#Protein	Length	Domain	Domain_description	score	bias	c-Evalue	i-Evalue	hmmfrom	hmmto	alifrom	alito	envfrom 	envto	acc
gi|345133532|ref|YP_004821323.1|	452	Methyltransf_26	Methyltransferase	49.2	0.0	1.5e-16	4.5e-13	1	116	28	155	28	156	0.82
gi|345133532|ref|YP_004821323.1|	452	Eco57I	Eco57I	35.0	0.0	4.5e-12	1.3e-08	2	72	95	174	94	199	0.82
gi|345133532|ref|YP_004821323.1|	452	TaqI_C	TaqI-like	31.8	0.0	3e-11	9e-08	31	119	341	439	316	439	0.81
gi|345133532|ref|YP_004821323.1|	452	MTS	Methyltransferase	15.4	0.0	3e-06	0.0089	34	150	30	167	17	183	0.81
gi|345133532|ref|YP_004821323.1|	452	N6_Mtase	N-6	13.1	0.0	1.2e-05	0.036	26	189	3	160	1	182	0.70
gi|345133533|ref|YP_004821324.1|	226	TrmB	Sugar-specific	13.4	0.0	1.9e-05	0.047	20	56	9	45	3	56	0.87
gi|345133533|ref|YP_004821324.1|	226	TrmB	Sugar-specific	0.7	0.0	0.17	4.1e+02	19	32	140	153	129	171	0.82
gi|345133533|ref|YP_004821324.1|	226	MarR_2	MarR	13.8	0.1	1.3e-05	0.032	14	49	7	39	3	65	0.83
gi|345133533|ref|YP_004821324.1|	226	MarR_2	MarR	0.2	0.0	0.24	5.9e+02	13	30	137	152	136	154	0.86
gi|345133533|ref|YP_004821324.1|	226	HTH_24	Winged	10.4	0.0	0.00013	0.31	21	45	15	39	10	39	0.94
gi|345133533|ref|YP_004821324.1|	226	HTH_24	Winged	1.4	0.0	0.084	2.1e+02	11	24	137	150	136	153	0.85
gi|345133533|ref|YP_004821324.1|	226	HTH_11	HTH	13.4	0.0	1.7e-05	0.043	19	49	15	44	7	47	0.87
gi|345133533|ref|YP_004821324.1|	226	HTH_AsnC-type	AsnC-type	11.9	0.2	4.8e-05	0.12	18	42	12	36	8	36	0.91
gi|345133533|ref|YP_004821324.1|	226	HTH_AsnC-type	AsnC-type	-1.6	0.0	0.78	1.9e+03	12	23	138	149	136	153	0.85
gi|345133533|ref|YP_004821324.1|	226	HTH_20	Helix-turn-helix	13.1	0.0	2.4e-05	0.06	25	52	12	39	2	48	0.85
gi|345133538|ref|YP_004821329.1|	92	UPF0150	Uncharacterised	24.6	0.1	2.7e-09	1.4e-05	9	46	24	60	15	62	0.81
gi|345133538|ref|YP_004821329.1|	92	DUF3832	Protein	13.1	0.0	1.5e-05	0.073	5	46	15	56	13	62	0.92
gi|345133538|ref|YP_004821329.1|	92	DUF3837	Domain	12.1	0.0	2.9e-05	0.14	39	74	40	74	29	78	0.84
gi|345133539|ref|YP_004821330.1|	81	YcfA	YcfA-like	34.7	0.0	8.1e-13	1.2e-08	1	56	8	65	8	65	0.89
gi|345133542|ref|YP_004821333.1|	1312	Toprim_3	Toprim	17.8	0.0	7.8e-07	0.0029	2	93	311	425	310	428	0.80
gi|345133542|ref|YP_004821333.1|	1312	Toprim_3	Toprim	-3.1	0.0	2.6	9.5e+03	39	61	1213	1234	1179	1260	0.59
gi|345133542|ref|YP_004821333.1|	1312	Toprim_N	DNA	16.0	0.0	2.2e-06	0.0083	14	112	188	289	170	306	0.80
gi|345133542|ref|YP_004821333.1|	1312	Smr	Smr	14.2	0.0	9.9e-06	0.037	6	77	663	756	661	760	0.84
gi|345133542|ref|YP_004821333.1|	1312	Smr	Smr	-3.3	0.0	2.7	1e+04	60	81	1135	1152	1122	1153	0.57
gi|345133542|ref|YP_004821333.1|	1312	Toprim_4	Toprim	12.3	0.0	3.4e-05	0.12	3	27	311	335	309	406	0.67
gi|345133543|ref|YP_004821334.1|	253	DUF3324	Protein	11.6	0.0	2.2e-05	0.17	42	101	177	235	163	239	0.86
gi|345133543|ref|YP_004821334.1|	253	DUF3659	Protein	-3.4	0.0	1.1	7.8e+03	40	48	110	118	108	126	0.60
gi|345133543|ref|YP_004821334.1|	253	DUF3659	Protein	10.5	0.1	4.7e-05	0.35	12	49	199	235	194	238	0.77
gi|345133544|ref|YP_004821335.1|	75	zf-LSD1	LSD1	11.7	0.8	9.6e-06	0.14	11	23	39	51	39	52	0.93
gi|345133545|ref|YP_004821336.1|	207	Crp	Bacterial	17.7	0.0	1.5e-06	0.0017	7	30	36	59	34	59	0.89
gi|345133545|ref|YP_004821336.1|	207	TrmB	Sugar-specific	14.3	0.0	2.1e-05	0.024	27	62	36	72	34	76	0.87
gi|345133545|ref|YP_004821336.1|	207	TrmB	Sugar-specific	0.3	0.0	0.5	5.7e+02	19	33	148	162	141	166	0.81
gi|345133545|ref|YP_004821336.1|	207	HTH_11	HTH	14.5	0.0	1.8e-05	0.02	5	43	20	59	17	65	0.81
gi|345133545|ref|YP_004821336.1|	207	HTH_11	HTH	-0.3	0.1	0.72	8.2e+02	26	33	65	72	62	74	0.86
gi|345133545|ref|YP_004821336.1|	207	FaeA	FaeA-like	15.8	0.0	9.6e-06	0.011	8	54	23	70	17	77	0.79
gi|345133545|ref|YP_004821336.1|	207	FaeA	FaeA-like	-2.5	0.0	5	5.8e+03	6	21	143	157	142	161	0.67
gi|345133545|ref|YP_004821336.1|	207	HTH_Crp_2	Crp-like	15.6	0.0	8.4e-06	0.0096	33	65	36	71	27	73	0.86
gi|345133545|ref|YP_004821336.1|	207	HTH_DeoR	DeoR-like	13.7	0.1	2.8e-05	0.032	19	46	36	63	33	65	0.91
gi|345133545|ref|YP_004821336.1|	207	MarR_2	MarR	10.1	0.3	0.00042	0.47	9	56	19	66	18	70	0.89
gi|345133545|ref|YP_004821336.1|	207	MarR_2	MarR	-2.3	0.0	3	3.5e+03	48	59	93	102	92	105	0.79
gi|345133545|ref|YP_004821336.1|	207	MarR_2	MarR	-2.9	0.0	4.7	5.4e+03	11	27	143	157	141	159	0.76
gi|345133545|ref|YP_004821336.1|	207	MarR_2	MarR	0.7	0.0	0.36	4.1e+02	43	56	185	198	183	200	0.82
gi|345133545|ref|YP_004821336.1|	207	HTH_17	Helix-turn-helix	12.1	0.1	0.00016	0.18	6	39	36	74	34	78	0.78
gi|345133545|ref|YP_004821336.1|	207	PaaX	PaaX-like	11.8	0.3	0.00015	0.18	31	64	39	72	33	77	0.91
gi|345133545|ref|YP_004821336.1|	207	HTH_20	Helix-turn-helix	-2.4	0.0	3.7	4.2e+03	46	55	19	28	19	32	0.85
gi|345133545|ref|YP_004821336.1|	207	HTH_20	Helix-turn-helix	9.9	0.1	0.00054	0.62	29	60	36	67	32	68	0.86
gi|345133545|ref|YP_004821336.1|	207	HTH_20	Helix-turn-helix	-2.1	0.0	3	3.4e+03	49	56	188	195	178	199	0.83
gi|345133545|ref|YP_004821336.1|	207	HTH_23	Homeodomain-like	11.5	0.4	0.00015	0.18	22	45	36	59	33	81	0.88
gi|345133545|ref|YP_004821336.1|	207	HTH_23	Homeodomain-like	-0.1	0.1	0.67	7.6e+02	2	23	131	157	130	159	0.78
gi|345133545|ref|YP_004821336.1|	207	SHOCT	Short	10.6	0.4	0.00026	0.29	2	18	46	62	45	63	0.89
gi|345133545|ref|YP_004821336.1|	207	SpaB_C	SpaB	3.7	5.1	0.032	36	172	232	128	188	17	192	0.71
gi|345133548|ref|YP_004821339.1|	390	DDE_Tnp_1	Transposase	28.4	0.1	7e-11	1e-06	43	193	149	310	132	326	0.85
gi|345133549|ref|YP_004821340.1|	133	DNA_ligase_IV	DNA	11.5	0.0	1.2e-05	0.18	17	31	3	17	2	20	0.94
gi|345133549|ref|YP_004821340.1|	133	DNA_ligase_IV	DNA	-2.8	0.0	0.37	5.5e+03	22	31	106	115	102	117	0.73
gi|345133550|ref|YP_004821341.1|	239	HTH_23	Homeodomain-like	19.2	0.0	2.6e-07	0.00065	16	41	188	214	181	222	0.85
gi|345133550|ref|YP_004821341.1|	239	Sigma70_r4_2	Sigma-70,	-0.4	0.0	0.32	8e+02	13	29	139	155	139	156	0.87
gi|345133550|ref|YP_004821341.1|	239	Sigma70_r4_2	Sigma-70,	14.1	0.0	9.2e-06	0.023	22	49	186	213	182	213	0.86
gi|345133550|ref|YP_004821341.1|	239	CENP-B_N	CENP-B	-1.5	0.6	0.69	1.7e+03	7	31	121	148	120	149	0.59
gi|345133550|ref|YP_004821341.1|	239	CENP-B_N	CENP-B	12.5	0.0	2.8e-05	0.068	18	44	185	212	181	215	0.83
gi|345133550|ref|YP_004821341.1|	239	DUF2209	Uncharacterized	11.5	0.0	9.4e-05	0.23	56	122	26	92	14	111	0.81
gi|345133550|ref|YP_004821341.1|	239	HTH_IclR	IclR	11.1	0.0	8.7e-05	0.21	8	40	180	212	179	213	0.95
gi|345133550|ref|YP_004821341.1|	239	HTH_28	Helix-turn-helix	-2.2	0.1	1.8	4.4e+03	32	47	7	23	6	25	0.73
gi|345133550|ref|YP_004821341.1|	239	HTH_28	Helix-turn-helix	-1.4	0.2	1	2.5e+03	30	45	142	157	141	159	0.70
gi|345133550|ref|YP_004821341.1|	239	HTH_28	Helix-turn-helix	11.1	0.0	0.00012	0.29	11	35	189	213	181	215	0.89
gi|345133551|ref|YP_004821342.1|	54	DUF1839	Domain	11.5	0.0	7.1e-06	0.11	235	267	16	48	4	53	0.85
gi|345133553|ref|YP_004821344.1|	163	LIM_bind	LIM-domain	10.8	0.0	1.2e-05	0.18	4	44	7	47	5	73	0.85
gi|345133554|ref|YP_004821345.1|	78	DUF3110	Protein	13.1	0.0	4.1e-06	0.06	35	80	26	68	15	73	0.87
gi|345133555|ref|YP_004821346.1|	388	DDE_Tnp_1	Transposase	13.3	0.1	3e-06	0.044	55	181	163	301	129	313	0.61
gi|345133556|ref|YP_004821347.1|	396	AAA_10	AAA-like	-1.3	0.1	0.22	1.1e+03	106	169	135	224	90	234	0.50
gi|345133556|ref|YP_004821347.1|	396	AAA_10	AAA-like	38.6	0.0	1.6e-13	8.1e-10	2	100	275	383	274	391	0.78
gi|345133556|ref|YP_004821347.1|	396	CagE_TrbE_VirB	CagE,	28.8	0.0	1.8e-10	8.9e-07	59	177	66	195	41	200	0.73
gi|345133556|ref|YP_004821347.1|	396	DUF4355	Domain	11.0	1.5	5.9e-05	0.29	43	112	114	194	109	198	0.84
gi|345133557|ref|YP_004821348.1|	109	Zn_Tnp_IS1595	Transposase	2.3	0.2	0.23	1.5e+02	19	27	3	11	1	15	0.66
gi|345133557|ref|YP_004821348.1|	109	Zn_Tnp_IS1595	Transposase	15.4	0.0	1.8e-05	0.012	17	45	15	52	12	53	0.93
gi|345133557|ref|YP_004821348.1|	109	Zn_Tnp_IS1595	Transposase	3.6	0.0	0.088	57	17	33	57	73	55	79	0.79
gi|345133557|ref|YP_004821348.1|	109	DZR	Double	20.3	7.6	5.4e-07	0.00035	1	50	5	65	5	65	0.94
gi|345133557|ref|YP_004821348.1|	109	DnaJ_CXXCXGXG	DnaJ	18.5	5.7	2.3e-06	0.0015	4	65	5	67	4	68	0.83
gi|345133557|ref|YP_004821348.1|	109	HypA	Hydrogenase	13.1	0.2	8.4e-05	0.054	72	110	4	40	1	43	0.87
gi|345133557|ref|YP_004821348.1|	109	HypA	Hydrogenase	7.6	1.0	0.0045	2.9	68	99	42	71	39	76	0.73
gi|345133557|ref|YP_004821348.1|	109	NMD3	NMD3	12.7	0.4	7.7e-05	0.049	1	48	5	57	5	60	0.73
gi|345133557|ref|YP_004821348.1|	109	PyrI_C	Aspartate	0.5	0.0	0.61	3.9e+02	37	48	4	15	1	17	0.83
gi|345133557|ref|YP_004821348.1|	109	PyrI_C	Aspartate	10.0	0.0	0.00064	0.42	20	48	29	57	20	59	0.88
gi|345133557|ref|YP_004821348.1|	109	DUF4379	Domain	6.2	0.3	0.014	8.7	29	39	3	13	1	15	0.88
gi|345133557|ref|YP_004821348.1|	109	DUF4379	Domain	-1.9	0.0	4.5	2.9e+03	31	37	19	25	18	32	0.81
gi|345133557|ref|YP_004821348.1|	109	DUF4379	Domain	10.6	0.5	0.00057	0.37	14	36	30	52	25	64	0.83
gi|345133557|ref|YP_004821348.1|	109	DUF4379	Domain	-1.2	0.0	2.7	1.8e+03	31	44	61	74	60	89	0.73
gi|345133557|ref|YP_004821348.1|	109	zf-MYND	MYND	7.6	1.2	0.0051	3.3	1	16	5	23	5	32	0.85
gi|345133557|ref|YP_004821348.1|	109	zf-MYND	MYND	8.1	0.1	0.0037	2.4	1	16	47	65	47	105	0.85
gi|345133557|ref|YP_004821348.1|	109	Cytochrome_C7	Cytochrome	10.0	5.3	0.00079	0.51	7	63	11	64	3	66	0.81
gi|345133557|ref|YP_004821348.1|	109	Spt4	Spt4/RpoE2	0.9	0.2	0.65	4.2e+02	4	24	5	22	3	40	0.70
gi|345133557|ref|YP_004821348.1|	109	Spt4	Spt4/RpoE2	10.3	0.1	0.00074	0.48	3	30	46	70	44	86	0.82
gi|345133557|ref|YP_004821348.1|	109	DUF1451	Protein	7.0	0.3	0.0067	4.3	115	142	5	28	2	32	0.80
gi|345133557|ref|YP_004821348.1|	109	DUF1451	Protein	6.6	0.6	0.009	5.8	114	141	46	69	40	72	0.83
gi|345133557|ref|YP_004821348.1|	109	zf-C4pol	C4-type	6.0	4.0	0.017	11	1	52	5	65	5	76	0.62
gi|345133557|ref|YP_004821348.1|	109	zf-C3HC4_3	Zinc	6.4	0.4	0.011	7	25	43	4	22	2	26	0.89
gi|345133557|ref|YP_004821348.1|	109	zf-C3HC4_3	Zinc	6.6	1.1	0.0093	6	25	43	46	64	43	67	0.90
gi|345133557|ref|YP_004821348.1|	109	Terminase_GpA	Phage	4.3	2.3	0.016	10	201	241	17	56	2	59	0.70
gi|345133557|ref|YP_004821348.1|	109	Terminase_GpA	Phage	3.1	0.0	0.036	23	200	222	58	82	53	106	0.67
gi|345133557|ref|YP_004821348.1|	109	Copper-fist	Copper	-1.5	0.2	2.2	1.4e+03	9	14	3	8	2	14	0.81
gi|345133557|ref|YP_004821348.1|	109	Copper-fist	Copper	10.6	0.3	0.00038	0.24	6	19	42	55	38	71	0.80
gi|345133557|ref|YP_004821348.1|	109	DUF2072	Zn-ribbon	3.8	0.8	0.075	48	4	31	5	28	3	46	0.82
gi|345133557|ref|YP_004821348.1|	109	DUF2072	Zn-ribbon	8.6	0.3	0.0025	1.6	3	40	46	79	44	106	0.74
gi|345133557|ref|YP_004821348.1|	109	zf-UBP	Zn-finger	4.0	0.1	0.084	54	12	19	3	10	2	16	0.89
gi|345133557|ref|YP_004821348.1|	109	zf-UBP	Zn-finger	6.8	1.0	0.011	7.1	1	23	19	56	19	69	0.64
gi|345133557|ref|YP_004821348.1|	109	Cytochrom_c3_2	Cytochrome	7.1	6.1	0.01	6.8	9	78	5	64	1	65	0.78
gi|345133557|ref|YP_004821348.1|	109	Nudix_N_2	Nudix	3.7	0.1	0.074	48	3	9	5	11	3	18	0.62
gi|345133557|ref|YP_004821348.1|	109	Nudix_N_2	Nudix	1.9	0.1	0.27	1.7e+02	3	9	19	25	19	31	0.84
gi|345133557|ref|YP_004821348.1|	109	Nudix_N_2	Nudix	6.7	0.3	0.0088	5.7	25	32	47	54	45	55	0.91
gi|345133557|ref|YP_004821348.1|	109	Nudix_N_2	Nudix	1.3	0.1	0.41	2.6e+02	3	8	61	66	61	74	0.78
gi|345133557|ref|YP_004821348.1|	109	Ribosomal_L37e	Ribosomal	7.1	0.2	0.0068	4.4	5	26	6	27	4	30	0.87
gi|345133557|ref|YP_004821348.1|	109	Ribosomal_L37e	Ribosomal	3.3	1.6	0.1	67	17	37	46	65	40	80	0.69
gi|345133557|ref|YP_004821348.1|	109	NCD3G	Nine	7.0	0.9	0.0069	4.4	26	51	3	25	2	28	0.84
gi|345133557|ref|YP_004821348.1|	109	NCD3G	Nine	5.1	0.8	0.028	18	26	49	45	65	41	70	0.80
gi|345133557|ref|YP_004821348.1|	109	zf-ribbon_3	zinc-ribbon	10.2	1.6	0.00049	0.32	2	23	2	23	1	25	0.91
gi|345133557|ref|YP_004821348.1|	109	zf-ribbon_3	zinc-ribbon	1.8	3.1	0.22	1.4e+02	3	23	45	65	43	66	0.82
gi|345133557|ref|YP_004821348.1|	109	zinc_ribbon_2	zinc-ribbon	7.9	2.6	0.0033	2.1	2	20	5	23	4	26	0.93
gi|345133557|ref|YP_004821348.1|	109	zinc_ribbon_2	zinc-ribbon	3.7	4.2	0.067	43	2	20	47	65	47	67	0.97
gi|345133559|ref|YP_004821350.1|	232	HTH_24	Winged	10.9	0.0	2.9e-05	0.21	15	46	28	59	15	61	0.87
gi|345133559|ref|YP_004821350.1|	232	HTH_24	Winged	-1.3	0.0	0.19	1.4e+03	11	23	142	154	141	158	0.84
gi|345133559|ref|YP_004821350.1|	232	HTH_IclR	IclR	11.0	0.0	3.1e-05	0.23	7	50	18	62	18	64	0.93
gi|345133561|ref|YP_004821352.1|	88	UPF0150	Uncharacterised	23.8	0.0	1.7e-09	2.5e-05	9	46	20	56	14	58	0.81
gi|345133562|ref|YP_004821353.1|	238	XhoI	Restriction	216.2	0.0	1.8e-68	2.6e-64	2	194	25	215	24	217	0.97