9	gi|345004345|ref|YP_004807198.1|	-	2.5e-52	176.8	0.1	6.2e-52	175.5	0.0	1.7	2	0	0	2	2	2	1	Thiamine-phosphate	synthase
PfkB	PF00294.24	gi|345004345|ref|YP_004807198.1|	-	1.3e-11	44.4	1.3	2.1e-11	43.7	1.3	1.2	1	0	0	1	1	1	1	pfkB	family	carbohydrate	kinase
HK	PF02110.15	gi|345004345|ref|YP_004807198.1|	-	0.0016	17.9	1.0	0.016	14.6	1.0	2.0	1	1	0	1	1	1	1	Hydroxyethylthiazole	kinase	family
TENA_THI-4	PF03070.16	gi|345004346|ref|YP_004807199.1|	-	6.4e-47	160.1	0.0	7.2e-47	159.9	0.0	1.0	1	0	0	1	1	1	1	TENA/THI-4/PQQC	family
TENA_THI-4	PF03070.16	gi|345004347|ref|YP_004807200.1|	-	1.1e-13	51.6	0.0	1.4e-13	51.1	0.0	1.1	1	0	0	1	1	1	1	TENA/THI-4/PQQC	family
CobA_CobO_BtuR	PF02572.15	gi|345004347|ref|YP_004807200.1|	-	8.1e-13	49.0	0.0	1.2e-12	48.5	0.0	1.2	1	0	0	1	1	1	1	ATP:corrinoid	adenosyltransferase	BtuR/CobO/CobP
GATase_3	PF07685.14	gi|345004348|ref|YP_004807201.1|	-	1.8e-39	135.4	0.0	2.7e-39	134.8	0.0	1.3	1	0	0	1	1	1	1	CobB/CobQ-like	glutamine	amidotransferase	domain
CbiA	PF01656.23	gi|345004348|ref|YP_004807201.1|	-	6.8e-17	61.7	0.0	1.2e-16	61.0	0.0	1.3	1	0	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
AAA_26	PF13500.6	gi|345004348|ref|YP_004807201.1|	-	1.7e-10	41.0	0.0	2e-09	37.6	0.0	2.1	1	1	0	1	1	1	1	AAA	domain
DUF1611	PF07755.11	gi|345004348|ref|YP_004807201.1|	-	0.0082	15.4	1.9	2.9	7.1	0.2	3.8	4	0	0	4	4	4	1	Domain	of	unknown	function	(DUF1611_C)	P-loop	domain
NTPase_1	PF03266.15	gi|345004348|ref|YP_004807201.1|	-	0.058	13.3	0.0	0.11	12.5	0.0	1.4	1	0	0	1	1	1	0	NTPase
Pyr_redox_2	PF07992.14	gi|345004349|ref|YP_004807202.1|	-	1.2e-14	54.2	4.2	5.6e-11	42.2	0.1	2.0	1	1	1	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
DAO	PF01266.24	gi|345004349|ref|YP_004807202.1|	-	3.2e-12	46.7	0.3	1.9e-06	27.7	0.0	2.1	1	1	1	2	2	2	2	FAD	dependent	oxidoreductase
HI0933_like	PF03486.14	gi|345004349|ref|YP_004807202.1|	-	3.6e-09	35.8	0.1	6.3e-05	21.9	0.0	2.2	1	1	1	2	2	2	2	HI0933-like	protein
Pyr_redox_3	PF13738.6	gi|345004349|ref|YP_004807202.1|	-	4.3e-08	32.8	0.1	0.0058	15.9	0.0	2.2	1	1	1	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
GIDA	PF01134.22	gi|345004349|ref|YP_004807202.1|	-	7.2e-07	28.6	0.1	6.6e-05	22.2	0.0	2.1	1	1	1	2	2	2	2	Glucose	inhibited	division	protein	A
FAD_binding_2	PF00890.24	gi|345004349|ref|YP_004807202.1|	-	2.2e-06	27.1	0.5	2.8e-05	23.4	0.0	2.1	1	1	1	2	2	2	1	FAD	binding	domain
NAD_binding_8	PF13450.6	gi|345004349|ref|YP_004807202.1|	-	2.8e-06	27.5	0.2	4.4e-05	23.6	0.0	2.7	2	1	1	3	3	3	1	NAD(P)-binding	Rossmann-like	domain
FAD_binding_3	PF01494.19	gi|345004349|ref|YP_004807202.1|	-	4.5e-06	26.1	0.3	0.00023	20.5	0.0	2.1	2	0	0	2	2	2	1	FAD	binding	domain
NAD_binding_9	PF13454.6	gi|345004349|ref|YP_004807202.1|	-	8.4e-06	25.8	0.2	0.018	15.0	0.1	2.4	2	0	0	2	2	2	2	FAD-NAD(P)-binding
Thi4	PF01946.17	gi|345004349|ref|YP_004807202.1|	-	0.0001	21.7	0.0	0.00017	20.9	0.0	1.4	1	0	0	1	1	1	1	Thi4	family
FAD_oxidored	PF12831.7	gi|345004349|ref|YP_004807202.1|	-	0.00014	21.4	0.0	0.00026	20.5	0.0	1.5	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
K_oxygenase	PF13434.6	gi|345004349|ref|YP_004807202.1|	-	0.0024	17.1	0.1	0.68	9.0	0.0	2.1	2	0	0	2	2	2	2	L-lysine	6-monooxygenase	(NADPH-requiring)
Trp_halogenase	PF04820.14	gi|345004349|ref|YP_004807202.1|	-	0.0057	15.6	1.1	0.63	8.8	0.3	2.1	2	0	0	2	2	2	2	Tryptophan	halogenase
Lycopene_cycl	PF05834.12	gi|345004349|ref|YP_004807202.1|	-	0.0094	15.0	0.3	0.21	10.6	0.0	2.0	1	1	0	2	2	2	1	Lycopene	cyclase	protein
Pyr_redox	PF00070.27	gi|345004349|ref|YP_004807202.1|	-	0.014	15.9	0.1	0.032	14.8	0.0	1.6	2	0	0	2	2	1	0	Pyridine	nucleotide-disulphide	oxidoreductase
AlaDh_PNT_C	PF01262.21	gi|345004349|ref|YP_004807202.1|	-	0.042	13.1	0.0	0.062	12.6	0.0	1.5	1	0	0	1	1	1	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
Acetyltransf_2	PF00797.17	gi|345004350|ref|YP_004807203.1|	-	9.3e-26	91.1	0.0	1.2e-25	90.7	0.0	1.2	1	0	0	1	1	1	1	N-acetyltransferase
DUF2576	PF10845.8	gi|345004351|ref|YP_004807204.1|	-	0.051	13.2	0.3	0.055	13.1	0.3	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2576)
zf-C2H2_4	PF13894.6	gi|345004351|ref|YP_004807204.1|	-	0.12	13.2	0.9	0.21	12.5	0.9	1.4	1	0	0	1	1	1	0	C2H2-type	zinc	finger
Cons_hypoth698	PF03601.14	gi|345004352|ref|YP_004807205.1|	-	2.7e-62	210.4	21.9	3.4e-62	210.1	21.9	1.1	1	0	0	1	1	1	1	Conserved	hypothetical	protein	698
adh_short_C2	PF13561.6	gi|345004353|ref|YP_004807206.1|	-	2.8e-45	154.7	0.0	4.4e-45	154.0	0.0	1.2	1	1	0	1	1	1	1	Enoyl-(Acyl	carrier	protein)	reductase
adh_short	PF00106.25	gi|345004353|ref|YP_004807206.1|	-	6.5e-37	126.9	0.0	8.1e-37	126.6	0.0	1.0	1	0	0	1	1	1	1	short	chain	dehydrogenase
KR	PF08659.10	gi|345004353|ref|YP_004807206.1|	-	3.7e-09	36.7	0.1	5.5e-09	36.2	0.1	1.3	1	0	0	1	1	1	1	KR	domain
Adenine_deam_C	PF13382.6	gi|345004353|ref|YP_004807206.1|	-	0.035	13.5	0.8	0.075	12.4	0.8	1.5	1	0	0	1	1	1	0	Adenine	deaminase	C-terminal	domain
GARS_N	PF02844.15	gi|345004353|ref|YP_004807206.1|	-	0.047	14.5	0.2	1.5	9.6	0.0	2.2	2	0	0	2	2	2	0	Phosphoribosylglycinamide	synthetase,	N	domain
Glycos_transf_2	PF00535.26	gi|345004354|ref|YP_004807207.1|	-	1.3e-17	64.2	0.0	1.7e-17	63.8	0.0	1.2	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_tranf_2_3	PF13641.6	gi|345004354|ref|YP_004807207.1|	-	0.15	11.9	0.0	0.18	11.7	0.0	1.2	1	0	0	1	1	1	0	Glycosyltransferase	like	family	2
DDE_Tnp_1	PF01609.21	gi|345004354|ref|YP_004807207.1|	-	0.16	11.6	0.0	0.22	11.1	0.0	1.2	1	0	0	1	1	1	0	Transposase	DDE	domain
PMT_2	PF13231.6	gi|345004355|ref|YP_004807208.1|	-	2.5e-06	27.8	7.8	2.5e-06	27.8	7.8	2.3	2	0	0	2	2	2	1	Dolichyl-phosphate-mannose-protein	mannosyltransferase
Oleosin	PF01277.17	gi|345004355|ref|YP_004807208.1|	-	0.0093	15.7	0.3	0.059	13.1	0.3	2.4	1	0	0	1	1	1	1	Oleosin
ABC_tran	PF00005.27	gi|345004356|ref|YP_004807209.1|	-	7.5e-35	120.4	0.0	1.3e-34	119.7	0.0	1.4	1	0	0	1	1	1	1	ABC	transporter
TOBE_2	PF08402.10	gi|345004356|ref|YP_004807209.1|	-	7.2e-12	45.3	2.6	7.4e-12	45.3	0.5	2.3	2	0	0	2	2	2	1	TOBE	domain
AAA_21	PF13304.6	gi|345004356|ref|YP_004807209.1|	-	2.7e-06	27.4	0.0	0.0034	17.2	0.0	2.2	2	0	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
Rad17	PF03215.15	gi|345004356|ref|YP_004807209.1|	-	0.00084	19.3	0.0	0.0013	18.7	0.0	1.2	1	0	0	1	1	1	1	Rad17	P-loop	domain
AAA	PF00004.29	gi|345004356|ref|YP_004807209.1|	-	0.006	17.0	0.0	0.091	13.2	0.0	2.2	2	0	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_22	PF13401.6	gi|345004356|ref|YP_004807209.1|	-	0.0062	16.8	0.1	0.016	15.5	0.1	1.7	1	1	0	1	1	1	1	AAA	domain
AAA_16	PF13191.6	gi|345004356|ref|YP_004807209.1|	-	0.0067	16.8	0.2	0.014	15.8	0.1	1.7	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_30	PF13604.6	gi|345004356|ref|YP_004807209.1|	-	0.067	12.9	0.1	0.16	11.7	0.1	1.7	1	1	0	1	1	1	0	AAA	domain
SbcCD_C	PF13558.6	gi|345004356|ref|YP_004807209.1|	-	0.074	13.3	0.2	0.67	10.2	0.2	2.2	1	1	0	1	1	1	0	Putative	exonuclease	SbcCD,	C	subunit
BPD_transp_1	PF00528.22	gi|345004357|ref|YP_004807210.1|	-	2e-22	79.8	24.8	3e-14	53.2	5.8	3.3	2	1	1	3	3	3	2	Binding-protein-dependent	transport	system	inner	membrane	component
SBP_bac_6	PF13343.6	gi|345004358|ref|YP_004807211.1|	-	1.4e-16	60.7	0.0	1.7e-16	60.4	0.0	1.1	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_11	PF13531.6	gi|345004358|ref|YP_004807211.1|	-	3.6e-08	33.4	3.5	6.3e-08	32.7	3.5	1.4	1	1	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_1	PF01547.25	gi|345004358|ref|YP_004807211.1|	-	2.3e-07	31.1	2.6	2.3e-06	27.8	2.6	2.0	1	1	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_8	PF13416.6	gi|345004358|ref|YP_004807211.1|	-	1.2e-05	25.3	1.7	3.2e-05	23.9	1.7	1.6	1	1	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
TAT_signal	PF10518.9	gi|345004358|ref|YP_004807211.1|	-	0.0083	15.9	1.8	0.0083	15.9	1.8	3.2	3	0	0	3	3	3	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
RGP	PF03214.13	gi|345004359|ref|YP_004807212.1|	-	8.8e-15	54.7	0.0	1.2e-14	54.3	0.0	1.2	1	0	0	1	1	1	1	Reversibly	glycosylated	polypeptide
NIF3	PF01784.18	gi|345004359|ref|YP_004807212.1|	-	0.083	12.5	0.0	0.13	11.9	0.0	1.2	1	0	0	1	1	1	0	NIF3	(NGG1p	interacting	factor	3)
GMC_oxred_C	PF05199.13	gi|345004360|ref|YP_004807213.1|	-	4.5e-20	72.6	1.3	1.9e-19	70.6	1.3	2.1	1	1	0	1	1	1	1	GMC	oxidoreductase
GMC_oxred_N	PF00732.19	gi|345004360|ref|YP_004807213.1|	-	2.6e-14	53.3	0.0	4.1e-14	52.7	0.0	1.4	1	0	0	1	1	1	1	GMC	oxidoreductase
DAO	PF01266.24	gi|345004360|ref|YP_004807213.1|	-	4.5e-10	39.7	0.0	0.00031	20.4	0.0	2.4	2	0	0	2	2	2	2	FAD	dependent	oxidoreductase
FAD_binding_2	PF00890.24	gi|345004360|ref|YP_004807213.1|	-	6.6e-08	32.0	3.3	0.0031	16.7	1.2	2.2	2	0	0	2	2	2	2	FAD	binding	domain
Pyr_redox_2	PF07992.14	gi|345004360|ref|YP_004807213.1|	-	1e-06	28.2	0.0	0.00031	20.1	0.0	2.4	2	0	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_binding_3	PF01494.19	gi|345004360|ref|YP_004807213.1|	-	3.9e-06	26.3	1.6	5.6e-05	22.6	0.1	2.1	2	0	0	2	2	2	1	FAD	binding	domain
NAD_binding_8	PF13450.6	gi|345004360|ref|YP_004807213.1|	-	3.9e-06	27.0	0.3	1.3e-05	25.3	0.2	2.0	2	0	0	2	2	1	1	NAD(P)-binding	Rossmann-like	domain
HI0933_like	PF03486.14	gi|345004360|ref|YP_004807213.1|	-	7.6e-06	24.9	0.5	0.00027	19.8	0.4	2.1	2	0	0	2	2	2	1	HI0933-like	protein
Lycopene_cycl	PF05834.12	gi|345004360|ref|YP_004807213.1|	-	0.00012	21.3	0.2	0.00018	20.7	0.2	1.2	1	0	0	1	1	1	1	Lycopene	cyclase	protein
ApbA	PF02558.16	gi|345004360|ref|YP_004807213.1|	-	0.00081	19.1	0.3	0.0018	18.0	0.0	1.7	2	0	0	2	2	2	1	Ketopantoate	reductase	PanE/ApbA
Pyr_redox	PF00070.27	gi|345004360|ref|YP_004807213.1|	-	0.0012	19.4	0.0	0.072	13.7	0.0	2.5	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_3	PF13738.6	gi|345004360|ref|YP_004807213.1|	-	0.0058	15.9	0.0	0.056	12.7	0.0	2.0	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
Fer4_7	PF12838.7	gi|345004360|ref|YP_004807213.1|	-	0.02	15.4	2.1	0.056	14.1	2.1	1.8	1	0	0	1	1	1	0	4Fe-4S	dicluster	domain
UDPG_MGDP_dh_N	PF03721.14	gi|345004360|ref|YP_004807213.1|	-	0.026	14.1	0.2	0.039	13.5	0.2	1.2	1	0	0	1	1	1	0	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
GIDA	PF01134.22	gi|345004360|ref|YP_004807213.1|	-	0.026	13.6	0.3	0.17	11.0	0.2	2.1	2	0	0	2	2	2	0	Glucose	inhibited	division	protein	A
TrkA_N	PF02254.18	gi|345004360|ref|YP_004807213.1|	-	0.059	13.6	0.0	0.3	11.4	0.0	2.2	3	0	0	3	3	1	0	TrkA-N	domain
3HCDH_N	PF02737.18	gi|345004360|ref|YP_004807213.1|	-	0.097	12.5	0.0	0.15	11.9	0.0	1.3	1	0	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
K_oxygenase	PF13434.6	gi|345004360|ref|YP_004807213.1|	-	0.11	11.7	0.1	14	4.7	0.1	2.3	2	0	0	2	2	2	0	L-lysine	6-monooxygenase	(NADPH-requiring)
Thi4	PF01946.17	gi|345004360|ref|YP_004807213.1|	-	0.11	11.7	0.0	0.21	10.8	0.0	1.4	1	0	0	1	1	1	0	Thi4	family
Shikimate_DH	PF01488.20	gi|345004360|ref|YP_004807213.1|	-	0.15	12.1	0.0	0.29	11.2	0.0	1.4	1	0	0	1	1	1	0	Shikimate	/	quinate	5-dehydrogenase
Fer4_17	PF13534.6	gi|345004360|ref|YP_004807213.1|	-	0.17	12.4	0.1	0.36	11.4	0.1	1.5	1	0	0	1	1	1	0	4Fe-4S	dicluster	domain
NAD_binding_9	PF13454.6	gi|345004360|ref|YP_004807213.1|	-	0.36	10.8	1.4	1.7	8.6	0.0	2.2	2	0	0	2	2	2	0	FAD-NAD(P)-binding
Fer4	PF00037.27	gi|345004360|ref|YP_004807213.1|	-	0.41	10.5	3.0	0.36	10.7	1.2	1.9	2	0	0	2	2	1	0	4Fe-4S	binding	domain
FAD_oxidored	PF12831.7	gi|345004360|ref|YP_004807213.1|	-	0.51	9.6	2.5	1	8.7	2.5	1.5	1	0	0	1	1	1	0	FAD	dependent	oxidoreductase
Gluconate_2-dh3	PF13618.6	gi|345004361|ref|YP_004807214.1|	-	9.7e-07	29.1	0.0	1.4e-06	28.6	0.0	1.2	1	0	0	1	1	1	1	Gluconate	2-dehydrogenase	subunit	3
Thioredoxin_4	PF13462.6	gi|345004363|ref|YP_004807216.1|	-	4e-23	82.4	0.0	4.9e-23	82.1	0.0	1.1	1	0	0	1	1	1	1	Thioredoxin
Thioredoxin_2	PF13098.6	gi|345004363|ref|YP_004807216.1|	-	3.1e-09	37.2	0.0	1.2e-07	32.1	0.0	2.1	1	1	0	1	1	1	1	Thioredoxin-like	domain
Thioredoxin_5	PF13743.6	gi|345004363|ref|YP_004807216.1|	-	9.9e-07	28.6	0.5	1.5e-05	24.7	0.2	2.0	2	0	0	2	2	2	1	Thioredoxin
DSBA	PF01323.20	gi|345004363|ref|YP_004807216.1|	-	0.0002	21.2	1.0	0.0007	19.4	0.3	1.9	1	1	1	2	2	2	1	DSBA-like	thioredoxin	domain
Thioredoxin	PF00085.20	gi|345004363|ref|YP_004807216.1|	-	0.01	15.8	0.0	0.065	13.2	0.0	2.0	2	0	0	2	2	2	0	Thioredoxin
FAA_hydrolase	PF01557.18	gi|345004364|ref|YP_004807217.1|	-	9.9e-52	175.7	0.0	1.2e-51	175.4	0.0	1.1	1	0	0	1	1	1	1	Fumarylacetoacetate	(FAA)	hydrolase	family
MFS_1	PF07690.16	gi|345004365|ref|YP_004807218.1|	-	1.7e-38	132.5	74.4	7.2e-34	117.3	41.2	2.0	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
OATP	PF03137.20	gi|345004365|ref|YP_004807218.1|	-	0.11	10.8	4.8	0.13	10.6	0.0	2.6	1	1	2	3	3	3	0	Organic	Anion	Transporter	Polypeptide	(OATP)	family
Sugar_tr	PF00083.24	gi|345004365|ref|YP_004807218.1|	-	1.2	7.9	23.2	0.016	14.1	2.3	2.4	2	1	0	2	2	2	0	Sugar	(and	other)	transporter
MFS_1_like	PF12832.7	gi|345004365|ref|YP_004807218.1|	-	7.8	5.2	12.5	0.06	12.2	2.8	2.2	2	0	0	2	2	2	0	MFS_1	like	family
GFO_IDH_MocA	PF01408.22	gi|345004366|ref|YP_004807219.1|	-	3.4e-25	89.2	0.9	5.4e-25	88.6	0.9	1.3	1	0	0	1	1	1	1	Oxidoreductase	family,	NAD-binding	Rossmann	fold
F420_oxidored	PF03807.17	gi|345004366|ref|YP_004807219.1|	-	1.4e-07	32.0	0.1	2.9e-07	31.0	0.1	1.5	1	0	0	1	1	1	1	NADP	oxidoreductase	coenzyme	F420-dependent
Sacchrp_dh_NADP	PF03435.18	gi|345004366|ref|YP_004807219.1|	-	0.00029	21.1	0.4	0.00062	20.0	0.4	1.5	1	0	0	1	1	1	1	Saccharopine	dehydrogenase	NADP	binding	domain
Semialdhyde_dh	PF01118.24	gi|345004366|ref|YP_004807219.1|	-	0.0029	18.0	0.1	0.0066	16.9	0.1	1.6	1	0	0	1	1	1	1	Semialdehyde	dehydrogenase,	NAD	binding	domain
NAD_binding_3	PF03447.16	gi|345004366|ref|YP_004807219.1|	-	0.01	16.4	0.6	0.02	15.5	0.2	1.7	2	0	0	2	2	2	0	Homoserine	dehydrogenase,	NAD	binding	domain
NAD_binding_2	PF03446.15	gi|345004366|ref|YP_004807219.1|	-	0.02	15.1	0.1	0.031	14.4	0.1	1.3	1	0	0	1	1	1	0	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
CoA_binding	PF02629.19	gi|345004366|ref|YP_004807219.1|	-	0.046	14.4	0.7	0.15	12.8	0.1	2.1	2	0	0	2	2	2	0	CoA	binding	domain
G6PD_N	PF00479.22	gi|345004366|ref|YP_004807219.1|	-	0.063	13.9	0.0	0.11	13.2	0.0	1.3	1	0	0	1	1	1	0	Glucose-6-phosphate	dehydrogenase,	NAD	binding	domain
CoA_binding_2	PF13380.6	gi|345004366|ref|YP_004807219.1|	-	0.11	13.0	1.0	0.21	12.1	0.4	1.8	2	0	0	2	2	2	0	CoA	binding	domain
DUF2427	PF10348.9	gi|345004367|ref|YP_004807220.1|	-	0.04	13.7	0.7	0.047	13.5	0.7	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF2427)
zf-ribbon_3	PF13248.6	gi|345004368|ref|YP_004807221.1|	-	2.9e-06	26.5	1.3	4.5e-06	25.9	1.3	1.3	1	0	0	1	1	1	1	zinc-ribbon	domain
zinc_ribbon_2	PF13240.6	gi|345004368|ref|YP_004807221.1|	-	2.7e-05	23.7	1.2	4.1e-05	23.1	1.2	1.3	1	0	0	1	1	1	1	zinc-ribbon	domain
TF_Zn_Ribbon	PF08271.12	gi|345004368|ref|YP_004807221.1|	-	9.7e-05	21.8	2.4	0.055	13.0	0.2	2.5	2	0	0	2	2	2	2	TFIIB	zinc-binding
DUF35_N	PF12172.8	gi|345004368|ref|YP_004807221.1|	-	0.0002	21.2	1.5	0.00034	20.4	1.5	1.3	1	0	0	1	1	1	1	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
DZR	PF12773.7	gi|345004368|ref|YP_004807221.1|	-	0.00074	19.5	0.2	0.001	19.0	0.2	1.2	1	0	0	1	1	1	1	Double	zinc	ribbon
HypA	PF01155.19	gi|345004368|ref|YP_004807221.1|	-	0.0011	19.0	0.2	0.0018	18.3	0.2	1.3	1	0	0	1	1	1	1	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
DUF3742	PF12553.8	gi|345004368|ref|YP_004807221.1|	-	0.0028	17.8	0.0	0.0041	17.2	0.0	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3742)
zinc_ribbon_15	PF17032.5	gi|345004368|ref|YP_004807221.1|	-	0.0036	18.0	0.6	0.0048	17.6	0.6	1.2	1	0	0	1	1	1	1	zinc-ribbon	family
UPF0547	PF10571.9	gi|345004368|ref|YP_004807221.1|	-	0.14	12.2	2.3	0.35	11.0	2.3	1.6	1	1	0	1	1	1	0	Uncharacterised	protein	family	UPF0547
RecR	PF02132.15	gi|345004368|ref|YP_004807221.1|	-	0.44	10.1	3.4	0.73	9.5	3.4	1.3	1	0	0	1	1	1	0	RecR	protein
YhfH	PF14149.6	gi|345004368|ref|YP_004807221.1|	-	0.53	10.3	2.1	2.1	8.4	1.6	2.0	1	1	1	2	2	2	0	YhfH-like	protein
zf-ACC	PF17848.1	gi|345004368|ref|YP_004807221.1|	-	2.6	8.2	6.0	68	3.7	0.0	3.1	2	1	0	2	2	2	0	Acetyl-coA	carboxylase	zinc	finger	domain
zf-RRN7	PF11781.8	gi|345004368|ref|YP_004807221.1|	-	3.8	7.3	7.1	3.6	7.3	0.6	2.2	1	1	1	2	2	2	0	Zinc-finger	of	RNA-polymerase	I-specific	TFIIB,	Rrn7
MFS_1	PF07690.16	gi|345004369|ref|YP_004807222.1|	-	1.4e-15	57.1	38.8	9.8e-15	54.3	26.8	2.1	1	1	0	2	2	2	2	Major	Facilitator	Superfamily
MFS_1_like	PF12832.7	gi|345004369|ref|YP_004807222.1|	-	0.00023	20.2	0.1	0.00023	20.2	0.1	2.6	3	0	0	3	3	3	1	MFS_1	like	family
MatE	PF01554.18	gi|345004371|ref|YP_004807224.1|	-	7.1e-46	155.8	31.6	9.7e-28	96.8	9.1	2.9	3	0	0	3	3	3	2	MatE
Polysacc_synt_C	PF14667.6	gi|345004371|ref|YP_004807224.1|	-	1.8e-09	37.8	8.5	1.8e-09	37.8	8.5	4.8	3	2	2	5	5	5	2	Polysaccharide	biosynthesis	C-terminal	domain
MurJ	PF03023.14	gi|345004371|ref|YP_004807224.1|	-	2.9e-09	36.1	13.3	5.3e-08	31.9	4.9	2.9	2	1	1	3	3	3	3	Lipid	II	flippase	MurJ
DUF3717	PF12512.8	gi|345004371|ref|YP_004807224.1|	-	0.071	13.0	1.1	0.51	10.3	0.1	2.3	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3717)
Peptidase_M50	PF02163.22	gi|345004372|ref|YP_004807225.1|	-	2.5e-16	59.7	8.2	6.1e-09	35.5	0.2	3.1	1	1	1	2	2	2	2	Peptidase	family	M50
CBS	PF00571.28	gi|345004372|ref|YP_004807225.1|	-	7.1e-14	52.0	1.1	1.9e-08	34.6	0.2	2.5	2	0	0	2	2	2	2	CBS	domain
Usp	PF00582.26	gi|345004373|ref|YP_004807226.1|	-	3.5e-29	102.1	1.9	4.2e-29	101.9	1.9	1.1	1	0	0	1	1	1	1	Universal	stress	protein	family
DUF2391	PF09622.10	gi|345004374|ref|YP_004807227.1|	-	0.00019	20.9	11.1	0.0037	16.6	11.2	2.3	1	1	0	1	1	1	1	Putative	integral	membrane	protein	(DUF2391)
HTH_Tnp_Tc5	PF03221.16	gi|345004375|ref|YP_004807228.1|	-	0.016	15.3	0.0	0.022	14.8	0.0	1.2	1	0	0	1	1	1	0	Tc5	transposase	DNA-binding	domain
Mac	PF12464.8	gi|345004375|ref|YP_004807228.1|	-	0.056	13.7	0.3	0.11	12.7	0.3	1.7	1	1	0	1	1	1	0	Maltose	acetyltransferase
DUF2238	PF09997.9	gi|345004376|ref|YP_004807229.1|	-	1.2e-05	25.1	3.4	0.00022	21.0	1.7	2.7	1	1	1	2	2	2	1	Predicted	membrane	protein	(DUF2238)
DUF1275	PF06912.11	gi|345004376|ref|YP_004807229.1|	-	0.066	13.1	6.9	0.61	10.0	2.1	2.1	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF1275)
Cortexin	PF11057.8	gi|345004376|ref|YP_004807229.1|	-	0.13	12.1	0.1	1.9	8.4	0.1	2.2	2	0	0	2	2	2	0	Cortexin	of	kidney
FtsX	PF02687.21	gi|345004377|ref|YP_004807230.1|	-	1.4	9.5	22.4	10	6.7	0.1	3.1	1	1	2	3	3	3	0	FtsX-like	permease	family
PhoLip_ATPase_C	PF16212.5	gi|345004377|ref|YP_004807230.1|	-	1.8	8.3	17.0	0.19	11.4	9.7	2.0	1	1	1	2	2	2	0	Phospholipid-translocating	P-type	ATPase	C-terminal
DUF373	PF04123.13	gi|345004377|ref|YP_004807230.1|	-	2.8	7.3	11.3	3.9	6.8	9.9	1.7	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF373)
Hydrolase	PF00702.26	gi|345004378|ref|YP_004807231.1|	-	3.3e-36	125.6	4.9	3.3e-36	125.6	4.9	2.4	2	1	0	2	2	2	1	haloacid	dehalogenase-like	hydrolase
E1-E2_ATPase	PF00122.20	gi|345004378|ref|YP_004807231.1|	-	5e-31	107.6	2.9	5e-31	107.6	2.9	2.7	3	0	0	3	3	3	1	E1-E2	ATPase
HMA	PF00403.26	gi|345004378|ref|YP_004807231.1|	-	3.4e-07	30.6	0.0	1.5e-06	28.5	0.0	2.2	1	0	0	1	1	1	1	Heavy-metal-associated	domain
Hydrolase_3	PF08282.12	gi|345004378|ref|YP_004807231.1|	-	0.004	16.9	0.1	0.01	15.6	0.2	1.5	2	0	0	2	2	2	1	haloacid	dehalogenase-like	hydrolase
HAD	PF12710.7	gi|345004378|ref|YP_004807231.1|	-	0.072	13.5	1.4	0.39	11.1	0.1	2.7	2	0	0	2	2	2	0	haloacid	dehalogenase-like	hydrolase
zf-FLZ	PF04570.14	gi|345004378|ref|YP_004807231.1|	-	1.6	8.2	4.6	3.9	7.0	4.6	1.6	1	1	0	1	1	1	0	zinc-finger	of	the	FCS-type,	C2-C2
DUF834	PF05754.14	gi|345004378|ref|YP_004807231.1|	-	3.4	7.8	9.8	0.12	12.4	0.9	3.2	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF834)
AAA_23	PF13476.6	gi|345004380|ref|YP_004807233.1|	-	8.8e-06	26.4	22.6	8.8e-06	26.4	22.6	4.6	1	1	0	2	2	1	1	AAA	domain
IFT57	PF10498.9	gi|345004380|ref|YP_004807233.1|	-	0.00035	19.6	24.0	0.0025	16.8	3.3	2.9	2	1	1	3	3	3	3	Intra-flagellar	transport	protein	57
Spc7	PF08317.11	gi|345004380|ref|YP_004807233.1|	-	0.0011	17.9	17.8	0.0011	17.9	17.8	4.2	2	2	2	4	4	4	3	Spc7	kinetochore	protein
APG6_N	PF17675.1	gi|345004380|ref|YP_004807233.1|	-	0.0017	18.9	26.8	0.0017	18.9	26.8	4.8	2	2	2	4	4	4	1	Apg6	coiled-coil	region
Baculo_PEP_C	PF04513.12	gi|345004380|ref|YP_004807233.1|	-	0.045	13.8	13.2	2.5	8.2	0.4	4.1	3	1	2	5	5	4	0	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
Fib_alpha	PF08702.10	gi|345004380|ref|YP_004807233.1|	-	0.07	13.3	21.0	0.16	12.1	0.2	3.9	3	1	1	4	4	4	0	Fibrinogen	alpha/beta	chain	family
FlaC_arch	PF05377.11	gi|345004380|ref|YP_004807233.1|	-	0.096	13.1	0.5	0.096	13.1	0.5	7.5	4	2	6	10	10	10	0	Flagella	accessory	protein	C	(FlaC)
GAS	PF13851.6	gi|345004380|ref|YP_004807233.1|	-	0.15	11.3	49.5	0.042	13.2	19.4	3.9	2	2	1	3	3	3	0	Growth-arrest	specific	micro-tubule	binding
RasGAP_C	PF03836.15	gi|345004380|ref|YP_004807233.1|	-	0.17	12.0	26.5	0.71	10.0	4.2	5.3	3	2	1	4	4	4	0	RasGAP	C-terminus
NPV_P10	PF05531.12	gi|345004380|ref|YP_004807233.1|	-	0.44	11.1	17.4	17	5.9	0.5	5.8	3	2	2	5	5	5	0	Nucleopolyhedrovirus	P10	protein
Prefoldin_2	PF01920.20	gi|345004380|ref|YP_004807233.1|	-	0.92	9.5	46.9	0.79	9.7	0.5	8.3	4	3	2	6	6	6	0	Prefoldin	subunit
DUF724	PF05266.14	gi|345004380|ref|YP_004807233.1|	-	1	9.1	33.6	0.29	10.9	6.6	4.3	3	1	1	4	4	4	0	Protein	of	unknown	function	(DUF724)
BLOC1_2	PF10046.9	gi|345004380|ref|YP_004807233.1|	-	1.1	9.7	27.9	0.12	12.7	3.9	5.4	4	2	1	5	5	5	0	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
FapA	PF03961.13	gi|345004380|ref|YP_004807233.1|	-	1.7	7.2	32.6	0.54	8.8	3.2	4.1	1	1	2	4	4	4	0	Flagellar	Assembly	Protein	A
Filament	PF00038.21	gi|345004380|ref|YP_004807233.1|	-	2	7.9	56.2	0.18	11.3	23.4	3.4	2	1	1	3	3	3	0	Intermediate	filament	protein
DUF1664	PF07889.12	gi|345004380|ref|YP_004807233.1|	-	3.6	7.6	25.9	3	7.9	1.2	4.8	2	2	1	4	4	4	0	Protein	of	unknown	function	(DUF1664)
AAA_15	PF13175.6	gi|345004380|ref|YP_004807233.1|	-	5.3	6.6	8.4	22	4.6	0.0	3.3	3	1	0	3	3	3	0	AAA	ATPase	domain
Atg14	PF10186.9	gi|345004380|ref|YP_004807233.1|	-	7.1	5.6	39.4	6.2e+02	-0.8	19.4	3.8	1	1	1	2	2	2	0	Vacuolar	sorting	38	and	autophagy-related	subunit	14
DUF3450	PF11932.8	gi|345004380|ref|YP_004807233.1|	-	8.9	5.5	48.9	0.37	10.1	8.7	5.3	4	2	2	6	6	6	0	Protein	of	unknown	function	(DUF3450)
Seryl_tRNA_N	PF02403.22	gi|345004380|ref|YP_004807233.1|	-	9	6.6	47.8	0.34	11.2	7.1	5.2	2	2	2	4	4	4	0	Seryl-tRNA	synthetase	N-terminal	domain
IclR	PF01614.18	gi|345004381|ref|YP_004807234.1|	-	1.2e-35	122.2	0.1	7e-35	119.7	0.0	2.1	3	0	0	3	3	3	1	Bacterial	transcriptional	regulator
HTH_IclR	PF09339.10	gi|345004381|ref|YP_004807234.1|	-	9.7e-14	50.9	0.8	9.7e-14	50.9	0.8	1.7	2	0	0	2	2	1	1	IclR	helix-turn-helix	domain
MarR_2	PF12802.7	gi|345004381|ref|YP_004807234.1|	-	1.6e-07	31.1	0.7	4.4e-07	29.7	0.3	1.9	2	0	0	2	2	2	1	MarR	family
HTH_20	PF12840.7	gi|345004381|ref|YP_004807234.1|	-	1.2e-06	28.5	0.3	3.8e-06	26.9	0.3	1.8	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_24	PF13412.6	gi|345004381|ref|YP_004807234.1|	-	1e-05	25.0	0.0	1.8e-05	24.2	0.0	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_5	PF01022.20	gi|345004381|ref|YP_004807234.1|	-	1.1e-05	25.2	0.0	2e-05	24.4	0.0	1.4	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
MarR	PF01047.22	gi|345004381|ref|YP_004807234.1|	-	1.7e-05	24.7	0.0	3.5e-05	23.6	0.0	1.5	1	0	0	1	1	1	1	MarR	family
HTH_DeoR	PF08220.12	gi|345004381|ref|YP_004807234.1|	-	0.0002	21.0	0.1	0.00047	19.9	0.1	1.6	1	0	0	1	1	1	1	DeoR-like	helix-turn-helix	domain
TrmB	PF01978.19	gi|345004381|ref|YP_004807234.1|	-	0.00032	20.5	0.0	0.0013	18.6	0.0	1.9	2	0	0	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_27	PF13463.6	gi|345004381|ref|YP_004807234.1|	-	0.00064	20.2	0.1	0.0038	17.7	0.0	2.2	2	0	0	2	2	2	1	Winged	helix	DNA-binding	domain
Fe_dep_repress	PF01325.19	gi|345004381|ref|YP_004807234.1|	-	0.001	19.2	0.1	0.0055	16.9	0.0	2.1	3	0	0	3	3	2	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_10	PF04967.12	gi|345004381|ref|YP_004807234.1|	-	0.0011	18.8	0.1	0.0029	17.4	0.1	1.8	1	0	0	1	1	1	1	HTH	DNA	binding	domain
HTH_11	PF08279.12	gi|345004381|ref|YP_004807234.1|	-	0.0013	18.6	0.0	0.0053	16.7	0.0	2.0	2	0	0	2	2	2	1	HTH	domain
HTH_34	PF13601.6	gi|345004381|ref|YP_004807234.1|	-	0.0039	17.4	0.0	0.0086	16.2	0.0	1.5	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
LexA_DNA_bind	PF01726.16	gi|345004381|ref|YP_004807234.1|	-	0.0043	16.8	0.0	0.011	15.5	0.0	1.7	1	0	0	1	1	1	1	LexA	DNA	binding	domain
DUF977	PF06163.11	gi|345004381|ref|YP_004807234.1|	-	0.006	16.5	0.0	0.0096	15.9	0.0	1.4	1	0	0	1	1	1	1	Bacterial	protein	of	unknown	function	(DUF977)
AbiEi_4	PF13338.6	gi|345004381|ref|YP_004807234.1|	-	0.033	14.3	2.6	0.04	14.1	0.2	2.4	3	0	0	3	3	3	0	Transcriptional	regulator,	AbiEi	antitoxin
HTH_36	PF13730.6	gi|345004381|ref|YP_004807234.1|	-	0.073	13.0	0.0	0.17	11.9	0.0	1.6	1	0	0	1	1	1	0	Helix-turn-helix	domain
SpoIIID	PF12116.8	gi|345004381|ref|YP_004807234.1|	-	0.074	13.2	0.1	0.16	12.1	0.1	1.5	1	0	0	1	1	1	0	Stage	III	sporulation	protein	D
DUF1803	PF08820.10	gi|345004381|ref|YP_004807234.1|	-	0.1	12.6	0.0	0.23	11.5	0.0	1.5	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF1803)
Cyclase	PF04199.13	gi|345004382|ref|YP_004807235.1|	-	1.1e-28	100.2	1.5	2.5e-28	99.0	0.7	1.7	2	0	0	2	2	2	1	Putative	cyclase
XdhC_C	PF13478.6	gi|345004383|ref|YP_004807236.1|	-	1.6e-29	102.9	0.0	3.6e-29	101.8	0.0	1.6	2	0	0	2	2	2	1	XdhC	Rossmann	domain
XdhC_CoxI	PF02625.16	gi|345004383|ref|YP_004807236.1|	-	3.2e-19	68.9	10.7	5.5e-16	58.5	5.2	2.7	2	1	0	2	2	2	2	XdhC	and	CoxI	family
Fer2_2	PF01799.20	gi|345004384|ref|YP_004807237.1|	-	1.5e-28	98.6	0.1	1.5e-28	98.6	0.1	1.5	2	0	0	2	2	2	1	[2Fe-2S]	binding	domain
Fer2	PF00111.27	gi|345004384|ref|YP_004807237.1|	-	5.4e-08	32.7	1.9	9.9e-08	31.8	0.7	2.0	2	1	0	2	2	2	1	2Fe-2S	iron-sulfur	cluster	binding	domain
Fer2_3	PF13085.6	gi|345004384|ref|YP_004807237.1|	-	0.00016	21.6	0.1	0.00031	20.7	0.1	1.4	1	0	0	1	1	1	1	2Fe-2S	iron-sulfur	cluster	binding	domain
Ald_Xan_dh_C2	PF02738.18	gi|345004385|ref|YP_004807238.1|	-	3.4e-144	481.3	0.0	4.1e-144	481.1	0.0	1.1	1	0	0	1	1	1	1	Molybdopterin-binding	domain	of	aldehyde	dehydrogenase
Ald_Xan_dh_C	PF01315.22	gi|345004385|ref|YP_004807238.1|	-	6.5e-22	78.0	0.0	1.5e-21	76.8	0.0	1.7	1	0	0	1	1	1	1	Aldehyde	oxidase	and	xanthine	dehydrogenase,	a/b	hammerhead	domain
COXG	PF06240.13	gi|345004386|ref|YP_004807239.1|	-	4.4e-25	88.1	0.0	5.3e-25	87.8	0.0	1.1	1	0	0	1	1	1	1	Carbon	monoxide	dehydrogenase	subunit	G	(CoxG)
Polyketide_cyc2	PF10604.9	gi|345004386|ref|YP_004807239.1|	-	2.7e-10	40.7	0.6	3.3e-10	40.4	0.6	1.1	1	0	0	1	1	1	1	Polyketide	cyclase	/	dehydrase	and	lipid	transport
Polyketide_cyc	PF03364.20	gi|345004386|ref|YP_004807239.1|	-	1.6e-06	28.4	0.0	2.5e-06	27.7	0.0	1.3	1	1	0	1	1	1	1	Polyketide	cyclase	/	dehydrase	and	lipid	transport
AHSA1	PF08327.11	gi|345004386|ref|YP_004807239.1|	-	6.8e-05	23.1	0.1	0.00011	22.5	0.1	1.4	1	1	0	1	1	1	1	Activator	of	Hsp90	ATPase	homolog	1-like	protein
FAD_binding_5	PF00941.21	gi|345004387|ref|YP_004807240.1|	-	1.5e-45	155.0	0.0	2.5e-45	154.3	0.0	1.3	1	0	0	1	1	1	1	FAD	binding	domain	in	molybdopterin	dehydrogenase
CO_deh_flav_C	PF03450.17	gi|345004387|ref|YP_004807240.1|	-	4.8e-15	55.6	3.2	5.7e-15	55.3	2.0	1.8	2	0	0	2	2	2	1	CO	dehydrogenase	flavoprotein	C-terminal	domain
Peptidase_S15	PF02129.18	gi|345004388|ref|YP_004807241.1|	-	1.8e-48	165.5	0.5	2.4e-48	165.1	0.5	1.1	1	0	0	1	1	1	1	X-Pro	dipeptidyl-peptidase	(S15	family)
PepX_C	PF08530.10	gi|345004388|ref|YP_004807241.1|	-	2.7e-40	138.7	0.4	8.6e-40	137.1	0.4	1.8	1	1	0	1	1	1	1	X-Pro	dipeptidyl-peptidase	C-terminal	non-catalytic	domain
Peptidase_S9	PF00326.21	gi|345004388|ref|YP_004807241.1|	-	9.1e-06	25.3	1.3	2e-05	24.1	1.3	1.5	1	0	0	1	1	1	1	Prolyl	oligopeptidase	family
Hydrolase_4	PF12146.8	gi|345004388|ref|YP_004807241.1|	-	0.072	12.3	0.2	0.13	11.5	0.2	1.3	1	0	0	1	1	1	0	Serine	aminopeptidase,	S33
Xan_ur_permease	PF00860.20	gi|345004389|ref|YP_004807242.1|	-	5.4e-80	269.0	36.2	5.4e-80	269.0	36.2	1.4	1	1	0	1	1	1	1	Permease	family
Amidohydro_1	PF01979.20	gi|345004391|ref|YP_004807244.1|	-	7.8e-21	74.8	0.0	1.2e-20	74.2	0.0	1.3	1	0	0	1	1	1	1	Amidohydrolase	family
Amidohydro_3	PF07969.11	gi|345004391|ref|YP_004807244.1|	-	2.4e-15	57.0	1.1	1.4e-07	31.3	0.0	2.6	2	1	0	2	2	2	2	Amidohydrolase	family
HTH_AsnC-type	PF13404.6	gi|345004392|ref|YP_004807245.1|	-	3.9e-08	33.0	0.1	9.4e-08	31.8	0.1	1.7	1	1	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
HTH_24	PF13412.6	gi|345004392|ref|YP_004807245.1|	-	3.1e-06	26.6	0.1	8.5e-06	25.2	0.1	1.8	1	1	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_12	PF08461.10	gi|345004392|ref|YP_004807245.1|	-	0.00043	20.2	0.0	0.00075	19.4	0.0	1.4	1	0	0	1	1	1	1	Ribonuclease	R	winged-helix	domain
HTH_Tnp_Tc3_2	PF01498.18	gi|345004392|ref|YP_004807245.1|	-	0.024	14.9	0.0	0.034	14.4	0.0	1.2	1	0	0	1	1	1	0	Transposase
HTH_32	PF13565.6	gi|345004392|ref|YP_004807245.1|	-	0.045	14.4	0.0	0.091	13.4	0.0	1.5	1	0	0	1	1	1	0	Homeodomain-like	domain
Myb_DNA-bind_4	PF13837.6	gi|345004392|ref|YP_004807245.1|	-	0.11	12.9	0.0	0.81	10.1	0.0	2.1	2	0	0	2	2	2	0	Myb/SANT-like	DNA-binding	domain
Peptidase_M19	PF01244.21	gi|345004394|ref|YP_004807247.1|	-	5.4e-59	199.9	0.1	7e-59	199.6	0.1	1.1	1	0	0	1	1	1	1	Membrane	dipeptidase	(Peptidase	family	M19)
Amidase	PF01425.21	gi|345004395|ref|YP_004807248.1|	-	8.7e-95	318.3	0.1	1.1e-94	318.0	0.1	1.0	1	0	0	1	1	1	1	Amidase
Abhydrolase_1	PF00561.20	gi|345004396|ref|YP_004807249.1|	-	1.8e-25	90.1	0.1	4.4e-24	85.5	0.1	2.1	1	1	0	1	1	1	1	alpha/beta	hydrolase	fold
Abhydrolase_6	PF12697.7	gi|345004396|ref|YP_004807249.1|	-	3.5e-16	60.5	0.6	4.8e-16	60.0	0.6	1.1	1	0	0	1	1	1	1	Alpha/beta	hydrolase	family
Hydrolase_4	PF12146.8	gi|345004396|ref|YP_004807249.1|	-	1.5e-13	50.6	0.2	1.8e-12	47.0	0.2	2.0	1	1	0	1	1	1	1	Serine	aminopeptidase,	S33
Peptidase_S9	PF00326.21	gi|345004396|ref|YP_004807249.1|	-	2.4e-05	23.9	0.0	0.034	13.6	0.0	2.3	2	0	0	2	2	2	2	Prolyl	oligopeptidase	family
Abhydrolase_4	PF08386.10	gi|345004396|ref|YP_004807249.1|	-	0.002	18.2	0.0	0.0037	17.4	0.0	1.4	1	0	0	1	1	1	1	TAP-like	protein
Abhydrolase_5	PF12695.7	gi|345004396|ref|YP_004807249.1|	-	0.07	12.9	0.0	7.8	6.2	0.0	2.2	2	0	0	2	2	2	0	Alpha/beta	hydrolase	family
Thioesterase	PF00975.20	gi|345004396|ref|YP_004807249.1|	-	0.088	12.9	0.0	0.12	12.5	0.0	1.2	1	0	0	1	1	1	0	Thioesterase	domain
Peptidase_S9	PF00326.21	gi|345004397|ref|YP_004807250.1|	-	5.8e-45	153.4	0.8	9e-45	152.8	0.4	1.5	1	1	0	1	1	1	1	Prolyl	oligopeptidase	family
DLH	PF01738.18	gi|345004397|ref|YP_004807250.1|	-	1.5e-14	54.0	0.8	7.5e-14	51.8	0.8	1.9	1	1	0	1	1	1	1	Dienelactone	hydrolase	family
PD40	PF07676.12	gi|345004397|ref|YP_004807250.1|	-	2.7e-12	46.3	8.9	9.4e-08	31.8	0.7	5.3	5	0	0	5	5	5	2	WD40-like	Beta	Propeller	Repeat
Hydrolase_4	PF12146.8	gi|345004397|ref|YP_004807250.1|	-	2.8e-10	39.9	2.0	9.1e-08	31.6	1.4	2.3	2	0	0	2	2	2	2	Serine	aminopeptidase,	S33
Abhydrolase_1	PF00561.20	gi|345004397|ref|YP_004807250.1|	-	1.4e-09	38.0	0.7	8.7e-08	32.1	0.4	2.3	2	1	0	2	2	2	1	alpha/beta	hydrolase	fold
DPPIV_N	PF00930.21	gi|345004397|ref|YP_004807250.1|	-	2.2e-08	33.2	0.0	0.0022	16.8	0.0	4.6	2	1	3	5	5	5	3	Dipeptidyl	peptidase	IV	(DPP	IV)	N-terminal	region
AXE1	PF05448.12	gi|345004397|ref|YP_004807250.1|	-	7e-07	28.2	0.6	1.1e-05	24.3	0.6	2.1	1	1	0	1	1	1	1	Acetyl	xylan	esterase	(AXE1)
Peptidase_S15	PF02129.18	gi|345004397|ref|YP_004807250.1|	-	3.7e-06	26.7	3.9	6e-05	22.8	5.2	1.9	1	1	1	2	2	2	1	X-Pro	dipeptidyl-peptidase	(S15	family)
BAAT_C	PF08840.11	gi|345004397|ref|YP_004807250.1|	-	0.0062	16.5	0.0	0.3	11.0	0.0	2.1	2	0	0	2	2	2	1	BAAT	/	Acyl-CoA	thioester	hydrolase	C	terminal
SBP_bac_5	PF00496.22	gi|345004398|ref|YP_004807251.1|	-	1.7e-39	135.8	6.0	5.4e-39	134.2	6.0	1.8	1	1	0	1	1	1	1	Bacterial	extracellular	solute-binding	proteins,	family	5	Middle
TAT_signal	PF10518.9	gi|345004398|ref|YP_004807251.1|	-	0.13	12.1	0.4	0.28	11.1	0.4	1.5	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
BPD_transp_1	PF00528.22	gi|345004399|ref|YP_004807252.1|	-	1.2e-33	116.5	16.7	1.2e-33	116.5	16.7	2.0	2	0	0	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
BPD_transp_1	PF00528.22	gi|345004400|ref|YP_004807253.1|	-	1.3e-23	83.7	15.4	1.5e-23	83.5	12.6	2.1	2	0	0	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
OppC_N	PF12911.7	gi|345004400|ref|YP_004807253.1|	-	1e-09	38.2	0.1	1e-09	38.2	0.1	2.6	3	0	0	3	3	3	1	N-terminal	TM	domain	of	oligopeptide	transport	permease	C
ABC_tran	PF00005.27	gi|345004401|ref|YP_004807254.1|	-	5.3e-60	201.9	0.0	2.4e-32	112.3	0.0	2.7	3	0	0	3	3	3	2	ABC	transporter
oligo_HPY	PF08352.12	gi|345004401|ref|YP_004807254.1|	-	1.4e-39	134.5	0.7	4.8e-20	71.9	0.1	2.6	2	0	0	2	2	2	2	Oligopeptide/dipeptide	transporter,	C-terminal	region
AAA_21	PF13304.6	gi|345004401|ref|YP_004807254.1|	-	7.7e-09	35.8	4.2	0.0029	17.5	0.0	4.2	3	1	1	4	4	4	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_22	PF13401.6	gi|345004401|ref|YP_004807254.1|	-	6.1e-08	33.0	2.5	0.014	15.6	0.1	4.0	3	2	0	3	3	3	2	AAA	domain
AAA_16	PF13191.6	gi|345004401|ref|YP_004807254.1|	-	1.2e-06	29.0	0.1	0.016	15.6	0.0	2.9	3	0	0	3	3	2	2	AAA	ATPase	domain
RsgA_GTPase	PF03193.16	gi|345004401|ref|YP_004807254.1|	-	6e-05	23.0	0.2	0.46	10.4	0.0	2.5	2	0	0	2	2	2	2	RsgA	GTPase
PRK	PF00485.18	gi|345004401|ref|YP_004807254.1|	-	0.00055	19.7	0.1	1.4	8.7	0.1	2.6	3	0	0	3	3	3	2	Phosphoribulokinase	/	Uridine	kinase	family
AAA_5	PF07728.14	gi|345004401|ref|YP_004807254.1|	-	0.00059	19.8	1.8	0.22	11.5	0.0	3.4	4	1	0	4	4	2	1	AAA	domain	(dynein-related	subfamily)
AAA_29	PF13555.6	gi|345004401|ref|YP_004807254.1|	-	0.00072	19.2	0.7	0.1	12.4	0.1	2.4	2	0	0	2	2	2	1	P-loop	containing	region	of	AAA	domain
RNA_helicase	PF00910.22	gi|345004401|ref|YP_004807254.1|	-	0.0011	19.3	0.0	1.2	9.6	0.0	2.5	2	0	0	2	2	2	2	RNA	helicase
AAA_23	PF13476.6	gi|345004401|ref|YP_004807254.1|	-	0.0024	18.4	0.4	0.59	10.6	0.1	2.3	2	0	0	2	2	2	1	AAA	domain
MMR_HSR1	PF01926.23	gi|345004401|ref|YP_004807254.1|	-	0.0024	17.9	0.1	1.6	8.8	0.0	3.2	3	0	0	3	3	3	1	50S	ribosome-binding	GTPase
AAA	PF00004.29	gi|345004401|ref|YP_004807254.1|	-	0.0048	17.3	0.0	0.5	10.8	0.0	2.9	3	0	0	3	3	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
ATP-synt_ab	PF00006.25	gi|345004401|ref|YP_004807254.1|	-	0.0065	16.1	0.1	2.6	7.6	0.0	2.3	2	0	0	2	2	2	1	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
AAA_24	PF13479.6	gi|345004401|ref|YP_004807254.1|	-	0.0076	16.0	0.0	2.8	7.6	0.0	2.3	2	0	0	2	2	2	1	AAA	domain
Mg_chelatase	PF01078.21	gi|345004401|ref|YP_004807254.1|	-	0.0086	15.5	0.0	4.3	6.7	0.0	2.7	3	0	0	3	3	3	1	Magnesium	chelatase,	subunit	ChlI
MobB	PF03205.14	gi|345004401|ref|YP_004807254.1|	-	0.011	15.7	0.1	1.5	8.7	0.0	2.5	2	0	0	2	2	2	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
NACHT	PF05729.12	gi|345004401|ref|YP_004807254.1|	-	0.017	15.0	1.3	2.1	8.2	0.1	2.5	2	0	0	2	2	2	0	NACHT	domain
AAA_25	PF13481.6	gi|345004401|ref|YP_004807254.1|	-	0.022	14.3	3.7	17	4.9	0.1	4.2	4	0	0	4	4	4	0	AAA	domain
AAA_33	PF13671.6	gi|345004401|ref|YP_004807254.1|	-	0.033	14.3	0.3	9.9	6.3	0.2	2.9	2	1	0	2	2	2	0	AAA	domain
NB-ARC	PF00931.22	gi|345004401|ref|YP_004807254.1|	-	0.048	12.8	0.4	1.6	7.8	0.1	2.4	2	0	0	2	2	2	0	NB-ARC	domain
AAA_7	PF12775.7	gi|345004401|ref|YP_004807254.1|	-	0.074	12.6	0.3	4.9	6.6	0.0	2.2	2	0	0	2	2	2	0	P-loop	containing	dynein	motor	region
Roc	PF08477.13	gi|345004401|ref|YP_004807254.1|	-	0.094	12.9	0.0	9.6	6.4	0.0	2.3	2	0	0	2	2	2	0	Ras	of	Complex,	Roc,	domain	of	DAPkinase
Sigma54_activat	PF00158.26	gi|345004401|ref|YP_004807254.1|	-	0.12	12.0	0.2	21	4.8	0.0	2.4	2	0	0	2	2	2	0	Sigma-54	interaction	domain
AAA_18	PF13238.6	gi|345004401|ref|YP_004807254.1|	-	0.18	12.3	0.2	30	5.1	0.0	2.8	3	0	0	3	3	2	0	AAA	domain
DUF3265	PF11665.8	gi|345004401|ref|YP_004807254.1|	-	2.4	8.4	3.8	15	5.9	0.2	2.4	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3265)
Phage_holin_3_6	PF07332.11	gi|345004402|ref|YP_004807255.1|	-	0.93	9.6	11.4	1	9.4	11.4	1.2	1	0	0	1	1	1	0	Putative	Actinobacterial	Holin-X,	holin	superfamily	III
Claudin_2	PF13903.6	gi|345004402|ref|YP_004807255.1|	-	1.9	8.2	6.7	2.2	8.0	6.7	1.1	1	0	0	1	1	1	0	PMP-22/EMP/MP20/Claudin	tight	junction
Amdase	PF17645.1	gi|345004403|ref|YP_004807256.1|	-	0.02	14.5	0.1	0.31	10.6	0.0	2.0	2	0	0	2	2	2	0	Arylmalonate	decarboxylase
Peptidase_M28	PF04389.17	gi|345004404|ref|YP_004807257.1|	-	3.5e-16	59.5	0.0	7e-16	58.5	0.0	1.5	1	0	0	1	1	1	1	Peptidase	family	M28
PA	PF02225.22	gi|345004404|ref|YP_004807257.1|	-	0.0068	16.4	0.1	0.014	15.4	0.1	1.6	1	0	0	1	1	1	1	PA	domain
Peptidase_M20	PF01546.28	gi|345004404|ref|YP_004807257.1|	-	0.046	13.4	0.0	0.078	12.7	0.0	1.4	1	0	0	1	1	1	0	Peptidase	family	M20/M25/M40
ADH_zinc_N	PF00107.26	gi|345004405|ref|YP_004807258.1|	-	1.1e-27	96.5	0.0	1.8e-27	95.9	0.0	1.3	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
ADH_zinc_N_2	PF13602.6	gi|345004405|ref|YP_004807258.1|	-	5.8e-21	75.9	0.1	1e-20	75.1	0.1	1.3	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
ADH_N	PF08240.12	gi|345004405|ref|YP_004807258.1|	-	6.1e-20	71.1	1.6	1.1e-19	70.3	1.6	1.4	1	0	0	1	1	1	1	Alcohol	dehydrogenase	GroES-like	domain
AlaDh_PNT_C	PF01262.21	gi|345004405|ref|YP_004807258.1|	-	0.0017	17.7	0.5	0.0024	17.2	0.5	1.2	1	0	0	1	1	1	1	Alanine	dehydrogenase/PNT,	C-terminal	domain
adh_short	PF00106.25	gi|345004405|ref|YP_004807258.1|	-	0.081	12.4	0.1	0.11	11.9	0.1	1.2	1	0	0	1	1	1	0	short	chain	dehydrogenase
DUF5067	PF16729.5	gi|345004406|ref|YP_004807259.1|	-	0.02	14.8	0.0	0.25	11.3	0.0	2.0	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF5067)
TraK	PF06586.11	gi|345004406|ref|YP_004807259.1|	-	0.046	13.4	1.1	0.06	13.0	1.1	1.1	1	0	0	1	1	1	0	TraK	protein
SSF	PF00474.17	gi|345004408|ref|YP_004807261.1|	-	1.7e-58	198.4	34.8	2.2e-58	198.1	34.8	1.1	1	0	0	1	1	1	1	Sodium:solute	symporter	family
Amidohydro_1	PF01979.20	gi|345004410|ref|YP_004807263.1|	-	1.6e-35	123.1	0.9	1.9e-35	122.8	0.9	1.1	1	0	0	1	1	1	1	Amidohydrolase	family
Amidohydro_3	PF07969.11	gi|345004410|ref|YP_004807263.1|	-	1.2e-12	48.1	13.2	1.4e-11	44.6	7.6	2.6	1	1	1	2	2	2	2	Amidohydrolase	family
CorA	PF01544.18	gi|345004411|ref|YP_004807264.1|	-	2.2e-74	250.4	0.2	2.6e-74	250.2	0.2	1.0	1	0	0	1	1	1	1	CorA-like	Mg2+	transporter	protein
PEP-CTERM	PF07589.11	gi|345004412|ref|YP_004807265.1|	-	8.6	6.6	7.5	13	6.0	3.8	2.2	2	0	0	2	2	2	0	PEP-CTERM	motif
Bac_luciferase	PF00296.20	gi|345004414|ref|YP_004807267.1|	-	1.7e-46	159.1	3.6	2.2e-46	158.7	3.6	1.1	1	0	0	1	1	1	1	Luciferase-like	monooxygenase
ASCH	PF04266.14	gi|345004415|ref|YP_004807268.1|	-	0.058	14.0	0.2	0.084	13.5	0.2	1.3	1	0	0	1	1	1	0	ASCH	domain
GramPos_pilinD1	PF16555.5	gi|345004415|ref|YP_004807268.1|	-	0.074	13.2	0.3	0.087	13.0	0.3	1.1	1	0	0	1	1	1	0	Gram-positive	pilin	subunit	D1,	N-terminal	domain
Amidohydro_3	PF07969.11	gi|345004416|ref|YP_004807269.1|	-	1.4e-35	123.7	3.0	1.9e-35	123.3	3.0	1.0	1	0	0	1	1	1	1	Amidohydrolase	family
DUF2207	PF09972.9	gi|345004418|ref|YP_004807271.1|	-	0.39	9.4	0.7	0.52	9.0	0.7	1.1	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2207)
Sulf_transp	PF04143.14	gi|345004418|ref|YP_004807271.1|	-	0.9	9.0	7.4	0.45	10.0	5.6	1.3	2	0	0	2	2	2	0	Sulphur	transport
DUF2975	PF11188.8	gi|345004418|ref|YP_004807271.1|	-	1.1	9.1	8.5	1.1	9.1	6.3	1.8	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2975)
ABC_tran	PF00005.27	gi|345004419|ref|YP_004807272.1|	-	7.8e-34	117.1	0.0	1.4e-33	116.3	0.0	1.4	1	0	0	1	1	1	1	ABC	transporter
oligo_HPY	PF08352.12	gi|345004419|ref|YP_004807272.1|	-	8.4e-17	61.5	0.4	1.8e-16	60.4	0.4	1.5	1	0	0	1	1	1	1	Oligopeptide/dipeptide	transporter,	C-terminal	region
AAA_22	PF13401.6	gi|345004419|ref|YP_004807272.1|	-	3.8e-05	24.0	1.4	0.00074	19.8	0.4	2.8	2	1	0	2	2	2	1	AAA	domain
AAA_21	PF13304.6	gi|345004419|ref|YP_004807272.1|	-	4.5e-05	23.4	0.2	0.026	14.4	0.1	2.3	1	1	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|345004419|ref|YP_004807272.1|	-	0.0025	17.3	0.0	0.0051	16.3	0.0	1.5	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
RsgA_GTPase	PF03193.16	gi|345004419|ref|YP_004807272.1|	-	0.02	14.8	0.1	0.034	14.1	0.1	1.3	1	0	0	1	1	1	0	RsgA	GTPase
AAA_16	PF13191.6	gi|345004419|ref|YP_004807272.1|	-	0.024	15.0	0.6	0.062	13.7	0.6	1.9	1	1	0	1	1	1	0	AAA	ATPase	domain
AAA_25	PF13481.6	gi|345004419|ref|YP_004807272.1|	-	0.026	14.1	0.2	7.4	6.1	0.1	2.7	2	0	0	2	2	2	0	AAA	domain
AAA	PF00004.29	gi|345004419|ref|YP_004807272.1|	-	0.028	14.9	0.0	0.079	13.4	0.0	1.9	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
ATP-synt_ab	PF00006.25	gi|345004419|ref|YP_004807272.1|	-	0.028	14.1	0.0	0.028	14.1	0.0	1.2	1	0	0	1	1	1	0	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
MMR_HSR1	PF01926.23	gi|345004419|ref|YP_004807272.1|	-	0.081	13.0	0.0	0.21	11.6	0.0	1.7	1	1	0	1	1	1	0	50S	ribosome-binding	GTPase
MobB	PF03205.14	gi|345004419|ref|YP_004807272.1|	-	0.16	11.9	0.1	0.31	10.9	0.1	1.5	1	0	0	1	1	1	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
AAA_13	PF13166.6	gi|345004419|ref|YP_004807272.1|	-	0.2	10.2	0.1	7.5	5.1	0.0	2.2	2	0	0	2	2	2	0	AAA	domain
AAA_29	PF13555.6	gi|345004419|ref|YP_004807272.1|	-	0.22	11.3	0.3	0.44	10.3	0.3	1.4	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
ABC_tran	PF00005.27	gi|345004420|ref|YP_004807273.1|	-	7.2e-28	97.8	0.0	1.1e-27	97.2	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
oligo_HPY	PF08352.12	gi|345004420|ref|YP_004807273.1|	-	8.4e-17	61.5	0.0	1.7e-16	60.5	0.0	1.5	1	0	0	1	1	1	1	Oligopeptide/dipeptide	transporter,	C-terminal	region
AAA_21	PF13304.6	gi|345004420|ref|YP_004807273.1|	-	3.3e-08	33.7	0.2	2.5e-06	27.5	0.1	2.1	1	1	1	2	2	2	1	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|345004420|ref|YP_004807273.1|	-	3.7e-06	26.5	0.0	5.3e-06	26.0	0.0	1.1	1	0	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA	PF00004.29	gi|345004420|ref|YP_004807273.1|	-	0.0089	16.5	0.1	0.074	13.5	0.0	2.1	2	0	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_22	PF13401.6	gi|345004420|ref|YP_004807273.1|	-	0.012	15.9	1.6	0.35	11.1	0.3	2.2	1	1	0	2	2	2	0	AAA	domain
DUF87	PF01935.17	gi|345004420|ref|YP_004807273.1|	-	0.056	13.5	0.2	0.13	12.3	0.2	1.6	1	0	0	1	1	1	0	Helicase	HerA,	central	domain
AAA_29	PF13555.6	gi|345004420|ref|YP_004807273.1|	-	0.075	12.8	0.1	0.14	12.0	0.1	1.3	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
Sigma54_activat	PF00158.26	gi|345004420|ref|YP_004807273.1|	-	0.078	12.7	0.3	0.64	9.7	0.0	2.0	2	0	0	2	2	2	0	Sigma-54	interaction	domain
AIG1	PF04548.16	gi|345004420|ref|YP_004807273.1|	-	0.098	12.0	0.1	0.16	11.3	0.1	1.3	1	0	0	1	1	1	0	AIG1	family
AAA_16	PF13191.6	gi|345004420|ref|YP_004807273.1|	-	0.16	12.3	0.5	0.27	11.6	0.5	1.6	1	1	0	1	1	1	0	AAA	ATPase	domain
BPD_transp_1	PF00528.22	gi|345004421|ref|YP_004807274.1|	-	8.1e-18	64.8	8.6	8.1e-18	64.8	8.6	2.6	3	0	0	3	3	3	1	Binding-protein-dependent	transport	system	inner	membrane	component
OppC_N	PF12911.7	gi|345004421|ref|YP_004807274.1|	-	0.004	17.1	0.0	0.004	17.1	0.0	4.2	4	1	0	4	4	4	1	N-terminal	TM	domain	of	oligopeptide	transport	permease	C
BPD_transp_1	PF00528.22	gi|345004422|ref|YP_004807275.1|	-	2.7e-34	118.5	11.7	2.7e-34	118.5	11.7	1.8	2	0	0	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
DUF3593	PF12159.8	gi|345004422|ref|YP_004807275.1|	-	0.66	10.0	3.8	1.4	9.0	0.0	2.4	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3593)
SBP_bac_5	PF00496.22	gi|345004423|ref|YP_004807276.1|	-	8.1e-56	189.6	0.8	1.1e-55	189.1	0.8	1.1	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	proteins,	family	5	Middle
TAT_signal	PF10518.9	gi|345004423|ref|YP_004807276.1|	-	6.5e-06	25.8	4.5	1.9e-05	24.3	4.5	1.8	1	0	0	1	1	1	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
UCR_Fe-S_N	PF10399.9	gi|345004423|ref|YP_004807276.1|	-	0.047	13.0	0.4	0.11	11.9	0.4	1.6	1	0	0	1	1	1	0	Ubiquitinol-cytochrome	C	reductase	Fe-S	subunit	TAT	signal
Phage_mat-A	PF03863.13	gi|345004423|ref|YP_004807276.1|	-	0.051	12.5	0.1	1.6	7.6	0.0	2.2	1	1	1	2	2	2	0	Phage	maturation	protein
Peptidase_S9	PF00326.21	gi|345004424|ref|YP_004807277.1|	-	9.1e-43	146.2	0.5	1.4e-42	145.6	0.5	1.2	1	0	0	1	1	1	1	Prolyl	oligopeptidase	family
PD40	PF07676.12	gi|345004424|ref|YP_004807277.1|	-	4.8e-10	39.1	7.4	3.2e-05	23.7	0.5	5.2	5	0	0	5	5	5	2	WD40-like	Beta	Propeller	Repeat
Peptidase_S15	PF02129.18	gi|345004424|ref|YP_004807277.1|	-	2.1e-09	37.4	1.6	5e-06	26.3	1.4	2.2	1	1	1	2	2	2	2	X-Pro	dipeptidyl-peptidase	(S15	family)
DLH	PF01738.18	gi|345004424|ref|YP_004807277.1|	-	9.2e-08	31.9	0.0	1.6e-07	31.1	0.0	1.3	1	0	0	1	1	1	1	Dienelactone	hydrolase	family
Hydrolase_4	PF12146.8	gi|345004424|ref|YP_004807277.1|	-	3e-05	23.4	0.2	0.02	14.1	0.0	2.2	2	0	0	2	2	2	2	Serine	aminopeptidase,	S33
AXE1	PF05448.12	gi|345004424|ref|YP_004807277.1|	-	0.00013	20.7	0.1	0.12	11.0	0.1	2.3	2	0	0	2	2	2	2	Acetyl	xylan	esterase	(AXE1)
Gmad1	PF10647.9	gi|345004424|ref|YP_004807277.1|	-	0.00021	21.1	5.7	0.092	12.5	1.5	3.1	3	1	0	3	3	3	2	Lipoprotein	LpqB	beta-propeller	domain
Peptidase_S9_N	PF02897.15	gi|345004424|ref|YP_004807277.1|	-	0.0046	15.8	0.0	0.24	10.2	0.0	2.3	2	0	0	2	2	2	1	Prolyl	oligopeptidase,	N-terminal	beta-propeller	domain
Esterase_phd	PF10503.9	gi|345004424|ref|YP_004807277.1|	-	0.0083	15.6	0.1	0.033	13.7	0.1	1.9	1	1	0	1	1	1	1	Esterase	PHB	depolymerase
FSH1	PF03959.13	gi|345004424|ref|YP_004807277.1|	-	0.039	13.6	0.0	0.074	12.7	0.0	1.4	1	0	0	1	1	1	0	Serine	hydrolase	(FSH1)
DPPIV_N	PF00930.21	gi|345004424|ref|YP_004807277.1|	-	0.068	11.9	0.1	6.1	5.5	0.0	3.6	2	1	1	4	4	4	0	Dipeptidyl	peptidase	IV	(DPP	IV)	N-terminal	region
WD40	PF00400.32	gi|345004424|ref|YP_004807277.1|	-	0.26	12.2	1.2	1.1e+02	4.0	0.0	4.8	4	2	1	5	5	5	0	WD	domain,	G-beta	repeat
AzlC	PF03591.14	gi|345004425|ref|YP_004807278.1|	-	3.2e-37	128.0	10.6	3.2e-37	128.0	10.6	1.8	2	0	0	2	2	2	1	AzlC	protein
Peptidase_M48_N	PF16491.5	gi|345004425|ref|YP_004807278.1|	-	0.19	11.6	1.4	0.28	11.0	0.4	1.7	2	0	0	2	2	2	0	CAAX	prenyl	protease	N-terminal,	five	membrane	helices
CPBP	PF02517.16	gi|345004425|ref|YP_004807278.1|	-	0.47	10.9	5.5	1.8	9.0	5.5	2.1	1	1	0	1	1	1	0	CPBP	intramembrane	metalloprotease
AzlD	PF05437.12	gi|345004426|ref|YP_004807279.1|	-	8.3e-21	74.0	14.5	9.6e-21	73.8	14.5	1.0	1	0	0	1	1	1	1	Branched-chain	amino	acid	transport	protein	(AzlD)
HTH_24	PF13412.6	gi|345004427|ref|YP_004807280.1|	-	9.4e-08	31.5	0.1	1.3e-07	31.1	0.1	1.2	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
MarR_2	PF12802.7	gi|345004427|ref|YP_004807280.1|	-	1.4e-06	28.0	0.2	1.8e-06	27.7	0.2	1.2	1	0	0	1	1	1	1	MarR	family
TrmB	PF01978.19	gi|345004427|ref|YP_004807280.1|	-	0.00042	20.1	0.1	0.00055	19.8	0.1	1.2	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
GntR	PF00392.21	gi|345004427|ref|YP_004807280.1|	-	0.00095	18.8	0.9	0.0013	18.3	0.9	1.2	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	gntR	family
TFIIE_alpha	PF02002.17	gi|345004427|ref|YP_004807280.1|	-	0.0021	17.9	0.0	0.0024	17.7	0.0	1.1	1	0	0	1	1	1	1	TFIIE	alpha	subunit
HTH_27	PF13463.6	gi|345004427|ref|YP_004807280.1|	-	0.005	17.3	0.1	0.0065	16.9	0.1	1.1	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
HTH_AsnC-type	PF13404.6	gi|345004427|ref|YP_004807280.1|	-	0.0051	16.6	0.3	0.008	16.0	0.3	1.3	1	0	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
HTH_Mga	PF08280.11	gi|345004427|ref|YP_004807280.1|	-	0.019	15.0	0.0	0.032	14.3	0.0	1.4	1	1	0	1	1	1	0	M	protein	trans-acting	positive	regulator	(MGA)	HTH	domain
HTH_11	PF08279.12	gi|345004427|ref|YP_004807280.1|	-	0.032	14.2	0.2	0.048	13.6	0.2	1.2	1	0	0	1	1	1	0	HTH	domain
Rrf2	PF02082.20	gi|345004427|ref|YP_004807280.1|	-	0.046	14.1	0.1	0.065	13.6	0.1	1.2	1	0	0	1	1	1	0	Transcriptional	regulator
Cupin_2	PF07883.11	gi|345004429|ref|YP_004807282.1|	-	8.3e-16	57.5	0.3	1.1e-15	57.1	0.3	1.2	1	0	0	1	1	1	1	Cupin	domain
CDO_I	PF05995.12	gi|345004429|ref|YP_004807282.1|	-	1.4e-05	24.5	0.0	0.00047	19.5	0.0	2.0	1	1	0	1	1	1	1	Cysteine	dioxygenase	type	I
AraC_binding	PF02311.19	gi|345004429|ref|YP_004807282.1|	-	3.7e-05	23.6	0.0	6.1e-05	22.9	0.0	1.3	1	0	0	1	1	1	1	AraC-like	ligand	binding	domain
PCO_ADO	PF07847.12	gi|345004429|ref|YP_004807282.1|	-	0.0013	18.2	0.0	0.0017	17.8	0.0	1.3	1	0	0	1	1	1	1	PCO_ADO
MannoseP_isomer	PF01050.18	gi|345004429|ref|YP_004807282.1|	-	0.03	14.2	0.0	0.034	14.1	0.0	1.1	1	0	0	1	1	1	0	Mannose-6-phosphate	isomerase
DUF3540	PF12059.8	gi|345004429|ref|YP_004807282.1|	-	0.042	13.7	0.0	0.054	13.3	0.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3540)
HutD	PF05962.11	gi|345004429|ref|YP_004807282.1|	-	0.071	13.1	0.0	0.089	12.7	0.0	1.1	1	0	0	1	1	1	0	HutD
Fer2	PF00111.27	gi|345004431|ref|YP_004807284.1|	-	1.1e-12	47.7	0.0	2.6e-12	46.5	0.0	1.7	1	0	0	1	1	1	1	2Fe-2S	iron-sulfur	cluster	binding	domain
DnaJ	PF00226.31	gi|345004431|ref|YP_004807284.1|	-	2.8e-09	37.0	0.0	5e-09	36.2	0.0	1.4	1	0	0	1	1	1	1	DnaJ	domain
Fer2_4	PF13510.6	gi|345004431|ref|YP_004807284.1|	-	0.026	14.6	0.5	0.17	12.0	0.5	2.1	1	1	0	1	1	1	0	2Fe-2S	iron-sulfur	cluster	binding	domain
RPT	PF13446.6	gi|345004431|ref|YP_004807284.1|	-	0.059	13.3	0.0	0.33	10.9	0.0	2.1	2	0	0	2	2	2	0	A	repeated	domain	in	UCH-protein
Amidohydro_3	PF07969.11	gi|345004432|ref|YP_004807285.1|	-	2e-88	298.0	4.2	2.4e-88	297.7	4.2	1.1	1	0	0	1	1	1	1	Amidohydrolase	family
Amidohydro_1	PF01979.20	gi|345004432|ref|YP_004807285.1|	-	7.6e-10	38.6	0.9	0.019	14.3	0.0	4.0	3	1	0	3	3	3	3	Amidohydrolase	family
Radical_SAM	PF04055.21	gi|345004432|ref|YP_004807285.1|	-	0.029	14.7	0.2	0.15	12.5	0.0	2.2	2	1	0	2	2	2	0	Radical	SAM	superfamily
Ferritin	PF00210.24	gi|345004433|ref|YP_004807286.1|	-	1.7e-27	96.1	3.4	2e-27	95.9	3.4	1.1	1	0	0	1	1	1	1	Ferritin-like	domain
GCN5L1	PF06320.13	gi|345004433|ref|YP_004807286.1|	-	0.088	13.0	1.0	0.31	11.2	0.2	2.1	2	1	0	2	2	2	0	GCN5-like	protein	1	(GCN5L1)
Fe_dep_repr_C	PF02742.15	gi|345004433|ref|YP_004807286.1|	-	0.55	10.4	4.0	0.75	9.9	1.1	2.6	3	0	0	3	3	3	0	Iron	dependent	repressor,	metal	binding	and	dimerisation	domain
NIF3	PF01784.18	gi|345004435|ref|YP_004807288.1|	-	6.2e-06	26.0	0.1	0.00043	20.0	0.0	2.1	2	0	0	2	2	2	2	NIF3	(NGG1p	interacting	factor	3)
Oxidored_FMN	PF00724.20	gi|345004436|ref|YP_004807289.1|	-	8.4e-63	212.7	0.0	9.7e-63	212.5	0.0	1.0	1	0	0	1	1	1	1	NADH:flavin	oxidoreductase	/	NADH	oxidase	family
Dus	PF01207.17	gi|345004436|ref|YP_004807289.1|	-	0.0013	17.9	0.0	0.0019	17.3	0.0	1.2	1	0	0	1	1	1	1	Dihydrouridine	synthase	(Dus)
Pyr_redox_2	PF07992.14	gi|345004437|ref|YP_004807290.1|	-	4.2e-53	180.5	2.0	5.9e-53	180.0	2.0	1.2	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_dim	PF02852.22	gi|345004437|ref|YP_004807290.1|	-	4.3e-24	84.9	0.1	7.5e-24	84.1	0.1	1.4	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase,	dimerisation	domain
Pyr_redox	PF00070.27	gi|345004437|ref|YP_004807290.1|	-	8e-19	68.0	0.7	6.5e-15	55.5	0.0	2.8	2	0	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_3	PF13738.6	gi|345004437|ref|YP_004807290.1|	-	2.4e-08	33.6	0.2	2.7e-06	26.9	0.0	2.5	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
K_oxygenase	PF13434.6	gi|345004437|ref|YP_004807290.1|	-	1.4e-06	27.7	0.2	3.5e-06	26.4	0.0	1.7	2	0	0	2	2	2	1	L-lysine	6-monooxygenase	(NADPH-requiring)
GIDA	PF01134.22	gi|345004437|ref|YP_004807290.1|	-	0.00063	18.9	0.1	0.0011	18.1	0.1	1.4	1	0	0	1	1	1	1	Glucose	inhibited	division	protein	A
NAD_binding_7	PF13241.6	gi|345004437|ref|YP_004807290.1|	-	0.00097	19.5	0.1	0.018	15.5	0.0	2.4	2	0	0	2	2	2	1	Putative	NAD(P)-binding
3HCDH_N	PF02737.18	gi|345004437|ref|YP_004807290.1|	-	0.0022	17.9	0.2	0.067	13.1	0.0	2.4	2	0	0	2	2	2	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
FAD_binding_2	PF00890.24	gi|345004437|ref|YP_004807290.1|	-	0.0054	15.9	3.3	0.01	14.9	0.7	2.4	2	0	0	2	2	2	1	FAD	binding	domain
XdhC_C	PF13478.6	gi|345004437|ref|YP_004807290.1|	-	0.026	15.0	0.1	0.077	13.5	0.0	1.8	2	0	0	2	2	2	0	XdhC	Rossmann	domain
MDMPI_C	PF07398.11	gi|345004437|ref|YP_004807290.1|	-	6.1	7.8	9.4	1.1	10.2	3.9	2.6	2	1	0	2	2	2	0	MDMPI	C-terminal	domain
DrsE	PF02635.15	gi|345004438|ref|YP_004807291.1|	-	1.6e-06	28.5	0.0	1.8e-06	28.3	0.0	1.1	1	0	0	1	1	1	1	DsrE/DsrF-like	family
ALIX_LYPXL_bnd	PF13949.6	gi|345004439|ref|YP_004807292.1|	-	0.043	13.1	0.0	0.21	10.9	0.0	1.8	2	0	0	2	2	2	0	ALIX	V-shaped	domain	binding	to	HIV
DUF2070	PF09843.9	gi|345004440|ref|YP_004807293.1|	-	1.1	7.5	7.1	1.2	7.3	7.1	1.0	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2070)
DUF2627	PF11118.8	gi|345004440|ref|YP_004807293.1|	-	7.5	7.2	7.3	0.27	11.8	0.5	2.1	2	1	1	3	3	3	0	Protein	of	unknown	function	(DUF2627)
Thiolase_N	PF00108.23	gi|345004441|ref|YP_004807294.1|	-	7.2e-53	179.6	0.0	1e-52	179.1	0.0	1.2	1	0	0	1	1	1	1	Thiolase,	N-terminal	domain
Thiolase_C	PF02803.18	gi|345004441|ref|YP_004807294.1|	-	1.1e-09	37.9	0.1	4.2e-09	36.1	0.0	1.8	2	0	0	2	2	2	1	Thiolase,	C-terminal	domain
Ketoacyl-synt_C	PF02801.22	gi|345004441|ref|YP_004807294.1|	-	0.00012	22.0	0.1	0.52	10.3	0.0	3.1	3	0	0	3	3	3	2	Beta-ketoacyl	synthase,	C-terminal	domain
ketoacyl-synt	PF00109.26	gi|345004441|ref|YP_004807294.1|	-	0.045	13.3	3.5	0.18	11.3	0.8	2.6	1	1	2	3	3	3	0	Beta-ketoacyl	synthase,	N-terminal	domain
OB_aCoA_assoc	PF01796.17	gi|345004442|ref|YP_004807295.1|	-	5.4e-07	29.5	0.6	7.6e-07	29.0	0.6	1.2	1	0	0	1	1	1	1	DUF35	OB-fold	domain,	acyl-CoA-associated
PLDc_2	PF13091.6	gi|345004445|ref|YP_004807298.1|	-	2.1e-36	124.8	0.0	4.7e-19	68.6	0.0	2.2	2	0	0	2	2	2	2	PLD-like	domain
PLDc	PF00614.22	gi|345004445|ref|YP_004807298.1|	-	7e-08	32.3	1.3	6.2e-06	26.2	0.2	2.5	2	0	0	2	2	2	1	Phospholipase	D	Active	site	motif
Regulator_TrmB	PF11495.8	gi|345004445|ref|YP_004807298.1|	-	0.1	11.7	0.1	0.58	9.3	0.0	2.0	2	0	0	2	2	2	0	Archaeal	transcriptional	regulator	TrmB
PP_kinase_C_1	PF17941.1	gi|345004445|ref|YP_004807298.1|	-	0.28	10.7	0.3	22	4.5	0.0	2.3	2	0	0	2	2	2	0	Polyphosphate	kinase	C-terminal	domain	1
tRNA_anti-codon	PF01336.25	gi|345004446|ref|YP_004807299.1|	-	4.8e-08	32.9	0.1	9.3e-08	31.9	0.1	1.5	1	0	0	1	1	1	1	OB-fold	nucleic	acid	binding	domain
DHH	PF01368.20	gi|345004446|ref|YP_004807299.1|	-	0.00011	22.3	1.4	0.00015	22.0	0.2	1.8	2	0	0	2	2	2	1	DHH	family
DUF1343	PF07075.11	gi|345004446|ref|YP_004807299.1|	-	0.08	12.3	0.0	0.13	11.6	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1343)
S1	PF00575.23	gi|345004446|ref|YP_004807299.1|	-	0.65	10.4	5.1	0.17	12.2	1.6	2.0	2	1	0	2	2	2	0	S1	RNA	binding	domain
Prok-JAB	PF14464.6	gi|345004447|ref|YP_004807300.1|	-	5.6e-10	39.0	0.0	2.6e-09	36.9	0.0	1.8	1	1	1	2	2	2	1	Prokaryotic	homologs	of	the	JAB	domain
RadC	PF04002.15	gi|345004447|ref|YP_004807300.1|	-	0.0077	16.2	0.0	0.012	15.5	0.0	1.3	1	0	0	1	1	1	1	RadC-like	JAB	domain
CTP_transf_like	PF01467.26	gi|345004448|ref|YP_004807301.1|	-	2.7e-12	47.1	0.1	3.1e-12	46.9	0.1	1.1	1	0	0	1	1	1	1	Cytidylyltransferase-like
FAD_syn	PF06574.12	gi|345004448|ref|YP_004807301.1|	-	0.01	15.7	1.5	0.061	13.2	0.1	2.4	2	1	0	2	2	2	0	FAD	synthetase
UbiA	PF01040.18	gi|345004449|ref|YP_004807302.1|	-	1e-53	182.2	27.4	1e-53	182.2	27.4	2.5	2	1	0	2	2	2	1	UbiA	prenyltransferase	family
COX15-CtaA	PF02628.15	gi|345004449|ref|YP_004807302.1|	-	4.9e-07	29.1	14.3	7.1e-05	22.0	6.0	4.0	3	1	1	4	4	4	2	Cytochrome	oxidase	assembly	protein
DUF1453	PF07301.11	gi|345004449|ref|YP_004807302.1|	-	0.062	13.3	0.3	0.062	13.3	0.3	3.0	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF1453)
DUF1029	PF06269.12	gi|345004449|ref|YP_004807302.1|	-	0.12	12.5	1.2	2.3	8.4	0.2	2.9	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1029)
Rdx	PF10262.9	gi|345004451|ref|YP_004807304.1|	-	7.6e-17	61.3	0.0	8.6e-17	61.1	0.0	1.1	1	0	0	1	1	1	1	Rdx	family
MtrA	PF04208.14	gi|345004451|ref|YP_004807304.1|	-	0.028	14.1	0.1	0.032	13.9	0.1	1.1	1	0	0	1	1	1	0	Tetrahydromethanopterin	S-methyltransferase,	subunit	A
HxlR	PF01638.17	gi|345004452|ref|YP_004807305.1|	-	2.7e-21	75.2	0.0	3.2e-21	75.0	0.0	1.1	1	0	0	1	1	1	1	HxlR-like	helix-turn-helix
HTH_34	PF13601.6	gi|345004452|ref|YP_004807305.1|	-	4.1e-06	26.9	0.0	6.2e-06	26.3	0.0	1.2	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
PadR	PF03551.14	gi|345004452|ref|YP_004807305.1|	-	0.00025	20.9	0.1	0.00039	20.3	0.1	1.3	1	0	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
HTH_27	PF13463.6	gi|345004452|ref|YP_004807305.1|	-	0.00057	20.3	0.1	0.00089	19.7	0.1	1.3	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
Syntaxin-6_N	PF09177.11	gi|345004452|ref|YP_004807305.1|	-	0.0023	18.5	0.2	0.003	18.1	0.2	1.2	1	0	0	1	1	1	1	Syntaxin	6,	N-terminal
HTH_45	PF14947.6	gi|345004452|ref|YP_004807305.1|	-	0.0034	17.4	0.0	0.0045	17.0	0.0	1.2	1	0	0	1	1	1	1	Winged	helix-turn-helix
MarR	PF01047.22	gi|345004452|ref|YP_004807305.1|	-	0.0089	15.9	0.0	0.013	15.4	0.0	1.3	1	0	0	1	1	1	1	MarR	family
Connexin50	PF03509.14	gi|345004452|ref|YP_004807305.1|	-	0.016	15.9	0.0	0.041	14.7	0.0	1.6	2	0	0	2	2	1	0	Gap	junction	alpha-8	protein	(Cx50)
HTH_5	PF01022.20	gi|345004452|ref|YP_004807305.1|	-	0.02	14.8	0.0	0.027	14.3	0.0	1.2	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
TrmB	PF01978.19	gi|345004452|ref|YP_004807305.1|	-	0.031	14.2	0.0	0.045	13.6	0.0	1.3	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
DUF4364	PF14277.6	gi|345004452|ref|YP_004807305.1|	-	0.039	13.7	0.0	0.059	13.1	0.0	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4364)
TnsD	PF15978.5	gi|345004452|ref|YP_004807305.1|	-	0.058	12.4	0.0	0.063	12.3	0.0	1.0	1	0	0	1	1	1	0	Tn7-like	transposition	protein	D
MarR_2	PF12802.7	gi|345004452|ref|YP_004807305.1|	-	0.091	12.7	0.1	0.13	12.2	0.1	1.3	1	0	0	1	1	1	0	MarR	family
TFIIE_alpha	PF02002.17	gi|345004452|ref|YP_004807305.1|	-	0.11	12.4	0.0	0.14	12.0	0.0	1.2	1	0	0	1	1	1	0	TFIIE	alpha	subunit
GTP_EFTU	PF00009.27	gi|345004453|ref|YP_004807306.1|	-	3.5e-31	108.3	0.0	6.4e-31	107.4	0.0	1.4	1	0	0	1	1	1	1	Elongation	factor	Tu	GTP	binding	domain
GTP_EFTU_D2	PF03144.25	gi|345004453|ref|YP_004807306.1|	-	8.2e-10	38.9	0.4	2.4e-09	37.5	0.4	1.9	1	0	0	1	1	1	1	Elongation	factor	Tu	domain	2
GTP_EFTU_D3	PF03143.17	gi|345004453|ref|YP_004807306.1|	-	9.5e-07	29.1	0.0	4.7e-06	26.9	0.0	2.1	1	1	0	1	1	1	1	Elongation	factor	Tu	C-terminal	domain
ATP_bind_1	PF03029.17	gi|345004453|ref|YP_004807306.1|	-	0.038	13.8	0.0	0.33	10.7	0.0	2.0	2	0	0	2	2	2	0	Conserved	hypothetical	ATP	binding	protein
RsgA_GTPase	PF03193.16	gi|345004453|ref|YP_004807306.1|	-	0.066	13.1	0.0	1.9	8.4	0.0	2.3	2	0	0	2	2	2	0	RsgA	GTPase
DUF4423	PF14394.6	gi|345004454|ref|YP_004807307.1|	-	0.18	11.5	0.0	11	5.7	0.0	2.4	2	1	0	2	2	2	0	Domain	of	unknown	function	(DUF4423)
MCH	PF02289.16	gi|345004455|ref|YP_004807308.1|	-	1.7e-113	379.0	0.0	1.9e-113	378.9	0.0	1.0	1	0	0	1	1	1	1	Cyclohydrolase	(MCH)
ZirS_C	PF16583.5	gi|345004455|ref|YP_004807308.1|	-	0.13	11.8	0.2	16	5.1	0.1	2.3	2	0	0	2	2	2	0	Zinc-regulated	secreted	antivirulence	protein	C-terminal	domain
Thiamine_BP	PF01910.17	gi|345004456|ref|YP_004807309.1|	-	1.3e-21	76.3	0.1	1.5e-21	76.1	0.1	1.0	1	0	0	1	1	1	1	Thiamine-binding	protein
Amidase	PF01425.21	gi|345004457|ref|YP_004807310.1|	-	5.2e-109	365.2	0.0	5.9e-109	365.0	0.0	1.0	1	0	0	1	1	1	1	Amidase
Arm-DNA-bind_3	PF13356.6	gi|345004457|ref|YP_004807310.1|	-	1.2	9.5	3.0	1.1	9.7	0.5	2.2	3	0	0	3	3	3	0	Arm	DNA-binding	domain
PAS_9	PF13426.7	gi|345004458|ref|YP_004807311.1|	-	7.1e-18	64.8	0.1	1.3e-17	63.9	0.1	1.4	1	0	0	1	1	1	1	PAS	domain
PAS	PF00989.25	gi|345004458|ref|YP_004807311.1|	-	3.1e-09	36.8	0.1	6.8e-09	35.7	0.1	1.6	1	0	0	1	1	1	1	PAS	fold
PAS_4	PF08448.10	gi|345004458|ref|YP_004807311.1|	-	2.4e-08	34.2	0.4	6.2e-08	32.9	0.1	1.9	2	0	0	2	2	2	1	PAS	fold
PAS_3	PF08447.12	gi|345004458|ref|YP_004807311.1|	-	7.9e-06	26.1	0.0	1.6e-05	25.1	0.0	1.5	1	0	0	1	1	1	1	PAS	fold
PAS_8	PF13188.7	gi|345004458|ref|YP_004807311.1|	-	0.00015	21.7	0.0	0.00088	19.2	0.0	2.3	2	0	0	2	2	2	1	PAS	domain
SPOB_a	PF14689.6	gi|345004458|ref|YP_004807311.1|	-	0.00064	19.4	0.5	0.0014	18.3	0.5	1.6	1	0	0	1	1	1	1	Sensor_kinase_SpoOB-type,	alpha-helical	domain
HisKA	PF00512.25	gi|345004458|ref|YP_004807311.1|	-	0.004	17.1	0.7	0.012	15.7	0.5	1.9	1	1	0	1	1	1	1	His	Kinase	A	(phospho-acceptor)	domain
HisKA_4TM	PF16926.5	gi|345004458|ref|YP_004807311.1|	-	0.034	13.7	0.1	0.11	12.0	0.0	1.9	2	0	0	2	2	2	0	Archaeal	4TM	region	of	histidine	kinase
Aminotran_5	PF00266.19	gi|345004459|ref|YP_004807312.1|	-	8.1e-32	110.6	0.0	1e-31	110.2	0.0	1.1	1	0	0	1	1	1	1	Aminotransferase	class-V
DegT_DnrJ_EryC1	PF01041.17	gi|345004459|ref|YP_004807312.1|	-	0.0062	15.9	0.2	0.29	10.4	0.7	2.1	2	0	0	2	2	2	2	DegT/DnrJ/EryC1/StrS	aminotransferase	family
HAD	PF12710.7	gi|345004460|ref|YP_004807313.1|	-	1.2e-25	91.0	1.2	1.5e-25	90.7	1.2	1.1	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Hydrolase	PF00702.26	gi|345004460|ref|YP_004807313.1|	-	3.5e-12	47.1	9.0	1.3e-10	41.9	9.0	2.1	1	1	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Hydrolase_3	PF08282.12	gi|345004460|ref|YP_004807313.1|	-	6.7e-11	42.4	1.0	7e-09	35.8	0.0	2.9	3	0	0	3	3	3	1	haloacid	dehalogenase-like	hydrolase
HAD_2	PF13419.6	gi|345004460|ref|YP_004807313.1|	-	8.9e-05	22.6	0.2	0.01	15.9	0.0	2.8	2	1	0	2	2	2	1	Haloacid	dehalogenase-like	hydrolase
S6PP	PF05116.13	gi|345004460|ref|YP_004807313.1|	-	0.23	11.0	0.0	0.38	10.3	0.0	1.4	1	0	0	1	1	1	0	Sucrose-6F-phosphate	phosphohydrolase
2-Hacid_dh_C	PF02826.19	gi|345004461|ref|YP_004807314.1|	-	6.7e-60	201.5	0.0	1.2e-59	200.7	0.0	1.4	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
2-Hacid_dh	PF00389.30	gi|345004461|ref|YP_004807314.1|	-	3.3e-37	127.1	1.4	4.1e-36	123.6	0.7	2.1	2	0	0	2	2	2	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	catalytic	domain
ACT	PF01842.25	gi|345004461|ref|YP_004807314.1|	-	1.4e-05	24.7	0.5	6.8e-05	22.5	0.0	2.4	2	0	0	2	2	2	1	ACT	domain
IlvN	PF07991.12	gi|345004461|ref|YP_004807314.1|	-	0.00016	21.3	0.0	0.0011	18.5	0.0	2.4	2	1	0	2	2	2	1	Acetohydroxy	acid	isomeroreductase,	NADPH-binding	domain
NAD_binding_2	PF03446.15	gi|345004461|ref|YP_004807314.1|	-	0.00025	21.2	0.1	0.004	17.3	0.0	2.6	2	0	0	2	2	2	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
UDPG_MGDP_dh_C	PF03720.15	gi|345004461|ref|YP_004807314.1|	-	0.0031	17.9	0.1	0.016	15.6	0.0	2.2	2	0	0	2	2	2	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	UDP	binding	domain
TrkA_N	PF02254.18	gi|345004461|ref|YP_004807314.1|	-	0.012	15.9	1.5	0.074	13.3	0.0	3.2	4	0	0	4	4	4	0	TrkA-N	domain
NAD_binding_7	PF13241.6	gi|345004461|ref|YP_004807314.1|	-	0.017	15.5	0.1	0.069	13.6	0.0	2.1	2	1	0	2	2	2	0	Putative	NAD(P)-binding
F420_oxidored	PF03807.17	gi|345004461|ref|YP_004807314.1|	-	0.017	15.7	1.7	0.16	12.5	0.0	3.2	4	0	0	4	4	4	0	NADP	oxidoreductase	coenzyme	F420-dependent
Shikimate_DH	PF01488.20	gi|345004461|ref|YP_004807314.1|	-	0.21	11.6	0.8	0.79	9.8	0.1	2.4	2	1	1	3	3	3	0	Shikimate	/	quinate	5-dehydrogenase
Peptidase_M20	PF01546.28	gi|345004462|ref|YP_004807315.1|	-	1.3e-28	100.1	0.0	2.5e-28	99.2	0.0	1.5	1	1	0	1	1	1	1	Peptidase	family	M20/M25/M40
M20_dimer	PF07687.14	gi|345004462|ref|YP_004807315.1|	-	1.1e-20	73.6	0.0	3.8e-20	71.8	0.0	1.8	2	0	0	2	2	2	1	Peptidase	dimerisation	domain
OrfB_Zn_ribbon	PF07282.11	gi|345004463|ref|YP_004807316.1|	-	4.7e-22	77.7	0.7	3.8e-21	74.8	0.9	2.2	2	0	0	2	2	2	1	Putative	transposase	DNA-binding	domain
OrfB_IS605	PF01385.19	gi|345004463|ref|YP_004807316.1|	-	0.00024	21.3	0.2	0.00071	19.8	0.0	1.9	2	0	0	2	2	2	1	Probable	transposase
C1_2	PF03107.16	gi|345004463|ref|YP_004807316.1|	-	0.00092	19.5	1.1	0.0018	18.6	1.1	1.4	1	0	0	1	1	1	1	C1	domain
zf-HC5HC2H_2	PF13832.6	gi|345004463|ref|YP_004807316.1|	-	0.043	14.0	0.4	0.074	13.2	0.4	1.3	1	0	0	1	1	1	0	PHD-zinc-finger	like	domain
PHD	PF00628.29	gi|345004463|ref|YP_004807316.1|	-	0.23	11.4	3.4	0.17	11.8	1.4	1.8	2	0	0	2	2	2	0	PHD-finger
TAT_signal	PF10518.9	gi|345004465|ref|YP_004807318.1|	-	0.031	14.1	5.0	0.059	13.2	5.0	1.5	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
Trypsin_2	PF13365.6	gi|345004467|ref|YP_004807320.1|	-	0.00088	20.2	1.3	0.0017	19.2	0.9	1.6	1	1	0	1	1	1	1	Trypsin-like	peptidase	domain
Aminotran_1_2	PF00155.21	gi|345004469|ref|YP_004807322.1|	-	1.2e-38	133.2	0.0	1.5e-38	133.0	0.0	1.0	1	0	0	1	1	1	1	Aminotransferase	class	I	and	II
Aminotran_MocR	PF12897.7	gi|345004469|ref|YP_004807322.1|	-	1.7e-14	53.5	0.0	2.7e-14	52.8	0.0	1.4	1	1	0	1	1	1	1	Alanine-glyoxylate	amino-transferase
Aminotran_5	PF00266.19	gi|345004469|ref|YP_004807322.1|	-	0.043	12.8	0.0	0.064	12.2	0.0	1.2	1	0	0	1	1	1	0	Aminotransferase	class-V
Npun_R1517	PF18068.1	gi|345004469|ref|YP_004807322.1|	-	0.045	14.1	0.0	16	6.0	0.1	2.5	2	0	0	2	2	2	0	Npun	R1517
YAF2_RYBP	PF17219.3	gi|345004470|ref|YP_004807323.1|	-	0.083	12.5	1.8	0.12	11.9	1.8	1.2	1	0	0	1	1	1	0	Yaf2/RYBP	C-terminal	binding	motif
Arginosuc_synth	PF00764.19	gi|345004471|ref|YP_004807324.1|	-	3.5e-141	471.0	0.0	4.1e-141	470.8	0.0	1.0	1	0	0	1	1	1	1	Arginosuccinate	synthase
QueC	PF06508.13	gi|345004471|ref|YP_004807324.1|	-	3.5e-05	23.4	0.0	6.5e-05	22.5	0.0	1.5	1	0	0	1	1	1	1	Queuosine	biosynthesis	protein	QueC
NAD_synthase	PF02540.17	gi|345004471|ref|YP_004807324.1|	-	0.0024	17.0	0.0	0.0036	16.5	0.0	1.2	1	0	0	1	1	1	1	NAD	synthase
tRNA_Me_trans	PF03054.16	gi|345004471|ref|YP_004807324.1|	-	0.009	14.8	0.0	0.013	14.3	0.0	1.2	1	0	0	1	1	1	1	tRNA	methyl	transferase
Asn_synthase	PF00733.21	gi|345004471|ref|YP_004807324.1|	-	0.018	14.7	0.0	0.033	13.9	0.0	1.3	1	0	0	1	1	1	0	Asparagine	synthase
MeaB	PF03308.16	gi|345004471|ref|YP_004807324.1|	-	0.054	12.5	0.0	0.11	11.5	0.0	1.4	1	0	0	1	1	1	0	Methylmalonyl	Co-A	mutase-associated	GTPase	MeaB
ATP_bind_3	PF01171.20	gi|345004471|ref|YP_004807324.1|	-	0.082	12.7	0.0	0.25	11.1	0.0	1.9	2	0	0	2	2	2	0	PP-loop	family
Lyase_1	PF00206.20	gi|345004472|ref|YP_004807325.1|	-	7.4e-50	170.1	0.0	1.5e-49	169.1	0.0	1.5	1	0	0	1	1	1	1	Lyase
ASL_C2	PF14698.6	gi|345004472|ref|YP_004807325.1|	-	1e-13	51.8	3.3	4.7e-13	49.7	3.3	2.3	1	0	0	1	1	1	1	Argininosuccinate	lyase	C-terminal
TF_Zn_Ribbon	PF08271.12	gi|345004473|ref|YP_004807326.1|	-	0.018	14.6	2.1	0.024	14.2	2.1	1.3	1	0	0	1	1	1	0	TFIIB	zinc-binding
Lar_restr_allev	PF14354.6	gi|345004473|ref|YP_004807326.1|	-	0.027	14.8	0.1	0.034	14.5	0.1	1.1	1	0	0	1	1	1	0	Restriction	alleviation	protein	Lar
TackOD1	PF18551.1	gi|345004473|ref|YP_004807326.1|	-	0.037	13.7	0.0	0.042	13.5	0.0	1.0	1	0	0	1	1	1	0	Thaumarchaeal	output	domain	1
Zn-ribbon_8	PF09723.10	gi|345004473|ref|YP_004807326.1|	-	0.065	13.4	0.3	2.5	8.3	0.0	2.1	2	0	0	2	2	2	0	Zinc	ribbon	domain
zf-IS66	PF13005.7	gi|345004473|ref|YP_004807326.1|	-	0.068	13.6	2.3	1.2	9.5	0.2	2.1	1	1	1	2	2	2	0	zinc-finger	binding	domain	of	transposase	IS66
DNA_RNApol_7kD	PF03604.13	gi|345004473|ref|YP_004807326.1|	-	0.17	11.6	1.4	1	9.1	0.1	2.0	2	0	0	2	2	2	0	DNA	directed	RNA	polymerase,	7	kDa	subunit
RimK	PF08443.11	gi|345004474|ref|YP_004807327.1|	-	8.6e-27	94.0	0.0	1.1e-26	93.5	0.0	1.2	1	0	0	1	1	1	1	RimK-like	ATP-grasp	domain
ATP-grasp_3	PF02655.14	gi|345004474|ref|YP_004807327.1|	-	2.4e-12	47.2	0.0	3.4e-12	46.7	0.0	1.1	1	0	0	1	1	1	1	ATP-grasp	domain
ATP-grasp_5	PF13549.6	gi|345004474|ref|YP_004807327.1|	-	2.4e-06	27.2	0.0	9.5e-06	25.2	0.0	2.0	1	1	1	2	2	2	1	ATP-grasp	domain
ATP-grasp	PF02222.22	gi|345004474|ref|YP_004807327.1|	-	7.9e-06	25.5	0.0	3.1e-05	23.6	0.0	1.9	1	1	0	1	1	1	1	ATP-grasp	domain
CPSase_L_D2	PF02786.17	gi|345004474|ref|YP_004807327.1|	-	1.6e-05	24.5	0.0	3e-05	23.6	0.0	1.4	1	0	0	1	1	1	1	Carbamoyl-phosphate	synthase	L	chain,	ATP	binding	domain
ATPgrasp_ST	PF14397.6	gi|345004474|ref|YP_004807327.1|	-	7e-05	22.2	0.0	0.0025	17.1	0.0	2.2	2	1	0	2	2	2	1	Sugar-transfer	associated	ATP-grasp
Semialdhyde_dh	PF01118.24	gi|345004475|ref|YP_004807328.1|	-	8.5e-23	81.1	0.0	1.8e-22	80.0	0.0	1.6	1	0	0	1	1	1	1	Semialdehyde	dehydrogenase,	NAD	binding	domain
Semialdhyde_dhC	PF02774.18	gi|345004475|ref|YP_004807328.1|	-	5.5e-07	29.8	0.0	1.1e-06	28.9	0.0	1.6	1	1	0	1	1	1	1	Semialdehyde	dehydrogenase,	dimerisation	domain
Epimerase	PF01370.21	gi|345004475|ref|YP_004807328.1|	-	0.01	15.3	0.5	0.063	12.7	0.0	2.3	2	1	1	3	3	3	0	NAD	dependent	epimerase/dehydratase	family
DapB_N	PF01113.20	gi|345004475|ref|YP_004807328.1|	-	0.06	13.5	0.0	0.33	11.1	0.0	2.1	3	0	0	3	3	3	0	Dihydrodipicolinate	reductase,	N-terminus
AA_kinase	PF00696.28	gi|345004476|ref|YP_004807329.1|	-	5.3e-34	117.9	0.7	6.4e-34	117.6	0.7	1.1	1	0	0	1	1	1	1	Amino	acid	kinase	family
Aminotran_3	PF00202.21	gi|345004477|ref|YP_004807330.1|	-	8.1e-101	337.6	0.0	1e-100	337.3	0.0	1.0	1	0	0	1	1	1	1	Aminotransferase	class-III
Cys_Met_Meta_PP	PF01053.20	gi|345004477|ref|YP_004807330.1|	-	0.23	10.0	0.0	1.3	7.4	0.0	1.9	2	0	0	2	2	2	0	Cys/Met	metabolism	PLP-dependent	enzyme
Peptidase_M20	PF01546.28	gi|345004478|ref|YP_004807331.1|	-	1.9e-21	76.7	1.4	7.8e-21	74.7	1.4	1.9	1	1	0	1	1	1	1	Peptidase	family	M20/M25/M40
M20_dimer	PF07687.14	gi|345004478|ref|YP_004807331.1|	-	2.7e-07	30.5	0.0	5.7e-07	29.4	0.0	1.5	1	0	0	1	1	1	1	Peptidase	dimerisation	domain
OTCace	PF00185.24	gi|345004479|ref|YP_004807332.1|	-	4.7e-48	163.2	0.0	7.2e-48	162.6	0.0	1.3	1	0	0	1	1	1	1	Aspartate/ornithine	carbamoyltransferase,	Asp/Orn	binding	domain
OTCace_N	PF02729.21	gi|345004479|ref|YP_004807332.1|	-	7.8e-46	155.8	0.0	1.1e-45	155.3	0.0	1.2	1	0	0	1	1	1	1	Aspartate/ornithine	carbamoyltransferase,	carbamoyl-P	binding	domain
T3SS_ATPase_C	PF18269.1	gi|345004479|ref|YP_004807332.1|	-	0.16	11.8	0.0	0.3	11.0	0.0	1.4	1	0	0	1	1	1	0	T3SS	EscN	ATPase	C-terminal	domain
FmdA_AmdA	PF03069.15	gi|345004480|ref|YP_004807333.1|	-	3.9e-30	104.9	2.8	1.3e-14	53.9	0.2	2.7	1	1	1	2	2	2	2	Acetamidase/Formamidase	family
TRAM	PF01938.20	gi|345004480|ref|YP_004807333.1|	-	0.06	13.3	0.2	0.13	12.2	0.2	1.6	1	0	0	1	1	1	0	TRAM	domain
HMGL-like	PF00682.19	gi|345004481|ref|YP_004807334.1|	-	7e-52	176.6	1.9	7.4e-52	176.5	0.3	1.7	2	0	0	2	2	2	1	HMGL-like
CoA_transf_3	PF02515.17	gi|345004482|ref|YP_004807335.1|	-	1.5e-114	383.0	0.0	1.8e-114	382.7	0.0	1.0	1	0	0	1	1	1	1	CoA-transferase	family	III
LEM	PF03020.15	gi|345004482|ref|YP_004807335.1|	-	0.022	14.3	0.0	0.058	13.0	0.0	1.7	1	0	0	1	1	1	0	LEM	domain
DUF2688	PF10892.8	gi|345004482|ref|YP_004807335.1|	-	0.06	12.8	0.1	0.3	10.6	0.0	2.0	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2688)
HTH_31	PF13560.6	gi|345004482|ref|YP_004807335.1|	-	0.067	13.5	0.2	4.2	7.8	0.2	2.8	2	0	0	2	2	2	0	Helix-turn-helix	domain
DUF3347	PF11827.8	gi|345004482|ref|YP_004807335.1|	-	0.13	12.4	0.0	0.21	11.7	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3347)
ABC_tran	PF00005.27	gi|345004483|ref|YP_004807336.1|	-	6.5e-33	114.2	0.0	1.1e-32	113.4	0.0	1.4	1	0	0	1	1	1	1	ABC	transporter
TOBE_2	PF08402.10	gi|345004483|ref|YP_004807336.1|	-	3.2e-08	33.6	0.7	1.2e-07	31.7	0.5	2.2	2	0	0	2	2	1	1	TOBE	domain
AAA_21	PF13304.6	gi|345004483|ref|YP_004807336.1|	-	4.8e-08	33.2	0.0	0.0019	18.0	0.0	2.2	1	1	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
OB_MalK	PF17912.1	gi|345004483|ref|YP_004807336.1|	-	5e-08	33.7	0.7	4.4e-07	30.6	0.1	2.8	3	0	0	3	3	3	1	MalK	OB	fold	domain
CysA_C_terminal	PF17850.1	gi|345004483|ref|YP_004807336.1|	-	1.9e-05	25.1	0.8	0.00023	21.6	0.2	3.2	3	0	0	3	3	2	1	CysA	C-terminal	regulatory	domain
AAA_22	PF13401.6	gi|345004483|ref|YP_004807336.1|	-	0.0013	19.0	0.0	0.0038	17.5	0.0	1.7	1	0	0	1	1	1	1	AAA	domain
SMC_N	PF02463.19	gi|345004483|ref|YP_004807336.1|	-	0.0031	17.0	0.1	1.4	8.3	0.0	2.2	2	0	0	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
AAA_16	PF13191.6	gi|345004483|ref|YP_004807336.1|	-	0.0045	17.4	0.5	0.012	16.0	0.5	1.8	1	1	0	1	1	1	1	AAA	ATPase	domain
Rad17	PF03215.15	gi|345004483|ref|YP_004807336.1|	-	0.011	15.7	0.0	0.018	14.9	0.0	1.3	1	0	0	1	1	1	0	Rad17	P-loop	domain
AAA_30	PF13604.6	gi|345004483|ref|YP_004807336.1|	-	0.012	15.3	0.5	0.028	14.1	0.4	1.6	1	1	0	1	1	1	0	AAA	domain
AAA	PF00004.29	gi|345004483|ref|YP_004807336.1|	-	0.017	15.5	0.3	0.045	14.2	0.3	1.9	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_23	PF13476.6	gi|345004483|ref|YP_004807336.1|	-	0.023	15.2	0.3	0.043	14.3	0.1	1.5	2	0	0	2	2	1	0	AAA	domain
TOBE	PF03459.17	gi|345004483|ref|YP_004807336.1|	-	0.025	14.8	1.0	0.25	11.7	0.6	2.8	2	1	1	3	3	3	0	TOBE	domain
AAA_25	PF13481.6	gi|345004483|ref|YP_004807336.1|	-	0.029	13.9	0.1	0.075	12.6	0.0	1.7	2	0	0	2	2	2	0	AAA	domain
AAA_29	PF13555.6	gi|345004483|ref|YP_004807336.1|	-	0.04	13.6	0.1	0.091	12.5	0.1	1.6	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
RsgA_GTPase	PF03193.16	gi|345004483|ref|YP_004807336.1|	-	0.046	13.6	0.0	0.089	12.7	0.0	1.4	1	0	0	1	1	1	0	RsgA	GTPase
AAA_15	PF13175.6	gi|345004483|ref|YP_004807336.1|	-	0.076	12.7	0.0	0.13	12.0	0.0	1.3	1	0	0	1	1	1	0	AAA	ATPase	domain
AAA_28	PF13521.6	gi|345004483|ref|YP_004807336.1|	-	0.11	12.7	2.9	0.37	11.0	0.5	2.4	1	1	0	2	2	2	0	AAA	domain
AAA_19	PF13245.6	gi|345004483|ref|YP_004807336.1|	-	0.14	12.5	1.3	0.39	11.0	1.2	1.8	1	1	0	1	1	1	0	AAA	domain
AAA_24	PF13479.6	gi|345004483|ref|YP_004807336.1|	-	0.96	9.1	3.4	1.6	8.4	0.1	2.5	3	0	0	3	3	3	0	AAA	domain
BPD_transp_1	PF00528.22	gi|345004484|ref|YP_004807337.1|	-	1.5e-14	54.2	19.1	1.5e-14	54.2	19.1	2.4	1	1	1	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
DUF5090	PF17009.5	gi|345004484|ref|YP_004807337.1|	-	0.067	13.2	4.1	0.88	9.5	0.3	2.4	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF5090)
DUF677	PF05055.12	gi|345004484|ref|YP_004807337.1|	-	0.12	11.2	1.7	0.24	10.3	1.7	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF677)
BPD_transp_1	PF00528.22	gi|345004485|ref|YP_004807338.1|	-	1.3e-18	67.5	17.9	1.3e-18	67.5	17.9	2.0	1	1	1	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
SBP_bac_1	PF01547.25	gi|345004486|ref|YP_004807339.1|	-	3.7e-16	60.0	9.1	3.7e-16	60.0	9.1	1.5	2	0	0	2	2	2	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_11	PF13531.6	gi|345004486|ref|YP_004807339.1|	-	0.0077	16.0	1.1	0.02	14.6	0.3	2.3	2	1	0	2	2	2	1	Bacterial	extracellular	solute-binding	protein
Pex19	PF04614.12	gi|345004486|ref|YP_004807339.1|	-	0.016	15.0	0.0	0.033	14.0	0.0	1.5	1	0	0	1	1	1	0	Pex19	protein	family
TAT_signal	PF10518.9	gi|345004486|ref|YP_004807339.1|	-	1.1	9.2	10.2	0.036	13.9	3.5	2.0	2	0	0	2	2	2	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
HTH_10	PF04967.12	gi|345004487|ref|YP_004807340.1|	-	2.2e-20	72.2	0.1	3.3e-20	71.6	0.1	1.3	1	0	0	1	1	1	1	HTH	DNA	binding	domain
HTH_50	PF18024.1	gi|345004487|ref|YP_004807340.1|	-	0.15	11.7	0.4	1	9.0	0.2	2.2	1	1	1	2	2	2	0	Helix-turn-helix	domain
PEP_mutase	PF13714.6	gi|345004488|ref|YP_004807341.1|	-	0.035	13.6	0.1	0.038	13.4	0.1	1.1	1	0	0	1	1	1	0	Phosphoenolpyruvate	phosphomutase
MFS_1	PF07690.16	gi|345004489|ref|YP_004807342.1|	-	2.3e-52	178.1	76.7	1.5e-41	142.6	48.0	2.1	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
MFS_1_like	PF12832.7	gi|345004489|ref|YP_004807342.1|	-	1.8e-05	23.8	18.6	0.0084	15.0	2.9	3.0	1	1	1	2	2	2	2	MFS_1	like	family
Sugar_tr	PF00083.24	gi|345004489|ref|YP_004807342.1|	-	2.3e-05	23.5	10.2	2.3e-05	23.5	10.2	2.5	1	1	0	2	2	2	2	Sugar	(and	other)	transporter
MFS_4	PF06779.14	gi|345004489|ref|YP_004807342.1|	-	0.14	11.4	45.0	0.021	14.1	23.7	2.6	1	1	1	2	2	2	0	Uncharacterised	MFS-type	transporter	YbfB
AFOR_C	PF01314.18	gi|345004490|ref|YP_004807343.1|	-	2.9e-110	368.9	1.5	4e-110	368.4	1.5	1.1	1	0	0	1	1	1	1	Aldehyde	ferredoxin	oxidoreductase,	domains	2	&	3
AFOR_N	PF02730.15	gi|345004490|ref|YP_004807343.1|	-	5.9e-65	218.9	0.2	9.5e-65	218.2	0.2	1.3	1	0	0	1	1	1	1	Aldehyde	ferredoxin	oxidoreductase,	N-terminal	domain
DUF3052	PF11253.8	gi|345004490|ref|YP_004807343.1|	-	0.028	14.3	0.0	0.065	13.2	0.0	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3052)
Abhydrolase_3	PF07859.13	gi|345004491|ref|YP_004807344.1|	-	1.4e-64	217.8	0.3	1.8e-64	217.5	0.3	1.1	1	0	0	1	1	1	1	alpha/beta	hydrolase	fold
COesterase	PF00135.28	gi|345004491|ref|YP_004807344.1|	-	1.2e-06	27.7	0.0	3.6e-06	26.1	0.0	1.6	1	1	0	1	1	1	1	Carboxylesterase	family
Peptidase_S15	PF02129.18	gi|345004491|ref|YP_004807344.1|	-	0.014	15.0	0.0	0.64	9.6	0.0	2.2	2	0	0	2	2	2	0	X-Pro	dipeptidyl-peptidase	(S15	family)
Peptidase_S9	PF00326.21	gi|345004491|ref|YP_004807344.1|	-	0.025	14.1	0.2	0.06	12.8	0.1	1.6	2	0	0	2	2	2	0	Prolyl	oligopeptidase	family
AXE1	PF05448.12	gi|345004491|ref|YP_004807344.1|	-	0.16	10.6	0.0	3.6	6.2	0.0	2.1	2	0	0	2	2	2	0	Acetyl	xylan	esterase	(AXE1)
AAA_31	PF13614.6	gi|345004492|ref|YP_004807345.1|	-	3.8e-34	118.1	0.0	4.9e-34	117.8	0.0	1.1	1	0	0	1	1	1	1	AAA	domain
CbiA	PF01656.23	gi|345004492|ref|YP_004807345.1|	-	2.9e-15	56.5	0.0	4.2e-15	55.9	0.0	1.2	1	0	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
ParA	PF10609.9	gi|345004492|ref|YP_004807345.1|	-	1.3e-06	28.1	2.6	3.4e-05	23.4	0.4	2.2	2	0	0	2	2	2	2	NUBPL	iron-transfer	P-loop	NTPase
MipZ	PF09140.11	gi|345004492|ref|YP_004807345.1|	-	0.00022	20.6	0.7	0.045	13.0	0.3	2.4	2	0	0	2	2	2	2	ATPase	MipZ
ArsA_ATPase	PF02374.15	gi|345004492|ref|YP_004807345.1|	-	0.00023	20.5	0.1	0.027	13.7	0.0	2.2	2	0	0	2	2	2	2	Anion-transporting	ATPase
CBP_BcsQ	PF06564.12	gi|345004492|ref|YP_004807345.1|	-	0.0019	17.7	0.1	0.01	15.3	0.1	1.9	1	1	0	1	1	1	1	Cellulose	biosynthesis	protein	BcsQ
AAA_25	PF13481.6	gi|345004492|ref|YP_004807345.1|	-	0.15	11.6	0.2	0.42	10.1	0.0	1.8	2	0	0	2	2	2	0	AAA	domain
Fer4_NifH	PF00142.18	gi|345004492|ref|YP_004807345.1|	-	0.18	11.2	0.0	0.62	9.5	0.0	1.8	2	0	0	2	2	2	0	4Fe-4S	iron	sulfur	cluster	binding	proteins,	NifH/frxC	family
Peptidase_M20	PF01546.28	gi|345004494|ref|YP_004807347.1|	-	1.5e-31	109.7	0.2	2.3e-31	109.1	0.2	1.3	1	0	0	1	1	1	1	Peptidase	family	M20/M25/M40
M20_dimer	PF07687.14	gi|345004494|ref|YP_004807347.1|	-	1.3e-13	50.9	0.0	2.4e-13	49.9	0.0	1.5	1	0	0	1	1	1	1	Peptidase	dimerisation	domain
Peptidase_M28	PF04389.17	gi|345004494|ref|YP_004807347.1|	-	4.2e-07	29.8	0.0	7.9e-07	29.0	0.0	1.4	1	0	0	1	1	1	1	Peptidase	family	M28
Head-tail_con	PF12236.8	gi|345004494|ref|YP_004807347.1|	-	0.21	10.0	0.1	6.4	5.1	0.0	2.1	1	1	1	2	2	2	0	Bacteriophage	head	to	tail	connecting	protein
HMA	PF00403.26	gi|345004495|ref|YP_004807348.1|	-	5e-15	55.7	0.2	5.5e-15	55.6	0.2	1.0	1	0	0	1	1	1	1	Heavy-metal-associated	domain
Tubulin	PF00091.25	gi|345004496|ref|YP_004807349.1|	-	3.7e-16	59.9	0.0	7e-16	59.0	0.0	1.4	1	0	0	1	1	1	1	Tubulin/FtsZ	family,	GTPase	domain
Cupin_2	PF07883.11	gi|345004497|ref|YP_004807350.1|	-	1.4e-11	43.9	0.6	1.9e-11	43.5	0.6	1.2	1	0	0	1	1	1	1	Cupin	domain
Zn-ribbon_8	PF09723.10	gi|345004497|ref|YP_004807350.1|	-	0.00032	20.7	1.5	0.00058	19.9	1.5	1.4	1	0	0	1	1	1	1	Zinc	ribbon	domain
Cupin_3	PF05899.12	gi|345004497|ref|YP_004807350.1|	-	0.0012	18.5	0.3	0.0023	17.6	0.3	1.5	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF861)
Nudix_N_2	PF14803.6	gi|345004497|ref|YP_004807350.1|	-	0.083	12.8	1.9	1.2	9.1	1.7	2.4	1	1	0	1	1	1	0	Nudix	N-terminal
zf-RING_7	PF02591.15	gi|345004497|ref|YP_004807350.1|	-	0.43	10.8	0.0	0.43	10.8	0.0	2.0	2	0	0	2	2	2	0	C4-type	zinc	ribbon	domain
zinc_ribbon_2	PF13240.6	gi|345004497|ref|YP_004807350.1|	-	0.49	10.2	6.1	0.73	9.6	0.8	2.4	2	0	0	2	2	2	0	zinc-ribbon	domain
CoA_transf_3	PF02515.17	gi|345004498|ref|YP_004807351.1|	-	8.3e-123	410.1	0.0	9.7e-123	409.9	0.0	1.0	1	0	0	1	1	1	1	CoA-transferase	family	III
SAM_4	PF18017.1	gi|345004498|ref|YP_004807351.1|	-	0.039	13.9	0.0	0.079	12.9	0.0	1.4	1	0	0	1	1	1	0	SAM	domain	(Sterile	alpha	motif)
AAA_3	PF07726.11	gi|345004499|ref|YP_004807352.1|	-	1.9e-65	218.6	0.0	3.2e-65	217.9	0.0	1.4	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_lid_2	PF17863.1	gi|345004499|ref|YP_004807352.1|	-	1e-20	73.4	2.1	2.4e-20	72.1	2.1	1.7	1	0	0	1	1	1	1	AAA	lid	domain
AAA_5	PF07728.14	gi|345004499|ref|YP_004807352.1|	-	8e-14	51.8	0.0	1.8e-13	50.6	0.0	1.6	2	0	0	2	2	2	1	AAA	domain	(dynein-related	subfamily)
AAA	PF00004.29	gi|345004499|ref|YP_004807352.1|	-	1.1e-05	25.9	0.0	7.5e-05	23.2	0.0	2.2	2	1	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
Sigma54_activat	PF00158.26	gi|345004499|ref|YP_004807352.1|	-	8.5e-05	22.3	0.0	0.00028	20.6	0.0	1.7	1	1	0	1	1	1	1	Sigma-54	interaction	domain
Mg_chelatase	PF01078.21	gi|345004499|ref|YP_004807352.1|	-	0.0029	17.0	0.1	0.19	11.1	0.0	2.2	2	0	0	2	2	2	1	Magnesium	chelatase,	subunit	ChlI
AAA_lid_8	PF17868.1	gi|345004499|ref|YP_004807352.1|	-	0.035	14.0	0.0	0.063	13.2	0.0	1.4	1	0	0	1	1	1	0	AAA	lid	domain
RuvB_N	PF05496.12	gi|345004499|ref|YP_004807352.1|	-	0.04	13.7	0.0	0.86	9.3	0.0	2.2	2	0	0	2	2	2	0	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
MCM	PF00493.23	gi|345004499|ref|YP_004807352.1|	-	0.073	12.2	0.0	0.15	11.2	0.0	1.4	1	1	0	1	1	1	0	MCM	P-loop	domain
DUF45	PF01863.17	gi|345004500|ref|YP_004807353.1|	-	3.6e-50	170.9	0.0	4.4e-50	170.6	0.0	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF45
SprT-like	PF10263.9	gi|345004500|ref|YP_004807353.1|	-	0.049	13.5	0.2	0.093	12.6	0.2	1.5	1	1	0	1	1	1	0	SprT-like	family
LMWPc	PF01451.21	gi|345004501|ref|YP_004807354.1|	-	8.2e-19	68.4	0.0	1.1e-18	68.0	0.0	1.2	1	0	0	1	1	1	1	Low	molecular	weight	phosphotyrosine	protein	phosphatase
AvrPto	PF11592.8	gi|345004501|ref|YP_004807354.1|	-	0.058	13.4	0.0	0.09	12.8	0.0	1.3	1	0	0	1	1	1	0	Central	core	of	the	bacterial	effector	protein	AvrPto
NBD_C	PF17042.5	gi|345004502|ref|YP_004807355.1|	-	4.5	7.7	6.1	6.3	7.3	0.0	3.6	3	1	1	4	4	4	0	Nucleotide-binding	C-terminal	domain
UvrD-helicase	PF00580.21	gi|345004503|ref|YP_004807356.1|	-	5.1e-16	59.1	0.0	1.2e-15	57.8	0.0	1.5	2	0	0	2	2	2	1	UvrD/REP	helicase	N-terminal	domain
AAA_19	PF13245.6	gi|345004503|ref|YP_004807356.1|	-	3.6e-09	37.1	0.0	1.4e-06	28.7	0.0	2.4	2	0	0	2	2	2	2	AAA	domain
PDDEXK_1	PF12705.7	gi|345004503|ref|YP_004807356.1|	-	9.8e-09	35.5	0.0	2.1e-08	34.4	0.0	1.5	1	0	0	1	1	1	1	PD-(D/E)XK	nuclease	superfamily
AAA_30	PF13604.6	gi|345004503|ref|YP_004807356.1|	-	1.1e-07	31.7	0.1	0.00021	21.0	0.1	2.4	2	0	0	2	2	2	2	AAA	domain
UvrD_C_2	PF13538.6	gi|345004503|ref|YP_004807356.1|	-	6.5e-06	25.9	1.2	0.0049	16.7	1.3	2.8	2	0	0	2	2	2	2	UvrD-like	helicase	C-terminal	domain
AAA_22	PF13401.6	gi|345004503|ref|YP_004807356.1|	-	0.00034	20.9	0.0	1.2	9.4	0.0	2.5	2	0	0	2	2	2	2	AAA	domain
UvrD_C	PF13361.6	gi|345004503|ref|YP_004807356.1|	-	0.00047	19.7	0.0	0.0018	17.8	0.0	1.8	1	1	0	1	1	1	1	UvrD-like	helicase	C-terminal	domain
Viral_helicase1	PF01443.18	gi|345004503|ref|YP_004807356.1|	-	0.0024	17.7	0.8	0.33	10.7	0.0	3.1	3	0	0	3	3	3	1	Viral	(Superfamily	1)	RNA	helicase
PhoH	PF02562.16	gi|345004503|ref|YP_004807356.1|	-	0.032	13.7	0.0	0.089	12.2	0.0	1.7	2	0	0	2	2	2	0	PhoH-like	protein
AAA_11	PF13086.6	gi|345004503|ref|YP_004807356.1|	-	0.059	13.2	0.1	0.18	11.5	0.0	1.8	2	0	0	2	2	2	0	AAA	domain
NTP_transf_3	PF12804.7	gi|345004504|ref|YP_004807357.1|	-	3.1e-35	121.9	2.1	3.8e-35	121.6	2.1	1.1	1	0	0	1	1	1	1	MobA-like	NTP	transferase	domain
NTP_transferase	PF00483.23	gi|345004504|ref|YP_004807357.1|	-	1.1e-06	28.4	0.0	1.4e-06	28.1	0.0	1.0	1	0	0	1	1	1	1	Nucleotidyl	transferase
Beta-lactamase	PF00144.24	gi|345004505|ref|YP_004807358.1|	-	8e-56	189.7	2.5	1.2e-55	189.1	2.5	1.2	1	0	0	1	1	1	1	Beta-lactamase
Pab87_oct	PF13969.6	gi|345004505|ref|YP_004807358.1|	-	9.8e-32	108.9	0.0	1.8e-31	108.1	0.0	1.4	1	0	0	1	1	1	1	Pab87	octamerisation	domain
Ni_hydr_CYTB	PF01292.20	gi|345004508|ref|YP_004807361.1|	-	1.5e-18	67.1	17.1	1.5e-18	67.1	17.1	1.7	2	1	1	3	3	3	1	Prokaryotic	cytochrome	b561
PepSY_TM	PF03929.16	gi|345004508|ref|YP_004807361.1|	-	8.8	5.9	17.7	0.14	11.8	2.1	3.2	2	1	1	3	3	3	0	PepSY-associated	TM	region
DUF2568	PF10823.8	gi|345004509|ref|YP_004807362.1|	-	0.0018	18.5	3.9	0.004	17.4	0.2	2.1	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF2568)
Fer4_11	PF13247.6	gi|345004510|ref|YP_004807363.1|	-	3.5e-17	62.4	12.9	3.5e-17	62.4	12.9	2.4	2	1	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_7	PF12838.7	gi|345004510|ref|YP_004807363.1|	-	6.6e-15	55.4	23.9	1.2e-07	32.2	6.8	2.4	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_9	PF13187.6	gi|345004510|ref|YP_004807363.1|	-	3.1e-12	46.5	24.4	4.1e-06	26.9	7.9	3.2	2	1	1	3	3	3	3	4Fe-4S	dicluster	domain
Fer4_10	PF13237.6	gi|345004510|ref|YP_004807363.1|	-	8.7e-08	32.2	28.3	0.00013	22.0	10.0	3.1	1	1	2	3	3	3	3	4Fe-4S	dicluster	domain
Fer4	PF00037.27	gi|345004510|ref|YP_004807363.1|	-	3.4e-07	29.8	38.6	2.1e-05	24.1	2.7	5.3	5	0	0	5	5	5	3	4Fe-4S	binding	domain
Fer4_16	PF13484.6	gi|345004510|ref|YP_004807363.1|	-	3.4e-07	31.1	18.7	0.11	13.4	0.5	4.8	4	1	0	4	4	4	3	4Fe-4S	double	cluster	binding	domain
Fer4_21	PF14697.6	gi|345004510|ref|YP_004807363.1|	-	3.8e-06	26.9	28.6	0.00018	21.6	11.9	4.0	3	2	1	4	4	4	3	4Fe-4S	dicluster	domain
Fer4_2	PF12797.7	gi|345004510|ref|YP_004807363.1|	-	0.00017	21.4	35.3	0.0016	18.5	1.6	4.3	4	0	0	4	4	4	3	4Fe-4S	binding	domain
Fer4_8	PF13183.6	gi|345004510|ref|YP_004807363.1|	-	0.00021	21.7	25.4	0.012	16.0	7.2	3.0	2	2	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_6	PF12837.7	gi|345004510|ref|YP_004807363.1|	-	0.00028	20.8	40.7	0.0054	16.8	2.8	5.0	4	1	0	4	4	4	3	4Fe-4S	binding	domain
Fer4_3	PF12798.7	gi|345004510|ref|YP_004807363.1|	-	0.00083	20.1	43.1	0.029	15.3	4.0	4.3	4	0	0	4	4	4	3	4Fe-4S	binding	domain
Fer4_17	PF13534.6	gi|345004510|ref|YP_004807363.1|	-	0.0064	17.0	26.0	0.016	15.8	6.1	3.7	2	2	1	3	3	3	1	4Fe-4S	dicluster	domain
Fer4_4	PF12800.7	gi|345004510|ref|YP_004807363.1|	-	0.051	14.1	2.8	0.051	14.1	2.8	4.3	4	1	0	4	4	4	0	4Fe-4S	binding	domain
Fer4_18	PF13746.6	gi|345004510|ref|YP_004807363.1|	-	0.063	13.5	20.8	0.32	11.2	1.3	3.1	2	1	1	3	3	3	0	4Fe-4S	dicluster	domain
Molybdopterin	PF00384.22	gi|345004511|ref|YP_004807364.1|	-	1e-49	169.7	0.1	1.4e-49	169.2	0.1	1.2	1	0	0	1	1	1	1	Molybdopterin	oxidoreductase
Molydop_binding	PF01568.21	gi|345004511|ref|YP_004807364.1|	-	3.9e-18	65.5	0.0	1.8e-17	63.4	0.0	2.1	2	0	0	2	2	2	1	Molydopterin	dinucleotide	binding	domain
Molybdop_Fe4S4	PF04879.16	gi|345004511|ref|YP_004807364.1|	-	1.4e-12	47.3	0.2	3.1e-12	46.3	0.2	1.6	1	0	0	1	1	1	1	Molybdopterin	oxidoreductase	Fe4S4	domain
TAT_signal	PF10518.9	gi|345004511|ref|YP_004807364.1|	-	5e-05	23.0	3.8	0.00013	21.6	3.8	1.7	1	0	0	1	1	1	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
FlpD	PF02662.16	gi|345004512|ref|YP_004807365.1|	-	1.6e-22	79.7	0.0	1.4e-21	76.8	0.0	2.2	2	0	0	2	2	2	1	Methyl-viologen-reducing	hydrogenase,	delta	subunit
Fer4_9	PF13187.6	gi|345004512|ref|YP_004807365.1|	-	7.9e-14	51.6	33.8	5.8e-07	29.6	9.5	5.1	6	0	0	6	6	6	3	4Fe-4S	dicluster	domain
Fer4	PF00037.27	gi|345004512|ref|YP_004807365.1|	-	8.3e-13	47.6	48.5	7e-06	25.6	2.2	7.9	8	0	0	8	8	8	5	4Fe-4S	binding	domain
Fer4_7	PF12838.7	gi|345004512|ref|YP_004807365.1|	-	1.9e-12	47.6	41.6	1.2e-06	29.0	11.8	5.7	3	2	3	6	6	5	4	4Fe-4S	dicluster	domain
Fer4_16	PF13484.6	gi|345004512|ref|YP_004807365.1|	-	5.6e-12	46.4	30.2	0.0012	19.7	0.3	6.9	6	1	0	6	6	6	4	4Fe-4S	double	cluster	binding	domain
Fer4_21	PF14697.6	gi|345004512|ref|YP_004807365.1|	-	5.5e-10	39.2	34.9	3.8e-05	23.7	6.1	4.8	5	0	0	5	5	5	3	4Fe-4S	dicluster	domain
Fer4_8	PF13183.6	gi|345004512|ref|YP_004807365.1|	-	4.3e-09	36.7	19.2	0.0033	17.9	0.1	6.0	5	1	0	5	5	5	2	4Fe-4S	dicluster	domain
Fer4_10	PF13237.6	gi|345004512|ref|YP_004807365.1|	-	8e-07	29.1	41.8	0.00044	20.3	12.8	5.5	3	2	2	5	5	5	5	4Fe-4S	dicluster	domain
Fer4_6	PF12837.7	gi|345004512|ref|YP_004807365.1|	-	1.9e-06	27.7	11.4	2.3e-05	24.3	2.3	7.1	9	0	0	9	9	9	4	4Fe-4S	binding	domain
Fer4_17	PF13534.6	gi|345004512|ref|YP_004807365.1|	-	3.3e-06	27.6	23.7	0.026	15.1	0.1	5.9	5	1	1	6	6	6	2	4Fe-4S	dicluster	domain
Fer4_2	PF12797.7	gi|345004512|ref|YP_004807365.1|	-	0.00052	19.9	3.9	0.00052	19.9	3.9	7.4	8	0	0	8	8	8	3	4Fe-4S	binding	domain
Fer4_4	PF12800.7	gi|345004512|ref|YP_004807365.1|	-	0.011	16.2	46.2	0.013	15.9	3.8	7.0	7	0	0	7	7	6	0	4Fe-4S	binding	domain
Fer4_22	PF17179.4	gi|345004512|ref|YP_004807365.1|	-	2.9	8.8	28.4	0.39	11.6	0.7	5.4	4	1	1	5	5	5	0	4Fe-4S	dicluster	domain
Fer4_18	PF13746.6	gi|345004512|ref|YP_004807365.1|	-	7.4	6.8	29.3	0.67	10.2	1.1	5.2	4	2	2	6	6	6	0	4Fe-4S	dicluster	domain
Nitrate_red_del	PF02613.15	gi|345004513|ref|YP_004807366.1|	-	1.8e-24	86.3	0.1	2.5e-24	85.8	0.1	1.2	1	0	0	1	1	1	1	Nitrate	reductase	delta	subunit
Zn-ribbon_8	PF09723.10	gi|345004516|ref|YP_004807369.1|	-	0.00016	21.7	1.8	0.00021	21.3	1.8	1.1	1	0	0	1	1	1	1	Zinc	ribbon	domain
TF_Zn_Ribbon	PF08271.12	gi|345004516|ref|YP_004807369.1|	-	0.038	13.5	1.9	1.3	8.5	0.4	2.1	2	0	0	2	2	2	0	TFIIB	zinc-binding
zf-C2H2_4	PF13894.6	gi|345004516|ref|YP_004807369.1|	-	3.5	8.7	6.0	8.4	7.5	0.8	2.2	1	1	1	2	2	2	0	C2H2-type	zinc	finger
Prim_Zn_Ribbon	PF08273.12	gi|345004516|ref|YP_004807369.1|	-	8.9	6.7	7.9	18	5.7	1.2	2.4	1	1	1	2	2	2	0	Zinc-binding	domain	of	primase-helicase
NnrU	PF07298.11	gi|345004517|ref|YP_004807370.1|	-	0.0058	16.2	0.6	0.0063	16.1	0.6	1.0	1	0	0	1	1	1	1	NnrU	protein
AFOR_C	PF01314.18	gi|345004519|ref|YP_004807372.1|	-	2.1e-83	280.5	0.0	2.7e-83	280.1	0.0	1.1	1	0	0	1	1	1	1	Aldehyde	ferredoxin	oxidoreductase,	domains	2	&	3
AFOR_N	PF02730.15	gi|345004519|ref|YP_004807372.1|	-	3.7e-65	219.5	0.0	5.9e-65	218.9	0.0	1.3	1	0	0	1	1	1	1	Aldehyde	ferredoxin	oxidoreductase,	N-terminal	domain
HisKA_7TM	PF16927.5	gi|345004521|ref|YP_004807374.1|	-	1.7e-42	145.9	22.0	2.3e-42	145.5	22.0	1.1	1	0	0	1	1	1	1	N-terminal	7TM	region	of	histidine	kinase
HATPase_c	PF02518.26	gi|345004521|ref|YP_004807374.1|	-	2.6e-15	56.9	0.0	4.7e-15	56.1	0.0	1.5	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HisKA	PF00512.25	gi|345004521|ref|YP_004807374.1|	-	1.1e-06	28.6	0.8	2.6e-06	27.4	0.2	2.0	2	0	0	2	2	2	1	His	Kinase	A	(phospho-acceptor)	domain
HATPase_c_2	PF13581.6	gi|345004521|ref|YP_004807374.1|	-	1.1e-06	28.6	0.1	2.2e-06	27.7	0.1	1.5	1	0	0	1	1	1	1	Histidine	kinase-like	ATPase	domain
PAS_4	PF08448.10	gi|345004521|ref|YP_004807374.1|	-	2.1e-06	27.9	0.8	0.038	14.3	0.1	2.8	1	1	1	2	2	2	2	PAS	fold
PAS	PF00989.25	gi|345004521|ref|YP_004807374.1|	-	2.7e-05	24.1	1.8	0.0073	16.3	0.1	3.4	3	1	0	3	3	3	1	PAS	fold
HisKA_4TM	PF16926.5	gi|345004521|ref|YP_004807374.1|	-	0.0014	18.2	0.2	0.0039	16.8	0.2	1.8	1	0	0	1	1	1	1	Archaeal	4TM	region	of	histidine	kinase
SPOB_a	PF14689.6	gi|345004521|ref|YP_004807374.1|	-	0.031	14.0	0.1	0.057	13.1	0.1	1.4	1	0	0	1	1	1	0	Sensor_kinase_SpoOB-type,	alpha-helical	domain
PAS_9	PF13426.7	gi|345004521|ref|YP_004807374.1|	-	0.14	12.4	0.1	1.6	9.0	0.0	2.7	2	1	0	2	2	2	0	PAS	domain
CBS	PF00571.28	gi|345004522|ref|YP_004807375.1|	-	1.6e-29	102.1	6.0	9.3e-15	54.8	0.3	2.1	2	0	0	2	2	2	2	CBS	domain
HTH_20	PF12840.7	gi|345004525|ref|YP_004807378.1|	-	5.4e-08	32.8	0.8	9.2e-08	32.0	0.8	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_24	PF13412.6	gi|345004525|ref|YP_004807378.1|	-	4.1e-06	26.2	0.0	6.7e-06	25.6	0.0	1.3	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_11	PF08279.12	gi|345004525|ref|YP_004807378.1|	-	4.6e-06	26.5	0.0	7.2e-06	25.9	0.0	1.2	1	0	0	1	1	1	1	HTH	domain
MarR_2	PF12802.7	gi|345004525|ref|YP_004807378.1|	-	1.2e-05	25.1	0.4	2e-05	24.4	0.4	1.3	1	0	0	1	1	1	1	MarR	family
HTH_28	PF13518.6	gi|345004525|ref|YP_004807378.1|	-	3.6e-05	23.8	0.1	6.7e-05	22.9	0.1	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_AsnC-type	PF13404.6	gi|345004525|ref|YP_004807378.1|	-	5.3e-05	23.0	0.1	0.00046	20.0	0.1	2.3	2	0	0	2	2	2	1	AsnC-type	helix-turn-helix	domain
HTH_IclR	PF09339.10	gi|345004525|ref|YP_004807378.1|	-	0.00036	20.3	0.2	0.00065	19.4	0.2	1.4	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
MarR	PF01047.22	gi|345004525|ref|YP_004807378.1|	-	0.001	19.0	0.0	0.0014	18.5	0.0	1.2	1	0	0	1	1	1	1	MarR	family
Dimerisation2	PF16864.5	gi|345004525|ref|YP_004807378.1|	-	0.0014	18.6	0.0	0.0022	17.9	0.0	1.4	1	0	0	1	1	1	1	Dimerisation	domain
Rrf2	PF02082.20	gi|345004525|ref|YP_004807378.1|	-	0.0028	18.0	0.0	0.0047	17.3	0.0	1.3	1	0	0	1	1	1	1	Transcriptional	regulator
HTH_29	PF13551.6	gi|345004525|ref|YP_004807378.1|	-	0.0036	17.3	0.0	0.0056	16.7	0.0	1.3	1	0	0	1	1	1	1	Winged	helix-turn	helix
TrmB	PF01978.19	gi|345004525|ref|YP_004807378.1|	-	0.0036	17.2	0.0	0.0054	16.6	0.0	1.3	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_Crp_2	PF13545.6	gi|345004525|ref|YP_004807378.1|	-	0.0059	16.6	0.0	0.0079	16.1	0.0	1.3	1	0	0	1	1	1	1	Crp-like	helix-turn-helix	domain
HTH_27	PF13463.6	gi|345004525|ref|YP_004807378.1|	-	0.0099	16.4	0.0	0.018	15.6	0.0	1.4	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
DprA_WH	PF17782.1	gi|345004525|ref|YP_004807378.1|	-	0.01	16.0	0.4	0.019	15.0	0.4	1.4	1	0	0	1	1	1	1	DprA	winged	helix	domain
HTH_7	PF02796.15	gi|345004525|ref|YP_004807378.1|	-	0.016	15.3	0.0	0.03	14.4	0.0	1.5	1	0	0	1	1	1	0	Helix-turn-helix	domain	of	resolvase
HTH_32	PF13565.6	gi|345004525|ref|YP_004807378.1|	-	0.034	14.8	0.0	0.18	12.4	0.0	2.0	2	0	0	2	2	2	0	Homeodomain-like	domain
HTH_5	PF01022.20	gi|345004525|ref|YP_004807378.1|	-	0.04	13.8	0.0	0.055	13.3	0.0	1.3	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
HTH_23	PF13384.6	gi|345004525|ref|YP_004807378.1|	-	0.071	12.9	0.0	0.17	11.7	0.0	1.6	1	0	0	1	1	1	0	Homeodomain-like	domain
GntR	PF00392.21	gi|345004525|ref|YP_004807378.1|	-	0.084	12.5	0.3	1.1	9.0	0.2	2.1	2	0	0	2	2	2	0	Bacterial	regulatory	proteins,	gntR	family
Peptidase_S9	PF00326.21	gi|345004527|ref|YP_004807380.1|	-	2.6e-57	193.7	0.1	6.4e-57	192.4	0.0	1.6	2	0	0	2	2	2	1	Prolyl	oligopeptidase	family
Peptidase_S9_N	PF02897.15	gi|345004527|ref|YP_004807380.1|	-	8.5e-51	173.0	0.0	1.4e-50	172.4	0.0	1.3	1	0	0	1	1	1	1	Prolyl	oligopeptidase,	N-terminal	beta-propeller	domain
PD40	PF07676.12	gi|345004527|ref|YP_004807380.1|	-	0.089	12.8	0.0	0.26	11.3	0.0	1.8	1	0	0	1	1	1	0	WD40-like	Beta	Propeller	Repeat
p450	PF00067.22	gi|345004528|ref|YP_004807381.1|	-	1.6e-92	310.7	0.0	2e-92	310.4	0.0	1.0	1	0	0	1	1	1	1	Cytochrome	P450
Abhydrolase_5	PF12695.7	gi|345004529|ref|YP_004807382.1|	-	9e-41	139.4	0.0	1.2e-40	139.0	0.0	1.1	1	0	0	1	1	1	1	Alpha/beta	hydrolase	family
Hydrolase_4	PF12146.8	gi|345004529|ref|YP_004807382.1|	-	3e-07	30.0	0.1	4.1e-05	23.0	0.1	2.2	1	1	1	2	2	2	2	Serine	aminopeptidase,	S33
Abhydrolase_6	PF12697.7	gi|345004529|ref|YP_004807382.1|	-	0.00016	22.3	0.0	0.00021	22.0	0.0	1.1	1	0	0	1	1	1	1	Alpha/beta	hydrolase	family
Abhydrolase_1	PF00561.20	gi|345004529|ref|YP_004807382.1|	-	0.017	14.8	0.2	0.035	13.7	0.1	1.4	1	1	1	2	2	2	0	alpha/beta	hydrolase	fold
Lipase_3	PF01764.25	gi|345004529|ref|YP_004807382.1|	-	0.15	12.0	0.1	0.22	11.4	0.1	1.4	1	0	0	1	1	1	0	Lipase	(class	3)
TspO_MBR	PF03073.15	gi|345004531|ref|YP_004807384.1|	-	1.6e-43	148.0	22.5	2e-43	147.7	22.5	1.1	1	0	0	1	1	1	1	TspO/MBR	family
CcmF_C	PF16327.5	gi|345004531|ref|YP_004807384.1|	-	0.0044	16.4	9.5	0.0067	15.8	9.5	1.2	1	0	0	1	1	1	1	Cytochrome	c-type	biogenesis	protein	CcmF	C-terminal
5TM-5TMR_LYT	PF07694.12	gi|345004531|ref|YP_004807384.1|	-	0.013	15.1	3.0	0.022	14.3	3.0	1.4	1	0	0	1	1	1	0	5TMR	of	5TMR-LYT
DUF5518	PF17647.1	gi|345004532|ref|YP_004807385.1|	-	3.6e-15	56.1	36.5	5.6e-15	55.5	36.5	1.3	1	0	0	1	1	1	1	Family	of	unknown	function	(DUF5518)
DUF4013	PF13197.6	gi|345004532|ref|YP_004807385.1|	-	2.5	7.9	24.3	2.3e+02	1.5	24.5	2.1	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF4013)
Aldo_ket_red	PF00248.21	gi|345004533|ref|YP_004807386.1|	-	9.6e-51	172.7	0.0	3.5e-37	128.2	0.0	2.0	1	1	1	2	2	2	2	Aldo/keto	reductase	family
Amidase	PF01425.21	gi|345004534|ref|YP_004807387.1|	-	2.4e-141	471.8	1.0	2.9e-141	471.5	1.0	1.0	1	0	0	1	1	1	1	Amidase
Glu-tRNAGln	PF02686.15	gi|345004535|ref|YP_004807388.1|	-	8e-14	51.7	4.4	1.4e-13	50.9	4.4	1.3	1	0	0	1	1	1	1	Glu-tRNAGln	amidotransferase	C	subunit
RelB_N	PF18506.1	gi|345004535|ref|YP_004807388.1|	-	0.1	12.4	2.5	0.14	12.0	0.6	2.0	2	0	0	2	2	2	0	RelB	Antitoxin	alpha	helical	domain
MFS_1	PF07690.16	gi|345004536|ref|YP_004807389.1|	-	1.4e-18	67.0	73.0	7.7e-18	64.5	51.2	2.0	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
MFS_1_like	PF12832.7	gi|345004536|ref|YP_004807389.1|	-	1.9e-08	33.6	14.9	4.2e-06	25.9	14.9	2.1	1	1	0	1	1	1	1	MFS_1	like	family
OATP	PF03137.20	gi|345004536|ref|YP_004807389.1|	-	6.7	4.9	5.6	6.7	4.9	0.0	2.9	2	1	0	2	2	2	0	Organic	Anion	Transporter	Polypeptide	(OATP)	family
Acyl-CoA_dh_1	PF00441.24	gi|345004537|ref|YP_004807390.1|	-	2.5e-46	157.6	0.5	3.4e-46	157.2	0.5	1.2	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	C-terminal	domain
Acyl-CoA_dh_N	PF02771.16	gi|345004537|ref|YP_004807390.1|	-	1.9e-37	128.4	1.1	3.2e-37	127.6	0.2	1.9	2	0	0	2	2	2	1	Acyl-CoA	dehydrogenase,	N-terminal	domain
Acyl-CoA_dh_M	PF02770.19	gi|345004537|ref|YP_004807390.1|	-	2.9e-24	85.1	0.0	4.6e-24	84.4	0.0	1.3	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	middle	domain
Acyl-CoA_dh_2	PF08028.11	gi|345004537|ref|YP_004807390.1|	-	8.1e-17	61.7	0.4	1.4e-16	61.0	0.4	1.4	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	C-terminal	domain
TFIIB	PF00382.19	gi|345004538|ref|YP_004807391.1|	-	4.6e-41	138.7	0.4	1.6e-19	69.7	0.1	2.3	2	0	0	2	2	2	2	Transcription	factor	TFIIB	repeat
TF_Zn_Ribbon	PF08271.12	gi|345004538|ref|YP_004807391.1|	-	1.6e-16	59.5	2.2	3.6e-16	58.4	2.2	1.6	1	0	0	1	1	1	1	TFIIB	zinc-binding
Sigma70_r4	PF04545.16	gi|345004538|ref|YP_004807391.1|	-	0.0029	17.1	3.8	0.006	16.1	0.1	3.2	4	0	0	4	4	4	1	Sigma-70,	region	4
Anti-TRAP	PF15777.5	gi|345004538|ref|YP_004807391.1|	-	0.011	15.7	0.8	0.02	14.8	0.8	1.4	1	0	0	1	1	1	0	Tryptophan	RNA-binding	attenuator	protein	inhibitory	protein
Cyclin_C	PF02984.19	gi|345004538|ref|YP_004807391.1|	-	0.038	14.1	0.0	0.42	10.7	0.0	2.1	2	0	0	2	2	2	0	Cyclin,	C-terminal	domain
HTH_Tnp_ISL3	PF13542.6	gi|345004538|ref|YP_004807391.1|	-	0.075	12.5	0.1	0.23	10.9	0.1	1.9	1	0	0	1	1	1	0	Helix-turn-helix	domain	of	transposase	family	ISL3
OrfB_Zn_ribbon	PF07282.11	gi|345004538|ref|YP_004807391.1|	-	0.13	12.2	0.9	0.26	11.3	0.9	1.5	1	0	0	1	1	1	0	Putative	transposase	DNA-binding	domain
A2L_zn_ribbon	PF08792.10	gi|345004538|ref|YP_004807391.1|	-	0.37	10.6	2.7	1.7	8.5	2.7	1.9	1	1	0	1	1	1	0	A2L	zinc	ribbon	domain
MCC-bdg_PDZ	PF10506.9	gi|345004539|ref|YP_004807392.1|	-	1	9.4	2.9	1.5	8.9	0.4	2.4	2	0	0	2	2	2	0	PDZ	domain	of	MCC-2	bdg	protein	for	Usher	syndrome
HisKA	PF00512.25	gi|345004539|ref|YP_004807392.1|	-	1.3	9.1	4.4	10	6.2	0.0	3.2	2	1	1	3	3	3	0	His	Kinase	A	(phospho-acceptor)	domain
DUF4164	PF13747.6	gi|345004539|ref|YP_004807392.1|	-	2.3	8.5	12.8	0.11	12.8	5.9	2.3	3	1	0	3	3	3	0	Domain	of	unknown	function	(DUF4164)
EthD	PF07110.11	gi|345004540|ref|YP_004807393.1|	-	2.1e-16	60.9	4.5	7.2e-16	59.1	4.5	1.8	1	1	0	1	1	1	1	EthD	domain
MmlI	PF09448.10	gi|345004540|ref|YP_004807393.1|	-	4.1e-16	59.4	0.6	1.1e-14	54.9	0.6	2.0	1	1	0	1	1	1	1	Methylmuconolactone	methyl-isomerase
DUF4286	PF14114.6	gi|345004540|ref|YP_004807393.1|	-	0.079	13.5	0.0	0.1	13.1	0.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4286)
CoA_transf_3	PF02515.17	gi|345004542|ref|YP_004807395.1|	-	8.9e-138	459.4	0.0	1e-137	459.2	0.0	1.0	1	0	0	1	1	1	1	CoA-transferase	family	III
TPP_enzyme_N	PF02776.18	gi|345004543|ref|YP_004807396.1|	-	5e-44	149.9	2.8	1.1e-39	135.8	0.1	2.4	2	0	0	2	2	2	2	Thiamine	pyrophosphate	enzyme,	N-terminal	TPP	binding	domain
TPP_enzyme_C	PF02775.21	gi|345004543|ref|YP_004807396.1|	-	4.5e-37	127.2	0.2	1.5e-36	125.5	0.1	1.9	2	0	0	2	2	2	1	Thiamine	pyrophosphate	enzyme,	C-terminal	TPP	binding	domain
TPP_enzyme_M	PF00205.22	gi|345004543|ref|YP_004807396.1|	-	7.5e-36	122.9	0.5	1.7e-35	121.8	0.2	1.8	2	0	0	2	2	2	1	Thiamine	pyrophosphate	enzyme,	central	domain
Chordopox_G2	PF05796.12	gi|345004543|ref|YP_004807396.1|	-	0.25	10.7	0.0	0.4	10.1	0.0	1.2	1	0	0	1	1	1	0	Chordopoxvirus	protein	G2
Rhodanese	PF00581.20	gi|345004544|ref|YP_004807397.1|	-	1.1e-18	67.7	0.0	1.3e-18	67.5	0.0	1.0	1	0	0	1	1	1	1	Rhodanese-like	domain
Peptidase_S8	PF00082.22	gi|345004545|ref|YP_004807398.1|	-	9e-39	133.5	0.4	1.3e-38	132.9	0.4	1.2	1	0	0	1	1	1	1	Subtilase	family
TAT_signal	PF10518.9	gi|345004545|ref|YP_004807398.1|	-	0.0096	15.7	1.2	0.0096	15.7	1.2	2.2	2	0	0	2	2	2	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
MFS_MOT1	PF16983.5	gi|345004546|ref|YP_004807399.1|	-	1.9e-09	37.9	1.6	2.4e-09	37.6	1.6	1.1	1	0	0	1	1	1	1	Molybdate	transporter	of	MFS	superfamily
DUF4229	PF14012.6	gi|345004546|ref|YP_004807399.1|	-	0.023	14.8	2.6	0.048	13.8	2.6	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF4229)
DUF2484	PF10658.9	gi|345004547|ref|YP_004807400.1|	-	0.029	14.7	3.0	0.034	14.4	3.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2484)
ABC_tran	PF00005.27	gi|345004548|ref|YP_004807401.1|	-	2.7e-31	108.9	0.0	4e-31	108.4	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
oligo_HPY	PF08352.12	gi|345004548|ref|YP_004807401.1|	-	6.7e-20	71.4	0.3	1.4e-19	70.4	0.3	1.6	1	0	0	1	1	1	1	Oligopeptide/dipeptide	transporter,	C-terminal	region
AAA_22	PF13401.6	gi|345004548|ref|YP_004807401.1|	-	1e-05	25.8	0.9	0.00013	22.3	0.5	2.3	2	1	0	2	2	2	1	AAA	domain
SMC_N	PF02463.19	gi|345004548|ref|YP_004807401.1|	-	0.00048	19.6	0.0	0.00074	19.0	0.0	1.2	1	0	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_16	PF13191.6	gi|345004548|ref|YP_004807401.1|	-	0.0042	17.5	0.6	0.0079	16.6	0.6	1.7	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA	PF00004.29	gi|345004548|ref|YP_004807401.1|	-	0.0073	16.7	0.2	0.13	12.7	0.2	2.3	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_29	PF13555.6	gi|345004548|ref|YP_004807401.1|	-	0.047	13.4	0.1	0.083	12.6	0.1	1.3	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
AAA_33	PF13671.6	gi|345004548|ref|YP_004807401.1|	-	0.075	13.2	0.1	0.17	12.0	0.1	1.7	1	1	0	1	1	1	0	AAA	domain
AAA_21	PF13304.6	gi|345004548|ref|YP_004807401.1|	-	0.13	12.0	0.6	2.4	7.9	0.0	2.2	1	1	0	2	2	2	0	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AIG1	PF04548.16	gi|345004548|ref|YP_004807401.1|	-	0.15	11.3	0.0	0.22	10.8	0.0	1.3	1	0	0	1	1	1	0	AIG1	family
Sigma54_activat	PF00158.26	gi|345004548|ref|YP_004807401.1|	-	0.16	11.7	0.1	4.7	6.9	0.0	2.2	2	0	0	2	2	2	0	Sigma-54	interaction	domain
ABC_tran	PF00005.27	gi|345004549|ref|YP_004807402.1|	-	3.3e-28	98.9	0.0	4.3e-28	98.5	0.0	1.1	1	0	0	1	1	1	1	ABC	transporter
oligo_HPY	PF08352.12	gi|345004549|ref|YP_004807402.1|	-	4.6e-23	81.5	0.1	9.5e-23	80.5	0.1	1.6	1	0	0	1	1	1	1	Oligopeptide/dipeptide	transporter,	C-terminal	region
AAA_21	PF13304.6	gi|345004549|ref|YP_004807402.1|	-	3.5e-05	23.8	0.5	0.00021	21.2	0.0	2.0	1	1	0	2	2	2	1	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_29	PF13555.6	gi|345004549|ref|YP_004807402.1|	-	0.033	13.9	0.4	0.059	13.1	0.4	1.3	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
SMC_N	PF02463.19	gi|345004549|ref|YP_004807402.1|	-	0.076	12.4	0.1	0.21	11.0	0.1	1.6	1	1	0	1	1	1	0	RecF/RecN/SMC	N	terminal	domain
DUF2075	PF09848.9	gi|345004549|ref|YP_004807402.1|	-	0.1	11.8	0.0	0.14	11.4	0.0	1.1	1	0	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2075)
AAA_25	PF13481.6	gi|345004549|ref|YP_004807402.1|	-	0.13	11.8	0.1	24	4.4	0.1	2.6	3	0	0	3	3	3	0	AAA	domain
AAA_22	PF13401.6	gi|345004549|ref|YP_004807402.1|	-	0.31	11.3	1.5	3.1	8.1	1.5	2.1	1	1	0	1	1	1	0	AAA	domain
BPD_transp_1	PF00528.22	gi|345004550|ref|YP_004807403.1|	-	6.4e-29	101.0	6.6	6.4e-29	101.0	6.6	1.7	3	0	0	3	3	3	1	Binding-protein-dependent	transport	system	inner	membrane	component
OppC_N	PF12911.7	gi|345004550|ref|YP_004807403.1|	-	1.1e-10	41.3	0.0	1.1e-10	41.3	0.0	3.2	5	0	0	5	5	5	1	N-terminal	TM	domain	of	oligopeptide	transport	permease	C
SDF	PF00375.18	gi|345004550|ref|YP_004807403.1|	-	0.00012	21.2	2.3	0.00012	21.2	2.3	1.7	2	0	0	2	2	2	1	Sodium:dicarboxylate	symporter	family
BPD_transp_1	PF00528.22	gi|345004551|ref|YP_004807404.1|	-	6.4e-39	133.6	13.2	6.4e-39	133.6	13.2	1.7	3	0	0	3	3	3	1	Binding-protein-dependent	transport	system	inner	membrane	component
DUF1345	PF07077.11	gi|345004551|ref|YP_004807404.1|	-	2.2	7.9	6.4	0.64	9.7	0.5	2.3	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF1345)
SBP_bac_5	PF00496.22	gi|345004552|ref|YP_004807405.1|	-	4.6e-72	243.0	0.7	6e-72	242.7	0.7	1.1	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	proteins,	family	5	Middle
TAT_signal	PF10518.9	gi|345004552|ref|YP_004807405.1|	-	0.053	13.4	0.5	0.098	12.5	0.5	1.5	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
DUF4621	PF15414.6	gi|345004552|ref|YP_004807405.1|	-	0.067	12.1	0.0	0.11	11.4	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF4621)
Polyketide_cyc	PF03364.20	gi|345004553|ref|YP_004807406.1|	-	4.9e-08	33.3	2.0	8.4e-08	32.5	2.0	1.4	1	0	0	1	1	1	1	Polyketide	cyclase	/	dehydrase	and	lipid	transport
Polyketide_cyc2	PF10604.9	gi|345004553|ref|YP_004807406.1|	-	9e-08	32.5	3.5	1.2e-07	32.1	3.5	1.2	1	0	0	1	1	1	1	Polyketide	cyclase	/	dehydrase	and	lipid	transport
AHSA1	PF08327.11	gi|345004553|ref|YP_004807406.1|	-	0.02	15.1	1.6	0.036	14.3	1.6	1.5	1	1	0	1	1	1	0	Activator	of	Hsp90	ATPase	homolog	1-like	protein
TrkA_N	PF02254.18	gi|345004554|ref|YP_004807407.1|	-	4.8e-53	178.4	6.8	3.8e-28	98.1	1.7	2.5	2	0	0	2	2	2	2	TrkA-N	domain
TrkA_C	PF02080.21	gi|345004554|ref|YP_004807407.1|	-	2.4e-28	97.8	3.2	5e-14	51.9	0.0	2.9	3	0	0	3	3	3	2	TrkA-C	domain
Shikimate_DH	PF01488.20	gi|345004554|ref|YP_004807407.1|	-	1.6e-11	44.4	1.6	2e-05	24.7	0.6	2.5	2	0	0	2	2	2	2	Shikimate	/	quinate	5-dehydrogenase
NAD_binding_7	PF13241.6	gi|345004554|ref|YP_004807407.1|	-	6.2e-10	39.5	2.9	0.00019	21.8	0.6	2.5	2	0	0	2	2	2	2	Putative	NAD(P)-binding
NAD_binding_10	PF13460.6	gi|345004554|ref|YP_004807407.1|	-	9.4e-09	35.4	8.1	8.1e-05	22.6	0.6	2.6	3	0	0	3	3	3	2	NAD(P)H-binding
F420_oxidored	PF03807.17	gi|345004554|ref|YP_004807407.1|	-	5.3e-08	33.3	2.0	5.7e-05	23.6	0.4	3.0	2	0	0	2	2	2	2	NADP	oxidoreductase	coenzyme	F420-dependent
Sacchrp_dh_NADP	PF03435.18	gi|345004554|ref|YP_004807407.1|	-	9.1e-08	32.4	2.7	0.00047	20.4	0.5	2.8	2	0	0	2	2	2	2	Saccharopine	dehydrogenase	NADP	binding	domain
FAD_binding_3	PF01494.19	gi|345004554|ref|YP_004807407.1|	-	1.8e-07	30.8	0.2	0.0012	18.1	0.0	2.4	2	0	0	2	2	2	2	FAD	binding	domain
Pyr_redox	PF00070.27	gi|345004554|ref|YP_004807407.1|	-	0.0003	21.3	1.0	0.04	14.5	0.1	2.8	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
XdhC_C	PF13478.6	gi|345004554|ref|YP_004807407.1|	-	0.0012	19.3	0.9	0.27	11.7	0.1	2.5	2	0	0	2	2	2	1	XdhC	Rossmann	domain
ApbA	PF02558.16	gi|345004554|ref|YP_004807407.1|	-	0.0019	17.9	0.2	0.012	15.3	0.0	2.2	2	0	0	2	2	2	1	Ketopantoate	reductase	PanE/ApbA
NAD_binding_8	PF13450.6	gi|345004554|ref|YP_004807407.1|	-	0.0026	18.0	0.1	13	6.1	0.0	3.6	3	0	0	3	3	3	0	NAD(P)-binding	Rossmann-like	domain
DAO	PF01266.24	gi|345004554|ref|YP_004807407.1|	-	0.0028	17.3	4.0	0.25	10.9	0.0	3.1	2	1	1	3	3	3	2	FAD	dependent	oxidoreductase
Pyr_redox_2	PF07992.14	gi|345004554|ref|YP_004807407.1|	-	0.0028	16.9	2.8	0.062	12.5	0.2	2.5	2	1	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
3HCDH_N	PF02737.18	gi|345004554|ref|YP_004807407.1|	-	0.0056	16.6	0.4	0.43	10.4	0.2	2.3	2	0	0	2	2	2	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
adh_short	PF00106.25	gi|345004554|ref|YP_004807407.1|	-	0.029	13.8	0.7	0.36	10.3	0.0	2.2	2	0	0	2	2	2	0	short	chain	dehydrogenase
UDPG_MGDP_dh_N	PF03721.14	gi|345004554|ref|YP_004807407.1|	-	0.031	13.8	0.1	0.12	12.0	0.1	2.1	2	1	0	2	2	2	0	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
DUF2325	PF10087.9	gi|345004554|ref|YP_004807407.1|	-	0.042	14.0	0.0	4.1	7.6	0.0	3.0	3	0	0	3	3	3	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2325)
NAD_Gly3P_dh_N	PF01210.23	gi|345004554|ref|YP_004807407.1|	-	0.049	13.6	0.0	1.2	9.1	0.0	2.5	2	0	0	2	2	2	0	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
YflT	PF11181.8	gi|345004554|ref|YP_004807407.1|	-	0.073	13.6	1.7	1.6	9.3	0.0	3.0	3	1	0	3	3	3	0	Heat	induced	stress	protein	YflT
TrkH	PF02386.16	gi|345004555|ref|YP_004807408.1|	-	3.9e-61	207.0	3.7	5.5e-61	206.5	3.7	1.1	1	0	0	1	1	1	1	Cation	transport	protein
HxlR	PF01638.17	gi|345004556|ref|YP_004807409.1|	-	9.3e-26	89.5	0.0	1.1e-25	89.2	0.0	1.1	1	0	0	1	1	1	1	HxlR-like	helix-turn-helix
PadR	PF03551.14	gi|345004556|ref|YP_004807409.1|	-	0.0056	16.6	0.0	0.0078	16.2	0.0	1.3	1	0	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
MarR	PF01047.22	gi|345004556|ref|YP_004807409.1|	-	0.044	13.7	0.0	0.068	13.1	0.0	1.3	1	0	0	1	1	1	0	MarR	family
TrmB	PF01978.19	gi|345004556|ref|YP_004807409.1|	-	0.14	12.0	0.0	0.19	11.7	0.0	1.2	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
DUF3179	PF11376.8	gi|345004557|ref|YP_004807410.1|	-	4e-100	334.9	0.0	4.6e-100	334.7	0.0	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3179)
SIS	PF01380.22	gi|345004557|ref|YP_004807410.1|	-	0.14	12.1	0.0	6	6.7	0.0	2.2	2	0	0	2	2	2	0	SIS	domain
MerT	PF02411.15	gi|345004558|ref|YP_004807411.1|	-	0.44	10.6	6.2	0.57	10.2	5.3	1.7	1	1	0	1	1	1	0	MerT	mercuric	transport	protein
DUF1508	PF07411.12	gi|345004559|ref|YP_004807412.1|	-	4.5e-84	276.1	15.5	5.3e-18	64.6	0.1	5.7	6	0	0	6	6	6	5	Domain	of	unknown	function	(DUF1508)
AHSA1	PF08327.11	gi|345004559|ref|YP_004807412.1|	-	0.001	19.3	0.2	0.02	15.1	0.0	2.9	2	1	0	2	2	2	1	Activator	of	Hsp90	ATPase	homolog	1-like	protein
DUF5110	PF17137.4	gi|345004559|ref|YP_004807412.1|	-	0.074	13.3	0.0	44	4.5	0.0	3.3	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF5110)
Phage_GP20	PF06810.11	gi|345004559|ref|YP_004807412.1|	-	0.094	12.5	2.9	0.18	11.6	2.9	1.4	1	0	0	1	1	1	0	Phage	minor	structural	protein	GP20
Pox_A_type_inc	PF04508.12	gi|345004559|ref|YP_004807412.1|	-	0.14	12.0	0.3	0.51	10.3	0.1	2.1	2	0	0	2	2	2	0	Viral	A-type	inclusion	protein	repeat
FUSC	PF04632.12	gi|345004559|ref|YP_004807412.1|	-	0.18	10.3	13.8	0.017	13.7	9.0	1.7	2	0	0	2	2	2	0	Fusaric	acid	resistance	protein	family
Syntaxin-6_N	PF09177.11	gi|345004559|ref|YP_004807412.1|	-	0.24	12.0	5.6	0.38	11.3	0.5	2.8	2	1	1	3	3	3	0	Syntaxin	6,	N-terminal
Spc7	PF08317.11	gi|345004559|ref|YP_004807412.1|	-	0.25	10.2	3.0	0.47	9.3	3.0	1.4	1	0	0	1	1	1	0	Spc7	kinetochore	protein
DUF3611	PF12263.8	gi|345004559|ref|YP_004807412.1|	-	0.43	10.5	3.8	1	9.3	0.5	2.2	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3611)
APG6_N	PF17675.1	gi|345004559|ref|YP_004807412.1|	-	2.7	8.5	14.1	0.9	10.1	11.0	1.7	2	0	0	2	2	2	0	Apg6	coiled-coil	region
GARS_A	PF01071.19	gi|345004560|ref|YP_004807413.1|	-	6.3e-11	42.4	0.0	1.3e-10	41.4	0.0	1.6	1	1	0	1	1	1	1	Phosphoribosylglycinamide	synthetase,	ATP-grasp	(A)	domain
GARS_C	PF02843.16	gi|345004560|ref|YP_004807413.1|	-	6.2e-07	29.6	0.0	1.4e-06	28.4	0.0	1.7	1	0	0	1	1	1	1	Phosphoribosylglycinamide	synthetase,	C	domain
ATP-grasp_5	PF13549.6	gi|345004560|ref|YP_004807413.1|	-	0.04	13.4	0.0	0.13	11.7	0.0	1.8	2	0	0	2	2	2	0	ATP-grasp	domain
NHase_alpha	PF02979.16	gi|345004561|ref|YP_004807414.1|	-	8.2e-80	266.5	0.0	9.4e-80	266.3	0.0	1.0	1	0	0	1	1	1	1	Nitrile	hydratase,	alpha	chain
Frankia_peptide	PF14407.6	gi|345004561|ref|YP_004807414.1|	-	0.11	12.5	0.8	0.53	10.3	0.0	2.4	3	0	0	3	3	3	0	Ribosomally	synthesized	peptide	prototyped	by	Frankia	Franean1_4349.
NHase_beta	PF02211.15	gi|345004562|ref|YP_004807415.1|	-	2.9e-06	27.5	0.1	4.4e-05	23.6	0.1	2.0	1	1	0	1	1	1	1	Nitrile	hydratase	beta	subunit
Ribosomal_L44	PF00935.19	gi|345004563|ref|YP_004807416.1|	-	3.5e-22	78.7	6.2	4.2e-22	78.4	6.2	1.1	1	0	0	1	1	1	1	Ribosomal	protein	L44
Siva	PF05458.12	gi|345004563|ref|YP_004807416.1|	-	0.0065	16.2	0.1	0.0078	15.9	0.1	1.2	1	0	0	1	1	1	1	Cd27	binding	protein	(Siva)
zinc_ribbon_4	PF13717.6	gi|345004563|ref|YP_004807416.1|	-	0.046	13.6	1.3	0.23	11.4	0.1	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
F-112	PF09645.10	gi|345004563|ref|YP_004807416.1|	-	0.083	13.0	1.5	0.12	12.5	1.4	1.4	1	1	0	1	1	1	0	F-112	protein
zf-Mss51	PF13824.6	gi|345004563|ref|YP_004807416.1|	-	0.97	9.6	7.6	1.9	8.7	7.6	1.5	1	1	0	1	1	1	0	Zinc-finger	of	mitochondrial	splicing	suppressor	51
Ribosomal_S27e	PF01667.17	gi|345004564|ref|YP_004807417.1|	-	8.1e-21	73.5	1.6	8.5e-21	73.4	1.6	1.0	1	0	0	1	1	1	1	Ribosomal	protein	S27
Zn-ribbon_8	PF09723.10	gi|345004564|ref|YP_004807417.1|	-	0.0086	16.2	1.4	0.012	15.8	1.4	1.2	1	0	0	1	1	1	1	Zinc	ribbon	domain
Zn_Tnp_IS91	PF14319.6	gi|345004564|ref|YP_004807417.1|	-	0.015	15.3	0.4	0.019	15.0	0.4	1.1	1	0	0	1	1	1	0	Transposase	zinc-binding	domain
MRNIP	PF15749.5	gi|345004564|ref|YP_004807417.1|	-	0.016	15.9	1.9	0.019	15.7	1.9	1.1	1	0	0	1	1	1	0	MRN-interacting	protein
HypA	PF01155.19	gi|345004564|ref|YP_004807417.1|	-	0.025	14.6	0.8	0.029	14.4	0.8	1.1	1	0	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
Ephrin_rec_like	PF07699.13	gi|345004564|ref|YP_004807417.1|	-	0.027	14.3	0.9	0.032	14.0	0.9	1.2	1	0	0	1	1	1	0	Putative	ephrin-receptor	like
DUF2318	PF10080.9	gi|345004564|ref|YP_004807417.1|	-	0.03	14.4	0.7	0.034	14.3	0.7	1.1	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2318)
eIF-5_eIF-2B	PF01873.17	gi|345004564|ref|YP_004807417.1|	-	0.087	12.7	2.6	0.11	12.4	2.6	1.1	1	0	0	1	1	1	0	Domain	found	in	IF2B/IF5
zinc_ribbon_6	PF14599.6	gi|345004564|ref|YP_004807417.1|	-	0.11	12.6	2.8	0.22	11.6	2.9	1.5	1	1	0	1	1	1	0	Zinc-ribbon
zf-C2H2_3	PF13878.6	gi|345004564|ref|YP_004807417.1|	-	0.19	11.6	1.6	5.6	6.9	0.1	2.1	2	0	0	2	2	2	0	zinc-finger	of	acetyl-transferase	ESCO
zinc_ribbon_4	PF13717.6	gi|345004564|ref|YP_004807417.1|	-	0.43	10.5	3.5	9	6.3	0.2	2.2	1	1	1	2	2	2	0	zinc-ribbon	domain
zf-LSD1	PF06943.12	gi|345004564|ref|YP_004807417.1|	-	2.4	8.1	6.8	2.5	8.0	1.2	2.3	2	1	1	3	3	3	0	LSD1	zinc	finger
Zn_Tnp_IS1	PF03811.13	gi|345004564|ref|YP_004807417.1|	-	5.2	6.9	6.8	1.9	8.3	1.2	2.1	1	1	1	2	2	2	0	InsA	N-terminal	domain
EIF_2_alpha	PF07541.12	gi|345004565|ref|YP_004807418.1|	-	2.1e-25	89.1	0.0	4e-25	88.2	0.0	1.4	1	0	0	1	1	1	1	Eukaryotic	translation	initiation	factor	2	alpha	subunit
S1	PF00575.23	gi|345004565|ref|YP_004807418.1|	-	1.5e-12	47.6	1.9	3.3e-12	46.6	1.9	1.5	1	0	0	1	1	1	1	S1	RNA	binding	domain
CwfJ_C_2	PF04676.14	gi|345004565|ref|YP_004807418.1|	-	0.087	13.7	0.2	0.16	12.9	0.2	1.4	1	0	0	1	1	1	0	Protein	similar	to	CwfJ	C-terminus	2
Nop10p	PF04135.12	gi|345004566|ref|YP_004807419.1|	-	3.4e-20	71.8	0.5	4.3e-20	71.5	0.5	1.1	1	0	0	1	1	1	1	Nucleolar	RNA-binding	protein,	Nop10p	family
PAC2	PF09754.9	gi|345004567|ref|YP_004807420.1|	-	6.2e-47	160.4	0.1	8.2e-47	160.0	0.1	1.2	1	0	0	1	1	1	1	PAC2	family
CobT	PF06213.12	gi|345004567|ref|YP_004807420.1|	-	0.94	8.8	11.7	0.33	10.3	8.5	1.7	2	0	0	2	2	2	0	Cobalamin	biosynthesis	protein	CobT
Roughex	PF06020.11	gi|345004567|ref|YP_004807420.1|	-	2	7.4	8.8	3	6.9	8.8	1.3	1	0	0	1	1	1	0	Drosophila	roughex	protein
SDA1	PF05285.12	gi|345004567|ref|YP_004807420.1|	-	2.3	7.5	10.4	3.2	7.1	10.4	1.2	1	0	0	1	1	1	0	SDA1
Nop14	PF04147.12	gi|345004567|ref|YP_004807420.1|	-	3.6	5.7	11.1	4.6	5.3	11.1	1.1	1	0	0	1	1	1	0	Nop14-like	family
CDC45	PF02724.14	gi|345004567|ref|YP_004807420.1|	-	9.1	4.4	6.3	12	4.0	6.3	1.2	1	0	0	1	1	1	0	CDC45-like	protein
Flp_Fap	PF04964.14	gi|345004568|ref|YP_004807421.1|	-	0.082	12.8	1.9	0.1	12.4	1.8	1.3	1	1	0	1	1	1	0	Flp/Fap	pilin	component
AAA	PF00004.29	gi|345004569|ref|YP_004807422.1|	-	3.8e-44	150.3	0.1	3.8e-44	150.3	0.1	2.2	3	0	0	3	3	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_lid_3	PF17862.1	gi|345004569|ref|YP_004807422.1|	-	5.5e-13	48.5	2.3	5.5e-13	48.5	2.3	2.2	2	0	0	2	2	1	1	AAA+	lid	domain
AAA_2	PF07724.14	gi|345004569|ref|YP_004807422.1|	-	1.4e-08	35.1	0.0	3.6e-08	33.7	0.0	1.7	1	0	0	1	1	1	1	AAA	domain	(Cdc48	subfamily)
AAA_5	PF07728.14	gi|345004569|ref|YP_004807422.1|	-	9.3e-07	28.9	0.3	9.9e-06	25.6	0.2	2.7	1	1	0	1	1	1	1	AAA	domain	(dynein-related	subfamily)
RuvB_N	PF05496.12	gi|345004569|ref|YP_004807422.1|	-	2.3e-06	27.4	0.0	6.3e-06	26.0	0.0	1.7	2	0	0	2	2	1	1	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
AAA_22	PF13401.6	gi|345004569|ref|YP_004807422.1|	-	1.6e-05	25.2	0.6	0.0023	18.2	0.0	2.8	1	1	1	2	2	2	1	AAA	domain
AAA_16	PF13191.6	gi|345004569|ref|YP_004807422.1|	-	2e-05	25.0	6.3	0.00036	21.0	0.0	3.4	2	2	0	3	3	3	1	AAA	ATPase	domain
Prot_ATP_ID_OB	PF16450.5	gi|345004569|ref|YP_004807422.1|	-	4e-05	23.5	0.2	0.00027	20.8	0.2	2.3	2	0	0	2	2	2	1	Proteasomal	ATPase	OB	C-terminal	domain
AAA_18	PF13238.6	gi|345004569|ref|YP_004807422.1|	-	0.00034	21.2	0.7	0.0047	17.5	0.0	2.7	2	2	0	2	2	2	1	AAA	domain
GrpE	PF01025.19	gi|345004569|ref|YP_004807422.1|	-	0.00067	19.3	7.9	0.0017	18.0	7.9	1.6	1	0	0	1	1	1	1	GrpE
TIP49	PF06068.13	gi|345004569|ref|YP_004807422.1|	-	0.00074	18.8	0.2	0.0024	17.2	0.0	1.9	2	0	0	2	2	2	1	TIP49	P-loop	domain
AAA_14	PF13173.6	gi|345004569|ref|YP_004807422.1|	-	0.00099	19.1	0.2	0.0045	17.0	0.0	2.0	2	0	0	2	2	2	1	AAA	domain
AAA_17	PF13207.6	gi|345004569|ref|YP_004807422.1|	-	0.0014	19.1	7.9	0.19	12.2	0.0	3.0	3	0	0	3	3	2	2	AAA	domain
AAA_7	PF12775.7	gi|345004569|ref|YP_004807422.1|	-	0.0019	17.7	0.8	0.5	9.9	0.0	2.6	2	1	0	2	2	2	1	P-loop	containing	dynein	motor	region
AAA_33	PF13671.6	gi|345004569|ref|YP_004807422.1|	-	0.0019	18.3	0.2	0.0084	16.3	0.0	2.2	2	1	0	2	2	2	1	AAA	domain
Mg_chelatase	PF01078.21	gi|345004569|ref|YP_004807422.1|	-	0.0027	17.1	0.2	0.031	13.7	0.1	2.3	2	0	0	2	2	2	1	Magnesium	chelatase,	subunit	ChlI
DUF815	PF05673.13	gi|345004569|ref|YP_004807422.1|	-	0.0042	16.3	0.0	0.0089	15.2	0.0	1.6	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF815)
Sigma54_activat	PF00158.26	gi|345004569|ref|YP_004807422.1|	-	0.0052	16.5	0.2	0.14	11.8	0.2	2.6	1	1	0	1	1	1	1	Sigma-54	interaction	domain
AAA_11	PF13086.6	gi|345004569|ref|YP_004807422.1|	-	0.0054	16.6	1.7	0.12	12.1	0.0	2.4	2	0	0	2	2	2	1	AAA	domain
IstB_IS21	PF01695.17	gi|345004569|ref|YP_004807422.1|	-	0.0069	16.1	0.1	0.02	14.7	0.1	1.7	1	0	0	1	1	1	1	IstB-like	ATP	binding	protein
Atg14	PF10186.9	gi|345004569|ref|YP_004807422.1|	-	0.015	14.4	0.7	0.023	13.8	0.7	1.3	1	0	0	1	1	1	0	Vacuolar	sorting	38	and	autophagy-related	subunit	14
RNA_helicase	PF00910.22	gi|345004569|ref|YP_004807422.1|	-	0.016	15.6	0.0	0.039	14.3	0.0	1.7	1	0	0	1	1	1	0	RNA	helicase
AAA_30	PF13604.6	gi|345004569|ref|YP_004807422.1|	-	0.016	14.9	0.0	0.056	13.2	0.0	2.1	1	1	0	1	1	1	0	AAA	domain
AAA_28	PF13521.6	gi|345004569|ref|YP_004807422.1|	-	0.023	14.9	3.1	0.026	14.8	0.0	2.6	3	0	0	3	3	3	0	AAA	domain
AAA_24	PF13479.6	gi|345004569|ref|YP_004807422.1|	-	0.025	14.3	2.3	0.13	12.0	0.1	2.6	2	1	0	2	2	2	0	AAA	domain
ATPase	PF06745.13	gi|345004569|ref|YP_004807422.1|	-	0.028	13.7	8.3	0.21	10.9	0.0	3.5	3	1	1	4	4	3	0	KaiC
AAA_3	PF07726.11	gi|345004569|ref|YP_004807422.1|	-	0.041	13.7	0.2	0.13	12.1	0.0	2.1	3	0	0	3	3	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
PhoH	PF02562.16	gi|345004569|ref|YP_004807422.1|	-	0.052	13.0	0.0	0.12	11.8	0.0	1.6	1	0	0	1	1	1	0	PhoH-like	protein
NACHT	PF05729.12	gi|345004569|ref|YP_004807422.1|	-	0.057	13.3	0.9	0.32	10.9	0.0	2.4	2	1	1	3	3	2	0	NACHT	domain
TsaE	PF02367.17	gi|345004569|ref|YP_004807422.1|	-	0.067	13.2	0.0	0.13	12.3	0.0	1.5	1	0	0	1	1	1	0	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
Fez1	PF06818.15	gi|345004569|ref|YP_004807422.1|	-	0.071	13.6	6.2	0.16	12.4	6.2	1.6	1	0	0	1	1	1	0	Fez1
bZIP_1	PF00170.21	gi|345004569|ref|YP_004807422.1|	-	0.094	12.8	9.5	0.37	10.9	0.8	2.6	1	1	0	2	2	2	0	bZIP	transcription	factor
Torsin	PF06309.11	gi|345004569|ref|YP_004807422.1|	-	0.1	12.7	0.0	0.22	11.6	0.0	1.5	1	0	0	1	1	1	0	Torsin
DUF4438	PF14505.6	gi|345004569|ref|YP_004807422.1|	-	0.11	11.4	0.0	0.18	10.7	0.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4438)
DUF2334	PF10096.9	gi|345004569|ref|YP_004807422.1|	-	0.12	12.0	0.0	0.19	11.3	0.0	1.3	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2334)
NTPase_1	PF03266.15	gi|345004569|ref|YP_004807422.1|	-	0.2	11.5	2.1	1.8	8.4	0.1	2.9	2	1	0	2	2	2	0	NTPase
AAA_25	PF13481.6	gi|345004569|ref|YP_004807422.1|	-	0.35	10.4	7.9	0.66	9.5	0.2	3.5	2	2	1	3	3	3	0	AAA	domain
SHE3	PF17078.5	gi|345004569|ref|YP_004807422.1|	-	0.5	10.1	10.2	0.91	9.2	10.2	1.4	1	0	0	1	1	1	0	SWI5-dependent	HO	expression	protein	3
ABC_tran	PF00005.27	gi|345004569|ref|YP_004807422.1|	-	0.51	10.8	5.9	0.94	10.0	0.0	2.8	2	1	0	2	2	2	0	ABC	transporter
LRRFIP	PF09738.9	gi|345004569|ref|YP_004807422.1|	-	0.65	9.4	13.3	2.4	7.6	13.4	1.8	1	1	0	1	1	1	0	LRRFIP	family
DivIVA	PF05103.13	gi|345004569|ref|YP_004807422.1|	-	0.74	9.9	8.4	0.083	13.0	2.8	2.3	2	1	1	3	3	2	0	DivIVA	protein
Cep57_CLD_2	PF14197.6	gi|345004569|ref|YP_004807422.1|	-	0.75	9.9	10.3	2.3	8.4	10.3	1.8	1	0	0	1	1	1	0	Centrosome	localisation	domain	of	PPC89
GAS	PF13851.6	gi|345004569|ref|YP_004807422.1|	-	0.83	9.0	12.7	1.5	8.1	12.5	1.5	1	1	0	1	1	1	0	Growth-arrest	specific	micro-tubule	binding
Fmp27_WPPW	PF10359.9	gi|345004569|ref|YP_004807422.1|	-	1.3	7.8	10.1	0.24	10.2	6.3	1.6	2	0	0	2	2	2	0	RNA	pol	II	promoter	Fmp27	protein	domain
APG6_N	PF17675.1	gi|345004569|ref|YP_004807422.1|	-	4.3	7.9	13.3	0.66	10.5	9.0	1.9	2	0	0	2	2	1	0	Apg6	coiled-coil	region
YabA	PF06156.13	gi|345004569|ref|YP_004807422.1|	-	5.9	7.6	8.4	65	4.3	8.0	2.6	1	1	2	3	3	3	0	Initiation	control	protein	YabA
ABC_tran_CTD	PF16326.5	gi|345004569|ref|YP_004807422.1|	-	6.8	7.0	12.4	3.3	8.0	9.0	2.3	2	0	0	2	2	1	0	ABC	transporter	C-terminal	domain
Csm1_N	PF18504.1	gi|345004569|ref|YP_004807422.1|	-	8.6	6.8	10.6	8.4	6.8	2.1	3.1	1	1	1	2	2	2	0	Csm1	N-terminal	domain
UPF0242	PF06785.11	gi|345004569|ref|YP_004807422.1|	-	8.9	6.4	13.4	4	7.5	10.7	1.7	1	1	1	2	2	1	0	Uncharacterised	protein	family	(UPF0242)	N-terminus
Metallophos	PF00149.28	gi|345004571|ref|YP_004807424.1|	-	7.2e-11	43.0	0.1	1.5e-10	42.0	0.1	1.7	2	0	0	2	2	2	1	Calcineurin-like	phosphoesterase
Metallophos_2	PF12850.7	gi|345004571|ref|YP_004807424.1|	-	9.4e-11	42.2	0.2	2.4e-10	40.9	0.1	1.8	2	0	0	2	2	2	1	Calcineurin-like	phosphoesterase	superfamily	domain
Lip_A_acyltrans	PF03279.13	gi|345004571|ref|YP_004807424.1|	-	0.077	12.1	0.0	0.13	11.4	0.0	1.2	1	0	0	1	1	1	0	Bacterial	lipid	A	biosynthesis	acyltransferase
AAA_23	PF13476.6	gi|345004572|ref|YP_004807425.1|	-	1.5e-19	71.3	15.4	1.5e-19	71.3	15.4	6.7	1	1	2	3	3	1	1	AAA	domain
SMC_N	PF02463.19	gi|345004572|ref|YP_004807425.1|	-	6.2e-10	38.9	42.4	2e-09	37.2	42.4	1.9	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_15	PF13175.6	gi|345004572|ref|YP_004807425.1|	-	1.1e-09	38.5	0.3	1.1e-09	38.5	0.3	4.0	2	2	0	3	3	3	1	AAA	ATPase	domain
AAA_21	PF13304.6	gi|345004572|ref|YP_004807425.1|	-	2.3e-07	30.9	5.6	1.8e-05	24.7	4.6	3.2	3	2	0	3	3	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_27	PF13514.6	gi|345004572|ref|YP_004807425.1|	-	3e-07	30.3	0.0	3e-07	30.3	0.0	6.3	4	2	3	8	8	7	1	AAA	domain
AAA_29	PF13555.6	gi|345004572|ref|YP_004807425.1|	-	3.5e-06	26.7	0.1	2.3e-05	24.1	0.0	2.2	2	0	0	2	2	2	1	P-loop	containing	region	of	AAA	domain
DUF3584	PF12128.8	gi|345004572|ref|YP_004807425.1|	-	8.9e-05	20.2	42.6	8.9e-05	20.2	42.6	3.1	2	1	0	3	3	3	2	Protein	of	unknown	function	(DUF3584)
FliJ	PF02050.16	gi|345004572|ref|YP_004807425.1|	-	0.0082	16.4	3.6	0.0082	16.4	3.6	7.2	2	2	5	7	7	7	1	Flagellar	FliJ	protein
Spc7	PF08317.11	gi|345004572|ref|YP_004807425.1|	-	0.068	12.0	109.6	0.042	12.7	17.4	5.6	2	2	4	6	6	6	0	Spc7	kinetochore	protein
DUF1664	PF07889.12	gi|345004572|ref|YP_004807425.1|	-	0.099	12.7	48.9	0.053	13.6	0.9	7.0	2	2	5	7	7	7	0	Protein	of	unknown	function	(DUF1664)
ABC_tran	PF00005.27	gi|345004572|ref|YP_004807425.1|	-	0.13	12.8	0.0	0.13	12.8	0.0	4.9	2	1	0	2	2	1	0	ABC	transporter
AAA_13	PF13166.6	gi|345004572|ref|YP_004807425.1|	-	0.21	10.2	71.6	1.9	7.0	20.8	5.6	2	1	3	5	5	5	0	AAA	domain
NPV_P10	PF05531.12	gi|345004572|ref|YP_004807425.1|	-	0.31	11.5	26.1	3.3	8.2	1.1	7.5	4	2	4	9	9	9	0	Nucleopolyhedrovirus	P10	protein
RPW8	PF05659.11	gi|345004572|ref|YP_004807425.1|	-	0.75	9.5	23.2	0.061	13.0	0.3	6.0	5	1	1	6	6	6	0	Arabidopsis	broad-spectrum	mildew	resistance	protein	RPW8
Fib_alpha	PF08702.10	gi|345004572|ref|YP_004807425.1|	-	0.78	9.9	41.5	0.82	9.9	4.7	5.7	3	1	1	5	5	5	0	Fibrinogen	alpha/beta	chain	family
GAS	PF13851.6	gi|345004572|ref|YP_004807425.1|	-	1.2	8.4	87.9	0.087	12.2	16.9	5.6	2	2	5	7	7	7	0	Growth-arrest	specific	micro-tubule	binding
CENP-F_leu_zip	PF10473.9	gi|345004572|ref|YP_004807425.1|	-	1.7	8.7	113.5	0.13	12.3	9.8	7.1	2	2	5	7	7	7	0	Leucine-rich	repeats	of	kinetochore	protein	Cenp-F/LEK1
FapA	PF03961.13	gi|345004572|ref|YP_004807425.1|	-	1.7	7.2	61.0	0.29	9.7	2.1	5.7	1	1	4	6	6	6	0	Flagellar	Assembly	Protein	A
DUF4407	PF14362.6	gi|345004572|ref|YP_004807425.1|	-	3.1	7.1	93.3	1.6	8.0	17.8	5.2	1	1	4	5	5	5	0	Domain	of	unknown	function	(DUF4407)
TPR_MLP1_2	PF07926.12	gi|345004572|ref|YP_004807425.1|	-	4.4	7.4	117.7	0.4	10.8	19.7	7.5	2	2	6	8	8	8	0	TPR/MLP1/MLP2-like	protein
MukB	PF04310.12	gi|345004572|ref|YP_004807425.1|	-	7.5	6.3	8.9	0.85	9.4	0.0	3.6	3	2	1	4	4	4	0	MukB	N-terminal
Atg14	PF10186.9	gi|345004572|ref|YP_004807425.1|	-	9.5	5.2	70.5	6.8	5.7	15.3	5.8	1	1	3	4	4	3	0	Vacuolar	sorting	38	and	autophagy-related	subunit	14
MarR_2	PF12802.7	gi|345004573|ref|YP_004807426.1|	-	0.029	14.3	0.7	0.058	13.3	0.1	1.9	2	0	0	2	2	2	0	MarR	family
DNA_pol_B	PF00136.21	gi|345004576|ref|YP_004807429.1|	-	4.5e-31	108.1	0.0	3.9e-22	78.6	0.0	3.3	3	0	0	3	3	3	3	DNA	polymerase	family	B
DNA_pol_B_exo1	PF03104.19	gi|345004576|ref|YP_004807429.1|	-	7e-31	107.6	0.0	1.2e-30	106.9	0.0	1.4	1	0	0	1	1	1	1	DNA	polymerase	family	B,	exonuclease	domain
Hint_2	PF13403.6	gi|345004576|ref|YP_004807429.1|	-	3.5e-11	43.6	0.0	1.8e-06	28.3	0.0	3.2	2	1	0	2	2	2	2	Hint	domain
Intein_splicing	PF14890.6	gi|345004576|ref|YP_004807429.1|	-	4.9e-10	39.5	0.0	0.00019	21.4	0.0	3.5	3	1	0	3	3	3	2	Intein	splicing	domain
LAGLIDADG_3	PF14528.6	gi|345004576|ref|YP_004807429.1|	-	2.9e-09	37.1	0.6	0.012	15.9	0.0	4.8	5	0	0	5	5	5	2	LAGLIDADG-like	domain
Hint	PF01079.20	gi|345004576|ref|YP_004807429.1|	-	3.7e-08	33.1	0.0	7.4e-06	25.6	0.0	2.3	2	0	0	2	2	2	2	Hint	module
PT-HINT	PF07591.11	gi|345004576|ref|YP_004807429.1|	-	7.5e-05	23.0	0.0	0.15	12.3	0.0	2.9	3	0	0	3	3	3	2	Pretoxin	HINT	domain
RNase_H_2	PF13482.6	gi|345004576|ref|YP_004807429.1|	-	0.081	12.9	0.0	0.67	9.9	0.0	2.6	2	1	0	2	2	2	0	RNase_H	superfamily
DNA_pol_B_exo2	PF10108.9	gi|345004576|ref|YP_004807429.1|	-	0.16	11.6	0.0	0.32	10.7	0.0	1.4	1	0	0	1	1	1	0	Predicted	3'-5'	exonuclease	related	to	the	exonuclease	domain	of	PolB
Glycos_transf_2	PF00535.26	gi|345004577|ref|YP_004807430.1|	-	1.2e-09	38.2	0.0	1.7e-09	37.7	0.0	1.2	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
GtrA	PF04138.14	gi|345004578|ref|YP_004807431.1|	-	9.5e-18	64.5	5.6	1.5e-17	63.9	5.6	1.3	1	1	0	1	1	1	1	GtrA-like	protein
Rieske	PF00355.26	gi|345004579|ref|YP_004807432.1|	-	6.6e-05	22.8	0.0	8.5e-05	22.4	0.0	1.2	1	0	0	1	1	1	1	Rieske	[2Fe-2S]	domain
BACON	PF13004.7	gi|345004579|ref|YP_004807432.1|	-	0.085	12.9	0.3	0.15	12.1	0.3	1.4	1	0	0	1	1	1	0	Putative	binding	domain,	N-terminal
Aminotran_4	PF01063.19	gi|345004581|ref|YP_004807434.1|	-	3e-52	177.7	0.0	3.5e-52	177.5	0.0	1.0	1	0	0	1	1	1	1	Amino-transferase	class	IV
GATase	PF00117.28	gi|345004582|ref|YP_004807435.1|	-	1.2e-45	155.6	0.0	1.4e-45	155.5	0.0	1.0	1	0	0	1	1	1	1	Glutamine	amidotransferase	class-I
Peptidase_C26	PF07722.13	gi|345004582|ref|YP_004807435.1|	-	5.8e-07	29.5	0.8	1.7e-06	28.0	0.8	1.7	1	1	0	1	1	1	1	Peptidase	C26
Chorismate_bind	PF00425.18	gi|345004583|ref|YP_004807436.1|	-	6.5e-100	334.0	0.0	9.1e-100	333.5	0.0	1.2	1	0	0	1	1	1	1	chorismate	binding	enzyme
Anth_synt_I_N	PF04715.13	gi|345004583|ref|YP_004807436.1|	-	6.8e-05	23.1	0.0	0.00015	22.0	0.0	1.6	1	0	0	1	1	1	1	Anthranilate	synthase	component	I,	N	terminal	region
HHH_5	PF14520.6	gi|345004584|ref|YP_004807437.1|	-	9.2e-10	39.0	0.3	5.4e-09	36.5	0.1	2.2	2	0	0	2	2	2	1	Helix-hairpin-helix	domain
DUF4332	PF14229.6	gi|345004584|ref|YP_004807437.1|	-	2e-06	28.1	0.2	6.7e-05	23.1	0.2	2.3	1	1	0	1	1	1	1	Domain	of	unknown	function	(DUF4332)
Cdd1	PF11731.8	gi|345004584|ref|YP_004807437.1|	-	1.7e-05	25.0	0.0	2.7e-05	24.3	0.0	1.3	1	0	0	1	1	1	1	Pathogenicity	locus
TfoX_C	PF04994.13	gi|345004584|ref|YP_004807437.1|	-	0.16	12.0	0.0	0.29	11.3	0.0	1.3	1	0	0	1	1	1	0	TfoX	C-terminal	domain
Shikimate_dh_N	PF08501.11	gi|345004585|ref|YP_004807438.1|	-	1.1e-25	89.7	0.0	2.8e-25	88.4	0.0	1.7	1	0	0	1	1	1	1	Shikimate	dehydrogenase	substrate	binding	domain
SDH_C	PF18317.1	gi|345004585|ref|YP_004807438.1|	-	1.7e-13	50.0	0.3	3.5e-13	49.1	0.3	1.5	1	0	0	1	1	1	1	Shikimate	5'-dehydrogenase	C-terminal	domain
Shikimate_DH	PF01488.20	gi|345004585|ref|YP_004807438.1|	-	9.9e-12	45.1	0.0	1.5e-11	44.5	0.0	1.2	1	0	0	1	1	1	1	Shikimate	/	quinate	5-dehydrogenase
Sacchrp_dh_NADP	PF03435.18	gi|345004585|ref|YP_004807438.1|	-	1.1e-05	25.7	0.8	4.3e-05	23.8	0.5	2.1	2	1	0	2	2	2	1	Saccharopine	dehydrogenase	NADP	binding	domain
FAD_binding_2	PF00890.24	gi|345004585|ref|YP_004807438.1|	-	3.1e-05	23.3	2.8	3.6e-05	23.0	2.8	1.2	1	0	0	1	1	1	1	FAD	binding	domain
AlaDh_PNT_C	PF01262.21	gi|345004585|ref|YP_004807438.1|	-	4.1e-05	23.0	1.2	6.3e-05	22.4	1.2	1.2	1	0	0	1	1	1	1	Alanine	dehydrogenase/PNT,	C-terminal	domain
AdoHcyase_NAD	PF00670.21	gi|345004585|ref|YP_004807438.1|	-	0.0007	19.7	1.2	0.0011	19.1	1.2	1.2	1	0	0	1	1	1	1	S-adenosyl-L-homocysteine	hydrolase,	NAD	binding	domain
NAD_binding_7	PF13241.6	gi|345004585|ref|YP_004807438.1|	-	0.0015	18.9	0.2	0.0026	18.2	0.2	1.3	1	0	0	1	1	1	1	Putative	NAD(P)-binding
F420_oxidored	PF03807.17	gi|345004585|ref|YP_004807438.1|	-	0.0017	18.9	0.2	0.0031	18.1	0.2	1.4	1	0	0	1	1	1	1	NADP	oxidoreductase	coenzyme	F420-dependent
GIDA	PF01134.22	gi|345004585|ref|YP_004807438.1|	-	0.002	17.3	2.0	0.0026	16.9	2.0	1.1	1	0	0	1	1	1	1	Glucose	inhibited	division	protein	A
adh_short	PF00106.25	gi|345004585|ref|YP_004807438.1|	-	0.0023	17.4	0.6	0.0033	16.9	0.6	1.3	1	0	0	1	1	1	1	short	chain	dehydrogenase
2-Hacid_dh_C	PF02826.19	gi|345004585|ref|YP_004807438.1|	-	0.0026	17.2	0.1	0.0044	16.4	0.1	1.3	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
IlvN	PF07991.12	gi|345004585|ref|YP_004807438.1|	-	0.0028	17.3	0.2	0.0048	16.5	0.2	1.4	1	0	0	1	1	1	1	Acetohydroxy	acid	isomeroreductase,	NADPH-binding	domain
THF_DHG_CYH_C	PF02882.19	gi|345004585|ref|YP_004807438.1|	-	0.0029	17.0	0.3	0.011	15.1	0.3	2.0	1	1	0	1	1	1	1	Tetrahydrofolate	dehydrogenase/cyclohydrolase,	NAD(P)-binding	domain
Pyr_redox_2	PF07992.14	gi|345004585|ref|YP_004807438.1|	-	0.0064	15.8	0.4	0.0095	15.2	0.4	1.3	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
ApbA	PF02558.16	gi|345004585|ref|YP_004807438.1|	-	0.011	15.3	0.2	0.018	14.7	0.2	1.4	1	0	0	1	1	1	0	Ketopantoate	reductase	PanE/ApbA
NAD_binding_2	PF03446.15	gi|345004585|ref|YP_004807438.1|	-	0.021	15.0	0.3	0.037	14.2	0.2	1.5	1	1	0	1	1	1	0	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
Pyr_redox_3	PF13738.6	gi|345004585|ref|YP_004807438.1|	-	0.022	14.0	0.2	0.031	13.5	0.2	1.2	1	0	0	1	1	1	0	Pyridine	nucleotide-disulphide	oxidoreductase
Thi4	PF01946.17	gi|345004585|ref|YP_004807438.1|	-	0.031	13.5	0.2	0.051	12.8	0.2	1.3	1	0	0	1	1	1	0	Thi4	family
3HCDH_N	PF02737.18	gi|345004585|ref|YP_004807438.1|	-	0.041	13.8	0.2	0.065	13.1	0.2	1.4	1	0	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
NAD_binding_8	PF13450.6	gi|345004585|ref|YP_004807438.1|	-	0.066	13.4	2.3	0.18	12.0	2.3	1.8	1	0	0	1	1	1	0	NAD(P)-binding	Rossmann-like	domain
Pyr_redox	PF00070.27	gi|345004585|ref|YP_004807438.1|	-	0.3	11.7	1.9	0.82	10.3	1.6	1.8	1	1	1	2	2	2	0	Pyridine	nucleotide-disulphide	oxidoreductase
Na_Ca_ex	PF01699.24	gi|345004586|ref|YP_004807439.1|	-	5e-18	65.5	30.3	2e-10	40.8	9.0	2.5	3	0	0	3	3	3	2	Sodium/calcium	exchanger	protein
tRNA_deacylase	PF04414.12	gi|345004587|ref|YP_004807440.1|	-	3.3e-58	196.6	0.0	4.7e-58	196.1	0.0	1.2	1	0	0	1	1	1	1	D-aminoacyl-tRNA	deacylase
Tubulin	PF00091.25	gi|345004588|ref|YP_004807441.1|	-	2.1e-41	142.3	1.4	3.4e-41	141.6	1.4	1.3	1	0	0	1	1	1	1	Tubulin/FtsZ	family,	GTPase	domain
FtsZ_C	PF12327.8	gi|345004588|ref|YP_004807441.1|	-	7e-36	122.4	1.8	2.5e-35	120.6	1.8	2.0	1	0	0	1	1	1	1	FtsZ	family,	C-terminal	domain
NAD_binding_10	PF13460.6	gi|345004588|ref|YP_004807441.1|	-	0.012	15.5	0.4	0.012	15.5	0.4	2.3	2	1	1	3	3	3	0	NAD(P)H-binding
Tubulin_2	PF13809.6	gi|345004588|ref|YP_004807441.1|	-	0.14	11.3	9.9	0.52	9.4	3.5	2.6	1	1	1	2	2	2	0	Tubulin	like
SecE	PF00584.20	gi|345004590|ref|YP_004807443.1|	-	0.00095	19.1	0.1	0.0012	18.8	0.1	1.1	1	0	0	1	1	1	1	SecE/Sec61-gamma	subunits	of	protein	translocation	complex
Spt5-NGN	PF03439.13	gi|345004591|ref|YP_004807444.1|	-	4.4e-24	84.2	0.1	6.9e-24	83.6	0.1	1.3	1	0	0	1	1	1	1	Early	transcription	elongation	factor	of	RNA	pol	II,	NGN	section
KOW	PF00467.29	gi|345004591|ref|YP_004807444.1|	-	6.5e-08	32.3	1.0	1.2e-07	31.5	0.3	1.8	2	0	0	2	2	2	1	KOW	motif
Glyco_hydro_65C	PF03633.15	gi|345004591|ref|YP_004807444.1|	-	0.11	12.5	0.3	0.18	11.7	0.3	1.4	1	0	0	1	1	1	0	Glycosyl	hydrolase	family	65,	C-terminal	domain
NTP_transferase	PF00483.23	gi|345004592|ref|YP_004807445.1|	-	1.8e-38	132.5	0.0	2.2e-38	132.2	0.0	1.1	1	0	0	1	1	1	1	Nucleotidyl	transferase
NTP_transf_3	PF12804.7	gi|345004592|ref|YP_004807445.1|	-	2.5e-09	37.7	0.0	3.2e-09	37.3	0.0	1.2	1	0	0	1	1	1	1	MobA-like	NTP	transferase	domain
IspD	PF01128.19	gi|345004592|ref|YP_004807445.1|	-	0.056	13.2	0.0	0.16	11.7	0.0	1.7	2	0	0	2	2	2	0	2-C-methyl-D-erythritol	4-phosphate	cytidylyltransferase
Hexapep	PF00132.24	gi|345004592|ref|YP_004807445.1|	-	0.12	12.2	1.2	0.7	9.7	0.0	2.7	3	0	0	3	3	3	0	Bacterial	transferase	hexapeptide	(six	repeats)
HTH_5	PF01022.20	gi|345004593|ref|YP_004807446.1|	-	1.3e-05	25.0	0.0	1.8e-05	24.5	0.0	1.2	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_20	PF12840.7	gi|345004593|ref|YP_004807446.1|	-	0.00033	20.6	0.1	0.00052	20.0	0.1	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_24	PF13412.6	gi|345004593|ref|YP_004807446.1|	-	0.00074	19.0	0.0	0.0013	18.2	0.0	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
TrmB	PF01978.19	gi|345004593|ref|YP_004807446.1|	-	0.0026	17.6	0.0	0.0037	17.1	0.0	1.2	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
zf-trcl	PF13451.6	gi|345004593|ref|YP_004807446.1|	-	0.0053	16.6	1.0	0.023	14.6	0.1	2.0	2	0	0	2	2	2	1	Probable	zinc-ribbon	domain
DprA_WH	PF17782.1	gi|345004593|ref|YP_004807446.1|	-	0.015	15.4	0.0	0.026	14.6	0.0	1.3	1	0	0	1	1	1	0	DprA	winged	helix	domain
HTH_23	PF13384.6	gi|345004593|ref|YP_004807446.1|	-	0.015	15.1	0.0	0.022	14.6	0.0	1.3	1	0	0	1	1	1	0	Homeodomain-like	domain
HTH_IclR	PF09339.10	gi|345004593|ref|YP_004807446.1|	-	0.029	14.2	0.0	0.046	13.5	0.0	1.3	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
TackOD1	PF18551.1	gi|345004593|ref|YP_004807446.1|	-	0.056	13.1	0.1	0.065	12.9	0.1	1.3	1	1	0	1	1	1	0	Thaumarchaeal	output	domain	1
HTH_38	PF13936.6	gi|345004593|ref|YP_004807446.1|	-	0.098	12.4	0.0	0.15	11.8	0.0	1.2	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_10	PF04967.12	gi|345004593|ref|YP_004807446.1|	-	0.15	11.9	0.0	0.31	10.9	0.0	1.5	1	0	0	1	1	1	0	HTH	DNA	binding	domain
Rubredoxin_2	PF18073.1	gi|345004593|ref|YP_004807446.1|	-	9.3	6.1	6.7	17	5.2	0.3	2.2	2	0	0	2	2	2	0	Rubredoxin	metal	binding	domain
DHH	PF01368.20	gi|345004594|ref|YP_004807447.1|	-	1.4e-12	47.7	0.0	2.8e-12	46.7	0.0	1.5	1	0	0	1	1	1	1	DHH	family
DHHA1	PF02272.19	gi|345004594|ref|YP_004807447.1|	-	1.3e-11	45.1	2.0	2.7e-11	44.0	0.4	2.2	2	0	0	2	2	2	1	DHHA1	domain
TrkA_N	PF02254.18	gi|345004594|ref|YP_004807447.1|	-	2.8e-08	34.0	0.1	8.8e-08	32.4	0.1	1.9	1	1	0	1	1	1	1	TrkA-N	domain
NAD_binding_7	PF13241.6	gi|345004594|ref|YP_004807447.1|	-	0.11	13.0	0.1	0.38	11.2	0.0	1.9	2	0	0	2	2	2	0	Putative	NAD(P)-binding
CBS	PF00571.28	gi|345004595|ref|YP_004807448.1|	-	2.2e-25	88.9	3.0	6.6e-12	45.7	0.0	2.7	3	0	0	3	3	3	2	CBS	domain
ParBc	PF02195.18	gi|345004595|ref|YP_004807448.1|	-	1.8e-09	37.7	0.2	1.2e-08	35.1	0.2	2.2	1	1	0	1	1	1	1	ParB-like	nuclease	domain
ParBc_2	PF08857.11	gi|345004595|ref|YP_004807448.1|	-	0.028	14.5	0.0	0.11	12.6	0.0	1.9	1	1	0	1	1	1	0	Putative	ParB-like	nuclease
Lar_restr_allev	PF14354.6	gi|345004596|ref|YP_004807449.1|	-	3.1	8.2	6.7	7.6	7.0	6.7	1.6	1	0	0	1	1	1	0	Restriction	alleviation	protein	Lar
MTHFR_C	PF12225.8	gi|345004596|ref|YP_004807449.1|	-	8.5	6.1	9.3	1.2	8.8	2.0	2.7	2	1	1	3	3	3	0	Methylene-tetrahydrofolate	reductase	C	terminal
Peptidase_M24	PF00557.24	gi|345004597|ref|YP_004807450.1|	-	3.5e-67	226.2	0.8	4.3e-67	225.8	0.8	1.1	1	0	0	1	1	1	1	Metallopeptidase	family	M24
Creatinase_N	PF01321.18	gi|345004597|ref|YP_004807450.1|	-	7.2e-22	78.5	0.0	2.3e-21	76.8	0.0	1.8	2	0	0	2	2	2	1	Creatinase/Prolidase	N-terminal	domain
Biotin_carb_N	PF00289.22	gi|345004597|ref|YP_004807450.1|	-	0.094	13.3	0.0	0.17	12.5	0.0	1.3	1	0	0	1	1	1	0	Biotin	carboxylase,	N-terminal	domain
BAT	PF15915.5	gi|345004598|ref|YP_004807451.1|	-	7.6e-36	123.3	8.4	7.6e-36	123.3	8.4	2.9	2	1	0	2	2	2	1	GAF	and	HTH_10	associated	domain
HTH_10	PF04967.12	gi|345004598|ref|YP_004807451.1|	-	7.7e-22	76.9	0.0	2.6e-21	75.2	0.0	2.0	2	0	0	2	2	2	1	HTH	DNA	binding	domain
GAF_2	PF13185.6	gi|345004598|ref|YP_004807451.1|	-	9.8e-15	55.1	0.6	9.8e-15	55.1	0.6	2.2	2	1	0	2	2	2	1	GAF	domain
PAS_3	PF08447.12	gi|345004598|ref|YP_004807451.1|	-	9.5e-08	32.2	0.0	3.4e-07	30.5	0.0	1.9	2	0	0	2	2	2	1	PAS	fold
PAS_4	PF08448.10	gi|345004598|ref|YP_004807451.1|	-	3.6e-07	30.4	0.6	1.9e-06	28.1	0.0	2.5	2	1	1	3	3	3	1	PAS	fold
GAF	PF01590.26	gi|345004598|ref|YP_004807451.1|	-	3.8e-07	30.8	0.0	1.9e-06	28.5	0.0	2.1	2	0	0	2	2	2	1	GAF	domain
GAF_3	PF13492.6	gi|345004598|ref|YP_004807451.1|	-	2.3e-06	28.0	0.0	5.8e-06	26.7	0.0	1.7	1	0	0	1	1	1	1	GAF	domain
PAS_9	PF13426.7	gi|345004598|ref|YP_004807451.1|	-	6e-06	26.5	0.0	1.2e-05	25.5	0.0	1.5	1	0	0	1	1	1	1	PAS	domain
PAS	PF00989.25	gi|345004598|ref|YP_004807451.1|	-	1e-05	25.5	0.0	2.7e-05	24.1	0.0	1.7	1	0	0	1	1	1	1	PAS	fold
Sigma70_r4	PF04545.16	gi|345004598|ref|YP_004807451.1|	-	0.014	14.9	0.0	0.037	13.6	0.0	1.7	1	0	0	1	1	1	0	Sigma-70,	region	4
Collagen	PF01391.18	gi|345004598|ref|YP_004807451.1|	-	0.031	14.0	17.2	0.075	12.8	17.2	1.6	1	0	0	1	1	1	0	Collagen	triple	helix	repeat	(20	copies)
HTH_24	PF13412.6	gi|345004598|ref|YP_004807451.1|	-	0.055	13.0	0.0	0.11	12.0	0.0	1.6	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
Sigma70_r4_2	PF08281.12	gi|345004598|ref|YP_004807451.1|	-	0.12	12.1	0.0	0.84	9.4	0.0	2.1	2	0	0	2	2	2	0	Sigma-70,	region	4
UPF0122	PF04297.14	gi|345004598|ref|YP_004807451.1|	-	0.21	11.9	0.0	0.39	11.0	0.0	1.3	1	0	0	1	1	1	0	Putative	helix-turn-helix	protein,	YlxM	/	p13	like
OrfB_Zn_ribbon	PF07282.11	gi|345004600|ref|YP_004807453.1|	-	7.8e-22	77.0	0.8	1.4e-21	76.2	0.8	1.4	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
tRNA_edit	PF04073.15	gi|345004603|ref|YP_004807456.1|	-	8.3e-28	96.9	0.0	1e-27	96.7	0.0	1.1	1	0	0	1	1	1	1	Aminoacyl-tRNA	editing	domain
Proton_antipo_M	PF00361.20	gi|345004605|ref|YP_004807458.1|	-	2.3e-67	227.3	20.9	2.3e-67	227.3	20.9	1.6	2	0	0	2	2	2	1	Proton-conducting	membrane	transporter
Proton_antipo_N	PF00662.20	gi|345004605|ref|YP_004807458.1|	-	1.1	9.3	8.8	0.088	12.9	1.7	2.9	3	0	0	3	3	3	0	NADH-Ubiquinone	oxidoreductase	(complex	I),	chain	5	N-terminus
Proton_antipo_M	PF00361.20	gi|345004606|ref|YP_004807459.1|	-	1.1e-70	238.2	28.4	1.1e-70	238.2	28.4	1.7	2	0	0	2	2	2	1	Proton-conducting	membrane	transporter
Oxidored_q5_N	PF01059.17	gi|345004606|ref|YP_004807459.1|	-	6.9e-05	22.9	1.7	6.9e-05	22.9	1.7	2.9	3	0	0	3	3	3	1	NADH-ubiquinone	oxidoreductase	chain	4,	amino	terminus
Proton_antipo_M	PF00361.20	gi|345004607|ref|YP_004807460.1|	-	5.5e-76	255.6	19.8	1.7e-75	254.0	19.8	1.9	1	0	0	1	1	1	1	Proton-conducting	membrane	transporter
Proton_antipo_N	PF00662.20	gi|345004607|ref|YP_004807460.1|	-	3.3e-15	55.9	0.4	1.4e-14	53.8	0.1	2.4	2	0	0	2	2	2	1	NADH-Ubiquinone	oxidoreductase	(complex	I),	chain	5	N-terminus
Proton_antipo_C	PF01010.19	gi|345004607|ref|YP_004807460.1|	-	0.00057	19.6	0.0	0.003	17.2	0.0	2.0	1	1	0	1	1	1	1	NADH-dehyrogenase	subunit	F,	TMs,	(complex	I)	C-terminus
DUF4227	PF14004.6	gi|345004607|ref|YP_004807460.1|	-	0.16	12.0	0.5	0.76	9.8	0.0	2.5	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF4227)
Oxidored_q2	PF00420.24	gi|345004608|ref|YP_004807461.1|	-	5e-22	77.5	7.2	5.8e-22	77.3	7.2	1.0	1	0	0	1	1	1	1	NADH-ubiquinone/plastoquinone	oxidoreductase	chain	4L
Tetraspanin	PF00335.20	gi|345004608|ref|YP_004807461.1|	-	6.1	6.5	8.6	10	5.8	8.6	1.4	1	1	0	1	1	1	0	Tetraspanin	family
Oxidored_q3	PF00499.20	gi|345004609|ref|YP_004807462.1|	-	0.00015	21.5	1.3	0.00018	21.2	1.3	1.1	1	0	0	1	1	1	1	NADH-ubiquinone/plastoquinone	oxidoreductase	chain	6
PqiA	PF04403.13	gi|345004609|ref|YP_004807462.1|	-	0.062	13.1	1.8	0.36	10.6	0.2	2.1	2	0	0	2	2	2	0	Paraquat-inducible	protein	A
Oxidored_q3	PF00499.20	gi|345004610|ref|YP_004807463.1|	-	4.9e-18	65.2	3.3	4.9e-18	65.2	3.3	1.3	2	0	0	2	2	2	1	NADH-ubiquinone/plastoquinone	oxidoreductase	chain	6
TM2	PF05154.16	gi|345004610|ref|YP_004807463.1|	-	4.8	7.6	10.1	1	9.7	3.7	2.1	1	1	1	2	2	2	0	TM2	domain
Fer4	PF00037.27	gi|345004611|ref|YP_004807464.1|	-	1.2e-12	47.1	9.0	8.5e-07	28.5	2.4	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_7	PF12838.7	gi|345004611|ref|YP_004807464.1|	-	5.1e-12	46.2	10.1	8.3e-12	45.5	10.1	1.3	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_16	PF13484.6	gi|345004611|ref|YP_004807464.1|	-	7.7e-11	42.8	3.9	5e-06	27.4	0.1	2.2	2	0	0	2	2	2	2	4Fe-4S	double	cluster	binding	domain
Fer4_9	PF13187.6	gi|345004611|ref|YP_004807464.1|	-	4.1e-09	36.5	22.7	2.3e-07	30.9	11.9	1.8	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_21	PF14697.6	gi|345004611|ref|YP_004807464.1|	-	9.5e-09	35.3	8.5	1.4e-08	34.8	8.5	1.2	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_10	PF13237.6	gi|345004611|ref|YP_004807464.1|	-	2.6e-07	30.6	19.1	7.7e-06	25.9	11.3	1.8	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_6	PF12837.7	gi|345004611|ref|YP_004807464.1|	-	4.5e-06	26.5	13.2	0.0059	16.6	1.7	2.3	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_8	PF13183.6	gi|345004611|ref|YP_004807464.1|	-	1e-05	25.8	9.2	0.0012	19.3	11.6	2.2	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_17	PF13534.6	gi|345004611|ref|YP_004807464.1|	-	1.1e-05	25.9	12.4	0.0045	17.5	1.8	2.2	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_2	PF12797.7	gi|345004611|ref|YP_004807464.1|	-	2.5e-05	24.1	12.1	0.0022	18.0	1.8	2.4	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_4	PF12800.7	gi|345004611|ref|YP_004807464.1|	-	0.0002	21.6	13.9	0.0043	17.5	4.0	2.2	1	1	1	2	2	2	2	4Fe-4S	binding	domain
Fer4_3	PF12798.7	gi|345004611|ref|YP_004807464.1|	-	0.00023	21.9	14.0	0.0041	18.0	2.5	2.3	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_18	PF13746.6	gi|345004611|ref|YP_004807464.1|	-	0.0015	18.7	9.6	0.069	13.3	1.5	2.2	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_22	PF17179.4	gi|345004611|ref|YP_004807464.1|	-	0.0016	19.3	4.2	0.59	11.0	0.3	2.3	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
ETF_QO	PF05187.13	gi|345004611|ref|YP_004807464.1|	-	0.063	13.4	8.0	0.27	11.4	8.1	1.8	1	1	0	1	1	1	0	Electron	transfer	flavoprotein-ubiquinone	oxidoreductase,	4Fe-4S
Fer4_13	PF13370.6	gi|345004611|ref|YP_004807464.1|	-	0.35	11.4	14.1	0.4	11.2	1.1	2.7	3	0	0	3	3	2	0	4Fe-4S	single	cluster	domain	of	Ferredoxin	I
zf_PR_Knuckle	PF18445.1	gi|345004611|ref|YP_004807464.1|	-	6.4	6.7	7.9	23	4.9	0.7	2.5	2	0	0	2	2	2	0	PR	zinc	knuckle	motif
NADHdh	PF00146.21	gi|345004612|ref|YP_004807465.1|	-	1.4e-97	326.6	18.6	1.7e-97	326.3	18.6	1.0	1	0	0	1	1	1	1	NADH	dehydrogenase
PC_rep	PF01851.22	gi|345004612|ref|YP_004807465.1|	-	0.08	13.4	0.4	0.19	12.2	0.4	1.6	1	0	0	1	1	1	0	Proteasome/cyclosome	repeat
Complex1_49kDa	PF00346.19	gi|345004613|ref|YP_004807466.1|	-	1.2e-84	283.7	0.0	5.3e-83	278.2	0.0	2.1	1	1	0	1	1	1	1	Respiratory-chain	NADH	dehydrogenase,	49	Kd	subunit
Complex1_30kDa	PF00329.19	gi|345004613|ref|YP_004807466.1|	-	5.7e-33	114.1	0.3	1.2e-32	113.1	0.3	1.5	1	0	0	1	1	1	1	Respiratory-chain	NADH	dehydrogenase,	30	Kd	subunit
Oxidored_q6	PF01058.22	gi|345004614|ref|YP_004807467.1|	-	6.4e-22	77.8	0.2	9.3e-22	77.3	0.2	1.2	1	0	0	1	1	1	1	NADH	ubiquinone	oxidoreductase,	20	Kd	subunit
Oxidored_q4	PF00507.19	gi|345004615|ref|YP_004807468.1|	-	2.7e-31	107.7	0.2	3.2e-31	107.4	0.2	1.1	1	0	0	1	1	1	1	NADH-ubiquinone/plastoquinone	oxidoreductase,	chain	3
GAPT	PF11770.8	gi|345004615|ref|YP_004807468.1|	-	0.019	14.8	0.0	0.027	14.3	0.0	1.2	1	0	0	1	1	1	0	GRB2-binding	adapter	(GAPT)
TrbC	PF04956.13	gi|345004615|ref|YP_004807468.1|	-	0.58	10.4	6.3	0.95	9.7	0.8	2.3	2	0	0	2	2	2	0	TrbC/VIRB2	family
Ndr	PF03096.14	gi|345004616|ref|YP_004807469.1|	-	0.0051	15.5	0.0	0.007	15.1	0.0	1.1	1	0	0	1	1	1	1	Ndr	family
AIRC	PF00731.20	gi|345004618|ref|YP_004807471.1|	-	6e-50	168.7	0.0	7.1e-50	168.4	0.0	1.1	1	0	0	1	1	1	1	AIR	carboxylase
ATP-grasp	PF02222.22	gi|345004619|ref|YP_004807472.1|	-	7.3e-49	165.6	0.0	1.1e-48	165.0	0.0	1.3	1	0	0	1	1	1	1	ATP-grasp	domain
PurK_C	PF17769.1	gi|345004619|ref|YP_004807472.1|	-	1.2e-17	63.3	0.0	3e-17	62.0	0.0	1.7	2	0	0	2	2	2	1	Phosphoribosylaminoimidazole	carboxylase	C-terminal	domain
ATP-grasp_3	PF02655.14	gi|345004619|ref|YP_004807472.1|	-	1.6e-05	25.0	0.1	5.1e-05	23.4	0.0	1.9	2	1	0	2	2	2	1	ATP-grasp	domain
2-Hacid_dh_C	PF02826.19	gi|345004619|ref|YP_004807472.1|	-	5.6e-05	22.6	0.0	0.0001	21.7	0.0	1.4	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
3HCDH_N	PF02737.18	gi|345004619|ref|YP_004807472.1|	-	0.024	14.5	0.0	0.066	13.1	0.0	1.7	2	0	0	2	2	2	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
XdhC_C	PF13478.6	gi|345004619|ref|YP_004807472.1|	-	0.037	14.5	0.0	0.09	13.3	0.0	1.7	1	0	0	1	1	1	0	XdhC	Rossmann	domain
PMT_2	PF13231.6	gi|345004620|ref|YP_004807473.1|	-	1.5e-09	38.3	6.1	1.5e-09	38.3	6.1	2.1	2	0	0	2	2	2	1	Dolichyl-phosphate-mannose-protein	mannosyltransferase
PMT	PF02366.18	gi|345004620|ref|YP_004807473.1|	-	1.4e-05	24.8	7.9	0.00013	21.6	7.9	2.2	1	1	0	1	1	1	1	Dolichyl-phosphate-mannose-protein	mannosyltransferase
Usp	PF00582.26	gi|345004621|ref|YP_004807474.1|	-	5.1e-59	198.8	9.3	2.2e-29	102.8	0.6	2.1	2	0	0	2	2	2	2	Universal	stress	protein	family
DUF4838	PF16126.5	gi|345004622|ref|YP_004807475.1|	-	0.0043	16.5	0.0	0.006	16.0	0.0	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4838)
DICT	PF10069.9	gi|345004624|ref|YP_004807477.1|	-	1.4e-05	24.9	0.0	2.1e-05	24.3	0.0	1.3	1	0	0	1	1	1	1	Sensory	domain	in	DIguanylate	Cyclases	and	Two-component	system
PyrI	PF01948.18	gi|345004625|ref|YP_004807478.1|	-	7e-31	106.4	0.0	8.8e-31	106.0	0.0	1.1	1	0	0	1	1	1	1	Aspartate	carbamoyltransferase	regulatory	chain,	allosteric	domain
PyrI_C	PF02748.15	gi|345004625|ref|YP_004807478.1|	-	3.2e-13	49.4	0.5	5.8e-13	48.5	0.5	1.4	1	0	0	1	1	1	1	Aspartate	carbamoyltransferase	regulatory	chain,	metal	binding	domain
OTCace_N	PF02729.21	gi|345004626|ref|YP_004807479.1|	-	9.5e-44	149.0	0.0	7.9e-43	146.0	0.0	2.0	2	0	0	2	2	2	1	Aspartate/ornithine	carbamoyltransferase,	carbamoyl-P	binding	domain
OTCace	PF00185.24	gi|345004626|ref|YP_004807479.1|	-	3.6e-28	98.6	0.0	4.7e-28	98.2	0.0	1.1	1	0	0	1	1	1	1	Aspartate/ornithine	carbamoyltransferase,	Asp/Orn	binding	domain
MutS_V	PF00488.21	gi|345004627|ref|YP_004807480.1|	-	1.1e-06	28.8	0.0	1.9e-06	28.0	0.0	1.4	1	0	0	1	1	1	1	MutS	domain	V
AAA_28	PF13521.6	gi|345004627|ref|YP_004807480.1|	-	0.0016	18.7	1.8	0.016	15.4	0.1	2.8	2	1	0	2	2	2	1	AAA	domain
AAA_21	PF13304.6	gi|345004627|ref|YP_004807480.1|	-	0.0088	15.9	0.0	0.017	14.9	0.0	1.5	1	0	0	1	1	1	1	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
IMS_HHH	PF11798.8	gi|345004627|ref|YP_004807480.1|	-	0.033	14.5	0.1	0.084	13.2	0.1	1.8	1	0	0	1	1	1	0	IMS	family	HHH	motif
AAA_14	PF13173.6	gi|345004627|ref|YP_004807480.1|	-	0.07	13.2	0.0	0.14	12.2	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
AAA_23	PF13476.6	gi|345004627|ref|YP_004807480.1|	-	0.12	12.9	0.1	0.24	11.9	0.1	1.4	1	0	0	1	1	1	0	AAA	domain
HHH_5	PF14520.6	gi|345004627|ref|YP_004807480.1|	-	0.36	11.5	4.2	0.76	10.4	0.4	3.3	3	0	0	3	3	3	0	Helix-hairpin-helix	domain
DUF4404	PF14357.6	gi|345004627|ref|YP_004807480.1|	-	2	9.1	5.5	7.7	7.2	0.1	3.3	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF4404)
HrpF	PF06266.12	gi|345004627|ref|YP_004807480.1|	-	8.2	6.8	13.1	5.4	7.4	1.2	3.5	3	0	0	3	3	3	0	HrpF	protein
FYVE	PF01363.21	gi|345004630|ref|YP_004807483.1|	-	0.015	15.5	0.5	0.023	14.8	0.5	1.3	1	1	0	1	1	1	0	FYVE	zinc	finger
zf-AD	PF07776.15	gi|345004630|ref|YP_004807483.1|	-	0.025	14.8	0.4	0.069	13.4	0.1	1.7	1	1	1	2	2	2	0	Zinc-finger	associated	domain	(zf-AD)
DUF2688	PF10892.8	gi|345004630|ref|YP_004807483.1|	-	0.037	13.5	0.3	0.16	11.5	0.3	1.8	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF2688)
Zn-ribbon_8	PF09723.10	gi|345004630|ref|YP_004807483.1|	-	0.092	12.9	2.4	1.8	8.7	2.6	2.0	1	1	1	2	2	2	0	Zinc	ribbon	domain
DZR	PF12773.7	gi|345004630|ref|YP_004807483.1|	-	0.094	12.8	2.5	0.28	11.3	2.6	1.6	1	1	0	1	1	1	0	Double	zinc	ribbon
Sulf_transp	PF04143.14	gi|345004631|ref|YP_004807484.1|	-	4.1e-05	23.3	6.9	4.1e-05	23.3	6.9	2.1	1	1	1	2	2	2	2	Sulphur	transport
Sulf_transp	PF04143.14	gi|345004632|ref|YP_004807485.1|	-	3.4e-15	56.4	9.6	4.3e-15	56.1	9.6	1.1	1	0	0	1	1	1	1	Sulphur	transport
Vac14_Fab1_bd	PF12755.7	gi|345004632|ref|YP_004807485.1|	-	0.16	12.6	0.0	0.27	11.9	0.0	1.3	1	0	0	1	1	1	0	Vacuolar	14	Fab1-binding	region
SpoIIM	PF01944.17	gi|345004632|ref|YP_004807485.1|	-	1.3	9.0	8.0	0.98	9.4	0.7	2.5	2	1	0	2	2	2	0	Stage	II	sporulation	protein	M
MFS_1	PF07690.16	gi|345004633|ref|YP_004807486.1|	-	1.4e-32	113.0	65.5	4.6e-28	98.2	36.4	2.0	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
OATP	PF03137.20	gi|345004633|ref|YP_004807486.1|	-	0.06	11.6	9.7	0.017	13.4	0.9	2.8	2	1	0	2	2	2	0	Organic	Anion	Transporter	Polypeptide	(OATP)	family
DUF2614	PF11023.8	gi|345004633|ref|YP_004807486.1|	-	0.37	10.9	1.3	3.1	7.9	0.1	2.5	2	0	0	2	2	2	0	Zinc-ribbon	containing	domain
Acyl-CoA_dh_1	PF00441.24	gi|345004634|ref|YP_004807487.1|	-	1.3e-40	139.1	1.5	2.6e-40	138.1	1.5	1.5	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	C-terminal	domain
Acyl-CoA_dh_M	PF02770.19	gi|345004634|ref|YP_004807487.1|	-	8.1e-27	93.3	0.0	2e-26	92.0	0.0	1.7	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	middle	domain
Acyl-CoA_dh_N	PF02771.16	gi|345004634|ref|YP_004807487.1|	-	7.8e-24	84.5	1.7	2.1e-23	83.1	1.7	1.8	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	N-terminal	domain
Acyl-CoA_dh_2	PF08028.11	gi|345004634|ref|YP_004807487.1|	-	2.2e-17	63.6	1.1	2.2e-17	63.6	1.1	1.7	2	0	0	2	2	2	1	Acyl-CoA	dehydrogenase,	C-terminal	domain
AMP-binding	PF00501.28	gi|345004635|ref|YP_004807488.1|	-	1.3e-88	297.4	0.1	1.7e-88	297.1	0.1	1.1	1	0	0	1	1	1	1	AMP-binding	enzyme
AMP-binding_C	PF13193.6	gi|345004635|ref|YP_004807488.1|	-	1.6e-15	57.8	0.1	4.9e-15	56.3	0.2	1.8	2	0	0	2	2	2	1	AMP-binding	enzyme	C-terminal	domain
DRTGG	PF07085.12	gi|345004635|ref|YP_004807488.1|	-	0.1	12.4	0.0	3.4	7.5	0.0	2.8	3	0	0	3	3	3	0	DRTGG	domain
Glyoxalase_4	PF13669.6	gi|345004637|ref|YP_004807490.1|	-	1.2e-20	73.7	0.0	1.5e-20	73.5	0.0	1.0	1	0	0	1	1	1	1	Glyoxalase/Bleomycin	resistance	protein/Dioxygenase	superfamily
Glyoxalase	PF00903.25	gi|345004637|ref|YP_004807490.1|	-	1.9e-12	47.5	0.1	2.1e-12	47.3	0.1	1.0	1	0	0	1	1	1	1	Glyoxalase/Bleomycin	resistance	protein/Dioxygenase	superfamily
Glyoxalase_3	PF13468.6	gi|345004637|ref|YP_004807490.1|	-	1.7e-11	44.6	1.2	1.9e-11	44.4	1.2	1.1	1	0	0	1	1	1	1	Glyoxalase-like	domain
Glyoxalase_6	PF18029.1	gi|345004637|ref|YP_004807490.1|	-	0.00047	20.9	0.4	0.00079	20.2	0.4	1.3	1	1	0	1	1	1	1	Glyoxalase-like	domain
Glyoxalase_5	PF14696.6	gi|345004637|ref|YP_004807490.1|	-	0.095	12.9	0.0	0.16	12.1	0.0	1.5	1	1	0	1	1	1	0	Hydroxyphenylpyruvate	dioxygenase,	HPPD,	N-terminal
MM_CoA_mutase	PF01642.22	gi|345004639|ref|YP_004807492.1|	-	7.5e-223	740.7	3.1	9.2e-223	740.4	3.1	1.0	1	0	0	1	1	1	1	Methylmalonyl-CoA	mutase
DUF547	PF04784.14	gi|345004639|ref|YP_004807492.1|	-	0.023	14.7	0.0	0.05	13.6	0.0	1.6	1	0	0	1	1	1	0	Protein	of	unknown	function,	DUF547
CopD	PF05425.13	gi|345004640|ref|YP_004807493.1|	-	5.2e-06	26.8	6.7	5.2e-06	26.8	6.7	1.7	1	1	0	1	1	1	1	Copper	resistance	protein	D
Methyltransf_3	PF01596.17	gi|345004641|ref|YP_004807494.1|	-	3e-17	62.5	0.0	4.1e-17	62.1	0.0	1.2	1	0	0	1	1	1	1	O-methyltransferase
Methyltransf_24	PF13578.6	gi|345004641|ref|YP_004807494.1|	-	7.1e-11	43.1	0.1	1.5e-10	42.0	0.0	1.6	2	0	0	2	2	2	1	Methyltransferase	domain
Methyltransf_25	PF13649.6	gi|345004641|ref|YP_004807494.1|	-	5.3e-06	27.0	0.0	1e-05	26.1	0.0	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
Spermine_synth	PF01564.17	gi|345004641|ref|YP_004807494.1|	-	0.0032	16.9	0.0	0.0044	16.5	0.0	1.2	1	0	0	1	1	1	1	Spermine/spermidine	synthase	domain
MTS	PF05175.14	gi|345004641|ref|YP_004807494.1|	-	0.0096	15.5	0.0	0.013	15.0	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	small	domain
CMAS	PF02353.20	gi|345004641|ref|YP_004807494.1|	-	0.013	14.8	0.0	0.016	14.5	0.0	1.1	1	0	0	1	1	1	0	Mycolic	acid	cyclopropane	synthetase
Methyltransf_18	PF12847.7	gi|345004641|ref|YP_004807494.1|	-	0.05	13.5	0.0	0.081	12.9	0.0	1.3	1	0	0	1	1	1	0	Methyltransferase	domain
Methyltransf_12	PF08242.12	gi|345004641|ref|YP_004807494.1|	-	0.064	14.0	0.0	0.12	13.2	0.0	1.4	1	0	0	1	1	1	0	Methyltransferase	domain
Peptidase_S15	PF02129.18	gi|345004642|ref|YP_004807495.1|	-	1.3e-52	179.1	1.3	1.9e-52	178.5	1.3	1.3	1	0	0	1	1	1	1	X-Pro	dipeptidyl-peptidase	(S15	family)
PepX_C	PF08530.10	gi|345004642|ref|YP_004807495.1|	-	3.2e-39	135.2	0.1	5.5e-39	134.4	0.1	1.4	1	0	0	1	1	1	1	X-Pro	dipeptidyl-peptidase	C-terminal	non-catalytic	domain
Peptidase_S9	PF00326.21	gi|345004642|ref|YP_004807495.1|	-	0.0024	17.4	2.0	0.0049	16.4	1.1	2.0	2	0	0	2	2	2	1	Prolyl	oligopeptidase	family
Creatininase	PF02633.14	gi|345004643|ref|YP_004807496.1|	-	2.4e-68	230.2	3.5	2.7e-68	230.0	3.5	1.0	1	0	0	1	1	1	1	Creatinine	amidohydrolase
NAC	PF01849.18	gi|345004644|ref|YP_004807497.1|	-	3e-19	68.7	0.5	6.2e-19	67.7	0.3	1.6	2	0	0	2	2	2	1	NAC	domain
UBA_4	PF14555.6	gi|345004644|ref|YP_004807497.1|	-	0.00034	20.4	0.0	0.00069	19.4	0.0	1.5	1	0	0	1	1	1	1	UBA-like	domain
GCD14	PF08704.10	gi|345004645|ref|YP_004807498.1|	-	4.8e-18	65.7	0.0	1.3e-14	54.5	0.0	2.1	1	1	1	2	2	2	2	tRNA	methyltransferase	complex	GCD14	subunit
Methyltransf_31	PF13847.6	gi|345004645|ref|YP_004807498.1|	-	3.7e-08	33.3	0.0	4.8e-08	32.9	0.0	1.1	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.6	gi|345004645|ref|YP_004807498.1|	-	1.2e-07	32.3	0.4	1.9e-07	31.7	0.4	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_11	PF08241.12	gi|345004645|ref|YP_004807498.1|	-	3.5e-06	27.6	0.2	5.8e-06	26.9	0.2	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_3	PF01596.17	gi|345004645|ref|YP_004807498.1|	-	6.1e-06	25.6	0.0	7.7e-06	25.2	0.0	1.1	1	0	0	1	1	1	1	O-methyltransferase
MTS	PF05175.14	gi|345004645|ref|YP_004807498.1|	-	1e-05	25.1	0.1	1.8e-05	24.4	0.1	1.4	1	0	0	1	1	1	1	Methyltransferase	small	domain
Methyltransf_23	PF13489.6	gi|345004645|ref|YP_004807498.1|	-	2e-05	24.5	0.0	6.4e-05	22.8	0.0	1.7	1	1	0	1	1	1	1	Methyltransferase	domain
PrmA	PF06325.13	gi|345004645|ref|YP_004807498.1|	-	2.8e-05	23.7	0.4	3.6e-05	23.3	0.4	1.1	1	0	0	1	1	1	1	Ribosomal	protein	L11	methyltransferase	(PrmA)
Methyltransf_24	PF13578.6	gi|345004645|ref|YP_004807498.1|	-	4.2e-05	24.5	0.8	6.5e-05	23.9	0.2	1.6	2	0	0	2	2	1	1	Methyltransferase	domain
Cons_hypoth95	PF03602.15	gi|345004645|ref|YP_004807498.1|	-	0.0002	21.1	0.0	0.00031	20.4	0.0	1.4	1	1	0	1	1	1	1	Conserved	hypothetical	protein	95
ADH_zinc_N	PF00107.26	gi|345004645|ref|YP_004807498.1|	-	0.00022	21.2	0.8	0.00031	20.7	0.8	1.3	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
Methyltransf_12	PF08242.12	gi|345004645|ref|YP_004807498.1|	-	0.00022	21.9	0.1	0.00044	20.9	0.1	1.5	1	1	0	1	1	1	1	Methyltransferase	domain
RrnaAD	PF00398.20	gi|345004645|ref|YP_004807498.1|	-	0.0015	17.7	0.0	0.0021	17.2	0.0	1.1	1	0	0	1	1	1	1	Ribosomal	RNA	adenine	dimethylase
PCMT	PF01135.19	gi|345004645|ref|YP_004807498.1|	-	0.0058	16.4	0.2	0.0076	16.0	0.2	1.1	1	0	0	1	1	1	1	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
Methyltransf_15	PF09445.10	gi|345004645|ref|YP_004807498.1|	-	0.0079	15.8	0.0	0.011	15.4	0.0	1.1	1	0	0	1	1	1	1	RNA	cap	guanine-N2	methyltransferase
Methyltransf_18	PF12847.7	gi|345004645|ref|YP_004807498.1|	-	0.0083	16.1	0.0	0.013	15.4	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
SBP_bac_11	PF13531.6	gi|345004645|ref|YP_004807498.1|	-	0.012	15.3	0.0	0.016	14.9	0.0	1.2	1	0	0	1	1	1	0	Bacterial	extracellular	solute-binding	protein
DUF726	PF05277.12	gi|345004645|ref|YP_004807498.1|	-	0.03	13.2	0.1	0.042	12.8	0.1	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF726)
Methyltransf_16	PF10294.9	gi|345004645|ref|YP_004807498.1|	-	0.093	12.5	0.0	0.13	12.0	0.0	1.1	1	0	0	1	1	1	0	Lysine	methyltransferase
Met_10	PF02475.16	gi|345004645|ref|YP_004807498.1|	-	0.13	12.0	0.0	0.18	11.6	0.0	1.2	1	0	0	1	1	1	0	Met-10+	like-protein
TFIIS_C	PF01096.18	gi|345004646|ref|YP_004807499.1|	-	5.2e-18	64.6	5.8	5.2e-18	64.6	5.8	2.9	3	1	0	3	3	3	1	Transcription	factor	S-II	(TFIIS)
RNA_POL_M_15KD	PF02150.16	gi|345004646|ref|YP_004807499.1|	-	5.9e-07	29.3	13.2	5.4e-06	26.2	1.2	3.2	3	0	0	3	3	3	2	RNA	polymerases	M/15	Kd	subunit
OrfB_Zn_ribbon	PF07282.11	gi|345004646|ref|YP_004807499.1|	-	4.2e-05	23.4	13.0	0.029	14.3	1.8	2.4	2	1	0	2	2	2	2	Putative	transposase	DNA-binding	domain
zf-RING_7	PF02591.15	gi|345004646|ref|YP_004807499.1|	-	0.00014	21.9	2.0	4.5	7.6	0.1	3.4	3	0	0	3	3	3	1	C4-type	zinc	ribbon	domain
TF_Zn_Ribbon	PF08271.12	gi|345004646|ref|YP_004807499.1|	-	0.00028	20.4	1.9	0.00028	20.4	1.9	3.2	2	2	1	3	3	3	2	TFIIB	zinc-binding
Zn_Tnp_IS1595	PF12760.7	gi|345004646|ref|YP_004807499.1|	-	0.0017	18.3	1.0	0.0017	18.3	1.0	2.1	2	1	0	2	2	2	1	Transposase	zinc-ribbon	domain
DZR	PF12773.7	gi|345004646|ref|YP_004807499.1|	-	0.0032	17.5	12.0	1.3	9.1	12.7	2.9	1	1	0	1	1	1	1	Double	zinc	ribbon
zf-ribbon_3	PF13248.6	gi|345004646|ref|YP_004807499.1|	-	0.0059	16.0	11.8	0.16	11.4	0.1	3.5	3	1	0	3	3	3	2	zinc-ribbon	domain
zf_UBZ	PF18439.1	gi|345004646|ref|YP_004807499.1|	-	0.021	14.4	7.0	1.5	8.5	0.1	3.3	3	0	0	3	3	3	0	Ubiquitin-Binding	Zinc	Finger
zf-ZPR1	PF03367.13	gi|345004646|ref|YP_004807499.1|	-	0.032	14.1	0.3	0.032	14.1	0.3	1.7	2	0	0	2	2	1	0	ZPR1	zinc-finger	domain
zinc_ribbon_2	PF13240.6	gi|345004646|ref|YP_004807499.1|	-	0.037	13.7	13.2	1.3	8.8	0.4	3.6	4	0	0	4	4	3	0	zinc-ribbon	domain
zf-RING_4	PF14570.6	gi|345004646|ref|YP_004807499.1|	-	0.042	13.7	9.7	0.77	9.6	0.1	3.3	3	0	0	3	3	3	0	RING/Ubox	like	zinc-binding	domain
zf-IS66	PF13005.7	gi|345004646|ref|YP_004807499.1|	-	0.056	13.9	9.9	1.7	9.1	0.1	3.4	3	1	0	3	3	3	0	zinc-finger	binding	domain	of	transposase	IS66
DUF2387	PF09526.10	gi|345004646|ref|YP_004807499.1|	-	0.062	13.4	7.8	0.61	10.3	2.0	2.4	2	0	0	2	2	2	0	Probable	metal-binding	protein	(DUF2387)
DUF3268	PF11672.8	gi|345004646|ref|YP_004807499.1|	-	0.072	13.4	0.4	0.072	13.4	0.4	1.9	2	0	0	2	2	2	0	zinc-finger-containing	domain
Nudix_N_2	PF14803.6	gi|345004646|ref|YP_004807499.1|	-	0.072	13.0	11.6	0.66	9.9	1.7	3.1	3	1	0	3	3	2	0	Nudix	N-terminal
YhfH	PF14149.6	gi|345004646|ref|YP_004807499.1|	-	0.079	13.0	11.9	6.3	6.9	3.5	3.4	3	0	0	3	3	3	0	YhfH-like	protein
zinc_ribbon_4	PF13717.6	gi|345004646|ref|YP_004807499.1|	-	0.1	12.6	4.4	7.2	6.6	0.3	2.9	3	0	0	3	3	3	0	zinc-ribbon	domain
zf-ACC	PF17848.1	gi|345004646|ref|YP_004807499.1|	-	0.11	12.5	8.6	7.3	6.8	0.4	3.3	3	0	0	3	3	3	0	Acetyl-coA	carboxylase	zinc	finger	domain
UPF0547	PF10571.9	gi|345004646|ref|YP_004807499.1|	-	0.18	11.9	18.7	1.1	9.4	0.3	4.0	4	0	0	4	4	4	0	Uncharacterised	protein	family	UPF0547
zf-RRN7	PF11781.8	gi|345004646|ref|YP_004807499.1|	-	0.32	10.7	8.9	13	5.6	0.0	3.8	4	0	0	4	4	4	0	Zinc-finger	of	RNA-polymerase	I-specific	TFIIB,	Rrn7
DNA_RNApol_7kD	PF03604.13	gi|345004646|ref|YP_004807499.1|	-	0.49	10.1	11.5	1.9	8.2	0.1	3.5	3	1	0	3	3	3	0	DNA	directed	RNA	polymerase,	7	kDa	subunit
Ogr_Delta	PF04606.12	gi|345004646|ref|YP_004807499.1|	-	0.63	10.1	8.7	0.37	10.8	2.4	2.8	2	2	0	2	2	2	0	Ogr/Delta-like	zinc	finger
Zn_Tnp_IS91	PF14319.6	gi|345004646|ref|YP_004807499.1|	-	0.89	9.6	8.4	0.18	11.9	1.6	2.8	1	1	0	2	2	2	0	Transposase	zinc-binding	domain
Rubredoxin	PF00301.20	gi|345004646|ref|YP_004807499.1|	-	0.99	9.5	13.5	4.6	7.3	0.1	3.7	3	1	1	4	4	4	0	Rubredoxin
HypA	PF01155.19	gi|345004646|ref|YP_004807499.1|	-	3	7.9	10.8	1.6e+03	-0.9	11.0	2.9	1	1	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
Rubredoxin_2	PF18073.1	gi|345004646|ref|YP_004807499.1|	-	3.2	7.6	15.1	8.2	6.3	0.4	4.0	4	0	0	4	4	4	0	Rubredoxin	metal	binding	domain
PADR1	PF08063.12	gi|345004646|ref|YP_004807499.1|	-	3.3	7.6	11.3	4.9	7.0	1.9	2.8	2	1	0	2	2	2	0	PADR1	(NUC008)	domain
CpXC	PF14353.6	gi|345004646|ref|YP_004807499.1|	-	9.6	6.3	9.6	5	7.2	0.2	3.1	1	1	2	3	3	3	0	CpXC	protein
HypA	PF01155.19	gi|345004648|ref|YP_004807501.1|	-	0.00012	22.0	0.5	0.00013	21.9	0.5	1.1	1	0	0	1	1	1	1	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
RNA_POL_M_15KD	PF02150.16	gi|345004648|ref|YP_004807501.1|	-	0.053	13.4	0.4	0.053	13.4	0.4	1.9	1	1	1	2	2	2	0	RNA	polymerases	M/15	Kd	subunit
Ribosomal_L37e	PF01907.19	gi|345004648|ref|YP_004807501.1|	-	0.075	13.2	2.2	0.096	12.9	2.2	1.2	1	0	0	1	1	1	0	Ribosomal	protein	L37e
Zn-ribbon_8	PF09723.10	gi|345004648|ref|YP_004807501.1|	-	0.28	11.3	8.8	0.56	10.4	8.8	1.5	1	1	0	1	1	1	0	Zinc	ribbon	domain
zf-TFIIB	PF13453.6	gi|345004648|ref|YP_004807501.1|	-	0.39	10.1	11.0	0.11	11.9	2.5	2.3	1	1	1	2	2	2	0	Transcription	factor	zinc-finger
ECH_1	PF00378.20	gi|345004649|ref|YP_004807502.1|	-	5.9e-59	199.4	0.0	7.2e-59	199.1	0.0	1.0	1	0	0	1	1	1	1	Enoyl-CoA	hydratase/isomerase
ECH_2	PF16113.5	gi|345004649|ref|YP_004807502.1|	-	2.1e-34	119.5	0.0	2.7e-34	119.1	0.0	1.2	1	0	0	1	1	1	1	Enoyl-CoA	hydratase/isomerase
SDH_sah	PF01972.16	gi|345004649|ref|YP_004807502.1|	-	0.0024	16.9	0.0	0.0034	16.4	0.0	1.2	1	0	0	1	1	1	1	Serine	dehydrogenase	proteinase
DUF3107	PF11305.8	gi|345004649|ref|YP_004807502.1|	-	0.066	13.5	0.3	0.26	11.6	0.0	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3107)
Flavin_Reduct	PF01613.18	gi|345004650|ref|YP_004807503.1|	-	1.5e-18	67.3	0.0	2.1e-18	66.8	0.0	1.1	1	0	0	1	1	1	1	Flavin	reductase	like	domain
GAF	PF01590.26	gi|345004651|ref|YP_004807504.1|	-	0.036	14.7	0.0	0.058	14.0	0.0	1.4	1	0	0	1	1	1	0	GAF	domain
DUF21	PF01595.20	gi|345004652|ref|YP_004807505.1|	-	2.3e-36	125.2	6.0	2.7e-36	124.9	6.0	1.0	1	0	0	1	1	1	1	Cyclin	M	transmembrane	N-terminal	domain
SLATT_5	PF18160.1	gi|345004652|ref|YP_004807505.1|	-	0.39	10.0	0.0	0.39	10.0	0.0	1.6	2	0	0	2	2	2	0	SMODS	and	SLOG-associating	2TM	effector	domain	family	5
GHMP_kinases_N	PF00288.26	gi|345004653|ref|YP_004807506.1|	-	0.0036	17.5	8.1	0.024	14.9	8.1	2.4	1	1	0	1	1	1	1	GHMP	kinases	N	terminal	domain
MDD_C	PF18376.1	gi|345004653|ref|YP_004807506.1|	-	0.0084	15.9	0.0	0.013	15.2	0.0	1.2	1	0	0	1	1	1	1	Mevalonate	5-diphosphate	decarboxylase	C-terminal	domain
NAD_kinase	PF01513.21	gi|345004654|ref|YP_004807507.1|	-	9.8e-48	162.8	0.0	1.1e-47	162.6	0.0	1.0	1	0	0	1	1	1	1	ATP-NAD	kinase
DAGK_cat	PF00781.24	gi|345004654|ref|YP_004807507.1|	-	1.1e-06	28.3	0.9	2.7e-06	27.0	0.1	2.0	2	0	0	2	2	2	1	Diacylglycerol	kinase	catalytic	domain
Peripla_BP_6	PF13458.6	gi|345004654|ref|YP_004807507.1|	-	0.0019	17.9	1.3	0.003	17.3	0.3	1.7	2	0	0	2	2	2	1	Periplasmic	binding	protein
SPOR	PF05036.13	gi|345004654|ref|YP_004807507.1|	-	0.034	14.5	0.2	0.94	9.9	0.0	3.2	3	0	0	3	3	3	0	Sporulation	related	domain
MoCF_biosynth	PF00994.24	gi|345004656|ref|YP_004807509.1|	-	2.7e-36	124.4	0.3	3.9e-36	123.9	0.3	1.2	1	0	0	1	1	1	1	Probable	molybdopterin	binding	domain
RNase_II_C_S1	PF18614.1	gi|345004656|ref|YP_004807509.1|	-	0.036	14.0	2.4	0.2	11.6	0.0	2.8	2	1	1	3	3	3	0	RNase	II-type	exonuclease	C-terminal	S1	domain
CinA_KH	PF18146.1	gi|345004656|ref|YP_004807509.1|	-	0.048	13.8	0.2	0.1	12.7	0.2	1.6	1	0	0	1	1	1	0	Damage-inducible	protein	CinA	KH	domain
Methyltransf_11	PF08241.12	gi|345004657|ref|YP_004807510.1|	-	3.1e-19	69.4	0.1	5.3e-19	68.7	0.1	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.6	gi|345004657|ref|YP_004807510.1|	-	1.5e-18	67.3	0.0	3e-18	66.3	0.0	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.6	gi|345004657|ref|YP_004807510.1|	-	3.1e-10	40.1	0.0	3.9e-10	39.8	0.0	1.1	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.12	gi|345004657|ref|YP_004807510.1|	-	3.2e-10	40.6	0.0	5.8e-10	39.8	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.6	gi|345004657|ref|YP_004807510.1|	-	5.1e-10	39.3	0.0	6.8e-10	38.9	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Ubie_methyltran	PF01209.18	gi|345004657|ref|YP_004807510.1|	-	6.2e-08	32.3	0.0	8.2e-08	31.9	0.0	1.1	1	0	0	1	1	1	1	ubiE/COQ5	methyltransferase	family
Methyltransf_9	PF08003.11	gi|345004657|ref|YP_004807510.1|	-	0.0009	18.3	0.0	0.001	18.1	0.0	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1698)
PCMT	PF01135.19	gi|345004657|ref|YP_004807510.1|	-	0.0088	15.8	0.0	0.011	15.5	0.0	1.2	1	0	0	1	1	1	1	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
TPMT	PF05724.11	gi|345004657|ref|YP_004807510.1|	-	0.0092	15.7	0.0	0.015	15.0	0.0	1.5	1	1	0	1	1	1	1	Thiopurine	S-methyltransferase	(TPMT)
Methyltransf_8	PF05148.15	gi|345004657|ref|YP_004807510.1|	-	0.012	15.5	0.0	0.049	13.5	0.0	1.8	1	1	0	1	1	1	0	Hypothetical	methyltransferase
MTS	PF05175.14	gi|345004657|ref|YP_004807510.1|	-	0.027	14.0	0.0	0.037	13.6	0.0	1.3	1	0	0	1	1	1	0	Methyltransferase	small	domain
MetW	PF07021.12	gi|345004657|ref|YP_004807510.1|	-	0.032	13.8	0.0	0.04	13.5	0.0	1.2	1	0	0	1	1	1	0	Methionine	biosynthesis	protein	MetW
Methyltransf_32	PF13679.6	gi|345004657|ref|YP_004807510.1|	-	0.048	13.7	0.0	0.072	13.1	0.0	1.3	1	0	0	1	1	1	0	Methyltransferase	domain
NodS	PF05401.11	gi|345004657|ref|YP_004807510.1|	-	0.063	12.9	0.0	0.09	12.4	0.0	1.2	1	0	0	1	1	1	0	Nodulation	protein	S	(NodS)
CMAS	PF02353.20	gi|345004657|ref|YP_004807510.1|	-	0.12	11.7	0.0	0.15	11.4	0.0	1.1	1	0	0	1	1	1	0	Mycolic	acid	cyclopropane	synthetase
TehB	PF03848.14	gi|345004657|ref|YP_004807510.1|	-	0.14	11.5	0.0	0.2	11.0	0.0	1.4	1	0	0	1	1	1	0	Tellurite	resistance	protein	TehB
T2SSF	PF00482.23	gi|345004658|ref|YP_004807511.1|	-	8.3e-36	122.7	7.7	6.4e-20	71.4	1.6	2.7	2	0	0	2	2	2	2	Type	II	secretion	system	(T2SS),	protein	F
UPF0014	PF03649.13	gi|345004658|ref|YP_004807511.1|	-	0.012	15.0	1.1	0.012	15.0	1.1	2.6	3	0	0	3	3	3	0	Uncharacterised	protein	family	(UPF0014)
DUF2207	PF09972.9	gi|345004658|ref|YP_004807511.1|	-	0.072	11.9	0.6	1.1	7.9	0.0	2.5	3	0	0	3	3	3	0	Predicted	membrane	protein	(DUF2207)
T2SSE	PF00437.20	gi|345004659|ref|YP_004807512.1|	-	5e-47	160.2	0.0	7.3e-47	159.7	0.0	1.2	1	0	0	1	1	1	1	Type	II/IV	secretion	system	protein
AAA_7	PF12775.7	gi|345004659|ref|YP_004807512.1|	-	0.13	11.8	0.0	0.27	10.7	0.0	1.5	1	0	0	1	1	1	0	P-loop	containing	dynein	motor	region
RHH_1	PF01402.21	gi|345004659|ref|YP_004807512.1|	-	0.16	12.0	1.7	0.31	11.0	0.5	2.2	2	0	0	2	2	2	0	Ribbon-helix-helix	protein,	copG	family
AAA_29	PF13555.6	gi|345004659|ref|YP_004807512.1|	-	0.19	11.5	0.0	0.4	10.5	0.0	1.4	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
DUF1328	PF07043.13	gi|345004662|ref|YP_004807515.1|	-	9.9e-13	48.1	17.9	9.9e-13	48.1	17.9	1.6	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF1328)
TauE	PF01925.19	gi|345004662|ref|YP_004807515.1|	-	0.013	15.2	10.2	0.013	15.1	10.2	1.0	1	0	0	1	1	1	0	Sulfite	exporter	TauE/SafE
Tetraspanin	PF00335.20	gi|345004662|ref|YP_004807515.1|	-	0.36	10.5	3.9	0.34	10.6	3.9	1.0	1	0	0	1	1	1	0	Tetraspanin	family
FA_desaturase	PF00487.24	gi|345004662|ref|YP_004807515.1|	-	1.3	8.9	4.0	1.2	8.9	4.0	1.0	1	0	0	1	1	1	0	Fatty	acid	desaturase
DUF131	PF01998.17	gi|345004662|ref|YP_004807515.1|	-	2	8.2	12.7	1.6	8.4	5.1	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	DUF131
Glycophorin_A	PF01102.18	gi|345004662|ref|YP_004807515.1|	-	5.2	7.4	5.5	0.56	10.5	0.2	1.9	2	0	0	2	2	2	0	Glycophorin	A
Peroxin-13_N	PF04088.13	gi|345004663|ref|YP_004807516.1|	-	0.012	15.9	0.6	0.051	13.9	0.1	2.1	2	0	0	2	2	2	0	Peroxin	13,	N-terminal	region
Abhydrolase_3	PF07859.13	gi|345004664|ref|YP_004807517.1|	-	8.1e-68	228.4	0.5	1.1e-67	228.0	0.5	1.2	1	0	0	1	1	1	1	alpha/beta	hydrolase	fold
COesterase	PF00135.28	gi|345004664|ref|YP_004807517.1|	-	2.7e-07	29.8	0.2	7.3e-07	28.4	0.2	1.6	1	1	0	1	1	1	1	Carboxylesterase	family
AXE1	PF05448.12	gi|345004664|ref|YP_004807517.1|	-	0.19	10.4	0.0	10	4.7	0.0	2.1	2	0	0	2	2	2	0	Acetyl	xylan	esterase	(AXE1)
AGS_C	PF18134.1	gi|345004665|ref|YP_004807518.1|	-	0.055	13.5	0.0	0.071	13.1	0.0	1.3	1	0	0	1	1	1	0	Adenylyl/Guanylyl	and	SMODS	C-terminal	sensor	domain
DAGK_cat	PF00781.24	gi|345004666|ref|YP_004807519.1|	-	7.9e-26	90.1	0.2	1.2e-25	89.5	0.2	1.3	1	0	0	1	1	1	1	Diacylglycerol	kinase	catalytic	domain
NAD_kinase	PF01513.21	gi|345004666|ref|YP_004807519.1|	-	0.00052	19.3	0.4	0.001	18.3	0.2	1.6	2	0	0	2	2	2	1	ATP-NAD	kinase
DDE_Tnp_IS66	PF03050.14	gi|345004667|ref|YP_004807520.1|	-	7e-49	166.8	0.2	7e-49	166.8	0.2	2.0	2	1	0	2	2	2	1	Transposase	IS66	family
ZapB	PF06005.12	gi|345004667|ref|YP_004807520.1|	-	3e-09	37.2	6.3	9.7e-09	35.6	6.3	1.9	1	0	0	1	1	1	1	Cell	division	protein	ZapB
zf-IS66	PF13005.7	gi|345004667|ref|YP_004807520.1|	-	1.9e-05	25.0	4.3	4.5e-05	23.8	4.3	1.7	1	0	0	1	1	1	1	zinc-finger	binding	domain	of	transposase	IS66
YabA	PF06156.13	gi|345004667|ref|YP_004807520.1|	-	4.3e-05	24.1	4.2	0.00014	22.4	4.2	1.8	1	0	0	1	1	1	1	Initiation	control	protein	YabA
CASP_C	PF08172.12	gi|345004667|ref|YP_004807520.1|	-	0.00024	20.6	1.9	0.00039	19.9	1.9	1.2	1	0	0	1	1	1	1	CASP	C	terminal
JIP_LZII	PF16471.5	gi|345004667|ref|YP_004807520.1|	-	0.00056	20.0	3.4	0.0012	19.0	3.4	1.6	1	0	0	1	1	1	1	JNK-interacting	protein	leucine	zipper	II
bZIP_1	PF00170.21	gi|345004667|ref|YP_004807520.1|	-	0.0018	18.3	7.8	0.004	17.2	7.8	1.6	1	0	0	1	1	1	1	bZIP	transcription	factor
DDE_Tnp_IS240	PF13610.6	gi|345004667|ref|YP_004807520.1|	-	0.003	17.8	0.8	0.013	15.7	0.0	2.3	2	1	0	2	2	2	1	DDE	domain
SlyX	PF04102.12	gi|345004667|ref|YP_004807520.1|	-	0.0054	17.3	5.4	0.014	16.0	5.4	1.7	1	0	0	1	1	1	1	SlyX
NUDE_C	PF04880.13	gi|345004667|ref|YP_004807520.1|	-	0.013	16.0	4.4	0.034	14.6	4.4	1.6	1	0	0	1	1	1	0	NUDE	protein,	C-terminal	conserved	region
CCDC106	PF15794.5	gi|345004667|ref|YP_004807520.1|	-	0.02	14.6	3.6	0.042	13.6	3.6	1.4	1	0	0	1	1	1	0	Coiled-coil	domain-containing	protein	106
Cnn_1N	PF07989.11	gi|345004667|ref|YP_004807520.1|	-	0.026	14.7	6.4	0.056	13.6	6.4	1.5	1	0	0	1	1	1	0	Centrosomin	N-terminal	motif	1
SKA1	PF07160.12	gi|345004667|ref|YP_004807520.1|	-	0.029	14.2	0.9	0.057	13.3	0.9	1.4	1	0	0	1	1	1	0	Spindle	and	kinetochore-associated	protein	1
CENP-H	PF05837.12	gi|345004667|ref|YP_004807520.1|	-	0.03	14.7	3.3	0.072	13.5	3.3	1.6	1	0	0	1	1	1	0	Centromere	protein	H	(CENP-H)
DUF4201	PF13870.6	gi|345004667|ref|YP_004807520.1|	-	0.039	13.7	3.6	0.078	12.7	3.6	1.5	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4201)
RP-C_C	PF11800.8	gi|345004667|ref|YP_004807520.1|	-	0.04	14.0	1.2	0.082	13.0	1.2	1.5	1	0	0	1	1	1	0	Replication	protein	C	C-terminal	region
V_ATPase_I	PF01496.19	gi|345004667|ref|YP_004807520.1|	-	0.049	11.6	2.1	0.07	11.1	2.1	1.1	1	0	0	1	1	1	0	V-type	ATPase	116kDa	subunit	family
HSBP1	PF06825.12	gi|345004667|ref|YP_004807520.1|	-	0.06	13.2	0.3	0.11	12.3	0.3	1.4	1	0	0	1	1	1	0	Heat	shock	factor	binding	protein	1
XhlA	PF10779.9	gi|345004667|ref|YP_004807520.1|	-	0.067	13.4	5.8	0.18	12.0	5.8	1.7	1	0	0	1	1	1	0	Haemolysin	XhlA
FlaC_arch	PF05377.11	gi|345004667|ref|YP_004807520.1|	-	0.072	13.5	3.1	0.17	12.3	3.1	1.6	1	0	0	1	1	1	0	Flagella	accessory	protein	C	(FlaC)
TSC22	PF01166.18	gi|345004667|ref|YP_004807520.1|	-	0.087	13.1	14.9	0.11	12.8	7.5	3.3	2	1	1	3	3	3	0	TSC-22/dip/bun	family
HOOK	PF05622.12	gi|345004667|ref|YP_004807520.1|	-	0.093	10.9	3.9	0.13	10.3	3.9	1.1	1	0	0	1	1	1	0	HOOK	protein
GAS	PF13851.6	gi|345004667|ref|YP_004807520.1|	-	0.12	11.8	6.2	0.21	10.9	6.2	1.3	1	0	0	1	1	1	0	Growth-arrest	specific	micro-tubule	binding
DUF4988	PF16378.5	gi|345004667|ref|YP_004807520.1|	-	0.14	11.8	3.3	0.89	9.2	1.5	2.2	2	0	0	2	2	2	0	Domain	of	unknown	function
HALZ	PF02183.18	gi|345004667|ref|YP_004807520.1|	-	0.2	11.9	7.1	0.26	11.6	6.1	1.8	2	0	0	2	2	1	0	Homeobox	associated	leucine	zipper
EMP24_GP25L	PF01105.24	gi|345004667|ref|YP_004807520.1|	-	0.24	11.3	5.2	4.1	7.3	4.2	2.2	2	0	0	2	2	2	0	emp24/gp25L/p24	family/GOLD
Synaptobrevin	PF00957.21	gi|345004667|ref|YP_004807520.1|	-	0.25	11.1	1.7	0.43	10.4	1.7	1.3	1	0	0	1	1	1	0	Synaptobrevin
Spc24	PF08286.11	gi|345004667|ref|YP_004807520.1|	-	0.27	11.5	3.5	0.57	10.5	3.5	1.5	1	0	0	1	1	1	0	Spc24	subunit	of	Ndc80
DivIC	PF04977.15	gi|345004667|ref|YP_004807520.1|	-	0.31	10.8	8.4	0.77	9.6	8.0	1.9	1	1	0	1	1	1	0	Septum	formation	initiator
SpoVR	PF04293.13	gi|345004667|ref|YP_004807520.1|	-	0.35	9.5	4.7	0.55	8.9	4.7	1.2	1	0	0	1	1	1	0	SpoVR	like	protein
Shugoshin_N	PF07558.11	gi|345004667|ref|YP_004807520.1|	-	0.62	10.0	6.8	0.15	11.9	2.5	2.0	1	1	1	2	2	2	0	Shugoshin	N-terminal	coiled-coil	region
Jnk-SapK_ap_N	PF09744.9	gi|345004667|ref|YP_004807520.1|	-	0.68	10.1	7.3	1.9	8.7	7.3	1.7	1	0	0	1	1	1	0	JNK_SAPK-associated	protein-1
Chibby	PF14645.6	gi|345004667|ref|YP_004807520.1|	-	0.7	10.3	4.1	1.7	9.1	4.1	1.6	1	0	0	1	1	1	0	Chibby	family
APG6_N	PF17675.1	gi|345004667|ref|YP_004807520.1|	-	0.77	10.3	9.2	1.5	9.3	9.2	1.5	1	0	0	1	1	1	0	Apg6	coiled-coil	region
ADIP	PF11559.8	gi|345004667|ref|YP_004807520.1|	-	0.78	9.8	7.1	1.7	8.7	7.1	1.5	1	0	0	1	1	1	0	Afadin-	and	alpha	-actinin-Binding
Prefoldin_2	PF01920.20	gi|345004667|ref|YP_004807520.1|	-	0.92	9.5	8.3	1.8	8.6	8.3	1.4	1	0	0	1	1	1	0	Prefoldin	subunit
bZIP_2	PF07716.15	gi|345004667|ref|YP_004807520.1|	-	1.2	9.3	14.7	8.7	6.5	6.5	2.6	1	1	1	2	2	2	0	Basic	region	leucine	zipper
GIT_CC	PF16559.5	gi|345004667|ref|YP_004807520.1|	-	1.2	9.0	5.9	2.4	8.1	5.9	1.5	1	0	0	1	1	1	0	GIT	coiled-coil	Rho	guanine	nucleotide	exchange	factor
GrpE	PF01025.19	gi|345004667|ref|YP_004807520.1|	-	1.2	8.8	5.5	2.3	7.9	5.5	1.4	1	0	0	1	1	1	0	GrpE
DUF2205	PF10224.9	gi|345004667|ref|YP_004807520.1|	-	1.5	8.9	5.6	3.6	7.7	5.6	1.6	1	0	0	1	1	1	0	Short	coiled-coil	protein
Astro_capsid_p	PF12226.8	gi|345004667|ref|YP_004807520.1|	-	1.5	7.9	4.8	2.3	7.3	4.8	1.2	1	0	0	1	1	1	0	Turkey	astrovirus	capsid	protein
DUF3552	PF12072.8	gi|345004667|ref|YP_004807520.1|	-	2.1	7.7	7.5	3.7	6.9	7.5	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3552)
DUF3450	PF11932.8	gi|345004667|ref|YP_004807520.1|	-	2.3	7.4	8.2	0.46	9.8	3.0	2.3	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF3450)
NRBF2	PF08961.10	gi|345004667|ref|YP_004807520.1|	-	2.4	7.7	14.9	0.031	13.9	7.5	1.6	2	0	0	2	2	1	0	Nuclear	receptor-binding	factor	2,	autophagy	regulator
UPF0242	PF06785.11	gi|345004667|ref|YP_004807520.1|	-	7.3	6.6	7.8	2.4	8.2	5.0	1.6	2	0	0	2	2	1	0	Uncharacterised	protein	family	(UPF0242)	N-terminus
DUF2238	PF09997.9	gi|345004668|ref|YP_004807521.1|	-	0.0083	15.9	2.5	0.12	12.2	2.5	2.2	1	1	0	1	1	1	1	Predicted	membrane	protein	(DUF2238)
PsbN	PF02468.15	gi|345004668|ref|YP_004807521.1|	-	1.7	8.5	9.7	2.5	8.0	0.1	3.6	4	1	1	5	5	5	0	Photosystem	II	reaction	centre	N	protein	(psbN)
Acetyltransf_10	PF13673.7	gi|345004671|ref|YP_004807524.1|	-	1.1e-07	31.8	0.0	1.6e-07	31.3	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_1	PF00583.25	gi|345004671|ref|YP_004807524.1|	-	4.4e-07	30.1	0.0	7.6e-07	29.4	0.0	1.4	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_7	PF13508.7	gi|345004671|ref|YP_004807524.1|	-	1.9e-05	25.0	0.0	3.3e-05	24.2	0.0	1.3	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_13	PF13880.6	gi|345004671|ref|YP_004807524.1|	-	0.012	15.6	0.0	0.021	14.8	0.0	1.4	1	0	0	1	1	1	0	ESCO1/2	acetyl-transferase
zf-NADH-PPase	PF09297.11	gi|345004671|ref|YP_004807524.1|	-	0.031	13.9	1.4	0.076	12.7	1.4	1.6	1	0	0	1	1	1	0	NADH	pyrophosphatase	zinc	ribbon	domain
Acetyltransf_9	PF13527.7	gi|345004671|ref|YP_004807524.1|	-	0.032	14.3	0.0	0.07	13.2	0.0	1.5	1	1	0	1	1	1	0	Acetyltransferase	(GNAT)	domain
DUF2318	PF10080.9	gi|345004671|ref|YP_004807524.1|	-	0.033	14.3	0.0	0.057	13.6	0.0	1.3	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2318)
Tnp_P_element_C	PF12596.8	gi|345004671|ref|YP_004807524.1|	-	0.063	13.8	0.1	0.15	12.6	0.1	1.6	1	0	0	1	1	1	0	87kDa	Transposase
HypA	PF01155.19	gi|345004671|ref|YP_004807524.1|	-	0.072	13.1	0.2	0.17	11.9	0.2	1.6	1	0	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
OrfB_Zn_ribbon	PF07282.11	gi|345004671|ref|YP_004807524.1|	-	0.076	12.9	1.0	0.13	12.2	1.0	1.3	1	0	0	1	1	1	0	Putative	transposase	DNA-binding	domain
zf-ribbon_3	PF13248.6	gi|345004671|ref|YP_004807524.1|	-	0.11	11.9	1.2	5	6.7	0.1	2.3	2	0	0	2	2	2	0	zinc-ribbon	domain
TackOD1	PF18551.1	gi|345004671|ref|YP_004807524.1|	-	0.12	12.0	0.2	0.22	11.2	0.2	1.3	1	0	0	1	1	1	0	Thaumarchaeal	output	domain	1
Nudix_N_2	PF14803.6	gi|345004671|ref|YP_004807524.1|	-	0.2	11.6	4.4	0.57	10.1	4.4	1.8	1	1	0	1	1	1	0	Nudix	N-terminal
Rubredoxin_2	PF18073.1	gi|345004671|ref|YP_004807524.1|	-	1.2	8.9	4.6	2	8.2	0.4	2.2	2	0	0	2	2	2	0	Rubredoxin	metal	binding	domain
DUF2270	PF10028.9	gi|345004672|ref|YP_004807525.1|	-	4.3e-69	231.8	2.5	5.1e-69	231.5	2.5	1.0	1	0	0	1	1	1	1	Predicted	integral	membrane	protein	(DUF2270)
Acyl_transf_3	PF01757.22	gi|345004672|ref|YP_004807525.1|	-	0.0082	15.2	0.4	0.0082	15.2	0.4	1.8	2	0	0	2	2	2	1	Acyltransferase	family
DctQ	PF04290.12	gi|345004672|ref|YP_004807525.1|	-	0.031	14.2	6.2	0.14	12.0	0.1	2.2	2	0	0	2	2	2	0	Tripartite	ATP-independent	periplasmic	transporters,	DctQ	component
DUF4177	PF13783.6	gi|345004673|ref|YP_004807526.1|	-	3.5e-07	30.4	0.0	5.5e-07	29.8	0.0	1.3	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4177)
DUF2812	PF11193.8	gi|345004673|ref|YP_004807526.1|	-	0.12	12.6	0.1	0.2	11.9	0.0	1.5	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF2812)
DUF2254	PF10011.9	gi|345004674|ref|YP_004807527.1|	-	0.0066	15.3	3.8	0.0066	15.3	3.8	2.0	2	0	0	2	2	2	1	Predicted	membrane	protein	(DUF2254)
Vut_1	PF02592.15	gi|345004674|ref|YP_004807527.1|	-	0.0086	16.4	1.0	0.0086	16.4	1.0	2.2	2	0	0	2	2	2	1	Putative	vitamin	uptake	transporter
DUF4013	PF13197.6	gi|345004674|ref|YP_004807527.1|	-	7.9	6.3	17.8	1.5	8.6	7.1	2.2	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF4013)
SOR_SNZ	PF01680.17	gi|345004675|ref|YP_004807528.1|	-	5.4e-96	320.3	6.7	7.1e-96	319.9	6.7	1.1	1	0	0	1	1	1	1	SOR/SNZ	family
ThiG	PF05690.14	gi|345004675|ref|YP_004807528.1|	-	1.3e-09	37.7	5.7	1e-06	28.3	0.5	2.3	2	0	0	2	2	2	2	Thiazole	biosynthesis	protein	ThiG
Dus	PF01207.17	gi|345004675|ref|YP_004807528.1|	-	0.00023	20.4	0.9	0.17	10.9	0.1	2.4	2	0	0	2	2	2	2	Dihydrouridine	synthase	(Dus)
OMPdecase	PF00215.24	gi|345004675|ref|YP_004807528.1|	-	0.0058	16.2	0.1	2.7	7.5	0.0	2.5	1	1	1	2	2	2	2	Orotidine	5'-phosphate	decarboxylase	/	HUMPS	family
IGPS	PF00218.21	gi|345004675|ref|YP_004807528.1|	-	0.0086	15.3	0.1	0.11	11.6	0.0	2.5	2	1	0	2	2	2	1	Indole-3-glycerol	phosphate	synthase
NanE	PF04131.14	gi|345004675|ref|YP_004807528.1|	-	0.027	13.7	0.6	0.31	10.2	0.0	2.4	2	1	0	2	2	2	0	Putative	N-acetylmannosamine-6-phosphate	epimerase
NMO	PF03060.15	gi|345004675|ref|YP_004807528.1|	-	0.029	13.8	1.4	0.11	11.8	0.1	2.1	2	0	0	2	2	2	0	Nitronate	monooxygenase
DUF1405	PF07187.11	gi|345004676|ref|YP_004807529.1|	-	1e-49	168.5	9.4	1.3e-49	168.2	9.4	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1405)
DUF3180	PF11377.8	gi|345004676|ref|YP_004807529.1|	-	0.0072	16.5	3.4	1.2	9.3	0.1	2.9	3	0	0	3	3	3	2	Protein	of	unknown	function	(DUF3180)
Promethin	PF16015.5	gi|345004676|ref|YP_004807529.1|	-	1.5	8.8	14.4	0.083	12.8	7.5	2.4	2	0	0	2	2	2	0	Promethin
DUF2721	PF11026.8	gi|345004676|ref|YP_004807529.1|	-	8.4	6.3	7.9	20	5.1	0.3	2.4	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2721)
Aconitase_C	PF00694.19	gi|345004678|ref|YP_004807531.1|	-	4.5e-20	72.3	0.0	6.2e-20	71.9	0.0	1.2	1	0	0	1	1	1	1	Aconitase	C-terminal	domain
LysR_substrate	PF03466.20	gi|345004678|ref|YP_004807531.1|	-	0.13	11.6	0.0	0.22	10.9	0.0	1.3	1	0	0	1	1	1	0	LysR	substrate	binding	domain
Aconitase	PF00330.20	gi|345004679|ref|YP_004807532.1|	-	2.3e-146	488.4	0.1	2.7e-146	488.2	0.1	1.0	1	0	0	1	1	1	1	Aconitase	family	(aconitate	hydratase)
DUF521	PF04412.13	gi|345004679|ref|YP_004807532.1|	-	0.024	13.4	0.0	0.037	12.7	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF521)
IlvN	PF07991.12	gi|345004681|ref|YP_004807534.1|	-	1.1e-68	230.0	0.4	1.5e-68	229.5	0.4	1.2	1	0	0	1	1	1	1	Acetohydroxy	acid	isomeroreductase,	NADPH-binding	domain
IlvC	PF01450.19	gi|345004681|ref|YP_004807534.1|	-	2.9e-63	212.4	0.6	5.4e-63	211.6	0.6	1.4	1	0	0	1	1	1	1	Acetohydroxy	acid	isomeroreductase,	catalytic	domain
F420_oxidored	PF03807.17	gi|345004681|ref|YP_004807534.1|	-	1.4e-08	35.2	0.1	3.6e-08	33.9	0.1	1.7	1	0	0	1	1	1	1	NADP	oxidoreductase	coenzyme	F420-dependent
NAD_binding_2	PF03446.15	gi|345004681|ref|YP_004807534.1|	-	8e-07	29.4	0.0	1.6e-06	28.4	0.0	1.5	1	0	0	1	1	1	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
2-Hacid_dh_C	PF02826.19	gi|345004681|ref|YP_004807534.1|	-	1.8e-06	27.4	0.0	3.1e-06	26.7	0.0	1.3	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
ApbA	PF02558.16	gi|345004681|ref|YP_004807534.1|	-	0.013	15.2	0.0	0.023	14.3	0.0	1.4	1	0	0	1	1	1	0	Ketopantoate	reductase	PanE/ApbA
AdoHcyase_NAD	PF00670.21	gi|345004681|ref|YP_004807534.1|	-	0.04	14.0	0.1	0.092	12.8	0.1	1.5	1	0	0	1	1	1	0	S-adenosyl-L-homocysteine	hydrolase,	NAD	binding	domain
NAD_Gly3P_dh_N	PF01210.23	gi|345004681|ref|YP_004807534.1|	-	0.08	12.9	0.2	1.1	9.2	0.2	2.1	1	1	0	1	1	1	0	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
3HCDH_N	PF02737.18	gi|345004681|ref|YP_004807534.1|	-	0.084	12.8	0.1	0.3	11.0	0.1	1.9	2	0	0	2	2	2	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
Mur_ligase	PF01225.25	gi|345004681|ref|YP_004807534.1|	-	0.16	12.3	0.2	0.41	11.0	0.2	1.7	1	1	0	1	1	1	0	Mur	ligase	family,	catalytic	domain
CoA_binding_2	PF13380.6	gi|345004681|ref|YP_004807534.1|	-	0.22	12.0	0.7	0.65	10.5	0.7	2.0	1	1	0	1	1	1	0	CoA	binding	domain
ALS_ss_C	PF10369.9	gi|345004682|ref|YP_004807535.1|	-	1.1e-19	70.4	0.0	1.7e-19	69.8	0.0	1.3	1	0	0	1	1	1	1	Small	subunit	of	acetolactate	synthase
ACT_5	PF13710.6	gi|345004682|ref|YP_004807535.1|	-	6e-15	54.8	0.1	2.9e-13	49.4	0.0	2.3	2	0	0	2	2	2	1	ACT	domain
ACT	PF01842.25	gi|345004682|ref|YP_004807535.1|	-	3e-10	39.7	0.0	6.1e-10	38.7	0.0	1.6	1	0	0	1	1	1	1	ACT	domain
ACT_4	PF13291.6	gi|345004682|ref|YP_004807535.1|	-	0.039	14.5	0.0	0.078	13.6	0.0	1.5	1	0	0	1	1	1	0	ACT	domain
TPP_enzyme_C	PF02775.21	gi|345004683|ref|YP_004807536.1|	-	4.5e-52	175.9	0.1	4.5e-52	175.9	0.1	2.1	2	0	0	2	2	2	1	Thiamine	pyrophosphate	enzyme,	C-terminal	TPP	binding	domain
TPP_enzyme_N	PF02776.18	gi|345004683|ref|YP_004807536.1|	-	2e-50	170.7	1.6	2e-50	170.7	1.6	2.6	3	0	0	3	3	3	1	Thiamine	pyrophosphate	enzyme,	N-terminal	TPP	binding	domain
TPP_enzyme_M	PF00205.22	gi|345004683|ref|YP_004807536.1|	-	5e-45	152.6	0.0	9.6e-45	151.7	0.0	1.5	1	0	0	1	1	1	1	Thiamine	pyrophosphate	enzyme,	central	domain
CO_dh	PF02552.16	gi|345004683|ref|YP_004807536.1|	-	0.14	12.0	0.0	0.23	11.2	0.0	1.3	1	0	0	1	1	1	0	CO	dehydrogenase	beta	subunit/acetyl-CoA	synthase	epsilon	subunit
ILVD_EDD	PF00920.21	gi|345004684|ref|YP_004807537.1|	-	8.6e-200	664.7	0.9	9.7e-200	664.6	0.9	1.0	1	0	0	1	1	1	1	Dehydratase	family
KOW	PF00467.29	gi|345004684|ref|YP_004807537.1|	-	0.14	12.1	0.2	8.5	6.5	0.0	2.8	2	0	0	2	2	2	0	KOW	motif
Rieske	PF00355.26	gi|345004686|ref|YP_004807539.1|	-	3.7e-09	36.4	0.2	6.7e-09	35.6	0.2	1.3	1	1	0	1	1	1	1	Rieske	[2Fe-2S]	domain
NikR_C	PF08753.11	gi|345004687|ref|YP_004807540.1|	-	2e-21	76.0	2.7	2.8e-21	75.5	2.7	1.2	1	0	0	1	1	1	1	NikR	C	terminal	nickel	binding	domain
RHH_1	PF01402.21	gi|345004687|ref|YP_004807540.1|	-	1.9e-06	27.6	0.0	3.1e-06	26.9	0.0	1.4	1	0	0	1	1	1	1	Ribbon-helix-helix	protein,	copG	family
HicB_lk_antitox	PF15919.5	gi|345004687|ref|YP_004807540.1|	-	0.014	15.5	0.0	0.027	14.6	0.0	1.5	2	0	0	2	2	2	0	HicB_like	antitoxin	of	bacterial	toxin-antitoxin	system
OrfB_Zn_ribbon	PF07282.11	gi|345004689|ref|YP_004807542.1|	-	3.3e-18	65.4	0.1	6.1e-18	64.5	0.1	1.5	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
OrfB_IS605	PF01385.19	gi|345004689|ref|YP_004807542.1|	-	1.3e-15	57.7	0.1	2.7e-15	56.6	0.1	1.5	1	0	0	1	1	1	1	Probable	transposase
HTH_OrfB_IS605	PF12323.8	gi|345004689|ref|YP_004807542.1|	-	1.6e-05	24.2	0.4	5e-05	22.7	0.1	1.8	2	0	0	2	2	2	1	Helix-turn-helix	domain
PUF	PF00806.19	gi|345004689|ref|YP_004807542.1|	-	0.064	13.0	0.1	48	3.9	0.0	3.5	3	0	0	3	3	3	0	Pumilio-family	RNA	binding	repeat
Zn_Tnp_IS91	PF14319.6	gi|345004689|ref|YP_004807542.1|	-	0.1	12.6	1.1	0.31	11.1	1.1	1.8	1	0	0	1	1	1	0	Transposase	zinc-binding	domain
Rubredoxin_2	PF18073.1	gi|345004689|ref|YP_004807542.1|	-	0.13	12.0	2.5	0.33	10.7	2.5	1.7	1	1	0	1	1	1	0	Rubredoxin	metal	binding	domain
DZR	PF12773.7	gi|345004689|ref|YP_004807542.1|	-	0.14	12.2	1.1	0.24	11.5	1.1	1.4	1	0	0	1	1	1	0	Double	zinc	ribbon
DDE_3	PF13358.6	gi|345004690|ref|YP_004807543.1|	-	2.2e-26	92.3	0.0	3.8e-26	91.6	0.0	1.4	1	0	0	1	1	1	1	DDE	superfamily	endonuclease
HTH_32	PF13565.6	gi|345004690|ref|YP_004807543.1|	-	5.7e-15	55.7	1.1	3.1e-14	53.3	0.6	2.5	3	0	0	3	3	3	1	Homeodomain-like	domain
HTH_23	PF13384.6	gi|345004690|ref|YP_004807543.1|	-	2.3e-12	46.3	0.1	8.9e-11	41.3	0.0	2.8	2	1	0	2	2	2	1	Homeodomain-like	domain
HTH_29	PF13551.6	gi|345004690|ref|YP_004807543.1|	-	6.1e-12	45.4	0.5	1.8e-11	43.9	0.5	1.8	2	0	0	2	2	2	1	Winged	helix-turn	helix
HTH_28	PF13518.6	gi|345004690|ref|YP_004807543.1|	-	3.7e-05	23.8	0.2	0.00022	21.3	0.1	2.3	2	0	0	2	2	2	1	Helix-turn-helix	domain
Terminase_5	PF06056.12	gi|345004690|ref|YP_004807543.1|	-	0.02	14.8	0.0	0.067	13.1	0.0	1.9	1	0	0	1	1	1	0	Putative	ATPase	subunit	of	terminase	(gpP-like)
GDE_N	PF12439.8	gi|345004690|ref|YP_004807543.1|	-	0.07	12.5	0.2	0.13	11.7	0.2	1.3	1	0	0	1	1	1	0	Glycogen	debranching	enzyme	N	terminal
HTH_Tnp_Tc3_2	PF01498.18	gi|345004690|ref|YP_004807543.1|	-	0.081	13.2	0.0	0.2	11.9	0.0	1.7	1	0	0	1	1	1	0	Transposase
ABC_tran	PF00005.27	gi|345004691|ref|YP_004807544.1|	-	7e-33	114.0	0.0	1.2e-32	113.3	0.0	1.4	1	0	0	1	1	1	1	ABC	transporter
oligo_HPY	PF08352.12	gi|345004691|ref|YP_004807544.1|	-	3.6e-19	69.0	0.1	7.8e-19	68.0	0.1	1.6	1	0	0	1	1	1	1	Oligopeptide/dipeptide	transporter,	C-terminal	region
SMC_N	PF02463.19	gi|345004691|ref|YP_004807544.1|	-	0.00055	19.4	0.0	0.001	18.5	0.0	1.4	1	0	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_21	PF13304.6	gi|345004691|ref|YP_004807544.1|	-	0.0016	18.3	0.1	0.026	14.3	0.0	2.4	1	1	0	2	2	2	1	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_16	PF13191.6	gi|345004691|ref|YP_004807544.1|	-	0.0018	18.7	0.0	0.0051	17.2	0.0	1.8	2	0	0	2	2	2	1	AAA	ATPase	domain
NB-ARC	PF00931.22	gi|345004691|ref|YP_004807544.1|	-	0.032	13.4	0.0	0.049	12.8	0.0	1.3	1	0	0	1	1	1	0	NB-ARC	domain
AAA_22	PF13401.6	gi|345004691|ref|YP_004807544.1|	-	0.036	14.3	1.5	0.71	10.1	1.1	2.6	2	1	0	2	2	2	0	AAA	domain
AAA_29	PF13555.6	gi|345004691|ref|YP_004807544.1|	-	0.081	12.7	0.0	0.18	11.6	0.0	1.5	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
AAA_25	PF13481.6	gi|345004691|ref|YP_004807544.1|	-	0.11	12.1	0.0	0.37	10.3	0.0	1.9	2	0	0	2	2	2	0	AAA	domain
RsgA_GTPase	PF03193.16	gi|345004691|ref|YP_004807544.1|	-	0.12	12.3	0.0	0.21	11.5	0.0	1.4	1	0	0	1	1	1	0	RsgA	GTPase
ATP-synt_ab	PF00006.25	gi|345004691|ref|YP_004807544.1|	-	0.14	11.8	0.0	0.18	11.5	0.0	1.3	1	0	0	1	1	1	0	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
IstB_IS21	PF01695.17	gi|345004691|ref|YP_004807544.1|	-	0.21	11.3	0.0	0.37	10.5	0.0	1.3	1	0	0	1	1	1	0	IstB-like	ATP	binding	protein
RNA_helicase	PF00910.22	gi|345004691|ref|YP_004807544.1|	-	0.22	11.9	0.0	0.4	11.1	0.0	1.4	1	0	0	1	1	1	0	RNA	helicase
ABC_tran	PF00005.27	gi|345004692|ref|YP_004807545.1|	-	2.9e-27	95.9	0.0	4.1e-27	95.4	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
oligo_HPY	PF08352.12	gi|345004692|ref|YP_004807545.1|	-	1.3e-16	60.9	0.4	2.3e-16	60.1	0.4	1.4	1	0	0	1	1	1	1	Oligopeptide/dipeptide	transporter,	C-terminal	region
AAA_21	PF13304.6	gi|345004692|ref|YP_004807545.1|	-	6e-09	36.1	0.1	4e-07	30.1	0.0	2.1	1	1	0	2	2	2	1	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_22	PF13401.6	gi|345004692|ref|YP_004807545.1|	-	0.00014	22.2	0.5	0.0015	18.8	0.5	2.1	1	1	0	1	1	1	1	AAA	domain
TniB	PF05621.11	gi|345004692|ref|YP_004807545.1|	-	0.00098	18.6	0.0	0.076	12.4	0.0	2.2	2	0	0	2	2	2	1	Bacterial	TniB	protein
SMC_N	PF02463.19	gi|345004692|ref|YP_004807545.1|	-	0.0024	17.3	0.1	0.57	9.6	0.0	2.1	2	0	0	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
AAA_29	PF13555.6	gi|345004692|ref|YP_004807545.1|	-	0.019	14.7	0.0	0.04	13.7	0.0	1.5	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
ATP-synt_ab	PF00006.25	gi|345004692|ref|YP_004807545.1|	-	0.028	14.1	0.0	0.054	13.1	0.0	1.4	1	0	0	1	1	1	0	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
AAA_16	PF13191.6	gi|345004692|ref|YP_004807545.1|	-	0.036	14.5	0.1	0.064	13.6	0.1	1.6	1	1	0	1	1	1	0	AAA	ATPase	domain
AAA_7	PF12775.7	gi|345004692|ref|YP_004807545.1|	-	0.063	12.8	0.0	0.28	10.7	0.0	1.9	2	0	0	2	2	2	0	P-loop	containing	dynein	motor	region
FtsK_SpoIIIE	PF01580.18	gi|345004692|ref|YP_004807545.1|	-	0.083	12.2	0.1	1.1	8.6	0.0	2.1	1	1	1	2	2	2	0	FtsK/SpoIIIE	family
IstB_IS21	PF01695.17	gi|345004692|ref|YP_004807545.1|	-	0.088	12.5	0.1	0.38	10.5	0.0	1.9	2	0	0	2	2	2	0	IstB-like	ATP	binding	protein
AAA_5	PF07728.14	gi|345004692|ref|YP_004807545.1|	-	0.11	12.5	0.0	0.23	11.5	0.0	1.5	1	0	0	1	1	1	0	AAA	domain	(dynein-related	subfamily)
Sigma54_activat	PF00158.26	gi|345004692|ref|YP_004807545.1|	-	0.13	12.0	0.1	0.37	10.5	0.0	1.7	2	0	0	2	2	2	0	Sigma-54	interaction	domain
ABC_ATPase	PF09818.9	gi|345004692|ref|YP_004807545.1|	-	0.16	10.8	4.3	0.15	10.8	1.6	2.1	2	1	0	2	2	2	0	Predicted	ATPase	of	the	ABC	class
BPD_transp_1	PF00528.22	gi|345004693|ref|YP_004807546.1|	-	5e-22	78.5	9.2	5e-22	78.5	9.2	2.2	2	0	0	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
OppC_N	PF12911.7	gi|345004693|ref|YP_004807546.1|	-	2.2e-09	37.1	0.3	2.2e-09	37.1	0.3	3.0	3	1	1	4	4	4	1	N-terminal	TM	domain	of	oligopeptide	transport	permease	C
Chitin_synth_2	PF03142.15	gi|345004693|ref|YP_004807546.1|	-	0.011	14.3	0.9	0.011	14.3	0.9	1.7	2	0	0	2	2	2	0	Chitin	synthase
BPD_transp_1	PF00528.22	gi|345004694|ref|YP_004807547.1|	-	5.9e-32	110.9	10.8	5.9e-32	110.9	10.8	1.8	2	0	0	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
DUF1453	PF07301.11	gi|345004694|ref|YP_004807547.1|	-	0.92	9.5	7.1	1.9	8.5	1.1	3.2	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF1453)
SBP_bac_5	PF00496.22	gi|345004695|ref|YP_004807548.1|	-	1.1e-48	166.1	4.2	1.5e-48	165.7	4.2	1.2	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	proteins,	family	5	Middle
TAT_signal	PF10518.9	gi|345004695|ref|YP_004807548.1|	-	0.03	14.2	0.4	0.054	13.4	0.4	1.4	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
PQQ_3	PF13570.6	gi|345004696|ref|YP_004807549.1|	-	3.8e-35	119.5	39.7	1.7e-09	37.8	0.8	8.4	8	0	0	8	8	8	8	PQQ-like	domain
PQQ_2	PF13360.6	gi|345004696|ref|YP_004807549.1|	-	2e-33	115.9	20.2	3.2e-13	49.8	4.4	3.3	1	1	1	3	3	3	3	PQQ-like	domain
PQQ	PF01011.21	gi|345004696|ref|YP_004807549.1|	-	1.9e-21	74.9	11.1	1.2e-07	31.3	0.0	7.0	7	0	0	7	7	7	6	PQQ	enzyme	repeat
Rod_cone_degen	PF15201.6	gi|345004696|ref|YP_004807549.1|	-	0.19	11.8	0.8	4.8	7.4	0.1	3.0	3	0	0	3	3	3	0	Progressive	rod-cone	degeneration
Lactamase_B_3	PF13483.6	gi|345004697|ref|YP_004807550.1|	-	2.3e-23	82.9	0.4	3.5e-23	82.3	0.4	1.3	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
Lactamase_B_2	PF12706.7	gi|345004697|ref|YP_004807550.1|	-	8.8e-17	61.3	1.7	8.8e-17	61.3	1.7	1.5	2	0	0	2	2	2	1	Beta-lactamase	superfamily	domain
Lactamase_B	PF00753.27	gi|345004697|ref|YP_004807550.1|	-	2.4e-06	27.7	9.7	7.6e-06	26.1	9.7	2.1	1	1	0	1	1	1	1	Metallo-beta-lactamase	superfamily
OsmC	PF02566.19	gi|345004698|ref|YP_004807551.1|	-	1.5e-10	41.5	0.0	2e-10	41.1	0.0	1.1	1	0	0	1	1	1	1	OsmC-like	protein
ATPase	PF06745.13	gi|345004700|ref|YP_004807553.1|	-	1.9e-08	34.0	0.0	0.001	18.5	0.0	2.1	2	0	0	2	2	2	2	KaiC
PAXNEB	PF05625.11	gi|345004700|ref|YP_004807553.1|	-	0.12	11.4	0.0	0.28	10.3	0.0	1.5	2	0	0	2	2	2	0	PAXNEB	protein
CbiA	PF01656.23	gi|345004701|ref|YP_004807554.1|	-	9.9e-11	41.8	0.0	1.4e-10	41.3	0.0	1.2	1	0	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
ParA	PF10609.9	gi|345004701|ref|YP_004807554.1|	-	6.4e-10	38.9	0.2	9.1e-10	38.4	0.2	1.2	1	0	0	1	1	1	1	NUBPL	iron-transfer	P-loop	NTPase
AAA_26	PF13500.6	gi|345004701|ref|YP_004807554.1|	-	2.7e-05	24.1	1.8	0.022	14.6	0.0	2.4	2	1	0	2	2	2	2	AAA	domain
AAA_31	PF13614.6	gi|345004701|ref|YP_004807554.1|	-	0.0018	18.2	3.0	0.0042	17.0	3.0	1.9	1	1	0	1	1	1	1	AAA	domain
ThiG	PF05690.14	gi|345004701|ref|YP_004807554.1|	-	0.021	14.2	2.0	0.033	13.5	2.0	1.3	1	0	0	1	1	1	0	Thiazole	biosynthesis	protein	ThiG
ArsA_ATPase	PF02374.15	gi|345004701|ref|YP_004807554.1|	-	0.026	13.7	4.0	0.089	12.0	1.0	2.1	2	0	0	2	2	2	0	Anion-transporting	ATPase
preATP-grasp_3	PF18301.1	gi|345004701|ref|YP_004807554.1|	-	0.05	13.9	0.0	0.12	12.6	0.0	1.7	1	0	0	1	1	1	0	pre	ATP-grasp	3	domain
AAA_24	PF13479.6	gi|345004701|ref|YP_004807554.1|	-	0.054	13.2	0.1	0.1	12.3	0.1	1.5	1	1	0	1	1	1	0	AAA	domain
AAA_33	PF13671.6	gi|345004701|ref|YP_004807554.1|	-	0.09	12.9	0.9	0.15	12.3	0.2	1.9	2	1	0	2	2	2	0	AAA	domain
CBP_BcsQ	PF06564.12	gi|345004701|ref|YP_004807554.1|	-	0.09	12.2	2.1	0.72	9.3	2.1	2.1	1	1	0	1	1	1	0	Cellulose	biosynthesis	protein	BcsQ
MipZ	PF09140.11	gi|345004701|ref|YP_004807554.1|	-	0.24	10.7	0.9	0.5	9.6	0.9	1.6	1	1	0	1	1	1	0	ATPase	MipZ
SRP54	PF00448.22	gi|345004701|ref|YP_004807554.1|	-	0.27	10.9	1.5	4.5	6.8	0.6	2.2	1	1	0	2	2	2	0	SRP54-type	protein,	GTPase	domain
Com_YlbF	PF06133.11	gi|345004702|ref|YP_004807555.1|	-	3.6e-24	85.4	7.0	4e-24	85.2	7.0	1.0	1	0	0	1	1	1	1	Control	of	competence	regulator	ComK,	YlbF/YmcA
DUF3080	PF11279.8	gi|345004702|ref|YP_004807555.1|	-	0.00078	18.8	2.4	0.00092	18.5	2.4	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3080)
FTA4	PF13093.6	gi|345004702|ref|YP_004807555.1|	-	0.042	13.7	3.2	0.048	13.5	3.2	1.1	1	0	0	1	1	1	0	Kinetochore	complex	Fta4	of	Sim4	subunit,	or	CENP-50
Utp11	PF03998.13	gi|345004702|ref|YP_004807555.1|	-	0.086	12.8	4.3	0.11	12.5	4.3	1.0	1	0	0	1	1	1	0	Utp11	protein
Occludin_ELL	PF07303.13	gi|345004702|ref|YP_004807555.1|	-	0.15	12.8	2.1	0.23	12.2	2.1	1.3	1	1	0	1	1	1	0	Occludin	homology	domain
OmpH	PF03938.14	gi|345004702|ref|YP_004807555.1|	-	1.2	9.5	9.4	1.6	9.1	9.4	1.2	1	0	0	1	1	1	0	Outer	membrane	protein	(OmpH-like)
ATP-synt_DE	PF00401.20	gi|345004702|ref|YP_004807555.1|	-	1.6	9.0	12.8	0.38	11.0	1.5	2.7	2	1	1	3	3	3	0	ATP	synthase,	Delta/Epsilon	chain,	long	alpha-helix	domain
Abhydrolase_2	PF02230.16	gi|345004704|ref|YP_004807557.1|	-	2.7e-17	63.3	0.0	3.3e-17	63.0	0.0	1.1	1	0	0	1	1	1	1	Phospholipase/Carboxylesterase
DLH	PF01738.18	gi|345004704|ref|YP_004807557.1|	-	1.4e-08	34.5	0.0	1.9e-08	34.1	0.0	1.1	1	0	0	1	1	1	1	Dienelactone	hydrolase	family
Peptidase_S9	PF00326.21	gi|345004704|ref|YP_004807557.1|	-	7e-07	28.9	0.0	0.0065	16.0	0.0	2.3	1	1	1	2	2	2	2	Prolyl	oligopeptidase	family
Hydrolase_4	PF12146.8	gi|345004704|ref|YP_004807557.1|	-	4.2e-05	22.9	0.1	0.04	13.2	0.0	2.5	1	1	1	2	2	2	2	Serine	aminopeptidase,	S33
FSH1	PF03959.13	gi|345004704|ref|YP_004807557.1|	-	8.8e-05	22.3	0.0	0.0002	21.1	0.0	1.6	1	1	0	1	1	1	1	Serine	hydrolase	(FSH1)
Abhydrolase_1	PF00561.20	gi|345004704|ref|YP_004807557.1|	-	0.00044	20.0	0.1	0.0042	16.8	0.1	1.9	1	1	1	2	2	2	1	alpha/beta	hydrolase	fold
Esterase	PF00756.20	gi|345004704|ref|YP_004807557.1|	-	0.0006	19.5	0.0	0.0019	17.9	0.0	1.9	1	1	0	1	1	1	1	Putative	esterase
Esterase_phd	PF10503.9	gi|345004704|ref|YP_004807557.1|	-	0.0083	15.6	0.0	0.013	15.0	0.0	1.5	1	0	0	1	1	1	1	Esterase	PHB	depolymerase
LIP	PF03583.14	gi|345004704|ref|YP_004807557.1|	-	0.035	13.4	0.0	2.7	7.2	0.0	2.1	1	1	1	2	2	2	0	Secretory	lipase
tRNA-synt_1	PF00133.22	gi|345004705|ref|YP_004807558.1|	-	3.7e-174	580.3	1.3	4.6e-174	580.0	1.3	1.1	1	0	0	1	1	1	1	tRNA	synthetases	class	I	(I,	L,	M	and	V)
tRNA-synt_1g	PF09334.11	gi|345004705|ref|YP_004807558.1|	-	7.6e-27	94.1	1.4	4.3e-11	42.2	0.0	4.1	3	1	0	3	3	3	3	tRNA	synthetases	class	I	(M)
Anticodon_1	PF08264.13	gi|345004705|ref|YP_004807558.1|	-	2.1e-25	89.5	0.1	4.2e-25	88.5	0.1	1.5	1	0	0	1	1	1	1	Anticodon-binding	domain	of	tRNA
tRNA-synt_1_2	PF13603.6	gi|345004705|ref|YP_004807558.1|	-	5.1e-05	22.9	0.0	0.00011	21.8	0.0	1.5	1	0	0	1	1	1	1	Leucyl-tRNA	synthetase,	Domain	2
tRNA-synt_1e	PF01406.19	gi|345004705|ref|YP_004807558.1|	-	8.1e-05	22.1	0.0	0.00018	21.0	0.0	1.5	1	0	0	1	1	1	1	tRNA	synthetases	class	I	(C)	catalytic	domain
tRNA-synt_1f	PF01921.18	gi|345004705|ref|YP_004807558.1|	-	0.0083	15.1	0.0	0.18	10.7	0.0	2.3	2	0	0	2	2	2	1	tRNA	synthetases	class	I	(K)
zf-ACC	PF17848.1	gi|345004705|ref|YP_004807558.1|	-	0.031	14.4	0.3	0.2	11.8	0.2	2.3	2	0	0	2	2	2	0	Acetyl-coA	carboxylase	zinc	finger	domain
DAO	PF01266.24	gi|345004706|ref|YP_004807559.1|	-	4.1e-53	181.2	9.4	5.1e-53	180.9	9.2	1.2	1	1	0	1	1	1	1	FAD	dependent	oxidoreductase
Pyr_redox_2	PF07992.14	gi|345004706|ref|YP_004807559.1|	-	1.3e-08	34.5	0.8	0.00018	20.8	0.4	2.2	2	0	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox	PF00070.27	gi|345004706|ref|YP_004807559.1|	-	2.7e-06	27.9	1.6	0.0016	19.0	2.2	2.5	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
HI0933_like	PF03486.14	gi|345004706|ref|YP_004807559.1|	-	0.0002	20.2	1.3	0.019	13.7	1.9	2.1	2	0	0	2	2	2	1	HI0933-like	protein
NAD_binding_8	PF13450.6	gi|345004706|ref|YP_004807559.1|	-	0.00032	20.9	3.3	0.0011	19.1	1.9	2.7	3	0	0	3	3	2	1	NAD(P)-binding	Rossmann-like	domain
FAD_binding_3	PF01494.19	gi|345004706|ref|YP_004807559.1|	-	0.00047	19.5	5.9	0.0018	17.6	5.9	1.9	1	1	0	1	1	1	1	FAD	binding	domain
Pyr_redox_3	PF13738.6	gi|345004706|ref|YP_004807559.1|	-	0.0012	18.2	0.3	0.0074	15.6	0.4	1.9	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
3HCDH_N	PF02737.18	gi|345004706|ref|YP_004807559.1|	-	0.0026	17.7	0.4	0.0045	16.9	0.4	1.4	1	0	0	1	1	1	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
Amino_oxidase	PF01593.24	gi|345004706|ref|YP_004807559.1|	-	0.016	14.5	1.0	0.38	10.0	0.0	2.4	2	0	0	2	2	2	0	Flavin	containing	amine	oxidoreductase
Thi4	PF01946.17	gi|345004706|ref|YP_004807559.1|	-	0.016	14.4	1.5	0.27	10.4	0.9	2.8	3	0	0	3	3	3	0	Thi4	family
Lycopene_cycl	PF05834.12	gi|345004706|ref|YP_004807559.1|	-	0.039	13.0	4.4	0.29	10.2	1.5	2.4	3	0	0	3	3	3	0	Lycopene	cyclase	protein
ApbA	PF02558.16	gi|345004706|ref|YP_004807559.1|	-	0.094	12.4	0.3	0.17	11.5	0.3	1.5	1	0	0	1	1	1	0	Ketopantoate	reductase	PanE/ApbA
FAD_binding_2	PF00890.24	gi|345004706|ref|YP_004807559.1|	-	0.34	9.9	7.6	2.9	6.9	7.6	2.4	1	1	0	1	1	1	0	FAD	binding	domain
Malic_M	PF03949.15	gi|345004706|ref|YP_004807559.1|	-	0.43	9.8	1.5	16	4.6	0.5	2.2	2	0	0	2	2	2	0	Malic	enzyme,	NAD	binding	domain
GIDA	PF01134.22	gi|345004706|ref|YP_004807559.1|	-	0.81	8.7	4.7	1.6	7.8	3.3	1.9	2	0	0	2	2	2	0	Glucose	inhibited	division	protein	A
FAD_oxidored	PF12831.7	gi|345004706|ref|YP_004807559.1|	-	3.1	7.0	8.4	11	5.3	0.1	2.1	2	0	0	2	2	2	0	FAD	dependent	oxidoreductase
RibD_C	PF01872.17	gi|345004707|ref|YP_004807560.1|	-	2.8e-50	170.9	0.3	3.2e-50	170.8	0.3	1.0	1	0	0	1	1	1	1	RibD	C-terminal	domain
Inositol_P	PF00459.25	gi|345004708|ref|YP_004807561.1|	-	2.9e-45	154.9	0.9	3.4e-45	154.7	0.9	1.0	1	0	0	1	1	1	1	Inositol	monophosphatase	family
SLATT_2	PF18183.1	gi|345004708|ref|YP_004807561.1|	-	0.021	14.6	0.0	0.05	13.4	0.0	1.6	2	0	0	2	2	2	0	SMODS	and	SLOG-associating	2TM	effector	domain	2
tRNA_anti-codon	PF01336.25	gi|345004709|ref|YP_004807562.1|	-	0.00033	20.6	2.0	0.6	10.1	0.0	4.0	4	0	0	4	4	4	2	OB-fold	nucleic	acid	binding	domain
Linker_histone	PF00538.19	gi|345004710|ref|YP_004807563.1|	-	0.17	12.3	0.0	0.34	11.3	0.0	1.4	1	0	0	1	1	1	0	linker	histone	H1	and	H5	family
Metallophos_2	PF12850.7	gi|345004711|ref|YP_004807564.1|	-	2.4e-07	31.1	0.1	3.6e-07	30.5	0.1	1.2	1	0	0	1	1	1	1	Calcineurin-like	phosphoesterase	superfamily	domain
Metallophos	PF00149.28	gi|345004711|ref|YP_004807564.1|	-	1.2e-06	29.1	0.1	2.2e-06	28.4	0.1	1.4	1	1	0	1	1	1	1	Calcineurin-like	phosphoesterase
Hydrolase_3	PF08282.12	gi|345004715|ref|YP_004807568.1|	-	7.4e-27	94.7	0.0	2.6e-17	63.4	0.1	2.0	1	1	1	2	2	2	2	haloacid	dehalogenase-like	hydrolase
S6PP	PF05116.13	gi|345004715|ref|YP_004807568.1|	-	2.9e-07	30.3	0.0	6.9e-06	25.8	0.0	2.1	2	0	0	2	2	2	1	Sucrose-6F-phosphate	phosphohydrolase
Hydrolase	PF00702.26	gi|345004715|ref|YP_004807568.1|	-	5.2e-06	26.9	6.1	2.4e-05	24.7	1.0	3.4	1	1	1	2	2	2	1	haloacid	dehalogenase-like	hydrolase
HAD	PF12710.7	gi|345004715|ref|YP_004807568.1|	-	0.00046	20.7	3.5	0.52	10.7	0.0	3.3	2	1	1	3	3	3	2	haloacid	dehalogenase-like	hydrolase
Trehalose_PPase	PF02358.16	gi|345004715|ref|YP_004807568.1|	-	0.001	18.2	0.0	0.0041	16.3	0.0	1.8	2	0	0	2	2	2	1	Trehalose-phosphatase
NIL	PF09383.10	gi|345004715|ref|YP_004807568.1|	-	0.12	12.3	0.1	16	5.4	0.0	2.3	2	0	0	2	2	2	0	NIL	domain
BMC	PF00936.19	gi|345004715|ref|YP_004807568.1|	-	0.37	10.8	3.2	8.8	6.4	0.1	2.3	2	0	0	2	2	2	0	BMC	domain
SQS_PSY	PF00494.19	gi|345004717|ref|YP_004807570.1|	-	1e-50	172.7	2.4	1.2e-50	172.5	2.4	1.1	1	0	0	1	1	1	1	Squalene/phytoene	synthase
TerB	PF05099.13	gi|345004717|ref|YP_004807570.1|	-	0.027	14.4	0.1	0.081	12.9	0.1	1.8	1	0	0	1	1	1	0	Tellurite	resistance	protein	TerB
Arg_decarbox_C	PF17944.1	gi|345004717|ref|YP_004807570.1|	-	0.095	13.3	0.0	0.41	11.2	0.0	2.1	2	0	0	2	2	2	0	Arginine	decarboxylase	C-terminal	helical	extension
Acyl-CoA_dh_1	PF00441.24	gi|345004718|ref|YP_004807571.1|	-	1.3e-48	165.0	1.4	2e-48	164.4	1.4	1.3	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	C-terminal	domain
Acyl-CoA_dh_N	PF02771.16	gi|345004718|ref|YP_004807571.1|	-	3e-35	121.3	0.1	9.1e-35	119.7	0.1	1.8	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	N-terminal	domain
Acyl-CoA_dh_2	PF08028.11	gi|345004718|ref|YP_004807571.1|	-	1.3e-25	90.2	1.1	2.4e-25	89.4	1.1	1.4	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	C-terminal	domain
Acyl-CoA_dh_M	PF02770.19	gi|345004718|ref|YP_004807571.1|	-	4.1e-24	84.6	0.0	6.9e-24	83.9	0.0	1.4	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	middle	domain
MS_channel	PF00924.18	gi|345004719|ref|YP_004807572.1|	-	1.3e-53	181.7	0.0	1.3e-53	181.7	0.0	1.9	2	0	0	2	2	2	1	Mechanosensitive	ion	channel
DUF3742	PF12553.8	gi|345004719|ref|YP_004807572.1|	-	7.3	6.7	7.3	17	5.6	6.9	1.8	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF3742)
CRS1_YhbY	PF01985.21	gi|345004720|ref|YP_004807573.1|	-	1.3e-15	57.4	0.5	1.5e-15	57.1	0.5	1.0	1	0	0	1	1	1	1	CRS1	/	YhbY	(CRM)	domain
Rpr2	PF04032.16	gi|345004721|ref|YP_004807574.1|	-	1.6e-08	34.7	0.0	1.8e-08	34.6	0.0	1.1	1	0	0	1	1	1	1	RNAse	P	Rpr2/Rpp21/SNM1	subunit	domain
Glyco_trans_1_4	PF13692.6	gi|345004722|ref|YP_004807575.1|	-	9.2e-19	68.2	0.0	1.6e-15	57.8	0.0	2.3	2	1	0	2	2	2	2	Glycosyl	transferases	group	1
Glycos_transf_1	PF00534.20	gi|345004722|ref|YP_004807575.1|	-	3.2e-18	65.9	0.0	1.4e-15	57.2	0.0	2.7	1	1	0	2	2	2	2	Glycosyl	transferases	group	1
Glyco_transf_4	PF13439.6	gi|345004722|ref|YP_004807575.1|	-	9.5e-17	61.5	0.1	5.3e-16	59.1	0.1	2.0	1	1	1	2	2	2	1	Glycosyltransferase	Family	4
Glyco_trans_1_2	PF13524.6	gi|345004722|ref|YP_004807575.1|	-	4.8e-13	49.3	0.2	8.6e-13	48.5	0.2	1.4	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_4_4	PF13579.6	gi|345004722|ref|YP_004807575.1|	-	2.2e-10	41.2	1.5	4.7e-10	40.1	1.5	1.5	1	0	0	1	1	1	1	Glycosyl	transferase	4-like	domain
DUF4224	PF13986.6	gi|345004722|ref|YP_004807575.1|	-	0.1	12.5	0.0	13	5.8	0.0	2.6	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4224)
Glyco_transf_4	PF13439.6	gi|345004723|ref|YP_004807576.1|	-	3e-29	102.2	0.4	1.3e-28	100.2	0.3	2.0	2	0	0	2	2	2	1	Glycosyltransferase	Family	4
Glycos_transf_1	PF00534.20	gi|345004723|ref|YP_004807576.1|	-	3.6e-29	101.5	0.0	3.2e-28	98.4	0.0	2.0	2	0	0	2	2	2	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.6	gi|345004723|ref|YP_004807576.1|	-	5.1e-23	82.0	0.0	1.4e-21	77.3	0.0	2.3	2	0	0	2	2	2	1	Glycosyl	transferases	group	1
Glyco_trans_4_4	PF13579.6	gi|345004723|ref|YP_004807576.1|	-	1.5e-18	67.8	4.5	5.9e-17	62.6	1.7	2.5	2	1	0	2	2	2	2	Glycosyl	transferase	4-like	domain
Glyco_trans_1_2	PF13524.6	gi|345004723|ref|YP_004807576.1|	-	8.8e-05	22.8	0.0	0.0002	21.7	0.0	1.5	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_4_2	PF13477.6	gi|345004723|ref|YP_004807576.1|	-	0.00022	21.3	0.0	0.00041	20.4	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	transferase	4-like
DUF1918	PF08940.11	gi|345004724|ref|YP_004807577.1|	-	0.00038	20.0	0.1	0.0005	19.6	0.1	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1918)
RNA_binding	PF01877.17	gi|345004725|ref|YP_004807578.1|	-	1.3e-33	115.8	0.1	1.6e-33	115.5	0.1	1.1	1	0	0	1	1	1	1	RNA	binding
AhpC-TSA	PF00578.21	gi|345004726|ref|YP_004807579.1|	-	6.9e-16	58.3	0.0	9.1e-16	57.9	0.0	1.1	1	0	0	1	1	1	1	AhpC/TSA	family
Redoxin	PF08534.10	gi|345004726|ref|YP_004807579.1|	-	5.8e-12	45.6	0.0	7.6e-12	45.2	0.0	1.1	1	0	0	1	1	1	1	Redoxin
GSHPx	PF00255.19	gi|345004726|ref|YP_004807579.1|	-	0.058	13.0	0.0	0.079	12.5	0.0	1.2	1	0	0	1	1	1	0	Glutathione	peroxidase
T4_deiodinase	PF00837.17	gi|345004726|ref|YP_004807579.1|	-	0.068	12.5	0.0	0.089	12.1	0.0	1.2	1	0	0	1	1	1	0	Iodothyronine	deiodinase
Acyl-CoA_dh_1	PF00441.24	gi|345004727|ref|YP_004807580.1|	-	2.6e-52	177.0	2.3	4.2e-52	176.3	2.3	1.3	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	C-terminal	domain
Acyl-CoA_dh_N	PF02771.16	gi|345004727|ref|YP_004807580.1|	-	5.6e-33	114.0	2.2	7.3e-33	113.6	0.1	2.3	3	1	1	4	4	4	1	Acyl-CoA	dehydrogenase,	N-terminal	domain
Acyl-CoA_dh_2	PF08028.11	gi|345004727|ref|YP_004807580.1|	-	8.6e-25	87.6	5.1	1.2e-24	87.0	5.1	1.2	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	C-terminal	domain
Acyl-CoA_dh_M	PF02770.19	gi|345004727|ref|YP_004807580.1|	-	3.1e-24	85.0	0.0	5.3e-24	84.2	0.0	1.4	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	middle	domain
HpaB_N	PF11794.8	gi|345004727|ref|YP_004807580.1|	-	0.087	12.5	2.3	0.67	9.6	0.1	2.8	2	1	0	2	2	2	0	4-hydroxyphenylacetate	3-hydroxylase	N	terminal
Snf7	PF03357.21	gi|345004727|ref|YP_004807580.1|	-	0.12	11.9	0.2	0.24	11.0	0.2	1.4	1	0	0	1	1	1	0	Snf7
DDE_Tnp_IS66	PF03050.14	gi|345004729|ref|YP_004807582.1|	-	7e-49	166.8	0.2	7e-49	166.8	0.2	2.0	2	1	0	2	2	2	1	Transposase	IS66	family
ZapB	PF06005.12	gi|345004729|ref|YP_004807582.1|	-	3e-09	37.2	6.3	9.7e-09	35.6	6.3	1.9	1	0	0	1	1	1	1	Cell	division	protein	ZapB
zf-IS66	PF13005.7	gi|345004729|ref|YP_004807582.1|	-	1.9e-05	25.0	4.3	4.5e-05	23.8	4.3	1.7	1	0	0	1	1	1	1	zinc-finger	binding	domain	of	transposase	IS66
YabA	PF06156.13	gi|345004729|ref|YP_004807582.1|	-	4.3e-05	24.1	4.2	0.00014	22.4	4.2	1.8	1	0	0	1	1	1	1	Initiation	control	protein	YabA
CASP_C	PF08172.12	gi|345004729|ref|YP_004807582.1|	-	0.00024	20.6	1.9	0.00039	19.9	1.9	1.2	1	0	0	1	1	1	1	CASP	C	terminal
JIP_LZII	PF16471.5	gi|345004729|ref|YP_004807582.1|	-	0.00056	20.0	3.4	0.0012	19.0	3.4	1.6	1	0	0	1	1	1	1	JNK-interacting	protein	leucine	zipper	II
bZIP_1	PF00170.21	gi|345004729|ref|YP_004807582.1|	-	0.0018	18.3	7.8	0.004	17.2	7.8	1.6	1	0	0	1	1	1	1	bZIP	transcription	factor
DDE_Tnp_IS240	PF13610.6	gi|345004729|ref|YP_004807582.1|	-	0.003	17.8	0.8	0.013	15.7	0.0	2.3	2	1	0	2	2	2	1	DDE	domain
SlyX	PF04102.12	gi|345004729|ref|YP_004807582.1|	-	0.0054	17.3	5.4	0.014	16.0	5.4	1.7	1	0	0	1	1	1	1	SlyX
NUDE_C	PF04880.13	gi|345004729|ref|YP_004807582.1|	-	0.013	16.0	4.4	0.034	14.6	4.4	1.6	1	0	0	1	1	1	0	NUDE	protein,	C-terminal	conserved	region
CCDC106	PF15794.5	gi|345004729|ref|YP_004807582.1|	-	0.02	14.6	3.6	0.042	13.6	3.6	1.4	1	0	0	1	1	1	0	Coiled-coil	domain-containing	protein	106
Cnn_1N	PF07989.11	gi|345004729|ref|YP_004807582.1|	-	0.026	14.7	6.4	0.056	13.6	6.4	1.5	1	0	0	1	1	1	0	Centrosomin	N-terminal	motif	1
SKA1	PF07160.12	gi|345004729|ref|YP_004807582.1|	-	0.029	14.2	0.9	0.057	13.3	0.9	1.4	1	0	0	1	1	1	0	Spindle	and	kinetochore-associated	protein	1
CENP-H	PF05837.12	gi|345004729|ref|YP_004807582.1|	-	0.03	14.7	3.3	0.072	13.5	3.3	1.6	1	0	0	1	1	1	0	Centromere	protein	H	(CENP-H)
DUF4201	PF13870.6	gi|345004729|ref|YP_004807582.1|	-	0.039	13.7	3.6	0.078	12.7	3.6	1.5	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4201)
RP-C_C	PF11800.8	gi|345004729|ref|YP_004807582.1|	-	0.04	14.0	1.2	0.082	13.0	1.2	1.5	1	0	0	1	1	1	0	Replication	protein	C	C-terminal	region
V_ATPase_I	PF01496.19	gi|345004729|ref|YP_004807582.1|	-	0.049	11.6	2.1	0.07	11.1	2.1	1.1	1	0	0	1	1	1	0	V-type	ATPase	116kDa	subunit	family
HSBP1	PF06825.12	gi|345004729|ref|YP_004807582.1|	-	0.06	13.2	0.3	0.11	12.3	0.3	1.4	1	0	0	1	1	1	0	Heat	shock	factor	binding	protein	1
XhlA	PF10779.9	gi|345004729|ref|YP_004807582.1|	-	0.067	13.4	5.8	0.18	12.0	5.8	1.7	1	0	0	1	1	1	0	Haemolysin	XhlA
FlaC_arch	PF05377.11	gi|345004729|ref|YP_004807582.1|	-	0.072	13.5	3.1	0.17	12.3	3.1	1.6	1	0	0	1	1	1	0	Flagella	accessory	protein	C	(FlaC)
TSC22	PF01166.18	gi|345004729|ref|YP_004807582.1|	-	0.087	13.1	14.9	0.11	12.8	7.5	3.3	2	1	1	3	3	3	0	TSC-22/dip/bun	family
HOOK	PF05622.12	gi|345004729|ref|YP_004807582.1|	-	0.093	10.9	3.9	0.13	10.3	3.9	1.1	1	0	0	1	1	1	0	HOOK	protein
GAS	PF13851.6	gi|345004729|ref|YP_004807582.1|	-	0.12	11.8	6.2	0.21	10.9	6.2	1.3	1	0	0	1	1	1	0	Growth-arrest	specific	micro-tubule	binding
DUF4988	PF16378.5	gi|345004729|ref|YP_004807582.1|	-	0.14	11.8	3.3	0.89	9.2	1.5	2.2	2	0	0	2	2	2	0	Domain	of	unknown	function
HALZ	PF02183.18	gi|345004729|ref|YP_004807582.1|	-	0.2	11.9	7.1	0.26	11.6	6.1	1.8	2	0	0	2	2	1	0	Homeobox	associated	leucine	zipper
EMP24_GP25L	PF01105.24	gi|345004729|ref|YP_004807582.1|	-	0.24	11.3	5.2	4.1	7.3	4.2	2.2	2	0	0	2	2	2	0	emp24/gp25L/p24	family/GOLD
Synaptobrevin	PF00957.21	gi|345004729|ref|YP_004807582.1|	-	0.25	11.1	1.7	0.43	10.4	1.7	1.3	1	0	0	1	1	1	0	Synaptobrevin
Spc24	PF08286.11	gi|345004729|ref|YP_004807582.1|	-	0.27	11.5	3.5	0.57	10.5	3.5	1.5	1	0	0	1	1	1	0	Spc24	subunit	of	Ndc80
DivIC	PF04977.15	gi|345004729|ref|YP_004807582.1|	-	0.31	10.8	8.4	0.77	9.6	8.0	1.9	1	1	0	1	1	1	0	Septum	formation	initiator
SpoVR	PF04293.13	gi|345004729|ref|YP_004807582.1|	-	0.35	9.5	4.7	0.55	8.9	4.7	1.2	1	0	0	1	1	1	0	SpoVR	like	protein
Shugoshin_N	PF07558.11	gi|345004729|ref|YP_004807582.1|	-	0.62	10.0	6.8	0.15	11.9	2.5	2.0	1	1	1	2	2	2	0	Shugoshin	N-terminal	coiled-coil	region
Jnk-SapK_ap_N	PF09744.9	gi|345004729|ref|YP_004807582.1|	-	0.68	10.1	7.3	1.9	8.7	7.3	1.7	1	0	0	1	1	1	0	JNK_SAPK-associated	protein-1
Chibby	PF14645.6	gi|345004729|ref|YP_004807582.1|	-	0.7	10.3	4.1	1.7	9.1	4.1	1.6	1	0	0	1	1	1	0	Chibby	family
APG6_N	PF17675.1	gi|345004729|ref|YP_004807582.1|	-	0.77	10.3	9.2	1.5	9.3	9.2	1.5	1	0	0	1	1	1	0	Apg6	coiled-coil	region
ADIP	PF11559.8	gi|345004729|ref|YP_004807582.1|	-	0.78	9.8	7.1	1.7	8.7	7.1	1.5	1	0	0	1	1	1	0	Afadin-	and	alpha	-actinin-Binding
Prefoldin_2	PF01920.20	gi|345004729|ref|YP_004807582.1|	-	0.92	9.5	8.3	1.8	8.6	8.3	1.4	1	0	0	1	1	1	0	Prefoldin	subunit
bZIP_2	PF07716.15	gi|345004729|ref|YP_004807582.1|	-	1.2	9.3	14.7	8.7	6.5	6.5	2.6	1	1	1	2	2	2	0	Basic	region	leucine	zipper
GIT_CC	PF16559.5	gi|345004729|ref|YP_004807582.1|	-	1.2	9.0	5.9	2.4	8.1	5.9	1.5	1	0	0	1	1	1	0	GIT	coiled-coil	Rho	guanine	nucleotide	exchange	factor
GrpE	PF01025.19	gi|345004729|ref|YP_004807582.1|	-	1.2	8.8	5.5	2.3	7.9	5.5	1.4	1	0	0	1	1	1	0	GrpE
DUF2205	PF10224.9	gi|345004729|ref|YP_004807582.1|	-	1.5	8.9	5.6	3.6	7.7	5.6	1.6	1	0	0	1	1	1	0	Short	coiled-coil	protein
Astro_capsid_p	PF12226.8	gi|345004729|ref|YP_004807582.1|	-	1.5	7.9	4.8	2.3	7.3	4.8	1.2	1	0	0	1	1	1	0	Turkey	astrovirus	capsid	protein
DUF3552	PF12072.8	gi|345004729|ref|YP_004807582.1|	-	2.1	7.7	7.5	3.7	6.9	7.5	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3552)
DUF3450	PF11932.8	gi|345004729|ref|YP_004807582.1|	-	2.3	7.4	8.2	0.46	9.8	3.0	2.3	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF3450)
NRBF2	PF08961.10	gi|345004729|ref|YP_004807582.1|	-	2.4	7.7	14.9	0.031	13.9	7.5	1.6	2	0	0	2	2	1	0	Nuclear	receptor-binding	factor	2,	autophagy	regulator
UPF0242	PF06785.11	gi|345004729|ref|YP_004807582.1|	-	7.3	6.6	7.8	2.4	8.2	5.0	1.6	2	0	0	2	2	1	0	Uncharacterised	protein	family	(UPF0242)	N-terminus
DAO	PF01266.24	gi|345004730|ref|YP_004807583.1|	-	2e-72	244.7	3.3	2.3e-72	244.5	3.3	1.0	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
FAD_binding_2	PF00890.24	gi|345004730|ref|YP_004807583.1|	-	2.7e-12	46.5	5.4	6.7e-12	45.2	5.4	1.6	1	1	0	1	1	1	1	FAD	binding	domain
Pyr_redox_2	PF07992.14	gi|345004730|ref|YP_004807583.1|	-	9.1e-09	34.9	0.2	0.00054	19.3	0.1	2.2	2	0	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox	PF00070.27	gi|345004730|ref|YP_004807583.1|	-	4.9e-08	33.4	1.7	0.00079	19.9	2.4	2.5	2	0	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_binding_8	PF13450.6	gi|345004730|ref|YP_004807583.1|	-	1.2e-06	28.6	0.2	3.5e-06	27.2	0.2	1.8	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
FAD_oxidored	PF12831.7	gi|345004730|ref|YP_004807583.1|	-	1.3e-05	24.8	4.7	4.5e-05	23.0	4.7	1.8	1	1	0	1	1	1	1	FAD	dependent	oxidoreductase
Amino_oxidase	PF01593.24	gi|345004730|ref|YP_004807583.1|	-	3.4e-05	23.3	0.5	0.0024	17.2	0.0	2.1	2	0	0	2	2	2	1	Flavin	containing	amine	oxidoreductase
HI0933_like	PF03486.14	gi|345004730|ref|YP_004807583.1|	-	3.7e-05	22.6	1.4	0.022	13.5	1.4	2.1	2	0	0	2	2	2	2	HI0933-like	protein
FAD_binding_3	PF01494.19	gi|345004730|ref|YP_004807583.1|	-	0.0002	20.7	3.3	0.0014	17.9	2.7	2.1	2	0	0	2	2	2	1	FAD	binding	domain
GIDA	PF01134.22	gi|345004730|ref|YP_004807583.1|	-	0.00021	20.5	0.9	0.0037	16.4	1.2	2.0	2	0	0	2	2	2	1	Glucose	inhibited	division	protein	A
Thi4	PF01946.17	gi|345004730|ref|YP_004807583.1|	-	0.002	17.4	2.3	0.0022	17.3	0.9	1.7	2	0	0	2	2	2	1	Thi4	family
NAD_binding_7	PF13241.6	gi|345004730|ref|YP_004807583.1|	-	0.0035	17.8	0.1	0.0057	17.1	0.1	1.5	1	0	0	1	1	1	1	Putative	NAD(P)-binding
Pyr_redox_3	PF13738.6	gi|345004730|ref|YP_004807583.1|	-	0.0036	16.6	0.2	0.023	13.9	0.7	1.9	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
AlaDh_PNT_C	PF01262.21	gi|345004730|ref|YP_004807583.1|	-	0.009	15.3	0.6	0.015	14.6	0.6	1.4	1	0	0	1	1	1	1	Alanine	dehydrogenase/PNT,	C-terminal	domain
UDPG_MGDP_dh_N	PF03721.14	gi|345004730|ref|YP_004807583.1|	-	0.012	15.2	1.3	0.021	14.4	1.3	1.4	1	0	0	1	1	1	0	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
3HCDH_N	PF02737.18	gi|345004730|ref|YP_004807583.1|	-	0.037	13.9	0.6	0.037	13.9	0.6	1.7	2	0	0	2	2	2	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
Trp_halogenase	PF04820.14	gi|345004730|ref|YP_004807583.1|	-	0.77	8.5	2.1	0.94	8.2	0.8	1.7	2	0	0	2	2	2	0	Tryptophan	halogenase
OCD_Mu_crystall	PF02423.15	gi|345004731|ref|YP_004807584.1|	-	2.2e-59	201.0	2.1	2.5e-59	200.8	2.1	1.0	1	0	0	1	1	1	1	Ornithine	cyclodeaminase/mu-crystallin	family
Shikimate_DH	PF01488.20	gi|345004731|ref|YP_004807584.1|	-	0.00033	20.7	0.0	0.00069	19.7	0.0	1.6	1	0	0	1	1	1	1	Shikimate	/	quinate	5-dehydrogenase
GFO_IDH_MocA	PF01408.22	gi|345004731|ref|YP_004807584.1|	-	0.014	16.2	0.1	0.03	15.2	0.1	1.6	1	0	0	1	1	1	0	Oxidoreductase	family,	NAD-binding	Rossmann	fold
Metal_resist	PF13801.6	gi|345004731|ref|YP_004807584.1|	-	0.026	14.7	2.4	0.14	12.3	0.3	2.6	2	0	0	2	2	2	0	Heavy-metal	resistance
HalX	PF08663.10	gi|345004732|ref|YP_004807585.1|	-	6.2e-26	90.5	7.9	2.1e-25	88.8	7.9	2.0	1	0	0	1	1	1	1	HalX	domain
Response_reg	PF00072.24	gi|345004732|ref|YP_004807585.1|	-	6.9e-19	68.1	0.1	1.3e-18	67.2	0.1	1.4	1	0	0	1	1	1	1	Response	regulator	receiver	domain
Nbl1_Borealin_N	PF10444.9	gi|345004732|ref|YP_004807585.1|	-	0.036	13.7	2.5	0.17	11.6	0.2	2.3	2	0	0	2	2	2	0	Nbl1	/	Borealin	N	terminal
Bud13	PF09736.9	gi|345004732|ref|YP_004807585.1|	-	0.091	13.2	0.2	0.13	12.7	0.2	1.2	1	0	0	1	1	1	0	Pre-mRNA-splicing	factor	of	RES	complex
IMPDH	PF00478.25	gi|345004733|ref|YP_004807586.1|	-	3.4e-138	460.4	12.2	3.8e-138	460.2	12.2	1.0	1	0	0	1	1	1	1	IMP	dehydrogenase	/	GMP	reductase	domain
CBS	PF00571.28	gi|345004733|ref|YP_004807586.1|	-	3.2e-22	78.7	4.2	3.9e-10	40.0	0.2	2.8	3	0	0	3	3	3	2	CBS	domain
NMO	PF03060.15	gi|345004733|ref|YP_004807586.1|	-	1.5e-11	44.3	6.1	7.9e-07	28.8	2.9	2.3	2	0	0	2	2	2	2	Nitronate	monooxygenase
FMN_dh	PF01070.18	gi|345004733|ref|YP_004807586.1|	-	2.5e-09	36.7	3.8	4e-09	36.0	3.8	1.4	1	0	0	1	1	1	1	FMN-dependent	dehydrogenase
Glu_synthase	PF01645.17	gi|345004733|ref|YP_004807586.1|	-	4e-05	22.9	5.4	7.6e-05	22.0	5.4	1.4	1	0	0	1	1	1	1	Conserved	region	in	glutamate	synthase
ThiG	PF05690.14	gi|345004733|ref|YP_004807586.1|	-	6.6e-05	22.3	8.5	0.00011	21.5	1.2	2.5	2	0	0	2	2	2	1	Thiazole	biosynthesis	protein	ThiG
DHO_dh	PF01180.21	gi|345004733|ref|YP_004807586.1|	-	0.00015	21.1	1.9	0.00023	20.5	0.9	1.8	2	0	0	2	2	2	1	Dihydroorotate	dehydrogenase
His_biosynth	PF00977.21	gi|345004733|ref|YP_004807586.1|	-	0.00027	20.5	1.0	0.00096	18.7	0.1	2.1	1	1	1	2	2	2	1	Histidine	biosynthesis	protein
Dus	PF01207.17	gi|345004733|ref|YP_004807586.1|	-	0.0017	17.5	0.1	0.0032	16.6	0.1	1.4	1	0	0	1	1	1	1	Dihydrouridine	synthase	(Dus)
G3P_antiterm	PF04309.12	gi|345004733|ref|YP_004807586.1|	-	0.057	12.8	0.6	0.13	11.7	0.2	1.8	2	0	0	2	2	2	0	Glycerol-3-phosphate	responsive	antiterminator
HTH_20	PF12840.7	gi|345004735|ref|YP_004807588.1|	-	1.3e-12	47.6	0.4	2.6e-12	46.6	0.4	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
MarR_2	PF12802.7	gi|345004735|ref|YP_004807588.1|	-	6.5e-06	26.0	0.1	1.5e-05	24.8	0.1	1.6	1	0	0	1	1	1	1	MarR	family
HTH_5	PF01022.20	gi|345004735|ref|YP_004807588.1|	-	0.0018	18.1	0.0	0.0029	17.4	0.0	1.3	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_24	PF13412.6	gi|345004735|ref|YP_004807588.1|	-	0.018	14.6	0.0	0.048	13.2	0.0	1.8	1	1	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
DUF4147	PF13660.6	gi|345004736|ref|YP_004807589.1|	-	3.7e-75	252.4	3.4	6.2e-75	251.7	3.4	1.4	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4147)
MOFRL	PF05161.13	gi|345004736|ref|YP_004807589.1|	-	8.2e-29	100.0	1.3	8.2e-29	100.0	1.3	2.5	2	0	0	2	2	2	1	MOFRL	family
TraB	PF01963.17	gi|345004737|ref|YP_004807590.1|	-	1.9e-27	96.8	0.0	3.9e-16	59.7	0.0	2.1	2	0	0	2	2	2	2	TraB	family
PAP2	PF01569.21	gi|345004737|ref|YP_004807590.1|	-	3	7.6	9.1	14	5.5	7.4	2.8	2	1	0	2	2	2	0	PAP2	superfamily
Peptidase_M50	PF02163.22	gi|345004738|ref|YP_004807591.1|	-	0.00016	21.0	15.4	0.081	12.2	1.2	3.4	1	1	0	2	2	2	2	Peptidase	family	M50
AIRS_C	PF02769.22	gi|345004739|ref|YP_004807592.1|	-	4.5e-20	72.3	0.0	8.4e-20	71.5	0.0	1.4	1	0	0	1	1	1	1	AIR	synthase	related	protein,	C-terminal	domain
AIRS	PF00586.24	gi|345004739|ref|YP_004807592.1|	-	1.6e-14	54.3	5.2	1.6e-14	54.3	4.0	1.7	2	0	0	2	2	2	1	AIR	synthase	related	protein,	N-terminal	domain
RRM_1	PF00076.22	gi|345004739|ref|YP_004807592.1|	-	0.021	14.7	0.0	0.058	13.2	0.0	1.7	2	0	0	2	2	2	0	RNA	recognition	motif.	(a.k.a.	RRM,	RBD,	or	RNP	domain)
DSBA	PF01323.20	gi|345004740|ref|YP_004807593.1|	-	5e-20	72.1	0.0	5.9e-20	71.9	0.0	1.0	1	0	0	1	1	1	1	DSBA-like	thioredoxin	domain
Thioredoxin_4	PF13462.6	gi|345004740|ref|YP_004807593.1|	-	4.7e-09	36.6	0.0	9e-07	29.2	0.0	2.1	2	0	0	2	2	2	2	Thioredoxin
CBS	PF00571.28	gi|345004741|ref|YP_004807594.1|	-	4.5e-24	84.7	1.0	1.2e-11	44.9	0.0	2.3	2	0	0	2	2	2	2	CBS	domain
HTH_31	PF13560.6	gi|345004741|ref|YP_004807594.1|	-	3.4e-12	46.5	2.2	3.4e-12	46.5	2.2	1.6	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_3	PF01381.22	gi|345004741|ref|YP_004807594.1|	-	3.6e-10	39.7	0.0	6.3e-10	39.0	0.0	1.4	1	0	0	1	1	1	1	Helix-turn-helix
HTH_19	PF12844.7	gi|345004741|ref|YP_004807594.1|	-	0.00012	22.0	0.0	0.00021	21.2	0.0	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_37	PF13744.6	gi|345004741|ref|YP_004807594.1|	-	0.00035	20.4	0.0	0.00083	19.3	0.0	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_25	PF13413.6	gi|345004741|ref|YP_004807594.1|	-	0.00058	19.7	0.2	0.0013	18.5	0.1	1.6	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_26	PF13443.6	gi|345004741|ref|YP_004807594.1|	-	0.0041	17.5	0.0	0.0075	16.7	0.0	1.4	1	0	0	1	1	1	1	Cro/C1-type	HTH	DNA-binding	domain
Pou	PF00157.17	gi|345004741|ref|YP_004807594.1|	-	0.042	13.8	0.0	0.16	11.9	0.0	2.0	1	1	0	1	1	1	0	Pou	domain	-	N-terminal	to	homeobox	domain
IF-2	PF11987.8	gi|345004741|ref|YP_004807594.1|	-	0.15	12.2	2.0	13	6.0	0.1	2.6	2	1	0	2	2	2	0	Translation-initiation	factor	2
PQQ_2	PF13360.6	gi|345004742|ref|YP_004807595.1|	-	4.7e-16	59.1	18.1	6.8e-12	45.5	8.2	3.1	1	1	1	2	2	2	2	PQQ-like	domain
PQQ	PF01011.21	gi|345004742|ref|YP_004807595.1|	-	3.9e-12	45.5	5.2	0.0088	15.9	0.0	5.6	6	1	1	7	7	7	3	PQQ	enzyme	repeat
PQQ_3	PF13570.6	gi|345004742|ref|YP_004807595.1|	-	2.4e-08	34.2	19.5	0.0053	17.2	0.1	7.1	7	0	0	7	7	7	2	PQQ-like	domain
VCBS	PF13517.6	gi|345004742|ref|YP_004807595.1|	-	3e-08	34.1	16.9	1.6e-05	25.4	2.2	4.8	2	1	2	4	4	4	3	Repeat	domain	in	Vibrio,	Colwellia,	Bradyrhizobium	and	Shewanella
BBS2_Mid	PF14783.6	gi|345004742|ref|YP_004807595.1|	-	0.00014	21.8	1.0	0.11	12.6	0.0	4.0	3	1	1	4	4	4	1	Ciliary	BBSome	complex	subunit	2,	middle	region
Itfg2	PF15907.5	gi|345004742|ref|YP_004807595.1|	-	0.00061	18.9	6.1	1.6	7.7	0.1	4.0	3	1	1	4	4	4	2	Integrin-alpha	FG-GAP	repeat-containing	protein	2
FG-GAP	PF01839.23	gi|345004742|ref|YP_004807595.1|	-	0.0031	17.6	18.9	0.021	14.9	0.9	5.0	5	0	0	5	5	5	3	FG-GAP	repeat
BBS1	PF14779.6	gi|345004742|ref|YP_004807595.1|	-	0.15	11.5	0.2	22	4.4	0.1	3.2	3	1	0	3	3	3	0	Ciliary	BBSome	complex	subunit	1
PT-VENN	PF04829.13	gi|345004742|ref|YP_004807595.1|	-	0.45	10.6	2.5	3.4	7.8	0.2	2.5	2	0	0	2	2	2	0	Pre-toxin	domain	with	VENN	motif
PliI	PF16743.5	gi|345004742|ref|YP_004807595.1|	-	0.53	10.0	2.6	18	5.1	0.0	3.5	4	0	0	4	4	4	0	Periplasmic	lysozyme	inhibitor	of	I-type	lysozyme
DUF555	PF04475.12	gi|345004743|ref|YP_004807596.1|	-	3.6e-46	155.6	0.0	4.2e-46	155.4	0.0	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF555)
GCH_III	PF05165.12	gi|345004744|ref|YP_004807597.1|	-	4.2e-87	291.5	0.0	5.4e-87	291.1	0.0	1.0	1	0	0	1	1	1	1	GTP	cyclohydrolase	III
GGDEF_2	PF17853.1	gi|345004744|ref|YP_004807597.1|	-	0.0002	21.6	0.0	0.016	15.5	0.0	2.2	1	1	1	2	2	2	2	GGDEF-like	domain
mCpol	PF18182.1	gi|345004744|ref|YP_004807597.1|	-	0.01	16.2	0.0	0.042	14.2	0.0	1.8	2	0	0	2	2	2	0	minimal	CRISPR	polymerase	domain
DUF4112	PF13430.6	gi|345004746|ref|YP_004807599.1|	-	2.9e-31	107.8	0.1	3.5e-31	107.6	0.1	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4112)
SurE	PF01975.17	gi|345004747|ref|YP_004807600.1|	-	6e-43	146.9	0.1	7.6e-43	146.6	0.1	1.1	1	0	0	1	1	1	1	Survival	protein	SurE
IF-2B	PF01008.17	gi|345004747|ref|YP_004807600.1|	-	0.13	11.5	0.2	0.17	11.0	0.2	1.2	1	0	0	1	1	1	0	Initiation	factor	2	subunit	family
DUF4112	PF13430.6	gi|345004748|ref|YP_004807601.1|	-	1.1e-30	106.0	0.2	1.2e-30	105.9	0.2	1.0	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4112)
UPF0058	PF01893.16	gi|345004749|ref|YP_004807602.1|	-	5.8e-34	116.2	0.4	6.5e-34	116.1	0.4	1.0	1	0	0	1	1	1	1	Uncharacterised	protein	family	UPF0058
T7SS_ESX_EspC	PF10824.8	gi|345004749|ref|YP_004807602.1|	-	0.011	16.2	0.0	0.018	15.5	0.0	1.2	1	0	0	1	1	1	0	Excreted	virulence	factor	EspC,	type	VII	ESX	diderm
ABA_WDS	PF02496.16	gi|345004749|ref|YP_004807602.1|	-	0.011	16.1	0.2	0.016	15.6	0.2	1.3	1	0	0	1	1	1	0	ABA/WDS	induced	protein
IclR	PF01614.18	gi|345004750|ref|YP_004807603.1|	-	0.096	12.5	0.0	0.12	12.2	0.0	1.2	1	0	0	1	1	1	0	Bacterial	transcriptional	regulator
Amidase	PF01425.21	gi|345004751|ref|YP_004807604.1|	-	1.4e-68	231.9	1.7	1.6e-66	225.1	1.7	2.4	1	1	0	1	1	1	1	Amidase
Oxidored_molyb	PF00174.19	gi|345004752|ref|YP_004807605.1|	-	1.7e-32	112.4	0.0	2e-32	112.1	0.0	1.1	1	0	0	1	1	1	1	Oxidoreductase	molybdopterin	binding	domain
Chorismate_bind	PF00425.18	gi|345004753|ref|YP_004807606.1|	-	7.9e-69	232.1	0.0	1e-68	231.7	0.0	1.1	1	0	0	1	1	1	1	chorismate	binding	enzyme
TPP_enzyme_N	PF02776.18	gi|345004754|ref|YP_004807607.1|	-	3.1e-36	124.6	0.1	1.1e-35	122.8	0.1	2.0	2	0	0	2	2	2	1	Thiamine	pyrophosphate	enzyme,	N-terminal	TPP	binding	domain
TPP_enzyme_C	PF02775.21	gi|345004754|ref|YP_004807607.1|	-	1.3e-08	34.8	0.0	3e-08	33.6	0.0	1.6	1	0	0	1	1	1	1	Thiamine	pyrophosphate	enzyme,	C-terminal	TPP	binding	domain
TPP_enzyme_M_2	PF16582.5	gi|345004754|ref|YP_004807607.1|	-	1.4e-06	28.1	0.0	2e-06	27.6	0.0	1.2	1	0	0	1	1	1	1	Middle	domain	of	thiamine	pyrophosphate
PucR	PF07905.11	gi|345004754|ref|YP_004807607.1|	-	0.13	12.5	0.0	19	5.6	0.0	2.8	3	0	0	3	3	3	0	Purine	catabolism	regulatory	protein-like	family
ECH_1	PF00378.20	gi|345004755|ref|YP_004807608.1|	-	8.5e-53	179.2	0.0	8.8e-52	175.9	0.0	1.9	1	1	0	1	1	1	1	Enoyl-CoA	hydratase/isomerase
ECH_2	PF16113.5	gi|345004755|ref|YP_004807608.1|	-	6.1e-16	58.8	0.0	1.3e-15	57.8	0.0	1.5	1	1	0	1	1	1	1	Enoyl-CoA	hydratase/isomerase
NUDIX	PF00293.28	gi|345004756|ref|YP_004807609.1|	-	3.7e-11	43.2	0.5	5.5e-11	42.6	0.5	1.3	1	0	0	1	1	1	1	NUDIX	domain
UbiA	PF01040.18	gi|345004757|ref|YP_004807610.1|	-	2.9e-38	131.6	18.0	4e-38	131.2	18.0	1.1	1	0	0	1	1	1	1	UbiA	prenyltransferase	family
MR_MLE_C	PF13378.6	gi|345004758|ref|YP_004807611.1|	-	2.2e-42	145.1	4.5	3.9e-42	144.3	4.5	1.3	1	0	0	1	1	1	1	Enolase	C-terminal	domain-like
ECH_1	PF00378.20	gi|345004759|ref|YP_004807612.1|	-	1.1e-50	172.3	0.0	1.3e-50	172.1	0.0	1.0	1	0	0	1	1	1	1	Enoyl-CoA	hydratase/isomerase
ECH_2	PF16113.5	gi|345004759|ref|YP_004807612.1|	-	8.5e-32	110.9	0.0	5.3e-28	98.5	0.0	2.0	1	1	1	2	2	2	2	Enoyl-CoA	hydratase/isomerase
Na_H_antiporter	PF03553.14	gi|345004760|ref|YP_004807613.1|	-	2e-55	188.2	34.5	1e-51	176.0	14.6	2.0	1	1	1	2	2	2	2	Na+/H+	antiporter	family
CTC1	PF15489.6	gi|345004760|ref|YP_004807613.1|	-	0.051	11.1	0.0	0.07	10.6	0.0	1.0	1	0	0	1	1	1	0	CST,	telomere	maintenance,	complex	subunit	CTC1
Phosphatase	PF15698.5	gi|345004760|ref|YP_004807613.1|	-	0.17	11.0	0.0	0.28	10.3	0.0	1.2	1	0	0	1	1	1	0	Phosphatase
Cys_Met_Meta_PP	PF01053.20	gi|345004761|ref|YP_004807614.1|	-	3.7e-121	404.3	0.0	4.1e-121	404.1	0.0	1.0	1	0	0	1	1	1	1	Cys/Met	metabolism	PLP-dependent	enzyme
Beta_elim_lyase	PF01212.21	gi|345004761|ref|YP_004807614.1|	-	0.00094	18.5	0.0	0.0022	17.3	0.0	1.6	1	1	0	1	1	1	1	Beta-eliminating	lyase
Aminotran_5	PF00266.19	gi|345004761|ref|YP_004807614.1|	-	0.0018	17.3	0.1	0.003	16.6	0.1	1.3	1	0	0	1	1	1	1	Aminotransferase	class-V
DUF4350	PF14258.6	gi|345004761|ref|YP_004807614.1|	-	0.0072	16.7	0.3	1.9	9.0	0.1	3.6	3	1	0	3	3	3	1	Domain	of	unknown	function	(DUF4350)
DegT_DnrJ_EryC1	PF01041.17	gi|345004761|ref|YP_004807614.1|	-	0.01	15.2	1.8	0.01	15.2	1.8	1.5	2	0	0	2	2	2	0	DegT/DnrJ/EryC1/StrS	aminotransferase	family
Abhydrolase_1	PF00561.20	gi|345004762|ref|YP_004807615.1|	-	7.9e-28	97.8	0.7	1.1e-27	97.4	0.7	1.2	1	0	0	1	1	1	1	alpha/beta	hydrolase	fold
Abhydrolase_4	PF08386.10	gi|345004762|ref|YP_004807615.1|	-	0.023	14.8	0.2	0.069	13.3	0.0	1.8	2	0	0	2	2	2	0	TAP-like	protein
TetR_C_6	PF13977.6	gi|345004763|ref|YP_004807616.1|	-	8.4e-12	45.3	0.3	8.4e-12	45.3	0.3	2.2	3	0	0	3	3	3	1	BetI-type	transcriptional	repressor,	C-terminal
TetR_N	PF00440.23	gi|345004763|ref|YP_004807616.1|	-	4.9e-10	39.0	0.1	1e-09	38.1	0.1	1.6	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	tetR	family
TetR_C_17	PF17922.1	gi|345004763|ref|YP_004807616.1|	-	0.00019	21.4	0.0	0.0004	20.4	0.0	1.5	1	0	0	1	1	1	1	Tetracyclin	repressor-like,	C-terminal	domain
TetR_C_25	PF17933.1	gi|345004763|ref|YP_004807616.1|	-	0.0016	18.7	0.1	0.0041	17.4	0.1	1.7	1	0	0	1	1	1	1	Tetracyclin	repressor-like,	C-terminal	domain
TetR_C_11	PF16859.5	gi|345004763|ref|YP_004807616.1|	-	0.012	16.0	0.6	0.012	16.0	0.6	1.9	2	1	0	2	2	2	0	Tetracyclin	repressor-like,	C-terminal	domain
TetR_C_7	PF14246.6	gi|345004763|ref|YP_004807616.1|	-	0.017	15.1	0.2	0.043	13.8	0.1	1.7	2	0	0	2	2	2	0	AefR-like	transcriptional	repressor,	C-terminal	domain
TetR_C_27	PF17935.1	gi|345004763|ref|YP_004807616.1|	-	0.027	14.5	0.3	0.1	12.7	0.3	2.0	1	1	1	2	2	2	0	Tetracyclin	repressor-like,	C-terminal	domain
MatE	PF01554.18	gi|345004764|ref|YP_004807617.1|	-	6.1e-62	208.0	35.0	2e-36	125.1	13.8	2.6	3	0	0	3	3	3	2	MatE
Polysacc_synt_C	PF14667.6	gi|345004764|ref|YP_004807617.1|	-	8.1e-06	26.0	38.7	0.0074	16.4	0.3	4.5	3	1	0	3	3	3	3	Polysaccharide	biosynthesis	C-terminal	domain
MarR	PF01047.22	gi|345004765|ref|YP_004807618.1|	-	0.0036	17.2	0.0	0.0051	16.7	0.0	1.2	1	0	0	1	1	1	1	MarR	family
HTH_34	PF13601.6	gi|345004765|ref|YP_004807618.1|	-	0.007	16.5	0.0	0.0087	16.2	0.0	1.1	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
HTH_20	PF12840.7	gi|345004765|ref|YP_004807618.1|	-	0.033	14.3	0.0	0.044	13.9	0.0	1.1	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_27	PF13463.6	gi|345004765|ref|YP_004807618.1|	-	0.035	14.6	0.0	0.046	14.2	0.0	1.2	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
DUF502	PF04367.13	gi|345004766|ref|YP_004807619.1|	-	7.5e-28	96.5	0.1	7.5e-28	96.5	0.1	1.6	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF502)
MMPL	PF03176.15	gi|345004767|ref|YP_004807620.1|	-	3.1e-44	151.3	30.2	1.6e-25	89.7	15.6	2.5	2	0	0	2	2	2	2	MMPL	family
Sterol-sensing	PF12349.8	gi|345004767|ref|YP_004807620.1|	-	5.1e-14	52.4	10.0	1.1e-08	35.0	1.6	2.9	2	0	0	2	2	2	2	Sterol-sensing	domain	of	SREBP	cleavage-activation
Patched	PF02460.18	gi|345004767|ref|YP_004807620.1|	-	9.3e-11	40.6	21.0	3.5e-06	25.4	7.7	2.1	2	0	0	2	2	2	2	Patched	family
SecD_SecF	PF02355.16	gi|345004767|ref|YP_004807620.1|	-	0.015	14.7	24.1	0.015	14.6	6.3	2.6	2	0	0	2	2	2	0	Protein	export	membrane	protein
ACR_tran	PF00873.19	gi|345004767|ref|YP_004807620.1|	-	1.2	6.7	22.1	1.1	6.8	11.0	2.1	2	0	0	2	2	2	0	AcrB/AcrD/AcrF	family
ThiS	PF02597.20	gi|345004768|ref|YP_004807621.1|	-	4.7e-07	30.3	0.0	2.7e-06	27.9	0.0	1.9	1	1	0	1	1	1	1	ThiS	family
Cupin_2	PF07883.11	gi|345004769|ref|YP_004807622.1|	-	1.3e-09	37.6	0.0	1.6e-09	37.3	0.0	1.2	1	0	0	1	1	1	1	Cupin	domain
AraC_binding	PF02311.19	gi|345004769|ref|YP_004807622.1|	-	8.5e-05	22.5	0.0	0.00011	22.1	0.0	1.2	1	0	0	1	1	1	1	AraC-like	ligand	binding	domain
Cupin_3	PF05899.12	gi|345004769|ref|YP_004807622.1|	-	0.0034	17.0	0.0	0.0042	16.7	0.0	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF861)
Pirin_C	PF05726.13	gi|345004769|ref|YP_004807622.1|	-	0.0065	16.8	0.0	0.0085	16.4	0.0	1.1	1	0	0	1	1	1	1	Pirin	C-terminal	cupin	domain
HutD	PF05962.11	gi|345004769|ref|YP_004807622.1|	-	0.018	15.0	0.0	0.023	14.7	0.0	1.1	1	0	0	1	1	1	0	HutD
Pirin	PF02678.16	gi|345004769|ref|YP_004807622.1|	-	0.037	14.0	0.0	0.04	13.9	0.0	1.2	1	0	0	1	1	1	0	Pirin
Pirin_C_2	PF17954.1	gi|345004769|ref|YP_004807622.1|	-	0.069	13.3	0.0	0.1	12.8	0.0	1.2	1	0	0	1	1	1	0	Quercetinase	C-terminal	cupin	domain
Amino_oxidase	PF01593.24	gi|345004770|ref|YP_004807623.1|	-	2.4e-30	106.2	0.3	2.7e-30	106.0	0.3	1.1	1	0	0	1	1	1	1	Flavin	containing	amine	oxidoreductase
NAD_binding_8	PF13450.6	gi|345004770|ref|YP_004807623.1|	-	6.1e-11	42.4	0.1	1.7e-10	41.0	0.1	1.8	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
DAO	PF01266.24	gi|345004770|ref|YP_004807623.1|	-	0.00082	19.1	3.7	0.002	17.7	0.2	2.3	2	1	0	2	2	2	1	FAD	dependent	oxidoreductase
FAD_binding_3	PF01494.19	gi|345004770|ref|YP_004807623.1|	-	0.0069	15.7	0.1	0.011	15.0	0.1	1.4	1	0	0	1	1	1	1	FAD	binding	domain
Lycopene_cycl	PF05834.12	gi|345004770|ref|YP_004807623.1|	-	0.047	12.7	0.2	0.07	12.2	0.2	1.2	1	0	0	1	1	1	0	Lycopene	cyclase	protein
PaaB	PF06243.11	gi|345004772|ref|YP_004807625.1|	-	1.6e-06	28.2	0.0	2.5e-06	27.6	0.0	1.3	1	0	0	1	1	1	1	Phenylacetic	acid	degradation	B
GYD	PF08734.11	gi|345004773|ref|YP_004807626.1|	-	5.7e-28	96.7	0.1	6.3e-28	96.6	0.1	1.0	1	0	0	1	1	1	1	GYD	domain
DDE_Tnp_1	PF01609.21	gi|345004774|ref|YP_004807627.1|	-	1.1e-11	44.8	1.1	3.1e-11	43.3	1.1	1.7	1	1	0	1	1	1	1	Transposase	DDE	domain
DUF772	PF05598.11	gi|345004774|ref|YP_004807627.1|	-	0.00023	21.1	0.1	0.00047	20.1	0.1	1.5	1	0	0	1	1	1	1	Transposase	domain	(DUF772)
DUF2249	PF10006.9	gi|345004775|ref|YP_004807628.1|	-	3.8e-13	49.1	0.6	5.2e-13	48.6	0.6	1.2	1	0	0	1	1	1	1	Uncharacterized	conserved	protein	(DUF2249)
TusA	PF01206.17	gi|345004775|ref|YP_004807628.1|	-	4.4e-05	23.2	0.0	5.3e-05	23.0	0.0	1.1	1	0	0	1	1	1	1	Sulfurtransferase	TusA
DUF4543	PF15076.6	gi|345004775|ref|YP_004807628.1|	-	0.13	12.4	0.4	2.5	8.3	0.4	2.1	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4543)
DUF2249	PF10006.9	gi|345004776|ref|YP_004807629.1|	-	2.6e-24	84.9	0.3	3e-24	84.7	0.3	1.1	1	0	0	1	1	1	1	Uncharacterized	conserved	protein	(DUF2249)
TusA	PF01206.17	gi|345004776|ref|YP_004807629.1|	-	0.065	13.1	0.0	0.091	12.6	0.0	1.2	1	0	0	1	1	1	0	Sulfurtransferase	TusA
DUF2249	PF10006.9	gi|345004777|ref|YP_004807630.1|	-	3.3e-21	74.9	0.1	3.9e-21	74.7	0.1	1.1	1	0	0	1	1	1	1	Uncharacterized	conserved	protein	(DUF2249)
HTH_10	PF04967.12	gi|345004778|ref|YP_004807631.1|	-	2.8e-17	62.3	0.1	6.1e-17	61.2	0.1	1.6	1	0	0	1	1	1	1	HTH	DNA	binding	domain
HTH_IclR	PF09339.10	gi|345004778|ref|YP_004807631.1|	-	0.00037	20.2	1.9	0.0047	16.7	0.2	2.7	3	0	0	3	3	3	1	IclR	helix-turn-helix	domain
BAT	PF15915.5	gi|345004778|ref|YP_004807631.1|	-	0.0019	18.1	1.2	0.0049	16.8	0.0	2.0	2	0	0	2	2	2	1	GAF	and	HTH_10	associated	domain
MarR_2	PF12802.7	gi|345004778|ref|YP_004807631.1|	-	0.033	14.1	0.2	0.093	12.6	0.2	1.8	1	1	0	1	1	1	0	MarR	family
PuR_N	PF09182.10	gi|345004778|ref|YP_004807631.1|	-	0.078	12.9	0.0	0.17	11.9	0.0	1.5	1	0	0	1	1	1	0	Bacterial	purine	repressor,	N-terminal
HTH_35	PF13693.6	gi|345004778|ref|YP_004807631.1|	-	0.092	12.8	0.0	0.2	11.7	0.0	1.6	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
HTH_24	PF13412.6	gi|345004778|ref|YP_004807631.1|	-	0.14	11.8	0.0	0.26	10.9	0.0	1.5	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
MarR	PF01047.22	gi|345004778|ref|YP_004807631.1|	-	0.17	11.9	0.0	0.3	11.0	0.0	1.4	1	0	0	1	1	1	0	MarR	family
Radical_SAM	PF04055.21	gi|345004779|ref|YP_004807632.1|	-	1.4e-18	67.8	0.0	2.2e-18	67.2	0.0	1.2	1	0	0	1	1	1	1	Radical	SAM	superfamily
Fer4_12	PF13353.6	gi|345004779|ref|YP_004807632.1|	-	2.2e-05	24.8	0.0	3.6e-05	24.1	0.0	1.3	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
Fer4_14	PF13394.6	gi|345004779|ref|YP_004807632.1|	-	0.0003	20.9	0.0	0.00075	19.6	0.0	1.7	1	1	1	2	2	2	1	4Fe-4S	single	cluster	domain
SPASM	PF13186.6	gi|345004779|ref|YP_004807632.1|	-	0.022	15.3	0.0	0.041	14.4	0.0	1.4	1	0	0	1	1	1	0	Iron-sulfur	cluster-binding	domain
Copper-bind	PF00127.20	gi|345004780|ref|YP_004807633.1|	-	1.4e-17	63.9	0.2	2.6e-17	63.1	0.2	1.4	1	0	0	1	1	1	1	Copper	binding	proteins,	plastocyanin/azurin	family
Cupredoxin_1	PF13473.6	gi|345004780|ref|YP_004807633.1|	-	7.4e-05	22.8	0.8	0.00068	19.7	0.8	2.1	1	1	0	1	1	1	1	Cupredoxin-like	domain
TAT_signal	PF10518.9	gi|345004780|ref|YP_004807633.1|	-	7.6e-05	22.4	3.3	0.00012	21.8	3.3	1.3	1	0	0	1	1	1	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
nos_propeller_2	PF18793.1	gi|345004781|ref|YP_004807634.1|	-	5.7e-34	116.3	0.1	1.6e-33	114.9	0.1	1.8	1	0	0	1	1	1	1	Nitrous	oxide	reductase	propeller	repeat	2
nos_propeller	PF18764.1	gi|345004781|ref|YP_004807634.1|	-	1.8e-27	95.0	0.4	7.3e-26	89.9	0.1	3.1	3	0	0	3	3	3	1	Nitrous	oxide	reductase	propeller	repeat
COX2	PF00116.20	gi|345004781|ref|YP_004807634.1|	-	7.9e-06	25.8	0.0	2.3e-05	24.2	0.0	1.8	1	0	0	1	1	1	1	Cytochrome	C	oxidase	subunit	II,	periplasmic	domain
Cupredoxin_1	PF13473.6	gi|345004781|ref|YP_004807634.1|	-	1.4e-05	25.2	0.0	2.6e-05	24.3	0.0	1.5	1	0	0	1	1	1	1	Cupredoxin-like	domain
TAT_signal	PF10518.9	gi|345004781|ref|YP_004807634.1|	-	0.00028	20.6	7.5	0.00047	19.9	7.5	1.4	1	0	0	1	1	1	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
Cytomega_TRL10	PF06084.11	gi|345004782|ref|YP_004807635.1|	-	0.19	11.8	0.0	0.3	11.1	0.0	1.3	1	0	0	1	1	1	0	Cytomegalovirus	TRL10	protein
NosD	PF05048.13	gi|345004783|ref|YP_004807636.1|	-	2.1e-52	177.8	12.5	1.5e-50	171.7	7.2	2.3	1	1	1	2	2	2	2	Periplasmic	copper-binding	protein	(NosD)
Beta_helix	PF13229.6	gi|345004783|ref|YP_004807636.1|	-	5.1e-29	101.2	13.7	4.4e-23	81.9	5.6	2.3	1	1	1	2	2	2	2	Right	handed	beta	helix	region
ABC_tran	PF00005.27	gi|345004784|ref|YP_004807637.1|	-	1.8e-30	106.3	0.0	2.4e-30	105.8	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|345004784|ref|YP_004807637.1|	-	5.8e-12	46.0	1.3	2.1e-07	31.1	0.0	2.1	1	1	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
RsgA_GTPase	PF03193.16	gi|345004784|ref|YP_004807637.1|	-	0.037	13.9	0.0	0.061	13.2	0.0	1.3	1	0	0	1	1	1	0	RsgA	GTPase
AAA_16	PF13191.6	gi|345004784|ref|YP_004807637.1|	-	0.044	14.2	0.1	0.069	13.5	0.1	1.5	1	1	0	1	1	1	0	AAA	ATPase	domain
MMR_HSR1	PF01926.23	gi|345004784|ref|YP_004807637.1|	-	0.11	12.6	0.1	0.18	11.9	0.1	1.8	1	1	0	1	1	1	0	50S	ribosome-binding	GTPase
KAP_NTPase	PF07693.14	gi|345004784|ref|YP_004807637.1|	-	0.11	11.7	0.0	0.11	11.7	0.0	1.1	1	0	0	1	1	1	0	KAP	family	P-loop	domain
ABC2_membrane_2	PF12679.7	gi|345004785|ref|YP_004807638.1|	-	2.7e-21	76.1	22.2	5.3e-20	71.9	22.2	2.0	1	1	0	1	1	1	1	ABC-2	family	transporter	protein
ABC2_membrane_5	PF13346.6	gi|345004785|ref|YP_004807638.1|	-	0.24	10.9	3.0	0.32	10.5	2.2	1.6	1	1	0	1	1	1	0	ABC-2	family	transporter	protein
Rab5ip	PF07019.12	gi|345004787|ref|YP_004807640.1|	-	0.1	13.2	2.0	0.1	13.2	2.0	1.1	1	0	0	1	1	1	0	Rab5-interacting	protein	(Rab5ip)
SPC12	PF06645.13	gi|345004787|ref|YP_004807640.1|	-	0.12	12.4	0.6	0.15	12.2	0.6	1.2	1	0	0	1	1	1	0	Microsomal	signal	peptidase	12	kDa	subunit	(SPC12)
COX1	PF00115.20	gi|345004788|ref|YP_004807641.1|	-	4.2e-05	22.6	50.7	0.00028	19.9	9.0	4.8	1	1	5	6	6	6	5	Cytochrome	C	and	Quinol	oxidase	polypeptide	I
Response_reg	PF00072.24	gi|345004789|ref|YP_004807642.1|	-	1.6e-22	79.8	0.0	3.6e-22	78.6	0.0	1.6	1	0	0	1	1	1	1	Response	regulator	receiver	domain
PAS_3	PF08447.12	gi|345004789|ref|YP_004807642.1|	-	1.5e-13	50.8	0.0	4.4e-13	49.3	0.0	1.8	1	0	0	1	1	1	1	PAS	fold
HATPase_c	PF02518.26	gi|345004789|ref|YP_004807642.1|	-	1.7e-13	51.1	0.1	3.9e-13	49.9	0.1	1.6	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
PAS	PF00989.25	gi|345004789|ref|YP_004807642.1|	-	4.7e-10	39.5	0.0	1.2e-09	38.2	0.0	1.7	1	0	0	1	1	1	1	PAS	fold
PAS_4	PF08448.10	gi|345004789|ref|YP_004807642.1|	-	7.8e-10	39.0	0.0	2.8e-09	37.2	0.0	2.0	3	0	0	3	3	2	1	PAS	fold
PAS_9	PF13426.7	gi|345004789|ref|YP_004807642.1|	-	1.2e-07	31.9	0.0	2.6e-07	30.8	0.0	1.6	1	0	0	1	1	1	1	PAS	domain
OKR_DC_1_N	PF03709.15	gi|345004789|ref|YP_004807642.1|	-	0.00013	22.2	0.0	0.00036	20.8	0.0	1.8	2	0	0	2	2	2	1	Orn/Lys/Arg	decarboxylase,	N-terminal	domain
HisKA	PF00512.25	gi|345004789|ref|YP_004807642.1|	-	0.051	13.6	0.1	0.21	11.7	0.1	2.2	1	1	0	1	1	1	0	His	Kinase	A	(phospho-acceptor)	domain
FleQ	PF06490.11	gi|345004789|ref|YP_004807642.1|	-	0.063	13.7	0.0	0.17	12.3	0.0	1.7	2	0	0	2	2	1	0	Flagellar	regulatory	protein	FleQ
DUF5039	PF16442.5	gi|345004789|ref|YP_004807642.1|	-	0.07	12.7	0.0	0.13	11.8	0.0	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF5039)
HATPase_c_3	PF13589.6	gi|345004789|ref|YP_004807642.1|	-	0.077	12.8	0.0	0.17	11.7	0.0	1.5	1	0	0	1	1	1	0	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
DUF4402	PF14352.6	gi|345004789|ref|YP_004807642.1|	-	0.088	13.5	0.1	2.3	8.9	0.0	2.3	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4402)
Zn-ribbon_8	PF09723.10	gi|345004792|ref|YP_004807645.1|	-	0.0036	17.4	1.5	0.077	13.1	0.1	2.2	2	0	0	2	2	2	1	Zinc	ribbon	domain
DZR	PF12773.7	gi|345004792|ref|YP_004807645.1|	-	0.026	14.5	0.4	0.047	13.7	0.4	1.4	1	1	0	1	1	1	0	Double	zinc	ribbon
Zn_Tnp_IS1595	PF12760.7	gi|345004792|ref|YP_004807645.1|	-	0.038	14.0	0.6	0.069	13.1	0.6	1.4	1	1	0	1	1	1	0	Transposase	zinc-ribbon	domain
OrfB_Zn_ribbon	PF07282.11	gi|345004792|ref|YP_004807645.1|	-	0.054	13.4	0.5	0.078	12.9	0.5	1.4	1	1	0	1	1	1	0	Putative	transposase	DNA-binding	domain
DiS_P_DiS	PF06750.13	gi|345004792|ref|YP_004807645.1|	-	0.059	13.5	0.0	0.062	13.4	0.0	1.2	1	0	0	1	1	1	0	Bacterial	Peptidase	A24	N-terminal	domain
zf-C4_Topoisom	PF01396.19	gi|345004792|ref|YP_004807645.1|	-	0.16	11.7	0.1	0.16	11.7	0.1	1.9	2	0	0	2	2	2	0	Topoisomerase	DNA	binding	C4	zinc	finger
DNA_ligase_ZBD	PF03119.16	gi|345004792|ref|YP_004807645.1|	-	0.18	11.9	2.4	0.2	11.7	0.5	2.0	2	0	0	2	2	2	0	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
tRNA_anti-codon	PF01336.25	gi|345004794|ref|YP_004807647.1|	-	9.5e-09	35.1	0.0	2.6e-08	33.8	0.0	1.7	1	0	0	1	1	1	1	OB-fold	nucleic	acid	binding	domain
S1	PF00575.23	gi|345004794|ref|YP_004807647.1|	-	4e-06	27.1	0.0	1.2e-05	25.5	0.0	1.8	1	0	0	1	1	1	1	S1	RNA	binding	domain
tRNA_anti_2	PF13742.6	gi|345004794|ref|YP_004807647.1|	-	0.064	13.5	0.0	0.21	11.8	0.0	1.9	1	0	0	1	1	1	0	OB-fold	nucleic	acid	binding	domain
NESP55	PF06390.12	gi|345004794|ref|YP_004807647.1|	-	6.3	6.3	25.8	1	8.9	20.8	2.2	2	0	0	2	2	2	0	Neuroendocrine-specific	golgi	protein	P55	(NESP55)
Yip1	PF04893.17	gi|345004796|ref|YP_004807649.1|	-	2.6e-11	43.5	11.0	3.3e-11	43.2	11.0	1.1	1	0	0	1	1	1	1	Yip1	domain
TK	PF00265.18	gi|345004797|ref|YP_004807650.1|	-	3.3e-48	163.9	0.0	3.7e-48	163.7	0.0	1.0	1	0	0	1	1	1	1	Thymidine	kinase
AAA_30	PF13604.6	gi|345004797|ref|YP_004807650.1|	-	0.01	15.6	0.2	0.019	14.7	0.2	1.4	1	1	0	1	1	1	0	AAA	domain
zf-C4_ClpX	PF06689.13	gi|345004797|ref|YP_004807650.1|	-	0.053	13.4	0.0	0.16	11.9	0.0	1.8	1	0	0	1	1	1	0	ClpX	C4-type	zinc	finger
zf-dskA_traR	PF01258.17	gi|345004797|ref|YP_004807650.1|	-	0.11	12.4	1.9	2.9	7.9	0.0	3.0	3	0	0	3	3	3	0	Prokaryotic	dksA/traR	C4-type	zinc	finger
AA_kinase	PF00696.28	gi|345004798|ref|YP_004807651.1|	-	9.4e-35	120.3	5.4	1.2e-34	120.0	5.4	1.0	1	0	0	1	1	1	1	Amino	acid	kinase	family
GHMP_kinases_N	PF00288.26	gi|345004799|ref|YP_004807652.1|	-	2.1e-14	53.5	0.7	5.2e-14	52.2	0.7	1.7	1	0	0	1	1	1	1	GHMP	kinases	N	terminal	domain
GHMP_kinases_C	PF08544.13	gi|345004799|ref|YP_004807652.1|	-	8.4e-11	42.1	1.5	8.4e-11	42.1	1.5	2.0	2	0	0	2	2	2	1	GHMP	kinases	C	terminal
GalKase_gal_bdg	PF10509.9	gi|345004799|ref|YP_004807652.1|	-	0.00026	20.5	0.0	0.00063	19.2	0.0	1.7	1	0	0	1	1	1	1	Galactokinase	galactose-binding	signature
Ribosomal_S2	PF00318.20	gi|345004800|ref|YP_004807653.1|	-	7.9e-24	84.1	0.1	1.8e-14	53.5	0.3	2.2	1	1	1	2	2	2	2	Ribosomal	protein	S2
Enolase_C	PF00113.22	gi|345004801|ref|YP_004807654.1|	-	1.3e-65	221.6	2.0	1.4e-64	218.2	2.0	2.0	1	1	0	1	1	1	1	Enolase,	C-terminal	TIM	barrel	domain
Enolase_N	PF03952.16	gi|345004801|ref|YP_004807654.1|	-	1.2e-34	119.3	0.3	3.5e-34	117.8	0.3	1.8	1	1	0	1	1	1	1	Enolase,	N-terminal	domain
MR_MLE_C	PF13378.6	gi|345004801|ref|YP_004807654.1|	-	2.2e-08	33.9	0.7	6.8e-08	32.3	0.7	1.8	1	1	0	1	1	1	1	Enolase	C-terminal	domain-like
MAAL_C	PF07476.11	gi|345004801|ref|YP_004807654.1|	-	0.0089	15.2	1.3	0.013	14.6	0.1	1.8	2	0	0	2	2	2	1	Methylaspartate	ammonia-lyase	C-terminus
rOmpB	PF12334.8	gi|345004801|ref|YP_004807654.1|	-	0.048	13.1	0.0	0.1	12.1	0.0	1.5	1	0	0	1	1	1	0	Rickettsia	outer	membrane	protein	B
RNA_pol_Rpb6	PF01192.22	gi|345004802|ref|YP_004807655.1|	-	2.6e-11	43.3	0.0	2.8e-11	43.2	0.0	1.1	1	0	0	1	1	1	1	RNA	polymerase	Rpb6
RNA_pol_N	PF01194.17	gi|345004803|ref|YP_004807656.1|	-	1.8e-28	98.6	0.2	1.9e-28	98.5	0.2	1.0	1	0	0	1	1	1	1	RNA	polymerases	N	/	8	kDa	subunit
DUF2655	PF10848.8	gi|345004803|ref|YP_004807656.1|	-	0.017	15.4	0.2	0.08	13.3	0.2	1.8	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF2655)
Ribosomal_S9	PF00380.19	gi|345004804|ref|YP_004807657.1|	-	1.3e-31	109.6	0.0	1.5e-31	109.4	0.0	1.0	1	0	0	1	1	1	1	Ribosomal	protein	S9/S16
Ribosomal_L13	PF00572.18	gi|345004805|ref|YP_004807658.1|	-	6.5e-12	45.8	0.1	3.7e-10	40.1	0.1	2.3	1	1	0	1	1	1	1	Ribosomal	protein	L13
Ribosomal_L18	PF17135.4	gi|345004806|ref|YP_004807659.1|	-	2.7e-08	33.4	0.0	2.8e-08	33.4	0.0	1.0	1	0	0	1	1	1	1	Ribosomal	protein	60S	L18	and	50S	L18e
Ribosomal_L27A	PF00828.19	gi|345004806|ref|YP_004807659.1|	-	1.3e-06	29.1	0.6	3.2e-06	27.8	0.6	1.7	1	1	0	1	1	1	1	Ribosomal	proteins	50S-L15,	50S-L18e,	60S-L27A
RNA_pol_A_bac	PF01000.26	gi|345004807|ref|YP_004807660.1|	-	2.9e-17	63.1	0.0	5.3e-16	59.0	0.0	2.5	2	1	0	2	2	2	1	RNA	polymerase	Rpb3/RpoA	insert	domain
RNA_pol_L	PF01193.24	gi|345004807|ref|YP_004807660.1|	-	1.7e-13	49.8	0.0	4.2e-13	48.5	0.0	1.6	1	1	0	1	1	1	1	RNA	polymerase	Rpb3/Rpb11	dimerisation	domain
Ribosomal_S11	PF00411.19	gi|345004808|ref|YP_004807661.1|	-	1.7e-47	160.3	2.4	2.3e-47	159.9	2.4	1.2	1	0	0	1	1	1	1	Ribosomal	protein	S11
S4	PF01479.25	gi|345004809|ref|YP_004807662.1|	-	3.6e-13	49.0	0.2	1.7e-12	46.8	0.0	2.0	2	0	0	2	2	2	1	S4	domain
Ribosomal_S4	PF00163.19	gi|345004809|ref|YP_004807662.1|	-	0.017	16.0	0.1	0.021	15.7	0.1	1.3	1	1	0	1	1	1	0	Ribosomal	protein	S4/S9	N-terminal	domain
Ribosomal_S13	PF00416.22	gi|345004810|ref|YP_004807663.1|	-	2.9e-44	150.6	3.0	4e-44	150.1	3.0	1.2	1	0	0	1	1	1	1	Ribosomal	protein	S13/S18
FbpA	PF05833.11	gi|345004810|ref|YP_004807663.1|	-	0.037	12.8	1.1	0.044	12.5	0.0	1.7	2	0	0	2	2	2	0	Fibronectin-binding	protein	A	N-terminus	(FbpA)
Pox_EPC_I2-L1	PF12575.8	gi|345004810|ref|YP_004807663.1|	-	0.15	12.3	0.4	18	5.6	0.3	2.4	2	0	0	2	2	2	0	Poxvirus	entry	protein	complex	L1	and	I2
BKACE	PF05853.12	gi|345004811|ref|YP_004807664.1|	-	5e-85	285.1	0.1	5.7e-85	284.9	0.1	1.0	1	0	0	1	1	1	1	beta-keto	acid	cleavage	enzyme
Radical_SAM	PF04055.21	gi|345004813|ref|YP_004807666.1|	-	7.7e-25	88.2	0.1	1.8e-24	87.0	0.0	1.6	2	0	0	2	2	2	1	Radical	SAM	superfamily
Mob_synth_C	PF06463.13	gi|345004813|ref|YP_004807666.1|	-	2.7e-15	56.4	0.0	5.7e-15	55.4	0.0	1.6	1	0	0	1	1	1	1	Molybdenum	Cofactor	Synthesis	C
Fer4_12	PF13353.6	gi|345004813|ref|YP_004807666.1|	-	3e-07	30.8	0.0	6.4e-07	29.7	0.0	1.5	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
Fer4_14	PF13394.6	gi|345004813|ref|YP_004807666.1|	-	1.2e-05	25.5	0.0	3.9e-05	23.8	0.0	1.8	2	0	0	2	2	2	1	4Fe-4S	single	cluster	domain
Imm75	PF15660.6	gi|345004813|ref|YP_004807666.1|	-	0.0073	16.5	0.0	0.015	15.6	0.0	1.5	1	0	0	1	1	1	1	Putative	Immunity	protein	75
zinc_ribbon_2	PF13240.6	gi|345004813|ref|YP_004807666.1|	-	0.15	11.8	0.4	0.15	11.8	0.4	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
ParA	PF10609.9	gi|345004814|ref|YP_004807667.1|	-	9.2e-98	326.6	0.0	1.2e-97	326.2	0.0	1.1	1	0	0	1	1	1	1	NUBPL	iron-transfer	P-loop	NTPase
CbiA	PF01656.23	gi|345004814|ref|YP_004807667.1|	-	9.7e-15	54.8	0.0	1.4e-12	47.8	0.0	2.2	2	0	0	2	2	2	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
FeS_assembly_P	PF01883.19	gi|345004814|ref|YP_004807667.1|	-	1.3e-12	47.7	0.4	2.9e-12	46.6	0.2	1.6	2	0	0	2	2	2	1	Iron-sulfur	cluster	assembly	protein
AAA_31	PF13614.6	gi|345004814|ref|YP_004807667.1|	-	2.5e-10	40.6	0.5	3.6e-08	33.5	0.4	2.1	1	1	0	2	2	2	1	AAA	domain
MipZ	PF09140.11	gi|345004814|ref|YP_004807667.1|	-	1.2e-06	28.0	0.0	1.8e-06	27.4	0.0	1.3	1	0	0	1	1	1	1	ATPase	MipZ
ArsA_ATPase	PF02374.15	gi|345004814|ref|YP_004807667.1|	-	3.8e-05	23.0	2.7	0.00026	20.3	1.0	2.1	2	0	0	2	2	2	1	Anion-transporting	ATPase
Fer4_NifH	PF00142.18	gi|345004814|ref|YP_004807667.1|	-	0.001	18.6	0.0	0.0047	16.4	0.1	1.8	2	0	0	2	2	2	1	4Fe-4S	iron	sulfur	cluster	binding	proteins,	NifH/frxC	family
VirC1	PF07015.11	gi|345004814|ref|YP_004807667.1|	-	0.0011	18.3	0.0	0.0018	17.6	0.0	1.2	1	0	0	1	1	1	1	VirC1	protein
CLP1_P	PF16575.5	gi|345004814|ref|YP_004807667.1|	-	0.017	14.9	0.0	0.023	14.5	0.0	1.2	1	0	0	1	1	1	0	mRNA	cleavage	and	polyadenylation	factor	CLP1	P-loop
AAA_25	PF13481.6	gi|345004814|ref|YP_004807667.1|	-	0.075	12.6	0.0	0.15	11.6	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
RsgA_GTPase	PF03193.16	gi|345004814|ref|YP_004807667.1|	-	0.082	12.8	0.0	0.12	12.2	0.0	1.3	1	0	0	1	1	1	0	RsgA	GTPase
NB-ARC	PF00931.22	gi|345004814|ref|YP_004807667.1|	-	0.084	12.0	0.2	0.14	11.4	0.2	1.2	1	0	0	1	1	1	0	NB-ARC	domain
DUF1610	PF07754.11	gi|345004814|ref|YP_004807667.1|	-	0.11	12.5	0.3	0.37	10.8	0.1	2.0	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF1610)
APS_kinase	PF01583.20	gi|345004814|ref|YP_004807667.1|	-	0.19	11.6	0.0	0.37	10.7	0.0	1.4	1	0	0	1	1	1	0	Adenylylsulphate	kinase
UDG	PF03167.19	gi|345004816|ref|YP_004807669.1|	-	6.8e-26	91.1	0.0	1.1e-25	90.4	0.0	1.4	1	0	0	1	1	1	1	Uracil	DNA	glycosylase	superfamily
DUF3499	PF12005.8	gi|345004816|ref|YP_004807669.1|	-	0.022	15.4	0.0	0.045	14.3	0.0	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3499)
DUF2064	PF09837.9	gi|345004818|ref|YP_004807671.1|	-	3.5e-06	26.9	0.0	6.8e-06	25.9	0.0	1.4	1	0	0	1	1	1	1	Uncharacterized	protein	conserved	in	bacteria	(DUF2064)
CofC	PF01983.16	gi|345004818|ref|YP_004807671.1|	-	0.0035	16.6	0.0	0.86	8.7	0.1	2.1	2	0	0	2	2	2	2	Guanylyl	transferase	CofC	like
CTP_transf_3	PF02348.19	gi|345004818|ref|YP_004807671.1|	-	0.056	13.3	0.0	0.071	13.0	0.0	1.2	1	0	0	1	1	1	0	Cytidylyltransferase
CMAS	PF02353.20	gi|345004819|ref|YP_004807672.1|	-	0.073	12.4	0.2	0.074	12.3	0.2	1.0	1	0	0	1	1	1	0	Mycolic	acid	cyclopropane	synthetase
PRK	PF00485.18	gi|345004820|ref|YP_004807673.1|	-	2.1e-47	161.4	0.0	2.9e-47	161.0	0.0	1.2	1	0	0	1	1	1	1	Phosphoribulokinase	/	Uridine	kinase	family
dNK	PF01712.19	gi|345004820|ref|YP_004807673.1|	-	1.8e-05	24.7	0.3	8.9e-05	22.4	0.3	1.9	1	1	0	1	1	1	1	Deoxynucleoside	kinase
CoaE	PF01121.20	gi|345004820|ref|YP_004807673.1|	-	0.00016	21.4	0.1	0.016	14.9	0.0	2.2	2	0	0	2	2	2	1	Dephospho-CoA	kinase
Zeta_toxin	PF06414.12	gi|345004820|ref|YP_004807673.1|	-	0.00038	19.8	0.0	0.00069	18.9	0.0	1.4	1	0	0	1	1	1	1	Zeta	toxin
AAA_18	PF13238.6	gi|345004820|ref|YP_004807673.1|	-	0.00061	20.3	1.0	0.0017	18.9	0.8	1.9	1	1	0	1	1	1	1	AAA	domain
ABC_tran	PF00005.27	gi|345004820|ref|YP_004807673.1|	-	0.0016	19.0	0.0	0.0022	18.5	0.0	1.4	1	1	0	1	1	1	1	ABC	transporter
AAA_17	PF13207.6	gi|345004820|ref|YP_004807673.1|	-	0.0019	18.6	0.4	1.9	8.9	0.0	2.4	2	0	0	2	2	2	2	AAA	domain
AAA_33	PF13671.6	gi|345004820|ref|YP_004807673.1|	-	0.0079	16.4	0.0	0.015	15.5	0.0	1.5	1	0	0	1	1	1	1	AAA	domain
T3SS_needle_reg	PF09025.10	gi|345004820|ref|YP_004807673.1|	-	0.018	15.0	0.1	0.026	14.5	0.1	1.2	1	0	0	1	1	1	0	YopR,	type	III	needle-polymerisation	regulator
HTH_15	PF12324.8	gi|345004820|ref|YP_004807673.1|	-	0.064	13.2	0.0	2.2	8.3	0.0	2.5	2	0	0	2	2	2	0	Helix-turn-helix	domain	of	alkylmercury	lyase
AAA_26	PF13500.6	gi|345004820|ref|YP_004807673.1|	-	0.086	12.7	1.2	12	5.7	0.3	2.8	1	1	1	2	2	2	0	AAA	domain
AAA_22	PF13401.6	gi|345004820|ref|YP_004807673.1|	-	0.11	12.8	0.1	0.17	12.2	0.1	1.7	1	1	0	1	1	1	0	AAA	domain
T2SSE	PF00437.20	gi|345004820|ref|YP_004807673.1|	-	0.29	10.2	2.1	0.33	10.0	0.3	1.8	2	0	0	2	2	2	0	Type	II/IV	secretion	system	protein
DUF87	PF01935.17	gi|345004820|ref|YP_004807673.1|	-	0.5	10.4	2.4	3.1	7.8	1.0	2.2	1	1	1	2	2	2	0	Helicase	HerA,	central	domain
Peripla_BP_6	PF13458.6	gi|345004821|ref|YP_004807674.1|	-	1e-33	117.5	3.4	1.4e-33	117.0	3.4	1.1	1	0	0	1	1	1	1	Periplasmic	binding	protein
ANF_receptor	PF01094.28	gi|345004821|ref|YP_004807674.1|	-	4.4e-26	91.8	0.0	5.8e-26	91.4	0.0	1.0	1	0	0	1	1	1	1	Receptor	family	ligand	binding	region
LppC	PF04348.13	gi|345004821|ref|YP_004807674.1|	-	7.9e-05	21.6	0.1	0.00019	20.4	0.1	1.5	1	1	0	1	1	1	1	LppC	putative	lipoprotein
Peripla_BP_5	PF13433.6	gi|345004821|ref|YP_004807674.1|	-	0.039	12.9	0.0	6.6	5.6	0.0	2.2	2	0	0	2	2	2	0	Periplasmic	binding	protein	domain
PAC2	PF09754.9	gi|345004822|ref|YP_004807675.1|	-	7e-41	140.6	0.1	8e-41	140.4	0.1	1.0	1	0	0	1	1	1	1	PAC2	family
Aminotran_1_2	PF00155.21	gi|345004824|ref|YP_004807677.1|	-	1.6e-60	205.2	0.0	1.9e-60	205.0	0.0	1.0	1	0	0	1	1	1	1	Aminotransferase	class	I	and	II
DegT_DnrJ_EryC1	PF01041.17	gi|345004824|ref|YP_004807677.1|	-	2.3e-15	56.8	0.0	3.7e-15	56.1	0.0	1.2	1	0	0	1	1	1	1	DegT/DnrJ/EryC1/StrS	aminotransferase	family
Beta_elim_lyase	PF01212.21	gi|345004824|ref|YP_004807677.1|	-	2.2e-06	27.2	0.0	4.7e-06	26.1	0.0	1.4	2	0	0	2	2	2	1	Beta-eliminating	lyase
Cys_Met_Meta_PP	PF01053.20	gi|345004824|ref|YP_004807677.1|	-	5.7e-06	25.1	0.0	8.6e-06	24.5	0.0	1.1	1	0	0	1	1	1	1	Cys/Met	metabolism	PLP-dependent	enzyme
Aminotran_5	PF00266.19	gi|345004824|ref|YP_004807677.1|	-	4.8e-05	22.5	0.0	7.6e-05	21.8	0.0	1.2	1	0	0	1	1	1	1	Aminotransferase	class-V
Aminotran_3	PF00202.21	gi|345004824|ref|YP_004807677.1|	-	0.042	12.5	0.1	0.089	11.4	0.0	1.4	2	0	0	2	2	2	0	Aminotransferase	class-III
NMT1_2	PF13379.6	gi|345004825|ref|YP_004807678.1|	-	9.5e-32	110.7	0.0	1.3e-31	110.2	0.0	1.1	1	0	0	1	1	1	1	NMT1-like	family
Phosphonate-bd	PF12974.7	gi|345004825|ref|YP_004807678.1|	-	9.9e-05	22.0	0.0	0.00024	20.8	0.0	1.5	1	1	0	1	1	1	1	ABC	transporter,	phosphonate,	periplasmic	substrate-binding	protein
TAT_signal	PF10518.9	gi|345004825|ref|YP_004807678.1|	-	0.00016	21.4	2.3	0.00034	20.3	2.3	1.6	1	0	0	1	1	1	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
BPD_transp_1	PF00528.22	gi|345004826|ref|YP_004807679.1|	-	1.4e-17	64.0	13.8	1.4e-17	64.0	13.8	1.8	1	1	1	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
Romo1	PF10247.9	gi|345004826|ref|YP_004807679.1|	-	0.012	16.0	0.5	0.039	14.3	0.0	2.1	2	1	0	2	2	2	0	Reactive	mitochondrial	oxygen	species	modulator	1
ABC_tran	PF00005.27	gi|345004827|ref|YP_004807680.1|	-	8.4e-31	107.3	0.0	1.2e-30	106.8	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|345004827|ref|YP_004807680.1|	-	3.4e-06	27.1	0.0	0.00096	19.0	0.0	2.1	1	1	0	2	2	2	1	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_23	PF13476.6	gi|345004827|ref|YP_004807680.1|	-	0.00016	22.3	0.0	0.0002	22.0	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
RsgA_GTPase	PF03193.16	gi|345004827|ref|YP_004807680.1|	-	0.00051	20.0	0.0	0.00082	19.3	0.0	1.3	1	0	0	1	1	1	1	RsgA	GTPase
AAA	PF00004.29	gi|345004827|ref|YP_004807680.1|	-	0.0022	18.4	0.2	0.0065	16.9	0.2	2.0	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_28	PF13521.6	gi|345004827|ref|YP_004807680.1|	-	0.0032	17.7	0.4	0.031	14.5	0.3	2.1	2	0	0	2	2	2	1	AAA	domain
AAA_22	PF13401.6	gi|345004827|ref|YP_004807680.1|	-	0.0044	17.3	0.0	0.0084	16.4	0.0	1.6	1	0	0	1	1	1	1	AAA	domain
AAA_16	PF13191.6	gi|345004827|ref|YP_004807680.1|	-	0.0048	17.3	0.1	0.0066	16.8	0.1	1.5	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_30	PF13604.6	gi|345004827|ref|YP_004807680.1|	-	0.011	15.5	0.2	0.039	13.7	0.1	1.9	2	0	0	2	2	2	0	AAA	domain
SMC_N	PF02463.19	gi|345004827|ref|YP_004807680.1|	-	0.011	15.2	0.0	0.87	9.0	0.0	2.1	2	0	0	2	2	2	0	RecF/RecN/SMC	N	terminal	domain
Rad17	PF03215.15	gi|345004827|ref|YP_004807680.1|	-	0.016	15.1	0.0	0.024	14.6	0.0	1.2	1	0	0	1	1	1	0	Rad17	P-loop	domain
IstB_IS21	PF01695.17	gi|345004827|ref|YP_004807680.1|	-	0.026	14.3	0.0	0.05	13.3	0.0	1.4	1	0	0	1	1	1	0	IstB-like	ATP	binding	protein
NB-ARC	PF00931.22	gi|345004827|ref|YP_004807680.1|	-	0.026	13.7	0.1	0.051	12.8	0.0	1.4	2	0	0	2	2	2	0	NB-ARC	domain
NACHT	PF05729.12	gi|345004827|ref|YP_004807680.1|	-	0.03	14.2	0.1	0.056	13.3	0.1	1.4	1	0	0	1	1	1	0	NACHT	domain
AAA_5	PF07728.14	gi|345004827|ref|YP_004807680.1|	-	0.031	14.3	0.0	0.057	13.4	0.0	1.4	1	0	0	1	1	1	0	AAA	domain	(dynein-related	subfamily)
ATPase_2	PF01637.18	gi|345004827|ref|YP_004807680.1|	-	0.04	13.8	0.0	0.077	12.9	0.0	1.4	1	0	0	1	1	1	0	ATPase	domain	predominantly	from	Archaea
MMR_HSR1	PF01926.23	gi|345004827|ref|YP_004807680.1|	-	0.045	13.8	0.1	0.097	12.8	0.0	1.9	1	1	0	1	1	1	0	50S	ribosome-binding	GTPase
AAA_29	PF13555.6	gi|345004827|ref|YP_004807680.1|	-	0.045	13.5	0.0	0.11	12.2	0.0	1.6	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
AAA_18	PF13238.6	gi|345004827|ref|YP_004807680.1|	-	0.058	13.9	0.2	0.12	13.0	0.2	1.5	1	0	0	1	1	1	0	AAA	domain
PduV-EutP	PF10662.9	gi|345004827|ref|YP_004807680.1|	-	0.073	12.8	0.0	0.18	11.5	0.1	1.6	2	0	0	2	2	1	0	Ethanolamine	utilisation	-	propanediol	utilisation
SRPRB	PF09439.10	gi|345004827|ref|YP_004807680.1|	-	0.098	12.1	0.1	0.3	10.5	0.0	1.7	2	0	0	2	2	2	0	Signal	recognition	particle	receptor	beta	subunit
AAA_25	PF13481.6	gi|345004827|ref|YP_004807680.1|	-	0.098	12.2	0.1	0.6	9.6	0.0	2.0	2	0	0	2	2	2	0	AAA	domain
AAA_33	PF13671.6	gi|345004827|ref|YP_004807680.1|	-	0.11	12.7	0.1	0.33	11.1	0.1	1.7	2	0	0	2	2	2	0	AAA	domain
ATP-synt_ab	PF00006.25	gi|345004827|ref|YP_004807680.1|	-	0.11	12.1	0.5	0.13	11.9	0.5	1.4	1	1	0	1	1	1	0	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
TsaE	PF02367.17	gi|345004827|ref|YP_004807680.1|	-	0.15	12.1	0.0	0.3	11.1	0.0	1.5	1	0	0	1	1	1	0	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
RNA_helicase	PF00910.22	gi|345004827|ref|YP_004807680.1|	-	0.15	12.4	0.1	0.29	11.5	0.1	1.5	1	0	0	1	1	1	0	RNA	helicase
AAA_14	PF13173.6	gi|345004827|ref|YP_004807680.1|	-	0.17	11.9	0.1	0.36	10.8	0.1	1.6	1	0	0	1	1	1	0	AAA	domain
AAA_24	PF13479.6	gi|345004827|ref|YP_004807680.1|	-	0.2	11.4	0.3	0.46	10.2	0.1	1.7	2	0	0	2	2	1	0	AAA	domain
ResIII	PF04851.15	gi|345004829|ref|YP_004807682.1|	-	4.5e-26	91.9	0.0	5.5e-25	88.3	0.0	2.1	2	0	0	2	2	2	1	Type	III	restriction	enzyme,	res	subunit
ERCC3_RAD25_C	PF16203.5	gi|345004829|ref|YP_004807682.1|	-	1.4e-19	70.3	0.1	2e-19	69.8	0.1	1.2	1	0	0	1	1	1	1	ERCC3/RAD25/XPB	C-terminal	helicase
XPB_DRD	PF18458.1	gi|345004829|ref|YP_004807682.1|	-	3.5e-18	65.2	1.1	3.1e-17	62.2	1.7	2.3	2	0	0	2	2	2	1	Xeroderma	pigmentosum	group	B	helicase	damage	recognition	domain
Helicase_C	PF00271.31	gi|345004829|ref|YP_004807682.1|	-	6.2e-14	52.3	0.0	2.9e-13	50.1	0.0	2.1	2	0	0	2	2	2	1	Helicase	conserved	C-terminal	domain
DEAD	PF00270.29	gi|345004829|ref|YP_004807682.1|	-	8.1e-08	32.2	0.0	6.2e-07	29.4	0.0	2.2	1	1	0	1	1	1	1	DEAD/DEAH	box	helicase
Helicase_C_2	PF13307.6	gi|345004829|ref|YP_004807682.1|	-	0.035	14.3	0.0	4.9	7.3	0.0	2.5	2	0	0	2	2	2	0	Helicase	C-terminal	domain
DUF790	PF05626.11	gi|345004831|ref|YP_004807684.1|	-	1.9e-136	454.9	0.0	2.9e-136	454.2	0.0	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF790)
Methyltranf_PUA	PF13636.6	gi|345004832|ref|YP_004807685.1|	-	0.0011	18.8	0.0	0.0019	18.2	0.0	1.4	1	0	0	1	1	1	1	RNA-binding	PUA-like	domain	of	methyltransferase	RsmF
Methyltr_RsmB-F	PF01189.17	gi|345004833|ref|YP_004807686.1|	-	1.8e-49	168.1	0.0	2.3e-49	167.8	0.0	1.1	1	0	0	1	1	1	1	16S	rRNA	methyltransferase	RsmB/F
Methyltr_RsmF_N	PF17125.5	gi|345004833|ref|YP_004807686.1|	-	3e-07	30.8	0.0	1.1e-06	29.1	0.0	1.8	2	0	0	2	2	2	1	N-terminal	domain	of	16S	rRNA	methyltransferase	RsmF
Methyltransf_31	PF13847.6	gi|345004833|ref|YP_004807686.1|	-	8e-07	29.0	0.0	1.2e-06	28.4	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
FtsJ	PF01728.19	gi|345004833|ref|YP_004807686.1|	-	0.0026	17.9	0.0	0.0043	17.2	0.0	1.3	1	0	0	1	1	1	1	FtsJ-like	methyltransferase
Methyltransf_25	PF13649.6	gi|345004833|ref|YP_004807686.1|	-	0.015	16.0	0.3	0.052	14.3	0.3	2.0	1	1	0	1	1	1	0	Methyltransferase	domain
Acetyltransf_1	PF00583.25	gi|345004834|ref|YP_004807687.1|	-	6.8e-09	36.0	0.0	1.2e-08	35.1	0.0	1.4	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_CG	PF14542.6	gi|345004834|ref|YP_004807687.1|	-	6.1e-05	23.1	0.1	0.00011	22.3	0.1	1.4	1	0	0	1	1	1	1	GCN5-related	N-acetyl-transferase
Acetyltransf_7	PF13508.7	gi|345004834|ref|YP_004807687.1|	-	0.001	19.4	0.1	0.0018	18.6	0.1	1.4	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_10	PF13673.7	gi|345004834|ref|YP_004807687.1|	-	0.0017	18.3	0.0	0.0026	17.7	0.0	1.3	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_3	PF13302.7	gi|345004834|ref|YP_004807687.1|	-	0.013	16.2	0.1	0.018	15.7	0.1	1.2	1	0	0	1	1	1	0	Acetyltransferase	(GNAT)	domain
Redoxin	PF08534.10	gi|345004834|ref|YP_004807687.1|	-	0.18	11.5	0.2	21	4.8	0.0	2.6	2	1	1	3	3	3	0	Redoxin
dCMP_cyt_deam_1	PF00383.23	gi|345004835|ref|YP_004807688.1|	-	7.1e-16	57.9	0.3	9e-16	57.6	0.3	1.1	1	0	0	1	1	1	1	Cytidine	and	deoxycytidylate	deaminase	zinc-binding	region
dCMP_cyt_deam_2	PF08211.12	gi|345004835|ref|YP_004807688.1|	-	5.3e-10	39.6	1.5	7.7e-10	39.1	1.5	1.3	1	0	0	1	1	1	1	Cytidine	and	deoxycytidylate	deaminase	zinc-binding	region
Cupin_2	PF07883.11	gi|345004836|ref|YP_004807689.1|	-	9.9e-17	60.4	0.5	1.8e-16	59.6	0.2	1.6	2	0	0	2	2	2	1	Cupin	domain
CENP-C_C	PF11699.8	gi|345004836|ref|YP_004807689.1|	-	0.0002	21.5	0.0	0.00029	21.0	0.0	1.2	1	0	0	1	1	1	1	Mif2/CENP-C	like
AraC_binding	PF02311.19	gi|345004836|ref|YP_004807689.1|	-	0.0012	18.8	0.0	0.0019	18.1	0.0	1.4	1	0	0	1	1	1	1	AraC-like	ligand	binding	domain
zf-RRN7	PF11781.8	gi|345004836|ref|YP_004807689.1|	-	0.0021	17.7	3.9	0.013	15.1	0.7	2.3	1	1	1	2	2	2	1	Zinc-finger	of	RNA-polymerase	I-specific	TFIIB,	Rrn7
Lar_restr_allev	PF14354.6	gi|345004836|ref|YP_004807689.1|	-	0.0027	18.0	1.1	0.0027	18.0	1.1	1.7	2	0	0	2	2	1	1	Restriction	alleviation	protein	Lar
Cupin_1	PF00190.22	gi|345004836|ref|YP_004807689.1|	-	0.0069	16.0	0.0	0.013	15.1	0.0	1.4	1	0	0	1	1	1	1	Cupin
Cupin_3	PF05899.12	gi|345004836|ref|YP_004807689.1|	-	0.013	15.2	0.0	0.025	14.3	0.0	1.6	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF861)
DMSP_lyase	PF16867.5	gi|345004836|ref|YP_004807689.1|	-	0.023	14.3	0.1	0.035	13.8	0.1	1.2	1	0	0	1	1	1	0	Dimethlysulfonioproprionate	lyase
MannoseP_isomer	PF01050.18	gi|345004836|ref|YP_004807689.1|	-	0.029	14.3	0.0	0.038	13.9	0.0	1.2	1	0	0	1	1	1	0	Mannose-6-phosphate	isomerase
AraC_binding_2	PF14525.6	gi|345004836|ref|YP_004807689.1|	-	0.03	14.0	0.0	0.038	13.7	0.0	1.3	1	0	0	1	1	1	0	AraC-binding-like	domain
Zn-ribbon_8	PF09723.10	gi|345004836|ref|YP_004807689.1|	-	0.036	14.2	1.6	2.2	8.5	0.2	2.3	2	0	0	2	2	2	0	Zinc	ribbon	domain
FdtA	PF05523.11	gi|345004836|ref|YP_004807689.1|	-	0.056	13.2	0.0	0.095	12.4	0.0	1.3	1	1	0	1	1	1	0	WxcM-like,	C-terminal
Nudix_N_2	PF14803.6	gi|345004836|ref|YP_004807689.1|	-	0.067	13.1	1.0	0.77	9.7	0.9	2.6	2	1	0	2	2	2	0	Nudix	N-terminal
TF_Zn_Ribbon	PF08271.12	gi|345004836|ref|YP_004807689.1|	-	0.14	11.7	4.0	0.32	10.5	4.0	1.6	1	0	0	1	1	1	0	TFIIB	zinc-binding
zf-ribbon_3	PF13248.6	gi|345004836|ref|YP_004807689.1|	-	0.15	11.5	1.6	3.1	7.3	0.2	2.4	2	0	0	2	2	2	0	zinc-ribbon	domain
zinc_ribbon_2	PF13240.6	gi|345004836|ref|YP_004807689.1|	-	0.42	10.4	3.0	9.1	6.1	0.5	2.4	2	0	0	2	2	2	0	zinc-ribbon	domain
TFIIS_C	PF01096.18	gi|345004836|ref|YP_004807689.1|	-	1.8	8.4	4.0	24	4.9	4.0	2.4	1	1	0	1	1	1	0	Transcription	factor	S-II	(TFIIS)
CSTF2_hinge	PF14327.6	gi|345004838|ref|YP_004807691.1|	-	0.082	13.4	0.2	0.082	13.4	0.2	1.1	1	0	0	1	1	1	0	Hinge	domain	of	cleavage	stimulation	factor	subunit	2
DDE_Tnp_IS66	PF03050.14	gi|345004839|ref|YP_004807692.1|	-	4.4e-49	167.5	0.2	4.4e-49	167.5	0.2	1.9	2	0	0	2	2	2	1	Transposase	IS66	family
SlyX	PF04102.12	gi|345004839|ref|YP_004807692.1|	-	0.00015	22.3	5.5	0.00052	20.6	5.5	1.9	1	0	0	1	1	1	1	SlyX
MscS_porin	PF12795.7	gi|345004839|ref|YP_004807692.1|	-	0.0008	19.0	5.1	0.0008	19.0	5.1	1.8	2	0	0	2	2	2	1	Mechanosensitive	ion	channel	porin	domain
UPF0242	PF06785.11	gi|345004839|ref|YP_004807692.1|	-	0.0026	17.9	11.2	0.0048	17.0	11.2	1.4	1	0	0	1	1	1	1	Uncharacterised	protein	family	(UPF0242)	N-terminus
DUF16	PF01519.16	gi|345004839|ref|YP_004807692.1|	-	0.0029	18.1	5.6	0.0061	17.0	5.6	1.4	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF16
zf-IS66	PF13005.7	gi|345004839|ref|YP_004807692.1|	-	0.0036	17.7	3.7	0.0036	17.7	3.7	2.6	3	0	0	3	3	1	1	zinc-finger	binding	domain	of	transposase	IS66
HemX	PF04375.14	gi|345004839|ref|YP_004807692.1|	-	0.0046	16.3	2.5	0.0074	15.6	2.5	1.2	1	0	0	1	1	1	1	HemX,	putative	uroporphyrinogen-III	C-methyltransferase
Atg14	PF10186.9	gi|345004839|ref|YP_004807692.1|	-	0.006	15.7	4.1	0.01	15.0	4.1	1.3	1	0	0	1	1	1	1	Vacuolar	sorting	38	and	autophagy-related	subunit	14
SKA1	PF07160.12	gi|345004839|ref|YP_004807692.1|	-	0.0097	15.8	0.7	0.017	15.0	0.7	1.3	1	0	0	1	1	1	1	Spindle	and	kinetochore-associated	protein	1
YkyA	PF10368.9	gi|345004839|ref|YP_004807692.1|	-	0.021	14.5	6.4	0.037	13.7	6.4	1.2	1	0	0	1	1	1	0	Putative	cell-wall	binding	lipoprotein
ATG16	PF08614.11	gi|345004839|ref|YP_004807692.1|	-	0.027	14.7	7.0	0.027	14.7	7.0	2.1	3	0	0	3	3	1	0	Autophagy	protein	16	(ATG16)
HOOK	PF05622.12	gi|345004839|ref|YP_004807692.1|	-	0.03	12.5	6.0	0.044	11.9	6.0	1.1	1	0	0	1	1	1	0	HOOK	protein
DDE_Tnp_IS240	PF13610.6	gi|345004839|ref|YP_004807692.1|	-	0.037	14.3	3.3	0.43	10.8	0.0	2.6	2	1	0	2	2	2	0	DDE	domain
AAA_23	PF13476.6	gi|345004839|ref|YP_004807692.1|	-	0.037	14.5	4.7	0.08	13.4	4.7	1.5	1	0	0	1	1	1	0	AAA	domain
Noelin-1	PF12308.8	gi|345004839|ref|YP_004807692.1|	-	0.042	13.8	2.0	0.085	12.9	0.9	1.9	2	0	0	2	2	2	0	Neurogenesis	glycoprotein
Phage_Mu_Gam	PF07352.12	gi|345004839|ref|YP_004807692.1|	-	0.048	13.6	4.8	0.087	12.7	4.8	1.4	1	0	0	1	1	1	0	Bacteriophage	Mu	Gam	like	protein
DUF3584	PF12128.8	gi|345004839|ref|YP_004807692.1|	-	0.059	10.9	6.5	0.088	10.3	6.5	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3584)
XhlA	PF10779.9	gi|345004839|ref|YP_004807692.1|	-	0.062	13.5	8.4	0.15	12.3	8.4	1.7	1	0	0	1	1	1	0	Haemolysin	XhlA
TMPIT	PF07851.13	gi|345004839|ref|YP_004807692.1|	-	0.077	12.2	3.2	0.12	11.6	3.2	1.2	1	0	0	1	1	1	0	TMPIT-like	protein
Phage_HK97_TLTM	PF06120.11	gi|345004839|ref|YP_004807692.1|	-	0.094	11.9	1.1	0.15	11.3	1.1	1.2	1	0	0	1	1	1	0	Tail	length	tape	measure	protein
Exonuc_VII_L	PF02601.15	gi|345004839|ref|YP_004807692.1|	-	0.1	12.1	1.3	0.24	10.9	1.3	1.5	1	0	0	1	1	1	0	Exonuclease	VII,	large	subunit
Fmp27_WPPW	PF10359.9	gi|345004839|ref|YP_004807692.1|	-	0.11	11.3	2.2	0.17	10.7	2.2	1.2	1	0	0	1	1	1	0	RNA	pol	II	promoter	Fmp27	protein	domain
DUF1664	PF07889.12	gi|345004839|ref|YP_004807692.1|	-	0.11	12.5	2.0	0.21	11.7	2.0	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1664)
FPP	PF05911.11	gi|345004839|ref|YP_004807692.1|	-	0.11	10.6	5.4	0.15	10.2	5.4	1.1	1	0	0	1	1	1	0	Filament-like	plant	protein,	long	coiled-coil
HSBP1	PF06825.12	gi|345004839|ref|YP_004807692.1|	-	0.18	11.7	5.5	0.45	10.4	1.1	2.4	1	1	0	2	2	2	0	Heat	shock	factor	binding	protein	1
DUF4446	PF14584.6	gi|345004839|ref|YP_004807692.1|	-	0.19	11.7	2.9	0.34	10.9	2.9	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF4446)
BST2	PF16716.5	gi|345004839|ref|YP_004807692.1|	-	0.26	11.9	6.2	0.68	10.5	6.2	1.7	1	0	0	1	1	1	0	Bone	marrow	stromal	antigen	2
FlaC_arch	PF05377.11	gi|345004839|ref|YP_004807692.1|	-	0.31	11.5	7.4	0.72	10.3	7.4	1.6	1	0	0	1	1	1	0	Flagella	accessory	protein	C	(FlaC)
FliS	PF02561.14	gi|345004839|ref|YP_004807692.1|	-	0.37	11.1	3.1	3.2	8.0	0.6	2.4	2	0	0	2	2	2	0	Flagellar	protein	FliS
AAA_13	PF13166.6	gi|345004839|ref|YP_004807692.1|	-	0.84	8.2	4.7	1.2	7.6	4.7	1.1	1	0	0	1	1	1	0	AAA	domain
ATP-synt_E	PF05680.12	gi|345004839|ref|YP_004807692.1|	-	0.87	10.0	4.7	2.7	8.4	4.7	1.9	1	0	0	1	1	1	0	ATP	synthase	E	chain
Fzo_mitofusin	PF04799.13	gi|345004839|ref|YP_004807692.1|	-	0.88	9.1	3.3	1.6	8.2	3.3	1.3	1	0	0	1	1	1	0	fzo-like	conserved	region
Synaptobrevin	PF00957.21	gi|345004839|ref|YP_004807692.1|	-	1.9	8.3	3.4	3.9	7.3	3.4	1.4	1	0	0	1	1	1	0	Synaptobrevin
PKcGMP_CC	PF16808.5	gi|345004839|ref|YP_004807692.1|	-	2	8.3	20.5	2.9	7.8	13.4	2.9	1	1	1	2	2	2	0	Coiled-coil	N-terminus	of	cGMP-dependent	protein	kinase
UPF0449	PF15136.6	gi|345004839|ref|YP_004807692.1|	-	2.9	8.4	10.9	14	6.3	5.1	2.8	2	0	0	2	2	2	0	Uncharacterised	protein	family	UPF0449
Spc7	PF08317.11	gi|345004839|ref|YP_004807692.1|	-	3.7	6.3	14.0	0.086	11.7	6.7	1.8	2	0	0	2	2	2	0	Spc7	kinetochore	protein
TMF_DNA_bd	PF12329.8	gi|345004839|ref|YP_004807692.1|	-	5.3	7.1	15.6	0.74	9.8	11.5	1.7	2	0	0	2	2	1	0	TATA	element	modulatory	factor	1	DNA	binding
FemAB	PF02388.16	gi|345004839|ref|YP_004807692.1|	-	5.4	5.8	6.3	8.1	5.2	6.3	1.1	1	0	0	1	1	1	0	FemAB	family
DUF3552	PF12072.8	gi|345004839|ref|YP_004807692.1|	-	5.5	6.4	21.2	0.04	13.3	11.5	2.0	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF3552)
DUF5446	PF17522.2	gi|345004839|ref|YP_004807692.1|	-	6.6	7.0	12.0	23	5.3	12.0	1.9	1	0	0	1	1	1	0	Family	of	unknown	function	(DUF5446)
Med9	PF07544.13	gi|345004839|ref|YP_004807692.1|	-	6.6	6.9	12.5	45	4.2	12.5	2.3	1	1	0	1	1	1	0	RNA	polymerase	II	transcription	mediator	complex	subunit	9
RHH_1	PF01402.21	gi|345004840|ref|YP_004807693.1|	-	0.00027	20.8	0.6	0.002	18.0	0.0	2.0	2	0	0	2	2	2	1	Ribbon-helix-helix	protein,	copG	family
SHOCT	PF09851.9	gi|345004840|ref|YP_004807693.1|	-	0.024	14.4	2.0	0.045	13.5	2.0	1.5	1	0	0	1	1	1	0	Short	C-terminal	domain
GvpK	PF05121.12	gi|345004840|ref|YP_004807693.1|	-	0.025	14.6	0.1	0.038	14.0	0.1	1.2	1	0	0	1	1	1	0	Gas	vesicle	protein	K
Glycos_transf_2	PF00535.26	gi|345004842|ref|YP_004807695.1|	-	1.2e-14	54.5	0.0	1.6e-14	54.0	0.0	1.2	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_tranf_2_3	PF13641.6	gi|345004842|ref|YP_004807695.1|	-	4.8e-07	29.9	0.0	7.1e-07	29.3	0.0	1.2	1	0	0	1	1	1	1	Glycosyltransferase	like	family	2
Glyco_tranf_2_4	PF13704.6	gi|345004842|ref|YP_004807695.1|	-	2.3e-06	28.0	0.0	4.1e-06	27.2	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
NTP_transf_3	PF12804.7	gi|345004842|ref|YP_004807695.1|	-	0.063	13.6	0.0	0.082	13.3	0.0	1.3	1	0	0	1	1	1	0	MobA-like	NTP	transferase	domain
HEPN_Swt1	PF18731.1	gi|345004842|ref|YP_004807695.1|	-	0.14	12.5	0.0	0.22	11.9	0.0	1.2	1	0	0	1	1	1	0	Swt1-like	HEPN
Peptidase_M48	PF01435.18	gi|345004844|ref|YP_004807697.1|	-	3.5e-37	128.1	0.0	4.6e-37	127.7	0.0	1.1	1	0	0	1	1	1	1	Peptidase	family	M48
Peptidase_M56	PF05569.11	gi|345004844|ref|YP_004807697.1|	-	5.4e-07	29.1	0.0	2.7e-06	26.8	0.0	1.9	2	0	0	2	2	2	1	BlaR1	peptidase	M56
SprT-like	PF10263.9	gi|345004844|ref|YP_004807697.1|	-	0.0025	17.6	0.0	0.0036	17.1	0.0	1.2	1	0	0	1	1	1	1	SprT-like	family
Ploopntkinase2	PF18747.1	gi|345004844|ref|YP_004807697.1|	-	0.0073	15.6	0.0	0.021	14.1	0.0	1.6	1	1	1	2	2	2	1	P-loop	Nucleotide	Kinase2
Halogen_Hydrol	PF10112.9	gi|345004844|ref|YP_004807697.1|	-	0.05	13.6	0.4	1.3	9.0	0.1	2.2	2	0	0	2	2	2	0	5-bromo-4-chloroindolyl	phosphate	hydrolysis	protein
DUF45	PF01863.17	gi|345004844|ref|YP_004807697.1|	-	0.19	11.7	0.0	0.3	11.1	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	DUF45
Phage_holin_3_6	PF07332.11	gi|345004844|ref|YP_004807697.1|	-	2.3	8.3	11.7	0.081	13.0	2.3	2.3	2	0	0	2	2	2	0	Putative	Actinobacterial	Holin-X,	holin	superfamily	III
DUF21	PF01595.20	gi|345004845|ref|YP_004807698.1|	-	4.8e-46	156.7	1.5	7.7e-46	156.0	1.5	1.3	1	0	0	1	1	1	1	Cyclin	M	transmembrane	N-terminal	domain
CorC_HlyC	PF03471.17	gi|345004845|ref|YP_004807698.1|	-	6e-21	74.3	3.2	6.7e-21	74.1	0.8	2.4	3	0	0	3	3	3	1	Transporter	associated	domain
CBS	PF00571.28	gi|345004845|ref|YP_004807698.1|	-	3.7e-12	46.5	2.3	1.9e-05	25.0	0.0	2.8	3	0	0	3	3	3	2	CBS	domain
Plasmodium_HRP	PF05403.11	gi|345004845|ref|YP_004807698.1|	-	0.012	15.4	0.1	0.018	14.9	0.1	1.2	1	0	0	1	1	1	0	Plasmodium	histidine-rich	protein	(HRPII/III)
CDC45	PF02724.14	gi|345004845|ref|YP_004807698.1|	-	0.92	7.7	9.5	1.1	7.5	9.5	1.1	1	0	0	1	1	1	0	CDC45-like	protein
TrkA_N	PF02254.18	gi|345004846|ref|YP_004807699.1|	-	1.6e-30	105.8	8.8	6.2e-18	65.1	1.4	2.6	2	0	0	2	2	2	2	TrkA-N	domain
TrkA_C	PF02080.21	gi|345004846|ref|YP_004807699.1|	-	2.6e-15	56.0	0.4	1.2e-06	28.3	0.0	3.5	3	0	0	3	3	3	2	TrkA-C	domain
Ion_trans_2	PF07885.16	gi|345004846|ref|YP_004807699.1|	-	0.026	14.5	6.2	0.048	13.6	6.2	1.5	1	0	0	1	1	1	0	Ion	channel
DUF1330	PF07045.11	gi|345004848|ref|YP_004807701.1|	-	0.086	13.2	0.1	0.099	13.0	0.1	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1330)
Glycos_transf_2	PF00535.26	gi|345004850|ref|YP_004807703.1|	-	8.7e-19	68.0	0.1	1.1e-18	67.6	0.1	1.2	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_tranf_2_3	PF13641.6	gi|345004850|ref|YP_004807703.1|	-	1.9e-06	28.0	1.2	3.1e-06	27.3	1.2	1.4	1	1	0	1	1	1	1	Glycosyltransferase	like	family	2
Glyco_tranf_2_2	PF10111.9	gi|345004850|ref|YP_004807703.1|	-	1.6e-05	24.6	1.5	0.00011	21.7	0.2	2.1	2	0	0	2	2	2	1	Glycosyltransferase	like	family	2
Glyco_trans_2_3	PF13632.6	gi|345004850|ref|YP_004807703.1|	-	0.016	15.1	0.0	0.02	14.8	0.0	1.3	1	0	0	1	1	1	0	Glycosyl	transferase	family	group	2
Glycos_transf_1	PF00534.20	gi|345004851|ref|YP_004807704.1|	-	7.4e-21	74.4	0.0	1.2e-20	73.8	0.0	1.2	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.6	gi|345004851|ref|YP_004807704.1|	-	1e-12	48.7	0.0	1.6e-12	48.0	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_transf_4	PF13439.6	gi|345004851|ref|YP_004807704.1|	-	0.00013	22.0	0.5	0.00023	21.2	0.3	1.5	1	1	0	1	1	1	1	Glycosyltransferase	Family	4
Phosphodiest	PF01663.22	gi|345004852|ref|YP_004807705.1|	-	7.1e-37	127.8	0.3	3.4e-36	125.6	0.3	1.8	1	1	0	1	1	1	1	Type	I	phosphodiesterase	/	nucleotide	pyrophosphatase
Polysacc_deac_1	PF01522.21	gi|345004853|ref|YP_004807706.1|	-	0.00099	19.0	0.0	0.0024	17.8	0.0	1.8	1	1	0	1	1	1	1	Polysaccharide	deacetylase
Peptidase_M55	PF04951.13	gi|345004853|ref|YP_004807706.1|	-	0.0012	18.3	0.0	0.0019	17.7	0.0	1.2	1	0	0	1	1	1	1	D-aminopeptidase
Polysacc_deac_1	PF01522.21	gi|345004855|ref|YP_004807708.1|	-	0.001	19.0	0.1	0.0029	17.5	0.0	1.7	2	0	0	2	2	2	1	Polysaccharide	deacetylase
Sulfatase	PF00884.23	gi|345004856|ref|YP_004807709.1|	-	3.1e-26	92.5	0.0	4.6e-26	91.9	0.0	1.2	1	0	0	1	1	1	1	Sulfatase
Phosphodiest	PF01663.22	gi|345004856|ref|YP_004807709.1|	-	2.3e-05	24.2	0.0	3.3e-05	23.7	0.0	1.3	1	0	0	1	1	1	1	Type	I	phosphodiesterase	/	nucleotide	pyrophosphatase
DUF4994	PF16385.5	gi|345004856|ref|YP_004807709.1|	-	0.00087	19.2	0.0	0.0063	16.4	0.0	2.4	2	1	0	2	2	2	1	Domain	of	unknown	function
DUF4976	PF16347.5	gi|345004856|ref|YP_004807709.1|	-	0.0018	18.5	0.0	0.0035	17.6	0.0	1.5	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4976)
Sulfatase_C	PF14707.6	gi|345004856|ref|YP_004807709.1|	-	0.012	16.3	0.0	0.14	12.9	0.0	2.2	2	0	0	2	2	2	0	C-terminal	region	of	aryl-sulfatase
DUF1501	PF07394.12	gi|345004856|ref|YP_004807709.1|	-	0.027	13.5	0.0	0.042	12.9	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1501)
PPDK_N	PF01326.19	gi|345004856|ref|YP_004807709.1|	-	0.072	12.4	0.0	0.11	11.7	0.0	1.2	1	0	0	1	1	1	0	Pyruvate	phosphate	dikinase,	PEP/pyruvate	binding	domain
DDE_Tnp_IS240	PF13610.6	gi|345004857|ref|YP_004807710.1|	-	5.5e-14	52.6	0.1	8.4e-14	52.0	0.1	1.2	1	0	0	1	1	1	1	DDE	domain
rve	PF00665.26	gi|345004857|ref|YP_004807710.1|	-	0.0065	16.6	0.2	0.011	16.0	0.2	1.3	1	0	0	1	1	1	1	Integrase	core	domain
DDE_Tnp_IS66	PF03050.14	gi|345004857|ref|YP_004807710.1|	-	0.0071	15.8	0.3	0.027	14.0	0.3	1.9	1	1	0	1	1	1	1	Transposase	IS66	family
Polysacc_synt	PF01943.17	gi|345004858|ref|YP_004807711.1|	-	2.7e-21	76.2	17.7	2.7e-21	76.2	17.7	2.5	2	1	0	2	2	2	1	Polysaccharide	biosynthesis	protein
Polysacc_synt_3	PF13440.6	gi|345004858|ref|YP_004807711.1|	-	1.6e-18	67.0	4.8	1.6e-18	67.0	4.8	2.0	1	1	1	2	2	2	1	Polysaccharide	biosynthesis	protein
Polysacc_synt_C	PF14667.6	gi|345004858|ref|YP_004807711.1|	-	1.8e-16	60.5	20.6	1.8e-16	60.5	20.6	3.5	3	0	0	3	3	3	2	Polysaccharide	biosynthesis	C-terminal	domain
Phage_holin_3_3	PF16083.5	gi|345004858|ref|YP_004807711.1|	-	0.0078	16.3	0.5	0.0078	16.3	0.5	3.4	4	0	0	4	4	4	1	LydA	holin	phage,	holin	superfamily	III
B12D	PF06522.11	gi|345004858|ref|YP_004807711.1|	-	0.14	12.0	0.4	0.54	10.1	0.4	2.0	1	0	0	1	1	1	0	NADH-ubiquinone	reductase	complex	1	MLRQ	subunit
Glycos_transf_1	PF00534.20	gi|345004859|ref|YP_004807712.1|	-	9.9e-35	119.6	0.0	1.8e-34	118.8	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.6	gi|345004859|ref|YP_004807712.1|	-	1e-29	103.7	0.0	2.2e-29	102.6	0.0	1.6	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_transf_4	PF13439.6	gi|345004859|ref|YP_004807712.1|	-	2.9e-12	46.9	5.4	4e-12	46.4	2.4	2.4	2	1	0	2	2	2	1	Glycosyltransferase	Family	4
Glyco_trans_1_2	PF13524.6	gi|345004859|ref|YP_004807712.1|	-	3.1e-09	37.1	0.0	6.1e-09	36.2	0.0	1.5	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_4_4	PF13579.6	gi|345004859|ref|YP_004807712.1|	-	1.5e-07	32.0	7.0	2e-07	31.6	2.3	2.7	2	2	0	2	2	2	1	Glycosyl	transferase	4-like	domain
Glyco_trans_4_2	PF13477.6	gi|345004859|ref|YP_004807712.1|	-	0.00058	19.9	0.0	0.0011	19.0	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	transferase	4-like
SIS	PF01380.22	gi|345004860|ref|YP_004807713.1|	-	6.8e-41	139.2	0.0	1.5e-21	76.6	0.1	2.4	2	0	0	2	2	2	2	SIS	domain
GATase_6	PF13522.6	gi|345004860|ref|YP_004807713.1|	-	6e-21	75.1	0.1	1.5e-20	73.7	0.1	1.7	1	0	0	1	1	1	1	Glutamine	amidotransferase	domain
GATase_7	PF13537.6	gi|345004860|ref|YP_004807713.1|	-	1.2e-19	70.4	0.0	3.4e-19	69.0	0.0	1.7	2	0	0	2	2	2	1	Glutamine	amidotransferase	domain
GATase_4	PF13230.6	gi|345004860|ref|YP_004807713.1|	-	0.078	11.9	0.1	0.12	11.2	0.1	1.3	1	0	0	1	1	1	0	Glutamine	amidotransferases	class-II
NTP_transferase	PF00483.23	gi|345004861|ref|YP_004807714.1|	-	2.1e-42	145.4	0.0	2.7e-42	145.1	0.0	1.1	1	0	0	1	1	1	1	Nucleotidyl	transferase
Hexapep	PF00132.24	gi|345004861|ref|YP_004807714.1|	-	9.2e-18	63.2	21.3	4.2e-07	29.5	0.2	4.0	2	1	1	3	3	3	3	Bacterial	transferase	hexapeptide	(six	repeats)
NTP_transf_3	PF12804.7	gi|345004861|ref|YP_004807714.1|	-	3e-14	53.7	0.0	4.3e-14	53.2	0.0	1.3	1	0	0	1	1	1	1	MobA-like	NTP	transferase	domain
Hexapep_2	PF14602.6	gi|345004861|ref|YP_004807714.1|	-	1e-07	31.5	23.7	0.0063	16.3	3.2	5.2	3	1	2	5	5	5	4	Hexapeptide	repeat	of	succinyl-transferase
DUF4954	PF16314.5	gi|345004861|ref|YP_004807714.1|	-	4.3e-05	21.9	0.2	7.7e-05	21.0	0.2	1.3	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4954)
IspD	PF01128.19	gi|345004861|ref|YP_004807714.1|	-	0.00035	20.4	0.0	0.0011	18.7	0.0	1.8	1	0	0	1	1	1	1	2-C-methyl-D-erythritol	4-phosphate	cytidylyltransferase
Fucokinase	PF07959.12	gi|345004861|ref|YP_004807714.1|	-	0.0016	17.5	0.0	0.0024	16.9	0.0	1.3	1	0	0	1	1	1	1	L-fucokinase
CTP_transf_3	PF02348.19	gi|345004861|ref|YP_004807714.1|	-	0.0037	17.2	0.0	0.0058	16.6	0.0	1.2	1	0	0	1	1	1	1	Cytidylyltransferase
Epimerase	PF01370.21	gi|345004862|ref|YP_004807715.1|	-	2e-36	125.7	0.0	2.5e-36	125.4	0.0	1.1	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
GDP_Man_Dehyd	PF16363.5	gi|345004862|ref|YP_004807715.1|	-	1.1e-26	94.0	0.0	1.5e-26	93.6	0.0	1.1	1	0	0	1	1	1	1	GDP-mannose	4,6	dehydratase
RmlD_sub_bind	PF04321.17	gi|345004862|ref|YP_004807715.1|	-	3.3e-20	72.4	0.0	4.1e-20	72.1	0.0	1.1	1	0	0	1	1	1	1	RmlD	substrate	binding	domain
3Beta_HSD	PF01073.19	gi|345004862|ref|YP_004807715.1|	-	1.5e-15	56.9	0.0	2.5e-15	56.2	0.0	1.3	1	0	0	1	1	1	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
Polysacc_synt_2	PF02719.15	gi|345004862|ref|YP_004807715.1|	-	1.5e-12	47.3	0.0	7.7e-12	44.9	0.0	2.0	1	1	0	1	1	1	1	Polysaccharide	biosynthesis	protein
NAD_binding_10	PF13460.6	gi|345004862|ref|YP_004807715.1|	-	5.6e-08	32.9	0.0	9.2e-08	32.2	0.0	1.4	1	0	0	1	1	1	1	NAD(P)H-binding
NAD_binding_4	PF07993.12	gi|345004862|ref|YP_004807715.1|	-	9.6e-08	31.5	0.0	0.00014	21.1	0.0	2.7	2	1	0	2	2	2	2	Male	sterility	protein
NmrA	PF05368.13	gi|345004862|ref|YP_004807715.1|	-	8.8e-05	22.2	0.4	0.00044	19.9	0.3	2.0	2	0	0	2	2	2	1	NmrA-like	family
UDPG_MGDP_dh_N	PF03721.14	gi|345004862|ref|YP_004807715.1|	-	0.063	12.8	0.1	0.13	11.8	0.1	1.5	1	0	0	1	1	1	0	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
Epimerase	PF01370.21	gi|345004863|ref|YP_004807716.1|	-	3.4e-47	160.9	0.0	4.1e-47	160.7	0.0	1.1	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
GDP_Man_Dehyd	PF16363.5	gi|345004863|ref|YP_004807716.1|	-	3.3e-38	131.9	0.0	4.6e-38	131.5	0.0	1.2	1	0	0	1	1	1	1	GDP-mannose	4,6	dehydratase
3Beta_HSD	PF01073.19	gi|345004863|ref|YP_004807716.1|	-	2.2e-28	99.1	0.0	3e-28	98.6	0.0	1.1	1	0	0	1	1	1	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
NAD_binding_10	PF13460.6	gi|345004863|ref|YP_004807716.1|	-	4.1e-20	72.4	0.1	6.5e-20	71.8	0.1	1.3	1	0	0	1	1	1	1	NAD(P)H-binding
RmlD_sub_bind	PF04321.17	gi|345004863|ref|YP_004807716.1|	-	1.1e-18	67.4	0.1	1.4e-18	67.0	0.1	1.1	1	0	0	1	1	1	1	RmlD	substrate	binding	domain
Polysacc_synt_2	PF02719.15	gi|345004863|ref|YP_004807716.1|	-	2.4e-10	40.0	0.0	4.4e-10	39.2	0.0	1.5	1	1	0	1	1	1	1	Polysaccharide	biosynthesis	protein
NmrA	PF05368.13	gi|345004863|ref|YP_004807716.1|	-	1.4e-09	37.9	0.1	2.6e-09	37.0	0.1	1.6	1	1	0	1	1	1	1	NmrA-like	family
NAD_binding_4	PF07993.12	gi|345004863|ref|YP_004807716.1|	-	2.5e-08	33.4	0.6	2.3e-05	23.7	0.1	2.3	2	0	0	2	2	2	2	Male	sterility	protein
adh_short	PF00106.25	gi|345004863|ref|YP_004807716.1|	-	0.00018	21.0	0.1	0.00034	20.1	0.1	1.4	1	0	0	1	1	1	1	short	chain	dehydrogenase
KR	PF08659.10	gi|345004863|ref|YP_004807716.1|	-	0.0021	18.0	1.0	0.014	15.3	1.0	2.0	1	1	0	1	1	1	1	KR	domain
DUF3834	PF12916.7	gi|345004863|ref|YP_004807716.1|	-	0.014	14.7	0.1	0.024	13.9	0.1	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3834)
Sacchrp_dh_NADP	PF03435.18	gi|345004863|ref|YP_004807716.1|	-	0.049	13.9	0.1	0.13	12.5	0.1	1.9	1	1	0	1	1	1	0	Saccharopine	dehydrogenase	NADP	binding	domain
F420_oxidored	PF03807.17	gi|345004863|ref|YP_004807716.1|	-	0.12	13.0	0.2	2	9.0	0.0	2.7	2	1	0	3	3	3	0	NADP	oxidoreductase	coenzyme	F420-dependent
Epimerase	PF01370.21	gi|345004864|ref|YP_004807717.1|	-	3.2e-22	79.2	0.0	6.2e-22	78.2	0.0	1.4	1	1	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
GDP_Man_Dehyd	PF16363.5	gi|345004864|ref|YP_004807717.1|	-	4.7e-15	55.8	0.0	2.6e-14	53.4	0.0	1.9	1	1	0	1	1	1	1	GDP-mannose	4,6	dehydratase
Polysacc_synt_2	PF02719.15	gi|345004864|ref|YP_004807717.1|	-	1.6e-09	37.4	0.0	0.00012	21.3	0.0	2.2	2	0	0	2	2	2	2	Polysaccharide	biosynthesis	protein
RmlD_sub_bind	PF04321.17	gi|345004864|ref|YP_004807717.1|	-	0.0011	18.1	0.0	0.014	14.5	0.0	2.5	3	0	0	3	3	3	1	RmlD	substrate	binding	domain
KR	PF08659.10	gi|345004864|ref|YP_004807717.1|	-	0.089	12.7	0.0	0.14	12.1	0.0	1.2	1	0	0	1	1	1	0	KR	domain
T2SSB	PF16537.5	gi|345004864|ref|YP_004807717.1|	-	0.16	11.6	0.0	0.47	10.1	0.0	1.8	2	0	0	2	2	2	0	Type	II	secretion	system	protein	B
TrmB	PF01978.19	gi|345004865|ref|YP_004807718.1|	-	2.1e-16	59.6	0.0	4.1e-16	58.6	0.0	1.6	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_IclR	PF09339.10	gi|345004865|ref|YP_004807718.1|	-	0.00048	19.9	0.0	0.0011	18.8	0.0	1.6	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
Rrf2	PF02082.20	gi|345004865|ref|YP_004807718.1|	-	0.0048	17.2	0.0	0.0088	16.4	0.0	1.4	1	0	0	1	1	1	1	Transcriptional	regulator
MarR_2	PF12802.7	gi|345004865|ref|YP_004807718.1|	-	0.0051	16.7	0.1	0.024	14.5	0.0	2.1	3	0	0	3	3	3	1	MarR	family
Regulator_TrmB	PF11495.8	gi|345004865|ref|YP_004807718.1|	-	0.0052	16.0	0.0	0.2	10.8	0.1	2.2	1	1	0	2	2	2	1	Archaeal	transcriptional	regulator	TrmB
STT3	PF02516.14	gi|345004867|ref|YP_004807720.1|	-	4.1e-23	82.1	8.0	4.1e-23	82.1	8.0	3.2	2	1	0	3	3	3	2	Oligosaccharyl	transferase	STT3	subunit
AglB_L1	PF18079.1	gi|345004867|ref|YP_004807720.1|	-	8.4e-21	74.1	5.6	2.5e-20	72.5	5.6	1.9	1	0	0	1	1	1	1	Archaeal	glycosylation	protein	B	long	peripheral	domain
PMT_2	PF13231.6	gi|345004867|ref|YP_004807720.1|	-	0.00021	21.6	1.5	0.00021	21.6	1.5	4.9	4	2	1	5	5	5	1	Dolichyl-phosphate-mannose-protein	mannosyltransferase
DUF368	PF04018.13	gi|345004868|ref|YP_004807721.1|	-	3.7e-61	206.8	12.5	3.7e-61	206.8	12.5	1.4	1	1	0	1	1	1	1	Domain	of	unknown	function	(DUF368)
DUF2374	PF09574.10	gi|345004868|ref|YP_004807721.1|	-	0.4	10.5	11.6	0.96	9.3	0.7	3.0	3	0	0	3	3	3	0	Protein	of	unknown	function	(Duf2374)
tRNA-synt_2b	PF00587.25	gi|345004869|ref|YP_004807722.1|	-	1e-26	94.0	0.0	2e-26	93.1	0.0	1.5	1	0	0	1	1	1	1	tRNA	synthetase	class	II	core	domain	(G,	H,	P,	S	and	T)
HGTP_anticodon	PF03129.20	gi|345004869|ref|YP_004807722.1|	-	7.5e-14	51.7	0.0	1.8e-13	50.4	0.0	1.7	1	0	0	1	1	1	1	Anticodon	binding	domain
tRNA_SAD	PF07973.14	gi|345004869|ref|YP_004807722.1|	-	8.8e-12	44.9	0.0	1.7e-11	44.0	0.0	1.5	1	0	0	1	1	1	1	Threonyl	and	Alanyl	tRNA	synthetase	second	additional	domain
TGS	PF02824.21	gi|345004869|ref|YP_004807722.1|	-	1.5e-11	44.1	0.2	3.1e-11	43.1	0.2	1.6	1	0	0	1	1	1	1	TGS	domain
tRNA-synt_His	PF13393.6	gi|345004869|ref|YP_004807722.1|	-	0.011	15.0	0.1	0.037	13.3	0.0	1.8	2	0	0	2	2	2	0	Histidyl-tRNA	synthetase
Ceramidase	PF05875.12	gi|345004870|ref|YP_004807723.1|	-	0.076	12.4	0.4	0.13	11.7	0.4	1.4	1	0	0	1	1	1	0	Ceramidase
NEMP	PF10225.9	gi|345004870|ref|YP_004807723.1|	-	0.099	12.3	1.0	0.15	11.7	1.0	1.2	1	0	0	1	1	1	0	NEMP	family
7TM-7TMR_HD	PF07698.11	gi|345004870|ref|YP_004807723.1|	-	0.9	9.3	8.0	0.32	10.7	5.3	1.5	2	0	0	2	2	2	0	7TM	receptor	with	intracellular	HD	hydrolase
FAD-oxidase_C	PF02913.19	gi|345004871|ref|YP_004807724.1|	-	1.1e-59	202.1	0.8	4.3e-59	200.2	0.5	2.1	2	0	0	2	2	2	1	FAD	linked	oxidases,	C-terminal	domain
FAD_binding_4	PF01565.23	gi|345004871|ref|YP_004807724.1|	-	7e-41	139.2	1.2	1.4e-40	138.3	1.2	1.5	1	0	0	1	1	1	1	FAD	binding	domain
Fer4_8	PF13183.6	gi|345004871|ref|YP_004807724.1|	-	2.2e-10	40.8	4.0	5.7e-10	39.5	4.0	1.7	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_17	PF13534.6	gi|345004871|ref|YP_004807724.1|	-	3.2e-10	40.4	3.0	6.1e-10	39.5	3.0	1.5	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
CCG	PF02754.16	gi|345004871|ref|YP_004807724.1|	-	1.4e-06	28.4	1.9	8.1e-05	22.8	0.2	2.9	3	0	0	3	3	2	1	Cysteine-rich	domain
Fer4_10	PF13237.6	gi|345004871|ref|YP_004807724.1|	-	1.5e-05	25.0	3.5	0.0086	16.2	0.3	2.4	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_7	PF12838.7	gi|345004871|ref|YP_004807724.1|	-	7.2e-05	23.3	4.4	0.00017	22.1	4.4	1.7	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_2	PF12797.7	gi|345004871|ref|YP_004807724.1|	-	0.00097	19.1	10.4	0.12	12.5	1.4	2.5	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_9	PF13187.6	gi|345004871|ref|YP_004807724.1|	-	0.0011	19.1	3.6	0.0048	17.0	3.9	2.0	1	1	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_21	PF14697.6	gi|345004871|ref|YP_004807724.1|	-	0.003	17.7	3.7	0.033	14.3	0.3	2.6	2	0	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4	PF00037.27	gi|345004871|ref|YP_004807724.1|	-	0.0084	15.9	12.4	0.054	13.3	3.3	2.5	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_4	PF12800.7	gi|345004871|ref|YP_004807724.1|	-	0.1	13.2	12.4	0.25	12.0	2.5	2.5	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_6	PF12837.7	gi|345004871|ref|YP_004807724.1|	-	0.22	11.7	11.8	0.42	10.8	2.7	2.5	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_16	PF13484.6	gi|345004871|ref|YP_004807724.1|	-	3.3	8.7	6.4	4.6	8.3	1.7	2.0	1	1	1	2	2	2	0	4Fe-4S	double	cluster	binding	domain
Aminotran_5	PF00266.19	gi|345004872|ref|YP_004807725.1|	-	4e-35	121.5	0.0	4.9e-35	121.2	0.0	1.1	1	0	0	1	1	1	1	Aminotransferase	class-V
Cys_Met_Meta_PP	PF01053.20	gi|345004872|ref|YP_004807725.1|	-	0.00056	18.5	0.0	0.00081	18.0	0.0	1.1	1	0	0	1	1	1	1	Cys/Met	metabolism	PLP-dependent	enzyme
DegT_DnrJ_EryC1	PF01041.17	gi|345004872|ref|YP_004807725.1|	-	0.0088	15.4	0.9	0.016	14.5	0.9	1.3	1	0	0	1	1	1	1	DegT/DnrJ/EryC1/StrS	aminotransferase	family
OKR_DC_1	PF01276.20	gi|345004872|ref|YP_004807725.1|	-	0.092	11.5	0.0	0.14	10.8	0.0	1.2	1	0	0	1	1	1	0	Orn/Lys/Arg	decarboxylase,	major	domain
BofA	PF07441.11	gi|345004873|ref|YP_004807726.1|	-	1.3e-10	41.3	16.5	1.6e-10	41.0	16.5	1.1	1	0	0	1	1	1	1	SigmaK-factor	processing	regulatory	protein	BofA
ALMT	PF11744.8	gi|345004873|ref|YP_004807726.1|	-	0.3	9.9	3.5	0.29	9.9	3.5	1.1	1	0	0	1	1	1	0	Aluminium	activated	malate	transporter
Peptidase_U4	PF03419.13	gi|345004873|ref|YP_004807726.1|	-	1.4	8.1	6.6	1.4	8.1	6.6	1.0	1	0	0	1	1	1	0	Sporulation	factor	SpoIIGA
PTPS	PF01242.19	gi|345004875|ref|YP_004807728.1|	-	1.8e-20	73.2	0.0	2.4e-20	72.7	0.0	1.1	1	0	0	1	1	1	1	6-pyruvoyl	tetrahydropterin	synthase
Radical_SAM	PF04055.21	gi|345004876|ref|YP_004807729.1|	-	2.4e-26	93.1	0.4	5e-26	92.1	0.4	1.5	1	1	0	1	1	1	1	Radical	SAM	superfamily
Fer4_14	PF13394.6	gi|345004876|ref|YP_004807729.1|	-	5.2e-14	52.4	0.0	1.1e-13	51.4	0.0	1.5	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
Fer4_12	PF13353.6	gi|345004876|ref|YP_004807729.1|	-	7.9e-11	42.4	0.0	1.4e-10	41.6	0.0	1.4	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
TP_methylase	PF00590.20	gi|345004876|ref|YP_004807729.1|	-	0.06	13.3	0.0	0.13	12.2	0.0	1.5	1	0	0	1	1	1	0	Tetrapyrrole	(Corrin/Porphyrin)	Methylases
Oxidored_nitro	PF00148.19	gi|345004876|ref|YP_004807729.1|	-	0.086	11.6	0.0	9.6	4.8	0.0	2.0	2	0	0	2	2	2	0	Nitrogenase	component	1	type	Oxidoreductase
QueC	PF06508.13	gi|345004877|ref|YP_004807730.1|	-	2.8e-69	232.8	0.0	3.2e-69	232.6	0.0	1.0	1	0	0	1	1	1	1	Queuosine	biosynthesis	protein	QueC
Asn_synthase	PF00733.21	gi|345004877|ref|YP_004807730.1|	-	0.00038	20.2	0.4	0.00053	19.8	0.4	1.1	1	0	0	1	1	1	1	Asparagine	synthase
ThiI	PF02568.14	gi|345004877|ref|YP_004807730.1|	-	0.016	14.8	0.0	0.046	13.3	0.0	1.9	2	1	0	2	2	2	0	Thiamine	biosynthesis	protein	(ThiI)
tRNA_Me_trans	PF03054.16	gi|345004877|ref|YP_004807730.1|	-	0.016	14.0	0.0	0.023	13.5	0.0	1.1	1	0	0	1	1	1	0	tRNA	methyl	transferase
MFS_1	PF07690.16	gi|345004878|ref|YP_004807731.1|	-	2.1e-22	79.6	56.2	7.3e-18	64.6	35.0	3.1	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
Bac_luciferase	PF00296.20	gi|345004879|ref|YP_004807732.1|	-	2.4e-82	276.9	7.8	3e-82	276.5	7.8	1.0	1	0	0	1	1	1	1	Luciferase-like	monooxygenase
PGF-CTERM	PF18204.1	gi|345004880|ref|YP_004807733.1|	-	7e-06	25.8	7.5	1.1e-05	25.2	7.5	1.4	1	0	0	1	1	1	1	PGF-CTERM	motif
FAD_binding_7	PF03441.14	gi|345004881|ref|YP_004807734.1|	-	2.7e-78	262.1	1.6	3.7e-78	261.6	1.6	1.2	1	0	0	1	1	1	1	FAD	binding	domain	of	DNA	photolyase
DNA_photolyase	PF00875.18	gi|345004881|ref|YP_004807734.1|	-	1.5e-49	168.1	0.2	4.1e-49	166.7	0.2	1.8	1	0	0	1	1	1	1	DNA	photolyase
Requiem_N	PF14051.6	gi|345004881|ref|YP_004807734.1|	-	0.15	12.2	0.7	0.88	9.8	0.3	2.4	2	0	0	2	2	2	0	N-terminal	domain	of	DPF2/REQ.
zf-TFIIB	PF13453.6	gi|345004882|ref|YP_004807735.1|	-	0.0016	17.8	0.5	0.0025	17.1	0.5	1.4	1	0	0	1	1	1	1	Transcription	factor	zinc-finger
Zn_Tnp_IS1595	PF12760.7	gi|345004882|ref|YP_004807735.1|	-	0.003	17.5	8.0	0.02	14.9	2.5	1.6	1	1	1	2	2	2	2	Transposase	zinc-ribbon	domain
zf-LITAF-like	PF10601.9	gi|345004882|ref|YP_004807735.1|	-	0.0086	16.3	0.0	0.57	10.5	0.0	2.1	2	0	0	2	2	2	1	LITAF-like	zinc	ribbon	domain
DUF2757	PF10955.8	gi|345004882|ref|YP_004807735.1|	-	0.015	15.6	0.0	1.6	9.0	0.0	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2757)
zf-ACC	PF17848.1	gi|345004882|ref|YP_004807735.1|	-	0.031	14.3	1.9	0.68	10.1	0.1	2.2	2	0	0	2	2	2	0	Acetyl-coA	carboxylase	zinc	finger	domain
Rubredoxin_2	PF18073.1	gi|345004882|ref|YP_004807735.1|	-	0.036	13.8	2.8	0.41	10.4	0.6	2.2	2	0	0	2	2	2	0	Rubredoxin	metal	binding	domain
Zn_ribbon_SprT	PF17283.2	gi|345004882|ref|YP_004807735.1|	-	0.037	14.0	0.5	2.3	8.2	0.2	2.1	2	0	0	2	2	2	0	SprT-like	zinc	ribbon	domain
DZR	PF12773.7	gi|345004882|ref|YP_004807735.1|	-	0.043	13.8	0.7	0.12	12.4	0.7	1.7	1	1	0	1	1	1	0	Double	zinc	ribbon
zf-ribbon_3	PF13248.6	gi|345004882|ref|YP_004807735.1|	-	0.052	13.0	0.9	3.2	7.3	0.1	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
Terminase_GpA	PF05876.12	gi|345004882|ref|YP_004807735.1|	-	0.053	12.1	0.3	0.058	11.9	0.3	1.0	1	0	0	1	1	1	0	Phage	terminase	large	subunit	(GpA)
zf-C2H2_9	PF16293.5	gi|345004882|ref|YP_004807735.1|	-	0.086	12.7	0.6	1.3	8.9	0.1	2.1	2	0	0	2	2	2	0	C2H2	type	zinc-finger	(1	copy)
UPF0547	PF10571.9	gi|345004882|ref|YP_004807735.1|	-	0.095	12.8	5.4	3.8	7.7	0.7	2.2	2	0	0	2	2	2	0	Uncharacterised	protein	family	UPF0547
HypA	PF01155.19	gi|345004882|ref|YP_004807735.1|	-	0.1	12.7	0.1	0.11	12.5	0.1	1.1	1	0	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
DUF2614	PF11023.8	gi|345004882|ref|YP_004807735.1|	-	0.11	12.6	0.3	1.5	8.9	0.0	2.0	1	1	1	2	2	2	0	Zinc-ribbon	containing	domain
zinc-ribbons_6	PF07191.12	gi|345004882|ref|YP_004807735.1|	-	0.16	12.0	2.2	2.4	8.2	0.2	2.0	1	1	1	2	2	2	0	zinc-ribbons
Zn-ribbon_8	PF09723.10	gi|345004882|ref|YP_004807735.1|	-	0.19	11.8	5.1	1.1	9.4	0.4	2.1	1	1	1	2	2	2	0	Zinc	ribbon	domain
zf-RanBP	PF00641.18	gi|345004882|ref|YP_004807735.1|	-	1.8	7.9	6.3	0.51	9.7	1.1	2.1	2	0	0	2	2	2	0	Zn-finger	in	Ran	binding	protein	and	others
DJ-1_PfpI	PF01965.24	gi|345004883|ref|YP_004807736.1|	-	1.4e-23	83.5	0.3	2.2e-23	82.9	0.3	1.3	1	1	0	1	1	1	1	DJ-1/PfpI	family
GATase_3	PF07685.14	gi|345004883|ref|YP_004807736.1|	-	0.051	13.2	0.0	0.065	12.8	0.0	1.3	1	0	0	1	1	1	0	CobB/CobQ-like	glutamine	amidotransferase	domain
MFS_1	PF07690.16	gi|345004884|ref|YP_004807737.1|	-	6.8e-34	117.3	71.8	2.9e-27	95.6	41.2	2.0	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
TcpE	PF12648.7	gi|345004884|ref|YP_004807737.1|	-	1.6	9.3	0.0	1.6	9.3	0.0	2.9	3	1	0	3	3	3	0	TcpE	family
Sod_Fe_N	PF00081.22	gi|345004885|ref|YP_004807738.1|	-	7.4e-31	106.5	0.6	1.4e-30	105.6	0.6	1.5	1	0	0	1	1	1	1	Iron/manganese	superoxide	dismutases,	alpha-hairpin	domain
Sod_Fe_C	PF02777.18	gi|345004885|ref|YP_004807738.1|	-	9.2e-28	96.4	0.0	1.7e-27	95.6	0.0	1.4	1	0	0	1	1	1	1	Iron/manganese	superoxide	dismutases,	C-terminal	domain
Thy1	PF02511.15	gi|345004887|ref|YP_004807740.1|	-	4.9e-57	192.8	0.0	5.7e-57	192.6	0.0	1.0	1	0	0	1	1	1	1	Thymidylate	synthase	complementing	protein
Adeno_E4	PF05385.11	gi|345004887|ref|YP_004807740.1|	-	0.076	13.1	0.0	0.13	12.3	0.0	1.3	1	0	0	1	1	1	0	Mastadenovirus	early	E4	13	kDa	protein
Glyoxalase	PF00903.25	gi|345004888|ref|YP_004807741.1|	-	3.1e-26	92.0	0.2	1.1e-24	87.1	0.2	2.9	1	1	0	1	1	1	1	Glyoxalase/Bleomycin	resistance	protein/Dioxygenase	superfamily
Glyoxalase_4	PF13669.6	gi|345004888|ref|YP_004807741.1|	-	1.6e-05	25.1	0.1	0.089	13.1	0.0	3.2	3	0	0	3	3	3	2	Glyoxalase/Bleomycin	resistance	protein/Dioxygenase	superfamily
Glyoxalase_3	PF13468.6	gi|345004888|ref|YP_004807741.1|	-	0.03	14.5	0.7	3.3	7.8	0.0	2.7	2	1	1	3	3	3	0	Glyoxalase-like	domain
LTD	PF00932.19	gi|345004889|ref|YP_004807742.1|	-	7.1e-25	87.5	0.3	1.5e-24	86.5	0.3	1.5	1	0	0	1	1	1	1	Lamin	Tail	Domain
SNase	PF00565.17	gi|345004889|ref|YP_004807742.1|	-	1.1e-20	74.2	0.0	2.1e-20	73.2	0.0	1.5	1	0	0	1	1	1	1	Staphylococcal	nuclease	homologue
Molybdopterin	PF00384.22	gi|345004891|ref|YP_004807744.1|	-	9.5e-79	265.4	0.0	1.2e-78	265.1	0.0	1.1	1	0	0	1	1	1	1	Molybdopterin	oxidoreductase
Molydop_binding	PF01568.21	gi|345004891|ref|YP_004807744.1|	-	7.1e-34	116.2	0.1	1.5e-33	115.1	0.1	1.6	1	0	0	1	1	1	1	Molydopterin	dinucleotide	binding	domain
Fer2_4	PF13510.6	gi|345004891|ref|YP_004807744.1|	-	2.1e-20	72.6	3.2	5.2e-20	71.3	3.2	1.7	1	0	0	1	1	1	1	2Fe-2S	iron-sulfur	cluster	binding	domain
Molybdop_Fe4S4	PF04879.16	gi|345004891|ref|YP_004807744.1|	-	4e-12	45.9	0.2	4e-12	45.9	0.2	2.3	2	0	0	2	2	1	1	Molybdopterin	oxidoreductase	Fe4S4	domain
NADH-G_4Fe-4S_3	PF10588.9	gi|345004891|ref|YP_004807744.1|	-	4.6e-12	45.3	0.5	4.6e-12	45.3	0.5	2.2	2	0	0	2	2	1	1	NADH-ubiquinone	oxidoreductase-G	iron-sulfur	binding	region
Fer4_21	PF14697.6	gi|345004891|ref|YP_004807744.1|	-	7.1e-09	35.7	8.9	7.1e-09	35.7	8.9	3.0	4	0	0	4	4	3	1	4Fe-4S	dicluster	domain
Fer4_7	PF12838.7	gi|345004891|ref|YP_004807744.1|	-	1.4e-07	31.9	8.7	1.4e-07	31.9	8.7	3.9	3	2	0	3	3	2	1	4Fe-4S	dicluster	domain
Fer4_9	PF13187.6	gi|345004891|ref|YP_004807744.1|	-	1.3e-06	28.4	23.6	1.9e-06	27.9	6.9	4.1	3	2	0	3	3	3	2	4Fe-4S	dicluster	domain
Fer4_6	PF12837.7	gi|345004891|ref|YP_004807744.1|	-	2e-06	27.6	12.0	8.3e-05	22.5	2.3	3.7	4	0	0	4	4	3	2	4Fe-4S	binding	domain
Fer4_8	PF13183.6	gi|345004891|ref|YP_004807744.1|	-	4.4e-05	23.9	7.2	4.4e-05	23.9	7.2	3.6	3	0	0	3	3	3	1	4Fe-4S	dicluster	domain
Fer4	PF00037.27	gi|345004891|ref|YP_004807744.1|	-	4.8e-05	23.0	14.4	0.00081	19.1	3.0	4.0	4	0	0	4	4	4	2	4Fe-4S	binding	domain
Fer4_10	PF13237.6	gi|345004891|ref|YP_004807744.1|	-	9.4e-05	22.5	13.5	9.4e-05	22.5	13.5	4.1	4	2	1	5	5	3	2	4Fe-4S	dicluster	domain
Fer2	PF00111.27	gi|345004891|ref|YP_004807744.1|	-	0.00054	19.9	3.4	0.00054	19.9	3.4	2.5	2	1	0	2	2	2	1	2Fe-2S	iron-sulfur	cluster	binding	domain
Fer4_16	PF13484.6	gi|345004891|ref|YP_004807744.1|	-	0.0008	20.3	0.3	0.0008	20.3	0.3	3.9	4	1	1	5	5	4	1	4Fe-4S	double	cluster	binding	domain
Fer4_15	PF13459.6	gi|345004891|ref|YP_004807744.1|	-	0.0065	17.2	10.8	0.041	14.6	0.8	4.4	4	0	0	4	4	3	1	4Fe-4S	single	cluster	domain
Fer4_2	PF12797.7	gi|345004891|ref|YP_004807744.1|	-	0.016	15.3	2.3	0.016	15.3	2.3	4.7	5	0	0	5	5	4	0	4Fe-4S	binding	domain
Fer4_13	PF13370.6	gi|345004891|ref|YP_004807744.1|	-	0.094	13.3	17.1	0.91	10.1	3.7	3.8	3	0	0	3	3	3	0	4Fe-4S	single	cluster	domain	of	Ferredoxin	I
CDC48_N	PF02359.18	gi|345004891|ref|YP_004807744.1|	-	0.15	12.3	0.1	0.33	11.2	0.1	1.6	1	0	0	1	1	1	0	Cell	division	protein	48	(CDC48),	N-terminal	domain
DUF348	PF03990.14	gi|345004891|ref|YP_004807744.1|	-	0.64	9.8	4.0	0.52	10.1	1.5	2.1	2	0	0	2	2	2	0	G5-linked-Ubiquitin-like	domain
Fer4_18	PF13746.6	gi|345004891|ref|YP_004807744.1|	-	0.97	9.7	18.3	0.13	12.5	1.7	2.9	2	1	1	3	3	2	0	4Fe-4S	dicluster	domain
YyzF	PF14116.6	gi|345004891|ref|YP_004807744.1|	-	2.6	8.1	6.3	23	5.1	0.4	3.2	3	0	0	3	3	2	0	YyzF-like	protein
Fer4_22	PF17179.4	gi|345004891|ref|YP_004807744.1|	-	5.2	8.0	20.5	0.57	11.1	2.4	4.0	5	0	0	5	5	3	0	4Fe-4S	dicluster	domain
NADH_4Fe-4S	PF10589.9	gi|345004892|ref|YP_004807745.1|	-	1.6e-20	72.9	0.0	2.6e-20	72.3	0.0	1.4	1	0	0	1	1	1	1	NADH-ubiquinone	oxidoreductase-F	iron-sulfur	binding	region
Complex1_51K	PF01512.17	gi|345004892|ref|YP_004807745.1|	-	7.7e-17	61.6	0.0	1.1e-16	61.0	0.0	1.3	1	0	0	1	1	1	1	Respiratory-chain	NADH	dehydrogenase	51	Kd	subunit
SLBB	PF10531.9	gi|345004892|ref|YP_004807745.1|	-	0.00058	19.7	0.7	0.0021	17.9	0.0	2.3	2	0	0	2	2	2	1	SLBB	domain
NTP_transf_3	PF12804.7	gi|345004893|ref|YP_004807746.1|	-	9.3e-35	120.4	0.3	1.2e-34	119.9	0.3	1.1	1	0	0	1	1	1	1	MobA-like	NTP	transferase	domain
Polysacc_deac_1	PF01522.21	gi|345004895|ref|YP_004807748.1|	-	4.8e-21	74.9	0.0	6.7e-21	74.5	0.0	1.2	1	0	0	1	1	1	1	Polysaccharide	deacetylase
DUF2334	PF10096.9	gi|345004895|ref|YP_004807748.1|	-	0.0011	18.7	0.0	0.0015	18.2	0.0	1.4	1	0	0	1	1	1	1	Uncharacterized	protein	conserved	in	bacteria	(DUF2334)
Glyco_hydro_57	PF03065.15	gi|345004895|ref|YP_004807748.1|	-	0.17	11.1	0.0	0.22	10.7	0.0	1.1	1	0	0	1	1	1	0	Glycosyl	hydrolase	family	57
Proteasome	PF00227.26	gi|345004897|ref|YP_004807750.1|	-	2.6e-48	164.0	0.0	3.4e-48	163.7	0.0	1.1	1	0	0	1	1	1	1	Proteasome	subunit
Proteasome_A_N	PF10584.9	gi|345004897|ref|YP_004807750.1|	-	3.4e-12	45.8	0.1	5.7e-12	45.1	0.1	1.4	1	0	0	1	1	1	1	Proteasome	subunit	A	N-terminal	signature
Amidohydro_1	PF01979.20	gi|345004898|ref|YP_004807751.1|	-	8.2e-52	176.6	3.9	9.1e-52	176.5	3.9	1.0	1	0	0	1	1	1	1	Amidohydrolase	family
Amidohydro_3	PF07969.11	gi|345004898|ref|YP_004807751.1|	-	2.3e-16	60.4	14.2	3.9e-13	49.7	7.7	2.3	1	1	1	2	2	2	2	Amidohydrolase	family
Urease_alpha	PF00449.20	gi|345004898|ref|YP_004807751.1|	-	0.096	13.0	0.3	0.24	11.7	0.1	1.8	2	0	0	2	2	2	0	Urease	alpha-subunit,	N-terminal	domain
Ferritin_2	PF13668.6	gi|345004899|ref|YP_004807752.1|	-	2.1e-38	131.6	0.3	1.7e-37	128.6	0.7	1.9	2	0	0	2	2	2	1	Ferritin-like	domain
UCR_Fe-S_N	PF10399.9	gi|345004899|ref|YP_004807752.1|	-	0.11	11.9	0.1	0.27	10.6	0.1	1.7	1	0	0	1	1	1	0	Ubiquitinol-cytochrome	C	reductase	Fe-S	subunit	TAT	signal
Ferritin_2	PF13668.6	gi|345004900|ref|YP_004807753.1|	-	1.3e-37	129.0	2.1	1.7e-37	128.6	2.1	1.1	1	0	0	1	1	1	1	Ferritin-like	domain
DDE_Tnp_IS66	PF03050.14	gi|345004901|ref|YP_004807754.1|	-	4.4e-49	167.5	0.2	4.4e-49	167.5	0.2	1.9	2	0	0	2	2	2	1	Transposase	IS66	family
SlyX	PF04102.12	gi|345004901|ref|YP_004807754.1|	-	0.00015	22.3	5.5	0.00052	20.6	5.5	1.9	1	0	0	1	1	1	1	SlyX
MscS_porin	PF12795.7	gi|345004901|ref|YP_004807754.1|	-	0.0008	19.0	5.1	0.0008	19.0	5.1	1.8	2	0	0	2	2	2	1	Mechanosensitive	ion	channel	porin	domain
UPF0242	PF06785.11	gi|345004901|ref|YP_004807754.1|	-	0.0026	17.9	11.2	0.0048	17.0	11.2	1.4	1	0	0	1	1	1	1	Uncharacterised	protein	family	(UPF0242)	N-terminus
DUF16	PF01519.16	gi|345004901|ref|YP_004807754.1|	-	0.0029	18.1	5.6	0.0061	17.0	5.6	1.4	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF16
zf-IS66	PF13005.7	gi|345004901|ref|YP_004807754.1|	-	0.0036	17.7	3.7	0.0036	17.7	3.7	2.6	3	0	0	3	3	1	1	zinc-finger	binding	domain	of	transposase	IS66
HemX	PF04375.14	gi|345004901|ref|YP_004807754.1|	-	0.0046	16.3	2.5	0.0074	15.6	2.5	1.2	1	0	0	1	1	1	1	HemX,	putative	uroporphyrinogen-III	C-methyltransferase
Atg14	PF10186.9	gi|345004901|ref|YP_004807754.1|	-	0.006	15.7	4.1	0.01	15.0	4.1	1.3	1	0	0	1	1	1	1	Vacuolar	sorting	38	and	autophagy-related	subunit	14
SKA1	PF07160.12	gi|345004901|ref|YP_004807754.1|	-	0.0097	15.8	0.7	0.017	15.0	0.7	1.3	1	0	0	1	1	1	1	Spindle	and	kinetochore-associated	protein	1
YkyA	PF10368.9	gi|345004901|ref|YP_004807754.1|	-	0.021	14.5	6.4	0.037	13.7	6.4	1.2	1	0	0	1	1	1	0	Putative	cell-wall	binding	lipoprotein
ATG16	PF08614.11	gi|345004901|ref|YP_004807754.1|	-	0.027	14.7	7.0	0.027	14.7	7.0	2.1	3	0	0	3	3	1	0	Autophagy	protein	16	(ATG16)
HOOK	PF05622.12	gi|345004901|ref|YP_004807754.1|	-	0.03	12.5	6.0	0.044	11.9	6.0	1.1	1	0	0	1	1	1	0	HOOK	protein
DDE_Tnp_IS240	PF13610.6	gi|345004901|ref|YP_004807754.1|	-	0.037	14.3	3.3	0.43	10.8	0.0	2.6	2	1	0	2	2	2	0	DDE	domain
AAA_23	PF13476.6	gi|345004901|ref|YP_004807754.1|	-	0.037	14.5	4.7	0.08	13.4	4.7	1.5	1	0	0	1	1	1	0	AAA	domain
Noelin-1	PF12308.8	gi|345004901|ref|YP_004807754.1|	-	0.042	13.8	2.0	0.085	12.9	0.9	1.9	2	0	0	2	2	2	0	Neurogenesis	glycoprotein
Phage_Mu_Gam	PF07352.12	gi|345004901|ref|YP_004807754.1|	-	0.048	13.6	4.8	0.087	12.7	4.8	1.4	1	0	0	1	1	1	0	Bacteriophage	Mu	Gam	like	protein
DUF3584	PF12128.8	gi|345004901|ref|YP_004807754.1|	-	0.059	10.9	6.5	0.088	10.3	6.5	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3584)
XhlA	PF10779.9	gi|345004901|ref|YP_004807754.1|	-	0.062	13.5	8.4	0.15	12.3	8.4	1.7	1	0	0	1	1	1	0	Haemolysin	XhlA
TMPIT	PF07851.13	gi|345004901|ref|YP_004807754.1|	-	0.077	12.2	3.2	0.12	11.6	3.2	1.2	1	0	0	1	1	1	0	TMPIT-like	protein
Phage_HK97_TLTM	PF06120.11	gi|345004901|ref|YP_004807754.1|	-	0.094	11.9	1.1	0.15	11.3	1.1	1.2	1	0	0	1	1	1	0	Tail	length	tape	measure	protein
Exonuc_VII_L	PF02601.15	gi|345004901|ref|YP_004807754.1|	-	0.1	12.1	1.3	0.24	10.9	1.3	1.5	1	0	0	1	1	1	0	Exonuclease	VII,	large	subunit
Fmp27_WPPW	PF10359.9	gi|345004901|ref|YP_004807754.1|	-	0.11	11.3	2.2	0.17	10.7	2.2	1.2	1	0	0	1	1	1	0	RNA	pol	II	promoter	Fmp27	protein	domain
DUF1664	PF07889.12	gi|345004901|ref|YP_004807754.1|	-	0.11	12.5	2.0	0.21	11.7	2.0	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1664)
FPP	PF05911.11	gi|345004901|ref|YP_004807754.1|	-	0.11	10.6	5.4	0.15	10.2	5.4	1.1	1	0	0	1	1	1	0	Filament-like	plant	protein,	long	coiled-coil
HSBP1	PF06825.12	gi|345004901|ref|YP_004807754.1|	-	0.18	11.7	5.5	0.45	10.4	1.1	2.4	1	1	0	2	2	2	0	Heat	shock	factor	binding	protein	1
DUF4446	PF14584.6	gi|345004901|ref|YP_004807754.1|	-	0.19	11.7	2.9	0.34	10.9	2.9	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF4446)
BST2	PF16716.5	gi|345004901|ref|YP_004807754.1|	-	0.26	11.9	6.2	0.68	10.5	6.2	1.7	1	0	0	1	1	1	0	Bone	marrow	stromal	antigen	2
FlaC_arch	PF05377.11	gi|345004901|ref|YP_004807754.1|	-	0.31	11.5	7.4	0.72	10.3	7.4	1.6	1	0	0	1	1	1	0	Flagella	accessory	protein	C	(FlaC)
FliS	PF02561.14	gi|345004901|ref|YP_004807754.1|	-	0.37	11.1	3.1	3.2	8.0	0.6	2.4	2	0	0	2	2	2	0	Flagellar	protein	FliS
AAA_13	PF13166.6	gi|345004901|ref|YP_004807754.1|	-	0.84	8.2	4.7	1.2	7.6	4.7	1.1	1	0	0	1	1	1	0	AAA	domain
ATP-synt_E	PF05680.12	gi|345004901|ref|YP_004807754.1|	-	0.87	10.0	4.7	2.7	8.4	4.7	1.9	1	0	0	1	1	1	0	ATP	synthase	E	chain
Fzo_mitofusin	PF04799.13	gi|345004901|ref|YP_004807754.1|	-	0.88	9.1	3.3	1.6	8.2	3.3	1.3	1	0	0	1	1	1	0	fzo-like	conserved	region
Synaptobrevin	PF00957.21	gi|345004901|ref|YP_004807754.1|	-	1.9	8.3	3.4	3.9	7.3	3.4	1.4	1	0	0	1	1	1	0	Synaptobrevin
PKcGMP_CC	PF16808.5	gi|345004901|ref|YP_004807754.1|	-	2	8.3	20.5	2.9	7.8	13.4	2.9	1	1	1	2	2	2	0	Coiled-coil	N-terminus	of	cGMP-dependent	protein	kinase
UPF0449	PF15136.6	gi|345004901|ref|YP_004807754.1|	-	2.9	8.4	10.9	14	6.3	5.1	2.8	2	0	0	2	2	2	0	Uncharacterised	protein	family	UPF0449
Spc7	PF08317.11	gi|345004901|ref|YP_004807754.1|	-	3.7	6.3	14.0	0.086	11.7	6.7	1.8	2	0	0	2	2	2	0	Spc7	kinetochore	protein
TMF_DNA_bd	PF12329.8	gi|345004901|ref|YP_004807754.1|	-	5.3	7.1	15.6	0.74	9.8	11.5	1.7	2	0	0	2	2	1	0	TATA	element	modulatory	factor	1	DNA	binding
FemAB	PF02388.16	gi|345004901|ref|YP_004807754.1|	-	5.4	5.8	6.3	8.1	5.2	6.3	1.1	1	0	0	1	1	1	0	FemAB	family
DUF3552	PF12072.8	gi|345004901|ref|YP_004807754.1|	-	5.5	6.4	21.2	0.04	13.3	11.5	2.0	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF3552)
DUF5446	PF17522.2	gi|345004901|ref|YP_004807754.1|	-	6.6	7.0	12.0	23	5.3	12.0	1.9	1	0	0	1	1	1	0	Family	of	unknown	function	(DUF5446)
Med9	PF07544.13	gi|345004901|ref|YP_004807754.1|	-	6.6	6.9	12.5	45	4.2	12.5	2.3	1	1	0	1	1	1	0	RNA	polymerase	II	transcription	mediator	complex	subunit	9
DUF2545	PF10810.8	gi|345004902|ref|YP_004807755.1|	-	0.07	13.3	1.5	0.096	12.8	1.5	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2545)
DUF3043	PF11241.8	gi|345004902|ref|YP_004807755.1|	-	0.31	11.0	0.8	0.42	10.6	0.5	1.3	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF3043)
DUF3302	PF11742.8	gi|345004903|ref|YP_004807756.1|	-	0.044	13.9	0.2	0.044	13.9	0.2	2.3	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF3302)
DUF2206	PF09971.9	gi|345004903|ref|YP_004807756.1|	-	5.8	5.6	7.3	0.8	8.4	3.0	1.6	1	1	1	2	2	2	0	Predicted	membrane	protein	(DUF2206)
zinc_ribbon_2	PF13240.6	gi|345004905|ref|YP_004807758.1|	-	0.0026	17.4	0.1	0.004	16.8	0.1	1.3	1	0	0	1	1	1	1	zinc-ribbon	domain
zf-Di19	PF05605.12	gi|345004905|ref|YP_004807758.1|	-	0.0091	16.3	1.1	0.01	16.1	0.4	1.4	2	0	0	2	2	2	1	Drought	induced	19	protein	(Di19),	zinc-binding
zf-C2H2_4	PF13894.6	gi|345004905|ref|YP_004807758.1|	-	0.015	16.1	0.9	0.032	15.1	0.6	1.6	2	0	0	2	2	2	0	C2H2-type	zinc	finger
Rad50_zn_hook	PF04423.14	gi|345004905|ref|YP_004807758.1|	-	0.024	14.5	0.0	0.044	13.6	0.0	1.4	1	0	0	1	1	1	0	Rad50	zinc	hook	motif
DZR	PF12773.7	gi|345004905|ref|YP_004807758.1|	-	0.054	13.5	0.0	0.064	13.3	0.0	1.2	1	0	0	1	1	1	0	Double	zinc	ribbon
zf-ribbon_3	PF13248.6	gi|345004905|ref|YP_004807758.1|	-	0.058	12.8	0.1	0.1	12.1	0.1	1.4	1	0	0	1	1	1	0	zinc-ribbon	domain
COX4_pro	PF03626.14	gi|345004906|ref|YP_004807759.1|	-	1.4e-11	44.6	11.3	1.7e-11	44.4	11.3	1.1	1	0	0	1	1	1	1	Prokaryotic	Cytochrome	C	oxidase	subunit	IV
DUF4131	PF13567.6	gi|345004906|ref|YP_004807759.1|	-	2.3	7.9	6.8	0.73	9.5	3.9	1.6	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4131)
COX1	PF00115.20	gi|345004907|ref|YP_004807760.1|	-	6.1e-128	427.4	76.1	6.1e-128	427.4	76.1	2.8	2	1	0	2	2	2	1	Cytochrome	C	and	Quinol	oxidase	polypeptide	I
COX3	PF00510.18	gi|345004907|ref|YP_004807760.1|	-	2.3e-20	73.5	17.4	2.3e-20	73.5	17.4	3.6	3	2	0	3	3	3	1	Cytochrome	c	oxidase	subunit	III
COX2	PF00116.20	gi|345004908|ref|YP_004807761.1|	-	1.1e-16	60.8	0.0	3.9e-16	59.0	0.0	1.7	1	1	1	2	2	2	1	Cytochrome	C	oxidase	subunit	II,	periplasmic	domain
AFOR_C	PF01314.18	gi|345004909|ref|YP_004807762.1|	-	3.1e-70	237.1	0.5	5.8e-70	236.2	0.5	1.4	1	0	0	1	1	1	1	Aldehyde	ferredoxin	oxidoreductase,	domains	2	&	3
AFOR_N	PF02730.15	gi|345004909|ref|YP_004807762.1|	-	1.1e-53	182.0	0.0	1.9e-53	181.3	0.0	1.4	1	0	0	1	1	1	1	Aldehyde	ferredoxin	oxidoreductase,	N-terminal	domain
ThiS	PF02597.20	gi|345004910|ref|YP_004807763.1|	-	9.4e-11	42.2	0.1	1.1e-10	42.0	0.1	1.1	1	0	0	1	1	1	1	ThiS	family
TGS	PF02824.21	gi|345004910|ref|YP_004807763.1|	-	0.0059	16.6	0.4	0.01	15.9	0.4	1.6	1	1	0	1	1	1	1	TGS	domain
MMR_HSR1_C	PF08438.10	gi|345004911|ref|YP_004807764.1|	-	1e-28	100.1	0.0	1.7e-28	99.4	0.0	1.3	1	0	0	1	1	1	1	GTPase	of	unknown	function	C-terminal
MMR_HSR1	PF01926.23	gi|345004911|ref|YP_004807764.1|	-	2.2e-21	76.0	0.0	2.5e-20	72.7	0.0	2.3	2	0	0	2	2	2	1	50S	ribosome-binding	GTPase
TGS	PF02824.21	gi|345004911|ref|YP_004807764.1|	-	9.7e-12	44.8	0.1	5.1e-11	42.4	0.0	2.1	2	0	0	2	2	2	1	TGS	domain
FeoB_N	PF02421.18	gi|345004911|ref|YP_004807764.1|	-	9.1e-07	28.5	0.0	6.7e-05	22.5	0.0	2.6	3	0	0	3	3	3	1	Ferrous	iron	transport	protein	B
GTP_EFTU	PF00009.27	gi|345004911|ref|YP_004807764.1|	-	0.0034	16.9	0.0	0.022	14.3	0.0	2.1	2	0	0	2	2	2	1	Elongation	factor	Tu	GTP	binding	domain
MeaB	PF03308.16	gi|345004911|ref|YP_004807764.1|	-	0.053	12.5	0.0	0.11	11.5	0.0	1.5	1	0	0	1	1	1	0	Methylmalonyl	Co-A	mutase-associated	GTPase	MeaB
RsgA_GTPase	PF03193.16	gi|345004911|ref|YP_004807764.1|	-	0.058	13.3	0.1	14	5.5	0.0	2.3	2	0	0	2	2	2	0	RsgA	GTPase
DUF498	PF04430.14	gi|345004911|ref|YP_004807764.1|	-	0.078	13.0	0.2	0.24	11.5	0.2	1.8	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF498/DUF598)
Roc	PF08477.13	gi|345004911|ref|YP_004807764.1|	-	0.11	12.7	0.0	1.1	9.4	0.0	2.3	2	0	0	2	2	2	0	Ras	of	Complex,	Roc,	domain	of	DAPkinase
Dynamin_N	PF00350.23	gi|345004911|ref|YP_004807764.1|	-	0.12	12.5	0.1	1.6	8.7	0.0	2.5	3	0	0	3	3	3	0	Dynamin	family
Arf	PF00025.21	gi|345004911|ref|YP_004807764.1|	-	0.14	11.6	0.0	5.6	6.4	0.0	2.8	3	0	0	3	3	3	0	ADP-ribosylation	factor	family
DUF835	PF05763.12	gi|345004913|ref|YP_004807766.1|	-	0.012	15.3	0.0	0.02	14.6	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF835)
TBP	PF00352.21	gi|345004914|ref|YP_004807767.1|	-	4.9e-59	196.3	0.0	2.8e-28	97.7	0.0	2.0	2	0	0	2	2	2	2	Transcription	factor	TFIID	(or	TATA-binding	protein,	TBP)
DUF3378	PF11858.8	gi|345004914|ref|YP_004807767.1|	-	5e-07	29.8	0.0	0.00098	19.2	0.0	2.2	2	0	0	2	2	2	2	Domain	of	unknown	function	(DUF3378)
Goodbye	PF17109.5	gi|345004914|ref|YP_004807767.1|	-	0.018	15.5	0.0	4.3	7.8	0.0	2.2	2	0	0	2	2	2	0	fungal	STAND	N-terminal	Goodbye	domain
DUF218	PF02698.17	gi|345004914|ref|YP_004807767.1|	-	0.039	14.0	0.0	0.63	10.1	0.0	2.0	1	1	1	2	2	2	0	DUF218	domain
ATP-gua_Ptrans	PF00217.19	gi|345004914|ref|YP_004807767.1|	-	0.096	12.2	0.0	0.22	10.9	0.0	1.6	2	0	0	2	2	2	0	ATP:guanido	phosphotransferase,	C-terminal	catalytic	domain
PucR	PF07905.11	gi|345004914|ref|YP_004807767.1|	-	0.1	12.9	0.0	3.7	7.9	0.0	2.4	2	0	0	2	2	2	0	Purine	catabolism	regulatory	protein-like	family
DUF4258	PF14076.6	gi|345004915|ref|YP_004807768.1|	-	0.0042	17.4	0.0	0.0069	16.7	0.0	1.4	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4258)
ERCC3_RAD25_C	PF16203.5	gi|345004916|ref|YP_004807769.1|	-	6.8e-25	87.7	0.0	1e-24	87.1	0.0	1.2	1	0	0	1	1	1	1	ERCC3/RAD25/XPB	C-terminal	helicase
ResIII	PF04851.15	gi|345004916|ref|YP_004807769.1|	-	2.9e-15	56.7	0.0	4.8e-15	56.0	0.0	1.4	1	0	0	1	1	1	1	Type	III	restriction	enzyme,	res	subunit
SNF2_N	PF00176.23	gi|345004916|ref|YP_004807769.1|	-	6.3e-14	51.5	0.0	8.3e-14	51.1	0.0	1.2	1	0	0	1	1	1	1	SNF2	family	N-terminal	domain
Helicase_C	PF00271.31	gi|345004916|ref|YP_004807769.1|	-	4.5e-13	49.5	0.0	3.6e-12	46.6	0.0	2.1	2	0	0	2	2	2	1	Helicase	conserved	C-terminal	domain
DEAD	PF00270.29	gi|345004916|ref|YP_004807769.1|	-	1.3e-06	28.3	0.0	2.7e-06	27.3	0.0	1.5	1	0	0	1	1	1	1	DEAD/DEAH	box	helicase
MarR_2	PF12802.7	gi|345004916|ref|YP_004807769.1|	-	4e-05	23.4	1.0	0.00011	22.1	1.0	1.7	1	0	0	1	1	1	1	MarR	family
HTH_20	PF12840.7	gi|345004916|ref|YP_004807769.1|	-	0.00028	20.9	1.3	0.00064	19.7	0.2	2.2	2	0	0	2	2	2	1	Helix-turn-helix	domain
TrmB	PF01978.19	gi|345004916|ref|YP_004807769.1|	-	0.00035	20.4	0.0	0.00099	19.0	0.0	1.7	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
AAA_22	PF13401.6	gi|345004916|ref|YP_004807769.1|	-	0.005	17.1	0.2	0.059	13.6	0.2	2.5	1	1	0	1	1	1	1	AAA	domain
AAA_30	PF13604.6	gi|345004916|ref|YP_004807769.1|	-	0.0096	15.7	0.3	0.024	14.3	0.0	1.8	2	0	0	2	2	2	1	AAA	domain
AAA_25	PF13481.6	gi|345004916|ref|YP_004807769.1|	-	0.015	14.9	2.1	0.03	13.9	0.2	2.6	2	1	0	2	2	2	0	AAA	domain
AAA_11	PF13086.6	gi|345004916|ref|YP_004807769.1|	-	0.043	13.6	0.0	0.09	12.6	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
DUF2075	PF09848.9	gi|345004916|ref|YP_004807769.1|	-	0.044	13.0	0.0	0.067	12.4	0.0	1.2	1	0	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2075)
SWI2_SNF2	PF18766.1	gi|345004916|ref|YP_004807769.1|	-	0.056	13.1	0.0	0.11	12.1	0.0	1.5	1	0	0	1	1	1	0	SWI2/SNF2	ATPase
HTH_27	PF13463.6	gi|345004916|ref|YP_004807769.1|	-	0.086	13.3	0.0	0.24	11.9	0.0	1.8	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
AAA	PF00004.29	gi|345004916|ref|YP_004807769.1|	-	0.088	13.2	0.0	0.3	11.5	0.0	1.9	2	0	0	2	2	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
HTH_IclR	PF09339.10	gi|345004916|ref|YP_004807769.1|	-	0.11	12.3	0.2	0.27	11.1	0.2	1.7	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
Fe_dep_repress	PF01325.19	gi|345004916|ref|YP_004807769.1|	-	0.12	12.6	0.0	0.27	11.5	0.0	1.5	1	0	0	1	1	1	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
IstB_IS21	PF01695.17	gi|345004916|ref|YP_004807769.1|	-	0.13	12.0	0.0	0.6	9.8	0.0	2.0	2	0	0	2	2	2	0	IstB-like	ATP	binding	protein
DUF5635	PF18685.1	gi|345004916|ref|YP_004807769.1|	-	0.17	11.8	0.0	0.42	10.6	0.0	1.6	1	0	0	1	1	1	0	Family	of	unknown	function	(DUF5635)
Amidase	PF01425.21	gi|345004917|ref|YP_004807770.1|	-	5.8e-108	361.7	0.3	7.1e-108	361.4	0.3	1.0	1	0	0	1	1	1	1	Amidase
Peptidase_M28	PF04389.17	gi|345004918|ref|YP_004807771.1|	-	9e-17	61.4	0.2	1.7e-16	60.5	0.2	1.4	1	0	0	1	1	1	1	Peptidase	family	M28
Peptidase_M20	PF01546.28	gi|345004918|ref|YP_004807771.1|	-	0.00024	20.9	0.0	0.00091	19.0	0.0	1.8	1	1	1	2	2	2	1	Peptidase	family	M20/M25/M40
SBP_bac_5	PF00496.22	gi|345004919|ref|YP_004807772.1|	-	7.9e-65	219.2	1.0	1.1e-64	218.8	1.0	1.2	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	proteins,	family	5	Middle
TAT_signal	PF10518.9	gi|345004919|ref|YP_004807772.1|	-	0.037	13.9	2.1	0.067	13.1	2.1	1.4	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
BPD_transp_1	PF00528.22	gi|345004920|ref|YP_004807773.1|	-	8e-42	143.1	10.0	8e-42	143.1	10.0	1.7	2	1	0	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
Phage_CII	PF05269.11	gi|345004920|ref|YP_004807773.1|	-	0.13	12.5	0.0	0.28	11.4	0.0	1.5	1	0	0	1	1	1	0	Bacteriophage	CII	protein
Trep_Strep	PF09605.10	gi|345004920|ref|YP_004807773.1|	-	2.3	8.1	10.8	0.62	10.0	0.8	3.0	4	0	0	4	4	4	0	Hypothetical	bacterial	integral	membrane	protein	(Trep_Strep)
SieB	PF14163.6	gi|345004920|ref|YP_004807773.1|	-	2.6	7.5	5.5	1.5	8.3	1.1	2.4	2	1	1	3	3	3	0	Super-infection	exclusion	protein	B
BPD_transp_1	PF00528.22	gi|345004921|ref|YP_004807774.1|	-	3.1e-32	111.8	10.0	3.1e-32	111.8	10.0	1.8	2	0	0	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
OppC_N	PF12911.7	gi|345004921|ref|YP_004807774.1|	-	0.0094	15.9	0.1	0.0094	15.9	0.1	3.3	3	1	0	3	3	3	1	N-terminal	TM	domain	of	oligopeptide	transport	permease	C
DUF2633	PF11119.8	gi|345004921|ref|YP_004807774.1|	-	0.38	10.7	1.3	4.3	7.3	0.5	2.5	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF2633)
ABC_tran	PF00005.27	gi|345004922|ref|YP_004807775.1|	-	4.3e-24	85.6	0.0	6.7e-24	85.0	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
oligo_HPY	PF08352.12	gi|345004922|ref|YP_004807775.1|	-	1e-18	67.6	0.3	1.9e-18	66.7	0.3	1.5	1	0	0	1	1	1	1	Oligopeptide/dipeptide	transporter,	C-terminal	region
AAA_21	PF13304.6	gi|345004922|ref|YP_004807775.1|	-	4.6e-05	23.4	0.0	0.012	15.4	0.0	2.1	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_29	PF13555.6	gi|345004922|ref|YP_004807775.1|	-	0.078	12.7	0.1	0.17	11.7	0.1	1.5	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
AAA_16	PF13191.6	gi|345004922|ref|YP_004807775.1|	-	0.1	13.0	0.0	0.17	12.2	0.0	1.5	1	0	0	1	1	1	0	AAA	ATPase	domain
AAA_22	PF13401.6	gi|345004922|ref|YP_004807775.1|	-	0.14	12.4	0.0	2.9	8.2	0.0	2.3	2	0	0	2	2	2	0	AAA	domain
AAA_7	PF12775.7	gi|345004922|ref|YP_004807775.1|	-	0.15	11.5	0.0	0.27	10.7	0.0	1.3	1	0	0	1	1	1	0	P-loop	containing	dynein	motor	region
ABC_tran	PF00005.27	gi|345004923|ref|YP_004807776.1|	-	5.6e-33	114.4	0.0	2e-32	112.6	0.0	1.8	2	0	0	2	2	2	1	ABC	transporter
oligo_HPY	PF08352.12	gi|345004923|ref|YP_004807776.1|	-	2.6e-15	56.7	0.1	5.5e-15	55.6	0.1	1.5	1	0	0	1	1	1	1	Oligopeptide/dipeptide	transporter,	C-terminal	region
AAA_21	PF13304.6	gi|345004923|ref|YP_004807776.1|	-	6.2e-06	26.2	0.3	0.0081	16.0	0.0	2.3	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|345004923|ref|YP_004807776.1|	-	2.9e-05	23.6	0.0	0.00012	21.6	0.0	1.9	2	0	0	2	2	2	1	RecF/RecN/SMC	N	terminal	domain
AAA_22	PF13401.6	gi|345004923|ref|YP_004807776.1|	-	5.8e-05	23.4	0.9	0.00078	19.7	0.9	2.3	1	1	0	1	1	1	1	AAA	domain
AAA_16	PF13191.6	gi|345004923|ref|YP_004807776.1|	-	0.001	19.4	0.8	0.001	19.4	0.8	2.2	2	1	0	2	2	2	1	AAA	ATPase	domain
AAA_29	PF13555.6	gi|345004923|ref|YP_004807776.1|	-	0.0066	16.2	0.0	0.013	15.3	0.0	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA	PF00004.29	gi|345004923|ref|YP_004807776.1|	-	0.0089	16.5	0.0	0.15	12.5	0.0	2.2	2	0	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
ATP-synt_ab	PF00006.25	gi|345004923|ref|YP_004807776.1|	-	0.022	14.4	0.0	0.022	14.4	0.0	1.2	1	0	0	1	1	1	0	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
RsgA_GTPase	PF03193.16	gi|345004923|ref|YP_004807776.1|	-	0.029	14.3	0.0	0.053	13.4	0.0	1.4	1	0	0	1	1	1	0	RsgA	GTPase
AAA_5	PF07728.14	gi|345004923|ref|YP_004807776.1|	-	0.056	13.4	0.1	0.16	12.0	0.1	1.8	1	0	0	1	1	1	0	AAA	domain	(dynein-related	subfamily)
NB-ARC	PF00931.22	gi|345004923|ref|YP_004807776.1|	-	0.12	11.6	0.1	0.26	10.5	0.0	1.5	2	0	0	2	2	2	0	NB-ARC	domain
DoxX	PF07681.12	gi|345004924|ref|YP_004807777.1|	-	4.8e-09	36.7	1.0	4.8e-09	36.7	1.0	1.4	2	0	0	2	2	2	1	DoxX
SURF4	PF02077.15	gi|345004924|ref|YP_004807777.1|	-	0.0022	17.6	0.0	0.0028	17.3	0.0	1.1	1	0	0	1	1	1	1	SURF4	family
HR_lesion	PF05514.11	gi|345004924|ref|YP_004807777.1|	-	0.14	12.3	0.0	0.46	10.7	0.0	1.7	1	1	1	2	2	2	0	HR-like	lesion-inducing
Acetyltransf_1	PF00583.25	gi|345004925|ref|YP_004807778.1|	-	1.4e-13	51.1	0.2	1.6e-13	50.9	0.2	1.1	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_10	PF13673.7	gi|345004925|ref|YP_004807778.1|	-	0.00011	22.2	0.0	0.00013	21.9	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_7	PF13508.7	gi|345004925|ref|YP_004807778.1|	-	0.00017	21.9	0.0	0.00024	21.5	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
DnaA_N	PF11638.8	gi|345004925|ref|YP_004807778.1|	-	0.038	13.7	0.0	0.36	10.6	0.0	2.1	2	0	0	2	2	2	0	DnaA	N-terminal	domain
Acetyltransf_9	PF13527.7	gi|345004925|ref|YP_004807778.1|	-	0.044	13.9	0.0	0.064	13.3	0.0	1.3	1	0	0	1	1	1	0	Acetyltransferase	(GNAT)	domain
EamA	PF00892.20	gi|345004926|ref|YP_004807779.1|	-	1.8e-33	115.6	27.8	2.6e-17	63.3	10.8	2.0	2	0	0	2	2	2	2	EamA-like	transporter	family
Caroten_synth	PF04240.12	gi|345004927|ref|YP_004807780.1|	-	3.6e-13	49.9	23.7	4.5e-13	49.6	23.7	1.1	1	0	0	1	1	1	1	Carotenoid	biosynthesis	protein
Polyketide_cyc	PF03364.20	gi|345004928|ref|YP_004807781.1|	-	5.1e-08	33.2	0.0	6.6e-08	32.8	0.0	1.1	1	0	0	1	1	1	1	Polyketide	cyclase	/	dehydrase	and	lipid	transport
Polyketide_cyc2	PF10604.9	gi|345004928|ref|YP_004807781.1|	-	9.6e-05	22.7	0.1	0.00011	22.4	0.1	1.1	1	0	0	1	1	1	1	Polyketide	cyclase	/	dehydrase	and	lipid	transport
Ntox8	PF15545.6	gi|345004929|ref|YP_004807782.1|	-	0.18	11.9	0.0	0.25	11.5	0.0	1.2	1	0	0	1	1	1	0	Bacterial	toxin	8
zinc_ribbon_2	PF13240.6	gi|345004930|ref|YP_004807783.1|	-	0.0042	16.8	0.0	0.5	10.1	0.0	2.2	2	0	0	2	2	2	1	zinc-ribbon	domain
zf-IS66	PF13005.7	gi|345004930|ref|YP_004807783.1|	-	0.0066	16.8	1.2	0.023	15.1	0.3	2.0	2	0	0	2	2	2	1	zinc-finger	binding	domain	of	transposase	IS66
Nudix_N_2	PF14803.6	gi|345004930|ref|YP_004807783.1|	-	0.027	14.4	0.3	0.25	11.3	0.1	2.1	2	0	0	2	2	2	0	Nudix	N-terminal
DNA_ligase_ZBD	PF03119.16	gi|345004930|ref|YP_004807783.1|	-	0.029	14.4	0.4	0.077	13.0	0.1	1.9	2	0	0	2	2	2	0	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
zf-ribbon_3	PF13248.6	gi|345004930|ref|YP_004807783.1|	-	0.061	12.8	0.2	0.54	9.8	0.1	2.1	2	0	0	2	2	2	0	zinc-ribbon	domain
DZR	PF12773.7	gi|345004930|ref|YP_004807783.1|	-	0.077	13.0	0.0	0.16	12.0	0.0	1.6	1	1	0	1	1	1	0	Double	zinc	ribbon
Zn-ribbon_8	PF09723.10	gi|345004930|ref|YP_004807783.1|	-	0.11	12.6	1.3	0.46	10.6	1.3	1.9	1	1	0	1	1	1	0	Zinc	ribbon	domain
zinc-ribbons_6	PF07191.12	gi|345004930|ref|YP_004807783.1|	-	0.12	12.3	0.1	0.2	11.7	0.1	1.5	1	1	0	1	1	1	0	zinc-ribbons
EF-1_beta_acid	PF10587.9	gi|345004931|ref|YP_004807784.1|	-	1.2	9.7	6.8	2.8	8.4	2.1	2.6	2	0	0	2	2	2	0	Eukaryotic	elongation	factor	1	beta	central	acidic	region
Proteasome	PF00227.26	gi|345004933|ref|YP_004807786.1|	-	2.1e-46	157.8	1.5	2.5e-46	157.6	1.5	1.0	1	0	0	1	1	1	1	Proteasome	subunit
FG-GAP	PF01839.23	gi|345004934|ref|YP_004807787.1|	-	0.13	12.5	3.6	46	4.3	0.0	3.8	3	0	0	3	3	3	0	FG-GAP	repeat
DUF348	PF03990.14	gi|345004934|ref|YP_004807787.1|	-	0.24	11.2	1.8	0.36	10.6	0.0	2.2	2	0	0	2	2	2	0	G5-linked-Ubiquitin-like	domain
DNA_ligase_A_M	PF01068.21	gi|345004935|ref|YP_004807788.1|	-	4e-38	131.1	0.0	6.2e-37	127.2	0.0	2.1	1	1	0	1	1	1	1	ATP	dependent	DNA	ligase	domain
DNA_ligase_A_N	PF04675.14	gi|345004935|ref|YP_004807788.1|	-	2.8e-31	109.2	0.0	4.3e-31	108.6	0.0	1.3	1	0	0	1	1	1	1	DNA	ligase	N	terminus
DNA_ligase_A_C	PF04679.15	gi|345004935|ref|YP_004807788.1|	-	5.8e-20	71.7	0.0	1.9e-19	70.1	0.0	2.0	1	0	0	1	1	1	1	ATP	dependent	DNA	ligase	C	terminal	region
DNA_ligase_OB_2	PF14743.6	gi|345004935|ref|YP_004807788.1|	-	0.077	13.0	0.1	0.46	10.6	0.1	2.1	1	1	0	1	1	1	0	DNA	ligase	OB-like	domain
Lactamase_B_3	PF13483.6	gi|345004936|ref|YP_004807789.1|	-	2.2e-26	92.7	0.0	3.7e-26	92.0	0.0	1.4	1	1	0	1	1	1	1	Beta-lactamase	superfamily	domain
Lactamase_B_2	PF12706.7	gi|345004936|ref|YP_004807789.1|	-	0.00047	19.7	0.4	0.003	17.1	0.4	2.2	1	1	0	1	1	1	1	Beta-lactamase	superfamily	domain
HrcA_DNA-bdg	PF03444.15	gi|345004937|ref|YP_004807790.1|	-	1.7e-35	120.5	0.1	2.3e-35	120.1	0.1	1.2	1	0	0	1	1	1	1	Winged	helix-turn-helix	transcription	repressor,	HrcA	DNA-binding
Rrf2	PF02082.20	gi|345004937|ref|YP_004807790.1|	-	5.6e-08	33.0	0.1	9.4e-08	32.3	0.1	1.3	1	0	0	1	1	1	1	Transcriptional	regulator
HTH_11	PF08279.12	gi|345004937|ref|YP_004807790.1|	-	8.2e-06	25.7	0.0	1.4e-05	24.9	0.0	1.4	1	0	0	1	1	1	1	HTH	domain
TrmB	PF01978.19	gi|345004937|ref|YP_004807790.1|	-	0.0087	15.9	0.0	0.02	14.7	0.0	1.7	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_24	PF13412.6	gi|345004937|ref|YP_004807790.1|	-	0.057	13.0	0.1	0.28	10.8	0.1	2.0	1	1	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
HTH_20	PF12840.7	gi|345004937|ref|YP_004807790.1|	-	0.071	13.2	0.0	0.13	12.4	0.0	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_38	PF13936.6	gi|345004937|ref|YP_004807790.1|	-	0.077	12.8	0.0	0.15	11.9	0.0	1.6	1	1	0	1	1	1	0	Helix-turn-helix	domain
MarR_2	PF12802.7	gi|345004937|ref|YP_004807790.1|	-	0.089	12.7	0.0	0.15	11.9	0.0	1.4	1	0	0	1	1	1	0	MarR	family
Epimerase	PF01370.21	gi|345004938|ref|YP_004807791.1|	-	3e-41	141.5	0.0	3.6e-41	141.2	0.0	1.1	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
GDP_Man_Dehyd	PF16363.5	gi|345004938|ref|YP_004807791.1|	-	2.1e-38	132.6	0.1	8.3e-38	130.6	0.1	1.8	1	1	0	1	1	1	1	GDP-mannose	4,6	dehydratase
RmlD_sub_bind	PF04321.17	gi|345004938|ref|YP_004807791.1|	-	9e-11	41.4	0.0	1.4e-10	40.8	0.0	1.2	1	0	0	1	1	1	1	RmlD	substrate	binding	domain
3Beta_HSD	PF01073.19	gi|345004938|ref|YP_004807791.1|	-	1.2e-10	40.9	0.0	1.9e-10	40.2	0.0	1.3	1	0	0	1	1	1	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
Polysacc_synt_2	PF02719.15	gi|345004938|ref|YP_004807791.1|	-	6e-10	38.7	0.1	7e-07	28.7	0.0	2.3	2	0	0	2	2	2	2	Polysaccharide	biosynthesis	protein
NAD_binding_4	PF07993.12	gi|345004938|ref|YP_004807791.1|	-	8.5e-06	25.1	0.0	0.0016	17.7	0.0	2.1	2	0	0	2	2	2	2	Male	sterility	protein
KR	PF08659.10	gi|345004938|ref|YP_004807791.1|	-	0.039	13.9	0.1	2.3	8.1	0.0	2.2	2	0	0	2	2	2	0	KR	domain
adh_short	PF00106.25	gi|345004938|ref|YP_004807791.1|	-	0.13	11.7	0.1	2.3	7.6	0.0	2.2	1	1	1	2	2	2	0	short	chain	dehydrogenase
RNase_H_2	PF13482.6	gi|345004942|ref|YP_004807795.1|	-	5.9e-34	117.5	0.0	7.6e-34	117.1	0.0	1.1	1	0	0	1	1	1	1	RNase_H	superfamily
DNA_pol_A_exo1	PF01612.20	gi|345004942|ref|YP_004807795.1|	-	0.00074	19.3	0.0	0.0012	18.6	0.0	1.3	1	1	0	1	1	1	1	3'-5'	exonuclease
DNA_pol_B_exo2	PF10108.9	gi|345004942|ref|YP_004807795.1|	-	0.046	13.4	0.1	0.31	10.7	0.0	2.0	1	1	1	2	2	2	0	Predicted	3'-5'	exonuclease	related	to	the	exonuclease	domain	of	PolB
DUF2025	PF09634.10	gi|345004942|ref|YP_004807795.1|	-	0.12	12.4	0.1	0.36	10.9	0.0	1.8	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2025)
Bactofilin	PF04519.13	gi|345004944|ref|YP_004807797.1|	-	5.5e-14	52.2	9.6	2.4e-10	40.6	1.4	3.3	2	2	0	2	2	2	2	Polymer-forming	cytoskeletal
Hexapep	PF00132.24	gi|345004944|ref|YP_004807797.1|	-	1.9e-06	27.3	5.4	0.043	13.5	0.0	5.3	4	1	1	5	5	5	3	Bacterial	transferase	hexapeptide	(six	repeats)
DUF3494	PF11999.8	gi|345004944|ref|YP_004807797.1|	-	0.0014	18.3	0.1	0.33	10.5	0.0	3.4	2	2	1	3	3	3	1	Protein	of	unknown	function	(DUF3494)
Hexapep_2	PF14602.6	gi|345004944|ref|YP_004807797.1|	-	0.0046	16.7	8.3	1.7	8.4	0.8	4.5	4	1	0	4	4	4	2	Hexapeptide	repeat	of	succinyl-transferase
HAD_2	PF13419.6	gi|345004945|ref|YP_004807798.1|	-	1.3e-13	51.4	0.0	1.5e-13	51.2	0.0	1.2	1	0	0	1	1	1	1	Haloacid	dehalogenase-like	hydrolase
Hydrolase	PF00702.26	gi|345004945|ref|YP_004807798.1|	-	4.7e-12	46.7	1.2	1.2e-11	45.3	1.2	1.6	1	1	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Hydrolase_like	PF13242.6	gi|345004945|ref|YP_004807798.1|	-	0.00037	20.5	0.3	0.0013	18.8	0.1	2.0	2	0	0	2	2	2	1	HAD-hyrolase-like
HAD	PF12710.7	gi|345004945|ref|YP_004807798.1|	-	0.0071	16.8	0.1	0.0082	16.6	0.1	1.2	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Hydrolase_6	PF13344.6	gi|345004945|ref|YP_004807798.1|	-	0.093	12.8	0.0	0.23	11.6	0.0	1.6	1	0	0	1	1	1	0	Haloacid	dehalogenase-like	hydrolase
MMR_HSR1_C	PF08438.10	gi|345004946|ref|YP_004807799.1|	-	1.7e-30	105.9	0.0	2.7e-30	105.2	0.0	1.3	1	0	0	1	1	1	1	GTPase	of	unknown	function	C-terminal
MMR_HSR1	PF01926.23	gi|345004946|ref|YP_004807799.1|	-	8.9e-21	74.1	0.0	1.6e-19	70.1	0.0	2.5	3	0	0	3	3	3	1	50S	ribosome-binding	GTPase
TGS	PF02824.21	gi|345004946|ref|YP_004807799.1|	-	6e-11	42.2	0.0	1.7e-10	40.8	0.0	1.8	2	0	0	2	2	2	1	TGS	domain
FeoB_N	PF02421.18	gi|345004946|ref|YP_004807799.1|	-	1.7e-09	37.4	0.0	1e-07	31.6	0.0	2.9	3	0	0	3	3	3	1	Ferrous	iron	transport	protein	B
Na_Ca_ex	PF01699.24	gi|345004947|ref|YP_004807800.1|	-	2.2e-35	121.8	33.9	3.8e-19	69.1	15.8	2.1	2	0	0	2	2	2	2	Sodium/calcium	exchanger	protein
AA_permease_2	PF13520.6	gi|345004948|ref|YP_004807801.1|	-	5.6e-42	144.1	41.7	7e-42	143.7	41.7	1.0	1	0	0	1	1	1	1	Amino	acid	permease
AA_permease	PF00324.21	gi|345004948|ref|YP_004807801.1|	-	2.9e-40	138.3	40.1	3.7e-40	137.9	40.1	1.1	1	0	0	1	1	1	1	Amino	acid	permease
Trp_Tyr_perm	PF03222.13	gi|345004948|ref|YP_004807801.1|	-	2.1	7.3	31.7	6.5	5.7	31.6	1.9	1	1	0	1	1	1	0	Tryptophan/tyrosine	permease	family
Usp	PF00582.26	gi|345004949|ref|YP_004807802.1|	-	1.5e-07	32.0	2.3	1.4e-05	25.6	0.2	2.2	2	0	0	2	2	2	2	Universal	stress	protein	family
HhH-GPD	PF00730.25	gi|345004950|ref|YP_004807803.1|	-	5.1e-16	59.1	0.0	7.5e-16	58.5	0.0	1.2	1	0	0	1	1	1	1	HhH-GPD	superfamily	base	excision	DNA	repair	protein
HHH	PF00633.23	gi|345004950|ref|YP_004807803.1|	-	1.7e-09	37.1	0.0	3.5e-09	36.1	0.0	1.6	1	0	0	1	1	1	1	Helix-hairpin-helix	motif
Aminotran_3	PF00202.21	gi|345004952|ref|YP_004807805.1|	-	2.8e-76	256.8	0.0	2.3e-75	253.8	0.0	1.9	1	1	0	1	1	1	1	Aminotransferase	class-III
DUF4010	PF13194.6	gi|345004953|ref|YP_004807806.1|	-	3.1e-47	161.0	30.1	3.1e-47	161.0	30.1	3.4	2	2	1	3	3	3	1	Domain	of	unknown	function	(DUF4010)
MgtC	PF02308.16	gi|345004953|ref|YP_004807806.1|	-	1.9e-22	79.9	12.0	1.9e-22	79.9	12.0	3.6	2	1	1	3	3	3	1	MgtC	family
AI-2E_transport	PF01594.16	gi|345004954|ref|YP_004807807.1|	-	6.2e-23	81.5	37.4	1.6e-22	80.1	37.4	1.7	1	1	0	1	1	1	1	AI-2E	family	transporter
PadR	PF03551.14	gi|345004955|ref|YP_004807808.1|	-	1.6e-17	63.2	1.3	1.9e-17	63.0	1.3	1.1	1	0	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
DUF1495	PF07381.11	gi|345004955|ref|YP_004807808.1|	-	0.0029	17.4	0.0	0.0042	16.9	0.0	1.2	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain	(DUF1495)
HTH_45	PF14947.6	gi|345004955|ref|YP_004807808.1|	-	0.0047	16.9	0.0	0.0066	16.4	0.0	1.2	1	0	0	1	1	1	1	Winged	helix-turn-helix
MarR_2	PF12802.7	gi|345004955|ref|YP_004807808.1|	-	0.012	15.5	0.1	1.8	8.6	0.0	2.3	2	0	0	2	2	2	0	MarR	family
DUF4364	PF14277.6	gi|345004955|ref|YP_004807808.1|	-	0.072	12.8	0.0	0.083	12.6	0.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4364)
HTH_27	PF13463.6	gi|345004955|ref|YP_004807808.1|	-	0.1	13.1	0.3	0.13	12.7	0.3	1.5	1	1	0	1	1	1	0	Winged	helix	DNA-binding	domain
TrmB	PF01978.19	gi|345004955|ref|YP_004807808.1|	-	0.12	12.3	0.1	0.16	11.9	0.1	1.2	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
TF_Zn_Ribbon	PF08271.12	gi|345004958|ref|YP_004807811.1|	-	8.8e-05	21.9	1.5	0.00022	20.7	1.5	1.7	1	0	0	1	1	1	1	TFIIB	zinc-binding
HypA	PF01155.19	gi|345004958|ref|YP_004807811.1|	-	0.0035	17.4	1.1	0.0081	16.2	1.1	1.6	1	0	0	1	1	1	1	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
DZR	PF12773.7	gi|345004958|ref|YP_004807811.1|	-	0.0081	16.2	0.6	0.017	15.1	0.6	1.5	1	0	0	1	1	1	1	Double	zinc	ribbon
Zn-ribbon_8	PF09723.10	gi|345004958|ref|YP_004807811.1|	-	0.014	15.5	0.8	0.039	14.1	0.8	1.7	1	0	0	1	1	1	0	Zinc	ribbon	domain
zf-C2H2_3	PF13878.6	gi|345004958|ref|YP_004807811.1|	-	0.027	14.3	2.6	0.55	10.1	0.1	2.5	1	1	1	2	2	2	0	zinc-finger	of	acetyl-transferase	ESCO
zf-IS66	PF13005.7	gi|345004958|ref|YP_004807811.1|	-	0.031	14.7	2.4	0.25	11.8	0.1	2.8	2	0	0	2	2	2	0	zinc-finger	binding	domain	of	transposase	IS66
zf-ribbon_3	PF13248.6	gi|345004958|ref|YP_004807811.1|	-	0.071	12.5	2.3	4.1	6.9	0.1	2.3	2	0	0	2	2	2	0	zinc-ribbon	domain
adh_short	PF00106.25	gi|345004958|ref|YP_004807811.1|	-	0.087	12.3	0.2	0.2	11.1	0.1	1.6	1	1	1	2	2	2	0	short	chain	dehydrogenase
A2L_zn_ribbon	PF08792.10	gi|345004958|ref|YP_004807811.1|	-	0.15	11.9	0.5	0.28	11.0	0.5	1.4	1	0	0	1	1	1	0	A2L	zinc	ribbon	domain
Zn_Tnp_IS91	PF14319.6	gi|345004958|ref|YP_004807811.1|	-	0.18	11.9	1.2	0.42	10.7	1.2	1.6	1	0	0	1	1	1	0	Transposase	zinc-binding	domain
UPF0547	PF10571.9	gi|345004958|ref|YP_004807811.1|	-	2.1	8.5	4.0	5.5	7.2	0.2	2.3	2	0	0	2	2	2	0	Uncharacterised	protein	family	UPF0547
FYDLN_acid	PF09538.10	gi|345004958|ref|YP_004807811.1|	-	2.2	9.0	7.3	0.26	12.0	0.2	2.4	2	1	1	3	3	3	0	Protein	of	unknown	function	(FYDLN_acid)
DUF1451	PF07295.11	gi|345004958|ref|YP_004807811.1|	-	2.5	8.1	6.1	0.54	10.3	0.6	2.3	2	0	0	2	2	2	0	Zinc-ribbon	containing	domain
Zn_Tnp_IS1595	PF12760.7	gi|345004958|ref|YP_004807811.1|	-	6.1	6.9	12.2	1.9	8.5	0.1	3.7	4	1	1	5	5	4	0	Transposase	zinc-ribbon	domain
Usp	PF00582.26	gi|345004959|ref|YP_004807812.1|	-	2e-13	51.1	0.3	2.3e-13	50.9	0.3	1.0	1	0	0	1	1	1	1	Universal	stress	protein	family
THF_DHG_CYH_C	PF02882.19	gi|345004960|ref|YP_004807813.1|	-	7.4e-63	210.6	1.6	1.1e-62	210.0	1.6	1.3	1	0	0	1	1	1	1	Tetrahydrofolate	dehydrogenase/cyclohydrolase,	NAD(P)-binding	domain
THF_DHG_CYH	PF00763.23	gi|345004960|ref|YP_004807813.1|	-	5.5e-38	129.8	0.3	1e-37	128.9	0.3	1.5	1	0	0	1	1	1	1	Tetrahydrofolate	dehydrogenase/cyclohydrolase,	catalytic	domain
AlaDh_PNT_C	PF01262.21	gi|345004960|ref|YP_004807813.1|	-	0.00059	19.2	0.4	0.00094	18.5	0.4	1.3	1	0	0	1	1	1	1	Alanine	dehydrogenase/PNT,	C-terminal	domain
OMPdecase	PF00215.24	gi|345004960|ref|YP_004807813.1|	-	0.059	13.0	0.0	0.12	11.9	0.0	1.7	1	1	0	1	1	1	0	Orotidine	5'-phosphate	decarboxylase	/	HUMPS	family
SHMT	PF00464.19	gi|345004961|ref|YP_004807814.1|	-	3.5e-149	496.8	0.0	4.2e-149	496.5	0.0	1.1	1	0	0	1	1	1	1	Serine	hydroxymethyltransferase
Aminotran_1_2	PF00155.21	gi|345004961|ref|YP_004807814.1|	-	2.2e-10	40.2	0.0	6.9e-10	38.6	0.0	1.8	1	1	0	1	1	1	1	Aminotransferase	class	I	and	II
DUF348	PF03990.14	gi|345004961|ref|YP_004807814.1|	-	0.01	15.6	0.5	0.061	13.1	0.0	2.6	3	0	0	3	3	3	1	G5-linked-Ubiquitin-like	domain
Ferritin	PF00210.24	gi|345004961|ref|YP_004807814.1|	-	0.17	11.8	1.4	0.53	10.2	0.0	2.4	3	0	0	3	3	3	0	Ferritin-like	domain
CHAT	PF12770.7	gi|345004962|ref|YP_004807815.1|	-	0.14	11.5	0.2	0.38	10.1	0.2	1.5	1	1	0	1	1	1	0	CHAT	domain
YcaO	PF02624.16	gi|345004965|ref|YP_004807818.1|	-	8.4e-53	179.7	6.9	1.1e-52	179.4	6.9	1.1	1	0	0	1	1	1	1	YcaO	cyclodehydratase,	ATP-ad	Mg2+-binding
Amidohydro_1	PF01979.20	gi|345004966|ref|YP_004807819.1|	-	7.6e-29	101.1	0.1	9.7e-26	90.9	0.1	2.9	1	1	0	1	1	1	1	Amidohydrolase	family
A_deaminase	PF00962.22	gi|345004966|ref|YP_004807819.1|	-	2.5e-09	36.9	0.0	3.5e-09	36.4	0.0	1.1	1	0	0	1	1	1	1	Adenosine/AMP	deaminase
Amidohydro_3	PF07969.11	gi|345004966|ref|YP_004807819.1|	-	2.9e-07	30.3	3.5	2.7e-06	27.2	0.2	2.3	1	1	1	2	2	2	2	Amidohydrolase	family
CPSase_L_D2	PF02786.17	gi|345004967|ref|YP_004807820.1|	-	1e-74	250.6	0.1	1.6e-74	250.0	0.1	1.3	1	0	0	1	1	1	1	Carbamoyl-phosphate	synthase	L	chain,	ATP	binding	domain
Biotin_carb_N	PF00289.22	gi|345004967|ref|YP_004807820.1|	-	1.4e-43	147.9	1.5	2.8e-43	146.9	0.3	2.2	2	0	0	2	2	2	1	Biotin	carboxylase,	N-terminal	domain
Biotin_carb_C	PF02785.19	gi|345004967|ref|YP_004807820.1|	-	4.7e-35	120.0	0.0	9.9e-35	118.9	0.0	1.6	1	0	0	1	1	1	1	Biotin	carboxylase	C-terminal	domain
Biotin_lipoyl	PF00364.22	gi|345004967|ref|YP_004807820.1|	-	1.3e-17	63.4	6.6	1.3e-17	63.4	6.6	2.6	3	0	0	3	3	3	1	Biotin-requiring	enzyme
Dala_Dala_lig_C	PF07478.13	gi|345004967|ref|YP_004807820.1|	-	4.7e-09	36.1	0.1	1.7e-08	34.2	0.1	2.0	2	1	0	2	2	2	1	D-ala	D-ala	ligase	C-terminus
ATP-grasp	PF02222.22	gi|345004967|ref|YP_004807820.1|	-	5.9e-09	35.7	0.2	1.3e-08	34.6	0.2	1.6	1	0	0	1	1	1	1	ATP-grasp	domain
Biotin_lipoyl_2	PF13533.6	gi|345004967|ref|YP_004807820.1|	-	7.8e-08	32.0	1.6	0.0054	16.5	0.2	2.9	1	1	1	2	2	2	2	Biotin-lipoyl	like
ATP-grasp_3	PF02655.14	gi|345004967|ref|YP_004807820.1|	-	9.1e-07	29.1	0.0	1.7e-06	28.2	0.0	1.5	1	0	0	1	1	1	1	ATP-grasp	domain
GARS_A	PF01071.19	gi|345004967|ref|YP_004807820.1|	-	3.3e-05	23.7	0.3	0.00015	21.6	0.0	2.1	2	0	0	2	2	2	1	Phosphoribosylglycinamide	synthetase,	ATP-grasp	(A)	domain
ATP-grasp_5	PF13549.6	gi|345004967|ref|YP_004807820.1|	-	0.0007	19.1	0.0	0.0013	18.2	0.0	1.4	1	0	0	1	1	1	1	ATP-grasp	domain
ATPgrasp_ST	PF14397.6	gi|345004967|ref|YP_004807820.1|	-	0.0054	16.0	0.0	0.011	15.0	0.0	1.4	1	0	0	1	1	1	1	Sugar-transfer	associated	ATP-grasp
HlyD_3	PF13437.6	gi|345004967|ref|YP_004807820.1|	-	0.0087	16.7	1.0	5.5	7.7	0.1	2.8	2	0	0	2	2	2	2	HlyD	family	secretion	protein
ATPgrasp_Ter	PF15632.6	gi|345004967|ref|YP_004807820.1|	-	0.047	13.4	0.0	0.11	12.2	0.0	1.6	1	0	0	1	1	1	0	ATP-grasp	in	the	biosynthetic	pathway	with	Ter	operon
HlyD_D23	PF16576.5	gi|345004967|ref|YP_004807820.1|	-	0.089	12.0	0.6	8.6	5.5	0.1	2.4	1	1	1	2	2	2	0	Barrel-sandwich	domain	of	CusB	or	HlyD	membrane-fusion
CoA_binding_2	PF13380.6	gi|345004967|ref|YP_004807820.1|	-	0.25	11.8	1.8	20	5.7	0.3	2.4	1	1	0	2	2	2	0	CoA	binding	domain
UPF0179	PF03684.13	gi|345004968|ref|YP_004807821.1|	-	1.6e-46	157.7	0.1	1.8e-46	157.5	0.1	1.0	1	0	0	1	1	1	1	Uncharacterised	protein	family	(UPF0179)
DDE_Tnp_1_6	PF13751.6	gi|345004968|ref|YP_004807821.1|	-	0.0083	16.4	0.7	0.01	16.0	0.1	1.5	2	0	0	2	2	2	1	Transposase	DDE	domain
DUF2188	PF09954.9	gi|345004969|ref|YP_004807822.1|	-	0.05	13.8	0.1	0.1	12.8	0.1	1.5	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2188)
DNA_photolyase	PF00875.18	gi|345004970|ref|YP_004807823.1|	-	0.11	12.6	1.3	0.11	12.5	1.3	1.1	1	0	0	1	1	1	0	DNA	photolyase
Aminotran_3	PF00202.21	gi|345004972|ref|YP_004807825.1|	-	3.8e-73	246.5	0.0	1.6e-72	244.4	0.0	1.7	1	1	0	1	1	1	1	Aminotransferase	class-III
2-Hacid_dh_C	PF02826.19	gi|345004973|ref|YP_004807826.1|	-	6.7e-49	165.6	0.0	9.5e-49	165.2	0.0	1.2	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
2-Hacid_dh	PF00389.30	gi|345004973|ref|YP_004807826.1|	-	5e-09	35.9	0.0	6.3e-09	35.6	0.0	1.1	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	catalytic	domain
F420_oxidored	PF03807.17	gi|345004973|ref|YP_004807826.1|	-	0.0017	18.9	0.0	0.0039	17.7	0.0	1.7	1	0	0	1	1	1	1	NADP	oxidoreductase	coenzyme	F420-dependent
IlvN	PF07991.12	gi|345004973|ref|YP_004807826.1|	-	0.0045	16.6	0.0	0.012	15.2	0.0	1.7	2	0	0	2	2	2	1	Acetohydroxy	acid	isomeroreductase,	NADPH-binding	domain
DUF4440	PF14534.6	gi|345004973|ref|YP_004807826.1|	-	0.024	15.1	0.1	1.1	9.8	0.0	3.0	2	1	1	3	3	3	0	Domain	of	unknown	function	(DUF4440)
TrkA_N	PF02254.18	gi|345004973|ref|YP_004807826.1|	-	0.029	14.6	0.3	0.8	10.0	0.0	2.7	3	0	0	3	3	3	0	TrkA-N	domain
NAD_binding_7	PF13241.6	gi|345004973|ref|YP_004807826.1|	-	0.09	13.2	0.0	0.17	12.4	0.0	1.4	1	0	0	1	1	1	0	Putative	NAD(P)-binding
ThiF	PF00899.21	gi|345004973|ref|YP_004807826.1|	-	0.11	11.9	0.0	0.18	11.1	0.0	1.3	1	0	0	1	1	1	0	ThiF	family
Shikimate_DH	PF01488.20	gi|345004973|ref|YP_004807826.1|	-	0.17	12.0	0.0	0.84	9.7	0.0	2.0	2	0	0	2	2	2	0	Shikimate	/	quinate	5-dehydrogenase
Peptidase_M24	PF00557.24	gi|345004974|ref|YP_004807827.1|	-	1.2e-33	116.5	0.0	1.7e-33	116.1	0.0	1.2	1	0	0	1	1	1	1	Metallopeptidase	family	M24
Creatinase_N	PF01321.18	gi|345004974|ref|YP_004807827.1|	-	9.2e-22	78.1	0.2	1.7e-21	77.2	0.2	1.5	1	0	0	1	1	1	1	Creatinase/Prolidase	N-terminal	domain
Aminotran_3	PF00202.21	gi|345004975|ref|YP_004807828.1|	-	1.2e-96	323.8	0.0	1.5e-96	323.6	0.0	1.0	1	0	0	1	1	1	1	Aminotransferase	class-III
Peptidase_M20	PF01546.28	gi|345004976|ref|YP_004807829.1|	-	2e-18	66.8	7.7	5.3e-18	65.5	7.7	1.7	1	1	0	1	1	1	1	Peptidase	family	M20/M25/M40
M20_dimer	PF07687.14	gi|345004976|ref|YP_004807829.1|	-	2.1e-12	46.9	0.8	4.7e-12	45.8	0.8	1.6	1	0	0	1	1	1	1	Peptidase	dimerisation	domain
EamA	PF00892.20	gi|345004978|ref|YP_004807831.1|	-	2.1e-18	66.8	40.5	1.5e-10	41.4	19.6	2.0	2	0	0	2	2	2	2	EamA-like	transporter	family
Mg_trans_NIPA	PF05653.14	gi|345004978|ref|YP_004807831.1|	-	0.00099	18.3	3.6	0.00099	18.3	3.6	2.8	2	1	1	3	3	3	1	Magnesium	transporter	NIPA
Arginase	PF00491.21	gi|345004979|ref|YP_004807832.1|	-	4.3e-63	213.4	1.0	5.2e-63	213.2	1.0	1.0	1	0	0	1	1	1	1	Arginase	family
RhlB	PF12300.8	gi|345004979|ref|YP_004807832.1|	-	0.058	13.5	0.0	0.14	12.3	0.0	1.6	1	0	0	1	1	1	0	ATP-dependent	RNA	helicase	RhlB
SBP_bac_8	PF13416.6	gi|345004980|ref|YP_004807833.1|	-	2.2e-09	37.6	0.8	3.4e-09	36.9	0.8	1.3	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_6	PF13343.6	gi|345004980|ref|YP_004807833.1|	-	1.8e-06	27.5	0.4	2.4e-06	27.1	0.4	1.1	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
TAT_signal	PF10518.9	gi|345004980|ref|YP_004807833.1|	-	5e-05	23.0	1.8	0.00011	21.8	1.8	1.6	1	0	0	1	1	1	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
ABC_tran	PF00005.27	gi|345004981|ref|YP_004807834.1|	-	8.4e-36	123.5	0.0	1.3e-35	122.9	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
TOBE_2	PF08402.10	gi|345004981|ref|YP_004807834.1|	-	2.7e-12	46.7	0.0	9e-12	45.0	0.0	1.9	1	0	0	1	1	1	1	TOBE	domain
AAA_16	PF13191.6	gi|345004981|ref|YP_004807834.1|	-	0.0023	18.3	0.3	0.0086	16.5	0.0	1.9	2	1	0	2	2	2	1	AAA	ATPase	domain
RsgA_GTPase	PF03193.16	gi|345004981|ref|YP_004807834.1|	-	0.0038	17.1	0.1	0.0076	16.2	0.1	1.4	1	0	0	1	1	1	1	RsgA	GTPase
AAA_22	PF13401.6	gi|345004981|ref|YP_004807834.1|	-	0.005	17.1	0.1	0.012	15.9	0.1	1.5	1	0	0	1	1	1	1	AAA	domain
AAA_29	PF13555.6	gi|345004981|ref|YP_004807834.1|	-	0.014	15.1	0.0	0.029	14.1	0.0	1.5	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
Rad17	PF03215.15	gi|345004981|ref|YP_004807834.1|	-	0.022	14.7	0.0	0.035	14.0	0.0	1.2	1	0	0	1	1	1	0	Rad17	P-loop	domain
AAA_21	PF13304.6	gi|345004981|ref|YP_004807834.1|	-	0.024	14.4	0.1	0.69	9.7	0.1	2.3	1	1	0	2	2	2	0	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
DUF1861	PF08950.10	gi|345004981|ref|YP_004807834.1|	-	0.027	13.7	0.0	0.044	13.0	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1861)
CysA_C_terminal	PF17850.1	gi|345004981|ref|YP_004807834.1|	-	0.039	14.5	0.2	0.21	12.2	0.1	2.4	2	0	0	2	2	1	0	CysA	C-terminal	regulatory	domain
SRP54	PF00448.22	gi|345004981|ref|YP_004807834.1|	-	0.049	13.3	0.0	0.091	12.4	0.0	1.3	1	0	0	1	1	1	0	SRP54-type	protein,	GTPase	domain
AAA_23	PF13476.6	gi|345004981|ref|YP_004807834.1|	-	0.063	13.8	0.0	0.19	12.2	0.0	1.7	2	0	0	2	2	2	0	AAA	domain
AAA	PF00004.29	gi|345004981|ref|YP_004807834.1|	-	0.085	13.3	0.1	0.48	10.8	0.0	2.1	2	0	0	2	2	2	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
PhoH	PF02562.16	gi|345004981|ref|YP_004807834.1|	-	0.1	12.0	0.5	11	5.4	0.1	2.3	2	0	0	2	2	2	0	PhoH-like	protein
AAA_30	PF13604.6	gi|345004981|ref|YP_004807834.1|	-	0.12	12.1	0.1	0.21	11.3	0.1	1.3	1	0	0	1	1	1	0	AAA	domain
G-alpha	PF00503.20	gi|345004981|ref|YP_004807834.1|	-	0.12	11.5	0.0	0.21	10.7	0.0	1.3	1	0	0	1	1	1	0	G-protein	alpha	subunit
NACHT	PF05729.12	gi|345004981|ref|YP_004807834.1|	-	0.23	11.4	0.4	1.3	9.0	0.1	2.0	2	0	0	2	2	2	0	NACHT	domain
BPD_transp_1	PF00528.22	gi|345004982|ref|YP_004807835.1|	-	1.2e-11	44.7	27.8	1e-10	41.7	27.8	2.1	1	1	0	1	1	1	1	Binding-protein-dependent	transport	system	inner	membrane	component
SHP	PF03579.13	gi|345004982|ref|YP_004807835.1|	-	0.05	13.6	0.2	0.05	13.6	0.2	2.8	3	0	0	3	3	3	0	Small	hydrophobic	protein
BPD_transp_1	PF00528.22	gi|345004983|ref|YP_004807836.1|	-	1.1e-16	61.1	17.3	1.1e-16	61.1	17.3	1.9	2	0	0	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
Phage_int_SAM_4	PF13495.6	gi|345004984|ref|YP_004807837.1|	-	0.051	14.1	0.1	0.96	10.0	0.0	2.6	3	0	0	3	3	3	0	Phage	integrase,	N-terminal	SAM-like	domain
DAO	PF01266.24	gi|345004985|ref|YP_004807838.1|	-	1.2e-61	209.2	2.3	1.4e-61	209.0	2.3	1.0	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
NAD_binding_8	PF13450.6	gi|345004985|ref|YP_004807838.1|	-	5.3e-06	26.6	0.2	5.3e-06	26.6	0.2	2.4	3	0	0	3	3	3	1	NAD(P)-binding	Rossmann-like	domain
Pyr_redox_2	PF07992.14	gi|345004985|ref|YP_004807838.1|	-	2.2e-05	23.8	0.3	0.0067	15.7	0.0	2.2	2	0	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_oxidored	PF12831.7	gi|345004985|ref|YP_004807838.1|	-	0.001	18.5	0.3	0.0015	17.9	0.3	1.3	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
ApbA	PF02558.16	gi|345004985|ref|YP_004807838.1|	-	0.0011	18.7	0.0	0.0016	18.1	0.0	1.3	1	0	0	1	1	1	1	Ketopantoate	reductase	PanE/ApbA
Trp_halogenase	PF04820.14	gi|345004985|ref|YP_004807838.1|	-	0.0018	17.2	0.8	0.13	11.1	0.1	2.1	2	0	0	2	2	2	2	Tryptophan	halogenase
3HCDH_N	PF02737.18	gi|345004985|ref|YP_004807838.1|	-	0.0019	18.1	0.8	0.0031	17.4	0.8	1.3	1	0	0	1	1	1	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
GMC_oxred_N	PF00732.19	gi|345004985|ref|YP_004807838.1|	-	0.0052	16.2	0.0	2	7.7	0.0	2.1	2	0	0	2	2	2	2	GMC	oxidoreductase
Pyr_redox	PF00070.27	gi|345004985|ref|YP_004807838.1|	-	0.0064	17.0	0.7	0.055	14.0	0.3	2.3	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
YtxH	PF12732.7	gi|345004985|ref|YP_004807838.1|	-	0.011	16.2	0.7	0.027	15.0	0.7	1.5	1	0	0	1	1	1	0	YtxH-like	protein
FAD_binding_3	PF01494.19	gi|345004985|ref|YP_004807838.1|	-	0.025	13.8	0.5	0.063	12.5	0.5	1.6	2	0	0	2	2	2	0	FAD	binding	domain
Pyr_redox_3	PF13738.6	gi|345004985|ref|YP_004807838.1|	-	0.14	11.4	0.1	6.9	5.8	0.0	2.1	2	0	0	2	2	2	0	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_binding_2	PF00890.24	gi|345004985|ref|YP_004807838.1|	-	0.34	9.9	3.7	2.6	7.0	3.6	2.0	1	1	0	1	1	1	0	FAD	binding	domain
GIDA	PF01134.22	gi|345004985|ref|YP_004807838.1|	-	0.79	8.7	4.1	4.2	6.3	0.9	2.1	2	0	0	2	2	2	0	Glucose	inhibited	division	protein	A
Creatininase	PF02633.14	gi|345004986|ref|YP_004807839.1|	-	4.5e-67	226.0	3.5	5.2e-67	225.8	3.5	1.0	1	0	0	1	1	1	1	Creatinine	amidohydrolase
2-Hacid_dh_C	PF02826.19	gi|345004987|ref|YP_004807840.1|	-	2.4e-13	49.8	0.0	1.1e-12	47.7	0.0	1.8	1	1	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
DpaA_N	PF16924.5	gi|345004987|ref|YP_004807840.1|	-	0.12	12.5	0.0	0.18	11.9	0.0	1.2	1	0	0	1	1	1	0	Dipicolinate	synthase	subunit	A	N-terminal	domain
3HCDH_N	PF02737.18	gi|345004988|ref|YP_004807841.1|	-	1.2e-65	220.8	0.3	1.9e-65	220.1	0.3	1.3	1	0	0	1	1	1	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
ECH_1	PF00378.20	gi|345004988|ref|YP_004807841.1|	-	3.9e-53	180.3	0.0	5.7e-53	179.8	0.0	1.3	1	0	0	1	1	1	1	Enoyl-CoA	hydratase/isomerase
3HCDH	PF00725.22	gi|345004988|ref|YP_004807841.1|	-	1.6e-48	163.2	2.1	1.1e-32	112.4	0.0	3.3	3	0	0	3	3	3	2	3-hydroxyacyl-CoA	dehydrogenase,	C-terminal	domain
ECH_2	PF16113.5	gi|345004988|ref|YP_004807841.1|	-	1.3e-30	107.1	0.1	8.9e-27	94.4	0.1	2.4	1	1	1	2	2	2	2	Enoyl-CoA	hydratase/isomerase
NAD_Gly3P_dh_N	PF01210.23	gi|345004988|ref|YP_004807841.1|	-	6.1e-06	26.3	0.2	1.4e-05	25.2	0.2	1.6	1	1	0	1	1	1	1	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
NAD_binding_2	PF03446.15	gi|345004988|ref|YP_004807841.1|	-	1e-05	25.7	0.1	2.5e-05	24.5	0.1	1.7	1	0	0	1	1	1	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
F420_oxidored	PF03807.17	gi|345004988|ref|YP_004807841.1|	-	0.00088	19.8	1.2	0.0042	17.6	1.2	2.2	1	1	0	1	1	1	1	NADP	oxidoreductase	coenzyme	F420-dependent
ABC_tran	PF00005.27	gi|345004989|ref|YP_004807842.1|	-	1.9e-32	112.7	0.0	2.7e-32	112.1	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|345004989|ref|YP_004807842.1|	-	2.5e-10	40.7	0.1	0.00019	21.3	0.0	2.1	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|345004989|ref|YP_004807842.1|	-	0.00017	21.1	1.5	0.0033	16.9	0.1	2.1	1	1	1	2	2	2	1	RecF/RecN/SMC	N	terminal	domain
AAA_23	PF13476.6	gi|345004989|ref|YP_004807842.1|	-	0.0018	18.8	0.0	0.0024	18.4	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
AAA_29	PF13555.6	gi|345004989|ref|YP_004807842.1|	-	0.0034	17.1	0.1	0.0072	16.0	0.1	1.5	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_30	PF13604.6	gi|345004989|ref|YP_004807842.1|	-	0.0036	17.0	0.7	0.0056	16.4	0.1	1.5	2	0	0	2	2	2	1	AAA	domain
AAA_16	PF13191.6	gi|345004989|ref|YP_004807842.1|	-	0.004	17.5	0.0	0.0061	17.0	0.0	1.4	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_15	PF13175.6	gi|345004989|ref|YP_004807842.1|	-	0.011	15.4	0.2	0.2	11.3	0.0	2.1	2	0	0	2	2	2	0	AAA	ATPase	domain
AAA_27	PF13514.6	gi|345004989|ref|YP_004807842.1|	-	0.013	15.1	0.0	0.022	14.4	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
AAA_22	PF13401.6	gi|345004989|ref|YP_004807842.1|	-	0.052	13.8	0.9	0.29	11.4	0.3	2.0	2	0	0	2	2	2	0	AAA	domain
AAA_7	PF12775.7	gi|345004989|ref|YP_004807842.1|	-	0.081	12.4	0.2	0.12	11.9	0.2	1.2	1	0	0	1	1	1	0	P-loop	containing	dynein	motor	region
NB-ARC	PF00931.22	gi|345004989|ref|YP_004807842.1|	-	0.094	11.9	0.4	0.14	11.3	0.4	1.2	1	0	0	1	1	1	0	NB-ARC	domain
AAA_18	PF13238.6	gi|345004989|ref|YP_004807842.1|	-	0.1	13.1	0.5	1.4	9.5	0.2	2.3	2	1	0	2	2	2	0	AAA	domain
RsgA_GTPase	PF03193.16	gi|345004989|ref|YP_004807842.1|	-	0.18	11.7	0.1	0.3	11.0	0.1	1.3	1	0	0	1	1	1	0	RsgA	GTPase
AAA_33	PF13671.6	gi|345004989|ref|YP_004807842.1|	-	0.24	11.5	0.3	0.46	10.6	0.3	1.4	1	0	0	1	1	1	0	AAA	domain
SbcCD_C	PF13558.6	gi|345004989|ref|YP_004807842.1|	-	0.39	11.0	1.7	9.2	6.6	1.7	2.3	1	1	0	1	1	1	0	Putative	exonuclease	SbcCD,	C	subunit
ABC_tran	PF00005.27	gi|345004990|ref|YP_004807843.1|	-	4.4e-30	105.0	0.0	5.9e-30	104.6	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|345004990|ref|YP_004807843.1|	-	9.3e-11	42.1	3.4	7.5e-06	26.0	0.2	2.1	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
BCA_ABC_TP_C	PF12399.8	gi|345004990|ref|YP_004807843.1|	-	2e-09	37.2	0.8	5e-09	35.9	0.8	1.7	1	0	0	1	1	1	1	Branched-chain	amino	acid	ATP-binding	cassette	transporter
SMC_N	PF02463.19	gi|345004990|ref|YP_004807843.1|	-	5.3e-05	22.8	0.9	0.00055	19.4	0.9	2.0	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_23	PF13476.6	gi|345004990|ref|YP_004807843.1|	-	0.001	19.6	3.2	0.0013	19.3	3.2	1.5	1	1	0	1	1	1	1	AAA	domain
AAA_29	PF13555.6	gi|345004990|ref|YP_004807843.1|	-	0.001	18.8	0.1	0.0022	17.7	0.1	1.5	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
MukB	PF04310.12	gi|345004990|ref|YP_004807843.1|	-	0.027	14.3	0.1	0.043	13.6	0.1	1.3	1	0	0	1	1	1	0	MukB	N-terminal
RsgA_GTPase	PF03193.16	gi|345004990|ref|YP_004807843.1|	-	0.067	13.1	0.0	0.15	12.0	0.0	1.5	1	0	0	1	1	1	0	RsgA	GTPase
AAA_30	PF13604.6	gi|345004990|ref|YP_004807843.1|	-	0.076	12.7	0.9	0.28	10.9	0.2	2.4	1	1	1	2	2	2	0	AAA	domain
AAA	PF00004.29	gi|345004990|ref|YP_004807843.1|	-	0.077	13.4	0.1	0.58	10.6	0.1	2.2	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_27	PF13514.6	gi|345004990|ref|YP_004807843.1|	-	0.089	12.4	0.1	0.16	11.6	0.1	1.3	1	0	0	1	1	1	0	AAA	domain
Zeta_toxin	PF06414.12	gi|345004990|ref|YP_004807843.1|	-	0.11	11.8	0.0	0.21	10.8	0.0	1.5	1	0	0	1	1	1	0	Zeta	toxin
MMR_HSR1	PF01926.23	gi|345004990|ref|YP_004807843.1|	-	0.19	11.8	0.3	0.49	10.5	0.1	1.9	2	1	0	2	2	2	0	50S	ribosome-binding	GTPase
AAA_22	PF13401.6	gi|345004990|ref|YP_004807843.1|	-	0.21	11.8	1.0	1.1	9.5	1.0	2.1	1	1	0	1	1	1	0	AAA	domain
BPD_transp_2	PF02653.16	gi|345004991|ref|YP_004807844.1|	-	3.6e-34	118.1	39.0	3.6e-34	118.1	39.0	3.5	1	1	1	3	3	3	1	Branched-chain	amino	acid	transport	system	/	permease	component
BPD_transp_2	PF02653.16	gi|345004992|ref|YP_004807845.1|	-	1.1e-39	136.3	40.2	1.1e-39	136.3	40.2	1.7	1	1	1	2	2	2	1	Branched-chain	amino	acid	transport	system	/	permease	component
Acetyltransf_1	PF00583.25	gi|345004993|ref|YP_004807846.1|	-	1.1e-17	64.3	0.3	2.4e-17	63.3	0.2	1.6	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_10	PF13673.7	gi|345004993|ref|YP_004807846.1|	-	3.3e-12	46.5	0.0	7.6e-12	45.3	0.0	1.7	2	0	0	2	2	2	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_7	PF13508.7	gi|345004993|ref|YP_004807846.1|	-	9.5e-11	42.0	0.1	1.6e-10	41.2	0.1	1.3	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
FR47	PF08445.10	gi|345004993|ref|YP_004807846.1|	-	0.0012	18.8	0.0	0.0025	17.7	0.0	1.5	1	0	0	1	1	1	1	FR47-like	protein
Acetyltransf_8	PF13523.6	gi|345004993|ref|YP_004807846.1|	-	0.0033	17.1	0.0	0.005	16.5	0.0	1.3	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_9	PF13527.7	gi|345004993|ref|YP_004807846.1|	-	0.011	15.8	0.0	0.014	15.4	0.0	1.2	1	0	0	1	1	1	0	Acetyltransferase	(GNAT)	domain
Acetyltransf_3	PF13302.7	gi|345004993|ref|YP_004807846.1|	-	0.02	15.5	0.1	0.028	15.1	0.1	1.3	1	1	0	1	1	1	0	Acetyltransferase	(GNAT)	domain
Acetyltransf_CG	PF14542.6	gi|345004993|ref|YP_004807846.1|	-	0.047	13.8	0.1	0.084	13.0	0.1	1.5	1	0	0	1	1	1	0	GCN5-related	N-acetyl-transferase
TOBE	PF03459.17	gi|345004994|ref|YP_004807847.1|	-	2.2e-16	59.9	1.4	2.2e-16	59.9	1.4	2.8	2	1	0	2	2	2	1	TOBE	domain
HTH_1	PF00126.27	gi|345004994|ref|YP_004807847.1|	-	1.3e-10	41.0	0.4	1.3e-10	41.0	0.4	2.4	2	1	0	2	2	2	1	Bacterial	regulatory	helix-turn-helix	protein,	lysR	family
Myosin_N	PF02736.19	gi|345004994|ref|YP_004807847.1|	-	1.3	8.9	3.3	0.95	9.3	0.1	2.3	3	0	0	3	3	3	0	Myosin	N-terminal	SH3-like	domain
SBP_bac_11	PF13531.6	gi|345004995|ref|YP_004807848.1|	-	7.6e-28	97.8	0.1	9.1e-28	97.5	0.1	1.1	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_1	PF01547.25	gi|345004995|ref|YP_004807848.1|	-	1.2e-06	28.8	0.5	7.3e-05	22.9	0.1	2.3	2	0	0	2	2	2	2	Bacterial	extracellular	solute-binding	protein
SBP_bac_6	PF13343.6	gi|345004995|ref|YP_004807848.1|	-	0.03	13.7	0.0	0.049	13.0	0.0	1.3	1	0	0	1	1	1	0	Bacterial	extracellular	solute-binding	protein
SBP_bac_8	PF13416.6	gi|345004995|ref|YP_004807848.1|	-	0.081	12.7	0.7	0.69	9.7	0.1	2.1	2	0	0	2	2	2	0	Bacterial	extracellular	solute-binding	protein
BPD_transp_1	PF00528.22	gi|345004996|ref|YP_004807849.1|	-	3.5e-17	62.7	8.6	3.5e-17	62.7	8.6	2.4	2	1	0	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
DUF4149	PF13664.6	gi|345004996|ref|YP_004807849.1|	-	1.6	9.1	7.5	0.31	11.4	0.3	3.2	2	2	0	2	2	2	0	Domain	of	unknown	function	(DUF4149)
ABC_tran	PF00005.27	gi|345004997|ref|YP_004807850.1|	-	6.2e-29	101.3	0.0	9.3e-29	100.7	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
SMC_N	PF02463.19	gi|345004997|ref|YP_004807850.1|	-	8.1e-05	22.2	0.0	0.022	14.2	0.0	2.2	2	0	0	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
AAA_21	PF13304.6	gi|345004997|ref|YP_004807850.1|	-	0.00042	20.2	0.0	0.14	12.0	0.0	2.2	1	1	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
TOBE_2	PF08402.10	gi|345004997|ref|YP_004807850.1|	-	0.00053	20.1	3.9	0.0017	18.4	1.5	2.8	2	0	0	2	2	2	1	TOBE	domain
AAA_16	PF13191.6	gi|345004997|ref|YP_004807850.1|	-	0.001	19.5	0.2	0.0025	18.2	0.1	1.7	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_22	PF13401.6	gi|345004997|ref|YP_004807850.1|	-	0.0024	18.2	0.0	0.0083	16.4	0.0	1.8	2	1	0	2	2	2	1	AAA	domain
AAA_5	PF07728.14	gi|345004997|ref|YP_004807850.1|	-	0.015	15.3	0.1	1.2	9.1	0.0	2.5	2	0	0	2	2	2	0	AAA	domain	(dynein-related	subfamily)
AAA_29	PF13555.6	gi|345004997|ref|YP_004807850.1|	-	0.022	14.5	0.0	0.043	13.6	0.0	1.4	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
IstB_IS21	PF01695.17	gi|345004997|ref|YP_004807850.1|	-	0.074	12.8	0.0	0.21	11.3	0.0	1.7	1	0	0	1	1	1	0	IstB-like	ATP	binding	protein
AAA_33	PF13671.6	gi|345004997|ref|YP_004807850.1|	-	0.14	12.3	0.5	0.58	10.3	0.5	2.1	1	1	0	1	1	1	0	AAA	domain
Ribosomal_S17e	PF00833.18	gi|345004998|ref|YP_004807851.1|	-	8.9e-13	48.2	0.4	9.8e-13	48.1	0.4	1.0	1	0	0	1	1	1	1	Ribosomal	S17
IBN_N	PF03810.19	gi|345004998|ref|YP_004807851.1|	-	0.12	12.3	0.0	0.16	11.9	0.0	1.2	1	0	0	1	1	1	0	Importin-beta	N-terminal	domain
FAD_binding_3	PF01494.19	gi|345004999|ref|YP_004807852.1|	-	9.5e-11	41.5	0.7	6.3e-10	38.8	0.7	1.9	1	1	0	1	1	1	1	FAD	binding	domain
DAO	PF01266.24	gi|345004999|ref|YP_004807852.1|	-	1.2e-10	41.5	5.1	5.8e-06	26.1	0.1	2.2	1	1	0	2	2	2	2	FAD	dependent	oxidoreductase
Pyr_redox_2	PF07992.14	gi|345004999|ref|YP_004807852.1|	-	2.1e-10	40.4	0.0	8.4e-05	21.9	0.1	2.3	2	0	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
Trp_halogenase	PF04820.14	gi|345004999|ref|YP_004807852.1|	-	5.2e-08	32.2	1.1	1.1e-05	24.4	0.0	2.2	2	0	0	2	2	2	2	Tryptophan	halogenase
FAD_oxidored	PF12831.7	gi|345004999|ref|YP_004807852.1|	-	8.3e-08	32.0	0.0	1.3e-07	31.4	0.0	1.2	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
HI0933_like	PF03486.14	gi|345004999|ref|YP_004807852.1|	-	4.3e-07	29.0	0.0	0.00032	19.5	0.1	2.2	2	0	0	2	2	2	2	HI0933-like	protein
FAD_binding_2	PF00890.24	gi|345004999|ref|YP_004807852.1|	-	6.5e-06	25.5	0.9	1.3e-05	24.5	0.9	1.5	1	0	0	1	1	1	1	FAD	binding	domain
NAD_binding_8	PF13450.6	gi|345004999|ref|YP_004807852.1|	-	0.0002	21.5	0.3	0.00063	19.9	0.3	1.9	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
Pyr_redox_3	PF13738.6	gi|345004999|ref|YP_004807852.1|	-	0.0002	20.7	0.5	0.00039	19.8	0.5	1.4	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_binding_9	PF13454.6	gi|345004999|ref|YP_004807852.1|	-	0.00052	20.0	0.3	0.55	10.2	0.0	2.5	2	0	0	2	2	2	2	FAD-NAD(P)-binding
GIDA	PF01134.22	gi|345004999|ref|YP_004807852.1|	-	0.0014	17.8	0.2	0.0024	17.0	0.2	1.3	1	0	0	1	1	1	1	Glucose	inhibited	division	protein	A
Thi4	PF01946.17	gi|345004999|ref|YP_004807852.1|	-	0.0048	16.2	0.1	0.025	13.8	0.1	2.0	2	0	0	2	2	2	1	Thi4	family
Lycopene_cycl	PF05834.12	gi|345004999|ref|YP_004807852.1|	-	0.015	14.3	0.3	0.35	9.9	0.6	2.0	2	0	0	2	2	2	0	Lycopene	cyclase	protein
AlaDh_PNT_C	PF01262.21	gi|345004999|ref|YP_004807852.1|	-	0.034	13.5	0.3	0.05	12.9	0.3	1.2	1	0	0	1	1	1	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
PAC2	PF09754.9	gi|345005000|ref|YP_004807853.1|	-	4.1e-29	102.1	0.0	4.7e-29	101.9	0.0	1.0	1	0	0	1	1	1	1	PAC2	family
MFS_1	PF07690.16	gi|345005001|ref|YP_004807854.1|	-	5.5e-38	130.8	63.3	2.1e-24	86.1	32.2	2.0	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
LacY_symp	PF01306.19	gi|345005001|ref|YP_004807854.1|	-	0.00026	19.9	0.3	0.00026	19.9	0.3	2.2	2	1	1	3	3	3	1	LacY	proton/sugar	symporter
TMEM171	PF15471.6	gi|345005001|ref|YP_004807854.1|	-	0.12	11.4	0.2	0.2	10.6	0.2	1.3	1	0	0	1	1	1	0	Transmembrane	protein	family	171
DUF447	PF04289.12	gi|345005002|ref|YP_004807855.1|	-	2.5e-41	141.4	0.0	2.8e-41	141.2	0.0	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF447)
Cytochrom_B558a	PF05038.13	gi|345005002|ref|YP_004807855.1|	-	0.025	14.2	0.0	0.044	13.4	0.0	1.4	1	0	0	1	1	1	0	Cytochrome	Cytochrome	b558	alpha-subunit
CitG	PF01874.16	gi|345005003|ref|YP_004807856.1|	-	1.7e-61	208.4	4.4	1.9e-61	208.2	4.4	1.0	1	0	0	1	1	1	1	ATP:dephospho-CoA	triphosphoribosyl	transferase
Dus	PF01207.17	gi|345005004|ref|YP_004807857.1|	-	1.6e-11	43.9	0.2	6.4e-11	41.9	0.2	1.7	1	1	0	1	1	1	1	Dihydrouridine	synthase	(Dus)
His_biosynth	PF00977.21	gi|345005004|ref|YP_004807857.1|	-	1.3e-05	24.8	0.1	2.8e-05	23.7	0.1	1.6	2	0	0	2	2	2	1	Histidine	biosynthesis	protein
NMO	PF03060.15	gi|345005004|ref|YP_004807857.1|	-	0.00089	18.7	0.4	0.0014	18.1	0.4	1.3	1	0	0	1	1	1	1	Nitronate	monooxygenase
IMPDH	PF00478.25	gi|345005004|ref|YP_004807857.1|	-	0.0086	15.1	0.1	0.0088	15.1	0.1	1.2	1	0	0	1	1	1	1	IMP	dehydrogenase	/	GMP	reductase	domain
NmrA	PF05368.13	gi|345005004|ref|YP_004807857.1|	-	0.042	13.4	0.5	0.065	12.8	0.5	1.2	1	0	0	1	1	1	0	NmrA-like	family
G3P_antiterm	PF04309.12	gi|345005004|ref|YP_004807857.1|	-	0.045	13.2	0.0	0.068	12.6	0.0	1.2	1	0	0	1	1	1	0	Glycerol-3-phosphate	responsive	antiterminator
Radical_SAM	PF04055.21	gi|345005004|ref|YP_004807857.1|	-	0.17	12.3	0.1	2.3	8.6	0.0	2.6	1	1	0	1	1	1	0	Radical	SAM	superfamily
Ribul_P_3_epim	PF00834.19	gi|345005004|ref|YP_004807857.1|	-	0.19	11.1	0.2	0.53	9.6	0.1	1.8	1	1	0	1	1	1	0	Ribulose-phosphate	3	epimerase	family
UPF0052	PF01933.18	gi|345005005|ref|YP_004807858.1|	-	1.6e-42	145.8	0.0	2e-42	145.5	0.0	1.1	1	0	0	1	1	1	1	Uncharacterised	protein	family	UPF0052
HD	PF01966.22	gi|345005006|ref|YP_004807859.1|	-	2.8e-12	46.9	4.0	2.8e-12	46.9	4.0	1.9	2	0	0	2	2	2	1	HD	domain
F420_ligase	PF01996.16	gi|345005007|ref|YP_004807860.1|	-	1.3e-57	194.9	0.0	1.6e-57	194.6	0.0	1.0	1	0	0	1	1	1	1	F420-0:Gamma-glutamyl	ligase
Bac_luciferase	PF00296.20	gi|345005008|ref|YP_004807861.1|	-	8.4e-62	209.4	13.0	1.1e-61	209.0	13.0	1.0	1	0	0	1	1	1	1	Luciferase-like	monooxygenase
DUF3123	PF11321.8	gi|345005008|ref|YP_004807861.1|	-	0.038	14.7	0.1	0.21	12.3	0.0	2.0	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3123)
ISK_Channel	PF02060.15	gi|345005009|ref|YP_004807862.1|	-	0.23	11.2	0.1	0.25	11.1	0.1	1.0	1	0	0	1	1	1	0	Slow	voltage-gated	potassium	channel
NurA	PF09376.10	gi|345005010|ref|YP_004807863.1|	-	1e-17	64.6	0.0	1.2e-17	64.4	0.0	1.1	1	0	0	1	1	1	1	NurA	domain
DUF5633	PF18656.1	gi|345005011|ref|YP_004807864.1|	-	0.051	13.5	0.0	0.08	12.8	0.0	1.3	1	0	0	1	1	1	0	Family	of	unknown	function	(DUF5633)
DUF87	PF01935.17	gi|345005012|ref|YP_004807865.1|	-	2.7e-09	37.5	0.0	6.4e-09	36.2	0.0	1.6	2	0	0	2	2	2	1	Helicase	HerA,	central	domain
DUF853	PF05872.12	gi|345005012|ref|YP_004807865.1|	-	4.8e-07	28.8	0.1	0.00061	18.5	0.1	2.2	2	0	0	2	2	2	2	Bacterial	protein	of	unknown	function	(DUF853)
ResIII	PF04851.15	gi|345005012|ref|YP_004807865.1|	-	0.0023	17.9	0.0	1.3	9.0	0.0	2.2	2	0	0	2	2	2	2	Type	III	restriction	enzyme,	res	subunit
DEAD	PF00270.29	gi|345005012|ref|YP_004807865.1|	-	0.014	15.2	0.0	1.1	9.0	0.0	2.2	1	1	0	2	2	2	0	DEAD/DEAH	box	helicase
AAA_22	PF13401.6	gi|345005012|ref|YP_004807865.1|	-	0.02	15.2	0.0	0.24	11.7	0.0	2.3	2	0	0	2	2	2	0	AAA	domain
TrwB_AAD_bind	PF10412.9	gi|345005012|ref|YP_004807865.1|	-	0.023	13.6	0.0	0.053	12.4	0.0	1.5	2	0	0	2	2	2	0	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
AAA	PF00004.29	gi|345005012|ref|YP_004807865.1|	-	0.032	14.7	0.0	0.86	10.0	0.1	2.4	2	0	0	2	2	2	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_10	PF12846.7	gi|345005012|ref|YP_004807865.1|	-	0.033	13.1	0.0	0.45	9.4	0.0	2.0	2	0	0	2	2	2	0	AAA-like	domain
ALF	PF03752.13	gi|345005012|ref|YP_004807865.1|	-	0.057	13.4	0.5	2	8.5	0.1	2.9	2	0	0	2	2	2	0	Short	repeats	of	unknown	function
FtsK_SpoIIIE	PF01580.18	gi|345005012|ref|YP_004807865.1|	-	0.059	12.7	0.0	0.21	10.9	0.0	1.8	2	0	0	2	2	2	0	FtsK/SpoIIIE	family
AAA_16	PF13191.6	gi|345005012|ref|YP_004807865.1|	-	0.06	13.7	0.0	0.27	11.6	0.0	2.1	1	1	0	1	1	1	0	AAA	ATPase	domain
T2SSE	PF00437.20	gi|345005012|ref|YP_004807865.1|	-	0.14	11.2	0.0	0.25	10.4	0.0	1.3	1	0	0	1	1	1	0	Type	II/IV	secretion	system	protein
Putative_PNPOx	PF01243.20	gi|345005013|ref|YP_004807866.1|	-	6.1e-11	42.4	0.0	7.9e-11	42.0	0.0	1.2	1	0	0	1	1	1	1	Pyridoxamine	5'-phosphate	oxidase
Pyridox_ox_2	PF12900.7	gi|345005013|ref|YP_004807866.1|	-	8.6e-11	42.0	0.3	9.3e-11	41.9	0.3	1.0	1	0	0	1	1	1	1	Pyridoxamine	5'-phosphate	oxidase
DUF1282	PF06930.12	gi|345005014|ref|YP_004807867.1|	-	2.8	7.7	11.9	4.9	6.9	11.9	1.5	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF1282)
Archease	PF01951.16	gi|345005016|ref|YP_004807869.1|	-	3.4e-35	121.3	0.2	3.8e-35	121.1	0.2	1.0	1	0	0	1	1	1	1	Archease	protein	family	(MTH1598/TM1083)
GCHY-1	PF02649.14	gi|345005017|ref|YP_004807870.1|	-	1e-75	254.6	0.2	1.2e-75	254.4	0.2	1.0	1	0	0	1	1	1	1	Type	I	GTP	cyclohydrolase	folE2
FolB	PF02152.18	gi|345005017|ref|YP_004807870.1|	-	0.048	14.2	0.0	0.22	12.1	0.0	2.0	2	0	0	2	2	2	0	Dihydroneopterin	aldolase
TrmB	PF01978.19	gi|345005018|ref|YP_004807871.1|	-	4.2e-21	74.6	0.2	9.6e-21	73.4	0.2	1.6	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
PadR	PF03551.14	gi|345005018|ref|YP_004807871.1|	-	0.0037	17.2	0.0	0.0092	15.9	0.0	1.6	1	0	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
DprA_WH	PF17782.1	gi|345005018|ref|YP_004807871.1|	-	0.013	15.6	0.1	0.052	13.7	0.1	2.0	1	0	0	1	1	1	0	DprA	winged	helix	domain
HTH_IclR	PF09339.10	gi|345005018|ref|YP_004807871.1|	-	0.014	15.2	0.1	0.033	14.0	0.1	1.7	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
MarR_2	PF12802.7	gi|345005018|ref|YP_004807871.1|	-	0.026	14.4	0.1	0.062	13.2	0.1	1.7	1	0	0	1	1	1	0	MarR	family
MerR-DNA-bind	PF09278.11	gi|345005018|ref|YP_004807871.1|	-	0.029	14.9	1.2	0.073	13.6	0.4	2.1	2	0	0	2	2	2	0	MerR,	DNA	binding
B12-binding	PF02310.19	gi|345005018|ref|YP_004807871.1|	-	0.092	12.8	0.0	0.15	12.1	0.0	1.5	1	0	0	1	1	1	0	B12	binding	domain
FUSC	PF04632.12	gi|345005018|ref|YP_004807871.1|	-	0.23	10.0	1.3	0.28	9.6	1.3	1.1	1	0	0	1	1	1	0	Fusaric	acid	resistance	protein	family
Thioredox_DsbH	PF03190.15	gi|345005019|ref|YP_004807872.1|	-	8.9e-22	77.8	0.0	1.4e-21	77.1	0.0	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function,	DUF255
Thioredoxin_7	PF13899.6	gi|345005019|ref|YP_004807872.1|	-	1.3e-11	44.5	0.0	2.3e-11	43.7	0.0	1.4	1	0	0	1	1	1	1	Thioredoxin-like
GlcNAc_2-epim	PF07221.11	gi|345005019|ref|YP_004807872.1|	-	6.7e-06	25.6	0.7	0.0013	18.1	0.1	2.2	2	0	0	2	2	2	2	N-acylglucosamine	2-epimerase	(GlcNAc	2-epimerase)
Thioredoxin	PF00085.20	gi|345005019|ref|YP_004807872.1|	-	5.8e-05	23.0	0.0	0.0001	22.3	0.0	1.3	1	0	0	1	1	1	1	Thioredoxin
Glyco_hydro_88	PF07470.13	gi|345005019|ref|YP_004807872.1|	-	0.012	14.7	0.0	1.3	8.1	0.0	2.8	2	2	1	3	3	3	0	Glycosyl	Hydrolase	Family	88
Thioredoxin_2	PF13098.6	gi|345005019|ref|YP_004807872.1|	-	0.018	15.4	0.0	0.036	14.5	0.0	1.4	1	0	0	1	1	1	0	Thioredoxin-like	domain
Glyco_hydro_76	PF03663.14	gi|345005019|ref|YP_004807872.1|	-	0.027	14.0	0.3	1.7	8.1	0.0	2.8	3	0	0	3	3	3	0	Glycosyl	hydrolase	family	76
Glyco_hydro2_C5	PF18565.1	gi|345005019|ref|YP_004807872.1|	-	0.032	14.1	0.1	0.071	13.0	0.1	1.5	1	0	0	1	1	1	0	Glycoside	hydrolase	family	2	C-terminal	domain	5
Fe-S_biosyn	PF01521.20	gi|345005020|ref|YP_004807873.1|	-	7.3e-17	61.6	0.0	8.2e-17	61.4	0.0	1.0	1	0	0	1	1	1	1	Iron-sulphur	cluster	biosynthesis
Methyltransf_25	PF13649.6	gi|345005021|ref|YP_004807874.1|	-	3.4e-09	37.3	0.0	9.1e-09	35.9	0.0	1.7	2	0	0	2	2	2	1	Methyltransferase	domain
Methyltransf_11	PF08241.12	gi|345005021|ref|YP_004807874.1|	-	1.9e-08	34.8	0.0	3.7e-08	33.9	0.0	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.6	gi|345005021|ref|YP_004807874.1|	-	2.1e-08	34.2	0.0	3.6e-08	33.4	0.0	1.3	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.12	gi|345005021|ref|YP_004807874.1|	-	2.6e-05	24.9	0.0	4.8e-05	24.0	0.0	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
MTS	PF05175.14	gi|345005021|ref|YP_004807874.1|	-	0.0053	16.3	0.0	0.011	15.3	0.0	1.5	1	1	0	1	1	1	1	Methyltransferase	small	domain
Methyltransf_31	PF13847.6	gi|345005021|ref|YP_004807874.1|	-	0.032	14.0	0.0	0.052	13.4	0.0	1.3	1	0	0	1	1	1	0	Methyltransferase	domain
MetW	PF07021.12	gi|345005021|ref|YP_004807874.1|	-	0.13	11.8	0.0	0.21	11.2	0.0	1.2	1	0	0	1	1	1	0	Methionine	biosynthesis	protein	MetW
Histidinol_dh	PF00815.20	gi|345005022|ref|YP_004807875.1|	-	1.8e-156	521.3	2.5	2.1e-156	521.0	2.5	1.0	1	0	0	1	1	1	1	Histidinol	dehydrogenase
Band_7	PF01145.25	gi|345005022|ref|YP_004807875.1|	-	0.055	13.5	3.9	2.7	8.0	0.0	2.4	2	0	0	2	2	2	0	SPFH	domain	/	Band	7	family
CSD	PF00313.22	gi|345005023|ref|YP_004807876.1|	-	6.9e-21	73.9	0.1	7.5e-21	73.8	0.1	1.0	1	0	0	1	1	1	1	'Cold-shock'	DNA-binding	domain
Rho_RNA_bind	PF07497.12	gi|345005023|ref|YP_004807876.1|	-	0.024	14.5	0.0	0.029	14.3	0.0	1.1	1	0	0	1	1	1	0	Rho	termination	factor,	RNA-binding	domain
S1-like	PF14444.6	gi|345005023|ref|YP_004807876.1|	-	0.055	13.4	3.4	0.13	12.2	3.4	1.7	1	1	0	1	1	1	0	S1-like
OB_RNB	PF08206.11	gi|345005023|ref|YP_004807876.1|	-	0.065	12.9	2.5	0.096	12.4	2.5	1.4	1	0	0	1	1	1	0	Ribonuclease	B	OB	domain
CusF_Ec	PF11604.8	gi|345005023|ref|YP_004807876.1|	-	0.066	13.2	0.0	0.081	12.9	0.0	1.3	1	0	0	1	1	1	0	Copper	binding	periplasmic	protein	CusF
Methyltransf_25	PF13649.6	gi|345005024|ref|YP_004807877.1|	-	3.6e-16	59.7	0.1	6.3e-16	58.9	0.1	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_11	PF08241.12	gi|345005024|ref|YP_004807877.1|	-	7.9e-14	52.1	0.1	1.2e-13	51.5	0.1	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.6	gi|345005024|ref|YP_004807877.1|	-	3.5e-10	40.0	0.0	4.6e-10	39.6	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.6	gi|345005024|ref|YP_004807877.1|	-	1.7e-09	37.7	0.0	1.9e-09	37.5	0.0	1.1	1	0	0	1	1	1	1	Methyltransferase	domain
MetW	PF07021.12	gi|345005024|ref|YP_004807877.1|	-	1.5e-07	31.3	0.0	2.3e-07	30.6	0.0	1.2	1	0	0	1	1	1	1	Methionine	biosynthesis	protein	MetW
Methyltransf_12	PF08242.12	gi|345005024|ref|YP_004807877.1|	-	3.3e-07	31.0	0.1	5.9e-07	30.2	0.1	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_24	PF13578.6	gi|345005024|ref|YP_004807877.1|	-	0.0014	19.7	0.2	0.0041	18.1	0.1	1.7	1	1	1	2	2	2	1	Methyltransferase	domain
DUF938	PF06080.12	gi|345005024|ref|YP_004807877.1|	-	0.0094	15.7	0.0	0.021	14.6	0.0	1.7	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF938)
Spermine_synth	PF01564.17	gi|345005024|ref|YP_004807877.1|	-	0.014	14.8	0.0	0.018	14.5	0.0	1.1	1	0	0	1	1	1	0	Spermine/spermidine	synthase	domain
MTS	PF05175.14	gi|345005024|ref|YP_004807877.1|	-	0.015	14.9	0.0	0.02	14.4	0.0	1.2	1	0	0	1	1	1	0	Methyltransferase	small	domain
CMAS	PF02353.20	gi|345005024|ref|YP_004807877.1|	-	0.025	13.9	0.0	0.029	13.6	0.0	1.1	1	0	0	1	1	1	0	Mycolic	acid	cyclopropane	synthetase
Pox_MCEL	PF03291.16	gi|345005024|ref|YP_004807877.1|	-	0.057	12.5	0.0	0.069	12.2	0.0	1.2	1	0	0	1	1	1	0	mRNA	capping	enzyme
MaAIMP_sms	PF16951.5	gi|345005024|ref|YP_004807877.1|	-	0.17	11.6	0.1	0.31	10.8	0.1	1.3	1	0	0	1	1	1	0	Putative	methionine	and	alanine	importer,	small	subunit
TrmB	PF01978.19	gi|345005025|ref|YP_004807878.1|	-	1.9e-17	62.9	0.0	2.9e-17	62.3	0.0	1.3	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
Regulator_TrmB	PF11495.8	gi|345005025|ref|YP_004807878.1|	-	6.1e-06	25.6	0.0	7.8e-06	25.2	0.0	1.1	1	0	0	1	1	1	1	Archaeal	transcriptional	regulator	TrmB
HTH_IclR	PF09339.10	gi|345005025|ref|YP_004807878.1|	-	0.00072	19.3	0.0	0.0017	18.1	0.0	1.6	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
HTH_20	PF12840.7	gi|345005025|ref|YP_004807878.1|	-	0.0011	19.0	0.0	0.0034	17.4	0.0	1.8	1	0	0	1	1	1	1	Helix-turn-helix	domain
Rrf2	PF02082.20	gi|345005025|ref|YP_004807878.1|	-	0.034	14.5	0.0	0.088	13.2	0.0	1.7	2	0	0	2	2	2	0	Transcriptional	regulator
MarR_2	PF12802.7	gi|345005025|ref|YP_004807878.1|	-	0.076	12.9	0.0	0.27	11.1	0.0	2.0	1	0	0	1	1	1	0	MarR	family
P22_CoatProtein	PF11651.8	gi|345005025|ref|YP_004807878.1|	-	0.1	11.2	0.7	0.16	10.6	0.7	1.2	1	0	0	1	1	1	0	P22	coat	protein	-	gene	protein	5
MMPL	PF03176.15	gi|345005026|ref|YP_004807879.1|	-	5.1e-36	124.3	41.9	6.1e-20	71.4	16.5	3.7	3	2	0	4	4	4	2	MMPL	family
Patched	PF02460.18	gi|345005026|ref|YP_004807879.1|	-	5.4e-08	31.4	18.7	2.4e-05	22.6	4.9	2.2	2	0	0	2	2	2	2	Patched	family
Sterol-sensing	PF12349.8	gi|345005026|ref|YP_004807879.1|	-	1.3e-07	31.6	8.8	0.0003	20.6	0.8	2.5	2	0	0	2	2	2	2	Sterol-sensing	domain	of	SREBP	cleavage-activation
SecD_SecF	PF02355.16	gi|345005026|ref|YP_004807879.1|	-	1.1e-06	28.1	20.9	0.00036	20.0	4.5	2.5	2	0	0	2	2	2	2	Protein	export	membrane	protein
SKA2	PF16740.5	gi|345005026|ref|YP_004807879.1|	-	0.13	12.0	6.4	0.091	12.5	3.6	2.1	2	0	0	2	2	2	0	Spindle	and	kinetochore-associated	protein	2
Spc7	PF08317.11	gi|345005026|ref|YP_004807879.1|	-	0.65	8.8	10.6	0.65	8.8	4.3	2.3	2	0	0	2	2	2	0	Spc7	kinetochore	protein
bZIP_1	PF00170.21	gi|345005026|ref|YP_004807879.1|	-	2.9	8.1	6.0	2.6	8.2	1.1	2.6	2	1	0	2	2	2	0	bZIP	transcription	factor
DZR	PF12773.7	gi|345005027|ref|YP_004807880.1|	-	0.00047	20.1	0.6	0.00068	19.6	0.6	1.2	1	0	0	1	1	1	1	Double	zinc	ribbon
zf-ribbon_3	PF13248.6	gi|345005027|ref|YP_004807880.1|	-	0.0013	18.1	1.7	0.0021	17.4	1.7	1.4	1	0	0	1	1	1	1	zinc-ribbon	domain
zinc_ribbon_15	PF17032.5	gi|345005027|ref|YP_004807880.1|	-	0.044	14.5	0.2	0.06	14.1	0.2	1.2	1	0	0	1	1	1	0	zinc-ribbon	family
CBP_BcsG	PF11658.8	gi|345005027|ref|YP_004807880.1|	-	0.06	11.7	0.0	0.07	11.5	0.0	1.1	1	0	0	1	1	1	0	Cellulose	biosynthesis	protein	BcsG
DUF2628	PF10947.8	gi|345005027|ref|YP_004807880.1|	-	0.11	12.9	1.1	0.15	12.4	1.1	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2628)
zinc_ribbon_2	PF13240.6	gi|345005027|ref|YP_004807880.1|	-	0.12	12.1	2.4	0.2	11.4	2.4	1.4	1	0	0	1	1	1	0	zinc-ribbon	domain
Nudix_N_2	PF14803.6	gi|345005027|ref|YP_004807880.1|	-	0.3	11.1	2.6	6.9	6.7	0.2	2.3	2	0	0	2	2	2	0	Nudix	N-terminal
Zn-ribbon_8	PF09723.10	gi|345005027|ref|YP_004807880.1|	-	1.7	8.8	5.2	1.5	9.0	0.6	2.2	2	0	0	2	2	2	0	Zinc	ribbon	domain
DUF108	PF01958.18	gi|345005028|ref|YP_004807881.1|	-	1.3e-18	67.1	0.1	4e-18	65.6	0.0	1.8	2	1	0	2	2	2	1	Domain	of	unknown	function	DUF108
NAD_binding_3	PF03447.16	gi|345005028|ref|YP_004807881.1|	-	9.4e-09	36.0	0.0	1.6e-08	35.2	0.0	1.4	1	0	0	1	1	1	1	Homoserine	dehydrogenase,	NAD	binding	domain
DapB_N	PF01113.20	gi|345005028|ref|YP_004807881.1|	-	0.00063	19.9	0.0	0.0013	18.8	0.0	1.6	1	0	0	1	1	1	1	Dihydrodipicolinate	reductase,	N-terminus
2-Hacid_dh_C	PF02826.19	gi|345005028|ref|YP_004807881.1|	-	0.018	14.4	0.0	0.031	13.6	0.0	1.3	1	0	0	1	1	1	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
Sacchrp_dh_NADP	PF03435.18	gi|345005028|ref|YP_004807881.1|	-	0.066	13.5	0.0	0.27	11.5	0.0	1.9	2	0	0	2	2	2	0	Saccharopine	dehydrogenase	NADP	binding	domain
F420_oxidored	PF03807.17	gi|345005028|ref|YP_004807881.1|	-	0.074	13.6	0.0	0.16	12.6	0.0	1.6	1	0	0	1	1	1	0	NADP	oxidoreductase	coenzyme	F420-dependent
ABC_tran	PF00005.27	gi|345005029|ref|YP_004807882.1|	-	6e-32	111.0	0.0	1e-31	110.3	0.0	1.4	1	0	0	1	1	1	1	ABC	transporter
OB_MalK	PF17912.1	gi|345005029|ref|YP_004807882.1|	-	1.6e-12	48.1	0.0	1.3e-11	45.2	0.0	2.6	3	0	0	3	3	2	1	MalK	OB	fold	domain
AAA_21	PF13304.6	gi|345005029|ref|YP_004807882.1|	-	1.7e-07	31.3	0.0	0.012	15.4	0.0	2.2	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
TOBE_2	PF08402.10	gi|345005029|ref|YP_004807882.1|	-	0.00023	21.3	0.2	0.00077	19.6	0.1	2.0	2	0	0	2	2	1	1	TOBE	domain
AAA_22	PF13401.6	gi|345005029|ref|YP_004807882.1|	-	0.0004	20.7	0.0	0.0011	19.2	0.0	1.8	2	0	0	2	2	2	1	AAA	domain
AAA_16	PF13191.6	gi|345005029|ref|YP_004807882.1|	-	0.00043	20.7	0.1	0.0035	17.7	0.0	2.2	2	0	0	2	2	2	1	AAA	ATPase	domain
AAA	PF00004.29	gi|345005029|ref|YP_004807882.1|	-	0.0025	18.2	0.0	0.0053	17.2	0.0	1.5	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
Rad17	PF03215.15	gi|345005029|ref|YP_004807882.1|	-	0.015	15.3	0.0	0.023	14.6	0.0	1.2	1	0	0	1	1	1	0	Rad17	P-loop	domain
AAA_28	PF13521.6	gi|345005029|ref|YP_004807882.1|	-	0.022	15.0	0.2	0.06	13.6	0.2	1.7	1	0	0	1	1	1	0	AAA	domain
SMC_N	PF02463.19	gi|345005029|ref|YP_004807882.1|	-	0.033	13.6	0.0	0.12	11.8	0.0	1.8	1	1	0	1	1	1	0	RecF/RecN/SMC	N	terminal	domain
AAA_30	PF13604.6	gi|345005029|ref|YP_004807882.1|	-	0.036	13.8	0.0	0.071	12.8	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
AAA_33	PF13671.6	gi|345005029|ref|YP_004807882.1|	-	0.046	13.9	0.0	0.12	12.6	0.0	1.7	1	0	0	1	1	1	0	AAA	domain
AAA_14	PF13173.6	gi|345005029|ref|YP_004807882.1|	-	0.051	13.6	0.0	0.17	11.9	0.0	1.9	2	0	0	2	2	2	0	AAA	domain
RsgA_GTPase	PF03193.16	gi|345005029|ref|YP_004807882.1|	-	0.074	12.9	0.0	0.14	12.1	0.0	1.4	1	0	0	1	1	1	0	RsgA	GTPase
SRP54	PF00448.22	gi|345005029|ref|YP_004807882.1|	-	0.085	12.5	0.0	0.14	11.8	0.0	1.3	1	0	0	1	1	1	0	SRP54-type	protein,	GTPase	domain
AAA_5	PF07728.14	gi|345005029|ref|YP_004807882.1|	-	0.098	12.7	0.1	0.38	10.7	0.1	1.9	2	0	0	2	2	2	0	AAA	domain	(dynein-related	subfamily)
AAA_23	PF13476.6	gi|345005029|ref|YP_004807882.1|	-	0.14	12.6	0.0	0.22	12.0	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
AAA_19	PF13245.6	gi|345005029|ref|YP_004807882.1|	-	0.16	12.3	0.2	0.85	9.9	0.1	2.1	2	0	0	2	2	2	0	AAA	domain
NACHT	PF05729.12	gi|345005029|ref|YP_004807882.1|	-	0.16	11.9	0.2	0.5	10.3	0.1	1.9	1	1	1	2	2	2	0	NACHT	domain
AAA_24	PF13479.6	gi|345005029|ref|YP_004807882.1|	-	0.16	11.7	0.1	0.3	10.8	0.1	1.4	1	0	0	1	1	1	0	AAA	domain
BPD_transp_1	PF00528.22	gi|345005030|ref|YP_004807883.1|	-	5.7e-19	68.6	19.6	5.7e-19	68.6	19.6	2.0	1	1	1	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
BPD_transp_1	PF00528.22	gi|345005031|ref|YP_004807884.1|	-	9.7e-18	64.6	21.7	9.7e-18	64.6	21.7	1.7	1	1	0	1	1	1	1	Binding-protein-dependent	transport	system	inner	membrane	component
SBP_bac_8	PF13416.6	gi|345005032|ref|YP_004807885.1|	-	4.5e-15	56.2	0.0	8.1e-15	55.4	0.0	1.4	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_1	PF01547.25	gi|345005032|ref|YP_004807885.1|	-	5.1e-10	39.8	0.2	7.7e-10	39.2	0.2	1.3	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
TAT_signal	PF10518.9	gi|345005032|ref|YP_004807885.1|	-	0.075	12.9	0.3	0.075	12.9	0.3	1.8	2	0	0	2	2	2	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
ABC_tran	PF00005.27	gi|345005033|ref|YP_004807886.1|	-	1.6e-34	119.3	0.0	2.3e-34	118.8	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|345005033|ref|YP_004807886.1|	-	5.9e-08	32.9	0.1	0.00017	21.5	0.0	2.1	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|345005033|ref|YP_004807886.1|	-	1.1e-07	31.6	0.0	0.00079	18.9	0.0	2.1	2	0	0	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
AAA_29	PF13555.6	gi|345005033|ref|YP_004807886.1|	-	1.6e-05	24.6	0.1	3.3e-05	23.5	0.1	1.5	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
RsgA_GTPase	PF03193.16	gi|345005033|ref|YP_004807886.1|	-	0.0015	18.4	0.0	0.0028	17.6	0.0	1.4	1	0	0	1	1	1	1	RsgA	GTPase
AAA_33	PF13671.6	gi|345005033|ref|YP_004807886.1|	-	0.01	16.0	1.6	0.078	13.1	1.6	2.1	1	1	0	1	1	1	0	AAA	domain
AAA_22	PF13401.6	gi|345005033|ref|YP_004807886.1|	-	0.012	15.9	0.3	0.09	13.0	0.0	2.1	2	0	0	2	2	2	0	AAA	domain
NTPase_1	PF03266.15	gi|345005033|ref|YP_004807886.1|	-	0.013	15.4	0.8	2.1	8.2	0.1	2.2	2	0	0	2	2	2	0	NTPase
AAA_16	PF13191.6	gi|345005033|ref|YP_004807886.1|	-	0.047	14.1	3.4	0.27	11.6	3.4	2.4	1	1	0	1	1	1	0	AAA	ATPase	domain
AAA_30	PF13604.6	gi|345005033|ref|YP_004807886.1|	-	0.066	12.9	0.4	0.13	12.0	0.3	1.8	1	1	0	1	1	1	0	AAA	domain
AAA_25	PF13481.6	gi|345005033|ref|YP_004807886.1|	-	0.074	12.6	0.1	0.42	10.1	0.0	2.0	2	0	0	2	2	2	0	AAA	domain
AAA_23	PF13476.6	gi|345005033|ref|YP_004807886.1|	-	0.088	13.3	0.0	0.26	11.8	0.0	1.7	2	0	0	2	2	2	0	AAA	domain
SbcCD_C	PF13558.6	gi|345005033|ref|YP_004807886.1|	-	0.11	12.8	0.2	1.6	9.0	0.2	2.4	1	1	0	1	1	1	0	Putative	exonuclease	SbcCD,	C	subunit
MMR_HSR1	PF01926.23	gi|345005033|ref|YP_004807886.1|	-	0.12	12.5	1.1	0.78	9.8	1.1	2.4	1	1	0	1	1	1	0	50S	ribosome-binding	GTPase
MacB_PCD	PF12704.7	gi|345005034|ref|YP_004807887.1|	-	1.6e-23	84.1	7.2	1.6e-23	84.1	7.2	1.8	2	0	0	2	2	2	1	MacB-like	periplasmic	core	domain
FtsX	PF02687.21	gi|345005034|ref|YP_004807887.1|	-	1.4e-14	54.3	1.1	1.4e-14	54.3	1.1	3.2	3	0	0	3	3	3	1	FtsX-like	permease	family
DUF677	PF05055.12	gi|345005034|ref|YP_004807887.1|	-	0.21	10.4	1.0	0.37	9.6	1.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF677)
DUF4064	PF13273.6	gi|345005034|ref|YP_004807887.1|	-	8.6	6.7	17.9	0.43	10.9	0.3	3.6	3	1	0	3	3	3	0	Protein	of	unknown	function	(DUF4064)
DUF4791	PF16039.5	gi|345005035|ref|YP_004807888.1|	-	0.061	12.8	0.5	0.072	12.6	0.5	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4791)
DUF3995	PF13160.6	gi|345005035|ref|YP_004807888.1|	-	0.22	11.9	11.0	0.26	11.7	0.6	2.1	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF3995)
DUF3481	PF11980.8	gi|345005035|ref|YP_004807888.1|	-	6.9	6.5	5.6	2.6	7.8	3.0	1.7	1	1	0	1	1	1	0	C-terminal	domain	of	neuropilin	glycoprotein
DDE_Tnp_IS240	PF13610.6	gi|345005036|ref|YP_004807889.1|	-	8.4e-11	42.3	0.2	1.5e-10	41.4	0.2	1.4	1	1	0	1	1	1	1	DDE	domain
DDE_3	PF13358.6	gi|345005036|ref|YP_004807889.1|	-	0.02	14.6	0.1	0.068	12.9	0.0	1.8	2	0	0	2	2	2	0	DDE	superfamily	endonuclease
Transposase_mut	PF00872.18	gi|345005036|ref|YP_004807889.1|	-	0.034	13.0	0.1	0.86	8.4	0.0	2.5	2	1	0	3	3	3	0	Transposase,	Mutator	family
Methyltransf_11	PF08241.12	gi|345005037|ref|YP_004807890.1|	-	1.3e-19	70.6	0.0	1.9e-19	70.1	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.6	gi|345005037|ref|YP_004807890.1|	-	7.4e-17	61.9	0.0	1.2e-16	61.1	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.6	gi|345005037|ref|YP_004807890.1|	-	1.5e-10	41.1	0.0	1.8e-10	40.8	0.0	1.1	1	0	0	1	1	1	1	Methyltransferase	domain
Ubie_methyltran	PF01209.18	gi|345005037|ref|YP_004807890.1|	-	2.4e-08	33.6	0.0	3.4e-08	33.1	0.0	1.2	1	0	0	1	1	1	1	ubiE/COQ5	methyltransferase	family
Methyltransf_23	PF13489.6	gi|345005037|ref|YP_004807890.1|	-	6e-07	29.5	0.0	1e-06	28.7	0.0	1.3	1	1	0	1	1	1	1	Methyltransferase	domain
FtsJ	PF01728.19	gi|345005037|ref|YP_004807890.1|	-	1.8e-05	24.9	0.0	2.4e-05	24.5	0.0	1.2	1	0	0	1	1	1	1	FtsJ-like	methyltransferase
RrnaAD	PF00398.20	gi|345005037|ref|YP_004807890.1|	-	3.7e-05	22.9	0.0	4.6e-05	22.6	0.0	1.1	1	0	0	1	1	1	1	Ribosomal	RNA	adenine	dimethylase
Methyltransf_12	PF08242.12	gi|345005037|ref|YP_004807890.1|	-	0.00053	20.7	0.0	0.00086	20.0	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
DREV	PF05219.12	gi|345005037|ref|YP_004807890.1|	-	0.00097	18.3	0.0	0.0012	18.0	0.0	1.2	1	0	0	1	1	1	1	DREV	methyltransferase
Methyltransf_8	PF05148.15	gi|345005037|ref|YP_004807890.1|	-	0.0016	18.3	0.0	0.0036	17.2	0.0	1.8	1	1	0	1	1	1	1	Hypothetical	methyltransferase
Met_10	PF02475.16	gi|345005037|ref|YP_004807890.1|	-	0.0037	17.0	0.0	0.0048	16.7	0.0	1.2	1	0	0	1	1	1	1	Met-10+	like-protein
Methyltransf_32	PF13679.6	gi|345005037|ref|YP_004807890.1|	-	0.084	12.9	0.0	0.13	12.3	0.0	1.3	1	0	0	1	1	1	0	Methyltransferase	domain
Methyltransf_29	PF03141.16	gi|345005037|ref|YP_004807890.1|	-	0.28	9.7	0.0	0.29	9.6	0.0	1.1	1	0	0	1	1	1	0	Putative	S-adenosyl-L-methionine-dependent	methyltransferase
Semialdhyde_dhC	PF02774.18	gi|345005038|ref|YP_004807891.1|	-	7.8e-31	107.6	0.0	1.1e-30	107.1	0.0	1.2	1	0	0	1	1	1	1	Semialdehyde	dehydrogenase,	dimerisation	domain
Semialdhyde_dh	PF01118.24	gi|345005038|ref|YP_004807891.1|	-	1.1e-30	106.5	0.0	3.5e-30	104.9	0.0	1.8	2	0	0	2	2	2	1	Semialdehyde	dehydrogenase,	NAD	binding	domain
DXP_reductoisom	PF02670.16	gi|345005038|ref|YP_004807891.1|	-	0.00089	20.0	0.0	0.0021	18.8	0.0	1.6	1	0	0	1	1	1	1	1-deoxy-D-xylulose	5-phosphate	reductoisomerase
Sacchrp_dh_NADP	PF03435.18	gi|345005038|ref|YP_004807891.1|	-	0.0035	17.6	0.0	0.0056	16.9	0.0	1.3	1	0	0	1	1	1	1	Saccharopine	dehydrogenase	NADP	binding	domain
DapB_N	PF01113.20	gi|345005038|ref|YP_004807891.1|	-	0.0041	17.3	0.0	0.0075	16.4	0.0	1.5	1	0	0	1	1	1	1	Dihydrodipicolinate	reductase,	N-terminus
NAD_binding_10	PF13460.6	gi|345005038|ref|YP_004807891.1|	-	0.07	13.0	0.0	0.12	12.3	0.0	1.4	1	0	0	1	1	1	0	NAD(P)H-binding
2-Hacid_dh_C	PF02826.19	gi|345005039|ref|YP_004807892.1|	-	2.5e-53	180.1	0.0	9.9e-53	178.1	0.0	1.8	2	0	0	2	2	2	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
2-Hacid_dh	PF00389.30	gi|345005039|ref|YP_004807892.1|	-	2.5e-12	46.6	0.0	3.2e-12	46.3	0.0	1.1	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	catalytic	domain
TrkA_N	PF02254.18	gi|345005039|ref|YP_004807892.1|	-	0.002	18.4	0.2	4.2	7.7	0.0	3.3	3	0	0	3	3	3	1	TrkA-N	domain
ThiF	PF00899.21	gi|345005039|ref|YP_004807892.1|	-	0.0051	16.2	0.0	0.0088	15.4	0.0	1.3	1	0	0	1	1	1	1	ThiF	family
NAD_binding_2	PF03446.15	gi|345005039|ref|YP_004807892.1|	-	0.0094	16.1	0.0	0.015	15.5	0.0	1.3	1	0	0	1	1	1	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
F420_oxidored	PF03807.17	gi|345005039|ref|YP_004807892.1|	-	0.014	15.9	0.0	0.087	13.4	0.0	2.1	2	0	0	2	2	2	0	NADP	oxidoreductase	coenzyme	F420-dependent
IlvN	PF07991.12	gi|345005039|ref|YP_004807892.1|	-	0.041	13.5	0.0	1	8.9	0.0	2.4	2	1	0	2	2	2	0	Acetohydroxy	acid	isomeroreductase,	NADPH-binding	domain
DpaA_N	PF16924.5	gi|345005039|ref|YP_004807892.1|	-	0.076	13.1	0.0	1.1	9.4	0.0	2.3	2	0	0	2	2	2	0	Dipicolinate	synthase	subunit	A	N-terminal	domain
Shikimate_DH	PF01488.20	gi|345005039|ref|YP_004807892.1|	-	0.092	12.8	0.1	2	8.4	0.1	2.8	2	1	0	2	2	2	0	Shikimate	/	quinate	5-dehydrogenase
SnoaL_2	PF12680.7	gi|345005040|ref|YP_004807893.1|	-	1.9e-18	66.9	1.1	2.2e-18	66.7	1.1	1.0	1	0	0	1	1	1	1	SnoaL-like	domain
SnoaL	PF07366.12	gi|345005040|ref|YP_004807893.1|	-	4.3e-11	42.7	0.2	7.9e-11	41.8	0.2	1.4	1	1	0	1	1	1	1	SnoaL-like	polyketide	cyclase
SnoaL_4	PF13577.6	gi|345005040|ref|YP_004807893.1|	-	3.6e-06	27.1	0.2	4.4e-06	26.8	0.2	1.2	1	0	0	1	1	1	1	SnoaL-like	domain
NTF2	PF02136.20	gi|345005040|ref|YP_004807893.1|	-	8.8e-06	26.3	0.0	1.2e-05	25.9	0.0	1.2	1	0	0	1	1	1	1	Nuclear	transport	factor	2	(NTF2)	domain
DUF4440	PF14534.6	gi|345005040|ref|YP_004807893.1|	-	0.011	16.1	0.3	0.014	15.8	0.3	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4440)
LEH	PF07858.12	gi|345005040|ref|YP_004807893.1|	-	0.092	12.8	0.1	0.097	12.8	0.1	1.0	1	0	0	1	1	1	0	Limonene-1,2-epoxide	hydrolase	catalytic	domain
Aldo_ket_red	PF00248.21	gi|345005041|ref|YP_004807894.1|	-	3.4e-35	121.7	0.0	4e-35	121.4	0.0	1.1	1	0	0	1	1	1	1	Aldo/keto	reductase	family
OrfB_Zn_ribbon	PF07282.11	gi|345005042|ref|YP_004807895.1|	-	2.9e-21	75.2	0.3	6.2e-21	74.1	0.3	1.6	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
OrfB_IS605	PF01385.19	gi|345005042|ref|YP_004807895.1|	-	0.12	12.6	0.3	0.48	10.7	0.0	2.1	3	0	0	3	3	3	0	Probable	transposase
IF-2B	PF01008.17	gi|345005044|ref|YP_004807897.1|	-	7.8e-47	159.8	0.1	8.9e-47	159.6	0.1	1.0	1	0	0	1	1	1	1	Initiation	factor	2	subunit	family
THDPS_N_2	PF14805.6	gi|345005044|ref|YP_004807897.1|	-	0.039	14.2	0.4	0.11	12.7	0.1	2.0	2	0	0	2	2	2	0	Tetrahydrodipicolinate	N-succinyltransferase	N-terminal
DeoRC	PF00455.22	gi|345005044|ref|YP_004807897.1|	-	0.18	11.7	1.6	0.6	10.0	0.0	2.6	4	0	0	4	4	4	0	DeoR	C	terminal	sensor	domain
zf-NADH-PPase	PF09297.11	gi|345005045|ref|YP_004807898.1|	-	0.011	15.4	1.1	0.02	14.5	0.0	2.0	3	0	0	3	3	3	0	NADH	pyrophosphatase	zinc	ribbon	domain
zf-Mss51	PF13824.6	gi|345005045|ref|YP_004807898.1|	-	0.023	14.8	0.1	0.49	10.5	0.1	2.1	2	0	0	2	2	2	0	Zinc-finger	of	mitochondrial	splicing	suppressor	51
zf-ribbon_3	PF13248.6	gi|345005045|ref|YP_004807898.1|	-	0.027	13.9	0.5	0.082	12.3	0.1	2.0	2	0	0	2	2	2	0	zinc-ribbon	domain
zf-RRN7	PF11781.8	gi|345005045|ref|YP_004807898.1|	-	0.18	11.5	2.1	0.2	11.3	0.7	1.9	2	0	0	2	2	2	0	Zinc-finger	of	RNA-polymerase	I-specific	TFIIB,	Rrn7
RtcB	PF01139.17	gi|345005046|ref|YP_004807899.1|	-	1.1e-155	518.9	0.0	1.2e-155	518.7	0.0	1.0	1	0	0	1	1	1	1	tRNA-splicing	ligase	RtcB
DoxX	PF07681.12	gi|345005047|ref|YP_004807900.1|	-	1.7e-09	38.1	28.5	8e-09	36.0	5.6	3.4	2	1	0	2	2	2	2	DoxX
DoxD	PF04173.13	gi|345005047|ref|YP_004807900.1|	-	0.019	14.9	12.1	1.5	8.7	1.0	3.7	2	1	1	3	3	3	0	TQO	small	subunit	DoxD
COX8	PF02285.15	gi|345005047|ref|YP_004807900.1|	-	1.4	8.8	3.7	8	6.4	0.9	3.0	2	0	0	2	2	2	0	Cytochrome	oxidase	c	subunit	VIII
Pyr_redox_2	PF07992.14	gi|345005049|ref|YP_004807902.1|	-	9.3e-45	153.1	0.1	1.1e-44	152.8	0.1	1.1	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox	PF00070.27	gi|345005049|ref|YP_004807902.1|	-	5.4e-10	39.7	0.9	0.00019	21.9	0.0	3.4	2	1	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_3	PF13738.6	gi|345005049|ref|YP_004807902.1|	-	1.2e-06	28.1	0.0	4.3e-06	26.2	0.0	1.8	1	1	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
Rubredoxin_C	PF18267.1	gi|345005049|ref|YP_004807902.1|	-	6.8e-06	25.9	0.0	0.00038	20.3	0.0	3.2	3	0	0	3	3	3	1	Rubredoxin	NAD+	reductase	C-terminal	domain
Reductase_C	PF14759.6	gi|345005049|ref|YP_004807902.1|	-	0.0011	19.4	0.0	0.0032	18.0	0.0	1.8	1	0	0	1	1	1	1	Reductase	C-terminal
HI0933_like	PF03486.14	gi|345005049|ref|YP_004807902.1|	-	0.0022	16.8	0.0	0.33	9.6	0.0	2.9	3	0	0	3	3	3	1	HI0933-like	protein
Trp_halogenase	PF04820.14	gi|345005049|ref|YP_004807902.1|	-	0.0031	16.4	0.1	1.2	7.9	0.0	2.3	2	0	0	2	2	2	2	Tryptophan	halogenase
NAD_binding_8	PF13450.6	gi|345005049|ref|YP_004807902.1|	-	0.0064	16.7	0.9	0.71	10.2	0.0	3.4	3	0	0	3	3	3	1	NAD(P)-binding	Rossmann-like	domain
DAO	PF01266.24	gi|345005049|ref|YP_004807902.1|	-	0.017	14.8	1.4	3.2	7.3	0.0	3.4	2	1	0	3	3	3	0	FAD	dependent	oxidoreductase
NAD_binding_9	PF13454.6	gi|345005049|ref|YP_004807902.1|	-	0.024	14.6	2.7	5	7.1	0.0	2.8	3	0	0	3	3	3	0	FAD-NAD(P)-binding
FAD_binding_2	PF00890.24	gi|345005049|ref|YP_004807902.1|	-	0.033	13.3	0.3	5.3	6.0	0.0	3.1	3	0	0	3	3	3	0	FAD	binding	domain
Amino_oxidase	PF01593.24	gi|345005051|ref|YP_004807904.1|	-	4.3e-35	121.9	0.1	4.9e-35	121.7	0.1	1.0	1	0	0	1	1	1	1	Flavin	containing	amine	oxidoreductase
NAD_binding_8	PF13450.6	gi|345005051|ref|YP_004807904.1|	-	3.8e-13	49.4	0.5	6.7e-12	45.5	0.3	2.6	2	0	0	2	2	2	1	NAD(P)-binding	Rossmann-like	domain
FAD_binding_2	PF00890.24	gi|345005051|ref|YP_004807904.1|	-	8.6e-08	31.7	0.4	0.00011	21.5	0.3	2.2	2	0	0	2	2	2	2	FAD	binding	domain
DAO	PF01266.24	gi|345005051|ref|YP_004807904.1|	-	2.1e-07	30.9	6.7	1.6e-06	28.0	6.7	1.9	1	1	0	1	1	1	1	FAD	dependent	oxidoreductase
FAD_oxidored	PF12831.7	gi|345005051|ref|YP_004807904.1|	-	0.00024	20.6	1.2	0.00045	19.7	0.3	1.7	2	0	0	2	2	2	1	FAD	dependent	oxidoreductase
Pyr_redox_2	PF07992.14	gi|345005051|ref|YP_004807904.1|	-	0.0003	20.1	0.1	0.0013	18.0	0.1	1.8	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
GIDA	PF01134.22	gi|345005051|ref|YP_004807904.1|	-	0.0035	16.5	0.1	0.0035	16.5	0.1	1.5	2	0	0	2	2	2	1	Glucose	inhibited	division	protein	A
HI0933_like	PF03486.14	gi|345005051|ref|YP_004807904.1|	-	0.0081	14.9	0.8	0.02	13.6	0.4	1.6	2	0	0	2	2	2	1	HI0933-like	protein
AlaDh_PNT_C	PF01262.21	gi|345005051|ref|YP_004807904.1|	-	0.038	13.3	1.6	0.039	13.2	0.0	1.7	2	0	0	2	2	2	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
MCRA	PF06100.11	gi|345005051|ref|YP_004807904.1|	-	0.074	11.8	0.2	0.22	10.3	0.2	1.7	2	0	0	2	2	2	0	MCRA	family
Thi4	PF01946.17	gi|345005051|ref|YP_004807904.1|	-	0.09	12.0	1.2	0.38	10.0	0.6	2.0	2	0	0	2	2	2	0	Thi4	family
Pyr_redox	PF00070.27	gi|345005051|ref|YP_004807904.1|	-	0.15	12.7	0.4	0.15	12.7	0.4	2.0	2	0	0	2	2	2	0	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_binding_9	PF13454.6	gi|345005051|ref|YP_004807904.1|	-	0.19	11.7	0.6	1	9.3	0.3	2.1	2	0	0	2	2	2	0	FAD-NAD(P)-binding
CPSase_L_D2	PF02786.17	gi|345005053|ref|YP_004807906.1|	-	1.9e-93	311.8	0.0	9.7e-57	191.9	0.0	2.6	2	1	0	2	2	2	2	Carbamoyl-phosphate	synthase	L	chain,	ATP	binding	domain
CPSase_L_D3	PF02787.19	gi|345005053|ref|YP_004807906.1|	-	3.6e-25	88.7	0.0	8.5e-25	87.5	0.0	1.6	1	0	0	1	1	1	1	Carbamoyl-phosphate	synthetase	large	chain,	oligomerisation	domain
ATPgrasp_Ter	PF15632.6	gi|345005053|ref|YP_004807906.1|	-	1.7e-12	47.2	0.0	1.3e-05	24.9	0.0	2.7	3	0	0	3	3	3	2	ATP-grasp	in	the	biosynthetic	pathway	with	Ter	operon
ATP-grasp	PF02222.22	gi|345005053|ref|YP_004807906.1|	-	1e-11	44.7	0.0	9.9e-08	31.7	0.0	2.4	2	0	0	2	2	2	2	ATP-grasp	domain
ATP-grasp_3	PF02655.14	gi|345005053|ref|YP_004807906.1|	-	7.7e-10	39.1	0.0	2.9e-05	24.2	0.0	2.4	2	0	0	2	2	2	2	ATP-grasp	domain
Dala_Dala_lig_C	PF07478.13	gi|345005053|ref|YP_004807906.1|	-	5.7e-09	35.8	0.0	1.2e-06	28.2	0.0	2.5	2	0	0	2	2	2	2	D-ala	D-ala	ligase	C-terminus
DUF3071	PF11268.8	gi|345005053|ref|YP_004807906.1|	-	0.1	12.7	0.0	0.26	11.4	0.0	1.7	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3071)
NAD_kinase	PF01513.21	gi|345005055|ref|YP_004807908.1|	-	2.2e-36	125.5	0.1	6.6e-36	124.0	0.1	1.7	1	1	0	1	1	1	1	ATP-NAD	kinase
DAGK_cat	PF00781.24	gi|345005055|ref|YP_004807908.1|	-	0.065	12.9	0.0	0.14	11.8	0.0	1.5	1	0	0	1	1	1	0	Diacylglycerol	kinase	catalytic	domain
SPO11_like	PF03533.14	gi|345005055|ref|YP_004807908.1|	-	0.066	13.3	2.1	0.63	10.2	0.1	3.1	3	0	0	3	3	3	0	SPO11	homologue
ATPase	PF06745.13	gi|345005056|ref|YP_004807909.1|	-	3.4e-54	183.6	0.0	4.2e-54	183.3	0.0	1.1	1	0	0	1	1	1	1	KaiC
AAA_25	PF13481.6	gi|345005056|ref|YP_004807909.1|	-	4.2e-07	29.7	0.0	8.4e-07	28.7	0.0	1.5	1	0	0	1	1	1	1	AAA	domain
DnaB_C	PF03796.15	gi|345005056|ref|YP_004807909.1|	-	7.7e-07	28.7	0.3	0.0043	16.4	0.1	2.2	2	0	0	2	2	2	2	DnaB-like	helicase	C	terminal	domain
RecA	PF00154.21	gi|345005056|ref|YP_004807909.1|	-	5.5e-05	22.8	0.2	0.00017	21.2	0.1	1.7	2	0	0	2	2	2	1	recA	bacterial	DNA	recombination	protein
GvpD	PF07088.11	gi|345005056|ref|YP_004807909.1|	-	6.8e-05	21.7	0.6	0.00028	19.6	0.6	1.8	1	1	0	1	1	1	1	GvpD	gas	vesicle	protein
AAA_24	PF13479.6	gi|345005056|ref|YP_004807909.1|	-	8.8e-05	22.3	0.0	0.00024	20.9	0.0	1.7	1	1	0	1	1	1	1	AAA	domain
MEDS	PF14417.6	gi|345005056|ref|YP_004807909.1|	-	0.00074	19.4	0.0	0.0014	18.5	0.0	1.4	1	0	0	1	1	1	1	MEDS:	MEthanogen/methylotroph,	DcmR	Sensory	domain
Rad51	PF08423.11	gi|345005056|ref|YP_004807909.1|	-	0.00097	18.5	0.0	0.0015	17.9	0.0	1.3	1	0	0	1	1	1	1	Rad51
AAA_14	PF13173.6	gi|345005056|ref|YP_004807909.1|	-	0.0053	16.8	0.0	0.0091	16.0	0.0	1.4	1	0	0	1	1	1	1	AAA	domain
IstB_IS21	PF01695.17	gi|345005056|ref|YP_004807909.1|	-	0.019	14.7	0.0	0.031	14.0	0.0	1.3	1	0	0	1	1	1	0	IstB-like	ATP	binding	protein
T2SSE	PF00437.20	gi|345005056|ref|YP_004807909.1|	-	0.038	13.0	0.1	0.058	12.4	0.1	1.2	1	0	0	1	1	1	0	Type	II/IV	secretion	system	protein
TrwB_AAD_bind	PF10412.9	gi|345005056|ref|YP_004807909.1|	-	0.039	12.9	0.1	0.059	12.3	0.1	1.2	1	0	0	1	1	1	0	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
PhoH	PF02562.16	gi|345005056|ref|YP_004807909.1|	-	0.051	13.0	0.1	0.085	12.3	0.1	1.2	1	0	0	1	1	1	0	PhoH-like	protein
AAA_22	PF13401.6	gi|345005056|ref|YP_004807909.1|	-	0.064	13.5	0.1	0.22	11.8	0.1	1.8	1	1	0	1	1	1	0	AAA	domain
DUF2075	PF09848.9	gi|345005056|ref|YP_004807909.1|	-	0.073	12.3	0.0	0.1	11.8	0.0	1.2	1	0	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2075)
PPV_E1_C	PF00519.17	gi|345005056|ref|YP_004807909.1|	-	0.2	10.5	0.0	0.3	9.9	0.0	1.2	1	0	0	1	1	1	0	Papillomavirus	helicase
DUF2391	PF09622.10	gi|345005057|ref|YP_004807910.1|	-	8.7e-06	25.3	1.2	1.2e-05	24.8	1.2	1.1	1	0	0	1	1	1	1	Putative	integral	membrane	protein	(DUF2391)
Acetyltransf_10	PF13673.7	gi|345005058|ref|YP_004807911.1|	-	3.9e-13	49.4	0.1	4.9e-13	49.1	0.1	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_1	PF00583.25	gi|345005058|ref|YP_004807911.1|	-	1.2e-11	44.9	0.5	1.6e-11	44.5	0.5	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
FR47	PF08445.10	gi|345005058|ref|YP_004807911.1|	-	5.3e-11	42.3	0.0	1.9e-10	40.6	0.0	1.8	2	0	0	2	2	2	1	FR47-like	protein
Acetyltransf_7	PF13508.7	gi|345005058|ref|YP_004807911.1|	-	1.1e-10	41.8	0.1	1.7e-10	41.1	0.1	1.4	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_4	PF13420.7	gi|345005058|ref|YP_004807911.1|	-	0.011	15.9	0.0	0.014	15.5	0.0	1.3	1	0	0	1	1	1	0	Acetyltransferase	(GNAT)	domain
Acetyltransf_CG	PF14542.6	gi|345005058|ref|YP_004807911.1|	-	0.043	13.9	0.0	0.079	13.1	0.0	1.5	1	0	0	1	1	1	0	GCN5-related	N-acetyl-transferase
Cys_Met_Meta_PP	PF01053.20	gi|345005059|ref|YP_004807912.1|	-	1.1e-151	504.8	0.0	1.2e-151	504.6	0.0	1.0	1	0	0	1	1	1	1	Cys/Met	metabolism	PLP-dependent	enzyme
Aminotran_1_2	PF00155.21	gi|345005059|ref|YP_004807912.1|	-	5.4e-05	22.5	0.0	7.6e-05	22.0	0.0	1.2	1	0	0	1	1	1	1	Aminotransferase	class	I	and	II
DegT_DnrJ_EryC1	PF01041.17	gi|345005059|ref|YP_004807912.1|	-	0.001	18.5	0.0	0.0081	15.5	0.0	2.2	2	1	0	2	2	2	1	DegT/DnrJ/EryC1/StrS	aminotransferase	family
Aminotran_5	PF00266.19	gi|345005059|ref|YP_004807912.1|	-	0.0015	17.6	0.0	0.0026	16.8	0.0	1.3	1	0	0	1	1	1	1	Aminotransferase	class-V
Met_gamma_lyase	PF06838.11	gi|345005059|ref|YP_004807912.1|	-	0.0054	15.3	0.0	0.0069	15.0	0.0	1.2	1	0	0	1	1	1	1	Methionine	gamma-lyase
Ribosomal_L21e	PF01157.18	gi|345005060|ref|YP_004807913.1|	-	2.5e-30	104.3	0.1	2.7e-30	104.2	0.1	1.0	1	0	0	1	1	1	1	Ribosomal	protein	L21e
RNA_pol_Rpb4	PF03874.16	gi|345005061|ref|YP_004807914.1|	-	9.3e-13	48.6	1.0	1.2e-12	48.2	1.0	1.1	1	0	0	1	1	1	1	RNA	polymerase	Rpb4
CRR7	PF12095.8	gi|345005061|ref|YP_004807914.1|	-	0.074	13.5	1.3	8.7	6.9	0.2	2.1	1	1	1	2	2	2	0	Protein	CHLORORESPIRATORY	REDUCTION	7
DUF655	PF04919.12	gi|345005062|ref|YP_004807915.1|	-	1.2e-56	191.5	0.1	1.3e-56	191.4	0.1	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF655)
HHH_3	PF12836.7	gi|345005062|ref|YP_004807915.1|	-	0.00012	22.3	0.0	0.00022	21.4	0.0	1.4	1	0	0	1	1	1	1	Helix-hairpin-helix	motif
HHH_6	PF14579.6	gi|345005062|ref|YP_004807915.1|	-	0.078	13.2	0.0	0.22	11.8	0.0	1.7	1	1	1	2	2	2	0	Helix-hairpin-helix	motif
RrnaAD	PF00398.20	gi|345005063|ref|YP_004807916.1|	-	4.9e-51	173.3	0.0	5.8e-51	173.1	0.0	1.0	1	0	0	1	1	1	1	Ribosomal	RNA	adenine	dimethylase
Methyltransf_25	PF13649.6	gi|345005063|ref|YP_004807916.1|	-	5.3e-05	23.9	0.1	0.00017	22.2	0.0	1.9	2	0	0	2	2	2	1	Methyltransferase	domain
Methyltransf_12	PF08242.12	gi|345005063|ref|YP_004807916.1|	-	0.0013	19.4	0.0	0.004	17.9	0.0	1.8	2	0	0	2	2	2	1	Methyltransferase	domain
Methyltransf_11	PF08241.12	gi|345005063|ref|YP_004807916.1|	-	0.0039	17.8	0.0	0.0099	16.5	0.0	1.7	1	0	0	1	1	1	1	Methyltransferase	domain
Glyco_hydro_4C	PF11975.8	gi|345005063|ref|YP_004807916.1|	-	0.079	13.0	0.0	0.11	12.6	0.0	1.3	1	0	0	1	1	1	0	Family	4	glycosyl	hydrolase	C-terminal	domain
Methyltransf_2	PF00891.18	gi|345005063|ref|YP_004807916.1|	-	0.14	11.5	0.0	0.24	10.7	0.0	1.3	1	0	0	1	1	1	0	O-methyltransferase	domain
Methyltransf_23	PF13489.6	gi|345005063|ref|YP_004807916.1|	-	0.16	11.8	0.0	0.19	11.5	0.0	1.3	1	0	0	1	1	1	0	Methyltransferase	domain
NodS	PF05401.11	gi|345005063|ref|YP_004807916.1|	-	0.18	11.4	0.0	0.37	10.4	0.0	1.5	2	0	0	2	2	2	0	Nodulation	protein	S	(NodS)
MS_channel	PF00924.18	gi|345005064|ref|YP_004807917.1|	-	2.1e-45	154.8	0.0	2.1e-45	154.8	0.0	1.8	3	0	0	3	3	3	1	Mechanosensitive	ion	channel
Cation_efflux	PF01545.21	gi|345005064|ref|YP_004807917.1|	-	0.64	9.7	5.6	0.47	10.2	4.0	1.6	1	1	0	1	1	1	0	Cation	efflux	family
E1-E2_ATPase	PF00122.20	gi|345005064|ref|YP_004807917.1|	-	0.75	9.3	5.7	6.6	6.2	0.0	3.0	2	1	1	3	3	3	0	E1-E2	ATPase
MTS	PF05175.14	gi|345005065|ref|YP_004807918.1|	-	1.2e-07	31.5	0.0	3.1e-06	26.8	0.0	2.1	2	0	0	2	2	2	1	Methyltransferase	small	domain
Methyltransf_25	PF13649.6	gi|345005065|ref|YP_004807918.1|	-	3.9e-06	27.5	0.0	1.3e-05	25.8	0.0	1.8	2	0	0	2	2	2	1	Methyltransferase	domain
Methyltransf_11	PF08241.12	gi|345005065|ref|YP_004807918.1|	-	3.6e-05	24.3	0.0	0.00038	21.0	0.0	2.1	2	0	0	2	2	2	1	Methyltransferase	domain
Methyltransf_23	PF13489.6	gi|345005065|ref|YP_004807918.1|	-	0.00012	22.0	0.0	0.00016	21.6	0.0	1.4	1	1	0	1	1	1	1	Methyltransferase	domain
PrmA	PF06325.13	gi|345005065|ref|YP_004807918.1|	-	0.0068	15.8	0.1	0.015	14.7	0.0	1.5	2	0	0	2	2	2	1	Ribosomal	protein	L11	methyltransferase	(PrmA)
UPF0146	PF03686.13	gi|345005065|ref|YP_004807918.1|	-	0.032	14.1	0.0	0.05	13.5	0.0	1.3	1	0	0	1	1	1	0	Uncharacterised	protein	family	(UPF0146)
Methyltransf_12	PF08242.12	gi|345005065|ref|YP_004807918.1|	-	0.051	14.3	0.0	0.14	12.9	0.0	1.7	2	0	0	2	2	2	0	Methyltransferase	domain
Methyltransf_18	PF12847.7	gi|345005065|ref|YP_004807918.1|	-	0.1	12.5	0.0	0.2	11.5	0.0	1.4	1	0	0	1	1	1	0	Methyltransferase	domain
TrkA_N	PF02254.18	gi|345005065|ref|YP_004807918.1|	-	0.16	12.3	0.0	0.29	11.4	0.0	1.4	1	0	0	1	1	1	0	TrkA-N	domain
Methyltransf_31	PF13847.6	gi|345005065|ref|YP_004807918.1|	-	0.16	11.8	0.0	0.35	10.6	0.0	1.5	2	0	0	2	2	2	0	Methyltransferase	domain
DUF938	PF06080.12	gi|345005065|ref|YP_004807918.1|	-	0.18	11.5	0.0	0.33	10.7	0.0	1.4	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF938)
Methyltransf_16	PF10294.9	gi|345005065|ref|YP_004807918.1|	-	0.21	11.3	0.0	0.3	10.8	0.0	1.2	1	0	0	1	1	1	0	Lysine	methyltransferase
Met_10	PF02475.16	gi|345005065|ref|YP_004807918.1|	-	0.22	11.2	0.0	0.33	10.7	0.0	1.2	1	0	0	1	1	1	0	Met-10+	like-protein
DUF309	PF03745.14	gi|345005066|ref|YP_004807919.1|	-	2.4e-13	49.6	0.1	3.6e-13	49.0	0.1	1.3	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF309)
Acetyltransf_7	PF13508.7	gi|345005067|ref|YP_004807920.1|	-	4.6e-05	23.8	0.0	0.17	12.3	0.1	2.3	2	0	0	2	2	2	2	Acetyltransferase	(GNAT)	domain
Acetyltransf_1	PF00583.25	gi|345005067|ref|YP_004807920.1|	-	0.04	14.1	0.1	0.17	12.1	0.0	2.0	2	0	0	2	2	2	0	Acetyltransferase	(GNAT)	family
Acetyltransf_9	PF13527.7	gi|345005067|ref|YP_004807920.1|	-	0.14	12.2	0.3	0.35	10.9	0.1	1.9	3	0	0	3	3	3	0	Acetyltransferase	(GNAT)	domain
Peptidase_M42	PF05343.14	gi|345005068|ref|YP_004807921.1|	-	1.4e-80	270.4	0.7	1.8e-80	270.1	0.7	1.0	1	0	0	1	1	1	1	M42	glutamyl	aminopeptidase
Peptidase_M20	PF01546.28	gi|345005068|ref|YP_004807921.1|	-	2.9e-09	37.0	0.5	4.7e-09	36.2	0.5	1.3	1	0	0	1	1	1	1	Peptidase	family	M20/M25/M40
Peptidase_M28	PF04389.17	gi|345005068|ref|YP_004807921.1|	-	0.00037	20.2	0.1	0.11	12.2	0.0	2.3	2	0	0	2	2	2	2	Peptidase	family	M28
AstE_AspA	PF04952.14	gi|345005069|ref|YP_004807922.1|	-	7.7e-19	67.9	0.1	1.2e-18	67.3	0.1	1.3	1	0	0	1	1	1	1	Succinylglutamate	desuccinylase	/	Aspartoacylase	family
Peptidase_M99	PF17033.5	gi|345005069|ref|YP_004807922.1|	-	0.00078	19.0	0.0	0.0011	18.5	0.0	1.4	1	0	0	1	1	1	1	Carboxypeptidase	controlling	helical	cell	shape	catalytic
SIP	PF04954.13	gi|345005069|ref|YP_004807922.1|	-	0.13	12.8	0.2	9.1	6.8	0.1	2.3	2	0	0	2	2	2	0	Siderophore-interacting	protein
LSM	PF01423.22	gi|345005070|ref|YP_004807923.1|	-	6.9e-17	60.9	0.0	8.1e-17	60.7	0.0	1.1	1	0	0	1	1	1	1	LSM	domain
SM-ATX	PF14438.6	gi|345005070|ref|YP_004807923.1|	-	6.1e-08	32.7	0.0	6.7e-08	32.6	0.0	1.0	1	0	0	1	1	1	1	Ataxin	2	SM	domain
Hfq	PF17209.3	gi|345005070|ref|YP_004807923.1|	-	0.015	14.9	0.0	0.03	14.0	0.0	1.5	2	0	0	2	2	2	0	Hfq	protein
Ribosomal_L37e	PF01907.19	gi|345005071|ref|YP_004807924.1|	-	8.5e-22	77.1	14.8	9.2e-22	77.0	14.8	1.0	1	0	0	1	1	1	1	Ribosomal	protein	L37e
HypA	PF01155.19	gi|345005071|ref|YP_004807924.1|	-	0.15	12.1	3.2	0.18	11.8	3.2	1.1	1	0	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
zinc_ribbon_2	PF13240.6	gi|345005071|ref|YP_004807924.1|	-	0.5	10.2	7.7	1	9.2	1.0	2.1	1	1	1	2	2	2	0	zinc-ribbon	domain
YhfH	PF14149.6	gi|345005071|ref|YP_004807924.1|	-	0.82	9.7	9.1	1.2	9.2	1.5	2.2	1	1	1	2	2	2	0	YhfH-like	protein
OrfB_Zn_ribbon	PF07282.11	gi|345005071|ref|YP_004807924.1|	-	1.4	8.9	8.8	1.9	8.5	8.0	1.5	1	1	1	2	2	2	0	Putative	transposase	DNA-binding	domain
DUF2688	PF10892.8	gi|345005071|ref|YP_004807924.1|	-	6.5	6.3	8.8	0.27	10.7	2.2	1.8	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF2688)
GATase_6	PF13522.6	gi|345005072|ref|YP_004807925.1|	-	1.2e-21	77.4	0.1	3.2e-21	75.9	0.1	1.7	1	0	0	1	1	1	1	Glutamine	amidotransferase	domain
GATase_7	PF13537.6	gi|345005072|ref|YP_004807925.1|	-	1.1e-20	73.8	0.0	2e-20	72.9	0.0	1.4	1	0	0	1	1	1	1	Glutamine	amidotransferase	domain
Pribosyltran	PF00156.27	gi|345005072|ref|YP_004807925.1|	-	9.2e-07	28.5	0.0	1.9e-06	27.5	0.0	1.5	1	0	0	1	1	1	1	Phosphoribosyl	transferase	domain
GATase_4	PF13230.6	gi|345005072|ref|YP_004807925.1|	-	0.00013	21.0	0.0	0.0002	20.4	0.0	1.2	1	0	0	1	1	1	1	Glutamine	amidotransferases	class-II
DUF420	PF04238.12	gi|345005073|ref|YP_004807926.1|	-	5.7e-38	130.2	6.8	5.7e-38	130.2	6.8	1.8	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF420)
DUF2306	PF10067.9	gi|345005073|ref|YP_004807926.1|	-	0.0011	19.2	8.8	0.0022	18.2	3.4	2.5	1	1	1	2	2	2	1	Predicted	membrane	protein	(DUF2306)
Amastin	PF07344.11	gi|345005073|ref|YP_004807926.1|	-	0.0085	16.0	2.0	0.0085	16.0	2.0	1.8	2	1	0	2	2	2	1	Amastin	surface	glycoprotein
DUF5389	PF17364.2	gi|345005073|ref|YP_004807926.1|	-	0.72	9.9	7.8	0.06	13.4	1.6	2.1	2	1	0	2	2	2	0	Family	of	unknown	function	(DUF5389)
Cytochrom_B561	PF03188.16	gi|345005073|ref|YP_004807926.1|	-	2.9	8.0	10.5	4.1	7.5	1.6	2.6	2	1	1	3	3	3	0	Eukaryotic	cytochrome	b561
DUF4149	PF13664.6	gi|345005073|ref|YP_004807926.1|	-	3.8	7.9	11.9	0.46	10.8	1.1	2.8	2	1	1	3	3	3	0	Domain	of	unknown	function	(DUF4149)
Ribosomal_60s	PF00428.19	gi|345005074|ref|YP_004807927.1|	-	4.2e-13	49.7	30.9	2.1e-11	44.2	30.9	2.0	1	1	0	1	1	1	1	60s	Acidic	ribosomal	protein
RRN3	PF05327.11	gi|345005074|ref|YP_004807927.1|	-	0.0005	18.7	2.8	0.00058	18.5	2.8	1.0	1	0	0	1	1	1	1	RNA	polymerase	I	specific	transcription	initiation	factor	RRN3
NOA36	PF06524.12	gi|345005074|ref|YP_004807927.1|	-	0.24	10.7	10.7	0.27	10.5	10.7	1.1	1	0	0	1	1	1	0	NOA36	protein
Cwf_Cwc_15	PF04889.12	gi|345005074|ref|YP_004807927.1|	-	0.25	11.0	7.4	0.27	10.9	7.4	1.2	1	0	0	1	1	1	0	Cwf15/Cwc15	cell	cycle	control	protein
DNA_pol_phi	PF04931.13	gi|345005074|ref|YP_004807927.1|	-	0.46	8.5	10.4	0.42	8.6	10.4	1.1	1	0	0	1	1	1	0	DNA	polymerase	phi
Myc_N	PF01056.18	gi|345005074|ref|YP_004807927.1|	-	1.2	9.0	3.0	1.3	8.9	3.0	1.1	1	0	0	1	1	1	0	Myc	amino-terminal	region
BUD22	PF09073.10	gi|345005074|ref|YP_004807927.1|	-	1.6	8.0	7.8	1.7	7.9	7.8	1.1	1	0	0	1	1	1	0	BUD22
PPP4R2	PF09184.11	gi|345005074|ref|YP_004807927.1|	-	1.9	8.0	7.7	2	7.9	7.7	1.1	1	0	0	1	1	1	0	PPP4R2
Sigma70_ner	PF04546.13	gi|345005074|ref|YP_004807927.1|	-	3.5	7.4	11.5	4.3	7.2	11.5	1.2	1	0	0	1	1	1	0	Sigma-70,	non-essential	region
CDC45	PF02724.14	gi|345005074|ref|YP_004807927.1|	-	3.8	5.7	5.6	4	5.6	5.6	1.1	1	0	0	1	1	1	0	CDC45-like	protein
DUF2457	PF10446.9	gi|345005074|ref|YP_004807927.1|	-	8	5.5	12.4	8.3	5.4	12.4	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2457)
Ribosomal_L10	PF00466.20	gi|345005075|ref|YP_004807928.1|	-	8.4e-21	74.0	0.0	1.5e-20	73.1	0.0	1.4	1	0	0	1	1	1	1	Ribosomal	protein	L10
RL10P_insert	PF17777.1	gi|345005075|ref|YP_004807928.1|	-	7.4e-15	54.7	0.0	1.4e-14	53.8	0.0	1.5	1	0	0	1	1	1	1	Insertion	domain	in	60S	ribosomal	protein	L10P
BUD22	PF09073.10	gi|345005075|ref|YP_004807928.1|	-	0.032	13.6	3.1	0.049	13.0	3.1	1.3	1	0	0	1	1	1	0	BUD22
RNA_pol_3_Rpc31	PF11705.8	gi|345005075|ref|YP_004807928.1|	-	0.64	10.2	10.2	0.99	9.6	10.2	1.5	1	0	0	1	1	1	0	DNA-directed	RNA	polymerase	III	subunit	Rpc31
Cwf_Cwc_15	PF04889.12	gi|345005075|ref|YP_004807928.1|	-	1.4	8.6	11.0	2.2	7.9	11.0	1.3	1	0	0	1	1	1	0	Cwf15/Cwc15	cell	cycle	control	protein
Mis14	PF08641.12	gi|345005075|ref|YP_004807928.1|	-	2.3	8.5	8.8	7.3	6.9	8.8	1.9	1	1	0	1	1	1	0	Kinetochore	protein	Mis14	like
DNA_pol_phi	PF04931.13	gi|345005075|ref|YP_004807928.1|	-	9.7	4.1	17.1	14	3.6	17.1	1.1	1	0	0	1	1	1	0	DNA	polymerase	phi
Ribosomal_L1	PF00687.21	gi|345005076|ref|YP_004807929.1|	-	3.5e-43	147.7	0.0	4.2e-43	147.5	0.0	1.0	1	0	0	1	1	1	1	Ribosomal	protein	L1p/L10e	family
DNA_primase_S	PF01896.19	gi|345005077|ref|YP_004807930.1|	-	4.7e-21	75.6	0.0	6.9e-21	75.1	0.0	1.2	1	0	0	1	1	1	1	DNA	primase	small	subunit
HHH_5	PF14520.6	gi|345005077|ref|YP_004807930.1|	-	0.15	12.7	0.6	2	9.1	0.0	2.7	2	1	1	3	3	3	0	Helix-hairpin-helix	domain
AhpC-TSA	PF00578.21	gi|345005079|ref|YP_004807932.1|	-	6e-35	119.9	0.0	7e-35	119.7	0.0	1.0	1	0	0	1	1	1	1	AhpC/TSA	family
Redoxin	PF08534.10	gi|345005079|ref|YP_004807932.1|	-	5.6e-25	87.8	0.0	6.4e-25	87.6	0.0	1.0	1	0	0	1	1	1	1	Redoxin
SCO1-SenC	PF02630.14	gi|345005079|ref|YP_004807932.1|	-	1e-05	25.5	0.1	1.5e-05	24.9	0.1	1.4	1	1	0	1	1	1	1	SCO1/SenC
AhpC-TSA_2	PF13911.6	gi|345005079|ref|YP_004807932.1|	-	0.00043	20.4	0.0	0.0014	18.7	0.0	1.7	1	1	1	2	2	2	1	AhpC/TSA	antioxidant	enzyme
DUF899	PF05988.12	gi|345005079|ref|YP_004807932.1|	-	0.00051	19.6	0.0	0.00062	19.4	0.0	1.1	1	0	0	1	1	1	1	Bacterial	protein	of	unknown	function	(DUF899)
PDZ_1	PF12812.7	gi|345005079|ref|YP_004807932.1|	-	0.12	12.4	0.0	0.22	11.5	0.0	1.4	1	0	0	1	1	1	0	PDZ-like	domain
EamA	PF00892.20	gi|345005080|ref|YP_004807933.1|	-	3.8e-32	111.3	34.3	7.1e-17	61.9	11.2	2.0	2	0	0	2	2	2	2	EamA-like	transporter	family
polyprenyl_synt	PF00348.17	gi|345005082|ref|YP_004807935.1|	-	5.5e-60	202.6	0.0	6.8e-60	202.3	0.0	1.1	1	0	0	1	1	1	1	Polyprenyl	synthetase
Lactamase_B_2	PF12706.7	gi|345005083|ref|YP_004807936.1|	-	2.2e-10	40.4	1.1	5.7e-08	32.5	0.2	2.5	3	0	0	3	3	3	2	Beta-lactamase	superfamily	domain
Lactamase_B	PF00753.27	gi|345005083|ref|YP_004807936.1|	-	2.7e-07	30.8	2.6	1.3e-06	28.6	2.5	2.0	1	1	0	1	1	1	1	Metallo-beta-lactamase	superfamily
RMMBL	PF07521.12	gi|345005083|ref|YP_004807936.1|	-	2.8e-05	24.0	0.2	0.0013	18.6	0.0	2.9	2	0	0	2	2	2	1	Zn-dependent	metallo-hydrolase	RNA	specificity	domain
DUF63	PF01889.17	gi|345005084|ref|YP_004807937.1|	-	4.1e-44	151.8	7.3	7.3e-44	151.0	7.3	1.4	1	0	0	1	1	1	1	Membrane	protein	of	unknown	function	DUF63
Tetraspanin	PF00335.20	gi|345005084|ref|YP_004807937.1|	-	0.37	10.5	3.3	0.8	9.4	3.3	1.6	1	0	0	1	1	1	0	Tetraspanin	family
RsgI_N	PF12791.7	gi|345005085|ref|YP_004807938.1|	-	0.071	13.0	0.2	1.5	8.8	0.1	2.3	2	0	0	2	2	2	0	Anti-sigma	factor	N-terminus
DUF3824	PF12868.7	gi|345005085|ref|YP_004807938.1|	-	0.19	12.4	1.4	0.28	11.9	1.4	1.2	1	0	0	1	1	1	0	Domain	of	unknwon	function	(DUF3824)
HTH_AsnC-type	PF13404.6	gi|345005086|ref|YP_004807939.1|	-	2.5e-17	62.4	0.7	5.6e-17	61.3	0.7	1.6	1	0	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
AsnC_trans_reg	PF01037.21	gi|345005086|ref|YP_004807939.1|	-	2.6e-17	62.5	0.1	4e-17	61.9	0.1	1.3	1	0	0	1	1	1	1	Lrp/AsnC	ligand	binding	domain
HTH_24	PF13412.6	gi|345005086|ref|YP_004807939.1|	-	6.7e-17	60.8	0.0	1.1e-16	60.1	0.0	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_20	PF12840.7	gi|345005086|ref|YP_004807939.1|	-	9.4e-07	28.8	0.3	7.2e-06	26.0	0.0	2.1	2	0	0	2	2	2	1	Helix-turn-helix	domain
MarR_2	PF12802.7	gi|345005086|ref|YP_004807939.1|	-	6.9e-05	22.7	0.2	0.00023	21.0	0.1	1.9	2	0	0	2	2	2	1	MarR	family
MarR	PF01047.22	gi|345005086|ref|YP_004807939.1|	-	7.1e-05	22.7	0.0	0.00012	21.9	0.0	1.4	1	0	0	1	1	1	1	MarR	family
HTH_IclR	PF09339.10	gi|345005086|ref|YP_004807939.1|	-	0.00018	21.3	0.0	0.00054	19.7	0.0	1.7	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
HTH_27	PF13463.6	gi|345005086|ref|YP_004807939.1|	-	0.0051	17.3	0.1	0.012	16.1	0.1	1.7	2	0	0	2	2	2	1	Winged	helix	DNA-binding	domain
HTH_1	PF00126.27	gi|345005086|ref|YP_004807939.1|	-	0.033	14.1	0.0	0.31	11.0	0.0	2.2	2	0	0	2	2	2	0	Bacterial	regulatory	helix-turn-helix	protein,	lysR	family
Fe_dep_repress	PF01325.19	gi|345005086|ref|YP_004807939.1|	-	0.036	14.3	0.0	0.06	13.6	0.0	1.3	1	0	0	1	1	1	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_11	PF08279.12	gi|345005086|ref|YP_004807939.1|	-	0.038	13.9	0.0	0.06	13.3	0.0	1.3	1	0	0	1	1	1	0	HTH	domain
HTH_5	PF01022.20	gi|345005086|ref|YP_004807939.1|	-	0.078	12.9	0.0	0.12	12.2	0.0	1.3	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
TrmB	PF01978.19	gi|345005086|ref|YP_004807939.1|	-	0.082	12.8	0.0	0.2	11.6	0.0	1.6	2	0	0	2	2	2	0	Sugar-specific	transcriptional	regulator	TrmB
Inositol_P	PF00459.25	gi|345005087|ref|YP_004807940.1|	-	1.6e-46	159.0	5.0	2e-46	158.7	5.0	1.0	1	0	0	1	1	1	1	Inositol	monophosphatase	family
Mito_carr	PF00153.27	gi|345005087|ref|YP_004807940.1|	-	0.15	11.9	0.0	0.24	11.3	0.0	1.4	1	0	0	1	1	1	0	Mitochondrial	carrier	protein
SWC7	PF17330.2	gi|345005087|ref|YP_004807940.1|	-	0.21	11.6	0.0	0.36	10.9	0.0	1.3	1	0	0	1	1	1	0	SWR1	chromatin-remodelling	complex,	sub-unit	Swc7
DUF1440	PF07274.12	gi|345005089|ref|YP_004807942.1|	-	0.21	11.9	4.5	0.39	11.0	3.5	2.0	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF1440)
HATPase_c	PF02518.26	gi|345005090|ref|YP_004807943.1|	-	7.3e-17	61.9	0.0	1.2e-16	61.2	0.0	1.3	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HisKA_7TM	PF16927.5	gi|345005090|ref|YP_004807943.1|	-	2.2e-15	57.3	17.8	3e-15	56.9	17.8	1.1	1	0	0	1	1	1	1	N-terminal	7TM	region	of	histidine	kinase
HisKA	PF00512.25	gi|345005090|ref|YP_004807943.1|	-	3.4e-10	39.8	1.5	4.7e-10	39.4	0.7	1.7	2	0	0	2	2	2	1	His	Kinase	A	(phospho-acceptor)	domain
HATPase_c_2	PF13581.6	gi|345005090|ref|YP_004807943.1|	-	0.0018	18.2	0.0	0.0038	17.2	0.0	1.5	1	0	0	1	1	1	1	Histidine	kinase-like	ATPase	domain
HATPase_c_3	PF13589.6	gi|345005090|ref|YP_004807943.1|	-	0.024	14.5	0.0	0.05	13.4	0.0	1.5	1	0	0	1	1	1	0	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
ABC_cobalt	PF09819.9	gi|345005091|ref|YP_004807944.1|	-	0.31	11.2	19.8	0.73	10.0	18.0	2.1	1	1	1	2	2	2	0	ABC-type	cobalt	transport	system,	permease	component
DUF1440	PF07274.12	gi|345005091|ref|YP_004807944.1|	-	0.53	10.6	9.7	0.11	12.8	3.1	2.5	2	1	1	3	3	3	0	Protein	of	unknown	function	(DUF1440)
CBS	PF00571.28	gi|345005092|ref|YP_004807945.1|	-	1.5e-35	121.4	12.6	2.1e-11	44.1	0.1	4.3	4	0	0	4	4	4	4	CBS	domain
Ribosomal_S30AE	PF02482.19	gi|345005092|ref|YP_004807945.1|	-	0.023	15.5	0.0	0.18	12.6	0.0	2.4	1	1	1	2	2	2	0	Sigma	54	modulation	protein	/	S30EA	ribosomal	protein
Rad51	PF08423.11	gi|345005093|ref|YP_004807946.1|	-	7.5e-26	90.9	0.0	9.5e-26	90.6	0.0	1.0	1	0	0	1	1	1	1	Rad51
AAA_25	PF13481.6	gi|345005093|ref|YP_004807946.1|	-	2.2e-12	47.0	0.0	3.3e-12	46.4	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
RecA	PF00154.21	gi|345005093|ref|YP_004807946.1|	-	2.2e-09	37.1	0.1	4.1e-09	36.3	0.1	1.5	1	1	0	1	1	1	1	recA	bacterial	DNA	recombination	protein
ATPase	PF06745.13	gi|345005093|ref|YP_004807946.1|	-	2.6e-08	33.5	0.0	6.2e-08	32.3	0.0	1.7	1	1	0	1	1	1	1	KaiC
Zot	PF05707.12	gi|345005093|ref|YP_004807946.1|	-	5.6e-08	32.6	0.0	7.3e-08	32.3	0.0	1.1	1	0	0	1	1	1	1	Zonular	occludens	toxin	(Zot)
AAA_24	PF13479.6	gi|345005093|ref|YP_004807946.1|	-	1.3e-07	31.6	0.0	8.5e-07	28.9	0.0	1.9	2	0	0	2	2	2	1	AAA	domain
AAA_16	PF13191.6	gi|345005093|ref|YP_004807946.1|	-	0.0031	17.9	0.1	0.0044	17.4	0.1	1.1	1	0	0	1	1	1	1	AAA	ATPase	domain
DnaB_C	PF03796.15	gi|345005093|ref|YP_004807946.1|	-	0.0059	16.0	0.0	0.025	13.9	0.0	1.9	1	1	1	2	2	2	1	DnaB-like	helicase	C	terminal	domain
ATPase_2	PF01637.18	gi|345005093|ref|YP_004807946.1|	-	0.026	14.4	0.0	0.031	14.2	0.0	1.2	1	0	0	1	1	1	0	ATPase	domain	predominantly	from	Archaea
TSA	PF03249.13	gi|345005093|ref|YP_004807946.1|	-	0.081	11.7	0.0	0.11	11.3	0.0	1.1	1	0	0	1	1	1	0	Type	specific	antigen
DUF111	PF01969.17	gi|345005094|ref|YP_004807947.1|	-	8.4e-126	420.0	1.0	9.7e-126	419.8	1.0	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF111
Fer2_4	PF13510.6	gi|345005094|ref|YP_004807947.1|	-	0.054	13.5	0.2	1.2	9.2	0.1	2.6	2	0	0	2	2	2	0	2Fe-2S	iron-sulfur	cluster	binding	domain
Zip	PF02535.22	gi|345005094|ref|YP_004807947.1|	-	0.072	12.3	0.9	0.1	11.8	0.9	1.2	1	0	0	1	1	1	0	ZIP	Zinc	transporter
SelP_N	PF04592.14	gi|345005094|ref|YP_004807947.1|	-	0.49	9.7	11.4	1.6	8.1	11.7	1.6	2	0	0	2	2	2	0	Selenoprotein	P,	N	terminal	region
AAA	PF00004.29	gi|345005095|ref|YP_004807948.1|	-	2e-100	332.4	0.0	4.2e-49	166.4	0.0	2.4	2	0	0	2	2	2	2	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_lid_3	PF17862.1	gi|345005095|ref|YP_004807948.1|	-	1.9e-31	107.6	1.6	1.6e-16	59.8	1.0	2.6	2	0	0	2	2	2	2	AAA+	lid	domain
CDC48_N	PF02359.18	gi|345005095|ref|YP_004807948.1|	-	8.3e-31	106.0	0.0	6.1e-30	103.2	0.1	2.4	3	0	0	3	3	1	1	Cell	division	protein	48	(CDC48),	N-terminal	domain
CDC48_2	PF02933.17	gi|345005095|ref|YP_004807948.1|	-	1.2e-16	60.2	0.1	7.7e-16	57.6	0.1	2.3	2	0	0	2	2	2	1	Cell	division	protein	48	(CDC48),	domain	2
RuvB_N	PF05496.12	gi|345005095|ref|YP_004807948.1|	-	2.1e-15	56.8	0.0	8.7e-07	28.8	0.0	2.8	2	1	0	2	2	2	2	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
AAA_16	PF13191.6	gi|345005095|ref|YP_004807948.1|	-	1.2e-14	55.0	1.0	7.2e-06	26.5	0.3	4.1	2	2	1	3	3	3	2	AAA	ATPase	domain
AAA_5	PF07728.14	gi|345005095|ref|YP_004807948.1|	-	2.2e-14	53.6	1.5	3.2e-06	27.2	0.1	4.1	3	2	0	3	3	2	2	AAA	domain	(dynein-related	subfamily)
AAA_2	PF07724.14	gi|345005095|ref|YP_004807948.1|	-	2.8e-13	50.3	0.0	3.6e-05	24.0	0.0	2.6	2	0	0	2	2	2	2	AAA	domain	(Cdc48	subfamily)
TIP49	PF06068.13	gi|345005095|ref|YP_004807948.1|	-	1.3e-11	44.4	0.0	4e-05	23.0	0.0	3.1	3	0	0	3	3	3	2	TIP49	P-loop	domain
AAA_22	PF13401.6	gi|345005095|ref|YP_004807948.1|	-	6.8e-11	42.6	0.9	0.0016	18.7	0.1	4.2	2	2	2	4	4	4	2	AAA	domain
AAA_33	PF13671.6	gi|345005095|ref|YP_004807948.1|	-	1.6e-10	41.3	0.0	0.00011	22.4	0.0	2.5	2	0	0	2	2	2	2	AAA	domain
IstB_IS21	PF01695.17	gi|345005095|ref|YP_004807948.1|	-	7.2e-08	32.4	0.0	0.015	15.0	0.0	2.3	2	0	0	2	2	2	2	IstB-like	ATP	binding	protein
AAA_14	PF13173.6	gi|345005095|ref|YP_004807948.1|	-	1.2e-07	31.8	0.0	0.0083	16.2	0.0	2.6	3	0	0	3	3	2	2	AAA	domain
AAA_18	PF13238.6	gi|345005095|ref|YP_004807948.1|	-	2.1e-07	31.6	0.0	0.033	14.7	0.0	2.9	2	0	0	2	2	2	2	AAA	domain
Sigma54_activat	PF00158.26	gi|345005095|ref|YP_004807948.1|	-	3.7e-07	30.0	0.2	0.034	13.9	0.0	3.5	3	1	0	3	3	2	2	Sigma-54	interaction	domain
RNA_helicase	PF00910.22	gi|345005095|ref|YP_004807948.1|	-	6.5e-07	29.7	0.0	0.065	13.6	0.0	2.6	2	0	0	2	2	2	2	RNA	helicase
Mg_chelatase	PF01078.21	gi|345005095|ref|YP_004807948.1|	-	1.2e-06	28.1	0.1	0.051	12.9	0.0	2.5	2	0	0	2	2	2	2	Magnesium	chelatase,	subunit	ChlI
AAA_7	PF12775.7	gi|345005095|ref|YP_004807948.1|	-	1.4e-06	27.9	0.0	0.029	13.9	0.0	2.4	2	0	0	2	2	2	2	P-loop	containing	dynein	motor	region
ATPase	PF06745.13	gi|345005095|ref|YP_004807948.1|	-	1.9e-06	27.4	0.4	0.11	11.8	0.0	3.5	3	0	0	3	3	3	2	KaiC
AAA_3	PF07726.11	gi|345005095|ref|YP_004807948.1|	-	3.7e-06	26.8	0.0	0.046	13.6	0.0	2.5	2	0	0	2	2	2	2	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_28	PF13521.6	gi|345005095|ref|YP_004807948.1|	-	1.1e-05	25.7	0.0	0.038	14.2	0.0	2.6	2	0	0	2	2	2	2	AAA	domain
PhoH	PF02562.16	gi|345005095|ref|YP_004807948.1|	-	1.4e-05	24.7	0.2	0.43	10.0	0.0	3.4	3	0	0	3	3	3	2	PhoH-like	protein
DUF815	PF05673.13	gi|345005095|ref|YP_004807948.1|	-	1.5e-05	24.3	0.0	0.11	11.6	0.0	2.4	2	0	0	2	2	2	2	Protein	of	unknown	function	(DUF815)
TsaE	PF02367.17	gi|345005095|ref|YP_004807948.1|	-	2.2e-05	24.4	0.0	0.18	11.8	0.0	2.4	2	0	0	2	2	2	2	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
ABC_tran	PF00005.27	gi|345005095|ref|YP_004807948.1|	-	2.4e-05	24.9	0.0	0.39	11.2	0.0	2.7	2	0	0	2	2	2	2	ABC	transporter
AAA_24	PF13479.6	gi|345005095|ref|YP_004807948.1|	-	2.7e-05	24.0	0.0	0.098	12.4	0.0	2.6	2	0	0	2	2	2	2	AAA	domain
AAA_11	PF13086.6	gi|345005095|ref|YP_004807948.1|	-	3.5e-05	23.7	0.0	0.31	10.8	0.0	2.4	2	0	0	2	2	2	2	AAA	domain
AAA_25	PF13481.6	gi|345005095|ref|YP_004807948.1|	-	5.1e-05	22.9	3.5	1.8	8.1	0.1	4.3	3	1	0	4	4	4	1	AAA	domain
Zeta_toxin	PF06414.12	gi|345005095|ref|YP_004807948.1|	-	5.7e-05	22.5	0.3	0.089	12.1	0.0	2.5	2	0	0	2	2	2	2	Zeta	toxin
ATPase_2	PF01637.18	gi|345005095|ref|YP_004807948.1|	-	6.5e-05	23.0	0.0	1.2	9.0	0.0	3.9	2	2	1	3	3	3	1	ATPase	domain	predominantly	from	Archaea
Vps4_C	PF09336.10	gi|345005095|ref|YP_004807948.1|	-	8.3e-05	22.5	2.6	0.01	15.8	0.1	3.1	3	0	0	3	3	2	1	Vps4	C	terminal	oligomerisation	domain
AAA_30	PF13604.6	gi|345005095|ref|YP_004807948.1|	-	8.5e-05	22.4	0.2	0.51	10.0	0.0	2.8	2	0	0	2	2	2	2	AAA	domain
NB-ARC	PF00931.22	gi|345005095|ref|YP_004807948.1|	-	0.0001	21.6	0.0	0.12	11.5	0.0	2.4	2	0	0	2	2	2	2	NB-ARC	domain
NACHT	PF05729.12	gi|345005095|ref|YP_004807948.1|	-	0.00033	20.6	0.7	0.56	10.1	0.0	3.3	4	0	0	4	4	3	1	NACHT	domain
Parvo_NS1	PF01057.17	gi|345005095|ref|YP_004807948.1|	-	0.00038	19.6	0.1	0.47	9.5	0.0	2.2	2	0	0	2	2	2	2	Parvovirus	non-structural	protein	NS1
Sigma54_activ_2	PF14532.6	gi|345005095|ref|YP_004807948.1|	-	0.00045	20.4	0.0	0.81	9.8	0.0	2.6	2	0	0	2	2	2	1	Sigma-54	interaction	domain
AAA_17	PF13207.6	gi|345005095|ref|YP_004807948.1|	-	0.00045	20.6	0.0	0.85	10.0	0.0	3.5	3	0	0	3	3	2	1	AAA	domain
DUF2075	PF09848.9	gi|345005095|ref|YP_004807948.1|	-	0.00052	19.4	0.0	0.44	9.7	0.0	2.3	2	0	0	2	2	2	2	Uncharacterized	conserved	protein	(DUF2075)
IPT	PF01745.16	gi|345005095|ref|YP_004807948.1|	-	0.0014	18.1	0.6	0.42	9.9	0.0	2.7	3	0	0	3	3	3	1	Isopentenyl	transferase
AAA_19	PF13245.6	gi|345005095|ref|YP_004807948.1|	-	0.0018	18.6	0.7	2.5	8.4	0.0	2.8	2	1	0	2	2	2	1	AAA	domain
NTPase_1	PF03266.15	gi|345005095|ref|YP_004807948.1|	-	0.0031	17.5	0.8	3.8	7.4	0.0	3.6	3	1	0	3	3	2	0	NTPase
KAP_NTPase	PF07693.14	gi|345005095|ref|YP_004807948.1|	-	0.0034	16.7	0.1	3.5	6.8	0.1	3.3	2	2	0	4	4	4	0	KAP	family	P-loop	domain
Bac_DnaA	PF00308.18	gi|345005095|ref|YP_004807948.1|	-	0.0042	16.9	0.0	2.9	7.7	0.0	2.7	2	0	0	2	2	2	1	Bacterial	dnaA	protein
ResIII	PF04851.15	gi|345005095|ref|YP_004807948.1|	-	0.0073	16.3	0.0	4.6	7.2	0.0	2.6	2	1	0	2	2	2	0	Type	III	restriction	enzyme,	res	subunit
Cytidylate_kin	PF02224.18	gi|345005095|ref|YP_004807948.1|	-	0.0077	16.0	0.1	4.4	7.0	0.0	2.4	2	0	0	2	2	2	0	Cytidylate	kinase
Rad17	PF03215.15	gi|345005095|ref|YP_004807948.1|	-	0.0095	15.9	0.0	1.8	8.5	0.0	2.7	2	1	0	3	3	2	1	Rad17	P-loop	domain
AFG1_ATPase	PF03969.16	gi|345005095|ref|YP_004807948.1|	-	0.016	14.1	0.0	1.5	7.7	0.0	2.2	2	0	0	2	2	2	0	AFG1-like	ATPase
Viral_helicase1	PF01443.18	gi|345005095|ref|YP_004807948.1|	-	0.026	14.3	0.0	2.2	8.0	0.0	2.2	2	0	0	2	2	2	0	Viral	(Superfamily	1)	RNA	helicase
Guanylate_kin	PF00625.21	gi|345005095|ref|YP_004807948.1|	-	0.026	14.2	0.3	33	4.1	0.0	3.7	3	1	1	4	4	3	0	Guanylate	kinase
Zot	PF05707.12	gi|345005095|ref|YP_004807948.1|	-	0.026	14.2	0.0	3.8	7.1	0.0	2.5	2	0	0	2	2	2	0	Zonular	occludens	toxin	(Zot)
Hydin_ADK	PF17213.3	gi|345005095|ref|YP_004807948.1|	-	0.027	14.8	0.5	5.2	7.3	0.0	2.7	3	0	0	3	3	2	0	Hydin	Adenylate	kinase-like	domain
CPT	PF07931.12	gi|345005095|ref|YP_004807948.1|	-	0.032	14.1	0.0	4	7.2	0.0	2.4	2	0	0	2	2	2	0	Chloramphenicol	phosphotransferase-like	protein
Torsin	PF06309.11	gi|345005095|ref|YP_004807948.1|	-	0.053	13.6	0.0	4.5	7.4	0.0	2.4	2	0	0	2	2	2	0	Torsin
T2SSE	PF00437.20	gi|345005095|ref|YP_004807948.1|	-	0.079	12.0	0.0	8.4	5.4	0.0	2.4	2	0	0	2	2	2	0	Type	II/IV	secretion	system	protein
SKI	PF01202.22	gi|345005095|ref|YP_004807948.1|	-	0.09	12.9	0.0	19	5.3	0.0	2.5	2	0	0	2	2	2	0	Shikimate	kinase
MCM	PF00493.23	gi|345005095|ref|YP_004807948.1|	-	0.14	11.3	0.0	7.1	5.6	0.0	2.5	3	0	0	3	3	2	0	MCM	P-loop	domain
Aldo_ket_red	PF00248.21	gi|345005096|ref|YP_004807949.1|	-	5.6e-58	196.4	0.0	6.3e-57	193.0	0.0	1.9	1	1	0	1	1	1	1	Aldo/keto	reductase	family
DUF2237	PF09996.9	gi|345005097|ref|YP_004807950.1|	-	8.2e-49	164.4	0.0	9.2e-49	164.2	0.0	1.0	1	0	0	1	1	1	1	Uncharacterized	protein	conserved	in	bacteria	(DUF2237)
PhoU	PF01895.19	gi|345005098|ref|YP_004807951.1|	-	1.4e-33	115.2	9.0	9.8e-19	67.6	0.2	2.1	2	0	0	2	2	2	2	PhoU	domain
Lectin_N	PF03954.14	gi|345005098|ref|YP_004807951.1|	-	0.1	12.4	0.1	1.1	9.0	0.0	2.1	2	0	0	2	2	2	0	Hepatic	lectin,	N-terminal	domain
ABC_tran	PF00005.27	gi|345005099|ref|YP_004807952.1|	-	4.4e-30	105.0	0.0	7.8e-30	104.2	0.0	1.4	1	0	0	1	1	1	1	ABC	transporter
SMC_N	PF02463.19	gi|345005099|ref|YP_004807952.1|	-	5.5e-08	32.5	0.2	1.2e-06	28.1	0.2	2.1	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_21	PF13304.6	gi|345005099|ref|YP_004807952.1|	-	7.3e-08	32.6	0.0	0.0016	18.3	0.0	2.2	1	1	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_15	PF13175.6	gi|345005099|ref|YP_004807952.1|	-	0.00044	20.1	0.0	0.035	13.8	0.0	2.1	2	0	0	2	2	2	1	AAA	ATPase	domain
RsgA_GTPase	PF03193.16	gi|345005099|ref|YP_004807952.1|	-	0.00066	19.6	0.0	0.0017	18.3	0.0	1.6	2	0	0	2	2	2	1	RsgA	GTPase
AAA_25	PF13481.6	gi|345005099|ref|YP_004807952.1|	-	0.0025	17.4	0.1	0.48	10.0	0.0	2.3	2	0	0	2	2	2	1	AAA	domain
Rad17	PF03215.15	gi|345005099|ref|YP_004807952.1|	-	0.0032	17.4	0.0	0.0053	16.7	0.0	1.3	1	0	0	1	1	1	1	Rad17	P-loop	domain
AAA_30	PF13604.6	gi|345005099|ref|YP_004807952.1|	-	0.004	16.9	0.1	0.41	10.3	0.0	2.2	2	0	0	2	2	2	1	AAA	domain
AAA_23	PF13476.6	gi|345005099|ref|YP_004807952.1|	-	0.0041	17.6	0.0	0.01	16.3	0.0	1.6	2	0	0	2	2	2	1	AAA	domain
AAA_22	PF13401.6	gi|345005099|ref|YP_004807952.1|	-	0.0041	17.4	0.0	0.012	15.9	0.0	1.8	1	1	0	1	1	1	1	AAA	domain
AAA_29	PF13555.6	gi|345005099|ref|YP_004807952.1|	-	0.012	15.3	0.0	0.03	14.1	0.0	1.6	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
AAA_33	PF13671.6	gi|345005099|ref|YP_004807952.1|	-	0.023	14.9	0.1	0.052	13.7	0.1	2.0	1	1	0	1	1	1	0	AAA	domain
AAA_16	PF13191.6	gi|345005099|ref|YP_004807952.1|	-	0.029	14.8	0.1	0.09	13.2	0.1	1.9	1	1	0	1	1	1	0	AAA	ATPase	domain
DeoRC	PF00455.22	gi|345005099|ref|YP_004807952.1|	-	0.032	14.2	0.0	0.052	13.5	0.0	1.3	1	0	0	1	1	1	0	DeoR	C	terminal	sensor	domain
Adeno_IVa2	PF02456.15	gi|345005099|ref|YP_004807952.1|	-	0.12	11.2	0.0	0.88	8.3	0.0	2.0	2	0	0	2	2	2	0	Adenovirus	IVa2	protein
BPD_transp_1	PF00528.22	gi|345005100|ref|YP_004807953.1|	-	7.9e-22	77.9	16.3	7.9e-22	77.9	16.3	4.9	2	2	2	4	4	4	1	Binding-protein-dependent	transport	system	inner	membrane	component
BPD_transp_1	PF00528.22	gi|345005101|ref|YP_004807954.1|	-	1.1e-16	61.1	14.8	1.1e-16	61.1	14.8	2.5	2	2	0	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
Sigma_reg_N	PF13800.6	gi|345005101|ref|YP_004807954.1|	-	1.7	9.0	3.7	17	5.8	0.0	3.3	3	0	0	3	3	3	0	Sigma	factor	regulator	N-terminal
PBP_like_2	PF12849.7	gi|345005102|ref|YP_004807955.1|	-	1.3e-25	90.6	1.1	2.1e-25	90.0	1.1	1.3	1	0	0	1	1	1	1	PBP	superfamily	domain
PBP_like	PF12727.7	gi|345005102|ref|YP_004807955.1|	-	1.4e-24	86.3	0.0	1.9e-24	85.9	0.0	1.2	1	0	0	1	1	1	1	PBP	superfamily	domain
TAT_signal	PF10518.9	gi|345005102|ref|YP_004807955.1|	-	0.00012	21.7	4.7	0.00027	20.7	4.7	1.5	1	0	0	1	1	1	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
UCR_Fe-S_N	PF10399.9	gi|345005102|ref|YP_004807955.1|	-	3	7.3	7.9	0.15	11.4	2.3	1.8	2	0	0	2	2	2	0	Ubiquitinol-cytochrome	C	reductase	Fe-S	subunit	TAT	signal
PhoU	PF01895.19	gi|345005103|ref|YP_004807956.1|	-	1.5e-21	76.6	12.3	6.7e-19	68.1	1.8	2.4	2	0	0	2	2	2	2	PhoU	domain
MazE_antitoxin	PF04014.18	gi|345005103|ref|YP_004807956.1|	-	1.7e-08	34.2	0.2	6.1e-08	32.4	0.0	2.0	2	0	0	2	2	2	1	Antidote-toxin	recognition	MazE,	bacterial	antitoxin
SesA	PF17107.5	gi|345005103|ref|YP_004807956.1|	-	0.053	13.7	0.5	0.17	12.0	0.5	1.9	1	1	0	1	1	1	0	N-terminal	domain	on	NACHT_NTPase	and	P-loop	NTPases
PGPGW	PF09656.10	gi|345005104|ref|YP_004807957.1|	-	1.3	8.5	9.0	0.53	9.8	0.7	2.1	1	1	1	2	2	2	0	Putative	transmembrane	protein	(PGPGW)
Ribosomal_S8e	PF01201.22	gi|345005105|ref|YP_004807958.1|	-	4.6e-30	104.6	4.1	5.2e-30	104.4	4.1	1.0	1	0	0	1	1	1	1	Ribosomal	protein	S8e
DUF2240	PF09999.9	gi|345005106|ref|YP_004807959.1|	-	7.5e-48	161.8	0.4	8.9e-48	161.6	0.4	1.0	1	0	0	1	1	1	1	Uncharacterized	protein	conserved	in	archaea	(DUF2240)
MS_channel	PF00924.18	gi|345005108|ref|YP_004807961.1|	-	6.7e-32	110.7	0.1	9.1e-32	110.3	0.1	1.2	1	0	0	1	1	1	1	Mechanosensitive	ion	channel
Ferrochelatase	PF00762.19	gi|345005109|ref|YP_004807962.1|	-	4e-67	226.6	0.0	4.7e-67	226.3	0.0	1.0	1	0	0	1	1	1	1	Ferrochelatase
Glyco_trans_4_4	PF13579.6	gi|345005109|ref|YP_004807962.1|	-	0.0021	18.5	0.1	0.36	11.3	0.1	2.3	2	0	0	2	2	2	2	Glycosyl	transferase	4-like	domain
CbiX	PF01903.17	gi|345005109|ref|YP_004807962.1|	-	0.017	15.5	0.2	1.7	9.0	0.0	2.8	3	1	0	3	3	3	0	CbiX
Glyco_transf_4	PF13439.6	gi|345005109|ref|YP_004807962.1|	-	0.079	12.9	0.0	0.15	12.1	0.0	1.4	1	0	0	1	1	1	0	Glycosyltransferase	Family	4
MutL_C	PF08676.11	gi|345005109|ref|YP_004807962.1|	-	0.16	11.7	0.0	0.41	10.4	0.0	1.6	1	0	0	1	1	1	0	MutL	C	terminal	dimerisation	domain
Amino_oxidase	PF01593.24	gi|345005110|ref|YP_004807963.1|	-	1.3e-35	123.6	0.1	1.6e-35	123.3	0.1	1.0	1	0	0	1	1	1	1	Flavin	containing	amine	oxidoreductase
NAD_binding_8	PF13450.6	gi|345005110|ref|YP_004807963.1|	-	9e-10	38.7	0.2	1.8e-09	37.7	0.2	1.5	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
DAO	PF01266.24	gi|345005110|ref|YP_004807963.1|	-	4.3e-05	23.3	4.0	0.00024	20.8	4.0	2.0	1	1	0	1	1	1	1	FAD	dependent	oxidoreductase
Pyr_redox_2	PF07992.14	gi|345005110|ref|YP_004807963.1|	-	0.0006	19.1	0.6	0.018	14.3	0.1	2.2	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_binding_9	PF13454.6	gi|345005110|ref|YP_004807963.1|	-	0.0018	18.3	0.1	1.5	8.8	0.2	2.6	2	1	0	2	2	2	2	FAD-NAD(P)-binding
FAD_binding_3	PF01494.19	gi|345005110|ref|YP_004807963.1|	-	0.0018	17.6	0.1	0.0025	17.1	0.1	1.2	1	0	0	1	1	1	1	FAD	binding	domain
FMO-like	PF00743.19	gi|345005110|ref|YP_004807963.1|	-	0.0022	16.5	0.1	0.0032	16.0	0.1	1.2	1	0	0	1	1	1	1	Flavin-binding	monooxygenase-like
Prenylcys_lyase	PF07156.14	gi|345005110|ref|YP_004807963.1|	-	0.016	14.3	0.0	0.024	13.8	0.0	1.1	1	0	0	1	1	1	0	Prenylcysteine	lyase
FAD_binding_2	PF00890.24	gi|345005110|ref|YP_004807963.1|	-	0.035	13.2	0.7	0.058	12.5	0.7	1.4	1	0	0	1	1	1	0	FAD	binding	domain
3HCDH_N	PF02737.18	gi|345005110|ref|YP_004807963.1|	-	0.23	11.3	0.9	0.48	10.3	0.9	1.6	1	1	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
URO-D	PF01208.17	gi|345005111|ref|YP_004807964.1|	-	1.6e-106	356.4	0.0	1.8e-106	356.2	0.0	1.0	1	0	0	1	1	1	1	Uroporphyrinogen	decarboxylase	(URO-D)
Usp	PF00582.26	gi|345005112|ref|YP_004807965.1|	-	2.5e-37	128.5	3.2	2.8e-37	128.3	3.2	1.0	1	0	0	1	1	1	1	Universal	stress	protein	family
Dus	PF01207.17	gi|345005112|ref|YP_004807965.1|	-	0.064	12.3	0.0	0.089	11.9	0.0	1.2	1	0	0	1	1	1	0	Dihydrouridine	synthase	(Dus)
Acetyltransf_9	PF13527.7	gi|345005112|ref|YP_004807965.1|	-	0.11	12.5	0.1	0.18	11.9	0.1	1.3	1	0	0	1	1	1	0	Acetyltransferase	(GNAT)	domain
BPL_LplA_LipB	PF03099.19	gi|345005113|ref|YP_004807966.1|	-	2.6e-12	46.8	0.0	5.5e-12	45.7	0.0	1.5	1	1	0	1	1	1	1	Biotin/lipoate	A/B	protein	ligase	family
BPL_C	PF02237.17	gi|345005113|ref|YP_004807966.1|	-	3.4e-12	46.0	0.5	6.9e-12	45.1	0.5	1.6	1	0	0	1	1	1	1	Biotin	protein	ligase	C	terminal	domain
HTH_11	PF08279.12	gi|345005113|ref|YP_004807966.1|	-	7.4e-11	41.8	0.0	1.8e-10	40.6	0.0	1.7	2	0	0	2	2	2	1	HTH	domain
HTH_20	PF12840.7	gi|345005113|ref|YP_004807966.1|	-	5.1e-06	26.4	0.0	1.3e-05	25.2	0.0	1.7	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_24	PF13412.6	gi|345005113|ref|YP_004807966.1|	-	2.9e-05	23.5	0.0	6.1e-05	22.5	0.0	1.6	1	1	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
MarR_2	PF12802.7	gi|345005113|ref|YP_004807966.1|	-	0.0001	22.1	0.0	0.00024	20.9	0.0	1.7	1	0	0	1	1	1	1	MarR	family
HTH_5	PF01022.20	gi|345005113|ref|YP_004807966.1|	-	0.0015	18.3	0.0	0.0027	17.5	0.0	1.4	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_AsnC-type	PF13404.6	gi|345005113|ref|YP_004807966.1|	-	0.012	15.5	2.0	0.026	14.4	0.3	2.6	2	1	0	2	2	2	0	AsnC-type	helix-turn-helix	domain
DprA_WH	PF17782.1	gi|345005113|ref|YP_004807966.1|	-	0.014	15.5	0.2	0.077	13.1	0.1	2.2	2	0	0	2	2	2	0	DprA	winged	helix	domain
HTH_1	PF00126.27	gi|345005113|ref|YP_004807966.1|	-	0.014	15.3	1.2	0.033	14.1	0.0	2.2	2	0	0	2	2	2	0	Bacterial	regulatory	helix-turn-helix	protein,	lysR	family
TrmB	PF01978.19	gi|345005113|ref|YP_004807966.1|	-	0.016	15.1	0.0	0.029	14.2	0.0	1.3	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
Fe_dep_repress	PF01325.19	gi|345005113|ref|YP_004807966.1|	-	0.025	14.7	0.0	0.056	13.7	0.0	1.5	1	0	0	1	1	1	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_23	PF13384.6	gi|345005113|ref|YP_004807966.1|	-	0.11	12.4	0.0	0.28	11.1	0.0	1.8	1	0	0	1	1	1	0	Homeodomain-like	domain
YdaS_antitoxin	PF15943.5	gi|345005113|ref|YP_004807966.1|	-	0.12	12.3	0.0	0.26	11.2	0.0	1.5	1	0	0	1	1	1	0	Putative	antitoxin	of	bacterial	toxin-antitoxin	system,	YdaS/YdaT
HTH_10	PF04967.12	gi|345005113|ref|YP_004807966.1|	-	0.17	11.7	0.0	0.41	10.5	0.0	1.6	1	0	0	1	1	1	0	HTH	DNA	binding	domain
Carboxyl_trans	PF01039.22	gi|345005114|ref|YP_004807967.1|	-	2.5e-200	666.3	0.1	2.9e-200	666.1	0.1	1.0	1	0	0	1	1	1	1	Carboxyl	transferase	domain
MdcE	PF06833.11	gi|345005114|ref|YP_004807967.1|	-	0.009	15.5	0.1	0.056	12.9	0.0	2.0	2	0	0	2	2	2	1	Malonate	decarboxylase	gamma	subunit	(MdcE)
Rad51	PF08423.11	gi|345005116|ref|YP_004807969.1|	-	7.2e-05	22.2	0.0	9.4e-05	21.8	0.0	1.2	1	0	0	1	1	1	1	Rad51
Isochorismatase	PF00857.20	gi|345005116|ref|YP_004807969.1|	-	0.0088	16.2	0.0	0.018	15.2	0.0	1.6	1	0	0	1	1	1	1	Isochorismatase	family
GvpL_GvpF	PF06386.11	gi|345005117|ref|YP_004807970.1|	-	0.0077	16.2	2.0	0.0083	16.1	2.0	1.1	1	0	0	1	1	1	1	Gas	vesicle	synthesis	protein	GvpL/GvpF
DNA_pol_B	PF00136.21	gi|345005118|ref|YP_004807971.1|	-	1.8e-24	86.3	0.0	6.6e-24	84.4	0.0	1.7	1	1	0	1	1	1	1	DNA	polymerase	family	B
AAA_22	PF13401.6	gi|345005119|ref|YP_004807972.1|	-	1.2e-12	48.3	0.0	9.5e-12	45.4	0.0	2.1	2	0	0	2	2	2	1	AAA	domain
AAA_16	PF13191.6	gi|345005119|ref|YP_004807972.1|	-	1.7e-10	41.6	2.0	7.7e-10	39.4	0.2	2.6	1	1	1	2	2	2	1	AAA	ATPase	domain
Bac_DnaA	PF00308.18	gi|345005119|ref|YP_004807972.1|	-	3.7e-08	33.5	0.1	7.7e-05	22.6	0.1	2.5	2	1	1	3	3	3	2	Bacterial	dnaA	protein
AAA	PF00004.29	gi|345005119|ref|YP_004807972.1|	-	1.1e-07	32.3	0.0	4.2e-07	30.4	0.0	2.1	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_assoc_2	PF16193.5	gi|345005119|ref|YP_004807972.1|	-	1e-06	29.0	1.2	2.1e-06	27.9	0.5	1.9	2	0	0	2	2	1	1	AAA	C-terminal	domain
AAA_5	PF07728.14	gi|345005119|ref|YP_004807972.1|	-	1.4e-05	25.1	0.0	4.5e-05	23.5	0.0	1.8	2	0	0	2	2	2	1	AAA	domain	(dynein-related	subfamily)
AAA_33	PF13671.6	gi|345005119|ref|YP_004807972.1|	-	2.6e-05	24.4	0.5	0.00015	22.0	0.5	2.3	1	1	0	1	1	1	1	AAA	domain
AAA_18	PF13238.6	gi|345005119|ref|YP_004807972.1|	-	0.00061	20.3	0.0	0.0025	18.3	0.0	1.9	2	0	0	2	2	2	1	AAA	domain
DUF815	PF05673.13	gi|345005119|ref|YP_004807972.1|	-	0.0007	18.8	0.0	0.0014	17.8	0.0	1.4	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF815)
NACHT	PF05729.12	gi|345005119|ref|YP_004807972.1|	-	0.0011	18.9	0.0	0.002	18.1	0.0	1.4	1	0	0	1	1	1	1	NACHT	domain
NB-ARC	PF00931.22	gi|345005119|ref|YP_004807972.1|	-	0.0014	17.9	0.0	0.0022	17.2	0.0	1.4	1	0	0	1	1	1	1	NB-ARC	domain
AAA_24	PF13479.6	gi|345005119|ref|YP_004807972.1|	-	0.0043	16.8	0.0	0.011	15.5	0.0	1.6	1	1	0	1	1	1	1	AAA	domain
TsaE	PF02367.17	gi|345005119|ref|YP_004807972.1|	-	0.0046	17.0	0.0	0.0091	16.0	0.0	1.4	1	0	0	1	1	1	1	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
AAA_30	PF13604.6	gi|345005119|ref|YP_004807972.1|	-	0.009	15.7	0.2	0.037	13.7	0.0	2.0	2	1	0	2	2	2	1	AAA	domain
AAA_19	PF13245.6	gi|345005119|ref|YP_004807972.1|	-	0.01	16.2	0.8	0.2	12.0	0.0	2.4	2	1	0	2	2	2	0	AAA	domain
IstB_IS21	PF01695.17	gi|345005119|ref|YP_004807972.1|	-	0.012	15.4	0.2	0.041	13.6	0.0	2.1	3	0	0	3	3	2	0	IstB-like	ATP	binding	protein
ABC_tran	PF00005.27	gi|345005119|ref|YP_004807972.1|	-	0.015	15.8	0.1	0.086	13.4	0.0	2.3	3	1	0	3	3	2	0	ABC	transporter
ATPase_2	PF01637.18	gi|345005119|ref|YP_004807972.1|	-	0.023	14.6	0.1	0.14	12.1	0.0	2.2	2	1	0	2	2	2	0	ATPase	domain	predominantly	from	Archaea
Sigma54_activat	PF00158.26	gi|345005119|ref|YP_004807972.1|	-	0.023	14.4	0.0	0.048	13.4	0.0	1.6	1	0	0	1	1	1	0	Sigma-54	interaction	domain
Zeta_toxin	PF06414.12	gi|345005119|ref|YP_004807972.1|	-	0.023	14.0	0.8	0.25	10.6	0.0	2.7	2	1	1	3	3	3	0	Zeta	toxin
Cytidylate_kin	PF02224.18	gi|345005119|ref|YP_004807972.1|	-	0.034	13.9	0.0	0.085	12.6	0.0	1.7	1	0	0	1	1	1	0	Cytidylate	kinase
RNA_helicase	PF00910.22	gi|345005119|ref|YP_004807972.1|	-	0.04	14.3	0.0	0.22	11.9	0.0	2.2	3	0	0	3	3	3	0	RNA	helicase
NTPase_1	PF03266.15	gi|345005119|ref|YP_004807972.1|	-	0.042	13.8	0.0	0.4	10.6	0.0	2.5	3	0	0	3	3	3	0	NTPase
DEAD	PF00270.29	gi|345005119|ref|YP_004807972.1|	-	0.042	13.6	0.1	7.9	6.2	0.0	2.3	1	1	0	2	2	2	0	DEAD/DEAH	box	helicase
PRK	PF00485.18	gi|345005119|ref|YP_004807972.1|	-	0.065	13.0	0.0	0.13	11.9	0.0	1.5	1	0	0	1	1	1	0	Phosphoribulokinase	/	Uridine	kinase	family
AAA_14	PF13173.6	gi|345005119|ref|YP_004807972.1|	-	0.078	13.0	0.0	0.15	12.0	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
SKI	PF01202.22	gi|345005119|ref|YP_004807972.1|	-	0.1	12.7	0.0	0.21	11.7	0.0	1.5	1	0	0	1	1	1	0	Shikimate	kinase
DUF2075	PF09848.9	gi|345005119|ref|YP_004807972.1|	-	0.14	11.4	0.0	2.7	7.2	0.0	2.1	2	0	0	2	2	2	0	Uncharacterized	conserved	protein	(DUF2075)
RsgA_GTPase	PF03193.16	gi|345005119|ref|YP_004807972.1|	-	0.16	11.9	0.0	0.39	10.6	0.0	1.6	1	0	0	1	1	1	0	RsgA	GTPase
DUF543	PF04418.12	gi|345005120|ref|YP_004807973.1|	-	0.071	13.1	0.2	0.083	12.9	0.2	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF543)
MOSC	PF03473.17	gi|345005121|ref|YP_004807974.1|	-	1.3e-05	25.2	0.1	2e-05	24.6	0.1	1.3	1	0	0	1	1	1	1	MOSC	domain
HD	PF01966.22	gi|345005122|ref|YP_004807975.1|	-	6.9e-14	52.1	0.8	6.9e-14	52.1	0.8	2.2	2	1	0	2	2	2	1	HD	domain
HD_2	PF12917.7	gi|345005122|ref|YP_004807975.1|	-	0.15	11.8	0.0	0.29	10.9	0.0	1.3	1	0	0	1	1	1	0	HD	containing	hydrolase-like	enzyme
PIN	PF01850.21	gi|345005123|ref|YP_004807976.1|	-	1.2e-09	38.7	0.8	1.4e-09	38.5	0.8	1.0	1	0	0	1	1	1	1	PIN	domain
VAPB_antitox	PF02697.14	gi|345005124|ref|YP_004807977.1|	-	4.7e-11	43.3	0.2	5.4e-11	43.1	0.2	1.0	1	0	0	1	1	1	1	Putative	antitoxin
PALP	PF00291.25	gi|345005125|ref|YP_004807978.1|	-	2.4e-63	214.3	8.0	2.8e-63	214.1	8.0	1.0	1	0	0	1	1	1	1	Pyridoxal-phosphate	dependent	enzyme
Zn-ribbon_8	PF09723.10	gi|345005125|ref|YP_004807978.1|	-	0.04	14.0	1.3	0.11	12.6	1.3	1.7	1	0	0	1	1	1	0	Zinc	ribbon	domain
DZR	PF12773.7	gi|345005125|ref|YP_004807978.1|	-	0.06	13.4	0.3	0.11	12.6	0.3	1.3	1	0	0	1	1	1	0	Double	zinc	ribbon
HypA	PF01155.19	gi|345005125|ref|YP_004807978.1|	-	0.089	12.8	0.2	0.18	11.8	0.2	1.5	1	0	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
TF_Zn_Ribbon	PF08271.12	gi|345005125|ref|YP_004807978.1|	-	0.14	11.7	1.8	0.3	10.7	1.8	1.5	1	0	0	1	1	1	0	TFIIB	zinc-binding
zf-LYAR	PF08790.11	gi|345005125|ref|YP_004807978.1|	-	0.15	12.0	1.8	0.14	12.1	0.6	1.7	1	1	0	1	1	1	0	LYAR-type	C2HC	zinc	finger
N6_Mtase	PF02384.16	gi|345005126|ref|YP_004807979.1|	-	0.0046	16.3	0.0	0.0079	15.5	0.0	1.4	1	1	0	1	1	1	1	N-6	DNA	Methylase
AAA_3	PF07726.11	gi|345005127|ref|YP_004807980.1|	-	7.6e-61	203.7	0.2	1.2e-60	203.1	0.2	1.3	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_lid_2	PF17863.1	gi|345005127|ref|YP_004807980.1|	-	1.7e-19	69.4	0.1	3.6e-19	68.4	0.1	1.6	1	0	0	1	1	1	1	AAA	lid	domain
AAA_5	PF07728.14	gi|345005127|ref|YP_004807980.1|	-	2e-13	50.5	0.0	3.1e-13	49.9	0.0	1.3	1	0	0	1	1	1	1	AAA	domain	(dynein-related	subfamily)
AAA	PF00004.29	gi|345005127|ref|YP_004807980.1|	-	5.5e-08	33.3	0.0	1.3e-07	32.1	0.0	1.7	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
Mg_chelatase	PF01078.21	gi|345005127|ref|YP_004807980.1|	-	9.9e-07	28.3	0.2	0.0026	17.2	0.1	2.5	3	0	0	3	3	3	2	Magnesium	chelatase,	subunit	ChlI
Sigma54_activat	PF00158.26	gi|345005127|ref|YP_004807980.1|	-	2e-06	27.6	0.0	0.0026	17.5	0.0	2.2	2	0	0	2	2	2	2	Sigma-54	interaction	domain
MCM	PF00493.23	gi|345005127|ref|YP_004807980.1|	-	3.3e-06	26.4	0.0	4.8e-06	25.8	0.0	1.2	1	0	0	1	1	1	1	MCM	P-loop	domain
RuvB_N	PF05496.12	gi|345005127|ref|YP_004807980.1|	-	4.6e-05	23.2	0.0	0.00064	19.5	0.0	2.2	1	1	0	1	1	1	1	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
DUF58	PF01882.18	gi|345005128|ref|YP_004807981.1|	-	1.7e-19	69.9	0.2	5.7e-19	68.2	0.2	2.0	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF58
Transglut_core	PF01841.19	gi|345005129|ref|YP_004807982.1|	-	2.6e-30	105.1	0.2	5.8e-30	104.0	0.2	1.6	1	0	0	1	1	1	1	Transglutaminase-like	superfamily
DUF4129	PF13559.6	gi|345005129|ref|YP_004807982.1|	-	8.6e-07	29.1	9.7	4.2e-06	26.9	9.7	2.3	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4129)
Transglut_core3	PF13471.6	gi|345005129|ref|YP_004807982.1|	-	4.5e-06	26.6	0.1	2.6e-05	24.1	0.0	2.4	2	0	0	2	2	2	1	Transglutaminase-like	superfamily
SHR3_chaperone	PF08229.11	gi|345005129|ref|YP_004807982.1|	-	0.16	11.0	0.4	0.25	10.3	0.4	1.3	1	0	0	1	1	1	0	ER	membrane	protein	SH3
DUF4218	PF13960.6	gi|345005129|ref|YP_004807982.1|	-	0.17	11.5	0.0	0.33	10.6	0.0	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4218)
SUI1	PF01253.22	gi|345005130|ref|YP_004807983.1|	-	2.9e-23	82.2	0.0	3.6e-23	81.9	0.0	1.1	1	0	0	1	1	1	1	Translation	initiation	factor	SUI1
Img2	PF05046.14	gi|345005130|ref|YP_004807983.1|	-	0.0016	18.7	0.0	0.0025	18.1	0.0	1.5	1	1	0	1	1	1	1	Mitochondrial	large	subunit	ribosomal	protein	(Img2)
DTW	PF03942.15	gi|345005130|ref|YP_004807983.1|	-	0.0079	15.9	0.4	0.0097	15.6	0.4	1.1	1	0	0	1	1	1	1	DTW	domain
CARDB	PF07705.11	gi|345005131|ref|YP_004807984.1|	-	2.5e-10	40.5	1.9	0.00014	22.1	0.5	3.3	3	0	0	3	3	3	2	CARDB
DUF4232	PF14016.6	gi|345005131|ref|YP_004807984.1|	-	0.0022	18.1	15.9	0.64	10.2	0.2	4.7	1	1	2	3	3	3	2	Protein	of	unknown	function	(DUF4232)
DUF824	PF05688.11	gi|345005131|ref|YP_004807984.1|	-	0.036	13.9	2.0	8.8	6.2	0.5	3.4	3	0	0	3	3	3	0	Salmonella	repeat	of	unknown	function	(DUF824)
ASH	PF15780.5	gi|345005131|ref|YP_004807984.1|	-	0.13	12.5	0.9	0.49	10.6	0.4	2.2	1	1	0	2	2	2	0	Abnormal	spindle-like	microcephaly-assoc'd,	ASPM-SPD-2-Hydin
DUF11	PF01345.18	gi|345005131|ref|YP_004807984.1|	-	2.2	8.6	20.3	2.1	8.7	1.1	4.6	2	1	1	3	3	3	0	Domain	of	unknown	function	DUF11
Rhodanese	PF00581.20	gi|345005132|ref|YP_004807985.1|	-	2.8e-16	59.9	0.0	3.3e-16	59.7	0.0	1.1	1	0	0	1	1	1	1	Rhodanese-like	domain
NUDIX	PF00293.28	gi|345005133|ref|YP_004807986.1|	-	5.8e-14	52.2	2.0	8.8e-14	51.7	2.0	1.2	1	0	0	1	1	1	1	NUDIX	domain
zf-C2H2_9	PF16293.5	gi|345005135|ref|YP_004807988.1|	-	5.4e-05	23.0	0.2	9.6e-05	22.1	0.2	1.4	1	0	0	1	1	1	1	C2H2	type	zinc-finger	(1	copy)
Acetyltransf_1	PF00583.25	gi|345005136|ref|YP_004807989.1|	-	5.8e-16	58.8	0.0	7.2e-16	58.5	0.0	1.1	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_10	PF13673.7	gi|345005136|ref|YP_004807989.1|	-	4.3e-14	52.6	0.0	4.7e-14	52.4	0.0	1.1	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_7	PF13508.7	gi|345005136|ref|YP_004807989.1|	-	7.7e-12	45.5	0.0	1.1e-11	44.9	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
FR47	PF08445.10	gi|345005136|ref|YP_004807989.1|	-	6.7e-08	32.4	0.0	1e-07	31.8	0.0	1.2	1	0	0	1	1	1	1	FR47-like	protein
Acetyltransf_9	PF13527.7	gi|345005136|ref|YP_004807989.1|	-	8.8e-05	22.6	0.0	0.00014	21.9	0.0	1.4	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_4	PF13420.7	gi|345005136|ref|YP_004807989.1|	-	0.027	14.6	0.0	0.034	14.3	0.0	1.1	1	0	0	1	1	1	0	Acetyltransferase	(GNAT)	domain
Acetyltransf_CG	PF14542.6	gi|345005136|ref|YP_004807989.1|	-	0.075	13.2	0.0	0.11	12.6	0.0	1.3	1	0	0	1	1	1	0	GCN5-related	N-acetyl-transferase
Acetyltransf_3	PF13302.7	gi|345005136|ref|YP_004807989.1|	-	0.092	13.4	0.0	0.11	13.2	0.0	1.1	1	0	0	1	1	1	0	Acetyltransferase	(GNAT)	domain
Acetyltransf_8	PF13523.6	gi|345005136|ref|YP_004807989.1|	-	0.11	12.2	0.0	0.14	11.9	0.0	1.3	1	0	0	1	1	1	0	Acetyltransferase	(GNAT)	domain
Aconitase	PF00330.20	gi|345005137|ref|YP_004807990.1|	-	1.9e-103	347.0	0.4	1e-101	341.3	0.4	2.2	1	1	0	1	1	1	1	Aconitase	family	(aconitate	hydratase)
Aconitase_C	PF00694.19	gi|345005137|ref|YP_004807990.1|	-	1.8e-19	70.4	0.0	3.7e-19	69.4	0.0	1.5	1	0	0	1	1	1	1	Aconitase	C-terminal	domain
DUF521	PF04412.13	gi|345005137|ref|YP_004807990.1|	-	0.00037	19.3	0.0	0.00055	18.8	0.0	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF521)
dUTPase	PF00692.19	gi|345005138|ref|YP_004807991.1|	-	1.1e-07	31.5	0.0	1.6e-07	31.1	0.0	1.2	1	0	0	1	1	1	1	dUTPase
HATPase_c	PF02518.26	gi|345005139|ref|YP_004807992.1|	-	1e-13	51.8	0.0	2e-13	50.8	0.0	1.5	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
PAS_9	PF13426.7	gi|345005139|ref|YP_004807992.1|	-	1.7e-06	28.2	0.0	4.3e-06	26.9	0.0	1.6	2	0	0	2	2	2	1	PAS	domain
PAS_4	PF08448.10	gi|345005139|ref|YP_004807992.1|	-	3.8e-06	27.1	1.0	9.7e-06	25.8	0.2	2.0	2	0	0	2	2	2	1	PAS	fold
HATPase_c_2	PF13581.6	gi|345005139|ref|YP_004807992.1|	-	1.4e-05	25.1	0.5	3e-05	24.0	0.1	1.8	2	0	0	2	2	2	1	Histidine	kinase-like	ATPase	domain
HATPase_c_5	PF14501.6	gi|345005139|ref|YP_004807992.1|	-	0.0041	17.0	0.0	0.01	15.7	0.0	1.6	1	0	0	1	1	1	1	GHKL	domain
PAS	PF00989.25	gi|345005139|ref|YP_004807992.1|	-	0.0057	16.6	0.0	0.011	15.7	0.0	1.5	1	0	0	1	1	1	1	PAS	fold
HATPase_c_3	PF13589.6	gi|345005139|ref|YP_004807992.1|	-	0.0059	16.4	0.0	0.011	15.6	0.0	1.4	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HalOD1	PF18545.1	gi|345005140|ref|YP_004807993.1|	-	6.4e-25	87.2	2.4	8.3e-25	86.9	2.4	1.2	1	0	0	1	1	1	1	Halobacterial	output	domain	1
MAPEG	PF01124.18	gi|345005140|ref|YP_004807993.1|	-	0.055	13.4	0.0	0.08	12.8	0.0	1.2	1	0	0	1	1	1	0	MAPEG	family
RepB	PF07506.11	gi|345005141|ref|YP_004807994.1|	-	0.022	14.8	0.0	0.025	14.7	0.0	1.3	1	0	0	1	1	1	0	RepB	plasmid	partitioning	protein
Peptidase_M20	PF01546.28	gi|345005142|ref|YP_004807995.1|	-	7.3e-27	94.4	1.8	9.7e-27	94.0	1.8	1.2	1	0	0	1	1	1	1	Peptidase	family	M20/M25/M40
M20_dimer	PF07687.14	gi|345005142|ref|YP_004807995.1|	-	2.7e-06	27.2	0.0	1.1e-05	25.3	0.0	2.0	2	0	0	2	2	2	1	Peptidase	dimerisation	domain
Peptidase_M28	PF04389.17	gi|345005142|ref|YP_004807995.1|	-	2.1e-05	24.3	0.8	0.0052	16.5	0.2	2.2	2	0	0	2	2	2	2	Peptidase	family	M28
IcmF_C	PF06744.12	gi|345005142|ref|YP_004807995.1|	-	0.083	12.5	0.0	0.15	11.7	0.0	1.3	1	0	0	1	1	1	0	Type	VI	secretion	protein	IcmF	C-terminal
CRISPR_assoc	PF08798.11	gi|345005142|ref|YP_004807995.1|	-	0.12	12.4	0.0	0.21	11.7	0.0	1.3	1	0	0	1	1	1	0	CRISPR	associated	protein
Peptidase_M42	PF05343.14	gi|345005142|ref|YP_004807995.1|	-	0.14	11.2	0.0	2.9	6.8	0.0	2.1	2	0	0	2	2	2	0	M42	glutamyl	aminopeptidase
HTH_ParB	PF17762.1	gi|345005143|ref|YP_004807996.1|	-	0.017	14.9	0.0	0.027	14.3	0.0	1.3	1	0	0	1	1	1	0	HTH	domain	found	in	ParB	protein
Rhodanese	PF00581.20	gi|345005144|ref|YP_004807997.1|	-	1.1e-14	54.9	0.0	1.3e-14	54.6	0.0	1.1	1	0	0	1	1	1	1	Rhodanese-like	domain
Prok-JAB	PF14464.6	gi|345005145|ref|YP_004807998.1|	-	3.3e-19	68.8	0.0	3.8e-19	68.6	0.0	1.1	1	0	0	1	1	1	1	Prokaryotic	homologs	of	the	JAB	domain
JAB	PF01398.21	gi|345005145|ref|YP_004807998.1|	-	2.1e-09	37.4	0.0	2.9e-09	36.9	0.0	1.1	1	0	0	1	1	1	1	JAB1/Mov34/MPN/PAD-1	ubiquitin	protease
UPF0172	PF03665.13	gi|345005145|ref|YP_004807998.1|	-	0.038	14.0	0.0	0.06	13.4	0.0	1.3	1	0	0	1	1	1	0	Uncharacterised	protein	family	(UPF0172)
Beta-Casp	PF10996.8	gi|345005147|ref|YP_004808000.1|	-	1.9e-13	50.7	0.0	3.7e-13	49.7	0.0	1.5	1	0	0	1	1	1	1	Beta-Casp	domain
RMMBL	PF07521.12	gi|345005147|ref|YP_004808000.1|	-	6.9e-11	41.9	0.2	5.8e-10	39.0	0.0	2.3	2	0	0	2	2	2	1	Zn-dependent	metallo-hydrolase	RNA	specificity	domain
Lactamase_B_2	PF12706.7	gi|345005147|ref|YP_004808000.1|	-	2.8e-06	27.0	0.4	9.1e-06	25.3	0.2	1.9	1	1	0	1	1	1	1	Beta-lactamase	superfamily	domain
Lactamase_B	PF00753.27	gi|345005147|ref|YP_004808000.1|	-	0.00058	19.9	5.5	0.00058	19.9	5.5	2.6	2	1	0	2	2	2	1	Metallo-beta-lactamase	superfamily
QRPTase_C	PF01729.19	gi|345005149|ref|YP_004808002.1|	-	3.8e-19	69.1	0.0	5.3e-19	68.6	0.0	1.2	1	0	0	1	1	1	1	Quinolinate	phosphoribosyl	transferase,	C-terminal	domain
QRPTase_N	PF02749.16	gi|345005149|ref|YP_004808002.1|	-	0.014	15.4	0.0	0.057	13.5	0.0	2.0	2	0	0	2	2	2	0	Quinolinate	phosphoribosyl	transferase,	N-terminal	domain
Peptidase_M78	PF06114.13	gi|345005150|ref|YP_004808003.1|	-	0.0047	16.9	0.0	0.011	15.7	0.0	1.6	1	0	0	1	1	1	1	IrrE	N-terminal-like	domain
DUF4157	PF13699.6	gi|345005150|ref|YP_004808003.1|	-	0.15	12.3	0.0	0.42	10.9	0.0	1.8	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4157)
PGF-CTERM	PF18204.1	gi|345005151|ref|YP_004808004.1|	-	4.6e-05	23.2	2.9	9.6e-05	22.2	2.9	1.6	1	0	0	1	1	1	1	PGF-CTERM	motif
Peptidase_M78	PF06114.13	gi|345005151|ref|YP_004808004.1|	-	0.017	15.1	0.0	0.031	14.2	0.0	1.4	1	0	0	1	1	1	0	IrrE	N-terminal-like	domain
DUF4241	PF14025.6	gi|345005151|ref|YP_004808004.1|	-	0.032	14.5	0.2	0.086	13.1	0.0	1.7	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF4241)
Trp_oprn_chp	PF09534.10	gi|345005151|ref|YP_004808004.1|	-	0.046	13.5	2.9	0.32	10.8	0.1	2.2	2	0	0	2	2	2	0	Tryptophan-associated	transmembrane	protein	(Trp_oprn_chp)
Peptidase_M91	PF14891.6	gi|345005151|ref|YP_004808004.1|	-	0.07	13.4	0.0	0.16	12.3	0.0	1.6	1	0	0	1	1	1	0	Effector	protein
Peptidase_M76	PF09768.9	gi|345005151|ref|YP_004808004.1|	-	0.075	12.8	0.0	0.12	12.1	0.0	1.2	1	0	0	1	1	1	0	Peptidase	M76	family
Isochorismatase	PF00857.20	gi|345005152|ref|YP_004808005.1|	-	1e-46	159.3	0.1	1.1e-46	159.2	0.1	1.0	1	0	0	1	1	1	1	Isochorismatase	family
4HBT	PF03061.22	gi|345005153|ref|YP_004808006.1|	-	6.1e-13	48.9	1.5	9.5e-13	48.3	1.5	1.2	1	0	0	1	1	1	1	Thioesterase	superfamily
DUF4442	PF14539.6	gi|345005153|ref|YP_004808006.1|	-	5.7e-08	33.0	0.0	7.4e-08	32.6	0.0	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4442)
Docking	PF08990.11	gi|345005153|ref|YP_004808006.1|	-	0.0031	17.1	0.2	0.0067	16.0	0.2	1.6	1	0	0	1	1	1	1	Erythronolide	synthase	docking
Peptidase_M23	PF01551.22	gi|345005154|ref|YP_004808007.1|	-	0.068	13.4	0.0	0.17	12.1	0.0	1.6	1	0	0	1	1	1	0	Peptidase	family	M23
BPL_LplA_LipB	PF03099.19	gi|345005155|ref|YP_004808008.1|	-	0.074	13.0	0.0	0.11	12.4	0.0	1.2	1	0	0	1	1	1	0	Biotin/lipoate	A/B	protein	ligase	family
RnfC_N	PF13375.6	gi|345005155|ref|YP_004808008.1|	-	0.086	12.8	0.1	0.16	11.9	0.1	1.4	1	0	0	1	1	1	0	RnfC	Barrel	sandwich	hybrid	domain
Amidohydro_1	PF01979.20	gi|345005156|ref|YP_004808009.1|	-	7.7e-25	87.9	0.1	4e-24	85.6	0.1	2.0	1	1	0	1	1	1	1	Amidohydrolase	family
Amidohydro_3	PF07969.11	gi|345005156|ref|YP_004808009.1|	-	4.8e-17	62.6	9.8	2.6e-08	33.8	3.4	3.5	1	1	1	2	2	2	2	Amidohydrolase	family
TatD_DNase	PF01026.21	gi|345005156|ref|YP_004808009.1|	-	0.018	14.5	0.5	0.18	11.2	0.5	2.2	1	1	0	1	1	1	0	TatD	related	DNase
FAD_binding_2	PF00890.24	gi|345005158|ref|YP_004808011.1|	-	8.8e-118	394.0	7.9	8.8e-118	394.0	7.9	1.7	2	0	0	2	2	2	1	FAD	binding	domain
Succ_DH_flav_C	PF02910.20	gi|345005158|ref|YP_004808011.1|	-	4.7e-36	123.6	0.4	8.4e-36	122.8	0.4	1.4	1	0	0	1	1	1	1	Fumarate	reductase	flavoprotein	C-term
Pyr_redox_2	PF07992.14	gi|345005158|ref|YP_004808011.1|	-	6.3e-09	35.5	4.7	6.9e-05	22.2	2.4	2.7	2	1	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
HI0933_like	PF03486.14	gi|345005158|ref|YP_004808011.1|	-	1.7e-05	23.7	1.3	0.00022	20.0	0.2	2.7	3	0	0	3	3	3	1	HI0933-like	protein
DAO	PF01266.24	gi|345005158|ref|YP_004808011.1|	-	2.1e-05	24.3	6.1	0.00025	20.8	5.4	2.4	1	1	0	1	1	1	1	FAD	dependent	oxidoreductase
GIDA	PF01134.22	gi|345005158|ref|YP_004808011.1|	-	0.00029	20.0	1.7	0.00029	20.0	1.7	1.9	2	0	0	2	2	2	1	Glucose	inhibited	division	protein	A
FAD_binding_3	PF01494.19	gi|345005158|ref|YP_004808011.1|	-	0.0014	17.9	0.7	0.0014	17.9	0.7	1.6	2	0	0	2	2	2	1	FAD	binding	domain
FAD_oxidored	PF12831.7	gi|345005158|ref|YP_004808011.1|	-	0.0018	17.7	4.1	0.0034	16.8	3.6	1.7	2	0	0	2	2	2	1	FAD	dependent	oxidoreductase
Thi4	PF01946.17	gi|345005158|ref|YP_004808011.1|	-	0.0084	15.4	2.2	0.053	12.7	0.4	2.6	3	0	0	3	3	3	1	Thi4	family
Pyr_redox_3	PF13738.6	gi|345005158|ref|YP_004808011.1|	-	0.016	14.5	2.5	0.024	13.9	0.4	2.3	3	0	0	3	3	3	0	Pyridine	nucleotide-disulphide	oxidoreductase
TPR_9	PF13371.6	gi|345005158|ref|YP_004808011.1|	-	0.034	14.3	0.0	0.49	10.6	0.0	2.7	3	0	0	3	3	3	0	Tetratricopeptide	repeat
AlaDh_PNT_C	PF01262.21	gi|345005158|ref|YP_004808011.1|	-	0.13	11.6	1.9	0.095	12.0	0.3	1.6	2	0	0	2	2	2	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
Lycopene_cycl	PF05834.12	gi|345005158|ref|YP_004808011.1|	-	0.15	11.1	0.3	0.23	10.5	0.3	1.2	1	0	0	1	1	1	0	Lycopene	cyclase	protein
Fer2_3	PF13085.6	gi|345005159|ref|YP_004808012.1|	-	1.1e-32	112.3	0.8	2.3e-32	111.3	0.0	1.9	2	0	0	2	2	2	1	2Fe-2S	iron-sulfur	cluster	binding	domain
Fer4_8	PF13183.6	gi|345005159|ref|YP_004808012.1|	-	1.5e-12	47.8	4.3	3.8e-12	46.5	4.3	1.7	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_10	PF13237.6	gi|345005159|ref|YP_004808012.1|	-	2e-07	31.0	4.3	4.3e-07	29.9	4.3	1.6	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_7	PF12838.7	gi|345005159|ref|YP_004808012.1|	-	2.5e-05	24.7	6.4	2.6e-05	24.7	4.1	2.3	2	0	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_17	PF13534.6	gi|345005159|ref|YP_004808012.1|	-	4.5e-05	23.9	4.7	0.00012	22.5	4.7	1.8	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_9	PF13187.6	gi|345005159|ref|YP_004808012.1|	-	0.00025	21.1	6.7	0.0017	18.4	6.9	2.2	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_18	PF13746.6	gi|345005159|ref|YP_004808012.1|	-	0.0029	17.8	1.2	2.6	8.3	0.1	2.4	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_20	PF14691.6	gi|345005159|ref|YP_004808012.1|	-	0.029	14.1	6.6	0.56	10.0	0.4	2.5	1	1	1	2	2	2	0	Dihydroprymidine	dehydrogenase	domain	II,	4Fe-4S	cluster
Fer4_16	PF13484.6	gi|345005159|ref|YP_004808012.1|	-	0.089	13.7	9.4	0.68	10.9	2.2	2.8	1	1	1	2	2	2	0	4Fe-4S	double	cluster	binding	domain
YtkA	PF13115.6	gi|345005159|ref|YP_004808012.1|	-	0.14	12.8	1.0	0.59	10.8	0.0	2.4	3	0	0	3	3	3	0	YtkA-like
Fer4_4	PF12800.7	gi|345005159|ref|YP_004808012.1|	-	0.22	12.1	8.0	0.94	10.1	2.4	2.6	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_6	PF12837.7	gi|345005159|ref|YP_004808012.1|	-	2.2	8.5	7.4	8.1	6.7	2.2	2.6	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_15	PF13459.6	gi|345005159|ref|YP_004808012.1|	-	4.6	8.1	7.2	14	6.5	0.2	3.2	3	0	0	3	3	3	0	4Fe-4S	single	cluster	domain
Fer4	PF00037.27	gi|345005159|ref|YP_004808012.1|	-	4.6	7.2	9.3	6.2	6.8	3.1	2.5	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_3	PF12798.7	gi|345005159|ref|YP_004808012.1|	-	8.2	7.6	11.5	6	8.0	0.3	2.6	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Sdh_cyt	PF01127.22	gi|345005160|ref|YP_004808013.1|	-	2.3e-08	34.1	11.6	3.1e-08	33.7	11.6	1.2	1	0	0	1	1	1	1	Succinate	dehydrogenase/Fumarate	reductase	transmembrane	subunit
DctQ	PF04290.12	gi|345005160|ref|YP_004808013.1|	-	0.2	11.6	11.9	1.4	8.9	0.4	2.0	1	1	1	2	2	2	0	Tripartite	ATP-independent	periplasmic	transporters,	DctQ	component
UPF0182	PF03699.13	gi|345005160|ref|YP_004808013.1|	-	0.36	8.9	7.5	0.38	8.8	7.5	1.0	1	0	0	1	1	1	0	Uncharacterised	protein	family	(UPF0182)
Sdh_cyt	PF01127.22	gi|345005161|ref|YP_004808014.1|	-	1.8e-25	89.3	3.7	2e-25	89.2	3.7	1.0	1	0	0	1	1	1	1	Succinate	dehydrogenase/Fumarate	reductase	transmembrane	subunit
Tox-ODYAM1	PF15642.6	gi|345005161|ref|YP_004808014.1|	-	0.014	14.3	0.1	0.018	14.0	0.1	1.1	1	0	0	1	1	1	0	Toxin	in	Odyssella	and	Amoebophilus
AstE_AspA	PF04952.14	gi|345005162|ref|YP_004808015.1|	-	1.9e-65	220.8	0.0	2.3e-65	220.6	0.0	1.0	1	0	0	1	1	1	1	Succinylglutamate	desuccinylase	/	Aspartoacylase	family
Claudin_2	PF13903.6	gi|345005163|ref|YP_004808016.1|	-	0.00044	20.1	0.9	0.00058	19.7	0.9	1.2	1	0	0	1	1	1	1	PMP-22/EMP/MP20/Claudin	tight	junction
AbrB	PF05145.12	gi|345005163|ref|YP_004808016.1|	-	0.015	14.2	2.6	0.016	14.1	2.6	1.1	1	0	0	1	1	1	0	Transition	state	regulatory	protein	AbrB
DUF347	PF03988.12	gi|345005163|ref|YP_004808016.1|	-	0.027	14.7	10.6	0.54	10.5	3.9	2.2	1	1	1	2	2	2	0	Repeat	of	Unknown	Function	(DUF347)
DUF1772	PF08592.11	gi|345005163|ref|YP_004808016.1|	-	0.094	13.0	2.4	0.11	12.8	2.4	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1772)
DHHC	PF01529.20	gi|345005163|ref|YP_004808016.1|	-	0.098	12.8	1.8	0.12	12.5	1.8	1.1	1	0	0	1	1	1	0	DHHC	palmitoyltransferase
UcrQ	PF02939.16	gi|345005163|ref|YP_004808016.1|	-	0.13	12.2	0.1	1	9.3	0.1	2.0	2	0	0	2	2	2	0	UcrQ	family
DUF2530	PF10745.9	gi|345005163|ref|YP_004808016.1|	-	0.45	10.8	3.7	0.95	9.8	3.7	1.6	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF2530)
HTH_20	PF12840.7	gi|345005164|ref|YP_004808017.1|	-	3.9e-05	23.6	0.2	3.9e-05	23.6	0.2	2.4	3	1	0	3	3	3	1	Helix-turn-helix	domain
MarR_2	PF12802.7	gi|345005164|ref|YP_004808017.1|	-	0.0015	18.4	0.2	0.0039	17.1	0.2	1.8	1	0	0	1	1	1	1	MarR	family
HTH_IclR	PF09339.10	gi|345005164|ref|YP_004808017.1|	-	0.0071	16.1	0.2	0.085	12.7	0.0	2.4	2	0	0	2	2	2	1	IclR	helix-turn-helix	domain
HTH_5	PF01022.20	gi|345005164|ref|YP_004808017.1|	-	0.03	14.2	0.0	0.045	13.6	0.0	1.3	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
HTH_29	PF13551.6	gi|345005164|ref|YP_004808017.1|	-	0.032	14.3	0.1	0.088	12.8	0.1	1.8	1	0	0	1	1	1	0	Winged	helix-turn	helix
HTH_Crp_2	PF13545.6	gi|345005164|ref|YP_004808017.1|	-	0.035	14.1	0.0	0.076	13.0	0.0	1.6	1	0	0	1	1	1	0	Crp-like	helix-turn-helix	domain
HTH_27	PF13463.6	gi|345005164|ref|YP_004808017.1|	-	0.051	14.1	0.0	0.093	13.2	0.0	1.4	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
TrmB	PF01978.19	gi|345005164|ref|YP_004808017.1|	-	0.058	13.3	0.0	0.11	12.5	0.0	1.4	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
DUF1724	PF08350.10	gi|345005164|ref|YP_004808017.1|	-	0.16	12.1	0.0	0.23	11.6	0.0	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1724)
DUF591	PF04569.14	gi|345005165|ref|YP_004808018.1|	-	0.048	13.7	0.3	0.12	12.4	0.2	1.7	2	0	0	2	2	2	0	Protein	of	unknown	function
Dimer_Tnp_hAT	PF05699.14	gi|345005165|ref|YP_004808018.1|	-	0.098	12.5	0.1	0.13	12.0	0.1	1.2	1	0	0	1	1	1	0	hAT	family	C-terminal	dimerisation	region
DUF3040	PF11239.8	gi|345005165|ref|YP_004808018.1|	-	1.1	9.6	6.1	0.29	11.4	1.0	2.0	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF3040)
PEP-CTERM	PF07589.11	gi|345005165|ref|YP_004808018.1|	-	2	8.6	10.4	3.1	8.0	1.1	3.1	2	1	0	2	2	2	0	PEP-CTERM	motif
RimK	PF08443.11	gi|345005166|ref|YP_004808019.1|	-	3.9e-24	85.3	0.0	6.2e-24	84.6	0.0	1.2	1	0	0	1	1	1	1	RimK-like	ATP-grasp	domain
Zn_protease	PF05618.11	gi|345005166|ref|YP_004808019.1|	-	1.2e-09	38.1	0.2	3.3e-07	30.3	0.0	2.3	1	1	1	2	2	2	2	Putative	ATP-dependant	zinc	protease
GSH-S_ATP	PF02955.16	gi|345005166|ref|YP_004808019.1|	-	3.2e-05	23.4	0.0	6.8e-05	22.3	0.0	1.6	1	1	0	1	1	1	1	Prokaryotic	glutathione	synthetase,	ATP-grasp	domain
ATP-grasp_3	PF02655.14	gi|345005166|ref|YP_004808019.1|	-	0.00018	21.6	0.0	0.0006	19.9	0.0	1.9	1	1	0	1	1	1	1	ATP-grasp	domain
gag-asp_proteas	PF13975.6	gi|345005166|ref|YP_004808019.1|	-	0.0002	21.8	0.2	0.00046	20.7	0.2	1.7	1	0	0	1	1	1	1	gag-polyprotein	putative	aspartyl	protease
Asp_protease_2	PF13650.6	gi|345005166|ref|YP_004808019.1|	-	0.0014	19.2	0.5	0.004	17.8	0.5	1.8	1	0	0	1	1	1	1	Aspartyl	protease
ATP-grasp	PF02222.22	gi|345005166|ref|YP_004808019.1|	-	0.019	14.6	0.0	0.031	13.9	0.0	1.3	1	0	0	1	1	1	0	ATP-grasp	domain
ATPgrasp_YheCD	PF14398.6	gi|345005166|ref|YP_004808019.1|	-	0.093	12.0	0.0	0.38	9.9	0.0	1.9	1	1	0	1	1	1	0	YheC/D	like	ATP-grasp
DUF5488	PF17590.2	gi|345005166|ref|YP_004808019.1|	-	0.16	11.7	0.0	0.31	10.8	0.0	1.4	1	0	0	1	1	1	0	Family	of	unknown	function	(DUF5488)
HhH-GPD	PF00730.25	gi|345005167|ref|YP_004808020.1|	-	7e-19	68.3	0.0	1e-18	67.8	0.0	1.2	1	0	0	1	1	1	1	HhH-GPD	superfamily	base	excision	DNA	repair	protein
Lactamase_B_2	PF12706.7	gi|345005168|ref|YP_004808021.1|	-	3e-19	69.3	0.8	3.7e-19	69.1	0.8	1.1	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
Lactamase_B	PF00753.27	gi|345005168|ref|YP_004808021.1|	-	7.9e-09	35.8	5.1	7e-08	32.7	5.1	2.0	1	1	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Lactamase_B_3	PF13483.6	gi|345005168|ref|YP_004808021.1|	-	0.027	14.4	0.2	0.055	13.4	0.2	1.5	1	1	0	1	1	1	0	Beta-lactamase	superfamily	domain
NAD_binding_10	PF13460.6	gi|345005169|ref|YP_004808022.1|	-	6.8e-29	101.1	0.0	1e-28	100.5	0.0	1.2	1	0	0	1	1	1	1	NAD(P)H-binding
Epimerase	PF01370.21	gi|345005169|ref|YP_004808022.1|	-	8.4e-19	68.0	0.0	5e-18	65.4	0.0	2.1	1	1	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
NmrA	PF05368.13	gi|345005169|ref|YP_004808022.1|	-	4.4e-12	46.1	0.0	6e-12	45.6	0.0	1.1	1	0	0	1	1	1	1	NmrA-like	family
3Beta_HSD	PF01073.19	gi|345005169|ref|YP_004808022.1|	-	4.7e-12	45.5	0.0	7.8e-11	41.5	0.0	2.1	1	1	1	2	2	2	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
RmlD_sub_bind	PF04321.17	gi|345005169|ref|YP_004808022.1|	-	6.2e-12	45.2	0.0	3.5e-10	39.5	0.0	2.1	1	1	0	1	1	1	1	RmlD	substrate	binding	domain
GDP_Man_Dehyd	PF16363.5	gi|345005169|ref|YP_004808022.1|	-	1.6e-07	31.0	0.0	3.2e-07	30.1	0.0	1.4	1	1	0	1	1	1	1	GDP-mannose	4,6	dehydratase
NAD_binding_4	PF07993.12	gi|345005169|ref|YP_004808022.1|	-	0.0011	18.2	0.0	0.045	12.9	0.0	2.3	2	1	0	2	2	2	1	Male	sterility	protein
Sacchrp_dh_NADP	PF03435.18	gi|345005169|ref|YP_004808022.1|	-	0.0012	19.1	0.0	0.0027	18.0	0.0	1.5	1	0	0	1	1	1	1	Saccharopine	dehydrogenase	NADP	binding	domain
Glyco_trans_4_4	PF13579.6	gi|345005169|ref|YP_004808022.1|	-	0.063	13.7	0.0	0.11	12.9	0.0	1.6	1	0	0	1	1	1	0	Glycosyl	transferase	4-like	domain
Polysacc_synt_2	PF02719.15	gi|345005169|ref|YP_004808022.1|	-	0.093	11.9	0.0	1.7	7.7	0.0	2.1	1	1	0	1	1	1	0	Polysaccharide	biosynthesis	protein
KR	PF08659.10	gi|345005169|ref|YP_004808022.1|	-	0.16	11.9	0.0	0.91	9.4	0.0	2.0	2	0	0	2	2	2	0	KR	domain
adh_short	PF00106.25	gi|345005169|ref|YP_004808022.1|	-	0.23	10.9	0.0	0.37	10.2	0.0	1.3	1	0	0	1	1	1	0	short	chain	dehydrogenase
Thymidylate_kin	PF02223.17	gi|345005170|ref|YP_004808023.1|	-	2.7e-35	121.7	0.0	3.2e-35	121.5	0.0	1.1	1	0	0	1	1	1	1	Thymidylate	kinase
AAA_33	PF13671.6	gi|345005170|ref|YP_004808023.1|	-	4.4e-05	23.7	0.0	0.00012	22.3	0.0	1.8	1	1	0	1	1	1	1	AAA	domain
dNK	PF01712.19	gi|345005170|ref|YP_004808023.1|	-	6.7e-05	22.8	0.0	0.00014	21.8	0.0	1.5	1	1	0	1	1	1	1	Deoxynucleoside	kinase
AAA_28	PF13521.6	gi|345005170|ref|YP_004808023.1|	-	0.0048	17.2	0.3	0.0064	16.7	0.3	1.3	1	1	0	1	1	1	1	AAA	domain
AAA_18	PF13238.6	gi|345005170|ref|YP_004808023.1|	-	0.013	16.0	0.0	0.03	14.9	0.0	1.9	1	1	1	2	2	2	0	AAA	domain
AAA_22	PF13401.6	gi|345005170|ref|YP_004808023.1|	-	0.081	13.2	0.0	0.28	11.5	0.0	2.3	1	1	0	1	1	1	0	AAA	domain
AsnC_trans_reg	PF01037.21	gi|345005172|ref|YP_004808025.1|	-	5.7e-06	26.2	0.0	6e-06	26.1	0.0	1.0	1	0	0	1	1	1	1	Lrp/AsnC	ligand	binding	domain
TrkA_N	PF02254.18	gi|345005173|ref|YP_004808026.1|	-	1.8e-25	89.4	0.5	2.7e-25	88.9	0.5	1.3	1	0	0	1	1	1	1	TrkA-N	domain
TrkA_C	PF02080.21	gi|345005173|ref|YP_004808026.1|	-	3.7e-12	45.9	0.2	1.1e-11	44.3	0.0	1.9	2	0	0	2	2	2	1	TrkA-C	domain
FAD_binding_3	PF01494.19	gi|345005173|ref|YP_004808026.1|	-	6.4e-06	25.6	0.1	6.7e-06	25.6	0.1	1.2	1	0	0	1	1	1	1	FAD	binding	domain
NAD_binding_7	PF13241.6	gi|345005173|ref|YP_004808026.1|	-	8.4e-06	26.2	0.2	1.4e-05	25.5	0.2	1.3	1	0	0	1	1	1	1	Putative	NAD(P)-binding
NAD_binding_8	PF13450.6	gi|345005173|ref|YP_004808026.1|	-	1.6e-05	25.0	0.7	3.6e-05	23.9	0.7	1.6	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
UDPG_MGDP_dh_N	PF03721.14	gi|345005173|ref|YP_004808026.1|	-	2e-05	24.3	0.1	3.2e-05	23.6	0.1	1.3	1	0	0	1	1	1	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
Pyr_redox_2	PF07992.14	gi|345005173|ref|YP_004808026.1|	-	0.00028	20.2	0.2	0.00036	19.9	0.2	1.2	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
XdhC_C	PF13478.6	gi|345005173|ref|YP_004808026.1|	-	0.0003	21.3	0.0	0.0037	17.8	0.1	2.1	2	0	0	2	2	2	1	XdhC	Rossmann	domain
3HCDH_N	PF02737.18	gi|345005173|ref|YP_004808026.1|	-	0.00032	20.6	0.3	0.00052	20.0	0.2	1.4	1	1	0	1	1	1	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
DAO	PF01266.24	gi|345005173|ref|YP_004808026.1|	-	0.00039	20.1	0.1	0.00045	19.9	0.1	1.3	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
AlaDh_PNT_C	PF01262.21	gi|345005173|ref|YP_004808026.1|	-	0.00099	18.5	0.5	0.0013	18.0	0.5	1.3	1	0	0	1	1	1	1	Alanine	dehydrogenase/PNT,	C-terminal	domain
IlvN	PF07991.12	gi|345005173|ref|YP_004808026.1|	-	0.0011	18.6	0.1	0.0023	17.5	0.1	1.6	1	1	0	1	1	1	1	Acetohydroxy	acid	isomeroreductase,	NADPH-binding	domain
ApbA	PF02558.16	gi|345005173|ref|YP_004808026.1|	-	0.0013	18.4	0.1	0.0019	17.9	0.1	1.3	1	0	0	1	1	1	1	Ketopantoate	reductase	PanE/ApbA
2-Hacid_dh_C	PF02826.19	gi|345005173|ref|YP_004808026.1|	-	0.0039	16.6	0.1	0.015	14.6	0.1	1.8	2	0	0	2	2	2	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
AdoHcyase_NAD	PF00670.21	gi|345005173|ref|YP_004808026.1|	-	0.0041	17.2	0.2	0.0076	16.3	0.2	1.5	1	0	0	1	1	1	1	S-adenosyl-L-homocysteine	hydrolase,	NAD	binding	domain
Pyr_redox	PF00070.27	gi|345005173|ref|YP_004808026.1|	-	0.0044	17.6	0.1	0.0097	16.4	0.1	1.6	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Epimerase	PF01370.21	gi|345005173|ref|YP_004808026.1|	-	0.016	14.7	0.1	0.021	14.3	0.1	1.2	1	0	0	1	1	1	0	NAD	dependent	epimerase/dehydratase	family
Thi4	PF01946.17	gi|345005173|ref|YP_004808026.1|	-	0.029	13.6	0.3	0.038	13.2	0.3	1.2	1	0	0	1	1	1	0	Thi4	family
NAD_binding_2	PF03446.15	gi|345005173|ref|YP_004808026.1|	-	0.042	14.0	0.1	0.089	13.0	0.1	1.7	2	0	0	2	2	2	0	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
Shikimate_DH	PF01488.20	gi|345005173|ref|YP_004808026.1|	-	0.087	12.9	0.1	0.14	12.2	0.1	1.4	1	0	0	1	1	1	0	Shikimate	/	quinate	5-dehydrogenase
Sacchrp_dh_NADP	PF03435.18	gi|345005173|ref|YP_004808026.1|	-	0.088	13.1	0.1	0.13	12.6	0.1	1.4	1	0	0	1	1	1	0	Saccharopine	dehydrogenase	NADP	binding	domain
ADH_zinc_N	PF00107.26	gi|345005173|ref|YP_004808026.1|	-	0.16	12.0	1.1	6	6.9	0.1	2.2	2	0	0	2	2	2	0	Zinc-binding	dehydrogenase
Glyco_trans_4_2	PF13477.6	gi|345005173|ref|YP_004808026.1|	-	0.24	11.4	0.0	0.57	10.2	0.0	1.6	1	0	0	1	1	1	0	Glycosyl	transferase	4-like
AsnC_trans_reg	PF01037.21	gi|345005174|ref|YP_004808027.1|	-	6.7e-12	45.2	0.1	1.2e-11	44.4	0.0	1.4	1	1	1	2	2	2	1	Lrp/AsnC	ligand	binding	domain
HTH_5	PF01022.20	gi|345005177|ref|YP_004808030.1|	-	0.051	13.5	0.4	4.4	7.3	0.0	2.2	2	0	0	2	2	2	0	Bacterial	regulatory	protein,	arsR	family
CPSase_L_D2	PF02786.17	gi|345005178|ref|YP_004808031.1|	-	3.3e-08	33.3	0.0	0.00084	18.9	0.0	2.5	2	0	0	2	2	2	2	Carbamoyl-phosphate	synthase	L	chain,	ATP	binding	domain
Dala_Dala_lig_C	PF07478.13	gi|345005178|ref|YP_004808031.1|	-	2.9e-05	23.7	0.2	0.00013	21.6	0.2	1.9	1	1	0	1	1	1	1	D-ala	D-ala	ligase	C-terminus
ATPgrasp_Ter	PF15632.6	gi|345005178|ref|YP_004808031.1|	-	7.9e-05	22.4	0.0	0.00015	21.5	0.0	1.4	1	0	0	1	1	1	1	ATP-grasp	in	the	biosynthetic	pathway	with	Ter	operon
ATP-grasp	PF02222.22	gi|345005178|ref|YP_004808031.1|	-	0.023	14.3	0.0	0.039	13.5	0.0	1.5	1	1	0	1	1	1	0	ATP-grasp	domain
ATP-grasp_3	PF02655.14	gi|345005178|ref|YP_004808031.1|	-	0.026	14.6	0.0	0.051	13.6	0.0	1.4	1	1	0	1	1	1	0	ATP-grasp	domain
Bac_luciferase	PF00296.20	gi|345005179|ref|YP_004808032.1|	-	2.8e-59	201.1	3.0	3.8e-59	200.7	3.0	1.1	1	0	0	1	1	1	1	Luciferase-like	monooxygenase
DSS1_SEM1	PF05160.13	gi|345005179|ref|YP_004808032.1|	-	0.062	13.4	2.0	0.14	12.2	2.0	1.6	1	0	0	1	1	1	0	DSS1/SEM1	family
Aldo_ket_red	PF00248.21	gi|345005181|ref|YP_004808034.1|	-	2.7e-19	69.5	0.0	3.4e-19	69.2	0.0	1.1	1	0	0	1	1	1	1	Aldo/keto	reductase	family
Peptidase_M20	PF01546.28	gi|345005182|ref|YP_004808035.1|	-	1.1e-21	77.5	0.1	2.1e-21	76.6	0.1	1.5	1	1	0	1	1	1	1	Peptidase	family	M20/M25/M40
M20_dimer	PF07687.14	gi|345005182|ref|YP_004808035.1|	-	2.3e-12	46.8	1.1	4.8e-12	45.8	1.1	1.5	1	0	0	1	1	1	1	Peptidase	dimerisation	domain
AstE_AspA	PF04952.14	gi|345005183|ref|YP_004808036.1|	-	1.3e-37	129.5	0.1	1.5e-37	129.2	0.1	1.0	1	0	0	1	1	1	1	Succinylglutamate	desuccinylase	/	Aspartoacylase	family
Peptidase_M14	PF00246.24	gi|345005183|ref|YP_004808036.1|	-	0.026	14.3	0.0	0.51	10.1	0.1	2.0	1	1	1	2	2	2	0	Zinc	carboxypeptidase
GYD	PF08734.11	gi|345005184|ref|YP_004808037.1|	-	2.6e-23	81.8	0.1	2.8e-23	81.7	0.1	1.0	1	0	0	1	1	1	1	GYD	domain
Amidohydro_1	PF01979.20	gi|345005185|ref|YP_004808038.1|	-	6e-62	209.9	3.7	7.1e-62	209.7	3.7	1.0	1	0	0	1	1	1	1	Amidohydrolase	family
A_deaminase	PF00962.22	gi|345005185|ref|YP_004808038.1|	-	0.00063	19.2	0.0	0.0011	18.4	0.0	1.3	1	0	0	1	1	1	1	Adenosine/AMP	deaminase
DUF1427	PF07235.11	gi|345005186|ref|YP_004808039.1|	-	0.035	14.1	4.0	0.038	13.9	4.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1427)
Pro_isomerase	PF00160.21	gi|345005187|ref|YP_004808040.1|	-	8.5e-48	162.6	0.0	1e-47	162.4	0.0	1.1	1	0	0	1	1	1	1	Cyclophilin	type	peptidyl-prolyl	cis-trans	isomerase/CLD
acVLRF1	PF18859.1	gi|345005189|ref|YP_004808042.1|	-	1e-33	116.4	6.9	1e-33	116.4	6.9	2.0	2	1	0	2	2	2	1	Actinobacteria/chloroflexi	VLRF1	release	factor
baeRF_family10	PF18854.1	gi|345005189|ref|YP_004808042.1|	-	6.1e-13	49.2	4.6	6.1e-13	49.2	4.6	2.2	2	1	0	2	2	2	1	Bacterial	archaeo-eukaryotic	release	factor	family	10
KASH_CCD	PF14662.6	gi|345005189|ref|YP_004808042.1|	-	0.00015	21.7	1.2	0.00015	21.7	1.2	1.5	2	0	0	2	2	1	1	Coiled-coil	region	of	CCDC155	or	KASH
baeRF_family2	PF18844.1	gi|345005189|ref|YP_004808042.1|	-	0.00015	21.8	2.9	0.00015	21.8	2.9	2.6	2	1	0	2	2	2	1	Bacterial	archaeo-eukaryotic	release	factor	family	2
She9_MDM33	PF05546.11	gi|345005189|ref|YP_004808042.1|	-	0.00049	19.9	1.9	0.00049	19.9	1.9	1.7	2	0	0	2	2	2	1	She9	/	Mdm33	family
eRF1_2	PF03464.15	gi|345005189|ref|YP_004808042.1|	-	0.0011	19.3	0.0	0.0017	18.6	0.0	1.3	1	0	0	1	1	1	1	eRF1	domain	2
Tropomyosin_1	PF12718.7	gi|345005189|ref|YP_004808042.1|	-	0.0031	17.7	8.2	0.0054	16.9	4.0	2.2	2	0	0	2	2	2	1	Tropomyosin	like
Laminin_II	PF06009.12	gi|345005189|ref|YP_004808042.1|	-	0.006	16.6	1.3	0.0066	16.5	0.3	1.6	2	0	0	2	2	1	1	Laminin	Domain	II
Dynamitin	PF04912.14	gi|345005189|ref|YP_004808042.1|	-	0.011	15.1	0.5	0.02	14.3	0.5	1.4	1	0	0	1	1	1	0	Dynamitin
DUF1192	PF06698.11	gi|345005189|ref|YP_004808042.1|	-	0.015	15.3	6.8	0.027	14.5	3.1	2.6	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1192)
TSC22	PF01166.18	gi|345005189|ref|YP_004808042.1|	-	0.021	15.1	0.9	6.4	7.2	0.1	2.4	2	0	0	2	2	2	0	TSC-22/dip/bun	family
APG6_N	PF17675.1	gi|345005189|ref|YP_004808042.1|	-	0.022	15.3	1.7	0.022	15.3	1.7	2.3	2	1	0	2	2	2	0	Apg6	coiled-coil	region
DUF1515	PF07439.11	gi|345005189|ref|YP_004808042.1|	-	0.04	13.9	0.6	0.093	12.8	0.6	1.7	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1515)
OmpH	PF03938.14	gi|345005189|ref|YP_004808042.1|	-	0.062	13.6	1.2	0.58	10.5	0.4	2.0	2	0	0	2	2	2	0	Outer	membrane	protein	(OmpH-like)
Pox_A_type_inc	PF04508.12	gi|345005189|ref|YP_004808042.1|	-	0.066	13.1	6.5	0.36	10.8	0.9	3.0	3	0	0	3	3	2	0	Viral	A-type	inclusion	protein	repeat
Syntaxin	PF00804.25	gi|345005189|ref|YP_004808042.1|	-	0.067	12.9	1.0	0.13	12.0	1.0	1.4	1	0	0	1	1	1	0	Syntaxin
baeRF_family5	PF18846.1	gi|345005189|ref|YP_004808042.1|	-	0.068	13.4	1.0	0.2	11.8	0.1	1.9	2	0	0	2	2	2	0	Bacterial	archaeo-eukaryotic	release	factor	family	5
YlqD	PF11068.8	gi|345005189|ref|YP_004808042.1|	-	0.092	13.1	0.5	0.092	13.1	0.5	1.5	2	0	0	2	2	1	0	YlqD	protein
baeRF_family12	PF18856.1	gi|345005189|ref|YP_004808042.1|	-	0.15	12.6	0.2	0.15	12.6	0.2	2.3	2	1	1	3	3	3	0	Bacterial	archaeo-eukaryotic	release	factor	family	12
HR1	PF02185.16	gi|345005189|ref|YP_004808042.1|	-	0.16	12.1	3.3	0.39	10.9	3.3	1.7	1	1	0	1	1	1	0	Hr1	repeat
V_ATPase_I	PF01496.19	gi|345005189|ref|YP_004808042.1|	-	0.2	9.5	0.2	0.29	9.0	0.2	1.1	1	0	0	1	1	1	0	V-type	ATPase	116kDa	subunit	family
Not3	PF04065.15	gi|345005189|ref|YP_004808042.1|	-	0.21	11.0	1.5	0.33	10.3	0.3	1.7	2	0	0	2	2	2	0	Not1	N-terminal	domain,	CCR4-Not	complex	component
DUF1664	PF07889.12	gi|345005189|ref|YP_004808042.1|	-	0.27	11.3	0.9	0.49	10.4	0.1	1.7	2	0	0	2	2	1	0	Protein	of	unknown	function	(DUF1664)
Tropomyosin	PF00261.20	gi|345005189|ref|YP_004808042.1|	-	0.33	10.3	10.5	0.057	12.8	5.1	2.0	2	0	0	2	2	2	0	Tropomyosin
Csm1_N	PF18504.1	gi|345005189|ref|YP_004808042.1|	-	0.37	11.2	3.4	5.8	7.3	0.4	2.6	1	1	1	2	2	2	0	Csm1	N-terminal	domain
CENP-F_leu_zip	PF10473.9	gi|345005189|ref|YP_004808042.1|	-	0.53	10.3	5.5	0.15	12.1	1.6	1.9	2	0	0	2	2	2	0	Leucine-rich	repeats	of	kinetochore	protein	Cenp-F/LEK1
Mto2_bdg	PF12808.7	gi|345005189|ref|YP_004808042.1|	-	0.91	9.9	5.5	0.32	11.3	1.9	2.1	2	0	0	2	2	2	0	Micro-tubular	organiser	Mto1	C-term	Mto2-binding	region
ABC_tran_CTD	PF16326.5	gi|345005189|ref|YP_004808042.1|	-	1.2	9.4	11.0	0.69	10.2	4.3	3.0	2	1	1	3	3	3	0	ABC	transporter	C-terminal	domain
Cnn_1N	PF07989.11	gi|345005189|ref|YP_004808042.1|	-	1.3	9.3	3.9	0.48	10.6	0.6	1.9	2	0	0	2	2	2	0	Centrosomin	N-terminal	motif	1
Seryl_tRNA_N	PF02403.22	gi|345005189|ref|YP_004808042.1|	-	1.9	8.8	5.0	0.4	10.9	1.2	1.8	2	0	0	2	2	1	0	Seryl-tRNA	synthetase	N-terminal	domain
Jnk-SapK_ap_N	PF09744.9	gi|345005189|ref|YP_004808042.1|	-	2.6	8.2	8.4	1.5	9.0	5.0	2.2	2	1	0	2	2	2	0	JNK_SAPK-associated	protein-1
ZapB	PF06005.12	gi|345005189|ref|YP_004808042.1|	-	3.1	8.3	7.4	6.7	7.2	4.1	2.6	2	1	1	3	3	2	0	Cell	division	protein	ZapB
CLZ	PF16526.5	gi|345005189|ref|YP_004808042.1|	-	3.1	8.2	6.7	5	7.6	0.5	3.1	3	0	0	3	3	3	0	C-terminal	leucine	zipper	domain	of	cyclic	nucleotide-gated	channels
TPR_MLP1_2	PF07926.12	gi|345005189|ref|YP_004808042.1|	-	6.3	6.9	10.9	1.2	9.3	5.8	2.1	2	0	0	2	2	2	0	TPR/MLP1/MLP2-like	protein
Cep57_MT_bd	PF06657.13	gi|345005189|ref|YP_004808042.1|	-	7.5	7.1	7.1	6.8	7.2	2.1	2.5	2	1	0	2	2	2	0	Centrosome	microtubule-binding	domain	of	Cep57
Prefoldin_2	PF01920.20	gi|345005189|ref|YP_004808042.1|	-	9	6.3	6.6	18	5.3	0.3	3.0	2	1	1	3	3	3	0	Prefoldin	subunit
SlyX	PF04102.12	gi|345005189|ref|YP_004808042.1|	-	10	6.9	6.7	48	4.7	0.2	2.9	2	1	0	2	2	1	0	SlyX
DUF1611	PF07755.11	gi|345005191|ref|YP_004808044.1|	-	2.3e-69	232.7	0.9	3.2e-69	232.2	0.9	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1611_C)	P-loop	domain
DUF1611_N	PF17396.2	gi|345005191|ref|YP_004808044.1|	-	7.2e-28	96.7	0.1	2.3e-27	95.0	0.1	1.9	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF1611_N)	Rossmann-like	domain
MR_MLE_C	PF13378.6	gi|345005192|ref|YP_004808045.1|	-	7.3e-41	140.1	0.5	1e-40	139.7	0.5	1.2	1	0	0	1	1	1	1	Enolase	C-terminal	domain-like
MR_MLE_N	PF02746.16	gi|345005192|ref|YP_004808045.1|	-	4.5e-13	49.4	0.1	7.1e-13	48.8	0.1	1.3	1	0	0	1	1	1	1	Mandelate	racemase	/	muconate	lactonizing	enzyme,	N-terminal	domain
MAAL_C	PF07476.11	gi|345005192|ref|YP_004808045.1|	-	0.0059	15.8	0.0	0.013	14.7	0.0	1.5	1	0	0	1	1	1	1	Methylaspartate	ammonia-lyase	C-terminus
PspA_IM30	PF04012.12	gi|345005194|ref|YP_004808047.1|	-	1.1e-30	106.9	32.5	1.4e-30	106.5	32.5	1.1	1	0	0	1	1	1	1	PspA/IM30	family
AAA_13	PF13166.6	gi|345005194|ref|YP_004808047.1|	-	0.0029	16.4	19.3	0.0035	16.1	19.3	1.2	1	0	0	1	1	1	1	AAA	domain
BLOC1_2	PF10046.9	gi|345005194|ref|YP_004808047.1|	-	0.0061	16.8	18.2	0.81	10.0	1.3	3.3	1	1	2	3	3	3	2	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
DUF5082	PF16888.5	gi|345005194|ref|YP_004808047.1|	-	0.017	15.4	7.2	0.017	15.4	7.2	2.9	2	1	1	3	3	3	0	Domain	of	unknown	function	(DUF5082)
DUF1664	PF07889.12	gi|345005194|ref|YP_004808047.1|	-	0.017	15.1	3.4	0.017	15.1	3.4	2.7	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF1664)
Flagellin_C	PF00700.21	gi|345005194|ref|YP_004808047.1|	-	0.059	13.7	11.3	1.5	9.2	0.1	3.9	1	1	3	4	4	4	0	Bacterial	flagellin	C-terminal	helical	region
Spc7	PF08317.11	gi|345005194|ref|YP_004808047.1|	-	0.064	12.1	34.1	0.062	12.2	17.3	2.3	1	1	1	2	2	2	0	Spc7	kinetochore	protein
DUF3450	PF11932.8	gi|345005194|ref|YP_004808047.1|	-	0.081	12.2	25.5	0.75	9.0	7.4	2.6	1	1	0	2	2	2	0	Protein	of	unknown	function	(DUF3450)
YabA	PF06156.13	gi|345005194|ref|YP_004808047.1|	-	0.13	12.9	23.5	0.16	12.6	5.1	3.1	1	1	2	3	3	3	0	Initiation	control	protein	YabA
DUF3584	PF12128.8	gi|345005194|ref|YP_004808047.1|	-	0.19	9.2	26.5	0.24	8.9	26.5	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3584)
DUF3535	PF12054.8	gi|345005194|ref|YP_004808047.1|	-	0.22	10.7	7.3	0.37	10.0	7.3	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3535)
ERM	PF00769.19	gi|345005194|ref|YP_004808047.1|	-	0.28	11.0	40.9	0.39	10.5	40.9	1.3	1	0	0	1	1	1	0	Ezrin/radixin/moesin	family
DUF812	PF05667.11	gi|345005194|ref|YP_004808047.1|	-	0.36	9.6	25.9	0.54	9.1	25.9	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF812)
Snf7	PF03357.21	gi|345005194|ref|YP_004808047.1|	-	0.62	9.6	45.3	0.027	14.1	18.3	3.5	1	1	2	3	3	3	0	Snf7
DivIC	PF04977.15	gi|345005194|ref|YP_004808047.1|	-	0.69	9.7	25.5	0.22	11.3	5.9	3.7	2	1	0	3	3	3	0	Septum	formation	initiator
Baculo_PEP_C	PF04513.12	gi|345005194|ref|YP_004808047.1|	-	1.3	9.0	4.2	4.3	7.4	3.7	2.2	1	1	0	1	1	1	0	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
ExsD	PF16806.5	gi|345005194|ref|YP_004808047.1|	-	1.7	8.5	10.1	3.3	7.6	10.1	1.6	1	1	0	1	1	1	0	Antiactivator	protein	ExsD
KASH_CCD	PF14662.6	gi|345005194|ref|YP_004808047.1|	-	2.9	7.7	32.6	2	8.2	25.8	3.1	1	1	1	2	2	2	0	Coiled-coil	region	of	CCDC155	or	KASH
COG6	PF06419.11	gi|345005194|ref|YP_004808047.1|	-	2.9	6.0	17.6	0.067	11.4	1.2	2.2	1	1	1	2	2	2	0	Conserved	oligomeric	complex	COG6
DUF3573	PF12097.8	gi|345005194|ref|YP_004808047.1|	-	2.9	6.6	5.8	1.2	7.9	1.2	1.9	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF3573)
Csm1_N	PF18504.1	gi|345005194|ref|YP_004808047.1|	-	3	8.3	22.2	1.3	9.5	4.2	4.1	1	1	2	4	4	4	0	Csm1	N-terminal	domain
FOXP-CC	PF16159.5	gi|345005194|ref|YP_004808047.1|	-	3.6	8.3	7.1	2.8	8.6	0.2	2.7	2	1	0	2	2	2	0	FOXP	coiled-coil	domain
STAT_alpha	PF01017.20	gi|345005194|ref|YP_004808047.1|	-	5.4	6.9	22.1	2.9	7.7	5.8	2.6	1	1	1	2	2	2	0	STAT	protein,	all-alpha	domain
ADIP	PF11559.8	gi|345005194|ref|YP_004808047.1|	-	5.6	7.0	28.2	16	5.6	11.2	2.6	1	1	1	2	2	2	0	Afadin-	and	alpha	-actinin-Binding
FliD_N	PF02465.18	gi|345005194|ref|YP_004808047.1|	-	7.7	7.3	12.6	61	4.4	6.9	3.4	1	1	1	2	2	2	0	Flagellar	hook-associated	protein	2	N-terminus
TMPIT	PF07851.13	gi|345005194|ref|YP_004808047.1|	-	7.8	5.6	19.7	0.29	10.3	5.4	2.1	1	1	1	2	2	2	0	TMPIT-like	protein
DUF948	PF06103.11	gi|345005194|ref|YP_004808047.1|	-	9.1	6.6	9.6	35	4.7	0.4	3.5	1	1	2	3	3	3	0	Bacterial	protein	of	unknown	function	(DUF948)
ALMT	PF11744.8	gi|345005194|ref|YP_004808047.1|	-	9.2	5.0	10.4	10	4.8	10.4	1.3	1	0	0	1	1	1	0	Aluminium	activated	malate	transporter
YlqD	PF11068.8	gi|345005194|ref|YP_004808047.1|	-	9.7	6.6	25.0	1.7e+03	-0.7	25.0	2.6	1	1	0	1	1	1	0	YlqD	protein
Abhydrolase_6	PF12697.7	gi|345005195|ref|YP_004808048.1|	-	0.0012	19.5	2.3	0.0014	19.2	2.3	1.1	1	0	0	1	1	1	1	Alpha/beta	hydrolase	family
Peptidase_S15	PF02129.18	gi|345005195|ref|YP_004808048.1|	-	0.017	14.8	0.5	0.031	13.9	0.3	1.3	1	1	0	1	1	1	0	X-Pro	dipeptidyl-peptidase	(S15	family)
DLH	PF01738.18	gi|345005195|ref|YP_004808048.1|	-	0.057	13.0	0.0	0.093	12.3	0.0	1.4	1	0	0	1	1	1	0	Dienelactone	hydrolase	family
NEMP	PF10225.9	gi|345005196|ref|YP_004808049.1|	-	0.089	12.4	4.0	0.13	11.9	4.0	1.4	1	1	0	1	1	1	0	NEMP	family
DUF4271	PF14093.6	gi|345005196|ref|YP_004808049.1|	-	0.12	12.3	4.0	0.14	12.1	4.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4271)
DUF1129	PF06570.11	gi|345005196|ref|YP_004808049.1|	-	4.2	6.8	6.9	5.3	6.5	6.9	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1129)
HTH_23	PF13384.6	gi|345005197|ref|YP_004808050.1|	-	1.7e-05	24.5	0.1	3.4e-05	23.5	0.1	1.4	1	0	0	1	1	1	1	Homeodomain-like	domain
TrmB	PF01978.19	gi|345005197|ref|YP_004808050.1|	-	0.00055	19.8	0.0	0.0009	19.1	0.0	1.3	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_29	PF13551.6	gi|345005197|ref|YP_004808050.1|	-	0.0032	17.4	0.0	0.0054	16.7	0.0	1.3	1	0	0	1	1	1	1	Winged	helix-turn	helix
HTH_28	PF13518.6	gi|345005197|ref|YP_004808050.1|	-	0.013	15.6	0.3	0.037	14.1	0.1	1.8	2	0	0	2	2	2	0	Helix-turn-helix	domain
MarR	PF01047.22	gi|345005197|ref|YP_004808050.1|	-	0.16	11.9	0.0	0.27	11.2	0.0	1.3	1	0	0	1	1	1	0	MarR	family
Aminoglyc_resit	PF10706.9	gi|345005198|ref|YP_004808051.1|	-	4.6e-05	23.2	0.0	0.028	14.2	0.0	2.2	1	1	0	2	2	2	2	Aminoglycoside-2''-adenylyltransferase
NTP_transf_5	PF14907.6	gi|345005198|ref|YP_004808051.1|	-	0.0013	18.4	0.1	0.0017	18.0	0.1	1.3	1	0	0	1	1	1	1	Uncharacterised	nucleotidyltransferase
AbiEii	PF08843.11	gi|345005198|ref|YP_004808051.1|	-	0.0068	16.4	1.0	0.021	14.8	1.0	1.9	1	1	0	1	1	1	1	Nucleotidyl	transferase	AbiEii	toxin,	Type	IV	TA	system
DUF3512	PF12024.8	gi|345005198|ref|YP_004808051.1|	-	0.14	11.6	0.1	2.6	7.5	0.0	2.1	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF3512)
OGG_N	PF07934.12	gi|345005199|ref|YP_004808052.1|	-	0.014	15.5	0.0	0.014	15.4	0.0	1.1	1	0	0	1	1	1	0	8-oxoguanine	DNA	glycosylase,	N-terminal	domain
Peptidase_M78	PF06114.13	gi|345005199|ref|YP_004808052.1|	-	0.026	14.5	0.1	0.03	14.2	0.1	1.2	1	0	0	1	1	1	0	IrrE	N-terminal-like	domain
DDE_Tnp_1	PF01609.21	gi|345005201|ref|YP_004808054.1|	-	0.016	14.9	0.0	0.02	14.5	0.0	1.2	1	0	0	1	1	1	0	Transposase	DDE	domain
OrfB_Zn_ribbon	PF07282.11	gi|345005202|ref|YP_004808055.1|	-	3.1e-20	71.8	0.4	6.7e-20	70.8	0.4	1.6	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
OrfB_IS605	PF01385.19	gi|345005202|ref|YP_004808055.1|	-	6.9e-07	29.5	0.0	2.1e-06	28.0	0.0	1.8	2	0	0	2	2	2	1	Probable	transposase
IBR	PF01485.21	gi|345005202|ref|YP_004808055.1|	-	0.01	16.0	0.7	0.01	16.0	0.7	2.2	2	0	0	2	2	2	0	IBR	domain,	a	half	RING-finger	domain
DUF2387	PF09526.10	gi|345005202|ref|YP_004808055.1|	-	0.074	13.2	0.3	0.24	11.6	0.3	1.8	1	0	0	1	1	1	0	Probable	metal-binding	protein	(DUF2387)
TFIIS_C	PF01096.18	gi|345005203|ref|YP_004808056.1|	-	1.6e-15	56.6	1.8	1.6e-15	56.6	1.8	3.1	3	1	0	3	3	3	1	Transcription	factor	S-II	(TFIIS)
RNA_POL_M_15KD	PF02150.16	gi|345005203|ref|YP_004808056.1|	-	1.9e-07	30.8	7.1	1e-06	28.5	0.8	3.0	3	0	0	3	3	3	1	RNA	polymerases	M/15	Kd	subunit
DZR	PF12773.7	gi|345005203|ref|YP_004808056.1|	-	0.0007	19.6	9.5	0.0094	16.0	1.0	2.7	2	1	0	2	2	2	2	Double	zinc	ribbon
OrfB_Zn_ribbon	PF07282.11	gi|345005203|ref|YP_004808056.1|	-	0.0013	18.6	11.0	0.049	13.6	1.6	2.6	2	1	0	2	2	2	2	Putative	transposase	DNA-binding	domain
A2L_zn_ribbon	PF08792.10	gi|345005203|ref|YP_004808056.1|	-	0.0013	18.3	10.6	0.41	10.4	2.0	4.1	3	1	0	3	3	3	1	A2L	zinc	ribbon	domain
zf-RING_7	PF02591.15	gi|345005203|ref|YP_004808056.1|	-	0.0043	17.2	2.2	9.2	6.6	0.1	3.4	3	0	0	3	3	3	0	C4-type	zinc	ribbon	domain
Prok-RING_1	PF14446.6	gi|345005203|ref|YP_004808056.1|	-	0.0065	16.4	7.5	0.012	15.5	1.6	2.8	3	0	0	3	3	3	1	Prokaryotic	RING	finger	family	1
zinc_ribbon_4	PF13717.6	gi|345005203|ref|YP_004808056.1|	-	0.0075	16.2	6.2	0.66	10.0	0.0	3.5	3	1	0	3	3	3	2	zinc-ribbon	domain
zf-ribbon_3	PF13248.6	gi|345005203|ref|YP_004808056.1|	-	0.017	14.5	13.1	0.087	12.3	0.7	3.3	3	0	0	3	3	3	0	zinc-ribbon	domain
Zn_Tnp_IS1595	PF12760.7	gi|345005203|ref|YP_004808056.1|	-	0.021	14.8	0.7	0.021	14.8	0.7	2.5	2	1	0	2	2	2	0	Transposase	zinc-ribbon	domain
HypA	PF01155.19	gi|345005203|ref|YP_004808056.1|	-	0.039	14.0	8.3	0.58	10.2	0.7	2.6	2	1	0	2	2	2	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
DNA_RNApol_7kD	PF03604.13	gi|345005203|ref|YP_004808056.1|	-	0.042	13.5	11.3	0.3	10.8	0.1	3.6	3	1	0	3	3	3	0	DNA	directed	RNA	polymerase,	7	kDa	subunit
TF_Zn_Ribbon	PF08271.12	gi|345005203|ref|YP_004808056.1|	-	0.051	13.1	11.8	7	6.2	0.0	4.2	3	1	1	4	4	4	0	TFIIB	zinc-binding
zinc-ribbons_6	PF07191.12	gi|345005203|ref|YP_004808056.1|	-	0.13	12.3	8.0	0.3	11.1	0.6	2.4	2	1	0	2	2	2	0	zinc-ribbons
ADK_lid	PF05191.14	gi|345005203|ref|YP_004808056.1|	-	0.29	11.1	10.6	8.8	6.4	1.5	3.6	3	1	1	4	4	4	0	Adenylate	kinase,	active	site	lid
Rubredoxin_2	PF18073.1	gi|345005203|ref|YP_004808056.1|	-	0.31	10.8	13.5	2.5	7.9	0.4	4.1	4	0	0	4	4	4	0	Rubredoxin	metal	binding	domain
Nudix_N_2	PF14803.6	gi|345005203|ref|YP_004808056.1|	-	0.34	10.9	13.6	2.6	8.1	2.9	3.8	2	2	0	2	2	2	0	Nudix	N-terminal
zinc_ribbon_2	PF13240.6	gi|345005203|ref|YP_004808056.1|	-	0.37	10.6	11.4	4.3	7.2	0.2	3.9	4	0	0	4	4	4	0	zinc-ribbon	domain
TackOD1	PF18551.1	gi|345005203|ref|YP_004808056.1|	-	0.42	10.3	6.5	0.88	9.2	0.8	2.4	2	1	0	2	2	2	0	Thaumarchaeal	output	domain	1
UPF0547	PF10571.9	gi|345005203|ref|YP_004808056.1|	-	0.46	10.6	12.7	0.66	10.1	0.1	3.6	4	0	0	4	4	3	0	Uncharacterised	protein	family	UPF0547
zf_UBZ	PF18439.1	gi|345005203|ref|YP_004808056.1|	-	0.49	10.0	13.3	2.5	7.8	0.1	4.0	3	1	1	4	4	4	0	Ubiquitin-Binding	Zinc	Finger
GFA	PF04828.14	gi|345005203|ref|YP_004808056.1|	-	0.58	10.5	7.6	11	6.5	0.5	3.4	1	1	2	3	3	3	0	Glutathione-dependent	formaldehyde-activating	enzyme
zf-ACC	PF17848.1	gi|345005203|ref|YP_004808056.1|	-	0.94	9.6	10.3	10	6.3	1.1	4.0	3	1	0	3	3	3	0	Acetyl-coA	carboxylase	zinc	finger	domain
Zn_ribbon_recom	PF13408.6	gi|345005203|ref|YP_004808056.1|	-	0.94	10.0	10.1	15	6.2	0.1	3.8	3	1	1	4	4	4	0	Recombinase	zinc	beta	ribbon	domain
DUF2318	PF10080.9	gi|345005203|ref|YP_004808056.1|	-	1	9.5	9.5	3.1	8.0	2.2	2.9	1	1	1	2	2	2	0	Predicted	membrane	protein	(DUF2318)
Lar_restr_allev	PF14354.6	gi|345005203|ref|YP_004808056.1|	-	2	8.8	17.4	1.2	9.5	0.3	3.9	1	1	2	3	3	3	0	Restriction	alleviation	protein	Lar
zinc_ribbon_13	PF09855.9	gi|345005203|ref|YP_004808056.1|	-	3.6	7.8	9.2	5.6	7.2	0.0	3.1	3	1	0	4	4	4	0	Nucleic-acid-binding	protein	containing	Zn-ribbon	domain	(DUF2082)
C1_1	PF00130.22	gi|345005203|ref|YP_004808056.1|	-	3.7	7.5	10.4	1.3	8.9	1.1	2.8	2	1	0	2	2	2	0	Phorbol	esters/diacylglycerol	binding	domain	(C1	domain)
zf-trcl	PF13451.6	gi|345005203|ref|YP_004808056.1|	-	8.6	6.3	15.4	41	4.2	5.4	4.0	3	1	0	3	3	3	0	Probable	zinc-ribbon	domain
Baculo_PEP_C	PF04513.12	gi|345005205|ref|YP_004808058.1|	-	0.0011	19.0	2.4	0.014	15.4	0.3	2.2	1	1	1	2	2	2	2	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
ZapB	PF06005.12	gi|345005205|ref|YP_004808058.1|	-	0.0012	19.2	2.7	0.15	12.5	0.9	3.1	3	1	0	3	3	3	1	Cell	division	protein	ZapB
Apolipoprotein	PF01442.18	gi|345005205|ref|YP_004808058.1|	-	0.0031	17.4	12.5	0.0048	16.8	12.5	1.3	1	0	0	1	1	1	1	Apolipoprotein	A1/A4/E	domain
DUF1664	PF07889.12	gi|345005205|ref|YP_004808058.1|	-	0.004	17.2	1.2	0.045	13.8	0.0	2.2	1	1	1	2	2	2	2	Protein	of	unknown	function	(DUF1664)
TSNAXIP1_N	PF15739.5	gi|345005205|ref|YP_004808058.1|	-	0.0058	17.0	0.5	2.8	8.3	0.0	2.4	2	0	0	2	2	2	1	Translin-associated	factor	X-interacting	N-terminus
BLOC1_2	PF10046.9	gi|345005205|ref|YP_004808058.1|	-	0.0062	16.8	1.3	0.49	10.7	0.2	3.1	2	1	1	3	3	3	1	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
TPR_MLP1_2	PF07926.12	gi|345005205|ref|YP_004808058.1|	-	0.0075	16.3	2.4	0.15	12.1	0.0	2.4	2	1	0	2	2	2	1	TPR/MLP1/MLP2-like	protein
Prefoldin_2	PF01920.20	gi|345005205|ref|YP_004808058.1|	-	0.013	15.4	2.5	10	6.2	0.6	3.1	2	1	1	3	3	3	0	Prefoldin	subunit
Seryl_tRNA_N	PF02403.22	gi|345005205|ref|YP_004808058.1|	-	0.014	15.6	2.6	0.87	9.8	0.3	2.8	2	1	1	3	3	3	0	Seryl-tRNA	synthetase	N-terminal	domain
Laminin_II	PF06009.12	gi|345005205|ref|YP_004808058.1|	-	0.017	15.1	1.4	1.9	8.5	0.1	2.4	2	1	0	2	2	2	0	Laminin	Domain	II
HypA	PF01155.19	gi|345005205|ref|YP_004808058.1|	-	0.025	14.6	0.0	0.046	13.7	0.0	1.5	1	0	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
DUF948	PF06103.11	gi|345005205|ref|YP_004808058.1|	-	0.049	13.9	3.6	0.19	12.0	0.1	2.6	2	1	0	2	2	2	0	Bacterial	protein	of	unknown	function	(DUF948)
NPV_P10	PF05531.12	gi|345005205|ref|YP_004808058.1|	-	0.051	14.0	5.5	4.5	7.8	0.2	3.3	1	1	2	3	3	3	0	Nucleopolyhedrovirus	P10	protein
DUF3584	PF12128.8	gi|345005205|ref|YP_004808058.1|	-	0.051	11.1	4.4	0.27	8.7	0.1	1.9	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF3584)
Csm1_N	PF18504.1	gi|345005205|ref|YP_004808058.1|	-	0.06	13.7	3.3	1.2	9.5	0.5	3.0	3	1	0	3	3	3	0	Csm1	N-terminal	domain
Dynactin_p22	PF07426.11	gi|345005205|ref|YP_004808058.1|	-	0.063	13.1	0.1	6.5	6.6	0.0	2.3	2	0	0	2	2	2	0	Dynactin	subunit	p22
Zn-ribbon_8	PF09723.10	gi|345005205|ref|YP_004808058.1|	-	0.066	13.3	1.1	0.15	12.2	1.1	1.6	1	0	0	1	1	1	0	Zinc	ribbon	domain
MAD	PF05557.13	gi|345005205|ref|YP_004808058.1|	-	0.079	11.3	2.5	0.15	10.4	2.4	1.4	1	1	0	1	1	1	0	Mitotic	checkpoint	protein
Spc7	PF08317.11	gi|345005205|ref|YP_004808058.1|	-	0.083	11.8	5.3	0.58	9.0	3.2	2.0	1	1	1	2	2	2	0	Spc7	kinetochore	protein
DUF885	PF05960.11	gi|345005205|ref|YP_004808058.1|	-	0.084	12.5	4.3	0.1	12.2	4.3	1.1	1	0	0	1	1	1	0	Bacterial	protein	of	unknown	function	(DUF885)
zinc-ribbons_6	PF07191.12	gi|345005205|ref|YP_004808058.1|	-	0.088	12.8	0.1	0.15	12.1	0.1	1.3	1	0	0	1	1	1	0	zinc-ribbons
Phage_GPO	PF05929.11	gi|345005205|ref|YP_004808058.1|	-	0.1	12.2	1.2	0.18	11.4	0.6	1.5	1	1	0	1	1	1	0	Phage	capsid	scaffolding	protein	(GPO)	serine	peptidase
CLZ	PF16526.5	gi|345005205|ref|YP_004808058.1|	-	0.11	12.8	4.0	6.5	7.2	0.0	3.0	2	1	1	3	3	3	0	C-terminal	leucine	zipper	domain	of	cyclic	nucleotide-gated	channels
DUF2205	PF10224.9	gi|345005205|ref|YP_004808058.1|	-	0.12	12.3	3.6	8.9	6.4	0.0	3.1	2	1	1	3	3	3	0	Short	coiled-coil	protein
AAA_13	PF13166.6	gi|345005205|ref|YP_004808058.1|	-	0.13	10.9	1.5	0.17	10.5	1.5	1.1	1	0	0	1	1	1	0	AAA	domain
ABC_tran_CTD	PF16326.5	gi|345005205|ref|YP_004808058.1|	-	0.14	12.5	5.5	0.35	11.1	0.0	3.2	3	0	0	3	3	3	0	ABC	transporter	C-terminal	domain
DUF16	PF01519.16	gi|345005205|ref|YP_004808058.1|	-	0.14	12.6	1.1	9.7	6.7	0.0	2.4	2	1	0	3	3	2	0	Protein	of	unknown	function	DUF16
LPP	PF04728.13	gi|345005205|ref|YP_004808058.1|	-	0.16	12.4	0.8	6.6	7.2	0.0	3.1	3	1	0	3	3	3	0	Lipoprotein	leucine-zipper
PAPS_reduct	PF01507.19	gi|345005205|ref|YP_004808058.1|	-	0.17	11.9	0.0	0.34	10.9	0.0	1.4	1	0	0	1	1	1	0	Phosphoadenosine	phosphosulfate	reductase	family
DUF883	PF05957.13	gi|345005205|ref|YP_004808058.1|	-	0.18	12.4	7.8	0.34	11.5	1.7	2.7	1	1	0	2	2	2	0	Bacterial	protein	of	unknown	function	(DUF883)
FUSC	PF04632.12	gi|345005205|ref|YP_004808058.1|	-	0.21	10.1	6.8	0.03	12.9	1.5	1.8	1	1	1	2	2	2	0	Fusaric	acid	resistance	protein	family
ZapA	PF05164.13	gi|345005205|ref|YP_004808058.1|	-	0.28	11.6	3.1	4.5	7.8	0.2	3.2	2	1	0	2	2	2	0	Cell	division	protein	ZapA
BBP1_C	PF15272.6	gi|345005205|ref|YP_004808058.1|	-	0.35	10.7	1.4	0.92	9.3	1.0	1.9	1	1	1	2	2	2	0	Spindle	pole	body	component	BBP1,	C-terminal
DUF4407	PF14362.6	gi|345005205|ref|YP_004808058.1|	-	0.43	9.9	6.0	2.7	7.2	5.4	2.0	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4407)
DUF1690	PF07956.11	gi|345005205|ref|YP_004808058.1|	-	0.46	10.9	2.8	0.97	9.9	0.4	2.3	1	1	0	2	2	2	0	Protein	of	Unknown	function	(DUF1690)
DUF2730	PF10805.8	gi|345005205|ref|YP_004808058.1|	-	0.46	10.6	1.8	4.1	7.6	0.1	2.7	1	1	2	3	3	3	0	Protein	of	unknown	function	(DUF2730)
FlaC_arch	PF05377.11	gi|345005205|ref|YP_004808058.1|	-	0.56	10.6	4.8	8.3	6.9	0.1	3.4	2	2	1	3	3	3	0	Flagella	accessory	protein	C	(FlaC)
DUF1451	PF07295.11	gi|345005205|ref|YP_004808058.1|	-	0.61	10.1	9.5	5.7	7.0	1.3	2.7	1	1	1	2	2	2	0	Zinc-ribbon	containing	domain
TMV_coat	PF00721.21	gi|345005205|ref|YP_004808058.1|	-	0.62	9.9	3.0	1.3	8.8	0.9	2.0	1	1	1	2	2	2	0	Virus	coat	protein	(TMV	like)
CorA	PF01544.18	gi|345005205|ref|YP_004808058.1|	-	1.2	8.4	6.2	7.6	5.7	3.2	2.3	1	1	1	2	2	2	0	CorA-like	Mg2+	transporter	protein
ATG16	PF08614.11	gi|345005205|ref|YP_004808058.1|	-	3.4	7.8	9.3	18	5.5	9.2	2.1	1	1	0	1	1	1	0	Autophagy	protein	16	(ATG16)
ATPase	PF06745.13	gi|345005206|ref|YP_004808059.1|	-	0.00013	21.4	0.0	0.11	11.8	0.0	2.4	2	1	0	2	2	2	2	KaiC
GHMP_kinases_N	PF00288.26	gi|345005207|ref|YP_004808060.1|	-	4.7e-06	26.7	0.9	1.5e-05	25.1	0.9	1.9	1	0	0	1	1	1	1	GHMP	kinases	N	terminal	domain
GHMP_kinases_C	PF08544.13	gi|345005207|ref|YP_004808060.1|	-	0.026	14.9	0.4	0.054	13.9	0.4	1.6	1	0	0	1	1	1	0	GHMP	kinases	C	terminal
BLOC1_2	PF10046.9	gi|345005208|ref|YP_004808061.1|	-	0.031	14.6	0.6	0.17	12.2	0.1	1.9	2	0	0	2	2	2	0	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
DUF4244	PF14029.6	gi|345005209|ref|YP_004808062.1|	-	0.068	12.6	2.6	0.092	12.2	2.6	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF4244)
DUF5591	PF17884.1	gi|345005210|ref|YP_004808063.1|	-	1.1e-55	187.8	0.0	1.6e-55	187.2	0.0	1.3	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF5591)
TGT_C2	PF14810.6	gi|345005210|ref|YP_004808063.1|	-	2.1e-22	79.0	0.0	5.1e-22	77.8	0.0	1.7	1	0	0	1	1	1	1	Patch-forming	domain	C2	of	tRNA-guanine	transglycosylase
PUA	PF01472.20	gi|345005210|ref|YP_004808063.1|	-	2.8e-11	43.2	0.2	6.3e-11	42.1	0.2	1.5	1	0	0	1	1	1	1	PUA	domain
TGT	PF01702.18	gi|345005210|ref|YP_004808063.1|	-	4.8e-11	42.4	0.1	1.7e-10	40.6	0.0	1.9	2	1	0	2	2	2	1	Queuine	tRNA-ribosyltransferase
TGT	PF01702.18	gi|345005211|ref|YP_004808064.1|	-	3.9e-80	269.6	0.0	5.2e-80	269.2	0.0	1.1	1	0	0	1	1	1	1	Queuine	tRNA-ribosyltransferase
CPBP	PF02517.16	gi|345005212|ref|YP_004808065.1|	-	4e-14	52.7	7.6	1e-12	48.2	7.6	2.5	1	1	0	1	1	1	1	CPBP	intramembrane	metalloprotease
NUDIX	PF00293.28	gi|345005213|ref|YP_004808066.1|	-	3e-12	46.7	0.3	3.9e-12	46.3	0.3	1.2	1	0	0	1	1	1	1	NUDIX	domain
Spore_YpjB	PF09577.10	gi|345005213|ref|YP_004808066.1|	-	0.21	11.3	0.0	0.26	11.1	0.0	1.1	1	0	0	1	1	1	0	Sporulation	protein	YpjB	(SpoYpjB)
Arylsulfotran_2	PF14269.6	gi|345005214|ref|YP_004808067.1|	-	1.3e-07	31.3	0.4	4.5e-06	26.2	0.1	2.7	1	1	1	2	2	2	1	Arylsulfotransferase	(ASST)
Arylsulfotrans	PF05935.11	gi|345005214|ref|YP_004808067.1|	-	7.2e-06	25.2	0.3	6.2e-05	22.1	0.0	2.1	1	1	0	2	2	2	1	Arylsulfotransferase	(ASST)
AAA_33	PF13671.6	gi|345005215|ref|YP_004808068.1|	-	7.3e-29	100.8	0.1	8.7e-29	100.5	0.1	1.1	1	0	0	1	1	1	1	AAA	domain
AAA_18	PF13238.6	gi|345005215|ref|YP_004808068.1|	-	1.2e-10	42.1	0.1	2.3e-10	41.1	0.1	1.5	1	1	0	1	1	1	1	AAA	domain
Zeta_toxin	PF06414.12	gi|345005215|ref|YP_004808068.1|	-	1e-08	34.7	0.6	2.5e-08	33.4	0.6	1.6	1	1	0	1	1	1	1	Zeta	toxin
AAA_17	PF13207.6	gi|345005215|ref|YP_004808068.1|	-	2.2e-08	34.6	0.1	3.6e-08	33.9	0.1	1.4	1	0	0	1	1	1	1	AAA	domain
AAA_22	PF13401.6	gi|345005215|ref|YP_004808068.1|	-	1e-07	32.3	0.0	1.8e-07	31.5	0.0	1.5	1	1	0	1	1	1	1	AAA	domain
KTI12	PF08433.10	gi|345005215|ref|YP_004808068.1|	-	1.3e-07	31.4	0.0	1.5e-07	31.2	0.0	1.0	1	0	0	1	1	1	1	Chromatin	associated	protein	KTI12
AAA	PF00004.29	gi|345005215|ref|YP_004808068.1|	-	2.1e-06	28.2	0.0	6.9e-06	26.5	0.0	1.7	1	1	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
ADK	PF00406.22	gi|345005215|ref|YP_004808068.1|	-	1e-05	25.7	0.1	0.00011	22.3	0.1	2.0	1	1	0	1	1	1	1	Adenylate	kinase
AAA_16	PF13191.6	gi|345005215|ref|YP_004808068.1|	-	5.3e-05	23.7	0.6	0.00013	22.4	0.6	1.7	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_5	PF07728.14	gi|345005215|ref|YP_004808068.1|	-	0.0002	21.4	0.0	0.00057	19.9	0.0	1.8	1	1	0	1	1	1	1	AAA	domain	(dynein-related	subfamily)
RNA_helicase	PF00910.22	gi|345005215|ref|YP_004808068.1|	-	0.00057	20.2	0.0	0.0012	19.2	0.0	1.5	1	1	0	1	1	1	1	RNA	helicase
Cytidylate_kin	PF02224.18	gi|345005215|ref|YP_004808068.1|	-	0.00094	19.0	0.2	0.017	14.9	0.0	2.1	1	1	1	2	2	2	1	Cytidylate	kinase
APS_kinase	PF01583.20	gi|345005215|ref|YP_004808068.1|	-	0.0021	18.0	0.1	0.0024	17.8	0.1	1.2	1	0	0	1	1	1	1	Adenylylsulphate	kinase
AAA_11	PF13086.6	gi|345005215|ref|YP_004808068.1|	-	0.0045	16.8	0.0	0.0073	16.1	0.0	1.4	1	1	0	1	1	1	1	AAA	domain
AAA_28	PF13521.6	gi|345005215|ref|YP_004808068.1|	-	0.0046	17.2	0.2	0.0074	16.6	0.2	1.7	1	1	0	1	1	1	1	AAA	domain
CoaE	PF01121.20	gi|345005215|ref|YP_004808068.1|	-	0.007	16.1	0.1	0.51	10.0	0.0	2.1	2	0	0	2	2	2	1	Dephospho-CoA	kinase
NTPase_1	PF03266.15	gi|345005215|ref|YP_004808068.1|	-	0.0078	16.1	0.0	0.017	15.1	0.0	1.6	1	0	0	1	1	1	1	NTPase
Mg_chelatase	PF01078.21	gi|345005215|ref|YP_004808068.1|	-	0.028	13.8	0.0	0.045	13.1	0.0	1.3	1	0	0	1	1	1	0	Magnesium	chelatase,	subunit	ChlI
ATPase	PF06745.13	gi|345005215|ref|YP_004808068.1|	-	0.033	13.6	0.3	0.97	8.7	0.0	2.1	2	0	0	2	2	2	0	KaiC
AAA_7	PF12775.7	gi|345005215|ref|YP_004808068.1|	-	0.037	13.5	0.0	0.059	12.9	0.0	1.3	1	0	0	1	1	1	0	P-loop	containing	dynein	motor	region
RuvB_N	PF05496.12	gi|345005215|ref|YP_004808068.1|	-	0.044	13.5	0.0	0.17	11.6	0.0	1.9	3	0	0	3	3	3	0	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
AAA_19	PF13245.6	gi|345005215|ref|YP_004808068.1|	-	0.071	13.5	0.8	0.31	11.4	0.8	2.1	1	1	0	1	1	1	0	AAA	domain
Rad17	PF03215.15	gi|345005215|ref|YP_004808068.1|	-	0.1	12.5	0.0	0.15	12.0	0.0	1.3	1	0	0	1	1	1	0	Rad17	P-loop	domain
AAA_24	PF13479.6	gi|345005215|ref|YP_004808068.1|	-	0.13	11.9	0.0	0.16	11.6	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
DUF2075	PF09848.9	gi|345005215|ref|YP_004808068.1|	-	0.17	11.1	0.0	0.21	10.8	0.0	1.3	1	0	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2075)
DUF4868	PF16162.5	gi|345005217|ref|YP_004808070.1|	-	4e-21	75.8	0.0	5.5e-21	75.4	0.0	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4868)
Mis12	PF05859.12	gi|345005219|ref|YP_004808072.1|	-	0.024	14.7	0.8	0.11	12.5	0.1	2.2	2	0	0	2	2	2	0	Mis12	protein
CarbopepD_reg_2	PF13715.6	gi|345005219|ref|YP_004808072.1|	-	0.065	13.2	0.1	0.19	11.8	0.1	1.8	1	0	0	1	1	1	0	CarboxypepD_reg-like	domain
FeoB_Cyto	PF17910.1	gi|345005220|ref|YP_004808073.1|	-	0.34	11.5	2.5	17	6.0	0.2	2.7	2	1	0	2	2	2	0	FeoB	cytosolic	helical	domain
GPDPase_memb	PF10110.9	gi|345005222|ref|YP_004808075.1|	-	0.00015	20.7	5.7	0.00015	20.7	5.7	1.9	1	1	1	2	2	2	1	Membrane	domain	of	glycerophosphoryl	diester	phosphodiesterase
DUF975	PF06161.11	gi|345005222|ref|YP_004808075.1|	-	0.0016	18.2	8.5	0.003	17.4	7.3	1.9	1	1	1	2	2	2	1	Protein	of	unknown	function	(DUF975)
UPF0259	PF06790.11	gi|345005222|ref|YP_004808075.1|	-	0.0021	17.9	9.3	0.0028	17.5	9.3	1.3	1	0	0	1	1	1	1	Uncharacterised	protein	family	(UPF0259)
Comm	PF15957.5	gi|345005222|ref|YP_004808075.1|	-	0.069	13.5	0.3	0.25	11.7	0.2	1.9	2	0	0	2	2	2	0	Commissureless
AWPM-19	PF05512.11	gi|345005222|ref|YP_004808075.1|	-	0.62	10.3	6.6	0.053	13.7	1.6	1.9	2	0	0	2	2	2	0	AWPM-19-like	family
Choline_transpo	PF04515.12	gi|345005222|ref|YP_004808075.1|	-	0.98	8.5	10.5	0.059	12.6	0.7	2.2	1	1	1	2	2	2	0	Plasma-membrane	choline	transporter
Drf_DAD	PF06345.11	gi|345005222|ref|YP_004808075.1|	-	4.2	7.6	5.8	1.2e+02	3.1	0.0	3.6	3	0	0	3	3	3	0	DRF	Autoregulatory	Domain
Methyltrn_RNA_2	PF04013.12	gi|345005223|ref|YP_004808076.1|	-	2.1e-61	207.1	0.0	2.3e-61	207.0	0.0	1.0	1	0	0	1	1	1	1	Putative	SAM-dependent	RNA	methyltransferase
PHO4	PF01384.20	gi|345005224|ref|YP_004808077.1|	-	7.9e-46	156.6	6.5	1.4e-45	155.8	6.5	1.4	1	1	0	1	1	1	1	Phosphate	transporter	family
Plant_vir_prot	PF01307.17	gi|345005224|ref|YP_004808077.1|	-	0.093	13.0	0.2	0.48	10.7	0.0	2.3	2	0	0	2	2	2	0	Plant	viral	movement	protein
PHO4	PF01384.20	gi|345005225|ref|YP_004808078.1|	-	2e-43	148.8	30.8	2.7e-43	148.3	30.8	1.2	1	0	0	1	1	1	1	Phosphate	transporter	family
Usp	PF00582.26	gi|345005226|ref|YP_004808079.1|	-	4.9e-26	91.9	4.3	5.8e-26	91.7	4.3	1.0	1	0	0	1	1	1	1	Universal	stress	protein	family
baeRF_family10	PF18854.1	gi|345005226|ref|YP_004808079.1|	-	0.054	13.7	2.4	0.38	11.0	2.4	2.2	1	1	0	1	1	1	0	Bacterial	archaeo-eukaryotic	release	factor	family	10
ABC_tran	PF00005.27	gi|345005229|ref|YP_004808082.1|	-	3.3e-31	108.6	0.0	5.1e-31	108.0	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
oligo_HPY	PF08352.12	gi|345005229|ref|YP_004808082.1|	-	1.9e-17	63.6	0.0	4.1e-17	62.5	0.0	1.5	1	0	0	1	1	1	1	Oligopeptide/dipeptide	transporter,	C-terminal	region
AAA_21	PF13304.6	gi|345005229|ref|YP_004808082.1|	-	0.0011	18.8	0.1	0.38	10.5	0.0	2.1	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|345005229|ref|YP_004808082.1|	-	0.0019	17.7	0.0	0.0033	16.9	0.0	1.3	1	0	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_22	PF13401.6	gi|345005229|ref|YP_004808082.1|	-	0.0084	16.4	0.7	0.14	12.4	0.3	2.6	2	1	0	2	2	2	1	AAA	domain
AAA_16	PF13191.6	gi|345005229|ref|YP_004808082.1|	-	0.067	13.6	1.4	0.24	11.8	0.2	2.2	2	1	0	2	2	2	0	AAA	ATPase	domain
AAA_29	PF13555.6	gi|345005229|ref|YP_004808082.1|	-	0.073	12.8	0.1	0.13	12.0	0.1	1.3	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
Sigma54_activat	PF00158.26	gi|345005229|ref|YP_004808082.1|	-	0.086	12.5	0.0	3.8	7.2	0.0	2.4	2	0	0	2	2	2	0	Sigma-54	interaction	domain
AAA	PF00004.29	gi|345005229|ref|YP_004808082.1|	-	0.09	13.2	0.0	0.28	11.6	0.0	1.9	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
ABC_tran	PF00005.27	gi|345005230|ref|YP_004808083.1|	-	8.2e-27	94.4	0.0	1.1e-26	93.9	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
oligo_HPY	PF08352.12	gi|345005230|ref|YP_004808083.1|	-	1.5e-19	70.2	0.1	2.7e-19	69.4	0.1	1.5	1	0	0	1	1	1	1	Oligopeptide/dipeptide	transporter,	C-terminal	region
SMC_N	PF02463.19	gi|345005230|ref|YP_004808083.1|	-	0.00021	20.8	0.0	0.00033	20.2	0.0	1.3	1	0	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_21	PF13304.6	gi|345005230|ref|YP_004808083.1|	-	0.00034	20.5	0.8	0.0007	19.5	0.1	1.9	1	1	1	2	2	2	1	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
DUF2075	PF09848.9	gi|345005230|ref|YP_004808083.1|	-	0.053	12.8	0.0	0.077	12.2	0.0	1.1	1	0	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2075)
AAA_22	PF13401.6	gi|345005230|ref|YP_004808083.1|	-	0.058	13.7	0.8	0.96	9.7	0.8	2.2	1	1	0	1	1	1	0	AAA	domain
BPD_transp_1	PF00528.22	gi|345005231|ref|YP_004808084.1|	-	1e-35	123.2	12.1	1e-35	123.2	12.1	1.9	2	0	0	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
OppC_N	PF12911.7	gi|345005231|ref|YP_004808084.1|	-	2.4e-11	43.4	0.7	2.4e-11	43.4	0.7	3.8	4	1	0	4	4	4	1	N-terminal	TM	domain	of	oligopeptide	transport	permease	C
BPD_transp_1	PF00528.22	gi|345005232|ref|YP_004808085.1|	-	2e-44	151.5	13.3	2e-44	151.5	13.3	2.0	2	0	0	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
SBP_bac_5	PF00496.22	gi|345005233|ref|YP_004808086.1|	-	1.5e-74	251.2	3.5	1.9e-74	250.9	3.5	1.1	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	proteins,	family	5	Middle
G_glu_transpept	PF01019.21	gi|345005234|ref|YP_004808087.1|	-	6.5e-140	467.3	0.1	7.4e-140	467.1	0.1	1.0	1	0	0	1	1	1	1	Gamma-glutamyltranspeptidase
DUF1028	PF06267.12	gi|345005235|ref|YP_004808088.1|	-	1.9e-32	112.6	0.0	2.6e-32	112.2	0.0	1.1	1	0	0	1	1	1	1	Family	of	unknown	function	(DUF1028)
Orthopox_A5L	PF06193.11	gi|345005235|ref|YP_004808088.1|	-	0.039	13.4	2.1	0.8	9.1	2.1	2.0	2	0	0	2	2	2	0	Orthopoxvirus	A5L	protein-like
Abhydrolase_1	PF00561.20	gi|345005236|ref|YP_004808089.1|	-	1.3e-19	70.8	0.0	1.1e-17	64.6	0.0	2.1	1	1	0	1	1	1	1	alpha/beta	hydrolase	fold
Abhydrolase_6	PF12697.7	gi|345005236|ref|YP_004808089.1|	-	8e-18	65.8	2.5	1e-17	65.5	2.5	1.1	1	0	0	1	1	1	1	Alpha/beta	hydrolase	family
Hydrolase_4	PF12146.8	gi|345005236|ref|YP_004808089.1|	-	1e-13	51.1	0.1	1.8e-10	40.5	0.0	2.1	2	0	0	2	2	2	2	Serine	aminopeptidase,	S33
ABC_tran	PF00005.27	gi|345005237|ref|YP_004808090.1|	-	1.4e-32	113.0	0.0	2.6e-32	112.2	0.0	1.4	1	0	0	1	1	1	1	ABC	transporter
oligo_HPY	PF08352.12	gi|345005237|ref|YP_004808090.1|	-	4.7e-19	68.7	0.1	1.1e-18	67.5	0.1	1.7	1	0	0	1	1	1	1	Oligopeptide/dipeptide	transporter,	C-terminal	region
AAA_21	PF13304.6	gi|345005237|ref|YP_004808090.1|	-	2.3e-07	30.9	0.7	0.00013	21.9	0.3	2.2	1	1	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_22	PF13401.6	gi|345005237|ref|YP_004808090.1|	-	0.00022	21.5	1.4	0.0033	17.7	1.4	2.2	1	1	0	1	1	1	1	AAA	domain
AAA_25	PF13481.6	gi|345005237|ref|YP_004808090.1|	-	0.00046	19.8	0.6	0.65	9.5	0.0	3.1	3	0	0	3	3	3	2	AAA	domain
SMC_N	PF02463.19	gi|345005237|ref|YP_004808090.1|	-	0.0007	19.1	0.3	0.0033	16.9	0.3	1.8	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_16	PF13191.6	gi|345005237|ref|YP_004808090.1|	-	0.0011	19.4	0.8	0.0051	17.2	0.1	2.2	2	1	0	2	2	2	1	AAA	ATPase	domain
TniB	PF05621.11	gi|345005237|ref|YP_004808090.1|	-	0.0046	16.4	0.2	0.22	10.9	0.1	2.3	2	0	0	2	2	2	1	Bacterial	TniB	protein
AAA_29	PF13555.6	gi|345005237|ref|YP_004808090.1|	-	0.016	15.0	0.1	0.029	14.1	0.1	1.4	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
NB-ARC	PF00931.22	gi|345005237|ref|YP_004808090.1|	-	0.017	14.3	0.1	0.12	11.5	0.0	2.0	2	0	0	2	2	2	0	NB-ARC	domain
RsgA_GTPase	PF03193.16	gi|345005237|ref|YP_004808090.1|	-	0.025	14.5	0.0	0.057	13.3	0.0	1.6	1	0	0	1	1	1	0	RsgA	GTPase
AAA_33	PF13671.6	gi|345005237|ref|YP_004808090.1|	-	0.029	14.5	0.5	0.58	10.3	0.0	2.5	2	2	0	2	2	2	0	AAA	domain
Zeta_toxin	PF06414.12	gi|345005237|ref|YP_004808090.1|	-	0.071	12.4	0.0	0.14	11.4	0.0	1.4	1	0	0	1	1	1	0	Zeta	toxin
ATP-synt_ab	PF00006.25	gi|345005237|ref|YP_004808090.1|	-	0.11	12.1	0.0	0.11	12.1	0.0	1.2	1	0	0	1	1	1	0	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
Septin	PF00735.18	gi|345005237|ref|YP_004808090.1|	-	0.17	11.1	0.0	0.27	10.5	0.0	1.2	1	0	0	1	1	1	0	Septin
ABC_tran	PF00005.27	gi|345005238|ref|YP_004808091.1|	-	1.5e-30	106.5	0.0	2.1e-30	106.0	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
oligo_HPY	PF08352.12	gi|345005238|ref|YP_004808091.1|	-	2.3e-20	72.9	0.1	5.4e-20	71.7	0.1	1.7	1	0	0	1	1	1	1	Oligopeptide/dipeptide	transporter,	C-terminal	region
AAA_21	PF13304.6	gi|345005238|ref|YP_004808091.1|	-	1.3e-06	28.5	0.4	4.3e-05	23.5	0.1	2.2	2	0	0	2	2	2	1	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_16	PF13191.6	gi|345005238|ref|YP_004808091.1|	-	0.0039	17.6	0.2	0.0068	16.8	0.1	1.7	1	1	0	1	1	1	1	AAA	ATPase	domain
NB-ARC	PF00931.22	gi|345005238|ref|YP_004808091.1|	-	0.0059	15.8	0.9	0.011	15.0	0.2	1.7	2	0	0	2	2	2	1	NB-ARC	domain
AAA_22	PF13401.6	gi|345005238|ref|YP_004808091.1|	-	0.0059	16.9	1.2	0.16	12.2	1.2	2.3	1	1	0	1	1	1	1	AAA	domain
SMC_N	PF02463.19	gi|345005238|ref|YP_004808091.1|	-	0.013	14.9	0.0	0.029	13.8	0.0	1.5	1	1	0	1	1	1	0	RecF/RecN/SMC	N	terminal	domain
AAA_29	PF13555.6	gi|345005238|ref|YP_004808091.1|	-	0.022	14.5	0.1	0.041	13.6	0.1	1.3	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
AAA_7	PF12775.7	gi|345005238|ref|YP_004808091.1|	-	0.038	13.5	0.0	0.076	12.5	0.0	1.4	1	0	0	1	1	1	0	P-loop	containing	dynein	motor	region
NACHT	PF05729.12	gi|345005238|ref|YP_004808091.1|	-	0.04	13.8	0.0	0.081	12.8	0.0	1.5	1	0	0	1	1	1	0	NACHT	domain
AAA_5	PF07728.14	gi|345005238|ref|YP_004808091.1|	-	0.073	13.1	0.0	0.15	12.1	0.0	1.5	1	0	0	1	1	1	0	AAA	domain	(dynein-related	subfamily)
Mg_chelatase	PF01078.21	gi|345005238|ref|YP_004808091.1|	-	0.12	11.7	0.0	0.2	11.0	0.0	1.4	1	0	0	1	1	1	0	Magnesium	chelatase,	subunit	ChlI
Sigma54_activat	PF00158.26	gi|345005238|ref|YP_004808091.1|	-	0.15	11.8	0.1	0.29	10.8	0.1	1.5	1	0	0	1	1	1	0	Sigma-54	interaction	domain
BPD_transp_1	PF00528.22	gi|345005239|ref|YP_004808092.1|	-	2.9e-23	82.6	14.9	5.3e-23	81.7	11.8	2.1	2	0	0	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
OppC_N	PF12911.7	gi|345005239|ref|YP_004808092.1|	-	9.5e-09	35.1	0.0	9.5e-09	35.1	0.0	3.0	3	0	0	3	3	3	1	N-terminal	TM	domain	of	oligopeptide	transport	permease	C
DUF4731	PF15875.5	gi|345005239|ref|YP_004808092.1|	-	0.042	14.0	0.0	11	6.3	0.0	2.6	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4731)
BPD_transp_1	PF00528.22	gi|345005240|ref|YP_004808093.1|	-	2.4e-34	118.7	17.7	4e-34	118.0	17.7	1.4	1	0	0	1	1	1	1	Binding-protein-dependent	transport	system	inner	membrane	component
FtsX	PF02687.21	gi|345005240|ref|YP_004808093.1|	-	0.16	12.4	0.1	0.16	12.4	0.1	3.2	3	1	1	4	4	4	0	FtsX-like	permease	family
SBP_bac_5	PF00496.22	gi|345005241|ref|YP_004808094.1|	-	1.7e-79	267.5	5.2	2.1e-79	267.2	3.9	1.7	2	0	0	2	2	2	1	Bacterial	extracellular	solute-binding	proteins,	family	5	Middle
SHIRT	PF18655.1	gi|345005241|ref|YP_004808094.1|	-	0.2	12.3	1.2	19	5.9	0.0	3.5	3	0	0	3	3	3	0	SHIRT	domain
Peptidase_M24	PF00557.24	gi|345005242|ref|YP_004808095.1|	-	1.4e-36	126.2	0.5	2.2e-36	125.5	0.5	1.3	1	0	0	1	1	1	1	Metallopeptidase	family	M24
Metallophos	PF00149.28	gi|345005242|ref|YP_004808095.1|	-	0.062	13.8	0.2	5.2	7.5	0.0	2.3	2	0	0	2	2	2	0	Calcineurin-like	phosphoesterase
Peptidase_M28	PF04389.17	gi|345005243|ref|YP_004808096.1|	-	3e-26	92.4	0.9	3e-26	92.4	0.9	1.5	2	0	0	2	2	2	1	Peptidase	family	M28
PA	PF02225.22	gi|345005243|ref|YP_004808096.1|	-	1.9e-12	47.0	0.7	4.4e-12	45.9	0.1	1.9	2	0	0	2	2	2	1	PA	domain
DUF4910	PF16254.5	gi|345005243|ref|YP_004808096.1|	-	0.17	10.8	0.0	0.35	9.7	0.0	1.5	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4910)
Peptidase_C15	PF01470.17	gi|345005244|ref|YP_004808097.1|	-	5.1e-58	196.6	0.0	6.2e-58	196.3	0.0	1.0	1	0	0	1	1	1	1	Pyroglutamyl	peptidase
MS_channel	PF00924.18	gi|345005245|ref|YP_004808098.1|	-	3.3e-34	118.3	0.2	4.2e-34	117.9	0.2	1.1	1	0	0	1	1	1	1	Mechanosensitive	ion	channel
TctB	PF07331.11	gi|345005245|ref|YP_004808098.1|	-	0.017	15.4	8.7	0.025	14.9	8.7	1.2	1	0	0	1	1	1	0	Tripartite	tricarboxylate	transporter	TctB	family
FA_desaturase	PF00487.24	gi|345005245|ref|YP_004808098.1|	-	0.11	12.4	3.9	0.15	11.9	3.9	1.1	1	0	0	1	1	1	0	Fatty	acid	desaturase
ABC_export	PF16962.5	gi|345005245|ref|YP_004808098.1|	-	0.16	10.4	7.9	0.19	10.1	7.9	1.1	1	0	0	1	1	1	0	Putative	ABC	exporter
DUF2171	PF09939.9	gi|345005247|ref|YP_004808100.1|	-	0.00021	21.5	1.0	0.00044	20.5	1.0	1.5	1	1	0	1	1	1	1	Uncharacterized	protein	conserved	in	bacteria	(DUF2171)
DUF2207	PF09972.9	gi|345005249|ref|YP_004808102.1|	-	0.35	9.6	5.1	0.62	8.8	0.1	2.1	2	0	0	2	2	2	0	Predicted	membrane	protein	(DUF2207)
HTH_10	PF04967.12	gi|345005250|ref|YP_004808103.1|	-	5.1e-13	48.6	0.0	1.3e-12	47.3	0.0	1.7	1	0	0	1	1	1	1	HTH	DNA	binding	domain
BAT	PF15915.5	gi|345005250|ref|YP_004808103.1|	-	6e-07	29.5	0.7	1.1e-06	28.6	0.6	1.6	1	1	0	1	1	1	1	GAF	and	HTH_10	associated	domain
MarR_2	PF12802.7	gi|345005250|ref|YP_004808103.1|	-	0.00064	19.6	2.1	0.0015	18.4	0.0	2.7	3	0	0	3	3	3	1	MarR	family
HTH_24	PF13412.6	gi|345005250|ref|YP_004808103.1|	-	0.00068	19.2	0.0	0.0012	18.3	0.0	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_3	PF01381.22	gi|345005250|ref|YP_004808103.1|	-	0.0012	18.9	0.0	0.0044	17.0	0.0	2.0	2	0	0	2	2	2	1	Helix-turn-helix
Phage_CI_repr	PF07022.13	gi|345005250|ref|YP_004808103.1|	-	0.0014	18.6	0.0	0.0076	16.3	0.0	2.1	2	1	0	2	2	2	1	Bacteriophage	CI	repressor	helix-turn-helix	domain
HTH_20	PF12840.7	gi|345005250|ref|YP_004808103.1|	-	0.0073	16.4	0.0	0.021	14.9	0.0	1.8	1	0	0	1	1	1	1	Helix-turn-helix	domain
Sigma70_r4	PF04545.16	gi|345005250|ref|YP_004808103.1|	-	0.0086	15.6	0.1	0.017	14.6	0.1	1.5	1	0	0	1	1	1	1	Sigma-70,	region	4
HTH_AsnC-type	PF13404.6	gi|345005250|ref|YP_004808103.1|	-	0.015	15.1	1.6	0.023	14.5	0.1	2.1	2	0	0	2	2	2	0	AsnC-type	helix-turn-helix	domain
HTH_Crp_2	PF13545.6	gi|345005250|ref|YP_004808103.1|	-	0.029	14.4	0.1	0.067	13.2	0.1	1.6	1	0	0	1	1	1	0	Crp-like	helix-turn-helix	domain
AbiEi_4	PF13338.6	gi|345005250|ref|YP_004808103.1|	-	0.11	12.7	0.1	0.23	11.6	0.1	1.5	1	0	0	1	1	1	0	Transcriptional	regulator,	AbiEi	antitoxin
HTH_50	PF18024.1	gi|345005250|ref|YP_004808103.1|	-	0.12	12.0	0.0	0.25	11.0	0.0	1.6	1	0	0	1	1	1	0	Helix-turn-helix	domain
TetR_N	PF00440.23	gi|345005250|ref|YP_004808103.1|	-	0.14	12.0	0.0	0.33	10.8	0.0	1.7	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	tetR	family
MFS_1	PF07690.16	gi|345005252|ref|YP_004808105.1|	-	2.3e-52	178.1	73.1	1.5e-40	139.3	42.3	2.0	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
UNC-93	PF05978.16	gi|345005252|ref|YP_004808105.1|	-	0.11	12.2	0.1	0.11	12.2	0.1	2.6	2	1	0	2	2	2	0	Ion	channel	regulatory	protein	UNC-93
Amidohydro_1	PF01979.20	gi|345005253|ref|YP_004808106.1|	-	8.7e-18	64.7	0.6	1.7e-16	60.5	0.6	2.3	1	1	0	1	1	1	1	Amidohydrolase	family
Amidohydro_3	PF07969.11	gi|345005253|ref|YP_004808106.1|	-	3.7e-16	59.7	10.3	5.4e-11	42.6	2.3	2.5	2	1	0	2	2	2	2	Amidohydrolase	family
THUMP	PF02926.17	gi|345005255|ref|YP_004808108.1|	-	1.2e-07	31.9	0.0	2.1e-07	31.1	0.0	1.4	1	0	0	1	1	1	1	THUMP	domain
DnaJ_CXXCXGXG	PF00684.19	gi|345005255|ref|YP_004808108.1|	-	0.0026	18.1	0.2	0.0026	18.1	0.2	2.5	3	0	0	3	3	3	1	DnaJ	central	domain
Anti-TRAP	PF15777.5	gi|345005255|ref|YP_004808108.1|	-	0.0053	16.7	1.9	0.0053	16.7	1.9	2.5	3	0	0	3	3	3	1	Tryptophan	RNA-binding	attenuator	protein	inhibitory	protein
RNase_HII	PF01351.18	gi|345005256|ref|YP_004808109.1|	-	1.8e-39	135.6	0.0	2.1e-39	135.4	0.0	1.0	1	0	0	1	1	1	1	Ribonuclease	HII
Lipase_GDSL_2	PF13472.6	gi|345005256|ref|YP_004808109.1|	-	0.011	16.1	0.2	0.016	15.7	0.2	1.3	1	0	0	1	1	1	0	GDSL-like	Lipase/Acylhydrolase	family
NUDIX	PF00293.28	gi|345005257|ref|YP_004808110.1|	-	3.2e-18	66.0	0.1	4.2e-18	65.7	0.1	1.1	1	0	0	1	1	1	1	NUDIX	domain
Nudix_N_2	PF14803.6	gi|345005257|ref|YP_004808110.1|	-	0.00038	20.3	6.5	0.00079	19.3	6.5	1.5	1	0	0	1	1	1	1	Nudix	N-terminal
DZR	PF12773.7	gi|345005257|ref|YP_004808110.1|	-	0.0077	16.2	0.6	0.013	15.5	0.6	1.3	1	0	0	1	1	1	1	Double	zinc	ribbon
ADK_lid	PF05191.14	gi|345005257|ref|YP_004808110.1|	-	0.12	12.4	2.9	2.4	8.2	0.1	2.8	3	0	0	3	3	3	0	Adenylate	kinase,	active	site	lid
zf-CRD	PF17979.1	gi|345005257|ref|YP_004808110.1|	-	0.16	12.1	0.6	0.24	11.5	0.6	1.1	1	0	0	1	1	1	0	Cysteine	rich	domain	with	multizinc	binding	regions
zf-TFIIB	PF13453.6	gi|345005257|ref|YP_004808110.1|	-	0.24	10.8	1.7	0.53	9.7	1.7	1.5	1	0	0	1	1	1	0	Transcription	factor	zinc-finger
DNA_binding_1	PF01035.20	gi|345005258|ref|YP_004808111.1|	-	8.6e-23	80.3	0.0	1.7e-22	79.3	0.0	1.4	2	0	0	2	2	2	1	6-O-methylguanine	DNA	methyltransferase,	DNA	binding	domain
BCHF	PF07284.11	gi|345005259|ref|YP_004808112.1|	-	0.027	14.5	0.0	0.032	14.3	0.0	1.2	1	0	0	1	1	1	0	2-vinyl	bacteriochlorophyllide	hydratase	(BCHF)
Adeno_E3	PF06040.11	gi|345005259|ref|YP_004808112.1|	-	0.14	12.3	0.3	0.28	11.4	0.0	1.7	1	1	1	2	2	2	0	Adenovirus	E3	protein
SecD_SecF	PF02355.16	gi|345005260|ref|YP_004808113.1|	-	8.2e-13	48.2	7.3	1.8e-12	47.0	7.3	1.4	1	0	0	1	1	1	1	Protein	export	membrane	protein
Sterol-sensing	PF12349.8	gi|345005260|ref|YP_004808113.1|	-	0.0021	17.9	1.5	0.0041	17.0	1.5	1.4	1	0	0	1	1	1	1	Sterol-sensing	domain	of	SREBP	cleavage-activation
DUF1824	PF08854.10	gi|345005260|ref|YP_004808113.1|	-	0.15	12.0	0.2	0.27	11.1	0.2	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1824)
MMPL	PF03176.15	gi|345005260|ref|YP_004808113.1|	-	1.8	7.4	19.7	0.58	9.0	15.5	2.1	2	0	0	2	2	2	0	MMPL	family
SecD_SecF	PF02355.16	gi|345005261|ref|YP_004808114.1|	-	6.7e-27	94.1	12.7	6.7e-27	94.1	12.7	1.4	2	0	0	2	2	2	1	Protein	export	membrane	protein
TusA	PF01206.17	gi|345005261|ref|YP_004808114.1|	-	0.029	14.2	0.0	0.051	13.4	0.0	1.4	1	0	0	1	1	1	0	Sulfurtransferase	TusA
TrkA_N	PF02254.18	gi|345005261|ref|YP_004808114.1|	-	0.03	14.6	0.0	0.055	13.7	0.0	1.4	1	0	0	1	1	1	0	TrkA-N	domain
Patched	PF02460.18	gi|345005261|ref|YP_004808114.1|	-	1.8	6.6	14.9	3.4	5.6	15.0	1.4	1	1	0	1	1	1	0	Patched	family
eIF-1a	PF01176.19	gi|345005262|ref|YP_004808115.1|	-	2e-22	78.8	0.3	2.4e-22	78.5	0.3	1.1	1	0	0	1	1	1	1	Translation	initiation	factor	1A	/	IF-1
E1-E2_ATPase	PF00122.20	gi|345005263|ref|YP_004808116.1|	-	0.00022	20.8	0.2	0.00027	20.5	0.2	1.1	1	0	0	1	1	1	1	E1-E2	ATPase
DAO	PF01266.24	gi|345005264|ref|YP_004808117.1|	-	8.3e-24	84.8	0.0	1.2e-23	84.3	0.0	1.2	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
Mqo	PF06039.15	gi|345005264|ref|YP_004808117.1|	-	3.2e-21	75.5	0.0	5.1e-20	71.5	0.0	2.0	1	1	0	1	1	1	1	Malate:quinone	oxidoreductase	(Mqo)
Pyr_redox_3	PF13738.6	gi|345005264|ref|YP_004808117.1|	-	0.00025	20.4	0.6	0.0041	16.4	0.1	2.1	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_binding_9	PF13454.6	gi|345005264|ref|YP_004808117.1|	-	0.0012	18.9	1.0	0.72	9.8	0.5	2.4	2	0	0	2	2	2	2	FAD-NAD(P)-binding
NAD_binding_8	PF13450.6	gi|345005264|ref|YP_004808117.1|	-	0.0014	18.9	0.0	0.011	15.9	0.0	2.3	2	0	0	2	2	2	1	NAD(P)-binding	Rossmann-like	domain
Pyr_redox_2	PF07992.14	gi|345005264|ref|YP_004808117.1|	-	0.0018	17.6	0.1	0.38	9.9	0.0	2.2	2	0	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
Thi4	PF01946.17	gi|345005264|ref|YP_004808117.1|	-	0.045	13.0	0.8	3	7.0	0.0	2.5	2	1	0	2	2	2	0	Thi4	family
FAD_binding_2	PF00890.24	gi|345005264|ref|YP_004808117.1|	-	0.046	12.8	0.3	0.062	12.4	0.3	1.1	1	0	0	1	1	1	0	FAD	binding	domain
HI0933_like	PF03486.14	gi|345005264|ref|YP_004808117.1|	-	0.059	12.1	0.2	0.71	8.5	0.0	2.1	2	0	0	2	2	2	0	HI0933-like	protein
DUF5093	PF17011.5	gi|345005264|ref|YP_004808117.1|	-	0.15	12.4	0.0	0.28	11.5	0.0	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF5093)
Peptidase_S8	PF00082.22	gi|345005265|ref|YP_004808118.1|	-	5.3e-39	134.3	3.2	7.3e-39	133.8	3.2	1.2	1	0	0	1	1	1	1	Subtilase	family
TAT_signal	PF10518.9	gi|345005265|ref|YP_004808118.1|	-	0.03	14.2	2.3	0.03	14.2	2.3	2.5	2	0	0	2	2	2	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
PHO4	PF01384.20	gi|345005266|ref|YP_004808119.1|	-	7e-37	127.2	36.3	7e-37	127.2	36.3	1.9	2	1	0	2	2	2	1	Phosphate	transporter	family
DUF2304	PF10066.9	gi|345005266|ref|YP_004808119.1|	-	0.001	19.2	0.8	0.001	19.2	0.8	4.2	4	2	1	5	5	5	2	Uncharacterized	conserved	protein	(DUF2304)
SpoVS	PF04232.12	gi|345005266|ref|YP_004808119.1|	-	0.13	12.0	4.1	0.83	9.4	0.7	3.0	2	2	0	2	2	2	0	Stage	V	sporulation	protein	S	(SpoVS)
Virul_fac_BrkB	PF03631.15	gi|345005267|ref|YP_004808120.1|	-	2.2e-48	165.2	22.2	2.7e-48	164.9	22.2	1.0	1	0	0	1	1	1	1	Virulence	factor	BrkB
DUF3754	PF12576.8	gi|345005267|ref|YP_004808120.1|	-	0.26	11.2	1.7	6.6	6.7	0.1	2.5	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF3754)
DUF2254	PF10011.9	gi|345005269|ref|YP_004808122.1|	-	0.23	10.3	4.6	0.56	9.0	4.6	1.6	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2254)
MarR_2	PF12802.7	gi|345005271|ref|YP_004808124.1|	-	1.6e-07	31.1	0.0	2.7e-07	30.3	0.0	1.3	1	0	0	1	1	1	1	MarR	family
HTH_IclR	PF09339.10	gi|345005271|ref|YP_004808124.1|	-	1.7e-07	30.9	0.0	3.1e-07	30.1	0.0	1.4	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
HTH_Crp_2	PF13545.6	gi|345005271|ref|YP_004808124.1|	-	3.1e-07	30.2	0.0	4.8e-07	29.7	0.0	1.2	1	0	0	1	1	1	1	Crp-like	helix-turn-helix	domain
HTH_24	PF13412.6	gi|345005271|ref|YP_004808124.1|	-	2.2e-06	27.1	0.0	5.8e-06	25.8	0.0	1.7	1	1	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
Rrf2	PF02082.20	gi|345005271|ref|YP_004808124.1|	-	9.3e-06	25.9	0.0	1.3e-05	25.5	0.0	1.1	1	0	0	1	1	1	1	Transcriptional	regulator
Fe_dep_repress	PF01325.19	gi|345005271|ref|YP_004808124.1|	-	0.00014	22.0	0.0	0.00022	21.3	0.0	1.3	1	0	0	1	1	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_5	PF01022.20	gi|345005271|ref|YP_004808124.1|	-	0.00015	21.5	0.0	0.00025	20.8	0.0	1.3	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
TrmB	PF01978.19	gi|345005271|ref|YP_004808124.1|	-	0.00065	19.5	0.0	0.0011	18.8	0.0	1.5	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
MarR	PF01047.22	gi|345005271|ref|YP_004808124.1|	-	0.0015	18.4	0.0	0.0024	17.8	0.0	1.3	1	0	0	1	1	1	1	MarR	family
HTH_20	PF12840.7	gi|345005271|ref|YP_004808124.1|	-	0.0019	18.2	0.0	0.0027	17.7	0.0	1.2	1	0	0	1	1	1	1	Helix-turn-helix	domain
Crp	PF00325.20	gi|345005271|ref|YP_004808124.1|	-	0.0038	16.8	0.0	0.0061	16.2	0.0	1.3	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	crp	family
LexA_DNA_bind	PF01726.16	gi|345005271|ref|YP_004808124.1|	-	0.0041	16.9	0.0	0.0064	16.2	0.0	1.3	1	0	0	1	1	1	1	LexA	DNA	binding	domain
TFIIE_alpha	PF02002.17	gi|345005271|ref|YP_004808124.1|	-	0.0051	16.7	0.0	0.006	16.4	0.0	1.2	1	0	0	1	1	1	1	TFIIE	alpha	subunit
HTH_23	PF13384.6	gi|345005271|ref|YP_004808124.1|	-	0.0056	16.4	0.0	0.01	15.6	0.0	1.5	1	0	0	1	1	1	1	Homeodomain-like	domain
Sulfolobus_pRN	PF05584.11	gi|345005271|ref|YP_004808124.1|	-	0.011	15.7	0.0	0.037	14.1	0.0	1.7	1	1	1	2	2	2	0	Sulfolobus	plasmid	regulatory	protein
HTH_28	PF13518.6	gi|345005271|ref|YP_004808124.1|	-	0.012	15.8	0.0	0.018	15.1	0.0	1.3	1	0	0	1	1	1	0	Helix-turn-helix	domain
GntR	PF00392.21	gi|345005271|ref|YP_004808124.1|	-	0.013	15.1	0.0	0.022	14.4	0.0	1.3	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	gntR	family
DUF2336	PF10098.9	gi|345005271|ref|YP_004808124.1|	-	0.015	14.8	0.0	0.021	14.3	0.0	1.1	1	0	0	1	1	1	0	Uncharacterised	protein	conserved	in	bacteria	(DUF2336)
Penicillinase_R	PF03965.16	gi|345005271|ref|YP_004808124.1|	-	0.018	15.4	0.0	0.029	14.7	0.0	1.4	1	1	0	1	1	1	0	Penicillinase	repressor
HTH_27	PF13463.6	gi|345005271|ref|YP_004808124.1|	-	0.021	15.3	0.0	0.032	14.7	0.0	1.2	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
HTH_11	PF08279.12	gi|345005271|ref|YP_004808124.1|	-	0.022	14.7	0.0	0.033	14.1	0.0	1.2	1	0	0	1	1	1	0	HTH	domain
HTH_AsnC-type	PF13404.6	gi|345005271|ref|YP_004808124.1|	-	0.027	14.3	0.1	0.055	13.3	0.1	1.6	1	0	0	1	1	1	0	AsnC-type	helix-turn-helix	domain
LPD22	PF18834.1	gi|345005271|ref|YP_004808124.1|	-	0.03	14.5	0.0	0.05	13.8	0.0	1.4	1	0	0	1	1	1	0	Large	polyvalent	protein	associated	domain	22
RepL	PF05732.11	gi|345005271|ref|YP_004808124.1|	-	0.034	13.6	0.0	0.036	13.5	0.0	1.2	1	0	0	1	1	1	0	Firmicute	plasmid	replication	protein	(RepL)
DprA_WH	PF17782.1	gi|345005271|ref|YP_004808124.1|	-	0.046	13.8	0.0	0.069	13.3	0.0	1.3	1	0	0	1	1	1	0	DprA	winged	helix	domain
HTH_36	PF13730.6	gi|345005271|ref|YP_004808124.1|	-	0.083	12.9	0.0	0.15	12.0	0.0	1.5	1	0	0	1	1	1	0	Helix-turn-helix	domain
HrcA_DNA-bdg	PF03444.15	gi|345005271|ref|YP_004808124.1|	-	0.083	12.6	0.0	0.12	12.0	0.0	1.2	1	0	0	1	1	1	0	Winged	helix-turn-helix	transcription	repressor,	HrcA	DNA-binding
Terminase_5	PF06056.12	gi|345005271|ref|YP_004808124.1|	-	0.12	12.3	0.0	0.72	9.8	0.0	2.0	2	0	0	2	2	2	0	Putative	ATPase	subunit	of	terminase	(gpP-like)
Sigma70_r4_2	PF08281.12	gi|345005271|ref|YP_004808124.1|	-	0.13	12.0	0.0	0.19	11.4	0.0	1.3	1	0	0	1	1	1	0	Sigma-70,	region	4
ATPase_2	PF01637.18	gi|345005272|ref|YP_004808125.1|	-	3.2e-23	82.9	0.0	4.8e-22	79.0	0.0	2.1	1	1	0	1	1	1	1	ATPase	domain	predominantly	from	Archaea
DUF234	PF03008.14	gi|345005272|ref|YP_004808125.1|	-	2e-15	57.1	0.0	4.6e-15	55.9	0.0	1.6	1	0	0	1	1	1	1	Archaea	bacterial	proteins	of	unknown	function
AAA_22	PF13401.6	gi|345005272|ref|YP_004808125.1|	-	5.5e-05	23.5	0.0	0.00048	20.4	0.0	2.1	2	0	0	2	2	2	1	AAA	domain
AAA_16	PF13191.6	gi|345005272|ref|YP_004808125.1|	-	9.9e-05	22.8	3.7	0.0012	19.2	2.6	2.5	2	1	0	2	2	2	1	AAA	ATPase	domain
TFIIE_alpha	PF02002.17	gi|345005272|ref|YP_004808125.1|	-	0.001	18.9	0.0	0.0025	17.7	0.0	1.6	1	0	0	1	1	1	1	TFIIE	alpha	subunit
AAA_14	PF13173.6	gi|345005272|ref|YP_004808125.1|	-	0.0018	18.3	0.0	0.003	17.6	0.0	1.4	1	0	0	1	1	1	1	AAA	domain
HTH_45	PF14947.6	gi|345005272|ref|YP_004808125.1|	-	0.002	18.1	0.0	0.0046	16.9	0.0	1.6	1	0	0	1	1	1	1	Winged	helix-turn-helix
HTH_IclR	PF09339.10	gi|345005272|ref|YP_004808125.1|	-	0.058	13.2	0.0	0.2	11.5	0.0	1.9	2	0	0	2	2	2	0	IclR	helix-turn-helix	domain
HTH_27	PF13463.6	gi|345005272|ref|YP_004808125.1|	-	0.062	13.8	0.3	0.18	12.3	0.1	1.9	2	0	0	2	2	2	0	Winged	helix	DNA-binding	domain
HTH_20	PF12840.7	gi|345005273|ref|YP_004808126.1|	-	1.5e-13	50.6	0.2	2.3e-13	50.0	0.2	1.2	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_5	PF01022.20	gi|345005273|ref|YP_004808126.1|	-	5.9e-10	38.9	0.0	8.2e-10	38.4	0.0	1.2	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
MarR_2	PF12802.7	gi|345005273|ref|YP_004808126.1|	-	7.4e-09	35.4	0.0	1.1e-08	34.8	0.0	1.2	1	0	0	1	1	1	1	MarR	family
MarR	PF01047.22	gi|345005273|ref|YP_004808126.1|	-	2.7e-07	30.4	0.0	4.3e-07	29.8	0.0	1.3	1	0	0	1	1	1	1	MarR	family
TrmB	PF01978.19	gi|345005273|ref|YP_004808126.1|	-	1.6e-06	27.9	0.1	2.2e-06	27.4	0.1	1.2	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
TFIIE_alpha	PF02002.17	gi|345005273|ref|YP_004808126.1|	-	3.4e-05	23.6	0.0	4.5e-05	23.3	0.0	1.1	1	0	0	1	1	1	1	TFIIE	alpha	subunit
HTH_24	PF13412.6	gi|345005273|ref|YP_004808126.1|	-	6.2e-05	22.5	0.0	8.8e-05	22.0	0.0	1.2	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
B-block_TFIIIC	PF04182.12	gi|345005273|ref|YP_004808126.1|	-	7.6e-05	22.8	0.0	0.00011	22.3	0.0	1.3	1	0	0	1	1	1	1	B-block	binding	subunit	of	TFIIIC
HTH_27	PF13463.6	gi|345005273|ref|YP_004808126.1|	-	0.00017	22.0	0.2	0.00027	21.4	0.2	1.3	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
HTH_IclR	PF09339.10	gi|345005273|ref|YP_004808126.1|	-	0.00047	19.9	0.0	0.00074	19.3	0.0	1.3	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
PadR	PF03551.14	gi|345005273|ref|YP_004808126.1|	-	0.00089	19.2	1.8	0.013	15.4	0.2	2.1	1	1	1	2	2	2	1	Transcriptional	regulator	PadR-like	family
HTH_45	PF14947.6	gi|345005273|ref|YP_004808126.1|	-	0.0015	18.5	0.0	0.0024	17.8	0.0	1.3	1	0	0	1	1	1	1	Winged	helix-turn-helix
HTH_34	PF13601.6	gi|345005273|ref|YP_004808126.1|	-	0.0028	17.8	0.0	0.004	17.3	0.0	1.3	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
HxlR	PF01638.17	gi|345005273|ref|YP_004808126.1|	-	0.0048	16.7	0.0	0.0091	15.8	0.0	1.5	1	1	0	1	1	1	1	HxlR-like	helix-turn-helix
HTH_micro	PF17007.5	gi|345005273|ref|YP_004808126.1|	-	0.0096	14.8	0.0	0.011	14.6	0.0	1.1	1	0	0	1	1	1	1	HTH-like
RP-C	PF03428.13	gi|345005273|ref|YP_004808126.1|	-	0.053	13.2	0.0	0.08	12.6	0.0	1.2	1	0	0	1	1	1	0	Replication	protein	C	N-terminal	domain
Arch_fla_DE	PF04659.13	gi|345005274|ref|YP_004808127.1|	-	0.11	12.3	2.5	0.21	11.5	0.1	2.3	2	1	1	3	3	3	0	Archaeal	flagella	protein
TPD52	PF04201.15	gi|345005274|ref|YP_004808127.1|	-	0.18	11.4	4.7	2.4	7.8	4.7	2.4	1	1	0	1	1	1	0	Tumour	protein	D52	family
Syntaxin-6_N	PF09177.11	gi|345005274|ref|YP_004808127.1|	-	2.8	8.5	11.3	1.1e+02	3.4	9.2	2.7	1	1	1	2	2	2	0	Syntaxin	6,	N-terminal
TFIIB	PF00382.19	gi|345005276|ref|YP_004808129.1|	-	3.3e-16	59.1	5.6	6.1e-13	48.6	2.3	2.4	2	0	0	2	2	2	2	Transcription	factor	TFIIB	repeat
TF_Zn_Ribbon	PF08271.12	gi|345005276|ref|YP_004808129.1|	-	0.00027	20.4	7.5	0.00085	18.8	7.0	2.2	1	1	1	2	2	2	2	TFIIB	zinc-binding
zf-ribbon_3	PF13248.6	gi|345005276|ref|YP_004808129.1|	-	3.9	7.0	5.9	0.59	9.6	1.3	2.1	2	0	0	2	2	2	0	zinc-ribbon	domain
PLDc_2	PF13091.6	gi|345005279|ref|YP_004808132.1|	-	2e-11	43.9	0.1	5.4e-11	42.5	0.1	1.8	1	1	0	1	1	1	1	PLD-like	domain
RE_NgoFVII	PF09565.10	gi|345005279|ref|YP_004808132.1|	-	2.6e-05	23.7	0.0	7.6e-05	22.2	0.0	1.8	2	0	0	2	2	2	1	NgoFVII	restriction	endonuclease
PLDc	PF00614.22	gi|345005279|ref|YP_004808132.1|	-	0.0091	16.1	0.0	0.021	15.0	0.0	1.6	1	0	0	1	1	1	1	Phospholipase	D	Active	site	motif
DS	PF01916.17	gi|345005280|ref|YP_004808133.1|	-	1.8e-98	329.3	0.0	2.4e-98	328.9	0.0	1.1	1	0	0	1	1	1	1	Deoxyhypusine	synthase
EamA	PF00892.20	gi|345005281|ref|YP_004808134.1|	-	0.00015	21.9	3.2	0.00019	21.6	3.2	1.1	1	0	0	1	1	1	1	EamA-like	transporter	family
NIF3	PF01784.18	gi|345005282|ref|YP_004808135.1|	-	4.4e-56	190.2	0.0	5.5e-56	189.9	0.0	1.0	1	0	0	1	1	1	1	NIF3	(NGG1p	interacting	factor	3)
AP_endonuc_2	PF01261.24	gi|345005282|ref|YP_004808135.1|	-	0.00045	19.7	0.5	0.023	14.1	0.0	2.3	2	1	0	2	2	2	2	Xylose	isomerase-like	TIM	barrel
Usp	PF00582.26	gi|345005282|ref|YP_004808135.1|	-	0.0089	16.5	0.7	3.5	8.1	0.1	2.3	2	0	0	2	2	2	2	Universal	stress	protein	family
Glyoxalase_4	PF13669.6	gi|345005282|ref|YP_004808135.1|	-	0.012	15.9	0.7	0.065	13.5	0.1	2.4	2	1	1	3	3	3	0	Glyoxalase/Bleomycin	resistance	protein/Dioxygenase	superfamily
Glyoxalase_6	PF18029.1	gi|345005282|ref|YP_004808135.1|	-	0.12	13.2	2.8	0.2	12.4	0.5	2.1	2	0	0	2	2	2	0	Glyoxalase-like	domain
Arginase	PF00491.21	gi|345005283|ref|YP_004808136.1|	-	1.2e-52	179.2	0.7	1.7e-52	178.7	0.7	1.1	1	0	0	1	1	1	1	Arginase	family
EFP_N	PF08207.12	gi|345005284|ref|YP_004808137.1|	-	0.011	15.8	0.0	0.14	12.2	0.0	2.1	2	0	0	2	2	2	0	Elongation	factor	P	(EF-P)	KOW-like	domain
eIF-5a	PF01287.20	gi|345005284|ref|YP_004808137.1|	-	0.12	12.5	0.2	0.2	11.8	0.2	1.5	1	0	0	1	1	1	0	Eukaryotic	elongation	factor	5A	hypusine,	DNA-binding	OB	fold
GCV_T	PF01571.21	gi|345005285|ref|YP_004808138.1|	-	1.2e-80	270.6	0.0	1.6e-80	270.2	0.0	1.2	1	0	0	1	1	1	1	Aminomethyltransferase	folate-binding	domain
GCV_T_C	PF08669.11	gi|345005285|ref|YP_004808138.1|	-	4.4e-21	74.6	0.1	8.3e-21	73.7	0.1	1.5	1	0	0	1	1	1	1	Glycine	cleavage	T-protein	C-terminal	barrel	domain
SoxG	PF04268.12	gi|345005285|ref|YP_004808138.1|	-	0.016	15.3	0.1	3.1	8.0	0.0	2.3	2	0	0	2	2	2	0	Sarcosine	oxidase,	gamma	subunit	family
GCV_H	PF01597.19	gi|345005286|ref|YP_004808139.1|	-	8.5e-44	148.4	0.0	9.2e-44	148.2	0.0	1.0	1	0	0	1	1	1	1	Glycine	cleavage	H-protein
Biotin_lipoyl	PF00364.22	gi|345005286|ref|YP_004808139.1|	-	0.012	15.5	0.1	0.018	14.9	0.1	1.2	1	0	0	1	1	1	0	Biotin-requiring	enzyme
RnfC_N	PF13375.6	gi|345005286|ref|YP_004808139.1|	-	0.18	11.8	0.0	0.25	11.3	0.0	1.2	1	0	0	1	1	1	0	RnfC	Barrel	sandwich	hybrid	domain
GDC-P	PF02347.16	gi|345005287|ref|YP_004808140.1|	-	2.2e-100	336.5	0.0	2.6e-100	336.3	0.0	1.0	1	0	0	1	1	1	1	Glycine	cleavage	system	P-protein
Cys_Met_Meta_PP	PF01053.20	gi|345005287|ref|YP_004808140.1|	-	8.8e-05	21.2	0.0	0.00013	20.6	0.0	1.1	1	0	0	1	1	1	1	Cys/Met	metabolism	PLP-dependent	enzyme
ATP-grasp_4	PF13535.6	gi|345005287|ref|YP_004808140.1|	-	0.14	11.8	0.0	0.28	10.7	0.0	1.5	1	0	0	1	1	1	0	ATP-grasp	domain
Aminotran_5	PF00266.19	gi|345005288|ref|YP_004808141.1|	-	9.9e-09	34.6	0.0	1.5e-08	34.0	0.0	1.2	1	0	0	1	1	1	1	Aminotransferase	class-V
GDC-P	PF02347.16	gi|345005288|ref|YP_004808141.1|	-	2.8e-07	29.7	0.0	2.5e-06	26.6	0.0	1.9	1	1	0	1	1	1	1	Glycine	cleavage	system	P-protein
Aminotran_1_2	PF00155.21	gi|345005288|ref|YP_004808141.1|	-	0.032	13.4	0.0	0.045	12.9	0.0	1.2	1	0	0	1	1	1	0	Aminotransferase	class	I	and	II
Beta_elim_lyase	PF01212.21	gi|345005288|ref|YP_004808141.1|	-	0.04	13.2	0.0	0.063	12.5	0.0	1.3	1	0	0	1	1	1	0	Beta-eliminating	lyase
DegT_DnrJ_EryC1	PF01041.17	gi|345005288|ref|YP_004808141.1|	-	0.042	13.2	0.1	0.084	12.2	0.1	1.4	1	0	0	1	1	1	0	DegT/DnrJ/EryC1/StrS	aminotransferase	family
Zn_Tnp_IS1595	PF12760.7	gi|345005290|ref|YP_004808143.1|	-	3.1e-05	23.9	1.3	3.5e-05	23.7	1.3	1.1	1	0	0	1	1	1	1	Transposase	zinc-ribbon	domain
Zn-ribbon_8	PF09723.10	gi|345005290|ref|YP_004808143.1|	-	0.0028	17.7	0.7	0.77	9.9	0.1	2.1	2	0	0	2	2	2	2	Zinc	ribbon	domain
zf-H2C2_2	PF13465.6	gi|345005290|ref|YP_004808143.1|	-	0.012	16.0	0.7	1.1	9.8	0.1	2.1	2	0	0	2	2	2	0	Zinc-finger	double	domain
zf-ZPR1	PF03367.13	gi|345005290|ref|YP_004808143.1|	-	0.026	14.4	0.1	0.027	14.3	0.1	1.1	1	0	0	1	1	1	0	ZPR1	zinc-finger	domain
Ogr_Delta	PF04606.12	gi|345005290|ref|YP_004808143.1|	-	0.033	14.2	1.3	0.057	13.4	1.3	1.4	1	1	0	1	1	1	0	Ogr/Delta-like	zinc	finger
TFIIS_C	PF01096.18	gi|345005290|ref|YP_004808143.1|	-	0.067	13.1	3.6	1.8	8.5	0.2	2.1	2	0	0	2	2	2	0	Transcription	factor	S-II	(TFIIS)
DUF2310	PF10071.9	gi|345005290|ref|YP_004808143.1|	-	0.07	12.4	1.4	0.077	12.3	1.4	1.0	1	0	0	1	1	1	0	Zn-ribbon-containing,	possibly	nucleic-acid-binding	protein	(DUF2310)
zinc_ribbon_4	PF13717.6	gi|345005290|ref|YP_004808143.1|	-	0.077	12.9	1.8	4.6	7.3	0.1	2.1	2	0	0	2	2	2	0	zinc-ribbon	domain
DUF983	PF06170.12	gi|345005290|ref|YP_004808143.1|	-	0.11	12.9	0.5	2.8	8.4	0.1	2.0	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF983)
zf_UBZ	PF18439.1	gi|345005290|ref|YP_004808143.1|	-	0.44	10.2	2.7	6.3	6.5	0.2	2.2	2	0	0	2	2	2	0	Ubiquitin-Binding	Zinc	Finger
zf-ISL3	PF14690.6	gi|345005290|ref|YP_004808143.1|	-	0.56	10.9	4.4	13	6.5	1.4	2.2	1	1	1	2	2	2	0	zinc-finger	of	transposase	IS204/IS1001/IS1096/IS1165
OrfB_Zn_ribbon	PF07282.11	gi|345005290|ref|YP_004808143.1|	-	0.82	9.6	3.5	2	8.4	3.5	1.6	1	1	0	1	1	1	0	Putative	transposase	DNA-binding	domain
CpXC	PF14353.6	gi|345005290|ref|YP_004808143.1|	-	0.87	9.6	3.2	4.5	7.3	0.3	2.0	1	1	1	2	2	2	0	CpXC	protein
Glutaredoxin	PF00462.24	gi|345005291|ref|YP_004808144.1|	-	2.9e-13	49.8	0.0	3.7e-13	49.5	0.0	1.1	1	0	0	1	1	1	1	Glutaredoxin
GST_N_3	PF13417.6	gi|345005291|ref|YP_004808144.1|	-	4.3e-13	49.5	0.0	5.1e-13	49.2	0.0	1.0	1	0	0	1	1	1	1	Glutathione	S-transferase,	N-terminal	domain
GST_N_2	PF13409.6	gi|345005291|ref|YP_004808144.1|	-	1.2e-12	47.9	0.0	1.4e-12	47.7	0.0	1.0	1	0	0	1	1	1	1	Glutathione	S-transferase,	N-terminal	domain
GST_N	PF02798.20	gi|345005291|ref|YP_004808144.1|	-	1e-06	29.0	0.0	1.2e-06	28.8	0.0	1.0	1	0	0	1	1	1	1	Glutathione	S-transferase,	N-terminal	domain
DUF836	PF05768.14	gi|345005291|ref|YP_004808144.1|	-	0.0054	17.1	0.0	0.0064	16.9	0.0	1.2	1	1	0	1	1	1	1	Glutaredoxin-like	domain	(DUF836)
Memo	PF01875.17	gi|345005291|ref|YP_004808144.1|	-	0.045	12.9	0.0	0.052	12.7	0.0	1.0	1	0	0	1	1	1	0	Memo-like	protein
Cob_adeno_trans	PF01923.18	gi|345005292|ref|YP_004808145.1|	-	4.4e-56	189.5	0.1	4.9e-56	189.4	0.1	1.0	1	0	0	1	1	1	1	Cobalamin	adenosyltransferase
ABATE	PF07336.11	gi|345005292|ref|YP_004808145.1|	-	0.26	11.9	11.1	0.77	10.4	11.1	1.8	1	1	0	1	1	1	0	Putative	stress-induced	transcription	regulator
ApoC-I	PF04691.12	gi|345005293|ref|YP_004808146.1|	-	0.0032	17.3	0.2	0.014	15.3	0.0	1.9	2	0	0	2	2	2	1	Apolipoprotein	C-I	(ApoC-1)
Apolipoprotein	PF01442.18	gi|345005293|ref|YP_004808146.1|	-	0.0047	16.8	5.5	0.006	16.5	5.5	1.3	1	0	0	1	1	1	1	Apolipoprotein	A1/A4/E	domain
HBM	PF16591.5	gi|345005293|ref|YP_004808146.1|	-	0.0075	15.7	0.3	0.012	15.1	0.3	1.4	1	1	1	2	2	2	1	Helical	bimodular	sensor	domain
Spc7	PF08317.11	gi|345005293|ref|YP_004808146.1|	-	0.015	14.2	2.3	0.017	14.0	2.3	1.1	1	0	0	1	1	1	0	Spc7	kinetochore	protein
PilJ	PF13675.6	gi|345005293|ref|YP_004808146.1|	-	0.022	14.8	0.7	0.027	14.5	0.7	1.2	1	0	0	1	1	1	0	Type	IV	pili	methyl-accepting	chemotaxis	transducer	N-term
FlaC_arch	PF05377.11	gi|345005293|ref|YP_004808146.1|	-	0.097	13.1	0.7	9.6	6.7	0.3	2.2	2	0	0	2	2	2	0	Flagella	accessory	protein	C	(FlaC)
DUF883	PF05957.13	gi|345005293|ref|YP_004808146.1|	-	0.16	12.6	5.4	0.77	10.4	1.7	2.1	1	1	0	2	2	2	0	Bacterial	protein	of	unknown	function	(DUF883)
DUF2721	PF11026.8	gi|345005293|ref|YP_004808146.1|	-	0.25	11.2	0.3	0.29	11.0	0.3	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2721)
FUSC	PF04632.12	gi|345005293|ref|YP_004808146.1|	-	0.26	9.8	1.7	0.29	9.6	1.7	1.0	1	0	0	1	1	1	0	Fusaric	acid	resistance	protein	family
CENP-Q	PF13094.6	gi|345005293|ref|YP_004808146.1|	-	0.33	11.2	6.9	0.36	11.0	6.9	1.1	1	0	0	1	1	1	0	CENP-Q,	a	CENPA-CAD	centromere	complex	subunit
HATPase_c	PF02518.26	gi|345005294|ref|YP_004808147.1|	-	7.1e-11	42.6	0.0	1.6e-10	41.5	0.0	1.6	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HisKA_4TM	PF16926.5	gi|345005294|ref|YP_004808147.1|	-	1.5e-07	31.2	3.1	1.5e-07	31.2	3.1	2.6	2	1	0	2	2	2	1	Archaeal	4TM	region	of	histidine	kinase
HATPase_c_5	PF14501.6	gi|345005294|ref|YP_004808147.1|	-	3.4e-07	30.1	0.0	5.9e-07	29.3	0.0	1.4	1	0	0	1	1	1	1	GHKL	domain
SPOB_a	PF14689.6	gi|345005294|ref|YP_004808147.1|	-	0.0031	17.2	0.4	0.0056	16.4	0.4	1.3	1	0	0	1	1	1	1	Sensor_kinase_SpoOB-type,	alpha-helical	domain
TPP1	PF10341.9	gi|345005294|ref|YP_004808147.1|	-	0.0058	16.6	0.0	0.04	13.9	0.0	2.0	2	0	0	2	2	2	1	Shelterin	complex	subunit,	TPP1/ACD
HATPase_c_2	PF13581.6	gi|345005294|ref|YP_004808147.1|	-	0.044	13.8	0.0	0.082	12.9	0.0	1.3	1	0	0	1	1	1	0	Histidine	kinase-like	ATPase	domain
tRNA_SAD	PF07973.14	gi|345005295|ref|YP_004808148.1|	-	3e-12	46.4	0.1	4.8e-12	45.8	0.1	1.3	1	0	0	1	1	1	1	Threonyl	and	Alanyl	tRNA	synthetase	second	additional	domain
tRNA-synt_2c	PF01411.19	gi|345005295|ref|YP_004808148.1|	-	6.7e-12	44.7	0.0	1e-11	44.1	0.0	1.2	1	0	0	1	1	1	1	tRNA	synthetases	class	II	(A)
DHHA1	PF02272.19	gi|345005295|ref|YP_004808148.1|	-	1.4e-11	45.0	2.2	2e-11	44.4	1.0	1.9	1	1	1	2	2	2	1	DHHA1	domain
Acyl-CoA_dh_1	PF00441.24	gi|345005296|ref|YP_004808149.1|	-	9.1e-54	181.7	2.4	1.3e-53	181.2	2.4	1.2	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	C-terminal	domain
Acyl-CoA_dh_N	PF02771.16	gi|345005296|ref|YP_004808149.1|	-	1.9e-30	105.9	0.8	4.6e-30	104.6	0.2	2.0	2	0	0	2	2	2	1	Acyl-CoA	dehydrogenase,	N-terminal	domain
Acyl-CoA_dh_2	PF08028.11	gi|345005296|ref|YP_004808149.1|	-	3.5e-26	92.0	1.4	3.5e-26	92.0	1.4	1.6	2	0	0	2	2	2	1	Acyl-CoA	dehydrogenase,	C-terminal	domain
Acyl-CoA_dh_M	PF02770.19	gi|345005296|ref|YP_004808149.1|	-	2e-25	88.8	0.0	3.7e-25	88.0	0.0	1.5	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	middle	domain
DUF2891	PF11199.8	gi|345005297|ref|YP_004808150.1|	-	1.5e-116	388.9	0.1	1.7e-116	388.7	0.1	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF2891)
HAD_2	PF13419.6	gi|345005298|ref|YP_004808151.1|	-	5.2e-19	69.0	0.0	3.1e-18	66.5	0.0	1.9	1	1	0	1	1	1	1	Haloacid	dehalogenase-like	hydrolase
Hydrolase	PF00702.26	gi|345005298|ref|YP_004808151.1|	-	4.7e-07	30.3	1.8	2.3e-06	28.0	0.3	2.0	1	1	1	2	2	2	1	haloacid	dehalogenase-like	hydrolase
Hydrolase_like	PF13242.6	gi|345005298|ref|YP_004808151.1|	-	0.0021	18.1	0.0	0.0049	16.9	0.0	1.7	1	0	0	1	1	1	1	HAD-hyrolase-like
HAD	PF12710.7	gi|345005298|ref|YP_004808151.1|	-	0.0081	16.6	2.3	0.069	13.6	2.3	2.0	1	1	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
AA_permease	PF00324.21	gi|345005299|ref|YP_004808152.1|	-	0.039	12.5	0.1	0.042	12.4	0.1	1.0	1	0	0	1	1	1	0	Amino	acid	permease
EmrE	PF13536.6	gi|345005299|ref|YP_004808152.1|	-	0.046	13.3	1.4	0.052	13.1	1.4	1.1	1	0	0	1	1	1	0	Putative	multidrug	resistance	efflux	transporter
PsbN	PF02468.15	gi|345005299|ref|YP_004808152.1|	-	0.15	11.9	4.3	0.87	9.5	0.3	2.2	2	0	0	2	2	2	0	Photosystem	II	reaction	centre	N	protein	(psbN)
Abhydrolase_6	PF12697.7	gi|345005300|ref|YP_004808153.1|	-	5.2e-21	76.3	3.9	6.1e-21	76.0	3.9	1.0	1	0	0	1	1	1	1	Alpha/beta	hydrolase	family
Abhydrolase_1	PF00561.20	gi|345005300|ref|YP_004808153.1|	-	1.2e-14	54.6	0.1	3.7e-07	30.1	0.1	2.0	1	1	1	2	2	2	2	alpha/beta	hydrolase	fold
Hydrolase_4	PF12146.8	gi|345005300|ref|YP_004808153.1|	-	1.3e-14	54.1	0.2	3.2e-14	52.8	0.2	1.6	1	1	0	1	1	1	1	Serine	aminopeptidase,	S33
Abhydrolase_4	PF08386.10	gi|345005300|ref|YP_004808153.1|	-	7.3e-05	22.8	0.0	0.00014	21.9	0.0	1.4	1	0	0	1	1	1	1	TAP-like	protein
Thioesterase	PF00975.20	gi|345005300|ref|YP_004808153.1|	-	0.00018	21.7	0.0	0.00063	19.9	0.0	1.7	2	0	0	2	2	2	1	Thioesterase	domain
Abhydrolase_5	PF12695.7	gi|345005300|ref|YP_004808153.1|	-	0.01	15.6	0.0	0.15	11.8	0.0	2.2	2	0	0	2	2	2	0	Alpha/beta	hydrolase	family
FSH1	PF03959.13	gi|345005300|ref|YP_004808153.1|	-	0.023	14.4	0.1	1.9	8.1	0.0	2.9	2	1	1	3	3	3	0	Serine	hydrolase	(FSH1)
Abhydrolase_3	PF07859.13	gi|345005300|ref|YP_004808153.1|	-	0.068	13.0	0.1	0.16	11.8	0.1	1.7	1	1	0	1	1	1	0	alpha/beta	hydrolase	fold
Esterase	PF00756.20	gi|345005300|ref|YP_004808153.1|	-	0.21	11.2	0.1	0.46	10.1	0.1	1.5	1	1	0	1	1	1	0	Putative	esterase
HSP20	PF00011.21	gi|345005301|ref|YP_004808154.1|	-	0.035	14.2	1.5	3	8.0	1.4	2.2	1	1	0	1	1	1	0	Hsp20/alpha	crystallin	family
ArsA_HSP20	PF17886.1	gi|345005301|ref|YP_004808154.1|	-	0.12	12.0	0.2	1.5	8.4	0.2	2.2	1	1	0	1	1	1	0	HSP20-like	domain	found	in	ArsA
AAA	PF00004.29	gi|345005302|ref|YP_004808155.1|	-	1.1e-98	326.8	0.0	7.8e-48	162.2	0.0	2.7	3	0	0	3	3	2	2	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_lid_3	PF17862.1	gi|345005302|ref|YP_004808155.1|	-	1.1e-30	105.2	6.1	6.4e-16	57.9	0.3	2.8	2	0	0	2	2	2	2	AAA+	lid	domain
CDC48_N	PF02359.18	gi|345005302|ref|YP_004808155.1|	-	4.9e-21	74.7	0.2	1.7e-20	72.9	0.2	2.0	1	0	0	1	1	1	1	Cell	division	protein	48	(CDC48),	N-terminal	domain
AAA_2	PF07724.14	gi|345005302|ref|YP_004808155.1|	-	3.5e-16	59.8	0.0	1.3e-06	28.7	0.0	2.7	2	0	0	2	2	2	2	AAA	domain	(Cdc48	subfamily)
RuvB_N	PF05496.12	gi|345005302|ref|YP_004808155.1|	-	6e-16	58.6	0.0	3.8e-07	30.0	0.0	2.7	3	0	0	3	3	2	2	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
AAA_16	PF13191.6	gi|345005302|ref|YP_004808155.1|	-	4.5e-15	56.5	0.2	2.5e-06	28.0	0.0	3.8	2	2	0	2	2	2	2	AAA	ATPase	domain
CDC48_2	PF02933.17	gi|345005302|ref|YP_004808155.1|	-	3e-14	52.5	0.2	6.9e-14	51.4	0.2	1.7	1	0	0	1	1	1	1	Cell	division	protein	48	(CDC48),	domain	2
AAA_5	PF07728.14	gi|345005302|ref|YP_004808155.1|	-	1.3e-10	41.4	0.6	0.00064	19.7	0.0	4.2	2	2	0	2	2	2	2	AAA	domain	(dynein-related	subfamily)
AAA_22	PF13401.6	gi|345005302|ref|YP_004808155.1|	-	1.4e-10	41.6	0.1	0.00094	19.5	0.0	3.3	2	2	0	2	2	2	2	AAA	domain
AAA_14	PF13173.6	gi|345005302|ref|YP_004808155.1|	-	4e-10	39.8	0.0	0.00089	19.3	0.0	3.1	3	0	0	3	3	3	2	AAA	domain
TIP49	PF06068.13	gi|345005302|ref|YP_004808155.1|	-	5.4e-10	39.0	0.1	0.00043	19.6	0.0	2.8	3	0	0	3	3	3	2	TIP49	P-loop	domain
AAA_33	PF13671.6	gi|345005302|ref|YP_004808155.1|	-	6e-10	39.4	0.0	0.00044	20.4	0.0	2.6	2	1	0	2	2	2	2	AAA	domain
RNA_helicase	PF00910.22	gi|345005302|ref|YP_004808155.1|	-	2.5e-08	34.2	0.0	0.01	16.2	0.0	2.5	2	0	0	2	2	2	2	RNA	helicase
IstB_IS21	PF01695.17	gi|345005302|ref|YP_004808155.1|	-	4.4e-08	33.1	0.0	0.0021	17.8	0.0	2.4	2	0	0	2	2	2	2	IstB-like	ATP	binding	protein
AAA_7	PF12775.7	gi|345005302|ref|YP_004808155.1|	-	5.2e-08	32.6	0.0	0.013	15.0	0.0	2.5	2	0	0	2	2	2	2	P-loop	containing	dynein	motor	region
AAA_18	PF13238.6	gi|345005302|ref|YP_004808155.1|	-	9.4e-08	32.7	0.0	0.0056	17.2	0.0	2.6	2	0	0	2	2	2	2	AAA	domain
AAA_28	PF13521.6	gi|345005302|ref|YP_004808155.1|	-	3e-07	30.8	0.0	0.022	15.0	0.0	3.0	3	0	0	3	3	2	2	AAA	domain
DUF815	PF05673.13	gi|345005302|ref|YP_004808155.1|	-	3.9e-07	29.5	0.0	0.0028	16.9	0.0	2.8	2	1	0	2	2	2	2	Protein	of	unknown	function	(DUF815)
Mg_chelatase	PF01078.21	gi|345005302|ref|YP_004808155.1|	-	8.4e-07	28.6	0.1	0.031	13.7	0.0	2.5	2	0	0	2	2	2	2	Magnesium	chelatase,	subunit	ChlI
TsaE	PF02367.17	gi|345005302|ref|YP_004808155.1|	-	3e-06	27.2	0.0	0.095	12.7	0.0	2.4	2	0	0	2	2	2	2	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
AAA_3	PF07726.11	gi|345005302|ref|YP_004808155.1|	-	4.8e-06	26.5	0.0	0.059	13.2	0.0	2.5	2	0	0	2	2	2	2	ATPase	family	associated	with	various	cellular	activities	(AAA)
DUF2075	PF09848.9	gi|345005302|ref|YP_004808155.1|	-	7e-06	25.5	0.0	0.041	13.1	0.0	2.6	3	0	0	3	3	2	2	Uncharacterized	conserved	protein	(DUF2075)
Sigma54_activat	PF00158.26	gi|345005302|ref|YP_004808155.1|	-	7.6e-06	25.7	0.0	0.13	12.0	0.0	2.9	2	1	0	2	2	2	2	Sigma-54	interaction	domain
AAA_30	PF13604.6	gi|345005302|ref|YP_004808155.1|	-	9.5e-06	25.5	0.0	0.16	11.7	0.0	2.6	2	0	0	2	2	2	2	AAA	domain
ABC_tran	PF00005.27	gi|345005302|ref|YP_004808155.1|	-	1.2e-05	25.9	0.0	0.11	13.0	0.0	2.6	2	0	0	2	2	2	2	ABC	transporter
AAA_11	PF13086.6	gi|345005302|ref|YP_004808155.1|	-	2.5e-05	24.2	0.1	0.18	11.6	0.0	2.5	3	0	0	3	3	2	2	AAA	domain
NB-ARC	PF00931.22	gi|345005302|ref|YP_004808155.1|	-	3.4e-05	23.2	0.0	0.47	9.6	0.0	2.9	3	0	0	3	3	3	2	NB-ARC	domain
AAA_24	PF13479.6	gi|345005302|ref|YP_004808155.1|	-	4e-05	23.4	0.0	0.063	13.0	0.0	2.5	2	0	0	2	2	2	2	AAA	domain
PhoH	PF02562.16	gi|345005302|ref|YP_004808155.1|	-	4.6e-05	23.0	0.0	0.15	11.5	0.0	2.4	2	0	0	2	2	2	2	PhoH-like	protein
Vps4_C	PF09336.10	gi|345005302|ref|YP_004808155.1|	-	5.6e-05	23.1	0.1	0.29	11.2	0.0	2.7	2	0	0	2	2	2	2	Vps4	C	terminal	oligomerisation	domain
NTPase_1	PF03266.15	gi|345005302|ref|YP_004808155.1|	-	7.2e-05	22.8	0.0	0.47	10.3	0.0	2.9	2	1	0	2	2	2	2	NTPase
AAA_25	PF13481.6	gi|345005302|ref|YP_004808155.1|	-	9.5e-05	22.1	2.7	1.3	8.5	0.1	4.2	4	0	0	4	4	4	1	AAA	domain
NACHT	PF05729.12	gi|345005302|ref|YP_004808155.1|	-	0.00014	21.8	0.1	0.7	9.8	0.0	3.2	3	0	0	3	3	3	2	NACHT	domain
ATPase	PF06745.13	gi|345005302|ref|YP_004808155.1|	-	0.00015	21.2	0.0	0.71	9.2	0.0	2.9	3	0	0	3	3	2	2	KaiC
Parvo_NS1	PF01057.17	gi|345005302|ref|YP_004808155.1|	-	0.00015	20.9	0.0	0.37	9.8	0.0	2.2	2	0	0	2	2	2	2	Parvovirus	non-structural	protein	NS1
Zeta_toxin	PF06414.12	gi|345005302|ref|YP_004808155.1|	-	0.00017	20.9	0.1	0.57	9.4	0.0	2.6	2	0	0	2	2	2	2	Zeta	toxin
AAA_19	PF13245.6	gi|345005302|ref|YP_004808155.1|	-	0.00044	20.6	0.0	1.6	9.0	0.0	2.7	2	0	0	2	2	2	2	AAA	domain
Bac_DnaA	PF00308.18	gi|345005302|ref|YP_004808155.1|	-	0.00059	19.7	0.0	0.28	11.0	0.0	2.9	3	0	0	3	3	3	1	Bacterial	dnaA	protein
ATPase_2	PF01637.18	gi|345005302|ref|YP_004808155.1|	-	0.00063	19.7	0.0	1	9.2	0.0	2.9	2	2	0	2	2	2	1	ATPase	domain	predominantly	from	Archaea
Sigma54_activ_2	PF14532.6	gi|345005302|ref|YP_004808155.1|	-	0.00072	19.7	0.0	1.4	9.1	0.0	2.8	2	0	0	2	2	2	1	Sigma-54	interaction	domain
AAA_17	PF13207.6	gi|345005302|ref|YP_004808155.1|	-	0.00079	19.9	0.0	2.6	8.5	0.0	3.0	2	0	0	2	2	2	1	AAA	domain
T2SSE	PF00437.20	gi|345005302|ref|YP_004808155.1|	-	0.0057	15.7	0.0	2.7	7.0	0.0	2.6	2	0	0	2	2	2	1	Type	II/IV	secretion	system	protein
Cytidylate_kin2	PF13189.6	gi|345005302|ref|YP_004808155.1|	-	0.0073	16.5	0.1	0.31	11.1	0.0	2.4	2	0	0	2	2	2	1	Cytidylate	kinase-like	family
ResIII	PF04851.15	gi|345005302|ref|YP_004808155.1|	-	0.0089	16.0	0.0	3	7.8	0.0	2.5	2	0	0	2	2	2	1	Type	III	restriction	enzyme,	res	subunit
AFG1_ATPase	PF03969.16	gi|345005302|ref|YP_004808155.1|	-	0.0089	15.0	0.0	2.2	7.1	0.0	2.4	2	0	0	2	2	2	1	AFG1-like	ATPase
CPT	PF07931.12	gi|345005302|ref|YP_004808155.1|	-	0.013	15.4	0.0	2.6	7.9	0.0	2.6	2	0	0	2	2	2	0	Chloramphenicol	phosphotransferase-like	protein
Cytidylate_kin	PF02224.18	gi|345005302|ref|YP_004808155.1|	-	0.02	14.6	0.1	3.9	7.2	0.0	2.5	2	0	0	2	2	2	0	Cytidylate	kinase
MCM	PF00493.23	gi|345005302|ref|YP_004808155.1|	-	0.036	13.1	0.0	5.7	6.0	0.0	2.3	2	0	0	2	2	2	0	MCM	P-loop	domain
SKI	PF01202.22	gi|345005302|ref|YP_004808155.1|	-	0.042	14.0	0.0	9.7	6.3	0.0	2.6	2	0	0	2	2	2	0	Shikimate	kinase
Guanylate_kin	PF00625.21	gi|345005302|ref|YP_004808155.1|	-	0.048	13.3	0.2	29	4.3	0.0	3.6	2	2	2	4	4	3	0	Guanylate	kinase
TniB	PF05621.11	gi|345005302|ref|YP_004808155.1|	-	0.049	13.0	0.0	14	5.0	0.0	2.9	3	0	0	3	3	3	0	Bacterial	TniB	protein
Torsin	PF06309.11	gi|345005302|ref|YP_004808155.1|	-	0.05	13.7	0.0	3.5	7.8	0.0	2.3	2	0	0	2	2	2	0	Torsin
Rad17	PF03215.15	gi|345005302|ref|YP_004808155.1|	-	0.06	13.3	0.0	15	5.4	0.0	2.3	2	0	0	2	2	2	0	Rad17	P-loop	domain
AAA_29	PF13555.6	gi|345005302|ref|YP_004808155.1|	-	0.063	13.0	0.0	9.1	6.1	0.0	2.4	2	0	0	2	2	2	0	P-loop	containing	region	of	AAA	domain
Hydin_ADK	PF17213.3	gi|345005302|ref|YP_004808155.1|	-	0.13	12.5	0.3	2.6	8.3	0.1	2.4	2	0	0	2	2	2	0	Hydin	Adenylate	kinase-like	domain
adh_short	PF00106.25	gi|345005303|ref|YP_004808156.1|	-	1.2e-22	80.4	0.0	7.5e-22	77.7	0.0	1.9	1	1	0	1	1	1	1	short	chain	dehydrogenase
adh_short_C2	PF13561.6	gi|345005303|ref|YP_004808156.1|	-	5.4e-15	55.6	0.0	9.3e-15	54.8	0.0	1.6	1	1	0	1	1	1	1	Enoyl-(Acyl	carrier	protein)	reductase
KR	PF08659.10	gi|345005303|ref|YP_004808156.1|	-	5.7e-05	23.1	0.1	0.0001	22.3	0.1	1.5	1	1	0	1	1	1	1	KR	domain
Epimerase	PF01370.21	gi|345005303|ref|YP_004808156.1|	-	0.073	12.5	0.0	0.18	11.3	0.0	1.6	1	1	0	1	1	1	0	NAD	dependent	epimerase/dehydratase	family
ATP-synt_ab	PF00006.25	gi|345005303|ref|YP_004808156.1|	-	0.086	12.5	0.0	0.15	11.7	0.0	1.3	1	0	0	1	1	1	0	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
ABC_tran	PF00005.27	gi|345005304|ref|YP_004808157.1|	-	6.7e-23	81.7	0.0	9.8e-23	81.2	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|345005304|ref|YP_004808157.1|	-	1.9e-11	44.4	0.1	9.1e-07	29.0	0.0	2.1	1	1	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_15	PF13175.6	gi|345005304|ref|YP_004808157.1|	-	0.00075	19.3	0.0	0.91	9.2	0.0	2.1	2	0	0	2	2	2	2	AAA	ATPase	domain
SMC_N	PF02463.19	gi|345005304|ref|YP_004808157.1|	-	0.0053	16.2	0.0	0.6	9.5	0.0	2.1	2	0	0	2	2	2	1	RecF/RecN/SMC	N	terminal	domain
AAA_23	PF13476.6	gi|345005304|ref|YP_004808157.1|	-	0.012	16.1	0.2	0.019	15.5	0.2	1.2	1	0	0	1	1	1	0	AAA	domain
MeaB	PF03308.16	gi|345005304|ref|YP_004808157.1|	-	0.031	13.3	0.3	0.051	12.6	0.3	1.3	1	0	0	1	1	1	0	Methylmalonyl	Co-A	mutase-associated	GTPase	MeaB
AAA_30	PF13604.6	gi|345005304|ref|YP_004808157.1|	-	0.039	13.7	0.3	0.28	10.9	0.1	2.2	3	0	0	3	3	3	0	AAA	domain
ATP_bind_1	PF03029.17	gi|345005304|ref|YP_004808157.1|	-	0.065	13.0	0.1	0.18	11.6	0.1	1.7	2	0	0	2	2	2	0	Conserved	hypothetical	ATP	binding	protein
AAA_13	PF13166.6	gi|345005304|ref|YP_004808157.1|	-	0.084	11.5	0.0	3.9	6.0	0.0	2.0	2	0	0	2	2	2	0	AAA	domain
AAA_28	PF13521.6	gi|345005304|ref|YP_004808157.1|	-	0.12	12.6	0.3	0.46	10.7	0.1	1.9	2	0	0	2	2	2	0	AAA	domain
AAA_22	PF13401.6	gi|345005304|ref|YP_004808157.1|	-	0.18	12.1	0.0	0.38	11.0	0.0	1.7	1	1	1	2	2	2	0	AAA	domain
AAA_29	PF13555.6	gi|345005304|ref|YP_004808157.1|	-	0.2	11.4	0.4	0.56	10.0	0.2	1.8	2	0	0	2	2	2	0	P-loop	containing	region	of	AAA	domain
tRNA-synt_1c	PF00749.21	gi|345005306|ref|YP_004808159.1|	-	5.2e-57	193.1	0.0	6.3e-57	192.8	0.0	1.1	1	0	0	1	1	1	1	tRNA	synthetases	class	I	(E	and	Q),	catalytic	domain
tRNA-synt_1c_C	PF03950.18	gi|345005306|ref|YP_004808159.1|	-	3.1e-18	66.3	0.0	1.3e-17	64.2	0.0	2.0	1	1	0	1	1	1	1	tRNA	synthetases	class	I	(E	and	Q),	anti-codon	binding	domain
tRNA-synt_1e	PF01406.19	gi|345005306|ref|YP_004808159.1|	-	0.079	12.3	0.1	0.19	11.1	0.0	1.7	2	0	0	2	2	2	0	tRNA	synthetases	class	I	(C)	catalytic	domain
Aminotran_3	PF00202.21	gi|345005307|ref|YP_004808160.1|	-	2.6e-84	283.2	0.0	3.2e-84	283.0	0.0	1.0	1	0	0	1	1	1	1	Aminotransferase	class-III
SepSecS	PF05889.13	gi|345005307|ref|YP_004808160.1|	-	0.098	11.3	0.0	0.2	10.3	0.0	1.4	2	0	0	2	2	2	0	O-phosphoseryl-tRNA(Sec)	selenium	transferase,	SepSecS
HypA	PF01155.19	gi|345005308|ref|YP_004808161.1|	-	0.0012	18.8	0.5	0.0015	18.5	0.5	1.3	1	1	0	1	1	1	1	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
zf-ribbon_3	PF13248.6	gi|345005308|ref|YP_004808161.1|	-	0.0022	17.4	1.5	0.44	10.0	0.3	2.4	2	0	0	2	2	2	2	zinc-ribbon	domain
Zn-ribbon_8	PF09723.10	gi|345005308|ref|YP_004808161.1|	-	0.013	15.5	1.4	0.024	14.7	1.4	1.4	1	0	0	1	1	1	0	Zinc	ribbon	domain
Rubredoxin_2	PF18073.1	gi|345005308|ref|YP_004808161.1|	-	0.021	14.5	5.7	0.044	13.5	0.3	2.2	2	0	0	2	2	2	0	Rubredoxin	metal	binding	domain
DZR	PF12773.7	gi|345005308|ref|YP_004808161.1|	-	0.046	13.8	1.2	0.099	12.7	1.3	1.4	1	1	0	1	1	1	0	Double	zinc	ribbon
DUF3659	PF12396.8	gi|345005308|ref|YP_004808161.1|	-	0.075	13.0	0.1	0.25	11.3	0.1	1.9	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3659)
HalOD2	PF18547.1	gi|345005308|ref|YP_004808161.1|	-	0.26	11.2	7.7	0.44	10.5	1.1	2.6	2	1	0	2	2	2	0	Halobacterial	output	domain	2
zinc_ribbon_2	PF13240.6	gi|345005308|ref|YP_004808161.1|	-	0.31	10.8	3.8	4.1	7.3	0.2	2.4	2	0	0	2	2	2	0	zinc-ribbon	domain
Rubredoxin	PF00301.20	gi|345005308|ref|YP_004808161.1|	-	3.1	7.9	6.4	16	5.6	0.1	2.7	2	1	0	3	3	3	0	Rubredoxin
Adeno_E3_14_5	PF04834.12	gi|345005310|ref|YP_004808163.1|	-	0.016	15.7	0.3	0.067	13.7	0.1	1.9	1	1	1	2	2	2	0	Early	E3	14.5	kDa	protein
Acetyltransf_1	PF00583.25	gi|345005312|ref|YP_004808165.1|	-	6.2e-07	29.7	0.0	1e-06	29.0	0.0	1.3	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_10	PF13673.7	gi|345005312|ref|YP_004808165.1|	-	2.3e-06	27.6	0.0	3.6e-06	26.9	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_7	PF13508.7	gi|345005312|ref|YP_004808165.1|	-	8.6e-05	22.9	0.0	0.00016	22.0	0.0	1.4	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_13	PF13880.6	gi|345005312|ref|YP_004808165.1|	-	0.0099	15.8	0.0	0.019	15.0	0.0	1.4	1	0	0	1	1	1	1	ESCO1/2	acetyl-transferase
Acetyltransf_9	PF13527.7	gi|345005312|ref|YP_004808165.1|	-	0.035	14.2	0.0	0.15	12.1	0.0	1.9	1	1	0	1	1	1	0	Acetyltransferase	(GNAT)	domain
Nudix_N_2	PF14803.6	gi|345005312|ref|YP_004808165.1|	-	0.074	13.0	2.6	0.22	11.5	2.6	1.8	1	1	0	1	1	1	0	Nudix	N-terminal
Tnp_P_element_C	PF12596.8	gi|345005312|ref|YP_004808165.1|	-	0.13	12.8	0.2	0.27	11.8	0.2	1.5	1	0	0	1	1	1	0	87kDa	Transposase
zf-NADH-PPase	PF09297.11	gi|345005312|ref|YP_004808165.1|	-	0.4	10.4	2.0	1.3	8.8	2.0	1.8	1	1	0	1	1	1	0	NADH	pyrophosphatase	zinc	ribbon	domain
PIN	PF01850.21	gi|345005314|ref|YP_004808167.1|	-	4.7e-08	33.6	0.0	5.7e-08	33.3	0.0	1.0	1	0	0	1	1	1	1	PIN	domain
MazE_antitoxin	PF04014.18	gi|345005315|ref|YP_004808168.1|	-	1.6e-07	31.0	0.2	2.4e-07	30.5	0.2	1.2	1	0	0	1	1	1	1	Antidote-toxin	recognition	MazE,	bacterial	antitoxin
PrlF_antitoxin	PF15937.5	gi|345005315|ref|YP_004808168.1|	-	0.0012	19.3	0.0	0.0019	18.6	0.0	1.4	1	0	0	1	1	1	1	prlF	antitoxin	for	toxin	YhaV_toxin
Zn-ribbon_8	PF09723.10	gi|345005316|ref|YP_004808169.1|	-	0.068	13.3	0.6	0.12	12.6	0.6	1.3	1	0	0	1	1	1	0	Zinc	ribbon	domain
adh_short	PF00106.25	gi|345005317|ref|YP_004808170.1|	-	5.4e-26	91.3	0.0	7.5e-26	90.8	0.0	1.2	1	0	0	1	1	1	1	short	chain	dehydrogenase
adh_short_C2	PF13561.6	gi|345005317|ref|YP_004808170.1|	-	7.5e-25	87.9	0.1	9.8e-25	87.5	0.1	1.1	1	0	0	1	1	1	1	Enoyl-(Acyl	carrier	protein)	reductase
KR	PF08659.10	gi|345005317|ref|YP_004808170.1|	-	3e-09	37.1	0.0	3.9e-09	36.7	0.0	1.1	1	0	0	1	1	1	1	KR	domain
Epimerase	PF01370.21	gi|345005317|ref|YP_004808170.1|	-	5.2e-05	22.8	0.4	0.00024	20.7	0.4	1.9	1	1	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
NmrA	PF05368.13	gi|345005317|ref|YP_004808170.1|	-	0.0029	17.2	0.2	0.0041	16.7	0.2	1.3	1	0	0	1	1	1	1	NmrA-like	family
NAD_binding_4	PF07993.12	gi|345005317|ref|YP_004808170.1|	-	0.0069	15.6	0.0	0.7	9.0	0.0	2.2	2	0	0	2	2	2	1	Male	sterility	protein
GDP_Man_Dehyd	PF16363.5	gi|345005317|ref|YP_004808170.1|	-	0.026	13.9	0.1	0.11	11.9	0.0	1.8	2	0	0	2	2	2	0	GDP-mannose	4,6	dehydratase
NAD_binding_10	PF13460.6	gi|345005317|ref|YP_004808170.1|	-	0.039	13.8	2.0	0.062	13.2	2.0	1.6	1	1	0	1	1	1	0	NAD(P)H-binding
RmlD_sub_bind	PF04321.17	gi|345005317|ref|YP_004808170.1|	-	0.04	13.0	0.1	0.063	12.4	0.1	1.3	1	0	0	1	1	1	0	RmlD	substrate	binding	domain
DapB_N	PF01113.20	gi|345005317|ref|YP_004808170.1|	-	0.071	13.2	0.2	0.12	12.5	0.2	1.4	1	0	0	1	1	1	0	Dihydrodipicolinate	reductase,	N-terminus
Polysacc_synt_2	PF02719.15	gi|345005317|ref|YP_004808170.1|	-	0.14	11.3	0.1	0.26	10.4	0.1	1.5	1	1	0	1	1	1	0	Polysaccharide	biosynthesis	protein
Ldh_1_N	PF00056.23	gi|345005317|ref|YP_004808170.1|	-	0.42	10.7	1.8	2.9	8.0	1.8	2.1	1	1	0	1	1	1	0	lactate/malate	dehydrogenase,	NAD	binding	domain
Amino_oxidase	PF01593.24	gi|345005318|ref|YP_004808171.1|	-	1.3e-30	107.1	0.1	1e-29	104.2	0.1	1.9	1	1	0	1	1	1	1	Flavin	containing	amine	oxidoreductase
NAD_binding_8	PF13450.6	gi|345005318|ref|YP_004808171.1|	-	1.7e-16	60.2	0.1	5.5e-16	58.5	0.1	1.9	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
DAO	PF01266.24	gi|345005318|ref|YP_004808171.1|	-	9.2e-09	35.3	6.3	1.3e-08	34.9	1.3	2.9	2	2	0	2	2	2	1	FAD	dependent	oxidoreductase
Pyr_redox	PF00070.27	gi|345005318|ref|YP_004808171.1|	-	3e-07	30.9	0.5	1.7e-05	25.3	0.3	2.9	3	1	1	4	4	3	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_2	PF07992.14	gi|345005318|ref|YP_004808171.1|	-	1.5e-06	27.7	0.3	7.9e-06	25.3	0.3	2.0	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_oxidored	PF12831.7	gi|345005318|ref|YP_004808171.1|	-	3.4e-06	26.7	0.0	1.7e-05	24.4	0.0	1.9	2	0	0	2	2	2	1	FAD	dependent	oxidoreductase
FAD_binding_2	PF00890.24	gi|345005318|ref|YP_004808171.1|	-	8.8e-05	21.7	1.9	0.00014	21.1	1.9	1.2	1	0	0	1	1	1	1	FAD	binding	domain
FAD_binding_3	PF01494.19	gi|345005318|ref|YP_004808171.1|	-	0.00022	20.6	0.3	0.00039	19.8	0.3	1.3	1	0	0	1	1	1	1	FAD	binding	domain
HI0933_like	PF03486.14	gi|345005318|ref|YP_004808171.1|	-	0.00022	20.0	0.0	0.0015	17.3	0.4	2.0	2	0	0	2	2	2	1	HI0933-like	protein
Pyr_redox_3	PF13738.6	gi|345005318|ref|YP_004808171.1|	-	0.0059	15.9	0.0	0.016	14.5	0.0	1.6	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
ApbA	PF02558.16	gi|345005318|ref|YP_004808171.1|	-	0.0067	16.1	0.2	0.012	15.3	0.2	1.4	1	0	0	1	1	1	1	Ketopantoate	reductase	PanE/ApbA
GIDA	PF01134.22	gi|345005318|ref|YP_004808171.1|	-	0.0075	15.4	1.1	0.013	14.6	1.1	1.4	1	0	0	1	1	1	1	Glucose	inhibited	division	protein	A
Thi4	PF01946.17	gi|345005318|ref|YP_004808171.1|	-	0.01	15.1	0.2	0.02	14.2	0.2	1.3	1	0	0	1	1	1	0	Thi4	family
3HCDH_N	PF02737.18	gi|345005318|ref|YP_004808171.1|	-	0.014	15.3	0.2	0.024	14.6	0.2	1.3	1	0	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
MCRA	PF06100.11	gi|345005318|ref|YP_004808171.1|	-	0.029	13.2	0.0	0.039	12.7	0.0	1.1	1	0	0	1	1	1	0	MCRA	family
NAD_binding_7	PF13241.6	gi|345005318|ref|YP_004808171.1|	-	0.03	14.8	0.0	0.069	13.6	0.0	1.6	1	0	0	1	1	1	0	Putative	NAD(P)-binding
AlaDh_PNT_C	PF01262.21	gi|345005318|ref|YP_004808171.1|	-	0.032	13.5	0.3	0.053	12.8	0.3	1.2	1	0	0	1	1	1	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
IlvN	PF07991.12	gi|345005318|ref|YP_004808171.1|	-	0.046	13.3	0.0	0.081	12.5	0.0	1.4	1	0	0	1	1	1	0	Acetohydroxy	acid	isomeroreductase,	NADPH-binding	domain
FMO-like	PF00743.19	gi|345005318|ref|YP_004808171.1|	-	0.28	9.6	0.1	0.39	9.1	0.1	1.1	1	0	0	1	1	1	0	Flavin-binding	monooxygenase-like
UbiA	PF01040.18	gi|345005319|ref|YP_004808172.1|	-	6.9e-29	100.9	14.8	6.9e-29	100.9	14.8	1.3	1	1	0	1	1	1	1	UbiA	prenyltransferase	family
Caroten_synth	PF04240.12	gi|345005320|ref|YP_004808173.1|	-	1.6e-64	217.6	17.6	2.3e-64	217.1	17.6	1.2	1	0	0	1	1	1	1	Carotenoid	biosynthesis	protein
TMEM238	PF15125.6	gi|345005320|ref|YP_004808173.1|	-	0.0085	16.3	0.3	0.0085	16.3	0.3	2.9	3	1	0	3	3	3	1	TMEM238	protein	family
DUF2627	PF11118.8	gi|345005320|ref|YP_004808173.1|	-	2.1	9.0	4.4	3	8.5	0.3	2.9	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF2627)
HNH_2	PF13391.6	gi|345005321|ref|YP_004808174.1|	-	9.6e-06	25.7	1.3	5.6e-05	23.2	0.7	2.5	2	1	0	2	2	2	1	HNH	endonuclease
OrfB_Zn_ribbon	PF07282.11	gi|345005322|ref|YP_004808175.1|	-	1.8e-17	63.0	0.3	3.5e-17	62.1	0.3	1.5	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
OrfB_IS605	PF01385.19	gi|345005322|ref|YP_004808175.1|	-	7.5e-16	58.4	0.0	1.5e-15	57.4	0.0	1.5	1	0	0	1	1	1	1	Probable	transposase
HTH_OrfB_IS605	PF12323.8	gi|345005322|ref|YP_004808175.1|	-	8e-06	25.2	0.1	2.6e-05	23.6	0.0	1.8	2	0	0	2	2	2	1	Helix-turn-helix	domain
DZR	PF12773.7	gi|345005322|ref|YP_004808175.1|	-	0.053	13.6	1.5	0.092	12.8	1.5	1.4	1	0	0	1	1	1	0	Double	zinc	ribbon
Zn_Tnp_IS91	PF14319.6	gi|345005322|ref|YP_004808175.1|	-	0.062	13.3	1.4	0.19	11.8	1.4	1.8	1	0	0	1	1	1	0	Transposase	zinc-binding	domain
zf-ribbon_3	PF13248.6	gi|345005322|ref|YP_004808175.1|	-	0.1	12.0	1.9	3.1	7.3	0.1	2.4	2	0	0	2	2	2	0	zinc-ribbon	domain
GerPE	PF10970.8	gi|345005322|ref|YP_004808175.1|	-	0.17	12.1	0.0	0.31	11.2	0.0	1.3	1	0	0	1	1	1	0	Spore	germination	protein	GerPE
Rubredoxin_2	PF18073.1	gi|345005322|ref|YP_004808175.1|	-	0.37	10.6	3.9	0.94	9.3	3.9	1.7	1	1	0	1	1	1	0	Rubredoxin	metal	binding	domain
SQS_PSY	PF00494.19	gi|345005323|ref|YP_004808176.1|	-	1.6e-64	218.0	6.3	2e-64	217.6	6.3	1.1	1	0	0	1	1	1	1	Squalene/phytoene	synthase
Rieske	PF00355.26	gi|345005324|ref|YP_004808177.1|	-	0.0042	17.0	2.5	0.0044	16.9	2.5	1.0	1	0	0	1	1	1	1	Rieske	[2Fe-2S]	domain
zf-C4_Topoisom	PF01396.19	gi|345005324|ref|YP_004808177.1|	-	0.036	13.8	1.8	0.075	12.8	1.8	1.6	1	1	0	1	1	1	0	Topoisomerase	DNA	binding	C4	zinc	finger
Tax	PF02959.16	gi|345005324|ref|YP_004808177.1|	-	0.043	13.3	0.5	0.045	13.2	0.5	1.0	1	0	0	1	1	1	0	HTLV	Tax
A2L_zn_ribbon	PF08792.10	gi|345005324|ref|YP_004808177.1|	-	0.13	12.0	2.3	3.1	7.6	0.6	2.2	1	1	1	2	2	2	0	A2L	zinc	ribbon	domain
Ogr_Delta	PF04606.12	gi|345005324|ref|YP_004808177.1|	-	0.18	11.8	5.3	0.3	11.1	5.3	1.5	1	1	0	1	1	1	0	Ogr/Delta-like	zinc	finger
zf-Mss51	PF13824.6	gi|345005324|ref|YP_004808177.1|	-	0.37	10.9	6.4	0.49	10.5	6.4	1.3	1	0	0	1	1	1	0	Zinc-finger	of	mitochondrial	splicing	suppressor	51
Oxidored_molyb	PF00174.19	gi|345005325|ref|YP_004808178.1|	-	6.8e-33	113.7	0.0	1.1e-32	113.1	0.0	1.2	1	0	0	1	1	1	1	Oxidoreductase	molybdopterin	binding	domain
Mo-co_dimer	PF03404.16	gi|345005325|ref|YP_004808178.1|	-	4.8e-12	46.1	0.0	9.1e-12	45.2	0.0	1.4	1	0	0	1	1	1	1	Mo-co	oxidoreductase	dimerisation	domain
BNR	PF02012.20	gi|345005325|ref|YP_004808178.1|	-	0.056	13.5	0.6	0.17	12.0	0.6	1.9	1	0	0	1	1	1	0	BNR/Asp-box	repeat
Amidohydro_1	PF01979.20	gi|345005326|ref|YP_004808179.1|	-	4.8e-69	233.3	2.3	5.6e-69	233.1	2.3	1.0	1	0	0	1	1	1	1	Amidohydrolase	family
Amidohydro_3	PF07969.11	gi|345005326|ref|YP_004808179.1|	-	4.9e-27	95.5	11.0	7.6e-23	81.7	6.5	2.2	2	0	0	2	2	2	2	Amidohydrolase	family
A_deaminase	PF00962.22	gi|345005326|ref|YP_004808179.1|	-	0.0011	18.4	0.0	0.0026	17.2	0.0	1.6	2	0	0	2	2	2	1	Adenosine/AMP	deaminase
Ribonuc_red_lgC	PF02867.15	gi|345005327|ref|YP_004808180.1|	-	1.4e-147	492.5	0.0	1.7e-147	492.2	0.0	1.1	1	0	0	1	1	1	1	Ribonucleotide	reductase,	barrel	domain
LAGLIDADG_3	PF14528.6	gi|345005327|ref|YP_004808180.1|	-	2.1e-23	82.4	0.1	5.4e-23	81.1	0.1	1.8	1	0	0	1	1	1	1	LAGLIDADG-like	domain
Ribonuc_red_lgN	PF00317.21	gi|345005327|ref|YP_004808180.1|	-	2.2e-23	82.1	0.1	6.4e-23	80.6	0.1	1.8	1	0	0	1	1	1	1	Ribonucleotide	reductase,	all-alpha	domain
Intein_splicing	PF14890.6	gi|345005327|ref|YP_004808180.1|	-	2.3e-17	63.2	0.0	5.3e-17	62.0	0.0	1.6	1	0	0	1	1	1	1	Intein	splicing	domain
TraG-D_C	PF12696.7	gi|345005327|ref|YP_004808180.1|	-	0.08	12.9	0.0	0.27	11.2	0.0	1.8	2	0	0	2	2	2	0	TraM	recognition	site	of	TraD	and	TraG
OrfB_Zn_ribbon	PF07282.11	gi|345005328|ref|YP_004808181.1|	-	2e-23	82.1	1.6	2e-23	82.1	1.6	1.9	3	0	0	3	3	3	1	Putative	transposase	DNA-binding	domain
OrfB_IS605	PF01385.19	gi|345005328|ref|YP_004808181.1|	-	2.2e-07	31.1	0.4	4.5e-07	30.1	0.1	1.7	2	0	0	2	2	2	1	Probable	transposase
HypA	PF01155.19	gi|345005328|ref|YP_004808181.1|	-	0.0046	17.0	0.3	0.0098	15.9	0.3	1.5	1	0	0	1	1	1	1	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
C1_2	PF03107.16	gi|345005328|ref|YP_004808181.1|	-	0.021	15.1	2.3	0.05	13.9	2.3	1.6	1	0	0	1	1	1	0	C1	domain
DUF2072	PF09845.9	gi|345005328|ref|YP_004808181.1|	-	0.081	13.2	2.5	5.5	7.3	0.0	2.6	2	0	0	2	2	2	0	Zn-ribbon	containing	protein
zf-Mss51	PF13824.6	gi|345005328|ref|YP_004808181.1|	-	2.1	8.5	7.4	1.7	8.8	3.2	2.9	2	1	0	2	2	2	0	Zinc-finger	of	mitochondrial	splicing	suppressor	51
zinc_ribbon_2	PF13240.6	gi|345005328|ref|YP_004808181.1|	-	3.6	7.4	6.1	20	5.1	6.1	2.2	1	1	1	2	2	2	0	zinc-ribbon	domain
RNA_POL_M_15KD	PF02150.16	gi|345005328|ref|YP_004808181.1|	-	4.6	7.2	8.4	5	7.1	5.0	2.7	2	1	1	3	3	3	0	RNA	polymerases	M/15	Kd	subunit
Fzo_mitofusin	PF04799.13	gi|345005329|ref|YP_004808182.1|	-	0.049	13.2	7.6	0.056	13.0	7.6	1.1	1	0	0	1	1	1	0	fzo-like	conserved	region
GATase	PF00117.28	gi|345005330|ref|YP_004808183.1|	-	8.3e-43	146.4	0.0	9.6e-43	146.2	0.0	1.0	1	0	0	1	1	1	1	Glutamine	amidotransferase	class-I
Peptidase_C26	PF07722.13	gi|345005330|ref|YP_004808183.1|	-	4.4e-05	23.3	0.1	0.00042	20.1	0.1	2.0	1	1	0	1	1	1	1	Peptidase	C26
Chorismate_bind	PF00425.18	gi|345005331|ref|YP_004808184.1|	-	1e-90	303.8	0.0	8.6e-90	300.8	0.0	2.0	2	0	0	2	2	2	1	chorismate	binding	enzyme
Anth_synt_I_N	PF04715.13	gi|345005331|ref|YP_004808184.1|	-	2.1e-16	60.4	0.0	5.7e-10	39.6	0.0	3.5	3	0	0	3	3	3	2	Anthranilate	synthase	component	I,	N	terminal	region
PRAI	PF00697.22	gi|345005332|ref|YP_004808185.1|	-	1.1e-35	123.3	0.0	1.2e-35	123.1	0.0	1.0	1	0	0	1	1	1	1	N-(5'phosphoribosyl)anthranilate	(PRA)	isomerase
TMP-TENI	PF02581.17	gi|345005332|ref|YP_004808185.1|	-	0.0021	17.4	0.3	0.0037	16.6	0.1	1.6	2	0	0	2	2	2	1	Thiamine	monophosphate	synthase
NMO	PF03060.15	gi|345005332|ref|YP_004808185.1|	-	0.003	17.0	1.0	0.0041	16.5	0.2	1.6	1	1	0	1	1	1	1	Nitronate	monooxygenase
BtpA	PF03437.15	gi|345005332|ref|YP_004808185.1|	-	0.027	13.9	0.3	0.17	11.3	0.0	2.0	1	1	1	2	2	2	0	BtpA	family
DUF1611_N	PF17396.2	gi|345005332|ref|YP_004808185.1|	-	0.098	12.9	0.0	0.32	11.2	0.0	2.1	2	1	0	2	2	2	0	Domain	of	unknown	function	(DUF1611_N)	Rossmann-like	domain
Glycos_transf_3	PF00591.21	gi|345005333|ref|YP_004808186.1|	-	1.1e-100	336.4	2.4	1.5e-100	336.0	2.4	1.2	1	0	0	1	1	1	1	Glycosyl	transferase	family,	a/b	domain
Glycos_trans_3N	PF02885.17	gi|345005333|ref|YP_004808186.1|	-	4.5e-16	58.5	4.9	2.2e-15	56.2	3.7	2.5	2	0	0	2	2	2	1	Glycosyl	transferase	family,	helical	bundle	domain
DUF2717	PF10911.8	gi|345005333|ref|YP_004808186.1|	-	0.0091	15.7	0.0	0.024	14.4	0.0	1.7	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF2717)
Bac_globin	PF01152.21	gi|345005334|ref|YP_004808187.1|	-	2e-23	82.8	0.0	2.3e-23	82.6	0.0	1.0	1	0	0	1	1	1	1	Bacterial-like	globin
Protoglobin	PF11563.8	gi|345005334|ref|YP_004808187.1|	-	0.013	15.4	0.0	0.051	13.5	0.0	1.7	1	1	1	2	2	2	0	Protoglobin
HTH_10	PF04967.12	gi|345005335|ref|YP_004808188.1|	-	3.4e-15	55.6	0.1	5.7e-15	54.8	0.1	1.4	1	0	0	1	1	1	1	HTH	DNA	binding	domain
HTH_IclR	PF09339.10	gi|345005335|ref|YP_004808188.1|	-	0.0096	15.7	0.6	0.074	12.9	0.1	2.5	2	0	0	2	2	2	1	IclR	helix-turn-helix	domain
BAT	PF15915.5	gi|345005335|ref|YP_004808188.1|	-	0.012	15.5	0.7	0.012	15.5	0.7	1.8	2	1	0	2	2	2	0	GAF	and	HTH_10	associated	domain
MarR_2	PF12802.7	gi|345005335|ref|YP_004808188.1|	-	0.021	14.7	1.7	0.057	13.3	0.3	2.4	2	1	0	2	2	2	0	MarR	family
HTH_35	PF13693.6	gi|345005335|ref|YP_004808188.1|	-	0.044	13.8	0.0	0.11	12.6	0.0	1.6	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
DUF4268	PF14088.6	gi|345005336|ref|YP_004808189.1|	-	1.6e-28	99.3	0.2	1.9e-27	95.9	0.0	2.4	2	1	1	3	3	3	1	Domain	of	unknown	function	(DUF4268)
NucS	PF01939.16	gi|345005336|ref|YP_004808189.1|	-	0.1	11.9	0.0	0.17	11.2	0.0	1.3	1	0	0	1	1	1	0	Endonuclease	NucS
HATPase_c	PF02518.26	gi|345005337|ref|YP_004808190.1|	-	3.5e-17	62.9	1.2	8.3e-17	61.7	0.2	2.1	1	1	1	2	2	2	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
GAF_2	PF13185.6	gi|345005337|ref|YP_004808190.1|	-	9.4e-10	38.9	0.0	2.7e-09	37.5	0.0	1.8	1	0	0	1	1	1	1	GAF	domain
PAS_4	PF08448.10	gi|345005337|ref|YP_004808190.1|	-	2.6e-06	27.7	0.7	5.2e-06	26.7	0.2	1.8	2	0	0	2	2	2	1	PAS	fold
HisKA	PF00512.25	gi|345005337|ref|YP_004808190.1|	-	1.1e-05	25.4	0.6	1.1e-05	25.4	0.6	1.9	2	0	0	2	2	2	1	His	Kinase	A	(phospho-acceptor)	domain
HATPase_c_2	PF13581.6	gi|345005337|ref|YP_004808190.1|	-	4.2e-05	23.5	0.0	0.00012	22.0	0.0	1.9	1	0	0	1	1	1	1	Histidine	kinase-like	ATPase	domain
HATPase_c_5	PF14501.6	gi|345005337|ref|YP_004808190.1|	-	0.0006	19.7	0.0	0.0017	18.2	0.0	1.8	1	0	0	1	1	1	1	GHKL	domain
PAS_9	PF13426.7	gi|345005337|ref|YP_004808190.1|	-	0.012	15.9	0.2	0.037	14.3	0.0	1.9	2	0	0	2	2	2	0	PAS	domain
HisKA_4TM	PF16926.5	gi|345005337|ref|YP_004808190.1|	-	0.013	15.1	0.1	0.038	13.6	0.1	1.8	2	0	0	2	2	2	0	Archaeal	4TM	region	of	histidine	kinase
AnfG_VnfG	PF03139.15	gi|345005337|ref|YP_004808190.1|	-	0.055	13.6	0.0	0.21	11.7	0.0	1.9	1	1	0	1	1	1	0	Vanadium/alternative	nitrogenase	delta	subunit
DUF4061	PF13270.6	gi|345005337|ref|YP_004808190.1|	-	0.11	12.8	0.3	0.23	11.8	0.3	1.5	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4061)
Peripla_BP_6	PF13458.6	gi|345005338|ref|YP_004808191.1|	-	2.9e-55	188.3	7.5	3.6e-55	188.0	7.5	1.1	1	0	0	1	1	1	1	Periplasmic	binding	protein
ANF_receptor	PF01094.28	gi|345005338|ref|YP_004808191.1|	-	2.8e-28	99.1	0.0	4.5e-28	98.4	0.0	1.3	1	0	0	1	1	1	1	Receptor	family	ligand	binding	region
Peripla_BP_5	PF13433.6	gi|345005338|ref|YP_004808191.1|	-	2.8e-12	46.3	1.9	1e-11	44.5	1.9	1.8	1	1	0	1	1	1	1	Periplasmic	binding	protein	domain
TAT_signal	PF10518.9	gi|345005338|ref|YP_004808191.1|	-	5.4e-06	26.0	0.9	5.4e-06	26.0	0.9	2.4	2	0	0	2	2	2	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
BPD_transp_2	PF02653.16	gi|345005339|ref|YP_004808192.1|	-	2.5e-45	154.7	33.9	2.9e-45	154.5	33.9	1.0	1	0	0	1	1	1	1	Branched-chain	amino	acid	transport	system	/	permease	component
BPD_transp_2	PF02653.16	gi|345005340|ref|YP_004808193.1|	-	6e-39	133.8	44.2	6.8e-39	133.6	44.2	1.0	1	0	0	1	1	1	1	Branched-chain	amino	acid	transport	system	/	permease	component
DUF4834	PF16118.5	gi|345005340|ref|YP_004808193.1|	-	1.9	9.5	5.9	0.28	12.2	0.9	2.2	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4834)
SP_C-Propep	PF08999.10	gi|345005340|ref|YP_004808193.1|	-	3.6	7.4	7.8	0.58	10.0	3.0	2.2	1	1	1	2	2	2	0	Surfactant	protein	C,	N	terminal	propeptide
ABC_tran	PF00005.27	gi|345005341|ref|YP_004808194.1|	-	1.5e-30	106.5	0.0	1.9e-30	106.1	0.0	1.1	1	0	0	1	1	1	1	ABC	transporter
BCA_ABC_TP_C	PF12399.8	gi|345005341|ref|YP_004808194.1|	-	1e-09	38.1	0.2	2.6e-09	36.8	0.2	1.7	1	0	0	1	1	1	1	Branched-chain	amino	acid	ATP-binding	cassette	transporter
AAA_21	PF13304.6	gi|345005341|ref|YP_004808194.1|	-	1.9e-06	27.9	1.4	0.0011	18.8	0.1	2.1	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_23	PF13476.6	gi|345005341|ref|YP_004808194.1|	-	0.0011	19.5	1.0	0.0013	19.2	1.0	1.6	1	1	0	1	1	1	1	AAA	domain
SMC_N	PF02463.19	gi|345005341|ref|YP_004808194.1|	-	0.0017	17.9	0.5	0.84	9.0	0.1	2.1	2	0	0	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
AAA_30	PF13604.6	gi|345005341|ref|YP_004808194.1|	-	0.005	16.6	0.3	0.0094	15.7	0.1	1.5	2	0	0	2	2	2	1	AAA	domain
AAA_22	PF13401.6	gi|345005341|ref|YP_004808194.1|	-	0.0069	16.7	0.4	0.034	14.4	0.4	2.0	1	1	0	1	1	1	1	AAA	domain
AAA	PF00004.29	gi|345005341|ref|YP_004808194.1|	-	0.013	16.0	0.2	0.14	12.6	0.2	2.3	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_27	PF13514.6	gi|345005341|ref|YP_004808194.1|	-	0.016	14.8	0.6	0.062	12.9	0.1	2.0	2	0	0	2	2	2	0	AAA	domain
AAA_29	PF13555.6	gi|345005341|ref|YP_004808194.1|	-	0.049	13.4	0.1	0.11	12.2	0.1	1.5	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
MukB	PF04310.12	gi|345005341|ref|YP_004808194.1|	-	0.094	12.5	0.1	0.16	11.8	0.1	1.3	1	0	0	1	1	1	0	MukB	N-terminal
AAA_16	PF13191.6	gi|345005341|ref|YP_004808194.1|	-	0.11	12.9	0.6	0.34	11.3	0.6	1.8	1	1	0	1	1	1	0	AAA	ATPase	domain
AAA_15	PF13175.6	gi|345005341|ref|YP_004808194.1|	-	0.13	11.9	0.1	0.52	10.0	0.0	1.8	2	0	0	2	2	2	0	AAA	ATPase	domain
NurA	PF09376.10	gi|345005341|ref|YP_004808194.1|	-	0.14	11.8	0.1	0.2	11.3	0.1	1.1	1	0	0	1	1	1	0	NurA	domain
ABC_tran	PF00005.27	gi|345005342|ref|YP_004808195.1|	-	1.4e-32	113.0	0.0	1.9e-32	112.6	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|345005342|ref|YP_004808195.1|	-	9.3e-12	45.4	0.6	4.7e-05	23.3	0.1	2.2	1	1	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_23	PF13476.6	gi|345005342|ref|YP_004808195.1|	-	5.1e-05	23.9	0.0	8.1e-05	23.2	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
SMC_N	PF02463.19	gi|345005342|ref|YP_004808195.1|	-	7.5e-05	22.3	0.0	0.0066	15.9	0.0	2.2	2	0	0	2	2	2	1	RecF/RecN/SMC	N	terminal	domain
RsgA_GTPase	PF03193.16	gi|345005342|ref|YP_004808195.1|	-	0.00016	21.7	0.0	0.00028	20.8	0.0	1.3	1	0	0	1	1	1	1	RsgA	GTPase
AAA_29	PF13555.6	gi|345005342|ref|YP_004808195.1|	-	0.00023	20.8	0.0	0.00047	19.9	0.0	1.5	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
Dynamin_N	PF00350.23	gi|345005342|ref|YP_004808195.1|	-	0.00046	20.3	0.0	0.00072	19.7	0.0	1.3	1	1	0	1	1	1	1	Dynamin	family
AAA_22	PF13401.6	gi|345005342|ref|YP_004808195.1|	-	0.00097	19.4	0.1	0.0064	16.8	0.1	2.0	1	1	0	1	1	1	1	AAA	domain
AAA_27	PF13514.6	gi|345005342|ref|YP_004808195.1|	-	0.001	18.7	0.0	0.0053	16.4	0.0	1.9	2	0	0	2	2	2	1	AAA	domain
MMR_HSR1	PF01926.23	gi|345005342|ref|YP_004808195.1|	-	0.001	19.1	0.1	0.002	18.2	0.1	1.7	1	1	0	1	1	1	1	50S	ribosome-binding	GTPase
AAA_15	PF13175.6	gi|345005342|ref|YP_004808195.1|	-	0.0012	18.6	0.0	0.014	15.2	0.0	2.0	2	0	0	2	2	2	1	AAA	ATPase	domain
AAA_30	PF13604.6	gi|345005342|ref|YP_004808195.1|	-	0.0053	16.5	0.1	0.058	13.1	0.0	2.1	2	1	0	2	2	2	1	AAA	domain
AAA_16	PF13191.6	gi|345005342|ref|YP_004808195.1|	-	0.0077	16.6	0.5	0.037	14.4	0.5	2.0	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_25	PF13481.6	gi|345005342|ref|YP_004808195.1|	-	0.009	15.6	0.1	0.035	13.7	0.0	1.8	2	0	0	2	2	2	1	AAA	domain
AAA_33	PF13671.6	gi|345005342|ref|YP_004808195.1|	-	0.031	14.4	0.3	0.041	14.0	0.3	1.6	1	1	0	1	1	1	0	AAA	domain
NACHT	PF05729.12	gi|345005342|ref|YP_004808195.1|	-	0.039	13.9	0.2	0.066	13.1	0.2	1.3	1	0	0	1	1	1	0	NACHT	domain
FtsK_SpoIIIE	PF01580.18	gi|345005342|ref|YP_004808195.1|	-	0.065	12.6	0.0	0.11	11.8	0.0	1.3	1	0	0	1	1	1	0	FtsK/SpoIIIE	family
cobW	PF02492.19	gi|345005342|ref|YP_004808195.1|	-	0.1	12.2	0.1	0.19	11.3	0.1	1.4	1	0	0	1	1	1	0	CobW/HypB/UreG,	nucleotide-binding	domain
NB-ARC	PF00931.22	gi|345005342|ref|YP_004808195.1|	-	0.11	11.6	0.1	0.17	11.0	0.1	1.2	1	0	0	1	1	1	0	NB-ARC	domain
AAA_14	PF13173.6	gi|345005342|ref|YP_004808195.1|	-	0.14	12.2	0.0	0.32	11.0	0.0	1.6	2	0	0	2	2	2	0	AAA	domain
AAA_24	PF13479.6	gi|345005342|ref|YP_004808195.1|	-	0.17	11.6	0.2	0.27	10.9	0.2	1.2	1	0	0	1	1	1	0	AAA	domain
AAA_7	PF12775.7	gi|345005342|ref|YP_004808195.1|	-	0.18	11.3	0.0	0.27	10.7	0.0	1.2	1	0	0	1	1	1	0	P-loop	containing	dynein	motor	region
AAA_10	PF12846.7	gi|345005342|ref|YP_004808195.1|	-	0.18	10.7	0.0	0.28	10.1	0.0	1.2	1	0	0	1	1	1	0	AAA-like	domain
ABC_ATPase	PF09818.9	gi|345005342|ref|YP_004808195.1|	-	0.21	10.4	0.4	0.41	9.4	0.2	1.5	2	0	0	2	2	2	0	Predicted	ATPase	of	the	ABC	class
ATPase_2	PF01637.18	gi|345005342|ref|YP_004808195.1|	-	0.23	11.3	0.0	0.39	10.6	0.0	1.3	1	0	0	1	1	1	0	ATPase	domain	predominantly	from	Archaea
Peptidase_S8	PF00082.22	gi|345005343|ref|YP_004808196.1|	-	5.8e-49	167.0	0.8	8.2e-49	166.5	0.8	1.1	1	0	0	1	1	1	1	Subtilase	family
ANTAR	PF03861.14	gi|345005343|ref|YP_004808196.1|	-	0.049	13.5	0.1	0.13	12.1	0.1	1.7	1	0	0	1	1	1	0	ANTAR	domain
FAD-oxidase_C	PF02913.19	gi|345005344|ref|YP_004808197.1|	-	9.4e-63	212.2	0.0	1.3e-62	211.7	0.0	1.2	1	0	0	1	1	1	1	FAD	linked	oxidases,	C-terminal	domain
FAD_binding_4	PF01565.23	gi|345005344|ref|YP_004808197.1|	-	7e-38	129.5	0.1	1.3e-37	128.7	0.1	1.4	1	0	0	1	1	1	1	FAD	binding	domain
Fer2	PF00111.27	gi|345005345|ref|YP_004808198.1|	-	1.5e-05	24.8	0.2	2.3e-05	24.2	0.2	1.4	1	1	0	1	1	1	1	2Fe-2S	iron-sulfur	cluster	binding	domain
Fer2_4	PF13510.6	gi|345005345|ref|YP_004808198.1|	-	0.069	13.2	0.7	0.23	11.5	0.7	1.8	1	1	0	1	1	1	0	2Fe-2S	iron-sulfur	cluster	binding	domain
YdjM	PF04307.14	gi|345005346|ref|YP_004808199.1|	-	0.00036	19.9	15.6	0.0055	16.0	15.6	2.4	1	1	0	1	1	1	1	LexA-binding,	inner	membrane-associated	putative	hydrolase
ApoL	PF05461.11	gi|345005346|ref|YP_004808199.1|	-	0.86	8.9	2.3	1.2	8.4	2.3	1.1	1	0	0	1	1	1	0	Apolipoprotein	L
PAP2	PF01569.21	gi|345005346|ref|YP_004808199.1|	-	2.5	7.9	9.5	0.36	10.6	1.1	2.6	2	1	0	2	2	2	0	PAP2	superfamily
Methyltransf_31	PF13847.6	gi|345005347|ref|YP_004808200.1|	-	9.5e-09	35.2	0.0	2.6e-08	33.8	0.0	1.7	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.6	gi|345005347|ref|YP_004808200.1|	-	1.9e-08	34.9	0.6	2.7e-07	31.2	0.3	2.7	2	1	0	2	2	2	1	Methyltransferase	domain
Methyltransf_11	PF08241.12	gi|345005347|ref|YP_004808200.1|	-	1.8e-07	31.7	0.3	8e-07	29.6	0.2	2.1	2	1	0	2	2	2	1	Methyltransferase	domain
Methyltransf_23	PF13489.6	gi|345005347|ref|YP_004808200.1|	-	4.8e-06	26.5	0.0	1.4e-05	25.0	0.0	1.9	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.12	gi|345005347|ref|YP_004808200.1|	-	2.7e-05	24.8	0.0	9.5e-05	23.1	0.0	2.0	1	1	0	1	1	1	1	Methyltransferase	domain
MetW	PF07021.12	gi|345005347|ref|YP_004808200.1|	-	0.058	13.0	0.0	0.099	12.2	0.0	1.3	1	0	0	1	1	1	0	Methionine	biosynthesis	protein	MetW
MTS	PF05175.14	gi|345005347|ref|YP_004808200.1|	-	0.11	12.0	0.0	0.37	10.3	0.0	1.9	1	1	0	1	1	1	0	Methyltransferase	small	domain
PTPS	PF01242.19	gi|345005348|ref|YP_004808201.1|	-	2.8e-21	75.7	0.0	3.3e-21	75.5	0.0	1.0	1	0	0	1	1	1	1	6-pyruvoyl	tetrahydropterin	synthase
ADH_zinc_N	PF00107.26	gi|345005349|ref|YP_004808202.1|	-	3.9e-11	43.0	0.0	6.8e-11	42.3	0.0	1.3	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
Glu_dehyd_C	PF16912.5	gi|345005349|ref|YP_004808202.1|	-	0.00014	21.5	0.0	0.0003	20.3	0.0	1.6	1	1	0	1	1	1	1	Glucose	dehydrogenase	C-terminus
ADH_zinc_N_2	PF13602.6	gi|345005349|ref|YP_004808202.1|	-	0.00043	21.3	0.1	0.00086	20.4	0.1	1.5	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
ADH_N	PF08240.12	gi|345005349|ref|YP_004808202.1|	-	0.027	14.3	0.0	0.13	12.1	0.0	2.1	2	0	0	2	2	2	0	Alcohol	dehydrogenase	GroES-like	domain
CDP-OH_P_transf	PF01066.21	gi|345005350|ref|YP_004808203.1|	-	4.6e-07	30.5	0.8	4.6e-07	30.5	0.8	2.2	3	0	0	3	3	3	1	CDP-alcohol	phosphatidyltransferase
DUF2604	PF10790.9	gi|345005350|ref|YP_004808203.1|	-	0.047	14.0	0.0	0.077	13.3	0.0	1.3	1	0	0	1	1	1	0	Protein	of	Unknown	function	(DUF2604)
Aldo_ket_red	PF00248.21	gi|345005351|ref|YP_004808204.1|	-	7.9e-36	123.7	0.0	6e-28	97.9	0.0	2.1	1	1	1	2	2	2	2	Aldo/keto	reductase	family
GFO_IDH_MocA	PF01408.22	gi|345005351|ref|YP_004808204.1|	-	2.5e-18	67.0	0.8	3.7e-17	63.2	0.1	2.6	3	0	0	3	3	3	1	Oxidoreductase	family,	NAD-binding	Rossmann	fold
NAD_binding_3	PF03447.16	gi|345005351|ref|YP_004808204.1|	-	1.6e-07	32.0	1.8	3.3e-07	31.0	1.8	1.5	1	0	0	1	1	1	1	Homoserine	dehydrogenase,	NAD	binding	domain
Sacchrp_dh_NADP	PF03435.18	gi|345005351|ref|YP_004808204.1|	-	0.0031	17.7	0.6	0.23	11.7	0.5	3.2	3	0	0	3	3	3	1	Saccharopine	dehydrogenase	NADP	binding	domain
Glycos_transf_1	PF00534.20	gi|345005352|ref|YP_004808205.1|	-	4e-11	42.8	0.0	6.8e-11	42.0	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.6	gi|345005352|ref|YP_004808205.1|	-	1.6e-09	38.3	0.0	3.6e-09	37.2	0.0	1.6	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_transf_4	PF13439.6	gi|345005352|ref|YP_004808205.1|	-	4.9e-08	33.2	0.6	1.3e-06	28.5	0.0	2.5	2	0	0	2	2	2	1	Glycosyltransferase	Family	4
Glyco_trans_1_2	PF13524.6	gi|345005352|ref|YP_004808205.1|	-	0.044	14.2	0.0	0.12	12.8	0.0	1.7	1	1	0	1	1	1	0	Glycosyl	transferases	group	1
DUF4282	PF14110.6	gi|345005353|ref|YP_004808206.1|	-	0.32	11.8	9.3	3.7	8.4	1.6	2.1	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4282)
ATP-synt_J	PF04911.12	gi|345005353|ref|YP_004808206.1|	-	0.63	9.7	2.4	3.6	7.2	0.2	2.3	2	0	0	2	2	2	0	ATP	synthase	j	chain
Peptidase_M20	PF01546.28	gi|345005355|ref|YP_004808208.1|	-	1.2e-27	96.9	0.7	1.7e-27	96.5	0.7	1.2	1	0	0	1	1	1	1	Peptidase	family	M20/M25/M40
M20_dimer	PF07687.14	gi|345005355|ref|YP_004808208.1|	-	2.8e-15	56.1	0.0	4.8e-15	55.4	0.0	1.4	1	0	0	1	1	1	1	Peptidase	dimerisation	domain
adh_short_C2	PF13561.6	gi|345005356|ref|YP_004808209.1|	-	6.7e-70	235.3	4.4	7.8e-70	235.1	4.4	1.0	1	0	0	1	1	1	1	Enoyl-(Acyl	carrier	protein)	reductase
adh_short	PF00106.25	gi|345005356|ref|YP_004808209.1|	-	1.8e-57	194.0	1.6	2.2e-57	193.7	1.6	1.1	1	0	0	1	1	1	1	short	chain	dehydrogenase
KR	PF08659.10	gi|345005356|ref|YP_004808209.1|	-	3.2e-09	37.0	1.0	7.1e-09	35.8	1.0	1.6	1	1	0	1	1	1	1	KR	domain
3HCDH_N	PF02737.18	gi|345005356|ref|YP_004808209.1|	-	2.2e-06	27.7	1.7	4.7e-06	26.6	1.2	1.8	2	0	0	2	2	2	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
Methyltransf_25	PF13649.6	gi|345005356|ref|YP_004808209.1|	-	0.00087	20.0	0.1	0.0015	19.2	0.1	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_11	PF08241.12	gi|345005356|ref|YP_004808209.1|	-	0.0078	16.8	0.1	0.015	15.9	0.1	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
Glyco_trans_4_4	PF13579.6	gi|345005356|ref|YP_004808209.1|	-	0.019	15.4	0.2	0.32	11.4	0.0	2.1	2	0	0	2	2	2	0	Glycosyl	transferase	4-like	domain
UDPG_MGDP_dh_N	PF03721.14	gi|345005356|ref|YP_004808209.1|	-	0.02	14.5	0.2	0.033	13.8	0.2	1.3	1	0	0	1	1	1	0	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
TrkA_N	PF02254.18	gi|345005356|ref|YP_004808209.1|	-	0.021	15.1	1.7	0.065	13.5	0.6	2.2	2	1	0	2	2	2	0	TrkA-N	domain
Epimerase	PF01370.21	gi|345005356|ref|YP_004808209.1|	-	0.029	13.9	0.4	0.038	13.4	0.4	1.4	1	1	0	1	1	1	0	NAD	dependent	epimerase/dehydratase	family
HTH_IclR	PF09339.10	gi|345005357|ref|YP_004808210.1|	-	0.00076	19.2	0.0	0.0011	18.8	0.0	1.3	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
MarR_2	PF12802.7	gi|345005357|ref|YP_004808210.1|	-	0.0023	17.8	0.0	0.0039	17.0	0.0	1.3	1	0	0	1	1	1	1	MarR	family
TrmB	PF01978.19	gi|345005357|ref|YP_004808210.1|	-	0.006	16.4	0.0	0.009	15.9	0.0	1.3	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
PadR	PF03551.14	gi|345005357|ref|YP_004808210.1|	-	0.048	13.6	0.0	0.096	12.7	0.0	1.6	1	0	0	1	1	1	0	Transcriptional	regulator	PadR-like	family
Rrf2	PF02082.20	gi|345005357|ref|YP_004808210.1|	-	0.059	13.7	0.0	0.11	12.9	0.0	1.5	1	0	0	1	1	1	0	Transcriptional	regulator
Fe_dep_repress	PF01325.19	gi|345005357|ref|YP_004808210.1|	-	0.07	13.3	0.0	0.13	12.4	0.0	1.5	1	0	0	1	1	1	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
DUF4461	PF14688.6	gi|345005357|ref|YP_004808210.1|	-	0.085	12.6	0.0	0.12	12.2	0.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4461)
AbiEi_4	PF13338.6	gi|345005357|ref|YP_004808210.1|	-	0.091	12.9	0.1	0.23	11.7	0.0	1.6	2	0	0	2	2	2	0	Transcriptional	regulator,	AbiEi	antitoxin
Aldedh	PF00171.22	gi|345005359|ref|YP_004808212.1|	-	2.2e-169	563.8	0.4	2.7e-169	563.5	0.4	1.0	1	0	0	1	1	1	1	Aldehyde	dehydrogenase	family
SBP_bac_5	PF00496.22	gi|345005360|ref|YP_004808213.1|	-	2.3e-71	240.7	0.6	2.9e-71	240.4	0.6	1.1	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	proteins,	family	5	Middle
UCR_Fe-S_N	PF10399.9	gi|345005360|ref|YP_004808213.1|	-	0.0094	15.3	0.4	0.0094	15.3	0.4	1.8	2	0	0	2	2	2	1	Ubiquitinol-cytochrome	C	reductase	Fe-S	subunit	TAT	signal
Alkyl_sulf_C	PF14864.6	gi|345005360|ref|YP_004808213.1|	-	0.015	15.5	0.0	0.032	14.5	0.0	1.4	1	0	0	1	1	1	0	Alkyl	sulfatase	C-terminal
TAT_signal	PF10518.9	gi|345005360|ref|YP_004808213.1|	-	0.1	12.5	9.2	0.28	11.1	9.2	1.8	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
BPD_transp_1	PF00528.22	gi|345005361|ref|YP_004808214.1|	-	2.4e-37	128.5	10.2	2.4e-37	128.5	10.2	2.1	2	1	0	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
BPD_transp_1	PF00528.22	gi|345005362|ref|YP_004808215.1|	-	1.4e-29	103.1	6.7	1.4e-29	103.1	6.7	1.7	2	0	0	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
OppC_N	PF12911.7	gi|345005362|ref|YP_004808215.1|	-	2.3e-08	33.9	1.1	2.3e-08	33.9	1.1	3.0	2	1	0	2	2	2	1	N-terminal	TM	domain	of	oligopeptide	transport	permease	C
ABC_tran	PF00005.27	gi|345005363|ref|YP_004808216.1|	-	4.5e-27	95.2	0.0	6.1e-27	94.8	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
oligo_HPY	PF08352.12	gi|345005363|ref|YP_004808216.1|	-	1.6e-17	63.8	0.2	3.2e-17	62.8	0.2	1.6	1	0	0	1	1	1	1	Oligopeptide/dipeptide	transporter,	C-terminal	region
AAA_21	PF13304.6	gi|345005363|ref|YP_004808216.1|	-	0.00021	21.2	0.5	0.00064	19.6	0.0	1.8	2	0	0	2	2	2	1	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|345005363|ref|YP_004808216.1|	-	0.0048	16.4	0.0	0.0072	15.8	0.0	1.2	1	0	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_22	PF13401.6	gi|345005363|ref|YP_004808216.1|	-	0.039	14.2	0.4	0.27	11.5	0.4	2.1	1	1	0	1	1	1	0	AAA	domain
AAA_16	PF13191.6	gi|345005363|ref|YP_004808216.1|	-	0.067	13.6	0.7	0.11	12.8	0.7	1.6	1	1	0	1	1	1	0	AAA	ATPase	domain
AAA_29	PF13555.6	gi|345005363|ref|YP_004808216.1|	-	0.19	11.5	0.1	0.37	10.6	0.1	1.4	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
ABC_tran	PF00005.27	gi|345005364|ref|YP_004808217.1|	-	1.2e-32	113.2	0.0	1.7e-32	112.8	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
oligo_HPY	PF08352.12	gi|345005364|ref|YP_004808217.1|	-	4.7e-17	62.3	1.1	6.4e-17	61.8	0.2	1.7	2	0	0	2	2	1	1	Oligopeptide/dipeptide	transporter,	C-terminal	region
SMC_N	PF02463.19	gi|345005364|ref|YP_004808217.1|	-	2.6e-05	23.8	0.0	5.6e-05	22.7	0.0	1.4	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_21	PF13304.6	gi|345005364|ref|YP_004808217.1|	-	0.0011	18.8	0.2	0.11	12.2	0.0	2.1	1	1	1	2	2	2	1	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
RsgA_GTPase	PF03193.16	gi|345005364|ref|YP_004808217.1|	-	0.0013	18.7	0.0	0.002	18.0	0.0	1.2	1	0	0	1	1	1	1	RsgA	GTPase
AAA_22	PF13401.6	gi|345005364|ref|YP_004808217.1|	-	0.0082	16.4	0.2	0.018	15.3	0.2	1.7	1	1	0	1	1	1	1	AAA	domain
AAA_16	PF13191.6	gi|345005364|ref|YP_004808217.1|	-	0.014	15.8	0.1	0.025	15.0	0.1	1.5	1	1	0	1	1	1	0	AAA	ATPase	domain
AAA_29	PF13555.6	gi|345005364|ref|YP_004808217.1|	-	0.02	14.6	0.1	0.033	13.9	0.1	1.3	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
MMR_HSR1	PF01926.23	gi|345005364|ref|YP_004808217.1|	-	0.033	14.2	0.0	0.084	13.0	0.0	1.7	1	1	0	1	1	1	0	50S	ribosome-binding	GTPase
ATP-synt_ab	PF00006.25	gi|345005364|ref|YP_004808217.1|	-	0.047	13.3	0.0	0.068	12.8	0.0	1.3	1	0	0	1	1	1	0	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
Septin	PF00735.18	gi|345005364|ref|YP_004808217.1|	-	0.055	12.7	0.0	0.079	12.2	0.0	1.2	1	0	0	1	1	1	0	Septin
AAA_13	PF13166.6	gi|345005364|ref|YP_004808217.1|	-	0.1	11.2	0.0	0.18	10.4	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
RNA_helicase	PF00910.22	gi|345005364|ref|YP_004808217.1|	-	0.11	12.9	0.1	0.2	12.0	0.1	1.4	1	0	0	1	1	1	0	RNA	helicase
NACHT	PF05729.12	gi|345005364|ref|YP_004808217.1|	-	0.11	12.4	0.0	0.31	10.9	0.0	1.7	1	0	0	1	1	1	0	NACHT	domain
Dynamin_N	PF00350.23	gi|345005364|ref|YP_004808217.1|	-	0.14	12.2	0.1	0.25	11.4	0.1	1.4	1	0	0	1	1	1	0	Dynamin	family
ATPase	PF06745.13	gi|345005364|ref|YP_004808217.1|	-	0.19	11.1	0.0	0.34	10.2	0.0	1.3	1	0	0	1	1	1	0	KaiC
IstB_IS21	PF01695.17	gi|345005364|ref|YP_004808217.1|	-	0.19	11.5	0.0	0.36	10.5	0.0	1.4	1	0	0	1	1	1	0	IstB-like	ATP	binding	protein
Iso_dh	PF00180.20	gi|345005365|ref|YP_004808218.1|	-	4e-88	295.9	0.0	4.8e-88	295.6	0.0	1.0	1	0	0	1	1	1	1	Isocitrate/isopropylmalate	dehydrogenase
OAM_dimer	PF16554.5	gi|345005365|ref|YP_004808218.1|	-	0.038	14.4	0.0	0.086	13.3	0.0	1.6	1	0	0	1	1	1	0	Dimerisation	domain	of	d-ornithine	4,5-aminomutase
Meth_synt_1	PF08267.12	gi|345005366|ref|YP_004808219.1|	-	7.3e-16	58.6	0.0	3.4e-15	56.4	0.0	1.8	1	1	1	2	2	2	1	Cobalamin-independent	synthase,	N-terminal	domain
Meth_synt_2	PF01717.18	gi|345005366|ref|YP_004808219.1|	-	8.1e-12	45.0	0.0	9.6e-12	44.8	0.0	1.0	1	0	0	1	1	1	1	Cobalamin-independent	synthase,	Catalytic	domain
Alpha-mann_mid	PF09261.11	gi|345005366|ref|YP_004808219.1|	-	0.17	12.0	0.0	0.6	10.3	0.0	1.9	1	0	0	1	1	1	0	Alpha	mannosidase	middle	domain
Meth_synt_2	PF01717.18	gi|345005367|ref|YP_004808220.1|	-	1.2e-54	185.7	0.0	2e-54	185.1	0.0	1.3	1	1	0	1	1	1	1	Cobalamin-independent	synthase,	Catalytic	domain
Meth_synt_1	PF08267.12	gi|345005367|ref|YP_004808220.1|	-	9e-13	48.4	0.0	1.3e-12	47.9	0.0	1.1	1	0	0	1	1	1	1	Cobalamin-independent	synthase,	N-terminal	domain
URO-D	PF01208.17	gi|345005367|ref|YP_004808220.1|	-	4.8e-07	29.2	0.0	6.7e-07	28.8	0.0	1.2	1	0	0	1	1	1	1	Uroporphyrinogen	decarboxylase	(URO-D)
IF-2B	PF01008.17	gi|345005368|ref|YP_004808221.1|	-	1.7e-75	253.8	1.2	2e-75	253.6	1.2	1.0	1	0	0	1	1	1	1	Initiation	factor	2	subunit	family
Halo_GVPC	PF05465.13	gi|345005368|ref|YP_004808221.1|	-	4.2	7.7	10.9	8.2	6.8	0.7	3.3	3	0	0	3	3	3	0	Halobacterial	gas	vesicle	protein	C	(GVPC)	repeat
Apolipoprotein	PF01442.18	gi|345005368|ref|YP_004808221.1|	-	6.4	6.6	11.6	6.5	6.6	8.1	2.5	2	1	0	2	2	2	0	Apolipoprotein	A1/A4/E	domain
PfkB	PF00294.24	gi|345005369|ref|YP_004808222.1|	-	1.6e-43	149.2	5.4	1.8e-43	149.0	5.4	1.0	1	0	0	1	1	1	1	pfkB	family	carbohydrate	kinase
BAF250_C	PF12031.8	gi|345005370|ref|YP_004808223.1|	-	0.19	11.0	0.0	0.2	10.9	0.0	1.1	1	0	0	1	1	1	0	SWI/SNF-like	complex	subunit	BAF250/Osa
NDK	PF00334.19	gi|345005371|ref|YP_004808224.1|	-	3e-53	179.5	0.0	3.4e-53	179.3	0.0	1.0	1	0	0	1	1	1	1	Nucleoside	diphosphate	kinase
Ribosomal_L24e	PF01246.20	gi|345005372|ref|YP_004808225.1|	-	7.4e-21	74.2	0.0	7.5e-21	74.1	0.0	1.0	1	0	0	1	1	1	1	Ribosomal	protein	L24e
zf-FCS	PF06467.14	gi|345005372|ref|YP_004808225.1|	-	1.6e-05	24.8	2.4	2.2e-05	24.3	2.4	1.2	1	0	0	1	1	1	1	MYM-type	Zinc	finger	with	FCS	sequence	motif
Arc_trans_TRASH	PF08394.10	gi|345005372|ref|YP_004808225.1|	-	0.0018	18.6	1.0	0.0031	17.8	1.0	1.4	1	1	0	1	1	1	1	Archaeal	TRASH	domain
SerH	PF06873.11	gi|345005372|ref|YP_004808225.1|	-	0.062	12.1	0.1	0.062	12.1	0.1	1.0	1	0	0	1	1	1	0	Cell	surface	immobilisation	antigen	SerH
YacG	PF03884.14	gi|345005372|ref|YP_004808225.1|	-	0.096	12.4	1.7	0.18	11.5	1.7	1.8	1	1	0	1	1	1	0	DNA	gyrase	inhibitor	YacG
VATC	PF18716.1	gi|345005372|ref|YP_004808225.1|	-	0.5	10.3	3.7	2.6	8.0	3.7	1.9	1	1	0	1	1	1	0	Vms1-associating	treble	clef	domain
Ribosomal_S28e	PF01200.18	gi|345005373|ref|YP_004808226.1|	-	3.4e-28	97.4	0.6	3.7e-28	97.3	0.6	1.0	1	0	0	1	1	1	1	Ribosomal	protein	S28e
RMI1_C	PF16099.5	gi|345005373|ref|YP_004808226.1|	-	0.19	11.5	0.0	0.24	11.3	0.0	1.1	1	0	0	1	1	1	0	Recq-mediated	genome	instability	protein	1,	C-terminal	OB-fold
Ribosomal_L7Ae	PF01248.26	gi|345005374|ref|YP_004808227.1|	-	9e-26	89.5	0.0	1e-25	89.3	0.0	1.1	1	0	0	1	1	1	1	Ribosomal	protein	L7Ae/L30e/S12e/Gadd45	family
PELOTA_1	PF15608.6	gi|345005374|ref|YP_004808227.1|	-	1.2e-05	25.1	0.0	1.6e-05	24.7	0.0	1.2	1	0	0	1	1	1	1	PELOTA	RNA	binding	domain
DUF1269	PF06897.12	gi|345005374|ref|YP_004808227.1|	-	0.023	15.0	2.1	0.91	9.8	0.0	2.1	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF1269)
eRF1_3	PF03465.15	gi|345005374|ref|YP_004808227.1|	-	0.056	13.9	0.1	0.13	12.7	0.1	1.6	1	1	0	1	1	1	0	eRF1	domain	3
Helicase_RecD	PF05127.14	gi|345005375|ref|YP_004808228.1|	-	2.6e-47	161.0	0.0	4.1e-47	160.3	0.0	1.3	1	0	0	1	1	1	1	Helicase
GNAT_acetyltr_2	PF13718.6	gi|345005375|ref|YP_004808228.1|	-	4e-43	147.4	0.0	1e-24	87.3	0.0	2.2	1	1	1	2	2	2	2	GNAT	acetyltransferase	2
DUF1726	PF08351.11	gi|345005375|ref|YP_004808228.1|	-	7.6e-25	86.7	0.0	8.2e-24	83.4	0.0	2.5	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF1726)
AAA_30	PF13604.6	gi|345005375|ref|YP_004808228.1|	-	5.9e-05	22.9	0.7	0.00017	21.4	0.1	2.1	2	0	0	2	2	2	1	AAA	domain
Acetyltransf_7	PF13508.7	gi|345005375|ref|YP_004808228.1|	-	0.0058	17.0	0.0	0.013	15.9	0.0	1.6	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
BTRD1	PF17660.1	gi|345005375|ref|YP_004808228.1|	-	0.011	15.6	0.0	0.029	14.2	0.0	1.7	1	0	0	1	1	1	0	Bacterial	tandem	repeat	domain	1
AAA_16	PF13191.6	gi|345005375|ref|YP_004808228.1|	-	0.055	13.9	3.6	0.59	10.5	0.8	3.3	2	1	1	3	3	3	0	AAA	ATPase	domain
Fer4	PF00037.27	gi|345005376|ref|YP_004808229.1|	-	1.3e-13	50.1	12.7	9.9e-08	31.5	3.9	2.4	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_7	PF12838.7	gi|345005376|ref|YP_004808229.1|	-	5e-13	49.4	21.8	9.8e-08	32.5	7.6	2.0	1	1	2	3	3	3	3	4Fe-4S	dicluster	domain
Fer4_6	PF12837.7	gi|345005376|ref|YP_004808229.1|	-	4.6e-09	36.0	13.9	2.3e-05	24.2	5.1	2.3	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_10	PF13237.6	gi|345005376|ref|YP_004808229.1|	-	2.4e-08	34.0	17.1	4.7e-06	26.6	7.5	2.0	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_9	PF13187.6	gi|345005376|ref|YP_004808229.1|	-	2.7e-08	33.8	5.7	6.7e-08	32.6	6.0	1.5	1	1	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_21	PF14697.6	gi|345005376|ref|YP_004808229.1|	-	4.1e-08	33.2	9.7	1.6e-07	31.3	9.8	1.8	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_16	PF13484.6	gi|345005376|ref|YP_004808229.1|	-	1.8e-06	28.8	4.4	0.00031	21.6	1.0	2.2	2	0	0	2	2	2	2	4Fe-4S	double	cluster	binding	domain
Fer4_17	PF13534.6	gi|345005376|ref|YP_004808229.1|	-	4.9e-06	27.0	2.5	0.018	15.5	0.8	2.1	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_8	PF13183.6	gi|345005376|ref|YP_004808229.1|	-	6.4e-05	23.3	6.4	0.0015	18.9	7.2	2.0	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_2	PF12797.7	gi|345005376|ref|YP_004808229.1|	-	0.0001	22.2	10.1	0.0045	17.0	2.9	2.5	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_13	PF13370.6	gi|345005376|ref|YP_004808229.1|	-	0.00032	21.2	13.8	0.0032	18.0	13.8	2.3	1	1	0	1	1	1	1	4Fe-4S	single	cluster	domain	of	Ferredoxin	I
Fer4_4	PF12800.7	gi|345005376|ref|YP_004808229.1|	-	0.00033	20.9	5.9	0.00047	20.5	1.4	2.2	2	0	0	2	2	2	1	4Fe-4S	binding	domain
Fer4_18	PF13746.6	gi|345005376|ref|YP_004808229.1|	-	0.0014	18.9	3.3	0.0014	18.9	3.3	2.1	1	1	1	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_3	PF12798.7	gi|345005376|ref|YP_004808229.1|	-	0.0016	19.3	10.2	0.0027	18.5	4.1	2.3	2	0	0	2	2	2	1	4Fe-4S	binding	domain
ETF_QO	PF05187.13	gi|345005376|ref|YP_004808229.1|	-	0.0026	17.9	0.2	0.0034	17.5	0.2	1.1	1	0	0	1	1	1	1	Electron	transfer	flavoprotein-ubiquinone	oxidoreductase,	4Fe-4S
Fer4_15	PF13459.6	gi|345005376|ref|YP_004808229.1|	-	0.45	11.3	16.6	4.2	8.2	16.6	2.8	1	1	0	1	1	1	0	4Fe-4S	single	cluster	domain
DUF456	PF04306.13	gi|345005377|ref|YP_004808230.1|	-	2.6e-22	79.6	24.2	2.6e-22	79.6	24.2	1.6	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF456)
ResB	PF05140.14	gi|345005377|ref|YP_004808230.1|	-	0.03	13.1	0.5	0.03	13.1	0.5	1.9	2	0	0	2	2	2	0	ResB-like	family
AFOR_C	PF01314.18	gi|345005378|ref|YP_004808231.1|	-	1.5e-79	267.8	0.5	2.7e-79	267.0	0.5	1.3	1	0	0	1	1	1	1	Aldehyde	ferredoxin	oxidoreductase,	domains	2	&	3
AFOR_N	PF02730.15	gi|345005378|ref|YP_004808231.1|	-	6.8e-57	192.5	0.0	9.7e-57	192.0	0.0	1.2	1	0	0	1	1	1	1	Aldehyde	ferredoxin	oxidoreductase,	N-terminal	domain
Amidase	PF01425.21	gi|345005379|ref|YP_004808232.1|	-	5.3e-92	309.1	0.3	5.7e-92	309.0	0.3	1.0	1	0	0	1	1	1	1	Amidase
DUF4936	PF16290.5	gi|345005380|ref|YP_004808233.1|	-	0.002	18.8	0.0	0.0023	18.6	0.0	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4936)
YdjM	PF04307.14	gi|345005381|ref|YP_004808234.1|	-	2.8e-13	49.5	25.5	5e-12	45.5	25.5	2.7	1	1	0	1	1	1	1	LexA-binding,	inner	membrane-associated	putative	hydrolase
TctA	PF01970.16	gi|345005382|ref|YP_004808235.1|	-	4.6e-53	180.4	45.6	5.6e-53	180.1	45.6	1.1	1	0	0	1	1	1	1	Tripartite	tricarboxylate	transporter	TctA	family
Usp	PF00582.26	gi|345005383|ref|YP_004808236.1|	-	7.9e-11	42.6	1.6	3.6e-10	40.5	1.6	1.8	1	1	0	1	1	1	1	Universal	stress	protein	family
5_nucleotid_C	PF02872.18	gi|345005384|ref|YP_004808237.1|	-	7.3e-30	104.3	0.0	1.3e-29	103.4	0.0	1.4	1	0	0	1	1	1	1	5'-nucleotidase,	C-terminal	domain
Metallophos	PF00149.28	gi|345005384|ref|YP_004808237.1|	-	7.4e-07	29.9	0.0	1.4e-06	29.0	0.0	1.4	1	0	0	1	1	1	1	Calcineurin-like	phosphoesterase
Dodecin	PF07311.12	gi|345005385|ref|YP_004808238.1|	-	3.2e-21	75.4	0.2	3.5e-21	75.2	0.2	1.0	1	0	0	1	1	1	1	Dodecin
EF1_GNE	PF00736.19	gi|345005386|ref|YP_004808239.1|	-	6.2e-19	68.0	0.0	6.8e-19	67.8	0.0	1.0	1	0	0	1	1	1	1	EF-1	guanine	nucleotide	exchange	domain
DUF1610	PF07754.11	gi|345005387|ref|YP_004808240.1|	-	2.6e-05	24.1	1.7	2.6e-05	24.1	1.7	2.9	2	1	1	3	3	3	1	Domain	of	unknown	function	(DUF1610)
C1_2	PF03107.16	gi|345005387|ref|YP_004808240.1|	-	0.00025	21.3	8.4	0.065	13.6	0.1	2.1	1	1	1	2	2	2	2	C1	domain
zf-Mss51	PF13824.6	gi|345005387|ref|YP_004808240.1|	-	0.00035	20.6	11.3	0.26	11.4	1.6	3.2	1	1	2	3	3	3	2	Zinc-finger	of	mitochondrial	splicing	suppressor	51
Rhodanese_C	PF12368.8	gi|345005387|ref|YP_004808240.1|	-	0.0029	17.9	6.2	0.0033	17.8	6.2	1.1	1	0	0	1	1	1	1	Rhodanase	C-terminal
zf-ribbon_3	PF13248.6	gi|345005387|ref|YP_004808240.1|	-	0.007	15.7	12.3	0.87	9.1	0.1	4.0	4	0	0	4	4	4	1	zinc-ribbon	domain
Zn_Tnp_IS91	PF14319.6	gi|345005387|ref|YP_004808240.1|	-	0.013	15.5	5.9	0.021	14.8	5.9	1.4	1	0	0	1	1	1	0	Transposase	zinc-binding	domain
NMDAR2_C	PF10565.9	gi|345005387|ref|YP_004808240.1|	-	0.015	14.2	3.6	0.016	14.1	3.6	1.0	1	0	0	1	1	1	0	N-methyl	D-aspartate	receptor	2B3	C-terminus
zf-CHY	PF05495.12	gi|345005387|ref|YP_004808240.1|	-	0.017	15.6	10.6	0.12	12.8	6.2	2.1	1	1	1	2	2	2	0	CHY	zinc	finger
C1_1	PF00130.22	gi|345005387|ref|YP_004808240.1|	-	0.031	14.2	0.6	0.031	14.2	0.6	2.3	1	1	1	2	2	2	0	Phorbol	esters/diacylglycerol	binding	domain	(C1	domain)
PolC_DP2	PF03833.13	gi|345005387|ref|YP_004808240.1|	-	0.031	12.2	5.1	0.034	12.0	5.1	1.0	1	0	0	1	1	1	0	DNA	polymerase	II	large	subunit	DP2
zf-ACC	PF17848.1	gi|345005387|ref|YP_004808240.1|	-	0.054	13.6	0.2	0.054	13.6	0.2	3.7	3	1	0	3	3	3	0	Acetyl-coA	carboxylase	zinc	finger	domain
FYVE_2	PF02318.16	gi|345005387|ref|YP_004808240.1|	-	0.058	13.6	4.1	0.063	13.5	4.1	1.1	1	0	0	1	1	1	0	FYVE-type	zinc	finger
OrfB_Zn_ribbon	PF07282.11	gi|345005387|ref|YP_004808240.1|	-	0.089	12.7	11.3	0.11	12.4	1.5	2.4	1	1	1	2	2	2	0	Putative	transposase	DNA-binding	domain
zf-MYND	PF01753.18	gi|345005387|ref|YP_004808240.1|	-	0.13	12.4	7.3	1.3	9.2	3.9	2.3	1	1	1	2	2	2	0	MYND	finger
Rubredoxin_2	PF18073.1	gi|345005387|ref|YP_004808240.1|	-	0.14	11.9	13.5	5	6.9	0.2	4.1	4	0	0	4	4	4	0	Rubredoxin	metal	binding	domain
HscB_4_cys	PF18256.1	gi|345005387|ref|YP_004808240.1|	-	0.16	11.8	1.0	0.16	11.8	1.0	3.0	2	1	1	3	3	3	0	Co-chaperone	HscB	tetracysteine	metal	binding	motif
DNA_RNApol_7kD	PF03604.13	gi|345005387|ref|YP_004808240.1|	-	0.18	11.5	11.8	0.19	11.4	0.9	3.0	1	1	1	2	2	2	0	DNA	directed	RNA	polymerase,	7	kDa	subunit
A2L_zn_ribbon	PF08792.10	gi|345005387|ref|YP_004808240.1|	-	0.39	10.5	11.2	22	4.9	0.1	3.9	3	1	0	3	3	3	0	A2L	zinc	ribbon	domain
zf-HIT	PF04438.16	gi|345005387|ref|YP_004808240.1|	-	0.41	10.5	14.9	1.7	8.6	2.4	2.9	2	2	0	2	2	2	0	HIT	zinc	finger
zf-RING_5	PF14634.6	gi|345005387|ref|YP_004808240.1|	-	0.44	10.6	10.2	2.3	8.3	0.9	2.4	2	1	0	2	2	2	0	zinc-RING	finger	domain
zinc_ribbon_2	PF13240.6	gi|345005387|ref|YP_004808240.1|	-	0.47	10.2	15.1	1.1	9.1	2.2	3.7	2	2	0	2	2	2	0	zinc-ribbon	domain
Zn-ribbon_8	PF09723.10	gi|345005387|ref|YP_004808240.1|	-	0.53	10.4	16.9	4.6	7.5	11.5	3.4	1	1	2	3	3	3	0	Zinc	ribbon	domain
zinc-ribbons_6	PF07191.12	gi|345005387|ref|YP_004808240.1|	-	0.76	9.8	11.2	21	5.2	9.9	2.1	1	1	0	1	1	1	0	zinc-ribbons
zinc_ribbon_4	PF13717.6	gi|345005387|ref|YP_004808240.1|	-	0.87	9.6	0.2	0.87	9.6	0.2	3.9	2	1	1	4	4	4	0	zinc-ribbon	domain
Auto_anti-p27	PF06677.12	gi|345005387|ref|YP_004808240.1|	-	1.1	9.5	12.5	20	5.5	8.9	3.0	2	1	0	2	2	2	0	Sjogren's	syndrome/scleroderma	autoantigen	1	(Autoantigen	p27)
UPF0547	PF10571.9	gi|345005387|ref|YP_004808240.1|	-	1.1	9.4	13.7	1.4	9.1	0.2	3.4	4	0	0	4	4	4	0	Uncharacterised	protein	family	UPF0547
zinc_ribbon_10	PF10058.9	gi|345005387|ref|YP_004808240.1|	-	1.2	8.9	12.3	5.4	6.8	1.2	3.5	1	1	3	4	4	4	0	Predicted	integral	membrane	zinc-ribbon	metal-binding	protein
NMD3	PF04981.13	gi|345005387|ref|YP_004808240.1|	-	1.2	8.5	9.2	1.6	8.1	9.2	1.1	1	0	0	1	1	1	0	NMD3	family
zf-C2H2	PF00096.26	gi|345005387|ref|YP_004808240.1|	-	1.6	9.4	16.4	4	8.1	0.3	4.0	4	0	0	4	4	4	0	Zinc	finger,	C2H2	type
DUF35_N	PF12172.8	gi|345005387|ref|YP_004808240.1|	-	2.9	7.8	15.3	1.4	8.9	5.0	3.6	3	1	0	3	3	3	0	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
zf_UBZ	PF18439.1	gi|345005387|ref|YP_004808240.1|	-	3.1	7.5	15.2	2.8	7.6	0.1	3.8	3	1	1	4	4	4	0	Ubiquitin-Binding	Zinc	Finger
zf-tcix	PF14952.6	gi|345005387|ref|YP_004808240.1|	-	4	7.1	15.9	24	4.6	0.1	3.7	2	1	1	3	3	3	0	Putative	treble-clef,	zinc-finger,	Zn-binding
Zn_Tnp_IS1595	PF12760.7	gi|345005387|ref|YP_004808240.1|	-	4	7.5	18.6	12	6.0	4.0	3.7	2	1	2	4	4	4	0	Transposase	zinc-ribbon	domain
Nudix_N_2	PF14803.6	gi|345005387|ref|YP_004808240.1|	-	4.8	7.2	14.3	0.92	9.5	2.5	3.7	2	1	2	4	4	4	0	Nudix	N-terminal
zf-H2C2_2	PF13465.6	gi|345005387|ref|YP_004808240.1|	-	7.2	7.2	17.6	6	7.5	0.5	3.5	2	1	2	4	4	3	0	Zinc-finger	double	domain
TFIIS_C	PF01096.18	gi|345005387|ref|YP_004808240.1|	-	7.5	6.5	15.8	5.9	6.8	0.6	4.0	2	1	2	4	4	4	0	Transcription	factor	S-II	(TFIIS)
zf-AN1	PF01428.16	gi|345005387|ref|YP_004808240.1|	-	9.8	6.4	12.4	18	5.6	1.3	2.7	1	1	2	3	3	3	0	AN1-like	Zinc	finger
DsbD_2	PF13386.6	gi|345005388|ref|YP_004808241.1|	-	1.6	8.6	11.9	0.073	13.0	2.3	2.2	2	0	0	2	2	2	0	Cytochrome	C	biogenesis	protein	transmembrane	region
DUF2238	PF09997.9	gi|345005389|ref|YP_004808242.1|	-	0.00056	19.7	4.0	0.0012	18.6	4.0	1.7	1	1	0	1	1	1	1	Predicted	membrane	protein	(DUF2238)
Ribosomal_L11	PF00298.19	gi|345005390|ref|YP_004808243.1|	-	1.5e-18	67.0	0.0	2.2e-18	66.5	0.0	1.3	1	0	0	1	1	1	1	Ribosomal	protein	L11,	RNA	binding	domain
Ribosomal_L11_N	PF03946.14	gi|345005390|ref|YP_004808243.1|	-	8e-18	64.0	0.1	2.2e-17	62.6	0.0	1.8	2	0	0	2	2	2	1	Ribosomal	protein	L11,	N-terminal	domain
CRCB	PF02537.15	gi|345005391|ref|YP_004808244.1|	-	6.6e-15	55.2	11.7	8e-15	54.9	11.7	1.1	1	0	0	1	1	1	1	CrcB-like	protein,	Camphor	Resistance	(CrcB)
CRCB	PF02537.15	gi|345005392|ref|YP_004808245.1|	-	2.3e-20	72.7	9.3	2.7e-20	72.5	9.3	1.1	1	0	0	1	1	1	1	CrcB-like	protein,	Camphor	Resistance	(CrcB)
Peptidase_M42	PF05343.14	gi|345005393|ref|YP_004808246.1|	-	3.1e-80	269.3	3.4	3.6e-80	269.1	3.4	1.0	1	0	0	1	1	1	1	M42	glutamyl	aminopeptidase
Peptidase_M18	PF02127.15	gi|345005393|ref|YP_004808246.1|	-	0.016	14.1	0.1	6.6	5.4	0.0	2.8	2	1	0	2	2	2	0	Aminopeptidase	I	zinc	metalloprotease	(M18)
Zincin_2	PF10103.9	gi|345005395|ref|YP_004808248.1|	-	3.3e-65	220.5	0.9	9.9e-33	113.8	0.0	2.0	1	1	1	2	2	2	2	Zincin-like	metallopeptidase
Pyr_redox_2	PF07992.14	gi|345005396|ref|YP_004808249.1|	-	7.3e-52	176.4	0.3	9.4e-52	176.1	0.3	1.1	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox	PF00070.27	gi|345005396|ref|YP_004808249.1|	-	5e-21	75.0	0.1	3.9e-17	62.6	0.1	3.5	3	0	0	3	3	3	1	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_binding_8	PF13450.6	gi|345005396|ref|YP_004808249.1|	-	2e-07	31.1	0.5	0.02	15.1	0.0	3.3	3	0	0	3	3	3	2	NAD(P)-binding	Rossmann-like	domain
Pyr_redox_dim	PF02852.22	gi|345005396|ref|YP_004808249.1|	-	4.5e-07	30.1	0.0	2.2e-06	27.9	0.0	2.0	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase,	dimerisation	domain
Pyr_redox_3	PF13738.6	gi|345005396|ref|YP_004808249.1|	-	1.7e-06	27.5	0.0	0.032	13.5	0.0	3.0	2	2	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
HI0933_like	PF03486.14	gi|345005396|ref|YP_004808249.1|	-	6.3e-06	25.2	0.0	0.99	8.0	0.0	3.9	4	0	0	4	4	4	2	HI0933-like	protein
Amino_oxidase	PF01593.24	gi|345005396|ref|YP_004808249.1|	-	0.00067	19.1	0.0	1.8	7.8	0.0	3.0	3	0	0	3	3	3	2	Flavin	containing	amine	oxidoreductase
3HCDH_N	PF02737.18	gi|345005396|ref|YP_004808249.1|	-	0.013	15.3	0.1	0.021	14.7	0.1	1.3	1	0	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
Thi4	PF01946.17	gi|345005396|ref|YP_004808249.1|	-	0.073	12.3	0.0	0.37	10.0	0.0	2.1	2	0	0	2	2	2	0	Thi4	family
GIDA	PF01134.22	gi|345005396|ref|YP_004808249.1|	-	0.1	11.6	0.2	0.35	9.9	0.1	1.8	2	0	0	2	2	2	0	Glucose	inhibited	division	protein	A
Lycopene_cycl	PF05834.12	gi|345005396|ref|YP_004808249.1|	-	0.11	11.5	0.1	7	5.6	0.1	2.3	2	0	0	2	2	2	0	Lycopene	cyclase	protein
DUF1097	PF06496.11	gi|345005397|ref|YP_004808250.1|	-	1.3e-29	103.2	20.2	1.5e-29	103.0	20.2	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1097)
PigN	PF04987.14	gi|345005397|ref|YP_004808250.1|	-	0.086	11.7	1.2	0.099	11.5	1.2	1.2	1	1	0	1	1	1	0	Phosphatidylinositolglycan	class	N	(PIG-N)
BTP	PF05232.12	gi|345005397|ref|YP_004808250.1|	-	0.26	11.4	0.2	0.26	11.4	0.2	3.0	3	0	0	3	3	3	0	Chlorhexidine	efflux	transporter
DUF3487	PF11990.8	gi|345005399|ref|YP_004808252.1|	-	8.6e-05	22.4	0.1	0.0001	22.2	0.1	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3487)
LapA_dom	PF06305.11	gi|345005399|ref|YP_004808252.1|	-	0.014	15.2	3.8	0.014	15.2	3.8	1.7	1	1	1	2	2	2	0	Lipopolysaccharide	assembly	protein	A	domain
DUF4229	PF14012.6	gi|345005399|ref|YP_004808252.1|	-	0.019	15.1	1.1	0.027	14.6	1.1	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF4229)
HemY_N	PF07219.13	gi|345005399|ref|YP_004808252.1|	-	0.022	14.9	1.6	0.026	14.7	1.0	1.4	1	1	0	1	1	1	0	HemY	protein	N-terminus
DUF368	PF04018.13	gi|345005399|ref|YP_004808252.1|	-	0.033	13.8	0.1	0.036	13.6	0.1	1.0	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF368)
TcdA_TcdB_pore	PF12920.7	gi|345005399|ref|YP_004808252.1|	-	0.039	12.2	0.6	0.045	12.0	0.6	1.0	1	0	0	1	1	1	0	TcdA/TcdB	pore	forming	domain
Tail_VII	PF17091.5	gi|345005399|ref|YP_004808252.1|	-	0.055	13.4	1.5	0.12	12.3	1.5	1.6	1	0	0	1	1	1	0	Inovirus	G7P	protein
DUF2207	PF09972.9	gi|345005399|ref|YP_004808252.1|	-	0.062	12.1	0.0	0.073	11.8	0.0	1.0	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2207)
FtsX	PF02687.21	gi|345005399|ref|YP_004808252.1|	-	0.062	13.8	1.2	0.13	12.8	1.3	1.4	1	1	0	1	1	1	0	FtsX-like	permease	family
BT1	PF03092.16	gi|345005399|ref|YP_004808252.1|	-	0.11	10.7	0.2	0.12	10.6	0.2	1.0	1	0	0	1	1	1	0	BT1	family
Antibiotic_NAT	PF02522.14	gi|345005400|ref|YP_004808253.1|	-	8.6e-76	254.6	0.0	1e-75	254.4	0.0	1.0	1	0	0	1	1	1	1	Aminoglycoside	3-N-acetyltransferase
AAA_12	PF13087.6	gi|345005401|ref|YP_004808254.1|	-	3.4e-40	137.8	0.0	5.3e-40	137.2	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
AAA_11	PF13086.6	gi|345005401|ref|YP_004808254.1|	-	5.9e-36	124.6	0.4	1e-18	68.1	0.1	2.9	2	1	1	3	3	3	2	AAA	domain
Dna2	PF08696.11	gi|345005401|ref|YP_004808254.1|	-	8.6e-19	68.1	0.0	5.1e-17	62.4	0.0	2.2	1	1	0	1	1	1	1	DNA	replication	factor	Dna2
AAA_30	PF13604.6	gi|345005401|ref|YP_004808254.1|	-	7.2e-16	58.5	7.1	1.3e-15	57.6	3.0	3.1	2	2	0	2	2	2	1	AAA	domain
AAA_19	PF13245.6	gi|345005401|ref|YP_004808254.1|	-	1.2e-15	58.1	0.2	1.4e-14	54.6	0.0	2.6	2	1	0	2	2	2	1	AAA	domain
PDDEXK_1	PF12705.7	gi|345005401|ref|YP_004808254.1|	-	6.9e-11	42.5	0.2	1.9e-10	41.1	0.0	1.8	2	0	0	2	2	2	1	PD-(D/E)XK	nuclease	superfamily
Viral_helicase1	PF01443.18	gi|345005401|ref|YP_004808254.1|	-	2.4e-10	40.6	0.0	0.016	14.9	0.0	3.3	3	0	0	3	3	3	3	Viral	(Superfamily	1)	RNA	helicase
UvrD-helicase	PF00580.21	gi|345005401|ref|YP_004808254.1|	-	2.2e-06	27.5	0.2	1.4e-05	24.8	0.1	1.9	1	1	0	2	2	2	1	UvrD/REP	helicase	N-terminal	domain
Cas_Cas4	PF01930.17	gi|345005401|ref|YP_004808254.1|	-	7.3e-06	26.2	0.0	4.7e-05	23.6	0.0	2.2	2	1	0	2	2	2	1	Domain	of	unknown	function	DUF83
AAA_22	PF13401.6	gi|345005401|ref|YP_004808254.1|	-	4.1e-05	23.9	0.1	0.0004	20.7	0.0	2.6	3	1	0	3	3	2	1	AAA	domain
AAA_16	PF13191.6	gi|345005401|ref|YP_004808254.1|	-	6.4e-05	23.4	0.6	0.00036	21.0	0.1	2.4	2	0	0	2	2	2	1	AAA	ATPase	domain
ResIII	PF04851.15	gi|345005401|ref|YP_004808254.1|	-	7e-05	22.9	0.0	0.00014	21.9	0.0	1.5	1	0	0	1	1	1	1	Type	III	restriction	enzyme,	res	subunit
DUF2075	PF09848.9	gi|345005401|ref|YP_004808254.1|	-	0.0016	17.7	0.1	0.0062	15.8	0.0	2.0	2	1	0	2	2	2	1	Uncharacterized	conserved	protein	(DUF2075)
UvrD_C_2	PF13538.6	gi|345005401|ref|YP_004808254.1|	-	0.0026	17.5	0.0	0.0069	16.2	0.0	1.8	1	0	0	1	1	1	1	UvrD-like	helicase	C-terminal	domain
Helicase_RecD	PF05127.14	gi|345005401|ref|YP_004808254.1|	-	0.0031	17.4	1.4	0.0075	16.1	0.4	2.2	2	1	0	2	2	2	1	Helicase
AAA	PF00004.29	gi|345005401|ref|YP_004808254.1|	-	0.014	15.8	0.0	0.039	14.4	0.0	1.8	1	0	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
IstB_IS21	PF01695.17	gi|345005401|ref|YP_004808254.1|	-	0.04	13.6	0.0	0.15	11.8	0.0	1.9	2	0	0	2	2	2	0	IstB-like	ATP	binding	protein
PhoH	PF02562.16	gi|345005401|ref|YP_004808254.1|	-	0.044	13.2	0.0	0.15	11.5	0.0	1.8	2	0	0	2	2	2	0	PhoH-like	protein
AAA_7	PF12775.7	gi|345005401|ref|YP_004808254.1|	-	0.065	12.7	0.0	0.11	12.0	0.0	1.3	1	0	0	1	1	1	0	P-loop	containing	dynein	motor	region
SRP54	PF00448.22	gi|345005401|ref|YP_004808254.1|	-	0.082	12.5	0.0	0.26	10.9	0.0	1.8	2	0	0	2	2	2	0	SRP54-type	protein,	GTPase	domain
Mg_chelatase	PF01078.21	gi|345005401|ref|YP_004808254.1|	-	0.09	12.1	0.0	0.15	11.4	0.0	1.3	1	0	0	1	1	1	0	Magnesium	chelatase,	subunit	ChlI
AAA_33	PF13671.6	gi|345005401|ref|YP_004808254.1|	-	0.097	12.8	0.2	0.45	10.7	0.0	2.2	2	0	0	2	2	2	0	AAA	domain
YflT	PF11181.8	gi|345005401|ref|YP_004808254.1|	-	0.1	13.1	0.0	0.31	11.6	0.0	1.8	1	0	0	1	1	1	0	Heat	induced	stress	protein	YflT
PIF1	PF05970.14	gi|345005401|ref|YP_004808254.1|	-	0.11	11.6	0.0	1.3	8.1	0.0	2.0	2	0	0	2	2	2	0	PIF1-like	helicase
NTP_transferase	PF00483.23	gi|345005402|ref|YP_004808255.1|	-	3.1e-42	144.9	0.0	4e-42	144.5	0.0	1.1	1	0	0	1	1	1	1	Nucleotidyl	transferase
NTP_transf_3	PF12804.7	gi|345005402|ref|YP_004808255.1|	-	1.6e-20	74.1	0.0	2.3e-20	73.6	0.0	1.4	1	0	0	1	1	1	1	MobA-like	NTP	transferase	domain
Hexapep	PF00132.24	gi|345005402|ref|YP_004808255.1|	-	7.5e-13	47.7	27.6	0.00013	21.6	1.8	4.8	2	1	2	4	4	4	4	Bacterial	transferase	hexapeptide	(six	repeats)
IspD	PF01128.19	gi|345005402|ref|YP_004808255.1|	-	1.1e-08	35.2	0.1	2.4e-08	34.0	0.1	1.6	1	0	0	1	1	1	1	2-C-methyl-D-erythritol	4-phosphate	cytidylyltransferase
Hexapep_2	PF14602.6	gi|345005402|ref|YP_004808255.1|	-	0.00096	18.9	28.2	0.016	14.9	2.7	4.6	3	1	0	4	4	4	2	Hexapeptide	repeat	of	succinyl-transferase
Fucokinase	PF07959.12	gi|345005402|ref|YP_004808255.1|	-	0.11	11.5	0.1	0.18	10.7	0.1	1.3	1	0	0	1	1	1	0	L-fucokinase
DUF4954	PF16314.5	gi|345005402|ref|YP_004808255.1|	-	0.92	7.6	5.2	0.5	8.4	3.1	1.5	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4954)
SIS	PF01380.22	gi|345005403|ref|YP_004808256.1|	-	3.8e-38	130.3	0.4	1.2e-21	76.9	0.4	2.5	2	0	0	2	2	2	2	SIS	domain
GATase_6	PF13522.6	gi|345005403|ref|YP_004808256.1|	-	6.9e-19	68.4	0.3	1.8e-18	67.0	0.1	1.8	2	0	0	2	2	2	1	Glutamine	amidotransferase	domain
GATase_7	PF13537.6	gi|345005403|ref|YP_004808256.1|	-	2.8e-14	53.1	0.0	4.7e-14	52.4	0.0	1.4	1	0	0	1	1	1	1	Glutamine	amidotransferase	domain
UPF0175	PF03683.13	gi|345005404|ref|YP_004808257.1|	-	6.4e-17	61.0	0.0	8e-17	60.7	0.0	1.1	1	0	0	1	1	1	1	Uncharacterised	protein	family	(UPF0175)
PIN_4	PF13638.6	gi|345005405|ref|YP_004808258.1|	-	0.2	12.0	0.0	0.2	11.9	0.0	1.1	1	0	0	1	1	1	0	PIN	domain
Y1_Tnp	PF01797.16	gi|345005406|ref|YP_004808259.1|	-	1.1e-30	106.2	0.0	2.8e-28	98.5	0.0	2.0	2	0	0	2	2	2	2	Transposase	IS200	like
OrfB_IS605	PF01385.19	gi|345005407|ref|YP_004808260.1|	-	1.8e-29	102.4	0.1	3.7e-29	101.4	0.1	1.5	1	0	0	1	1	1	1	Probable	transposase
OrfB_Zn_ribbon	PF07282.11	gi|345005407|ref|YP_004808260.1|	-	1.2e-15	57.1	1.0	1.2e-15	57.1	1.0	1.8	2	0	0	2	2	2	1	Putative	transposase	DNA-binding	domain
Bac_transf	PF02397.16	gi|345005408|ref|YP_004808261.1|	-	1.7e-56	190.7	0.0	2.7e-56	190.1	0.0	1.2	1	0	0	1	1	1	1	Bacterial	sugar	transferase
DUF1970	PF09301.10	gi|345005408|ref|YP_004808261.1|	-	1e-14	54.7	0.1	1.8e-14	53.9	0.1	1.4	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1970)
OrfB_Zn_ribbon	PF07282.11	gi|345005409|ref|YP_004808262.1|	-	1.9e-17	62.9	0.3	3.7e-17	62.0	0.3	1.5	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
OrfB_IS605	PF01385.19	gi|345005409|ref|YP_004808262.1|	-	7.8e-17	61.6	0.1	1.8e-16	60.5	0.1	1.6	1	0	0	1	1	1	1	Probable	transposase
HTH_OrfB_IS605	PF12323.8	gi|345005409|ref|YP_004808262.1|	-	1.7e-05	24.2	0.3	4.9e-05	22.7	0.1	1.8	2	0	0	2	2	2	1	Helix-turn-helix	domain
DDE_Tnp_1_2	PF13586.6	gi|345005409|ref|YP_004808262.1|	-	0.049	14.0	0.4	0.16	12.3	0.4	1.9	1	1	0	1	1	1	0	Transposase	DDE	domain
DZR	PF12773.7	gi|345005409|ref|YP_004808262.1|	-	0.05	13.6	1.4	0.086	12.9	1.4	1.4	1	0	0	1	1	1	0	Double	zinc	ribbon
Zn_Tnp_IS91	PF14319.6	gi|345005409|ref|YP_004808262.1|	-	0.064	13.3	1.4	0.2	11.7	1.4	1.8	1	0	0	1	1	1	0	Transposase	zinc-binding	domain
zf-ribbon_3	PF13248.6	gi|345005409|ref|YP_004808262.1|	-	0.1	12.1	1.9	3.1	7.4	0.1	2.3	2	0	0	2	2	2	0	zinc-ribbon	domain
Rubredoxin_2	PF18073.1	gi|345005409|ref|YP_004808262.1|	-	0.36	10.6	3.9	0.93	9.3	3.9	1.7	1	1	0	1	1	1	0	Rubredoxin	metal	binding	domain
Snf7	PF03357.21	gi|345005409|ref|YP_004808262.1|	-	0.41	10.2	2.0	7.2	6.2	2.4	2.1	2	0	0	2	2	2	0	Snf7
NTP_transferase	PF00483.23	gi|345005410|ref|YP_004808263.1|	-	3.2e-44	151.4	0.0	3.9e-44	151.1	0.0	1.0	1	0	0	1	1	1	1	Nucleotidyl	transferase
NTP_transf_3	PF12804.7	gi|345005410|ref|YP_004808263.1|	-	5.8e-14	52.7	0.0	6.7e-14	52.5	0.0	1.1	1	0	0	1	1	1	1	MobA-like	NTP	transferase	domain
IspD	PF01128.19	gi|345005410|ref|YP_004808263.1|	-	1.3e-05	25.1	0.0	6.9e-05	22.7	0.0	2.0	1	1	0	1	1	1	1	2-C-methyl-D-erythritol	4-phosphate	cytidylyltransferase
CARDB	PF07705.11	gi|345005411|ref|YP_004808264.1|	-	1.7e-46	156.6	66.4	7.3e-08	32.6	0.8	10.5	7	3	3	10	10	10	10	CARDB
DUF756	PF05506.12	gi|345005411|ref|YP_004808264.1|	-	1.3e-10	42.0	24.7	0.072	14.0	0.1	11.1	8	4	2	11	11	11	2	Domain	of	unknown	function	(DUF756)
Transglut_C	PF00927.22	gi|345005411|ref|YP_004808264.1|	-	2.4e-07	30.8	0.4	16	5.7	0.0	7.9	8	0	0	8	8	8	0	Transglutaminase	family,	C-terminal	ig	like	domain
bMG6	PF17962.1	gi|345005411|ref|YP_004808264.1|	-	9.2e-07	29.0	18.8	6.6	6.9	0.2	9.1	10	0	0	10	10	8	1	Bacterial	macroglobulin	domain	6
DUF1573	PF07610.11	gi|345005411|ref|YP_004808264.1|	-	4.8e-06	26.5	18.7	0.53	10.3	0.2	9.3	10	0	0	10	10	10	1	Protein	of	unknown	function	(DUF1573)
Cupredoxin_1	PF13473.6	gi|345005411|ref|YP_004808264.1|	-	8.6e-05	22.6	18.1	9.3	6.4	0.0	9.1	7	3	4	11	11	11	0	Cupredoxin-like	domain
Fn3-like	PF14310.6	gi|345005411|ref|YP_004808264.1|	-	0.0001	22.4	18.0	3.2	7.9	0.0	10.5	10	1	1	11	11	11	1	Fibronectin	type	III-like	domain
ASH	PF15780.5	gi|345005411|ref|YP_004808264.1|	-	0.0014	18.8	0.2	0.0014	18.8	0.2	10.0	7	3	3	10	10	10	1	Abnormal	spindle-like	microcephaly-assoc'd,	ASPM-SPD-2-Hydin
4HBT	PF03061.22	gi|345005411|ref|YP_004808264.1|	-	0.004	17.5	16.6	6.9	7.1	0.2	6.9	7	0	0	7	7	6	1	Thioesterase	superfamily
Filamin	PF00630.19	gi|345005411|ref|YP_004808264.1|	-	0.0067	17.2	18.2	0.51	11.2	3.8	7.3	4	3	0	4	4	4	1	Filamin/ABP280	repeat
fn3_6	PF17766.1	gi|345005411|ref|YP_004808264.1|	-	0.0075	16.4	30.1	0.5	10.6	0.2	8.9	3	1	6	9	9	8	2	Fibronectin	type-III	domain
DUF3416	PF11896.8	gi|345005411|ref|YP_004808264.1|	-	0.012	15.9	15.1	5.2	7.3	0.6	6.0	6	1	0	6	6	6	0	Domain	of	unknown	function	(DUF3416)
DUF3244	PF11589.8	gi|345005411|ref|YP_004808264.1|	-	0.039	14.0	9.1	28	4.9	0.4	7.9	8	2	2	10	10	10	0	Domain	of	unknown	function	(DUF3244)
Y_Y_Y	PF07495.13	gi|345005411|ref|YP_004808264.1|	-	0.045	13.7	0.0	0.91	9.5	0.0	3.2	3	0	0	3	3	3	0	Y_Y_Y	domain
NifZ	PF04319.13	gi|345005411|ref|YP_004808264.1|	-	0.07	12.9	10.4	10	6.0	0.1	6.0	6	0	0	6	6	5	0	NifZ	domain
PGF-CTERM	PF18204.1	gi|345005411|ref|YP_004808264.1|	-	0.11	12.5	6.4	0.35	10.9	6.4	1.9	1	0	0	1	1	1	0	PGF-CTERM	motif
SoxE	PF06525.11	gi|345005411|ref|YP_004808264.1|	-	0.21	11.1	1.7	34	3.9	0.1	4.6	4	2	1	6	6	6	0	Sulfocyanin	(SoxE)	domain
YjzC	PF14168.6	gi|345005411|ref|YP_004808264.1|	-	0.34	11.3	2.5	26	5.3	0.0	4.2	4	0	0	4	4	3	0	YjzC-like	protein
SpuA_C	PF18033.1	gi|345005411|ref|YP_004808264.1|	-	1	9.4	11.3	65	3.7	0.0	7.0	8	0	0	8	8	8	0	SpuA	C-terminal
Ig_GlcNase	PF18368.1	gi|345005411|ref|YP_004808264.1|	-	3.2	7.9	17.2	3.5	7.8	0.0	7.4	9	2	0	9	9	7	0	Exo-beta-D-glucosaminidase	Ig-fold	domain
STT3	PF02516.14	gi|345005413|ref|YP_004808266.1|	-	0.063	12.2	6.0	0.064	12.2	6.0	1.2	1	0	0	1	1	1	0	Oligosaccharyl	transferase	STT3	subunit
AglB_L1	PF18079.1	gi|345005415|ref|YP_004808268.1|	-	0.00068	19.9	3.3	0.00068	19.9	3.3	2.3	2	1	0	2	2	2	1	Archaeal	glycosylation	protein	B	long	peripheral	domain
CarboxypepD_reg	PF13620.6	gi|345005415|ref|YP_004808268.1|	-	0.89	9.9	13.8	0.31	11.4	7.5	2.7	1	1	1	2	2	2	0	Carboxypeptidase	regulatory-like	domain
Amidase	PF01425.21	gi|345005416|ref|YP_004808269.1|	-	1.2e-08	34.4	0.1	0.00058	18.9	0.0	2.1	1	1	1	2	2	2	2	Amidase
DUF2080	PF09853.9	gi|345005418|ref|YP_004808271.1|	-	0.0054	16.5	0.0	0.0063	16.2	0.0	1.1	1	0	0	1	1	1	1	Putative	transposon-encoded	protein	(DUF2080)
BPA_C	PF18040.1	gi|345005418|ref|YP_004808271.1|	-	0.11	12.4	0.0	0.11	12.4	0.0	1.1	1	0	0	1	1	1	0	beta	porphyranase	A	C-terminal
DUF3670	PF12419.8	gi|345005418|ref|YP_004808271.1|	-	0.13	12.1	0.0	0.13	12.1	0.0	1.0	1	0	0	1	1	1	0	SNF2	Helicase	protein
Tubulin	PF00091.25	gi|345005419|ref|YP_004808272.1|	-	3.4e-28	99.2	0.0	6.1e-28	98.4	0.0	1.5	1	0	0	1	1	1	1	Tubulin/FtsZ	family,	GTPase	domain
DUF2610	PF11020.8	gi|345005419|ref|YP_004808272.1|	-	0.021	14.7	0.0	1.4	8.8	0.0	2.5	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF2610)
Tubulin_2	PF13809.6	gi|345005419|ref|YP_004808272.1|	-	0.038	13.2	0.0	0.059	12.5	0.0	1.3	1	0	0	1	1	1	0	Tubulin	like
CofC	PF01983.16	gi|345005420|ref|YP_004808273.1|	-	1.1e-39	135.8	0.0	1.3e-39	135.6	0.0	1.0	1	0	0	1	1	1	1	Guanylyl	transferase	CofC	like
NTP_transf_3	PF12804.7	gi|345005420|ref|YP_004808273.1|	-	0.025	14.9	2.4	0.047	14.0	2.3	1.5	1	1	0	1	1	1	0	MobA-like	NTP	transferase	domain
Radical_SAM	PF04055.21	gi|345005421|ref|YP_004808274.1|	-	1.9e-14	54.4	0.0	3.4e-14	53.6	0.0	1.4	1	0	0	1	1	1	1	Radical	SAM	superfamily
MS_channel	PF00924.18	gi|345005423|ref|YP_004808276.1|	-	1.6e-45	155.2	0.0	2.3e-45	154.7	0.0	1.2	1	0	0	1	1	1	1	Mechanosensitive	ion	channel
Aminotran_1_2	PF00155.21	gi|345005424|ref|YP_004808277.1|	-	1.7e-68	231.4	0.0	2e-68	231.3	0.0	1.0	1	0	0	1	1	1	1	Aminotransferase	class	I	and	II
Beta_elim_lyase	PF01212.21	gi|345005424|ref|YP_004808277.1|	-	0.00013	21.4	0.0	0.00022	20.6	0.0	1.2	1	0	0	1	1	1	1	Beta-eliminating	lyase
DegT_DnrJ_EryC1	PF01041.17	gi|345005424|ref|YP_004808277.1|	-	0.0069	15.7	0.3	0.011	15.0	0.3	1.3	1	0	0	1	1	1	1	DegT/DnrJ/EryC1/StrS	aminotransferase	family
Radical_SAM	PF04055.21	gi|345005425|ref|YP_004808278.1|	-	1.7e-11	44.8	0.0	3.8e-11	43.6	0.0	1.6	1	0	0	1	1	1	1	Radical	SAM	superfamily
FAD-oxidase_C	PF02913.19	gi|345005426|ref|YP_004808279.1|	-	4.8e-60	203.3	0.1	7e-60	202.7	0.1	1.2	1	0	0	1	1	1	1	FAD	linked	oxidases,	C-terminal	domain
FAD_binding_4	PF01565.23	gi|345005426|ref|YP_004808279.1|	-	1.2e-37	128.7	0.9	2.6e-37	127.7	0.9	1.6	1	0	0	1	1	1	1	FAD	binding	domain
Autoind_bind	PF03472.15	gi|345005426|ref|YP_004808279.1|	-	0.083	12.4	0.0	0.16	11.4	0.0	1.4	1	0	0	1	1	1	0	Autoinducer	binding	domain
SAICAR_synt	PF01259.18	gi|345005427|ref|YP_004808280.1|	-	2.6e-21	76.4	0.0	8.1e-21	74.8	0.0	1.6	1	1	0	1	1	1	1	SAICAR	synthetase
PurS	PF02700.14	gi|345005428|ref|YP_004808281.1|	-	8.6e-23	80.3	0.0	9.6e-23	80.2	0.0	1.0	1	0	0	1	1	1	1	Phosphoribosylformylglycinamidine	(FGAM)	synthase
GATase_5	PF13507.6	gi|345005429|ref|YP_004808282.1|	-	1.9e-43	148.4	0.0	2.4e-43	148.1	0.0	1.1	1	0	0	1	1	1	1	CobB/CobQ-like	glutamine	amidotransferase	domain
GATase	PF00117.28	gi|345005429|ref|YP_004808282.1|	-	1.5e-06	28.1	0.0	2.3e-06	27.5	0.0	1.3	1	1	0	1	1	1	1	Glutamine	amidotransferase	class-I
GATase_3	PF07685.14	gi|345005429|ref|YP_004808282.1|	-	9.5e-06	25.3	0.0	1.4e-05	24.7	0.0	1.3	1	0	0	1	1	1	1	CobB/CobQ-like	glutamine	amidotransferase	domain
DJ-1_PfpI	PF01965.24	gi|345005429|ref|YP_004808282.1|	-	0.0002	21.2	0.0	0.00024	20.9	0.0	1.2	1	0	0	1	1	1	1	DJ-1/PfpI	family
Peptidase_C26	PF07722.13	gi|345005429|ref|YP_004808282.1|	-	0.13	11.9	0.0	0.23	11.2	0.0	1.3	1	0	0	1	1	1	0	Peptidase	C26
Radical_SAM	PF04055.21	gi|345005430|ref|YP_004808283.1|	-	0.00072	20.0	0.1	0.0013	19.1	0.1	1.4	1	0	0	1	1	1	1	Radical	SAM	superfamily
UCR_hinge	PF02320.16	gi|345005430|ref|YP_004808283.1|	-	0.18	12.0	0.2	0.18	12.0	0.2	3.3	4	0	0	4	4	4	0	Ubiquinol-cytochrome	C	reductase	hinge	protein
VanZ	PF04892.12	gi|345005431|ref|YP_004808284.1|	-	3.2e-06	27.8	0.1	4.3e-06	27.4	0.1	1.3	1	1	0	1	1	1	1	VanZ	like	family
DUF2279	PF10043.9	gi|345005431|ref|YP_004808284.1|	-	0.05	14.4	0.0	0.082	13.7	0.0	1.3	1	0	0	1	1	1	0	Predicted	periplasmic	lipoprotein	(DUF2279)
Sec61_beta	PF03911.16	gi|345005431|ref|YP_004808284.1|	-	7.9	6.6	8.8	16	5.7	0.4	2.5	2	0	0	2	2	2	0	Sec61beta	family
AFOR_C	PF01314.18	gi|345005432|ref|YP_004808285.1|	-	1.5e-117	392.8	4.0	1.8e-117	392.6	4.0	1.1	1	0	0	1	1	1	1	Aldehyde	ferredoxin	oxidoreductase,	domains	2	&	3
AFOR_N	PF02730.15	gi|345005432|ref|YP_004808285.1|	-	7.6e-71	238.1	0.2	1.3e-70	237.4	0.2	1.4	1	0	0	1	1	1	1	Aldehyde	ferredoxin	oxidoreductase,	N-terminal	domain
FA_desaturase	PF00487.24	gi|345005433|ref|YP_004808286.1|	-	0.022	14.6	2.2	0.025	14.4	2.2	1.1	1	0	0	1	1	1	0	Fatty	acid	desaturase
DUF2244	PF10003.9	gi|345005433|ref|YP_004808286.1|	-	0.024	14.3	3.8	0.029	14.0	3.8	1.1	1	0	0	1	1	1	0	Integral	membrane	protein	(DUF2244)
Phage_holin_3_6	PF07332.11	gi|345005433|ref|YP_004808286.1|	-	0.096	12.7	9.5	0.13	12.3	9.5	1.2	1	0	0	1	1	1	0	Putative	Actinobacterial	Holin-X,	holin	superfamily	III
DUF2207	PF09972.9	gi|345005433|ref|YP_004808286.1|	-	5	5.8	7.0	5.9	5.5	7.0	1.0	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2207)
FeoB_associated	PF12669.7	gi|345005433|ref|YP_004808286.1|	-	9.5	6.7	7.3	1.9	8.9	0.5	2.2	2	0	0	2	2	2	0	FeoB-associated	Cys-rich	membrane	protein
ThiS	PF02597.20	gi|345005435|ref|YP_004808288.1|	-	6.2e-17	62.0	0.3	2.1e-16	60.3	0.2	1.9	2	0	0	2	2	2	1	ThiS	family
Cupin_2	PF07883.11	gi|345005435|ref|YP_004808288.1|	-	0.029	14.1	0.0	0.069	12.9	0.0	1.6	1	0	0	1	1	1	0	Cupin	domain
TrkA_C	PF02080.21	gi|345005435|ref|YP_004808288.1|	-	0.036	13.9	0.1	0.083	12.7	0.1	1.6	1	0	0	1	1	1	0	TrkA-C	domain
Aldo_ket_red	PF00248.21	gi|345005436|ref|YP_004808289.1|	-	1.6e-49	168.7	1.4	5.2e-47	160.5	1.4	2.0	1	1	0	1	1	1	1	Aldo/keto	reductase	family
Cupin_2	PF07883.11	gi|345005438|ref|YP_004808291.1|	-	2.1e-10	40.2	1.7	3.1e-10	39.6	1.7	1.3	1	0	0	1	1	1	1	Cupin	domain
PCO_ADO	PF07847.12	gi|345005438|ref|YP_004808291.1|	-	0.0051	16.3	0.0	0.0051	16.3	0.0	1.1	1	0	0	1	1	1	1	PCO_ADO
DMSP_lyase	PF16867.5	gi|345005438|ref|YP_004808291.1|	-	0.0058	16.3	0.1	0.0065	16.1	0.1	1.1	1	0	0	1	1	1	1	Dimethlysulfonioproprionate	lyase
MG4	PF17789.1	gi|345005439|ref|YP_004808292.1|	-	0.0002	21.5	7.0	0.066	13.4	0.7	2.6	2	0	0	2	2	2	2	Macroglobulin	domain	MG4
CarboxypepD_reg	PF13620.6	gi|345005439|ref|YP_004808292.1|	-	0.00074	19.7	9.8	0.038	14.3	2.7	2.8	2	1	0	2	2	2	2	Carboxypeptidase	regulatory-like	domain
ComGG	PF14173.6	gi|345005439|ref|YP_004808292.1|	-	0.0045	17.4	6.4	1.7	9.1	0.6	3.2	2	1	1	3	3	3	2	ComG	operon	protein	7
CooC_C	PF15976.5	gi|345005439|ref|YP_004808292.1|	-	0.0094	16.0	1.9	1.2	9.3	0.1	2.5	2	0	0	2	2	2	2	CS1-pili	formation	C-terminal
Membrane_bind	PF14564.6	gi|345005439|ref|YP_004808292.1|	-	0.01	16.3	2.2	0.53	10.7	0.6	2.4	2	0	0	2	2	2	0	Membrane	binding
PilN_bio_d	PF18222.1	gi|345005439|ref|YP_004808292.1|	-	0.032	14.6	1.8	5.1	7.6	0.2	2.5	1	1	0	2	2	2	0	PilN	biogenesis	protein	dimerization	domain
MetallophosN	PF16371.5	gi|345005439|ref|YP_004808292.1|	-	0.062	13.6	8.0	2	8.7	0.8	2.7	2	0	0	2	2	2	0	N	terminal	of	Calcineurin-like	phosphoesterase
XPB_DRD	PF18458.1	gi|345005439|ref|YP_004808292.1|	-	0.084	12.8	0.1	10	6.1	0.0	3.3	4	0	0	4	4	4	0	Xeroderma	pigmentosum	group	B	helicase	damage	recognition	domain
Cu_amine_oxidN1	PF07833.11	gi|345005439|ref|YP_004808292.1|	-	0.76	10.3	9.5	2.3	8.8	1.9	3.0	1	1	2	3	3	3	0	Copper	amine	oxidase	N-terminal	domain
DUF1189	PF06691.11	gi|345005439|ref|YP_004808292.1|	-	1.5	8.3	6.1	2.6	7.5	0.6	2.3	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1189)
RNA_pol_inhib	PF16857.5	gi|345005440|ref|YP_004808293.1|	-	1.6	8.6	5.4	0.49	10.2	0.5	2.4	2	1	1	3	3	3	0	RNA	polymerase	inhibitor
GMP_synt_C	PF00958.22	gi|345005441|ref|YP_004808294.1|	-	3e-31	107.3	0.1	4.2e-30	103.6	0.0	2.6	2	1	1	3	3	3	1	GMP	synthase	C	terminal	domain
NAD_synthase	PF02540.17	gi|345005441|ref|YP_004808294.1|	-	2e-09	37.0	0.0	1.1e-06	28.0	0.0	2.2	2	0	0	2	2	2	2	NAD	synthase
tRNA_Me_trans	PF03054.16	gi|345005441|ref|YP_004808294.1|	-	5.5e-05	22.1	0.0	0.0018	17.2	0.0	2.1	2	0	0	2	2	2	1	tRNA	methyl	transferase
QueC	PF06508.13	gi|345005441|ref|YP_004808294.1|	-	0.0088	15.6	0.0	0.02	14.4	0.0	1.6	2	0	0	2	2	2	1	Queuosine	biosynthesis	protein	QueC
Asn_synthase	PF00733.21	gi|345005441|ref|YP_004808294.1|	-	0.018	14.7	0.0	0.028	14.1	0.0	1.3	1	0	0	1	1	1	0	Asparagine	synthase
TmoB	PF06234.12	gi|345005441|ref|YP_004808294.1|	-	0.021	14.9	0.8	1.8	8.7	0.4	2.5	2	0	0	2	2	2	0	Toluene-4-monooxygenase	system	protein	B	(TmoB)
PAPS_reduct	PF01507.19	gi|345005441|ref|YP_004808294.1|	-	0.026	14.6	0.0	0.04	13.9	0.0	1.4	1	0	0	1	1	1	0	Phosphoadenosine	phosphosulfate	reductase	family
ThiI	PF02568.14	gi|345005441|ref|YP_004808294.1|	-	0.027	14.1	0.0	0.071	12.7	0.0	1.7	1	1	0	1	1	1	0	Thiamine	biosynthesis	protein	(ThiI)
Arginosuc_synth	PF00764.19	gi|345005441|ref|YP_004808294.1|	-	0.078	12.3	0.0	0.11	11.7	0.0	1.2	1	0	0	1	1	1	0	Arginosuccinate	synthase
CTP_synth_N	PF06418.14	gi|345005442|ref|YP_004808295.1|	-	4.7e-124	413.0	0.0	6e-124	412.6	0.0	1.1	1	0	0	1	1	1	1	CTP	synthase	N-terminus
GATase	PF00117.28	gi|345005442|ref|YP_004808295.1|	-	1.4e-54	184.8	0.0	2.1e-54	184.2	0.0	1.3	1	0	0	1	1	1	1	Glutamine	amidotransferase	class-I
Peptidase_C26	PF07722.13	gi|345005442|ref|YP_004808295.1|	-	8.2e-06	25.7	0.0	8.2e-05	22.5	0.0	2.4	2	1	0	2	2	2	1	Peptidase	C26
CbiA	PF01656.23	gi|345005442|ref|YP_004808295.1|	-	0.0014	18.7	0.0	0.0023	18.0	0.0	1.6	1	1	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
Rieske	PF00355.26	gi|345005443|ref|YP_004808296.1|	-	0.00035	20.5	0.0	0.00078	19.3	0.0	1.6	1	0	0	1	1	1	1	Rieske	[2Fe-2S]	domain
ThiS	PF02597.20	gi|345005445|ref|YP_004808298.1|	-	4.2e-16	59.3	0.1	4.7e-16	59.2	0.1	1.0	1	0	0	1	1	1	1	ThiS	family
TrkA_C	PF02080.21	gi|345005446|ref|YP_004808299.1|	-	0.00031	20.5	0.2	0.00088	19.1	0.2	1.8	1	0	0	1	1	1	1	TrkA-C	domain
DUF3159	PF11361.8	gi|345005446|ref|YP_004808299.1|	-	0.04	13.7	2.0	0.081	12.7	2.0	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3159)
TrkA_C	PF02080.21	gi|345005447|ref|YP_004808300.1|	-	5.2e-11	42.2	0.1	1.6e-10	40.7	0.1	1.9	1	0	0	1	1	1	1	TrkA-C	domain
FSA_C	PF10479.9	gi|345005447|ref|YP_004808300.1|	-	0.084	11.0	0.9	0.11	10.6	0.9	1.1	1	0	0	1	1	1	0	Fragile	site-associated	protein	C-terminus
TrkA_N	PF02254.18	gi|345005448|ref|YP_004808301.1|	-	3.2e-31	108.0	0.9	5.1e-31	107.3	0.9	1.3	1	0	0	1	1	1	1	TrkA-N	domain
Ion_trans_2	PF07885.16	gi|345005448|ref|YP_004808301.1|	-	4.4e-14	52.2	4.7	4.4e-14	52.2	4.7	2.2	2	0	0	2	2	2	1	Ion	channel
Ion_trans	PF00520.31	gi|345005448|ref|YP_004808301.1|	-	1.2e-05	24.7	4.6	1.5e-05	24.4	2.9	1.8	1	1	1	2	2	2	1	Ion	transport	protein
IRK	PF01007.20	gi|345005448|ref|YP_004808301.1|	-	0.01	15.6	0.1	0.026	14.4	0.1	1.7	1	0	0	1	1	1	0	Inward	rectifier	potassium	channel	transmembrane	domain
Aldolase	PF01081.19	gi|345005448|ref|YP_004808301.1|	-	0.017	14.6	0.1	0.03	13.7	0.1	1.4	1	0	0	1	1	1	0	KDPG	and	KHG	aldolase
Sacchrp_dh_NADP	PF03435.18	gi|345005448|ref|YP_004808301.1|	-	0.019	15.2	0.1	0.035	14.4	0.1	1.4	1	0	0	1	1	1	0	Saccharopine	dehydrogenase	NADP	binding	domain
Peptidase_A24	PF01478.18	gi|345005448|ref|YP_004808301.1|	-	0.092	13.2	3.7	0.38	11.2	3.7	2.1	1	1	0	1	1	1	0	Type	IV	leader	peptidase	family
Phosphonate-bd	PF12974.7	gi|345005448|ref|YP_004808301.1|	-	0.094	12.3	1.1	0.16	11.5	0.1	2.0	2	1	0	2	2	2	0	ABC	transporter,	phosphonate,	periplasmic	substrate-binding	protein
Usp	PF00582.26	gi|345005449|ref|YP_004808302.1|	-	1.6e-12	48.1	10.6	6.9e-09	36.3	2.7	3.7	3	1	0	3	3	3	2	Universal	stress	protein	family
HPP	PF04982.13	gi|345005449|ref|YP_004808302.1|	-	1.1e-09	38.5	13.0	1.1e-09	38.5	13.0	2.2	2	1	0	2	2	2	1	HPP	family
DUF4271	PF14093.6	gi|345005449|ref|YP_004808302.1|	-	4	7.3	5.4	3.3	7.6	1.2	2.0	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4271)
PNP_UDP_1	PF01048.20	gi|345005450|ref|YP_004808303.1|	-	1.8e-45	155.1	2.5	2e-45	154.9	2.5	1.0	1	0	0	1	1	1	1	Phosphorylase	superfamily
DUF63	PF01889.17	gi|345005452|ref|YP_004808305.1|	-	3e-18	67.0	0.1	3.8e-18	66.6	0.1	1.1	1	0	0	1	1	1	1	Membrane	protein	of	unknown	function	DUF63
DeoC	PF01791.9	gi|345005453|ref|YP_004808306.1|	-	5.2e-08	32.8	3.2	0.00052	19.7	1.4	2.1	2	0	0	2	2	2	2	DeoC/LacD	family	aldolase
Ribosomal_S6e	PF01092.19	gi|345005454|ref|YP_004808307.1|	-	1.2e-37	128.7	0.0	1.5e-37	128.4	0.0	1.0	1	0	0	1	1	1	1	Ribosomal	protein	S6e
DBD_Tnp_Hermes	PF10683.9	gi|345005458|ref|YP_004808311.1|	-	0.069	12.8	0.2	0.15	11.7	0.0	1.6	2	0	0	2	2	2	0	Hermes	transposase	DNA-binding	domain
DHHA1	PF02272.19	gi|345005459|ref|YP_004808312.1|	-	0.0059	17.0	0.2	0.032	14.6	0.1	2.3	2	0	0	2	2	2	1	DHHA1	domain
DHH	PF01368.20	gi|345005459|ref|YP_004808312.1|	-	0.035	14.4	0.3	0.072	13.3	0.3	1.5	1	0	0	1	1	1	0	DHH	family
CoA_binding_2	PF13380.6	gi|345005459|ref|YP_004808312.1|	-	0.11	13.0	0.1	0.59	10.6	0.0	2.3	2	0	0	2	2	2	0	CoA	binding	domain
DUF3364	PF11844.8	gi|345005459|ref|YP_004808312.1|	-	0.48	10.7	1.8	0.79	10.0	0.1	2.2	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF3364)
Usp	PF00582.26	gi|345005460|ref|YP_004808313.1|	-	4.9e-33	114.6	5.8	5.5e-33	114.4	5.8	1.0	1	0	0	1	1	1	1	Universal	stress	protein	family
DUF3280	PF11684.8	gi|345005460|ref|YP_004808313.1|	-	0.0015	18.9	2.5	0.0045	17.4	0.9	1.9	1	1	1	2	2	2	1	Protein	of	unknown	function	(DUF2380)
Usp	PF00582.26	gi|345005461|ref|YP_004808314.1|	-	2.4e-16	60.5	5.8	3.5e-16	60.0	5.8	1.2	1	0	0	1	1	1	1	Universal	stress	protein	family
Acetyltransf_1	PF00583.25	gi|345005462|ref|YP_004808315.1|	-	3.6e-17	62.7	0.0	5e-17	62.2	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_10	PF13673.7	gi|345005462|ref|YP_004808315.1|	-	1.1e-12	48.0	0.0	1.6e-12	47.5	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_7	PF13508.7	gi|345005462|ref|YP_004808315.1|	-	2.3e-10	40.8	0.0	3.8e-10	40.0	0.0	1.3	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_3	PF13302.7	gi|345005462|ref|YP_004808315.1|	-	5.7e-09	36.8	0.0	7.5e-09	36.4	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
FR47	PF08445.10	gi|345005462|ref|YP_004808315.1|	-	1.9e-06	27.7	0.0	3.2e-06	27.0	0.0	1.2	1	0	0	1	1	1	1	FR47-like	protein
Acetyltransf_9	PF13527.7	gi|345005462|ref|YP_004808315.1|	-	1.1e-05	25.6	0.0	8.6e-05	22.6	0.0	2.0	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_4	PF13420.7	gi|345005462|ref|YP_004808315.1|	-	0.011	15.8	0.0	0.015	15.4	0.0	1.2	1	0	0	1	1	1	0	Acetyltransferase	(GNAT)	domain
Acetyltransf_8	PF13523.6	gi|345005462|ref|YP_004808315.1|	-	0.014	15.1	0.0	0.044	13.5	0.0	1.7	2	0	0	2	2	2	0	Acetyltransferase	(GNAT)	domain
Acetyltransf_CG	PF14542.6	gi|345005462|ref|YP_004808315.1|	-	0.034	14.3	0.0	0.058	13.5	0.0	1.4	1	0	0	1	1	1	0	GCN5-related	N-acetyl-transferase
Usp	PF00582.26	gi|345005463|ref|YP_004808316.1|	-	7e-11	42.8	0.5	6.1e-09	36.5	0.5	2.0	1	1	0	1	1	1	1	Universal	stress	protein	family
zf-ribbon_3	PF13248.6	gi|345005464|ref|YP_004808317.1|	-	0.083	12.3	0.5	0.15	11.5	0.5	1.4	1	0	0	1	1	1	0	zinc-ribbon	domain
zinc_ribbon_4	PF13717.6	gi|345005464|ref|YP_004808317.1|	-	0.1	12.5	0.1	0.2	11.6	0.1	1.5	1	0	0	1	1	1	0	zinc-ribbon	domain
Peptidase_M29	PF02073.15	gi|345005465|ref|YP_004808318.1|	-	7.6e-63	212.7	0.8	8.8e-63	212.5	0.8	1.0	1	0	0	1	1	1	1	Thermophilic	metalloprotease	(M29)
X	PF00739.19	gi|345005465|ref|YP_004808318.1|	-	0.08	13.1	0.0	0.18	11.9	0.0	1.6	1	0	0	1	1	1	0	Trans-activation	protein	X
Amidohydro_1	PF01979.20	gi|345005466|ref|YP_004808319.1|	-	8.7e-32	110.8	0.8	1.2e-31	110.3	0.8	1.2	1	0	0	1	1	1	1	Amidohydrolase	family
Amidohydro_3	PF07969.11	gi|345005466|ref|YP_004808319.1|	-	3.6e-13	49.8	12.7	3.1e-10	40.1	5.9	2.3	2	0	0	2	2	2	2	Amidohydrolase	family
SinI	PF08671.10	gi|345005466|ref|YP_004808319.1|	-	0.38	10.6	2.9	11	5.9	0.0	2.8	3	0	0	3	3	3	0	Anti-repressor	SinI
NAD_binding_2	PF03446.15	gi|345005467|ref|YP_004808320.1|	-	2.8e-36	125.1	0.0	4e-36	124.6	0.0	1.2	1	0	0	1	1	1	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
6PGD	PF00393.19	gi|345005467|ref|YP_004808320.1|	-	5.5e-24	85.0	0.0	7.5e-24	84.6	0.0	1.2	1	0	0	1	1	1	1	6-phosphogluconate	dehydrogenase,	C-terminal	domain
F420_oxidored	PF03807.17	gi|345005467|ref|YP_004808320.1|	-	4.1e-06	27.3	0.0	7.3e-06	26.5	0.0	1.4	1	0	0	1	1	1	1	NADP	oxidoreductase	coenzyme	F420-dependent
TrkA_N	PF02254.18	gi|345005467|ref|YP_004808320.1|	-	0.00012	22.3	0.3	0.00033	20.9	0.0	1.8	2	0	0	2	2	2	1	TrkA-N	domain
NAD_binding_11	PF14833.6	gi|345005467|ref|YP_004808320.1|	-	0.00038	20.7	0.0	0.011	15.9	0.0	2.8	2	1	1	3	3	3	1	NAD-binding	of	NADP-dependent	3-hydroxyisobutyrate	dehydrogenase
3HCDH_N	PF02737.18	gi|345005467|ref|YP_004808320.1|	-	0.00043	20.2	0.0	0.0006	19.8	0.0	1.3	1	0	0	1	1	1	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
2-Hacid_dh_C	PF02826.19	gi|345005467|ref|YP_004808320.1|	-	0.0017	17.8	0.0	0.0025	17.2	0.0	1.4	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
NAD_binding_10	PF13460.6	gi|345005467|ref|YP_004808320.1|	-	0.0033	17.4	0.4	0.22	11.4	0.0	2.5	3	0	0	3	3	3	1	NAD(P)H-binding
UDPG_MGDP_dh_N	PF03721.14	gi|345005467|ref|YP_004808320.1|	-	0.051	13.2	0.0	0.21	11.2	0.1	1.8	2	0	0	2	2	2	0	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
DapB_N	PF01113.20	gi|345005467|ref|YP_004808320.1|	-	0.25	11.4	0.9	1	9.5	0.9	2.0	1	1	0	1	1	1	0	Dihydrodipicolinate	reductase,	N-terminus
Ferritin_2	PF13668.6	gi|345005468|ref|YP_004808321.1|	-	3.4e-38	130.9	2.4	6.7e-38	130.0	2.4	1.5	1	0	0	1	1	1	1	Ferritin-like	domain
DREPP	PF05558.12	gi|345005468|ref|YP_004808321.1|	-	0.49	10.3	10.2	1	9.2	10.2	1.6	1	0	0	1	1	1	0	DREPP	plasma	membrane	polypeptide
NESP55	PF06390.12	gi|345005468|ref|YP_004808321.1|	-	0.66	9.5	13.0	1.1	8.8	13.0	1.4	1	0	0	1	1	1	0	Neuroendocrine-specific	golgi	protein	P55	(NESP55)
RNA_polI_A14	PF08203.11	gi|345005468|ref|YP_004808321.1|	-	2.6	8.8	6.6	9.1	7.1	6.6	2.0	1	1	0	1	1	1	0	Yeast	RNA	polymerase	I	subunit	RPA14
ABC2_membrane_2	PF12679.7	gi|345005469|ref|YP_004808322.1|	-	3.8e-52	177.4	12.7	4.7e-52	177.1	12.7	1.1	1	0	0	1	1	1	1	ABC-2	family	transporter	protein
ABC2_membrane	PF01061.24	gi|345005469|ref|YP_004808322.1|	-	1.2e-10	41.2	11.6	1.2e-10	41.2	11.6	2.1	2	0	0	2	2	2	1	ABC-2	type	transporter
ABC2_membrane_4	PF12730.7	gi|345005469|ref|YP_004808322.1|	-	5.3e-10	39.5	2.5	5.3e-10	39.5	2.5	2.1	2	1	0	2	2	2	1	ABC-2	family	transporter	protein
ABC2_membrane_5	PF13346.6	gi|345005469|ref|YP_004808322.1|	-	8.7e-07	28.7	3.6	1.8e-06	27.7	3.1	1.8	2	0	0	2	2	2	1	ABC-2	family	transporter	protein
ABC2_membrane_3	PF12698.7	gi|345005469|ref|YP_004808322.1|	-	0.00041	19.6	15.1	0.00061	19.0	15.1	1.4	1	0	0	1	1	1	1	ABC-2	family	transporter	protein
ABC_tran	PF00005.27	gi|345005470|ref|YP_004808323.1|	-	1.7e-26	93.4	0.0	3.1e-26	92.5	0.0	1.4	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|345005470|ref|YP_004808323.1|	-	4.7e-11	43.0	0.0	2.1e-07	31.0	0.0	2.1	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
DUF4162	PF13732.6	gi|345005470|ref|YP_004808323.1|	-	9.5e-09	35.9	0.0	2.1e-08	34.8	0.0	1.6	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4162)
AAA_30	PF13604.6	gi|345005470|ref|YP_004808323.1|	-	7.4e-05	22.5	0.2	0.0003	20.6	0.0	2.0	2	0	0	2	2	2	1	AAA	domain
AAA_23	PF13476.6	gi|345005470|ref|YP_004808323.1|	-	0.017	15.6	0.0	0.031	14.8	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
MMR_HSR1	PF01926.23	gi|345005470|ref|YP_004808323.1|	-	0.02	15.0	0.2	0.71	10.0	0.0	2.3	2	0	0	2	2	2	0	50S	ribosome-binding	GTPase
RsgA_GTPase	PF03193.16	gi|345005470|ref|YP_004808323.1|	-	0.02	14.8	0.0	0.041	13.8	0.0	1.5	1	0	0	1	1	1	0	RsgA	GTPase
AAA_29	PF13555.6	gi|345005470|ref|YP_004808323.1|	-	0.054	13.2	0.0	0.12	12.1	0.0	1.5	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
SMC_N	PF02463.19	gi|345005470|ref|YP_004808323.1|	-	0.11	11.9	0.0	12	5.2	0.0	2.2	2	0	0	2	2	2	0	RecF/RecN/SMC	N	terminal	domain
ATP_bind_1	PF03029.17	gi|345005470|ref|YP_004808323.1|	-	0.12	12.1	0.0	0.24	11.1	0.0	1.5	1	0	0	1	1	1	0	Conserved	hypothetical	ATP	binding	protein
UvrC_HhH_N	PF08459.11	gi|345005472|ref|YP_004808325.1|	-	5.5e-41	140.0	0.0	1e-40	139.2	0.0	1.5	1	0	0	1	1	1	1	UvrC	Helix-hairpin-helix	N-terminal
HHH_5	PF14520.6	gi|345005472|ref|YP_004808325.1|	-	3.7e-13	49.9	0.1	9.9e-13	48.5	0.1	1.8	1	0	0	1	1	1	1	Helix-hairpin-helix	domain
HHH	PF00633.23	gi|345005472|ref|YP_004808325.1|	-	1.4e-09	37.3	0.0	1.4e-07	31.0	0.0	2.7	2	0	0	2	2	2	1	Helix-hairpin-helix	motif
HHH_2	PF12826.7	gi|345005472|ref|YP_004808325.1|	-	2.2e-09	37.3	0.0	5.7e-09	36.0	0.0	1.6	1	0	0	1	1	1	1	Helix-hairpin-helix	motif
GIY-YIG	PF01541.24	gi|345005472|ref|YP_004808325.1|	-	1.9e-07	31.3	0.0	3.3e-07	30.5	0.0	1.4	1	0	0	1	1	1	1	GIY-YIG	catalytic	domain
UVR	PF02151.19	gi|345005472|ref|YP_004808325.1|	-	2.5e-05	23.9	4.2	2.5e-05	23.9	4.2	2.3	2	0	0	2	2	2	1	UvrB/uvrC	motif
5_3_exonuc	PF01367.20	gi|345005472|ref|YP_004808325.1|	-	0.00015	22.3	0.0	0.97	10.1	0.0	3.3	2	1	1	3	3	3	2	5'-3'	exonuclease,	C-terminal	SAM	fold
HHH_3	PF12836.7	gi|345005472|ref|YP_004808325.1|	-	0.0078	16.5	0.0	0.044	14.0	0.0	2.1	2	0	0	2	2	2	1	Helix-hairpin-helix	motif
HHH_8	PF14716.6	gi|345005472|ref|YP_004808325.1|	-	0.14	12.6	1.0	1.7	9.0	0.0	2.8	3	0	0	3	3	3	0	Helix-hairpin-helix	domain
CPBP	PF02517.16	gi|345005473|ref|YP_004808326.1|	-	8e-14	51.8	6.3	8e-14	51.8	6.3	2.5	2	1	0	2	2	2	1	CPBP	intramembrane	metalloprotease
Ldh_1_N	PF00056.23	gi|345005474|ref|YP_004808327.1|	-	7.3e-39	133.1	0.2	1.1e-38	132.6	0.2	1.2	1	0	0	1	1	1	1	lactate/malate	dehydrogenase,	NAD	binding	domain
Ldh_1_C	PF02866.18	gi|345005474|ref|YP_004808327.1|	-	1.1e-26	93.7	0.0	1.9e-26	93.0	0.0	1.4	1	0	0	1	1	1	1	lactate/malate	dehydrogenase,	alpha/beta	C-terminal	domain
Glyco_hydro_32C	PF08244.12	gi|345005475|ref|YP_004808328.1|	-	0.029	14.4	0.1	0.034	14.2	0.1	1.1	1	0	0	1	1	1	0	Glycosyl	hydrolases	family	32	C	terminal
DUF3110	PF11360.8	gi|345005475|ref|YP_004808328.1|	-	0.08	13.2	0.3	0.19	12.0	0.0	1.7	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3110)
MarR_2	PF12802.7	gi|345005477|ref|YP_004808330.1|	-	9.4e-05	22.2	0.0	0.00014	21.7	0.0	1.3	1	0	0	1	1	1	1	MarR	family
HTH_Crp_2	PF13545.6	gi|345005477|ref|YP_004808330.1|	-	0.00042	20.2	0.1	0.00058	19.8	0.1	1.3	1	0	0	1	1	1	1	Crp-like	helix-turn-helix	domain
Rrf2	PF02082.20	gi|345005477|ref|YP_004808330.1|	-	0.0018	18.6	0.0	0.0035	17.7	0.0	1.4	1	0	0	1	1	1	1	Transcriptional	regulator
TrmB	PF01978.19	gi|345005477|ref|YP_004808330.1|	-	0.0062	16.4	0.0	0.01	15.7	0.0	1.3	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_36	PF13730.6	gi|345005477|ref|YP_004808330.1|	-	0.012	15.5	0.0	0.018	15.0	0.0	1.3	1	0	0	1	1	1	0	Helix-turn-helix	domain
Fe_dep_repress	PF01325.19	gi|345005477|ref|YP_004808330.1|	-	0.017	15.3	0.0	0.11	12.8	0.0	2.0	2	0	0	2	2	2	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
TFIIE_alpha	PF02002.17	gi|345005477|ref|YP_004808330.1|	-	0.02	14.7	0.2	0.028	14.3	0.2	1.3	1	0	0	1	1	1	0	TFIIE	alpha	subunit
HTH_29	PF13551.6	gi|345005477|ref|YP_004808330.1|	-	0.036	14.1	0.1	0.062	13.3	0.1	1.4	1	0	0	1	1	1	0	Winged	helix-turn	helix
HTH_27	PF13463.6	gi|345005477|ref|YP_004808330.1|	-	0.046	14.2	0.1	0.094	13.2	0.1	1.6	1	1	0	1	1	1	0	Winged	helix	DNA-binding	domain
MarR	PF01047.22	gi|345005477|ref|YP_004808330.1|	-	0.053	13.4	0.0	0.098	12.6	0.0	1.4	1	0	0	1	1	1	0	MarR	family
Penicillinase_R	PF03965.16	gi|345005477|ref|YP_004808330.1|	-	0.077	13.4	0.1	0.14	12.5	0.1	1.4	1	1	0	1	1	1	0	Penicillinase	repressor
Terminase_5	PF06056.12	gi|345005477|ref|YP_004808330.1|	-	0.078	12.9	0.2	0.89	9.5	0.0	2.3	2	1	0	2	2	2	0	Putative	ATPase	subunit	of	terminase	(gpP-like)
HTH_45	PF14947.6	gi|345005477|ref|YP_004808330.1|	-	0.15	12.1	0.0	0.19	11.7	0.0	1.2	1	0	0	1	1	1	0	Winged	helix-turn-helix
HrcA_DNA-bdg	PF03444.15	gi|345005477|ref|YP_004808330.1|	-	0.18	11.5	0.0	0.25	11.0	0.0	1.2	1	0	0	1	1	1	0	Winged	helix-turn-helix	transcription	repressor,	HrcA	DNA-binding
DDE_3	PF13358.6	gi|345005478|ref|YP_004808331.1|	-	2.2e-26	92.3	0.0	3.8e-26	91.6	0.0	1.4	1	0	0	1	1	1	1	DDE	superfamily	endonuclease
HTH_32	PF13565.6	gi|345005478|ref|YP_004808331.1|	-	5.7e-15	55.7	1.1	3.1e-14	53.3	0.6	2.5	3	0	0	3	3	3	1	Homeodomain-like	domain
HTH_23	PF13384.6	gi|345005478|ref|YP_004808331.1|	-	2.3e-12	46.3	0.1	8.9e-11	41.3	0.0	2.8	2	1	0	2	2	2	1	Homeodomain-like	domain
HTH_29	PF13551.6	gi|345005478|ref|YP_004808331.1|	-	6.1e-12	45.4	0.5	1.8e-11	43.9	0.5	1.8	2	0	0	2	2	2	1	Winged	helix-turn	helix
HTH_28	PF13518.6	gi|345005478|ref|YP_004808331.1|	-	3.7e-05	23.8	0.2	0.00022	21.3	0.1	2.3	2	0	0	2	2	2	1	Helix-turn-helix	domain
Terminase_5	PF06056.12	gi|345005478|ref|YP_004808331.1|	-	0.02	14.8	0.0	0.067	13.1	0.0	1.9	1	0	0	1	1	1	0	Putative	ATPase	subunit	of	terminase	(gpP-like)
GDE_N	PF12439.8	gi|345005478|ref|YP_004808331.1|	-	0.07	12.5	0.2	0.13	11.7	0.2	1.3	1	0	0	1	1	1	0	Glycogen	debranching	enzyme	N	terminal
HTH_Tnp_Tc3_2	PF01498.18	gi|345005478|ref|YP_004808331.1|	-	0.081	13.2	0.0	0.2	11.9	0.0	1.7	1	0	0	1	1	1	0	Transposase
Helicase_C_2	PF13307.6	gi|345005479|ref|YP_004808332.1|	-	2.9e-28	99.2	0.0	5.1e-28	98.4	0.0	1.3	1	0	0	1	1	1	1	Helicase	C-terminal	domain
DEAD_2	PF06733.15	gi|345005479|ref|YP_004808332.1|	-	1.9e-09	37.4	0.0	2.4e-08	33.8	0.0	2.6	2	1	0	2	2	2	1	DEAD_2
ResIII	PF04851.15	gi|345005479|ref|YP_004808332.1|	-	0.0012	18.9	0.0	0.082	12.9	0.0	2.2	2	0	0	2	2	2	1	Type	III	restriction	enzyme,	res	subunit
PhoH	PF02562.16	gi|345005479|ref|YP_004808332.1|	-	0.0017	17.8	0.0	0.013	15.0	0.0	2.0	2	0	0	2	2	2	1	PhoH-like	protein
AAA_22	PF13401.6	gi|345005479|ref|YP_004808332.1|	-	0.007	16.7	0.0	1.7	8.9	0.0	3.2	3	0	0	3	3	3	1	AAA	domain
AAA_25	PF13481.6	gi|345005479|ref|YP_004808332.1|	-	0.011	15.3	0.6	0.076	12.6	0.0	2.5	3	0	0	3	3	3	0	AAA	domain
HBB	PF06777.11	gi|345005479|ref|YP_004808332.1|	-	0.083	12.6	0.0	0.22	11.2	0.0	1.6	1	0	0	1	1	1	0	Helical	and	beta-bridge	domain
AAA_30	PF13604.6	gi|345005479|ref|YP_004808332.1|	-	0.11	12.2	0.0	3.3	7.4	0.0	2.4	2	0	0	2	2	2	0	AAA	domain
DEAD	PF00270.29	gi|345005479|ref|YP_004808332.1|	-	0.15	11.8	0.0	9.4	6.0	0.0	2.4	2	0	0	2	2	2	0	DEAD/DEAH	box	helicase
Peptidase_S9	PF00326.21	gi|345005480|ref|YP_004808333.1|	-	1.3e-46	158.8	0.1	1.8e-46	158.3	0.1	1.2	1	0	0	1	1	1	1	Prolyl	oligopeptidase	family
Peptidase_S15	PF02129.18	gi|345005480|ref|YP_004808333.1|	-	1.5e-07	31.3	0.3	0.0016	18.1	1.2	2.2	1	1	1	2	2	2	2	X-Pro	dipeptidyl-peptidase	(S15	family)
Peptidase_S28	PF05577.12	gi|345005480|ref|YP_004808333.1|	-	3.5e-05	22.8	0.4	9.3e-05	21.4	0.1	1.7	2	0	0	2	2	2	1	Serine	carboxypeptidase	S28
Hydrolase_4	PF12146.8	gi|345005480|ref|YP_004808333.1|	-	7.8e-05	22.1	0.2	0.031	13.6	0.1	2.2	2	0	0	2	2	2	2	Serine	aminopeptidase,	S33
DPPIV_N	PF00930.21	gi|345005480|ref|YP_004808333.1|	-	0.0001	21.2	0.0	0.07	11.9	0.0	2.2	1	1	1	2	2	2	2	Dipeptidyl	peptidase	IV	(DPP	IV)	N-terminal	region
Abhydrolase_1	PF00561.20	gi|345005480|ref|YP_004808333.1|	-	0.00026	20.7	0.0	0.015	15.0	0.1	2.2	2	0	0	2	2	2	1	alpha/beta	hydrolase	fold
Pectate_lyase22	PF14583.6	gi|345005480|ref|YP_004808333.1|	-	0.00056	18.7	1.2	0.0041	15.9	0.5	2.5	2	1	1	3	3	3	1	Oligogalacturonate	lyase
Peptidase_S9_N	PF02897.15	gi|345005480|ref|YP_004808333.1|	-	0.0033	16.3	0.0	0.0055	15.5	0.0	1.3	1	0	0	1	1	1	1	Prolyl	oligopeptidase,	N-terminal	beta-propeller	domain
AXE1	PF05448.12	gi|345005480|ref|YP_004808333.1|	-	0.0041	15.9	0.1	0.032	12.9	0.1	2.0	2	0	0	2	2	2	1	Acetyl	xylan	esterase	(AXE1)
Lactonase	PF10282.9	gi|345005480|ref|YP_004808333.1|	-	0.011	15.0	0.0	0.03	13.6	0.0	1.7	2	0	0	2	2	2	0	Lactonase,	7-bladed	beta-propeller
Esterase_phd	PF10503.9	gi|345005480|ref|YP_004808333.1|	-	0.016	14.7	0.0	0.027	14.0	0.0	1.4	1	0	0	1	1	1	0	Esterase	PHB	depolymerase
DLH	PF01738.18	gi|345005480|ref|YP_004808333.1|	-	0.016	14.8	0.0	0.072	12.6	0.0	1.9	1	1	0	1	1	1	0	Dienelactone	hydrolase	family
Abhydrolase_6	PF12697.7	gi|345005480|ref|YP_004808333.1|	-	0.018	15.6	3.5	0.029	15.0	0.5	2.3	2	1	1	3	3	3	0	Alpha/beta	hydrolase	family
Kelch_4	PF13418.6	gi|345005480|ref|YP_004808333.1|	-	0.11	12.6	0.0	3.7	7.6	0.0	3.0	2	0	0	2	2	2	0	Galactose	oxidase,	central	domain
Abhydrolase_2	PF02230.16	gi|345005480|ref|YP_004808333.1|	-	0.14	12.0	0.0	5.3	6.8	0.0	2.2	2	0	0	2	2	2	0	Phospholipase/Carboxylesterase
SRAP	PF02586.14	gi|345005481|ref|YP_004808334.1|	-	1.7e-59	201.0	0.0	2e-59	200.8	0.0	1.0	1	0	0	1	1	1	1	SOS	response	associated	peptidase	(SRAP)
peroxidase	PF00141.23	gi|345005482|ref|YP_004808335.1|	-	2.4e-85	285.9	0.0	1.8e-47	161.9	0.0	2.1	2	0	0	2	2	2	2	Peroxidase
STI1	PF17830.1	gi|345005482|ref|YP_004808335.1|	-	0.016	15.1	0.2	0.056	13.4	0.0	2.0	2	0	0	2	2	2	0	STI1	domain
Thioredoxin	PF00085.20	gi|345005484|ref|YP_004808337.1|	-	3.1e-13	49.6	0.0	3.8e-13	49.3	0.0	1.0	1	0	0	1	1	1	1	Thioredoxin
Thioredoxin_2	PF13098.6	gi|345005484|ref|YP_004808337.1|	-	4e-06	27.2	0.1	0.00021	21.7	0.1	2.1	1	1	0	1	1	1	1	Thioredoxin-like	domain
TraF	PF13728.6	gi|345005484|ref|YP_004808337.1|	-	0.00044	20.2	0.0	0.0011	18.8	0.0	1.6	1	1	0	1	1	1	1	F	plasmid	transfer	operon	protein
Thioredoxin_3	PF13192.6	gi|345005484|ref|YP_004808337.1|	-	0.0015	18.5	0.0	0.0022	18.0	0.0	1.2	1	0	0	1	1	1	1	Thioredoxin	domain
OST3_OST6	PF04756.13	gi|345005484|ref|YP_004808337.1|	-	0.0037	16.7	0.0	0.0039	16.6	0.0	1.1	1	0	0	1	1	1	1	OST3	/	OST6	family,	transporter	family
Thioredoxin_7	PF13899.6	gi|345005484|ref|YP_004808337.1|	-	0.016	15.4	0.0	0.06	13.5	0.0	1.9	1	1	0	1	1	1	0	Thioredoxin-like
DUF836	PF05768.14	gi|345005484|ref|YP_004808337.1|	-	0.095	13.1	0.0	0.11	12.9	0.0	1.3	1	1	0	1	1	1	0	Glutaredoxin-like	domain	(DUF836)
Thioredoxin_5	PF13743.6	gi|345005484|ref|YP_004808337.1|	-	0.19	11.4	0.0	0.31	10.7	0.0	1.4	1	1	0	1	1	1	0	Thioredoxin
HATPase_c	PF02518.26	gi|345005485|ref|YP_004808338.1|	-	9.9e-14	51.8	0.1	2.9e-13	50.3	0.1	1.8	1	1	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HisKA	PF00512.25	gi|345005485|ref|YP_004808338.1|	-	2.1e-13	50.1	0.3	5e-13	48.9	0.3	1.7	2	0	0	2	2	2	1	His	Kinase	A	(phospho-acceptor)	domain
GAF_2	PF13185.6	gi|345005485|ref|YP_004808338.1|	-	1e-06	29.1	0.5	7.5e-06	26.3	0.0	2.4	2	1	1	3	3	3	1	GAF	domain
GAF_3	PF13492.6	gi|345005485|ref|YP_004808338.1|	-	0.0017	18.7	0.0	1	9.7	0.0	2.5	2	1	0	2	2	2	2	GAF	domain
CCB2_CCB4	PF11152.8	gi|345005485|ref|YP_004808338.1|	-	0.19	11.0	0.0	0.34	10.2	0.0	1.3	1	0	0	1	1	1	0	Cofactor	assembly	of	complex	C	subunit	B,	CCB2/CCB4
Hemerythrin	PF01814.23	gi|345005485|ref|YP_004808338.1|	-	0.25	12.0	4.7	1.1	9.8	4.8	2.1	1	1	0	1	1	1	0	Hemerythrin	HHE	cation	binding	domain
YdjM	PF04307.14	gi|345005486|ref|YP_004808339.1|	-	8.1e-06	25.3	15.6	7.9e-05	22.0	15.0	2.4	1	1	0	1	1	1	1	LexA-binding,	inner	membrane-associated	putative	hydrolase
MOSC_N	PF03476.16	gi|345005487|ref|YP_004808340.1|	-	4.3e-15	55.6	0.0	9.2e-15	54.6	0.0	1.7	1	1	0	1	1	1	1	MOSC	N-terminal	beta	barrel	domain
MOSC	PF03473.17	gi|345005487|ref|YP_004808340.1|	-	3.3e-06	27.2	0.0	5.2e-06	26.5	0.0	1.3	1	0	0	1	1	1	1	MOSC	domain
SNase	PF00565.17	gi|345005488|ref|YP_004808341.1|	-	1.7e-22	80.0	0.0	2.1e-22	79.6	0.0	1.1	1	0	0	1	1	1	1	Staphylococcal	nuclease	homologue
Excalibur	PF05901.11	gi|345005488|ref|YP_004808341.1|	-	1.3e-07	32.1	1.0	3.6e-07	30.7	1.0	1.8	1	0	0	1	1	1	1	Excalibur	calcium-binding	domain
ABC_tran	PF00005.27	gi|345005491|ref|YP_004808344.1|	-	2.1e-60	203.2	0.0	2.9e-32	112.1	0.0	2.2	2	0	0	2	2	2	2	ABC	transporter
oligo_HPY	PF08352.12	gi|345005491|ref|YP_004808344.1|	-	1.2e-30	105.7	0.1	6.3e-14	52.3	0.0	2.6	2	0	0	2	2	2	2	Oligopeptide/dipeptide	transporter,	C-terminal	region
AAA_21	PF13304.6	gi|345005491|ref|YP_004808344.1|	-	2.5e-12	47.2	2.5	3.7e-05	23.7	0.3	4.0	3	1	0	4	4	4	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_22	PF13401.6	gi|345005491|ref|YP_004808344.1|	-	1e-09	38.8	3.9	3e-05	24.3	0.4	3.8	2	2	0	2	2	2	2	AAA	domain
AAA_16	PF13191.6	gi|345005491|ref|YP_004808344.1|	-	2.8e-09	37.6	1.6	0.00015	22.2	0.4	2.5	2	0	0	2	2	2	2	AAA	ATPase	domain
SMC_N	PF02463.19	gi|345005491|ref|YP_004808344.1|	-	5.6e-09	35.8	0.0	0.00068	19.1	0.0	2.5	2	1	0	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
AAA_5	PF07728.14	gi|345005491|ref|YP_004808344.1|	-	2.9e-07	30.6	0.8	0.039	14.0	0.0	3.5	4	0	0	4	4	4	2	AAA	domain	(dynein-related	subfamily)
AAA_29	PF13555.6	gi|345005491|ref|YP_004808344.1|	-	2.9e-06	26.9	0.2	0.028	14.2	0.0	2.5	2	0	0	2	2	2	2	P-loop	containing	region	of	AAA	domain
AAA_7	PF12775.7	gi|345005491|ref|YP_004808344.1|	-	0.00018	21.1	0.0	0.51	9.8	0.0	2.2	2	0	0	2	2	2	2	P-loop	containing	dynein	motor	region
AAA	PF00004.29	gi|345005491|ref|YP_004808344.1|	-	0.00025	21.5	0.1	0.14	12.6	0.0	2.8	3	0	0	3	3	3	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
SbcCD_C	PF13558.6	gi|345005491|ref|YP_004808344.1|	-	0.00038	20.6	0.5	0.073	13.3	0.0	3.7	2	2	0	2	2	2	1	Putative	exonuclease	SbcCD,	C	subunit
AIG1	PF04548.16	gi|345005491|ref|YP_004808344.1|	-	0.00047	19.5	0.3	0.051	12.9	0.1	2.3	2	0	0	2	2	2	1	AIG1	family
RsgA_GTPase	PF03193.16	gi|345005491|ref|YP_004808344.1|	-	0.00056	19.9	0.4	0.93	9.4	0.0	2.3	2	0	0	2	2	2	2	RsgA	GTPase
PRK	PF00485.18	gi|345005491|ref|YP_004808344.1|	-	0.00066	19.5	0.2	0.9	9.2	0.1	2.6	3	0	0	3	3	3	2	Phosphoribulokinase	/	Uridine	kinase	family
AAA_30	PF13604.6	gi|345005491|ref|YP_004808344.1|	-	0.0019	17.9	0.0	0.89	9.2	0.0	2.5	2	0	0	2	2	2	1	AAA	domain
RNA_helicase	PF00910.22	gi|345005491|ref|YP_004808344.1|	-	0.0025	18.2	0.1	1.1	9.7	0.0	2.3	2	0	0	2	2	2	1	RNA	helicase
AAA_33	PF13671.6	gi|345005491|ref|YP_004808344.1|	-	0.0036	17.5	0.1	0.44	10.7	0.0	2.4	2	0	0	2	2	2	1	AAA	domain
Zeta_toxin	PF06414.12	gi|345005491|ref|YP_004808344.1|	-	0.0038	16.5	0.3	2.1	7.6	0.1	2.4	2	0	0	2	2	2	2	Zeta	toxin
Mg_chelatase	PF01078.21	gi|345005491|ref|YP_004808344.1|	-	0.0079	15.6	0.0	0.17	11.2	0.0	2.5	3	0	0	3	3	2	1	Magnesium	chelatase,	subunit	ChlI
AAA_15	PF13175.6	gi|345005491|ref|YP_004808344.1|	-	0.011	15.4	0.0	0.82	9.3	0.0	2.6	3	0	0	3	3	3	0	AAA	ATPase	domain
NB-ARC	PF00931.22	gi|345005491|ref|YP_004808344.1|	-	0.014	14.6	0.4	3.4	6.8	0.1	2.3	2	0	0	2	2	2	0	NB-ARC	domain
MMR_HSR1	PF01926.23	gi|345005491|ref|YP_004808344.1|	-	0.016	15.3	0.1	5.3	7.2	0.0	2.6	2	0	0	2	2	2	0	50S	ribosome-binding	GTPase
DUF87	PF01935.17	gi|345005491|ref|YP_004808344.1|	-	0.018	15.2	1.2	1.6	8.8	0.1	2.5	2	0	0	2	2	2	0	Helicase	HerA,	central	domain
AAA_23	PF13476.6	gi|345005491|ref|YP_004808344.1|	-	0.02	15.4	0.0	8.9	6.8	0.0	2.3	2	0	0	2	2	2	0	AAA	domain
AAA_25	PF13481.6	gi|345005491|ref|YP_004808344.1|	-	0.022	14.4	1.3	3.8	7.0	0.4	3.2	3	1	0	3	3	3	0	AAA	domain
Sigma54_activat	PF00158.26	gi|345005491|ref|YP_004808344.1|	-	0.025	14.3	3.5	5	6.8	0.1	3.2	4	0	0	4	4	3	0	Sigma-54	interaction	domain
NACHT	PF05729.12	gi|345005491|ref|YP_004808344.1|	-	0.025	14.5	1.1	3.5	7.5	0.1	2.4	2	0	0	2	2	2	0	NACHT	domain
TsaE	PF02367.17	gi|345005491|ref|YP_004808344.1|	-	0.099	12.7	0.4	19	5.3	0.0	2.4	2	0	0	2	2	2	0	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
DUF3987	PF13148.6	gi|345005491|ref|YP_004808344.1|	-	0.11	11.5	0.1	5.8	5.8	0.0	2.2	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3987)
ATP-synt_ab	PF00006.25	gi|345005491|ref|YP_004808344.1|	-	0.13	11.9	0.0	1.1	8.9	0.0	2.1	2	0	0	2	2	2	0	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
APS_kinase	PF01583.20	gi|345005491|ref|YP_004808344.1|	-	0.13	12.1	0.3	7.9	6.3	0.1	2.4	2	0	0	2	2	2	0	Adenylylsulphate	kinase
DUF815	PF05673.13	gi|345005491|ref|YP_004808344.1|	-	0.19	10.9	0.3	4.9	6.2	0.0	2.5	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF815)
BPD_transp_1	PF00528.22	gi|345005492|ref|YP_004808345.1|	-	8e-33	113.7	9.5	1.1e-32	113.3	7.9	1.8	2	0	0	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
OppC_N	PF12911.7	gi|345005492|ref|YP_004808345.1|	-	2.6e-06	27.3	0.1	2.6e-06	27.3	0.1	3.2	4	1	0	4	4	4	1	N-terminal	TM	domain	of	oligopeptide	transport	permease	C
BPD_transp_1	PF00528.22	gi|345005493|ref|YP_004808346.1|	-	2e-38	132.0	13.9	2e-38	132.0	13.9	1.9	1	1	1	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
DUF3593	PF12159.8	gi|345005493|ref|YP_004808346.1|	-	1.5	8.9	5.1	3.7	7.6	0.5	2.8	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF3593)
SKG6	PF08693.10	gi|345005493|ref|YP_004808346.1|	-	3.3	7.2	11.7	14	5.2	11.7	2.1	1	0	0	1	1	1	0	Transmembrane	alpha-helix	domain
SBP_bac_5	PF00496.22	gi|345005494|ref|YP_004808347.1|	-	9.3e-80	268.4	5.2	1.2e-79	268.0	5.2	1.1	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	proteins,	family	5	Middle
TAT_signal	PF10518.9	gi|345005494|ref|YP_004808347.1|	-	0.00018	21.2	2.8	0.00034	20.3	2.8	1.5	1	0	0	1	1	1	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
TPR_7	PF13176.6	gi|345005494|ref|YP_004808347.1|	-	0.029	14.4	0.2	1.7	8.8	0.0	2.8	2	0	0	2	2	2	0	Tetratricopeptide	repeat
DUF1028	PF06267.12	gi|345005495|ref|YP_004808348.1|	-	1.6e-65	220.5	0.3	1.9e-65	220.3	0.3	1.0	1	0	0	1	1	1	1	Family	of	unknown	function	(DUF1028)
DUF1610	PF07754.11	gi|345005495|ref|YP_004808348.1|	-	0.11	12.5	0.0	0.39	10.7	0.0	2.0	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF1610)
DUF835	PF05763.12	gi|345005496|ref|YP_004808349.1|	-	2.7e-05	23.9	0.0	3.7e-05	23.5	0.0	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF835)
ATPase	PF06745.13	gi|345005496|ref|YP_004808349.1|	-	3.5e-05	23.3	0.0	8.5e-05	22.0	0.0	1.5	1	1	0	1	1	1	1	KaiC
PAXNEB	PF05625.11	gi|345005496|ref|YP_004808349.1|	-	0.0017	17.5	0.1	0.0039	16.4	0.1	1.3	1	1	0	1	1	1	1	PAXNEB	protein
Peptidase_C28	PF05408.11	gi|345005496|ref|YP_004808349.1|	-	0.0078	16.0	0.0	0.032	14.0	0.0	1.9	2	0	0	2	2	2	1	Foot-and-mouth	virus	L-proteinase
Neocarzinostat	PF00960.18	gi|345005496|ref|YP_004808349.1|	-	0.13	12.3	0.1	0.34	10.9	0.0	1.7	2	0	0	2	2	2	0	Neocarzinostatin	family
CoA_binding_2	PF13380.6	gi|345005497|ref|YP_004808350.1|	-	2.1e-39	134.6	0.1	2.3e-39	134.4	0.1	1.0	1	0	0	1	1	1	1	CoA	binding	domain
CoA_binding	PF02629.19	gi|345005497|ref|YP_004808350.1|	-	0.0034	18.0	0.0	0.0049	17.5	0.0	1.2	1	0	0	1	1	1	1	CoA	binding	domain
TusA	PF01206.17	gi|345005497|ref|YP_004808350.1|	-	0.056	13.3	0.0	0.097	12.5	0.0	1.3	1	0	0	1	1	1	0	Sulfurtransferase	TusA
PALP	PF00291.25	gi|345005498|ref|YP_004808351.1|	-	2.3e-57	194.7	2.0	2.6e-57	194.5	2.0	1.0	1	0	0	1	1	1	1	Pyridoxal-phosphate	dependent	enzyme
DUF2802	PF10975.8	gi|345005499|ref|YP_004808352.1|	-	0.0025	17.9	8.1	0.0089	16.1	8.1	2.0	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF2802)
HOOK	PF05622.12	gi|345005499|ref|YP_004808352.1|	-	0.0035	15.6	6.8	0.0042	15.3	6.8	1.0	1	0	0	1	1	1	1	HOOK	protein
HMMR_N	PF15905.5	gi|345005499|ref|YP_004808352.1|	-	0.0044	16.6	8.1	0.0049	16.4	8.1	1.1	1	0	0	1	1	1	1	Hyaluronan	mediated	motility	receptor	N-terminal
DegS	PF05384.11	gi|345005499|ref|YP_004808352.1|	-	0.0046	16.5	3.6	0.0054	16.2	3.6	1.3	1	0	0	1	1	1	1	Sensor	protein	DegS
RmuC	PF02646.16	gi|345005499|ref|YP_004808352.1|	-	0.0052	16.0	2.8	0.0052	16.0	2.8	1.2	1	1	0	1	1	1	1	RmuC	family
Med9	PF07544.13	gi|345005499|ref|YP_004808352.1|	-	0.0058	16.7	4.9	0.0074	16.3	4.2	1.5	1	1	0	1	1	1	1	RNA	polymerase	II	transcription	mediator	complex	subunit	9
DUF4618	PF15397.6	gi|345005499|ref|YP_004808352.1|	-	0.0059	16.1	1.0	0.008	15.6	1.0	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4618)
DUF1664	PF07889.12	gi|345005499|ref|YP_004808352.1|	-	0.0079	16.2	1.0	0.012	15.7	1.0	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1664)
PTRF_SDPR	PF15237.6	gi|345005499|ref|YP_004808352.1|	-	0.011	15.3	2.6	0.015	14.9	2.6	1.1	1	0	0	1	1	1	0	PTRF/SDPR	family
Striatin	PF08232.12	gi|345005499|ref|YP_004808352.1|	-	0.013	16.1	9.6	0.016	15.8	9.6	1.0	1	0	0	1	1	1	0	Striatin	family
TMPIT	PF07851.13	gi|345005499|ref|YP_004808352.1|	-	0.014	14.6	1.4	0.014	14.6	1.4	1.1	1	0	0	1	1	1	0	TMPIT-like	protein
FbpA	PF05833.11	gi|345005499|ref|YP_004808352.1|	-	0.017	13.9	7.7	0.021	13.6	7.7	1.3	1	1	0	1	1	1	0	Fibronectin-binding	protein	A	N-terminus	(FbpA)
DUF948	PF06103.11	gi|345005499|ref|YP_004808352.1|	-	0.02	15.1	0.6	0.04	14.2	0.6	1.5	1	0	0	1	1	1	0	Bacterial	protein	of	unknown	function	(DUF948)
Bacillus_HBL	PF05791.11	gi|345005499|ref|YP_004808352.1|	-	0.022	14.6	0.3	0.022	14.6	0.3	1.1	1	0	0	1	1	1	0	Bacillus	haemolytic	enterotoxin	(HBL)
DivIVA	PF05103.13	gi|345005499|ref|YP_004808352.1|	-	0.031	14.4	13.4	0.048	13.8	13.4	1.2	1	0	0	1	1	1	0	DivIVA	protein
Atg14	PF10186.9	gi|345005499|ref|YP_004808352.1|	-	0.047	12.8	2.9	0.055	12.6	2.9	1.1	1	0	0	1	1	1	0	Vacuolar	sorting	38	and	autophagy-related	subunit	14
Fib_alpha	PF08702.10	gi|345005499|ref|YP_004808352.1|	-	0.049	13.8	2.9	0.055	13.7	2.2	1.3	1	1	0	1	1	1	0	Fibrinogen	alpha/beta	chain	family
Rx_N	PF18052.1	gi|345005499|ref|YP_004808352.1|	-	0.06	13.6	3.5	0.38	11.1	3.4	2.1	1	1	0	1	1	1	0	Rx	N-terminal	domain
DUF16	PF01519.16	gi|345005499|ref|YP_004808352.1|	-	0.061	13.8	4.7	0.077	13.5	4.4	1.3	1	1	0	1	1	1	0	Protein	of	unknown	function	DUF16
KxDL	PF10241.9	gi|345005499|ref|YP_004808352.1|	-	0.066	13.5	1.2	0.11	12.8	1.2	1.3	1	0	0	1	1	1	0	Uncharacterized	conserved	protein
AATF-Che1	PF13339.6	gi|345005499|ref|YP_004808352.1|	-	0.068	13.9	2.6	0.11	13.1	2.6	1.3	1	0	0	1	1	1	0	Apoptosis	antagonizing	transcription	factor
TMF_DNA_bd	PF12329.8	gi|345005499|ref|YP_004808352.1|	-	0.068	13.2	11.1	0.16	12.0	5.4	2.4	1	1	1	2	2	2	0	TATA	element	modulatory	factor	1	DNA	binding
Prominin	PF05478.11	gi|345005499|ref|YP_004808352.1|	-	0.078	10.9	0.6	0.079	10.9	0.6	1.0	1	0	0	1	1	1	0	Prominin
WEMBL	PF05701.11	gi|345005499|ref|YP_004808352.1|	-	0.082	11.6	18.3	0.11	11.2	18.3	1.1	1	0	0	1	1	1	0	Weak	chloroplast	movement	under	blue	light
ALMT	PF11744.8	gi|345005499|ref|YP_004808352.1|	-	0.087	11.6	4.1	0.1	11.4	4.1	1.0	1	0	0	1	1	1	0	Aluminium	activated	malate	transporter
YkuI_C	PF10388.9	gi|345005499|ref|YP_004808352.1|	-	0.11	12.3	0.3	0.13	12.0	0.3	1.1	1	0	0	1	1	1	0	EAL-domain	associated	signalling	protein	domain
DUF3138	PF11336.8	gi|345005499|ref|YP_004808352.1|	-	0.12	10.9	5.8	0.15	10.6	5.8	1.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3138)
Syntaxin-6_N	PF09177.11	gi|345005499|ref|YP_004808352.1|	-	0.13	12.9	5.1	0.17	12.5	5.1	1.3	1	1	0	1	1	1	0	Syntaxin	6,	N-terminal
Spc7	PF08317.11	gi|345005499|ref|YP_004808352.1|	-	0.13	11.1	9.2	0.16	10.8	9.2	1.1	1	0	0	1	1	1	0	Spc7	kinetochore	protein
V_ATPase_I	PF01496.19	gi|345005499|ref|YP_004808352.1|	-	0.17	9.8	6.0	0.2	9.5	6.0	1.0	1	0	0	1	1	1	0	V-type	ATPase	116kDa	subunit	family
RP-C_C	PF11800.8	gi|345005499|ref|YP_004808352.1|	-	0.18	11.9	7.2	0.21	11.7	7.2	1.2	1	0	0	1	1	1	0	Replication	protein	C	C-terminal	region
COG2	PF06148.11	gi|345005499|ref|YP_004808352.1|	-	0.19	11.8	4.6	0.15	12.1	3.3	1.4	1	1	0	1	1	1	0	COG	(conserved	oligomeric	Golgi)	complex	component,	COG2
DUF4404	PF14357.6	gi|345005499|ref|YP_004808352.1|	-	0.24	12.0	6.0	0.36	11.5	5.3	1.9	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4404)
DivIC	PF04977.15	gi|345005499|ref|YP_004808352.1|	-	0.25	11.2	8.0	0.053	13.3	3.0	2.1	1	1	1	2	2	2	0	Septum	formation	initiator
YabA	PF06156.13	gi|345005499|ref|YP_004808352.1|	-	0.27	11.9	2.9	0.38	11.4	2.9	1.3	1	1	0	1	1	1	0	Initiation	control	protein	YabA
Fmp27_WPPW	PF10359.9	gi|345005499|ref|YP_004808352.1|	-	0.34	9.7	4.6	0.49	9.2	4.6	1.2	1	0	0	1	1	1	0	RNA	pol	II	promoter	Fmp27	protein	domain
TPR_MLP1_2	PF07926.12	gi|345005499|ref|YP_004808352.1|	-	0.51	10.4	21.5	0.035	14.2	9.0	2.1	1	1	1	2	2	2	0	TPR/MLP1/MLP2-like	protein
Snapin_Pallidin	PF14712.6	gi|345005499|ref|YP_004808352.1|	-	0.63	10.5	6.3	3	8.3	2.3	2.1	1	1	1	2	2	2	0	Snapin/Pallidin
MIF4G_like_2	PF09090.11	gi|345005499|ref|YP_004808352.1|	-	0.86	9.0	8.7	1.3	8.4	8.7	1.4	1	1	0	1	1	1	0	MIF4G	like
DUF724	PF05266.14	gi|345005499|ref|YP_004808352.1|	-	1.2	8.9	9.7	1.5	8.6	9.7	1.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF724)
Seryl_tRNA_N	PF02403.22	gi|345005499|ref|YP_004808352.1|	-	1.5	9.1	9.7	0.58	10.4	4.0	2.1	1	1	1	2	2	2	0	Seryl-tRNA	synthetase	N-terminal	domain
DUF4407	PF14362.6	gi|345005499|ref|YP_004808352.1|	-	1.6	8.0	12.5	2	7.7	12.5	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4407)
AAA_13	PF13166.6	gi|345005499|ref|YP_004808352.1|	-	2.4	6.7	9.3	3.1	6.3	9.3	1.3	1	1	0	1	1	1	0	AAA	domain
ATG16	PF08614.11	gi|345005499|ref|YP_004808352.1|	-	2.8	8.1	15.9	0.1	12.8	7.8	1.9	1	1	1	2	2	2	0	Autophagy	protein	16	(ATG16)
DUF4094	PF13334.6	gi|345005499|ref|YP_004808352.1|	-	4.1	7.9	6.6	0.51	10.8	2.3	1.6	2	0	0	2	2	1	0	Domain	of	unknown	function	(DUF4094)
Peptidase_M20	PF01546.28	gi|345005500|ref|YP_004808353.1|	-	6.7e-27	94.5	1.4	1e-26	94.0	1.4	1.3	1	0	0	1	1	1	1	Peptidase	family	M20/M25/M40
M20_dimer	PF07687.14	gi|345005500|ref|YP_004808353.1|	-	7.3e-23	80.6	0.0	1.6e-22	79.5	0.0	1.6	1	0	0	1	1	1	1	Peptidase	dimerisation	domain
SSF	PF00474.17	gi|345005501|ref|YP_004808354.1|	-	8.7e-37	126.9	35.0	1.1e-36	126.6	35.0	1.1	1	0	0	1	1	1	1	Sodium:solute	symporter	family
Dabb	PF07876.12	gi|345005503|ref|YP_004808356.1|	-	0.1	13.2	0.1	0.15	12.7	0.1	1.3	1	0	0	1	1	1	0	Stress	responsive	A/B	Barrel	Domain
FAA_hydrolase	PF01557.18	gi|345005504|ref|YP_004808357.1|	-	1.6e-62	211.1	0.2	1.8e-62	210.8	0.2	1.0	1	0	0	1	1	1	1	Fumarylacetoacetate	(FAA)	hydrolase	family
DUF2437	PF10370.9	gi|345005504|ref|YP_004808357.1|	-	0.0058	17.5	0.4	0.63	11.0	0.4	2.9	1	1	0	1	1	1	1	Domain	of	unknown	function	(DUF2437)
Peptidase_M24	PF00557.24	gi|345005505|ref|YP_004808358.1|	-	1.6e-55	188.1	1.4	2.3e-55	187.5	1.4	1.2	1	0	0	1	1	1	1	Metallopeptidase	family	M24
Creatinase_N	PF01321.18	gi|345005505|ref|YP_004808358.1|	-	7.6e-10	39.5	0.1	1.7e-09	38.4	0.1	1.5	1	0	0	1	1	1	1	Creatinase/Prolidase	N-terminal	domain
Amidohydro_1	PF01979.20	gi|345005506|ref|YP_004808359.1|	-	1.2e-34	120.2	0.5	1.4e-34	120.0	0.5	1.0	1	0	0	1	1	1	1	Amidohydrolase	family
Amidohydro_3	PF07969.11	gi|345005506|ref|YP_004808359.1|	-	3.2e-11	43.4	12.0	4.9e-09	36.2	7.1	2.4	1	1	1	2	2	2	2	Amidohydrolase	family
Urocanase_C	PF17392.2	gi|345005506|ref|YP_004808359.1|	-	0.026	14.0	0.2	0.086	12.3	0.1	1.9	2	0	0	2	2	2	0	Urocanase	C-terminal	domain
DUF561	PF04481.12	gi|345005506|ref|YP_004808359.1|	-	0.19	10.9	0.0	0.46	9.6	0.0	1.6	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF561)
TOBE	PF03459.17	gi|345005506|ref|YP_004808359.1|	-	1.8	8.9	5.8	1.1	9.6	0.3	2.9	3	0	0	3	3	3	0	TOBE	domain
Peptidase_M24	PF00557.24	gi|345005507|ref|YP_004808360.1|	-	4.3e-35	121.3	0.3	5.5e-35	120.9	0.3	1.1	1	0	0	1	1	1	1	Metallopeptidase	family	M24
Creatinase_N	PF01321.18	gi|345005507|ref|YP_004808360.1|	-	1.5e-17	64.4	0.0	3.3e-17	63.4	0.0	1.6	1	0	0	1	1	1	1	Creatinase/Prolidase	N-terminal	domain
SBP_bac_6	PF13343.6	gi|345005508|ref|YP_004808361.1|	-	7.1e-20	71.4	0.9	9.4e-20	71.1	0.9	1.1	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_8	PF13416.6	gi|345005508|ref|YP_004808361.1|	-	2.4e-19	70.2	1.6	3.2e-19	69.8	1.6	1.1	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
LrgB	PF04172.16	gi|345005508|ref|YP_004808361.1|	-	0.57	9.7	1.6	0.82	9.2	1.6	1.1	1	0	0	1	1	1	0	LrgB-like	family
ABC_tran	PF00005.27	gi|345005509|ref|YP_004808362.1|	-	5.1e-34	117.7	0.0	9.2e-34	116.9	0.0	1.4	1	0	0	1	1	1	1	ABC	transporter
TOBE_2	PF08402.10	gi|345005509|ref|YP_004808362.1|	-	3.3e-16	59.2	3.8	1.9e-14	53.5	0.1	3.4	1	1	2	3	3	3	2	TOBE	domain
AAA_21	PF13304.6	gi|345005509|ref|YP_004808362.1|	-	1.4e-07	31.6	0.0	0.00013	21.9	0.0	2.4	2	0	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA	PF00004.29	gi|345005509|ref|YP_004808362.1|	-	0.0012	19.2	0.0	0.0043	17.5	0.0	2.0	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_16	PF13191.6	gi|345005509|ref|YP_004808362.1|	-	0.0018	18.7	0.0	0.0041	17.5	0.0	1.7	1	1	0	1	1	1	1	AAA	ATPase	domain
TOBE	PF03459.17	gi|345005509|ref|YP_004808362.1|	-	0.0022	18.2	0.9	0.18	12.1	0.1	2.9	2	1	0	2	2	2	1	TOBE	domain
OB_MalK	PF17912.1	gi|345005509|ref|YP_004808362.1|	-	0.0023	18.7	0.1	1.7	9.5	0.0	2.7	2	0	0	2	2	2	1	MalK	OB	fold	domain
Zeta_toxin	PF06414.12	gi|345005509|ref|YP_004808362.1|	-	0.0036	16.6	0.0	0.0093	15.3	0.0	1.6	2	0	0	2	2	2	1	Zeta	toxin
Rad17	PF03215.15	gi|345005509|ref|YP_004808362.1|	-	0.0037	17.2	0.0	0.0056	16.6	0.0	1.2	1	0	0	1	1	1	1	Rad17	P-loop	domain
AAA_5	PF07728.14	gi|345005509|ref|YP_004808362.1|	-	0.0093	16.0	0.2	2.1	8.4	0.1	2.6	2	0	0	2	2	2	1	AAA	domain	(dynein-related	subfamily)
AAA_22	PF13401.6	gi|345005509|ref|YP_004808362.1|	-	0.0098	16.2	1.4	0.038	14.3	1.4	2.0	1	1	0	1	1	1	1	AAA	domain
AAA_33	PF13671.6	gi|345005509|ref|YP_004808362.1|	-	0.035	14.2	0.0	0.1	12.8	0.0	1.9	2	1	0	2	2	2	0	AAA	domain
Adhes-Ig_like	PF09085.10	gi|345005509|ref|YP_004808362.1|	-	0.05	13.7	0.0	0.17	12.0	0.0	1.9	1	0	0	1	1	1	0	Adhesion	molecule,	immunoglobulin-like
RsgA_GTPase	PF03193.16	gi|345005509|ref|YP_004808362.1|	-	0.11	12.4	0.0	0.24	11.3	0.0	1.5	1	0	0	1	1	1	0	RsgA	GTPase
AAA_19	PF13245.6	gi|345005509|ref|YP_004808362.1|	-	0.11	12.8	0.2	1.1	9.5	0.0	2.2	2	0	0	2	2	2	0	AAA	domain
BPD_transp_1	PF00528.22	gi|345005510|ref|YP_004808363.1|	-	1.1e-08	35.0	30.2	1.1e-08	35.0	30.2	2.7	1	1	0	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
DUF2484	PF10658.9	gi|345005510|ref|YP_004808363.1|	-	0.033	14.5	1.0	0.033	14.5	1.0	2.8	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF2484)
BPD_transp_1	PF00528.22	gi|345005511|ref|YP_004808364.1|	-	4.7e-14	52.5	19.5	4.7e-14	52.5	19.5	2.1	1	1	1	2	2	2	2	Binding-protein-dependent	transport	system	inner	membrane	component
Peripla_BP_6	PF13458.6	gi|345005512|ref|YP_004808365.1|	-	1.4e-39	136.8	11.6	1.9e-39	136.3	11.6	1.1	1	0	0	1	1	1	1	Periplasmic	binding	protein
ANF_receptor	PF01094.28	gi|345005512|ref|YP_004808365.1|	-	4.6e-23	81.9	0.0	6.9e-23	81.3	0.0	1.2	1	0	0	1	1	1	1	Receptor	family	ligand	binding	region
Peripla_BP_5	PF13433.6	gi|345005512|ref|YP_004808365.1|	-	1.1e-11	44.4	0.6	2.2e-08	33.5	0.1	2.1	2	0	0	2	2	2	2	Periplasmic	binding	protein	domain
TAT_signal	PF10518.9	gi|345005512|ref|YP_004808365.1|	-	0.0037	17.0	1.2	0.0037	17.0	1.2	2.4	2	0	0	2	2	2	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
BPD_transp_2	PF02653.16	gi|345005513|ref|YP_004808366.1|	-	3.4e-44	151.0	33.9	4e-44	150.8	33.9	1.0	1	0	0	1	1	1	1	Branched-chain	amino	acid	transport	system	/	permease	component
BPD_transp_2	PF02653.16	gi|345005514|ref|YP_004808367.1|	-	1.9e-48	165.0	28.8	1.9e-48	165.0	28.8	1.6	2	0	0	2	2	2	1	Branched-chain	amino	acid	transport	system	/	permease	component
DUF1700	PF08006.11	gi|345005514|ref|YP_004808367.1|	-	4.8	6.7	8.6	1.3	8.6	1.8	2.6	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1700)
ABC_tran	PF00005.27	gi|345005515|ref|YP_004808368.1|	-	3.1e-30	105.5	0.0	4.2e-30	105.0	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|345005515|ref|YP_004808368.1|	-	9.6e-11	42.0	0.0	0.00015	21.7	0.1	2.2	2	0	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
BCA_ABC_TP_C	PF12399.8	gi|345005515|ref|YP_004808368.1|	-	1.2e-08	34.7	0.1	3.3e-08	33.2	0.1	1.8	1	0	0	1	1	1	1	Branched-chain	amino	acid	ATP-binding	cassette	transporter
SMC_N	PF02463.19	gi|345005515|ref|YP_004808368.1|	-	3.8e-05	23.2	0.0	6.4e-05	22.5	0.0	1.3	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_29	PF13555.6	gi|345005515|ref|YP_004808368.1|	-	0.0024	17.6	0.1	0.0051	16.5	0.1	1.5	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_23	PF13476.6	gi|345005515|ref|YP_004808368.1|	-	0.0038	17.8	0.2	0.0061	17.1	0.2	1.2	1	0	0	1	1	1	1	AAA	domain
RsgA_GTPase	PF03193.16	gi|345005515|ref|YP_004808368.1|	-	0.043	13.7	0.0	0.074	13.0	0.0	1.3	1	0	0	1	1	1	0	RsgA	GTPase
AAA_22	PF13401.6	gi|345005515|ref|YP_004808368.1|	-	0.1	12.9	0.0	3.2	8.0	0.0	2.1	2	0	0	2	2	2	0	AAA	domain
AAA_15	PF13175.6	gi|345005515|ref|YP_004808368.1|	-	0.12	12.0	0.0	1.4	8.5	0.0	2.0	2	0	0	2	2	2	0	AAA	ATPase	domain
ABC_tran	PF00005.27	gi|345005516|ref|YP_004808369.1|	-	2.9e-29	102.3	0.0	4e-29	101.9	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|345005516|ref|YP_004808369.1|	-	1.9e-11	44.3	0.0	0.00011	22.2	0.0	2.1	1	1	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_22	PF13401.6	gi|345005516|ref|YP_004808369.1|	-	0.0003	21.1	0.1	0.0028	18.0	0.1	2.0	1	1	0	1	1	1	1	AAA	domain
SMC_N	PF02463.19	gi|345005516|ref|YP_004808369.1|	-	0.00064	19.2	0.1	0.056	12.9	0.0	2.1	2	0	0	2	2	2	1	RecF/RecN/SMC	N	terminal	domain
AAA_29	PF13555.6	gi|345005516|ref|YP_004808369.1|	-	0.0011	18.6	0.0	0.0023	17.6	0.0	1.5	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_30	PF13604.6	gi|345005516|ref|YP_004808369.1|	-	0.0015	18.3	0.1	0.0061	16.3	0.1	1.8	1	1	0	1	1	1	1	AAA	domain
AAA_23	PF13476.6	gi|345005516|ref|YP_004808369.1|	-	0.0024	18.4	0.0	0.0036	17.8	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
AAA_15	PF13175.6	gi|345005516|ref|YP_004808369.1|	-	0.0037	17.0	0.0	0.017	14.9	0.1	1.8	2	0	0	2	2	2	1	AAA	ATPase	domain
AAA_16	PF13191.6	gi|345005516|ref|YP_004808369.1|	-	0.012	16.0	0.0	0.016	15.6	0.0	1.4	1	1	0	1	1	1	0	AAA	ATPase	domain
AAA_27	PF13514.6	gi|345005516|ref|YP_004808369.1|	-	0.018	14.6	0.0	0.035	13.7	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
IstB_IS21	PF01695.17	gi|345005516|ref|YP_004808369.1|	-	0.032	14.0	0.0	0.15	11.8	0.0	1.8	2	0	0	2	2	2	0	IstB-like	ATP	binding	protein
AAA_24	PF13479.6	gi|345005516|ref|YP_004808369.1|	-	0.038	13.7	0.0	0.053	13.2	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
AAA_33	PF13671.6	gi|345005516|ref|YP_004808369.1|	-	0.053	13.7	0.0	0.073	13.2	0.0	1.6	1	1	0	1	1	1	0	AAA	domain
Zeta_toxin	PF06414.12	gi|345005516|ref|YP_004808369.1|	-	0.082	12.2	0.0	0.14	11.4	0.0	1.3	1	0	0	1	1	1	0	Zeta	toxin
AAA	PF00004.29	gi|345005516|ref|YP_004808369.1|	-	0.1	13.1	0.4	1.5	9.3	0.4	2.2	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
RsgA_GTPase	PF03193.16	gi|345005516|ref|YP_004808369.1|	-	0.11	12.4	0.1	0.29	11.0	0.0	1.7	2	0	0	2	2	2	0	RsgA	GTPase
Mg_chelatase	PF01078.21	gi|345005516|ref|YP_004808369.1|	-	0.12	11.7	0.0	0.29	10.5	0.0	1.6	2	0	0	2	2	2	0	Magnesium	chelatase,	subunit	ChlI
EamA	PF00892.20	gi|345005517|ref|YP_004808370.1|	-	1e-42	145.5	34.1	4e-22	78.9	17.3	2.0	2	0	0	2	2	2	2	EamA-like	transporter	family
ATP-synt_J	PF04911.12	gi|345005517|ref|YP_004808370.1|	-	0.81	9.3	2.3	18	5.0	0.6	3.2	3	0	0	3	3	3	0	ATP	synthase	j	chain
HATPase_c_3	PF13589.6	gi|345005518|ref|YP_004808371.1|	-	4.2e-06	26.6	0.0	9.7e-06	25.5	0.0	1.6	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
BpuSI_N	PF15516.6	gi|345005518|ref|YP_004808371.1|	-	0.029	14.3	0.0	0.052	13.5	0.0	1.3	1	0	0	1	1	1	0	BpuSI	N-terminal	domain
SprT-like	PF10263.9	gi|345005518|ref|YP_004808371.1|	-	0.03	14.2	0.0	0.062	13.2	0.0	1.6	1	0	0	1	1	1	0	SprT-like	family
NAD_binding_7	PF13241.6	gi|345005518|ref|YP_004808371.1|	-	0.033	14.6	0.6	0.38	11.2	0.2	2.4	2	0	0	2	2	2	0	Putative	NAD(P)-binding
SecD-TM1	PF13721.6	gi|345005518|ref|YP_004808371.1|	-	0.15	12.5	0.3	1	9.8	0.2	2.4	2	1	0	2	2	2	0	SecD	export	protein	N-terminal	TM	region
Acylphosphatase	PF00708.18	gi|345005519|ref|YP_004808372.1|	-	1.1e-25	89.8	0.3	1.2e-25	89.7	0.3	1.0	1	0	0	1	1	1	1	Acylphosphatase
PGM_PMM_I	PF02878.16	gi|345005520|ref|YP_004808373.1|	-	6e-31	107.0	0.8	1.2e-30	106.0	0.8	1.5	1	0	0	1	1	1	1	Phosphoglucomutase/phosphomannomutase,	alpha/beta/alpha	domain	I
PGM_PMM_II	PF02879.16	gi|345005520|ref|YP_004808373.1|	-	6.5e-22	78.1	2.5	1.2e-21	77.2	0.1	2.6	3	0	0	3	3	3	1	Phosphoglucomutase/phosphomannomutase,	alpha/beta/alpha	domain	II
PGM_PMM_IV	PF00408.20	gi|345005520|ref|YP_004808373.1|	-	1.7e-10	40.9	1.9	8.3e-10	38.7	0.0	2.9	4	0	0	4	4	4	1	Phosphoglucomutase/phosphomannomutase,	C-terminal	domain
PGM_PMM_III	PF02880.16	gi|345005520|ref|YP_004808373.1|	-	0.0021	18.2	0.0	0.0052	17.0	0.0	1.7	1	0	0	1	1	1	1	Phosphoglucomutase/phosphomannomutase,	alpha/beta/alpha	domain	III
FlgD_ig	PF13860.6	gi|345005520|ref|YP_004808373.1|	-	0.11	12.4	0.8	1.8	8.5	0.1	3.0	2	1	1	3	3	3	0	FlgD	Ig-like	domain
DUF4115	PF13464.6	gi|345005520|ref|YP_004808373.1|	-	0.11	12.7	0.3	32	4.8	0.0	3.4	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF4115)
ABC_tran	PF00005.27	gi|345005521|ref|YP_004808374.1|	-	2.6e-44	151.1	0.0	8.9e-29	100.7	0.0	2.2	2	0	0	2	2	2	2	ABC	transporter
AAA_21	PF13304.6	gi|345005521|ref|YP_004808374.1|	-	1.9e-08	34.5	0.5	0.0029	17.5	0.1	2.2	1	1	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_29	PF13555.6	gi|345005521|ref|YP_004808374.1|	-	5.6e-05	22.8	0.1	0.025	14.3	0.0	2.8	3	0	0	3	3	3	2	P-loop	containing	region	of	AAA	domain
Bac_DnaA	PF00308.18	gi|345005521|ref|YP_004808374.1|	-	0.0028	17.6	0.3	0.01	15.7	0.0	2.0	2	0	0	2	2	2	1	Bacterial	dnaA	protein
RsgA_GTPase	PF03193.16	gi|345005521|ref|YP_004808374.1|	-	0.0037	17.2	0.1	0.086	12.7	0.0	2.7	3	0	0	3	3	3	1	RsgA	GTPase
AAA_23	PF13476.6	gi|345005521|ref|YP_004808374.1|	-	0.0059	17.1	0.0	0.017	15.7	0.0	1.5	1	1	0	1	1	1	1	AAA	domain
AAA_30	PF13604.6	gi|345005521|ref|YP_004808374.1|	-	0.0067	16.2	1.5	0.09	12.5	0.0	2.6	3	0	0	3	3	3	1	AAA	domain
SMC_N	PF02463.19	gi|345005521|ref|YP_004808374.1|	-	0.035	13.5	0.1	0.88	9.0	0.0	2.7	2	1	0	2	2	2	0	RecF/RecN/SMC	N	terminal	domain
AAA_27	PF13514.6	gi|345005521|ref|YP_004808374.1|	-	0.046	13.3	0.0	0.092	12.3	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
AAA_15	PF13175.6	gi|345005521|ref|YP_004808374.1|	-	0.067	12.9	0.0	0.66	9.6	0.0	1.9	2	0	0	2	2	2	0	AAA	ATPase	domain
PduV-EutP	PF10662.9	gi|345005521|ref|YP_004808374.1|	-	0.2	11.4	0.0	0.7	9.6	0.0	1.8	2	0	0	2	2	2	0	Ethanolamine	utilisation	-	propanediol	utilisation
BPD_transp_2	PF02653.16	gi|345005522|ref|YP_004808375.1|	-	2.1e-34	118.9	35.5	2.1e-34	118.9	35.5	1.8	2	0	0	2	2	2	1	Branched-chain	amino	acid	transport	system	/	permease	component
BPD_transp_2	PF02653.16	gi|345005523|ref|YP_004808376.1|	-	2.6e-28	98.9	54.2	9.2e-27	93.9	46.0	2.8	2	1	0	2	2	2	1	Branched-chain	amino	acid	transport	system	/	permease	component
FAD_binding_2	PF00890.24	gi|345005524|ref|YP_004808377.1|	-	4e-13	49.2	0.9	5.4e-07	29.0	0.2	2.2	2	0	0	2	2	2	2	FAD	binding	domain
Trp_halogenase	PF04820.14	gi|345005524|ref|YP_004808377.1|	-	7.3e-11	41.6	0.3	6.1e-07	28.7	0.0	2.2	2	0	0	2	2	2	2	Tryptophan	halogenase
FAD_oxidored	PF12831.7	gi|345005524|ref|YP_004808377.1|	-	3.1e-10	40.0	1.9	5.9e-05	22.6	0.9	2.2	2	0	0	2	2	2	2	FAD	dependent	oxidoreductase
DAO	PF01266.24	gi|345005524|ref|YP_004808377.1|	-	6.4e-10	39.1	6.1	8.4e-05	22.3	0.5	2.4	2	1	0	2	2	2	2	FAD	dependent	oxidoreductase
FAD_binding_3	PF01494.19	gi|345005524|ref|YP_004808377.1|	-	2.3e-09	37.0	1.2	9.9e-09	34.9	1.2	2.1	1	1	0	1	1	1	1	FAD	binding	domain
HI0933_like	PF03486.14	gi|345005524|ref|YP_004808377.1|	-	4e-06	25.8	0.3	0.00025	19.9	0.1	2.1	2	0	0	2	2	2	1	HI0933-like	protein
Pyr_redox	PF00070.27	gi|345005524|ref|YP_004808377.1|	-	4.5e-06	27.1	0.2	0.0048	17.4	0.2	2.5	2	0	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_binding_8	PF13450.6	gi|345005524|ref|YP_004808377.1|	-	7.3e-06	26.1	0.2	7.3e-06	26.1	0.2	2.4	2	0	0	2	2	2	1	NAD(P)-binding	Rossmann-like	domain
GIDA	PF01134.22	gi|345005524|ref|YP_004808377.1|	-	2e-05	23.9	1.7	4e-05	22.9	1.7	1.5	1	1	0	1	1	1	1	Glucose	inhibited	division	protein	A
Pyr_redox_2	PF07992.14	gi|345005524|ref|YP_004808377.1|	-	3.2e-05	23.3	1.3	0.00023	20.5	1.3	2.0	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Thi4	PF01946.17	gi|345005524|ref|YP_004808377.1|	-	5.3e-05	22.6	0.2	0.00014	21.2	0.1	1.7	2	0	0	2	2	2	1	Thi4	family
Lycopene_cycl	PF05834.12	gi|345005524|ref|YP_004808377.1|	-	0.00025	20.2	2.0	0.18	10.8	0.3	2.3	2	1	0	2	2	2	2	Lycopene	cyclase	protein
AlaDh_PNT_C	PF01262.21	gi|345005524|ref|YP_004808377.1|	-	0.039	13.2	1.0	0.062	12.6	0.1	1.7	2	0	0	2	2	2	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
Pyr_redox_3	PF13738.6	gi|345005524|ref|YP_004808377.1|	-	0.097	11.9	0.2	0.27	10.4	0.1	1.6	2	0	0	2	2	2	0	Pyridine	nucleotide-disulphide	oxidoreductase
3HCDH_N	PF02737.18	gi|345005524|ref|YP_004808377.1|	-	0.15	11.9	0.0	0.25	11.2	0.0	1.4	1	0	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
ApbA	PF02558.16	gi|345005524|ref|YP_004808377.1|	-	0.17	11.5	0.0	0.33	10.6	0.0	1.5	1	0	0	1	1	1	0	Ketopantoate	reductase	PanE/ApbA
Peptidase_M20	PF01546.28	gi|345005525|ref|YP_004808378.1|	-	2.3e-20	73.2	4.8	6.9e-20	71.6	4.8	1.8	1	1	0	1	1	1	1	Peptidase	family	M20/M25/M40
M20_dimer	PF07687.14	gi|345005525|ref|YP_004808378.1|	-	8.7e-14	51.4	0.4	8.7e-14	51.4	0.4	1.8	2	0	0	2	2	2	1	Peptidase	dimerisation	domain
Ribosomal_S10	PF00338.22	gi|345005526|ref|YP_004808379.1|	-	6.5e-10	39.1	0.0	7.4e-10	38.9	0.0	1.0	1	0	0	1	1	1	1	Ribosomal	protein	S10p/S20e
NUDIX	PF00293.28	gi|345005527|ref|YP_004808380.1|	-	2.9e-16	59.7	0.5	3.7e-16	59.4	0.5	1.1	1	0	0	1	1	1	1	NUDIX	domain
AAA_17	PF13207.6	gi|345005527|ref|YP_004808380.1|	-	0.0071	16.8	0.0	0.0087	16.5	0.0	1.3	1	1	0	1	1	1	1	AAA	domain
PaaX	PF07848.12	gi|345005528|ref|YP_004808381.1|	-	0.16	12.2	0.0	0.37	11.0	0.0	1.6	1	0	0	1	1	1	0	PaaX-like	protein
NTP_transferase	PF00483.23	gi|345005529|ref|YP_004808382.1|	-	8.4e-40	136.9	0.0	1.2e-39	136.3	0.0	1.2	1	0	0	1	1	1	1	Nucleotidyl	transferase
NTP_transf_3	PF12804.7	gi|345005529|ref|YP_004808382.1|	-	2.3e-16	60.5	0.5	5.3e-16	59.4	0.5	1.6	1	0	0	1	1	1	1	MobA-like	NTP	transferase	domain
Hexapep	PF00132.24	gi|345005529|ref|YP_004808382.1|	-	4.8e-11	41.9	11.2	0.0014	18.2	0.2	4.6	2	1	3	5	5	5	4	Bacterial	transferase	hexapeptide	(six	repeats)
IspD	PF01128.19	gi|345005529|ref|YP_004808382.1|	-	0.00079	19.2	0.0	0.0011	18.7	0.0	1.2	1	0	0	1	1	1	1	2-C-methyl-D-erythritol	4-phosphate	cytidylyltransferase
Hexapep_2	PF14602.6	gi|345005529|ref|YP_004808382.1|	-	0.25	11.1	9.9	0.93	9.3	0.1	4.2	4	0	0	4	4	4	0	Hexapeptide	repeat	of	succinyl-transferase
Pyr_redox_2	PF07992.14	gi|345005530|ref|YP_004808383.1|	-	5.6e-30	104.6	0.1	6.9e-30	104.3	0.1	1.0	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_3	PF13738.6	gi|345005530|ref|YP_004808383.1|	-	3.2e-14	52.9	0.0	3.1e-09	36.5	0.0	2.2	1	1	1	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
DAO	PF01266.24	gi|345005530|ref|YP_004808383.1|	-	5.1e-07	29.6	3.4	0.0003	20.5	2.1	2.2	1	1	0	2	2	2	2	FAD	dependent	oxidoreductase
Pyr_redox	PF00070.27	gi|345005530|ref|YP_004808383.1|	-	1.9e-06	28.3	0.1	0.03	14.9	0.1	2.5	2	0	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
K_oxygenase	PF13434.6	gi|345005530|ref|YP_004808383.1|	-	1.5e-05	24.3	0.0	6.1e-05	22.3	0.0	1.8	2	0	0	2	2	2	1	L-lysine	6-monooxygenase	(NADPH-requiring)
HI0933_like	PF03486.14	gi|345005530|ref|YP_004808383.1|	-	1.6e-05	23.8	1.0	0.00095	18.0	0.4	2.1	2	0	0	2	2	2	1	HI0933-like	protein
NAD_binding_8	PF13450.6	gi|345005530|ref|YP_004808383.1|	-	7.6e-05	22.9	0.4	0.00018	21.7	0.4	1.7	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
FAD_binding_3	PF01494.19	gi|345005530|ref|YP_004808383.1|	-	0.0001	21.7	0.4	0.00016	21.0	0.4	1.3	1	0	0	1	1	1	1	FAD	binding	domain
GIDA	PF01134.22	gi|345005530|ref|YP_004808383.1|	-	0.00018	20.7	0.9	0.0003	20.0	0.7	1.5	1	1	0	1	1	1	1	Glucose	inhibited	division	protein	A
FAD_oxidored	PF12831.7	gi|345005530|ref|YP_004808383.1|	-	0.00049	19.6	0.5	0.00049	19.6	0.5	1.6	2	0	0	2	2	2	1	FAD	dependent	oxidoreductase
FAD_binding_2	PF00890.24	gi|345005530|ref|YP_004808383.1|	-	0.0018	17.4	3.7	0.0023	17.1	0.3	2.4	2	1	1	3	3	3	1	FAD	binding	domain
AlaDh_PNT_C	PF01262.21	gi|345005530|ref|YP_004808383.1|	-	0.039	13.3	0.2	0.075	12.3	0.2	1.5	1	0	0	1	1	1	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
Thi4	PF01946.17	gi|345005530|ref|YP_004808383.1|	-	0.044	13.0	0.2	0.33	10.1	0.1	2.1	2	0	0	2	2	2	0	Thi4	family
NAD_binding_9	PF13454.6	gi|345005530|ref|YP_004808383.1|	-	0.12	12.4	3.9	2.4	8.1	0.0	2.7	3	0	0	3	3	3	0	FAD-NAD(P)-binding
UDPG_MGDP_dh_N	PF03721.14	gi|345005530|ref|YP_004808383.1|	-	0.14	11.7	0.1	0.25	10.9	0.1	1.5	1	0	0	1	1	1	0	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
zf-C2H2_jaz	PF12171.8	gi|345005530|ref|YP_004808383.1|	-	0.29	11.5	0.3	0.29	11.5	0.3	1.7	2	0	0	2	2	2	0	Zinc-finger	double-stranded	RNA-binding
Lactamase_B	PF00753.27	gi|345005531|ref|YP_004808384.1|	-	3.8e-25	89.1	3.6	9.6e-25	87.7	3.6	1.6	1	0	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Lactamase_B_2	PF12706.7	gi|345005531|ref|YP_004808384.1|	-	1.4e-07	31.3	1.2	2.5e-06	27.1	1.2	2.3	1	1	0	1	1	1	1	Beta-lactamase	superfamily	domain
DnaJ	PF00226.31	gi|345005532|ref|YP_004808385.1|	-	2.5e-19	69.2	0.2	3.7e-19	68.6	0.2	1.3	1	0	0	1	1	1	1	DnaJ	domain
Macoilin	PF09726.9	gi|345005532|ref|YP_004808385.1|	-	0.0081	14.8	5.0	0.0097	14.5	5.0	1.1	1	0	0	1	1	1	1	Macoilin	family
IHABP4_N	PF16174.5	gi|345005532|ref|YP_004808385.1|	-	0.085	13.5	4.6	0.16	12.5	4.6	1.5	1	0	0	1	1	1	0	Intracellular	hyaluronan-binding	protein	4	N-terminal
Presenilin	PF01080.17	gi|345005532|ref|YP_004808385.1|	-	0.29	9.8	5.3	0.44	9.3	5.3	1.3	1	0	0	1	1	1	0	Presenilin
DUF572	PF04502.13	gi|345005532|ref|YP_004808385.1|	-	0.67	9.5	8.4	0.88	9.1	8.4	1.1	1	0	0	1	1	1	0	Family	of	unknown	function	(DUF572)
SRP-alpha_N	PF04086.13	gi|345005532|ref|YP_004808385.1|	-	1.2	9.0	11.8	1.7	8.5	11.8	1.1	1	0	0	1	1	1	0	Signal	recognition	particle,	alpha	subunit,	N-terminal
SPX	PF03105.19	gi|345005532|ref|YP_004808385.1|	-	2.1	8.2	16.6	2.7	7.8	16.6	1.1	1	0	0	1	1	1	0	SPX	domain
GREB1	PF15782.5	gi|345005532|ref|YP_004808385.1|	-	2.8	4.9	6.6	3.3	4.7	6.6	1.0	1	0	0	1	1	1	0	Gene	regulated	by	oestrogen	in	breast	cancer
Plasmodium_Vir	PF05795.11	gi|345005532|ref|YP_004808385.1|	-	9.7	5.5	7.5	12	5.1	7.5	1.2	1	0	0	1	1	1	0	Plasmodium	vivax	Vir	protein
UDG	PF03167.19	gi|345005533|ref|YP_004808386.1|	-	2.1e-13	50.6	0.0	2.5e-13	50.3	0.0	1.1	1	0	0	1	1	1	1	Uracil	DNA	glycosylase	superfamily
EccE	PF11203.8	gi|345005533|ref|YP_004808386.1|	-	0.0063	16.8	0.8	0.014	15.7	0.2	1.8	1	1	0	2	2	2	1	Putative	type	VII	ESX	secretion	system	translocon,	EccE
DUF4918	PF16265.5	gi|345005533|ref|YP_004808386.1|	-	0.08	12.5	0.0	0.12	11.9	0.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4918)
AlkA_N	PF06029.11	gi|345005534|ref|YP_004808387.1|	-	0.051	13.8	0.0	0.08	13.2	0.0	1.3	1	0	0	1	1	1	0	AlkA	N-terminal	domain
HD	PF01966.22	gi|345005535|ref|YP_004808388.1|	-	4.7e-10	39.8	1.5	1.1e-09	38.6	1.5	1.6	1	0	0	1	1	1	1	HD	domain
AhpC-TSA	PF00578.21	gi|345005536|ref|YP_004808389.1|	-	3.6e-26	91.5	0.0	4.1e-26	91.3	0.0	1.0	1	0	0	1	1	1	1	AhpC/TSA	family
Redoxin	PF08534.10	gi|345005536|ref|YP_004808389.1|	-	2.1e-19	69.7	0.0	2.7e-19	69.3	0.0	1.1	1	0	0	1	1	1	1	Redoxin
AhpC-TSA_2	PF13911.6	gi|345005536|ref|YP_004808389.1|	-	0.011	15.8	0.0	0.62	10.2	0.0	2.1	2	0	0	2	2	2	0	AhpC/TSA	antioxidant	enzyme
DUF899	PF05988.12	gi|345005536|ref|YP_004808389.1|	-	0.048	13.2	0.0	0.061	12.8	0.0	1.1	1	0	0	1	1	1	0	Bacterial	protein	of	unknown	function	(DUF899)
MttA_Hcf106	PF02416.16	gi|345005537|ref|YP_004808390.1|	-	4.8e-15	54.6	2.4	8e-15	53.9	2.4	1.5	1	1	0	1	1	1	1	mttA/Hcf106	family
DUF4834	PF16118.5	gi|345005537|ref|YP_004808390.1|	-	0.0022	18.9	0.1	0.0031	18.4	0.1	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4834)
TRAP_alpha	PF03896.16	gi|345005537|ref|YP_004808390.1|	-	0.026	13.8	2.0	0.031	13.5	2.0	1.0	1	0	0	1	1	1	0	Translocon-associated	protein	(TRAP),	alpha	subunit
T2SSE	PF00437.20	gi|345005538|ref|YP_004808391.1|	-	4.6e-43	147.3	0.0	7.5e-43	146.5	0.0	1.2	1	0	0	1	1	1	1	Type	II/IV	secretion	system	protein
AAA_29	PF13555.6	gi|345005538|ref|YP_004808391.1|	-	0.0045	16.7	0.1	0.0086	15.8	0.1	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
FtsK_SpoIIIE	PF01580.18	gi|345005538|ref|YP_004808391.1|	-	0.14	11.5	0.0	1.6	8.0	0.0	2.2	2	0	0	2	2	2	0	FtsK/SpoIIIE	family
T2SSF	PF00482.23	gi|345005539|ref|YP_004808392.1|	-	6.3e-26	90.8	8.0	2.4e-14	53.4	2.1	3.3	4	0	0	4	4	4	2	Type	II	secretion	system	(T2SS),	protein	F
Ctr	PF04145.15	gi|345005539|ref|YP_004808392.1|	-	0.098	13.3	0.3	0.098	13.3	0.3	2.2	2	0	0	2	2	2	0	Ctr	copper	transporter	family
GrpE	PF01025.19	gi|345005539|ref|YP_004808392.1|	-	0.18	11.5	1.3	0.42	10.3	1.3	1.5	1	0	0	1	1	1	0	GrpE
E1-E2_ATPase	PF00122.20	gi|345005539|ref|YP_004808392.1|	-	9.2	5.8	9.3	11	5.5	0.0	3.3	4	0	0	4	4	4	0	E1-E2	ATPase
PAS_8	PF13188.7	gi|345005541|ref|YP_004808394.1|	-	0.05	13.6	0.0	7.8	6.6	0.0	2.4	2	0	0	2	2	2	0	PAS	domain
PAS_9	PF13426.7	gi|345005541|ref|YP_004808394.1|	-	0.16	12.2	0.0	23	5.3	0.0	2.4	2	1	0	2	2	2	0	PAS	domain
CIDE-N	PF02017.15	gi|345005542|ref|YP_004808395.1|	-	0.1	12.6	0.1	0.26	11.3	0.1	1.7	1	0	0	1	1	1	0	CIDE-N	domain
Pilin_N	PF07790.11	gi|345005544|ref|YP_004808397.1|	-	0.055	14.4	3.1	0.29	12.1	1.0	2.8	2	0	0	2	2	2	0	Archaeal	Type	IV	pilin,	N-terminal
EpuA	PF11772.8	gi|345005544|ref|YP_004808397.1|	-	0.67	9.7	5.4	1.2	8.8	5.4	1.4	1	0	0	1	1	1	0	DNA-directed	RNA	polymerase	subunit	beta
Amidase	PF01425.21	gi|345005545|ref|YP_004808398.1|	-	6.6e-97	325.3	0.0	8.2e-97	325.0	0.0	1.1	1	0	0	1	1	1	1	Amidase
PfkB	PF00294.24	gi|345005546|ref|YP_004808399.1|	-	2.7e-34	118.8	0.8	1.4e-33	116.5	0.4	2.1	2	1	0	2	2	2	1	pfkB	family	carbohydrate	kinase
XdhC_C	PF13478.6	gi|345005546|ref|YP_004808399.1|	-	0.078	13.5	0.0	0.15	12.5	0.0	1.4	1	0	0	1	1	1	0	XdhC	Rossmann	domain
Carb_kinase	PF01256.17	gi|345005546|ref|YP_004808399.1|	-	0.083	12.3	0.0	0.17	11.3	0.0	1.5	1	1	0	1	1	1	0	Carbohydrate	kinase
Gly-zipper_YMGG	PF13441.6	gi|345005547|ref|YP_004808400.1|	-	0.00045	19.9	19.2	0.00055	19.6	19.2	1.1	1	0	0	1	1	1	1	YMGG-like	Gly-zipper
Gly-zipper_Omp	PF13488.6	gi|345005547|ref|YP_004808400.1|	-	0.037	14.0	9.5	0.037	14.0	9.5	1.9	1	1	1	2	2	2	0	Glycine	zipper
Rick_17kDa_Anti	PF05433.15	gi|345005547|ref|YP_004808400.1|	-	0.052	13.4	20.0	0.069	13.0	20.0	1.2	1	0	0	1	1	1	0	Glycine	zipper	2TM	domain
DUF3169	PF11368.8	gi|345005547|ref|YP_004808400.1|	-	0.37	10.3	0.4	0.39	10.2	0.4	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3169)
TraT	PF05818.12	gi|345005547|ref|YP_004808400.1|	-	0.72	9.5	3.2	0.81	9.3	3.2	1.1	1	0	0	1	1	1	0	Enterobacterial	TraT	complement	resistance	protein
GSDH	PF07995.11	gi|345005548|ref|YP_004808401.1|	-	2.7e-40	138.7	0.1	3.3e-40	138.4	0.1	1.1	1	0	0	1	1	1	1	Glucose	/	Sorbosone	dehydrogenase
UCR_Fe-S_N	PF10399.9	gi|345005548|ref|YP_004808401.1|	-	0.00017	20.9	0.2	0.00036	19.8	0.2	1.6	1	0	0	1	1	1	1	Ubiquitinol-cytochrome	C	reductase	Fe-S	subunit	TAT	signal
TAT_signal	PF10518.9	gi|345005548|ref|YP_004808401.1|	-	0.011	15.5	6.1	0.022	14.6	6.1	1.5	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
Pilin_N	PF07790.11	gi|345005550|ref|YP_004808403.1|	-	6e-25	88.0	3.8	6e-25	88.0	3.8	1.7	2	0	0	2	2	2	1	Archaeal	Type	IV	pilin,	N-terminal
DDE_Tnp_1	PF01609.21	gi|345005551|ref|YP_004808404.1|	-	8.2e-23	81.2	0.0	1.2e-22	80.7	0.0	1.1	1	0	0	1	1	1	1	Transposase	DDE	domain
DDE_Tnp_1_6	PF13751.6	gi|345005551|ref|YP_004808404.1|	-	0.0015	18.7	0.0	0.0027	17.9	0.0	1.3	1	0	0	1	1	1	1	Transposase	DDE	domain
zinc_ribbon_4	PF13717.6	gi|345005552|ref|YP_004808405.1|	-	0.17	11.8	1.1	2.9	7.9	0.1	2.6	2	0	0	2	2	2	0	zinc-ribbon	domain
DUF35_N	PF12172.8	gi|345005552|ref|YP_004808405.1|	-	0.39	10.6	4.1	9.5	6.2	0.5	2.6	2	0	0	2	2	2	0	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
zinc_ribbon_2	PF13240.6	gi|345005552|ref|YP_004808405.1|	-	0.7	9.7	3.4	3.1	7.6	0.1	2.5	2	0	0	2	2	2	0	zinc-ribbon	domain
Phage_Coat_B	PF05356.11	gi|345005555|ref|YP_004808408.1|	-	0.065	13.1	1.4	0.2	11.6	0.0	2.0	1	1	1	2	2	2	0	Phage	Coat	protein	B
Aldedh	PF00171.22	gi|345005556|ref|YP_004808409.1|	-	8.5e-17	60.8	0.2	8.5e-17	60.8	0.2	1.3	2	0	0	2	2	2	1	Aldehyde	dehydrogenase	family
AMP-binding_C_2	PF14535.6	gi|345005558|ref|YP_004808411.1|	-	4.3e-22	78.2	0.1	8.9e-22	77.2	0.1	1.6	1	0	0	1	1	1	1	AMP-binding	enzyme	C-terminal	domain
AMP-binding	PF00501.28	gi|345005558|ref|YP_004808411.1|	-	1.3e-17	63.5	0.1	2.1e-17	62.9	0.1	1.4	1	1	0	1	1	1	1	AMP-binding	enzyme
TAD2	PF18521.1	gi|345005558|ref|YP_004808411.1|	-	0.1	12.6	0.8	1.9	8.6	0.0	2.9	2	0	0	2	2	2	0	Transactivation	domain	2
LuxE	PF04443.12	gi|345005558|ref|YP_004808411.1|	-	0.12	11.4	0.0	0.66	8.9	0.0	1.9	2	0	0	2	2	2	0	Acyl-protein	synthetase,	LuxE
VCH_CASS14	PF18315.1	gi|345005559|ref|YP_004808412.1|	-	0.096	12.7	0.0	22	5.2	0.0	2.6	2	0	0	2	2	2	0	Integron	cassette	protein	VCH_CASS1	chain
PcrB	PF01884.17	gi|345005560|ref|YP_004808413.1|	-	2e-22	79.8	0.0	2.1e-21	76.4	0.0	2.0	1	1	0	1	1	1	1	PcrB	family
His_biosynth	PF00977.21	gi|345005560|ref|YP_004808413.1|	-	0.0027	17.2	0.1	0.0055	16.2	0.1	1.4	1	0	0	1	1	1	1	Histidine	biosynthesis	protein
FMN_dh	PF01070.18	gi|345005560|ref|YP_004808413.1|	-	0.0063	15.6	1.2	0.011	14.7	1.2	1.3	1	0	0	1	1	1	1	FMN-dependent	dehydrogenase
DUF3613	PF12266.8	gi|345005560|ref|YP_004808413.1|	-	0.026	14.3	0.1	0.076	12.8	0.1	1.8	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3613)
DUF1508	PF07411.12	gi|345005562|ref|YP_004808415.1|	-	1e-21	76.5	0.5	1.3e-21	76.1	0.5	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1508)
4HBT_2	PF13279.6	gi|345005563|ref|YP_004808416.1|	-	1.8e-17	64.0	0.0	2.2e-17	63.7	0.0	1.0	1	0	0	1	1	1	1	Thioesterase-like	superfamily
4HBT	PF03061.22	gi|345005563|ref|YP_004808416.1|	-	4.1e-12	46.3	0.0	5.4e-12	45.9	0.0	1.2	1	0	0	1	1	1	1	Thioesterase	superfamily
Acyl-ACP_TE	PF01643.17	gi|345005563|ref|YP_004808416.1|	-	1.1e-11	44.6	0.6	2.3e-06	27.1	0.3	2.0	1	1	1	2	2	2	2	Acyl-ACP	thioesterase
TFIIB	PF00382.19	gi|345005564|ref|YP_004808417.1|	-	7.9e-05	22.6	0.1	0.00019	21.4	0.1	1.6	1	1	0	1	1	1	1	Transcription	factor	TFIIB	repeat
HTH_28	PF13518.6	gi|345005564|ref|YP_004808417.1|	-	0.0094	16.1	0.2	0.019	15.1	0.1	1.6	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_Tnp_ISL3	PF13542.6	gi|345005564|ref|YP_004808417.1|	-	0.11	11.9	0.3	0.23	10.9	0.3	1.6	1	0	0	1	1	1	0	Helix-turn-helix	domain	of	transposase	family	ISL3
CTP_transf_like	PF01467.26	gi|345005565|ref|YP_004808418.1|	-	3.4e-13	50.0	0.0	4.1e-13	49.7	0.0	1.1	1	0	0	1	1	1	1	Cytidylyltransferase-like
FAD_syn	PF06574.12	gi|345005565|ref|YP_004808418.1|	-	0.0014	18.6	0.4	0.021	14.7	0.2	2.3	1	1	0	2	2	2	1	FAD	synthetase
TrmB	PF01978.19	gi|345005566|ref|YP_004808419.1|	-	2.2e-06	27.4	0.1	3.3e-06	26.9	0.1	1.2	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_24	PF13412.6	gi|345005566|ref|YP_004808419.1|	-	4.7e-06	26.1	0.0	7.4e-06	25.4	0.0	1.3	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
GntR	PF00392.21	gi|345005566|ref|YP_004808419.1|	-	0.0093	15.6	0.1	0.019	14.6	0.1	1.5	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	gntR	family
HTH_IclR	PF09339.10	gi|345005566|ref|YP_004808419.1|	-	0.022	14.6	0.0	0.039	13.7	0.0	1.4	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
HTH_20	PF12840.7	gi|345005566|ref|YP_004808419.1|	-	0.022	14.8	0.1	0.042	13.9	0.1	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_5	PF01022.20	gi|345005566|ref|YP_004808419.1|	-	0.033	14.0	0.0	0.056	13.3	0.0	1.3	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
HTH_AsnC-type	PF13404.6	gi|345005566|ref|YP_004808419.1|	-	0.06	13.2	0.0	0.12	12.2	0.0	1.5	1	0	0	1	1	1	0	AsnC-type	helix-turn-helix	domain
DUF3369	PF11849.8	gi|345005566|ref|YP_004808419.1|	-	0.064	13.5	0.0	0.16	12.2	0.0	1.6	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF3369)
HTH_Crp_2	PF13545.6	gi|345005566|ref|YP_004808419.1|	-	0.14	12.1	0.0	0.25	11.4	0.0	1.3	1	0	0	1	1	1	0	Crp-like	helix-turn-helix	domain
SprB	PF13573.6	gi|345005566|ref|YP_004808419.1|	-	0.38	10.6	4.8	0.16	11.8	1.3	2.0	2	0	0	2	2	2	0	SprB	repeat
HATPase_c	PF02518.26	gi|345005567|ref|YP_004808420.1|	-	1.8e-16	60.6	0.1	3.5e-16	59.7	0.1	1.4	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HisKA	PF00512.25	gi|345005567|ref|YP_004808420.1|	-	4.8e-11	42.5	0.3	4.8e-11	42.5	0.3	2.4	3	0	0	3	3	3	1	His	Kinase	A	(phospho-acceptor)	domain
PAS_4	PF08448.10	gi|345005567|ref|YP_004808420.1|	-	2.2e-09	37.5	0.6	1.1e-08	35.3	0.4	2.4	2	0	0	2	2	2	1	PAS	fold
GAF_2	PF13185.6	gi|345005567|ref|YP_004808420.1|	-	8.4e-09	35.8	0.9	4.8e-08	33.4	0.1	2.4	2	0	0	2	2	2	1	GAF	domain
GAF_3	PF13492.6	gi|345005567|ref|YP_004808420.1|	-	2.6e-05	24.6	0.0	5.9e-05	23.4	0.0	1.6	1	0	0	1	1	1	1	GAF	domain
PAS_3	PF08447.12	gi|345005567|ref|YP_004808420.1|	-	0.0001	22.5	0.0	0.0003	21.0	0.0	1.9	1	1	0	1	1	1	1	PAS	fold
CCB2_CCB4	PF11152.8	gi|345005567|ref|YP_004808420.1|	-	0.0014	17.9	0.0	0.0028	17.0	0.0	1.4	1	0	0	1	1	1	1	Cofactor	assembly	of	complex	C	subunit	B,	CCB2/CCB4
PAS_8	PF13188.7	gi|345005567|ref|YP_004808420.1|	-	0.0017	18.3	1.5	0.047	13.7	0.0	3.5	4	0	0	4	4	4	1	PAS	domain
PAS_9	PF13426.7	gi|345005567|ref|YP_004808420.1|	-	0.0067	16.7	0.0	0.032	14.5	0.0	2.1	2	0	0	2	2	2	1	PAS	domain
ABC_membrane	PF00664.23	gi|345005568|ref|YP_004808421.1|	-	4.2e-44	151.3	5.8	5.2e-44	150.9	5.8	1.1	1	0	0	1	1	1	1	ABC	transporter	transmembrane	region
ABC_tran	PF00005.27	gi|345005568|ref|YP_004808421.1|	-	4.6e-39	134.1	0.0	9.7e-39	133.0	0.0	1.6	1	0	0	1	1	1	1	ABC	transporter
SMC_N	PF02463.19	gi|345005568|ref|YP_004808421.1|	-	8.9e-06	25.3	0.1	0.00052	19.5	0.0	2.2	1	1	1	2	2	2	1	RecF/RecN/SMC	N	terminal	domain
DUF2107	PF09880.9	gi|345005568|ref|YP_004808421.1|	-	0.00015	21.8	0.9	0.00038	20.5	0.9	1.6	1	0	0	1	1	1	1	Predicted	membrane	protein	(DUF2107)
AAA_22	PF13401.6	gi|345005568|ref|YP_004808421.1|	-	0.00017	21.9	0.2	0.0013	19.1	0.2	2.2	1	1	0	1	1	1	1	AAA	domain
AAA_16	PF13191.6	gi|345005568|ref|YP_004808421.1|	-	0.0014	19.0	1.2	0.0042	17.5	1.0	1.9	1	1	0	1	1	1	1	AAA	ATPase	domain
RsgA_GTPase	PF03193.16	gi|345005568|ref|YP_004808421.1|	-	0.0029	17.5	0.0	0.0057	16.6	0.0	1.4	1	0	0	1	1	1	1	RsgA	GTPase
AAA_29	PF13555.6	gi|345005568|ref|YP_004808421.1|	-	0.0044	16.7	0.0	0.01	15.6	0.0	1.6	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_30	PF13604.6	gi|345005568|ref|YP_004808421.1|	-	0.0055	16.4	0.3	0.022	14.5	0.3	1.9	1	1	0	1	1	1	1	AAA	domain
Zeta_toxin	PF06414.12	gi|345005568|ref|YP_004808421.1|	-	0.012	14.9	0.0	0.028	13.7	0.0	1.6	1	0	0	1	1	1	0	Zeta	toxin
AAA_18	PF13238.6	gi|345005568|ref|YP_004808421.1|	-	0.015	15.9	0.0	0.06	13.9	0.0	2.1	1	1	0	1	1	1	0	AAA	domain
AAA	PF00004.29	gi|345005568|ref|YP_004808421.1|	-	0.015	15.7	0.1	0.17	12.3	0.1	2.4	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
ABC_ATPase	PF09818.9	gi|345005568|ref|YP_004808421.1|	-	0.02	13.7	0.3	0.17	10.6	0.0	2.0	2	0	0	2	2	2	0	Predicted	ATPase	of	the	ABC	class
DUF2794	PF10984.8	gi|345005568|ref|YP_004808421.1|	-	0.025	14.7	0.0	0.073	13.2	0.0	1.8	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2794)
AAA_33	PF13671.6	gi|345005568|ref|YP_004808421.1|	-	0.027	14.7	0.3	0.14	12.4	0.0	2.4	3	0	0	3	3	2	0	AAA	domain
AAA_21	PF13304.6	gi|345005568|ref|YP_004808421.1|	-	0.03	14.1	0.0	0.06	13.2	0.0	1.5	1	0	0	1	1	1	0	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_23	PF13476.6	gi|345005568|ref|YP_004808421.1|	-	0.044	14.3	0.0	0.082	13.4	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
AAA_5	PF07728.14	gi|345005568|ref|YP_004808421.1|	-	0.046	13.7	0.3	0.46	10.5	0.3	2.4	1	1	0	1	1	1	0	AAA	domain	(dynein-related	subfamily)
NTPase_1	PF03266.15	gi|345005568|ref|YP_004808421.1|	-	0.061	13.2	0.2	2.8	7.8	0.2	2.3	1	1	0	1	1	1	0	NTPase
MMR_HSR1	PF01926.23	gi|345005568|ref|YP_004808421.1|	-	0.061	13.4	0.0	0.24	11.5	0.0	2.0	1	0	0	1	1	1	0	50S	ribosome-binding	GTPase
ACR_tran	PF00873.19	gi|345005568|ref|YP_004808421.1|	-	0.11	10.2	0.3	0.17	9.5	0.3	1.2	1	0	0	1	1	1	0	AcrB/AcrD/AcrF	family
IstB_IS21	PF01695.17	gi|345005568|ref|YP_004808421.1|	-	0.12	12.1	0.1	4.9	6.8	0.0	2.4	2	0	0	2	2	2	0	IstB-like	ATP	binding	protein
DUF87	PF01935.17	gi|345005568|ref|YP_004808421.1|	-	0.16	12.1	0.1	0.49	10.5	0.1	1.8	1	0	0	1	1	1	0	Helicase	HerA,	central	domain
DEAD	PF00270.29	gi|345005568|ref|YP_004808421.1|	-	0.16	11.7	0.1	0.41	10.4	0.1	1.6	1	1	0	1	1	1	0	DEAD/DEAH	box	helicase
NACHT	PF05729.12	gi|345005568|ref|YP_004808421.1|	-	0.18	11.7	0.5	0.96	9.4	0.0	2.1	2	0	0	2	2	2	0	NACHT	domain
DUF445	PF04286.12	gi|345005569|ref|YP_004808422.1|	-	7.9e-06	25.9	22.3	4.5e-05	23.4	22.3	2.1	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF445)
YpjP	PF14005.6	gi|345005569|ref|YP_004808422.1|	-	6.6e-05	23.0	21.6	0.016	15.2	4.1	3.4	1	1	2	3	3	3	2	YpjP-like	protein
GerPC	PF10737.9	gi|345005569|ref|YP_004808422.1|	-	0.00029	21.0	8.9	0.0094	16.0	3.4	2.2	1	1	1	2	2	2	2	Spore	germination	protein	GerPC
EcsC	PF12787.7	gi|345005569|ref|YP_004808422.1|	-	0.00057	19.6	5.1	2.2	7.9	0.1	3.4	1	1	1	2	2	2	2	EcsC	protein	family
COMPASS-Shg1	PF05205.12	gi|345005569|ref|YP_004808422.1|	-	0.0035	18.0	17.6	7.7e+02	0.9	17.6	3.2	1	1	0	1	1	1	0	COMPASS	(Complex	proteins	associated	with	Set1p)	component	shg1
MT0933_antitox	PF14013.6	gi|345005569|ref|YP_004808422.1|	-	0.0041	17.4	22.4	67	3.9	7.4	5.8	1	1	1	2	2	2	0	MT0933-like	antitoxin	protein
DUF5314	PF17241.2	gi|345005569|ref|YP_004808422.1|	-	0.0065	16.2	11.7	7.8e+02	-0.4	11.7	3.8	1	1	0	1	1	1	0	Family	of	unknown	function	(DUF5314)
Spore_III_AB	PF09548.10	gi|345005569|ref|YP_004808422.1|	-	0.034	14.3	4.7	17	5.5	4.7	3.0	1	1	0	1	1	1	0	Stage	III	sporulation	protein	AB	(spore_III_AB)
PROCN	PF08083.11	gi|345005569|ref|YP_004808422.1|	-	0.044	12.5	2.5	0.55	8.9	0.2	2.1	1	1	1	2	2	2	0	PROCN	(NUC071)	domain
DUF3819	PF12842.7	gi|345005569|ref|YP_004808422.1|	-	0.049	13.6	17.3	1.4	8.8	4.0	3.6	1	1	2	3	3	3	0	Domain	of	unknown	function	(DUF3819)
ARGLU	PF15346.6	gi|345005569|ref|YP_004808422.1|	-	0.068	13.0	50.6	1.2	9.0	4.1	5.0	1	1	3	4	4	4	0	Arginine	and	glutamate-rich	1
SecA_SW	PF07516.13	gi|345005569|ref|YP_004808422.1|	-	0.068	13.2	18.0	3.8e+02	1.0	18.0	2.6	1	1	0	1	1	1	0	SecA	Wing	and	Scaffold	domain
PIN_8	PF18476.1	gi|345005569|ref|YP_004808422.1|	-	0.069	13.0	15.1	44	3.8	15.0	2.5	1	1	0	1	1	1	0	PIN	like	domain
Spo0A_C	PF08769.11	gi|345005569|ref|YP_004808422.1|	-	0.086	12.9	11.4	0.14	12.3	2.0	3.1	1	1	2	3	3	3	0	Sporulation	initiation	factor	Spo0A	C	terminal
PGDH_C	PF16896.5	gi|345005569|ref|YP_004808422.1|	-	0.11	12.5	30.2	2.9e+02	1.3	8.3	5.2	1	1	1	2	2	2	0	Phosphogluconate	dehydrogenase	(decarboxylating)	C-term
Ndc1_Nup	PF09531.10	gi|345005569|ref|YP_004808422.1|	-	0.21	10.2	4.7	0.63	8.7	4.7	1.7	1	1	0	1	1	1	0	Nucleoporin	protein	Ndc1-Nup
HEPN_Swt1	PF18731.1	gi|345005569|ref|YP_004808422.1|	-	0.61	10.5	10.2	3.7e+03	-1.7	10.2	4.1	1	1	0	1	1	1	0	Swt1-like	HEPN
CBFD_NFYB_HMF	PF00808.23	gi|345005569|ref|YP_004808422.1|	-	0.63	10.4	21.6	21	5.5	3.1	4.8	1	1	4	5	5	5	0	Histone-like	transcription	factor	(CBF/NF-Y)	and	archaeal	histone
Cornifin	PF02389.15	gi|345005569|ref|YP_004808422.1|	-	0.85	9.8	8.0	2	8.6	8.0	1.7	1	1	0	1	1	1	0	Cornifin	(SPRR)	family
CelTOS	PF18659.1	gi|345005569|ref|YP_004808422.1|	-	1.6	9.2	18.7	28	5.2	5.5	3.7	1	1	1	2	2	2	0	Cell-traversal	protein	for	ookinetes	and	sporozoites
Dynein_light	PF01221.18	gi|345005569|ref|YP_004808422.1|	-	2.4	8.5	11.7	4.2	7.8	1.4	3.6	1	1	1	2	2	2	0	Dynein	light	chain	type	1
CEL_III_C	PF18054.1	gi|345005569|ref|YP_004808422.1|	-	3	7.9	26.3	1.7	8.7	7.4	2.7	1	1	2	3	3	3	0	CEL-III	C-terminal
DUF4400	PF14348.6	gi|345005569|ref|YP_004808422.1|	-	5.1	6.5	14.4	9.7	5.6	3.1	2.9	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4400)
Usp	PF00582.26	gi|345005570|ref|YP_004808423.1|	-	1.1e-25	90.8	0.6	1.3e-25	90.6	0.6	1.0	1	0	0	1	1	1	1	Universal	stress	protein	family
DUF2482	PF10655.9	gi|345005570|ref|YP_004808423.1|	-	0.14	12.6	0.1	0.24	11.9	0.1	1.4	1	0	0	1	1	1	0	Hypothetical	protein	of	unknown	function	(DUF2482)
DFP	PF04127.15	gi|345005571|ref|YP_004808424.1|	-	8.9e-47	159.3	2.7	4.9e-46	156.9	0.7	2.1	2	0	0	2	2	2	1	DNA	/	pantothenate	metabolism	flavoprotein
Flavoprotein	PF02441.19	gi|345005571|ref|YP_004808424.1|	-	5.1e-37	127.1	0.7	8.1e-37	126.4	0.7	1.3	1	0	0	1	1	1	1	Flavoprotein
PhaG_MnhG_YufB	PF03334.14	gi|345005572|ref|YP_004808425.1|	-	8.3e-24	83.6	6.7	1.4e-23	82.9	6.7	1.4	1	0	0	1	1	1	1	Na+/H+	antiporter	subunit
MrpF_PhaF	PF04066.13	gi|345005573|ref|YP_004808426.1|	-	3.6e-17	62.5	13.1	3.6e-17	62.5	13.1	1.8	2	0	0	2	2	2	1	Multiple	resistance	and	pH	regulation	protein	F	(MrpF	/	PhaF)
MNHE	PF01899.16	gi|345005574|ref|YP_004808427.1|	-	1.4e-40	138.4	2.0	1.6e-40	138.3	2.0	1.0	1	0	0	1	1	1	1	Na+/H+	ion	antiporter	subunit
Proton_antipo_M	PF00361.20	gi|345005575|ref|YP_004808428.1|	-	1.6e-53	181.8	19.0	2.3e-51	174.7	19.0	2.6	1	1	0	1	1	1	1	Proton-conducting	membrane	transporter
Proton_antipo_N	PF00662.20	gi|345005575|ref|YP_004808428.1|	-	3.7e-05	23.7	0.2	0.0002	21.4	0.2	2.3	1	0	0	1	1	1	1	NADH-Ubiquinone	oxidoreductase	(complex	I),	chain	5	N-terminus
NADHdeh_related	PF10125.9	gi|345005575|ref|YP_004808428.1|	-	0.0042	16.5	6.2	0.0042	16.5	6.2	2.6	2	0	0	2	2	2	1	NADH	dehydrogenase	I,	subunit	N	related	protein
Oxidored_q2	PF00420.24	gi|345005576|ref|YP_004808429.1|	-	7.1e-28	96.3	3.6	8.8e-28	96.0	3.6	1.1	1	0	0	1	1	1	1	NADH-ubiquinone/plastoquinone	oxidoreductase	chain	4L
MnhB	PF04039.13	gi|345005577|ref|YP_004808430.1|	-	6e-36	123.5	13.8	7e-36	123.3	13.8	1.0	1	0	0	1	1	1	1	Domain	related	to	MnhB	subunit	of	Na+/H+	antiporter
E1-E2_ATPase	PF00122.20	gi|345005577|ref|YP_004808430.1|	-	0.25	10.8	3.0	6.2	6.3	3.1	2.1	1	1	1	2	2	2	0	E1-E2	ATPase
Proton_antipo_M	PF00361.20	gi|345005578|ref|YP_004808431.1|	-	1.1e-68	231.6	16.8	1.1e-68	231.6	16.8	2.6	3	0	0	3	3	3	1	Proton-conducting	membrane	transporter
DUF4040	PF13244.6	gi|345005578|ref|YP_004808431.1|	-	1.7e-15	56.9	11.2	1.7e-15	56.9	11.2	4.9	6	0	0	6	6	6	1	Domain	of	unknown	function	(DUF4040)
Proton_antipo_N	PF00662.20	gi|345005578|ref|YP_004808431.1|	-	7.5e-14	51.6	0.1	7.5e-14	51.6	0.1	3.4	3	0	0	3	3	3	1	NADH-Ubiquinone	oxidoreductase	(complex	I),	chain	5	N-terminus
Pribosyltran	PF00156.27	gi|345005579|ref|YP_004808432.1|	-	1.1e-13	51.1	1.7	1.1e-13	51.1	1.7	1.6	1	1	1	2	2	2	1	Phosphoribosyl	transferase	domain
UPRTase	PF14681.6	gi|345005579|ref|YP_004808432.1|	-	0.0012	18.3	0.1	0.0018	17.8	0.1	1.3	1	0	0	1	1	1	1	Uracil	phosphoribosyltransferase
PRTase_2	PF15609.6	gi|345005579|ref|YP_004808432.1|	-	0.037	13.5	0.2	0.051	13.1	0.2	1.2	1	0	0	1	1	1	0	Phosphoribosyl	transferase
FadR_C	PF07840.12	gi|345005579|ref|YP_004808432.1|	-	0.17	11.8	0.0	0.25	11.2	0.0	1.2	1	0	0	1	1	1	0	FadR	C-terminal	domain
DDE_3	PF13358.6	gi|345005580|ref|YP_004808433.1|	-	2.2e-26	92.4	0.0	3.8e-26	91.6	0.0	1.4	1	0	0	1	1	1	1	DDE	superfamily	endonuclease
HTH_32	PF13565.6	gi|345005580|ref|YP_004808433.1|	-	7.4e-15	55.3	1.3	3.1e-14	53.3	0.6	2.4	3	0	0	3	3	3	1	Homeodomain-like	domain
HTH_23	PF13384.6	gi|345005580|ref|YP_004808433.1|	-	2.3e-12	46.3	0.1	8.8e-11	41.3	0.0	2.8	2	1	0	2	2	2	1	Homeodomain-like	domain
HTH_29	PF13551.6	gi|345005580|ref|YP_004808433.1|	-	6e-12	45.4	0.5	1.8e-11	43.9	0.5	1.8	2	0	0	2	2	2	1	Winged	helix-turn	helix
HTH_28	PF13518.6	gi|345005580|ref|YP_004808433.1|	-	3.7e-05	23.8	0.2	0.00022	21.3	0.1	2.3	2	0	0	2	2	2	1	Helix-turn-helix	domain
Terminase_5	PF06056.12	gi|345005580|ref|YP_004808433.1|	-	0.02	14.8	0.0	0.066	13.1	0.0	1.9	1	0	0	1	1	1	0	Putative	ATPase	subunit	of	terminase	(gpP-like)
GDE_N	PF12439.8	gi|345005580|ref|YP_004808433.1|	-	0.07	12.5	0.2	0.13	11.7	0.2	1.3	1	0	0	1	1	1	0	Glycogen	debranching	enzyme	N	terminal
HTH_Tnp_Tc3_2	PF01498.18	gi|345005580|ref|YP_004808433.1|	-	0.08	13.2	0.0	0.2	11.9	0.0	1.7	1	0	0	1	1	1	0	Transposase
UPF0236	PF06782.11	gi|345005581|ref|YP_004808434.1|	-	9.7e-06	24.5	0.0	0.00026	19.8	0.0	2.1	2	0	0	2	2	2	2	Uncharacterised	protein	family	(UPF0236)
Transposase_mut	PF00872.18	gi|345005581|ref|YP_004808434.1|	-	0.00037	19.4	0.2	1	8.1	0.0	2.9	2	2	0	2	2	2	2	Transposase,	Mutator	family
EptA_B_N	PF08019.12	gi|345005582|ref|YP_004808435.1|	-	0.16	11.8	0.0	0.18	11.7	0.0	1.0	1	0	0	1	1	1	0	Phosphoethanolamine	transferase	EptA/EptB
PetG	PF02529.15	gi|345005582|ref|YP_004808435.1|	-	0.33	10.8	2.5	1.1	9.2	2.5	1.8	1	1	0	1	1	1	0	Cytochrome	B6-F	complex	subunit	5
AstE_AspA	PF04952.14	gi|345005583|ref|YP_004808436.1|	-	4.4e-61	206.5	0.0	5.5e-61	206.2	0.0	1.0	1	0	0	1	1	1	1	Succinylglutamate	desuccinylase	/	Aspartoacylase	family
Peptidase_M99	PF17033.5	gi|345005583|ref|YP_004808436.1|	-	0.0071	15.8	0.0	0.01	15.3	0.0	1.2	1	0	0	1	1	1	1	Carboxypeptidase	controlling	helical	cell	shape	catalytic
Peptidase_S9	PF00326.21	gi|345005584|ref|YP_004808437.1|	-	4.3e-47	160.3	0.6	1.5e-46	158.6	0.1	1.9	2	0	0	2	2	2	1	Prolyl	oligopeptidase	family
PD40	PF07676.12	gi|345005584|ref|YP_004808437.1|	-	4e-11	42.5	0.8	0.022	14.7	0.1	4.3	4	0	0	4	4	4	3	WD40-like	Beta	Propeller	Repeat
Peptidase_S15	PF02129.18	gi|345005584|ref|YP_004808437.1|	-	1.1e-08	35.1	0.6	4.8e-05	23.1	0.6	3.0	2	1	1	3	3	3	2	X-Pro	dipeptidyl-peptidase	(S15	family)
Hydrolase_4	PF12146.8	gi|345005584|ref|YP_004808437.1|	-	3.6e-06	26.4	0.8	0.0059	15.9	0.0	2.7	3	0	0	3	3	3	2	Serine	aminopeptidase,	S33
Esterase_phd	PF10503.9	gi|345005584|ref|YP_004808437.1|	-	3.8e-06	26.6	0.0	6.8e-06	25.7	0.0	1.4	1	0	0	1	1	1	1	Esterase	PHB	depolymerase
DLH	PF01738.18	gi|345005584|ref|YP_004808437.1|	-	2.3e-05	24.1	0.0	4.4e-05	23.1	0.0	1.4	1	0	0	1	1	1	1	Dienelactone	hydrolase	family
DPPIV_N	PF00930.21	gi|345005584|ref|YP_004808437.1|	-	0.024	13.4	0.0	2.8	6.6	0.0	2.4	2	0	0	2	2	2	0	Dipeptidyl	peptidase	IV	(DPP	IV)	N-terminal	region
Abhydrolase_1	PF00561.20	gi|345005584|ref|YP_004808437.1|	-	0.1	12.2	0.8	6.1	6.4	0.0	2.4	1	1	0	2	2	2	0	alpha/beta	hydrolase	fold
Esterase	PF00756.20	gi|345005584|ref|YP_004808437.1|	-	0.16	11.6	0.5	17	5.0	0.0	3.1	3	0	0	3	3	3	0	Putative	esterase
DUF4349	PF14257.6	gi|345005585|ref|YP_004808438.1|	-	2.9e-61	206.6	5.2	3.7e-61	206.3	5.2	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4349)
Lebercilin	PF15619.6	gi|345005585|ref|YP_004808438.1|	-	0.00065	19.4	5.5	0.0012	18.6	5.5	1.3	1	0	0	1	1	1	1	Ciliary	protein	causing	Leber	congenital	amaurosis	disease
ABC_tran_CTD	PF16326.5	gi|345005585|ref|YP_004808438.1|	-	0.00085	19.5	4.8	0.042	14.1	0.4	3.1	2	1	1	3	3	3	2	ABC	transporter	C-terminal	domain
Spc7	PF08317.11	gi|345005585|ref|YP_004808438.1|	-	0.0046	15.9	3.9	0.0075	15.2	3.9	1.2	1	0	0	1	1	1	1	Spc7	kinetochore	protein
V_ATPase_I	PF01496.19	gi|345005585|ref|YP_004808438.1|	-	0.0082	14.1	0.4	0.0096	13.9	0.4	1.1	1	0	0	1	1	1	1	V-type	ATPase	116kDa	subunit	family
DUF4988	PF16378.5	gi|345005585|ref|YP_004808438.1|	-	0.0083	15.8	0.8	0.018	14.7	0.8	1.5	1	1	0	1	1	1	1	Domain	of	unknown	function
FTA4	PF13093.6	gi|345005585|ref|YP_004808438.1|	-	0.014	15.3	2.7	0.019	14.8	2.7	1.2	1	0	0	1	1	1	0	Kinetochore	complex	Fta4	of	Sim4	subunit,	or	CENP-50
AAA_13	PF13166.6	gi|345005585|ref|YP_004808438.1|	-	0.015	14.0	1.4	0.018	13.7	1.4	1.0	1	0	0	1	1	1	0	AAA	domain
DUF1358	PF07096.11	gi|345005585|ref|YP_004808438.1|	-	0.02	14.8	0.0	0.041	13.9	0.0	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1358)
Rootletin	PF15035.6	gi|345005585|ref|YP_004808438.1|	-	0.025	14.6	2.8	0.035	14.1	2.8	1.1	1	0	0	1	1	1	0	Ciliary	rootlet	component,	centrosome	cohesion
Seryl_tRNA_N	PF02403.22	gi|345005585|ref|YP_004808438.1|	-	0.028	14.6	2.6	0.028	14.6	2.6	1.5	2	0	0	2	2	1	0	Seryl-tRNA	synthetase	N-terminal	domain
DUF1664	PF07889.12	gi|345005585|ref|YP_004808438.1|	-	0.033	14.2	1.9	0.092	12.8	1.9	1.6	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF1664)
Mt_ATP-synt_D	PF05873.12	gi|345005585|ref|YP_004808438.1|	-	0.037	13.9	0.4	0.17	11.7	0.4	1.9	1	1	0	1	1	1	0	ATP	synthase	D	chain,	mitochondrial	(ATP5H)
Med9	PF07544.13	gi|345005585|ref|YP_004808438.1|	-	0.038	14.1	3.1	1.1	9.4	0.3	2.3	2	0	0	2	2	2	0	RNA	polymerase	II	transcription	mediator	complex	subunit	9
Laminin_II	PF06009.12	gi|345005585|ref|YP_004808438.1|	-	0.04	13.9	5.5	2.6	8.1	1.1	2.2	1	1	1	2	2	2	0	Laminin	Domain	II
DUF4200	PF13863.6	gi|345005585|ref|YP_004808438.1|	-	0.047	14.1	4.1	1.6	9.1	0.1	2.3	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4200)
OEP	PF02321.18	gi|345005585|ref|YP_004808438.1|	-	0.057	13.2	7.9	0.11	12.3	7.9	1.4	1	0	0	1	1	1	0	Outer	membrane	efflux	protein
DUF16	PF01519.16	gi|345005585|ref|YP_004808438.1|	-	0.06	13.8	2.7	0.69	10.4	0.2	2.6	1	1	2	3	3	3	0	Protein	of	unknown	function	DUF16
PilJ	PF13675.6	gi|345005585|ref|YP_004808438.1|	-	0.073	13.1	2.8	0.054	13.5	1.0	1.7	2	0	0	2	2	1	0	Type	IV	pili	methyl-accepting	chemotaxis	transducer	N-term
Snapin_Pallidin	PF14712.6	gi|345005585|ref|YP_004808438.1|	-	0.09	13.2	3.0	0.18	12.2	3.0	1.4	1	0	0	1	1	1	0	Snapin/Pallidin
DUF2730	PF10805.8	gi|345005585|ref|YP_004808438.1|	-	0.097	12.8	2.0	0.41	10.8	2.0	1.9	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF2730)
Sec8_exocyst	PF04048.14	gi|345005585|ref|YP_004808438.1|	-	0.11	12.3	0.5	0.37	10.7	0.3	1.7	1	1	1	2	2	2	0	Sec8	exocyst	complex	component	specific	domain
Phage_GP20	PF06810.11	gi|345005585|ref|YP_004808438.1|	-	0.17	11.7	1.5	0.3	10.9	1.5	1.3	1	0	0	1	1	1	0	Phage	minor	structural	protein	GP20
Baculo_PEP_C	PF04513.12	gi|345005585|ref|YP_004808438.1|	-	0.17	11.9	2.7	0.31	11.1	2.7	1.4	1	0	0	1	1	1	0	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
ATG16	PF08614.11	gi|345005585|ref|YP_004808438.1|	-	0.18	12.0	11.2	0.33	11.2	10.3	1.9	1	1	1	2	2	2	0	Autophagy	protein	16	(ATG16)
PCRF	PF03462.18	gi|345005585|ref|YP_004808438.1|	-	0.24	11.3	3.4	0.39	10.6	3.4	1.3	1	0	0	1	1	1	0	PCRF	domain
BLOC1_2	PF10046.9	gi|345005585|ref|YP_004808438.1|	-	0.25	11.7	2.9	1e+02	3.3	1.0	2.6	2	1	0	2	2	2	0	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
Prefoldin	PF02996.17	gi|345005585|ref|YP_004808438.1|	-	0.29	11.1	5.2	1.3	9.0	0.4	2.6	2	1	1	3	3	2	0	Prefoldin	subunit
DivIC	PF04977.15	gi|345005585|ref|YP_004808438.1|	-	0.32	10.8	8.5	1	9.2	1.4	2.5	1	1	1	2	2	2	0	Septum	formation	initiator
T3SSipB	PF16535.5	gi|345005585|ref|YP_004808438.1|	-	0.35	11.3	2.7	0.22	12.0	0.9	1.5	2	0	0	2	2	1	0	Type	III	cell	invasion	protein	SipB
PRKG1_interact	PF15898.5	gi|345005585|ref|YP_004808438.1|	-	0.38	11.7	6.1	0.55	11.2	1.3	2.5	1	1	1	2	2	2	0	cGMP-dependent	protein	kinase	interacting	domain
APG6_N	PF17675.1	gi|345005585|ref|YP_004808438.1|	-	0.4	11.2	10.6	0.6	10.6	8.4	2.2	2	1	0	2	2	1	0	Apg6	coiled-coil	region
SlyX	PF04102.12	gi|345005585|ref|YP_004808438.1|	-	0.52	11.0	6.6	3.9	8.2	4.0	2.5	1	1	1	2	2	2	0	SlyX
ADIP	PF11559.8	gi|345005585|ref|YP_004808438.1|	-	0.63	10.1	6.6	2.3	8.3	6.5	1.8	1	1	0	1	1	1	0	Afadin-	and	alpha	-actinin-Binding
FliJ	PF02050.16	gi|345005585|ref|YP_004808438.1|	-	0.68	10.2	6.5	0.81	9.9	4.9	1.9	2	1	1	3	3	2	0	Flagellar	FliJ	protein
NPV_P10	PF05531.12	gi|345005585|ref|YP_004808438.1|	-	0.8	10.2	4.3	4.7	7.8	0.6	2.3	1	1	1	2	2	2	0	Nucleopolyhedrovirus	P10	protein
Cep57_CLD_2	PF14197.6	gi|345005585|ref|YP_004808438.1|	-	0.83	9.8	7.3	4	7.6	7.2	2.0	1	1	0	1	1	1	0	Centrosome	localisation	domain	of	PPC89
Uds1	PF15456.6	gi|345005585|ref|YP_004808438.1|	-	1	9.5	5.8	4	7.6	0.4	2.2	1	1	1	2	2	2	0	Up-regulated	During	Septation
Matrilin_ccoil	PF10393.9	gi|345005585|ref|YP_004808438.1|	-	1.1	9.1	3.3	6.1	6.8	0.0	2.5	2	0	0	2	2	2	0	Trimeric	coiled-coil	oligomerisation	domain	of	matrilin
Cnn_1N	PF07989.11	gi|345005585|ref|YP_004808438.1|	-	4	7.7	6.6	8	6.7	0.9	2.2	1	1	1	2	2	2	0	Centrosomin	N-terminal	motif	1
DUF4407	PF14362.6	gi|345005585|ref|YP_004808438.1|	-	4.5	6.5	7.6	13	5.0	7.6	1.9	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4407)
EMP24_GP25L	PF01105.24	gi|345005585|ref|YP_004808438.1|	-	4.7	7.1	5.7	3	7.7	1.2	2.1	1	1	1	2	2	2	0	emp24/gp25L/p24	family/GOLD
DUF2071	PF09844.9	gi|345005586|ref|YP_004808439.1|	-	2e-63	213.8	0.0	9.2e-63	211.7	0.0	1.8	1	1	0	1	1	1	1	Uncharacterized	conserved	protein	(COG2071)
ADC	PF06314.11	gi|345005586|ref|YP_004808439.1|	-	0.015	14.9	0.0	0.018	14.6	0.0	1.2	1	0	0	1	1	1	0	Acetoacetate	decarboxylase	(ADC)
Aminotran_5	PF00266.19	gi|345005587|ref|YP_004808440.1|	-	3.9e-52	177.5	0.0	1.1e-51	176.0	0.0	1.6	1	1	0	1	1	1	1	Aminotransferase	class-V
Aminotran_1_2	PF00155.21	gi|345005587|ref|YP_004808440.1|	-	3.7e-07	29.7	0.0	0.0012	18.1	0.0	2.1	2	0	0	2	2	2	2	Aminotransferase	class	I	and	II
DegT_DnrJ_EryC1	PF01041.17	gi|345005587|ref|YP_004808440.1|	-	4.1e-05	23.0	0.2	6.3e-05	22.5	0.2	1.2	1	0	0	1	1	1	1	DegT/DnrJ/EryC1/StrS	aminotransferase	family
Cys_Met_Meta_PP	PF01053.20	gi|345005587|ref|YP_004808440.1|	-	0.04	12.5	0.0	0.052	12.1	0.0	1.2	1	0	0	1	1	1	0	Cys/Met	metabolism	PLP-dependent	enzyme
DDE_Tnp_IS66	PF03050.14	gi|345005590|ref|YP_004808443.1|	-	1.2e-48	166.0	0.2	1.2e-48	166.0	0.2	2.0	2	1	0	2	2	2	1	Transposase	IS66	family
ZapB	PF06005.12	gi|345005590|ref|YP_004808443.1|	-	3e-09	37.2	6.3	9.7e-09	35.6	6.3	1.9	1	0	0	1	1	1	1	Cell	division	protein	ZapB
zf-IS66	PF13005.7	gi|345005590|ref|YP_004808443.1|	-	1.8e-05	25.0	4.3	4.5e-05	23.8	4.3	1.7	1	0	0	1	1	1	1	zinc-finger	binding	domain	of	transposase	IS66
YabA	PF06156.13	gi|345005590|ref|YP_004808443.1|	-	4.3e-05	24.1	4.2	0.00014	22.4	4.2	1.8	1	0	0	1	1	1	1	Initiation	control	protein	YabA
CASP_C	PF08172.12	gi|345005590|ref|YP_004808443.1|	-	0.00023	20.6	1.9	0.00039	19.9	1.9	1.2	1	0	0	1	1	1	1	CASP	C	terminal
JIP_LZII	PF16471.5	gi|345005590|ref|YP_004808443.1|	-	0.00056	20.0	3.4	0.0012	19.0	3.4	1.6	1	0	0	1	1	1	1	JNK-interacting	protein	leucine	zipper	II
bZIP_1	PF00170.21	gi|345005590|ref|YP_004808443.1|	-	0.0018	18.3	7.8	0.004	17.2	7.8	1.6	1	0	0	1	1	1	1	bZIP	transcription	factor
SlyX	PF04102.12	gi|345005590|ref|YP_004808443.1|	-	0.0055	17.3	5.4	0.014	16.0	5.4	1.7	1	0	0	1	1	1	1	SlyX
DDE_Tnp_IS240	PF13610.6	gi|345005590|ref|YP_004808443.1|	-	0.012	15.8	1.4	0.044	14.0	0.0	2.4	2	1	0	2	2	2	0	DDE	domain
NUDE_C	PF04880.13	gi|345005590|ref|YP_004808443.1|	-	0.013	16.0	4.4	0.034	14.6	4.4	1.6	1	0	0	1	1	1	0	NUDE	protein,	C-terminal	conserved	region
CCDC106	PF15794.5	gi|345005590|ref|YP_004808443.1|	-	0.02	14.6	3.6	0.042	13.6	3.6	1.4	1	0	0	1	1	1	0	Coiled-coil	domain-containing	protein	106
Cnn_1N	PF07989.11	gi|345005590|ref|YP_004808443.1|	-	0.026	14.7	6.4	0.056	13.6	6.4	1.5	1	0	0	1	1	1	0	Centrosomin	N-terminal	motif	1
TSC22	PF01166.18	gi|345005590|ref|YP_004808443.1|	-	0.027	14.8	13.6	0.11	12.8	7.5	3.4	2	1	1	3	3	3	0	TSC-22/dip/bun	family
SKA1	PF07160.12	gi|345005590|ref|YP_004808443.1|	-	0.03	14.2	0.9	0.057	13.3	0.9	1.3	1	0	0	1	1	1	0	Spindle	and	kinetochore-associated	protein	1
CENP-H	PF05837.12	gi|345005590|ref|YP_004808443.1|	-	0.03	14.7	3.3	0.072	13.5	3.3	1.6	1	0	0	1	1	1	0	Centromere	protein	H	(CENP-H)
DUF4201	PF13870.6	gi|345005590|ref|YP_004808443.1|	-	0.039	13.7	3.6	0.078	12.7	3.6	1.5	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4201)
RP-C_C	PF11800.8	gi|345005590|ref|YP_004808443.1|	-	0.04	14.0	1.2	0.082	13.0	1.2	1.5	1	0	0	1	1	1	0	Replication	protein	C	C-terminal	region
V_ATPase_I	PF01496.19	gi|345005590|ref|YP_004808443.1|	-	0.049	11.6	2.1	0.07	11.1	2.1	1.1	1	0	0	1	1	1	0	V-type	ATPase	116kDa	subunit	family
HSBP1	PF06825.12	gi|345005590|ref|YP_004808443.1|	-	0.06	13.2	0.3	0.11	12.3	0.3	1.4	1	0	0	1	1	1	0	Heat	shock	factor	binding	protein	1
FlaC_arch	PF05377.11	gi|345005590|ref|YP_004808443.1|	-	0.072	13.5	3.1	0.17	12.3	3.1	1.6	1	0	0	1	1	1	0	Flagella	accessory	protein	C	(FlaC)
XhlA	PF10779.9	gi|345005590|ref|YP_004808443.1|	-	0.078	13.2	5.8	0.18	12.0	5.8	1.6	1	0	0	1	1	1	0	Haemolysin	XhlA
HOOK	PF05622.12	gi|345005590|ref|YP_004808443.1|	-	0.093	10.9	3.9	0.13	10.3	3.9	1.1	1	0	0	1	1	1	0	HOOK	protein
GAS	PF13851.6	gi|345005590|ref|YP_004808443.1|	-	0.12	11.8	6.2	0.21	10.9	6.2	1.3	1	0	0	1	1	1	0	Growth-arrest	specific	micro-tubule	binding
HALZ	PF02183.18	gi|345005590|ref|YP_004808443.1|	-	0.2	11.9	7.1	0.26	11.6	6.1	1.8	2	0	0	2	2	1	0	Homeobox	associated	leucine	zipper
EMP24_GP25L	PF01105.24	gi|345005590|ref|YP_004808443.1|	-	0.25	11.3	5.2	4.1	7.3	4.2	2.1	2	0	0	2	2	2	0	emp24/gp25L/p24	family/GOLD
Synaptobrevin	PF00957.21	gi|345005590|ref|YP_004808443.1|	-	0.25	11.1	1.7	0.43	10.4	1.7	1.3	1	0	0	1	1	1	0	Synaptobrevin
Spc24	PF08286.11	gi|345005590|ref|YP_004808443.1|	-	0.26	11.5	3.5	0.57	10.5	3.5	1.5	1	0	0	1	1	1	0	Spc24	subunit	of	Ndc80
DivIC	PF04977.15	gi|345005590|ref|YP_004808443.1|	-	0.31	10.8	8.4	0.77	9.6	8.0	1.9	1	1	0	1	1	1	0	Septum	formation	initiator
DUF4988	PF16378.5	gi|345005590|ref|YP_004808443.1|	-	0.33	10.6	3.3	0.89	9.2	1.5	2.1	2	0	0	2	2	2	0	Domain	of	unknown	function
SpoVR	PF04293.13	gi|345005590|ref|YP_004808443.1|	-	0.35	9.5	4.7	0.55	8.9	4.7	1.2	1	0	0	1	1	1	0	SpoVR	like	protein
Shugoshin_N	PF07558.11	gi|345005590|ref|YP_004808443.1|	-	0.62	10.0	6.8	0.15	11.9	2.5	2.0	1	1	1	2	2	2	0	Shugoshin	N-terminal	coiled-coil	region
Jnk-SapK_ap_N	PF09744.9	gi|345005590|ref|YP_004808443.1|	-	0.68	10.1	7.3	1.9	8.7	7.3	1.7	1	0	0	1	1	1	0	JNK_SAPK-associated	protein-1
Chibby	PF14645.6	gi|345005590|ref|YP_004808443.1|	-	0.69	10.3	4.1	1.7	9.1	4.1	1.6	1	0	0	1	1	1	0	Chibby	family
APG6_N	PF17675.1	gi|345005590|ref|YP_004808443.1|	-	0.77	10.3	9.2	1.5	9.3	9.2	1.5	1	0	0	1	1	1	0	Apg6	coiled-coil	region
ADIP	PF11559.8	gi|345005590|ref|YP_004808443.1|	-	0.78	9.8	7.1	1.7	8.7	7.1	1.5	1	0	0	1	1	1	0	Afadin-	and	alpha	-actinin-Binding
Prefoldin_2	PF01920.20	gi|345005590|ref|YP_004808443.1|	-	0.92	9.5	8.3	1.8	8.6	8.3	1.4	1	0	0	1	1	1	0	Prefoldin	subunit
GIT_CC	PF16559.5	gi|345005590|ref|YP_004808443.1|	-	1.2	9.1	5.9	2.4	8.1	5.9	1.5	1	0	0	1	1	1	0	GIT	coiled-coil	Rho	guanine	nucleotide	exchange	factor
bZIP_2	PF07716.15	gi|345005590|ref|YP_004808443.1|	-	1.2	9.3	14.7	8.7	6.5	6.5	2.6	1	1	1	2	2	2	0	Basic	region	leucine	zipper
GrpE	PF01025.19	gi|345005590|ref|YP_004808443.1|	-	1.2	8.8	5.5	2.3	7.9	5.5	1.4	1	0	0	1	1	1	0	GrpE
DUF2205	PF10224.9	gi|345005590|ref|YP_004808443.1|	-	1.5	8.9	5.6	3.6	7.7	5.6	1.6	1	0	0	1	1	1	0	Short	coiled-coil	protein
Astro_capsid_p	PF12226.8	gi|345005590|ref|YP_004808443.1|	-	1.5	7.9	4.8	2.3	7.3	4.8	1.2	1	0	0	1	1	1	0	Turkey	astrovirus	capsid	protein
DUF3552	PF12072.8	gi|345005590|ref|YP_004808443.1|	-	2.1	7.7	7.5	3.7	6.9	7.5	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3552)
DUF3450	PF11932.8	gi|345005590|ref|YP_004808443.1|	-	2.1	7.6	8.2	0.46	9.8	3.0	2.3	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF3450)
NRBF2	PF08961.10	gi|345005590|ref|YP_004808443.1|	-	2.4	7.7	14.9	0.031	13.9	7.5	1.6	2	0	0	2	2	1	0	Nuclear	receptor-binding	factor	2,	autophagy	regulator
UPF0242	PF06785.11	gi|345005590|ref|YP_004808443.1|	-	7.3	6.6	7.8	2.4	8.2	5.0	1.6	2	0	0	2	2	1	0	Uncharacterised	protein	family	(UPF0242)	N-terminus
DUF433	PF04255.14	gi|345005591|ref|YP_004808444.1|	-	6.2e-09	35.6	0.4	1e-08	34.9	0.4	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF433)
UPF0240	PF06784.11	gi|345005591|ref|YP_004808444.1|	-	0.2	11.7	0.0	0.23	11.5	0.0	1.2	1	0	0	1	1	1	0	Uncharacterised	protein	family	(UPF0240)
Lactamase_B_2	PF12706.7	gi|345005593|ref|YP_004808446.1|	-	1.8e-07	30.9	0.5	5.9e-07	29.2	0.1	2.0	2	0	0	2	2	2	1	Beta-lactamase	superfamily	domain
Lactamase_B	PF00753.27	gi|345005593|ref|YP_004808446.1|	-	1.2e-06	28.7	1.0	3.9e-06	27.0	1.0	1.9	1	0	0	1	1	1	1	Metallo-beta-lactamase	superfamily
ABC2_membrane	PF01061.24	gi|345005596|ref|YP_004808449.1|	-	1.4e-24	86.7	9.7	1.4e-24	86.7	9.7	1.3	2	0	0	2	2	2	1	ABC-2	type	transporter
ABC2_membrane_3	PF12698.7	gi|345005596|ref|YP_004808449.1|	-	6e-15	55.2	8.8	2.2e-14	53.4	2.1	2.0	2	0	0	2	2	2	2	ABC-2	family	transporter	protein
ABC2_membrane_2	PF12679.7	gi|345005596|ref|YP_004808449.1|	-	1.5e-06	27.7	6.7	1.5e-06	27.7	6.7	1.7	2	0	0	2	2	2	1	ABC-2	family	transporter	protein
12TM_1	PF09847.9	gi|345005596|ref|YP_004808449.1|	-	0.0026	16.9	0.1	0.0036	16.5	0.1	1.2	1	0	0	1	1	1	1	Membrane	protein	of	12	TMs
CcmF_C	PF16327.5	gi|345005596|ref|YP_004808449.1|	-	0.021	14.1	0.7	0.042	13.1	0.3	1.7	1	1	0	1	1	1	0	Cytochrome	c-type	biogenesis	protein	CcmF	C-terminal
ABC_tran	PF00005.27	gi|345005597|ref|YP_004808450.1|	-	4.6e-26	92.0	0.0	8.3e-26	91.1	0.0	1.4	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|345005597|ref|YP_004808450.1|	-	7.9e-15	55.4	0.0	1.3e-08	35.0	0.0	2.1	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
DUF4162	PF13732.6	gi|345005597|ref|YP_004808450.1|	-	0.00016	22.4	0.0	0.00041	21.0	0.0	1.8	2	0	0	2	2	1	1	Domain	of	unknown	function	(DUF4162)
AAA_30	PF13604.6	gi|345005597|ref|YP_004808450.1|	-	0.00019	21.2	0.6	0.0011	18.7	0.1	2.1	1	1	1	2	2	2	1	AAA	domain
AAA_23	PF13476.6	gi|345005597|ref|YP_004808450.1|	-	0.00039	21.0	0.2	0.0006	20.4	0.2	1.2	1	0	0	1	1	1	1	AAA	domain
AAA_24	PF13479.6	gi|345005597|ref|YP_004808450.1|	-	0.0016	18.2	0.0	0.071	12.8	0.0	2.2	2	0	0	2	2	2	1	AAA	domain
AAA_16	PF13191.6	gi|345005597|ref|YP_004808450.1|	-	0.0045	17.4	0.1	0.01	16.2	0.1	1.6	1	1	1	2	2	2	1	AAA	ATPase	domain
Lum_binding	PF00677.17	gi|345005597|ref|YP_004808450.1|	-	0.0048	16.8	0.1	0.013	15.5	0.1	1.7	1	0	0	1	1	1	1	Lumazine	binding	domain
AAA_15	PF13175.6	gi|345005597|ref|YP_004808450.1|	-	0.024	14.4	0.0	3.5	7.2	0.1	2.1	2	0	0	2	2	2	0	AAA	ATPase	domain
AAA_29	PF13555.6	gi|345005597|ref|YP_004808450.1|	-	0.025	14.3	0.2	0.05	13.4	0.2	1.4	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
AAA_22	PF13401.6	gi|345005597|ref|YP_004808450.1|	-	0.045	14.0	0.0	0.11	12.8	0.0	1.8	1	1	0	1	1	1	0	AAA	domain
AAA	PF00004.29	gi|345005597|ref|YP_004808450.1|	-	0.064	13.7	0.0	0.51	10.8	0.0	2.3	2	1	0	2	2	2	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
TsaE	PF02367.17	gi|345005597|ref|YP_004808450.1|	-	0.1	12.6	0.1	0.2	11.7	0.1	1.4	1	0	0	1	1	1	0	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
AAA_33	PF13671.6	gi|345005597|ref|YP_004808450.1|	-	0.11	12.6	0.0	0.36	11.0	0.0	1.9	2	0	0	2	2	2	0	AAA	domain
RsgA_GTPase	PF03193.16	gi|345005597|ref|YP_004808450.1|	-	0.14	12.0	0.1	0.32	10.9	0.1	1.5	2	0	0	2	2	2	0	RsgA	GTPase
cobW	PF02492.19	gi|345005597|ref|YP_004808450.1|	-	0.16	11.6	0.1	0.41	10.2	0.2	1.6	2	0	0	2	2	2	0	CobW/HypB/UreG,	nucleotide-binding	domain
IstB_IS21	PF01695.17	gi|345005597|ref|YP_004808450.1|	-	0.17	11.6	0.1	12	5.6	0.1	2.2	2	0	0	2	2	2	0	IstB-like	ATP	binding	protein
Zip	PF02535.22	gi|345005598|ref|YP_004808451.1|	-	0.057	12.6	16.1	0.018	14.3	4.5	2.3	1	1	1	2	2	2	0	ZIP	Zinc	transporter
DUF4637	PF15470.6	gi|345005599|ref|YP_004808452.1|	-	0.0012	18.7	3.2	0.0014	18.4	3.2	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4637)
CDC45	PF02724.14	gi|345005599|ref|YP_004808452.1|	-	0.003	15.9	0.3	0.003	15.9	0.3	1.0	1	0	0	1	1	1	1	CDC45-like	protein
CSG2	PF16965.5	gi|345005599|ref|YP_004808452.1|	-	0.018	14.0	0.2	0.022	13.7	0.2	1.1	1	0	0	1	1	1	0	Ceramide	synthase	regulator
DUF5305	PF17231.2	gi|345005599|ref|YP_004808452.1|	-	0.028	13.8	0.4	0.045	13.1	0.4	1.5	1	1	0	1	1	1	0	Family	of	unknown	function	(DUF5305)
CD20	PF04103.15	gi|345005599|ref|YP_004808452.1|	-	0.045	13.8	0.2	0.26	11.3	0.0	2.1	2	1	0	2	2	2	0	CD20-like	family
DUF4366	PF14283.6	gi|345005599|ref|YP_004808452.1|	-	0.077	13.0	1.8	0.063	13.3	0.5	1.5	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4366)
UCR_TM	PF02921.14	gi|345005599|ref|YP_004808452.1|	-	0.38	11.2	1.4	1.5	9.4	0.5	2.4	2	1	0	2	2	2	0	Ubiquinol	cytochrome	reductase	transmembrane	region
Nop14	PF04147.12	gi|345005599|ref|YP_004808452.1|	-	1.6	6.9	7.6	1.7	6.7	7.6	1.0	1	0	0	1	1	1	0	Nop14-like	family
PGF-CTERM	PF18204.1	gi|345005600|ref|YP_004808453.1|	-	1.9e-08	34.0	2.7	1.9e-08	34.0	2.7	2.5	2	0	0	2	2	2	1	PGF-CTERM	motif
Hydrolase_4	PF12146.8	gi|345005601|ref|YP_004808454.1|	-	1.3e-12	47.5	0.0	9.9e-10	38.1	0.0	2.0	2	0	0	2	2	2	2	Serine	aminopeptidase,	S33
Abhydrolase_6	PF12697.7	gi|345005601|ref|YP_004808454.1|	-	6.3e-09	36.8	14.6	8.2e-09	36.4	14.6	1.1	1	0	0	1	1	1	1	Alpha/beta	hydrolase	family
DLH	PF01738.18	gi|345005601|ref|YP_004808454.1|	-	6.6e-09	35.6	0.0	0.00016	21.3	0.0	3.0	2	1	0	2	2	2	2	Dienelactone	hydrolase	family
Abhydrolase_1	PF00561.20	gi|345005601|ref|YP_004808454.1|	-	9.3e-09	35.3	0.0	6.8e-08	32.5	0.0	1.9	1	1	0	1	1	1	1	alpha/beta	hydrolase	fold
Peptidase_S15	PF02129.18	gi|345005601|ref|YP_004808454.1|	-	1.5e-07	31.3	0.0	3.2e-06	26.9	0.0	2.0	2	0	0	2	2	2	1	X-Pro	dipeptidyl-peptidase	(S15	family)
AXE1	PF05448.12	gi|345005601|ref|YP_004808454.1|	-	0.00011	21.1	0.1	0.043	12.5	0.2	3.0	2	1	1	3	3	3	1	Acetyl	xylan	esterase	(AXE1)
Peptidase_S9	PF00326.21	gi|345005601|ref|YP_004808454.1|	-	0.00032	20.2	0.0	0.011	15.2	0.0	2.1	2	0	0	2	2	2	1	Prolyl	oligopeptidase	family
FSH1	PF03959.13	gi|345005601|ref|YP_004808454.1|	-	0.0022	17.7	0.0	0.0045	16.7	0.0	1.4	2	0	0	2	2	2	1	Serine	hydrolase	(FSH1)
BAAT_C	PF08840.11	gi|345005601|ref|YP_004808454.1|	-	0.074	13.0	0.0	7.3	6.4	0.0	2.1	2	0	0	2	2	2	0	BAAT	/	Acyl-CoA	thioester	hydrolase	C	terminal
PHF12_MRG_bd	PF16737.5	gi|345005602|ref|YP_004808455.1|	-	0.12	12.2	0.1	0.19	11.5	0.1	1.3	1	0	0	1	1	1	0	PHD	finger	protein	12	MRG	binding	domain
HTH_20	PF12840.7	gi|345005603|ref|YP_004808456.1|	-	2.3e-07	30.7	0.0	5.1e-07	29.6	0.0	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain
DZR	PF12773.7	gi|345005603|ref|YP_004808456.1|	-	0.015	15.3	4.0	0.7	10.0	0.2	2.4	2	0	0	2	2	2	0	Double	zinc	ribbon
AA_permease_2	PF13520.6	gi|345005604|ref|YP_004808457.1|	-	1.3e-49	169.2	43.8	1.7e-49	168.9	43.8	1.1	1	0	0	1	1	1	1	Amino	acid	permease
AA_permease	PF00324.21	gi|345005604|ref|YP_004808457.1|	-	3.8e-37	128.0	43.9	5.6e-37	127.4	43.9	1.2	1	0	0	1	1	1	1	Amino	acid	permease
Usp	PF00582.26	gi|345005604|ref|YP_004808457.1|	-	1.8e-21	77.2	8.2	9.2e-12	45.7	0.2	3.3	2	1	0	2	2	2	2	Universal	stress	protein	family
Usp	PF00582.26	gi|345005605|ref|YP_004808458.1|	-	0.00039	21.0	0.9	0.001	19.6	0.9	1.7	1	1	0	1	1	1	1	Universal	stress	protein	family
UPF0058	PF01893.16	gi|345005607|ref|YP_004808460.1|	-	2.5e-16	59.7	0.0	2.8e-16	59.6	0.0	1.0	1	0	0	1	1	1	1	Uncharacterised	protein	family	UPF0058
Imm2	PF14426.6	gi|345005607|ref|YP_004808460.1|	-	0.12	12.4	0.1	0.29	11.2	0.0	1.6	2	0	0	2	2	2	0	Immunity	protein	Imm2
UvrD-helicase	PF00580.21	gi|345005608|ref|YP_004808461.1|	-	8.2e-48	163.5	0.2	7.8e-47	160.3	0.2	2.2	1	1	0	1	1	1	1	UvrD/REP	helicase	N-terminal	domain
UvrD_C	PF13361.6	gi|345005608|ref|YP_004808461.1|	-	6.2e-31	108.0	0.0	4.8e-18	65.7	0.0	2.2	2	0	0	2	2	2	2	UvrD-like	helicase	C-terminal	domain
AAA_19	PF13245.6	gi|345005608|ref|YP_004808461.1|	-	4.2e-24	85.6	0.0	4.9e-23	82.1	0.0	2.5	1	1	0	1	1	1	1	AAA	domain
PDDEXK_1	PF12705.7	gi|345005608|ref|YP_004808461.1|	-	4.2e-09	36.7	0.5	3.1e-08	33.9	0.1	2.5	2	1	0	2	2	2	1	PD-(D/E)XK	nuclease	superfamily
UvrD_C_2	PF13538.6	gi|345005608|ref|YP_004808461.1|	-	8.2e-09	35.2	0.1	0.00034	20.4	0.0	2.7	2	0	0	2	2	2	2	UvrD-like	helicase	C-terminal	domain
AAA_30	PF13604.6	gi|345005608|ref|YP_004808461.1|	-	2.5e-06	27.3	0.0	2.8e-05	23.9	0.0	2.2	2	0	0	2	2	2	1	AAA	domain
AAA_11	PF13086.6	gi|345005608|ref|YP_004808461.1|	-	0.0031	17.4	0.1	0.92	9.2	0.0	2.2	2	0	0	2	2	2	2	AAA	domain
Viral_helicase1	PF01443.18	gi|345005608|ref|YP_004808461.1|	-	0.0045	16.8	0.3	20	4.8	0.1	3.6	3	0	0	3	3	3	0	Viral	(Superfamily	1)	RNA	helicase
AAA_12	PF13087.6	gi|345005608|ref|YP_004808461.1|	-	0.0078	15.9	0.0	0.064	12.9	0.0	2.2	2	0	0	2	2	2	1	AAA	domain
PhoH	PF02562.16	gi|345005608|ref|YP_004808461.1|	-	0.024	14.1	0.1	1.4	8.3	0.0	2.3	2	0	0	2	2	2	0	PhoH-like	protein
DUF2800	PF10926.8	gi|345005608|ref|YP_004808461.1|	-	0.13	11.5	0.0	1.3	8.2	0.0	2.1	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF2800)
Sigma70_r4	PF04545.16	gi|345005608|ref|YP_004808461.1|	-	0.2	11.2	0.6	10	5.7	0.1	3.2	3	0	0	3	3	3	0	Sigma-70,	region	4
PDDEXK_1	PF12705.7	gi|345005609|ref|YP_004808462.1|	-	2.3e-11	44.1	0.0	5.6e-11	42.8	0.0	1.7	1	0	0	1	1	1	1	PD-(D/E)XK	nuclease	superfamily
AsnC_trans_reg	PF01037.21	gi|345005609|ref|YP_004808462.1|	-	0.57	10.2	2.8	4.7	7.2	0.1	3.6	4	0	0	4	4	4	0	Lrp/AsnC	ligand	binding	domain
Hydrolase	PF00702.26	gi|345005610|ref|YP_004808463.1|	-	1.1e-28	101.0	1.0	1.5e-28	100.6	1.0	1.2	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Hydrolase_3	PF08282.12	gi|345005610|ref|YP_004808463.1|	-	1.2e-07	31.7	0.4	0.00041	20.2	0.2	2.2	1	1	1	2	2	2	2	haloacid	dehalogenase-like	hydrolase
HAD	PF12710.7	gi|345005610|ref|YP_004808463.1|	-	1.4e-05	25.6	0.1	4e-05	24.1	0.1	1.7	1	1	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
HAD_2	PF13419.6	gi|345005610|ref|YP_004808463.1|	-	0.00036	20.7	0.1	0.0022	18.1	0.1	2.0	1	1	0	1	1	1	1	Haloacid	dehalogenase-like	hydrolase
Sigma70_r1_1	PF03979.14	gi|345005610|ref|YP_004808463.1|	-	0.032	14.3	0.3	0.07	13.2	0.3	1.5	1	0	0	1	1	1	0	Sigma-70	factor,	region	1.1
HalOD1	PF18545.1	gi|345005612|ref|YP_004808465.1|	-	1.9e-23	82.5	2.0	2.6e-23	82.1	2.0	1.1	1	0	0	1	1	1	1	Halobacterial	output	domain	1
HTH_10	PF04967.12	gi|345005613|ref|YP_004808466.1|	-	1.4e-17	63.2	0.1	2.4e-17	62.4	0.1	1.4	1	0	0	1	1	1	1	HTH	DNA	binding	domain
BAT	PF15915.5	gi|345005613|ref|YP_004808466.1|	-	1.5e-10	41.2	0.3	2.3e-10	40.6	0.3	1.2	1	0	0	1	1	1	1	GAF	and	HTH_10	associated	domain
Sigma70_r4	PF04545.16	gi|345005613|ref|YP_004808466.1|	-	7.2e-06	25.4	2.0	2.6e-05	23.7	0.9	2.3	2	0	0	2	2	2	1	Sigma-70,	region	4
Sigma70_r4_2	PF08281.12	gi|345005613|ref|YP_004808466.1|	-	0.0022	17.6	0.5	0.35	10.6	0.2	2.5	2	0	0	2	2	2	1	Sigma-70,	region	4
HTH_1	PF00126.27	gi|345005613|ref|YP_004808466.1|	-	0.0059	16.5	0.1	0.014	15.4	0.1	1.6	1	0	0	1	1	1	1	Bacterial	regulatory	helix-turn-helix	protein,	lysR	family
HTH_28	PF13518.6	gi|345005613|ref|YP_004808466.1|	-	0.039	14.1	0.0	0.095	12.8	0.0	1.6	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_20	PF12840.7	gi|345005613|ref|YP_004808466.1|	-	0.11	12.6	0.2	0.26	11.4	0.0	1.8	2	0	0	2	2	2	0	Helix-turn-helix	domain
HTH_3	PF01381.22	gi|345005613|ref|YP_004808466.1|	-	0.13	12.3	0.3	0.43	10.7	0.2	2.0	1	1	1	2	2	2	0	Helix-turn-helix
HTH_AraC	PF00165.23	gi|345005613|ref|YP_004808466.1|	-	0.15	12.2	0.1	1.1	9.4	0.0	2.2	2	0	0	2	2	2	0	Bacterial	regulatory	helix-turn-helix	proteins,	AraC	family
HTH_10	PF04967.12	gi|345005614|ref|YP_004808467.1|	-	1.1e-16	60.3	0.0	2e-16	59.5	0.0	1.4	1	0	0	1	1	1	1	HTH	DNA	binding	domain
BAT	PF15915.5	gi|345005614|ref|YP_004808467.1|	-	1.1e-11	44.8	0.1	1.6e-11	44.3	0.1	1.2	1	0	0	1	1	1	1	GAF	and	HTH_10	associated	domain
HTH_24	PF13412.6	gi|345005614|ref|YP_004808467.1|	-	0.00011	21.7	0.0	0.00026	20.5	0.0	1.6	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
MarR_2	PF12802.7	gi|345005614|ref|YP_004808467.1|	-	0.00042	20.1	0.0	0.00091	19.1	0.0	1.5	1	0	0	1	1	1	1	MarR	family
Sigma70_r4_2	PF08281.12	gi|345005614|ref|YP_004808467.1|	-	0.00081	19.0	0.3	0.0023	17.6	0.1	1.8	2	0	0	2	2	2	1	Sigma-70,	region	4
HTH_AsnC-type	PF13404.6	gi|345005614|ref|YP_004808467.1|	-	0.0024	17.7	0.2	0.0051	16.6	0.2	1.5	1	0	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
Sigma70_r4	PF04545.16	gi|345005614|ref|YP_004808467.1|	-	0.0074	15.8	0.0	0.015	14.8	0.0	1.5	1	0	0	1	1	1	1	Sigma-70,	region	4
HTH_50	PF18024.1	gi|345005614|ref|YP_004808467.1|	-	0.2	11.3	0.1	0.66	9.6	0.0	1.8	2	0	0	2	2	2	0	Helix-turn-helix	domain
OrfB_IS605	PF01385.19	gi|345005617|ref|YP_004808470.1|	-	1.7e-28	99.2	0.0	6.8e-28	97.3	0.0	2.0	2	0	0	2	2	2	1	Probable	transposase
OrfB_Zn_ribbon	PF07282.11	gi|345005617|ref|YP_004808470.1|	-	2.5e-19	68.9	1.0	5.1e-19	68.0	1.0	1.6	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
C1_2	PF03107.16	gi|345005617|ref|YP_004808470.1|	-	0.00042	20.6	0.8	0.0013	19.0	0.8	1.8	1	0	0	1	1	1	1	C1	domain
A2L_zn_ribbon	PF08792.10	gi|345005617|ref|YP_004808470.1|	-	0.16	11.7	2.8	0.44	10.3	2.8	1.8	1	0	0	1	1	1	0	A2L	zinc	ribbon	domain
DUF4199	PF13858.6	gi|345005618|ref|YP_004808471.1|	-	0.021	15.2	3.6	0.021	15.2	3.6	1.6	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF4199)
YtpI	PF14007.6	gi|345005618|ref|YP_004808471.1|	-	0.32	11.2	11.5	0.16	12.2	0.9	2.1	1	1	1	2	2	2	0	YtpI-like	protein
DUF347	PF03988.12	gi|345005618|ref|YP_004808471.1|	-	8.2	6.7	14.9	0.43	10.8	1.1	2.8	1	1	0	2	2	2	0	Repeat	of	Unknown	Function	(DUF347)
HTH_20	PF12840.7	gi|345005619|ref|YP_004808472.1|	-	4.3e-10	39.5	0.5	6.2e-10	39.0	0.5	1.2	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_IclR	PF09339.10	gi|345005619|ref|YP_004808472.1|	-	1.9e-05	24.4	1.3	2e-05	24.3	0.1	1.6	2	0	0	2	2	2	1	IclR	helix-turn-helix	domain
TrmB	PF01978.19	gi|345005619|ref|YP_004808472.1|	-	4.1e-05	23.4	0.0	0.00017	21.4	0.0	1.9	2	1	0	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
MarR_2	PF12802.7	gi|345005619|ref|YP_004808472.1|	-	0.0002	21.2	0.1	0.0003	20.6	0.1	1.4	1	0	0	1	1	1	1	MarR	family
DUF1492	PF07374.11	gi|345005619|ref|YP_004808472.1|	-	0.0019	18.3	0.0	0.003	17.7	0.0	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1492)
HTH_11	PF08279.12	gi|345005619|ref|YP_004808472.1|	-	0.016	15.1	0.1	0.025	14.5	0.1	1.2	1	0	0	1	1	1	0	HTH	domain
FUR	PF01475.19	gi|345005619|ref|YP_004808472.1|	-	0.045	13.9	0.0	0.062	13.5	0.0	1.3	1	0	0	1	1	1	0	Ferric	uptake	regulator	family
Rrf2	PF02082.20	gi|345005619|ref|YP_004808472.1|	-	0.05	14.0	0.0	0.087	13.2	0.0	1.3	1	0	0	1	1	1	0	Transcriptional	regulator
HTH_5	PF01022.20	gi|345005619|ref|YP_004808472.1|	-	0.067	13.1	0.0	0.093	12.6	0.0	1.2	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
HTH_7	PF02796.15	gi|345005619|ref|YP_004808472.1|	-	0.07	13.2	0.0	0.14	12.3	0.0	1.5	1	0	0	1	1	1	0	Helix-turn-helix	domain	of	resolvase
PadR	PF03551.14	gi|345005619|ref|YP_004808472.1|	-	0.17	11.8	0.0	0.28	11.2	0.0	1.3	1	0	0	1	1	1	0	Transcriptional	regulator	PadR-like	family
HIRA_B	PF09453.10	gi|345005620|ref|YP_004808473.1|	-	0.096	12.5	1.3	0.17	11.8	1.3	1.4	1	0	0	1	1	1	0	HIRA	B	motif
TFIIB	PF00382.19	gi|345005621|ref|YP_004808474.1|	-	1.4e-33	114.8	0.2	1.2e-15	57.2	0.0	2.2	2	0	0	2	2	2	2	Transcription	factor	TFIIB	repeat
TF_Zn_Ribbon	PF08271.12	gi|345005621|ref|YP_004808474.1|	-	7e-15	54.3	4.3	1.2e-14	53.5	4.3	1.4	1	0	0	1	1	1	1	TFIIB	zinc-binding
Cyclin_C	PF02984.19	gi|345005621|ref|YP_004808474.1|	-	0.0034	17.5	0.1	0.033	14.3	0.0	2.1	2	0	0	2	2	2	1	Cyclin,	C-terminal	domain
OrfB_Zn_ribbon	PF07282.11	gi|345005621|ref|YP_004808474.1|	-	0.093	12.7	0.5	0.19	11.6	0.5	1.4	1	0	0	1	1	1	0	Putative	transposase	DNA-binding	domain
IBR	PF01485.21	gi|345005621|ref|YP_004808474.1|	-	0.24	11.6	0.9	0.45	10.8	0.9	1.3	1	0	0	1	1	1	0	IBR	domain,	a	half	RING-finger	domain
Zn-ribbon_8	PF09723.10	gi|345005621|ref|YP_004808474.1|	-	3.9	7.7	7.2	3.6	7.8	1.0	2.4	1	1	1	2	2	2	0	Zinc	ribbon	domain
Copper-bind	PF00127.20	gi|345005622|ref|YP_004808475.1|	-	5.1e-12	46.1	0.0	7.5e-12	45.6	0.0	1.3	1	0	0	1	1	1	1	Copper	binding	proteins,	plastocyanin/azurin	family
TAT_signal	PF10518.9	gi|345005622|ref|YP_004808475.1|	-	0.0001	22.0	3.9	0.0001	22.0	3.9	1.9	2	1	0	2	2	2	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
PKD	PF00801.20	gi|345005622|ref|YP_004808475.1|	-	0.065	13.1	2.1	0.19	11.6	2.1	1.8	1	1	0	1	1	1	0	PKD	domain
Cu-oxidase_2	PF07731.14	gi|345005623|ref|YP_004808476.1|	-	3.5e-21	75.4	3.1	3.5e-21	75.4	3.1	2.1	2	0	0	2	2	2	1	Multicopper	oxidase
Cu-oxidase_3	PF07732.15	gi|345005623|ref|YP_004808476.1|	-	1.5e-13	50.8	3.1	4.9e-07	29.8	0.0	3.4	2	1	1	3	3	3	2	Multicopper	oxidase
TAT_signal	PF10518.9	gi|345005623|ref|YP_004808476.1|	-	0.24	11.3	0.8	0.42	10.5	0.8	1.4	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
Multi_Drug_Res	PF00893.19	gi|345005625|ref|YP_004808478.1|	-	5.9e-29	100.6	5.7	7.9e-29	100.2	5.7	1.1	1	0	0	1	1	1	1	Small	Multidrug	Resistance	protein
BaxI_1	PF12811.7	gi|345005625|ref|YP_004808478.1|	-	0.06	12.9	5.2	0.078	12.5	5.2	1.3	1	1	0	1	1	1	0	Bax	inhibitor	1	like
EamA	PF00892.20	gi|345005625|ref|YP_004808478.1|	-	0.13	12.4	11.2	0.25	11.5	11.2	1.5	1	1	0	1	1	1	0	EamA-like	transporter	family
DUF4577	PF15145.6	gi|345005625|ref|YP_004808478.1|	-	0.16	12.0	0.8	16	5.6	0.0	2.1	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4577)
ELFV_dehydrog	PF00208.21	gi|345005626|ref|YP_004808479.1|	-	1.5e-71	241.0	0.2	1.9e-71	240.6	0.2	1.1	1	0	0	1	1	1	1	Glutamate/Leucine/Phenylalanine/Valine	dehydrogenase
ELFV_dehydrog_N	PF02812.18	gi|345005626|ref|YP_004808479.1|	-	1.3e-56	190.0	0.0	2.3e-56	189.2	0.0	1.4	1	0	0	1	1	1	1	Glu/Leu/Phe/Val	dehydrogenase,	dimerisation	domain
2-Hacid_dh_C	PF02826.19	gi|345005626|ref|YP_004808479.1|	-	0.00069	19.0	0.0	0.0013	18.1	0.0	1.5	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
IlvN	PF07991.12	gi|345005626|ref|YP_004808479.1|	-	0.13	11.8	0.0	0.26	10.9	0.0	1.5	1	0	0	1	1	1	0	Acetohydroxy	acid	isomeroreductase,	NADPH-binding	domain
zf-C2HC5	PF06221.13	gi|345005627|ref|YP_004808480.1|	-	0.0003	20.7	0.3	0.00035	20.5	0.3	1.1	1	0	0	1	1	1	1	Putative	zinc	finger	motif,	C2HC5-type
DZR	PF12773.7	gi|345005627|ref|YP_004808480.1|	-	0.0071	16.3	0.7	0.0077	16.2	0.7	1.1	1	0	0	1	1	1	1	Double	zinc	ribbon
RecR	PF02132.15	gi|345005627|ref|YP_004808480.1|	-	0.031	13.8	1.5	0.04	13.5	1.5	1.2	1	0	0	1	1	1	0	RecR	protein
Anti-TRAP	PF15777.5	gi|345005627|ref|YP_004808480.1|	-	0.051	13.5	1.5	0.055	13.4	1.5	1.1	1	0	0	1	1	1	0	Tryptophan	RNA-binding	attenuator	protein	inhibitory	protein
Zn-ribbon_8	PF09723.10	gi|345005627|ref|YP_004808480.1|	-	0.16	12.1	4.6	0.47	10.6	4.1	1.9	1	1	1	2	2	2	0	Zinc	ribbon	domain
zf-Mss51	PF13824.6	gi|345005627|ref|YP_004808480.1|	-	1.2	9.3	4.9	5.9	7.1	0.2	2.1	1	1	1	2	2	2	0	Zinc-finger	of	mitochondrial	splicing	suppressor	51
BAT	PF15915.5	gi|345005628|ref|YP_004808481.1|	-	1.9e-40	138.3	4.8	1.9e-40	138.3	4.8	3.3	3	0	0	3	3	3	1	GAF	and	HTH_10	associated	domain
GAF_2	PF13185.6	gi|345005628|ref|YP_004808481.1|	-	6.6e-25	88.0	4.1	9.5e-16	58.3	0.2	2.9	2	0	0	2	2	2	2	GAF	domain
HTH_10	PF04967.12	gi|345005628|ref|YP_004808481.1|	-	2.3e-16	59.3	0.0	7e-16	57.8	0.0	2.0	1	0	0	1	1	1	1	HTH	DNA	binding	domain
PAS_4	PF08448.10	gi|345005628|ref|YP_004808481.1|	-	6.8e-13	48.8	4.0	1.1e-10	41.7	0.2	4.2	3	1	0	3	3	3	1	PAS	fold
GAF_3	PF13492.6	gi|345005628|ref|YP_004808481.1|	-	1.2e-12	48.3	0.7	4.9e-07	30.2	0.0	3.5	3	0	0	3	3	3	2	GAF	domain
Response_reg	PF00072.24	gi|345005628|ref|YP_004808481.1|	-	1.5e-11	44.4	0.1	8.3e-11	42.0	0.0	2.4	2	0	0	2	2	2	1	Response	regulator	receiver	domain
GAF	PF01590.26	gi|345005628|ref|YP_004808481.1|	-	2.1e-08	34.9	0.4	0.005	17.5	0.0	3.5	3	0	0	3	3	3	2	GAF	domain
PAS_9	PF13426.7	gi|345005628|ref|YP_004808481.1|	-	1.8e-07	31.3	0.1	9.9e-06	25.8	0.0	2.8	2	0	0	2	2	2	1	PAS	domain
PAS	PF00989.25	gi|345005628|ref|YP_004808481.1|	-	0.00011	22.2	1.4	0.62	10.1	0.0	4.0	4	0	0	4	4	4	2	PAS	fold
Sigma70_r4	PF04545.16	gi|345005628|ref|YP_004808481.1|	-	0.0057	16.2	0.1	0.082	12.4	0.0	3.0	3	0	0	3	3	3	1	Sigma-70,	region	4
PAS_8	PF13188.7	gi|345005628|ref|YP_004808481.1|	-	0.025	14.6	0.1	0.15	12.1	0.0	2.4	2	0	0	2	2	2	0	PAS	domain
PAS_7	PF12860.7	gi|345005628|ref|YP_004808481.1|	-	0.036	14.2	1.8	2.6	8.3	0.0	3.7	3	1	0	3	3	3	0	PAS	fold
GATase	PF00117.28	gi|345005629|ref|YP_004808482.1|	-	1.4e-18	67.3	0.0	1.8e-18	67.0	0.0	1.1	1	0	0	1	1	1	1	Glutamine	amidotransferase	class-I
Peptidase_C26	PF07722.13	gi|345005629|ref|YP_004808482.1|	-	2.7e-10	40.4	2.3	5.7e-09	36.0	2.3	2.4	1	1	0	1	1	1	1	Peptidase	C26
SecY	PF00344.20	gi|345005632|ref|YP_004808485.1|	-	8.3e-71	238.7	16.6	1e-70	238.4	16.6	1.1	1	0	0	1	1	1	1	SecY	translocase
Plug_translocon	PF10559.9	gi|345005632|ref|YP_004808485.1|	-	2.8e-09	36.7	0.7	1e-08	34.9	0.7	2.1	1	0	0	1	1	1	1	Plug	domain	of	Sec61p
Phage_holin_5_1	PF06946.11	gi|345005632|ref|YP_004808485.1|	-	0.01	16.2	0.3	0.058	13.8	0.1	2.4	2	0	0	2	2	2	0	Bacteriophage	A118-like	holin,	Hol118
Ribosomal_L27A	PF00828.19	gi|345005633|ref|YP_004808486.1|	-	5.1e-17	62.7	0.0	8.6e-17	62.0	0.0	1.4	1	0	0	1	1	1	1	Ribosomal	proteins	50S-L15,	50S-L18e,	60S-L27A
Ribosomal_L30	PF00327.20	gi|345005634|ref|YP_004808487.1|	-	3.3e-08	33.3	0.0	5.2e-08	32.6	0.0	1.3	1	0	0	1	1	1	1	Ribosomal	protein	L30p/L7e
Ribosomal_S5_C	PF03719.15	gi|345005635|ref|YP_004808488.1|	-	5.8e-23	80.1	0.1	8.9e-23	79.5	0.1	1.3	1	0	0	1	1	1	1	Ribosomal	protein	S5,	C-terminal	domain
Ribosomal_S5	PF00333.20	gi|345005635|ref|YP_004808488.1|	-	4.4e-21	74.6	0.2	4.4e-21	74.6	0.2	2.4	3	0	0	3	3	3	1	Ribosomal	protein	S5,	N-terminal	domain
DUF1421	PF07223.11	gi|345005635|ref|YP_004808488.1|	-	0.12	12.2	0.1	1.5	8.7	0.0	2.4	2	0	0	2	2	2	0	UBA-like	domain	(DUF1421)
Ribosomal_L5e	PF17144.4	gi|345005636|ref|YP_004808489.1|	-	6.9e-29	100.9	0.0	7.5e-18	65.0	0.0	2.3	1	1	1	2	2	2	2	Ribosomal	large	subunit	proteins	60S	L5,	and	50S	L18
Ribosomal_L18p	PF00861.22	gi|345005636|ref|YP_004808489.1|	-	0.00014	22.2	0.0	0.00023	21.5	0.0	1.3	1	0	0	1	1	1	1	Ribosomal	L18	of	archaea,	bacteria,	mitoch.	and	chloroplast
Ribosomal_L19e	PF01280.20	gi|345005637|ref|YP_004808490.1|	-	2.4e-51	173.6	2.3	2.6e-51	173.5	2.3	1.0	1	0	0	1	1	1	1	Ribosomal	protein	L19e
Ribosomal_L32e	PF01655.18	gi|345005638|ref|YP_004808491.1|	-	7.3e-34	116.4	1.2	2.6e-33	114.7	0.7	1.9	2	0	0	2	2	2	1	Ribosomal	protein	L32
HHH_5	PF14520.6	gi|345005638|ref|YP_004808491.1|	-	2.3e-14	53.7	0.3	2.5e-13	50.4	0.2	2.4	2	0	0	2	2	2	1	Helix-hairpin-helix	domain
HHH	PF00633.23	gi|345005638|ref|YP_004808491.1|	-	2.7e-08	33.3	0.7	0.012	15.4	0.1	3.0	3	0	0	3	3	3	2	Helix-hairpin-helix	motif
DNA_pol_lambd_f	PF10391.9	gi|345005638|ref|YP_004808491.1|	-	2.5e-07	30.4	0.0	9e-07	28.6	0.0	2.0	1	1	1	2	2	2	1	Fingers	domain	of	DNA	polymerase	lambda
HHH_2	PF12826.7	gi|345005638|ref|YP_004808491.1|	-	1.1e-06	28.6	0.1	3.1e-06	27.2	0.1	1.8	1	0	0	1	1	1	1	Helix-hairpin-helix	motif
Cdd1	PF11731.8	gi|345005638|ref|YP_004808491.1|	-	6.4e-05	23.1	0.0	0.00041	20.5	0.0	2.3	2	1	1	3	3	3	1	Pathogenicity	locus
HHH_3	PF12836.7	gi|345005638|ref|YP_004808491.1|	-	0.0007	19.8	0.1	0.27	11.5	0.1	2.7	1	1	1	2	2	2	1	Helix-hairpin-helix	motif
HHH_8	PF14716.6	gi|345005638|ref|YP_004808491.1|	-	0.0066	16.8	0.8	0.46	10.9	0.1	2.8	2	1	1	3	3	3	1	Helix-hairpin-helix	domain
RNA_pol_A_CTD	PF03118.15	gi|345005638|ref|YP_004808491.1|	-	0.048	13.4	0.0	0.11	12.3	0.0	1.6	1	0	0	1	1	1	0	Bacterial	RNA	polymerase,	alpha	chain	C	terminal	domain
DUF4332	PF14229.6	gi|345005638|ref|YP_004808491.1|	-	0.072	13.3	0.0	0.21	11.9	0.0	1.7	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4332)
RRN3	PF05327.11	gi|345005638|ref|YP_004808491.1|	-	0.54	8.7	2.0	0.71	8.3	2.0	1.1	1	0	0	1	1	1	0	RNA	polymerase	I	specific	transcription	initiation	factor	RRN3
CDC45	PF02724.14	gi|345005638|ref|YP_004808491.1|	-	3.6	5.8	7.0	4.4	5.5	7.0	1.1	1	0	0	1	1	1	0	CDC45-like	protein
Ribosomal_L6	PF00347.23	gi|345005639|ref|YP_004808492.1|	-	1.3e-27	96.2	0.1	7.9e-13	48.9	0.0	2.0	2	0	0	2	2	2	2	Ribosomal	protein	L6
DUF2884	PF11101.8	gi|345005639|ref|YP_004808492.1|	-	0.065	12.7	0.0	0.13	11.8	0.0	1.5	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF2884)
BON	PF04972.17	gi|345005639|ref|YP_004808492.1|	-	0.2	12.0	4.1	5.1	7.5	0.1	3.1	3	1	0	3	3	3	0	BON	domain
DUF3060	PF11259.8	gi|345005639|ref|YP_004808492.1|	-	2	8.2	5.5	0.47	10.2	0.4	2.5	3	1	0	3	3	3	0	Protein	of	unknown	function	(DUF3060)
Ribosomal_S8	PF00410.19	gi|345005640|ref|YP_004808493.1|	-	1.5e-23	83.1	0.0	1.8e-23	82.9	0.0	1.1	1	0	0	1	1	1	1	Ribosomal	protein	S8
Glyco_tranf_2_3	PF13641.6	gi|345005640|ref|YP_004808493.1|	-	0.025	14.4	0.0	0.031	14.2	0.0	1.0	1	0	0	1	1	1	0	Glycosyltransferase	like	family	2
Ribosomal_S14	PF00253.21	gi|345005641|ref|YP_004808494.1|	-	2.7e-10	39.9	4.8	3.4e-10	39.5	4.8	1.1	1	0	0	1	1	1	1	Ribosomal	protein	S14p/S29e
zinc_ribbon_10	PF10058.9	gi|345005641|ref|YP_004808494.1|	-	0.059	13.1	1.0	0.12	12.2	1.0	1.5	1	1	0	1	1	1	0	Predicted	integral	membrane	zinc-ribbon	metal-binding	protein
Ribosomal_L5_C	PF00673.21	gi|345005642|ref|YP_004808495.1|	-	3.2e-19	68.9	0.0	6.9e-19	67.8	0.0	1.6	1	1	0	1	1	1	1	ribosomal	L5P	family	C-terminus
Ribosomal_L5	PF00281.19	gi|345005642|ref|YP_004808495.1|	-	1.1e-16	60.9	0.1	1.8e-16	60.2	0.1	1.4	1	0	0	1	1	1	1	Ribosomal	protein	L5
Ribosomal_S4e	PF00900.20	gi|345005643|ref|YP_004808496.1|	-	3e-19	68.7	0.0	5.1e-19	67.9	0.0	1.4	1	0	0	1	1	1	1	Ribosomal	family	S4e
RS4NT	PF08071.12	gi|345005643|ref|YP_004808496.1|	-	2.6e-10	40.2	0.0	4.3e-10	39.5	0.0	1.4	1	0	0	1	1	1	1	RS4NT	(NUC023)	domain
S4	PF01479.25	gi|345005643|ref|YP_004808496.1|	-	0.003	17.2	0.0	0.0062	16.2	0.0	1.6	1	0	0	1	1	1	1	S4	domain
BiPBP_C	PF06832.12	gi|345005643|ref|YP_004808496.1|	-	0.0056	16.7	0.1	0.033	14.2	0.0	2.2	3	0	0	3	3	3	1	Penicillin-Binding	Protein	C-terminus	Family
KOW	PF00467.29	gi|345005643|ref|YP_004808496.1|	-	0.028	14.4	0.1	0.084	12.9	0.1	1.8	1	0	0	1	1	1	0	KOW	motif
GET2	PF08690.10	gi|345005643|ref|YP_004808496.1|	-	0.14	11.8	0.0	0.21	11.2	0.0	1.2	1	0	0	1	1	1	0	GET	complex	subunit	GET2
Cadherin-like	PF12733.7	gi|345005643|ref|YP_004808496.1|	-	0.38	11.3	3.2	1	9.9	2.9	1.8	1	1	0	1	1	1	0	Cadherin-like	beta	sandwich	domain
Ribosomal_L26	PF16906.5	gi|345005644|ref|YP_004808497.1|	-	2.9e-21	75.7	0.0	3.3e-21	75.6	0.0	1.0	1	0	0	1	1	1	1	Ribosomal	proteins	L26	eukaryotic,	L24P	archaeal
KOW	PF00467.29	gi|345005644|ref|YP_004808497.1|	-	8.8e-06	25.5	2.3	8.8e-06	25.5	2.3	2.0	1	1	1	2	2	2	1	KOW	motif
Ribosomal_L14	PF00238.19	gi|345005645|ref|YP_004808498.1|	-	3.1e-36	124.2	0.3	3.7e-36	123.9	0.3	1.0	1	0	0	1	1	1	1	Ribosomal	protein	L14p/L23e
Ribosomal_S17	PF00366.20	gi|345005646|ref|YP_004808499.1|	-	9.2e-27	93.0	2.6	1.1e-26	92.7	2.6	1.1	1	0	0	1	1	1	1	Ribosomal	protein	S17
Ribosomal_S17_N	PF16205.5	gi|345005646|ref|YP_004808499.1|	-	0.0069	16.7	0.0	0.013	15.9	0.0	1.5	1	0	0	1	1	1	1	Ribosomal_S17	N-terminal
DUF4272	PF14094.6	gi|345005646|ref|YP_004808499.1|	-	0.16	11.2	0.0	0.25	10.6	0.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4272)
UPF0086	PF01868.16	gi|345005647|ref|YP_004808500.1|	-	2.6e-27	94.5	0.0	3.2e-27	94.3	0.0	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	UPF0086
Ribosomal_L29	PF00831.23	gi|345005648|ref|YP_004808501.1|	-	1.7e-18	66.4	0.0	2e-18	66.1	0.0	1.1	1	0	0	1	1	1	1	Ribosomal	L29	protein
Ribosomal_S3_C	PF00189.20	gi|345005649|ref|YP_004808502.1|	-	1e-19	70.8	0.7	1.8e-19	70.0	0.7	1.4	1	0	0	1	1	1	1	Ribosomal	protein	S3,	C-terminal	domain
KH_2	PF07650.17	gi|345005649|ref|YP_004808502.1|	-	1.3e-15	56.9	0.0	3.2e-15	55.7	0.0	1.7	1	0	0	1	1	1	1	KH	domain
KH_5	PF13184.6	gi|345005649|ref|YP_004808502.1|	-	0.0031	17.6	0.0	0.021	14.9	0.0	2.4	2	0	0	2	2	2	1	NusA-like	KH	domain
KH_1	PF00013.29	gi|345005649|ref|YP_004808502.1|	-	0.014	15.2	0.7	0.051	13.4	0.3	2.2	2	0	0	2	2	2	0	KH	domain
Ribosomal_L22	PF00237.19	gi|345005650|ref|YP_004808503.1|	-	6.5e-20	71.3	0.0	8e-20	71.0	0.0	1.1	1	0	0	1	1	1	1	Ribosomal	protein	L22p/L17e
Ribosomal_S19	PF00203.21	gi|345005651|ref|YP_004808504.1|	-	2.3e-28	97.9	0.0	3.1e-28	97.5	0.0	1.2	1	0	0	1	1	1	1	Ribosomal	protein	S19
Ribosomal_L2_C	PF03947.18	gi|345005652|ref|YP_004808505.1|	-	7.7e-45	152.2	2.9	1.1e-44	151.6	2.9	1.2	1	0	0	1	1	1	1	Ribosomal	Proteins	L2,	C-terminal	domain
Ribosomal_L2	PF00181.23	gi|345005652|ref|YP_004808505.1|	-	2.7e-15	56.1	0.0	8.7e-15	54.4	0.0	1.9	1	0	0	1	1	1	1	Ribosomal	Proteins	L2,	RNA	binding	domain
Ribosomal_L23	PF00276.20	gi|345005653|ref|YP_004808506.1|	-	5.8e-16	58.6	0.6	4.1e-15	55.9	0.6	1.9	1	1	0	1	1	1	1	Ribosomal	protein	L23
LapD_MoxY_N	PF16448.5	gi|345005653|ref|YP_004808506.1|	-	0.054	13.4	0.0	0.066	13.1	0.0	1.2	1	0	0	1	1	1	0	LapD/MoxY	periplasmic	domain
Ribosomal_L4	PF00573.22	gi|345005654|ref|YP_004808507.1|	-	4.7e-45	153.6	0.1	5.3e-45	153.5	0.1	1.0	1	0	0	1	1	1	1	Ribosomal	protein	L4/L1	family
FAA_hydrolase	PF01557.18	gi|345005654|ref|YP_004808507.1|	-	0.0064	16.2	0.1	0.0077	15.9	0.1	1.1	1	0	0	1	1	1	1	Fumarylacetoacetate	(FAA)	hydrolase	family
RFamide_26RFa	PF11109.8	gi|345005654|ref|YP_004808507.1|	-	0.11	13.0	0.2	0.42	11.1	0.0	1.9	2	0	0	2	2	2	0	Orexigenic	neuropeptide	Qrfp/P518
Ribosomal_L3	PF00297.22	gi|345005655|ref|YP_004808508.1|	-	7.6e-103	344.3	0.1	4.3e-102	341.9	0.1	1.9	1	1	0	1	1	1	1	Ribosomal	protein	L3
Methyltrn_RNA_3	PF02598.17	gi|345005656|ref|YP_004808509.1|	-	1.2e-69	235.0	0.0	1.4e-69	234.8	0.0	1.0	1	0	0	1	1	1	1	Putative	RNA	methyltransferase
eIF-1a	PF01176.19	gi|345005656|ref|YP_004808509.1|	-	0.00097	18.9	0.3	0.0024	17.6	0.3	1.7	1	0	0	1	1	1	1	Translation	initiation	factor	1A	/	IF-1
Glyoxalase	PF00903.25	gi|345005657|ref|YP_004808510.1|	-	4.9e-08	33.2	0.0	6.2e-08	32.9	0.0	1.1	1	0	0	1	1	1	1	Glyoxalase/Bleomycin	resistance	protein/Dioxygenase	superfamily
Glyoxalase_3	PF13468.6	gi|345005657|ref|YP_004808510.1|	-	0.015	15.4	0.1	3.4	7.8	0.0	2.1	2	0	0	2	2	2	0	Glyoxalase-like	domain
Glyoxalase_6	PF18029.1	gi|345005657|ref|YP_004808510.1|	-	0.042	14.7	0.0	0.059	14.2	0.0	1.2	1	0	0	1	1	1	0	Glyoxalase-like	domain
Virul_fac_BrkB	PF03631.15	gi|345005659|ref|YP_004808512.1|	-	5.2e-31	108.2	24.3	7.6e-31	107.6	24.3	1.2	1	0	0	1	1	1	1	Virulence	factor	BrkB
DUF3267	PF11667.8	gi|345005659|ref|YP_004808512.1|	-	0.45	10.8	4.0	17	5.8	0.8	2.6	2	0	0	2	2	2	0	Putative	zincin	peptidase
DUF1028	PF06267.12	gi|345005660|ref|YP_004808513.1|	-	6.4e-60	202.3	0.3	7.4e-60	202.0	0.3	1.0	1	0	0	1	1	1	1	Family	of	unknown	function	(DUF1028)
Gag_p10	PF02337.17	gi|345005660|ref|YP_004808513.1|	-	0.015	15.2	0.0	0.029	14.3	0.0	1.4	1	0	0	1	1	1	0	Retroviral	GAG	p10	protein
Peptidase_M32	PF02074.15	gi|345005661|ref|YP_004808514.1|	-	1.2e-176	588.3	0.0	1.4e-176	588.1	0.0	1.0	1	0	0	1	1	1	1	Carboxypeptidase	Taq	(M32)	metallopeptidase
Bac_luciferase	PF00296.20	gi|345005662|ref|YP_004808515.1|	-	1.9e-61	208.2	0.5	1.1e-59	202.4	0.5	2.0	1	1	0	1	1	1	1	Luciferase-like	monooxygenase
adh_short_C2	PF13561.6	gi|345005663|ref|YP_004808516.1|	-	1.9e-54	184.7	0.8	2.2e-54	184.5	0.8	1.0	1	0	0	1	1	1	1	Enoyl-(Acyl	carrier	protein)	reductase
adh_short	PF00106.25	gi|345005663|ref|YP_004808516.1|	-	5e-45	153.4	0.1	6e-45	153.1	0.1	1.1	1	0	0	1	1	1	1	short	chain	dehydrogenase
KR	PF08659.10	gi|345005663|ref|YP_004808516.1|	-	7.6e-10	39.0	0.2	3.3e-09	36.9	0.2	1.9	1	1	0	1	1	1	1	KR	domain
Epimerase	PF01370.21	gi|345005663|ref|YP_004808516.1|	-	0.002	17.6	0.1	0.003	17.1	0.1	1.3	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
Glu_dehyd_C	PF16912.5	gi|345005663|ref|YP_004808516.1|	-	0.019	14.4	0.1	0.048	13.1	0.1	1.6	2	0	0	2	2	2	0	Glucose	dehydrogenase	C-terminus
3Beta_HSD	PF01073.19	gi|345005663|ref|YP_004808516.1|	-	0.025	13.6	0.1	0.032	13.2	0.1	1.1	1	0	0	1	1	1	0	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
Ldh_1_N	PF00056.23	gi|345005663|ref|YP_004808516.1|	-	0.13	12.4	0.0	0.22	11.6	0.0	1.4	1	0	0	1	1	1	0	lactate/malate	dehydrogenase,	NAD	binding	domain
Peptidase_M28	PF04389.17	gi|345005664|ref|YP_004808517.1|	-	1.1e-17	64.3	0.1	2.8e-17	63.1	0.1	1.6	1	0	0	1	1	1	1	Peptidase	family	M28
Peptidase_M20	PF01546.28	gi|345005664|ref|YP_004808517.1|	-	0.013	15.2	0.0	0.047	13.4	0.0	1.8	2	1	0	2	2	2	0	Peptidase	family	M20/M25/M40
PA	PF02225.22	gi|345005664|ref|YP_004808517.1|	-	0.044	13.8	0.0	0.095	12.7	0.0	1.6	1	0	0	1	1	1	0	PA	domain
zinc_ribbon_13	PF09855.9	gi|345005665|ref|YP_004808518.1|	-	0.14	12.3	0.0	0.2	11.9	0.0	1.2	1	0	0	1	1	1	0	Nucleic-acid-binding	protein	containing	Zn-ribbon	domain	(DUF2082)
RVT_3	PF13456.6	gi|345005666|ref|YP_004808519.1|	-	8.5e-11	41.7	0.0	1.4e-10	41.1	0.0	1.3	1	0	0	1	1	1	1	Reverse	transcriptase-like
RNase_H	PF00075.24	gi|345005666|ref|YP_004808519.1|	-	6.1e-09	36.2	0.0	1.6e-08	34.9	0.0	1.8	2	1	0	2	2	2	1	RNase	H
XdhC_C	PF13478.6	gi|345005666|ref|YP_004808519.1|	-	0.094	13.2	0.0	3.6	8.1	0.0	2.3	2	0	0	2	2	2	0	XdhC	Rossmann	domain
Aldedh	PF00171.22	gi|345005667|ref|YP_004808520.1|	-	3.6e-149	497.2	0.0	4.4e-149	496.9	0.0	1.0	1	0	0	1	1	1	1	Aldehyde	dehydrogenase	family
NAD_binding_4	PF07993.12	gi|345005668|ref|YP_004808521.1|	-	7.2e-45	153.2	0.0	9e-45	152.8	0.0	1.1	1	0	0	1	1	1	1	Male	sterility	protein
Epimerase	PF01370.21	gi|345005668|ref|YP_004808521.1|	-	1.7e-19	70.3	0.0	2.4e-19	69.8	0.0	1.2	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
3Beta_HSD	PF01073.19	gi|345005668|ref|YP_004808521.1|	-	1.2e-12	47.5	0.0	1.6e-12	47.0	0.0	1.1	1	0	0	1	1	1	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
GDP_Man_Dehyd	PF16363.5	gi|345005668|ref|YP_004808521.1|	-	5.3e-12	45.8	0.0	7e-12	45.4	0.0	1.1	1	0	0	1	1	1	1	GDP-mannose	4,6	dehydratase
NAD_binding_10	PF13460.6	gi|345005668|ref|YP_004808521.1|	-	0.00024	21.0	0.0	0.00041	20.3	0.0	1.4	1	0	0	1	1	1	1	NAD(P)H-binding
RmlD_sub_bind	PF04321.17	gi|345005668|ref|YP_004808521.1|	-	0.00058	19.0	0.2	0.0017	17.5	0.2	1.7	1	1	0	1	1	1	1	RmlD	substrate	binding	domain
Polysacc_synt_2	PF02719.15	gi|345005668|ref|YP_004808521.1|	-	0.018	14.2	0.0	0.024	13.8	0.0	1.2	1	0	0	1	1	1	0	Polysaccharide	biosynthesis	protein
GCS2	PF04107.13	gi|345005669|ref|YP_004808522.1|	-	1.7e-72	244.2	0.2	2.4e-72	243.8	0.2	1.2	1	0	0	1	1	1	1	Glutamate-cysteine	ligase	family	2(GCS2)
Fibrillarin	PF01269.17	gi|345005670|ref|YP_004808523.1|	-	3.5e-55	186.6	0.0	4.1e-55	186.4	0.0	1.0	1	0	0	1	1	1	1	Fibrillarin
Nop	PF01798.18	gi|345005671|ref|YP_004808524.1|	-	5.7e-39	133.9	0.0	9.3e-39	133.2	0.0	1.4	1	1	0	1	1	1	1	snoRNA	binding	domain,	fibrillarin
Peripla_BP_6	PF13458.6	gi|345005672|ref|YP_004808525.1|	-	4e-29	102.4	11.3	4.6e-29	102.2	11.3	1.1	1	0	0	1	1	1	1	Periplasmic	binding	protein
ANF_receptor	PF01094.28	gi|345005672|ref|YP_004808525.1|	-	9.5e-12	44.7	0.0	2.4e-11	43.3	0.0	1.6	1	1	0	1	1	1	1	Receptor	family	ligand	binding	region
Peripla_BP_5	PF13433.6	gi|345005672|ref|YP_004808525.1|	-	3.9e-05	22.8	0.0	0.0019	17.3	0.0	2.1	2	0	0	2	2	2	2	Periplasmic	binding	protein	domain
TAT_signal	PF10518.9	gi|345005672|ref|YP_004808525.1|	-	0.00069	19.4	1.5	0.00069	19.4	1.5	2.8	1	1	1	2	2	2	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
T6SS-SciN	PF12790.7	gi|345005672|ref|YP_004808525.1|	-	0.11	12.2	0.0	0.2	11.4	0.0	1.3	1	0	0	1	1	1	0	Type	VI	secretion	lipoprotein,	VasD,	EvfM,	TssJ,	VC_A0113
BPD_transp_2	PF02653.16	gi|345005673|ref|YP_004808526.1|	-	4.9e-39	134.1	38.9	6e-39	133.8	38.9	1.1	1	0	0	1	1	1	1	Branched-chain	amino	acid	transport	system	/	permease	component
BIV_Env	PF05858.12	gi|345005673|ref|YP_004808526.1|	-	0.11	10.6	0.4	0.15	10.2	0.4	1.3	1	0	0	1	1	1	0	Bovine	immunodeficiency	virus	surface	protein	(SU)
BPD_transp_2	PF02653.16	gi|345005674|ref|YP_004808527.1|	-	3.5e-41	141.2	37.6	3.5e-41	141.2	37.6	1.3	2	0	0	2	2	2	1	Branched-chain	amino	acid	transport	system	/	permease	component
ABC_tran	PF00005.27	gi|345005675|ref|YP_004808528.1|	-	1.9e-31	109.4	0.0	2.9e-31	108.8	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|345005675|ref|YP_004808528.1|	-	7.4e-09	35.8	0.7	0.00013	21.9	0.1	2.1	2	0	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
BCA_ABC_TP_C	PF12399.8	gi|345005675|ref|YP_004808528.1|	-	7.4e-08	32.1	0.0	1.3e-07	31.4	0.0	1.4	1	0	0	1	1	1	1	Branched-chain	amino	acid	ATP-binding	cassette	transporter
SMC_N	PF02463.19	gi|345005675|ref|YP_004808528.1|	-	1.4e-05	24.7	1.6	0.00013	21.5	1.6	2.0	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_23	PF13476.6	gi|345005675|ref|YP_004808528.1|	-	0.00082	19.9	0.1	0.0014	19.1	0.1	1.5	1	1	0	1	1	1	1	AAA	domain
AAA_29	PF13555.6	gi|345005675|ref|YP_004808528.1|	-	0.0014	18.3	0.1	0.0028	17.4	0.1	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_27	PF13514.6	gi|345005675|ref|YP_004808528.1|	-	0.002	17.7	0.3	0.018	14.6	0.0	2.0	2	0	0	2	2	2	1	AAA	domain
AAA_16	PF13191.6	gi|345005675|ref|YP_004808528.1|	-	0.0037	17.7	0.6	0.014	15.8	0.1	2.0	1	1	1	2	2	2	1	AAA	ATPase	domain
AAA_30	PF13604.6	gi|345005675|ref|YP_004808528.1|	-	0.0084	15.8	1.7	0.55	9.9	0.0	2.4	1	1	0	2	2	2	1	AAA	domain
RsgA_GTPase	PF03193.16	gi|345005675|ref|YP_004808528.1|	-	0.039	13.9	0.2	0.088	12.7	0.0	1.7	2	0	0	2	2	2	0	RsgA	GTPase
MukB	PF04310.12	gi|345005675|ref|YP_004808528.1|	-	0.039	13.8	0.1	0.07	12.9	0.1	1.4	1	0	0	1	1	1	0	MukB	N-terminal
MMR_HSR1	PF01926.23	gi|345005675|ref|YP_004808528.1|	-	0.057	13.5	2.2	0.31	11.1	1.0	2.5	2	1	0	2	2	2	0	50S	ribosome-binding	GTPase
Aldedh	PF00171.22	gi|345005675|ref|YP_004808528.1|	-	0.16	10.4	0.3	0.25	9.8	0.3	1.2	1	0	0	1	1	1	0	Aldehyde	dehydrogenase	family
AAA_24	PF13479.6	gi|345005675|ref|YP_004808528.1|	-	0.39	10.4	1.5	2	8.1	0.1	2.4	2	1	1	3	3	3	0	AAA	domain
ABC_tran	PF00005.27	gi|345005676|ref|YP_004808529.1|	-	2.1e-30	106.0	0.0	2.9e-30	105.6	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|345005676|ref|YP_004808529.1|	-	1.4e-11	44.7	0.1	6.9e-05	22.8	0.0	2.1	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|345005676|ref|YP_004808529.1|	-	1.5e-05	24.6	0.2	0.0015	18.0	0.1	2.2	2	0	0	2	2	2	1	RecF/RecN/SMC	N	terminal	domain
AAA_29	PF13555.6	gi|345005676|ref|YP_004808529.1|	-	0.00026	20.6	0.0	0.00055	19.6	0.0	1.5	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_30	PF13604.6	gi|345005676|ref|YP_004808529.1|	-	0.0025	17.6	0.0	0.0051	16.5	0.0	1.5	1	0	0	1	1	1	1	AAA	domain
AAA_23	PF13476.6	gi|345005676|ref|YP_004808529.1|	-	0.0025	18.3	0.0	0.0043	17.6	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
NB-ARC	PF00931.22	gi|345005676|ref|YP_004808529.1|	-	0.012	14.8	0.3	0.02	14.1	0.3	1.3	1	0	0	1	1	1	0	NB-ARC	domain
MMR_HSR1	PF01926.23	gi|345005676|ref|YP_004808529.1|	-	0.012	15.7	0.0	0.021	14.9	0.0	1.4	1	0	0	1	1	1	0	50S	ribosome-binding	GTPase
AAA_16	PF13191.6	gi|345005676|ref|YP_004808529.1|	-	0.014	15.8	0.0	0.016	15.6	0.0	1.5	1	1	0	1	1	1	0	AAA	ATPase	domain
AAA_15	PF13175.6	gi|345005676|ref|YP_004808529.1|	-	0.015	15.1	0.0	0.32	10.6	0.0	2.0	2	0	0	2	2	2	0	AAA	ATPase	domain
AAA_27	PF13514.6	gi|345005676|ref|YP_004808529.1|	-	0.021	14.5	0.0	0.043	13.4	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
AAA_22	PF13401.6	gi|345005676|ref|YP_004808529.1|	-	0.023	15.0	0.0	0.07	13.4	0.0	1.7	2	0	0	2	2	2	0	AAA	domain
RsgA_GTPase	PF03193.16	gi|345005676|ref|YP_004808529.1|	-	0.03	14.2	0.0	0.063	13.2	0.0	1.5	2	0	0	2	2	2	0	RsgA	GTPase
AAA_33	PF13671.6	gi|345005676|ref|YP_004808529.1|	-	0.042	14.0	0.0	0.22	11.6	0.1	2.0	2	1	0	2	2	2	0	AAA	domain
AAA_7	PF12775.7	gi|345005676|ref|YP_004808529.1|	-	0.056	13.0	0.1	0.095	12.2	0.1	1.3	1	0	0	1	1	1	0	P-loop	containing	dynein	motor	region
SbcCD_C	PF13558.6	gi|345005676|ref|YP_004808529.1|	-	0.062	13.5	0.6	1.1	9.5	0.6	2.3	1	1	0	1	1	1	0	Putative	exonuclease	SbcCD,	C	subunit
NACHT	PF05729.12	gi|345005676|ref|YP_004808529.1|	-	0.078	12.9	0.1	0.15	11.9	0.1	1.5	1	0	0	1	1	1	0	NACHT	domain
IstB_IS21	PF01695.17	gi|345005676|ref|YP_004808529.1|	-	0.13	12.0	0.3	0.3	10.8	0.1	1.7	2	1	1	3	3	2	0	IstB-like	ATP	binding	protein
AAA_5	PF07728.14	gi|345005676|ref|YP_004808529.1|	-	0.13	12.2	0.0	0.66	10.0	0.0	2.0	2	0	0	2	2	2	0	AAA	domain	(dynein-related	subfamily)
AAA_10	PF12846.7	gi|345005676|ref|YP_004808529.1|	-	0.19	10.6	0.3	0.39	9.6	0.1	1.5	2	0	0	2	2	2	0	AAA-like	domain
RNA_helicase	PF00910.22	gi|345005676|ref|YP_004808529.1|	-	0.21	12.0	0.0	0.35	11.3	0.0	1.4	1	0	0	1	1	1	0	RNA	helicase
OCD_Mu_crystall	PF02423.15	gi|345005677|ref|YP_004808530.1|	-	1.1e-06	27.8	0.3	1.2e-06	27.7	0.3	1.0	1	0	0	1	1	1	1	Ornithine	cyclodeaminase/mu-crystallin	family
AdoMet_Synthase	PF01941.19	gi|345005678|ref|YP_004808531.1|	-	7.2e-67	225.9	0.0	1.9e-48	165.2	0.1	2.0	1	1	1	2	2	2	2	S-adenosylmethionine	synthetase	(AdoMet	synthetase)
CMD	PF02627.20	gi|345005679|ref|YP_004808532.1|	-	4e-09	36.4	0.1	1.4e-08	34.6	0.0	2.0	1	1	1	2	2	2	1	Carboxymuconolactone	decarboxylase	family
MS_channel	PF00924.18	gi|345005680|ref|YP_004808533.1|	-	2.6e-42	144.7	0.0	2.6e-42	144.7	0.0	1.6	2	0	0	2	2	2	1	Mechanosensitive	ion	channel
Acetyltransf_3	PF13302.7	gi|345005681|ref|YP_004808534.1|	-	0.033	14.9	0.0	0.075	13.7	0.0	1.6	1	1	0	1	1	1	0	Acetyltransferase	(GNAT)	domain
Acetyltransf_1	PF00583.25	gi|345005681|ref|YP_004808534.1|	-	0.074	13.3	0.0	0.14	12.4	0.0	1.5	1	0	0	1	1	1	0	Acetyltransferase	(GNAT)	family
YdjM	PF04307.14	gi|345005682|ref|YP_004808535.1|	-	1.5e-16	60.2	15.0	7.5e-16	57.9	15.0	1.8	1	1	0	1	1	1	1	LexA-binding,	inner	membrane-associated	putative	hydrolase
zf-CDGSH	PF09360.10	gi|345005683|ref|YP_004808536.1|	-	5.6e-11	42.5	0.2	1.2e-10	41.4	0.1	1.6	2	0	0	2	2	2	1	Iron-binding	zinc	finger	CDGSH	type
TrkA_N	PF02254.18	gi|345005684|ref|YP_004808537.1|	-	3.7e-40	136.8	8.1	1e-20	74.1	0.4	2.9	2	1	0	2	2	2	2	TrkA-N	domain
TrkA_C	PF02080.21	gi|345005684|ref|YP_004808537.1|	-	5.1e-22	77.5	1.9	1.1e-12	47.6	0.2	3.6	4	0	0	4	4	4	2	TrkA-C	domain
Ion_trans_2	PF07885.16	gi|345005684|ref|YP_004808537.1|	-	6.5e-05	22.8	5.1	6.5e-05	22.8	5.1	1.7	2	0	0	2	2	2	1	Ion	channel
2-Hacid_dh_C	PF02826.19	gi|345005684|ref|YP_004808537.1|	-	0.0059	16.0	0.1	0.011	15.1	0.1	1.4	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
OKR_DC_1_N	PF03709.15	gi|345005684|ref|YP_004808537.1|	-	0.0066	16.7	0.5	0.036	14.3	0.1	2.3	2	0	0	2	2	2	1	Orn/Lys/Arg	decarboxylase,	N-terminal	domain
UDPG_MGDP_dh_N	PF03721.14	gi|345005684|ref|YP_004808537.1|	-	0.031	13.9	2.9	1.9	8.1	0.3	2.2	2	0	0	2	2	2	0	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
IRK	PF01007.20	gi|345005684|ref|YP_004808537.1|	-	0.053	13.3	0.1	0.1	12.4	0.1	1.4	1	0	0	1	1	1	0	Inward	rectifier	potassium	channel	transmembrane	domain
Sdh_cyt	PF01127.22	gi|345005684|ref|YP_004808537.1|	-	5.4	7.1	7.0	0.64	10.1	0.2	2.6	3	0	0	3	3	3	0	Succinate	dehydrogenase/Fumarate	reductase	transmembrane	subunit
DUF998	PF06197.13	gi|345005685|ref|YP_004808538.1|	-	4.2e-12	46.0	36.7	5.8e-12	45.6	36.7	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF998)
Promethin	PF16015.5	gi|345005686|ref|YP_004808539.1|	-	0.59	10.1	10.4	0.83	9.6	10.4	1.3	1	0	0	1	1	1	0	Promethin
CENP-F_leu_zip	PF10473.9	gi|345005687|ref|YP_004808540.1|	-	3.7e-06	27.0	16.4	3.7e-06	27.0	16.4	1.7	2	0	0	2	2	1	1	Leucine-rich	repeats	of	kinetochore	protein	Cenp-F/LEK1
DUF3450	PF11932.8	gi|345005687|ref|YP_004808540.1|	-	9.1e-05	21.9	6.8	9.1e-05	21.9	6.8	1.6	2	0	0	2	2	1	1	Protein	of	unknown	function	(DUF3450)
DUF1664	PF07889.12	gi|345005687|ref|YP_004808540.1|	-	0.00029	20.9	3.1	0.00054	20.0	3.1	1.4	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1664)
Spc7	PF08317.11	gi|345005687|ref|YP_004808540.1|	-	0.00071	18.6	10.6	0.0014	17.6	10.6	1.4	1	0	0	1	1	1	1	Spc7	kinetochore	protein
bZIP_2	PF07716.15	gi|345005687|ref|YP_004808540.1|	-	0.0014	18.6	15.7	0.042	13.9	5.9	2.7	1	1	1	2	2	2	2	Basic	region	leucine	zipper
Atg14	PF10186.9	gi|345005687|ref|YP_004808540.1|	-	0.0031	16.7	5.3	0.0052	15.9	5.3	1.2	1	0	0	1	1	1	1	Vacuolar	sorting	38	and	autophagy-related	subunit	14
Tektin	PF03148.14	gi|345005687|ref|YP_004808540.1|	-	0.0046	15.8	7.3	0.011	14.6	7.3	1.5	1	0	0	1	1	1	1	Tektin	family
GAS	PF13851.6	gi|345005687|ref|YP_004808540.1|	-	0.0046	16.3	9.6	0.0095	15.3	9.6	1.4	1	0	0	1	1	1	1	Growth-arrest	specific	micro-tubule	binding
LPP	PF04728.13	gi|345005687|ref|YP_004808540.1|	-	0.0049	17.2	3.2	0.082	13.3	0.7	2.9	1	1	1	2	2	2	1	Lipoprotein	leucine-zipper
THOC7	PF05615.13	gi|345005687|ref|YP_004808540.1|	-	0.006	16.9	7.9	0.015	15.6	7.9	1.7	1	0	0	1	1	1	1	Tho	complex	subunit	7
JIP_LZII	PF16471.5	gi|345005687|ref|YP_004808540.1|	-	0.0067	16.6	8.2	0.0067	16.6	8.2	2.4	1	1	1	2	2	2	1	JNK-interacting	protein	leucine	zipper	II
TMF_TATA_bd	PF12325.8	gi|345005687|ref|YP_004808540.1|	-	0.0077	16.5	11.9	0.0077	16.5	11.9	2.1	2	0	0	2	2	1	1	TATA	element	modulatory	factor	1	TATA	binding
BRE1	PF08647.11	gi|345005687|ref|YP_004808540.1|	-	0.0081	16.2	6.5	0.03	14.4	6.5	1.9	1	0	0	1	1	1	1	BRE1	E3	ubiquitin	ligase
FapA	PF03961.13	gi|345005687|ref|YP_004808540.1|	-	0.01	14.5	2.0	0.015	13.9	2.0	1.2	1	0	0	1	1	1	0	Flagellar	Assembly	Protein	A
Leu_zip	PF15294.6	gi|345005687|ref|YP_004808540.1|	-	0.012	15.1	6.2	0.026	14.1	6.2	1.5	1	0	0	1	1	1	0	Leucine	zipper
Allexi_40kDa	PF05549.11	gi|345005687|ref|YP_004808540.1|	-	0.014	15.0	1.8	0.028	13.9	1.8	1.5	1	0	0	1	1	1	0	Allexivirus	40kDa	protein
CASP_C	PF08172.12	gi|345005687|ref|YP_004808540.1|	-	0.015	14.6	18.9	0.31	10.4	2.9	2.4	1	1	1	2	2	2	0	CASP	C	terminal
ADIP	PF11559.8	gi|345005687|ref|YP_004808540.1|	-	0.021	14.9	13.8	0.019	15.1	9.7	2.2	2	0	0	2	2	2	0	Afadin-	and	alpha	-actinin-Binding
Cep57_CLD_2	PF14197.6	gi|345005687|ref|YP_004808540.1|	-	0.021	14.9	21.8	0.066	13.3	21.0	2.3	1	1	1	2	2	2	0	Centrosome	localisation	domain	of	PPC89
bZIP_1	PF00170.21	gi|345005687|ref|YP_004808540.1|	-	0.022	14.8	10.6	0.18	11.9	3.2	2.5	1	1	1	2	2	2	0	bZIP	transcription	factor
PI3K_P85_iSH2	PF16454.5	gi|345005687|ref|YP_004808540.1|	-	0.024	14.2	3.4	0.042	13.4	3.4	1.5	1	0	0	1	1	1	0	Phosphatidylinositol	3-kinase	regulatory	subunit	P85	inter-SH2	domain
TMPIT	PF07851.13	gi|345005687|ref|YP_004808540.1|	-	0.029	13.6	3.1	0.048	12.9	3.1	1.2	1	0	0	1	1	1	0	TMPIT-like	protein
Phage_GP20	PF06810.11	gi|345005687|ref|YP_004808540.1|	-	0.031	14.1	8.3	0.27	11.0	8.3	2.2	1	1	0	1	1	1	0	Phage	minor	structural	protein	GP20
DUF5082	PF16888.5	gi|345005687|ref|YP_004808540.1|	-	0.04	14.2	4.8	0.12	12.6	3.8	2.1	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF5082)
DUF812	PF05667.11	gi|345005687|ref|YP_004808540.1|	-	0.045	12.6	18.0	0.066	12.1	18.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF812)
Suppressor_APC	PF11414.8	gi|345005687|ref|YP_004808540.1|	-	0.047	13.8	6.6	0.11	12.6	6.6	1.6	1	0	0	1	1	1	0	Adenomatous	polyposis	coli	tumour	suppressor	protein
KxDL	PF10241.9	gi|345005687|ref|YP_004808540.1|	-	0.086	13.1	1.6	0.17	12.2	0.9	1.7	1	1	0	1	1	1	0	Uncharacterized	conserved	protein
NBP1	PF08537.10	gi|345005687|ref|YP_004808540.1|	-	0.097	12.1	1.9	0.15	11.5	1.9	1.2	1	0	0	1	1	1	0	Fungal	Nap	binding	protein	NBP1
Syntaxin-6_N	PF09177.11	gi|345005687|ref|YP_004808540.1|	-	0.13	12.8	5.5	0.46	11.1	5.5	2.0	1	0	0	1	1	1	0	Syntaxin	6,	N-terminal
AAA_13	PF13166.6	gi|345005687|ref|YP_004808540.1|	-	0.15	10.7	6.8	0.26	9.9	6.8	1.3	1	0	0	1	1	1	0	AAA	domain
FlaC_arch	PF05377.11	gi|345005687|ref|YP_004808540.1|	-	0.17	12.3	6.0	0.56	10.6	3.5	2.7	1	1	1	2	2	2	0	Flagella	accessory	protein	C	(FlaC)
DUF4795	PF16043.5	gi|345005687|ref|YP_004808540.1|	-	0.19	11.3	7.5	6.4	6.3	7.5	2.4	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4795)
WXG100	PF06013.12	gi|345005687|ref|YP_004808540.1|	-	0.2	11.9	4.2	0.67	10.2	4.2	1.9	1	0	0	1	1	1	0	Proteins	of	100	residues	with	WXG
BLOC1_2	PF10046.9	gi|345005687|ref|YP_004808540.1|	-	0.29	11.5	5.1	0.7	10.2	5.1	1.7	1	0	0	1	1	1	0	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
DUF4618	PF15397.6	gi|345005687|ref|YP_004808540.1|	-	0.5	9.7	8.3	1.8	7.9	8.3	1.8	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4618)
Seryl_tRNA_N	PF02403.22	gi|345005687|ref|YP_004808540.1|	-	0.59	10.4	15.5	0.027	14.7	9.4	1.9	2	0	0	2	2	1	0	Seryl-tRNA	synthetase	N-terminal	domain
DASH_Spc19	PF08287.11	gi|345005687|ref|YP_004808540.1|	-	0.62	9.9	14.5	0.31	10.9	1.8	3.0	3	0	0	3	3	3	0	Spc19
Jnk-SapK_ap_N	PF09744.9	gi|345005687|ref|YP_004808540.1|	-	0.64	10.2	26.2	0.029	14.6	17.7	2.2	2	0	0	2	2	2	0	JNK_SAPK-associated	protein-1
Macoilin	PF09726.9	gi|345005687|ref|YP_004808540.1|	-	0.72	8.3	7.1	1.1	7.7	7.1	1.2	1	0	0	1	1	1	0	Macoilin	family
XhlA	PF10779.9	gi|345005687|ref|YP_004808540.1|	-	0.74	10.1	8.8	0.6	10.4	5.4	2.4	1	1	1	2	2	2	0	Haemolysin	XhlA
HemX	PF04375.14	gi|345005687|ref|YP_004808540.1|	-	0.82	8.9	16.2	0.016	14.5	6.9	2.0	2	0	0	2	2	2	0	HemX,	putative	uroporphyrinogen-III	C-methyltransferase
TolA_bind_tri	PF16331.5	gi|345005687|ref|YP_004808540.1|	-	0.83	9.8	13.1	1.5	9.0	0.7	3.1	2	1	1	3	3	3	0	TolA	binding	protein	trimerisation
DLP_helical	PF18709.1	gi|345005687|ref|YP_004808540.1|	-	0.99	8.5	5.3	0.49	9.6	1.9	1.6	1	1	0	1	1	1	0	Dynamin-like	helical	domain
CorA	PF01544.18	gi|345005687|ref|YP_004808540.1|	-	1	8.6	4.8	1.8	7.8	4.8	1.3	1	0	0	1	1	1	0	CorA-like	Mg2+	transporter	protein
TMF_DNA_bd	PF12329.8	gi|345005687|ref|YP_004808540.1|	-	1	9.4	15.4	2.9	7.9	10.1	2.6	1	1	1	2	2	2	0	TATA	element	modulatory	factor	1	DNA	binding
Exonuc_VII_L	PF02601.15	gi|345005687|ref|YP_004808540.1|	-	1.7	8.1	8.2	2.6	7.5	8.2	1.2	1	0	0	1	1	1	0	Exonuclease	VII,	large	subunit
MCC-bdg_PDZ	PF10506.9	gi|345005687|ref|YP_004808540.1|	-	1.7	8.7	7.8	11	6.1	7.8	2.1	1	1	0	1	1	1	0	PDZ	domain	of	MCC-2	bdg	protein	for	Usher	syndrome
SlyX	PF04102.12	gi|345005687|ref|YP_004808540.1|	-	1.9	9.1	11.6	5.4	7.7	11.0	2.2	1	1	0	1	1	1	0	SlyX
Prefoldin	PF02996.17	gi|345005687|ref|YP_004808540.1|	-	2.1	8.3	7.8	6.3	6.7	1.2	2.5	1	1	0	2	2	2	0	Prefoldin	subunit
HALZ	PF02183.18	gi|345005687|ref|YP_004808540.1|	-	2.6	8.3	8.7	0.97	9.7	1.7	2.4	1	1	1	2	2	2	0	Homeobox	associated	leucine	zipper
CLZ	PF16526.5	gi|345005687|ref|YP_004808540.1|	-	2.7	8.4	14.9	2.8	8.4	5.6	2.7	1	1	1	2	2	2	0	C-terminal	leucine	zipper	domain	of	cyclic	nucleotide-gated	channels
Prefoldin_2	PF01920.20	gi|345005687|ref|YP_004808540.1|	-	3.3	7.7	13.2	3.5	7.6	3.8	2.6	1	1	1	2	2	2	0	Prefoldin	subunit
YabA	PF06156.13	gi|345005687|ref|YP_004808540.1|	-	3.3	8.4	10.3	18	6.0	7.4	3.0	2	1	1	3	3	3	0	Initiation	control	protein	YabA
IFT20	PF14931.6	gi|345005687|ref|YP_004808540.1|	-	3.5	7.8	12.2	1.3	9.2	7.9	2.2	1	1	1	2	2	2	0	Intraflagellar	transport	complex	B,	subunit	20
UPF0242	PF06785.11	gi|345005687|ref|YP_004808540.1|	-	3.7	7.6	19.6	0.045	13.9	10.6	2.1	2	0	0	2	2	1	0	Uncharacterised	protein	family	(UPF0242)	N-terminus
TPR_MLP1_2	PF07926.12	gi|345005687|ref|YP_004808540.1|	-	3.8	7.6	27.4	0.66	10.0	5.5	3.0	2	1	1	3	3	2	0	TPR/MLP1/MLP2-like	protein
Tho2	PF11262.8	gi|345005687|ref|YP_004808540.1|	-	4.2	6.5	6.4	6.9	5.8	5.8	1.6	1	1	1	2	2	2	0	Transcription	factor/nuclear	export	subunit	protein	2
Fmp27_WPPW	PF10359.9	gi|345005687|ref|YP_004808540.1|	-	5.8	5.6	12.5	0.062	12.1	5.0	1.4	2	0	0	2	2	1	0	RNA	pol	II	promoter	Fmp27	protein	domain
Not3	PF04065.15	gi|345005687|ref|YP_004808540.1|	-	6.4	6.1	10.2	0.28	10.6	4.5	1.5	2	0	0	2	2	1	0	Not1	N-terminal	domain,	CCR4-Not	complex	component
HAUS-augmin3	PF14932.6	gi|345005687|ref|YP_004808540.1|	-	7	6.2	18.5	0.17	11.4	11.2	1.8	2	0	0	2	2	2	0	HAUS	augmin-like	complex	subunit	3
Tropomyosin_1	PF12718.7	gi|345005687|ref|YP_004808540.1|	-	7	6.8	26.8	0.26	11.4	17.9	2.7	2	1	0	2	2	2	0	Tropomyosin	like
UPF0449	PF15136.6	gi|345005687|ref|YP_004808540.1|	-	8.1	7.0	11.8	12	6.5	8.3	2.7	1	1	1	2	2	2	0	Uncharacterised	protein	family	UPF0449
YscO	PF07321.12	gi|345005687|ref|YP_004808540.1|	-	9	6.2	33.9	0.11	12.5	22.5	2.4	2	0	0	2	2	2	0	Type	III	secretion	protein	YscO
HTH_24	PF13412.6	gi|345005688|ref|YP_004808541.1|	-	0.011	15.3	0.4	0.016	14.8	0.0	1.5	2	0	0	2	2	2	0	Winged	helix-turn-helix	DNA-binding
HTH_12	PF08461.10	gi|345005688|ref|YP_004808541.1|	-	0.015	15.3	0.0	0.025	14.5	0.0	1.6	1	1	0	1	1	1	0	Ribonuclease	R	winged-helix	domain
HTH_5	PF01022.20	gi|345005688|ref|YP_004808541.1|	-	0.037	13.9	0.2	0.093	12.6	0.2	1.6	1	1	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
TrmB	PF01978.19	gi|345005688|ref|YP_004808541.1|	-	0.089	12.7	0.0	0.11	12.4	0.0	1.2	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
Phage_rep_org_N	PF09681.10	gi|345005688|ref|YP_004808541.1|	-	0.12	12.3	0.0	0.24	11.3	0.0	1.4	1	1	0	1	1	1	0	N-terminal	phage	replisome	organiser	(Phage_rep_org_N)
Adenylsucc_synt	PF00709.21	gi|345005689|ref|YP_004808542.1|	-	6.6e-154	512.8	0.1	7.6e-154	512.7	0.1	1.0	1	0	0	1	1	1	1	Adenylosuccinate	synthetase
Trm112p	PF03966.16	gi|345005690|ref|YP_004808543.1|	-	1.3e-09	38.5	1.1	3e-09	37.3	1.1	1.6	1	1	0	1	1	1	1	Trm112p-like	protein
Elf1	PF05129.13	gi|345005690|ref|YP_004808543.1|	-	0.053	13.6	0.0	0.053	13.6	0.0	1.1	1	0	0	1	1	1	0	Transcription	elongation	factor	Elf1	like
BsuPI	PF12690.7	gi|345005691|ref|YP_004808544.1|	-	1.8e-27	95.3	0.0	2e-27	95.1	0.0	1.0	1	0	0	1	1	1	1	Intracellular	proteinase	inhibitor
YaeQ	PF07152.12	gi|345005691|ref|YP_004808544.1|	-	0.15	11.7	0.0	0.17	11.5	0.0	1.1	1	0	0	1	1	1	0	YaeQ	protein
DUF4354	PF14263.6	gi|345005691|ref|YP_004808544.1|	-	0.15	11.9	0.0	3.4	7.5	0.0	2.1	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4354)
Epimerase	PF01370.21	gi|345005692|ref|YP_004808545.1|	-	1.2e-47	162.4	0.0	1.4e-47	162.2	0.0	1.1	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
GDP_Man_Dehyd	PF16363.5	gi|345005692|ref|YP_004808545.1|	-	6.3e-35	121.1	0.0	7.8e-35	120.8	0.0	1.1	1	0	0	1	1	1	1	GDP-mannose	4,6	dehydratase
RmlD_sub_bind	PF04321.17	gi|345005692|ref|YP_004808545.1|	-	1.7e-19	70.0	0.0	2.2e-19	69.7	0.0	1.1	1	0	0	1	1	1	1	RmlD	substrate	binding	domain
3Beta_HSD	PF01073.19	gi|345005692|ref|YP_004808545.1|	-	9.9e-12	44.4	0.0	1.2e-11	44.2	0.0	1.2	1	0	0	1	1	1	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
Polysacc_synt_2	PF02719.15	gi|345005692|ref|YP_004808545.1|	-	2.7e-11	43.1	0.4	5.8e-10	38.8	0.4	2.6	1	1	0	1	1	1	1	Polysaccharide	biosynthesis	protein
NAD_binding_10	PF13460.6	gi|345005692|ref|YP_004808545.1|	-	1.4e-09	38.1	0.0	2.3e-09	37.4	0.0	1.3	1	0	0	1	1	1	1	NAD(P)H-binding
NAD_binding_4	PF07993.12	gi|345005692|ref|YP_004808545.1|	-	1.7e-06	27.4	0.1	0.00076	18.7	0.1	2.8	1	1	0	1	1	1	1	Male	sterility	protein
TrkA_N	PF02254.18	gi|345005692|ref|YP_004808545.1|	-	0.01	16.1	0.4	0.02	15.1	0.4	1.5	1	0	0	1	1	1	0	TrkA-N	domain
DapB_N	PF01113.20	gi|345005692|ref|YP_004808545.1|	-	0.072	13.2	0.3	0.13	12.4	0.3	1.4	1	0	0	1	1	1	0	Dihydrodipicolinate	reductase,	N-terminus
DUF762	PF05555.11	gi|345005692|ref|YP_004808545.1|	-	0.19	11.3	0.1	0.31	10.6	0.1	1.2	1	0	0	1	1	1	0	Coxiella	burnetii	protein	of	unknown	function	(DUF762)
Trm56	PF01994.16	gi|345005693|ref|YP_004808546.1|	-	3.6e-47	159.2	0.0	4.5e-47	158.9	0.0	1.1	1	0	0	1	1	1	1	tRNA	ribose	2'-O-methyltransferase,	aTrm56
Glyco_hydro_65C	PF03633.15	gi|345005693|ref|YP_004808546.1|	-	0.069	13.1	0.2	1.4	8.9	0.0	2.3	2	0	0	2	2	2	0	Glycosyl	hydrolase	family	65,	C-terminal	domain
TFIIE_alpha	PF02002.17	gi|345005694|ref|YP_004808547.1|	-	4.6e-19	68.2	0.1	9e-19	67.3	0.0	1.5	2	0	0	2	2	2	1	TFIIE	alpha	subunit
HypA	PF01155.19	gi|345005694|ref|YP_004808547.1|	-	0.00085	19.3	0.2	0.0012	18.8	0.2	1.3	1	0	0	1	1	1	1	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
zinc-ribbons_6	PF07191.12	gi|345005694|ref|YP_004808547.1|	-	0.042	13.8	0.6	0.07	13.1	0.6	1.3	1	0	0	1	1	1	0	zinc-ribbons
DNA_ligase_ZBD	PF03119.16	gi|345005694|ref|YP_004808547.1|	-	0.056	13.5	0.1	0.11	12.5	0.1	1.6	1	0	0	1	1	1	0	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
Phage_rep_org_N	PF09681.10	gi|345005694|ref|YP_004808547.1|	-	0.076	13.0	0.0	1.8	8.5	0.0	2.1	2	0	0	2	2	2	0	N-terminal	phage	replisome	organiser	(Phage_rep_org_N)
SF3A2	PF16835.5	gi|345005694|ref|YP_004808547.1|	-	0.18	12.2	0.0	0.31	11.4	0.0	1.3	1	0	0	1	1	1	0	Pre-mRNA-splicing	factor	SF3a	complex	subunit	2	(Prp11)
Zn-ribbon_8	PF09723.10	gi|345005694|ref|YP_004808547.1|	-	0.21	11.7	4.2	0.58	10.3	4.2	1.7	1	1	1	2	2	2	0	Zinc	ribbon	domain
zf_UBZ	PF18439.1	gi|345005694|ref|YP_004808547.1|	-	0.36	10.4	1.9	5.4	6.7	0.1	2.4	2	0	0	2	2	2	0	Ubiquitin-Binding	Zinc	Finger
zf-Mss51	PF13824.6	gi|345005694|ref|YP_004808547.1|	-	0.55	10.4	2.7	2.6	8.2	1.3	2.6	1	1	1	2	2	2	0	Zinc-finger	of	mitochondrial	splicing	suppressor	51
TF_Zn_Ribbon	PF08271.12	gi|345005694|ref|YP_004808547.1|	-	1.9	8.0	7.7	1.2	8.7	0.4	2.9	2	1	1	3	3	3	0	TFIIB	zinc-binding
DUF2110	PF09883.9	gi|345005695|ref|YP_004808548.1|	-	1.5e-91	306.0	0.0	1.6e-91	305.8	0.0	1.0	1	0	0	1	1	1	1	Uncharacterized	protein	conserved	in	archaea	(DUF2110)
LapA_dom	PF06305.11	gi|345005696|ref|YP_004808549.1|	-	0.072	12.9	0.3	0.072	12.9	0.3	1.6	2	0	0	2	2	2	0	Lipopolysaccharide	assembly	protein	A	domain
COX14	PF14880.6	gi|345005696|ref|YP_004808549.1|	-	0.56	10.1	0.0	0.56	10.1	0.0	2.0	2	0	0	2	2	2	0	Cytochrome	oxidase	c	assembly
His_biosynth	PF00977.21	gi|345005700|ref|YP_004808553.1|	-	3.3e-81	272.1	0.2	3.8e-81	271.9	0.2	1.0	1	0	0	1	1	1	1	Histidine	biosynthesis	protein
Dus	PF01207.17	gi|345005700|ref|YP_004808553.1|	-	2e-09	37.0	0.0	6.3e-06	25.5	0.0	2.1	2	0	0	2	2	2	2	Dihydrouridine	synthase	(Dus)
ThiG	PF05690.14	gi|345005700|ref|YP_004808553.1|	-	3.4e-08	33.1	1.2	2.2e-05	23.9	0.2	2.1	2	0	0	2	2	2	2	Thiazole	biosynthesis	protein	ThiG
NMO	PF03060.15	gi|345005700|ref|YP_004808553.1|	-	9.2e-06	25.3	1.9	0.0046	16.4	0.1	2.1	2	0	0	2	2	2	2	Nitronate	monooxygenase
G3P_antiterm	PF04309.12	gi|345005700|ref|YP_004808553.1|	-	0.0011	18.4	0.1	0.0022	17.4	0.1	1.5	2	0	0	2	2	2	1	Glycerol-3-phosphate	responsive	antiterminator
DHO_dh	PF01180.21	gi|345005700|ref|YP_004808553.1|	-	0.0015	17.8	0.5	0.023	13.9	0.0	2.1	2	0	0	2	2	2	1	Dihydroorotate	dehydrogenase
TMP-TENI	PF02581.17	gi|345005700|ref|YP_004808553.1|	-	0.0045	16.3	0.3	0.087	12.1	0.0	2.1	2	0	0	2	2	2	1	Thiamine	monophosphate	synthase
IMPDH	PF00478.25	gi|345005700|ref|YP_004808553.1|	-	0.012	14.6	0.7	0.021	13.9	0.1	1.6	2	0	0	2	2	2	0	IMP	dehydrogenase	/	GMP	reductase	domain
RNA_pol_L_2	PF13656.6	gi|345005701|ref|YP_004808554.1|	-	2e-15	56.3	0.0	2.3e-15	56.1	0.0	1.1	1	0	0	1	1	1	1	RNA	polymerase	Rpb3/Rpb11	dimerisation	domain
RNA_pol_L	PF01193.24	gi|345005701|ref|YP_004808554.1|	-	3.3e-07	29.6	0.0	5.2e-07	29.0	0.0	1.3	1	1	0	1	1	1	1	RNA	polymerase	Rpb3/Rpb11	dimerisation	domain
GHMP_kinases_N	PF00288.26	gi|345005702|ref|YP_004808555.1|	-	3.4e-10	40.0	0.0	6.5e-10	39.1	0.0	1.5	1	0	0	1	1	1	1	GHMP	kinases	N	terminal	domain
HHV6-IE	PF03753.13	gi|345005702|ref|YP_004808555.1|	-	0.17	9.3	0.0	0.23	8.9	0.0	1.0	1	0	0	1	1	1	0	Human	herpesvirus	6	immediate	early	protein
GHMP_kinases_N	PF00288.26	gi|345005703|ref|YP_004808556.1|	-	1.3e-10	41.4	1.8	1.3e-10	41.4	1.8	2.2	3	0	0	3	3	3	1	GHMP	kinases	N	terminal	domain
GHMP_kinases_C	PF08544.13	gi|345005703|ref|YP_004808556.1|	-	0.033	14.5	1.9	0.092	13.1	0.1	2.6	2	1	1	3	3	3	0	GHMP	kinases	C	terminal
CM_2	PF01817.21	gi|345005704|ref|YP_004808557.1|	-	8.5e-16	58.1	2.4	9.7e-16	57.9	2.4	1.1	1	0	0	1	1	1	1	Chorismate	mutase	type	II
DUF4256	PF14066.6	gi|345005705|ref|YP_004808558.1|	-	0.0027	17.4	0.7	0.0028	17.4	0.7	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF4256)
EnY2	PF10163.9	gi|345005705|ref|YP_004808558.1|	-	0.0074	16.6	1.3	0.011	16.1	1.3	1.2	1	0	0	1	1	1	1	Transcription	factor	e(y)2
PIN_2	PF10130.9	gi|345005706|ref|YP_004808559.1|	-	6.8e-36	123.4	1.0	7.9e-36	123.2	1.0	1.1	1	0	0	1	1	1	1	PIN	domain
PIN_3	PF13470.6	gi|345005706|ref|YP_004808559.1|	-	2.6e-06	28.2	0.3	3.8e-06	27.6	0.3	1.2	1	0	0	1	1	1	1	PIN	domain
PIN	PF01850.21	gi|345005706|ref|YP_004808559.1|	-	0.00014	22.4	1.7	0.00023	21.6	1.7	1.4	1	1	0	1	1	1	1	PIN	domain
PIN	PF01850.21	gi|345005708|ref|YP_004808561.1|	-	5.9e-07	30.0	0.7	7.1e-07	29.8	0.7	1.1	1	0	0	1	1	1	1	PIN	domain
MraZ	PF02381.18	gi|345005709|ref|YP_004808562.1|	-	0.014	15.4	0.0	0.023	14.7	0.0	1.4	1	0	0	1	1	1	0	MraZ	protein,	putative	antitoxin-like
DUF4256	PF14066.6	gi|345005710|ref|YP_004808563.1|	-	0.0056	16.4	0.2	0.0058	16.3	0.2	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF4256)
Clat_adaptor_s	PF01217.20	gi|345005710|ref|YP_004808563.1|	-	0.014	15.3	0.1	0.016	15.2	0.1	1.1	1	0	0	1	1	1	0	Clathrin	adaptor	complex	small	chain
EnY2	PF10163.9	gi|345005710|ref|YP_004808563.1|	-	0.018	15.4	0.5	0.022	15.1	0.5	1.2	1	0	0	1	1	1	0	Transcription	factor	e(y)2
NdhM	PF10664.9	gi|345005710|ref|YP_004808563.1|	-	0.068	13.4	0.2	0.086	13.1	0.2	1.1	1	0	0	1	1	1	0	Cyanobacterial	and	plastid	NDH-1	subunit	M
CARD	PF00619.21	gi|345005710|ref|YP_004808563.1|	-	0.081	13.0	0.1	0.11	12.5	0.1	1.2	1	0	0	1	1	1	0	Caspase	recruitment	domain
PemK_toxin	PF02452.17	gi|345005711|ref|YP_004808564.1|	-	2.1e-27	95.7	0.1	2.3e-27	95.6	0.1	1.0	1	0	0	1	1	1	1	PemK-like,	MazF-like	toxin	of	type	II	toxin-antitoxin	system
EnY2	PF10163.9	gi|345005713|ref|YP_004808566.1|	-	0.079	13.3	0.1	0.16	12.4	0.1	1.6	1	1	0	1	1	1	0	Transcription	factor	e(y)2
PSK_trans_fac	PF07704.11	gi|345005713|ref|YP_004808566.1|	-	0.36	11.6	3.4	0.74	10.6	1.2	2.2	1	1	1	2	2	2	0	Rv0623-like	transcription	factor
PIN_9	PF18477.1	gi|345005714|ref|YP_004808567.1|	-	0.003	17.8	0.5	0.0064	16.8	0.2	1.7	1	1	1	2	2	2	1	PIN	like	domain
PIN	PF01850.21	gi|345005714|ref|YP_004808567.1|	-	0.0043	17.6	0.1	0.0082	16.6	0.0	1.6	1	1	1	2	2	2	1	PIN	domain
UDPG_MGDP_dh_N	PF03721.14	gi|345005716|ref|YP_004808569.1|	-	3e-40	137.8	0.0	6.9e-40	136.6	0.0	1.6	1	0	0	1	1	1	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
UDPG_MGDP_dh	PF00984.19	gi|345005716|ref|YP_004808569.1|	-	1.1e-22	80.0	0.0	2.1e-22	79.1	0.0	1.5	1	0	0	1	1	1	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	central	domain
UDPG_MGDP_dh_C	PF03720.15	gi|345005716|ref|YP_004808569.1|	-	1.7e-22	79.8	0.0	5.1e-22	78.3	0.0	1.8	2	0	0	2	2	2	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	UDP	binding	domain
NAD_binding_2	PF03446.15	gi|345005716|ref|YP_004808569.1|	-	7.1e-06	26.3	0.0	2e-05	24.8	0.0	1.8	1	0	0	1	1	1	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
2-Hacid_dh_C	PF02826.19	gi|345005716|ref|YP_004808569.1|	-	0.018	14.4	0.0	1.3	8.3	0.0	2.3	2	0	0	2	2	2	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
ApbA	PF02558.16	gi|345005716|ref|YP_004808569.1|	-	0.03	14.0	0.0	0.068	12.8	0.0	1.6	1	0	0	1	1	1	0	Ketopantoate	reductase	PanE/ApbA
AlaDh_PNT_C	PF01262.21	gi|345005716|ref|YP_004808569.1|	-	0.034	13.4	0.0	0.11	11.7	0.0	1.8	2	0	0	2	2	2	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
3HCDH_N	PF02737.18	gi|345005716|ref|YP_004808569.1|	-	0.14	12.1	0.0	0.26	11.1	0.0	1.6	1	1	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
Epimerase_2	PF02350.19	gi|345005717|ref|YP_004808570.1|	-	6.1e-110	367.3	0.3	7e-110	367.1	0.3	1.0	1	0	0	1	1	1	1	UDP-N-acetylglucosamine	2-epimerase
Glyco_trans_4_4	PF13579.6	gi|345005717|ref|YP_004808570.1|	-	0.00058	20.3	0.0	0.0016	18.9	0.0	1.8	1	1	0	1	1	1	1	Glycosyl	transferase	4-like	domain
DUF4226	PF10774.9	gi|345005717|ref|YP_004808570.1|	-	0.034	14.4	0.6	0.076	13.3	0.6	1.5	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4226)
NeuB	PF03102.14	gi|345005718|ref|YP_004808571.1|	-	1.4e-77	260.4	0.0	1.9e-77	260.0	0.0	1.2	1	0	0	1	1	1	1	NeuB	family
AP_endonuc_2	PF01261.24	gi|345005718|ref|YP_004808571.1|	-	1.1e-17	64.2	0.6	3e-15	56.2	0.2	2.9	3	1	0	3	3	3	2	Xylose	isomerase-like	TIM	barrel
SAF	PF08666.12	gi|345005718|ref|YP_004808571.1|	-	4.4e-09	36.8	0.1	1.1e-08	35.6	0.1	1.7	1	0	0	1	1	1	1	SAF	domain
ChapFlgA	PF13144.6	gi|345005718|ref|YP_004808571.1|	-	0.019	15.0	0.0	0.035	14.2	0.0	1.4	1	0	0	1	1	1	0	Chaperone	for	flagella	basal	body	P-ring	formation
ParBc	PF02195.18	gi|345005719|ref|YP_004808572.1|	-	0.13	12.5	0.0	0.29	11.5	0.0	1.6	1	0	0	1	1	1	0	ParB-like	nuclease	domain
Sulfatase	PF00884.23	gi|345005720|ref|YP_004808573.1|	-	0.015	14.7	0.1	0.02	14.3	0.1	1.2	1	0	0	1	1	1	0	Sulfatase
Glycos_transf_2	PF00535.26	gi|345005721|ref|YP_004808574.1|	-	0.00032	20.6	0.2	0.00046	20.0	0.2	1.3	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
GNT-I	PF03071.15	gi|345005721|ref|YP_004808574.1|	-	0.25	10.1	3.4	0.35	9.6	3.4	1.1	1	0	0	1	1	1	0	GNT-I	family
Glycos_transf_2	PF00535.26	gi|345005722|ref|YP_004808575.1|	-	7.2e-07	29.2	0.1	1.3e-06	28.3	0.1	1.4	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
GNT-I	PF03071.15	gi|345005722|ref|YP_004808575.1|	-	0.053	12.3	2.5	0.32	9.7	3.1	1.7	2	0	0	2	2	2	0	GNT-I	family
PS_pyruv_trans	PF04230.13	gi|345005723|ref|YP_004808576.1|	-	3.7e-15	56.6	0.0	5.2e-15	56.1	0.0	1.1	1	0	0	1	1	1	1	Polysaccharide	pyruvyl	transferase
DUF484	PF04340.12	gi|345005723|ref|YP_004808576.1|	-	0.02	14.6	0.1	0.032	13.9	0.1	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function,	DUF484
CTP_transf_3	PF02348.19	gi|345005724|ref|YP_004808577.1|	-	2.1e-21	76.8	0.0	2.9e-21	76.4	0.0	1.2	1	0	0	1	1	1	1	Cytidylyltransferase
NTP_transf_3	PF12804.7	gi|345005724|ref|YP_004808577.1|	-	7.9e-06	26.3	0.1	9.9e-06	26.0	0.1	1.2	1	0	0	1	1	1	1	MobA-like	NTP	transferase	domain
IspD	PF01128.19	gi|345005724|ref|YP_004808577.1|	-	0.0089	15.8	0.0	0.035	13.8	0.0	1.8	2	0	0	2	2	2	1	2-C-methyl-D-erythritol	4-phosphate	cytidylyltransferase
Glyco_trans_1_4	PF13692.6	gi|345005726|ref|YP_004808579.1|	-	3.3e-25	89.1	0.1	7e-25	88.0	0.1	1.5	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glycos_transf_1	PF00534.20	gi|345005726|ref|YP_004808579.1|	-	3.2e-21	75.6	0.0	4.7e-21	75.1	0.0	1.2	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_transf_4	PF13439.6	gi|345005726|ref|YP_004808579.1|	-	7.8e-14	52.0	1.4	7.8e-14	52.0	1.4	1.7	2	0	0	2	2	2	1	Glycosyltransferase	Family	4
Glyco_trans_4_4	PF13579.6	gi|345005726|ref|YP_004808579.1|	-	1.4e-09	38.6	6.6	1.4e-09	38.6	6.6	2.6	2	1	0	2	2	2	1	Glycosyl	transferase	4-like	domain
Glyco_trans_1_2	PF13524.6	gi|345005726|ref|YP_004808579.1|	-	6.9e-09	36.0	0.1	1.9e-08	34.6	0.1	1.8	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
DUF2325	PF10087.9	gi|345005726|ref|YP_004808579.1|	-	0.015	15.4	0.0	0.037	14.2	0.0	1.7	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2325)
Methyltransf_21	PF05050.12	gi|345005727|ref|YP_004808580.1|	-	3.1e-11	43.6	0.0	4.8e-11	43.0	0.0	1.4	1	1	0	1	1	1	1	Methyltransferase	FkbM	domain
ABC_tran	PF00005.27	gi|345005728|ref|YP_004808581.1|	-	1e-32	113.5	0.0	1.7e-32	112.8	0.0	1.4	1	0	0	1	1	1	1	ABC	transporter
ABC_membrane	PF00664.23	gi|345005728|ref|YP_004808581.1|	-	3e-09	37.0	9.2	4.4e-09	36.4	9.2	1.2	1	0	0	1	1	1	1	ABC	transporter	transmembrane	region
SMC_N	PF02463.19	gi|345005728|ref|YP_004808581.1|	-	3.6e-07	29.9	0.1	4.2e-05	23.1	0.0	2.3	1	1	1	2	2	2	1	RecF/RecN/SMC	N	terminal	domain
AAA_21	PF13304.6	gi|345005728|ref|YP_004808581.1|	-	0.005	16.7	0.1	0.37	10.5	0.0	2.3	2	0	0	2	2	2	1	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_16	PF13191.6	gi|345005728|ref|YP_004808581.1|	-	0.0063	16.9	0.2	0.019	15.3	0.2	1.8	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_22	PF13401.6	gi|345005728|ref|YP_004808581.1|	-	0.0092	16.3	0.0	0.037	14.3	0.0	1.9	1	1	0	1	1	1	1	AAA	domain
AAA_29	PF13555.6	gi|345005728|ref|YP_004808581.1|	-	0.014	15.1	0.0	0.028	14.1	0.0	1.4	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
AAA_33	PF13671.6	gi|345005728|ref|YP_004808581.1|	-	0.029	14.5	0.0	0.071	13.3	0.0	1.7	1	0	0	1	1	1	0	AAA	domain
RsgA_GTPase	PF03193.16	gi|345005728|ref|YP_004808581.1|	-	0.035	14.0	0.0	0.061	13.2	0.0	1.4	1	0	0	1	1	1	0	RsgA	GTPase
AAA_5	PF07728.14	gi|345005728|ref|YP_004808581.1|	-	0.037	14.0	0.0	0.12	12.4	0.0	1.8	1	0	0	1	1	1	0	AAA	domain	(dynein-related	subfamily)
AAA_25	PF13481.6	gi|345005728|ref|YP_004808581.1|	-	0.039	13.5	0.0	0.1	12.2	0.0	1.7	1	0	0	1	1	1	0	AAA	domain
IstB_IS21	PF01695.17	gi|345005728|ref|YP_004808581.1|	-	0.059	13.1	0.0	0.72	9.6	0.0	2.2	2	0	0	2	2	2	0	IstB-like	ATP	binding	protein
AAA_18	PF13238.6	gi|345005728|ref|YP_004808581.1|	-	0.067	13.7	0.0	0.14	12.7	0.0	1.6	1	0	0	1	1	1	0	AAA	domain
Cytidylate_kin	PF02224.18	gi|345005728|ref|YP_004808581.1|	-	0.086	12.6	0.1	0.15	11.7	0.1	1.4	1	0	0	1	1	1	0	Cytidylate	kinase
AAA_30	PF13604.6	gi|345005728|ref|YP_004808581.1|	-	0.11	12.2	0.1	0.34	10.6	0.0	1.8	2	0	0	2	2	2	0	AAA	domain
Mg_chelatase	PF01078.21	gi|345005728|ref|YP_004808581.1|	-	0.15	11.4	0.0	0.26	10.7	0.0	1.3	1	0	0	1	1	1	0	Magnesium	chelatase,	subunit	ChlI
DZR	PF12773.7	gi|345005729|ref|YP_004808582.1|	-	0.0031	17.5	9.5	0.38	10.8	5.1	2.9	1	1	1	2	2	2	2	Double	zinc	ribbon
zf-C3HC4_3	PF13920.6	gi|345005729|ref|YP_004808582.1|	-	0.0098	15.7	7.0	0.2	11.5	0.3	3.0	3	0	0	3	3	3	2	Zinc	finger,	C3HC4	type	(RING	finger)
zf_Rg	PF17915.1	gi|345005729|ref|YP_004808582.1|	-	0.074	12.5	4.6	12	5.3	0.1	3.1	1	1	2	3	3	3	0	Reverse	gyrase	zinc	finger
zf-CHY	PF05495.12	gi|345005729|ref|YP_004808582.1|	-	0.12	12.9	5.6	0.53	10.8	5.6	1.8	1	1	0	1	1	1	0	CHY	zinc	finger
Lar_restr_allev	PF14354.6	gi|345005729|ref|YP_004808582.1|	-	0.12	12.7	5.0	1.5	9.3	1.1	2.2	1	1	1	2	2	2	0	Restriction	alleviation	protein	Lar
Zn-ribbon_8	PF09723.10	gi|345005729|ref|YP_004808582.1|	-	0.26	11.4	9.2	1.5e+02	2.6	9.2	3.1	1	1	0	1	1	1	0	Zinc	ribbon	domain
zf-C4_Topoisom	PF01396.19	gi|345005729|ref|YP_004808582.1|	-	0.29	10.9	4.4	0.41	10.5	0.0	2.5	3	0	0	3	3	3	0	Topoisomerase	DNA	binding	C4	zinc	finger
DUF1272	PF06906.11	gi|345005729|ref|YP_004808582.1|	-	0.34	11.0	8.4	1.3	9.2	1.4	2.8	2	1	1	3	3	3	0	Protein	of	unknown	function	(DUF1272)
TF_Zn_Ribbon	PF08271.12	gi|345005729|ref|YP_004808582.1|	-	0.43	10.1	9.2	6.6	6.3	1.7	3.6	1	1	1	2	2	2	0	TFIIB	zinc-binding
zf-ACC	PF17848.1	gi|345005729|ref|YP_004808582.1|	-	1.3	9.2	8.8	22	5.2	0.1	4.1	4	1	0	4	4	4	0	Acetyl-coA	carboxylase	zinc	finger	domain
Abhydrolase_1	PF00561.20	gi|345005730|ref|YP_004808583.1|	-	8.7e-19	68.2	0.0	1.2e-18	67.7	0.0	1.2	1	0	0	1	1	1	1	alpha/beta	hydrolase	fold
Abhydrolase_6	PF12697.7	gi|345005730|ref|YP_004808583.1|	-	3.7e-16	60.4	0.1	4.3e-16	60.2	0.1	1.2	1	0	0	1	1	1	1	Alpha/beta	hydrolase	family
Hydrolase_4	PF12146.8	gi|345005730|ref|YP_004808583.1|	-	8.5e-16	57.9	0.0	1.2e-15	57.5	0.0	1.1	1	0	0	1	1	1	1	Serine	aminopeptidase,	S33
Ndr	PF03096.14	gi|345005730|ref|YP_004808583.1|	-	0.0021	16.8	0.0	0.0028	16.4	0.0	1.1	1	0	0	1	1	1	1	Ndr	family
PGAP1	PF07819.13	gi|345005730|ref|YP_004808583.1|	-	0.0024	17.6	0.3	0.069	12.9	0.0	2.5	2	1	1	3	3	3	1	PGAP1-like	protein
Abhydrolase_2	PF02230.16	gi|345005730|ref|YP_004808583.1|	-	0.045	13.6	0.0	0.076	12.8	0.0	1.3	1	0	0	1	1	1	0	Phospholipase/Carboxylesterase
Abhydrolase_5	PF12695.7	gi|345005730|ref|YP_004808583.1|	-	0.055	13.2	0.0	0.15	11.8	0.0	1.6	2	0	0	2	2	2	0	Alpha/beta	hydrolase	family
FAD_binding_3	PF01494.19	gi|345005731|ref|YP_004808584.1|	-	1e-33	117.1	0.1	3.9e-24	85.5	0.0	2.1	2	0	0	2	2	2	2	FAD	binding	domain
FAD_binding_2	PF00890.24	gi|345005731|ref|YP_004808584.1|	-	4.1e-05	22.9	0.6	0.11	11.6	0.0	2.1	2	0	0	2	2	2	2	FAD	binding	domain
NAD_binding_8	PF13450.6	gi|345005731|ref|YP_004808584.1|	-	0.00042	20.5	0.5	0.0012	19.0	0.5	1.8	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
Pyr_redox_2	PF07992.14	gi|345005731|ref|YP_004808584.1|	-	0.00058	19.2	0.2	0.0039	16.5	0.2	2.0	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
Thi4	PF01946.17	gi|345005731|ref|YP_004808584.1|	-	0.0087	15.3	0.0	0.015	14.5	0.0	1.4	1	0	0	1	1	1	1	Thi4	family
DAO	PF01266.24	gi|345005731|ref|YP_004808584.1|	-	0.04	13.5	3.4	0.47	10.0	3.4	2.4	1	1	0	1	1	1	0	FAD	dependent	oxidoreductase
Pyr_redox	PF00070.27	gi|345005731|ref|YP_004808584.1|	-	0.098	13.2	0.1	3.1	8.4	0.2	2.4	2	0	0	2	2	2	0	Pyridine	nucleotide-disulphide	oxidoreductase
Lycopene_cycl	PF05834.12	gi|345005731|ref|YP_004808584.1|	-	0.11	11.5	0.1	0.17	10.9	0.1	1.4	1	1	0	1	1	1	0	Lycopene	cyclase	protein
GIDA	PF01134.22	gi|345005731|ref|YP_004808584.1|	-	0.14	11.2	0.0	0.21	10.7	0.0	1.2	1	0	0	1	1	1	0	Glucose	inhibited	division	protein	A
SE	PF08491.10	gi|345005731|ref|YP_004808584.1|	-	0.25	10.3	0.0	0.69	8.9	0.0	1.6	2	0	0	2	2	2	0	Squalene	epoxidase
HI0933_like	PF03486.14	gi|345005731|ref|YP_004808584.1|	-	0.27	9.9	0.1	0.35	9.5	0.1	1.1	1	0	0	1	1	1	0	HI0933-like	protein
FAD_oxidored	PF12831.7	gi|345005731|ref|YP_004808584.1|	-	0.43	9.9	1.8	1	8.6	1.3	1.6	2	0	0	2	2	2	0	FAD	dependent	oxidoreductase
AMP-binding	PF00501.28	gi|345005732|ref|YP_004808585.1|	-	6e-108	361.2	0.0	7e-108	360.9	0.0	1.0	1	0	0	1	1	1	1	AMP-binding	enzyme
AMP-binding_C	PF13193.6	gi|345005732|ref|YP_004808585.1|	-	7.2e-21	75.0	2.1	1e-20	74.5	0.4	2.2	2	0	0	2	2	2	1	AMP-binding	enzyme	C-terminal	domain
Pro_CA	PF00484.19	gi|345005733|ref|YP_004808586.1|	-	4.5e-28	98.5	0.0	6.1e-28	98.1	0.0	1.1	1	0	0	1	1	1	1	Carbonic	anhydrase
2_5_RNA_ligase2	PF13563.6	gi|345005733|ref|YP_004808586.1|	-	0.085	12.8	0.1	0.18	11.7	0.1	1.5	1	0	0	1	1	1	0	2'-5'	RNA	ligase	superfamily
DAD	PF02109.16	gi|345005734|ref|YP_004808587.1|	-	0.5	10.7	1.7	3.4	8.0	0.1	2.4	2	1	1	3	3	3	0	DAD	family
MTS	PF05175.14	gi|345005735|ref|YP_004808588.1|	-	1.3e-09	37.8	0.0	2.2e-09	37.1	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	small	domain
PrmA	PF06325.13	gi|345005735|ref|YP_004808588.1|	-	1.4e-08	34.5	0.3	2.3e-08	33.8	0.3	1.2	1	0	0	1	1	1	1	Ribosomal	protein	L11	methyltransferase	(PrmA)
Methyltransf_31	PF13847.6	gi|345005735|ref|YP_004808588.1|	-	1e-06	28.6	0.1	1.6e-06	28.0	0.1	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.6	gi|345005735|ref|YP_004808588.1|	-	5.9e-06	26.9	0.0	1.1e-05	26.0	0.0	1.6	1	0	0	1	1	1	1	Methyltransferase	domain
Cons_hypoth95	PF03602.15	gi|345005735|ref|YP_004808588.1|	-	1.4e-05	24.8	0.0	2e-05	24.3	0.0	1.2	1	0	0	1	1	1	1	Conserved	hypothetical	protein	95
Methyltransf_11	PF08241.12	gi|345005735|ref|YP_004808588.1|	-	4.5e-05	24.0	0.0	9.4e-05	23.0	0.0	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
UPF0020	PF01170.18	gi|345005735|ref|YP_004808588.1|	-	0.0005	19.8	0.0	0.00081	19.1	0.0	1.5	1	1	0	1	1	1	1	Putative	RNA	methylase	family	UPF0020
Methyltransf_23	PF13489.6	gi|345005735|ref|YP_004808588.1|	-	0.047	13.5	0.0	0.052	13.4	0.0	1.2	1	0	0	1	1	1	0	Methyltransferase	domain
Methyltransf_32	PF13679.6	gi|345005735|ref|YP_004808588.1|	-	0.11	12.4	0.0	0.19	11.7	0.0	1.3	1	0	0	1	1	1	0	Methyltransferase	domain
AP_endonuc_2	PF01261.24	gi|345005736|ref|YP_004808589.1|	-	5.1e-05	22.8	0.2	6.1e-05	22.6	0.2	1.1	1	0	0	1	1	1	1	Xylose	isomerase-like	TIM	barrel
Pilus_CpaD	PF09476.10	gi|345005736|ref|YP_004808589.1|	-	0.023	14.5	0.1	0.49	10.1	0.0	2.0	1	1	1	2	2	2	0	Pilus	biogenesis	CpaD	protein	(pilus_cpaD)
TOBE_2	PF08402.10	gi|345005736|ref|YP_004808589.1|	-	0.058	13.6	0.2	0.12	12.5	0.1	1.6	2	0	0	2	2	2	0	TOBE	domain
TFIIB	PF00382.19	gi|345005737|ref|YP_004808590.1|	-	1.5e-43	146.7	1.1	7.1e-24	83.6	0.1	2.3	2	0	0	2	2	2	2	Transcription	factor	TFIIB	repeat
TF_Zn_Ribbon	PF08271.12	gi|345005737|ref|YP_004808590.1|	-	2.9e-17	61.9	2.3	4.9e-17	61.2	2.3	1.4	1	0	0	1	1	1	1	TFIIB	zinc-binding
Sigma70_r4	PF04545.16	gi|345005737|ref|YP_004808590.1|	-	0.011	15.2	1.4	0.21	11.1	0.1	3.4	3	1	0	3	3	3	0	Sigma-70,	region	4
PhnA_Zn_Ribbon	PF08274.12	gi|345005737|ref|YP_004808590.1|	-	0.018	14.9	4.0	0.038	14.0	4.0	1.5	1	0	0	1	1	1	0	PhnA	Zinc-Ribbon
Elf1	PF05129.13	gi|345005737|ref|YP_004808590.1|	-	0.019	15.0	0.1	0.042	13.9	0.1	1.6	1	0	0	1	1	1	0	Transcription	elongation	factor	Elf1	like
Ribosomal_S27e	PF01667.17	gi|345005737|ref|YP_004808590.1|	-	0.02	14.6	0.2	0.039	13.7	0.2	1.4	1	0	0	1	1	1	0	Ribosomal	protein	S27
A2L_zn_ribbon	PF08792.10	gi|345005737|ref|YP_004808590.1|	-	0.03	14.0	3.4	0.59	9.9	3.8	2.3	1	1	1	2	2	2	0	A2L	zinc	ribbon	domain
OrfB_Zn_ribbon	PF07282.11	gi|345005737|ref|YP_004808590.1|	-	0.064	13.2	0.6	0.18	11.8	0.5	1.8	2	0	0	2	2	1	0	Putative	transposase	DNA-binding	domain
HTH_31	PF13560.6	gi|345005737|ref|YP_004808590.1|	-	0.064	13.6	1.7	32	5.0	0.1	3.5	3	0	0	3	3	3	0	Helix-turn-helix	domain
HTH_23	PF13384.6	gi|345005737|ref|YP_004808590.1|	-	0.081	12.7	0.5	0.75	9.7	0.1	2.8	3	0	0	3	3	2	0	Homeodomain-like	domain
HTH_3	PF01381.22	gi|345005737|ref|YP_004808590.1|	-	0.085	12.9	0.1	4.2	7.5	0.0	3.2	3	0	0	3	3	3	0	Helix-turn-helix
TrmB	PF01978.19	gi|345005737|ref|YP_004808590.1|	-	0.1	12.5	0.7	4.9	7.1	0.0	3.2	3	0	0	3	3	3	0	Sugar-specific	transcriptional	regulator	TrmB
RPA_interact_C	PF14768.6	gi|345005737|ref|YP_004808590.1|	-	0.12	13.0	0.1	0.26	11.9	0.0	1.7	2	0	0	2	2	1	0	Replication	protein	A	interacting	C-terminal
Trm112p	PF03966.16	gi|345005737|ref|YP_004808590.1|	-	0.12	13.0	2.1	0.81	10.3	2.1	2.4	1	1	0	1	1	1	0	Trm112p-like	protein
Lar_restr_allev	PF14354.6	gi|345005737|ref|YP_004808590.1|	-	0.13	12.6	0.1	0.35	11.3	0.1	1.8	1	0	0	1	1	1	0	Restriction	alleviation	protein	Lar
Zn_Tnp_IS1	PF03811.13	gi|345005737|ref|YP_004808590.1|	-	0.15	11.8	0.2	0.49	10.2	0.2	1.8	1	0	0	1	1	1	0	InsA	N-terminal	domain
Zn-ribbon_8	PF09723.10	gi|345005737|ref|YP_004808590.1|	-	0.86	9.8	3.4	20	5.4	1.0	2.5	1	1	0	2	2	2	0	Zinc	ribbon	domain
zf-trcl	PF13451.6	gi|345005737|ref|YP_004808590.1|	-	1	9.3	5.1	0.98	9.4	0.3	2.5	1	1	1	2	2	2	0	Probable	zinc-ribbon	domain
PMT_2	PF13231.6	gi|345005738|ref|YP_004808591.1|	-	0.00089	19.5	1.3	0.00089	19.5	1.3	4.4	4	1	1	5	5	5	1	Dolichyl-phosphate-mannose-protein	mannosyltransferase
TatC	PF00902.18	gi|345005738|ref|YP_004808591.1|	-	0.16	11.8	5.8	1.3	8.8	0.0	2.9	2	1	0	2	2	2	0	Sec-independent	protein	translocase	protein	(TatC)
Usp	PF00582.26	gi|345005740|ref|YP_004808593.1|	-	4.9e-42	143.8	2.4	5.5e-42	143.6	2.4	1.0	1	0	0	1	1	1	1	Universal	stress	protein	family
Oxidored_nitro	PF00148.19	gi|345005740|ref|YP_004808593.1|	-	0.036	12.8	0.1	0.046	12.5	0.1	1.1	1	0	0	1	1	1	0	Nitrogenase	component	1	type	Oxidoreductase
MGS	PF02142.22	gi|345005740|ref|YP_004808593.1|	-	0.052	13.7	0.3	0.084	13.1	0.3	1.5	1	1	0	1	1	1	0	MGS-like	domain
Fer2	PF00111.27	gi|345005741|ref|YP_004808594.1|	-	1.3e-11	44.3	2.8	1.7e-11	43.9	2.8	1.2	1	0	0	1	1	1	1	2Fe-2S	iron-sulfur	cluster	binding	domain
Fer2_3	PF13085.6	gi|345005741|ref|YP_004808594.1|	-	0.014	15.4	0.1	0.015	15.3	0.1	1.2	1	0	0	1	1	1	0	2Fe-2S	iron-sulfur	cluster	binding	domain
Fer2_4	PF13510.6	gi|345005741|ref|YP_004808594.1|	-	0.046	13.8	0.2	0.068	13.2	0.2	1.4	1	1	0	1	1	1	0	2Fe-2S	iron-sulfur	cluster	binding	domain
DHODB_Fe-S_bind	PF10418.9	gi|345005741|ref|YP_004808594.1|	-	0.059	13.2	0.5	0.14	12.0	0.3	1.7	2	0	0	2	2	2	0	Iron-sulfur	cluster	binding	domain	of	dihydroorotate	dehydrogenase	B
Lactamase_B	PF00753.27	gi|345005742|ref|YP_004808595.1|	-	5.3e-13	49.4	3.7	9.9e-13	48.5	3.7	1.4	1	0	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Rhodanese	PF00581.20	gi|345005742|ref|YP_004808595.1|	-	1.3e-08	35.3	0.0	2.3e-08	34.5	0.0	1.4	1	0	0	1	1	1	1	Rhodanese-like	domain
Lactamase_B_2	PF12706.7	gi|345005742|ref|YP_004808595.1|	-	0.00056	19.5	1.4	0.0015	18.1	1.4	1.7	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
Rubrerythrin	PF02915.17	gi|345005743|ref|YP_004808596.1|	-	0.0019	18.6	1.3	0.0036	17.7	0.3	1.9	2	0	0	2	2	2	1	Rubrerythrin
Peptidase_S8	PF00082.22	gi|345005744|ref|YP_004808597.1|	-	3.3e-49	167.8	12.4	5.3e-49	167.1	12.4	1.3	1	0	0	1	1	1	1	Subtilase	family
UCR_Fe-S_N	PF10399.9	gi|345005744|ref|YP_004808597.1|	-	0.023	14.1	3.6	0.077	12.4	3.6	1.9	1	0	0	1	1	1	0	Ubiquitinol-cytochrome	C	reductase	Fe-S	subunit	TAT	signal
DUF2797	PF10977.8	gi|345005745|ref|YP_004808598.1|	-	5.4e-31	108.3	4.4	7.8e-26	91.4	1.5	2.2	1	1	1	2	2	2	2	Protein	of	unknown	function	(DUF2797)
SBDS	PF01172.18	gi|345005746|ref|YP_004808599.1|	-	2.6e-22	78.7	0.0	3.8e-22	78.2	0.0	1.3	1	0	0	1	1	1	1	Shwachman-Bodian-Diamond	syndrome	(SBDS)	protein
SBDS_C	PF09377.10	gi|345005746|ref|YP_004808599.1|	-	2.4e-17	63.0	0.0	4.2e-17	62.2	0.0	1.4	1	0	0	1	1	1	1	SBDS	protein	C-terminal	domain
Esterase_phd	PF10503.9	gi|345005746|ref|YP_004808599.1|	-	0.21	11.1	0.0	0.29	10.6	0.0	1.2	1	0	0	1	1	1	0	Esterase	PHB	depolymerase
FUN14	PF04930.15	gi|345005747|ref|YP_004808600.1|	-	3.3e-19	69.1	3.4	4.1e-19	68.8	3.4	1.1	1	0	0	1	1	1	1	FUN14	family
Cu	PF17563.2	gi|345005747|ref|YP_004808600.1|	-	2.7	8.3	6.5	3.9	7.8	1.0	2.3	2	0	0	2	2	2	0	Cupiennin
Prenyltransf	PF01255.19	gi|345005748|ref|YP_004808601.1|	-	2.2e-68	230.2	0.0	2.7e-68	229.8	0.0	1.1	1	0	0	1	1	1	1	Putative	undecaprenyl	diphosphate	synthase
Prenyltransf	PF01255.19	gi|345005749|ref|YP_004808602.1|	-	7.5e-26	91.0	0.0	1.9e-25	89.7	0.0	1.6	1	1	0	2	2	2	1	Putative	undecaprenyl	diphosphate	synthase
DUF92	PF01940.16	gi|345005750|ref|YP_004808603.1|	-	4.6e-47	160.4	17.0	4.6e-47	160.4	17.0	3.3	2	2	0	2	2	2	1	Integral	membrane	protein	DUF92
Acetyltransf_1	PF00583.25	gi|345005751|ref|YP_004808604.1|	-	4.4e-12	46.3	0.0	5.5e-12	45.9	0.0	1.1	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_10	PF13673.7	gi|345005751|ref|YP_004808604.1|	-	2.8e-10	40.2	0.0	3.4e-10	40.0	0.0	1.1	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_7	PF13508.7	gi|345005751|ref|YP_004808604.1|	-	5.3e-09	36.4	0.0	7.2e-09	36.0	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
FR47	PF08445.10	gi|345005751|ref|YP_004808604.1|	-	1.1e-07	31.7	0.0	1.8e-07	31.0	0.0	1.3	1	0	0	1	1	1	1	FR47-like	protein
Acetyltransf_9	PF13527.7	gi|345005751|ref|YP_004808604.1|	-	0.028	14.5	0.0	0.071	13.2	0.0	1.6	2	0	0	2	2	2	0	Acetyltransferase	(GNAT)	domain
Acetyltransf_3	PF13302.7	gi|345005751|ref|YP_004808604.1|	-	0.074	13.7	0.0	0.088	13.5	0.0	1.3	1	0	0	1	1	1	0	Acetyltransferase	(GNAT)	domain
PAS_8	PF13188.7	gi|345005751|ref|YP_004808604.1|	-	0.13	12.4	0.1	0.28	11.2	0.0	1.7	2	0	0	2	2	2	0	PAS	domain
Toprim_4	PF13662.6	gi|345005752|ref|YP_004808605.1|	-	6.3e-12	45.8	0.3	1.7e-11	44.5	0.3	1.7	1	0	0	1	1	1	1	Toprim	domain
Toprim_2	PF13155.6	gi|345005752|ref|YP_004808605.1|	-	0.0022	18.4	0.0	0.0045	17.4	0.0	1.5	1	0	0	1	1	1	1	Toprim-like
HK97-gp10_like	PF04883.12	gi|345005752|ref|YP_004808605.1|	-	0.013	16.5	0.3	0.055	14.5	0.2	2.1	2	0	0	2	2	2	0	Bacteriophage	HK97-gp10,	putative	tail-component
DUF3311	PF11755.8	gi|345005753|ref|YP_004808606.1|	-	1.6e-12	47.2	21.8	1.7e-12	47.0	21.8	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3311)
TRAP-gamma	PF07074.12	gi|345005753|ref|YP_004808606.1|	-	0.13	11.8	2.2	0.17	11.5	2.0	1.3	1	1	0	1	1	1	0	Translocon-associated	protein,	gamma	subunit	(TRAP-gamma)
SSF	PF00474.17	gi|345005754|ref|YP_004808607.1|	-	2.1e-42	145.4	21.2	2.9e-42	145.0	21.2	1.2	1	0	0	1	1	1	1	Sodium:solute	symporter	family
PDR_assoc	PF08370.11	gi|345005754|ref|YP_004808607.1|	-	0.024	14.4	1.3	0.11	12.2	1.3	2.2	1	0	0	1	1	1	0	Plant	PDR	ABC	transporter	associated
Peptidase_S8	PF00082.22	gi|345005757|ref|YP_004808610.1|	-	1.6e-17	63.7	10.7	1.6e-14	53.9	4.5	2.4	2	1	1	3	3	3	2	Subtilase	family
PPC	PF04151.15	gi|345005757|ref|YP_004808610.1|	-	8.5e-06	26.8	1.8	0.0001	23.3	0.1	3.2	2	1	0	2	2	2	1	Bacterial	pre-peptidase	C-terminal	domain
DUF4350	PF14258.6	gi|345005757|ref|YP_004808610.1|	-	0.0082	16.6	0.4	1	9.9	0.1	2.9	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF4350)
HTH_20	PF12840.7	gi|345005758|ref|YP_004808611.1|	-	1.8e-10	40.7	0.9	3.3e-10	39.9	0.9	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_5	PF01022.20	gi|345005758|ref|YP_004808611.1|	-	2.8e-07	30.3	1.0	4.1e-07	29.7	0.2	1.7	2	0	0	2	2	2	1	Bacterial	regulatory	protein,	arsR	family
MarR_2	PF12802.7	gi|345005758|ref|YP_004808611.1|	-	1.8e-05	24.5	0.1	3.6e-05	23.6	0.1	1.4	1	0	0	1	1	1	1	MarR	family
TrmB	PF01978.19	gi|345005758|ref|YP_004808611.1|	-	9.2e-05	22.3	0.0	0.00015	21.6	0.0	1.3	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_24	PF13412.6	gi|345005758|ref|YP_004808611.1|	-	0.0004	19.9	0.0	0.0007	19.1	0.0	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
Rrf2	PF02082.20	gi|345005758|ref|YP_004808611.1|	-	0.0067	16.8	0.1	0.013	15.8	0.1	1.4	1	0	0	1	1	1	1	Transcriptional	regulator
Phage_rep_org_N	PF09681.10	gi|345005758|ref|YP_004808611.1|	-	0.02	14.8	0.0	0.028	14.3	0.0	1.2	1	0	0	1	1	1	0	N-terminal	phage	replisome	organiser	(Phage_rep_org_N)
DUF2513	PF10711.9	gi|345005758|ref|YP_004808611.1|	-	0.022	15.0	0.1	0.033	14.5	0.1	1.2	1	0	0	1	1	1	0	Hypothetical	protein	(DUF2513)
ArsR	PF09824.9	gi|345005758|ref|YP_004808611.1|	-	0.048	13.2	0.0	0.068	12.8	0.0	1.2	1	0	0	1	1	1	0	ArsR	transcriptional	regulator
HTH_45	PF14947.6	gi|345005758|ref|YP_004808611.1|	-	0.057	13.4	0.0	0.096	12.7	0.0	1.3	1	0	0	1	1	1	0	Winged	helix-turn-helix
HTH_IclR	PF09339.10	gi|345005758|ref|YP_004808611.1|	-	0.059	13.2	0.4	0.11	12.4	0.4	1.4	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
TFIIE_alpha	PF02002.17	gi|345005758|ref|YP_004808611.1|	-	0.081	12.8	0.1	0.12	12.2	0.0	1.3	1	1	0	1	1	1	0	TFIIE	alpha	subunit
HTH_Crp_2	PF13545.6	gi|345005758|ref|YP_004808611.1|	-	0.086	12.8	0.1	0.14	12.2	0.1	1.3	1	0	0	1	1	1	0	Crp-like	helix-turn-helix	domain
FaeA	PF04703.12	gi|345005758|ref|YP_004808611.1|	-	0.088	13.2	0.0	0.16	12.4	0.0	1.4	1	0	0	1	1	1	0	FaeA-like	protein
Sigma70_r4	PF04545.16	gi|345005758|ref|YP_004808611.1|	-	0.13	11.8	0.0	0.2	11.2	0.0	1.4	1	0	0	1	1	1	0	Sigma-70,	region	4
MFS_1	PF07690.16	gi|345005759|ref|YP_004808612.1|	-	1.1e-40	139.7	78.1	9.8e-35	120.1	44.6	2.0	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
MFS_1_like	PF12832.7	gi|345005759|ref|YP_004808612.1|	-	1.2e-05	24.3	7.1	1.2e-05	24.3	7.1	2.0	1	1	1	2	2	2	1	MFS_1	like	family
Fuseless	PF15993.5	gi|345005759|ref|YP_004808612.1|	-	0.87	8.7	10.6	10	5.2	0.1	3.8	3	1	0	3	3	3	0	Fuseless
MFS_4	PF06779.14	gi|345005759|ref|YP_004808612.1|	-	0.98	8.6	39.7	4.3	6.5	39.7	1.8	1	1	0	1	1	1	0	Uncharacterised	MFS-type	transporter	YbfB
LEA_2	PF03168.13	gi|345005760|ref|YP_004808613.1|	-	2e-16	60.4	0.1	2.4e-07	31.2	0.0	2.3	2	0	0	2	2	2	2	Late	embryogenesis	abundant	protein
DUF4307	PF14155.6	gi|345005760|ref|YP_004808613.1|	-	0.16	11.8	0.3	0.8	9.6	0.3	2.1	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4307)
TALPID3	PF15324.6	gi|345005760|ref|YP_004808613.1|	-	6.4	4.3	9.0	8.9	3.8	9.0	1.1	1	0	0	1	1	1	0	Hedgehog	signalling	target
AIRS_C	PF02769.22	gi|345005762|ref|YP_004808615.1|	-	8.2e-25	87.8	1.4	1.2e-24	87.2	1.4	1.2	1	0	0	1	1	1	1	AIR	synthase	related	protein,	C-terminal	domain
AIRS	PF00586.24	gi|345005762|ref|YP_004808615.1|	-	5.2e-10	39.8	0.2	1.2e-09	38.7	0.2	1.6	1	0	0	1	1	1	1	AIR	synthase	related	protein,	N-terminal	domain
Aminotran_5	PF00266.19	gi|345005763|ref|YP_004808616.1|	-	5.7e-18	65.0	0.0	1.4e-17	63.8	0.0	1.6	1	1	0	1	1	1	1	Aminotransferase	class-V
DegT_DnrJ_EryC1	PF01041.17	gi|345005763|ref|YP_004808616.1|	-	0.012	15.0	0.2	0.2	10.9	0.2	2.1	2	0	0	2	2	2	0	DegT/DnrJ/EryC1/StrS	aminotransferase	family
Cys_Met_Meta_PP	PF01053.20	gi|345005763|ref|YP_004808616.1|	-	0.017	13.6	0.0	0.026	13.1	0.0	1.1	1	0	0	1	1	1	0	Cys/Met	metabolism	PLP-dependent	enzyme
Aminotran_3	PF00202.21	gi|345005763|ref|YP_004808616.1|	-	0.21	10.2	0.0	0.29	9.7	0.0	1.2	1	0	0	1	1	1	0	Aminotransferase	class-III
Pyr_redox_2	PF07992.14	gi|345005765|ref|YP_004808618.1|	-	3.7e-32	111.7	2.1	4.7e-32	111.4	2.1	1.1	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox	PF00070.27	gi|345005765|ref|YP_004808618.1|	-	1.4e-08	35.2	0.3	4.8e-06	27.1	0.1	2.6	2	0	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_binding_9	PF13454.6	gi|345005765|ref|YP_004808618.1|	-	0.00051	20.1	3.4	4.3	7.3	0.0	3.9	2	2	2	4	4	4	3	FAD-NAD(P)-binding
NAD_binding_8	PF13450.6	gi|345005765|ref|YP_004808618.1|	-	0.0085	16.3	0.0	9.7	6.5	0.0	3.1	3	0	0	3	3	3	2	NAD(P)-binding	Rossmann-like	domain
Lycopene_cycl	PF05834.12	gi|345005765|ref|YP_004808618.1|	-	0.05	12.7	1.3	15	4.5	0.0	3.2	4	0	0	4	4	4	0	Lycopene	cyclase	protein
Radical_SAM	PF04055.21	gi|345005766|ref|YP_004808619.1|	-	1.2e-23	84.4	0.0	2.7e-23	83.2	0.0	1.7	1	0	0	1	1	1	1	Radical	SAM	superfamily
Radical_SAM_C	PF16199.5	gi|345005766|ref|YP_004808619.1|	-	1.9e-23	82.2	0.0	3.4e-23	81.4	0.0	1.4	1	0	0	1	1	1	1	Radical_SAM	C-terminal	domain
Acetyltransf_1	PF00583.25	gi|345005766|ref|YP_004808619.1|	-	1.6e-06	28.3	0.1	3.5e-06	27.2	0.1	1.6	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_10	PF13673.7	gi|345005766|ref|YP_004808619.1|	-	0.0076	16.2	0.1	0.017	15.1	0.1	1.6	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Antimicrobial_6	PF08036.11	gi|345005766|ref|YP_004808619.1|	-	2.3	8.4	4.7	1.3	9.1	1.4	2.4	2	0	0	2	2	2	0	Diapausin	family	of	antimicrobial	peptide
FbpA	PF05833.11	gi|345005767|ref|YP_004808620.1|	-	5.5e-82	275.9	0.1	7.5e-82	275.5	0.1	1.1	1	0	0	1	1	1	1	Fibronectin-binding	protein	A	N-terminus	(FbpA)
NFACT-R_1	PF05670.13	gi|345005767|ref|YP_004808620.1|	-	4.7e-24	85.1	0.0	9.1e-24	84.2	0.0	1.5	1	0	0	1	1	1	1	NFACT	protein	RNA	binding	domain
NFACT-R_2	PF18297.1	gi|345005767|ref|YP_004808620.1|	-	4.6e-05	23.5	0.0	0.00014	22.0	0.0	1.8	1	0	0	1	1	1	1	NFACT	protein	RNA	binding	domain
PreAtp-grasp	PF18604.1	gi|345005768|ref|YP_004808621.1|	-	0.018	14.7	0.0	0.018	14.7	0.0	1.0	1	0	0	1	1	1	0	Pre	ATP-grasp	domain
MAF_flag10	PF01973.18	gi|345005769|ref|YP_004808622.1|	-	7.7e-16	58.3	0.0	1e-15	57.8	0.0	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF115
eRF1_1	PF03463.15	gi|345005770|ref|YP_004808623.1|	-	4.3e-27	94.6	0.0	7.1e-27	94.0	0.0	1.3	1	0	0	1	1	1	1	eRF1	domain	1
eRF1_3	PF03465.15	gi|345005770|ref|YP_004808623.1|	-	8.3e-25	87.5	3.4	9.2e-25	87.3	0.3	2.4	3	0	0	3	3	3	1	eRF1	domain	3
eRF1_2	PF03464.15	gi|345005770|ref|YP_004808623.1|	-	6.5e-09	36.2	0.1	2.7e-07	31.0	0.1	2.3	1	1	0	1	1	1	1	eRF1	domain	2
OCD_Mu_crystall	PF02423.15	gi|345005771|ref|YP_004808624.1|	-	4.7e-66	222.9	0.8	5.6e-66	222.6	0.8	1.1	1	0	0	1	1	1	1	Ornithine	cyclodeaminase/mu-crystallin	family
Shikimate_DH	PF01488.20	gi|345005771|ref|YP_004808624.1|	-	8.8e-06	25.8	0.0	1.3e-05	25.3	0.0	1.2	1	0	0	1	1	1	1	Shikimate	/	quinate	5-dehydrogenase
F420_oxidored	PF03807.17	gi|345005771|ref|YP_004808624.1|	-	0.0049	17.4	0.4	0.01	16.4	0.4	1.5	1	0	0	1	1	1	1	NADP	oxidoreductase	coenzyme	F420-dependent
MFS_1	PF07690.16	gi|345005772|ref|YP_004808625.1|	-	1e-39	136.5	58.4	7.3e-27	94.2	26.6	2.2	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
DUF1700	PF08006.11	gi|345005772|ref|YP_004808625.1|	-	9.7	5.7	12.7	2	8.0	0.2	2.9	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF1700)
DUF3054	PF11255.8	gi|345005773|ref|YP_004808626.1|	-	1.3e-19	70.7	12.9	1.5e-19	70.5	12.9	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3054)
Methyltransf_11	PF08241.12	gi|345005774|ref|YP_004808627.1|	-	2.8e-20	72.8	0.1	4.5e-20	72.1	0.1	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.6	gi|345005774|ref|YP_004808627.1|	-	1.2e-17	64.3	0.1	2e-17	63.6	0.1	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.6	gi|345005774|ref|YP_004808627.1|	-	7.1e-16	58.5	0.0	8.7e-16	58.2	0.0	1.1	1	0	0	1	1	1	1	Methyltransferase	domain
Ubie_methyltran	PF01209.18	gi|345005774|ref|YP_004808627.1|	-	1.7e-10	40.6	0.0	2.2e-10	40.2	0.0	1.3	1	0	0	1	1	1	1	ubiE/COQ5	methyltransferase	family
Methyltransf_31	PF13847.6	gi|345005774|ref|YP_004808627.1|	-	2.3e-09	37.2	0.0	3.2e-09	36.8	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.12	gi|345005774|ref|YP_004808627.1|	-	1.4e-08	35.3	0.0	2.5e-08	34.6	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
MetW	PF07021.12	gi|345005774|ref|YP_004808627.1|	-	8e-06	25.6	0.0	1e-05	25.2	0.0	1.1	1	0	0	1	1	1	1	Methionine	biosynthesis	protein	MetW
Methyltransf_29	PF03141.16	gi|345005774|ref|YP_004808627.1|	-	0.00017	20.3	0.0	0.0002	20.1	0.0	1.0	1	0	0	1	1	1	1	Putative	S-adenosyl-L-methionine-dependent	methyltransferase
Methyltransf_24	PF13578.6	gi|345005774|ref|YP_004808627.1|	-	0.0062	17.6	0.1	0.0089	17.0	0.1	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
YcaO	PF02624.16	gi|345005774|ref|YP_004808627.1|	-	0.032	13.5	0.0	0.056	12.7	0.0	1.4	1	0	0	1	1	1	0	YcaO	cyclodehydratase,	ATP-ad	Mg2+-binding
Acetyltransf_1	PF00583.25	gi|345005775|ref|YP_004808628.1|	-	6.1e-07	29.7	0.0	8.9e-07	29.2	0.0	1.3	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_CG	PF14542.6	gi|345005775|ref|YP_004808628.1|	-	0.0032	17.5	0.0	0.0058	16.7	0.0	1.4	1	0	0	1	1	1	1	GCN5-related	N-acetyl-transferase
Acetyltransf_10	PF13673.7	gi|345005775|ref|YP_004808628.1|	-	0.0071	16.3	0.0	0.01	15.8	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
XPG_I	PF00867.18	gi|345005776|ref|YP_004808629.1|	-	6.2e-24	84.2	0.0	1.3e-23	83.1	0.0	1.6	1	0	0	1	1	1	1	XPG	I-region
XPG_N	PF00752.17	gi|345005776|ref|YP_004808629.1|	-	4.3e-13	49.6	0.0	7.4e-13	48.9	0.0	1.4	1	0	0	1	1	1	1	XPG	N-terminal	domain
5_3_exonuc	PF01367.20	gi|345005776|ref|YP_004808629.1|	-	9e-05	23.0	0.0	0.00025	21.6	0.0	1.7	1	0	0	1	1	1	1	5'-3'	exonuclease,	C-terminal	SAM	fold
LAX	PF15681.5	gi|345005776|ref|YP_004808629.1|	-	0.057	12.2	0.3	0.079	11.8	0.3	1.1	1	0	0	1	1	1	0	Lymphocyte	activation	family	X
Pox_G5	PF04599.12	gi|345005776|ref|YP_004808629.1|	-	0.15	11.0	0.1	0.34	9.8	0.1	1.5	2	0	0	2	2	2	0	Poxvirus	G5	protein
DUF3631	PF12307.8	gi|345005777|ref|YP_004808630.1|	-	0.07	13.3	0.3	0.096	12.9	0.3	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3631)
BolA	PF01722.18	gi|345005778|ref|YP_004808631.1|	-	6.9e-19	67.9	0.5	8e-19	67.7	0.5	1.1	1	0	0	1	1	1	1	BolA-like	protein
Lyase_1	PF00206.20	gi|345005779|ref|YP_004808632.1|	-	6.8e-108	360.8	0.0	6.8e-108	360.8	0.0	1.8	2	0	0	2	2	2	1	Lyase
FumaraseC_C	PF10415.9	gi|345005779|ref|YP_004808632.1|	-	1.4e-23	83.1	0.4	1.4e-23	83.1	0.4	2.3	3	0	0	3	3	3	1	Fumarase	C	C-terminus
HsbA	PF12296.8	gi|345005779|ref|YP_004808632.1|	-	0.059	13.8	0.3	0.52	10.7	0.0	2.7	2	0	0	2	2	2	0	Hydrophobic	surface	binding	protein	A
ASL_C2	PF14698.6	gi|345005779|ref|YP_004808632.1|	-	0.073	13.8	5.0	1	10.1	0.1	3.7	4	0	0	4	4	4	0	Argininosuccinate	lyase	C-terminal
GatB_N	PF02934.15	gi|345005781|ref|YP_004808634.1|	-	3e-64	217.0	0.0	4.3e-64	216.5	0.0	1.2	1	0	0	1	1	1	1	GatB/GatE	catalytic	domain
GatB_Yqey	PF02637.18	gi|345005781|ref|YP_004808634.1|	-	6.2e-22	78.1	0.0	1.1e-21	77.3	0.0	1.4	1	0	0	1	1	1	1	GatB	domain
GAD	PF02938.14	gi|345005781|ref|YP_004808634.1|	-	3.4e-15	56.0	0.1	7.2e-15	55.0	0.1	1.6	1	0	0	1	1	1	1	GAD	domain
YqeY	PF09424.10	gi|345005781|ref|YP_004808634.1|	-	0.026	14.6	0.4	0.058	13.5	0.4	1.6	1	0	0	1	1	1	0	Yqey-like	protein
tRNA_synt_1c_R1	PF04558.15	gi|345005781|ref|YP_004808634.1|	-	0.075	13.0	0.0	0.15	12.1	0.0	1.4	1	0	0	1	1	1	0	Glutaminyl-tRNA	synthetase,	non-specific	RNA	binding	region	part	1
Rod-binding	PF10135.9	gi|345005781|ref|YP_004808634.1|	-	0.088	13.4	0.1	0.26	11.9	0.1	1.8	1	0	0	1	1	1	0	Rod	binding	protein
CARDB	PF07705.11	gi|345005782|ref|YP_004808635.1|	-	7.4e-09	35.8	8.8	0.001	19.3	0.8	3.4	4	0	0	4	4	4	2	CARDB
Transglut_C	PF00927.22	gi|345005782|ref|YP_004808635.1|	-	5.8e-08	32.8	0.0	0.016	15.3	0.0	4.2	4	0	0	4	4	4	2	Transglutaminase	family,	C-terminal	ig	like	domain
Ig_GlcNase	PF18368.1	gi|345005782|ref|YP_004808635.1|	-	0.01	16.0	1.1	27	5.0	0.2	4.4	3	2	0	3	3	3	0	Exo-beta-D-glucosaminidase	Ig-fold	domain
ASH	PF15780.5	gi|345005782|ref|YP_004808635.1|	-	0.088	13.0	1.6	2.8	8.2	0.1	3.6	3	1	1	4	4	4	0	Abnormal	spindle-like	microcephaly-assoc'd,	ASPM-SPD-2-Hydin
Calycin_like	PF13944.6	gi|345005782|ref|YP_004808635.1|	-	0.22	11.9	4.8	1.9	8.8	0.1	3.6	4	0	0	4	4	4	0	Calycin-like	beta-barrel	domain
ABC_tran	PF00005.27	gi|345005783|ref|YP_004808636.1|	-	4.8e-34	117.8	0.0	6e-34	117.5	0.0	1.1	1	0	0	1	1	1	1	ABC	transporter
AAA_29	PF13555.6	gi|345005783|ref|YP_004808636.1|	-	7.4e-05	22.4	0.0	0.00013	21.6	0.0	1.3	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
RsgA_GTPase	PF03193.16	gi|345005783|ref|YP_004808636.1|	-	0.00024	21.1	0.1	0.00039	20.4	0.1	1.3	1	0	0	1	1	1	1	RsgA	GTPase
AAA_22	PF13401.6	gi|345005783|ref|YP_004808636.1|	-	0.0015	18.8	0.1	0.007	16.7	0.1	2.0	1	1	0	1	1	1	1	AAA	domain
SMC_N	PF02463.19	gi|345005783|ref|YP_004808636.1|	-	0.0017	17.8	0.1	0.094	12.1	0.1	2.1	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_16	PF13191.6	gi|345005783|ref|YP_004808636.1|	-	0.0019	18.6	0.0	0.0023	18.3	0.0	1.3	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_21	PF13304.6	gi|345005783|ref|YP_004808636.1|	-	0.029	14.2	0.0	2	8.1	0.0	2.1	1	1	0	2	2	2	0	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_30	PF13604.6	gi|345005783|ref|YP_004808636.1|	-	0.043	13.5	0.2	0.056	13.2	0.2	1.5	1	1	0	1	1	1	0	AAA	domain
AAA_25	PF13481.6	gi|345005783|ref|YP_004808636.1|	-	0.047	13.3	0.0	0.084	12.4	0.0	1.6	2	0	0	2	2	2	0	AAA	domain
AAA_23	PF13476.6	gi|345005783|ref|YP_004808636.1|	-	0.059	13.9	0.0	0.092	13.2	0.0	1.2	1	0	0	1	1	1	0	AAA	domain
MacB_PCD	PF12704.7	gi|345005784|ref|YP_004808637.1|	-	2.1e-23	83.7	6.9	2.1e-23	83.7	6.9	2.2	2	1	0	2	2	2	1	MacB-like	periplasmic	core	domain
FtsX	PF02687.21	gi|345005784|ref|YP_004808637.1|	-	7.8e-09	35.9	1.5	7.8e-09	35.9	1.5	3.0	3	0	0	3	3	3	1	FtsX-like	permease	family
STb_secrete	PF09075.10	gi|345005784|ref|YP_004808637.1|	-	2.6	8.2	3.8	4.5	7.4	1.9	2.3	2	0	0	2	2	2	0	Heat-stable	enterotoxin	B,	secretory
LptF_LptG	PF03739.14	gi|345005784|ref|YP_004808637.1|	-	7.8	5.2	12.9	0.15	10.8	2.3	2.4	2	1	0	2	2	2	0	Lipopolysaccharide	export	system	permease	LptF/LptG
AsnC_trans_reg	PF01037.21	gi|345005785|ref|YP_004808638.1|	-	1.4e-10	40.9	0.7	2.2e-10	40.3	0.7	1.3	1	0	0	1	1	1	1	Lrp/AsnC	ligand	binding	domain
HTH_24	PF13412.6	gi|345005785|ref|YP_004808638.1|	-	2.2e-05	23.9	0.1	5.4e-05	22.7	0.1	1.7	1	1	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_IclR	PF09339.10	gi|345005785|ref|YP_004808638.1|	-	0.00022	21.0	0.0	0.00066	19.4	0.0	1.8	2	0	0	2	2	2	1	IclR	helix-turn-helix	domain
HTH_20	PF12840.7	gi|345005785|ref|YP_004808638.1|	-	0.0023	17.9	0.0	0.0056	16.7	0.0	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_5	PF01022.20	gi|345005785|ref|YP_004808638.1|	-	0.0032	17.3	0.0	0.007	16.2	0.0	1.6	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
TrmB	PF01978.19	gi|345005785|ref|YP_004808638.1|	-	0.011	15.6	0.0	0.027	14.4	0.0	1.7	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
GYD	PF08734.11	gi|345005785|ref|YP_004808638.1|	-	0.014	15.4	0.0	0.022	14.7	0.0	1.3	1	0	0	1	1	1	0	GYD	domain
HTH_57	PF18679.1	gi|345005785|ref|YP_004808638.1|	-	0.15	12.3	0.0	0.35	11.2	0.0	1.6	1	0	0	1	1	1	0	ThcOx	helix	turn	helix	domain
Glycos_transf_1	PF00534.20	gi|345005785|ref|YP_004808638.1|	-	0.18	11.3	0.0	0.26	10.8	0.0	1.2	1	0	0	1	1	1	0	Glycosyl	transferases	group	1
MaoC_dehydratas	PF01575.19	gi|345005786|ref|YP_004808639.1|	-	4.6e-19	68.2	0.0	5.9e-19	67.8	0.0	1.1	1	0	0	1	1	1	1	MaoC	like	domain
MaoC_dehydrat_N	PF13452.6	gi|345005786|ref|YP_004808639.1|	-	8.4e-09	35.7	0.0	1.2e-08	35.2	0.0	1.2	1	0	0	1	1	1	1	N-terminal	half	of	MaoC	dehydratase
FabA	PF07977.13	gi|345005786|ref|YP_004808639.1|	-	0.06	13.0	0.0	0.071	12.7	0.0	1.3	1	1	0	1	1	1	0	FabA-like	domain
HlyD_D23	PF16576.5	gi|345005786|ref|YP_004808639.1|	-	0.096	11.9	0.0	0.12	11.6	0.0	1.2	1	0	0	1	1	1	0	Barrel-sandwich	domain	of	CusB	or	HlyD	membrane-fusion
SpoU_methylase	PF00588.19	gi|345005787|ref|YP_004808640.1|	-	5.1e-32	111.0	0.0	7.2e-32	110.5	0.0	1.2	1	0	0	1	1	1	1	SpoU	rRNA	Methylase	family
DUF2122	PF09895.9	gi|345005787|ref|YP_004808640.1|	-	0.037	14.4	0.0	0.065	13.6	0.0	1.4	1	0	0	1	1	1	0	RecB-family	nuclease	(DUF2122)
LppA	PF16708.5	gi|345005788|ref|YP_004808641.1|	-	0.15	11.9	0.1	0.22	11.4	0.1	1.2	1	0	0	1	1	1	0	Lipoprotein	confined	to	pathogenic	Mycobacterium
4HBT	PF03061.22	gi|345005789|ref|YP_004808642.1|	-	1e-16	61.0	0.0	1.4e-16	60.6	0.0	1.2	1	0	0	1	1	1	1	Thioesterase	superfamily
TrkA_N	PF02254.18	gi|345005790|ref|YP_004808643.1|	-	7.3e-21	74.6	0.9	1.6e-20	73.5	0.9	1.6	1	0	0	1	1	1	1	TrkA-N	domain
DHH	PF01368.20	gi|345005790|ref|YP_004808643.1|	-	1.1e-11	44.8	0.4	3.1e-10	40.2	0.1	2.4	2	0	0	2	2	2	1	DHH	family
DHHA1	PF02272.19	gi|345005790|ref|YP_004808643.1|	-	1.7e-07	31.7	0.1	1.8e-06	28.4	0.0	2.4	2	1	0	2	2	2	1	DHHA1	domain
Sacchrp_dh_NADP	PF03435.18	gi|345005790|ref|YP_004808643.1|	-	1.1e-06	29.0	0.7	2.9e-06	27.6	0.4	1.9	2	0	0	2	2	1	1	Saccharopine	dehydrogenase	NADP	binding	domain
ApbA	PF02558.16	gi|345005790|ref|YP_004808643.1|	-	6.5e-06	25.9	0.0	1.9e-05	24.3	0.0	1.9	1	1	0	1	1	1	1	Ketopantoate	reductase	PanE/ApbA
F420_oxidored	PF03807.17	gi|345005790|ref|YP_004808643.1|	-	1.1e-05	25.9	0.4	4.3e-05	24.0	0.2	2.1	2	0	0	2	2	1	1	NADP	oxidoreductase	coenzyme	F420-dependent
IlvN	PF07991.12	gi|345005790|ref|YP_004808643.1|	-	0.00025	20.7	0.9	0.00063	19.3	0.3	1.9	2	0	0	2	2	2	1	Acetohydroxy	acid	isomeroreductase,	NADPH-binding	domain
UDPG_MGDP_dh_N	PF03721.14	gi|345005790|ref|YP_004808643.1|	-	0.00058	19.5	0.1	0.0012	18.4	0.1	1.6	1	0	0	1	1	1	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
NAD_Gly3P_dh_N	PF01210.23	gi|345005790|ref|YP_004808643.1|	-	0.0014	18.6	0.0	0.0027	17.7	0.0	1.4	1	0	0	1	1	1	1	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
Epimerase	PF01370.21	gi|345005790|ref|YP_004808643.1|	-	0.0017	17.9	0.1	0.0035	16.8	0.1	1.6	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
NAD_binding_2	PF03446.15	gi|345005790|ref|YP_004808643.1|	-	0.0036	17.5	0.0	0.0066	16.6	0.0	1.4	1	0	0	1	1	1	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
2-Hacid_dh_C	PF02826.19	gi|345005790|ref|YP_004808643.1|	-	0.0036	16.7	0.0	0.19	11.1	0.0	2.5	2	0	0	2	2	2	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
NAD_binding_7	PF13241.6	gi|345005790|ref|YP_004808643.1|	-	0.0053	17.2	1.2	0.014	15.9	1.0	1.8	1	1	0	1	1	1	1	Putative	NAD(P)-binding
3HCDH_N	PF02737.18	gi|345005790|ref|YP_004808643.1|	-	0.0077	16.1	0.1	0.018	14.9	0.1	1.7	1	0	0	1	1	1	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
XdhC_C	PF13478.6	gi|345005790|ref|YP_004808643.1|	-	0.089	13.3	0.5	0.34	11.4	0.2	2.1	1	1	1	2	2	2	0	XdhC	Rossmann	domain
adh_short_C2	PF13561.6	gi|345005790|ref|YP_004808643.1|	-	0.11	12.0	2.3	0.31	10.6	1.0	2.2	2	1	0	2	2	2	0	Enoyl-(Acyl	carrier	protein)	reductase
adh_short	PF00106.25	gi|345005790|ref|YP_004808643.1|	-	0.13	11.7	0.4	0.44	10.0	0.1	2.0	2	1	1	3	3	3	0	short	chain	dehydrogenase
AlaDh_PNT_C	PF01262.21	gi|345005790|ref|YP_004808643.1|	-	0.13	11.5	1.3	0.26	10.5	0.6	1.8	2	0	0	2	2	2	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
PRC	PF05239.16	gi|345005793|ref|YP_004808646.1|	-	1.2e-13	50.9	0.7	1.4e-13	50.7	0.7	1.1	1	0	0	1	1	1	1	PRC-barrel	domain
DUF2171	PF09939.9	gi|345005793|ref|YP_004808646.1|	-	0.0065	16.7	0.2	0.016	15.5	0.2	1.6	1	1	0	1	1	1	1	Uncharacterized	protein	conserved	in	bacteria	(DUF2171)
RcnB	PF11776.8	gi|345005793|ref|YP_004808646.1|	-	0.025	14.6	0.2	0.046	13.8	0.2	1.4	1	0	0	1	1	1	0	Nickel/cobalt	transporter	regulator
FAD-oxidase_C	PF02913.19	gi|345005794|ref|YP_004808647.1|	-	3.9e-64	216.7	0.1	5.7e-63	212.9	0.0	2.6	2	0	0	2	2	2	1	FAD	linked	oxidases,	C-terminal	domain
FAD_binding_4	PF01565.23	gi|345005794|ref|YP_004808647.1|	-	3.5e-39	133.7	0.2	8.6e-39	132.5	0.2	1.7	1	0	0	1	1	1	1	FAD	binding	domain
Fer4_17	PF13534.6	gi|345005794|ref|YP_004808647.1|	-	1.6e-10	41.4	3.6	3.3e-10	40.4	3.6	1.6	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_8	PF13183.6	gi|345005794|ref|YP_004808647.1|	-	1.7e-09	38.0	4.5	4e-09	36.8	4.5	1.7	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
CCG	PF02754.16	gi|345005794|ref|YP_004808647.1|	-	3.3e-07	30.4	0.0	2.2e-05	24.6	0.0	3.0	3	0	0	3	3	2	1	Cysteine-rich	domain
Fer4_9	PF13187.6	gi|345005794|ref|YP_004808647.1|	-	0.00012	22.1	0.6	0.016	15.4	0.1	2.5	2	0	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_10	PF13237.6	gi|345005794|ref|YP_004808647.1|	-	0.00033	20.7	4.8	0.011	15.8	0.8	2.4	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Cytokin-bind	PF09265.10	gi|345005794|ref|YP_004808647.1|	-	0.0043	16.5	0.0	0.0067	15.9	0.0	1.2	1	0	0	1	1	1	1	Cytokinin	dehydrogenase	1,	FAD	and	cytokinin	binding
Fer4_7	PF12838.7	gi|345005794|ref|YP_004808647.1|	-	0.012	16.2	4.6	0.073	13.7	4.8	2.3	1	1	1	2	2	2	0	4Fe-4S	dicluster	domain
Fer4	PF00037.27	gi|345005794|ref|YP_004808647.1|	-	0.43	10.5	15.1	0.13	12.2	4.6	2.5	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_21	PF14697.6	gi|345005794|ref|YP_004808647.1|	-	0.5	10.5	6.9	0.16	12.1	0.3	2.7	3	0	0	3	3	3	0	4Fe-4S	dicluster	domain
Fer4_4	PF12800.7	gi|345005794|ref|YP_004808647.1|	-	4.3	8.1	10.7	0.74	10.5	2.0	2.5	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_6	PF12837.7	gi|345005794|ref|YP_004808647.1|	-	4.4	7.5	12.4	0.62	10.2	3.7	2.5	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Aminotran_1_2	PF00155.21	gi|345005795|ref|YP_004808648.1|	-	4.6e-31	108.3	0.0	5.5e-31	108.0	0.0	1.0	1	0	0	1	1	1	1	Aminotransferase	class	I	and	II
Aminotran_5	PF00266.19	gi|345005795|ref|YP_004808648.1|	-	0.0027	16.7	0.0	0.0042	16.1	0.0	1.2	1	0	0	1	1	1	1	Aminotransferase	class-V
Beta_elim_lyase	PF01212.21	gi|345005795|ref|YP_004808648.1|	-	0.051	12.8	0.0	0.078	12.2	0.0	1.3	1	0	0	1	1	1	0	Beta-eliminating	lyase
DUF4732	PF15876.5	gi|345005795|ref|YP_004808648.1|	-	0.11	12.6	0.0	0.17	11.9	0.0	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4732)
DEAD	PF00270.29	gi|345005796|ref|YP_004808649.1|	-	1.1e-22	80.7	0.0	1.7e-22	80.1	0.0	1.3	1	0	0	1	1	1	1	DEAD/DEAH	box	helicase
DUF1998	PF09369.10	gi|345005796|ref|YP_004808649.1|	-	1.3e-20	73.9	0.0	5.5e-20	71.9	0.0	2.2	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1998)
Helicase_C	PF00271.31	gi|345005796|ref|YP_004808649.1|	-	1.3e-12	48.1	0.0	2.8e-12	46.9	0.0	1.6	1	0	0	1	1	1	1	Helicase	conserved	C-terminal	domain
GrpE	PF01025.19	gi|345005797|ref|YP_004808650.1|	-	7.9e-41	139.5	1.3	1.1e-40	139.0	1.3	1.2	1	0	0	1	1	1	1	GrpE
OmpH	PF03938.14	gi|345005797|ref|YP_004808650.1|	-	0.0013	19.1	6.2	0.0018	18.6	6.2	1.3	1	0	0	1	1	1	1	Outer	membrane	protein	(OmpH-like)
CENP-Q	PF13094.6	gi|345005797|ref|YP_004808650.1|	-	0.002	18.3	12.1	0.0038	17.4	12.0	1.5	1	1	0	1	1	1	1	CENP-Q,	a	CENPA-CAD	centromere	complex	subunit
Fez1	PF06818.15	gi|345005797|ref|YP_004808650.1|	-	0.0037	17.7	3.2	0.0048	17.4	3.2	1.2	1	0	0	1	1	1	1	Fez1
UPF0242	PF06785.11	gi|345005797|ref|YP_004808650.1|	-	0.0046	17.1	3.3	0.0056	16.8	3.3	1.2	1	0	0	1	1	1	1	Uncharacterised	protein	family	(UPF0242)	N-terminus
Exonuc_VII_L	PF02601.15	gi|345005797|ref|YP_004808650.1|	-	0.015	14.9	0.7	0.015	14.9	0.7	1.1	1	0	0	1	1	1	0	Exonuclease	VII,	large	subunit
FAM76	PF16046.5	gi|345005797|ref|YP_004808650.1|	-	0.038	13.4	2.4	0.047	13.1	2.4	1.1	1	0	0	1	1	1	0	FAM76	protein
DUF16	PF01519.16	gi|345005797|ref|YP_004808650.1|	-	0.056	13.9	1.6	0.091	13.3	1.6	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	DUF16
VitD-bind_III	PF09164.10	gi|345005797|ref|YP_004808650.1|	-	0.086	12.8	0.5	0.17	11.9	0.5	1.4	1	0	0	1	1	1	0	Vitamin	D	binding	protein,	domain	III
Spc7	PF08317.11	gi|345005797|ref|YP_004808650.1|	-	0.092	11.6	5.8	0.11	11.3	5.8	1.2	1	0	0	1	1	1	0	Spc7	kinetochore	protein
TBCA	PF02970.16	gi|345005797|ref|YP_004808650.1|	-	0.11	12.9	6.4	0.17	12.2	5.9	1.6	1	1	0	1	1	1	0	Tubulin	binding	cofactor	A
DUF4407	PF14362.6	gi|345005797|ref|YP_004808650.1|	-	3.3	7.0	7.9	4.1	6.7	7.9	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4407)
HSP70	PF00012.20	gi|345005798|ref|YP_004808651.1|	-	1.3e-237	789.8	18.6	4.4e-207	689.0	15.0	2.0	1	1	1	2	2	2	2	Hsp70	protein
MreB_Mbl	PF06723.13	gi|345005798|ref|YP_004808651.1|	-	2.3e-18	66.1	0.2	2.3e-18	66.1	0.2	2.3	2	0	0	2	2	2	1	MreB/Mbl	protein
StbA	PF06406.11	gi|345005798|ref|YP_004808651.1|	-	0.023	13.9	1.6	0.035	13.3	0.0	2.1	3	0	0	3	3	3	0	StbA	protein
DUF812	PF05667.11	gi|345005798|ref|YP_004808651.1|	-	0.046	12.6	9.3	0.081	11.8	9.3	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF812)
PhyH	PF05721.13	gi|345005798|ref|YP_004808651.1|	-	0.84	9.8	3.7	1.9	8.7	1.3	2.3	2	0	0	2	2	2	0	Phytanoyl-CoA	dioxygenase	(PhyH)
TMP_2	PF06791.13	gi|345005798|ref|YP_004808651.1|	-	1	9.0	6.0	1.2	8.8	2.9	2.3	2	0	0	2	2	2	0	Prophage	tail	length	tape	measure	protein
Fib_alpha	PF08702.10	gi|345005798|ref|YP_004808651.1|	-	1.8	8.8	7.5	5	7.3	7.5	1.7	1	0	0	1	1	1	0	Fibrinogen	alpha/beta	chain	family
MukF_M	PF17192.4	gi|345005798|ref|YP_004808651.1|	-	7	6.4	10.2	3.3	7.4	7.0	2.0	2	0	0	2	2	2	0	MukF	middle	domain
DnaJ_C	PF01556.18	gi|345005799|ref|YP_004808652.1|	-	9.6e-42	142.6	0.0	1.3e-41	142.2	0.0	1.2	1	0	0	1	1	1	1	DnaJ	C	terminal	domain
DnaJ	PF00226.31	gi|345005799|ref|YP_004808652.1|	-	1.4e-22	79.6	3.8	1.4e-22	79.6	3.8	1.8	2	0	0	2	2	2	1	DnaJ	domain
DnaJ_CXXCXGXG	PF00684.19	gi|345005799|ref|YP_004808652.1|	-	3.5e-12	46.5	18.5	7.2e-12	45.5	18.5	1.6	1	0	0	1	1	1	1	DnaJ	central	domain
Anti-TRAP	PF15777.5	gi|345005799|ref|YP_004808652.1|	-	0.0014	18.6	17.7	0.043	13.8	6.5	2.5	1	1	1	2	2	2	2	Tryptophan	RNA-binding	attenuator	protein	inhibitory	protein
DUF5351	PF17302.2	gi|345005799|ref|YP_004808652.1|	-	0.038	14.2	25.1	0.3	11.3	0.6	4.5	4	0	0	4	4	4	0	Family	of	unknown	function	(DUF5351)
RPT	PF13446.6	gi|345005799|ref|YP_004808652.1|	-	0.061	13.3	0.2	0.13	12.2	0.2	1.5	1	0	0	1	1	1	0	A	repeated	domain	in	UCH-protein
zf-CHY	PF05495.12	gi|345005799|ref|YP_004808652.1|	-	0.85	10.2	3.5	0.6	10.6	1.7	1.6	1	1	0	1	1	1	0	CHY	zinc	finger
TackOD1	PF18551.1	gi|345005799|ref|YP_004808652.1|	-	1.3	8.7	5.8	9.7	5.8	1.5	2.3	1	1	0	2	2	2	0	Thaumarchaeal	output	domain	1
HypA	PF01155.19	gi|345005799|ref|YP_004808652.1|	-	1.5	8.8	12.7	3.1	7.9	2.0	2.3	1	1	1	2	2	2	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
DZR	PF12773.7	gi|345005799|ref|YP_004808652.1|	-	6.2	6.9	12.2	53	4.0	12.2	2.1	1	1	0	1	1	1	0	Double	zinc	ribbon
AMP-binding	PF00501.28	gi|345005800|ref|YP_004808653.1|	-	2.3e-07	29.8	0.0	6.1e-07	28.4	0.0	1.6	1	1	1	2	2	2	1	AMP-binding	enzyme
AMP-binding	PF00501.28	gi|345005801|ref|YP_004808654.1|	-	2.6e-75	253.6	0.0	3.6e-75	253.2	0.0	1.1	1	0	0	1	1	1	1	AMP-binding	enzyme
AMP-binding_C	PF13193.6	gi|345005801|ref|YP_004808654.1|	-	4.8e-22	78.7	0.1	8.7e-22	77.9	0.1	1.5	1	0	0	1	1	1	1	AMP-binding	enzyme	C-terminal	domain
ACAS_N	PF16177.5	gi|345005801|ref|YP_004808654.1|	-	1.9e-09	37.3	0.1	1.9e-09	37.3	0.1	3.4	4	0	0	4	4	4	1	Acetyl-coenzyme	A	synthetase	N-terminus
Acetyltransf_3	PF13302.7	gi|345005802|ref|YP_004808655.1|	-	2.7e-08	34.6	0.0	3.4e-08	34.3	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
FR47	PF08445.10	gi|345005802|ref|YP_004808655.1|	-	0.0055	16.7	0.0	0.0081	16.1	0.0	1.3	1	0	0	1	1	1	1	FR47-like	protein
DNA_topoisoIV	PF00521.20	gi|345005803|ref|YP_004808656.1|	-	8.6e-152	505.9	0.0	1.2e-151	505.5	0.0	1.2	1	0	0	1	1	1	1	DNA	gyrase/topoisomerase	IV,	subunit	A
DNA_gyraseA_C	PF03989.13	gi|345005803|ref|YP_004808656.1|	-	1.3e-73	242.3	8.5	3.2e-12	45.7	0.1	6.4	6	0	0	6	6	6	6	DNA	gyrase	C-terminal	domain,	beta-propeller
DNA_gyraseB	PF00204.25	gi|345005804|ref|YP_004808657.1|	-	1.2e-57	194.2	0.5	1.2e-57	194.2	0.5	2.5	2	0	0	2	2	2	1	DNA	gyrase	B
DNA_gyraseB_C	PF00986.21	gi|345005804|ref|YP_004808657.1|	-	2.5e-29	101.2	0.0	7e-29	99.8	0.0	1.8	1	0	0	1	1	1	1	DNA	gyrase	B	subunit,	carboxyl	terminus
HATPase_c	PF02518.26	gi|345005804|ref|YP_004808657.1|	-	1.3e-24	86.8	0.2	5.6e-24	84.8	0.0	2.2	2	0	0	2	2	2	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
Intein_splicing	PF14890.6	gi|345005804|ref|YP_004808657.1|	-	1.1e-15	57.7	1.0	2.1e-15	56.9	1.0	1.5	1	0	0	1	1	1	1	Intein	splicing	domain
Toprim	PF01751.22	gi|345005804|ref|YP_004808657.1|	-	1e-13	51.4	0.4	8.9e-13	48.4	0.0	2.7	3	0	0	3	3	3	1	Toprim	domain
HATPase_c_3	PF13589.6	gi|345005804|ref|YP_004808657.1|	-	0.00035	20.4	0.0	0.00094	19.0	0.0	1.7	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HNH_3	PF13392.6	gi|345005804|ref|YP_004808657.1|	-	0.00055	19.6	2.5	0.0011	18.6	2.5	1.5	1	0	0	1	1	1	1	HNH	endonuclease
Hint	PF01079.20	gi|345005804|ref|YP_004808657.1|	-	0.041	13.4	0.0	0.13	11.8	0.0	1.7	1	1	0	1	1	1	0	Hint	module
Ntox16	PF15523.6	gi|345005804|ref|YP_004808657.1|	-	0.22	11.8	1.1	1.3	9.3	0.1	2.8	3	0	0	3	3	3	0	Novel	toxin	16
DUF445	PF04286.12	gi|345005804|ref|YP_004808657.1|	-	1.1	8.9	8.0	2.9	7.6	8.0	1.8	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF445)
MHB	PF16525.5	gi|345005804|ref|YP_004808657.1|	-	9.3	6.6	6.8	15	5.9	0.1	3.0	3	0	0	3	3	3	0	Haemophore,	haem-binding
Topo-VIb_trans	PF09239.11	gi|345005805|ref|YP_004808658.1|	-	5.5e-60	201.8	0.0	1.1e-59	200.9	0.0	1.5	1	0	0	1	1	1	1	Topoisomerase	VI	B	subunit,	transducer
Top6b_C	PF18000.1	gi|345005805|ref|YP_004808658.1|	-	2e-34	118.2	0.6	5.7e-34	116.7	0.4	2.0	2	0	0	2	2	2	1	Type	2	DNA	topoisomerase	6	subunit	B	C-terminal	domain
Intein_splicing	PF14890.6	gi|345005805|ref|YP_004808658.1|	-	7.9e-17	61.5	0.0	1.9e-16	60.2	0.0	1.7	1	0	0	1	1	1	1	Intein	splicing	domain
HATPase_c	PF02518.26	gi|345005805|ref|YP_004808658.1|	-	1e-11	45.3	0.0	3.6e-10	40.3	0.0	3.1	3	0	0	3	3	3	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HATPase_c_3	PF13589.6	gi|345005805|ref|YP_004808658.1|	-	1.7e-08	34.4	0.0	2.4e-05	24.2	0.0	2.6	2	0	0	2	2	2	2	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
LAGLIDADG_3	PF14528.6	gi|345005805|ref|YP_004808658.1|	-	7.9e-05	22.9	0.0	0.00029	21.1	0.0	2.0	1	0	0	1	1	1	1	LAGLIDADG-like	domain
Hint	PF01079.20	gi|345005805|ref|YP_004808658.1|	-	0.072	12.6	0.0	0.15	11.6	0.0	1.4	1	0	0	1	1	1	0	Hint	module
TP6A_N	PF04406.14	gi|345005806|ref|YP_004808659.1|	-	1.2e-14	54.0	0.1	2e-14	53.3	0.1	1.4	1	0	0	1	1	1	1	Type	IIB	DNA	topoisomerase
Beta-lactamase	PF00144.24	gi|345005807|ref|YP_004808660.1|	-	6.9e-12	45.2	0.0	1.3e-11	44.3	0.0	1.4	1	1	0	1	1	1	1	Beta-lactamase
PNP_UDP_1	PF01048.20	gi|345005808|ref|YP_004808661.1|	-	9.6e-44	149.4	3.1	1.2e-43	149.1	3.1	1.0	1	0	0	1	1	1	1	Phosphorylase	superfamily
Pyr_redox_2	PF07992.14	gi|345005809|ref|YP_004808662.1|	-	2.4e-34	118.9	0.4	2.9e-34	118.6	0.4	1.1	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox	PF00070.27	gi|345005809|ref|YP_004808662.1|	-	1.7e-07	31.7	0.9	2.7e-05	24.6	0.0	2.5	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_binding_9	PF13454.6	gi|345005809|ref|YP_004808662.1|	-	0.00078	19.5	0.5	1.6	8.7	0.0	3.5	4	0	0	4	4	4	2	FAD-NAD(P)-binding
AlaDh_PNT_C	PF01262.21	gi|345005809|ref|YP_004808662.1|	-	0.032	13.5	0.4	2.1	7.6	0.0	2.3	2	0	0	2	2	2	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
Pyr_redox_3	PF13738.6	gi|345005809|ref|YP_004808662.1|	-	0.098	11.9	0.1	0.2	10.9	0.0	1.5	2	0	0	2	2	2	0	Pyridine	nucleotide-disulphide	oxidoreductase
K_oxygenase	PF13434.6	gi|345005809|ref|YP_004808662.1|	-	0.24	10.5	0.1	4.6	6.3	0.1	2.1	2	0	0	2	2	2	0	L-lysine	6-monooxygenase	(NADPH-requiring)
Arginase	PF00491.21	gi|345005810|ref|YP_004808663.1|	-	6.6e-74	248.9	1.3	7.6e-74	248.7	1.3	1.0	1	0	0	1	1	1	1	Arginase	family
Creatininase	PF02633.14	gi|345005811|ref|YP_004808664.1|	-	9.2e-63	211.9	3.4	1e-62	211.7	3.4	1.0	1	0	0	1	1	1	1	Creatinine	amidohydrolase
M20_dimer	PF07687.14	gi|345005812|ref|YP_004808665.1|	-	1e-07	31.8	0.0	3.2e-07	30.3	0.0	1.8	1	0	0	1	1	1	1	Peptidase	dimerisation	domain
Cytidylate_kin2	PF13189.6	gi|345005813|ref|YP_004808666.1|	-	0.023	14.8	0.0	0.03	14.4	0.0	1.1	1	0	0	1	1	1	0	Cytidylate	kinase-like	family
Phage_integrase	PF00589.22	gi|345005814|ref|YP_004808667.1|	-	1.4e-18	67.3	0.2	7.6e-18	64.9	0.2	1.9	1	1	0	1	1	1	1	Phage	integrase	family
Phage_int_SAM_1	PF02899.17	gi|345005814|ref|YP_004808667.1|	-	2e-06	28.0	0.0	6.9e-06	26.3	0.0	1.9	2	0	0	2	2	2	1	Phage	integrase,	N-terminal	SAM-like	domain
Phage_int_SAM_4	PF13495.6	gi|345005814|ref|YP_004808667.1|	-	2.1e-05	24.9	0.1	0.0003	21.2	0.0	2.6	3	1	1	4	4	4	2	Phage	integrase,	N-terminal	SAM-like	domain
Phage_integr_3	PF16795.5	gi|345005814|ref|YP_004808667.1|	-	0.058	13.3	0.0	0.16	11.8	0.0	1.7	2	0	0	2	2	2	0	Archaeal	phage	integrase
DUF4880	PF16220.5	gi|345005814|ref|YP_004808667.1|	-	0.068	13.1	2.6	0.94	9.4	0.1	3.0	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF4880)
PALP	PF00291.25	gi|345005815|ref|YP_004808668.1|	-	4e-82	275.9	10.7	4.9e-82	275.7	10.7	1.1	1	0	0	1	1	1	1	Pyridoxal-phosphate	dependent	enzyme
ACT	PF01842.25	gi|345005815|ref|YP_004808668.1|	-	3.8e-09	36.2	0.5	1e-08	34.8	0.5	1.8	1	0	0	1	1	1	1	ACT	domain
ACT_4	PF13291.6	gi|345005815|ref|YP_004808668.1|	-	1.5e-06	28.7	0.2	5.3e-06	26.9	0.0	2.1	2	0	0	2	2	2	1	ACT	domain
Phage_P2_GpU	PF06995.11	gi|345005815|ref|YP_004808668.1|	-	0.031	13.9	0.0	3.6	7.2	0.0	2.4	2	0	0	2	2	2	0	Phage	P2	GpU
DXP_reductoisom	PF02670.16	gi|345005815|ref|YP_004808668.1|	-	1.2	9.9	6.6	14	6.4	0.1	3.3	2	1	1	3	3	3	0	1-deoxy-D-xylulose	5-phosphate	reductoisomerase
ABC_tran	PF00005.27	gi|345005816|ref|YP_004808669.1|	-	1.6e-33	116.1	0.0	5.2e-33	114.5	0.0	1.8	2	1	0	2	2	2	1	ABC	transporter
oligo_HPY	PF08352.12	gi|345005816|ref|YP_004808669.1|	-	1.7e-14	54.0	0.0	3.3e-14	53.1	0.0	1.4	1	0	0	1	1	1	1	Oligopeptide/dipeptide	transporter,	C-terminal	region
AAA_21	PF13304.6	gi|345005816|ref|YP_004808669.1|	-	6.2e-07	29.5	0.7	0.00056	19.8	0.2	2.2	1	1	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_22	PF13401.6	gi|345005816|ref|YP_004808669.1|	-	9.8e-05	22.6	0.0	0.00041	20.6	0.0	2.0	1	1	0	1	1	1	1	AAA	domain
SMC_N	PF02463.19	gi|345005816|ref|YP_004808669.1|	-	0.0026	17.2	0.0	0.0057	16.1	0.0	1.5	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_16	PF13191.6	gi|345005816|ref|YP_004808669.1|	-	0.014	15.8	1.6	0.017	15.5	0.2	1.9	2	1	0	2	2	2	0	AAA	ATPase	domain
AAA	PF00004.29	gi|345005816|ref|YP_004808669.1|	-	0.016	15.7	0.0	0.036	14.5	0.0	1.8	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
ATP-synt_ab	PF00006.25	gi|345005816|ref|YP_004808669.1|	-	0.026	14.2	0.0	0.029	14.0	0.0	1.2	1	0	0	1	1	1	0	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
NB-ARC	PF00931.22	gi|345005816|ref|YP_004808669.1|	-	0.035	13.3	0.1	0.064	12.4	0.1	1.3	1	0	0	1	1	1	0	NB-ARC	domain
RsgA_GTPase	PF03193.16	gi|345005816|ref|YP_004808669.1|	-	0.037	13.9	0.1	0.069	13.1	0.1	1.3	1	0	0	1	1	1	0	RsgA	GTPase
Sigma54_activat	PF00158.26	gi|345005816|ref|YP_004808669.1|	-	0.047	13.4	0.1	8	6.1	0.0	2.3	2	0	0	2	2	2	0	Sigma-54	interaction	domain
AAA_13	PF13166.6	gi|345005816|ref|YP_004808669.1|	-	0.12	11.0	0.0	4	5.9	0.0	2.1	2	0	0	2	2	2	0	AAA	domain
Mg_chelatase	PF01078.21	gi|345005816|ref|YP_004808669.1|	-	0.14	11.5	0.0	0.27	10.6	0.0	1.4	1	0	0	1	1	1	0	Magnesium	chelatase,	subunit	ChlI
AAA_5	PF07728.14	gi|345005816|ref|YP_004808669.1|	-	0.16	12.0	0.1	1.6	8.8	0.1	2.3	2	0	0	2	2	2	0	AAA	domain	(dynein-related	subfamily)
ABC_tran	PF00005.27	gi|345005817|ref|YP_004808670.1|	-	2e-27	96.4	0.0	2.9e-27	95.9	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
oligo_HPY	PF08352.12	gi|345005817|ref|YP_004808670.1|	-	8.3e-19	67.9	0.2	1.4e-18	67.1	0.2	1.4	1	0	0	1	1	1	1	Oligopeptide/dipeptide	transporter,	C-terminal	region
AAA_21	PF13304.6	gi|345005817|ref|YP_004808670.1|	-	1.4e-08	34.9	0.4	1.6e-07	31.4	0.0	2.0	1	1	1	2	2	2	1	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA	PF00004.29	gi|345005817|ref|YP_004808670.1|	-	0.00023	21.6	0.0	0.045	14.2	0.0	2.3	2	0	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
SMC_N	PF02463.19	gi|345005817|ref|YP_004808670.1|	-	0.00045	19.7	0.0	0.00096	18.6	0.0	1.5	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_22	PF13401.6	gi|345005817|ref|YP_004808670.1|	-	0.0014	19.0	0.1	0.013	15.8	0.1	2.1	1	1	0	1	1	1	1	AAA	domain
AAA_16	PF13191.6	gi|345005817|ref|YP_004808670.1|	-	0.033	14.6	0.6	0.066	13.6	0.6	1.6	1	1	0	1	1	1	0	AAA	ATPase	domain
AAA_29	PF13555.6	gi|345005817|ref|YP_004808670.1|	-	0.073	12.8	0.1	0.13	12.0	0.1	1.3	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
BPD_transp_1	PF00528.22	gi|345005818|ref|YP_004808671.1|	-	4.2e-19	69.0	4.9	4.2e-19	69.0	4.9	3.0	2	1	2	4	4	4	1	Binding-protein-dependent	transport	system	inner	membrane	component
OppC_N	PF12911.7	gi|345005818|ref|YP_004808671.1|	-	0.00045	20.1	0.0	0.00045	20.1	0.0	3.4	3	1	0	3	3	3	1	N-terminal	TM	domain	of	oligopeptide	transport	permease	C
BPD_transp_1	PF00528.22	gi|345005819|ref|YP_004808672.1|	-	4.3e-33	114.6	9.9	4.3e-33	114.6	9.9	2.1	2	0	0	2	2	2	2	Binding-protein-dependent	transport	system	inner	membrane	component
DUF3593	PF12159.8	gi|345005819|ref|YP_004808672.1|	-	0.32	11.1	0.1	0.32	11.1	0.1	2.2	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3593)
SBP_bac_5	PF00496.22	gi|345005820|ref|YP_004808673.1|	-	1.2e-62	212.1	3.3	1.7e-62	211.5	3.3	1.2	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	proteins,	family	5	Middle
TAT_signal	PF10518.9	gi|345005820|ref|YP_004808673.1|	-	0.0066	16.2	3.9	0.015	15.1	3.9	1.7	1	0	0	1	1	1	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
TPPII_N	PF12583.8	gi|345005820|ref|YP_004808673.1|	-	1.4	9.5	3.9	1	9.9	2.0	1.8	2	0	0	2	2	2	0	Tripeptidyl	peptidase	II	N	terminal
Metallophos	PF00149.28	gi|345005821|ref|YP_004808674.1|	-	4.4e-15	56.7	1.7	5.6e-15	56.4	1.7	1.1	1	0	0	1	1	1	1	Calcineurin-like	phosphoesterase
Metallophos_2	PF12850.7	gi|345005821|ref|YP_004808674.1|	-	3e-10	40.5	2.0	2.4e-09	37.6	2.0	2.0	1	1	0	1	1	1	1	Calcineurin-like	phosphoesterase	superfamily	domain
tRNA_Me_trans	PF03054.16	gi|345005821|ref|YP_004808674.1|	-	0.23	10.2	0.0	0.34	9.7	0.0	1.1	1	0	0	1	1	1	0	tRNA	methyl	transferase
PfkB	PF00294.24	gi|345005822|ref|YP_004808675.1|	-	2.7e-40	138.6	1.4	3.2e-40	138.3	1.4	1.0	1	0	0	1	1	1	1	pfkB	family	carbohydrate	kinase
BtpA	PF03437.15	gi|345005823|ref|YP_004808676.1|	-	5.1e-79	265.3	0.6	5.7e-79	265.1	0.6	1.0	1	0	0	1	1	1	1	BtpA	family
Trp_syntA	PF00290.20	gi|345005823|ref|YP_004808676.1|	-	0.0019	17.1	0.2	0.0036	16.2	0.2	1.5	1	0	0	1	1	1	1	Tryptophan	synthase	alpha	chain
HisG	PF01634.18	gi|345005825|ref|YP_004808678.1|	-	0.009	16.0	0.0	0.017	15.1	0.0	1.4	1	1	0	1	1	1	1	ATP	phosphoribosyltransferase
DUF3273	PF11677.8	gi|345005826|ref|YP_004808679.1|	-	0.038	13.3	0.3	0.038	13.3	0.3	1.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3273)
Lactamase_B_2	PF12706.7	gi|345005829|ref|YP_004808682.1|	-	1.5e-14	54.0	0.2	2e-14	53.6	0.2	1.2	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
Lactamase_B_3	PF13483.6	gi|345005829|ref|YP_004808682.1|	-	2.4e-11	43.8	0.0	3.3e-11	43.3	0.0	1.2	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
Lactamase_B	PF00753.27	gi|345005829|ref|YP_004808682.1|	-	0.0048	16.9	6.3	0.019	15.0	6.3	2.0	1	1	0	1	1	1	1	Metallo-beta-lactamase	superfamily
MS_channel	PF00924.18	gi|345005831|ref|YP_004808684.1|	-	1e-24	87.2	2.4	1e-24	87.2	2.4	2.2	2	1	0	2	2	2	1	Mechanosensitive	ion	channel
TMEM37	PF15108.6	gi|345005831|ref|YP_004808684.1|	-	0.04	13.8	1.0	0.085	12.7	1.0	1.5	1	0	0	1	1	1	0	Voltage-dependent	calcium	channel	gamma-like	subunit	protein	family
GldM_N	PF12081.8	gi|345005831|ref|YP_004808684.1|	-	0.2	11.7	0.0	0.29	11.2	0.0	1.2	1	0	0	1	1	1	0	GldM	N-terminal	domain
PTS_EIIC_2	PF13303.6	gi|345005831|ref|YP_004808684.1|	-	4.1	6.3	9.9	0.34	9.9	2.9	2.0	2	0	0	2	2	2	0	Phosphotransferase	system,	EIIC
HhH-GPD	PF00730.25	gi|345005832|ref|YP_004808685.1|	-	5.3e-14	52.6	0.0	7.5e-14	52.1	0.0	1.2	1	0	0	1	1	1	1	HhH-GPD	superfamily	base	excision	DNA	repair	protein
OGG_N	PF07934.12	gi|345005832|ref|YP_004808685.1|	-	1e-09	38.5	0.0	3.2e-09	36.9	0.0	1.8	1	1	0	1	1	1	1	8-oxoguanine	DNA	glycosylase,	N-terminal	domain
AAA_23	PF13476.6	gi|345005834|ref|YP_004808687.1|	-	3.7e-07	30.9	12.2	3.7e-07	30.9	12.2	4.7	2	2	1	3	3	3	1	AAA	domain
AAA_21	PF13304.6	gi|345005834|ref|YP_004808687.1|	-	1.6e-05	24.9	0.0	0.001	19.0	0.0	2.7	2	1	0	2	2	2	1	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_15	PF13175.6	gi|345005834|ref|YP_004808687.1|	-	2.6e-05	24.1	0.1	0.076	12.7	0.1	3.2	2	2	0	2	2	2	2	AAA	ATPase	domain
AAA_27	PF13514.6	gi|345005834|ref|YP_004808687.1|	-	0.0016	18.1	0.7	0.0016	18.1	0.7	3.6	3	1	0	3	3	3	1	AAA	domain
AAA_33	PF13671.6	gi|345005834|ref|YP_004808687.1|	-	0.032	14.4	1.5	0.48	10.6	0.0	3.7	4	0	0	4	4	4	0	AAA	domain
HAMP	PF00672.25	gi|345005834|ref|YP_004808687.1|	-	0.13	12.7	1.4	4.4	7.8	0.5	3.1	2	0	0	2	2	2	0	HAMP	domain
Aldedh	PF00171.22	gi|345005834|ref|YP_004808687.1|	-	0.24	9.8	2.1	0.62	8.5	2.1	1.6	1	0	0	1	1	1	0	Aldehyde	dehydrogenase	family
DUF4391	PF14335.6	gi|345005834|ref|YP_004808687.1|	-	0.57	9.8	11.4	0.013	15.3	2.1	2.8	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF4391)
SMC_N	PF02463.19	gi|345005834|ref|YP_004808687.1|	-	0.66	9.4	0.0	0.66	9.4	0.0	2.4	2	1	0	2	2	1	0	RecF/RecN/SMC	N	terminal	domain
AAA_22	PF13401.6	gi|345005834|ref|YP_004808687.1|	-	2.8	8.2	10.0	7.6	6.8	0.0	5.3	4	2	2	6	6	6	0	AAA	domain
Csm2_III-A	PF03750.13	gi|345005834|ref|YP_004808687.1|	-	2.8	8.8	5.8	1.4	9.8	2.6	2.3	2	0	0	2	2	2	0	Csm2	Type	III-A
Metallophos_2	PF12850.7	gi|345005835|ref|YP_004808688.1|	-	5.2e-09	36.5	4.1	1.4e-08	35.1	4.1	1.7	1	1	0	1	1	1	1	Calcineurin-like	phosphoesterase	superfamily	domain
Metallophos	PF00149.28	gi|345005835|ref|YP_004808688.1|	-	2e-08	35.0	7.2	6.9e-08	33.2	7.2	1.8	1	1	0	1	1	1	1	Calcineurin-like	phosphoesterase
CoatB	PF10389.9	gi|345005835|ref|YP_004808688.1|	-	0.037	13.9	2.0	0.62	9.9	0.7	2.3	2	0	0	2	2	2	0	Bacteriophage	coat	protein	B
Peptidase_S9	PF00326.21	gi|345005836|ref|YP_004808689.1|	-	1e-48	165.6	0.1	1.8e-48	164.8	0.1	1.4	1	0	0	1	1	1	1	Prolyl	oligopeptidase	family
DLH	PF01738.18	gi|345005836|ref|YP_004808689.1|	-	5.8e-09	35.8	0.1	1.3e-08	34.7	0.1	1.5	1	0	0	1	1	1	1	Dienelactone	hydrolase	family
Hydrolase_4	PF12146.8	gi|345005836|ref|YP_004808689.1|	-	1.4e-05	24.5	0.5	0.0078	15.5	0.0	2.2	2	0	0	2	2	2	2	Serine	aminopeptidase,	S33
Peptidase_S15	PF02129.18	gi|345005836|ref|YP_004808689.1|	-	3.3e-05	23.6	0.2	0.072	12.7	0.6	2.3	1	1	1	2	2	2	2	X-Pro	dipeptidyl-peptidase	(S15	family)
Esterase_phd	PF10503.9	gi|345005836|ref|YP_004808689.1|	-	7.3e-05	22.4	5.8	0.00028	20.5	5.8	1.9	1	1	0	1	1	1	1	Esterase	PHB	depolymerase
Abhydrolase_1	PF00561.20	gi|345005836|ref|YP_004808689.1|	-	0.00038	20.2	0.1	0.086	12.5	0.1	2.2	2	0	0	2	2	2	2	alpha/beta	hydrolase	fold
PD40	PF07676.12	gi|345005836|ref|YP_004808689.1|	-	0.002	18.0	0.2	1.5	8.9	0.0	4.7	6	0	0	6	6	6	1	WD40-like	Beta	Propeller	Repeat
COesterase	PF00135.28	gi|345005836|ref|YP_004808689.1|	-	0.008	15.1	0.0	0.011	14.6	0.0	1.1	1	0	0	1	1	1	1	Carboxylesterase	family
Abhydrolase_3	PF07859.13	gi|345005836|ref|YP_004808689.1|	-	0.03	14.2	0.9	0.12	12.2	0.9	1.9	1	1	0	1	1	1	0	alpha/beta	hydrolase	fold
Abhydrolase_4	PF08386.10	gi|345005836|ref|YP_004808689.1|	-	0.031	14.4	0.0	0.074	13.2	0.0	1.6	1	0	0	1	1	1	0	TAP-like	protein
Esterase	PF00756.20	gi|345005836|ref|YP_004808689.1|	-	0.097	12.3	0.0	0.31	10.6	0.0	1.9	2	0	0	2	2	2	0	Putative	esterase
AXE1	PF05448.12	gi|345005836|ref|YP_004808689.1|	-	0.27	9.9	0.2	1.2	7.8	0.2	1.9	1	1	0	1	1	1	0	Acetyl	xylan	esterase	(AXE1)
Iron_transport	PF10634.9	gi|345005837|ref|YP_004808690.1|	-	7.6e-07	29.4	0.0	2.3e-05	24.6	0.0	2.6	3	0	0	3	3	3	1	Fe2+	transport	protein
TAT_signal	PF10518.9	gi|345005837|ref|YP_004808690.1|	-	0.0027	17.5	5.0	0.014	15.3	5.0	2.3	1	0	0	1	1	1	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
TAT_signal	PF10518.9	gi|345005838|ref|YP_004808691.1|	-	0.036	13.9	0.7	0.036	13.9	0.7	1.7	2	0	0	2	2	2	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
MarR_2	PF12802.7	gi|345005839|ref|YP_004808692.1|	-	4.2e-16	58.6	3.6	3.6e-09	36.4	0.5	2.7	2	1	1	3	3	3	2	MarR	family
HTH_24	PF13412.6	gi|345005839|ref|YP_004808692.1|	-	1.6e-12	46.7	0.2	7.1e-06	25.5	0.3	2.3	2	0	0	2	2	2	2	Winged	helix-turn-helix	DNA-binding
HTH_20	PF12840.7	gi|345005839|ref|YP_004808692.1|	-	9.5e-12	44.8	9.0	8.9e-07	28.9	3.8	2.3	2	0	0	2	2	2	2	Helix-turn-helix	domain
HTH_5	PF01022.20	gi|345005839|ref|YP_004808692.1|	-	1.2e-11	44.3	1.0	8e-08	32.0	0.4	2.2	2	0	0	2	2	2	2	Bacterial	regulatory	protein,	arsR	family
MarR	PF01047.22	gi|345005839|ref|YP_004808692.1|	-	2.9e-06	27.1	0.1	0.0012	18.7	0.1	2.3	2	0	0	2	2	2	2	MarR	family
TrmB	PF01978.19	gi|345005839|ref|YP_004808692.1|	-	2.5e-05	24.1	0.0	0.01	15.7	0.0	2.2	2	0	0	2	2	2	2	Sugar-specific	transcriptional	regulator	TrmB
HTH_10	PF04967.12	gi|345005839|ref|YP_004808692.1|	-	4e-05	23.3	0.5	0.089	12.6	0.0	3.2	3	0	0	3	3	3	1	HTH	DNA	binding	domain
RP-C	PF03428.13	gi|345005839|ref|YP_004808692.1|	-	0.00016	21.4	0.1	0.052	13.2	0.0	2.4	2	0	0	2	2	2	2	Replication	protein	C	N-terminal	domain
HTH_27	PF13463.6	gi|345005839|ref|YP_004808692.1|	-	0.0012	19.3	1.3	0.035	14.6	0.2	2.2	2	0	0	2	2	2	1	Winged	helix	DNA-binding	domain
HTH_28	PF13518.6	gi|345005839|ref|YP_004808692.1|	-	0.0012	18.9	1.6	1.3	9.2	0.1	2.5	2	0	0	2	2	2	2	Helix-turn-helix	domain
Rrf2	PF02082.20	gi|345005839|ref|YP_004808692.1|	-	0.0015	18.8	0.1	0.0074	16.6	0.0	1.9	2	0	0	2	2	2	1	Transcriptional	regulator
HTH_IclR	PF09339.10	gi|345005839|ref|YP_004808692.1|	-	0.0039	17.0	6.9	0.027	14.3	1.2	2.7	3	0	0	3	3	3	1	IclR	helix-turn-helix	domain
HTH_34	PF13601.6	gi|345005839|ref|YP_004808692.1|	-	0.0049	17.0	0.0	0.1	12.8	0.0	2.1	2	0	0	2	2	2	1	Winged	helix	DNA-binding	domain
HTH_41	PF14502.6	gi|345005839|ref|YP_004808692.1|	-	0.12	12.1	0.0	0.28	10.9	0.0	1.5	1	0	0	1	1	1	0	Helix-turn-helix	domain
DUF3392	PF11872.8	gi|345005840|ref|YP_004808693.1|	-	0.012	15.9	1.5	0.015	15.5	1.5	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3392)
DUF2569	PF10754.9	gi|345005840|ref|YP_004808693.1|	-	0.057	13.9	1.0	0.072	13.5	1.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2569)
BPD_transp_2	PF02653.16	gi|345005840|ref|YP_004808693.1|	-	0.28	10.3	10.0	0.5	9.5	10.1	1.3	1	1	0	1	1	1	0	Branched-chain	amino	acid	transport	system	/	permease	component
FAD_binding_5	PF00941.21	gi|345005841|ref|YP_004808694.1|	-	1.6e-42	145.1	0.0	2.3e-42	144.6	0.0	1.2	1	0	0	1	1	1	1	FAD	binding	domain	in	molybdopterin	dehydrogenase
CO_deh_flav_C	PF03450.17	gi|345005841|ref|YP_004808694.1|	-	1.3e-07	31.7	0.4	2.9e-07	30.6	0.4	1.7	1	0	0	1	1	1	1	CO	dehydrogenase	flavoprotein	C-terminal	domain
FAD_binding_4	PF01565.23	gi|345005841|ref|YP_004808694.1|	-	0.0032	17.2	2.2	0.099	12.4	1.4	2.6	2	1	0	2	2	2	1	FAD	binding	domain
DDE_3	PF13358.6	gi|345005842|ref|YP_004808695.1|	-	2.2e-26	92.3	0.0	3.8e-26	91.6	0.0	1.4	1	0	0	1	1	1	1	DDE	superfamily	endonuclease
HTH_32	PF13565.6	gi|345005842|ref|YP_004808695.1|	-	5.7e-15	55.7	1.1	3.1e-14	53.3	0.6	2.5	3	0	0	3	3	3	1	Homeodomain-like	domain
HTH_23	PF13384.6	gi|345005842|ref|YP_004808695.1|	-	2.3e-12	46.3	0.1	8.9e-11	41.3	0.0	2.8	2	1	0	2	2	2	1	Homeodomain-like	domain
HTH_29	PF13551.6	gi|345005842|ref|YP_004808695.1|	-	6.1e-12	45.4	0.5	1.8e-11	43.9	0.5	1.8	2	0	0	2	2	2	1	Winged	helix-turn	helix
HTH_28	PF13518.6	gi|345005842|ref|YP_004808695.1|	-	3.7e-05	23.8	0.2	0.00022	21.3	0.1	2.3	2	0	0	2	2	2	1	Helix-turn-helix	domain
Terminase_5	PF06056.12	gi|345005842|ref|YP_004808695.1|	-	0.02	14.8	0.0	0.067	13.1	0.0	1.9	1	0	0	1	1	1	0	Putative	ATPase	subunit	of	terminase	(gpP-like)
GDE_N	PF12439.8	gi|345005842|ref|YP_004808695.1|	-	0.07	12.5	0.2	0.13	11.7	0.2	1.3	1	0	0	1	1	1	0	Glycogen	debranching	enzyme	N	terminal
HTH_Tnp_Tc3_2	PF01498.18	gi|345005842|ref|YP_004808695.1|	-	0.081	13.2	0.0	0.2	11.9	0.0	1.7	1	0	0	1	1	1	0	Transposase
HATPase_c	PF02518.26	gi|345005845|ref|YP_004808698.1|	-	4.3e-17	62.6	0.1	8e-17	61.8	0.1	1.4	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HisKA	PF00512.25	gi|345005845|ref|YP_004808698.1|	-	2.6e-11	43.4	0.5	2.6e-11	43.4	0.5	2.9	3	0	0	3	3	3	1	His	Kinase	A	(phospho-acceptor)	domain
GAF	PF01590.26	gi|345005845|ref|YP_004808698.1|	-	8.6e-10	39.4	0.0	1.9e-09	38.3	0.0	1.6	1	0	0	1	1	1	1	GAF	domain
GAF_2	PF13185.6	gi|345005845|ref|YP_004808698.1|	-	1e-08	35.6	2.0	1.8e-06	28.3	0.1	3.2	3	0	0	3	3	3	1	GAF	domain
GAF_3	PF13492.6	gi|345005845|ref|YP_004808698.1|	-	2.2e-08	34.5	0.0	1.5e-07	31.8	0.0	2.3	3	0	0	3	3	3	1	GAF	domain
PAS_4	PF08448.10	gi|345005845|ref|YP_004808698.1|	-	4.2e-08	33.4	0.1	9.3e-08	32.3	0.1	1.6	1	0	0	1	1	1	1	PAS	fold
PAS	PF00989.25	gi|345005845|ref|YP_004808698.1|	-	7.1e-07	29.2	0.0	1.3e-05	25.1	0.0	2.5	2	0	0	2	2	2	1	PAS	fold
PAS_9	PF13426.7	gi|345005845|ref|YP_004808698.1|	-	0.00029	21.1	0.0	0.00071	19.8	0.0	1.7	1	0	0	1	1	1	1	PAS	domain
PAS_8	PF13188.7	gi|345005845|ref|YP_004808698.1|	-	0.0015	18.5	0.4	0.0067	16.4	0.0	2.3	2	0	0	2	2	2	1	PAS	domain
PikAIV_N	PF18605.1	gi|345005845|ref|YP_004808698.1|	-	2.4	7.8	9.0	1.7	8.3	4.8	2.3	2	0	0	2	2	2	0	Narbonolide/10-deoxymethynolide	synthase	PikA4	N-terminal	domain
PvlArgDC	PF01862.16	gi|345005847|ref|YP_004808700.1|	-	6.7e-36	123.5	0.2	8e-36	123.3	0.2	1.0	1	0	0	1	1	1	1	Pyruvoyl-dependent	arginine	decarboxylase	(PvlArgDC)
Shadoo	PF14999.6	gi|345005847|ref|YP_004808700.1|	-	8.2	6.5	10.5	0.23	11.6	2.5	2.1	2	1	1	3	3	3	0	Shadow	of	prion	protein,	neuroprotective
AAA	PF00004.29	gi|345005848|ref|YP_004808701.1|	-	1.4e-43	148.5	0.9	4e-43	147.0	0.1	2.0	2	0	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_lid_3	PF17862.1	gi|345005848|ref|YP_004808701.1|	-	1.9e-13	50.0	1.6	1.9e-13	50.0	1.6	2.1	2	0	0	2	2	1	1	AAA+	lid	domain
AAA_2	PF07724.14	gi|345005848|ref|YP_004808701.1|	-	4.6e-08	33.4	0.0	1.1e-07	32.2	0.0	1.7	1	0	0	1	1	1	1	AAA	domain	(Cdc48	subfamily)
RuvB_N	PF05496.12	gi|345005848|ref|YP_004808701.1|	-	3.5e-07	30.1	0.0	1.2e-06	28.3	0.0	1.9	2	0	0	2	2	1	1	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
AAA_16	PF13191.6	gi|345005848|ref|YP_004808701.1|	-	5e-06	27.0	3.2	0.00038	20.9	0.0	3.3	2	2	1	3	3	3	1	AAA	ATPase	domain
AAA_5	PF07728.14	gi|345005848|ref|YP_004808701.1|	-	5.2e-06	26.5	0.3	3.8e-05	23.7	0.3	2.4	1	1	0	1	1	1	1	AAA	domain	(dynein-related	subfamily)
AAA_22	PF13401.6	gi|345005848|ref|YP_004808701.1|	-	3.2e-05	24.2	1.5	0.0013	19.0	0.0	2.9	2	1	1	3	3	3	1	AAA	domain
TIP49	PF06068.13	gi|345005848|ref|YP_004808701.1|	-	0.00028	20.2	0.0	0.00064	19.0	0.0	1.6	1	0	0	1	1	1	1	TIP49	P-loop	domain
DUF815	PF05673.13	gi|345005848|ref|YP_004808701.1|	-	0.00058	19.1	0.0	0.0013	18.0	0.0	1.6	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF815)
AAA_33	PF13671.6	gi|345005848|ref|YP_004808701.1|	-	0.00081	19.6	0.1	0.0024	18.0	0.0	2.0	2	0	0	2	2	1	1	AAA	domain
DMPK_coil	PF08826.10	gi|345005848|ref|YP_004808701.1|	-	0.0013	18.7	4.8	0.0049	17.0	4.0	2.4	2	0	0	2	2	1	1	DMPK	coiled	coil	domain	like
Mg_chelatase	PF01078.21	gi|345005848|ref|YP_004808701.1|	-	0.002	17.5	0.0	0.0061	16.0	0.0	1.8	2	0	0	2	2	1	1	Magnesium	chelatase,	subunit	ChlI
Prot_ATP_ID_OB	PF16450.5	gi|345005848|ref|YP_004808701.1|	-	0.0027	17.6	0.1	0.011	15.7	0.0	2.1	2	0	0	2	2	2	1	Proteasomal	ATPase	OB	C-terminal	domain
AAA_14	PF13173.6	gi|345005848|ref|YP_004808701.1|	-	0.0031	17.6	0.0	0.0076	16.3	0.0	1.6	1	0	0	1	1	1	1	AAA	domain
NACHT	PF05729.12	gi|345005848|ref|YP_004808701.1|	-	0.0044	17.0	1.2	0.044	13.7	0.0	2.6	3	0	0	3	3	3	1	NACHT	domain
TsaE	PF02367.17	gi|345005848|ref|YP_004808701.1|	-	0.0049	16.9	0.0	0.019	15.0	0.0	1.9	2	0	0	2	2	2	1	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
IstB_IS21	PF01695.17	gi|345005848|ref|YP_004808701.1|	-	0.0056	16.4	0.1	0.022	14.5	0.0	2.0	2	0	0	2	2	2	1	IstB-like	ATP	binding	protein
AAA_18	PF13238.6	gi|345005848|ref|YP_004808701.1|	-	0.0062	17.1	0.2	0.03	14.9	0.0	2.4	2	1	0	2	2	2	1	AAA	domain
Sigma54_activat	PF00158.26	gi|345005848|ref|YP_004808701.1|	-	0.0088	15.8	0.1	0.057	13.1	0.0	2.3	2	1	0	2	2	2	1	Sigma-54	interaction	domain
AAA_17	PF13207.6	gi|345005848|ref|YP_004808701.1|	-	0.012	16.0	0.9	0.035	14.5	0.0	2.2	2	1	0	2	2	2	0	AAA	domain
NTPase_1	PF03266.15	gi|345005848|ref|YP_004808701.1|	-	0.015	15.2	0.2	0.16	11.9	0.0	2.6	2	0	0	2	2	2	0	NTPase
AAA_28	PF13521.6	gi|345005848|ref|YP_004808701.1|	-	0.016	15.5	0.0	0.016	15.5	0.0	2.5	3	0	0	3	3	2	0	AAA	domain
AAA_3	PF07726.11	gi|345005848|ref|YP_004808701.1|	-	0.019	14.8	0.0	0.044	13.6	0.0	1.8	1	0	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
AFG1_ATPase	PF03969.16	gi|345005848|ref|YP_004808701.1|	-	0.019	13.9	0.1	0.095	11.6	0.0	2.0	2	0	0	2	2	2	0	AFG1-like	ATPase
AAA_7	PF12775.7	gi|345005848|ref|YP_004808701.1|	-	0.022	14.3	0.0	0.058	12.9	0.0	1.6	2	0	0	2	2	2	0	P-loop	containing	dynein	motor	region
AAA_11	PF13086.6	gi|345005848|ref|YP_004808701.1|	-	0.022	14.6	0.6	0.11	12.2	0.0	2.1	2	0	0	2	2	2	0	AAA	domain
NB-ARC	PF00931.22	gi|345005848|ref|YP_004808701.1|	-	0.023	13.9	0.0	0.068	12.3	0.0	1.8	2	1	0	2	2	2	0	NB-ARC	domain
AAA_30	PF13604.6	gi|345005848|ref|YP_004808701.1|	-	0.023	14.4	0.2	0.084	12.6	0.2	2.0	1	1	0	1	1	1	0	AAA	domain
RNA_helicase	PF00910.22	gi|345005848|ref|YP_004808701.1|	-	0.025	15.0	0.0	0.069	13.5	0.0	1.8	2	0	0	2	2	1	0	RNA	helicase
COG6	PF06419.11	gi|345005848|ref|YP_004808701.1|	-	0.032	12.5	1.0	0.046	11.9	1.0	1.2	1	0	0	1	1	1	0	Conserved	oligomeric	complex	COG6
Torsin	PF06309.11	gi|345005848|ref|YP_004808701.1|	-	0.039	14.0	0.0	0.085	13.0	0.0	1.5	1	0	0	1	1	1	0	Torsin
CPT	PF07931.12	gi|345005848|ref|YP_004808701.1|	-	0.043	13.7	0.0	0.11	12.4	0.0	1.7	1	0	0	1	1	1	0	Chloramphenicol	phosphotransferase-like	protein
ABC_tran	PF00005.27	gi|345005848|ref|YP_004808701.1|	-	0.065	13.8	1.4	0.28	11.7	0.0	2.5	2	2	0	2	2	2	0	ABC	transporter
AAA_24	PF13479.6	gi|345005848|ref|YP_004808701.1|	-	0.07	12.8	0.1	0.22	11.2	0.1	1.8	1	1	0	1	1	1	0	AAA	domain
Atrophin-1	PF03154.15	gi|345005848|ref|YP_004808701.1|	-	0.08	11.2	0.6	0.26	9.5	0.3	1.7	2	0	0	2	2	2	0	Atrophin-1	family
Parvo_NS1	PF01057.17	gi|345005848|ref|YP_004808701.1|	-	0.15	11.1	0.1	0.34	10.0	0.0	1.5	2	0	0	2	2	2	0	Parvovirus	non-structural	protein	NS1
DUF2203	PF09969.9	gi|345005848|ref|YP_004808701.1|	-	0.33	11.7	4.2	0.19	12.5	1.5	2.0	2	0	0	2	2	1	0	Uncharacterized	conserved	protein	(DUF2203)
AAA_25	PF13481.6	gi|345005848|ref|YP_004808701.1|	-	0.37	10.3	5.8	0.72	9.4	0.1	3.3	2	1	0	3	3	3	0	AAA	domain
DUF3552	PF12072.8	gi|345005848|ref|YP_004808701.1|	-	0.39	10.1	5.7	0.77	9.1	5.7	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3552)
MRPL52	PF18699.1	gi|345005848|ref|YP_004808701.1|	-	0.41	10.9	3.0	2.9	8.1	1.6	2.4	2	0	0	2	2	2	0	Mitoribosomal	protein	mL52
BLOC1_2	PF10046.9	gi|345005848|ref|YP_004808701.1|	-	0.45	10.9	4.2	0.41	11.0	1.0	2.6	3	0	0	3	3	2	0	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
ATPase	PF06745.13	gi|345005848|ref|YP_004808701.1|	-	0.51	9.6	3.8	1.1	8.5	0.3	2.8	2	1	0	2	2	2	0	KaiC
ZapB	PF06005.12	gi|345005848|ref|YP_004808701.1|	-	2.7	8.5	6.7	1.8	9.0	4.1	2.2	2	0	0	2	2	1	0	Cell	division	protein	ZapB
Peptidase_M3	PF01432.20	gi|345005849|ref|YP_004808702.1|	-	3.9e-65	220.9	8.0	3.9e-65	220.9	8.0	1.8	2	0	0	2	2	2	1	Peptidase	family	M3
Peptidase_M3_N	PF08439.10	gi|345005849|ref|YP_004808702.1|	-	6.2e-23	80.9	1.2	6.2e-23	80.9	1.2	3.3	3	0	0	3	3	3	1	Oligopeptidase	F
DUF3091	PF11291.8	gi|345005849|ref|YP_004808702.1|	-	0.035	14.3	0.7	0.1	12.8	0.1	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3091)
Peptidase_M28	PF04389.17	gi|345005850|ref|YP_004808703.1|	-	6.6e-36	123.9	0.1	9.7e-36	123.3	0.1	1.3	1	0	0	1	1	1	1	Peptidase	family	M28
PA	PF02225.22	gi|345005850|ref|YP_004808703.1|	-	2e-11	43.8	0.1	4.3e-11	42.7	0.1	1.6	1	0	0	1	1	1	1	PA	domain
Peptidase_M20	PF01546.28	gi|345005850|ref|YP_004808703.1|	-	1.3e-07	31.5	0.3	2.1e-07	30.9	0.3	1.4	1	0	0	1	1	1	1	Peptidase	family	M20/M25/M40
Peptidase_M42	PF05343.14	gi|345005850|ref|YP_004808703.1|	-	1.6e-05	24.1	0.4	2.6e-05	23.4	0.4	1.2	1	0	0	1	1	1	1	M42	glutamyl	aminopeptidase
TrbC	PF04956.13	gi|345005851|ref|YP_004808704.1|	-	0.06	13.6	0.2	0.07	13.4	0.2	1.2	1	0	0	1	1	1	0	TrbC/VIRB2	family
DUF2892	PF11127.8	gi|345005851|ref|YP_004808704.1|	-	0.076	13.1	1.3	0.093	12.8	1.3	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2892)
Insulin_TMD	PF17870.1	gi|345005851|ref|YP_004808704.1|	-	0.14	12.3	0.7	0.19	11.8	0.7	1.2	1	0	0	1	1	1	0	Insulin	receptor	trans-membrane	segment
PseudoU_synth_1	PF01416.20	gi|345005852|ref|YP_004808705.1|	-	4e-11	43.3	0.0	8.5e-09	35.8	0.0	2.3	2	0	0	2	2	2	2	tRNA	pseudouridine	synthase
tRNA-synt_His	PF13393.6	gi|345005853|ref|YP_004808706.1|	-	2e-51	175.1	0.0	2.6e-51	174.7	0.0	1.1	1	0	0	1	1	1	1	Histidyl-tRNA	synthetase
HGTP_anticodon	PF03129.20	gi|345005853|ref|YP_004808706.1|	-	2.9e-12	46.6	0.2	7.1e-12	45.3	0.0	1.7	2	0	0	2	2	2	1	Anticodon	binding	domain
tRNA-synt_2b	PF00587.25	gi|345005853|ref|YP_004808706.1|	-	5.5e-08	33.0	0.0	7.1e-08	32.6	0.0	1.3	1	1	0	1	1	1	1	tRNA	synthetase	class	II	core	domain	(G,	H,	P,	S	and	T)
Asn_synthase	PF00733.21	gi|345005854|ref|YP_004808707.1|	-	0.011	15.5	0.3	0.015	15.0	0.3	1.3	1	1	0	1	1	1	0	Asparagine	synthase
tRNA_Me_trans	PF03054.16	gi|345005854|ref|YP_004808707.1|	-	0.041	12.7	0.0	0.12	11.1	0.0	1.8	1	1	0	1	1	1	0	tRNA	methyl	transferase
QueC	PF06508.13	gi|345005854|ref|YP_004808707.1|	-	0.071	12.6	0.0	0.11	11.9	0.0	1.3	1	0	0	1	1	1	0	Queuosine	biosynthesis	protein	QueC
PAPS_reduct	PF01507.19	gi|345005854|ref|YP_004808707.1|	-	0.077	13.0	0.0	0.13	12.3	0.0	1.4	1	1	0	1	1	1	0	Phosphoadenosine	phosphosulfate	reductase	family
Diphthami_syn_2	PF01902.17	gi|345005854|ref|YP_004808707.1|	-	0.11	12.0	0.1	0.23	11.0	0.1	1.7	1	1	0	1	1	1	0	Diphthamide	synthase
dsDNA_bind	PF01984.20	gi|345005855|ref|YP_004808708.1|	-	1.4e-26	93.0	12.6	1.6e-26	92.7	12.6	1.1	1	0	0	1	1	1	1	Double-stranded	DNA-binding	domain
FAM110_N	PF14161.6	gi|345005855|ref|YP_004808708.1|	-	0.048	13.9	0.7	0.075	13.2	0.5	1.4	1	1	0	1	1	1	0	Centrosome-associated	N	terminus
PCP_red	PF08369.10	gi|345005855|ref|YP_004808708.1|	-	0.057	13.6	0.1	0.11	12.8	0.1	1.5	1	0	0	1	1	1	0	Proto-chlorophyllide	reductase	57	kD	subunit
RMI1_N	PF08585.12	gi|345005855|ref|YP_004808708.1|	-	0.074	12.8	4.0	0.08	12.7	4.0	1.2	1	0	0	1	1	1	0	RecQ	mediated	genome	instability	protein
Nucleoplasmin	PF03066.15	gi|345005855|ref|YP_004808708.1|	-	0.13	12.8	0.3	0.18	12.3	0.3	1.2	1	0	0	1	1	1	0	Nucleoplasmin/nucleophosmin	domain
Arg_decarbox_C	PF17944.1	gi|345005855|ref|YP_004808708.1|	-	0.35	11.5	0.1	0.35	11.5	0.1	2.5	2	1	1	3	3	3	0	Arginine	decarboxylase	C-terminal	helical	extension
Gluconate_2-dh3	PF13618.6	gi|345005855|ref|YP_004808708.1|	-	1.1	9.4	5.9	0.75	10.0	3.2	2.0	1	1	1	2	2	2	0	Gluconate	2-dehydrogenase	subunit	3
Ribosomal_S19e	PF01090.19	gi|345005856|ref|YP_004808709.1|	-	1.1e-45	154.7	0.0	1.2e-45	154.5	0.0	1.0	1	0	0	1	1	1	1	Ribosomal	protein	S19e
GntR	PF00392.21	gi|345005856|ref|YP_004808709.1|	-	1.6e-06	27.7	0.3	9.5e-05	22.0	0.1	2.9	3	0	0	3	3	3	1	Bacterial	regulatory	proteins,	gntR	family
Mrr_N	PF14338.6	gi|345005856|ref|YP_004808709.1|	-	0.0026	17.8	0.2	0.047	13.8	0.1	2.1	2	0	0	2	2	2	1	Mrr	N-terminal	domain
HTH_12	PF08461.10	gi|345005856|ref|YP_004808709.1|	-	0.0092	15.9	1.2	0.021	14.8	0.2	2.1	3	0	0	3	3	3	1	Ribonuclease	R	winged-helix	domain
Rrf2	PF02082.20	gi|345005856|ref|YP_004808709.1|	-	0.17	12.3	0.1	0.43	11.0	0.0	1.6	2	0	0	2	2	2	0	Transcriptional	regulator
LPG_synthase_TM	PF03706.13	gi|345005857|ref|YP_004808710.1|	-	1e-40	140.2	38.2	1.2e-40	139.9	38.2	1.0	1	0	0	1	1	1	1	Lysylphosphatidylglycerol	synthase	TM	region
DUF4229	PF14012.6	gi|345005857|ref|YP_004808710.1|	-	0.034	14.2	1.5	0.034	14.2	1.5	5.1	4	2	2	6	6	6	0	Protein	of	unknown	function	(DUF4229)
AIRS	PF00586.24	gi|345005858|ref|YP_004808711.1|	-	8.2e-17	61.7	2.5	8.2e-17	61.7	2.5	2.0	2	1	0	2	2	2	1	AIR	synthase	related	protein,	N-terminal	domain
AIRS_C	PF02769.22	gi|345005858|ref|YP_004808711.1|	-	9.6e-12	45.3	0.4	1.9e-11	44.3	0.4	1.5	1	0	0	1	1	1	1	AIR	synthase	related	protein,	C-terminal	domain
Peptidase_M50	PF02163.22	gi|345005859|ref|YP_004808712.1|	-	5.2e-15	55.4	5.2	2.2e-08	33.7	0.1	2.4	1	1	1	2	2	2	2	Peptidase	family	M50
Put_DNA-bind_N	PF06971.13	gi|345005860|ref|YP_004808713.1|	-	0.1	12.6	0.0	0.19	11.8	0.0	1.4	1	0	0	1	1	1	0	Putative	DNA-binding	protein	N-terminus
MoaE	PF02391.17	gi|345005861|ref|YP_004808714.1|	-	8.2e-25	87.3	0.2	1.4e-24	86.5	0.2	1.4	1	0	0	1	1	1	1	MoaE	protein
AA_kinase	PF00696.28	gi|345005862|ref|YP_004808715.1|	-	3e-22	79.4	2.8	1e-21	77.7	2.8	1.7	1	1	0	1	1	1	1	Amino	acid	kinase	family
DUF2844	PF11005.8	gi|345005862|ref|YP_004808715.1|	-	0.054	13.5	0.5	0.17	11.9	0.4	1.8	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2844)
tRNA-synt_1f	PF01921.18	gi|345005863|ref|YP_004808716.1|	-	6.4e-100	334.6	0.0	8.7e-100	334.1	0.0	1.1	1	0	0	1	1	1	1	tRNA	synthetases	class	I	(K)
tRNA-synt_1g	PF09334.11	gi|345005863|ref|YP_004808716.1|	-	5.3e-09	35.3	0.0	2.7e-06	26.4	0.0	2.3	2	0	0	2	2	2	2	tRNA	synthetases	class	I	(M)
tRNA-synt_1e	PF01406.19	gi|345005863|ref|YP_004808716.1|	-	0.0037	16.6	0.0	0.015	14.7	0.0	1.9	2	0	0	2	2	2	1	tRNA	synthetases	class	I	(C)	catalytic	domain
tRNA-synt_1b	PF00579.25	gi|345005863|ref|YP_004808716.1|	-	0.16	11.2	0.0	2.4	7.4	0.0	2.1	2	0	0	2	2	2	0	tRNA	synthetases	class	I	(W	and	Y)
Peptidase_M50	PF02163.22	gi|345005864|ref|YP_004808717.1|	-	6.9e-20	71.4	0.0	1.1e-19	70.7	0.0	1.3	1	0	0	1	1	1	1	Peptidase	family	M50
PDZ_2	PF13180.6	gi|345005864|ref|YP_004808717.1|	-	5.5e-16	58.7	4.2	1.3e-06	28.6	0.2	3.4	2	1	1	3	3	3	3	PDZ	domain
PDZ_6	PF17820.1	gi|345005864|ref|YP_004808717.1|	-	9.7e-14	51.0	7.6	1.6e-07	31.0	2.1	3.2	3	0	0	3	3	3	2	PDZ	domain
PDZ	PF00595.24	gi|345005864|ref|YP_004808717.1|	-	5e-11	42.8	2.1	1.2e-06	28.8	0.4	2.5	1	1	1	2	2	2	2	PDZ	domain
Tricorn_PDZ	PF14685.6	gi|345005864|ref|YP_004808717.1|	-	6.9e-09	35.6	3.0	0.026	14.5	0.3	3.4	2	1	1	3	3	3	3	Tricorn	protease	PDZ	domain
PadR	PF03551.14	gi|345005865|ref|YP_004808718.1|	-	9.1e-23	80.0	0.1	1.4e-22	79.5	0.1	1.3	1	0	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
RTP	PF02334.16	gi|345005865|ref|YP_004808718.1|	-	0.058	14.0	0.0	0.09	13.4	0.0	1.3	1	0	0	1	1	1	0	Replication	terminator	protein
Chlor_dismutase	PF06778.12	gi|345005866|ref|YP_004808719.1|	-	4.7e-65	218.8	0.0	7e-65	218.3	0.0	1.3	1	0	0	1	1	1	1	Chlorite	dismutase
ABM	PF03992.16	gi|345005866|ref|YP_004808719.1|	-	1.6e-13	50.6	2.9	8.5e-12	45.0	0.2	3.3	3	0	0	3	3	3	2	Antibiotic	biosynthesis	monooxygenase
Hexapep	PF00132.24	gi|345005867|ref|YP_004808720.1|	-	0.00049	19.7	5.5	2.3	8.1	1.7	3.7	3	1	0	3	3	3	3	Bacterial	transferase	hexapeptide	(six	repeats)
Hexapep_2	PF14602.6	gi|345005867|ref|YP_004808720.1|	-	0.21	11.3	5.7	11	5.9	0.0	3.2	3	1	0	3	3	3	0	Hexapeptide	repeat	of	succinyl-transferase
DrsE	PF02635.15	gi|345005868|ref|YP_004808721.1|	-	1.1e-05	25.8	0.1	1.3e-05	25.5	0.1	1.2	1	0	0	1	1	1	1	DsrE/DsrF-like	family
MRP-S28	PF10213.9	gi|345005869|ref|YP_004808722.1|	-	0.06	13.8	0.0	0.065	13.7	0.0	1.1	1	0	0	1	1	1	0	Mitochondrial	ribosomal	subunit	protein
GPW_gp25	PF04965.14	gi|345005869|ref|YP_004808722.1|	-	0.093	12.5	0.1	0.093	12.5	0.1	1.1	1	0	0	1	1	1	0	Gene	25-like	lysozyme
DUF3099	PF11298.8	gi|345005870|ref|YP_004808723.1|	-	4.7	7.4	6.5	24	5.1	0.0	2.5	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF3099)
Ac76	PF05814.11	gi|345005872|ref|YP_004808725.1|	-	0.39	10.8	5.9	0.24	11.5	1.7	2.0	2	0	0	2	2	2	0	Orf76	(Ac76)
Virul_fac_BrkB	PF03631.15	gi|345005873|ref|YP_004808726.1|	-	3.4e-38	131.7	23.4	4.4e-38	131.4	23.4	1.0	1	0	0	1	1	1	1	Virulence	factor	BrkB
Pox_A9	PF04835.12	gi|345005873|ref|YP_004808726.1|	-	0.45	10.7	3.5	0.22	11.7	0.5	2.0	2	0	0	2	2	2	0	A9	protein	conserved	region
Tetraspanin	PF00335.20	gi|345005873|ref|YP_004808726.1|	-	2.5	7.8	0.0	2.5	7.8	0.0	2.7	3	1	0	3	3	3	0	Tetraspanin	family
ABC2_membrane_3	PF12698.7	gi|345005873|ref|YP_004808726.1|	-	9.7	5.2	26.3	20	4.1	26.3	1.5	1	1	0	1	1	1	0	ABC-2	family	transporter	protein
NAD_synthase	PF02540.17	gi|345005874|ref|YP_004808727.1|	-	1.1e-75	253.9	0.0	1.3e-75	253.7	0.0	1.0	1	0	0	1	1	1	1	NAD	synthase
tRNA_Me_trans	PF03054.16	gi|345005874|ref|YP_004808727.1|	-	2.3e-05	23.3	0.0	0.0022	16.9	0.0	2.3	2	0	0	2	2	2	2	tRNA	methyl	transferase
QueC	PF06508.13	gi|345005874|ref|YP_004808727.1|	-	0.0012	18.3	0.0	0.0064	16.0	0.0	1.9	1	1	0	2	2	2	1	Queuosine	biosynthesis	protein	QueC
Asn_synthase	PF00733.21	gi|345005874|ref|YP_004808727.1|	-	0.028	14.1	0.2	0.072	12.7	0.1	1.5	1	1	0	1	1	1	0	Asparagine	synthase
DUF3105	PF11303.8	gi|345005875|ref|YP_004808728.1|	-	8.8e-31	106.7	0.1	1.2e-30	106.3	0.1	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3105)
zf-C2H2_4	PF13894.6	gi|345005875|ref|YP_004808728.1|	-	0.0033	18.1	0.6	0.0059	17.3	0.6	1.4	1	0	0	1	1	1	1	C2H2-type	zinc	finger
SBP_bac_11	PF13531.6	gi|345005875|ref|YP_004808728.1|	-	0.034	13.9	0.0	0.049	13.4	0.0	1.3	1	0	0	1	1	1	0	Bacterial	extracellular	solute-binding	protein
TM_helix	PF05552.12	gi|345005877|ref|YP_004808730.1|	-	8.5e-29	99.3	26.2	1.6e-12	47.2	2.7	4.7	4	0	0	4	4	4	3	Conserved	TM	helix
Colicin_V	PF02674.16	gi|345005877|ref|YP_004808730.1|	-	0.16	12.0	0.1	0.16	12.0	0.1	4.2	2	1	2	4	4	4	0	Colicin	V	production	protein
FtsX	PF02687.21	gi|345005877|ref|YP_004808730.1|	-	0.52	10.8	26.5	0.65	10.5	4.2	4.5	3	1	1	4	4	4	0	FtsX-like	permease	family
TctB	PF07331.11	gi|345005877|ref|YP_004808730.1|	-	4.3	7.6	37.6	0.7	10.2	17.5	3.1	1	1	2	3	3	3	0	Tripartite	tricarboxylate	transporter	TctB	family
Cupin_2	PF07883.11	gi|345005878|ref|YP_004808731.1|	-	3.7e-14	52.2	0.1	6.5e-14	51.4	0.1	1.4	1	0	0	1	1	1	1	Cupin	domain
Cupin_1	PF00190.22	gi|345005878|ref|YP_004808731.1|	-	4.7e-06	26.3	0.0	5.4e-06	26.1	0.0	1.1	1	0	0	1	1	1	1	Cupin
Cupin_7	PF12973.7	gi|345005878|ref|YP_004808731.1|	-	0.00024	20.9	0.0	0.00038	20.3	0.0	1.3	1	0	0	1	1	1	1	ChrR	Cupin-like	domain
Cupin_6	PF12852.7	gi|345005878|ref|YP_004808731.1|	-	0.00089	19.0	0.1	0.001	18.8	0.1	1.1	1	0	0	1	1	1	1	Cupin
Cupin_3	PF05899.12	gi|345005878|ref|YP_004808731.1|	-	0.00094	18.8	0.0	0.0017	18.0	0.0	1.5	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF861)
Pirin	PF02678.16	gi|345005878|ref|YP_004808731.1|	-	0.023	14.7	0.0	0.029	14.3	0.0	1.2	1	0	0	1	1	1	0	Pirin
3-HAO	PF06052.12	gi|345005878|ref|YP_004808731.1|	-	0.043	13.5	0.0	0.048	13.3	0.0	1.1	1	0	0	1	1	1	0	3-hydroxyanthranilic	acid	dioxygenase
Duffy_binding	PF05424.11	gi|345005878|ref|YP_004808731.1|	-	0.069	13.2	0.0	0.088	12.8	0.0	1.1	1	0	0	1	1	1	0	Duffy	binding	domain
DUF4863	PF16155.5	gi|345005878|ref|YP_004808731.1|	-	0.13	12.1	0.0	0.18	11.7	0.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4863)
YdjM	PF04307.14	gi|345005879|ref|YP_004808732.1|	-	0.00061	19.1	16.6	0.022	14.1	16.6	2.3	1	1	0	1	1	1	1	LexA-binding,	inner	membrane-associated	putative	hydrolase
PIN_3	PF13470.6	gi|345005881|ref|YP_004808734.1|	-	0.047	14.4	0.6	0.098	13.4	0.5	1.5	1	1	0	1	1	1	0	PIN	domain
SatD	PF16264.5	gi|345005882|ref|YP_004808735.1|	-	3.3e-33	115.1	0.0	4.3e-33	114.7	0.0	1.1	1	0	0	1	1	1	1	SatD	family	(SatD)
F_actin_bind	PF08919.10	gi|345005882|ref|YP_004808735.1|	-	0.027	14.6	0.1	2.4	8.3	0.0	2.6	2	1	1	3	3	3	0	F-actin	binding
PuR_N	PF09182.10	gi|345005882|ref|YP_004808735.1|	-	0.06	13.3	0.0	0.15	12.0	0.0	1.6	1	0	0	1	1	1	0	Bacterial	purine	repressor,	N-terminal
Ham1p_like	PF01725.16	gi|345005883|ref|YP_004808736.1|	-	1.3e-49	168.6	0.0	1.6e-49	168.4	0.0	1.1	1	0	0	1	1	1	1	Ham1	family
Peptidase_M22	PF00814.25	gi|345005885|ref|YP_004808738.1|	-	3.2e-74	250.0	0.0	4.3e-74	249.6	0.0	1.1	1	0	0	1	1	1	1	Glycoprotease	family
Kdo	PF06293.14	gi|345005885|ref|YP_004808738.1|	-	0.0011	18.3	0.0	0.14	11.5	0.0	2.2	2	0	0	2	2	2	2	Lipopolysaccharide	kinase	(Kdo/WaaP)	family
APH	PF01636.23	gi|345005885|ref|YP_004808738.1|	-	0.0033	17.4	6.1	0.05	13.5	1.0	2.5	1	1	1	2	2	2	2	Phosphotransferase	enzyme	family
RIO1	PF01163.22	gi|345005885|ref|YP_004808738.1|	-	0.023	14.3	0.0	0.052	13.1	0.0	1.5	1	1	0	1	1	1	0	RIO1	family
Ribosomal_S24e	PF01282.19	gi|345005886|ref|YP_004808739.1|	-	7.8e-25	86.6	0.0	9.7e-25	86.3	0.0	1.1	1	0	0	1	1	1	1	Ribosomal	protein	S24e
hNIFK_binding	PF12196.8	gi|345005886|ref|YP_004808739.1|	-	4.4	6.9	10.7	2.5	7.6	0.1	2.6	3	0	0	3	3	3	0	FHA	Ki67	binding	domain	of	hNIFK
DUF359	PF04019.12	gi|345005888|ref|YP_004808741.1|	-	1.8e-39	134.3	0.1	2.4e-39	133.9	0.1	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF359)
Amidase_6	PF12671.7	gi|345005888|ref|YP_004808741.1|	-	0.071	13.2	0.0	0.096	12.8	0.0	1.1	1	0	0	1	1	1	0	Putative	amidase	domain
DUF4911	PF16256.5	gi|345005888|ref|YP_004808741.1|	-	0.15	12.0	0.3	1.3	9.0	0.0	2.4	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF4911)
Spt4	PF06093.13	gi|345005889|ref|YP_004808742.1|	-	5.5e-15	55.2	0.1	6.4e-15	55.0	0.1	1.1	1	0	0	1	1	1	1	Spt4/RpoE2	zinc	finger
DZR	PF12773.7	gi|345005889|ref|YP_004808742.1|	-	0.00025	21.0	0.9	0.00034	20.6	0.9	1.2	1	0	0	1	1	1	1	Double	zinc	ribbon
zinc_ribbon_2	PF13240.6	gi|345005889|ref|YP_004808742.1|	-	0.002	17.8	2.4	0.0028	17.3	2.4	1.2	1	0	0	1	1	1	1	zinc-ribbon	domain
HypA	PF01155.19	gi|345005889|ref|YP_004808742.1|	-	0.027	14.5	0.2	0.031	14.3	0.2	1.2	1	0	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
zf-RanBP	PF00641.18	gi|345005889|ref|YP_004808742.1|	-	0.058	12.7	1.4	0.08	12.3	1.4	1.3	1	0	0	1	1	1	0	Zn-finger	in	Ran	binding	protein	and	others
zf-ribbon_3	PF13248.6	gi|345005889|ref|YP_004808742.1|	-	0.23	10.9	0.3	0.23	10.9	0.3	1.8	1	1	1	2	2	2	0	zinc-ribbon	domain
S1	PF00575.23	gi|345005890|ref|YP_004808743.1|	-	8.8e-14	51.6	0.3	1.9e-13	50.5	0.3	1.6	1	0	0	1	1	1	1	S1	RNA	binding	domain
SHS2_Rpb7-N	PF03876.17	gi|345005890|ref|YP_004808743.1|	-	9.8e-13	48.3	0.1	1.6e-12	47.6	0.1	1.4	1	0	0	1	1	1	1	SHS2	domain	found	in	N	terminus	of	Rpb7p/Rpc25p/MJ0397
RNA_pol_Rbc25	PF08292.12	gi|345005890|ref|YP_004808743.1|	-	0.1	12.8	0.0	0.17	12.1	0.0	1.4	1	0	0	1	1	1	0	RNA	polymerase	III	subunit	Rpc25
S1_2	PF13509.6	gi|345005890|ref|YP_004808743.1|	-	0.11	12.5	0.0	1.5	8.9	0.0	2.3	1	1	1	2	2	2	0	S1	domain
PIN_9	PF18477.1	gi|345005891|ref|YP_004808744.1|	-	2.8e-42	143.7	0.4	3.1e-42	143.5	0.4	1.0	1	0	0	1	1	1	1	PIN	like	domain
DUF188	PF02639.14	gi|345005891|ref|YP_004808744.1|	-	4.8e-05	23.0	0.5	7e-05	22.5	0.5	1.3	1	0	0	1	1	1	1	Uncharacterized	BCR,	YaiI/YqxD	family	COG1671
PIN_4	PF13638.6	gi|345005891|ref|YP_004808744.1|	-	0.0013	19.0	0.0	0.12	12.7	0.0	2.1	1	1	1	2	2	2	2	PIN	domain
PIN	PF01850.21	gi|345005891|ref|YP_004808744.1|	-	0.024	15.1	0.1	0.037	14.5	0.1	1.3	1	1	0	1	1	1	0	PIN	domain
5_3_exonuc_N	PF02739.16	gi|345005891|ref|YP_004808744.1|	-	0.056	13.3	0.1	0.067	13.1	0.1	1.3	1	0	0	1	1	1	0	5'-3'	exonuclease,	N-terminal	resolvase-like	domain
PIN_3	PF13470.6	gi|345005891|ref|YP_004808744.1|	-	0.41	11.4	3.6	2.1	9.1	3.6	1.9	1	1	0	1	1	1	0	PIN	domain
GTP_EFTU	PF00009.27	gi|345005892|ref|YP_004808745.1|	-	4.8e-30	104.5	3.0	9.3e-30	103.6	3.0	1.5	1	1	0	1	1	1	1	Elongation	factor	Tu	GTP	binding	domain
eIF2_C	PF09173.11	gi|345005892|ref|YP_004808745.1|	-	9.4e-30	102.7	0.2	3.3e-29	101.0	0.0	2.0	2	0	0	2	2	2	1	Initiation	factor	eIF2	gamma,	C	terminal
GTP_EFTU_D2	PF03144.25	gi|345005892|ref|YP_004808745.1|	-	4.8e-07	30.1	0.3	1.3e-06	28.7	0.3	1.8	1	0	0	1	1	1	1	Elongation	factor	Tu	domain	2
MMR_HSR1	PF01926.23	gi|345005892|ref|YP_004808745.1|	-	3.7e-05	23.8	0.0	0.00012	22.2	0.0	1.8	1	1	0	1	1	1	1	50S	ribosome-binding	GTPase
RsgA_GTPase	PF03193.16	gi|345005892|ref|YP_004808745.1|	-	4.3e-05	23.5	1.8	0.0013	18.7	0.3	2.2	2	0	0	2	2	2	1	RsgA	GTPase
PduV-EutP	PF10662.9	gi|345005892|ref|YP_004808745.1|	-	0.0033	17.2	0.8	0.26	11.1	0.0	2.3	2	0	0	2	2	2	1	Ethanolamine	utilisation	-	propanediol	utilisation
SRPRB	PF09439.10	gi|345005892|ref|YP_004808745.1|	-	0.03	13.7	0.1	0.76	9.2	0.1	2.2	1	1	0	1	1	1	0	Signal	recognition	particle	receptor	beta	subunit
MMR_HSR1_Xtn	PF16897.5	gi|345005892|ref|YP_004808745.1|	-	0.034	14.2	0.1	0.065	13.3	0.1	1.5	1	0	0	1	1	1	0	C-terminal	region	of	MMR_HSR1	domain
FeoB_N	PF02421.18	gi|345005892|ref|YP_004808745.1|	-	0.17	11.4	3.6	5.9	6.4	0.0	2.4	2	1	0	2	2	2	0	Ferrous	iron	transport	protein	B
Arylsulfotran_2	PF14269.6	gi|345005894|ref|YP_004808747.1|	-	5.4e-10	39.1	0.5	9.8e-06	25.1	0.5	2.4	2	1	0	2	2	2	2	Arylsulfotransferase	(ASST)
Arylsulfotrans	PF05935.11	gi|345005894|ref|YP_004808747.1|	-	1.4e-09	37.3	2.3	3.3e-09	36.1	1.6	1.9	1	1	1	2	2	2	1	Arylsulfotransferase	(ASST)
Orthopox_B11R	PF07033.11	gi|345005894|ref|YP_004808747.1|	-	0.11	12.3	0.7	0.22	11.3	0.7	1.4	1	0	0	1	1	1	0	Orthopoxvirus	B11R	protein
NHL	PF01436.21	gi|345005894|ref|YP_004808747.1|	-	0.17	12.0	6.3	0.96	9.6	0.0	3.9	4	0	0	4	4	4	0	NHL	repeat
Lactamase_B_2	PF12706.7	gi|345005895|ref|YP_004808748.1|	-	4.1e-19	68.9	0.6	5.9e-19	68.4	0.6	1.1	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
Lactamase_B	PF00753.27	gi|345005895|ref|YP_004808748.1|	-	0.00067	19.7	2.5	0.0013	18.7	2.4	1.5	1	1	0	1	1	1	1	Metallo-beta-lactamase	superfamily
AAA	PF00004.29	gi|345005897|ref|YP_004808750.1|	-	7.4e-39	133.2	0.2	1.5e-38	132.2	0.0	1.6	2	0	0	2	2	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_lid_3	PF17862.1	gi|345005897|ref|YP_004808750.1|	-	6.3e-09	35.5	0.0	1.7e-08	34.2	0.0	1.7	1	0	0	1	1	1	1	AAA+	lid	domain
AAA_18	PF13238.6	gi|345005897|ref|YP_004808750.1|	-	6.4e-06	26.7	0.4	5e-05	23.8	0.0	2.5	3	0	0	3	3	2	1	AAA	domain
AAA_5	PF07728.14	gi|345005897|ref|YP_004808750.1|	-	6.5e-06	26.2	0.1	3e-05	24.0	0.1	2.2	1	1	0	1	1	1	1	AAA	domain	(dynein-related	subfamily)
AAA_33	PF13671.6	gi|345005897|ref|YP_004808750.1|	-	8.8e-06	25.9	0.0	2.4e-05	24.5	0.0	1.8	1	0	0	1	1	1	1	AAA	domain
RuvB_N	PF05496.12	gi|345005897|ref|YP_004808750.1|	-	4.2e-05	23.3	0.0	8.3e-05	22.4	0.0	1.5	1	0	0	1	1	1	1	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
AAA_28	PF13521.6	gi|345005897|ref|YP_004808750.1|	-	0.0001	22.6	0.2	0.0001	22.6	0.2	3.1	3	1	0	3	3	2	1	AAA	domain
AAA_22	PF13401.6	gi|345005897|ref|YP_004808750.1|	-	0.00011	22.4	0.7	0.0058	16.9	0.4	2.9	2	1	0	2	2	2	1	AAA	domain
AAA_2	PF07724.14	gi|345005897|ref|YP_004808750.1|	-	0.00013	22.2	1.2	0.00038	20.6	0.0	2.4	2	1	0	2	2	2	1	AAA	domain	(Cdc48	subfamily)
AAA_16	PF13191.6	gi|345005897|ref|YP_004808750.1|	-	0.00018	22.0	0.8	0.0061	17.0	0.4	3.0	1	1	0	1	1	1	1	AAA	ATPase	domain
TIP49	PF06068.13	gi|345005897|ref|YP_004808750.1|	-	0.0011	18.2	0.0	0.0044	16.3	0.0	2.0	2	0	0	2	2	2	1	TIP49	P-loop	domain
AAA_17	PF13207.6	gi|345005897|ref|YP_004808750.1|	-	0.0012	19.3	0.1	0.0029	18.0	0.1	1.9	1	1	0	1	1	1	1	AAA	domain
AAA_7	PF12775.7	gi|345005897|ref|YP_004808750.1|	-	0.0015	18.1	0.0	0.0033	17.0	0.0	1.5	1	0	0	1	1	1	1	P-loop	containing	dynein	motor	region
AAA_25	PF13481.6	gi|345005897|ref|YP_004808750.1|	-	0.002	17.8	0.9	0.014	15.0	0.1	2.6	2	1	0	2	2	2	1	AAA	domain
SKI	PF01202.22	gi|345005897|ref|YP_004808750.1|	-	0.0024	18.0	0.0	0.0059	16.7	0.0	1.7	1	0	0	1	1	1	1	Shikimate	kinase
Cytidylate_kin2	PF13189.6	gi|345005897|ref|YP_004808750.1|	-	0.0056	16.8	0.0	0.011	15.8	0.0	1.5	1	0	0	1	1	1	1	Cytidylate	kinase-like	family
AAA_3	PF07726.11	gi|345005897|ref|YP_004808750.1|	-	0.0084	16.0	0.0	0.015	15.1	0.0	1.4	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
Cytidylate_kin	PF02224.18	gi|345005897|ref|YP_004808750.1|	-	0.0093	15.7	0.0	0.024	14.4	0.0	1.7	1	0	0	1	1	1	1	Cytidylate	kinase
RNA_helicase	PF00910.22	gi|345005897|ref|YP_004808750.1|	-	0.011	16.1	0.0	0.023	15.1	0.0	1.5	1	0	0	1	1	1	0	RNA	helicase
MMR_HSR1	PF01926.23	gi|345005897|ref|YP_004808750.1|	-	0.012	15.7	0.0	0.028	14.5	0.0	1.7	1	0	0	1	1	1	0	50S	ribosome-binding	GTPase
T2SSE	PF00437.20	gi|345005897|ref|YP_004808750.1|	-	0.012	14.7	0.0	0.022	13.8	0.0	1.4	1	0	0	1	1	1	0	Type	II/IV	secretion	system	protein
TniB	PF05621.11	gi|345005897|ref|YP_004808750.1|	-	0.013	14.9	0.1	1.8	7.9	0.0	2.6	2	1	1	3	3	3	0	Bacterial	TniB	protein
Rad17	PF03215.15	gi|345005897|ref|YP_004808750.1|	-	0.016	15.2	0.0	0.025	14.5	0.0	1.3	1	0	0	1	1	1	0	Rad17	P-loop	domain
IstB_IS21	PF01695.17	gi|345005897|ref|YP_004808750.1|	-	0.016	15.0	0.0	0.028	14.2	0.0	1.5	1	0	0	1	1	1	0	IstB-like	ATP	binding	protein
Sigma54_activ_2	PF14532.6	gi|345005897|ref|YP_004808750.1|	-	0.016	15.3	0.0	0.029	14.5	0.0	1.4	1	0	0	1	1	1	0	Sigma-54	interaction	domain
AAA_11	PF13086.6	gi|345005897|ref|YP_004808750.1|	-	0.019	14.8	0.0	0.031	14.1	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
ATPase	PF06745.13	gi|345005897|ref|YP_004808750.1|	-	0.024	14.0	0.1	0.058	12.7	0.1	1.7	1	1	0	1	1	1	0	KaiC
TsaE	PF02367.17	gi|345005897|ref|YP_004808750.1|	-	0.025	14.6	0.0	0.053	13.5	0.0	1.5	1	0	0	1	1	1	0	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
ABC_tran	PF00005.27	gi|345005897|ref|YP_004808750.1|	-	0.027	15.0	0.0	0.071	13.6	0.0	1.8	1	0	0	1	1	1	0	ABC	transporter
AAA_14	PF13173.6	gi|345005897|ref|YP_004808750.1|	-	0.04	13.9	0.0	0.12	12.4	0.0	1.9	1	0	0	1	1	1	0	AAA	domain
Mg_chelatase	PF01078.21	gi|345005897|ref|YP_004808750.1|	-	0.041	13.3	0.0	0.08	12.3	0.0	1.5	1	0	0	1	1	1	0	Magnesium	chelatase,	subunit	ChlI
DUF815	PF05673.13	gi|345005897|ref|YP_004808750.1|	-	0.054	12.7	0.1	0.11	11.6	0.1	1.6	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF815)
ResIII	PF04851.15	gi|345005897|ref|YP_004808750.1|	-	0.06	13.3	0.0	0.096	12.7	0.0	1.4	1	0	0	1	1	1	0	Type	III	restriction	enzyme,	res	subunit
Guanylate_kin	PF00625.21	gi|345005897|ref|YP_004808750.1|	-	0.071	12.8	0.1	7.4	6.2	0.0	2.5	1	1	1	2	2	2	0	Guanylate	kinase
NACHT	PF05729.12	gi|345005897|ref|YP_004808750.1|	-	0.1	12.5	0.1	6	6.7	0.0	2.5	1	1	1	2	2	2	0	NACHT	domain
Rbsn	PF11464.8	gi|345005897|ref|YP_004808750.1|	-	0.12	12.1	0.3	14	5.5	0.0	2.7	2	0	0	2	2	2	0	Rabenosyn	Rab	binding	domain
AAA_24	PF13479.6	gi|345005897|ref|YP_004808750.1|	-	0.12	12.1	0.2	0.35	10.6	0.1	2.0	2	1	0	2	2	1	0	AAA	domain
CBFD_NFYB_HMF	PF00808.23	gi|345005897|ref|YP_004808750.1|	-	0.13	12.5	0.1	0.76	10.1	0.0	2.2	2	0	0	2	2	2	0	Histone-like	transcription	factor	(CBF/NF-Y)	and	archaeal	histone
SRP54	PF00448.22	gi|345005897|ref|YP_004808750.1|	-	0.13	11.8	0.9	0.4	10.3	0.0	2.1	2	1	1	3	3	2	0	SRP54-type	protein,	GTPase	domain
AAA_19	PF13245.6	gi|345005897|ref|YP_004808750.1|	-	0.44	10.9	2.8	0.7	10.2	0.6	2.3	2	1	0	2	2	2	0	AAA	domain
DUF4149	PF13664.6	gi|345005898|ref|YP_004808751.1|	-	0.024	15.0	0.5	0.038	14.3	0.2	1.4	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4149)
MotA_ExbB	PF01618.16	gi|345005899|ref|YP_004808752.1|	-	0.09	12.5	0.1	0.13	12.0	0.1	1.2	1	0	0	1	1	1	0	MotA/TolQ/ExbB	proton	channel	family
AAT	PF03417.16	gi|345005900|ref|YP_004808753.1|	-	1.3e-13	51.2	0.0	1.9e-13	50.7	0.0	1.2	1	0	0	1	1	1	1	Acyl-coenzyme	A:6-aminopenicillanic	acid	acyl-transferase
Thiolase_N	PF00108.23	gi|345005901|ref|YP_004808754.1|	-	3e-74	249.6	0.7	4.8e-74	249.0	0.7	1.3	1	0	0	1	1	1	1	Thiolase,	N-terminal	domain
Thiolase_C	PF02803.18	gi|345005901|ref|YP_004808754.1|	-	3.9e-42	142.8	0.1	7.8e-42	141.8	0.1	1.4	1	0	0	1	1	1	1	Thiolase,	C-terminal	domain
ketoacyl-synt	PF00109.26	gi|345005901|ref|YP_004808754.1|	-	0.00029	20.5	0.1	0.00061	19.5	0.1	1.6	1	0	0	1	1	1	1	Beta-ketoacyl	synthase,	N-terminal	domain
HTH_7	PF02796.15	gi|345005901|ref|YP_004808754.1|	-	0.14	12.3	0.0	0.4	10.8	0.0	1.7	2	0	0	2	2	2	0	Helix-turn-helix	domain	of	resolvase
Lactamase_B	PF00753.27	gi|345005902|ref|YP_004808755.1|	-	7.5e-21	75.0	14.1	1.2e-20	74.4	14.1	1.3	1	0	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Lactamase_B_2	PF12706.7	gi|345005902|ref|YP_004808755.1|	-	4e-05	23.2	1.7	8e-05	22.2	1.7	1.6	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
AMP-binding	PF00501.28	gi|345005903|ref|YP_004808756.1|	-	4.9e-91	305.4	0.0	5.8e-91	305.2	0.0	1.1	1	0	0	1	1	1	1	AMP-binding	enzyme
AMP-binding_C	PF13193.6	gi|345005903|ref|YP_004808756.1|	-	0.13	13.2	1.5	0.28	12.2	0.3	2.3	2	1	0	2	2	2	0	AMP-binding	enzyme	C-terminal	domain
Na_H_Exchanger	PF00999.21	gi|345005904|ref|YP_004808757.1|	-	4.6e-32	111.3	45.8	6.5e-32	110.8	45.8	1.1	1	0	0	1	1	1	1	Sodium/hydrogen	exchanger	family
TrkA_N	PF02254.18	gi|345005904|ref|YP_004808757.1|	-	5.5e-32	110.5	0.6	1.3e-31	109.3	0.6	1.7	1	0	0	1	1	1	1	TrkA-N	domain
TrkA_C	PF02080.21	gi|345005904|ref|YP_004808757.1|	-	3.8e-13	49.1	0.1	1.1e-12	47.6	0.0	2.0	2	0	0	2	2	1	1	TrkA-C	domain
F420_oxidored	PF03807.17	gi|345005904|ref|YP_004808757.1|	-	9.2e-07	29.4	2.3	0.0013	19.3	0.3	3.5	2	1	1	3	3	3	1	NADP	oxidoreductase	coenzyme	F420-dependent
NAD_binding_7	PF13241.6	gi|345005904|ref|YP_004808757.1|	-	9.5e-07	29.2	0.6	2.1e-06	28.1	0.1	1.8	2	0	0	2	2	1	1	Putative	NAD(P)-binding
UDPG_MGDP_dh_N	PF03721.14	gi|345005904|ref|YP_004808757.1|	-	8e-05	22.3	0.2	0.00013	21.6	0.2	1.3	1	0	0	1	1	1	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
ApbA	PF02558.16	gi|345005904|ref|YP_004808757.1|	-	0.00014	21.5	0.2	0.00037	20.2	0.2	1.7	1	0	0	1	1	1	1	Ketopantoate	reductase	PanE/ApbA
FAD_binding_3	PF01494.19	gi|345005904|ref|YP_004808757.1|	-	0.00016	21.0	0.1	0.00022	20.6	0.1	1.2	1	0	0	1	1	1	1	FAD	binding	domain
NAD_binding_10	PF13460.6	gi|345005904|ref|YP_004808757.1|	-	0.00021	21.3	3.8	0.00099	19.0	3.0	2.1	1	1	1	2	2	2	1	NAD(P)H-binding
Epimerase	PF01370.21	gi|345005904|ref|YP_004808757.1|	-	0.00043	19.8	0.2	0.00063	19.3	0.2	1.3	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
3HCDH_N	PF02737.18	gi|345005904|ref|YP_004808757.1|	-	0.0035	17.2	0.4	0.0089	15.9	0.4	1.7	1	0	0	1	1	1	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
FAD_binding_2	PF00890.24	gi|345005904|ref|YP_004808757.1|	-	0.0039	16.3	0.3	0.0063	15.6	0.3	1.3	1	0	0	1	1	1	1	FAD	binding	domain
Pyr_redox_2	PF07992.14	gi|345005904|ref|YP_004808757.1|	-	0.0043	16.3	0.3	0.0084	15.4	0.3	1.4	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
DAO	PF01266.24	gi|345005904|ref|YP_004808757.1|	-	0.0043	16.7	0.2	0.0066	16.1	0.2	1.4	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
NAD_Gly3P_dh_N	PF01210.23	gi|345005904|ref|YP_004808757.1|	-	0.0057	16.6	0.0	0.013	15.4	0.0	1.6	1	0	0	1	1	1	1	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
NmrA	PF05368.13	gi|345005904|ref|YP_004808757.1|	-	0.0062	16.1	1.6	0.37	10.3	0.8	2.2	1	1	1	2	2	2	1	NmrA-like	family
Shikimate_DH	PF01488.20	gi|345005904|ref|YP_004808757.1|	-	0.012	15.7	0.1	0.021	14.9	0.1	1.4	1	0	0	1	1	1	0	Shikimate	/	quinate	5-dehydrogenase
Pyr_redox	PF00070.27	gi|345005904|ref|YP_004808757.1|	-	0.015	15.8	0.6	0.055	14.0	0.4	2.1	2	0	0	2	2	1	0	Pyridine	nucleotide-disulphide	oxidoreductase
AlaDh_PNT_C	PF01262.21	gi|345005904|ref|YP_004808757.1|	-	0.018	14.3	0.9	0.051	12.9	0.9	1.7	1	0	0	1	1	1	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
XdhC_C	PF13478.6	gi|345005904|ref|YP_004808757.1|	-	0.019	15.5	0.0	0.042	14.4	0.0	1.6	1	0	0	1	1	1	0	XdhC	Rossmann	domain
NAD_binding_2	PF03446.15	gi|345005904|ref|YP_004808757.1|	-	0.023	14.9	0.0	0.044	14.0	0.0	1.6	1	0	0	1	1	1	0	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
NAD_binding_8	PF13450.6	gi|345005904|ref|YP_004808757.1|	-	0.033	14.4	0.3	0.088	13.1	0.3	1.7	1	0	0	1	1	1	0	NAD(P)-binding	Rossmann-like	domain
Sacchrp_dh_NADP	PF03435.18	gi|345005904|ref|YP_004808757.1|	-	0.036	14.3	6.3	0.066	13.5	0.3	2.7	2	1	1	3	3	2	0	Saccharopine	dehydrogenase	NADP	binding	domain
IlvN	PF07991.12	gi|345005904|ref|YP_004808757.1|	-	0.044	13.4	0.1	0.076	12.6	0.1	1.3	1	0	0	1	1	1	0	Acetohydroxy	acid	isomeroreductase,	NADPH-binding	domain
Lycopene_cycl	PF05834.12	gi|345005904|ref|YP_004808757.1|	-	0.048	12.7	0.0	0.069	12.2	0.0	1.2	1	0	0	1	1	1	0	Lycopene	cyclase	protein
2-Hacid_dh_C	PF02826.19	gi|345005904|ref|YP_004808757.1|	-	0.051	12.9	2.6	0.085	12.2	0.2	2.1	2	0	0	2	2	2	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
Castor_Poll_mid	PF06241.12	gi|345005904|ref|YP_004808757.1|	-	0.069	13.1	0.0	0.15	12.0	0.0	1.5	1	0	0	1	1	1	0	Castor	and	Pollux,	part	of	voltage-gated	ion	channel
adh_short	PF00106.25	gi|345005904|ref|YP_004808757.1|	-	0.091	12.2	0.4	0.19	11.2	0.4	1.6	1	1	0	1	1	1	0	short	chain	dehydrogenase
TraD	PF06412.11	gi|345005904|ref|YP_004808757.1|	-	0.28	11.0	2.9	6.9	6.6	0.2	2.6	2	0	0	2	2	2	0	Conjugal	transfer	protein	TraD
Seryl_tRNA_N	PF02403.22	gi|345005906|ref|YP_004808759.1|	-	2.8e-28	98.3	3.4	4.3e-28	97.7	3.4	1.3	1	0	0	1	1	1	1	Seryl-tRNA	synthetase	N-terminal	domain
tRNA-synt_2b	PF00587.25	gi|345005906|ref|YP_004808759.1|	-	7.1e-27	94.5	0.0	1.1e-26	93.9	0.0	1.3	1	0	0	1	1	1	1	tRNA	synthetase	class	II	core	domain	(G,	H,	P,	S	and	T)
DUF3323	PF11796.8	gi|345005906|ref|YP_004808759.1|	-	0.015	15.2	4.4	0.028	14.3	4.4	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	N-terminus	(DUF3323)
DUF3450	PF11932.8	gi|345005906|ref|YP_004808759.1|	-	0.04	13.2	3.0	0.15	11.3	2.9	1.9	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF3450)
RecX	PF02631.16	gi|345005906|ref|YP_004808759.1|	-	0.049	14.1	0.8	0.088	13.3	0.8	1.4	1	0	0	1	1	1	0	RecX	family
Transcrip_reg	PF01709.20	gi|345005906|ref|YP_004808759.1|	-	0.15	11.5	2.1	0.88	8.9	2.1	2.1	1	1	0	1	1	1	0	Transcriptional	regulator
Kre28	PF17097.5	gi|345005906|ref|YP_004808759.1|	-	0.26	10.2	2.4	0.37	9.7	2.4	1.1	1	0	0	1	1	1	0	Spindle	pole	body	component
Golgin_A5	PF09787.9	gi|345005906|ref|YP_004808759.1|	-	1.4	8.3	5.1	2.1	7.8	5.1	1.1	1	0	0	1	1	1	0	Golgin	subfamily	A	member	5
APG6_N	PF17675.1	gi|345005906|ref|YP_004808759.1|	-	4.8	7.7	9.4	9	6.8	9.4	1.4	1	0	0	1	1	1	0	Apg6	coiled-coil	region
SnoaL_2	PF12680.7	gi|345005907|ref|YP_004808760.1|	-	1.3e-08	35.4	1.0	1.6e-08	35.1	1.0	1.1	1	0	0	1	1	1	1	SnoaL-like	domain
DUF4440	PF14534.6	gi|345005907|ref|YP_004808760.1|	-	9.8e-05	22.7	0.0	0.00012	22.4	0.0	1.4	1	1	0	1	1	1	1	Domain	of	unknown	function	(DUF4440)
SnoaL_4	PF13577.6	gi|345005907|ref|YP_004808760.1|	-	0.0073	16.4	0.1	0.019	15.1	0.0	1.7	1	1	1	2	2	2	1	SnoaL-like	domain
NTF2	PF02136.20	gi|345005907|ref|YP_004808760.1|	-	0.014	16.0	0.0	0.017	15.7	0.0	1.1	1	0	0	1	1	1	0	Nuclear	transport	factor	2	(NTF2)	domain
DUF4829	PF16111.5	gi|345005907|ref|YP_004808760.1|	-	0.085	13.7	0.0	0.1	13.4	0.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4829)
Ribo_biogen_C	PF04034.13	gi|345005908|ref|YP_004808761.1|	-	5.1e-46	155.5	0.0	6.3e-46	155.2	0.0	1.1	1	0	0	1	1	1	1	Ribosome	biogenesis	protein,	C-terminal
RLI	PF04068.15	gi|345005908|ref|YP_004808761.1|	-	1.8e-10	40.4	0.0	2.8e-10	39.9	0.0	1.3	1	0	0	1	1	1	1	Possible	Fer4-like	domain	in	RNase	L	inhibitor,	RLI
DTW	PF03942.15	gi|345005908|ref|YP_004808761.1|	-	0.0048	16.6	0.0	0.013	15.2	0.0	1.6	1	1	0	1	1	1	1	DTW	domain
FGGY_N	PF00370.21	gi|345005909|ref|YP_004808762.1|	-	1.7e-74	250.5	0.0	2.3e-74	250.1	0.0	1.2	1	0	0	1	1	1	1	FGGY	family	of	carbohydrate	kinases,	N-terminal	domain
FGGY_C	PF02782.16	gi|345005909|ref|YP_004808762.1|	-	5.4e-58	196.0	2.2	9.2e-58	195.2	2.2	1.4	1	0	0	1	1	1	1	FGGY	family	of	carbohydrate	kinases,	C-terminal	domain
BcrAD_BadFG	PF01869.20	gi|345005909|ref|YP_004808762.1|	-	0.002	17.7	0.4	0.14	11.7	0.0	2.2	2	0	0	2	2	2	2	BadF/BadG/BcrA/BcrD	ATPase	family
DUF4338	PF14236.6	gi|345005909|ref|YP_004808762.1|	-	0.15	11.3	0.0	0.31	10.3	0.0	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4338)
DDE_Tnp_IS66	PF03050.14	gi|345005910|ref|YP_004808763.1|	-	7e-49	166.8	0.2	7e-49	166.8	0.2	2.0	2	1	0	2	2	2	1	Transposase	IS66	family
ZapB	PF06005.12	gi|345005910|ref|YP_004808763.1|	-	3e-09	37.2	6.3	9.7e-09	35.6	6.3	1.9	1	0	0	1	1	1	1	Cell	division	protein	ZapB
zf-IS66	PF13005.7	gi|345005910|ref|YP_004808763.1|	-	1.9e-05	25.0	4.3	4.5e-05	23.8	4.3	1.7	1	0	0	1	1	1	1	zinc-finger	binding	domain	of	transposase	IS66
YabA	PF06156.13	gi|345005910|ref|YP_004808763.1|	-	4.3e-05	24.1	4.2	0.00014	22.4	4.2	1.8	1	0	0	1	1	1	1	Initiation	control	protein	YabA
CASP_C	PF08172.12	gi|345005910|ref|YP_004808763.1|	-	0.00024	20.6	1.9	0.00039	19.9	1.9	1.2	1	0	0	1	1	1	1	CASP	C	terminal
JIP_LZII	PF16471.5	gi|345005910|ref|YP_004808763.1|	-	0.00056	20.0	3.4	0.0012	19.0	3.4	1.6	1	0	0	1	1	1	1	JNK-interacting	protein	leucine	zipper	II
bZIP_1	PF00170.21	gi|345005910|ref|YP_004808763.1|	-	0.0018	18.3	7.8	0.004	17.2	7.8	1.6	1	0	0	1	1	1	1	bZIP	transcription	factor
DDE_Tnp_IS240	PF13610.6	gi|345005910|ref|YP_004808763.1|	-	0.003	17.8	0.8	0.013	15.7	0.0	2.3	2	1	0	2	2	2	1	DDE	domain
SlyX	PF04102.12	gi|345005910|ref|YP_004808763.1|	-	0.0054	17.3	5.4	0.014	16.0	5.4	1.7	1	0	0	1	1	1	1	SlyX
NUDE_C	PF04880.13	gi|345005910|ref|YP_004808763.1|	-	0.013	16.0	4.4	0.034	14.6	4.4	1.6	1	0	0	1	1	1	0	NUDE	protein,	C-terminal	conserved	region
CCDC106	PF15794.5	gi|345005910|ref|YP_004808763.1|	-	0.02	14.6	3.6	0.042	13.6	3.6	1.4	1	0	0	1	1	1	0	Coiled-coil	domain-containing	protein	106
Cnn_1N	PF07989.11	gi|345005910|ref|YP_004808763.1|	-	0.026	14.7	6.4	0.056	13.6	6.4	1.5	1	0	0	1	1	1	0	Centrosomin	N-terminal	motif	1
SKA1	PF07160.12	gi|345005910|ref|YP_004808763.1|	-	0.029	14.2	0.9	0.057	13.3	0.9	1.4	1	0	0	1	1	1	0	Spindle	and	kinetochore-associated	protein	1
CENP-H	PF05837.12	gi|345005910|ref|YP_004808763.1|	-	0.03	14.7	3.3	0.072	13.5	3.3	1.6	1	0	0	1	1	1	0	Centromere	protein	H	(CENP-H)
DUF4201	PF13870.6	gi|345005910|ref|YP_004808763.1|	-	0.039	13.7	3.6	0.078	12.7	3.6	1.5	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4201)
RP-C_C	PF11800.8	gi|345005910|ref|YP_004808763.1|	-	0.04	14.0	1.2	0.082	13.0	1.2	1.5	1	0	0	1	1	1	0	Replication	protein	C	C-terminal	region
V_ATPase_I	PF01496.19	gi|345005910|ref|YP_004808763.1|	-	0.049	11.6	2.1	0.07	11.1	2.1	1.1	1	0	0	1	1	1	0	V-type	ATPase	116kDa	subunit	family
HSBP1	PF06825.12	gi|345005910|ref|YP_004808763.1|	-	0.06	13.2	0.3	0.11	12.3	0.3	1.4	1	0	0	1	1	1	0	Heat	shock	factor	binding	protein	1
XhlA	PF10779.9	gi|345005910|ref|YP_004808763.1|	-	0.067	13.4	5.8	0.18	12.0	5.8	1.7	1	0	0	1	1	1	0	Haemolysin	XhlA
FlaC_arch	PF05377.11	gi|345005910|ref|YP_004808763.1|	-	0.072	13.5	3.1	0.17	12.3	3.1	1.6	1	0	0	1	1	1	0	Flagella	accessory	protein	C	(FlaC)
TSC22	PF01166.18	gi|345005910|ref|YP_004808763.1|	-	0.087	13.1	14.9	0.11	12.8	7.5	3.3	2	1	1	3	3	3	0	TSC-22/dip/bun	family
HOOK	PF05622.12	gi|345005910|ref|YP_004808763.1|	-	0.093	10.9	3.9	0.13	10.3	3.9	1.1	1	0	0	1	1	1	0	HOOK	protein
GAS	PF13851.6	gi|345005910|ref|YP_004808763.1|	-	0.12	11.8	6.2	0.21	10.9	6.2	1.3	1	0	0	1	1	1	0	Growth-arrest	specific	micro-tubule	binding
DUF4988	PF16378.5	gi|345005910|ref|YP_004808763.1|	-	0.14	11.8	3.3	0.89	9.2	1.5	2.2	2	0	0	2	2	2	0	Domain	of	unknown	function
HALZ	PF02183.18	gi|345005910|ref|YP_004808763.1|	-	0.2	11.9	7.1	0.26	11.6	6.1	1.8	2	0	0	2	2	1	0	Homeobox	associated	leucine	zipper
EMP24_GP25L	PF01105.24	gi|345005910|ref|YP_004808763.1|	-	0.24	11.3	5.2	4.1	7.3	4.2	2.2	2	0	0	2	2	2	0	emp24/gp25L/p24	family/GOLD
Synaptobrevin	PF00957.21	gi|345005910|ref|YP_004808763.1|	-	0.25	11.1	1.7	0.43	10.4	1.7	1.3	1	0	0	1	1	1	0	Synaptobrevin
Spc24	PF08286.11	gi|345005910|ref|YP_004808763.1|	-	0.27	11.5	3.5	0.57	10.5	3.5	1.5	1	0	0	1	1	1	0	Spc24	subunit	of	Ndc80
DivIC	PF04977.15	gi|345005910|ref|YP_004808763.1|	-	0.31	10.8	8.4	0.77	9.6	8.0	1.9	1	1	0	1	1	1	0	Septum	formation	initiator
SpoVR	PF04293.13	gi|345005910|ref|YP_004808763.1|	-	0.35	9.5	4.7	0.55	8.9	4.7	1.2	1	0	0	1	1	1	0	SpoVR	like	protein
Shugoshin_N	PF07558.11	gi|345005910|ref|YP_004808763.1|	-	0.62	10.0	6.8	0.15	11.9	2.5	2.0	1	1	1	2	2	2	0	Shugoshin	N-terminal	coiled-coil	region
Jnk-SapK_ap_N	PF09744.9	gi|345005910|ref|YP_004808763.1|	-	0.68	10.1	7.3	1.9	8.7	7.3	1.7	1	0	0	1	1	1	0	JNK_SAPK-associated	protein-1
Chibby	PF14645.6	gi|345005910|ref|YP_004808763.1|	-	0.7	10.3	4.1	1.7	9.1	4.1	1.6	1	0	0	1	1	1	0	Chibby	family
APG6_N	PF17675.1	gi|345005910|ref|YP_004808763.1|	-	0.77	10.3	9.2	1.5	9.3	9.2	1.5	1	0	0	1	1	1	0	Apg6	coiled-coil	region
ADIP	PF11559.8	gi|345005910|ref|YP_004808763.1|	-	0.78	9.8	7.1	1.7	8.7	7.1	1.5	1	0	0	1	1	1	0	Afadin-	and	alpha	-actinin-Binding
Prefoldin_2	PF01920.20	gi|345005910|ref|YP_004808763.1|	-	0.92	9.5	8.3	1.8	8.6	8.3	1.4	1	0	0	1	1	1	0	Prefoldin	subunit
bZIP_2	PF07716.15	gi|345005910|ref|YP_004808763.1|	-	1.2	9.3	14.7	8.7	6.5	6.5	2.6	1	1	1	2	2	2	0	Basic	region	leucine	zipper
GIT_CC	PF16559.5	gi|345005910|ref|YP_004808763.1|	-	1.2	9.0	5.9	2.4	8.1	5.9	1.5	1	0	0	1	1	1	0	GIT	coiled-coil	Rho	guanine	nucleotide	exchange	factor
GrpE	PF01025.19	gi|345005910|ref|YP_004808763.1|	-	1.2	8.8	5.5	2.3	7.9	5.5	1.4	1	0	0	1	1	1	0	GrpE
DUF2205	PF10224.9	gi|345005910|ref|YP_004808763.1|	-	1.5	8.9	5.6	3.6	7.7	5.6	1.6	1	0	0	1	1	1	0	Short	coiled-coil	protein
Astro_capsid_p	PF12226.8	gi|345005910|ref|YP_004808763.1|	-	1.5	7.9	4.8	2.3	7.3	4.8	1.2	1	0	0	1	1	1	0	Turkey	astrovirus	capsid	protein
DUF3552	PF12072.8	gi|345005910|ref|YP_004808763.1|	-	2.1	7.7	7.5	3.7	6.9	7.5	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3552)
DUF3450	PF11932.8	gi|345005910|ref|YP_004808763.1|	-	2.3	7.4	8.2	0.46	9.8	3.0	2.3	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF3450)
NRBF2	PF08961.10	gi|345005910|ref|YP_004808763.1|	-	2.4	7.7	14.9	0.031	13.9	7.5	1.6	2	0	0	2	2	1	0	Nuclear	receptor-binding	factor	2,	autophagy	regulator
UPF0242	PF06785.11	gi|345005910|ref|YP_004808763.1|	-	7.3	6.6	7.8	2.4	8.2	5.0	1.6	2	0	0	2	2	1	0	Uncharacterised	protein	family	(UPF0242)	N-terminus
NOG1_N	PF17835.1	gi|345005911|ref|YP_004808764.1|	-	1.2e-42	145.6	0.0	2e-42	144.9	0.0	1.4	1	0	0	1	1	1	1	NOG1	N-terminal	helical	domain
NOG1	PF06858.14	gi|345005911|ref|YP_004808764.1|	-	6.5e-25	86.7	0.0	1.8e-24	85.3	0.0	1.8	2	0	0	2	2	2	1	Nucleolar	GTP-binding	protein	1	(NOG1)
MMR_HSR1	PF01926.23	gi|345005911|ref|YP_004808764.1|	-	1.4e-22	80.0	0.0	2.6e-22	79.0	0.0	1.5	1	0	0	1	1	1	1	50S	ribosome-binding	GTPase
FeoB_N	PF02421.18	gi|345005911|ref|YP_004808764.1|	-	1.4e-13	50.7	0.0	2.1e-13	50.1	0.0	1.3	1	0	0	1	1	1	1	Ferrous	iron	transport	protein	B
Dynamin_N	PF00350.23	gi|345005911|ref|YP_004808764.1|	-	1.2e-06	28.7	0.1	0.026	14.6	0.0	2.8	2	1	1	3	3	3	2	Dynamin	family
GTP_EFTU	PF00009.27	gi|345005911|ref|YP_004808764.1|	-	0.00018	21.1	0.0	0.0016	18.0	0.0	2.4	1	1	1	2	2	2	1	Elongation	factor	Tu	GTP	binding	domain
AIG1	PF04548.16	gi|345005911|ref|YP_004808764.1|	-	0.00046	19.6	0.0	0.00071	19.0	0.0	1.4	1	0	0	1	1	1	1	AIG1	family
RsgA_GTPase	PF03193.16	gi|345005911|ref|YP_004808764.1|	-	0.0012	18.7	0.0	0.0068	16.3	0.0	2.1	2	1	0	2	2	2	1	RsgA	GTPase
AAA_16	PF13191.6	gi|345005911|ref|YP_004808764.1|	-	0.0034	17.8	0.1	0.068	13.5	0.0	2.2	1	1	1	2	2	2	1	AAA	ATPase	domain
DUF2451	PF10474.9	gi|345005911|ref|YP_004808764.1|	-	0.018	14.8	0.2	0.037	13.8	0.0	1.5	2	0	0	2	2	2	0	Protein	of	unknown	function	C-terminus	(DUF2451)
SRPRB	PF09439.10	gi|345005911|ref|YP_004808764.1|	-	0.022	14.2	0.0	0.059	12.8	0.0	1.7	1	1	0	1	1	1	0	Signal	recognition	particle	receptor	beta	subunit
cobW	PF02492.19	gi|345005911|ref|YP_004808764.1|	-	0.071	12.7	0.0	7.1	6.2	0.0	2.5	1	1	0	2	2	2	0	CobW/HypB/UreG,	nucleotide-binding	domain
DUF1706	PF08020.11	gi|345005911|ref|YP_004808764.1|	-	0.092	12.7	0.0	0.22	11.4	0.0	1.6	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1706)
SIMPL	PF04402.14	gi|345005912|ref|YP_004808765.1|	-	3.4e-42	145.2	12.1	4.2e-42	144.9	12.1	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF541)
Mak_N_cap	PF18085.1	gi|345005912|ref|YP_004808765.1|	-	0.13	13.3	2.5	0.18	12.8	0.4	2.2	2	1	0	2	2	2	0	Maltokinase	N-terminal	cap	domain
DUF389	PF04087.14	gi|345005913|ref|YP_004808766.1|	-	2.2e-34	118.5	15.6	2.2e-34	118.5	15.6	2.1	3	0	0	3	3	3	1	Domain	of	unknown	function	(DUF389)
DUF5305	PF17231.2	gi|345005913|ref|YP_004808766.1|	-	0.11	11.9	0.0	0.45	9.9	0.0	2.1	2	0	0	2	2	2	0	Family	of	unknown	function	(DUF5305)
TrkA_C	PF02080.21	gi|345005914|ref|YP_004808767.1|	-	1.9e-13	50.0	0.1	6.3e-13	48.4	0.0	1.8	2	0	0	2	2	2	1	TrkA-C	domain
Na_H_Exchanger	PF00999.21	gi|345005915|ref|YP_004808768.1|	-	7.8e-46	156.6	48.2	9.9e-46	156.2	48.2	1.0	1	0	0	1	1	1	1	Sodium/hydrogen	exchanger	family
ATP19	PF11022.8	gi|345005915|ref|YP_004808768.1|	-	1.8	9.0	3.7	33	5.0	0.2	3.2	2	1	0	2	2	2	0	ATP	synthase	subunit	K
PRC	PF05239.16	gi|345005916|ref|YP_004808769.1|	-	0.0054	16.8	1.1	0.0082	16.2	1.1	1.6	1	1	0	1	1	1	1	PRC-barrel	domain
DUF2171	PF09939.9	gi|345005916|ref|YP_004808769.1|	-	0.0064	16.8	1.5	0.02	15.1	1.5	1.7	1	1	0	1	1	1	1	Uncharacterized	protein	conserved	in	bacteria	(DUF2171)
MMR_HSR1	PF01926.23	gi|345005917|ref|YP_004808770.1|	-	1e-19	70.7	0.0	2e-19	69.8	0.0	1.5	1	0	0	1	1	1	1	50S	ribosome-binding	GTPase
FeoB_N	PF02421.18	gi|345005917|ref|YP_004808770.1|	-	2.7e-13	49.7	0.2	3.9e-12	46.0	0.2	2.0	1	1	0	1	1	1	1	Ferrous	iron	transport	protein	B
RsgA_GTPase	PF03193.16	gi|345005917|ref|YP_004808770.1|	-	6.4e-06	26.2	0.0	0.017	15.0	0.0	2.3	2	0	0	2	2	2	2	RsgA	GTPase
GTP_EFTU	PF00009.27	gi|345005917|ref|YP_004808770.1|	-	1.2e-05	25.0	0.0	0.0015	18.1	0.0	2.3	2	0	0	2	2	2	1	Elongation	factor	Tu	GTP	binding	domain
Dynamin_N	PF00350.23	gi|345005917|ref|YP_004808770.1|	-	0.0019	18.3	0.0	0.0078	16.3	0.0	1.8	1	1	1	2	2	2	1	Dynamin	family
Roc	PF08477.13	gi|345005917|ref|YP_004808770.1|	-	0.0021	18.3	0.0	0.0044	17.2	0.0	1.5	1	0	0	1	1	1	1	Ras	of	Complex,	Roc,	domain	of	DAPkinase
ABC_tran	PF00005.27	gi|345005917|ref|YP_004808770.1|	-	0.0026	18.3	0.1	0.0056	17.2	0.1	1.7	1	1	0	1	1	1	1	ABC	transporter
TIP49	PF06068.13	gi|345005917|ref|YP_004808770.1|	-	0.0041	16.4	0.3	0.0041	16.4	0.3	1.4	2	0	0	2	2	2	1	TIP49	P-loop	domain
AIG1	PF04548.16	gi|345005917|ref|YP_004808770.1|	-	0.0061	15.9	0.0	0.0073	15.7	0.0	1.3	1	0	0	1	1	1	1	AIG1	family
Ras	PF00071.22	gi|345005917|ref|YP_004808770.1|	-	0.0079	15.8	0.0	0.018	14.7	0.0	1.6	1	0	0	1	1	1	1	Ras	family
AAA_18	PF13238.6	gi|345005917|ref|YP_004808770.1|	-	0.031	14.8	0.0	0.057	14.0	0.0	1.5	1	1	0	1	1	1	0	AAA	domain
Arf	PF00025.21	gi|345005917|ref|YP_004808770.1|	-	0.039	13.4	0.0	0.31	10.5	0.0	2.0	2	0	0	2	2	2	0	ADP-ribosylation	factor	family
Guanylate_kin	PF00625.21	gi|345005917|ref|YP_004808770.1|	-	0.066	12.9	0.0	0.12	12.1	0.0	1.3	1	0	0	1	1	1	0	Guanylate	kinase
AAA_21	PF13304.6	gi|345005917|ref|YP_004808770.1|	-	0.069	12.9	0.0	0.081	12.7	0.0	1.3	1	1	0	1	1	1	0	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_22	PF13401.6	gi|345005917|ref|YP_004808770.1|	-	0.11	12.8	0.1	0.39	11.0	0.1	2.0	1	1	0	1	1	1	0	AAA	domain
MeaB	PF03308.16	gi|345005917|ref|YP_004808770.1|	-	0.14	11.1	0.1	7.5	5.4	0.1	2.2	2	0	0	2	2	2	0	Methylmalonyl	Co-A	mutase-associated	GTPase	MeaB
AAA_29	PF13555.6	gi|345005917|ref|YP_004808770.1|	-	0.16	11.7	0.0	0.29	10.9	0.0	1.4	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
PduV-EutP	PF10662.9	gi|345005917|ref|YP_004808770.1|	-	0.17	11.7	0.1	0.48	10.2	0.0	1.7	2	0	0	2	2	2	0	Ethanolamine	utilisation	-	propanediol	utilisation
RNA_helicase	PF00910.22	gi|345005917|ref|YP_004808770.1|	-	0.17	12.3	0.0	0.32	11.4	0.0	1.5	1	0	0	1	1	1	0	RNA	helicase
MutS_V	PF00488.21	gi|345005918|ref|YP_004808771.1|	-	5.3e-80	267.9	0.0	1.1e-79	266.8	0.0	1.5	1	0	0	1	1	1	1	MutS	domain	V
MutS_III	PF05192.18	gi|345005918|ref|YP_004808771.1|	-	4.3e-37	128.2	4.1	9.7e-37	127.0	4.1	1.6	1	0	0	1	1	1	1	MutS	domain	III
MutS_I	PF01624.20	gi|345005918|ref|YP_004808771.1|	-	1.2e-31	109.2	0.0	3.9e-31	107.6	0.0	1.8	2	0	0	2	2	2	1	MutS	domain	I
MutS_IV	PF05190.18	gi|345005918|ref|YP_004808771.1|	-	4e-30	104.0	0.7	9.2e-30	102.9	0.1	2.0	2	0	0	2	2	2	1	MutS	family	domain	IV
MutS_II	PF05188.17	gi|345005918|ref|YP_004808771.1|	-	7.1e-11	42.5	0.0	3.5e-10	40.3	0.0	2.1	1	1	0	1	1	1	1	MutS	domain	II
AAA_29	PF13555.6	gi|345005918|ref|YP_004808771.1|	-	0.04	13.7	0.0	0.091	12.5	0.0	1.5	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
AAA_23	PF13476.6	gi|345005918|ref|YP_004808771.1|	-	0.15	12.5	0.0	1.9	8.9	0.0	2.4	2	0	0	2	2	2	0	AAA	domain
zf-ribbon_3	PF13248.6	gi|345005919|ref|YP_004808772.1|	-	0.033	13.6	2.3	2.8	7.5	0.4	2.5	2	0	0	2	2	2	0	zinc-ribbon	domain
Nudix_N_2	PF14803.6	gi|345005919|ref|YP_004808772.1|	-	0.044	13.7	1.5	0.34	10.8	1.5	2.4	1	1	0	1	1	1	0	Nudix	N-terminal
Zn-ribbon_8	PF09723.10	gi|345005919|ref|YP_004808772.1|	-	0.076	13.1	2.7	0.22	11.7	2.6	1.8	1	1	1	2	2	2	0	Zinc	ribbon	domain
DZR	PF12773.7	gi|345005919|ref|YP_004808772.1|	-	0.15	12.1	2.7	0.41	10.7	2.7	1.8	1	1	0	1	1	1	0	Double	zinc	ribbon
zf-RRN7	PF11781.8	gi|345005919|ref|YP_004808772.1|	-	0.21	11.3	0.3	0.21	11.3	0.3	2.1	2	0	0	2	2	2	0	Zinc-finger	of	RNA-polymerase	I-specific	TFIIB,	Rrn7
Rubredoxin_2	PF18073.1	gi|345005919|ref|YP_004808772.1|	-	0.9	9.3	6.7	5.2	6.9	1.1	2.2	2	0	0	2	2	2	0	Rubredoxin	metal	binding	domain
Glyoxalase_2	PF12681.7	gi|345005920|ref|YP_004808773.1|	-	0.11	12.5	0.0	0.16	11.9	0.0	1.2	1	0	0	1	1	1	0	Glyoxalase-like	domain
Radical_SAM	PF04055.21	gi|345005921|ref|YP_004808774.1|	-	7.5e-24	85.0	0.2	1.7e-23	83.9	0.1	1.7	2	0	0	2	2	2	1	Radical	SAM	superfamily
UPF0004	PF00919.20	gi|345005921|ref|YP_004808774.1|	-	1e-18	67.2	0.1	2.3e-18	66.0	0.1	1.6	1	0	0	1	1	1	1	Uncharacterized	protein	family	UPF0004
TRAM	PF01938.20	gi|345005921|ref|YP_004808774.1|	-	0.0011	18.9	0.2	0.0037	17.2	0.2	2.0	1	0	0	1	1	1	1	TRAM	domain
Herpes_IE2_3	PF03361.14	gi|345005921|ref|YP_004808774.1|	-	0.0081	16.1	0.0	0.015	15.2	0.0	1.3	1	0	0	1	1	1	1	Herpes	virus	intermediate/early	protein	2/3
RPE65	PF03055.15	gi|345005923|ref|YP_004808776.1|	-	7.6e-107	358.4	0.0	8.6e-107	358.2	0.0	1.0	1	0	0	1	1	1	1	Retinal	pigment	epithelial	membrane	protein
Cation_efflux	PF01545.21	gi|345005924|ref|YP_004808777.1|	-	2.1e-41	141.9	3.6	2.7e-41	141.5	3.6	1.1	1	0	0	1	1	1	1	Cation	efflux	family
ZT_dimer	PF16916.5	gi|345005924|ref|YP_004808777.1|	-	8.5e-21	73.9	4.8	1.3e-20	73.3	4.8	1.2	1	0	0	1	1	1	1	Dimerisation	domain	of	Zinc	Transporter
HIT	PF01230.23	gi|345005925|ref|YP_004808778.1|	-	7.7e-12	45.8	0.0	1.5e-11	44.9	0.0	1.4	2	0	0	2	2	2	1	HIT	domain
CwfJ_C_1	PF04677.15	gi|345005925|ref|YP_004808778.1|	-	0.00032	20.5	0.0	0.0005	19.9	0.0	1.2	1	0	0	1	1	1	1	Protein	similar	to	CwfJ	C-terminus	1
DcpS_C	PF11969.8	gi|345005925|ref|YP_004808778.1|	-	0.0079	16.7	0.0	0.013	16.0	0.0	1.3	1	0	0	1	1	1	1	Scavenger	mRNA	decapping	enzyme	C-term	binding
DUF2653	PF10850.8	gi|345005926|ref|YP_004808779.1|	-	0.00094	19.3	0.5	0.0021	18.3	0.4	1.6	1	1	1	2	2	2	1	Protein	of	unknown	function	(DUF2653)
RHH_1	PF01402.21	gi|345005926|ref|YP_004808779.1|	-	0.0015	18.4	2.5	0.0018	18.2	0.1	2.3	3	0	0	3	3	3	1	Ribbon-helix-helix	protein,	copG	family
VapB_antitoxin	PF09957.9	gi|345005926|ref|YP_004808779.1|	-	0.0067	16.3	4.7	0.013	15.4	0.7	2.6	1	1	1	2	2	2	1	Bacterial	antitoxin	of	type	II	TA	system,	VapB
DUF1160	PF06648.11	gi|345005926|ref|YP_004808779.1|	-	0.011	15.7	0.1	0.014	15.4	0.1	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1160)
HicB_lk_antitox	PF15919.5	gi|345005926|ref|YP_004808779.1|	-	0.038	14.1	0.0	0.084	13.0	0.0	1.5	1	0	0	1	1	1	0	HicB_like	antitoxin	of	bacterial	toxin-antitoxin	system
PSK_trans_fac	PF07704.11	gi|345005926|ref|YP_004808779.1|	-	0.045	14.5	4.7	0.13	13.0	4.7	1.8	1	1	0	1	1	1	0	Rv0623-like	transcription	factor
PIN_9	PF18477.1	gi|345005927|ref|YP_004808780.1|	-	0.0022	18.3	1.6	0.012	15.9	1.1	2.1	1	1	1	2	2	2	1	PIN	like	domain
DDE_3	PF13358.6	gi|345005928|ref|YP_004808781.1|	-	2.2e-26	92.3	0.0	3.8e-26	91.6	0.0	1.4	1	0	0	1	1	1	1	DDE	superfamily	endonuclease
HTH_32	PF13565.6	gi|345005928|ref|YP_004808781.1|	-	5.7e-15	55.7	1.1	3.1e-14	53.3	0.6	2.5	3	0	0	3	3	3	1	Homeodomain-like	domain
HTH_23	PF13384.6	gi|345005928|ref|YP_004808781.1|	-	2.3e-12	46.3	0.1	8.9e-11	41.3	0.0	2.8	2	1	0	2	2	2	1	Homeodomain-like	domain
HTH_29	PF13551.6	gi|345005928|ref|YP_004808781.1|	-	6.1e-12	45.4	0.5	1.8e-11	43.9	0.5	1.8	2	0	0	2	2	2	1	Winged	helix-turn	helix
HTH_28	PF13518.6	gi|345005928|ref|YP_004808781.1|	-	3.7e-05	23.8	0.2	0.00022	21.3	0.1	2.3	2	0	0	2	2	2	1	Helix-turn-helix	domain
Terminase_5	PF06056.12	gi|345005928|ref|YP_004808781.1|	-	0.02	14.8	0.0	0.067	13.1	0.0	1.9	1	0	0	1	1	1	0	Putative	ATPase	subunit	of	terminase	(gpP-like)
GDE_N	PF12439.8	gi|345005928|ref|YP_004808781.1|	-	0.07	12.5	0.2	0.13	11.7	0.2	1.3	1	0	0	1	1	1	0	Glycogen	debranching	enzyme	N	terminal
HTH_Tnp_Tc3_2	PF01498.18	gi|345005928|ref|YP_004808781.1|	-	0.081	13.2	0.0	0.2	11.9	0.0	1.7	1	0	0	1	1	1	0	Transposase
GTP_EFTU	PF00009.27	gi|345005929|ref|YP_004808782.1|	-	1.2e-31	109.8	0.0	5.7e-31	107.6	0.0	2.1	1	1	0	1	1	1	1	Elongation	factor	Tu	GTP	binding	domain
IF-2	PF11987.8	gi|345005929|ref|YP_004808782.1|	-	3.8e-24	84.8	0.4	7.5e-24	83.9	0.4	1.5	1	0	0	1	1	1	1	Translation-initiation	factor	2
GTP_EFTU_D4	PF14578.6	gi|345005929|ref|YP_004808782.1|	-	2.4e-21	75.4	0.9	4.6e-21	74.5	0.2	1.9	2	0	0	2	2	2	1	Elongation	factor	Tu	domain	4
GTP_EFTU_D2	PF03144.25	gi|345005929|ref|YP_004808782.1|	-	5.9e-10	39.4	8.0	1e-07	32.2	0.1	3.6	3	0	0	3	3	3	2	Elongation	factor	Tu	domain	2
MMR_HSR1	PF01926.23	gi|345005929|ref|YP_004808782.1|	-	3.2e-08	33.7	0.2	1.5e-07	31.5	0.0	2.2	2	1	0	2	2	2	1	50S	ribosome-binding	GTPase
Dynamin_N	PF00350.23	gi|345005929|ref|YP_004808782.1|	-	0.0033	17.5	0.8	0.27	11.3	0.0	2.8	2	1	0	3	3	3	1	Dynamin	family
Roc	PF08477.13	gi|345005929|ref|YP_004808782.1|	-	0.042	14.1	0.0	0.29	11.4	0.0	2.2	2	0	0	2	2	2	0	Ras	of	Complex,	Roc,	domain	of	DAPkinase
ATP_bind_1	PF03029.17	gi|345005929|ref|YP_004808782.1|	-	0.07	12.9	0.0	0.16	11.7	0.0	1.7	1	0	0	1	1	1	0	Conserved	hypothetical	ATP	binding	protein
PRC	PF05239.16	gi|345005930|ref|YP_004808783.1|	-	1e-09	38.3	0.1	1.4e-09	37.9	0.1	1.2	1	0	0	1	1	1	1	PRC-barrel	domain
PIN_6	PF17146.4	gi|345005931|ref|YP_004808784.1|	-	1.5e-11	44.6	0.0	2.9e-11	43.7	0.0	1.4	1	0	0	1	1	1	1	PIN	domain	of	ribonuclease
PIN_5	PF08745.11	gi|345005931|ref|YP_004808784.1|	-	1.6e-05	24.4	0.6	2.9e-05	23.6	0.3	1.5	1	1	1	2	2	2	1	PINc	domain	ribonuclease
HypA	PF01155.19	gi|345005931|ref|YP_004808784.1|	-	3.6e-05	23.7	0.0	5.7e-05	23.1	0.0	1.3	1	0	0	1	1	1	1	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
Zn-ribbon_8	PF09723.10	gi|345005931|ref|YP_004808784.1|	-	0.00052	20.1	1.6	0.0013	18.8	1.6	1.7	1	0	0	1	1	1	1	Zinc	ribbon	domain
PIN	PF01850.21	gi|345005931|ref|YP_004808784.1|	-	0.014	15.9	1.2	0.42	11.1	0.4	2.1	1	1	1	2	2	2	0	PIN	domain
DZR	PF12773.7	gi|345005931|ref|YP_004808784.1|	-	0.021	14.8	1.7	0.034	14.2	1.7	1.2	1	0	0	1	1	1	0	Double	zinc	ribbon
zf-C3HC4_3	PF13920.6	gi|345005931|ref|YP_004808784.1|	-	0.026	14.4	0.5	0.039	13.8	0.5	1.2	1	0	0	1	1	1	0	Zinc	finger,	C3HC4	type	(RING	finger)
zinc-ribbons_6	PF07191.12	gi|345005931|ref|YP_004808784.1|	-	0.027	14.5	0.3	0.041	13.8	0.3	1.3	1	0	0	1	1	1	0	zinc-ribbons
NOB1_Zn_bind	PF08772.11	gi|345005931|ref|YP_004808784.1|	-	0.039	14.1	0.6	0.067	13.4	0.6	1.3	1	0	0	1	1	1	0	Nin	one	binding	(NOB1)	Zn-ribbon	like
zinc_ribbon_15	PF17032.5	gi|345005931|ref|YP_004808784.1|	-	0.04	14.7	0.1	0.053	14.3	0.1	1.2	1	0	0	1	1	1	0	zinc-ribbon	family
DUF4411	PF14367.6	gi|345005931|ref|YP_004808784.1|	-	0.044	13.7	0.0	0.13	12.1	0.0	1.9	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4411)
Rad50_zn_hook	PF04423.14	gi|345005931|ref|YP_004808784.1|	-	0.063	13.1	4.4	0.19	11.6	0.7	2.5	2	1	1	3	3	3	0	Rad50	zinc	hook	motif
C1_2	PF03107.16	gi|345005931|ref|YP_004808784.1|	-	0.071	13.4	0.2	0.12	12.8	0.2	1.4	1	0	0	1	1	1	0	C1	domain
DNA_ligase_ZBD	PF03119.16	gi|345005931|ref|YP_004808784.1|	-	0.086	12.9	0.4	0.24	11.4	0.0	1.9	2	0	0	2	2	2	0	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
zf-C2HC_2	PF13913.6	gi|345005931|ref|YP_004808784.1|	-	0.1	12.5	6.9	0.13	12.2	0.4	2.3	1	1	1	2	2	2	0	zinc-finger	of	a	C2HC-type
PIN_4	PF13638.6	gi|345005931|ref|YP_004808784.1|	-	0.11	12.8	0.1	0.57	10.5	0.1	2.0	1	1	0	1	1	1	0	PIN	domain
Mut7-C	PF01927.16	gi|345005931|ref|YP_004808784.1|	-	0.11	12.6	0.0	0.16	12.1	0.0	1.4	1	0	0	1	1	1	0	Mut7-C	RNAse	domain
Prok-RING_4	PF14447.6	gi|345005931|ref|YP_004808784.1|	-	0.13	12.1	1.5	0.25	11.2	1.5	1.5	1	0	0	1	1	1	0	Prokaryotic	RING	finger	family	4
zf-ribbon_3	PF13248.6	gi|345005931|ref|YP_004808784.1|	-	0.23	10.9	1.6	0.42	10.1	1.6	1.4	1	0	0	1	1	1	0	zinc-ribbon	domain
YhfH	PF14149.6	gi|345005931|ref|YP_004808784.1|	-	0.49	10.4	2.5	5.6	7.0	0.5	2.2	1	1	1	2	2	2	0	YhfH-like	protein
CPBP	PF02517.16	gi|345005932|ref|YP_004808785.1|	-	3e-18	66.0	6.3	3e-18	66.0	6.3	2.2	2	1	0	2	2	2	1	CPBP	intramembrane	metalloprotease
PGI	PF00342.19	gi|345005933|ref|YP_004808786.1|	-	1e-27	96.9	0.0	1.3e-25	90.0	0.0	2.1	2	0	0	2	2	2	2	Phosphoglucose	isomerase
DDE_Tnp_IS1595	PF12762.7	gi|345005934|ref|YP_004808787.1|	-	6.4e-13	49.0	0.4	1.4e-12	47.8	0.0	1.8	2	1	0	2	2	2	1	ISXO2-like	transposase	domain
Zn_Tnp_IS1595	PF12760.7	gi|345005934|ref|YP_004808787.1|	-	9.2e-05	22.3	1.0	0.00018	21.4	1.0	1.5	1	0	0	1	1	1	1	Transposase	zinc-ribbon	domain
zf-Sec23_Sec24	PF04810.15	gi|345005934|ref|YP_004808787.1|	-	0.048	13.7	1.4	0.14	12.2	0.2	2.3	3	0	0	3	3	3	0	Sec23/Sec24	zinc	finger
Zn_Tnp_IS1	PF03811.13	gi|345005934|ref|YP_004808787.1|	-	0.37	10.5	4.5	0.11	12.2	1.2	1.8	2	0	0	2	2	2	0	InsA	N-terminal	domain
MFS_1	PF07690.16	gi|345005935|ref|YP_004808788.1|	-	2.6e-10	39.8	7.9	3e-10	39.6	7.9	1.1	1	0	0	1	1	1	1	Major	Facilitator	Superfamily
Sugar_tr	PF00083.24	gi|345005935|ref|YP_004808788.1|	-	0.00035	19.6	1.1	0.00036	19.5	1.1	1.2	1	0	0	1	1	1	1	Sugar	(and	other)	transporter
MFS_3	PF05977.13	gi|345005935|ref|YP_004808788.1|	-	0.0068	14.8	0.1	0.0074	14.7	0.1	1.2	1	0	0	1	1	1	1	Transmembrane	secretion	effector
zf-RNPHF	PF08080.12	gi|345005935|ref|YP_004808788.1|	-	0.13	12.2	0.2	0.31	11.0	0.2	1.6	1	0	0	1	1	1	0	RNPHF	zinc	finger
MFS_1	PF07690.16	gi|345005936|ref|YP_004808789.1|	-	2.5e-13	49.7	26.5	3.2e-13	49.3	26.5	1.1	1	0	0	1	1	1	1	Major	Facilitator	Superfamily
MFS_1_like	PF12832.7	gi|345005936|ref|YP_004808789.1|	-	3e-06	26.4	0.6	3e-06	26.4	0.6	2.1	1	1	0	2	2	2	2	MFS_1	like	family
Bac_luciferase	PF00296.20	gi|345005937|ref|YP_004808790.1|	-	3.4e-71	240.2	0.7	4.1e-71	240.0	0.7	1.0	1	0	0	1	1	1	1	Luciferase-like	monooxygenase
FMN_red	PF03358.15	gi|345005938|ref|YP_004808791.1|	-	1.9e-34	118.7	0.0	2.4e-34	118.3	0.0	1.2	1	0	0	1	1	1	1	NADPH-dependent	FMN	reductase
Flavodoxin_2	PF02525.17	gi|345005938|ref|YP_004808791.1|	-	1e-08	35.1	0.0	1.3e-08	34.8	0.0	1.1	1	0	0	1	1	1	1	Flavodoxin-like	fold
OrfB_Zn_ribbon	PF07282.11	gi|345005943|ref|YP_004808796.1|	-	2.7e-19	68.8	1.2	5.8e-19	67.8	1.2	1.6	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
OrfB_IS605	PF01385.19	gi|345005943|ref|YP_004808796.1|	-	1.5e-06	28.4	0.0	5.6e-06	26.6	0.0	1.9	2	0	0	2	2	2	1	Probable	transposase
IBR	PF01485.21	gi|345005943|ref|YP_004808796.1|	-	2.2	8.6	8.8	0.28	11.4	2.8	2.3	2	0	0	2	2	2	0	IBR	domain,	a	half	RING-finger	domain
2-Hacid_dh_C	PF02826.19	gi|345005944|ref|YP_004808797.1|	-	4e-56	189.2	0.0	7.9e-56	188.2	0.0	1.5	2	0	0	2	2	2	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
2-Hacid_dh	PF00389.30	gi|345005944|ref|YP_004808797.1|	-	1.2e-09	37.9	0.0	1.4e-09	37.7	0.0	1.1	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	catalytic	domain
F420_oxidored	PF03807.17	gi|345005944|ref|YP_004808797.1|	-	5.1e-05	23.8	0.1	0.0013	19.2	0.0	2.5	2	1	1	3	3	3	1	NADP	oxidoreductase	coenzyme	F420-dependent
NAD_binding_2	PF03446.15	gi|345005944|ref|YP_004808797.1|	-	0.0061	16.7	0.0	0.0094	16.1	0.0	1.3	1	0	0	1	1	1	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
IlvN	PF07991.12	gi|345005944|ref|YP_004808797.1|	-	0.015	14.8	0.0	0.027	14.1	0.0	1.4	1	0	0	1	1	1	0	Acetohydroxy	acid	isomeroreductase,	NADPH-binding	domain
AdoHcyase_NAD	PF00670.21	gi|345005944|ref|YP_004808797.1|	-	0.028	14.5	0.0	0.047	13.8	0.0	1.3	1	0	0	1	1	1	0	S-adenosyl-L-homocysteine	hydrolase,	NAD	binding	domain
SelR	PF01641.18	gi|345005945|ref|YP_004808798.1|	-	1.5e-51	173.5	0.3	1.7e-51	173.4	0.3	1.0	1	0	0	1	1	1	1	SelR	domain
Yippee-Mis18	PF03226.14	gi|345005945|ref|YP_004808798.1|	-	0.029	14.6	0.4	0.12	12.6	0.5	1.8	1	1	1	2	2	2	0	Yippee	zinc-binding/DNA-binding	/Mis18,	centromere	assembly
zinc_ribbon_10	PF10058.9	gi|345005945|ref|YP_004808798.1|	-	0.034	13.9	0.2	0.37	10.5	0.1	2.2	2	0	0	2	2	2	0	Predicted	integral	membrane	zinc-ribbon	metal-binding	protein
DUF2757	PF10955.8	gi|345005945|ref|YP_004808798.1|	-	0.047	14.0	0.3	0.081	13.2	0.3	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2757)
HECT_2	PF09814.9	gi|345005945|ref|YP_004808798.1|	-	0.06	12.2	0.1	1.4	7.7	0.0	2.0	1	1	1	2	2	2	0	HECT-like	Ubiquitin-conjugating	enzyme	(E2)-binding
Ribosomal_L37e	PF01907.19	gi|345005945|ref|YP_004808798.1|	-	0.18	12.0	0.2	0.18	12.0	0.2	1.9	2	0	0	2	2	2	0	Ribosomal	protein	L37e
zf-ribbon_3	PF13248.6	gi|345005945|ref|YP_004808798.1|	-	0.5	9.8	3.8	19	4.8	0.2	3.3	3	0	0	3	3	3	0	zinc-ribbon	domain
TF_Zn_Ribbon	PF08271.12	gi|345005945|ref|YP_004808798.1|	-	4.7	6.8	8.8	4.6	6.8	1.1	2.8	3	0	0	3	3	3	0	TFIIB	zinc-binding
HAD_2	PF13419.6	gi|345005946|ref|YP_004808799.1|	-	1.4e-21	77.4	0.0	1.7e-21	77.1	0.0	1.1	1	0	0	1	1	1	1	Haloacid	dehalogenase-like	hydrolase
Hydrolase_like	PF13242.6	gi|345005946|ref|YP_004808799.1|	-	3.4e-11	43.0	0.1	9.1e-11	41.7	0.1	1.8	1	0	0	1	1	1	1	HAD-hyrolase-like
Hydrolase	PF00702.26	gi|345005946|ref|YP_004808799.1|	-	1.8e-09	38.2	1.1	1.8e-07	31.7	1.1	2.2	1	1	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
HAD	PF12710.7	gi|345005946|ref|YP_004808799.1|	-	4.7e-06	27.1	0.5	9.4e-06	26.1	0.5	1.5	1	1	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
5-nucleotidase	PF06189.12	gi|345005946|ref|YP_004808799.1|	-	0.055	12.4	0.1	4.9	6.0	0.0	2.1	2	0	0	2	2	2	0	5'-nucleotidase
Rieske	PF00355.26	gi|345005948|ref|YP_004808801.1|	-	7.7e-14	51.4	0.0	1.3e-13	50.7	0.0	1.4	1	0	0	1	1	1	1	Rieske	[2Fe-2S]	domain
Rieske_2	PF13806.6	gi|345005948|ref|YP_004808801.1|	-	6.4e-09	35.7	0.0	1.3e-08	34.7	0.0	1.5	1	0	0	1	1	1	1	Rieske-like	[2Fe-2S]	domain
CPSase_sm_chain	PF00988.22	gi|345005949|ref|YP_004808802.1|	-	5.7e-35	119.9	0.0	1.7e-34	118.4	0.0	1.8	2	0	0	2	2	2	1	Carbamoyl-phosphate	synthase	small	chain,	CPSase	domain
GATase	PF00117.28	gi|345005949|ref|YP_004808802.1|	-	4.5e-33	114.6	0.0	6e-33	114.2	0.0	1.2	1	0	0	1	1	1	1	Glutamine	amidotransferase	class-I
Peptidase_C26	PF07722.13	gi|345005949|ref|YP_004808802.1|	-	0.0017	18.1	0.3	0.034	13.9	0.4	2.2	1	1	1	2	2	2	1	Peptidase	C26
HTH_AsnC-type	PF13404.6	gi|345005950|ref|YP_004808803.1|	-	1.2e-17	63.4	0.3	6.8e-17	61.0	0.2	2.2	2	0	0	2	2	2	1	AsnC-type	helix-turn-helix	domain
HTH_24	PF13412.6	gi|345005950|ref|YP_004808803.1|	-	1.7e-15	56.3	0.1	4.1e-15	55.1	0.1	1.7	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
AsnC_trans_reg	PF01037.21	gi|345005950|ref|YP_004808803.1|	-	4e-11	42.7	1.0	6.9e-11	42.0	1.0	1.4	1	0	0	1	1	1	1	Lrp/AsnC	ligand	binding	domain
HTH_20	PF12840.7	gi|345005950|ref|YP_004808803.1|	-	4.7e-06	26.6	0.0	8.7e-06	25.7	0.0	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
Sigma70_r4_2	PF08281.12	gi|345005950|ref|YP_004808803.1|	-	1.8e-05	24.3	0.2	0.00019	21.1	0.0	2.3	2	0	0	2	2	2	1	Sigma-70,	region	4
Sigma70_r4	PF04545.16	gi|345005950|ref|YP_004808803.1|	-	0.00022	20.7	0.7	0.00078	18.9	0.3	2.0	2	0	0	2	2	2	1	Sigma-70,	region	4
HTH_IclR	PF09339.10	gi|345005950|ref|YP_004808803.1|	-	0.00044	20.0	0.0	0.00083	19.1	0.0	1.3	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
MarR_2	PF12802.7	gi|345005950|ref|YP_004808803.1|	-	0.0005	19.9	0.5	0.0011	18.8	0.1	1.7	2	0	0	2	2	2	1	MarR	family
MarR	PF01047.22	gi|345005950|ref|YP_004808803.1|	-	0.0013	18.6	0.0	0.0028	17.5	0.0	1.6	1	0	0	1	1	1	1	MarR	family
HTH_DeoR	PF08220.12	gi|345005950|ref|YP_004808803.1|	-	0.0052	16.5	0.1	0.01	15.6	0.1	1.5	1	0	0	1	1	1	1	DeoR-like	helix-turn-helix	domain
HTH_27	PF13463.6	gi|345005950|ref|YP_004808803.1|	-	0.0091	16.5	0.3	0.051	14.1	0.1	2.2	1	1	2	3	3	3	1	Winged	helix	DNA-binding	domain
HTH_Tnp_ISL3	PF13542.6	gi|345005950|ref|YP_004808803.1|	-	0.011	15.1	0.0	0.024	14.0	0.0	1.6	1	0	0	1	1	1	0	Helix-turn-helix	domain	of	transposase	family	ISL3
HTH_23	PF13384.6	gi|345005950|ref|YP_004808803.1|	-	0.011	15.5	0.0	0.02	14.6	0.0	1.5	1	0	0	1	1	1	0	Homeodomain-like	domain
HTH_11	PF08279.12	gi|345005950|ref|YP_004808803.1|	-	0.013	15.5	0.0	0.026	14.4	0.0	1.5	1	0	0	1	1	1	0	HTH	domain
HTH_Mga	PF08280.11	gi|345005950|ref|YP_004808803.1|	-	0.019	15.0	0.0	0.031	14.3	0.0	1.4	1	0	0	1	1	1	0	M	protein	trans-acting	positive	regulator	(MGA)	HTH	domain
GYD	PF08734.11	gi|345005950|ref|YP_004808803.1|	-	0.02	14.8	0.2	0.054	13.4	0.1	1.8	1	1	0	1	1	1	0	GYD	domain
HTH_28	PF13518.6	gi|345005950|ref|YP_004808803.1|	-	0.026	14.6	0.1	0.065	13.4	0.0	1.7	2	0	0	2	2	2	0	Helix-turn-helix	domain
HTH_38	PF13936.6	gi|345005950|ref|YP_004808803.1|	-	0.034	13.9	0.3	0.057	13.2	0.3	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain
TrmB	PF01978.19	gi|345005950|ref|YP_004808803.1|	-	0.036	14.0	0.1	0.09	12.7	0.1	1.7	1	1	1	2	2	2	0	Sugar-specific	transcriptional	regulator	TrmB
HrcA_DNA-bdg	PF03444.15	gi|345005950|ref|YP_004808803.1|	-	0.043	13.5	0.1	0.11	12.2	0.1	1.7	1	1	0	1	1	1	0	Winged	helix-turn-helix	transcription	repressor,	HrcA	DNA-binding
NapD	PF03927.13	gi|345005950|ref|YP_004808803.1|	-	0.059	13.4	1.0	0.11	12.6	1.0	1.4	1	0	0	1	1	1	0	NapD	protein
DUF746	PF05344.11	gi|345005950|ref|YP_004808803.1|	-	0.059	13.2	0.1	0.33	10.8	0.0	2.0	2	0	0	2	2	2	0	Domain	of	Unknown	Function	(DUF746)
DUF325	PF03804.13	gi|345005950|ref|YP_004808803.1|	-	0.16	12.0	0.2	0.32	11.1	0.0	1.5	2	0	0	2	2	1	0	Viral	proteins	of	unknown	function
NUDIX	PF00293.28	gi|345005951|ref|YP_004808804.1|	-	9.8e-12	45.0	1.3	1.2e-11	44.7	1.3	1.1	1	0	0	1	1	1	1	NUDIX	domain
PAS_4	PF08448.10	gi|345005952|ref|YP_004808805.1|	-	1.1e-23	83.6	3.8	4.7e-14	52.6	0.3	3.0	2	0	0	2	2	2	2	PAS	fold
HATPase_c	PF02518.26	gi|345005952|ref|YP_004808805.1|	-	2e-18	66.9	0.0	4.6e-18	65.8	0.0	1.6	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
PAS	PF00989.25	gi|345005952|ref|YP_004808805.1|	-	7.3e-13	48.5	0.1	8.3e-07	29.0	0.0	3.7	4	0	0	4	4	4	2	PAS	fold
GAF	PF01590.26	gi|345005952|ref|YP_004808805.1|	-	1.5e-11	45.1	0.1	3.9e-10	40.5	0.1	2.5	2	0	0	2	2	2	1	GAF	domain
PAS_9	PF13426.7	gi|345005952|ref|YP_004808805.1|	-	2.5e-11	43.7	0.0	3e-09	37.1	0.0	2.6	2	0	0	2	2	2	1	PAS	domain
HisKA	PF00512.25	gi|345005952|ref|YP_004808805.1|	-	5.1e-11	42.4	5.9	7.1e-11	42.0	0.2	3.3	3	0	0	3	3	3	1	His	Kinase	A	(phospho-acceptor)	domain
GAF_2	PF13185.6	gi|345005952|ref|YP_004808805.1|	-	1.6e-08	34.9	4.3	1.5e-07	31.8	0.2	3.6	3	1	0	3	3	3	1	GAF	domain
PAS_3	PF08447.12	gi|345005952|ref|YP_004808805.1|	-	5.7e-06	26.5	0.4	0.00014	22.0	0.0	2.8	2	0	0	2	2	2	1	PAS	fold
GAF_3	PF13492.6	gi|345005952|ref|YP_004808805.1|	-	6.1e-06	26.6	0.0	1.5e-05	25.3	0.0	1.7	1	0	0	1	1	1	1	GAF	domain
PAS_8	PF13188.7	gi|345005952|ref|YP_004808805.1|	-	1.8e-05	24.7	0.1	0.00037	20.5	0.0	2.8	2	0	0	2	2	2	1	PAS	domain
HATPase_c_2	PF13581.6	gi|345005952|ref|YP_004808805.1|	-	0.00011	22.2	0.2	0.00026	20.9	0.2	1.7	1	0	0	1	1	1	1	Histidine	kinase-like	ATPase	domain
PAS_7	PF12860.7	gi|345005952|ref|YP_004808805.1|	-	0.033	14.4	0.1	15	5.7	0.0	3.5	2	1	0	2	2	2	0	PAS	fold
HATPase_c_5	PF14501.6	gi|345005952|ref|YP_004808805.1|	-	0.06	13.3	0.0	0.15	12.0	0.0	1.7	1	0	0	1	1	1	0	GHKL	domain
DUF4064	PF13273.6	gi|345005953|ref|YP_004808806.1|	-	0.63	10.4	3.5	4	7.8	1.3	2.0	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF4064)
ADH_zinc_N	PF00107.26	gi|345005954|ref|YP_004808807.1|	-	2.2e-33	115.0	0.3	3.4e-33	114.4	0.3	1.3	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
ADH_N	PF08240.12	gi|345005954|ref|YP_004808807.1|	-	2e-26	92.0	0.5	4.6e-26	90.8	0.5	1.6	1	0	0	1	1	1	1	Alcohol	dehydrogenase	GroES-like	domain
ADH_zinc_N_2	PF13602.6	gi|345005954|ref|YP_004808807.1|	-	6.7e-23	82.2	0.0	1.4e-22	81.2	0.0	1.5	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
AlaDh_PNT_C	PF01262.21	gi|345005954|ref|YP_004808807.1|	-	0.0039	16.5	0.6	0.0081	15.5	0.6	1.6	1	0	0	1	1	1	1	Alanine	dehydrogenase/PNT,	C-terminal	domain
DapB_N	PF01113.20	gi|345005954|ref|YP_004808807.1|	-	0.017	15.2	0.4	0.035	14.2	0.4	1.4	1	0	0	1	1	1	0	Dihydrodipicolinate	reductase,	N-terminus
adh_short	PF00106.25	gi|345005954|ref|YP_004808807.1|	-	0.029	13.8	0.3	0.045	13.2	0.3	1.3	1	0	0	1	1	1	0	short	chain	dehydrogenase
MoCF_biosynth	PF00994.24	gi|345005955|ref|YP_004808808.1|	-	4.9e-30	104.1	0.8	6.5e-30	103.7	0.8	1.1	1	0	0	1	1	1	1	Probable	molybdopterin	binding	domain
Herpes_US12	PF05363.12	gi|345005956|ref|YP_004808809.1|	-	0.0083	16.8	0.4	0.025	15.3	0.1	2.0	2	0	0	2	2	2	1	Herpesvirus	US12	family
Bclx_interact	PF08945.10	gi|345005957|ref|YP_004808810.1|	-	0.11	12.3	0.5	0.19	11.5	0.5	1.4	1	0	0	1	1	1	0	Bcl-x	interacting,	BH3	domain
ocr	PF08684.10	gi|345005957|ref|YP_004808810.1|	-	0.11	13.0	0.0	0.13	12.7	0.0	1.3	1	1	0	1	1	1	0	DNA	mimic	ocr
UbiA	PF01040.18	gi|345005958|ref|YP_004808811.1|	-	7.2e-12	45.1	21.3	7.2e-12	45.1	21.3	2.5	1	1	1	2	2	2	1	UbiA	prenyltransferase	family
FUSC-like	PF12805.7	gi|345005958|ref|YP_004808811.1|	-	0.069	12.2	0.1	0.069	12.2	0.1	2.6	3	0	0	3	3	3	0	FUSC-like	inner	membrane	protein	yccS
PRC	PF05239.16	gi|345005959|ref|YP_004808812.1|	-	0.022	14.8	0.1	0.031	14.3	0.1	1.3	1	0	0	1	1	1	0	PRC-barrel	domain
GTP_EFTU_D4	PF14578.6	gi|345005959|ref|YP_004808812.1|	-	0.12	12.3	0.0	0.15	12.0	0.0	1.2	1	0	0	1	1	1	0	Elongation	factor	Tu	domain	4
DUF433	PF04255.14	gi|345005961|ref|YP_004808814.1|	-	8.9e-14	51.1	0.3	1.2e-13	50.7	0.3	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF433)
Glyco_trans_1_2	PF13524.6	gi|345005961|ref|YP_004808814.1|	-	0.025	15.0	0.1	0.036	14.5	0.1	1.2	1	0	0	1	1	1	0	Glycosyl	transferases	group	1
DUF4296	PF14129.6	gi|345005961|ref|YP_004808814.1|	-	0.038	14.6	0.0	0.05	14.2	0.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4296)
Glyco_transf_52	PF07922.11	gi|345005961|ref|YP_004808814.1|	-	0.099	11.9	0.1	0.13	11.6	0.1	1.1	1	0	0	1	1	1	0	Glycosyltransferase	family	52
DUF5615	PF18480.1	gi|345005962|ref|YP_004808815.1|	-	0.00018	21.2	0.0	0.00024	20.8	0.0	1.3	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF5615)
AstE_AspA	PF04952.14	gi|345005963|ref|YP_004808816.1|	-	2e-35	122.3	0.0	2.8e-35	121.8	0.0	1.2	1	0	0	1	1	1	1	Succinylglutamate	desuccinylase	/	Aspartoacylase	family
Peptidase_M99	PF17033.5	gi|345005963|ref|YP_004808816.1|	-	0.00046	19.7	0.0	0.00066	19.2	0.0	1.1	1	0	0	1	1	1	1	Carboxypeptidase	controlling	helical	cell	shape	catalytic
Peptidase_M14	PF00246.24	gi|345005963|ref|YP_004808816.1|	-	0.0008	19.3	0.2	0.0022	17.9	0.2	1.6	1	1	0	1	1	1	1	Zinc	carboxypeptidase
Biotin_lipoyl	PF00364.22	gi|345005963|ref|YP_004808816.1|	-	0.023	14.5	0.2	0.054	13.3	0.2	1.6	1	0	0	1	1	1	0	Biotin-requiring	enzyme
DUF1525	PF07511.11	gi|345005963|ref|YP_004808816.1|	-	0.077	13.1	0.0	0.15	12.2	0.0	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1525)
TruB_N	PF01509.18	gi|345005964|ref|YP_004808817.1|	-	2.5e-21	76.6	0.1	2.4e-12	47.5	0.0	3.2	1	1	1	2	2	2	2	TruB	family	pseudouridylate	synthase	(N	terminal	domain)
TruB_C_2	PF16198.5	gi|345005964|ref|YP_004808817.1|	-	2.6e-20	72.3	1.2	5.9e-20	71.2	0.2	2.2	3	0	0	3	3	3	1	tRNA	pseudouridylate	synthase	B	C-terminal	domain
DKCLD	PF08068.12	gi|345005964|ref|YP_004808817.1|	-	2e-09	37.4	0.0	4.6e-09	36.2	0.0	1.6	1	0	0	1	1	1	1	DKCLD	(NUC011)	domain
PUA	PF01472.20	gi|345005964|ref|YP_004808817.1|	-	3.2e-05	23.8	0.1	6.2e-05	22.9	0.1	1.5	1	0	0	1	1	1	1	PUA	domain
DBD_HTH	PF18430.1	gi|345005964|ref|YP_004808817.1|	-	0.0041	16.8	0.0	0.009	15.8	0.0	1.5	1	0	0	1	1	1	1	Putative	DNA-binding	domain
Cytidylate_kin2	PF13189.6	gi|345005965|ref|YP_004808818.1|	-	1.3e-20	74.3	1.1	2.1e-18	67.1	1.1	2.1	1	1	0	1	1	1	1	Cytidylate	kinase-like	family
AAA_18	PF13238.6	gi|345005965|ref|YP_004808818.1|	-	2.8e-16	60.3	0.1	3.7e-16	59.8	0.1	1.2	1	0	0	1	1	1	1	AAA	domain
AAA_17	PF13207.6	gi|345005965|ref|YP_004808818.1|	-	2.1e-13	50.9	0.0	4.1e-13	49.9	0.0	1.5	1	1	0	1	1	1	1	AAA	domain
Cytidylate_kin	PF02224.18	gi|345005965|ref|YP_004808818.1|	-	4.4e-11	42.9	0.6	9e-05	22.3	0.0	2.1	1	1	0	2	2	2	2	Cytidylate	kinase
ADK	PF00406.22	gi|345005965|ref|YP_004808818.1|	-	3e-08	33.9	0.0	8.3e-08	32.5	0.0	1.8	1	1	1	2	2	2	1	Adenylate	kinase
AAA_33	PF13671.6	gi|345005965|ref|YP_004808818.1|	-	3.3e-08	33.8	0.5	2.8e-07	30.8	0.5	2.0	1	1	0	1	1	1	1	AAA	domain
SKI	PF01202.22	gi|345005965|ref|YP_004808818.1|	-	3.9e-05	23.8	0.2	8.3e-05	22.8	0.3	1.5	1	1	0	1	1	1	1	Shikimate	kinase
AAA_28	PF13521.6	gi|345005965|ref|YP_004808818.1|	-	0.0001	22.6	0.4	0.00042	20.6	0.4	2.1	1	1	0	1	1	1	1	AAA	domain
Thymidylate_kin	PF02223.17	gi|345005965|ref|YP_004808818.1|	-	0.00043	20.0	0.1	0.71	9.5	0.0	2.2	2	0	0	2	2	2	2	Thymidylate	kinase
AAA_22	PF13401.6	gi|345005965|ref|YP_004808818.1|	-	0.0029	17.9	0.0	0.0046	17.2	0.0	1.4	1	0	0	1	1	1	1	AAA	domain
AAA	PF00004.29	gi|345005965|ref|YP_004808818.1|	-	0.0061	17.0	0.0	0.01	16.2	0.0	1.5	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
dNK	PF01712.19	gi|345005965|ref|YP_004808818.1|	-	0.012	15.4	0.0	0.23	11.3	0.0	2.3	2	0	0	2	2	2	0	Deoxynucleoside	kinase
AAA_16	PF13191.6	gi|345005965|ref|YP_004808818.1|	-	0.019	15.3	0.9	0.04	14.3	0.9	1.6	1	1	0	1	1	1	0	AAA	ATPase	domain
KTI12	PF08433.10	gi|345005965|ref|YP_004808818.1|	-	0.036	13.5	0.0	0.053	13.0	0.0	1.4	1	0	0	1	1	1	0	Chromatin	associated	protein	KTI12
AAA_5	PF07728.14	gi|345005965|ref|YP_004808818.1|	-	0.067	13.2	0.0	0.14	12.1	0.0	1.6	1	1	0	1	1	1	0	AAA	domain	(dynein-related	subfamily)
Zeta_toxin	PF06414.12	gi|345005965|ref|YP_004808818.1|	-	0.068	12.4	0.0	0.71	9.1	0.0	2.2	2	0	0	2	2	2	0	Zeta	toxin
CoaE	PF01121.20	gi|345005965|ref|YP_004808818.1|	-	0.1	12.3	0.3	9.3	5.9	0.0	2.2	1	1	1	2	2	2	0	Dephospho-CoA	kinase
RNA_helicase	PF00910.22	gi|345005965|ref|YP_004808818.1|	-	0.13	12.6	0.0	0.21	12.0	0.0	1.3	1	0	0	1	1	1	0	RNA	helicase
Methyltransf_11	PF08241.12	gi|345005966|ref|YP_004808819.1|	-	2e-11	44.4	0.0	3.6e-11	43.6	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.6	gi|345005966|ref|YP_004808819.1|	-	2.8e-10	40.7	0.0	5e-10	40.0	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.12	gi|345005966|ref|YP_004808819.1|	-	0.0026	18.5	0.0	0.0042	17.8	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.6	gi|345005966|ref|YP_004808819.1|	-	0.04	13.8	0.0	0.065	13.1	0.0	1.5	1	1	0	1	1	1	0	Methyltransferase	domain
RrnaAD	PF00398.20	gi|345005966|ref|YP_004808819.1|	-	0.046	12.8	0.0	0.075	12.1	0.0	1.2	1	0	0	1	1	1	0	Ribosomal	RNA	adenine	dimethylase
Methyltransf_24	PF13578.6	gi|345005966|ref|YP_004808819.1|	-	0.065	14.3	0.1	0.13	13.3	0.1	1.6	1	0	0	1	1	1	0	Methyltransferase	domain
Methyltransf_PK	PF05891.12	gi|345005966|ref|YP_004808819.1|	-	0.079	12.5	0.0	0.14	11.7	0.0	1.3	1	0	0	1	1	1	0	AdoMet	dependent	proline	di-methyltransferase
Cons_hypoth95	PF03602.15	gi|345005966|ref|YP_004808819.1|	-	0.079	12.6	0.1	0.21	11.2	0.0	1.7	2	0	0	2	2	2	0	Conserved	hypothetical	protein	95
Ubie_methyltran	PF01209.18	gi|345005966|ref|YP_004808819.1|	-	0.12	11.7	0.0	0.18	11.1	0.0	1.2	1	0	0	1	1	1	0	ubiE/COQ5	methyltransferase	family
DNA_methylase	PF00145.17	gi|345005966|ref|YP_004808819.1|	-	0.15	11.4	0.0	0.21	10.9	0.0	1.2	1	0	0	1	1	1	0	C-5	cytosine-specific	DNA	methylase
CMAS	PF02353.20	gi|345005966|ref|YP_004808819.1|	-	0.16	11.3	0.0	0.23	10.7	0.0	1.2	1	0	0	1	1	1	0	Mycolic	acid	cyclopropane	synthetase
MoeA_N	PF03453.17	gi|345005967|ref|YP_004808820.1|	-	5.2e-39	133.5	6.7	9.6e-39	132.7	6.7	1.5	1	0	0	1	1	1	1	MoeA	N-terminal	region	(domain	I	and	II)
MoCF_biosynth	PF00994.24	gi|345005967|ref|YP_004808820.1|	-	4.6e-24	84.7	0.1	1.3e-23	83.3	0.1	1.8	1	1	0	1	1	1	1	Probable	molybdopterin	binding	domain
MoeA_C	PF03454.15	gi|345005967|ref|YP_004808820.1|	-	1.3e-19	70.1	0.4	1.3e-19	70.1	0.4	2.9	2	1	1	3	3	3	1	MoeA	C-terminal	region	(domain	IV)
MoeA_N	PF03453.17	gi|345005968|ref|YP_004808821.1|	-	8.4e-43	145.8	4.6	1.9e-42	144.7	4.6	1.6	1	0	0	1	1	1	1	MoeA	N-terminal	region	(domain	I	and	II)
MoCF_biosynth	PF00994.24	gi|345005968|ref|YP_004808821.1|	-	5e-24	84.6	0.1	9.1e-24	83.8	0.1	1.4	1	0	0	1	1	1	1	Probable	molybdopterin	binding	domain
PBP_like	PF12727.7	gi|345005968|ref|YP_004808821.1|	-	1.3e-22	79.9	0.5	1.3e-21	76.6	0.0	2.5	2	1	0	2	2	2	1	PBP	superfamily	domain
MoeA_C	PF03454.15	gi|345005968|ref|YP_004808821.1|	-	3.9e-16	59.0	0.8	1.3e-15	57.3	0.1	2.3	2	0	0	2	2	2	1	MoeA	C-terminal	region	(domain	IV)
SBP_bac_11	PF13531.6	gi|345005968|ref|YP_004808821.1|	-	0.043	13.6	0.4	0.099	12.4	0.1	1.8	2	0	0	2	2	2	0	Bacterial	extracellular	solute-binding	protein
T4_gp9_10	PF07880.11	gi|345005968|ref|YP_004808821.1|	-	0.18	11.3	0.4	0.54	9.8	0.1	1.9	2	1	1	3	3	3	0	Bacteriophage	T4	gp9/10-like	protein
Lipase_GDSL_2	PF13472.6	gi|345005969|ref|YP_004808822.1|	-	6e-22	78.9	0.3	7.1e-22	78.6	0.3	1.1	1	0	0	1	1	1	1	GDSL-like	Lipase/Acylhydrolase	family
Lipase_GDSL	PF00657.22	gi|345005969|ref|YP_004808822.1|	-	5.6e-08	33.0	0.0	6.9e-08	32.7	0.0	1.1	1	0	0	1	1	1	1	GDSL-like	Lipase/Acylhydrolase
HAD_2	PF13419.6	gi|345005970|ref|YP_004808823.1|	-	2.2e-16	60.5	0.0	2.7e-16	60.2	0.0	1.1	1	0	0	1	1	1	1	Haloacid	dehalogenase-like	hydrolase
HAD	PF12710.7	gi|345005970|ref|YP_004808823.1|	-	4.2e-07	30.6	0.6	6e-07	30.0	0.6	1.2	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Hydrolase	PF00702.26	gi|345005970|ref|YP_004808823.1|	-	4.9e-07	30.2	0.1	3.1e-05	24.4	0.1	2.1	1	1	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Hydrolase_like	PF13242.6	gi|345005970|ref|YP_004808823.1|	-	0.028	14.5	1.7	0.049	13.7	0.1	2.1	3	0	0	3	3	3	0	HAD-hyrolase-like
Pterin_4a	PF01329.19	gi|345005972|ref|YP_004808825.1|	-	3.8e-26	91.1	0.1	4.2e-26	90.9	0.1	1.0	1	0	0	1	1	1	1	Pterin	4	alpha	carbinolamine	dehydratase
IF-2	PF11987.8	gi|345005972|ref|YP_004808825.1|	-	0.13	12.3	0.0	0.21	11.7	0.0	1.2	1	0	0	1	1	1	0	Translation-initiation	factor	2
GlutR_N	PF05201.15	gi|345005973|ref|YP_004808826.1|	-	2.5e-37	127.9	1.7	5.6e-37	126.7	1.7	1.6	1	0	0	1	1	1	1	Glutamyl-tRNAGlu	reductase,	N-terminal	domain
Shikimate_DH	PF01488.20	gi|345005973|ref|YP_004808826.1|	-	2.5e-30	105.3	0.5	2.5e-30	105.3	0.5	1.8	2	0	0	2	2	2	1	Shikimate	/	quinate	5-dehydrogenase
GlutR_dimer	PF00745.20	gi|345005973|ref|YP_004808826.1|	-	5e-20	71.8	0.5	1.3e-19	70.5	0.5	1.7	1	0	0	1	1	1	1	Glutamyl-tRNAGlu	reductase,	dimerisation	domain
2-Hacid_dh_C	PF02826.19	gi|345005973|ref|YP_004808826.1|	-	2.2e-05	23.9	0.2	6.5e-05	22.4	0.2	1.8	1	1	1	2	2	2	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
Glu_dehyd_C	PF16912.5	gi|345005973|ref|YP_004808826.1|	-	2.9e-05	23.6	4.3	2.9e-05	23.6	1.9	2.1	2	0	0	2	2	2	1	Glucose	dehydrogenase	C-terminus
F420_oxidored	PF03807.17	gi|345005973|ref|YP_004808826.1|	-	0.0021	18.6	0.8	0.0021	18.6	0.8	2.6	2	0	0	2	2	2	1	NADP	oxidoreductase	coenzyme	F420-dependent
Sacchrp_dh_NADP	PF03435.18	gi|345005973|ref|YP_004808826.1|	-	0.0072	16.6	0.5	0.0072	16.6	0.5	2.4	2	1	0	2	2	2	1	Saccharopine	dehydrogenase	NADP	binding	domain
NAD_binding_7	PF13241.6	gi|345005973|ref|YP_004808826.1|	-	0.014	15.8	0.8	0.044	14.2	0.8	1.8	1	0	0	1	1	1	0	Putative	NAD(P)-binding
ApbA	PF02558.16	gi|345005973|ref|YP_004808826.1|	-	0.02	14.5	0.1	0.046	13.4	0.1	1.6	1	0	0	1	1	1	0	Ketopantoate	reductase	PanE/ApbA
THF_DHG_CYH_C	PF02882.19	gi|345005973|ref|YP_004808826.1|	-	0.025	13.9	3.0	0.045	13.1	1.6	2.1	2	1	0	2	2	2	0	Tetrahydrofolate	dehydrogenase/cyclohydrolase,	NAD(P)-binding	domain
AdoHcyase_NAD	PF00670.21	gi|345005973|ref|YP_004808826.1|	-	0.029	14.4	0.7	0.065	13.3	0.7	1.5	1	0	0	1	1	1	0	S-adenosyl-L-homocysteine	hydrolase,	NAD	binding	domain
ThiF	PF00899.21	gi|345005973|ref|YP_004808826.1|	-	0.072	12.4	1.0	0.19	11.0	0.2	1.9	2	0	0	2	2	2	0	ThiF	family
zf-C4H2	PF10146.9	gi|345005973|ref|YP_004808826.1|	-	0.078	13.3	0.2	0.14	12.5	0.2	1.3	1	0	0	1	1	1	0	Zinc	finger-containing	protein
FxsA	PF04186.13	gi|345005975|ref|YP_004808828.1|	-	2.1e-35	121.2	5.1	2.6e-35	120.8	5.1	1.1	1	0	0	1	1	1	1	FxsA	cytoplasmic	membrane	protein
SNARE_assoc	PF09335.11	gi|345005975|ref|YP_004808828.1|	-	0.067	13.7	0.8	0.096	13.2	0.8	1.2	1	0	0	1	1	1	0	SNARE	associated	Golgi	protein
Pribosyltran	PF00156.27	gi|345005976|ref|YP_004808829.1|	-	3.2e-13	49.5	0.3	4.7e-13	49.0	0.3	1.2	1	0	0	1	1	1	1	Phosphoribosyl	transferase	domain
UPRTase	PF14681.6	gi|345005976|ref|YP_004808829.1|	-	0.0038	16.7	0.0	0.0052	16.3	0.0	1.2	1	0	0	1	1	1	1	Uracil	phosphoribosyltransferase
Peptidase_M20	PF01546.28	gi|345005977|ref|YP_004808830.1|	-	3.9e-20	72.4	0.2	6.5e-20	71.7	0.2	1.4	1	0	0	1	1	1	1	Peptidase	family	M20/M25/M40
Peptidase_M28	PF04389.17	gi|345005977|ref|YP_004808830.1|	-	1.2e-07	31.7	0.2	7.7e-06	25.7	0.1	2.3	2	0	0	2	2	2	2	Peptidase	family	M28
YccF	PF03733.13	gi|345005979|ref|YP_004808832.1|	-	7.8e-11	42.5	24.1	8e-06	26.5	6.3	2.1	2	0	0	2	2	2	2	Inner	membrane	component	domain
PMSR	PF01625.21	gi|345005980|ref|YP_004808833.1|	-	1.1e-64	217.3	0.1	1.3e-64	217.0	0.1	1.1	1	0	0	1	1	1	1	Peptide	methionine	sulfoxide	reductase
YiaAB	PF05360.14	gi|345005981|ref|YP_004808834.1|	-	1.8	8.8	6.2	0.22	11.8	1.4	1.8	2	0	0	2	2	2	0	yiaA/B	two	helix	domain
Herpes_LMP1	PF05297.11	gi|345005981|ref|YP_004808834.1|	-	2.2	7.4	6.0	2.7	7.1	6.0	1.0	1	0	0	1	1	1	0	Herpesvirus	latent	membrane	protein	1	(LMP1)
GHMP_kinases_N	PF00288.26	gi|345005982|ref|YP_004808835.1|	-	3.4e-13	49.6	4.0	3.4e-13	49.6	4.0	2.0	2	0	0	2	2	2	1	GHMP	kinases	N	terminal	domain
GHMP_kinases_C	PF08544.13	gi|345005982|ref|YP_004808835.1|	-	8.6e-08	32.4	0.1	2.3e-07	31.1	0.1	1.8	1	0	0	1	1	1	1	GHMP	kinases	C	terminal
DnaJ	PF00226.31	gi|345005983|ref|YP_004808836.1|	-	9.8e-11	41.6	0.0	1.5e-10	41.0	0.0	1.3	1	0	0	1	1	1	1	DnaJ	domain
Phage_holin_3_6	PF07332.11	gi|345005983|ref|YP_004808836.1|	-	0.015	15.4	4.7	0.027	14.5	4.7	1.4	1	0	0	1	1	1	0	Putative	Actinobacterial	Holin-X,	holin	superfamily	III
Polysacc_synt_C	PF14667.6	gi|345005983|ref|YP_004808836.1|	-	0.023	14.7	3.5	0.03	14.4	3.5	1.1	1	0	0	1	1	1	0	Polysaccharide	biosynthesis	C-terminal	domain
Pam16	PF03656.13	gi|345005983|ref|YP_004808836.1|	-	0.058	13.4	2.1	0.082	12.9	2.1	1.3	1	0	0	1	1	1	0	Pam16
PspC	PF04024.12	gi|345005983|ref|YP_004808836.1|	-	0.095	12.5	1.3	0.19	11.6	1.3	1.5	1	0	0	1	1	1	0	PspC	domain
DUF4191	PF13829.6	gi|345005983|ref|YP_004808836.1|	-	0.15	11.3	0.4	0.25	10.6	0.4	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4191)
OMPdecase	PF00215.24	gi|345005984|ref|YP_004808837.1|	-	2.6e-31	109.0	0.0	3.5e-31	108.6	0.0	1.1	1	0	0	1	1	1	1	Orotidine	5'-phosphate	decarboxylase	/	HUMPS	family
Pox_A_type_inc	PF04508.12	gi|345005985|ref|YP_004808838.1|	-	5.1e-06	26.1	1.7	9.8e-06	25.2	1.7	1.4	1	0	0	1	1	1	1	Viral	A-type	inclusion	protein	repeat
HalX	PF08663.10	gi|345005985|ref|YP_004808838.1|	-	0.018	15.3	1.7	0.023	15.0	1.7	1.2	1	0	0	1	1	1	0	HalX	domain
End3	PF12761.7	gi|345005985|ref|YP_004808838.1|	-	0.028	14.6	0.6	0.033	14.4	0.6	1.0	1	0	0	1	1	1	0	Actin	cytoskeleton-regulatory	complex	protein	END3
HemX	PF04375.14	gi|345005985|ref|YP_004808838.1|	-	0.11	11.7	0.0	0.13	11.6	0.0	1.0	1	0	0	1	1	1	0	HemX,	putative	uroporphyrinogen-III	C-methyltransferase
DUF4094	PF13334.6	gi|345005985|ref|YP_004808838.1|	-	0.12	12.8	0.5	0.21	12.0	0.4	1.5	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4094)
LapA_dom	PF06305.11	gi|345005985|ref|YP_004808838.1|	-	0.32	10.9	1.3	0.6	10.0	1.3	1.5	1	1	0	1	1	1	0	Lipopolysaccharide	assembly	protein	A	domain
PetM	PF08041.11	gi|345005985|ref|YP_004808838.1|	-	3.5	7.3	10.3	5.8	6.6	10.3	1.3	1	0	0	1	1	1	0	PetM	family	of	cytochrome	b6f	complex	subunit	7
MttA_Hcf106	PF02416.16	gi|345005986|ref|YP_004808839.1|	-	0.0011	18.3	2.3	0.0011	18.3	2.3	2.8	3	1	1	4	4	4	1	mttA/Hcf106	family
LapA_dom	PF06305.11	gi|345005986|ref|YP_004808839.1|	-	0.02	14.7	0.1	0.025	14.4	0.1	1.2	1	0	0	1	1	1	0	Lipopolysaccharide	assembly	protein	A	domain
Amidohydro_3	PF07969.11	gi|345005987|ref|YP_004808840.1|	-	9.6e-88	295.7	10.3	1.1e-87	295.5	10.3	1.0	1	0	0	1	1	1	1	Amidohydrolase	family
Amidohydro_1	PF01979.20	gi|345005987|ref|YP_004808840.1|	-	1.7e-14	53.9	0.0	7.8e-10	38.6	0.0	2.4	2	1	0	2	2	2	2	Amidohydrolase	family
HMG-CoA_red	PF00368.18	gi|345005988|ref|YP_004808841.1|	-	5.1e-125	417.3	13.1	5.8e-125	417.1	13.1	1.0	1	0	0	1	1	1	1	Hydroxymethylglutaryl-coenzyme	A	reductase
Zn-ribbon_8	PF09723.10	gi|345005989|ref|YP_004808842.1|	-	0.013	15.6	0.3	0.028	14.5	0.3	1.6	1	0	0	1	1	1	0	Zinc	ribbon	domain
HypA	PF01155.19	gi|345005989|ref|YP_004808842.1|	-	0.044	13.8	0.5	0.086	12.9	0.5	1.5	1	0	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
TF_Zn_Ribbon	PF08271.12	gi|345005989|ref|YP_004808842.1|	-	0.069	12.7	1.0	0.21	11.1	1.0	1.9	1	0	0	1	1	1	0	TFIIB	zinc-binding
KorB	PF08535.10	gi|345005989|ref|YP_004808842.1|	-	0.089	12.8	0.1	0.33	11.0	0.1	2.0	1	1	0	1	1	1	0	KorB	domain
zf-Di19	PF05605.12	gi|345005989|ref|YP_004808842.1|	-	0.092	13.1	0.0	0.14	12.5	0.0	1.4	1	0	0	1	1	1	0	Drought	induced	19	protein	(Di19),	zinc-binding
Jiv90	PF14901.6	gi|345005989|ref|YP_004808842.1|	-	0.11	12.7	0.5	0.16	12.1	0.5	1.3	1	0	0	1	1	1	0	Cleavage	inducing	molecular	chaperone
OrfB_Zn_ribbon	PF07282.11	gi|345005989|ref|YP_004808842.1|	-	0.23	11.4	3.0	1.2	9.1	3.0	2.2	1	1	1	2	2	2	0	Putative	transposase	DNA-binding	domain
FYDLN_acid	PF09538.10	gi|345005989|ref|YP_004808842.1|	-	2.5	8.8	9.0	11	6.8	9.0	2.0	1	1	0	1	1	1	0	Protein	of	unknown	function	(FYDLN_acid)
zf-RING_7	PF02591.15	gi|345005989|ref|YP_004808842.1|	-	9	6.6	6.9	2.8	8.2	0.5	3.1	4	0	0	4	4	4	0	C4-type	zinc	ribbon	domain
Epimerase	PF01370.21	gi|345005990|ref|YP_004808843.1|	-	4e-20	72.3	0.0	5.5e-20	71.9	0.0	1.2	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
GDP_Man_Dehyd	PF16363.5	gi|345005990|ref|YP_004808843.1|	-	2.7e-12	46.8	0.1	1.4e-11	44.4	0.0	2.0	2	0	0	2	2	2	1	GDP-mannose	4,6	dehydratase
3Beta_HSD	PF01073.19	gi|345005990|ref|YP_004808843.1|	-	5.5e-12	45.3	0.0	8e-12	44.7	0.0	1.2	1	0	0	1	1	1	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
NAD_binding_4	PF07993.12	gi|345005990|ref|YP_004808843.1|	-	9.8e-09	34.8	0.0	1.3e-08	34.4	0.0	1.1	1	0	0	1	1	1	1	Male	sterility	protein
Polysacc_synt_2	PF02719.15	gi|345005990|ref|YP_004808843.1|	-	2e-08	33.7	0.0	1.7e-07	30.7	0.0	2.2	2	1	1	3	3	3	1	Polysaccharide	biosynthesis	protein
NAD_binding_10	PF13460.6	gi|345005990|ref|YP_004808843.1|	-	3.5e-08	33.5	0.0	4.7e-08	33.1	0.0	1.3	1	0	0	1	1	1	1	NAD(P)H-binding
RmlD_sub_bind	PF04321.17	gi|345005990|ref|YP_004808843.1|	-	7.8e-08	31.7	0.3	4.2e-07	29.4	0.2	2.1	2	1	0	2	2	2	1	RmlD	substrate	binding	domain
NmrA	PF05368.13	gi|345005990|ref|YP_004808843.1|	-	0.12	11.9	0.1	0.25	10.9	0.1	1.4	1	1	0	1	1	1	0	NmrA-like	family
tRNA_synthFbeta	PF17759.1	gi|345005991|ref|YP_004808844.1|	-	2.6e-37	128.4	0.0	3.7e-37	127.9	0.0	1.2	1	0	0	1	1	1	1	Phenylalanyl	tRNA	synthetase	beta	chain	CLM	domain
B5	PF03484.15	gi|345005991|ref|YP_004808844.1|	-	6.4e-14	52.0	0.0	7.3e-13	48.6	0.0	2.7	3	0	0	3	3	3	1	tRNA	synthetase	B5	domain
B3_4	PF03483.17	gi|345005991|ref|YP_004808844.1|	-	5.7e-10	39.1	0.0	3e-06	27.0	0.0	2.2	2	0	0	2	2	2	2	B3/4	domain
PhetRS_B1	PF18262.1	gi|345005991|ref|YP_004808844.1|	-	1.7e-07	31.3	0.1	0.026	14.7	0.1	3.0	2	1	0	2	2	2	2	Phe-tRNA	synthetase	beta	subunit	B1	domain
tRNA-synt_2d	PF01409.20	gi|345005991|ref|YP_004808844.1|	-	0.00012	21.7	0.0	0.0002	20.9	0.0	1.2	1	0	0	1	1	1	1	tRNA	synthetases	class	II	core	domain	(F)
tRNA-synt_2d	PF01409.20	gi|345005992|ref|YP_004808845.1|	-	4.1e-78	262.2	0.0	5.4e-78	261.9	0.0	1.1	1	0	0	1	1	1	1	tRNA	synthetases	class	II	core	domain	(F)
tRNA-synt_2	PF00152.20	gi|345005992|ref|YP_004808845.1|	-	0.0011	18.1	0.8	0.034	13.2	0.3	2.4	2	0	0	2	2	2	1	tRNA	synthetases	class	II	(D,	K	and	N)
tRNA_synthFbeta	PF17759.1	gi|345005992|ref|YP_004808845.1|	-	0.01	15.3	0.0	1.1	8.6	0.0	2.4	2	0	0	2	2	2	0	Phenylalanyl	tRNA	synthetase	beta	chain	CLM	domain
MarR	PF01047.22	gi|345005992|ref|YP_004808845.1|	-	0.034	14.1	0.0	0.45	10.5	0.0	2.3	2	0	0	2	2	2	0	MarR	family
MarR_2	PF12802.7	gi|345005992|ref|YP_004808845.1|	-	0.055	13.4	0.6	1	9.3	0.1	2.5	2	0	0	2	2	2	0	MarR	family
TetR_N	PF00440.23	gi|345005992|ref|YP_004808845.1|	-	0.13	12.0	0.6	0.78	9.6	0.2	2.3	2	0	0	2	2	2	0	Bacterial	regulatory	proteins,	tetR	family
TrmB	PF01978.19	gi|345005992|ref|YP_004808845.1|	-	0.16	11.9	0.0	23	5.0	0.0	3.2	3	0	0	3	3	3	0	Sugar-specific	transcriptional	regulator	TrmB
HTH_24	PF13412.6	gi|345005992|ref|YP_004808845.1|	-	0.19	11.3	0.0	0.38	10.3	0.0	1.5	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
Zn-ribbon_8	PF09723.10	gi|345005993|ref|YP_004808846.1|	-	0.11	12.6	0.3	12	6.2	0.1	2.4	2	0	0	2	2	2	0	Zinc	ribbon	domain
Lar_restr_allev	PF14354.6	gi|345005993|ref|YP_004808846.1|	-	0.21	12.0	1.8	0.53	10.7	1.8	1.7	1	0	0	1	1	1	0	Restriction	alleviation	protein	Lar
tRNA-synt_1b	PF00579.25	gi|345005994|ref|YP_004808847.1|	-	1.9e-39	135.8	0.0	5e-23	81.8	0.0	2.1	2	0	0	2	2	2	2	tRNA	synthetases	class	I	(W	and	Y)
DUF1737	PF08410.10	gi|345005994|ref|YP_004808847.1|	-	0.24	11.3	0.3	0.81	9.6	0.0	2.0	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF1737)
tRNA_int_endo_N	PF02778.14	gi|345005995|ref|YP_004808848.1|	-	8.1e-30	102.3	0.0	4e-15	55.2	0.0	2.4	2	0	0	2	2	2	2	tRNA	intron	endonuclease,	N-terminal	domain
tRNA_int_endo	PF01974.17	gi|345005995|ref|YP_004808848.1|	-	1.8e-29	101.6	0.5	1.8e-23	82.4	0.0	3.6	2	1	0	2	2	2	2	tRNA	intron	endonuclease,	catalytic	C-terminal	domain
tRNA_int_end_N2	PF12928.7	gi|345005995|ref|YP_004808848.1|	-	0.00018	21.6	0.0	0.084	13.1	0.0	2.6	2	0	0	2	2	2	2	tRNA-splicing	endonuclease	subunit	sen54	N-term
zf-C4_Topoisom	PF01396.19	gi|345005996|ref|YP_004808849.1|	-	7.8e-09	35.2	11.9	2.8e-07	30.2	0.4	3.4	3	0	0	3	3	3	2	Topoisomerase	DNA	binding	C4	zinc	finger
NucS	PF01939.16	gi|345005996|ref|YP_004808849.1|	-	1.4e-07	31.1	0.0	1.9e-07	30.7	0.0	1.1	1	0	0	1	1	1	1	Endonuclease	NucS
Auto_anti-p27	PF06677.12	gi|345005996|ref|YP_004808849.1|	-	6e-07	29.5	21.0	0.0002	21.4	0.2	4.3	4	0	0	4	4	4	2	Sjogren's	syndrome/scleroderma	autoantigen	1	(Autoantigen	p27)
zinc-ribbons_6	PF07191.12	gi|345005996|ref|YP_004808849.1|	-	1.9e-05	24.5	0.7	0.0077	16.2	0.4	2.5	1	1	1	2	2	2	2	zinc-ribbons
Zn-ribbon_8	PF09723.10	gi|345005996|ref|YP_004808849.1|	-	0.0013	18.8	6.1	2.9	8.1	0.4	3.9	3	0	0	3	3	3	2	Zinc	ribbon	domain
HypA	PF01155.19	gi|345005996|ref|YP_004808849.1|	-	0.0015	18.5	6.5	0.0062	16.5	0.6	3.4	1	1	1	2	2	2	1	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
DNA_ligase_ZBD	PF03119.16	gi|345005996|ref|YP_004808849.1|	-	0.035	14.1	2.5	0.035	14.1	2.5	4.5	4	1	0	4	4	4	0	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
zf-IS66	PF13005.7	gi|345005996|ref|YP_004808849.1|	-	0.058	13.8	13.2	1.7	9.1	1.6	3.9	3	0	0	3	3	3	0	zinc-finger	binding	domain	of	transposase	IS66
Amelotin	PF15757.5	gi|345005996|ref|YP_004808849.1|	-	0.088	12.4	0.1	0.13	11.8	0.1	1.2	1	0	0	1	1	1	0	Amelotin
zf-Mss51	PF13824.6	gi|345005996|ref|YP_004808849.1|	-	0.21	11.7	10.1	1.6	8.9	0.2	3.9	4	0	0	4	4	4	0	Zinc-finger	of	mitochondrial	splicing	suppressor	51
DZR	PF12773.7	gi|345005996|ref|YP_004808849.1|	-	0.24	11.5	10.6	0.12	12.4	1.0	3.1	1	1	1	2	2	2	0	Double	zinc	ribbon
zf-ISL3	PF14690.6	gi|345005996|ref|YP_004808849.1|	-	0.27	11.9	4.1	43	4.9	0.2	3.6	3	0	0	3	3	3	0	zinc-finger	of	transposase	IS204/IS1001/IS1096/IS1165
Zn_ribbon_recom	PF13408.6	gi|345005996|ref|YP_004808849.1|	-	0.68	10.5	9.0	1.2	9.7	0.3	3.4	3	0	0	3	3	3	0	Recombinase	zinc	beta	ribbon	domain
zf-ribbon_3	PF13248.6	gi|345005996|ref|YP_004808849.1|	-	0.89	9.1	12.7	11	5.6	0.1	3.8	3	0	0	3	3	3	0	zinc-ribbon	domain
Nop10p	PF04135.12	gi|345005996|ref|YP_004808849.1|	-	1.6	8.9	3.6	20	5.3	0.1	3.2	3	0	0	3	3	3	0	Nucleolar	RNA-binding	protein,	Nop10p	family
Nudix_N_2	PF14803.6	gi|345005996|ref|YP_004808849.1|	-	2.4	8.1	10.0	20	5.2	1.1	4.0	3	0	0	3	3	3	0	Nudix	N-terminal
zf-ACC	PF17848.1	gi|345005996|ref|YP_004808849.1|	-	3	8.0	5.5	56	3.9	0.0	3.6	3	0	0	3	3	3	0	Acetyl-coA	carboxylase	zinc	finger	domain
TF_Zn_Ribbon	PF08271.12	gi|345005996|ref|YP_004808849.1|	-	7.5	6.2	13.1	35	4.0	3.6	3.6	3	0	0	3	3	3	0	TFIIB	zinc-binding
Zn-C2H2_12	PF18112.1	gi|345005996|ref|YP_004808849.1|	-	9.3	6.8	6.4	1.3	9.6	0.2	2.8	3	0	0	3	3	2	0	Autophagy	receptor	zinc	finger-C2H2	domain
HAD_2	PF13419.6	gi|345005997|ref|YP_004808850.1|	-	1.1e-22	81.0	0.0	1.2e-22	80.8	0.0	1.0	1	0	0	1	1	1	1	Haloacid	dehalogenase-like	hydrolase
Hydrolase	PF00702.26	gi|345005997|ref|YP_004808850.1|	-	5.8e-15	56.1	0.0	1.1e-13	52.0	0.0	2.0	1	1	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Hydrolase_like	PF13242.6	gi|345005997|ref|YP_004808850.1|	-	1.3e-08	34.7	0.0	3.5e-08	33.4	0.0	1.7	1	0	0	1	1	1	1	HAD-hyrolase-like
HAD	PF12710.7	gi|345005997|ref|YP_004808850.1|	-	2.2e-06	28.2	0.0	2.9e-06	27.8	0.0	1.1	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
DEAD	PF00270.29	gi|345005998|ref|YP_004808851.1|	-	2.2e-24	86.2	0.0	3.9e-24	85.4	0.0	1.4	1	0	0	1	1	1	1	DEAD/DEAH	box	helicase
Sec63	PF02889.16	gi|345005998|ref|YP_004808851.1|	-	5.2e-22	78.3	0.0	7e-22	77.8	0.0	1.2	1	0	0	1	1	1	1	Sec63	Brl	domain
ResIII	PF04851.15	gi|345005998|ref|YP_004808851.1|	-	2.3e-11	44.0	0.0	3.6e-11	43.4	0.0	1.3	1	0	0	1	1	1	1	Type	III	restriction	enzyme,	res	subunit
Helicase_C	PF00271.31	gi|345005998|ref|YP_004808851.1|	-	1.7e-07	31.5	0.0	1.3e-06	28.8	0.0	2.4	2	1	0	2	2	2	1	Helicase	conserved	C-terminal	domain
HHH_5	PF14520.6	gi|345005998|ref|YP_004808851.1|	-	1e-06	29.2	0.7	2.7e-06	27.9	0.7	1.8	1	0	0	1	1	1	1	Helix-hairpin-helix	domain
DNA_pol_lambd_f	PF10391.9	gi|345005998|ref|YP_004808851.1|	-	0.13	12.1	0.0	0.32	10.8	0.0	1.6	1	0	0	1	1	1	0	Fingers	domain	of	DNA	polymerase	lambda
MatE	PF01554.18	gi|345005999|ref|YP_004808852.1|	-	1.3e-48	164.7	22.9	2.1e-29	102.3	5.9	2.9	2	1	1	3	3	3	2	MatE
Polysacc_synt_C	PF14667.6	gi|345005999|ref|YP_004808852.1|	-	8.8e-09	35.6	5.8	8.8e-09	35.6	5.8	4.7	3	2	1	4	4	4	1	Polysaccharide	biosynthesis	C-terminal	domain
MurJ	PF03023.14	gi|345005999|ref|YP_004808852.1|	-	9.8e-08	31.0	6.7	9.8e-08	31.0	6.7	2.0	2	0	0	2	2	2	1	Lipid	II	flippase	MurJ
DUF5353	PF17304.2	gi|345005999|ref|YP_004808852.1|	-	0.56	10.0	0.0	0.56	10.0	0.0	4.4	5	1	1	6	6	6	0	Family	of	unknown	function	(DUF5353)
Radical_SAM	PF04055.21	gi|345006000|ref|YP_004808853.1|	-	4.6e-12	46.6	0.0	8.8e-12	45.7	0.0	1.5	1	0	0	1	1	1	1	Radical	SAM	superfamily
LIAS_N	PF16881.5	gi|345006000|ref|YP_004808853.1|	-	3.1e-11	43.6	0.0	6.4e-11	42.6	0.0	1.5	1	0	0	1	1	1	1	N-terminal	domain	of	lipoyl	synthase	of	Radical_SAM	family
E1_dh	PF00676.20	gi|345006001|ref|YP_004808854.1|	-	7.9e-86	287.7	0.0	9.2e-86	287.5	0.0	1.0	1	0	0	1	1	1	1	Dehydrogenase	E1	component
DXP_synthase_N	PF13292.6	gi|345006001|ref|YP_004808854.1|	-	3.3e-05	23.3	0.0	5.4e-05	22.5	0.0	1.3	1	0	0	1	1	1	1	1-deoxy-D-xylulose-5-phosphate	synthase
Transketolase_N	PF00456.21	gi|345006001|ref|YP_004808854.1|	-	0.00019	20.5	0.0	0.00026	20.0	0.0	1.3	1	0	0	1	1	1	1	Transketolase,	thiamine	diphosphate	binding	domain
TPP_enzyme_C	PF02775.21	gi|345006001|ref|YP_004808854.1|	-	0.012	15.4	0.0	0.065	13.0	0.0	2.0	1	1	0	1	1	1	0	Thiamine	pyrophosphate	enzyme,	C-terminal	TPP	binding	domain
HTH_41	PF14502.6	gi|345006001|ref|YP_004808854.1|	-	0.023	14.4	0.1	0.053	13.2	0.1	1.5	1	0	0	1	1	1	0	Helix-turn-helix	domain
Transket_pyr	PF02779.24	gi|345006002|ref|YP_004808855.1|	-	6.8e-48	162.7	0.0	9.4e-48	162.2	0.0	1.2	1	0	0	1	1	1	1	Transketolase,	pyrimidine	binding	domain
Transketolase_C	PF02780.20	gi|345006002|ref|YP_004808855.1|	-	8e-38	129.1	0.1	1.3e-37	128.4	0.1	1.3	1	0	0	1	1	1	1	Transketolase,	C-terminal	domain
PFOR_II	PF17147.4	gi|345006002|ref|YP_004808855.1|	-	0.0043	17.3	0.0	0.0075	16.6	0.0	1.4	1	0	0	1	1	1	1	Pyruvate:ferredoxin	oxidoreductase	core	domain	II
Pentaxin	PF00354.17	gi|345006002|ref|YP_004808855.1|	-	0.12	12.0	0.1	0.19	11.4	0.1	1.2	1	0	0	1	1	1	0	Pentaxin	family
2-oxoacid_dh	PF00198.23	gi|345006003|ref|YP_004808856.1|	-	5.4e-89	297.6	0.2	8.5e-89	297.0	0.2	1.3	1	0	0	1	1	1	1	2-oxoacid	dehydrogenases	acyltransferase	(catalytic	domain)
Biotin_lipoyl	PF00364.22	gi|345006003|ref|YP_004808856.1|	-	1.2e-21	76.3	1.8	2.7e-21	75.2	1.8	1.6	1	0	0	1	1	1	1	Biotin-requiring	enzyme
E3_binding	PF02817.17	gi|345006003|ref|YP_004808856.1|	-	3.5e-18	65.6	3.2	2.6e-13	50.1	0.7	2.5	2	0	0	2	2	2	2	e3	binding	domain
Biotin_lipoyl_2	PF13533.6	gi|345006003|ref|YP_004808856.1|	-	5.2e-06	26.2	0.3	0.079	12.8	0.1	2.5	1	1	1	2	2	2	2	Biotin-lipoyl	like
HlyD_3	PF13437.6	gi|345006003|ref|YP_004808856.1|	-	0.0022	18.7	1.1	2.6	8.8	0.0	2.7	1	1	1	2	2	2	2	HlyD	family	secretion	protein
GCV_H	PF01597.19	gi|345006003|ref|YP_004808856.1|	-	0.028	14.3	0.3	0.077	12.9	0.3	1.8	1	0	0	1	1	1	0	Glycine	cleavage	H-protein
GatD_N	PF18195.1	gi|345006003|ref|YP_004808856.1|	-	0.11	11.8	0.1	0.25	10.7	0.1	1.5	1	0	0	1	1	1	0	GatD	N-terminal	domain
ATP-synt_ab_Xtn	PF16886.5	gi|345006003|ref|YP_004808856.1|	-	0.15	12.0	0.4	0.47	10.3	0.1	1.9	2	0	0	2	2	2	0	ATPsynthase	alpha/beta	subunit	N-term	extension
Pyr_redox_2	PF07992.14	gi|345006004|ref|YP_004808857.1|	-	1.5e-69	234.5	6.2	1.5e-69	234.5	6.2	1.6	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_dim	PF02852.22	gi|345006004|ref|YP_004808857.1|	-	6.5e-39	132.6	1.5	6.5e-39	132.6	1.5	2.0	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase,	dimerisation	domain
Pyr_redox	PF00070.27	gi|345006004|ref|YP_004808857.1|	-	1.3e-18	67.3	9.6	3.1e-18	66.1	1.1	3.2	3	0	0	3	3	3	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_3	PF13738.6	gi|345006004|ref|YP_004808857.1|	-	3e-13	49.7	0.8	3.6e-08	33.0	0.1	2.1	2	0	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
GIDA	PF01134.22	gi|345006004|ref|YP_004808857.1|	-	4e-11	42.6	3.9	9.9e-09	34.7	0.4	3.0	3	0	0	3	3	3	2	Glucose	inhibited	division	protein	A
FAD_binding_2	PF00890.24	gi|345006004|ref|YP_004808857.1|	-	3.9e-09	36.1	12.3	3.2e-07	29.8	0.8	4.2	3	1	0	4	4	4	2	FAD	binding	domain
FAD_binding_3	PF01494.19	gi|345006004|ref|YP_004808857.1|	-	2.5e-08	33.5	9.0	0.00074	18.9	0.4	3.2	3	0	0	3	3	3	3	FAD	binding	domain
HI0933_like	PF03486.14	gi|345006004|ref|YP_004808857.1|	-	2.8e-07	29.6	4.3	0.00036	19.4	0.2	3.3	3	0	0	3	3	3	2	HI0933-like	protein
NAD_binding_8	PF13450.6	gi|345006004|ref|YP_004808857.1|	-	3.4e-07	30.4	2.6	0.00051	20.2	0.2	2.5	2	0	0	2	2	2	2	NAD(P)-binding	Rossmann-like	domain
FAD_oxidored	PF12831.7	gi|345006004|ref|YP_004808857.1|	-	4.9e-07	29.5	0.4	4.9e-07	29.5	0.4	1.7	2	0	0	2	2	1	1	FAD	dependent	oxidoreductase
UDPG_MGDP_dh_N	PF03721.14	gi|345006004|ref|YP_004808857.1|	-	7.7e-07	28.9	1.4	0.00014	21.5	0.2	2.5	2	0	0	2	2	2	2	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
3HCDH_N	PF02737.18	gi|345006004|ref|YP_004808857.1|	-	7.9e-05	22.6	5.1	0.0024	17.8	0.1	2.9	3	0	0	3	3	3	2	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
NAD_binding_7	PF13241.6	gi|345006004|ref|YP_004808857.1|	-	0.00081	19.8	0.9	1.8	9.0	0.1	2.6	2	0	0	2	2	2	2	Putative	NAD(P)-binding
DAO	PF01266.24	gi|345006004|ref|YP_004808857.1|	-	0.0037	16.9	17.7	0.12	12.0	0.9	4.3	3	1	0	4	4	4	2	FAD	dependent	oxidoreductase
K_oxygenase	PF13434.6	gi|345006004|ref|YP_004808857.1|	-	0.012	14.8	0.2	1.7	7.7	0.0	2.3	2	0	0	2	2	2	0	L-lysine	6-monooxygenase	(NADPH-requiring)
Thi4	PF01946.17	gi|345006004|ref|YP_004808857.1|	-	0.015	14.6	6.2	0.08	12.2	0.6	2.9	3	0	0	3	3	3	0	Thi4	family
AIRS	PF00586.24	gi|345006004|ref|YP_004808857.1|	-	0.022	15.4	1.0	0.14	12.9	0.1	2.8	2	2	0	2	2	2	0	AIR	synthase	related	protein,	N-terminal	domain
XdhC_C	PF13478.6	gi|345006004|ref|YP_004808857.1|	-	0.05	14.1	6.3	0.2	12.1	0.3	3.6	3	2	0	3	3	3	0	XdhC	Rossmann	domain
ThiF	PF00899.21	gi|345006004|ref|YP_004808857.1|	-	0.34	10.2	2.4	1.3	8.3	0.1	2.3	2	0	0	2	2	2	0	ThiF	family
Lycopene_cycl	PF05834.12	gi|345006004|ref|YP_004808857.1|	-	0.45	9.5	2.9	11	4.9	0.5	2.4	2	1	0	2	2	2	0	Lycopene	cyclase	protein
AlaDh_PNT_C	PF01262.21	gi|345006004|ref|YP_004808857.1|	-	1.5	8.0	13.7	2.4	7.4	1.6	3.5	3	2	0	3	3	3	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
NAD_binding_9	PF13454.6	gi|345006004|ref|YP_004808857.1|	-	1.9	8.5	7.1	5.6	6.9	0.1	3.4	4	0	0	4	4	4	0	FAD-NAD(P)-binding
Peptidase_M20	PF01546.28	gi|345006005|ref|YP_004808858.1|	-	6e-33	114.3	0.2	2.1e-32	112.5	0.2	1.8	1	1	0	1	1	1	1	Peptidase	family	M20/M25/M40
M20_dimer	PF07687.14	gi|345006005|ref|YP_004808858.1|	-	1.9e-09	37.4	0.1	4.5e-09	36.2	0.1	1.6	1	0	0	1	1	1	1	Peptidase	dimerisation	domain
Peptidase_M28	PF04389.17	gi|345006005|ref|YP_004808858.1|	-	4.3e-09	36.4	0.0	9.2e-09	35.3	0.0	1.6	1	0	0	1	1	1	1	Peptidase	family	M28
PGM_PMM_I	PF02878.16	gi|345006006|ref|YP_004808859.1|	-	3.4e-31	107.8	0.0	6.1e-31	107.0	0.0	1.4	1	0	0	1	1	1	1	Phosphoglucomutase/phosphomannomutase,	alpha/beta/alpha	domain	I
PGM_PMM_II	PF02879.16	gi|345006006|ref|YP_004808859.1|	-	3.4e-30	104.7	2.6	4.7e-30	104.3	0.4	2.3	2	0	0	2	2	2	1	Phosphoglucomutase/phosphomannomutase,	alpha/beta/alpha	domain	II
PGM_PMM_IV	PF00408.20	gi|345006006|ref|YP_004808859.1|	-	7.7e-16	58.0	0.8	3.8e-15	55.8	0.8	2.2	1	0	0	1	1	1	1	Phosphoglucomutase/phosphomannomutase,	C-terminal	domain
PGM_PMM_III	PF02880.16	gi|345006006|ref|YP_004808859.1|	-	2.6e-14	53.4	0.1	3.2e-13	49.9	0.0	2.2	2	0	0	2	2	2	1	Phosphoglucomutase/phosphomannomutase,	alpha/beta/alpha	domain	III
Smoothelin	PF12510.8	gi|345006006|ref|YP_004808859.1|	-	0.25	11.4	1.1	0.52	10.4	1.1	1.5	1	0	0	1	1	1	0	Smoothelin	cytoskeleton	protein
CinA_KH	PF18146.1	gi|345006006|ref|YP_004808859.1|	-	0.33	11.1	2.2	0.4	10.9	0.2	2.2	2	0	0	2	2	2	0	Damage-inducible	protein	CinA	KH	domain
Ead_Ea22	PF13935.6	gi|345006007|ref|YP_004808860.1|	-	0.021	15.5	2.9	0.021	15.5	2.9	2.7	3	0	0	3	3	3	0	Ead/Ea22-like	protein
Bap31_Bap29_C	PF18035.1	gi|345006007|ref|YP_004808860.1|	-	7.8	6.6	6.3	2.9	8.0	0.6	3.1	3	0	0	3	3	3	0	Bap31/Bap29	cytoplasmic	coiled-coil	domain
PRA-CH	PF01502.18	gi|345006008|ref|YP_004808861.1|	-	6.6e-35	118.8	0.1	1.2e-34	118.0	0.1	1.4	1	0	0	1	1	1	1	Phosphoribosyl-AMP	cyclohydrolase
Arc_PepC_II	PF06847.11	gi|345006009|ref|YP_004808862.1|	-	1.2e-10	41.8	0.0	3.2e-09	37.2	0.0	2.5	3	0	0	3	3	3	1	Archaeal	Peptidase	A24	C-terminus	Type	II
Peptidase_A24	PF01478.18	gi|345006009|ref|YP_004808862.1|	-	7.4e-08	32.8	6.1	7.4e-08	32.8	6.1	1.9	2	1	0	2	2	2	1	Type	IV	leader	peptidase	family
Aldedh	PF00171.22	gi|345006010|ref|YP_004808863.1|	-	1.3e-138	462.4	0.0	1.5e-138	462.2	0.0	1.0	1	0	0	1	1	1	1	Aldehyde	dehydrogenase	family
TPP_enzyme_N	PF02776.18	gi|345006011|ref|YP_004808864.1|	-	3.8e-54	182.9	0.0	1.1e-53	181.4	0.0	1.8	2	0	0	2	2	2	1	Thiamine	pyrophosphate	enzyme,	N-terminal	TPP	binding	domain
TPP_enzyme_C	PF02775.21	gi|345006011|ref|YP_004808864.1|	-	3.8e-33	114.4	0.3	2.4e-32	111.8	0.0	2.2	2	0	0	2	2	2	1	Thiamine	pyrophosphate	enzyme,	C-terminal	TPP	binding	domain
TPP_enzyme_M	PF00205.22	gi|345006011|ref|YP_004808864.1|	-	2.3e-32	111.6	0.1	3.9e-32	110.9	0.1	1.4	1	0	0	1	1	1	1	Thiamine	pyrophosphate	enzyme,	central	domain
DUF824	PF05688.11	gi|345006011|ref|YP_004808864.1|	-	0.15	11.9	0.0	0.34	10.8	0.0	1.6	1	0	0	1	1	1	0	Salmonella	repeat	of	unknown	function	(DUF824)
Fzo_mitofusin	PF04799.13	gi|345006012|ref|YP_004808865.1|	-	0.097	12.2	0.1	0.12	11.9	0.1	1.2	1	0	0	1	1	1	0	fzo-like	conserved	region
FolB	PF02152.18	gi|345006012|ref|YP_004808865.1|	-	0.11	13.1	0.3	0.2	12.2	0.1	1.6	1	1	1	2	2	2	0	Dihydroneopterin	aldolase
DUF3456	PF11938.8	gi|345006014|ref|YP_004808867.1|	-	0.054	14.0	0.0	0.086	13.3	0.0	1.3	1	0	0	1	1	1	0	TLR4	regulator	and	MIR-interacting	MSAP
Fer2	PF00111.27	gi|345006015|ref|YP_004808868.1|	-	1.2e-13	50.8	0.3	1.8e-13	50.2	0.3	1.3	1	0	0	1	1	1	1	2Fe-2S	iron-sulfur	cluster	binding	domain
UPF0029	PF01205.19	gi|345006016|ref|YP_004808869.1|	-	1.4e-27	96.1	0.0	1.9e-27	95.7	0.0	1.2	1	0	0	1	1	1	1	Uncharacterized	protein	family	UPF0029
DUF1949	PF09186.11	gi|345006016|ref|YP_004808869.1|	-	2.4e-08	33.7	0.5	5.6e-08	32.5	0.1	1.9	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF1949)
EFG_C	PF00679.24	gi|345006016|ref|YP_004808869.1|	-	0.054	13.5	0.0	0.097	12.7	0.0	1.4	1	0	0	1	1	1	0	Elongation	factor	G	C-terminus
ACT	PF01842.25	gi|345006017|ref|YP_004808870.1|	-	1.4e-05	24.8	1.3	6.5e-05	22.6	0.1	2.5	3	0	0	3	3	3	1	ACT	domain
ACT_4	PF13291.6	gi|345006017|ref|YP_004808870.1|	-	0.013	16.1	0.0	0.13	12.9	0.0	2.3	2	0	0	2	2	2	0	ACT	domain
ACT_7	PF13840.6	gi|345006017|ref|YP_004808870.1|	-	0.14	11.9	0.0	0.29	11.0	0.0	1.5	1	0	0	1	1	1	0	ACT	domain
Mucin	PF01456.17	gi|345006018|ref|YP_004808871.1|	-	0.046	13.7	3.4	0.055	13.5	3.4	1.1	1	0	0	1	1	1	0	Mucin-like	glycoprotein
IGPD	PF00475.18	gi|345006019|ref|YP_004808872.1|	-	5.6e-62	208.3	2.4	7.1e-62	208.0	2.4	1.1	1	0	0	1	1	1	1	Imidazoleglycerol-phosphate	dehydratase
Cupin_2	PF07883.11	gi|345006020|ref|YP_004808873.1|	-	4e-15	55.3	3.4	6e-15	54.7	3.4	1.3	1	0	0	1	1	1	1	Cupin	domain
Ectoine_synth	PF06339.12	gi|345006020|ref|YP_004808873.1|	-	7.8e-05	22.9	0.0	9e-05	22.7	0.0	1.1	1	0	0	1	1	1	1	Ectoine	synthase
AraC_binding	PF02311.19	gi|345006020|ref|YP_004808873.1|	-	0.00028	20.8	0.7	0.00036	20.5	0.7	1.1	1	0	0	1	1	1	1	AraC-like	ligand	binding	domain
Ppnp	PF06865.11	gi|345006020|ref|YP_004808873.1|	-	0.0096	16.3	0.0	0.016	15.6	0.0	1.4	1	0	0	1	1	1	1	Pyrimidine/purine	nucleoside	phosphorylase
MannoseP_isomer	PF01050.18	gi|345006020|ref|YP_004808873.1|	-	0.021	14.7	0.0	0.028	14.3	0.0	1.1	1	0	0	1	1	1	0	Mannose-6-phosphate	isomerase
Chitin_bind_4	PF00379.23	gi|345006020|ref|YP_004808873.1|	-	0.037	14.5	0.7	0.063	13.8	0.1	1.8	2	0	0	2	2	2	0	Insect	cuticle	protein
Cupin_3	PF05899.12	gi|345006020|ref|YP_004808873.1|	-	0.092	12.5	0.2	0.13	11.9	0.2	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF861)
Auxin_BP	PF02041.16	gi|345006020|ref|YP_004808873.1|	-	0.093	12.4	0.0	0.11	12.2	0.0	1.2	1	0	0	1	1	1	0	Auxin	binding	protein
HTH_27	PF13463.6	gi|345006022|ref|YP_004808875.1|	-	0.0074	16.8	0.1	0.017	15.6	0.1	1.7	1	1	0	1	1	1	1	Winged	helix	DNA-binding	domain
HTH_20	PF12840.7	gi|345006022|ref|YP_004808875.1|	-	0.0082	16.2	0.9	0.015	15.3	0.9	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
MarR_2	PF12802.7	gi|345006022|ref|YP_004808875.1|	-	0.072	13.0	0.6	0.61	10.0	0.6	2.2	1	1	0	1	1	1	0	MarR	family
Iso_dh	PF00180.20	gi|345006023|ref|YP_004808876.1|	-	3.9e-105	351.8	0.0	4.8e-105	351.5	0.0	1.1	1	0	0	1	1	1	1	Isocitrate/isopropylmalate	dehydrogenase
Asparaginase_2	PF01112.18	gi|345006024|ref|YP_004808877.1|	-	5e-60	203.1	12.6	5.6e-60	202.9	12.6	1.0	1	0	0	1	1	1	1	Asparaginase
GYD	PF08734.11	gi|345006024|ref|YP_004808877.1|	-	0.14	12.2	4.3	7.9	6.5	0.1	3.5	3	1	0	3	3	3	0	GYD	domain
tRNA-synt_1b	PF00579.25	gi|345006028|ref|YP_004808881.1|	-	3.9e-44	151.1	0.0	5.8e-44	150.6	0.0	1.2	1	0	0	1	1	1	1	tRNA	synthetases	class	I	(W	and	Y)
DUF2156	PF09924.9	gi|345006028|ref|YP_004808881.1|	-	0.015	14.3	0.0	0.02	13.9	0.0	1.3	1	0	0	1	1	1	0	Uncharacterised	conserved	protein	(DUF2156)
tRNA-synt_1f	PF01921.18	gi|345006028|ref|YP_004808881.1|	-	0.018	14.0	0.1	1.9	7.4	0.0	2.2	2	0	0	2	2	2	0	tRNA	synthetases	class	I	(K)
DUF4131	PF13567.6	gi|345006029|ref|YP_004808882.1|	-	0.59	9.8	6.4	0.69	9.5	6.4	1.0	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4131)
DUF4225	PF13988.6	gi|345006029|ref|YP_004808882.1|	-	3.1	7.3	6.4	6.2	6.3	6.1	1.6	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF4225)
DUF2892	PF11127.8	gi|345006029|ref|YP_004808882.1|	-	7.4	6.7	12.1	13	5.9	12.1	1.5	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF2892)
eIF-1a	PF01176.19	gi|345006030|ref|YP_004808883.1|	-	4.5e-23	80.8	0.1	6e-23	80.4	0.1	1.2	1	0	0	1	1	1	1	Translation	initiation	factor	1A	/	IF-1
Myosin_N	PF02736.19	gi|345006030|ref|YP_004808883.1|	-	0.072	12.9	0.1	0.23	11.3	0.0	1.8	2	0	0	2	2	2	0	Myosin	N-terminal	SH3-like	domain
Prot_ATP_ID_OB	PF16450.5	gi|345006030|ref|YP_004808883.1|	-	0.097	12.6	0.0	0.15	12.0	0.0	1.2	1	0	0	1	1	1	0	Proteasomal	ATPase	OB	C-terminal	domain
RIO1	PF01163.22	gi|345006032|ref|YP_004808885.1|	-	4.2e-62	209.1	0.0	7.2e-62	208.3	0.0	1.3	1	0	0	1	1	1	1	RIO1	family
APH	PF01636.23	gi|345006032|ref|YP_004808885.1|	-	2.2e-09	37.6	1.8	4.4e-06	26.8	0.0	2.8	2	1	1	3	3	3	2	Phosphotransferase	enzyme	family
Kdo	PF06293.14	gi|345006032|ref|YP_004808885.1|	-	5.8e-06	25.8	0.1	2.9e-05	23.5	0.1	2.0	1	1	0	1	1	1	1	Lipopolysaccharide	kinase	(Kdo/WaaP)	family
Pkinase	PF00069.25	gi|345006032|ref|YP_004808885.1|	-	0.002	17.5	0.0	0.0055	16.1	0.0	1.6	2	0	0	2	2	2	1	Protein	kinase	domain
Pkinase_fungal	PF17667.1	gi|345006032|ref|YP_004808885.1|	-	0.0052	15.6	0.0	0.0082	15.0	0.0	1.2	1	0	0	1	1	1	1	Fungal	protein	kinase
WaaY	PF06176.11	gi|345006032|ref|YP_004808885.1|	-	0.011	15.4	0.0	0.017	14.7	0.0	1.3	1	0	0	1	1	1	0	Lipopolysaccharide	core	biosynthesis	protein	(WaaY)
Peripla_BP_3	PF13377.6	gi|345006032|ref|YP_004808885.1|	-	0.035	14.4	0.0	0.086	13.2	0.0	1.6	1	1	0	1	1	1	0	Periplasmic	binding	protein-like	domain
KH_1	PF00013.29	gi|345006033|ref|YP_004808886.1|	-	4.6e-13	48.8	4.5	1.9e-08	34.0	0.4	2.3	2	0	0	2	2	2	2	KH	domain
KH_2	PF07650.17	gi|345006033|ref|YP_004808886.1|	-	0.00066	19.4	1.7	0.033	14.0	0.1	2.7	2	1	1	3	3	3	1	KH	domain
KH_8	PF17903.1	gi|345006033|ref|YP_004808886.1|	-	0.0021	18.1	0.0	0.0034	17.5	0.0	1.3	1	0	0	1	1	1	1	Krr1	KH1	domain
KH_4	PF13083.6	gi|345006033|ref|YP_004808886.1|	-	0.0041	17.0	1.1	1.5	8.8	0.2	2.8	2	1	0	2	2	2	2	KH	domain
ATP-synt_D	PF01813.17	gi|345006034|ref|YP_004808887.1|	-	5.2e-55	186.3	9.4	6.4e-55	186.0	9.4	1.1	1	0	0	1	1	1	1	ATP	synthase	subunit	D
eRF1_2	PF03464.15	gi|345006036|ref|YP_004808889.1|	-	3.2e-43	147.2	0.0	6.3e-43	146.3	0.0	1.5	1	0	0	1	1	1	1	eRF1	domain	2
eRF1_3	PF03465.15	gi|345006036|ref|YP_004808889.1|	-	5.6e-25	88.0	0.4	1.9e-24	86.3	0.0	2.1	3	0	0	3	3	3	1	eRF1	domain	3
acVLRF1	PF18859.1	gi|345006036|ref|YP_004808889.1|	-	1.8e-16	60.6	0.0	5.7e-16	59.0	0.0	1.8	1	0	0	1	1	1	1	Actinobacteria/chloroflexi	VLRF1	release	factor
baeRF_family10	PF18854.1	gi|345006036|ref|YP_004808889.1|	-	6.1e-15	55.7	0.1	3.9e-14	53.1	0.0	2.3	3	0	0	3	3	3	1	Bacterial	archaeo-eukaryotic	release	factor	family	10
eRF1_1	PF03463.15	gi|345006036|ref|YP_004808889.1|	-	2.6e-10	40.4	0.0	3.9e-10	39.8	0.0	1.3	1	0	0	1	1	1	1	eRF1	domain	1
baeRF_family12	PF18856.1	gi|345006036|ref|YP_004808889.1|	-	0.0022	18.6	0.0	0.0052	17.4	0.0	1.6	1	0	0	1	1	1	1	Bacterial	archaeo-eukaryotic	release	factor	family	12
Zn-ribbon_8	PF09723.10	gi|345006036|ref|YP_004808889.1|	-	1.1	9.4	3.2	2.5	8.3	1.8	2.1	2	0	0	2	2	2	0	Zinc	ribbon	domain
tRNA-synt_1d	PF00750.19	gi|345006037|ref|YP_004808890.1|	-	2.3e-39	135.3	0.0	3.2e-39	134.8	0.0	1.1	1	0	0	1	1	1	1	tRNA	synthetases	class	I	(R)
DALR_1	PF05746.15	gi|345006037|ref|YP_004808890.1|	-	2.5e-31	108.3	0.0	2.2e-30	105.2	0.0	2.2	2	0	0	2	2	2	1	DALR	anticodon	binding	domain
Arg_tRNA_synt_N	PF03485.16	gi|345006037|ref|YP_004808890.1|	-	1.4e-07	32.0	0.0	3.9e-07	30.6	0.0	1.8	1	0	0	1	1	1	1	Arginyl	tRNA	synthetase	N	terminal	domain
tRNA-synt_1f	PF01921.18	gi|345006037|ref|YP_004808890.1|	-	0.0029	16.6	0.0	0.068	12.1	0.0	2.2	2	0	0	2	2	2	1	tRNA	synthetases	class	I	(K)
CTP-dep_RFKase	PF01982.16	gi|345006038|ref|YP_004808891.1|	-	6.9e-45	152.1	0.0	9.7e-45	151.6	0.0	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	DUF120
HTH_20	PF12840.7	gi|345006038|ref|YP_004808891.1|	-	3.5e-07	30.2	0.4	7.2e-07	29.2	0.4	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_24	PF13412.6	gi|345006038|ref|YP_004808891.1|	-	2.6e-06	26.9	0.1	4.1e-06	26.3	0.1	1.3	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
MarR_2	PF12802.7	gi|345006038|ref|YP_004808891.1|	-	3.4e-05	23.6	0.3	6.6e-05	22.7	0.3	1.5	1	0	0	1	1	1	1	MarR	family
HTH_Crp_2	PF13545.6	gi|345006038|ref|YP_004808891.1|	-	0.00022	21.1	0.0	0.0005	20.0	0.0	1.6	1	0	0	1	1	1	1	Crp-like	helix-turn-helix	domain
MarR	PF01047.22	gi|345006038|ref|YP_004808891.1|	-	0.00029	20.7	0.0	0.00068	19.5	0.0	1.6	1	0	0	1	1	1	1	MarR	family
HTH_AsnC-type	PF13404.6	gi|345006038|ref|YP_004808891.1|	-	0.00051	19.8	0.5	0.001	18.8	0.5	1.5	1	0	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
HTH_11	PF08279.12	gi|345006038|ref|YP_004808891.1|	-	0.0016	18.3	0.1	0.0029	17.5	0.1	1.4	1	0	0	1	1	1	1	HTH	domain
HTH_27	PF13463.6	gi|345006038|ref|YP_004808891.1|	-	0.0058	17.1	0.0	0.014	15.9	0.0	1.7	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
HTH_DeoR	PF08220.12	gi|345006038|ref|YP_004808891.1|	-	0.0071	16.1	0.0	0.014	15.2	0.0	1.4	1	0	0	1	1	1	1	DeoR-like	helix-turn-helix	domain
Fe_dep_repress	PF01325.19	gi|345006038|ref|YP_004808891.1|	-	0.041	14.1	0.0	0.08	13.2	0.0	1.4	1	0	0	1	1	1	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_34	PF13601.6	gi|345006038|ref|YP_004808891.1|	-	0.052	13.7	0.0	0.1	12.8	0.0	1.5	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
HTH_1	PF00126.27	gi|345006038|ref|YP_004808891.1|	-	0.054	13.4	0.1	0.2	11.7	0.1	2.0	1	0	0	1	1	1	0	Bacterial	regulatory	helix-turn-helix	protein,	lysR	family
HxlR	PF01638.17	gi|345006038|ref|YP_004808891.1|	-	0.084	12.7	0.0	0.18	11.7	0.0	1.5	1	0	0	1	1	1	0	HxlR-like	helix-turn-helix
TrmB	PF01978.19	gi|345006038|ref|YP_004808891.1|	-	0.087	12.7	0.0	0.18	11.7	0.0	1.5	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
GARS_A	PF01071.19	gi|345006038|ref|YP_004808891.1|	-	0.15	11.8	0.4	0.27	11.0	0.4	1.4	1	1	0	1	1	1	0	Phosphoribosylglycinamide	synthetase,	ATP-grasp	(A)	domain
LexA_DNA_bind	PF01726.16	gi|345006038|ref|YP_004808891.1|	-	0.16	11.8	0.0	0.32	10.8	0.0	1.4	1	0	0	1	1	1	0	LexA	DNA	binding	domain
DHBP_synthase	PF00926.19	gi|345006039|ref|YP_004808892.1|	-	7.4e-52	175.7	0.1	8.5e-52	175.5	0.1	1.0	1	0	0	1	1	1	1	3,4-dihydroxy-2-butanone	4-phosphate	synthase
IspD	PF01128.19	gi|345006039|ref|YP_004808892.1|	-	0.13	12.0	0.4	0.21	11.3	0.4	1.3	1	0	0	1	1	1	0	2-C-methyl-D-erythritol	4-phosphate	cytidylyltransferase
Aminotran_4	PF01063.19	gi|345006040|ref|YP_004808893.1|	-	6.1e-51	173.4	0.0	7.3e-51	173.2	0.0	1.1	1	0	0	1	1	1	1	Amino-transferase	class	IV
Peripla_BP_6	PF13458.6	gi|345006041|ref|YP_004808894.1|	-	1.3e-55	189.5	6.5	1.6e-55	189.2	6.5	1.0	1	0	0	1	1	1	1	Periplasmic	binding	protein
ANF_receptor	PF01094.28	gi|345006041|ref|YP_004808894.1|	-	1.5e-16	60.5	0.0	1.1e-15	57.6	0.0	1.9	1	1	0	1	1	1	1	Receptor	family	ligand	binding	region
Peripla_BP_5	PF13433.6	gi|345006041|ref|YP_004808894.1|	-	1.4e-14	53.9	0.9	6.1e-14	51.8	0.9	1.9	1	1	0	1	1	1	1	Periplasmic	binding	protein	domain
TAT_signal	PF10518.9	gi|345006041|ref|YP_004808894.1|	-	0.0093	15.8	2.1	0.037	13.9	2.1	2.0	1	0	0	1	1	1	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
BPD_transp_2	PF02653.16	gi|345006042|ref|YP_004808895.1|	-	2.5e-42	144.9	39.0	3e-42	144.6	39.0	1.0	1	0	0	1	1	1	1	Branched-chain	amino	acid	transport	system	/	permease	component
Patched	PF02460.18	gi|345006042|ref|YP_004808895.1|	-	0.22	9.6	0.8	0.36	8.8	0.8	1.3	1	0	0	1	1	1	0	Patched	family
BPD_transp_2	PF02653.16	gi|345006043|ref|YP_004808896.1|	-	1.4e-29	103.1	36.9	1.7e-29	102.8	36.9	1.1	1	0	0	1	1	1	1	Branched-chain	amino	acid	transport	system	/	permease	component
ABC_tran	PF00005.27	gi|345006044|ref|YP_004808897.1|	-	7.3e-31	107.5	0.0	1e-30	107.0	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|345006044|ref|YP_004808897.1|	-	4.5e-14	53.0	0.0	1.1e-06	28.7	0.0	2.1	2	0	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
BCA_ABC_TP_C	PF12399.8	gi|345006044|ref|YP_004808897.1|	-	9.2e-10	38.2	0.4	4.1e-09	36.1	0.4	2.1	2	0	0	2	2	2	1	Branched-chain	amino	acid	ATP-binding	cassette	transporter
SMC_N	PF02463.19	gi|345006044|ref|YP_004808897.1|	-	7.4e-06	25.6	0.0	2.3e-05	24.0	0.0	1.6	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_29	PF13555.6	gi|345006044|ref|YP_004808897.1|	-	1.6e-05	24.5	0.0	3.2e-05	23.6	0.0	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_23	PF13476.6	gi|345006044|ref|YP_004808897.1|	-	3.8e-05	24.3	0.1	6.3e-05	23.6	0.1	1.3	1	0	0	1	1	1	1	AAA	domain
AAA_16	PF13191.6	gi|345006044|ref|YP_004808897.1|	-	0.00088	19.7	0.0	0.0014	19.0	0.0	1.4	1	1	0	1	1	1	1	AAA	ATPase	domain
RsgA_GTPase	PF03193.16	gi|345006044|ref|YP_004808897.1|	-	0.015	15.2	0.0	0.028	14.3	0.0	1.4	1	0	0	1	1	1	0	RsgA	GTPase
AAA_15	PF13175.6	gi|345006044|ref|YP_004808897.1|	-	0.035	13.8	0.1	1.4	8.6	0.0	2.0	2	0	0	2	2	2	0	AAA	ATPase	domain
MMR_HSR1	PF01926.23	gi|345006044|ref|YP_004808897.1|	-	0.04	14.0	0.0	0.092	12.8	0.0	1.6	2	0	0	2	2	2	0	50S	ribosome-binding	GTPase
AAA_PrkA	PF08298.11	gi|345006044|ref|YP_004808897.1|	-	0.068	12.1	0.0	0.17	10.8	0.0	1.6	2	0	0	2	2	2	0	PrkA	AAA	domain
AAA_27	PF13514.6	gi|345006044|ref|YP_004808897.1|	-	0.14	11.7	0.0	0.22	11.1	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
AAA_22	PF13401.6	gi|345006044|ref|YP_004808897.1|	-	0.16	12.2	0.1	0.85	9.9	0.1	2.0	1	1	0	1	1	1	0	AAA	domain
ABC_tran	PF00005.27	gi|345006045|ref|YP_004808898.1|	-	5.5e-33	114.4	0.0	7.4e-33	114.0	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|345006045|ref|YP_004808898.1|	-	1.6e-14	54.5	0.5	4.6e-06	26.7	0.2	2.1	2	0	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|345006045|ref|YP_004808898.1|	-	1.1e-05	25.0	0.2	0.00095	18.7	0.2	2.1	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_29	PF13555.6	gi|345006045|ref|YP_004808898.1|	-	3.7e-05	23.4	0.0	7.7e-05	22.4	0.0	1.5	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_15	PF13175.6	gi|345006045|ref|YP_004808898.1|	-	0.00012	22.0	0.0	0.00015	21.6	0.0	1.2	1	0	0	1	1	1	1	AAA	ATPase	domain
AAA_23	PF13476.6	gi|345006045|ref|YP_004808898.1|	-	0.0015	19.1	0.0	0.0032	18.0	0.0	1.5	2	0	0	2	2	2	1	AAA	domain
AAA	PF00004.29	gi|345006045|ref|YP_004808898.1|	-	0.0033	17.8	0.0	0.043	14.2	0.0	2.4	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
RsgA_GTPase	PF03193.16	gi|345006045|ref|YP_004808898.1|	-	0.0063	16.4	0.0	0.02	14.8	0.0	1.7	2	0	0	2	2	2	1	RsgA	GTPase
AAA_22	PF13401.6	gi|345006045|ref|YP_004808898.1|	-	0.017	15.4	0.1	0.04	14.2	0.0	1.7	2	0	0	2	2	2	0	AAA	domain
AAA_30	PF13604.6	gi|345006045|ref|YP_004808898.1|	-	0.034	13.9	0.0	0.038	13.7	0.0	1.3	1	1	0	1	1	1	0	AAA	domain
AAA_16	PF13191.6	gi|345006045|ref|YP_004808898.1|	-	0.037	14.4	0.3	0.087	13.2	0.3	1.8	1	1	0	1	1	1	0	AAA	ATPase	domain
AAA_24	PF13479.6	gi|345006045|ref|YP_004808898.1|	-	0.042	13.6	0.0	0.07	12.8	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
AAA_33	PF13671.6	gi|345006045|ref|YP_004808898.1|	-	0.067	13.3	0.1	0.24	11.5	0.1	1.8	1	1	0	1	1	1	0	AAA	domain
AAA_5	PF07728.14	gi|345006045|ref|YP_004808898.1|	-	0.097	12.7	0.0	0.26	11.3	0.0	1.9	2	0	0	2	2	2	0	AAA	domain	(dynein-related	subfamily)
ATP_bind_1	PF03029.17	gi|345006045|ref|YP_004808898.1|	-	0.13	12.1	0.1	0.18	11.5	0.1	1.2	1	0	0	1	1	1	0	Conserved	hypothetical	ATP	binding	protein
NACHT	PF05729.12	gi|345006045|ref|YP_004808898.1|	-	0.14	12.1	0.0	0.24	11.3	0.0	1.3	1	0	0	1	1	1	0	NACHT	domain
AAA_25	PF13481.6	gi|345006045|ref|YP_004808898.1|	-	0.15	11.6	0.1	0.93	9.0	0.0	2.0	2	1	0	2	2	2	0	AAA	domain
ATPase_2	PF01637.18	gi|345006045|ref|YP_004808898.1|	-	0.16	11.9	0.0	0.28	11.1	0.0	1.3	1	0	0	1	1	1	0	ATPase	domain	predominantly	from	Archaea
NB-ARC	PF00931.22	gi|345006045|ref|YP_004808898.1|	-	0.22	10.7	0.0	0.34	10.1	0.0	1.2	1	0	0	1	1	1	0	NB-ARC	domain
Ribosomal_L15e	PF00827.17	gi|345006046|ref|YP_004808899.1|	-	9e-81	270.2	6.9	1e-80	270.0	6.9	1.0	1	0	0	1	1	1	1	Ribosomal	L15
ADH_N_2	PF16884.5	gi|345006047|ref|YP_004808900.1|	-	4.2e-37	126.3	0.8	8.1e-37	125.4	0.1	1.8	2	0	0	2	2	2	1	N-terminal	domain	of	oxidoreductase
ADH_zinc_N	PF00107.26	gi|345006047|ref|YP_004808900.1|	-	2.9e-20	72.6	0.2	5e-20	71.8	0.2	1.3	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
ADH_zinc_N_2	PF13602.6	gi|345006047|ref|YP_004808900.1|	-	2.7e-09	38.2	0.3	1.1e-08	36.2	0.0	1.9	2	0	0	2	2	2	1	Zinc-binding	dehydrogenase
UBZ_FAAP20	PF15750.5	gi|345006047|ref|YP_004808900.1|	-	0.066	13.2	0.0	0.14	12.2	0.0	1.4	1	0	0	1	1	1	0	Ubiquitin-binding	zinc-finger
ThiF	PF00899.21	gi|345006048|ref|YP_004808901.1|	-	4.5e-64	216.1	0.0	5.8e-64	215.8	0.0	1.0	1	0	0	1	1	1	1	ThiF	family
Sacchrp_dh_NADP	PF03435.18	gi|345006048|ref|YP_004808901.1|	-	0.0017	18.6	0.3	0.0044	17.3	0.3	1.7	1	1	0	1	1	1	1	Saccharopine	dehydrogenase	NADP	binding	domain
PglD_N	PF17836.1	gi|345006048|ref|YP_004808901.1|	-	0.0041	17.7	0.2	0.0078	16.8	0.2	1.5	1	0	0	1	1	1	1	PglD	N-terminal	domain
Shikimate_DH	PF01488.20	gi|345006048|ref|YP_004808901.1|	-	0.059	13.4	0.1	0.13	12.4	0.0	1.6	2	0	0	2	2	2	0	Shikimate	/	quinate	5-dehydrogenase
TFIIB	PF00382.19	gi|345006049|ref|YP_004808902.1|	-	6e-37	125.5	0.2	2.7e-17	62.6	0.0	2.3	2	0	0	2	2	2	2	Transcription	factor	TFIIB	repeat
TF_Zn_Ribbon	PF08271.12	gi|345006049|ref|YP_004808902.1|	-	4e-15	55.1	1.2	8.4e-15	54.0	1.2	1.5	1	0	0	1	1	1	1	TFIIB	zinc-binding
Cyclin_C	PF02984.19	gi|345006049|ref|YP_004808902.1|	-	2.8e-05	24.2	0.0	0.0008	19.5	0.0	2.2	2	0	0	2	2	2	1	Cyclin,	C-terminal	domain
zf_Rg	PF17915.1	gi|345006049|ref|YP_004808902.1|	-	0.0073	15.7	0.5	0.017	14.5	0.5	1.5	1	0	0	1	1	1	1	Reverse	gyrase	zinc	finger
DZR	PF12773.7	gi|345006049|ref|YP_004808902.1|	-	0.021	14.9	0.5	0.038	14.0	0.5	1.4	1	0	0	1	1	1	0	Double	zinc	ribbon
OrfB_Zn_ribbon	PF07282.11	gi|345006049|ref|YP_004808902.1|	-	0.022	14.6	0.4	0.044	13.7	0.4	1.4	1	0	0	1	1	1	0	Putative	transposase	DNA-binding	domain
Cyclin_N	PF00134.23	gi|345006049|ref|YP_004808902.1|	-	0.033	13.9	0.0	0.1	12.3	0.0	1.8	2	0	0	2	2	2	0	Cyclin,	N-terminal	domain
RNA_POL_M_15KD	PF02150.16	gi|345006049|ref|YP_004808902.1|	-	0.036	13.9	0.5	0.067	13.1	0.5	1.5	1	0	0	1	1	1	0	RNA	polymerases	M/15	Kd	subunit
Sigma70_r4	PF04545.16	gi|345006049|ref|YP_004808902.1|	-	0.048	13.2	0.0	0.77	9.3	0.0	2.7	2	0	0	2	2	2	0	Sigma-70,	region	4
zf-NADH-PPase	PF09297.11	gi|345006049|ref|YP_004808902.1|	-	0.058	13.1	0.7	0.12	12.0	0.7	1.5	1	0	0	1	1	1	0	NADH	pyrophosphatase	zinc	ribbon	domain
A2L_zn_ribbon	PF08792.10	gi|345006049|ref|YP_004808902.1|	-	0.098	12.4	2.6	2.8	7.8	0.1	2.3	2	0	0	2	2	2	0	A2L	zinc	ribbon	domain
zf-ribbon_3	PF13248.6	gi|345006049|ref|YP_004808902.1|	-	0.14	11.6	0.6	8.7	5.9	0.1	2.3	2	0	0	2	2	2	0	zinc-ribbon	domain
Zn-ribbon_8	PF09723.10	gi|345006049|ref|YP_004808902.1|	-	0.2	11.8	4.5	0.94	9.7	0.6	2.5	1	1	2	3	3	3	0	Zinc	ribbon	domain
GATA	PF00320.27	gi|345006049|ref|YP_004808902.1|	-	0.52	10.0	2.5	2.1	8.0	0.2	2.6	1	1	1	2	2	2	0	GATA	zinc	finger
zf-IS66	PF13005.7	gi|345006049|ref|YP_004808902.1|	-	0.61	10.5	2.4	7.3	7.1	0.4	2.7	2	0	0	2	2	2	0	zinc-finger	binding	domain	of	transposase	IS66
zinc_ribbon_9	PF14369.6	gi|345006049|ref|YP_004808902.1|	-	1.7	9.0	4.5	1.9	8.8	0.4	2.4	1	1	1	2	2	2	0	zinc-ribbon
ATP_bind_3	PF01171.20	gi|345006050|ref|YP_004808903.1|	-	3e-11	43.4	0.0	5.4e-11	42.6	0.0	1.4	1	1	0	1	1	1	1	PP-loop	family
tRNA_Me_trans	PF03054.16	gi|345006050|ref|YP_004808903.1|	-	0.00013	20.9	0.0	0.00017	20.5	0.0	1.2	1	0	0	1	1	1	1	tRNA	methyl	transferase
PAPS_reduct	PF01507.19	gi|345006050|ref|YP_004808903.1|	-	0.00017	21.7	0.0	0.00024	21.2	0.0	1.2	1	0	0	1	1	1	1	Phosphoadenosine	phosphosulfate	reductase	family
zn-ribbon_14	PF16503.5	gi|345006050|ref|YP_004808903.1|	-	0.0012	18.3	2.3	0.0012	18.3	2.3	3.0	3	0	0	3	3	3	1	Zinc-ribbon
NAD_synthase	PF02540.17	gi|345006050|ref|YP_004808903.1|	-	0.0037	16.4	0.0	0.0059	15.8	0.0	1.3	1	0	0	1	1	1	1	NAD	synthase
QueC	PF06508.13	gi|345006050|ref|YP_004808903.1|	-	0.6	9.6	2.6	0.93	8.9	0.0	2.4	2	1	0	2	2	2	0	Queuosine	biosynthesis	protein	QueC
RecR	PF02132.15	gi|345006050|ref|YP_004808903.1|	-	2.4	7.8	11.9	0.17	11.5	1.6	3.5	4	0	0	4	4	4	0	RecR	protein
Methyltransf_25	PF13649.6	gi|345006051|ref|YP_004808904.1|	-	6.2e-12	46.1	0.0	1.1e-11	45.2	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.6	gi|345006051|ref|YP_004808904.1|	-	2.9e-11	43.4	0.0	3.8e-11	43.0	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_11	PF08241.12	gi|345006051|ref|YP_004808904.1|	-	1.6e-09	38.3	0.0	2.6e-09	37.6	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
PCMT	PF01135.19	gi|345006051|ref|YP_004808904.1|	-	9.3e-08	32.1	0.0	1.2e-07	31.7	0.0	1.1	1	0	0	1	1	1	1	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
Methyltransf_12	PF08242.12	gi|345006051|ref|YP_004808904.1|	-	7.1e-07	29.9	0.0	1.2e-06	29.2	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.6	gi|345006051|ref|YP_004808904.1|	-	1.2e-06	28.5	0.0	1.3e-06	28.3	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Ubie_methyltran	PF01209.18	gi|345006051|ref|YP_004808904.1|	-	2.4e-06	27.1	0.0	3.5e-06	26.5	0.0	1.2	1	0	0	1	1	1	1	ubiE/COQ5	methyltransferase	family
Methyltransf_4	PF02390.17	gi|345006051|ref|YP_004808904.1|	-	7e-05	22.4	0.0	9.8e-05	21.9	0.0	1.2	1	0	0	1	1	1	1	Putative	methyltransferase
FtsJ	PF01728.19	gi|345006051|ref|YP_004808904.1|	-	0.0003	21.0	0.0	0.0004	20.5	0.0	1.2	1	0	0	1	1	1	1	FtsJ-like	methyltransferase
Methyltr_RsmB-F	PF01189.17	gi|345006051|ref|YP_004808904.1|	-	0.018	14.7	0.0	0.024	14.3	0.0	1.1	1	0	0	1	1	1	0	16S	rRNA	methyltransferase	RsmB/F
GCD14	PF08704.10	gi|345006051|ref|YP_004808904.1|	-	0.13	11.9	0.0	0.15	11.7	0.0	1.1	1	0	0	1	1	1	0	tRNA	methyltransferase	complex	GCD14	subunit
MTS	PF05175.14	gi|345006051|ref|YP_004808904.1|	-	0.22	11.1	0.0	0.34	10.4	0.0	1.2	1	0	0	1	1	1	0	Methyltransferase	small	domain
Methyltransf_11	PF08241.12	gi|345006053|ref|YP_004808906.1|	-	8e-18	64.9	0.0	2e-17	63.6	0.0	1.7	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.6	gi|345006053|ref|YP_004808906.1|	-	2.7e-17	63.2	0.1	1e-16	61.4	0.0	2.0	2	0	0	2	2	2	1	Methyltransferase	domain
Methyltransf_31	PF13847.6	gi|345006053|ref|YP_004808906.1|	-	5.9e-16	58.6	0.0	9.1e-16	58.0	0.0	1.4	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.6	gi|345006053|ref|YP_004808906.1|	-	1.6e-12	47.5	0.0	3.2e-12	46.6	0.0	1.6	1	1	0	1	1	1	1	Methyltransferase	domain
MetW	PF07021.12	gi|345006053|ref|YP_004808906.1|	-	3.4e-09	36.6	0.0	5.5e-09	35.9	0.0	1.2	1	0	0	1	1	1	1	Methionine	biosynthesis	protein	MetW
Ubie_methyltran	PF01209.18	gi|345006053|ref|YP_004808906.1|	-	9.7e-09	34.9	0.0	1.7e-08	34.1	0.0	1.3	1	0	0	1	1	1	1	ubiE/COQ5	methyltransferase	family
Methyltransf_12	PF08242.12	gi|345006053|ref|YP_004808906.1|	-	1.6e-07	32.0	0.1	4.8e-07	30.4	0.0	1.9	2	1	0	2	2	1	1	Methyltransferase	domain
Methyltransf_32	PF13679.6	gi|345006053|ref|YP_004808906.1|	-	0.00043	20.3	0.0	0.00085	19.3	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
PCMT	PF01135.19	gi|345006053|ref|YP_004808906.1|	-	0.0031	17.3	0.0	0.0051	16.6	0.0	1.2	1	0	0	1	1	1	1	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
Methyltransf_29	PF03141.16	gi|345006053|ref|YP_004808906.1|	-	0.0035	16.0	0.0	0.0047	15.5	0.0	1.1	1	0	0	1	1	1	1	Putative	S-adenosyl-L-methionine-dependent	methyltransferase
MTS	PF05175.14	gi|345006053|ref|YP_004808906.1|	-	0.0037	16.8	0.1	0.0067	16.0	0.1	1.4	1	0	0	1	1	1	1	Methyltransferase	small	domain
PrmA	PF06325.13	gi|345006053|ref|YP_004808906.1|	-	0.0055	16.1	0.0	0.0088	15.5	0.0	1.2	1	0	0	1	1	1	1	Ribosomal	protein	L11	methyltransferase	(PrmA)
CMAS	PF02353.20	gi|345006053|ref|YP_004808906.1|	-	0.026	13.8	0.0	0.04	13.2	0.0	1.2	1	0	0	1	1	1	0	Mycolic	acid	cyclopropane	synthetase
FtsJ	PF01728.19	gi|345006053|ref|YP_004808906.1|	-	0.047	13.8	0.0	0.061	13.4	0.0	1.3	1	0	0	1	1	1	0	FtsJ-like	methyltransferase
DREV	PF05219.12	gi|345006053|ref|YP_004808906.1|	-	0.13	11.3	0.0	0.18	10.9	0.0	1.3	1	0	0	1	1	1	0	DREV	methyltransferase
CarboxypepD_reg	PF13620.6	gi|345006054|ref|YP_004808907.1|	-	7.4e-06	26.2	12.6	2.2e-05	24.6	6.5	3.9	2	1	1	3	3	3	1	Carboxypeptidase	regulatory-like	domain
NPCBM_assoc	PF10633.9	gi|345006054|ref|YP_004808907.1|	-	8.9e-05	22.7	6.6	0.00011	22.3	1.3	3.5	3	1	0	3	3	3	1	NPCBM-associated,	NEW3	domain	of	alpha-galactosidase
CarbopepD_reg_2	PF13715.6	gi|345006054|ref|YP_004808907.1|	-	0.0015	18.5	0.8	1.5	8.9	0.1	2.8	2	1	0	2	2	2	2	CarboxypepD_reg-like	domain
Big_1	PF02369.16	gi|345006054|ref|YP_004808907.1|	-	0.025	14.6	14.7	0.08	13.0	6.5	4.0	3	1	0	3	3	3	0	Bacterial	Ig-like	domain	(group	1)
fn3_5	PF06280.12	gi|345006054|ref|YP_004808907.1|	-	0.029	15.1	0.3	0.23	12.2	0.1	2.2	1	1	1	2	2	2	0	Fn3-like	domain
Invasin_D3	PF09134.10	gi|345006054|ref|YP_004808907.1|	-	0.18	12.2	12.9	1.1	9.6	6.0	2.7	2	1	0	2	2	2	0	Invasin,	domain	3
AP_endonuc_2	PF01261.24	gi|345006055|ref|YP_004808908.1|	-	7.8e-27	94.1	2.5	1.3e-26	93.3	1.6	1.7	2	0	0	2	2	2	1	Xylose	isomerase-like	TIM	barrel
BPL_LplA_LipB	PF03099.19	gi|345006056|ref|YP_004808909.1|	-	1.9e-09	37.5	0.0	3.3e-09	36.7	0.0	1.3	1	0	0	1	1	1	1	Biotin/lipoate	A/B	protein	ligase	family
DDE_Tnp_1	PF01609.21	gi|345006057|ref|YP_004808910.1|	-	0.027	14.1	0.1	0.14	11.8	0.0	2.1	1	1	0	1	1	1	0	Transposase	DDE	domain
MG2	PF01835.19	gi|345006059|ref|YP_004808912.1|	-	0.014	15.9	0.2	0.018	15.5	0.2	1.2	1	0	0	1	1	1	0	MG2	domain
Mannosidase_ig	PF17786.1	gi|345006059|ref|YP_004808912.1|	-	0.061	13.9	0.5	0.11	13.2	0.5	1.4	1	0	0	1	1	1	0	Mannosidase	Ig/CBM-like	domain
HYR	PF02494.16	gi|345006059|ref|YP_004808912.1|	-	0.084	13.2	1.5	0.17	12.2	0.9	1.8	1	1	1	2	2	2	0	HYR	domain
ATPase	PF06745.13	gi|345006060|ref|YP_004808913.1|	-	3.8e-14	52.6	0.0	4.1e-14	52.5	0.0	1.0	1	0	0	1	1	1	1	KaiC
IstB_IS21	PF01695.17	gi|345006060|ref|YP_004808913.1|	-	5.4e-06	26.3	0.0	5.8e-06	26.2	0.0	1.0	1	0	0	1	1	1	1	IstB-like	ATP	binding	protein
AAA_25	PF13481.6	gi|345006060|ref|YP_004808913.1|	-	1.6e-05	24.6	0.0	2e-05	24.3	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
AAA_16	PF13191.6	gi|345006060|ref|YP_004808913.1|	-	0.00032	21.1	0.0	0.00035	21.0	0.0	1.1	1	0	0	1	1	1	1	AAA	ATPase	domain
AAA_24	PF13479.6	gi|345006060|ref|YP_004808913.1|	-	0.00087	19.1	0.0	0.00091	19.0	0.0	1.0	1	0	0	1	1	1	1	AAA	domain
RecA	PF00154.21	gi|345006060|ref|YP_004808913.1|	-	0.0028	17.2	0.0	0.0029	17.1	0.0	1.0	1	0	0	1	1	1	1	recA	bacterial	DNA	recombination	protein
DnaB_C	PF03796.15	gi|345006060|ref|YP_004808913.1|	-	0.0041	16.5	0.0	0.0041	16.5	0.0	1.0	1	0	0	1	1	1	1	DnaB-like	helicase	C	terminal	domain
AAA_18	PF13238.6	gi|345006060|ref|YP_004808913.1|	-	0.012	16.2	0.1	0.017	15.7	0.1	1.4	1	1	0	1	1	1	0	AAA	domain
AAA_19	PF13245.6	gi|345006060|ref|YP_004808913.1|	-	0.013	15.8	0.0	0.015	15.6	0.0	1.1	1	0	0	1	1	1	0	AAA	domain
MEDS	PF14417.6	gi|345006060|ref|YP_004808913.1|	-	0.014	15.2	0.0	0.017	14.9	0.0	1.1	1	0	0	1	1	1	0	MEDS:	MEthanogen/methylotroph,	DcmR	Sensory	domain
AAA_14	PF13173.6	gi|345006060|ref|YP_004808913.1|	-	0.016	15.2	0.0	0.017	15.2	0.0	1.1	1	0	0	1	1	1	0	AAA	domain
AAA_7	PF12775.7	gi|345006060|ref|YP_004808913.1|	-	0.017	14.6	0.0	0.017	14.6	0.0	1.1	1	0	0	1	1	1	0	P-loop	containing	dynein	motor	region
AAA	PF00004.29	gi|345006060|ref|YP_004808913.1|	-	0.023	15.1	0.0	0.025	15.0	0.0	1.2	1	0	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
GvpD	PF07088.11	gi|345006060|ref|YP_004808913.1|	-	0.026	13.2	0.0	0.027	13.1	0.0	1.0	1	0	0	1	1	1	0	GvpD	gas	vesicle	protein
AAA_5	PF07728.14	gi|345006060|ref|YP_004808913.1|	-	0.048	13.6	0.0	0.049	13.6	0.0	1.1	1	0	0	1	1	1	0	AAA	domain	(dynein-related	subfamily)
CPT	PF07931.12	gi|345006060|ref|YP_004808913.1|	-	0.054	13.3	0.0	0.055	13.3	0.0	1.0	1	0	0	1	1	1	0	Chloramphenicol	phosphotransferase-like	protein
ResIII	PF04851.15	gi|345006060|ref|YP_004808913.1|	-	0.069	13.1	0.0	0.08	12.9	0.0	1.1	1	0	0	1	1	1	0	Type	III	restriction	enzyme,	res	subunit
Zeta_toxin	PF06414.12	gi|345006060|ref|YP_004808913.1|	-	0.077	12.3	0.0	0.079	12.2	0.0	1.1	1	0	0	1	1	1	0	Zeta	toxin
AAA_33	PF13671.6	gi|345006060|ref|YP_004808913.1|	-	0.078	13.1	0.0	0.09	12.9	0.0	1.2	1	0	0	1	1	1	0	AAA	domain
KTI12	PF08433.10	gi|345006060|ref|YP_004808913.1|	-	0.08	12.4	0.0	0.088	12.2	0.0	1.0	1	0	0	1	1	1	0	Chromatin	associated	protein	KTI12
MeaB	PF03308.16	gi|345006060|ref|YP_004808913.1|	-	0.13	11.2	0.0	0.14	11.1	0.0	1.1	1	0	0	1	1	1	0	Methylmalonyl	Co-A	mutase-associated	GTPase	MeaB
RNA_helicase	PF00910.22	gi|345006060|ref|YP_004808913.1|	-	0.13	12.6	0.0	0.14	12.5	0.0	1.2	1	1	0	1	1	1	0	RNA	helicase
cobW	PF02492.19	gi|345006060|ref|YP_004808913.1|	-	0.15	11.7	0.0	0.15	11.6	0.0	1.1	1	0	0	1	1	1	0	CobW/HypB/UreG,	nucleotide-binding	domain
NTPase_1	PF03266.15	gi|345006060|ref|YP_004808913.1|	-	0.15	11.9	0.1	0.2	11.6	0.1	1.3	1	1	0	1	1	1	0	NTPase
TIP49	PF06068.13	gi|345006060|ref|YP_004808913.1|	-	0.18	11.0	0.0	0.19	10.9	0.0	1.1	1	0	0	1	1	1	0	TIP49	P-loop	domain
Usp	PF00582.26	gi|345006061|ref|YP_004808914.1|	-	2.7e-07	31.2	0.9	1e-05	26.0	0.9	2.1	1	1	0	1	1	1	1	Universal	stress	protein	family
PPR_1	PF12854.7	gi|345006062|ref|YP_004808915.1|	-	0.062	13.0	1.6	0.43	10.3	0.1	2.2	2	0	0	2	2	2	0	PPR	repeat
TPR_7	PF13176.6	gi|345006062|ref|YP_004808915.1|	-	0.18	11.9	0.1	1.4	9.1	0.1	2.0	1	1	1	2	2	2	0	Tetratricopeptide	repeat
PPR	PF01535.20	gi|345006062|ref|YP_004808915.1|	-	0.24	11.7	0.1	0.7	10.3	0.0	1.7	2	0	0	2	2	2	0	PPR	repeat
RIO1	PF01163.22	gi|345006063|ref|YP_004808916.1|	-	1.9e-42	145.0	0.2	2.7e-42	144.5	0.2	1.1	1	0	0	1	1	1	1	RIO1	family
Rio2_N	PF09202.11	gi|345006063|ref|YP_004808916.1|	-	4.5e-27	94.1	0.1	9.6e-27	93.0	0.1	1.6	1	0	0	1	1	1	1	Rio2,	N-terminal
APH	PF01636.23	gi|345006063|ref|YP_004808916.1|	-	4.6e-06	26.7	1.2	0.019	14.9	0.0	2.9	1	1	1	2	2	2	2	Phosphotransferase	enzyme	family
Pkinase	PF00069.25	gi|345006063|ref|YP_004808916.1|	-	0.024	14.0	0.0	0.047	13.1	0.0	1.4	1	1	0	1	1	1	0	Protein	kinase	domain
Pkinase_fungal	PF17667.1	gi|345006063|ref|YP_004808916.1|	-	0.12	11.1	0.0	0.13	11.1	0.0	1.1	1	0	0	1	1	1	0	Fungal	protein	kinase
Lactamase_B	PF00753.27	gi|345006065|ref|YP_004808918.1|	-	1.3e-24	87.3	7.2	1.6e-24	87.0	7.2	1.1	1	0	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Lactamase_B_2	PF12706.7	gi|345006065|ref|YP_004808918.1|	-	0.018	14.6	1.8	0.024	14.2	0.7	1.7	1	1	1	2	2	2	0	Beta-lactamase	superfamily	domain
Lactamase_B_6	PF16661.5	gi|345006065|ref|YP_004808918.1|	-	0.045	13.2	0.0	0.063	12.7	0.0	1.2	1	0	0	1	1	1	0	Metallo-beta-lactamase	superfamily	domain
DUF4911	PF16256.5	gi|345006065|ref|YP_004808918.1|	-	0.085	12.8	0.2	0.32	11.0	0.0	2.0	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4911)
DNA_ligase_aden	PF01653.18	gi|345006066|ref|YP_004808919.1|	-	1.9e-99	332.8	0.0	3.9e-77	259.5	0.0	2.1	1	1	1	2	2	2	2	NAD-dependent	DNA	ligase	adenylation	domain
DNA_ligase_OB	PF03120.16	gi|345006066|ref|YP_004808919.1|	-	8.3e-30	102.5	2.4	1.5e-29	101.7	2.4	1.4	1	0	0	1	1	1	1	NAD-dependent	DNA	ligase	OB-fold	domain
HHH_5	PF14520.6	gi|345006066|ref|YP_004808919.1|	-	3.3e-19	69.3	1.3	2.1e-09	37.8	0.2	2.6	2	0	0	2	2	2	2	Helix-hairpin-helix	domain
HHH_2	PF12826.7	gi|345006066|ref|YP_004808919.1|	-	3.1e-18	65.6	1.9	1.9e-15	56.7	0.1	2.7	2	0	0	2	2	2	2	Helix-hairpin-helix	motif
BRCT	PF00533.26	gi|345006066|ref|YP_004808919.1|	-	2.1e-09	37.6	0.0	3.9e-09	36.7	0.0	1.4	1	0	0	1	1	1	1	BRCA1	C	Terminus	(BRCT)	domain
HHH	PF00633.23	gi|345006066|ref|YP_004808919.1|	-	1.2e-08	34.4	4.0	0.031	14.1	0.1	4.8	4	0	0	4	4	4	3	Helix-hairpin-helix	motif
DNA_ligase_ZBD	PF03119.16	gi|345006066|ref|YP_004808919.1|	-	1.3e-06	28.3	3.3	3.9e-06	26.8	3.3	1.9	1	0	0	1	1	1	1	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
5_3_exonuc	PF01367.20	gi|345006066|ref|YP_004808919.1|	-	0.00022	21.8	0.2	0.47	11.1	0.0	3.7	3	1	1	4	4	4	1	5'-3'	exonuclease,	C-terminal	SAM	fold
PTCB-BRCT	PF12738.7	gi|345006066|ref|YP_004808919.1|	-	0.023	14.6	0.0	0.049	13.6	0.0	1.5	1	0	0	1	1	1	0	twin	BRCT	domain
HHH_8	PF14716.6	gi|345006066|ref|YP_004808919.1|	-	0.073	13.4	1.4	40	4.7	0.0	4.5	3	1	2	5	5	5	0	Helix-hairpin-helix	domain
Fer2	PF00111.27	gi|345006067|ref|YP_004808920.1|	-	4.1e-13	49.1	0.3	7.1e-13	48.3	0.3	1.3	1	0	0	1	1	1	1	2Fe-2S	iron-sulfur	cluster	binding	domain
MatE	PF01554.18	gi|345006068|ref|YP_004808921.1|	-	1.3e-62	210.2	29.7	1.1e-32	112.9	15.1	2.5	2	0	0	2	2	2	2	MatE
Polysacc_synt_C	PF14667.6	gi|345006068|ref|YP_004808921.1|	-	1.5e-08	34.8	8.7	1.5e-08	34.8	8.7	4.1	4	2	0	4	4	4	2	Polysaccharide	biosynthesis	C-terminal	domain
zf-CHY	PF05495.12	gi|345006069|ref|YP_004808922.1|	-	1.9e-13	50.7	11.0	3.1e-13	50.0	11.0	1.4	1	0	0	1	1	1	1	CHY	zinc	finger
IBR	PF01485.21	gi|345006069|ref|YP_004808922.1|	-	0.026	14.7	3.1	0.026	14.7	3.1	2.3	1	1	1	2	2	2	0	IBR	domain,	a	half	RING-finger	domain
MC1	PF05854.11	gi|345006072|ref|YP_004808925.1|	-	6.4e-45	151.4	0.3	8e-45	151.1	0.3	1.1	1	0	0	1	1	1	1	Non-histone	chromosomal	protein	MC1
DUF4776	PF16003.5	gi|345006072|ref|YP_004808925.1|	-	0.012	14.6	0.1	0.012	14.6	0.1	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4776)
SymE_toxin	PF08845.10	gi|345006073|ref|YP_004808926.1|	-	0.0027	17.7	0.0	0.0027	17.7	0.0	1.2	1	0	0	1	1	1	1	Toxin	SymE,	type	I	toxin-antitoxin	system
MazE_antitoxin	PF04014.18	gi|345006073|ref|YP_004808926.1|	-	0.025	14.5	0.3	0.037	14.0	0.3	1.3	1	0	0	1	1	1	0	Antidote-toxin	recognition	MazE,	bacterial	antitoxin
DHO_dh	PF01180.21	gi|345006074|ref|YP_004808927.1|	-	6.2e-82	275.1	0.0	7.2e-82	274.9	0.0	1.0	1	0	0	1	1	1	1	Dihydroorotate	dehydrogenase
NMO	PF03060.15	gi|345006074|ref|YP_004808927.1|	-	1.3e-05	24.8	0.3	2.8e-05	23.7	0.2	1.5	2	0	0	2	2	2	1	Nitronate	monooxygenase
His_biosynth	PF00977.21	gi|345006074|ref|YP_004808927.1|	-	0.15	11.5	0.0	0.3	10.5	0.0	1.4	1	0	0	1	1	1	0	Histidine	biosynthesis	protein
TT_ORF2a	PF08197.11	gi|345006074|ref|YP_004808927.1|	-	0.32	11.0	2.0	0.58	10.2	0.4	2.1	2	0	0	2	2	2	0	pORF2a	truncated	protein
Helicase_C_2	PF13307.6	gi|345006076|ref|YP_004808929.1|	-	4.6e-34	118.1	0.0	1.3e-33	116.6	0.0	1.7	1	0	0	1	1	1	1	Helicase	C-terminal	domain
DEAD_2	PF06733.15	gi|345006076|ref|YP_004808929.1|	-	1.1e-21	77.3	3.0	2e-20	73.2	3.0	2.1	1	1	0	1	1	1	1	DEAD_2
DEAD	PF00270.29	gi|345006076|ref|YP_004808929.1|	-	1.5e-07	31.3	0.0	3.7e-05	23.5	0.0	3.0	3	0	0	3	3	3	1	DEAD/DEAH	box	helicase
ResIII	PF04851.15	gi|345006076|ref|YP_004808929.1|	-	4.7e-05	23.5	0.0	0.005	16.8	0.0	2.4	1	1	0	1	1	1	1	Type	III	restriction	enzyme,	res	subunit
Zot	PF05707.12	gi|345006076|ref|YP_004808929.1|	-	0.0003	20.5	0.0	0.026	14.2	0.0	2.3	2	0	0	2	2	2	1	Zonular	occludens	toxin	(Zot)
DUF2075	PF09848.9	gi|345006076|ref|YP_004808929.1|	-	0.00043	19.6	1.1	0.044	13.0	0.0	2.5	1	1	0	2	2	2	1	Uncharacterized	conserved	protein	(DUF2075)
ATPase	PF06745.13	gi|345006076|ref|YP_004808929.1|	-	0.0027	17.1	0.0	0.0051	16.2	0.0	1.4	1	0	0	1	1	1	1	KaiC
AAA	PF00004.29	gi|345006076|ref|YP_004808929.1|	-	0.0036	17.7	0.0	0.86	10.0	0.0	2.7	2	0	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
PhoH	PF02562.16	gi|345006076|ref|YP_004808929.1|	-	0.06	12.8	0.0	0.15	11.5	0.0	1.6	1	0	0	1	1	1	0	PhoH-like	protein
AAA_22	PF13401.6	gi|345006076|ref|YP_004808929.1|	-	0.077	13.3	1.6	0.91	9.8	0.2	2.6	2	1	0	2	2	2	0	AAA	domain
Alk_phosphatase	PF00245.20	gi|345006076|ref|YP_004808929.1|	-	0.087	11.8	0.4	0.19	10.7	0.4	1.5	1	0	0	1	1	1	0	Alkaline	phosphatase
AAA_16	PF13191.6	gi|345006076|ref|YP_004808929.1|	-	0.1	12.9	9.4	0.17	12.2	3.5	3.3	2	2	0	2	2	2	0	AAA	ATPase	domain
Mg_chelatase	PF01078.21	gi|345006076|ref|YP_004808929.1|	-	0.14	11.5	0.0	0.28	10.5	0.0	1.4	1	0	0	1	1	1	0	Magnesium	chelatase,	subunit	ChlI
HBB	PF06777.11	gi|345006076|ref|YP_004808929.1|	-	0.14	11.8	1.1	0.5	10.0	0.0	2.5	3	0	0	3	3	3	0	Helical	and	beta-bridge	domain
AAA_30	PF13604.6	gi|345006076|ref|YP_004808929.1|	-	0.26	11.0	0.1	0.26	11.0	0.1	2.5	2	1	0	3	3	3	0	AAA	domain
AAA_11	PF13086.6	gi|345006076|ref|YP_004808929.1|	-	0.71	9.6	5.1	2	8.1	0.0	2.4	1	1	1	2	2	2	0	AAA	domain
p450	PF00067.22	gi|345006077|ref|YP_004808930.1|	-	2.7e-86	290.1	0.0	3.3e-86	289.9	0.0	1.0	1	0	0	1	1	1	1	Cytochrome	P450
2_5_RNA_ligase2	PF13563.6	gi|345006078|ref|YP_004808931.1|	-	2.1e-15	57.0	0.0	2.6e-15	56.7	0.0	1.3	1	1	0	1	1	1	1	2'-5'	RNA	ligase	superfamily
LigT_PEase	PF02834.16	gi|345006078|ref|YP_004808931.1|	-	2.3e-08	34.1	0.1	0.00052	20.1	0.0	2.8	2	1	0	2	2	2	2	LigT	like	Phosphoesterase
AKAP7_NLS	PF10469.9	gi|345006078|ref|YP_004808931.1|	-	3.2e-06	27.2	0.0	3.8e-06	26.9	0.0	1.1	1	0	0	1	1	1	1	AKAP7	2'5'	RNA	ligase-like	domain
DUF3396	PF11876.8	gi|345006078|ref|YP_004808931.1|	-	0.1	12.1	0.0	0.18	11.3	0.0	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3396)
AI-2E_transport	PF01594.16	gi|345006079|ref|YP_004808932.1|	-	0.017	14.3	7.9	0.019	14.1	7.9	1.0	1	0	0	1	1	1	0	AI-2E	family	transporter
BIV_Env	PF05858.12	gi|345006079|ref|YP_004808932.1|	-	0.33	9.1	5.0	0.33	9.1	5.0	1.0	1	0	0	1	1	1	0	Bovine	immunodeficiency	virus	surface	protein	(SU)
DUF5337	PF17272.2	gi|345006079|ref|YP_004808932.1|	-	0.4	10.5	6.8	4.5	7.2	0.5	2.1	2	0	0	2	2	2	0	Family	of	unknown	function	(DUF5337)
DUF2207	PF09972.9	gi|345006079|ref|YP_004808932.1|	-	1.6	7.4	4.5	1.5	7.5	4.5	1.0	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2207)
DUF2755	PF10954.8	gi|345006079|ref|YP_004808932.1|	-	2	8.4	7.8	0.35	10.8	4.2	1.6	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF2755)
DUF2839	PF10999.8	gi|345006079|ref|YP_004808932.1|	-	5.8	7.4	10.0	0.23	11.9	1.7	2.0	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2839)
DUF4897	PF16238.5	gi|345006080|ref|YP_004808933.1|	-	7.6e-06	25.9	0.0	1.2e-05	25.2	0.0	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4897)
MarR_2	PF12802.7	gi|345006080|ref|YP_004808933.1|	-	0.0035	17.2	0.1	0.007	16.2	0.1	1.4	1	0	0	1	1	1	1	MarR	family
HTH_24	PF13412.6	gi|345006080|ref|YP_004808933.1|	-	0.1	12.2	0.0	0.18	11.4	0.0	1.4	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
DUF5011	PF16403.5	gi|345006080|ref|YP_004808933.1|	-	0.1	12.7	1.9	0.25	11.5	0.3	2.2	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF5011)
ABC_tran_CTD	PF16326.5	gi|345006081|ref|YP_004808934.1|	-	0.001	19.3	1.6	0.0038	17.5	1.6	1.9	1	1	0	1	1	1	1	ABC	transporter	C-terminal	domain
M	PF02370.16	gi|345006081|ref|YP_004808934.1|	-	0.049	14.2	1.4	0.2	12.3	0.6	2.5	2	0	0	2	2	2	0	M	protein	repeat
CdvA	PF18822.1	gi|345006081|ref|YP_004808934.1|	-	0.093	12.6	0.4	0.15	11.9	0.4	1.2	1	0	0	1	1	1	0	CdvA-like	coiled-coil	domain
Roughex	PF06020.11	gi|345006081|ref|YP_004808934.1|	-	0.22	10.6	4.6	0.27	10.3	4.6	1.2	1	0	0	1	1	1	0	Drosophila	roughex	protein
AAA_13	PF13166.6	gi|345006081|ref|YP_004808934.1|	-	0.44	9.1	2.8	0.66	8.5	2.8	1.2	1	0	0	1	1	1	0	AAA	domain
ERM	PF00769.19	gi|345006081|ref|YP_004808934.1|	-	0.63	9.8	11.2	0.68	9.7	10.8	1.4	1	1	0	1	1	1	0	Ezrin/radixin/moesin	family
UvrB_inter	PF17757.1	gi|345006082|ref|YP_004808935.1|	-	2.4e-31	107.8	0.1	1e-30	105.8	0.0	2.2	2	0	0	2	2	2	1	UvrB	interaction	domain
UvrB	PF12344.8	gi|345006082|ref|YP_004808935.1|	-	5e-20	71.1	0.9	9e-20	70.2	0.9	1.4	1	0	0	1	1	1	1	Ultra-violet	resistance	protein	B
Helicase_C	PF00271.31	gi|345006082|ref|YP_004808935.1|	-	5.8e-18	65.3	0.1	1.5e-17	63.9	0.1	1.7	1	0	0	1	1	1	1	Helicase	conserved	C-terminal	domain
UVR	PF02151.19	gi|345006082|ref|YP_004808935.1|	-	5.8e-09	35.4	6.3	5.8e-09	35.4	6.3	2.8	3	0	0	3	3	3	1	UvrB/uvrC	motif
ResIII	PF04851.15	gi|345006082|ref|YP_004808935.1|	-	1.6e-07	31.5	0.0	1.3e-06	28.5	0.0	2.2	2	0	0	2	2	2	1	Type	III	restriction	enzyme,	res	subunit
DEAD	PF00270.29	gi|345006082|ref|YP_004808935.1|	-	0.0017	18.2	0.1	0.013	15.2	0.0	2.5	3	1	0	3	3	3	1	DEAD/DEAH	box	helicase
AAA_30	PF13604.6	gi|345006082|ref|YP_004808935.1|	-	0.0071	16.1	0.2	0.13	12.0	0.0	2.6	2	1	1	3	3	3	1	AAA	domain
UB2H	PF14814.6	gi|345006082|ref|YP_004808935.1|	-	0.0082	16.2	0.0	0.095	12.7	0.0	2.7	1	1	0	1	1	1	1	Bifunctional	transglycosylase	second	domain
AAA_19	PF13245.6	gi|345006082|ref|YP_004808935.1|	-	0.014	15.7	0.1	5.6	7.3	0.0	2.8	2	0	0	2	2	2	0	AAA	domain
DUF87	PF01935.17	gi|345006082|ref|YP_004808935.1|	-	0.053	13.6	0.6	0.27	11.3	0.1	2.3	2	0	0	2	2	2	0	Helicase	HerA,	central	domain
RPN7	PF10602.9	gi|345006082|ref|YP_004808935.1|	-	0.063	13.0	0.8	24	4.6	0.1	3.3	3	0	0	3	3	3	0	26S	proteasome	subunit	RPN7
Rhodanese	PF00581.20	gi|345006085|ref|YP_004808938.1|	-	5e-37	126.7	0.3	1e-17	64.6	0.0	2.1	2	0	0	2	2	2	2	Rhodanese-like	domain
Rhodanese	PF00581.20	gi|345006086|ref|YP_004808939.1|	-	5.4e-32	110.5	0.0	8.2e-16	58.5	0.0	2.1	2	0	0	2	2	2	2	Rhodanese-like	domain
AI-2E_transport	PF01594.16	gi|345006087|ref|YP_004808940.1|	-	2.1e-29	102.7	37.4	3.3e-29	102.1	37.4	1.3	1	1	0	1	1	1	1	AI-2E	family	transporter
SBP_bac_6	PF13343.6	gi|345006088|ref|YP_004808941.1|	-	2e-21	76.5	0.0	2.8e-21	76.1	0.0	1.1	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_8	PF13416.6	gi|345006088|ref|YP_004808941.1|	-	2.4e-14	53.8	0.2	3.3e-14	53.4	0.2	1.2	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_11	PF13531.6	gi|345006088|ref|YP_004808941.1|	-	0.0031	17.3	0.1	0.0045	16.8	0.1	1.4	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
TAT_signal	PF10518.9	gi|345006088|ref|YP_004808941.1|	-	0.0058	16.4	3.2	0.01	15.6	3.2	1.4	1	0	0	1	1	1	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
Methyltransf_11	PF08241.12	gi|345006089|ref|YP_004808942.1|	-	9.3e-23	80.7	0.0	1.8e-22	79.8	0.0	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.6	gi|345006089|ref|YP_004808942.1|	-	4.6e-19	68.9	0.0	8.5e-19	68.1	0.0	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.6	gi|345006089|ref|YP_004808942.1|	-	4.6e-16	59.0	0.0	6.5e-16	58.5	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.6	gi|345006089|ref|YP_004808942.1|	-	3.9e-15	56.1	0.0	5.3e-15	55.6	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.12	gi|345006089|ref|YP_004808942.1|	-	1.3e-09	38.6	0.0	2.1e-09	38.0	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Ubie_methyltran	PF01209.18	gi|345006089|ref|YP_004808942.1|	-	3.1e-09	36.5	0.0	5.3e-09	35.8	0.0	1.3	2	0	0	2	2	2	1	ubiE/COQ5	methyltransferase	family
Methyltransf_9	PF08003.11	gi|345006089|ref|YP_004808942.1|	-	8.7e-06	24.9	0.0	1.2e-05	24.5	0.0	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1698)
MetW	PF07021.12	gi|345006089|ref|YP_004808942.1|	-	6.9e-05	22.5	0.0	0.00011	21.8	0.0	1.3	1	0	0	1	1	1	1	Methionine	biosynthesis	protein	MetW
Methyltransf_2	PF00891.18	gi|345006089|ref|YP_004808942.1|	-	0.0086	15.4	0.0	0.012	14.9	0.0	1.3	1	0	0	1	1	1	1	O-methyltransferase	domain
PCMT	PF01135.19	gi|345006089|ref|YP_004808942.1|	-	0.011	15.4	0.0	0.023	14.5	0.0	1.6	1	1	0	1	1	1	0	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
CMAS	PF02353.20	gi|345006089|ref|YP_004808942.1|	-	0.047	13.0	0.0	0.067	12.5	0.0	1.3	1	1	0	1	1	1	0	Mycolic	acid	cyclopropane	synthetase
N6_N4_Mtase	PF01555.18	gi|345006089|ref|YP_004808942.1|	-	0.084	12.6	0.0	7.9	6.1	0.0	2.2	2	0	0	2	2	2	0	DNA	methylase
PrmA	PF06325.13	gi|345006089|ref|YP_004808942.1|	-	0.15	11.4	0.0	0.27	10.6	0.0	1.3	1	0	0	1	1	1	0	Ribosomal	protein	L11	methyltransferase	(PrmA)
ATPase	PF06745.13	gi|345006090|ref|YP_004808943.1|	-	0.00059	19.3	0.0	0.00074	18.9	0.0	1.1	1	0	0	1	1	1	1	KaiC
DUF3153	PF11353.8	gi|345006092|ref|YP_004808945.1|	-	0.16	11.5	0.6	0.16	11.5	0.6	1.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3153)
DUF751	PF05421.11	gi|345006092|ref|YP_004808945.1|	-	0.18	12.6	1.5	0.17	12.6	1.5	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF751)
DUF2072	PF09845.9	gi|345006093|ref|YP_004808946.1|	-	6.7e-32	110.5	13.1	1.5e-27	96.5	13.1	2.9	1	1	0	1	1	1	1	Zn-ribbon	containing	protein
Zn-ribbon_8	PF09723.10	gi|345006093|ref|YP_004808946.1|	-	0.017	15.2	3.3	0.038	14.1	3.3	1.6	1	0	0	1	1	1	0	Zinc	ribbon	domain
HypA	PF01155.19	gi|345006093|ref|YP_004808946.1|	-	0.1	12.7	0.7	0.17	11.9	0.7	1.3	1	0	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
zf-C2H2_11	PF16622.5	gi|345006093|ref|YP_004808946.1|	-	0.24	11.2	0.0	0.52	10.1	0.0	1.6	1	0	0	1	1	1	0	zinc-finger	C2H2-type
zinc_ribbon_2	PF13240.6	gi|345006093|ref|YP_004808946.1|	-	0.27	11.0	4.8	0.58	9.9	4.8	1.6	1	0	0	1	1	1	0	zinc-ribbon	domain
TF_Zn_Ribbon	PF08271.12	gi|345006093|ref|YP_004808946.1|	-	1.2	8.8	4.3	7.1	6.2	0.3	2.4	1	1	1	2	2	2	0	TFIIB	zinc-binding
DUF1451	PF07295.11	gi|345006093|ref|YP_004808946.1|	-	5.9	6.9	10.8	0.18	11.8	2.1	2.5	3	0	0	3	3	3	0	Zinc-ribbon	containing	domain
DUF4661	PF15576.6	gi|345006093|ref|YP_004808946.1|	-	6	6.7	14.9	6.9	6.5	14.0	1.4	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4661)
DUF1178	PF06676.11	gi|345006093|ref|YP_004808946.1|	-	9	6.7	9.5	1.3	9.4	0.2	2.5	2	1	1	3	3	3	0	Protein	of	unknown	function	(DUF1178)
DUF2073	PF09846.9	gi|345006094|ref|YP_004808947.1|	-	3.7e-47	158.5	0.6	4.4e-47	158.3	0.6	1.1	1	0	0	1	1	1	1	Uncharacterized	protein	conserved	in	archaea	(DUF2073)
MMR_HSR1	PF01926.23	gi|345006095|ref|YP_004808948.1|	-	1.1e-14	54.4	0.0	1.6e-14	54.0	0.0	1.2	1	0	0	1	1	1	1	50S	ribosome-binding	GTPase
GTP_EFTU	PF00009.27	gi|345006095|ref|YP_004808948.1|	-	1.3e-10	41.1	0.3	0.00038	20.1	0.0	3.4	1	1	1	2	2	2	2	Elongation	factor	Tu	GTP	binding	domain
Arf	PF00025.21	gi|345006095|ref|YP_004808948.1|	-	5.3e-06	26.0	0.0	0.0022	17.5	0.1	2.7	1	1	1	3	3	3	1	ADP-ribosylation	factor	family
FeoB_N	PF02421.18	gi|345006095|ref|YP_004808948.1|	-	1.1e-05	25.0	0.4	0.00013	21.5	0.4	2.4	1	1	0	1	1	1	1	Ferrous	iron	transport	protein	B
Septin	PF00735.18	gi|345006095|ref|YP_004808948.1|	-	0.00032	20.1	0.1	0.00081	18.8	0.0	1.5	1	1	1	2	2	2	1	Septin
MMR_HSR1_Xtn	PF16897.5	gi|345006095|ref|YP_004808948.1|	-	0.00048	20.1	0.1	0.0009	19.2	0.0	1.5	1	1	0	1	1	1	1	C-terminal	region	of	MMR_HSR1	domain
Roc	PF08477.13	gi|345006095|ref|YP_004808948.1|	-	0.00078	19.7	0.0	0.02	15.1	0.0	2.2	1	1	1	2	2	2	1	Ras	of	Complex,	Roc,	domain	of	DAPkinase
SRPRB	PF09439.10	gi|345006095|ref|YP_004808948.1|	-	0.0011	18.4	0.0	0.081	12.3	0.0	2.2	2	0	0	2	2	2	1	Signal	recognition	particle	receptor	beta	subunit
AAA_18	PF13238.6	gi|345006095|ref|YP_004808948.1|	-	0.0015	19.1	0.0	0.0041	17.6	0.0	1.8	1	1	0	1	1	1	1	AAA	domain
NB-ARC	PF00931.22	gi|345006095|ref|YP_004808948.1|	-	0.0018	17.5	0.0	0.0031	16.7	0.0	1.4	1	0	0	1	1	1	1	NB-ARC	domain
AAA	PF00004.29	gi|345006095|ref|YP_004808948.1|	-	0.0037	17.7	0.1	0.012	16.0	0.1	2.0	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_24	PF13479.6	gi|345006095|ref|YP_004808948.1|	-	0.0038	17.0	0.0	0.0073	16.1	0.0	1.4	1	0	0	1	1	1	1	AAA	domain
AAA_28	PF13521.6	gi|345006095|ref|YP_004808948.1|	-	0.0049	17.1	0.1	0.043	14.1	0.1	2.1	1	1	1	2	2	2	1	AAA	domain
AAA_16	PF13191.6	gi|345006095|ref|YP_004808948.1|	-	0.0057	17.1	0.0	0.012	16.0	0.0	1.8	1	1	0	1	1	1	1	AAA	ATPase	domain
RNA_helicase	PF00910.22	gi|345006095|ref|YP_004808948.1|	-	0.0061	16.9	0.0	0.014	15.8	0.0	1.7	2	0	0	2	2	2	1	RNA	helicase
MeaB	PF03308.16	gi|345006095|ref|YP_004808948.1|	-	0.0072	15.3	0.4	0.33	9.9	0.0	2.8	2	1	0	2	2	2	1	Methylmalonyl	Co-A	mutase-associated	GTPase	MeaB
Dynamin_N	PF00350.23	gi|345006095|ref|YP_004808948.1|	-	0.0088	16.1	0.0	1.1	9.2	0.0	2.3	1	1	0	2	2	2	1	Dynamin	family
ATPase_2	PF01637.18	gi|345006095|ref|YP_004808948.1|	-	0.019	14.9	0.0	0.03	14.2	0.0	1.7	1	1	0	1	1	1	0	ATPase	domain	predominantly	from	Archaea
Gtr1_RagA	PF04670.12	gi|345006095|ref|YP_004808948.1|	-	0.035	13.5	0.0	0.63	9.4	0.0	2.2	2	1	0	2	2	2	0	Gtr1/RagA	G	protein	conserved	region
ABC_tran	PF00005.27	gi|345006095|ref|YP_004808948.1|	-	0.037	14.5	0.0	0.052	14.0	0.0	1.5	1	1	0	1	1	1	0	ABC	transporter
cobW	PF02492.19	gi|345006095|ref|YP_004808948.1|	-	0.054	13.1	0.2	9.1	5.8	0.0	2.4	2	1	0	2	2	2	0	CobW/HypB/UreG,	nucleotide-binding	domain
RuvB_N	PF05496.12	gi|345006095|ref|YP_004808948.1|	-	0.062	13.1	0.0	0.18	11.6	0.0	1.7	2	0	0	2	2	2	0	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
ATP-synt_ab	PF00006.25	gi|345006095|ref|YP_004808948.1|	-	0.066	12.9	0.0	0.16	11.6	0.0	1.4	1	1	0	1	1	1	0	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
AAA_25	PF13481.6	gi|345006095|ref|YP_004808948.1|	-	0.083	12.4	0.0	0.21	11.2	0.0	1.8	1	1	0	1	1	1	0	AAA	domain
NACHT	PF05729.12	gi|345006095|ref|YP_004808948.1|	-	0.093	12.6	0.0	0.15	11.9	0.0	1.4	1	0	0	1	1	1	0	NACHT	domain
Cdc6_C	PF09079.11	gi|345006096|ref|YP_004808949.1|	-	2e-23	82.2	0.1	5.1e-23	80.9	0.1	1.7	1	0	0	1	1	1	1	CDC6,	C	terminal	winged	helix	domain
AAA_16	PF13191.6	gi|345006096|ref|YP_004808949.1|	-	4.2e-11	43.5	0.8	1.2e-10	42.0	0.0	2.0	2	0	0	2	2	2	1	AAA	ATPase	domain
AAA	PF00004.29	gi|345006096|ref|YP_004808949.1|	-	4.1e-08	33.7	0.0	0.0028	18.1	0.0	2.5	2	0	0	2	2	2	2	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_22	PF13401.6	gi|345006096|ref|YP_004808949.1|	-	3.3e-07	30.7	1.8	7.3e-06	26.3	0.5	2.8	2	1	0	2	2	2	1	AAA	domain
AAA_2	PF07724.14	gi|345006096|ref|YP_004808949.1|	-	0.00033	20.8	0.0	0.0053	16.9	0.0	2.3	1	1	0	1	1	1	1	AAA	domain	(Cdc48	subfamily)
TniB	PF05621.11	gi|345006096|ref|YP_004808949.1|	-	0.0016	17.9	0.1	0.016	14.7	0.0	2.4	2	0	0	2	2	2	1	Bacterial	TniB	protein
ATPase_2	PF01637.18	gi|345006096|ref|YP_004808949.1|	-	0.0019	18.2	0.5	0.0095	15.9	0.5	2.1	1	1	0	1	1	1	1	ATPase	domain	predominantly	from	Archaea
Sigma54_activat	PF00158.26	gi|345006096|ref|YP_004808949.1|	-	0.0027	17.5	0.0	0.0065	16.2	0.0	1.6	1	0	0	1	1	1	1	Sigma-54	interaction	domain
AAA_18	PF13238.6	gi|345006096|ref|YP_004808949.1|	-	0.0031	18.1	0.0	0.0077	16.8	0.0	1.7	1	0	0	1	1	1	1	AAA	domain
DUF815	PF05673.13	gi|345006096|ref|YP_004808949.1|	-	0.0031	16.7	0.0	0.006	15.8	0.0	1.4	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF815)
T2SSE	PF00437.20	gi|345006096|ref|YP_004808949.1|	-	0.0072	15.4	0.0	0.017	14.2	0.0	1.7	1	0	0	1	1	1	1	Type	II/IV	secretion	system	protein
RuvB_N	PF05496.12	gi|345006096|ref|YP_004808949.1|	-	0.0076	16.0	0.1	0.022	14.5	0.0	1.8	2	0	0	2	2	2	1	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
NB-ARC	PF00931.22	gi|345006096|ref|YP_004808949.1|	-	0.02	14.1	0.0	0.035	13.3	0.0	1.4	1	0	0	1	1	1	0	NB-ARC	domain
ABC_tran	PF00005.27	gi|345006096|ref|YP_004808949.1|	-	0.029	14.9	0.0	0.13	12.8	0.0	2.0	2	0	0	2	2	2	0	ABC	transporter
AAA_assoc_2	PF16193.5	gi|345006096|ref|YP_004808949.1|	-	0.038	14.3	1.3	0.084	13.2	0.4	2.0	2	0	0	2	2	1	0	AAA	C-terminal	domain
AAA_32	PF13654.6	gi|345006096|ref|YP_004808949.1|	-	0.041	12.7	0.9	4.4	6.0	0.4	2.3	2	0	0	2	2	2	0	AAA	domain
Ferritin	PF00210.24	gi|345006096|ref|YP_004808949.1|	-	0.045	13.7	2.6	0.06	13.3	0.2	2.3	2	1	0	2	2	2	0	Ferritin-like	domain
KAP_NTPase	PF07693.14	gi|345006096|ref|YP_004808949.1|	-	0.062	12.5	0.3	0.81	8.9	0.0	2.1	1	1	0	2	2	2	0	KAP	family	P-loop	domain
AAA_7	PF12775.7	gi|345006096|ref|YP_004808949.1|	-	0.067	12.7	0.0	0.11	12.0	0.0	1.3	1	0	0	1	1	1	0	P-loop	containing	dynein	motor	region
DNA_pol3_delta2	PF13177.6	gi|345006096|ref|YP_004808949.1|	-	0.069	12.9	0.0	0.17	11.6	0.0	1.7	2	0	0	2	2	2	0	DNA	polymerase	III,	delta	subunit
AAA_lid_10	PF17872.1	gi|345006096|ref|YP_004808949.1|	-	0.079	13.1	0.0	0.92	9.7	0.0	2.3	2	0	0	2	2	2	0	AAA	lid	domain
DUF2278	PF10042.9	gi|345006096|ref|YP_004808949.1|	-	0.087	12.8	0.3	0.31	11.0	0.0	1.9	2	1	0	2	2	2	0	Uncharacterized	conserved	protein	(DUF2278)
DEAD	PF00270.29	gi|345006096|ref|YP_004808949.1|	-	0.088	12.6	2.4	0.58	9.9	1.2	2.5	2	1	0	2	2	2	0	DEAD/DEAH	box	helicase
RNA_helicase	PF00910.22	gi|345006096|ref|YP_004808949.1|	-	0.15	12.5	0.0	0.37	11.2	0.0	1.7	1	0	0	1	1	1	0	RNA	helicase
TsaE	PF02367.17	gi|345006096|ref|YP_004808949.1|	-	0.16	12.0	0.0	0.34	10.9	0.0	1.5	1	0	0	1	1	1	0	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
MutS_III	PF05192.18	gi|345006096|ref|YP_004808949.1|	-	0.28	11.4	6.4	2.5	8.3	6.4	2.1	1	1	0	1	1	1	0	MutS	domain	III
AAA_24	PF13479.6	gi|345006096|ref|YP_004808949.1|	-	0.63	9.7	3.2	0.46	10.2	0.1	2.2	3	0	0	3	3	3	0	AAA	domain
Peptidase_S24	PF00717.23	gi|345006097|ref|YP_004808950.1|	-	0.0012	18.8	0.1	0.002	18.0	0.1	1.4	1	0	0	1	1	1	1	Peptidase	S24-like
Peptidase_S9	PF00326.21	gi|345006098|ref|YP_004808951.1|	-	4.5e-56	189.7	0.9	6.8e-56	189.1	0.9	1.3	1	0	0	1	1	1	1	Prolyl	oligopeptidase	family
PD40	PF07676.12	gi|345006098|ref|YP_004808951.1|	-	1.5e-16	59.8	8.3	4.2e-06	26.6	0.5	4.9	4	0	0	4	4	4	4	WD40-like	Beta	Propeller	Repeat
Abhydrolase_1	PF00561.20	gi|345006098|ref|YP_004808951.1|	-	3.1e-07	30.3	1.1	8.1e-05	22.4	1.4	2.3	1	1	1	2	2	2	2	alpha/beta	hydrolase	fold
DPPIV_N	PF00930.21	gi|345006098|ref|YP_004808951.1|	-	1.5e-05	23.9	1.0	0.28	9.9	0.0	4.6	2	1	2	4	4	4	1	Dipeptidyl	peptidase	IV	(DPP	IV)	N-terminal	region
AXE1	PF05448.12	gi|345006098|ref|YP_004808951.1|	-	2.5e-05	23.1	0.4	0.0063	15.2	0.0	2.1	2	0	0	2	2	2	2	Acetyl	xylan	esterase	(AXE1)
DLH	PF01738.18	gi|345006098|ref|YP_004808951.1|	-	0.00099	18.7	0.0	0.0019	17.8	0.0	1.4	1	0	0	1	1	1	1	Dienelactone	hydrolase	family
Hydrolase_4	PF12146.8	gi|345006098|ref|YP_004808951.1|	-	0.0055	16.0	3.2	0.25	10.6	0.0	2.7	3	0	0	3	3	3	2	Serine	aminopeptidase,	S33
Abhydrolase_2	PF02230.16	gi|345006098|ref|YP_004808951.1|	-	0.0086	15.9	0.0	0.017	14.9	0.0	1.4	1	0	0	1	1	1	1	Phospholipase/Carboxylesterase
Abhydrolase_4	PF08386.10	gi|345006098|ref|YP_004808951.1|	-	0.091	12.9	0.0	0.19	11.9	0.0	1.4	1	0	0	1	1	1	0	TAP-like	protein
BAAT_C	PF08840.11	gi|345006098|ref|YP_004808951.1|	-	0.15	12.0	0.0	1.2	9.0	0.0	2.0	2	0	0	2	2	2	0	BAAT	/	Acyl-CoA	thioester	hydrolase	C	terminal
Abhydrolase_6	PF12697.7	gi|345006098|ref|YP_004808951.1|	-	1.2	9.7	11.9	22	5.6	11.9	2.5	1	1	0	1	1	1	0	Alpha/beta	hydrolase	family
RHH_1	PF01402.21	gi|345006100|ref|YP_004808953.1|	-	0.0034	17.3	0.1	0.015	15.2	0.0	1.9	2	1	0	2	2	2	1	Ribbon-helix-helix	protein,	copG	family
ParE_toxin	PF05016.15	gi|345006101|ref|YP_004808954.1|	-	7.2e-05	23.3	0.2	8.5e-05	23.1	0.2	1.1	1	0	0	1	1	1	1	ParE	toxin	of	type	II	toxin-antitoxin	system,	parDE
DUF1657	PF07870.11	gi|345006101|ref|YP_004808954.1|	-	0.0066	16.3	1.0	0.015	15.2	1.0	1.6	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF1657)
zf-dskA_traR	PF01258.17	gi|345006102|ref|YP_004808955.1|	-	0.024	14.6	1.9	0.13	12.2	1.9	2.0	1	1	0	1	1	1	0	Prokaryotic	dksA/traR	C4-type	zinc	finger
DNA_pol_E_B	PF04042.16	gi|345006103|ref|YP_004808956.1|	-	6.6e-14	51.8	0.0	1.1e-13	51.1	0.0	1.2	1	0	0	1	1	1	1	DNA	polymerase	alpha/epsilon	subunit	B
Metallophos_2	PF12850.7	gi|345006103|ref|YP_004808956.1|	-	1.7e-13	51.1	1.2	4e-13	49.9	1.2	1.6	1	1	0	1	1	1	1	Calcineurin-like	phosphoesterase	superfamily	domain
Metallophos	PF00149.28	gi|345006103|ref|YP_004808956.1|	-	3.4e-11	44.0	0.1	5.6e-11	43.3	0.1	1.3	1	0	0	1	1	1	1	Calcineurin-like	phosphoesterase
tRNA_anti-codon	PF01336.25	gi|345006103|ref|YP_004808956.1|	-	0.097	12.7	0.0	0.19	11.7	0.0	1.4	1	0	0	1	1	1	0	OB-fold	nucleic	acid	binding	domain
DUF2207	PF09972.9	gi|345006104|ref|YP_004808957.1|	-	0.075	11.8	0.1	0.091	11.5	0.1	1.1	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2207)
CrgA	PF06781.12	gi|345006104|ref|YP_004808957.1|	-	1.7	8.7	5.7	0.12	12.5	0.8	1.5	2	0	0	2	2	2	0	Cell	division	protein	CrgA
UPRTase	PF14681.6	gi|345006106|ref|YP_004808959.1|	-	1.6e-47	161.7	0.0	1.9e-47	161.4	0.0	1.0	1	0	0	1	1	1	1	Uracil	phosphoribosyltransferase
Pribosyltran	PF00156.27	gi|345006106|ref|YP_004808959.1|	-	1.6e-07	31.0	0.1	2.3e-07	30.5	0.1	1.2	1	0	0	1	1	1	1	Phosphoribosyl	transferase	domain
His_biosynth	PF00977.21	gi|345006107|ref|YP_004808960.1|	-	2.3e-71	239.9	6.5	2.5e-71	239.8	6.5	1.0	1	0	0	1	1	1	1	Histidine	biosynthesis	protein
Dus	PF01207.17	gi|345006107|ref|YP_004808960.1|	-	7.8e-10	38.3	0.3	0.0009	18.4	0.1	2.1	2	0	0	2	2	2	2	Dihydrouridine	synthase	(Dus)
NMO	PF03060.15	gi|345006107|ref|YP_004808960.1|	-	2.1e-08	33.9	1.2	2.1e-08	33.9	1.2	2.1	2	0	0	2	2	2	1	Nitronate	monooxygenase
ThiG	PF05690.14	gi|345006107|ref|YP_004808960.1|	-	6.3e-08	32.2	5.1	0.0011	18.4	0.6	2.1	2	0	0	2	2	2	2	Thiazole	biosynthesis	protein	ThiG
DHO_dh	PF01180.21	gi|345006107|ref|YP_004808960.1|	-	8.3e-07	28.5	2.1	0.00026	20.3	0.1	2.1	2	0	0	2	2	2	2	Dihydroorotate	dehydrogenase
IGPS	PF00218.21	gi|345006107|ref|YP_004808960.1|	-	2.4e-05	23.6	1.1	0.018	14.2	0.0	2.6	2	1	1	3	3	3	2	Indole-3-glycerol	phosphate	synthase
TMP-TENI	PF02581.17	gi|345006107|ref|YP_004808960.1|	-	8.8e-05	21.9	3.0	0.00039	19.8	0.2	2.2	2	0	0	2	2	2	1	Thiamine	monophosphate	synthase
FMN_dh	PF01070.18	gi|345006107|ref|YP_004808960.1|	-	0.0019	17.3	10.8	0.01	14.9	3.6	2.1	2	0	0	2	2	2	2	FMN-dependent	dehydrogenase
NanE	PF04131.14	gi|345006107|ref|YP_004808960.1|	-	0.0033	16.6	1.7	0.81	8.8	0.1	2.2	2	0	0	2	2	2	2	Putative	N-acetylmannosamine-6-phosphate	epimerase
PcrB	PF01884.17	gi|345006107|ref|YP_004808960.1|	-	0.0039	16.7	8.1	0.041	13.3	0.9	2.5	2	1	1	3	3	3	2	PcrB	family
G3P_antiterm	PF04309.12	gi|345006107|ref|YP_004808960.1|	-	0.0045	16.4	1.0	0.018	14.5	0.1	2.0	2	0	0	2	2	2	1	Glycerol-3-phosphate	responsive	antiterminator
Trp_syntA	PF00290.20	gi|345006107|ref|YP_004808960.1|	-	0.0045	15.9	3.6	0.28	10.0	0.3	2.1	2	0	0	2	2	2	2	Tryptophan	synthase	alpha	chain
IMPDH	PF00478.25	gi|345006107|ref|YP_004808960.1|	-	0.016	14.3	9.1	0.042	12.8	7.0	2.0	1	1	1	2	2	2	0	IMP	dehydrogenase	/	GMP	reductase	domain
B12-binding	PF02310.19	gi|345006107|ref|YP_004808960.1|	-	0.069	13.2	8.7	1.1e+02	2.9	8.7	3.2	1	1	0	1	1	1	0	B12	binding	domain
Ribul_P_3_epim	PF00834.19	gi|345006107|ref|YP_004808960.1|	-	0.53	9.6	7.2	1.7	8.0	0.6	2.4	2	0	0	2	2	2	0	Ribulose-phosphate	3	epimerase	family
tRNA-synt_1	PF00133.22	gi|345006108|ref|YP_004808961.1|	-	1.8e-126	422.8	0.5	3.6e-125	418.6	0.2	2.3	2	1	0	2	2	2	1	tRNA	synthetases	class	I	(I,	L,	M	and	V)
Anticodon_1	PF08264.13	gi|345006108|ref|YP_004808961.1|	-	8.8e-29	100.4	0.9	4.9e-28	98.0	0.9	2.2	1	1	0	1	1	1	1	Anticodon-binding	domain	of	tRNA
tRNA-synt_1g	PF09334.11	gi|345006108|ref|YP_004808961.1|	-	4.9e-20	71.6	0.1	3.7e-12	45.7	0.0	3.5	3	1	0	3	3	3	3	tRNA	synthetases	class	I	(M)
tRNA-synt_1e	PF01406.19	gi|345006108|ref|YP_004808961.1|	-	0.00013	21.4	0.0	0.46	9.8	0.0	2.4	2	0	0	2	2	2	2	tRNA	synthetases	class	I	(C)	catalytic	domain
tRNA-synt_1_2	PF13603.6	gi|345006108|ref|YP_004808961.1|	-	0.0003	20.3	0.0	0.0012	18.5	0.0	2.0	1	1	0	1	1	1	1	Leucyl-tRNA	synthetase,	Domain	2
tRNA-synt_1f	PF01921.18	gi|345006108|ref|YP_004808961.1|	-	0.011	14.7	0.1	0.79	8.6	0.0	2.7	2	1	0	2	2	2	0	tRNA	synthetases	class	I	(K)
DZR	PF12773.7	gi|345006108|ref|YP_004808961.1|	-	0.014	15.4	0.3	1.1	9.4	0.1	2.4	2	0	0	2	2	2	0	Double	zinc	ribbon
Zn-ribbon_8	PF09723.10	gi|345006108|ref|YP_004808961.1|	-	7.8	6.7	10.3	0.88	9.7	0.7	3.0	3	0	0	3	3	3	0	Zinc	ribbon	domain
MFS_1	PF07690.16	gi|345006110|ref|YP_004808963.1|	-	2.2e-32	112.3	59.5	2.4e-20	72.8	25.7	2.2	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
MFS_2	PF13347.6	gi|345006110|ref|YP_004808963.1|	-	8.6e-07	27.9	22.8	3.5e-05	22.6	11.3	2.9	2	1	1	3	3	3	2	MFS/sugar	transport	protein
Sugar_tr	PF00083.24	gi|345006110|ref|YP_004808963.1|	-	0.0011	17.9	2.0	0.0011	17.9	2.0	3.2	2	2	1	3	3	3	1	Sugar	(and	other)	transporter
Amidohydro_1	PF01979.20	gi|345006111|ref|YP_004808964.1|	-	7.7e-67	226.0	4.8	9.1e-67	225.8	4.8	1.0	1	0	0	1	1	1	1	Amidohydrolase	family
Amidohydro_3	PF07969.11	gi|345006111|ref|YP_004808964.1|	-	7.7e-26	91.6	14.3	1.5e-20	74.1	10.8	2.4	2	1	0	2	2	2	2	Amidohydrolase	family
TatD_DNase	PF01026.21	gi|345006111|ref|YP_004808964.1|	-	0.0035	16.8	0.0	0.0059	16.0	0.0	1.3	1	0	0	1	1	1	1	TatD	related	DNase
A_deaminase	PF00962.22	gi|345006111|ref|YP_004808964.1|	-	0.004	16.5	0.0	0.0073	15.7	0.0	1.3	1	0	0	1	1	1	1	Adenosine/AMP	deaminase
TBP	PF00352.21	gi|345006113|ref|YP_004808966.1|	-	1.5e-54	181.9	0.0	3.5e-26	91.0	0.0	2.0	2	0	0	2	2	2	2	Transcription	factor	TFIID	(or	TATA-binding	protein,	TBP)
DUF3378	PF11858.8	gi|345006113|ref|YP_004808966.1|	-	0.00013	22.0	0.0	0.19	11.9	0.0	2.2	2	0	0	2	2	2	2	Domain	of	unknown	function	(DUF3378)
T4bSS_IcmS	PF12608.8	gi|345006113|ref|YP_004808966.1|	-	0.0025	18.1	0.0	0.14	12.5	0.0	2.3	2	0	0	2	2	2	1	Type	IVb	secretion,	IcmS,	effector-recruitment
DUF218	PF02698.17	gi|345006113|ref|YP_004808966.1|	-	0.06	13.4	0.0	2.2	8.3	0.0	2.1	1	1	1	2	2	2	0	DUF218	domain
UPF0020	PF01170.18	gi|345006116|ref|YP_004808969.1|	-	5.2e-23	81.8	0.7	5e-22	78.5	0.7	2.1	1	1	0	1	1	1	1	Putative	RNA	methylase	family	UPF0020
Methyltransf_25	PF13649.6	gi|345006116|ref|YP_004808969.1|	-	5.1e-05	23.9	0.2	0.00016	22.3	0.0	1.9	2	0	0	2	2	2	1	Methyltransferase	domain
THUMP	PF02926.17	gi|345006116|ref|YP_004808969.1|	-	0.0012	19.0	0.0	0.0021	18.2	0.0	1.3	1	0	0	1	1	1	1	THUMP	domain
AviRa	PF11599.8	gi|345006116|ref|YP_004808969.1|	-	0.01	15.3	0.0	2.8	7.3	0.0	2.2	1	1	1	2	2	2	0	RRNA	methyltransferase	AviRa
Methyltransf_11	PF08241.12	gi|345006116|ref|YP_004808969.1|	-	0.013	16.1	0.0	0.029	15.0	0.0	1.6	1	0	0	1	1	1	0	Methyltransferase	domain
Cons_hypoth95	PF03602.15	gi|345006116|ref|YP_004808969.1|	-	0.018	14.7	0.0	0.027	14.1	0.0	1.2	1	0	0	1	1	1	0	Conserved	hypothetical	protein	95
N6_Mtase	PF02384.16	gi|345006116|ref|YP_004808969.1|	-	0.22	10.8	0.0	0.33	10.2	0.0	1.2	1	0	0	1	1	1	0	N-6	DNA	Methylase
TetR_C_6	PF13977.6	gi|345006116|ref|YP_004808969.1|	-	1.5	9.0	13.1	0.66	10.2	4.4	2.9	2	0	0	2	2	2	0	BetI-type	transcriptional	repressor,	C-terminal
DUF1508	PF07411.12	gi|345006117|ref|YP_004808970.1|	-	4.2e-20	71.3	0.2	7.4e-20	70.6	0.2	1.4	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1508)
NO_synthase	PF02898.15	gi|345006117|ref|YP_004808970.1|	-	0.17	10.8	0.0	0.25	10.3	0.0	1.1	1	0	0	1	1	1	0	Nitric	oxide	synthase,	oxygenase	domain
PS_Dcarbxylase	PF02666.15	gi|345006118|ref|YP_004808971.1|	-	1.6e-24	86.6	0.1	2.9e-22	79.2	0.1	2.0	1	1	0	1	1	1	1	Phosphatidylserine	decarboxylase
Peptidase_M23	PF01551.22	gi|345006118|ref|YP_004808971.1|	-	0.002	18.3	1.2	8.5	6.7	0.0	3.2	2	1	1	3	3	3	2	Peptidase	family	M23
Biotin_lipoyl	PF00364.22	gi|345006118|ref|YP_004808971.1|	-	0.023	14.5	0.6	16	5.4	0.0	3.7	4	0	0	4	4	4	0	Biotin-requiring	enzyme
PTS_EIIA_1	PF00358.20	gi|345006118|ref|YP_004808971.1|	-	0.15	11.9	0.2	43	3.9	0.0	3.0	2	1	1	3	3	3	0	phosphoenolpyruvate-dependent	sugar	phosphotransferase	system,	EIIA	1
RnfC_N	PF13375.6	gi|345006118|ref|YP_004808971.1|	-	0.16	11.9	0.8	6.4	6.8	0.0	3.0	2	1	0	3	3	3	0	RnfC	Barrel	sandwich	hybrid	domain
Biotin_lipoyl_2	PF13533.6	gi|345006118|ref|YP_004808971.1|	-	0.23	11.3	1.0	0.73	9.7	0.5	2.1	2	0	0	2	2	2	0	Biotin-lipoyl	like
AAA	PF00004.29	gi|345006119|ref|YP_004808972.1|	-	1e-11	45.4	0.0	2.7e-11	44.0	0.0	1.7	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
DNA_pol3_delta2	PF13177.6	gi|345006119|ref|YP_004808972.1|	-	1.2e-10	41.4	0.0	1.8e-10	40.8	0.0	1.2	1	0	0	1	1	1	1	DNA	polymerase	III,	delta	subunit
Rep_fac_C	PF08542.11	gi|345006119|ref|YP_004808972.1|	-	5.5e-10	39.5	0.0	1.3e-09	38.3	0.0	1.7	1	0	0	1	1	1	1	Replication	factor	C	C-terminal	domain
AAA_22	PF13401.6	gi|345006119|ref|YP_004808972.1|	-	4.4e-08	33.5	0.0	1.2e-07	32.1	0.0	1.6	2	0	0	2	2	2	1	AAA	domain
AAA_16	PF13191.6	gi|345006119|ref|YP_004808972.1|	-	3.9e-07	30.6	0.5	3.2e-06	27.6	0.1	2.3	2	0	0	2	2	2	1	AAA	ATPase	domain
Sigma54_activat	PF00158.26	gi|345006119|ref|YP_004808972.1|	-	4.9e-05	23.1	0.1	0.0022	17.7	0.0	2.7	3	0	0	3	3	3	1	Sigma-54	interaction	domain
AAA_30	PF13604.6	gi|345006119|ref|YP_004808972.1|	-	0.00021	21.1	0.5	0.00093	19.0	0.0	2.2	2	1	0	2	2	2	1	AAA	domain
AAA_19	PF13245.6	gi|345006119|ref|YP_004808972.1|	-	0.00023	21.5	0.0	0.00062	20.1	0.0	1.7	1	0	0	1	1	1	1	AAA	domain
AAA_11	PF13086.6	gi|345006119|ref|YP_004808972.1|	-	0.00055	19.8	0.0	0.0012	18.7	0.0	1.5	1	1	0	1	1	1	1	AAA	domain
AAA_18	PF13238.6	gi|345006119|ref|YP_004808972.1|	-	0.0013	19.3	0.0	0.004	17.7	0.0	1.8	1	1	0	1	1	1	1	AAA	domain
AAA_14	PF13173.6	gi|345006119|ref|YP_004808972.1|	-	0.0019	18.2	0.0	0.0064	16.5	0.0	1.8	1	1	0	1	1	1	1	AAA	domain
NACHT	PF05729.12	gi|345006119|ref|YP_004808972.1|	-	0.0021	18.0	0.0	0.0063	16.4	0.0	1.7	1	1	0	1	1	1	1	NACHT	domain
AAA_24	PF13479.6	gi|345006119|ref|YP_004808972.1|	-	0.0038	17.0	0.0	0.006	16.3	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
Rad17	PF03215.15	gi|345006119|ref|YP_004808972.1|	-	0.0039	17.1	0.0	0.0067	16.4	0.0	1.3	1	0	0	1	1	1	1	Rad17	P-loop	domain
AAA_33	PF13671.6	gi|345006119|ref|YP_004808972.1|	-	0.0043	17.2	0.0	0.0086	16.2	0.0	1.5	1	0	0	1	1	1	1	AAA	domain
Zeta_toxin	PF06414.12	gi|345006119|ref|YP_004808972.1|	-	0.0052	16.1	0.2	0.02	14.2	0.0	1.9	1	1	0	2	2	2	1	Zeta	toxin
AAA_assoc_2	PF16193.5	gi|345006119|ref|YP_004808972.1|	-	0.0056	17.0	1.1	0.018	15.3	0.2	2.3	2	0	0	2	2	2	1	AAA	C-terminal	domain
IstB_IS21	PF01695.17	gi|345006119|ref|YP_004808972.1|	-	0.0077	16.0	0.0	0.02	14.6	0.0	1.7	1	0	0	1	1	1	1	IstB-like	ATP	binding	protein
T2SSE	PF00437.20	gi|345006119|ref|YP_004808972.1|	-	0.014	14.5	0.0	0.033	13.2	0.0	1.6	1	0	0	1	1	1	0	Type	II/IV	secretion	system	protein
Mg_chelatase	PF01078.21	gi|345006119|ref|YP_004808972.1|	-	0.025	14.0	0.1	0.053	12.9	0.1	1.5	1	1	0	1	1	1	0	Magnesium	chelatase,	subunit	ChlI
Viral_helicase1	PF01443.18	gi|345006119|ref|YP_004808972.1|	-	0.026	14.3	0.0	0.043	13.5	0.0	1.3	1	0	0	1	1	1	0	Viral	(Superfamily	1)	RNA	helicase
AAA_5	PF07728.14	gi|345006119|ref|YP_004808972.1|	-	0.033	14.2	1.4	0.3	11.1	0.4	2.5	2	1	0	2	2	1	0	AAA	domain	(dynein-related	subfamily)
DUF2075	PF09848.9	gi|345006119|ref|YP_004808972.1|	-	0.037	13.3	0.0	0.053	12.8	0.0	1.3	1	0	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2075)
NTPase_1	PF03266.15	gi|345006119|ref|YP_004808972.1|	-	0.041	13.8	0.0	11	5.9	0.0	2.3	2	0	0	2	2	2	0	NTPase
Sigma54_activ_2	PF14532.6	gi|345006119|ref|YP_004808972.1|	-	0.044	13.9	0.0	0.14	12.3	0.0	1.7	2	0	0	2	2	2	0	Sigma-54	interaction	domain
AAA_28	PF13521.6	gi|345006119|ref|YP_004808972.1|	-	0.054	13.7	0.1	0.19	11.9	0.1	2.2	1	1	0	1	1	1	0	AAA	domain
cobW	PF02492.19	gi|345006119|ref|YP_004808972.1|	-	0.065	12.8	0.0	0.43	10.1	0.0	2.2	2	1	0	2	2	2	0	CobW/HypB/UreG,	nucleotide-binding	domain
DNA_pol3_delta	PF06144.13	gi|345006119|ref|YP_004808972.1|	-	0.073	12.8	0.0	0.13	12.0	0.0	1.3	1	0	0	1	1	1	0	DNA	polymerase	III,	delta	subunit
HEAT_2	PF13646.6	gi|345006119|ref|YP_004808972.1|	-	0.077	13.4	2.7	0.81	10.1	0.2	3.2	3	0	0	3	3	2	0	HEAT	repeats
ABC_tran	PF00005.27	gi|345006119|ref|YP_004808972.1|	-	0.079	13.5	0.0	0.13	12.7	0.0	1.7	1	1	0	1	1	1	0	ABC	transporter
FtsK_SpoIIIE	PF01580.18	gi|345006119|ref|YP_004808972.1|	-	0.082	12.3	0.0	0.46	9.8	0.0	2.1	2	0	0	2	2	2	0	FtsK/SpoIIIE	family
DNA_pol3_gamma3	PF12169.8	gi|345006119|ref|YP_004808972.1|	-	0.085	12.8	0.4	0.25	11.3	0.2	1.9	2	0	0	2	2	2	0	DNA	polymerase	III	subunits	gamma	and	tau	domain	III
TsaE	PF02367.17	gi|345006119|ref|YP_004808972.1|	-	0.14	12.2	0.0	0.27	11.2	0.0	1.4	1	0	0	1	1	1	0	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
PAS_4	PF08448.10	gi|345006119|ref|YP_004808972.1|	-	0.71	10.1	6.9	2.6	8.3	0.2	3.7	2	2	2	5	5	5	0	PAS	fold
TetR_C_6	PF13977.6	gi|345006119|ref|YP_004808972.1|	-	4.1	7.7	11.2	0.36	11.1	0.4	3.4	3	2	0	3	3	3	0	BetI-type	transcriptional	repressor,	C-terminal
DUF4382	PF14321.6	gi|345006120|ref|YP_004808973.1|	-	4.2e-53	179.3	22.8	5e-28	98.1	1.7	3.2	3	0	0	3	3	3	2	Domain	of	unknown	function	(DUF4382)
S1_2	PF13509.6	gi|345006120|ref|YP_004808973.1|	-	0.03	14.4	0.2	1.7	8.7	0.0	2.8	2	0	0	2	2	2	0	S1	domain
DUF4198	PF10670.9	gi|345006120|ref|YP_004808973.1|	-	0.031	14.6	2.3	0.031	14.6	2.3	3.4	2	1	2	4	4	4	0	Domain	of	unknown	function	(DUF4198)
IPU_b_solenoid	PF18783.1	gi|345006120|ref|YP_004808973.1|	-	0.14	12.2	3.8	1.6	8.9	0.1	3.0	3	0	0	3	3	3	0	Isopullulanase	beta-solenoid	repeat
FAM183	PF14886.6	gi|345006120|ref|YP_004808973.1|	-	0.22	12.3	1.3	7.3	7.4	0.0	2.9	3	0	0	3	3	3	0	FAM183A	and	FAM183B	related
DUF900	PF05990.12	gi|345006120|ref|YP_004808973.1|	-	0.49	9.9	3.2	0.35	10.4	1.1	1.7	2	0	0	2	2	2	0	Alpha/beta	hydrolase	of	unknown	function	(DUF900)
DUF4232	PF14016.6	gi|345006120|ref|YP_004808973.1|	-	7.1	6.8	15.4	0.23	11.6	6.3	3.1	2	1	2	4	4	4	0	Protein	of	unknown	function	(DUF4232)
SURF2	PF05477.11	gi|345006120|ref|YP_004808973.1|	-	9.1	5.9	7.0	4.1	7.0	0.4	2.2	2	0	0	2	2	2	0	Surfeit	locus	protein	2	(SURF2)
Lactamase_B_2	PF12706.7	gi|345006121|ref|YP_004808974.1|	-	4.1e-22	78.7	0.7	2.3e-10	40.4	0.1	2.1	2	0	0	2	2	2	2	Beta-lactamase	superfamily	domain
Lactamase_B	PF00753.27	gi|345006121|ref|YP_004808974.1|	-	2e-15	57.3	3.8	4.1e-14	53.0	3.8	2.2	1	1	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Lactamase_B_4	PF13691.6	gi|345006121|ref|YP_004808974.1|	-	0.00011	21.8	0.0	0.00022	20.8	0.0	1.4	1	0	0	1	1	1	1	tRNase	Z	endonuclease
DUF460	PF04312.13	gi|345006122|ref|YP_004808975.1|	-	8.8e-45	151.9	0.0	1.7e-44	150.9	0.0	1.5	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF460)
Exonuc_VII_L	PF02601.15	gi|345006122|ref|YP_004808975.1|	-	0.0095	15.5	4.8	0.0095	15.5	3.7	1.6	2	0	0	2	2	2	1	Exonuclease	VII,	large	subunit
V_ATPase_I	PF01496.19	gi|345006122|ref|YP_004808975.1|	-	0.043	11.8	7.5	0.067	11.1	7.5	1.2	1	0	0	1	1	1	0	V-type	ATPase	116kDa	subunit	family
FAM76	PF16046.5	gi|345006122|ref|YP_004808975.1|	-	0.082	12.2	10.6	0.14	11.5	10.6	1.3	1	0	0	1	1	1	0	FAM76	protein
GAS	PF13851.6	gi|345006122|ref|YP_004808975.1|	-	0.2	11.0	23.3	0.46	9.8	23.3	1.6	1	0	0	1	1	1	0	Growth-arrest	specific	micro-tubule	binding
DUF4407	PF14362.6	gi|345006122|ref|YP_004808975.1|	-	0.88	8.9	14.3	2	7.7	14.3	1.5	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4407)
HMMR_N	PF15905.5	gi|345006122|ref|YP_004808975.1|	-	0.93	8.9	21.1	1.6	8.2	21.1	1.2	1	0	0	1	1	1	0	Hyaluronan	mediated	motility	receptor	N-terminal
FlxA	PF14282.6	gi|345006122|ref|YP_004808975.1|	-	1	9.4	11.0	1.4	8.9	9.1	2.1	1	1	1	2	2	2	0	FlxA-like	protein
Laminin_II	PF06009.12	gi|345006122|ref|YP_004808975.1|	-	1.1	9.2	7.1	3	7.8	7.1	1.8	1	0	0	1	1	1	0	Laminin	Domain	II
YPEB	PF14620.6	gi|345006122|ref|YP_004808975.1|	-	1.2	8.4	7.1	2	7.7	7.1	1.3	1	0	0	1	1	1	0	YpeB	sporulation
DUF724	PF05266.14	gi|345006122|ref|YP_004808975.1|	-	1.4	8.7	16.1	5.1	6.9	16.0	2.1	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF724)
Herpes_UL6	PF01763.16	gi|345006122|ref|YP_004808975.1|	-	1.8	7.0	5.9	2.8	6.4	5.9	1.2	1	0	0	1	1	1	0	Herpesvirus	UL6	like
UPF0242	PF06785.11	gi|345006122|ref|YP_004808975.1|	-	2.9	8.0	21.5	6	6.9	21.5	1.4	1	0	0	1	1	1	0	Uncharacterised	protein	family	(UPF0242)	N-terminus
Atg14	PF10186.9	gi|345006122|ref|YP_004808975.1|	-	3.1	6.8	12.7	6.4	5.8	12.7	1.5	1	0	0	1	1	1	0	Vacuolar	sorting	38	and	autophagy-related	subunit	14
Spc7	PF08317.11	gi|345006122|ref|YP_004808975.1|	-	3.5	6.4	19.1	6.5	5.5	19.1	1.4	1	0	0	1	1	1	0	Spc7	kinetochore	protein
ERM	PF00769.19	gi|345006122|ref|YP_004808975.1|	-	4.6	7.0	35.2	0.34	10.7	26.0	2.7	2	0	0	2	2	2	0	Ezrin/radixin/moesin	family
AAA_11	PF13086.6	gi|345006122|ref|YP_004808975.1|	-	5.4	6.7	9.7	12	5.5	9.7	1.6	1	0	0	1	1	1	0	AAA	domain
BLOC1_2	PF10046.9	gi|345006122|ref|YP_004808975.1|	-	5.4	7.4	10.5	3.5	8.0	3.8	2.5	1	1	1	2	2	2	0	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
TMPIT	PF07851.13	gi|345006122|ref|YP_004808975.1|	-	8.4	5.5	12.2	1.2	8.4	5.1	2.1	1	1	1	2	2	2	0	TMPIT-like	protein
OrfB_IS605	PF01385.19	gi|345006124|ref|YP_004808977.1|	-	5.6e-30	104.0	0.1	9.4e-30	103.3	0.1	1.3	1	0	0	1	1	1	1	Probable	transposase
OrfB_Zn_ribbon	PF07282.11	gi|345006124|ref|YP_004808977.1|	-	2.6e-17	62.5	0.2	5e-17	61.6	0.2	1.5	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
DUF2892	PF11127.8	gi|345006127|ref|YP_004808980.1|	-	0.048	13.7	0.5	0.048	13.7	0.5	3.2	4	1	0	4	4	4	0	Protein	of	unknown	function	(DUF2892)
HGTP_anticodon	PF03129.20	gi|345006128|ref|YP_004808981.1|	-	5.2e-19	68.2	0.0	9.6e-19	67.3	0.0	1.5	1	0	0	1	1	1	1	Anticodon	binding	domain
tRNA-synt_2b	PF00587.25	gi|345006128|ref|YP_004808981.1|	-	1.1e-11	45.1	0.0	2e-09	37.7	0.0	2.7	2	1	0	2	2	2	1	tRNA	synthetase	class	II	core	domain	(G,	H,	P,	S	and	T)
DUF3969	PF13108.6	gi|345006128|ref|YP_004808981.1|	-	0.057	13.4	0.0	0.11	12.5	0.0	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3969)
Nif11	PF07862.11	gi|345006128|ref|YP_004808981.1|	-	0.073	13.4	2.2	5.8	7.3	0.1	3.1	3	0	0	3	3	3	0	Nif11	domain
DUF348	PF03990.14	gi|345006128|ref|YP_004808981.1|	-	6.3	6.6	6.8	22	4.9	1.8	3.8	4	0	0	4	4	4	0	G5-linked-Ubiquitin-like	domain
CBS	PF00571.28	gi|345006129|ref|YP_004808982.1|	-	1.3e-30	105.6	9.0	6.2e-13	49.0	0.5	4.2	4	0	0	4	4	4	4	CBS	domain
Peptidase_S8	PF00082.22	gi|345006130|ref|YP_004808983.1|	-	4.8e-16	58.9	5.9	1e-13	51.2	0.1	2.5	2	1	0	2	2	2	2	Subtilase	family
DUF296	PF03479.15	gi|345006132|ref|YP_004808985.1|	-	3.1e-18	66.1	0.0	3.4e-18	66.0	0.0	1.0	1	0	0	1	1	1	1	Plants	and	Prokaryotes	Conserved	(PCC)	domain
PolC_DP2	PF03833.13	gi|345006133|ref|YP_004808986.1|	-	0	1298.1	0.0	0	1297.0	0.0	1.6	2	1	0	2	2	2	1	DNA	polymerase	II	large	subunit	DP2
Intein_splicing	PF14890.6	gi|345006133|ref|YP_004808986.1|	-	1.6e-08	34.6	0.0	3.2e-08	33.6	0.0	1.4	1	0	0	1	1	1	1	Intein	splicing	domain
TackOD1	PF18551.1	gi|345006133|ref|YP_004808986.1|	-	0.012	15.4	5.0	0.019	14.7	1.6	2.2	2	0	0	2	2	2	0	Thaumarchaeal	output	domain	1
Nop10p	PF04135.12	gi|345006133|ref|YP_004808986.1|	-	0.095	12.8	1.8	0.36	10.9	1.8	2.0	1	0	0	1	1	1	0	Nucleolar	RNA-binding	protein,	Nop10p	family
DZR	PF12773.7	gi|345006133|ref|YP_004808986.1|	-	0.42	10.7	15.8	5.1	7.2	9.7	2.8	2	1	0	2	2	2	0	Double	zinc	ribbon
HypA	PF01155.19	gi|345006133|ref|YP_004808986.1|	-	0.61	10.1	16.3	3.8	7.6	0.3	3.5	2	1	1	3	3	3	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
TerY_C	PF15616.6	gi|345006133|ref|YP_004808986.1|	-	2	8.5	4.8	4.7	7.3	4.8	1.6	1	0	0	1	1	1	0	TerY-C	metal	binding	domain
zinc-ribbons_6	PF07191.12	gi|345006133|ref|YP_004808986.1|	-	9.8	6.3	15.4	22	5.1	0.1	2.9	2	1	0	2	2	2	0	zinc-ribbons
HypA	PF01155.19	gi|345006134|ref|YP_004808987.1|	-	0.0017	18.3	0.2	0.0025	17.8	0.2	1.3	1	0	0	1	1	1	1	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
PRC	PF05239.16	gi|345006134|ref|YP_004808987.1|	-	0.0054	16.8	1.4	0.0093	16.0	0.3	1.9	2	0	0	2	2	2	1	PRC-barrel	domain
Rubredoxin_2	PF18073.1	gi|345006134|ref|YP_004808987.1|	-	0.0089	15.7	1.6	0.49	10.2	0.1	2.2	2	0	0	2	2	2	1	Rubredoxin	metal	binding	domain
Zn-ribbon_8	PF09723.10	gi|345006134|ref|YP_004808987.1|	-	0.011	15.8	1.1	0.023	14.8	1.1	1.5	1	0	0	1	1	1	0	Zinc	ribbon	domain
BPL_C	PF02237.17	gi|345006134|ref|YP_004808987.1|	-	0.044	13.7	0.5	0.081	12.8	0.5	1.6	1	0	0	1	1	1	0	Biotin	protein	ligase	C	terminal	domain
HalOD2	PF18547.1	gi|345006134|ref|YP_004808987.1|	-	0.048	13.6	4.8	1.2	9.0	0.1	3.0	3	0	0	3	3	3	0	Halobacterial	output	domain	2
Rubredoxin	PF00301.20	gi|345006134|ref|YP_004808987.1|	-	0.092	12.8	5.8	0.23	11.5	0.8	2.8	2	1	1	3	3	3	0	Rubredoxin
zf-ribbon_3	PF13248.6	gi|345006134|ref|YP_004808987.1|	-	0.098	12.1	2.1	0.71	9.4	0.2	2.3	2	0	0	2	2	2	0	zinc-ribbon	domain
NRDD	PF13597.6	gi|345006134|ref|YP_004808987.1|	-	0.39	9.4	0.9	0.45	9.2	0.9	1.1	1	0	0	1	1	1	0	Anaerobic	ribonucleoside-triphosphate	reductase
OrfB_Zn_ribbon	PF07282.11	gi|345006135|ref|YP_004808988.1|	-	1.1e-21	76.5	0.3	2.4e-21	75.4	0.3	1.6	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
OrfB_IS605	PF01385.19	gi|345006135|ref|YP_004808988.1|	-	4.3e-20	72.1	0.3	1e-19	70.9	0.3	1.5	1	0	0	1	1	1	1	Probable	transposase
HTH_OrfB_IS605	PF12323.8	gi|345006135|ref|YP_004808988.1|	-	0.00015	21.2	0.1	0.00042	19.8	0.1	1.7	1	0	0	1	1	1	1	Helix-turn-helix	domain
DUF3445	PF11927.8	gi|345006135|ref|YP_004808988.1|	-	0.062	12.9	0.2	0.11	12.1	0.2	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3445)
DUF1451	PF07295.11	gi|345006135|ref|YP_004808988.1|	-	0.15	12.1	1.9	0.31	11.1	1.9	1.6	1	0	0	1	1	1	0	Zinc-ribbon	containing	domain
Sulfatase	PF00884.23	gi|345006136|ref|YP_004808989.1|	-	5.6e-46	157.4	0.2	7.7e-46	156.9	0.2	1.2	1	0	0	1	1	1	1	Sulfatase
Phosphodiest	PF01663.22	gi|345006136|ref|YP_004808989.1|	-	1.4e-10	41.3	4.2	8.2e-09	35.5	1.6	2.8	2	1	0	2	2	2	1	Type	I	phosphodiesterase	/	nucleotide	pyrophosphatase
DUF4247	PF14042.6	gi|345006136|ref|YP_004808989.1|	-	0.062	14.0	0.0	0.12	13.0	0.0	1.5	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4247)
DUF1501	PF07394.12	gi|345006136|ref|YP_004808989.1|	-	0.22	10.5	2.1	1.2	8.1	0.1	2.3	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1501)
NOB1_Zn_bind	PF08772.11	gi|345006137|ref|YP_004808990.1|	-	0.0038	17.3	1.4	0.031	14.4	0.1	2.0	1	1	1	2	2	2	1	Nin	one	binding	(NOB1)	Zn-ribbon	like
Rpr2	PF04032.16	gi|345006137|ref|YP_004808990.1|	-	0.019	15.3	0.5	0.023	15.0	0.5	1.1	1	0	0	1	1	1	0	RNAse	P	Rpr2/Rpp21/SNM1	subunit	domain
Cytochrome_C7	PF14522.6	gi|345006137|ref|YP_004808990.1|	-	0.026	14.5	0.6	0.027	14.5	0.6	1.1	1	0	0	1	1	1	0	Cytochrome	c7	and	related	cytochrome	c
zf-IS66	PF13005.7	gi|345006137|ref|YP_004808990.1|	-	0.28	11.6	4.5	1.8	9.0	4.7	2.0	1	1	1	2	2	2	0	zinc-finger	binding	domain	of	transposase	IS66
Peptidase_M24	PF00557.24	gi|345006138|ref|YP_004808991.1|	-	8e-39	133.5	0.7	8.8e-39	133.4	0.7	1.1	1	0	0	1	1	1	1	Metallopeptidase	family	M24
DUF3323	PF11796.8	gi|345006138|ref|YP_004808991.1|	-	0.015	15.2	0.5	0.023	14.6	0.0	1.5	2	0	0	2	2	2	0	Protein	of	unknown	function	N-terminus	(DUF3323)
ECF-ribofla_trS	PF07155.12	gi|345006138|ref|YP_004808991.1|	-	0.17	11.9	0.0	0.26	11.3	0.0	1.2	1	0	0	1	1	1	0	ECF-type	riboflavin	transporter,	S	component
Usp	PF00582.26	gi|345006139|ref|YP_004808992.1|	-	2.2e-30	106.0	2.5	2.5e-30	105.8	2.5	1.0	1	0	0	1	1	1	1	Universal	stress	protein	family
DDE_Tnp_IS240	PF13610.6	gi|345006140|ref|YP_004808993.1|	-	1.2e-15	57.9	0.2	1.7e-15	57.5	0.2	1.2	1	0	0	1	1	1	1	DDE	domain
DDE_Tnp_IS66	PF03050.14	gi|345006140|ref|YP_004808993.1|	-	0.00031	20.3	1.5	0.00054	19.5	0.0	2.0	2	1	0	2	2	2	1	Transposase	IS66	family
eIF-1a	PF01176.19	gi|345006141|ref|YP_004808994.1|	-	0.064	13.1	0.1	0.15	11.9	0.0	1.8	2	1	0	2	2	2	0	Translation	initiation	factor	1A	/	IF-1
AdoHcyase	PF05221.17	gi|345006142|ref|YP_004808995.1|	-	6.6e-48	163.4	0.0	5.9e-24	84.7	0.0	2.0	1	1	1	2	2	2	2	S-adenosyl-L-homocysteine	hydrolase
AdoHcyase_NAD	PF00670.21	gi|345006142|ref|YP_004808995.1|	-	1.2e-46	158.8	0.9	1.8e-46	158.2	0.2	1.6	2	0	0	2	2	2	1	S-adenosyl-L-homocysteine	hydrolase,	NAD	binding	domain
2-Hacid_dh_C	PF02826.19	gi|345006142|ref|YP_004808995.1|	-	7.5e-09	35.2	0.1	1.4e-08	34.3	0.1	1.3	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
IlvN	PF07991.12	gi|345006142|ref|YP_004808995.1|	-	1.5e-05	24.6	0.3	6.3e-05	22.6	0.1	2.1	2	0	0	2	2	2	1	Acetohydroxy	acid	isomeroreductase,	NADPH-binding	domain
TrkA_N	PF02254.18	gi|345006142|ref|YP_004808995.1|	-	0.012	15.9	0.1	0.046	14.0	0.1	2.1	2	0	0	2	2	2	0	TrkA-N	domain
3HCDH_N	PF02737.18	gi|345006142|ref|YP_004808995.1|	-	0.11	12.4	0.3	0.23	11.3	0.3	1.5	1	0	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
Hjc	PF01870.18	gi|345006144|ref|YP_004808997.1|	-	2.2e-31	107.7	0.0	3.1e-31	107.2	0.0	1.2	1	0	0	1	1	1	1	Archaeal	holliday	junction	resolvase	(hjc)
DUF1707	PF08044.11	gi|345006144|ref|YP_004808997.1|	-	0.032	14.3	2.7	0.04	14.0	1.0	2.1	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF1707)
DUF1616	PF07760.11	gi|345006145|ref|YP_004808998.1|	-	0.29	10.5	1.1	0.31	10.4	1.1	1.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1616)
DNA_primase_lrg	PF04104.14	gi|345006146|ref|YP_004808999.1|	-	2.1e-09	37.2	0.0	2.6e-09	36.9	0.0	1.1	1	0	0	1	1	1	1	Eukaryotic	and	archaeal	DNA	primase,	large	subunit
Rep_fac_C	PF08542.11	gi|345006147|ref|YP_004809000.1|	-	3e-22	78.8	0.0	7.4e-22	77.6	0.0	1.7	2	0	0	2	2	1	1	Replication	factor	C	C-terminal	domain
DNA_pol3_delta2	PF13177.6	gi|345006147|ref|YP_004809000.1|	-	3.8e-18	65.8	0.0	1.8e-12	47.3	0.0	2.2	1	1	1	2	2	2	2	DNA	polymerase	III,	delta	subunit
AAA	PF00004.29	gi|345006147|ref|YP_004809000.1|	-	6.9e-18	65.4	0.0	6.5e-17	62.2	0.0	2.1	2	0	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_16	PF13191.6	gi|345006147|ref|YP_004809000.1|	-	5e-09	36.8	2.3	1e-05	26.0	0.0	3.0	2	1	1	3	3	3	2	AAA	ATPase	domain
RuvB_N	PF05496.12	gi|345006147|ref|YP_004809000.1|	-	1.1e-07	31.7	0.3	1.6e-06	28.0	0.0	2.5	2	1	0	2	2	2	1	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
Mg_chelatase	PF01078.21	gi|345006147|ref|YP_004809000.1|	-	2.6e-05	23.7	0.0	0.0038	16.6	0.0	2.4	2	0	0	2	2	2	1	Magnesium	chelatase,	subunit	ChlI
Rad17	PF03215.15	gi|345006147|ref|YP_004809000.1|	-	2.7e-05	24.2	0.0	4.8e-05	23.4	0.0	1.4	1	0	0	1	1	1	1	Rad17	P-loop	domain
AAA_assoc_2	PF16193.5	gi|345006147|ref|YP_004809000.1|	-	5.6e-05	23.4	0.9	0.00033	20.9	0.3	2.5	1	1	1	2	2	2	1	AAA	C-terminal	domain
DNA_pol3_delta	PF06144.13	gi|345006147|ref|YP_004809000.1|	-	9.3e-05	22.3	0.0	0.00015	21.6	0.0	1.3	1	0	0	1	1	1	1	DNA	polymerase	III,	delta	subunit
AAA_14	PF13173.6	gi|345006147|ref|YP_004809000.1|	-	0.00027	21.0	0.0	0.00045	20.3	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
AAA_24	PF13479.6	gi|345006147|ref|YP_004809000.1|	-	0.0022	17.8	0.0	0.0046	16.7	0.0	1.5	1	0	0	1	1	1	1	AAA	domain
AAA_22	PF13401.6	gi|345006147|ref|YP_004809000.1|	-	0.0023	18.2	0.2	1.9	8.8	0.0	2.4	1	1	0	2	2	2	2	AAA	domain
AAA_3	PF07726.11	gi|345006147|ref|YP_004809000.1|	-	0.0024	17.7	0.0	0.024	14.5	0.0	2.1	2	0	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_25	PF13481.6	gi|345006147|ref|YP_004809000.1|	-	0.014	15.0	0.0	0.053	13.1	0.0	1.9	1	1	1	2	2	2	0	AAA	domain
ResIII	PF04851.15	gi|345006147|ref|YP_004809000.1|	-	0.014	15.4	0.0	0.16	11.9	0.0	2.1	1	1	1	2	2	2	0	Type	III	restriction	enzyme,	res	subunit
Sigma54_activat	PF00158.26	gi|345006147|ref|YP_004809000.1|	-	0.017	14.9	0.0	0.35	10.5	0.0	2.2	1	1	0	1	1	1	0	Sigma-54	interaction	domain
IstB_IS21	PF01695.17	gi|345006147|ref|YP_004809000.1|	-	0.018	14.7	0.0	0.034	13.9	0.0	1.4	1	0	0	1	1	1	0	IstB-like	ATP	binding	protein
AAA_5	PF07728.14	gi|345006147|ref|YP_004809000.1|	-	0.027	14.5	0.0	0.14	12.2	0.0	2.2	1	1	0	1	1	1	0	AAA	domain	(dynein-related	subfamily)
DUF815	PF05673.13	gi|345006147|ref|YP_004809000.1|	-	0.043	13.0	0.0	0.064	12.4	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF815)
DEAD	PF00270.29	gi|345006147|ref|YP_004809000.1|	-	0.052	13.3	0.3	4.3	7.1	0.0	2.8	2	1	0	3	3	3	0	DEAD/DEAH	box	helicase
SNF2_N	PF00176.23	gi|345006147|ref|YP_004809000.1|	-	0.12	11.1	0.0	0.17	10.6	0.0	1.2	1	0	0	1	1	1	0	SNF2	family	N-terminal	domain
AAA_7	PF12775.7	gi|345006147|ref|YP_004809000.1|	-	0.17	11.4	0.0	0.27	10.7	0.0	1.3	1	0	0	1	1	1	0	P-loop	containing	dynein	motor	region
ThiS	PF02597.20	gi|345006148|ref|YP_004809001.1|	-	8.7e-06	26.3	0.2	1e-05	26.1	0.2	1.0	1	0	0	1	1	1	1	ThiS	family
Glyco_trans_4_4	PF13579.6	gi|345006148|ref|YP_004809001.1|	-	0.068	13.6	0.7	0.078	13.4	0.7	1.1	1	0	0	1	1	1	0	Glycosyl	transferase	4-like	domain
AhpC-TSA	PF00578.21	gi|345006149|ref|YP_004809002.1|	-	2.1e-13	50.3	0.0	3.5e-13	49.6	0.0	1.3	1	0	0	1	1	1	1	AhpC/TSA	family
Acetyltransf_7	PF13508.7	gi|345006149|ref|YP_004809002.1|	-	6e-07	29.8	0.1	1.1e-06	28.9	0.1	1.4	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_10	PF13673.7	gi|345006149|ref|YP_004809002.1|	-	1.4e-06	28.3	0.0	2.2e-06	27.6	0.0	1.3	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Redoxin	PF08534.10	gi|345006149|ref|YP_004809002.1|	-	0.0001	22.1	0.0	0.00019	21.2	0.0	1.4	1	0	0	1	1	1	1	Redoxin
Acetyltransf_1	PF00583.25	gi|345006149|ref|YP_004809002.1|	-	0.00046	20.4	0.1	0.0012	19.0	0.0	1.7	2	0	0	2	2	2	1	Acetyltransferase	(GNAT)	family
Phage_Coat_B	PF05356.11	gi|345006149|ref|YP_004809002.1|	-	0.0052	16.7	0.2	0.0099	15.8	0.2	1.4	1	0	0	1	1	1	1	Phage	Coat	protein	B
FR47	PF08445.10	gi|345006149|ref|YP_004809002.1|	-	0.098	12.6	0.1	0.18	11.8	0.1	1.3	1	0	0	1	1	1	0	FR47-like	protein
Acetyltransf_1	PF00583.25	gi|345006150|ref|YP_004809003.1|	-	5.3e-07	29.9	0.0	6.8e-07	29.5	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_7	PF13508.7	gi|345006150|ref|YP_004809003.1|	-	2e-05	24.9	0.0	3e-05	24.4	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_10	PF13673.7	gi|345006150|ref|YP_004809003.1|	-	8e-05	22.6	0.0	0.00011	22.2	0.0	1.1	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_3	PF13302.7	gi|345006150|ref|YP_004809003.1|	-	0.01	16.5	0.0	0.012	16.3	0.0	1.2	1	0	0	1	1	1	0	Acetyltransferase	(GNAT)	domain
FR47	PF08445.10	gi|345006150|ref|YP_004809003.1|	-	0.032	14.2	0.0	0.044	13.7	0.0	1.2	1	0	0	1	1	1	0	FR47-like	protein
PGM_PMM_I	PF02878.16	gi|345006151|ref|YP_004809004.1|	-	8.3e-37	126.0	0.0	1.6e-36	125.0	0.0	1.5	1	0	0	1	1	1	1	Phosphoglucomutase/phosphomannomutase,	alpha/beta/alpha	domain	I
PGM_PMM_II	PF02879.16	gi|345006151|ref|YP_004809004.1|	-	1.4e-26	93.1	0.1	4e-26	91.6	0.1	1.8	1	0	0	1	1	1	1	Phosphoglucomutase/phosphomannomutase,	alpha/beta/alpha	domain	II
PGM_PMM_III	PF02880.16	gi|345006151|ref|YP_004809004.1|	-	4.6e-23	81.6	0.3	8e-23	80.8	0.3	1.4	1	0	0	1	1	1	1	Phosphoglucomutase/phosphomannomutase,	alpha/beta/alpha	domain	III
PGM_PMM_IV	PF00408.20	gi|345006151|ref|YP_004809004.1|	-	3e-15	56.2	0.2	1.2e-14	54.2	0.0	2.2	2	1	0	2	2	2	1	Phosphoglucomutase/phosphomannomutase,	C-terminal	domain
FMN_red	PF03358.15	gi|345006152|ref|YP_004809005.1|	-	9.1e-28	97.0	0.0	1.1e-27	96.7	0.0	1.1	1	0	0	1	1	1	1	NADPH-dependent	FMN	reductase
Flavodoxin_2	PF02525.17	gi|345006152|ref|YP_004809005.1|	-	1.3e-07	31.6	0.0	1.8e-07	31.1	0.0	1.3	1	0	0	1	1	1	1	Flavodoxin-like	fold
GIY-YIG	PF01541.24	gi|345006153|ref|YP_004809006.1|	-	8e-18	64.5	0.0	1.2e-17	63.9	0.0	1.3	1	0	0	1	1	1	1	GIY-YIG	catalytic	domain
T5orf172	PF10544.9	gi|345006153|ref|YP_004809006.1|	-	0.019	15.5	0.1	0.027	15.0	0.1	1.3	1	0	0	1	1	1	0	T5orf172	domain
MUG113	PF13455.6	gi|345006153|ref|YP_004809006.1|	-	0.047	14.4	0.1	0.094	13.4	0.1	1.5	1	0	0	1	1	1	0	Meiotically	up-regulated	gene	113
zf-ribbon_3	PF13248.6	gi|345006154|ref|YP_004809007.1|	-	0.0055	16.1	2.9	0.3	10.5	0.1	2.2	2	0	0	2	2	2	2	zinc-ribbon	domain
Zn-ribbon_8	PF09723.10	gi|345006154|ref|YP_004809007.1|	-	0.0073	16.4	2.7	0.016	15.4	2.7	1.5	1	1	0	1	1	1	1	Zinc	ribbon	domain
DZR	PF12773.7	gi|345006154|ref|YP_004809007.1|	-	0.012	15.6	0.4	0.017	15.2	0.4	1.3	1	0	0	1	1	1	0	Double	zinc	ribbon
DUF3268	PF11672.8	gi|345006154|ref|YP_004809007.1|	-	0.04	14.2	0.1	0.043	14.2	0.1	1.1	1	0	0	1	1	1	0	zinc-finger-containing	domain
Lar_restr_allev	PF14354.6	gi|345006154|ref|YP_004809007.1|	-	0.044	14.2	1.0	0.062	13.7	1.0	1.3	1	1	0	1	1	1	0	Restriction	alleviation	protein	Lar
zf-RING_7	PF02591.15	gi|345006154|ref|YP_004809007.1|	-	0.056	13.6	1.5	5.5	7.3	0.3	2.2	2	0	0	2	2	2	0	C4-type	zinc	ribbon	domain
ATPase-cat_bd	PF12156.8	gi|345006154|ref|YP_004809007.1|	-	0.062	14.0	0.4	0.067	13.9	0.4	1.2	1	0	0	1	1	1	0	Putative	metal-binding	domain	of	cation	transport	ATPase
UPF0167	PF03691.14	gi|345006154|ref|YP_004809007.1|	-	0.12	12.2	0.2	0.12	12.2	0.2	1.0	1	0	0	1	1	1	0	Uncharacterised	protein	family	(UPF0167)
OrfB_Zn_ribbon	PF07282.11	gi|345006154|ref|YP_004809007.1|	-	0.13	12.2	2.2	0.18	11.7	2.2	1.3	1	1	0	1	1	1	0	Putative	transposase	DNA-binding	domain
zf-C4_Topoisom	PF01396.19	gi|345006154|ref|YP_004809007.1|	-	0.18	11.6	1.3	4.9	7.0	0.0	2.1	2	0	0	2	2	2	0	Topoisomerase	DNA	binding	C4	zinc	finger
PhnA_Zn_Ribbon	PF08274.12	gi|345006154|ref|YP_004809007.1|	-	0.22	11.5	4.4	2.6	8.1	4.5	2.0	1	1	0	1	1	1	0	PhnA	Zinc-Ribbon
Prim_Zn_Ribbon	PF08273.12	gi|345006154|ref|YP_004809007.1|	-	1.6	9.1	9.7	33	4.9	7.1	2.9	2	1	0	2	2	2	0	Zinc-binding	domain	of	primase-helicase
DUF1931	PF09123.11	gi|345006155|ref|YP_004809008.1|	-	2.5e-05	24.4	1.2	2.7e-05	24.3	1.2	1.0	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1931)
CBFD_NFYB_HMF	PF00808.23	gi|345006155|ref|YP_004809008.1|	-	0.00025	21.2	0.1	0.00032	20.9	0.1	1.3	1	1	0	1	1	1	1	Histone-like	transcription	factor	(CBF/NF-Y)	and	archaeal	histone
Histone	PF00125.24	gi|345006155|ref|YP_004809008.1|	-	0.008	16.5	0.1	0.008	16.5	0.1	1.1	1	0	0	1	1	1	1	Core	histone	H2A/H2B/H3/H4
DctP	PF03480.13	gi|345006155|ref|YP_004809008.1|	-	0.05	12.9	0.1	0.059	12.7	0.1	1.1	1	0	0	1	1	1	0	Bacterial	extracellular	solute-binding	protein,	family	7
Rib_5-P_isom_A	PF06026.14	gi|345006156|ref|YP_004809009.1|	-	5.9e-61	205.1	0.0	7e-61	204.8	0.0	1.1	1	0	0	1	1	1	1	Ribose	5-phosphate	isomerase	A	(phosphoriboisomerase	A)
DeoRC	PF00455.22	gi|345006156|ref|YP_004809009.1|	-	5.1e-06	26.5	0.1	0.0017	18.3	0.0	2.2	1	1	1	2	2	2	2	DeoR	C	terminal	sensor	domain
LysE	PF01810.18	gi|345006157|ref|YP_004809010.1|	-	3e-33	114.9	11.3	3.4e-33	114.7	11.3	1.0	1	0	0	1	1	1	1	LysE	type	translocator
UXS1_N	PF11803.8	gi|345006157|ref|YP_004809010.1|	-	0.33	11.3	1.2	0.64	10.4	0.0	1.9	2	0	0	2	2	2	0	UDP-glucuronate	decarboxylase	N-terminal
adh_short	PF00106.25	gi|345006158|ref|YP_004809011.1|	-	7.9e-38	129.9	0.2	1.1e-37	129.5	0.2	1.1	1	0	0	1	1	1	1	short	chain	dehydrogenase
adh_short_C2	PF13561.6	gi|345006158|ref|YP_004809011.1|	-	4.2e-32	111.6	0.4	4.9e-32	111.3	0.4	1.1	1	0	0	1	1	1	1	Enoyl-(Acyl	carrier	protein)	reductase
KR	PF08659.10	gi|345006158|ref|YP_004809011.1|	-	7.7e-10	39.0	2.1	1e-09	38.5	2.1	1.1	1	0	0	1	1	1	1	KR	domain
3HCDH_N	PF02737.18	gi|345006158|ref|YP_004809011.1|	-	0.043	13.7	0.2	0.063	13.2	0.2	1.3	1	0	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
Shikimate_DH	PF01488.20	gi|345006158|ref|YP_004809011.1|	-	0.18	11.9	0.1	0.25	11.4	0.1	1.3	1	0	0	1	1	1	0	Shikimate	/	quinate	5-dehydrogenase
Glyoxalase	PF00903.25	gi|345006159|ref|YP_004809012.1|	-	9.6e-06	25.8	0.0	3.3e-05	24.1	0.0	2.0	1	1	0	1	1	1	1	Glyoxalase/Bleomycin	resistance	protein/Dioxygenase	superfamily
Glyoxalase_6	PF18029.1	gi|345006159|ref|YP_004809012.1|	-	5.5e-05	23.9	0.2	0.00013	22.7	0.2	1.7	1	1	0	1	1	1	1	Glyoxalase-like	domain
Glyoxalase_4	PF13669.6	gi|345006159|ref|YP_004809012.1|	-	0.0088	16.3	0.0	1.6	9.0	0.0	2.7	2	1	1	3	3	3	2	Glyoxalase/Bleomycin	resistance	protein/Dioxygenase	superfamily
AAA_16	PF13191.6	gi|345006160|ref|YP_004809013.1|	-	3.1e-12	47.2	0.2	8.2e-10	39.3	0.0	2.5	1	1	1	2	2	2	1	AAA	ATPase	domain
AAA_22	PF13401.6	gi|345006160|ref|YP_004809013.1|	-	4.3e-10	40.0	0.0	8.5e-10	39.0	0.0	1.4	1	0	0	1	1	1	1	AAA	domain
AAA	PF00004.29	gi|345006160|ref|YP_004809013.1|	-	1.2e-05	25.7	0.0	2.9e-05	24.5	0.0	1.6	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
NACHT	PF05729.12	gi|345006160|ref|YP_004809013.1|	-	0.00031	20.7	0.0	0.0011	18.9	0.0	1.8	2	0	0	2	2	2	1	NACHT	domain
AAA_11	PF13086.6	gi|345006160|ref|YP_004809013.1|	-	0.00047	20.0	0.0	0.00075	19.4	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
AAA_33	PF13671.6	gi|345006160|ref|YP_004809013.1|	-	0.00095	19.3	0.0	0.0018	18.5	0.0	1.7	1	1	0	1	1	1	1	AAA	domain
Cdc6_C	PF09079.11	gi|345006160|ref|YP_004809013.1|	-	0.0015	18.4	0.1	0.0076	16.2	0.0	2.2	2	0	0	2	2	2	1	CDC6,	C	terminal	winged	helix	domain
AAA_7	PF12775.7	gi|345006160|ref|YP_004809013.1|	-	0.0016	18.0	0.0	0.015	14.8	0.0	2.0	2	0	0	2	2	2	1	P-loop	containing	dynein	motor	region
AAA_30	PF13604.6	gi|345006160|ref|YP_004809013.1|	-	0.0053	16.5	0.1	0.022	14.5	0.0	1.9	2	0	0	2	2	2	1	AAA	domain
AAA_14	PF13173.6	gi|345006160|ref|YP_004809013.1|	-	0.0053	16.8	0.0	0.031	14.3	0.0	2.0	1	1	0	1	1	1	1	AAA	domain
IstB_IS21	PF01695.17	gi|345006160|ref|YP_004809013.1|	-	0.011	15.5	0.4	0.23	11.2	0.4	2.3	1	1	0	1	1	1	0	IstB-like	ATP	binding	protein
Viral_helicase1	PF01443.18	gi|345006160|ref|YP_004809013.1|	-	0.013	15.3	0.0	0.019	14.7	0.0	1.3	1	0	0	1	1	1	0	Viral	(Superfamily	1)	RNA	helicase
AAA_18	PF13238.6	gi|345006160|ref|YP_004809013.1|	-	0.014	15.9	0.0	0.032	14.8	0.0	1.7	1	0	0	1	1	1	0	AAA	domain
NTPase_1	PF03266.15	gi|345006160|ref|YP_004809013.1|	-	0.015	15.2	0.1	0.027	14.4	0.1	1.4	1	0	0	1	1	1	0	NTPase
ATPase_2	PF01637.18	gi|345006160|ref|YP_004809013.1|	-	0.016	15.1	0.0	0.27	11.1	0.0	2.1	1	1	0	1	1	1	0	ATPase	domain	predominantly	from	Archaea
T2SSE	PF00437.20	gi|345006160|ref|YP_004809013.1|	-	0.021	13.9	0.0	0.034	13.2	0.0	1.2	1	0	0	1	1	1	0	Type	II/IV	secretion	system	protein
Rad17	PF03215.15	gi|345006160|ref|YP_004809013.1|	-	0.023	14.6	0.0	0.05	13.5	0.0	1.6	1	1	0	1	1	1	0	Rad17	P-loop	domain
AAA_35	PF14516.6	gi|345006160|ref|YP_004809013.1|	-	0.034	13.0	0.0	0.15	10.8	0.0	1.8	2	0	0	2	2	2	0	AAA-like	domain
TIP49_C	PF17856.1	gi|345006160|ref|YP_004809013.1|	-	0.058	13.5	0.0	0.17	12.1	0.0	1.7	1	0	0	1	1	1	0	TIP49	AAA-lid	domain
DUF2075	PF09848.9	gi|345006160|ref|YP_004809013.1|	-	0.059	12.6	0.0	0.11	11.7	0.0	1.3	1	0	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2075)
AAA_19	PF13245.6	gi|345006160|ref|YP_004809013.1|	-	0.067	13.5	0.0	0.12	12.7	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
RNA_helicase	PF00910.22	gi|345006160|ref|YP_004809013.1|	-	0.077	13.4	0.0	0.15	12.5	0.0	1.5	1	0	0	1	1	1	0	RNA	helicase
AAA_5	PF07728.14	gi|345006160|ref|YP_004809013.1|	-	0.082	12.9	0.0	0.19	11.8	0.0	1.7	1	1	0	1	1	1	0	AAA	domain	(dynein-related	subfamily)
RuvB_N	PF05496.12	gi|345006160|ref|YP_004809013.1|	-	0.085	12.6	0.0	0.16	11.7	0.0	1.4	1	0	0	1	1	1	0	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
TniB	PF05621.11	gi|345006160|ref|YP_004809013.1|	-	0.088	12.2	0.0	0.28	10.6	0.0	1.8	2	0	0	2	2	2	0	Bacterial	TniB	protein
AAA_28	PF13521.6	gi|345006160|ref|YP_004809013.1|	-	0.089	13.0	0.0	0.22	11.8	0.0	1.7	1	0	0	1	1	1	0	AAA	domain
Penicillinase_R	PF03965.16	gi|345006160|ref|YP_004809013.1|	-	0.11	12.9	0.0	0.25	11.7	0.0	1.6	1	0	0	1	1	1	0	Penicillinase	repressor
AAA_6	PF12774.7	gi|345006160|ref|YP_004809013.1|	-	0.12	11.3	0.0	0.21	10.5	0.0	1.3	1	0	0	1	1	1	0	Hydrolytic	ATP	binding	site	of	dynein	motor	region
Sigma54_activat	PF00158.26	gi|345006160|ref|YP_004809013.1|	-	0.12	12.1	0.0	0.2	11.3	0.0	1.3	1	0	0	1	1	1	0	Sigma-54	interaction	domain
AAA_32	PF13654.6	gi|345006160|ref|YP_004809013.1|	-	0.13	11.1	0.0	7.9	5.1	0.0	2.3	2	0	0	2	2	2	0	AAA	domain
TsaE	PF02367.17	gi|345006160|ref|YP_004809013.1|	-	0.14	12.1	0.0	0.28	11.2	0.0	1.4	1	0	0	1	1	1	0	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
Radical_SAM	PF04055.21	gi|345006161|ref|YP_004809014.1|	-	3.5e-06	27.5	0.9	0.0059	17.0	0.1	2.6	1	1	1	2	2	2	2	Radical	SAM	superfamily
Fer4_14	PF13394.6	gi|345006161|ref|YP_004809014.1|	-	0.00031	20.9	0.1	0.00052	20.1	0.1	1.3	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
PASTA	PF03793.19	gi|345006161|ref|YP_004809014.1|	-	0.024	14.5	0.0	0.13	12.1	0.0	2.1	3	0	0	3	3	3	0	PASTA	domain
Fer4_12	PF13353.6	gi|345006161|ref|YP_004809014.1|	-	0.12	12.7	0.0	0.34	11.2	0.0	1.7	2	0	0	2	2	2	0	4Fe-4S	single	cluster	domain
DUF373	PF04123.13	gi|345006163|ref|YP_004809016.1|	-	2.7e-115	385.4	7.7	3.2e-115	385.1	7.7	1.0	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF373)
ATP-synt_I	PF03899.15	gi|345006163|ref|YP_004809016.1|	-	0.45	10.9	11.5	2.1	8.7	4.5	2.8	2	0	0	2	2	2	0	ATP	synthase	I	chain
polyprenyl_synt	PF00348.17	gi|345006164|ref|YP_004809017.1|	-	3.3e-53	180.4	0.0	3.8e-53	180.2	0.0	1.1	1	0	0	1	1	1	1	Polyprenyl	synthetase
EF-G-binding_N	PF07299.11	gi|345006164|ref|YP_004809017.1|	-	0.044	14.3	0.6	0.086	13.4	0.6	1.4	1	0	0	1	1	1	0	Elongation	factor	G-binding	protein,	N-terminal
Methyltransf_11	PF08241.12	gi|345006165|ref|YP_004809018.1|	-	8.1e-23	80.9	0.0	1.2e-22	80.3	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.6	gi|345006165|ref|YP_004809018.1|	-	4.1e-21	75.5	0.0	6.4e-21	74.9	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.6	gi|345006165|ref|YP_004809018.1|	-	2.9e-17	62.9	0.0	3.6e-17	62.6	0.0	1.1	1	0	0	1	1	1	1	Methyltransferase	domain
Ubie_methyltran	PF01209.18	gi|345006165|ref|YP_004809018.1|	-	1.9e-15	56.8	0.0	9.6e-14	51.3	0.0	2.0	1	1	1	2	2	2	1	ubiE/COQ5	methyltransferase	family
Methyltransf_12	PF08242.12	gi|345006165|ref|YP_004809018.1|	-	1.7e-12	47.9	0.0	2.4e-12	47.4	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.6	gi|345006165|ref|YP_004809018.1|	-	1e-10	41.7	0.0	1.5e-10	41.2	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
MetW	PF07021.12	gi|345006165|ref|YP_004809018.1|	-	4.5e-05	23.1	0.0	6.2e-05	22.7	0.0	1.2	1	0	0	1	1	1	1	Methionine	biosynthesis	protein	MetW
RrnaAD	PF00398.20	gi|345006165|ref|YP_004809018.1|	-	0.0001	21.5	0.0	0.00015	21.0	0.0	1.2	1	0	0	1	1	1	1	Ribosomal	RNA	adenine	dimethylase
CMAS	PF02353.20	gi|345006165|ref|YP_004809018.1|	-	0.0002	20.8	0.0	0.00026	20.4	0.0	1.2	1	0	0	1	1	1	1	Mycolic	acid	cyclopropane	synthetase
Methyltransf_9	PF08003.11	gi|345006165|ref|YP_004809018.1|	-	0.001	18.0	0.0	0.0014	17.7	0.0	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1698)
PCMT	PF01135.19	gi|345006165|ref|YP_004809018.1|	-	0.0047	16.7	0.0	0.0068	16.2	0.0	1.3	1	0	0	1	1	1	1	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
MTS	PF05175.14	gi|345006165|ref|YP_004809018.1|	-	0.028	14.0	0.0	0.085	12.4	0.0	1.7	2	0	0	2	2	2	0	Methyltransferase	small	domain
FtsJ	PF01728.19	gi|345006165|ref|YP_004809018.1|	-	0.042	14.0	0.0	0.061	13.4	0.0	1.4	1	1	0	1	1	1	0	FtsJ-like	methyltransferase
Pilin_N	PF07790.11	gi|345006166|ref|YP_004809019.1|	-	6.3e-10	39.8	0.3	1.1e-09	39.1	0.3	1.3	1	0	0	1	1	1	1	Archaeal	Type	IV	pilin,	N-terminal
ALF	PF03752.13	gi|345006167|ref|YP_004809020.1|	-	0.47	10.5	4.8	12	6.0	0.1	3.5	3	0	0	3	3	3	0	Short	repeats	of	unknown	function
HTH_IclR	PF09339.10	gi|345006168|ref|YP_004809021.1|	-	0.0081	15.9	0.1	0.024	14.4	0.0	1.8	2	0	0	2	2	2	1	IclR	helix-turn-helix	domain
MarR_2	PF12802.7	gi|345006168|ref|YP_004809021.1|	-	0.01	15.7	0.1	0.024	14.5	0.1	1.5	1	0	0	1	1	1	0	MarR	family
HTH_24	PF13412.6	gi|345006168|ref|YP_004809021.1|	-	0.051	13.1	0.1	0.084	12.5	0.1	1.3	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
LAX	PF15681.5	gi|345006168|ref|YP_004809021.1|	-	0.31	9.8	1.2	0.5	9.1	1.2	1.2	1	0	0	1	1	1	0	Lymphocyte	activation	family	X
DUF3309	PF11752.8	gi|345006168|ref|YP_004809021.1|	-	0.97	9.5	6.3	0.1	12.7	2.0	1.6	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3309)
ETF	PF01012.21	gi|345006169|ref|YP_004809022.1|	-	1.7e-37	129.1	3.5	2.2e-37	128.7	3.5	1.2	1	0	0	1	1	1	1	Electron	transfer	flavoprotein	domain
ETF_alpha	PF00766.19	gi|345006170|ref|YP_004809023.1|	-	2.9e-34	116.9	0.3	7.6e-34	115.6	0.1	1.8	2	0	0	2	2	2	1	Electron	transfer	flavoprotein	FAD-binding	domain
ETF	PF01012.21	gi|345006170|ref|YP_004809023.1|	-	4.1e-25	88.7	0.3	6.4e-25	88.1	0.3	1.3	1	0	0	1	1	1	1	Electron	transfer	flavoprotein	domain
V-ATPase_G_2	PF16999.5	gi|345006171|ref|YP_004809024.1|	-	2.8e-06	27.7	26.0	3.4e-06	27.4	26.0	1.1	1	0	0	1	1	1	1	Vacuolar	(H+)-ATPase	G	subunit
DUF3552	PF12072.8	gi|345006171|ref|YP_004809024.1|	-	0.0015	18.0	26.0	1.8	8.0	26.0	2.4	1	1	0	1	1	1	1	Domain	of	unknown	function	(DUF3552)
DUF883	PF05957.13	gi|345006171|ref|YP_004809024.1|	-	0.0039	17.8	16.8	0.081	13.5	7.1	2.0	1	1	1	2	2	2	2	Bacterial	protein	of	unknown	function	(DUF883)
GCN5L1	PF06320.13	gi|345006171|ref|YP_004809024.1|	-	0.017	15.2	1.5	0.017	15.2	1.5	2.1	1	1	1	2	2	2	0	GCN5-like	protein	1	(GCN5L1)
ATP-synt_B	PF00430.18	gi|345006171|ref|YP_004809024.1|	-	0.025	14.6	30.0	0.045	13.9	21.0	2.3	1	1	1	2	2	2	0	ATP	synthase	B/B'	CF(0)
GerPC	PF10737.9	gi|345006171|ref|YP_004809024.1|	-	0.15	12.1	4.6	0.16	12.0	4.6	1.1	1	0	0	1	1	1	0	Spore	germination	protein	GerPC
DivIVA	PF05103.13	gi|345006171|ref|YP_004809024.1|	-	0.16	12.0	19.2	3.5	7.7	13.4	2.2	1	1	1	2	2	2	0	DivIVA	protein
UBA_e1_thiolCys	PF10585.9	gi|345006171|ref|YP_004809024.1|	-	0.21	11.5	4.5	0.18	11.7	3.0	1.6	1	1	1	2	2	2	0	Ubiquitin-activating	enzyme	active	site
DUF3435	PF11917.8	gi|345006171|ref|YP_004809024.1|	-	0.25	10.2	6.2	0.27	10.1	6.2	1.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3435)
HrpE	PF06188.12	gi|345006171|ref|YP_004809024.1|	-	0.32	10.9	13.9	0.87	9.4	13.9	1.7	1	1	0	1	1	1	0	HrpE/YscL/FliH	and	V-type	ATPase	subunit	E
YtxH	PF12732.7	gi|345006171|ref|YP_004809024.1|	-	1.5	9.4	13.6	1.6e+03	-0.3	13.6	2.3	1	1	0	1	1	1	0	YtxH-like	protein
V-ATPase_G	PF03179.15	gi|345006171|ref|YP_004809024.1|	-	1.6	9.3	24.5	20	5.8	24.5	2.1	1	1	0	1	1	1	0	Vacuolar	(H+)-ATPase	G	subunit
DUF3987	PF13148.6	gi|345006171|ref|YP_004809024.1|	-	1.7	7.6	14.2	2	7.3	14.2	1.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3987)
AAA_11	PF13086.6	gi|345006171|ref|YP_004809024.1|	-	2.8	7.7	8.5	3.2	7.5	8.5	1.1	1	0	0	1	1	1	0	AAA	domain
MIF4G_like_2	PF09090.11	gi|345006171|ref|YP_004809024.1|	-	3.7	7.0	9.7	4.4	6.7	9.7	1.2	1	0	0	1	1	1	0	MIF4G	like
Arm-DNA-bind_3	PF13356.6	gi|345006171|ref|YP_004809024.1|	-	5.2	7.5	10.8	8	6.9	5.8	2.6	1	1	1	2	2	2	0	Arm	DNA-binding	domain
V_ATPase_I	PF01496.19	gi|345006172|ref|YP_004809025.1|	-	1e-22	80.0	0.6	1.3e-14	53.2	0.0	2.9	2	1	0	2	2	2	2	V-type	ATPase	116kDa	subunit	family
DUF4140	PF13600.6	gi|345006172|ref|YP_004809025.1|	-	0.0028	18.1	2.5	0.78	10.2	0.7	2.4	2	0	0	2	2	2	2	N-terminal	domain	of	unknown	function	(DUF4140)
EMP24_GP25L	PF01105.24	gi|345006172|ref|YP_004809025.1|	-	0.14	12.0	0.1	6.1	6.8	0.0	2.2	2	0	0	2	2	2	0	emp24/gp25L/p24	family/GOLD
Seryl_tRNA_N	PF02403.22	gi|345006172|ref|YP_004809025.1|	-	0.23	11.7	1.2	3.8	7.8	0.1	2.2	2	0	0	2	2	2	0	Seryl-tRNA	synthetase	N-terminal	domain
DUF2968	PF11180.8	gi|345006172|ref|YP_004809025.1|	-	0.24	11.0	2.9	1.2	8.7	0.1	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2968)
DUF2353	PF09789.9	gi|345006172|ref|YP_004809025.1|	-	0.44	9.9	2.7	0.31	10.4	0.2	1.7	2	0	0	2	2	2	0	Uncharacterized	coiled-coil	protein	(DUF2353)
DHR10	PF18595.1	gi|345006172|ref|YP_004809025.1|	-	0.59	10.2	5.9	0.31	11.1	2.0	2.0	2	0	0	2	2	2	0	Designed	helical	repeat	protein	10	domain
UPF0242	PF06785.11	gi|345006172|ref|YP_004809025.1|	-	0.64	10.1	2.4	1.5	8.9	0.2	2.3	2	0	0	2	2	2	0	Uncharacterised	protein	family	(UPF0242)	N-terminus
TMF_TATA_bd	PF12325.8	gi|345006172|ref|YP_004809025.1|	-	1.3	9.3	3.8	10	6.4	0.8	2.3	2	0	0	2	2	2	0	TATA	element	modulatory	factor	1	TATA	binding
APG6_N	PF17675.1	gi|345006172|ref|YP_004809025.1|	-	2.9	8.4	8.8	0.79	10.2	2.2	2.2	2	0	0	2	2	2	0	Apg6	coiled-coil	region
HalX	PF08663.10	gi|345006172|ref|YP_004809025.1|	-	6.9	7.1	10.7	5.3	7.4	2.1	2.5	2	0	0	2	2	2	0	HalX	domain
ATP-synt_C	PF00137.21	gi|345006173|ref|YP_004809026.1|	-	1.8e-13	50.6	9.4	2.3e-13	50.3	9.4	1.1	1	0	0	1	1	1	1	ATP	synthase	subunit	C
vATP-synt_E	PF01991.18	gi|345006174|ref|YP_004809027.1|	-	1.7e-40	138.6	10.9	2.3e-40	138.2	10.9	1.2	1	0	0	1	1	1	1	ATP	synthase	(E/31	kDa)	subunit
V-ATPase_G_2	PF16999.5	gi|345006174|ref|YP_004809027.1|	-	0.0019	18.6	18.5	0.0041	17.5	18.5	1.6	1	0	0	1	1	1	1	Vacuolar	(H+)-ATPase	G	subunit
ATP-synt_B	PF00430.18	gi|345006174|ref|YP_004809027.1|	-	0.028	14.5	20.6	0.028	14.5	20.6	2.1	1	1	1	2	2	2	0	ATP	synthase	B/B'	CF(0)
V_ATPase_I	PF01496.19	gi|345006174|ref|YP_004809027.1|	-	1.1	7.1	2.6	1.1	7.0	2.6	1.0	1	0	0	1	1	1	0	V-type	ATPase	116kDa	subunit	family
HrpE	PF06188.12	gi|345006174|ref|YP_004809027.1|	-	1.6	8.5	12.5	4.2	7.2	12.6	1.7	1	1	1	2	2	2	0	HrpE/YscL/FliH	and	V-type	ATPase	subunit	E
DivIVA	PF05103.13	gi|345006174|ref|YP_004809027.1|	-	2.8	8.0	13.5	0.87	9.7	8.8	2.2	1	1	1	2	2	2	0	DivIVA	protein
YtxH	PF12732.7	gi|345006174|ref|YP_004809027.1|	-	9	6.9	7.3	2.9e+02	2.1	7.3	2.6	1	1	0	1	1	1	0	YtxH-like	protein
vATP-synt_AC39	PF01992.16	gi|345006175|ref|YP_004809028.1|	-	6.3e-78	262.6	2.1	7.1e-78	262.5	2.1	1.0	1	0	0	1	1	1	1	ATP	synthase	(C/AC39)	subunit
TFIIA_gamma_N	PF02268.16	gi|345006175|ref|YP_004809028.1|	-	0.13	12.3	1.8	0.96	9.5	0.2	3.0	3	0	0	3	3	3	0	Transcription	initiation	factor	IIA,	gamma	subunit,	helical	domain
ATP-synt_F	PF01990.17	gi|345006176|ref|YP_004809029.1|	-	2.6e-13	50.1	0.0	2.9e-13	49.9	0.0	1.1	1	0	0	1	1	1	1	ATP	synthase	(F/14-kDa)	subunit
ATP-synt_ab	PF00006.25	gi|345006177|ref|YP_004809030.1|	-	8.6e-91	303.3	0.0	1.1e-90	302.9	0.0	1.2	1	0	0	1	1	1	1	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
ATP-synt_ab_Xtn	PF16886.5	gi|345006177|ref|YP_004809030.1|	-	6.1e-40	135.9	0.1	1.2e-39	134.9	0.1	1.5	1	0	0	1	1	1	1	ATPsynthase	alpha/beta	subunit	N-term	extension
ATP-synt_ab_N	PF02874.23	gi|345006177|ref|YP_004809030.1|	-	1.7e-11	44.4	4.7	1.7e-11	44.4	4.7	2.4	2	0	0	2	2	2	1	ATP	synthase	alpha/beta	family,	beta-barrel	domain
PP2C_C	PF07830.13	gi|345006177|ref|YP_004809030.1|	-	0.08	13.4	0.8	0.25	11.8	0.8	1.8	1	0	0	1	1	1	0	Protein	serine/threonine	phosphatase	2C,	C-terminal	domain
Peptidase_M23	PF01551.22	gi|345006177|ref|YP_004809030.1|	-	0.1	12.9	0.2	4	7.7	0.0	2.8	2	0	0	2	2	2	0	Peptidase	family	M23
AAA_22	PF13401.6	gi|345006177|ref|YP_004809030.1|	-	0.15	12.3	0.0	0.35	11.2	0.0	1.6	1	0	0	1	1	1	0	AAA	domain
ATP-synt_ab	PF00006.25	gi|345006178|ref|YP_004809031.1|	-	6.9e-65	218.7	0.0	9.4e-65	218.2	0.0	1.2	1	0	0	1	1	1	1	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
ATP-synt_ab_N	PF02874.23	gi|345006178|ref|YP_004809031.1|	-	1.1e-14	54.6	0.7	3.2e-14	53.2	0.7	1.8	1	0	0	1	1	1	1	ATP	synthase	alpha/beta	family,	beta-barrel	domain
HAS-barrel	PF09378.10	gi|345006178|ref|YP_004809031.1|	-	0.032	14.4	2.2	0.093	12.9	0.8	2.6	2	1	0	2	2	2	0	HAS	barrel	domain
YjeF_N	PF03853.15	gi|345006179|ref|YP_004809032.1|	-	3.9e-37	127.8	0.2	5.1e-37	127.4	0.2	1.1	1	0	0	1	1	1	1	YjeF-related	protein	N-terminus
CaMKII_AD	PF08332.10	gi|345006179|ref|YP_004809032.1|	-	0.12	12.6	0.0	0.18	12.0	0.0	1.3	1	0	0	1	1	1	0	Calcium/calmodulin	dependent	protein	kinase	II	association	domain
Cpn60_TCP1	PF00118.24	gi|345006180|ref|YP_004809033.1|	-	4.3e-177	589.7	13.3	4.8e-177	589.5	13.3	1.0	1	0	0	1	1	1	1	TCP-1/cpn60	chaperonin	family
Creatininase	PF02633.14	gi|345006181|ref|YP_004809034.1|	-	4.2e-63	213.0	0.8	4.7e-63	212.9	0.8	1.0	1	0	0	1	1	1	1	Creatinine	amidohydrolase
DrsE	PF02635.15	gi|345006182|ref|YP_004809035.1|	-	1.3e-09	38.4	0.0	1.6e-09	38.2	0.0	1.1	1	0	0	1	1	1	1	DsrE/DsrF-like	family
DrsE_2	PF13686.6	gi|345006182|ref|YP_004809035.1|	-	0.00068	19.6	0.2	0.00097	19.1	0.2	1.5	1	1	0	1	1	1	1	DsrE/DsrF/DrsH-like	family
LMWPc	PF01451.21	gi|345006182|ref|YP_004809035.1|	-	0.0047	17.3	0.1	0.0057	17.0	0.1	1.1	1	0	0	1	1	1	1	Low	molecular	weight	phosphotyrosine	protein	phosphatase
AAA_17	PF13207.6	gi|345006183|ref|YP_004809036.1|	-	1e-20	74.6	0.4	1.4e-20	74.1	0.4	1.2	1	0	0	1	1	1	1	AAA	domain
AAA_18	PF13238.6	gi|345006183|ref|YP_004809036.1|	-	7.4e-10	39.5	0.0	1.3e-09	38.7	0.0	1.4	1	1	0	1	1	1	1	AAA	domain
AAA_33	PF13671.6	gi|345006183|ref|YP_004809036.1|	-	9.4e-05	22.6	0.1	0.00015	21.9	0.1	1.3	1	0	0	1	1	1	1	AAA	domain
ADK	PF00406.22	gi|345006183|ref|YP_004809036.1|	-	0.00011	22.3	0.1	0.00027	21.1	0.1	1.6	1	1	0	1	1	1	1	Adenylate	kinase
RNA_binding	PF01877.17	gi|345006184|ref|YP_004809037.1|	-	3e-08	33.9	0.5	2.3e-07	31.1	0.5	2.0	1	1	0	1	1	1	1	RNA	binding
DUF3320	PF11784.8	gi|345006184|ref|YP_004809037.1|	-	0.029	14.3	0.5	0.055	13.4	0.5	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3320)
Glyco_hydro2_C5	PF18565.1	gi|345006184|ref|YP_004809037.1|	-	0.045	13.6	0.0	0.075	12.9	0.0	1.3	1	0	0	1	1	1	0	Glycoside	hydrolase	family	2	C-terminal	domain	5
HPP	PF04982.13	gi|345006185|ref|YP_004809038.1|	-	1.7e-15	57.3	10.8	2.6e-15	56.7	10.8	1.2	1	0	0	1	1	1	1	HPP	family
PelG	PF16933.5	gi|345006185|ref|YP_004809038.1|	-	0.055	12.3	1.0	0.063	12.1	1.0	1.2	1	0	0	1	1	1	0	Putative	exopolysaccharide	Exporter	(EPS-E)
MgtE	PF01769.16	gi|345006186|ref|YP_004809039.1|	-	1.1e-21	77.4	13.4	1.1e-21	77.4	13.4	1.4	2	0	0	2	2	2	1	Divalent	cation	transporter
SLATT_fungal	PF18142.1	gi|345006186|ref|YP_004809039.1|	-	0.29	11.1	8.5	0.5	10.4	8.5	1.4	1	0	0	1	1	1	0	SMODS	and	SLOG-associating	2TM	effector	domain
Rax2	PF12768.7	gi|345006186|ref|YP_004809039.1|	-	1.1	8.7	8.0	1.5	8.2	8.0	1.3	1	1	0	1	1	1	0	Cortical	protein	marker	for	cell	polarity
MgtE	PF01769.16	gi|345006187|ref|YP_004809040.1|	-	6.2e-22	78.3	4.8	6.2e-22	78.3	4.8	1.5	2	0	0	2	2	2	1	Divalent	cation	transporter
MFS_1	PF07690.16	gi|345006188|ref|YP_004809041.1|	-	1.9e-43	148.8	71.6	4e-37	128.0	42.8	2.0	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
MFS_1_like	PF12832.7	gi|345006188|ref|YP_004809041.1|	-	6.2e-05	22.0	3.1	6.2e-05	22.0	3.1	2.5	1	1	2	3	3	3	3	MFS_1	like	family
OATP	PF03137.20	gi|345006188|ref|YP_004809041.1|	-	0.3	9.3	8.3	0.13	10.6	0.8	3.0	1	1	2	3	3	3	0	Organic	Anion	Transporter	Polypeptide	(OATP)	family
Peptidase_S9	PF00326.21	gi|345006189|ref|YP_004809042.1|	-	4.4e-35	121.1	0.7	6.9e-35	120.5	0.7	1.2	1	0	0	1	1	1	1	Prolyl	oligopeptidase	family
Peptidase_S15	PF02129.18	gi|345006189|ref|YP_004809042.1|	-	2.1e-09	37.4	0.5	3.4e-08	33.4	0.3	2.1	1	1	1	2	2	2	1	X-Pro	dipeptidyl-peptidase	(S15	family)
DLH	PF01738.18	gi|345006189|ref|YP_004809042.1|	-	8.9e-08	31.9	0.6	9.5e-07	28.6	0.6	2.0	1	1	0	1	1	1	1	Dienelactone	hydrolase	family
DPPIV_N	PF00930.21	gi|345006189|ref|YP_004809042.1|	-	1.8e-06	27.0	0.0	2.2e-05	23.4	0.0	2.6	2	1	1	3	3	3	1	Dipeptidyl	peptidase	IV	(DPP	IV)	N-terminal	region
PD40	PF07676.12	gi|345006189|ref|YP_004809042.1|	-	3.9e-06	26.7	6.0	1.4	9.0	0.0	5.9	6	0	0	6	6	6	2	WD40-like	Beta	Propeller	Repeat
Esterase	PF00756.20	gi|345006189|ref|YP_004809042.1|	-	4.6e-05	23.2	0.5	0.00024	20.8	0.1	2.4	3	0	0	3	3	3	1	Putative	esterase
PQQ_2	PF13360.6	gi|345006189|ref|YP_004809042.1|	-	6.9e-05	22.5	5.4	0.00041	20.0	1.3	2.5	1	1	1	2	2	2	1	PQQ-like	domain
Abhydrolase_1	PF00561.20	gi|345006189|ref|YP_004809042.1|	-	0.00017	21.4	0.3	0.00032	20.5	0.3	1.4	1	0	0	1	1	1	1	alpha/beta	hydrolase	fold
Hydrolase_4	PF12146.8	gi|345006189|ref|YP_004809042.1|	-	0.011	15.0	0.9	0.85	8.8	0.5	2.2	1	1	0	2	2	2	0	Serine	aminopeptidase,	S33
AXE1	PF05448.12	gi|345006189|ref|YP_004809042.1|	-	0.017	13.8	0.1	0.17	10.6	0.1	2.0	1	1	0	1	1	1	0	Acetyl	xylan	esterase	(AXE1)
ANAPC4_WD40	PF12894.7	gi|345006189|ref|YP_004809042.1|	-	0.045	14.1	0.0	3.3	8.1	0.0	3.4	2	1	1	3	3	3	0	Anaphase-promoting	complex	subunit	4	WD40	domain
BAAT_C	PF08840.11	gi|345006189|ref|YP_004809042.1|	-	0.2	11.6	0.0	0.36	10.7	0.0	1.3	1	0	0	1	1	1	0	BAAT	/	Acyl-CoA	thioester	hydrolase	C	terminal
SRP54	PF00448.22	gi|345006190|ref|YP_004809043.1|	-	3.6e-62	209.5	0.1	6.9e-62	208.6	0.1	1.5	1	0	0	1	1	1	1	SRP54-type	protein,	GTPase	domain
SRP_SPB	PF02978.19	gi|345006190|ref|YP_004809043.1|	-	1.6e-28	99.2	7.4	1.6e-28	99.2	7.4	2.9	2	1	1	3	3	3	1	Signal	peptide	binding	domain
SRP54_N	PF02881.19	gi|345006190|ref|YP_004809043.1|	-	5.5e-19	68.2	4.2	8.1e-19	67.6	0.2	3.0	3	0	0	3	3	3	1	SRP54-type	protein,	helical	bundle	domain
CbiA	PF01656.23	gi|345006190|ref|YP_004809043.1|	-	7.2e-05	22.8	0.0	0.00018	21.6	0.0	1.6	1	1	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
Zeta_toxin	PF06414.12	gi|345006190|ref|YP_004809043.1|	-	0.0016	17.8	0.0	0.0061	15.9	0.0	2.0	2	0	0	2	2	2	1	Zeta	toxin
SMC_N	PF02463.19	gi|345006190|ref|YP_004809043.1|	-	0.0022	17.5	0.0	0.004	16.6	0.0	1.4	1	0	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
cobW	PF02492.19	gi|345006190|ref|YP_004809043.1|	-	0.0058	16.2	0.2	0.046	13.3	0.2	2.2	1	1	0	1	1	1	1	CobW/HypB/UreG,	nucleotide-binding	domain
APS_kinase	PF01583.20	gi|345006190|ref|YP_004809043.1|	-	0.0077	16.1	0.0	0.02	14.8	0.0	1.7	1	0	0	1	1	1	1	Adenylylsulphate	kinase
ArsA_ATPase	PF02374.15	gi|345006190|ref|YP_004809043.1|	-	0.0094	15.2	7.6	0.029	13.6	0.0	3.7	4	0	0	4	4	4	1	Anion-transporting	ATPase
AAA_16	PF13191.6	gi|345006190|ref|YP_004809043.1|	-	0.012	16.0	0.0	0.028	14.8	0.0	1.6	1	0	0	1	1	1	0	AAA	ATPase	domain
AAA_22	PF13401.6	gi|345006190|ref|YP_004809043.1|	-	0.017	15.4	0.0	0.075	13.3	0.0	2.1	3	0	0	3	3	2	0	AAA	domain
Thymidylate_kin	PF02223.17	gi|345006190|ref|YP_004809043.1|	-	0.03	14.0	0.4	0.16	11.6	0.0	2.3	3	0	0	3	3	3	0	Thymidylate	kinase
AAA_18	PF13238.6	gi|345006190|ref|YP_004809043.1|	-	0.03	14.9	0.0	0.17	12.4	0.0	2.2	2	0	0	2	2	2	0	AAA	domain
AAA_23	PF13476.6	gi|345006190|ref|YP_004809043.1|	-	0.036	14.6	0.0	0.11	13.0	0.0	1.9	2	1	0	2	2	2	0	AAA	domain
NTPase_1	PF03266.15	gi|345006190|ref|YP_004809043.1|	-	0.042	13.8	0.3	0.66	9.9	0.0	2.4	1	1	0	2	2	2	0	NTPase
AAA_33	PF13671.6	gi|345006190|ref|YP_004809043.1|	-	0.08	13.1	0.0	0.17	12.0	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
ResIII	PF04851.15	gi|345006190|ref|YP_004809043.1|	-	0.092	12.7	0.0	0.21	11.6	0.0	1.7	2	0	0	2	2	1	0	Type	III	restriction	enzyme,	res	subunit
MobB	PF03205.14	gi|345006190|ref|YP_004809043.1|	-	0.093	12.6	0.0	0.2	11.6	0.0	1.5	1	0	0	1	1	1	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
KTI12	PF08433.10	gi|345006190|ref|YP_004809043.1|	-	0.12	11.8	0.0	0.26	10.7	0.0	1.5	1	0	0	1	1	1	0	Chromatin	associated	protein	KTI12
AAA_15	PF13175.6	gi|345006190|ref|YP_004809043.1|	-	0.15	11.8	0.0	0.25	11.0	0.0	1.4	1	0	0	1	1	1	0	AAA	ATPase	domain
AAA_31	PF13614.6	gi|345006190|ref|YP_004809043.1|	-	0.16	11.9	0.0	0.35	10.8	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
KdpC	PF02669.15	gi|345006190|ref|YP_004809043.1|	-	0.2	11.4	0.5	0.5	10.2	0.1	1.8	2	0	0	2	2	2	0	K+-transporting	ATPase,	c	chain
T3SS_basalb_I	PF17001.5	gi|345006190|ref|YP_004809043.1|	-	0.21	12.2	9.7	0.33	11.5	0.5	3.8	3	0	0	3	3	3	0	Type	III	secretion	basal	body	protein	I,	YscI,	HrpB,	PscI
Proteasome	PF00227.26	gi|345006191|ref|YP_004809044.1|	-	1.5e-12	47.4	0.1	2.9e-12	46.5	0.1	1.5	1	1	0	1	1	1	1	Proteasome	subunit
SRP54	PF00448.22	gi|345006192|ref|YP_004809045.1|	-	7.1e-66	221.6	0.3	1.1e-65	221.0	0.3	1.3	1	0	0	1	1	1	1	SRP54-type	protein,	GTPase	domain
SRP54_N	PF02881.19	gi|345006192|ref|YP_004809045.1|	-	1.8e-13	50.5	0.4	1.8e-13	50.5	0.4	2.0	2	0	0	2	2	2	1	SRP54-type	protein,	helical	bundle	domain
APS_kinase	PF01583.20	gi|345006192|ref|YP_004809045.1|	-	0.0014	18.5	0.0	0.0025	17.7	0.0	1.4	1	0	0	1	1	1	1	Adenylylsulphate	kinase
AAA_22	PF13401.6	gi|345006192|ref|YP_004809045.1|	-	0.0015	18.8	0.0	0.0061	16.8	0.0	1.9	2	0	0	2	2	2	1	AAA	domain
AAA_30	PF13604.6	gi|345006192|ref|YP_004809045.1|	-	0.0045	16.7	0.8	0.017	14.9	0.8	1.9	1	1	0	1	1	1	1	AAA	domain
Thymidylate_kin	PF02223.17	gi|345006192|ref|YP_004809045.1|	-	0.02	14.6	0.1	0.32	10.6	0.0	2.4	2	0	0	2	2	2	0	Thymidylate	kinase
Zeta_toxin	PF06414.12	gi|345006192|ref|YP_004809045.1|	-	0.026	13.8	0.0	0.044	13.1	0.0	1.5	1	1	0	1	1	1	0	Zeta	toxin
NTPase_1	PF03266.15	gi|345006192|ref|YP_004809045.1|	-	0.041	13.8	0.0	0.079	12.9	0.0	1.4	1	0	0	1	1	1	0	NTPase
AAA_33	PF13671.6	gi|345006192|ref|YP_004809045.1|	-	0.056	13.6	0.1	0.15	12.2	0.1	1.8	1	1	0	1	1	1	0	AAA	domain
KTI12	PF08433.10	gi|345006192|ref|YP_004809045.1|	-	0.057	12.9	0.0	0.093	12.2	0.0	1.3	1	0	0	1	1	1	0	Chromatin	associated	protein	KTI12
AAA_17	PF13207.6	gi|345006192|ref|YP_004809045.1|	-	0.081	13.4	0.1	0.081	13.4	0.1	2.2	3	0	0	3	3	3	0	AAA	domain
AAA_24	PF13479.6	gi|345006192|ref|YP_004809045.1|	-	0.12	12.1	0.0	0.25	11.0	0.0	1.6	1	1	0	1	1	1	0	AAA	domain
AAA_16	PF13191.6	gi|345006192|ref|YP_004809045.1|	-	0.16	12.4	0.0	0.16	12.4	0.0	2.9	2	2	0	3	3	2	0	AAA	ATPase	domain
eIF-3c_N	PF05470.12	gi|345006192|ref|YP_004809045.1|	-	0.2	10.0	5.1	0.27	9.5	5.1	1.2	1	0	0	1	1	1	0	Eukaryotic	translation	initiation	factor	3	subunit	8	N-terminus
AAA_28	PF13521.6	gi|345006192|ref|YP_004809045.1|	-	1.1	9.5	5.5	0.3	11.3	0.1	2.8	3	1	0	3	3	3	0	AAA	domain
CDC45	PF02724.14	gi|345006192|ref|YP_004809045.1|	-	8.2	4.6	6.8	10	4.3	6.8	1.1	1	0	0	1	1	1	0	CDC45-like	protein
Prefoldin	PF02996.17	gi|345006193|ref|YP_004809046.1|	-	6.6e-23	80.9	4.3	6.6e-23	80.9	4.3	2.1	1	1	1	2	2	2	1	Prefoldin	subunit
Prefoldin_2	PF01920.20	gi|345006193|ref|YP_004809046.1|	-	1.3e-05	25.1	28.8	0.0088	16.0	8.8	3.3	1	1	2	3	3	3	2	Prefoldin	subunit
ZapB	PF06005.12	gi|345006193|ref|YP_004809046.1|	-	2.9e-05	24.4	22.6	0.00011	22.6	9.1	2.2	2	0	0	2	2	2	1	Cell	division	protein	ZapB
APG6_N	PF17675.1	gi|345006193|ref|YP_004809046.1|	-	4.2e-05	24.1	19.2	0.0063	17.0	4.7	2.1	2	0	0	2	2	2	2	Apg6	coiled-coil	region
Dynamitin	PF04912.14	gi|345006193|ref|YP_004809046.1|	-	0.00046	19.6	13.3	0.0019	17.6	3.2	2.0	2	0	0	2	2	2	1	Dynamitin
Spc7	PF08317.11	gi|345006193|ref|YP_004809046.1|	-	0.00056	18.9	17.9	0.0032	16.4	3.6	2.0	2	0	0	2	2	2	2	Spc7	kinetochore	protein
OmpH	PF03938.14	gi|345006193|ref|YP_004809046.1|	-	0.00059	20.2	22.9	0.0063	16.9	10.7	2.1	2	0	0	2	2	2	2	Outer	membrane	protein	(OmpH-like)
UPF0242	PF06785.11	gi|345006193|ref|YP_004809046.1|	-	0.00074	19.7	16.0	0.0083	16.3	5.3	2.0	2	0	0	2	2	2	2	Uncharacterised	protein	family	(UPF0242)	N-terminus
PHM7_cyt	PF14703.6	gi|345006193|ref|YP_004809046.1|	-	0.00076	19.8	6.5	0.02	15.1	0.9	2.1	2	0	0	2	2	2	1	Cytosolic	domain	of	10TM	putative	phosphate	transporter
ATG16	PF08614.11	gi|345006193|ref|YP_004809046.1|	-	0.001	19.4	16.5	0.082	13.1	2.9	2.1	2	0	0	2	2	2	2	Autophagy	protein	16	(ATG16)
DUF812	PF05667.11	gi|345006193|ref|YP_004809046.1|	-	0.0011	17.9	17.7	0.038	12.9	6.9	2.0	2	0	0	2	2	2	2	Protein	of	unknown	function	(DUF812)
PI3K_P85_iSH2	PF16454.5	gi|345006193|ref|YP_004809046.1|	-	0.0022	17.6	12.0	0.0041	16.7	12.0	1.4	1	1	0	1	1	1	1	Phosphatidylinositol	3-kinase	regulatory	subunit	P85	inter-SH2	domain
DUF3552	PF12072.8	gi|345006193|ref|YP_004809046.1|	-	0.0025	17.3	14.8	0.013	14.9	4.5	2.2	2	0	0	2	2	2	2	Domain	of	unknown	function	(DUF3552)
DUF3450	PF11932.8	gi|345006193|ref|YP_004809046.1|	-	0.0032	16.8	17.5	0.0094	15.3	6.9	2.1	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF3450)
FapA	PF03961.13	gi|345006193|ref|YP_004809046.1|	-	0.0063	15.2	5.6	0.14	10.7	0.7	2.0	2	0	0	2	2	2	2	Flagellar	Assembly	Protein	A
YabA	PF06156.13	gi|345006193|ref|YP_004809046.1|	-	0.0085	16.7	11.6	0.089	13.4	5.8	2.1	2	0	0	2	2	2	1	Initiation	control	protein	YabA
DUF1192	PF06698.11	gi|345006193|ref|YP_004809046.1|	-	0.012	15.6	6.7	1.1	9.4	2.3	2.7	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF1192)
CENP-F_leu_zip	PF10473.9	gi|345006193|ref|YP_004809046.1|	-	0.014	15.4	16.6	0.41	10.7	1.5	2.3	2	0	0	2	2	2	0	Leucine-rich	repeats	of	kinetochore	protein	Cenp-F/LEK1
Jnk-SapK_ap_N	PF09744.9	gi|345006193|ref|YP_004809046.1|	-	0.016	15.5	12.7	0.033	14.4	3.4	2.1	2	0	0	2	2	2	0	JNK_SAPK-associated	protein-1
Sec8_exocyst	PF04048.14	gi|345006193|ref|YP_004809046.1|	-	0.017	15.0	6.4	0.04	13.8	0.2	2.2	2	0	0	2	2	2	0	Sec8	exocyst	complex	component	specific	domain
Sipho_Gp157	PF05565.11	gi|345006193|ref|YP_004809046.1|	-	0.023	14.7	1.8	0.023	14.7	1.8	2.2	2	0	0	2	2	2	0	Siphovirus	Gp157
AAA_11	PF13086.6	gi|345006193|ref|YP_004809046.1|	-	0.028	14.2	2.6	0.042	13.6	2.6	1.2	1	0	0	1	1	1	0	AAA	domain
FlaC_arch	PF05377.11	gi|345006193|ref|YP_004809046.1|	-	0.031	14.6	16.2	0.064	13.6	1.2	3.5	3	2	2	5	5	4	0	Flagella	accessory	protein	C	(FlaC)
DUF2046	PF09755.9	gi|345006193|ref|YP_004809046.1|	-	0.04	13.2	10.0	0.093	11.9	0.7	2.1	2	0	0	2	2	2	0	Uncharacterized	conserved	protein	H4	(DUF2046)
DivIC	PF04977.15	gi|345006193|ref|YP_004809046.1|	-	0.041	13.6	25.5	0.041	13.6	7.4	3.0	2	1	1	3	3	2	0	Septum	formation	initiator
Cluap1	PF10234.9	gi|345006193|ref|YP_004809046.1|	-	0.046	13.1	10.6	0.11	11.8	2.4	2.0	2	0	0	2	2	2	0	Clusterin-associated	protein-1
Golgin_A5	PF09787.9	gi|345006193|ref|YP_004809046.1|	-	0.047	13.1	17.2	0.063	12.7	7.4	2.0	2	0	0	2	2	2	0	Golgin	subfamily	A	member	5
CC2-LZ	PF16516.5	gi|345006193|ref|YP_004809046.1|	-	0.051	13.9	1.0	0.051	13.9	1.0	2.3	2	0	0	2	2	2	0	Leucine	zipper	of	domain	CC2	of	NEMO,	NF-kappa-B	essential	modulator
IFT57	PF10498.9	gi|345006193|ref|YP_004809046.1|	-	0.058	12.4	16.0	0.064	12.2	0.7	2.1	2	0	0	2	2	2	0	Intra-flagellar	transport	protein	57
Fib_alpha	PF08702.10	gi|345006193|ref|YP_004809046.1|	-	0.064	13.4	11.2	0.22	11.7	5.0	2.2	2	0	0	2	2	2	0	Fibrinogen	alpha/beta	chain	family
YlqD	PF11068.8	gi|345006193|ref|YP_004809046.1|	-	0.07	13.5	20.9	1	9.8	2.5	2.3	2	0	0	2	2	2	0	YlqD	protein
Phage_GP20	PF06810.11	gi|345006193|ref|YP_004809046.1|	-	0.085	12.7	17.2	0.3	10.9	4.2	2.1	2	0	0	2	2	2	0	Phage	minor	structural	protein	GP20
GAS	PF13851.6	gi|345006193|ref|YP_004809046.1|	-	0.097	12.0	15.1	0.96	8.8	1.3	2.1	2	0	0	2	2	2	0	Growth-arrest	specific	micro-tubule	binding
TMPIT	PF07851.13	gi|345006193|ref|YP_004809046.1|	-	0.097	11.9	8.1	3	7.0	5.9	2.0	2	0	0	2	2	2	0	TMPIT-like	protein
Tektin	PF03148.14	gi|345006193|ref|YP_004809046.1|	-	0.1	11.3	15.7	0.28	9.9	1.3	2.1	2	0	0	2	2	2	0	Tektin	family
TBCC_N	PF16752.5	gi|345006193|ref|YP_004809046.1|	-	0.11	13.0	11.4	0.69	10.4	0.6	2.2	2	0	0	2	2	2	0	Tubulin-specific	chaperone	C	N-terminal	domain
DUF641	PF04859.12	gi|345006193|ref|YP_004809046.1|	-	0.13	12.6	9.1	0.46	10.8	0.8	2.2	2	0	0	2	2	2	0	Plant	protein	of	unknown	function	(DUF641)
DUF4407	PF14362.6	gi|345006193|ref|YP_004809046.1|	-	0.13	11.6	19.3	0.087	12.2	3.3	2.0	1	1	0	2	2	2	0	Domain	of	unknown	function	(DUF4407)
SKA2	PF16740.5	gi|345006193|ref|YP_004809046.1|	-	0.15	11.9	12.4	0.45	10.3	6.2	2.2	2	0	0	2	2	2	0	Spindle	and	kinetochore-associated	protein	2
HAUS-augmin3	PF14932.6	gi|345006193|ref|YP_004809046.1|	-	0.15	11.6	12.3	0.87	9.1	1.7	2.1	2	0	0	2	2	2	0	HAUS	augmin-like	complex	subunit	3
DUF2203	PF09969.9	gi|345006193|ref|YP_004809046.1|	-	0.16	12.7	6.5	4.1	8.1	0.9	2.3	2	0	0	2	2	2	0	Uncharacterized	conserved	protein	(DUF2203)
Filament	PF00038.21	gi|345006193|ref|YP_004809046.1|	-	0.23	11.0	18.6	0.066	12.8	1.9	2.1	2	0	0	2	2	2	0	Intermediate	filament	protein
DivIVA	PF05103.13	gi|345006193|ref|YP_004809046.1|	-	0.24	11.5	12.6	0.35	11.0	2.4	2.1	2	0	0	2	2	2	0	DivIVA	protein
Phage_GPO	PF05929.11	gi|345006193|ref|YP_004809046.1|	-	0.26	10.9	10.3	0.3	10.7	3.4	2.0	2	0	0	2	2	2	0	Phage	capsid	scaffolding	protein	(GPO)	serine	peptidase
KfrA_N	PF11740.8	gi|345006193|ref|YP_004809046.1|	-	0.26	12.0	20.8	0.48	11.1	5.8	2.6	2	1	0	2	2	2	0	Plasmid	replication	region	DNA-binding	N-term
CENP-H	PF05837.12	gi|345006193|ref|YP_004809046.1|	-	0.27	11.7	13.0	0.88	10.0	5.4	2.2	2	0	0	2	2	2	0	Centromere	protein	H	(CENP-H)
COG2	PF06148.11	gi|345006193|ref|YP_004809046.1|	-	0.29	11.2	11.7	1.5	8.9	0.4	2.2	2	0	0	2	2	2	0	COG	(conserved	oligomeric	Golgi)	complex	component,	COG2
MtrG	PF04210.13	gi|345006193|ref|YP_004809046.1|	-	0.31	10.9	4.4	2	8.3	1.2	2.6	2	1	0	2	2	2	0	Tetrahydromethanopterin	S-methyltransferase,	subunit	G
DUF4337	PF14235.6	gi|345006193|ref|YP_004809046.1|	-	0.33	11.0	13.6	0.17	12.0	5.7	2.1	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4337)
Atg14	PF10186.9	gi|345006193|ref|YP_004809046.1|	-	0.33	10.0	13.8	1.1	8.2	0.8	2.0	2	0	0	2	2	2	0	Vacuolar	sorting	38	and	autophagy-related	subunit	14
AAA_13	PF13166.6	gi|345006193|ref|YP_004809046.1|	-	0.34	9.5	14.3	3.6	6.1	14.3	1.9	1	1	0	1	1	1	0	AAA	domain
ABC_tran_CTD	PF16326.5	gi|345006193|ref|YP_004809046.1|	-	0.35	11.1	28.5	0.6	10.4	7.3	3.4	2	2	0	2	2	2	0	ABC	transporter	C-terminal	domain
TPR_MLP1_2	PF07926.12	gi|345006193|ref|YP_004809046.1|	-	0.37	10.8	21.4	2.2	8.4	10.8	2.3	2	0	0	2	2	2	0	TPR/MLP1/MLP2-like	protein
Spc24	PF08286.11	gi|345006193|ref|YP_004809046.1|	-	0.46	10.8	16.7	1	9.7	1.4	2.3	2	1	0	2	2	2	0	Spc24	subunit	of	Ndc80
Baculo_PEP_C	PF04513.12	gi|345006193|ref|YP_004809046.1|	-	0.47	10.5	8.8	5.2	7.1	2.7	2.1	2	0	0	2	2	2	0	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
FemAB	PF02388.16	gi|345006193|ref|YP_004809046.1|	-	0.47	9.3	6.7	2.2	7.1	0.1	2.0	2	0	0	2	2	2	0	FemAB	family
DHR10	PF18595.1	gi|345006193|ref|YP_004809046.1|	-	0.53	10.4	20.9	2	8.5	10.5	2.4	2	1	0	2	2	2	0	Designed	helical	repeat	protein	10	domain
GrpE	PF01025.19	gi|345006193|ref|YP_004809046.1|	-	0.55	9.9	15.6	1.1	8.9	1.6	2.2	2	0	0	2	2	2	0	GrpE
DUF1664	PF07889.12	gi|345006193|ref|YP_004809046.1|	-	0.59	10.2	17.4	2.3	8.3	8.0	2.2	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1664)
DUF2730	PF10805.8	gi|345006193|ref|YP_004809046.1|	-	0.59	10.3	7.7	6.5	6.9	1.6	2.5	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF2730)
Laminin_II	PF06009.12	gi|345006193|ref|YP_004809046.1|	-	0.64	10.0	10.4	1.7	8.7	0.5	2.1	2	0	0	2	2	2	0	Laminin	Domain	II
Seryl_tRNA_N	PF02403.22	gi|345006193|ref|YP_004809046.1|	-	0.71	10.1	12.6	1.6	9.0	1.5	2.4	2	0	0	2	2	2	0	Seryl-tRNA	synthetase	N-terminal	domain
Ax_dynein_light	PF10211.9	gi|345006193|ref|YP_004809046.1|	-	0.77	9.7	15.7	0.83	9.6	7.0	2.1	2	0	0	2	2	2	0	Axonemal	dynein	light	chain
Occludin_ELL	PF07303.13	gi|345006193|ref|YP_004809046.1|	-	0.91	10.3	8.9	5.1	7.9	3.6	2.2	2	0	0	2	2	2	0	Occludin	homology	domain
PEARLI-4	PF05278.12	gi|345006193|ref|YP_004809046.1|	-	0.92	9.0	9.2	4.2	6.9	0.7	2.3	2	1	0	2	2	2	0	Arabidopsis	phospholipase-like	protein	(PEARLI	4)
HCMV_UL139	PF12507.8	gi|345006193|ref|YP_004809046.1|	-	0.98	9.8	7.1	0.56	10.6	1.6	2.3	2	0	0	2	2	2	0	Human	Cytomegalovirus	UL139	protein
DUF4618	PF15397.6	gi|345006193|ref|YP_004809046.1|	-	1	8.7	15.4	1.5	8.2	1.5	2.2	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4618)
Paralemmin	PF03285.15	gi|345006193|ref|YP_004809046.1|	-	1.1	8.7	13.6	0.035	13.7	3.8	2.0	2	0	0	2	2	2	0	Paralemmin
Remorin_C	PF03763.13	gi|345006193|ref|YP_004809046.1|	-	1.2	9.0	11.4	1.4	8.9	3.8	2.2	2	0	0	2	2	2	0	Remorin,	C-terminal	region
DUF4200	PF13863.6	gi|345006193|ref|YP_004809046.1|	-	1.4	9.3	19.0	4.7	7.6	3.7	2.2	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4200)
V-ATPase_G_2	PF16999.5	gi|345006193|ref|YP_004809046.1|	-	1.4	9.3	17.7	0.9	10.0	6.7	2.3	2	0	0	2	2	2	0	Vacuolar	(H+)-ATPase	G	subunit
Hemagglutinin	PF00509.18	gi|345006193|ref|YP_004809046.1|	-	1.5	7.2	5.1	6.5	5.0	0.4	2.0	2	0	0	2	2	2	0	Haemagglutinin
PspA_IM30	PF04012.12	gi|345006193|ref|YP_004809046.1|	-	1.6	8.2	22.2	2.8	7.4	10.1	2.1	2	0	0	2	2	2	0	PspA/IM30	family
CCDC-167	PF15188.6	gi|345006193|ref|YP_004809046.1|	-	1.7	9.0	15.8	0.26	11.6	1.7	2.9	3	1	0	3	3	2	0	Coiled-coil	domain-containing	protein	167
Cep57_CLD_2	PF14197.6	gi|345006193|ref|YP_004809046.1|	-	1.9	8.6	12.5	6.6	6.9	1.6	2.4	2	1	0	2	2	2	0	Centrosome	localisation	domain	of	PPC89
SlyX	PF04102.12	gi|345006193|ref|YP_004809046.1|	-	2	9.1	24.7	5.7	7.6	5.1	2.6	2	0	0	2	2	2	0	SlyX
Goodbye	PF17109.5	gi|345006193|ref|YP_004809046.1|	-	2	8.9	8.6	0.76	10.2	0.5	2.3	2	1	0	2	2	2	0	fungal	STAND	N-terminal	Goodbye	domain
DUF4140	PF13600.6	gi|345006193|ref|YP_004809046.1|	-	2.1	8.9	18.6	1.3	9.5	3.5	3.0	2	1	0	2	2	2	0	N-terminal	domain	of	unknown	function	(DUF4140)
FliD_C	PF07195.12	gi|345006193|ref|YP_004809046.1|	-	2.2	7.7	12.6	0.16	11.3	4.5	2.0	2	0	0	2	2	2	0	Flagellar	hook-associated	protein	2	C-terminus
HrpB7	PF09486.10	gi|345006193|ref|YP_004809046.1|	-	2.2	8.6	19.9	0.44	10.9	2.9	2.5	2	1	0	2	2	2	0	Bacterial	type	III	secretion	protein	(HrpB7)
Med4	PF10018.9	gi|345006193|ref|YP_004809046.1|	-	2.4	7.8	15.1	3	7.5	2.5	2.2	2	0	0	2	2	2	0	Vitamin-D-receptor	interacting	Mediator	subunit	4
NPV_P10	PF05531.12	gi|345006193|ref|YP_004809046.1|	-	2.4	8.7	17.7	3.1	8.3	6.2	2.6	2	1	0	2	2	2	0	Nucleopolyhedrovirus	P10	protein
FAD-SLDH	PF12318.8	gi|345006193|ref|YP_004809046.1|	-	2.4	8.2	7.2	0.45	10.6	1.8	2.0	2	0	0	2	2	2	0	Membrane	bound	FAD	containing	D-sorbitol	dehydrogenase
DUF4446	PF14584.6	gi|345006193|ref|YP_004809046.1|	-	2.8	7.9	11.0	3.8	7.5	4.0	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF4446)
ATP-synt_E	PF05680.12	gi|345006193|ref|YP_004809046.1|	-	3.1	8.2	11.0	0.8	10.1	0.2	2.3	2	1	0	2	2	2	0	ATP	synthase	E	chain
bZIP_1	PF00170.21	gi|345006193|ref|YP_004809046.1|	-	3.1	8.0	10.8	3.9	7.6	1.7	2.7	2	1	0	2	2	2	0	bZIP	transcription	factor
Uds1	PF15456.6	gi|345006193|ref|YP_004809046.1|	-	3.2	7.9	10.8	5.7	7.1	0.6	2.6	2	1	0	2	2	2	0	Up-regulated	During	Septation
Mt_ATP-synt_D	PF05873.12	gi|345006193|ref|YP_004809046.1|	-	3.4	7.5	10.1	3.7	7.4	0.5	2.2	2	0	0	2	2	2	0	ATP	synthase	D	chain,	mitochondrial	(ATP5H)
USP8_interact	PF08941.10	gi|345006193|ref|YP_004809046.1|	-	3.5	7.4	11.8	1.4	8.7	0.5	2.2	2	0	0	2	2	2	0	USP8	interacting
XhlA	PF10779.9	gi|345006193|ref|YP_004809046.1|	-	3.7	7.8	10.9	1.2	9.4	2.3	2.8	2	1	0	2	2	2	0	Haemolysin	XhlA
Cep57_MT_bd	PF06657.13	gi|345006193|ref|YP_004809046.1|	-	3.8	8.0	18.6	5.3	7.6	6.9	2.7	2	1	1	3	3	3	0	Centrosome	microtubule-binding	domain	of	Cep57
Med21	PF11221.8	gi|345006193|ref|YP_004809046.1|	-	4	7.7	20.3	0.2	11.9	3.8	2.9	2	1	1	3	3	3	0	Subunit	21	of	Mediator	complex
Muted	PF14942.6	gi|345006193|ref|YP_004809046.1|	-	4	7.8	15.6	8.1	6.8	6.6	2.1	2	0	0	2	2	2	0	Organelle	biogenesis,	Muted-like	protein
Tropomyosin_1	PF12718.7	gi|345006193|ref|YP_004809046.1|	-	4.1	7.6	21.4	4.2	7.5	4.6	2.3	2	0	0	2	2	2	0	Tropomyosin	like
CENP-Q	PF13094.6	gi|345006193|ref|YP_004809046.1|	-	5.6	7.1	15.0	2	8.6	5.0	2.1	2	0	0	2	2	2	0	CENP-Q,	a	CENPA-CAD	centromere	complex	subunit
Sec34	PF04136.15	gi|345006193|ref|YP_004809046.1|	-	6.5	6.6	12.0	5.4	6.9	3.8	2.1	2	0	0	2	2	2	0	Sec34-like	family
Tho2	PF11262.8	gi|345006193|ref|YP_004809046.1|	-	6.6	5.8	7.5	0.9	8.7	0.8	1.9	2	0	0	2	2	2	0	Transcription	factor/nuclear	export	subunit	protein	2
HAUS5	PF14817.6	gi|345006193|ref|YP_004809046.1|	-	6.9	5.3	17.8	4.6	5.9	5.5	2.0	2	0	0	2	2	2	0	HAUS	augmin-like	complex	subunit	5
PRKG1_interact	PF15898.5	gi|345006193|ref|YP_004809046.1|	-	7.3	7.5	14.3	9.3	7.2	1.4	2.2	2	0	0	2	2	2	0	cGMP-dependent	protein	kinase	interacting	domain
HAUS6_N	PF14661.6	gi|345006193|ref|YP_004809046.1|	-	7.4	6.1	14.2	10	5.6	6.6	2.1	2	0	0	2	2	2	0	HAUS	augmin-like	complex	subunit	6	N-terminus
DUF724	PF05266.14	gi|345006193|ref|YP_004809046.1|	-	7.5	6.3	16.4	6.2	6.6	6.9	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF724)
GPS2_interact	PF15784.5	gi|345006193|ref|YP_004809046.1|	-	7.5	7.1	16.2	2	8.9	5.2	2.3	2	0	0	2	2	2	0	G-protein	pathway	suppressor	2-interacting	domain
5_nucleotid	PF05761.14	gi|345006193|ref|YP_004809046.1|	-	7.5	5.3	9.2	3.8	6.3	3.9	2.0	2	0	0	2	2	2	0	5'	nucleotidase	family
FmiP_Thoc5	PF09766.9	gi|345006193|ref|YP_004809046.1|	-	7.7	5.7	13.6	6.6	5.9	1.7	2.0	2	0	0	2	2	2	0	Fms-interacting	protein/Thoc5
ORF6C	PF10552.9	gi|345006193|ref|YP_004809046.1|	-	7.8	6.6	10.3	5.7	7.1	0.6	2.3	2	0	0	2	2	2	0	ORF6C	domain
DUF2681	PF10883.8	gi|345006193|ref|YP_004809046.1|	-	8.1	6.9	21.0	1.4	9.4	3.9	2.3	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2681)
Herpes_UL6	PF01763.16	gi|345006193|ref|YP_004809046.1|	-	8.9	4.7	10.5	0.77	8.2	4.0	1.9	1	1	1	2	2	2	0	Herpesvirus	UL6	like
DUF948	PF06103.11	gi|345006193|ref|YP_004809046.1|	-	9.1	6.6	10.1	9.5	6.6	2.0	2.3	2	0	0	2	2	2	0	Bacterial	protein	of	unknown	function	(DUF948)
MCU	PF04678.13	gi|345006193|ref|YP_004809046.1|	-	9.1	6.3	11.5	0.74	9.9	1.4	2.2	1	1	1	2	2	2	0	Mitochondrial	calcium	uniporter
Ribosomal_L18A	PF01775.17	gi|345006194|ref|YP_004809047.1|	-	6.2e-08	32.8	0.0	7.4e-08	32.5	0.0	1.1	1	0	0	1	1	1	1	Ribosomal	proteins	50S-L18Ae/60S-L20/60S-L18A
ABC2_membrane	PF01061.24	gi|345006195|ref|YP_004809048.1|	-	0.0013	18.2	0.4	0.0013	18.2	0.4	1.6	2	0	0	2	2	2	1	ABC-2	type	transporter
G3P_antiterm	PF04309.12	gi|345006195|ref|YP_004809048.1|	-	0.027	13.9	0.0	0.047	13.1	0.0	1.4	1	1	0	1	1	1	0	Glycerol-3-phosphate	responsive	antiterminator
ABC2_membrane_3	PF12698.7	gi|345006195|ref|YP_004809048.1|	-	0.032	13.4	1.9	0.086	11.9	2.0	1.6	1	1	0	1	1	1	0	ABC-2	family	transporter	protein
ABC2_membrane_2	PF12679.7	gi|345006195|ref|YP_004809048.1|	-	0.12	11.7	6.5	0.19	11.0	6.5	1.5	1	1	0	1	1	1	0	ABC-2	family	transporter	protein
eIF-6	PF01912.18	gi|345006196|ref|YP_004809049.1|	-	6.6e-68	228.0	0.1	7.9e-68	227.7	0.1	1.1	1	0	0	1	1	1	1	eIF-6	family
Ribosomal_L31e	PF01198.19	gi|345006197|ref|YP_004809050.1|	-	2.4e-10	40.5	0.1	3.1e-10	40.2	0.1	1.1	1	0	0	1	1	1	1	Ribosomal	protein	L31e
Rap1a	PF18602.1	gi|345006197|ref|YP_004809050.1|	-	0.15	12.4	0.1	6.5	7.1	0.0	2.1	2	0	0	2	2	2	0	Rap1a	immunity	proteins
Ribosomal_L39	PF00832.20	gi|345006198|ref|YP_004809051.1|	-	5.8e-22	77.1	6.5	6.9e-22	76.8	6.5	1.1	1	0	0	1	1	1	1	Ribosomal	L39	protein
TrmB	PF01978.19	gi|345006200|ref|YP_004809053.1|	-	6.3e-15	54.8	0.1	9.2e-15	54.3	0.1	1.3	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
MarR_2	PF12802.7	gi|345006200|ref|YP_004809053.1|	-	3.7e-07	29.9	0.2	5.7e-07	29.3	0.2	1.3	1	0	0	1	1	1	1	MarR	family
MarR	PF01047.22	gi|345006200|ref|YP_004809053.1|	-	1.6e-06	28.0	0.1	2.8e-06	27.2	0.1	1.4	1	0	0	1	1	1	1	MarR	family
HTH_24	PF13412.6	gi|345006200|ref|YP_004809053.1|	-	0.0017	17.9	0.0	0.0024	17.4	0.0	1.3	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_IclR	PF09339.10	gi|345006200|ref|YP_004809053.1|	-	0.0018	18.0	0.2	0.0031	17.3	0.2	1.4	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
Phage_rep_org_N	PF09681.10	gi|345006200|ref|YP_004809053.1|	-	0.0022	17.9	0.0	0.066	13.1	0.0	2.2	1	1	1	2	2	2	1	N-terminal	phage	replisome	organiser	(Phage_rep_org_N)
HTH_Crp_2	PF13545.6	gi|345006200|ref|YP_004809053.1|	-	0.004	17.1	0.1	0.0054	16.7	0.1	1.2	1	0	0	1	1	1	1	Crp-like	helix-turn-helix	domain
HTH_5	PF01022.20	gi|345006200|ref|YP_004809053.1|	-	0.005	16.7	0.1	0.0079	16.0	0.1	1.3	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_20	PF12840.7	gi|345006200|ref|YP_004809053.1|	-	0.01	15.8	0.7	0.018	15.1	0.7	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain
GntR	PF00392.21	gi|345006200|ref|YP_004809053.1|	-	0.016	14.9	1.7	0.028	14.0	1.7	1.3	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	gntR	family
HTH_27	PF13463.6	gi|345006200|ref|YP_004809053.1|	-	0.032	14.7	0.1	0.081	13.4	0.1	1.7	2	0	0	2	2	2	0	Winged	helix	DNA-binding	domain
TFIIE_alpha	PF02002.17	gi|345006200|ref|YP_004809053.1|	-	0.057	13.3	0.0	0.067	13.1	0.0	1.1	1	0	0	1	1	1	0	TFIIE	alpha	subunit
PALP	PF00291.25	gi|345006201|ref|YP_004809054.1|	-	3.6e-69	233.4	6.2	4.2e-69	233.2	6.2	1.0	1	0	0	1	1	1	1	Pyridoxal-phosphate	dependent	enzyme
C1_2	PF03107.16	gi|345006201|ref|YP_004809054.1|	-	0.12	12.7	1.5	0.22	11.9	1.5	1.4	1	0	0	1	1	1	0	C1	domain
Tubulin	PF00091.25	gi|345006203|ref|YP_004809056.1|	-	2.9e-36	125.5	4.3	3.6e-36	125.2	3.1	1.8	2	1	0	2	2	2	1	Tubulin/FtsZ	family,	GTPase	domain
FtsZ_C	PF12327.8	gi|345006203|ref|YP_004809056.1|	-	1.3e-35	121.5	4.5	1.8e-35	121.1	0.6	3.0	2	1	1	3	3	3	1	FtsZ	family,	C-terminal	domain
AA_kinase	PF00696.28	gi|345006203|ref|YP_004809056.1|	-	0.01	15.5	1.0	0.028	14.0	1.0	1.7	1	1	0	1	1	1	1	Amino	acid	kinase	family
ThiF	PF00899.21	gi|345006203|ref|YP_004809056.1|	-	0.063	12.6	0.2	0.21	10.9	0.1	1.9	1	1	1	2	2	2	0	ThiF	family
Csm1_B	PF18211.1	gi|345006203|ref|YP_004809056.1|	-	0.071	13.0	0.0	0.23	11.3	0.0	1.8	1	0	0	1	1	1	0	Csm1	subunit	domain	B
ZT_dimer	PF16916.5	gi|345006203|ref|YP_004809056.1|	-	0.12	12.5	0.0	0.34	11.1	0.0	1.7	1	0	0	1	1	1	0	Dimerisation	domain	of	Zinc	Transporter
FtsZ_C	PF12327.8	gi|345006204|ref|YP_004809057.1|	-	1.1e-35	121.7	0.8	2.7e-35	120.6	0.8	1.6	1	0	0	1	1	1	1	FtsZ	family,	C-terminal	domain
ThiF	PF00899.21	gi|345006204|ref|YP_004809057.1|	-	0.012	15.0	0.2	0.11	11.8	0.0	2.2	1	1	1	2	2	2	0	ThiF	family
ZT_dimer	PF16916.5	gi|345006204|ref|YP_004809057.1|	-	0.019	15.1	0.0	0.043	13.9	0.0	1.5	1	0	0	1	1	1	0	Dimerisation	domain	of	Zinc	Transporter
Tubulin	PF00091.25	gi|345006204|ref|YP_004809057.1|	-	0.12	12.5	1.8	0.21	11.8	1.4	1.8	1	1	0	1	1	1	0	Tubulin/FtsZ	family,	GTPase	domain
RHH_1	PF01402.21	gi|345006205|ref|YP_004809058.1|	-	7.1e-11	41.6	0.3	8.2e-11	41.4	0.3	1.1	1	0	0	1	1	1	1	Ribbon-helix-helix	protein,	copG	family
RHH_8	PF17723.1	gi|345006205|ref|YP_004809058.1|	-	1.3e-05	25.3	0.0	1.4e-05	25.3	0.0	1.0	1	0	0	1	1	1	1	Ribbon-Helix-Helix	transcriptional	regulator	family
ParD_antitoxin	PF03693.14	gi|345006205|ref|YP_004809058.1|	-	0.043	14.2	0.0	0.046	14.1	0.0	1.1	1	0	0	1	1	1	0	Bacterial	antitoxin	of	ParD	toxin-antitoxin	type	II	system	and	RHH
zinc_ribbon_2	PF13240.6	gi|345006206|ref|YP_004809059.1|	-	2.5e-10	39.7	10.5	3.8e-06	26.4	4.3	2.5	2	0	0	2	2	2	2	zinc-ribbon	domain
zinc_ribbon_15	PF17032.5	gi|345006206|ref|YP_004809059.1|	-	1.3e-07	32.3	7.7	9.2e-05	23.1	0.4	2.1	2	0	0	2	2	2	2	zinc-ribbon	family
DZR	PF12773.7	gi|345006206|ref|YP_004809059.1|	-	2.3e-07	30.7	15.4	3.5e-07	30.1	15.4	1.3	1	0	0	1	1	1	1	Double	zinc	ribbon
zf-ribbon_3	PF13248.6	gi|345006206|ref|YP_004809059.1|	-	6.4e-06	25.4	15.5	0.0015	17.9	5.4	2.5	2	0	0	2	2	2	2	zinc-ribbon	domain
RHH_1	PF01402.21	gi|345006206|ref|YP_004809059.1|	-	7.5e-05	22.5	2.1	7.5e-05	22.5	2.1	2.9	3	1	0	3	3	3	1	Ribbon-helix-helix	protein,	copG	family
PolC_DP2	PF03833.13	gi|345006206|ref|YP_004809059.1|	-	0.0033	15.4	2.1	0.0038	15.2	2.1	1.1	1	0	0	1	1	1	1	DNA	polymerase	II	large	subunit	DP2
DUF2321	PF10083.9	gi|345006206|ref|YP_004809059.1|	-	0.013	15.1	5.0	0.2	11.3	3.2	2.1	2	0	0	2	2	2	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2321)
HypA	PF01155.19	gi|345006206|ref|YP_004809059.1|	-	0.018	15.0	1.6	0.018	15.0	1.6	2.2	1	1	1	2	2	2	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
VapB_antitoxin	PF09957.9	gi|345006206|ref|YP_004809059.1|	-	0.057	13.3	0.1	0.17	11.8	0.0	1.7	2	0	0	2	2	2	0	Bacterial	antitoxin	of	type	II	TA	system,	VapB
zinc-ribbons_6	PF07191.12	gi|345006206|ref|YP_004809059.1|	-	0.1	12.6	12.4	0.88	9.6	9.8	2.1	1	1	1	2	2	2	0	zinc-ribbons
NMD3	PF04981.13	gi|345006206|ref|YP_004809059.1|	-	0.13	11.7	7.2	0.19	11.1	7.2	1.2	1	0	0	1	1	1	0	NMD3	family
zf_UBZ	PF18439.1	gi|345006206|ref|YP_004809059.1|	-	0.54	9.9	7.4	6.7	6.4	0.1	3.4	3	1	1	4	4	4	0	Ubiquitin-Binding	Zinc	Finger
NOB1_Zn_bind	PF08772.11	gi|345006206|ref|YP_004809059.1|	-	2.5	8.4	11.2	8.4	6.6	4.6	2.5	1	1	1	2	2	2	0	Nin	one	binding	(NOB1)	Zn-ribbon	like
Nudix_N_2	PF14803.6	gi|345006206|ref|YP_004809059.1|	-	2.6	8.0	15.4	5.1	7.1	1.2	3.8	3	1	1	4	4	4	0	Nudix	N-terminal
zf-NADH-PPase	PF09297.11	gi|345006206|ref|YP_004809059.1|	-	8	6.2	15.0	1.9	8.2	0.7	3.4	3	0	0	3	3	3	0	NADH	pyrophosphatase	zinc	ribbon	domain
zf-ISL3	PF14690.6	gi|345006206|ref|YP_004809059.1|	-	9.4	7.0	11.0	14	6.4	0.1	3.2	3	1	0	3	3	3	0	zinc-finger	of	transposase	IS204/IS1001/IS1096/IS1165
eIF-5_eIF-2B	PF01873.17	gi|345006207|ref|YP_004809060.1|	-	4.1e-31	107.3	0.0	6.6e-31	106.6	0.0	1.3	1	0	0	1	1	1	1	Domain	found	in	IF2B/IF5
TRAM	PF01938.20	gi|345006207|ref|YP_004809060.1|	-	7.3e-08	32.3	0.7	1.3e-07	31.5	0.7	1.4	1	0	0	1	1	1	1	TRAM	domain
DNA_RNApol_7kD	PF03604.13	gi|345006207|ref|YP_004809060.1|	-	0.027	14.2	0.4	2.1	8.1	0.0	2.4	2	0	0	2	2	2	0	DNA	directed	RNA	polymerase,	7	kDa	subunit
zf-ribbon_3	PF13248.6	gi|345006207|ref|YP_004809060.1|	-	0.1	12.0	0.3	7.8	6.1	0.1	2.3	2	0	0	2	2	2	0	zinc-ribbon	domain
zinc_ribbon_5	PF13719.6	gi|345006207|ref|YP_004809060.1|	-	0.14	11.9	0.3	14	5.5	0.1	2.3	2	0	0	2	2	2	0	zinc-ribbon	domain
Nudix_N_2	PF14803.6	gi|345006207|ref|YP_004809060.1|	-	0.16	11.9	1.6	0.35	10.8	0.9	1.9	2	0	0	2	2	2	0	Nudix	N-terminal
TF_Zn_Ribbon	PF08271.12	gi|345006207|ref|YP_004809060.1|	-	0.21	11.1	2.6	0.55	9.8	2.6	1.7	1	1	0	1	1	1	0	TFIIB	zinc-binding
HypA	PF01155.19	gi|345006207|ref|YP_004809060.1|	-	0.21	11.6	1.2	0.68	10.0	1.2	1.8	1	1	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
zinc_ribbon_4	PF13717.6	gi|345006207|ref|YP_004809060.1|	-	0.38	10.7	3.1	8.9	6.3	3.1	2.3	1	1	0	1	1	1	0	zinc-ribbon	domain
zf-NADH-PPase	PF09297.11	gi|345006207|ref|YP_004809060.1|	-	0.97	9.1	3.2	5.8	6.7	3.2	2.2	1	1	0	1	1	1	0	NADH	pyrophosphatase	zinc	ribbon	domain
zf-CCHC_6	PF15288.6	gi|345006207|ref|YP_004809060.1|	-	1.6	8.6	4.4	1.9	8.4	0.6	2.3	2	0	0	2	2	2	0	Zinc	knuckle
E1-E2_ATPase	PF00122.20	gi|345006208|ref|YP_004809061.1|	-	1.3e-54	184.5	0.4	2.7e-54	183.5	0.4	1.6	1	0	0	1	1	1	1	E1-E2	ATPase
Hydrolase	PF00702.26	gi|345006208|ref|YP_004809061.1|	-	2.1e-42	145.8	7.3	2.8e-42	145.4	6.2	1.8	2	0	0	2	2	2	1	haloacid	dehalogenase-like	hydrolase
HMA	PF00403.26	gi|345006208|ref|YP_004809061.1|	-	8.9e-34	115.7	2.2	6.1e-16	58.6	0.0	3.9	5	0	0	5	5	5	2	Heavy-metal-associated	domain
Hydrolase_3	PF08282.12	gi|345006208|ref|YP_004809061.1|	-	0.0034	17.1	0.7	0.011	15.5	0.5	1.7	1	1	1	2	2	2	1	haloacid	dehalogenase-like	hydrolase
HAD	PF12710.7	gi|345006208|ref|YP_004809061.1|	-	0.0038	17.7	0.3	0.014	15.8	0.3	2.0	1	1	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
SMG1_N	PF17229.2	gi|345006208|ref|YP_004809061.1|	-	0.17	12.6	0.3	8.5	7.2	0.0	2.8	2	0	0	2	2	2	0	Serine/threonine-protein	kinase	SMG1	N-terminal
Peptidase_M24	PF00557.24	gi|345006209|ref|YP_004809062.1|	-	2e-37	128.9	0.2	2.6e-37	128.6	0.2	1.2	1	0	0	1	1	1	1	Metallopeptidase	family	M24
Creatinase_N	PF01321.18	gi|345006209|ref|YP_004809062.1|	-	2.8e-07	31.3	0.0	5e-07	30.4	0.0	1.5	1	0	0	1	1	1	1	Creatinase/Prolidase	N-terminal	domain
AstE_AspA	PF04952.14	gi|345006210|ref|YP_004809063.1|	-	1.3e-51	175.4	0.0	1.5e-51	175.2	0.0	1.0	1	0	0	1	1	1	1	Succinylglutamate	desuccinylase	/	Aspartoacylase	family
PALP	PF00291.25	gi|345006211|ref|YP_004809064.1|	-	5.5e-58	196.7	4.4	6.4e-58	196.5	4.4	1.0	1	0	0	1	1	1	1	Pyridoxal-phosphate	dependent	enzyme
Zn-ribbon_8	PF09723.10	gi|345006211|ref|YP_004809064.1|	-	0.64	10.2	2.0	1.8	8.8	0.4	2.2	1	1	1	2	2	2	0	Zinc	ribbon	domain
DUF1743	PF08489.11	gi|345006213|ref|YP_004809066.1|	-	5.1e-35	120.0	0.0	7.8e-35	119.4	0.0	1.3	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1743)
C1_1	PF00130.22	gi|345006213|ref|YP_004809066.1|	-	0.19	11.7	1.1	0.36	10.7	1.1	1.4	1	0	0	1	1	1	0	Phorbol	esters/diacylglycerol	binding	domain	(C1	domain)
HTH_3	PF01381.22	gi|345006214|ref|YP_004809067.1|	-	1.8e-08	34.3	0.0	2.9e-08	33.6	0.0	1.4	1	0	0	1	1	1	1	Helix-turn-helix
HTH_19	PF12844.7	gi|345006214|ref|YP_004809067.1|	-	1.9e-05	24.6	0.0	3.5e-05	23.7	0.0	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_31	PF13560.6	gi|345006214|ref|YP_004809067.1|	-	7.8e-05	22.9	0.0	0.00018	21.8	0.0	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_11	PF08279.12	gi|345006214|ref|YP_004809067.1|	-	0.00028	20.7	0.0	0.00071	19.5	0.0	1.6	1	0	0	1	1	1	1	HTH	domain
Sigma70_r4	PF04545.16	gi|345006214|ref|YP_004809067.1|	-	0.0035	16.8	0.0	0.0085	15.6	0.0	1.6	1	0	0	1	1	1	1	Sigma-70,	region	4
HTH_25	PF13413.6	gi|345006214|ref|YP_004809067.1|	-	0.011	15.6	0.0	0.021	14.7	0.0	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_23	PF13384.6	gi|345006214|ref|YP_004809067.1|	-	0.013	15.2	0.1	0.046	13.5	0.0	1.9	2	0	0	2	2	2	0	Homeodomain-like	domain
YdaS_antitoxin	PF15943.5	gi|345006214|ref|YP_004809067.1|	-	0.08	12.8	0.0	0.28	11.1	0.0	1.8	2	0	0	2	2	2	0	Putative	antitoxin	of	bacterial	toxin-antitoxin	system,	YdaS/YdaT
HTH_28	PF13518.6	gi|345006214|ref|YP_004809067.1|	-	0.13	12.4	0.0	0.33	11.1	0.0	1.7	1	0	0	1	1	1	0	Helix-turn-helix	domain
GST_N_3	PF13417.6	gi|345006215|ref|YP_004809068.1|	-	1.9e-15	57.0	0.0	2.1e-15	56.9	0.0	1.0	1	0	0	1	1	1	1	Glutathione	S-transferase,	N-terminal	domain
Glutaredoxin	PF00462.24	gi|345006215|ref|YP_004809068.1|	-	9.5e-14	51.4	0.2	8e-13	48.4	0.0	1.9	1	1	1	2	2	2	1	Glutaredoxin
GST_N_2	PF13409.6	gi|345006215|ref|YP_004809068.1|	-	8.1e-10	38.9	0.0	9.4e-10	38.7	0.0	1.1	1	0	0	1	1	1	1	Glutathione	S-transferase,	N-terminal	domain
DUF836	PF05768.14	gi|345006215|ref|YP_004809068.1|	-	0.0064	16.9	0.2	0.0087	16.4	0.2	1.6	1	1	0	1	1	1	1	Glutaredoxin-like	domain	(DUF836)
Thioredoxin_4	PF13462.6	gi|345006215|ref|YP_004809068.1|	-	0.077	13.2	0.1	0.45	10.7	0.0	1.8	1	1	0	2	2	2	0	Thioredoxin
GST_N	PF02798.20	gi|345006215|ref|YP_004809068.1|	-	0.12	12.7	0.0	0.18	12.2	0.0	1.3	1	1	0	1	1	1	0	Glutathione	S-transferase,	N-terminal	domain
Arylsulfotrans	PF05935.11	gi|345006216|ref|YP_004809069.1|	-	1.1e-09	37.7	9.8	4e-09	35.9	2.9	3.5	1	1	1	2	2	2	1	Arylsulfotransferase	(ASST)
Arylsulfotran_2	PF14269.6	gi|345006216|ref|YP_004809069.1|	-	5.6e-05	22.7	3.7	0.0014	18.0	3.2	2.7	1	1	0	1	1	1	1	Arylsulfotransferase	(ASST)
NHL	PF01436.21	gi|345006216|ref|YP_004809069.1|	-	0.012	15.6	0.9	10	6.4	0.1	3.3	2	0	0	2	2	2	0	NHL	repeat
Xan_ur_permease	PF00860.20	gi|345006217|ref|YP_004809070.1|	-	2.5e-36	125.2	42.4	3.5e-36	124.8	42.4	1.2	1	0	0	1	1	1	1	Permease	family
Pribosyltran	PF00156.27	gi|345006218|ref|YP_004809071.1|	-	1.6e-09	37.5	0.3	2.5e-09	36.8	0.3	1.3	1	0	0	1	1	1	1	Phosphoribosyl	transferase	domain
HTH_3	PF01381.22	gi|345006218|ref|YP_004809071.1|	-	0.015	15.3	0.0	0.033	14.3	0.0	1.5	1	0	0	1	1	1	0	Helix-turn-helix
PUA	PF01472.20	gi|345006218|ref|YP_004809071.1|	-	0.074	13.0	0.1	0.29	11.1	0.0	2.0	2	0	0	2	2	2	0	PUA	domain
Pribosyltran	PF00156.27	gi|345006219|ref|YP_004809072.1|	-	1.3e-12	47.5	0.4	1.7e-12	47.1	0.4	1.1	1	0	0	1	1	1	1	Phosphoribosyl	transferase	domain
UPRTase	PF14681.6	gi|345006219|ref|YP_004809072.1|	-	0.0015	18.0	0.0	0.002	17.6	0.0	1.2	1	0	0	1	1	1	1	Uracil	phosphoribosyltransferase
PRTase_2	PF15609.6	gi|345006219|ref|YP_004809072.1|	-	0.015	14.8	0.1	0.021	14.3	0.1	1.2	1	0	0	1	1	1	0	Phosphoribosyl	transferase
CarS-like	PF01864.17	gi|345006220|ref|YP_004809073.1|	-	4.1e-46	157.1	0.4	4.6e-46	157.0	0.4	1.0	1	0	0	1	1	1	1	CDP-archaeol	synthase
CTP_transf_1	PF01148.20	gi|345006220|ref|YP_004809073.1|	-	0.00015	21.6	1.6	0.0002	21.2	0.4	1.7	1	1	0	1	1	1	1	Cytidylyltransferase	family
DUF4229	PF14012.6	gi|345006220|ref|YP_004809073.1|	-	0.15	12.2	0.8	0.15	12.2	0.8	3.2	4	0	0	4	4	4	0	Protein	of	unknown	function	(DUF4229)
Gly-zipper_YMGG	PF13441.6	gi|345006220|ref|YP_004809073.1|	-	0.4	10.4	12.2	1	9.2	3.0	3.0	1	1	1	2	2	2	0	YMGG-like	Gly-zipper
EpuA	PF11772.8	gi|345006220|ref|YP_004809073.1|	-	2.8	7.7	7.2	2.6	7.8	0.2	3.3	4	0	0	4	4	4	0	DNA-directed	RNA	polymerase	subunit	beta
Prefoldin_2	PF01920.20	gi|345006221|ref|YP_004809074.1|	-	1e-24	86.5	18.1	1.1e-24	86.4	18.1	1.0	1	0	0	1	1	1	1	Prefoldin	subunit
ALIX_LYPXL_bnd	PF13949.6	gi|345006221|ref|YP_004809074.1|	-	0.0003	20.2	7.7	0.00035	20.0	7.7	1.0	1	0	0	1	1	1	1	ALIX	V-shaped	domain	binding	to	HIV
CLZ	PF16526.5	gi|345006221|ref|YP_004809074.1|	-	0.00042	20.6	11.4	0.00093	19.5	5.0	2.3	2	0	0	2	2	2	1	C-terminal	leucine	zipper	domain	of	cyclic	nucleotide-gated	channels
eIF3_subunit	PF08597.10	gi|345006221|ref|YP_004809074.1|	-	0.00048	20.1	10.1	0.0012	18.9	10.1	1.5	1	1	0	1	1	1	1	Translation	initiation	factor	eIF3	subunit
XhlA	PF10779.9	gi|345006221|ref|YP_004809074.1|	-	0.0016	18.6	1.2	0.0016	18.6	1.2	2.8	2	1	1	3	3	3	1	Haemolysin	XhlA
BRI3BP	PF14965.6	gi|345006221|ref|YP_004809074.1|	-	0.0026	17.3	0.1	0.0039	16.7	0.1	1.3	1	0	0	1	1	1	1	Negative	regulator	of	p53/TP53
Prefoldin	PF02996.17	gi|345006221|ref|YP_004809074.1|	-	0.0027	17.6	13.9	0.37	10.7	13.9	2.4	1	1	0	1	1	1	1	Prefoldin	subunit
WXG100	PF06013.12	gi|345006221|ref|YP_004809074.1|	-	0.011	15.9	8.2	0.056	13.7	0.4	2.6	2	1	1	3	3	3	0	Proteins	of	100	residues	with	WXG
ApoLp-III	PF07464.11	gi|345006221|ref|YP_004809074.1|	-	0.022	14.8	12.9	0.054	13.6	1.8	2.1	1	1	1	2	2	2	0	Apolipophorin-III	precursor	(apoLp-III)
BRE1	PF08647.11	gi|345006221|ref|YP_004809074.1|	-	0.024	14.7	7.9	0.081	13.0	0.8	2.3	2	0	0	2	2	2	0	BRE1	E3	ubiquitin	ligase
bZIP_1	PF00170.21	gi|345006221|ref|YP_004809074.1|	-	0.03	14.4	4.0	0.03	14.4	4.0	2.2	2	0	0	2	2	2	0	bZIP	transcription	factor
Sigma70_ner	PF04546.13	gi|345006221|ref|YP_004809074.1|	-	0.036	14.0	1.6	0.036	14.0	1.6	2.1	1	1	1	2	2	2	0	Sigma-70,	non-essential	region
DUF5082	PF16888.5	gi|345006221|ref|YP_004809074.1|	-	0.039	14.2	10.1	0.063	13.6	10.1	1.3	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF5082)
DUF3584	PF12128.8	gi|345006221|ref|YP_004809074.1|	-	0.059	10.9	8.4	0.072	10.6	8.4	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3584)
EzrA	PF06160.12	gi|345006221|ref|YP_004809074.1|	-	0.1	10.7	12.5	0.15	10.2	12.5	1.2	1	0	0	1	1	1	0	Septation	ring	formation	regulator,	EzrA
Tropomyosin_1	PF12718.7	gi|345006221|ref|YP_004809074.1|	-	0.14	12.3	18.6	0.7	10.0	18.5	1.8	1	1	0	1	1	1	0	Tropomyosin	like
PspA_IM30	PF04012.12	gi|345006221|ref|YP_004809074.1|	-	0.16	11.5	17.8	0.24	11.0	6.6	2.1	1	1	1	2	2	2	0	PspA/IM30	family
TPR_MLP1_2	PF07926.12	gi|345006221|ref|YP_004809074.1|	-	0.21	11.6	20.5	1.1	9.4	6.3	2.1	1	1	1	2	2	2	0	TPR/MLP1/MLP2-like	protein
HJURP_C	PF12347.8	gi|345006221|ref|YP_004809074.1|	-	0.22	11.6	0.7	0.53	10.4	0.1	2.0	2	0	0	2	2	1	0	Holliday	junction	regulator	protein	family	C-terminal	repeat
TSNAXIP1_N	PF15739.5	gi|345006221|ref|YP_004809074.1|	-	0.26	11.7	11.3	0.57	10.6	10.2	1.8	1	1	0	1	1	1	0	Translin-associated	factor	X-interacting	N-terminus
DUF1664	PF07889.12	gi|345006221|ref|YP_004809074.1|	-	0.26	11.3	6.7	0.2	11.7	3.9	1.9	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF1664)
DUF3450	PF11932.8	gi|345006221|ref|YP_004809074.1|	-	0.27	10.5	18.0	0.97	8.7	5.0	2.0	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF3450)
Spectrin	PF00435.21	gi|345006221|ref|YP_004809074.1|	-	0.29	11.6	12.4	0.25	11.9	9.6	2.1	1	1	0	1	1	1	0	Spectrin	repeat
MIEAP	PF16026.5	gi|345006221|ref|YP_004809074.1|	-	0.32	11.2	2.7	0.31	11.2	1.9	1.4	1	1	0	1	1	1	0	Mitochondria-eating	protein
DUF1759	PF03564.15	gi|345006221|ref|YP_004809074.1|	-	0.35	10.8	2.5	11	5.9	0.1	2.2	1	1	0	2	2	2	0	Protein	of	unknown	function	(DUF1759)
DUF4200	PF13863.6	gi|345006221|ref|YP_004809074.1|	-	0.35	11.3	15.1	1.3	9.4	1.7	2.1	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4200)
DUF4140	PF13600.6	gi|345006221|ref|YP_004809074.1|	-	0.41	11.1	11.4	1.6	9.2	1.9	2.2	2	0	0	2	2	2	0	N-terminal	domain	of	unknown	function	(DUF4140)
NPV_P10	PF05531.12	gi|345006221|ref|YP_004809074.1|	-	0.44	11.0	6.7	2.5	8.6	0.7	2.3	2	0	0	2	2	2	0	Nucleopolyhedrovirus	P10	protein
DUF4795	PF16043.5	gi|345006221|ref|YP_004809074.1|	-	0.49	10.0	14.8	5.2	6.6	15.1	1.9	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4795)
SlyX	PF04102.12	gi|345006221|ref|YP_004809074.1|	-	0.53	10.9	10.0	0.13	12.9	1.3	2.3	2	0	0	2	2	2	0	SlyX
YscO	PF07321.12	gi|345006221|ref|YP_004809074.1|	-	0.57	10.1	19.2	19	5.2	19.2	2.1	1	1	0	1	1	1	0	Type	III	secretion	protein	YscO
Sec8_exocyst	PF04048.14	gi|345006221|ref|YP_004809074.1|	-	0.72	9.7	5.4	1.4	8.8	1.2	2.1	1	1	1	2	2	2	0	Sec8	exocyst	complex	component	specific	domain
DUF5344	PF17279.2	gi|345006221|ref|YP_004809074.1|	-	0.76	10.4	10.2	0.79	10.3	1.4	2.4	1	1	2	3	3	3	0	Family	of	unknown	function	(DUF5344)
FlaC_arch	PF05377.11	gi|345006221|ref|YP_004809074.1|	-	0.78	10.2	11.5	0.22	11.9	5.2	2.5	2	1	0	2	2	2	0	Flagella	accessory	protein	C	(FlaC)
BLOC1_2	PF10046.9	gi|345006221|ref|YP_004809074.1|	-	0.8	10.1	13.5	5.5	7.4	3.4	2.6	1	1	2	3	3	3	0	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
DUF724	PF05266.14	gi|345006221|ref|YP_004809074.1|	-	0.85	9.4	10.7	1	9.2	9.7	1.5	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF724)
Laminin_I	PF06008.14	gi|345006221|ref|YP_004809074.1|	-	0.88	9.2	14.1	2.5	7.7	3.2	2.1	1	1	0	2	2	2	0	Laminin	Domain	I
ZapB	PF06005.12	gi|345006221|ref|YP_004809074.1|	-	0.88	10.1	18.9	2.7	8.5	3.7	2.2	2	0	0	2	2	2	0	Cell	division	protein	ZapB
Uds1	PF15456.6	gi|345006221|ref|YP_004809074.1|	-	0.91	9.7	8.4	1.2	9.3	7.5	1.6	1	1	0	1	1	1	0	Up-regulated	During	Septation
RasGAP_C	PF03836.15	gi|345006221|ref|YP_004809074.1|	-	0.92	9.7	9.9	3.4	7.8	1.0	2.1	1	1	0	2	2	2	0	RasGAP	C-terminus
MAP65_ASE1	PF03999.12	gi|345006221|ref|YP_004809074.1|	-	0.96	8.1	8.1	0.29	9.8	3.1	1.8	1	1	1	2	2	2	0	Microtubule	associated	protein	(MAP65/ASE1	family)
TraF_2	PF13729.6	gi|345006221|ref|YP_004809074.1|	-	0.98	8.7	8.3	0.59	9.4	0.3	2.0	1	1	1	2	2	2	0	F	plasmid	transfer	operon,	TraF,	protein
ATP-synt_D	PF01813.17	gi|345006221|ref|YP_004809074.1|	-	1	9.1	9.2	3.1	7.6	2.1	2.0	1	1	1	2	2	2	0	ATP	synthase	subunit	D
COG2	PF06148.11	gi|345006221|ref|YP_004809074.1|	-	1.1	9.4	9.6	1.3	9.1	1.9	2.0	1	1	1	2	2	2	0	COG	(conserved	oligomeric	Golgi)	complex	component,	COG2
Hemerythrin	PF01814.23	gi|345006221|ref|YP_004809074.1|	-	1.1	9.9	7.1	1.7	9.3	7.1	1.2	1	0	0	1	1	1	0	Hemerythrin	HHE	cation	binding	domain
YtxH	PF12732.7	gi|345006221|ref|YP_004809074.1|	-	1.3	9.6	7.5	7.4	7.2	0.6	2.7	1	1	1	2	2	2	0	YtxH-like	protein
DUF4446	PF14584.6	gi|345006221|ref|YP_004809074.1|	-	1.3	9.0	8.4	0.55	10.2	1.8	2.1	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF4446)
AAA_27	PF13514.6	gi|345006221|ref|YP_004809074.1|	-	1.3	8.5	5.8	6.2	6.4	0.4	2.0	1	1	1	2	2	2	0	AAA	domain
Spc24	PF08286.11	gi|345006221|ref|YP_004809074.1|	-	1.3	9.2	15.7	2.4	8.4	4.0	2.1	1	1	1	2	2	2	0	Spc24	subunit	of	Ndc80
eIF3_N	PF09440.10	gi|345006221|ref|YP_004809074.1|	-	1.4	9.4	10.3	0.28	11.6	2.7	2.0	1	1	1	2	2	2	0	eIF3	subunit	6	N	terminal	domain
DUF1690	PF07956.11	gi|345006221|ref|YP_004809074.1|	-	1.5	9.2	12.7	3.9	7.9	12.7	1.6	1	1	0	1	1	1	0	Protein	of	Unknown	function	(DUF1690)
DinB_2	PF12867.7	gi|345006221|ref|YP_004809074.1|	-	1.6	9.2	4.6	52	4.4	4.6	2.2	1	1	0	1	1	1	0	DinB	superfamily
GCN5L1	PF06320.13	gi|345006221|ref|YP_004809074.1|	-	1.7	8.8	9.0	2.8	8.1	1.1	2.1	1	1	1	2	2	2	0	GCN5-like	protein	1	(GCN5L1)
FUSC	PF04632.12	gi|345006221|ref|YP_004809074.1|	-	1.8	7.0	4.1	2.8	6.3	4.1	1.4	1	1	0	1	1	1	0	Fusaric	acid	resistance	protein	family
DUF948	PF06103.11	gi|345006221|ref|YP_004809074.1|	-	1.8	8.9	5.6	11	6.4	0.4	2.2	1	1	1	2	2	2	0	Bacterial	protein	of	unknown	function	(DUF948)
MukB_hinge	PF16330.5	gi|345006221|ref|YP_004809074.1|	-	2	8.1	10.9	2.1	8.0	1.8	2.2	1	1	0	2	2	2	0	MukB	hinge	domain
FlxA	PF14282.6	gi|345006221|ref|YP_004809074.1|	-	2.1	8.4	14.0	0.26	11.3	3.7	2.2	2	0	0	2	2	2	0	FlxA-like	protein
DUF4404	PF14357.6	gi|345006221|ref|YP_004809074.1|	-	2.1	9.0	16.3	0.76	10.5	3.3	2.4	1	1	2	3	3	3	0	Domain	of	unknown	function	(DUF4404)
FAT	PF02259.23	gi|345006221|ref|YP_004809074.1|	-	2.3	7.3	6.3	5.4	6.1	1.1	2.0	1	1	1	2	2	2	0	FAT	domain
Fib_alpha	PF08702.10	gi|345006221|ref|YP_004809074.1|	-	2.4	8.4	7.1	7.7	6.7	7.1	1.7	1	1	0	1	1	1	0	Fibrinogen	alpha/beta	chain	family
GIT_CC	PF16559.5	gi|345006221|ref|YP_004809074.1|	-	2.4	8.1	9.3	0.45	10.4	2.3	2.3	2	0	0	2	2	2	0	GIT	coiled-coil	Rho	guanine	nucleotide	exchange	factor
LXG	PF04740.12	gi|345006221|ref|YP_004809074.1|	-	2.7	7.6	11.3	27	4.4	11.2	2.0	1	1	0	1	1	1	0	LXG	domain	of	WXG	superfamily
TMF_TATA_bd	PF12325.8	gi|345006221|ref|YP_004809074.1|	-	2.8	8.2	18.2	38	4.6	18.2	2.0	1	1	0	1	1	1	0	TATA	element	modulatory	factor	1	TATA	binding
Sec34	PF04136.15	gi|345006221|ref|YP_004809074.1|	-	3.3	7.6	8.6	9.1	6.2	1.7	2.1	1	1	1	2	2	2	0	Sec34-like	family
DUF4164	PF13747.6	gi|345006221|ref|YP_004809074.1|	-	3.5	8.0	13.0	0.18	12.1	2.8	2.4	2	1	0	2	2	2	0	Domain	of	unknown	function	(DUF4164)
Prominin	PF05478.11	gi|345006221|ref|YP_004809074.1|	-	3.5	5.5	5.2	5.6	4.8	5.2	1.3	1	1	0	1	1	1	0	Prominin
Seryl_tRNA_N	PF02403.22	gi|345006221|ref|YP_004809074.1|	-	3.8	7.8	13.9	7.8	6.8	2.3	2.3	1	1	0	2	2	2	0	Seryl-tRNA	synthetase	N-terminal	domain
Snapin_Pallidin	PF14712.6	gi|345006221|ref|YP_004809074.1|	-	3.8	8.0	11.5	7.6	7.0	2.9	2.2	2	0	0	2	2	2	0	Snapin/Pallidin
CorA	PF01544.18	gi|345006221|ref|YP_004809074.1|	-	4.1	6.6	9.0	7.9	5.7	9.0	1.4	1	1	0	1	1	1	0	CorA-like	Mg2+	transporter	protein
Hrs_helical	PF12210.8	gi|345006221|ref|YP_004809074.1|	-	4.1	8.0	12.0	3.1	8.4	2.1	2.3	2	1	0	2	2	2	0	Hepatocyte	growth	factor-regulated	tyrosine	kinase	substrate
APG6_N	PF17675.1	gi|345006221|ref|YP_004809074.1|	-	4.3	7.9	25.5	4	8.0	10.3	2.1	1	1	1	2	2	2	0	Apg6	coiled-coil	region
Spc7	PF08317.11	gi|345006221|ref|YP_004809074.1|	-	4.4	6.1	17.2	3.5	6.4	4.3	1.9	1	1	1	2	2	2	0	Spc7	kinetochore	protein
Nup54	PF13874.6	gi|345006221|ref|YP_004809074.1|	-	4.5	7.4	9.5	1.2	9.3	2.1	2.1	1	1	0	1	1	1	0	Nucleoporin	complex	subunit	54
DHR10	PF18595.1	gi|345006221|ref|YP_004809074.1|	-	4.6	7.3	21.8	2.1	8.4	8.8	2.3	1	1	1	2	2	2	0	Designed	helical	repeat	protein	10	domain
Syntaxin-6_N	PF09177.11	gi|345006221|ref|YP_004809074.1|	-	5.1	7.7	11.3	4.7e+02	1.4	11.3	2.4	1	1	0	1	1	1	0	Syntaxin	6,	N-terminal
Jnk-SapK_ap_N	PF09744.9	gi|345006221|ref|YP_004809074.1|	-	5.1	7.3	18.9	11	6.2	18.9	1.5	1	1	0	1	1	1	0	JNK_SAPK-associated	protein-1
HemX	PF04375.14	gi|345006221|ref|YP_004809074.1|	-	5.2	6.3	15.9	2.5e+02	0.7	15.9	2.0	1	1	0	1	1	1	0	HemX,	putative	uroporphyrinogen-III	C-methyltransferase
Fzo_mitofusin	PF04799.13	gi|345006221|ref|YP_004809074.1|	-	6.8	6.2	9.4	5.3	6.6	2.5	2.1	1	1	1	2	2	2	0	fzo-like	conserved	region
YabA	PF06156.13	gi|345006221|ref|YP_004809074.1|	-	8.6	7.1	9.5	5.8	7.6	2.1	2.2	1	1	1	2	2	2	0	Initiation	control	protein	YabA
FapA	PF03961.13	gi|345006221|ref|YP_004809074.1|	-	8.7	4.8	8.4	17	3.8	8.4	1.5	1	1	0	1	1	1	0	Flagellar	Assembly	Protein	A
Swi5	PF07061.11	gi|345006221|ref|YP_004809074.1|	-	9.8	6.4	13.0	5.2	7.2	3.2	2.5	1	1	0	2	2	2	0	Swi5
DUF3194	PF11419.8	gi|345006222|ref|YP_004809075.1|	-	2.4e-05	24.6	1.0	3.1e-05	24.2	1.0	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3194)
Ribosomal_S30AE	PF02482.19	gi|345006222|ref|YP_004809075.1|	-	0.1	13.4	0.4	0.12	13.2	0.4	1.1	1	0	0	1	1	1	0	Sigma	54	modulation	protein	/	S30EA	ribosomal	protein
MucB_RseB_C	PF17188.4	gi|345006222|ref|YP_004809075.1|	-	0.12	12.7	0.0	0.13	12.5	0.0	1.2	1	0	0	1	1	1	0	MucB/RseB	C-terminal	domain
DUF2070	PF09843.9	gi|345006223|ref|YP_004809076.1|	-	3.2e-209	695.9	0.0	3.7e-209	695.7	0.0	1.0	1	0	0	1	1	1	1	Predicted	membrane	protein	(DUF2070)
GATase	PF00117.28	gi|345006224|ref|YP_004809077.1|	-	1.8e-32	112.7	0.0	2.1e-32	112.5	0.0	1.0	1	0	0	1	1	1	1	Glutamine	amidotransferase	class-I
Peptidase_C26	PF07722.13	gi|345006224|ref|YP_004809077.1|	-	1.5e-14	54.3	1.1	1.7e-12	47.6	0.1	2.9	1	1	1	2	2	2	1	Peptidase	C26
GATase_3	PF07685.14	gi|345006224|ref|YP_004809077.1|	-	0.033	13.8	0.2	0.056	13.0	0.2	1.6	1	1	0	1	1	1	0	CobB/CobQ-like	glutamine	amidotransferase	domain
Copper-bind	PF00127.20	gi|345006225|ref|YP_004809078.1|	-	6e-12	45.9	0.3	6e-12	45.9	0.3	1.8	2	0	0	2	2	2	1	Copper	binding	proteins,	plastocyanin/azurin	family
Nop14	PF04147.12	gi|345006225|ref|YP_004809078.1|	-	0.29	9.3	6.0	0.34	9.1	6.0	1.1	1	0	0	1	1	1	0	Nop14-like	family
SelP_N	PF04592.14	gi|345006225|ref|YP_004809078.1|	-	1.7	8.0	7.5	2.7	7.3	7.5	1.3	1	0	0	1	1	1	0	Selenoprotein	P,	N	terminal	region
NOA36	PF06524.12	gi|345006225|ref|YP_004809078.1|	-	4.8	6.4	8.8	6.8	5.9	8.8	1.2	1	0	0	1	1	1	0	NOA36	protein
HTH_20	PF12840.7	gi|345006226|ref|YP_004809079.1|	-	0.00019	21.4	0.5	0.00028	20.9	0.5	1.2	1	0	0	1	1	1	1	Helix-turn-helix	domain
MarR_2	PF12802.7	gi|345006226|ref|YP_004809079.1|	-	0.017	15.0	0.1	0.025	14.4	0.1	1.3	1	0	0	1	1	1	0	MarR	family
HTH_11	PF08279.12	gi|345006226|ref|YP_004809079.1|	-	0.017	15.0	0.2	0.032	14.2	0.2	1.5	1	0	0	1	1	1	0	HTH	domain
HTH_24	PF13412.6	gi|345006226|ref|YP_004809079.1|	-	0.02	14.4	0.1	0.037	13.6	0.1	1.5	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
Polysacc_synt_4	PF04669.13	gi|345006226|ref|YP_004809079.1|	-	0.048	13.2	0.0	0.062	12.8	0.0	1.1	1	0	0	1	1	1	0	Polysaccharide	biosynthesis
HisKA_7TM	PF16927.5	gi|345006227|ref|YP_004809080.1|	-	0.047	13.7	3.6	0.054	13.5	3.6	1.0	1	0	0	1	1	1	0	N-terminal	7TM	region	of	histidine	kinase
TIC20	PF16166.5	gi|345006227|ref|YP_004809080.1|	-	0.12	12.2	0.6	0.15	11.8	0.6	1.2	1	0	0	1	1	1	0	Chloroplast	import	apparatus	Tic20-like
DUF1464	PF07318.12	gi|345006227|ref|YP_004809080.1|	-	0.2	10.8	1.5	0.21	10.7	1.5	1.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1464)
DUF2157	PF09925.9	gi|345006228|ref|YP_004809081.1|	-	0.076	12.8	4.3	0.091	12.5	4.3	1.2	1	1	0	1	1	1	0	Predicted	membrane	protein	(DUF2157)
RecA_dep_nuc	PF16786.5	gi|345006229|ref|YP_004809082.1|	-	0.031	14.4	1.3	0.071	13.2	1.3	1.7	1	1	0	1	1	1	0	Recombination	enhancement,	RecA-dependent	nuclease
DUF192	PF02643.15	gi|345006230|ref|YP_004809083.1|	-	3.9e-21	75.0	0.0	4.5e-21	74.8	0.0	1.0	1	0	0	1	1	1	1	Uncharacterized	ACR,	COG1430
TrkA_N	PF02254.18	gi|345006231|ref|YP_004809084.1|	-	1.9e-34	118.4	9.1	7.3e-17	61.7	0.6	2.8	2	1	0	2	2	2	2	TrkA-N	domain
TrkA_C	PF02080.21	gi|345006231|ref|YP_004809084.1|	-	1.4e-21	76.0	0.9	2.7e-10	39.9	0.1	3.8	4	0	0	4	4	4	2	TrkA-C	domain
KH_1	PF00013.29	gi|345006231|ref|YP_004809084.1|	-	5.2e-05	23.0	0.1	0.02	14.7	0.1	3.6	3	0	0	3	3	3	1	KH	domain
XdhC_C	PF13478.6	gi|345006231|ref|YP_004809084.1|	-	0.0064	17.0	0.6	0.11	13.0	0.2	2.4	2	0	0	2	2	2	1	XdhC	Rossmann	domain
ELFV_dehydrog	PF00208.21	gi|345006231|ref|YP_004809084.1|	-	0.0074	16.0	0.4	0.015	15.0	0.4	1.5	1	0	0	1	1	1	1	Glutamate/Leucine/Phenylalanine/Valine	dehydrogenase
IlvN	PF07991.12	gi|345006231|ref|YP_004809084.1|	-	0.0081	15.7	1.0	0.022	14.3	0.3	2.0	2	0	0	2	2	2	1	Acetohydroxy	acid	isomeroreductase,	NADPH-binding	domain
2-Hacid_dh_C	PF02826.19	gi|345006231|ref|YP_004809084.1|	-	0.073	12.4	0.0	0.15	11.4	0.0	1.5	1	0	0	1	1	1	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
NAD_binding_7	PF13241.6	gi|345006231|ref|YP_004809084.1|	-	0.13	12.8	1.5	0.47	10.9	0.3	2.3	2	0	0	2	2	2	0	Putative	NAD(P)-binding
Ion_trans_2	PF07885.16	gi|345006231|ref|YP_004809084.1|	-	0.47	10.5	5.7	1	9.4	5.7	1.6	1	0	0	1	1	1	0	Ion	channel
AlaDh_PNT_C	PF01262.21	gi|345006231|ref|YP_004809084.1|	-	0.65	9.3	5.1	2.2	7.5	5.1	1.9	1	1	0	1	1	1	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
ADH_zinc_N	PF00107.26	gi|345006231|ref|YP_004809084.1|	-	3	7.8	6.0	24	4.9	0.1	4.2	4	2	1	5	5	5	0	Zinc-binding	dehydrogenase
NAD_binding_10	PF13460.6	gi|345006232|ref|YP_004809085.1|	-	3.7e-24	85.6	0.3	5.1e-24	85.2	0.3	1.3	1	0	0	1	1	1	1	NAD(P)H-binding
NmrA	PF05368.13	gi|345006232|ref|YP_004809085.1|	-	1.5e-13	50.9	0.0	1.7e-13	50.7	0.0	1.1	1	0	0	1	1	1	1	NmrA-like	family
Epimerase	PF01370.21	gi|345006232|ref|YP_004809085.1|	-	6.3e-12	45.5	0.0	1.5e-11	44.2	0.0	1.6	1	1	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
3Beta_HSD	PF01073.19	gi|345006232|ref|YP_004809085.1|	-	4.2e-10	39.1	0.0	8.8e-10	38.0	0.0	1.5	1	1	0	2	2	2	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
NAD_binding_4	PF07993.12	gi|345006232|ref|YP_004809085.1|	-	3.3e-05	23.2	0.0	0.00012	21.4	0.0	2.0	2	0	0	2	2	2	1	Male	sterility	protein
GDP_Man_Dehyd	PF16363.5	gi|345006232|ref|YP_004809085.1|	-	0.00098	18.6	0.0	0.0014	18.1	0.0	1.3	1	0	0	1	1	1	1	GDP-mannose	4,6	dehydratase
RmlD_sub_bind	PF04321.17	gi|345006232|ref|YP_004809085.1|	-	0.0023	17.1	0.0	0.037	13.1	0.0	2.1	2	0	0	2	2	2	1	RmlD	substrate	binding	domain
DapB_N	PF01113.20	gi|345006232|ref|YP_004809085.1|	-	0.073	13.2	0.0	0.13	12.3	0.0	1.4	1	0	0	1	1	1	0	Dihydrodipicolinate	reductase,	N-terminus
adh_short	PF00106.25	gi|345006232|ref|YP_004809085.1|	-	0.081	12.4	0.1	0.13	11.7	0.1	1.3	1	0	0	1	1	1	0	short	chain	dehydrogenase
Polysacc_synt_2	PF02719.15	gi|345006232|ref|YP_004809085.1|	-	0.12	11.5	0.0	4.6	6.3	0.0	2.2	2	0	0	2	2	2	0	Polysaccharide	biosynthesis	protein
DUF5337	PF17272.2	gi|345006233|ref|YP_004809086.1|	-	0.013	15.3	0.8	0.013	15.3	0.8	3.6	2	1	1	3	3	3	0	Family	of	unknown	function	(DUF5337)
DUF2101	PF09874.9	gi|345006233|ref|YP_004809086.1|	-	0.83	9.3	7.6	0.032	13.9	1.8	1.6	2	0	0	2	2	2	0	Predicted	membrane	protein	(DUF2101)
Pyridoxal_deC	PF00282.19	gi|345006235|ref|YP_004809088.1|	-	1.2e-72	244.8	0.0	1.5e-72	244.4	0.0	1.0	1	0	0	1	1	1	1	Pyridoxal-dependent	decarboxylase	conserved	domain
Beta_elim_lyase	PF01212.21	gi|345006235|ref|YP_004809088.1|	-	4.4e-05	22.9	0.0	6.9e-05	22.3	0.0	1.3	1	0	0	1	1	1	1	Beta-eliminating	lyase
SepSecS	PF05889.13	gi|345006235|ref|YP_004809088.1|	-	5.6e-05	22.0	0.0	9.2e-05	21.3	0.0	1.2	1	0	0	1	1	1	1	O-phosphoseryl-tRNA(Sec)	selenium	transferase,	SepSecS
Aminotran_1_2	PF00155.21	gi|345006235|ref|YP_004809088.1|	-	0.0037	16.5	0.0	0.035	13.3	0.0	2.0	2	0	0	2	2	2	1	Aminotransferase	class	I	and	II
Aminotran_5	PF00266.19	gi|345006235|ref|YP_004809088.1|	-	0.011	14.7	0.0	0.018	14.0	0.0	1.2	1	0	0	1	1	1	0	Aminotransferase	class-V
DegT_DnrJ_EryC1	PF01041.17	gi|345006235|ref|YP_004809088.1|	-	0.028	13.7	0.4	0.047	13.0	0.4	1.4	1	0	0	1	1	1	0	DegT/DnrJ/EryC1/StrS	aminotransferase	family
OrfB_IS605	PF01385.19	gi|345006236|ref|YP_004809089.1|	-	4.3e-27	94.7	0.0	1.6e-26	92.9	0.0	2.0	2	0	0	2	2	2	1	Probable	transposase
OrfB_Zn_ribbon	PF07282.11	gi|345006236|ref|YP_004809089.1|	-	7.2e-19	67.5	1.0	1.5e-18	66.4	1.0	1.6	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
C1_2	PF03107.16	gi|345006236|ref|YP_004809089.1|	-	0.00054	20.2	1.2	0.0018	18.5	1.2	1.9	1	0	0	1	1	1	1	C1	domain
Complex1_30kDa	PF00329.19	gi|345006236|ref|YP_004809089.1|	-	0.065	13.9	0.0	0.13	12.9	0.0	1.5	1	0	0	1	1	1	0	Respiratory-chain	NADH	dehydrogenase,	30	Kd	subunit
A2L_zn_ribbon	PF08792.10	gi|345006236|ref|YP_004809089.1|	-	0.15	11.8	2.8	0.44	10.3	2.8	1.8	1	0	0	1	1	1	0	A2L	zinc	ribbon	domain
HalOD1	PF18545.1	gi|345006237|ref|YP_004809090.1|	-	5.1e-24	84.3	0.3	7.1e-24	83.9	0.3	1.1	1	0	0	1	1	1	1	Halobacterial	output	domain	1
CBS	PF00571.28	gi|345006238|ref|YP_004809091.1|	-	4e-36	123.3	9.0	1.2e-11	44.9	0.9	4.4	4	0	0	4	4	4	4	CBS	domain
Peptidase_M24	PF00557.24	gi|345006241|ref|YP_004809094.1|	-	3.1e-34	118.5	0.2	3.7e-34	118.3	0.2	1.1	1	0	0	1	1	1	1	Metallopeptidase	family	M24
DUF2285	PF10074.9	gi|345006241|ref|YP_004809094.1|	-	0.048	14.3	0.0	0.077	13.6	0.0	1.3	1	0	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2285)
AA_permease_2	PF13520.6	gi|345006243|ref|YP_004809096.1|	-	9.2e-40	136.7	43.6	1.2e-39	136.4	43.6	1.1	1	0	0	1	1	1	1	Amino	acid	permease
AA_permease	PF00324.21	gi|345006243|ref|YP_004809096.1|	-	1.4e-32	112.9	39.2	2.2e-32	112.3	39.2	1.3	1	0	0	1	1	1	1	Amino	acid	permease
Usp	PF00582.26	gi|345006243|ref|YP_004809096.1|	-	1.4e-22	80.8	7.0	2e-12	47.8	0.7	2.4	2	0	0	2	2	2	2	Universal	stress	protein	family
AA_permease_C	PF13906.6	gi|345006243|ref|YP_004809096.1|	-	2.3e-08	34.0	0.8	2.3e-08	34.0	0.8	3.0	3	0	0	3	3	3	1	C-terminus	of	AA_permease
DUF4969	PF16339.5	gi|345006243|ref|YP_004809096.1|	-	0.32	11.4	1.9	55	4.2	0.1	3.6	2	1	1	3	3	3	0	Domain	of	unknown	function	(DUF4969)
DisA_N	PF02457.16	gi|345006244|ref|YP_004809097.1|	-	1.4e-05	24.6	0.1	2.2e-05	24.0	0.1	1.2	1	0	0	1	1	1	1	DisA	bacterial	checkpoint	controller	nucleotide-binding
DUF58	PF01882.18	gi|345006246|ref|YP_004809099.1|	-	3e-20	72.3	2.7	3.3e-20	72.2	0.3	2.3	2	1	0	2	2	2	1	Protein	of	unknown	function	DUF58
DUF11	PF01345.18	gi|345006246|ref|YP_004809099.1|	-	2.3e-10	40.6	3.1	6e-10	39.3	3.1	1.7	1	0	0	1	1	1	1	Domain	of	unknown	function	DUF11
NPCBM_assoc	PF10633.9	gi|345006246|ref|YP_004809099.1|	-	7.9e-05	22.8	0.9	0.0002	21.5	0.9	1.7	1	0	0	1	1	1	1	NPCBM-associated,	NEW3	domain	of	alpha-galactosidase
CARDB	PF07705.11	gi|345006246|ref|YP_004809099.1|	-	0.00074	19.7	0.0	0.0015	18.7	0.0	1.5	1	0	0	1	1	1	1	CARDB
Glyco_transf_4	PF13439.6	gi|345006246|ref|YP_004809099.1|	-	0.018	15.1	0.8	0.044	13.8	0.1	2.0	2	0	0	2	2	2	0	Glycosyltransferase	Family	4
DUF4232	PF14016.6	gi|345006246|ref|YP_004809099.1|	-	0.071	13.2	7.3	0.047	13.8	3.4	2.4	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF4232)
NAD_binding_7	PF13241.6	gi|345006246|ref|YP_004809099.1|	-	0.13	12.7	0.0	8.7	6.9	0.0	2.5	1	1	0	1	1	1	0	Putative	NAD(P)-binding
DUF2157	PF09925.9	gi|345006247|ref|YP_004809100.1|	-	0.017	14.9	0.1	0.025	14.4	0.1	1.3	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2157)
Cytochrom_B558a	PF05038.13	gi|345006247|ref|YP_004809100.1|	-	0.11	12.0	0.2	0.4	10.2	0.1	1.8	2	0	0	2	2	2	0	Cytochrome	Cytochrome	b558	alpha-subunit
DUF4129	PF13559.6	gi|345006248|ref|YP_004809101.1|	-	3.1e-08	33.7	6.9	8.1e-08	32.4	6.9	1.7	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4129)
DUF1206	PF06724.11	gi|345006248|ref|YP_004809101.1|	-	0.017	15.2	2.7	0.017	15.2	2.7	3.6	4	0	0	4	4	4	0	Domain	of	Unknown	Function	(DUF1206)
DUF2207	PF09972.9	gi|345006248|ref|YP_004809101.1|	-	0.23	10.2	0.0	0.38	9.5	0.0	1.5	1	1	0	1	1	1	0	Predicted	membrane	protein	(DUF2207)
ODV-E18	PF10717.9	gi|345006248|ref|YP_004809101.1|	-	5.8	6.9	9.6	4	7.4	6.0	2.5	2	1	0	2	2	2	0	Occlusion-derived	virus	envelope	protein	ODV-E18
Amino_oxidase	PF01593.24	gi|345006249|ref|YP_004809102.1|	-	6.5e-13	48.8	0.9	1.2e-05	24.8	0.0	2.0	1	1	1	2	2	2	2	Flavin	containing	amine	oxidoreductase
NAD_binding_8	PF13450.6	gi|345006249|ref|YP_004809102.1|	-	1e-10	41.7	0.1	2e-10	40.7	0.1	1.5	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
LMWPc	PF01451.21	gi|345006250|ref|YP_004809103.1|	-	1.6e-22	80.4	0.2	3.5e-22	79.3	0.2	1.5	1	1	0	1	1	1	1	Low	molecular	weight	phosphotyrosine	protein	phosphatase
DUF3618	PF12277.8	gi|345006250|ref|YP_004809103.1|	-	0.14	12.4	0.5	0.14	12.4	0.5	1.9	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3618)
SBF	PF01758.16	gi|345006251|ref|YP_004809104.1|	-	3.5e-48	163.9	12.4	3.5e-48	163.9	12.4	1.9	2	0	0	2	2	2	1	Sodium	Bile	acid	symporter	family
DUF3464	PF11947.8	gi|345006251|ref|YP_004809104.1|	-	0.14	11.9	0.7	0.74	9.6	0.7	2.3	1	0	0	1	1	1	0	Photosynthesis	affected	mutant	68
HTH_20	PF12840.7	gi|345006252|ref|YP_004809105.1|	-	1.7e-10	40.8	1.6	2.3e-10	40.4	0.3	1.8	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_5	PF01022.20	gi|345006252|ref|YP_004809105.1|	-	5.2e-08	32.6	0.1	1e-07	31.7	0.1	1.6	1	1	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
DUF4423	PF14394.6	gi|345006252|ref|YP_004809105.1|	-	0.016	14.9	0.0	0.025	14.3	0.0	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4423)
GntR	PF00392.21	gi|345006252|ref|YP_004809105.1|	-	0.021	14.4	0.1	0.039	13.6	0.1	1.5	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	gntR	family
HTH_34	PF13601.6	gi|345006252|ref|YP_004809105.1|	-	0.032	14.4	0.0	0.057	13.6	0.0	1.4	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
HTH_27	PF13463.6	gi|345006252|ref|YP_004809105.1|	-	0.045	14.2	0.0	0.076	13.5	0.0	1.5	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
TrmB	PF01978.19	gi|345006252|ref|YP_004809105.1|	-	0.046	13.6	0.0	0.095	12.6	0.0	1.6	1	1	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
PK	PF00224.21	gi|345006253|ref|YP_004809106.1|	-	4.5e-108	361.2	1.9	6.8e-108	360.6	1.9	1.2	1	0	0	1	1	1	1	Pyruvate	kinase,	barrel	domain
PK_C	PF02887.16	gi|345006253|ref|YP_004809106.1|	-	1.3e-27	96.3	0.5	3.6e-27	94.9	0.5	1.8	1	0	0	1	1	1	1	Pyruvate	kinase,	alpha/beta	domain
PEP-utilizers	PF00391.23	gi|345006253|ref|YP_004809106.1|	-	9e-12	44.5	0.7	9e-12	44.5	0.7	3.4	4	0	0	4	4	4	1	PEP-utilising	enzyme,	mobile	domain
HpcH_HpaI	PF03328.14	gi|345006253|ref|YP_004809106.1|	-	0.00031	20.0	2.3	0.0007	18.8	1.0	2.2	1	1	1	2	2	2	1	HpcH/HpaI	aldolase/citrate	lyase	family
MTHFR	PF02219.17	gi|345006253|ref|YP_004809106.1|	-	0.0089	15.4	0.0	0.016	14.6	0.0	1.3	1	0	0	1	1	1	1	Methylenetetrahydrofolate	reductase
ThiG	PF05690.14	gi|345006253|ref|YP_004809106.1|	-	3.5	6.9	11.6	5.3	6.3	0.2	3.8	3	1	1	4	4	4	0	Thiazole	biosynthesis	protein	ThiG
ROK	PF00480.20	gi|345006254|ref|YP_004809107.1|	-	2.6e-48	165.0	0.4	3e-48	164.8	0.4	1.0	1	0	0	1	1	1	1	ROK	family
BcrAD_BadFG	PF01869.20	gi|345006254|ref|YP_004809107.1|	-	0.011	15.3	0.7	0.016	14.7	0.7	1.3	1	0	0	1	1	1	0	BadF/BadG/BcrA/BcrD	ATPase	family
FGGY_N	PF00370.21	gi|345006254|ref|YP_004809107.1|	-	0.061	12.9	0.0	0.098	12.2	0.0	1.4	1	0	0	1	1	1	0	FGGY	family	of	carbohydrate	kinases,	N-terminal	domain
Ysc84	PF04366.12	gi|345006254|ref|YP_004809107.1|	-	0.45	10.3	2.5	1.9	8.2	2.5	2.0	1	1	0	1	1	1	0	Las17-binding	protein	actin	regulator
ADH_N	PF08240.12	gi|345006255|ref|YP_004809108.1|	-	2e-28	98.4	1.2	3.6e-28	97.6	1.2	1.4	1	0	0	1	1	1	1	Alcohol	dehydrogenase	GroES-like	domain
ADH_zinc_N	PF00107.26	gi|345006255|ref|YP_004809108.1|	-	5e-24	84.7	0.1	7.9e-24	84.1	0.1	1.3	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
ADH_zinc_N_2	PF13602.6	gi|345006255|ref|YP_004809108.1|	-	0.00016	22.7	0.1	0.00038	21.5	0.0	1.7	2	0	0	2	2	2	1	Zinc-binding	dehydrogenase
AlaDh_PNT_C	PF01262.21	gi|345006255|ref|YP_004809108.1|	-	0.0002	20.7	1.5	0.00037	19.8	1.5	1.4	1	0	0	1	1	1	1	Alanine	dehydrogenase/PNT,	C-terminal	domain
Aldedh	PF00171.22	gi|345006256|ref|YP_004809109.1|	-	6e-154	513.0	0.1	6.7e-154	512.8	0.1	1.0	1	0	0	1	1	1	1	Aldehyde	dehydrogenase	family
AFOR_C	PF01314.18	gi|345006257|ref|YP_004809110.1|	-	6.2e-114	381.0	0.3	9.9e-114	380.3	0.3	1.2	1	0	0	1	1	1	1	Aldehyde	ferredoxin	oxidoreductase,	domains	2	&	3
AFOR_N	PF02730.15	gi|345006257|ref|YP_004809110.1|	-	6.9e-70	235.0	0.0	1.1e-69	234.3	0.0	1.3	1	0	0	1	1	1	1	Aldehyde	ferredoxin	oxidoreductase,	N-terminal	domain
ABC_tran	PF00005.27	gi|345006258|ref|YP_004809111.1|	-	5e-38	130.7	0.0	1.6e-37	129.1	0.0	1.8	2	0	0	2	2	2	1	ABC	transporter
TOBE_2	PF08402.10	gi|345006258|ref|YP_004809111.1|	-	5.3e-15	55.3	0.0	1.5e-14	53.9	0.0	1.8	1	0	0	1	1	1	1	TOBE	domain
AAA_21	PF13304.6	gi|345006258|ref|YP_004809111.1|	-	3.2e-07	30.4	0.0	0.002	18.0	0.0	2.2	2	0	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_22	PF13401.6	gi|345006258|ref|YP_004809111.1|	-	0.00013	22.3	0.8	0.023	15.0	0.0	2.8	2	1	0	2	2	2	1	AAA	domain
Rad17	PF03215.15	gi|345006258|ref|YP_004809111.1|	-	0.0021	18.0	0.0	0.0034	17.3	0.0	1.3	1	0	0	1	1	1	1	Rad17	P-loop	domain
AAA_16	PF13191.6	gi|345006258|ref|YP_004809111.1|	-	0.0068	16.8	0.8	0.037	14.4	0.0	2.3	2	1	0	2	2	2	1	AAA	ATPase	domain
AAA_29	PF13555.6	gi|345006258|ref|YP_004809111.1|	-	0.012	15.3	0.1	0.45	10.3	0.0	2.4	2	0	0	2	2	2	0	P-loop	containing	region	of	AAA	domain
AAA	PF00004.29	gi|345006258|ref|YP_004809111.1|	-	0.017	15.6	0.0	0.14	12.6	0.0	2.2	2	0	0	2	2	2	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
RsgA_GTPase	PF03193.16	gi|345006258|ref|YP_004809111.1|	-	0.018	15.0	0.3	0.041	13.8	0.0	1.8	3	0	0	3	3	2	0	RsgA	GTPase
AAA_23	PF13476.6	gi|345006258|ref|YP_004809111.1|	-	0.018	15.5	0.7	0.084	13.4	0.0	2.3	3	0	0	3	3	3	0	AAA	domain
PhoH	PF02562.16	gi|345006258|ref|YP_004809111.1|	-	0.034	13.6	0.1	4.6	6.7	0.1	2.2	2	0	0	2	2	2	0	PhoH-like	protein
Mg_chelatase	PF01078.21	gi|345006258|ref|YP_004809111.1|	-	0.034	13.5	0.0	0.076	12.4	0.0	1.5	1	0	0	1	1	1	0	Magnesium	chelatase,	subunit	ChlI
AAA_19	PF13245.6	gi|345006258|ref|YP_004809111.1|	-	0.13	12.6	1.0	0.58	10.5	0.8	2.0	1	1	0	1	1	1	0	AAA	domain
AAA_28	PF13521.6	gi|345006258|ref|YP_004809111.1|	-	0.14	12.4	0.8	1.8	8.8	0.4	2.3	2	0	0	2	2	2	0	AAA	domain
AAA_30	PF13604.6	gi|345006258|ref|YP_004809111.1|	-	0.17	11.6	0.5	1.1	8.9	0.0	2.4	3	0	0	3	3	3	0	AAA	domain
SBP_bac_8	PF13416.6	gi|345006259|ref|YP_004809112.1|	-	2.1e-27	96.6	8.0	3e-27	96.2	8.0	1.2	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_6	PF13343.6	gi|345006259|ref|YP_004809112.1|	-	3.4e-21	75.8	1.1	5e-21	75.2	1.1	1.2	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_11	PF13531.6	gi|345006259|ref|YP_004809112.1|	-	6.4e-06	26.1	0.0	1.6e-05	24.7	0.0	1.6	1	1	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_1	PF01547.25	gi|345006259|ref|YP_004809112.1|	-	0.00012	22.2	6.5	0.00075	19.5	6.5	2.0	1	1	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
TAT_signal	PF10518.9	gi|345006259|ref|YP_004809112.1|	-	0.031	14.1	8.1	0.067	13.1	8.1	1.6	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
BPD_transp_1	PF00528.22	gi|345006260|ref|YP_004809113.1|	-	3e-18	66.2	17.1	3e-18	66.2	17.1	2.1	1	1	0	2	2	2	2	Binding-protein-dependent	transport	system	inner	membrane	component
BPD_transp_1	PF00528.22	gi|345006261|ref|YP_004809114.1|	-	8e-08	32.2	28.0	9.9e-07	28.7	28.0	2.4	1	1	0	1	1	1	1	Binding-protein-dependent	transport	system	inner	membrane	component
DUF2781	PF10914.8	gi|345006261|ref|YP_004809114.1|	-	0.17	12.3	11.9	0.045	14.2	6.4	2.3	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF2781)
DUF2839	PF10999.8	gi|345006261|ref|YP_004809114.1|	-	6.2	7.3	7.1	0.54	10.7	0.2	2.6	2	1	1	3	3	3	0	Protein	of	unknown	function	(DUF2839)
HTH_24	PF13412.6	gi|345006262|ref|YP_004809115.1|	-	8.3e-15	54.1	0.5	1.3e-14	53.4	0.5	1.3	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
AsnC_trans_reg	PF01037.21	gi|345006262|ref|YP_004809115.1|	-	2.6e-14	52.9	0.3	3.3e-13	49.4	0.1	2.2	2	0	0	2	2	2	1	Lrp/AsnC	ligand	binding	domain
HTH_AsnC-type	PF13404.6	gi|345006262|ref|YP_004809115.1|	-	1.9e-13	50.0	3.0	1.9e-13	50.0	3.0	1.8	2	0	0	2	2	2	1	AsnC-type	helix-turn-helix	domain
HTH_IclR	PF09339.10	gi|345006262|ref|YP_004809115.1|	-	2.7e-07	30.3	0.2	5.4e-06	26.1	0.0	2.5	2	1	1	3	3	3	1	IclR	helix-turn-helix	domain
MarR_2	PF12802.7	gi|345006262|ref|YP_004809115.1|	-	5.8e-06	26.1	0.8	1.7e-05	24.6	0.1	2.0	3	0	0	3	3	3	1	MarR	family
MarR	PF01047.22	gi|345006262|ref|YP_004809115.1|	-	1.5e-05	24.8	0.0	4.1e-05	23.4	0.0	1.6	1	0	0	1	1	1	1	MarR	family
HTH_27	PF13463.6	gi|345006262|ref|YP_004809115.1|	-	1.8e-05	25.1	0.7	5.1e-05	23.7	0.2	1.9	2	1	0	2	2	2	1	Winged	helix	DNA-binding	domain
HTH_11	PF08279.12	gi|345006262|ref|YP_004809115.1|	-	0.00012	22.0	0.2	0.00022	21.1	0.2	1.4	1	0	0	1	1	1	1	HTH	domain
HTH_20	PF12840.7	gi|345006262|ref|YP_004809115.1|	-	0.00012	22.0	0.2	0.00033	20.6	0.2	1.7	1	0	0	1	1	1	1	Helix-turn-helix	domain
Fe_dep_repress	PF01325.19	gi|345006262|ref|YP_004809115.1|	-	0.0015	18.7	0.0	0.0034	17.6	0.0	1.6	1	0	0	1	1	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_47	PF16221.5	gi|345006262|ref|YP_004809115.1|	-	0.0016	18.0	0.1	0.003	17.1	0.1	1.5	1	0	0	1	1	1	1	winged	helix-turn-helix
NapD	PF03927.13	gi|345006262|ref|YP_004809115.1|	-	0.002	18.1	0.5	0.0054	16.7	0.2	1.8	2	0	0	2	2	2	1	NapD	protein
TrmB	PF01978.19	gi|345006262|ref|YP_004809115.1|	-	0.0025	17.7	0.2	0.0076	16.1	0.0	1.8	2	0	0	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
FtsK_gamma	PF09397.10	gi|345006262|ref|YP_004809115.1|	-	0.015	15.0	0.2	0.034	13.9	0.2	1.6	1	0	0	1	1	1	0	Ftsk	gamma	domain
HTH_34	PF13601.6	gi|345006262|ref|YP_004809115.1|	-	0.034	14.3	0.0	0.064	13.4	0.0	1.4	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
RuvB_C	PF05491.13	gi|345006262|ref|YP_004809115.1|	-	0.039	13.8	0.0	0.07	13.0	0.0	1.4	1	0	0	1	1	1	0	RuvB	C-terminal	winged	helix	domain
LexA_DNA_bind	PF01726.16	gi|345006262|ref|YP_004809115.1|	-	0.064	13.0	0.0	0.11	12.2	0.0	1.5	1	0	0	1	1	1	0	LexA	DNA	binding	domain
HTH_5	PF01022.20	gi|345006262|ref|YP_004809115.1|	-	0.086	12.7	0.0	0.18	11.7	0.0	1.6	2	0	0	2	2	1	0	Bacterial	regulatory	protein,	arsR	family
FeoC	PF09012.10	gi|345006262|ref|YP_004809115.1|	-	0.094	12.8	0.0	0.17	12.0	0.0	1.4	1	0	0	1	1	1	0	FeoC	like	transcriptional	regulator
RPA_C	PF08784.11	gi|345006262|ref|YP_004809115.1|	-	0.097	13.3	0.0	0.23	12.2	0.0	1.6	2	0	0	2	2	2	0	Replication	protein	A	C	terminal
Amidinotransf	PF02274.17	gi|345006263|ref|YP_004809116.1|	-	4.7e-32	111.4	0.8	2e-30	106.1	0.8	2.0	1	1	0	1	1	1	1	Amidinotransferase
DUF1059	PF06348.11	gi|345006263|ref|YP_004809116.1|	-	0.074	13.3	1.2	0.14	12.4	1.2	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1059)
DAO	PF01266.24	gi|345006264|ref|YP_004809117.1|	-	2.1e-62	211.8	2.2	2.3e-62	211.6	2.2	1.0	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
FAD_binding_2	PF00890.24	gi|345006264|ref|YP_004809117.1|	-	5.3e-09	35.6	0.5	8.6e-09	35.0	0.5	1.3	1	0	0	1	1	1	1	FAD	binding	domain
Pyr_redox_2	PF07992.14	gi|345006264|ref|YP_004809117.1|	-	1.2e-07	31.2	0.0	0.00021	20.6	0.0	2.2	2	0	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
Trp_halogenase	PF04820.14	gi|345006264|ref|YP_004809117.1|	-	0.00032	19.7	2.9	0.0034	16.3	0.0	2.1	2	0	0	2	2	2	1	Tryptophan	halogenase
NAD_binding_8	PF13450.6	gi|345006264|ref|YP_004809117.1|	-	0.00037	20.7	1.4	0.0013	18.9	1.4	2.0	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
HI0933_like	PF03486.14	gi|345006264|ref|YP_004809117.1|	-	0.00071	18.4	2.3	0.45	9.2	0.0	2.1	2	0	0	2	2	2	2	HI0933-like	protein
Pyr_redox_3	PF13738.6	gi|345006264|ref|YP_004809117.1|	-	0.00081	18.7	1.5	0.11	11.8	0.0	2.2	2	0	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
TrkA_N	PF02254.18	gi|345006264|ref|YP_004809117.1|	-	0.0018	18.5	0.8	0.054	13.8	0.2	2.4	2	0	0	2	2	2	1	TrkA-N	domain
Pyr_redox	PF00070.27	gi|345006264|ref|YP_004809117.1|	-	0.0028	18.2	0.7	0.25	11.9	0.3	2.4	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
Lycopene_cycl	PF05834.12	gi|345006264|ref|YP_004809117.1|	-	0.0093	15.1	0.5	0.014	14.5	0.5	1.4	1	0	0	1	1	1	1	Lycopene	cyclase	protein
FAD_binding_3	PF01494.19	gi|345006264|ref|YP_004809117.1|	-	0.011	15.1	1.7	0.031	13.5	1.7	1.8	1	1	0	1	1	1	0	FAD	binding	domain
GMC_oxred_N	PF00732.19	gi|345006264|ref|YP_004809117.1|	-	0.018	14.5	0.2	0.95	8.8	0.1	2.1	2	0	0	2	2	2	0	GMC	oxidoreductase
Amino_oxidase	PF01593.24	gi|345006264|ref|YP_004809117.1|	-	0.018	14.4	0.0	0.027	13.8	0.0	1.3	1	0	0	1	1	1	0	Flavin	containing	amine	oxidoreductase
NAD_binding_9	PF13454.6	gi|345006264|ref|YP_004809117.1|	-	0.04	13.9	2.8	1.6	8.7	0.2	2.6	2	0	0	2	2	2	0	FAD-NAD(P)-binding
Thi4	PF01946.17	gi|345006264|ref|YP_004809117.1|	-	0.042	13.1	0.9	0.089	12.0	0.3	1.8	2	0	0	2	2	2	0	Thi4	family
FAD_oxidored	PF12831.7	gi|345006264|ref|YP_004809117.1|	-	0.11	11.8	1.1	0.39	10.0	1.1	1.7	1	1	0	1	1	1	0	FAD	dependent	oxidoreductase
GIDA	PF01134.22	gi|345006264|ref|YP_004809117.1|	-	1.4	7.9	4.2	2.1	7.3	2.8	1.9	2	0	0	2	2	2	0	Glucose	inhibited	division	protein	A
Aminotran_3	PF00202.21	gi|345006265|ref|YP_004809118.1|	-	1e-65	222.0	0.0	1.3e-65	221.7	0.0	1.0	1	0	0	1	1	1	1	Aminotransferase	class-III
DAO	PF01266.24	gi|345006266|ref|YP_004809119.1|	-	7.7e-53	180.3	5.0	9.1e-53	180.1	5.0	1.0	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
FAD_binding_2	PF00890.24	gi|345006266|ref|YP_004809119.1|	-	7.1e-05	22.1	7.9	0.00073	18.7	7.9	2.0	1	1	0	1	1	1	1	FAD	binding	domain
Pyr_redox_2	PF07992.14	gi|345006266|ref|YP_004809119.1|	-	8.6e-05	21.9	0.1	0.085	12.1	0.1	2.2	2	0	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_binding_8	PF13450.6	gi|345006266|ref|YP_004809119.1|	-	0.00015	21.9	0.2	0.00039	20.6	0.2	1.8	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
FAD_binding_3	PF01494.19	gi|345006266|ref|YP_004809119.1|	-	0.0015	17.9	2.1	0.07	12.4	0.0	2.3	2	0	0	2	2	2	2	FAD	binding	domain
HI0933_like	PF03486.14	gi|345006266|ref|YP_004809119.1|	-	0.0028	16.4	0.0	0.12	11.0	0.0	2.1	2	0	0	2	2	2	1	HI0933-like	protein
Pyr_redox	PF00070.27	gi|345006266|ref|YP_004809119.1|	-	0.0072	16.9	0.7	0.32	11.6	0.8	2.4	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
Trp_halogenase	PF04820.14	gi|345006266|ref|YP_004809119.1|	-	0.017	14.0	0.8	2	7.1	0.5	2.1	2	0	0	2	2	2	0	Tryptophan	halogenase
Pyr_redox_3	PF13738.6	gi|345006266|ref|YP_004809119.1|	-	0.044	13.0	0.6	0.27	10.4	0.2	2.0	2	0	0	2	2	2	0	Pyridine	nucleotide-disulphide	oxidoreductase
GMC_oxred_N	PF00732.19	gi|345006266|ref|YP_004809119.1|	-	0.052	12.9	0.0	3.5	6.9	0.0	2.1	2	0	0	2	2	2	0	GMC	oxidoreductase
FAD_oxidored	PF12831.7	gi|345006266|ref|YP_004809119.1|	-	0.068	12.5	2.4	0.25	10.7	2.4	1.8	1	1	0	1	1	1	0	FAD	dependent	oxidoreductase
NAD_binding_7	PF13241.6	gi|345006266|ref|YP_004809119.1|	-	0.12	12.8	0.2	8.1	6.9	0.0	2.3	2	0	0	2	2	2	0	Putative	NAD(P)-binding
DUF983	PF06170.12	gi|345006267|ref|YP_004809120.1|	-	0.046	14.1	2.0	0.046	14.1	2.0	2.0	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF983)
Phage_holin_4_2	PF04020.13	gi|345006267|ref|YP_004809120.1|	-	0.13	12.9	5.8	0.21	12.2	5.8	1.4	1	1	0	1	1	1	0	Mycobacterial	4	TMS	phage	holin,	superfamily	IV
DDE_Tnp_IS66	PF03050.14	gi|345006269|ref|YP_004809122.1|	-	7e-49	166.8	0.2	7e-49	166.8	0.2	2.0	2	1	0	2	2	2	1	Transposase	IS66	family
ZapB	PF06005.12	gi|345006269|ref|YP_004809122.1|	-	3e-09	37.2	6.3	9.7e-09	35.6	6.3	1.9	1	0	0	1	1	1	1	Cell	division	protein	ZapB
zf-IS66	PF13005.7	gi|345006269|ref|YP_004809122.1|	-	1.9e-05	25.0	4.3	4.5e-05	23.8	4.3	1.7	1	0	0	1	1	1	1	zinc-finger	binding	domain	of	transposase	IS66
YabA	PF06156.13	gi|345006269|ref|YP_004809122.1|	-	4.3e-05	24.1	4.2	0.00014	22.4	4.2	1.8	1	0	0	1	1	1	1	Initiation	control	protein	YabA
CASP_C	PF08172.12	gi|345006269|ref|YP_004809122.1|	-	0.00024	20.6	1.9	0.00039	19.9	1.9	1.2	1	0	0	1	1	1	1	CASP	C	terminal
JIP_LZII	PF16471.5	gi|345006269|ref|YP_004809122.1|	-	0.00056	20.0	3.4	0.0012	19.0	3.4	1.6	1	0	0	1	1	1	1	JNK-interacting	protein	leucine	zipper	II
bZIP_1	PF00170.21	gi|345006269|ref|YP_004809122.1|	-	0.0018	18.3	7.8	0.004	17.2	7.8	1.6	1	0	0	1	1	1	1	bZIP	transcription	factor
DDE_Tnp_IS240	PF13610.6	gi|345006269|ref|YP_004809122.1|	-	0.003	17.8	0.8	0.013	15.7	0.0	2.3	2	1	0	2	2	2	1	DDE	domain
SlyX	PF04102.12	gi|345006269|ref|YP_004809122.1|	-	0.0054	17.3	5.4	0.014	16.0	5.4	1.7	1	0	0	1	1	1	1	SlyX
NUDE_C	PF04880.13	gi|345006269|ref|YP_004809122.1|	-	0.013	16.0	4.4	0.034	14.6	4.4	1.6	1	0	0	1	1	1	0	NUDE	protein,	C-terminal	conserved	region
CCDC106	PF15794.5	gi|345006269|ref|YP_004809122.1|	-	0.02	14.6	3.6	0.042	13.6	3.6	1.4	1	0	0	1	1	1	0	Coiled-coil	domain-containing	protein	106
Cnn_1N	PF07989.11	gi|345006269|ref|YP_004809122.1|	-	0.026	14.7	6.4	0.056	13.6	6.4	1.5	1	0	0	1	1	1	0	Centrosomin	N-terminal	motif	1
SKA1	PF07160.12	gi|345006269|ref|YP_004809122.1|	-	0.029	14.2	0.9	0.057	13.3	0.9	1.4	1	0	0	1	1	1	0	Spindle	and	kinetochore-associated	protein	1
CENP-H	PF05837.12	gi|345006269|ref|YP_004809122.1|	-	0.03	14.7	3.3	0.072	13.5	3.3	1.6	1	0	0	1	1	1	0	Centromere	protein	H	(CENP-H)
DUF4201	PF13870.6	gi|345006269|ref|YP_004809122.1|	-	0.039	13.7	3.6	0.078	12.7	3.6	1.5	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4201)
RP-C_C	PF11800.8	gi|345006269|ref|YP_004809122.1|	-	0.04	14.0	1.2	0.082	13.0	1.2	1.5	1	0	0	1	1	1	0	Replication	protein	C	C-terminal	region
V_ATPase_I	PF01496.19	gi|345006269|ref|YP_004809122.1|	-	0.049	11.6	2.1	0.07	11.1	2.1	1.1	1	0	0	1	1	1	0	V-type	ATPase	116kDa	subunit	family
HSBP1	PF06825.12	gi|345006269|ref|YP_004809122.1|	-	0.06	13.2	0.3	0.11	12.3	0.3	1.4	1	0	0	1	1	1	0	Heat	shock	factor	binding	protein	1
XhlA	PF10779.9	gi|345006269|ref|YP_004809122.1|	-	0.067	13.4	5.8	0.18	12.0	5.8	1.7	1	0	0	1	1	1	0	Haemolysin	XhlA
FlaC_arch	PF05377.11	gi|345006269|ref|YP_004809122.1|	-	0.072	13.5	3.1	0.17	12.3	3.1	1.6	1	0	0	1	1	1	0	Flagella	accessory	protein	C	(FlaC)
TSC22	PF01166.18	gi|345006269|ref|YP_004809122.1|	-	0.087	13.1	14.9	0.11	12.8	7.5	3.3	2	1	1	3	3	3	0	TSC-22/dip/bun	family
HOOK	PF05622.12	gi|345006269|ref|YP_004809122.1|	-	0.093	10.9	3.9	0.13	10.3	3.9	1.1	1	0	0	1	1	1	0	HOOK	protein
GAS	PF13851.6	gi|345006269|ref|YP_004809122.1|	-	0.12	11.8	6.2	0.21	10.9	6.2	1.3	1	0	0	1	1	1	0	Growth-arrest	specific	micro-tubule	binding
DUF4988	PF16378.5	gi|345006269|ref|YP_004809122.1|	-	0.14	11.8	3.3	0.89	9.2	1.5	2.2	2	0	0	2	2	2	0	Domain	of	unknown	function
HALZ	PF02183.18	gi|345006269|ref|YP_004809122.1|	-	0.2	11.9	7.1	0.26	11.6	6.1	1.8	2	0	0	2	2	1	0	Homeobox	associated	leucine	zipper
EMP24_GP25L	PF01105.24	gi|345006269|ref|YP_004809122.1|	-	0.24	11.3	5.2	4.1	7.3	4.2	2.2	2	0	0	2	2	2	0	emp24/gp25L/p24	family/GOLD
Synaptobrevin	PF00957.21	gi|345006269|ref|YP_004809122.1|	-	0.25	11.1	1.7	0.43	10.4	1.7	1.3	1	0	0	1	1	1	0	Synaptobrevin
Spc24	PF08286.11	gi|345006269|ref|YP_004809122.1|	-	0.27	11.5	3.5	0.57	10.5	3.5	1.5	1	0	0	1	1	1	0	Spc24	subunit	of	Ndc80
DivIC	PF04977.15	gi|345006269|ref|YP_004809122.1|	-	0.31	10.8	8.4	0.77	9.6	8.0	1.9	1	1	0	1	1	1	0	Septum	formation	initiator
SpoVR	PF04293.13	gi|345006269|ref|YP_004809122.1|	-	0.35	9.5	4.7	0.55	8.9	4.7	1.2	1	0	0	1	1	1	0	SpoVR	like	protein
Shugoshin_N	PF07558.11	gi|345006269|ref|YP_004809122.1|	-	0.62	10.0	6.8	0.15	11.9	2.5	2.0	1	1	1	2	2	2	0	Shugoshin	N-terminal	coiled-coil	region
Jnk-SapK_ap_N	PF09744.9	gi|345006269|ref|YP_004809122.1|	-	0.68	10.1	7.3	1.9	8.7	7.3	1.7	1	0	0	1	1	1	0	JNK_SAPK-associated	protein-1
Chibby	PF14645.6	gi|345006269|ref|YP_004809122.1|	-	0.7	10.3	4.1	1.7	9.1	4.1	1.6	1	0	0	1	1	1	0	Chibby	family
APG6_N	PF17675.1	gi|345006269|ref|YP_004809122.1|	-	0.77	10.3	9.2	1.5	9.3	9.2	1.5	1	0	0	1	1	1	0	Apg6	coiled-coil	region
ADIP	PF11559.8	gi|345006269|ref|YP_004809122.1|	-	0.78	9.8	7.1	1.7	8.7	7.1	1.5	1	0	0	1	1	1	0	Afadin-	and	alpha	-actinin-Binding
Prefoldin_2	PF01920.20	gi|345006269|ref|YP_004809122.1|	-	0.92	9.5	8.3	1.8	8.6	8.3	1.4	1	0	0	1	1	1	0	Prefoldin	subunit
bZIP_2	PF07716.15	gi|345006269|ref|YP_004809122.1|	-	1.2	9.3	14.7	8.7	6.5	6.5	2.6	1	1	1	2	2	2	0	Basic	region	leucine	zipper
GIT_CC	PF16559.5	gi|345006269|ref|YP_004809122.1|	-	1.2	9.0	5.9	2.4	8.1	5.9	1.5	1	0	0	1	1	1	0	GIT	coiled-coil	Rho	guanine	nucleotide	exchange	factor
GrpE	PF01025.19	gi|345006269|ref|YP_004809122.1|	-	1.2	8.8	5.5	2.3	7.9	5.5	1.4	1	0	0	1	1	1	0	GrpE
DUF2205	PF10224.9	gi|345006269|ref|YP_004809122.1|	-	1.5	8.9	5.6	3.6	7.7	5.6	1.6	1	0	0	1	1	1	0	Short	coiled-coil	protein
Astro_capsid_p	PF12226.8	gi|345006269|ref|YP_004809122.1|	-	1.5	7.9	4.8	2.3	7.3	4.8	1.2	1	0	0	1	1	1	0	Turkey	astrovirus	capsid	protein
DUF3552	PF12072.8	gi|345006269|ref|YP_004809122.1|	-	2.1	7.7	7.5	3.7	6.9	7.5	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3552)
DUF3450	PF11932.8	gi|345006269|ref|YP_004809122.1|	-	2.3	7.4	8.2	0.46	9.8	3.0	2.3	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF3450)
NRBF2	PF08961.10	gi|345006269|ref|YP_004809122.1|	-	2.4	7.7	14.9	0.031	13.9	7.5	1.6	2	0	0	2	2	1	0	Nuclear	receptor-binding	factor	2,	autophagy	regulator
UPF0242	PF06785.11	gi|345006269|ref|YP_004809122.1|	-	7.3	6.6	7.8	2.4	8.2	5.0	1.6	2	0	0	2	2	1	0	Uncharacterised	protein	family	(UPF0242)	N-terminus
COX5B	PF01215.19	gi|345006270|ref|YP_004809123.1|	-	0.14	11.9	0.0	0.18	11.5	0.0	1.2	1	0	0	1	1	1	0	Cytochrome	c	oxidase	subunit	Vb
DUF2391	PF09622.10	gi|345006271|ref|YP_004809124.1|	-	8.3e-80	268.0	9.2	9.6e-80	267.8	9.2	1.0	1	0	0	1	1	1	1	Putative	integral	membrane	protein	(DUF2391)
DUF1435	PF07256.12	gi|345006271|ref|YP_004809124.1|	-	0.009	16.1	0.7	0.033	14.3	0.1	2.3	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF1435)
DUF2721	PF11026.8	gi|345006271|ref|YP_004809124.1|	-	0.13	12.1	0.0	0.13	12.1	0.0	2.9	3	1	0	3	3	3	0	Protein	of	unknown	function	(DUF2721)
T2SSE	PF00437.20	gi|345006272|ref|YP_004809125.1|	-	1.2e-27	96.7	0.1	1.8e-27	96.1	0.1	1.2	1	0	0	1	1	1	1	Type	II/IV	secretion	system	protein
AAA_23	PF13476.6	gi|345006272|ref|YP_004809125.1|	-	0.0027	18.2	0.0	0.0058	17.2	0.0	1.5	1	0	0	1	1	1	1	AAA	domain
AAA_29	PF13555.6	gi|345006272|ref|YP_004809125.1|	-	0.0034	17.1	0.0	0.0069	16.1	0.0	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_7	PF12775.7	gi|345006272|ref|YP_004809125.1|	-	0.007	15.9	0.0	0.013	15.0	0.0	1.3	1	0	0	1	1	1	1	P-loop	containing	dynein	motor	region
RsgA_GTPase	PF03193.16	gi|345006272|ref|YP_004809125.1|	-	0.011	15.6	0.0	0.023	14.6	0.0	1.4	1	0	0	1	1	1	0	RsgA	GTPase
AAA_16	PF13191.6	gi|345006272|ref|YP_004809125.1|	-	0.016	15.6	0.0	0.078	13.4	0.0	2.3	2	0	0	2	2	2	0	AAA	ATPase	domain
UDPG_MGDP_dh	PF00984.19	gi|345006272|ref|YP_004809125.1|	-	0.047	13.9	0.0	0.7	10.1	0.0	2.2	2	0	0	2	2	2	0	UDP-glucose/GDP-mannose	dehydrogenase	family,	central	domain
AAA_22	PF13401.6	gi|345006272|ref|YP_004809125.1|	-	0.06	13.6	0.1	0.15	12.3	0.1	1.8	1	1	0	1	1	1	0	AAA	domain
AAA	PF00004.29	gi|345006272|ref|YP_004809125.1|	-	0.18	12.2	0.6	0.61	10.5	0.6	2.0	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
T2SSF	PF00482.23	gi|345006273|ref|YP_004809126.1|	-	1.2e-18	67.2	2.2	1.2e-08	34.9	0.4	2.6	2	0	0	2	2	2	2	Type	II	secretion	system	(T2SS),	protein	F
HALZ	PF02183.18	gi|345006273|ref|YP_004809126.1|	-	0.13	12.5	0.0	0.26	11.6	0.0	1.5	1	0	0	1	1	1	0	Homeobox	associated	leucine	zipper
Pilin_N	PF07790.11	gi|345006274|ref|YP_004809127.1|	-	0.00024	22.0	0.3	0.0004	21.2	0.3	1.5	1	0	0	1	1	1	1	Archaeal	Type	IV	pilin,	N-terminal
TcdA_TcdB_pore	PF12920.7	gi|345006274|ref|YP_004809127.1|	-	0.24	9.6	0.9	0.35	9.1	0.9	1.1	1	0	0	1	1	1	0	TcdA/TcdB	pore	forming	domain
Putative_PNPOx	PF01243.20	gi|345006276|ref|YP_004809129.1|	-	0.053	13.7	0.1	0.11	12.7	0.1	1.5	1	0	0	1	1	1	0	Pyridoxamine	5'-phosphate	oxidase
PKD	PF00801.20	gi|345006279|ref|YP_004809132.1|	-	0.0021	17.9	1.4	0.92	9.4	0.0	2.6	3	0	0	3	3	3	2	PKD	domain
Y_Y_Y	PF07495.13	gi|345006279|ref|YP_004809132.1|	-	0.14	12.1	0.0	0.28	11.2	0.0	1.4	1	0	0	1	1	1	0	Y_Y_Y	domain
DUF5392	PF17370.2	gi|345006281|ref|YP_004809134.1|	-	0.1	12.7	1.8	2.6	8.1	0.1	2.0	1	1	1	2	2	2	0	Family	of	unknown	function	(DUF5392)
DPM3	PF08285.11	gi|345006281|ref|YP_004809134.1|	-	0.21	11.8	2.4	0.27	11.5	2.4	1.1	1	0	0	1	1	1	0	Dolichol-phosphate	mannosyltransferase	subunit	3	(DPM3)
MFS_1	PF07690.16	gi|345006282|ref|YP_004809135.1|	-	1.8e-41	142.3	65.3	1.7e-33	116.0	35.1	2.0	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
MFS_1_like	PF12832.7	gi|345006282|ref|YP_004809135.1|	-	0.014	14.2	11.8	0.052	12.4	7.6	3.1	1	1	1	3	3	3	0	MFS_1	like	family
VIT1	PF01988.19	gi|345006282|ref|YP_004809135.1|	-	0.015	15.2	6.0	0.015	15.2	6.0	3.7	1	1	4	5	5	5	0	VIT	family
Sugar_tr	PF00083.24	gi|345006282|ref|YP_004809135.1|	-	3.1	6.5	29.4	0.015	14.2	9.9	3.3	2	1	1	3	3	3	0	Sugar	(and	other)	transporter
CbiA	PF01656.23	gi|345006284|ref|YP_004809137.1|	-	2e-17	63.4	0.0	4e-17	62.5	0.0	1.5	1	1	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
ParA	PF10609.9	gi|345006284|ref|YP_004809137.1|	-	2e-13	50.4	0.7	1e-07	31.7	0.6	2.7	2	1	0	2	2	2	2	NUBPL	iron-transfer	P-loop	NTPase
AAA_31	PF13614.6	gi|345006284|ref|YP_004809137.1|	-	1.1e-11	45.0	0.0	1.6e-11	44.4	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
Fer4_NifH	PF00142.18	gi|345006284|ref|YP_004809137.1|	-	6.8e-08	32.3	0.0	0.00038	20.0	0.0	2.1	2	0	0	2	2	2	2	4Fe-4S	iron	sulfur	cluster	binding	proteins,	NifH/frxC	family
CBP_BcsQ	PF06564.12	gi|345006284|ref|YP_004809137.1|	-	1e-06	28.4	0.1	1e-06	28.4	0.1	1.4	2	0	0	2	2	2	1	Cellulose	biosynthesis	protein	BcsQ
ArsA_ATPase	PF02374.15	gi|345006284|ref|YP_004809137.1|	-	5.4e-05	22.5	0.7	0.00048	19.4	0.6	2.0	2	0	0	2	2	2	1	Anion-transporting	ATPase
AAA_26	PF13500.6	gi|345006284|ref|YP_004809137.1|	-	0.00023	21.1	0.2	0.012	15.5	0.0	2.2	2	0	0	2	2	2	1	AAA	domain
MipZ	PF09140.11	gi|345006284|ref|YP_004809137.1|	-	0.0038	16.5	0.4	0.014	14.7	0.4	1.8	1	1	0	1	1	1	1	ATPase	MipZ
VirC1	PF07015.11	gi|345006284|ref|YP_004809137.1|	-	0.028	13.7	0.4	0.042	13.1	0.4	1.3	1	0	0	1	1	1	0	VirC1	protein
SKI	PF01202.22	gi|345006284|ref|YP_004809137.1|	-	0.036	14.2	0.2	5.2	7.2	0.1	2.4	2	1	0	2	2	2	0	Shikimate	kinase
AAA_24	PF13479.6	gi|345006284|ref|YP_004809137.1|	-	0.053	13.2	0.0	0.071	12.8	0.0	1.2	1	0	0	1	1	1	0	AAA	domain
CLP1_P	PF16575.5	gi|345006284|ref|YP_004809137.1|	-	0.24	11.2	0.1	0.37	10.6	0.1	1.3	1	0	0	1	1	1	0	mRNA	cleavage	and	polyadenylation	factor	CLP1	P-loop
AAA_25	PF13481.6	gi|345006284|ref|YP_004809137.1|	-	1	8.9	5.0	0.22	11.1	0.5	2.1	3	1	0	3	3	3	0	AAA	domain
Aminotran_1_2	PF00155.21	gi|345006285|ref|YP_004809138.1|	-	3.8e-15	55.9	0.0	5.2e-15	55.5	0.0	1.2	1	0	0	1	1	1	1	Aminotransferase	class	I	and	II
Peptidase_M19	PF01244.21	gi|345006286|ref|YP_004809139.1|	-	1.3e-86	290.7	0.0	1.5e-86	290.5	0.0	1.0	1	0	0	1	1	1	1	Membrane	dipeptidase	(Peptidase	family	M19)
UDG	PF03167.19	gi|345006287|ref|YP_004809140.1|	-	7.5e-38	130.0	0.0	9.1e-38	129.7	0.0	1.0	1	0	0	1	1	1	1	Uracil	DNA	glycosylase	superfamily
Epimerase_2	PF02350.19	gi|345006287|ref|YP_004809140.1|	-	0.078	11.8	0.0	0.11	11.4	0.0	1.2	1	0	0	1	1	1	0	UDP-N-acetylglucosamine	2-epimerase
GATase	PF00117.28	gi|345006288|ref|YP_004809141.1|	-	2e-21	76.6	0.0	2.5e-21	76.3	0.0	1.1	1	0	0	1	1	1	1	Glutamine	amidotransferase	class-I
GATase_3	PF07685.14	gi|345006288|ref|YP_004809141.1|	-	4.3e-08	33.0	0.0	6.9e-08	32.3	0.0	1.3	1	1	0	1	1	1	1	CobB/CobQ-like	glutamine	amidotransferase	domain
SNO	PF01174.19	gi|345006288|ref|YP_004809141.1|	-	5.8e-06	26.3	0.0	0.0027	17.6	0.0	2.1	2	0	0	2	2	2	2	SNO	glutamine	amidotransferase	family
Peptidase_C26	PF07722.13	gi|345006288|ref|YP_004809141.1|	-	5.7e-05	23.0	0.1	0.031	14.0	0.1	2.3	2	1	0	2	2	2	2	Peptidase	C26
DJ-1_PfpI	PF01965.24	gi|345006288|ref|YP_004809141.1|	-	0.0012	18.7	0.0	0.0027	17.5	0.0	1.7	1	1	0	1	1	1	1	DJ-1/PfpI	family
GATase_5	PF13507.6	gi|345006288|ref|YP_004809141.1|	-	0.042	12.9	0.0	0.33	10.0	0.0	2.2	2	1	0	2	2	2	0	CobB/CobQ-like	glutamine	amidotransferase	domain
DDE_Tnp_IS66	PF03050.14	gi|345006290|ref|YP_004809143.1|	-	7e-49	166.8	0.2	7e-49	166.8	0.2	2.0	2	1	0	2	2	2	1	Transposase	IS66	family
ZapB	PF06005.12	gi|345006290|ref|YP_004809143.1|	-	3e-09	37.2	6.3	9.7e-09	35.6	6.3	1.9	1	0	0	1	1	1	1	Cell	division	protein	ZapB
zf-IS66	PF13005.7	gi|345006290|ref|YP_004809143.1|	-	1.9e-05	25.0	4.3	4.5e-05	23.8	4.3	1.7	1	0	0	1	1	1	1	zinc-finger	binding	domain	of	transposase	IS66
YabA	PF06156.13	gi|345006290|ref|YP_004809143.1|	-	4.3e-05	24.1	4.2	0.00014	22.4	4.2	1.8	1	0	0	1	1	1	1	Initiation	control	protein	YabA
CASP_C	PF08172.12	gi|345006290|ref|YP_004809143.1|	-	0.00024	20.6	1.9	0.00039	19.9	1.9	1.2	1	0	0	1	1	1	1	CASP	C	terminal
JIP_LZII	PF16471.5	gi|345006290|ref|YP_004809143.1|	-	0.00056	20.0	3.4	0.0012	19.0	3.4	1.6	1	0	0	1	1	1	1	JNK-interacting	protein	leucine	zipper	II
bZIP_1	PF00170.21	gi|345006290|ref|YP_004809143.1|	-	0.0018	18.3	7.8	0.004	17.2	7.8	1.6	1	0	0	1	1	1	1	bZIP	transcription	factor
DDE_Tnp_IS240	PF13610.6	gi|345006290|ref|YP_004809143.1|	-	0.003	17.8	0.8	0.013	15.7	0.0	2.3	2	1	0	2	2	2	1	DDE	domain
SlyX	PF04102.12	gi|345006290|ref|YP_004809143.1|	-	0.0054	17.3	5.4	0.014	16.0	5.4	1.7	1	0	0	1	1	1	1	SlyX
NUDE_C	PF04880.13	gi|345006290|ref|YP_004809143.1|	-	0.013	16.0	4.4	0.034	14.6	4.4	1.6	1	0	0	1	1	1	0	NUDE	protein,	C-terminal	conserved	region
CCDC106	PF15794.5	gi|345006290|ref|YP_004809143.1|	-	0.02	14.6	3.6	0.042	13.6	3.6	1.4	1	0	0	1	1	1	0	Coiled-coil	domain-containing	protein	106
Cnn_1N	PF07989.11	gi|345006290|ref|YP_004809143.1|	-	0.026	14.7	6.4	0.056	13.6	6.4	1.5	1	0	0	1	1	1	0	Centrosomin	N-terminal	motif	1
SKA1	PF07160.12	gi|345006290|ref|YP_004809143.1|	-	0.029	14.2	0.9	0.057	13.3	0.9	1.4	1	0	0	1	1	1	0	Spindle	and	kinetochore-associated	protein	1
CENP-H	PF05837.12	gi|345006290|ref|YP_004809143.1|	-	0.03	14.7	3.3	0.072	13.5	3.3	1.6	1	0	0	1	1	1	0	Centromere	protein	H	(CENP-H)
DUF4201	PF13870.6	gi|345006290|ref|YP_004809143.1|	-	0.039	13.7	3.6	0.078	12.7	3.6	1.5	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4201)
RP-C_C	PF11800.8	gi|345006290|ref|YP_004809143.1|	-	0.04	14.0	1.2	0.082	13.0	1.2	1.5	1	0	0	1	1	1	0	Replication	protein	C	C-terminal	region
V_ATPase_I	PF01496.19	gi|345006290|ref|YP_004809143.1|	-	0.049	11.6	2.1	0.07	11.1	2.1	1.1	1	0	0	1	1	1	0	V-type	ATPase	116kDa	subunit	family
HSBP1	PF06825.12	gi|345006290|ref|YP_004809143.1|	-	0.06	13.2	0.3	0.11	12.3	0.3	1.4	1	0	0	1	1	1	0	Heat	shock	factor	binding	protein	1
XhlA	PF10779.9	gi|345006290|ref|YP_004809143.1|	-	0.067	13.4	5.8	0.18	12.0	5.8	1.7	1	0	0	1	1	1	0	Haemolysin	XhlA
FlaC_arch	PF05377.11	gi|345006290|ref|YP_004809143.1|	-	0.072	13.5	3.1	0.17	12.3	3.1	1.6	1	0	0	1	1	1	0	Flagella	accessory	protein	C	(FlaC)
TSC22	PF01166.18	gi|345006290|ref|YP_004809143.1|	-	0.087	13.1	14.9	0.11	12.8	7.5	3.3	2	1	1	3	3	3	0	TSC-22/dip/bun	family
HOOK	PF05622.12	gi|345006290|ref|YP_004809143.1|	-	0.093	10.9	3.9	0.13	10.3	3.9	1.1	1	0	0	1	1	1	0	HOOK	protein
GAS	PF13851.6	gi|345006290|ref|YP_004809143.1|	-	0.12	11.8	6.2	0.21	10.9	6.2	1.3	1	0	0	1	1	1	0	Growth-arrest	specific	micro-tubule	binding
DUF4988	PF16378.5	gi|345006290|ref|YP_004809143.1|	-	0.14	11.8	3.3	0.89	9.2	1.5	2.2	2	0	0	2	2	2	0	Domain	of	unknown	function
HALZ	PF02183.18	gi|345006290|ref|YP_004809143.1|	-	0.2	11.9	7.1	0.26	11.6	6.1	1.8	2	0	0	2	2	1	0	Homeobox	associated	leucine	zipper
EMP24_GP25L	PF01105.24	gi|345006290|ref|YP_004809143.1|	-	0.24	11.3	5.2	4.1	7.3	4.2	2.2	2	0	0	2	2	2	0	emp24/gp25L/p24	family/GOLD
Synaptobrevin	PF00957.21	gi|345006290|ref|YP_004809143.1|	-	0.25	11.1	1.7	0.43	10.4	1.7	1.3	1	0	0	1	1	1	0	Synaptobrevin
Spc24	PF08286.11	gi|345006290|ref|YP_004809143.1|	-	0.27	11.5	3.5	0.57	10.5	3.5	1.5	1	0	0	1	1	1	0	Spc24	subunit	of	Ndc80
DivIC	PF04977.15	gi|345006290|ref|YP_004809143.1|	-	0.31	10.8	8.4	0.77	9.6	8.0	1.9	1	1	0	1	1	1	0	Septum	formation	initiator
SpoVR	PF04293.13	gi|345006290|ref|YP_004809143.1|	-	0.35	9.5	4.7	0.55	8.9	4.7	1.2	1	0	0	1	1	1	0	SpoVR	like	protein
Shugoshin_N	PF07558.11	gi|345006290|ref|YP_004809143.1|	-	0.62	10.0	6.8	0.15	11.9	2.5	2.0	1	1	1	2	2	2	0	Shugoshin	N-terminal	coiled-coil	region
Jnk-SapK_ap_N	PF09744.9	gi|345006290|ref|YP_004809143.1|	-	0.68	10.1	7.3	1.9	8.7	7.3	1.7	1	0	0	1	1	1	0	JNK_SAPK-associated	protein-1
Chibby	PF14645.6	gi|345006290|ref|YP_004809143.1|	-	0.7	10.3	4.1	1.7	9.1	4.1	1.6	1	0	0	1	1	1	0	Chibby	family
APG6_N	PF17675.1	gi|345006290|ref|YP_004809143.1|	-	0.77	10.3	9.2	1.5	9.3	9.2	1.5	1	0	0	1	1	1	0	Apg6	coiled-coil	region
ADIP	PF11559.8	gi|345006290|ref|YP_004809143.1|	-	0.78	9.8	7.1	1.7	8.7	7.1	1.5	1	0	0	1	1	1	0	Afadin-	and	alpha	-actinin-Binding
Prefoldin_2	PF01920.20	gi|345006290|ref|YP_004809143.1|	-	0.92	9.5	8.3	1.8	8.6	8.3	1.4	1	0	0	1	1	1	0	Prefoldin	subunit
bZIP_2	PF07716.15	gi|345006290|ref|YP_004809143.1|	-	1.2	9.3	14.7	8.7	6.5	6.5	2.6	1	1	1	2	2	2	0	Basic	region	leucine	zipper
GIT_CC	PF16559.5	gi|345006290|ref|YP_004809143.1|	-	1.2	9.0	5.9	2.4	8.1	5.9	1.5	1	0	0	1	1	1	0	GIT	coiled-coil	Rho	guanine	nucleotide	exchange	factor
GrpE	PF01025.19	gi|345006290|ref|YP_004809143.1|	-	1.2	8.8	5.5	2.3	7.9	5.5	1.4	1	0	0	1	1	1	0	GrpE
DUF2205	PF10224.9	gi|345006290|ref|YP_004809143.1|	-	1.5	8.9	5.6	3.6	7.7	5.6	1.6	1	0	0	1	1	1	0	Short	coiled-coil	protein
Astro_capsid_p	PF12226.8	gi|345006290|ref|YP_004809143.1|	-	1.5	7.9	4.8	2.3	7.3	4.8	1.2	1	0	0	1	1	1	0	Turkey	astrovirus	capsid	protein
DUF3552	PF12072.8	gi|345006290|ref|YP_004809143.1|	-	2.1	7.7	7.5	3.7	6.9	7.5	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3552)
DUF3450	PF11932.8	gi|345006290|ref|YP_004809143.1|	-	2.3	7.4	8.2	0.46	9.8	3.0	2.3	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF3450)
NRBF2	PF08961.10	gi|345006290|ref|YP_004809143.1|	-	2.4	7.7	14.9	0.031	13.9	7.5	1.6	2	0	0	2	2	1	0	Nuclear	receptor-binding	factor	2,	autophagy	regulator
UPF0242	PF06785.11	gi|345006290|ref|YP_004809143.1|	-	7.3	6.6	7.8	2.4	8.2	5.0	1.6	2	0	0	2	2	1	0	Uncharacterised	protein	family	(UPF0242)	N-terminus
DUF2556	PF10831.8	gi|345006291|ref|YP_004809144.1|	-	0.048	13.6	1.4	0.048	13.6	1.4	1.7	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2556)
DUF4491	PF14898.6	gi|345006291|ref|YP_004809144.1|	-	0.05	14.0	1.3	0.055	13.9	1.3	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4491)
DUF4231	PF14015.6	gi|345006291|ref|YP_004809144.1|	-	0.46	11.0	3.6	0.53	10.8	3.6	1.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF4231)
YrhC	PF14143.6	gi|345006291|ref|YP_004809144.1|	-	1.2	9.3	4.7	2	8.5	4.7	1.4	1	1	0	1	1	1	0	YrhC-like	protein
Deltameth_res	PF16020.5	gi|345006291|ref|YP_004809144.1|	-	1.8	8.5	4.7	1.5	8.7	0.3	2.0	2	0	0	2	2	2	0	Deltamethrin	resistance
DUF4131	PF13567.6	gi|345006291|ref|YP_004809144.1|	-	6.4	6.4	7.2	4.3	7.0	1.6	1.7	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4131)
MFS_1	PF07690.16	gi|345006293|ref|YP_004809146.1|	-	1.6e-09	37.2	63.8	2.2e-08	33.4	34.0	2.1	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
HAD_2	PF13419.6	gi|345006294|ref|YP_004809147.1|	-	9.9e-20	71.4	0.0	1.2e-19	71.1	0.0	1.1	1	0	0	1	1	1	1	Haloacid	dehalogenase-like	hydrolase
Hydrolase	PF00702.26	gi|345006294|ref|YP_004809147.1|	-	2.7e-11	44.2	0.2	9.2e-10	39.2	0.2	2.1	1	1	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Hydrolase_like	PF13242.6	gi|345006294|ref|YP_004809147.1|	-	3.6e-10	39.7	0.0	9.6e-10	38.4	0.0	1.7	1	0	0	1	1	1	1	HAD-hyrolase-like
HAD	PF12710.7	gi|345006294|ref|YP_004809147.1|	-	4.4e-06	27.2	1.1	6.7e-06	26.6	1.1	1.3	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Hydrolase_6	PF13344.6	gi|345006294|ref|YP_004809147.1|	-	0.0067	16.5	0.1	0.08	13.1	0.1	2.4	1	1	0	1	1	1	1	Haloacid	dehalogenase-like	hydrolase
Put_Phosphatase	PF06888.12	gi|345006294|ref|YP_004809147.1|	-	0.014	14.8	0.1	0.049	13.0	0.0	1.8	3	0	0	3	3	3	0	Putative	Phosphatase
Spore_III_AF	PF09581.10	gi|345006294|ref|YP_004809147.1|	-	0.12	12.4	0.3	0.19	11.7	0.3	1.3	1	0	0	1	1	1	0	Stage	III	sporulation	protein	AF	(Spore_III_AF)
PDT	PF00800.18	gi|345006295|ref|YP_004809148.1|	-	6.1e-50	169.6	0.1	7.4e-50	169.3	0.1	1.1	1	0	0	1	1	1	1	Prephenate	dehydratase
ACT	PF01842.25	gi|345006295|ref|YP_004809148.1|	-	6.5e-07	29.0	0.0	7.7e-06	25.6	0.0	2.4	2	0	0	2	2	2	1	ACT	domain
HEAT_2	PF13646.6	gi|345006295|ref|YP_004809148.1|	-	0.19	12.1	2.0	1.1	9.7	0.1	2.8	1	1	2	3	3	3	0	HEAT	repeats
PAS_9	PF13426.7	gi|345006296|ref|YP_004809149.1|	-	3.1e-44	149.5	0.1	1.6e-14	54.0	0.0	3.8	3	0	0	3	3	3	3	PAS	domain
PAS_4	PF08448.10	gi|345006296|ref|YP_004809149.1|	-	5.7e-35	119.9	6.7	7.3e-13	48.7	0.0	4.2	4	0	0	4	4	4	3	PAS	fold
PAS	PF00989.25	gi|345006296|ref|YP_004809149.1|	-	8.2e-33	112.8	0.1	2.1e-12	47.0	0.0	3.6	3	0	0	3	3	3	3	PAS	fold
PAS_3	PF08447.12	gi|345006296|ref|YP_004809149.1|	-	2e-25	88.9	0.6	2.5e-08	34.1	0.0	4.0	4	0	0	4	4	4	3	PAS	fold
Response_reg	PF00072.24	gi|345006296|ref|YP_004809149.1|	-	1e-19	70.7	0.0	3.6e-19	69.0	0.0	2.0	1	0	0	1	1	1	1	Response	regulator	receiver	domain
GAF_2	PF13185.6	gi|345006296|ref|YP_004809149.1|	-	1.6e-14	54.4	0.3	7.6e-14	52.2	0.1	2.4	2	0	0	2	2	2	1	GAF	domain
PAS_8	PF13188.7	gi|345006296|ref|YP_004809149.1|	-	1.4e-12	47.3	0.0	0.00015	21.7	0.0	3.6	3	0	0	3	3	3	2	PAS	domain
GAF_3	PF13492.6	gi|345006296|ref|YP_004809149.1|	-	1.7e-09	38.1	0.0	4.7e-09	36.7	0.0	1.7	1	0	0	1	1	1	1	GAF	domain
HisKA	PF00512.25	gi|345006296|ref|YP_004809149.1|	-	1.2e-08	34.9	2.5	1.2e-08	34.9	2.5	3.0	3	0	0	3	3	2	1	His	Kinase	A	(phospho-acceptor)	domain
HATPase_c	PF02518.26	gi|345006296|ref|YP_004809149.1|	-	7.4e-08	32.9	0.7	1.6e-06	28.6	0.1	3.1	2	1	0	2	2	2	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
GAF	PF01590.26	gi|345006296|ref|YP_004809149.1|	-	0.00017	22.2	0.0	0.00041	21.0	0.0	1.6	1	0	0	1	1	1	1	GAF	domain
PAS_7	PF12860.7	gi|345006296|ref|YP_004809149.1|	-	0.00055	20.1	0.1	2.7	8.2	0.0	5.1	5	0	0	5	5	5	1	PAS	fold
OKR_DC_1_N	PF03709.15	gi|345006296|ref|YP_004809149.1|	-	0.0091	16.3	0.2	0.071	13.4	0.0	2.4	2	0	0	2	2	2	1	Orn/Lys/Arg	decarboxylase,	N-terminal	domain
Phage_min_cap2	PF06152.11	gi|345006296|ref|YP_004809149.1|	-	0.046	12.6	0.1	0.1	11.5	0.1	1.5	1	0	0	1	1	1	0	Phage	minor	capsid	protein	2
KxDL	PF10241.9	gi|345006296|ref|YP_004809149.1|	-	0.062	13.6	0.1	0.17	12.2	0.1	1.7	1	0	0	1	1	1	0	Uncharacterized	conserved	protein
HSP20	PF00011.21	gi|345006297|ref|YP_004809150.1|	-	1.5e-22	79.6	0.1	1.9e-22	79.3	0.1	1.2	1	0	0	1	1	1	1	Hsp20/alpha	crystallin	family
ArsA_HSP20	PF17886.1	gi|345006297|ref|YP_004809150.1|	-	9.9e-14	50.7	0.0	1.5e-13	50.1	0.0	1.3	1	0	0	1	1	1	1	HSP20-like	domain	found	in	ArsA
GvpH	PF05455.11	gi|345006297|ref|YP_004809150.1|	-	0.021	14.9	0.8	0.021	14.9	0.8	2.3	1	1	1	2	2	2	0	GvpH
HSP20	PF00011.21	gi|345006298|ref|YP_004809151.1|	-	8.3e-20	70.8	0.1	1e-19	70.5	0.1	1.1	1	0	0	1	1	1	1	Hsp20/alpha	crystallin	family
ArsA_HSP20	PF17886.1	gi|345006298|ref|YP_004809151.1|	-	1.9e-15	56.2	0.0	7e-15	54.3	0.0	1.8	1	1	1	2	2	2	2	HSP20-like	domain	found	in	ArsA
GvpH	PF05455.11	gi|345006298|ref|YP_004809151.1|	-	9.5e-06	25.8	4.1	9.5e-06	25.8	4.1	1.6	1	1	1	2	2	2	1	GvpH
PIH1_CS	PF18201.1	gi|345006298|ref|YP_004809151.1|	-	0.15	12.5	0.0	0.24	11.8	0.0	1.4	1	1	0	1	1	1	0	PIH1	CS-like	domain
tRNA-synt_1	PF00133.22	gi|345006301|ref|YP_004809154.1|	-	2.7e-52	177.8	0.0	4.8e-40	137.4	0.0	3.2	2	1	0	2	2	2	2	tRNA	synthetases	class	I	(I,	L,	M	and	V)
tRNA-synt_1g	PF09334.11	gi|345006301|ref|YP_004809154.1|	-	1.8e-23	83.0	0.9	1.8e-10	40.2	0.0	3.1	2	1	0	2	2	2	2	tRNA	synthetases	class	I	(M)
Anticodon_1	PF08264.13	gi|345006301|ref|YP_004809154.1|	-	7.2e-18	65.0	0.0	1.5e-17	63.9	0.0	1.5	1	0	0	1	1	1	1	Anticodon-binding	domain	of	tRNA
tRNA-synt_1_2	PF13603.6	gi|345006301|ref|YP_004809154.1|	-	6.3e-08	32.4	0.0	1.2e-07	31.4	0.0	1.4	1	0	0	1	1	1	1	Leucyl-tRNA	synthetase,	Domain	2
tRNA-synt_1e	PF01406.19	gi|345006301|ref|YP_004809154.1|	-	3.8e-05	23.2	0.0	0.018	14.4	0.0	2.3	2	0	0	2	2	2	2	tRNA	synthetases	class	I	(C)	catalytic	domain
tRNA-synt_1f	PF01921.18	gi|345006301|ref|YP_004809154.1|	-	0.0014	17.6	0.0	0.031	13.2	0.0	2.2	2	0	0	2	2	2	1	tRNA	synthetases	class	I	(K)
tRNA-synt_1c	PF00749.21	gi|345006301|ref|YP_004809154.1|	-	0.25	10.2	0.6	0.42	9.4	0.1	1.6	2	0	0	2	2	2	0	tRNA	synthetases	class	I	(E	and	Q),	catalytic	domain
CitMHS	PF03600.16	gi|345006302|ref|YP_004809155.1|	-	8e-63	212.4	9.6	1.3e-61	208.4	0.2	2.0	1	1	1	2	2	2	2	Citrate	transporter
Na_sulph_symp	PF00939.19	gi|345006302|ref|YP_004809155.1|	-	7.9e-21	74.6	37.1	9.7e-13	48.0	15.9	3.0	2	1	0	2	2	2	2	Sodium:sulfate	symporter	transmembrane	region
TrkA_C	PF02080.21	gi|345006302|ref|YP_004809155.1|	-	3.2e-20	71.7	1.5	1.1e-10	41.1	0.1	2.7	2	0	0	2	2	2	2	TrkA-C	domain
MatC_N	PF07158.11	gi|345006302|ref|YP_004809155.1|	-	0.29	11.2	30.2	0.016	15.3	4.7	2.4	2	0	0	2	2	2	0	Dicarboxylate	carrier	protein	MatC	N-terminus
OCD_Mu_crystall	PF02423.15	gi|345006303|ref|YP_004809156.1|	-	1.3e-90	303.6	0.3	1.4e-90	303.4	0.3	1.0	1	0	0	1	1	1	1	Ornithine	cyclodeaminase/mu-crystallin	family
DeoC	PF01791.9	gi|345006304|ref|YP_004809157.1|	-	4.9e-46	157.2	0.2	6.2e-46	156.9	0.2	1.1	1	0	0	1	1	1	1	DeoC/LacD	family	aldolase
AP_endonuc_2	PF01261.24	gi|345006304|ref|YP_004809157.1|	-	7.8e-06	25.5	0.6	2.1e-05	24.1	0.2	1.9	2	1	0	2	2	2	1	Xylose	isomerase-like	TIM	barrel
PucR	PF07905.11	gi|345006304|ref|YP_004809157.1|	-	0.0069	16.6	0.0	0.11	12.8	0.0	2.3	2	0	0	2	2	2	1	Purine	catabolism	regulatory	protein-like	family
DUF561	PF04481.12	gi|345006304|ref|YP_004809157.1|	-	0.13	11.4	0.1	0.31	10.2	0.0	1.7	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF561)
Trp_syntA	PF00290.20	gi|345006305|ref|YP_004809158.1|	-	2.5e-87	292.0	0.0	3.3e-87	291.6	0.0	1.1	1	0	0	1	1	1	1	Tryptophan	synthase	alpha	chain
His_biosynth	PF00977.21	gi|345006305|ref|YP_004809158.1|	-	5.8e-05	22.7	0.6	0.00016	21.2	0.8	1.6	2	0	0	2	2	2	1	Histidine	biosynthesis	protein
PcrB	PF01884.17	gi|345006305|ref|YP_004809158.1|	-	0.00022	20.8	0.5	0.0098	15.4	0.4	2.2	2	0	0	2	2	2	1	PcrB	family
ThiG	PF05690.14	gi|345006305|ref|YP_004809158.1|	-	0.0056	16.0	0.2	0.0089	15.4	0.2	1.4	1	0	0	1	1	1	1	Thiazole	biosynthesis	protein	ThiG
DHO_dh	PF01180.21	gi|345006305|ref|YP_004809158.1|	-	0.057	12.6	0.1	0.082	12.1	0.1	1.1	1	0	0	1	1	1	0	Dihydroorotate	dehydrogenase
PALP	PF00291.25	gi|345006306|ref|YP_004809159.1|	-	6.1e-39	134.2	2.2	7.3e-39	133.9	2.2	1.1	1	0	0	1	1	1	1	Pyridoxal-phosphate	dependent	enzyme
IGPS	PF00218.21	gi|345006307|ref|YP_004809160.1|	-	2.3e-69	233.4	0.0	2.9e-69	233.1	0.0	1.0	1	0	0	1	1	1	1	Indole-3-glycerol	phosphate	synthase
NanE	PF04131.14	gi|345006307|ref|YP_004809160.1|	-	3.2e-06	26.5	0.3	7.5e-05	22.0	0.3	2.4	1	1	0	1	1	1	1	Putative	N-acetylmannosamine-6-phosphate	epimerase
FMN_dh	PF01070.18	gi|345006307|ref|YP_004809160.1|	-	7.9e-05	21.8	0.6	0.00025	20.2	0.4	1.7	2	0	0	2	2	2	1	FMN-dependent	dehydrogenase
QRPTase_C	PF01729.19	gi|345006307|ref|YP_004809160.1|	-	9.6e-05	22.2	0.2	0.00033	20.5	0.0	1.8	1	1	1	2	2	2	1	Quinolinate	phosphoribosyl	transferase,	C-terminal	domain
DUF3987	PF13148.6	gi|345006307|ref|YP_004809160.1|	-	0.006	15.6	0.1	0.75	8.7	0.0	2.0	2	0	0	2	2	2	2	Protein	of	unknown	function	(DUF3987)
His_biosynth	PF00977.21	gi|345006307|ref|YP_004809160.1|	-	0.016	14.6	0.1	0.11	11.9	0.0	2.2	2	2	0	2	2	2	0	Histidine	biosynthesis	protein
ThiG	PF05690.14	gi|345006307|ref|YP_004809160.1|	-	0.22	10.8	5.4	0.073	12.4	0.4	2.6	1	1	1	3	3	3	0	Thiazole	biosynthesis	protein	ThiG
DNA_binding_1	PF01035.20	gi|345006308|ref|YP_004809161.1|	-	1.2e-11	44.5	0.0	1.8e-11	44.0	0.0	1.3	1	0	0	1	1	1	1	6-O-methylguanine	DNA	methyltransferase,	DNA	binding	domain
Holin_SPP1	PF04688.13	gi|345006309|ref|YP_004809162.1|	-	0.03	14.5	0.5	0.062	13.5	0.5	1.5	1	0	0	1	1	1	0	SPP1	phage	holin
Asn_synthase	PF00733.21	gi|345006310|ref|YP_004809163.1|	-	4.1e-10	39.9	0.2	5.7e-10	39.4	0.2	1.4	1	0	0	1	1	1	1	Asparagine	synthase
tRNA_Me_trans	PF03054.16	gi|345006310|ref|YP_004809163.1|	-	1.2e-09	37.4	0.1	1.2e-06	27.6	0.1	2.3	2	0	0	2	2	2	2	tRNA	methyl	transferase
NAD_synthase	PF02540.17	gi|345006310|ref|YP_004809163.1|	-	6.4e-09	35.3	0.0	1e-08	34.6	0.0	1.2	1	0	0	1	1	1	1	NAD	synthase
QueC	PF06508.13	gi|345006310|ref|YP_004809163.1|	-	4e-06	26.5	0.0	0.00018	21.1	0.0	2.3	2	0	0	2	2	2	1	Queuosine	biosynthesis	protein	QueC
ATP_bind_3	PF01171.20	gi|345006310|ref|YP_004809163.1|	-	0.00051	19.8	0.0	0.0015	18.4	0.0	1.7	2	0	0	2	2	2	1	PP-loop	family
Arginosuc_synth	PF00764.19	gi|345006310|ref|YP_004809163.1|	-	0.0043	16.4	0.0	0.0064	15.8	0.0	1.2	1	0	0	1	1	1	1	Arginosuccinate	synthase
QueH	PF02677.14	gi|345006310|ref|YP_004809163.1|	-	0.033	14.3	0.0	0.058	13.5	0.0	1.4	1	0	0	1	1	1	0	Epoxyqueuosine	reductase	QueH
LPD22	PF18834.1	gi|345006310|ref|YP_004809163.1|	-	0.16	12.2	1.8	5.3	7.3	0.1	3.2	3	0	0	3	3	3	0	Large	polyvalent	protein	associated	domain	22
MutS_V	PF00488.21	gi|345006311|ref|YP_004809164.1|	-	3.7e-07	30.3	0.1	6.7e-07	29.5	0.1	1.4	1	0	0	1	1	1	1	MutS	domain	V
HHH_5	PF14520.6	gi|345006311|ref|YP_004809164.1|	-	0.00032	21.2	4.7	0.00032	21.2	0.7	2.8	3	0	0	3	3	3	1	Helix-hairpin-helix	domain
HHH	PF00633.23	gi|345006311|ref|YP_004809164.1|	-	0.04	13.8	3.1	0.25	11.3	0.0	3.4	3	0	0	3	3	3	0	Helix-hairpin-helix	motif
AAA_21	PF13304.6	gi|345006311|ref|YP_004809164.1|	-	0.16	11.8	0.4	5.2	6.8	0.0	2.3	2	0	0	2	2	2	0	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
Metallophos_2	PF12850.7	gi|345006312|ref|YP_004809165.1|	-	3e-27	95.8	0.5	3.5e-27	95.6	0.5	1.1	1	0	0	1	1	1	1	Calcineurin-like	phosphoesterase	superfamily	domain
Metallophos	PF00149.28	gi|345006312|ref|YP_004809165.1|	-	4.7e-05	24.0	0.2	0.29	11.6	0.0	2.1	1	1	1	2	2	2	2	Calcineurin-like	phosphoesterase
Cation_efflux	PF01545.21	gi|345006313|ref|YP_004809166.1|	-	3.9e-29	101.8	7.6	4.9e-29	101.5	7.6	1.1	1	0	0	1	1	1	1	Cation	efflux	family
ZT_dimer	PF16916.5	gi|345006313|ref|YP_004809166.1|	-	1e-06	28.8	0.0	1.6e-06	28.2	0.0	1.3	1	0	0	1	1	1	1	Dimerisation	domain	of	Zinc	Transporter
Zn-ribbon_8	PF09723.10	gi|345006314|ref|YP_004809167.1|	-	0.14	12.3	0.7	0.32	11.1	0.7	1.7	1	0	0	1	1	1	0	Zinc	ribbon	domain
MFS_1	PF07690.16	gi|345006315|ref|YP_004809168.1|	-	9.8e-46	156.3	67.5	1.5e-42	145.8	47.6	2.0	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
MFS_1_like	PF12832.7	gi|345006315|ref|YP_004809168.1|	-	0.0024	16.8	0.3	0.0024	16.8	0.3	3.4	2	1	1	3	3	3	3	MFS_1	like	family
TMEM126	PF07114.11	gi|345006315|ref|YP_004809168.1|	-	0.15	11.5	0.5	0.29	10.5	0.5	1.5	1	0	0	1	1	1	0	Transmembrane	protein	126
PCNA_N	PF00705.18	gi|345006316|ref|YP_004809169.1|	-	3e-11	43.1	0.9	7.1e-11	41.9	0.4	1.8	2	0	0	2	2	2	1	Proliferating	cell	nuclear	antigen,	N-terminal	domain
PCNA_C	PF02747.15	gi|345006316|ref|YP_004809169.1|	-	1.8e-06	28.1	0.0	1.3e-05	25.4	0.0	2.3	2	1	0	2	2	2	1	Proliferating	cell	nuclear	antigen,	C-terminal	domain
Mrr_cat	PF04471.12	gi|345006317|ref|YP_004809170.1|	-	1.5e-20	73.4	0.0	2.5e-20	72.6	0.0	1.4	1	0	0	1	1	1	1	Restriction	endonuclease
Mrr_cat_2	PF13156.6	gi|345006317|ref|YP_004809170.1|	-	0.00049	20.0	0.0	0.00082	19.3	0.0	1.3	1	0	0	1	1	1	1	Restriction	endonuclease
Peptidase_M29	PF02073.15	gi|345006318|ref|YP_004809171.1|	-	2.1e-65	221.1	0.0	2.5e-65	220.8	0.0	1.0	1	0	0	1	1	1	1	Thermophilic	metalloprotease	(M29)
DUF5595	PF18077.1	gi|345006318|ref|YP_004809171.1|	-	0.043	13.9	0.0	0.093	12.8	0.0	1.5	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF5595)
AsnC_trans_reg	PF01037.21	gi|345006319|ref|YP_004809172.1|	-	2.5e-11	43.4	0.3	4.1e-11	42.7	0.3	1.3	1	0	0	1	1	1	1	Lrp/AsnC	ligand	binding	domain
HTH_24	PF13412.6	gi|345006319|ref|YP_004809172.1|	-	6.3e-10	38.5	0.1	1.6e-09	37.2	0.1	1.7	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_AsnC-type	PF13404.6	gi|345006319|ref|YP_004809172.1|	-	1.1e-08	34.7	0.7	2.7e-08	33.5	0.7	1.7	1	0	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
HTH_5	PF01022.20	gi|345006319|ref|YP_004809172.1|	-	3.9e-06	26.6	0.0	7.3e-06	25.8	0.0	1.4	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_11	PF08279.12	gi|345006319|ref|YP_004809172.1|	-	2.9e-05	23.9	0.0	5.2e-05	23.1	0.0	1.5	1	0	0	1	1	1	1	HTH	domain
HTH_20	PF12840.7	gi|345006319|ref|YP_004809172.1|	-	7.3e-05	22.7	0.1	0.00021	21.3	0.1	1.8	1	1	0	1	1	1	1	Helix-turn-helix	domain
GntR	PF00392.21	gi|345006319|ref|YP_004809172.1|	-	0.00046	19.8	0.1	0.00096	18.8	0.1	1.5	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	gntR	family
MarR	PF01047.22	gi|345006319|ref|YP_004809172.1|	-	0.00074	19.4	0.0	0.0028	17.5	0.0	1.9	2	0	0	2	2	2	1	MarR	family
HTH_28	PF13518.6	gi|345006319|ref|YP_004809172.1|	-	0.00095	19.2	0.0	0.0016	18.5	0.0	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_DeoR	PF08220.12	gi|345006319|ref|YP_004809172.1|	-	0.0013	18.4	0.0	0.003	17.3	0.0	1.6	1	0	0	1	1	1	1	DeoR-like	helix-turn-helix	domain
TrmB	PF01978.19	gi|345006319|ref|YP_004809172.1|	-	0.0019	18.0	0.0	0.0037	17.1	0.0	1.4	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_10	PF04967.12	gi|345006319|ref|YP_004809172.1|	-	0.0027	17.5	0.0	0.0056	16.5	0.0	1.5	1	0	0	1	1	1	1	HTH	DNA	binding	domain
HTH_Crp_2	PF13545.6	gi|345006319|ref|YP_004809172.1|	-	0.0045	16.9	0.0	0.0092	15.9	0.0	1.6	1	0	0	1	1	1	1	Crp-like	helix-turn-helix	domain
MarR_2	PF12802.7	gi|345006319|ref|YP_004809172.1|	-	0.0052	16.7	0.0	0.011	15.7	0.0	1.5	1	0	0	1	1	1	1	MarR	family
HTH_38	PF13936.6	gi|345006319|ref|YP_004809172.1|	-	0.0052	16.5	0.0	0.01	15.6	0.0	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_50	PF18024.1	gi|345006319|ref|YP_004809172.1|	-	0.012	15.2	0.0	0.025	14.2	0.0	1.5	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_27	PF13463.6	gi|345006319|ref|YP_004809172.1|	-	0.012	16.0	0.2	0.066	13.7	0.0	2.2	2	1	1	3	3	3	0	Winged	helix	DNA-binding	domain
HTH_IclR	PF09339.10	gi|345006319|ref|YP_004809172.1|	-	0.027	14.2	0.1	0.057	13.2	0.1	1.5	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
HTH_23	PF13384.6	gi|345006319|ref|YP_004809172.1|	-	0.037	13.8	0.0	0.068	13.0	0.0	1.4	1	0	0	1	1	1	0	Homeodomain-like	domain
Mga	PF05043.13	gi|345006319|ref|YP_004809172.1|	-	0.13	12.9	0.0	0.36	11.5	0.0	1.7	2	0	0	2	2	2	0	Mga	helix-turn-helix	domain
Gln-synt_C	PF00120.24	gi|345006320|ref|YP_004809173.1|	-	1.1e-138	462.0	0.0	1.3e-138	461.7	0.0	1.1	1	0	0	1	1	1	1	Glutamine	synthetase,	catalytic	domain
Gln-synt_N	PF03951.19	gi|345006320|ref|YP_004809173.1|	-	3e-31	107.0	0.6	3.2e-30	103.7	0.0	2.3	2	0	0	2	2	2	1	Glutamine	synthetase,	beta-Grasp	domain
Gln-synt_N_2	PF16952.5	gi|345006320|ref|YP_004809173.1|	-	0.07	13.0	0.0	0.44	10.4	0.0	2.1	1	1	0	1	1	1	0	Glutamine	synthetase	N-terminal	domain
PAP2	PF01569.21	gi|345006321|ref|YP_004809174.1|	-	1.4e-17	63.7	2.4	1.4e-17	63.7	2.4	2.2	2	0	0	2	2	2	1	PAP2	superfamily
PAP2_3	PF14378.6	gi|345006321|ref|YP_004809174.1|	-	8.6e-07	28.8	9.0	2.4e-06	27.4	9.0	1.8	1	0	0	1	1	1	1	PAP2	superfamily
DUF373	PF04123.13	gi|345006321|ref|YP_004809174.1|	-	1.1	8.6	3.7	12	5.2	0.0	2.8	3	1	0	3	3	3	0	Domain	of	unknown	function	(DUF373)
Virul_fac_BrkB	PF03631.15	gi|345006322|ref|YP_004809175.1|	-	3.5e-41	141.5	33.0	3.5e-41	141.5	33.0	1.9	2	0	0	2	2	2	1	Virulence	factor	BrkB
ABC2_membrane_2	PF12679.7	gi|345006323|ref|YP_004809176.1|	-	7.4e-18	64.8	5.7	8.6e-18	64.6	5.7	1.0	1	0	0	1	1	1	1	ABC-2	family	transporter	protein
Ferritin_2	PF13668.6	gi|345006324|ref|YP_004809177.1|	-	3.4e-38	130.9	2.4	6.7e-38	130.0	2.4	1.5	1	0	0	1	1	1	1	Ferritin-like	domain
DREPP	PF05558.12	gi|345006324|ref|YP_004809177.1|	-	0.49	10.3	10.2	1	9.2	10.2	1.6	1	0	0	1	1	1	0	DREPP	plasma	membrane	polypeptide
NESP55	PF06390.12	gi|345006324|ref|YP_004809177.1|	-	0.66	9.5	13.0	1.1	8.8	13.0	1.4	1	0	0	1	1	1	0	Neuroendocrine-specific	golgi	protein	P55	(NESP55)
RNA_polI_A14	PF08203.11	gi|345006324|ref|YP_004809177.1|	-	2.6	8.8	6.6	9.1	7.1	6.6	2.0	1	1	0	1	1	1	0	Yeast	RNA	polymerase	I	subunit	RPA14
TRM	PF02005.16	gi|345006325|ref|YP_004809178.1|	-	1.3e-93	314.1	0.0	1.5e-93	314.0	0.0	1.0	1	0	0	1	1	1	1	N2,N2-dimethylguanosine	tRNA	methyltransferase
PrmA	PF06325.13	gi|345006325|ref|YP_004809178.1|	-	2.6e-05	23.7	0.3	3.8e-05	23.2	0.3	1.2	1	0	0	1	1	1	1	Ribosomal	protein	L11	methyltransferase	(PrmA)
Methyltransf_25	PF13649.6	gi|345006325|ref|YP_004809178.1|	-	0.0011	19.6	0.1	0.0032	18.1	0.1	1.8	1	0	0	1	1	1	1	Methyltransferase	domain
MTS	PF05175.14	gi|345006325|ref|YP_004809178.1|	-	0.0023	17.5	0.3	0.0065	16.0	0.2	1.7	1	1	0	1	1	1	1	Methyltransferase	small	domain
Met_10	PF02475.16	gi|345006325|ref|YP_004809178.1|	-	0.0043	16.8	0.0	0.0056	16.4	0.0	1.2	1	0	0	1	1	1	1	Met-10+	like-protein
HypA	PF01155.19	gi|345006325|ref|YP_004809178.1|	-	0.015	15.3	0.0	0.03	14.3	0.0	1.4	1	0	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
Zn-ribbon_8	PF09723.10	gi|345006325|ref|YP_004809178.1|	-	0.024	14.7	1.8	0.024	14.7	1.8	1.8	2	0	0	2	2	1	0	Zinc	ribbon	domain
Methyltransf_11	PF08241.12	gi|345006325|ref|YP_004809178.1|	-	0.027	15.1	0.1	0.084	13.5	0.1	1.9	1	0	0	1	1	1	0	Methyltransferase	domain
Methyltransf_23	PF13489.6	gi|345006325|ref|YP_004809178.1|	-	0.14	12.0	0.0	0.32	10.8	0.0	1.5	1	0	0	1	1	1	0	Methyltransferase	domain
zf-IS66	PF13005.7	gi|345006325|ref|YP_004809178.1|	-	1.3	9.5	4.1	2	8.9	0.0	3.0	3	0	0	3	3	3	0	zinc-finger	binding	domain	of	transposase	IS66
zf-HYPF	PF07503.12	gi|345006325|ref|YP_004809178.1|	-	3.1	7.7	5.7	7.7	6.4	5.7	1.7	1	0	0	1	1	1	0	HypF	finger
GGACT	PF06094.12	gi|345006326|ref|YP_004809179.1|	-	2.8e-11	44.1	0.2	3.8e-11	43.6	0.2	1.2	1	0	0	1	1	1	1	Gamma-glutamyl	cyclotransferase,	AIG2-like
AIG2_2	PF13772.6	gi|345006326|ref|YP_004809179.1|	-	9.1e-05	22.8	0.0	0.00013	22.3	0.0	1.3	1	0	0	1	1	1	1	AIG2-like	family
PALP	PF00291.25	gi|345006327|ref|YP_004809180.1|	-	1.4e-85	287.3	7.0	1.7e-85	287.0	7.0	1.1	1	0	0	1	1	1	1	Pyridoxal-phosphate	dependent	enzyme
ACT_4	PF13291.6	gi|345006327|ref|YP_004809180.1|	-	2.1e-05	25.0	0.4	7e-05	23.3	0.1	2.0	2	0	0	2	2	2	1	ACT	domain
ACT	PF01842.25	gi|345006327|ref|YP_004809180.1|	-	0.00051	19.8	0.1	0.0018	18.0	0.1	2.0	1	0	0	1	1	1	1	ACT	domain
FtsA	PF14450.6	gi|345006327|ref|YP_004809180.1|	-	0.086	13.3	0.2	1	9.8	0.2	2.3	1	1	0	1	1	1	0	Cell	division	protein	FtsA
CagE_TrbE_VirB	PF03135.14	gi|345006327|ref|YP_004809180.1|	-	0.14	12.2	0.0	0.26	11.4	0.0	1.3	1	0	0	1	1	1	0	CagE,	TrbE,	VirB	family,	component	of	type	IV	transporter	system
Phage_holin_3_6	PF07332.11	gi|345006327|ref|YP_004809180.1|	-	0.15	12.1	1.4	0.35	10.9	1.4	1.6	1	0	0	1	1	1	0	Putative	Actinobacterial	Holin-X,	holin	superfamily	III
Ribonuc_L-PSP	PF01042.21	gi|345006328|ref|YP_004809181.1|	-	7.4e-38	129.3	0.0	8.2e-38	129.1	0.0	1.0	1	0	0	1	1	1	1	Endoribonuclease	L-PSP
DUF5493	PF17597.2	gi|345006329|ref|YP_004809182.1|	-	0.1	12.8	2.4	0.22	11.8	2.4	1.6	1	1	0	1	1	1	0	Family	of	unknown	function	(DUF5493)
Phage_holin_3_6	PF07332.11	gi|345006329|ref|YP_004809182.1|	-	1.1	9.4	12.8	1.2	9.2	12.8	1.1	1	0	0	1	1	1	0	Putative	Actinobacterial	Holin-X,	holin	superfamily	III
DUF3040	PF11239.8	gi|345006329|ref|YP_004809182.1|	-	4.2	7.7	10.9	5.6	7.3	10.9	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3040)
HTH_10	PF04967.12	gi|345006331|ref|YP_004809184.1|	-	6.3e-17	61.1	0.1	1.1e-16	60.3	0.1	1.4	1	0	0	1	1	1	1	HTH	DNA	binding	domain
BAT	PF15915.5	gi|345006331|ref|YP_004809184.1|	-	3.3e-15	56.3	0.9	4.7e-15	55.8	0.8	1.3	1	1	0	1	1	1	1	GAF	and	HTH_10	associated	domain
Sigma70_r4	PF04545.16	gi|345006331|ref|YP_004809184.1|	-	5.2e-06	25.9	0.2	1.1e-05	24.8	0.2	1.5	1	0	0	1	1	1	1	Sigma-70,	region	4
HTH_AsnC-type	PF13404.6	gi|345006331|ref|YP_004809184.1|	-	0.012	15.5	0.1	0.02	14.7	0.1	1.3	1	0	0	1	1	1	0	AsnC-type	helix-turn-helix	domain
MarR_2	PF12802.7	gi|345006331|ref|YP_004809184.1|	-	0.021	14.7	0.0	0.038	13.9	0.0	1.5	1	0	0	1	1	1	0	MarR	family
HTH_24	PF13412.6	gi|345006331|ref|YP_004809184.1|	-	0.082	12.5	0.0	0.15	11.6	0.0	1.4	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
Sigma70_r4_2	PF08281.12	gi|345006331|ref|YP_004809184.1|	-	0.13	12.0	0.0	0.58	9.9	0.0	2.0	2	0	0	2	2	2	0	Sigma-70,	region	4
Mem_trans	PF03547.18	gi|345006333|ref|YP_004809186.1|	-	3.7e-21	75.0	25.4	9.1e-11	40.8	14.1	2.0	1	1	1	2	2	2	2	Membrane	transport	protein
MatE	PF01554.18	gi|345006334|ref|YP_004809187.1|	-	4.7e-58	195.4	36.1	5.5e-30	104.2	11.0	2.4	3	0	0	3	3	3	2	MatE
Polysacc_synt_C	PF14667.6	gi|345006334|ref|YP_004809187.1|	-	1.9e-11	44.2	15.6	4.4e-09	36.5	3.5	4.5	4	2	1	5	5	5	2	Polysaccharide	biosynthesis	C-terminal	domain
PNP_UDP_1	PF01048.20	gi|345006335|ref|YP_004809188.1|	-	1.9e-42	145.1	0.1	2.2e-42	144.9	0.1	1.0	1	0	0	1	1	1	1	Phosphorylase	superfamily
SMC_ScpA	PF02616.14	gi|345006336|ref|YP_004809189.1|	-	8.8e-11	42.2	0.0	2e-09	37.7	0.0	2.2	2	0	0	2	2	2	2	Segregation	and	condensation	protein	ScpA
SMC_N	PF02463.19	gi|345006337|ref|YP_004809190.1|	-	2.4e-57	193.9	20.6	4.1e-57	193.1	20.6	1.5	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
SMC_hinge	PF06470.13	gi|345006337|ref|YP_004809190.1|	-	5.5e-28	97.6	0.0	1.6e-27	96.1	0.0	1.9	1	0	0	1	1	1	1	SMC	proteins	Flexible	Hinge	Domain
AAA_21	PF13304.6	gi|345006337|ref|YP_004809190.1|	-	3.7e-13	50.0	0.9	5e-08	33.1	0.1	4.6	4	1	1	5	5	4	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_23	PF13476.6	gi|345006337|ref|YP_004809190.1|	-	2.4e-09	38.0	20.9	2.4e-09	38.0	20.9	7.8	2	2	2	4	4	1	1	AAA	domain
AAA_13	PF13166.6	gi|345006337|ref|YP_004809190.1|	-	6.6e-09	35.0	91.2	1.2e-05	24.2	8.9	5.9	3	2	3	6	6	6	5	AAA	domain
Spc7	PF08317.11	gi|345006337|ref|YP_004809190.1|	-	7.5e-09	34.9	128.5	0.0018	17.2	17.6	7.7	2	2	4	7	7	7	4	Spc7	kinetochore	protein
MscS_porin	PF12795.7	gi|345006337|ref|YP_004809190.1|	-	9.5e-08	31.9	11.0	9.5e-08	31.9	11.0	6.5	2	2	4	6	6	6	2	Mechanosensitive	ion	channel	porin	domain
DUF1664	PF07889.12	gi|345006337|ref|YP_004809190.1|	-	1.2e-07	31.8	66.8	0.00086	19.3	4.8	8.7	4	2	4	10	10	9	5	Protein	of	unknown	function	(DUF1664)
ATG16	PF08614.11	gi|345006337|ref|YP_004809190.1|	-	2.4e-07	31.2	139.9	0.0019	18.4	6.9	7.8	3	2	3	7	7	7	4	Autophagy	protein	16	(ATG16)
DUF724	PF05266.14	gi|345006337|ref|YP_004809190.1|	-	3e-07	30.5	96.3	0.00023	21.0	9.4	8.6	2	2	6	8	8	8	4	Protein	of	unknown	function	(DUF724)
Fib_alpha	PF08702.10	gi|345006337|ref|YP_004809190.1|	-	1.6e-06	28.3	52.8	0.00011	22.4	3.2	6.9	3	2	3	6	6	6	2	Fibrinogen	alpha/beta	chain	family
AAA_29	PF13555.6	gi|345006337|ref|YP_004809190.1|	-	2.8e-05	23.8	0.0	6.1e-05	22.7	0.0	1.6	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
NPV_P10	PF05531.12	gi|345006337|ref|YP_004809190.1|	-	6.8e-05	23.2	49.4	0.0038	17.6	0.2	10.9	5	3	3	9	9	8	1	Nucleopolyhedrovirus	P10	protein
EzrA	PF06160.12	gi|345006337|ref|YP_004809190.1|	-	8.9e-05	20.8	97.7	0.00043	18.6	19.9	5.1	2	2	1	3	3	3	2	Septation	ring	formation	regulator,	EzrA
Tropomyosin	PF00261.20	gi|345006337|ref|YP_004809190.1|	-	0.00092	18.7	30.9	0.00092	18.7	30.9	6.0	2	2	3	5	5	3	1	Tropomyosin
Filament	PF00038.21	gi|345006337|ref|YP_004809190.1|	-	0.0011	18.6	117.7	0.044	13.4	19.3	5.5	2	2	3	5	5	4	4	Intermediate	filament	protein
APG17	PF04108.12	gi|345006337|ref|YP_004809190.1|	-	0.0025	17.0	29.1	0.0025	17.0	29.1	4.0	2	1	0	2	2	1	1	Autophagy	protein	Apg17
Bap31_Bap29_C	PF18035.1	gi|345006337|ref|YP_004809190.1|	-	0.0027	17.7	6.9	0.0027	17.7	6.9	7.7	7	1	0	7	7	5	1	Bap31/Bap29	cytoplasmic	coiled-coil	domain
CENP-F_leu_zip	PF10473.9	gi|345006337|ref|YP_004809190.1|	-	0.0038	17.3	23.4	0.0038	17.3	23.4	7.7	2	2	7	9	9	7	3	Leucine-rich	repeats	of	kinetochore	protein	Cenp-F/LEK1
AAA_15	PF13175.6	gi|345006337|ref|YP_004809190.1|	-	0.0046	16.7	41.1	0.011	15.5	19.8	5.2	2	2	1	3	3	3	2	AAA	ATPase	domain
FAM184	PF15665.5	gi|345006337|ref|YP_004809190.1|	-	0.0062	16.3	26.9	0.0062	16.3	26.9	5.0	2	2	2	4	4	3	1	Family	with	sequence	similarity	184,	A	and	B
DUF3584	PF12128.8	gi|345006337|ref|YP_004809190.1|	-	0.0077	13.8	118.4	0.026	12.1	35.1	4.3	2	2	2	4	4	4	3	Protein	of	unknown	function	(DUF3584)
UPF0242	PF06785.11	gi|345006337|ref|YP_004809190.1|	-	0.01	16.0	10.9	0.01	16.0	10.9	7.9	3	2	4	7	7	6	0	Uncharacterised	protein	family	(UPF0242)	N-terminus
GAS	PF13851.6	gi|345006337|ref|YP_004809190.1|	-	0.01	15.2	108.2	0.02	14.3	12.7	7.4	2	2	4	7	7	7	0	Growth-arrest	specific	micro-tubule	binding
Laminin_II	PF06009.12	gi|345006337|ref|YP_004809190.1|	-	0.015	15.4	70.6	0.025	14.6	8.2	8.2	4	2	3	9	9	9	0	Laminin	Domain	II
Baculo_PEP_C	PF04513.12	gi|345006337|ref|YP_004809190.1|	-	0.015	15.3	29.5	0.72	9.9	1.6	7.4	2	2	4	6	6	6	0	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
DUF4407	PF14362.6	gi|345006337|ref|YP_004809190.1|	-	0.017	14.5	98.6	0.095	12.0	11.9	6.3	2	2	3	5	5	5	0	Domain	of	unknown	function	(DUF4407)
Atg14	PF10186.9	gi|345006337|ref|YP_004809190.1|	-	0.029	13.4	88.3	0.048	12.7	11.3	5.9	2	2	4	6	6	6	0	Vacuolar	sorting	38	and	autophagy-related	subunit	14
Fez1	PF06818.15	gi|345006337|ref|YP_004809190.1|	-	0.05	14.1	114.6	0.016	15.7	23.5	6.8	2	2	5	7	7	7	0	Fez1
TPR_MLP1_2	PF07926.12	gi|345006337|ref|YP_004809190.1|	-	0.053	13.6	132.0	0.033	14.3	23.5	8.5	3	3	2	6	6	6	0	TPR/MLP1/MLP2-like	protein
Exonuc_VII_L	PF02601.15	gi|345006337|ref|YP_004809190.1|	-	0.054	13.1	66.1	0.093	12.3	5.9	5.8	2	2	2	4	4	3	0	Exonuclease	VII,	large	subunit
FliJ	PF02050.16	gi|345006337|ref|YP_004809190.1|	-	0.094	12.9	92.2	0.017	15.3	5.2	9.9	4	2	8	12	12	11	0	Flagellar	FliJ	protein
PI_PP_I	PF18363.1	gi|345006337|ref|YP_004809190.1|	-	0.42	10.8	1.3	3.9	7.7	0.1	3.1	3	0	0	3	3	2	0	Phosphoinositide	phosphatase	insertion	domain
TMPIT	PF07851.13	gi|345006337|ref|YP_004809190.1|	-	1.3	8.2	66.5	0.24	10.6	5.2	6.8	2	2	5	7	7	7	0	TMPIT-like	protein
APG6_N	PF17675.1	gi|345006337|ref|YP_004809190.1|	-	1.5	9.3	171.5	0.89	10.1	28.7	10.2	2	2	7	9	9	7	0	Apg6	coiled-coil	region
Mating_N	PF12731.7	gi|345006337|ref|YP_004809190.1|	-	7.9	6.6	8.6	11	6.2	0.0	4.6	5	1	0	5	5	3	0	Mating-type	protein	beta	1
CENP-F_leu_zip	PF10473.9	gi|345006338|ref|YP_004809191.1|	-	0.00064	19.8	4.6	0.0011	19.0	4.6	1.4	1	0	0	1	1	1	1	Leucine-rich	repeats	of	kinetochore	protein	Cenp-F/LEK1
GAS	PF13851.6	gi|345006338|ref|YP_004809191.1|	-	0.002	17.5	4.9	0.0025	17.2	4.9	1.2	1	0	0	1	1	1	1	Growth-arrest	specific	micro-tubule	binding
TolA_bind_tri	PF16331.5	gi|345006338|ref|YP_004809191.1|	-	0.0031	17.5	1.5	0.0031	17.5	1.5	2.1	1	1	0	2	2	2	1	TolA	binding	protein	trimerisation
DUF4407	PF14362.6	gi|345006338|ref|YP_004809191.1|	-	0.0038	16.6	15.9	0.0044	16.4	15.9	1.0	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4407)
Tropomyosin	PF00261.20	gi|345006338|ref|YP_004809191.1|	-	0.0053	16.2	3.5	0.0053	16.2	3.5	2.1	2	0	0	2	2	2	1	Tropomyosin
YabA	PF06156.13	gi|345006338|ref|YP_004809191.1|	-	0.0079	16.8	1.9	0.0094	16.6	1.6	1.3	1	1	0	1	1	1	1	Initiation	control	protein	YabA
FlaC_arch	PF05377.11	gi|345006338|ref|YP_004809191.1|	-	0.0084	16.5	1.5	0.015	15.7	1.5	1.4	1	0	0	1	1	1	1	Flagella	accessory	protein	C	(FlaC)
MobL	PF18555.1	gi|345006338|ref|YP_004809191.1|	-	0.017	14.4	3.3	0.018	14.3	3.3	1.0	1	0	0	1	1	1	0	MobL	relaxases
SlyX	PF04102.12	gi|345006338|ref|YP_004809191.1|	-	0.017	15.7	14.1	0.11	13.1	14.1	2.3	1	1	0	1	1	1	0	SlyX
DivIC	PF04977.15	gi|345006338|ref|YP_004809191.1|	-	0.02	14.7	2.8	0.02	14.7	2.8	2.4	2	1	1	3	3	2	0	Septum	formation	initiator
COG5	PF10392.9	gi|345006338|ref|YP_004809191.1|	-	0.074	13.2	0.2	0.11	12.6	0.2	1.3	1	0	0	1	1	1	0	Golgi	transport	complex	subunit	5
TACC_C	PF05010.14	gi|345006338|ref|YP_004809191.1|	-	0.1	12.4	7.0	0.083	12.7	6.4	1.2	1	1	0	1	1	1	0	Transforming	acidic	coiled-coil-containing	protein	(TACC),	C-terminal
Cwf_Cwc_15	PF04889.12	gi|345006338|ref|YP_004809191.1|	-	0.11	12.2	14.8	0.13	11.9	14.8	1.2	1	0	0	1	1	1	0	Cwf15/Cwc15	cell	cycle	control	protein
LPP	PF04728.13	gi|345006338|ref|YP_004809191.1|	-	0.15	12.4	0.4	0.15	12.4	0.4	2.6	3	0	0	3	3	2	0	Lipoprotein	leucine-zipper
SKA1	PF07160.12	gi|345006338|ref|YP_004809191.1|	-	0.16	11.8	7.9	0.18	11.6	7.9	1.1	1	0	0	1	1	1	0	Spindle	and	kinetochore-associated	protein	1
CNDH2_M	PF16869.5	gi|345006338|ref|YP_004809191.1|	-	0.23	12.2	7.8	0.29	11.8	7.8	1.2	1	0	0	1	1	1	0	PF16858
DUF16	PF01519.16	gi|345006338|ref|YP_004809191.1|	-	0.4	11.2	6.3	0.72	10.4	6.3	1.6	1	1	0	1	1	1	0	Protein	of	unknown	function	DUF16
Fmp27_WPPW	PF10359.9	gi|345006338|ref|YP_004809191.1|	-	0.67	8.7	5.6	0.74	8.6	5.6	1.1	1	0	0	1	1	1	0	RNA	pol	II	promoter	Fmp27	protein	domain
V_ATPase_I	PF01496.19	gi|345006338|ref|YP_004809191.1|	-	0.73	7.7	7.2	0.76	7.6	7.2	1.1	1	0	0	1	1	1	0	V-type	ATPase	116kDa	subunit	family
ALMT	PF11744.8	gi|345006338|ref|YP_004809191.1|	-	0.84	8.4	6.1	0.92	8.3	6.1	1.0	1	0	0	1	1	1	0	Aluminium	activated	malate	transporter
Pox_A_type_inc	PF04508.12	gi|345006338|ref|YP_004809191.1|	-	1	9.3	3.4	14	5.8	1.2	2.3	2	0	0	2	2	2	0	Viral	A-type	inclusion	protein	repeat
RP-C_C	PF11800.8	gi|345006338|ref|YP_004809191.1|	-	2.5	8.2	10.4	3.6	7.6	10.4	1.2	1	0	0	1	1	1	0	Replication	protein	C	C-terminal	region
cwf18	PF08315.12	gi|345006338|ref|YP_004809191.1|	-	3.5	8.3	13.0	0.93	10.2	10.2	1.4	2	0	0	2	2	1	0	cwf18	pre-mRNA	splicing	factor
DASH_Spc19	PF08287.11	gi|345006338|ref|YP_004809191.1|	-	3.8	7.4	11.2	6.7	6.6	11.2	1.6	1	1	0	1	1	1	0	Spc19
HAUS6_N	PF14661.6	gi|345006338|ref|YP_004809191.1|	-	4.2	6.9	6.4	4.6	6.8	6.4	1.3	1	1	0	1	1	1	0	HAUS	augmin-like	complex	subunit	6	N-terminus
ADIP	PF11559.8	gi|345006338|ref|YP_004809191.1|	-	4.5	7.4	11.7	0.089	12.9	2.1	2.0	1	1	1	2	2	2	0	Afadin-	and	alpha	-actinin-Binding
ZapB	PF06005.12	gi|345006338|ref|YP_004809191.1|	-	4.6	7.8	17.3	17	5.9	17.3	2.1	1	1	0	1	1	1	0	Cell	division	protein	ZapB
UPF0560	PF10577.9	gi|345006338|ref|YP_004809191.1|	-	6.9	5.0	10.2	7.8	4.9	10.2	1.1	1	0	0	1	1	1	0	Uncharacterised	protein	family	UPF0560
DUF913	PF06025.12	gi|345006338|ref|YP_004809191.1|	-	8.8	5.2	6.8	9.9	5.0	6.8	1.1	1	0	0	1	1	1	0	Domain	of	Unknown	Function	(DUF913)
Plasmodium_Vir	PF05795.11	gi|345006338|ref|YP_004809191.1|	-	9.9	5.5	6.7	11	5.3	6.7	1.0	1	0	0	1	1	1	0	Plasmodium	vivax	Vir	protein
DDE_Tnp_1	PF01609.21	gi|345006339|ref|YP_004809192.1|	-	2.5e-09	37.1	0.0	4e-09	36.4	0.0	1.3	1	0	0	1	1	1	1	Transposase	DDE	domain
DDE_Tnp_1_7	PF13843.6	gi|345006339|ref|YP_004809192.1|	-	0.0042	16.4	0.0	0.016	14.5	0.0	1.7	2	0	0	2	2	2	1	Transposase	IS4
PNTB_4TM	PF12769.7	gi|345006340|ref|YP_004809193.1|	-	0.21	12.1	10.9	0.11	12.9	1.8	2.5	2	1	0	2	2	2	0	4TM	region	of	pyridine	nucleotide	transhydrogenase,	mitoch
TssN	PF17555.2	gi|345006340|ref|YP_004809193.1|	-	0.27	10.6	6.9	0.36	10.2	6.9	1.2	1	0	0	1	1	1	0	Type	VI	secretion	system,	TssN
Tmemb_170	PF10190.9	gi|345006340|ref|YP_004809193.1|	-	0.84	10.0	12.3	0.25	11.7	3.3	2.4	1	1	1	2	2	2	0	Putative	transmembrane	protein	170
DUF2070	PF09843.9	gi|345006340|ref|YP_004809193.1|	-	1	7.6	8.0	1.3	7.2	8.0	1.0	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2070)
S_4TM	PF18159.1	gi|345006340|ref|YP_004809193.1|	-	3.3	6.9	7.8	0.4	9.9	0.6	2.1	2	0	0	2	2	2	0	SMODS-associating	4TM	effector	domain
MerC	PF03203.14	gi|345006340|ref|YP_004809193.1|	-	3.8	8.0	12.9	7.4	7.1	6.8	2.2	1	1	1	2	2	2	0	MerC	mercury	resistance	protein
TAT_signal	PF10518.9	gi|345006341|ref|YP_004809194.1|	-	0.0085	15.9	0.6	0.014	15.2	0.6	1.3	1	0	0	1	1	1	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
Reprolysin_5	PF13688.6	gi|345006342|ref|YP_004809195.1|	-	0.0025	18.0	0.2	0.0034	17.6	0.2	1.3	1	0	0	1	1	1	1	Metallo-peptidase	family	M12
Reprolysin_3	PF13582.6	gi|345006342|ref|YP_004809195.1|	-	0.021	15.3	0.0	0.033	14.7	0.0	1.4	1	0	0	1	1	1	0	Metallo-peptidase	family	M12B	Reprolysin-like
Metallopep	PF12044.8	gi|345006342|ref|YP_004809195.1|	-	0.027	13.1	0.1	0.037	12.6	0.1	1.2	1	0	0	1	1	1	0	Putative	peptidase	family
ABC_tran	PF00005.27	gi|345006343|ref|YP_004809196.1|	-	2.5e-29	102.5	0.0	5.2e-29	101.5	0.0	1.5	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|345006343|ref|YP_004809196.1|	-	1.8e-05	24.7	3.1	0.059	13.2	0.1	2.3	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_16	PF13191.6	gi|345006343|ref|YP_004809196.1|	-	0.00011	22.6	0.1	0.00026	21.4	0.1	1.6	1	1	0	1	1	1	1	AAA	ATPase	domain
TOBE_2	PF08402.10	gi|345006343|ref|YP_004809196.1|	-	0.0003	20.9	2.8	0.0011	19.1	0.1	3.2	3	1	2	5	5	4	1	TOBE	domain
TOBE	PF03459.17	gi|345006343|ref|YP_004809196.1|	-	0.0037	17.5	0.0	0.0037	17.5	0.0	2.9	4	0	0	4	4	4	1	TOBE	domain
AAA_30	PF13604.6	gi|345006343|ref|YP_004809196.1|	-	0.0069	16.1	0.1	0.022	14.5	0.1	1.8	2	0	0	2	2	2	1	AAA	domain
SMC_N	PF02463.19	gi|345006343|ref|YP_004809196.1|	-	0.0072	15.8	0.0	2	7.8	0.0	2.2	2	0	0	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
AAA_29	PF13555.6	gi|345006343|ref|YP_004809196.1|	-	0.019	14.7	0.1	0.043	13.6	0.1	1.5	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
AAA_33	PF13671.6	gi|345006343|ref|YP_004809196.1|	-	0.034	14.3	0.2	0.19	11.9	0.2	2.1	1	1	0	1	1	1	0	AAA	domain
SbcCD_C	PF13558.6	gi|345006343|ref|YP_004809196.1|	-	0.065	13.5	0.2	1.6	9.1	0.2	2.5	1	1	0	1	1	1	0	Putative	exonuclease	SbcCD,	C	subunit
AAA_23	PF13476.6	gi|345006343|ref|YP_004809196.1|	-	0.12	12.9	0.0	0.18	12.3	0.0	1.2	1	0	0	1	1	1	0	AAA	domain
RsgA_GTPase	PF03193.16	gi|345006343|ref|YP_004809196.1|	-	0.12	12.2	0.1	0.23	11.3	0.1	1.4	1	0	0	1	1	1	0	RsgA	GTPase
NACHT	PF05729.12	gi|345006343|ref|YP_004809196.1|	-	0.13	12.2	0.1	0.3	11.0	0.0	1.6	2	0	0	2	2	2	0	NACHT	domain
AAA_22	PF13401.6	gi|345006343|ref|YP_004809196.1|	-	0.2	11.9	0.7	0.55	10.5	0.2	1.8	2	0	0	2	2	2	0	AAA	domain
Cuticle_1	PF08140.11	gi|345006343|ref|YP_004809196.1|	-	0.94	9.6	3.2	2.8	8.0	0.3	3.3	3	1	1	4	4	4	0	Crustacean	cuticle	protein	repeat
BPD_transp_1	PF00528.22	gi|345006344|ref|YP_004809197.1|	-	7.7e-20	71.4	15.6	7.7e-20	71.4	15.6	1.6	2	0	0	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
SBP_bac_11	PF13531.6	gi|345006345|ref|YP_004809198.1|	-	8.5e-18	64.9	0.2	1.1e-17	64.6	0.2	1.2	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_1	PF01547.25	gi|345006345|ref|YP_004809198.1|	-	0.0053	16.7	0.1	0.0077	16.2	0.1	1.3	1	1	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
LOR	PF04525.12	gi|345006346|ref|YP_004809199.1|	-	5.7e-07	29.3	0.2	0.0052	16.4	0.1	2.9	1	1	1	2	2	2	2	LURP-one-related
Fil_haemagg	PF05594.14	gi|345006346|ref|YP_004809199.1|	-	0.31	11.6	2.1	8.3	7.0	0.4	2.4	2	1	0	2	2	2	0	Haemagluttinin	repeat
GatB_N	PF02934.15	gi|345006347|ref|YP_004809200.1|	-	4.3e-99	331.3	0.0	5.9e-99	330.9	0.0	1.1	1	0	0	1	1	1	1	GatB/GatE	catalytic	domain
GatB_Yqey	PF02637.18	gi|345006347|ref|YP_004809200.1|	-	2.3e-41	141.1	0.0	4.2e-41	140.3	0.0	1.4	1	0	0	1	1	1	1	GatB	domain
Cys_Met_Meta_PP	PF01053.20	gi|345006349|ref|YP_004809202.1|	-	1.6e-138	461.4	0.0	1.9e-138	461.2	0.0	1.0	1	0	0	1	1	1	1	Cys/Met	metabolism	PLP-dependent	enzyme
Aminotran_1_2	PF00155.21	gi|345006349|ref|YP_004809202.1|	-	2.3e-05	23.7	0.0	2.8e-05	23.4	0.0	1.2	1	0	0	1	1	1	1	Aminotransferase	class	I	and	II
DegT_DnrJ_EryC1	PF01041.17	gi|345006349|ref|YP_004809202.1|	-	8e-05	22.1	0.7	0.0023	17.3	0.5	2.7	1	1	1	2	2	2	1	DegT/DnrJ/EryC1/StrS	aminotransferase	family
Met_gamma_lyase	PF06838.11	gi|345006349|ref|YP_004809202.1|	-	0.00081	18.0	0.0	0.0041	15.7	0.0	1.8	1	1	0	1	1	1	1	Methionine	gamma-lyase
Aminotran_5	PF00266.19	gi|345006349|ref|YP_004809202.1|	-	0.0024	16.9	0.0	0.0031	16.5	0.0	1.2	1	0	0	1	1	1	1	Aminotransferase	class-V
Beta_elim_lyase	PF01212.21	gi|345006349|ref|YP_004809202.1|	-	0.043	13.1	0.1	0.24	10.6	0.1	2.1	1	1	0	1	1	1	0	Beta-eliminating	lyase
MatE	PF01554.18	gi|345006350|ref|YP_004809203.1|	-	3e-61	205.8	22.3	7.5e-37	126.5	8.7	2.4	2	0	0	2	2	2	2	MatE
Polysacc_synt_C	PF14667.6	gi|345006350|ref|YP_004809203.1|	-	2.9e-11	43.6	1.3	2.9e-11	43.6	1.3	4.0	4	0	0	4	4	4	2	Polysaccharide	biosynthesis	C-terminal	domain
MurJ	PF03023.14	gi|345006350|ref|YP_004809203.1|	-	5.4e-07	28.6	8.5	5.4e-07	28.6	8.5	2.4	2	2	1	3	3	3	1	Lipid	II	flippase	MurJ
Peptidase_S9	PF00326.21	gi|345006351|ref|YP_004809204.1|	-	3.7e-43	147.5	0.0	5.7e-43	146.9	0.0	1.3	1	0	0	1	1	1	1	Prolyl	oligopeptidase	family
Peptidase_S15	PF02129.18	gi|345006351|ref|YP_004809204.1|	-	2.3e-11	43.8	0.0	4.4e-09	36.3	0.1	2.2	1	1	1	2	2	2	2	X-Pro	dipeptidyl-peptidase	(S15	family)
DLH	PF01738.18	gi|345006351|ref|YP_004809204.1|	-	7.3e-11	42.0	0.0	1.4e-10	41.1	0.0	1.4	1	0	0	1	1	1	1	Dienelactone	hydrolase	family
Hydrolase_4	PF12146.8	gi|345006351|ref|YP_004809204.1|	-	8.3e-09	35.1	0.0	1.4e-05	24.5	0.0	2.2	2	0	0	2	2	2	2	Serine	aminopeptidase,	S33
Abhydrolase_1	PF00561.20	gi|345006351|ref|YP_004809204.1|	-	3.1e-07	30.3	0.0	0.011	15.4	0.0	2.3	1	1	1	2	2	2	2	alpha/beta	hydrolase	fold
DPPIV_N	PF00930.21	gi|345006351|ref|YP_004809204.1|	-	0.00074	18.4	0.0	0.64	8.7	0.0	3.4	2	1	2	4	4	4	2	Dipeptidyl	peptidase	IV	(DPP	IV)	N-terminal	region
Esterase	PF00756.20	gi|345006351|ref|YP_004809204.1|	-	0.00084	19.1	0.0	0.037	13.7	0.0	2.6	2	0	0	2	2	2	1	Putative	esterase
PD40	PF07676.12	gi|345006351|ref|YP_004809204.1|	-	0.00084	19.2	8.3	0.56	10.2	0.4	4.5	4	0	0	4	4	4	2	WD40-like	Beta	Propeller	Repeat
Abhydrolase_2	PF02230.16	gi|345006351|ref|YP_004809204.1|	-	0.013	15.3	0.0	0.27	11.0	0.0	2.1	2	0	0	2	2	2	0	Phospholipase/Carboxylesterase
Peptidase_S9_N	PF02897.15	gi|345006351|ref|YP_004809204.1|	-	0.034	12.9	0.0	0.11	11.3	0.0	1.7	2	0	0	2	2	2	0	Prolyl	oligopeptidase,	N-terminal	beta-propeller	domain
AXE1	PF05448.12	gi|345006351|ref|YP_004809204.1|	-	0.038	12.7	0.2	1.7	7.3	0.2	2.1	1	1	0	1	1	1	0	Acetyl	xylan	esterase	(AXE1)
BAAT_C	PF08840.11	gi|345006351|ref|YP_004809204.1|	-	0.064	13.2	0.0	3.2	7.6	0.0	2.2	1	1	0	1	1	1	0	BAAT	/	Acyl-CoA	thioester	hydrolase	C	terminal
Peptidase_S28	PF05577.12	gi|345006351|ref|YP_004809204.1|	-	0.13	11.1	0.0	0.19	10.5	0.0	1.1	1	0	0	1	1	1	0	Serine	carboxypeptidase	S28
MlaD	PF02470.20	gi|345006351|ref|YP_004809204.1|	-	0.14	12.5	0.0	9	6.7	0.0	2.4	2	0	0	2	2	2	0	MlaD	protein
LIP	PF03583.14	gi|345006351|ref|YP_004809204.1|	-	0.14	11.5	0.2	10	5.4	0.1	2.2	2	0	0	2	2	2	0	Secretory	lipase
Creatininase	PF02633.14	gi|345006353|ref|YP_004809206.1|	-	2.9e-58	197.2	2.1	3.5e-58	196.9	2.1	1.0	1	0	0	1	1	1	1	Creatinine	amidohydrolase
Copper-bind	PF00127.20	gi|345006354|ref|YP_004809207.1|	-	5.9e-10	39.5	0.0	1.4e-09	38.3	0.0	1.5	1	1	0	1	1	1	1	Copper	binding	proteins,	plastocyanin/azurin	family
Cpn10	PF00166.21	gi|345006354|ref|YP_004809207.1|	-	0.01	15.9	0.0	0.014	15.4	0.0	1.2	1	0	0	1	1	1	0	Chaperonin	10	Kd	subunit
Topoisom_bac	PF01131.20	gi|345006355|ref|YP_004809208.1|	-	1.5e-115	386.5	0.0	1.9e-115	386.2	0.0	1.1	1	0	0	1	1	1	1	DNA	topoisomerase
zf-C4_Topoisom	PF01396.19	gi|345006355|ref|YP_004809208.1|	-	4.1e-20	71.3	3.1	7.2e-15	54.5	1.3	4.0	5	0	0	5	5	5	2	Topoisomerase	DNA	binding	C4	zinc	finger
Toprim	PF01751.22	gi|345006355|ref|YP_004809208.1|	-	5.1e-17	62.0	0.0	1e-16	61.0	0.0	1.5	1	0	0	1	1	1	1	Toprim	domain
HHH_5	PF14520.6	gi|345006355|ref|YP_004809208.1|	-	8.6e-10	39.1	0.3	4e-09	36.9	0.3	2.2	1	0	0	1	1	1	1	Helix-hairpin-helix	domain
HHH	PF00633.23	gi|345006355|ref|YP_004809208.1|	-	4e-05	23.3	7.9	0.016	15.0	0.3	3.1	3	0	0	3	3	2	2	Helix-hairpin-helix	motif
Cdd1	PF11731.8	gi|345006355|ref|YP_004809208.1|	-	0.00017	21.7	0.0	0.00043	20.5	0.0	1.7	1	0	0	1	1	1	1	Pathogenicity	locus
DNA_pol_lambd_f	PF10391.9	gi|345006355|ref|YP_004809208.1|	-	0.0021	17.9	0.2	0.026	14.3	0.2	2.7	1	1	0	1	1	1	1	Fingers	domain	of	DNA	polymerase	lambda
DUF4332	PF14229.6	gi|345006355|ref|YP_004809208.1|	-	0.073	13.3	0.0	0.16	12.2	0.0	1.6	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4332)
HEXIM	PF15313.6	gi|345006355|ref|YP_004809208.1|	-	0.076	13.2	1.6	0.17	12.1	0.1	2.1	2	0	0	2	2	2	0	Hexamethylene	bis-acetamide-inducible	protein
Rubredoxin_2	PF18073.1	gi|345006355|ref|YP_004809208.1|	-	0.087	12.6	0.1	19	5.1	0.0	2.7	2	0	0	2	2	2	0	Rubredoxin	metal	binding	domain
Toprim_4	PF13662.6	gi|345006355|ref|YP_004809208.1|	-	0.11	13.0	0.2	0.52	10.8	0.1	2.3	2	0	0	2	2	2	0	Toprim	domain
HHH_2	PF12826.7	gi|345006355|ref|YP_004809208.1|	-	0.19	11.9	1.0	0.55	10.4	0.1	2.3	2	1	0	2	2	2	0	Helix-hairpin-helix	motif
Zn-ribbon_8	PF09723.10	gi|345006355|ref|YP_004809208.1|	-	0.21	11.7	12.2	1.6	8.9	0.0	4.3	3	1	1	4	4	4	0	Zinc	ribbon	domain
Lar_restr_allev	PF14354.6	gi|345006355|ref|YP_004809208.1|	-	0.65	10.4	10.6	0.33	11.3	0.6	3.3	3	0	0	3	3	3	0	Restriction	alleviation	protein	Lar
Ogr_Delta	PF04606.12	gi|345006355|ref|YP_004809208.1|	-	1.6	8.8	8.5	0.55	10.2	0.1	3.3	3	0	0	3	3	3	0	Ogr/Delta-like	zinc	finger
TF_Zn_Ribbon	PF08271.12	gi|345006355|ref|YP_004809208.1|	-	3.6	7.2	7.4	7.9	6.1	0.1	3.5	3	0	0	3	3	3	0	TFIIB	zinc-binding
PhnA_Zn_Ribbon	PF08274.12	gi|345006355|ref|YP_004809208.1|	-	7.5	6.6	11.2	3.2	7.8	1.7	2.9	3	0	0	3	3	3	0	PhnA	Zinc-Ribbon
MarR_2	PF12802.7	gi|345006357|ref|YP_004809210.1|	-	1.1e-08	34.8	0.1	1.5e-08	34.4	0.1	1.2	1	0	0	1	1	1	1	MarR	family
HTH_IclR	PF09339.10	gi|345006357|ref|YP_004809210.1|	-	2.8e-07	30.2	0.2	4.4e-07	29.6	0.2	1.3	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
TrmB	PF01978.19	gi|345006357|ref|YP_004809210.1|	-	1.3e-05	25.0	0.0	1.9e-05	24.4	0.0	1.3	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
MarR	PF01047.22	gi|345006357|ref|YP_004809210.1|	-	2.4e-05	24.2	0.0	4.1e-05	23.4	0.0	1.3	1	0	0	1	1	1	1	MarR	family
HTH_Crp_2	PF13545.6	gi|345006357|ref|YP_004809210.1|	-	5.3e-05	23.1	0.1	7.4e-05	22.7	0.1	1.2	1	0	0	1	1	1	1	Crp-like	helix-turn-helix	domain
HTH_24	PF13412.6	gi|345006357|ref|YP_004809210.1|	-	0.00038	20.0	0.0	0.00068	19.2	0.0	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_20	PF12840.7	gi|345006357|ref|YP_004809210.1|	-	0.00072	19.6	0.1	0.0011	19.0	0.1	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
Rrf2	PF02082.20	gi|345006357|ref|YP_004809210.1|	-	0.00085	19.6	0.0	0.0012	19.1	0.0	1.2	1	0	0	1	1	1	1	Transcriptional	regulator
TFIIE_alpha	PF02002.17	gi|345006357|ref|YP_004809210.1|	-	0.0015	18.3	0.0	0.0063	16.4	0.0	1.7	1	1	0	2	2	2	1	TFIIE	alpha	subunit
HTH_5	PF01022.20	gi|345006357|ref|YP_004809210.1|	-	0.0042	16.9	0.0	0.0067	16.3	0.0	1.3	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
GntR	PF00392.21	gi|345006357|ref|YP_004809210.1|	-	0.0096	15.6	0.1	0.015	14.9	0.1	1.3	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	gntR	family
Fe_dep_repress	PF01325.19	gi|345006357|ref|YP_004809210.1|	-	0.014	15.6	0.0	0.03	14.5	0.0	1.5	1	0	0	1	1	1	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
Sulfolobus_pRN	PF05584.11	gi|345006357|ref|YP_004809210.1|	-	0.022	14.8	0.0	0.028	14.4	0.0	1.2	1	0	0	1	1	1	0	Sulfolobus	plasmid	regulatory	protein
HTH_27	PF13463.6	gi|345006357|ref|YP_004809210.1|	-	0.023	15.2	0.0	0.035	14.6	0.0	1.2	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
BLACT_WH	PF17778.1	gi|345006357|ref|YP_004809210.1|	-	0.1	12.6	0.0	0.2	11.7	0.0	1.4	1	0	0	1	1	1	0	Beta-lactamase	associated	winged	helix	domain
B-block_TFIIIC	PF04182.12	gi|345006357|ref|YP_004809210.1|	-	0.1	12.7	0.0	0.11	12.6	0.0	1.1	1	0	0	1	1	1	0	B-block	binding	subunit	of	TFIIIC
EAP30	PF04157.16	gi|345006357|ref|YP_004809210.1|	-	0.1	11.8	0.0	0.14	11.4	0.0	1.1	1	0	0	1	1	1	0	EAP30/Vps36	family
Rio2_N	PF09202.11	gi|345006357|ref|YP_004809210.1|	-	0.13	12.5	0.0	0.16	12.2	0.0	1.2	1	0	0	1	1	1	0	Rio2,	N-terminal
DprA_WH	PF17782.1	gi|345006357|ref|YP_004809210.1|	-	0.14	12.3	0.0	0.2	11.8	0.0	1.3	1	0	0	1	1	1	0	DprA	winged	helix	domain
TaqI_C	PF12950.7	gi|345006358|ref|YP_004809211.1|	-	3.7e-15	56.0	0.0	7.9e-15	55.0	0.0	1.6	1	0	0	1	1	1	1	TaqI-like	C-terminal	specificity	domain
Eco57I	PF07669.11	gi|345006358|ref|YP_004809211.1|	-	2.8e-12	47.1	0.0	7.6e-12	45.7	0.0	1.7	1	0	0	1	1	1	1	Eco57I	restriction-modification	methylase
N6_Mtase	PF02384.16	gi|345006358|ref|YP_004809211.1|	-	1.8e-11	43.9	0.0	1.8e-05	24.2	0.0	3.2	3	1	0	3	3	3	2	N-6	DNA	Methylase
HSDR_N	PF04313.14	gi|345006358|ref|YP_004809211.1|	-	0.0011	19.0	0.0	0.018	15.0	0.0	2.7	2	1	1	3	3	3	1	Type	I	restriction	enzyme	R	protein	N	terminus	(HSDR_N)
PcrB	PF01884.17	gi|345006359|ref|YP_004809212.1|	-	1.2e-56	191.7	0.2	1.4e-56	191.5	0.2	1.0	1	0	0	1	1	1	1	PcrB	family
tRNA-synt_2	PF00152.20	gi|345006360|ref|YP_004809213.1|	-	1.9e-86	290.0	0.0	2.3e-86	289.7	0.0	1.0	1	0	0	1	1	1	1	tRNA	synthetases	class	II	(D,	K	and	N)
tRNA_anti-codon	PF01336.25	gi|345006360|ref|YP_004809213.1|	-	7.8e-13	48.2	0.0	1.3e-12	47.5	0.0	1.4	1	0	0	1	1	1	1	OB-fold	nucleic	acid	binding	domain
tRNA-synt_2d	PF01409.20	gi|345006360|ref|YP_004809213.1|	-	0.0027	17.2	0.3	0.032	13.7	0.1	2.4	3	0	0	3	3	3	1	tRNA	synthetases	class	II	core	domain	(F)
DUF21	PF01595.20	gi|345006361|ref|YP_004809214.1|	-	8e-51	172.2	0.5	1.1e-50	171.7	0.5	1.2	1	0	0	1	1	1	1	Cyclin	M	transmembrane	N-terminal	domain
CorC_HlyC	PF03471.17	gi|345006361|ref|YP_004809214.1|	-	8.7e-22	76.9	1.5	2.6e-21	75.4	1.5	1.9	1	0	0	1	1	1	1	Transporter	associated	domain
CBS	PF00571.28	gi|345006361|ref|YP_004809214.1|	-	6.6e-13	48.9	4.3	6.5e-07	29.7	0.1	2.9	3	0	0	3	3	3	2	CBS	domain
PHB_acc_N	PF07879.11	gi|345006361|ref|YP_004809214.1|	-	0.048	13.7	0.1	0.18	11.9	0.1	2.0	1	0	0	1	1	1	0	PHB/PHA	accumulation	regulator	DNA-binding	domain
GatB_Yqey	PF02637.18	gi|345006361|ref|YP_004809214.1|	-	0.17	11.8	2.7	1	9.2	0.0	2.4	2	0	0	2	2	2	0	GatB	domain
GST_N_3	PF13417.6	gi|345006362|ref|YP_004809215.1|	-	3.1e-14	53.1	0.0	3.5e-14	53.0	0.0	1.0	1	0	0	1	1	1	1	Glutathione	S-transferase,	N-terminal	domain
Glutaredoxin	PF00462.24	gi|345006362|ref|YP_004809215.1|	-	4.6e-12	46.0	0.1	6.3e-12	45.5	0.1	1.2	1	0	0	1	1	1	1	Glutaredoxin
GST_N_2	PF13409.6	gi|345006362|ref|YP_004809215.1|	-	2.3e-11	43.8	0.0	2.7e-11	43.6	0.0	1.1	1	0	0	1	1	1	1	Glutathione	S-transferase,	N-terminal	domain
GST_N	PF02798.20	gi|345006362|ref|YP_004809215.1|	-	1.7e-05	25.1	0.0	2e-05	24.8	0.0	1.1	1	0	0	1	1	1	1	Glutathione	S-transferase,	N-terminal	domain
DUF836	PF05768.14	gi|345006362|ref|YP_004809215.1|	-	0.041	14.3	0.0	0.051	14.0	0.0	1.3	1	0	0	1	1	1	0	Glutaredoxin-like	domain	(DUF836)
SapB_1	PF05184.15	gi|345006362|ref|YP_004809215.1|	-	0.1	12.6	0.3	0.54	10.3	0.1	2.0	2	0	0	2	2	2	0	Saposin-like	type	B,	region	1
AhpC-TSA	PF00578.21	gi|345006363|ref|YP_004809216.1|	-	8.9e-18	64.4	0.0	1.1e-17	64.1	0.0	1.1	1	0	0	1	1	1	1	AhpC/TSA	family
Redoxin	PF08534.10	gi|345006363|ref|YP_004809216.1|	-	2.6e-06	27.2	0.0	1.4e-05	24.8	0.0	1.9	1	1	0	1	1	1	1	Redoxin
AhpC-TSA_2	PF13911.6	gi|345006363|ref|YP_004809216.1|	-	0.00057	20.0	0.0	0.017	15.2	0.0	2.1	1	1	1	2	2	2	1	AhpC/TSA	antioxidant	enzyme
Sua5_yciO_yrdC	PF01300.18	gi|345006364|ref|YP_004809217.1|	-	1.3e-44	151.9	0.0	1.4e-44	151.7	0.0	1.0	1	0	0	1	1	1	1	Telomere	recombination
Cas_Cas4	PF01930.17	gi|345006365|ref|YP_004809218.1|	-	1e-06	28.9	0.0	1.5e-05	25.2	0.0	2.0	2	0	0	2	2	2	1	Domain	of	unknown	function	DUF83
BioY	PF02632.14	gi|345006367|ref|YP_004809220.1|	-	8.7e-34	116.5	20.4	1.5e-33	115.7	20.4	1.3	1	0	0	1	1	1	1	BioY	family
ECF_trnsprt	PF12822.7	gi|345006367|ref|YP_004809220.1|	-	0.18	11.9	24.0	3.8	7.6	24.0	2.1	1	1	0	1	1	1	0	ECF	transporter,	substrate-specific	component
ABC_tran	PF00005.27	gi|345006368|ref|YP_004809221.1|	-	3.3e-26	92.4	0.0	4.3e-26	92.1	0.0	1.1	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|345006368|ref|YP_004809221.1|	-	2.7e-10	40.6	0.6	4.4e-05	23.5	0.1	2.1	1	1	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|345006368|ref|YP_004809221.1|	-	6.6e-06	25.7	0.0	3.4e-05	23.4	0.0	1.9	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_16	PF13191.6	gi|345006368|ref|YP_004809221.1|	-	8.1e-05	23.1	0.3	0.00015	22.2	0.3	1.4	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_22	PF13401.6	gi|345006368|ref|YP_004809221.1|	-	0.00029	21.1	0.1	0.00067	19.9	0.1	1.7	1	1	0	1	1	1	1	AAA	domain
SbcCD_C	PF13558.6	gi|345006368|ref|YP_004809221.1|	-	0.001	19.2	0.2	0.022	15.0	0.2	2.2	1	1	0	1	1	1	1	Putative	exonuclease	SbcCD,	C	subunit
cobW	PF02492.19	gi|345006368|ref|YP_004809221.1|	-	0.0014	18.2	0.1	0.0027	17.3	0.1	1.5	1	0	0	1	1	1	1	CobW/HypB/UreG,	nucleotide-binding	domain
AAA_33	PF13671.6	gi|345006368|ref|YP_004809221.1|	-	0.0014	18.8	0.2	0.0031	17.7	0.2	1.9	1	1	0	1	1	1	1	AAA	domain
AAA_29	PF13555.6	gi|345006368|ref|YP_004809221.1|	-	0.0021	17.8	0.0	0.0035	17.1	0.0	1.3	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_25	PF13481.6	gi|345006368|ref|YP_004809221.1|	-	0.0025	17.4	0.3	0.005	16.4	0.3	1.8	1	1	0	1	1	1	1	AAA	domain
AAA_18	PF13238.6	gi|345006368|ref|YP_004809221.1|	-	0.0027	18.2	0.1	0.041	14.4	0.0	2.1	2	0	0	2	2	2	1	AAA	domain
AAA_15	PF13175.6	gi|345006368|ref|YP_004809221.1|	-	0.0053	16.5	0.0	0.0069	16.1	0.0	1.1	1	0	0	1	1	1	1	AAA	ATPase	domain
AAA_28	PF13521.6	gi|345006368|ref|YP_004809221.1|	-	0.0058	16.9	0.0	0.0097	16.2	0.0	1.4	1	0	0	1	1	1	1	AAA	domain
AAA_30	PF13604.6	gi|345006368|ref|YP_004809221.1|	-	0.0069	16.1	0.4	0.012	15.3	0.3	1.8	1	1	0	1	1	1	1	AAA	domain
AAA_23	PF13476.6	gi|345006368|ref|YP_004809221.1|	-	0.0088	16.6	0.0	0.014	16.0	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
SRP54	PF00448.22	gi|345006368|ref|YP_004809221.1|	-	0.02	14.5	0.0	0.042	13.5	0.0	1.4	1	0	0	1	1	1	0	SRP54-type	protein,	GTPase	domain
NACHT	PF05729.12	gi|345006368|ref|YP_004809221.1|	-	0.028	14.3	0.0	0.046	13.7	0.0	1.3	1	0	0	1	1	1	0	NACHT	domain
AAA_13	PF13166.6	gi|345006368|ref|YP_004809221.1|	-	0.029	13.0	0.0	0.038	12.6	0.0	1.1	1	0	0	1	1	1	0	AAA	domain
Mg_chelatase	PF01078.21	gi|345006368|ref|YP_004809221.1|	-	0.04	13.3	0.0	0.07	12.5	0.0	1.3	1	0	0	1	1	1	0	Magnesium	chelatase,	subunit	ChlI
DLIC	PF05783.11	gi|345006368|ref|YP_004809221.1|	-	0.045	12.6	0.0	0.063	12.1	0.0	1.1	1	0	0	1	1	1	0	Dynein	light	intermediate	chain	(DLIC)
RsgA_GTPase	PF03193.16	gi|345006368|ref|YP_004809221.1|	-	0.053	13.4	0.0	0.081	12.8	0.0	1.3	1	0	0	1	1	1	0	RsgA	GTPase
AAA_5	PF07728.14	gi|345006368|ref|YP_004809221.1|	-	0.063	13.3	0.0	0.13	12.3	0.0	1.6	1	0	0	1	1	1	0	AAA	domain	(dynein-related	subfamily)
DUF3584	PF12128.8	gi|345006368|ref|YP_004809221.1|	-	0.077	10.5	0.0	0.098	10.2	0.0	1.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3584)
FtsK_SpoIIIE	PF01580.18	gi|345006368|ref|YP_004809221.1|	-	0.078	12.3	0.0	0.14	11.5	0.0	1.4	1	0	0	1	1	1	0	FtsK/SpoIIIE	family
AAA_24	PF13479.6	gi|345006368|ref|YP_004809221.1|	-	0.078	12.7	0.0	0.12	12.1	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
NTPase_1	PF03266.15	gi|345006368|ref|YP_004809221.1|	-	0.14	12.1	0.2	0.28	11.1	0.1	1.6	2	0	0	2	2	1	0	NTPase
Roc	PF08477.13	gi|345006368|ref|YP_004809221.1|	-	0.15	12.3	0.0	0.24	11.6	0.0	1.4	1	0	0	1	1	1	0	Ras	of	Complex,	Roc,	domain	of	DAPkinase
TsaE	PF02367.17	gi|345006368|ref|YP_004809221.1|	-	0.16	12.0	0.0	0.24	11.4	0.0	1.3	1	0	0	1	1	1	0	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
ATP_bind_1	PF03029.17	gi|345006368|ref|YP_004809221.1|	-	0.19	11.5	0.1	0.28	10.9	0.1	1.2	1	0	0	1	1	1	0	Conserved	hypothetical	ATP	binding	protein
G-alpha	PF00503.20	gi|345006368|ref|YP_004809221.1|	-	0.21	10.7	0.0	0.29	10.2	0.0	1.1	1	0	0	1	1	1	0	G-protein	alpha	subunit
Rad17	PF03215.15	gi|345006368|ref|YP_004809221.1|	-	0.24	11.3	0.0	0.34	10.8	0.0	1.2	1	0	0	1	1	1	0	Rad17	P-loop	domain
DAP3	PF10236.9	gi|345006368|ref|YP_004809221.1|	-	0.25	10.5	0.0	0.35	10.0	0.0	1.1	1	0	0	1	1	1	0	Mitochondrial	ribosomal	death-associated	protein	3
CbiQ	PF02361.16	gi|345006369|ref|YP_004809222.1|	-	1.8e-19	70.2	4.8	2.6e-19	69.7	4.8	1.2	1	0	0	1	1	1	1	Cobalt	transport	protein
CCG	PF02754.16	gi|345006371|ref|YP_004809224.1|	-	1.4e-16	60.5	0.0	7e-11	42.2	0.1	2.5	2	0	0	2	2	2	2	Cysteine-rich	domain
Fer4_8	PF13183.6	gi|345006371|ref|YP_004809224.1|	-	5.7e-10	39.5	4.5	1.5e-09	38.2	4.5	1.7	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_10	PF13237.6	gi|345006371|ref|YP_004809224.1|	-	6.4e-10	39.0	9.3	9.5e-09	35.2	9.1	2.7	2	1	1	3	3	3	2	4Fe-4S	dicluster	domain
Fer4	PF00037.27	gi|345006371|ref|YP_004809224.1|	-	1e-09	37.8	11.9	2.2e-05	24.1	2.0	2.7	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_9	PF13187.6	gi|345006371|ref|YP_004809224.1|	-	2.1e-09	37.4	5.2	2.1e-09	37.4	5.2	2.0	2	0	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_7	PF12838.7	gi|345006371|ref|YP_004809224.1|	-	6.6e-08	33.0	21.6	5.2e-07	30.2	10.9	2.4	2	1	1	3	3	2	2	4Fe-4S	dicluster	domain
Fer4_17	PF13534.6	gi|345006371|ref|YP_004809224.1|	-	3.5e-06	27.4	7.0	1.5e-05	25.4	7.1	2.0	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_6	PF12837.7	gi|345006371|ref|YP_004809224.1|	-	2.1e-05	24.4	23.2	0.00017	21.5	3.2	2.8	3	0	0	3	3	2	2	4Fe-4S	binding	domain
Fer4_21	PF14697.6	gi|345006371|ref|YP_004809224.1|	-	4.1e-05	23.6	10.9	0.0078	16.3	0.4	2.9	3	0	0	3	3	3	2	4Fe-4S	dicluster	domain
Fer4_16	PF13484.6	gi|345006371|ref|YP_004809224.1|	-	6.2e-05	23.8	10.1	0.0014	19.6	11.0	2.4	1	1	1	2	2	2	2	4Fe-4S	double	cluster	binding	domain
Fer4_2	PF12797.7	gi|345006371|ref|YP_004809224.1|	-	0.0001	22.1	20.2	0.00042	20.3	2.8	2.8	3	0	0	3	3	2	2	4Fe-4S	binding	domain
Fer4_4	PF12800.7	gi|345006371|ref|YP_004809224.1|	-	0.0002	21.6	17.4	0.0023	18.3	0.9	3.0	3	0	0	3	3	3	2	4Fe-4S	binding	domain
Fer4_13	PF13370.6	gi|345006371|ref|YP_004809224.1|	-	0.0066	17.0	8.7	1.1	9.9	0.2	2.8	2	0	0	2	2	2	2	4Fe-4S	single	cluster	domain	of	Ferredoxin	I
Fer4_22	PF17179.4	gi|345006371|ref|YP_004809224.1|	-	0.038	14.8	0.7	0.038	14.8	0.7	2.8	3	0	0	3	3	2	0	4Fe-4S	dicluster	domain
Fer4_18	PF13746.6	gi|345006371|ref|YP_004809224.1|	-	0.066	13.4	9.3	1.4	9.1	1.4	2.5	1	1	1	2	2	2	0	4Fe-4S	dicluster	domain
Fer4_3	PF12798.7	gi|345006371|ref|YP_004809224.1|	-	0.21	12.6	23.7	0.21	12.6	4.3	2.9	3	0	0	3	3	2	0	4Fe-4S	binding	domain
Fer4_15	PF13459.6	gi|345006371|ref|YP_004809224.1|	-	0.28	12.0	10.1	0.22	12.3	0.9	3.2	2	1	0	2	2	2	0	4Fe-4S	single	cluster	domain
DUF429	PF04250.13	gi|345006372|ref|YP_004809225.1|	-	7.5e-07	29.2	0.2	2.4e-06	27.5	0.2	1.7	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF429)
Radical_SAM	PF04055.21	gi|345006373|ref|YP_004809226.1|	-	1.3e-17	64.7	0.0	3.8e-17	63.2	0.0	1.9	1	0	0	1	1	1	1	Radical	SAM	superfamily
HHH	PF00633.23	gi|345006373|ref|YP_004809226.1|	-	0.0023	17.7	0.0	0.0083	15.9	0.0	2.0	1	0	0	1	1	1	1	Helix-hairpin-helix	motif
HHH_3	PF12836.7	gi|345006373|ref|YP_004809226.1|	-	0.0097	16.1	0.0	0.023	15.0	0.0	1.6	1	0	0	1	1	1	1	Helix-hairpin-helix	motif
Lactamase_B	PF00753.27	gi|345006374|ref|YP_004809227.1|	-	6.9e-18	65.4	5.3	4.4e-13	49.7	4.6	2.4	2	0	0	2	2	2	2	Metallo-beta-lactamase	superfamily
BLACT_WH	PF17778.1	gi|345006374|ref|YP_004809227.1|	-	0.00014	21.7	0.1	0.00033	20.6	0.1	1.6	1	0	0	1	1	1	1	Beta-lactamase	associated	winged	helix	domain
Lactamase_B_3	PF13483.6	gi|345006374|ref|YP_004809227.1|	-	0.13	12.1	0.1	0.2	11.6	0.1	1.3	1	0	0	1	1	1	0	Beta-lactamase	superfamily	domain
HisKA_7TM	PF16927.5	gi|345006375|ref|YP_004809228.1|	-	5.6e-50	170.4	13.7	7e-50	170.1	13.7	1.1	1	0	0	1	1	1	1	N-terminal	7TM	region	of	histidine	kinase
HATPase_c	PF02518.26	gi|345006375|ref|YP_004809228.1|	-	7.3e-12	45.8	0.0	1.3e-11	45.0	0.0	1.4	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HATPase_c_2	PF13581.6	gi|345006375|ref|YP_004809228.1|	-	4.4e-06	26.7	1.9	9.7e-06	25.6	0.0	2.1	1	1	1	2	2	2	1	Histidine	kinase-like	ATPase	domain
PAS_4	PF08448.10	gi|345006375|ref|YP_004809228.1|	-	0.00013	22.2	2.3	0.0079	16.4	0.3	3.0	2	1	0	2	2	2	1	PAS	fold
HisKA	PF00512.25	gi|345006375|ref|YP_004809228.1|	-	0.0012	18.9	0.4	0.0025	17.8	0.4	1.5	1	0	0	1	1	1	1	His	Kinase	A	(phospho-acceptor)	domain
PAS	PF00989.25	gi|345006375|ref|YP_004809228.1|	-	0.057	13.4	0.1	0.3	11.1	0.0	2.2	2	0	0	2	2	2	0	PAS	fold
CxxCxxCC	PF03692.15	gi|345006376|ref|YP_004809229.1|	-	2.9e-13	50.3	0.0	5.7e-13	49.4	0.0	1.5	1	1	0	1	1	1	1	Putative	zinc-	or	iron-chelating	domain
TRAM	PF01938.20	gi|345006377|ref|YP_004809230.1|	-	3.8e-13	49.2	3.4	3.8e-13	49.2	3.4	1.7	2	0	0	2	2	2	1	TRAM	domain
Hexapep	PF00132.24	gi|345006377|ref|YP_004809230.1|	-	0.087	12.6	1.6	0.11	12.3	0.4	1.8	2	0	0	2	2	2	0	Bacterial	transferase	hexapeptide	(six	repeats)
Methyltransf_11	PF08241.12	gi|345006378|ref|YP_004809231.1|	-	2.4e-24	85.8	0.0	4.1e-24	85.0	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.6	gi|345006378|ref|YP_004809231.1|	-	3.5e-24	85.3	0.0	5.3e-24	84.8	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.6	gi|345006378|ref|YP_004809231.1|	-	1.7e-17	63.7	0.0	2.1e-17	63.3	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Ubie_methyltran	PF01209.18	gi|345006378|ref|YP_004809231.1|	-	1.3e-14	54.1	0.0	1.9e-14	53.6	0.0	1.2	1	0	0	1	1	1	1	ubiE/COQ5	methyltransferase	family
Methyltransf_12	PF08242.12	gi|345006378|ref|YP_004809231.1|	-	5.2e-13	49.6	0.0	7.5e-13	49.1	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.6	gi|345006378|ref|YP_004809231.1|	-	7.5e-12	45.4	0.0	1.1e-11	44.9	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
UPF0020	PF01170.18	gi|345006378|ref|YP_004809231.1|	-	3.5e-07	30.1	0.0	3.4e-06	26.9	0.0	2.2	2	1	1	3	3	3	1	Putative	RNA	methylase	family	UPF0020
CMAS	PF02353.20	gi|345006378|ref|YP_004809231.1|	-	0.00012	21.5	0.0	0.00016	21.0	0.0	1.2	1	0	0	1	1	1	1	Mycolic	acid	cyclopropane	synthetase
Methyltransf_20	PF12147.8	gi|345006378|ref|YP_004809231.1|	-	0.00049	19.3	0.0	0.00079	18.7	0.0	1.4	1	0	0	1	1	1	1	Putative	methyltransferase
Methyltransf_9	PF08003.11	gi|345006378|ref|YP_004809231.1|	-	0.00081	18.4	0.0	0.0011	18.0	0.0	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1698)
RrnaAD	PF00398.20	gi|345006378|ref|YP_004809231.1|	-	0.00094	18.3	0.0	0.0012	18.0	0.0	1.1	1	0	0	1	1	1	1	Ribosomal	RNA	adenine	dimethylase
Methyltransf_4	PF02390.17	gi|345006378|ref|YP_004809231.1|	-	0.0012	18.4	0.0	0.0019	17.7	0.0	1.4	1	0	0	1	1	1	1	Putative	methyltransferase
NodS	PF05401.11	gi|345006378|ref|YP_004809231.1|	-	0.0023	17.6	0.0	0.003	17.2	0.0	1.1	1	0	0	1	1	1	1	Nodulation	protein	S	(NodS)
MTS	PF05175.14	gi|345006378|ref|YP_004809231.1|	-	0.0024	17.4	0.0	0.0032	17.0	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	small	domain
MetW	PF07021.12	gi|345006378|ref|YP_004809231.1|	-	0.0027	17.3	0.0	0.0041	16.8	0.0	1.3	1	0	0	1	1	1	1	Methionine	biosynthesis	protein	MetW
tRNA_U5-meth_tr	PF05958.11	gi|345006378|ref|YP_004809231.1|	-	0.0031	16.5	0.0	0.0046	16.0	0.0	1.2	1	0	0	1	1	1	1	tRNA	(Uracil-5-)-methyltransferase
Methyltransf_15	PF09445.10	gi|345006378|ref|YP_004809231.1|	-	0.0079	15.8	0.0	0.01	15.4	0.0	1.2	1	0	0	1	1	1	1	RNA	cap	guanine-N2	methyltransferase
TPMT	PF05724.11	gi|345006378|ref|YP_004809231.1|	-	0.013	15.1	0.0	0.019	14.7	0.0	1.2	1	0	0	1	1	1	0	Thiopurine	S-methyltransferase	(TPMT)
TehB	PF03848.14	gi|345006378|ref|YP_004809231.1|	-	0.029	13.8	0.0	0.036	13.5	0.0	1.2	1	0	0	1	1	1	0	Tellurite	resistance	protein	TehB
FtsJ	PF01728.19	gi|345006378|ref|YP_004809231.1|	-	0.063	13.4	0.0	0.076	13.1	0.0	1.2	1	0	0	1	1	1	0	FtsJ-like	methyltransferase
Methyltransf_32	PF13679.6	gi|345006378|ref|YP_004809231.1|	-	0.074	13.0	0.0	0.1	12.5	0.0	1.2	1	0	0	1	1	1	0	Methyltransferase	domain
Methyltransf_18	PF12847.7	gi|345006378|ref|YP_004809231.1|	-	0.13	12.1	0.0	0.18	11.7	0.0	1.2	1	0	0	1	1	1	0	Methyltransferase	domain
DUF938	PF06080.12	gi|345006378|ref|YP_004809231.1|	-	0.19	11.5	0.0	0.65	9.7	0.0	1.8	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF938)
Putative_PNPOx	PF01243.20	gi|345006380|ref|YP_004809233.1|	-	8.3e-18	64.4	0.0	1e-17	64.1	0.0	1.1	1	0	0	1	1	1	1	Pyridoxamine	5'-phosphate	oxidase
Pyridox_ox_2	PF12900.7	gi|345006380|ref|YP_004809233.1|	-	1.5e-06	28.2	0.1	1.7e-06	28.0	0.1	1.0	1	0	0	1	1	1	1	Pyridoxamine	5'-phosphate	oxidase
Pyrid_ox_like	PF16242.5	gi|345006380|ref|YP_004809233.1|	-	0.00017	21.2	0.0	0.00018	21.1	0.0	1.1	1	0	0	1	1	1	1	Pyridoxamine	5'-phosphate	oxidase	like
F420H2_quin_red	PF04075.14	gi|345006380|ref|YP_004809233.1|	-	0.051	13.7	0.1	0.077	13.1	0.1	1.4	1	1	0	1	1	1	0	F420H(2)-dependent	quinone	reductase
Terminase_6C	PF17289.2	gi|345006380|ref|YP_004809233.1|	-	0.065	13.3	0.0	0.088	12.9	0.0	1.2	1	0	0	1	1	1	0	Terminase	RNaseH-like	domain
Glycos_transf_2	PF00535.26	gi|345006381|ref|YP_004809234.1|	-	3.2e-15	56.4	0.1	4.8e-15	55.8	0.1	1.3	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_tranf_2_3	PF13641.6	gi|345006381|ref|YP_004809234.1|	-	2.9e-05	24.1	3.1	0.001	19.0	0.2	2.1	1	1	1	2	2	2	2	Glycosyltransferase	like	family	2
Glyco_tranf_2_2	PF10111.9	gi|345006381|ref|YP_004809234.1|	-	0.0093	15.5	0.0	0.013	15.0	0.0	1.2	1	0	0	1	1	1	1	Glycosyltransferase	like	family	2
DDE_Tnp_1	PF01609.21	gi|345006382|ref|YP_004809235.1|	-	0.027	14.1	0.1	0.14	11.8	0.0	2.1	1	1	0	1	1	1	0	Transposase	DDE	domain
Amidohydro_2	PF04909.14	gi|345006383|ref|YP_004809236.1|	-	7.6e-06	25.9	2.4	1.5e-05	24.9	2.4	1.7	1	1	0	1	1	1	1	Amidohydrolase
Pribosyltran	PF00156.27	gi|345006384|ref|YP_004809237.1|	-	7.4e-18	64.6	0.0	1.6e-17	63.5	0.0	1.5	2	0	0	2	2	2	1	Phosphoribosyl	transferase	domain
GATase	PF00117.28	gi|345006385|ref|YP_004809238.1|	-	6.8e-19	68.4	0.0	9.2e-19	67.9	0.0	1.1	1	0	0	1	1	1	1	Glutamine	amidotransferase	class-I
Peptidase_C26	PF07722.13	gi|345006385|ref|YP_004809238.1|	-	2.2e-08	34.1	0.0	3.3e-07	30.3	0.0	2.5	2	1	0	2	2	2	1	Peptidase	C26
DJ-1_PfpI	PF01965.24	gi|345006385|ref|YP_004809238.1|	-	0.0015	18.4	0.0	0.01	15.7	0.0	1.9	2	0	0	2	2	2	1	DJ-1/PfpI	family
HTS	PF04204.16	gi|345006385|ref|YP_004809238.1|	-	0.014	14.3	0.0	0.061	12.3	0.0	1.8	1	1	0	1	1	1	0	Homoserine	O-succinyltransferase
GATase_3	PF07685.14	gi|345006385|ref|YP_004809238.1|	-	0.021	14.4	0.0	0.036	13.7	0.0	1.3	1	0	0	1	1	1	0	CobB/CobQ-like	glutamine	amidotransferase	domain
Acyl-CoA_dh_1	PF00441.24	gi|345006386|ref|YP_004809239.1|	-	7.5e-32	110.6	1.7	1.2e-31	109.9	1.7	1.3	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	C-terminal	domain
Acyl-CoA_dh_N	PF02771.16	gi|345006386|ref|YP_004809239.1|	-	1.1e-24	87.2	0.0	2.2e-24	86.3	0.0	1.5	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	N-terminal	domain
Acyl-CoA_dh_M	PF02770.19	gi|345006386|ref|YP_004809239.1|	-	1.3e-22	79.8	0.0	2.2e-22	79.0	0.0	1.4	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	middle	domain
Acyl-CoA_dh_2	PF08028.11	gi|345006386|ref|YP_004809239.1|	-	5.5e-09	36.4	1.2	1e-08	35.5	1.2	1.5	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	C-terminal	domain
DUF393	PF04134.12	gi|345006388|ref|YP_004809241.1|	-	8.9e-11	43.1	0.2	1.1e-10	42.9	0.2	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function,	DUF393
YdjO	PF14169.6	gi|345006389|ref|YP_004809242.1|	-	0.3	10.8	3.1	1.5	8.7	3.1	1.9	1	1	0	1	1	1	0	Cold-inducible	protein	YdjO
HSP20	PF00011.21	gi|345006390|ref|YP_004809243.1|	-	1.3e-05	25.2	0.0	2.6e-05	24.3	0.0	1.5	1	1	0	1	1	1	1	Hsp20/alpha	crystallin	family
eIF-5a	PF01287.20	gi|345006390|ref|YP_004809243.1|	-	0.082	13.0	0.1	0.21	11.7	0.0	1.6	2	0	0	2	2	2	0	Eukaryotic	elongation	factor	5A	hypusine,	DNA-binding	OB	fold
DAO	PF01266.24	gi|345006391|ref|YP_004809244.1|	-	4.9e-41	141.5	11.8	5.6e-41	141.3	11.8	1.0	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
Pyr_redox_2	PF07992.14	gi|345006391|ref|YP_004809244.1|	-	5.9e-07	29.0	0.1	8.7e-06	25.2	0.1	2.3	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_binding_8	PF13450.6	gi|345006391|ref|YP_004809244.1|	-	1e-06	28.9	0.7	6.7e-06	26.2	0.3	2.4	2	0	0	2	2	2	1	NAD(P)-binding	Rossmann-like	domain
Pyr_redox	PF00070.27	gi|345006391|ref|YP_004809244.1|	-	1.1e-05	25.8	0.1	0.00027	21.4	0.2	2.7	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_binding_3	PF01494.19	gi|345006391|ref|YP_004809244.1|	-	0.00014	21.2	0.3	0.00022	20.6	0.3	1.3	1	0	0	1	1	1	1	FAD	binding	domain
ApbA	PF02558.16	gi|345006391|ref|YP_004809244.1|	-	0.00015	21.4	0.0	0.00028	20.5	0.0	1.4	1	0	0	1	1	1	1	Ketopantoate	reductase	PanE/ApbA
3HCDH_N	PF02737.18	gi|345006391|ref|YP_004809244.1|	-	0.00029	20.8	0.1	0.00054	19.9	0.1	1.5	1	0	0	1	1	1	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
Pyr_redox_3	PF13738.6	gi|345006391|ref|YP_004809244.1|	-	0.00033	20.0	0.1	0.00052	19.4	0.1	1.3	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
HI0933_like	PF03486.14	gi|345006391|ref|YP_004809244.1|	-	0.00049	18.9	0.5	0.0022	16.8	0.5	1.8	2	0	0	2	2	2	1	HI0933-like	protein
GIDA	PF01134.22	gi|345006391|ref|YP_004809244.1|	-	0.0012	18.0	0.0	0.0017	17.5	0.0	1.3	1	0	0	1	1	1	1	Glucose	inhibited	division	protein	A
NAD_binding_7	PF13241.6	gi|345006391|ref|YP_004809244.1|	-	0.0036	17.7	0.2	0.0091	16.4	0.1	1.7	2	0	0	2	2	2	1	Putative	NAD(P)-binding
FAD_oxidored	PF12831.7	gi|345006391|ref|YP_004809244.1|	-	0.0048	16.3	1.2	0.0077	15.6	1.2	1.3	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
ThiF	PF00899.21	gi|345006391|ref|YP_004809244.1|	-	0.015	14.7	0.1	0.024	14.0	0.1	1.3	1	0	0	1	1	1	0	ThiF	family
Amino_oxidase	PF01593.24	gi|345006391|ref|YP_004809244.1|	-	0.035	13.4	1.6	0.55	9.5	0.5	2.1	2	0	0	2	2	2	0	Flavin	containing	amine	oxidoreductase
NAD_Gly3P_dh_N	PF01210.23	gi|345006391|ref|YP_004809244.1|	-	0.039	13.9	0.0	0.065	13.2	0.0	1.3	1	0	0	1	1	1	0	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
FAD_binding_2	PF00890.24	gi|345006391|ref|YP_004809244.1|	-	0.042	12.9	7.5	0.35	9.9	7.4	2.3	1	1	0	1	1	1	0	FAD	binding	domain
AlaDh_PNT_C	PF01262.21	gi|345006391|ref|YP_004809244.1|	-	0.078	12.3	0.5	0.12	11.6	0.5	1.3	1	0	0	1	1	1	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
XdhC_C	PF13478.6	gi|345006391|ref|YP_004809244.1|	-	0.11	13.0	0.4	1.2	9.6	0.1	2.4	2	1	0	2	2	2	0	XdhC	Rossmann	domain
2-Hacid_dh_C	PF02826.19	gi|345006391|ref|YP_004809244.1|	-	0.16	11.3	0.1	0.32	10.3	0.1	1.5	1	0	0	1	1	1	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
Thi4	PF01946.17	gi|345006391|ref|YP_004809244.1|	-	0.17	11.1	0.1	0.34	10.1	0.1	1.5	1	0	0	1	1	1	0	Thi4	family
Bac_luciferase	PF00296.20	gi|345006392|ref|YP_004809245.1|	-	0.00011	21.7	2.2	0.00022	20.8	2.2	1.6	1	1	0	1	1	1	1	Luciferase-like	monooxygenase
NUDIX	PF00293.28	gi|345006393|ref|YP_004809246.1|	-	4.5e-15	55.9	0.4	6.5e-15	55.3	0.4	1.2	1	0	0	1	1	1	1	NUDIX	domain
Cpn60_TCP1	PF00118.24	gi|345006395|ref|YP_004809248.1|	-	1.3e-159	531.9	11.4	1.5e-159	531.8	11.4	1.0	1	0	0	1	1	1	1	TCP-1/cpn60	chaperonin	family
DHquinase_I	PF01487.15	gi|345006397|ref|YP_004809250.1|	-	1.5e-40	139.9	0.0	1.7e-40	139.7	0.0	1.0	1	0	0	1	1	1	1	Type	I	3-dehydroquinase
Peripla_BP_2	PF01497.18	gi|345006398|ref|YP_004809251.1|	-	1.2e-17	64.3	0.0	1.4e-17	64.1	0.0	1.0	1	0	0	1	1	1	1	Periplasmic	binding	protein
NTPase_I-T	PF01931.18	gi|345006399|ref|YP_004809252.1|	-	9.9e-50	168.5	0.3	1.1e-49	168.4	0.3	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF84
LPG_synthase_TM	PF03706.13	gi|345006400|ref|YP_004809253.1|	-	1.8e-38	132.8	36.9	2.4e-38	132.4	36.9	1.1	1	0	0	1	1	1	1	Lysylphosphatidylglycerol	synthase	TM	region
Glycos_transf_2	PF00535.26	gi|345006400|ref|YP_004809253.1|	-	1e-24	87.3	0.0	1.9e-24	86.3	0.0	1.5	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_tranf_2_3	PF13641.6	gi|345006400|ref|YP_004809253.1|	-	1.1e-08	35.2	0.4	3.6e-08	33.6	0.0	2.1	2	1	0	2	2	2	1	Glycosyltransferase	like	family	2
Glyco_tranf_2_4	PF13704.6	gi|345006400|ref|YP_004809253.1|	-	0.022	15.3	0.0	0.045	14.3	0.0	1.5	1	0	0	1	1	1	0	Glycosyl	transferase	family	2
CAP59_mtransfer	PF11735.8	gi|345006400|ref|YP_004809253.1|	-	0.033	13.9	0.0	2.4	7.8	0.0	2.2	1	1	0	1	1	1	0	Cryptococcal	mannosyltransferase	1
eIF3_N	PF09440.10	gi|345006401|ref|YP_004809254.1|	-	0.063	13.7	0.0	0.079	13.4	0.0	1.0	1	0	0	1	1	1	0	eIF3	subunit	6	N	terminal	domain
zinc_ribbon_2	PF13240.6	gi|345006402|ref|YP_004809255.1|	-	3.2e-05	23.5	4.1	4.6e-05	23.0	4.1	1.3	1	0	0	1	1	1	1	zinc-ribbon	domain
DZR	PF12773.7	gi|345006402|ref|YP_004809255.1|	-	7.7e-05	22.6	0.4	8.2e-05	22.6	0.4	1.2	1	0	0	1	1	1	1	Double	zinc	ribbon
zinc_ribbon_15	PF17032.5	gi|345006402|ref|YP_004809255.1|	-	0.0023	18.7	0.3	0.0023	18.6	0.3	1.1	1	0	0	1	1	1	1	zinc-ribbon	family
zf-ribbon_3	PF13248.6	gi|345006402|ref|YP_004809255.1|	-	0.0082	15.5	2.2	0.013	14.9	2.2	1.4	1	0	0	1	1	1	1	zinc-ribbon	domain
PriA_CRR	PF18319.1	gi|345006402|ref|YP_004809255.1|	-	0.036	14.1	3.9	0.17	11.9	0.3	2.2	2	0	0	2	2	2	0	PriA	DNA	helicase	Cys-rich	region	(CRR)	domain
A2L_zn_ribbon	PF08792.10	gi|345006402|ref|YP_004809255.1|	-	0.5	10.1	4.7	1.3	8.8	4.7	1.7	1	1	0	1	1	1	0	A2L	zinc	ribbon	domain
HTH_24	PF13412.6	gi|345006403|ref|YP_004809256.1|	-	1.2e-08	34.3	0.0	6.8e-05	22.4	0.0	2.2	2	0	0	2	2	2	2	Winged	helix-turn-helix	DNA-binding
MarR_2	PF12802.7	gi|345006403|ref|YP_004809256.1|	-	1.7e-08	34.2	1.4	1.6e-06	27.9	0.1	2.6	3	0	0	3	3	2	1	MarR	family
HTH_20	PF12840.7	gi|345006403|ref|YP_004809256.1|	-	2.3e-08	34.0	0.5	8.4e-05	22.6	0.1	2.4	2	0	0	2	2	2	2	Helix-turn-helix	domain
HTH_11	PF08279.12	gi|345006403|ref|YP_004809256.1|	-	9.5e-07	28.7	0.0	1.7e-06	27.8	0.0	1.3	1	0	0	1	1	1	1	HTH	domain
HTH_34	PF13601.6	gi|345006403|ref|YP_004809256.1|	-	9.9e-07	28.9	0.0	0.031	14.4	0.0	2.3	2	0	0	2	2	2	2	Winged	helix	DNA-binding	domain
HTH_5	PF01022.20	gi|345006403|ref|YP_004809256.1|	-	4.3e-06	26.5	0.0	0.00013	21.7	0.0	2.2	2	0	0	2	2	2	1	Bacterial	regulatory	protein,	arsR	family
MarR	PF01047.22	gi|345006403|ref|YP_004809256.1|	-	1.8e-05	24.6	0.0	0.00013	21.8	0.0	2.1	2	0	0	2	2	2	1	MarR	family
HTH_Crp_2	PF13545.6	gi|345006403|ref|YP_004809256.1|	-	2.9e-05	23.9	0.2	6.5e-05	22.8	0.1	1.7	2	0	0	2	2	1	1	Crp-like	helix-turn-helix	domain
RP-C	PF03428.13	gi|345006403|ref|YP_004809256.1|	-	0.00029	20.5	0.0	0.014	15.1	0.0	2.3	2	0	0	2	2	2	1	Replication	protein	C	N-terminal	domain
HTH_IclR	PF09339.10	gi|345006403|ref|YP_004809256.1|	-	0.002	17.9	0.8	0.025	14.3	0.4	2.6	2	1	0	2	2	2	1	IclR	helix-turn-helix	domain
TrmB	PF01978.19	gi|345006403|ref|YP_004809256.1|	-	0.0024	17.7	0.0	0.012	15.5	0.0	1.9	2	0	0	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_36	PF13730.6	gi|345006403|ref|YP_004809256.1|	-	0.0028	17.6	0.0	0.0056	16.6	0.0	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_AsnC-type	PF13404.6	gi|345006403|ref|YP_004809256.1|	-	0.0071	16.2	0.1	0.026	14.4	0.1	2.0	1	0	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
HTH_29	PF13551.6	gi|345006403|ref|YP_004809256.1|	-	0.0088	16.1	2.5	0.2	11.7	0.0	3.4	3	1	1	4	4	4	1	Winged	helix-turn	helix
Rrf2	PF02082.20	gi|345006403|ref|YP_004809256.1|	-	0.016	15.6	0.0	0.034	14.5	0.0	1.5	1	0	0	1	1	1	0	Transcriptional	regulator
GntR	PF00392.21	gi|345006403|ref|YP_004809256.1|	-	0.02	14.5	0.1	0.051	13.2	0.0	1.7	2	0	0	2	2	2	0	Bacterial	regulatory	proteins,	gntR	family
HTH_10	PF04967.12	gi|345006403|ref|YP_004809256.1|	-	0.046	13.5	0.1	0.24	11.2	0.0	2.1	2	0	0	2	2	2	0	HTH	DNA	binding	domain
Fe_dep_repress	PF01325.19	gi|345006403|ref|YP_004809256.1|	-	0.048	13.9	0.0	0.094	12.9	0.0	1.4	1	0	0	1	1	1	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_DeoR	PF08220.12	gi|345006403|ref|YP_004809256.1|	-	0.11	12.2	0.0	0.21	11.4	0.0	1.4	1	0	0	1	1	1	0	DeoR-like	helix-turn-helix	domain
HTH_23	PF13384.6	gi|345006403|ref|YP_004809256.1|	-	0.14	12.0	0.0	0.53	10.1	0.0	1.9	2	0	0	2	2	2	0	Homeodomain-like	domain
Lact-deh-memb	PF09330.11	gi|345006403|ref|YP_004809256.1|	-	0.16	11.3	0.1	0.22	10.8	0.1	1.2	1	0	0	1	1	1	0	D-lactate	dehydrogenase,	membrane	binding
DUF4148	PF13663.6	gi|345006403|ref|YP_004809256.1|	-	0.17	12.1	2.6	0.28	11.4	0.5	2.3	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4148)
NfeD	PF01957.18	gi|345006405|ref|YP_004809258.1|	-	4.8e-08	33.3	0.4	8.8e-08	32.4	0.0	1.7	2	0	0	2	2	2	1	NfeD-like	C-terminal,	partner-binding
YtpI	PF14007.6	gi|345006405|ref|YP_004809258.1|	-	0.32	11.2	1.8	0.5	10.5	1.8	1.3	1	0	0	1	1	1	0	YtpI-like	protein
Band_7	PF01145.25	gi|345006406|ref|YP_004809259.1|	-	4.5e-38	131.0	5.4	4.5e-38	131.0	5.4	1.7	2	0	0	2	2	2	1	SPFH	domain	/	Band	7	family
Band_7_1	PF13421.6	gi|345006406|ref|YP_004809259.1|	-	0.00034	20.4	0.3	0.00059	19.6	0.3	1.4	1	0	0	1	1	1	1	SPFH	domain-Band	7	family
SBP_bac_6	PF13343.6	gi|345006407|ref|YP_004809260.1|	-	1.8e-19	70.1	0.0	2.9e-19	69.5	0.0	1.3	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_8	PF13416.6	gi|345006407|ref|YP_004809260.1|	-	3.2e-16	60.0	0.3	4.3e-16	59.6	0.3	1.2	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_1	PF01547.25	gi|345006407|ref|YP_004809260.1|	-	2.1e-09	37.8	0.8	2.9e-09	37.3	0.8	1.2	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_11	PF13531.6	gi|345006407|ref|YP_004809260.1|	-	8.4e-07	29.0	0.0	1.6e-06	28.0	0.0	1.4	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
TAT_signal	PF10518.9	gi|345006407|ref|YP_004809260.1|	-	0.061	13.2	0.5	0.13	12.2	0.5	1.5	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
BPD_transp_1	PF00528.22	gi|345006408|ref|YP_004809261.1|	-	1.8e-31	109.3	30.8	4.4e-17	62.4	10.3	3.0	4	0	0	4	4	4	2	Binding-protein-dependent	transport	system	inner	membrane	component
TRAP-gamma	PF07074.12	gi|345006408|ref|YP_004809261.1|	-	0.16	11.5	0.2	0.39	10.3	0.2	1.6	1	0	0	1	1	1	0	Translocon-associated	protein,	gamma	subunit	(TRAP-gamma)
ABC_tran	PF00005.27	gi|345006409|ref|YP_004809262.1|	-	3.3e-36	124.8	0.0	1.1e-35	123.1	0.0	1.8	2	0	0	2	2	2	1	ABC	transporter
AAA_21	PF13304.6	gi|345006409|ref|YP_004809262.1|	-	1.6e-10	41.3	0.0	2.9e-05	24.0	0.0	2.2	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA	PF00004.29	gi|345006409|ref|YP_004809262.1|	-	3.8e-05	24.1	0.0	0.021	15.2	0.0	2.2	2	0	0	2	2	2	2	ATPase	family	associated	with	various	cellular	activities	(AAA)
SMC_N	PF02463.19	gi|345006409|ref|YP_004809262.1|	-	0.00032	20.2	0.0	0.036	13.5	0.0	2.1	2	0	0	2	2	2	1	RecF/RecN/SMC	N	terminal	domain
AAA_22	PF13401.6	gi|345006409|ref|YP_004809262.1|	-	0.0004	20.7	0.2	0.0019	18.5	0.2	1.9	1	1	0	1	1	1	1	AAA	domain
AAA_16	PF13191.6	gi|345006409|ref|YP_004809262.1|	-	0.00057	20.3	0.5	0.0021	18.5	0.5	1.9	1	1	0	1	1	1	1	AAA	ATPase	domain
TOBE_2	PF08402.10	gi|345006409|ref|YP_004809262.1|	-	0.003	17.7	0.1	0.003	17.7	0.1	3.3	3	1	1	4	4	4	1	TOBE	domain
AAA_30	PF13604.6	gi|345006409|ref|YP_004809262.1|	-	0.0078	16.0	0.3	0.027	14.2	0.2	1.9	1	1	0	1	1	1	1	AAA	domain
Rad17	PF03215.15	gi|345006409|ref|YP_004809262.1|	-	0.01	15.8	0.0	0.016	15.2	0.0	1.2	1	0	0	1	1	1	0	Rad17	P-loop	domain
AAA_25	PF13481.6	gi|345006409|ref|YP_004809262.1|	-	0.024	14.2	0.2	0.085	12.4	0.2	1.9	1	1	0	1	1	1	0	AAA	domain
TniB	PF05621.11	gi|345006409|ref|YP_004809262.1|	-	0.029	13.8	0.0	1.7	8.0	0.0	2.1	2	0	0	2	2	2	0	Bacterial	TniB	protein
sCache_3_2	PF17203.4	gi|345006409|ref|YP_004809262.1|	-	0.052	13.7	0.1	0.095	12.8	0.1	1.4	1	0	0	1	1	1	0	Single	cache	domain	3
MMR_HSR1	PF01926.23	gi|345006409|ref|YP_004809262.1|	-	0.061	13.4	0.0	0.18	11.9	0.0	1.8	1	1	0	1	1	1	0	50S	ribosome-binding	GTPase
SRP54	PF00448.22	gi|345006409|ref|YP_004809262.1|	-	0.068	12.8	0.1	1	8.9	0.0	2.2	2	0	0	2	2	2	0	SRP54-type	protein,	GTPase	domain
RsgA_GTPase	PF03193.16	gi|345006409|ref|YP_004809262.1|	-	0.1	12.5	0.1	0.28	11.1	0.0	1.6	2	0	0	2	2	2	0	RsgA	GTPase
AAA_23	PF13476.6	gi|345006409|ref|YP_004809262.1|	-	0.11	13.0	0.0	0.27	11.7	0.0	1.7	2	0	0	2	2	2	0	AAA	domain
AAA_33	PF13671.6	gi|345006409|ref|YP_004809262.1|	-	0.12	12.6	0.9	0.47	10.6	0.9	1.9	1	1	0	1	1	1	0	AAA	domain
AAA_24	PF13479.6	gi|345006409|ref|YP_004809262.1|	-	0.15	11.7	0.1	0.47	10.2	0.0	1.7	2	0	0	2	2	2	0	AAA	domain
AAA_28	PF13521.6	gi|345006409|ref|YP_004809262.1|	-	0.18	12.0	0.7	0.58	10.4	0.1	2.0	2	0	0	2	2	2	0	AAA	domain
SAM_adeno_trans	PF01887.16	gi|345006410|ref|YP_004809263.1|	-	2.9e-76	256.0	1.1	3.2e-76	255.8	1.1	1.0	1	0	0	1	1	1	1	S-adenosyl-l-methionine	hydroxide	adenosyltransferase
GYD	PF08734.11	gi|345006411|ref|YP_004809264.1|	-	1.2e-18	66.8	0.1	1.3e-18	66.7	0.1	1.0	1	0	0	1	1	1	1	GYD	domain
Peptidase_M20	PF01546.28	gi|345006412|ref|YP_004809265.1|	-	5e-08	32.9	2.7	5e-08	32.9	2.7	1.8	2	1	0	2	2	2	1	Peptidase	family	M20/M25/M40
M20_dimer	PF07687.14	gi|345006412|ref|YP_004809265.1|	-	7.2e-06	25.9	0.0	2.1e-05	24.4	0.0	1.8	1	0	0	1	1	1	1	Peptidase	dimerisation	domain
DEAD	PF00270.29	gi|345006414|ref|YP_004809267.1|	-	4.5e-23	81.9	0.0	8.1e-23	81.1	0.0	1.4	1	0	0	1	1	1	1	DEAD/DEAH	box	helicase
HHH_5	PF14520.6	gi|345006414|ref|YP_004809267.1|	-	9e-08	32.6	0.3	3.7e-07	30.6	0.3	2.1	1	0	0	1	1	1	1	Helix-hairpin-helix	domain
Helicase_C	PF00271.31	gi|345006414|ref|YP_004809267.1|	-	2.6e-06	27.7	0.0	3.2e-05	24.3	0.0	2.4	1	1	0	1	1	1	1	Helicase	conserved	C-terminal	domain
ResIII	PF04851.15	gi|345006414|ref|YP_004809267.1|	-	5.4e-06	26.5	0.0	8.8e-06	25.8	0.0	1.3	1	0	0	1	1	1	1	Type	III	restriction	enzyme,	res	subunit
DNA_pol_lambd_f	PF10391.9	gi|345006414|ref|YP_004809267.1|	-	0.00024	20.8	0.0	0.00078	19.2	0.0	1.9	1	0	0	1	1	1	1	Fingers	domain	of	DNA	polymerase	lambda
HHH	PF00633.23	gi|345006414|ref|YP_004809267.1|	-	0.011	15.5	0.0	1.2	9.1	0.0	3.8	3	0	0	3	3	3	0	Helix-hairpin-helix	motif
FCD	PF07729.12	gi|345006414|ref|YP_004809267.1|	-	0.072	13.5	2.5	0.17	12.3	1.5	2.2	2	0	0	2	2	2	0	FCD	domain
CGI-121	PF08617.10	gi|345006415|ref|YP_004809268.1|	-	3.1e-10	40.4	0.0	3.6e-10	40.2	0.0	1.0	1	0	0	1	1	1	1	Kinase	binding	protein	CGI-121
Glycos_transf_2	PF00535.26	gi|345006415|ref|YP_004809268.1|	-	0.021	14.7	0.1	2.2	8.0	0.0	2.2	1	1	1	2	2	2	0	Glycosyl	transferase	family	2
Pro_Al_protease	PF02983.14	gi|345006415|ref|YP_004809268.1|	-	7.5	6.7	10.3	5.6	7.1	0.5	3.6	3	1	1	4	4	4	0	Alpha-lytic	protease	prodomain
HNH	PF01844.23	gi|345006416|ref|YP_004809269.1|	-	0.083	13.1	19.0	2.5	8.4	2.1	3.9	3	1	0	3	3	3	0	HNH	endonuclease
DUF3795	PF12675.7	gi|345006416|ref|YP_004809269.1|	-	9.6	6.7	14.7	1.2e+02	3.1	0.8	3.4	2	2	1	3	3	3	0	Protein	of	unknown	function	(DUF3795)
IMP_cyclohyd	PF07826.11	gi|345006417|ref|YP_004809270.1|	-	7.7e-63	211.6	0.0	9e-63	211.3	0.0	1.0	1	0	0	1	1	1	1	IMP	cyclohydrolase-like	protein
Metallophos_2	PF12850.7	gi|345006418|ref|YP_004809271.1|	-	4.5e-32	111.5	0.0	5.6e-32	111.2	0.0	1.1	1	0	0	1	1	1	1	Calcineurin-like	phosphoesterase	superfamily	domain
Metallophos	PF00149.28	gi|345006418|ref|YP_004809271.1|	-	1.2e-09	39.0	0.3	2.2e-09	38.1	0.3	1.5	1	1	0	1	1	1	1	Calcineurin-like	phosphoesterase
Metallophos_3	PF14582.6	gi|345006418|ref|YP_004809271.1|	-	0.1	11.9	0.0	0.16	11.3	0.0	1.3	1	0	0	1	1	1	0	Metallophosphoesterase,	calcineurin	superfamily
Ribonuc_red_lgC	PF02867.15	gi|345006419|ref|YP_004809272.1|	-	1.3e-175	584.9	0.0	1.5e-175	584.7	0.0	1.0	1	0	0	1	1	1	1	Ribonucleotide	reductase,	barrel	domain
Ribonuc_red_lgN	PF00317.21	gi|345006419|ref|YP_004809272.1|	-	6.4e-22	77.4	0.1	2.2e-21	75.6	0.1	2.0	1	0	0	1	1	1	1	Ribonucleotide	reductase,	all-alpha	domain
DUF3929	PF13066.6	gi|345006419|ref|YP_004809272.1|	-	0.017	15.1	0.0	0.11	12.6	0.0	2.2	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3929)
Ribonuc_red_sm	PF00268.21	gi|345006420|ref|YP_004809273.1|	-	1.6e-78	264.0	0.0	1.9e-78	263.7	0.0	1.0	1	0	0	1	1	1	1	Ribonucleotide	reductase,	small	chain
GDPD_2	PF13653.6	gi|345006420|ref|YP_004809273.1|	-	0.12	12.9	1.2	2.5	8.7	0.0	3.3	4	0	0	4	4	4	0	Glycerophosphoryl	diester	phosphodiesterase	family
4HBT	PF03061.22	gi|345006421|ref|YP_004809274.1|	-	1.4e-13	51.0	0.4	2.3e-13	50.3	0.4	1.2	1	0	0	1	1	1	1	Thioesterase	superfamily
AA_kinase	PF00696.28	gi|345006422|ref|YP_004809275.1|	-	1.2e-47	162.5	1.3	1.8e-47	162.0	1.3	1.2	1	0	0	1	1	1	1	Amino	acid	kinase	family
ACT_7	PF13840.6	gi|345006422|ref|YP_004809275.1|	-	1.8e-13	50.0	0.0	1.3e-07	31.3	0.0	2.6	2	0	0	2	2	2	2	ACT	domain
ACT	PF01842.25	gi|345006422|ref|YP_004809275.1|	-	7.2e-10	38.5	0.1	8.2e-05	22.3	0.0	3.1	2	0	0	2	2	2	2	ACT	domain
ACT_4	PF13291.6	gi|345006422|ref|YP_004809275.1|	-	0.00036	21.1	0.1	0.062	13.9	0.0	2.7	2	0	0	2	2	2	1	ACT	domain
ACT_6	PF13740.6	gi|345006422|ref|YP_004809275.1|	-	0.022	14.7	0.3	9.5	6.3	0.1	2.6	2	0	0	2	2	2	0	ACT	domain
MFS_1	PF07690.16	gi|345006424|ref|YP_004809277.1|	-	5.2e-33	114.4	42.9	5.2e-33	114.4	42.9	1.3	1	1	0	1	1	1	1	Major	Facilitator	Superfamily
PTR2	PF00854.21	gi|345006424|ref|YP_004809277.1|	-	0.0033	16.3	1.8	0.0033	16.3	1.8	3.1	2	2	1	3	3	3	1	POT	family
MFS_1_like	PF12832.7	gi|345006424|ref|YP_004809277.1|	-	0.017	14.0	6.7	0.034	13.0	6.7	1.5	1	0	0	1	1	1	0	MFS_1	like	family
TrkH	PF02386.16	gi|345006425|ref|YP_004809278.1|	-	1.2e-60	205.4	10.0	4.4e-60	203.6	10.0	1.7	1	1	0	1	1	1	1	Cation	transport	protein
Citrate_synt	PF00285.21	gi|345006426|ref|YP_004809279.1|	-	8.3e-126	419.9	0.0	9.4e-126	419.7	0.0	1.0	1	0	0	1	1	1	1	Citrate	synthase,	C-terminal	domain
TrkA_C	PF02080.21	gi|345006427|ref|YP_004809280.1|	-	2.7e-27	94.4	0.2	7.4e-14	51.3	0.1	2.5	2	0	0	2	2	2	2	TrkA-C	domain
PhoU	PF01895.19	gi|345006427|ref|YP_004809280.1|	-	1.3e-18	67.2	3.4	9.3e-10	38.8	0.9	2.4	2	0	0	2	2	2	2	PhoU	domain
CLZ	PF16526.5	gi|345006427|ref|YP_004809280.1|	-	0.15	12.4	0.9	18	5.8	0.3	2.6	2	0	0	2	2	2	0	C-terminal	leucine	zipper	domain	of	cyclic	nucleotide-gated	channels
Wzy_C	PF04932.15	gi|345006428|ref|YP_004809281.1|	-	0.039	13.6	3.1	0.046	13.3	3.1	1.1	1	0	0	1	1	1	0	O-Antigen	ligase
DUF99	PF01949.16	gi|345006429|ref|YP_004809282.1|	-	2.2e-48	164.1	0.4	1.1e-40	139.0	0.0	2.0	2	0	0	2	2	2	2	Protein	of	unknown	function	DUF99
LUD_dom	PF02589.15	gi|345006431|ref|YP_004809284.1|	-	7.3e-12	45.4	0.1	7.6e-12	45.3	0.1	1.1	1	0	0	1	1	1	1	LUD	domain
LUD_dom	PF02589.15	gi|345006432|ref|YP_004809285.1|	-	2.9e-41	141.3	0.8	5.1e-41	140.5	0.1	1.8	2	0	0	2	2	2	1	LUD	domain
Fer4_8	PF13183.6	gi|345006432|ref|YP_004809285.1|	-	4.5e-09	36.6	2.3	1.1e-08	35.4	2.3	1.7	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_10	PF13237.6	gi|345006432|ref|YP_004809285.1|	-	3.8e-08	33.3	3.6	0.00055	20.0	0.2	2.5	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_9	PF13187.6	gi|345006432|ref|YP_004809285.1|	-	1.2e-07	31.8	1.2	3.4e-07	30.3	1.2	1.8	1	1	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_17	PF13534.6	gi|345006432|ref|YP_004809285.1|	-	2e-06	28.2	0.9	4.7e-06	27.0	0.9	1.7	1	1	0	1	1	1	1	4Fe-4S	dicluster	domain
CCG	PF02754.16	gi|345006432|ref|YP_004809285.1|	-	9.8e-06	25.7	0.2	3.2e-05	24.1	0.2	2.0	1	0	0	1	1	1	1	Cysteine-rich	domain
Fer4_7	PF12838.7	gi|345006432|ref|YP_004809285.1|	-	4.8e-05	23.9	8.1	0.00042	20.9	8.3	2.3	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4	PF00037.27	gi|345006432|ref|YP_004809285.1|	-	7.6e-05	22.4	15.8	0.0011	18.7	4.2	2.4	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_21	PF14697.6	gi|345006432|ref|YP_004809285.1|	-	0.00028	21.0	8.0	0.01	16.0	1.3	2.5	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_2	PF12797.7	gi|345006432|ref|YP_004809285.1|	-	0.00057	19.8	14.7	0.012	15.7	3.7	2.6	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_18	PF13746.6	gi|345006432|ref|YP_004809285.1|	-	0.0013	19.0	2.5	0.05	13.8	0.3	2.4	2	0	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_16	PF13484.6	gi|345006432|ref|YP_004809285.1|	-	0.0013	19.6	4.3	0.051	14.5	0.2	2.6	2	0	0	2	2	2	1	4Fe-4S	double	cluster	binding	domain
Fer4_6	PF12837.7	gi|345006432|ref|YP_004809285.1|	-	0.0022	18.0	14.1	0.0054	16.8	4.0	2.6	2	0	0	2	2	2	1	4Fe-4S	binding	domain
Fer4_4	PF12800.7	gi|345006432|ref|YP_004809285.1|	-	0.0037	17.7	14.0	0.047	14.2	3.6	2.6	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_3	PF12798.7	gi|345006432|ref|YP_004809285.1|	-	0.015	16.2	5.2	0.015	16.2	5.2	2.5	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_22	PF17179.4	gi|345006432|ref|YP_004809285.1|	-	0.028	15.2	7.8	0.13	13.1	1.1	2.5	2	0	0	2	2	2	0	4Fe-4S	dicluster	domain
Fer4_20	PF14691.6	gi|345006432|ref|YP_004809285.1|	-	0.071	12.9	3.4	0.078	12.7	0.2	2.4	2	0	0	2	2	2	0	Dihydroprymidine	dehydrogenase	domain	II,	4Fe-4S	cluster
Fer4_15	PF13459.6	gi|345006432|ref|YP_004809285.1|	-	1.4	9.7	7.0	0.56	11.0	0.2	3.5	3	0	0	3	3	3	0	4Fe-4S	single	cluster	domain
Lactamase_B	PF00753.27	gi|345006433|ref|YP_004809286.1|	-	5.3e-13	49.4	8.6	1.1e-11	45.1	8.6	2.1	1	1	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Lactamase_B_2	PF12706.7	gi|345006433|ref|YP_004809286.1|	-	6.3e-06	25.8	3.8	0.00015	21.4	3.8	2.2	1	1	0	1	1	1	1	Beta-lactamase	superfamily	domain
Lactamase_B_3	PF13483.6	gi|345006433|ref|YP_004809286.1|	-	0.0059	16.5	0.1	0.009	15.9	0.1	1.4	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
Lactamase_B_6	PF16661.5	gi|345006433|ref|YP_004809286.1|	-	0.012	15.1	0.0	0.022	14.2	0.0	1.4	1	0	0	1	1	1	0	Metallo-beta-lactamase	superfamily	domain
Imm70	PF15601.6	gi|345006433|ref|YP_004809286.1|	-	0.031	13.8	0.0	0.05	13.1	0.0	1.3	1	0	0	1	1	1	0	Immunity	protein	70
S4_2	PF13275.6	gi|345006433|ref|YP_004809286.1|	-	0.098	12.5	0.0	1.1	9.1	0.0	2.4	2	0	0	2	2	2	0	S4	domain
UL11	PF11094.8	gi|345006433|ref|YP_004809286.1|	-	0.23	11.4	5.1	3	7.8	0.6	3.4	3	0	0	3	3	3	0	Membrane-associated	tegument	protein
Ribosomal_L40e	PF01020.17	gi|345006434|ref|YP_004809287.1|	-	2e-07	30.8	4.9	2.4e-07	30.5	4.9	1.2	1	0	0	1	1	1	1	Ribosomal	L40e	family
DZR	PF12773.7	gi|345006434|ref|YP_004809287.1|	-	0.0013	18.7	0.9	0.0013	18.7	0.9	1.2	1	0	0	1	1	1	1	Double	zinc	ribbon
zinc_ribbon_2	PF13240.6	gi|345006434|ref|YP_004809287.1|	-	0.0016	18.1	3.4	0.0023	17.6	3.4	1.3	1	0	0	1	1	1	1	zinc-ribbon	domain
DHHC	PF01529.20	gi|345006434|ref|YP_004809287.1|	-	0.1	12.7	1.0	0.11	12.6	1.0	1.1	1	0	0	1	1	1	0	DHHC	palmitoyltransferase
Thioredoxin	PF00085.20	gi|345006435|ref|YP_004809288.1|	-	9.2e-21	73.8	0.0	1e-20	73.6	0.0	1.0	1	0	0	1	1	1	1	Thioredoxin
Thioredoxin_2	PF13098.6	gi|345006435|ref|YP_004809288.1|	-	2e-06	28.2	0.3	8e-06	26.3	0.3	1.7	1	1	0	1	1	1	1	Thioredoxin-like	domain
Thioredoxin_8	PF13905.6	gi|345006435|ref|YP_004809288.1|	-	1.7e-05	25.0	0.1	0.0014	18.9	0.0	2.1	1	1	1	2	2	2	2	Thioredoxin-like
Glutaredoxin	PF00462.24	gi|345006435|ref|YP_004809288.1|	-	2.9e-05	24.2	0.1	6.8e-05	23.0	0.0	1.6	1	1	1	2	2	2	1	Glutaredoxin
Thioredoxin_9	PF14595.6	gi|345006435|ref|YP_004809288.1|	-	3e-05	23.8	0.0	3.6e-05	23.6	0.0	1.1	1	0	0	1	1	1	1	Thioredoxin
Redoxin	PF08534.10	gi|345006435|ref|YP_004809288.1|	-	0.00042	20.0	0.2	0.044	13.5	0.0	2.0	1	1	1	2	2	2	1	Redoxin
Thioredoxin_3	PF13192.6	gi|345006435|ref|YP_004809288.1|	-	0.00057	19.9	0.0	0.00068	19.6	0.0	1.1	1	0	0	1	1	1	1	Thioredoxin	domain
DUF836	PF05768.14	gi|345006435|ref|YP_004809288.1|	-	0.0008	19.8	0.0	0.00094	19.6	0.0	1.1	1	0	0	1	1	1	1	Glutaredoxin-like	domain	(DUF836)
DSBA	PF01323.20	gi|345006435|ref|YP_004809288.1|	-	0.0011	18.8	0.1	0.025	14.4	0.0	1.9	1	1	1	2	2	2	1	DSBA-like	thioredoxin	domain
Thioredoxin_5	PF13743.6	gi|345006435|ref|YP_004809288.1|	-	0.0018	18.0	0.0	0.0018	18.0	0.0	1.2	1	0	0	1	1	1	1	Thioredoxin
AhpC-TSA	PF00578.21	gi|345006435|ref|YP_004809288.1|	-	0.0026	17.7	0.1	0.0071	16.3	0.1	1.6	1	1	0	1	1	1	1	AhpC/TSA	family
TraF	PF13728.6	gi|345006435|ref|YP_004809288.1|	-	0.0066	16.3	0.0	0.0082	16.0	0.0	1.2	1	0	0	1	1	1	1	F	plasmid	transfer	operon	protein
HyaE	PF07449.11	gi|345006435|ref|YP_004809288.1|	-	0.047	13.6	0.0	0.057	13.4	0.0	1.2	1	0	0	1	1	1	0	Hydrogenase-1	expression	protein	HyaE
Sec61_beta	PF03911.16	gi|345006436|ref|YP_004809289.1|	-	2.5e-18	65.8	0.2	3e-18	65.6	0.2	1.1	1	0	0	1	1	1	1	Sec61beta	family
FXa_inhibition	PF14670.6	gi|345006437|ref|YP_004809290.1|	-	0.5	10.7	7.2	2.8	8.3	7.2	2.3	1	1	0	1	1	1	0	Coagulation	Factor	Xa	inhibitory	site
SNO	PF01174.19	gi|345006438|ref|YP_004809291.1|	-	1.1e-54	185.2	0.0	1.3e-54	184.9	0.0	1.0	1	0	0	1	1	1	1	SNO	glutamine	amidotransferase	family
GATase_3	PF07685.14	gi|345006438|ref|YP_004809291.1|	-	5.6e-10	39.1	0.0	1.1e-09	38.2	0.0	1.4	2	0	0	2	2	2	1	CobB/CobQ-like	glutamine	amidotransferase	domain
Peptidase_S51	PF03575.17	gi|345006438|ref|YP_004809291.1|	-	8.3e-05	22.3	0.0	0.00011	22.0	0.0	1.2	1	0	0	1	1	1	1	Peptidase	family	S51
DJ-1_PfpI	PF01965.24	gi|345006438|ref|YP_004809291.1|	-	0.00065	19.5	0.0	0.0011	18.8	0.0	1.4	1	0	0	1	1	1	1	DJ-1/PfpI	family
BPL_N	PF09825.9	gi|345006438|ref|YP_004809291.1|	-	0.0038	16.4	0.0	0.045	12.8	0.0	2.0	2	0	0	2	2	2	1	Biotin-protein	ligase,	N	terminal
GATase	PF00117.28	gi|345006438|ref|YP_004809291.1|	-	0.075	12.8	0.0	0.26	11.0	0.0	1.8	1	1	0	1	1	1	0	Glutamine	amidotransferase	class-I
ThiJ_like	PF17124.5	gi|345006438|ref|YP_004809291.1|	-	0.14	11.8	0.0	0.19	11.4	0.0	1.1	1	0	0	1	1	1	0	ThiJ/PfpI	family-like
PRA-PH	PF01503.17	gi|345006439|ref|YP_004809292.1|	-	1.1e-17	64.3	2.4	1.2e-17	64.1	2.4	1.0	1	0	0	1	1	1	1	Phosphoribosyl-ATP	pyrophosphohydrolase
MazG	PF03819.17	gi|345006439|ref|YP_004809292.1|	-	0.001	19.2	3.4	0.0018	18.4	3.4	1.4	1	0	0	1	1	1	1	MazG	nucleotide	pyrophosphohydrolase	domain
DUF1205	PF06722.12	gi|345006439|ref|YP_004809292.1|	-	0.093	12.8	0.0	0.13	12.4	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1205)
UBA_6	PF18039.1	gi|345006439|ref|YP_004809292.1|	-	0.15	12.0	2.9	13	5.9	0.0	3.1	3	0	0	3	3	3	0	UBA-like	domain
F420_oxidored	PF03807.17	gi|345006440|ref|YP_004809293.1|	-	1.1e-19	70.8	0.1	2e-19	70.0	0.1	1.4	1	0	0	1	1	1	1	NADP	oxidoreductase	coenzyme	F420-dependent
Sacchrp_dh_NADP	PF03435.18	gi|345006440|ref|YP_004809293.1|	-	9.9e-06	25.8	0.3	2.3e-05	24.7	0.1	1.6	2	0	0	2	2	2	1	Saccharopine	dehydrogenase	NADP	binding	domain
NAD_binding_2	PF03446.15	gi|345006440|ref|YP_004809293.1|	-	5.8e-05	23.3	0.0	0.00013	22.2	0.0	1.5	1	0	0	1	1	1	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
ApbA	PF02558.16	gi|345006440|ref|YP_004809293.1|	-	0.0001	22.0	0.0	0.00014	21.6	0.0	1.2	1	0	0	1	1	1	1	Ketopantoate	reductase	PanE/ApbA
Semialdhyde_dh	PF01118.24	gi|345006440|ref|YP_004809293.1|	-	0.00042	20.7	0.2	0.00082	19.8	0.1	1.6	1	1	1	2	2	2	1	Semialdehyde	dehydrogenase,	NAD	binding	domain
NAD_Gly3P_dh_N	PF01210.23	gi|345006440|ref|YP_004809293.1|	-	0.0014	18.6	0.0	0.0023	17.9	0.0	1.3	1	0	0	1	1	1	1	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
PDH	PF02153.17	gi|345006440|ref|YP_004809293.1|	-	0.0022	17.1	0.1	0.0043	16.1	0.1	1.4	2	0	0	2	2	2	1	Prephenate	dehydrogenase
IlvN	PF07991.12	gi|345006440|ref|YP_004809293.1|	-	0.0066	16.0	0.2	0.1	12.2	0.2	2.3	2	1	0	2	2	2	1	Acetohydroxy	acid	isomeroreductase,	NADPH-binding	domain
KR	PF08659.10	gi|345006440|ref|YP_004809293.1|	-	0.0074	16.2	0.0	0.012	15.5	0.0	1.3	1	0	0	1	1	1	1	KR	domain
Rossmann-like	PF10727.9	gi|345006440|ref|YP_004809293.1|	-	0.032	14.1	0.9	0.058	13.2	0.1	1.9	2	1	0	2	2	2	0	Rossmann-like	domain
Ldh_1_N	PF00056.23	gi|345006440|ref|YP_004809293.1|	-	0.073	13.2	0.1	0.13	12.3	0.1	1.4	1	0	0	1	1	1	0	lactate/malate	dehydrogenase,	NAD	binding	domain
Hydrolase	PF00702.26	gi|345006441|ref|YP_004809294.1|	-	1.3e-09	38.6	5.1	8.1e-09	36.1	5.1	2.1	1	1	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
HAD_2	PF13419.6	gi|345006441|ref|YP_004809294.1|	-	3.3e-09	37.1	0.0	6.3e-07	29.7	0.0	2.2	2	0	0	2	2	2	2	Haloacid	dehalogenase-like	hydrolase
Hydrolase_like	PF13242.6	gi|345006441|ref|YP_004809294.1|	-	0.0001	22.3	2.1	0.00034	20.6	2.1	2.0	1	1	0	1	1	1	1	HAD-hyrolase-like
Flagellin_IN	PF07196.13	gi|345006441|ref|YP_004809294.1|	-	0.3	11.3	3.4	0.32	11.2	0.2	2.3	2	0	0	2	2	2	0	Flagellin	hook	IN	motif
UPF0146	PF03686.13	gi|345006442|ref|YP_004809295.1|	-	1.7e-23	82.9	0.0	2.2e-23	82.5	0.0	1.1	1	0	0	1	1	1	1	Uncharacterised	protein	family	(UPF0146)
Peptidase_M54	PF07998.11	gi|345006443|ref|YP_004809296.1|	-	3.7e-22	79.3	0.0	4.6e-22	79.0	0.0	1.1	1	0	0	1	1	1	1	Peptidase	family	M54
Reprolysin_2	PF13574.6	gi|345006443|ref|YP_004809296.1|	-	9.1e-07	29.0	0.0	1e-06	28.8	0.0	1.1	1	0	0	1	1	1	1	Metallo-peptidase	family	M12B	Reprolysin-like
Reprolysin_4	PF13583.6	gi|345006443|ref|YP_004809296.1|	-	1.1e-05	25.2	0.0	1.3e-05	24.9	0.0	1.1	1	0	0	1	1	1	1	Metallo-peptidase	family	M12B	Reprolysin-like
Reprolysin_5	PF13688.6	gi|345006443|ref|YP_004809296.1|	-	2.5e-05	24.5	0.0	2.7e-05	24.4	0.0	1.1	1	0	0	1	1	1	1	Metallo-peptidase	family	M12
Reprolysin_3	PF13582.6	gi|345006443|ref|YP_004809296.1|	-	2.5e-05	24.8	0.0	3.2e-05	24.5	0.0	1.2	1	0	0	1	1	1	1	Metallo-peptidase	family	M12B	Reprolysin-like
Peptidase_M10	PF00413.24	gi|345006443|ref|YP_004809296.1|	-	0.00086	19.2	0.0	0.00093	19.1	0.0	1.2	1	0	0	1	1	1	1	Matrixin
Peptidase_M66	PF10462.9	gi|345006443|ref|YP_004809296.1|	-	0.003	16.6	0.0	0.0037	16.2	0.0	1.2	1	0	0	1	1	1	1	Peptidase	M66
DUF4953	PF16313.5	gi|345006443|ref|YP_004809296.1|	-	0.0045	16.2	0.0	0.0072	15.6	0.0	1.3	1	0	0	1	1	1	1	Met-zincin
Reprolysin	PF01421.19	gi|345006443|ref|YP_004809296.1|	-	0.018	14.9	0.0	0.023	14.6	0.0	1.1	1	0	0	1	1	1	0	Reprolysin	(M12B)	family	zinc	metalloprotease
Zincin_1	PF06262.11	gi|345006443|ref|YP_004809296.1|	-	0.025	14.7	0.0	0.048	13.8	0.0	1.4	1	0	0	1	1	1	0	Zincin-like	metallopeptidase
Metallopep	PF12044.8	gi|345006443|ref|YP_004809296.1|	-	0.025	13.2	0.2	0.035	12.7	0.2	1.2	1	0	0	1	1	1	0	Putative	peptidase	family
Caveolin	PF01146.17	gi|345006444|ref|YP_004809297.1|	-	0.64	10.0	7.5	1.1	9.3	1.6	2.1	2	0	0	2	2	2	0	Caveolin
Ala_racemase_N	PF01168.20	gi|345006445|ref|YP_004809298.1|	-	1.1e-27	97.1	1.2	1.6e-27	96.6	1.2	1.1	1	0	0	1	1	1	1	Alanine	racemase,	N-terminal	domain
D-ser_dehydrat	PF14031.6	gi|345006445|ref|YP_004809298.1|	-	8.3e-21	74.5	0.0	2.4e-20	73.0	0.0	1.8	1	0	0	1	1	1	1	Putative	serine	dehydratase	domain
Orn_Arg_deC_N	PF02784.16	gi|345006445|ref|YP_004809298.1|	-	0.0017	17.8	0.3	0.0025	17.2	0.3	1.3	1	0	0	1	1	1	1	Pyridoxal-dependent	decarboxylase,	pyridoxal	binding	domain
Lactonase	PF10282.9	gi|345006446|ref|YP_004809299.1|	-	3.9e-11	42.8	0.1	2.5e-05	23.7	0.1	4.0	1	1	1	2	2	2	2	Lactonase,	7-bladed	beta-propeller
NHL	PF01436.21	gi|345006446|ref|YP_004809299.1|	-	1.8e-09	37.2	1.5	0.0099	15.9	0.0	5.3	5	0	0	5	5	5	2	NHL	repeat
SGL	PF08450.12	gi|345006446|ref|YP_004809299.1|	-	2.2e-07	30.7	0.2	0.015	14.9	0.0	2.7	3	0	0	3	3	3	2	SMP-30/Gluconolactonase/LRE-like	region
Cytochrom_D1	PF02239.16	gi|345006446|ref|YP_004809299.1|	-	2.2e-06	26.5	0.0	0.0074	14.9	0.0	3.5	1	1	1	2	2	2	2	Cytochrome	D1	heme	domain
SSF	PF00474.17	gi|345006448|ref|YP_004809301.1|	-	7.6e-17	61.3	32.3	1e-16	60.8	32.3	1.2	1	0	0	1	1	1	1	Sodium:solute	symporter	family
Cyclase	PF04199.13	gi|345006449|ref|YP_004809302.1|	-	1.2e-21	77.4	0.0	1.5e-21	77.0	0.0	1.1	1	0	0	1	1	1	1	Putative	cyclase
Arginase	PF00491.21	gi|345006450|ref|YP_004809303.1|	-	6.1e-76	255.6	2.3	8e-76	255.2	2.3	1.1	1	0	0	1	1	1	1	Arginase	family
DUF1445	PF07286.12	gi|345006450|ref|YP_004809303.1|	-	0.048	13.6	0.0	0.089	12.7	0.0	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1445)
F420_ligase	PF01996.16	gi|345006450|ref|YP_004809303.1|	-	0.12	11.7	0.0	0.19	11.1	0.0	1.2	1	0	0	1	1	1	0	F420-0:Gamma-glutamyl	ligase
Aminotran_3	PF00202.21	gi|345006451|ref|YP_004809304.1|	-	7.8e-116	387.1	0.0	9.4e-116	386.8	0.0	1.0	1	0	0	1	1	1	1	Aminotransferase	class-III
NRD1_2	PF01995.16	gi|345006452|ref|YP_004809305.1|	-	1.1e-19	70.7	0.0	1.6e-19	70.1	0.0	1.2	1	0	0	1	1	1	1	NrpR	regulatory	domains	NRD1	and	2
HTH_12	PF08461.10	gi|345006452|ref|YP_004809305.1|	-	2.1e-11	43.6	0.2	6.9e-11	41.9	0.2	1.9	2	0	0	2	2	2	1	Ribonuclease	R	winged-helix	domain
HTH_Tnp_Tc3_2	PF01498.18	gi|345006452|ref|YP_004809305.1|	-	0.0049	17.1	0.0	0.03	14.5	0.0	2.1	2	0	0	2	2	2	1	Transposase
Ribosomal_S19e	PF01090.19	gi|345006452|ref|YP_004809305.1|	-	0.01	15.5	0.0	0.032	13.9	0.1	1.7	2	0	0	2	2	2	0	Ribosomal	protein	S19e
AhpC-TSA	PF00578.21	gi|345006453|ref|YP_004809306.1|	-	2.2e-21	76.0	0.0	2.9e-21	75.6	0.0	1.1	1	0	0	1	1	1	1	AhpC/TSA	family
Redoxin	PF08534.10	gi|345006453|ref|YP_004809306.1|	-	6.9e-12	45.3	0.0	8.9e-12	44.9	0.0	1.1	1	0	0	1	1	1	1	Redoxin
AhpC-TSA_2	PF13911.6	gi|345006453|ref|YP_004809306.1|	-	2.4e-05	24.4	0.0	5e-05	23.4	0.0	1.4	1	1	0	1	1	1	1	AhpC/TSA	antioxidant	enzyme
Thioredoxin_8	PF13905.6	gi|345006453|ref|YP_004809306.1|	-	0.17	12.2	0.0	0.38	11.1	0.0	1.7	1	1	0	1	1	1	0	Thioredoxin-like
UbiA	PF01040.18	gi|345006454|ref|YP_004809307.1|	-	3.8e-16	59.1	29.4	3.8e-16	59.1	29.4	2.5	1	1	1	2	2	2	1	UbiA	prenyltransferase	family
DUF547	PF04784.14	gi|345006455|ref|YP_004809308.1|	-	6e-26	90.9	0.0	7.8e-26	90.5	0.0	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function,	DUF547
Oxidored_FMN	PF00724.20	gi|345006456|ref|YP_004809309.1|	-	2.7e-68	230.7	0.0	3.4e-68	230.4	0.0	1.0	1	0	0	1	1	1	1	NADH:flavin	oxidoreductase	/	NADH	oxidase	family
His_biosynth	PF00977.21	gi|345006456|ref|YP_004809309.1|	-	0.0011	18.5	0.0	0.0018	17.8	0.0	1.3	1	0	0	1	1	1	1	Histidine	biosynthesis	protein
HMGL-like	PF00682.19	gi|345006456|ref|YP_004809309.1|	-	0.16	11.5	0.8	1.1	8.8	0.0	2.5	3	0	0	3	3	3	0	HMGL-like
MR_MLE_C	PF13378.6	gi|345006457|ref|YP_004809310.1|	-	7.6e-41	140.1	4.5	1.2e-40	139.5	4.5	1.2	1	0	0	1	1	1	1	Enolase	C-terminal	domain-like
MR_MLE_N	PF02746.16	gi|345006457|ref|YP_004809310.1|	-	1e-13	51.5	0.0	2e-13	50.6	0.0	1.5	1	0	0	1	1	1	1	Mandelate	racemase	/	muconate	lactonizing	enzyme,	N-terminal	domain
MAAL_C	PF07476.11	gi|345006457|ref|YP_004809310.1|	-	0.0047	16.1	0.4	0.0082	15.3	0.4	1.4	1	0	0	1	1	1	1	Methylaspartate	ammonia-lyase	C-terminus
Amidohydro_3	PF07969.11	gi|345006458|ref|YP_004809311.1|	-	1.2e-35	123.9	7.5	1.5e-35	123.6	7.5	1.1	1	0	0	1	1	1	1	Amidohydrolase	family
Amidohydro_1	PF01979.20	gi|345006458|ref|YP_004809311.1|	-	3.3e-10	39.8	0.6	0.001	18.5	0.9	2.9	2	1	0	2	2	2	2	Amidohydrolase	family
Urease_alpha	PF00449.20	gi|345006458|ref|YP_004809311.1|	-	0.022	15.1	0.1	0.057	13.7	0.1	1.7	1	0	0	1	1	1	0	Urease	alpha-subunit,	N-terminal	domain
Phage_holin_2_2	PF10746.9	gi|345006459|ref|YP_004809312.1|	-	0.17	11.6	1.0	6.6	6.5	0.0	2.2	2	0	0	2	2	2	0	Phage	holin	T7	family,	holin	superfamily	II
RE_HaeIII	PF09556.10	gi|345006460|ref|YP_004809313.1|	-	0.18	10.9	0.0	0.25	10.4	0.0	1.2	1	0	0	1	1	1	0	HaeIII	restriction	endonuclease
DZR	PF12773.7	gi|345006461|ref|YP_004809314.1|	-	0.02	14.9	4.2	0.026	14.6	1.8	2.1	2	0	0	2	2	2	0	Double	zinc	ribbon
zinc_ribbon_2	PF13240.6	gi|345006461|ref|YP_004809314.1|	-	0.12	12.1	1.9	8.7	6.2	0.1	2.4	2	0	0	2	2	2	0	zinc-ribbon	domain
ADK_lid	PF05191.14	gi|345006461|ref|YP_004809314.1|	-	0.15	12.0	4.2	1.1	9.3	4.2	2.2	1	1	0	1	1	1	0	Adenylate	kinase,	active	site	lid
UPF0547	PF10571.9	gi|345006461|ref|YP_004809314.1|	-	0.33	11.1	4.3	4.3	7.5	0.4	2.5	2	0	0	2	2	2	0	Uncharacterised	protein	family	UPF0547
DNA_RNApol_7kD	PF03604.13	gi|345006461|ref|YP_004809314.1|	-	0.59	9.9	3.0	13	5.5	0.9	2.6	2	0	0	2	2	2	0	DNA	directed	RNA	polymerase,	7	kDa	subunit
Zn-ribbon_8	PF09723.10	gi|345006461|ref|YP_004809314.1|	-	1.8	8.7	4.2	2.9	8.1	1.1	2.3	2	0	0	2	2	2	0	Zinc	ribbon	domain
zf-ribbon_3	PF13248.6	gi|345006461|ref|YP_004809314.1|	-	3.9	7.0	10.3	1.7	8.1	0.1	2.9	3	1	0	3	3	3	0	zinc-ribbon	domain
Helicase_IV_N	PF12462.8	gi|345006462|ref|YP_004809315.1|	-	0.001	19.1	0.4	0.0012	18.8	0.4	1.2	1	0	0	1	1	1	1	DNA	helicase	IV	/	RNA	helicase	N	terminal
EzrA	PF06160.12	gi|345006462|ref|YP_004809315.1|	-	0.0033	15.7	1.7	0.0042	15.3	1.7	1.1	1	0	0	1	1	1	1	Septation	ring	formation	regulator,	EzrA
TMF_DNA_bd	PF12329.8	gi|345006462|ref|YP_004809315.1|	-	0.0067	16.4	2.8	0.061	13.3	0.4	2.6	3	0	0	3	3	3	1	TATA	element	modulatory	factor	1	DNA	binding
DUF4515	PF14988.6	gi|345006462|ref|YP_004809315.1|	-	0.0088	15.9	2.4	0.011	15.6	2.4	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4515)
UPF0242	PF06785.11	gi|345006462|ref|YP_004809315.1|	-	0.022	14.9	2.3	0.026	14.6	2.3	1.2	1	0	0	1	1	1	0	Uncharacterised	protein	family	(UPF0242)	N-terminus
YceD	PF02620.17	gi|345006462|ref|YP_004809315.1|	-	0.091	12.9	4.6	0.042	14.0	2.4	1.6	1	1	1	2	2	2	0	Large	ribosomal	RNA	subunit	accumulation	protein	YceD
ATG16	PF08614.11	gi|345006462|ref|YP_004809315.1|	-	0.29	11.3	10.4	0.64	10.2	10.5	1.5	1	1	0	1	1	1	0	Autophagy	protein	16	(ATG16)
DUF4407	PF14362.6	gi|345006462|ref|YP_004809315.1|	-	0.46	9.8	5.4	0.68	9.2	5.4	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4407)
SBP_bac_5	PF00496.22	gi|345006463|ref|YP_004809316.1|	-	1.5e-53	182.2	4.3	2.1e-47	161.9	2.7	2.1	2	0	0	2	2	2	2	Bacterial	extracellular	solute-binding	proteins,	family	5	Middle
BPD_transp_1	PF00528.22	gi|345006464|ref|YP_004809317.1|	-	1.9e-40	138.6	8.4	1.9e-40	138.6	8.4	2.3	1	1	1	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
BPD_transp_1	PF00528.22	gi|345006465|ref|YP_004809318.1|	-	7.1e-26	91.1	19.3	2.3e-25	89.4	14.2	2.4	2	0	0	2	2	2	2	Binding-protein-dependent	transport	system	inner	membrane	component
OppC_N	PF12911.7	gi|345006465|ref|YP_004809318.1|	-	5.7e-12	45.4	0.7	5.7e-12	45.4	0.7	3.6	3	1	1	4	4	4	1	N-terminal	TM	domain	of	oligopeptide	transport	permease	C
ABC_tran	PF00005.27	gi|345006466|ref|YP_004809319.1|	-	1.1e-23	84.2	0.0	1.7e-23	83.7	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
oligo_HPY	PF08352.12	gi|345006466|ref|YP_004809319.1|	-	5e-17	62.2	0.0	1e-16	61.1	0.0	1.6	1	0	0	1	1	1	1	Oligopeptide/dipeptide	transporter,	C-terminal	region
AAA_21	PF13304.6	gi|345006466|ref|YP_004809319.1|	-	8.7e-08	32.3	1.1	0.00017	21.5	0.2	2.2	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|345006466|ref|YP_004809319.1|	-	3.2e-05	23.5	0.5	0.0003	20.3	0.5	2.0	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_22	PF13401.6	gi|345006466|ref|YP_004809319.1|	-	3.5e-05	24.1	0.4	0.0014	18.9	0.4	2.2	1	1	0	1	1	1	1	AAA	domain
AAA_29	PF13555.6	gi|345006466|ref|YP_004809319.1|	-	0.0015	18.2	0.0	0.0027	17.4	0.0	1.3	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
tRNA_lig_kinase	PF08303.11	gi|345006466|ref|YP_004809319.1|	-	0.003	17.7	0.0	0.0066	16.6	0.0	1.5	1	0	0	1	1	1	1	tRNA	ligase	kinase	domain
AAA_16	PF13191.6	gi|345006466|ref|YP_004809319.1|	-	0.0051	17.2	0.1	0.012	16.0	0.1	1.5	1	1	0	1	1	1	1	AAA	ATPase	domain
RsgA_GTPase	PF03193.16	gi|345006466|ref|YP_004809319.1|	-	0.0064	16.4	0.0	0.014	15.3	0.0	1.5	1	0	0	1	1	1	1	RsgA	GTPase
TniB	PF05621.11	gi|345006466|ref|YP_004809319.1|	-	0.015	14.7	0.8	0.39	10.1	0.2	2.5	2	1	1	3	3	3	0	Bacterial	TniB	protein
AAA_23	PF13476.6	gi|345006466|ref|YP_004809319.1|	-	0.019	15.5	0.1	0.029	14.9	0.1	1.6	1	1	0	1	1	1	0	AAA	domain
AAA	PF00004.29	gi|345006466|ref|YP_004809319.1|	-	0.024	15.1	0.0	0.28	11.6	0.0	2.1	2	0	0	2	2	2	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_5	PF07728.14	gi|345006466|ref|YP_004809319.1|	-	0.028	14.4	0.1	0.058	13.4	0.1	1.5	1	1	0	1	1	1	0	AAA	domain	(dynein-related	subfamily)
Mg_chelatase	PF01078.21	gi|345006466|ref|YP_004809319.1|	-	0.054	12.9	0.1	0.23	10.8	0.0	1.9	1	1	0	2	2	2	0	Magnesium	chelatase,	subunit	ChlI
AAA_25	PF13481.6	gi|345006466|ref|YP_004809319.1|	-	0.08	12.5	0.1	5.5	6.5	0.1	2.4	2	1	0	2	2	2	0	AAA	domain
NB-ARC	PF00931.22	gi|345006466|ref|YP_004809319.1|	-	0.099	11.8	0.0	0.19	10.9	0.0	1.4	1	0	0	1	1	1	0	NB-ARC	domain
PRK	PF00485.18	gi|345006466|ref|YP_004809319.1|	-	0.11	12.2	0.0	0.18	11.5	0.0	1.3	1	0	0	1	1	1	0	Phosphoribulokinase	/	Uridine	kinase	family
AAA_33	PF13671.6	gi|345006466|ref|YP_004809319.1|	-	0.16	12.1	0.0	0.3	11.2	0.0	1.6	1	0	0	1	1	1	0	AAA	domain
ABC_tran	PF00005.27	gi|345006467|ref|YP_004809320.1|	-	1.2e-32	113.3	0.0	1.8e-32	112.7	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
oligo_HPY	PF08352.12	gi|345006467|ref|YP_004809320.1|	-	1.5e-15	57.4	0.2	2.9e-15	56.5	0.2	1.5	1	0	0	1	1	1	1	Oligopeptide/dipeptide	transporter,	C-terminal	region
AAA_21	PF13304.6	gi|345006467|ref|YP_004809320.1|	-	0.002	18.0	1.2	0.29	10.9	0.4	2.2	1	1	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_22	PF13401.6	gi|345006467|ref|YP_004809320.1|	-	0.0036	17.6	0.1	0.017	15.4	0.1	2.0	1	1	0	1	1	1	1	AAA	domain
ATPase	PF06745.13	gi|345006467|ref|YP_004809320.1|	-	0.0098	15.3	1.8	0.074	12.4	0.3	2.4	3	0	0	3	3	3	1	KaiC
AAA_24	PF13479.6	gi|345006467|ref|YP_004809320.1|	-	0.022	14.5	0.0	0.045	13.5	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
SMC_N	PF02463.19	gi|345006467|ref|YP_004809320.1|	-	0.028	13.9	0.0	0.046	13.2	0.0	1.3	1	0	0	1	1	1	0	RecF/RecN/SMC	N	terminal	domain
PRK	PF00485.18	gi|345006467|ref|YP_004809320.1|	-	0.034	13.9	0.0	0.048	13.4	0.0	1.3	1	0	0	1	1	1	0	Phosphoribulokinase	/	Uridine	kinase	family
AAA	PF00004.29	gi|345006467|ref|YP_004809320.1|	-	0.046	14.1	0.0	0.087	13.2	0.0	1.5	1	0	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
TrwB_AAD_bind	PF10412.9	gi|345006467|ref|YP_004809320.1|	-	0.086	11.7	0.0	0.12	11.3	0.0	1.1	1	0	0	1	1	1	0	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
Cupin_2	PF07883.11	gi|345006469|ref|YP_004809322.1|	-	4.9e-17	61.4	0.3	4.9e-17	61.4	0.3	1.6	2	0	0	2	2	2	1	Cupin	domain
AraC_binding	PF02311.19	gi|345006469|ref|YP_004809322.1|	-	2.2e-07	30.9	0.0	2.9e-07	30.4	0.0	1.2	1	0	0	1	1	1	1	AraC-like	ligand	binding	domain
Cupin_3	PF05899.12	gi|345006469|ref|YP_004809322.1|	-	3.1e-06	26.8	0.0	4.9e-06	26.1	0.0	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF861)
Cupin_6	PF12852.7	gi|345006469|ref|YP_004809322.1|	-	3.2e-06	27.0	0.0	3.7e-06	26.8	0.0	1.1	1	0	0	1	1	1	1	Cupin
Cupin_1	PF00190.22	gi|345006469|ref|YP_004809322.1|	-	4.3e-05	23.2	0.0	6.4e-05	22.6	0.0	1.3	1	0	0	1	1	1	1	Cupin
MannoseP_isomer	PF01050.18	gi|345006469|ref|YP_004809322.1|	-	0.00099	19.0	0.0	0.0011	18.8	0.0	1.2	1	0	0	1	1	1	1	Mannose-6-phosphate	isomerase
EutQ	PF06249.12	gi|345006469|ref|YP_004809322.1|	-	0.035	13.9	0.0	0.046	13.5	0.0	1.1	1	0	0	1	1	1	0	Ethanolamine	utilisation	protein	EutQ
cNMP_binding	PF00027.29	gi|345006469|ref|YP_004809322.1|	-	0.064	13.3	0.0	0.11	12.6	0.0	1.4	1	0	0	1	1	1	0	Cyclic	nucleotide-binding	domain
CENP-C_C	PF11699.8	gi|345006469|ref|YP_004809322.1|	-	0.068	13.4	0.0	0.096	12.9	0.0	1.2	1	0	0	1	1	1	0	Mif2/CENP-C	like
3-HAO	PF06052.12	gi|345006469|ref|YP_004809322.1|	-	0.13	11.9	0.0	0.17	11.5	0.0	1.3	1	0	0	1	1	1	0	3-hydroxyanthranilic	acid	dioxygenase
DUF3822	PF12864.7	gi|345006469|ref|YP_004809322.1|	-	0.16	11.1	0.0	0.24	10.5	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3822)
DUF1485	PF07364.12	gi|345006470|ref|YP_004809323.1|	-	1.7e-96	322.9	0.9	2.2e-96	322.6	0.9	1.1	1	0	0	1	1	1	1	Metallopeptidase	family	M81
MlrC_C	PF07171.12	gi|345006470|ref|YP_004809323.1|	-	1.1e-59	201.6	0.1	1.7e-59	200.9	0.1	1.3	1	0	0	1	1	1	1	MlrC	C-terminus
EutN_CcmL	PF03319.13	gi|345006470|ref|YP_004809323.1|	-	0.029	14.9	0.3	0.09	13.4	0.3	2.0	1	0	0	1	1	1	0	Ethanolamine	utilisation	protein	EutN/carboxysome
Amidohydro_3	PF07969.11	gi|345006471|ref|YP_004809324.1|	-	1e-38	134.0	8.8	1.7e-38	133.3	8.8	1.5	1	1	0	1	1	1	1	Amidohydrolase	family
Amidohydro_1	PF01979.20	gi|345006471|ref|YP_004809324.1|	-	1.2e-14	54.4	0.1	2.3e-10	40.3	0.0	3.5	2	1	1	3	3	3	2	Amidohydrolase	family
Amidohydro_3	PF07969.11	gi|345006472|ref|YP_004809325.1|	-	1.8e-41	143.1	6.9	5.4e-41	141.6	6.9	1.9	1	1	0	1	1	1	1	Amidohydrolase	family
Amidohydro_1	PF01979.20	gi|345006472|ref|YP_004809325.1|	-	2.2e-14	53.6	0.0	4.9e-10	39.2	0.0	2.8	2	2	1	3	3	3	2	Amidohydrolase	family
PALP	PF00291.25	gi|345006473|ref|YP_004809326.1|	-	1e-68	231.9	6.1	1.1e-68	231.8	6.1	1.0	1	0	0	1	1	1	1	Pyridoxal-phosphate	dependent	enzyme
Peptidase_M20	PF01546.28	gi|345006474|ref|YP_004809327.1|	-	1.6e-30	106.4	1.1	2.2e-30	105.9	1.1	1.2	1	0	0	1	1	1	1	Peptidase	family	M20/M25/M40
M20_dimer	PF07687.14	gi|345006474|ref|YP_004809327.1|	-	4e-05	23.5	0.0	8.6e-05	22.4	0.0	1.5	1	0	0	1	1	1	1	Peptidase	dimerisation	domain
Peptidase_M28	PF04389.17	gi|345006474|ref|YP_004809327.1|	-	0.00017	21.3	0.0	0.00052	19.8	0.0	1.7	2	0	0	2	2	2	1	Peptidase	family	M28
Fer2_4	PF13510.6	gi|345006474|ref|YP_004809327.1|	-	0.074	13.1	0.1	0.46	10.6	0.1	2.2	2	0	0	2	2	2	0	2Fe-2S	iron-sulfur	cluster	binding	domain
PALP	PF00291.25	gi|345006475|ref|YP_004809328.1|	-	6.8e-71	239.1	1.5	8.3e-71	238.8	1.5	1.1	1	0	0	1	1	1	1	Pyridoxal-phosphate	dependent	enzyme
HTH_10	PF04967.12	gi|345006476|ref|YP_004809329.1|	-	1.3e-19	69.7	0.0	2.5e-19	68.8	0.0	1.5	1	0	0	1	1	1	1	HTH	DNA	binding	domain
HTH_5	PF01022.20	gi|345006476|ref|YP_004809329.1|	-	0.00011	22.0	0.1	0.00048	19.9	0.0	2.1	3	0	0	3	3	3	1	Bacterial	regulatory	protein,	arsR	family
HTH_24	PF13412.6	gi|345006476|ref|YP_004809329.1|	-	0.0004	19.9	0.3	0.0021	17.6	0.1	2.3	3	0	0	3	3	3	1	Winged	helix-turn-helix	DNA-binding
HTH_20	PF12840.7	gi|345006476|ref|YP_004809329.1|	-	0.0013	18.7	0.1	0.0037	17.3	0.1	1.7	1	0	0	1	1	1	1	Helix-turn-helix	domain
MarR_2	PF12802.7	gi|345006476|ref|YP_004809329.1|	-	0.0024	17.7	0.0	0.0084	16.0	0.0	1.9	2	0	0	2	2	2	1	MarR	family
Sigma70_r4_2	PF08281.12	gi|345006476|ref|YP_004809329.1|	-	0.0025	17.4	1.3	0.042	13.5	1.3	2.3	1	1	0	1	1	1	1	Sigma-70,	region	4
Sigma70_r4	PF04545.16	gi|345006476|ref|YP_004809329.1|	-	0.013	15.0	1.2	0.052	13.1	0.1	2.4	2	0	0	2	2	2	0	Sigma-70,	region	4
HTH_11	PF08279.12	gi|345006476|ref|YP_004809329.1|	-	0.018	14.9	0.3	0.33	10.9	0.0	2.4	2	0	0	2	2	2	0	HTH	domain
HTH_30	PF13556.6	gi|345006476|ref|YP_004809329.1|	-	0.025	14.4	0.2	0.26	11.1	0.0	2.4	3	0	0	3	3	3	0	PucR	C-terminal	helix-turn-helix	domain
HTH_40	PF14493.6	gi|345006476|ref|YP_004809329.1|	-	0.097	13.1	0.0	14	6.2	0.0	2.9	3	0	0	3	3	3	0	Helix-turn-helix	domain
AsnC_trans_reg2	PF17805.1	gi|345006476|ref|YP_004809329.1|	-	0.11	12.7	0.1	0.41	10.8	0.0	2.0	2	0	0	2	2	2	0	AsnC-like	ligand	binding	domain
HTH_Tnp_1_2	PF13022.6	gi|345006476|ref|YP_004809329.1|	-	0.12	12.6	0.0	0.24	11.6	0.0	1.4	1	0	0	1	1	1	0	Helix-turn-helix	of	insertion	element	transposase
HTH_36	PF13730.6	gi|345006476|ref|YP_004809329.1|	-	0.18	11.8	0.0	0.37	10.8	0.0	1.5	1	0	0	1	1	1	0	Helix-turn-helix	domain
Peptidase_M19	PF01244.21	gi|345006477|ref|YP_004809330.1|	-	1.7e-65	221.3	0.0	2.1e-65	221.0	0.0	1.1	1	0	0	1	1	1	1	Membrane	dipeptidase	(Peptidase	family	M19)
Beta-lactamase	PF00144.24	gi|345006478|ref|YP_004809331.1|	-	2.2e-60	204.7	0.1	2.9e-60	204.2	0.1	1.1	1	0	0	1	1	1	1	Beta-lactamase
Pab87_oct	PF13969.6	gi|345006478|ref|YP_004809331.1|	-	2.6e-33	113.9	0.0	4.7e-33	113.1	0.0	1.4	1	0	0	1	1	1	1	Pab87	octamerisation	domain
DDE_Tnp_IS240	PF13610.6	gi|345006479|ref|YP_004809332.1|	-	8.4e-15	55.2	0.2	1.2e-14	54.7	0.2	1.2	1	0	0	1	1	1	1	DDE	domain
DDE_Tnp_IS66	PF03050.14	gi|345006479|ref|YP_004809332.1|	-	0.0016	18.0	1.6	0.0026	17.3	0.0	2.0	2	1	0	2	2	2	1	Transposase	IS66	family
tRNA_NucTransf2	PF09249.11	gi|345006481|ref|YP_004809334.1|	-	5.7e-44	149.0	0.0	1e-43	148.2	0.0	1.4	1	0	0	1	1	1	1	tRNA	nucleotidyltransferase,	second	domain
NTP_transf_2	PF01909.23	gi|345006481|ref|YP_004809334.1|	-	2.9e-11	43.5	0.0	6.2e-11	42.5	0.0	1.5	1	0	0	1	1	1	1	Nucleotidyltransferase	domain
Hist_deacetyl	PF00850.19	gi|345006482|ref|YP_004809335.1|	-	6.8e-83	278.7	0.0	9.5e-83	278.2	0.0	1.2	1	0	0	1	1	1	1	Histone	deacetylase	domain
Lipase_GDSL_2	PF13472.6	gi|345006482|ref|YP_004809335.1|	-	0.01	16.2	2.8	5.6	7.3	0.0	3.2	3	0	0	3	3	3	0	GDSL-like	Lipase/Acylhydrolase	family
CBFD_NFYB_HMF	PF00808.23	gi|345006483|ref|YP_004809336.1|	-	6e-23	80.9	0.4	3.8e-12	46.3	0.3	2.1	2	0	0	2	2	2	2	Histone-like	transcription	factor	(CBF/NF-Y)	and	archaeal	histone
Histone	PF00125.24	gi|345006483|ref|YP_004809336.1|	-	4e-11	43.4	2.2	4.1e-08	33.6	0.7	2.0	1	1	1	2	2	2	2	Core	histone	H2A/H2B/H3/H4
CENP-S	PF15630.6	gi|345006483|ref|YP_004809336.1|	-	0.00021	21.6	0.4	0.0005	20.4	0.3	1.6	1	1	0	1	1	1	1	CENP-S	protein
CENP-T_C	PF15511.6	gi|345006483|ref|YP_004809336.1|	-	0.00022	21.3	0.4	0.00066	19.8	0.1	1.8	2	0	0	2	2	2	1	Centromere	kinetochore	component	CENP-T	histone	fold
DUF1931	PF09123.11	gi|345006483|ref|YP_004809336.1|	-	0.0028	17.8	1.5	0.02	15.0	1.5	2.0	1	1	0	1	1	1	1	Domain	of	unknown	function	(DUF1931)
TFIID_20kDa	PF03847.13	gi|345006483|ref|YP_004809336.1|	-	0.0042	17.5	0.2	0.011	16.3	0.2	1.6	1	0	0	1	1	1	1	Transcription	initiation	factor	TFIID	subunit	A
TAF	PF02969.17	gi|345006483|ref|YP_004809336.1|	-	0.013	15.7	1.1	0.18	12.0	0.3	2.2	2	0	0	2	2	2	0	TATA	box	binding	protein	associated	factor	(TAF)
TFIID-18kDa	PF02269.16	gi|345006483|ref|YP_004809336.1|	-	0.017	15.1	0.1	0.66	10.0	0.0	2.2	2	0	0	2	2	2	0	Transcription	initiation	factor	IID,	18kD	subunit
Bromo_TP	PF07524.13	gi|345006483|ref|YP_004809336.1|	-	0.069	13.2	0.3	0.18	11.8	0.1	1.7	2	0	0	2	2	2	0	Bromodomain	associated
DUF3558	PF12079.8	gi|345006484|ref|YP_004809337.1|	-	0.71	9.9	15.4	2.8	7.9	15.4	1.9	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF3558)
Rad51	PF08423.11	gi|345006487|ref|YP_004809340.1|	-	5.6e-72	242.1	0.1	5e-71	238.9	0.1	1.9	1	1	0	1	1	1	1	Rad51
HHH_5	PF14520.6	gi|345006487|ref|YP_004809340.1|	-	6.6e-10	39.5	0.0	1.5e-09	38.3	0.0	1.6	1	0	0	1	1	1	1	Helix-hairpin-helix	domain
RecA	PF00154.21	gi|345006487|ref|YP_004809340.1|	-	1.1e-08	34.9	0.0	0.002	17.6	0.0	2.2	2	0	0	2	2	2	2	recA	bacterial	DNA	recombination	protein
HHH_2	PF12826.7	gi|345006487|ref|YP_004809340.1|	-	8e-05	22.7	0.1	0.00025	21.1	0.0	1.8	2	0	0	2	2	1	1	Helix-hairpin-helix	motif
HHH	PF00633.23	gi|345006487|ref|YP_004809340.1|	-	8.8e-05	22.2	2.7	0.00023	20.9	0.1	2.8	3	0	0	3	3	3	1	Helix-hairpin-helix	motif
AAA_25	PF13481.6	gi|345006487|ref|YP_004809340.1|	-	0.00051	19.7	0.0	0.00084	19.0	0.0	1.4	1	0	0	1	1	1	1	AAA	domain
Cdd1	PF11731.8	gi|345006487|ref|YP_004809340.1|	-	0.0016	18.7	0.0	0.0033	17.6	0.0	1.5	1	0	0	1	1	1	1	Pathogenicity	locus
ATPase	PF06745.13	gi|345006487|ref|YP_004809340.1|	-	0.0018	17.6	0.0	0.0037	16.6	0.0	1.6	1	0	0	1	1	1	1	KaiC
DNA_pol_lambd_f	PF10391.9	gi|345006487|ref|YP_004809340.1|	-	0.017	14.9	0.0	0.05	13.4	0.0	1.8	1	0	0	1	1	1	0	Fingers	domain	of	DNA	polymerase	lambda
ATPase_2	PF01637.18	gi|345006487|ref|YP_004809340.1|	-	0.038	13.9	0.0	0.056	13.3	0.0	1.3	1	0	0	1	1	1	0	ATPase	domain	predominantly	from	Archaea
IMS_HHH	PF11798.8	gi|345006487|ref|YP_004809340.1|	-	0.079	13.3	0.0	0.46	10.9	0.0	2.2	2	0	0	2	2	2	0	IMS	family	HHH	motif
HHH_8	PF14716.6	gi|345006487|ref|YP_004809340.1|	-	0.083	13.3	0.0	0.3	11.5	0.0	2.0	2	0	0	2	2	1	0	Helix-hairpin-helix	domain
BAF	PF02961.14	gi|345006487|ref|YP_004809340.1|	-	0.09	13.2	0.0	0.28	11.7	0.0	1.8	1	0	0	1	1	1	0	Barrier	to	autointegration	factor
AAA_22	PF13401.6	gi|345006487|ref|YP_004809340.1|	-	0.16	12.2	0.4	0.68	10.2	0.4	2.1	1	1	0	1	1	1	0	AAA	domain
PHP	PF02811.19	gi|345006491|ref|YP_004809344.1|	-	9.9e-07	29.2	0.0	1e-06	29.2	0.0	1.2	1	0	0	1	1	1	1	PHP	domain
PHP_C	PF13263.6	gi|345006491|ref|YP_004809344.1|	-	0.06	13.1	0.0	0.14	11.9	0.0	1.6	1	0	0	1	1	1	0	PHP-associated
SNARE_assoc	PF09335.11	gi|345006492|ref|YP_004809345.1|	-	1.5e-08	35.2	3.9	3.2e-08	34.1	3.9	1.6	1	1	0	1	1	1	1	SNARE	associated	Golgi	protein
RseC_MucC	PF04246.12	gi|345006492|ref|YP_004809345.1|	-	0.23	11.4	0.5	0.42	10.6	0.5	1.4	1	0	0	1	1	1	0	Positive	regulator	of	sigma(E),	RseC/MucC
ALAD	PF00490.21	gi|345006494|ref|YP_004809347.1|	-	2e-141	470.8	0.3	2.3e-141	470.6	0.3	1.0	1	0	0	1	1	1	1	Delta-aminolevulinic	acid	dehydratase
Aminotran_3	PF00202.21	gi|345006495|ref|YP_004809348.1|	-	4.7e-64	216.5	0.0	6.3e-64	216.1	0.0	1.1	1	0	0	1	1	1	1	Aminotransferase	class-III
Aminotran_1_2	PF00155.21	gi|345006495|ref|YP_004809348.1|	-	0.011	15.0	0.0	0.017	14.3	0.0	1.3	1	0	0	1	1	1	0	Aminotransferase	class	I	and	II
PAN_4	PF14295.6	gi|345006495|ref|YP_004809348.1|	-	0.039	13.9	0.2	0.081	12.9	0.2	1.4	1	0	0	1	1	1	0	PAN	domain
Porphobil_deam	PF01379.20	gi|345006496|ref|YP_004809349.1|	-	1.7e-61	207.3	0.3	4.7e-48	163.4	0.1	2.2	2	0	0	2	2	2	2	Porphobilinogen	deaminase,	dipyromethane	cofactor	binding	domain
Porphobil_deamC	PF03900.15	gi|345006496|ref|YP_004809349.1|	-	1.7e-11	44.3	0.0	4.3e-11	43.0	0.0	1.6	1	0	0	1	1	1	1	Porphobilinogen	deaminase,	C-terminal	domain
HEM4	PF02602.15	gi|345006497|ref|YP_004809350.1|	-	1.3e-38	132.6	1.5	1.6e-38	132.4	1.5	1.1	1	0	0	1	1	1	1	Uroporphyrinogen-III	synthase	HemD
Peripla_BP_6	PF13458.6	gi|345006497|ref|YP_004809350.1|	-	0.00029	20.6	0.5	0.00037	20.3	0.5	1.2	1	0	0	1	1	1	1	Periplasmic	binding	protein
G-patch	PF01585.23	gi|345006497|ref|YP_004809350.1|	-	0.23	11.4	0.0	0.47	10.4	0.0	1.5	1	0	0	1	1	1	0	G-patch	domain
dCMP_cyt_deam_1	PF00383.23	gi|345006498|ref|YP_004809351.1|	-	2.2e-15	56.3	0.0	2.9e-15	56.0	0.0	1.1	1	0	0	1	1	1	1	Cytidine	and	deoxycytidylate	deaminase	zinc-binding	region
MafB19-deam	PF14437.6	gi|345006498|ref|YP_004809351.1|	-	7.2e-13	48.5	0.0	8e-13	48.3	0.0	1.1	1	0	0	1	1	1	1	MafB19-like	deaminase
XOO_2897-deam	PF14440.6	gi|345006498|ref|YP_004809351.1|	-	0.0034	17.5	0.0	0.0054	16.8	0.0	1.4	1	1	0	1	1	1	1	Xanthomonas	XOO_2897-like	deaminase
APOBEC_N	PF08210.11	gi|345006498|ref|YP_004809351.1|	-	0.078	12.9	0.0	0.095	12.6	0.0	1.1	1	0	0	1	1	1	0	APOBEC-like	N-terminal	domain
SNAD4	PF18750.1	gi|345006498|ref|YP_004809351.1|	-	0.085	13.0	0.0	0.12	12.4	0.0	1.2	1	0	0	1	1	1	0	Secreted	Novel	AID/APOBEC-like	Deaminase	4
UPF0126	PF03458.13	gi|345006499|ref|YP_004809352.1|	-	8.3e-37	124.9	30.4	7.5e-19	67.4	10.7	2.4	2	1	0	2	2	2	2	UPF0126	domain
CTP_transf_like	PF01467.26	gi|345006500|ref|YP_004809353.1|	-	3.3e-14	53.3	0.1	1.1e-13	51.5	0.1	1.8	1	1	0	1	1	1	1	Cytidylyltransferase-like
Lon_C	PF05362.13	gi|345006501|ref|YP_004809354.1|	-	2.3e-34	118.8	4.4	3.4e-34	118.2	4.4	1.3	1	0	0	1	1	1	1	Lon	protease	(S16)	C-terminal	proteolytic	domain
AAA_32	PF13654.6	gi|345006501|ref|YP_004809354.1|	-	4.6e-28	98.3	0.0	1.9e-20	73.2	0.0	2.2	2	0	0	2	2	2	2	AAA	domain
Mg_chelatase	PF01078.21	gi|345006501|ref|YP_004809354.1|	-	3.8e-17	62.4	0.2	1.5e-10	40.8	0.1	2.4	2	0	0	2	2	2	2	Magnesium	chelatase,	subunit	ChlI
Sigma54_activat	PF00158.26	gi|345006501|ref|YP_004809354.1|	-	7.2e-14	51.8	0.1	9.7e-08	31.9	0.0	2.5	2	0	0	2	2	2	2	Sigma-54	interaction	domain
AAA_5	PF07728.14	gi|345006501|ref|YP_004809354.1|	-	2.2e-09	37.4	0.0	0.00055	19.9	0.0	3.0	3	0	0	3	3	3	2	AAA	domain	(dynein-related	subfamily)
ChlI	PF13541.6	gi|345006501|ref|YP_004809354.1|	-	2e-08	34.1	0.4	4.3e-08	33.0	0.4	1.5	1	0	0	1	1	1	1	Subunit	ChlI	of	Mg-chelatase
MCM	PF00493.23	gi|345006501|ref|YP_004809354.1|	-	7.6e-07	28.4	0.0	0.028	13.5	0.0	2.4	2	0	0	2	2	2	2	MCM	P-loop	domain
RuvB_N	PF05496.12	gi|345006501|ref|YP_004809354.1|	-	1e-06	28.6	0.1	0.0018	18.0	0.0	2.7	2	0	0	2	2	2	2	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
AAA	PF00004.29	gi|345006501|ref|YP_004809354.1|	-	2.7e-06	27.8	0.0	0.015	15.7	0.0	2.7	2	0	0	2	2	2	2	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_22	PF13401.6	gi|345006501|ref|YP_004809354.1|	-	4e-05	23.9	0.0	0.0015	18.8	0.0	2.5	2	0	0	2	2	2	1	AAA	domain
TIP49	PF06068.13	gi|345006501|ref|YP_004809354.1|	-	6.2e-05	22.4	0.4	0.13	11.4	0.0	2.5	3	0	0	3	3	3	2	TIP49	P-loop	domain
AAA_7	PF12775.7	gi|345006501|ref|YP_004809354.1|	-	0.00019	21.0	0.0	0.00069	19.2	0.0	1.9	2	0	0	2	2	2	1	P-loop	containing	dynein	motor	region
Sigma54_activ_2	PF14532.6	gi|345006501|ref|YP_004809354.1|	-	0.00032	20.8	0.0	0.36	10.9	0.0	2.5	2	0	0	2	2	2	2	Sigma-54	interaction	domain
AAA_3	PF07726.11	gi|345006501|ref|YP_004809354.1|	-	0.00063	19.6	0.1	1.6	8.6	0.0	2.6	2	0	0	2	2	2	2	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_19	PF13245.6	gi|345006501|ref|YP_004809354.1|	-	0.0011	19.3	0.0	0.44	10.9	0.0	2.4	2	0	0	2	2	2	1	AAA	domain
AAA_30	PF13604.6	gi|345006501|ref|YP_004809354.1|	-	0.0018	18.1	0.0	0.058	13.1	0.0	2.3	2	0	0	2	2	2	1	AAA	domain
PhoH	PF02562.16	gi|345006501|ref|YP_004809354.1|	-	0.0033	16.9	0.0	0.0072	15.8	0.0	1.5	1	0	0	1	1	1	1	PhoH-like	protein
MCM_lid	PF17855.1	gi|345006501|ref|YP_004809354.1|	-	0.0046	17.3	0.1	0.02	15.3	0.0	2.1	1	1	1	2	2	2	1	MCM	AAA-lid	domain
AAA_33	PF13671.6	gi|345006501|ref|YP_004809354.1|	-	0.0055	16.9	0.0	0.024	14.8	0.0	2.1	2	0	0	2	2	2	1	AAA	domain
AAA_2	PF07724.14	gi|345006501|ref|YP_004809354.1|	-	0.0085	16.2	0.0	4.6	7.3	0.0	2.6	2	0	0	2	2	2	1	AAA	domain	(Cdc48	subfamily)
AAA_PrkA	PF08298.11	gi|345006501|ref|YP_004809354.1|	-	0.012	14.5	0.0	0.41	9.5	0.0	2.3	2	0	0	2	2	2	0	PrkA	AAA	domain
DUF815	PF05673.13	gi|345006501|ref|YP_004809354.1|	-	0.018	14.2	0.0	0.036	13.2	0.0	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF815)
AAA_16	PF13191.6	gi|345006501|ref|YP_004809354.1|	-	0.02	15.3	0.0	0.24	11.8	0.0	2.4	2	0	0	2	2	2	0	AAA	ATPase	domain
IstB_IS21	PF01695.17	gi|345006501|ref|YP_004809354.1|	-	0.023	14.4	0.0	0.051	13.3	0.0	1.5	1	0	0	1	1	1	0	IstB-like	ATP	binding	protein
ABC_tran	PF00005.27	gi|345006501|ref|YP_004809354.1|	-	0.029	14.9	0.0	0.09	13.3	0.0	1.8	2	0	0	2	2	1	0	ABC	transporter
NACHT	PF05729.12	gi|345006501|ref|YP_004809354.1|	-	0.031	14.2	0.0	0.064	13.2	0.0	1.5	1	0	0	1	1	1	0	NACHT	domain
TrwB_AAD_bind	PF10412.9	gi|345006501|ref|YP_004809354.1|	-	0.047	12.6	0.0	0.078	11.9	0.0	1.3	1	0	0	1	1	1	0	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
Parvo_NS1	PF01057.17	gi|345006501|ref|YP_004809354.1|	-	0.051	12.6	0.0	0.081	12.0	0.0	1.2	1	0	0	1	1	1	0	Parvovirus	non-structural	protein	NS1
AAA_10	PF12846.7	gi|345006501|ref|YP_004809354.1|	-	0.1	11.5	0.0	0.3	10.0	0.0	1.7	2	0	0	2	2	2	0	AAA-like	domain
AAA_18	PF13238.6	gi|345006501|ref|YP_004809354.1|	-	0.12	12.9	0.0	0.58	10.7	0.0	2.1	2	0	0	2	2	2	0	AAA	domain
YfhD	PF14151.6	gi|345006501|ref|YP_004809354.1|	-	0.52	10.5	5.5	1.8	8.8	5.5	1.9	1	0	0	1	1	1	0	YfhD-like	protein
CPBP	PF02517.16	gi|345006502|ref|YP_004809355.1|	-	2.5e-14	53.4	10.0	2.5e-14	53.4	10.0	1.8	2	0	0	2	2	2	1	CPBP	intramembrane	metalloprotease
TatC	PF00902.18	gi|345006503|ref|YP_004809356.1|	-	5.5e-38	130.9	12.3	6.8e-38	130.6	12.3	1.0	1	0	0	1	1	1	1	Sec-independent	protein	translocase	protein	(TatC)
TatC	PF00902.18	gi|345006504|ref|YP_004809357.1|	-	1.8e-66	223.9	48.4	2.2e-38	132.2	13.7	2.9	3	0	0	3	3	3	2	Sec-independent	protein	translocase	protein	(TatC)
MAGE	PF01454.19	gi|345006504|ref|YP_004809357.1|	-	0.27	10.9	0.0	1.5	8.5	0.0	1.9	2	0	0	2	2	2	0	MAGE	family
RHH_1	PF01402.21	gi|345006505|ref|YP_004809358.1|	-	9.5e-06	25.4	0.1	1.5e-05	24.7	0.0	1.4	1	1	0	1	1	1	1	Ribbon-helix-helix	protein,	copG	family
RHH_8	PF17723.1	gi|345006505|ref|YP_004809358.1|	-	0.00084	19.5	0.1	0.00087	19.5	0.1	1.1	1	0	0	1	1	1	1	Ribbon-Helix-Helix	transcriptional	regulator	family
Vut_1	PF02592.15	gi|345006506|ref|YP_004809359.1|	-	2.9e-50	170.5	5.3	2.9e-50	170.5	5.3	1.4	2	0	0	2	2	2	1	Putative	vitamin	uptake	transporter
SLATT_fungal	PF18142.1	gi|345006506|ref|YP_004809359.1|	-	0.018	15.1	0.5	0.018	15.1	0.5	1.6	2	0	0	2	2	2	0	SMODS	and	SLOG-associating	2TM	effector	domain
FtsJ	PF01728.19	gi|345006507|ref|YP_004809360.1|	-	7e-55	185.9	0.0	9.1e-55	185.5	0.0	1.1	1	0	0	1	1	1	1	FtsJ-like	methyltransferase
TRAM	PF01938.20	gi|345006507|ref|YP_004809360.1|	-	9.2e-12	44.8	2.5	9.2e-12	44.8	2.5	1.8	2	0	0	2	2	2	1	TRAM	domain
Methyltransf_31	PF13847.6	gi|345006507|ref|YP_004809360.1|	-	1.9e-06	27.8	0.0	1.8e-05	24.6	0.0	2.1	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.6	gi|345006507|ref|YP_004809360.1|	-	0.0022	18.6	0.1	0.0092	16.7	0.1	2.2	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.6	gi|345006507|ref|YP_004809360.1|	-	0.0023	17.8	0.0	0.0043	16.9	0.0	1.4	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltr_RsmB-F	PF01189.17	gi|345006507|ref|YP_004809360.1|	-	0.12	12.0	0.0	0.18	11.4	0.0	1.3	1	0	0	1	1	1	0	16S	rRNA	methyltransferase	RsmB/F
Cupin_2	PF07883.11	gi|345006509|ref|YP_004809362.1|	-	4e-10	39.2	0.2	6.3e-10	38.6	0.2	1.4	1	0	0	1	1	1	1	Cupin	domain
AraC_binding	PF02311.19	gi|345006509|ref|YP_004809362.1|	-	0.00013	21.9	0.0	0.00019	21.3	0.0	1.3	1	0	0	1	1	1	1	AraC-like	ligand	binding	domain
AraC_binding_2	PF14525.6	gi|345006509|ref|YP_004809362.1|	-	0.00044	20.0	0.1	0.00047	19.9	0.1	1.2	1	0	0	1	1	1	1	AraC-binding-like	domain
Cupin_3	PF05899.12	gi|345006509|ref|YP_004809362.1|	-	0.0045	16.7	0.1	0.006	16.2	0.1	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF861)
Pirin_C	PF05726.13	gi|345006509|ref|YP_004809362.1|	-	0.0058	17.0	0.0	0.0079	16.5	0.0	1.1	1	0	0	1	1	1	1	Pirin	C-terminal	cupin	domain
Cupin_1	PF00190.22	gi|345006509|ref|YP_004809362.1|	-	0.04	13.5	0.0	0.054	13.1	0.0	1.3	1	0	0	1	1	1	0	Cupin
Ppnp	PF06865.11	gi|345006509|ref|YP_004809362.1|	-	0.063	13.7	0.0	0.083	13.3	0.0	1.2	1	0	0	1	1	1	0	Pyrimidine/purine	nucleoside	phosphorylase
Usp	PF00582.26	gi|345006511|ref|YP_004809364.1|	-	4.1e-34	118.1	2.3	4.7e-34	117.9	2.3	1.0	1	0	0	1	1	1	1	Universal	stress	protein	family
DUF4491	PF14898.6	gi|345006512|ref|YP_004809365.1|	-	0.0052	17.2	1.4	0.0079	16.6	0.0	2.0	2	1	0	2	2	2	1	Domain	of	unknown	function	(DUF4491)
DUF3007	PF11460.8	gi|345006512|ref|YP_004809365.1|	-	0.03	14.6	0.2	0.062	13.6	0.2	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3007)
DUF2238	PF09997.9	gi|345006512|ref|YP_004809365.1|	-	0.066	13.0	1.2	0.25	11.1	1.2	2.1	1	1	0	1	1	1	0	Predicted	membrane	protein	(DUF2238)
FmdA_AmdA	PF03069.15	gi|345006513|ref|YP_004809366.1|	-	2.3e-62	211.0	0.1	9.5e-35	120.1	0.1	2.0	1	1	1	2	2	2	2	Acetamidase/Formamidase	family
Aldo_ket_red	PF00248.21	gi|345006514|ref|YP_004809367.1|	-	1.4e-75	254.3	0.0	1.6e-75	254.0	0.0	1.0	1	0	0	1	1	1	1	Aldo/keto	reductase	family
Beta_elim_lyase	PF01212.21	gi|345006515|ref|YP_004809368.1|	-	1.6e-86	290.2	0.7	1.9e-86	290.0	0.7	1.1	1	0	0	1	1	1	1	Beta-eliminating	lyase
Aminotran_3	PF00202.21	gi|345006515|ref|YP_004809368.1|	-	0.0078	14.9	0.0	0.049	12.3	0.0	2.0	2	0	0	2	2	2	1	Aminotransferase	class-III
DegT_DnrJ_EryC1	PF01041.17	gi|345006515|ref|YP_004809368.1|	-	0.036	13.4	0.3	0.068	12.5	0.0	1.6	2	0	0	2	2	2	0	DegT/DnrJ/EryC1/StrS	aminotransferase	family
GAF_2	PF13185.6	gi|345006516|ref|YP_004809369.1|	-	5.8e-28	97.9	10.8	2.6e-11	44.0	0.1	3.9	3	0	0	3	3	3	3	GAF	domain
GAF_3	PF13492.6	gi|345006516|ref|YP_004809369.1|	-	7.5e-20	71.6	3.3	3.2e-07	30.8	0.3	3.8	3	1	0	3	3	3	3	GAF	domain
HATPase_c	PF02518.26	gi|345006516|ref|YP_004809369.1|	-	5e-16	59.2	0.0	1.2e-15	57.9	0.0	1.7	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
GAF	PF01590.26	gi|345006516|ref|YP_004809369.1|	-	3.3e-14	53.6	1.2	0.0015	19.2	0.4	3.6	3	0	0	3	3	3	3	GAF	domain
HisKA	PF00512.25	gi|345006516|ref|YP_004809369.1|	-	7e-13	48.4	0.6	7e-13	48.4	0.6	2.7	3	0	0	3	3	3	1	His	Kinase	A	(phospho-acceptor)	domain
PAS_4	PF08448.10	gi|345006516|ref|YP_004809369.1|	-	1.7e-08	34.7	0.0	1.7e-08	34.7	0.0	4.0	5	0	0	5	5	5	1	PAS	fold
PAS_9	PF13426.7	gi|345006516|ref|YP_004809369.1|	-	8.3e-08	32.4	0.0	2.1e-07	31.1	0.0	1.7	1	0	0	1	1	1	1	PAS	domain
HATPase_c_2	PF13581.6	gi|345006516|ref|YP_004809369.1|	-	0.00016	21.6	0.1	0.0005	20.0	0.1	1.9	1	0	0	1	1	1	1	Histidine	kinase-like	ATPase	domain
PAS_8	PF13188.7	gi|345006516|ref|YP_004809369.1|	-	0.00017	21.5	0.0	0.00057	19.8	0.0	1.9	1	0	0	1	1	1	1	PAS	domain
PAS_3	PF08447.12	gi|345006516|ref|YP_004809369.1|	-	0.00067	19.9	0.0	0.002	18.4	0.0	1.8	1	0	0	1	1	1	1	PAS	fold
PAS	PF00989.25	gi|345006516|ref|YP_004809369.1|	-	0.0038	17.2	0.0	0.013	15.5	0.0	1.9	1	0	0	1	1	1	1	PAS	fold
SPOB_a	PF14689.6	gi|345006516|ref|YP_004809369.1|	-	0.023	14.4	0.0	0.046	13.4	0.0	1.5	1	0	0	1	1	1	0	Sensor_kinase_SpoOB-type,	alpha-helical	domain
tRNA-synt_2c	PF01411.19	gi|345006517|ref|YP_004809370.1|	-	4.3e-115	385.3	0.0	5.5e-115	385.0	0.0	1.1	1	0	0	1	1	1	1	tRNA	synthetases	class	II	(A)
DHHA1	PF02272.19	gi|345006517|ref|YP_004809370.1|	-	2.3e-17	63.7	1.5	5.8e-17	62.4	1.5	1.8	1	0	0	1	1	1	1	DHHA1	domain
tRNA_SAD	PF07973.14	gi|345006517|ref|YP_004809370.1|	-	8.1e-12	45.0	0.8	1.8e-11	43.9	0.8	1.6	1	0	0	1	1	1	1	Threonyl	and	Alanyl	tRNA	synthetase	second	additional	domain
tRNA-synt_2e	PF02091.15	gi|345006517|ref|YP_004809370.1|	-	0.12	11.6	0.2	0.29	10.4	0.2	1.5	1	1	0	1	1	1	0	Glycyl-tRNA	synthetase	alpha	subunit
PrcB_C	PF14343.6	gi|345006517|ref|YP_004809370.1|	-	0.12	12.5	1.1	0.37	11.0	0.1	2.3	3	0	0	3	3	3	0	PrcB	C-terminal
DUF883	PF05957.13	gi|345006517|ref|YP_004809370.1|	-	8.7	7.0	9.7	2.9	8.6	1.2	3.6	4	0	0	4	4	4	0	Bacterial	protein	of	unknown	function	(DUF883)
zf-RING_5	PF14634.6	gi|345006518|ref|YP_004809371.1|	-	0.0014	18.5	2.4	0.004	17.1	2.4	1.7	1	1	0	1	1	1	1	zinc-RING	finger	domain
DZR	PF12773.7	gi|345006518|ref|YP_004809371.1|	-	0.0021	18.0	5.2	0.62	10.1	5.2	2.2	1	1	0	1	1	1	1	Double	zinc	ribbon
C1_1	PF00130.22	gi|345006518|ref|YP_004809371.1|	-	0.0046	16.8	0.8	0.014	15.3	0.1	2.0	1	1	1	2	2	2	1	Phorbol	esters/diacylglycerol	binding	domain	(C1	domain)
DUF1451	PF07295.11	gi|345006518|ref|YP_004809371.1|	-	0.0073	16.4	4.1	0.0078	16.3	1.0	1.9	2	0	0	2	2	2	1	Zinc-ribbon	containing	domain
Prok-RING_4	PF14447.6	gi|345006518|ref|YP_004809371.1|	-	0.0094	15.8	1.5	0.0094	15.8	1.5	1.8	2	0	0	2	2	2	1	Prokaryotic	RING	finger	family	4
FYVE	PF01363.21	gi|345006518|ref|YP_004809371.1|	-	0.035	14.2	4.5	0.087	13.0	4.5	1.8	1	1	0	1	1	1	0	FYVE	zinc	finger
zf-UDP	PF14569.6	gi|345006518|ref|YP_004809371.1|	-	0.059	13.5	3.5	0.098	12.8	3.5	1.6	1	1	0	1	1	1	0	Zinc-binding	RING-finger
zf-FPG_IleRS	PF06827.14	gi|345006518|ref|YP_004809371.1|	-	0.063	13.2	5.6	1.5	8.7	1.9	3.0	2	1	1	3	3	3	0	Zinc	finger	found	in	FPG	and	IleRS
Zn-ribbon_8	PF09723.10	gi|345006518|ref|YP_004809371.1|	-	0.26	11.4	13.7	12	6.2	0.1	3.2	2	1	0	2	2	2	0	Zinc	ribbon	domain
DUF1272	PF06906.11	gi|345006518|ref|YP_004809371.1|	-	0.39	10.8	9.5	11	6.2	9.5	2.7	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF1272)
zf-B_box	PF00643.24	gi|345006518|ref|YP_004809371.1|	-	1.7	8.8	9.1	0.5	10.6	1.5	2.8	3	0	0	3	3	3	0	B-box	zinc	finger
C1_2	PF03107.16	gi|345006518|ref|YP_004809371.1|	-	2.2	8.7	10.8	3.5	8.0	6.9	2.7	2	1	0	2	2	2	0	C1	domain
Zn_ribbon_SprT	PF17283.2	gi|345006518|ref|YP_004809371.1|	-	2.2	8.3	10.5	1.7	8.6	0.9	3.4	3	1	0	3	3	3	0	SprT-like	zinc	ribbon	domain
Abhydrolase_1	PF00561.20	gi|345006519|ref|YP_004809372.1|	-	1.7e-17	63.9	0.1	2.2e-09	37.4	0.0	2.1	1	1	1	2	2	2	2	alpha/beta	hydrolase	fold
Abhydrolase_6	PF12697.7	gi|345006519|ref|YP_004809372.1|	-	1.9e-14	54.8	6.2	2.3e-14	54.5	6.2	1.0	1	0	0	1	1	1	1	Alpha/beta	hydrolase	family
Hydrolase_4	PF12146.8	gi|345006519|ref|YP_004809372.1|	-	5.4e-10	38.9	0.1	2e-09	37.1	0.1	1.8	1	1	0	1	1	1	1	Serine	aminopeptidase,	S33
Abhydrolase_4	PF08386.10	gi|345006519|ref|YP_004809372.1|	-	0.00038	20.5	0.0	0.0007	19.7	0.0	1.5	1	0	0	1	1	1	1	TAP-like	protein
Thioesterase	PF00975.20	gi|345006519|ref|YP_004809372.1|	-	0.00096	19.3	0.0	0.0018	18.4	0.0	1.3	1	1	0	1	1	1	1	Thioesterase	domain
Peptidase_S9	PF00326.21	gi|345006519|ref|YP_004809372.1|	-	0.0057	16.2	0.0	0.008	15.7	0.0	1.2	1	0	0	1	1	1	1	Prolyl	oligopeptidase	family
Esterase_phd	PF10503.9	gi|345006519|ref|YP_004809372.1|	-	0.041	13.4	0.3	0.37	10.2	0.0	2.0	2	0	0	2	2	2	0	Esterase	PHB	depolymerase
NAD_binding_8	PF13450.6	gi|345006519|ref|YP_004809372.1|	-	0.055	13.7	0.1	0.11	12.8	0.1	1.5	1	0	0	1	1	1	0	NAD(P)-binding	Rossmann-like	domain
GHMP_kinases_C	PF08544.13	gi|345006519|ref|YP_004809372.1|	-	0.11	12.8	0.1	0.37	11.2	0.1	1.9	1	1	0	1	1	1	0	GHMP	kinases	C	terminal
Mem_trans	PF03547.18	gi|345006520|ref|YP_004809373.1|	-	0.0067	14.9	3.1	0.0075	14.7	3.1	1.0	1	0	0	1	1	1	1	Membrane	transport	protein
HTH_31	PF13560.6	gi|345006521|ref|YP_004809374.1|	-	4.5e-06	26.9	0.2	9.1e-06	25.9	0.2	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_19	PF12844.7	gi|345006521|ref|YP_004809374.1|	-	6.2e-05	22.9	0.0	9.7e-05	22.3	0.0	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_3	PF01381.22	gi|345006521|ref|YP_004809374.1|	-	0.0012	18.9	1.1	0.0033	17.5	0.0	2.0	2	0	0	2	2	2	1	Helix-turn-helix
HTH_25	PF13413.6	gi|345006521|ref|YP_004809374.1|	-	0.0019	18.0	1.8	0.0022	17.8	0.1	1.9	2	0	0	2	2	2	1	Helix-turn-helix	domain
PhnA_Zn_Ribbon	PF08274.12	gi|345006521|ref|YP_004809374.1|	-	0.026	14.5	0.8	0.051	13.5	0.8	1.4	1	0	0	1	1	1	0	PhnA	Zinc-Ribbon
HTH_17	PF12728.7	gi|345006521|ref|YP_004809374.1|	-	0.07	13.3	0.1	0.22	11.7	0.0	1.8	2	0	0	2	2	2	0	Helix-turn-helix	domain
Sigma70_r3	PF04539.16	gi|345006521|ref|YP_004809374.1|	-	0.071	13.2	0.4	0.14	12.2	0.4	1.5	1	0	0	1	1	1	0	Sigma-70	region	3
Sigma70_r4_2	PF08281.12	gi|345006521|ref|YP_004809374.1|	-	0.079	12.7	0.1	0.15	11.8	0.1	1.4	1	0	0	1	1	1	0	Sigma-70,	region	4
EamA	PF00892.20	gi|345006522|ref|YP_004809375.1|	-	7.5e-22	78.0	31.1	5.1e-14	52.6	13.4	2.0	2	0	0	2	2	2	2	EamA-like	transporter	family
TPT	PF03151.16	gi|345006522|ref|YP_004809375.1|	-	0.00058	19.3	11.5	0.02	14.2	2.8	2.2	1	1	0	2	2	2	2	Triose-phosphate	Transporter	family
ATP-grasp_2	PF08442.10	gi|345006523|ref|YP_004809376.1|	-	7.1e-64	215.1	1.4	1.2e-63	214.4	1.4	1.3	1	0	0	1	1	1	1	ATP-grasp	domain
ATP-grasp_5	PF13549.6	gi|345006523|ref|YP_004809376.1|	-	1.5e-17	63.9	7.8	5.4e-17	62.0	5.1	2.5	2	1	0	2	2	2	1	ATP-grasp	domain
Ligase_CoA	PF00549.19	gi|345006523|ref|YP_004809376.1|	-	7.8e-12	45.3	1.7	1.6e-11	44.2	0.6	2.0	2	0	0	2	2	2	1	CoA-ligase
CPSase_L_D2	PF02786.17	gi|345006523|ref|YP_004809376.1|	-	1.8e-10	40.7	3.0	1.4e-07	31.3	0.6	2.2	2	0	0	2	2	2	2	Carbamoyl-phosphate	synthase	L	chain,	ATP	binding	domain
ATP-grasp	PF02222.22	gi|345006523|ref|YP_004809376.1|	-	3.9e-07	29.8	0.1	7.4e-07	28.9	0.1	1.5	1	0	0	1	1	1	1	ATP-grasp	domain
GARS_A	PF01071.19	gi|345006523|ref|YP_004809376.1|	-	1.2e-05	25.2	1.4	1.4e-05	24.9	0.2	1.8	2	0	0	2	2	2	1	Phosphoribosylglycinamide	synthetase,	ATP-grasp	(A)	domain
Dala_Dala_lig_C	PF07478.13	gi|345006523|ref|YP_004809376.1|	-	0.012	15.2	0.7	0.03	13.8	0.7	1.8	1	1	0	1	1	1	0	D-ala	D-ala	ligase	C-terminus
CoA_binding	PF02629.19	gi|345006524|ref|YP_004809377.1|	-	1.9e-23	82.9	3.9	1.9e-23	82.9	1.3	2.3	2	1	1	3	3	3	1	CoA	binding	domain
Ligase_CoA	PF00549.19	gi|345006524|ref|YP_004809377.1|	-	1.8e-14	53.8	1.0	3.7e-14	52.8	1.0	1.5	1	0	0	1	1	1	1	CoA-ligase
Succ_CoA_lig	PF13607.6	gi|345006524|ref|YP_004809377.1|	-	1.1e-10	41.4	0.0	1.8e-10	40.8	0.0	1.3	1	0	0	1	1	1	1	Succinyl-CoA	ligase	like	flavodoxin	domain
CoA_binding_2	PF13380.6	gi|345006524|ref|YP_004809377.1|	-	0.0002	21.8	0.1	0.0024	18.3	0.1	2.2	2	0	0	2	2	2	1	CoA	binding	domain
IlvN	PF07991.12	gi|345006524|ref|YP_004809377.1|	-	0.00039	20.0	0.2	0.00068	19.2	0.2	1.4	1	0	0	1	1	1	1	Acetohydroxy	acid	isomeroreductase,	NADPH-binding	domain
HTH_10	PF04967.12	gi|345006525|ref|YP_004809378.1|	-	1.6e-14	53.4	0.0	2.5e-14	52.8	0.0	1.3	1	0	0	1	1	1	1	HTH	DNA	binding	domain
BAT	PF15915.5	gi|345006525|ref|YP_004809378.1|	-	1.8e-12	47.4	1.1	2.4e-12	47.0	0.2	1.6	2	0	0	2	2	2	1	GAF	and	HTH_10	associated	domain
HTH_AsnC-type	PF13404.6	gi|345006525|ref|YP_004809378.1|	-	0.15	12.0	0.8	1.1	9.2	0.2	2.3	2	0	0	2	2	2	0	AsnC-type	helix-turn-helix	domain
PALP	PF00291.25	gi|345006526|ref|YP_004809379.1|	-	4e-58	197.2	8.3	4.6e-58	197.0	8.3	1.0	1	0	0	1	1	1	1	Pyridoxal-phosphate	dependent	enzyme
ACP_syn_III_C	PF08541.10	gi|345006526|ref|YP_004809379.1|	-	0.021	15.0	0.4	0.078	13.2	0.2	2.0	2	0	0	2	2	2	0	3-Oxoacyl-[acyl-carrier-protein	(ACP)]	synthase	III	C	terminal
Nif11	PF07862.11	gi|345006527|ref|YP_004809380.1|	-	0.1	12.9	0.1	0.31	11.4	0.1	1.9	1	1	0	1	1	1	0	Nif11	domain
Pribosyltran_N	PF13793.6	gi|345006528|ref|YP_004809381.1|	-	6.6e-21	74.4	0.1	2.5e-20	72.6	0.0	1.9	2	0	0	2	2	2	1	N-terminal	domain	of	ribose	phosphate	pyrophosphokinase
Pribosyltran	PF00156.27	gi|345006528|ref|YP_004809381.1|	-	2.7e-13	49.7	0.1	8.5e-13	48.1	0.2	1.8	2	0	0	2	2	2	1	Phosphoribosyl	transferase	domain
Pribosyl_synth	PF14572.6	gi|345006528|ref|YP_004809381.1|	-	4.1e-05	23.7	0.2	7.4e-05	22.9	0.2	1.3	1	0	0	1	1	1	1	Phosphoribosyl	synthetase-associated	domain
PRTase_2	PF15609.6	gi|345006528|ref|YP_004809381.1|	-	8.3e-05	22.2	0.1	0.00076	19.0	0.1	2.2	1	1	1	2	2	2	1	Phosphoribosyl	transferase
UPRTase	PF14681.6	gi|345006528|ref|YP_004809381.1|	-	0.00023	20.7	0.0	0.00043	19.8	0.0	1.4	1	0	0	1	1	1	1	Uracil	phosphoribosyltransferase
Extensin-like_C	PF06904.12	gi|345006528|ref|YP_004809381.1|	-	0.16	12.0	0.2	0.25	11.4	0.2	1.2	1	0	0	1	1	1	0	Extensin-like	protein	C-terminus
DAO	PF01266.24	gi|345006529|ref|YP_004809382.1|	-	4.6e-50	171.2	4.7	5.6e-50	170.9	4.7	1.0	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
Pyr_redox_2	PF07992.14	gi|345006529|ref|YP_004809382.1|	-	5.4e-07	29.1	1.4	1.8e-05	24.1	1.1	2.8	2	1	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_3	PF13738.6	gi|345006529|ref|YP_004809382.1|	-	0.00059	19.2	6.1	0.057	12.7	1.4	2.6	2	1	1	3	3	3	2	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_binding_2	PF00890.24	gi|345006529|ref|YP_004809382.1|	-	0.001	18.3	7.5	0.0029	16.8	7.5	1.7	1	1	0	1	1	1	1	FAD	binding	domain
FAD_binding_3	PF01494.19	gi|345006529|ref|YP_004809382.1|	-	0.015	14.5	1.1	0.046	13.0	1.1	1.7	1	1	0	1	1	1	0	FAD	binding	domain
ApbA	PF02558.16	gi|345006529|ref|YP_004809382.1|	-	0.031	13.9	1.0	0.06	13.0	1.0	1.5	1	0	0	1	1	1	0	Ketopantoate	reductase	PanE/ApbA
Thi4	PF01946.17	gi|345006529|ref|YP_004809382.1|	-	0.046	13.0	0.5	0.046	13.0	0.5	1.7	2	0	0	2	2	2	0	Thi4	family
AlaDh_PNT_C	PF01262.21	gi|345006529|ref|YP_004809382.1|	-	0.063	12.6	0.4	1	8.6	0.0	2.5	2	1	1	3	3	3	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
TrkA_N	PF02254.18	gi|345006529|ref|YP_004809382.1|	-	0.065	13.5	0.8	0.065	13.5	0.8	2.1	3	0	0	3	3	2	0	TrkA-N	domain
NAD_binding_8	PF13450.6	gi|345006529|ref|YP_004809382.1|	-	0.076	13.2	0.5	0.076	13.2	0.5	2.6	2	0	0	2	2	2	0	NAD(P)-binding	Rossmann-like	domain
GMC_oxred_N	PF00732.19	gi|345006529|ref|YP_004809382.1|	-	0.085	12.2	0.2	3.9	6.8	0.0	2.1	2	0	0	2	2	2	0	GMC	oxidoreductase
NAD_binding_9	PF13454.6	gi|345006529|ref|YP_004809382.1|	-	0.14	12.1	4.9	2.4	8.1	0.2	2.4	2	0	0	2	2	2	0	FAD-NAD(P)-binding
HI0933_like	PF03486.14	gi|345006529|ref|YP_004809382.1|	-	0.15	10.8	9.8	0.49	9.0	0.0	2.9	2	1	1	3	3	3	0	HI0933-like	protein
GDI	PF00996.18	gi|345006529|ref|YP_004809382.1|	-	0.27	9.7	0.0	1.2	7.6	0.0	1.8	2	0	0	2	2	2	0	GDP	dissociation	inhibitor
Pyr_redox	PF00070.27	gi|345006529|ref|YP_004809382.1|	-	0.34	11.5	4.1	9.4	6.9	2.4	2.8	2	0	0	2	2	2	0	Pyridine	nucleotide-disulphide	oxidoreductase
Trp_halogenase	PF04820.14	gi|345006529|ref|YP_004809382.1|	-	1.1	8.1	2.7	0.9	8.3	0.1	1.9	1	1	1	2	2	2	0	Tryptophan	halogenase
Lycopene_cycl	PF05834.12	gi|345006529|ref|YP_004809382.1|	-	1.4	7.9	4.8	1.3	8.0	2.2	2.0	2	0	0	2	2	2	0	Lycopene	cyclase	protein
Aminotran_3	PF00202.21	gi|345006530|ref|YP_004809383.1|	-	2.2e-99	332.9	0.0	2.8e-99	332.6	0.0	1.0	1	0	0	1	1	1	1	Aminotransferase	class-III
Aminotran_1_2	PF00155.21	gi|345006530|ref|YP_004809383.1|	-	0.0032	16.7	0.0	0.0099	15.1	0.0	1.7	2	0	0	2	2	2	1	Aminotransferase	class	I	and	II
AsnC_trans_reg	PF01037.21	gi|345006531|ref|YP_004809384.1|	-	5.8e-12	45.4	0.4	9.2e-12	44.8	0.4	1.3	1	0	0	1	1	1	1	Lrp/AsnC	ligand	binding	domain
HTH_24	PF13412.6	gi|345006531|ref|YP_004809384.1|	-	9e-10	38.0	0.0	1.3e-09	37.4	0.0	1.3	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_AsnC-type	PF13404.6	gi|345006531|ref|YP_004809384.1|	-	1.2e-06	28.2	0.0	2e-06	27.5	0.0	1.4	1	0	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
MarR_2	PF12802.7	gi|345006531|ref|YP_004809384.1|	-	3.4e-05	23.6	0.0	6.1e-05	22.8	0.0	1.3	1	0	0	1	1	1	1	MarR	family
GYD	PF08734.11	gi|345006531|ref|YP_004809384.1|	-	0.00049	20.0	0.4	0.00074	19.4	0.4	1.5	1	0	0	1	1	1	1	GYD	domain
HTH_11	PF08279.12	gi|345006531|ref|YP_004809384.1|	-	0.00064	19.6	0.0	0.0011	18.8	0.0	1.3	1	0	0	1	1	1	1	HTH	domain
HTH_20	PF12840.7	gi|345006531|ref|YP_004809384.1|	-	0.00094	19.2	0.0	0.0015	18.5	0.0	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_5	PF01022.20	gi|345006531|ref|YP_004809384.1|	-	0.0016	18.2	0.1	0.0032	17.3	0.1	1.4	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_10	PF04967.12	gi|345006531|ref|YP_004809384.1|	-	0.0027	17.5	0.0	0.0045	16.8	0.0	1.4	1	0	0	1	1	1	1	HTH	DNA	binding	domain
HTH_27	PF13463.6	gi|345006531|ref|YP_004809384.1|	-	0.0097	16.4	0.1	0.029	14.9	0.0	1.7	2	0	0	2	2	2	1	Winged	helix	DNA-binding	domain
HTH_WhiA	PF02650.14	gi|345006531|ref|YP_004809384.1|	-	0.014	15.7	0.0	0.027	14.8	0.0	1.4	1	0	0	1	1	1	0	WhiA	C-terminal	HTH	domain
HTH_IclR	PF09339.10	gi|345006531|ref|YP_004809384.1|	-	0.016	15.0	0.0	0.025	14.4	0.0	1.3	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
YjcQ	PF09639.10	gi|345006531|ref|YP_004809384.1|	-	0.056	13.7	0.0	0.11	12.7	0.0	1.5	1	0	0	1	1	1	0	YjcQ	protein
B-block_TFIIIC	PF04182.12	gi|345006531|ref|YP_004809384.1|	-	0.058	13.6	0.0	0.089	13.0	0.0	1.2	1	0	0	1	1	1	0	B-block	binding	subunit	of	TFIIIC
HTH_Crp_2	PF13545.6	gi|345006531|ref|YP_004809384.1|	-	0.076	13.0	0.0	0.14	12.2	0.0	1.4	1	0	0	1	1	1	0	Crp-like	helix-turn-helix	domain
MarR	PF01047.22	gi|345006531|ref|YP_004809384.1|	-	0.09	12.7	0.0	0.18	11.8	0.0	1.4	1	0	0	1	1	1	0	MarR	family
DDRGK	PF09756.9	gi|345006531|ref|YP_004809384.1|	-	0.15	11.6	0.0	0.24	11.0	0.0	1.3	1	0	0	1	1	1	0	DDRGK	domain
SBP_bac_8	PF13416.6	gi|345006532|ref|YP_004809385.1|	-	5.3e-16	59.3	0.2	7.3e-16	58.8	0.2	1.2	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_6	PF13343.6	gi|345006532|ref|YP_004809385.1|	-	1.8e-12	47.2	0.2	2.6e-12	46.7	0.2	1.2	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_1	PF01547.25	gi|345006532|ref|YP_004809385.1|	-	0.00019	21.5	1.6	0.0007	19.6	1.6	1.8	1	1	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
DUF1202	PF06717.11	gi|345006532|ref|YP_004809385.1|	-	0.016	14.6	0.1	0.023	14.1	0.1	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1202)
TAT_signal	PF10518.9	gi|345006532|ref|YP_004809385.1|	-	0.027	14.3	2.9	0.027	14.3	2.9	1.7	2	0	0	2	2	2	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
Peptidase_M24	PF00557.24	gi|345006533|ref|YP_004809386.1|	-	2.2e-34	119.0	1.6	2.7e-34	118.7	1.6	1.1	1	0	0	1	1	1	1	Metallopeptidase	family	M24
Creatinase_N	PF01321.18	gi|345006533|ref|YP_004809386.1|	-	1.6e-08	35.3	0.0	3.1e-08	34.3	0.0	1.5	1	0	0	1	1	1	1	Creatinase/Prolidase	N-terminal	domain
Aminotran_3	PF00202.21	gi|345006534|ref|YP_004809387.1|	-	2.3e-53	181.3	0.0	2.9e-53	181.0	0.0	1.1	1	0	0	1	1	1	1	Aminotransferase	class-III
Beta_elim_lyase	PF01212.21	gi|345006534|ref|YP_004809387.1|	-	0.017	14.4	0.0	0.029	13.6	0.0	1.3	1	0	0	1	1	1	0	Beta-eliminating	lyase
Fae	PF08714.11	gi|345006534|ref|YP_004809387.1|	-	0.093	12.7	0.0	0.17	11.9	0.0	1.3	1	0	0	1	1	1	0	Formaldehyde-activating	enzyme	(Fae)
PET	PF06297.14	gi|345006534|ref|YP_004809387.1|	-	0.19	12.0	0.0	0.34	11.3	0.0	1.4	1	0	0	1	1	1	0	PET	Domain
BPD_transp_1	PF00528.22	gi|345006535|ref|YP_004809388.1|	-	6.7e-14	52.0	18.8	6.7e-14	52.0	18.8	2.2	1	1	1	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
DUF3180	PF11377.8	gi|345006535|ref|YP_004809388.1|	-	0.19	11.9	12.3	1.3	9.2	4.4	2.8	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF3180)
BPD_transp_1	PF00528.22	gi|345006536|ref|YP_004809389.1|	-	2.4e-14	53.5	21.0	2.4e-14	53.5	21.0	1.9	1	1	1	2	2	2	2	Binding-protein-dependent	transport	system	inner	membrane	component
ABC_tran	PF00005.27	gi|345006537|ref|YP_004809390.1|	-	5e-34	117.8	0.0	1.1e-33	116.6	0.0	1.6	1	0	0	1	1	1	1	ABC	transporter
TOBE_2	PF08402.10	gi|345006537|ref|YP_004809390.1|	-	8.6e-15	54.7	1.4	2e-14	53.5	0.5	2.1	1	1	1	2	2	2	1	TOBE	domain
AAA_21	PF13304.6	gi|345006537|ref|YP_004809390.1|	-	0.00056	19.8	0.1	0.26	11.0	0.0	2.2	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
TOBE	PF03459.17	gi|345006537|ref|YP_004809390.1|	-	0.0011	19.2	4.7	0.0016	18.7	1.1	2.5	3	0	0	3	3	3	1	TOBE	domain
SMC_N	PF02463.19	gi|345006537|ref|YP_004809390.1|	-	0.0012	18.3	0.0	0.0021	17.5	0.0	1.4	1	0	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA	PF00004.29	gi|345006537|ref|YP_004809390.1|	-	0.0069	16.8	0.2	0.098	13.1	0.2	2.3	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_29	PF13555.6	gi|345006537|ref|YP_004809390.1|	-	0.014	15.1	0.1	0.06	13.1	0.1	1.9	2	0	0	2	2	2	0	P-loop	containing	region	of	AAA	domain
RsgA_GTPase	PF03193.16	gi|345006537|ref|YP_004809390.1|	-	0.014	15.3	0.1	0.054	13.4	0.0	1.9	2	0	0	2	2	2	0	RsgA	GTPase
AAA_22	PF13401.6	gi|345006537|ref|YP_004809390.1|	-	0.016	15.4	0.2	0.11	12.7	0.0	2.2	2	0	0	2	2	2	0	AAA	domain
AAA_16	PF13191.6	gi|345006537|ref|YP_004809390.1|	-	0.053	13.9	0.1	0.099	13.0	0.1	1.6	1	1	0	1	1	1	0	AAA	ATPase	domain
Rad17	PF03215.15	gi|345006537|ref|YP_004809390.1|	-	0.063	13.2	0.0	0.11	12.4	0.0	1.3	1	0	0	1	1	1	0	Rad17	P-loop	domain
AAA_25	PF13481.6	gi|345006537|ref|YP_004809390.1|	-	0.072	12.6	0.3	0.66	9.5	0.1	2.2	2	0	0	2	2	2	0	AAA	domain
Iso_dh	PF00180.20	gi|345006538|ref|YP_004809391.1|	-	3.9e-57	194.0	0.0	5.9e-57	193.4	0.0	1.2	1	0	0	1	1	1	1	Isocitrate/isopropylmalate	dehydrogenase
WLM	PF08325.10	gi|345006538|ref|YP_004809391.1|	-	0.073	13.1	0.2	0.13	12.3	0.2	1.3	1	0	0	1	1	1	0	WLM	domain
GARS_A	PF01071.19	gi|345006539|ref|YP_004809392.1|	-	2.8e-11	43.5	0.0	6e-11	42.5	0.0	1.5	2	0	0	2	2	2	1	Phosphoribosylglycinamide	synthetase,	ATP-grasp	(A)	domain
GARS_C	PF02843.16	gi|345006539|ref|YP_004809392.1|	-	8e-08	32.5	0.0	1.4e-07	31.7	0.0	1.6	1	0	0	1	1	1	1	Phosphoribosylglycinamide	synthetase,	C	domain
DUF45	PF01863.17	gi|345006540|ref|YP_004809393.1|	-	0.015	15.3	2.5	0.038	14.0	1.9	1.7	1	1	1	2	2	2	0	Protein	of	unknown	function	DUF45
SprT-like	PF10263.9	gi|345006540|ref|YP_004809393.1|	-	0.06	13.2	0.1	0.098	12.5	0.1	1.3	1	0	0	1	1	1	0	SprT-like	family
Speriolin_C	PF15059.6	gi|345006540|ref|YP_004809393.1|	-	0.11	12.6	0.0	0.25	11.5	0.0	1.6	1	1	1	2	2	2	0	Speriolin	C-terminus
DAGK_cat	PF00781.24	gi|345006541|ref|YP_004809394.1|	-	1.2e-20	73.3	0.2	2.4e-20	72.4	0.2	1.4	1	0	0	1	1	1	1	Diacylglycerol	kinase	catalytic	domain
NAD_kinase	PF01513.21	gi|345006541|ref|YP_004809394.1|	-	0.14	11.3	0.3	0.25	10.5	0.3	1.3	1	0	0	1	1	1	0	ATP-NAD	kinase
PHP_C	PF13263.6	gi|345006542|ref|YP_004809395.1|	-	1.4e-17	63.2	0.2	1.6e-16	59.8	0.0	2.6	3	0	0	3	3	3	1	PHP-associated
NAD_binding_1	PF00175.21	gi|345006543|ref|YP_004809396.1|	-	1.8e-14	54.3	0.0	6.4e-14	52.5	0.0	1.9	1	1	0	1	1	1	1	Oxidoreductase	NAD-binding	domain
FAD_binding_6	PF00970.24	gi|345006543|ref|YP_004809396.1|	-	7.5e-12	45.5	0.0	1.3e-11	44.7	0.0	1.3	1	0	0	1	1	1	1	Oxidoreductase	FAD-binding	domain
PIG-F	PF06699.11	gi|345006544|ref|YP_004809397.1|	-	0.15	12.2	2.6	0.17	12.0	2.6	1.1	1	0	0	1	1	1	0	GPI	biosynthesis	protein	family	Pig-F
ABC_tran	PF00005.27	gi|345006545|ref|YP_004809398.1|	-	6.1e-32	111.0	0.0	7.8e-32	110.7	0.0	1.1	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|345006545|ref|YP_004809398.1|	-	5e-12	46.2	0.2	1.3e-06	28.4	0.0	2.1	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|345006545|ref|YP_004809398.1|	-	0.00059	19.3	0.1	0.022	14.2	0.0	2.1	2	0	0	2	2	2	1	RecF/RecN/SMC	N	terminal	domain
AAA_29	PF13555.6	gi|345006545|ref|YP_004809398.1|	-	0.0053	16.5	0.1	0.01	15.6	0.1	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_27	PF13514.6	gi|345006545|ref|YP_004809398.1|	-	0.0061	16.2	0.0	0.01	15.4	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
AAA_15	PF13175.6	gi|345006545|ref|YP_004809398.1|	-	0.0094	15.7	0.0	0.23	11.1	0.0	2.1	2	1	0	2	2	2	1	AAA	ATPase	domain
AAA_23	PF13476.6	gi|345006545|ref|YP_004809398.1|	-	0.011	16.3	0.0	0.015	15.8	0.0	1.2	1	0	0	1	1	1	0	AAA	domain
AAA_30	PF13604.6	gi|345006545|ref|YP_004809398.1|	-	0.036	13.8	0.1	0.069	12.9	0.1	1.4	1	0	0	1	1	1	0	AAA	domain
AAA_5	PF07728.14	gi|345006545|ref|YP_004809398.1|	-	0.037	14.0	0.0	0.062	13.3	0.0	1.4	1	0	0	1	1	1	0	AAA	domain	(dynein-related	subfamily)
AAA_22	PF13401.6	gi|345006545|ref|YP_004809398.1|	-	0.052	13.8	0.2	0.44	10.8	0.0	2.0	2	0	0	2	2	2	0	AAA	domain
NB-ARC	PF00931.22	gi|345006545|ref|YP_004809398.1|	-	0.14	11.3	0.1	0.2	10.8	0.1	1.2	1	0	0	1	1	1	0	NB-ARC	domain
AAA_18	PF13238.6	gi|345006545|ref|YP_004809398.1|	-	0.17	12.4	0.0	0.54	10.8	0.0	1.9	2	1	0	2	2	2	0	AAA	domain
SbcCD_C	PF13558.6	gi|345006545|ref|YP_004809398.1|	-	0.25	11.6	2.8	4.4	7.6	2.8	2.3	1	1	0	1	1	1	0	Putative	exonuclease	SbcCD,	C	subunit
AAA_33	PF13671.6	gi|345006545|ref|YP_004809398.1|	-	0.35	11.0	0.8	0.72	10.0	0.1	1.7	2	0	0	2	2	2	0	AAA	domain
ABC_tran	PF00005.27	gi|345006546|ref|YP_004809399.1|	-	2.1e-28	99.6	0.0	2.8e-28	99.2	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|345006546|ref|YP_004809399.1|	-	1.1e-15	58.2	4.3	2e-09	37.7	0.4	2.1	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
BCA_ABC_TP_C	PF12399.8	gi|345006546|ref|YP_004809399.1|	-	2e-09	37.1	0.1	4.9e-09	35.9	0.1	1.6	1	0	0	1	1	1	1	Branched-chain	amino	acid	ATP-binding	cassette	transporter
AAA_23	PF13476.6	gi|345006546|ref|YP_004809399.1|	-	1.2e-07	32.5	0.0	1.4e-07	32.2	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
SMC_N	PF02463.19	gi|345006546|ref|YP_004809399.1|	-	0.00016	21.2	0.1	0.06	12.8	0.1	2.1	2	0	0	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
AAA_29	PF13555.6	gi|345006546|ref|YP_004809399.1|	-	0.0006	19.5	0.3	0.0011	18.7	0.3	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_30	PF13604.6	gi|345006546|ref|YP_004809399.1|	-	0.0045	16.7	0.0	0.007	16.1	0.0	1.4	1	1	0	1	1	1	1	AAA	domain
MukB	PF04310.12	gi|345006546|ref|YP_004809399.1|	-	0.0073	16.1	0.1	0.013	15.3	0.1	1.4	1	0	0	1	1	1	1	MukB	N-terminal
AAA_16	PF13191.6	gi|345006546|ref|YP_004809399.1|	-	0.0087	16.5	0.3	0.013	15.9	0.3	1.5	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_15	PF13175.6	gi|345006546|ref|YP_004809399.1|	-	0.01	15.6	0.0	0.15	11.8	0.0	2.0	2	0	0	2	2	2	0	AAA	ATPase	domain
SRP54	PF00448.22	gi|345006546|ref|YP_004809399.1|	-	0.05	13.2	0.0	0.096	12.3	0.0	1.4	1	0	0	1	1	1	0	SRP54-type	protein,	GTPase	domain
RsgA_GTPase	PF03193.16	gi|345006546|ref|YP_004809399.1|	-	0.099	12.5	0.1	0.22	11.4	0.1	1.5	2	0	0	2	2	2	0	RsgA	GTPase
MMR_HSR1	PF01926.23	gi|345006546|ref|YP_004809399.1|	-	0.11	12.5	0.0	0.24	11.5	0.0	1.6	1	0	0	1	1	1	0	50S	ribosome-binding	GTPase
AAA_22	PF13401.6	gi|345006546|ref|YP_004809399.1|	-	0.11	12.7	0.4	0.22	11.8	0.4	1.7	1	1	0	1	1	1	0	AAA	domain
BPD_transp_2	PF02653.16	gi|345006547|ref|YP_004809400.1|	-	3.7e-51	173.9	42.0	2.8e-49	167.7	42.0	3.0	1	1	0	1	1	1	1	Branched-chain	amino	acid	transport	system	/	permease	component
S1FA	PF04689.13	gi|345006547|ref|YP_004809400.1|	-	3.2	7.9	4.4	1.3	9.2	0.3	2.3	2	0	0	2	2	2	0	DNA	binding	protein	S1FA
BPD_transp_2	PF02653.16	gi|345006548|ref|YP_004809401.1|	-	2.8e-37	128.4	38.5	2.6e-35	121.9	38.5	2.1	1	1	0	1	1	1	1	Branched-chain	amino	acid	transport	system	/	permease	component
MFS_1	PF07690.16	gi|345006549|ref|YP_004809402.1|	-	1.6e-13	50.4	55.8	4.4e-13	48.9	41.1	2.0	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
Hydantoinase_B	PF02538.14	gi|345006550|ref|YP_004809403.1|	-	9.7e-216	717.1	2.3	1.1e-215	716.9	2.3	1.0	1	0	0	1	1	1	1	Hydantoinase	B/oxoprolinase
Hydantoinase_A	PF01968.18	gi|345006551|ref|YP_004809404.1|	-	5.4e-107	357.4	2.7	8.9e-104	346.8	1.0	2.4	2	0	0	2	2	2	2	Hydantoinase/oxoprolinase
Hydant_A_N	PF05378.13	gi|345006551|ref|YP_004809404.1|	-	2.2e-56	190.4	2.6	1.8e-55	187.4	0.0	2.7	3	0	0	3	3	3	1	Hydantoinase/oxoprolinase	N-terminal	region
MutL	PF13941.6	gi|345006551|ref|YP_004809404.1|	-	0.019	13.6	3.7	0.45	9.0	0.5	2.2	2	0	0	2	2	2	0	MutL	protein
Peripla_BP_6	PF13458.6	gi|345006552|ref|YP_004809405.1|	-	3e-49	168.5	8.6	4.7e-49	167.9	8.6	1.3	1	1	0	1	1	1	1	Periplasmic	binding	protein
ANF_receptor	PF01094.28	gi|345006552|ref|YP_004809405.1|	-	1.2e-40	139.7	0.3	1.4e-40	139.5	0.3	1.0	1	0	0	1	1	1	1	Receptor	family	ligand	binding	region
Peripla_BP_5	PF13433.6	gi|345006552|ref|YP_004809405.1|	-	1.2e-15	57.4	1.3	8.3e-15	54.6	1.3	2.1	1	1	0	1	1	1	1	Periplasmic	binding	protein	domain
TAT_signal	PF10518.9	gi|345006552|ref|YP_004809405.1|	-	0.0016	18.2	2.5	0.004	16.9	2.5	1.7	1	0	0	1	1	1	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
RHH_1	PF01402.21	gi|345006553|ref|YP_004809406.1|	-	8.1e-08	31.9	0.9	1.2e-07	31.4	0.1	1.6	2	0	0	2	2	2	1	Ribbon-helix-helix	protein,	copG	family
PSK_trans_fac	PF07704.11	gi|345006553|ref|YP_004809406.1|	-	0.069	13.9	0.0	0.15	12.9	0.0	1.5	1	0	0	1	1	1	0	Rv0623-like	transcription	factor
RHH_3	PF12651.7	gi|345006553|ref|YP_004809406.1|	-	0.14	12.2	0.0	0.35	10.9	0.0	1.7	1	0	0	1	1	1	0	Ribbon-helix-helix	domain
SBP_bac_5	PF00496.22	gi|345006554|ref|YP_004809407.1|	-	1.8e-56	191.7	1.4	2.2e-53	181.6	0.1	2.3	2	0	0	2	2	2	2	Bacterial	extracellular	solute-binding	proteins,	family	5	Middle
BPD_transp_1	PF00528.22	gi|345006555|ref|YP_004809408.1|	-	2.9e-32	111.9	10.6	2.9e-32	111.9	10.6	2.0	2	1	0	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
Glycos_trans_3N	PF02885.17	gi|345006555|ref|YP_004809408.1|	-	0.0019	18.0	0.7	2.2	8.2	0.2	2.5	2	0	0	2	2	2	2	Glycosyl	transferase	family,	helical	bundle	domain
Cation_ATPase_N	PF00690.26	gi|345006555|ref|YP_004809408.1|	-	0.098	12.4	0.2	0.41	10.4	0.0	2.1	2	0	0	2	2	2	0	Cation	transporter/ATPase,	N-terminus
BPD_transp_1	PF00528.22	gi|345006556|ref|YP_004809409.1|	-	8.7e-21	74.5	11.9	1.5e-20	73.7	11.9	1.4	1	0	0	1	1	1	1	Binding-protein-dependent	transport	system	inner	membrane	component
OppC_N	PF12911.7	gi|345006556|ref|YP_004809409.1|	-	0.0026	17.7	0.3	0.016	15.2	0.0	2.6	2	0	0	2	2	2	1	N-terminal	TM	domain	of	oligopeptide	transport	permease	C
DUF3169	PF11368.8	gi|345006556|ref|YP_004809409.1|	-	0.14	11.7	0.5	0.23	10.9	0.5	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3169)
ABC_tran	PF00005.27	gi|345006557|ref|YP_004809410.1|	-	7.9e-61	204.6	0.0	1.2e-31	110.1	0.0	2.3	2	0	0	2	2	2	2	ABC	transporter
oligo_HPY	PF08352.12	gi|345006557|ref|YP_004809410.1|	-	1.1e-36	125.2	0.8	5e-17	62.2	0.1	2.5	2	0	0	2	2	2	2	Oligopeptide/dipeptide	transporter,	C-terminal	region
AAA_22	PF13401.6	gi|345006557|ref|YP_004809410.1|	-	7.8e-08	32.7	0.4	0.043	14.1	0.0	3.7	2	2	0	2	2	2	2	AAA	domain
AAA_21	PF13304.6	gi|345006557|ref|YP_004809410.1|	-	4.2e-07	30.1	3.1	0.14	12.0	0.1	4.0	2	2	1	4	4	4	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|345006557|ref|YP_004809410.1|	-	1.8e-06	27.5	1.4	0.0003	20.3	0.0	2.8	2	1	0	2	2	2	1	RecF/RecN/SMC	N	terminal	domain
AAA_29	PF13555.6	gi|345006557|ref|YP_004809410.1|	-	6.4e-06	25.8	0.5	0.059	13.1	0.1	2.4	2	0	0	2	2	2	2	P-loop	containing	region	of	AAA	domain
AAA_16	PF13191.6	gi|345006557|ref|YP_004809410.1|	-	6.6e-06	26.6	0.0	0.17	12.2	0.0	2.6	2	0	0	2	2	2	2	AAA	ATPase	domain
RsgA_GTPase	PF03193.16	gi|345006557|ref|YP_004809410.1|	-	2.6e-05	24.2	1.0	0.062	13.2	0.1	2.4	2	0	0	2	2	2	2	RsgA	GTPase
AAA	PF00004.29	gi|345006557|ref|YP_004809410.1|	-	3.4e-05	24.3	0.0	0.29	11.6	0.0	2.7	2	0	0	2	2	2	2	ATPase	family	associated	with	various	cellular	activities	(AAA)
PRK	PF00485.18	gi|345006557|ref|YP_004809410.1|	-	8.2e-05	22.4	0.0	0.26	11.0	0.0	2.3	2	0	0	2	2	2	2	Phosphoribulokinase	/	Uridine	kinase	family
AAA_5	PF07728.14	gi|345006557|ref|YP_004809410.1|	-	0.00033	20.6	0.0	0.098	12.7	0.0	2.5	2	0	0	2	2	2	1	AAA	domain	(dynein-related	subfamily)
NB-ARC	PF00931.22	gi|345006557|ref|YP_004809410.1|	-	0.00058	19.1	0.6	0.6	9.3	0.1	2.9	3	0	0	3	3	3	2	NB-ARC	domain
RNA_helicase	PF00910.22	gi|345006557|ref|YP_004809410.1|	-	0.00098	19.5	0.1	2	8.8	0.0	2.5	2	0	0	2	2	2	2	RNA	helicase
IstB_IS21	PF01695.17	gi|345006557|ref|YP_004809410.1|	-	0.0012	18.6	0.6	1.9	8.2	0.0	2.8	3	0	0	3	3	2	2	IstB-like	ATP	binding	protein
AAA_18	PF13238.6	gi|345006557|ref|YP_004809410.1|	-	0.0017	18.9	0.0	1	9.9	0.0	2.9	3	0	0	3	3	2	1	AAA	domain
Sigma54_activat	PF00158.26	gi|345006557|ref|YP_004809410.1|	-	0.0046	16.7	0.3	1.2	8.8	0.1	2.3	2	0	0	2	2	2	1	Sigma-54	interaction	domain
NTPase_1	PF03266.15	gi|345006557|ref|YP_004809410.1|	-	0.0057	16.6	0.5	1.4	8.8	0.0	2.8	3	0	0	3	3	2	1	NTPase
AAA_7	PF12775.7	gi|345006557|ref|YP_004809410.1|	-	0.0089	15.6	0.1	0.67	9.4	0.0	2.3	2	0	0	2	2	2	1	P-loop	containing	dynein	motor	region
NACHT	PF05729.12	gi|345006557|ref|YP_004809410.1|	-	0.013	15.5	1.3	4.7	7.1	0.0	2.6	2	1	0	2	2	2	0	NACHT	domain
Zeta_toxin	PF06414.12	gi|345006557|ref|YP_004809410.1|	-	0.013	14.7	0.2	4.3	6.6	0.0	2.5	2	0	0	2	2	2	0	Zeta	toxin
Rad17	PF03215.15	gi|345006557|ref|YP_004809410.1|	-	0.025	14.5	0.1	1.8	8.4	0.0	2.4	2	0	0	2	2	2	0	Rad17	P-loop	domain
AAA_23	PF13476.6	gi|345006557|ref|YP_004809410.1|	-	0.026	15.0	0.0	5	7.6	0.0	2.3	2	0	0	2	2	2	0	AAA	domain
MMR_HSR1	PF01926.23	gi|345006557|ref|YP_004809410.1|	-	0.03	14.4	0.2	18	5.5	0.0	3.1	3	0	0	3	3	3	0	50S	ribosome-binding	GTPase
ATPase	PF06745.13	gi|345006557|ref|YP_004809410.1|	-	0.056	12.8	0.3	1.5	8.1	0.0	2.4	2	0	0	2	2	2	0	KaiC
AAA_24	PF13479.6	gi|345006557|ref|YP_004809410.1|	-	0.067	12.9	0.0	2.2	7.9	0.0	2.3	2	0	0	2	2	2	0	AAA	domain
AAA_30	PF13604.6	gi|345006557|ref|YP_004809410.1|	-	0.073	12.8	0.3	2.7	7.7	0.1	2.8	2	1	0	2	2	2	0	AAA	domain
TniB	PF05621.11	gi|345006557|ref|YP_004809410.1|	-	0.084	12.3	0.1	7.8	5.9	0.0	3.0	3	0	0	3	3	3	0	Bacterial	TniB	protein
Mg_chelatase	PF01078.21	gi|345006557|ref|YP_004809410.1|	-	0.1	12.0	0.0	5	6.5	0.0	2.6	3	0	0	3	3	3	0	Magnesium	chelatase,	subunit	ChlI
ATPase_2	PF01637.18	gi|345006557|ref|YP_004809410.1|	-	0.14	12.1	0.0	7.3	6.4	0.0	2.3	2	0	0	2	2	2	0	ATPase	domain	predominantly	from	Archaea
MobB	PF03205.14	gi|345006557|ref|YP_004809410.1|	-	0.14	12.1	0.1	10	6.0	0.0	2.5	2	0	0	2	2	2	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
AAA_25	PF13481.6	gi|345006557|ref|YP_004809410.1|	-	0.15	11.6	0.2	19	4.8	0.0	2.8	2	0	0	2	2	2	0	AAA	domain
AAA_33	PF13671.6	gi|345006557|ref|YP_004809410.1|	-	0.7	10.0	5.3	4.2	7.5	0.1	3.1	3	1	0	3	3	3	0	AAA	domain
HpcH_HpaI	PF03328.14	gi|345006558|ref|YP_004809411.1|	-	6e-35	120.4	0.8	8.7e-35	119.8	0.8	1.2	1	0	0	1	1	1	1	HpcH/HpaI	aldolase/citrate	lyase	family
C-C_Bond_Lyase	PF15617.6	gi|345006558|ref|YP_004809411.1|	-	7.9e-11	41.7	0.0	3.3e-06	26.5	0.0	2.2	2	0	0	2	2	2	2	C-C_Bond_Lyase	of	the	TIM-Barrel	fold
ATP-grasp_5	PF13549.6	gi|345006559|ref|YP_004809412.1|	-	2.2e-61	207.2	0.4	3.8e-61	206.4	0.4	1.3	1	0	0	1	1	1	1	ATP-grasp	domain
Succ_CoA_lig	PF13607.6	gi|345006559|ref|YP_004809412.1|	-	2.3e-46	157.0	0.2	4.3e-43	146.4	0.1	3.3	3	0	0	3	3	3	2	Succinyl-CoA	ligase	like	flavodoxin	domain
CoA_binding_2	PF13380.6	gi|345006559|ref|YP_004809412.1|	-	1.1e-21	77.4	2.1	1.6e-20	73.7	0.1	3.6	3	2	0	3	3	3	1	CoA	binding	domain
CoA_binding	PF02629.19	gi|345006559|ref|YP_004809412.1|	-	8.4e-09	36.0	0.1	4.1e-08	33.8	0.0	2.3	3	0	0	3	3	3	1	CoA	binding	domain
CPSase_L_D2	PF02786.17	gi|345006559|ref|YP_004809412.1|	-	0.12	11.9	0.0	0.23	10.9	0.0	1.5	1	0	0	1	1	1	0	Carbamoyl-phosphate	synthase	L	chain,	ATP	binding	domain
HIT	PF01230.23	gi|345006561|ref|YP_004809414.1|	-	9e-23	80.9	0.1	1.1e-22	80.6	0.1	1.1	1	0	0	1	1	1	1	HIT	domain
DcpS_C	PF11969.8	gi|345006561|ref|YP_004809414.1|	-	4.5e-11	43.2	0.0	6e-11	42.8	0.0	1.1	1	0	0	1	1	1	1	Scavenger	mRNA	decapping	enzyme	C-term	binding
CwfJ_C_1	PF04677.15	gi|345006561|ref|YP_004809414.1|	-	0.0037	17.1	0.0	0.0054	16.6	0.0	1.3	1	0	0	1	1	1	1	Protein	similar	to	CwfJ	C-terminus	1
AAA_31	PF13614.6	gi|345006562|ref|YP_004809415.1|	-	1e-07	32.0	0.0	2.3e-07	30.9	0.0	1.6	1	1	0	1	1	1	1	AAA	domain
MipZ	PF09140.11	gi|345006562|ref|YP_004809415.1|	-	9e-06	25.2	1.2	0.028	13.7	0.1	2.2	1	1	1	2	2	2	2	ATPase	MipZ
CBP_BcsQ	PF06564.12	gi|345006562|ref|YP_004809415.1|	-	4.7e-05	23.0	1.0	0.14	11.6	0.9	2.3	2	0	0	2	2	2	2	Cellulose	biosynthesis	protein	BcsQ
CbiA	PF01656.23	gi|345006562|ref|YP_004809415.1|	-	0.0013	18.8	0.0	0.0013	18.8	0.0	1.3	1	1	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
Glyco_transf_4	PF13439.6	gi|345006562|ref|YP_004809415.1|	-	0.011	15.8	0.0	0.064	13.3	0.0	2.0	1	1	0	1	1	1	0	Glycosyltransferase	Family	4
ParA	PF10609.9	gi|345006562|ref|YP_004809415.1|	-	0.011	15.2	0.6	0.19	11.2	0.1	2.1	2	0	0	2	2	2	0	NUBPL	iron-transfer	P-loop	NTPase
VirC1	PF07015.11	gi|345006562|ref|YP_004809415.1|	-	0.31	10.3	1.8	0.42	9.9	0.7	1.6	2	0	0	2	2	2	0	VirC1	protein
TFIIB	PF00382.19	gi|345006564|ref|YP_004809417.1|	-	2.3e-31	107.6	2.7	6e-15	55.0	0.5	2.3	2	0	0	2	2	2	2	Transcription	factor	TFIIB	repeat
TF_Zn_Ribbon	PF08271.12	gi|345006564|ref|YP_004809417.1|	-	6.5e-10	38.4	2.9	1.1e-09	37.6	2.9	1.4	1	0	0	1	1	1	1	TFIIB	zinc-binding
DZR	PF12773.7	gi|345006564|ref|YP_004809417.1|	-	0.05	13.6	1.3	0.17	11.9	0.8	2.0	2	0	0	2	2	2	0	Double	zinc	ribbon
Auto_anti-p27	PF06677.12	gi|345006564|ref|YP_004809417.1|	-	0.078	13.1	2.4	2.8	8.2	1.2	2.4	2	0	0	2	2	2	0	Sjogren's	syndrome/scleroderma	autoantigen	1	(Autoantigen	p27)
AAA_22	PF13401.6	gi|345006564|ref|YP_004809417.1|	-	0.14	12.5	0.3	2.8	8.2	0.3	2.3	1	1	0	1	1	1	0	AAA	domain
Cyclin_N	PF00134.23	gi|345006564|ref|YP_004809417.1|	-	0.16	11.8	0.0	0.27	11.0	0.0	1.3	1	0	0	1	1	1	0	Cyclin,	N-terminal	domain
RB_B	PF01857.20	gi|345006564|ref|YP_004809417.1|	-	0.2	11.7	0.0	0.33	11.0	0.0	1.3	1	0	0	1	1	1	0	Retinoblastoma-associated	protein	B	domain
zf_Rg	PF17915.1	gi|345006564|ref|YP_004809417.1|	-	0.32	10.4	4.8	9.3	5.7	0.3	3.2	2	1	1	3	3	3	0	Reverse	gyrase	zinc	finger
ParA	PF10609.9	gi|345006565|ref|YP_004809418.1|	-	6.8e-12	45.4	2.6	2.7e-06	27.0	0.8	3.1	2	1	0	2	2	2	2	NUBPL	iron-transfer	P-loop	NTPase
CbiA	PF01656.23	gi|345006565|ref|YP_004809418.1|	-	8e-09	35.6	0.0	1.1e-08	35.2	0.0	1.3	1	0	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
AAA_31	PF13614.6	gi|345006565|ref|YP_004809418.1|	-	2e-06	27.9	0.0	2e-05	24.6	0.0	2.1	1	1	0	1	1	1	1	AAA	domain
Fer4_NifH	PF00142.18	gi|345006565|ref|YP_004809418.1|	-	0.00051	19.6	0.0	0.73	9.2	0.0	2.1	2	0	0	2	2	2	2	4Fe-4S	iron	sulfur	cluster	binding	proteins,	NifH/frxC	family
ArsA_ATPase	PF02374.15	gi|345006565|ref|YP_004809418.1|	-	0.006	15.8	0.1	0.076	12.2	0.4	2.0	2	0	0	2	2	2	1	Anion-transporting	ATPase
MipZ	PF09140.11	gi|345006565|ref|YP_004809418.1|	-	0.0092	15.3	1.1	0.045	13.0	1.1	1.9	1	1	0	1	1	1	1	ATPase	MipZ
AAA_33	PF13671.6	gi|345006565|ref|YP_004809418.1|	-	0.0097	16.1	0.0	0.014	15.6	0.0	1.5	1	1	0	1	1	1	1	AAA	domain
AAA_26	PF13500.6	gi|345006565|ref|YP_004809418.1|	-	0.017	14.9	0.2	0.07	12.9	0.0	1.9	2	0	0	2	2	2	0	AAA	domain
CBP_BcsQ	PF06564.12	gi|345006565|ref|YP_004809418.1|	-	0.022	14.3	0.1	0.2	11.1	0.0	2.4	2	1	0	2	2	2	0	Cellulose	biosynthesis	protein	BcsQ
SH3BP5	PF05276.14	gi|345006567|ref|YP_004809420.1|	-	0.0034	17.2	11.2	0.005	16.7	11.2	1.3	1	0	0	1	1	1	1	SH3	domain-binding	protein	5	(SH3BP5)
DASH_Spc19	PF08287.11	gi|345006567|ref|YP_004809420.1|	-	0.038	13.9	9.3	0.06	13.2	9.3	1.3	1	0	0	1	1	1	0	Spc19
GAS	PF13851.6	gi|345006567|ref|YP_004809420.1|	-	0.48	9.7	5.1	0.73	9.2	5.1	1.2	1	0	0	1	1	1	0	Growth-arrest	specific	micro-tubule	binding
DUF2828	PF11443.8	gi|345006567|ref|YP_004809420.1|	-	1.7	6.6	5.5	2.1	6.3	5.5	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF2828)
Spc7	PF08317.11	gi|345006567|ref|YP_004809420.1|	-	2.5	6.9	7.7	6.1	5.6	7.7	1.6	1	1	0	1	1	1	0	Spc7	kinetochore	protein
DUF3584	PF12128.8	gi|345006567|ref|YP_004809420.1|	-	6.5	4.1	16.9	9.4	3.6	16.9	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3584)
Atg14	PF10186.9	gi|345006567|ref|YP_004809420.1|	-	9.8	5.1	7.8	34	3.4	7.8	1.7	1	1	0	1	1	1	0	Vacuolar	sorting	38	and	autophagy-related	subunit	14
DUF835	PF05763.12	gi|345006569|ref|YP_004809422.1|	-	0.00015	21.5	0.0	0.00038	20.2	0.0	1.6	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF835)
Elong_Iki1	PF10483.9	gi|345006569|ref|YP_004809422.1|	-	0.046	13.2	0.0	0.053	13.0	0.0	1.2	1	1	0	1	1	1	0	Elongator	subunit	Iki1
RRP7	PF12923.7	gi|345006570|ref|YP_004809423.1|	-	0.0073	16.4	0.1	0.011	15.9	0.1	1.3	1	1	0	1	1	1	1	Ribosomal	RNA-processing	protein	7	(RRP7)	C-terminal	domain
DUF4350	PF14258.6	gi|345006570|ref|YP_004809423.1|	-	0.11	12.9	0.1	0.19	12.2	0.1	1.5	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4350)
MCM	PF00493.23	gi|345006571|ref|YP_004809424.1|	-	1.8e-84	282.3	0.0	1.1e-63	214.3	0.0	2.2	2	0	0	2	2	2	2	MCM	P-loop	domain
MCM_OB	PF17207.3	gi|345006571|ref|YP_004809424.1|	-	3.3e-36	123.9	0.6	5.7e-36	123.1	0.6	1.4	1	0	0	1	1	1	1	MCM	OB	domain
MCM_lid	PF17855.1	gi|345006571|ref|YP_004809424.1|	-	1.2e-27	96.1	0.8	1.2e-27	96.1	0.8	2.0	2	0	0	2	2	2	1	MCM	AAA-lid	domain
Intein_splicing	PF14890.6	gi|345006571|ref|YP_004809424.1|	-	5.2e-24	84.7	0.0	1.8e-23	83.0	0.0	2.0	2	0	0	2	2	2	1	Intein	splicing	domain
HTH_3	PF01381.22	gi|345006571|ref|YP_004809424.1|	-	2.3e-08	33.9	0.0	5.8e-08	32.7	0.0	1.7	1	0	0	1	1	1	1	Helix-turn-helix
Mg_chelatase	PF01078.21	gi|345006571|ref|YP_004809424.1|	-	3.6e-08	33.0	0.0	1.1e-05	25.0	0.0	2.3	2	0	0	2	2	2	2	Magnesium	chelatase,	subunit	ChlI
HTH_31	PF13560.6	gi|345006571|ref|YP_004809424.1|	-	9.8e-06	25.8	1.4	1.7e-05	25.0	0.1	2.2	2	0	0	2	2	2	1	Helix-turn-helix	domain
MCM_N	PF14551.6	gi|345006571|ref|YP_004809424.1|	-	6e-05	23.6	1.3	6e-05	23.6	1.3	2.4	3	0	0	3	3	3	1	MCM	N-terminal	domain
HTH_19	PF12844.7	gi|345006571|ref|YP_004809424.1|	-	0.016	15.2	0.0	0.062	13.3	0.0	2.1	1	0	0	1	1	1	0	Helix-turn-helix	domain
ESX-1_EspG	PF14011.6	gi|345006572|ref|YP_004809425.1|	-	0.0061	16.2	0.0	0.0061	16.2	0.0	1.1	1	0	0	1	1	1	1	EspG	family
SWIM	PF04434.17	gi|345006573|ref|YP_004809426.1|	-	0.007	16.0	0.2	0.01	15.5	0.2	1.2	1	0	0	1	1	1	1	SWIM	zinc	finger
TRAM	PF01938.20	gi|345006574|ref|YP_004809427.1|	-	7e-09	35.6	0.3	1e-08	35.0	0.3	1.3	1	0	0	1	1	1	1	TRAM	domain
DUF2457	PF10446.9	gi|345006574|ref|YP_004809427.1|	-	0.011	15.0	14.8	0.013	14.7	14.8	1.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2457)
Cwf_Cwc_15	PF04889.12	gi|345006574|ref|YP_004809427.1|	-	0.071	12.8	11.2	0.085	12.6	11.2	1.1	1	0	0	1	1	1	0	Cwf15/Cwc15	cell	cycle	control	protein
CDC45	PF02724.14	gi|345006574|ref|YP_004809427.1|	-	0.12	10.6	7.5	0.14	10.4	7.5	1.0	1	0	0	1	1	1	0	CDC45-like	protein
DUF4746	PF15928.5	gi|345006574|ref|YP_004809427.1|	-	0.18	11.2	4.7	0.19	11.1	4.7	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4746)
TFB6	PF17110.5	gi|345006574|ref|YP_004809427.1|	-	0.32	10.7	4.2	0.42	10.3	4.2	1.2	1	0	0	1	1	1	0	Subunit	11	of	the	general	transcription	factor	TFIIH
Sigma70_ner	PF04546.13	gi|345006574|ref|YP_004809427.1|	-	0.32	10.9	9.4	0.44	10.4	9.4	1.3	1	0	0	1	1	1	0	Sigma-70,	non-essential	region
BUD22	PF09073.10	gi|345006574|ref|YP_004809427.1|	-	0.59	9.4	11.5	0.72	9.1	11.5	1.0	1	0	0	1	1	1	0	BUD22
Nop14	PF04147.12	gi|345006574|ref|YP_004809427.1|	-	0.61	8.2	12.5	0.73	8.0	12.5	1.0	1	0	0	1	1	1	0	Nop14-like	family
RNA_pol_3_Rpc31	PF11705.8	gi|345006574|ref|YP_004809427.1|	-	0.72	10.1	16.2	0.96	9.7	16.2	1.1	1	0	0	1	1	1	0	DNA-directed	RNA	polymerase	III	subunit	Rpc31
PPP4R2	PF09184.11	gi|345006574|ref|YP_004809427.1|	-	0.83	9.2	9.9	1.1	8.8	9.9	1.1	1	0	0	1	1	1	0	PPP4R2
SURF2	PF05477.11	gi|345006574|ref|YP_004809427.1|	-	1.2	8.7	7.3	1.6	8.4	7.3	1.1	1	0	0	1	1	1	0	Surfeit	locus	protein	2	(SURF2)
RPN2_C	PF18004.1	gi|345006574|ref|YP_004809427.1|	-	1.2	9.0	8.0	1.8	8.5	8.0	1.2	1	0	0	1	1	1	0	26S	proteasome	regulatory	subunit	RPN2	C-terminal	domain
CDC27	PF09507.10	gi|345006574|ref|YP_004809427.1|	-	2.2	7.5	10.4	2.9	7.2	10.4	1.1	1	0	0	1	1	1	0	DNA	polymerase	subunit	Cdc27
SspB	PF04386.13	gi|345006574|ref|YP_004809427.1|	-	7.9	6.3	7.5	11	5.9	7.5	1.2	1	0	0	1	1	1	0	Stringent	starvation	protein	B
Roughex	PF06020.11	gi|345006574|ref|YP_004809427.1|	-	8.2	5.4	12.9	10	5.1	12.9	1.1	1	0	0	1	1	1	0	Drosophila	roughex	protein
TFX_C	PF14601.6	gi|345006575|ref|YP_004809428.1|	-	3.9e-31	106.9	0.0	5.6e-31	106.3	0.0	1.2	1	0	0	1	1	1	1	DNA_binding	protein,	TFX,	C-term
Sigma70_r4	PF04545.16	gi|345006575|ref|YP_004809428.1|	-	0.00038	19.9	0.3	0.00072	19.0	0.3	1.4	1	0	0	1	1	1	1	Sigma-70,	region	4
GerE	PF00196.19	gi|345006575|ref|YP_004809428.1|	-	0.0044	16.5	0.1	0.0071	15.9	0.1	1.3	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	luxR	family
HTH_31	PF13560.6	gi|345006575|ref|YP_004809428.1|	-	0.0048	17.2	2.6	0.0048	17.2	2.6	1.8	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_19	PF12844.7	gi|345006575|ref|YP_004809428.1|	-	0.0085	16.1	0.0	0.017	15.1	0.0	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
MarR_2	PF12802.7	gi|345006575|ref|YP_004809428.1|	-	0.022	14.7	0.2	0.053	13.4	0.2	1.6	1	0	0	1	1	1	0	MarR	family
HTH_23	PF13384.6	gi|345006575|ref|YP_004809428.1|	-	0.056	13.3	0.2	0.13	12.1	0.2	1.6	1	0	0	1	1	1	0	Homeodomain-like	domain
HTH_7	PF02796.15	gi|345006575|ref|YP_004809428.1|	-	0.13	12.3	0.1	0.36	10.9	0.0	1.8	2	0	0	2	2	2	0	Helix-turn-helix	domain	of	resolvase
NTP_transferase	PF00483.23	gi|345006576|ref|YP_004809429.1|	-	2.1e-33	115.9	0.0	3.4e-33	115.3	0.0	1.3	1	0	0	1	1	1	1	Nucleotidyl	transferase
NTP_transf_3	PF12804.7	gi|345006576|ref|YP_004809429.1|	-	5.2e-07	30.2	0.1	5.2e-07	30.2	0.1	2.5	2	1	0	2	2	2	1	MobA-like	NTP	transferase	domain
MannoseP_isomer	PF01050.18	gi|345006576|ref|YP_004809429.1|	-	0.0021	17.9	0.2	0.0037	17.2	0.2	1.3	1	0	0	1	1	1	1	Mannose-6-phosphate	isomerase
OrfB_Zn_ribbon	PF07282.11	gi|345006578|ref|YP_004809431.1|	-	4.7e-22	77.7	0.7	3.8e-21	74.8	0.9	2.2	2	0	0	2	2	2	1	Putative	transposase	DNA-binding	domain
OrfB_IS605	PF01385.19	gi|345006578|ref|YP_004809431.1|	-	0.00033	20.9	0.2	0.0011	19.1	0.0	1.9	2	0	0	2	2	2	1	Probable	transposase
C1_2	PF03107.16	gi|345006578|ref|YP_004809431.1|	-	0.00091	19.5	1.1	0.0018	18.6	1.1	1.5	1	0	0	1	1	1	1	C1	domain
zf-HC5HC2H_2	PF13832.6	gi|345006578|ref|YP_004809431.1|	-	0.043	14.0	0.4	0.074	13.2	0.4	1.3	1	0	0	1	1	1	0	PHD-zinc-finger	like	domain
Filo_VP35	PF02097.15	gi|345006578|ref|YP_004809431.1|	-	0.22	10.5	0.0	0.33	10.0	0.0	1.2	1	0	0	1	1	1	0	Filoviridae	VP35
PHD	PF00628.29	gi|345006578|ref|YP_004809431.1|	-	0.22	11.4	3.4	0.17	11.8	1.4	1.8	2	0	0	2	2	2	0	PHD-finger
tRNA_anti-codon	PF01336.25	gi|345006579|ref|YP_004809432.1|	-	0.085	12.9	0.7	0.52	10.3	0.0	2.6	3	1	0	3	3	3	0	OB-fold	nucleic	acid	binding	domain
AAA_3	PF07726.11	gi|345006579|ref|YP_004809432.1|	-	0.12	12.3	0.0	0.22	11.4	0.0	1.5	1	0	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
CSD	PF00313.22	gi|345006581|ref|YP_004809434.1|	-	1.6e-20	72.7	0.1	1.8e-20	72.6	0.1	1.0	1	0	0	1	1	1	1	'Cold-shock'	DNA-binding	domain
S1-like	PF14444.6	gi|345006581|ref|YP_004809434.1|	-	0.023	14.6	3.7	0.058	13.3	3.7	1.7	1	1	0	1	1	1	0	S1-like
Rho_RNA_bind	PF07497.12	gi|345006581|ref|YP_004809434.1|	-	0.029	14.3	0.0	0.032	14.1	0.0	1.1	1	0	0	1	1	1	0	Rho	termination	factor,	RNA-binding	domain
CusF_Ec	PF11604.8	gi|345006581|ref|YP_004809434.1|	-	0.045	13.7	0.0	0.058	13.4	0.0	1.3	1	0	0	1	1	1	0	Copper	binding	periplasmic	protein	CusF
OB_RNB	PF08206.11	gi|345006581|ref|YP_004809434.1|	-	0.19	11.5	2.5	0.28	10.9	2.5	1.4	1	0	0	1	1	1	0	Ribonuclease	B	OB	domain
RHH_1	PF01402.21	gi|345006582|ref|YP_004809435.1|	-	8.2e-06	25.6	0.7	2.3e-05	24.1	0.7	1.8	1	0	0	1	1	1	1	Ribbon-helix-helix	protein,	copG	family
CopG_antitoxin	PF12441.8	gi|345006582|ref|YP_004809435.1|	-	0.0035	17.9	0.0	0.0064	17.0	0.0	1.4	1	0	0	1	1	1	1	CopG	antitoxin	of	type	II	toxin-antitoxin	system
Sec2p	PF06428.11	gi|345006582|ref|YP_004809435.1|	-	0.028	14.4	0.3	0.043	13.8	0.3	1.3	1	0	0	1	1	1	0	GDP/GTP	exchange	factor	Sec2p
CBS	PF00571.28	gi|345006584|ref|YP_004809437.1|	-	1.8e-27	95.5	1.2	1.6e-13	50.9	0.1	2.4	2	0	0	2	2	2	2	CBS	domain
Peptidase_M50	PF02163.22	gi|345006584|ref|YP_004809437.1|	-	2.4e-14	53.2	10.8	7.2e-09	35.3	0.3	2.9	2	1	1	3	3	3	2	Peptidase	family	M50
Peptidase_M50B	PF13398.6	gi|345006584|ref|YP_004809437.1|	-	0.00014	21.6	3.4	0.00014	21.6	3.4	2.0	1	1	1	2	2	2	1	Peptidase	M50B-like
DUF3267	PF11667.8	gi|345006584|ref|YP_004809437.1|	-	0.014	15.7	2.9	0.014	15.7	2.9	2.4	2	0	0	2	2	2	0	Putative	zincin	peptidase
Rubredoxin_C	PF18267.1	gi|345006584|ref|YP_004809437.1|	-	0.12	12.3	0.0	0.24	11.3	0.0	1.4	1	0	0	1	1	1	0	Rubredoxin	NAD+	reductase	C-terminal	domain
DUF1995	PF09353.10	gi|345006584|ref|YP_004809437.1|	-	0.14	12.2	0.1	0.3	11.1	0.1	1.5	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1995)
Peptidase_M64	PF09471.10	gi|345006584|ref|YP_004809437.1|	-	0.2	11.2	0.0	0.3	10.6	0.0	1.2	1	0	0	1	1	1	0	IgA	Peptidase	M64
Cupin_2	PF07883.11	gi|345006585|ref|YP_004809438.1|	-	2.2e-14	52.9	0.7	7.1e-12	44.9	0.7	2.1	1	1	0	1	1	1	1	Cupin	domain
Cupin_1	PF00190.22	gi|345006585|ref|YP_004809438.1|	-	1.4e-09	37.7	0.0	1.9e-09	37.3	0.0	1.2	1	0	0	1	1	1	1	Cupin
AraC_binding	PF02311.19	gi|345006585|ref|YP_004809438.1|	-	0.0021	18.0	0.0	0.0038	17.1	0.0	1.4	1	0	0	1	1	1	1	AraC-like	ligand	binding	domain
Cupin_3	PF05899.12	gi|345006585|ref|YP_004809438.1|	-	0.11	12.2	0.4	0.72	9.6	0.4	2.1	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF861)
PhnA_Zn_Ribbon	PF08274.12	gi|345006586|ref|YP_004809439.1|	-	0.066	13.2	0.7	9.5	6.3	0.1	2.2	2	0	0	2	2	2	0	PhnA	Zinc-Ribbon
DUF1272	PF06906.11	gi|345006586|ref|YP_004809439.1|	-	0.19	11.9	2.2	1.5	8.9	2.2	2.0	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF1272)
UPF0547	PF10571.9	gi|345006586|ref|YP_004809439.1|	-	0.21	11.7	3.0	5.5	7.2	0.2	2.3	2	0	0	2	2	2	0	Uncharacterised	protein	family	UPF0547
DEAD	PF00270.29	gi|345006587|ref|YP_004809440.1|	-	4.2e-21	75.5	0.0	6.6e-21	74.9	0.0	1.3	1	0	0	1	1	1	1	DEAD/DEAH	box	helicase
Helicase_C	PF00271.31	gi|345006587|ref|YP_004809440.1|	-	4.7e-13	49.5	0.0	1.2e-12	48.2	0.0	1.6	1	0	0	1	1	1	1	Helicase	conserved	C-terminal	domain
ResIII	PF04851.15	gi|345006587|ref|YP_004809440.1|	-	1.7e-09	37.9	0.0	2.8e-09	37.2	0.0	1.3	1	0	0	1	1	1	1	Type	III	restriction	enzyme,	res	subunit
CitMHS	PF03600.16	gi|345006588|ref|YP_004809441.1|	-	1.7e-61	208.0	0.6	2.9e-61	207.3	0.2	1.5	1	1	0	1	1	1	1	Citrate	transporter
TrkA_C	PF02080.21	gi|345006588|ref|YP_004809441.1|	-	1.3e-20	73.0	5.1	9.7e-12	44.6	0.4	2.5	2	0	0	2	2	2	2	TrkA-C	domain
ENT	PF03735.14	gi|345006589|ref|YP_004809442.1|	-	0.11	12.5	0.0	0.17	11.9	0.0	1.6	1	1	0	1	1	1	0	ENT	domain
Phage_T4_Gp30_7	PF06919.11	gi|345006589|ref|YP_004809442.1|	-	0.11	12.6	0.0	0.15	12.2	0.0	1.3	1	0	0	1	1	1	0	Phage	Gp30.7	protein
HTH_5	PF01022.20	gi|345006590|ref|YP_004809443.1|	-	0.019	14.8	0.0	0.63	9.9	0.0	2.7	2	1	0	2	2	2	0	Bacterial	regulatory	protein,	arsR	family
HTH_IclR	PF09339.10	gi|345006590|ref|YP_004809443.1|	-	0.033	14.0	0.1	0.33	10.8	0.1	2.4	3	0	0	3	3	3	0	IclR	helix-turn-helix	domain
HTH_24	PF13412.6	gi|345006590|ref|YP_004809443.1|	-	0.047	13.3	0.0	2.3	7.8	0.0	2.8	3	0	0	3	3	3	0	Winged	helix-turn-helix	DNA-binding
Lant_dehydr_N	PF04738.13	gi|345006590|ref|YP_004809443.1|	-	0.052	11.6	0.1	0.052	11.6	0.1	1.1	1	0	0	1	1	1	0	Lantibiotic	dehydratase,	N	terminus
HTH_20	PF12840.7	gi|345006590|ref|YP_004809443.1|	-	0.053	13.6	0.1	0.46	10.6	0.1	2.2	1	1	0	1	1	1	0	Helix-turn-helix	domain
DUF4777	PF16007.5	gi|345006590|ref|YP_004809443.1|	-	0.12	12.7	0.1	0.31	11.3	0.1	1.7	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4777)
HTH_10	PF04967.12	gi|345006591|ref|YP_004809444.1|	-	5.7e-16	58.0	0.0	9.7e-16	57.3	0.0	1.4	1	0	0	1	1	1	1	HTH	DNA	binding	domain
BAT	PF15915.5	gi|345006591|ref|YP_004809444.1|	-	1.3e-12	47.9	0.1	1.9e-12	47.3	0.1	1.3	1	1	0	1	1	1	1	GAF	and	HTH_10	associated	domain
Sigma70_r4	PF04545.16	gi|345006591|ref|YP_004809444.1|	-	1.7e-07	30.6	0.3	3.5e-07	29.7	0.3	1.5	1	0	0	1	1	1	1	Sigma-70,	region	4
Sigma70_r4_2	PF08281.12	gi|345006591|ref|YP_004809444.1|	-	0.0026	17.4	0.1	0.19	11.4	0.0	2.4	2	0	0	2	2	2	1	Sigma-70,	region	4
HTH_AsnC-type	PF13404.6	gi|345006591|ref|YP_004809444.1|	-	0.0026	17.6	0.1	0.0047	16.7	0.1	1.4	1	0	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
MarR_2	PF12802.7	gi|345006591|ref|YP_004809444.1|	-	0.0036	17.1	0.2	0.0092	15.9	0.2	1.7	1	1	0	1	1	1	1	MarR	family
HTH_24	PF13412.6	gi|345006591|ref|YP_004809444.1|	-	0.018	14.6	0.0	0.039	13.5	0.0	1.5	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
HTH_50	PF18024.1	gi|345006591|ref|YP_004809444.1|	-	0.078	12.6	0.0	0.14	11.7	0.0	1.5	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_19	PF12844.7	gi|345006591|ref|YP_004809444.1|	-	0.11	12.6	0.0	9	6.4	0.0	2.5	2	0	0	2	2	2	0	Helix-turn-helix	domain
HTH_3	PF01381.22	gi|345006591|ref|YP_004809444.1|	-	0.14	12.3	0.0	0.82	9.8	0.0	2.1	2	0	0	2	2	2	0	Helix-turn-helix
Bax1-I	PF01027.20	gi|345006592|ref|YP_004809445.1|	-	3.8e-05	23.6	24.9	4.9e-05	23.2	24.9	1.1	1	0	0	1	1	1	1	Inhibitor	of	apoptosis-promoting	Bax1
Phage_holin_2_3	PF16080.5	gi|345006592|ref|YP_004809445.1|	-	5.9	6.7	8.3	0.25	11.1	0.6	2.7	3	0	0	3	3	3	0	Bacteriophage	holin	family	HP1
tRNA_anti-codon	PF01336.25	gi|345006594|ref|YP_004809447.1|	-	3.6e-30	103.8	12.4	7.7e-13	48.2	0.2	4.2	5	0	0	5	5	5	3	OB-fold	nucleic	acid	binding	domain
CDC24_OB3	PF17244.2	gi|345006594|ref|YP_004809447.1|	-	2.4e-11	43.8	0.2	0.00096	18.9	0.0	3.2	3	0	0	3	3	3	3	Cell	division	control	protein	24,	OB	domain	3
REPA_OB_2	PF16900.5	gi|345006594|ref|YP_004809447.1|	-	1e-08	35.0	2.3	0.00024	21.0	0.5	3.2	3	0	0	3	3	3	3	Replication	protein	A	OB	domain
Rep_fac-A_C	PF08646.10	gi|345006594|ref|YP_004809447.1|	-	0.011	15.5	0.0	4.3	7.1	0.0	2.8	3	0	0	3	3	3	0	Replication	factor-A	C	terminal	domain
SSB	PF00436.25	gi|345006594|ref|YP_004809447.1|	-	0.043	13.9	1.2	1.2	9.2	0.0	3.4	4	0	0	4	4	4	0	Single-strand	binding	protein	family
DUF4314	PF14192.6	gi|345006594|ref|YP_004809447.1|	-	0.76	9.7	7.2	3.2	7.7	0.7	3.7	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF4314)
PMT_2	PF13231.6	gi|345006595|ref|YP_004809448.1|	-	4.7e-09	36.6	7.3	4.7e-09	36.6	7.3	2.7	3	0	0	3	3	3	1	Dolichyl-phosphate-mannose-protein	mannosyltransferase
Epimerase	PF01370.21	gi|345006597|ref|YP_004809450.1|	-	4.9e-23	81.8	0.0	6.3e-23	81.5	0.0	1.1	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
3Beta_HSD	PF01073.19	gi|345006597|ref|YP_004809450.1|	-	4.8e-16	58.6	0.0	6.1e-16	58.2	0.0	1.1	1	0	0	1	1	1	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
NAD_binding_10	PF13460.6	gi|345006597|ref|YP_004809450.1|	-	1.3e-13	51.3	0.0	2.1e-13	50.5	0.0	1.4	1	1	0	1	1	1	1	NAD(P)H-binding
Polysacc_synt_2	PF02719.15	gi|345006597|ref|YP_004809450.1|	-	5.4e-13	48.7	0.0	2e-09	37.0	0.0	2.6	2	1	0	2	2	2	2	Polysaccharide	biosynthesis	protein
NAD_binding_4	PF07993.12	gi|345006597|ref|YP_004809450.1|	-	5.8e-12	45.3	0.0	6.6e-11	41.9	0.0	2.0	2	0	0	2	2	2	1	Male	sterility	protein
GDP_Man_Dehyd	PF16363.5	gi|345006597|ref|YP_004809450.1|	-	9.5e-09	35.1	0.0	5.9e-08	32.5	0.0	2.1	2	1	0	2	2	2	1	GDP-mannose	4,6	dehydratase
RmlD_sub_bind	PF04321.17	gi|345006597|ref|YP_004809450.1|	-	4.4e-06	26.0	0.0	8.8e-06	25.0	0.0	1.4	1	1	0	1	1	1	1	RmlD	substrate	binding	domain
NmrA	PF05368.13	gi|345006597|ref|YP_004809450.1|	-	9.5e-05	22.1	0.0	0.00016	21.3	0.0	1.3	1	0	0	1	1	1	1	NmrA-like	family
Sacchrp_dh_NADP	PF03435.18	gi|345006597|ref|YP_004809450.1|	-	0.00017	21.9	0.0	0.00032	20.9	0.0	1.5	1	1	0	1	1	1	1	Saccharopine	dehydrogenase	NADP	binding	domain
TrkA_N	PF02254.18	gi|345006597|ref|YP_004809450.1|	-	0.019	15.2	0.0	0.029	14.6	0.0	1.3	1	0	0	1	1	1	0	TrkA-N	domain
DapB_N	PF01113.20	gi|345006597|ref|YP_004809450.1|	-	0.19	11.9	0.1	0.86	9.7	0.1	2.1	1	1	0	1	1	1	0	Dihydrodipicolinate	reductase,	N-terminus
DHNA	PF04038.12	gi|345006598|ref|YP_004809451.1|	-	1.3e-39	135.0	0.0	1.5e-39	134.9	0.0	1.0	1	0	0	1	1	1	1	Dihydroneopterin	aldolase
UVR	PF02151.19	gi|345006598|ref|YP_004809451.1|	-	0.053	13.3	0.1	0.1	12.4	0.1	1.4	1	0	0	1	1	1	0	UvrB/uvrC	motif
Bep_C_terminal	PF17841.1	gi|345006599|ref|YP_004809452.1|	-	0.04	14.1	0.3	0.074	13.3	0.1	1.6	2	0	0	2	2	2	0	BID	domain	of	Bartonella	effector	protein	(Bep)
AATF-Che1	PF13339.6	gi|345006599|ref|YP_004809452.1|	-	0.13	12.9	0.8	1.3	9.7	0.8	2.1	1	1	0	1	1	1	0	Apoptosis	antagonizing	transcription	factor
Golgin_A5	PF09787.9	gi|345006599|ref|YP_004809452.1|	-	0.2	11.1	3.3	0.19	11.2	2.5	1.4	1	1	0	1	1	1	0	Golgin	subfamily	A	member	5
Spc7	PF08317.11	gi|345006599|ref|YP_004809452.1|	-	0.27	10.1	4.5	0.88	8.4	4.8	1.7	1	1	0	1	1	1	0	Spc7	kinetochore	protein
Creatininase	PF02633.14	gi|345006600|ref|YP_004809453.1|	-	3.6e-68	229.6	1.3	4e-68	229.5	1.3	1.0	1	0	0	1	1	1	1	Creatinine	amidohydrolase
ABC_membrane	PF00664.23	gi|345006601|ref|YP_004809454.1|	-	4.8e-39	134.7	1.5	6.1e-39	134.3	1.5	1.1	1	0	0	1	1	1	1	ABC	transporter	transmembrane	region
ABC_tran	PF00005.27	gi|345006601|ref|YP_004809454.1|	-	4.7e-35	121.1	0.0	8e-35	120.3	0.0	1.4	1	0	0	1	1	1	1	ABC	transporter
AAA_22	PF13401.6	gi|345006601|ref|YP_004809454.1|	-	8.5e-05	22.8	0.2	0.00056	20.2	0.1	2.3	2	1	0	2	2	1	1	AAA	domain
RsgA_GTPase	PF03193.16	gi|345006601|ref|YP_004809454.1|	-	0.0005	20.0	0.0	0.00093	19.1	0.0	1.4	1	0	0	1	1	1	1	RsgA	GTPase
Zeta_toxin	PF06414.12	gi|345006601|ref|YP_004809454.1|	-	0.00065	19.0	0.0	0.0015	17.9	0.0	1.5	1	0	0	1	1	1	1	Zeta	toxin
AAA_21	PF13304.6	gi|345006601|ref|YP_004809454.1|	-	0.00086	19.2	0.0	0.0023	17.8	0.0	1.7	1	0	0	1	1	1	1	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|345006601|ref|YP_004809454.1|	-	0.0021	17.6	1.0	0.085	12.3	1.0	2.2	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_23	PF13476.6	gi|345006601|ref|YP_004809454.1|	-	0.003	18.1	0.1	0.0064	17.0	0.1	1.5	1	0	0	1	1	1	1	AAA	domain
AAA_33	PF13671.6	gi|345006601|ref|YP_004809454.1|	-	0.0034	17.5	0.0	0.01	16.0	0.0	1.7	1	0	0	1	1	1	1	AAA	domain
AAA_24	PF13479.6	gi|345006601|ref|YP_004809454.1|	-	0.0051	16.6	0.0	0.009	15.8	0.0	1.4	1	0	0	1	1	1	1	AAA	domain
AAA_29	PF13555.6	gi|345006601|ref|YP_004809454.1|	-	0.0053	16.5	0.1	0.013	15.2	0.1	1.6	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_16	PF13191.6	gi|345006601|ref|YP_004809454.1|	-	0.0069	16.8	0.3	0.02	15.3	0.3	1.8	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA	PF00004.29	gi|345006601|ref|YP_004809454.1|	-	0.025	15.0	0.1	0.29	11.6	0.1	2.3	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_18	PF13238.6	gi|345006601|ref|YP_004809454.1|	-	0.027	15.0	0.0	0.067	13.7	0.0	1.8	1	0	0	1	1	1	0	AAA	domain
AAA_30	PF13604.6	gi|345006601|ref|YP_004809454.1|	-	0.03	14.1	0.6	0.094	12.4	0.6	1.8	1	1	0	1	1	1	0	AAA	domain
MMR_HSR1	PF01926.23	gi|345006601|ref|YP_004809454.1|	-	0.077	13.1	0.0	0.19	11.8	0.0	1.7	1	0	0	1	1	1	0	50S	ribosome-binding	GTPase
AAA_15	PF13175.6	gi|345006601|ref|YP_004809454.1|	-	0.11	12.2	0.0	0.19	11.4	0.0	1.3	1	0	0	1	1	1	0	AAA	ATPase	domain
AAA_5	PF07728.14	gi|345006601|ref|YP_004809454.1|	-	0.11	12.4	0.1	0.87	9.6	0.0	2.2	2	0	0	2	2	2	0	AAA	domain	(dynein-related	subfamily)
Guanylate_kin	PF00625.21	gi|345006601|ref|YP_004809454.1|	-	0.13	12.0	0.0	0.52	10.0	0.0	1.9	1	1	0	1	1	1	0	Guanylate	kinase
DUF192	PF02643.15	gi|345006603|ref|YP_004809456.1|	-	4.2e-26	90.9	0.0	5.7e-26	90.5	0.0	1.2	1	0	0	1	1	1	1	Uncharacterized	ACR,	COG1430
DUF4926	PF16277.5	gi|345006603|ref|YP_004809456.1|	-	0.15	11.5	1.0	2.9	7.3	1.0	2.6	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4926)
HalOD1	PF18545.1	gi|345006604|ref|YP_004809457.1|	-	1.9e-20	72.9	1.8	2.9e-20	72.3	1.8	1.3	1	0	0	1	1	1	1	Halobacterial	output	domain	1
DUF2270	PF10028.9	gi|345006605|ref|YP_004809458.1|	-	8.9e-73	243.8	2.2	1e-72	243.6	2.2	1.0	1	0	0	1	1	1	1	Predicted	integral	membrane	protein	(DUF2270)
Acyl_transf_3	PF01757.22	gi|345006605|ref|YP_004809458.1|	-	0.1	11.6	1.2	3	6.8	0.1	2.2	2	1	0	2	2	2	0	Acyltransferase	family
DUF302	PF03625.14	gi|345006606|ref|YP_004809459.1|	-	2.6e-25	88.1	0.0	4.3e-25	87.4	0.0	1.4	1	0	0	1	1	1	1	Domain	of	unknown	function	DUF302
DrsE_2	PF13686.6	gi|345006607|ref|YP_004809460.1|	-	1.9e-50	170.8	0.1	2.5e-50	170.4	0.1	1.1	1	0	0	1	1	1	1	DsrE/DsrF/DrsH-like	family
DrsE	PF02635.15	gi|345006607|ref|YP_004809460.1|	-	8.4e-08	32.6	0.0	5e-07	30.1	0.0	2.0	1	1	0	1	1	1	1	DsrE/DsrF-like	family
TusA	PF01206.17	gi|345006608|ref|YP_004809461.1|	-	2.6e-20	72.0	0.0	2.9e-20	71.8	0.0	1.0	1	0	0	1	1	1	1	Sulfurtransferase	TusA
Lactamase_B	PF00753.27	gi|345006609|ref|YP_004809462.1|	-	1.2e-15	58.1	5.5	2.3e-15	57.1	5.5	1.5	1	0	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Rhodanese	PF00581.20	gi|345006609|ref|YP_004809462.1|	-	2e-09	37.9	0.0	3.8e-09	37.0	0.0	1.5	1	0	0	1	1	1	1	Rhodanese-like	domain
Lactamase_B_2	PF12706.7	gi|345006609|ref|YP_004809462.1|	-	0.032	13.8	0.2	0.056	12.9	0.2	1.4	1	0	0	1	1	1	0	Beta-lactamase	superfamily	domain
LisH_2	PF16045.5	gi|345006609|ref|YP_004809462.1|	-	0.098	11.7	0.0	0.21	10.7	0.0	1.6	1	0	0	1	1	1	0	LisH
LD_cluster2	PF18163.1	gi|345006609|ref|YP_004809462.1|	-	0.1	12.1	0.0	3.1	7.2	0.0	2.1	2	0	0	2	2	2	0	SLOG	cluster2
Sulf_transp	PF04143.14	gi|345006610|ref|YP_004809463.1|	-	3.3e-11	43.3	13.7	4.4e-11	42.9	13.7	1.1	1	0	0	1	1	1	1	Sulphur	transport
Fumarate_red_D	PF02313.17	gi|345006610|ref|YP_004809463.1|	-	3.1	7.9	6.2	5.7	7.1	1.8	2.3	2	1	0	2	2	2	0	Fumarate	reductase	subunit	D
Sulf_transp	PF04143.14	gi|345006611|ref|YP_004809464.1|	-	0.00013	21.6	11.2	0.00013	21.6	11.2	2.0	1	1	1	2	2	2	2	Sulphur	transport
TrmB	PF01978.19	gi|345006612|ref|YP_004809465.1|	-	2e-11	43.6	0.0	3.2e-11	42.9	0.0	1.4	1	1	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_IclR	PF09339.10	gi|345006612|ref|YP_004809465.1|	-	1.7e-07	30.9	0.1	3.1e-07	30.1	0.1	1.4	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
HTH_20	PF12840.7	gi|345006612|ref|YP_004809465.1|	-	1.2e-05	25.3	0.1	5.2e-05	23.2	0.0	1.8	2	0	0	2	2	2	1	Helix-turn-helix	domain
Penicillinase_R	PF03965.16	gi|345006612|ref|YP_004809465.1|	-	1.5e-05	25.3	0.0	1.9e-05	25.0	0.0	1.1	1	0	0	1	1	1	1	Penicillinase	repressor
HTH_11	PF08279.12	gi|345006612|ref|YP_004809465.1|	-	6.4e-05	22.8	0.0	9.9e-05	22.2	0.0	1.3	1	0	0	1	1	1	1	HTH	domain
MarR_2	PF12802.7	gi|345006612|ref|YP_004809465.1|	-	0.00035	20.4	0.3	0.00081	19.2	0.1	1.7	2	0	0	2	2	2	1	MarR	family
HTH_24	PF13412.6	gi|345006612|ref|YP_004809465.1|	-	0.005	16.4	0.0	0.0078	15.8	0.0	1.3	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
DUF4777	PF16007.5	gi|345006612|ref|YP_004809465.1|	-	0.0051	17.0	0.1	0.019	15.2	0.1	2.0	1	1	0	1	1	1	1	Domain	of	unknown	function	(DUF4777)
MarR	PF01047.22	gi|345006612|ref|YP_004809465.1|	-	0.01	15.8	0.0	0.024	14.6	0.0	1.6	2	0	0	2	2	2	0	MarR	family
HTH_5	PF01022.20	gi|345006612|ref|YP_004809465.1|	-	0.038	13.9	0.0	0.086	12.7	0.0	1.6	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
Dimerisation2	PF16864.5	gi|345006612|ref|YP_004809465.1|	-	0.048	13.6	0.0	0.086	12.8	0.0	1.4	1	1	0	1	1	1	0	Dimerisation	domain
DUF2080	PF09853.9	gi|345006613|ref|YP_004809466.1|	-	2.7e-05	23.8	0.0	3.1e-05	23.6	0.0	1.1	1	0	0	1	1	1	1	Putative	transposon-encoded	protein	(DUF2080)
Calci_bind_CcbP	PF11535.8	gi|345006614|ref|YP_004809467.1|	-	5.2e-40	136.2	1.2	6e-40	136.0	1.2	1.0	1	0	0	1	1	1	1	Calcium	binding
PRiA4_ORF3	PF07929.11	gi|345006615|ref|YP_004809468.1|	-	0.00069	19.4	0.0	0.00097	18.9	0.0	1.2	1	0	0	1	1	1	1	Plasmid	pRiA4b	ORF-3-like	protein
zf-C2H2	PF00096.26	gi|345006616|ref|YP_004809469.1|	-	0.0028	18.0	0.2	0.0063	16.9	0.2	1.6	1	0	0	1	1	1	1	Zinc	finger,	C2H2	type
zf-C2H2_4	PF13894.6	gi|345006616|ref|YP_004809469.1|	-	0.048	14.5	0.7	0.092	13.6	0.7	1.5	1	0	0	1	1	1	0	C2H2-type	zinc	finger
Zn-ribbon_8	PF09723.10	gi|345006616|ref|YP_004809469.1|	-	0.16	12.1	0.1	0.28	11.3	0.1	1.4	1	0	0	1	1	1	0	Zinc	ribbon	domain
SWIM	PF04434.17	gi|345006617|ref|YP_004809470.1|	-	0.00026	20.6	0.1	0.00049	19.7	0.1	1.4	1	0	0	1	1	1	1	SWIM	zinc	finger
Importin_rep_6	PF18829.1	gi|345006617|ref|YP_004809470.1|	-	0.16	12.1	2.2	3.6	7.8	0.2	2.5	1	1	1	2	2	2	0	Importin	repeat	6
OrfB_Zn_ribbon	PF07282.11	gi|345006618|ref|YP_004809471.1|	-	1.1e-21	76.5	0.3	2.4e-21	75.4	0.3	1.6	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
OrfB_IS605	PF01385.19	gi|345006618|ref|YP_004809471.1|	-	4.2e-20	72.2	0.3	9.7e-20	71.0	0.3	1.5	1	0	0	1	1	1	1	Probable	transposase
HTH_OrfB_IS605	PF12323.8	gi|345006618|ref|YP_004809471.1|	-	0.00055	19.4	0.1	0.0015	18.0	0.1	1.7	1	0	0	1	1	1	1	Helix-turn-helix	domain
DUF3445	PF11927.8	gi|345006618|ref|YP_004809471.1|	-	0.062	12.9	0.2	0.11	12.1	0.2	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3445)
DUF1451	PF07295.11	gi|345006618|ref|YP_004809471.1|	-	0.14	12.1	1.9	0.31	11.1	1.9	1.6	1	0	0	1	1	1	0	Zinc-ribbon	containing	domain
Cupin_2	PF07883.11	gi|345006619|ref|YP_004809472.1|	-	4.2e-16	58.4	0.0	6.3e-16	57.9	0.0	1.3	1	0	0	1	1	1	1	Cupin	domain
Cupin_3	PF05899.12	gi|345006619|ref|YP_004809472.1|	-	3.2e-05	23.5	0.0	5.7e-05	22.7	0.0	1.4	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF861)
AraC_binding	PF02311.19	gi|345006619|ref|YP_004809472.1|	-	0.015	15.2	0.1	0.023	14.6	0.1	1.2	1	0	0	1	1	1	0	AraC-like	ligand	binding	domain
Cupin_1	PF00190.22	gi|345006619|ref|YP_004809472.1|	-	0.037	13.6	0.0	0.055	13.1	0.0	1.3	1	0	0	1	1	1	0	Cupin
GFO_IDH_MocA	PF01408.22	gi|345006620|ref|YP_004809473.1|	-	2e-20	73.8	0.2	3e-20	73.2	0.2	1.3	1	0	0	1	1	1	1	Oxidoreductase	family,	NAD-binding	Rossmann	fold
GFO_IDH_MocA_C	PF02894.17	gi|345006620|ref|YP_004809473.1|	-	3.7e-05	23.7	0.0	8.3e-05	22.6	0.0	1.5	1	0	0	1	1	1	1	Oxidoreductase	family,	C-terminal	alpha/beta	domain
Sacchrp_dh_NADP	PF03435.18	gi|345006620|ref|YP_004809473.1|	-	0.013	15.7	0.1	0.025	14.8	0.1	1.5	1	0	0	1	1	1	0	Saccharopine	dehydrogenase	NADP	binding	domain
Semialdhyde_dh	PF01118.24	gi|345006620|ref|YP_004809473.1|	-	0.019	15.4	0.0	0.039	14.4	0.0	1.5	1	0	0	1	1	1	0	Semialdehyde	dehydrogenase,	NAD	binding	domain
CN_hydrolase	PF00795.22	gi|345006621|ref|YP_004809474.1|	-	3.1e-45	154.5	0.0	3.6e-45	154.4	0.0	1.0	1	0	0	1	1	1	1	Carbon-nitrogen	hydrolase
Polyketide_cyc2	PF10604.9	gi|345006622|ref|YP_004809475.1|	-	9.6e-19	68.1	2.5	1.1e-18	67.9	2.5	1.0	1	0	0	1	1	1	1	Polyketide	cyclase	/	dehydrase	and	lipid	transport
COXG	PF06240.13	gi|345006622|ref|YP_004809475.1|	-	1.7e-07	31.0	0.0	3.2e-07	30.2	0.0	1.4	1	1	1	2	2	2	1	Carbon	monoxide	dehydrogenase	subunit	G	(CoxG)
Polyketide_cyc	PF03364.20	gi|345006622|ref|YP_004809475.1|	-	0.00048	20.3	0.1	0.00059	20.0	0.1	1.1	1	0	0	1	1	1	1	Polyketide	cyclase	/	dehydrase	and	lipid	transport
DUF2505	PF10698.9	gi|345006622|ref|YP_004809475.1|	-	0.0014	18.8	1.9	0.14	12.3	1.8	2.6	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF2505)
FaeA	PF04703.12	gi|345006623|ref|YP_004809476.1|	-	0.018	15.4	0.0	0.021	15.2	0.0	1.2	1	0	0	1	1	1	0	FaeA-like	protein
Put_DNA-bind_N	PF06971.13	gi|345006623|ref|YP_004809476.1|	-	0.021	14.8	0.0	0.035	14.1	0.0	1.4	1	0	0	1	1	1	0	Putative	DNA-binding	protein	N-terminus
nec1	PF10379.9	gi|345006624|ref|YP_004809477.1|	-	0.15	11.5	1.2	0.16	11.5	1.2	1.1	1	0	0	1	1	1	0	Virulence	protein	nec1
NUDIX	PF00293.28	gi|345006625|ref|YP_004809478.1|	-	4.6e-13	49.3	0.0	6.7e-13	48.8	0.0	1.3	1	0	0	1	1	1	1	NUDIX	domain
Asn_synthase	PF00733.21	gi|345006626|ref|YP_004809479.1|	-	8.4e-30	104.6	2.2	6.7e-18	65.5	0.2	2.1	1	1	1	2	2	2	2	Asparagine	synthase
NAD_synthase	PF02540.17	gi|345006626|ref|YP_004809479.1|	-	0.069	12.2	0.0	0.12	11.5	0.0	1.3	1	0	0	1	1	1	0	NAD	synthase
PHP_C	PF13263.6	gi|345006627|ref|YP_004809480.1|	-	2.9e-21	75.0	2.3	7.9e-21	73.6	0.9	2.2	2	0	0	2	2	2	1	PHP-associated
PHP	PF02811.19	gi|345006627|ref|YP_004809480.1|	-	1.1e-09	38.9	0.3	1.3e-09	38.5	0.3	1.3	1	1	0	1	1	1	1	PHP	domain
AIRS	PF00586.24	gi|345006628|ref|YP_004809481.1|	-	1.3e-38	131.5	13.2	2.4e-22	79.4	0.4	3.2	4	0	0	4	4	4	2	AIR	synthase	related	protein,	N-terminal	domain
AIRS_C	PF02769.22	gi|345006628|ref|YP_004809481.1|	-	4.2e-35	121.2	8.4	3.5e-29	102.0	1.1	2.4	2	0	0	2	2	2	2	AIR	synthase	related	protein,	C-terminal	domain
FGAR-AT_linker	PF18072.1	gi|345006628|ref|YP_004809481.1|	-	2.3e-06	28.0	0.1	5.7e-06	26.8	0.1	1.8	1	0	0	1	1	1	1	Formylglycinamide	ribonucleotide	amidotransferase	linker	domain
AAA	PF00004.29	gi|345006630|ref|YP_004809483.1|	-	5.2e-92	305.2	0.0	9.4e-47	158.7	0.0	2.5	2	0	0	2	2	2	2	ATPase	family	associated	with	various	cellular	activities	(AAA)
CDC48_N	PF02359.18	gi|345006630|ref|YP_004809483.1|	-	8.1e-22	77.2	0.3	4.5e-21	74.8	0.2	2.3	2	0	0	2	2	1	1	Cell	division	protein	48	(CDC48),	N-terminal	domain
AAA_lid_3	PF17862.1	gi|345006630|ref|YP_004809483.1|	-	6.1e-20	70.8	9.6	2.1e-12	46.6	0.5	2.7	2	0	0	2	2	2	2	AAA+	lid	domain
RuvB_N	PF05496.12	gi|345006630|ref|YP_004809483.1|	-	4.6e-13	49.2	0.1	1.2e-05	25.1	0.0	3.3	5	0	0	5	5	2	2	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
AAA_16	PF13191.6	gi|345006630|ref|YP_004809483.1|	-	7.8e-12	45.9	7.5	1e-05	26.0	0.0	4.6	2	2	0	2	2	2	2	AAA	ATPase	domain
AAA_2	PF07724.14	gi|345006630|ref|YP_004809483.1|	-	6.8e-11	42.6	0.0	2.8e-06	27.6	0.0	2.6	2	0	0	2	2	2	2	AAA	domain	(Cdc48	subfamily)
AAA_33	PF13671.6	gi|345006630|ref|YP_004809483.1|	-	9.7e-11	42.0	0.0	0.00092	19.4	0.0	3.1	2	1	0	2	2	2	2	AAA	domain
AAA_5	PF07728.14	gi|345006630|ref|YP_004809483.1|	-	6.4e-10	39.2	0.0	0.00018	21.5	0.0	3.4	2	1	0	2	2	2	2	AAA	domain	(dynein-related	subfamily)
TIP49	PF06068.13	gi|345006630|ref|YP_004809483.1|	-	1.4e-09	37.6	0.0	0.00023	20.5	0.0	2.4	2	0	0	2	2	2	2	TIP49	P-loop	domain
AAA_22	PF13401.6	gi|345006630|ref|YP_004809483.1|	-	2.3e-08	34.4	0.7	0.0035	17.6	0.0	3.8	2	2	1	3	3	3	2	AAA	domain
CDC48_2	PF02933.17	gi|345006630|ref|YP_004809483.1|	-	5e-07	29.4	0.2	1.5e-06	27.9	0.2	1.7	1	0	0	1	1	1	1	Cell	division	protein	48	(CDC48),	domain	2
AAA_14	PF13173.6	gi|345006630|ref|YP_004809483.1|	-	8.4e-07	29.1	0.0	0.0035	17.4	0.0	2.3	2	0	0	2	2	2	2	AAA	domain
AAA_28	PF13521.6	gi|345006630|ref|YP_004809483.1|	-	3.2e-06	27.5	0.0	0.093	13.0	0.0	2.9	2	0	0	2	2	2	2	AAA	domain
TsaE	PF02367.17	gi|345006630|ref|YP_004809483.1|	-	4e-06	26.8	0.0	0.066	13.2	0.0	2.3	2	0	0	2	2	2	2	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
Zeta_toxin	PF06414.12	gi|345006630|ref|YP_004809483.1|	-	4.2e-06	26.2	0.4	0.12	11.6	0.0	3.2	3	0	0	3	3	3	2	Zeta	toxin
Sigma54_activat	PF00158.26	gi|345006630|ref|YP_004809483.1|	-	8.3e-06	25.6	0.0	0.25	11.1	0.0	3.2	4	0	0	4	4	2	2	Sigma-54	interaction	domain
AAA_3	PF07726.11	gi|345006630|ref|YP_004809483.1|	-	8.4e-06	25.7	0.0	0.079	12.8	0.0	2.7	2	0	0	2	2	2	2	ATPase	family	associated	with	various	cellular	activities	(AAA)
Mg_chelatase	PF01078.21	gi|345006630|ref|YP_004809483.1|	-	9.1e-06	25.2	0.6	0.089	12.2	0.0	2.4	2	0	0	2	2	2	2	Magnesium	chelatase,	subunit	ChlI
IstB_IS21	PF01695.17	gi|345006630|ref|YP_004809483.1|	-	1.3e-05	25.0	0.2	0.1	12.3	0.0	2.4	2	0	0	2	2	2	2	IstB-like	ATP	binding	protein
RNA_helicase	PF00910.22	gi|345006630|ref|YP_004809483.1|	-	3.3e-05	24.2	0.0	0.066	13.6	0.0	2.4	2	0	0	2	2	2	2	RNA	helicase
AAA_18	PF13238.6	gi|345006630|ref|YP_004809483.1|	-	4.1e-05	24.1	0.0	0.37	11.3	0.0	2.8	2	0	0	2	2	2	2	AAA	domain
DUF2075	PF09848.9	gi|345006630|ref|YP_004809483.1|	-	4.5e-05	22.9	0.0	0.12	11.6	0.0	2.2	2	0	0	2	2	2	2	Uncharacterized	conserved	protein	(DUF2075)
ABC_tran	PF00005.27	gi|345006630|ref|YP_004809483.1|	-	7.8e-05	23.2	0.0	0.25	11.9	0.0	2.5	2	0	0	2	2	2	2	ABC	transporter
AAA_7	PF12775.7	gi|345006630|ref|YP_004809483.1|	-	8.9e-05	22.1	0.0	0.021	14.3	0.0	2.3	2	0	0	2	2	2	1	P-loop	containing	dynein	motor	region
AAA_19	PF13245.6	gi|345006630|ref|YP_004809483.1|	-	0.00019	21.8	0.0	0.89	9.9	0.0	2.5	2	0	0	2	2	2	2	AAA	domain
AAA_11	PF13086.6	gi|345006630|ref|YP_004809483.1|	-	0.00022	21.1	0.0	0.26	11.1	0.0	2.3	2	0	0	2	2	2	2	AAA	domain
AAA_30	PF13604.6	gi|345006630|ref|YP_004809483.1|	-	0.00025	20.8	0.2	0.48	10.1	0.0	3.1	2	0	0	2	2	2	1	AAA	domain
DUF815	PF05673.13	gi|345006630|ref|YP_004809483.1|	-	0.00056	19.2	0.0	0.54	9.4	0.0	2.3	2	0	0	2	2	2	2	Protein	of	unknown	function	(DUF815)
Parvo_NS1	PF01057.17	gi|345006630|ref|YP_004809483.1|	-	0.00068	18.8	0.2	0.44	9.6	0.0	2.2	2	0	0	2	2	2	2	Parvovirus	non-structural	protein	NS1
NB-ARC	PF00931.22	gi|345006630|ref|YP_004809483.1|	-	0.00071	18.8	0.1	0.41	9.8	0.0	2.3	2	0	0	2	2	2	1	NB-ARC	domain
ATPase	PF06745.13	gi|345006630|ref|YP_004809483.1|	-	0.00074	18.9	0.1	0.93	8.8	0.0	2.5	2	0	0	2	2	2	2	KaiC
Hydin_ADK	PF17213.3	gi|345006630|ref|YP_004809483.1|	-	0.00075	19.8	0.0	0.12	12.6	0.0	2.4	2	0	0	2	2	2	1	Hydin	Adenylate	kinase-like	domain
CPT	PF07931.12	gi|345006630|ref|YP_004809483.1|	-	0.00083	19.2	0.0	1.2	8.9	0.0	2.6	2	0	0	2	2	2	2	Chloramphenicol	phosphotransferase-like	protein
NACHT	PF05729.12	gi|345006630|ref|YP_004809483.1|	-	0.00096	19.1	1.4	0.83	9.6	0.3	2.9	3	0	0	3	3	2	1	NACHT	domain
PhoH	PF02562.16	gi|345006630|ref|YP_004809483.1|	-	0.0015	18.0	0.6	0.99	8.8	0.0	2.3	2	0	0	2	2	2	2	PhoH-like	protein
Torsin	PF06309.11	gi|345006630|ref|YP_004809483.1|	-	0.0021	18.2	0.0	3.6	7.7	0.0	2.5	2	0	0	2	2	2	0	Torsin
Sigma54_activ_2	PF14532.6	gi|345006630|ref|YP_004809483.1|	-	0.0022	18.1	0.0	3.7	7.7	0.0	2.6	3	0	0	3	3	2	0	Sigma-54	interaction	domain
AAA_24	PF13479.6	gi|345006630|ref|YP_004809483.1|	-	0.0054	16.5	0.1	2.1	8.0	0.0	2.3	2	0	0	2	2	2	1	AAA	domain
AAA_17	PF13207.6	gi|345006630|ref|YP_004809483.1|	-	0.0077	16.7	0.0	0.95	9.9	0.0	2.6	2	0	0	2	2	2	1	AAA	domain
Viral_helicase1	PF01443.18	gi|345006630|ref|YP_004809483.1|	-	0.0078	16.0	0.0	3.3	7.4	0.0	2.2	2	0	0	2	2	2	1	Viral	(Superfamily	1)	RNA	helicase
AAA_25	PF13481.6	gi|345006630|ref|YP_004809483.1|	-	0.023	14.3	11.1	4.1	6.9	0.2	5.2	3	2	1	5	5	5	0	AAA	domain
NTPase_1	PF03266.15	gi|345006630|ref|YP_004809483.1|	-	0.046	13.6	0.1	1.8	8.4	0.0	2.6	2	0	0	2	2	2	0	NTPase
Cytidylate_kin	PF02224.18	gi|345006630|ref|YP_004809483.1|	-	0.067	12.9	0.3	1.3	8.7	0.0	2.4	2	0	0	2	2	2	0	Cytidylate	kinase
TrkA_C	PF02080.21	gi|345006630|ref|YP_004809483.1|	-	0.069	13.0	0.1	0.46	10.3	0.0	2.5	3	0	0	3	3	1	0	TrkA-C	domain
AFG1_ATPase	PF03969.16	gi|345006630|ref|YP_004809483.1|	-	0.11	11.3	0.0	9.2	5.0	0.0	2.2	2	0	0	2	2	2	0	AFG1-like	ATPase
SKI	PF01202.22	gi|345006630|ref|YP_004809483.1|	-	0.12	12.5	0.0	12	6.0	0.0	2.7	2	0	0	2	2	2	0	Shikimate	kinase
Cytidylate_kin2	PF13189.6	gi|345006630|ref|YP_004809483.1|	-	0.14	12.3	0.0	6.7	6.8	0.0	2.5	2	0	0	2	2	2	0	Cytidylate	kinase-like	family
Zot	PF05707.12	gi|345006630|ref|YP_004809483.1|	-	0.23	11.1	0.0	3.4	7.3	0.0	2.4	2	0	0	2	2	2	0	Zonular	occludens	toxin	(Zot)
Rad17	PF03215.15	gi|345006630|ref|YP_004809483.1|	-	0.24	11.3	0.0	6.7	6.6	0.0	2.1	2	0	0	2	2	2	0	Rad17	P-loop	domain
ResIII	PF04851.15	gi|345006630|ref|YP_004809483.1|	-	0.25	11.4	0.0	8.5	6.3	0.0	2.3	2	0	0	2	2	2	0	Type	III	restriction	enzyme,	res	subunit
DEAD_assoc	PF08494.11	gi|345006631|ref|YP_004809484.1|	-	1.7e-34	119.3	0.1	5.1e-34	117.7	0.0	1.9	2	0	0	2	2	2	1	DEAD/H	associated
DEAD	PF00270.29	gi|345006631|ref|YP_004809484.1|	-	7.6e-33	113.7	0.0	2.7e-31	108.7	0.0	2.3	2	0	0	2	2	2	1	DEAD/DEAH	box	helicase
Helicase_C	PF00271.31	gi|345006631|ref|YP_004809484.1|	-	1.3e-21	77.0	0.0	6.3e-21	74.8	0.0	2.1	3	0	0	3	3	2	1	Helicase	conserved	C-terminal	domain
ResIII	PF04851.15	gi|345006631|ref|YP_004809484.1|	-	2.8e-11	43.7	0.0	5.1e-11	42.9	0.0	1.4	1	0	0	1	1	1	1	Type	III	restriction	enzyme,	res	subunit
AAA_19	PF13245.6	gi|345006631|ref|YP_004809484.1|	-	2.3e-05	24.8	0.2	0.0004	20.7	0.1	2.4	2	0	0	2	2	2	1	AAA	domain
SNF2_N	PF00176.23	gi|345006631|ref|YP_004809484.1|	-	0.00095	18.0	0.0	0.0042	15.9	0.0	1.8	2	0	0	2	2	2	1	SNF2	family	N-terminal	domain
AAA_25	PF13481.6	gi|345006631|ref|YP_004809484.1|	-	0.0022	17.6	0.8	0.005	16.4	0.1	2.0	2	0	0	2	2	2	1	AAA	domain
AAA_30	PF13604.6	gi|345006631|ref|YP_004809484.1|	-	0.012	15.4	0.1	0.037	13.7	0.1	1.9	1	0	0	1	1	1	0	AAA	domain
UvrD-helicase	PF00580.21	gi|345006631|ref|YP_004809484.1|	-	0.017	14.7	0.0	0.034	13.6	0.0	1.4	1	0	0	1	1	1	0	UvrD/REP	helicase	N-terminal	domain
HypA	PF01155.19	gi|345006631|ref|YP_004809484.1|	-	0.059	13.4	0.1	0.17	11.9	0.1	1.7	1	0	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
DUF1178	PF06676.11	gi|345006631|ref|YP_004809484.1|	-	0.06	13.7	0.6	0.19	12.1	0.2	2.0	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1178)
AAA_22	PF13401.6	gi|345006631|ref|YP_004809484.1|	-	0.063	13.5	0.4	0.55	10.5	0.4	2.4	1	1	0	1	1	1	0	AAA	domain
ATP-synt_ab	PF00006.25	gi|345006631|ref|YP_004809484.1|	-	0.12	12.0	0.0	5.7	6.5	0.0	2.4	2	0	0	2	2	2	0	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
Peptidase_M20	PF01546.28	gi|345006632|ref|YP_004809485.1|	-	3.6e-24	85.6	9.3	1.1e-23	84.1	9.3	1.7	1	1	0	1	1	1	1	Peptidase	family	M20/M25/M40
Peptidase_M28	PF04389.17	gi|345006632|ref|YP_004809485.1|	-	4.7e-09	36.2	0.0	8.6e-09	35.4	0.0	1.4	1	0	0	1	1	1	1	Peptidase	family	M28
M20_dimer	PF07687.14	gi|345006632|ref|YP_004809485.1|	-	2.7e-06	27.2	0.1	7.3e-06	25.9	0.1	1.7	1	0	0	1	1	1	1	Peptidase	dimerisation	domain
Peptidase_M42	PF05343.14	gi|345006632|ref|YP_004809485.1|	-	0.013	14.5	2.2	0.4	9.7	0.0	3.0	2	1	1	3	3	3	0	M42	glutamyl	aminopeptidase
Abhydrolase_1	PF00561.20	gi|345006633|ref|YP_004809486.1|	-	3.6e-29	102.2	0.0	4.5e-20	72.4	0.0	2.1	2	0	0	2	2	2	2	alpha/beta	hydrolase	fold
Abhydrolase_6	PF12697.7	gi|345006633|ref|YP_004809486.1|	-	2.7e-17	64.1	7.3	3.4e-17	63.8	7.3	1.1	1	0	0	1	1	1	1	Alpha/beta	hydrolase	family
Hydrolase_4	PF12146.8	gi|345006633|ref|YP_004809486.1|	-	6.1e-14	51.9	0.0	3.9e-13	49.2	0.0	2.0	1	1	0	1	1	1	1	Serine	aminopeptidase,	S33
Peptidase_S9	PF00326.21	gi|345006633|ref|YP_004809486.1|	-	0.00016	21.3	0.1	0.36	10.3	0.0	2.2	2	0	0	2	2	2	2	Prolyl	oligopeptidase	family
Abhydrolase_4	PF08386.10	gi|345006633|ref|YP_004809486.1|	-	0.0013	18.8	0.0	0.0032	17.6	0.0	1.5	1	0	0	1	1	1	1	TAP-like	protein
Ndr	PF03096.14	gi|345006633|ref|YP_004809486.1|	-	0.018	13.8	0.0	0.03	13.0	0.0	1.2	1	0	0	1	1	1	0	Ndr	family
Pyr_redox_2	PF07992.14	gi|345006633|ref|YP_004809486.1|	-	0.21	10.8	0.0	0.31	10.2	0.0	1.2	1	0	0	1	1	1	0	Pyridine	nucleotide-disulphide	oxidoreductase
Peptidase_M28	PF04389.17	gi|345006634|ref|YP_004809487.1|	-	2.4e-15	56.8	0.0	4.8e-15	55.8	0.0	1.4	1	0	0	1	1	1	1	Peptidase	family	M28
Peptidase_M20	PF01546.28	gi|345006634|ref|YP_004809487.1|	-	0.0049	16.6	0.0	0.016	14.9	0.0	1.8	1	1	1	2	2	2	1	Peptidase	family	M20/M25/M40
EPSP_synthase	PF00275.20	gi|345006635|ref|YP_004809488.1|	-	3.7e-108	361.9	0.0	4.4e-108	361.7	0.0	1.0	1	0	0	1	1	1	1	EPSP	synthase	(3-phosphoshikimate	1-carboxyvinyltransferase)
Phosphodiest	PF01663.22	gi|345006636|ref|YP_004809489.1|	-	1.2e-22	81.0	1.0	4.1e-22	79.3	1.0	1.7	1	1	0	1	1	1	1	Type	I	phosphodiesterase	/	nucleotide	pyrophosphatase
PglZ	PF08665.12	gi|345006636|ref|YP_004809489.1|	-	1.4e-07	31.8	0.2	0.021	14.9	0.3	2.2	2	0	0	2	2	2	2	PglZ	domain
Chorismate_synt	PF01264.21	gi|345006637|ref|YP_004809490.1|	-	1.8e-119	398.3	0.0	2.1e-119	398.1	0.0	1.0	1	0	0	1	1	1	1	Chorismate	synthase
CAP	PF00188.26	gi|345006638|ref|YP_004809491.1|	-	1.5e-14	54.9	0.1	2.2e-14	54.4	0.1	1.3	1	0	0	1	1	1	1	Cysteine-rich	secretory	protein	family
PKD	PF00801.20	gi|345006639|ref|YP_004809492.1|	-	3e-05	23.8	21.5	0.001	18.9	0.0	6.7	6	2	0	6	6	6	4	PKD	domain
DUF3082	PF11282.8	gi|345006640|ref|YP_004809493.1|	-	0.34	11.2	5.4	0.62	10.4	0.4	2.0	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF3082)
Gram_pos_anchor	PF00746.21	gi|345006640|ref|YP_004809493.1|	-	5.7	7.0	6.6	14	5.7	0.4	2.3	2	0	0	2	2	2	0	LPXTG	cell	wall	anchor	motif
POR	PF01558.18	gi|345006641|ref|YP_004809494.1|	-	7.6e-48	162.9	0.0	1.5e-47	162.0	0.0	1.4	1	0	0	1	1	1	1	Pyruvate	ferredoxin/flavodoxin	oxidoreductase
POR_N	PF01855.19	gi|345006641|ref|YP_004809494.1|	-	8.9e-48	163.0	0.1	1.6e-47	162.2	0.1	1.4	1	0	0	1	1	1	1	Pyruvate	flavodoxin/ferredoxin	oxidoreductase,	thiamine	diP-bdg
PFOR_II	PF17147.4	gi|345006641|ref|YP_004809494.1|	-	2.4e-11	43.9	0.1	4.5e-11	43.0	0.1	1.5	1	0	0	1	1	1	1	Pyruvate:ferredoxin	oxidoreductase	core	domain	II
TPP_enzyme_N	PF02776.18	gi|345006641|ref|YP_004809494.1|	-	8.9e-05	22.2	0.7	0.00024	20.8	0.1	2.0	2	0	0	2	2	2	1	Thiamine	pyrophosphate	enzyme,	N-terminal	TPP	binding	domain
Transketolase_C	PF02780.20	gi|345006641|ref|YP_004809494.1|	-	0.00031	20.6	0.0	0.00079	19.3	0.0	1.6	1	0	0	1	1	1	1	Transketolase,	C-terminal	domain
TPP_enzyme_C	PF02775.21	gi|345006642|ref|YP_004809495.1|	-	1.2e-31	109.6	0.0	1.8e-31	109.0	0.0	1.2	1	0	0	1	1	1	1	Thiamine	pyrophosphate	enzyme,	C-terminal	TPP	binding	domain
PFO_beta_C	PF12367.8	gi|345006642|ref|YP_004809495.1|	-	0.0099	16.0	1.8	0.027	14.6	1.8	1.8	1	1	0	1	1	1	1	Pyruvate	ferredoxin	oxidoreductase	beta	subunit	C	terminal
HTH_24	PF13412.6	gi|345006643|ref|YP_004809496.1|	-	6.3e-13	48.1	0.1	1.1e-12	47.3	0.1	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
AsnC_trans_reg	PF01037.21	gi|345006643|ref|YP_004809496.1|	-	4.2e-09	36.2	0.0	7e-09	35.5	0.0	1.4	1	0	0	1	1	1	1	Lrp/AsnC	ligand	binding	domain
HTH_11	PF08279.12	gi|345006643|ref|YP_004809496.1|	-	1e-08	35.0	0.6	2.2e-08	33.9	0.1	1.9	3	0	0	3	3	1	1	HTH	domain
HTH_AsnC-type	PF13404.6	gi|345006643|ref|YP_004809496.1|	-	3.1e-08	33.3	0.2	5.9e-08	32.4	0.2	1.5	1	0	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
HTH_5	PF01022.20	gi|345006643|ref|YP_004809496.1|	-	1.1e-07	31.5	0.0	1.9e-07	30.8	0.0	1.3	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_DeoR	PF08220.12	gi|345006643|ref|YP_004809496.1|	-	2.1e-07	30.6	0.1	4.1e-07	29.6	0.1	1.5	1	0	0	1	1	1	1	DeoR-like	helix-turn-helix	domain
HTH_20	PF12840.7	gi|345006643|ref|YP_004809496.1|	-	3.7e-07	30.1	0.0	8.5e-07	28.9	0.0	1.5	2	0	0	2	2	1	1	Helix-turn-helix	domain
HTH_IclR	PF09339.10	gi|345006643|ref|YP_004809496.1|	-	5.8e-07	29.2	0.0	1e-06	28.4	0.0	1.4	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
MarR	PF01047.22	gi|345006643|ref|YP_004809496.1|	-	2.5e-06	27.3	0.0	5.1e-06	26.3	0.0	1.5	1	0	0	1	1	1	1	MarR	family
Fe_dep_repress	PF01325.19	gi|345006643|ref|YP_004809496.1|	-	4.6e-06	26.7	0.0	1.1e-05	25.6	0.0	1.6	1	0	0	1	1	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
MarR_2	PF12802.7	gi|345006643|ref|YP_004809496.1|	-	1.3e-05	25.0	0.1	0.0001	22.1	0.0	2.2	2	0	0	2	2	2	1	MarR	family
HTH_23	PF13384.6	gi|345006643|ref|YP_004809496.1|	-	2.3e-05	24.1	0.0	4.2e-05	23.2	0.0	1.5	1	0	0	1	1	1	1	Homeodomain-like	domain
TrmB	PF01978.19	gi|345006643|ref|YP_004809496.1|	-	4.5e-05	23.3	0.0	8.1e-05	22.4	0.0	1.5	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
Rrf2	PF02082.20	gi|345006643|ref|YP_004809496.1|	-	0.00015	22.1	0.0	0.00028	21.2	0.0	1.5	1	0	0	1	1	1	1	Transcriptional	regulator
HTH_36	PF13730.6	gi|345006643|ref|YP_004809496.1|	-	0.00034	20.5	0.0	0.00077	19.4	0.0	1.6	1	1	0	1	1	1	1	Helix-turn-helix	domain
GntR	PF00392.21	gi|345006643|ref|YP_004809496.1|	-	0.00037	20.1	0.0	0.00077	19.1	0.0	1.5	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	gntR	family
HTH_29	PF13551.6	gi|345006643|ref|YP_004809496.1|	-	0.00051	20.0	0.0	0.00085	19.3	0.0	1.4	1	0	0	1	1	1	1	Winged	helix-turn	helix
HTH_Crp_2	PF13545.6	gi|345006643|ref|YP_004809496.1|	-	0.00083	19.3	0.1	0.0097	15.9	0.0	2.3	2	1	1	3	3	2	1	Crp-like	helix-turn-helix	domain
HTH_6	PF01418.17	gi|345006643|ref|YP_004809496.1|	-	0.0011	19.0	0.0	0.0017	18.3	0.0	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain,	rpiR	family
FaeA	PF04703.12	gi|345006643|ref|YP_004809496.1|	-	0.0019	18.5	0.0	0.0031	17.8	0.0	1.3	1	0	0	1	1	1	1	FaeA-like	protein
HP0268	PF18618.1	gi|345006643|ref|YP_004809496.1|	-	0.0026	18.2	0.0	0.0051	17.2	0.0	1.5	1	0	0	1	1	1	1	HP0268
HTH_10	PF04967.12	gi|345006643|ref|YP_004809496.1|	-	0.0027	17.5	0.1	0.0056	16.4	0.1	1.5	1	0	0	1	1	1	1	HTH	DNA	binding	domain
HTH_28	PF13518.6	gi|345006643|ref|YP_004809496.1|	-	0.0032	17.6	0.0	0.0053	16.9	0.0	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
TetR_N	PF00440.23	gi|345006643|ref|YP_004809496.1|	-	0.0048	16.7	0.0	0.0097	15.7	0.0	1.5	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	tetR	family
HTH_45	PF14947.6	gi|345006643|ref|YP_004809496.1|	-	0.0061	16.5	0.0	0.0096	15.9	0.0	1.3	1	0	0	1	1	1	1	Winged	helix-turn-helix
HTH_47	PF16221.5	gi|345006643|ref|YP_004809496.1|	-	0.0074	15.8	0.2	0.015	14.9	0.0	1.6	2	0	0	2	2	2	1	winged	helix-turn-helix
LacI	PF00356.21	gi|345006643|ref|YP_004809496.1|	-	0.011	15.5	0.0	0.12	12.2	0.0	2.3	2	0	0	2	2	2	0	Bacterial	regulatory	proteins,	lacI	family
HTH_Tnp_1	PF01527.20	gi|345006643|ref|YP_004809496.1|	-	0.012	15.9	0.0	0.021	15.2	0.0	1.4	1	1	0	1	1	1	0	Transposase
MerR	PF00376.23	gi|345006643|ref|YP_004809496.1|	-	0.016	14.9	0.1	0.028	14.2	0.1	1.4	1	0	0	1	1	1	0	MerR	family	regulatory	protein
HTH_Tnp_ISL3	PF13542.6	gi|345006643|ref|YP_004809496.1|	-	0.017	14.5	0.1	0.028	13.8	0.1	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain	of	transposase	family	ISL3
HTH_17	PF12728.7	gi|345006643|ref|YP_004809496.1|	-	0.019	15.1	0.0	0.031	14.5	0.0	1.3	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_1	PF00126.27	gi|345006643|ref|YP_004809496.1|	-	0.021	14.8	0.0	0.045	13.7	0.0	1.6	1	0	0	1	1	1	0	Bacterial	regulatory	helix-turn-helix	protein,	lysR	family
RPA_C	PF08784.11	gi|345006643|ref|YP_004809496.1|	-	0.021	15.5	0.0	0.038	14.7	0.0	1.4	1	0	0	1	1	1	0	Replication	protein	A	C	terminal
TFIIE_alpha	PF02002.17	gi|345006643|ref|YP_004809496.1|	-	0.035	14.0	0.0	0.058	13.3	0.0	1.3	1	0	0	1	1	1	0	TFIIE	alpha	subunit
Sigma70_r4_2	PF08281.12	gi|345006643|ref|YP_004809496.1|	-	0.095	12.4	0.1	0.18	11.5	0.1	1.4	1	0	0	1	1	1	0	Sigma-70,	region	4
HTH_22	PF13309.6	gi|345006643|ref|YP_004809496.1|	-	0.1	12.7	0.0	0.2	11.7	0.0	1.5	1	0	0	1	1	1	0	HTH	domain
HTH_7	PF02796.15	gi|345006643|ref|YP_004809496.1|	-	0.1	12.7	0.1	0.19	11.8	0.1	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain	of	resolvase
Sigma70_r4	PF04545.16	gi|345006643|ref|YP_004809496.1|	-	0.12	11.9	0.0	0.24	10.9	0.0	1.6	1	0	0	1	1	1	0	Sigma-70,	region	4
UPF0122	PF04297.14	gi|345006643|ref|YP_004809496.1|	-	0.14	12.4	0.1	0.22	11.8	0.1	1.3	1	0	0	1	1	1	0	Putative	helix-turn-helix	protein,	YlxM	/	p13	like
Ribosomal_S25	PF03297.15	gi|345006643|ref|YP_004809496.1|	-	0.15	12.3	0.0	0.23	11.6	0.0	1.3	1	0	0	1	1	1	0	S25	ribosomal	protein
TnsD	PF15978.5	gi|345006643|ref|YP_004809496.1|	-	0.15	11.0	0.1	0.22	10.5	0.1	1.1	1	0	0	1	1	1	0	Tn7-like	transposition	protein	D
Phage_NinH	PF06322.11	gi|345006643|ref|YP_004809496.1|	-	0.17	11.8	0.0	0.3	11.0	0.0	1.4	1	0	0	1	1	1	0	Phage	NinH	protein
IMS	PF00817.20	gi|345006644|ref|YP_004809497.1|	-	1.8e-37	128.6	0.0	4.1e-37	127.5	0.0	1.6	1	0	0	1	1	1	1	impB/mucB/samB	family
IMS_C	PF11799.8	gi|345006644|ref|YP_004809497.1|	-	1.4e-15	58.0	0.3	2.8e-15	57.1	0.3	1.5	1	0	0	1	1	1	1	impB/mucB/samB	family	C-terminal	domain
IMS_HHH	PF11798.8	gi|345006644|ref|YP_004809497.1|	-	1.3e-07	31.5	0.0	2.9e-07	30.4	0.0	1.6	1	0	0	1	1	1	1	IMS	family	HHH	motif
HHH_5	PF14520.6	gi|345006644|ref|YP_004809497.1|	-	0.0021	18.6	0.0	0.007	16.9	0.0	1.9	1	0	0	1	1	1	1	Helix-hairpin-helix	domain
DNA_pol_lambd_f	PF10391.9	gi|345006644|ref|YP_004809497.1|	-	0.026	14.4	0.0	0.055	13.3	0.0	1.4	1	0	0	1	1	1	0	Fingers	domain	of	DNA	polymerase	lambda
Scaffolding_pro	PF11418.8	gi|345006644|ref|YP_004809497.1|	-	0.13	12.8	0.0	0.28	11.7	0.0	1.5	1	0	0	1	1	1	0	Phi29	scaffolding	protein
Cdd1	PF11731.8	gi|345006644|ref|YP_004809497.1|	-	0.16	12.3	0.0	0.41	10.9	0.0	1.6	1	0	0	1	1	1	0	Pathogenicity	locus
DUF87	PF01935.17	gi|345006645|ref|YP_004809498.1|	-	2e-09	37.9	0.6	4.2e-09	36.9	0.0	1.7	2	0	0	2	2	2	1	Helicase	HerA,	central	domain
DUF853	PF05872.12	gi|345006645|ref|YP_004809498.1|	-	9.4e-05	21.2	3.0	0.00043	19.0	0.0	2.7	3	0	0	3	3	3	1	Bacterial	protein	of	unknown	function	(DUF853)
AAA_16	PF13191.6	gi|345006645|ref|YP_004809498.1|	-	0.00097	19.6	0.0	0.00097	19.6	0.0	2.7	3	0	0	3	3	2	1	AAA	ATPase	domain
APS_kinase	PF01583.20	gi|345006645|ref|YP_004809498.1|	-	0.0012	18.7	0.0	0.0043	16.9	0.0	1.9	2	0	0	2	2	2	1	Adenylylsulphate	kinase
CbiA	PF01656.23	gi|345006645|ref|YP_004809498.1|	-	0.002	18.2	0.0	0.0042	17.1	0.0	1.7	1	0	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
HOOK	PF05622.12	gi|345006645|ref|YP_004809498.1|	-	0.0073	14.5	3.2	0.011	13.9	3.2	1.2	1	0	0	1	1	1	1	HOOK	protein
AAA	PF00004.29	gi|345006645|ref|YP_004809498.1|	-	0.0092	16.4	0.0	0.27	11.6	0.0	2.5	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
DUF1151	PF06625.11	gi|345006645|ref|YP_004809498.1|	-	0.017	15.0	2.7	0.044	13.7	2.7	1.6	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1151)
TMF_DNA_bd	PF12329.8	gi|345006645|ref|YP_004809498.1|	-	0.02	14.9	2.4	0.05	13.6	2.4	1.7	1	0	0	1	1	1	0	TATA	element	modulatory	factor	1	DNA	binding
CENP-H	PF05837.12	gi|345006645|ref|YP_004809498.1|	-	0.047	14.1	1.1	0.12	12.8	1.1	1.6	1	0	0	1	1	1	0	Centromere	protein	H	(CENP-H)
TrwB_AAD_bind	PF10412.9	gi|345006645|ref|YP_004809498.1|	-	0.054	12.4	0.0	0.12	11.2	0.0	1.5	1	0	0	1	1	1	0	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
AAA_10	PF12846.7	gi|345006645|ref|YP_004809498.1|	-	0.062	12.2	0.0	0.22	10.4	0.0	1.8	1	1	1	2	2	2	0	AAA-like	domain
BRE1	PF08647.11	gi|345006645|ref|YP_004809498.1|	-	0.098	12.7	3.4	0.2	11.8	3.4	1.5	1	0	0	1	1	1	0	BRE1	E3	ubiquitin	ligase
Lectin_N	PF03954.14	gi|345006645|ref|YP_004809498.1|	-	0.11	12.2	0.5	0.21	11.3	0.5	1.3	1	0	0	1	1	1	0	Hepatic	lectin,	N-terminal	domain
AAA_31	PF13614.6	gi|345006645|ref|YP_004809498.1|	-	0.12	12.2	0.1	0.23	11.4	0.1	1.3	1	0	0	1	1	1	0	AAA	domain
AAA_22	PF13401.6	gi|345006645|ref|YP_004809498.1|	-	0.14	12.4	0.3	0.39	11.0	0.0	1.9	2	0	0	2	2	1	0	AAA	domain
AAA_18	PF13238.6	gi|345006645|ref|YP_004809498.1|	-	0.18	12.4	0.6	0.48	11.0	0.0	2.0	2	0	0	2	2	1	0	AAA	domain
DUF3450	PF11932.8	gi|345006645|ref|YP_004809498.1|	-	0.2	11.0	6.0	0.38	10.0	6.0	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3450)
DLP_helical	PF18709.1	gi|345006645|ref|YP_004809498.1|	-	0.2	10.8	2.5	0.35	10.0	2.5	1.3	1	0	0	1	1	1	0	Dynamin-like	helical	domain
FH2	PF02181.23	gi|345006645|ref|YP_004809498.1|	-	0.2	10.7	0.8	0.33	10.0	0.8	1.2	1	0	0	1	1	1	0	Formin	Homology	2	Domain
AAA_29	PF13555.6	gi|345006645|ref|YP_004809498.1|	-	0.21	11.4	0.1	0.58	10.0	0.1	1.7	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
COG2	PF06148.11	gi|345006645|ref|YP_004809498.1|	-	0.71	10.0	3.3	1.5	8.9	3.3	1.5	1	0	0	1	1	1	0	COG	(conserved	oligomeric	Golgi)	complex	component,	COG2
DivIVA	PF05103.13	gi|345006645|ref|YP_004809498.1|	-	1.8	8.7	6.7	3.8	7.6	6.7	1.5	1	0	0	1	1	1	0	DivIVA	protein
SKA1	PF07160.12	gi|345006645|ref|YP_004809498.1|	-	2.1	8.1	10.0	0.1	12.4	0.8	2.5	2	0	0	2	2	2	0	Spindle	and	kinetochore-associated	protein	1
DUF724	PF05266.14	gi|345006645|ref|YP_004809498.1|	-	2.4	8.0	6.0	4.4	7.1	6.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF724)
Spc7	PF08317.11	gi|345006645|ref|YP_004809498.1|	-	3.5	6.4	7.5	6	5.7	7.5	1.3	1	0	0	1	1	1	0	Spc7	kinetochore	protein
Pox_A_type_inc	PF04508.12	gi|345006645|ref|YP_004809498.1|	-	5.4	7.0	5.9	3.3	7.7	1.6	2.5	2	0	0	2	2	2	0	Viral	A-type	inclusion	protein	repeat
JIP_LZII	PF16471.5	gi|345006645|ref|YP_004809498.1|	-	9.6	6.5	12.6	0.079	13.1	3.6	2.2	2	0	0	2	2	1	0	JNK-interacting	protein	leucine	zipper	II
TIM	PF00121.18	gi|345006647|ref|YP_004809500.1|	-	2.7e-07	30.2	0.0	3.4e-07	29.9	0.0	1.1	1	0	0	1	1	1	1	Triosephosphate	isomerase
ThiG	PF05690.14	gi|345006647|ref|YP_004809500.1|	-	0.00015	21.2	5.2	0.00015	21.2	5.2	2.0	2	0	0	2	2	2	1	Thiazole	biosynthesis	protein	ThiG
FMN_dh	PF01070.18	gi|345006647|ref|YP_004809500.1|	-	0.0079	15.3	7.5	0.0079	15.3	7.5	1.5	1	1	0	1	1	1	1	FMN-dependent	dehydrogenase
Glu_synthase	PF01645.17	gi|345006647|ref|YP_004809500.1|	-	0.02	14.0	2.0	0.026	13.7	1.1	1.5	2	0	0	2	2	2	0	Conserved	region	in	glutamate	synthase
IGPS	PF00218.21	gi|345006647|ref|YP_004809500.1|	-	0.087	12.0	0.0	0.19	10.8	0.0	1.6	2	0	0	2	2	2	0	Indole-3-glycerol	phosphate	synthase
Hydrolase_like	PF13242.6	gi|345006647|ref|YP_004809500.1|	-	0.16	12.0	4.2	0.19	11.8	0.7	2.4	2	0	0	2	2	2	0	HAD-hyrolase-like
NMO	PF03060.15	gi|345006647|ref|YP_004809500.1|	-	1	8.7	13.8	0.26	10.7	10.6	1.6	2	0	0	2	2	2	0	Nitronate	monooxygenase
HTH_3	PF01381.22	gi|345006648|ref|YP_004809501.1|	-	1.4e-09	37.8	1.4	2.2e-09	37.2	1.4	1.3	1	0	0	1	1	1	1	Helix-turn-helix
HTH_19	PF12844.7	gi|345006648|ref|YP_004809501.1|	-	3.3e-07	30.2	1.9	6.7e-07	29.2	1.9	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_31	PF13560.6	gi|345006648|ref|YP_004809501.1|	-	5.1e-05	23.5	0.2	9.5e-05	22.7	0.2	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_25	PF13413.6	gi|345006648|ref|YP_004809501.1|	-	0.00061	19.6	1.0	0.0011	18.8	1.0	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
IATP	PF04568.12	gi|345006648|ref|YP_004809501.1|	-	0.0031	17.9	2.1	0.0051	17.2	2.1	1.3	1	0	0	1	1	1	1	Mitochondrial	ATPase	inhibitor,	IATP
HTH_37	PF13744.6	gi|345006648|ref|YP_004809501.1|	-	0.041	13.9	0.2	0.067	13.1	0.2	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain
zf-TFIIB	PF13453.6	gi|345006648|ref|YP_004809501.1|	-	0.33	10.3	2.0	0.66	9.4	2.0	1.6	1	0	0	1	1	1	0	Transcription	factor	zinc-finger
CDP-OH_P_transf	PF01066.21	gi|345006649|ref|YP_004809502.1|	-	6.4e-09	36.5	1.1	6.4e-09	36.5	1.1	2.5	2	1	0	2	2	2	1	CDP-alcohol	phosphatidyltransferase
AAA_18	PF13238.6	gi|345006650|ref|YP_004809503.1|	-	1.1e-23	84.2	0.1	1.5e-23	83.7	0.1	1.2	1	0	0	1	1	1	1	AAA	domain
AAA_17	PF13207.6	gi|345006650|ref|YP_004809503.1|	-	4.2e-07	30.5	1.2	0.013	15.9	0.4	2.3	1	1	1	2	2	2	2	AAA	domain
AAA_33	PF13671.6	gi|345006650|ref|YP_004809503.1|	-	3.9e-06	27.1	1.0	0.001	19.2	1.0	2.5	1	1	0	1	1	1	1	AAA	domain
AAA_28	PF13521.6	gi|345006650|ref|YP_004809503.1|	-	0.00018	21.8	3.7	0.0019	18.5	0.7	2.2	1	1	0	2	2	2	1	AAA	domain
AAA_16	PF13191.6	gi|345006650|ref|YP_004809503.1|	-	0.00035	21.0	0.4	0.00053	20.4	0.4	1.3	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA	PF00004.29	gi|345006650|ref|YP_004809503.1|	-	0.00073	20.0	0.3	0.00085	19.7	0.3	1.6	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
SKI	PF01202.22	gi|345006650|ref|YP_004809503.1|	-	0.00093	19.4	0.2	0.64	10.1	0.0	2.1	2	0	0	2	2	2	2	Shikimate	kinase
MeaB	PF03308.16	gi|345006650|ref|YP_004809503.1|	-	0.0016	17.5	0.8	0.0029	16.6	0.2	1.6	2	0	0	2	2	2	1	Methylmalonyl	Co-A	mutase-associated	GTPase	MeaB
dNK	PF01712.19	gi|345006650|ref|YP_004809503.1|	-	0.0016	18.4	0.1	0.076	12.9	0.0	2.1	2	0	0	2	2	2	1	Deoxynucleoside	kinase
NTPase_1	PF03266.15	gi|345006650|ref|YP_004809503.1|	-	0.0032	17.4	0.1	0.011	15.7	0.0	1.9	2	0	0	2	2	2	1	NTPase
ADK	PF00406.22	gi|345006650|ref|YP_004809503.1|	-	0.0038	17.3	0.2	0.81	9.8	0.1	2.2	2	0	0	2	2	2	1	Adenylate	kinase
AAA_22	PF13401.6	gi|345006650|ref|YP_004809503.1|	-	0.0075	16.5	0.2	0.01	16.1	0.2	1.5	1	1	0	1	1	1	1	AAA	domain
IstB_IS21	PF01695.17	gi|345006650|ref|YP_004809503.1|	-	0.0081	15.9	0.1	0.013	15.2	0.1	1.3	1	0	0	1	1	1	1	IstB-like	ATP	binding	protein
ABC_tran	PF00005.27	gi|345006650|ref|YP_004809503.1|	-	0.011	16.3	0.1	0.041	14.4	0.2	1.9	2	1	0	2	2	2	0	ABC	transporter
RuvB_N	PF05496.12	gi|345006650|ref|YP_004809503.1|	-	0.015	15.0	0.0	0.033	13.9	0.0	1.5	1	0	0	1	1	1	0	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
MMR_HSR1	PF01926.23	gi|345006650|ref|YP_004809503.1|	-	0.017	15.2	0.1	0.056	13.5	0.1	1.9	1	1	0	1	1	1	0	50S	ribosome-binding	GTPase
APS_kinase	PF01583.20	gi|345006650|ref|YP_004809503.1|	-	0.034	14.0	0.0	0.055	13.4	0.0	1.3	1	0	0	1	1	1	0	Adenylylsulphate	kinase
CPT	PF07931.12	gi|345006650|ref|YP_004809503.1|	-	0.035	13.9	0.5	6.8	6.5	0.0	2.2	2	0	0	2	2	2	0	Chloramphenicol	phosphotransferase-like	protein
CoaE	PF01121.20	gi|345006650|ref|YP_004809503.1|	-	0.046	13.4	0.4	0.39	10.4	0.1	2.1	2	0	0	2	2	2	0	Dephospho-CoA	kinase
AAA_30	PF13604.6	gi|345006650|ref|YP_004809503.1|	-	0.062	13.0	0.2	0.12	12.1	0.2	1.4	1	0	0	1	1	1	0	AAA	domain
Cytidylate_kin	PF02224.18	gi|345006650|ref|YP_004809503.1|	-	0.066	12.9	0.2	0.18	11.5	0.1	1.8	2	0	0	2	2	2	0	Cytidylate	kinase
AAA_24	PF13479.6	gi|345006650|ref|YP_004809503.1|	-	0.083	12.6	0.0	0.11	12.2	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
AAA_29	PF13555.6	gi|345006650|ref|YP_004809503.1|	-	0.091	12.5	0.1	0.22	11.3	0.1	1.6	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
Thymidylate_kin	PF02223.17	gi|345006650|ref|YP_004809503.1|	-	0.11	12.1	0.3	11	5.7	0.0	2.1	2	0	0	2	2	2	0	Thymidylate	kinase
DUF815	PF05673.13	gi|345006650|ref|YP_004809503.1|	-	0.12	11.5	0.0	0.18	10.9	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF815)
AAA_25	PF13481.6	gi|345006650|ref|YP_004809503.1|	-	0.13	11.9	1.1	0.41	10.2	0.4	1.9	1	1	0	2	2	2	0	AAA	domain
ATPase	PF06745.13	gi|345006650|ref|YP_004809503.1|	-	0.13	11.6	0.3	0.8	9.0	0.1	2.0	2	0	0	2	2	2	0	KaiC
PRK	PF00485.18	gi|345006650|ref|YP_004809503.1|	-	0.14	11.9	0.1	0.61	9.8	0.0	1.9	2	0	0	2	2	2	0	Phosphoribulokinase	/	Uridine	kinase	family
KTI12	PF08433.10	gi|345006650|ref|YP_004809503.1|	-	0.2	11.1	0.0	0.35	10.3	0.0	1.4	1	0	0	1	1	1	0	Chromatin	associated	protein	KTI12
AAA_19	PF13245.6	gi|345006650|ref|YP_004809503.1|	-	0.22	11.8	0.8	0.54	10.6	0.1	1.8	2	1	0	2	2	2	0	AAA	domain
Aminotran_1_2	PF00155.21	gi|345006651|ref|YP_004809504.1|	-	1.5e-66	225.1	0.0	1.7e-66	224.9	0.0	1.0	1	0	0	1	1	1	1	Aminotransferase	class	I	and	II
Alliinase_C	PF04864.13	gi|345006651|ref|YP_004809504.1|	-	0.00041	19.3	0.0	0.00056	18.9	0.0	1.2	1	0	0	1	1	1	1	Allinase
BUD22	PF09073.10	gi|345006652|ref|YP_004809505.1|	-	1.3	8.2	33.5	1.7	7.9	33.5	1.1	1	0	0	1	1	1	0	BUD22
SDA1	PF05285.12	gi|345006652|ref|YP_004809505.1|	-	3.7	6.9	30.9	5.3	6.4	30.9	1.2	1	0	0	1	1	1	0	SDA1
Nop14	PF04147.12	gi|345006652|ref|YP_004809505.1|	-	4.1	5.5	29.5	5.7	5.0	29.5	1.3	1	0	0	1	1	1	0	Nop14-like	family
GTP-bdg_N	PF13167.6	gi|345006653|ref|YP_004809506.1|	-	3e-20	72.7	0.0	1.1e-19	70.9	0.0	2.0	1	0	0	1	1	1	1	GTP-binding	GTPase	N-terminal
MMR_HSR1	PF01926.23	gi|345006653|ref|YP_004809506.1|	-	4.4e-16	59.0	0.0	1.7e-15	57.1	0.0	2.0	2	0	0	2	2	2	1	50S	ribosome-binding	GTPase
GTP_EFTU	PF00009.27	gi|345006653|ref|YP_004809506.1|	-	5e-09	36.0	0.6	6.6e-08	32.3	0.1	2.5	2	1	0	2	2	2	1	Elongation	factor	Tu	GTP	binding	domain
GTP-bdg_M	PF16360.5	gi|345006653|ref|YP_004809506.1|	-	4.5e-05	23.9	5.3	0.00017	22.1	5.3	1.9	1	1	0	1	1	1	1	GTP-binding	GTPase	Middle	Region
FeoB_N	PF02421.18	gi|345006653|ref|YP_004809506.1|	-	7.3e-05	22.3	0.3	0.12	11.9	0.0	3.1	3	0	0	3	3	3	2	Ferrous	iron	transport	protein	B
RsgA_GTPase	PF03193.16	gi|345006653|ref|YP_004809506.1|	-	0.0006	19.7	0.0	1.5	8.7	0.0	2.5	2	0	0	2	2	2	2	RsgA	GTPase
cobW	PF02492.19	gi|345006653|ref|YP_004809506.1|	-	0.0013	18.4	0.2	0.35	10.4	0.1	2.9	3	1	0	3	3	3	1	CobW/HypB/UreG,	nucleotide-binding	domain
Snapin_Pallidin	PF14712.6	gi|345006653|ref|YP_004809506.1|	-	0.0054	17.1	0.3	0.013	16.0	0.3	1.6	1	0	0	1	1	1	1	Snapin/Pallidin
MMR_HSR1_Xtn	PF16897.5	gi|345006653|ref|YP_004809506.1|	-	0.024	14.6	0.0	0.16	12.0	0.0	2.2	2	0	0	2	2	2	0	C-terminal	region	of	MMR_HSR1	domain
AAA_25	PF13481.6	gi|345006653|ref|YP_004809506.1|	-	0.025	14.2	0.8	3.7	7.1	0.0	2.8	3	0	0	3	3	3	0	AAA	domain
Arf	PF00025.21	gi|345006653|ref|YP_004809506.1|	-	0.029	13.8	0.0	0.79	9.2	0.0	2.3	2	0	0	2	2	2	0	ADP-ribosylation	factor	family
AAA_16	PF13191.6	gi|345006653|ref|YP_004809506.1|	-	0.038	14.4	3.8	0.058	13.8	2.5	2.1	1	1	0	2	2	2	0	AAA	ATPase	domain
AAA_22	PF13401.6	gi|345006653|ref|YP_004809506.1|	-	0.04	14.2	0.0	0.093	13.0	0.0	1.6	1	0	0	1	1	1	0	AAA	domain
Dynamin_N	PF00350.23	gi|345006653|ref|YP_004809506.1|	-	0.067	13.3	0.0	15	5.6	0.0	2.5	2	1	0	3	3	3	0	Dynamin	family
Lambda_CIII	PF02061.16	gi|345006653|ref|YP_004809506.1|	-	0.083	13.0	1.8	4.5	7.4	0.0	3.5	3	0	0	3	3	3	0	Lambda	Phage	CIII
PduV-EutP	PF10662.9	gi|345006653|ref|YP_004809506.1|	-	0.13	12.0	0.0	1.8	8.3	0.0	2.2	2	0	0	2	2	2	0	Ethanolamine	utilisation	-	propanediol	utilisation
FKBP_C	PF00254.28	gi|345006654|ref|YP_004809507.1|	-	1.6e-10	41.1	0.4	4.7e-10	39.7	0.4	1.9	1	1	0	1	1	1	1	FKBP-type	peptidyl-prolyl	cis-trans	isomerase
Flocculin	PF00624.18	gi|345006654|ref|YP_004809507.1|	-	7.7	6.9	5.9	17	5.7	5.9	1.6	1	0	0	1	1	1	0	Flocculin	repeat
AdoMet_Synthase	PF01941.19	gi|345006656|ref|YP_004809509.1|	-	4.4e-168	559.2	7.4	4.9e-168	559.0	7.4	1.0	1	0	0	1	1	1	1	S-adenosylmethionine	synthetase	(AdoMet	synthetase)
DUF21	PF01595.20	gi|345006657|ref|YP_004809510.1|	-	1.1e-28	100.1	0.4	1.7e-28	99.5	0.4	1.2	1	0	0	1	1	1	1	Cyclin	M	transmembrane	N-terminal	domain
CBS	PF00571.28	gi|345006657|ref|YP_004809510.1|	-	5.3e-11	42.8	0.1	3.6e-08	33.7	0.0	2.4	2	0	0	2	2	2	2	CBS	domain
Sigma70_r3	PF04539.16	gi|345006657|ref|YP_004809510.1|	-	0.11	12.6	1.8	0.12	12.4	0.4	1.7	2	0	0	2	2	2	0	Sigma-70	region	3
ThiI	PF02568.14	gi|345006658|ref|YP_004809511.1|	-	7.7e-41	139.8	0.0	1.1e-40	139.3	0.0	1.1	1	0	0	1	1	1	1	Thiamine	biosynthesis	protein	(ThiI)
THUMP	PF02926.17	gi|345006658|ref|YP_004809511.1|	-	9.3e-20	71.2	0.0	6.4e-19	68.5	0.0	2.1	2	0	0	2	2	2	1	THUMP	domain
QueC	PF06508.13	gi|345006658|ref|YP_004809511.1|	-	0.00043	19.8	0.0	0.0097	15.4	0.0	2.2	1	1	0	1	1	1	1	Queuosine	biosynthesis	protein	QueC
tRNA_Me_trans	PF03054.16	gi|345006658|ref|YP_004809511.1|	-	0.011	14.5	0.0	0.018	13.9	0.0	1.2	1	0	0	1	1	1	0	tRNA	methyl	transferase
Arginosuc_synth	PF00764.19	gi|345006658|ref|YP_004809511.1|	-	0.053	12.8	0.0	0.077	12.3	0.0	1.3	1	0	0	1	1	1	0	Arginosuccinate	synthase
RNA_pol_L	PF01193.24	gi|345006658|ref|YP_004809511.1|	-	0.13	11.7	0.1	0.33	10.4	0.0	1.6	2	0	0	2	2	2	0	RNA	polymerase	Rpb3/Rpb11	dimerisation	domain
PALP	PF00291.25	gi|345006660|ref|YP_004809513.1|	-	1.2e-60	205.4	1.0	1.4e-60	205.2	1.0	1.0	1	0	0	1	1	1	1	Pyridoxal-phosphate	dependent	enzyme
ADH_zinc_N	PF00107.26	gi|345006660|ref|YP_004809513.1|	-	0.12	12.4	0.2	0.29	11.1	0.0	1.8	2	1	0	2	2	2	0	Zinc-binding	dehydrogenase
Thioredoxin_9	PF14595.6	gi|345006661|ref|YP_004809514.1|	-	2.6e-05	24.0	0.0	3.2e-05	23.7	0.0	1.2	1	0	0	1	1	1	1	Thioredoxin
AhpC-TSA	PF00578.21	gi|345006661|ref|YP_004809514.1|	-	0.00054	19.9	0.0	0.00066	19.6	0.0	1.2	1	0	0	1	1	1	1	AhpC/TSA	family
Thioredoxin	PF00085.20	gi|345006661|ref|YP_004809514.1|	-	0.00055	19.9	0.0	0.00071	19.5	0.0	1.2	1	0	0	1	1	1	1	Thioredoxin
Redoxin	PF08534.10	gi|345006661|ref|YP_004809514.1|	-	0.012	15.3	0.0	0.033	13.9	0.0	1.6	1	1	1	2	2	2	0	Redoxin
Peptidase_M15_4	PF13539.6	gi|345006661|ref|YP_004809514.1|	-	0.062	13.8	0.0	0.15	12.6	0.0	1.6	1	0	0	1	1	1	0	D-alanyl-D-alanine	carboxypeptidase
DUF953	PF06110.11	gi|345006661|ref|YP_004809514.1|	-	0.19	11.4	0.0	0.23	11.1	0.0	1.2	1	0	0	1	1	1	0	Eukaryotic	protein	of	unknown	function	(DUF953)
Thioredox_DsbH	PF03190.15	gi|345006662|ref|YP_004809515.1|	-	3.4e-69	232.0	0.1	5e-69	231.4	0.1	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function,	DUF255
Thioredoxin_7	PF13899.6	gi|345006662|ref|YP_004809515.1|	-	3.4e-11	43.2	0.0	6.4e-11	42.3	0.0	1.5	1	0	0	1	1	1	1	Thioredoxin-like
Thioredoxin_9	PF14595.6	gi|345006662|ref|YP_004809515.1|	-	0.13	12.1	0.0	0.3	10.8	0.0	1.6	1	0	0	1	1	1	0	Thioredoxin
3-alpha	PF03475.14	gi|345006662|ref|YP_004809515.1|	-	0.4	10.6	2.4	1.8	8.5	0.2	2.9	2	0	0	2	2	2	0	3-alpha	domain
Usp	PF00582.26	gi|345006663|ref|YP_004809516.1|	-	1.8e-18	67.4	1.5	5.3e-18	65.9	1.5	1.7	1	1	0	1	1	1	1	Universal	stress	protein	family
GARS_A	PF01071.19	gi|345006664|ref|YP_004809517.1|	-	2.2e-46	158.1	0.2	3.8e-45	154.1	0.2	2.4	1	1	0	1	1	1	1	Phosphoribosylglycinamide	synthetase,	ATP-grasp	(A)	domain
GARS_N	PF02844.15	gi|345006664|ref|YP_004809517.1|	-	5.1e-21	75.3	0.4	1.1e-20	74.1	0.4	1.6	1	0	0	1	1	1	1	Phosphoribosylglycinamide	synthetase,	N	domain
GARS_C	PF02843.16	gi|345006664|ref|YP_004809517.1|	-	2e-12	47.2	2.5	2.9e-12	46.7	0.9	2.2	2	0	0	2	2	2	1	Phosphoribosylglycinamide	synthetase,	C	domain
ATP-grasp_3	PF02655.14	gi|345006664|ref|YP_004809517.1|	-	5.6e-05	23.2	0.0	0.00022	21.3	0.0	1.8	1	1	0	1	1	1	1	ATP-grasp	domain
CPSase_L_D2	PF02786.17	gi|345006664|ref|YP_004809517.1|	-	0.0011	18.6	0.0	0.0023	17.5	0.0	1.5	1	0	0	1	1	1	1	Carbamoyl-phosphate	synthase	L	chain,	ATP	binding	domain
ATP-grasp	PF02222.22	gi|345006664|ref|YP_004809517.1|	-	0.0055	16.3	0.1	0.014	14.9	0.0	1.8	2	0	0	2	2	2	1	ATP-grasp	domain
ATP-grasp_4	PF13535.6	gi|345006664|ref|YP_004809517.1|	-	0.044	13.4	0.1	0.14	11.8	0.1	1.9	1	1	0	1	1	1	0	ATP-grasp	domain
ATPgrasp_ST	PF14397.6	gi|345006664|ref|YP_004809517.1|	-	0.065	12.5	0.0	0.12	11.6	0.0	1.4	1	0	0	1	1	1	0	Sugar-transfer	associated	ATP-grasp
zinc_ribbon_4	PF13717.6	gi|345006665|ref|YP_004809518.1|	-	0.00027	20.8	4.7	0.0018	18.2	1.0	1.7	1	1	1	2	2	2	2	zinc-ribbon	domain
PhnA_Zn_Ribbon	PF08274.12	gi|345006665|ref|YP_004809518.1|	-	0.00069	19.5	4.2	0.032	14.2	0.6	2.1	2	0	0	2	2	2	2	PhnA	Zinc-Ribbon
DUF4379	PF14311.6	gi|345006665|ref|YP_004809518.1|	-	0.0023	18.3	0.9	0.0031	17.8	0.9	1.2	1	0	0	1	1	1	1	Probable	Zinc-ribbon	domain
HypA	PF01155.19	gi|345006665|ref|YP_004809518.1|	-	0.0034	17.4	0.2	0.0034	17.4	0.2	1.1	1	0	0	1	1	1	1	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
Zn_Tnp_IS1	PF03811.13	gi|345006665|ref|YP_004809518.1|	-	0.0061	16.3	0.3	0.43	10.3	0.1	2.2	2	0	0	2	2	2	1	InsA	N-terminal	domain
HNH	PF01844.23	gi|345006665|ref|YP_004809518.1|	-	0.016	15.4	1.6	2.2	8.5	0.1	2.2	2	0	0	2	2	2	0	HNH	endonuclease
zf_UBZ	PF18439.1	gi|345006665|ref|YP_004809518.1|	-	0.018	14.6	1.2	1.5	8.5	0.1	2.2	2	0	0	2	2	2	0	Ubiquitin-Binding	Zinc	Finger
Zn-ribbon_8	PF09723.10	gi|345006665|ref|YP_004809518.1|	-	0.027	14.6	3.3	0.065	13.4	3.3	1.7	1	1	0	1	1	1	0	Zinc	ribbon	domain
Anti-TRAP	PF15777.5	gi|345006665|ref|YP_004809518.1|	-	0.027	14.4	0.1	0.034	14.1	0.1	1.3	1	0	0	1	1	1	0	Tryptophan	RNA-binding	attenuator	protein	inhibitory	protein
TackOD1	PF18551.1	gi|345006665|ref|YP_004809518.1|	-	0.027	14.1	0.2	0.031	13.9	0.2	1.1	1	0	0	1	1	1	0	Thaumarchaeal	output	domain	1
TF_Zn_Ribbon	PF08271.12	gi|345006665|ref|YP_004809518.1|	-	0.027	14.0	1.0	1.8	8.2	0.1	2.2	2	0	0	2	2	2	0	TFIIB	zinc-binding
Stc1	PF12898.7	gi|345006665|ref|YP_004809518.1|	-	0.028	14.9	0.7	0.038	14.5	0.7	1.2	1	1	0	1	1	1	0	Stc1	domain
zinc-ribbons_6	PF07191.12	gi|345006665|ref|YP_004809518.1|	-	0.041	13.9	1.6	0.064	13.2	1.6	1.4	1	1	0	1	1	1	0	zinc-ribbons
Glutaredoxin	PF00462.24	gi|345006665|ref|YP_004809518.1|	-	0.045	14.0	0.2	0.44	10.8	0.0	2.0	2	0	0	2	2	2	0	Glutaredoxin
zf_Rg	PF17915.1	gi|345006665|ref|YP_004809518.1|	-	0.052	13.0	0.6	1.5	8.3	0.1	2.2	2	0	0	2	2	2	0	Reverse	gyrase	zinc	finger
Ribosomal_S27e	PF01667.17	gi|345006665|ref|YP_004809518.1|	-	0.066	12.9	0.5	2.1	8.1	0.1	2.1	2	0	0	2	2	2	0	Ribosomal	protein	S27
zinc_ribbon_5	PF13719.6	gi|345006665|ref|YP_004809518.1|	-	0.086	12.6	0.6	1.5	8.6	0.1	2.1	2	0	0	2	2	2	0	zinc-ribbon	domain
zinc_ribbon_9	PF14369.6	gi|345006665|ref|YP_004809518.1|	-	0.72	10.2	6.3	13	6.2	0.4	2.2	1	1	1	2	2	2	0	zinc-ribbon
Rubredoxin	PF00301.20	gi|345006665|ref|YP_004809518.1|	-	1.8	8.6	5.7	1.5	8.9	0.4	2.2	1	1	1	2	2	2	0	Rubredoxin
ECH_1	PF00378.20	gi|345006667|ref|YP_004809520.1|	-	2.8e-69	233.2	0.0	3.2e-69	233.0	0.0	1.0	1	0	0	1	1	1	1	Enoyl-CoA	hydratase/isomerase
ECH_2	PF16113.5	gi|345006667|ref|YP_004809520.1|	-	1.5e-37	129.9	0.0	2.3e-32	112.8	0.0	2.0	1	1	1	2	2	2	2	Enoyl-CoA	hydratase/isomerase
3HCDH_N	PF02737.18	gi|345006668|ref|YP_004809521.1|	-	4.4e-60	202.6	2.2	6.3e-60	202.1	2.2	1.2	1	0	0	1	1	1	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
3HCDH	PF00725.22	gi|345006668|ref|YP_004809521.1|	-	2.3e-28	98.6	0.0	6.2e-28	97.3	0.0	1.7	1	0	0	1	1	1	1	3-hydroxyacyl-CoA	dehydrogenase,	C-terminal	domain
NAD_binding_2	PF03446.15	gi|345006668|ref|YP_004809521.1|	-	7.1e-06	26.3	1.6	7.1e-06	26.3	1.6	2.3	2	1	0	2	2	2	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
NAD_Gly3P_dh_N	PF01210.23	gi|345006668|ref|YP_004809521.1|	-	4.4e-05	23.5	0.3	0.00014	21.9	0.1	1.9	2	1	0	2	2	2	1	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
AlaDh_PNT_C	PF01262.21	gi|345006668|ref|YP_004809521.1|	-	0.0046	16.3	0.3	0.026	13.8	0.5	2.0	2	0	0	2	2	2	1	Alanine	dehydrogenase/PNT,	C-terminal	domain
UDPG_MGDP_dh_N	PF03721.14	gi|345006668|ref|YP_004809521.1|	-	0.0056	16.3	0.2	0.01	15.4	0.2	1.5	1	0	0	1	1	1	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
Pyr_redox_2	PF07992.14	gi|345006668|ref|YP_004809521.1|	-	0.042	13.1	0.3	0.042	13.1	0.3	1.4	2	0	0	2	2	2	0	Pyridine	nucleotide-disulphide	oxidoreductase
F420_oxidored	PF03807.17	gi|345006668|ref|YP_004809521.1|	-	0.083	13.5	7.9	0.062	13.9	3.3	2.7	2	1	0	2	2	2	0	NADP	oxidoreductase	coenzyme	F420-dependent
Rossmann-like	PF10727.9	gi|345006668|ref|YP_004809521.1|	-	2.2	8.2	7.0	0.15	11.9	0.6	2.3	2	1	1	3	3	3	0	Rossmann-like	domain
DUF35_N	PF12172.8	gi|345006669|ref|YP_004809522.1|	-	3e-07	30.2	3.0	7e-07	29.0	3.0	1.6	1	0	0	1	1	1	1	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
ACP_syn_III_C	PF08541.10	gi|345006669|ref|YP_004809522.1|	-	0.0037	17.4	0.1	0.0082	16.3	0.1	1.6	1	0	0	1	1	1	1	3-Oxoacyl-[acyl-carrier-protein	(ACP)]	synthase	III	C	terminal
OB_aCoA_assoc	PF01796.17	gi|345006669|ref|YP_004809522.1|	-	0.25	11.4	1.9	0.72	9.9	1.9	1.9	1	0	0	1	1	1	0	DUF35	OB-fold	domain,	acyl-CoA-associated
Thiolase_N	PF00108.23	gi|345006670|ref|YP_004809523.1|	-	1.6e-21	76.9	2.1	2.2e-21	76.4	0.1	2.2	2	1	0	2	2	2	1	Thiolase,	N-terminal	domain
Thiolase_C	PF02803.18	gi|345006670|ref|YP_004809523.1|	-	2e-08	33.9	0.2	7.3e-08	32.1	0.2	1.9	1	1	0	1	1	1	1	Thiolase,	C-terminal	domain
ketoacyl-synt	PF00109.26	gi|345006670|ref|YP_004809523.1|	-	2.8e-08	33.6	1.7	7.1e-08	32.3	1.7	1.6	1	0	0	1	1	1	1	Beta-ketoacyl	synthase,	N-terminal	domain
ACP_syn_III	PF08545.10	gi|345006670|ref|YP_004809523.1|	-	0.0058	16.5	5.6	0.044	13.6	0.1	3.0	3	0	0	3	3	3	2	3-Oxoacyl-[acyl-carrier-protein	(ACP)]	synthase	III
CSD	PF00313.22	gi|345006671|ref|YP_004809524.1|	-	1.2e-19	69.9	0.2	1.3e-19	69.8	0.2	1.0	1	0	0	1	1	1	1	'Cold-shock'	DNA-binding	domain
S1-like	PF14444.6	gi|345006671|ref|YP_004809524.1|	-	0.0023	17.9	0.5	0.0032	17.4	0.5	1.4	1	1	0	1	1	1	1	S1-like
OB_RNB	PF08206.11	gi|345006671|ref|YP_004809524.1|	-	0.083	12.6	2.0	0.14	11.8	2.0	1.4	1	0	0	1	1	1	0	Ribonuclease	B	OB	domain
OrfB_Zn_ribbon	PF07282.11	gi|345006673|ref|YP_004809526.1|	-	0.00026	20.9	0.8	0.00029	20.7	0.8	1.0	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
Zn-ribbon_8	PF09723.10	gi|345006673|ref|YP_004809526.1|	-	0.00027	21.0	2.0	0.0004	20.4	2.0	1.3	1	1	0	1	1	1	1	Zinc	ribbon	domain
DUF1272	PF06906.11	gi|345006673|ref|YP_004809526.1|	-	0.00033	20.7	0.8	0.00042	20.4	0.8	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1272)
HypA	PF01155.19	gi|345006673|ref|YP_004809526.1|	-	0.0004	20.4	0.4	0.0004	20.4	0.4	1.0	1	0	0	1	1	1	1	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
Zn_ribbon_SprT	PF17283.2	gi|345006673|ref|YP_004809526.1|	-	0.00065	19.5	1.2	0.34	10.9	0.1	2.1	2	0	0	2	2	2	2	SprT-like	zinc	ribbon	domain
DZR	PF12773.7	gi|345006673|ref|YP_004809526.1|	-	0.00082	19.3	0.6	0.00096	19.1	0.6	1.1	1	0	0	1	1	1	1	Double	zinc	ribbon
zf-IS66	PF13005.7	gi|345006673|ref|YP_004809526.1|	-	0.0014	19.0	1.4	0.14	12.6	0.2	2.1	2	0	0	2	2	2	1	zinc-finger	binding	domain	of	transposase	IS66
zf_UBZ	PF18439.1	gi|345006673|ref|YP_004809526.1|	-	0.0016	18.0	0.9	0.24	11.0	0.1	2.1	2	0	0	2	2	2	1	Ubiquitin-Binding	Zinc	Finger
zinc-ribbons_6	PF07191.12	gi|345006673|ref|YP_004809526.1|	-	0.0019	18.1	0.1	0.0022	17.9	0.1	1.1	1	0	0	1	1	1	1	zinc-ribbons
TackOD1	PF18551.1	gi|345006673|ref|YP_004809526.1|	-	0.0054	16.4	0.2	0.0056	16.4	0.2	1.0	1	0	0	1	1	1	1	Thaumarchaeal	output	domain	1
Nudix_N_2	PF14803.6	gi|345006673|ref|YP_004809526.1|	-	0.0064	16.4	3.2	0.13	12.2	3.3	2.1	1	1	0	1	1	1	1	Nudix	N-terminal
DUF4776	PF16003.5	gi|345006673|ref|YP_004809526.1|	-	0.0085	15.1	0.1	0.0085	15.1	0.1	1.0	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4776)
zf_Rg	PF17915.1	gi|345006673|ref|YP_004809526.1|	-	0.01	15.2	0.5	0.021	14.2	0.0	1.7	2	0	0	2	2	2	0	Reverse	gyrase	zinc	finger
RNHCP	PF12647.7	gi|345006673|ref|YP_004809526.1|	-	0.011	15.7	0.3	0.012	15.6	0.3	1.1	1	0	0	1	1	1	0	RNHCP	domain
Prok-RING_1	PF14446.6	gi|345006673|ref|YP_004809526.1|	-	0.024	14.5	0.3	0.027	14.4	0.3	1.1	1	0	0	1	1	1	0	Prokaryotic	RING	finger	family	1
DUF2039	PF10217.9	gi|345006673|ref|YP_004809526.1|	-	0.026	14.9	0.1	0.029	14.7	0.1	1.1	1	0	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2039)
Nop10p	PF04135.12	gi|345006673|ref|YP_004809526.1|	-	0.03	14.4	0.3	0.035	14.2	0.3	1.2	1	0	0	1	1	1	0	Nucleolar	RNA-binding	protein,	Nop10p	family
Zn_Tnp_IS1595	PF12760.7	gi|345006673|ref|YP_004809526.1|	-	0.033	14.1	4.1	0.69	9.9	0.2	2.0	1	1	1	2	2	2	0	Transposase	zinc-ribbon	domain
DUF2688	PF10892.8	gi|345006673|ref|YP_004809526.1|	-	0.042	13.3	1.8	0.042	13.3	1.8	1.8	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF2688)
DUF2757	PF10955.8	gi|345006673|ref|YP_004809526.1|	-	0.043	14.1	0.9	0.63	10.3	0.1	2.0	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF2757)
zf-RRN7	PF11781.8	gi|345006673|ref|YP_004809526.1|	-	0.059	13.1	4.2	1.2	8.9	0.3	2.1	2	0	0	2	2	2	0	Zinc-finger	of	RNA-polymerase	I-specific	TFIIB,	Rrn7
zinc_ribbon_9	PF14369.6	gi|345006673|ref|YP_004809526.1|	-	0.068	13.4	2.1	0.1	12.9	2.1	1.4	1	1	0	1	1	1	0	zinc-ribbon
zf-C2H2_4	PF13894.6	gi|345006673|ref|YP_004809526.1|	-	0.093	13.6	1.6	5.9	8.0	0.2	2.1	2	0	0	2	2	2	0	C2H2-type	zinc	finger
TF_Zn_Ribbon	PF08271.12	gi|345006673|ref|YP_004809526.1|	-	0.11	12.0	3.7	0.58	9.7	3.7	1.9	1	1	0	1	1	1	0	TFIIB	zinc-binding
zf-ribbon_3	PF13248.6	gi|345006673|ref|YP_004809526.1|	-	0.11	11.9	3.8	0.96	8.9	3.8	2.0	1	1	0	1	1	1	0	zinc-ribbon	domain
YhfH	PF14149.6	gi|345006673|ref|YP_004809526.1|	-	0.17	11.9	2.3	3.3	7.8	1.7	2.1	1	1	1	2	2	2	0	YhfH-like	protein
zf-C2H2	PF00096.26	gi|345006673|ref|YP_004809526.1|	-	0.21	12.1	2.4	9.8	6.9	0.2	2.1	2	0	0	2	2	2	0	Zinc	finger,	C2H2	type
zf-HYPF	PF07503.12	gi|345006673|ref|YP_004809526.1|	-	0.64	9.8	5.7	7.5	6.4	0.2	2.3	2	1	0	2	2	2	0	HypF	finger
Rubredoxin_2	PF18073.1	gi|345006673|ref|YP_004809526.1|	-	0.89	9.3	5.5	5.4	6.8	5.5	1.9	1	1	0	1	1	1	0	Rubredoxin	metal	binding	domain
zf-Mss51	PF13824.6	gi|345006673|ref|YP_004809526.1|	-	0.97	9.6	4.0	11	6.2	0.1	2.1	1	1	1	2	2	2	0	Zinc-finger	of	mitochondrial	splicing	suppressor	51
zf-ISL3	PF14690.6	gi|345006673|ref|YP_004809526.1|	-	1.2	9.8	6.0	5.1	7.9	0.6	2.1	1	1	1	2	2	2	0	zinc-finger	of	transposase	IS204/IS1001/IS1096/IS1165
MaoC_dehydratas	PF01575.19	gi|345006674|ref|YP_004809527.1|	-	1.4e-14	53.7	0.1	1.8e-14	53.3	0.1	1.1	1	0	0	1	1	1	1	MaoC	like	domain
MaoC_dehydrat_N	PF13452.6	gi|345006674|ref|YP_004809527.1|	-	9.8e-06	25.7	0.5	3.2e-05	24.1	0.5	1.7	1	1	0	1	1	1	1	N-terminal	half	of	MaoC	dehydratase
DoxX	PF07681.12	gi|345006676|ref|YP_004809529.1|	-	2.7e-09	37.5	10.3	2.7e-09	37.5	10.3	2.3	1	1	1	2	2	2	1	DoxX
DoxD	PF04173.13	gi|345006676|ref|YP_004809529.1|	-	0.00075	19.4	3.9	0.0012	18.7	3.9	1.4	1	1	0	1	1	1	1	TQO	small	subunit	DoxD
HTH_10	PF04967.12	gi|345006677|ref|YP_004809530.1|	-	2.1e-17	62.7	0.2	3.5e-17	62.0	0.2	1.4	1	0	0	1	1	1	1	HTH	DNA	binding	domain
BAT	PF15915.5	gi|345006677|ref|YP_004809530.1|	-	1.1e-07	31.8	2.3	1.1e-07	31.8	2.3	1.5	2	0	0	2	2	2	1	GAF	and	HTH_10	associated	domain
HTH_24	PF13412.6	gi|345006677|ref|YP_004809530.1|	-	0.021	14.4	0.0	0.068	12.7	0.0	1.8	2	0	0	2	2	2	0	Winged	helix-turn-helix	DNA-binding
HTH_AsnC-type	PF13404.6	gi|345006677|ref|YP_004809530.1|	-	0.022	14.6	0.4	0.084	12.7	0.4	2.0	1	0	0	1	1	1	0	AsnC-type	helix-turn-helix	domain
DUF302	PF03625.14	gi|345006679|ref|YP_004809532.1|	-	3.4e-14	52.5	0.0	5.4e-14	51.8	0.0	1.3	1	0	0	1	1	1	1	Domain	of	unknown	function	DUF302
5_nucleotid_C	PF02872.18	gi|345006681|ref|YP_004809534.1|	-	2.4e-18	66.8	0.0	4.3e-18	66.0	0.0	1.3	1	0	0	1	1	1	1	5'-nucleotidase,	C-terminal	domain
Metallophos	PF00149.28	gi|345006681|ref|YP_004809534.1|	-	5.7e-06	27.0	0.6	9.6e-06	26.2	0.6	1.4	1	0	0	1	1	1	1	Calcineurin-like	phosphoesterase
Lactamase_B	PF00753.27	gi|345006682|ref|YP_004809535.1|	-	3.2e-13	50.1	5.4	6.1e-13	49.2	5.4	1.4	1	0	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Rhodanese	PF00581.20	gi|345006682|ref|YP_004809535.1|	-	9.2e-12	45.4	0.0	2.3e-11	44.1	0.0	1.7	1	0	0	1	1	1	1	Rhodanese-like	domain
Lactamase_B_2	PF12706.7	gi|345006682|ref|YP_004809535.1|	-	0.00038	20.0	0.4	0.00088	18.8	0.3	1.6	1	1	0	1	1	1	1	Beta-lactamase	superfamily	domain
HyaE	PF07449.11	gi|345006684|ref|YP_004809537.1|	-	0.073	13.0	0.1	0.14	12.1	0.1	1.4	1	0	0	1	1	1	0	Hydrogenase-1	expression	protein	HyaE
MFS_1	PF07690.16	gi|345006685|ref|YP_004809538.1|	-	1.2e-19	70.5	98.0	3.7e-16	59.0	56.6	2.0	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
PaaA_PaaC	PF05138.12	gi|345006686|ref|YP_004809539.1|	-	5.5e-71	238.8	0.1	7.3e-71	238.4	0.1	1.0	1	0	0	1	1	1	1	Phenylacetic	acid	catabolic	protein
PaaB	PF06243.11	gi|345006687|ref|YP_004809540.1|	-	2.5e-19	69.3	0.1	4e-19	68.6	0.1	1.3	1	0	0	1	1	1	1	Phenylacetic	acid	degradation	B
PaaA_PaaC	PF05138.12	gi|345006688|ref|YP_004809541.1|	-	1.8e-62	210.9	2.3	2.3e-62	210.5	2.3	1.0	1	0	0	1	1	1	1	Phenylacetic	acid	catabolic	protein
MiaE_2	PF13794.6	gi|345006688|ref|YP_004809541.1|	-	0.0018	18.0	0.4	0.0026	17.5	0.4	1.4	1	0	0	1	1	1	1	tRNA-(MS[2]IO[6]A)-hydroxylase	(MiaE)-like
FliT	PF05400.13	gi|345006688|ref|YP_004809541.1|	-	0.0052	17.6	1.1	0.6	11.0	0.1	2.7	2	0	0	2	2	2	1	Flagellar	protein	FliT
FeS_assembly_P	PF01883.19	gi|345006689|ref|YP_004809542.1|	-	6.6e-16	58.2	0.2	9.1e-16	57.8	0.2	1.2	1	0	0	1	1	1	1	Iron-sulfur	cluster	assembly	protein
Zn-ribbon_8	PF09723.10	gi|345006690|ref|YP_004809543.1|	-	0.0005	20.1	2.6	0.029	14.5	0.1	2.2	2	0	0	2	2	2	2	Zinc	ribbon	domain
zf-ribbon_3	PF13248.6	gi|345006690|ref|YP_004809543.1|	-	0.0038	16.6	3.0	0.017	14.5	0.2	2.2	2	0	0	2	2	2	1	zinc-ribbon	domain
zf-ISL3	PF14690.6	gi|345006690|ref|YP_004809543.1|	-	0.053	14.2	3.7	0.078	13.7	3.8	1.4	1	1	0	1	1	1	0	zinc-finger	of	transposase	IS204/IS1001/IS1096/IS1165
zf-CHCC	PF10276.9	gi|345006690|ref|YP_004809543.1|	-	0.086	12.9	0.3	0.086	12.9	0.3	2.4	3	0	0	3	3	3	0	Zinc-finger	domain
TF_Zn_Ribbon	PF08271.12	gi|345006690|ref|YP_004809543.1|	-	0.67	9.5	8.2	0.37	10.3	5.8	2.0	1	1	1	2	2	2	0	TFIIB	zinc-binding
zinc_ribbon_9	PF14369.6	gi|345006690|ref|YP_004809543.1|	-	4.5	7.6	8.9	0.44	10.8	0.7	2.2	1	1	1	2	2	2	0	zinc-ribbon
DUF3007	PF11460.8	gi|345006691|ref|YP_004809544.1|	-	0.11	12.7	0.7	0.13	12.5	0.7	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3007)
DUF2298	PF10060.9	gi|345006694|ref|YP_004809547.1|	-	8e-143	476.7	28.0	8e-143	476.7	28.0	1.9	2	0	0	2	2	2	1	Uncharacterized	membrane	protein	(DUF2298)
DUF2206	PF09971.9	gi|345006694|ref|YP_004809547.1|	-	0.0091	14.8	0.0	0.022	13.5	0.0	1.6	1	0	0	1	1	1	1	Predicted	membrane	protein	(DUF2206)
ABC_tran	PF00005.27	gi|345006695|ref|YP_004809548.1|	-	5.3e-16	59.4	0.0	1.3e-15	58.1	0.0	1.6	1	1	0	1	1	1	1	ABC	transporter
SMC_N	PF02463.19	gi|345006695|ref|YP_004809548.1|	-	4.3e-06	26.3	0.6	0.019	14.4	0.1	2.2	2	0	0	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
AAA	PF00004.29	gi|345006695|ref|YP_004809548.1|	-	7.3e-05	23.2	0.0	0.1	13.1	0.0	2.3	2	0	0	2	2	2	2	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_21	PF13304.6	gi|345006695|ref|YP_004809548.1|	-	0.00018	21.4	0.4	0.068	13.0	0.1	2.2	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_5	PF07728.14	gi|345006695|ref|YP_004809548.1|	-	0.0043	17.0	0.3	1.4	8.9	0.0	2.4	2	0	0	2	2	2	2	AAA	domain	(dynein-related	subfamily)
AAA_29	PF13555.6	gi|345006695|ref|YP_004809548.1|	-	0.0059	16.3	0.1	0.011	15.4	0.1	1.3	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_28	PF13521.6	gi|345006695|ref|YP_004809548.1|	-	0.025	14.8	0.1	0.25	11.6	0.0	2.3	2	1	0	2	2	2	0	AAA	domain
AAA_18	PF13238.6	gi|345006695|ref|YP_004809548.1|	-	0.047	14.2	0.0	0.22	12.0	0.0	2.1	2	1	0	2	2	2	0	AAA	domain
AAA_22	PF13401.6	gi|345006695|ref|YP_004809548.1|	-	0.073	13.3	1.0	1.2	9.4	0.0	2.5	2	1	0	2	2	2	0	AAA	domain
DUF4928	PF16280.5	gi|345006695|ref|YP_004809548.1|	-	0.11	11.7	0.0	0.17	11.1	0.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4928)
AAA_24	PF13479.6	gi|345006695|ref|YP_004809548.1|	-	0.14	11.9	0.0	0.24	11.1	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
AAA_15	PF13175.6	gi|345006695|ref|YP_004809548.1|	-	0.18	11.5	0.2	0.56	9.9	0.0	1.6	1	1	1	2	2	2	0	AAA	ATPase	domain
AAA_23	PF13476.6	gi|345006695|ref|YP_004809548.1|	-	0.53	10.7	3.9	0.52	10.8	0.3	2.1	2	0	0	2	2	2	0	AAA	domain
AAA_16	PF13191.6	gi|345006695|ref|YP_004809548.1|	-	8.3	6.8	6.0	84	3.5	6.0	2.6	1	1	0	1	1	1	0	AAA	ATPase	domain
UPF0051	PF01458.17	gi|345006696|ref|YP_004809549.1|	-	1.3e-72	244.0	0.7	1.7e-72	243.6	0.7	1.2	1	0	0	1	1	1	1	Uncharacterized	protein	family	(UPF0051)
UPF0051	PF01458.17	gi|345006697|ref|YP_004809550.1|	-	1.5e-61	207.9	0.4	1.8e-61	207.6	0.4	1.1	1	0	0	1	1	1	1	Uncharacterized	protein	family	(UPF0051)
MFS_1	PF07690.16	gi|345006699|ref|YP_004809552.1|	-	6.2e-36	124.1	61.6	1.6e-19	70.1	29.5	2.0	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
TagF_N	PF09867.9	gi|345006699|ref|YP_004809552.1|	-	0.084	12.9	0.1	0.18	11.8	0.1	1.5	1	0	0	1	1	1	0	TagF	N-terminal	domain,	Type	VI	secretion	system-associated
Rubrerythrin	PF02915.17	gi|345006700|ref|YP_004809553.1|	-	7.2e-06	26.4	3.5	1.5e-05	25.4	3.5	1.5	1	0	0	1	1	1	1	Rubrerythrin
ANAPC16	PF17256.2	gi|345006700|ref|YP_004809553.1|	-	0.061	13.7	0.9	14	6.2	0.1	2.5	2	0	0	2	2	2	0	Anaphase-promoting	complex,	subunit	16
DUF445	PF04286.12	gi|345006700|ref|YP_004809553.1|	-	0.078	12.8	0.3	0.084	12.7	0.3	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF445)
FAD-SLDH	PF12318.8	gi|345006700|ref|YP_004809553.1|	-	0.083	13.0	0.2	0.19	11.8	0.1	1.6	2	0	0	2	2	2	0	Membrane	bound	FAD	containing	D-sorbitol	dehydrogenase
Ferritin_2	PF13668.6	gi|345006700|ref|YP_004809553.1|	-	0.2	11.9	2.8	0.46	10.7	0.3	2.0	2	0	0	2	2	2	0	Ferritin-like	domain
APG6_N	PF17675.1	gi|345006700|ref|YP_004809553.1|	-	2.8	8.5	10.4	3.5	8.2	1.6	2.2	2	0	0	2	2	2	0	Apg6	coiled-coil	region
Fe_dep_repress	PF01325.19	gi|345006701|ref|YP_004809554.1|	-	1e-16	60.8	0.0	2e-16	59.9	0.0	1.5	1	0	0	1	1	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
Fe_dep_repr_C	PF02742.15	gi|345006701|ref|YP_004809554.1|	-	9.9e-11	41.6	0.2	2.2e-10	40.5	0.2	1.6	1	0	0	1	1	1	1	Iron	dependent	repressor,	metal	binding	and	dimerisation	domain
HTH_27	PF13463.6	gi|345006701|ref|YP_004809554.1|	-	2.2e-05	24.8	0.0	4e-05	24.0	0.0	1.4	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
MarR_2	PF12802.7	gi|345006701|ref|YP_004809554.1|	-	0.00026	20.8	0.0	0.00046	20.0	0.0	1.4	1	0	0	1	1	1	1	MarR	family
TrmB	PF01978.19	gi|345006701|ref|YP_004809554.1|	-	0.00072	19.4	0.0	0.0016	18.3	0.0	1.7	1	1	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_24	PF13412.6	gi|345006701|ref|YP_004809554.1|	-	0.008	15.7	0.0	0.015	14.8	0.0	1.6	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_Crp_2	PF13545.6	gi|345006701|ref|YP_004809554.1|	-	0.015	15.2	0.0	0.032	14.2	0.0	1.5	1	0	0	1	1	1	0	Crp-like	helix-turn-helix	domain
HTH_20	PF12840.7	gi|345006701|ref|YP_004809554.1|	-	0.034	14.2	0.0	0.08	13.0	0.0	1.6	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_IclR	PF09339.10	gi|345006701|ref|YP_004809554.1|	-	0.074	12.9	0.0	0.13	12.0	0.0	1.4	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
MarR	PF01047.22	gi|345006701|ref|YP_004809554.1|	-	0.091	12.7	0.0	0.17	11.8	0.0	1.4	1	0	0	1	1	1	0	MarR	family
HTH_13	PF11972.8	gi|345006701|ref|YP_004809554.1|	-	0.15	12.1	0.0	0.3	11.2	0.0	1.4	1	0	0	1	1	1	0	HTH	DNA	binding	domain
HNH	PF01844.23	gi|345006703|ref|YP_004809556.1|	-	6.5e-12	45.4	6.9	1.2e-11	44.6	6.9	1.5	1	0	0	1	1	1	1	HNH	endonuclease
HNH_5	PF14279.6	gi|345006703|ref|YP_004809556.1|	-	1.7e-08	34.2	2.4	3.8e-08	33.1	2.4	1.6	1	1	0	1	1	1	1	HNH	endonuclease
PHD	PF00628.29	gi|345006703|ref|YP_004809556.1|	-	0.002	18.0	1.0	0.23	11.4	0.0	2.4	2	0	0	2	2	2	2	PHD-finger
Zn_ribbon_SprT	PF17283.2	gi|345006703|ref|YP_004809556.1|	-	0.041	13.8	0.5	0.1	12.5	0.5	1.7	1	0	0	1	1	1	0	SprT-like	zinc	ribbon	domain
SRTM1	PF15872.5	gi|345006703|ref|YP_004809556.1|	-	0.056	13.6	0.0	0.071	13.3	0.0	1.2	1	0	0	1	1	1	0	Serine-rich	and	transmembrane	domain-containing	protein	1
Cytochrome_C7	PF14522.6	gi|345006703|ref|YP_004809556.1|	-	0.11	12.5	3.7	0.44	10.6	3.8	1.8	1	1	0	1	1	1	0	Cytochrome	c7	and	related	cytochrome	c
DNA_RNApol_7kD	PF03604.13	gi|345006703|ref|YP_004809556.1|	-	0.33	10.7	3.3	0.67	9.7	0.7	2.2	2	0	0	2	2	2	0	DNA	directed	RNA	polymerase,	7	kDa	subunit
Zn-ribbon_8	PF09723.10	gi|345006703|ref|YP_004809556.1|	-	0.64	10.2	3.4	9.3	6.5	1.2	2.5	2	0	0	2	2	2	0	Zinc	ribbon	domain
RHH_1	PF01402.21	gi|345006705|ref|YP_004809558.1|	-	0.0071	16.3	0.3	0.031	14.2	0.0	2.0	2	0	0	2	2	2	1	Ribbon-helix-helix	protein,	copG	family
PSK_trans_fac	PF07704.11	gi|345006705|ref|YP_004809558.1|	-	0.012	16.4	0.9	0.014	16.1	0.9	1.2	1	0	0	1	1	1	0	Rv0623-like	transcription	factor
DUF4815	PF16075.5	gi|345006706|ref|YP_004809559.1|	-	0.055	11.8	0.0	0.058	11.7	0.0	1.0	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4815)
TIR_2	PF13676.6	gi|345006708|ref|YP_004809561.1|	-	0.1	13.2	0.0	0.16	12.6	0.0	1.3	1	0	0	1	1	1	0	TIR	domain
DUF262	PF03235.14	gi|345006709|ref|YP_004809562.1|	-	1e-23	84.7	0.4	1e-23	84.7	0.4	2.2	2	1	0	2	2	2	1	Protein	of	unknown	function	DUF262
DUF1524	PF07510.11	gi|345006709|ref|YP_004809562.1|	-	1.1e-08	35.1	0.4	1.1e-08	35.1	0.4	1.7	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF1524)
HNH_4	PF13395.6	gi|345006709|ref|YP_004809562.1|	-	0.0016	18.3	0.0	0.0034	17.3	0.0	1.5	1	0	0	1	1	1	1	HNH	endonuclease
Pr_beta_C	PF12465.8	gi|345006709|ref|YP_004809562.1|	-	0.25	10.8	0.6	1.2	8.6	0.0	2.2	2	0	0	2	2	2	0	Proteasome	beta	subunits	C	terminal
HTH_10	PF04967.12	gi|345006711|ref|YP_004809564.1|	-	2.2e-15	56.2	0.0	3.3e-15	55.6	0.0	1.3	1	0	0	1	1	1	1	HTH	DNA	binding	domain
BAT	PF15915.5	gi|345006711|ref|YP_004809564.1|	-	1.2e-06	28.5	0.0	1.7e-06	28.0	0.0	1.2	1	0	0	1	1	1	1	GAF	and	HTH_10	associated	domain
Sigma70_r4	PF04545.16	gi|345006711|ref|YP_004809564.1|	-	4.1e-05	23.0	0.5	0.00011	21.6	0.5	1.7	1	0	0	1	1	1	1	Sigma-70,	region	4
HalOD1	PF18545.1	gi|345006712|ref|YP_004809565.1|	-	6.1e-24	84.1	1.7	6.1e-24	84.1	1.7	1.4	2	0	0	2	2	2	1	Halobacterial	output	domain	1
CSD	PF00313.22	gi|345006713|ref|YP_004809566.1|	-	1e-19	70.1	0.6	1.1e-19	70.0	0.6	1.0	1	0	0	1	1	1	1	'Cold-shock'	DNA-binding	domain
Rho_RNA_bind	PF07497.12	gi|345006713|ref|YP_004809566.1|	-	0.027	14.3	0.0	0.03	14.2	0.0	1.1	1	0	0	1	1	1	0	Rho	termination	factor,	RNA-binding	domain
Peptidase_M10_C	PF08548.11	gi|345006713|ref|YP_004809566.1|	-	0.036	13.9	0.4	0.039	13.9	0.4	1.1	1	0	0	1	1	1	0	Peptidase	M10	serralysin	C	terminal
S1-like	PF14444.6	gi|345006713|ref|YP_004809566.1|	-	0.047	13.6	0.4	0.062	13.2	0.4	1.3	1	1	0	1	1	1	0	S1-like
OB_RNB	PF08206.11	gi|345006713|ref|YP_004809566.1|	-	0.057	13.1	2.8	0.06	13.0	2.8	1.4	1	1	0	1	1	1	0	Ribonuclease	B	OB	domain
DUF3179	PF11376.8	gi|345006715|ref|YP_004809568.1|	-	1.4e-88	297.0	0.0	1.6e-88	296.8	0.0	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3179)
UPF0547	PF10571.9	gi|345006715|ref|YP_004809568.1|	-	0.74	10.0	2.0	0.54	10.4	0.3	1.6	2	0	0	2	2	2	0	Uncharacterised	protein	family	UPF0547
tRNA-synt_2c	PF01411.19	gi|345006716|ref|YP_004809569.1|	-	6.3e-15	54.7	0.0	8.4e-15	54.3	0.0	1.1	1	0	0	1	1	1	1	tRNA	synthetases	class	II	(A)
tRNA_SAD	PF07973.14	gi|345006716|ref|YP_004809569.1|	-	5.6e-08	32.8	0.2	9.9e-08	32.0	0.2	1.4	1	0	0	1	1	1	1	Threonyl	and	Alanyl	tRNA	synthetase	second	additional	domain
HD	PF01966.22	gi|345006717|ref|YP_004809570.1|	-	2.8e-14	53.4	1.3	2.6e-13	50.3	0.1	2.1	2	0	0	2	2	2	1	HD	domain
MUG113	PF13455.6	gi|345006717|ref|YP_004809570.1|	-	0.077	13.7	0.1	1.7	9.3	0.0	2.3	2	0	0	2	2	2	0	Meiotically	up-regulated	gene	113
Epimerase	PF01370.21	gi|345006718|ref|YP_004809571.1|	-	2.3e-27	96.0	0.4	4.4e-25	88.5	0.4	2.1	1	1	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
GDP_Man_Dehyd	PF16363.5	gi|345006718|ref|YP_004809571.1|	-	7.2e-08	32.2	0.0	0.002	17.6	0.0	2.1	2	0	0	2	2	2	2	GDP-mannose	4,6	dehydratase
3Beta_HSD	PF01073.19	gi|345006718|ref|YP_004809571.1|	-	2.8e-07	29.8	0.0	1.9e-05	23.8	0.0	2.1	1	1	0	1	1	1	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
NAD_binding_10	PF13460.6	gi|345006718|ref|YP_004809571.1|	-	2.5e-06	27.5	0.0	4.1e-06	26.8	0.0	1.4	1	1	0	1	1	1	1	NAD(P)H-binding
NAD_binding_4	PF07993.12	gi|345006718|ref|YP_004809571.1|	-	1.3e-05	24.6	0.0	0.005	16.0	0.0	2.2	2	0	0	2	2	2	2	Male	sterility	protein
RmlD_sub_bind	PF04321.17	gi|345006718|ref|YP_004809571.1|	-	7.5e-05	22.0	0.0	0.12	11.4	0.0	2.1	2	0	0	2	2	2	2	RmlD	substrate	binding	domain
adh_short	PF00106.25	gi|345006718|ref|YP_004809571.1|	-	0.082	12.4	0.0	0.14	11.6	0.0	1.4	1	0	0	1	1	1	0	short	chain	dehydrogenase
NmrA	PF05368.13	gi|345006718|ref|YP_004809571.1|	-	0.11	12.1	0.0	0.17	11.4	0.0	1.3	1	0	0	1	1	1	0	NmrA-like	family
CbiJ	PF02571.14	gi|345006718|ref|YP_004809571.1|	-	0.22	11.0	0.0	0.37	10.2	0.0	1.4	1	0	0	1	1	1	0	Precorrin-6x	reductase	CbiJ/CobK
PALP	PF00291.25	gi|345006719|ref|YP_004809572.1|	-	2.9e-57	194.3	4.7	3.6e-57	194.0	4.7	1.1	1	0	0	1	1	1	1	Pyridoxal-phosphate	dependent	enzyme
Thiolase_N	PF00108.23	gi|345006720|ref|YP_004809573.1|	-	1.3e-24	87.0	0.6	3.8e-24	85.5	0.6	1.7	1	1	0	1	1	1	1	Thiolase,	N-terminal	domain
ketoacyl-synt	PF00109.26	gi|345006720|ref|YP_004809573.1|	-	7.4e-10	38.8	8.1	3.5e-08	33.3	1.9	3.1	3	1	1	4	4	4	2	Beta-ketoacyl	synthase,	N-terminal	domain
Thiolase_C	PF02803.18	gi|345006720|ref|YP_004809573.1|	-	1.8e-09	37.3	1.5	3.1e-09	36.5	0.2	2.2	2	0	0	2	2	2	1	Thiolase,	C-terminal	domain
Ketoacyl-synt_C	PF02801.22	gi|345006720|ref|YP_004809573.1|	-	0.046	13.7	0.5	0.43	10.6	0.1	2.7	3	0	0	3	3	3	0	Beta-ketoacyl	synthase,	C-terminal	domain
OB_aCoA_assoc	PF01796.17	gi|345006721|ref|YP_004809574.1|	-	2.5e-12	46.6	1.2	3.4e-12	46.2	1.2	1.2	1	0	0	1	1	1	1	DUF35	OB-fold	domain,	acyl-CoA-associated
DUF35_N	PF12172.8	gi|345006721|ref|YP_004809574.1|	-	0.012	15.5	1.7	0.025	14.5	1.7	1.5	1	0	0	1	1	1	0	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
Abhydrolase_6	PF12697.7	gi|345006722|ref|YP_004809575.1|	-	8e-19	69.1	6.2	1.3e-18	68.4	6.2	1.3	1	0	0	1	1	1	1	Alpha/beta	hydrolase	family
Abhydrolase_1	PF00561.20	gi|345006722|ref|YP_004809575.1|	-	1e-10	41.7	0.0	2.4e-10	40.5	0.0	1.6	2	0	0	2	2	2	1	alpha/beta	hydrolase	fold
Hydrolase_4	PF12146.8	gi|345006722|ref|YP_004809575.1|	-	5.1e-06	25.9	0.0	7.8e-06	25.3	0.0	1.3	1	0	0	1	1	1	1	Serine	aminopeptidase,	S33
Exo_endo_phos	PF03372.23	gi|345006722|ref|YP_004809575.1|	-	0.00063	19.3	0.1	0.00077	19.0	0.1	1.2	1	0	0	1	1	1	1	Endonuclease/Exonuclease/phosphatase	family
Fe_dep_repr_C	PF02742.15	gi|345006723|ref|YP_004809576.1|	-	3.9e-27	94.1	2.7	8.6e-27	93.0	2.7	1.6	1	0	0	1	1	1	1	Iron	dependent	repressor,	metal	binding	and	dimerisation	domain
Fe_dep_repress	PF01325.19	gi|345006723|ref|YP_004809576.1|	-	1.2e-17	63.8	0.8	3.4e-17	62.4	0.4	2.0	2	0	0	2	2	2	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
FeoA	PF04023.14	gi|345006723|ref|YP_004809576.1|	-	9.2e-13	48.3	0.3	9.2e-13	48.3	0.3	1.8	2	0	0	2	2	1	1	FeoA	domain
MarR_2	PF12802.7	gi|345006723|ref|YP_004809576.1|	-	8.7e-07	28.7	0.0	2.7e-06	27.2	0.0	1.8	1	0	0	1	1	1	1	MarR	family
MarR	PF01047.22	gi|345006723|ref|YP_004809576.1|	-	1.3e-05	25.0	0.0	3.4e-05	23.7	0.0	1.7	1	0	0	1	1	1	1	MarR	family
HTH_Crp_2	PF13545.6	gi|345006723|ref|YP_004809576.1|	-	0.0001	22.2	0.0	0.00026	20.9	0.0	1.7	1	0	0	1	1	1	1	Crp-like	helix-turn-helix	domain
Rrf2	PF02082.20	gi|345006723|ref|YP_004809576.1|	-	0.00046	20.5	0.1	0.0015	18.8	0.0	2.0	2	0	0	2	2	2	1	Transcriptional	regulator
DUF2250	PF10007.9	gi|345006723|ref|YP_004809576.1|	-	0.0018	18.4	0.1	0.0036	17.4	0.1	1.6	1	1	0	1	1	1	1	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
TrmB	PF01978.19	gi|345006723|ref|YP_004809576.1|	-	0.0018	18.1	0.1	0.0048	16.8	0.1	1.7	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HrcA_DNA-bdg	PF03444.15	gi|345006723|ref|YP_004809576.1|	-	0.0043	16.7	0.0	0.01	15.5	0.0	1.6	1	0	0	1	1	1	1	Winged	helix-turn-helix	transcription	repressor,	HrcA	DNA-binding
HTH_IclR	PF09339.10	gi|345006723|ref|YP_004809576.1|	-	0.0063	16.3	0.0	0.045	13.6	0.0	2.2	2	0	0	2	2	2	1	IclR	helix-turn-helix	domain
HTH_12	PF08461.10	gi|345006723|ref|YP_004809576.1|	-	0.012	15.5	0.9	0.051	13.5	0.2	2.4	2	1	0	2	2	1	0	Ribonuclease	R	winged-helix	domain
HTH_20	PF12840.7	gi|345006723|ref|YP_004809576.1|	-	0.014	15.5	0.2	0.083	13.0	0.0	2.3	2	0	0	2	2	2	0	Helix-turn-helix	domain
Topoisom_bac	PF01131.20	gi|345006723|ref|YP_004809576.1|	-	0.025	13.6	0.0	0.037	13.0	0.0	1.2	1	0	0	1	1	1	0	DNA	topoisomerase
HTH_24	PF13412.6	gi|345006723|ref|YP_004809576.1|	-	0.04	13.5	0.0	0.1	12.1	0.0	1.7	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
HTH_13	PF11972.8	gi|345006723|ref|YP_004809576.1|	-	0.073	13.2	0.0	0.18	11.9	0.0	1.6	1	0	0	1	1	1	0	HTH	DNA	binding	domain
HTH_27	PF13463.6	gi|345006723|ref|YP_004809576.1|	-	0.092	13.3	0.1	0.61	10.6	0.0	2.3	2	0	0	2	2	2	0	Winged	helix	DNA-binding	domain
Penicillinase_R	PF03965.16	gi|345006723|ref|YP_004809576.1|	-	0.1	13.0	0.0	0.22	11.9	0.0	1.5	1	0	0	1	1	1	0	Penicillinase	repressor
HTH_5	PF01022.20	gi|345006723|ref|YP_004809576.1|	-	0.12	12.2	0.0	0.27	11.1	0.0	1.6	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
FeoC	PF09012.10	gi|345006723|ref|YP_004809576.1|	-	0.2	11.8	0.0	0.52	10.4	0.0	1.7	2	0	0	2	2	1	0	FeoC	like	transcriptional	regulator
Crp	PF00325.20	gi|345006723|ref|YP_004809576.1|	-	0.21	11.3	0.6	0.32	10.7	0.0	1.7	2	0	0	2	2	1	0	Bacterial	regulatory	proteins,	crp	family
Sigma70_r3	PF04539.16	gi|345006723|ref|YP_004809576.1|	-	0.22	11.6	3.2	1.9	8.6	0.1	3.3	3	1	0	3	3	3	0	Sigma-70	region	3
Unstab_antitox	PF09720.10	gi|345006723|ref|YP_004809576.1|	-	1.5	8.9	7.0	0.62	10.2	1.6	2.7	3	0	0	3	3	2	0	Putative	addiction	module	component
LysE	PF01810.18	gi|345006724|ref|YP_004809577.1|	-	1.2e-21	77.0	10.8	2.3e-20	72.9	10.8	2.1	1	1	0	1	1	1	1	LysE	type	translocator
Fe-ADH_2	PF13685.6	gi|345006725|ref|YP_004809578.1|	-	2.6e-60	204.2	0.5	3.4e-60	203.8	0.5	1.1	1	0	0	1	1	1	1	Iron-containing	alcohol	dehydrogenase
Fe-ADH	PF00465.19	gi|345006725|ref|YP_004809578.1|	-	9.9e-20	70.7	3.8	7.4e-19	67.8	3.8	1.9	1	1	0	1	1	1	1	Iron-containing	alcohol	dehydrogenase
DHQ_synthase	PF01761.20	gi|345006725|ref|YP_004809578.1|	-	5e-08	32.4	0.1	1.9e-07	30.5	0.1	1.7	1	1	0	1	1	1	1	3-dehydroquinate	synthase
DUF420	PF04238.12	gi|345006726|ref|YP_004809579.1|	-	2.4e-35	121.7	6.6	2.4e-35	121.7	6.6	1.4	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF420)
DUF3302	PF11742.8	gi|345006726|ref|YP_004809579.1|	-	0.0018	18.4	0.7	0.0018	18.4	0.7	2.2	3	0	0	3	3	3	1	Protein	of	unknown	function	(DUF3302)
DUF2306	PF10067.9	gi|345006726|ref|YP_004809579.1|	-	0.0041	17.3	5.6	0.4	10.9	0.3	2.4	2	1	0	2	2	2	2	Predicted	membrane	protein	(DUF2306)
DUF2231	PF09990.9	gi|345006726|ref|YP_004809579.1|	-	0.0068	16.8	2.0	0.0068	16.8	2.0	2.3	2	1	0	2	2	2	1	Predicted	membrane	protein	(DUF2231)
Orai-1	PF07856.12	gi|345006726|ref|YP_004809579.1|	-	0.03	14.0	0.6	0.056	13.1	0.6	1.6	1	1	0	1	1	1	0	Mediator	of	CRAC	channel	activity
MASE1	PF05231.14	gi|345006726|ref|YP_004809579.1|	-	0.14	11.3	9.3	0.25	10.5	9.3	1.4	1	1	0	1	1	1	0	MASE1
DUF2070	PF09843.9	gi|345006726|ref|YP_004809579.1|	-	0.14	10.4	2.9	0.16	10.2	2.9	1.2	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2070)
DUF202	PF02656.15	gi|345006726|ref|YP_004809579.1|	-	0.26	11.8	8.5	6.4	7.3	0.5	3.2	1	1	2	3	3	3	0	Domain	of	unknown	function	(DUF202)
PEMT	PF04191.13	gi|345006726|ref|YP_004809579.1|	-	0.5	10.8	0.0	0.5	10.8	0.0	3.1	3	1	1	4	4	4	0	Phospholipid	methyltransferase
Myelin_PLP	PF01275.19	gi|345006726|ref|YP_004809579.1|	-	0.54	10.1	2.8	1.1	9.1	1.4	2.3	1	1	2	3	3	3	0	Myelin	proteolipid	protein	(PLP	or	lipophilin)
HhH-GPD	PF00730.25	gi|345006727|ref|YP_004809580.1|	-	7.7e-23	81.0	0.0	1.1e-22	80.5	0.0	1.3	1	0	0	1	1	1	1	HhH-GPD	superfamily	base	excision	DNA	repair	protein
HHH	PF00633.23	gi|345006727|ref|YP_004809580.1|	-	3.7e-10	39.1	0.0	1.8e-09	36.9	0.0	2.1	2	0	0	2	2	2	1	Helix-hairpin-helix	motif
EndIII_4Fe-2S	PF10576.9	gi|345006727|ref|YP_004809580.1|	-	1.7e-06	28.2	5.1	2.7e-06	27.6	5.1	1.3	1	0	0	1	1	1	1	Iron-sulfur	binding	domain	of	endonuclease	III
HHH_5	PF14520.6	gi|345006727|ref|YP_004809580.1|	-	1.2e-05	25.8	0.0	0.14	12.8	0.0	2.4	2	0	0	2	2	2	2	Helix-hairpin-helix	domain
HHH_2	PF12826.7	gi|345006727|ref|YP_004809580.1|	-	0.011	15.8	0.1	2.3	8.4	0.0	2.3	2	0	0	2	2	2	0	Helix-hairpin-helix	motif
Ribosomal_S13	PF00416.22	gi|345006727|ref|YP_004809580.1|	-	0.052	13.9	0.1	0.3	11.5	0.0	2.1	2	0	0	2	2	2	0	Ribosomal	protein	S13/S18
DUF2400	PF09674.10	gi|345006727|ref|YP_004809580.1|	-	0.096	12.7	0.0	0.29	11.1	0.0	1.7	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2400)
LacI	PF00356.21	gi|345006727|ref|YP_004809580.1|	-	0.12	12.2	0.4	2.4	8.0	0.1	2.3	2	0	0	2	2	2	0	Bacterial	regulatory	proteins,	lacI	family
Copper-bind	PF00127.20	gi|345006730|ref|YP_004809583.1|	-	1.7e-16	60.5	0.1	2.7e-16	59.8	0.1	1.3	1	0	0	1	1	1	1	Copper	binding	proteins,	plastocyanin/azurin	family
TAT_signal	PF10518.9	gi|345006730|ref|YP_004809583.1|	-	0.0003	20.5	8.4	0.0003	20.5	8.4	2.7	2	1	0	2	2	2	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
UCR_Fe-S_N	PF10399.9	gi|345006730|ref|YP_004809583.1|	-	9.7	5.6	8.8	0.91	8.9	3.0	2.3	2	0	0	2	2	2	0	Ubiquitinol-cytochrome	C	reductase	Fe-S	subunit	TAT	signal
AGTRAP	PF06396.11	gi|345006731|ref|YP_004809584.1|	-	0.0082	15.9	0.5	0.014	15.2	0.4	1.4	1	1	0	1	1	1	1	Angiotensin	II,	type	I	receptor-associated	protein	(AGTRAP)
MgtE	PF01769.16	gi|345006731|ref|YP_004809584.1|	-	0.013	15.9	1.6	0.016	15.6	1.6	1.1	1	0	0	1	1	1	0	Divalent	cation	transporter
Vma12	PF11712.8	gi|345006731|ref|YP_004809584.1|	-	0.19	11.8	0.3	0.28	11.2	0.3	1.3	1	0	0	1	1	1	0	Endoplasmic	reticulum-based	factor	for	assembly	of	V-ATPase
PhoR	PF11808.8	gi|345006731|ref|YP_004809584.1|	-	2.4	8.6	4.6	1.9	9.0	2.4	2.0	2	0	0	2	2	2	0	Phosphate	regulon	sensor	protein	PhoR
Cytochrome_B	PF00033.19	gi|345006732|ref|YP_004809585.1|	-	5.6e-46	156.7	16.1	1.3e-45	155.6	16.0	1.5	1	1	0	1	1	1	1	Cytochrome	b/b6/petB
Cytochrom_B_N_2	PF13631.6	gi|345006732|ref|YP_004809585.1|	-	1.6e-42	145.4	10.7	7.7e-42	143.2	10.5	1.9	2	0	0	2	2	2	1	Cytochrome	b(N-terminal)/b6/petB
DUF4405	PF14358.6	gi|345006732|ref|YP_004809585.1|	-	0.02	15.4	4.3	0.02	15.4	4.3	3.0	2	2	0	2	2	2	0	Domain	of	unknown	function	(DUF4405)
DUF373	PF04123.13	gi|345006732|ref|YP_004809585.1|	-	0.062	12.7	4.3	0.081	12.4	4.0	1.4	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF373)
Cytochrom_B_C	PF00032.17	gi|345006733|ref|YP_004809586.1|	-	1.1e-08	35.3	0.1	2.2e-08	34.3	0.1	1.6	1	1	0	1	1	1	1	Cytochrome	b(C-terminal)/b6/petD
SP_C-Propep	PF08999.10	gi|345006734|ref|YP_004809587.1|	-	0.049	13.4	0.0	0.085	12.6	0.0	1.4	1	0	0	1	1	1	0	Surfactant	protein	C,	N	terminal	propeptide
DUF3385	PF11865.8	gi|345006736|ref|YP_004809589.1|	-	0.14	12.0	0.1	0.15	12.0	0.1	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3385)
TctB	PF07331.11	gi|345006737|ref|YP_004809590.1|	-	0.0017	18.7	4.8	0.0022	18.3	4.8	1.2	1	0	0	1	1	1	1	Tripartite	tricarboxylate	transporter	TctB	family
DctM	PF06808.12	gi|345006737|ref|YP_004809590.1|	-	0.0019	17.1	3.1	0.0023	16.8	3.1	1.0	1	0	0	1	1	1	1	Tripartite	ATP-independent	periplasmic	transporter,	DctM	component
MlaE	PF02405.16	gi|345006737|ref|YP_004809590.1|	-	0.011	15.5	3.0	0.011	15.5	3.0	1.5	2	0	0	2	2	2	0	Permease	MlaE
DUF2933	PF11666.8	gi|345006737|ref|YP_004809590.1|	-	0.028	14.5	0.0	0.028	14.5	0.0	3.0	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF2933)
PRA1	PF03208.19	gi|345006737|ref|YP_004809590.1|	-	0.8	9.3	6.1	0.22	11.1	3.2	1.4	2	0	0	2	2	2	0	PRA1	family	protein
NAD_kinase	PF01513.21	gi|345006738|ref|YP_004809591.1|	-	1.1e-12	47.8	0.3	1.5e-12	47.3	0.3	1.1	1	0	0	1	1	1	1	ATP-NAD	kinase
Mito_fiss_Elm1	PF06258.11	gi|345006738|ref|YP_004809591.1|	-	0.02	14.0	0.0	0.033	13.3	0.0	1.3	1	0	0	1	1	1	0	Mitochondrial	fission	ELM1
Peptidase_M28	PF04389.17	gi|345006739|ref|YP_004809592.1|	-	2.6e-29	102.4	0.0	3.6e-29	101.9	0.0	1.2	1	0	0	1	1	1	1	Peptidase	family	M28
PA	PF02225.22	gi|345006739|ref|YP_004809592.1|	-	8e-13	48.2	0.1	1.8e-12	47.1	0.1	1.6	1	0	0	1	1	1	1	PA	domain
Peptidase_M42	PF05343.14	gi|345006739|ref|YP_004809592.1|	-	0.0067	15.5	0.3	0.012	14.6	0.3	1.4	1	0	0	1	1	1	1	M42	glutamyl	aminopeptidase
Capsid-VNN	PF11729.8	gi|345006739|ref|YP_004809592.1|	-	0.0074	15.3	0.0	0.015	14.4	0.0	1.4	1	0	0	1	1	1	1	nodavirus	capsid	protein
Peptidase_M20	PF01546.28	gi|345006739|ref|YP_004809592.1|	-	0.044	13.5	1.0	0.11	12.2	1.0	1.8	1	1	0	1	1	1	0	Peptidase	family	M20/M25/M40
Amino_oxidase	PF01593.24	gi|345006740|ref|YP_004809593.1|	-	6.9e-46	157.5	0.5	7.9e-46	157.3	0.5	1.0	1	0	0	1	1	1	1	Flavin	containing	amine	oxidoreductase
NAD_binding_8	PF13450.6	gi|345006740|ref|YP_004809593.1|	-	6e-16	58.4	0.3	1.6e-15	57.1	0.3	1.7	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
DAO	PF01266.24	gi|345006740|ref|YP_004809593.1|	-	2.1e-13	50.6	2.0	1e-06	28.6	0.2	2.2	2	0	0	2	2	2	2	FAD	dependent	oxidoreductase
Pyr_redox_2	PF07992.14	gi|345006740|ref|YP_004809593.1|	-	4.2e-08	32.8	5.3	4.2e-05	22.9	0.4	2.5	3	0	0	3	3	3	2	Pyridine	nucleotide-disulphide	oxidoreductase
HI0933_like	PF03486.14	gi|345006740|ref|YP_004809593.1|	-	3.8e-07	29.2	1.2	0.00029	19.7	0.3	2.1	2	0	0	2	2	2	2	HI0933-like	protein
Pyr_redox	PF00070.27	gi|345006740|ref|YP_004809593.1|	-	2.9e-06	27.7	1.7	0.003	18.1	0.8	2.6	2	0	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_oxidored	PF12831.7	gi|345006740|ref|YP_004809593.1|	-	1.7e-05	24.4	2.6	1.9e-05	24.3	1.2	1.7	2	0	0	2	2	2	1	FAD	dependent	oxidoreductase
FAD_binding_2	PF00890.24	gi|345006740|ref|YP_004809593.1|	-	8e-05	21.9	5.7	0.00016	20.9	2.1	2.2	2	0	0	2	2	2	1	FAD	binding	domain
FAD_binding_3	PF01494.19	gi|345006740|ref|YP_004809593.1|	-	0.00077	18.8	3.6	0.0045	16.3	0.4	2.2	2	0	0	2	2	2	1	FAD	binding	domain
GIDA	PF01134.22	gi|345006740|ref|YP_004809593.1|	-	0.00098	18.3	0.7	0.0015	17.7	0.7	1.2	1	0	0	1	1	1	1	Glucose	inhibited	division	protein	A
Pyr_redox_3	PF13738.6	gi|345006740|ref|YP_004809593.1|	-	0.0043	16.4	1.2	0.71	9.1	0.1	2.1	2	0	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
Thi4	PF01946.17	gi|345006740|ref|YP_004809593.1|	-	0.0084	15.4	2.0	0.036	13.3	0.4	2.1	2	0	0	2	2	2	1	Thi4	family
AlaDh_PNT_C	PF01262.21	gi|345006740|ref|YP_004809593.1|	-	0.014	14.7	0.1	0.031	13.6	0.1	1.5	1	0	0	1	1	1	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
ApbA	PF02558.16	gi|345006740|ref|YP_004809593.1|	-	0.026	14.2	0.3	0.15	11.7	0.1	2.1	2	0	0	2	2	2	0	Ketopantoate	reductase	PanE/ApbA
Trp_halogenase	PF04820.14	gi|345006740|ref|YP_004809593.1|	-	0.058	12.2	0.6	0.11	11.4	0.6	1.4	1	0	0	1	1	1	0	Tryptophan	halogenase
NAD_binding_9	PF13454.6	gi|345006740|ref|YP_004809593.1|	-	0.67	9.9	6.1	0.96	9.4	0.4	2.7	2	0	0	2	2	2	0	FAD-NAD(P)-binding
TrkA_N	PF02254.18	gi|345006740|ref|YP_004809593.1|	-	0.72	10.1	3.3	15	5.8	0.1	2.4	2	0	0	2	2	2	0	TrkA-N	domain
HTH_24	PF13412.6	gi|345006741|ref|YP_004809594.1|	-	9.9e-12	44.2	0.0	4.8e-11	42.1	0.0	2.1	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
MarR_2	PF12802.7	gi|345006741|ref|YP_004809594.1|	-	1.2e-10	41.1	0.2	3.7e-10	39.5	0.2	1.8	1	0	0	1	1	1	1	MarR	family
HTH_27	PF13463.6	gi|345006741|ref|YP_004809594.1|	-	6.8e-08	32.9	0.3	3.6e-07	30.6	0.1	2.2	2	0	0	2	2	2	1	Winged	helix	DNA-binding	domain
MarR	PF01047.22	gi|345006741|ref|YP_004809594.1|	-	9e-08	31.9	0.0	2.6e-07	30.5	0.0	1.7	1	0	0	1	1	1	1	MarR	family
HTH_Crp_2	PF13545.6	gi|345006741|ref|YP_004809594.1|	-	5.1e-07	29.6	0.2	1.9e-06	27.8	0.1	2.0	2	0	0	2	2	2	1	Crp-like	helix-turn-helix	domain
HTH_11	PF08279.12	gi|345006741|ref|YP_004809594.1|	-	1e-05	25.4	0.1	1.9e-05	24.5	0.1	1.5	1	0	0	1	1	1	1	HTH	domain
HTH_20	PF12840.7	gi|345006741|ref|YP_004809594.1|	-	1.2e-05	25.2	0.1	4.1e-05	23.6	0.1	1.9	1	0	0	1	1	1	1	Helix-turn-helix	domain
SMC_ScpB	PF04079.16	gi|345006741|ref|YP_004809594.1|	-	8e-05	22.3	0.2	0.00021	20.9	0.2	1.6	1	1	0	1	1	1	1	Segregation	and	condensation	complex	subunit	ScpB
HTH_45	PF14947.6	gi|345006741|ref|YP_004809594.1|	-	9.7e-05	22.3	0.0	0.00017	21.5	0.0	1.4	1	1	0	1	1	1	1	Winged	helix-turn-helix
HTH_IclR	PF09339.10	gi|345006741|ref|YP_004809594.1|	-	0.00012	21.8	0.0	0.00028	20.6	0.0	1.6	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
HTH_13	PF11972.8	gi|345006741|ref|YP_004809594.1|	-	0.00055	20.0	0.0	0.0016	18.5	0.0	1.8	1	0	0	1	1	1	1	HTH	DNA	binding	domain
Fe_dep_repress	PF01325.19	gi|345006741|ref|YP_004809594.1|	-	0.00055	20.1	0.0	0.0019	18.4	0.0	1.9	1	0	0	1	1	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_5	PF01022.20	gi|345006741|ref|YP_004809594.1|	-	0.0011	18.7	0.0	0.0021	17.9	0.0	1.5	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
Rrf2	PF02082.20	gi|345006741|ref|YP_004809594.1|	-	0.0015	18.8	0.0	0.0056	17.0	0.0	1.9	2	0	0	2	2	2	1	Transcriptional	regulator
HTH_12	PF08461.10	gi|345006741|ref|YP_004809594.1|	-	0.0015	18.4	0.2	0.0041	17.0	0.2	1.8	1	1	0	1	1	1	1	Ribonuclease	R	winged-helix	domain
DUF4423	PF14394.6	gi|345006741|ref|YP_004809594.1|	-	0.0022	17.7	0.0	0.0035	17.1	0.0	1.3	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4423)
DUF4364	PF14277.6	gi|345006741|ref|YP_004809594.1|	-	0.0029	17.4	0.0	0.0044	16.8	0.0	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4364)
TrmB	PF01978.19	gi|345006741|ref|YP_004809594.1|	-	0.0031	17.4	0.1	0.0077	16.1	0.1	1.7	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HemN_C	PF06969.16	gi|345006741|ref|YP_004809594.1|	-	0.0043	17.1	0.0	0.012	15.7	0.0	1.8	1	0	0	1	1	1	1	HemN	C-terminal	domain
Mnd1	PF03962.15	gi|345006741|ref|YP_004809594.1|	-	0.0045	17.2	0.0	0.015	15.6	0.0	1.8	2	0	0	2	2	1	1	Mnd1	HTH	domain
GntR	PF00392.21	gi|345006741|ref|YP_004809594.1|	-	0.0046	16.6	0.3	0.013	15.2	0.3	1.8	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	gntR	family
TetR_C_7	PF14246.6	gi|345006741|ref|YP_004809594.1|	-	0.011	15.7	0.1	0.033	14.2	0.1	1.8	1	0	0	1	1	1	0	AefR-like	transcriptional	repressor,	C-terminal	domain
LexA_DNA_bind	PF01726.16	gi|345006741|ref|YP_004809594.1|	-	0.012	15.3	0.1	0.045	13.5	0.0	2.0	2	0	0	2	2	2	0	LexA	DNA	binding	domain
HTH_23	PF13384.6	gi|345006741|ref|YP_004809594.1|	-	0.015	15.1	0.0	0.038	13.8	0.0	1.7	1	0	0	1	1	1	0	Homeodomain-like	domain
HTH_AsnC-type	PF13404.6	gi|345006741|ref|YP_004809594.1|	-	0.018	14.8	0.4	0.087	12.7	0.1	2.3	2	0	0	2	2	2	0	AsnC-type	helix-turn-helix	domain
FaeA	PF04703.12	gi|345006741|ref|YP_004809594.1|	-	0.023	15.1	0.3	0.088	13.2	0.0	2.0	2	0	0	2	2	2	0	FaeA-like	protein
Mrr_N	PF14338.6	gi|345006741|ref|YP_004809594.1|	-	0.03	14.5	0.1	0.083	13.0	0.1	1.9	1	1	0	1	1	1	0	Mrr	N-terminal	domain
Rio2_N	PF09202.11	gi|345006741|ref|YP_004809594.1|	-	0.059	13.6	0.0	0.11	12.8	0.0	1.4	1	0	0	1	1	1	0	Rio2,	N-terminal
HTH_3	PF01381.22	gi|345006741|ref|YP_004809594.1|	-	0.13	12.3	0.1	0.26	11.4	0.1	1.5	1	0	0	1	1	1	0	Helix-turn-helix
HTH_28	PF13518.6	gi|345006741|ref|YP_004809594.1|	-	0.2	11.8	0.1	0.2	11.8	0.1	2.0	2	0	0	2	2	1	0	Helix-turn-helix	domain
AbiEi_4	PF13338.6	gi|345006741|ref|YP_004809594.1|	-	0.34	11.1	3.7	0.34	11.1	0.2	2.7	3	0	0	3	3	3	0	Transcriptional	regulator,	AbiEi	antitoxin
DnaJ	PF00226.31	gi|345006743|ref|YP_004809596.1|	-	9.2e-10	38.5	0.1	1.5e-09	37.8	0.1	1.3	1	0	0	1	1	1	1	DnaJ	domain
RPT	PF13446.6	gi|345006743|ref|YP_004809596.1|	-	0.03	14.3	0.2	0.074	13.0	0.1	1.8	2	0	0	2	2	2	0	A	repeated	domain	in	UCH-protein
Peptidase_S9	PF00326.21	gi|345006744|ref|YP_004809597.1|	-	1.3e-46	158.8	0.0	2.1e-46	158.1	0.0	1.3	1	0	0	1	1	1	1	Prolyl	oligopeptidase	family
DLH	PF01738.18	gi|345006744|ref|YP_004809597.1|	-	4.9e-13	49.1	0.0	1.7e-12	47.4	0.0	1.8	1	1	0	1	1	1	1	Dienelactone	hydrolase	family
Peptidase_S15	PF02129.18	gi|345006744|ref|YP_004809597.1|	-	5.3e-12	45.9	0.0	8.2e-08	32.2	0.0	2.2	1	1	1	2	2	2	2	X-Pro	dipeptidyl-peptidase	(S15	family)
Abhydrolase_1	PF00561.20	gi|345006744|ref|YP_004809597.1|	-	3.4e-11	43.3	0.1	2.3e-05	24.1	0.1	2.3	1	1	1	2	2	2	2	alpha/beta	hydrolase	fold
Hydrolase_4	PF12146.8	gi|345006744|ref|YP_004809597.1|	-	6.8e-10	38.6	0.0	4.3e-06	26.2	0.0	2.3	2	0	0	2	2	2	2	Serine	aminopeptidase,	S33
PD40	PF07676.12	gi|345006744|ref|YP_004809597.1|	-	1.9e-09	37.2	0.3	0.017	15.0	0.0	3.9	3	0	0	3	3	3	3	WD40-like	Beta	Propeller	Repeat
Peptidase_S9_N	PF02897.15	gi|345006744|ref|YP_004809597.1|	-	5.9e-06	25.3	0.3	0.00044	19.2	0.1	2.8	1	1	1	2	2	2	1	Prolyl	oligopeptidase,	N-terminal	beta-propeller	domain
AXE1	PF05448.12	gi|345006744|ref|YP_004809597.1|	-	1.2e-05	24.2	0.0	0.0032	16.2	0.0	2.2	1	1	0	1	1	1	1	Acetyl	xylan	esterase	(AXE1)
BAAT_C	PF08840.11	gi|345006744|ref|YP_004809597.1|	-	0.00097	19.1	0.0	0.027	14.4	0.0	2.2	1	1	0	1	1	1	1	BAAT	/	Acyl-CoA	thioester	hydrolase	C	terminal
DPPIV_N	PF00930.21	gi|345006744|ref|YP_004809597.1|	-	0.001	17.9	0.0	0.23	10.2	0.0	3.7	1	1	0	1	1	1	1	Dipeptidyl	peptidase	IV	(DPP	IV)	N-terminal	region
Abhydrolase_2	PF02230.16	gi|345006744|ref|YP_004809597.1|	-	0.01	15.7	0.0	2.8	7.7	0.0	2.3	2	0	0	2	2	2	1	Phospholipase/Carboxylesterase
Abhydrolase_3	PF07859.13	gi|345006744|ref|YP_004809597.1|	-	0.012	15.5	0.0	0.59	10.0	0.0	2.4	1	1	0	1	1	1	0	alpha/beta	hydrolase	fold
Peptidase_S28	PF05577.12	gi|345006744|ref|YP_004809597.1|	-	0.018	13.9	0.0	0.026	13.3	0.0	1.1	1	0	0	1	1	1	0	Serine	carboxypeptidase	S28
PQQ	PF01011.21	gi|345006744|ref|YP_004809597.1|	-	0.018	14.9	0.1	40	4.4	0.0	3.9	4	0	0	4	4	4	0	PQQ	enzyme	repeat
Abhydrolase_4	PF08386.10	gi|345006744|ref|YP_004809597.1|	-	0.076	13.1	0.0	0.16	12.1	0.0	1.4	1	0	0	1	1	1	0	TAP-like	protein
Cad	PF03596.13	gi|345006745|ref|YP_004809598.1|	-	0.1	12.5	0.0	0.11	12.4	0.0	1.0	1	0	0	1	1	1	0	Cadmium	resistance	transporter
bPH_2	PF03703.14	gi|345006747|ref|YP_004809600.1|	-	1.9e-06	28.0	0.1	2.6e-06	27.5	0.1	1.3	1	0	0	1	1	1	1	Bacterial	PH	domain
RDD	PF06271.12	gi|345006748|ref|YP_004809601.1|	-	3.4e-23	82.4	1.9	3.9e-23	82.2	1.9	1.1	1	0	0	1	1	1	1	RDD	family
B12-binding	PF02310.19	gi|345006749|ref|YP_004809602.1|	-	2.5e-23	82.4	0.4	2.8e-23	82.3	0.4	1.0	1	0	0	1	1	1	1	B12	binding	domain
IMPDH	PF00478.25	gi|345006749|ref|YP_004809602.1|	-	0.013	14.5	0.0	0.016	14.2	0.0	1.1	1	0	0	1	1	1	0	IMP	dehydrogenase	/	GMP	reductase	domain
BcrAD_BadFG	PF01869.20	gi|345006749|ref|YP_004809602.1|	-	0.024	14.1	0.0	0.042	13.3	0.0	1.4	1	1	0	1	1	1	0	BadF/BadG/BcrA/BcrD	ATPase	family
MeaB	PF03308.16	gi|345006750|ref|YP_004809603.1|	-	2.7e-92	308.5	1.0	3.5e-92	308.2	1.0	1.1	1	0	0	1	1	1	1	Methylmalonyl	Co-A	mutase-associated	GTPase	MeaB
cobW	PF02492.19	gi|345006750|ref|YP_004809603.1|	-	2.8e-07	30.3	1.1	2.7e-06	27.1	1.1	2.4	1	1	0	1	1	1	1	CobW/HypB/UreG,	nucleotide-binding	domain
NTPase_1	PF03266.15	gi|345006750|ref|YP_004809603.1|	-	1.2e-05	25.3	0.3	0.00036	20.5	0.1	2.5	2	0	0	2	2	2	1	NTPase
SRP54	PF00448.22	gi|345006750|ref|YP_004809603.1|	-	2.4e-05	24.0	0.3	8.6e-05	22.2	0.3	1.9	1	1	0	1	1	1	1	SRP54-type	protein,	GTPase	domain
ATP_bind_1	PF03029.17	gi|345006750|ref|YP_004809603.1|	-	4.8e-05	23.3	0.2	0.00021	21.1	0.0	2.0	2	1	0	2	2	2	1	Conserved	hypothetical	ATP	binding	protein
GTP_EFTU	PF00009.27	gi|345006750|ref|YP_004809603.1|	-	0.0001	22.0	0.0	0.23	10.9	0.0	2.2	2	0	0	2	2	2	2	Elongation	factor	Tu	GTP	binding	domain
AAA_16	PF13191.6	gi|345006750|ref|YP_004809603.1|	-	0.00011	22.7	0.8	0.00068	20.1	0.1	2.2	2	0	0	2	2	2	1	AAA	ATPase	domain
AAA_22	PF13401.6	gi|345006750|ref|YP_004809603.1|	-	0.0002	21.6	0.1	0.00071	19.9	0.0	1.9	2	0	0	2	2	2	1	AAA	domain
AAA_30	PF13604.6	gi|345006750|ref|YP_004809603.1|	-	0.00027	20.7	0.9	0.00068	19.4	0.0	2.0	2	0	0	2	2	2	1	AAA	domain
ABC_tran	PF00005.27	gi|345006750|ref|YP_004809603.1|	-	0.00028	21.4	0.1	0.00056	20.4	0.1	1.5	1	0	0	1	1	1	1	ABC	transporter
KAP_NTPase	PF07693.14	gi|345006750|ref|YP_004809603.1|	-	0.00061	19.1	0.0	0.00087	18.6	0.0	1.2	1	0	0	1	1	1	1	KAP	family	P-loop	domain
AAA_18	PF13238.6	gi|345006750|ref|YP_004809603.1|	-	0.00079	20.0	0.9	0.0029	18.1	0.1	2.3	2	1	1	3	3	2	1	AAA	domain
CbiA	PF01656.23	gi|345006750|ref|YP_004809603.1|	-	0.00081	19.5	0.0	0.0014	18.7	0.0	1.5	1	0	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
AAA_29	PF13555.6	gi|345006750|ref|YP_004809603.1|	-	0.001	18.8	0.4	0.002	17.8	0.4	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
MobB	PF03205.14	gi|345006750|ref|YP_004809603.1|	-	0.0016	18.4	0.0	0.0052	16.7	0.0	1.9	2	0	0	2	2	2	1	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
AAA_28	PF13521.6	gi|345006750|ref|YP_004809603.1|	-	0.0038	17.5	0.8	0.017	15.4	0.0	2.3	2	0	0	2	2	2	1	AAA	domain
KTI12	PF08433.10	gi|345006750|ref|YP_004809603.1|	-	0.0039	16.7	0.0	0.0076	15.7	0.0	1.4	1	0	0	1	1	1	1	Chromatin	associated	protein	KTI12
RsgA_GTPase	PF03193.16	gi|345006750|ref|YP_004809603.1|	-	0.0046	16.9	0.0	0.17	11.8	0.0	2.5	3	0	0	3	3	2	1	RsgA	GTPase
TrwB_AAD_bind	PF10412.9	gi|345006750|ref|YP_004809603.1|	-	0.0058	15.6	0.1	0.012	14.5	0.1	1.5	1	0	0	1	1	1	1	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
Zeta_toxin	PF06414.12	gi|345006750|ref|YP_004809603.1|	-	0.0063	15.8	0.0	0.014	14.7	0.0	1.6	1	0	0	1	1	1	1	Zeta	toxin
AAA_33	PF13671.6	gi|345006750|ref|YP_004809603.1|	-	0.01	16.0	0.5	0.026	14.7	0.0	1.9	2	1	0	2	2	2	0	AAA	domain
NACHT	PF05729.12	gi|345006750|ref|YP_004809603.1|	-	0.014	15.3	0.3	0.039	13.9	0.0	1.8	2	0	0	2	2	2	0	NACHT	domain
NB-ARC	PF00931.22	gi|345006750|ref|YP_004809603.1|	-	0.016	14.4	0.0	0.027	13.6	0.0	1.3	1	0	0	1	1	1	0	NB-ARC	domain
Ploopntkinase3	PF18751.1	gi|345006750|ref|YP_004809603.1|	-	0.016	15.1	0.0	0.041	13.8	0.0	1.7	1	0	0	1	1	1	0	P-loop	Nucleotide	Kinase3
AAA_17	PF13207.6	gi|345006750|ref|YP_004809603.1|	-	0.022	15.2	1.5	0.042	14.3	0.1	2.2	3	0	0	3	3	2	0	AAA	domain
MMR_HSR1	PF01926.23	gi|345006750|ref|YP_004809603.1|	-	0.024	14.7	0.1	0.1	12.7	0.0	2.0	2	0	0	2	2	2	0	50S	ribosome-binding	GTPase
ATPase	PF06745.13	gi|345006750|ref|YP_004809603.1|	-	0.032	13.6	0.1	0.054	12.8	0.1	1.4	1	0	0	1	1	1	0	KaiC
PRK	PF00485.18	gi|345006750|ref|YP_004809603.1|	-	0.033	13.9	0.0	0.062	13.0	0.0	1.5	1	0	0	1	1	1	0	Phosphoribulokinase	/	Uridine	kinase	family
AAA_19	PF13245.6	gi|345006750|ref|YP_004809603.1|	-	0.034	14.5	0.1	0.075	13.4	0.1	1.7	1	1	0	1	1	1	0	AAA	domain
RNA_helicase	PF00910.22	gi|345006750|ref|YP_004809603.1|	-	0.037	14.4	0.0	0.16	12.3	0.0	1.9	2	0	0	2	2	2	0	RNA	helicase
Viral_helicase1	PF01443.18	gi|345006750|ref|YP_004809603.1|	-	0.047	13.4	0.1	0.14	11.9	0.1	1.8	2	0	0	2	2	2	0	Viral	(Superfamily	1)	RNA	helicase
AAA_5	PF07728.14	gi|345006750|ref|YP_004809603.1|	-	0.047	13.7	0.1	0.32	11.0	0.0	2.2	2	0	0	2	2	2	0	AAA	domain	(dynein-related	subfamily)
DUF87	PF01935.17	gi|345006750|ref|YP_004809603.1|	-	0.066	13.3	0.8	0.17	11.9	0.1	1.9	2	0	0	2	2	2	0	Helicase	HerA,	central	domain
AbiJ_NTD3	PF18860.1	gi|345006750|ref|YP_004809603.1|	-	0.082	12.4	0.0	0.16	11.5	0.0	1.4	1	0	0	1	1	1	0	AbiJ	N-terminal	domain	3
ATPase_2	PF01637.18	gi|345006750|ref|YP_004809603.1|	-	0.094	12.6	0.0	0.26	11.2	0.0	1.6	2	0	0	2	2	2	0	ATPase	domain	predominantly	from	Archaea
DUF815	PF05673.13	gi|345006750|ref|YP_004809603.1|	-	0.14	11.3	0.0	0.24	10.5	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF815)
AAA_14	PF13173.6	gi|345006750|ref|YP_004809603.1|	-	0.18	11.9	0.0	0.36	10.9	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
Epimerase	PF01370.21	gi|345006751|ref|YP_004809604.1|	-	8.7e-26	90.8	0.9	4.3e-12	46.0	0.0	2.1	1	1	1	2	2	2	2	NAD	dependent	epimerase/dehydratase	family
NAD_binding_10	PF13460.6	gi|345006751|ref|YP_004809604.1|	-	7.1e-09	35.8	0.2	1.6e-08	34.6	0.2	1.7	1	1	0	1	1	1	1	NAD(P)H-binding
3Beta_HSD	PF01073.19	gi|345006751|ref|YP_004809604.1|	-	2.7e-08	33.2	0.0	0.0033	16.5	0.0	2.1	1	1	1	2	2	2	2	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
GDP_Man_Dehyd	PF16363.5	gi|345006751|ref|YP_004809604.1|	-	7.3e-08	32.2	0.0	0.00012	21.6	0.0	2.5	2	1	0	3	3	3	2	GDP-mannose	4,6	dehydratase
NAD_binding_4	PF07993.12	gi|345006751|ref|YP_004809604.1|	-	2.3e-06	27.0	0.0	0.026	13.7	0.0	2.5	2	0	0	2	2	2	2	Male	sterility	protein
RmlD_sub_bind	PF04321.17	gi|345006751|ref|YP_004809604.1|	-	7.2e-05	22.0	0.1	0.0019	17.4	0.0	2.1	2	0	0	2	2	2	1	RmlD	substrate	binding	domain
CbiJ	PF02571.14	gi|345006751|ref|YP_004809604.1|	-	0.00074	19.1	0.0	0.0011	18.6	0.0	1.2	1	0	0	1	1	1	1	Precorrin-6x	reductase	CbiJ/CobK
TrkA_N	PF02254.18	gi|345006751|ref|YP_004809604.1|	-	0.04	14.2	0.0	0.081	13.2	0.0	1.5	1	0	0	1	1	1	0	TrkA-N	domain
NmrA	PF05368.13	gi|345006751|ref|YP_004809604.1|	-	0.068	12.7	0.0	0.099	12.2	0.0	1.3	1	0	0	1	1	1	0	NmrA-like	family
MoCF_biosynth	PF00994.24	gi|345006752|ref|YP_004809605.1|	-	1.1e-31	109.4	0.0	2.1e-31	108.5	0.0	1.4	1	1	0	1	1	1	1	Probable	molybdopterin	binding	domain
AhpC-TSA	PF00578.21	gi|345006753|ref|YP_004809606.1|	-	1.9e-21	76.3	0.0	2.2e-21	76.0	0.0	1.1	1	0	0	1	1	1	1	AhpC/TSA	family
Redoxin	PF08534.10	gi|345006753|ref|YP_004809606.1|	-	2.5e-18	66.2	0.0	2.9e-18	66.0	0.0	1.0	1	0	0	1	1	1	1	Redoxin
DUF899	PF05988.12	gi|345006753|ref|YP_004809606.1|	-	0.0051	16.4	0.0	0.0064	16.1	0.0	1.1	1	0	0	1	1	1	1	Bacterial	protein	of	unknown	function	(DUF899)
AhpC-TSA_2	PF13911.6	gi|345006753|ref|YP_004809606.1|	-	0.0058	16.7	0.0	2.3	8.3	0.0	2.3	1	1	1	2	2	2	2	AhpC/TSA	antioxidant	enzyme
OrfB_Zn_ribbon	PF07282.11	gi|345006754|ref|YP_004809607.1|	-	5e-19	68.0	1.2	9.2e-19	67.1	1.2	1.5	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
DUF72	PF01904.18	gi|345006754|ref|YP_004809607.1|	-	0.066	13.3	0.3	0.1	12.7	0.3	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	DUF72
Zn_Tnp_IS1595	PF12760.7	gi|345006754|ref|YP_004809607.1|	-	1.4	9.0	5.4	2.7	8.0	5.4	1.5	1	0	0	1	1	1	0	Transposase	zinc-ribbon	domain
EMC3_TMCO1	PF01956.16	gi|345006755|ref|YP_004809608.1|	-	1.5e-47	161.5	0.5	1.8e-47	161.2	0.5	1.1	1	0	0	1	1	1	1	Integral	membrane	protein	EMC3/TMCO1-like
MscS_TM	PF12794.7	gi|345006755|ref|YP_004809608.1|	-	0.02	13.8	0.1	0.036	12.9	0.1	1.3	1	0	0	1	1	1	0	Mechanosensitive	ion	channel	inner	membrane	domain	1
60KD_IMP	PF02096.20	gi|345006755|ref|YP_004809608.1|	-	0.077	12.9	8.9	0.41	10.5	8.9	2.1	1	1	0	1	1	1	0	60Kd	inner	membrane	protein
ADK	PF00406.22	gi|345006756|ref|YP_004809609.1|	-	4.6e-42	143.7	0.0	6.6e-42	143.2	0.0	1.2	1	0	0	1	1	1	1	Adenylate	kinase
AAA_17	PF13207.6	gi|345006756|ref|YP_004809609.1|	-	1.5e-21	77.3	0.4	6.7e-21	75.1	0.0	2.0	1	1	1	2	2	2	1	AAA	domain
AAA_18	PF13238.6	gi|345006756|ref|YP_004809609.1|	-	8.9e-09	36.0	0.2	4.3e-08	33.8	0.1	2.2	1	1	1	2	2	2	1	AAA	domain
AAA_33	PF13671.6	gi|345006756|ref|YP_004809609.1|	-	2.5e-07	31.0	0.1	1.6e-05	25.1	0.1	2.3	1	1	0	1	1	1	1	AAA	domain
ADK_lid	PF05191.14	gi|345006756|ref|YP_004809609.1|	-	0.0092	15.9	0.3	0.04	13.9	0.3	2.1	1	1	0	1	1	1	1	Adenylate	kinase,	active	site	lid
Thymidylate_kin	PF02223.17	gi|345006756|ref|YP_004809609.1|	-	0.016	14.9	1.9	2.4	7.8	0.0	3.0	2	1	1	3	3	3	0	Thymidylate	kinase
RuvB_N	PF05496.12	gi|345006756|ref|YP_004809609.1|	-	0.051	13.3	0.0	0.08	12.7	0.0	1.5	1	0	0	1	1	1	0	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
Ploopntkinase3	PF18751.1	gi|345006756|ref|YP_004809609.1|	-	0.07	13.0	0.0	0.64	9.9	0.0	2.5	1	1	2	3	3	3	0	P-loop	Nucleotide	Kinase3
AAA_22	PF13401.6	gi|345006756|ref|YP_004809609.1|	-	0.18	12.1	0.0	0.7	10.2	0.0	1.9	2	0	0	2	2	2	0	AAA	domain
Rnk_N	PF14760.6	gi|345006757|ref|YP_004809610.1|	-	9.2	6.8	8.5	4.4	7.9	0.4	2.8	3	0	0	3	3	3	0	Rnk	N-terminus
Acetyltransf_1	PF00583.25	gi|345006758|ref|YP_004809611.1|	-	1.7e-08	34.7	0.0	7.4e-06	26.2	0.0	2.3	2	0	0	2	2	2	2	Acetyltransferase	(GNAT)	family
Acetyltransf_7	PF13508.7	gi|345006758|ref|YP_004809611.1|	-	0.0011	19.3	0.0	0.0052	17.2	0.0	1.9	2	0	0	2	2	2	1	Acetyltransferase	(GNAT)	domain
FR47	PF08445.10	gi|345006758|ref|YP_004809611.1|	-	0.0024	17.8	0.1	0.095	12.7	0.0	2.5	2	0	0	2	2	2	1	FR47-like	protein
Acetyltransf_CG	PF14542.6	gi|345006758|ref|YP_004809611.1|	-	0.13	12.4	0.1	2.6	8.3	0.0	2.3	2	0	0	2	2	2	0	GCN5-related	N-acetyl-transferase
Acetyltransf_10	PF13673.7	gi|345006758|ref|YP_004809611.1|	-	0.17	11.8	0.0	3.9	7.4	0.0	2.2	2	0	0	2	2	2	0	Acetyltransferase	(GNAT)	domain
Asparaginase	PF00710.20	gi|345006759|ref|YP_004809612.1|	-	3.6e-58	196.3	0.4	5.8e-58	195.6	0.4	1.3	1	0	0	1	1	1	1	Asparaginase,	N-terminal
Asparaginase_C	PF17763.1	gi|345006759|ref|YP_004809612.1|	-	3.2e-23	82.1	0.0	2.4e-22	79.3	0.0	2.1	2	0	0	2	2	2	1	Glutaminase/Asparaginase	C-terminal	domain
GatD_N	PF18195.1	gi|345006759|ref|YP_004809612.1|	-	1e-14	53.5	0.0	1.7e-14	52.8	0.0	1.4	1	0	0	1	1	1	1	GatD	N-terminal	domain
DDDD	PF10161.9	gi|345006760|ref|YP_004809613.1|	-	0.057	13.2	0.4	0.13	12.0	0.2	1.7	2	0	0	2	2	2	0	Putative	mitochondrial	precursor	protein
DUF4191	PF13829.6	gi|345006760|ref|YP_004809613.1|	-	0.17	11.2	3.0	0.22	10.8	3.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4191)
7TM-7TMR_HD	PF07698.11	gi|345006760|ref|YP_004809613.1|	-	0.6	9.8	12.2	0.85	9.3	12.2	1.2	1	0	0	1	1	1	0	7TM	receptor	with	intracellular	HD	hydrolase
CPP1-like	PF11833.8	gi|345006760|ref|YP_004809613.1|	-	1.9	8.1	14.0	1.2	8.7	1.9	2.2	1	1	1	2	2	2	0	Protein	CHAPERONE-LIKE	PROTEIN	OF	POR1-like
HTH_5	PF01022.20	gi|345006761|ref|YP_004809614.1|	-	7.3e-18	64.2	0.3	5.5e-16	58.2	0.3	2.3	2	0	0	2	2	2	1	Bacterial	regulatory	protein,	arsR	family
MarR_2	PF12802.7	gi|345006761|ref|YP_004809614.1|	-	7.2e-13	48.2	3.2	9.1e-08	31.9	0.1	2.3	2	0	0	2	2	2	2	MarR	family
HTH_20	PF12840.7	gi|345006761|ref|YP_004809614.1|	-	7.5e-13	48.3	2.5	1.7e-11	44.0	0.1	2.7	3	0	0	3	3	2	1	Helix-turn-helix	domain
TrmB	PF01978.19	gi|345006761|ref|YP_004809614.1|	-	1e-11	44.6	0.3	1.3e-05	24.9	0.0	2.6	2	0	0	2	2	2	2	Sugar-specific	transcriptional	regulator	TrmB
MarR	PF01047.22	gi|345006761|ref|YP_004809614.1|	-	2.1e-09	37.2	0.1	7.7e-07	29.0	0.1	2.4	2	0	0	2	2	2	1	MarR	family
Fe_dep_repress	PF01325.19	gi|345006761|ref|YP_004809614.1|	-	3.6e-09	36.7	0.0	1.9e-05	24.8	0.0	2.2	2	0	0	2	2	2	2	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_24	PF13412.6	gi|345006761|ref|YP_004809614.1|	-	4.4e-08	32.5	1.2	5.7e-06	25.8	0.3	3.0	2	1	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
HTH_27	PF13463.6	gi|345006761|ref|YP_004809614.1|	-	9.9e-08	32.4	0.7	0.00019	21.8	0.2	2.7	2	1	0	2	2	2	2	Winged	helix	DNA-binding	domain
Rrf2	PF02082.20	gi|345006761|ref|YP_004809614.1|	-	1e-06	29.0	0.1	0.0017	18.7	0.0	2.3	2	0	0	2	2	2	2	Transcriptional	regulator
LexA_DNA_bind	PF01726.16	gi|345006761|ref|YP_004809614.1|	-	1.5e-06	27.9	0.0	0.016	15.0	0.0	2.7	2	0	0	2	2	2	2	LexA	DNA	binding	domain
PadR	PF03551.14	gi|345006761|ref|YP_004809614.1|	-	1.3e-05	25.0	0.7	0.0042	17.0	0.1	3.6	3	1	0	3	3	3	1	Transcriptional	regulator	PadR-like	family
HTH_IclR	PF09339.10	gi|345006761|ref|YP_004809614.1|	-	2.1e-05	24.2	1.5	0.16	11.8	0.1	2.5	2	0	0	2	2	2	2	IclR	helix-turn-helix	domain
DprA_WH	PF17782.1	gi|345006761|ref|YP_004809614.1|	-	3.7e-05	23.7	0.6	0.00034	20.6	0.0	2.5	2	0	0	2	2	2	1	DprA	winged	helix	domain
HTH_11	PF08279.12	gi|345006761|ref|YP_004809614.1|	-	9.2e-05	22.3	0.0	0.00019	21.3	0.0	1.5	1	0	0	1	1	1	1	HTH	domain
HTH_Crp_2	PF13545.6	gi|345006761|ref|YP_004809614.1|	-	0.00011	22.1	0.1	0.001	19.0	0.1	2.3	2	0	0	2	2	2	1	Crp-like	helix-turn-helix	domain
GntR	PF00392.21	gi|345006761|ref|YP_004809614.1|	-	0.00011	21.8	1.0	0.57	9.9	0.0	2.6	3	0	0	3	3	2	2	Bacterial	regulatory	proteins,	gntR	family
DUF2250	PF10007.9	gi|345006761|ref|YP_004809614.1|	-	0.00044	20.3	0.0	0.097	12.8	0.0	2.3	2	0	0	2	2	2	1	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
BLACT_WH	PF17778.1	gi|345006761|ref|YP_004809614.1|	-	0.00086	19.2	3.9	0.078	13.0	0.3	2.5	2	0	0	2	2	2	1	Beta-lactamase	associated	winged	helix	domain
HTH_10	PF04967.12	gi|345006761|ref|YP_004809614.1|	-	0.0012	18.6	0.0	0.0034	17.2	0.0	1.8	1	0	0	1	1	1	1	HTH	DNA	binding	domain
HTH_CodY	PF08222.11	gi|345006761|ref|YP_004809614.1|	-	0.0013	18.2	0.0	0.0076	15.8	0.0	2.2	2	0	0	2	2	2	1	CodY	helix-turn-helix	domain
AbiEi_4	PF13338.6	gi|345006761|ref|YP_004809614.1|	-	0.0018	18.4	0.3	2.4	8.4	0.0	2.5	2	0	0	2	2	2	2	Transcriptional	regulator,	AbiEi	antitoxin
DUF4423	PF14394.6	gi|345006761|ref|YP_004809614.1|	-	0.0019	18.0	0.0	1.5	8.5	0.0	2.2	2	0	0	2	2	2	2	Domain	of	unknown	function	(DUF4423)
HTH_47	PF16221.5	gi|345006761|ref|YP_004809614.1|	-	0.0066	16.0	0.0	3.9	7.1	0.0	2.3	2	0	0	2	2	2	1	winged	helix-turn-helix
ArsR	PF09824.9	gi|345006761|ref|YP_004809614.1|	-	0.0072	15.9	0.0	0.049	13.2	0.0	2.0	2	0	0	2	2	2	1	ArsR	transcriptional	regulator
DUF3572	PF12096.8	gi|345006761|ref|YP_004809614.1|	-	0.0091	16.2	0.1	0.047	13.9	0.1	2.0	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF3572)
DDRGK	PF09756.9	gi|345006761|ref|YP_004809614.1|	-	0.0094	15.6	0.0	0.018	14.7	0.0	1.4	1	0	0	1	1	1	1	DDRGK	domain
HTH_DeoR	PF08220.12	gi|345006761|ref|YP_004809614.1|	-	0.01	15.6	0.0	0.025	14.3	0.0	1.6	1	0	0	1	1	1	0	DeoR-like	helix-turn-helix	domain
HTH_AsnC-type	PF13404.6	gi|345006761|ref|YP_004809614.1|	-	0.011	15.5	1.4	0.17	11.8	0.0	3.3	3	1	0	3	3	3	0	AsnC-type	helix-turn-helix	domain
HTH_28	PF13518.6	gi|345006761|ref|YP_004809614.1|	-	0.013	15.6	0.7	0.69	10.1	0.1	2.4	2	0	0	2	2	2	0	Helix-turn-helix	domain
SMC_ScpB	PF04079.16	gi|345006761|ref|YP_004809614.1|	-	0.019	14.6	0.0	1.9	8.1	0.0	2.2	2	0	0	2	2	2	0	Segregation	and	condensation	complex	subunit	ScpB
HTH_36	PF13730.6	gi|345006761|ref|YP_004809614.1|	-	0.023	14.7	0.0	0.064	13.2	0.0	1.8	2	0	0	2	2	1	0	Helix-turn-helix	domain
DUF4194	PF13835.6	gi|345006761|ref|YP_004809614.1|	-	0.042	13.6	0.0	3.8	7.2	0.0	2.4	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4194)
MerR	PF00376.23	gi|345006761|ref|YP_004809614.1|	-	0.047	13.5	0.1	2.8	7.8	0.0	3.0	2	1	0	2	2	2	0	MerR	family	regulatory	protein
TnsD	PF15978.5	gi|345006761|ref|YP_004809614.1|	-	0.049	12.6	0.0	0.068	12.1	0.0	1.2	1	0	0	1	1	1	0	Tn7-like	transposition	protein	D
HTH_34	PF13601.6	gi|345006761|ref|YP_004809614.1|	-	0.064	13.4	0.0	0.17	12.1	0.0	1.7	2	0	0	2	2	1	0	Winged	helix	DNA-binding	domain
HxlR	PF01638.17	gi|345006761|ref|YP_004809614.1|	-	0.07	13.0	0.0	0.15	11.9	0.0	1.6	1	0	0	1	1	1	0	HxlR-like	helix-turn-helix
FeoC	PF09012.10	gi|345006761|ref|YP_004809614.1|	-	0.13	12.4	0.0	2.4	8.3	0.0	2.2	2	0	0	2	2	2	0	FeoC	like	transcriptional	regulator
FaeA	PF04703.12	gi|345006761|ref|YP_004809614.1|	-	0.14	12.6	0.0	0.28	11.6	0.0	1.5	1	0	0	1	1	1	0	FaeA-like	protein
Ribosomal_S25	PF03297.15	gi|345006761|ref|YP_004809614.1|	-	0.15	12.3	0.0	2.9	8.1	0.0	2.2	2	0	0	2	2	2	0	S25	ribosomal	protein
IF2_N	PF04760.15	gi|345006761|ref|YP_004809614.1|	-	0.15	11.9	0.0	0.93	9.4	0.0	2.2	2	0	0	2	2	2	0	Translation	initiation	factor	IF-2,	N-terminal	region
HTH_40	PF14493.6	gi|345006761|ref|YP_004809614.1|	-	0.18	12.3	0.0	0.53	10.8	0.0	1.8	2	0	0	2	2	1	0	Helix-turn-helix	domain
HTH_1	PF00126.27	gi|345006761|ref|YP_004809614.1|	-	0.26	11.3	1.7	1.1	9.3	0.0	2.6	3	0	0	3	3	2	0	Bacterial	regulatory	helix-turn-helix	protein,	lysR	family
DUF1405	PF07187.11	gi|345006762|ref|YP_004809615.1|	-	5.9e-35	120.6	11.3	9.5e-35	119.9	11.3	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1405)
HemY_N	PF07219.13	gi|345006762|ref|YP_004809615.1|	-	0.013	15.7	1.1	0.025	14.8	0.0	2.0	2	0	0	2	2	2	0	HemY	protein	N-terminus
Peptidase_S9	PF00326.21	gi|345006763|ref|YP_004809616.1|	-	1.1e-46	159.0	0.3	1.7e-46	158.4	0.3	1.3	1	0	0	1	1	1	1	Prolyl	oligopeptidase	family
DLH	PF01738.18	gi|345006763|ref|YP_004809616.1|	-	1.1e-14	54.5	0.0	2.2e-14	53.5	0.0	1.4	1	0	0	1	1	1	1	Dienelactone	hydrolase	family
Abhydrolase_3	PF07859.13	gi|345006763|ref|YP_004809616.1|	-	3.4e-05	23.8	0.7	0.00015	21.7	0.7	2.0	1	1	0	1	1	1	1	alpha/beta	hydrolase	fold
PD40	PF07676.12	gi|345006763|ref|YP_004809616.1|	-	0.00017	21.5	0.5	0.94	9.5	0.0	3.9	4	0	0	4	4	4	2	WD40-like	Beta	Propeller	Repeat
Hydrolase_4	PF12146.8	gi|345006763|ref|YP_004809616.1|	-	0.00029	20.2	4.2	0.0036	16.6	0.0	2.2	2	0	0	2	2	2	1	Serine	aminopeptidase,	S33
AXE1	PF05448.12	gi|345006763|ref|YP_004809616.1|	-	0.00074	18.3	0.4	0.59	8.7	0.1	2.2	2	0	0	2	2	2	2	Acetyl	xylan	esterase	(AXE1)
Abhydrolase_1	PF00561.20	gi|345006763|ref|YP_004809616.1|	-	0.00088	19.0	3.3	0.72	9.5	0.0	2.4	1	1	1	2	2	2	2	alpha/beta	hydrolase	fold
ANAPC4_WD40	PF12894.7	gi|345006763|ref|YP_004809616.1|	-	0.01	16.1	0.0	0.42	10.9	0.0	2.4	2	0	0	2	2	2	0	Anaphase-promoting	complex	subunit	4	WD40	domain
DPPIV_N	PF00930.21	gi|345006763|ref|YP_004809616.1|	-	0.019	13.7	0.0	5.4	5.7	0.0	3.5	2	2	0	3	3	3	0	Dipeptidyl	peptidase	IV	(DPP	IV)	N-terminal	region
Abhydrolase_2	PF02230.16	gi|345006763|ref|YP_004809616.1|	-	0.024	14.4	0.0	0.057	13.2	0.0	1.5	1	0	0	1	1	1	0	Phospholipase/Carboxylesterase
FSH1	PF03959.13	gi|345006763|ref|YP_004809616.1|	-	0.057	13.1	0.7	0.16	11.6	0.1	2.1	2	1	0	2	2	2	0	Serine	hydrolase	(FSH1)
Abhydrolase_4	PF08386.10	gi|345006763|ref|YP_004809616.1|	-	0.078	13.1	0.0	0.16	12.1	0.0	1.5	1	0	0	1	1	1	0	TAP-like	protein
BAAT_C	PF08840.11	gi|345006763|ref|YP_004809616.1|	-	0.11	12.4	0.0	0.21	11.5	0.0	1.4	1	0	0	1	1	1	0	BAAT	/	Acyl-CoA	thioester	hydrolase	C	terminal
Gmad1	PF10647.9	gi|345006763|ref|YP_004809616.1|	-	3.7	7.2	14.4	2.7	7.7	5.0	3.3	1	1	1	3	3	3	0	Lipoprotein	LpqB	beta-propeller	domain
Amino_oxidase	PF01593.24	gi|345006765|ref|YP_004809618.1|	-	8.3e-65	219.8	0.8	9.6e-65	219.6	0.8	1.0	1	0	0	1	1	1	1	Flavin	containing	amine	oxidoreductase
NAD_binding_8	PF13450.6	gi|345006765|ref|YP_004809618.1|	-	4.3e-15	55.7	1.0	9.6e-15	54.6	1.0	1.6	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
FAD_oxidored	PF12831.7	gi|345006765|ref|YP_004809618.1|	-	1.6e-07	31.1	0.1	2.2e-07	30.6	0.1	1.4	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
DAO	PF01266.24	gi|345006765|ref|YP_004809618.1|	-	1e-06	28.6	9.5	5.2e-05	23.0	9.4	2.5	1	1	0	1	1	1	1	FAD	dependent	oxidoreductase
Pyr_redox_3	PF13738.6	gi|345006765|ref|YP_004809618.1|	-	2e-06	27.3	0.3	0.03	13.6	0.0	2.2	2	0	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_binding_2	PF00890.24	gi|345006765|ref|YP_004809618.1|	-	2.3e-06	27.0	1.8	3.9e-06	26.2	1.8	1.3	1	0	0	1	1	1	1	FAD	binding	domain
Pyr_redox	PF00070.27	gi|345006765|ref|YP_004809618.1|	-	5.9e-06	26.8	1.2	0.0051	17.3	0.3	3.3	3	0	0	3	3	3	1	Pyridine	nucleotide-disulphide	oxidoreductase
HI0933_like	PF03486.14	gi|345006765|ref|YP_004809618.1|	-	1.4e-05	24.0	0.6	0.001	17.8	0.4	2.1	2	0	0	2	2	2	1	HI0933-like	protein
Pyr_redox_2	PF07992.14	gi|345006765|ref|YP_004809618.1|	-	5.8e-05	22.5	1.9	0.00017	21.0	0.4	2.1	2	1	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_binding_3	PF01494.19	gi|345006765|ref|YP_004809618.1|	-	0.00039	19.8	2.1	0.00043	19.7	0.2	1.8	2	0	0	2	2	2	1	FAD	binding	domain
Thi4	PF01946.17	gi|345006765|ref|YP_004809618.1|	-	0.0033	16.7	0.1	0.0055	16.0	0.1	1.3	1	0	0	1	1	1	1	Thi4	family
GIDA	PF01134.22	gi|345006765|ref|YP_004809618.1|	-	0.014	14.5	0.7	0.022	13.9	0.7	1.2	1	0	0	1	1	1	0	Glucose	inhibited	division	protein	A
IlvN	PF07991.12	gi|345006765|ref|YP_004809618.1|	-	0.019	14.5	0.3	0.23	11.0	0.1	2.4	2	0	0	2	2	2	0	Acetohydroxy	acid	isomeroreductase,	NADPH-binding	domain
AlaDh_PNT_C	PF01262.21	gi|345006765|ref|YP_004809618.1|	-	0.029	13.7	0.2	0.052	12.8	0.2	1.3	1	0	0	1	1	1	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
Lycopene_cycl	PF05834.12	gi|345006765|ref|YP_004809618.1|	-	0.25	10.4	1.5	0.35	9.9	0.3	1.7	2	0	0	2	2	2	0	Lycopene	cyclase	protein
NAD_binding_9	PF13454.6	gi|345006765|ref|YP_004809618.1|	-	0.64	10.0	3.3	17	5.3	0.0	3.0	3	0	0	3	3	3	0	FAD-NAD(P)-binding
iPGM_N	PF06415.13	gi|345006766|ref|YP_004809619.1|	-	5.8e-74	248.2	0.0	7.7e-74	247.8	0.0	1.2	1	0	0	1	1	1	1	BPG-independent	PGAM	N-terminus	(iPGM_N)
Metalloenzyme	PF01676.18	gi|345006766|ref|YP_004809619.1|	-	1.3e-68	231.1	0.0	1.6e-68	230.7	0.0	1.1	1	0	0	1	1	1	1	Metalloenzyme	superfamily
Phosphodiest	PF01663.22	gi|345006766|ref|YP_004809619.1|	-	1.7e-07	31.2	0.1	1.7e-06	27.9	0.1	2.1	2	0	0	2	2	2	1	Type	I	phosphodiesterase	/	nucleotide	pyrophosphatase
Sulfatase	PF00884.23	gi|345006766|ref|YP_004809619.1|	-	0.0027	17.1	0.0	0.0064	15.9	0.0	1.7	1	1	0	1	1	1	1	Sulfatase
PglZ	PF08665.12	gi|345006766|ref|YP_004809619.1|	-	0.019	15.1	0.1	0.033	14.3	0.1	1.3	1	0	0	1	1	1	0	PglZ	domain
Metallophos_2	PF12850.7	gi|345006766|ref|YP_004809619.1|	-	0.042	14.0	0.7	1.5	8.9	0.1	2.3	2	0	0	2	2	2	0	Calcineurin-like	phosphoesterase	superfamily	domain
ArsA_ATPase	PF02374.15	gi|345006768|ref|YP_004809621.1|	-	9.7e-80	268.0	0.0	5.6e-79	265.5	0.0	1.8	1	1	0	1	1	1	1	Anion-transporting	ATPase
CbiA	PF01656.23	gi|345006768|ref|YP_004809621.1|	-	1.9e-08	34.4	0.0	3.6e-08	33.5	0.0	1.5	1	1	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
AAA_31	PF13614.6	gi|345006768|ref|YP_004809621.1|	-	1.6e-07	31.5	0.0	2.6e-06	27.5	0.0	2.1	2	0	0	2	2	2	1	AAA	domain
SRP54	PF00448.22	gi|345006768|ref|YP_004809621.1|	-	0.0016	18.1	0.2	0.44	10.1	0.2	2.3	2	0	0	2	2	2	2	SRP54-type	protein,	GTPase	domain
ParA	PF10609.9	gi|345006768|ref|YP_004809621.1|	-	0.002	17.6	3.7	0.0034	16.9	0.1	2.6	3	0	0	3	3	3	1	NUBPL	iron-transfer	P-loop	NTPase
Fer4_NifH	PF00142.18	gi|345006768|ref|YP_004809621.1|	-	0.0031	17.0	0.1	0.0054	16.2	0.1	1.3	1	0	0	1	1	1	1	4Fe-4S	iron	sulfur	cluster	binding	proteins,	NifH/frxC	family
AAA_24	PF13479.6	gi|345006768|ref|YP_004809621.1|	-	0.05	13.3	0.0	0.099	12.4	0.0	1.5	1	1	0	1	1	1	0	AAA	domain
PhoH	PF02562.16	gi|345006768|ref|YP_004809621.1|	-	0.055	12.9	0.0	0.097	12.1	0.0	1.3	1	0	0	1	1	1	0	PhoH-like	protein
CBP_BcsQ	PF06564.12	gi|345006768|ref|YP_004809621.1|	-	0.058	12.9	0.0	0.095	12.2	0.0	1.3	1	0	0	1	1	1	0	Cellulose	biosynthesis	protein	BcsQ
AAA_25	PF13481.6	gi|345006768|ref|YP_004809621.1|	-	2.5	7.6	6.4	1.2	8.7	0.5	2.8	4	0	0	4	4	4	0	AAA	domain
zinc-ribbons_6	PF07191.12	gi|345006769|ref|YP_004809622.1|	-	0.98	9.4	8.7	1.3	9.0	7.6	1.8	1	1	0	1	1	1	0	zinc-ribbons
adh_short	PF00106.25	gi|345006770|ref|YP_004809623.1|	-	1.3e-49	168.3	0.0	1.6e-49	168.0	0.0	1.1	1	0	0	1	1	1	1	short	chain	dehydrogenase
adh_short_C2	PF13561.6	gi|345006770|ref|YP_004809623.1|	-	1.3e-38	132.9	0.0	1.7e-38	132.5	0.0	1.1	1	0	0	1	1	1	1	Enoyl-(Acyl	carrier	protein)	reductase
KR	PF08659.10	gi|345006770|ref|YP_004809623.1|	-	1.1e-11	45.0	0.0	1.4e-11	44.6	0.0	1.2	1	0	0	1	1	1	1	KR	domain
NAD_binding_10	PF13460.6	gi|345006770|ref|YP_004809623.1|	-	1.6e-06	28.1	0.0	3.5e-06	27.0	0.0	1.6	1	1	0	1	1	1	1	NAD(P)H-binding
Epimerase	PF01370.21	gi|345006770|ref|YP_004809623.1|	-	0.00011	21.8	0.0	0.00025	20.6	0.0	1.8	1	1	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
DUF1776	PF08643.10	gi|345006770|ref|YP_004809623.1|	-	0.00016	21.1	0.0	0.00048	19.6	0.0	1.7	1	1	0	1	1	1	1	Fungal	family	of	unknown	function	(DUF1776)
RmlD_sub_bind	PF04321.17	gi|345006770|ref|YP_004809623.1|	-	0.00063	18.9	0.0	0.0014	17.8	0.0	1.5	1	1	0	1	1	1	1	RmlD	substrate	binding	domain
ADH_zinc_N	PF00107.26	gi|345006770|ref|YP_004809623.1|	-	0.16	12.0	0.1	0.57	10.2	0.0	1.9	2	1	0	2	2	2	0	Zinc-binding	dehydrogenase
Endonuclease_5	PF04493.14	gi|345006771|ref|YP_004809624.1|	-	1.9e-53	181.1	0.0	2.4e-53	180.8	0.0	1.1	1	0	0	1	1	1	1	Endonuclease	V
Rhomboid	PF01694.22	gi|345006772|ref|YP_004809625.1|	-	1.5e-32	112.7	16.6	1.5e-32	112.7	16.6	1.6	2	0	0	2	2	2	1	Rhomboid	family
zf-AN1	PF01428.16	gi|345006772|ref|YP_004809625.1|	-	9.1e-13	48.1	7.6	1.3e-12	47.7	7.6	1.2	1	0	0	1	1	1	1	AN1-like	Zinc	finger
DUF1751	PF08551.10	gi|345006772|ref|YP_004809625.1|	-	0.00065	20.2	0.1	0.0016	19.0	0.1	1.7	1	0	0	1	1	1	1	Eukaryotic	integral	membrane	protein	(DUF1751)
FYVE	PF01363.21	gi|345006772|ref|YP_004809625.1|	-	0.037	14.1	0.8	0.055	13.6	0.8	1.3	1	0	0	1	1	1	0	FYVE	zinc	finger
zf-HIT	PF04438.16	gi|345006772|ref|YP_004809625.1|	-	0.42	10.5	5.0	0.67	9.9	5.0	1.3	1	0	0	1	1	1	0	HIT	zinc	finger
DUF3482	PF11981.8	gi|345006772|ref|YP_004809625.1|	-	1.4	8.2	7.1	2.4	7.5	7.1	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3482)
zf-C2H2_11	PF16622.5	gi|345006772|ref|YP_004809625.1|	-	3.8	7.4	5.9	0.33	10.8	0.8	1.8	2	0	0	2	2	2	0	zinc-finger	C2H2-type
Peptidase_S8	PF00082.22	gi|345006773|ref|YP_004809626.1|	-	8.2e-43	146.8	12.0	1.5e-42	145.9	12.0	1.4	1	0	0	1	1	1	1	Subtilase	family
PPC	PF04151.15	gi|345006773|ref|YP_004809626.1|	-	0.012	16.7	7.3	0.012	16.7	7.3	3.3	3	2	0	3	3	3	0	Bacterial	pre-peptidase	C-terminal	domain
Inhibitor_I53	PF11714.8	gi|345006773|ref|YP_004809626.1|	-	2.9	8.1	8.3	4.1	7.7	0.2	3.6	2	1	1	3	3	3	0	Thrombin	inhibitor	Madanin
NYN	PF01936.18	gi|345006774|ref|YP_004809627.1|	-	2.6e-18	66.9	0.0	3e-18	66.7	0.0	1.0	1	0	0	1	1	1	1	NYN	domain
PALP	PF00291.25	gi|345006774|ref|YP_004809627.1|	-	0.0073	15.8	0.4	0.0088	15.5	0.4	1.2	1	0	0	1	1	1	1	Pyridoxal-phosphate	dependent	enzyme
DUF5615	PF18480.1	gi|345006774|ref|YP_004809627.1|	-	0.074	12.8	0.0	0.24	11.2	0.0	1.9	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF5615)
PIN7	PF18475.1	gi|345006774|ref|YP_004809627.1|	-	0.13	12.9	0.0	0.19	12.3	0.0	1.3	1	0	0	1	1	1	0	PIN	domain
HTH_31	PF13560.6	gi|345006775|ref|YP_004809628.1|	-	2.7e-09	37.2	0.1	8e-09	35.7	0.1	1.8	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_3	PF01381.22	gi|345006775|ref|YP_004809628.1|	-	4e-07	30.0	0.0	8.7e-07	28.9	0.0	1.6	1	0	0	1	1	1	1	Helix-turn-helix
HTH_19	PF12844.7	gi|345006775|ref|YP_004809628.1|	-	0.00036	20.5	0.0	0.00075	19.5	0.0	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain
YdaS_antitoxin	PF15943.5	gi|345006775|ref|YP_004809628.1|	-	0.052	13.4	0.0	0.16	11.8	0.0	1.8	1	0	0	1	1	1	0	Putative	antitoxin	of	bacterial	toxin-antitoxin	system,	YdaS/YdaT
MarR_2	PF12802.7	gi|345006775|ref|YP_004809628.1|	-	0.083	12.8	0.0	0.23	11.4	0.0	1.8	1	0	0	1	1	1	0	MarR	family
HTH_24	PF13412.6	gi|345006775|ref|YP_004809628.1|	-	0.13	11.9	0.0	0.54	9.9	0.0	2.1	2	0	0	2	2	2	0	Winged	helix-turn-helix	DNA-binding
zinc_ribbon_4	PF13717.6	gi|345006776|ref|YP_004809629.1|	-	0.0037	17.1	1.7	0.0071	16.2	0.8	2.0	2	0	0	2	2	2	1	zinc-ribbon	domain
Lar_restr_allev	PF14354.6	gi|345006776|ref|YP_004809629.1|	-	0.077	13.4	0.3	0.21	12.0	0.3	1.8	1	0	0	1	1	1	0	Restriction	alleviation	protein	Lar
DUF2387	PF09526.10	gi|345006776|ref|YP_004809629.1|	-	0.077	13.2	2.0	0.098	12.8	0.3	2.1	2	1	0	2	2	2	0	Probable	metal-binding	protein	(DUF2387)
TF_Zn_Ribbon	PF08271.12	gi|345006776|ref|YP_004809629.1|	-	0.086	12.4	2.2	0.17	11.4	1.1	2.1	2	0	0	2	2	2	0	TFIIB	zinc-binding
DNA_RNApol_7kD	PF03604.13	gi|345006776|ref|YP_004809629.1|	-	0.12	12.1	0.2	0.36	10.5	0.2	1.8	1	0	0	1	1	1	0	DNA	directed	RNA	polymerase,	7	kDa	subunit
YusW	PF14039.6	gi|345006776|ref|YP_004809629.1|	-	0.55	10.8	4.0	0.18	12.3	1.0	1.7	2	0	0	2	2	2	0	YusW-like	protein
zinc_ribbon_5	PF13719.6	gi|345006776|ref|YP_004809629.1|	-	0.87	9.4	3.8	0.58	9.9	1.2	2.1	2	1	0	2	2	2	0	zinc-ribbon	domain
Nudix_N_2	PF14803.6	gi|345006776|ref|YP_004809629.1|	-	4.3	7.3	6.1	6.9	6.7	4.5	2.3	2	1	0	2	2	2	0	Nudix	N-terminal
MarR_2	PF12802.7	gi|345006777|ref|YP_004809630.1|	-	0.002	18.0	0.5	0.0049	16.7	0.5	1.6	1	1	0	1	1	1	1	MarR	family
DUF2688	PF10892.8	gi|345006777|ref|YP_004809630.1|	-	0.066	12.7	0.2	0.16	11.4	0.2	1.7	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2688)
LexA_DNA_bind	PF01726.16	gi|345006777|ref|YP_004809630.1|	-	0.069	12.9	0.1	0.11	12.3	0.1	1.4	1	0	0	1	1	1	0	LexA	DNA	binding	domain
Aminotran_1_2	PF00155.21	gi|345006779|ref|YP_004809632.1|	-	1.6e-55	188.7	0.0	2e-55	188.5	0.0	1.0	1	0	0	1	1	1	1	Aminotransferase	class	I	and	II
Aminotran_5	PF00266.19	gi|345006779|ref|YP_004809632.1|	-	6.7e-10	38.5	0.0	1.4e-09	37.4	0.0	1.4	1	1	0	1	1	1	1	Aminotransferase	class-V
Beta_elim_lyase	PF01212.21	gi|345006779|ref|YP_004809632.1|	-	1.3e-06	27.9	0.0	1.9e-06	27.4	0.0	1.2	1	0	0	1	1	1	1	Beta-eliminating	lyase
Aminotran_MocR	PF12897.7	gi|345006779|ref|YP_004809632.1|	-	0.00012	21.0	0.7	0.043	12.6	0.1	2.3	2	1	0	2	2	2	2	Alanine-glyoxylate	amino-transferase
Cys_Met_Meta_PP	PF01053.20	gi|345006779|ref|YP_004809632.1|	-	0.00092	17.8	0.0	0.0012	17.4	0.0	1.1	1	0	0	1	1	1	1	Cys/Met	metabolism	PLP-dependent	enzyme
PALP	PF00291.25	gi|345006779|ref|YP_004809632.1|	-	0.033	13.6	0.2	2	7.7	0.1	2.3	1	1	1	2	2	2	0	Pyridoxal-phosphate	dependent	enzyme
Aminotran_3	PF00202.21	gi|345006779|ref|YP_004809632.1|	-	0.13	10.9	0.0	0.18	10.5	0.0	1.2	1	0	0	1	1	1	0	Aminotransferase	class-III
SepSecS	PF05889.13	gi|345006779|ref|YP_004809632.1|	-	0.15	10.7	0.0	0.22	10.2	0.0	1.2	1	0	0	1	1	1	0	O-phosphoseryl-tRNA(Sec)	selenium	transferase,	SepSecS
Alliinase_C	PF04864.13	gi|345006779|ref|YP_004809632.1|	-	0.21	10.5	0.0	0.29	9.9	0.0	1.2	1	0	0	1	1	1	0	Allinase
Phosphodiest	PF01663.22	gi|345006780|ref|YP_004809633.1|	-	1.9e-60	205.4	0.3	2.1e-60	205.2	0.3	1.0	1	0	0	1	1	1	1	Type	I	phosphodiesterase	/	nucleotide	pyrophosphatase
DUF2063	PF09836.9	gi|345006780|ref|YP_004809633.1|	-	0.035	14.3	0.1	0.086	13.1	0.1	1.6	1	0	0	1	1	1	0	Putative	DNA-binding	domain
Sulfatase	PF00884.23	gi|345006780|ref|YP_004809633.1|	-	0.08	12.3	1.4	0.21	10.9	0.4	2.1	3	0	0	3	3	3	0	Sulfatase
TCTP	PF00838.17	gi|345006780|ref|YP_004809633.1|	-	0.098	13.0	0.4	0.18	12.2	0.4	1.4	1	0	0	1	1	1	0	Translationally	controlled	tumour	protein
Aurora-A_bind	PF09041.10	gi|345006780|ref|YP_004809633.1|	-	0.24	11.5	0.7	5.3	7.2	0.1	2.6	2	0	0	2	2	2	0	Aurora-A	binding
OrfB_Zn_ribbon	PF07282.11	gi|345006781|ref|YP_004809634.1|	-	0.088	12.7	2.6	0.38	10.7	2.6	1.9	1	1	0	1	1	1	0	Putative	transposase	DNA-binding	domain
zf-ribbon_3	PF13248.6	gi|345006781|ref|YP_004809634.1|	-	0.25	10.8	4.9	3.9	7.0	0.3	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
Zn-ribbon_8	PF09723.10	gi|345006781|ref|YP_004809634.1|	-	0.3	11.2	0.4	0.3	11.2	0.4	2.2	1	1	1	2	2	2	0	Zinc	ribbon	domain
YhfH	PF14149.6	gi|345006781|ref|YP_004809634.1|	-	3.1	7.9	8.2	36	4.4	7.7	2.2	1	1	0	1	1	1	0	YhfH-like	protein
zf-NADH-PPase	PF09297.11	gi|345006781|ref|YP_004809634.1|	-	3.7	7.3	7.0	2	8.1	1.0	2.7	2	1	0	2	2	2	0	NADH	pyrophosphatase	zinc	ribbon	domain
UvrD-helicase	PF00580.21	gi|345006782|ref|YP_004809635.1|	-	1.9e-26	93.3	0.0	1.9e-25	90.1	0.0	2.2	1	1	0	1	1	1	1	UvrD/REP	helicase	N-terminal	domain
AAA_19	PF13245.6	gi|345006782|ref|YP_004809635.1|	-	1.1e-22	80.9	0.0	3.1e-22	79.5	0.0	1.7	1	0	0	1	1	1	1	AAA	domain
UvrD_C	PF13361.6	gi|345006782|ref|YP_004809635.1|	-	1.8e-17	63.7	0.1	3.1e-10	40.0	0.0	2.4	1	1	0	2	2	2	2	UvrD-like	helicase	C-terminal	domain
UvrD_C_2	PF13538.6	gi|345006782|ref|YP_004809635.1|	-	1.7e-09	37.4	0.2	0.0025	17.6	0.1	2.7	2	0	0	2	2	2	2	UvrD-like	helicase	C-terminal	domain
AAA_30	PF13604.6	gi|345006782|ref|YP_004809635.1|	-	1.9e-08	34.2	0.4	0.00017	21.4	0.0	2.8	3	0	0	3	3	3	2	AAA	domain
Viral_helicase1	PF01443.18	gi|345006782|ref|YP_004809635.1|	-	9.1e-06	25.6	0.0	1.9	8.2	0.0	3.8	3	1	0	3	3	3	3	Viral	(Superfamily	1)	RNA	helicase
Herpes_ori_bp	PF02399.15	gi|345006782|ref|YP_004809635.1|	-	0.00067	17.8	0.0	0.001	17.3	0.0	1.1	1	0	0	1	1	1	1	Origin	of	replication	binding	protein
AAA_11	PF13086.6	gi|345006782|ref|YP_004809635.1|	-	0.00075	19.4	0.0	0.013	15.3	0.0	2.7	3	0	0	3	3	3	1	AAA	domain
AAA_22	PF13401.6	gi|345006782|ref|YP_004809635.1|	-	0.0011	19.3	0.0	1.7	8.9	0.0	3.0	3	0	0	3	3	3	2	AAA	domain
AAA_14	PF13173.6	gi|345006782|ref|YP_004809635.1|	-	0.0077	16.3	0.0	1.6	8.8	0.0	2.6	2	0	0	2	2	2	1	AAA	domain
AAA_12	PF13087.6	gi|345006782|ref|YP_004809635.1|	-	0.021	14.4	0.0	0.35	10.5	0.0	2.3	2	0	0	2	2	2	0	AAA	domain
AAA_17	PF13207.6	gi|345006782|ref|YP_004809635.1|	-	0.087	13.2	0.1	0.49	10.8	0.1	2.3	1	1	0	1	1	1	0	AAA	domain
Peptidase_M24	PF00557.24	gi|345006783|ref|YP_004809636.1|	-	2.2e-40	138.6	0.6	3.1e-40	138.1	0.6	1.2	1	0	0	1	1	1	1	Metallopeptidase	family	M24
DraK_HK_N	PF18092.1	gi|345006783|ref|YP_004809636.1|	-	0.12	12.8	3.6	0.2	12.1	0.1	2.8	3	0	0	3	3	3	0	DraK	Histidine	Kinase	N-terminal	domain
ExoD	PF06055.12	gi|345006784|ref|YP_004809637.1|	-	0.0034	16.8	0.3	0.0036	16.7	0.3	1.1	1	0	0	1	1	1	1	Exopolysaccharide	synthesis,	ExoD
Lum_binding	PF00677.17	gi|345006785|ref|YP_004809638.1|	-	1.1e-46	156.7	1.1	2.2e-24	85.2	0.0	2.0	2	0	0	2	2	2	2	Lumazine	binding	domain
TOBE_2	PF08402.10	gi|345006785|ref|YP_004809638.1|	-	0.045	13.9	0.4	0.78	10.0	0.0	2.7	2	1	0	3	3	3	0	TOBE	domain
HTH_24	PF13412.6	gi|345006786|ref|YP_004809639.1|	-	0.00085	18.8	0.0	0.0013	18.2	0.0	1.3	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
TrmB	PF01978.19	gi|345006786|ref|YP_004809639.1|	-	0.0044	16.9	0.1	0.0058	16.5	0.1	1.2	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
MarR	PF01047.22	gi|345006786|ref|YP_004809639.1|	-	0.0062	16.4	0.0	0.0088	15.9	0.0	1.2	1	0	0	1	1	1	1	MarR	family
GntR	PF00392.21	gi|345006786|ref|YP_004809639.1|	-	0.0095	15.6	0.1	0.014	15.0	0.1	1.3	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	gntR	family
MarR_2	PF12802.7	gi|345006786|ref|YP_004809639.1|	-	0.015	15.2	0.0	0.019	14.8	0.0	1.2	1	0	0	1	1	1	0	MarR	family
TFIIE_alpha	PF02002.17	gi|345006786|ref|YP_004809639.1|	-	0.07	13.0	0.0	0.085	12.7	0.0	1.1	1	0	0	1	1	1	0	TFIIE	alpha	subunit
HTH_11	PF08279.12	gi|345006786|ref|YP_004809639.1|	-	0.072	13.1	0.0	0.1	12.6	0.0	1.2	1	0	0	1	1	1	0	HTH	domain
ABC2_membrane_5	PF13346.6	gi|345006787|ref|YP_004809640.1|	-	0.011	15.2	3.4	0.014	15.0	3.4	1.0	1	0	0	1	1	1	0	ABC-2	family	transporter	protein
DUF3007	PF11460.8	gi|345006787|ref|YP_004809640.1|	-	1.3	9.3	7.3	1.5	9.1	2.5	2.0	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF3007)
ABC_tran	PF00005.27	gi|345006788|ref|YP_004809641.1|	-	5.4e-39	133.8	0.0	6.4e-20	72.1	0.0	2.7	2	1	0	2	2	2	2	ABC	transporter
SMC_N	PF02463.19	gi|345006788|ref|YP_004809641.1|	-	7.9e-14	51.6	5.0	0.00052	19.5	0.0	4.3	4	0	0	4	4	4	3	RecF/RecN/SMC	N	terminal	domain
RLI	PF04068.15	gi|345006788|ref|YP_004809641.1|	-	3.3e-12	46.0	1.0	6.6e-12	45.1	1.0	1.5	1	0	0	1	1	1	1	Possible	Fer4-like	domain	in	RNase	L	inhibitor,	RLI
AAA_21	PF13304.6	gi|345006788|ref|YP_004809641.1|	-	2.7e-10	40.6	5.0	0.18	11.6	0.1	4.3	2	2	1	4	4	4	4	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_16	PF13191.6	gi|345006788|ref|YP_004809641.1|	-	2.9e-09	37.6	0.0	0.019	15.3	0.0	3.4	2	1	1	3	3	3	2	AAA	ATPase	domain
AAA_23	PF13476.6	gi|345006788|ref|YP_004809641.1|	-	5.1e-08	33.7	0.0	0.00087	19.9	0.0	2.3	2	0	0	2	2	2	2	AAA	domain
AAA_29	PF13555.6	gi|345006788|ref|YP_004809641.1|	-	4.3e-05	23.2	0.7	0.14	11.9	0.0	2.4	2	0	0	2	2	2	2	P-loop	containing	region	of	AAA	domain
AAA_22	PF13401.6	gi|345006788|ref|YP_004809641.1|	-	0.00012	22.4	0.4	0.013	15.7	0.0	2.8	3	0	0	3	3	3	1	AAA	domain
RNA_helicase	PF00910.22	gi|345006788|ref|YP_004809641.1|	-	0.00015	22.1	0.0	1.1	9.7	0.0	2.6	2	0	0	2	2	2	2	RNA	helicase
AAA	PF00004.29	gi|345006788|ref|YP_004809641.1|	-	0.00017	22.0	0.0	0.44	11.0	0.0	2.6	2	0	0	2	2	2	2	ATPase	family	associated	with	various	cellular	activities	(AAA)
RsgA_GTPase	PF03193.16	gi|345006788|ref|YP_004809641.1|	-	0.00028	20.8	0.0	0.8	9.6	0.0	2.3	2	0	0	2	2	2	2	RsgA	GTPase
Fer4	PF00037.27	gi|345006788|ref|YP_004809641.1|	-	0.0003	20.5	1.4	0.0003	20.5	1.4	2.7	4	0	0	4	4	3	1	4Fe-4S	binding	domain
AAA_24	PF13479.6	gi|345006788|ref|YP_004809641.1|	-	0.00043	20.1	0.1	0.11	12.3	0.0	2.5	2	1	0	2	2	2	1	AAA	domain
NB-ARC	PF00931.22	gi|345006788|ref|YP_004809641.1|	-	0.00074	18.8	0.0	0.17	11.0	0.0	2.2	2	0	0	2	2	2	1	NB-ARC	domain
AAA_14	PF13173.6	gi|345006788|ref|YP_004809641.1|	-	0.0009	19.3	0.1	4.8	7.2	0.0	3.6	2	2	2	4	4	4	1	AAA	domain
AAA_15	PF13175.6	gi|345006788|ref|YP_004809641.1|	-	0.002	17.9	0.1	2.6	7.6	0.0	2.7	2	1	1	3	3	3	2	AAA	ATPase	domain
AAA_33	PF13671.6	gi|345006788|ref|YP_004809641.1|	-	0.0025	18.0	0.0	1.9	8.6	0.0	2.6	2	0	0	2	2	2	1	AAA	domain
Fer4_6	PF12837.7	gi|345006788|ref|YP_004809641.1|	-	0.0049	16.9	12.5	0.0098	15.9	2.3	2.4	2	0	0	2	2	2	1	4Fe-4S	binding	domain
NACHT	PF05729.12	gi|345006788|ref|YP_004809641.1|	-	0.0057	16.6	0.0	1.7	8.5	0.0	2.4	2	0	0	2	2	2	1	NACHT	domain
Rad17	PF03215.15	gi|345006788|ref|YP_004809641.1|	-	0.0066	16.4	0.0	2.8	7.8	0.0	3.0	3	0	0	3	3	3	1	Rad17	P-loop	domain
MukB	PF04310.12	gi|345006788|ref|YP_004809641.1|	-	0.013	15.3	0.5	5.5	6.7	0.1	2.3	2	0	0	2	2	2	0	MukB	N-terminal
AAA_25	PF13481.6	gi|345006788|ref|YP_004809641.1|	-	0.019	14.6	2.1	5.6	6.5	0.0	3.4	4	0	0	4	4	4	0	AAA	domain
Fer4_10	PF13237.6	gi|345006788|ref|YP_004809641.1|	-	0.024	14.8	11.2	0.5	10.5	1.2	2.2	1	1	1	2	2	2	0	4Fe-4S	dicluster	domain
MMR_HSR1	PF01926.23	gi|345006788|ref|YP_004809641.1|	-	0.036	14.2	0.6	5.1	7.2	0.1	2.8	2	1	0	2	2	2	0	50S	ribosome-binding	GTPase
Fer4_7	PF12838.7	gi|345006788|ref|YP_004809641.1|	-	0.042	14.5	7.7	0.12	12.9	7.8	1.8	1	1	0	1	1	1	0	4Fe-4S	dicluster	domain
AAA_5	PF07728.14	gi|345006788|ref|YP_004809641.1|	-	0.042	13.8	0.2	5	7.1	0.0	2.7	3	0	0	3	3	2	0	AAA	domain	(dynein-related	subfamily)
Fer4_2	PF12797.7	gi|345006788|ref|YP_004809641.1|	-	0.056	13.6	10.6	0.071	13.2	0.8	2.4	2	0	0	2	2	2	0	4Fe-4S	binding	domain
IstB_IS21	PF01695.17	gi|345006788|ref|YP_004809641.1|	-	0.098	12.4	0.5	5.1	6.8	0.0	2.5	2	0	0	2	2	2	0	IstB-like	ATP	binding	protein
MeaB	PF03308.16	gi|345006788|ref|YP_004809641.1|	-	0.14	11.2	1.5	5.5	5.9	0.1	2.2	2	0	0	2	2	2	0	Methylmalonyl	Co-A	mutase-associated	GTPase	MeaB
NTPase_1	PF03266.15	gi|345006788|ref|YP_004809641.1|	-	0.16	11.8	1.8	25	4.8	0.1	3.0	3	0	0	3	3	3	0	NTPase
AAA_28	PF13521.6	gi|345006788|ref|YP_004809641.1|	-	0.19	12.0	0.4	21	5.3	0.0	3.0	3	0	0	3	3	3	0	AAA	domain
Fer4_9	PF13187.6	gi|345006788|ref|YP_004809641.1|	-	0.35	11.1	8.8	1.1	9.5	9.0	1.7	1	1	0	1	1	1	0	4Fe-4S	dicluster	domain
Fer4_21	PF14697.6	gi|345006788|ref|YP_004809641.1|	-	0.49	10.6	7.6	0.98	9.6	7.6	1.5	1	0	0	1	1	1	0	4Fe-4S	dicluster	domain
RimK	PF08443.11	gi|345006789|ref|YP_004809642.1|	-	5.3e-19	68.5	0.0	7.5e-19	68.1	0.0	1.1	1	0	0	1	1	1	1	RimK-like	ATP-grasp	domain
GSH-S_ATP	PF02955.16	gi|345006789|ref|YP_004809642.1|	-	1e-09	38.0	0.0	1.5e-09	37.5	0.0	1.2	1	0	0	1	1	1	1	Prokaryotic	glutathione	synthetase,	ATP-grasp	domain
ATPgrasp_ST	PF14397.6	gi|345006789|ref|YP_004809642.1|	-	5e-07	29.2	0.0	0.02	14.2	0.0	2.6	2	1	1	3	3	3	2	Sugar-transfer	associated	ATP-grasp
ATP-grasp_3	PF02655.14	gi|345006789|ref|YP_004809642.1|	-	4.5e-06	26.8	0.0	9.5e-06	25.7	0.0	1.5	1	1	0	1	1	1	1	ATP-grasp	domain
ArsA_HSP20	PF17886.1	gi|345006790|ref|YP_004809643.1|	-	1.6e-16	59.6	0.0	2.3e-16	59.1	0.0	1.2	1	0	0	1	1	1	1	HSP20-like	domain	found	in	ArsA
HSP20	PF00011.21	gi|345006790|ref|YP_004809643.1|	-	1.3e-07	31.7	0.0	0.00025	21.2	0.0	2.1	1	1	1	2	2	2	2	Hsp20/alpha	crystallin	family
GvpH	PF05455.11	gi|345006790|ref|YP_004809643.1|	-	1.4e-05	25.2	0.2	1.6e-05	25.0	0.2	1.1	1	0	0	1	1	1	1	GvpH
PIH1_CS	PF18201.1	gi|345006790|ref|YP_004809643.1|	-	0.11	13.0	0.0	0.14	12.6	0.0	1.2	1	0	0	1	1	1	0	PIH1	CS-like	domain
PGK	PF00162.19	gi|345006791|ref|YP_004809644.1|	-	1.2e-96	324.0	0.0	1.4e-96	323.7	0.0	1.0	1	0	0	1	1	1	1	Phosphoglycerate	kinase
Gp_dh_C	PF02800.20	gi|345006792|ref|YP_004809645.1|	-	1.1e-19	70.5	0.0	1.7e-19	70.0	0.0	1.3	1	0	0	1	1	1	1	Glyceraldehyde	3-phosphate	dehydrogenase,	C-terminal	domain
DapB_N	PF01113.20	gi|345006792|ref|YP_004809645.1|	-	8.8e-10	38.8	0.5	2.1e-09	37.6	0.4	1.7	1	1	0	1	1	1	1	Dihydrodipicolinate	reductase,	N-terminus
Gp_dh_N	PF00044.24	gi|345006792|ref|YP_004809645.1|	-	5.7e-05	23.4	0.0	0.00023	21.4	0.0	2.0	1	1	0	1	1	1	1	Glyceraldehyde	3-phosphate	dehydrogenase,	NAD	binding	domain
NAD_binding_3	PF03447.16	gi|345006792|ref|YP_004809645.1|	-	0.00012	22.7	0.6	0.00085	20.0	0.1	2.4	3	0	0	3	3	3	1	Homoserine	dehydrogenase,	NAD	binding	domain
2-Hacid_dh_C	PF02826.19	gi|345006792|ref|YP_004809645.1|	-	0.0014	18.1	0.6	0.012	14.9	0.6	2.2	1	1	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
Sacchrp_dh_NADP	PF03435.18	gi|345006792|ref|YP_004809645.1|	-	0.003	17.8	0.1	0.0078	16.5	0.1	1.7	1	0	0	1	1	1	1	Saccharopine	dehydrogenase	NADP	binding	domain
GFO_IDH_MocA	PF01408.22	gi|345006792|ref|YP_004809645.1|	-	0.0084	16.9	1.2	0.021	15.6	0.1	2.3	2	1	1	3	3	3	1	Oxidoreductase	family,	NAD-binding	Rossmann	fold
TrkA_N	PF02254.18	gi|345006792|ref|YP_004809645.1|	-	0.014	15.7	0.3	0.041	14.1	0.3	1.9	1	0	0	1	1	1	0	TrkA-N	domain
3HCDH_N	PF02737.18	gi|345006792|ref|YP_004809645.1|	-	0.1	12.5	0.3	0.1	12.5	0.3	1.8	2	0	0	2	2	2	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
DMT_YdcZ	PF04657.13	gi|345006793|ref|YP_004809646.1|	-	0.49	10.7	14.5	0.81	10.0	14.5	1.3	1	0	0	1	1	1	0	Putative	inner	membrane	exporter,	YdcZ
SLATT_1	PF18181.1	gi|345006793|ref|YP_004809646.1|	-	4.9	7.1	8.2	8.8	6.3	1.5	2.2	2	0	0	2	2	2	0	SMODS	and	SLOG-associating	2TM	effector	domain	1
CPP1-like	PF11833.8	gi|345006794|ref|YP_004809647.1|	-	0.019	14.6	5.8	0.027	14.1	5.7	1.3	1	1	0	1	1	1	0	Protein	CHAPERONE-LIKE	PROTEIN	OF	POR1-like
DUF4229	PF14012.6	gi|345006794|ref|YP_004809647.1|	-	0.093	12.8	0.3	0.093	12.8	0.3	2.7	1	1	2	3	3	3	0	Protein	of	unknown	function	(DUF4229)
DUF4282	PF14110.6	gi|345006794|ref|YP_004809647.1|	-	6.2	7.6	0.0	6.2	7.6	0.0	3.0	2	1	1	3	3	3	0	Domain	of	unknown	function	(DUF4282)
Peptidase_M29	PF02073.15	gi|345006795|ref|YP_004809648.1|	-	7.9e-11	41.4	0.6	3.5e-09	35.9	0.2	2.0	2	0	0	2	2	2	2	Thermophilic	metalloprotease	(M29)
Thi4	PF01946.17	gi|345006797|ref|YP_004809650.1|	-	6.7e-59	199.0	0.2	2.4e-47	161.2	0.1	2.1	1	1	1	2	2	2	2	Thi4	family
FAD_oxidored	PF12831.7	gi|345006797|ref|YP_004809650.1|	-	1.6e-10	40.9	0.1	2.5e-10	40.3	0.1	1.3	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
FAD_binding_2	PF00890.24	gi|345006797|ref|YP_004809650.1|	-	4.9e-10	39.1	0.8	2.4e-07	30.2	0.2	2.2	1	1	1	2	2	2	2	FAD	binding	domain
FAD_binding_3	PF01494.19	gi|345006797|ref|YP_004809650.1|	-	4.2e-09	36.1	0.0	7e-09	35.4	0.0	1.3	1	0	0	1	1	1	1	FAD	binding	domain
DAO	PF01266.24	gi|345006797|ref|YP_004809650.1|	-	1e-08	35.2	0.9	1.3e-05	24.9	0.1	2.3	1	1	0	2	2	2	2	FAD	dependent	oxidoreductase
HI0933_like	PF03486.14	gi|345006797|ref|YP_004809650.1|	-	1.4e-08	33.9	0.1	1.9e-08	33.5	0.1	1.2	1	0	0	1	1	1	1	HI0933-like	protein
NAD_binding_8	PF13450.6	gi|345006797|ref|YP_004809650.1|	-	2.5e-08	34.0	0.1	6.3e-08	32.7	0.1	1.6	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
Pyr_redox_2	PF07992.14	gi|345006797|ref|YP_004809650.1|	-	3e-07	30.0	0.0	9.1e-07	28.4	0.0	1.5	1	1	1	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
Trp_halogenase	PF04820.14	gi|345006797|ref|YP_004809650.1|	-	8.7e-06	24.8	0.1	0.0028	16.6	0.0	2.1	2	0	0	2	2	2	2	Tryptophan	halogenase
NAD_binding_9	PF13454.6	gi|345006797|ref|YP_004809650.1|	-	2.3e-05	24.4	0.2	7e-05	22.9	0.1	1.8	2	0	0	2	2	2	1	FAD-NAD(P)-binding
Lycopene_cycl	PF05834.12	gi|345006797|ref|YP_004809650.1|	-	4.9e-05	22.5	1.2	0.0034	16.5	0.3	2.2	2	0	0	2	2	2	1	Lycopene	cyclase	protein
Pyr_redox_3	PF13738.6	gi|345006797|ref|YP_004809650.1|	-	8.4e-05	22.0	0.0	0.00013	21.3	0.0	1.2	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox	PF00070.27	gi|345006797|ref|YP_004809650.1|	-	0.00012	22.6	0.5	0.00033	21.1	0.2	1.8	2	0	0	2	2	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Shikimate_DH	PF01488.20	gi|345006797|ref|YP_004809650.1|	-	0.0021	18.1	0.0	0.89	9.6	0.0	2.2	2	0	0	2	2	2	2	Shikimate	/	quinate	5-dehydrogenase
Amino_oxidase	PF01593.24	gi|345006797|ref|YP_004809650.1|	-	0.0033	16.8	0.0	0.006	15.9	0.0	1.4	1	0	0	1	1	1	1	Flavin	containing	amine	oxidoreductase
NAD_binding_7	PF13241.6	gi|345006797|ref|YP_004809650.1|	-	0.011	16.2	0.0	0.02	15.3	0.0	1.6	1	1	0	1	1	1	0	Putative	NAD(P)-binding
GIDA	PF01134.22	gi|345006797|ref|YP_004809650.1|	-	0.011	14.9	0.0	0.012	14.7	0.0	1.2	1	0	0	1	1	1	0	Glucose	inhibited	division	protein	A
TrkA_N	PF02254.18	gi|345006797|ref|YP_004809650.1|	-	0.039	14.2	0.1	0.083	13.2	0.1	1.6	1	0	0	1	1	1	0	TrkA-N	domain
HMG_CoA_synt_N	PF01154.17	gi|345006799|ref|YP_004809652.1|	-	1.8e-26	93.0	0.1	2.9e-26	92.4	0.1	1.3	1	0	0	1	1	1	1	Hydroxymethylglutaryl-coenzyme	A	synthase	N	terminal
HMG_CoA_synt_C	PF08540.10	gi|345006799|ref|YP_004809652.1|	-	1.9e-21	77.0	0.0	3e-21	76.3	0.0	1.2	1	0	0	1	1	1	1	Hydroxymethylglutaryl-coenzyme	A	synthase	C	terminal
DUF1493	PF07377.12	gi|345006799|ref|YP_004809652.1|	-	0.041	14.4	1.4	0.89	10.0	0.5	2.4	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1493)
Pilin_N	PF07790.11	gi|345006800|ref|YP_004809653.1|	-	6.7e-12	46.2	1.6	6.7e-12	46.2	1.6	5.3	4	2	2	6	6	6	2	Archaeal	Type	IV	pilin,	N-terminal
PKD	PF00801.20	gi|345006800|ref|YP_004809653.1|	-	1.1e-11	44.4	0.5	1.1e-11	44.4	0.5	4.8	5	1	0	5	5	5	1	PKD	domain
Big_3_2	PF12245.8	gi|345006800|ref|YP_004809653.1|	-	8.9e-06	26.0	10.1	0.00017	21.9	1.7	3.0	2	0	0	2	2	2	2	Bacterial	Ig-like	domain
CopC	PF04234.12	gi|345006800|ref|YP_004809653.1|	-	0.0062	17.6	18.0	0.61	11.2	0.5	5.6	4	1	1	5	5	5	1	CopC	domain
gp45-slide_C	PF09116.10	gi|345006800|ref|YP_004809653.1|	-	0.031	14.3	0.1	0.15	12.1	0.1	2.2	1	0	0	1	1	1	0	gp45	sliding	clamp,	C	terminal
TcfC	PF16967.5	gi|345006800|ref|YP_004809653.1|	-	0.04	13.4	9.0	0.076	12.5	0.1	3.7	4	0	0	4	4	4	0	E-set	like	domain
MG2	PF01835.19	gi|345006800|ref|YP_004809653.1|	-	0.15	12.5	6.3	32	5.1	0.0	4.7	4	1	0	4	4	4	0	MG2	domain
fn3	PF00041.21	gi|345006800|ref|YP_004809653.1|	-	0.37	11.2	13.7	0.68	10.3	0.1	4.8	5	0	0	5	5	5	0	Fibronectin	type	III	domain
DUF4442	PF14539.6	gi|345006800|ref|YP_004809653.1|	-	0.39	10.8	5.8	0.9	9.7	0.1	3.8	4	1	0	4	4	4	0	Domain	of	unknown	function	(DUF4442)
Y_Y_Y	PF07495.13	gi|345006800|ref|YP_004809653.1|	-	0.72	9.9	3.2	57	3.8	0.1	3.8	3	0	0	3	3	3	0	Y_Y_Y	domain
Filamin	PF00630.19	gi|345006800|ref|YP_004809653.1|	-	1.3	9.9	6.6	3.2	8.6	0.2	4.1	3	3	0	3	3	3	0	Filamin/ABP280	repeat
BsuPI	PF12690.7	gi|345006800|ref|YP_004809653.1|	-	3.2	7.8	6.1	7	6.7	0.4	3.9	3	2	0	3	3	3	0	Intracellular	proteinase	inhibitor
Big_1	PF02369.16	gi|345006801|ref|YP_004809654.1|	-	1e-05	25.5	3.7	1e-05	25.5	3.7	3.7	3	1	0	3	3	3	1	Bacterial	Ig-like	domain	(group	1)
Invasin_D3	PF09134.10	gi|345006801|ref|YP_004809654.1|	-	7.5e-05	23.0	4.9	7.5e-05	23.0	4.9	4.4	4	1	2	6	6	6	1	Invasin,	domain	3
DUF4198	PF10670.9	gi|345006801|ref|YP_004809654.1|	-	0.047	14.1	0.1	0.12	12.7	0.1	1.7	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4198)
DUF824	PF05688.11	gi|345006801|ref|YP_004809654.1|	-	0.068	13.0	0.5	0.29	11.0	0.5	2.1	1	0	0	1	1	1	0	Salmonella	repeat	of	unknown	function	(DUF824)
BNR_4	PF15892.5	gi|345006801|ref|YP_004809654.1|	-	0.095	12.0	0.2	0.095	12.0	0.2	1.9	2	1	0	2	2	2	0	BNR	repeat-containing	family	member
MG4	PF17789.1	gi|345006801|ref|YP_004809654.1|	-	0.21	11.7	4.8	0.22	11.7	0.4	3.0	4	0	0	4	4	4	0	Macroglobulin	domain	MG4
Pilin_N	PF07790.11	gi|345006801|ref|YP_004809654.1|	-	0.38	11.7	2.9	0.7	10.8	0.1	2.9	3	1	0	3	3	3	0	Archaeal	Type	IV	pilin,	N-terminal
DUF2150	PF09920.9	gi|345006802|ref|YP_004809655.1|	-	1.3e-66	224.2	9.6	1.5e-66	224.0	9.6	1.0	1	0	0	1	1	1	1	Uncharacterized	protein	conserved	in	archaea	(DUF2150)
DUF945	PF06097.11	gi|345006802|ref|YP_004809655.1|	-	0.0025	17.0	0.3	0.0034	16.6	0.3	1.1	1	0	0	1	1	1	1	Bacterial	protein	of	unknown	function	(DUF945)
TatD_DNase	PF01026.21	gi|345006803|ref|YP_004809656.1|	-	8.2e-17	61.4	0.1	2.3e-15	56.6	0.1	2.0	1	1	0	1	1	1	1	TatD	related	DNase
YdjM	PF04307.14	gi|345006804|ref|YP_004809657.1|	-	4.7e-13	48.8	3.9	1e-12	47.7	3.9	1.5	1	1	0	1	1	1	1	LexA-binding,	inner	membrane-associated	putative	hydrolase
Acetyltransf_1	PF00583.25	gi|345006805|ref|YP_004809658.1|	-	3e-14	53.2	0.0	3.8e-14	52.9	0.0	1.1	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_7	PF13508.7	gi|345006805|ref|YP_004809658.1|	-	3.2e-09	37.1	0.0	4.4e-09	36.6	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_3	PF13302.7	gi|345006805|ref|YP_004809658.1|	-	5.9e-09	36.7	0.1	8.4e-09	36.2	0.1	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_10	PF13673.7	gi|345006805|ref|YP_004809658.1|	-	7.1e-09	35.7	0.0	9e-09	35.4	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_8	PF13523.6	gi|345006805|ref|YP_004809658.1|	-	1.3e-05	24.9	0.0	3.9e-05	23.4	0.0	1.8	2	0	0	2	2	2	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_CG	PF14542.6	gi|345006805|ref|YP_004809658.1|	-	0.00023	21.2	0.0	0.00043	20.4	0.0	1.5	1	0	0	1	1	1	1	GCN5-related	N-acetyl-transferase
FR47	PF08445.10	gi|345006805|ref|YP_004809658.1|	-	0.0058	16.6	0.0	0.015	15.3	0.0	1.6	2	0	0	2	2	2	1	FR47-like	protein
Acetyltransf_4	PF13420.7	gi|345006805|ref|YP_004809658.1|	-	0.0096	16.1	0.0	0.013	15.7	0.0	1.1	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_9	PF13527.7	gi|345006805|ref|YP_004809658.1|	-	0.0098	16.0	0.0	0.018	15.1	0.0	1.5	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_3	PF13302.7	gi|345006806|ref|YP_004809659.1|	-	7.9e-15	55.8	0.0	1e-14	55.3	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Regulator_TrmB	PF11495.8	gi|345006807|ref|YP_004809660.1|	-	2.2e-51	174.3	0.9	3.1e-51	173.8	0.9	1.2	1	0	0	1	1	1	1	Archaeal	transcriptional	regulator	TrmB
TrmB	PF01978.19	gi|345006807|ref|YP_004809660.1|	-	3.5e-20	71.6	0.3	1.3e-19	69.8	0.0	2.1	3	0	0	3	3	3	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_20	PF12840.7	gi|345006807|ref|YP_004809660.1|	-	5.2e-05	23.2	0.1	0.00023	21.2	0.0	2.1	2	0	0	2	2	2	1	Helix-turn-helix	domain
MarR_2	PF12802.7	gi|345006807|ref|YP_004809660.1|	-	0.00014	21.6	0.0	0.00052	19.9	0.0	1.9	2	0	0	2	2	2	1	MarR	family
HTH_IclR	PF09339.10	gi|345006807|ref|YP_004809660.1|	-	0.0013	18.5	0.0	0.0034	17.2	0.0	1.7	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
HTH_5	PF01022.20	gi|345006807|ref|YP_004809660.1|	-	0.0015	18.4	0.0	0.035	14.0	0.0	2.4	2	0	0	2	2	2	1	Bacterial	regulatory	protein,	arsR	family
Rrf2	PF02082.20	gi|345006807|ref|YP_004809660.1|	-	0.031	14.6	0.0	0.081	13.3	0.0	1.7	1	0	0	1	1	1	0	Transcriptional	regulator
HTH_24	PF13412.6	gi|345006807|ref|YP_004809660.1|	-	0.13	11.8	0.0	3	7.5	0.0	2.5	2	0	0	2	2	2	0	Winged	helix-turn-helix	DNA-binding
Pribosyltran	PF00156.27	gi|345006808|ref|YP_004809661.1|	-	3.5e-18	65.6	0.0	5.1e-18	65.1	0.0	1.2	1	0	0	1	1	1	1	Phosphoribosyl	transferase	domain
HTH_23	PF13384.6	gi|345006808|ref|YP_004809661.1|	-	0.0011	18.8	0.0	0.0032	17.2	0.0	1.7	2	0	0	2	2	2	1	Homeodomain-like	domain
HTH_7	PF02796.15	gi|345006808|ref|YP_004809661.1|	-	0.01	15.9	0.0	0.021	14.9	0.0	1.5	1	0	0	1	1	1	0	Helix-turn-helix	domain	of	resolvase
HTH_11	PF08279.12	gi|345006808|ref|YP_004809661.1|	-	0.026	14.4	0.3	0.088	12.8	0.1	1.9	2	0	0	2	2	2	0	HTH	domain
HTH_Crp_2	PF13545.6	gi|345006808|ref|YP_004809661.1|	-	0.034	14.1	0.2	0.22	11.5	0.0	2.1	1	1	1	2	2	2	0	Crp-like	helix-turn-helix	domain
PRTase_2	PF15609.6	gi|345006808|ref|YP_004809661.1|	-	0.036	13.6	0.4	0.16	11.5	0.4	1.9	1	1	0	1	1	1	0	Phosphoribosyl	transferase
Sigma70_r4	PF04545.16	gi|345006808|ref|YP_004809661.1|	-	0.041	13.4	0.0	0.09	12.3	0.0	1.6	1	0	0	1	1	1	0	Sigma-70,	region	4
GerE	PF00196.19	gi|345006808|ref|YP_004809661.1|	-	0.045	13.3	0.0	0.091	12.3	0.0	1.5	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	luxR	family
HTH_31	PF13560.6	gi|345006808|ref|YP_004809661.1|	-	0.083	13.3	1.7	0.54	10.6	1.0	2.7	2	1	0	2	2	2	0	Helix-turn-helix	domain
HTH_24	PF13412.6	gi|345006808|ref|YP_004809661.1|	-	0.12	12.0	0.0	0.24	11.0	0.0	1.5	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
HTH_38	PF13936.6	gi|345006808|ref|YP_004809661.1|	-	0.2	11.5	0.1	0.5	10.2	0.1	1.6	1	0	0	1	1	1	0	Helix-turn-helix	domain
Glu_dehyd_C	PF16912.5	gi|345006809|ref|YP_004809662.1|	-	7.2e-97	323.0	0.0	1.1e-96	322.3	0.0	1.3	1	0	0	1	1	1	1	Glucose	dehydrogenase	C-terminus
ADH_N	PF08240.12	gi|345006809|ref|YP_004809662.1|	-	3.1e-09	36.7	0.0	4.5e-09	36.2	0.0	1.2	1	0	0	1	1	1	1	Alcohol	dehydrogenase	GroES-like	domain
ADH_zinc_N	PF00107.26	gi|345006809|ref|YP_004809662.1|	-	2.7e-05	24.2	0.0	4.3e-05	23.5	0.0	1.3	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
ADH_N_2	PF16884.5	gi|345006809|ref|YP_004809662.1|	-	0.0045	16.9	0.0	0.0094	15.8	0.0	1.4	1	0	0	1	1	1	1	N-terminal	domain	of	oxidoreductase
MCR	PF18509.1	gi|345006809|ref|YP_004809662.1|	-	0.058	13.0	0.6	0.76	9.4	0.3	2.3	2	0	0	2	2	2	0	Magnetochrome	domain
Hydrolase_3	PF08282.12	gi|345006810|ref|YP_004809663.1|	-	1.9e-09	37.6	0.0	7.4e-05	22.6	0.0	2.1	2	0	0	2	2	2	2	haloacid	dehalogenase-like	hydrolase
HemX	PF04375.14	gi|345006810|ref|YP_004809663.1|	-	0.065	12.5	0.0	0.11	11.8	0.0	1.2	1	0	0	1	1	1	0	HemX,	putative	uroporphyrinogen-III	C-methyltransferase
DHDPS	PF00701.22	gi|345006811|ref|YP_004809664.1|	-	3.9e-64	216.2	0.0	4.4e-64	216.0	0.0	1.0	1	0	0	1	1	1	1	Dihydrodipicolinate	synthetase	family
ABC_tran	PF00005.27	gi|345006812|ref|YP_004809665.1|	-	8.3e-33	113.8	0.0	1.2e-32	113.3	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
oligo_HPY	PF08352.12	gi|345006812|ref|YP_004809665.1|	-	4.4e-16	59.1	0.1	8.5e-16	58.2	0.1	1.5	1	0	0	1	1	1	1	Oligopeptide/dipeptide	transporter,	C-terminal	region
AAA_21	PF13304.6	gi|345006812|ref|YP_004809665.1|	-	5.9e-06	26.3	0.3	0.051	13.4	0.0	2.1	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_22	PF13401.6	gi|345006812|ref|YP_004809665.1|	-	0.0004	20.7	0.1	0.0024	18.2	0.1	2.0	1	1	0	1	1	1	1	AAA	domain
AAA_13	PF13166.6	gi|345006812|ref|YP_004809665.1|	-	0.0083	14.8	0.5	0.37	9.4	0.0	2.6	2	1	0	3	3	3	1	AAA	domain
AAA_16	PF13191.6	gi|345006812|ref|YP_004809665.1|	-	0.0092	16.4	0.3	0.017	15.6	0.3	1.6	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA	PF00004.29	gi|345006812|ref|YP_004809665.1|	-	0.017	15.5	0.1	0.059	13.8	0.1	2.1	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_18	PF13238.6	gi|345006812|ref|YP_004809665.1|	-	0.027	15.0	0.0	0.06	13.9	0.0	1.6	1	0	0	1	1	1	0	AAA	domain
AAA_5	PF07728.14	gi|345006812|ref|YP_004809665.1|	-	0.046	13.7	0.0	0.1	12.6	0.0	1.6	1	0	0	1	1	1	0	AAA	domain	(dynein-related	subfamily)
RsgA_GTPase	PF03193.16	gi|345006812|ref|YP_004809665.1|	-	0.05	13.5	0.1	0.084	12.8	0.1	1.3	1	0	0	1	1	1	0	RsgA	GTPase
PduV-EutP	PF10662.9	gi|345006812|ref|YP_004809665.1|	-	0.095	12.4	0.1	0.32	10.7	0.1	1.9	1	0	0	1	1	1	0	Ethanolamine	utilisation	-	propanediol	utilisation
TniB	PF05621.11	gi|345006812|ref|YP_004809665.1|	-	0.14	11.5	0.1	4.3	6.7	0.0	2.3	2	0	0	2	2	2	0	Bacterial	TniB	protein
tRNA_lig_kinase	PF08303.11	gi|345006812|ref|YP_004809665.1|	-	0.21	11.7	0.0	0.36	10.9	0.0	1.3	1	0	0	1	1	1	0	tRNA	ligase	kinase	domain
ABC_tran	PF00005.27	gi|345006813|ref|YP_004809666.1|	-	1.7e-26	93.4	0.0	2.3e-26	92.9	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
oligo_HPY	PF08352.12	gi|345006813|ref|YP_004809666.1|	-	4.2e-20	72.0	0.0	7.3e-20	71.3	0.0	1.4	1	0	0	1	1	1	1	Oligopeptide/dipeptide	transporter,	C-terminal	region
AAA_22	PF13401.6	gi|345006813|ref|YP_004809666.1|	-	6.2e-06	26.5	0.1	0.00016	22.0	0.1	2.6	2	1	0	2	2	2	1	AAA	domain
AAA_21	PF13304.6	gi|345006813|ref|YP_004809666.1|	-	0.015	15.1	0.0	0.34	10.7	0.0	2.1	2	0	0	2	2	2	0	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_16	PF13191.6	gi|345006813|ref|YP_004809666.1|	-	0.032	14.6	0.1	0.14	12.5	0.1	2.0	1	1	1	2	2	2	0	AAA	ATPase	domain
AAA_25	PF13481.6	gi|345006813|ref|YP_004809666.1|	-	0.041	13.5	0.1	7.7	6.0	0.0	2.4	2	0	0	2	2	2	0	AAA	domain
DUF2075	PF09848.9	gi|345006813|ref|YP_004809666.1|	-	0.07	12.4	0.0	0.11	11.7	0.0	1.3	1	0	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2075)
SMC_N	PF02463.19	gi|345006813|ref|YP_004809666.1|	-	0.079	12.4	0.0	0.14	11.6	0.0	1.4	1	1	0	1	1	1	0	RecF/RecN/SMC	N	terminal	domain
DUF87	PF01935.17	gi|345006813|ref|YP_004809666.1|	-	0.082	13.0	0.3	0.17	12.0	0.3	1.4	1	0	0	1	1	1	0	Helicase	HerA,	central	domain
AAA	PF00004.29	gi|345006813|ref|YP_004809666.1|	-	0.1	13.0	0.0	1.2	9.6	0.0	2.1	2	0	0	2	2	2	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
BPD_transp_1	PF00528.22	gi|345006814|ref|YP_004809667.1|	-	4.9e-25	88.3	9.3	4.9e-25	88.3	9.3	1.4	2	0	0	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
OppC_N	PF12911.7	gi|345006814|ref|YP_004809667.1|	-	8.6e-07	28.8	0.4	8.6e-07	28.8	0.4	2.8	2	0	0	2	2	2	1	N-terminal	TM	domain	of	oligopeptide	transport	permease	C
BPD_transp_1	PF00528.22	gi|345006815|ref|YP_004809668.1|	-	5.9e-37	127.2	18.6	5.9e-37	127.2	18.6	1.8	2	0	0	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
SBP_bac_5	PF00496.22	gi|345006816|ref|YP_004809669.1|	-	4.2e-71	239.9	4.4	5.9e-71	239.4	4.4	1.1	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	proteins,	family	5	Middle
PROCT	PF08084.11	gi|345006816|ref|YP_004809669.1|	-	0.047	13.6	0.0	0.12	12.3	0.0	1.6	1	0	0	1	1	1	0	PROCT	(NUC072)	domain
DDE_Tnp_IS1595	PF12762.7	gi|345006817|ref|YP_004809670.1|	-	6.8e-21	74.9	0.0	1.1e-20	74.2	0.0	1.4	1	0	0	1	1	1	1	ISXO2-like	transposase	domain
Zn_Tnp_IS1595	PF12760.7	gi|345006817|ref|YP_004809670.1|	-	1.5e-07	31.3	4.1	2.7e-07	30.5	4.1	1.4	1	0	0	1	1	1	1	Transposase	zinc-ribbon	domain
DUF2089	PF09862.9	gi|345006817|ref|YP_004809670.1|	-	0.0028	17.7	0.2	0.0049	16.9	0.2	1.5	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF2089)
Zn_Tnp_IS1	PF03811.13	gi|345006817|ref|YP_004809670.1|	-	0.0055	16.4	6.1	0.0055	16.4	6.1	1.7	2	0	0	2	2	2	1	InsA	N-terminal	domain
DpnI	PF06044.12	gi|345006817|ref|YP_004809670.1|	-	0.037	13.7	0.8	0.063	12.9	0.8	1.3	1	0	0	1	1	1	0	Dam-replacing	family
CoiA	PF06054.11	gi|345006817|ref|YP_004809670.1|	-	0.088	11.9	0.1	0.13	11.3	0.1	1.4	1	0	0	1	1	1	0	Competence	protein	CoiA-like	family
DUF326	PF03860.16	gi|345006818|ref|YP_004809671.1|	-	0.0085	16.0	6.6	0.0085	16.0	6.6	5.5	5	1	0	5	5	5	4	Domain	of	Unknown	Function	(DUF326)
BAR	PF03114.18	gi|345006818|ref|YP_004809671.1|	-	0.037	13.7	0.1	0.058	13.0	0.1	1.4	1	1	0	1	1	1	0	BAR	domain
MR_MLE_C	PF13378.6	gi|345006819|ref|YP_004809672.1|	-	1.6e-56	191.3	0.9	2.4e-56	190.8	0.9	1.2	1	0	0	1	1	1	1	Enolase	C-terminal	domain-like
MR_MLE_N	PF02746.16	gi|345006819|ref|YP_004809672.1|	-	4.7e-15	55.8	0.1	2.3e-14	53.6	0.1	2.1	2	0	0	2	2	2	1	Mandelate	racemase	/	muconate	lactonizing	enzyme,	N-terminal	domain
Amidohydro_2	PF04909.14	gi|345006819|ref|YP_004809672.1|	-	0.0094	15.8	0.7	0.029	14.1	0.4	1.8	2	0	0	2	2	2	1	Amidohydrolase
SBP_bac_11	PF13531.6	gi|345006819|ref|YP_004809672.1|	-	0.014	15.2	0.1	0.026	14.3	0.1	1.4	1	1	0	1	1	1	0	Bacterial	extracellular	solute-binding	protein
PfkB	PF00294.24	gi|345006820|ref|YP_004809673.1|	-	2.4e-45	155.1	1.1	3e-45	154.8	1.1	1.0	1	0	0	1	1	1	1	pfkB	family	carbohydrate	kinase
MYCBPAP	PF14646.6	gi|345006820|ref|YP_004809673.1|	-	0.11	11.4	0.0	0.15	11.0	0.0	1.1	1	0	0	1	1	1	0	MYCBP-associated	protein	family
AAA	PF00004.29	gi|345006821|ref|YP_004809674.1|	-	3.3e-11	43.7	0.0	3.4e-10	40.5	0.0	2.4	2	0	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
RuvB_N	PF05496.12	gi|345006821|ref|YP_004809674.1|	-	5e-05	23.1	0.0	9e-05	22.3	0.0	1.4	1	0	0	1	1	1	1	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
AAA_30	PF13604.6	gi|345006821|ref|YP_004809674.1|	-	5.8e-05	22.9	1.6	0.00013	21.8	1.6	1.6	1	1	0	1	1	1	1	AAA	domain
AAA_22	PF13401.6	gi|345006821|ref|YP_004809674.1|	-	0.00012	22.4	0.0	0.047	13.9	0.0	3.3	2	1	0	2	2	2	1	AAA	domain
AAA_5	PF07728.14	gi|345006821|ref|YP_004809674.1|	-	0.00091	19.2	0.0	0.004	17.2	0.0	2.1	2	1	0	2	2	2	1	AAA	domain	(dynein-related	subfamily)
AAA_25	PF13481.6	gi|345006821|ref|YP_004809674.1|	-	0.0011	18.6	0.1	0.053	13.1	0.0	3.0	3	0	0	3	3	3	1	AAA	domain
AAA_16	PF13191.6	gi|345006821|ref|YP_004809674.1|	-	0.002	18.5	1.2	0.011	16.1	0.0	2.9	2	2	0	2	2	2	1	AAA	ATPase	domain
IstB_IS21	PF01695.17	gi|345006821|ref|YP_004809674.1|	-	0.0037	17.0	0.1	0.0082	15.9	0.0	1.6	2	0	0	2	2	2	1	IstB-like	ATP	binding	protein
AAA_28	PF13521.6	gi|345006821|ref|YP_004809674.1|	-	0.0038	17.5	0.0	0.011	15.9	0.0	1.9	1	0	0	1	1	1	1	AAA	domain
AAA_18	PF13238.6	gi|345006821|ref|YP_004809674.1|	-	0.0042	17.6	0.0	0.051	14.1	0.0	2.3	1	1	0	2	2	2	1	AAA	domain
Zeta_toxin	PF06414.12	gi|345006821|ref|YP_004809674.1|	-	0.011	15.0	0.0	0.023	14.0	0.0	1.4	1	0	0	1	1	1	0	Zeta	toxin
RNA_helicase	PF00910.22	gi|345006821|ref|YP_004809674.1|	-	0.021	15.2	0.0	0.061	13.7	0.0	1.8	1	0	0	1	1	1	0	RNA	helicase
AAA_33	PF13671.6	gi|345006821|ref|YP_004809674.1|	-	0.038	14.2	0.0	0.092	12.9	0.0	1.6	1	0	0	1	1	1	0	AAA	domain
AAA_assoc_2	PF16193.5	gi|345006821|ref|YP_004809674.1|	-	0.054	13.8	0.1	0.14	12.5	0.1	1.8	1	0	0	1	1	1	0	AAA	C-terminal	domain
RsgA_GTPase	PF03193.16	gi|345006821|ref|YP_004809674.1|	-	0.14	12.1	0.0	0.23	11.4	0.0	1.3	1	0	0	1	1	1	0	RsgA	GTPase
DUF4777	PF16007.5	gi|345006821|ref|YP_004809674.1|	-	0.14	12.4	0.0	0.37	11.1	0.0	1.7	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4777)
Sigma54_activat	PF00158.26	gi|345006821|ref|YP_004809674.1|	-	0.16	11.7	0.2	8.1	6.1	0.0	2.6	2	1	1	3	3	3	0	Sigma-54	interaction	domain
AAA_7	PF12775.7	gi|345006821|ref|YP_004809674.1|	-	0.23	11.0	0.0	0.4	10.2	0.0	1.4	1	0	0	1	1	1	0	P-loop	containing	dynein	motor	region
AAA_6	PF12774.7	gi|345006821|ref|YP_004809674.1|	-	0.41	9.6	0.7	0.75	8.7	0.0	1.7	2	0	0	2	2	2	0	Hydrolytic	ATP	binding	site	of	dynein	motor	region
ABC_tran	PF00005.27	gi|345006823|ref|YP_004809676.1|	-	1.2e-35	123.0	0.0	1.6e-35	122.6	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|345006823|ref|YP_004809676.1|	-	3.3e-11	43.6	0.0	2.2e-05	24.4	0.0	2.1	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|345006823|ref|YP_004809676.1|	-	2.1e-10	40.4	0.3	1.7e-08	34.2	0.3	2.1	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_22	PF13401.6	gi|345006823|ref|YP_004809676.1|	-	6.5e-05	23.2	0.1	0.00047	20.4	0.1	2.0	1	1	0	1	1	1	1	AAA	domain
AAA_29	PF13555.6	gi|345006823|ref|YP_004809676.1|	-	0.00016	21.3	0.0	0.00029	20.5	0.0	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_16	PF13191.6	gi|345006823|ref|YP_004809676.1|	-	0.0007	20.0	0.1	0.0011	19.4	0.1	1.5	1	1	0	1	1	1	1	AAA	ATPase	domain
RsgA_GTPase	PF03193.16	gi|345006823|ref|YP_004809676.1|	-	0.00097	19.1	0.0	0.0017	18.3	0.0	1.4	1	0	0	1	1	1	1	RsgA	GTPase
AAA_30	PF13604.6	gi|345006823|ref|YP_004809676.1|	-	0.0025	17.6	0.1	0.0053	16.5	0.1	1.7	1	1	0	1	1	1	1	AAA	domain
ABC_ATPase	PF09818.9	gi|345006823|ref|YP_004809676.1|	-	0.0071	15.2	0.4	1.3	7.7	0.3	2.8	2	1	0	2	2	2	1	Predicted	ATPase	of	the	ABC	class
AAA_5	PF07728.14	gi|345006823|ref|YP_004809676.1|	-	0.0075	16.3	0.1	4.8	7.2	0.0	2.3	2	0	0	2	2	2	2	AAA	domain	(dynein-related	subfamily)
ATPase_2	PF01637.18	gi|345006823|ref|YP_004809676.1|	-	0.0095	15.9	0.0	0.075	12.9	0.0	2.1	2	1	0	2	2	2	1	ATPase	domain	predominantly	from	Archaea
AAA_23	PF13476.6	gi|345006823|ref|YP_004809676.1|	-	0.013	16.0	0.0	0.021	15.3	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
NB-ARC	PF00931.22	gi|345006823|ref|YP_004809676.1|	-	0.013	14.7	0.0	2.8	7.0	0.0	2.6	2	1	1	3	3	3	0	NB-ARC	domain
AAA	PF00004.29	gi|345006823|ref|YP_004809676.1|	-	0.026	14.9	0.1	0.43	11.0	0.1	2.2	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_33	PF13671.6	gi|345006823|ref|YP_004809676.1|	-	0.039	14.1	0.2	0.047	13.8	0.2	1.6	1	1	0	1	1	1	0	AAA	domain
SbcCD_C	PF13558.6	gi|345006823|ref|YP_004809676.1|	-	0.051	13.8	0.8	0.92	9.8	0.8	2.2	1	1	0	1	1	1	0	Putative	exonuclease	SbcCD,	C	subunit
Rad17	PF03215.15	gi|345006823|ref|YP_004809676.1|	-	0.056	13.4	0.0	0.12	12.3	0.0	1.3	1	1	0	1	1	1	0	Rad17	P-loop	domain
AAA_15	PF13175.6	gi|345006823|ref|YP_004809676.1|	-	0.068	12.9	0.0	0.12	12.1	0.0	1.4	1	1	0	1	1	1	0	AAA	ATPase	domain
AAA_27	PF13514.6	gi|345006823|ref|YP_004809676.1|	-	0.08	12.5	0.0	0.15	11.7	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
AAA_25	PF13481.6	gi|345006823|ref|YP_004809676.1|	-	0.083	12.5	0.1	0.4	10.2	0.0	2.0	2	0	0	2	2	2	0	AAA	domain
NTPase_1	PF03266.15	gi|345006823|ref|YP_004809676.1|	-	0.091	12.7	0.3	5	7.0	0.0	2.2	2	0	0	2	2	2	0	NTPase
TK	PF00265.18	gi|345006823|ref|YP_004809676.1|	-	0.11	12.3	0.0	13	5.6	0.0	2.2	2	0	0	2	2	2	0	Thymidine	kinase
CobA_CobO_BtuR	PF02572.15	gi|345006823|ref|YP_004809676.1|	-	0.12	12.6	0.2	0.19	12.0	0.2	1.3	1	0	0	1	1	1	0	ATP:corrinoid	adenosyltransferase	BtuR/CobO/CobP
Adeno_IVa2	PF02456.15	gi|345006823|ref|YP_004809676.1|	-	0.2	10.4	0.0	0.79	8.4	0.0	1.8	2	0	0	2	2	2	0	Adenovirus	IVa2	protein
KNTase_C	PF07827.11	gi|345006823|ref|YP_004809676.1|	-	0.21	11.4	0.5	0.73	9.7	0.2	1.8	2	0	0	2	2	2	0	KNTase	C-terminal	domain
BPD_transp_1	PF00528.22	gi|345006824|ref|YP_004809677.1|	-	4.4e-18	65.7	6.4	4.4e-18	65.7	6.4	2.2	1	1	1	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
DUF4229	PF14012.6	gi|345006824|ref|YP_004809677.1|	-	0.016	15.3	0.2	0.016	15.3	0.2	3.4	4	0	0	4	4	4	0	Protein	of	unknown	function	(DUF4229)
Phage_holin_3_6	PF07332.11	gi|345006824|ref|YP_004809677.1|	-	4.5	7.4	16.6	1.3	9.1	8.5	2.3	2	0	0	2	2	2	0	Putative	Actinobacterial	Holin-X,	holin	superfamily	III
SBP_bac_3	PF00497.20	gi|345006825|ref|YP_004809678.1|	-	1.4e-65	220.9	0.5	1.7e-65	220.6	0.5	1.0	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	proteins,	family	3
Lig_chan-Glu_bd	PF10613.9	gi|345006825|ref|YP_004809678.1|	-	1.6e-07	31.5	0.2	3.1e-06	27.3	0.2	2.4	1	1	0	1	1	1	1	Ligated	ion	channel	L-glutamate-	and	glycine-binding	site
TAT_signal	PF10518.9	gi|345006825|ref|YP_004809678.1|	-	7.7e-05	22.4	3.8	7.7e-05	22.4	3.8	2.3	2	0	0	2	2	2	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
NMT1	PF09084.11	gi|345006825|ref|YP_004809678.1|	-	0.00031	20.8	0.0	0.00046	20.2	0.0	1.3	1	0	0	1	1	1	1	NMT1/THI5	like
Phosphonate-bd	PF12974.7	gi|345006825|ref|YP_004809678.1|	-	0.035	13.7	0.1	0.08	12.5	0.1	1.8	1	1	0	1	1	1	0	ABC	transporter,	phosphonate,	periplasmic	substrate-binding	protein
NMT1_3	PF16868.5	gi|345006825|ref|YP_004809678.1|	-	0.054	12.9	0.1	0.11	12.0	0.1	1.5	2	0	0	2	2	2	0	NMT1-like	family
COX15-CtaA	PF02628.15	gi|345006826|ref|YP_004809679.1|	-	3.8e-15	55.8	14.7	9.7e-13	47.9	8.8	3.0	1	1	2	3	3	3	2	Cytochrome	oxidase	assembly	protein
DUF16	PF01519.16	gi|345006829|ref|YP_004809681.1|	-	0.0033	17.9	8.8	0.0033	17.9	8.8	2.5	1	1	1	3	3	3	1	Protein	of	unknown	function	DUF16
YlqD	PF11068.8	gi|345006829|ref|YP_004809681.1|	-	0.029	14.7	5.7	0.029	14.7	5.7	2.3	2	1	0	2	2	2	0	YlqD	protein
SlyX	PF04102.12	gi|345006829|ref|YP_004809681.1|	-	0.043	14.4	8.8	0.12	13.0	6.6	2.4	1	1	1	2	2	2	0	SlyX
GSH_synthase	PF03199.15	gi|345006829|ref|YP_004809681.1|	-	0.084	13.3	0.6	0.2	12.1	0.2	2.0	1	1	1	2	2	2	0	Eukaryotic	glutathione	synthase
DUF1664	PF07889.12	gi|345006829|ref|YP_004809681.1|	-	0.17	11.9	7.9	0.32	11.0	7.9	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1664)
Laminin_II	PF06009.12	gi|345006829|ref|YP_004809681.1|	-	0.23	11.5	6.6	0.072	13.1	3.8	1.6	2	0	0	2	2	2	0	Laminin	Domain	II
MtrG	PF04210.13	gi|345006829|ref|YP_004809681.1|	-	0.25	11.2	1.8	0.82	9.6	0.0	2.4	1	1	1	2	2	2	0	Tetrahydromethanopterin	S-methyltransferase,	subunit	G
ABC_tran_Xtn	PF12848.7	gi|345006829|ref|YP_004809681.1|	-	0.53	10.3	12.4	0.26	11.3	6.6	2.6	2	0	0	2	2	2	0	ABC	transporter
XhlA	PF10779.9	gi|345006829|ref|YP_004809681.1|	-	0.87	9.8	11.9	0.25	11.6	7.3	2.3	1	1	1	2	2	2	0	Haemolysin	XhlA
Med9	PF07544.13	gi|345006829|ref|YP_004809681.1|	-	0.9	9.7	12.2	0.57	10.3	7.9	2.6	2	0	0	2	2	2	0	RNA	polymerase	II	transcription	mediator	complex	subunit	9
Prefoldin	PF02996.17	gi|345006829|ref|YP_004809681.1|	-	1.3	9.0	15.1	4.1	7.3	0.2	2.9	3	0	0	3	3	3	0	Prefoldin	subunit
DHR10	PF18595.1	gi|345006829|ref|YP_004809681.1|	-	2.3	8.3	17.5	0.13	12.3	11.6	1.9	2	0	0	2	2	2	0	Designed	helical	repeat	protein	10	domain
Exonuc_VII_L	PF02601.15	gi|345006829|ref|YP_004809681.1|	-	4.1	6.9	9.6	7.4	6.1	9.6	1.6	1	1	0	1	1	1	0	Exonuclease	VII,	large	subunit
TMPIT	PF07851.13	gi|345006829|ref|YP_004809681.1|	-	7	5.8	9.9	0.54	9.5	4.6	1.7	2	0	0	2	2	2	0	TMPIT-like	protein
DUF2730	PF10805.8	gi|345006830|ref|YP_004809682.1|	-	0.083	13.0	0.1	0.14	12.3	0.1	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2730)
AlbA_2	PF04326.14	gi|345006831|ref|YP_004809683.1|	-	0.0019	18.5	0.0	0.0024	18.2	0.0	1.2	1	0	0	1	1	1	1	Putative	DNA-binding	domain
UPF0236	PF06782.11	gi|345006832|ref|YP_004809684.1|	-	9.7e-06	24.5	0.0	0.00026	19.8	0.0	2.1	2	0	0	2	2	2	2	Uncharacterised	protein	family	(UPF0236)
Transposase_mut	PF00872.18	gi|345006832|ref|YP_004809684.1|	-	0.00037	19.4	0.2	1	8.1	0.0	2.9	2	2	0	2	2	2	2	Transposase,	Mutator	family
Transglut_core3	PF13471.6	gi|345006833|ref|YP_004809685.1|	-	0.034	14.0	0.0	0.066	13.1	0.0	1.5	1	0	0	1	1	1	0	Transglutaminase-like	superfamily
DUF4600	PF15372.6	gi|345006833|ref|YP_004809685.1|	-	0.1	13.0	1.9	2.4	8.6	0.4	2.2	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4600)
DUF746	PF05344.11	gi|345006834|ref|YP_004809686.1|	-	0.093	12.6	0.0	0.13	12.1	0.0	1.2	1	0	0	1	1	1	0	Domain	of	Unknown	Function	(DUF746)
AlbA_2	PF04326.14	gi|345006836|ref|YP_004809688.1|	-	4.4e-16	59.3	0.1	1.4e-15	57.7	0.0	1.8	2	0	0	2	2	2	1	Putative	DNA-binding	domain
TerB	PF05099.13	gi|345006836|ref|YP_004809688.1|	-	0.084	12.8	0.5	0.26	11.2	0.4	1.9	2	0	0	2	2	2	0	Tellurite	resistance	protein	TerB
DUF1447	PF07288.11	gi|345006836|ref|YP_004809688.1|	-	0.085	12.9	0.4	0.085	12.9	0.4	2.2	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1447)
Med2	PF11214.8	gi|345006836|ref|YP_004809688.1|	-	0.12	12.6	5.6	0.25	11.5	0.1	3.0	3	1	0	3	3	3	0	Mediator	complex	subunit	2
DUF4168	PF13767.6	gi|345006836|ref|YP_004809688.1|	-	0.13	13.4	0.4	0.13	13.4	0.4	2.6	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF4168)
zinc_ribbon_9	PF14369.6	gi|345006837|ref|YP_004809689.1|	-	0.048	13.9	0.7	0.11	12.7	0.7	1.7	1	0	0	1	1	1	0	zinc-ribbon
Zn-ribbon_8	PF09723.10	gi|345006837|ref|YP_004809689.1|	-	0.059	13.5	1.7	0.11	12.6	1.7	1.4	1	0	0	1	1	1	0	Zinc	ribbon	domain
HypA	PF01155.19	gi|345006837|ref|YP_004809689.1|	-	0.11	12.6	0.1	0.2	11.7	0.1	1.4	1	0	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
TNRC6-PABC_bdg	PF16608.5	gi|345006837|ref|YP_004809689.1|	-	0.14	11.8	0.1	0.22	11.2	0.1	1.2	1	0	0	1	1	1	0	TNRC6-PABC	binding	domain
DUF262	PF03235.14	gi|345006839|ref|YP_004809691.1|	-	3.5e-25	89.5	0.6	3.5e-25	89.5	0.6	1.7	2	0	0	2	2	2	1	Protein	of	unknown	function	DUF262
DUF1524	PF07510.11	gi|345006839|ref|YP_004809691.1|	-	1.2e-05	25.3	0.1	3.2e-05	23.8	0.1	1.7	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1524)
HNH_4	PF13395.6	gi|345006839|ref|YP_004809691.1|	-	0.012	15.5	0.0	0.032	14.1	0.0	1.7	1	0	0	1	1	1	0	HNH	endonuclease
DUF262	PF03235.14	gi|345006840|ref|YP_004809692.1|	-	7e-29	101.6	1.1	1.2e-28	100.8	0.3	1.9	2	0	0	2	2	2	1	Protein	of	unknown	function	DUF262
AlbA_2	PF04326.14	gi|345006840|ref|YP_004809692.1|	-	1.1e-17	64.5	0.0	2.5e-17	63.3	0.0	1.7	1	0	0	1	1	1	1	Putative	DNA-binding	domain
DUF1524	PF07510.11	gi|345006840|ref|YP_004809692.1|	-	0.0047	16.8	0.0	0.015	15.2	0.0	1.9	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1524)
S1	PF00575.23	gi|345006841|ref|YP_004809693.1|	-	0.16	12.3	0.6	20	5.6	0.0	2.9	2	0	0	2	2	2	0	S1	RNA	binding	domain
DUF499	PF04465.12	gi|345006842|ref|YP_004809694.1|	-	3.1e-37	127.9	0.2	4.3e-30	104.3	0.0	2.8	3	0	0	3	3	3	2	Protein	of	unknown	function	(DUF499)
FliD_C	PF07195.12	gi|345006842|ref|YP_004809694.1|	-	0.028	13.8	0.0	0.081	12.3	0.0	1.7	1	0	0	1	1	1	0	Flagellar	hook-associated	protein	2	C-terminus
AAA	PF00004.29	gi|345006842|ref|YP_004809694.1|	-	0.18	12.2	1.0	1	9.8	0.0	2.6	2	1	1	3	3	3	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
DUF1156	PF06634.12	gi|345006844|ref|YP_004809696.1|	-	3.4e-10	39.9	0.1	7.9e-10	38.7	0.1	1.6	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1156)
UPF0020	PF01170.18	gi|345006844|ref|YP_004809696.1|	-	9.1e-05	22.2	0.1	0.04	13.6	0.0	2.5	2	0	0	2	2	2	2	Putative	RNA	methylase	family	UPF0020
N6_N4_Mtase	PF01555.18	gi|345006844|ref|YP_004809696.1|	-	0.0015	18.3	0.5	0.0037	17.0	0.5	1.9	1	1	0	1	1	1	1	DNA	methylase
OrfB_Zn_ribbon	PF07282.11	gi|345006844|ref|YP_004809696.1|	-	0.25	11.3	0.6	3.3	7.7	0.0	2.5	2	0	0	2	2	2	0	Putative	transposase	DNA-binding	domain
TF_Zn_Ribbon	PF08271.12	gi|345006844|ref|YP_004809696.1|	-	0.91	9.1	2.9	1.1	8.8	0.3	2.4	2	0	0	2	2	2	0	TFIIB	zinc-binding
Helicase_C	PF00271.31	gi|345006845|ref|YP_004809697.1|	-	1.4e-14	54.3	0.0	4.2e-14	52.8	0.0	1.9	1	0	0	1	1	1	1	Helicase	conserved	C-terminal	domain
SNF2_N	PF00176.23	gi|345006845|ref|YP_004809697.1|	-	1.5e-11	43.6	0.0	2.9e-11	42.7	0.0	1.3	1	0	0	1	1	1	1	SNF2	family	N-terminal	domain
PLDc_2	PF13091.6	gi|345006845|ref|YP_004809697.1|	-	2.2e-10	40.5	0.0	2.4e-09	37.2	0.0	2.4	2	0	0	2	2	2	1	PLD-like	domain
ResIII	PF04851.15	gi|345006845|ref|YP_004809697.1|	-	3.8e-06	27.0	0.0	2e-05	24.7	0.0	2.2	2	0	0	2	2	2	1	Type	III	restriction	enzyme,	res	subunit
GerE	PF00196.19	gi|345006846|ref|YP_004809698.1|	-	3.4e-08	32.9	0.4	2.5e-07	30.1	0.2	2.4	2	0	0	2	2	2	1	Bacterial	regulatory	proteins,	luxR	family
Sigma70_r4_2	PF08281.12	gi|345006846|ref|YP_004809698.1|	-	8.1e-06	25.4	2.3	1.9e-05	24.3	0.3	2.5	3	0	0	3	3	3	1	Sigma-70,	region	4
SprT-like	PF10263.9	gi|345006846|ref|YP_004809698.1|	-	2.8e-05	23.9	1.5	4e-05	23.4	0.3	1.9	2	0	0	2	2	2	1	SprT-like	family
HTH_23	PF13384.6	gi|345006846|ref|YP_004809698.1|	-	0.00053	19.7	0.8	0.0045	16.7	0.0	2.6	3	0	0	3	3	3	1	Homeodomain-like	domain
Sigma70_r4	PF04545.16	gi|345006846|ref|YP_004809698.1|	-	0.0028	17.1	2.8	0.078	12.5	0.1	3.0	3	0	0	3	3	3	1	Sigma-70,	region	4
DUF4157	PF13699.6	gi|345006846|ref|YP_004809698.1|	-	0.028	14.7	0.2	0.11	12.7	0.2	2.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4157)
BSP	PF04450.12	gi|345006846|ref|YP_004809698.1|	-	0.029	14.2	0.2	0.052	13.3	0.2	1.5	1	0	0	1	1	1	0	Peptidase	of	plants	and	bacteria
HTH_Tnp_ISL3	PF13542.6	gi|345006846|ref|YP_004809698.1|	-	0.051	13.0	0.3	0.71	9.3	0.0	2.9	3	0	0	3	3	3	0	Helix-turn-helix	domain	of	transposase	family	ISL3
GP3_package	PF16677.5	gi|345006846|ref|YP_004809698.1|	-	0.051	13.7	0.7	0.17	12.1	0.2	2.0	2	0	0	2	2	2	0	DNA-packaging	protein	gp3
HTH_10	PF04967.12	gi|345006846|ref|YP_004809698.1|	-	0.13	12.1	0.3	0.42	10.5	0.1	2.0	2	0	0	2	2	2	0	HTH	DNA	binding	domain
Resolvase	PF00239.21	gi|345006847|ref|YP_004809699.1|	-	2.8e-27	95.6	0.7	4e-27	95.1	0.7	1.2	1	0	0	1	1	1	1	Resolvase,	N	terminal	domain
RNA_Me_trans	PF04252.13	gi|345006847|ref|YP_004809699.1|	-	0.0018	17.9	0.2	0.0041	16.7	0.2	1.6	1	1	0	1	1	1	1	Predicted	SAM-dependent	RNA	methyltransferase
HTH_Crp_2	PF13545.6	gi|345006847|ref|YP_004809699.1|	-	0.01	15.8	0.1	0.19	11.8	0.0	2.5	2	0	0	2	2	2	0	Crp-like	helix-turn-helix	domain
HTH_7	PF02796.15	gi|345006847|ref|YP_004809699.1|	-	0.011	15.8	0.0	0.055	13.6	0.0	2.2	2	0	0	2	2	2	0	Helix-turn-helix	domain	of	resolvase
CENP-P	PF13096.6	gi|345006847|ref|YP_004809699.1|	-	0.1	12.3	0.9	0.71	9.5	0.2	2.0	1	1	1	2	2	2	0	CENP-A-nucleosome	distal	(CAD)	centromere	subunit,	CENP-P
ThiD2	PF17792.1	gi|345006847|ref|YP_004809699.1|	-	0.12	12.9	1.3	0.31	11.5	0.2	2.2	3	0	0	3	3	3	0	ThiD2	family
WYL	PF13280.6	gi|345006848|ref|YP_004809700.1|	-	0.00022	21.3	0.0	0.00066	19.8	0.0	1.7	1	1	0	1	1	1	1	WYL	domain
DUF4411	PF14367.6	gi|345006850|ref|YP_004809702.1|	-	0.011	15.6	1.9	0.079	12.9	0.0	2.7	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF4411)
Phage_integrase	PF00589.22	gi|345006851|ref|YP_004809703.1|	-	3.1e-17	62.9	0.1	1.4e-16	60.8	0.1	1.9	2	0	0	2	2	2	1	Phage	integrase	family
GHL6	PF14871.6	gi|345006851|ref|YP_004809703.1|	-	0.016	15.3	0.2	0.062	13.5	0.0	2.1	3	0	0	3	3	3	0	Hypothetical	glycosyl	hydrolase	6
UPF0236	PF06782.11	gi|345006852|ref|YP_004809704.1|	-	9.7e-06	24.5	0.0	0.00026	19.8	0.0	2.1	2	0	0	2	2	2	2	Uncharacterised	protein	family	(UPF0236)
Transposase_mut	PF00872.18	gi|345006852|ref|YP_004809704.1|	-	0.00037	19.4	0.2	1	8.1	0.0	2.9	2	2	0	2	2	2	2	Transposase,	Mutator	family
DDE_Tnp_1	PF01609.21	gi|345006853|ref|YP_004809705.1|	-	0.031	13.9	0.1	0.085	12.5	0.1	1.7	1	1	0	1	1	1	0	Transposase	DDE	domain
FYRC	PF05965.14	gi|345006854|ref|YP_004809706.1|	-	0.021	15.0	0.0	0.048	13.8	0.0	1.6	1	1	1	2	2	2	0	F/Y	rich	C-terminus
PHD_like	PF12910.7	gi|345006854|ref|YP_004809706.1|	-	0.065	13.3	0.0	0.07	13.1	0.0	1.1	1	0	0	1	1	1	0	Antitoxin	of	toxin-antitoxin,	RelE	/	RelB,	TA	system
DUF1931	PF09123.11	gi|345006855|ref|YP_004809707.1|	-	0.00048	20.2	0.6	0.00051	20.2	0.6	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1931)
CBFD_NFYB_HMF	PF00808.23	gi|345006855|ref|YP_004809707.1|	-	0.0011	19.1	0.0	0.0015	18.8	0.0	1.4	1	1	0	1	1	1	1	Histone-like	transcription	factor	(CBF/NF-Y)	and	archaeal	histone
Glutaredoxin	PF00462.24	gi|345006855|ref|YP_004809707.1|	-	0.063	13.5	0.1	0.082	13.1	0.1	1.2	1	0	0	1	1	1	0	Glutaredoxin
DctP	PF03480.13	gi|345006855|ref|YP_004809707.1|	-	0.14	11.5	0.0	0.16	11.3	0.0	1.0	1	0	0	1	1	1	0	Bacterial	extracellular	solute-binding	protein,	family	7
Exonuc_VII_L	PF02601.15	gi|345006856|ref|YP_004809708.1|	-	4.9e-53	180.7	2.4	6.8e-53	180.2	2.4	1.1	1	0	0	1	1	1	1	Exonuclease	VII,	large	subunit
tRNA_anti_2	PF13742.6	gi|345006856|ref|YP_004809708.1|	-	2.6e-17	62.8	0.0	4.4e-17	62.1	0.0	1.4	1	0	0	1	1	1	1	OB-fold	nucleic	acid	binding	domain
tRNA_anti-codon	PF01336.25	gi|345006856|ref|YP_004809708.1|	-	0.0012	18.8	0.0	0.0022	18.0	0.0	1.4	1	0	0	1	1	1	1	OB-fold	nucleic	acid	binding	domain
Ribosomal_S21	PF01165.20	gi|345006856|ref|YP_004809708.1|	-	0.16	11.7	0.0	0.33	10.7	0.0	1.5	1	0	0	1	1	1	0	Ribosomal	protein	S21
Exonuc_VII_S	PF02609.16	gi|345006857|ref|YP_004809709.1|	-	2e-10	40.5	1.9	2.3e-10	40.4	1.9	1.1	1	0	0	1	1	1	1	Exonuclease	VII	small	subunit
Vps8	PF12816.7	gi|345006857|ref|YP_004809709.1|	-	0.2	11.1	0.2	0.21	11.0	0.2	1.1	1	0	0	1	1	1	0	Golgi	CORVET	complex	core	vacuolar	protein	8
TusA	PF01206.17	gi|345006858|ref|YP_004809710.1|	-	0.036	13.9	0.0	0.053	13.4	0.0	1.3	1	0	0	1	1	1	0	Sulfurtransferase	TusA
Sigma70_r4	PF04545.16	gi|345006858|ref|YP_004809710.1|	-	0.04	13.4	1.5	0.042	13.4	0.2	1.7	2	0	0	2	2	2	0	Sigma-70,	region	4
Sigma70_r4_2	PF08281.12	gi|345006858|ref|YP_004809710.1|	-	0.047	13.4	0.9	0.058	13.1	0.1	1.6	2	0	0	2	2	2	0	Sigma-70,	region	4
Metal_resist	PF13801.6	gi|345006858|ref|YP_004809710.1|	-	0.049	13.8	0.6	0.057	13.6	0.6	1.2	1	0	0	1	1	1	0	Heavy-metal	resistance
IclR	PF01614.18	gi|345006858|ref|YP_004809710.1|	-	0.069	13.0	0.1	0.092	12.6	0.1	1.2	1	0	0	1	1	1	0	Bacterial	transcriptional	regulator
XLF	PF09302.11	gi|345006858|ref|YP_004809710.1|	-	0.11	12.7	0.2	0.12	12.5	0.2	1.1	1	0	0	1	1	1	0	XLF-Cernunnos,	XRcc4-like	factor,	NHEJ	component
HisKA	PF00512.25	gi|345006858|ref|YP_004809710.1|	-	0.12	12.4	0.7	0.18	11.9	0.7	1.3	1	0	0	1	1	1	0	His	Kinase	A	(phospho-acceptor)	domain
DUF5333	PF17267.2	gi|345006858|ref|YP_004809710.1|	-	0.13	12.5	0.1	0.23	11.6	0.1	1.4	1	1	0	1	1	1	0	Family	of	unknown	function	(DUF5333)
TrbC	PF04956.13	gi|345006859|ref|YP_004809711.1|	-	0.2	11.9	2.9	0.33	11.2	1.7	1.8	2	0	0	2	2	2	0	TrbC/VIRB2	family
Meth_synt_2	PF01717.18	gi|345006860|ref|YP_004809712.1|	-	0.045	13.0	0.1	0.075	12.3	0.1	1.2	1	0	0	1	1	1	0	Cobalamin-independent	synthase,	Catalytic	domain
DUF4982	PF16355.5	gi|345006861|ref|YP_004809713.1|	-	0.017	15.0	0.0	0.038	13.9	0.0	1.7	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4982)
TAT_signal	PF10518.9	gi|345006861|ref|YP_004809713.1|	-	0.022	14.6	1.0	0.036	13.9	1.0	1.4	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
DUF3085	PF11284.8	gi|345006861|ref|YP_004809713.1|	-	0.034	14.4	0.0	0.08	13.3	0.0	1.6	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3085)
MG2	PF01835.19	gi|345006861|ref|YP_004809713.1|	-	0.071	13.6	0.3	0.53	10.8	0.0	2.4	2	1	0	2	2	2	0	MG2	domain
LssY_C	PF14067.6	gi|345006862|ref|YP_004809714.1|	-	0.087	12.4	0.0	0.14	11.7	0.0	1.2	1	0	0	1	1	1	0	LssY	C-terminus
AAA_10	PF12846.7	gi|345006864|ref|YP_004809716.1|	-	0.0013	17.7	0.2	0.85	8.5	0.1	2.2	2	0	0	2	2	2	2	AAA-like	domain
CagE_TrbE_VirB	PF03135.14	gi|345006864|ref|YP_004809716.1|	-	0.0047	17.1	0.0	0.0084	16.2	0.0	1.3	1	0	0	1	1	1	1	CagE,	TrbE,	VirB	family,	component	of	type	IV	transporter	system
AAA_22	PF13401.6	gi|345006864|ref|YP_004809716.1|	-	0.0095	16.2	1.6	5	7.4	0.2	3.3	3	1	1	4	4	4	2	AAA	domain
Zot	PF05707.12	gi|345006864|ref|YP_004809716.1|	-	0.085	12.5	0.3	0.49	10.0	0.1	2.1	2	0	0	2	2	2	0	Zonular	occludens	toxin	(Zot)
DUF4184	PF13803.6	gi|345006864|ref|YP_004809716.1|	-	0.1	12.3	0.0	0.17	11.6	0.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4184)
DUF87	PF01935.17	gi|345006865|ref|YP_004809717.1|	-	0.00079	19.6	0.2	0.0065	16.6	0.0	2.7	3	1	0	3	3	3	1	Helicase	HerA,	central	domain
TraG-D_C	PF12696.7	gi|345006865|ref|YP_004809717.1|	-	0.0095	15.9	0.4	0.036	14.1	0.0	2.1	2	0	0	2	2	2	1	TraM	recognition	site	of	TraD	and	TraG
Acetyltransf_18	PF18014.1	gi|345006865|ref|YP_004809717.1|	-	0.16	11.8	0.0	0.35	10.7	0.0	1.5	1	0	0	1	1	1	0	Acetyltransferase	(GNAT)	domain
DNA_primase_S	PF01896.19	gi|345006866|ref|YP_004809718.1|	-	8.9e-05	22.6	0.0	0.046	13.8	0.0	2.3	1	1	1	2	2	2	2	DNA	primase	small	subunit
NKWYS	PF10364.9	gi|345006866|ref|YP_004809718.1|	-	0.14	12.3	0.0	0.23	11.6	0.0	1.2	1	0	0	1	1	1	0	Putative	capsular	polysaccharide	synthesis	protein
TPR_14	PF13428.6	gi|345006867|ref|YP_004809719.1|	-	0.23	12.4	2.5	8.8	7.5	0.1	3.3	2	1	1	3	3	3	0	Tetratricopeptide	repeat
AAA_16	PF13191.6	gi|345006868|ref|YP_004809720.1|	-	1.2e-08	35.6	0.4	1.1e-07	32.4	0.0	2.9	3	0	0	3	3	3	1	AAA	ATPase	domain
AAA_22	PF13401.6	gi|345006868|ref|YP_004809720.1|	-	1.7e-06	28.3	0.0	1.1e-05	25.8	0.0	2.4	2	0	0	2	2	2	1	AAA	domain
DUF2791	PF10923.8	gi|345006868|ref|YP_004809720.1|	-	0.068	12.0	0.0	0.19	10.5	0.0	1.7	2	0	0	2	2	2	0	P-loop	Domain	of	unknown	function	(DUF2791)
Sedlin_N	PF04628.13	gi|345006868|ref|YP_004809720.1|	-	0.073	13.2	0.0	0.45	10.6	0.0	2.3	2	0	0	2	2	2	0	Sedlin,	N-terminal	conserved	region
AAA_35	PF14516.6	gi|345006868|ref|YP_004809720.1|	-	0.087	11.6	0.0	2.4	6.9	0.0	2.3	2	0	0	2	2	2	0	AAA-like	domain
NACHT	PF05729.12	gi|345006868|ref|YP_004809720.1|	-	0.14	12.1	0.0	1.2	9.0	0.0	2.5	2	0	0	2	2	2	0	NACHT	domain
SYCP2_ARLD	PF18581.1	gi|345006868|ref|YP_004809720.1|	-	0.18	11.8	0.1	0.4	10.7	0.1	1.5	1	0	0	1	1	1	0	Synaptonemal	complex	2	armadillo-repeat-like	domain
TF_Zn_Ribbon	PF08271.12	gi|345006872|ref|YP_004809724.1|	-	0.027	14.0	0.7	0.027	14.0	0.7	2.0	2	0	0	2	2	2	0	TFIIB	zinc-binding
PHD	PF00628.29	gi|345006872|ref|YP_004809724.1|	-	1.2	9.1	7.0	2.5	8.1	4.1	2.5	2	1	0	2	2	2	0	PHD-finger
RHH_1	PF01402.21	gi|345006874|ref|YP_004809726.1|	-	0.17	11.9	1.1	0.27	11.2	0.0	1.9	2	0	0	2	2	2	0	Ribbon-helix-helix	protein,	copG	family
PIN_9	PF18477.1	gi|345006875|ref|YP_004809727.1|	-	0.0078	16.5	0.0	0.012	15.9	0.0	1.3	1	0	0	1	1	1	1	PIN	like	domain
Mrr_N	PF14338.6	gi|345006876|ref|YP_004809728.1|	-	0.00049	20.2	0.0	0.00063	19.8	0.0	1.3	1	0	0	1	1	1	1	Mrr	N-terminal	domain
DUF2250	PF10007.9	gi|345006876|ref|YP_004809728.1|	-	0.00078	19.5	0.0	0.0013	18.8	0.0	1.4	1	1	0	1	1	1	1	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
HTH_42	PF06224.12	gi|345006876|ref|YP_004809728.1|	-	0.03	13.9	0.0	0.031	13.8	0.0	1.1	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
HTH_45	PF14947.6	gi|345006876|ref|YP_004809728.1|	-	0.1	12.6	0.1	0.11	12.5	0.1	1.3	1	1	0	1	1	1	0	Winged	helix-turn-helix
YjhX_toxin	PF09857.9	gi|345006876|ref|YP_004809728.1|	-	0.13	12.3	0.0	4.8	7.2	0.0	2.1	1	1	0	1	1	1	0	Putative	toxin	of	bacterial	toxin-antitoxin	pair
DUF4423	PF14394.6	gi|345006876|ref|YP_004809728.1|	-	0.15	11.8	0.0	0.17	11.6	0.0	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4423)
HalOD1	PF18545.1	gi|345006877|ref|YP_004809729.1|	-	1.9e-07	31.2	1.2	2.6e-07	30.8	1.2	1.3	1	0	0	1	1	1	1	Halobacterial	output	domain	1
DUF4318	PF14201.6	gi|345006877|ref|YP_004809729.1|	-	0.11	13.0	0.0	0.17	12.4	0.0	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4318)
HTH_20	PF12840.7	gi|345006878|ref|YP_004809730.1|	-	1.2e-05	25.2	1.1	1.8e-05	24.7	0.3	1.7	2	0	0	2	2	2	1	Helix-turn-helix	domain
TrmB	PF01978.19	gi|345006878|ref|YP_004809730.1|	-	4.3e-05	23.3	0.0	8.2e-05	22.4	0.0	1.4	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
GntR	PF00392.21	gi|345006878|ref|YP_004809730.1|	-	0.0018	17.9	0.1	0.0054	16.3	0.1	1.8	2	0	0	2	2	2	1	Bacterial	regulatory	proteins,	gntR	family
HTH_5	PF01022.20	gi|345006878|ref|YP_004809730.1|	-	0.0084	16.0	0.0	0.014	15.2	0.0	1.4	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
MarR_2	PF12802.7	gi|345006878|ref|YP_004809730.1|	-	0.012	15.5	0.1	0.021	14.7	0.1	1.4	1	0	0	1	1	1	0	MarR	family
HTH_Crp_2	PF13545.6	gi|345006878|ref|YP_004809730.1|	-	0.013	15.5	0.0	0.029	14.3	0.0	1.6	1	0	0	1	1	1	0	Crp-like	helix-turn-helix	domain
HTH_23	PF13384.6	gi|345006878|ref|YP_004809730.1|	-	0.022	14.5	0.0	0.047	13.5	0.0	1.5	1	0	0	1	1	1	0	Homeodomain-like	domain
HTH_11	PF08279.12	gi|345006878|ref|YP_004809730.1|	-	0.043	13.8	0.1	0.082	12.9	0.1	1.4	1	0	0	1	1	1	0	HTH	domain
RP-C	PF03428.13	gi|345006878|ref|YP_004809730.1|	-	0.045	13.4	0.0	0.081	12.6	0.0	1.3	1	0	0	1	1	1	0	Replication	protein	C	N-terminal	domain
Rrf2	PF02082.20	gi|345006878|ref|YP_004809730.1|	-	0.071	13.5	0.0	1.8	9.0	0.0	2.2	2	0	0	2	2	2	0	Transcriptional	regulator
HTH_IclR	PF09339.10	gi|345006878|ref|YP_004809730.1|	-	0.13	12.0	0.2	0.27	11.0	0.2	1.5	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
Trp_repressor	PF01371.19	gi|345006878|ref|YP_004809730.1|	-	0.16	12.2	0.0	1.2	9.3	0.0	2.0	2	0	0	2	2	2	0	Trp	repressor	protein
TAT_signal	PF10518.9	gi|345006879|ref|YP_004809731.1|	-	0.019	14.8	0.8	0.038	13.9	0.8	1.5	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
PEP_mutase	PF13714.6	gi|345006879|ref|YP_004809731.1|	-	0.09	12.2	0.0	0.15	11.4	0.0	1.3	1	0	0	1	1	1	0	Phosphoenolpyruvate	phosphomutase
Rubredoxin_2	PF18073.1	gi|345006879|ref|YP_004809731.1|	-	6.3	6.6	7.7	3.7	7.4	0.9	2.9	3	0	0	3	3	3	0	Rubredoxin	metal	binding	domain
DUF4191	PF13829.6	gi|345006880|ref|YP_004809732.1|	-	0.3	10.4	1.2	0.31	10.3	1.2	1.0	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4191)
BatA	PF07584.11	gi|345006880|ref|YP_004809732.1|	-	9.3	6.7	10.5	1.6	9.2	1.7	2.0	1	1	1	2	2	2	0	Aerotolerance	regulator	N-terminal
DUF2065	PF09838.9	gi|345006881|ref|YP_004809733.1|	-	0.058	13.4	0.4	0.058	13.4	0.4	3.0	3	0	0	3	3	3	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2065)
ABC_tran	PF00005.27	gi|345006882|ref|YP_004809734.1|	-	7.3e-28	97.8	0.0	1.1e-27	97.3	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|345006882|ref|YP_004809734.1|	-	9.9e-17	61.7	2.1	1.4e-13	51.3	0.7	2.1	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_23	PF13476.6	gi|345006882|ref|YP_004809734.1|	-	0.01	16.3	0.1	0.023	15.2	0.1	1.7	1	1	0	1	1	1	0	AAA	domain
AAA_22	PF13401.6	gi|345006882|ref|YP_004809734.1|	-	0.015	15.6	0.3	0.11	12.7	0.2	2.2	1	1	0	1	1	1	0	AAA	domain
SMC_N	PF02463.19	gi|345006882|ref|YP_004809734.1|	-	0.021	14.2	0.0	3.4	7.0	0.0	2.1	2	0	0	2	2	2	0	RecF/RecN/SMC	N	terminal	domain
AAA_30	PF13604.6	gi|345006882|ref|YP_004809734.1|	-	0.027	14.2	0.1	0.054	13.2	0.1	1.5	1	0	0	1	1	1	0	AAA	domain
AAA_24	PF13479.6	gi|345006882|ref|YP_004809734.1|	-	0.032	13.9	0.0	0.28	10.9	0.0	2.1	2	0	0	2	2	2	0	AAA	domain
AAA	PF00004.29	gi|345006882|ref|YP_004809734.1|	-	0.05	14.0	0.2	0.48	10.9	0.2	2.2	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_29	PF13555.6	gi|345006882|ref|YP_004809734.1|	-	0.052	13.3	0.1	0.1	12.4	0.1	1.4	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
AAA_16	PF13191.6	gi|345006882|ref|YP_004809734.1|	-	0.054	13.9	0.0	0.085	13.2	0.0	1.7	1	1	0	1	1	1	0	AAA	ATPase	domain
AAA_14	PF13173.6	gi|345006882|ref|YP_004809734.1|	-	0.074	13.1	0.1	9.5	6.3	0.1	2.3	2	0	0	2	2	2	0	AAA	domain
AAA_27	PF13514.6	gi|345006882|ref|YP_004809734.1|	-	0.08	12.5	0.0	0.14	11.8	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
AAA_15	PF13175.6	gi|345006882|ref|YP_004809734.1|	-	0.14	11.8	0.0	6.3	6.4	0.0	2.1	1	1	0	2	2	2	0	AAA	ATPase	domain
AAA_18	PF13238.6	gi|345006882|ref|YP_004809734.1|	-	0.16	12.5	0.0	1.5	9.3	0.0	2.2	1	1	0	1	1	1	0	AAA	domain
AAA_13	PF13166.6	gi|345006882|ref|YP_004809734.1|	-	0.24	10.0	0.0	0.37	9.4	0.0	1.2	1	0	0	1	1	1	0	AAA	domain
DUF1118	PF06549.12	gi|345006883|ref|YP_004809735.1|	-	0.52	10.7	7.4	2.1	8.7	3.6	2.9	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1118)
Gram_pos_anchor	PF00746.21	gi|345006885|ref|YP_004809737.1|	-	0.94	9.5	4.7	3.9	7.5	0.0	2.8	3	0	0	3	3	3	0	LPXTG	cell	wall	anchor	motif
UPF0175	PF03683.13	gi|345006886|ref|YP_004809738.1|	-	3.3e-11	42.7	0.2	3.9e-11	42.5	0.2	1.1	1	0	0	1	1	1	1	Uncharacterised	protein	family	(UPF0175)
tRNA_anti-codon	PF01336.25	gi|345006889|ref|YP_004809741.1|	-	0.00059	19.8	0.1	0.0012	18.8	0.1	1.5	1	0	0	1	1	1	1	OB-fold	nucleic	acid	binding	domain
DUF3553	PF12073.8	gi|345006889|ref|YP_004809741.1|	-	0.22	11.3	2.2	0.65	9.8	0.7	2.3	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3553)
HNH_repeat	PF18780.1	gi|345006890|ref|YP_004809742.1|	-	0.0007	19.3	2.1	0.001	18.8	0.4	2.0	2	0	0	2	2	2	1	Homing	endonuclease	repeat
HNH_2	PF13391.6	gi|345006890|ref|YP_004809742.1|	-	0.001	19.2	1.8	0.0029	17.7	1.7	1.9	1	1	0	1	1	1	1	HNH	endonuclease
HNH	PF01844.23	gi|345006890|ref|YP_004809742.1|	-	0.0024	18.0	1.9	0.0054	16.9	1.9	1.6	1	0	0	1	1	1	1	HNH	endonuclease
LexA_DNA_bind	PF01726.16	gi|345006890|ref|YP_004809742.1|	-	0.0081	15.9	0.0	1.9	8.4	0.0	2.6	2	0	0	2	2	2	2	LexA	DNA	binding	domain
WRKY	PF03106.15	gi|345006890|ref|YP_004809742.1|	-	0.035	14.3	0.8	0.035	14.3	0.8	1.9	2	0	0	2	2	2	0	WRKY	DNA	-binding	domain
Lipase3_N	PF03893.16	gi|345006890|ref|YP_004809742.1|	-	0.17	11.9	0.6	45	4.2	0.0	3.2	3	0	0	3	3	3	0	Lipase	3	N-terminal	region
HTH_5	PF01022.20	gi|345006892|ref|YP_004809744.1|	-	3.5e-05	23.6	0.0	0.0001	22.1	0.0	1.8	2	0	0	2	2	2	1	Bacterial	regulatory	protein,	arsR	family
HTH_45	PF14947.6	gi|345006892|ref|YP_004809744.1|	-	0.0028	17.6	0.0	0.0047	16.9	0.0	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix
TrmB	PF01978.19	gi|345006892|ref|YP_004809744.1|	-	0.0056	16.5	0.1	0.027	14.3	0.1	2.0	1	1	1	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_IclR	PF09339.10	gi|345006892|ref|YP_004809744.1|	-	0.01	15.6	0.0	0.072	12.9	0.0	2.3	1	1	0	1	1	1	1	IclR	helix-turn-helix	domain
HTH_11	PF08279.12	gi|345006892|ref|YP_004809744.1|	-	0.027	14.4	0.1	0.086	12.8	0.0	1.8	2	0	0	2	2	2	0	HTH	domain
HTH_20	PF12840.7	gi|345006892|ref|YP_004809744.1|	-	0.039	14.0	0.0	0.083	13.0	0.0	1.5	1	0	0	1	1	1	0	Helix-turn-helix	domain
DUF1724	PF08350.10	gi|345006892|ref|YP_004809744.1|	-	0.049	13.8	0.0	0.088	13.0	0.0	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1724)
Phage_pRha	PF09669.10	gi|345006892|ref|YP_004809744.1|	-	0.1	13.2	0.0	0.21	12.2	0.0	1.6	1	0	0	1	1	1	0	Phage	regulatory	protein	Rha	(Phage_pRha)
HTH_Crp_2	PF13545.6	gi|345006892|ref|YP_004809744.1|	-	0.1	12.6	0.0	0.21	11.6	0.0	1.6	1	0	0	1	1	1	0	Crp-like	helix-turn-helix	domain
HTH_24	PF13412.6	gi|345006892|ref|YP_004809744.1|	-	0.14	11.7	0.0	0.38	10.4	0.0	1.8	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
HTH_20	PF12840.7	gi|345006894|ref|YP_004809746.1|	-	3.9e-11	42.9	0.0	6.3e-11	42.2	0.0	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_5	PF01022.20	gi|345006894|ref|YP_004809746.1|	-	3.7e-08	33.1	0.0	7.8e-08	32.1	0.0	1.5	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
MarR_2	PF12802.7	gi|345006894|ref|YP_004809746.1|	-	2.1e-06	27.5	0.0	3.7e-06	26.7	0.0	1.4	1	0	0	1	1	1	1	MarR	family
HTH_24	PF13412.6	gi|345006894|ref|YP_004809746.1|	-	2.3e-06	27.0	0.0	4.3e-06	26.2	0.0	1.5	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
MarR	PF01047.22	gi|345006894|ref|YP_004809746.1|	-	1.1e-05	25.2	0.0	2.6e-05	24.0	0.0	1.6	1	0	0	1	1	1	1	MarR	family
TrmB	PF01978.19	gi|345006894|ref|YP_004809746.1|	-	7.8e-05	22.5	0.0	0.00015	21.6	0.0	1.4	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
COX8	PF02285.15	gi|345006894|ref|YP_004809746.1|	-	0.00094	19.0	2.0	0.24	11.3	0.5	2.4	2	0	0	2	2	2	2	Cytochrome	oxidase	c	subunit	VIII
B-block_TFIIIC	PF04182.12	gi|345006894|ref|YP_004809746.1|	-	0.0015	18.7	0.0	0.0029	17.7	0.0	1.4	1	0	0	1	1	1	1	B-block	binding	subunit	of	TFIIIC
HTH_27	PF13463.6	gi|345006894|ref|YP_004809746.1|	-	0.0059	17.1	0.0	0.012	16.1	0.0	1.4	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
Dimerisation2	PF16864.5	gi|345006894|ref|YP_004809746.1|	-	0.03	14.3	0.0	0.041	13.9	0.0	1.3	1	0	0	1	1	1	0	Dimerisation	domain
CDC37_C	PF08564.10	gi|345006894|ref|YP_004809746.1|	-	0.036	14.2	0.0	0.061	13.4	0.0	1.3	1	0	0	1	1	1	0	Cdc37	C	terminal	domain
FaeA	PF04703.12	gi|345006894|ref|YP_004809746.1|	-	0.036	14.4	0.0	0.066	13.6	0.0	1.3	1	0	0	1	1	1	0	FaeA-like	protein
HTH_11	PF08279.12	gi|345006894|ref|YP_004809746.1|	-	0.051	13.5	0.0	0.094	12.7	0.0	1.4	1	0	0	1	1	1	0	HTH	domain
DUF2250	PF10007.9	gi|345006894|ref|YP_004809746.1|	-	0.067	13.3	0.0	0.11	12.7	0.0	1.2	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
SgrR_N	PF12793.7	gi|345006894|ref|YP_004809746.1|	-	0.072	13.3	0.0	0.11	12.7	0.0	1.4	1	1	0	1	1	1	0	Sugar	transport-related	sRNA	regulator	N-term
DUF2513	PF10711.9	gi|345006894|ref|YP_004809746.1|	-	0.074	13.4	0.0	0.11	12.7	0.0	1.3	1	0	0	1	1	1	0	Hypothetical	protein	(DUF2513)
Rrf2	PF02082.20	gi|345006894|ref|YP_004809746.1|	-	0.1	13.0	0.0	0.23	11.8	0.0	1.5	1	0	0	1	1	1	0	Transcriptional	regulator
HTH_10	PF04967.12	gi|345006894|ref|YP_004809746.1|	-	0.1	12.4	0.0	0.22	11.4	0.0	1.5	1	0	0	1	1	1	0	HTH	DNA	binding	domain
Sigma70_r4_2	PF08281.12	gi|345006894|ref|YP_004809746.1|	-	0.11	12.1	0.0	0.22	11.2	0.0	1.5	1	0	0	1	1	1	0	Sigma-70,	region	4
HTH_Crp_2	PF13545.6	gi|345006894|ref|YP_004809746.1|	-	0.14	12.1	0.0	0.29	11.1	0.0	1.5	1	0	0	1	1	1	0	Crp-like	helix-turn-helix	domain
HTH_7	PF02796.15	gi|345006894|ref|YP_004809746.1|	-	0.18	11.9	0.0	0.4	10.8	0.0	1.5	1	0	0	1	1	1	0	Helix-turn-helix	domain	of	resolvase
DDE_Tnp_IS66	PF03050.14	gi|345006895|ref|YP_004809747.1|	-	7e-49	166.8	0.2	7e-49	166.8	0.2	2.0	2	1	0	2	2	2	1	Transposase	IS66	family
ZapB	PF06005.12	gi|345006895|ref|YP_004809747.1|	-	3e-09	37.2	6.3	9.7e-09	35.6	6.3	1.9	1	0	0	1	1	1	1	Cell	division	protein	ZapB
zf-IS66	PF13005.7	gi|345006895|ref|YP_004809747.1|	-	1.9e-05	25.0	4.3	4.5e-05	23.8	4.3	1.7	1	0	0	1	1	1	1	zinc-finger	binding	domain	of	transposase	IS66
YabA	PF06156.13	gi|345006895|ref|YP_004809747.1|	-	4.3e-05	24.1	4.2	0.00014	22.4	4.2	1.8	1	0	0	1	1	1	1	Initiation	control	protein	YabA
CASP_C	PF08172.12	gi|345006895|ref|YP_004809747.1|	-	0.00024	20.6	1.9	0.00039	19.9	1.9	1.2	1	0	0	1	1	1	1	CASP	C	terminal
JIP_LZII	PF16471.5	gi|345006895|ref|YP_004809747.1|	-	0.00056	20.0	3.4	0.0012	19.0	3.4	1.6	1	0	0	1	1	1	1	JNK-interacting	protein	leucine	zipper	II
bZIP_1	PF00170.21	gi|345006895|ref|YP_004809747.1|	-	0.0018	18.3	7.8	0.004	17.2	7.8	1.6	1	0	0	1	1	1	1	bZIP	transcription	factor
DDE_Tnp_IS240	PF13610.6	gi|345006895|ref|YP_004809747.1|	-	0.003	17.8	0.8	0.013	15.7	0.0	2.3	2	1	0	2	2	2	1	DDE	domain
SlyX	PF04102.12	gi|345006895|ref|YP_004809747.1|	-	0.0054	17.3	5.4	0.014	16.0	5.4	1.7	1	0	0	1	1	1	1	SlyX
NUDE_C	PF04880.13	gi|345006895|ref|YP_004809747.1|	-	0.013	16.0	4.4	0.034	14.6	4.4	1.6	1	0	0	1	1	1	0	NUDE	protein,	C-terminal	conserved	region
CCDC106	PF15794.5	gi|345006895|ref|YP_004809747.1|	-	0.02	14.6	3.6	0.042	13.6	3.6	1.4	1	0	0	1	1	1	0	Coiled-coil	domain-containing	protein	106
Cnn_1N	PF07989.11	gi|345006895|ref|YP_004809747.1|	-	0.026	14.7	6.4	0.056	13.6	6.4	1.5	1	0	0	1	1	1	0	Centrosomin	N-terminal	motif	1
SKA1	PF07160.12	gi|345006895|ref|YP_004809747.1|	-	0.029	14.2	0.9	0.057	13.3	0.9	1.4	1	0	0	1	1	1	0	Spindle	and	kinetochore-associated	protein	1
CENP-H	PF05837.12	gi|345006895|ref|YP_004809747.1|	-	0.03	14.7	3.3	0.072	13.5	3.3	1.6	1	0	0	1	1	1	0	Centromere	protein	H	(CENP-H)
DUF4201	PF13870.6	gi|345006895|ref|YP_004809747.1|	-	0.039	13.7	3.6	0.078	12.7	3.6	1.5	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4201)
RP-C_C	PF11800.8	gi|345006895|ref|YP_004809747.1|	-	0.04	14.0	1.2	0.082	13.0	1.2	1.5	1	0	0	1	1	1	0	Replication	protein	C	C-terminal	region
V_ATPase_I	PF01496.19	gi|345006895|ref|YP_004809747.1|	-	0.049	11.6	2.1	0.07	11.1	2.1	1.1	1	0	0	1	1	1	0	V-type	ATPase	116kDa	subunit	family
HSBP1	PF06825.12	gi|345006895|ref|YP_004809747.1|	-	0.06	13.2	0.3	0.11	12.3	0.3	1.4	1	0	0	1	1	1	0	Heat	shock	factor	binding	protein	1
XhlA	PF10779.9	gi|345006895|ref|YP_004809747.1|	-	0.067	13.4	5.8	0.18	12.0	5.8	1.7	1	0	0	1	1	1	0	Haemolysin	XhlA
FlaC_arch	PF05377.11	gi|345006895|ref|YP_004809747.1|	-	0.072	13.5	3.1	0.17	12.3	3.1	1.6	1	0	0	1	1	1	0	Flagella	accessory	protein	C	(FlaC)
TSC22	PF01166.18	gi|345006895|ref|YP_004809747.1|	-	0.087	13.1	14.9	0.11	12.8	7.5	3.3	2	1	1	3	3	3	0	TSC-22/dip/bun	family
HOOK	PF05622.12	gi|345006895|ref|YP_004809747.1|	-	0.093	10.9	3.9	0.13	10.3	3.9	1.1	1	0	0	1	1	1	0	HOOK	protein
GAS	PF13851.6	gi|345006895|ref|YP_004809747.1|	-	0.12	11.8	6.2	0.21	10.9	6.2	1.3	1	0	0	1	1	1	0	Growth-arrest	specific	micro-tubule	binding
DUF4988	PF16378.5	gi|345006895|ref|YP_004809747.1|	-	0.14	11.8	3.3	0.89	9.2	1.5	2.2	2	0	0	2	2	2	0	Domain	of	unknown	function
HALZ	PF02183.18	gi|345006895|ref|YP_004809747.1|	-	0.2	11.9	7.1	0.26	11.6	6.1	1.8	2	0	0	2	2	1	0	Homeobox	associated	leucine	zipper
EMP24_GP25L	PF01105.24	gi|345006895|ref|YP_004809747.1|	-	0.24	11.3	5.2	4.1	7.3	4.2	2.2	2	0	0	2	2	2	0	emp24/gp25L/p24	family/GOLD
Synaptobrevin	PF00957.21	gi|345006895|ref|YP_004809747.1|	-	0.25	11.1	1.7	0.43	10.4	1.7	1.3	1	0	0	1	1	1	0	Synaptobrevin
Spc24	PF08286.11	gi|345006895|ref|YP_004809747.1|	-	0.27	11.5	3.5	0.57	10.5	3.5	1.5	1	0	0	1	1	1	0	Spc24	subunit	of	Ndc80
DivIC	PF04977.15	gi|345006895|ref|YP_004809747.1|	-	0.31	10.8	8.4	0.77	9.6	8.0	1.9	1	1	0	1	1	1	0	Septum	formation	initiator
SpoVR	PF04293.13	gi|345006895|ref|YP_004809747.1|	-	0.35	9.5	4.7	0.55	8.9	4.7	1.2	1	0	0	1	1	1	0	SpoVR	like	protein
Shugoshin_N	PF07558.11	gi|345006895|ref|YP_004809747.1|	-	0.62	10.0	6.8	0.15	11.9	2.5	2.0	1	1	1	2	2	2	0	Shugoshin	N-terminal	coiled-coil	region
Jnk-SapK_ap_N	PF09744.9	gi|345006895|ref|YP_004809747.1|	-	0.68	10.1	7.3	1.9	8.7	7.3	1.7	1	0	0	1	1	1	0	JNK_SAPK-associated	protein-1
Chibby	PF14645.6	gi|345006895|ref|YP_004809747.1|	-	0.7	10.3	4.1	1.7	9.1	4.1	1.6	1	0	0	1	1	1	0	Chibby	family
APG6_N	PF17675.1	gi|345006895|ref|YP_004809747.1|	-	0.77	10.3	9.2	1.5	9.3	9.2	1.5	1	0	0	1	1	1	0	Apg6	coiled-coil	region
ADIP	PF11559.8	gi|345006895|ref|YP_004809747.1|	-	0.78	9.8	7.1	1.7	8.7	7.1	1.5	1	0	0	1	1	1	0	Afadin-	and	alpha	-actinin-Binding
Prefoldin_2	PF01920.20	gi|345006895|ref|YP_004809747.1|	-	0.92	9.5	8.3	1.8	8.6	8.3	1.4	1	0	0	1	1	1	0	Prefoldin	subunit
bZIP_2	PF07716.15	gi|345006895|ref|YP_004809747.1|	-	1.2	9.3	14.7	8.7	6.5	6.5	2.6	1	1	1	2	2	2	0	Basic	region	leucine	zipper
GIT_CC	PF16559.5	gi|345006895|ref|YP_004809747.1|	-	1.2	9.0	5.9	2.4	8.1	5.9	1.5	1	0	0	1	1	1	0	GIT	coiled-coil	Rho	guanine	nucleotide	exchange	factor
GrpE	PF01025.19	gi|345006895|ref|YP_004809747.1|	-	1.2	8.8	5.5	2.3	7.9	5.5	1.4	1	0	0	1	1	1	0	GrpE
DUF2205	PF10224.9	gi|345006895|ref|YP_004809747.1|	-	1.5	8.9	5.6	3.6	7.7	5.6	1.6	1	0	0	1	1	1	0	Short	coiled-coil	protein
Astro_capsid_p	PF12226.8	gi|345006895|ref|YP_004809747.1|	-	1.5	7.9	4.8	2.3	7.3	4.8	1.2	1	0	0	1	1	1	0	Turkey	astrovirus	capsid	protein
DUF3552	PF12072.8	gi|345006895|ref|YP_004809747.1|	-	2.1	7.7	7.5	3.7	6.9	7.5	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3552)
DUF3450	PF11932.8	gi|345006895|ref|YP_004809747.1|	-	2.3	7.4	8.2	0.46	9.8	3.0	2.3	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF3450)
NRBF2	PF08961.10	gi|345006895|ref|YP_004809747.1|	-	2.4	7.7	14.9	0.031	13.9	7.5	1.6	2	0	0	2	2	1	0	Nuclear	receptor-binding	factor	2,	autophagy	regulator
UPF0242	PF06785.11	gi|345006895|ref|YP_004809747.1|	-	7.3	6.6	7.8	2.4	8.2	5.0	1.6	2	0	0	2	2	1	0	Uncharacterised	protein	family	(UPF0242)	N-terminus
PglZ	PF08665.12	gi|345006896|ref|YP_004809748.1|	-	0.078	13.1	0.0	0.32	11.1	0.0	1.8	2	0	0	2	2	2	0	PglZ	domain
DDE_Tnp_1	PF01609.21	gi|345006897|ref|YP_004809749.1|	-	0.031	13.9	0.1	0.085	12.5	0.1	1.7	1	1	0	1	1	1	0	Transposase	DDE	domain
N6_Mtase	PF02384.16	gi|345006898|ref|YP_004809750.1|	-	7.5e-09	35.3	0.0	0.14	11.3	0.0	3.5	3	0	0	3	3	3	3	N-6	DNA	Methylase
Eco57I	PF07669.11	gi|345006898|ref|YP_004809750.1|	-	1.4e-07	32.0	0.0	5.6e-07	30.0	0.0	2.1	1	0	0	1	1	1	1	Eco57I	restriction-modification	methylase
UPF0020	PF01170.18	gi|345006898|ref|YP_004809750.1|	-	0.013	15.2	0.0	6.7	6.3	0.0	2.8	2	1	1	3	3	3	0	Putative	RNA	methylase	family	UPF0020
OmpH	PF03938.14	gi|345006898|ref|YP_004809750.1|	-	1.1	9.6	5.2	1.9	8.8	0.3	3.2	3	0	0	3	3	3	0	Outer	membrane	protein	(OmpH-like)
Helicase_C	PF00271.31	gi|345006899|ref|YP_004809751.1|	-	1.9e-16	60.4	2.2	1.5e-14	54.2	0.0	3.7	4	1	1	5	5	5	1	Helicase	conserved	C-terminal	domain
PLDc_2	PF13091.6	gi|345006899|ref|YP_004809751.1|	-	2.8e-14	53.1	0.0	2.2e-13	50.2	0.0	2.4	2	0	0	2	2	2	1	PLD-like	domain
SNF2_N	PF00176.23	gi|345006899|ref|YP_004809751.1|	-	4.1e-12	45.5	0.0	1.3e-07	30.7	0.1	2.4	2	0	0	2	2	2	2	SNF2	family	N-terminal	domain
ResIII	PF04851.15	gi|345006899|ref|YP_004809751.1|	-	2.8e-10	40.5	0.0	2e-09	37.7	0.0	2.5	2	1	0	2	2	2	1	Type	III	restriction	enzyme,	res	subunit
DUF2075	PF09848.9	gi|345006899|ref|YP_004809751.1|	-	0.00023	20.5	0.2	0.00098	18.5	0.0	2.1	2	0	0	2	2	2	1	Uncharacterized	conserved	protein	(DUF2075)
SWI2_SNF2	PF18766.1	gi|345006899|ref|YP_004809751.1|	-	0.00055	19.7	0.3	0.0015	18.2	0.3	1.6	1	1	0	1	1	1	1	SWI2/SNF2	ATPase
AAA_22	PF13401.6	gi|345006899|ref|YP_004809751.1|	-	0.15	12.4	0.0	1.1	9.6	0.0	2.5	1	1	1	2	2	2	0	AAA	domain
Glycos_transf_1	PF00534.20	gi|345006899|ref|YP_004809751.1|	-	0.21	11.1	3.2	3.1	7.3	0.2	2.6	2	0	0	2	2	2	0	Glycosyl	transferases	group	1
Osmo_CC	PF08946.10	gi|345006900|ref|YP_004809752.1|	-	0.094	13.0	0.7	0.17	12.1	0.7	1.4	1	0	0	1	1	1	0	Osmosensory	transporter	coiled	coil
Img2	PF05046.14	gi|345006900|ref|YP_004809752.1|	-	0.13	12.6	0.2	0.18	12.1	0.2	1.3	1	1	0	1	1	1	0	Mitochondrial	large	subunit	ribosomal	protein	(Img2)
DZR	PF12773.7	gi|345006901|ref|YP_004809753.1|	-	0.026	14.5	0.1	0.051	13.6	0.1	1.4	1	0	0	1	1	1	0	Double	zinc	ribbon
RNA_POL_M_15KD	PF02150.16	gi|345006903|ref|YP_004809755.1|	-	0.12	12.3	1.5	0.26	11.2	1.5	1.5	1	0	0	1	1	1	0	RNA	polymerases	M/15	Kd	subunit
VWA_2	PF13519.6	gi|345006904|ref|YP_004809756.1|	-	5.1e-07	30.3	0.1	1.1e-06	29.2	0.1	1.5	1	0	0	1	1	1	1	von	Willebrand	factor	type	A	domain
VWA	PF00092.28	gi|345006904|ref|YP_004809756.1|	-	1.9e-06	28.3	0.1	2.6e-06	27.8	0.1	1.4	1	0	0	1	1	1	1	von	Willebrand	factor	type	A	domain
Lactamase_B_2	PF12706.7	gi|345006905|ref|YP_004809757.1|	-	2.1e-08	33.9	2.4	2.1e-08	33.9	2.4	2.2	3	0	0	3	3	3	1	Beta-lactamase	superfamily	domain
Lactamase_B	PF00753.27	gi|345006905|ref|YP_004809757.1|	-	1.4e-06	28.5	8.7	4.6e-06	26.8	8.7	1.9	1	0	0	1	1	1	1	Metallo-beta-lactamase	superfamily
SAPS	PF04499.15	gi|345006905|ref|YP_004809757.1|	-	0.75	8.5	5.1	0.99	8.1	5.1	1.3	1	0	0	1	1	1	0	SIT4	phosphatase-associated	protein
SDA1	PF05285.12	gi|345006905|ref|YP_004809757.1|	-	5.8	6.2	19.0	8.4	5.7	19.0	1.1	1	0	0	1	1	1	0	SDA1
Rrf2	PF02082.20	gi|345006906|ref|YP_004809758.1|	-	0.0012	19.1	0.0	0.0017	18.7	0.0	1.1	1	0	0	1	1	1	1	Transcriptional	regulator
SCNM1_acidic	PF15805.5	gi|345006906|ref|YP_004809758.1|	-	0.0063	16.2	0.1	0.0063	16.2	0.1	1.9	2	0	0	2	2	2	1	Acidic	C-terminal	region	of	sodium	channel	modifier	1	SCNM1
BLACT_WH	PF17778.1	gi|345006906|ref|YP_004809758.1|	-	0.042	13.9	0.0	0.09	12.8	0.0	1.5	1	0	0	1	1	1	0	Beta-lactamase	associated	winged	helix	domain
HTH_Crp_2	PF13545.6	gi|345006906|ref|YP_004809758.1|	-	0.093	12.7	0.0	0.13	12.3	0.0	1.2	1	0	0	1	1	1	0	Crp-like	helix-turn-helix	domain
GntR	PF00392.21	gi|345006906|ref|YP_004809758.1|	-	0.11	12.2	0.0	0.14	11.8	0.0	1.2	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	gntR	family
HTH_5	PF01022.20	gi|345006906|ref|YP_004809758.1|	-	0.16	11.8	0.1	0.28	11.1	0.1	1.2	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
DDE_Tnp_1	PF01609.21	gi|345006907|ref|YP_004809759.1|	-	0.031	13.9	0.1	0.085	12.5	0.1	1.7	1	1	0	1	1	1	0	Transposase	DDE	domain
CoiA	PF06054.11	gi|345006908|ref|YP_004809760.1|	-	1.4e-08	34.3	0.0	1.9e-08	33.9	0.0	1.1	1	0	0	1	1	1	1	Competence	protein	CoiA-like	family
Zn_Tnp_IS1	PF03811.13	gi|345006908|ref|YP_004809760.1|	-	0.068	12.9	0.2	0.15	11.8	0.2	1.5	1	0	0	1	1	1	0	InsA	N-terminal	domain
HSDR_N_2	PF13588.6	gi|345006909|ref|YP_004809761.1|	-	2e-08	34.2	0.0	4.9e-08	33.0	0.0	1.6	1	0	0	1	1	1	1	Type	I	restriction	enzyme	R	protein	N	terminus	(HSDR_N)
HSDR_N	PF04313.14	gi|345006909|ref|YP_004809761.1|	-	6.4e-06	26.2	2.5	7.2e-06	26.1	0.2	2.0	2	0	0	2	2	2	1	Type	I	restriction	enzyme	R	protein	N	terminus	(HSDR_N)
PDDEXK_3	PF13366.6	gi|345006909|ref|YP_004809761.1|	-	0.0062	16.9	0.0	0.012	16.0	0.0	1.5	1	0	0	1	1	1	1	PD-(D/E)XK	nuclease	superfamily
AAA_23	PF13476.6	gi|345006909|ref|YP_004809761.1|	-	0.065	13.7	1.3	0.1	13.1	1.3	1.3	1	0	0	1	1	1	0	AAA	domain
AAA_12	PF13087.6	gi|345006911|ref|YP_004809763.1|	-	3.9e-37	127.8	0.0	7.1e-37	127.0	0.0	1.4	1	0	0	1	1	1	1	AAA	domain
AAA_11	PF13086.6	gi|345006911|ref|YP_004809763.1|	-	2.4e-34	119.3	2.9	3.7e-34	118.7	2.9	1.3	1	0	0	1	1	1	1	AAA	domain
AAA_30	PF13604.6	gi|345006911|ref|YP_004809763.1|	-	1.8e-12	47.4	2.6	7.1e-08	32.4	0.1	2.4	1	1	1	2	2	2	2	AAA	domain
AAA_19	PF13245.6	gi|345006911|ref|YP_004809763.1|	-	9e-10	39.1	1.3	2.5e-08	34.4	1.4	3.1	3	1	0	3	3	2	1	AAA	domain
Viral_helicase1	PF01443.18	gi|345006911|ref|YP_004809763.1|	-	3.3e-07	30.3	0.1	0.62	9.7	0.0	3.6	3	0	0	3	3	3	3	Viral	(Superfamily	1)	RNA	helicase
Helicase_RecD	PF05127.14	gi|345006911|ref|YP_004809763.1|	-	1.3e-06	28.4	0.2	0.021	14.7	0.0	2.4	2	0	0	2	2	2	2	Helicase
MobB	PF03205.14	gi|345006911|ref|YP_004809763.1|	-	0.00042	20.2	0.3	0.0016	18.3	0.1	2.0	2	0	0	2	2	1	1	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
AAA_5	PF07728.14	gi|345006911|ref|YP_004809763.1|	-	0.00094	19.2	0.0	0.002	18.1	0.0	1.5	1	0	0	1	1	1	1	AAA	domain	(dynein-related	subfamily)
UvrD-helicase	PF00580.21	gi|345006911|ref|YP_004809763.1|	-	0.0013	18.3	3.2	0.0027	17.3	2.2	1.7	1	1	1	2	2	2	1	UvrD/REP	helicase	N-terminal	domain
2-oxoacid_dh	PF00198.23	gi|345006911|ref|YP_004809763.1|	-	0.0015	18.1	0.0	0.0026	17.2	0.0	1.3	1	0	0	1	1	1	1	2-oxoacid	dehydrogenases	acyltransferase	(catalytic	domain)
SRP54	PF00448.22	gi|345006911|ref|YP_004809763.1|	-	0.0023	17.6	0.1	0.0079	15.8	0.0	1.9	2	0	0	2	2	2	1	SRP54-type	protein,	GTPase	domain
ResIII	PF04851.15	gi|345006911|ref|YP_004809763.1|	-	0.0024	17.9	0.0	0.012	15.7	0.0	2.1	1	1	0	1	1	1	1	Type	III	restriction	enzyme,	res	subunit
AAA_16	PF13191.6	gi|345006911|ref|YP_004809763.1|	-	0.0029	18.0	0.0	0.0073	16.7	0.0	1.7	1	0	0	1	1	1	1	AAA	ATPase	domain
Spc7	PF08317.11	gi|345006911|ref|YP_004809763.1|	-	0.0034	16.3	7.9	0.0063	15.4	7.9	1.3	1	0	0	1	1	1	1	Spc7	kinetochore	protein
DUF4407	PF14362.6	gi|345006911|ref|YP_004809763.1|	-	0.0035	16.7	3.1	0.0059	16.0	3.1	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4407)
DnaB_C	PF03796.15	gi|345006911|ref|YP_004809763.1|	-	0.0043	16.4	0.2	0.012	14.9	0.2	1.8	1	1	0	1	1	1	1	DnaB-like	helicase	C	terminal	domain
Zeta_toxin	PF06414.12	gi|345006911|ref|YP_004809763.1|	-	0.0056	16.0	0.0	0.012	14.9	0.0	1.5	1	0	0	1	1	1	1	Zeta	toxin
ATPase_2	PF01637.18	gi|345006911|ref|YP_004809763.1|	-	0.0067	16.4	0.0	0.014	15.3	0.0	1.5	1	0	0	1	1	1	1	ATPase	domain	predominantly	from	Archaea
AAA_22	PF13401.6	gi|345006911|ref|YP_004809763.1|	-	0.0091	16.3	0.2	0.049	13.9	0.0	2.3	3	1	0	3	3	1	1	AAA	domain
AAA_25	PF13481.6	gi|345006911|ref|YP_004809763.1|	-	0.011	15.4	0.0	0.025	14.2	0.0	1.6	1	0	0	1	1	1	0	AAA	domain
UPF0242	PF06785.11	gi|345006911|ref|YP_004809763.1|	-	0.011	15.9	6.5	0.017	15.2	6.5	1.3	1	0	0	1	1	1	0	Uncharacterised	protein	family	(UPF0242)	N-terminus
AAA_33	PF13671.6	gi|345006911|ref|YP_004809763.1|	-	0.015	15.5	0.0	0.049	13.8	0.0	1.9	2	0	0	2	2	1	0	AAA	domain
DUF2075	PF09848.9	gi|345006911|ref|YP_004809763.1|	-	0.017	14.4	1.7	0.62	9.2	1.7	2.2	1	1	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2075)
AAA	PF00004.29	gi|345006911|ref|YP_004809763.1|	-	0.018	15.5	0.1	0.072	13.5	0.1	2.1	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
DZR	PF12773.7	gi|345006911|ref|YP_004809763.1|	-	0.019	15.0	1.1	0.039	14.0	1.1	1.4	1	0	0	1	1	1	0	Double	zinc	ribbon
MAD	PF05557.13	gi|345006911|ref|YP_004809763.1|	-	0.021	13.2	5.2	0.03	12.7	5.2	1.1	1	0	0	1	1	1	0	Mitotic	checkpoint	protein
OmpH	PF03938.14	gi|345006911|ref|YP_004809763.1|	-	0.022	15.1	5.5	0.044	14.1	5.5	1.4	1	0	0	1	1	1	0	Outer	membrane	protein	(OmpH-like)
MMR_HSR1	PF01926.23	gi|345006911|ref|YP_004809763.1|	-	0.025	14.7	0.2	20	5.3	0.0	3.2	3	0	0	3	3	3	0	50S	ribosome-binding	GTPase
DivIC	PF04977.15	gi|345006911|ref|YP_004809763.1|	-	0.027	14.3	0.6	0.027	14.3	0.6	2.3	2	0	0	2	2	2	0	Septum	formation	initiator
AAA_18	PF13238.6	gi|345006911|ref|YP_004809763.1|	-	0.038	14.6	0.0	0.13	12.8	0.0	2.0	1	0	0	1	1	1	0	AAA	domain
zinc_ribbon_15	PF17032.5	gi|345006911|ref|YP_004809763.1|	-	0.079	13.7	0.7	0.19	12.5	0.7	1.6	1	0	0	1	1	1	0	zinc-ribbon	family
NTPase_1	PF03266.15	gi|345006911|ref|YP_004809763.1|	-	0.097	12.6	0.0	0.23	11.4	0.0	1.6	1	0	0	1	1	1	0	NTPase
ABC_tran	PF00005.27	gi|345006911|ref|YP_004809763.1|	-	0.1	13.1	0.6	0.39	11.2	0.6	2.1	1	1	0	1	1	1	0	ABC	transporter
cobW	PF02492.19	gi|345006911|ref|YP_004809763.1|	-	0.11	12.1	0.0	0.22	11.1	0.0	1.5	1	0	0	1	1	1	0	CobW/HypB/UreG,	nucleotide-binding	domain
UvrD_C_2	PF13538.6	gi|345006911|ref|YP_004809763.1|	-	0.11	12.4	0.0	0.35	10.7	0.0	1.9	2	0	0	2	2	1	0	UvrD-like	helicase	C-terminal	domain
AAA_17	PF13207.6	gi|345006911|ref|YP_004809763.1|	-	0.15	12.5	1.0	0.53	10.7	0.0	2.4	1	1	0	2	2	2	0	AAA	domain
KTI12	PF08433.10	gi|345006911|ref|YP_004809763.1|	-	0.16	11.4	1.1	0.38	10.2	0.0	2.1	3	0	0	3	3	2	0	Chromatin	associated	protein	KTI12
Lebercilin	PF15619.6	gi|345006911|ref|YP_004809763.1|	-	0.18	11.4	6.6	0.33	10.6	6.6	1.3	1	0	0	1	1	1	0	Ciliary	protein	causing	Leber	congenital	amaurosis	disease
C1_2	PF03107.16	gi|345006911|ref|YP_004809763.1|	-	0.18	12.1	1.8	0.39	11.1	1.8	1.5	1	0	0	1	1	1	0	C1	domain
AAA_23	PF13476.6	gi|345006911|ref|YP_004809763.1|	-	0.29	11.6	3.8	5.6	7.4	4.0	2.2	2	0	0	2	2	2	0	AAA	domain
PRKG1_interact	PF15898.5	gi|345006911|ref|YP_004809763.1|	-	0.3	12.0	5.8	0.92	10.4	5.8	1.8	1	0	0	1	1	1	0	cGMP-dependent	protein	kinase	interacting	domain
zf-HIT	PF04438.16	gi|345006911|ref|YP_004809763.1|	-	0.32	10.9	3.3	0.57	10.1	3.3	1.4	1	0	0	1	1	1	0	HIT	zinc	finger
Cwf_Cwc_15	PF04889.12	gi|345006911|ref|YP_004809763.1|	-	0.43	10.3	6.4	0.58	9.9	5.6	1.6	1	1	0	1	1	1	0	Cwf15/Cwc15	cell	cycle	control	protein
DHR10	PF18595.1	gi|345006911|ref|YP_004809763.1|	-	0.45	10.6	11.3	1.8	8.6	0.9	2.6	1	1	1	2	2	2	0	Designed	helical	repeat	protein	10	domain
zinc_ribbon_2	PF13240.6	gi|345006911|ref|YP_004809763.1|	-	0.48	10.2	3.3	1.1	9.0	3.3	1.7	1	0	0	1	1	1	0	zinc-ribbon	domain
Atg14	PF10186.9	gi|345006911|ref|YP_004809763.1|	-	0.5	9.4	3.7	0.81	8.7	3.7	1.2	1	0	0	1	1	1	0	Vacuolar	sorting	38	and	autophagy-related	subunit	14
ISG65-75	PF11727.8	gi|345006911|ref|YP_004809763.1|	-	0.52	9.5	4.8	0.93	8.7	4.8	1.3	1	0	0	1	1	1	0	Invariant	surface	glycoprotein
HAUS-augmin3	PF14932.6	gi|345006911|ref|YP_004809763.1|	-	0.6	9.7	9.2	0.14	11.7	5.8	1.6	2	0	0	2	2	1	0	HAUS	augmin-like	complex	subunit	3
Zn-ribbon_8	PF09723.10	gi|345006911|ref|YP_004809763.1|	-	1.2	9.4	4.4	2.3	8.4	0.7	2.5	1	1	1	2	2	2	0	Zinc	ribbon	domain
zf-C2H2	PF00096.26	gi|345006911|ref|YP_004809763.1|	-	1.7	9.3	4.0	1.7	9.3	0.1	2.8	3	0	0	3	3	2	0	Zinc	finger,	C2H2	type
TolA_bind_tri	PF16331.5	gi|345006911|ref|YP_004809763.1|	-	1.9	8.6	6.0	1.2	9.2	0.9	2.5	2	0	0	2	2	2	0	TolA	binding	protein	trimerisation
DUF848	PF05852.11	gi|345006911|ref|YP_004809763.1|	-	2.4	8.3	7.2	0.52	10.4	1.9	2.3	1	1	0	2	2	2	0	Gammaherpesvirus	protein	of	unknown	function	(DUF848)
Cnn_1N	PF07989.11	gi|345006911|ref|YP_004809763.1|	-	6.6	7.0	6.2	33	4.7	5.7	2.2	1	1	0	1	1	1	0	Centrosomin	N-terminal	motif	1
CENP-Q	PF13094.6	gi|345006911|ref|YP_004809763.1|	-	7.6	6.7	11.5	1.6e+02	2.4	11.2	2.6	1	1	0	1	1	1	0	CENP-Q,	a	CENPA-CAD	centromere	complex	subunit
DDE_Tnp_IS240	PF13610.6	gi|345006912|ref|YP_004809764.1|	-	1.2e-30	106.6	0.0	1.8e-30	106.0	0.0	1.3	1	0	0	1	1	1	1	DDE	domain
rve_3	PF13683.6	gi|345006912|ref|YP_004809764.1|	-	5.9e-10	38.8	1.7	8.2e-10	38.3	0.6	1.8	2	0	0	2	2	2	1	Integrase	core	domain
DDE_Tnp_IS66	PF03050.14	gi|345006912|ref|YP_004809764.1|	-	0.013	15.0	0.1	0.028	13.9	0.1	1.6	1	1	0	1	1	1	0	Transposase	IS66	family
rve_2	PF13333.6	gi|345006912|ref|YP_004809764.1|	-	0.034	14.3	0.0	0.073	13.3	0.0	1.6	1	0	0	1	1	1	0	Integrase	core	domain
rve	PF00665.26	gi|345006912|ref|YP_004809764.1|	-	0.039	14.1	0.1	0.11	12.7	0.1	2.0	1	1	0	1	1	1	0	Integrase	core	domain
DUF2384	PF09722.10	gi|345006912|ref|YP_004809764.1|	-	0.095	12.8	1.0	3.6	7.7	0.0	2.9	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF2384)
CBS	PF00571.28	gi|345006913|ref|YP_004809765.1|	-	0.00016	22.1	0.0	0.035	14.6	0.0	2.8	2	0	0	2	2	2	2	CBS	domain
NETI	PF14044.6	gi|345006913|ref|YP_004809765.1|	-	0.11	12.3	0.0	0.61	9.9	0.0	2.1	2	0	0	2	2	2	0	NETI	protein
HBS1_N	PF08938.10	gi|345006915|ref|YP_004809767.1|	-	0.019	15.3	0.2	0.021	15.1	0.2	1.1	1	0	0	1	1	1	0	HBS1	N-terminus
Phage_tail_APC	PF16778.5	gi|345006915|ref|YP_004809767.1|	-	0.049	13.5	0.1	0.053	13.4	0.1	1.2	1	0	0	1	1	1	0	Phage	tail	assembly	chaperone	protein
ADP_ribosyl_GH	PF03747.14	gi|345006916|ref|YP_004809768.1|	-	9.3e-70	235.6	5.4	1.1e-69	235.4	5.4	1.1	1	0	0	1	1	1	1	ADP-ribosylglycohydrolase
Gly-zipper_YMGG	PF13441.6	gi|345006916|ref|YP_004809768.1|	-	0.018	14.7	2.3	0.16	11.7	2.3	2.2	2	0	0	2	2	2	0	YMGG-like	Gly-zipper
SurE	PF01975.17	gi|345006916|ref|YP_004809768.1|	-	0.16	11.8	0.1	0.22	11.3	0.1	1.3	1	0	0	1	1	1	0	Survival	protein	SurE
Gly-zipper_OmpA	PF13436.6	gi|345006916|ref|YP_004809768.1|	-	0.61	9.9	5.4	0.17	11.7	1.5	2.0	2	0	0	2	2	2	0	Glycine-zipper	domain
Rick_17kDa_Anti	PF05433.15	gi|345006916|ref|YP_004809768.1|	-	0.79	9.6	7.1	0.17	11.8	2.6	2.2	3	0	0	3	3	3	0	Glycine	zipper	2TM	domain
DDE_Tnp_1	PF01609.21	gi|345006917|ref|YP_004809769.1|	-	0.031	13.9	0.1	0.085	12.5	0.1	1.7	1	1	0	1	1	1	0	Transposase	DDE	domain
DDE_Tnp_1	PF01609.21	gi|345006918|ref|YP_004809770.1|	-	4.1e-15	56.0	3.9	1.2e-14	54.5	3.9	1.7	1	1	0	1	1	1	1	Transposase	DDE	domain
DUF772	PF05598.11	gi|345006918|ref|YP_004809770.1|	-	0.00052	20.0	0.1	0.0015	18.5	0.1	1.8	1	0	0	1	1	1	1	Transposase	domain	(DUF772)
DDE_Tnp_1_2	PF13586.6	gi|345006918|ref|YP_004809770.1|	-	0.049	14.0	0.9	0.098	13.0	0.3	1.8	2	0	0	2	2	2	0	Transposase	DDE	domain
Usp	PF00582.26	gi|345006919|ref|YP_004809771.1|	-	5.3e-31	108.0	0.2	6.1e-31	107.8	0.2	1.1	1	0	0	1	1	1	1	Universal	stress	protein	family
DUF3482	PF11981.8	gi|345006921|ref|YP_004809773.1|	-	0.2	11.0	10.8	0.23	10.8	10.8	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3482)
Bacteriocin_IIc	PF10439.9	gi|345006921|ref|YP_004809773.1|	-	0.43	10.7	13.0	0.56	10.4	13.0	1.2	1	0	0	1	1	1	0	Bacteriocin	class	II	with	double-glycine	leader	peptide
Fusion_gly	PF00523.18	gi|345006921|ref|YP_004809773.1|	-	0.55	8.4	3.2	4.9	5.3	0.3	2.0	2	0	0	2	2	2	0	Fusion	glycoprotein	F0
ATPase_gene1	PF09527.10	gi|345006921|ref|YP_004809773.1|	-	3	8.1	12.7	9.9	6.4	12.8	1.7	1	1	0	1	1	1	0	Putative	F0F1-ATPase	subunit	Ca2+/Mg2+	transporter
Gly-zipper_YMGG	PF13441.6	gi|345006921|ref|YP_004809773.1|	-	4.7	7.0	22.1	18	5.2	22.3	1.7	1	1	0	1	1	1	0	YMGG-like	Gly-zipper
DUF2273	PF10031.9	gi|345006921|ref|YP_004809773.1|	-	6.9	6.8	12.0	10	6.2	12.0	1.2	1	0	0	1	1	1	0	Small	integral	membrane	protein	(DUF2273)
PIN_12	PF16289.5	gi|345006922|ref|YP_004809774.1|	-	0.011	16.2	0.0	4.5	7.7	0.0	2.1	2	0	0	2	2	2	0	PIN	domain
PIN_4	PF13638.6	gi|345006922|ref|YP_004809774.1|	-	0.079	13.2	0.0	0.15	12.3	0.0	1.4	1	1	0	1	1	1	0	PIN	domain
DUF4876	PF16215.5	gi|345006922|ref|YP_004809774.1|	-	0.25	11.3	1.2	0.34	10.9	0.1	1.7	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF4876)
TrmB	PF01978.19	gi|345006923|ref|YP_004809775.1|	-	1.6e-07	31.1	0.0	3.1e-07	30.2	0.0	1.4	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_IclR	PF09339.10	gi|345006923|ref|YP_004809775.1|	-	6.3e-06	25.9	0.0	2.4e-05	24.1	0.0	2.0	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
HTH_11	PF08279.12	gi|345006923|ref|YP_004809775.1|	-	0.0077	16.1	0.0	0.014	15.4	0.0	1.5	1	0	0	1	1	1	1	HTH	domain
HTH_20	PF12840.7	gi|345006923|ref|YP_004809775.1|	-	0.017	15.1	0.8	0.039	14.0	0.2	2.0	2	0	0	2	2	2	0	Helix-turn-helix	domain
MazE_antitoxin	PF04014.18	gi|345006924|ref|YP_004809776.1|	-	0.11	12.5	0.0	0.2	11.6	0.0	1.5	1	1	0	1	1	1	0	Antidote-toxin	recognition	MazE,	bacterial	antitoxin
DUF3268	PF11672.8	gi|345006925|ref|YP_004809777.1|	-	0.064	13.6	1.6	0.16	12.3	0.2	1.9	2	0	0	2	2	2	0	zinc-finger-containing	domain
Ribosomal_L32p	PF01783.23	gi|345006925|ref|YP_004809777.1|	-	0.073	13.3	2.7	0.58	10.5	0.1	2.5	1	1	1	2	2	2	0	Ribosomal	L32p	protein	family
Resolvase	PF00239.21	gi|345006926|ref|YP_004809778.1|	-	4.3e-22	78.8	6.7	6e-22	78.3	6.7	1.1	1	0	0	1	1	1	1	Resolvase,	N	terminal	domain
SseB_C	PF14581.6	gi|345006926|ref|YP_004809778.1|	-	0.081	13.0	0.0	0.13	12.4	0.0	1.4	1	0	0	1	1	1	0	SseB	protein	C-terminal	domain
Trp_repressor	PF01371.19	gi|345006926|ref|YP_004809778.1|	-	0.1	12.8	0.1	3.4	7.9	0.0	2.4	2	0	0	2	2	2	0	Trp	repressor	protein
Polysacc_deac_1	PF01522.21	gi|345006926|ref|YP_004809778.1|	-	0.12	12.3	0.0	0.26	11.2	0.0	1.6	1	1	0	1	1	1	0	Polysaccharide	deacetylase
T2SSF	PF00482.23	gi|345006926|ref|YP_004809778.1|	-	0.15	12.0	0.6	4.4	7.3	0.0	2.4	3	0	0	3	3	3	0	Type	II	secretion	system	(T2SS),	protein	F
OEP	PF02321.18	gi|345006926|ref|YP_004809778.1|	-	0.18	11.6	1.4	4.8	6.9	0.1	2.3	2	0	0	2	2	2	0	Outer	membrane	efflux	protein
AAA_5	PF07728.14	gi|345006929|ref|YP_004809781.1|	-	1e-17	64.4	0.0	2.2e-17	63.4	0.0	1.6	1	0	0	1	1	1	1	AAA	domain	(dynein-related	subfamily)
AAA	PF00004.29	gi|345006929|ref|YP_004809781.1|	-	4.7e-07	30.3	0.0	1.2e-06	29.0	0.0	1.7	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_7	PF12775.7	gi|345006929|ref|YP_004809781.1|	-	3.5e-06	26.7	0.0	0.00054	19.5	0.0	2.3	2	0	0	2	2	2	1	P-loop	containing	dynein	motor	region
AAA_3	PF07726.11	gi|345006929|ref|YP_004809781.1|	-	7.5e-06	25.8	0.0	2.9e-05	23.9	0.0	1.9	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
TsaE	PF02367.17	gi|345006929|ref|YP_004809781.1|	-	5.7e-05	23.1	0.0	0.00016	21.7	0.0	1.7	1	0	0	1	1	1	1	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
AAA_33	PF13671.6	gi|345006929|ref|YP_004809781.1|	-	0.00012	22.2	0.0	0.00019	21.6	0.0	1.5	1	0	0	1	1	1	1	AAA	domain
AAA_22	PF13401.6	gi|345006929|ref|YP_004809781.1|	-	0.00027	21.2	0.0	0.00073	19.8	0.0	1.7	1	1	0	1	1	1	1	AAA	domain
AAA_18	PF13238.6	gi|345006929|ref|YP_004809781.1|	-	0.00031	21.3	0.0	0.00079	20.0	0.0	1.8	1	0	0	1	1	1	1	AAA	domain
ABC_tran	PF00005.27	gi|345006929|ref|YP_004809781.1|	-	0.00047	20.7	0.0	0.0013	19.2	0.0	1.7	1	1	0	1	1	1	1	ABC	transporter
AAA_25	PF13481.6	gi|345006929|ref|YP_004809781.1|	-	0.00049	19.7	0.0	0.0015	18.2	0.0	1.8	1	0	0	1	1	1	1	AAA	domain
AAA_16	PF13191.6	gi|345006929|ref|YP_004809781.1|	-	0.00089	19.7	0.0	0.0054	17.1	0.0	2.3	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_6	PF12774.7	gi|345006929|ref|YP_004809781.1|	-	0.0014	17.7	1.8	0.6	9.0	0.3	2.7	3	0	0	3	3	3	2	Hydrolytic	ATP	binding	site	of	dynein	motor	region
AAA_24	PF13479.6	gi|345006929|ref|YP_004809781.1|	-	0.0015	18.3	2.1	0.0027	17.5	0.5	2.0	2	0	0	2	2	2	1	AAA	domain
RNA_helicase	PF00910.22	gi|345006929|ref|YP_004809781.1|	-	0.0022	18.4	0.0	0.0045	17.4	0.0	1.5	1	0	0	1	1	1	1	RNA	helicase
RuvB_N	PF05496.12	gi|345006929|ref|YP_004809781.1|	-	0.0026	17.5	1.7	0.0071	16.1	0.0	2.3	3	0	0	3	3	3	1	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
NACHT	PF05729.12	gi|345006929|ref|YP_004809781.1|	-	0.0044	17.0	0.2	0.032	14.1	0.1	2.1	2	0	0	2	2	2	1	NACHT	domain
AAA_14	PF13173.6	gi|345006929|ref|YP_004809781.1|	-	0.0048	16.9	0.1	0.024	14.7	0.1	2.3	1	1	0	1	1	1	1	AAA	domain
IPT	PF01745.16	gi|345006929|ref|YP_004809781.1|	-	0.0055	16.1	0.1	0.01	15.2	0.1	1.4	1	0	0	1	1	1	1	Isopentenyl	transferase
Sigma54_activat	PF00158.26	gi|345006929|ref|YP_004809781.1|	-	0.0091	15.7	0.0	0.032	14.0	0.0	1.9	2	0	0	2	2	2	1	Sigma-54	interaction	domain
AAA_30	PF13604.6	gi|345006929|ref|YP_004809781.1|	-	0.0095	15.7	0.0	0.02	14.6	0.0	1.5	1	0	0	1	1	1	1	AAA	domain
ATPase_2	PF01637.18	gi|345006929|ref|YP_004809781.1|	-	0.011	15.6	0.2	0.033	14.1	0.0	1.8	2	0	0	2	2	2	0	ATPase	domain	predominantly	from	Archaea
AAA_28	PF13521.6	gi|345006929|ref|YP_004809781.1|	-	0.012	15.9	0.2	0.012	15.9	0.2	2.1	2	0	0	2	2	2	0	AAA	domain
Mg_chelatase	PF01078.21	gi|345006929|ref|YP_004809781.1|	-	0.017	14.5	0.0	0.049	13.0	0.0	1.6	2	0	0	2	2	2	0	Magnesium	chelatase,	subunit	ChlI
IstB_IS21	PF01695.17	gi|345006929|ref|YP_004809781.1|	-	0.045	13.5	0.1	0.13	12.0	0.1	1.7	2	0	0	2	2	1	0	IstB-like	ATP	binding	protein
Kinesin	PF00225.23	gi|345006929|ref|YP_004809781.1|	-	0.052	12.5	0.0	6.6	5.6	0.0	2.3	2	0	0	2	2	2	0	Kinesin	motor	domain
Cytidylate_kin	PF02224.18	gi|345006929|ref|YP_004809781.1|	-	0.061	13.0	0.4	0.12	12.1	0.0	1.7	2	0	0	2	2	1	0	Cytidylate	kinase
T2SSE	PF00437.20	gi|345006929|ref|YP_004809781.1|	-	0.078	12.0	0.0	0.13	11.3	0.0	1.3	1	0	0	1	1	1	0	Type	II/IV	secretion	system	protein
Rad17	PF03215.15	gi|345006929|ref|YP_004809781.1|	-	0.13	12.1	0.0	0.27	11.1	0.0	1.4	1	0	0	1	1	1	0	Rad17	P-loop	domain
PhoH	PF02562.16	gi|345006929|ref|YP_004809781.1|	-	0.14	11.6	0.0	0.36	10.3	0.0	1.6	1	0	0	1	1	1	0	PhoH-like	protein
Sigma54_activ_2	PF14532.6	gi|345006929|ref|YP_004809781.1|	-	0.15	12.2	0.0	0.27	11.3	0.0	1.3	1	0	0	1	1	1	0	Sigma-54	interaction	domain
AAA_23	PF13476.6	gi|345006929|ref|YP_004809781.1|	-	0.16	12.4	0.2	0.91	10.0	0.0	2.1	2	0	0	2	2	2	0	AAA	domain
McrBC	PF10117.9	gi|345006930|ref|YP_004809782.1|	-	6.2e-09	35.4	0.0	4.2e-08	32.7	0.0	1.9	1	1	0	1	1	1	1	McrBC	5-methylcytosine	restriction	system	component
TrmB	PF01978.19	gi|345006934|ref|YP_004809786.1|	-	0.0016	18.3	0.0	0.068	13.1	0.0	2.3	2	0	0	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
FAD_binding_2	PF00890.24	gi|345006934|ref|YP_004809786.1|	-	0.06	12.4	0.1	0.065	12.3	0.1	1.1	1	0	0	1	1	1	0	FAD	binding	domain
FaeA	PF04703.12	gi|345006934|ref|YP_004809786.1|	-	0.13	12.6	0.0	0.32	11.4	0.0	1.6	1	0	0	1	1	1	0	FaeA-like	protein
NPC1_N	PF16414.5	gi|345006934|ref|YP_004809786.1|	-	0.17	11.5	0.0	0.2	11.2	0.0	1.2	1	0	0	1	1	1	0	Niemann-Pick	C1	N	terminus
DUF1156	PF06634.12	gi|345006936|ref|YP_004809788.1|	-	7.3e-09	35.6	0.0	1.7e-08	34.4	0.0	1.6	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1156)
UPF0020	PF01170.18	gi|345006936|ref|YP_004809788.1|	-	1.9e-07	31.0	0.0	0.028	14.1	0.0	2.5	2	0	0	2	2	2	2	Putative	RNA	methylase	family	UPF0020
MethyltransfD12	PF02086.15	gi|345006936|ref|YP_004809788.1|	-	7.9e-05	22.5	0.2	0.00025	20.8	0.0	1.9	2	0	0	2	2	2	1	D12	class	N6	adenine-specific	DNA	methyltransferase
N6_N4_Mtase	PF01555.18	gi|345006936|ref|YP_004809788.1|	-	0.0002	21.1	0.0	0.032	14.0	0.0	2.3	2	0	0	2	2	2	1	DNA	methylase
Methyltransf_25	PF13649.6	gi|345006936|ref|YP_004809788.1|	-	0.00055	20.6	0.0	4.2	8.1	0.0	3.6	3	0	0	3	3	3	2	Methyltransferase	domain
Cons_hypoth95	PF03602.15	gi|345006936|ref|YP_004809788.1|	-	0.015	14.9	0.0	6	6.5	0.0	2.3	2	0	0	2	2	2	0	Conserved	hypothetical	protein	95
DZR	PF12773.7	gi|345006936|ref|YP_004809788.1|	-	0.016	15.2	9.7	0.64	10.1	2.9	3.0	1	1	1	2	2	2	0	Double	zinc	ribbon
Methyltransf_11	PF08241.12	gi|345006936|ref|YP_004809788.1|	-	0.036	14.7	0.0	14	6.4	0.0	3.4	3	0	0	3	3	3	0	Methyltransferase	domain
DUF1488	PF07369.11	gi|345006936|ref|YP_004809788.1|	-	0.15	12.1	0.1	0.47	10.5	0.0	1.8	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1488)
UPF0515	PF15135.6	gi|345006936|ref|YP_004809788.1|	-	0.28	10.5	2.8	0.53	9.6	2.8	1.4	1	0	0	1	1	1	0	Uncharacterised	protein	UPF0515
TF_Zn_Ribbon	PF08271.12	gi|345006936|ref|YP_004809788.1|	-	1.3	8.6	14.0	2.6	7.6	4.5	3.4	2	1	0	2	2	2	0	TFIIB	zinc-binding
HypA	PF01155.19	gi|345006936|ref|YP_004809788.1|	-	3.2	7.8	11.6	3.9	7.5	3.2	3.0	1	1	2	3	3	3	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
Methyltransf_4	PF02390.17	gi|345006937|ref|YP_004809789.1|	-	0.087	12.3	0.0	0.11	11.9	0.0	1.2	1	0	0	1	1	1	0	Putative	methyltransferase
hNIFK_binding	PF12196.8	gi|345006938|ref|YP_004809790.1|	-	0.031	13.8	0.3	0.059	12.9	0.3	1.5	1	0	0	1	1	1	0	FHA	Ki67	binding	domain	of	hNIFK
DUF499	PF04465.12	gi|345006939|ref|YP_004809791.1|	-	1.1e-10	40.0	0.7	6.9e-06	24.1	0.1	2.5	2	1	0	2	2	2	2	Protein	of	unknown	function	(DUF499)
ECH_2	PF16113.5	gi|345006939|ref|YP_004809791.1|	-	0.067	12.7	0.0	0.13	11.7	0.0	1.4	1	0	0	1	1	1	0	Enoyl-CoA	hydratase/isomerase
SdpI	PF13630.6	gi|345006940|ref|YP_004809792.1|	-	0.02	15.0	0.9	0.034	14.3	0.9	1.3	1	0	0	1	1	1	0	SdpI/YhfL	protein	family
SNF2_N	PF00176.23	gi|345006941|ref|YP_004809793.1|	-	4.9e-35	120.9	0.1	1.1e-34	119.8	0.1	1.5	1	0	0	1	1	1	1	SNF2	family	N-terminal	domain
Helicase_C	PF00271.31	gi|345006941|ref|YP_004809793.1|	-	2.1e-19	69.9	0.0	7.2e-19	68.2	0.0	2.0	1	0	0	1	1	1	1	Helicase	conserved	C-terminal	domain
ResIII	PF04851.15	gi|345006941|ref|YP_004809793.1|	-	1.6e-09	38.0	0.1	6.6e-09	36.0	0.0	2.0	2	0	0	2	2	2	1	Type	III	restriction	enzyme,	res	subunit
DSS1_SEM1	PF05160.13	gi|345006941|ref|YP_004809793.1|	-	0.0029	17.6	0.7	0.013	15.6	0.7	2.1	1	0	0	1	1	1	1	DSS1/SEM1	family
DUF5343	PF17278.2	gi|345006941|ref|YP_004809793.1|	-	0.1	12.7	0.0	0.32	11.1	0.0	1.8	1	0	0	1	1	1	0	Family	of	unknown	function	(DUF5343)
KfrA_N	PF11740.8	gi|345006942|ref|YP_004809794.1|	-	0.00088	19.9	6.9	0.00088	19.9	6.9	2.6	2	1	0	2	2	2	1	Plasmid	replication	region	DNA-binding	N-term
DUF3584	PF12128.8	gi|345006942|ref|YP_004809794.1|	-	0.03	11.8	16.7	0.04	11.5	16.7	1.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3584)
MCM_N	PF14551.6	gi|345006942|ref|YP_004809794.1|	-	0.04	14.5	1.2	0.47	11.1	0.7	2.4	2	0	0	2	2	2	0	MCM	N-terminal	domain
Exonuc_VII_L	PF02601.15	gi|345006942|ref|YP_004809794.1|	-	0.047	13.2	7.9	0.062	12.9	7.9	1.2	1	0	0	1	1	1	0	Exonuclease	VII,	large	subunit
Prominin	PF05478.11	gi|345006942|ref|YP_004809794.1|	-	0.21	9.5	4.3	0.26	9.2	4.3	1.1	1	0	0	1	1	1	0	Prominin
DUF4407	PF14362.6	gi|345006942|ref|YP_004809794.1|	-	0.23	10.8	17.2	0.59	9.4	17.3	1.5	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4407)
Herpes_UL6	PF01763.16	gi|345006942|ref|YP_004809794.1|	-	0.27	9.7	5.6	0.38	9.2	5.6	1.1	1	0	0	1	1	1	0	Herpesvirus	UL6	like
PilJ	PF13675.6	gi|345006942|ref|YP_004809794.1|	-	0.46	10.5	8.9	0.22	11.5	4.3	2.3	1	1	1	2	2	2	0	Type	IV	pili	methyl-accepting	chemotaxis	transducer	N-term
KELK	PF15796.5	gi|345006942|ref|YP_004809794.1|	-	0.69	10.4	15.8	0.56	10.7	12.9	2.3	1	1	1	2	2	2	0	KELK-motif	containing	domain	of	MRCK	Ser/Thr	protein	kinase
Cob_adeno_trans	PF01923.18	gi|345006942|ref|YP_004809794.1|	-	0.81	9.8	4.8	0.68	10.1	2.6	1.8	1	1	0	1	1	1	0	Cobalamin	adenosyltransferase
DUF4200	PF13863.6	gi|345006942|ref|YP_004809794.1|	-	0.9	10.0	18.2	2.1	8.8	18.2	1.7	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4200)
FapA	PF03961.13	gi|345006942|ref|YP_004809794.1|	-	0.97	8.0	11.1	2	6.9	11.1	1.5	1	1	0	1	1	1	0	Flagellar	Assembly	Protein	A
DUF465	PF04325.13	gi|345006942|ref|YP_004809794.1|	-	1.2	9.2	10.6	0.62	10.2	1.8	3.1	1	1	2	3	3	3	0	Protein	of	unknown	function	(DUF465)
Cnn_1N	PF07989.11	gi|345006942|ref|YP_004809794.1|	-	1.8	8.7	12.0	0.96	9.7	9.0	2.2	2	0	0	2	2	2	0	Centrosomin	N-terminal	motif	1
UPF0242	PF06785.11	gi|345006942|ref|YP_004809794.1|	-	2.5	8.2	14.0	4.5	7.3	14.0	1.4	1	0	0	1	1	1	0	Uncharacterised	protein	family	(UPF0242)	N-terminus
DUF16	PF01519.16	gi|345006942|ref|YP_004809794.1|	-	2.7	8.5	9.7	7.6	7.1	9.7	1.9	1	1	0	1	1	1	0	Protein	of	unknown	function	DUF16
Peptidase_S64	PF08192.11	gi|345006942|ref|YP_004809794.1|	-	4	5.8	9.0	5.1	5.4	9.0	1.1	1	0	0	1	1	1	0	Peptidase	family	S64
Aida_N	PF08910.10	gi|345006942|ref|YP_004809794.1|	-	5.5	7.4	7.0	1.4	9.3	0.3	2.7	2	1	1	3	3	2	0	Aida	N-terminus
V_ATPase_I	PF01496.19	gi|345006942|ref|YP_004809794.1|	-	6.3	4.6	6.8	8	4.2	6.8	1.1	1	0	0	1	1	1	0	V-type	ATPase	116kDa	subunit	family
Muted	PF14942.6	gi|345006942|ref|YP_004809794.1|	-	6.4	7.1	18.7	8.8	6.7	14.0	2.3	1	1	2	3	3	3	0	Organelle	biogenesis,	Muted-like	protein
LPP	PF04728.13	gi|345006942|ref|YP_004809794.1|	-	6.5	7.2	10.9	2.8	8.4	0.3	2.7	3	0	0	3	3	2	0	Lipoprotein	leucine-zipper
FemAB	PF02388.16	gi|345006942|ref|YP_004809794.1|	-	7.4	5.3	8.3	8.1	5.2	7.0	1.6	1	1	0	1	1	1	0	FemAB	family
OmpH	PF03938.14	gi|345006942|ref|YP_004809794.1|	-	8	6.8	22.8	2	8.7	8.9	2.3	1	1	1	2	2	2	0	Outer	membrane	protein	(OmpH-like)
Phage_integrase	PF00589.22	gi|345006945|ref|YP_004809797.1|	-	2.4e-10	40.5	0.0	6.3e-10	39.1	0.0	1.7	2	0	0	2	2	2	1	Phage	integrase	family
Phage_int_SAM_1	PF02899.17	gi|345006945|ref|YP_004809797.1|	-	1.7e-05	25.0	6.0	0.0012	19.1	1.1	2.6	2	1	1	3	3	3	2	Phage	integrase,	N-terminal	SAM-like	domain
Phage_int_SAM_4	PF13495.6	gi|345006945|ref|YP_004809797.1|	-	0.00092	19.6	0.1	0.0024	18.3	0.1	1.8	1	0	0	1	1	1	1	Phage	integrase,	N-terminal	SAM-like	domain
Phage_int_SAM_5	PF13102.6	gi|345006945|ref|YP_004809797.1|	-	0.01	16.1	0.1	0.036	14.4	0.0	1.8	2	0	0	2	2	2	0	Phage	integrase	SAM-like	domain
DDE_Tnp_1	PF01609.21	gi|345006946|ref|YP_004809798.1|	-	0.031	13.9	0.1	0.085	12.5	0.1	1.7	1	1	0	1	1	1	0	Transposase	DDE	domain
ATPase_2	PF01637.18	gi|345006948|ref|YP_004809800.1|	-	5.4e-22	78.9	0.0	4.1e-21	76.0	0.0	2.2	1	1	0	1	1	1	1	ATPase	domain	predominantly	from	Archaea
DUF234	PF03008.14	gi|345006948|ref|YP_004809800.1|	-	2.8e-20	72.6	0.0	5.5e-20	71.7	0.0	1.5	1	0	0	1	1	1	1	Archaea	bacterial	proteins	of	unknown	function
AAA_14	PF13173.6	gi|345006948|ref|YP_004809800.1|	-	3.7e-08	33.5	0.0	2e-07	31.1	0.0	2.0	2	0	0	2	2	2	1	AAA	domain
AAA_16	PF13191.6	gi|345006948|ref|YP_004809800.1|	-	3.3e-05	24.3	0.1	0.00012	22.5	0.0	2.1	2	1	0	2	2	2	1	AAA	ATPase	domain
MarR_2	PF12802.7	gi|345006948|ref|YP_004809800.1|	-	0.00069	19.5	0.2	0.016	15.1	0.0	2.7	3	0	0	3	3	3	1	MarR	family
HTH_24	PF13412.6	gi|345006948|ref|YP_004809800.1|	-	0.003	17.1	0.1	0.0054	16.3	0.1	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
AAA_22	PF13401.6	gi|345006948|ref|YP_004809800.1|	-	0.015	15.6	0.0	0.042	14.1	0.0	1.7	1	0	0	1	1	1	0	AAA	domain
TrmB	PF01978.19	gi|345006948|ref|YP_004809800.1|	-	0.021	14.7	0.0	0.057	13.3	0.0	1.7	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
B-block_TFIIIC	PF04182.12	gi|345006948|ref|YP_004809800.1|	-	0.036	14.2	0.0	0.08	13.1	0.0	1.6	1	0	0	1	1	1	0	B-block	binding	subunit	of	TFIIIC
FaeA	PF04703.12	gi|345006948|ref|YP_004809800.1|	-	0.038	14.4	0.1	0.074	13.4	0.1	1.4	1	0	0	1	1	1	0	FaeA-like	protein
HTH_27	PF13463.6	gi|345006948|ref|YP_004809800.1|	-	0.11	13.0	0.2	0.74	10.4	0.0	2.4	3	0	0	3	3	3	0	Winged	helix	DNA-binding	domain
HTH_5	PF01022.20	gi|345006948|ref|YP_004809800.1|	-	0.12	12.2	0.0	0.2	11.5	0.0	1.4	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
CPBP	PF02517.16	gi|345006949|ref|YP_004809801.1|	-	1e-08	35.4	12.0	4.7e-08	33.3	12.0	2.2	1	1	0	1	1	1	1	CPBP	intramembrane	metalloprotease
PHO4	PF01384.20	gi|345006949|ref|YP_004809801.1|	-	0.15	11.0	10.4	0.15	11.0	9.0	1.7	1	1	0	1	1	1	0	Phosphate	transporter	family
DUF4052	PF13261.6	gi|345006949|ref|YP_004809801.1|	-	0.46	10.3	3.9	0.76	9.6	0.8	2.4	2	1	1	3	3	3	0	Protein	of	unknown	function	(DUF4052)
ABC_tran	PF00005.27	gi|345006951|ref|YP_004809803.1|	-	1.9e-29	102.9	0.0	2.6e-29	102.5	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|345006951|ref|YP_004809803.1|	-	9e-13	48.7	0.2	8.1e-09	35.7	0.1	2.1	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_15	PF13175.6	gi|345006951|ref|YP_004809803.1|	-	0.0096	15.7	0.0	4	7.1	0.0	2.1	2	0	0	2	2	2	2	AAA	ATPase	domain
AAA_13	PF13166.6	gi|345006951|ref|YP_004809803.1|	-	0.028	13.1	0.1	2	6.9	0.0	2.1	2	0	0	2	2	2	0	AAA	domain
AAA_23	PF13476.6	gi|345006951|ref|YP_004809803.1|	-	0.039	14.5	0.1	0.077	13.5	0.1	1.4	1	0	0	1	1	1	0	AAA	domain
AAA_30	PF13604.6	gi|345006951|ref|YP_004809803.1|	-	0.051	13.3	0.5	0.092	12.5	0.1	1.6	2	0	0	2	2	2	0	AAA	domain
AAA_22	PF13401.6	gi|345006951|ref|YP_004809803.1|	-	0.073	13.3	0.1	0.32	11.3	0.1	2.2	1	1	0	1	1	1	0	AAA	domain
AAA_16	PF13191.6	gi|345006951|ref|YP_004809803.1|	-	0.095	13.1	0.0	0.19	12.1	0.0	1.6	1	1	0	1	1	1	0	AAA	ATPase	domain
AAA	PF00004.29	gi|345006951|ref|YP_004809803.1|	-	0.097	13.1	0.1	0.46	10.9	0.1	2.1	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
SRP54	PF00448.22	gi|345006951|ref|YP_004809803.1|	-	0.24	11.0	0.7	0.5	10.0	0.7	1.5	1	0	0	1	1	1	0	SRP54-type	protein,	GTPase	domain
DUF3887	PF13026.6	gi|345006953|ref|YP_004809805.1|	-	8.4e-17	61.8	1.9	1.6e-16	60.9	1.9	1.5	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3887)
Hydrolase_4	PF12146.8	gi|345006953|ref|YP_004809805.1|	-	2.8e-13	49.7	0.0	7.3e-13	48.3	0.0	1.7	1	1	0	1	1	1	1	Serine	aminopeptidase,	S33
Abhydrolase_6	PF12697.7	gi|345006953|ref|YP_004809805.1|	-	1.2e-08	35.8	0.0	2.4e-08	34.9	0.0	1.6	1	1	0	1	1	1	1	Alpha/beta	hydrolase	family
Abhydrolase_5	PF12695.7	gi|345006953|ref|YP_004809805.1|	-	3.7e-07	30.1	0.0	9e-07	28.8	0.0	1.6	1	0	0	1	1	1	1	Alpha/beta	hydrolase	family
DLH	PF01738.18	gi|345006953|ref|YP_004809805.1|	-	7.5e-05	22.4	0.0	0.43	10.1	0.0	2.6	2	1	0	2	2	2	2	Dienelactone	hydrolase	family
Abhydrolase_1	PF00561.20	gi|345006953|ref|YP_004809805.1|	-	0.0001	22.1	0.0	0.00018	21.2	0.0	1.4	1	0	0	1	1	1	1	alpha/beta	hydrolase	fold
Abhydrolase_3	PF07859.13	gi|345006953|ref|YP_004809805.1|	-	0.00022	21.1	0.0	0.00049	20.0	0.0	1.5	1	0	0	1	1	1	1	alpha/beta	hydrolase	fold
PGAP1	PF07819.13	gi|345006953|ref|YP_004809805.1|	-	0.015	15.0	0.0	0.03	14.0	0.0	1.5	1	0	0	1	1	1	0	PGAP1-like	protein
DUF4918	PF16265.5	gi|345006953|ref|YP_004809805.1|	-	0.029	13.9	0.0	0.046	13.2	0.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4918)
DUF3558	PF12079.8	gi|345006953|ref|YP_004809805.1|	-	0.06	13.4	2.9	0.12	12.4	2.9	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3558)
TAT_signal	PF10518.9	gi|345006953|ref|YP_004809805.1|	-	0.084	12.7	3.1	0.16	11.9	3.1	1.5	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
DUF4235	PF14019.6	gi|345006954|ref|YP_004809806.1|	-	0.017	15.2	0.7	3.5	7.8	0.3	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF4235)
RseC_MucC	PF04246.12	gi|345006954|ref|YP_004809806.1|	-	0.099	12.6	0.1	0.11	12.4	0.1	1.0	1	0	0	1	1	1	0	Positive	regulator	of	sigma(E),	RseC/MucC
Gly-zipper_Omp	PF13488.6	gi|345006954|ref|YP_004809806.1|	-	0.11	12.6	8.6	0.15	12.1	8.6	1.2	1	0	0	1	1	1	0	Glycine	zipper
DUF441	PF04284.13	gi|345006954|ref|YP_004809806.1|	-	0.41	10.6	6.9	1.1	9.2	6.9	1.6	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF441)
Syndecan	PF01034.20	gi|345006954|ref|YP_004809806.1|	-	1.3	9.0	4.6	4.5	7.3	0.3	2.1	2	0	0	2	2	2	0	Syndecan	domain
FHIPEP	PF00771.20	gi|345006954|ref|YP_004809806.1|	-	2	6.7	6.2	2.3	6.6	6.2	1.0	1	0	0	1	1	1	0	FHIPEP	family
Romo1	PF10247.9	gi|345006954|ref|YP_004809806.1|	-	5.6	7.4	9.7	4.3	7.8	1.8	2.1	1	1	1	2	2	2	0	Reactive	mitochondrial	oxygen	species	modulator	1
ABC_tran	PF00005.27	gi|345006956|ref|YP_004809808.1|	-	1.2e-27	97.1	0.0	1.7e-27	96.6	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|345006956|ref|YP_004809808.1|	-	4.6e-15	56.2	0.6	7.3e-11	42.4	0.0	2.2	1	1	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_23	PF13476.6	gi|345006956|ref|YP_004809808.1|	-	0.00077	20.0	0.0	0.0012	19.4	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
AAA_15	PF13175.6	gi|345006956|ref|YP_004809808.1|	-	0.00084	19.2	0.0	1.4	8.6	0.0	2.1	1	1	0	2	2	2	2	AAA	ATPase	domain
AAA_29	PF13555.6	gi|345006956|ref|YP_004809808.1|	-	0.0012	18.6	0.2	0.0022	17.7	0.2	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
Mg_chelatase	PF01078.21	gi|345006956|ref|YP_004809808.1|	-	0.026	13.9	0.0	0.04	13.3	0.0	1.5	1	0	0	1	1	1	0	Magnesium	chelatase,	subunit	ChlI
AAA_30	PF13604.6	gi|345006956|ref|YP_004809808.1|	-	0.028	14.1	0.0	0.056	13.2	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
AAA_22	PF13401.6	gi|345006956|ref|YP_004809808.1|	-	0.035	14.4	0.0	0.4	11.0	0.0	2.1	2	0	0	2	2	2	0	AAA	domain
AAA_13	PF13166.6	gi|345006956|ref|YP_004809808.1|	-	0.043	12.5	0.3	2.4	6.7	0.0	2.1	2	0	0	2	2	2	0	AAA	domain
AAA_27	PF13514.6	gi|345006956|ref|YP_004809808.1|	-	0.13	11.9	0.0	0.23	11.1	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
AAA_16	PF13191.6	gi|345006956|ref|YP_004809808.1|	-	0.13	12.6	0.1	0.29	11.5	0.1	1.6	1	1	0	1	1	1	0	AAA	ATPase	domain
HTH_3	PF01381.22	gi|345006958|ref|YP_004809810.1|	-	2.3e-16	59.6	0.0	2.6e-16	59.4	0.0	1.1	1	0	0	1	1	1	1	Helix-turn-helix
HTH_31	PF13560.6	gi|345006958|ref|YP_004809810.1|	-	4.5e-10	39.7	0.0	5.1e-10	39.5	0.0	1.0	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_19	PF12844.7	gi|345006958|ref|YP_004809810.1|	-	2.1e-08	34.1	0.0	2.1e-08	34.0	0.0	1.1	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_26	PF13443.6	gi|345006958|ref|YP_004809810.1|	-	4.2e-07	30.3	0.0	4.7e-07	30.1	0.0	1.1	1	0	0	1	1	1	1	Cro/C1-type	HTH	DNA-binding	domain
HTH_24	PF13412.6	gi|345006958|ref|YP_004809810.1|	-	0.00015	21.3	0.0	0.00023	20.7	0.0	1.2	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_11	PF08279.12	gi|345006958|ref|YP_004809810.1|	-	0.00021	21.2	0.1	0.0037	17.2	0.1	2.0	2	0	0	2	2	2	1	HTH	domain
Sigma70_r4	PF04545.16	gi|345006958|ref|YP_004809810.1|	-	0.00024	20.5	0.0	0.0005	19.5	0.1	1.5	2	0	0	2	2	2	1	Sigma-70,	region	4
HTH_25	PF13413.6	gi|345006958|ref|YP_004809810.1|	-	0.0003	20.6	0.1	0.00037	20.3	0.1	1.2	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_Crp_2	PF13545.6	gi|345006958|ref|YP_004809810.1|	-	0.00086	19.2	0.0	0.0016	18.4	0.1	1.5	2	0	0	2	2	2	1	Crp-like	helix-turn-helix	domain
MarR_2	PF12802.7	gi|345006958|ref|YP_004809810.1|	-	0.0043	16.9	0.0	0.0069	16.3	0.0	1.3	1	0	0	1	1	1	1	MarR	family
YdaS_antitoxin	PF15943.5	gi|345006958|ref|YP_004809810.1|	-	0.011	15.5	0.0	0.016	15.1	0.0	1.4	1	1	0	1	1	1	0	Putative	antitoxin	of	bacterial	toxin-antitoxin	system,	YdaS/YdaT
HTH_23	PF13384.6	gi|345006958|ref|YP_004809810.1|	-	0.015	15.1	0.0	0.028	14.2	0.0	1.4	2	0	0	2	2	2	0	Homeodomain-like	domain
HTH_37	PF13744.6	gi|345006958|ref|YP_004809810.1|	-	0.023	14.6	0.0	0.024	14.6	0.0	1.2	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_AsnC-type	PF13404.6	gi|345006958|ref|YP_004809810.1|	-	0.029	14.2	0.1	0.049	13.5	0.1	1.3	1	0	0	1	1	1	0	AsnC-type	helix-turn-helix	domain
Crp	PF00325.20	gi|345006958|ref|YP_004809810.1|	-	0.034	13.8	0.0	0.067	12.9	0.0	1.5	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	crp	family
GntR	PF00392.21	gi|345006958|ref|YP_004809810.1|	-	0.053	13.2	0.0	0.073	12.7	0.0	1.4	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	gntR	family
CENP-B_N	PF04218.13	gi|345006958|ref|YP_004809810.1|	-	0.065	12.9	0.1	0.1	12.2	0.1	1.4	1	0	0	1	1	1	0	CENP-B	N-terminal	DNA-binding	domain
DUF1323	PF07037.11	gi|345006958|ref|YP_004809810.1|	-	0.077	13.4	0.0	0.1	13.0	0.0	1.2	1	0	0	1	1	1	0	Putative	transcription	regulator	(DUF1323)
MarR	PF01047.22	gi|345006958|ref|YP_004809810.1|	-	0.092	12.7	0.0	0.23	11.4	0.0	1.6	2	0	0	2	2	2	0	MarR	family
HTH_28	PF13518.6	gi|345006958|ref|YP_004809810.1|	-	0.11	12.7	0.1	0.16	12.1	0.1	1.3	1	0	0	1	1	1	0	Helix-turn-helix	domain
MerR	PF00376.23	gi|345006958|ref|YP_004809810.1|	-	0.16	11.7	0.0	0.26	11.1	0.0	1.3	1	0	0	1	1	1	0	MerR	family	regulatory	protein
SdpI	PF13630.6	gi|345006959|ref|YP_004809811.1|	-	0.0025	17.9	0.1	0.0025	17.9	0.1	2.3	2	0	0	2	2	2	1	SdpI/YhfL	protein	family
DUF2178	PF09946.9	gi|345006959|ref|YP_004809811.1|	-	0.0037	17.4	1.2	0.0054	16.9	1.2	1.2	1	0	0	1	1	1	1	Predicted	membrane	protein	(DUF2178)
DUF3464	PF11947.8	gi|345006959|ref|YP_004809811.1|	-	0.17	11.7	2.9	0.3	10.8	2.9	1.4	1	0	0	1	1	1	0	Photosynthesis	affected	mutant	68
DUF2583	PF10762.9	gi|345006959|ref|YP_004809811.1|	-	1	9.8	4.6	0.78	10.2	0.7	2.2	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2583)
DUF443	PF04276.12	gi|345006960|ref|YP_004809812.1|	-	0.055	13.3	0.7	0.061	13.1	0.7	1.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF443)
Phage_holin_3_6	PF07332.11	gi|345006960|ref|YP_004809812.1|	-	1.5	8.9	8.6	1.9	8.6	8.6	1.1	1	0	0	1	1	1	0	Putative	Actinobacterial	Holin-X,	holin	superfamily	III
Phage_integrase	PF00589.22	gi|345006961|ref|YP_004809813.1|	-	5.3e-12	45.9	0.1	1.7e-11	44.2	0.1	1.8	1	1	0	1	1	1	1	Phage	integrase	family
Phage_int_SAM_1	PF02899.17	gi|345006961|ref|YP_004809813.1|	-	9.2e-07	29.1	0.1	4.2e-06	27.0	0.1	2.0	2	0	0	2	2	2	1	Phage	integrase,	N-terminal	SAM-like	domain
Phage_int_SAM_4	PF13495.6	gi|345006961|ref|YP_004809813.1|	-	1.5e-05	25.4	0.0	3.7e-05	24.1	0.0	1.6	1	0	0	1	1	1	1	Phage	integrase,	N-terminal	SAM-like	domain
Phage_int_SAM_5	PF13102.6	gi|345006961|ref|YP_004809813.1|	-	0.0034	17.7	0.0	0.016	15.5	0.0	2.0	2	0	0	2	2	2	1	Phage	integrase	SAM-like	domain
Sigma_1s	PF02454.16	gi|345006961|ref|YP_004809813.1|	-	0.051	13.6	0.1	0.13	12.3	0.1	1.7	1	0	0	1	1	1	0	Sigma	1s	protein
N6_Mtase	PF02384.16	gi|345006962|ref|YP_004809814.1|	-	3.5e-11	42.9	0.0	6.8e-11	42.0	0.0	1.3	1	0	0	1	1	1	1	N-6	DNA	Methylase
TaqI_C	PF12950.7	gi|345006962|ref|YP_004809814.1|	-	2.4e-07	30.9	0.0	4.1e-07	30.1	0.0	1.3	1	0	0	1	1	1	1	TaqI-like	C-terminal	specificity	domain
Eco57I	PF07669.11	gi|345006962|ref|YP_004809814.1|	-	1.7e-06	28.5	0.0	7e-06	26.5	0.0	1.9	2	0	0	2	2	2	1	Eco57I	restriction-modification	methylase
MTS	PF05175.14	gi|345006962|ref|YP_004809814.1|	-	0.0033	17.0	0.0	0.0067	16.0	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	small	domain
Methyltransf_25	PF13649.6	gi|345006962|ref|YP_004809814.1|	-	0.0051	17.5	0.0	0.61	10.8	0.0	3.3	3	0	0	3	3	3	1	Methyltransferase	domain
Methyltransf_31	PF13847.6	gi|345006962|ref|YP_004809814.1|	-	0.034	14.0	0.0	0.072	12.9	0.0	1.6	1	0	0	1	1	1	0	Methyltransferase	domain
UvrD-helicase	PF00580.21	gi|345006963|ref|YP_004809815.1|	-	2.5e-56	191.5	0.0	2.3e-27	96.3	0.0	2.4	2	0	0	2	2	2	2	UvrD/REP	helicase	N-terminal	domain
AAA_19	PF13245.6	gi|345006963|ref|YP_004809815.1|	-	5.5e-31	107.9	0.0	1.3e-30	106.7	0.0	1.7	1	0	0	1	1	1	1	AAA	domain
UvrD_C	PF13361.6	gi|345006963|ref|YP_004809815.1|	-	3.3e-29	102.4	0.0	2e-13	50.5	0.0	2.2	2	0	0	2	2	2	2	UvrD-like	helicase	C-terminal	domain
PDDEXK_1	PF12705.7	gi|345006963|ref|YP_004809815.1|	-	1.6e-22	80.7	1.3	4e-22	79.4	1.3	1.7	1	0	0	1	1	1	1	PD-(D/E)XK	nuclease	superfamily
UvrD_C_2	PF13538.6	gi|345006963|ref|YP_004809815.1|	-	9.7e-08	31.7	0.5	0.0026	17.6	0.0	2.9	3	0	0	3	3	3	2	UvrD-like	helicase	C-terminal	domain
AAA_30	PF13604.6	gi|345006963|ref|YP_004809815.1|	-	7.8e-07	29.0	0.0	8.1e-05	22.4	0.0	2.4	2	0	0	2	2	2	1	AAA	domain
AAA_11	PF13086.6	gi|345006963|ref|YP_004809815.1|	-	0.039	13.7	0.0	0.071	12.9	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
Gelsolin	PF00626.22	gi|345006963|ref|YP_004809815.1|	-	0.043	13.7	0.0	0.11	12.5	0.0	1.6	1	0	0	1	1	1	0	Gelsolin	repeat
DDE_Tnp_IS240	PF13610.6	gi|345006964|ref|YP_004809816.1|	-	1.5e-09	38.2	0.0	2.1e-09	37.7	0.0	1.2	1	0	0	1	1	1	1	DDE	domain
DUF3883	PF13020.6	gi|345006965|ref|YP_004809817.1|	-	1.4e-06	28.2	0.0	8.6e-06	25.7	0.0	2.0	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF3883)
Ribosomal_L21e	PF01157.18	gi|345006966|ref|YP_004809818.1|	-	0.013	15.3	0.0	0.016	15.1	0.0	1.2	1	0	0	1	1	1	0	Ribosomal	protein	L21e
DUF4596	PF15363.6	gi|345006966|ref|YP_004809818.1|	-	0.09	13.0	0.0	0.28	11.4	0.1	1.8	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4596)
DUF87	PF01935.17	gi|345006967|ref|YP_004809819.1|	-	8.1e-34	117.7	0.0	1.2e-33	117.1	0.0	1.3	1	0	0	1	1	1	1	Helicase	HerA,	central	domain
DUF853	PF05872.12	gi|345006967|ref|YP_004809819.1|	-	4.3e-06	25.6	0.0	1.3e-05	24.0	0.0	1.6	2	0	0	2	2	2	1	Bacterial	protein	of	unknown	function	(DUF853)
TrwB_AAD_bind	PF10412.9	gi|345006967|ref|YP_004809819.1|	-	0.011	14.7	0.0	0.092	11.6	0.0	2.0	2	0	0	2	2	2	0	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
HAS-barrel	PF09378.10	gi|345006967|ref|YP_004809819.1|	-	0.055	13.6	0.0	0.11	12.6	0.0	1.5	1	0	0	1	1	1	0	HAS	barrel	domain
AAA_10	PF12846.7	gi|345006967|ref|YP_004809819.1|	-	0.078	11.9	0.0	0.17	10.7	0.0	1.5	2	0	0	2	2	2	0	AAA-like	domain
ResIII	PF04851.15	gi|345006967|ref|YP_004809819.1|	-	0.12	12.3	0.0	0.25	11.3	0.0	1.4	1	0	0	1	1	1	0	Type	III	restriction	enzyme,	res	subunit
NurA	PF09376.10	gi|345006969|ref|YP_004809821.1|	-	3.8e-15	56.2	0.0	4.9e-15	55.9	0.0	1.1	1	0	0	1	1	1	1	NurA	domain
Polysacc_deac_1	PF01522.21	gi|345006969|ref|YP_004809821.1|	-	0.028	14.3	0.0	1.6	8.6	0.0	2.5	2	0	0	2	2	2	0	Polysaccharide	deacetylase
AAA_15	PF13175.6	gi|345006970|ref|YP_004809822.1|	-	8.3e-14	52.1	15.4	5.3e-12	46.1	1.1	3.7	1	1	1	2	2	2	1	AAA	ATPase	domain
SMC_N	PF02463.19	gi|345006970|ref|YP_004809822.1|	-	5.9e-12	45.5	0.0	5.9e-12	45.5	0.0	2.7	2	1	0	3	3	2	1	RecF/RecN/SMC	N	terminal	domain
AAA_23	PF13476.6	gi|345006970|ref|YP_004809822.1|	-	6e-11	43.2	101.4	0.001	19.6	56.2	7.3	1	1	1	3	3	1	1	AAA	domain
AAA_13	PF13166.6	gi|345006970|ref|YP_004809822.1|	-	2.5e-08	33.1	72.5	0.02	13.6	0.1	6.0	3	2	3	6	6	6	4	AAA	domain
BLOC1_2	PF10046.9	gi|345006970|ref|YP_004809822.1|	-	9.8e-06	25.8	63.8	0.0047	17.2	2.4	9.1	3	2	3	8	8	8	4	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
AAA_21	PF13304.6	gi|345006970|ref|YP_004809822.1|	-	3.3e-05	23.9	26.9	0.00041	20.3	0.3	4.0	1	1	1	3	3	2	1	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SbcCD_C	PF13558.6	gi|345006970|ref|YP_004809822.1|	-	6.9e-05	23.0	0.0	0.00021	21.5	0.0	1.8	1	0	0	1	1	1	1	Putative	exonuclease	SbcCD,	C	subunit
Spc7	PF08317.11	gi|345006970|ref|YP_004809822.1|	-	0.0001	21.3	104.8	0.0072	15.2	13.5	6.6	2	2	5	7	7	7	5	Spc7	kinetochore	protein
AAA_29	PF13555.6	gi|345006970|ref|YP_004809822.1|	-	0.00012	21.8	0.0	0.00021	20.9	0.0	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
PspA_IM30	PF04012.12	gi|345006970|ref|YP_004809822.1|	-	0.00018	21.1	13.3	0.00018	21.1	13.3	5.5	2	2	3	5	5	3	1	PspA/IM30	family
GAS	PF13851.6	gi|345006970|ref|YP_004809822.1|	-	0.00019	20.9	86.0	0.00088	18.7	16.9	7.3	2	2	4	7	7	7	4	Growth-arrest	specific	micro-tubule	binding
DUF5082	PF16888.5	gi|345006970|ref|YP_004809822.1|	-	0.00021	21.6	3.8	0.00021	21.6	3.8	9.8	3	2	5	9	9	7	2	Domain	of	unknown	function	(DUF5082)
NPV_P10	PF05531.12	gi|345006970|ref|YP_004809822.1|	-	0.0013	19.1	24.9	0.22	12.0	0.8	7.7	4	2	4	8	8	8	1	Nucleopolyhedrovirus	P10	protein
Rad50_zn_hook	PF04423.14	gi|345006970|ref|YP_004809822.1|	-	0.0021	17.9	0.2	0.0021	17.9	0.2	6.7	6	1	1	7	7	5	1	Rad50	zinc	hook	motif
DUF4407	PF14362.6	gi|345006970|ref|YP_004809822.1|	-	0.0032	16.9	76.1	0.19	11.0	12.4	4.8	2	2	2	4	4	4	3	Domain	of	unknown	function	(DUF4407)
Dor1	PF04124.12	gi|345006970|ref|YP_004809822.1|	-	0.0053	15.5	3.7	0.0053	15.5	3.7	4.5	2	2	2	5	5	5	1	Dor1-like	family
FliJ	PF02050.16	gi|345006970|ref|YP_004809822.1|	-	0.0054	16.9	61.2	0.055	13.7	3.0	6.6	2	2	2	5	5	5	2	Flagellar	FliJ	protein
ABC_tran	PF00005.27	gi|345006970|ref|YP_004809822.1|	-	0.012	16.1	19.6	0.017	15.7	0.1	5.4	2	1	0	2	2	1	0	ABC	transporter
DUF3584	PF12128.8	gi|345006970|ref|YP_004809822.1|	-	0.046	11.3	97.3	0.17	9.4	33.4	4.1	3	1	1	4	4	4	0	Protein	of	unknown	function	(DUF3584)
T3SSipB	PF16535.5	gi|345006970|ref|YP_004809822.1|	-	0.1	13.1	50.0	0.22	12.0	2.1	6.4	2	2	2	4	4	4	0	Type	III	cell	invasion	protein	SipB
Fib_alpha	PF08702.10	gi|345006970|ref|YP_004809822.1|	-	0.12	12.5	41.6	1.1	9.4	0.5	6.8	4	1	2	6	6	6	0	Fibrinogen	alpha/beta	chain	family
Occludin_ELL	PF07303.13	gi|345006970|ref|YP_004809822.1|	-	0.18	12.5	41.6	0.22	12.3	0.9	7.2	3	2	5	8	8	8	0	Occludin	homology	domain
MukB	PF04310.12	gi|345006970|ref|YP_004809822.1|	-	0.5	10.1	0.0	0.5	10.1	0.0	3.0	3	1	0	4	4	4	0	MukB	N-terminal
PLAC9	PF15205.6	gi|345006970|ref|YP_004809822.1|	-	0.73	10.3	0.0	0.73	10.3	0.0	5.0	5	2	1	6	6	3	0	Placenta-specific	protein	9
DUF4988	PF16378.5	gi|345006970|ref|YP_004809822.1|	-	0.93	9.1	15.8	1.8	8.2	0.1	5.2	4	1	1	5	5	5	0	Domain	of	unknown	function
DUF812	PF05667.11	gi|345006970|ref|YP_004809822.1|	-	1.5	7.6	90.6	0.27	10.1	15.2	4.6	1	1	2	4	4	4	0	Protein	of	unknown	function	(DUF812)
MAD	PF05557.13	gi|345006970|ref|YP_004809822.1|	-	2.1	6.6	94.1	0.18	10.1	18.4	4.1	2	2	2	4	4	4	0	Mitotic	checkpoint	protein
DUF4201	PF13870.6	gi|345006970|ref|YP_004809822.1|	-	3.3	7.4	69.7	0.36	10.5	6.1	6.8	2	2	4	6	6	6	0	Domain	of	unknown	function	(DUF4201)
Fez1	PF06818.15	gi|345006970|ref|YP_004809822.1|	-	5.1	7.5	94.5	0.68	10.4	23.9	5.2	1	1	3	4	4	4	0	Fez1
FlaC_arch	PF05377.11	gi|345006970|ref|YP_004809822.1|	-	6.4	7.2	71.4	0.35	11.3	5.0	12.0	6	5	4	11	11	10	0	Flagella	accessory	protein	C	(FlaC)
TMF_TATA_bd	PF12325.8	gi|345006970|ref|YP_004809822.1|	-	9.6	6.5	112.1	0.57	10.4	1.2	8.5	2	2	4	8	8	6	0	TATA	element	modulatory	factor	1	TATA	binding
Metallophos	PF00149.28	gi|345006971|ref|YP_004809823.1|	-	3.3e-12	47.3	0.0	5.7e-12	46.6	0.0	1.4	1	0	0	1	1	1	1	Calcineurin-like	phosphoesterase
Metallophos_2	PF12850.7	gi|345006971|ref|YP_004809823.1|	-	3e-09	37.3	0.0	2.6e-07	31.0	0.0	2.4	1	1	0	1	1	1	1	Calcineurin-like	phosphoesterase	superfamily	domain
DEAD	PF00270.29	gi|345006972|ref|YP_004809824.1|	-	1.1e-29	103.4	0.0	2.2e-29	102.4	0.0	1.5	1	0	0	1	1	1	1	DEAD/DEAH	box	helicase
Helicase_C	PF00271.31	gi|345006972|ref|YP_004809824.1|	-	2.2e-12	47.3	0.0	9.7e-12	45.2	0.0	2.1	2	0	0	2	2	2	1	Helicase	conserved	C-terminal	domain
DUF2791	PF10923.8	gi|345006973|ref|YP_004809825.1|	-	1.1e-159	531.7	0.1	1.3e-159	531.5	0.1	1.0	1	0	0	1	1	1	1	P-loop	Domain	of	unknown	function	(DUF2791)
AAA_16	PF13191.6	gi|345006973|ref|YP_004809825.1|	-	8e-08	32.8	1.2	2e-07	31.6	1.2	1.8	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_22	PF13401.6	gi|345006973|ref|YP_004809825.1|	-	3.5e-06	27.3	0.0	0.013	15.7	0.0	2.6	1	1	0	1	1	1	1	AAA	domain
Sigma54_activ_2	PF14532.6	gi|345006973|ref|YP_004809825.1|	-	0.047	13.8	0.0	0.1	12.7	0.0	1.6	1	0	0	1	1	1	0	Sigma-54	interaction	domain
TerB_N	PF13208.6	gi|345006974|ref|YP_004809826.1|	-	1.5e-62	211.0	0.0	5.1e-62	209.3	0.0	1.9	2	0	0	2	2	2	1	TerB	N-terminal	domain
TerB_C	PF15615.6	gi|345006974|ref|YP_004809826.1|	-	3.5e-40	137.8	9.4	3.5e-40	137.8	9.4	2.6	2	0	0	2	2	2	1	TerB-C	domain
TM2	PF05154.16	gi|345006974|ref|YP_004809826.1|	-	3.4e-16	59.3	7.7	5.2e-16	58.7	7.7	1.3	1	0	0	1	1	1	1	TM2	domain
TerB	PF05099.13	gi|345006974|ref|YP_004809826.1|	-	0.00023	21.1	0.1	0.00078	19.4	0.1	1.9	1	0	0	1	1	1	1	Tellurite	resistance	protein	TerB
CENP-I	PF07778.11	gi|345006974|ref|YP_004809826.1|	-	0.13	10.9	0.6	0.2	10.3	0.6	1.2	1	0	0	1	1	1	0	Mis6
NucS	PF01939.16	gi|345006976|ref|YP_004809828.1|	-	1.7e-05	24.3	0.0	2.9e-05	23.5	0.0	1.3	1	0	0	1	1	1	1	Endonuclease	NucS
MmcB-like	PF06319.12	gi|345006976|ref|YP_004809828.1|	-	0.031	14.0	0.0	0.051	13.3	0.0	1.3	1	0	0	1	1	1	0	DNA	repair	protein	MmcB-like
IF2_N	PF04760.15	gi|345006976|ref|YP_004809828.1|	-	0.032	14.0	0.0	0.94	9.4	0.0	2.5	2	0	0	2	2	2	0	Translation	initiation	factor	IF-2,	N-terminal	region
TrmB	PF01978.19	gi|345006978|ref|YP_004809830.1|	-	0.0008	19.2	0.0	0.0011	18.9	0.0	1.2	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
MarR_2	PF12802.7	gi|345006978|ref|YP_004809830.1|	-	0.0027	17.5	0.0	0.0047	16.8	0.0	1.3	1	0	0	1	1	1	1	MarR	family
HTH_Crp_2	PF13545.6	gi|345006978|ref|YP_004809830.1|	-	0.017	15.1	0.0	0.021	14.8	0.0	1.4	1	0	0	1	1	1	0	Crp-like	helix-turn-helix	domain
MarR	PF01047.22	gi|345006978|ref|YP_004809830.1|	-	0.021	14.8	0.0	0.033	14.1	0.0	1.4	1	0	0	1	1	1	0	MarR	family
HTH_11	PF08279.12	gi|345006978|ref|YP_004809830.1|	-	0.077	13.0	0.0	0.13	12.3	0.0	1.4	1	0	0	1	1	1	0	HTH	domain
HTH_3	PF01381.22	gi|345006978|ref|YP_004809830.1|	-	0.14	12.2	0.0	0.37	10.9	0.0	1.7	1	0	0	1	1	1	0	Helix-turn-helix
HTH_45	PF14947.6	gi|345006978|ref|YP_004809830.1|	-	0.19	11.7	0.0	0.27	11.3	0.0	1.2	1	0	0	1	1	1	0	Winged	helix-turn-helix
Voltage_CLC	PF00654.20	gi|345006980|ref|YP_004809832.1|	-	0.00019	20.8	5.1	0.00022	20.6	5.1	1.1	1	0	0	1	1	1	1	Voltage	gated	chloride	channel
DUF3958	PF13125.6	gi|345006980|ref|YP_004809832.1|	-	0.26	11.5	0.1	0.43	10.8	0.1	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3958)
3HCDH_RFF	PF18321.1	gi|345006981|ref|YP_004809833.1|	-	0.13	12.7	0.0	0.2	12.1	0.0	1.2	1	0	0	1	1	1	0	3-hydroxybutyryl-CoA	dehydrogenase	reduced	Rossmann-fold	domain
Rep_fac_C	PF08542.11	gi|345006982|ref|YP_004809834.1|	-	0.047	14.1	0.0	0.15	12.5	0.0	1.8	2	0	0	2	2	2	0	Replication	factor	C	C-terminal	domain
GHL6	PF14871.6	gi|345006982|ref|YP_004809834.1|	-	0.11	12.7	0.0	0.19	11.9	0.0	1.3	1	0	0	1	1	1	0	Hypothetical	glycosyl	hydrolase	6
Prok-RING_4	PF14447.6	gi|345006983|ref|YP_004809835.1|	-	0.00058	19.7	0.8	0.022	14.6	0.1	2.1	2	0	0	2	2	2	1	Prokaryotic	RING	finger	family	4
FANCL_C	PF11793.8	gi|345006983|ref|YP_004809835.1|	-	0.002	18.3	0.6	0.1	12.8	0.1	2.1	2	0	0	2	2	2	1	FANCL	C-terminal	domain
zf-C3HC4_3	PF13920.6	gi|345006983|ref|YP_004809835.1|	-	0.011	15.6	0.8	0.66	9.9	0.1	2.1	2	0	0	2	2	2	0	Zinc	finger,	C3HC4	type	(RING	finger)
zf-Sec23_Sec24	PF04810.15	gi|345006983|ref|YP_004809835.1|	-	0.011	15.8	0.5	1.2	9.2	0.1	2.1	2	0	0	2	2	2	0	Sec23/Sec24	zinc	finger
DZR	PF12773.7	gi|345006983|ref|YP_004809835.1|	-	0.014	15.4	0.2	0.019	14.9	0.2	1.3	1	1	0	1	1	1	0	Double	zinc	ribbon
CC	PF04942.14	gi|345006983|ref|YP_004809835.1|	-	0.02	15.1	0.9	5.8	7.2	0.0	2.4	3	0	0	3	3	3	0	CC	domain
UPF0547	PF10571.9	gi|345006983|ref|YP_004809835.1|	-	0.021	14.9	3.9	1.6	8.9	0.1	2.1	2	0	0	2	2	2	0	Uncharacterised	protein	family	UPF0547
Lar_restr_allev	PF14354.6	gi|345006983|ref|YP_004809835.1|	-	0.034	14.5	0.5	0.042	14.2	0.5	1.2	1	0	0	1	1	1	0	Restriction	alleviation	protein	Lar
zf-piccolo	PF05715.13	gi|345006983|ref|YP_004809835.1|	-	0.063	13.4	1.3	0.2	11.9	1.3	1.7	1	1	0	1	1	1	0	Piccolo	Zn-finger
Elf1	PF05129.13	gi|345006983|ref|YP_004809835.1|	-	0.075	13.1	0.1	0.083	12.9	0.1	1.1	1	0	0	1	1	1	0	Transcription	elongation	factor	Elf1	like
zf-H2C2_2	PF13465.6	gi|345006983|ref|YP_004809835.1|	-	0.088	13.3	1.4	3.3	8.3	0.1	2.1	2	0	0	2	2	2	0	Zinc-finger	double	domain
zf-Di19	PF05605.12	gi|345006983|ref|YP_004809835.1|	-	0.1	12.9	2.6	0.21	11.9	2.6	1.5	1	1	0	1	1	1	0	Drought	induced	19	protein	(Di19),	zinc-binding
zf-TFIIB	PF13453.6	gi|345006983|ref|YP_004809835.1|	-	0.14	11.5	2.6	0.52	9.7	2.5	1.8	1	1	1	2	2	2	0	Transcription	factor	zinc-finger
zf-LITAF-like	PF10601.9	gi|345006983|ref|YP_004809835.1|	-	0.24	11.7	4.7	0.94	9.8	0.7	2.1	1	1	1	2	2	2	0	LITAF-like	zinc	ribbon	domain
zf-ribbon_3	PF13248.6	gi|345006984|ref|YP_004809836.1|	-	5e-07	28.9	2.5	8.5e-07	28.2	2.5	1.3	1	0	0	1	1	1	1	zinc-ribbon	domain
zinc_ribbon_2	PF13240.6	gi|345006984|ref|YP_004809836.1|	-	3.8e-06	26.4	2.0	5.7e-06	25.9	2.0	1.2	1	0	0	1	1	1	1	zinc-ribbon	domain
DZR	PF12773.7	gi|345006984|ref|YP_004809836.1|	-	3.6e-05	23.7	2.4	4.9e-05	23.3	2.4	1.2	1	0	0	1	1	1	1	Double	zinc	ribbon
RNA_POL_M_15KD	PF02150.16	gi|345006984|ref|YP_004809836.1|	-	7.5e-05	22.5	3.2	0.00011	22.0	0.3	2.0	1	1	0	2	2	2	1	RNA	polymerases	M/15	Kd	subunit
zinc_ribbon_15	PF17032.5	gi|345006984|ref|YP_004809836.1|	-	0.00045	20.9	1.3	0.0005	20.8	1.3	1.1	1	0	0	1	1	1	1	zinc-ribbon	family
HypA	PF01155.19	gi|345006984|ref|YP_004809836.1|	-	0.00062	19.8	1.5	0.00062	19.8	1.5	1.1	1	0	0	1	1	1	1	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
Zn-ribbon_8	PF09723.10	gi|345006984|ref|YP_004809836.1|	-	0.001	19.1	5.3	0.0025	17.9	5.3	1.6	1	1	0	1	1	1	1	Zinc	ribbon	domain
DUF1272	PF06906.11	gi|345006984|ref|YP_004809836.1|	-	0.0021	18.1	1.0	0.0026	17.8	1.0	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1272)
zf-C3HC4_3	PF13920.6	gi|345006984|ref|YP_004809836.1|	-	0.015	15.2	1.2	0.037	13.9	1.2	1.7	1	1	0	1	1	1	0	Zinc	finger,	C3HC4	type	(RING	finger)
Zn_Tnp_IS1595	PF12760.7	gi|345006984|ref|YP_004809836.1|	-	0.017	15.1	1.2	3.7	7.6	0.0	2.2	2	0	0	2	2	2	0	Transposase	zinc-ribbon	domain
zf-IS66	PF13005.7	gi|345006984|ref|YP_004809836.1|	-	0.019	15.3	1.8	1.9	9.0	0.1	2.3	2	0	0	2	2	2	0	zinc-finger	binding	domain	of	transposase	IS66
zinc-ribbon_6	PF10005.9	gi|345006984|ref|YP_004809836.1|	-	0.037	14.7	0.3	0.047	14.4	0.3	1.2	1	0	0	1	1	1	0	zinc-ribbon	domain
zinc_ribbon_4	PF13717.6	gi|345006984|ref|YP_004809836.1|	-	0.066	13.1	1.9	6.9	6.7	0.1	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
TF_Zn_Ribbon	PF08271.12	gi|345006984|ref|YP_004809836.1|	-	0.081	12.4	3.5	0.15	11.6	3.5	1.5	1	0	0	1	1	1	0	TFIIB	zinc-binding
zf-C4_Topoisom	PF01396.19	gi|345006984|ref|YP_004809836.1|	-	0.083	12.7	1.5	0.49	10.2	0.0	2.3	2	1	1	3	3	3	0	Topoisomerase	DNA	binding	C4	zinc	finger
CpXC	PF14353.6	gi|345006984|ref|YP_004809836.1|	-	0.086	12.9	1.9	0.74	9.9	0.1	2.0	1	1	1	2	2	2	0	CpXC	protein
C1_2	PF03107.16	gi|345006984|ref|YP_004809836.1|	-	0.11	12.9	1.7	0.95	9.8	1.4	2.1	1	1	0	1	1	1	0	C1	domain
Ogr_Delta	PF04606.12	gi|345006984|ref|YP_004809836.1|	-	0.11	12.5	3.3	0.67	10.0	0.3	2.1	2	0	0	2	2	2	0	Ogr/Delta-like	zinc	finger
zf-Mss51	PF13824.6	gi|345006984|ref|YP_004809836.1|	-	0.12	12.5	3.6	0.54	10.4	0.1	2.1	1	1	1	2	2	2	0	Zinc-finger	of	mitochondrial	splicing	suppressor	51
DUF2688	PF10892.8	gi|345006984|ref|YP_004809836.1|	-	0.15	11.5	4.2	0.58	9.7	4.2	1.9	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF2688)
Rubredoxin_2	PF18073.1	gi|345006984|ref|YP_004809836.1|	-	0.17	11.7	4.6	1.9	8.3	0.4	2.2	2	0	0	2	2	2	0	Rubredoxin	metal	binding	domain
OrfB_Zn_ribbon	PF07282.11	gi|345006984|ref|YP_004809836.1|	-	0.28	11.1	4.8	0.83	9.6	0.6	2.0	1	1	1	2	2	2	0	Putative	transposase	DNA-binding	domain
zinc_ribbon_9	PF14369.6	gi|345006984|ref|YP_004809836.1|	-	0.32	11.3	4.9	0.72	10.2	4.9	1.6	1	1	0	1	1	1	0	zinc-ribbon
Mu-like_Com	PF10122.9	gi|345006984|ref|YP_004809836.1|	-	0.35	10.3	4.2	0.72	9.4	0.2	2.1	1	1	1	2	2	2	0	Mu-like	prophage	protein	Com
zf_UBZ	PF18439.1	gi|345006984|ref|YP_004809836.1|	-	0.36	10.5	5.5	0.58	9.8	0.2	2.4	2	1	1	3	3	3	0	Ubiquitin-Binding	Zinc	Finger
PadR	PF03551.14	gi|345006986|ref|YP_004809838.1|	-	9.2e-16	57.6	0.8	1.2e-15	57.2	0.8	1.2	1	0	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
DUF1495	PF07381.11	gi|345006986|ref|YP_004809838.1|	-	0.006	16.4	0.0	0.0098	15.7	0.0	1.3	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain	(DUF1495)
HTH_45	PF14947.6	gi|345006986|ref|YP_004809838.1|	-	0.0065	16.4	0.0	0.01	15.8	0.0	1.5	1	0	0	1	1	1	1	Winged	helix-turn-helix
HalOD1	PF18545.1	gi|345006987|ref|YP_004809839.1|	-	7.3e-24	83.8	1.2	9.5e-24	83.5	1.2	1.2	1	0	0	1	1	1	1	Halobacterial	output	domain	1
CytB6-F_Fe-S	PF08802.10	gi|345006988|ref|YP_004809840.1|	-	0.0058	16.6	0.3	0.013	15.5	0.3	1.5	1	0	0	1	1	1	1	Cytochrome	B6-F	complex	Fe-S	subunit
DDE_Tnp_1	PF01609.21	gi|345006989|ref|YP_004809841.1|	-	0.031	13.9	0.1	0.085	12.5	0.1	1.7	1	1	0	1	1	1	0	Transposase	DDE	domain
GerE	PF00196.19	gi|345006991|ref|YP_004809843.1|	-	4.5e-05	22.9	0.1	0.00012	21.5	0.0	1.7	2	0	0	2	2	2	1	Bacterial	regulatory	proteins,	luxR	family
ADP_ribosyl_GH	PF03747.14	gi|345006992|ref|YP_004809844.1|	-	2.7e-72	244.0	5.8	3.2e-72	243.7	5.8	1.1	1	0	0	1	1	1	1	ADP-ribosylglycohydrolase
Gly-zipper_YMGG	PF13441.6	gi|345006992|ref|YP_004809844.1|	-	0.51	10.1	4.6	9.5	6.1	1.3	2.5	2	0	0	2	2	2	0	YMGG-like	Gly-zipper
EFG_II	PF14492.6	gi|345006993|ref|YP_004809845.1|	-	0.053	13.6	0.1	0.28	11.3	0.1	2.1	2	0	0	2	2	2	0	Elongation	Factor	G,	domain	II
Sigma70_r4_2	PF08281.12	gi|345006994|ref|YP_004809846.1|	-	0.0044	16.7	0.1	0.0065	16.1	0.1	1.2	1	0	0	1	1	1	1	Sigma-70,	region	4
DUF134	PF02001.16	gi|345006994|ref|YP_004809846.1|	-	0.024	15.2	0.1	0.041	14.4	0.1	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	DUF134
Sigma70_ECF	PF07638.11	gi|345006994|ref|YP_004809846.1|	-	0.044	13.7	0.0	0.046	13.6	0.0	1.1	1	0	0	1	1	1	0	ECF	sigma	factor
Fe_hyd_lg_C	PF02906.14	gi|345006994|ref|YP_004809846.1|	-	0.054	13.2	0.5	4	7.0	0.1	2.0	1	1	1	2	2	2	0	Iron	only	hydrogenase	large	subunit,	C-terminal	domain
MarR_2	PF12802.7	gi|345006996|ref|YP_004809848.1|	-	8.8e-07	28.7	0.0	1.7e-06	27.8	0.0	1.5	1	1	0	1	1	1	1	MarR	family
PaaX	PF07848.12	gi|345006996|ref|YP_004809848.1|	-	0.00047	20.3	0.0	0.00079	19.6	0.0	1.3	1	0	0	1	1	1	1	PaaX-like	protein
HTH_20	PF12840.7	gi|345006996|ref|YP_004809848.1|	-	0.0035	17.4	0.0	0.0067	16.5	0.0	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_24	PF13412.6	gi|345006996|ref|YP_004809848.1|	-	0.015	14.9	0.0	0.03	13.9	0.0	1.6	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
Penicillinase_R	PF03965.16	gi|345006996|ref|YP_004809848.1|	-	0.015	15.6	0.0	0.017	15.4	0.0	1.2	1	0	0	1	1	1	0	Penicillinase	repressor
HTH_11	PF08279.12	gi|345006996|ref|YP_004809848.1|	-	0.019	14.9	0.0	0.041	13.8	0.0	1.5	1	0	0	1	1	1	0	HTH	domain
MarR	PF01047.22	gi|345006996|ref|YP_004809848.1|	-	0.022	14.7	0.0	0.047	13.6	0.0	1.5	1	0	0	1	1	1	0	MarR	family
DUF4423	PF14394.6	gi|345006996|ref|YP_004809848.1|	-	0.03	14.0	0.0	0.046	13.4	0.0	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4423)
HTH_27	PF13463.6	gi|345006996|ref|YP_004809848.1|	-	0.035	14.6	0.0	0.062	13.8	0.0	1.5	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
DUF2470	PF10615.9	gi|345006996|ref|YP_004809848.1|	-	0.049	14.3	0.0	0.11	13.1	0.0	1.6	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2470)
Snf7	PF03357.21	gi|345006996|ref|YP_004809848.1|	-	0.062	12.9	0.7	0.075	12.6	0.7	1.2	1	0	0	1	1	1	0	Snf7
HTH_5	PF01022.20	gi|345006996|ref|YP_004809848.1|	-	0.068	13.0	0.0	0.11	12.4	0.0	1.4	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
TrmB	PF01978.19	gi|345006996|ref|YP_004809848.1|	-	0.08	12.8	0.0	0.14	12.0	0.0	1.4	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
Fe_dep_repress	PF01325.19	gi|345006996|ref|YP_004809848.1|	-	0.081	13.1	0.0	0.14	12.4	0.0	1.3	1	0	0	1	1	1	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
Rrf2	PF02082.20	gi|345006996|ref|YP_004809848.1|	-	0.17	12.2	0.0	0.29	11.5	0.0	1.3	1	0	0	1	1	1	0	Transcriptional	regulator
Phage_integrase	PF00589.22	gi|345006998|ref|YP_004809850.1|	-	0.01	15.6	0.0	0.033	14.0	0.0	1.7	2	0	0	2	2	2	0	Phage	integrase	family
UPF0236	PF06782.11	gi|345006999|ref|YP_004809851.1|	-	9.7e-06	24.5	0.0	0.00026	19.8	0.0	2.1	2	0	0	2	2	2	2	Uncharacterised	protein	family	(UPF0236)
Transposase_mut	PF00872.18	gi|345006999|ref|YP_004809851.1|	-	0.00037	19.4	0.2	1	8.1	0.0	2.9	2	2	0	2	2	2	2	Transposase,	Mutator	family
PGA_cap	PF09587.10	gi|345007002|ref|YP_004809854.1|	-	2e-60	204.4	0.1	2.8e-60	204.0	0.1	1.2	1	0	0	1	1	1	1	Bacterial	capsule	synthesis	protein	PGA_cap
CarboxypepD_reg	PF13620.6	gi|345007002|ref|YP_004809854.1|	-	1.2e-06	28.7	0.8	1.2e-06	28.7	0.8	3.1	3	0	0	3	3	3	1	Carboxypeptidase	regulatory-like	domain
bMG3	PF11974.8	gi|345007002|ref|YP_004809854.1|	-	0.0067	16.4	0.3	0.03	14.3	0.1	2.2	3	0	0	3	3	3	1	Bacterial	alpha-2-macroglobulin	MG3	domain
CarbopepD_reg_2	PF13715.6	gi|345007002|ref|YP_004809854.1|	-	0.14	12.2	0.0	0.41	10.7	0.0	1.8	1	0	0	1	1	1	0	CarboxypepD_reg-like	domain
Big_6	PF17936.1	gi|345007002|ref|YP_004809854.1|	-	2.6	8.4	7.4	0.3	11.4	0.6	2.9	3	0	0	3	3	3	0	Bacterial	Ig	domain
Caps_synth_CapC	PF14102.6	gi|345007003|ref|YP_004809855.1|	-	1.9e-06	28.3	7.5	2.5e-06	27.9	7.5	1.2	1	0	0	1	1	1	1	Capsule	biosynthesis	CapC
UPF0236	PF06782.11	gi|345007004|ref|YP_004809856.1|	-	9.7e-06	24.5	0.0	0.00026	19.8	0.0	2.1	2	0	0	2	2	2	2	Uncharacterised	protein	family	(UPF0236)
Transposase_mut	PF00872.18	gi|345007004|ref|YP_004809856.1|	-	0.00037	19.4	0.2	1	8.1	0.0	2.9	2	2	0	2	2	2	2	Transposase,	Mutator	family
Phage_int_SAM_5	PF13102.6	gi|345007005|ref|YP_004809857.1|	-	0.081	13.3	0.6	23	5.4	0.1	3.0	4	0	0	4	4	4	0	Phage	integrase	SAM-like	domain
HxlR	PF01638.17	gi|345007007|ref|YP_004809859.1|	-	0.0038	17.0	0.0	0.0068	16.2	0.0	1.4	1	1	0	1	1	1	1	HxlR-like	helix-turn-helix
HTH_5	PF01022.20	gi|345007007|ref|YP_004809859.1|	-	0.0084	16.0	0.0	0.029	14.2	0.0	1.8	2	0	0	2	2	2	1	Bacterial	regulatory	protein,	arsR	family
ATPase_2	PF01637.18	gi|345007008|ref|YP_004809860.1|	-	2.2e-23	83.4	0.0	2.6e-22	79.9	0.0	2.1	1	1	0	1	1	1	1	ATPase	domain	predominantly	from	Archaea
DUF234	PF03008.14	gi|345007008|ref|YP_004809860.1|	-	3.4e-18	65.9	0.0	6.6e-18	65.0	0.0	1.4	1	0	0	1	1	1	1	Archaea	bacterial	proteins	of	unknown	function
AAA_14	PF13173.6	gi|345007008|ref|YP_004809860.1|	-	1.1e-06	28.7	0.0	2e-06	27.9	0.0	1.5	1	0	0	1	1	1	1	AAA	domain
AAA_16	PF13191.6	gi|345007008|ref|YP_004809860.1|	-	1.2e-05	25.8	0.3	0.00012	22.5	0.3	2.5	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_22	PF13401.6	gi|345007008|ref|YP_004809860.1|	-	5.4e-05	23.5	0.0	0.00012	22.3	0.0	1.5	1	0	0	1	1	1	1	AAA	domain
MarR_2	PF12802.7	gi|345007008|ref|YP_004809860.1|	-	0.0018	18.1	0.0	0.0044	16.9	0.0	1.6	1	0	0	1	1	1	1	MarR	family
HTH_24	PF13412.6	gi|345007008|ref|YP_004809860.1|	-	0.004	16.7	0.1	0.0077	15.8	0.1	1.5	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
TrmB	PF01978.19	gi|345007008|ref|YP_004809860.1|	-	0.0075	16.1	0.0	0.018	14.9	0.0	1.6	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_IclR	PF09339.10	gi|345007008|ref|YP_004809860.1|	-	0.03	14.1	0.0	0.063	13.1	0.0	1.5	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
HTH_5	PF01022.20	gi|345007008|ref|YP_004809860.1|	-	0.077	12.9	0.0	0.15	12.0	0.0	1.4	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
HTH_27	PF13463.6	gi|345007008|ref|YP_004809860.1|	-	0.29	11.6	1.1	2.1	8.9	0.1	2.4	2	0	0	2	2	2	0	Winged	helix	DNA-binding	domain
GCIP	PF13324.6	gi|345007009|ref|YP_004809861.1|	-	0.011	15.4	0.1	0.014	15.0	0.1	1.3	1	1	0	1	1	1	0	Grap2	and	cyclin-D-interacting
Fe_dep_repress	PF01325.19	gi|345007009|ref|YP_004809861.1|	-	0.096	12.9	0.0	0.16	12.2	0.0	1.3	1	0	0	1	1	1	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
DUF3826	PF12875.7	gi|345007009|ref|YP_004809861.1|	-	0.11	12.6	0.1	0.23	11.6	0.1	1.6	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF3826)
Phage_integrase	PF00589.22	gi|345007013|ref|YP_004809865.1|	-	2.6e-23	82.7	0.0	3.3e-23	82.4	0.0	1.0	1	0	0	1	1	1	1	Phage	integrase	family
DUF4696	PF15767.5	gi|345007013|ref|YP_004809865.1|	-	0.075	11.6	0.0	0.093	11.3	0.0	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4696)
DDE_Tnp_1	PF01609.21	gi|345007014|ref|YP_004809866.1|	-	0.031	13.9	0.1	0.085	12.5	0.1	1.7	1	1	0	1	1	1	0	Transposase	DDE	domain
DDE_Tnp_IS66	PF03050.14	gi|345007015|ref|YP_004809867.1|	-	7e-49	166.8	0.2	7e-49	166.8	0.2	2.0	2	1	0	2	2	2	1	Transposase	IS66	family
ZapB	PF06005.12	gi|345007015|ref|YP_004809867.1|	-	3e-09	37.2	6.3	9.7e-09	35.6	6.3	1.9	1	0	0	1	1	1	1	Cell	division	protein	ZapB
zf-IS66	PF13005.7	gi|345007015|ref|YP_004809867.1|	-	1.9e-05	25.0	4.3	4.5e-05	23.8	4.3	1.7	1	0	0	1	1	1	1	zinc-finger	binding	domain	of	transposase	IS66
YabA	PF06156.13	gi|345007015|ref|YP_004809867.1|	-	4.3e-05	24.1	4.2	0.00014	22.4	4.2	1.8	1	0	0	1	1	1	1	Initiation	control	protein	YabA
CASP_C	PF08172.12	gi|345007015|ref|YP_004809867.1|	-	0.00024	20.6	1.9	0.00039	19.9	1.9	1.2	1	0	0	1	1	1	1	CASP	C	terminal
JIP_LZII	PF16471.5	gi|345007015|ref|YP_004809867.1|	-	0.00056	20.0	3.4	0.0012	19.0	3.4	1.6	1	0	0	1	1	1	1	JNK-interacting	protein	leucine	zipper	II
bZIP_1	PF00170.21	gi|345007015|ref|YP_004809867.1|	-	0.0018	18.3	7.8	0.004	17.2	7.8	1.6	1	0	0	1	1	1	1	bZIP	transcription	factor
DDE_Tnp_IS240	PF13610.6	gi|345007015|ref|YP_004809867.1|	-	0.003	17.8	0.8	0.013	15.7	0.0	2.3	2	1	0	2	2	2	1	DDE	domain
SlyX	PF04102.12	gi|345007015|ref|YP_004809867.1|	-	0.0054	17.3	5.4	0.014	16.0	5.4	1.7	1	0	0	1	1	1	1	SlyX
NUDE_C	PF04880.13	gi|345007015|ref|YP_004809867.1|	-	0.013	16.0	4.4	0.034	14.6	4.4	1.6	1	0	0	1	1	1	0	NUDE	protein,	C-terminal	conserved	region
CCDC106	PF15794.5	gi|345007015|ref|YP_004809867.1|	-	0.02	14.6	3.6	0.042	13.6	3.6	1.4	1	0	0	1	1	1	0	Coiled-coil	domain-containing	protein	106
Cnn_1N	PF07989.11	gi|345007015|ref|YP_004809867.1|	-	0.026	14.7	6.4	0.056	13.6	6.4	1.5	1	0	0	1	1	1	0	Centrosomin	N-terminal	motif	1
SKA1	PF07160.12	gi|345007015|ref|YP_004809867.1|	-	0.029	14.2	0.9	0.057	13.3	0.9	1.4	1	0	0	1	1	1	0	Spindle	and	kinetochore-associated	protein	1
CENP-H	PF05837.12	gi|345007015|ref|YP_004809867.1|	-	0.03	14.7	3.3	0.072	13.5	3.3	1.6	1	0	0	1	1	1	0	Centromere	protein	H	(CENP-H)
DUF4201	PF13870.6	gi|345007015|ref|YP_004809867.1|	-	0.039	13.7	3.6	0.078	12.7	3.6	1.5	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4201)
RP-C_C	PF11800.8	gi|345007015|ref|YP_004809867.1|	-	0.04	14.0	1.2	0.082	13.0	1.2	1.5	1	0	0	1	1	1	0	Replication	protein	C	C-terminal	region
V_ATPase_I	PF01496.19	gi|345007015|ref|YP_004809867.1|	-	0.049	11.6	2.1	0.07	11.1	2.1	1.1	1	0	0	1	1	1	0	V-type	ATPase	116kDa	subunit	family
HSBP1	PF06825.12	gi|345007015|ref|YP_004809867.1|	-	0.06	13.2	0.3	0.11	12.3	0.3	1.4	1	0	0	1	1	1	0	Heat	shock	factor	binding	protein	1
XhlA	PF10779.9	gi|345007015|ref|YP_004809867.1|	-	0.067	13.4	5.8	0.18	12.0	5.8	1.7	1	0	0	1	1	1	0	Haemolysin	XhlA
FlaC_arch	PF05377.11	gi|345007015|ref|YP_004809867.1|	-	0.072	13.5	3.1	0.17	12.3	3.1	1.6	1	0	0	1	1	1	0	Flagella	accessory	protein	C	(FlaC)
TSC22	PF01166.18	gi|345007015|ref|YP_004809867.1|	-	0.087	13.1	14.9	0.11	12.8	7.5	3.3	2	1	1	3	3	3	0	TSC-22/dip/bun	family
HOOK	PF05622.12	gi|345007015|ref|YP_004809867.1|	-	0.093	10.9	3.9	0.13	10.3	3.9	1.1	1	0	0	1	1	1	0	HOOK	protein
GAS	PF13851.6	gi|345007015|ref|YP_004809867.1|	-	0.12	11.8	6.2	0.21	10.9	6.2	1.3	1	0	0	1	1	1	0	Growth-arrest	specific	micro-tubule	binding
DUF4988	PF16378.5	gi|345007015|ref|YP_004809867.1|	-	0.14	11.8	3.3	0.89	9.2	1.5	2.2	2	0	0	2	2	2	0	Domain	of	unknown	function
HALZ	PF02183.18	gi|345007015|ref|YP_004809867.1|	-	0.2	11.9	7.1	0.26	11.6	6.1	1.8	2	0	0	2	2	1	0	Homeobox	associated	leucine	zipper
EMP24_GP25L	PF01105.24	gi|345007015|ref|YP_004809867.1|	-	0.24	11.3	5.2	4.1	7.3	4.2	2.2	2	0	0	2	2	2	0	emp24/gp25L/p24	family/GOLD
Synaptobrevin	PF00957.21	gi|345007015|ref|YP_004809867.1|	-	0.25	11.1	1.7	0.43	10.4	1.7	1.3	1	0	0	1	1	1	0	Synaptobrevin
Spc24	PF08286.11	gi|345007015|ref|YP_004809867.1|	-	0.27	11.5	3.5	0.57	10.5	3.5	1.5	1	0	0	1	1	1	0	Spc24	subunit	of	Ndc80
DivIC	PF04977.15	gi|345007015|ref|YP_004809867.1|	-	0.31	10.8	8.4	0.77	9.6	8.0	1.9	1	1	0	1	1	1	0	Septum	formation	initiator
SpoVR	PF04293.13	gi|345007015|ref|YP_004809867.1|	-	0.35	9.5	4.7	0.55	8.9	4.7	1.2	1	0	0	1	1	1	0	SpoVR	like	protein
Shugoshin_N	PF07558.11	gi|345007015|ref|YP_004809867.1|	-	0.62	10.0	6.8	0.15	11.9	2.5	2.0	1	1	1	2	2	2	0	Shugoshin	N-terminal	coiled-coil	region
Jnk-SapK_ap_N	PF09744.9	gi|345007015|ref|YP_004809867.1|	-	0.68	10.1	7.3	1.9	8.7	7.3	1.7	1	0	0	1	1	1	0	JNK_SAPK-associated	protein-1
Chibby	PF14645.6	gi|345007015|ref|YP_004809867.1|	-	0.7	10.3	4.1	1.7	9.1	4.1	1.6	1	0	0	1	1	1	0	Chibby	family
APG6_N	PF17675.1	gi|345007015|ref|YP_004809867.1|	-	0.77	10.3	9.2	1.5	9.3	9.2	1.5	1	0	0	1	1	1	0	Apg6	coiled-coil	region
ADIP	PF11559.8	gi|345007015|ref|YP_004809867.1|	-	0.78	9.8	7.1	1.7	8.7	7.1	1.5	1	0	0	1	1	1	0	Afadin-	and	alpha	-actinin-Binding
Prefoldin_2	PF01920.20	gi|345007015|ref|YP_004809867.1|	-	0.92	9.5	8.3	1.8	8.6	8.3	1.4	1	0	0	1	1	1	0	Prefoldin	subunit
bZIP_2	PF07716.15	gi|345007015|ref|YP_004809867.1|	-	1.2	9.3	14.7	8.7	6.5	6.5	2.6	1	1	1	2	2	2	0	Basic	region	leucine	zipper
GIT_CC	PF16559.5	gi|345007015|ref|YP_004809867.1|	-	1.2	9.0	5.9	2.4	8.1	5.9	1.5	1	0	0	1	1	1	0	GIT	coiled-coil	Rho	guanine	nucleotide	exchange	factor
GrpE	PF01025.19	gi|345007015|ref|YP_004809867.1|	-	1.2	8.8	5.5	2.3	7.9	5.5	1.4	1	0	0	1	1	1	0	GrpE
DUF2205	PF10224.9	gi|345007015|ref|YP_004809867.1|	-	1.5	8.9	5.6	3.6	7.7	5.6	1.6	1	0	0	1	1	1	0	Short	coiled-coil	protein
Astro_capsid_p	PF12226.8	gi|345007015|ref|YP_004809867.1|	-	1.5	7.9	4.8	2.3	7.3	4.8	1.2	1	0	0	1	1	1	0	Turkey	astrovirus	capsid	protein
DUF3552	PF12072.8	gi|345007015|ref|YP_004809867.1|	-	2.1	7.7	7.5	3.7	6.9	7.5	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3552)
DUF3450	PF11932.8	gi|345007015|ref|YP_004809867.1|	-	2.3	7.4	8.2	0.46	9.8	3.0	2.3	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF3450)
NRBF2	PF08961.10	gi|345007015|ref|YP_004809867.1|	-	2.4	7.7	14.9	0.031	13.9	7.5	1.6	2	0	0	2	2	1	0	Nuclear	receptor-binding	factor	2,	autophagy	regulator
UPF0242	PF06785.11	gi|345007015|ref|YP_004809867.1|	-	7.3	6.6	7.8	2.4	8.2	5.0	1.6	2	0	0	2	2	1	0	Uncharacterised	protein	family	(UPF0242)	N-terminus
Helicase_C	PF00271.31	gi|345007016|ref|YP_004809868.1|	-	3.5e-17	62.7	0.5	9.7e-15	54.9	0.0	3.7	3	1	1	4	4	4	1	Helicase	conserved	C-terminal	domain
PLDc_2	PF13091.6	gi|345007016|ref|YP_004809868.1|	-	2.7e-14	53.2	0.0	2.2e-13	50.2	0.0	2.4	2	0	0	2	2	2	1	PLD-like	domain
SNF2_N	PF00176.23	gi|345007016|ref|YP_004809868.1|	-	4.1e-12	45.5	0.0	1.3e-07	30.7	0.1	2.4	2	0	0	2	2	2	2	SNF2	family	N-terminal	domain
ResIII	PF04851.15	gi|345007016|ref|YP_004809868.1|	-	2.8e-10	40.5	0.0	2e-09	37.7	0.0	2.5	2	1	0	2	2	2	1	Type	III	restriction	enzyme,	res	subunit
DUF2075	PF09848.9	gi|345007016|ref|YP_004809868.1|	-	0.00021	20.6	0.2	0.00098	18.5	0.0	2.1	2	0	0	2	2	2	1	Uncharacterized	conserved	protein	(DUF2075)
SWI2_SNF2	PF18766.1	gi|345007016|ref|YP_004809868.1|	-	0.00047	19.9	0.3	0.0015	18.2	0.3	1.8	1	1	0	1	1	1	1	SWI2/SNF2	ATPase
AAA_22	PF13401.6	gi|345007016|ref|YP_004809868.1|	-	0.09	13.1	0.1	1.1	9.6	0.0	3.0	2	1	1	3	3	3	0	AAA	domain
Osmo_CC	PF08946.10	gi|345007017|ref|YP_004809869.1|	-	0.094	13.0	0.7	0.17	12.1	0.7	1.4	1	0	0	1	1	1	0	Osmosensory	transporter	coiled	coil
Img2	PF05046.14	gi|345007017|ref|YP_004809869.1|	-	0.13	12.6	0.2	0.18	12.1	0.2	1.3	1	1	0	1	1	1	0	Mitochondrial	large	subunit	ribosomal	protein	(Img2)
DZR	PF12773.7	gi|345007018|ref|YP_004809870.1|	-	0.026	14.5	0.1	0.051	13.6	0.1	1.4	1	0	0	1	1	1	0	Double	zinc	ribbon
RNase_H_2	PF13482.6	gi|345007021|ref|YP_004809873.1|	-	0.0012	18.9	0.0	0.41	10.6	0.0	2.5	2	1	0	2	2	2	2	RNase_H	superfamily
DUF5126	PF17166.4	gi|345007023|ref|YP_004809875.1|	-	0.038	13.8	0.1	0.071	13.0	0.1	1.5	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF5126)
DDE_Tnp_1	PF01609.21	gi|345007024|ref|YP_004809876.1|	-	0.031	13.9	0.1	0.085	12.5	0.1	1.7	1	1	0	1	1	1	0	Transposase	DDE	domain
Glyco_hyd_101C	PF17451.2	gi|345007026|ref|YP_004809878.1|	-	0.032	14.5	0.2	0.05	13.9	0.2	1.3	1	0	0	1	1	1	0	Glycosyl	hydrolase	101	beta	sandwich	domain
LIM_bind	PF01803.16	gi|345007026|ref|YP_004809878.1|	-	0.17	11.4	0.0	0.22	11.0	0.0	1.1	1	0	0	1	1	1	0	LIM-domain	binding	protein
DDE_Tnp_1	PF01609.21	gi|345007030|ref|YP_004809882.1|	-	0.031	13.9	0.1	0.085	12.5	0.1	1.7	1	1	0	1	1	1	0	Transposase	DDE	domain
SlyX	PF04102.12	gi|345007031|ref|YP_004809883.1|	-	0.024	15.2	1.0	4.8	7.9	0.0	2.4	2	1	0	2	2	2	0	SlyX
TSNAXIP1_N	PF15739.5	gi|345007031|ref|YP_004809883.1|	-	0.14	12.5	0.6	10	6.5	0.0	2.1	2	0	0	2	2	2	0	Translin-associated	factor	X-interacting	N-terminus
PDDEXK_1	PF12705.7	gi|345007032|ref|YP_004809884.1|	-	1e-11	45.2	0.0	3.8e-11	43.4	0.0	2.0	1	1	0	1	1	1	1	PD-(D/E)XK	nuclease	superfamily
UvrD-helicase	PF00580.21	gi|345007033|ref|YP_004809885.1|	-	5.6e-51	173.9	0.2	2.1e-50	172.1	0.2	1.9	1	1	0	1	1	1	1	UvrD/REP	helicase	N-terminal	domain
UvrD_C	PF13361.6	gi|345007033|ref|YP_004809885.1|	-	1.7e-27	96.7	0.0	3.4e-17	62.9	0.0	2.2	2	0	0	2	2	2	2	UvrD-like	helicase	C-terminal	domain
AAA_19	PF13245.6	gi|345007033|ref|YP_004809885.1|	-	1.9e-26	93.2	0.0	1.4e-25	90.4	0.0	2.2	1	1	0	1	1	1	1	AAA	domain
UvrD_C_2	PF13538.6	gi|345007033|ref|YP_004809885.1|	-	1.9e-09	37.2	0.2	0.00034	20.4	0.1	2.8	2	0	0	2	2	2	2	UvrD-like	helicase	C-terminal	domain
AAA_30	PF13604.6	gi|345007033|ref|YP_004809885.1|	-	1.8e-07	31.1	0.0	3.5e-06	26.9	0.0	2.4	2	0	0	2	2	2	1	AAA	domain
PDDEXK_1	PF12705.7	gi|345007033|ref|YP_004809885.1|	-	1.6e-05	24.9	1.1	0.0001	22.3	0.1	2.5	2	1	0	2	2	2	1	PD-(D/E)XK	nuclease	superfamily
AAA_11	PF13086.6	gi|345007033|ref|YP_004809885.1|	-	0.00013	21.9	0.0	0.1	12.4	0.0	2.4	2	0	0	2	2	2	2	AAA	domain
AAA_12	PF13087.6	gi|345007033|ref|YP_004809885.1|	-	0.00078	19.1	0.0	0.087	12.4	0.0	2.7	2	1	0	2	2	2	1	AAA	domain
Viral_helicase1	PF01443.18	gi|345007033|ref|YP_004809885.1|	-	0.006	16.4	1.2	11	5.7	0.1	3.7	4	0	0	4	4	4	1	Viral	(Superfamily	1)	RNA	helicase
PhoH	PF02562.16	gi|345007033|ref|YP_004809885.1|	-	0.053	13.0	0.1	8.7	5.7	0.0	2.4	2	0	0	2	2	2	0	PhoH-like	protein
DUF1819	PF08849.11	gi|345007035|ref|YP_004809887.1|	-	2.8e-06	27.3	0.0	3.6e-06	26.9	0.0	1.2	1	0	0	1	1	1	1	Putative	inner	membrane	protein	(DUF1819)
AAA_16	PF13191.6	gi|345007036|ref|YP_004809888.1|	-	0.031	14.7	0.4	0.66	10.3	0.0	3.5	3	1	0	3	3	3	0	AAA	ATPase	domain
ABC_tran	PF00005.27	gi|345007036|ref|YP_004809888.1|	-	0.066	13.7	0.0	0.35	11.4	0.0	2.2	2	0	0	2	2	2	0	ABC	transporter
DUF1788	PF08747.11	gi|345007037|ref|YP_004809889.1|	-	4.7e-13	49.2	0.0	6.2e-13	48.8	0.0	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1788)
Tudor_3	PF18115.1	gi|345007037|ref|YP_004809889.1|	-	0.058	13.2	0.1	0.14	12.0	0.1	1.6	1	0	0	1	1	1	0	DNA	repair	protein	Crb2	Tudor	domain
Bac_DnaA	PF00308.18	gi|345007038|ref|YP_004809890.1|	-	0.026	14.4	0.1	0.073	12.9	0.0	1.8	2	0	0	2	2	2	0	Bacterial	dnaA	protein
PIN	PF01850.21	gi|345007039|ref|YP_004809891.1|	-	4.9e-16	59.3	0.6	5.5e-16	59.2	0.6	1.0	1	0	0	1	1	1	1	PIN	domain
TPR_14	PF13428.6	gi|345007039|ref|YP_004809891.1|	-	0.22	12.4	1.6	80	4.5	0.1	3.4	2	1	1	3	3	3	0	Tetratricopeptide	repeat
MazE_antitoxin	PF04014.18	gi|345007040|ref|YP_004809892.1|	-	0.00031	20.6	0.2	0.00051	19.9	0.2	1.3	1	0	0	1	1	1	1	Antidote-toxin	recognition	MazE,	bacterial	antitoxin
PrlF_antitoxin	PF15937.5	gi|345007040|ref|YP_004809892.1|	-	0.0026	18.1	0.0	0.0034	17.8	0.0	1.2	1	0	0	1	1	1	1	prlF	antitoxin	for	toxin	YhaV_toxin
zf-HC2	PF13490.6	gi|345007040|ref|YP_004809892.1|	-	0.073	13.3	0.2	0.13	12.5	0.2	1.5	1	0	0	1	1	1	0	Putative	zinc-finger
Inhibitor_I53	PF11714.8	gi|345007040|ref|YP_004809892.1|	-	0.16	12.2	0.6	0.26	11.5	0.5	1.4	1	1	0	1	1	1	0	Thrombin	inhibitor	Madanin
N6_Mtase	PF02384.16	gi|345007041|ref|YP_004809893.1|	-	3.9e-07	29.7	0.0	0.00078	18.8	0.0	3.2	2	1	1	3	3	3	2	N-6	DNA	Methylase
UPF0020	PF01170.18	gi|345007041|ref|YP_004809893.1|	-	0.012	15.4	0.0	1.3	8.7	0.0	2.6	2	0	0	2	2	2	0	Putative	RNA	methylase	family	UPF0020
DUF496	PF04363.12	gi|345007041|ref|YP_004809893.1|	-	0.03	14.3	0.1	10	6.2	0.0	2.8	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF496)
Methyltransf_31	PF13847.6	gi|345007041|ref|YP_004809893.1|	-	0.12	12.1	0.0	0.5	10.2	0.0	2.1	2	0	0	2	2	2	0	Methyltransferase	domain
2-Hacid_dh	PF00389.30	gi|345007042|ref|YP_004809894.1|	-	0.094	12.4	0.0	0.15	11.8	0.0	1.5	1	1	0	1	1	1	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	catalytic	domain
PglZ	PF08665.12	gi|345007043|ref|YP_004809895.1|	-	3.3e-12	46.8	0.0	6.2e-12	46.0	0.0	1.5	1	0	0	1	1	1	1	PglZ	domain
Helicase_C	PF00271.31	gi|345007044|ref|YP_004809896.1|	-	4.5e-24	84.9	0.0	1.2e-23	83.5	0.0	1.8	1	0	0	1	1	1	1	Helicase	conserved	C-terminal	domain
SNF2_N	PF00176.23	gi|345007044|ref|YP_004809896.1|	-	9e-18	64.1	0.0	6.7e-16	57.9	0.0	2.3	1	1	0	1	1	1	1	SNF2	family	N-terminal	domain
ResIII	PF04851.15	gi|345007044|ref|YP_004809896.1|	-	8.5e-14	51.9	0.0	3.1e-13	50.1	0.0	2.0	1	0	0	1	1	1	1	Type	III	restriction	enzyme,	res	subunit
DEAD	PF00270.29	gi|345007044|ref|YP_004809896.1|	-	6.6e-06	26.0	0.0	1.8e-05	24.6	0.0	1.8	1	0	0	1	1	1	1	DEAD/DEAH	box	helicase
RapA_C	PF12137.8	gi|345007044|ref|YP_004809896.1|	-	7.4e-05	21.9	0.1	7.4e-05	21.9	0.1	2.8	2	1	0	2	2	2	1	RNA	polymerase	recycling	family	C-terminal
Helicase_C_4	PF13871.6	gi|345007044|ref|YP_004809896.1|	-	0.00046	20.0	0.1	0.05	13.3	0.0	2.5	2	0	0	2	2	2	1	C-terminal	domain	on	Strawberry	notch	homologue
DUF2075	PF09848.9	gi|345007044|ref|YP_004809896.1|	-	0.012	14.8	1.3	0.062	12.5	0.1	2.6	3	0	0	3	3	3	0	Uncharacterized	conserved	protein	(DUF2075)
AAA_34	PF13872.6	gi|345007044|ref|YP_004809896.1|	-	0.017	14.0	0.4	0.13	11.2	0.4	2.1	1	1	0	1	1	1	0	P-loop	containing	NTP	hydrolase	pore-1
DUF4611	PF15387.6	gi|345007044|ref|YP_004809896.1|	-	1.3	9.3	5.8	0.58	10.4	0.4	2.9	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4611)
Herpes_UL25	PF01499.16	gi|345007044|ref|YP_004809896.1|	-	1.6	7.2	5.6	2.8	6.4	5.6	1.3	1	0	0	1	1	1	0	Herpesvirus	UL25	family
DUF790	PF05626.11	gi|345007045|ref|YP_004809897.1|	-	4.2e-138	460.3	0.0	4.8e-138	460.1	0.0	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF790)
DUF3268	PF11672.8	gi|345007045|ref|YP_004809897.1|	-	0.18	12.2	0.0	0.33	11.3	0.0	1.5	1	0	0	1	1	1	0	zinc-finger-containing	domain
ERCC3_RAD25_C	PF16203.5	gi|345007046|ref|YP_004809898.1|	-	2.7e-22	79.2	0.2	4.1e-22	78.6	0.2	1.2	1	0	0	1	1	1	1	ERCC3/RAD25/XPB	C-terminal	helicase
ResIII	PF04851.15	gi|345007046|ref|YP_004809898.1|	-	4e-22	79.0	0.0	1.6e-21	77.1	0.0	1.9	2	0	0	2	2	2	1	Type	III	restriction	enzyme,	res	subunit
Helicase_C	PF00271.31	gi|345007046|ref|YP_004809898.1|	-	2e-17	63.5	0.1	2e-17	63.5	0.1	1.8	2	0	0	2	2	2	1	Helicase	conserved	C-terminal	domain
XPB_DRD	PF18458.1	gi|345007046|ref|YP_004809898.1|	-	3.3e-13	49.3	1.3	1.5e-12	47.2	1.3	2.2	1	0	0	1	1	1	1	Xeroderma	pigmentosum	group	B	helicase	damage	recognition	domain
DEAD	PF00270.29	gi|345007046|ref|YP_004809898.1|	-	4.4e-08	33.1	0.0	1e-07	31.9	0.0	1.7	1	0	0	1	1	1	1	DEAD/DEAH	box	helicase
IstB_IS21	PF01695.17	gi|345007046|ref|YP_004809898.1|	-	0.034	13.9	0.0	0.52	10.0	0.0	2.6	2	0	0	2	2	2	0	IstB-like	ATP	binding	protein
Helicase_C_2	PF13307.6	gi|345007046|ref|YP_004809898.1|	-	0.064	13.4	1.0	2.8	8.1	0.0	3.0	1	1	2	3	3	3	0	Helicase	C-terminal	domain
PRiA4_ORF3	PF07929.11	gi|345007047|ref|YP_004809899.1|	-	8.9e-18	64.6	0.0	1.3e-17	64.1	0.0	1.2	1	0	0	1	1	1	1	Plasmid	pRiA4b	ORF-3-like	protein
C1_1	PF00130.22	gi|345007049|ref|YP_004809901.1|	-	0.0022	17.9	2.9	0.0022	17.9	2.9	2.1	1	1	1	2	2	2	1	Phorbol	esters/diacylglycerol	binding	domain	(C1	domain)
Ribosomal_L40e	PF01020.17	gi|345007049|ref|YP_004809901.1|	-	0.0024	17.7	6.1	0.004	17.0	6.1	1.4	1	0	0	1	1	1	1	Ribosomal	L40e	family
zf-C3HC4_3	PF13920.6	gi|345007049|ref|YP_004809901.1|	-	0.0066	16.3	6.8	0.0066	16.3	6.8	1.6	1	1	1	2	2	2	1	Zinc	finger,	C3HC4	type	(RING	finger)
zf-HIT	PF04438.16	gi|345007049|ref|YP_004809901.1|	-	0.007	16.2	11.9	2.5	8.1	8.0	3.1	2	1	0	2	2	2	2	HIT	zinc	finger
zf-CRD	PF17979.1	gi|345007049|ref|YP_004809901.1|	-	0.022	14.9	5.2	0.026	14.6	5.2	1.1	1	0	0	1	1	1	0	Cysteine	rich	domain	with	multizinc	binding	regions
zinc-ribbons_6	PF07191.12	gi|345007049|ref|YP_004809901.1|	-	0.25	11.4	7.8	1.3	9.1	1.9	2.2	1	1	1	2	2	2	0	zinc-ribbons
Zn-ribbon_8	PF09723.10	gi|345007049|ref|YP_004809901.1|	-	0.61	10.3	15.9	14	5.9	10.8	3.2	2	1	0	2	2	2	0	Zinc	ribbon	domain
zf-ACC	PF17848.1	gi|345007049|ref|YP_004809901.1|	-	0.77	9.9	0.1	0.77	9.9	0.1	3.9	3	1	0	3	3	3	0	Acetyl-coA	carboxylase	zinc	finger	domain
zf_C2H2_10	PF18414.1	gi|345007049|ref|YP_004809901.1|	-	1.2	8.7	8.4	1.7	8.3	0.8	2.6	2	1	0	2	2	2	0	C2H2	type	zinc-finger
HypA	PF01155.19	gi|345007049|ref|YP_004809901.1|	-	1.4	8.9	8.4	10	6.2	5.9	2.0	1	1	1	2	2	2	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
zf_UBZ	PF18439.1	gi|345007049|ref|YP_004809901.1|	-	1.9	8.1	13.5	7	6.3	0.3	3.8	3	1	1	4	4	4	0	Ubiquitin-Binding	Zinc	Finger
FYVE	PF01363.21	gi|345007049|ref|YP_004809901.1|	-	5.8	7.1	14.4	1.3e+02	2.8	14.5	2.3	1	1	0	1	1	1	0	FYVE	zinc	finger
zf-C2H2_4	PF13894.6	gi|345007049|ref|YP_004809901.1|	-	6.2	7.9	14.7	2.6	9.1	0.5	3.7	2	1	1	3	3	3	0	C2H2-type	zinc	finger
SATase_N	PF06426.14	gi|345007050|ref|YP_004809902.1|	-	0.03	14.7	0.1	0.031	14.7	0.1	1.1	1	0	0	1	1	1	0	Serine	acetyltransferase,	N-terminal
TrbC	PF04956.13	gi|345007051|ref|YP_004809903.1|	-	6.8e-05	23.0	0.8	9.7e-05	22.5	0.8	1.2	1	0	0	1	1	1	1	TrbC/VIRB2	family
DUF2304	PF10066.9	gi|345007051|ref|YP_004809903.1|	-	0.07	13.4	0.0	3.7	7.8	0.0	2.2	2	1	0	2	2	2	0	Uncharacterized	conserved	protein	(DUF2304)
DUF4624	PF15417.6	gi|345007052|ref|YP_004809904.1|	-	0.24	11.2	1.9	0.35	10.7	0.2	2.1	2	1	1	3	3	3	0	Domain	of	unknown	function	(DUF4624)
FlgD_ig	PF13860.6	gi|345007053|ref|YP_004809905.1|	-	0.0011	18.8	0.3	0.0023	17.7	0.3	1.6	1	0	0	1	1	1	1	FlgD	Ig-like	domain
DUF3558	PF12079.8	gi|345007053|ref|YP_004809905.1|	-	0.98	9.4	7.8	0.56	10.2	2.7	2.3	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3558)
DUF883	PF05957.13	gi|345007054|ref|YP_004809906.1|	-	0.16	12.6	3.9	0.43	11.2	3.9	1.6	1	0	0	1	1	1	0	Bacterial	protein	of	unknown	function	(DUF883)
TraG-D_C	PF12696.7	gi|345007055|ref|YP_004809907.1|	-	0.00018	21.5	0.0	0.00038	20.4	0.0	1.5	1	0	0	1	1	1	1	TraM	recognition	site	of	TraD	and	TraG
AAA_22	PF13401.6	gi|345007055|ref|YP_004809907.1|	-	0.0024	18.1	0.3	0.15	12.4	0.2	2.8	2	0	0	2	2	2	1	AAA	domain
AAA_16	PF13191.6	gi|345007055|ref|YP_004809907.1|	-	0.0045	17.4	1.0	0.25	11.7	0.2	3.3	3	0	0	3	3	3	1	AAA	ATPase	domain
Zot	PF05707.12	gi|345007055|ref|YP_004809907.1|	-	0.0087	15.7	0.1	0.099	12.3	0.1	2.2	2	0	0	2	2	2	1	Zonular	occludens	toxin	(Zot)
OpcA_G6PD_assem	PF10128.9	gi|345007055|ref|YP_004809907.1|	-	0.022	14.3	0.3	0.086	12.3	0.0	2.0	2	0	0	2	2	2	0	Glucose-6-phosphate	dehydrogenase	subunit
DUF3487	PF11990.8	gi|345007055|ref|YP_004809907.1|	-	0.055	13.4	0.4	0.11	12.4	0.4	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3487)
TAT_ubiq	PF07706.12	gi|345007056|ref|YP_004809908.1|	-	0.12	12.6	0.0	0.23	11.7	0.0	1.4	1	0	0	1	1	1	0	Aminotransferase	ubiquitination	site
Rsa3	PF14615.6	gi|345007056|ref|YP_004809908.1|	-	0.16	11.6	0.0	0.33	10.5	0.0	1.6	1	0	0	1	1	1	0	Ribosome-assembly	protein	3
TrwB_AAD_bind	PF10412.9	gi|345007057|ref|YP_004809909.1|	-	5.5e-09	35.4	0.0	5.2e-05	22.3	0.0	2.2	2	0	0	2	2	2	2	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
TraG-D_C	PF12696.7	gi|345007057|ref|YP_004809909.1|	-	2.1e-06	27.7	0.0	4.8e-06	26.6	0.0	1.6	1	0	0	1	1	1	1	TraM	recognition	site	of	TraD	and	TraG
T4SS-DNA_transf	PF02534.14	gi|345007057|ref|YP_004809909.1|	-	3.1e-05	23.0	0.0	0.0011	17.9	0.1	2.1	2	0	0	2	2	2	1	Type	IV	secretory	system	Conjugative	DNA	transfer
FtsK_SpoIIIE	PF01580.18	gi|345007057|ref|YP_004809909.1|	-	0.012	15.0	0.0	0.59	9.4	0.0	2.5	2	0	0	2	2	2	0	FtsK/SpoIIIE	family
HHH_6	PF14579.6	gi|345007057|ref|YP_004809909.1|	-	0.021	15.1	0.0	0.049	13.9	0.0	1.6	1	0	0	1	1	1	0	Helix-hairpin-helix	motif
DUF87	PF01935.17	gi|345007057|ref|YP_004809909.1|	-	0.034	14.2	0.1	0.17	12.0	0.0	2.3	3	1	0	3	3	3	0	Helicase	HerA,	central	domain
NACHT	PF05729.12	gi|345007057|ref|YP_004809909.1|	-	0.059	13.3	0.0	0.24	11.3	0.0	2.0	2	0	0	2	2	2	0	NACHT	domain
Pox_D5	PF03288.16	gi|345007057|ref|YP_004809909.1|	-	0.075	13.5	0.0	0.15	12.5	0.0	1.5	1	0	0	1	1	1	0	Poxvirus	D5	protein-like
AAA_22	PF13401.6	gi|345007057|ref|YP_004809909.1|	-	0.11	12.8	0.1	4.2	7.6	0.0	2.8	2	0	0	2	2	2	0	AAA	domain
ATG16	PF08614.11	gi|345007058|ref|YP_004809910.1|	-	0.00016	22.0	2.2	0.00016	22.0	2.2	1.8	2	0	0	2	2	2	1	Autophagy	protein	16	(ATG16)
HAP1_N	PF04849.13	gi|345007058|ref|YP_004809910.1|	-	0.0042	16.3	2.4	0.0073	15.6	2.4	1.3	1	0	0	1	1	1	1	HAP1	N-terminal	conserved	region
DivIC	PF04977.15	gi|345007058|ref|YP_004809910.1|	-	0.0092	15.7	1.1	0.025	14.3	1.1	1.7	1	0	0	1	1	1	1	Septum	formation	initiator
SlyX	PF04102.12	gi|345007058|ref|YP_004809910.1|	-	0.024	15.2	1.7	0.024	15.2	1.7	2.6	3	0	0	3	3	3	0	SlyX
DUF1192	PF06698.11	gi|345007058|ref|YP_004809910.1|	-	0.031	14.3	2.3	0.081	13.0	2.3	1.7	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1192)
DUF1664	PF07889.12	gi|345007058|ref|YP_004809910.1|	-	0.036	14.1	1.2	0.063	13.3	0.5	1.7	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1664)
DUF2205	PF10224.9	gi|345007058|ref|YP_004809910.1|	-	0.061	13.3	0.5	0.12	12.4	0.5	1.4	1	0	0	1	1	1	0	Short	coiled-coil	protein
Lebercilin	PF15619.6	gi|345007058|ref|YP_004809910.1|	-	0.1	12.2	3.3	0.17	11.5	3.3	1.3	1	0	0	1	1	1	0	Ciliary	protein	causing	Leber	congenital	amaurosis	disease
ZapB	PF06005.12	gi|345007058|ref|YP_004809910.1|	-	0.11	12.9	4.3	0.23	11.9	4.3	1.5	1	0	0	1	1	1	0	Cell	division	protein	ZapB
DUF16	PF01519.16	gi|345007058|ref|YP_004809910.1|	-	0.12	12.9	1.7	0.14	12.7	0.4	1.8	2	0	0	2	2	1	0	Protein	of	unknown	function	DUF16
Atg14	PF10186.9	gi|345007058|ref|YP_004809910.1|	-	0.13	11.3	0.3	0.21	10.6	0.3	1.2	1	0	0	1	1	1	0	Vacuolar	sorting	38	and	autophagy-related	subunit	14
Cep57_CLD_2	PF14197.6	gi|345007058|ref|YP_004809910.1|	-	0.16	12.1	7.4	0.38	10.9	7.4	1.5	1	0	0	1	1	1	0	Centrosome	localisation	domain	of	PPC89
ADIP	PF11559.8	gi|345007058|ref|YP_004809910.1|	-	0.19	11.8	3.1	0.38	10.8	3.1	1.4	1	0	0	1	1	1	0	Afadin-	and	alpha	-actinin-Binding
Prefoldin	PF02996.17	gi|345007058|ref|YP_004809910.1|	-	0.2	11.6	2.8	0.21	11.5	1.0	1.9	2	0	0	2	2	2	0	Prefoldin	subunit
HSBP1	PF06825.12	gi|345007058|ref|YP_004809910.1|	-	0.39	10.6	2.9	13	5.7	0.1	2.6	2	1	1	3	3	2	0	Heat	shock	factor	binding	protein	1
DASH_Spc19	PF08287.11	gi|345007058|ref|YP_004809910.1|	-	1.8	8.4	6.7	1.4	8.8	2.3	2.2	2	0	0	2	2	2	0	Spc19
DUF4407	PF14362.6	gi|345007058|ref|YP_004809910.1|	-	5.3	6.3	5.9	0.4	10.0	1.0	1.6	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4407)
MarR_2	PF12802.7	gi|345007062|ref|YP_004809914.1|	-	2e-07	30.8	0.0	2.8e-07	30.3	0.0	1.3	1	0	0	1	1	1	1	MarR	family
MarR	PF01047.22	gi|345007062|ref|YP_004809914.1|	-	0.00083	19.2	0.0	0.0014	18.5	0.0	1.4	1	0	0	1	1	1	1	MarR	family
TrmB	PF01978.19	gi|345007062|ref|YP_004809914.1|	-	0.003	17.4	0.0	0.0069	16.2	0.0	1.6	1	1	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_IclR	PF09339.10	gi|345007062|ref|YP_004809914.1|	-	0.0052	16.6	0.0	0.0075	16.0	0.0	1.3	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
Rrf2	PF02082.20	gi|345007062|ref|YP_004809914.1|	-	0.0068	16.7	0.0	0.0095	16.3	0.0	1.2	1	0	0	1	1	1	1	Transcriptional	regulator
HTH_27	PF13463.6	gi|345007062|ref|YP_004809914.1|	-	0.015	15.7	0.0	0.025	15.1	0.0	1.4	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
HTH_24	PF13412.6	gi|345007062|ref|YP_004809914.1|	-	0.017	14.7	0.0	0.026	14.1	0.0	1.2	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
HTH_5	PF01022.20	gi|345007062|ref|YP_004809914.1|	-	0.02	14.8	0.0	0.028	14.3	0.0	1.3	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
HTH_Crp_2	PF13545.6	gi|345007062|ref|YP_004809914.1|	-	0.08	12.9	0.0	0.13	12.3	0.0	1.3	1	0	0	1	1	1	0	Crp-like	helix-turn-helix	domain
HTH_34	PF13601.6	gi|345007062|ref|YP_004809914.1|	-	0.1	12.8	0.0	0.16	12.2	0.0	1.3	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
PemK_toxin	PF02452.17	gi|345007063|ref|YP_004809915.1|	-	0.0021	18.5	0.0	0.0026	18.1	0.0	1.2	1	0	0	1	1	1	1	PemK-like,	MazF-like	toxin	of	type	II	toxin-antitoxin	system
CENP-X	PF09415.10	gi|345007064|ref|YP_004809916.1|	-	0.097	13.0	0.0	0.13	12.6	0.0	1.4	1	1	0	1	1	1	0	CENP-S	associating	Centromere	protein	X
COX2_TM	PF02790.15	gi|345007066|ref|YP_004809918.1|	-	0.096	12.8	0.2	6	7.1	0.1	2.0	2	0	0	2	2	2	0	Cytochrome	C	oxidase	subunit	II,	transmembrane	domain
Gram_pos_anchor	PF00746.21	gi|345007066|ref|YP_004809918.1|	-	0.11	12.4	1.0	4.1	7.4	0.0	2.2	2	0	0	2	2	2	0	LPXTG	cell	wall	anchor	motif
HTH_Tnp_Tc5	PF03221.16	gi|345007068|ref|YP_004809920.1|	-	0.11	12.6	0.4	0.14	12.2	0.4	1.4	1	1	0	1	1	1	0	Tc5	transposase	DNA-binding	domain
HTH_20	PF12840.7	gi|345007069|ref|YP_004809921.1|	-	7.6e-06	25.9	0.3	1.8e-05	24.7	0.3	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain
TrmB	PF01978.19	gi|345007069|ref|YP_004809921.1|	-	4.4e-05	23.3	0.0	8.1e-05	22.4	0.0	1.4	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
GntR	PF00392.21	gi|345007069|ref|YP_004809921.1|	-	0.0019	17.8	0.2	0.0054	16.4	0.1	1.8	2	0	0	2	2	2	1	Bacterial	regulatory	proteins,	gntR	family
HTH_5	PF01022.20	gi|345007069|ref|YP_004809921.1|	-	0.0084	16.0	0.0	0.014	15.2	0.0	1.3	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
MarR_2	PF12802.7	gi|345007069|ref|YP_004809921.1|	-	0.012	15.5	0.1	0.021	14.7	0.1	1.4	1	0	0	1	1	1	0	MarR	family
HTH_Crp_2	PF13545.6	gi|345007069|ref|YP_004809921.1|	-	0.014	15.4	0.0	0.028	14.4	0.0	1.5	1	0	0	1	1	1	0	Crp-like	helix-turn-helix	domain
HTH_23	PF13384.6	gi|345007069|ref|YP_004809921.1|	-	0.021	14.6	0.0	0.047	13.5	0.0	1.5	1	0	0	1	1	1	0	Homeodomain-like	domain
HTH_11	PF08279.12	gi|345007069|ref|YP_004809921.1|	-	0.043	13.8	0.1	0.082	12.9	0.1	1.4	1	0	0	1	1	1	0	HTH	domain
RP-C	PF03428.13	gi|345007069|ref|YP_004809921.1|	-	0.045	13.4	0.0	0.081	12.6	0.0	1.3	1	0	0	1	1	1	0	Replication	protein	C	N-terminal	domain
Rrf2	PF02082.20	gi|345007069|ref|YP_004809921.1|	-	0.069	13.5	0.0	1.8	9.0	0.0	2.2	2	0	0	2	2	2	0	Transcriptional	regulator
HTH_IclR	PF09339.10	gi|345007069|ref|YP_004809921.1|	-	0.14	12.0	0.2	0.27	11.0	0.2	1.5	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
DDE_Tnp_IS66	PF03050.14	gi|345007071|ref|YP_004809923.1|	-	7e-49	166.8	0.2	7e-49	166.8	0.2	2.0	2	1	0	2	2	2	1	Transposase	IS66	family
ZapB	PF06005.12	gi|345007071|ref|YP_004809923.1|	-	3e-09	37.2	6.3	9.7e-09	35.6	6.3	1.9	1	0	0	1	1	1	1	Cell	division	protein	ZapB
zf-IS66	PF13005.7	gi|345007071|ref|YP_004809923.1|	-	1.9e-05	25.0	4.3	4.5e-05	23.8	4.3	1.7	1	0	0	1	1	1	1	zinc-finger	binding	domain	of	transposase	IS66
YabA	PF06156.13	gi|345007071|ref|YP_004809923.1|	-	4.3e-05	24.1	4.2	0.00014	22.4	4.2	1.8	1	0	0	1	1	1	1	Initiation	control	protein	YabA
CASP_C	PF08172.12	gi|345007071|ref|YP_004809923.1|	-	0.00024	20.6	1.9	0.00039	19.9	1.9	1.2	1	0	0	1	1	1	1	CASP	C	terminal
JIP_LZII	PF16471.5	gi|345007071|ref|YP_004809923.1|	-	0.00056	20.0	3.4	0.0012	19.0	3.4	1.6	1	0	0	1	1	1	1	JNK-interacting	protein	leucine	zipper	II
bZIP_1	PF00170.21	gi|345007071|ref|YP_004809923.1|	-	0.0018	18.3	7.8	0.004	17.2	7.8	1.6	1	0	0	1	1	1	1	bZIP	transcription	factor
DDE_Tnp_IS240	PF13610.6	gi|345007071|ref|YP_004809923.1|	-	0.003	17.8	0.8	0.013	15.7	0.0	2.3	2	1	0	2	2	2	1	DDE	domain
SlyX	PF04102.12	gi|345007071|ref|YP_004809923.1|	-	0.0054	17.3	5.4	0.014	16.0	5.4	1.7	1	0	0	1	1	1	1	SlyX
NUDE_C	PF04880.13	gi|345007071|ref|YP_004809923.1|	-	0.013	16.0	4.4	0.034	14.6	4.4	1.6	1	0	0	1	1	1	0	NUDE	protein,	C-terminal	conserved	region
CCDC106	PF15794.5	gi|345007071|ref|YP_004809923.1|	-	0.02	14.6	3.6	0.042	13.6	3.6	1.4	1	0	0	1	1	1	0	Coiled-coil	domain-containing	protein	106
Cnn_1N	PF07989.11	gi|345007071|ref|YP_004809923.1|	-	0.026	14.7	6.4	0.056	13.6	6.4	1.5	1	0	0	1	1	1	0	Centrosomin	N-terminal	motif	1
SKA1	PF07160.12	gi|345007071|ref|YP_004809923.1|	-	0.029	14.2	0.9	0.057	13.3	0.9	1.4	1	0	0	1	1	1	0	Spindle	and	kinetochore-associated	protein	1
CENP-H	PF05837.12	gi|345007071|ref|YP_004809923.1|	-	0.03	14.7	3.3	0.072	13.5	3.3	1.6	1	0	0	1	1	1	0	Centromere	protein	H	(CENP-H)
DUF4201	PF13870.6	gi|345007071|ref|YP_004809923.1|	-	0.039	13.7	3.6	0.078	12.7	3.6	1.5	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4201)
RP-C_C	PF11800.8	gi|345007071|ref|YP_004809923.1|	-	0.04	14.0	1.2	0.082	13.0	1.2	1.5	1	0	0	1	1	1	0	Replication	protein	C	C-terminal	region
V_ATPase_I	PF01496.19	gi|345007071|ref|YP_004809923.1|	-	0.049	11.6	2.1	0.07	11.1	2.1	1.1	1	0	0	1	1	1	0	V-type	ATPase	116kDa	subunit	family
HSBP1	PF06825.12	gi|345007071|ref|YP_004809923.1|	-	0.06	13.2	0.3	0.11	12.3	0.3	1.4	1	0	0	1	1	1	0	Heat	shock	factor	binding	protein	1
XhlA	PF10779.9	gi|345007071|ref|YP_004809923.1|	-	0.067	13.4	5.8	0.18	12.0	5.8	1.7	1	0	0	1	1	1	0	Haemolysin	XhlA
FlaC_arch	PF05377.11	gi|345007071|ref|YP_004809923.1|	-	0.072	13.5	3.1	0.17	12.3	3.1	1.6	1	0	0	1	1	1	0	Flagella	accessory	protein	C	(FlaC)
TSC22	PF01166.18	gi|345007071|ref|YP_004809923.1|	-	0.087	13.1	14.9	0.11	12.8	7.5	3.3	2	1	1	3	3	3	0	TSC-22/dip/bun	family
HOOK	PF05622.12	gi|345007071|ref|YP_004809923.1|	-	0.093	10.9	3.9	0.13	10.3	3.9	1.1	1	0	0	1	1	1	0	HOOK	protein
GAS	PF13851.6	gi|345007071|ref|YP_004809923.1|	-	0.12	11.8	6.2	0.21	10.9	6.2	1.3	1	0	0	1	1	1	0	Growth-arrest	specific	micro-tubule	binding
DUF4988	PF16378.5	gi|345007071|ref|YP_004809923.1|	-	0.14	11.8	3.3	0.89	9.2	1.5	2.2	2	0	0	2	2	2	0	Domain	of	unknown	function
HALZ	PF02183.18	gi|345007071|ref|YP_004809923.1|	-	0.2	11.9	7.1	0.26	11.6	6.1	1.8	2	0	0	2	2	1	0	Homeobox	associated	leucine	zipper
EMP24_GP25L	PF01105.24	gi|345007071|ref|YP_004809923.1|	-	0.24	11.3	5.2	4.1	7.3	4.2	2.2	2	0	0	2	2	2	0	emp24/gp25L/p24	family/GOLD
Synaptobrevin	PF00957.21	gi|345007071|ref|YP_004809923.1|	-	0.25	11.1	1.7	0.43	10.4	1.7	1.3	1	0	0	1	1	1	0	Synaptobrevin
Spc24	PF08286.11	gi|345007071|ref|YP_004809923.1|	-	0.27	11.5	3.5	0.57	10.5	3.5	1.5	1	0	0	1	1	1	0	Spc24	subunit	of	Ndc80
DivIC	PF04977.15	gi|345007071|ref|YP_004809923.1|	-	0.31	10.8	8.4	0.77	9.6	8.0	1.9	1	1	0	1	1	1	0	Septum	formation	initiator
SpoVR	PF04293.13	gi|345007071|ref|YP_004809923.1|	-	0.35	9.5	4.7	0.55	8.9	4.7	1.2	1	0	0	1	1	1	0	SpoVR	like	protein
Shugoshin_N	PF07558.11	gi|345007071|ref|YP_004809923.1|	-	0.62	10.0	6.8	0.15	11.9	2.5	2.0	1	1	1	2	2	2	0	Shugoshin	N-terminal	coiled-coil	region
Jnk-SapK_ap_N	PF09744.9	gi|345007071|ref|YP_004809923.1|	-	0.68	10.1	7.3	1.9	8.7	7.3	1.7	1	0	0	1	1	1	0	JNK_SAPK-associated	protein-1
Chibby	PF14645.6	gi|345007071|ref|YP_004809923.1|	-	0.7	10.3	4.1	1.7	9.1	4.1	1.6	1	0	0	1	1	1	0	Chibby	family
APG6_N	PF17675.1	gi|345007071|ref|YP_004809923.1|	-	0.77	10.3	9.2	1.5	9.3	9.2	1.5	1	0	0	1	1	1	0	Apg6	coiled-coil	region
ADIP	PF11559.8	gi|345007071|ref|YP_004809923.1|	-	0.78	9.8	7.1	1.7	8.7	7.1	1.5	1	0	0	1	1	1	0	Afadin-	and	alpha	-actinin-Binding
Prefoldin_2	PF01920.20	gi|345007071|ref|YP_004809923.1|	-	0.92	9.5	8.3	1.8	8.6	8.3	1.4	1	0	0	1	1	1	0	Prefoldin	subunit
bZIP_2	PF07716.15	gi|345007071|ref|YP_004809923.1|	-	1.2	9.3	14.7	8.7	6.5	6.5	2.6	1	1	1	2	2	2	0	Basic	region	leucine	zipper
GIT_CC	PF16559.5	gi|345007071|ref|YP_004809923.1|	-	1.2	9.0	5.9	2.4	8.1	5.9	1.5	1	0	0	1	1	1	0	GIT	coiled-coil	Rho	guanine	nucleotide	exchange	factor
GrpE	PF01025.19	gi|345007071|ref|YP_004809923.1|	-	1.2	8.8	5.5	2.3	7.9	5.5	1.4	1	0	0	1	1	1	0	GrpE
DUF2205	PF10224.9	gi|345007071|ref|YP_004809923.1|	-	1.5	8.9	5.6	3.6	7.7	5.6	1.6	1	0	0	1	1	1	0	Short	coiled-coil	protein
Astro_capsid_p	PF12226.8	gi|345007071|ref|YP_004809923.1|	-	1.5	7.9	4.8	2.3	7.3	4.8	1.2	1	0	0	1	1	1	0	Turkey	astrovirus	capsid	protein
DUF3552	PF12072.8	gi|345007071|ref|YP_004809923.1|	-	2.1	7.7	7.5	3.7	6.9	7.5	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3552)
DUF3450	PF11932.8	gi|345007071|ref|YP_004809923.1|	-	2.3	7.4	8.2	0.46	9.8	3.0	2.3	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF3450)
NRBF2	PF08961.10	gi|345007071|ref|YP_004809923.1|	-	2.4	7.7	14.9	0.031	13.9	7.5	1.6	2	0	0	2	2	1	0	Nuclear	receptor-binding	factor	2,	autophagy	regulator
UPF0242	PF06785.11	gi|345007071|ref|YP_004809923.1|	-	7.3	6.6	7.8	2.4	8.2	5.0	1.6	2	0	0	2	2	1	0	Uncharacterised	protein	family	(UPF0242)	N-terminus
SH3_1	PF00018.28	gi|345007073|ref|YP_004809925.1|	-	0.14	11.8	0.9	3.7	7.2	0.1	3.3	3	1	1	4	4	4	0	SH3	domain
TFIIB	PF00382.19	gi|345007074|ref|YP_004809926.1|	-	4.9e-30	103.4	0.5	2.5e-16	59.5	0.7	2.7	3	0	0	3	3	3	2	Transcription	factor	TFIIB	repeat
TF_Zn_Ribbon	PF08271.12	gi|345007074|ref|YP_004809926.1|	-	3.5e-13	48.8	2.8	6.3e-13	48.0	2.8	1.5	1	0	0	1	1	1	1	TFIIB	zinc-binding
RB_B	PF01857.20	gi|345007074|ref|YP_004809926.1|	-	0.017	15.1	0.0	0.029	14.4	0.0	1.3	1	0	0	1	1	1	0	Retinoblastoma-associated	protein	B	domain
DZR	PF12773.7	gi|345007074|ref|YP_004809926.1|	-	0.017	15.1	1.3	0.036	14.1	1.3	1.5	1	0	0	1	1	1	0	Double	zinc	ribbon
OrfB_Zn_ribbon	PF07282.11	gi|345007074|ref|YP_004809926.1|	-	0.098	12.6	1.6	0.34	10.9	1.1	2.1	2	0	0	2	2	2	0	Putative	transposase	DNA-binding	domain
UPF0547	PF10571.9	gi|345007074|ref|YP_004809926.1|	-	0.38	10.9	2.2	0.89	9.7	2.2	1.6	1	0	0	1	1	1	0	Uncharacterised	protein	family	UPF0547
Zn-ribbon_8	PF09723.10	gi|345007074|ref|YP_004809926.1|	-	1.1	9.5	4.2	5.9	7.1	0.3	2.6	1	1	2	3	3	3	0	Zinc	ribbon	domain
DDE_Tnp_1	PF01609.21	gi|345007076|ref|YP_004809928.1|	-	0.031	13.9	0.1	0.085	12.5	0.1	1.7	1	1	0	1	1	1	0	Transposase	DDE	domain
Response_reg	PF00072.24	gi|345007079|ref|YP_004809931.1|	-	2.6e-19	69.4	0.0	6.6e-19	68.1	0.0	1.7	1	0	0	1	1	1	1	Response	regulator	receiver	domain
PAS	PF00989.25	gi|345007079|ref|YP_004809931.1|	-	3.8e-18	65.5	0.2	3.5e-17	62.4	0.0	2.6	2	0	0	2	2	2	1	PAS	fold
PAS_3	PF08447.12	gi|345007079|ref|YP_004809931.1|	-	6.9e-15	55.1	0.0	2.4e-14	53.4	0.0	1.9	1	0	0	1	1	1	1	PAS	fold
PAS_4	PF08448.10	gi|345007079|ref|YP_004809931.1|	-	1.3e-14	54.4	0.1	6.1e-14	52.2	0.2	2.2	2	0	0	2	2	2	1	PAS	fold
HATPase_c	PF02518.26	gi|345007079|ref|YP_004809931.1|	-	5.3e-12	46.2	0.5	2.7e-11	43.9	0.1	2.4	3	0	0	3	3	3	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
PAS_9	PF13426.7	gi|345007079|ref|YP_004809931.1|	-	9.2e-12	45.1	0.1	4.7e-11	42.9	0.0	2.3	2	0	0	2	2	2	1	PAS	domain
GAF_2	PF13185.6	gi|345007079|ref|YP_004809931.1|	-	6.5e-11	42.7	2.8	3.5e-10	40.3	0.2	2.8	3	0	0	3	3	2	1	GAF	domain
HisKA	PF00512.25	gi|345007079|ref|YP_004809931.1|	-	4.1e-09	36.4	3.8	9.6e-08	32.0	0.4	3.6	3	0	0	3	3	3	1	His	Kinase	A	(phospho-acceptor)	domain
PAS_8	PF13188.7	gi|345007079|ref|YP_004809931.1|	-	2.3e-07	30.7	0.4	9.1e-07	28.8	0.0	2.3	2	0	0	2	2	2	1	PAS	domain
PAS_11	PF14598.6	gi|345007079|ref|YP_004809931.1|	-	5.4e-06	26.5	0.0	1.4e-05	25.2	0.0	1.7	1	0	0	1	1	1	1	PAS	domain
GAF_3	PF13492.6	gi|345007079|ref|YP_004809931.1|	-	0.0012	19.2	0.0	0.006	16.9	0.0	2.2	2	0	0	2	2	2	1	GAF	domain
DUF3696	PF12476.8	gi|345007079|ref|YP_004809931.1|	-	0.012	16.0	2.5	6.7	7.2	0.4	3.2	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF3696)
PAS_10	PF13596.6	gi|345007079|ref|YP_004809931.1|	-	0.046	14.3	0.0	0.19	12.3	0.0	2.1	1	0	0	1	1	1	0	PAS	domain
RseA_C	PF03873.13	gi|345007079|ref|YP_004809931.1|	-	3.1	8.1	4.4	5.8	7.2	0.0	3.3	4	0	0	4	4	4	0	Anti	sigma-E	protein	RseA,	C-terminal	domain
adh_short_C2	PF13561.6	gi|345007080|ref|YP_004809932.1|	-	1.4e-65	221.1	0.6	1.7e-65	220.8	0.6	1.0	1	0	0	1	1	1	1	Enoyl-(Acyl	carrier	protein)	reductase
adh_short	PF00106.25	gi|345007080|ref|YP_004809932.1|	-	2.5e-52	177.2	0.1	3e-52	176.9	0.1	1.1	1	0	0	1	1	1	1	short	chain	dehydrogenase
KR	PF08659.10	gi|345007080|ref|YP_004809932.1|	-	2.5e-11	43.8	0.0	3.8e-11	43.2	0.0	1.4	1	0	0	1	1	1	1	KR	domain
Epimerase	PF01370.21	gi|345007080|ref|YP_004809932.1|	-	6.1e-05	22.6	0.1	0.00068	19.2	0.1	2.0	2	0	0	2	2	2	1	NAD	dependent	epimerase/dehydratase	family
THF_DHG_CYH_C	PF02882.19	gi|345007080|ref|YP_004809932.1|	-	0.003	16.9	1.0	0.005	16.2	0.4	1.7	2	0	0	2	2	2	1	Tetrahydrofolate	dehydrogenase/cyclohydrolase,	NAD(P)-binding	domain
DUF4081	PF13312.6	gi|345007080|ref|YP_004809932.1|	-	0.022	15.0	0.0	0.051	13.8	0.0	1.6	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4081)
RmlD_sub_bind	PF04321.17	gi|345007080|ref|YP_004809932.1|	-	0.022	13.8	0.1	0.04	13.0	0.1	1.4	1	0	0	1	1	1	0	RmlD	substrate	binding	domain
3HCDH_N	PF02737.18	gi|345007080|ref|YP_004809932.1|	-	0.023	14.6	0.2	0.044	13.7	0.2	1.4	1	0	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
NAD_binding_10	PF13460.6	gi|345007080|ref|YP_004809932.1|	-	0.024	14.5	1.0	0.033	14.1	0.2	1.8	2	0	0	2	2	2	0	NAD(P)H-binding
F420_oxidored	PF03807.17	gi|345007080|ref|YP_004809932.1|	-	0.032	14.8	0.0	0.14	12.7	0.0	2.1	2	0	0	2	2	2	0	NADP	oxidoreductase	coenzyme	F420-dependent
2-Hacid_dh_C	PF02826.19	gi|345007080|ref|YP_004809932.1|	-	0.033	13.5	0.0	0.058	12.8	0.0	1.5	1	0	0	1	1	1	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
APH	PF01636.23	gi|345007081|ref|YP_004809933.1|	-	2.8e-43	148.6	5.5	3.6e-43	148.2	5.5	1.2	1	0	0	1	1	1	1	Phosphotransferase	enzyme	family
EcKinase	PF02958.20	gi|345007081|ref|YP_004809933.1|	-	0.00013	21.4	0.0	0.00021	20.7	0.0	1.3	1	0	0	1	1	1	1	Ecdysteroid	kinase
DUF1679	PF07914.11	gi|345007081|ref|YP_004809933.1|	-	0.08	11.8	0.0	0.11	11.3	0.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1679)
HTH_33	PF13592.6	gi|345007081|ref|YP_004809933.1|	-	0.094	12.4	0.1	14	5.4	0.0	2.4	2	0	0	2	2	2	0	Winged	helix-turn	helix
Acyl-CoA_dh_1	PF00441.24	gi|345007082|ref|YP_004809934.1|	-	1.4e-41	142.2	1.3	2.5e-41	141.4	1.3	1.4	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	C-terminal	domain
Acyl-CoA_dh_M	PF02770.19	gi|345007082|ref|YP_004809934.1|	-	1.1e-21	76.9	0.0	2.1e-21	75.9	0.0	1.5	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	middle	domain
Acyl-CoA_dh_2	PF08028.11	gi|345007082|ref|YP_004809934.1|	-	3.6e-19	69.4	1.3	6.9e-19	68.4	1.3	1.5	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	C-terminal	domain
Acyl-CoA_dh_N	PF02771.16	gi|345007082|ref|YP_004809934.1|	-	9e-18	65.0	0.0	3e-17	63.3	0.0	1.9	2	0	0	2	2	2	1	Acyl-CoA	dehydrogenase,	N-terminal	domain
HpaB_N	PF11794.8	gi|345007082|ref|YP_004809934.1|	-	0.0083	15.8	0.9	0.053	13.2	0.0	2.4	3	0	0	3	3	3	1	4-hydroxyphenylacetate	3-hydroxylase	N	terminal
AMP-binding	PF00501.28	gi|345007083|ref|YP_004809935.1|	-	2.9e-95	319.4	0.0	3.3e-95	319.2	0.0	1.0	1	0	0	1	1	1	1	AMP-binding	enzyme
AMP-binding_C	PF13193.6	gi|345007083|ref|YP_004809935.1|	-	7.7e-18	65.3	0.1	1.7e-17	64.2	0.1	1.6	1	0	0	1	1	1	1	AMP-binding	enzyme	C-terminal	domain
adh_short_C2	PF13561.6	gi|345007084|ref|YP_004809936.1|	-	1.3e-55	188.5	2.3	3.1e-55	187.3	2.3	1.5	1	1	0	1	1	1	1	Enoyl-(Acyl	carrier	protein)	reductase
adh_short	PF00106.25	gi|345007084|ref|YP_004809936.1|	-	4.4e-46	156.8	1.1	2.8e-45	154.2	1.1	1.9	1	1	0	1	1	1	1	short	chain	dehydrogenase
KR	PF08659.10	gi|345007084|ref|YP_004809936.1|	-	2.2e-08	34.2	1.3	3.4e-08	33.6	1.3	1.5	1	1	0	1	1	1	1	KR	domain
OCD_Mu_crystall	PF02423.15	gi|345007085|ref|YP_004809937.1|	-	2.9e-64	217.0	0.1	3.8e-64	216.6	0.1	1.1	1	0	0	1	1	1	1	Ornithine	cyclodeaminase/mu-crystallin	family
Shikimate_DH	PF01488.20	gi|345007085|ref|YP_004809937.1|	-	3.6e-07	30.3	0.0	5.9e-07	29.6	0.0	1.2	1	0	0	1	1	1	1	Shikimate	/	quinate	5-dehydrogenase
F420_oxidored	PF03807.17	gi|345007085|ref|YP_004809937.1|	-	7.4e-06	26.5	0.0	1.4e-05	25.6	0.0	1.4	1	0	0	1	1	1	1	NADP	oxidoreductase	coenzyme	F420-dependent
NAD_binding_10	PF13460.6	gi|345007085|ref|YP_004809937.1|	-	0.018	15.0	0.3	0.031	14.2	0.3	1.4	1	0	0	1	1	1	0	NAD(P)H-binding
NAD_binding_2	PF03446.15	gi|345007085|ref|YP_004809937.1|	-	0.078	13.2	0.0	0.16	12.1	0.0	1.6	1	0	0	1	1	1	0	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
FAA_hydrolase	PF01557.18	gi|345007086|ref|YP_004809938.1|	-	3.5e-61	206.6	0.1	4.2e-61	206.4	0.1	1.1	1	0	0	1	1	1	1	Fumarylacetoacetate	(FAA)	hydrolase	family
DUF2437	PF10370.9	gi|345007086|ref|YP_004809938.1|	-	0.0085	17.0	0.1	0.12	13.3	0.0	2.7	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF2437)
Glyoxalase	PF00903.25	gi|345007087|ref|YP_004809939.1|	-	9.2e-10	38.8	0.0	1.2e-09	38.4	0.0	1.2	1	0	0	1	1	1	1	Glyoxalase/Bleomycin	resistance	protein/Dioxygenase	superfamily
Glyoxalase_4	PF13669.6	gi|345007087|ref|YP_004809939.1|	-	6.9e-08	32.7	0.1	3.6e-07	30.4	0.1	1.8	1	1	1	2	2	2	1	Glyoxalase/Bleomycin	resistance	protein/Dioxygenase	superfamily
Glyoxalase_6	PF18029.1	gi|345007087|ref|YP_004809939.1|	-	0.0034	18.1	0.6	0.0045	17.8	0.6	1.2	1	0	0	1	1	1	1	Glyoxalase-like	domain
Peptidase_S15	PF02129.18	gi|345007088|ref|YP_004809940.1|	-	2.7e-63	214.1	0.7	3.5e-63	213.7	0.7	1.1	1	0	0	1	1	1	1	X-Pro	dipeptidyl-peptidase	(S15	family)
PepX_C	PF08530.10	gi|345007088|ref|YP_004809940.1|	-	2.8e-42	145.2	0.0	4e-42	144.7	0.0	1.2	1	0	0	1	1	1	1	X-Pro	dipeptidyl-peptidase	C-terminal	non-catalytic	domain
Hydrolase_4	PF12146.8	gi|345007088|ref|YP_004809940.1|	-	0.0098	15.2	0.1	0.016	14.4	0.1	1.2	1	0	0	1	1	1	1	Serine	aminopeptidase,	S33
Peptidase_S9	PF00326.21	gi|345007088|ref|YP_004809940.1|	-	0.019	14.4	0.3	0.044	13.3	0.1	1.6	2	0	0	2	2	2	0	Prolyl	oligopeptidase	family
Abhydrolase_1	PF00561.20	gi|345007088|ref|YP_004809940.1|	-	0.022	14.4	0.1	0.071	12.7	0.1	1.8	1	1	0	1	1	1	0	alpha/beta	hydrolase	fold
BPD_transp_1	PF00528.22	gi|345007089|ref|YP_004809941.1|	-	1.8e-26	93.0	6.4	2.8e-26	92.4	6.4	1.3	1	0	0	1	1	1	1	Binding-protein-dependent	transport	system	inner	membrane	component
OppC_N	PF12911.7	gi|345007089|ref|YP_004809941.1|	-	1.4e-08	34.5	0.2	5.5e-08	32.7	0.0	2.1	2	0	0	2	2	2	1	N-terminal	TM	domain	of	oligopeptide	transport	permease	C
DUF998	PF06197.13	gi|345007089|ref|YP_004809941.1|	-	0.013	15.1	0.9	0.013	15.1	0.9	3.2	3	1	0	3	3	3	0	Protein	of	unknown	function	(DUF998)
BPD_transp_1	PF00528.22	gi|345007090|ref|YP_004809942.1|	-	4.2e-39	134.2	15.0	4.2e-39	134.2	15.0	1.6	2	0	0	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
SBP_bac_5	PF00496.22	gi|345007091|ref|YP_004809943.1|	-	4.3e-65	220.1	6.0	5.6e-65	219.7	6.0	1.1	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	proteins,	family	5	Middle
ADH_zinc_N	PF00107.26	gi|345007092|ref|YP_004809944.1|	-	7.2e-32	110.1	0.1	1e-31	109.6	0.1	1.2	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
ADH_N	PF08240.12	gi|345007092|ref|YP_004809944.1|	-	3.7e-21	75.1	0.2	7.5e-21	74.1	0.2	1.5	1	0	0	1	1	1	1	Alcohol	dehydrogenase	GroES-like	domain
ADH_zinc_N_2	PF13602.6	gi|345007092|ref|YP_004809944.1|	-	1.1e-15	58.8	0.0	2e-15	58.0	0.0	1.4	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
AlaDh_PNT_C	PF01262.21	gi|345007092|ref|YP_004809944.1|	-	9.4e-05	21.8	0.9	0.00016	21.1	0.6	1.4	1	1	0	1	1	1	1	Alanine	dehydrogenase/PNT,	C-terminal	domain
ADH_N_2	PF16884.5	gi|345007092|ref|YP_004809944.1|	-	0.0003	20.7	0.0	0.00055	19.8	0.0	1.4	1	0	0	1	1	1	1	N-terminal	domain	of	oxidoreductase
adh_short	PF00106.25	gi|345007092|ref|YP_004809944.1|	-	0.0026	17.3	0.4	0.0049	16.4	0.2	1.5	2	0	0	2	2	2	1	short	chain	dehydrogenase
ELFV_dehydrog	PF00208.21	gi|345007092|ref|YP_004809944.1|	-	0.014	15.1	0.0	0.021	14.6	0.0	1.2	1	0	0	1	1	1	0	Glutamate/Leucine/Phenylalanine/Valine	dehydrogenase
THF_DHG_CYH_C	PF02882.19	gi|345007092|ref|YP_004809944.1|	-	0.036	13.4	0.0	0.064	12.6	0.0	1.3	1	0	0	1	1	1	0	Tetrahydrofolate	dehydrogenase/cyclohydrolase,	NAD(P)-binding	domain
Epimerase	PF01370.21	gi|345007092|ref|YP_004809944.1|	-	0.039	13.4	0.4	0.057	12.9	0.4	1.2	1	0	0	1	1	1	0	NAD	dependent	epimerase/dehydratase	family
2-Hacid_dh_C	PF02826.19	gi|345007092|ref|YP_004809944.1|	-	0.049	13.0	0.0	0.082	12.3	0.0	1.3	1	0	0	1	1	1	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
XdhC_C	PF13478.6	gi|345007092|ref|YP_004809944.1|	-	0.11	13.0	0.1	0.16	12.5	0.1	1.3	1	0	0	1	1	1	0	XdhC	Rossmann	domain
Eno-Rase_NADH_b	PF12242.8	gi|345007092|ref|YP_004809944.1|	-	0.24	11.2	0.8	0.44	10.3	0.8	1.4	1	0	0	1	1	1	0	NAD(P)H	binding	domain	of	trans-2-enoyl-CoA	reductase
TPP_enzyme_N	PF02776.18	gi|345007093|ref|YP_004809945.1|	-	1.3e-44	151.8	0.4	2.2e-42	144.6	0.4	2.4	2	0	0	2	2	2	2	Thiamine	pyrophosphate	enzyme,	N-terminal	TPP	binding	domain
TPP_enzyme_C	PF02775.21	gi|345007093|ref|YP_004809945.1|	-	2.6e-34	118.2	0.1	1.5e-33	115.7	0.0	2.2	2	0	0	2	2	2	1	Thiamine	pyrophosphate	enzyme,	C-terminal	TPP	binding	domain
TPP_enzyme_M	PF00205.22	gi|345007093|ref|YP_004809945.1|	-	9.3e-31	106.4	0.0	1.9e-30	105.4	0.0	1.6	1	0	0	1	1	1	1	Thiamine	pyrophosphate	enzyme,	central	domain
Peptidase_M55	PF04951.13	gi|345007093|ref|YP_004809945.1|	-	0.018	14.5	0.0	0.059	12.8	0.0	1.8	2	0	0	2	2	2	0	D-aminopeptidase
Rieske	PF00355.26	gi|345007094|ref|YP_004809946.1|	-	5.9e-15	55.0	0.0	1.3e-14	53.8	0.0	1.6	1	1	0	1	1	1	1	Rieske	[2Fe-2S]	domain
Rieske_2	PF13806.6	gi|345007094|ref|YP_004809946.1|	-	3.1e-11	43.1	0.0	2e-10	40.6	0.0	1.9	1	1	0	1	1	1	1	Rieske-like	[2Fe-2S]	domain
Amidohydro_2	PF04909.14	gi|345007095|ref|YP_004809947.1|	-	2.1e-32	113.1	0.4	2.4e-32	112.9	0.4	1.2	1	0	0	1	1	1	1	Amidohydrolase
Ribosomal_L50	PF10501.9	gi|345007096|ref|YP_004809948.1|	-	0.16	12.1	0.0	0.24	11.6	0.0	1.2	1	0	0	1	1	1	0	Ribosomal	subunit	39S
2-Hacid_dh_C	PF02826.19	gi|345007097|ref|YP_004809949.1|	-	5.9e-55	185.4	0.0	8.1e-55	184.9	0.0	1.2	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
2-Hacid_dh	PF00389.30	gi|345007097|ref|YP_004809949.1|	-	3.8e-21	75.1	0.0	4.7e-21	74.8	0.0	1.1	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	catalytic	domain
UDPG_MGDP_dh_C	PF03720.15	gi|345007097|ref|YP_004809949.1|	-	0.0056	17.1	0.0	0.62	10.5	0.0	2.8	3	0	0	3	3	3	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	UDP	binding	domain
MmgE_PrpD	PF03972.14	gi|345007098|ref|YP_004809950.1|	-	1.2e-82	277.9	7.1	1.4e-82	277.6	7.1	1.0	1	0	0	1	1	1	1	MmgE/PrpD	family
MLTR_LBD	PF17765.1	gi|345007098|ref|YP_004809950.1|	-	0.061	13.5	3.9	3.8	7.6	0.0	2.8	2	1	1	3	3	3	0	MmyB-like	transcription	regulator	ligand	binding	domain
ABC_tran	PF00005.27	gi|345007099|ref|YP_004809951.1|	-	1.1e-32	113.4	0.0	1.6e-32	112.9	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
oligo_HPY	PF08352.12	gi|345007099|ref|YP_004809951.1|	-	2.1e-16	60.2	0.3	4.4e-16	59.2	0.3	1.6	1	0	0	1	1	1	1	Oligopeptide/dipeptide	transporter,	C-terminal	region
AAA_21	PF13304.6	gi|345007099|ref|YP_004809951.1|	-	9.7e-08	32.2	0.2	5.4e-05	23.1	0.1	2.3	1	1	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_22	PF13401.6	gi|345007099|ref|YP_004809951.1|	-	2.9e-05	24.3	0.2	9.7e-05	22.7	0.2	1.8	1	1	0	1	1	1	1	AAA	domain
Sigma54_activat	PF00158.26	gi|345007099|ref|YP_004809951.1|	-	0.00038	20.2	0.1	0.02	14.6	0.0	2.2	2	0	0	2	2	2	1	Sigma-54	interaction	domain
SMC_N	PF02463.19	gi|345007099|ref|YP_004809951.1|	-	0.00055	19.4	0.0	0.24	10.8	0.0	2.1	2	0	0	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
AAA_16	PF13191.6	gi|345007099|ref|YP_004809951.1|	-	0.0037	17.7	0.1	0.0067	16.8	0.1	1.6	1	1	0	1	1	1	1	AAA	ATPase	domain
RsgA_GTPase	PF03193.16	gi|345007099|ref|YP_004809951.1|	-	0.0044	16.9	0.4	0.0083	16.0	0.0	1.6	2	0	0	2	2	2	1	RsgA	GTPase
AAA_29	PF13555.6	gi|345007099|ref|YP_004809951.1|	-	0.0063	16.2	0.0	0.012	15.4	0.0	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
Rad17	PF03215.15	gi|345007099|ref|YP_004809951.1|	-	0.0079	16.1	0.0	0.015	15.2	0.0	1.4	1	0	0	1	1	1	1	Rad17	P-loop	domain
TniB	PF05621.11	gi|345007099|ref|YP_004809951.1|	-	0.01	15.3	0.0	3.7	6.9	0.0	2.2	2	0	0	2	2	2	0	Bacterial	TniB	protein
AAA	PF00004.29	gi|345007099|ref|YP_004809951.1|	-	0.056	13.9	0.0	0.16	12.4	0.0	1.8	2	0	0	2	2	2	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
NB-ARC	PF00931.22	gi|345007099|ref|YP_004809951.1|	-	0.059	12.5	0.0	0.09	11.9	0.0	1.2	1	0	0	1	1	1	0	NB-ARC	domain
NACHT	PF05729.12	gi|345007099|ref|YP_004809951.1|	-	0.11	12.4	0.0	0.19	11.6	0.0	1.4	1	0	0	1	1	1	0	NACHT	domain
AAA_33	PF13671.6	gi|345007099|ref|YP_004809951.1|	-	0.12	12.6	0.0	0.17	12.0	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
IIGP	PF05049.13	gi|345007099|ref|YP_004809951.1|	-	0.15	11.1	0.2	0.22	10.5	0.2	1.2	1	0	0	1	1	1	0	Interferon-inducible	GTPase	(IIGP)
RNA_helicase	PF00910.22	gi|345007099|ref|YP_004809951.1|	-	0.18	12.2	0.0	0.46	10.9	0.0	1.7	2	0	0	2	2	1	0	RNA	helicase
AAA_5	PF07728.14	gi|345007099|ref|YP_004809951.1|	-	0.18	11.8	0.2	0.49	10.4	0.0	1.8	2	0	0	2	2	2	0	AAA	domain	(dynein-related	subfamily)
AAA_24	PF13479.6	gi|345007099|ref|YP_004809951.1|	-	0.18	11.5	0.0	0.32	10.7	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
ATPase_2	PF01637.18	gi|345007099|ref|YP_004809951.1|	-	0.19	11.6	0.0	0.27	11.1	0.0	1.3	1	0	0	1	1	1	0	ATPase	domain	predominantly	from	Archaea
ABC_tran	PF00005.27	gi|345007100|ref|YP_004809952.1|	-	8.2e-30	104.1	0.0	1.1e-29	103.6	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
oligo_HPY	PF08352.12	gi|345007100|ref|YP_004809952.1|	-	5.7e-19	68.4	1.4	8.8e-19	67.8	0.5	1.8	2	0	0	2	2	2	1	Oligopeptide/dipeptide	transporter,	C-terminal	region
AAA_21	PF13304.6	gi|345007100|ref|YP_004809952.1|	-	1.7e-06	28.1	0.2	0.00069	19.5	0.1	2.1	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|345007100|ref|YP_004809952.1|	-	0.00045	19.7	0.0	0.00069	19.1	0.0	1.3	1	0	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA	PF00004.29	gi|345007100|ref|YP_004809952.1|	-	0.0015	18.9	0.0	0.0036	17.7	0.0	1.7	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_29	PF13555.6	gi|345007100|ref|YP_004809952.1|	-	0.019	14.7	0.0	0.034	13.9	0.0	1.3	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
AAA_22	PF13401.6	gi|345007100|ref|YP_004809952.1|	-	0.02	15.2	1.2	0.15	12.3	1.2	2.1	1	1	0	1	1	1	0	AAA	domain
RsgA_GTPase	PF03193.16	gi|345007100|ref|YP_004809952.1|	-	0.036	14.0	0.0	0.058	13.3	0.0	1.3	1	0	0	1	1	1	0	RsgA	GTPase
AAA_16	PF13191.6	gi|345007100|ref|YP_004809952.1|	-	0.062	13.7	0.0	0.1	12.9	0.0	1.5	1	0	0	1	1	1	0	AAA	ATPase	domain
AAA_33	PF13671.6	gi|345007100|ref|YP_004809952.1|	-	0.12	12.5	0.0	0.2	11.8	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
MFS_1	PF07690.16	gi|345007101|ref|YP_004809953.1|	-	5.9e-44	150.4	46.6	1.6e-43	149.0	38.2	2.0	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
MFS_2	PF13347.6	gi|345007101|ref|YP_004809953.1|	-	0.008	14.8	28.0	0.0082	14.8	5.5	2.9	1	1	2	3	3	3	2	MFS/sugar	transport	protein
MFS_1_like	PF12832.7	gi|345007101|ref|YP_004809953.1|	-	0.016	14.0	12.3	0.089	11.6	0.2	2.3	1	1	1	2	2	2	0	MFS_1	like	family
PTR2	PF00854.21	gi|345007101|ref|YP_004809953.1|	-	0.043	12.6	15.9	0.021	13.7	1.7	2.2	2	0	0	2	2	2	0	POT	family
SPC12	PF06645.13	gi|345007101|ref|YP_004809953.1|	-	0.29	11.3	0.1	0.29	11.3	0.1	4.3	5	0	0	5	5	5	0	Microsomal	signal	peptidase	12	kDa	subunit	(SPC12)
TRI12	PF06609.13	gi|345007101|ref|YP_004809953.1|	-	0.53	8.6	15.6	0.0055	15.2	5.0	2.0	1	1	0	2	2	2	0	Fungal	trichothecene	efflux	pump	(TRI12)
OATP	PF03137.20	gi|345007101|ref|YP_004809953.1|	-	6.7	4.9	10.4	0.29	9.3	0.8	2.5	1	1	0	2	2	2	0	Organic	Anion	Transporter	Polypeptide	(OATP)	family
AcetylCoA_hyd_C	PF13336.6	gi|345007102|ref|YP_004809954.1|	-	8.5e-44	149.2	0.0	1.2e-43	148.7	0.0	1.2	1	0	0	1	1	1	1	Acetyl-CoA	hydrolase/transferase	C-terminal	domain
AcetylCoA_hydro	PF02550.15	gi|345007102|ref|YP_004809954.1|	-	1.2e-14	54.8	0.0	3.8e-14	53.1	0.0	1.8	1	1	0	1	1	1	1	Acetyl-CoA	hydrolase/transferase	N-terminal	domain
CitF	PF04223.12	gi|345007102|ref|YP_004809954.1|	-	8.5e-06	24.9	0.1	1.4e-05	24.2	0.1	1.4	1	0	0	1	1	1	1	Citrate	lyase,	alpha	subunit	(CitF)
CoA_trans	PF01144.23	gi|345007102|ref|YP_004809954.1|	-	6e-05	22.6	0.0	9.2e-05	21.9	0.0	1.3	1	0	0	1	1	1	1	Coenzyme	A	transferase
ADSL_C	PF10397.9	gi|345007102|ref|YP_004809954.1|	-	0.094	13.3	0.0	0.27	11.8	0.0	1.8	1	0	0	1	1	1	0	Adenylosuccinate	lyase	C-terminus
MaoC_dehydratas	PF01575.19	gi|345007103|ref|YP_004809955.1|	-	1.6e-23	82.6	0.3	2.1e-23	82.2	0.3	1.1	1	0	0	1	1	1	1	MaoC	like	domain
MaoC_dehydrat_N	PF13452.6	gi|345007103|ref|YP_004809955.1|	-	1.2e-07	31.9	0.1	1.7e-07	31.4	0.1	1.2	1	0	0	1	1	1	1	N-terminal	half	of	MaoC	dehydratase
Acyl-CoA_dh_1	PF00441.24	gi|345007104|ref|YP_004809956.1|	-	6.9e-38	130.2	2.3	1.2e-37	129.5	2.3	1.4	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	C-terminal	domain
Acyl-CoA_dh_N	PF02771.16	gi|345007104|ref|YP_004809956.1|	-	5.3e-25	88.3	0.0	1.3e-24	87.0	0.0	1.7	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	N-terminal	domain
Acyl-CoA_dh_M	PF02770.19	gi|345007104|ref|YP_004809956.1|	-	5.1e-21	74.7	0.0	8.3e-21	74.0	0.0	1.4	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	middle	domain
Acyl-CoA_dh_2	PF08028.11	gi|345007104|ref|YP_004809956.1|	-	7.9e-21	74.7	7.4	1.4e-20	73.9	7.4	1.4	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	C-terminal	domain
IclR	PF01614.18	gi|345007105|ref|YP_004809957.1|	-	4.3e-35	120.4	0.0	1.1e-34	119.1	0.0	1.7	2	0	0	2	2	2	1	Bacterial	transcriptional	regulator
HTH_IclR	PF09339.10	gi|345007105|ref|YP_004809957.1|	-	4.4e-13	48.8	0.2	6.7e-12	45.0	0.0	2.5	2	1	0	2	2	2	1	IclR	helix-turn-helix	domain
MarR_2	PF12802.7	gi|345007105|ref|YP_004809957.1|	-	4.3e-08	32.9	0.0	2e-07	30.8	0.0	2.1	3	0	0	3	3	2	1	MarR	family
HTH_24	PF13412.6	gi|345007105|ref|YP_004809957.1|	-	8.6e-08	31.6	0.0	1.8e-07	30.6	0.0	1.6	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_5	PF01022.20	gi|345007105|ref|YP_004809957.1|	-	8.5e-07	28.8	0.0	1.8e-06	27.7	0.0	1.5	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_20	PF12840.7	gi|345007105|ref|YP_004809957.1|	-	2.1e-06	27.7	0.0	5.6e-06	26.3	0.0	1.7	1	0	0	1	1	1	1	Helix-turn-helix	domain
MarR	PF01047.22	gi|345007105|ref|YP_004809957.1|	-	1.3e-05	25.0	0.1	7.5e-05	22.6	0.0	2.1	2	0	0	2	2	2	1	MarR	family
HTH_38	PF13936.6	gi|345007105|ref|YP_004809957.1|	-	0.00015	21.5	0.0	0.00049	19.8	0.0	1.8	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_Crp_2	PF13545.6	gi|345007105|ref|YP_004809957.1|	-	0.00028	20.8	0.1	0.34	10.9	0.0	2.4	2	0	0	2	2	2	2	Crp-like	helix-turn-helix	domain
HTH_40	PF14493.6	gi|345007105|ref|YP_004809957.1|	-	0.00046	20.6	0.0	0.0011	19.3	0.0	1.7	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_27	PF13463.6	gi|345007105|ref|YP_004809957.1|	-	0.00069	20.1	0.2	0.0022	18.5	0.1	1.8	2	0	0	2	2	2	1	Winged	helix	DNA-binding	domain
HTH_11	PF08279.12	gi|345007105|ref|YP_004809957.1|	-	0.00097	19.0	0.0	0.0059	16.5	0.0	2.3	2	0	0	2	2	2	1	HTH	domain
TrmB	PF01978.19	gi|345007105|ref|YP_004809957.1|	-	0.0013	18.6	0.0	0.0031	17.4	0.0	1.6	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_DeoR	PF08220.12	gi|345007105|ref|YP_004809957.1|	-	0.0019	17.9	0.1	0.0054	16.4	0.1	1.7	1	0	0	1	1	1	1	DeoR-like	helix-turn-helix	domain
HTH_23	PF13384.6	gi|345007105|ref|YP_004809957.1|	-	0.0052	16.5	0.0	0.014	15.2	0.0	1.7	1	0	0	1	1	1	1	Homeodomain-like	domain
GerE	PF00196.19	gi|345007105|ref|YP_004809957.1|	-	0.0058	16.2	0.0	0.012	15.2	0.0	1.4	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	luxR	family
Fe_dep_repress	PF01325.19	gi|345007105|ref|YP_004809957.1|	-	0.015	15.5	0.0	0.038	14.2	0.0	1.7	1	0	0	1	1	1	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_45	PF14947.6	gi|345007105|ref|YP_004809957.1|	-	0.024	14.6	0.0	0.053	13.5	0.0	1.6	1	0	0	1	1	1	0	Winged	helix-turn-helix
SpoIIID	PF12116.8	gi|345007105|ref|YP_004809957.1|	-	0.031	14.4	0.0	0.065	13.3	0.0	1.5	1	0	0	1	1	1	0	Stage	III	sporulation	protein	D
GAF	PF01590.26	gi|345007105|ref|YP_004809957.1|	-	0.055	14.1	0.0	0.074	13.7	0.0	1.6	1	1	0	1	1	1	0	GAF	domain
LexA_DNA_bind	PF01726.16	gi|345007105|ref|YP_004809957.1|	-	0.063	13.1	0.0	0.19	11.5	0.0	1.8	1	0	0	1	1	1	0	LexA	DNA	binding	domain
HTH_36	PF13730.6	gi|345007105|ref|YP_004809957.1|	-	0.12	12.3	0.0	0.3	11.1	0.0	1.7	1	0	0	1	1	1	0	Helix-turn-helix	domain
Haem_degrading	PF03928.14	gi|345007105|ref|YP_004809957.1|	-	0.17	12.0	0.3	0.67	10.0	0.3	2.0	1	1	0	1	1	1	0	Haem-degrading
B-block_TFIIIC	PF04182.12	gi|345007105|ref|YP_004809957.1|	-	0.18	12.0	0.0	0.28	11.4	0.0	1.3	1	0	0	1	1	1	0	B-block	binding	subunit	of	TFIIIC
zinc_ribbon_5	PF13719.6	gi|345007106|ref|YP_004809958.1|	-	0.028	14.2	0.2	0.061	13.1	0.2	1.5	1	0	0	1	1	1	0	zinc-ribbon	domain
zinc_ribbon_4	PF13717.6	gi|345007106|ref|YP_004809958.1|	-	0.11	12.4	0.1	0.25	11.3	0.1	1.6	1	0	0	1	1	1	0	zinc-ribbon	domain
Spc7	PF08317.11	gi|345007107|ref|YP_004809959.1|	-	7.9e-06	25.0	54.4	0.0099	14.8	11.9	4.1	2	2	1	3	3	3	3	Spc7	kinetochore	protein
TPR_MLP1_2	PF07926.12	gi|345007107|ref|YP_004809959.1|	-	0.00053	20.0	48.4	0.097	12.7	10.5	4.9	2	2	2	4	4	4	3	TPR/MLP1/MLP2-like	protein
Seryl_tRNA_N	PF02403.22	gi|345007107|ref|YP_004809959.1|	-	0.00097	19.3	41.0	0.18	12.1	2.1	5.6	2	2	2	5	5	5	3	Seryl-tRNA	synthetase	N-terminal	domain
SMC_N	PF02463.19	gi|345007107|ref|YP_004809959.1|	-	0.0022	17.5	0.4	0.015	14.7	0.3	2.0	2	0	0	2	2	2	1	RecF/RecN/SMC	N	terminal	domain
Baculo_PEP_C	PF04513.12	gi|345007107|ref|YP_004809959.1|	-	0.0031	17.6	20.3	1.6	8.7	1.4	5.0	2	2	2	4	4	4	2	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
WXG100	PF06013.12	gi|345007107|ref|YP_004809959.1|	-	0.0044	17.2	12.8	1.1	9.6	0.2	6.3	4	2	1	5	5	5	1	Proteins	of	100	residues	with	WXG
DHR10	PF18595.1	gi|345007107|ref|YP_004809959.1|	-	0.0056	16.7	6.0	0.0056	16.7	6.0	5.7	2	2	3	5	5	5	2	Designed	helical	repeat	protein	10	domain
CENP-F_leu_zip	PF10473.9	gi|345007107|ref|YP_004809959.1|	-	0.0087	16.1	62.8	0.45	10.5	12.4	5.0	2	2	3	5	5	5	2	Leucine-rich	repeats	of	kinetochore	protein	Cenp-F/LEK1
DUF4407	PF14362.6	gi|345007107|ref|YP_004809959.1|	-	0.011	15.2	40.0	0.085	12.2	12.8	3.6	1	1	2	3	3	3	0	Domain	of	unknown	function	(DUF4407)
DUF5082	PF16888.5	gi|345007107|ref|YP_004809959.1|	-	0.011	16.0	42.6	0.098	12.9	5.3	6.5	3	2	3	6	6	6	0	Domain	of	unknown	function	(DUF5082)
Vps51	PF08700.11	gi|345007107|ref|YP_004809959.1|	-	0.013	15.6	0.6	0.013	15.6	0.6	5.6	4	2	2	6	6	6	0	Vps51/Vps67
Fib_alpha	PF08702.10	gi|345007107|ref|YP_004809959.1|	-	0.013	15.7	4.9	0.013	15.7	4.9	4.4	3	1	0	4	4	4	0	Fibrinogen	alpha/beta	chain	family
ATG16	PF08614.11	gi|345007107|ref|YP_004809959.1|	-	0.026	14.8	73.1	0.031	14.5	19.0	4.7	1	1	2	4	4	4	0	Autophagy	protein	16	(ATG16)
Atg14	PF10186.9	gi|345007107|ref|YP_004809959.1|	-	0.043	12.9	43.4	0.44	9.6	16.7	4.1	1	1	2	3	3	3	0	Vacuolar	sorting	38	and	autophagy-related	subunit	14
DUF1870	PF08965.10	gi|345007107|ref|YP_004809959.1|	-	0.092	12.8	5.6	0.21	11.6	0.2	3.8	2	1	1	3	3	3	0	Domain	of	unknown	function	(DUF1870)
DASH_Dam1	PF08653.10	gi|345007107|ref|YP_004809959.1|	-	0.13	12.1	15.8	14	5.6	0.1	6.4	6	1	2	8	8	7	0	DASH	complex	subunit	Dam1
WEMBL	PF05701.11	gi|345007107|ref|YP_004809959.1|	-	0.16	10.6	49.4	0.038	12.7	19.6	2.7	2	1	0	2	2	2	0	Weak	chloroplast	movement	under	blue	light
DUF3450	PF11932.8	gi|345007107|ref|YP_004809959.1|	-	0.32	10.3	46.1	0.029	13.7	6.1	5.8	2	2	5	7	7	7	0	Protein	of	unknown	function	(DUF3450)
GAS	PF13851.6	gi|345007107|ref|YP_004809959.1|	-	0.56	9.5	46.3	0.57	9.5	16.4	4.4	2	2	2	4	4	4	0	Growth-arrest	specific	micro-tubule	binding
YabA	PF06156.13	gi|345007107|ref|YP_004809959.1|	-	0.61	10.8	39.8	0.35	11.5	5.2	5.9	2	2	4	6	6	6	0	Initiation	control	protein	YabA
FapA	PF03961.13	gi|345007107|ref|YP_004809959.1|	-	0.66	8.5	33.2	0.87	8.1	4.4	4.1	1	1	3	4	4	4	0	Flagellar	Assembly	Protein	A
DUF724	PF05266.14	gi|345007107|ref|YP_004809959.1|	-	1.1	9.0	36.3	2	8.2	9.1	4.3	2	2	2	4	4	4	0	Protein	of	unknown	function	(DUF724)
APG6_N	PF17675.1	gi|345007107|ref|YP_004809959.1|	-	1.3	9.6	77.6	0.77	10.3	24.0	6.5	1	1	5	6	6	6	0	Apg6	coiled-coil	region
DUF1664	PF07889.12	gi|345007107|ref|YP_004809959.1|	-	1.3	9.0	36.6	0.19	11.8	1.4	6.2	2	2	2	6	6	6	0	Protein	of	unknown	function	(DUF1664)
FlaC_arch	PF05377.11	gi|345007107|ref|YP_004809959.1|	-	1.4	9.3	41.3	0.61	10.5	0.3	8.7	4	2	4	9	9	9	0	Flagella	accessory	protein	C	(FlaC)
Fzo_mitofusin	PF04799.13	gi|345007107|ref|YP_004809959.1|	-	2	8.0	32.3	1.4	8.4	0.7	5.8	2	2	4	6	6	6	0	fzo-like	conserved	region
Rab5-bind	PF09311.11	gi|345007107|ref|YP_004809959.1|	-	2.2	7.6	52.0	0.33	10.3	10.1	4.0	1	1	2	3	3	3	0	Rabaptin-like	protein
FAM76	PF16046.5	gi|345007107|ref|YP_004809959.1|	-	2.2	7.6	26.9	0.02	14.2	5.0	3.1	2	1	1	3	3	3	0	FAM76	protein
DivIC	PF04977.15	gi|345007107|ref|YP_004809959.1|	-	2.3	8.0	60.4	0.38	10.5	1.6	8.6	2	2	5	8	8	8	0	Septum	formation	initiator
Fez1	PF06818.15	gi|345007107|ref|YP_004809959.1|	-	2.4	8.6	52.9	1.1	9.7	17.8	4.2	1	1	3	4	4	4	0	Fez1
FlxA	PF14282.6	gi|345007107|ref|YP_004809959.1|	-	2.5	8.1	23.3	2.5	8.2	0.1	5.5	3	1	2	5	5	5	0	FlxA-like	protein
TACC_C	PF05010.14	gi|345007107|ref|YP_004809959.1|	-	2.6	7.8	34.0	1.1	9.1	7.8	3.5	2	2	1	3	3	3	0	Transforming	acidic	coiled-coil-containing	protein	(TACC),	C-terminal
OmpH	PF03938.14	gi|345007107|ref|YP_004809959.1|	-	2.7	8.3	37.8	2	8.7	8.3	4.5	2	2	2	4	4	4	0	Outer	membrane	protein	(OmpH-like)
Laminin_II	PF06009.12	gi|345007107|ref|YP_004809959.1|	-	3.1	7.8	26.2	5.9	6.9	4.3	5.6	4	2	2	6	6	5	0	Laminin	Domain	II
NPV_P10	PF05531.12	gi|345007107|ref|YP_004809959.1|	-	3.6	8.1	25.9	24	5.5	2.0	7.0	3	2	4	7	7	7	0	Nucleopolyhedrovirus	P10	protein
Baculo_F	PF12259.8	gi|345007107|ref|YP_004809959.1|	-	4.7	5.6	18.0	0.27	9.7	7.0	2.3	2	1	0	2	2	2	0	Baculovirus	F	protein
TMF_TATA_bd	PF12325.8	gi|345007107|ref|YP_004809959.1|	-	4.9	7.4	62.5	10	6.4	8.5	6.3	2	2	4	6	6	6	0	TATA	element	modulatory	factor	1	TATA	binding
Lectin_N	PF03954.14	gi|345007107|ref|YP_004809959.1|	-	5.3	6.8	14.6	3.7	7.3	0.8	4.3	2	2	3	5	5	5	0	Hepatic	lectin,	N-terminal	domain
bZIP_1	PF00170.21	gi|345007107|ref|YP_004809959.1|	-	5.5	7.2	36.7	0.88	9.7	0.4	7.3	4	2	3	8	8	8	0	bZIP	transcription	factor
T3SSipB	PF16535.5	gi|345007107|ref|YP_004809959.1|	-	5.8	7.4	13.4	0.099	13.1	1.2	3.2	3	1	1	4	4	3	0	Type	III	cell	invasion	protein	SipB
KASH_CCD	PF14662.6	gi|345007107|ref|YP_004809959.1|	-	6.3	6.6	53.9	2	8.2	17.6	4.4	2	2	2	4	4	4	0	Coiled-coil	region	of	CCDC155	or	KASH
FTA4	PF13093.6	gi|345007107|ref|YP_004809959.1|	-	8.1	6.3	40.5	12	5.8	3.2	4.7	1	1	2	3	3	3	0	Kinetochore	complex	Fta4	of	Sim4	subunit,	or	CENP-50
COG2	PF06148.11	gi|345007107|ref|YP_004809959.1|	-	9.1	6.4	32.8	0.2	11.7	4.0	5.3	2	2	3	5	5	5	0	COG	(conserved	oligomeric	Golgi)	complex	component,	COG2
DDE_Tnp_IS240	PF13610.6	gi|345007108|ref|YP_004809960.1|	-	3.1e-17	63.1	0.0	4.2e-17	62.7	0.0	1.2	1	0	0	1	1	1	1	DDE	domain
DDE_Tnp_IS66	PF03050.14	gi|345007108|ref|YP_004809960.1|	-	0.00047	19.7	0.4	0.0013	18.3	0.1	1.7	1	1	0	1	1	1	1	Transposase	IS66	family
DDE_3	PF13358.6	gi|345007108|ref|YP_004809960.1|	-	0.0014	18.4	0.0	0.0025	17.6	0.0	1.5	1	1	0	1	1	1	1	DDE	superfamily	endonuclease
AbiEi_2	PF09952.9	gi|345007108|ref|YP_004809960.1|	-	0.0075	16.5	0.4	0.013	15.8	0.0	1.5	2	0	0	2	2	2	1	Transcriptional	regulator,	AbiEi	antitoxin,	Type	IV	TA	system
rve	PF00665.26	gi|345007108|ref|YP_004809960.1|	-	0.02	15.1	0.0	0.038	14.2	0.0	1.5	1	0	0	1	1	1	0	Integrase	core	domain
PG_binding_2	PF08823.11	gi|345007108|ref|YP_004809960.1|	-	0.15	12.4	1.6	0.98	9.8	0.0	2.6	3	0	0	3	3	3	0	Putative	peptidoglycan	binding	domain
Milton	PF12448.8	gi|345007108|ref|YP_004809960.1|	-	0.21	11.7	0.6	0.36	10.9	0.6	1.3	1	0	0	1	1	1	0	Kinesin	associated	protein
ZapB	PF06005.12	gi|345007110|ref|YP_004809962.1|	-	0.02	15.3	4.7	0.02	15.3	4.7	2.9	3	0	0	3	3	3	0	Cell	division	protein	ZapB
betaPIX_CC	PF16523.5	gi|345007110|ref|YP_004809962.1|	-	0.028	14.3	4.3	0.058	13.2	4.3	1.5	1	0	0	1	1	1	0	betaPIX	coiled	coil
ASD2	PF08687.11	gi|345007110|ref|YP_004809962.1|	-	3.2	7.2	12.2	0.11	12.0	5.1	1.9	2	0	0	2	2	2	0	Apx/Shroom	domain	ASD2
DUF87	PF01935.17	gi|345007111|ref|YP_004809963.1|	-	0.0018	18.5	0.0	0.015	15.4	0.0	2.2	2	0	0	2	2	2	1	Helicase	HerA,	central	domain
TrwB_AAD_bind	PF10412.9	gi|345007111|ref|YP_004809963.1|	-	0.0023	16.9	0.0	0.057	12.3	0.0	2.5	3	0	0	3	3	3	1	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
TraG-D_C	PF12696.7	gi|345007111|ref|YP_004809963.1|	-	0.011	15.8	0.0	0.027	14.5	0.0	1.7	1	0	0	1	1	1	0	TraM	recognition	site	of	TraD	and	TraG
AAA_10	PF12846.7	gi|345007111|ref|YP_004809963.1|	-	0.13	11.1	0.0	0.3	10.0	0.0	1.5	1	0	0	1	1	1	0	AAA-like	domain
HTH_20	PF12840.7	gi|345007113|ref|YP_004809965.1|	-	0.00023	21.1	0.0	0.00079	19.4	0.0	1.8	2	0	0	2	2	2	1	Helix-turn-helix	domain
Fe_dep_repress	PF01325.19	gi|345007113|ref|YP_004809965.1|	-	0.015	15.5	0.0	0.035	14.3	0.0	1.6	1	0	0	1	1	1	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_24	PF13412.6	gi|345007113|ref|YP_004809965.1|	-	0.015	14.8	0.0	0.064	12.8	0.0	2.0	2	0	0	2	2	2	0	Winged	helix-turn-helix	DNA-binding
TrmB	PF01978.19	gi|345007113|ref|YP_004809965.1|	-	0.038	13.9	0.0	0.084	12.8	0.0	1.5	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
NapD	PF03927.13	gi|345007113|ref|YP_004809965.1|	-	0.071	13.2	0.1	0.17	11.9	0.1	1.6	1	1	0	1	1	1	0	NapD	protein
Sigma70_r4_2	PF08281.12	gi|345007113|ref|YP_004809965.1|	-	0.081	12.6	0.0	0.2	11.4	0.0	1.7	1	0	0	1	1	1	0	Sigma-70,	region	4
HTH_5	PF01022.20	gi|345007113|ref|YP_004809965.1|	-	0.09	12.7	0.0	0.22	11.4	0.0	1.6	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
PemK_toxin	PF02452.17	gi|345007114|ref|YP_004809966.1|	-	0.018	15.4	0.0	0.02	15.3	0.0	1.1	1	0	0	1	1	1	0	PemK-like,	MazF-like	toxin	of	type	II	toxin-antitoxin	system
MarR_2	PF12802.7	gi|345007115|ref|YP_004809967.1|	-	1.3e-08	34.5	0.0	2e-08	34.0	0.0	1.3	1	0	0	1	1	1	1	MarR	family
TrmB	PF01978.19	gi|345007115|ref|YP_004809967.1|	-	7e-06	25.8	0.0	1.1e-05	25.2	0.0	1.3	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_Crp_2	PF13545.6	gi|345007115|ref|YP_004809967.1|	-	1.1e-05	25.3	0.0	1.5e-05	24.9	0.0	1.2	1	0	0	1	1	1	1	Crp-like	helix-turn-helix	domain
Rrf2	PF02082.20	gi|345007115|ref|YP_004809967.1|	-	2.3e-05	24.7	0.0	3.2e-05	24.2	0.0	1.1	1	0	0	1	1	1	1	Transcriptional	regulator
PaaX	PF07848.12	gi|345007115|ref|YP_004809967.1|	-	6.8e-05	23.0	0.0	0.00011	22.3	0.0	1.3	1	0	0	1	1	1	1	PaaX-like	protein
Fe_dep_repress	PF01325.19	gi|345007115|ref|YP_004809967.1|	-	7.1e-05	22.9	0.0	0.00014	21.9	0.0	1.5	1	0	0	1	1	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_IclR	PF09339.10	gi|345007115|ref|YP_004809967.1|	-	7.4e-05	22.5	0.0	0.00014	21.6	0.0	1.5	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
MarR	PF01047.22	gi|345007115|ref|YP_004809967.1|	-	0.00023	21.0	0.1	0.00061	19.7	0.0	1.6	2	0	0	2	2	2	1	MarR	family
DUF4423	PF14394.6	gi|345007115|ref|YP_004809967.1|	-	0.00029	20.6	0.0	0.00033	20.4	0.0	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4423)
HTH_5	PF01022.20	gi|345007115|ref|YP_004809967.1|	-	0.00038	20.3	0.0	0.00055	19.8	0.0	1.2	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
GntR	PF00392.21	gi|345007115|ref|YP_004809967.1|	-	0.00086	18.9	0.1	0.0014	18.2	0.1	1.3	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	gntR	family
HTH_24	PF13412.6	gi|345007115|ref|YP_004809967.1|	-	0.0021	17.6	0.1	0.0031	17.1	0.1	1.3	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_27	PF13463.6	gi|345007115|ref|YP_004809967.1|	-	0.0026	18.2	0.0	0.0039	17.6	0.0	1.3	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
HrcA_DNA-bdg	PF03444.15	gi|345007115|ref|YP_004809967.1|	-	0.0059	16.2	0.0	0.0093	15.6	0.0	1.2	1	0	0	1	1	1	1	Winged	helix-turn-helix	transcription	repressor,	HrcA	DNA-binding
HTH_11	PF08279.12	gi|345007115|ref|YP_004809967.1|	-	0.0094	15.9	0.0	0.016	15.1	0.0	1.4	1	0	0	1	1	1	1	HTH	domain
HemN_C	PF06969.16	gi|345007115|ref|YP_004809967.1|	-	0.012	15.7	0.0	0.057	13.5	0.0	2.1	2	1	0	2	2	2	0	HemN	C-terminal	domain
Sigma70_r4_2	PF08281.12	gi|345007115|ref|YP_004809967.1|	-	0.036	13.7	0.0	0.061	13.0	0.0	1.4	1	0	0	1	1	1	0	Sigma-70,	region	4
HTH_CodY	PF08222.11	gi|345007115|ref|YP_004809967.1|	-	0.037	13.6	0.0	0.059	12.9	0.0	1.3	1	0	0	1	1	1	0	CodY	helix-turn-helix	domain
RlmM_FDX	PF18125.1	gi|345007115|ref|YP_004809967.1|	-	0.048	14.1	0.0	0.081	13.4	0.0	1.4	1	0	0	1	1	1	0	RlmM	ferredoxin-like	domain
HTH_20	PF12840.7	gi|345007115|ref|YP_004809967.1|	-	0.055	13.5	0.0	0.081	13.0	0.0	1.3	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_10	PF04967.12	gi|345007115|ref|YP_004809967.1|	-	0.074	12.9	0.1	0.14	12.0	0.1	1.4	1	0	0	1	1	1	0	HTH	DNA	binding	domain
LexA_DNA_bind	PF01726.16	gi|345007115|ref|YP_004809967.1|	-	0.08	12.7	0.0	0.21	11.4	0.0	1.7	2	0	0	2	2	1	0	LexA	DNA	binding	domain
HTH_36	PF13730.6	gi|345007115|ref|YP_004809967.1|	-	0.089	12.8	0.0	0.25	11.3	0.0	1.8	2	1	0	2	2	2	0	Helix-turn-helix	domain
tRNA_anti-codon	PF01336.25	gi|345007116|ref|YP_004809968.1|	-	0.057	13.4	0.1	0.12	12.3	0.1	1.6	1	0	0	1	1	1	0	OB-fold	nucleic	acid	binding	domain
PIN	PF01850.21	gi|345007117|ref|YP_004809969.1|	-	6.1e-07	30.0	1.0	7.4e-07	29.7	1.0	1.1	1	0	0	1	1	1	1	PIN	domain
HTH_20	PF12840.7	gi|345007119|ref|YP_004809971.1|	-	0.00066	19.7	0.7	0.12	12.5	0.1	2.3	2	1	0	2	2	2	2	Helix-turn-helix	domain
HTH_AsnC-type	PF13404.6	gi|345007120|ref|YP_004809972.1|	-	2.4e-10	40.1	0.8	6.3e-10	38.7	0.8	1.8	1	0	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
HTH_24	PF13412.6	gi|345007120|ref|YP_004809972.1|	-	9.2e-10	37.9	2.0	9.4e-10	37.9	0.6	1.8	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
HTH_11	PF08279.12	gi|345007120|ref|YP_004809972.1|	-	8.5e-07	28.8	0.1	2.4e-06	27.4	0.1	1.8	2	0	0	2	2	2	1	HTH	domain
HTH_27	PF13463.6	gi|345007120|ref|YP_004809972.1|	-	3.7e-05	24.1	0.1	8.2e-05	23.0	0.1	1.6	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
HTH_20	PF12840.7	gi|345007120|ref|YP_004809972.1|	-	0.00048	20.1	0.0	0.0013	18.7	0.0	1.8	2	0	0	2	2	2	1	Helix-turn-helix	domain
MarR_2	PF12802.7	gi|345007120|ref|YP_004809972.1|	-	0.00082	19.2	0.0	0.0015	18.3	0.0	1.4	1	0	0	1	1	1	1	MarR	family
HTH_IclR	PF09339.10	gi|345007120|ref|YP_004809972.1|	-	0.015	15.0	0.2	0.047	13.5	0.0	1.8	2	0	0	2	2	2	0	IclR	helix-turn-helix	domain
HTH_23	PF13384.6	gi|345007120|ref|YP_004809972.1|	-	0.088	12.6	0.1	0.16	11.8	0.1	1.3	1	0	0	1	1	1	0	Homeodomain-like	domain
HTH_CodY	PF08222.11	gi|345007120|ref|YP_004809972.1|	-	0.13	11.9	0.1	0.34	10.5	0.0	1.7	2	0	0	2	2	2	0	CodY	helix-turn-helix	domain
HTH_DeoR	PF08220.12	gi|345007120|ref|YP_004809972.1|	-	0.25	11.1	1.6	0.33	10.7	0.5	1.7	2	0	0	2	2	2	0	DeoR-like	helix-turn-helix	domain
HTH_24	PF13412.6	gi|345007121|ref|YP_004809973.1|	-	5.3e-12	45.1	0.3	1e-11	44.2	0.1	1.6	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
HTH_AsnC-type	PF13404.6	gi|345007121|ref|YP_004809973.1|	-	9.2e-12	44.6	0.0	1.9e-11	43.6	0.0	1.6	1	0	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
HTH_11	PF08279.12	gi|345007121|ref|YP_004809973.1|	-	1.9e-06	27.7	0.1	4.1e-05	23.4	0.0	2.3	2	0	0	2	2	2	1	HTH	domain
HTH_20	PF12840.7	gi|345007121|ref|YP_004809973.1|	-	0.00016	21.7	0.0	0.00045	20.2	0.0	1.7	1	0	0	1	1	1	1	Helix-turn-helix	domain
MarR	PF01047.22	gi|345007121|ref|YP_004809973.1|	-	0.00066	19.5	0.0	0.0011	18.8	0.0	1.4	1	0	0	1	1	1	1	MarR	family
Fe_dep_repress	PF01325.19	gi|345007121|ref|YP_004809973.1|	-	0.0011	19.1	0.0	0.0028	17.8	0.0	1.6	1	0	0	1	1	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_28	PF13518.6	gi|345007121|ref|YP_004809973.1|	-	0.0027	17.8	0.0	0.0047	17.0	0.0	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_DeoR	PF08220.12	gi|345007121|ref|YP_004809973.1|	-	0.0036	17.0	0.0	0.0085	15.8	0.0	1.6	1	0	0	1	1	1	1	DeoR-like	helix-turn-helix	domain
MarR_2	PF12802.7	gi|345007121|ref|YP_004809973.1|	-	0.004	17.0	0.0	0.008	16.0	0.0	1.5	1	0	0	1	1	1	1	MarR	family
HTH_23	PF13384.6	gi|345007121|ref|YP_004809973.1|	-	0.0082	15.9	0.0	0.015	15.1	0.0	1.4	1	0	0	1	1	1	1	Homeodomain-like	domain
HTH_5	PF01022.20	gi|345007121|ref|YP_004809973.1|	-	0.014	15.2	0.0	0.026	14.4	0.0	1.5	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
TrmB	PF01978.19	gi|345007121|ref|YP_004809973.1|	-	0.02	14.8	0.1	0.051	13.5	0.0	1.6	2	0	0	2	2	2	0	Sugar-specific	transcriptional	regulator	TrmB
HTH_Crp_2	PF13545.6	gi|345007121|ref|YP_004809973.1|	-	0.023	14.7	0.1	0.12	12.3	0.0	2.0	2	0	0	2	2	2	0	Crp-like	helix-turn-helix	domain
HTH_10	PF04967.12	gi|345007121|ref|YP_004809973.1|	-	0.03	14.1	0.0	0.065	13.0	0.0	1.5	1	0	0	1	1	1	0	HTH	DNA	binding	domain
Fur_reg_FbpB	PF13040.6	gi|345007121|ref|YP_004809973.1|	-	0.04	13.5	0.9	0.091	12.3	0.9	1.6	1	0	0	1	1	1	0	Fur-regulated	basic	protein	B
P2	PF07194.11	gi|345007121|ref|YP_004809973.1|	-	0.056	13.5	0.5	1.2	9.3	0.0	2.6	1	1	2	3	3	3	0	P2	response	regulator	binding	domain
HTH_27	PF13463.6	gi|345007121|ref|YP_004809973.1|	-	0.067	13.7	0.0	0.19	12.2	0.0	1.7	2	0	0	2	2	2	0	Winged	helix	DNA-binding	domain
PLU-1	PF08429.11	gi|345007121|ref|YP_004809973.1|	-	0.072	12.3	0.2	0.1	11.8	0.2	1.1	1	0	0	1	1	1	0	PLU-1-like	protein
AsnC_trans_reg2	PF17805.1	gi|345007121|ref|YP_004809973.1|	-	0.084	13.0	0.0	0.21	11.8	0.0	1.7	2	0	0	2	2	2	0	AsnC-like	ligand	binding	domain
HTH_36	PF13730.6	gi|345007121|ref|YP_004809973.1|	-	0.086	12.8	0.0	0.23	11.4	0.0	1.8	2	0	0	2	2	2	0	Helix-turn-helix	domain
HTH_CodY	PF08222.11	gi|345007121|ref|YP_004809973.1|	-	0.12	12.0	0.1	0.21	11.2	0.1	1.3	1	0	0	1	1	1	0	CodY	helix-turn-helix	domain
HalOD1	PF18545.1	gi|345007122|ref|YP_004809974.1|	-	5.7e-26	90.6	0.4	6.6e-26	90.4	0.4	1.1	1	0	0	1	1	1	1	Halobacterial	output	domain	1
DDE_Tnp_1	PF01609.21	gi|345007123|ref|YP_004809975.1|	-	2.3e-15	56.8	4.5	1.1e-14	54.6	4.5	2.0	1	1	0	1	1	1	1	Transposase	DDE	domain
DDE_Tnp_1_2	PF13586.6	gi|345007123|ref|YP_004809975.1|	-	0.0098	16.3	0.8	0.021	15.2	0.4	1.8	2	0	0	2	2	2	1	Transposase	DDE	domain
HalOD1	PF18545.1	gi|345007124|ref|YP_004809976.1|	-	6.4e-14	52.0	0.2	7e-14	51.9	0.2	1.0	1	0	0	1	1	1	1	Halobacterial	output	domain	1
HATPase_c	PF02518.26	gi|345007125|ref|YP_004809977.1|	-	1.7e-13	51.0	0.1	5.7e-13	49.4	0.0	1.8	2	0	0	2	2	2	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HisKA	PF00512.25	gi|345007125|ref|YP_004809977.1|	-	2.1e-10	40.5	1.4	5.1e-10	39.3	1.4	1.7	1	0	0	1	1	1	1	His	Kinase	A	(phospho-acceptor)	domain
PAS_4	PF08448.10	gi|345007125|ref|YP_004809977.1|	-	7.4e-08	32.6	0.1	1.5e-07	31.6	0.1	1.6	1	0	0	1	1	1	1	PAS	fold
SPOB_a	PF14689.6	gi|345007125|ref|YP_004809977.1|	-	0.0018	18.0	0.5	0.0034	17.1	0.5	1.5	1	0	0	1	1	1	1	Sensor_kinase_SpoOB-type,	alpha-helical	domain
PAS_9	PF13426.7	gi|345007125|ref|YP_004809977.1|	-	0.0058	16.9	0.0	0.015	15.6	0.0	1.7	1	0	0	1	1	1	1	PAS	domain
DUF3562	PF12085.8	gi|345007125|ref|YP_004809977.1|	-	0.047	13.3	0.0	0.13	11.9	0.0	1.8	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3562)
DDE_Tnp_1	PF01609.21	gi|345007126|ref|YP_004809978.1|	-	0.032	13.9	0.1	0.089	12.4	0.1	1.7	1	1	0	1	1	1	0	Transposase	DDE	domain
Response_reg	PF00072.24	gi|345007127|ref|YP_004809979.1|	-	1.3e-23	83.3	0.0	1.6e-23	83.0	0.0	1.2	1	0	0	1	1	1	1	Response	regulator	receiver	domain
HTH_20	PF12840.7	gi|345007128|ref|YP_004809980.1|	-	1.2e-06	28.5	0.1	1.9e-06	27.8	0.1	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
MarR_2	PF12802.7	gi|345007128|ref|YP_004809980.1|	-	2.5e-06	27.3	0.1	4.5e-06	26.5	0.1	1.3	1	0	0	1	1	1	1	MarR	family
HTH_Crp_2	PF13545.6	gi|345007128|ref|YP_004809980.1|	-	4.8e-06	26.5	0.0	7e-06	25.9	0.0	1.3	1	0	0	1	1	1	1	Crp-like	helix-turn-helix	domain
TrmB	PF01978.19	gi|345007128|ref|YP_004809980.1|	-	9.2e-06	25.5	0.0	2.2e-05	24.3	0.0	1.6	1	1	1	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_24	PF13412.6	gi|345007128|ref|YP_004809980.1|	-	1.4e-05	24.6	0.0	2.4e-05	23.8	0.0	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_IclR	PF09339.10	gi|345007128|ref|YP_004809980.1|	-	6.6e-05	22.6	0.1	0.00014	21.6	0.1	1.5	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
HxlR	PF01638.17	gi|345007128|ref|YP_004809980.1|	-	9.1e-05	22.2	0.0	0.00012	21.8	0.0	1.2	1	0	0	1	1	1	1	HxlR-like	helix-turn-helix
HTH_34	PF13601.6	gi|345007128|ref|YP_004809980.1|	-	0.0025	18.0	0.0	0.0034	17.5	0.0	1.2	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
HTH_23	PF13384.6	gi|345007128|ref|YP_004809980.1|	-	0.0042	16.9	0.0	0.0076	16.0	0.0	1.5	1	0	0	1	1	1	1	Homeodomain-like	domain
Replic_Relax	PF13814.6	gi|345007128|ref|YP_004809980.1|	-	0.014	15.5	0.0	0.017	15.2	0.0	1.1	1	0	0	1	1	1	0	Replication-relaxation
GntR	PF00392.21	gi|345007128|ref|YP_004809980.1|	-	0.015	15.0	0.0	0.03	14.0	0.0	1.4	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	gntR	family
Rrf2	PF02082.20	gi|345007128|ref|YP_004809980.1|	-	0.018	15.4	0.0	0.032	14.6	0.0	1.4	1	0	0	1	1	1	0	Transcriptional	regulator
HTH_27	PF13463.6	gi|345007128|ref|YP_004809980.1|	-	0.02	15.3	0.1	0.046	14.2	0.0	1.6	2	0	0	2	2	1	0	Winged	helix	DNA-binding	domain
PadR	PF03551.14	gi|345007128|ref|YP_004809980.1|	-	0.036	14.0	0.0	0.059	13.3	0.0	1.3	1	0	0	1	1	1	0	Transcriptional	regulator	PadR-like	family
Crp	PF00325.20	gi|345007128|ref|YP_004809980.1|	-	0.04	13.6	0.0	0.073	12.7	0.0	1.5	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	crp	family
HTH_29	PF13551.6	gi|345007128|ref|YP_004809980.1|	-	0.04	13.9	0.0	0.088	12.8	0.0	1.5	1	1	0	1	1	1	0	Winged	helix-turn	helix
DUF4364	PF14277.6	gi|345007128|ref|YP_004809980.1|	-	0.046	13.5	0.0	0.072	12.8	0.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4364)
DUF1495	PF07381.11	gi|345007128|ref|YP_004809980.1|	-	0.048	13.5	0.2	0.84	9.5	0.2	2.2	1	1	0	1	1	1	0	Winged	helix	DNA-binding	domain	(DUF1495)
MarR	PF01047.22	gi|345007128|ref|YP_004809980.1|	-	0.073	13.0	0.0	0.12	12.3	0.0	1.3	1	0	0	1	1	1	0	MarR	family
TFIIE_alpha	PF02002.17	gi|345007128|ref|YP_004809980.1|	-	0.08	12.8	0.0	0.14	12.1	0.0	1.4	1	0	0	1	1	1	0	TFIIE	alpha	subunit
HTH_45	PF14947.6	gi|345007128|ref|YP_004809980.1|	-	0.081	12.9	0.0	0.11	12.5	0.0	1.2	1	0	0	1	1	1	0	Winged	helix-turn-helix
DUF2250	PF10007.9	gi|345007128|ref|YP_004809980.1|	-	0.14	12.3	0.1	11	6.2	0.0	2.2	1	1	1	2	2	2	0	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
Dcc1	PF09724.9	gi|345007128|ref|YP_004809980.1|	-	0.15	11.3	0.0	0.19	11.0	0.0	1.1	1	0	0	1	1	1	0	Sister	chromatid	cohesion	protein	Dcc1
DDE_Tnp_1	PF01609.21	gi|345007129|ref|YP_004809981.1|	-	0.032	13.9	0.1	0.089	12.4	0.1	1.7	1	1	0	1	1	1	0	Transposase	DDE	domain
ApoLp-III	PF07464.11	gi|345007130|ref|YP_004809982.1|	-	0.028	14.5	0.7	0.055	13.6	0.7	1.5	1	0	0	1	1	1	0	Apolipophorin-III	precursor	(apoLp-III)
RNA_pol_Rpb2_4	PF04566.13	gi|345007130|ref|YP_004809982.1|	-	0.091	13.1	0.1	0.23	11.8	0.0	1.7	2	0	0	2	2	2	0	RNA	polymerase	Rpb2,	domain	4
FUSC	PF04632.12	gi|345007130|ref|YP_004809982.1|	-	3.6	6.0	10.3	4.5	5.7	10.3	1.2	1	0	0	1	1	1	0	Fusaric	acid	resistance	protein	family
Syntaxin-6_N	PF09177.11	gi|345007130|ref|YP_004809982.1|	-	4.3	8.0	10.9	0.42	11.2	2.5	2.5	1	1	1	2	2	2	0	Syntaxin	6,	N-terminal
Spt4	PF06093.13	gi|345007131|ref|YP_004809983.1|	-	0.012	15.7	0.4	0.068	13.3	0.1	2.1	2	0	0	2	2	2	0	Spt4/RpoE2	zinc	finger
zinc_ribbon_2	PF13240.6	gi|345007131|ref|YP_004809983.1|	-	0.025	14.3	2.7	0.025	14.3	2.7	2.9	3	0	0	3	3	3	0	zinc-ribbon	domain
Zf_RING	PF16744.5	gi|345007131|ref|YP_004809983.1|	-	0.45	10.7	3.9	14	5.9	0.0	3.3	4	0	0	4	4	4	0	KIAA1045	RING	finger
zinc_ribbon_15	PF17032.5	gi|345007131|ref|YP_004809983.1|	-	0.85	10.4	7.3	6	7.7	0.5	2.7	2	1	0	3	3	3	0	zinc-ribbon	family
DZR	PF12773.7	gi|345007131|ref|YP_004809983.1|	-	1.1	9.4	9.0	2.3	8.3	1.5	2.6	2	1	0	2	2	2	0	Double	zinc	ribbon
RNA_POL_M_15KD	PF02150.16	gi|345007131|ref|YP_004809983.1|	-	4.2	7.3	9.8	12	5.9	0.2	3.6	3	1	0	3	3	3	0	RNA	polymerases	M/15	Kd	subunit
TrmB	PF01978.19	gi|345007134|ref|YP_004809986.1|	-	1.5e-09	37.6	0.3	7.1e-09	35.4	0.0	2.0	2	0	0	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_11	PF08279.12	gi|345007134|ref|YP_004809986.1|	-	6.7e-05	22.7	0.1	0.00019	21.3	0.0	1.8	2	0	0	2	2	2	1	HTH	domain
HTH_DeoR	PF08220.12	gi|345007134|ref|YP_004809986.1|	-	0.00026	20.7	0.0	0.00067	19.3	0.0	1.7	1	0	0	1	1	1	1	DeoR-like	helix-turn-helix	domain
MarR	PF01047.22	gi|345007134|ref|YP_004809986.1|	-	0.0014	18.6	0.0	0.004	17.1	0.0	1.8	2	0	0	2	2	2	1	MarR	family
HTH_IclR	PF09339.10	gi|345007134|ref|YP_004809986.1|	-	0.0045	16.8	0.1	0.013	15.3	0.0	1.8	2	0	0	2	2	2	1	IclR	helix-turn-helix	domain
HTH_20	PF12840.7	gi|345007134|ref|YP_004809986.1|	-	0.0056	16.7	0.6	0.012	15.6	0.1	1.8	2	0	0	2	2	2	1	Helix-turn-helix	domain
GntR	PF00392.21	gi|345007134|ref|YP_004809986.1|	-	0.0073	15.9	0.6	0.035	13.8	0.0	2.1	2	0	0	2	2	2	1	Bacterial	regulatory	proteins,	gntR	family
DUF2250	PF10007.9	gi|345007134|ref|YP_004809986.1|	-	0.0078	16.3	0.1	0.84	9.8	0.0	2.3	2	0	0	2	2	2	1	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
Penicillinase_R	PF03965.16	gi|345007134|ref|YP_004809986.1|	-	0.018	15.4	0.0	0.044	14.1	0.0	1.7	1	0	0	1	1	1	0	Penicillinase	repressor
ORC5_C	PF14630.6	gi|345007134|ref|YP_004809986.1|	-	0.028	13.9	0.0	0.039	13.5	0.0	1.3	1	0	0	1	1	1	0	Origin	recognition	complex	(ORC)	subunit	5	C-terminus
Mga	PF05043.13	gi|345007134|ref|YP_004809986.1|	-	0.064	13.9	0.0	0.17	12.5	0.0	1.7	1	0	0	1	1	1	0	Mga	helix-turn-helix	domain
Fe_dep_repress	PF01325.19	gi|345007134|ref|YP_004809986.1|	-	0.087	13.0	0.0	0.18	12.0	0.0	1.5	1	0	0	1	1	1	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
PIN_12	PF16289.5	gi|345007135|ref|YP_004809987.1|	-	0.026	15.0	0.1	2	8.9	0.1	2.1	2	0	0	2	2	2	0	PIN	domain
RPA_interact_C	PF14768.6	gi|345007136|ref|YP_004809988.1|	-	0.0044	17.5	0.5	0.0059	17.2	0.5	1.2	1	0	0	1	1	1	1	Replication	protein	A	interacting	C-terminal
zinc_ribbon_2	PF13240.6	gi|345007136|ref|YP_004809988.1|	-	0.012	15.3	1.0	3.8	7.3	0.1	2.4	2	0	0	2	2	2	0	zinc-ribbon	domain
Nudix_N_2	PF14803.6	gi|345007136|ref|YP_004809988.1|	-	0.013	15.4	2.8	2.1	8.4	0.1	2.7	3	0	0	3	3	3	0	Nudix	N-terminal
DUF2318	PF10080.9	gi|345007136|ref|YP_004809988.1|	-	0.018	15.2	0.1	0.022	14.8	0.1	1.2	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2318)
DZR	PF12773.7	gi|345007136|ref|YP_004809988.1|	-	0.019	15.0	0.6	0.029	14.4	0.6	1.3	1	0	0	1	1	1	0	Double	zinc	ribbon
GFA	PF04828.14	gi|345007136|ref|YP_004809988.1|	-	0.041	14.2	1.4	0.8	10.1	0.1	2.2	1	1	1	2	2	2	0	Glutathione-dependent	formaldehyde-activating	enzyme
DpnI	PF06044.12	gi|345007136|ref|YP_004809988.1|	-	0.096	12.3	0.4	0.13	11.9	0.4	1.2	1	0	0	1	1	1	0	Dam-replacing	family
Zn-ribbon_8	PF09723.10	gi|345007136|ref|YP_004809988.1|	-	0.2	11.8	1.2	18	5.6	0.4	2.4	2	0	0	2	2	2	0	Zinc	ribbon	domain
DNA_ligase_ZBD	PF03119.16	gi|345007136|ref|YP_004809988.1|	-	0.28	11.3	4.4	0.69	10.0	0.4	2.4	2	0	0	2	2	2	0	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
PG_binding_1	PF01471.18	gi|345007137|ref|YP_004809989.1|	-	0.057	13.6	0.0	0.1	12.8	0.0	1.4	1	0	0	1	1	1	0	Putative	peptidoglycan	binding	domain
PHM7_cyt	PF14703.6	gi|345007138|ref|YP_004809990.1|	-	0.13	12.5	0.1	0.15	12.3	0.1	1.0	1	0	0	1	1	1	0	Cytosolic	domain	of	10TM	putative	phosphate	transporter
TAT_signal	PF10518.9	gi|345007139|ref|YP_004809991.1|	-	0.016	15.0	1.9	0.028	14.3	1.9	1.4	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
DUF5057	PF16480.5	gi|345007139|ref|YP_004809991.1|	-	0.03	13.7	1.7	0.035	13.5	1.7	1.0	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF5057)
F-box	PF00646.33	gi|345007139|ref|YP_004809991.1|	-	0.043	13.7	0.0	0.077	12.9	0.0	1.4	1	0	0	1	1	1	0	F-box	domain
RNA_pol_Rpa2_4	PF06883.12	gi|345007139|ref|YP_004809991.1|	-	0.19	11.8	0.1	0.34	10.9	0.1	1.4	1	0	0	1	1	1	0	RNA	polymerase	I,	Rpa2	specific	domain
DDE_Tnp_1	PF01609.21	gi|345007141|ref|YP_004809993.1|	-	0.031	13.9	0.1	0.085	12.5	0.1	1.7	1	1	0	1	1	1	0	Transposase	DDE	domain
DDE_Tnp_1	PF01609.21	gi|345007142|ref|YP_004809994.1|	-	0.031	13.9	0.1	0.085	12.5	0.1	1.7	1	1	0	1	1	1	0	Transposase	DDE	domain
Methyltransf_21	PF05050.12	gi|345007143|ref|YP_004809995.1|	-	1.7e-19	70.5	0.1	2.5e-19	69.9	0.1	1.2	1	0	0	1	1	1	1	Methyltransferase	FkbM	domain
Met_10	PF02475.16	gi|345007143|ref|YP_004809995.1|	-	9e-07	28.8	0.0	1.6e-06	28.0	0.0	1.4	1	0	0	1	1	1	1	Met-10+	like-protein
V_cholerae_RfbT	PF05575.11	gi|345007143|ref|YP_004809995.1|	-	2.4e-05	23.7	0.1	3.9e-05	23.1	0.1	1.3	1	1	0	1	1	1	1	Vibrio	cholerae	RfbT	protein
Methyltransf_18	PF12847.7	gi|345007143|ref|YP_004809995.1|	-	0.017	15.1	0.0	0.029	14.3	0.0	1.3	1	0	0	1	1	1	0	Methyltransferase	domain
Glyco_transf_4	PF13439.6	gi|345007144|ref|YP_004809996.1|	-	3.1e-11	43.6	0.0	3.9e-11	43.2	0.0	1.1	1	0	0	1	1	1	1	Glycosyltransferase	Family	4
Glyco_trans_4_4	PF13579.6	gi|345007144|ref|YP_004809996.1|	-	6.4e-11	42.9	0.0	1e-10	42.3	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	transferase	4-like	domain
Glycos_transf_1	PF00534.20	gi|345007144|ref|YP_004809996.1|	-	1e-05	25.1	0.0	1.5e-05	24.6	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.6	gi|345007144|ref|YP_004809996.1|	-	2.6e-05	24.7	0.0	5.1e-05	23.7	0.0	1.5	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
DUF2110	PF09883.9	gi|345007144|ref|YP_004809996.1|	-	0.21	11.1	0.0	0.27	10.8	0.0	1.1	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	archaea	(DUF2110)
DDE_Tnp_1	PF01609.21	gi|345007145|ref|YP_004809997.1|	-	0.031	13.9	0.1	0.085	12.5	0.1	1.7	1	1	0	1	1	1	0	Transposase	DDE	domain
PI3K_P85_iSH2	PF16454.5	gi|345007146|ref|YP_004809998.1|	-	0.00064	19.3	0.0	0.00087	18.9	0.0	1.2	1	0	0	1	1	1	1	Phosphatidylinositol	3-kinase	regulatory	subunit	P85	inter-SH2	domain
Ribosomal_S5_C	PF03719.15	gi|345007146|ref|YP_004809998.1|	-	0.15	11.5	0.0	0.22	11.0	0.0	1.1	1	0	0	1	1	1	0	Ribosomal	protein	S5,	C-terminal	domain
HTH_27	PF13463.6	gi|345007147|ref|YP_004809999.1|	-	0.0072	16.8	0.1	0.0087	16.5	0.1	1.1	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
HTH_24	PF13412.6	gi|345007147|ref|YP_004809999.1|	-	0.016	14.8	0.5	0.018	14.6	0.5	1.2	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
B-block_TFIIIC	PF04182.12	gi|345007147|ref|YP_004809999.1|	-	0.036	14.2	0.1	0.04	14.1	0.1	1.1	1	0	0	1	1	1	0	B-block	binding	subunit	of	TFIIIC
HTH_45	PF14947.6	gi|345007147|ref|YP_004809999.1|	-	0.045	13.7	0.2	0.049	13.6	0.2	1.1	1	0	0	1	1	1	0	Winged	helix-turn-helix
MarR_2	PF12802.7	gi|345007147|ref|YP_004809999.1|	-	0.059	13.3	0.0	0.065	13.1	0.0	1.1	1	0	0	1	1	1	0	MarR	family
GntR	PF00392.21	gi|345007148|ref|YP_004810000.1|	-	0.0017	18.0	0.0	0.0032	17.1	0.0	1.4	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	gntR	family
HTH_5	PF01022.20	gi|345007148|ref|YP_004810000.1|	-	0.0022	17.8	0.0	0.0037	17.1	0.0	1.3	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
MarR_2	PF12802.7	gi|345007148|ref|YP_004810000.1|	-	0.0064	16.4	0.3	0.012	15.5	0.3	1.4	1	0	0	1	1	1	1	MarR	family
HTH_20	PF12840.7	gi|345007148|ref|YP_004810000.1|	-	0.019	15.0	0.3	0.06	13.4	0.3	1.8	1	0	0	1	1	1	0	Helix-turn-helix	domain
TrmB	PF01978.19	gi|345007148|ref|YP_004810000.1|	-	0.12	12.3	0.0	0.23	11.4	0.0	1.4	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
UBA_4	PF14555.6	gi|345007149|ref|YP_004810001.1|	-	0.064	13.1	0.1	1.9	8.3	0.0	2.4	2	0	0	2	2	2	0	UBA-like	domain
DUF4177	PF13783.6	gi|345007150|ref|YP_004810002.1|	-	2.2e-11	43.9	0.0	2.5e-11	43.7	0.0	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4177)
DUF456	PF04306.13	gi|345007151|ref|YP_004810003.1|	-	0.0056	17.0	3.3	0.0071	16.6	3.3	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF456)
Tad	PF13400.6	gi|345007151|ref|YP_004810003.1|	-	0.07	13.4	0.7	0.07	13.4	0.7	1.8	2	0	0	2	2	2	0	Putative	Flp	pilus-assembly	TadE/G-like
DUF3974	PF13120.6	gi|345007151|ref|YP_004810003.1|	-	1.7	8.8	3.8	1.3	9.2	3.0	1.3	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF3974)
S1FA	PF04689.13	gi|345007151|ref|YP_004810003.1|	-	9.4	6.5	7.7	8.9	6.5	0.9	2.0	1	1	1	2	2	2	0	DNA	binding	protein	S1FA
DDE_Tnp_1	PF01609.21	gi|345007152|ref|YP_004810004.1|	-	6.9e-33	114.1	0.3	9e-33	113.7	0.3	1.2	1	0	0	1	1	1	1	Transposase	DDE	domain
DDE_Tnp_1_4	PF13701.6	gi|345007152|ref|YP_004810004.1|	-	0.0083	14.4	0.1	0.028	12.7	0.0	1.7	1	1	1	2	2	2	1	Transposase	DDE	domain	group	1
Corona_3	PF04694.12	gi|345007152|ref|YP_004810004.1|	-	0.043	14.2	0.0	0.11	12.9	0.0	1.6	1	0	0	1	1	1	0	Coronavirus	ORF3	protein
Piwi	PF02171.17	gi|345007156|ref|YP_004810008.1|	-	0.0015	17.9	0.0	0.0033	16.7	0.0	1.5	2	0	0	2	2	2	1	Piwi	domain
DDE_Tnp_1	PF01609.21	gi|345007158|ref|YP_004810010.1|	-	0.027	14.1	0.1	0.14	11.8	0.0	2.1	1	1	0	1	1	1	0	Transposase	DDE	domain
Helicase_C	PF00271.31	gi|345007159|ref|YP_004810011.1|	-	1.3e-15	57.7	0.0	3.4e-15	56.4	0.0	1.8	1	0	0	1	1	1	1	Helicase	conserved	C-terminal	domain
SNF2_N	PF00176.23	gi|345007159|ref|YP_004810011.1|	-	2.9e-12	46.0	0.0	1.3e-11	43.8	0.0	1.9	2	0	0	2	2	2	1	SNF2	family	N-terminal	domain
PLDc_2	PF13091.6	gi|345007159|ref|YP_004810011.1|	-	5.7e-09	36.0	0.0	1.3e-08	34.8	0.0	1.7	1	0	0	1	1	1	1	PLD-like	domain
ResIII	PF04851.15	gi|345007159|ref|YP_004810011.1|	-	0.00055	20.0	0.0	0.0023	18.0	0.0	2.1	1	1	0	1	1	1	1	Type	III	restriction	enzyme,	res	subunit
ABC_tran_CTD	PF16326.5	gi|345007159|ref|YP_004810011.1|	-	3	8.2	7.0	0.71	10.2	0.3	3.4	3	0	0	3	3	3	0	ABC	transporter	C-terminal	domain
DUF1156	PF06634.12	gi|345007160|ref|YP_004810012.1|	-	1.2e-06	28.6	0.2	2.9e-06	27.3	0.2	1.7	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1156)
N6_N4_Mtase	PF01555.18	gi|345007160|ref|YP_004810012.1|	-	1.4e-05	25.0	0.0	3.2e-05	23.8	0.0	1.6	1	0	0	1	1	1	1	DNA	methylase
Methyltransf_11	PF08241.12	gi|345007160|ref|YP_004810012.1|	-	0.089	13.5	0.1	1.2	9.8	0.0	2.5	2	0	0	2	2	2	0	Methyltransferase	domain
DDE_Tnp_1	PF01609.21	gi|345007162|ref|YP_004810014.1|	-	0.031	13.9	0.1	0.085	12.5	0.1	1.7	1	1	0	1	1	1	0	Transposase	DDE	domain
Pyrid_ox_like	PF16242.5	gi|345007166|ref|YP_004810018.1|	-	0.076	12.6	0.1	0.12	12.0	0.1	1.3	1	0	0	1	1	1	0	Pyridoxamine	5'-phosphate	oxidase	like
Speriolin_C	PF15059.6	gi|345007166|ref|YP_004810018.1|	-	0.1	12.7	0.0	0.13	12.4	0.0	1.1	1	0	0	1	1	1	0	Speriolin	C-terminus
AAA_22	PF13401.6	gi|345007167|ref|YP_004810019.1|	-	1.3e-09	38.5	0.1	1.2e-08	35.3	0.0	2.1	2	0	0	2	2	2	1	AAA	domain
AAA_16	PF13191.6	gi|345007167|ref|YP_004810019.1|	-	2e-09	38.0	2.6	1.7e-08	35.0	0.1	2.9	1	1	1	2	2	2	1	AAA	ATPase	domain
AAA_assoc_2	PF16193.5	gi|345007167|ref|YP_004810019.1|	-	4.6e-07	30.1	3.9	0.00067	19.9	1.2	2.6	2	0	0	2	2	2	2	AAA	C-terminal	domain
AAA_18	PF13238.6	gi|345007167|ref|YP_004810019.1|	-	1.2e-05	25.9	0.1	9.7e-05	22.9	0.0	2.3	1	1	2	3	3	3	1	AAA	domain
Penicillinase_R	PF03965.16	gi|345007167|ref|YP_004810019.1|	-	1.9e-05	25.0	0.0	4.5e-05	23.8	0.0	1.6	1	0	0	1	1	1	1	Penicillinase	repressor
AAA_5	PF07728.14	gi|345007167|ref|YP_004810019.1|	-	0.00012	22.0	0.0	0.00052	20.0	0.0	2.1	1	1	0	1	1	1	1	AAA	domain	(dynein-related	subfamily)
NTPase_1	PF03266.15	gi|345007167|ref|YP_004810019.1|	-	0.00036	20.5	0.4	0.011	15.7	0.0	2.8	2	1	1	3	3	3	1	NTPase
AAA	PF00004.29	gi|345007167|ref|YP_004810019.1|	-	0.0006	20.2	0.0	0.0087	16.5	0.0	2.8	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_33	PF13671.6	gi|345007167|ref|YP_004810019.1|	-	0.0022	18.2	0.7	0.46	10.7	0.0	3.1	2	2	1	3	3	3	1	AAA	domain
NB-ARC	PF00931.22	gi|345007167|ref|YP_004810019.1|	-	0.0045	16.2	0.0	0.01	15.0	0.0	1.7	2	0	0	2	2	2	1	NB-ARC	domain
AAA_14	PF13173.6	gi|345007167|ref|YP_004810019.1|	-	0.0066	16.5	0.0	0.016	15.3	0.0	1.7	1	1	0	1	1	1	1	AAA	domain
ATPase_2	PF01637.18	gi|345007167|ref|YP_004810019.1|	-	0.0068	16.4	0.0	0.06	13.3	0.0	2.2	1	1	0	1	1	1	1	ATPase	domain	predominantly	from	Archaea
Cdc6_C	PF09079.11	gi|345007167|ref|YP_004810019.1|	-	0.0082	16.1	0.4	0.044	13.7	0.3	2.3	2	1	1	3	3	2	1	CDC6,	C	terminal	winged	helix	domain
DUF2075	PF09848.9	gi|345007167|ref|YP_004810019.1|	-	0.01	15.1	0.0	0.015	14.6	0.0	1.3	1	0	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2075)
NACHT	PF05729.12	gi|345007167|ref|YP_004810019.1|	-	0.015	15.2	0.1	0.034	14.1	0.0	1.6	2	0	0	2	2	1	0	NACHT	domain
PRK	PF00485.18	gi|345007167|ref|YP_004810019.1|	-	0.017	14.8	0.0	0.034	13.9	0.0	1.5	1	0	0	1	1	1	0	Phosphoribulokinase	/	Uridine	kinase	family
DUF4194	PF13835.6	gi|345007167|ref|YP_004810019.1|	-	0.02	14.7	0.0	0.05	13.3	0.0	1.7	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4194)
AAA_30	PF13604.6	gi|345007167|ref|YP_004810019.1|	-	0.039	13.7	0.5	0.16	11.7	0.0	2.2	2	1	0	2	2	2	0	AAA	domain
RNA_helicase	PF00910.22	gi|345007167|ref|YP_004810019.1|	-	0.05	14.0	0.0	0.13	12.7	0.0	1.8	1	1	0	1	1	1	0	RNA	helicase
IstB_IS21	PF01695.17	gi|345007167|ref|YP_004810019.1|	-	0.062	13.0	0.3	2.5	7.8	0.3	2.6	1	1	0	1	1	1	0	IstB-like	ATP	binding	protein
RsgA_GTPase	PF03193.16	gi|345007167|ref|YP_004810019.1|	-	0.067	13.1	0.0	0.13	12.1	0.0	1.5	1	0	0	1	1	1	0	RsgA	GTPase
RuvB_N	PF05496.12	gi|345007167|ref|YP_004810019.1|	-	0.086	12.6	0.0	0.21	11.3	0.0	1.8	1	1	0	1	1	1	0	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
ABC_tran	PF00005.27	gi|345007167|ref|YP_004810019.1|	-	0.15	12.6	0.0	1	9.9	0.0	2.4	1	1	1	2	2	2	0	ABC	transporter
SRAP	PF02586.14	gi|345007169|ref|YP_004810021.1|	-	3e-61	206.7	0.0	3.4e-61	206.6	0.0	1.0	1	0	0	1	1	1	1	SOS	response	associated	peptidase	(SRAP)
DDE_Tnp_1	PF01609.21	gi|345007170|ref|YP_004810022.1|	-	1.7e-15	57.3	5.6	6.8e-15	55.3	5.6	1.9	1	1	0	1	1	1	1	Transposase	DDE	domain
DUF772	PF05598.11	gi|345007170|ref|YP_004810022.1|	-	0.00046	20.2	0.6	0.0012	18.8	0.0	2.0	2	0	0	2	2	2	1	Transposase	domain	(DUF772)
DDE_Tnp_1_2	PF13586.6	gi|345007170|ref|YP_004810022.1|	-	0.0071	16.7	1.2	0.013	15.8	0.2	1.9	2	1	0	2	2	2	1	Transposase	DDE	domain
DDE_Tnp_1_6	PF13751.6	gi|345007170|ref|YP_004810022.1|	-	0.021	15.1	0.5	0.06	13.6	0.3	1.9	2	0	0	2	2	2	0	Transposase	DDE	domain
ArsP_1	PF03773.13	gi|345007171|ref|YP_004810023.1|	-	7.7e-57	192.7	15.3	1e-56	192.3	15.3	1.2	1	0	0	1	1	1	1	Predicted	permease
YHS	PF04945.13	gi|345007171|ref|YP_004810023.1|	-	3.1e-17	62.4	4.1	1.5e-11	44.2	0.4	2.4	2	0	0	2	2	2	2	YHS	domain
zf-FCS	PF06467.14	gi|345007171|ref|YP_004810023.1|	-	2.6e-05	24.1	0.3	0.083	12.8	0.0	2.4	2	0	0	2	2	2	2	MYM-type	Zinc	finger	with	FCS	sequence	motif
RPAP2_Rtr1	PF04181.13	gi|345007171|ref|YP_004810023.1|	-	0.031	14.6	0.2	5.5	7.4	0.0	2.3	2	0	0	2	2	2	0	Rtr1/RPAP2	family
zf-HIT	PF04438.16	gi|345007171|ref|YP_004810023.1|	-	0.06	13.2	0.3	0.23	11.4	0.0	2.0	2	0	0	2	2	2	0	HIT	zinc	finger
DUF2256	PF10013.9	gi|345007171|ref|YP_004810023.1|	-	1.1	9.4	3.1	16	5.7	0.2	2.7	3	0	0	3	3	3	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2256)
SHOCT	PF09851.9	gi|345007172|ref|YP_004810024.1|	-	1.2e-07	31.3	2.6	1.6e-07	30.8	2.6	1.2	1	0	0	1	1	1	1	Short	C-terminal	domain
DUF1707	PF08044.11	gi|345007172|ref|YP_004810024.1|	-	0.00012	22.1	1.8	0.00018	21.5	1.8	1.3	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1707)
Yip1	PF04893.17	gi|345007172|ref|YP_004810024.1|	-	0.0056	16.4	6.1	0.0065	16.2	6.1	1.1	1	0	0	1	1	1	1	Yip1	domain
DUF4381	PF14316.6	gi|345007172|ref|YP_004810024.1|	-	0.24	11.6	2.6	0.82	9.9	0.0	2.0	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4381)
Halogen_Hydrol	PF10112.9	gi|345007172|ref|YP_004810024.1|	-	0.58	10.1	2.1	2.4	8.1	2.1	1.8	1	1	0	1	1	1	0	5-bromo-4-chloroindolyl	phosphate	hydrolysis	protein
DUF2207	PF09972.9	gi|345007172|ref|YP_004810024.1|	-	0.96	8.1	2.8	1.2	7.8	2.8	1.1	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2207)
DDE_Tnp_1	PF01609.21	gi|345007173|ref|YP_004810025.1|	-	0.027	14.1	0.1	0.14	11.8	0.0	2.1	1	1	0	1	1	1	0	Transposase	DDE	domain
DDE_Tnp_1	PF01609.21	gi|345007174|ref|YP_004810026.1|	-	2.6e-11	43.6	0.5	4.6e-11	42.8	0.5	1.3	1	0	0	1	1	1	1	Transposase	DDE	domain
DUF772	PF05598.11	gi|345007174|ref|YP_004810026.1|	-	0.00048	20.1	0.1	0.0011	18.9	0.1	1.6	1	0	0	1	1	1	1	Transposase	domain	(DUF772)
DDE_Tnp_1_3	PF13612.6	gi|345007174|ref|YP_004810026.1|	-	0.07	13.1	0.1	0.11	12.5	0.1	1.3	1	0	0	1	1	1	0	Transposase	DDE	domain
CorA	PF01544.18	gi|345007177|ref|YP_004810029.1|	-	0.041	13.2	1.8	0.045	13.1	1.8	1.0	1	0	0	1	1	1	0	CorA-like	Mg2+	transporter	protein
MutL_C	PF08676.11	gi|345007177|ref|YP_004810029.1|	-	0.053	13.3	0.2	0.07	12.9	0.2	1.1	1	0	0	1	1	1	0	MutL	C	terminal	dimerisation	domain
PSK_trans_fac	PF07704.11	gi|345007177|ref|YP_004810029.1|	-	1.3	9.8	9.8	0.26	12.1	1.3	2.1	1	1	1	2	2	2	0	Rv0623-like	transcription	factor
PKcGMP_CC	PF16808.5	gi|345007177|ref|YP_004810029.1|	-	1.5	8.7	7.6	1.5	8.7	1.7	2.2	2	0	0	2	2	2	0	Coiled-coil	N-terminus	of	cGMP-dependent	protein	kinase
DNA_pol_B	PF00136.21	gi|345007178|ref|YP_004810030.1|	-	3.5e-25	88.6	0.0	8.4e-25	87.4	0.0	1.5	1	1	0	1	1	1	1	DNA	polymerase	family	B
DUF465	PF04325.13	gi|345007178|ref|YP_004810030.1|	-	0.83	9.7	4.3	13	5.9	1.7	2.5	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF465)
Cdc6_C	PF09079.11	gi|345007179|ref|YP_004810031.1|	-	1e-13	51.1	0.0	2.3e-13	49.9	0.0	1.6	1	0	0	1	1	1	1	CDC6,	C	terminal	winged	helix	domain
AAA_22	PF13401.6	gi|345007179|ref|YP_004810031.1|	-	3.2e-11	43.7	0.0	1.4e-10	41.6	0.0	1.9	2	0	0	2	2	2	1	AAA	domain
AAA_16	PF13191.6	gi|345007179|ref|YP_004810031.1|	-	1.9e-07	31.6	0.0	5.2e-07	30.2	0.0	1.8	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA	PF00004.29	gi|345007179|ref|YP_004810031.1|	-	1.5e-05	25.4	0.0	5.4e-05	23.6	0.0	2.0	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
DUF815	PF05673.13	gi|345007179|ref|YP_004810031.1|	-	0.0041	16.3	0.0	0.0063	15.7	0.0	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF815)
AAA_5	PF07728.14	gi|345007179|ref|YP_004810031.1|	-	0.006	16.6	0.0	0.42	10.6	0.0	2.5	2	0	0	2	2	2	1	AAA	domain	(dynein-related	subfamily)
Sigma54_activat	PF00158.26	gi|345007179|ref|YP_004810031.1|	-	0.0062	16.3	0.0	0.012	15.3	0.0	1.5	1	0	0	1	1	1	1	Sigma-54	interaction	domain
ResIII	PF04851.15	gi|345007179|ref|YP_004810031.1|	-	0.052	13.6	0.0	0.17	11.9	0.0	1.7	2	0	0	2	2	2	0	Type	III	restriction	enzyme,	res	subunit
RuvB_N	PF05496.12	gi|345007179|ref|YP_004810031.1|	-	0.066	12.9	0.0	0.55	10.0	0.0	2.1	2	0	0	2	2	2	0	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
TniB	PF05621.11	gi|345007179|ref|YP_004810031.1|	-	0.067	12.6	0.0	0.18	11.2	0.0	1.7	1	1	0	1	1	1	0	Bacterial	TniB	protein
AAA_7	PF12775.7	gi|345007179|ref|YP_004810031.1|	-	0.088	12.3	0.0	0.16	11.5	0.0	1.4	1	0	0	1	1	1	0	P-loop	containing	dynein	motor	region
RNA_helicase	PF00910.22	gi|345007179|ref|YP_004810031.1|	-	0.11	12.9	0.0	0.4	11.1	0.0	2.1	1	0	0	1	1	1	0	RNA	helicase
TsaE	PF02367.17	gi|345007179|ref|YP_004810031.1|	-	0.12	12.4	0.0	0.24	11.4	0.0	1.4	1	0	0	1	1	1	0	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
NACHT	PF05729.12	gi|345007179|ref|YP_004810031.1|	-	0.14	12.0	0.0	0.25	11.2	0.0	1.4	1	0	0	1	1	1	0	NACHT	domain
alpha-hel2	PF14456.6	gi|345007181|ref|YP_004810033.1|	-	0.056	12.7	1.0	0.068	12.5	1.0	1.1	1	0	0	1	1	1	0	Alpha-helical	domain	2
CSTF2_hinge	PF14327.6	gi|345007181|ref|YP_004810033.1|	-	0.13	12.7	0.0	0.21	12.1	0.0	1.2	1	0	0	1	1	1	0	Hinge	domain	of	cleavage	stimulation	factor	subunit	2
DUF2274	PF10038.9	gi|345007181|ref|YP_004810033.1|	-	0.15	12.5	1.5	3.6	8.1	0.2	2.2	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2274)
MarR_2	PF12802.7	gi|345007182|ref|YP_004810034.1|	-	8.5e-15	54.4	1.8	6e-08	32.5	0.8	2.7	2	0	0	2	2	2	2	MarR	family
TrmB	PF01978.19	gi|345007182|ref|YP_004810034.1|	-	2.1e-09	37.1	0.3	0.00034	20.4	0.0	2.7	2	0	0	2	2	2	2	Sugar-specific	transcriptional	regulator	TrmB
HTH_24	PF13412.6	gi|345007182|ref|YP_004810034.1|	-	4.7e-09	35.7	0.1	0.0025	17.3	0.0	2.5	2	0	0	2	2	2	2	Winged	helix-turn-helix	DNA-binding
Rrf2	PF02082.20	gi|345007182|ref|YP_004810034.1|	-	1.3e-07	31.8	0.0	0.021	15.1	0.0	2.6	2	0	0	2	2	2	2	Transcriptional	regulator
MarR	PF01047.22	gi|345007182|ref|YP_004810034.1|	-	1.9e-07	30.9	0.0	0.009	15.9	0.1	2.5	2	0	0	2	2	2	2	MarR	family
HTH_23	PF13384.6	gi|345007182|ref|YP_004810034.1|	-	1.2e-06	28.2	1.2	0.013	15.2	0.0	3.2	3	0	0	3	3	3	2	Homeodomain-like	domain
HTH_Crp_2	PF13545.6	gi|345007182|ref|YP_004810034.1|	-	1.3e-06	28.3	0.0	0.00094	19.1	0.0	2.5	2	0	0	2	2	2	2	Crp-like	helix-turn-helix	domain
HTH_IclR	PF09339.10	gi|345007182|ref|YP_004810034.1|	-	1.5e-06	27.9	0.2	0.079	12.8	0.0	2.9	3	0	0	3	3	2	2	IclR	helix-turn-helix	domain
HTH_27	PF13463.6	gi|345007182|ref|YP_004810034.1|	-	1.9e-06	28.3	1.0	1.3e-05	25.6	0.4	2.3	2	0	0	2	2	2	1	Winged	helix	DNA-binding	domain
HTH_20	PF12840.7	gi|345007182|ref|YP_004810034.1|	-	2.2e-06	27.6	0.3	0.06	13.4	0.0	2.7	2	0	0	2	2	2	2	Helix-turn-helix	domain
HTH_29	PF13551.6	gi|345007182|ref|YP_004810034.1|	-	5.7e-06	26.2	0.3	0.057	13.5	0.0	2.7	2	0	0	2	2	2	2	Winged	helix-turn	helix
HTH_28	PF13518.6	gi|345007182|ref|YP_004810034.1|	-	4.7e-05	23.4	1.3	0.031	14.4	0.0	3.1	3	0	0	3	3	3	1	Helix-turn-helix	domain
HTH_5	PF01022.20	gi|345007182|ref|YP_004810034.1|	-	0.00064	19.5	0.0	1.5	8.7	0.0	2.5	2	0	0	2	2	2	2	Bacterial	regulatory	protein,	arsR	family
GntR	PF00392.21	gi|345007182|ref|YP_004810034.1|	-	0.0013	18.4	0.0	2.5	7.8	0.0	2.6	2	0	0	2	2	2	2	Bacterial	regulatory	proteins,	gntR	family
DUF746	PF05344.11	gi|345007182|ref|YP_004810034.1|	-	0.0017	18.1	0.0	0.0048	16.7	0.0	1.8	2	0	0	2	2	1	1	Domain	of	Unknown	Function	(DUF746)
Penicillinase_R	PF03965.16	gi|345007182|ref|YP_004810034.1|	-	0.002	18.5	0.0	2.1	8.7	0.0	2.5	1	1	1	2	2	2	2	Penicillinase	repressor
HTH_38	PF13936.6	gi|345007182|ref|YP_004810034.1|	-	0.0033	17.2	2.4	2.9	7.7	0.0	3.3	3	0	0	3	3	3	1	Helix-turn-helix	domain
Crp	PF00325.20	gi|345007182|ref|YP_004810034.1|	-	0.0051	16.4	0.4	0.025	14.2	0.3	2.1	2	0	0	2	2	2	1	Bacterial	regulatory	proteins,	crp	family
LZ_Tnp_IS481	PF13011.6	gi|345007182|ref|YP_004810034.1|	-	0.028	15.0	0.0	0.068	13.7	0.0	1.7	1	0	0	1	1	1	0	leucine-zipper	of	insertion	element	IS481
HTH_41	PF14502.6	gi|345007182|ref|YP_004810034.1|	-	0.035	13.8	0.0	0.15	11.8	0.0	2.0	2	0	0	2	2	2	0	Helix-turn-helix	domain
HTH_11	PF08279.12	gi|345007182|ref|YP_004810034.1|	-	0.051	13.5	0.1	4	7.5	0.0	2.6	2	0	0	2	2	2	0	HTH	domain
RPA_C	PF08784.11	gi|345007182|ref|YP_004810034.1|	-	0.068	13.8	0.0	0.19	12.4	0.0	1.7	2	0	0	2	2	1	0	Replication	protein	A	C	terminal
Sigma70_r4	PF04545.16	gi|345007182|ref|YP_004810034.1|	-	0.11	12.1	0.1	2.2	7.9	0.0	2.4	2	0	0	2	2	2	0	Sigma-70,	region	4
HTH_Tnp_Tc3_1	PF11427.8	gi|345007182|ref|YP_004810034.1|	-	0.17	11.7	0.2	1.1e+02	2.8	0.0	3.3	3	0	0	3	3	3	0	Tc3	transposase
PadR	PF03551.14	gi|345007183|ref|YP_004810035.1|	-	1.5e-05	24.9	0.0	2.6e-05	24.1	0.0	1.4	1	0	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
DUF2513	PF10711.9	gi|345007183|ref|YP_004810035.1|	-	2.5e-05	24.5	0.0	4.5e-05	23.7	0.0	1.5	1	1	0	1	1	1	1	Hypothetical	protein	(DUF2513)
FUR	PF01475.19	gi|345007183|ref|YP_004810035.1|	-	2.8e-05	24.3	0.1	5.3e-05	23.4	0.0	1.5	2	0	0	2	2	2	1	Ferric	uptake	regulator	family
DUF86	PF01934.17	gi|345007183|ref|YP_004810035.1|	-	0.0022	17.9	0.1	0.0079	16.0	0.0	1.7	1	1	1	2	2	2	1	Protein	of	unknown	function	DUF86
HTH_11	PF08279.12	gi|345007183|ref|YP_004810035.1|	-	0.0022	17.9	0.0	0.0046	16.9	0.0	1.6	1	0	0	1	1	1	1	HTH	domain
HTH_20	PF12840.7	gi|345007183|ref|YP_004810035.1|	-	0.003	17.6	0.0	0.0059	16.6	0.0	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_24	PF13412.6	gi|345007183|ref|YP_004810035.1|	-	0.0077	15.8	0.2	0.031	13.9	0.0	2.1	3	0	0	3	3	3	1	Winged	helix-turn-helix	DNA-binding
RuBisCO_small	PF00101.20	gi|345007183|ref|YP_004810035.1|	-	0.015	15.3	0.0	0.061	13.3	0.1	1.9	1	1	0	1	1	1	0	Ribulose	bisphosphate	carboxylase,	small	chain
TrmB	PF01978.19	gi|345007183|ref|YP_004810035.1|	-	0.019	14.9	0.0	0.044	13.7	0.0	1.7	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
HTH_5	PF01022.20	gi|345007183|ref|YP_004810035.1|	-	0.043	13.7	0.0	0.079	12.8	0.0	1.4	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
MarR_2	PF12802.7	gi|345007183|ref|YP_004810035.1|	-	0.046	13.6	0.0	0.11	12.4	0.0	1.7	1	1	0	1	1	1	0	MarR	family
HxlR	PF01638.17	gi|345007183|ref|YP_004810035.1|	-	0.087	12.7	0.0	0.21	11.5	0.0	1.7	1	1	0	1	1	1	0	HxlR-like	helix-turn-helix
Stk19	PF10494.9	gi|345007183|ref|YP_004810035.1|	-	0.1	12.3	0.0	0.12	12.1	0.0	1.1	1	0	0	1	1	1	0	Serine-threonine	protein	kinase	19
HTH_27	PF13463.6	gi|345007183|ref|YP_004810035.1|	-	0.13	12.8	0.0	0.3	11.6	0.0	1.6	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
Mnd1	PF03962.15	gi|345007183|ref|YP_004810035.1|	-	0.16	12.3	0.1	0.28	11.5	0.1	1.4	1	0	0	1	1	1	0	Mnd1	HTH	domain
HTH_36	PF13730.6	gi|345007183|ref|YP_004810035.1|	-	0.17	11.9	0.0	0.29	11.1	0.0	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain
SWIM	PF04434.17	gi|345007185|ref|YP_004810037.1|	-	0.008	15.8	0.6	0.021	14.5	0.6	1.7	1	1	0	1	1	1	1	SWIM	zinc	finger
Peptidase_M78	PF06114.13	gi|345007186|ref|YP_004810038.1|	-	5.1e-05	23.2	0.0	8.4e-05	22.5	0.0	1.4	1	0	0	1	1	1	1	IrrE	N-terminal-like	domain
SprT-like	PF10263.9	gi|345007186|ref|YP_004810038.1|	-	0.013	15.4	0.1	0.063	13.1	0.0	2.0	2	0	0	2	2	2	0	SprT-like	family
Aminopep	PF10023.9	gi|345007186|ref|YP_004810038.1|	-	0.039	13.3	0.1	0.079	12.3	0.1	1.5	1	0	0	1	1	1	0	Putative	aminopeptidase
Zn_Tnp_IS1595	PF12760.7	gi|345007187|ref|YP_004810039.1|	-	7.7e-05	22.6	0.7	0.17	11.9	0.1	2.1	2	0	0	2	2	2	2	Transposase	zinc-ribbon	domain
DUF1272	PF06906.11	gi|345007187|ref|YP_004810039.1|	-	8.5e-05	22.6	1.3	9.1e-05	22.5	1.3	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1272)
DZR	PF12773.7	gi|345007187|ref|YP_004810039.1|	-	0.00013	21.9	0.8	0.00015	21.7	0.8	1.1	1	0	0	1	1	1	1	Double	zinc	ribbon
HypA	PF01155.19	gi|345007187|ref|YP_004810039.1|	-	0.00014	21.8	0.6	0.00014	21.8	0.6	1.1	1	0	0	1	1	1	1	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
zinc_ribbon_2	PF13240.6	gi|345007187|ref|YP_004810039.1|	-	0.00033	20.3	2.3	0.0004	20.0	2.3	1.2	1	0	0	1	1	1	1	zinc-ribbon	domain
zf-ribbon_3	PF13248.6	gi|345007187|ref|YP_004810039.1|	-	0.00046	19.5	1.3	0.00066	19.0	1.3	1.2	1	0	0	1	1	1	1	zinc-ribbon	domain
zinc_ribbon_15	PF17032.5	gi|345007187|ref|YP_004810039.1|	-	0.00055	20.6	0.4	0.00058	20.6	0.4	1.1	1	0	0	1	1	1	1	zinc-ribbon	family
Zn-ribbon_8	PF09723.10	gi|345007187|ref|YP_004810039.1|	-	0.001	19.1	5.1	0.0036	17.4	5.1	1.8	1	1	0	1	1	1	1	Zinc	ribbon	domain
UPF0547	PF10571.9	gi|345007187|ref|YP_004810039.1|	-	0.0028	17.7	3.5	0.0092	16.0	3.5	1.8	1	1	0	1	1	1	1	Uncharacterised	protein	family	UPF0547
zf-C3H2C3	PF17122.5	gi|345007187|ref|YP_004810039.1|	-	0.0057	16.7	1.6	0.0078	16.2	1.6	1.2	1	0	0	1	1	1	1	Zinc-finger
NRDD	PF13597.6	gi|345007187|ref|YP_004810039.1|	-	0.0091	14.8	0.7	0.0091	14.8	0.7	1.0	1	0	0	1	1	1	1	Anaerobic	ribonucleoside-triphosphate	reductase
TackOD1	PF18551.1	gi|345007187|ref|YP_004810039.1|	-	0.013	15.1	0.1	0.013	15.1	0.1	1.0	1	0	0	1	1	1	0	Thaumarchaeal	output	domain	1
zf-C3HC4_3	PF13920.6	gi|345007187|ref|YP_004810039.1|	-	0.018	14.9	0.3	0.021	14.7	0.3	1.1	1	0	0	1	1	1	0	Zinc	finger,	C3HC4	type	(RING	finger)
OrfB_Zn_ribbon	PF07282.11	gi|345007187|ref|YP_004810039.1|	-	0.021	14.8	2.5	0.14	12.1	0.6	2.0	1	1	1	2	2	2	0	Putative	transposase	DNA-binding	domain
TFIIS_C	PF01096.18	gi|345007187|ref|YP_004810039.1|	-	0.023	14.5	2.7	2.3	8.1	0.1	2.2	2	0	0	2	2	2	0	Transcription	factor	S-II	(TFIIS)
zf-IS66	PF13005.7	gi|345007187|ref|YP_004810039.1|	-	0.026	14.9	3.2	1.8	9.0	0.2	2.2	2	0	0	2	2	2	0	zinc-finger	binding	domain	of	transposase	IS66
Zn_ribbon_SprT	PF17283.2	gi|345007187|ref|YP_004810039.1|	-	0.03	14.2	1.8	0.38	10.7	0.1	2.0	1	1	1	2	2	2	0	SprT-like	zinc	ribbon	domain
zf-FPG_IleRS	PF06827.14	gi|345007187|ref|YP_004810039.1|	-	0.03	14.2	1.4	3.9	7.4	0.1	2.2	2	0	0	2	2	2	0	Zinc	finger	found	in	FPG	and	IleRS
zf-P11	PF03854.14	gi|345007187|ref|YP_004810039.1|	-	0.032	13.9	0.1	0.039	13.6	0.1	1.1	1	0	0	1	1	1	0	P-11	zinc	finger
RecR	PF02132.15	gi|345007187|ref|YP_004810039.1|	-	0.033	13.7	1.3	0.06	12.9	1.4	1.4	2	0	0	2	2	2	0	RecR	protein
Prim_Zn_Ribbon	PF08273.12	gi|345007187|ref|YP_004810039.1|	-	0.038	14.3	4.9	0.13	12.6	0.7	2.1	1	1	1	2	2	2	0	Zinc-binding	domain	of	primase-helicase
NOB1_Zn_bind	PF08772.11	gi|345007187|ref|YP_004810039.1|	-	0.042	14.0	1.1	0.051	13.7	1.1	1.2	1	0	0	1	1	1	0	Nin	one	binding	(NOB1)	Zn-ribbon	like
zf-BED	PF02892.15	gi|345007187|ref|YP_004810039.1|	-	0.056	13.5	1.0	0.075	13.1	1.0	1.3	1	0	0	1	1	1	0	BED	zinc	finger
DUF35_N	PF12172.8	gi|345007187|ref|YP_004810039.1|	-	0.093	12.6	4.0	0.19	11.6	4.0	1.5	1	1	0	1	1	1	0	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
Lar_restr_allev	PF14354.6	gi|345007187|ref|YP_004810039.1|	-	0.094	13.1	3.1	0.98	9.8	0.3	2.1	1	1	1	2	2	2	0	Restriction	alleviation	protein	Lar
zf-RRN7	PF11781.8	gi|345007187|ref|YP_004810039.1|	-	0.1	12.3	4.6	2.8	7.7	0.2	2.2	2	0	0	2	2	2	0	Zinc-finger	of	RNA-polymerase	I-specific	TFIIB,	Rrn7
RNA_POL_M_15KD	PF02150.16	gi|345007187|ref|YP_004810039.1|	-	0.14	12.1	2.8	0.62	10.0	0.1	2.1	1	1	1	2	2	2	0	RNA	polymerases	M/15	Kd	subunit
zinc_ribbon_9	PF14369.6	gi|345007187|ref|YP_004810039.1|	-	0.37	11.1	3.7	2.6	8.4	4.0	1.9	1	1	1	2	2	2	0	zinc-ribbon
zf-C2HC_2	PF13913.6	gi|345007187|ref|YP_004810039.1|	-	0.45	10.5	4.3	5.3	7.1	0.3	2.1	2	0	0	2	2	2	0	zinc-finger	of	a	C2HC-type
Rubredoxin_2	PF18073.1	gi|345007187|ref|YP_004810039.1|	-	0.49	10.2	5.2	3.9	7.3	5.2	2.0	1	1	0	1	1	1	0	Rubredoxin	metal	binding	domain
zf_UBZ	PF18439.1	gi|345007187|ref|YP_004810039.1|	-	1.5	8.4	4.2	8.1	6.1	0.2	2.1	1	1	1	2	2	2	0	Ubiquitin-Binding	Zinc	Finger
Rrf2	PF02082.20	gi|345007191|ref|YP_004810043.1|	-	0.0007	19.9	0.0	0.12	12.8	0.0	2.9	2	1	1	3	3	3	1	Transcriptional	regulator
HTH_IclR	PF09339.10	gi|345007191|ref|YP_004810043.1|	-	0.016	15.0	0.0	0.031	14.1	0.0	1.4	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
HTH_28	PF13518.6	gi|345007191|ref|YP_004810043.1|	-	0.026	14.6	0.4	0.054	13.6	0.0	1.7	2	0	0	2	2	2	0	Helix-turn-helix	domain
TrmB	PF01978.19	gi|345007191|ref|YP_004810043.1|	-	0.076	12.9	0.1	0.13	12.1	0.1	1.3	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
MarR_2	PF12802.7	gi|345007191|ref|YP_004810043.1|	-	0.095	12.6	0.0	0.18	11.7	0.0	1.4	1	0	0	1	1	1	0	MarR	family
Phage_NinH	PF06322.11	gi|345007191|ref|YP_004810043.1|	-	0.11	12.4	0.0	0.21	11.5	0.0	1.5	1	0	0	1	1	1	0	Phage	NinH	protein
Fe_dep_repress	PF01325.19	gi|345007191|ref|YP_004810043.1|	-	0.13	12.5	0.2	0.34	11.1	0.0	1.8	2	0	0	2	2	2	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_38	PF13936.6	gi|345007191|ref|YP_004810043.1|	-	0.16	11.7	0.1	0.27	11.0	0.1	1.3	1	0	0	1	1	1	0	Helix-turn-helix	domain
TSC22	PF01166.18	gi|345007192|ref|YP_004810044.1|	-	0.01	16.1	0.0	0.017	15.4	0.0	1.3	1	0	0	1	1	1	0	TSC-22/dip/bun	family
AraC_binding_2	PF14525.6	gi|345007193|ref|YP_004810045.1|	-	0.039	13.6	0.1	0.068	12.9	0.1	1.4	1	1	0	1	1	1	0	AraC-binding-like	domain
Mrr_cat	PF04471.12	gi|345007194|ref|YP_004810046.1|	-	5e-29	100.7	0.0	8.9e-29	99.9	0.0	1.4	1	0	0	1	1	1	1	Restriction	endonuclease
DZR	PF12773.7	gi|345007194|ref|YP_004810046.1|	-	0.0055	16.7	0.4	0.0055	16.7	0.4	1.8	2	0	0	2	2	2	1	Double	zinc	ribbon
Siva	PF05458.12	gi|345007194|ref|YP_004810046.1|	-	0.035	13.8	1.6	0.055	13.1	1.6	1.3	1	0	0	1	1	1	0	Cd27	binding	protein	(Siva)
zf-ribbon_3	PF13248.6	gi|345007194|ref|YP_004810046.1|	-	0.039	13.4	2.5	0.1	12.0	2.5	1.7	1	0	0	1	1	1	0	zinc-ribbon	domain
DUF3797	PF12677.7	gi|345007194|ref|YP_004810046.1|	-	0.05	13.5	0.3	0.16	11.9	0.3	1.8	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3797)
zinc_ribbon_15	PF17032.5	gi|345007194|ref|YP_004810046.1|	-	0.054	14.3	0.5	0.054	14.3	0.5	1.9	2	0	0	2	2	2	0	zinc-ribbon	family
DUF865	PF05906.11	gi|345007194|ref|YP_004810046.1|	-	0.13	12.1	0.1	0.38	10.6	0.1	1.8	1	0	0	1	1	1	0	Herpesvirus-7	repeat	of	unknown	function	(DUF865)
zinc_ribbon_2	PF13240.6	gi|345007194|ref|YP_004810046.1|	-	0.37	10.6	5.5	0.11	12.2	2.3	1.9	2	0	0	2	2	2	0	zinc-ribbon	domain
NOB1_Zn_bind	PF08772.11	gi|345007194|ref|YP_004810046.1|	-	0.45	10.7	2.6	1.2	9.4	2.6	1.6	1	0	0	1	1	1	0	Nin	one	binding	(NOB1)	Zn-ribbon	like
Metallophos	PF00149.28	gi|345007196|ref|YP_004810048.1|	-	6.8e-15	56.1	0.7	1.2e-14	55.3	0.7	1.4	1	0	0	1	1	1	1	Calcineurin-like	phosphoesterase
Metallophos_2	PF12850.7	gi|345007196|ref|YP_004810048.1|	-	3.7e-13	50.0	0.3	6.3e-13	49.3	0.3	1.3	1	0	0	1	1	1	1	Calcineurin-like	phosphoesterase	superfamily	domain
GFA	PF04828.14	gi|345007197|ref|YP_004810049.1|	-	0.015	15.6	0.8	0.39	11.1	0.1	2.2	1	1	1	2	2	2	0	Glutathione-dependent	formaldehyde-activating	enzyme
DZR	PF12773.7	gi|345007197|ref|YP_004810049.1|	-	0.021	14.9	0.5	0.034	14.2	0.5	1.3	1	0	0	1	1	1	0	Double	zinc	ribbon
zinc_ribbon_2	PF13240.6	gi|345007197|ref|YP_004810049.1|	-	0.026	14.2	2.1	3.2	7.6	0.1	2.3	2	0	0	2	2	2	0	zinc-ribbon	domain
Nudix_N_2	PF14803.6	gi|345007197|ref|YP_004810049.1|	-	0.044	13.7	1.8	6.2	6.8	0.1	2.7	3	0	0	3	3	3	0	Nudix	N-terminal
DUF2318	PF10080.9	gi|345007197|ref|YP_004810049.1|	-	0.085	13.0	0.1	0.11	12.6	0.1	1.3	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2318)
A2L_zn_ribbon	PF08792.10	gi|345007197|ref|YP_004810049.1|	-	0.097	12.4	0.8	1	9.2	0.1	2.2	2	0	0	2	2	2	0	A2L	zinc	ribbon	domain
DNA_ligase_ZBD	PF03119.16	gi|345007197|ref|YP_004810049.1|	-	0.2	11.7	3.2	1.5	8.9	0.3	2.5	2	0	0	2	2	2	0	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
RNA_POL_M_15KD	PF02150.16	gi|345007198|ref|YP_004810050.1|	-	0.01	15.7	0.1	0.01	15.7	0.1	2.1	2	0	0	2	2	2	1	RNA	polymerases	M/15	Kd	subunit
Zn_Tnp_IS1	PF03811.13	gi|345007198|ref|YP_004810050.1|	-	0.016	14.9	0.1	0.032	14.0	0.1	1.5	1	0	0	1	1	1	0	InsA	N-terminal	domain
Lar_restr_allev	PF14354.6	gi|345007198|ref|YP_004810050.1|	-	0.031	14.6	0.5	0.085	13.2	0.5	1.7	2	0	0	2	2	2	0	Restriction	alleviation	protein	Lar
OrfB_Zn_ribbon	PF07282.11	gi|345007198|ref|YP_004810050.1|	-	0.1	12.5	1.0	0.26	11.2	0.9	1.7	1	1	0	1	1	1	0	Putative	transposase	DNA-binding	domain
Elf1	PF05129.13	gi|345007198|ref|YP_004810050.1|	-	0.11	12.6	0.1	0.18	11.8	0.1	1.4	1	1	0	1	1	1	0	Transcription	elongation	factor	Elf1	like
Rubredoxin_2	PF18073.1	gi|345007198|ref|YP_004810050.1|	-	0.14	11.9	0.4	0.14	11.9	0.4	2.3	2	0	0	2	2	2	0	Rubredoxin	metal	binding	domain
Zn-ribbon_8	PF09723.10	gi|345007198|ref|YP_004810050.1|	-	0.28	11.3	2.5	14	5.9	0.2	2.3	2	0	0	2	2	2	0	Zinc	ribbon	domain
NIR_SIR_ferr	PF03460.17	gi|345007202|ref|YP_004810054.1|	-	0.061	13.2	0.0	2	8.3	0.0	2.2	2	0	0	2	2	2	0	Nitrite/Sulfite	reductase	ferredoxin-like	half	domain
DDE_Tnp_IS66	PF03050.14	gi|345007204|ref|YP_004810056.1|	-	4.4e-49	167.5	0.2	4.4e-49	167.5	0.2	1.9	2	0	0	2	2	2	1	Transposase	IS66	family
SlyX	PF04102.12	gi|345007204|ref|YP_004810056.1|	-	0.00015	22.3	5.5	0.00052	20.6	5.5	1.9	1	0	0	1	1	1	1	SlyX
MscS_porin	PF12795.7	gi|345007204|ref|YP_004810056.1|	-	0.0008	19.0	5.1	0.0008	19.0	5.1	1.8	2	0	0	2	2	2	1	Mechanosensitive	ion	channel	porin	domain
UPF0242	PF06785.11	gi|345007204|ref|YP_004810056.1|	-	0.0026	17.9	11.2	0.0048	17.0	11.2	1.4	1	0	0	1	1	1	1	Uncharacterised	protein	family	(UPF0242)	N-terminus
DUF16	PF01519.16	gi|345007204|ref|YP_004810056.1|	-	0.0029	18.1	5.6	0.0061	17.0	5.6	1.4	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF16
zf-IS66	PF13005.7	gi|345007204|ref|YP_004810056.1|	-	0.0036	17.7	3.7	0.0036	17.7	3.7	2.6	3	0	0	3	3	1	1	zinc-finger	binding	domain	of	transposase	IS66
HemX	PF04375.14	gi|345007204|ref|YP_004810056.1|	-	0.0046	16.3	2.5	0.0074	15.6	2.5	1.2	1	0	0	1	1	1	1	HemX,	putative	uroporphyrinogen-III	C-methyltransferase
Atg14	PF10186.9	gi|345007204|ref|YP_004810056.1|	-	0.006	15.7	4.1	0.01	15.0	4.1	1.3	1	0	0	1	1	1	1	Vacuolar	sorting	38	and	autophagy-related	subunit	14
SKA1	PF07160.12	gi|345007204|ref|YP_004810056.1|	-	0.0097	15.8	0.7	0.017	15.0	0.7	1.3	1	0	0	1	1	1	1	Spindle	and	kinetochore-associated	protein	1
YkyA	PF10368.9	gi|345007204|ref|YP_004810056.1|	-	0.021	14.5	6.4	0.037	13.7	6.4	1.2	1	0	0	1	1	1	0	Putative	cell-wall	binding	lipoprotein
ATG16	PF08614.11	gi|345007204|ref|YP_004810056.1|	-	0.027	14.7	7.0	0.027	14.7	7.0	2.1	3	0	0	3	3	1	0	Autophagy	protein	16	(ATG16)
HOOK	PF05622.12	gi|345007204|ref|YP_004810056.1|	-	0.03	12.5	6.0	0.044	11.9	6.0	1.1	1	0	0	1	1	1	0	HOOK	protein
DDE_Tnp_IS240	PF13610.6	gi|345007204|ref|YP_004810056.1|	-	0.037	14.3	3.3	0.43	10.8	0.0	2.6	2	1	0	2	2	2	0	DDE	domain
AAA_23	PF13476.6	gi|345007204|ref|YP_004810056.1|	-	0.037	14.5	4.7	0.08	13.4	4.7	1.5	1	0	0	1	1	1	0	AAA	domain
Noelin-1	PF12308.8	gi|345007204|ref|YP_004810056.1|	-	0.042	13.8	2.0	0.085	12.9	0.9	1.9	2	0	0	2	2	2	0	Neurogenesis	glycoprotein
Phage_Mu_Gam	PF07352.12	gi|345007204|ref|YP_004810056.1|	-	0.048	13.6	4.8	0.087	12.7	4.8	1.4	1	0	0	1	1	1	0	Bacteriophage	Mu	Gam	like	protein
DUF3584	PF12128.8	gi|345007204|ref|YP_004810056.1|	-	0.059	10.9	6.5	0.088	10.3	6.5	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3584)
XhlA	PF10779.9	gi|345007204|ref|YP_004810056.1|	-	0.062	13.5	8.4	0.15	12.3	8.4	1.7	1	0	0	1	1	1	0	Haemolysin	XhlA
TMPIT	PF07851.13	gi|345007204|ref|YP_004810056.1|	-	0.077	12.2	3.2	0.12	11.6	3.2	1.2	1	0	0	1	1	1	0	TMPIT-like	protein
Phage_HK97_TLTM	PF06120.11	gi|345007204|ref|YP_004810056.1|	-	0.094	11.9	1.1	0.15	11.3	1.1	1.2	1	0	0	1	1	1	0	Tail	length	tape	measure	protein
Exonuc_VII_L	PF02601.15	gi|345007204|ref|YP_004810056.1|	-	0.1	12.1	1.3	0.24	10.9	1.3	1.5	1	0	0	1	1	1	0	Exonuclease	VII,	large	subunit
Fmp27_WPPW	PF10359.9	gi|345007204|ref|YP_004810056.1|	-	0.11	11.3	2.2	0.17	10.7	2.2	1.2	1	0	0	1	1	1	0	RNA	pol	II	promoter	Fmp27	protein	domain
DUF1664	PF07889.12	gi|345007204|ref|YP_004810056.1|	-	0.11	12.5	2.0	0.21	11.7	2.0	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1664)
FPP	PF05911.11	gi|345007204|ref|YP_004810056.1|	-	0.11	10.6	5.4	0.15	10.2	5.4	1.1	1	0	0	1	1	1	0	Filament-like	plant	protein,	long	coiled-coil
HSBP1	PF06825.12	gi|345007204|ref|YP_004810056.1|	-	0.18	11.7	5.5	0.45	10.4	1.1	2.4	1	1	0	2	2	2	0	Heat	shock	factor	binding	protein	1
DUF4446	PF14584.6	gi|345007204|ref|YP_004810056.1|	-	0.19	11.7	2.9	0.34	10.9	2.9	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF4446)
BST2	PF16716.5	gi|345007204|ref|YP_004810056.1|	-	0.26	11.9	6.2	0.68	10.5	6.2	1.7	1	0	0	1	1	1	0	Bone	marrow	stromal	antigen	2
FlaC_arch	PF05377.11	gi|345007204|ref|YP_004810056.1|	-	0.31	11.5	7.4	0.72	10.3	7.4	1.6	1	0	0	1	1	1	0	Flagella	accessory	protein	C	(FlaC)
FliS	PF02561.14	gi|345007204|ref|YP_004810056.1|	-	0.37	11.1	3.1	3.2	8.0	0.6	2.4	2	0	0	2	2	2	0	Flagellar	protein	FliS
AAA_13	PF13166.6	gi|345007204|ref|YP_004810056.1|	-	0.84	8.2	4.7	1.2	7.6	4.7	1.1	1	0	0	1	1	1	0	AAA	domain
ATP-synt_E	PF05680.12	gi|345007204|ref|YP_004810056.1|	-	0.87	10.0	4.7	2.7	8.4	4.7	1.9	1	0	0	1	1	1	0	ATP	synthase	E	chain
Fzo_mitofusin	PF04799.13	gi|345007204|ref|YP_004810056.1|	-	0.88	9.1	3.3	1.6	8.2	3.3	1.3	1	0	0	1	1	1	0	fzo-like	conserved	region
Synaptobrevin	PF00957.21	gi|345007204|ref|YP_004810056.1|	-	1.9	8.3	3.4	3.9	7.3	3.4	1.4	1	0	0	1	1	1	0	Synaptobrevin
PKcGMP_CC	PF16808.5	gi|345007204|ref|YP_004810056.1|	-	2	8.3	20.5	2.9	7.8	13.4	2.9	1	1	1	2	2	2	0	Coiled-coil	N-terminus	of	cGMP-dependent	protein	kinase
UPF0449	PF15136.6	gi|345007204|ref|YP_004810056.1|	-	2.9	8.4	10.9	14	6.3	5.1	2.8	2	0	0	2	2	2	0	Uncharacterised	protein	family	UPF0449
Spc7	PF08317.11	gi|345007204|ref|YP_004810056.1|	-	3.7	6.3	14.0	0.086	11.7	6.7	1.8	2	0	0	2	2	2	0	Spc7	kinetochore	protein
TMF_DNA_bd	PF12329.8	gi|345007204|ref|YP_004810056.1|	-	5.3	7.1	15.6	0.74	9.8	11.5	1.7	2	0	0	2	2	1	0	TATA	element	modulatory	factor	1	DNA	binding
FemAB	PF02388.16	gi|345007204|ref|YP_004810056.1|	-	5.4	5.8	6.3	8.1	5.2	6.3	1.1	1	0	0	1	1	1	0	FemAB	family
DUF3552	PF12072.8	gi|345007204|ref|YP_004810056.1|	-	5.5	6.4	21.2	0.04	13.3	11.5	2.0	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF3552)
DUF5446	PF17522.2	gi|345007204|ref|YP_004810056.1|	-	6.6	7.0	12.0	23	5.3	12.0	1.9	1	0	0	1	1	1	0	Family	of	unknown	function	(DUF5446)
Med9	PF07544.13	gi|345007204|ref|YP_004810056.1|	-	6.6	6.9	12.5	45	4.2	12.5	2.3	1	1	0	1	1	1	0	RNA	polymerase	II	transcription	mediator	complex	subunit	9
Spt4	PF06093.13	gi|345007205|ref|YP_004810057.1|	-	0.0011	19.0	0.8	0.0046	17.0	0.1	2.2	2	0	0	2	2	2	1	Spt4/RpoE2	zinc	finger
HypA	PF01155.19	gi|345007205|ref|YP_004810057.1|	-	0.0019	18.2	3.9	0.084	12.9	0.4	2.2	2	0	0	2	2	2	2	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
RNA_POL_M_15KD	PF02150.16	gi|345007205|ref|YP_004810057.1|	-	0.024	14.5	7.9	0.59	10.0	0.2	4.0	4	0	0	4	4	4	0	RNA	polymerases	M/15	Kd	subunit
zf-ribbon_3	PF13248.6	gi|345007205|ref|YP_004810057.1|	-	0.024	14.0	3.1	0.024	14.0	3.1	2.6	3	0	0	3	3	3	0	zinc-ribbon	domain
zinc_ribbon_2	PF13240.6	gi|345007205|ref|YP_004810057.1|	-	0.025	14.3	2.6	0.025	14.3	2.6	3.1	3	0	0	3	3	3	0	zinc-ribbon	domain
zf-BED	PF02892.15	gi|345007205|ref|YP_004810057.1|	-	0.11	12.6	2.4	0.69	10.0	0.2	2.8	3	0	0	3	3	3	0	BED	zinc	finger
zinc_ribbon_15	PF17032.5	gi|345007205|ref|YP_004810057.1|	-	0.2	12.4	10.6	0.69	10.7	2.0	2.8	2	1	1	3	3	3	0	zinc-ribbon	family
Zf_RING	PF16744.5	gi|345007205|ref|YP_004810057.1|	-	0.4	10.8	3.2	25	5.1	0.1	3.4	3	0	0	3	3	3	0	KIAA1045	RING	finger
DZR	PF12773.7	gi|345007205|ref|YP_004810057.1|	-	0.44	10.6	10.3	0.76	9.9	2.5	2.7	2	1	0	2	2	2	0	Double	zinc	ribbon
HalOD1	PF18545.1	gi|345007206|ref|YP_004810058.1|	-	1.6e-22	79.5	0.2	4e-22	78.3	0.1	1.7	2	0	0	2	2	2	1	Halobacterial	output	domain	1
DUF835	PF05763.12	gi|345007206|ref|YP_004810058.1|	-	0.0022	17.7	0.0	0.0037	17.0	0.0	1.5	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF835)
PadR	PF03551.14	gi|345007207|ref|YP_004810059.1|	-	1.9e-09	37.3	1.3	6.3e-09	35.7	1.3	1.7	1	1	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
HTH_5	PF01022.20	gi|345007207|ref|YP_004810059.1|	-	1.8e-07	30.9	0.0	2.2e-07	30.6	0.0	1.1	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_20	PF12840.7	gi|345007207|ref|YP_004810059.1|	-	4.6e-06	26.6	0.1	6.9e-06	26.0	0.1	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_34	PF13601.6	gi|345007207|ref|YP_004810059.1|	-	2.2e-05	24.5	0.0	2.6e-05	24.3	0.0	1.2	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
TrmB	PF01978.19	gi|345007207|ref|YP_004810059.1|	-	2.7e-05	23.9	0.0	3.5e-05	23.6	0.0	1.1	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
MarR_2	PF12802.7	gi|345007207|ref|YP_004810059.1|	-	3e-05	23.8	0.0	4e-05	23.4	0.0	1.2	1	0	0	1	1	1	1	MarR	family
HTH_24	PF13412.6	gi|345007207|ref|YP_004810059.1|	-	4.9e-05	22.8	0.1	0.0052	16.3	0.0	2.2	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
HTH_45	PF14947.6	gi|345007207|ref|YP_004810059.1|	-	0.00017	21.5	0.0	0.0002	21.3	0.0	1.1	1	0	0	1	1	1	1	Winged	helix-turn-helix
HTH_11	PF08279.12	gi|345007207|ref|YP_004810059.1|	-	0.00021	21.2	0.0	0.00028	20.8	0.0	1.3	1	1	0	1	1	1	1	HTH	domain
DUF1495	PF07381.11	gi|345007207|ref|YP_004810059.1|	-	0.0017	18.1	0.1	0.002	17.9	0.1	1.4	1	1	0	1	1	1	1	Winged	helix	DNA-binding	domain	(DUF1495)
DUF4364	PF14277.6	gi|345007207|ref|YP_004810059.1|	-	0.002	17.9	0.0	0.0023	17.7	0.0	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4364)
HxlR	PF01638.17	gi|345007207|ref|YP_004810059.1|	-	0.013	15.3	0.0	0.015	15.1	0.0	1.1	1	0	0	1	1	1	0	HxlR-like	helix-turn-helix
DUF505	PF04458.12	gi|345007207|ref|YP_004810059.1|	-	0.03	12.7	0.1	0.03	12.7	0.1	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF505)
FUR	PF01475.19	gi|345007207|ref|YP_004810059.1|	-	0.033	14.3	0.0	0.037	14.2	0.0	1.2	1	1	0	1	1	1	0	Ferric	uptake	regulator	family
Replic_Relax	PF13814.6	gi|345007207|ref|YP_004810059.1|	-	0.04	14.0	0.1	0.04	14.0	0.1	1.1	1	0	0	1	1	1	0	Replication-relaxation
Rrf2	PF02082.20	gi|345007207|ref|YP_004810059.1|	-	0.065	13.6	0.0	0.075	13.4	0.0	1.3	1	0	0	1	1	1	0	Transcriptional	regulator
MarR	PF01047.22	gi|345007207|ref|YP_004810059.1|	-	0.071	13.1	0.0	0.1	12.5	0.0	1.3	1	0	0	1	1	1	0	MarR	family
HTH_40	PF14493.6	gi|345007207|ref|YP_004810059.1|	-	0.094	13.2	0.0	0.1	13.0	0.0	1.2	1	0	0	1	1	1	0	Helix-turn-helix	domain
TFIIB	PF00382.19	gi|345007208|ref|YP_004810060.1|	-	1.3e-27	95.6	0.7	1.8e-12	47.1	0.1	2.4	2	0	0	2	2	2	2	Transcription	factor	TFIIB	repeat
TF_Zn_Ribbon	PF08271.12	gi|345007208|ref|YP_004810060.1|	-	7.1e-12	44.6	4.3	1.4e-11	43.7	4.3	1.5	1	0	0	1	1	1	1	TFIIB	zinc-binding
RB_B	PF01857.20	gi|345007208|ref|YP_004810060.1|	-	0.0029	17.6	0.0	0.0056	16.7	0.0	1.4	1	0	0	1	1	1	1	Retinoblastoma-associated	protein	B	domain
DZR	PF12773.7	gi|345007208|ref|YP_004810060.1|	-	0.027	14.5	1.4	0.057	13.5	1.4	1.4	1	0	0	1	1	1	0	Double	zinc	ribbon
OrfB_Zn_ribbon	PF07282.11	gi|345007208|ref|YP_004810060.1|	-	0.055	13.4	1.8	0.13	12.2	1.8	1.6	1	0	0	1	1	1	0	Putative	transposase	DNA-binding	domain
zinc-ribbons_6	PF07191.12	gi|345007208|ref|YP_004810060.1|	-	0.15	12.1	1.5	0.34	10.9	1.5	1.5	1	0	0	1	1	1	0	zinc-ribbons
PHF5	PF03660.14	gi|345007208|ref|YP_004810060.1|	-	0.19	11.9	1.8	0.43	10.8	1.8	1.5	1	0	0	1	1	1	0	PHF5-like	protein
UPF0547	PF10571.9	gi|345007208|ref|YP_004810060.1|	-	0.2	11.8	1.7	0.43	10.7	1.7	1.6	1	0	0	1	1	1	0	Uncharacterised	protein	family	UPF0547
DDE_Tnp_IS66	PF03050.14	gi|345007210|ref|YP_004810062.1|	-	7e-49	166.8	0.2	7e-49	166.8	0.2	2.0	2	1	0	2	2	2	1	Transposase	IS66	family
ZapB	PF06005.12	gi|345007210|ref|YP_004810062.1|	-	3e-09	37.2	6.3	9.7e-09	35.6	6.3	1.9	1	0	0	1	1	1	1	Cell	division	protein	ZapB
zf-IS66	PF13005.7	gi|345007210|ref|YP_004810062.1|	-	1.9e-05	25.0	4.3	4.5e-05	23.8	4.3	1.7	1	0	0	1	1	1	1	zinc-finger	binding	domain	of	transposase	IS66
YabA	PF06156.13	gi|345007210|ref|YP_004810062.1|	-	4.3e-05	24.1	4.2	0.00014	22.4	4.2	1.8	1	0	0	1	1	1	1	Initiation	control	protein	YabA
CASP_C	PF08172.12	gi|345007210|ref|YP_004810062.1|	-	0.00024	20.6	1.9	0.00039	19.9	1.9	1.2	1	0	0	1	1	1	1	CASP	C	terminal
JIP_LZII	PF16471.5	gi|345007210|ref|YP_004810062.1|	-	0.00056	20.0	3.4	0.0012	19.0	3.4	1.6	1	0	0	1	1	1	1	JNK-interacting	protein	leucine	zipper	II
bZIP_1	PF00170.21	gi|345007210|ref|YP_004810062.1|	-	0.0018	18.3	7.8	0.004	17.2	7.8	1.6	1	0	0	1	1	1	1	bZIP	transcription	factor
DDE_Tnp_IS240	PF13610.6	gi|345007210|ref|YP_004810062.1|	-	0.003	17.8	0.8	0.013	15.7	0.0	2.3	2	1	0	2	2	2	1	DDE	domain
SlyX	PF04102.12	gi|345007210|ref|YP_004810062.1|	-	0.0054	17.3	5.4	0.014	16.0	5.4	1.7	1	0	0	1	1	1	1	SlyX
NUDE_C	PF04880.13	gi|345007210|ref|YP_004810062.1|	-	0.013	16.0	4.4	0.034	14.6	4.4	1.6	1	0	0	1	1	1	0	NUDE	protein,	C-terminal	conserved	region
CCDC106	PF15794.5	gi|345007210|ref|YP_004810062.1|	-	0.02	14.6	3.6	0.042	13.6	3.6	1.4	1	0	0	1	1	1	0	Coiled-coil	domain-containing	protein	106
Cnn_1N	PF07989.11	gi|345007210|ref|YP_004810062.1|	-	0.026	14.7	6.4	0.056	13.6	6.4	1.5	1	0	0	1	1	1	0	Centrosomin	N-terminal	motif	1
SKA1	PF07160.12	gi|345007210|ref|YP_004810062.1|	-	0.029	14.2	0.9	0.057	13.3	0.9	1.4	1	0	0	1	1	1	0	Spindle	and	kinetochore-associated	protein	1
CENP-H	PF05837.12	gi|345007210|ref|YP_004810062.1|	-	0.03	14.7	3.3	0.072	13.5	3.3	1.6	1	0	0	1	1	1	0	Centromere	protein	H	(CENP-H)
DUF4201	PF13870.6	gi|345007210|ref|YP_004810062.1|	-	0.039	13.7	3.6	0.078	12.7	3.6	1.5	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4201)
RP-C_C	PF11800.8	gi|345007210|ref|YP_004810062.1|	-	0.04	14.0	1.2	0.082	13.0	1.2	1.5	1	0	0	1	1	1	0	Replication	protein	C	C-terminal	region
V_ATPase_I	PF01496.19	gi|345007210|ref|YP_004810062.1|	-	0.049	11.6	2.1	0.07	11.1	2.1	1.1	1	0	0	1	1	1	0	V-type	ATPase	116kDa	subunit	family
HSBP1	PF06825.12	gi|345007210|ref|YP_004810062.1|	-	0.06	13.2	0.3	0.11	12.3	0.3	1.4	1	0	0	1	1	1	0	Heat	shock	factor	binding	protein	1
XhlA	PF10779.9	gi|345007210|ref|YP_004810062.1|	-	0.067	13.4	5.8	0.18	12.0	5.8	1.7	1	0	0	1	1	1	0	Haemolysin	XhlA
FlaC_arch	PF05377.11	gi|345007210|ref|YP_004810062.1|	-	0.072	13.5	3.1	0.17	12.3	3.1	1.6	1	0	0	1	1	1	0	Flagella	accessory	protein	C	(FlaC)
TSC22	PF01166.18	gi|345007210|ref|YP_004810062.1|	-	0.087	13.1	14.9	0.11	12.8	7.5	3.3	2	1	1	3	3	3	0	TSC-22/dip/bun	family
HOOK	PF05622.12	gi|345007210|ref|YP_004810062.1|	-	0.093	10.9	3.9	0.13	10.3	3.9	1.1	1	0	0	1	1	1	0	HOOK	protein
GAS	PF13851.6	gi|345007210|ref|YP_004810062.1|	-	0.12	11.8	6.2	0.21	10.9	6.2	1.3	1	0	0	1	1	1	0	Growth-arrest	specific	micro-tubule	binding
DUF4988	PF16378.5	gi|345007210|ref|YP_004810062.1|	-	0.14	11.8	3.3	0.89	9.2	1.5	2.2	2	0	0	2	2	2	0	Domain	of	unknown	function
HALZ	PF02183.18	gi|345007210|ref|YP_004810062.1|	-	0.2	11.9	7.1	0.26	11.6	6.1	1.8	2	0	0	2	2	1	0	Homeobox	associated	leucine	zipper
EMP24_GP25L	PF01105.24	gi|345007210|ref|YP_004810062.1|	-	0.24	11.3	5.2	4.1	7.3	4.2	2.2	2	0	0	2	2	2	0	emp24/gp25L/p24	family/GOLD
Synaptobrevin	PF00957.21	gi|345007210|ref|YP_004810062.1|	-	0.25	11.1	1.7	0.43	10.4	1.7	1.3	1	0	0	1	1	1	0	Synaptobrevin
Spc24	PF08286.11	gi|345007210|ref|YP_004810062.1|	-	0.27	11.5	3.5	0.57	10.5	3.5	1.5	1	0	0	1	1	1	0	Spc24	subunit	of	Ndc80
DivIC	PF04977.15	gi|345007210|ref|YP_004810062.1|	-	0.31	10.8	8.4	0.77	9.6	8.0	1.9	1	1	0	1	1	1	0	Septum	formation	initiator
SpoVR	PF04293.13	gi|345007210|ref|YP_004810062.1|	-	0.35	9.5	4.7	0.55	8.9	4.7	1.2	1	0	0	1	1	1	0	SpoVR	like	protein
Shugoshin_N	PF07558.11	gi|345007210|ref|YP_004810062.1|	-	0.62	10.0	6.8	0.15	11.9	2.5	2.0	1	1	1	2	2	2	0	Shugoshin	N-terminal	coiled-coil	region
Jnk-SapK_ap_N	PF09744.9	gi|345007210|ref|YP_004810062.1|	-	0.68	10.1	7.3	1.9	8.7	7.3	1.7	1	0	0	1	1	1	0	JNK_SAPK-associated	protein-1
Chibby	PF14645.6	gi|345007210|ref|YP_004810062.1|	-	0.7	10.3	4.1	1.7	9.1	4.1	1.6	1	0	0	1	1	1	0	Chibby	family
APG6_N	PF17675.1	gi|345007210|ref|YP_004810062.1|	-	0.77	10.3	9.2	1.5	9.3	9.2	1.5	1	0	0	1	1	1	0	Apg6	coiled-coil	region
ADIP	PF11559.8	gi|345007210|ref|YP_004810062.1|	-	0.78	9.8	7.1	1.7	8.7	7.1	1.5	1	0	0	1	1	1	0	Afadin-	and	alpha	-actinin-Binding
Prefoldin_2	PF01920.20	gi|345007210|ref|YP_004810062.1|	-	0.92	9.5	8.3	1.8	8.6	8.3	1.4	1	0	0	1	1	1	0	Prefoldin	subunit
bZIP_2	PF07716.15	gi|345007210|ref|YP_004810062.1|	-	1.2	9.3	14.7	8.7	6.5	6.5	2.6	1	1	1	2	2	2	0	Basic	region	leucine	zipper
GIT_CC	PF16559.5	gi|345007210|ref|YP_004810062.1|	-	1.2	9.0	5.9	2.4	8.1	5.9	1.5	1	0	0	1	1	1	0	GIT	coiled-coil	Rho	guanine	nucleotide	exchange	factor
GrpE	PF01025.19	gi|345007210|ref|YP_004810062.1|	-	1.2	8.8	5.5	2.3	7.9	5.5	1.4	1	0	0	1	1	1	0	GrpE
DUF2205	PF10224.9	gi|345007210|ref|YP_004810062.1|	-	1.5	8.9	5.6	3.6	7.7	5.6	1.6	1	0	0	1	1	1	0	Short	coiled-coil	protein
Astro_capsid_p	PF12226.8	gi|345007210|ref|YP_004810062.1|	-	1.5	7.9	4.8	2.3	7.3	4.8	1.2	1	0	0	1	1	1	0	Turkey	astrovirus	capsid	protein
DUF3552	PF12072.8	gi|345007210|ref|YP_004810062.1|	-	2.1	7.7	7.5	3.7	6.9	7.5	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3552)
DUF3450	PF11932.8	gi|345007210|ref|YP_004810062.1|	-	2.3	7.4	8.2	0.46	9.8	3.0	2.3	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF3450)
NRBF2	PF08961.10	gi|345007210|ref|YP_004810062.1|	-	2.4	7.7	14.9	0.031	13.9	7.5	1.6	2	0	0	2	2	1	0	Nuclear	receptor-binding	factor	2,	autophagy	regulator
UPF0242	PF06785.11	gi|345007210|ref|YP_004810062.1|	-	7.3	6.6	7.8	2.4	8.2	5.0	1.6	2	0	0	2	2	1	0	Uncharacterised	protein	family	(UPF0242)	N-terminus
Glycos_transf_1	PF00534.20	gi|345007211|ref|YP_004810063.1|	-	2.1e-25	89.2	0.0	4.5e-25	88.2	0.0	1.5	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.6	gi|345007211|ref|YP_004810063.1|	-	1.4e-18	67.6	0.0	2.8e-18	66.6	0.0	1.5	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_2	PF13524.6	gi|345007211|ref|YP_004810063.1|	-	4.4e-12	46.2	0.0	1.1e-11	45.0	0.0	1.7	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_transf_4	PF13439.6	gi|345007211|ref|YP_004810063.1|	-	2.6e-07	30.8	0.0	9.1e-07	29.0	0.0	1.9	2	0	0	2	2	2	1	Glycosyltransferase	Family	4
Glyco_trans_4_4	PF13579.6	gi|345007211|ref|YP_004810063.1|	-	7.9e-06	26.4	0.0	1.3e-05	25.7	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	transferase	4-like	domain
Staygreen	PF12638.7	gi|345007211|ref|YP_004810063.1|	-	0.11	12.3	0.1	0.81	9.5	0.0	2.2	2	0	0	2	2	2	0	Staygreen	protein
EntA_Immun	PF08951.10	gi|345007211|ref|YP_004810063.1|	-	0.33	11.3	8.2	0.2	12.0	0.5	3.6	4	0	0	4	4	4	0	Enterocin	A	Immunity
Polbeta	PF18765.1	gi|345007211|ref|YP_004810063.1|	-	1.4	9.1	4.2	4.3	7.5	0.1	2.8	3	0	0	3	3	3	0	Polymerase	beta,	Nucleotidyltransferase
Methyltransf_21	PF05050.12	gi|345007212|ref|YP_004810064.1|	-	2.6e-06	27.6	0.2	3.6e-06	27.1	0.2	1.2	1	0	0	1	1	1	1	Methyltransferase	FkbM	domain
Met_10	PF02475.16	gi|345007212|ref|YP_004810064.1|	-	0.01	15.6	0.0	0.014	15.1	0.0	1.4	1	0	0	1	1	1	0	Met-10+	like-protein
V_cholerae_RfbT	PF05575.11	gi|345007212|ref|YP_004810064.1|	-	0.016	14.5	0.7	0.024	13.9	0.7	1.3	1	1	0	1	1	1	0	Vibrio	cholerae	RfbT	protein
MTS	PF05175.14	gi|345007212|ref|YP_004810064.1|	-	0.026	14.1	0.0	0.045	13.3	0.0	1.3	1	0	0	1	1	1	0	Methyltransferase	small	domain
DDE_Tnp_1	PF01609.21	gi|345007213|ref|YP_004810065.1|	-	0.031	13.9	0.1	0.085	12.5	0.1	1.7	1	1	0	1	1	1	0	Transposase	DDE	domain
DUF2513	PF10711.9	gi|345007214|ref|YP_004810066.1|	-	3.1e-05	24.2	0.0	5.4e-05	23.4	0.0	1.4	1	1	0	1	1	1	1	Hypothetical	protein	(DUF2513)
PadR	PF03551.14	gi|345007214|ref|YP_004810066.1|	-	6.4e-05	22.8	0.0	0.00011	22.0	0.0	1.4	1	0	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
FUR	PF01475.19	gi|345007214|ref|YP_004810066.1|	-	0.00014	22.0	0.1	0.0003	20.9	0.0	1.6	2	0	0	2	2	2	1	Ferric	uptake	regulator	family
HTH_11	PF08279.12	gi|345007214|ref|YP_004810066.1|	-	0.00049	20.0	0.0	0.00098	19.0	0.0	1.6	2	0	0	2	2	2	1	HTH	domain
HTH_20	PF12840.7	gi|345007214|ref|YP_004810066.1|	-	0.0019	18.2	0.0	0.0035	17.4	0.0	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
RuBisCO_small	PF00101.20	gi|345007214|ref|YP_004810066.1|	-	0.0095	15.9	0.0	0.098	12.7	0.0	2.0	1	1	1	2	2	2	1	Ribulose	bisphosphate	carboxylase,	small	chain
DUF86	PF01934.17	gi|345007214|ref|YP_004810066.1|	-	0.01	15.7	0.0	0.033	14.0	0.0	1.7	2	0	0	2	2	2	0	Protein	of	unknown	function	DUF86
HTH_24	PF13412.6	gi|345007214|ref|YP_004810066.1|	-	0.014	14.9	0.1	0.039	13.5	0.0	1.8	2	0	0	2	2	2	0	Winged	helix-turn-helix	DNA-binding
MarR_2	PF12802.7	gi|345007214|ref|YP_004810066.1|	-	0.016	15.1	0.0	0.031	14.2	0.0	1.6	1	1	0	1	1	1	0	MarR	family
TrmB	PF01978.19	gi|345007214|ref|YP_004810066.1|	-	0.016	15.0	0.0	0.034	14.0	0.0	1.7	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
HTH_5	PF01022.20	gi|345007214|ref|YP_004810066.1|	-	0.046	13.6	0.0	0.095	12.6	0.0	1.5	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
Stk19	PF10494.9	gi|345007214|ref|YP_004810066.1|	-	0.12	12.1	0.0	0.14	11.8	0.0	1.1	1	0	0	1	1	1	0	Serine-threonine	protein	kinase	19
MarR	PF01047.22	gi|345007214|ref|YP_004810066.1|	-	0.12	12.3	0.0	0.32	10.9	0.0	1.8	1	1	0	1	1	1	0	MarR	family
HTH_36	PF13730.6	gi|345007214|ref|YP_004810066.1|	-	0.17	11.8	0.0	0.29	11.1	0.0	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain
SWIM	PF04434.17	gi|345007216|ref|YP_004810068.1|	-	0.033	13.9	0.9	0.1	12.3	0.9	1.8	1	1	0	1	1	1	0	SWIM	zinc	finger
Peptidase_M78	PF06114.13	gi|345007217|ref|YP_004810069.1|	-	0.00077	19.4	0.0	0.0012	18.8	0.0	1.4	1	0	0	1	1	1	1	IrrE	N-terminal-like	domain
OGG_N	PF07934.12	gi|345007217|ref|YP_004810069.1|	-	0.076	13.1	0.1	0.2	11.7	0.0	1.8	2	1	0	2	2	2	0	8-oxoguanine	DNA	glycosylase,	N-terminal	domain
SprT-like	PF10263.9	gi|345007217|ref|YP_004810069.1|	-	0.086	12.7	0.2	0.32	10.9	0.1	1.9	2	0	0	2	2	2	0	SprT-like	family
DUF2268	PF10026.9	gi|345007217|ref|YP_004810069.1|	-	0.087	12.4	0.0	0.18	11.3	0.0	1.4	1	0	0	1	1	1	0	Predicted	Zn-dependent	protease	(DUF2268)
HypA	PF01155.19	gi|345007218|ref|YP_004810070.1|	-	0.00029	20.8	1.6	0.00034	20.6	1.6	1.2	1	0	0	1	1	1	1	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
zinc_ribbon_15	PF17032.5	gi|345007218|ref|YP_004810070.1|	-	0.0003	21.5	0.4	0.00036	21.2	0.4	1.2	1	0	0	1	1	1	1	zinc-ribbon	family
DZR	PF12773.7	gi|345007218|ref|YP_004810070.1|	-	0.0004	20.3	2.6	0.00065	19.7	2.6	1.4	1	1	0	1	1	1	1	Double	zinc	ribbon
DUF35_N	PF12172.8	gi|345007218|ref|YP_004810070.1|	-	0.0021	17.9	2.2	0.003	17.4	2.2	1.3	1	0	0	1	1	1	1	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
Zn_Tnp_IS1595	PF12760.7	gi|345007218|ref|YP_004810070.1|	-	0.0029	17.5	2.2	0.38	10.8	0.1	2.3	2	0	0	2	2	2	2	Transposase	zinc-ribbon	domain
UPF0547	PF10571.9	gi|345007218|ref|YP_004810070.1|	-	0.0029	17.6	3.4	0.0029	17.6	3.4	2.2	2	1	0	2	2	2	1	Uncharacterised	protein	family	UPF0547
zf-ribbon_3	PF13248.6	gi|345007218|ref|YP_004810070.1|	-	0.0035	16.7	2.5	0.0044	16.4	1.3	1.8	2	0	0	2	2	2	1	zinc-ribbon	domain
zinc_ribbon_2	PF13240.6	gi|345007218|ref|YP_004810070.1|	-	0.0056	16.4	2.7	0.0098	15.6	2.7	1.4	1	0	0	1	1	1	1	zinc-ribbon	domain
zf-C3H2C3	PF17122.5	gi|345007218|ref|YP_004810070.1|	-	0.0067	16.4	1.5	0.013	15.5	1.5	1.5	1	0	0	1	1	1	1	Zinc-finger
DUF1272	PF06906.11	gi|345007218|ref|YP_004810070.1|	-	0.0071	16.4	2.8	0.0071	16.4	2.8	1.5	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF1272)
RNA_POL_M_15KD	PF02150.16	gi|345007218|ref|YP_004810070.1|	-	0.011	15.6	2.9	0.059	13.3	0.0	2.6	3	0	0	3	3	3	0	RNA	polymerases	M/15	Kd	subunit
Zn-ribbon_8	PF09723.10	gi|345007218|ref|YP_004810070.1|	-	0.024	14.8	6.7	0.29	11.3	5.8	2.6	2	1	0	2	2	2	0	Zinc	ribbon	domain
RecR	PF02132.15	gi|345007218|ref|YP_004810070.1|	-	0.14	11.8	2.6	0.12	11.9	0.9	1.9	2	1	0	2	2	2	0	RecR	protein
NRDD	PF13597.6	gi|345007218|ref|YP_004810070.1|	-	0.17	10.6	1.5	0.17	10.6	1.5	1.0	1	0	0	1	1	1	0	Anaerobic	ribonucleoside-triphosphate	reductase
TFIIS_C	PF01096.18	gi|345007218|ref|YP_004810070.1|	-	0.24	11.3	4.6	6.9	6.6	0.2	2.3	2	0	0	2	2	2	0	Transcription	factor	S-II	(TFIIS)
Prim_Zn_Ribbon	PF08273.12	gi|345007218|ref|YP_004810070.1|	-	0.32	11.3	5.3	1.3	9.4	1.3	2.3	1	1	1	2	2	2	0	Zinc-binding	domain	of	primase-helicase
Rubredoxin_2	PF18073.1	gi|345007218|ref|YP_004810070.1|	-	1.1	9.1	6.2	2.2	8.1	4.1	2.3	2	1	0	2	2	2	0	Rubredoxin	metal	binding	domain
ACP53EA	PF06313.11	gi|345007221|ref|YP_004810073.1|	-	0.088	13.0	0.0	0.15	12.3	0.0	1.4	1	1	0	1	1	1	0	Drosophila	ACP53EA	protein
HMA	PF00403.26	gi|345007222|ref|YP_004810074.1|	-	6.7e-14	52.1	0.7	7.4e-14	51.9	0.7	1.0	1	0	0	1	1	1	1	Heavy-metal-associated	domain
Fer2_BFD	PF04324.15	gi|345007222|ref|YP_004810074.1|	-	0.042	14.2	0.2	1.3	9.4	0.0	2.3	2	0	0	2	2	2	0	BFD-like	[2Fe-2S]	binding	domain
E1-E2_ATPase	PF00122.20	gi|345007223|ref|YP_004810075.1|	-	2.4e-47	160.8	0.0	5.5e-47	159.6	0.0	1.7	1	0	0	1	1	1	1	E1-E2	ATPase
Hydrolase	PF00702.26	gi|345007223|ref|YP_004810075.1|	-	2.1e-39	136.0	3.6	3.9e-39	135.1	3.6	1.5	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
HMA	PF00403.26	gi|345007223|ref|YP_004810075.1|	-	1.4e-08	35.0	0.1	3.2e-08	33.9	0.1	1.7	1	0	0	1	1	1	1	Heavy-metal-associated	domain
Hydrolase_3	PF08282.12	gi|345007223|ref|YP_004810075.1|	-	1.1e-06	28.6	1.1	0.00034	20.4	0.4	2.3	2	0	0	2	2	2	2	haloacid	dehalogenase-like	hydrolase
HAD	PF12710.7	gi|345007223|ref|YP_004810075.1|	-	0.00015	22.2	0.1	0.00042	20.8	0.1	1.7	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Hydrolase_6	PF13344.6	gi|345007223|ref|YP_004810075.1|	-	0.091	12.9	0.0	0.3	11.2	0.0	1.8	1	0	0	1	1	1	0	Haloacid	dehalogenase-like	hydrolase
HTH_20	PF12840.7	gi|345007224|ref|YP_004810076.1|	-	7.6e-11	41.9	1.7	8e-11	41.8	0.2	1.8	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_5	PF01022.20	gi|345007224|ref|YP_004810076.1|	-	8.2e-07	28.8	0.1	3.2e-06	26.9	0.1	2.0	1	1	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_12	PF08461.10	gi|345007224|ref|YP_004810076.1|	-	0.00011	22.0	0.5	0.00026	20.8	0.3	1.8	2	0	0	2	2	2	1	Ribonuclease	R	winged-helix	domain
Nop16	PF09420.10	gi|345007224|ref|YP_004810076.1|	-	0.00017	21.7	0.5	0.00021	21.4	0.5	1.1	1	0	0	1	1	1	1	Ribosome	biogenesis	protein	Nop16
TFIIE_alpha	PF02002.17	gi|345007224|ref|YP_004810076.1|	-	0.00041	20.2	0.6	0.011	15.6	0.2	2.3	1	1	1	2	2	2	1	TFIIE	alpha	subunit
PadR	PF03551.14	gi|345007224|ref|YP_004810076.1|	-	0.001	19.0	0.2	0.0022	17.9	0.2	1.6	1	0	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
FUR	PF01475.19	gi|345007224|ref|YP_004810076.1|	-	0.0015	18.6	0.1	0.003	17.7	0.1	1.4	1	0	0	1	1	1	1	Ferric	uptake	regulator	family
Penicillinase_R	PF03965.16	gi|345007224|ref|YP_004810076.1|	-	0.041	14.3	0.6	0.092	13.1	0.4	1.9	1	1	1	2	2	2	0	Penicillinase	repressor
Type2_restr_D3	PF16902.5	gi|345007224|ref|YP_004810076.1|	-	0.057	13.3	0.4	0.13	12.2	0.4	1.5	1	0	0	1	1	1	0	Type-2	restriction	enzyme	D3	domain
Cor1	PF04803.12	gi|345007224|ref|YP_004810076.1|	-	0.078	13.2	0.0	0.11	12.7	0.0	1.2	1	0	0	1	1	1	0	Cor1/Xlr/Xmr	conserved	region
SBP_bac_3	PF00497.20	gi|345007224|ref|YP_004810076.1|	-	0.14	11.6	0.1	0.34	10.3	0.0	1.7	1	1	0	1	1	1	0	Bacterial	extracellular	solute-binding	proteins,	family	3
Pyr_redox_2	PF07992.14	gi|345007225|ref|YP_004810077.1|	-	1.4e-59	201.8	2.9	2e-59	201.2	2.9	1.2	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_dim	PF02852.22	gi|345007225|ref|YP_004810077.1|	-	6.2e-31	106.9	2.0	8.2e-31	106.5	0.8	1.8	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase,	dimerisation	domain
Pyr_redox	PF00070.27	gi|345007225|ref|YP_004810077.1|	-	7.8e-15	55.2	3.2	7.9e-15	55.2	0.3	2.4	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_oxidored	PF12831.7	gi|345007225|ref|YP_004810077.1|	-	9.9e-06	25.1	1.4	2.7e-05	23.7	0.1	2.0	2	0	0	2	2	2	1	FAD	dependent	oxidoreductase
Pyr_redox_3	PF13738.6	gi|345007225|ref|YP_004810077.1|	-	5.7e-05	22.5	0.6	0.00039	19.8	0.0	2.1	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
GIDA	PF01134.22	gi|345007225|ref|YP_004810077.1|	-	0.0037	16.4	4.8	0.015	14.4	4.6	2.2	2	1	0	2	2	2	1	Glucose	inhibited	division	protein	A
FAD_binding_2	PF00890.24	gi|345007225|ref|YP_004810077.1|	-	0.0041	16.3	1.9	0.0067	15.5	0.1	2.2	2	1	0	3	3	3	1	FAD	binding	domain
NAD_binding_8	PF13450.6	gi|345007225|ref|YP_004810077.1|	-	0.0087	16.3	3.1	2.7	8.3	0.4	2.6	2	0	0	2	2	2	2	NAD(P)-binding	Rossmann-like	domain
HxlR	PF01638.17	gi|345007226|ref|YP_004810078.1|	-	8.6e-15	54.4	0.0	9.9e-15	54.2	0.0	1.1	1	0	0	1	1	1	1	HxlR-like	helix-turn-helix
MarR	PF01047.22	gi|345007226|ref|YP_004810078.1|	-	0.0001	22.2	0.1	0.00021	21.2	0.0	1.6	2	0	0	2	2	2	1	MarR	family
MarR_2	PF12802.7	gi|345007226|ref|YP_004810078.1|	-	0.00027	20.8	0.0	0.00043	20.1	0.0	1.3	1	0	0	1	1	1	1	MarR	family
PadR	PF03551.14	gi|345007226|ref|YP_004810078.1|	-	0.00084	19.2	0.0	0.0013	18.7	0.0	1.3	1	0	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
HTH_34	PF13601.6	gi|345007226|ref|YP_004810078.1|	-	0.0034	17.5	0.0	0.0047	17.1	0.0	1.2	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
HTH_20	PF12840.7	gi|345007226|ref|YP_004810078.1|	-	0.025	14.7	0.0	0.036	14.1	0.0	1.3	1	0	0	1	1	1	0	Helix-turn-helix	domain
FUR	PF01475.19	gi|345007226|ref|YP_004810078.1|	-	0.026	14.7	0.0	0.029	14.5	0.0	1.2	1	0	0	1	1	1	0	Ferric	uptake	regulator	family
HTH_27	PF13463.6	gi|345007226|ref|YP_004810078.1|	-	0.065	13.7	0.0	0.11	13.0	0.0	1.5	1	1	0	1	1	1	0	Winged	helix	DNA-binding	domain
Replic_Relax	PF13814.6	gi|345007226|ref|YP_004810078.1|	-	0.075	13.1	0.0	0.093	12.8	0.0	1.1	1	0	0	1	1	1	0	Replication-relaxation
DUF5518	PF17647.1	gi|345007227|ref|YP_004810079.1|	-	0.0012	19.0	4.8	0.0016	18.5	4.8	1.3	1	0	0	1	1	1	1	Family	of	unknown	function	(DUF5518)
RseC_MucC	PF04246.12	gi|345007227|ref|YP_004810079.1|	-	0.14	12.1	1.7	0.14	12.1	1.0	1.5	1	1	0	1	1	1	0	Positive	regulator	of	sigma(E),	RseC/MucC
UbiA	PF01040.18	gi|345007229|ref|YP_004810081.1|	-	4.1e-60	203.2	24.0	4.1e-60	203.2	24.0	2.7	2	1	0	2	2	2	1	UbiA	prenyltransferase	family
COX15-CtaA	PF02628.15	gi|345007229|ref|YP_004810081.1|	-	3e-09	36.4	35.4	1.2e-05	24.6	7.3	3.7	2	2	1	3	3	3	2	Cytochrome	oxidase	assembly	protein
COX3	PF00510.18	gi|345007230|ref|YP_004810082.1|	-	1.8e-17	64.0	12.6	3.5e-17	63.1	12.4	1.5	1	1	0	1	1	1	1	Cytochrome	c	oxidase	subunit	III
Cyt_c_ox_IV	PF12270.8	gi|345007230|ref|YP_004810082.1|	-	6.4e-06	26.3	0.6	6.4e-06	26.3	0.6	2.9	4	1	0	4	4	4	1	Cytochrome	c	oxidase	subunit	IV
COX2	PF00116.20	gi|345007231|ref|YP_004810083.1|	-	1.2e-14	54.2	1.9	2.2e-11	43.7	0.0	2.9	2	1	0	3	3	3	2	Cytochrome	C	oxidase	subunit	II,	periplasmic	domain
DUF4430	PF14478.6	gi|345007231|ref|YP_004810083.1|	-	0.035	14.7	0.4	5.5	7.7	0.0	2.5	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4430)
DUF4115	PF13464.6	gi|345007231|ref|YP_004810083.1|	-	0.062	13.5	0.6	0.12	12.6	0.1	1.7	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4115)
MIG-14_Wnt-bd	PF06664.12	gi|345007231|ref|YP_004810083.1|	-	0.094	11.9	0.0	0.13	11.4	0.0	1.1	1	0	0	1	1	1	0	Wnt-binding	factor	required	for	Wnt	secretion
COX1	PF00115.20	gi|345007232|ref|YP_004810084.1|	-	1.9e-106	356.5	68.0	2.3e-106	356.2	68.0	1.0	1	0	0	1	1	1	1	Cytochrome	C	and	Quinol	oxidase	polypeptide	I
DUF3285	PF11688.8	gi|345007232|ref|YP_004810084.1|	-	5	7.1	10.5	11	6.0	3.2	3.0	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3285)
TAT_signal	PF10518.9	gi|345007233|ref|YP_004810085.1|	-	4.1e-05	23.2	0.2	4.1e-05	23.2	0.2	1.9	2	0	0	2	2	2	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
Copper-bind	PF00127.20	gi|345007233|ref|YP_004810085.1|	-	0.021	15.2	0.0	0.052	14.0	0.0	1.7	2	0	0	2	2	2	0	Copper	binding	proteins,	plastocyanin/azurin	family
DDE_Tnp_1	PF01609.21	gi|345007234|ref|YP_004810086.1|	-	6.9e-33	114.1	0.3	9e-33	113.7	0.3	1.2	1	0	0	1	1	1	1	Transposase	DDE	domain
DDE_Tnp_1_4	PF13701.6	gi|345007234|ref|YP_004810086.1|	-	0.0083	14.4	0.1	0.028	12.7	0.0	1.7	1	1	1	2	2	2	1	Transposase	DDE	domain	group	1
Corona_3	PF04694.12	gi|345007234|ref|YP_004810086.1|	-	0.043	14.2	0.0	0.11	12.9	0.0	1.6	1	0	0	1	1	1	0	Coronavirus	ORF3	protein
AAA_16	PF13191.6	gi|345007235|ref|YP_004810087.1|	-	2.3e-07	31.3	0.0	4.7e-06	27.1	0.0	2.6	2	1	0	2	2	2	1	AAA	ATPase	domain
AAA_22	PF13401.6	gi|345007235|ref|YP_004810087.1|	-	3.8e-06	27.2	0.0	1e-05	25.8	0.0	1.7	2	0	0	2	2	2	1	AAA	domain
Bac_DnaA	PF00308.18	gi|345007235|ref|YP_004810087.1|	-	0.0002	21.3	0.9	0.035	13.9	0.1	2.9	1	1	1	2	2	2	1	Bacterial	dnaA	protein
AAA	PF00004.29	gi|345007235|ref|YP_004810087.1|	-	0.00024	21.6	0.0	0.0013	19.2	0.0	2.3	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
ATPase_2	PF01637.18	gi|345007235|ref|YP_004810087.1|	-	0.00028	20.9	0.0	0.0051	16.7	0.0	2.4	2	0	0	2	2	2	1	ATPase	domain	predominantly	from	Archaea
AAA_assoc_2	PF16193.5	gi|345007235|ref|YP_004810087.1|	-	0.00032	21.0	0.1	0.00083	19.6	0.1	1.7	1	0	0	1	1	1	1	AAA	C-terminal	domain
PriX	PF18689.1	gi|345007235|ref|YP_004810087.1|	-	0.011	16.0	0.0	0.028	14.7	0.0	1.6	1	0	0	1	1	1	0	Primase	X
Cdc6_C	PF09079.11	gi|345007235|ref|YP_004810087.1|	-	0.026	14.5	0.0	0.067	13.2	0.0	1.7	1	0	0	1	1	1	0	CDC6,	C	terminal	winged	helix	domain
AAA_5	PF07728.14	gi|345007235|ref|YP_004810087.1|	-	0.026	14.5	0.0	0.18	11.8	0.0	2.3	2	1	0	2	2	2	0	AAA	domain	(dynein-related	subfamily)
NB-ARC	PF00931.22	gi|345007235|ref|YP_004810087.1|	-	0.061	12.5	0.0	0.19	10.9	0.0	1.8	1	1	1	2	2	2	0	NB-ARC	domain
RNA_helicase	PF00910.22	gi|345007235|ref|YP_004810087.1|	-	0.09	13.2	0.0	0.91	9.9	0.0	2.6	2	1	0	2	2	2	0	RNA	helicase
PhoH	PF02562.16	gi|345007235|ref|YP_004810087.1|	-	0.11	12.0	0.0	7.3	6.0	0.0	2.4	2	0	0	2	2	2	0	PhoH-like	protein
NOG1_N	PF17835.1	gi|345007236|ref|YP_004810088.1|	-	0.024	14.6	0.1	0.031	14.2	0.1	1.2	1	0	0	1	1	1	0	NOG1	N-terminal	helical	domain
DUF2779	PF11074.8	gi|345007236|ref|YP_004810088.1|	-	0.038	14.5	0.2	0.053	14.0	0.2	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function(DUF2779)
HBB	PF06777.11	gi|345007236|ref|YP_004810088.1|	-	0.12	12.1	0.3	0.15	11.8	0.3	1.1	1	0	0	1	1	1	0	Helical	and	beta-bridge	domain
MarR_2	PF12802.7	gi|345007237|ref|YP_004810089.1|	-	1.7e-08	34.2	0.0	2.7e-08	33.6	0.0	1.3	1	0	0	1	1	1	1	MarR	family
MarR	PF01047.22	gi|345007237|ref|YP_004810089.1|	-	0.0069	16.3	0.0	0.012	15.5	0.0	1.4	1	0	0	1	1	1	1	MarR	family
DUF484	PF04340.12	gi|345007237|ref|YP_004810089.1|	-	0.031	14.0	0.0	0.063	13.0	0.0	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function,	DUF484
HTH_24	PF13412.6	gi|345007237|ref|YP_004810089.1|	-	0.033	13.8	0.0	0.12	12.0	0.0	1.9	1	1	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
RPA_C	PF08784.11	gi|345007237|ref|YP_004810089.1|	-	0.072	13.8	0.0	0.096	13.3	0.0	1.2	1	0	0	1	1	1	0	Replication	protein	A	C	terminal
PDDEXK_1	PF12705.7	gi|345007238|ref|YP_004810090.1|	-	2.4e-08	34.2	0.0	3.1e-08	33.9	0.0	1.2	1	0	0	1	1	1	1	PD-(D/E)XK	nuclease	superfamily
Cas_Cas4	PF01930.17	gi|345007238|ref|YP_004810090.1|	-	3.4e-08	33.8	0.0	5.5e-08	33.1	0.0	1.3	1	0	0	1	1	1	1	Domain	of	unknown	function	DUF83
PDDEXK_9	PF08011.11	gi|345007238|ref|YP_004810090.1|	-	0.013	15.4	0.0	0.027	14.4	0.0	1.4	1	0	0	1	1	1	0	PD-(D/E)XK	nuclease	superfamily
zf-RanBP	PF00641.18	gi|345007238|ref|YP_004810090.1|	-	2.5	7.5	5.3	7.4	6.0	0.4	2.8	2	0	0	2	2	2	0	Zn-finger	in	Ran	binding	protein	and	others
Vps36-NZF-N	PF16988.5	gi|345007238|ref|YP_004810090.1|	-	4.7	6.7	5.3	9.5	5.7	2.0	2.4	2	0	0	2	2	2	0	Vacuolar	protein	sorting	36	NZF-N	zinc-finger	domain
Zn_Tnp_IS1595	PF12760.7	gi|345007238|ref|YP_004810090.1|	-	4.7	7.3	7.4	33	4.6	0.5	3.5	2	1	1	3	3	3	0	Transposase	zinc-ribbon	domain
MarR_2	PF12802.7	gi|345007239|ref|YP_004810091.1|	-	0.036	14.0	0.0	0.064	13.1	0.0	1.4	1	0	0	1	1	1	0	MarR	family
HxlR	PF01638.17	gi|345007239|ref|YP_004810091.1|	-	0.064	13.1	0.0	0.098	12.5	0.0	1.3	1	0	0	1	1	1	0	HxlR-like	helix-turn-helix
Glyco_trans_4_5	PF16994.5	gi|345007239|ref|YP_004810091.1|	-	0.076	12.6	0.0	0.12	12.0	0.0	1.4	1	1	0	1	1	1	0	Glycosyl-transferase	family	4
DDE_Tnp_1	PF01609.21	gi|345007240|ref|YP_004810092.1|	-	1.9e-06	27.7	0.1	3.8e-06	26.7	0.1	1.4	1	0	0	1	1	1	1	Transposase	DDE	domain
DUF772	PF05598.11	gi|345007240|ref|YP_004810092.1|	-	0.00021	21.3	0.1	0.00087	19.3	0.1	2.1	1	0	0	1	1	1	1	Transposase	domain	(DUF772)
DDE_Tnp_1_4	PF13701.6	gi|345007240|ref|YP_004810092.1|	-	0.0058	14.9	0.0	1.3	7.2	0.0	2.2	2	0	0	2	2	2	2	Transposase	DDE	domain	group	1
AAA_21	PF13304.6	gi|345007241|ref|YP_004810093.1|	-	3.7e-12	46.7	3.1	2.9e-05	24.1	0.2	3.2	2	1	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_15	PF13175.6	gi|345007241|ref|YP_004810093.1|	-	4.5e-08	33.2	4.5	1.3e-05	25.1	0.0	3.3	3	1	0	3	3	3	2	AAA	ATPase	domain
ABC_tran	PF00005.27	gi|345007241|ref|YP_004810093.1|	-	5.2e-07	30.2	0.2	0.1	13.1	0.0	3.8	3	0	0	3	3	3	2	ABC	transporter
SMC_N	PF02463.19	gi|345007241|ref|YP_004810093.1|	-	7.5e-07	28.8	7.9	0.0045	16.5	0.0	2.4	2	1	0	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
AAA_29	PF13555.6	gi|345007241|ref|YP_004810093.1|	-	2.7e-05	23.8	0.0	5.2e-05	22.9	0.0	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_23	PF13476.6	gi|345007241|ref|YP_004810093.1|	-	0.00021	21.9	29.7	0.0012	19.4	20.6	4.6	3	1	0	3	3	3	1	AAA	domain
Baculo_PEP_C	PF04513.12	gi|345007241|ref|YP_004810093.1|	-	0.0017	18.4	3.1	0.39	10.8	0.0	4.0	4	0	0	4	4	4	1	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
AAA_16	PF13191.6	gi|345007241|ref|YP_004810093.1|	-	0.0067	16.8	0.9	0.16	12.4	0.0	3.4	2	1	0	2	2	2	1	AAA	ATPase	domain
AAA_22	PF13401.6	gi|345007241|ref|YP_004810093.1|	-	0.0074	16.6	0.7	0.079	13.2	0.0	3.0	3	1	0	3	3	3	1	AAA	domain
AAA_25	PF13481.6	gi|345007241|ref|YP_004810093.1|	-	0.011	15.3	4.4	0.44	10.1	0.0	3.6	4	0	0	4	4	4	0	AAA	domain
AAA_27	PF13514.6	gi|345007241|ref|YP_004810093.1|	-	0.011	15.3	0.0	0.011	15.3	0.0	2.5	3	0	0	3	3	2	0	AAA	domain
DUF1664	PF07889.12	gi|345007241|ref|YP_004810093.1|	-	0.012	15.7	13.1	0.84	9.7	0.0	5.3	4	1	1	5	5	5	0	Protein	of	unknown	function	(DUF1664)
SbcCD_C	PF13558.6	gi|345007241|ref|YP_004810093.1|	-	0.017	15.3	0.0	0.05	13.8	0.0	1.8	1	0	0	1	1	1	0	Putative	exonuclease	SbcCD,	C	subunit
Bac_DNA_binding	PF00216.21	gi|345007241|ref|YP_004810093.1|	-	0.032	14.4	1.0	12	6.2	0.0	2.9	3	0	0	3	3	2	0	Bacterial	DNA-binding	protein
AAA	PF00004.29	gi|345007241|ref|YP_004810093.1|	-	0.053	13.9	0.5	0.36	11.3	0.5	2.5	1	0	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
ZapB	PF06005.12	gi|345007241|ref|YP_004810093.1|	-	0.054	13.9	0.1	0.054	13.9	0.1	4.9	5	1	0	5	5	3	0	Cell	division	protein	ZapB
Img2	PF05046.14	gi|345007241|ref|YP_004810093.1|	-	0.055	13.8	0.0	0.31	11.4	0.0	2.3	2	0	0	2	2	1	0	Mitochondrial	large	subunit	ribosomal	protein	(Img2)
AAA_13	PF13166.6	gi|345007241|ref|YP_004810093.1|	-	0.065	11.9	13.4	0.46	9.1	0.0	4.5	5	0	0	5	5	5	0	AAA	domain
DUF5082	PF16888.5	gi|345007241|ref|YP_004810093.1|	-	0.071	13.4	13.3	0.55	10.5	0.7	4.4	4	1	0	4	4	4	0	Domain	of	unknown	function	(DUF5082)
RuvB_N	PF05496.12	gi|345007241|ref|YP_004810093.1|	-	0.074	12.8	0.0	0.16	11.7	0.0	1.4	1	0	0	1	1	1	0	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
Atg14	PF10186.9	gi|345007241|ref|YP_004810093.1|	-	0.12	11.5	10.5	4.6	6.2	0.3	3.4	3	0	0	3	3	3	0	Vacuolar	sorting	38	and	autophagy-related	subunit	14
DUF3450	PF11932.8	gi|345007241|ref|YP_004810093.1|	-	0.2	10.9	0.0	0.2	10.9	0.0	3.7	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF3450)
ApoLp-III	PF07464.11	gi|345007241|ref|YP_004810093.1|	-	0.22	11.6	8.4	0.75	9.9	0.1	3.8	4	0	0	4	4	3	0	Apolipophorin-III	precursor	(apoLp-III)
AAA_11	PF13086.6	gi|345007241|ref|YP_004810093.1|	-	0.3	10.9	13.7	61	3.3	0.1	4.1	2	1	0	2	2	2	0	AAA	domain
DUF4795	PF16043.5	gi|345007241|ref|YP_004810093.1|	-	0.37	10.4	18.7	0.064	12.8	0.7	3.2	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF4795)
Cluap1	PF10234.9	gi|345007241|ref|YP_004810093.1|	-	0.94	8.8	17.1	0.068	12.6	0.3	4.2	4	1	0	4	4	4	0	Clusterin-associated	protein-1
DUF16	PF01519.16	gi|345007241|ref|YP_004810093.1|	-	0.96	10.0	11.4	4.1	8.0	0.7	4.4	3	1	0	3	3	3	0	Protein	of	unknown	function	DUF16
T3SSipB	PF16535.5	gi|345007241|ref|YP_004810093.1|	-	1	9.8	3.6	9	6.8	0.0	3.4	4	0	0	4	4	3	0	Type	III	cell	invasion	protein	SipB
Snapin_Pallidin	PF14712.6	gi|345007241|ref|YP_004810093.1|	-	1.4	9.4	12.0	16	6.0	0.5	5.3	4	1	1	5	5	5	0	Snapin/Pallidin
Prefoldin_2	PF01920.20	gi|345007241|ref|YP_004810093.1|	-	3.3	7.7	22.3	1.8	8.6	2.6	5.1	5	1	0	5	5	5	0	Prefoldin	subunit
TMF_TATA_bd	PF12325.8	gi|345007241|ref|YP_004810093.1|	-	4.1	7.7	22.1	0.17	12.1	0.3	4.5	4	0	0	4	4	3	0	TATA	element	modulatory	factor	1	TATA	binding
Jnk-SapK_ap_N	PF09744.9	gi|345007241|ref|YP_004810093.1|	-	5.6	7.2	28.7	0.087	13.0	0.4	4.5	4	1	0	4	4	4	0	JNK_SAPK-associated	protein-1
PDDEXK_9	PF08011.11	gi|345007245|ref|YP_004810097.1|	-	0.026	14.4	0.0	0.056	13.3	0.0	1.5	1	0	0	1	1	1	0	PD-(D/E)XK	nuclease	superfamily
MmcB-like	PF06319.12	gi|345007245|ref|YP_004810097.1|	-	0.046	13.4	0.0	0.11	12.2	0.0	1.6	1	0	0	1	1	1	0	DNA	repair	protein	MmcB-like
HATPase_c_3	PF13589.6	gi|345007246|ref|YP_004810098.1|	-	6.1e-05	22.9	0.0	0.00013	21.8	0.0	1.6	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HNH	PF01844.23	gi|345007250|ref|YP_004810102.1|	-	3.1e-11	43.2	5.5	7.1e-11	42.1	5.5	1.6	1	0	0	1	1	1	1	HNH	endonuclease
HNH_5	PF14279.6	gi|345007250|ref|YP_004810102.1|	-	1.7e-05	24.6	4.8	0.00014	21.7	4.6	2.4	1	1	1	2	2	2	1	HNH	endonuclease
Cytochrome_C7	PF14522.6	gi|345007250|ref|YP_004810102.1|	-	0.089	12.8	5.6	0.15	12.1	5.6	1.3	1	0	0	1	1	1	0	Cytochrome	c7	and	related	cytochrome	c
Zn_ribbon_SprT	PF17283.2	gi|345007250|ref|YP_004810102.1|	-	0.26	11.2	6.7	0.14	12.1	3.1	2.2	2	0	0	2	2	2	0	SprT-like	zinc	ribbon	domain
Zn-ribbon_8	PF09723.10	gi|345007250|ref|YP_004810102.1|	-	4.8	7.4	5.1	72	3.6	5.1	2.2	1	1	0	1	1	1	0	Zinc	ribbon	domain
DDE_Tnp_1	PF01609.21	gi|345007251|ref|YP_004810103.1|	-	6.9e-33	114.1	0.3	9e-33	113.7	0.3	1.2	1	0	0	1	1	1	1	Transposase	DDE	domain
DDE_Tnp_1_4	PF13701.6	gi|345007251|ref|YP_004810103.1|	-	0.0083	14.4	0.1	0.028	12.7	0.0	1.7	1	1	1	2	2	2	1	Transposase	DDE	domain	group	1
Corona_3	PF04694.12	gi|345007251|ref|YP_004810103.1|	-	0.043	14.2	0.0	0.11	12.9	0.0	1.6	1	0	0	1	1	1	0	Coronavirus	ORF3	protein
PGF-CTERM	PF18204.1	gi|345007252|ref|YP_004810104.1|	-	8.2e-05	22.4	2.7	0.00023	21.0	2.7	1.8	1	0	0	1	1	1	1	PGF-CTERM	motif
CENP-B_dimeris	PF09026.10	gi|345007252|ref|YP_004810104.1|	-	0.014	15.7	0.3	0.033	14.6	0.3	1.6	1	0	0	1	1	1	0	Centromere	protein	B	dimerisation	domain
DUF1616	PF07760.11	gi|345007252|ref|YP_004810104.1|	-	0.074	12.4	11.0	0.11	11.9	5.5	2.7	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF1616)
Big_7	PF17957.1	gi|345007252|ref|YP_004810104.1|	-	1.6	9.5	11.4	0.37	11.6	6.6	2.5	2	1	0	2	2	2	0	Bacterial	Ig	domain
BACON	PF13004.7	gi|345007252|ref|YP_004810104.1|	-	3.3	7.8	7.8	2	8.5	0.1	3.0	2	1	0	2	2	2	0	Putative	binding	domain,	N-terminal
DUF4179	PF13786.6	gi|345007252|ref|YP_004810104.1|	-	7.1	7.2	8.0	0.19	12.2	1.0	2.1	2	1	0	2	2	2	0	Domain	of	unknown	function	(DUF4179)
BatA	PF07584.11	gi|345007253|ref|YP_004810105.1|	-	0.024	15.0	0.2	0.33	11.3	0.0	2.0	2	0	0	2	2	2	0	Aerotolerance	regulator	N-terminal
DUF3043	PF11241.8	gi|345007253|ref|YP_004810105.1|	-	0.1	12.6	1.0	0.13	12.3	1.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3043)
ParE_toxin	PF05016.15	gi|345007256|ref|YP_004810108.1|	-	0.043	14.4	0.3	0.091	13.4	0.3	1.5	1	1	0	1	1	1	0	ParE	toxin	of	type	II	toxin-antitoxin	system,	parDE
RHH_1	PF01402.21	gi|345007257|ref|YP_004810109.1|	-	0.0027	17.6	0.0	0.0046	16.8	0.0	1.4	1	0	0	1	1	1	1	Ribbon-helix-helix	protein,	copG	family
RHH_8	PF17723.1	gi|345007257|ref|YP_004810109.1|	-	0.033	14.4	0.1	0.042	14.0	0.1	1.2	1	1	0	1	1	1	0	Ribbon-Helix-Helix	transcriptional	regulator	family
SHOCT	PF09851.9	gi|345007259|ref|YP_004810111.1|	-	0.078	12.7	0.2	0.078	12.7	0.2	2.7	4	0	0	4	4	4	0	Short	C-terminal	domain
ZapD	PF07072.11	gi|345007260|ref|YP_004810112.1|	-	0.11	12.2	0.0	0.3	10.8	0.0	1.6	2	0	0	2	2	2	0	Cell	division	protein
AAA_31	PF13614.6	gi|345007261|ref|YP_004810113.1|	-	1.2e-28	100.2	0.0	1.8e-28	99.7	0.0	1.1	1	0	0	1	1	1	1	AAA	domain
CbiA	PF01656.23	gi|345007261|ref|YP_004810113.1|	-	5.7e-11	42.6	0.0	1.3e-10	41.5	0.0	1.6	1	1	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
ParA	PF10609.9	gi|345007261|ref|YP_004810113.1|	-	2.5e-08	33.7	0.3	1.8e-07	30.8	0.1	2.0	2	0	0	2	2	2	1	NUBPL	iron-transfer	P-loop	NTPase
MipZ	PF09140.11	gi|345007261|ref|YP_004810113.1|	-	1.2e-07	31.3	0.2	8.5e-05	22.0	0.3	3.0	2	1	0	2	2	2	1	ATPase	MipZ
CBP_BcsQ	PF06564.12	gi|345007261|ref|YP_004810113.1|	-	1.1e-06	28.3	0.0	2e-06	27.5	0.0	1.3	1	0	0	1	1	1	1	Cellulose	biosynthesis	protein	BcsQ
ArsA_ATPase	PF02374.15	gi|345007261|ref|YP_004810113.1|	-	0.00018	20.8	0.0	0.0019	17.4	0.0	2.3	3	0	0	3	3	3	1	Anion-transporting	ATPase
VirC1	PF07015.11	gi|345007261|ref|YP_004810113.1|	-	0.0026	17.1	0.0	0.79	9.0	0.0	2.2	2	0	0	2	2	2	2	VirC1	protein
Fer4_NifH	PF00142.18	gi|345007261|ref|YP_004810113.1|	-	0.0087	15.5	0.0	0.29	10.5	0.0	2.3	2	0	0	2	2	2	1	4Fe-4S	iron	sulfur	cluster	binding	proteins,	NifH/frxC	family
CLP1_P	PF16575.5	gi|345007261|ref|YP_004810113.1|	-	0.012	15.4	0.1	0.032	14.0	0.0	1.7	2	0	0	2	2	2	0	mRNA	cleavage	and	polyadenylation	factor	CLP1	P-loop
APS_kinase	PF01583.20	gi|345007261|ref|YP_004810113.1|	-	0.012	15.5	0.1	0.026	14.4	0.1	1.5	1	0	0	1	1	1	0	Adenylylsulphate	kinase
Glyco_transf_4	PF13439.6	gi|345007261|ref|YP_004810113.1|	-	0.087	12.8	0.0	2.1	8.3	0.0	2.1	2	0	0	2	2	2	0	Glycosyltransferase	Family	4
SRP54	PF00448.22	gi|345007261|ref|YP_004810113.1|	-	0.12	12.0	0.1	4.4	6.9	0.0	2.4	2	0	0	2	2	2	0	SRP54-type	protein,	GTPase	domain
HTH_23	PF13384.6	gi|345007262|ref|YP_004810114.1|	-	3.8e-05	23.3	0.2	0.00016	21.3	0.0	2.1	2	0	0	2	2	2	1	Homeodomain-like	domain
MarR_2	PF12802.7	gi|345007262|ref|YP_004810114.1|	-	0.00035	20.4	0.2	0.00083	19.2	0.1	1.7	1	1	1	2	2	2	1	MarR	family
HTH_28	PF13518.6	gi|345007262|ref|YP_004810114.1|	-	0.00042	20.4	1.7	0.00068	19.7	0.0	2.3	3	0	0	3	3	2	1	Helix-turn-helix	domain
HTH_1	PF00126.27	gi|345007262|ref|YP_004810114.1|	-	0.00075	19.4	0.6	0.0019	18.1	0.1	1.9	2	0	0	2	2	2	1	Bacterial	regulatory	helix-turn-helix	protein,	lysR	family
Fe_dep_repress	PF01325.19	gi|345007262|ref|YP_004810114.1|	-	0.0016	18.6	0.0	0.011	15.9	0.0	2.1	2	0	0	2	2	2	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
Rrf2	PF02082.20	gi|345007262|ref|YP_004810114.1|	-	0.0043	17.4	0.0	0.052	13.9	0.0	2.3	2	0	0	2	2	2	1	Transcriptional	regulator
GntR	PF00392.21	gi|345007262|ref|YP_004810114.1|	-	0.0044	16.6	0.1	0.017	14.8	0.0	1.9	2	0	0	2	2	2	1	Bacterial	regulatory	proteins,	gntR	family
TrmB	PF01978.19	gi|345007262|ref|YP_004810114.1|	-	0.0061	16.4	0.0	0.013	15.4	0.0	1.5	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_24	PF13412.6	gi|345007262|ref|YP_004810114.1|	-	0.0077	15.8	0.0	0.015	14.8	0.0	1.5	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_Crp_2	PF13545.6	gi|345007262|ref|YP_004810114.1|	-	0.01	15.8	0.1	0.034	14.1	0.0	1.8	2	0	0	2	2	2	0	Crp-like	helix-turn-helix	domain
RPA_C	PF08784.11	gi|345007262|ref|YP_004810114.1|	-	0.016	15.9	0.0	0.029	15.0	0.0	1.5	1	0	0	1	1	1	0	Replication	protein	A	C	terminal
HTH_30	PF13556.6	gi|345007262|ref|YP_004810114.1|	-	0.028	14.2	0.1	0.055	13.3	0.1	1.5	1	0	0	1	1	1	0	PucR	C-terminal	helix-turn-helix	domain
DUF2250	PF10007.9	gi|345007262|ref|YP_004810114.1|	-	0.041	14.0	0.0	0.069	13.3	0.0	1.3	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
HTH_Tnp_ISL3	PF13542.6	gi|345007262|ref|YP_004810114.1|	-	0.11	11.9	0.1	0.41	10.1	0.1	1.9	2	0	0	2	2	2	0	Helix-turn-helix	domain	of	transposase	family	ISL3
LPD11	PF18824.1	gi|345007262|ref|YP_004810114.1|	-	0.41	10.8	1.9	18	5.5	0.4	2.4	1	1	1	2	2	2	0	Large	polyvalent	protein-associated	domain	11
DNA_methylase	PF00145.17	gi|345007263|ref|YP_004810115.1|	-	3.5e-61	207.4	0.0	5.2e-61	206.8	0.0	1.2	1	0	0	1	1	1	1	C-5	cytosine-specific	DNA	methylase
Methyltransf_15	PF09445.10	gi|345007263|ref|YP_004810115.1|	-	0.0044	16.6	0.0	0.0083	15.7	0.0	1.4	1	0	0	1	1	1	1	RNA	cap	guanine-N2	methyltransferase
MTS	PF05175.14	gi|345007263|ref|YP_004810115.1|	-	0.011	15.3	0.0	0.019	14.6	0.0	1.2	1	0	0	1	1	1	0	Methyltransferase	small	domain
Met_10	PF02475.16	gi|345007263|ref|YP_004810115.1|	-	0.13	12.0	0.0	0.2	11.4	0.0	1.2	1	0	0	1	1	1	0	Met-10+	like-protein
PSRT	PF07636.11	gi|345007263|ref|YP_004810115.1|	-	0.37	10.5	1.4	0.86	9.3	1.4	1.5	1	0	0	1	1	1	0	PSRT
Helicase_C	PF00271.31	gi|345007266|ref|YP_004810118.1|	-	1e-07	32.3	0.0	1.8e-07	31.4	0.0	1.4	1	0	0	1	1	1	1	Helicase	conserved	C-terminal	domain
DEAD	PF00270.29	gi|345007266|ref|YP_004810118.1|	-	0.00016	21.5	0.0	0.13	12.0	0.0	2.3	2	0	0	2	2	2	2	DEAD/DEAH	box	helicase
Nudix_N_2	PF14803.6	gi|345007266|ref|YP_004810118.1|	-	0.049	13.5	2.6	0.11	12.4	2.6	1.6	1	0	0	1	1	1	0	Nudix	N-terminal
zf_PR_Knuckle	PF18445.1	gi|345007267|ref|YP_004810119.1|	-	0.31	10.9	1.3	1.8	8.4	0.1	2.4	2	0	0	2	2	2	0	PR	zinc	knuckle	motif
PLDc_2	PF13091.6	gi|345007268|ref|YP_004810120.1|	-	5e-13	49.1	0.0	1e-12	48.1	0.0	1.5	1	1	0	1	1	1	1	PLD-like	domain
PLDc	PF00614.22	gi|345007268|ref|YP_004810120.1|	-	1.9e-05	24.6	0.0	6.7e-05	22.9	0.0	1.8	1	0	0	1	1	1	1	Phospholipase	D	Active	site	motif
MarR_2	PF12802.7	gi|345007268|ref|YP_004810120.1|	-	0.052	13.4	0.3	0.15	12.0	0.3	1.8	1	0	0	1	1	1	0	MarR	family
Eco57I	PF07669.11	gi|345007269|ref|YP_004810121.1|	-	2e-16	60.4	0.0	7.3e-16	58.6	0.0	2.0	1	0	0	1	1	1	1	Eco57I	restriction-modification	methylase
TaqI_C	PF12950.7	gi|345007269|ref|YP_004810121.1|	-	6.5e-15	55.3	0.1	1.4e-14	54.1	0.1	1.6	1	0	0	1	1	1	1	TaqI-like	C-terminal	specificity	domain
N6_Mtase	PF02384.16	gi|345007269|ref|YP_004810121.1|	-	3.6e-09	36.3	0.0	0.0018	17.6	0.0	2.9	2	1	0	2	2	2	2	N-6	DNA	Methylase
Cofac_haem_bdg	PF04187.13	gi|345007269|ref|YP_004810121.1|	-	0.021	14.8	1.3	0.05	13.6	1.3	1.6	1	0	0	1	1	1	0	Haem-binding	uptake,	Tiki	superfamily,	ChaN
HSDR_N_2	PF13588.6	gi|345007269|ref|YP_004810121.1|	-	0.041	13.9	0.0	0.1	12.6	0.0	1.7	1	0	0	1	1	1	0	Type	I	restriction	enzyme	R	protein	N	terminus	(HSDR_N)
RE_AspBHI_N	PF18062.1	gi|345007270|ref|YP_004810122.1|	-	2.8e-53	180.2	0.0	3.7e-53	179.8	0.0	1.1	1	0	0	1	1	1	1	Restriction	endonuclease	AspBHI	N-terminal
HNH_2	PF13391.6	gi|345007270|ref|YP_004810122.1|	-	3.1e-07	30.4	0.2	9.3e-07	28.9	0.2	1.9	1	1	0	1	1	1	1	HNH	endonuclease
HTH_20	PF12840.7	gi|345007272|ref|YP_004810124.1|	-	6.1e-05	23.0	0.0	0.0001	22.2	0.0	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_5	PF01022.20	gi|345007272|ref|YP_004810124.1|	-	0.0028	17.5	0.0	0.0042	16.9	0.0	1.3	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
YnfE	PF17452.2	gi|345007272|ref|YP_004810124.1|	-	0.0042	17.3	0.3	0.54	10.6	0.2	2.2	2	0	0	2	2	2	1	Uncharacterized	YnfE-like
TrmB	PF01978.19	gi|345007272|ref|YP_004810124.1|	-	0.0069	16.2	0.0	0.011	15.6	0.0	1.3	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
MarR_2	PF12802.7	gi|345007272|ref|YP_004810124.1|	-	0.01	15.7	0.0	0.026	14.4	0.0	1.7	1	0	0	1	1	1	0	MarR	family
MarR	PF01047.22	gi|345007272|ref|YP_004810124.1|	-	0.034	14.1	0.0	0.075	13.0	0.0	1.6	1	0	0	1	1	1	0	MarR	family
CSN8_PSD8_EIF3K	PF10075.9	gi|345007272|ref|YP_004810124.1|	-	0.13	12.2	0.0	0.24	11.4	0.0	1.4	1	0	0	1	1	1	0	CSN8/PSMD8/EIF3K	family
DUF1275	PF06912.11	gi|345007274|ref|YP_004810126.1|	-	0.14	12.1	0.7	0.22	11.4	0.7	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1275)
CPP1-like	PF11833.8	gi|345007274|ref|YP_004810126.1|	-	0.33	10.6	1.2	0.55	9.9	1.2	1.3	1	0	0	1	1	1	0	Protein	CHAPERONE-LIKE	PROTEIN	OF	POR1-like
Helicase_C	PF00271.31	gi|345007275|ref|YP_004810127.1|	-	2.7e-23	82.4	0.0	8e-23	80.9	0.0	1.8	1	0	0	1	1	1	1	Helicase	conserved	C-terminal	domain
SNF2_N	PF00176.23	gi|345007275|ref|YP_004810127.1|	-	6.4e-18	64.6	0.0	5e-16	58.4	0.0	2.2	1	1	0	1	1	1	1	SNF2	family	N-terminal	domain
ResIII	PF04851.15	gi|345007275|ref|YP_004810127.1|	-	7.9e-12	45.5	0.0	2.2e-11	44.1	0.0	1.8	1	0	0	1	1	1	1	Type	III	restriction	enzyme,	res	subunit
RapA_C	PF12137.8	gi|345007275|ref|YP_004810127.1|	-	1.2e-06	27.8	2.4	8.9e-06	25.0	0.0	2.5	2	0	0	2	2	2	1	RNA	polymerase	recycling	family	C-terminal
AAA_34	PF13872.6	gi|345007275|ref|YP_004810127.1|	-	0.0099	14.8	0.1	0.024	13.5	0.1	1.6	1	1	0	1	1	1	1	P-loop	containing	NTP	hydrolase	pore-1
RuvB_N	PF05496.12	gi|345007275|ref|YP_004810127.1|	-	0.055	13.2	0.2	0.84	9.4	0.0	2.4	2	0	0	2	2	2	0	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
DNA_methylase	PF00145.17	gi|345007276|ref|YP_004810128.1|	-	1.9e-59	201.7	0.0	1.3e-29	103.7	0.0	2.3	2	1	0	2	2	2	2	C-5	cytosine-specific	DNA	methylase
MTS	PF05175.14	gi|345007276|ref|YP_004810128.1|	-	0.00018	21.1	0.0	0.00042	19.9	0.0	1.5	2	0	0	2	2	2	1	Methyltransferase	small	domain
Methyltransf_25	PF13649.6	gi|345007276|ref|YP_004810128.1|	-	0.046	14.4	0.0	0.087	13.5	0.0	1.4	1	0	0	1	1	1	0	Methyltransferase	domain
PrmA	PF06325.13	gi|345007276|ref|YP_004810128.1|	-	0.055	12.9	0.0	0.11	11.9	0.0	1.5	1	0	0	1	1	1	0	Ribosomal	protein	L11	methyltransferase	(PrmA)
Methyltransf_15	PF09445.10	gi|345007276|ref|YP_004810128.1|	-	0.24	10.9	0.0	0.37	10.3	0.0	1.2	1	0	0	1	1	1	0	RNA	cap	guanine-N2	methyltransferase
DUF4944	PF16302.5	gi|345007277|ref|YP_004810129.1|	-	0.04	14.0	0.5	0.089	12.9	0.2	1.8	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4944)
Ntox5	PF15543.6	gi|345007277|ref|YP_004810129.1|	-	0.14	12.0	0.0	0.22	11.4	0.0	1.3	1	0	0	1	1	1	0	Bacterial	toxin	5
DDE_Tnp_1	PF01609.21	gi|345007280|ref|YP_004810132.1|	-	0.031	13.9	0.1	0.085	12.5	0.1	1.7	1	1	0	1	1	1	0	Transposase	DDE	domain
Cdc6_C	PF09079.11	gi|345007281|ref|YP_004810133.1|	-	8.2e-13	48.1	0.0	3.3e-12	46.2	0.0	2.1	3	0	0	3	3	1	1	CDC6,	C	terminal	winged	helix	domain
AAA	PF00004.29	gi|345007281|ref|YP_004810133.1|	-	1.2e-10	41.9	0.0	3.5e-10	40.4	0.0	1.8	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_16	PF13191.6	gi|345007281|ref|YP_004810133.1|	-	2.2e-10	41.2	0.0	7.6e-10	39.4	0.0	1.9	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_22	PF13401.6	gi|345007281|ref|YP_004810133.1|	-	1.4e-07	31.9	0.0	3.7e-07	30.5	0.0	1.7	1	0	0	1	1	1	1	AAA	domain
DUF815	PF05673.13	gi|345007281|ref|YP_004810133.1|	-	4e-06	26.2	0.0	8.8e-06	25.1	0.0	1.5	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF815)
ATPase_2	PF01637.18	gi|345007281|ref|YP_004810133.1|	-	6.7e-05	22.9	0.0	0.00017	21.6	0.0	1.7	1	0	0	1	1	1	1	ATPase	domain	predominantly	from	Archaea
TniB	PF05621.11	gi|345007281|ref|YP_004810133.1|	-	0.00025	20.5	0.0	0.00044	19.7	0.0	1.3	1	0	0	1	1	1	1	Bacterial	TniB	protein
NACHT	PF05729.12	gi|345007281|ref|YP_004810133.1|	-	0.00097	19.1	0.0	0.0019	18.1	0.0	1.4	1	0	0	1	1	1	1	NACHT	domain
Sigma54_activat	PF00158.26	gi|345007281|ref|YP_004810133.1|	-	0.019	14.7	0.0	0.033	13.9	0.0	1.4	1	0	0	1	1	1	0	Sigma-54	interaction	domain
AAA_7	PF12775.7	gi|345007281|ref|YP_004810133.1|	-	0.031	13.8	0.0	0.13	11.7	0.0	1.9	2	0	0	2	2	2	0	P-loop	containing	dynein	motor	region
AAA_30	PF13604.6	gi|345007281|ref|YP_004810133.1|	-	0.06	13.1	0.6	0.19	11.5	0.1	2.1	2	1	0	2	2	2	0	AAA	domain
IstB_IS21	PF01695.17	gi|345007281|ref|YP_004810133.1|	-	0.086	12.6	0.1	0.61	9.8	0.0	2.3	3	0	0	3	3	3	0	IstB-like	ATP	binding	protein
Mg_chelatase	PF01078.21	gi|345007281|ref|YP_004810133.1|	-	0.087	12.2	0.0	0.26	10.6	0.0	1.7	2	0	0	2	2	2	0	Magnesium	chelatase,	subunit	ChlI
AAA_29	PF13555.6	gi|345007281|ref|YP_004810133.1|	-	0.098	12.4	0.0	0.23	11.2	0.0	1.5	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
FTCD_N	PF07837.12	gi|345007281|ref|YP_004810133.1|	-	0.14	11.9	0.0	0.33	10.7	0.0	1.5	1	0	0	1	1	1	0	Formiminotransferase	domain,	N-terminal	subdomain
AAA_assoc_2	PF16193.5	gi|345007281|ref|YP_004810133.1|	-	0.18	12.1	1.2	1	9.7	0.1	2.7	2	1	0	2	2	2	0	AAA	C-terminal	domain
SWIM	PF04434.17	gi|345007283|ref|YP_004810135.1|	-	0.015	15.0	0.6	0.046	13.4	0.6	1.9	1	1	0	1	1	1	0	SWIM	zinc	finger
Peptidase_M78	PF06114.13	gi|345007284|ref|YP_004810136.1|	-	5.2e-06	26.4	0.0	9.2e-06	25.6	0.0	1.4	1	0	0	1	1	1	1	IrrE	N-terminal-like	domain
Amidase	PF01425.21	gi|345007284|ref|YP_004810136.1|	-	0.021	13.8	0.0	0.033	13.2	0.0	1.3	1	0	0	1	1	1	0	Amidase
SprT-like	PF10263.9	gi|345007284|ref|YP_004810136.1|	-	0.022	14.6	0.0	0.063	13.1	0.0	1.8	1	1	0	1	1	1	0	SprT-like	family
DUF2268	PF10026.9	gi|345007284|ref|YP_004810136.1|	-	0.054	13.1	0.0	0.13	11.9	0.0	1.5	1	0	0	1	1	1	0	Predicted	Zn-dependent	protease	(DUF2268)
OGG_N	PF07934.12	gi|345007284|ref|YP_004810136.1|	-	0.073	13.2	0.0	0.12	12.5	0.0	1.5	1	0	0	1	1	1	0	8-oxoguanine	DNA	glycosylase,	N-terminal	domain
AAA	PF00004.29	gi|345007289|ref|YP_004810141.1|	-	3e-42	144.2	0.0	5.1e-42	143.4	0.0	1.4	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_lid_3	PF17862.1	gi|345007289|ref|YP_004810141.1|	-	5.4e-16	58.1	0.3	1.6e-15	56.6	0.3	1.9	1	1	0	1	1	1	1	AAA+	lid	domain
AAA_25	PF13481.6	gi|345007289|ref|YP_004810141.1|	-	3.4e-07	30.0	1.6	0.002	17.7	0.3	2.3	1	1	1	2	2	2	2	AAA	domain
AAA_16	PF13191.6	gi|345007289|ref|YP_004810141.1|	-	7.7e-07	29.6	0.6	0.06	13.7	0.0	2.5	1	1	1	2	2	2	2	AAA	ATPase	domain
AAA_2	PF07724.14	gi|345007289|ref|YP_004810141.1|	-	8.4e-06	26.0	0.0	2e-05	24.8	0.0	1.6	1	0	0	1	1	1	1	AAA	domain	(Cdc48	subfamily)
AAA_22	PF13401.6	gi|345007289|ref|YP_004810141.1|	-	2.2e-05	24.8	0.5	0.085	13.1	0.0	2.4	1	1	1	2	2	2	2	AAA	domain
RuvB_N	PF05496.12	gi|345007289|ref|YP_004810141.1|	-	0.00021	21.1	0.0	0.00049	19.9	0.0	1.7	1	1	0	1	1	1	1	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
AAA_24	PF13479.6	gi|345007289|ref|YP_004810141.1|	-	0.00034	20.4	0.0	0.00092	19.0	0.0	1.7	1	0	0	1	1	1	1	AAA	domain
AAA_33	PF13671.6	gi|345007289|ref|YP_004810141.1|	-	0.00083	19.5	0.0	0.0017	18.5	0.0	1.6	1	0	0	1	1	1	1	AAA	domain
TIP49	PF06068.13	gi|345007289|ref|YP_004810141.1|	-	0.0018	17.5	0.0	0.0049	16.1	0.0	1.7	1	1	0	1	1	1	1	TIP49	P-loop	domain
Mg_chelatase	PF01078.21	gi|345007289|ref|YP_004810141.1|	-	0.0033	16.8	0.0	0.0078	15.6	0.0	1.5	1	0	0	1	1	1	1	Magnesium	chelatase,	subunit	ChlI
AAA_18	PF13238.6	gi|345007289|ref|YP_004810141.1|	-	0.0065	17.0	0.0	0.019	15.5	0.0	1.9	1	0	0	1	1	1	1	AAA	domain
AAA_5	PF07728.14	gi|345007289|ref|YP_004810141.1|	-	0.0094	16.0	0.2	0.086	12.8	0.2	2.4	1	1	0	1	1	1	1	AAA	domain	(dynein-related	subfamily)
RNA_helicase	PF00910.22	gi|345007289|ref|YP_004810141.1|	-	0.011	16.0	0.0	0.036	14.5	0.0	1.9	2	0	0	2	2	1	0	RNA	helicase
IstB_IS21	PF01695.17	gi|345007289|ref|YP_004810141.1|	-	0.024	14.4	0.0	0.065	13.0	0.0	1.7	1	1	0	1	1	1	0	IstB-like	ATP	binding	protein
NACHT	PF05729.12	gi|345007289|ref|YP_004810141.1|	-	0.031	14.2	0.1	0.1	12.5	0.0	1.8	2	0	0	2	2	2	0	NACHT	domain
AAA_28	PF13521.6	gi|345007289|ref|YP_004810141.1|	-	0.049	13.9	0.0	0.17	12.1	0.0	1.9	1	1	0	1	1	1	0	AAA	domain
ATPase_2	PF01637.18	gi|345007289|ref|YP_004810141.1|	-	0.055	13.4	0.1	0.64	9.9	0.1	2.3	1	1	0	1	1	1	0	ATPase	domain	predominantly	from	Archaea
Parvo_NS1	PF01057.17	gi|345007289|ref|YP_004810141.1|	-	0.11	11.6	0.0	0.18	10.8	0.0	1.3	1	0	0	1	1	1	0	Parvovirus	non-structural	protein	NS1
KAP_NTPase	PF07693.14	gi|345007289|ref|YP_004810141.1|	-	0.11	11.7	0.0	1.2	8.3	0.0	2.1	2	0	0	2	2	2	0	KAP	family	P-loop	domain
AAA_7	PF12775.7	gi|345007289|ref|YP_004810141.1|	-	0.11	12.0	0.0	0.38	10.3	0.0	1.8	2	0	0	2	2	2	0	P-loop	containing	dynein	motor	region
TsaE	PF02367.17	gi|345007289|ref|YP_004810141.1|	-	0.12	12.4	0.0	0.32	11.0	0.0	1.7	2	0	0	2	2	2	0	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
Phage_B	PF02304.15	gi|345007290|ref|YP_004810142.1|	-	0.063	13.7	0.0	0.17	12.3	0.0	1.7	1	0	0	1	1	1	0	Scaffold	protein	B
HATPase_c	PF02518.26	gi|345007293|ref|YP_004810145.1|	-	1.2e-17	64.5	0.1	2.7e-17	63.3	0.1	1.6	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
PAS_9	PF13426.7	gi|345007293|ref|YP_004810145.1|	-	6.3e-16	58.5	0.0	1.4e-15	57.4	0.0	1.6	1	0	0	1	1	1	1	PAS	domain
PAS	PF00989.25	gi|345007293|ref|YP_004810145.1|	-	3.5e-13	49.6	0.0	1.9e-12	47.2	0.0	2.0	2	0	0	2	2	2	1	PAS	fold
HisKA	PF00512.25	gi|345007293|ref|YP_004810145.1|	-	4.5e-12	45.8	0.9	4.5e-12	45.8	0.9	3.4	4	0	0	4	4	4	1	His	Kinase	A	(phospho-acceptor)	domain
PAS_4	PF08448.10	gi|345007293|ref|YP_004810145.1|	-	4.1e-11	43.1	0.3	1.1e-10	41.7	0.0	1.9	2	0	0	2	2	2	1	PAS	fold
PAS_8	PF13188.7	gi|345007293|ref|YP_004810145.1|	-	4.2e-08	33.0	0.0	1.8e-07	31.0	0.0	2.1	1	0	0	1	1	1	1	PAS	domain
PAS_3	PF08447.12	gi|345007293|ref|YP_004810145.1|	-	2.3e-05	24.6	0.0	5.1e-05	23.5	0.0	1.6	1	0	0	1	1	1	1	PAS	fold
PAS_7	PF12860.7	gi|345007293|ref|YP_004810145.1|	-	0.00021	21.4	0.1	0.00071	19.7	0.0	2.0	2	0	0	2	2	2	1	PAS	fold
PAS_12	PF18095.1	gi|345007293|ref|YP_004810145.1|	-	0.0041	16.8	0.0	0.0081	15.8	0.0	1.5	1	0	0	1	1	1	1	UPF0242	C-terminal	PAS-like	domain
HATPase_c_3	PF13589.6	gi|345007293|ref|YP_004810145.1|	-	0.016	15.1	0.0	0.039	13.8	0.0	1.6	1	0	0	1	1	1	0	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
DAHP_synth_1	PF00793.20	gi|345007293|ref|YP_004810145.1|	-	0.065	12.1	0.0	0.1	11.5	0.0	1.2	1	0	0	1	1	1	0	DAHP	synthetase	I	family
UPF0270	PF06794.12	gi|345007293|ref|YP_004810145.1|	-	0.16	12.1	2.2	18	5.5	0.1	3.3	3	0	0	3	3	3	0	Uncharacterised	protein	family	(UPF0270)
Mrr_cat	PF04471.12	gi|345007294|ref|YP_004810146.1|	-	1.9e-27	95.6	0.1	5.9e-27	94.0	0.0	1.8	2	0	0	2	2	2	1	Restriction	endonuclease
Siva	PF05458.12	gi|345007294|ref|YP_004810146.1|	-	0.0021	17.7	2.6	0.0034	17.1	2.6	1.3	1	0	0	1	1	1	1	Cd27	binding	protein	(Siva)
DZR	PF12773.7	gi|345007294|ref|YP_004810146.1|	-	0.0057	16.6	0.1	0.0057	16.6	0.1	2.0	2	0	0	2	2	2	1	Double	zinc	ribbon
Mrr_cat_2	PF13156.6	gi|345007294|ref|YP_004810146.1|	-	0.015	15.2	0.0	0.029	14.3	0.0	1.4	1	0	0	1	1	1	0	Restriction	endonuclease
zinc_ribbon_15	PF17032.5	gi|345007294|ref|YP_004810146.1|	-	0.069	13.9	0.5	0.069	13.9	0.5	2.1	2	0	0	2	2	2	0	zinc-ribbon	family
zinc_ribbon_2	PF13240.6	gi|345007294|ref|YP_004810146.1|	-	0.15	11.9	1.7	0.39	10.5	1.7	1.8	1	0	0	1	1	1	0	zinc-ribbon	domain
NOB1_Zn_bind	PF08772.11	gi|345007294|ref|YP_004810146.1|	-	2.6	8.3	6.2	7.8	6.7	6.2	1.9	1	1	0	1	1	1	0	Nin	one	binding	(NOB1)	Zn-ribbon	like
HTH_20	PF12840.7	gi|345007296|ref|YP_004810148.1|	-	2.2e-08	34.0	0.5	0.0029	17.7	0.0	2.5	2	0	0	2	2	2	2	Helix-turn-helix	domain
HTH_27	PF13463.6	gi|345007296|ref|YP_004810148.1|	-	4.4e-07	30.3	0.5	0.00012	22.5	0.1	3.0	3	0	0	3	3	3	1	Winged	helix	DNA-binding	domain
MarR_2	PF12802.7	gi|345007296|ref|YP_004810148.1|	-	2.8e-05	23.9	0.2	0.29	11.1	0.1	2.6	2	0	0	2	2	2	2	MarR	family
TrmB	PF01978.19	gi|345007296|ref|YP_004810148.1|	-	7.8e-05	22.5	0.0	0.051	13.5	0.0	2.4	2	0	0	2	2	2	2	Sugar-specific	transcriptional	regulator	TrmB
Rrf2	PF02082.20	gi|345007296|ref|YP_004810148.1|	-	0.0017	18.7	0.0	0.09	13.1	0.0	2.4	2	0	0	2	2	2	1	Transcriptional	regulator
HTH_10	PF04967.12	gi|345007296|ref|YP_004810148.1|	-	0.028	14.2	0.0	2.6	7.9	0.0	2.6	2	0	0	2	2	2	0	HTH	DNA	binding	domain
MarR	PF01047.22	gi|345007296|ref|YP_004810148.1|	-	0.058	13.3	0.0	0.17	11.9	0.0	1.9	2	0	0	2	2	2	0	MarR	family
HTH_11	PF08279.12	gi|345007296|ref|YP_004810148.1|	-	0.11	12.4	0.0	6.9	6.7	0.0	2.3	2	0	0	2	2	2	0	HTH	domain
DAG_kinase_N	PF14513.6	gi|345007296|ref|YP_004810148.1|	-	0.14	12.3	0.0	0.23	11.6	0.0	1.2	1	0	0	1	1	1	0	Diacylglycerol	kinase	N-terminus
GntR	PF00392.21	gi|345007296|ref|YP_004810148.1|	-	0.18	11.5	0.4	7	6.4	0.0	3.1	4	0	0	4	4	4	0	Bacterial	regulatory	proteins,	gntR	family
RPA_interact_C	PF14768.6	gi|345007297|ref|YP_004810149.1|	-	0.0039	17.7	0.8	0.0053	17.3	0.8	1.2	1	0	0	1	1	1	1	Replication	protein	A	interacting	C-terminal
zinc_ribbon_2	PF13240.6	gi|345007297|ref|YP_004810149.1|	-	0.0084	15.8	1.3	3.8	7.3	0.1	2.4	2	0	0	2	2	2	2	zinc-ribbon	domain
Nudix_N_2	PF14803.6	gi|345007297|ref|YP_004810149.1|	-	0.018	15.0	3.3	2.1	8.4	0.1	2.7	3	0	0	3	3	3	0	Nudix	N-terminal
DZR	PF12773.7	gi|345007297|ref|YP_004810149.1|	-	0.02	14.9	1.2	0.032	14.3	1.2	1.3	1	0	0	1	1	1	0	Double	zinc	ribbon
DUF2318	PF10080.9	gi|345007297|ref|YP_004810149.1|	-	0.025	14.7	0.1	0.032	14.3	0.1	1.2	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2318)
GFA	PF04828.14	gi|345007297|ref|YP_004810149.1|	-	0.033	14.5	1.3	0.63	10.4	0.2	2.2	1	1	1	2	2	2	0	Glutathione-dependent	formaldehyde-activating	enzyme
DpnI	PF06044.12	gi|345007297|ref|YP_004810149.1|	-	0.043	13.5	0.3	0.053	13.2	0.3	1.2	1	0	0	1	1	1	0	Dam-replacing	family
DNA_ligase_ZBD	PF03119.16	gi|345007297|ref|YP_004810149.1|	-	0.28	11.2	4.3	0.74	9.9	0.4	2.4	2	0	0	2	2	2	0	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
Lar_restr_allev	PF14354.6	gi|345007298|ref|YP_004810150.1|	-	0.0077	16.6	1.0	0.019	15.3	0.7	1.7	2	0	0	2	2	2	1	Restriction	alleviation	protein	Lar
Cys_rich_KTR	PF14205.6	gi|345007298|ref|YP_004810150.1|	-	0.047	13.5	0.1	0.97	9.3	0.0	2.2	2	0	0	2	2	2	0	Cysteine-rich	KTR
OrfB_Zn_ribbon	PF07282.11	gi|345007298|ref|YP_004810150.1|	-	0.087	12.8	0.7	0.2	11.6	0.7	1.7	1	1	0	1	1	1	0	Putative	transposase	DNA-binding	domain
Zn_Tnp_IS1	PF03811.13	gi|345007298|ref|YP_004810150.1|	-	0.82	9.4	4.0	0.9	9.3	1.9	2.1	2	1	0	2	2	2	0	InsA	N-terminal	domain
DUF3797	PF12677.7	gi|345007298|ref|YP_004810150.1|	-	5.3	7.0	6.1	7.6	6.5	1.3	2.2	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF3797)
DDE_Tnp_1	PF01609.21	gi|345007302|ref|YP_004810154.1|	-	0.075	12.7	0.0	0.077	12.6	0.0	1.0	1	0	0	1	1	1	0	Transposase	DDE	domain
zf-ribbon_3	PF13248.6	gi|345007303|ref|YP_004810155.1|	-	0.0077	15.6	2.6	0.0077	15.6	2.6	3.2	4	0	0	4	4	4	1	zinc-ribbon	domain
HypA	PF01155.19	gi|345007303|ref|YP_004810155.1|	-	0.023	14.7	2.7	3.3	7.7	0.4	2.5	2	0	0	2	2	2	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
DZR	PF12773.7	gi|345007303|ref|YP_004810155.1|	-	0.091	12.8	9.4	0.59	10.2	0.3	3.5	3	1	0	3	3	3	0	Double	zinc	ribbon
zinc_ribbon_15	PF17032.5	gi|345007303|ref|YP_004810155.1|	-	0.15	12.8	7.5	3.9	8.3	0.1	3.5	3	2	1	4	4	4	0	zinc-ribbon	family
RNA_POL_M_15KD	PF02150.16	gi|345007303|ref|YP_004810155.1|	-	0.17	11.8	7.9	5.6	6.9	0.1	4.3	5	0	0	5	5	5	0	RNA	polymerases	M/15	Kd	subunit
zinc_ribbon_2	PF13240.6	gi|345007303|ref|YP_004810155.1|	-	5	7.0	14.4	2.2	8.1	2.6	3.9	4	0	0	4	4	4	0	zinc-ribbon	domain
zf_UBZ	PF18439.1	gi|345007303|ref|YP_004810155.1|	-	5.7	6.6	7.5	19	4.9	0.1	3.6	4	0	0	4	4	4	0	Ubiquitin-Binding	Zinc	Finger
TFIIB	PF00382.19	gi|345007304|ref|YP_004810156.1|	-	3e-30	104.1	0.6	1.6e-15	56.9	0.1	2.3	2	0	0	2	2	2	2	Transcription	factor	TFIIB	repeat
TF_Zn_Ribbon	PF08271.12	gi|345007304|ref|YP_004810156.1|	-	5.4e-13	48.2	3.1	1e-12	47.3	3.1	1.5	1	0	0	1	1	1	1	TFIIB	zinc-binding
RB_B	PF01857.20	gi|345007304|ref|YP_004810156.1|	-	0.016	15.3	0.0	0.032	14.3	0.0	1.4	1	0	0	1	1	1	0	Retinoblastoma-associated	protein	B	domain
Cyclin_C	PF02984.19	gi|345007304|ref|YP_004810156.1|	-	0.027	14.6	0.0	0.13	12.4	0.0	1.9	2	0	0	2	2	2	0	Cyclin,	C-terminal	domain
TackOD1	PF18551.1	gi|345007304|ref|YP_004810156.1|	-	0.037	13.7	0.6	0.066	12.9	0.6	1.3	1	0	0	1	1	1	0	Thaumarchaeal	output	domain	1
OrfB_Zn_ribbon	PF07282.11	gi|345007304|ref|YP_004810156.1|	-	0.062	13.2	1.0	0.17	11.8	1.0	1.7	1	0	0	1	1	1	0	Putative	transposase	DNA-binding	domain
DZR	PF12773.7	gi|345007304|ref|YP_004810156.1|	-	0.088	12.8	1.6	0.15	12.1	0.8	1.7	2	0	0	2	2	2	0	Double	zinc	ribbon
UPF0547	PF10571.9	gi|345007304|ref|YP_004810156.1|	-	0.12	12.5	1.5	0.25	11.4	1.5	1.5	1	0	0	1	1	1	0	Uncharacterised	protein	family	UPF0547
Zn-ribbon_8	PF09723.10	gi|345007304|ref|YP_004810156.1|	-	0.15	12.2	2.7	11	6.2	0.2	2.6	2	0	0	2	2	2	0	Zinc	ribbon	domain
DnaJ_CXXCXGXG	PF00684.19	gi|345007304|ref|YP_004810156.1|	-	0.27	11.6	3.4	0.27	11.6	1.4	2.0	2	0	0	2	2	2	0	DnaJ	central	domain
tRNA_anti-codon	PF01336.25	gi|345007305|ref|YP_004810157.1|	-	0.018	15.0	0.0	0.044	13.8	0.0	1.7	1	0	0	1	1	1	0	OB-fold	nucleic	acid	binding	domain
UPF0175	PF03683.13	gi|345007307|ref|YP_004810159.1|	-	2.4e-12	46.4	0.1	2.9e-12	46.1	0.1	1.1	1	0	0	1	1	1	1	Uncharacterised	protein	family	(UPF0175)
CtsR_C	PF17727.1	gi|345007308|ref|YP_004810160.1|	-	0.038	14.1	0.0	0.065	13.4	0.0	1.5	1	1	0	1	1	1	0	CtsR	C-terminal	dimerization	domain
ATG16	PF08614.11	gi|345007310|ref|YP_004810162.1|	-	0.00021	21.6	1.7	0.00021	21.6	1.7	2.0	2	0	0	2	2	2	1	Autophagy	protein	16	(ATG16)
DivIC	PF04977.15	gi|345007310|ref|YP_004810162.1|	-	0.0051	16.5	1.4	0.013	15.2	1.4	1.7	1	0	0	1	1	1	1	Septum	formation	initiator
SlyX	PF04102.12	gi|345007310|ref|YP_004810162.1|	-	0.011	16.3	2.2	0.011	16.3	2.2	2.6	3	0	0	3	3	3	0	SlyX
DUF1192	PF06698.11	gi|345007310|ref|YP_004810162.1|	-	0.024	14.7	1.6	0.084	12.9	1.6	2.0	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF1192)
DUF2205	PF10224.9	gi|345007310|ref|YP_004810162.1|	-	0.025	14.6	0.4	0.047	13.7	0.4	1.5	1	0	0	1	1	1	0	Short	coiled-coil	protein
HAP1_N	PF04849.13	gi|345007310|ref|YP_004810162.1|	-	0.025	13.8	4.6	0.043	13.0	4.6	1.2	1	0	0	1	1	1	0	HAP1	N-terminal	conserved	region
HSBP1	PF06825.12	gi|345007310|ref|YP_004810162.1|	-	0.046	13.6	2.0	5.2	7.0	0.5	2.6	1	1	1	2	2	2	0	Heat	shock	factor	binding	protein	1
DUF4407	PF14362.6	gi|345007310|ref|YP_004810162.1|	-	0.053	12.9	0.9	0.093	12.1	0.9	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4407)
Prefoldin	PF02996.17	gi|345007310|ref|YP_004810162.1|	-	0.073	13.0	2.6	0.069	13.1	0.9	1.8	2	0	0	2	2	2	0	Prefoldin	subunit
DUF1664	PF07889.12	gi|345007310|ref|YP_004810162.1|	-	0.11	12.5	0.7	0.2	11.7	0.7	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1664)
ZapB	PF06005.12	gi|345007310|ref|YP_004810162.1|	-	0.12	12.8	3.1	0.33	11.4	3.1	1.8	1	0	0	1	1	1	0	Cell	division	protein	ZapB
CASP_C	PF08172.12	gi|345007310|ref|YP_004810162.1|	-	0.14	11.5	3.0	0.25	10.7	3.0	1.4	1	0	0	1	1	1	0	CASP	C	terminal
TMF_DNA_bd	PF12329.8	gi|345007310|ref|YP_004810162.1|	-	0.17	11.9	4.3	0.33	11.0	4.3	1.5	1	0	0	1	1	1	0	TATA	element	modulatory	factor	1	DNA	binding
YabA	PF06156.13	gi|345007310|ref|YP_004810162.1|	-	0.18	12.4	0.9	0.47	11.1	0.9	1.6	1	0	0	1	1	1	0	Initiation	control	protein	YabA
CENP-Q	PF13094.6	gi|345007310|ref|YP_004810162.1|	-	0.19	12.0	5.4	0.49	10.6	5.4	1.6	1	0	0	1	1	1	0	CENP-Q,	a	CENPA-CAD	centromere	complex	subunit
FlaC_arch	PF05377.11	gi|345007310|ref|YP_004810162.1|	-	0.3	11.5	0.9	0.57	10.6	0.9	1.5	1	0	0	1	1	1	0	Flagella	accessory	protein	C	(FlaC)
UPF0242	PF06785.11	gi|345007310|ref|YP_004810162.1|	-	0.39	10.8	2.9	0.64	10.1	2.9	1.3	1	0	0	1	1	1	0	Uncharacterised	protein	family	(UPF0242)	N-terminus
XhlA	PF10779.9	gi|345007310|ref|YP_004810162.1|	-	0.48	10.7	2.1	1.1	9.5	2.1	1.6	1	0	0	1	1	1	0	Haemolysin	XhlA
Cep57_CLD_2	PF14197.6	gi|345007310|ref|YP_004810162.1|	-	0.55	10.4	7.4	1.4	9.1	7.4	1.6	1	0	0	1	1	1	0	Centrosome	localisation	domain	of	PPC89
DUF2203	PF09969.9	gi|345007310|ref|YP_004810162.1|	-	3.8	8.3	5.4	22	5.8	0.9	2.6	2	0	0	2	2	2	0	Uncharacterized	conserved	protein	(DUF2203)
DUF87	PF01935.17	gi|345007311|ref|YP_004810163.1|	-	0.0018	18.4	0.0	0.0064	16.6	0.0	2.0	2	0	0	2	2	2	1	Helicase	HerA,	central	domain
TrwB_AAD_bind	PF10412.9	gi|345007311|ref|YP_004810163.1|	-	0.0019	17.2	0.0	0.15	10.9	0.0	2.2	2	0	0	2	2	2	2	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
TraG-D_C	PF12696.7	gi|345007311|ref|YP_004810163.1|	-	0.018	15.0	0.0	0.073	13.1	0.0	2.0	2	0	0	2	2	2	0	TraM	recognition	site	of	TraD	and	TraG
AAA_10	PF12846.7	gi|345007312|ref|YP_004810164.1|	-	0.00049	19.1	0.4	0.2	10.5	0.1	2.2	2	0	0	2	2	2	2	AAA-like	domain
CagE_TrbE_VirB	PF03135.14	gi|345007312|ref|YP_004810164.1|	-	0.0005	20.2	0.0	0.00087	19.4	0.0	1.3	1	0	0	1	1	1	1	CagE,	TrbE,	VirB	family,	component	of	type	IV	transporter	system
AAA_22	PF13401.6	gi|345007312|ref|YP_004810164.1|	-	0.0013	19.0	1.8	0.14	12.5	0.2	3.4	3	1	1	4	4	4	1	AAA	domain
Zot	PF05707.12	gi|345007312|ref|YP_004810164.1|	-	0.005	16.5	0.4	0.032	13.9	0.1	2.1	2	0	0	2	2	2	1	Zonular	occludens	toxin	(Zot)
TraG-D_C	PF12696.7	gi|345007312|ref|YP_004810164.1|	-	0.013	15.5	0.0	0.031	14.3	0.0	1.6	1	0	0	1	1	1	0	TraM	recognition	site	of	TraD	and	TraG
LssY_C	PF14067.6	gi|345007314|ref|YP_004810166.1|	-	0.059	12.9	0.0	0.098	12.2	0.0	1.3	1	0	0	1	1	1	0	LssY	C-terminus
DUF4982	PF16355.5	gi|345007315|ref|YP_004810167.1|	-	0.0001	22.2	0.1	0.0004	20.3	0.1	2.0	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF4982)
TAT_signal	PF10518.9	gi|345007315|ref|YP_004810167.1|	-	0.14	12.0	0.1	0.26	11.2	0.1	1.5	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
Meth_synt_2	PF01717.18	gi|345007316|ref|YP_004810168.1|	-	0.073	12.3	0.1	0.12	11.7	0.1	1.2	1	0	0	1	1	1	0	Cobalamin-independent	synthase,	Catalytic	domain
TrbC	PF04956.13	gi|345007317|ref|YP_004810169.1|	-	0.092	13.0	2.4	0.13	12.4	1.1	1.8	2	0	0	2	2	2	0	TrbC/VIRB2	family
DUF3040	PF11239.8	gi|345007317|ref|YP_004810169.1|	-	0.64	10.3	4.3	8.8	6.7	0.0	2.5	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF3040)
XLF	PF09302.11	gi|345007318|ref|YP_004810170.1|	-	0.028	14.6	0.1	0.031	14.4	0.1	1.0	1	0	0	1	1	1	0	XLF-Cernunnos,	XRcc4-like	factor,	NHEJ	component
DUF5333	PF17267.2	gi|345007318|ref|YP_004810170.1|	-	0.035	14.3	0.1	0.038	14.2	0.1	1.3	1	0	0	1	1	1	0	Family	of	unknown	function	(DUF5333)
RHH_1	PF01402.21	gi|345007318|ref|YP_004810170.1|	-	0.068	13.1	1.6	0.23	11.4	0.2	2.1	2	0	0	2	2	2	0	Ribbon-helix-helix	protein,	copG	family
RNA_pol_Rpb2_5	PF04567.17	gi|345007319|ref|YP_004810171.1|	-	0.032	14.8	0.5	0.053	14.1	0.4	1.6	1	1	0	1	1	1	0	RNA	polymerase	Rpb2,	domain	5
PRiA4_ORF3	PF07929.11	gi|345007320|ref|YP_004810172.1|	-	2.6e-18	66.3	0.0	4e-18	65.7	0.0	1.1	1	0	0	1	1	1	1	Plasmid	pRiA4b	ORF-3-like	protein
DDE_Tnp_1	PF01609.21	gi|345007321|ref|YP_004810173.1|	-	2.8e-10	40.2	0.1	5.6e-10	39.2	0.1	1.5	1	0	0	1	1	1	1	Transposase	DDE	domain
PGA2	PF07543.12	gi|345007321|ref|YP_004810173.1|	-	0.05	13.6	0.5	0.088	12.8	0.1	1.6	2	0	0	2	2	2	0	Protein	trafficking	PGA2
DDE_Tnp_1_4	PF13701.6	gi|345007321|ref|YP_004810173.1|	-	0.11	10.7	0.5	0.43	8.8	0.5	1.9	1	1	0	1	1	1	0	Transposase	DDE	domain	group	1
DDE_Tnp_1	PF01609.21	gi|345007322|ref|YP_004810174.1|	-	0.027	14.1	0.1	0.14	11.8	0.0	2.1	1	1	0	1	1	1	0	Transposase	DDE	domain
UDPG_MGDP_dh_N	PF03721.14	gi|345007323|ref|YP_004810175.1|	-	1.1e-52	178.4	0.1	3.4e-52	176.7	0.0	1.8	2	0	0	2	2	2	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
UDPG_MGDP_dh	PF00984.19	gi|345007323|ref|YP_004810175.1|	-	9.7e-38	128.3	0.1	1.8e-37	127.4	0.1	1.5	1	0	0	1	1	1	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	central	domain
UDPG_MGDP_dh_C	PF03720.15	gi|345007323|ref|YP_004810175.1|	-	4.6e-28	97.7	0.1	1.6e-27	96.0	0.0	1.9	2	0	0	2	2	2	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	UDP	binding	domain
3HCDH_N	PF02737.18	gi|345007323|ref|YP_004810175.1|	-	0.00017	21.5	0.0	0.00045	20.2	0.0	1.8	1	0	0	1	1	1	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
NAD_Gly3P_dh_N	PF01210.23	gi|345007323|ref|YP_004810175.1|	-	0.0007	19.6	0.0	0.0019	18.2	0.0	1.7	1	0	0	1	1	1	1	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
ApbA	PF02558.16	gi|345007323|ref|YP_004810175.1|	-	0.0044	16.7	0.0	0.017	14.8	0.0	2.0	2	1	0	2	2	2	1	Ketopantoate	reductase	PanE/ApbA
Pyr_redox	PF00070.27	gi|345007323|ref|YP_004810175.1|	-	0.0064	17.0	0.3	0.028	15.0	0.1	2.2	2	0	0	2	2	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
2-Hacid_dh_C	PF02826.19	gi|345007323|ref|YP_004810175.1|	-	0.013	14.9	0.0	0.31	10.4	0.0	2.3	2	0	0	2	2	2	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
Pyr_redox_2	PF07992.14	gi|345007323|ref|YP_004810175.1|	-	0.013	14.7	0.1	0.026	13.8	0.1	1.4	1	0	0	1	1	1	0	Pyridine	nucleotide-disulphide	oxidoreductase
F420_oxidored	PF03807.17	gi|345007323|ref|YP_004810175.1|	-	0.024	15.2	0.1	3.1	8.4	0.0	3.7	3	1	0	3	3	3	0	NADP	oxidoreductase	coenzyme	F420-dependent
NAD_binding_11	PF14833.6	gi|345007323|ref|YP_004810175.1|	-	0.024	14.9	0.5	0.2	11.9	0.5	2.3	1	1	0	1	1	1	0	NAD-binding	of	NADP-dependent	3-hydroxyisobutyrate	dehydrogenase
TrkA_N	PF02254.18	gi|345007323|ref|YP_004810175.1|	-	0.032	14.5	0.7	0.69	10.2	0.0	3.0	3	0	0	3	3	3	0	TrkA-N	domain
Rossmann-like	PF10727.9	gi|345007323|ref|YP_004810175.1|	-	0.072	13.0	0.4	0.29	11.0	0.2	2.2	2	0	0	2	2	2	0	Rossmann-like	domain
NAD_binding_2	PF03446.15	gi|345007323|ref|YP_004810175.1|	-	0.074	13.2	0.1	0.35	11.0	0.0	2.1	2	0	0	2	2	2	0	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
AlaDh_PNT_C	PF01262.21	gi|345007323|ref|YP_004810175.1|	-	0.17	11.2	2.5	0.17	11.2	0.2	2.0	2	1	0	2	2	2	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
HTH_20	PF12840.7	gi|345007324|ref|YP_004810176.1|	-	1.9e-05	24.6	0.0	2.2e-05	24.4	0.0	1.1	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_45	PF14947.6	gi|345007324|ref|YP_004810176.1|	-	0.0012	18.8	0.0	0.0015	18.4	0.0	1.1	1	0	0	1	1	1	1	Winged	helix-turn-helix
DprA_WH	PF17782.1	gi|345007324|ref|YP_004810176.1|	-	0.0046	17.0	0.1	0.0065	16.6	0.1	1.3	1	0	0	1	1	1	1	DprA	winged	helix	domain
HTH_Crp_2	PF13545.6	gi|345007324|ref|YP_004810176.1|	-	0.0064	16.4	0.0	0.0097	15.9	0.0	1.5	1	1	1	2	2	2	1	Crp-like	helix-turn-helix	domain
HTH_36	PF13730.6	gi|345007324|ref|YP_004810176.1|	-	0.0065	16.4	0.0	0.012	15.5	0.0	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_27	PF13463.6	gi|345007324|ref|YP_004810176.1|	-	0.0069	16.9	0.0	0.01	16.3	0.0	1.3	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
Replic_Relax	PF13814.6	gi|345007324|ref|YP_004810176.1|	-	0.0094	16.0	0.0	0.01	15.9	0.0	1.1	1	0	0	1	1	1	1	Replication-relaxation
HTH_IclR	PF09339.10	gi|345007324|ref|YP_004810176.1|	-	0.023	14.5	0.0	0.032	14.0	0.0	1.2	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
MarR_2	PF12802.7	gi|345007324|ref|YP_004810176.1|	-	0.031	14.2	0.0	0.042	13.7	0.0	1.1	1	0	0	1	1	1	0	MarR	family
HTH_29	PF13551.6	gi|345007324|ref|YP_004810176.1|	-	0.035	14.1	0.0	0.059	13.4	0.0	1.5	1	1	0	1	1	1	0	Winged	helix-turn	helix
TrmB	PF01978.19	gi|345007324|ref|YP_004810176.1|	-	0.045	13.6	0.0	0.061	13.2	0.0	1.4	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
HTH_5	PF01022.20	gi|345007324|ref|YP_004810176.1|	-	0.058	13.3	0.0	0.085	12.7	0.0	1.1	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
MarR	PF01047.22	gi|345007324|ref|YP_004810176.1|	-	0.093	12.7	0.0	0.14	12.1	0.0	1.3	1	0	0	1	1	1	0	MarR	family
Trp_repressor	PF01371.19	gi|345007324|ref|YP_004810176.1|	-	0.14	12.3	0.0	0.19	11.9	0.0	1.2	1	0	0	1	1	1	0	Trp	repressor	protein
DUF2059	PF09832.9	gi|345007325|ref|YP_004810177.1|	-	0.11	12.6	0.0	0.13	12.4	0.0	1.2	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2059)
DUF1328	PF07043.13	gi|345007326|ref|YP_004810178.1|	-	4.5e-11	42.8	15.3	6.9e-11	42.2	15.3	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1328)
zf-ribbon_3	PF13248.6	gi|345007327|ref|YP_004810179.1|	-	0.00064	19.0	1.3	0.087	12.3	0.2	2.2	2	0	0	2	2	2	2	zinc-ribbon	domain
zinc_ribbon_4	PF13717.6	gi|345007327|ref|YP_004810179.1|	-	0.0016	18.3	0.9	0.29	11.1	0.1	2.1	2	0	0	2	2	2	2	zinc-ribbon	domain
DZR	PF12773.7	gi|345007327|ref|YP_004810179.1|	-	0.0019	18.1	0.9	0.003	17.5	0.9	1.3	1	1	0	1	1	1	1	Double	zinc	ribbon
zinc_ribbon_2	PF13240.6	gi|345007327|ref|YP_004810179.1|	-	0.0068	16.1	1.0	0.071	12.8	0.2	2.1	2	0	0	2	2	2	1	zinc-ribbon	domain
zf-LITAF-like	PF10601.9	gi|345007327|ref|YP_004810179.1|	-	0.016	15.4	2.1	1.8	8.9	0.2	2.1	1	1	1	2	2	2	0	LITAF-like	zinc	ribbon	domain
CpXC	PF14353.6	gi|345007327|ref|YP_004810179.1|	-	0.028	14.5	0.3	0.035	14.1	0.3	1.2	1	0	0	1	1	1	0	CpXC	protein
TF_Zn_Ribbon	PF08271.12	gi|345007327|ref|YP_004810179.1|	-	0.04	13.4	1.8	4.2	7.0	0.4	2.1	2	0	0	2	2	2	0	TFIIB	zinc-binding
Zn-ribbon_8	PF09723.10	gi|345007327|ref|YP_004810179.1|	-	0.052	13.7	0.6	2.9	8.1	0.1	2.1	2	0	0	2	2	2	0	Zinc	ribbon	domain
zf-C4_Topoisom	PF01396.19	gi|345007327|ref|YP_004810179.1|	-	0.07	12.9	2.0	1.2	9.0	0.1	2.1	2	0	0	2	2	2	0	Topoisomerase	DNA	binding	C4	zinc	finger
zf-RING_7	PF02591.15	gi|345007327|ref|YP_004810179.1|	-	0.084	13.1	3.4	2.1	8.6	0.1	2.2	2	0	0	2	2	2	0	C4-type	zinc	ribbon	domain
Yippee-Mis18	PF03226.14	gi|345007327|ref|YP_004810179.1|	-	0.12	12.6	1.1	4.4	7.6	0.2	2.0	1	1	1	2	2	2	0	Yippee	zinc-binding/DNA-binding	/Mis18,	centromere	assembly
zf-ACC	PF17848.1	gi|345007327|ref|YP_004810179.1|	-	0.14	12.2	3.4	5	7.3	0.1	2.2	2	0	0	2	2	2	0	Acetyl-coA	carboxylase	zinc	finger	domain
Zn_Tnp_IS1595	PF12760.7	gi|345007327|ref|YP_004810179.1|	-	0.45	10.5	3.3	8.8	6.4	3.7	2.0	1	1	1	2	2	2	0	Transposase	zinc-ribbon	domain
Eapp_C	PF10238.9	gi|345007327|ref|YP_004810179.1|	-	0.53	10.3	2.6	2.5	8.1	0.2	2.0	1	1	1	2	2	2	0	E2F-associated	phosphoprotein
zinc_ribbon_5	PF13719.6	gi|345007327|ref|YP_004810179.1|	-	0.94	9.3	3.2	4.1	7.2	0.2	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
DUF1059	PF06348.11	gi|345007329|ref|YP_004810181.1|	-	3.4e-12	46.4	2.0	4.1e-12	46.1	2.0	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1059)
MEA1	PF06910.11	gi|345007329|ref|YP_004810181.1|	-	0.018	15.6	0.4	0.018	15.6	0.4	1.0	1	0	0	1	1	1	0	Male	enhanced	antigen	1	(MEA1)
OrfB_IS605	PF01385.19	gi|345007331|ref|YP_004810183.1|	-	7.6e-30	103.6	0.5	7.6e-30	103.6	0.5	1.6	2	0	0	2	2	2	1	Probable	transposase
OrfB_Zn_ribbon	PF07282.11	gi|345007331|ref|YP_004810183.1|	-	5.4e-19	67.9	0.7	1.1e-18	66.9	0.2	1.8	2	0	0	2	2	2	1	Putative	transposase	DNA-binding	domain
Prim_Zn_Ribbon	PF08273.12	gi|345007331|ref|YP_004810183.1|	-	0.38	11.1	2.5	1.1	9.6	2.5	1.8	1	0	0	1	1	1	0	Zinc-binding	domain	of	primase-helicase
Ferritin_2	PF13668.6	gi|345007333|ref|YP_004810185.1|	-	1.2e-38	132.4	0.8	1.2e-38	132.4	0.8	1.4	2	0	0	2	2	2	1	Ferritin-like	domain
TrmB	PF01978.19	gi|345007334|ref|YP_004810186.1|	-	2.4e-16	59.4	0.0	3.5e-16	58.8	0.0	1.3	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_42	PF06224.12	gi|345007334|ref|YP_004810186.1|	-	0.018	14.6	0.1	0.024	14.2	0.1	1.2	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
Cdc6_C	PF09079.11	gi|345007334|ref|YP_004810186.1|	-	0.049	13.6	0.0	0.08	12.9	0.0	1.5	1	0	0	1	1	1	0	CDC6,	C	terminal	winged	helix	domain
DUF2250	PF10007.9	gi|345007334|ref|YP_004810186.1|	-	0.056	13.6	0.0	0.15	12.2	0.0	1.7	1	1	1	2	2	2	0	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
HalOD1	PF18545.1	gi|345007335|ref|YP_004810187.1|	-	4.1e-23	81.4	2.8	5.7e-23	81.0	2.8	1.2	1	0	0	1	1	1	1	Halobacterial	output	domain	1
Ribosomal_S27e	PF01667.17	gi|345007335|ref|YP_004810187.1|	-	0.17	11.6	0.1	0.24	11.1	0.1	1.2	1	0	0	1	1	1	0	Ribosomal	protein	S27
Phage_integrase	PF00589.22	gi|345007336|ref|YP_004810188.1|	-	4.4e-05	23.3	0.0	0.00016	21.6	0.0	2.0	1	1	0	1	1	1	1	Phage	integrase	family
Phage_int_SAM_5	PF13102.6	gi|345007336|ref|YP_004810188.1|	-	0.001	19.4	0.0	0.0021	18.4	0.0	1.5	1	0	0	1	1	1	1	Phage	integrase	SAM-like	domain
PRiA4_ORF3	PF07929.11	gi|345007337|ref|YP_004810189.1|	-	7e-15	55.2	0.1	8.3e-15	54.9	0.1	1.1	1	0	0	1	1	1	1	Plasmid	pRiA4b	ORF-3-like	protein
DUF3368	PF11848.8	gi|345007338|ref|YP_004810190.1|	-	0.03	14.1	0.0	0.067	13.0	0.0	1.6	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3368)
UPF0175	PF03683.13	gi|345007339|ref|YP_004810191.1|	-	7.5e-17	60.8	1.1	1e-16	60.3	1.1	1.3	1	0	0	1	1	1	1	Uncharacterised	protein	family	(UPF0175)
DUF1847	PF08901.11	gi|345007339|ref|YP_004810191.1|	-	0.14	11.8	0.0	0.16	11.6	0.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1847)
E1-E2_ATPase	PF00122.20	gi|345007340|ref|YP_004810192.1|	-	4.2e-49	166.5	1.6	1.2e-48	165.0	1.6	1.8	1	0	0	1	1	1	1	E1-E2	ATPase
Hydrolase	PF00702.26	gi|345007340|ref|YP_004810192.1|	-	1.1e-47	163.0	7.3	2.8e-47	161.7	7.3	1.6	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
HMA	PF00403.26	gi|345007340|ref|YP_004810192.1|	-	1.7e-26	92.5	0.0	3.4e-13	49.8	0.0	2.8	2	0	0	2	2	2	2	Heavy-metal-associated	domain
Hydrolase_3	PF08282.12	gi|345007340|ref|YP_004810192.1|	-	7.2e-06	25.9	1.6	0.029	14.1	0.7	2.6	2	0	0	2	2	2	2	haloacid	dehalogenase-like	hydrolase
Hydrolase_6	PF13344.6	gi|345007340|ref|YP_004810192.1|	-	0.00029	20.9	0.7	0.0037	17.4	0.0	3.2	4	0	0	4	4	4	1	Haloacid	dehalogenase-like	hydrolase
HAD	PF12710.7	gi|345007340|ref|YP_004810192.1|	-	0.00091	19.7	0.0	0.003	18.0	0.0	1.9	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
HTH_24	PF13412.6	gi|345007340|ref|YP_004810192.1|	-	0.032	13.8	0.1	3.2	7.4	0.0	2.6	2	0	0	2	2	2	0	Winged	helix-turn-helix	DNA-binding
Sgf11	PF08209.11	gi|345007340|ref|YP_004810192.1|	-	0.18	11.4	1.0	7.3	6.2	0.1	2.3	2	0	0	2	2	2	0	Sgf11	(transcriptional	regulation	protein)
HTH_AsnC-type	PF13404.6	gi|345007341|ref|YP_004810193.1|	-	7.9e-15	54.4	0.6	1.5e-14	53.5	0.6	1.5	1	0	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
HTH_24	PF13412.6	gi|345007341|ref|YP_004810193.1|	-	1.1e-14	53.7	0.0	1.6e-14	53.2	0.0	1.3	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_5	PF01022.20	gi|345007341|ref|YP_004810193.1|	-	1.3e-05	24.9	0.1	2.7e-05	24.0	0.0	1.6	2	0	0	2	2	2	1	Bacterial	regulatory	protein,	arsR	family
MarR_2	PF12802.7	gi|345007341|ref|YP_004810193.1|	-	7.3e-05	22.6	0.1	0.00017	21.4	0.1	1.6	1	0	0	1	1	1	1	MarR	family
MarR	PF01047.22	gi|345007341|ref|YP_004810193.1|	-	0.00011	22.1	0.0	0.00018	21.3	0.0	1.4	1	0	0	1	1	1	1	MarR	family
HTH_20	PF12840.7	gi|345007341|ref|YP_004810193.1|	-	0.00011	22.2	0.0	0.00032	20.7	0.0	1.7	1	0	0	1	1	1	1	Helix-turn-helix	domain
Arc_trans_TRASH	PF08394.10	gi|345007341|ref|YP_004810193.1|	-	0.00025	21.3	0.6	0.00037	20.7	0.6	1.3	1	0	0	1	1	1	1	Archaeal	TRASH	domain
TrmB	PF01978.19	gi|345007341|ref|YP_004810193.1|	-	0.0051	16.7	0.0	0.013	15.4	0.0	1.6	2	0	0	2	2	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_IclR	PF09339.10	gi|345007341|ref|YP_004810193.1|	-	0.0057	16.4	0.3	0.022	14.6	0.0	1.9	2	0	0	2	2	2	1	IclR	helix-turn-helix	domain
HTH_Crp_2	PF13545.6	gi|345007341|ref|YP_004810193.1|	-	0.0092	15.9	0.1	0.021	14.8	0.1	1.6	1	0	0	1	1	1	1	Crp-like	helix-turn-helix	domain
HTH_23	PF13384.6	gi|345007341|ref|YP_004810193.1|	-	0.022	14.5	0.0	0.046	13.5	0.0	1.5	1	0	0	1	1	1	0	Homeodomain-like	domain
YHS	PF04945.13	gi|345007341|ref|YP_004810193.1|	-	0.024	14.7	0.3	0.044	13.9	0.3	1.4	1	0	0	1	1	1	0	YHS	domain
HTH_28	PF13518.6	gi|345007341|ref|YP_004810193.1|	-	0.079	13.1	0.0	0.18	11.9	0.0	1.6	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_11	PF08279.12	gi|345007341|ref|YP_004810193.1|	-	0.1	12.6	0.0	0.19	11.7	0.0	1.4	1	0	0	1	1	1	0	HTH	domain
FaeA	PF04703.12	gi|345007341|ref|YP_004810193.1|	-	0.14	12.5	0.0	0.73	10.3	0.0	2.0	1	1	0	1	1	1	0	FaeA-like	protein
AceK	PF06315.11	gi|345007341|ref|YP_004810193.1|	-	0.16	10.4	0.0	0.2	10.1	0.0	1.1	1	0	0	1	1	1	0	Isocitrate	dehydrogenase	kinase/phosphatase	(AceK)
HECT_2	PF09814.9	gi|345007341|ref|YP_004810193.1|	-	0.26	10.1	0.5	11	4.7	0.0	2.0	1	1	1	2	2	2	0	HECT-like	Ubiquitin-conjugating	enzyme	(E2)-binding
ATPase-cat_bd	PF12156.8	gi|345007341|ref|YP_004810193.1|	-	0.3	11.8	5.1	0.23	12.2	3.6	1.5	2	0	0	2	2	1	0	Putative	metal-binding	domain	of	cation	transport	ATPase
Zn-ribbon_8	PF09723.10	gi|345007341|ref|YP_004810193.1|	-	0.35	11.0	2.6	5	7.3	0.8	2.3	2	0	0	2	2	2	0	Zinc	ribbon	domain
GD_AH_C	PF04295.13	gi|345007342|ref|YP_004810194.1|	-	0.081	11.7	0.0	0.1	11.4	0.0	1.1	1	0	0	1	1	1	0	D-galactarate	dehydratase	/	Altronate	hydrolase,	C	terminus
TraF	PF13728.6	gi|345007342|ref|YP_004810194.1|	-	0.2	11.5	2.7	0.25	11.1	2.7	1.1	1	0	0	1	1	1	0	F	plasmid	transfer	operon	protein
AAA_31	PF13614.6	gi|345007343|ref|YP_004810195.1|	-	2.5e-28	99.2	0.0	3.2e-28	98.8	0.0	1.1	1	0	0	1	1	1	1	AAA	domain
CBP_BcsQ	PF06564.12	gi|345007343|ref|YP_004810195.1|	-	1.7e-09	37.5	0.0	2.9e-08	33.5	0.0	2.0	2	0	0	2	2	2	1	Cellulose	biosynthesis	protein	BcsQ
CbiA	PF01656.23	gi|345007343|ref|YP_004810195.1|	-	2e-07	31.1	0.0	2.8e-07	30.7	0.0	1.2	1	0	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
MipZ	PF09140.11	gi|345007343|ref|YP_004810195.1|	-	1.5e-06	27.7	0.1	5.4e-06	25.9	0.1	1.8	1	1	0	1	1	1	1	ATPase	MipZ
ParA	PF10609.9	gi|345007343|ref|YP_004810195.1|	-	3e-05	23.6	0.0	6.3e-05	22.5	0.0	1.4	1	1	0	1	1	1	1	NUBPL	iron-transfer	P-loop	NTPase
ArsA_ATPase	PF02374.15	gi|345007343|ref|YP_004810195.1|	-	0.0014	17.9	0.1	0.0032	16.7	0.1	1.6	1	1	0	1	1	1	1	Anion-transporting	ATPase
Fer4_NifH	PF00142.18	gi|345007343|ref|YP_004810195.1|	-	0.029	13.8	0.0	0.44	10.0	0.0	2.3	2	0	0	2	2	2	0	4Fe-4S	iron	sulfur	cluster	binding	proteins,	NifH/frxC	family
VirC1	PF07015.11	gi|345007343|ref|YP_004810195.1|	-	0.14	11.4	0.0	0.56	9.5	0.0	1.9	2	1	0	2	2	2	0	VirC1	protein
Glyoxalase_3	PF13468.6	gi|345007344|ref|YP_004810196.1|	-	8e-18	65.2	0.2	2.4e-17	63.6	0.1	1.8	2	0	0	2	2	2	1	Glyoxalase-like	domain
Glyoxalase_4	PF13669.6	gi|345007344|ref|YP_004810196.1|	-	1.9e-07	31.3	0.0	3.7e-07	30.4	0.0	1.4	1	0	0	1	1	1	1	Glyoxalase/Bleomycin	resistance	protein/Dioxygenase	superfamily
Glycos_transf_2	PF00535.26	gi|345007345|ref|YP_004810197.1|	-	2.6e-07	30.6	0.0	5.3e-07	29.6	0.0	1.5	1	1	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_tranf_2_2	PF10111.9	gi|345007345|ref|YP_004810197.1|	-	6.3e-05	22.6	0.0	0.23	10.9	0.0	2.1	2	0	0	2	2	2	2	Glycosyltransferase	like	family	2
Glyco_transf_7C	PF02709.14	gi|345007345|ref|YP_004810197.1|	-	0.00036	20.1	0.3	0.00061	19.4	0.3	1.3	1	0	0	1	1	1	1	N-terminal	domain	of	galactosyltransferase
Glyco_transf_21	PF13506.6	gi|345007345|ref|YP_004810197.1|	-	0.00049	19.6	0.0	0.00095	18.7	0.0	1.5	1	1	0	1	1	1	1	Glycosyl	transferase	family	21
Glyco_trans_2_3	PF13632.6	gi|345007345|ref|YP_004810197.1|	-	0.0076	16.2	0.1	0.015	15.2	0.1	1.5	1	0	0	1	1	1	1	Glycosyl	transferase	family	group	2
DDE_Tnp_IS66	PF03050.14	gi|345007346|ref|YP_004810198.1|	-	4.4e-49	167.5	0.2	4.4e-49	167.5	0.2	1.9	2	0	0	2	2	2	1	Transposase	IS66	family
SlyX	PF04102.12	gi|345007346|ref|YP_004810198.1|	-	0.00015	22.3	5.5	0.00052	20.6	5.5	1.9	1	0	0	1	1	1	1	SlyX
MscS_porin	PF12795.7	gi|345007346|ref|YP_004810198.1|	-	0.0008	19.0	5.1	0.0008	19.0	5.1	1.8	2	0	0	2	2	2	1	Mechanosensitive	ion	channel	porin	domain
UPF0242	PF06785.11	gi|345007346|ref|YP_004810198.1|	-	0.0026	17.9	11.2	0.0048	17.0	11.2	1.4	1	0	0	1	1	1	1	Uncharacterised	protein	family	(UPF0242)	N-terminus
DUF16	PF01519.16	gi|345007346|ref|YP_004810198.1|	-	0.0029	18.1	5.6	0.0061	17.0	5.6	1.4	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF16
zf-IS66	PF13005.7	gi|345007346|ref|YP_004810198.1|	-	0.0036	17.7	3.7	0.0036	17.7	3.7	2.6	3	0	0	3	3	1	1	zinc-finger	binding	domain	of	transposase	IS66
HemX	PF04375.14	gi|345007346|ref|YP_004810198.1|	-	0.0046	16.3	2.5	0.0074	15.6	2.5	1.2	1	0	0	1	1	1	1	HemX,	putative	uroporphyrinogen-III	C-methyltransferase
Atg14	PF10186.9	gi|345007346|ref|YP_004810198.1|	-	0.006	15.7	4.1	0.01	15.0	4.1	1.3	1	0	0	1	1	1	1	Vacuolar	sorting	38	and	autophagy-related	subunit	14
SKA1	PF07160.12	gi|345007346|ref|YP_004810198.1|	-	0.0097	15.8	0.7	0.017	15.0	0.7	1.3	1	0	0	1	1	1	1	Spindle	and	kinetochore-associated	protein	1
YkyA	PF10368.9	gi|345007346|ref|YP_004810198.1|	-	0.021	14.5	6.4	0.037	13.7	6.4	1.2	1	0	0	1	1	1	0	Putative	cell-wall	binding	lipoprotein
ATG16	PF08614.11	gi|345007346|ref|YP_004810198.1|	-	0.027	14.7	7.0	0.027	14.7	7.0	2.1	3	0	0	3	3	1	0	Autophagy	protein	16	(ATG16)
HOOK	PF05622.12	gi|345007346|ref|YP_004810198.1|	-	0.03	12.5	6.0	0.044	11.9	6.0	1.1	1	0	0	1	1	1	0	HOOK	protein
DDE_Tnp_IS240	PF13610.6	gi|345007346|ref|YP_004810198.1|	-	0.037	14.3	3.3	0.43	10.8	0.0	2.6	2	1	0	2	2	2	0	DDE	domain
AAA_23	PF13476.6	gi|345007346|ref|YP_004810198.1|	-	0.037	14.5	4.7	0.08	13.4	4.7	1.5	1	0	0	1	1	1	0	AAA	domain
Noelin-1	PF12308.8	gi|345007346|ref|YP_004810198.1|	-	0.042	13.8	2.0	0.085	12.9	0.9	1.9	2	0	0	2	2	2	0	Neurogenesis	glycoprotein
Phage_Mu_Gam	PF07352.12	gi|345007346|ref|YP_004810198.1|	-	0.048	13.6	4.8	0.087	12.7	4.8	1.4	1	0	0	1	1	1	0	Bacteriophage	Mu	Gam	like	protein
DUF3584	PF12128.8	gi|345007346|ref|YP_004810198.1|	-	0.059	10.9	6.5	0.088	10.3	6.5	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3584)
XhlA	PF10779.9	gi|345007346|ref|YP_004810198.1|	-	0.062	13.5	8.4	0.15	12.3	8.4	1.7	1	0	0	1	1	1	0	Haemolysin	XhlA
TMPIT	PF07851.13	gi|345007346|ref|YP_004810198.1|	-	0.077	12.2	3.2	0.12	11.6	3.2	1.2	1	0	0	1	1	1	0	TMPIT-like	protein
Phage_HK97_TLTM	PF06120.11	gi|345007346|ref|YP_004810198.1|	-	0.094	11.9	1.1	0.15	11.3	1.1	1.2	1	0	0	1	1	1	0	Tail	length	tape	measure	protein
Exonuc_VII_L	PF02601.15	gi|345007346|ref|YP_004810198.1|	-	0.1	12.1	1.3	0.24	10.9	1.3	1.5	1	0	0	1	1	1	0	Exonuclease	VII,	large	subunit
Fmp27_WPPW	PF10359.9	gi|345007346|ref|YP_004810198.1|	-	0.11	11.3	2.2	0.17	10.7	2.2	1.2	1	0	0	1	1	1	0	RNA	pol	II	promoter	Fmp27	protein	domain
DUF1664	PF07889.12	gi|345007346|ref|YP_004810198.1|	-	0.11	12.5	2.0	0.21	11.7	2.0	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1664)
FPP	PF05911.11	gi|345007346|ref|YP_004810198.1|	-	0.11	10.6	5.4	0.15	10.2	5.4	1.1	1	0	0	1	1	1	0	Filament-like	plant	protein,	long	coiled-coil
HSBP1	PF06825.12	gi|345007346|ref|YP_004810198.1|	-	0.18	11.7	5.5	0.45	10.4	1.1	2.4	1	1	0	2	2	2	0	Heat	shock	factor	binding	protein	1
DUF4446	PF14584.6	gi|345007346|ref|YP_004810198.1|	-	0.19	11.7	2.9	0.34	10.9	2.9	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF4446)
BST2	PF16716.5	gi|345007346|ref|YP_004810198.1|	-	0.26	11.9	6.2	0.68	10.5	6.2	1.7	1	0	0	1	1	1	0	Bone	marrow	stromal	antigen	2
FlaC_arch	PF05377.11	gi|345007346|ref|YP_004810198.1|	-	0.31	11.5	7.4	0.72	10.3	7.4	1.6	1	0	0	1	1	1	0	Flagella	accessory	protein	C	(FlaC)
FliS	PF02561.14	gi|345007346|ref|YP_004810198.1|	-	0.37	11.1	3.1	3.2	8.0	0.6	2.4	2	0	0	2	2	2	0	Flagellar	protein	FliS
AAA_13	PF13166.6	gi|345007346|ref|YP_004810198.1|	-	0.84	8.2	4.7	1.2	7.6	4.7	1.1	1	0	0	1	1	1	0	AAA	domain
ATP-synt_E	PF05680.12	gi|345007346|ref|YP_004810198.1|	-	0.87	10.0	4.7	2.7	8.4	4.7	1.9	1	0	0	1	1	1	0	ATP	synthase	E	chain
Fzo_mitofusin	PF04799.13	gi|345007346|ref|YP_004810198.1|	-	0.88	9.1	3.3	1.6	8.2	3.3	1.3	1	0	0	1	1	1	0	fzo-like	conserved	region
Synaptobrevin	PF00957.21	gi|345007346|ref|YP_004810198.1|	-	1.9	8.3	3.4	3.9	7.3	3.4	1.4	1	0	0	1	1	1	0	Synaptobrevin
PKcGMP_CC	PF16808.5	gi|345007346|ref|YP_004810198.1|	-	2	8.3	20.5	2.9	7.8	13.4	2.9	1	1	1	2	2	2	0	Coiled-coil	N-terminus	of	cGMP-dependent	protein	kinase
UPF0449	PF15136.6	gi|345007346|ref|YP_004810198.1|	-	2.9	8.4	10.9	14	6.3	5.1	2.8	2	0	0	2	2	2	0	Uncharacterised	protein	family	UPF0449
Spc7	PF08317.11	gi|345007346|ref|YP_004810198.1|	-	3.7	6.3	14.0	0.086	11.7	6.7	1.8	2	0	0	2	2	2	0	Spc7	kinetochore	protein
TMF_DNA_bd	PF12329.8	gi|345007346|ref|YP_004810198.1|	-	5.3	7.1	15.6	0.74	9.8	11.5	1.7	2	0	0	2	2	1	0	TATA	element	modulatory	factor	1	DNA	binding
FemAB	PF02388.16	gi|345007346|ref|YP_004810198.1|	-	5.4	5.8	6.3	8.1	5.2	6.3	1.1	1	0	0	1	1	1	0	FemAB	family
DUF3552	PF12072.8	gi|345007346|ref|YP_004810198.1|	-	5.5	6.4	21.2	0.04	13.3	11.5	2.0	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF3552)
DUF5446	PF17522.2	gi|345007346|ref|YP_004810198.1|	-	6.6	7.0	12.0	23	5.3	12.0	1.9	1	0	0	1	1	1	0	Family	of	unknown	function	(DUF5446)
Med9	PF07544.13	gi|345007346|ref|YP_004810198.1|	-	6.6	6.9	12.5	45	4.2	12.5	2.3	1	1	0	1	1	1	0	RNA	polymerase	II	transcription	mediator	complex	subunit	9
Sulfatase	PF00884.23	gi|345007347|ref|YP_004810199.1|	-	0.0004	19.9	1.0	0.00048	19.6	1.0	1.2	1	0	0	1	1	1	1	Sulfatase
PglZ	PF08665.12	gi|345007347|ref|YP_004810199.1|	-	0.019	15.0	0.8	0.12	12.4	0.0	2.4	2	1	0	2	2	2	0	PglZ	domain
CARDB	PF07705.11	gi|345007348|ref|YP_004810200.1|	-	2.6e-06	27.6	4.9	3e-06	27.4	1.5	2.6	2	0	0	2	2	2	1	CARDB
HIG_1_N	PF04588.13	gi|345007349|ref|YP_004810201.1|	-	0.07	13.4	2.8	1.9	8.8	0.5	3.4	3	0	0	3	3	3	0	Hypoxia	induced	protein	conserved	region
Glycos_transf_1	PF00534.20	gi|345007350|ref|YP_004810202.1|	-	2e-30	105.6	0.0	3.1e-30	105.0	0.0	1.2	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.6	gi|345007350|ref|YP_004810202.1|	-	1.4e-24	87.1	0.0	2.2e-24	86.4	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_transf_4	PF13439.6	gi|345007350|ref|YP_004810202.1|	-	5.7e-17	62.2	0.0	1.1e-16	61.3	0.0	1.4	1	0	0	1	1	1	1	Glycosyltransferase	Family	4
Glyco_trans_4_4	PF13579.6	gi|345007350|ref|YP_004810202.1|	-	8.2e-12	45.9	0.0	9.7e-11	42.4	0.0	2.3	2	0	0	2	2	2	1	Glycosyl	transferase	4-like	domain
Glyco_trans_4_2	PF13477.6	gi|345007350|ref|YP_004810202.1|	-	4.2e-06	26.9	0.0	6.7e-06	26.2	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	transferase	4-like
Glyco_trans_1_2	PF13524.6	gi|345007350|ref|YP_004810202.1|	-	0.0023	18.3	0.0	0.013	15.9	0.0	2.1	2	0	0	2	2	2	1	Glycosyl	transferases	group	1
DUF4736	PF15883.5	gi|345007350|ref|YP_004810202.1|	-	0.0095	15.7	0.3	0.13	12.0	0.1	2.2	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF4736)
Glycos_transf_2	PF00535.26	gi|345007351|ref|YP_004810203.1|	-	4.5e-29	101.4	0.1	7.1e-29	100.8	0.1	1.3	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_tranf_2_3	PF13641.6	gi|345007351|ref|YP_004810203.1|	-	1.2e-23	84.2	0.0	1.9e-23	83.5	0.0	1.2	1	0	0	1	1	1	1	Glycosyltransferase	like	family	2
Glyco_transf_21	PF13506.6	gi|345007351|ref|YP_004810203.1|	-	2.1e-09	37.1	0.0	3.4e-09	36.4	0.0	1.2	1	0	0	1	1	1	1	Glycosyl	transferase	family	21
Glyco_tranf_2_2	PF10111.9	gi|345007351|ref|YP_004810203.1|	-	6.8e-09	35.6	0.1	0.00032	20.3	0.1	2.1	2	0	0	2	2	2	2	Glycosyltransferase	like	family	2
Glyco_trans_2_3	PF13632.6	gi|345007351|ref|YP_004810203.1|	-	3.3e-08	33.7	1.2	5.8e-08	32.9	1.2	1.3	1	0	0	1	1	1	1	Glycosyl	transferase	family	group	2
Glyco_transf_7C	PF02709.14	gi|345007351|ref|YP_004810203.1|	-	1e-05	25.1	0.0	1.8e-05	24.3	0.0	1.4	1	0	0	1	1	1	1	N-terminal	domain	of	galactosyltransferase
Glyco_tranf_2_5	PF13712.6	gi|345007351|ref|YP_004810203.1|	-	0.0031	17.2	0.0	0.029	14.0	0.0	2.1	1	1	0	1	1	1	1	Glycosyltransferase	like	family
Glyco_tranf_2_4	PF13704.6	gi|345007351|ref|YP_004810203.1|	-	0.046	14.2	0.0	0.12	12.9	0.0	1.7	1	0	0	1	1	1	0	Glycosyl	transferase	family	2
GlcNAc	PF11397.8	gi|345007351|ref|YP_004810203.1|	-	0.076	12.4	0.1	0.098	12.1	0.1	1.1	1	0	0	1	1	1	0	Glycosyltransferase	(GlcNAc)
Glycos_transf_1	PF00534.20	gi|345007352|ref|YP_004810204.1|	-	4.3e-36	124.0	0.0	6.4e-36	123.5	0.0	1.2	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.6	gi|345007352|ref|YP_004810204.1|	-	2e-34	118.9	0.0	3e-34	118.3	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_transf_4	PF13439.6	gi|345007352|ref|YP_004810204.1|	-	5.9e-18	65.4	2.1	7e-18	65.2	0.8	1.8	2	1	1	3	3	3	1	Glycosyltransferase	Family	4
Glyco_trans_4_4	PF13579.6	gi|345007352|ref|YP_004810204.1|	-	1.4e-11	45.1	0.4	4.3e-11	43.5	0.1	2.0	2	1	0	2	2	2	1	Glycosyl	transferase	4-like	domain
Glyco_trans_1_2	PF13524.6	gi|345007352|ref|YP_004810204.1|	-	2.6e-05	24.5	0.0	5.5e-05	23.5	0.0	1.5	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_4_2	PF13477.6	gi|345007352|ref|YP_004810204.1|	-	0.0017	18.4	0.1	0.0076	16.3	0.1	2.0	1	1	0	1	1	1	1	Glycosyl	transferase	4-like
baeRF_family10	PF18854.1	gi|345007352|ref|YP_004810204.1|	-	0.013	15.7	0.3	0.067	13.4	0.1	2.0	2	0	0	2	2	2	0	Bacterial	archaeo-eukaryotic	release	factor	family	10
Glyco_transf_5	PF08323.11	gi|345007352|ref|YP_004810204.1|	-	0.024	14.3	0.0	0.046	13.4	0.0	1.5	1	0	0	1	1	1	0	Starch	synthase	catalytic	domain
baeRF_family5	PF18846.1	gi|345007352|ref|YP_004810204.1|	-	0.049	13.8	0.0	0.079	13.2	0.0	1.3	1	0	0	1	1	1	0	Bacterial	archaeo-eukaryotic	release	factor	family	5
DUF3492	PF11997.8	gi|345007352|ref|YP_004810204.1|	-	0.05	13.3	0.1	0.23	11.1	0.0	1.9	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF3492)
DUF3880	PF12996.7	gi|345007352|ref|YP_004810204.1|	-	0.13	12.3	0.0	0.37	10.9	0.0	1.8	1	0	0	1	1	1	0	DUF	based	on	E.	rectale	Gene	description	(DUF3880)
DUF1616	PF07760.11	gi|345007353|ref|YP_004810205.1|	-	1.3e-72	244.7	0.9	1.6e-72	244.4	0.9	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1616)
DUF5408	PF17402.2	gi|345007353|ref|YP_004810205.1|	-	0.27	11.2	1.5	17	5.4	0.0	3.2	3	0	0	3	3	3	0	Family	of	unknown	function	(DUF5408)
CPBP	PF02517.16	gi|345007354|ref|YP_004810206.1|	-	1.5e-13	50.9	7.4	1.5e-13	50.9	7.4	2.2	2	1	0	2	2	2	1	CPBP	intramembrane	metalloprotease
dTDP_sugar_isom	PF00908.17	gi|345007355|ref|YP_004810207.1|	-	2.3e-16	59.9	0.0	2.8e-16	59.7	0.0	1.0	1	0	0	1	1	1	1	dTDP-4-dehydrorhamnose	3,5-epimerase
FdtA	PF05523.11	gi|345007355|ref|YP_004810207.1|	-	0.00034	20.3	0.0	0.00047	19.9	0.0	1.2	1	0	0	1	1	1	1	WxcM-like,	C-terminal
Cupin_2	PF07883.11	gi|345007355|ref|YP_004810207.1|	-	0.033	13.9	0.1	0.32	10.7	0.1	2.1	1	1	0	1	1	1	0	Cupin	domain
40S_S4_C	PF16121.5	gi|345007355|ref|YP_004810207.1|	-	0.09	12.4	0.0	0.23	11.1	0.0	1.6	2	0	0	2	2	2	0	40S	ribosomal	protein	S4	C-terminus
NTP_transferase	PF00483.23	gi|345007356|ref|YP_004810208.1|	-	4.1e-54	183.8	0.0	5e-54	183.5	0.0	1.1	1	0	0	1	1	1	1	Nucleotidyl	transferase
NTP_transf_3	PF12804.7	gi|345007356|ref|YP_004810208.1|	-	2e-09	38.0	0.0	2.6e-09	37.7	0.0	1.3	1	0	0	1	1	1	1	MobA-like	NTP	transferase	domain
Hexapep	PF00132.24	gi|345007356|ref|YP_004810208.1|	-	9e-06	25.2	2.1	0.0053	16.4	0.1	3.4	3	1	1	4	4	4	2	Bacterial	transferase	hexapeptide	(six	repeats)
IspD	PF01128.19	gi|345007356|ref|YP_004810208.1|	-	0.0072	16.1	0.0	0.012	15.4	0.0	1.3	1	0	0	1	1	1	1	2-C-methyl-D-erythritol	4-phosphate	cytidylyltransferase
DNA_ligase_ZBD	PF03119.16	gi|345007357|ref|YP_004810209.1|	-	5.1e-06	26.4	1.7	8.1e-06	25.8	1.7	1.4	1	0	0	1	1	1	1	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
zf-ACC	PF17848.1	gi|345007357|ref|YP_004810209.1|	-	0.002	18.2	1.1	0.0076	16.3	0.0	2.2	2	1	0	2	2	2	1	Acetyl-coA	carboxylase	zinc	finger	domain
IBR	PF01485.21	gi|345007357|ref|YP_004810209.1|	-	0.013	15.7	0.3	0.53	10.6	0.0	2.0	1	1	1	2	2	2	0	IBR	domain,	a	half	RING-finger	domain
zf_UBZ	PF18439.1	gi|345007357|ref|YP_004810209.1|	-	0.017	14.7	0.1	0.056	13.0	0.0	1.8	2	0	0	2	2	2	0	Ubiquitin-Binding	Zinc	Finger
OrfB_Zn_ribbon	PF07282.11	gi|345007357|ref|YP_004810209.1|	-	0.034	14.1	0.4	0.046	13.7	0.4	1.2	1	0	0	1	1	1	0	Putative	transposase	DNA-binding	domain
TF_Zn_Ribbon	PF08271.12	gi|345007357|ref|YP_004810209.1|	-	0.05	13.1	0.1	0.05	13.1	0.1	2.1	2	1	0	2	2	2	0	TFIIB	zinc-binding
Zn_Tnp_IS1595	PF12760.7	gi|345007357|ref|YP_004810209.1|	-	0.077	13.0	0.5	0.28	11.2	0.1	1.9	2	0	0	2	2	2	0	Transposase	zinc-ribbon	domain
zf-C2H2	PF00096.26	gi|345007357|ref|YP_004810209.1|	-	0.11	13.0	0.1	1.8	9.2	0.0	2.2	2	0	0	2	2	2	0	Zinc	finger,	C2H2	type
RmlD_sub_bind	PF04321.17	gi|345007358|ref|YP_004810210.1|	-	7.6e-71	238.5	0.0	8.4e-71	238.4	0.0	1.0	1	0	0	1	1	1	1	RmlD	substrate	binding	domain
Epimerase	PF01370.21	gi|345007358|ref|YP_004810210.1|	-	5.5e-23	81.7	0.0	8.3e-23	81.1	0.0	1.3	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
GDP_Man_Dehyd	PF16363.5	gi|345007358|ref|YP_004810210.1|	-	2.5e-11	43.5	0.0	5.3e-11	42.5	0.0	1.5	1	1	0	1	1	1	1	GDP-mannose	4,6	dehydratase
Polysacc_synt_2	PF02719.15	gi|345007358|ref|YP_004810210.1|	-	1.3e-05	24.5	0.0	8.7e-05	21.8	0.0	2.2	1	1	1	2	2	2	1	Polysaccharide	biosynthesis	protein
NAD_binding_4	PF07993.12	gi|345007358|ref|YP_004810210.1|	-	2.7e-05	23.5	0.0	0.00014	21.2	0.0	2.0	2	1	0	2	2	2	1	Male	sterility	protein
3Beta_HSD	PF01073.19	gi|345007358|ref|YP_004810210.1|	-	0.04	12.9	0.1	0.14	11.1	0.1	1.8	1	1	0	1	1	1	0	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
GDP_Man_Dehyd	PF16363.5	gi|345007359|ref|YP_004810211.1|	-	5.3e-80	269.3	0.0	6e-80	269.1	0.0	1.0	1	0	0	1	1	1	1	GDP-mannose	4,6	dehydratase
Epimerase	PF01370.21	gi|345007359|ref|YP_004810211.1|	-	4.2e-64	216.3	0.0	5.1e-64	216.0	0.0	1.1	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
3Beta_HSD	PF01073.19	gi|345007359|ref|YP_004810211.1|	-	1.5e-23	83.2	0.0	2e-23	82.8	0.0	1.1	1	0	0	1	1	1	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
RmlD_sub_bind	PF04321.17	gi|345007359|ref|YP_004810211.1|	-	3.3e-20	72.4	0.0	4.2e-20	72.0	0.0	1.1	1	0	0	1	1	1	1	RmlD	substrate	binding	domain
Polysacc_synt_2	PF02719.15	gi|345007359|ref|YP_004810211.1|	-	1.4e-19	70.4	0.0	2.2e-18	66.4	0.0	2.0	1	1	0	1	1	1	1	Polysaccharide	biosynthesis	protein
NAD_binding_4	PF07993.12	gi|345007359|ref|YP_004810211.1|	-	8e-15	54.7	0.0	1.4e-13	50.6	0.0	2.3	1	1	0	1	1	1	1	Male	sterility	protein
NAD_binding_10	PF13460.6	gi|345007359|ref|YP_004810211.1|	-	6.8e-12	45.6	0.1	1.1e-11	45.0	0.1	1.3	1	0	0	1	1	1	1	NAD(P)H-binding
NmrA	PF05368.13	gi|345007359|ref|YP_004810211.1|	-	5.9e-06	26.0	0.2	9.1e-06	25.4	0.2	1.2	1	0	0	1	1	1	1	NmrA-like	family
adh_short	PF00106.25	gi|345007359|ref|YP_004810211.1|	-	0.0017	17.9	0.0	0.064	12.7	0.0	2.6	2	1	0	2	2	2	1	short	chain	dehydrogenase
Sacchrp_dh_NADP	PF03435.18	gi|345007359|ref|YP_004810211.1|	-	0.011	16.0	0.1	0.023	15.0	0.1	1.6	1	0	0	1	1	1	0	Saccharopine	dehydrogenase	NADP	binding	domain
KR	PF08659.10	gi|345007359|ref|YP_004810211.1|	-	0.029	14.3	0.1	0.65	9.9	0.1	2.7	1	1	1	2	2	2	0	KR	domain
NUDIX	PF00293.28	gi|345007360|ref|YP_004810212.1|	-	7.5e-11	42.2	0.3	9.6e-11	41.8	0.3	1.1	1	0	0	1	1	1	1	NUDIX	domain
DUF4350	PF14258.6	gi|345007362|ref|YP_004810214.1|	-	0.0048	17.3	0.0	0.0063	16.9	0.0	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4350)
PMT	PF02366.18	gi|345007363|ref|YP_004810215.1|	-	0.01	15.4	2.5	0.012	15.3	2.5	1.1	1	0	0	1	1	1	0	Dolichyl-phosphate-mannose-protein	mannosyltransferase
DUF3487	PF11990.8	gi|345007363|ref|YP_004810215.1|	-	0.21	11.5	3.2	0.28	11.1	3.2	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3487)
OrfB_Zn_ribbon	PF07282.11	gi|345007364|ref|YP_004810216.1|	-	2.8e-23	81.6	0.9	5.5e-23	80.7	0.9	1.5	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
OrfB_IS605	PF01385.19	gi|345007364|ref|YP_004810216.1|	-	6.4e-06	26.4	0.0	1e-05	25.7	0.0	1.4	1	0	0	1	1	1	1	Probable	transposase
zf-piccolo	PF05715.13	gi|345007364|ref|YP_004810216.1|	-	0.033	14.3	0.9	0.086	13.0	0.9	1.6	1	0	0	1	1	1	0	Piccolo	Zn-finger
Rubredoxin_2	PF18073.1	gi|345007364|ref|YP_004810216.1|	-	0.2	11.4	4.6	1.4	8.8	0.3	2.5	2	0	0	2	2	2	0	Rubredoxin	metal	binding	domain
zinc_ribbon_2	PF13240.6	gi|345007364|ref|YP_004810216.1|	-	0.26	11.1	6.3	4.4	7.1	6.3	2.4	1	1	1	2	2	2	0	zinc-ribbon	domain
YdjM	PF04307.14	gi|345007365|ref|YP_004810217.1|	-	7.2e-10	38.4	10.0	1e-09	37.9	10.0	1.3	1	1	0	1	1	1	1	LexA-binding,	inner	membrane-associated	putative	hydrolase
DDE_Tnp_1	PF01609.21	gi|345007366|ref|YP_004810218.1|	-	0.031	13.9	0.1	0.085	12.5	0.1	1.7	1	1	0	1	1	1	0	Transposase	DDE	domain
RNA_POL_M_15KD	PF02150.16	gi|345007367|ref|YP_004810219.1|	-	0.12	12.3	1.5	0.26	11.2	1.5	1.5	1	0	0	1	1	1	0	RNA	polymerases	M/15	Kd	subunit
VWA_2	PF13519.6	gi|345007368|ref|YP_004810220.1|	-	5.1e-07	30.3	0.1	1.1e-06	29.2	0.1	1.5	1	0	0	1	1	1	1	von	Willebrand	factor	type	A	domain
VWA	PF00092.28	gi|345007368|ref|YP_004810220.1|	-	1.9e-06	28.3	0.1	2.6e-06	27.8	0.1	1.4	1	0	0	1	1	1	1	von	Willebrand	factor	type	A	domain
Lactamase_B_2	PF12706.7	gi|345007369|ref|YP_004810221.1|	-	2.1e-08	33.9	2.4	2.1e-08	33.9	2.4	2.2	3	0	0	3	3	3	1	Beta-lactamase	superfamily	domain
Lactamase_B	PF00753.27	gi|345007369|ref|YP_004810221.1|	-	1.4e-06	28.5	8.7	4.6e-06	26.8	8.7	1.9	1	0	0	1	1	1	1	Metallo-beta-lactamase	superfamily
SAPS	PF04499.15	gi|345007369|ref|YP_004810221.1|	-	0.75	8.5	5.1	0.99	8.1	5.1	1.3	1	0	0	1	1	1	0	SIT4	phosphatase-associated	protein
SDA1	PF05285.12	gi|345007369|ref|YP_004810221.1|	-	5.8	6.2	19.0	8.4	5.7	19.0	1.1	1	0	0	1	1	1	0	SDA1
Rrf2	PF02082.20	gi|345007370|ref|YP_004810222.1|	-	0.0012	19.1	0.0	0.0017	18.7	0.0	1.1	1	0	0	1	1	1	1	Transcriptional	regulator
SCNM1_acidic	PF15805.5	gi|345007370|ref|YP_004810222.1|	-	0.0063	16.2	0.1	0.0063	16.2	0.1	1.9	2	0	0	2	2	2	1	Acidic	C-terminal	region	of	sodium	channel	modifier	1	SCNM1
BLACT_WH	PF17778.1	gi|345007370|ref|YP_004810222.1|	-	0.042	13.9	0.0	0.09	12.8	0.0	1.5	1	0	0	1	1	1	0	Beta-lactamase	associated	winged	helix	domain
HTH_Crp_2	PF13545.6	gi|345007370|ref|YP_004810222.1|	-	0.093	12.7	0.0	0.13	12.3	0.0	1.2	1	0	0	1	1	1	0	Crp-like	helix-turn-helix	domain
GntR	PF00392.21	gi|345007370|ref|YP_004810222.1|	-	0.11	12.2	0.0	0.14	11.8	0.0	1.2	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	gntR	family
HTH_5	PF01022.20	gi|345007370|ref|YP_004810222.1|	-	0.16	11.8	0.1	0.28	11.1	0.1	1.2	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
AAA_12	PF13087.6	gi|345007371|ref|YP_004810223.1|	-	9.3e-50	169.0	0.4	1.9e-49	168.0	0.0	1.8	2	0	0	2	2	2	1	AAA	domain
AAA_11	PF13086.6	gi|345007371|ref|YP_004810223.1|	-	4.5e-29	102.0	4.1	2.2e-14	53.9	0.1	3.0	2	1	1	3	3	3	2	AAA	domain
AAA_30	PF13604.6	gi|345007371|ref|YP_004810223.1|	-	5.8e-16	58.8	0.1	1.2e-15	57.7	0.1	1.5	1	0	0	1	1	1	1	AAA	domain
Viral_helicase1	PF01443.18	gi|345007371|ref|YP_004810223.1|	-	1.7e-08	34.5	2.9	0.0085	15.9	0.0	3.6	4	0	0	4	4	4	3	Viral	(Superfamily	1)	RNA	helicase
AAA_19	PF13245.6	gi|345007371|ref|YP_004810223.1|	-	3.4e-08	33.9	0.1	1.4e-07	31.9	0.0	2.0	2	0	0	2	2	2	1	AAA	domain
UvrD_C	PF13361.6	gi|345007371|ref|YP_004810223.1|	-	4.7e-06	26.2	0.2	0.02	14.3	0.0	3.1	2	1	1	3	3	3	2	UvrD-like	helicase	C-terminal	domain
ABC_tran	PF00005.27	gi|345007371|ref|YP_004810223.1|	-	8.7e-06	26.3	0.0	3.5e-05	24.4	0.0	2.1	1	0	0	1	1	1	1	ABC	transporter
ResIII	PF04851.15	gi|345007371|ref|YP_004810223.1|	-	2.8e-05	24.2	0.3	9.9e-05	22.4	0.0	2.1	3	0	0	3	3	2	1	Type	III	restriction	enzyme,	res	subunit
AAA_16	PF13191.6	gi|345007371|ref|YP_004810223.1|	-	8.3e-05	23.0	0.1	0.00053	20.4	0.0	2.3	2	0	0	2	2	2	1	AAA	ATPase	domain
AAA	PF00004.29	gi|345007371|ref|YP_004810223.1|	-	0.00015	22.2	0.9	0.0027	18.1	0.0	3.0	3	1	0	3	3	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
DUF2075	PF09848.9	gi|345007371|ref|YP_004810223.1|	-	0.0013	18.0	0.4	0.014	14.7	0.0	2.6	3	0	0	3	3	3	1	Uncharacterized	conserved	protein	(DUF2075)
AAA_22	PF13401.6	gi|345007371|ref|YP_004810223.1|	-	0.0016	18.7	0.7	0.0078	16.5	0.0	2.5	3	1	1	4	4	3	1	AAA	domain
UvrD_C_2	PF13538.6	gi|345007371|ref|YP_004810223.1|	-	0.0036	17.1	0.0	0.017	14.9	0.0	2.1	1	1	0	1	1	1	1	UvrD-like	helicase	C-terminal	domain
IstB_IS21	PF01695.17	gi|345007371|ref|YP_004810223.1|	-	0.007	16.1	0.0	0.019	14.7	0.0	1.7	1	0	0	1	1	1	1	IstB-like	ATP	binding	protein
Helicase_RecD	PF05127.14	gi|345007371|ref|YP_004810223.1|	-	0.015	15.1	0.2	0.081	12.8	0.2	2.2	1	1	0	1	1	1	0	Helicase
AAA_28	PF13521.6	gi|345007371|ref|YP_004810223.1|	-	0.053	13.8	0.0	0.12	12.6	0.0	1.6	1	0	0	1	1	1	0	AAA	domain
RNA_helicase	PF00910.22	gi|345007371|ref|YP_004810223.1|	-	0.086	13.2	0.0	0.37	11.2	0.0	2.1	2	0	0	2	2	2	0	RNA	helicase
AAA_5	PF07728.14	gi|345007371|ref|YP_004810223.1|	-	0.14	12.1	0.0	0.46	10.5	0.0	1.8	1	0	0	1	1	1	0	AAA	domain	(dynein-related	subfamily)
PIF1	PF05970.14	gi|345007371|ref|YP_004810223.1|	-	0.16	11.1	0.0	1.6	7.8	0.0	2.2	2	0	0	2	2	2	0	PIF1-like	helicase
DDE_Tnp_1	PF01609.21	gi|345007372|ref|YP_004810224.1|	-	0.031	13.9	0.1	0.085	12.5	0.1	1.7	1	1	0	1	1	1	0	Transposase	DDE	domain
PMT_2	PF13231.6	gi|345007373|ref|YP_004810225.1|	-	2.2e-08	34.5	14.3	2.2e-08	34.5	14.3	2.0	2	0	0	2	2	2	1	Dolichyl-phosphate-mannose-protein	mannosyltransferase
PTPS_related	PF10131.9	gi|345007373|ref|YP_004810225.1|	-	0.00025	19.5	16.5	0.00025	19.5	16.5	1.5	2	0	0	2	2	2	1	6-pyruvoyl-tetrahydropterin	synthase	related	domain;	membrane	protein
DUF2206	PF09971.9	gi|345007375|ref|YP_004810227.1|	-	0.00028	19.8	0.0	0.00082	18.2	0.0	1.7	1	1	0	1	1	1	1	Predicted	membrane	protein	(DUF2206)
Glycos_transf_2	PF00535.26	gi|345007376|ref|YP_004810228.1|	-	1.6e-24	86.6	0.0	4.1e-24	85.3	0.0	1.6	2	0	0	2	2	2	1	Glycosyl	transferase	family	2
Glyco_tranf_2_3	PF13641.6	gi|345007376|ref|YP_004810228.1|	-	9.2e-08	32.2	0.3	1.2e-06	28.6	0.0	2.1	2	0	0	2	2	2	1	Glycosyltransferase	like	family	2
NTP_transf_3	PF12804.7	gi|345007376|ref|YP_004810228.1|	-	0.00058	20.3	1.2	0.053	13.9	0.1	2.4	2	0	0	2	2	2	2	MobA-like	NTP	transferase	domain
Glyco_tranf_2_4	PF13704.6	gi|345007376|ref|YP_004810228.1|	-	0.0007	20.1	0.0	0.0041	17.6	0.0	2.1	2	0	0	2	2	2	1	Glycosyl	transferase	family	2
Pec_lyase	PF09492.10	gi|345007378|ref|YP_004810230.1|	-	0.019	14.3	0.0	0.11	11.8	0.0	2.0	2	0	0	2	2	2	0	Pectic	acid	lyase
Glyco_tranf_2_3	PF13641.6	gi|345007379|ref|YP_004810231.1|	-	3.9e-22	79.3	0.2	5.3e-22	78.8	0.2	1.2	1	0	0	1	1	1	1	Glycosyltransferase	like	family	2
Glycos_transf_2	PF00535.26	gi|345007379|ref|YP_004810231.1|	-	1.5e-18	67.2	0.0	2.3e-18	66.6	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_trans_2_3	PF13632.6	gi|345007379|ref|YP_004810231.1|	-	2.2e-10	40.8	0.6	4e-10	39.9	0.6	1.4	1	0	0	1	1	1	1	Glycosyl	transferase	family	group	2
Glyco_transf_21	PF13506.6	gi|345007379|ref|YP_004810231.1|	-	1.1e-06	28.3	0.0	2e-06	27.4	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	transferase	family	21
Glyco_tranf_2_2	PF10111.9	gi|345007379|ref|YP_004810231.1|	-	4.5e-05	23.1	0.0	0.073	12.5	0.0	2.1	2	0	0	2	2	2	2	Glycosyltransferase	like	family	2
Glycos_transf_1	PF00534.20	gi|345007380|ref|YP_004810232.1|	-	5.5e-26	91.1	0.0	1.3e-25	89.9	0.0	1.6	2	0	0	2	2	2	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.6	gi|345007380|ref|YP_004810232.1|	-	1.7e-18	67.4	0.0	3.1e-18	66.5	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_transf_4	PF13439.6	gi|345007380|ref|YP_004810232.1|	-	2.2e-14	53.8	0.1	3.5e-13	49.9	0.1	2.2	2	0	0	2	2	2	1	Glycosyltransferase	Family	4
Glyco_trans_4_4	PF13579.6	gi|345007380|ref|YP_004810232.1|	-	1.3e-10	41.9	0.6	3.1e-09	37.5	0.3	2.7	2	1	1	3	3	3	1	Glycosyl	transferase	4-like	domain
Glyco_trans_4_2	PF13477.6	gi|345007380|ref|YP_004810232.1|	-	0.0018	18.3	0.3	0.0087	16.1	0.1	2.2	2	0	0	2	2	2	1	Glycosyl	transferase	4-like
Polysacc_synt_C	PF14667.6	gi|345007381|ref|YP_004810233.1|	-	3e-22	79.2	20.9	3e-22	79.2	20.9	3.8	2	1	1	3	3	3	1	Polysaccharide	biosynthesis	C-terminal	domain
Polysacc_synt_3	PF13440.6	gi|345007381|ref|YP_004810233.1|	-	1.1e-20	74.1	14.1	1.1e-20	74.1	14.1	2.3	2	1	1	3	3	3	1	Polysaccharide	biosynthesis	protein
Polysacc_synt	PF01943.17	gi|345007381|ref|YP_004810233.1|	-	6.1e-14	52.1	22.0	6.1e-14	52.1	22.0	2.8	1	1	2	3	3	3	2	Polysaccharide	biosynthesis	protein
MurJ	PF03023.14	gi|345007381|ref|YP_004810233.1|	-	1.1e-13	50.6	24.0	1.1e-13	50.6	24.0	2.2	2	1	0	2	2	2	1	Lipid	II	flippase	MurJ
MatE	PF01554.18	gi|345007381|ref|YP_004810233.1|	-	3.1e-10	40.0	4.7	3.1e-10	40.0	4.7	4.6	4	2	0	4	4	4	1	MatE
PglZ	PF08665.12	gi|345007382|ref|YP_004810234.1|	-	0.04	14.0	0.3	0.18	11.8	0.1	2.0	2	0	0	2	2	2	0	PglZ	domain
DDE_Tnp_IS66	PF03050.14	gi|345007383|ref|YP_004810235.1|	-	4.4e-49	167.5	0.2	4.4e-49	167.5	0.2	1.9	2	0	0	2	2	2	1	Transposase	IS66	family
SlyX	PF04102.12	gi|345007383|ref|YP_004810235.1|	-	0.00015	22.3	5.5	0.00052	20.6	5.5	1.9	1	0	0	1	1	1	1	SlyX
MscS_porin	PF12795.7	gi|345007383|ref|YP_004810235.1|	-	0.0008	19.0	5.1	0.0008	19.0	5.1	1.8	2	0	0	2	2	2	1	Mechanosensitive	ion	channel	porin	domain
UPF0242	PF06785.11	gi|345007383|ref|YP_004810235.1|	-	0.0026	17.9	11.2	0.0048	17.0	11.2	1.4	1	0	0	1	1	1	1	Uncharacterised	protein	family	(UPF0242)	N-terminus
DUF16	PF01519.16	gi|345007383|ref|YP_004810235.1|	-	0.0029	18.1	5.6	0.0061	17.0	5.6	1.4	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF16
zf-IS66	PF13005.7	gi|345007383|ref|YP_004810235.1|	-	0.0036	17.7	3.7	0.0036	17.7	3.7	2.6	3	0	0	3	3	1	1	zinc-finger	binding	domain	of	transposase	IS66
HemX	PF04375.14	gi|345007383|ref|YP_004810235.1|	-	0.0046	16.3	2.5	0.0074	15.6	2.5	1.2	1	0	0	1	1	1	1	HemX,	putative	uroporphyrinogen-III	C-methyltransferase
Atg14	PF10186.9	gi|345007383|ref|YP_004810235.1|	-	0.006	15.7	4.1	0.01	15.0	4.1	1.3	1	0	0	1	1	1	1	Vacuolar	sorting	38	and	autophagy-related	subunit	14
SKA1	PF07160.12	gi|345007383|ref|YP_004810235.1|	-	0.0097	15.8	0.7	0.017	15.0	0.7	1.3	1	0	0	1	1	1	1	Spindle	and	kinetochore-associated	protein	1
YkyA	PF10368.9	gi|345007383|ref|YP_004810235.1|	-	0.021	14.5	6.4	0.037	13.7	6.4	1.2	1	0	0	1	1	1	0	Putative	cell-wall	binding	lipoprotein
ATG16	PF08614.11	gi|345007383|ref|YP_004810235.1|	-	0.027	14.7	7.0	0.027	14.7	7.0	2.1	3	0	0	3	3	1	0	Autophagy	protein	16	(ATG16)
HOOK	PF05622.12	gi|345007383|ref|YP_004810235.1|	-	0.03	12.5	6.0	0.044	11.9	6.0	1.1	1	0	0	1	1	1	0	HOOK	protein
DDE_Tnp_IS240	PF13610.6	gi|345007383|ref|YP_004810235.1|	-	0.037	14.3	3.3	0.43	10.8	0.0	2.6	2	1	0	2	2	2	0	DDE	domain
AAA_23	PF13476.6	gi|345007383|ref|YP_004810235.1|	-	0.037	14.5	4.7	0.08	13.4	4.7	1.5	1	0	0	1	1	1	0	AAA	domain
Noelin-1	PF12308.8	gi|345007383|ref|YP_004810235.1|	-	0.042	13.8	2.0	0.085	12.9	0.9	1.9	2	0	0	2	2	2	0	Neurogenesis	glycoprotein
Phage_Mu_Gam	PF07352.12	gi|345007383|ref|YP_004810235.1|	-	0.048	13.6	4.8	0.087	12.7	4.8	1.4	1	0	0	1	1	1	0	Bacteriophage	Mu	Gam	like	protein
DUF3584	PF12128.8	gi|345007383|ref|YP_004810235.1|	-	0.059	10.9	6.5	0.088	10.3	6.5	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3584)
XhlA	PF10779.9	gi|345007383|ref|YP_004810235.1|	-	0.062	13.5	8.4	0.15	12.3	8.4	1.7	1	0	0	1	1	1	0	Haemolysin	XhlA
TMPIT	PF07851.13	gi|345007383|ref|YP_004810235.1|	-	0.077	12.2	3.2	0.12	11.6	3.2	1.2	1	0	0	1	1	1	0	TMPIT-like	protein
Phage_HK97_TLTM	PF06120.11	gi|345007383|ref|YP_004810235.1|	-	0.094	11.9	1.1	0.15	11.3	1.1	1.2	1	0	0	1	1	1	0	Tail	length	tape	measure	protein
Exonuc_VII_L	PF02601.15	gi|345007383|ref|YP_004810235.1|	-	0.1	12.1	1.3	0.24	10.9	1.3	1.5	1	0	0	1	1	1	0	Exonuclease	VII,	large	subunit
Fmp27_WPPW	PF10359.9	gi|345007383|ref|YP_004810235.1|	-	0.11	11.3	2.2	0.17	10.7	2.2	1.2	1	0	0	1	1	1	0	RNA	pol	II	promoter	Fmp27	protein	domain
DUF1664	PF07889.12	gi|345007383|ref|YP_004810235.1|	-	0.11	12.5	2.0	0.21	11.7	2.0	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1664)
FPP	PF05911.11	gi|345007383|ref|YP_004810235.1|	-	0.11	10.6	5.4	0.15	10.2	5.4	1.1	1	0	0	1	1	1	0	Filament-like	plant	protein,	long	coiled-coil
HSBP1	PF06825.12	gi|345007383|ref|YP_004810235.1|	-	0.18	11.7	5.5	0.45	10.4	1.1	2.4	1	1	0	2	2	2	0	Heat	shock	factor	binding	protein	1
DUF4446	PF14584.6	gi|345007383|ref|YP_004810235.1|	-	0.19	11.7	2.9	0.34	10.9	2.9	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF4446)
BST2	PF16716.5	gi|345007383|ref|YP_004810235.1|	-	0.26	11.9	6.2	0.68	10.5	6.2	1.7	1	0	0	1	1	1	0	Bone	marrow	stromal	antigen	2
FlaC_arch	PF05377.11	gi|345007383|ref|YP_004810235.1|	-	0.31	11.5	7.4	0.72	10.3	7.4	1.6	1	0	0	1	1	1	0	Flagella	accessory	protein	C	(FlaC)
FliS	PF02561.14	gi|345007383|ref|YP_004810235.1|	-	0.37	11.1	3.1	3.2	8.0	0.6	2.4	2	0	0	2	2	2	0	Flagellar	protein	FliS
AAA_13	PF13166.6	gi|345007383|ref|YP_004810235.1|	-	0.84	8.2	4.7	1.2	7.6	4.7	1.1	1	0	0	1	1	1	0	AAA	domain
ATP-synt_E	PF05680.12	gi|345007383|ref|YP_004810235.1|	-	0.87	10.0	4.7	2.7	8.4	4.7	1.9	1	0	0	1	1	1	0	ATP	synthase	E	chain
Fzo_mitofusin	PF04799.13	gi|345007383|ref|YP_004810235.1|	-	0.88	9.1	3.3	1.6	8.2	3.3	1.3	1	0	0	1	1	1	0	fzo-like	conserved	region
Synaptobrevin	PF00957.21	gi|345007383|ref|YP_004810235.1|	-	1.9	8.3	3.4	3.9	7.3	3.4	1.4	1	0	0	1	1	1	0	Synaptobrevin
PKcGMP_CC	PF16808.5	gi|345007383|ref|YP_004810235.1|	-	2	8.3	20.5	2.9	7.8	13.4	2.9	1	1	1	2	2	2	0	Coiled-coil	N-terminus	of	cGMP-dependent	protein	kinase
UPF0449	PF15136.6	gi|345007383|ref|YP_004810235.1|	-	2.9	8.4	10.9	14	6.3	5.1	2.8	2	0	0	2	2	2	0	Uncharacterised	protein	family	UPF0449
Spc7	PF08317.11	gi|345007383|ref|YP_004810235.1|	-	3.7	6.3	14.0	0.086	11.7	6.7	1.8	2	0	0	2	2	2	0	Spc7	kinetochore	protein
TMF_DNA_bd	PF12329.8	gi|345007383|ref|YP_004810235.1|	-	5.3	7.1	15.6	0.74	9.8	11.5	1.7	2	0	0	2	2	1	0	TATA	element	modulatory	factor	1	DNA	binding
FemAB	PF02388.16	gi|345007383|ref|YP_004810235.1|	-	5.4	5.8	6.3	8.1	5.2	6.3	1.1	1	0	0	1	1	1	0	FemAB	family
DUF3552	PF12072.8	gi|345007383|ref|YP_004810235.1|	-	5.5	6.4	21.2	0.04	13.3	11.5	2.0	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF3552)
DUF5446	PF17522.2	gi|345007383|ref|YP_004810235.1|	-	6.6	7.0	12.0	23	5.3	12.0	1.9	1	0	0	1	1	1	0	Family	of	unknown	function	(DUF5446)
Med9	PF07544.13	gi|345007383|ref|YP_004810235.1|	-	6.6	6.9	12.5	45	4.2	12.5	2.3	1	1	0	1	1	1	0	RNA	polymerase	II	transcription	mediator	complex	subunit	9
bPH_2	PF03703.14	gi|345007384|ref|YP_004810236.1|	-	2.1e-17	63.1	0.2	3.4e-17	62.4	0.2	1.3	1	0	0	1	1	1	1	Bacterial	PH	domain
DUF1180	PF06679.12	gi|345007384|ref|YP_004810236.1|	-	0.0053	17.2	0.6	0.0095	16.4	0.6	1.4	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1180)
DUF2975	PF11188.8	gi|345007384|ref|YP_004810236.1|	-	1.1	9.1	6.1	1.7	8.5	6.1	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2975)
bPH_2	PF03703.14	gi|345007385|ref|YP_004810237.1|	-	2.7e-50	168.5	6.5	1.1e-21	76.8	0.3	3.3	3	0	0	3	3	3	3	Bacterial	PH	domain
bPH_4	PF06713.11	gi|345007385|ref|YP_004810237.1|	-	0.011	15.8	0.0	0.53	10.4	0.0	2.8	3	0	0	3	3	3	0	Bacterial	PH	domain
bPH_5	PF10882.8	gi|345007385|ref|YP_004810237.1|	-	0.034	14.2	0.0	3.1	7.9	0.0	2.9	3	0	0	3	3	3	0	Bacterial	PH	domain
DUF4213	PF13938.6	gi|345007385|ref|YP_004810237.1|	-	0.056	13.7	0.1	1.6	9.0	0.1	2.4	2	0	0	2	2	2	0	Putative	heavy-metal	chelation
Cdc6_C	PF09079.11	gi|345007386|ref|YP_004810238.1|	-	6e-17	61.4	0.0	1.4e-16	60.3	0.0	1.6	1	0	0	1	1	1	1	CDC6,	C	terminal	winged	helix	domain
AAA_22	PF13401.6	gi|345007386|ref|YP_004810238.1|	-	2.4e-08	34.3	0.0	6.1e-08	33.0	0.0	1.6	1	0	0	1	1	1	1	AAA	domain
AAA_16	PF13191.6	gi|345007386|ref|YP_004810238.1|	-	2.8e-07	31.1	0.3	5.4e-05	23.6	0.0	2.8	2	1	0	2	2	2	1	AAA	ATPase	domain
NACHT	PF05729.12	gi|345007386|ref|YP_004810238.1|	-	3e-06	27.2	0.0	6e-06	26.3	0.0	1.5	1	0	0	1	1	1	1	NACHT	domain
AAA	PF00004.29	gi|345007386|ref|YP_004810238.1|	-	0.00029	21.3	0.0	0.00064	20.2	0.0	1.6	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
Phage-MuB_C	PF09077.11	gi|345007386|ref|YP_004810238.1|	-	0.0056	16.5	0.1	0.018	14.9	0.1	1.8	1	0	0	1	1	1	1	Mu	B	transposition	protein,	C	terminal
GMC_oxred_C	PF05199.13	gi|345007388|ref|YP_004810240.1|	-	2.1e-22	80.2	0.6	5.1e-22	79.0	0.2	1.9	2	0	0	2	2	1	1	GMC	oxidoreductase
GMC_oxred_N	PF00732.19	gi|345007388|ref|YP_004810240.1|	-	1.2e-13	51.1	0.0	1.7e-13	50.6	0.0	1.2	1	0	0	1	1	1	1	GMC	oxidoreductase
DAO	PF01266.24	gi|345007388|ref|YP_004810240.1|	-	1.4e-13	51.2	2.1	2.2e-12	47.3	0.8	2.8	2	1	0	2	2	2	1	FAD	dependent	oxidoreductase
FAD_binding_3	PF01494.19	gi|345007388|ref|YP_004810240.1|	-	3.1e-09	36.6	0.8	3.1e-06	26.7	0.0	2.2	2	0	0	2	2	2	2	FAD	binding	domain
FAD_binding_2	PF00890.24	gi|345007388|ref|YP_004810240.1|	-	5.3e-08	32.4	0.1	6.7e-05	22.1	0.1	2.2	2	0	0	2	2	2	2	FAD	binding	domain
NAD_binding_8	PF13450.6	gi|345007388|ref|YP_004810240.1|	-	1.3e-07	31.7	0.1	3.4e-07	30.4	0.1	1.7	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
Pyr_redox_2	PF07992.14	gi|345007388|ref|YP_004810240.1|	-	3.5e-06	26.5	0.0	8.1e-05	22.0	0.0	2.4	3	0	0	3	3	3	1	Pyridine	nucleotide-disulphide	oxidoreductase
HI0933_like	PF03486.14	gi|345007388|ref|YP_004810240.1|	-	3.8e-06	25.9	0.1	3.4e-05	22.7	0.1	2.0	2	0	0	2	2	2	1	HI0933-like	protein
FAD_oxidored	PF12831.7	gi|345007388|ref|YP_004810240.1|	-	0.00015	21.3	0.1	0.001	18.6	0.6	2.0	2	0	0	2	2	2	1	FAD	dependent	oxidoreductase
Pyr_redox_3	PF13738.6	gi|345007388|ref|YP_004810240.1|	-	0.00057	19.2	0.0	0.0011	18.3	0.0	1.4	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Thi4	PF01946.17	gi|345007388|ref|YP_004810240.1|	-	0.00079	18.7	0.0	0.0014	17.9	0.0	1.3	1	0	0	1	1	1	1	Thi4	family
Lycopene_cycl	PF05834.12	gi|345007388|ref|YP_004810240.1|	-	0.00088	18.4	0.0	0.0012	17.9	0.0	1.2	1	0	0	1	1	1	1	Lycopene	cyclase	protein
Pyr_redox	PF00070.27	gi|345007388|ref|YP_004810240.1|	-	0.0037	17.8	0.0	0.057	14.0	0.0	2.5	3	0	0	3	3	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
GIDA	PF01134.22	gi|345007388|ref|YP_004810240.1|	-	0.0044	16.2	0.0	0.0075	15.4	0.0	1.3	1	0	0	1	1	1	1	Glucose	inhibited	division	protein	A
UDPG_MGDP_dh_N	PF03721.14	gi|345007388|ref|YP_004810240.1|	-	0.013	15.1	0.1	0.022	14.3	0.1	1.3	1	0	0	1	1	1	0	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
ApbA	PF02558.16	gi|345007388|ref|YP_004810240.1|	-	0.017	14.8	0.0	0.033	13.8	0.0	1.5	1	0	0	1	1	1	0	Ketopantoate	reductase	PanE/ApbA
3HCDH_N	PF02737.18	gi|345007388|ref|YP_004810240.1|	-	0.049	13.5	0.0	0.077	12.9	0.0	1.3	1	0	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
Rossmann-like	PF10727.9	gi|345007388|ref|YP_004810240.1|	-	0.062	13.2	0.0	0.12	12.3	0.0	1.4	1	0	0	1	1	1	0	Rossmann-like	domain
Amino_oxidase	PF01593.24	gi|345007388|ref|YP_004810240.1|	-	0.078	12.3	1.0	0.16	11.2	0.2	1.8	2	0	0	2	2	2	0	Flavin	containing	amine	oxidoreductase
NAD_binding_7	PF13241.6	gi|345007388|ref|YP_004810240.1|	-	0.19	12.2	0.0	0.42	11.1	0.0	1.5	1	0	0	1	1	1	0	Putative	NAD(P)-binding
Trp_halogenase	PF04820.14	gi|345007388|ref|YP_004810240.1|	-	0.2	10.4	0.2	0.35	9.7	0.0	1.4	2	0	0	2	2	2	0	Tryptophan	halogenase
TAT_signal	PF10518.9	gi|345007389|ref|YP_004810241.1|	-	0.00011	21.9	0.5	0.0041	16.9	0.6	2.5	2	0	0	2	2	2	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
Gluconate_2-dh3	PF13618.6	gi|345007389|ref|YP_004810241.1|	-	0.0088	16.3	0.0	0.019	15.2	0.0	1.6	1	1	0	1	1	1	1	Gluconate	2-dehydrogenase	subunit	3
DUF3180	PF11377.8	gi|345007390|ref|YP_004810242.1|	-	0.003	17.7	4.9	0.003	17.7	4.9	4.1	1	1	2	4	4	4	2	Protein	of	unknown	function	(DUF3180)
Stn1	PF10451.9	gi|345007390|ref|YP_004810242.1|	-	3	6.7	4.3	0.63	9.0	0.9	1.5	2	0	0	2	2	2	0	Telomere	regulation	protein	Stn1
HalOD1	PF18545.1	gi|345007391|ref|YP_004810243.1|	-	1.3e-18	67.0	2.5	1.6e-18	66.7	2.5	1.1	1	0	0	1	1	1	1	Halobacterial	output	domain	1
PadR	PF03551.14	gi|345007393|ref|YP_004810245.1|	-	6.9e-10	38.7	0.0	8.2e-10	38.5	0.0	1.1	1	0	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
FUR	PF01475.19	gi|345007393|ref|YP_004810245.1|	-	0.00059	20.0	0.0	0.00074	19.7	0.0	1.1	1	0	0	1	1	1	1	Ferric	uptake	regulator	family
HTH_45	PF14947.6	gi|345007393|ref|YP_004810245.1|	-	0.18	11.8	0.0	0.24	11.4	0.0	1.3	1	0	0	1	1	1	0	Winged	helix-turn-helix
HTH_20	PF12840.7	gi|345007395|ref|YP_004810247.1|	-	0.0014	18.6	0.2	0.19	11.8	0.0	2.4	2	0	0	2	2	2	2	Helix-turn-helix	domain
DDE_3	PF13358.6	gi|345007396|ref|YP_004810248.1|	-	2.2e-26	92.3	0.0	3.8e-26	91.6	0.0	1.4	1	0	0	1	1	1	1	DDE	superfamily	endonuclease
HTH_32	PF13565.6	gi|345007396|ref|YP_004810248.1|	-	5.7e-15	55.7	1.1	3.1e-14	53.3	0.6	2.5	3	0	0	3	3	3	1	Homeodomain-like	domain
HTH_23	PF13384.6	gi|345007396|ref|YP_004810248.1|	-	2.3e-12	46.3	0.1	8.9e-11	41.3	0.0	2.8	2	1	0	2	2	2	1	Homeodomain-like	domain
HTH_29	PF13551.6	gi|345007396|ref|YP_004810248.1|	-	6.1e-12	45.4	0.5	1.8e-11	43.9	0.5	1.8	2	0	0	2	2	2	1	Winged	helix-turn	helix
HTH_28	PF13518.6	gi|345007396|ref|YP_004810248.1|	-	3.7e-05	23.8	0.2	0.00022	21.3	0.1	2.3	2	0	0	2	2	2	1	Helix-turn-helix	domain
Terminase_5	PF06056.12	gi|345007396|ref|YP_004810248.1|	-	0.02	14.8	0.0	0.067	13.1	0.0	1.9	1	0	0	1	1	1	0	Putative	ATPase	subunit	of	terminase	(gpP-like)
GDE_N	PF12439.8	gi|345007396|ref|YP_004810248.1|	-	0.07	12.5	0.2	0.13	11.7	0.2	1.3	1	0	0	1	1	1	0	Glycogen	debranching	enzyme	N	terminal
HTH_Tnp_Tc3_2	PF01498.18	gi|345007396|ref|YP_004810248.1|	-	0.081	13.2	0.0	0.2	11.9	0.0	1.7	1	0	0	1	1	1	0	Transposase
CRF	PF00473.17	gi|345007397|ref|YP_004810249.1|	-	0.008	16.2	0.1	0.017	15.2	0.1	1.5	1	0	0	1	1	1	1	Corticotropin-releasing	factor	family
HTH_11	PF08279.12	gi|345007397|ref|YP_004810249.1|	-	0.034	14.1	0.1	0.074	13.0	0.1	1.6	1	0	0	1	1	1	0	HTH	domain
DUF2398	PF09661.10	gi|345007397|ref|YP_004810249.1|	-	0.086	12.1	0.1	0.11	11.7	0.1	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2398)
DDE_Tnp_1	PF01609.21	gi|345007398|ref|YP_004810250.1|	-	0.027	14.1	0.1	0.14	11.8	0.0	2.1	1	1	0	1	1	1	0	Transposase	DDE	domain
ThiF	PF00899.21	gi|345007400|ref|YP_004810252.1|	-	1.9e-26	93.0	0.0	2.7e-26	92.4	0.0	1.1	1	0	0	1	1	1	1	ThiF	family
ApbA	PF02558.16	gi|345007400|ref|YP_004810252.1|	-	0.013	15.2	0.1	0.021	14.5	0.1	1.3	1	0	0	1	1	1	0	Ketopantoate	reductase	PanE/ApbA
2-Hacid_dh_C	PF02826.19	gi|345007400|ref|YP_004810252.1|	-	0.021	14.2	0.1	0.047	13.0	0.1	1.5	1	0	0	1	1	1	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
UDPG_MGDP_dh_N	PF03721.14	gi|345007400|ref|YP_004810252.1|	-	0.03	13.9	0.0	0.049	13.2	0.0	1.3	1	0	0	1	1	1	0	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
Rossmann-like	PF10727.9	gi|345007400|ref|YP_004810252.1|	-	0.042	13.7	0.1	0.1	12.4	0.1	1.7	1	0	0	1	1	1	0	Rossmann-like	domain
NPV_P10	PF05531.12	gi|345007402|ref|YP_004810254.1|	-	0.002	18.6	0.3	2.2	8.8	0.2	2.2	1	1	1	2	2	2	2	Nucleopolyhedrovirus	P10	protein
AIP3	PF03915.13	gi|345007402|ref|YP_004810254.1|	-	0.015	14.4	0.4	0.067	12.3	0.4	1.8	1	1	0	1	1	1	0	Actin	interacting	protein	3
DUF1664	PF07889.12	gi|345007402|ref|YP_004810254.1|	-	0.089	12.8	0.1	1.8	8.6	0.0	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1664)
Phage_int_SAM_5	PF13102.6	gi|345007403|ref|YP_004810255.1|	-	5.1e-07	29.9	0.0	2e-06	28.1	0.0	1.9	1	1	0	1	1	1	1	Phage	integrase	SAM-like	domain
Phage_int_SAM_1	PF02899.17	gi|345007403|ref|YP_004810255.1|	-	0.0016	18.7	0.2	0.12	12.7	0.0	3.2	4	0	0	4	4	4	1	Phage	integrase,	N-terminal	SAM-like	domain
Phage_integrase	PF00589.22	gi|345007403|ref|YP_004810255.1|	-	0.02	14.7	0.0	0.14	11.9	0.0	2.2	1	1	0	1	1	1	0	Phage	integrase	family
AAA_31	PF13614.6	gi|345007405|ref|YP_004810257.1|	-	1.1e-28	100.3	0.0	1.6e-28	99.8	0.0	1.1	1	0	0	1	1	1	1	AAA	domain
CbiA	PF01656.23	gi|345007405|ref|YP_004810257.1|	-	8.6e-11	42.0	0.0	1.8e-10	40.9	0.0	1.6	1	1	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
ParA	PF10609.9	gi|345007405|ref|YP_004810257.1|	-	2.6e-08	33.6	0.3	1.8e-07	30.9	0.1	1.9	2	0	0	2	2	2	1	NUBPL	iron-transfer	P-loop	NTPase
MipZ	PF09140.11	gi|345007405|ref|YP_004810257.1|	-	8.6e-07	28.5	0.3	7.5e-05	22.1	0.3	2.8	2	1	0	2	2	2	1	ATPase	MipZ
CBP_BcsQ	PF06564.12	gi|345007405|ref|YP_004810257.1|	-	2e-06	27.5	0.0	3.5e-06	26.7	0.0	1.3	1	0	0	1	1	1	1	Cellulose	biosynthesis	protein	BcsQ
ArsA_ATPase	PF02374.15	gi|345007405|ref|YP_004810257.1|	-	0.00014	21.2	0.0	0.0018	17.5	0.0	2.4	3	0	0	3	3	3	1	Anion-transporting	ATPase
VirC1	PF07015.11	gi|345007405|ref|YP_004810257.1|	-	0.0019	17.6	0.0	0.5	9.6	0.0	2.2	2	0	0	2	2	2	2	VirC1	protein
CLP1_P	PF16575.5	gi|345007405|ref|YP_004810257.1|	-	0.005	16.7	0.1	0.015	15.1	0.0	1.8	2	0	0	2	2	2	1	mRNA	cleavage	and	polyadenylation	factor	CLP1	P-loop
Fer4_NifH	PF00142.18	gi|345007405|ref|YP_004810257.1|	-	0.0096	15.4	0.0	0.31	10.4	0.0	2.3	2	0	0	2	2	2	1	4Fe-4S	iron	sulfur	cluster	binding	proteins,	NifH/frxC	family
APS_kinase	PF01583.20	gi|345007405|ref|YP_004810257.1|	-	0.0096	15.8	0.2	0.024	14.5	0.1	1.6	2	0	0	2	2	2	1	Adenylylsulphate	kinase
SRP54	PF00448.22	gi|345007405|ref|YP_004810257.1|	-	0.11	12.1	0.1	4.2	6.9	0.0	2.4	2	0	0	2	2	2	0	SRP54-type	protein,	GTPase	domain
HTH_23	PF13384.6	gi|345007407|ref|YP_004810259.1|	-	6.7e-06	25.7	0.3	2.8e-05	23.8	0.0	2.1	3	0	0	3	3	3	1	Homeodomain-like	domain
HTH_28	PF13518.6	gi|345007407|ref|YP_004810259.1|	-	8.7e-05	22.6	2.3	0.00011	22.3	0.0	2.3	2	1	1	3	3	2	1	Helix-turn-helix	domain
MarR_2	PF12802.7	gi|345007407|ref|YP_004810259.1|	-	0.00011	22.0	0.4	0.00026	20.8	0.3	1.7	1	1	1	2	2	2	1	MarR	family
HTH_1	PF00126.27	gi|345007407|ref|YP_004810259.1|	-	0.00061	19.7	0.5	0.0017	18.2	0.1	1.9	2	0	0	2	2	2	1	Bacterial	regulatory	helix-turn-helix	protein,	lysR	family
Fe_dep_repress	PF01325.19	gi|345007407|ref|YP_004810259.1|	-	0.0013	18.9	0.0	0.0099	16.1	0.0	2.2	2	0	0	2	2	2	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
Rrf2	PF02082.20	gi|345007407|ref|YP_004810259.1|	-	0.0057	17.0	0.0	0.063	13.6	0.0	2.3	2	0	0	2	2	2	1	Transcriptional	regulator
HTH_Crp_2	PF13545.6	gi|345007407|ref|YP_004810259.1|	-	0.0063	16.5	0.0	0.021	14.8	0.0	1.8	2	0	0	2	2	2	1	Crp-like	helix-turn-helix	domain
TrmB	PF01978.19	gi|345007407|ref|YP_004810259.1|	-	0.0077	16.1	0.0	0.014	15.3	0.0	1.4	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
GntR	PF00392.21	gi|345007407|ref|YP_004810259.1|	-	0.0084	15.7	0.1	0.035	13.8	0.0	2.0	2	0	0	2	2	2	1	Bacterial	regulatory	proteins,	gntR	family
HTH_30	PF13556.6	gi|345007407|ref|YP_004810259.1|	-	0.013	15.3	0.1	0.024	14.4	0.1	1.5	1	0	0	1	1	1	0	PucR	C-terminal	helix-turn-helix	domain
HTH_24	PF13412.6	gi|345007407|ref|YP_004810259.1|	-	0.013	15.0	0.0	0.027	14.0	0.0	1.5	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
RPA_C	PF08784.11	gi|345007407|ref|YP_004810259.1|	-	0.041	14.6	0.0	0.08	13.6	0.0	1.5	1	1	0	1	1	1	0	Replication	protein	A	C	terminal
HTH_Tnp_ISL3	PF13542.6	gi|345007407|ref|YP_004810259.1|	-	0.052	13.0	0.3	0.19	11.2	0.1	1.9	2	0	0	2	2	2	0	Helix-turn-helix	domain	of	transposase	family	ISL3
DUF2250	PF10007.9	gi|345007407|ref|YP_004810259.1|	-	0.061	13.4	0.0	0.11	12.7	0.0	1.3	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
HTH_IclR	PF09339.10	gi|345007407|ref|YP_004810259.1|	-	0.18	11.7	0.2	0.41	10.5	0.0	1.7	2	0	0	2	2	2	0	IclR	helix-turn-helix	domain
LPD11	PF18824.1	gi|345007407|ref|YP_004810259.1|	-	0.4	10.8	2.1	12	6.0	0.5	2.3	1	1	1	2	2	2	0	Large	polyvalent	protein-associated	domain	11
NTP_transf_5	PF14907.6	gi|345007408|ref|YP_004810260.1|	-	5.1e-08	32.9	0.1	7e-08	32.4	0.1	1.2	1	0	0	1	1	1	1	Uncharacterised	nucleotidyltransferase
AbiEii	PF08843.11	gi|345007408|ref|YP_004810260.1|	-	0.00063	19.8	0.2	0.0068	16.4	0.0	2.1	2	0	0	2	2	2	1	Nucleotidyl	transferase	AbiEii	toxin,	Type	IV	TA	system
Propep_M14	PF02244.16	gi|345007408|ref|YP_004810260.1|	-	0.009	16.4	0.0	0.031	14.7	0.0	1.9	2	0	0	2	2	2	1	Carboxypeptidase	activation	peptide
GrpB	PF04229.14	gi|345007408|ref|YP_004810260.1|	-	0.036	14.3	0.0	0.074	13.3	0.0	1.5	1	0	0	1	1	1	0	GrpB	protein
TRAM	PF01938.20	gi|345007410|ref|YP_004810262.1|	-	1.4e-15	57.0	1.3	2.1e-15	56.5	1.3	1.3	1	0	0	1	1	1	1	TRAM	domain
PIN	PF01850.21	gi|345007412|ref|YP_004810264.1|	-	0.00019	21.9	0.0	0.00075	20.0	0.0	1.9	2	0	0	2	2	2	1	PIN	domain
HTH_28	PF13518.6	gi|345007413|ref|YP_004810265.1|	-	0.077	13.1	0.0	0.31	11.2	0.0	2.1	2	0	0	2	2	2	0	Helix-turn-helix	domain
Nup54	PF13874.6	gi|345007413|ref|YP_004810265.1|	-	0.28	11.3	0.8	9.5	6.3	0.0	2.7	2	1	1	3	3	3	0	Nucleoporin	complex	subunit	54
DDE_Tnp_1	PF01609.21	gi|345007415|ref|YP_004810267.1|	-	6.9e-33	114.1	0.3	9e-33	113.7	0.3	1.2	1	0	0	1	1	1	1	Transposase	DDE	domain
DDE_Tnp_1_4	PF13701.6	gi|345007415|ref|YP_004810267.1|	-	0.0083	14.4	0.1	0.028	12.7	0.0	1.7	1	1	1	2	2	2	1	Transposase	DDE	domain	group	1
Corona_3	PF04694.12	gi|345007415|ref|YP_004810267.1|	-	0.043	14.2	0.0	0.11	12.9	0.0	1.6	1	0	0	1	1	1	0	Coronavirus	ORF3	protein
DDE_Tnp_1	PF01609.21	gi|345007416|ref|YP_004810268.1|	-	5.1e-14	52.4	6.6	4.9e-13	49.2	6.6	2.1	1	1	0	1	1	1	1	Transposase	DDE	domain
DDE_Tnp_1_3	PF13612.6	gi|345007416|ref|YP_004810268.1|	-	0.00021	21.4	0.2	0.00034	20.7	0.2	1.3	1	0	0	1	1	1	1	Transposase	DDE	domain
DUF772	PF05598.11	gi|345007416|ref|YP_004810268.1|	-	0.00045	20.2	0.1	0.0013	18.7	0.1	1.8	1	0	0	1	1	1	1	Transposase	domain	(DUF772)
DDE_Tnp_1_2	PF13586.6	gi|345007416|ref|YP_004810268.1|	-	0.0043	17.4	0.9	0.0081	16.5	0.3	1.8	2	0	0	2	2	2	1	Transposase	DDE	domain
TPR_11	PF13414.6	gi|345007417|ref|YP_004810269.1|	-	4.5e-07	29.5	2.2	0.0038	16.9	0.0	3.4	3	0	0	3	3	3	1	TPR	repeat
TPR_14	PF13428.6	gi|345007417|ref|YP_004810269.1|	-	7.3e-05	23.3	7.6	0.0035	18.0	0.0	4.6	3	1	1	4	4	4	2	Tetratricopeptide	repeat
TPR_16	PF13432.6	gi|345007417|ref|YP_004810269.1|	-	0.00018	22.1	2.3	0.0021	18.7	0.8	3.2	2	1	0	2	2	1	1	Tetratricopeptide	repeat
BTAD	PF03704.17	gi|345007417|ref|YP_004810269.1|	-	0.00054	20.4	1.3	0.09	13.2	0.5	3.3	2	1	1	3	3	3	1	Bacterial	transcriptional	activator	domain
TPR_6	PF13174.6	gi|345007417|ref|YP_004810269.1|	-	0.00065	20.2	1.1	0.71	10.6	0.0	3.3	3	0	0	3	3	3	1	Tetratricopeptide	repeat
TPR_2	PF07719.17	gi|345007417|ref|YP_004810269.1|	-	0.00088	19.2	5.9	1.1	9.5	0.0	4.0	4	0	0	4	4	4	1	Tetratricopeptide	repeat
zf-Di19	PF05605.12	gi|345007417|ref|YP_004810269.1|	-	0.0018	18.5	0.2	0.0042	17.3	0.2	1.6	1	0	0	1	1	1	1	Drought	induced	19	protein	(Di19),	zinc-binding
TPR_10	PF13374.6	gi|345007417|ref|YP_004810269.1|	-	0.0022	17.8	2.4	3.7	7.5	0.1	3.5	3	0	0	3	3	3	2	Tetratricopeptide	repeat
TPR_8	PF13181.6	gi|345007417|ref|YP_004810269.1|	-	0.0045	17.1	0.2	4.1	7.9	0.0	3.0	3	0	0	3	3	2	1	Tetratricopeptide	repeat
zf-C2H2	PF00096.26	gi|345007417|ref|YP_004810269.1|	-	0.0053	17.1	0.1	0.01	16.3	0.1	1.5	1	0	0	1	1	1	1	Zinc	finger,	C2H2	type
NARP1	PF12569.8	gi|345007417|ref|YP_004810269.1|	-	0.0054	15.7	0.0	0.01	14.8	0.0	1.3	1	0	0	1	1	1	1	NMDA	receptor-regulated	protein	1
zf-C2H2_4	PF13894.6	gi|345007417|ref|YP_004810269.1|	-	0.0054	17.5	0.1	0.014	16.2	0.1	1.7	1	0	0	1	1	1	1	C2H2-type	zinc	finger
TPR_12	PF13424.6	gi|345007417|ref|YP_004810269.1|	-	0.0067	16.7	2.6	0.029	14.7	0.6	3.1	2	1	1	3	3	3	1	Tetratricopeptide	repeat
TPR_19	PF14559.6	gi|345007417|ref|YP_004810269.1|	-	0.0079	16.7	1.0	1.1	9.9	0.0	3.1	3	0	0	3	3	2	1	Tetratricopeptide	repeat
SHNi-TPR	PF10516.9	gi|345007417|ref|YP_004810269.1|	-	0.028	13.9	0.3	0.56	9.7	0.2	2.7	2	0	0	2	2	2	0	SHNi-TPR
Toxin_25	PF08095.11	gi|345007417|ref|YP_004810269.1|	-	0.034	14.1	0.6	2.7	8.0	0.1	2.5	2	0	0	2	2	2	0	Hefutoxin	family
Porphobil_deam	PF01379.20	gi|345007417|ref|YP_004810269.1|	-	0.047	13.2	0.4	0.071	12.6	0.4	1.2	1	0	0	1	1	1	0	Porphobilinogen	deaminase,	dipyromethane	cofactor	binding	domain
zf-C2H2_9	PF16293.5	gi|345007417|ref|YP_004810269.1|	-	0.049	13.5	1.1	0.096	12.5	0.0	2.1	3	0	0	3	3	2	0	C2H2	type	zinc-finger	(1	copy)
zf-C2H2_jaz	PF12171.8	gi|345007417|ref|YP_004810269.1|	-	0.057	13.7	0.0	0.12	12.7	0.0	1.5	1	0	0	1	1	1	0	Zinc-finger	double-stranded	RNA-binding
FOXP-CC	PF16159.5	gi|345007417|ref|YP_004810269.1|	-	0.06	14.0	0.9	0.38	11.4	0.1	2.8	4	0	0	4	4	3	0	FOXP	coiled-coil	domain
zf-C2HC_2	PF13913.6	gi|345007417|ref|YP_004810269.1|	-	0.073	13.0	0.1	0.17	11.9	0.1	1.5	1	0	0	1	1	1	0	zinc-finger	of	a	C2HC-type
LEM	PF03020.15	gi|345007417|ref|YP_004810269.1|	-	0.13	11.8	0.0	0.33	10.5	0.0	1.7	1	0	0	1	1	1	0	LEM	domain
TPR_7	PF13176.6	gi|345007417|ref|YP_004810269.1|	-	0.31	11.1	3.2	1.8	8.8	0.4	3.4	3	1	0	3	3	2	0	Tetratricopeptide	repeat
Calci_bind_CcbP	PF11535.8	gi|345007418|ref|YP_004810270.1|	-	1.8e-42	144.1	0.5	2.1e-42	143.9	0.5	1.0	1	0	0	1	1	1	1	Calcium	binding
ResIII	PF04851.15	gi|345007419|ref|YP_004810271.1|	-	3.2e-23	82.6	0.0	1.2e-22	80.7	0.0	1.9	2	0	0	2	2	2	1	Type	III	restriction	enzyme,	res	subunit
ERCC3_RAD25_C	PF16203.5	gi|345007419|ref|YP_004810271.1|	-	1.2e-22	80.3	0.3	1.9e-22	79.7	0.3	1.2	1	0	0	1	1	1	1	ERCC3/RAD25/XPB	C-terminal	helicase
Helicase_C	PF00271.31	gi|345007419|ref|YP_004810271.1|	-	1.6e-17	63.9	0.1	1.6e-17	63.9	0.1	2.1	3	0	0	3	3	3	1	Helicase	conserved	C-terminal	domain
XPB_DRD	PF18458.1	gi|345007419|ref|YP_004810271.1|	-	3.4e-12	46.1	1.7	1.7e-11	43.8	1.7	2.3	1	0	0	1	1	1	1	Xeroderma	pigmentosum	group	B	helicase	damage	recognition	domain
DEAD	PF00270.29	gi|345007419|ref|YP_004810271.1|	-	3.3e-08	33.5	0.0	7.6e-08	32.3	0.0	1.6	1	0	0	1	1	1	1	DEAD/DEAH	box	helicase
IstB_IS21	PF01695.17	gi|345007419|ref|YP_004810271.1|	-	0.019	14.7	0.0	0.12	12.1	0.0	2.2	2	0	0	2	2	2	0	IstB-like	ATP	binding	protein
Helicase_C_2	PF13307.6	gi|345007419|ref|YP_004810271.1|	-	0.17	12.1	0.3	5.1	7.2	0.0	2.7	2	1	1	3	3	3	0	Helicase	C-terminal	domain
DUF790	PF05626.11	gi|345007420|ref|YP_004810272.1|	-	1.6e-137	458.4	0.0	1.9e-137	458.2	0.0	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF790)
HTH_23	PF13384.6	gi|345007421|ref|YP_004810273.1|	-	8.8e-05	22.2	0.0	0.00033	20.3	0.0	2.0	1	0	0	1	1	1	1	Homeodomain-like	domain
MarR_2	PF12802.7	gi|345007421|ref|YP_004810273.1|	-	0.00012	21.8	0.1	0.00032	20.5	0.1	1.7	1	1	0	1	1	1	1	MarR	family
GntR	PF00392.21	gi|345007421|ref|YP_004810273.1|	-	0.0032	17.1	0.0	0.048	13.3	0.0	2.3	2	0	0	2	2	2	1	Bacterial	regulatory	proteins,	gntR	family
HTH_1	PF00126.27	gi|345007421|ref|YP_004810273.1|	-	0.0039	17.1	0.2	0.015	15.2	0.0	1.9	2	0	0	2	2	2	1	Bacterial	regulatory	helix-turn-helix	protein,	lysR	family
Rrf2	PF02082.20	gi|345007421|ref|YP_004810273.1|	-	0.0043	17.4	0.0	0.11	12.9	0.0	2.4	2	0	0	2	2	2	1	Transcriptional	regulator
HTH_28	PF13518.6	gi|345007421|ref|YP_004810273.1|	-	0.0044	17.1	1.6	0.0087	16.2	0.0	2.3	3	0	0	3	3	3	1	Helix-turn-helix	domain
Fe_dep_repress	PF01325.19	gi|345007421|ref|YP_004810273.1|	-	0.005	17.0	0.0	0.022	14.9	0.0	2.0	2	0	0	2	2	2	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
TrmB	PF01978.19	gi|345007421|ref|YP_004810273.1|	-	0.015	15.2	0.0	0.029	14.3	0.0	1.4	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
RPA_C	PF08784.11	gi|345007421|ref|YP_004810273.1|	-	0.02	15.6	0.0	0.036	14.7	0.0	1.5	1	0	0	1	1	1	0	Replication	protein	A	C	terminal
DUF2250	PF10007.9	gi|345007421|ref|YP_004810273.1|	-	0.028	14.5	0.0	0.046	13.8	0.0	1.3	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
HTH_Crp_2	PF13545.6	gi|345007421|ref|YP_004810273.1|	-	0.039	13.9	0.0	0.12	12.4	0.0	1.8	2	0	0	2	2	2	0	Crp-like	helix-turn-helix	domain
HTH_24	PF13412.6	gi|345007421|ref|YP_004810273.1|	-	0.05	13.2	0.0	0.09	12.4	0.0	1.4	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
LPD11	PF18824.1	gi|345007421|ref|YP_004810273.1|	-	0.5	10.5	2.2	18	5.5	0.4	2.3	1	1	1	2	2	2	0	Large	polyvalent	protein-associated	domain	11
LVIVD	PF08309.11	gi|345007422|ref|YP_004810274.1|	-	0.13	11.6	0.3	0.26	10.7	0.3	1.5	1	0	0	1	1	1	0	LVIVD	repeat
CorA	PF01544.18	gi|345007425|ref|YP_004810277.1|	-	0.021	14.1	1.6	0.024	14.0	1.6	1.0	1	0	0	1	1	1	0	CorA-like	Mg2+	transporter	protein
XhlA	PF10779.9	gi|345007425|ref|YP_004810277.1|	-	0.063	13.5	0.1	0.53	10.5	0.2	2.0	2	0	0	2	2	2	0	Haemolysin	XhlA
APH	PF01636.23	gi|345007425|ref|YP_004810277.1|	-	0.066	13.1	3.2	0.075	12.9	3.2	1.1	1	0	0	1	1	1	0	Phosphotransferase	enzyme	family
PSK_trans_fac	PF07704.11	gi|345007425|ref|YP_004810277.1|	-	0.23	12.3	2.8	0.48	11.2	2.8	1.7	1	1	0	1	1	1	0	Rv0623-like	transcription	factor
DDE_Tnp_1	PF01609.21	gi|345007426|ref|YP_004810278.1|	-	2.1e-29	102.7	0.2	2.6e-29	102.4	0.2	1.1	1	0	0	1	1	1	1	Transposase	DDE	domain
Corona_3	PF04694.12	gi|345007426|ref|YP_004810278.1|	-	0.0036	17.6	0.1	0.0096	16.2	0.1	1.7	1	0	0	1	1	1	1	Coronavirus	ORF3	protein
MarR_2	PF12802.7	gi|345007427|ref|YP_004810279.1|	-	0.00015	21.5	0.0	0.00029	20.6	0.0	1.4	1	0	0	1	1	1	1	MarR	family
HTH_20	PF12840.7	gi|345007427|ref|YP_004810279.1|	-	0.00055	20.0	0.0	0.00093	19.2	0.0	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
TrmB	PF01978.19	gi|345007427|ref|YP_004810279.1|	-	0.0063	16.4	0.0	0.012	15.5	0.0	1.4	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_5	PF01022.20	gi|345007427|ref|YP_004810279.1|	-	0.062	13.2	0.0	0.1	12.4	0.0	1.3	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
HTH_43	PF09904.9	gi|345007427|ref|YP_004810279.1|	-	0.064	13.2	0.0	0.15	12.1	0.0	1.6	1	0	0	1	1	1	0	Winged	helix-turn	helix
MarR	PF01047.22	gi|345007427|ref|YP_004810279.1|	-	0.18	11.8	0.0	0.38	10.7	0.0	1.5	1	0	0	1	1	1	0	MarR	family
Insulin_TMD	PF17870.1	gi|345007429|ref|YP_004810281.1|	-	0.0041	17.2	0.5	0.43	10.7	0.1	2.3	2	0	0	2	2	2	2	Insulin	receptor	trans-membrane	segment
NADHdh-2_N	PF12155.8	gi|345007429|ref|YP_004810281.1|	-	0.08	13.3	2.8	0.09	13.2	2.6	1.4	1	1	0	1	1	1	0	NADH	dehydrogenase	subunit	2	N-terminal
HRG	PF16954.5	gi|345007429|ref|YP_004810281.1|	-	0.18	12.2	0.2	0.18	12.2	0.2	2.6	4	0	0	4	4	4	0	Haem-transporter,	endosomal/lysosomal,	haem-responsive	gene
DDE_Tnp_1	PF01609.21	gi|345007430|ref|YP_004810282.1|	-	5.2e-13	49.1	4.1	4.1e-12	46.2	4.1	2.0	1	1	0	1	1	1	1	Transposase	DDE	domain
DUF772	PF05598.11	gi|345007430|ref|YP_004810282.1|	-	2.1e-05	24.4	0.0	6e-05	23.0	0.0	1.8	1	0	0	1	1	1	1	Transposase	domain	(DUF772)
DDE_Tnp_1	PF01609.21	gi|345007433|ref|YP_004810285.1|	-	0.0003	20.5	0.5	0.0026	17.4	0.5	2.3	1	1	0	1	1	1	1	Transposase	DDE	domain
DUF772	PF05598.11	gi|345007433|ref|YP_004810285.1|	-	0.14	12.2	2.0	0.23	11.5	0.0	2.3	3	0	0	3	3	3	0	Transposase	domain	(DUF772)
Phage_int_SAM_5	PF13102.6	gi|345007434|ref|YP_004810286.1|	-	3.9e-09	36.8	0.0	6.9e-09	35.9	0.0	1.4	1	0	0	1	1	1	1	Phage	integrase	SAM-like	domain
Phage_integrase	PF00589.22	gi|345007434|ref|YP_004810286.1|	-	6.1e-07	29.4	0.0	0.00076	19.3	0.0	3.6	2	1	0	2	2	2	1	Phage	integrase	family
Phage_int_SAM_4	PF13495.6	gi|345007434|ref|YP_004810286.1|	-	0.0022	18.4	0.0	0.034	14.6	0.0	2.3	2	0	0	2	2	2	1	Phage	integrase,	N-terminal	SAM-like	domain
Phage_int_SAM_1	PF02899.17	gi|345007434|ref|YP_004810286.1|	-	0.0077	16.5	0.0	0.052	13.9	0.0	2.3	2	0	0	2	2	2	1	Phage	integrase,	N-terminal	SAM-like	domain
DUF5618	PF18498.1	gi|345007434|ref|YP_004810286.1|	-	0.023	14.9	0.1	11	6.2	0.0	2.7	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF5618)
Inhibitor_I10	PF12559.8	gi|345007434|ref|YP_004810286.1|	-	0.085	13.1	0.7	45	4.4	0.0	3.6	3	0	0	3	3	3	0	Serine	endopeptidase	inhibitors
Trypan_PARP	PF05887.11	gi|345007435|ref|YP_004810287.1|	-	0.0014	18.6	10.1	0.0021	18.0	10.1	1.2	1	0	0	1	1	1	1	Procyclic	acidic	repetitive	protein	(PARP)
NESP55	PF06390.12	gi|345007435|ref|YP_004810287.1|	-	0.0039	16.8	6.2	0.0047	16.6	6.2	1.1	1	0	0	1	1	1	1	Neuroendocrine-specific	golgi	protein	P55	(NESP55)
Flavodoxin_5	PF12724.7	gi|345007435|ref|YP_004810287.1|	-	0.13	12.5	0.0	0.43	10.8	0.0	1.8	2	0	0	2	2	2	0	Flavodoxin	domain
CAF1A	PF12253.8	gi|345007435|ref|YP_004810287.1|	-	6.9	6.9	13.9	5	7.4	11.6	1.9	1	1	1	2	2	2	0	Chromatin	assembly	factor	1	subunit	A
AAA_31	PF13614.6	gi|345007436|ref|YP_004810288.1|	-	4.1e-20	72.4	0.0	7e-20	71.7	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
CbiA	PF01656.23	gi|345007436|ref|YP_004810288.1|	-	2.1e-13	50.4	0.0	3.3e-13	49.8	0.0	1.3	1	0	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
ArsA_ATPase	PF02374.15	gi|345007436|ref|YP_004810288.1|	-	0.00017	20.9	0.0	0.0016	17.7	0.0	2.1	2	0	0	2	2	2	1	Anion-transporting	ATPase
ParA	PF10609.9	gi|345007436|ref|YP_004810288.1|	-	0.00018	21.0	0.0	0.00032	20.2	0.0	1.3	1	0	0	1	1	1	1	NUBPL	iron-transfer	P-loop	NTPase
MipZ	PF09140.11	gi|345007436|ref|YP_004810288.1|	-	0.0013	18.1	0.0	0.094	12.0	0.0	2.1	2	0	0	2	2	2	1	ATPase	MipZ
Ferritin	PF00210.24	gi|345007436|ref|YP_004810288.1|	-	0.018	15.0	0.1	0.043	13.8	0.1	1.5	1	0	0	1	1	1	0	Ferritin-like	domain
CBP_BcsQ	PF06564.12	gi|345007436|ref|YP_004810288.1|	-	0.06	12.8	0.1	0.14	11.7	0.1	1.6	1	1	0	1	1	1	0	Cellulose	biosynthesis	protein	BcsQ
SRP54	PF00448.22	gi|345007436|ref|YP_004810288.1|	-	0.1	12.2	0.1	1.6	8.3	0.0	2.5	3	0	0	3	3	3	0	SRP54-type	protein,	GTPase	domain
Metallophos_2	PF12850.7	gi|345007438|ref|YP_004810290.1|	-	3.9e-10	40.2	0.0	6.3e-10	39.5	0.0	1.3	1	0	0	1	1	1	1	Calcineurin-like	phosphoesterase	superfamily	domain
Metallophos	PF00149.28	gi|345007438|ref|YP_004810290.1|	-	5.3e-07	30.3	1.0	1.1e-06	29.3	1.0	1.6	1	1	0	1	1	1	1	Calcineurin-like	phosphoesterase
Metallophos_3	PF14582.6	gi|345007438|ref|YP_004810290.1|	-	0.0017	17.7	0.0	0.0025	17.2	0.0	1.2	1	0	0	1	1	1	1	Metallophosphoesterase,	calcineurin	superfamily
Rad51	PF08423.11	gi|345007439|ref|YP_004810291.1|	-	6.8e-49	166.4	1.1	2.8e-47	161.1	1.1	2.6	1	1	0	1	1	1	1	Rad51
HHH_5	PF14520.6	gi|345007439|ref|YP_004810291.1|	-	2.8e-07	31.1	0.0	7.1e-07	29.7	0.0	1.7	1	0	0	1	1	1	1	Helix-hairpin-helix	domain
RecA	PF00154.21	gi|345007439|ref|YP_004810291.1|	-	5.4e-06	26.1	0.1	2.5e-05	23.9	0.0	1.9	2	0	0	2	2	2	1	recA	bacterial	DNA	recombination	protein
AAA_25	PF13481.6	gi|345007439|ref|YP_004810291.1|	-	0.00018	21.1	0.1	0.00045	19.8	0.1	1.6	1	1	0	1	1	1	1	AAA	domain
ATPase	PF06745.13	gi|345007439|ref|YP_004810291.1|	-	0.00021	20.7	0.8	0.0016	17.8	0.8	2.1	1	1	0	1	1	1	1	KaiC
Cdd1	PF11731.8	gi|345007439|ref|YP_004810291.1|	-	0.0016	18.6	0.0	0.0031	17.7	0.0	1.5	1	0	0	1	1	1	1	Pathogenicity	locus
ATPase_2	PF01637.18	gi|345007439|ref|YP_004810291.1|	-	0.042	13.8	0.0	0.063	13.2	0.0	1.3	1	0	0	1	1	1	0	ATPase	domain	predominantly	from	Archaea
HHH_2	PF12826.7	gi|345007439|ref|YP_004810291.1|	-	0.059	13.5	0.0	0.21	11.7	0.0	2.0	1	1	0	1	1	1	0	Helix-hairpin-helix	motif
Zn_ribbon_recom	PF13408.6	gi|345007440|ref|YP_004810292.1|	-	0.0002	21.8	2.1	0.018	15.5	0.3	2.9	2	0	0	2	2	2	1	Recombinase	zinc	beta	ribbon	domain
CoiA	PF06054.11	gi|345007440|ref|YP_004810292.1|	-	0.00022	20.5	0.0	0.00036	19.8	0.0	1.2	1	0	0	1	1	1	1	Competence	protein	CoiA-like	family
Zn-ribbon_8	PF09723.10	gi|345007440|ref|YP_004810292.1|	-	0.016	15.3	3.1	4.3	7.5	0.1	3.1	3	0	0	3	3	3	0	Zinc	ribbon	domain
DNA_ligase_ZBD	PF03119.16	gi|345007440|ref|YP_004810292.1|	-	0.024	14.7	3.8	0.4	10.7	0.4	3.3	2	0	0	2	2	2	0	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
TF_Zn_Ribbon	PF08271.12	gi|345007440|ref|YP_004810292.1|	-	0.041	13.4	5.9	0.4	10.2	0.9	2.7	2	0	0	2	2	2	0	TFIIB	zinc-binding
Prok-RING_1	PF14446.6	gi|345007440|ref|YP_004810292.1|	-	0.053	13.4	1.6	4.9	7.2	0.1	2.7	2	0	0	2	2	2	0	Prokaryotic	RING	finger	family	1
Nudix_N_2	PF14803.6	gi|345007440|ref|YP_004810292.1|	-	0.057	13.3	0.6	7	6.7	0.1	2.9	2	0	0	2	2	2	0	Nudix	N-terminal
DZR	PF12773.7	gi|345007440|ref|YP_004810292.1|	-	0.059	13.4	4.3	1.4	9.0	0.2	3.1	3	0	0	3	3	3	0	Double	zinc	ribbon
Ogr_Delta	PF04606.12	gi|345007440|ref|YP_004810292.1|	-	0.082	12.9	6.4	3.3	7.8	0.4	3.2	2	1	1	3	3	3	0	Ogr/Delta-like	zinc	finger
RNA_POL_M_15KD	PF02150.16	gi|345007440|ref|YP_004810292.1|	-	0.086	12.7	0.2	15	5.5	0.2	2.8	2	0	0	2	2	2	0	RNA	polymerases	M/15	Kd	subunit
zf-C2H2_4	PF13894.6	gi|345007440|ref|YP_004810292.1|	-	0.15	13.0	4.5	6.4	7.9	0.1	3.7	3	0	0	3	3	3	0	C2H2-type	zinc	finger
zf-IS66	PF13005.7	gi|345007440|ref|YP_004810292.1|	-	0.16	12.4	2.4	7.6	7.0	0.0	3.1	3	0	0	3	3	3	0	zinc-finger	binding	domain	of	transposase	IS66
zf-ribbon_3	PF13248.6	gi|345007440|ref|YP_004810292.1|	-	0.23	10.9	6.2	2.8	7.5	0.8	3.2	2	1	0	2	2	2	0	zinc-ribbon	domain
zf-C4_Topoisom	PF01396.19	gi|345007440|ref|YP_004810292.1|	-	0.26	11.1	6.6	3.2	7.6	0.0	3.1	4	0	0	4	4	3	0	Topoisomerase	DNA	binding	C4	zinc	finger
zf-NADH-PPase	PF09297.11	gi|345007440|ref|YP_004810292.1|	-	0.34	10.6	4.0	3.2	7.5	0.1	3.0	2	0	0	2	2	2	0	NADH	pyrophosphatase	zinc	ribbon	domain
zf-TFIIB	PF13453.6	gi|345007440|ref|YP_004810292.1|	-	0.44	9.9	5.9	1.3	8.5	0.2	3.1	3	0	0	3	3	3	0	Transcription	factor	zinc-finger
DUF4572	PF15139.6	gi|345007442|ref|YP_004810294.1|	-	0.0023	17.9	0.1	0.0036	17.3	0.1	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4572)
DUF202	PF02656.15	gi|345007442|ref|YP_004810294.1|	-	0.0026	18.1	1.1	0.32	11.5	0.4	2.2	2	0	0	2	2	2	2	Domain	of	unknown	function	(DUF202)
DUF2892	PF11127.8	gi|345007442|ref|YP_004810294.1|	-	0.12	12.4	0.7	2.5	8.2	0.2	2.2	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2892)
DUF3185	PF11381.8	gi|345007442|ref|YP_004810294.1|	-	6	7.0	8.3	9.2	6.4	5.3	2.3	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3185)
HEPN_Apea	PF18739.1	gi|345007443|ref|YP_004810295.1|	-	0.011	16.1	0.0	0.017	15.6	0.0	1.4	1	1	0	1	1	1	0	Apea-like	HEPN
DDE_Tnp_1	PF01609.21	gi|345007444|ref|YP_004810296.1|	-	0.031	13.9	0.1	0.085	12.5	0.1	1.7	1	1	0	1	1	1	0	Transposase	DDE	domain
FlaC_arch	PF05377.11	gi|345007446|ref|YP_004810298.1|	-	0.13	12.7	0.1	1.5	9.3	0.1	2.2	1	1	1	2	2	2	0	Flagella	accessory	protein	C	(FlaC)
TF_Zn_Ribbon	PF08271.12	gi|345007447|ref|YP_004810299.1|	-	0.13	11.8	0.5	0.31	10.6	0.1	1.8	2	0	0	2	2	2	0	TFIIB	zinc-binding
HEPN_Apea	PF18739.1	gi|345007448|ref|YP_004810300.1|	-	0.0012	19.2	0.4	0.0026	18.2	0.4	1.5	1	0	0	1	1	1	1	Apea-like	HEPN
Phage_integrase	PF00589.22	gi|345007449|ref|YP_004810301.1|	-	3.9e-16	59.3	2.3	1.9e-12	47.3	1.6	2.2	2	0	0	2	2	2	2	Phage	integrase	family
MBT	PF02820.18	gi|345007449|ref|YP_004810301.1|	-	0.13	12.6	0.0	0.39	11.1	0.0	1.9	1	0	0	1	1	1	0	mbt	repeat
PLU-1	PF08429.11	gi|345007450|ref|YP_004810302.1|	-	0.012	14.8	0.1	0.026	13.7	0.1	1.5	1	1	0	1	1	1	0	PLU-1-like	protein
Orthopox_F14	PF06076.12	gi|345007450|ref|YP_004810302.1|	-	0.1	12.9	3.3	0.15	12.4	0.7	2.3	2	1	0	2	2	2	0	Orthopoxvirus	F14	protein
DUF713	PF05218.14	gi|345007450|ref|YP_004810302.1|	-	0.11	12.3	2.2	1.1	8.9	2.2	2.0	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF713)
7TMR-HDED	PF07697.11	gi|345007450|ref|YP_004810302.1|	-	0.11	12.5	1.9	0.14	12.3	0.3	1.7	1	1	1	2	2	2	0	7TM-HD	extracellular
DNA_ligase_ZBD	PF03119.16	gi|345007451|ref|YP_004810303.1|	-	0.0019	18.2	0.7	1.6	8.9	0.1	2.8	2	1	0	2	2	2	2	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
Prok-RING_4	PF14447.6	gi|345007451|ref|YP_004810303.1|	-	0.013	15.4	0.9	4.7	7.1	0.1	2.4	2	0	0	2	2	2	0	Prokaryotic	RING	finger	family	4
zf-C2H2_9	PF16293.5	gi|345007451|ref|YP_004810303.1|	-	0.027	14.3	0.6	2.6	7.9	0.1	2.4	2	0	0	2	2	2	0	C2H2	type	zinc-finger	(1	copy)
zf-RRN7	PF11781.8	gi|345007451|ref|YP_004810303.1|	-	0.031	14.0	1.5	3.9	7.2	0.1	2.4	2	0	0	2	2	2	0	Zinc-finger	of	RNA-polymerase	I-specific	TFIIB,	Rrn7
Prok-RING_1	PF14446.6	gi|345007451|ref|YP_004810303.1|	-	0.042	13.8	0.7	0.78	9.7	0.1	2.3	2	0	0	2	2	2	0	Prokaryotic	RING	finger	family	1
zf-C3HC4_3	PF13920.6	gi|345007451|ref|YP_004810303.1|	-	0.042	13.7	3.1	0.85	9.5	0.3	2.3	2	0	0	2	2	2	0	Zinc	finger,	C3HC4	type	(RING	finger)
Zn_Tnp_IS1595	PF12760.7	gi|345007451|ref|YP_004810303.1|	-	0.043	13.8	3.5	0.96	9.5	0.2	2.3	1	1	1	2	2	2	0	Transposase	zinc-ribbon	domain
zf-Di19	PF05605.12	gi|345007451|ref|YP_004810303.1|	-	0.12	12.7	2.3	16	5.9	2.3	2.3	1	1	1	2	2	2	0	Drought	induced	19	protein	(Di19),	zinc-binding
Cys_rich_KTR	PF14205.6	gi|345007451|ref|YP_004810303.1|	-	0.29	11.0	2.0	13	5.6	0.2	2.5	2	0	0	2	2	2	0	Cysteine-rich	KTR
Rad50_zn_hook	PF04423.14	gi|345007451|ref|YP_004810303.1|	-	0.73	9.7	5.9	11	5.9	0.0	2.9	3	0	0	3	3	3	0	Rad50	zinc	hook	motif
HTH_24	PF13412.6	gi|345007452|ref|YP_004810304.1|	-	1.6e-11	43.6	0.1	0.00022	20.7	0.0	3.2	4	0	0	4	4	4	2	Winged	helix-turn-helix	DNA-binding
HTH_AsnC-type	PF13404.6	gi|345007452|ref|YP_004810304.1|	-	1.9e-07	30.8	0.1	0.0023	17.7	0.0	2.9	3	0	0	3	3	2	2	AsnC-type	helix-turn-helix	domain
Rit1_C	PF17184.4	gi|345007452|ref|YP_004810304.1|	-	0.0017	17.9	0.8	0.0035	16.9	0.0	1.8	2	1	0	2	2	2	1	Rit1	N-terminal	domain
TipAS	PF07739.13	gi|345007452|ref|YP_004810304.1|	-	0.01	16.4	8.1	1.5	9.4	0.1	3.6	3	1	1	4	4	4	0	TipAS	antibiotic-recognition	domain
MarR	PF01047.22	gi|345007452|ref|YP_004810304.1|	-	0.011	15.6	0.0	4.6	7.2	0.0	3.3	3	0	0	3	3	3	0	MarR	family
Phasin_2	PF09361.10	gi|345007452|ref|YP_004810304.1|	-	0.012	15.9	1.9	4.7	7.5	0.0	3.2	2	1	1	3	3	3	0	Phasin	protein
HTH_5	PF01022.20	gi|345007452|ref|YP_004810304.1|	-	0.014	15.3	0.2	3.2	7.7	0.0	3.0	3	0	0	3	3	3	0	Bacterial	regulatory	protein,	arsR	family
HTH_Tnp_Tc3_2	PF01498.18	gi|345007452|ref|YP_004810304.1|	-	0.019	15.2	0.7	17	5.7	0.0	4.2	5	0	0	5	5	5	0	Transposase
LexA_DNA_bind	PF01726.16	gi|345007452|ref|YP_004810304.1|	-	0.031	14.0	0.0	0.73	9.7	0.0	3.0	2	0	0	2	2	2	0	LexA	DNA	binding	domain
DHC	PF09626.10	gi|345007452|ref|YP_004810304.1|	-	0.076	13.9	5.2	17	6.3	0.0	4.0	2	1	2	4	4	4	0	Dihaem	cytochrome	c
HTH_23	PF13384.6	gi|345007452|ref|YP_004810304.1|	-	0.14	12.0	0.0	27	4.7	0.0	3.0	3	0	0	3	3	3	0	Homeodomain-like	domain
Carbpep_Y_N	PF05388.11	gi|345007452|ref|YP_004810304.1|	-	0.6	10.6	0.0	0.6	10.6	0.0	2.9	2	1	0	3	3	3	0	Carboxypeptidase	Y	pro-peptide
POTRA	PF07244.15	gi|345007452|ref|YP_004810304.1|	-	1.2	9.8	4.4	51	4.5	0.0	4.1	4	1	0	4	4	4	0	Surface	antigen	variable	number	repeat
Tn7_Tnp_TnsA_C	PF08721.11	gi|345007452|ref|YP_004810304.1|	-	3.2	8.5	8.6	29	5.4	0.1	4.5	4	1	1	5	5	5	0	TnsA	endonuclease	C	terminal
DUF4162	PF13732.6	gi|345007452|ref|YP_004810304.1|	-	5.5	7.8	9.5	0.31	11.8	1.9	2.9	3	1	2	5	5	4	0	Domain	of	unknown	function	(DUF4162)
DUF790	PF05626.11	gi|345007453|ref|YP_004810305.1|	-	4.3e-142	473.4	0.0	4.9e-142	473.2	0.0	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF790)
DUF569	PF04601.13	gi|345007453|ref|YP_004810305.1|	-	0.07	12.8	0.2	0.29	10.8	0.0	2.1	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF569)
ERCC3_RAD25_C	PF16203.5	gi|345007454|ref|YP_004810306.1|	-	3.9e-24	85.2	0.2	6.1e-24	84.6	0.2	1.2	1	0	0	1	1	1	1	ERCC3/RAD25/XPB	C-terminal	helicase
Helicase_C	PF00271.31	gi|345007454|ref|YP_004810306.1|	-	3.2e-17	62.9	0.1	7.1e-17	61.8	0.1	1.6	1	0	0	1	1	1	1	Helicase	conserved	C-terminal	domain
ResIII	PF04851.15	gi|345007454|ref|YP_004810306.1|	-	8.5e-10	38.9	0.0	6.8e-09	35.9	0.0	2.1	2	0	0	2	2	2	1	Type	III	restriction	enzyme,	res	subunit
Helicase_C_2	PF13307.6	gi|345007454|ref|YP_004810306.1|	-	0.07	13.3	0.4	2.4	8.3	0.0	2.7	1	1	1	2	2	2	0	Helicase	C-terminal	domain
DEAD	PF00270.29	gi|345007454|ref|YP_004810306.1|	-	0.1	12.4	0.0	0.22	11.3	0.0	1.6	1	0	0	1	1	1	0	DEAD/DEAH	box	helicase
TaqI_C	PF12950.7	gi|345133532|ref|YP_004821323.1|	-	9.2e-08	32.2	0.0	1.4e-07	31.6	0.0	1.2	1	0	0	1	1	1	1	TaqI-like	C-terminal	specificity	domain
Eco57I	PF07669.11	gi|345133532|ref|YP_004821323.1|	-	7.6e-07	29.6	0.0	1.3e-06	28.9	0.0	1.3	1	0	0	1	1	1	1	Eco57I	restriction-modification	methylase
N6_Mtase	PF02384.16	gi|345133532|ref|YP_004821323.1|	-	0.0017	17.7	0.0	0.0069	15.7	0.0	1.8	1	1	0	1	1	1	1	N-6	DNA	Methylase
MTS	PF05175.14	gi|345133532|ref|YP_004821323.1|	-	0.11	12.0	0.0	3.1	7.3	0.0	2.1	2	0	0	2	2	2	0	Methyltransferase	small	domain
MarR_2	PF12802.7	gi|345133533|ref|YP_004821324.1|	-	0.0012	18.7	0.3	0.011	15.6	0.1	2.2	2	0	0	2	2	2	1	MarR	family
TrmB	PF01978.19	gi|345133533|ref|YP_004821324.1|	-	0.0014	18.5	0.0	0.024	14.5	0.0	2.4	2	0	0	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_24	PF13412.6	gi|345133533|ref|YP_004821324.1|	-	0.019	14.5	0.0	0.25	10.9	0.1	2.1	2	0	0	2	2	2	0	Winged	helix-turn-helix	DNA-binding
HTH_20	PF12840.7	gi|345133533|ref|YP_004821324.1|	-	0.023	14.8	0.0	0.054	13.6	0.0	1.6	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_11	PF08279.12	gi|345133533|ref|YP_004821324.1|	-	0.051	13.5	0.1	0.094	12.7	0.1	1.3	1	0	0	1	1	1	0	HTH	domain
HTH_AsnC-type	PF13404.6	gi|345133533|ref|YP_004821324.1|	-	0.054	13.3	0.6	0.33	10.8	0.7	2.1	2	0	0	2	2	2	0	AsnC-type	helix-turn-helix	domain
Sigma70_r1_1	PF03979.14	gi|345133538|ref|YP_004821329.1|	-	0.056	13.5	0.1	0.08	13.0	0.1	1.2	1	0	0	1	1	1	0	Sigma-70	factor,	region	1.1
HicA_toxin	PF07927.12	gi|345133539|ref|YP_004821330.1|	-	1.5e-12	47.3	0.0	1.8e-12	47.1	0.0	1.1	1	0	0	1	1	1	1	HicA	toxin	of	bacterial	toxin-antitoxin,
CD36	PF01130.21	gi|345133542|ref|YP_004821333.1|	-	0.18	10.3	0.0	0.28	9.7	0.0	1.1	1	0	0	1	1	1	0	CD36	family
DUF3324	PF11797.8	gi|345133543|ref|YP_004821334.1|	-	0.13	12.3	0.0	0.18	11.8	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	C-terminal	(DUF3324)
DUF3659	PF12396.8	gi|345133543|ref|YP_004821334.1|	-	0.13	12.2	0.8	0.38	10.7	0.1	2.1	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF3659)
zf-LSD1	PF06943.12	gi|345133544|ref|YP_004821335.1|	-	0.1	12.5	0.8	0.16	11.8	0.8	1.3	1	0	0	1	1	1	0	LSD1	zinc	finger
Crp	PF00325.20	gi|345133545|ref|YP_004821336.1|	-	0.00074	19.1	0.1	0.0017	18.0	0.1	1.6	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	crp	family
HTH_Crp_2	PF13545.6	gi|345133545|ref|YP_004821336.1|	-	0.002	18.1	0.0	0.0043	17.0	0.0	1.5	1	0	0	1	1	1	1	Crp-like	helix-turn-helix	domain
HTH_11	PF08279.12	gi|345133545|ref|YP_004821336.1|	-	0.0039	17.1	0.1	0.02	14.8	0.0	2.0	1	1	1	2	2	2	1	HTH	domain
FaeA	PF04703.12	gi|345133545|ref|YP_004821336.1|	-	0.0052	17.1	0.0	0.013	15.8	0.0	1.7	2	0	0	2	2	2	1	FaeA-like	protein
HTH_DeoR	PF08220.12	gi|345133545|ref|YP_004821336.1|	-	0.014	15.2	0.1	0.038	13.7	0.1	1.7	1	0	0	1	1	1	0	DeoR-like	helix-turn-helix	domain
TrmB	PF01978.19	gi|345133545|ref|YP_004821336.1|	-	0.024	14.5	0.1	0.22	11.4	0.0	2.3	2	0	0	2	2	2	0	Sugar-specific	transcriptional	regulator	TrmB
HTH_17	PF12728.7	gi|345133545|ref|YP_004821336.1|	-	0.047	13.9	0.1	0.094	12.9	0.1	1.5	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_20	PF12840.7	gi|345133545|ref|YP_004821336.1|	-	0.049	13.7	0.3	0.29	11.2	0.3	2.4	2	1	0	2	2	2	0	Helix-turn-helix	domain
HTH_23	PF13384.6	gi|345133545|ref|YP_004821336.1|	-	0.082	12.7	3.0	0.12	12.2	0.3	2.5	2	1	0	2	2	2	0	Homeodomain-like	domain
HTH_AsnC-type	PF13404.6	gi|345133545|ref|YP_004821336.1|	-	0.084	12.7	0.1	0.21	11.5	0.1	1.7	1	0	0	1	1	1	0	AsnC-type	helix-turn-helix	domain
HTH_30	PF13556.6	gi|345133545|ref|YP_004821336.1|	-	0.1	12.4	0.1	0.18	11.6	0.1	1.4	1	0	0	1	1	1	0	PucR	C-terminal	helix-turn-helix	domain
PaaX	PF07848.12	gi|345133545|ref|YP_004821336.1|	-	0.12	12.6	0.4	0.26	11.5	0.4	1.5	1	0	0	1	1	1	0	PaaX-like	protein
MarR_2	PF12802.7	gi|345133545|ref|YP_004821336.1|	-	0.15	12.0	1.2	4	7.4	0.4	3.1	4	0	0	4	4	4	0	MarR	family
DDE_Tnp_1	PF01609.21	gi|345133548|ref|YP_004821339.1|	-	1e-06	28.6	0.1	2e-06	27.6	0.1	1.5	1	0	0	1	1	1	1	Transposase	DDE	domain
HTH_23	PF13384.6	gi|345133550|ref|YP_004821341.1|	-	0.00052	19.7	0.0	0.0013	18.4	0.0	1.7	1	0	0	1	1	1	1	Homeodomain-like	domain
Sigma70_r4_2	PF08281.12	gi|345133550|ref|YP_004821341.1|	-	0.0032	17.1	0.0	0.028	14.1	0.0	2.4	2	0	0	2	2	2	1	Sigma-70,	region	4
CENP-B_N	PF04218.13	gi|345133550|ref|YP_004821341.1|	-	0.06	13.0	1.7	0.11	12.2	0.0	2.0	2	0	0	2	2	2	0	CENP-B	N-terminal	DNA-binding	domain
Glyco_hyd_101C	PF17451.2	gi|345133553|ref|YP_004821344.1|	-	0.032	14.5	0.2	0.05	13.9	0.2	1.3	1	0	0	1	1	1	0	Glycosyl	hydrolase	101	beta	sandwich	domain
LIM_bind	PF01803.16	gi|345133553|ref|YP_004821344.1|	-	0.17	11.4	0.0	0.22	11.0	0.0	1.1	1	0	0	1	1	1	0	LIM-domain	binding	protein
DDE_Tnp_1	PF01609.21	gi|345133555|ref|YP_004821346.1|	-	0.031	13.9	0.1	0.085	12.5	0.1	1.7	1	1	0	1	1	1	0	Transposase	DDE	domain
CagE_TrbE_VirB	PF03135.14	gi|345133556|ref|YP_004821347.1|	-	5.5e-06	26.6	0.0	1e-05	25.8	0.0	1.3	1	0	0	1	1	1	1	CagE,	TrbE,	VirB	family,	component	of	type	IV	transporter	system
HypA	PF01155.19	gi|345133557|ref|YP_004821348.1|	-	2e-05	24.6	7.1	0.0044	17.0	0.3	2.1	1	1	1	2	2	2	2	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
DZR	PF12773.7	gi|345133557|ref|YP_004821348.1|	-	0.00064	19.7	9.8	0.0012	18.9	9.8	1.4	1	1	0	1	1	1	1	Double	zinc	ribbon
zinc_ribbon_2	PF13240.6	gi|345133557|ref|YP_004821348.1|	-	0.0014	18.3	19.9	0.015	15.0	4.6	2.2	2	0	0	2	2	2	2	zinc-ribbon	domain
Zn_Tnp_IS1595	PF12760.7	gi|345133557|ref|YP_004821348.1|	-	0.0044	17.0	4.7	0.075	13.0	0.2	3.1	2	1	0	3	3	3	1	Transposase	zinc-ribbon	domain
zf-RRN7	PF11781.8	gi|345133557|ref|YP_004821348.1|	-	0.019	14.7	16.8	1.7	8.4	0.3	4.1	3	1	1	4	4	4	0	Zinc-finger	of	RNA-polymerase	I-specific	TFIIB,	Rrn7
NMD3	PF04981.13	gi|345133557|ref|YP_004821348.1|	-	0.026	14.0	1.9	0.026	14.0	1.9	1.4	1	1	0	1	1	1	0	NMD3	family
DUF1451	PF07295.11	gi|345133557|ref|YP_004821348.1|	-	0.048	13.7	7.6	1.5	8.8	1.0	2.2	2	0	0	2	2	2	0	Zinc-ribbon	containing	domain
DUF4379	PF14311.6	gi|345133557|ref|YP_004821348.1|	-	0.055	13.8	9.7	0.092	13.1	0.7	2.8	1	1	0	2	2	2	0	Probable	Zinc-ribbon	domain
zf-RING_10	PF16685.5	gi|345133557|ref|YP_004821348.1|	-	0.1	12.7	7.1	0.66	10.2	1.0	2.1	1	1	1	2	2	2	0	zinc	RING	finger	of	MSL2
Cytochrom_c3_2	PF14537.6	gi|345133557|ref|YP_004821348.1|	-	0.16	12.5	10.9	0.23	11.9	1.2	2.2	1	1	1	2	2	2	0	Cytochrome	c3
TackOD1	PF18551.1	gi|345133557|ref|YP_004821348.1|	-	0.19	11.4	6.0	0.22	11.2	0.1	2.1	1	1	1	2	2	2	0	Thaumarchaeal	output	domain	1
Zn-ribbon_8	PF09723.10	gi|345133557|ref|YP_004821348.1|	-	0.28	11.3	13.8	1.4	9.1	2.2	2.8	2	1	0	2	2	2	0	Zinc	ribbon	domain
zinc_ribbon_15	PF17032.5	gi|345133557|ref|YP_004821348.1|	-	0.37	11.6	7.9	1.9	9.3	0.5	2.2	2	0	0	2	2	2	0	zinc-ribbon	family
DUF2072	PF09845.9	gi|345133557|ref|YP_004821348.1|	-	0.78	10.0	7.8	0.68	10.2	0.5	2.2	1	1	1	2	2	2	0	Zn-ribbon	containing	protein
zf-UBP	PF02148.19	gi|345133557|ref|YP_004821348.1|	-	0.86	10.0	5.9	5.1	7.5	1.4	2.4	2	1	0	2	2	2	0	Zn-finger	in	ubiquitin-hydrolases	and	other	protein
ADK_lid	PF05191.14	gi|345133557|ref|YP_004821348.1|	-	1.2	9.1	15.4	0.18	11.8	1.9	2.9	2	1	0	2	2	2	0	Adenylate	kinase,	active	site	lid
Nudix_N_2	PF14803.6	gi|345133557|ref|YP_004821348.1|	-	5.5	7.0	12.1	7.5	6.6	0.4	3.9	4	0	0	4	4	4	0	Nudix	N-terminal
HTH_24	PF13412.6	gi|345133559|ref|YP_004821350.1|	-	0.034	13.7	0.0	0.1	12.2	0.0	1.8	2	0	0	2	2	2	0	Winged	helix-turn-helix	DNA-binding
HTH_20	PF12840.7	gi|345133559|ref|YP_004821350.1|	-	0.038	14.0	0.0	0.069	13.2	0.0	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain
Hemerythrin	PF01814.23	gi|345133561|ref|YP_004821352.1|	-	0.073	13.7	0.0	0.087	13.4	0.0	1.1	1	0	0	1	1	1	0	Hemerythrin	HHE	cation	binding	domain
XhoI	PF04555.13	gi|345133562|ref|YP_004821353.1|	-	7.3e-90	300.0	0.0	8.6e-90	299.8	0.0	1.0	1	0	0	1	1	1	1	Restriction	endonuclease	XhoI
#
# Program:         hmmscan
# Version:         3.2.1 (June 2018)
# Pipeline mode:   SCAN
# Query file:      /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/halophilic_archaeon_DL31_uid72619/all.faa
# Target file:     /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm
# Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/halophilic_archaeon_DL31_uid72619/all.PFam32-A --tblout /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/halophilic_archaeon_DL31_uid72619/all.PFam32-A.tblout --cpu 20 /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/halophilic_archaeon_DL31_uid72619/all.faa 
# Current dir:     /oak/stanford/groups/akundaje/marinovg/genomes
# Date:            Mon Mar 25 12:59:15 2019
# [ok]