#                                                                           --- full sequence ---- --- best 1 domain ---- --- domain number estimation ----
# target name        accession  query name                       accession    E-value  score  bias   E-value  score  bias   exp reg clu  ov env dom rep inc description of target
#------------------- ----------             -------------------- ---------- --------- ------ ----- --------- ------ -----   --- --- --- --- --- --- --- --- ---------------------
DUF16	PF01519.16	gi|345006829|ref|YP_004809681.1|	-	0.0033	17.9	8.8	0.0033	17.9	8.8	2.5	1	1	1	3	3	3	1	Protein	of	unknown	function	DUF16
YlqD	PF11068.8	gi|345006829|ref|YP_004809681.1|	-	0.029	14.7	5.7	0.029	14.7	5.7	2.3	2	1	0	2	2	2	0	YlqD	protein
SlyX	PF04102.12	gi|345006829|ref|YP_004809681.1|	-	0.043	14.4	8.8	0.12	13.0	6.6	2.4	1	1	1	2	2	2	0	SlyX
GSH_synthase	PF03199.15	gi|345006829|ref|YP_004809681.1|	-	0.084	13.3	0.6	0.2	12.1	0.2	2.0	1	1	1	2	2	2	0	Eukaryotic	glutathione	synthase
DUF1664	PF07889.12	gi|345006829|ref|YP_004809681.1|	-	0.17	11.9	7.9	0.32	11.0	7.9	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1664)
Laminin_II	PF06009.12	gi|345006829|ref|YP_004809681.1|	-	0.23	11.5	6.6	0.072	13.1	3.8	1.6	2	0	0	2	2	2	0	Laminin	Domain	II
MtrG	PF04210.13	gi|345006829|ref|YP_004809681.1|	-	0.25	11.2	1.8	0.82	9.6	0.0	2.4	1	1	1	2	2	2	0	Tetrahydromethanopterin	S-methyltransferase,	subunit	G
ABC_tran_Xtn	PF12848.7	gi|345006829|ref|YP_004809681.1|	-	0.53	10.3	12.4	0.26	11.3	6.6	2.6	2	0	0	2	2	2	0	ABC	transporter
XhlA	PF10779.9	gi|345006829|ref|YP_004809681.1|	-	0.87	9.8	11.9	0.25	11.6	7.3	2.3	1	1	1	2	2	2	0	Haemolysin	XhlA
Med9	PF07544.13	gi|345006829|ref|YP_004809681.1|	-	0.9	9.7	12.2	0.57	10.3	7.9	2.6	2	0	0	2	2	2	0	RNA	polymerase	II	transcription	mediator	complex	subunit	9
Prefoldin	PF02996.17	gi|345006829|ref|YP_004809681.1|	-	1.3	9.0	15.1	4.1	7.3	0.2	2.9	3	0	0	3	3	3	0	Prefoldin	subunit
DHR10	PF18595.1	gi|345006829|ref|YP_004809681.1|	-	2.3	8.3	17.5	0.13	12.3	11.6	1.9	2	0	0	2	2	2	0	Designed	helical	repeat	protein	10	domain
Exonuc_VII_L	PF02601.15	gi|345006829|ref|YP_004809681.1|	-	4.1	6.9	9.6	7.4	6.1	9.6	1.6	1	1	0	1	1	1	0	Exonuclease	VII,	large	subunit
TMPIT	PF07851.13	gi|345006829|ref|YP_004809681.1|	-	7	5.8	9.9	0.54	9.5	4.6	1.7	2	0	0	2	2	2	0	TMPIT-like	protein
DUF2730	PF10805.8	gi|345006830|ref|YP_004809682.1|	-	0.083	13.0	0.1	0.14	12.3	0.1	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2730)
AlbA_2	PF04326.14	gi|345006831|ref|YP_004809683.1|	-	0.0019	18.5	0.0	0.0024	18.2	0.0	1.2	1	0	0	1	1	1	1	Putative	DNA-binding	domain
UPF0236	PF06782.11	gi|345006832|ref|YP_004809684.1|	-	9.7e-06	24.5	0.0	0.00026	19.8	0.0	2.1	2	0	0	2	2	2	2	Uncharacterised	protein	family	(UPF0236)
Transposase_mut	PF00872.18	gi|345006832|ref|YP_004809684.1|	-	0.00037	19.4	0.2	1	8.1	0.0	2.9	2	2	0	2	2	2	2	Transposase,	Mutator	family
Transglut_core3	PF13471.6	gi|345006833|ref|YP_004809685.1|	-	0.034	14.0	0.0	0.066	13.1	0.0	1.5	1	0	0	1	1	1	0	Transglutaminase-like	superfamily
DUF4600	PF15372.6	gi|345006833|ref|YP_004809685.1|	-	0.1	13.0	1.9	2.4	8.6	0.4	2.2	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4600)
DUF746	PF05344.11	gi|345006834|ref|YP_004809686.1|	-	0.093	12.6	0.0	0.13	12.1	0.0	1.2	1	0	0	1	1	1	0	Domain	of	Unknown	Function	(DUF746)
AlbA_2	PF04326.14	gi|345006836|ref|YP_004809688.1|	-	4.4e-16	59.3	0.1	1.4e-15	57.7	0.0	1.8	2	0	0	2	2	2	1	Putative	DNA-binding	domain
TerB	PF05099.13	gi|345006836|ref|YP_004809688.1|	-	0.084	12.8	0.5	0.26	11.2	0.4	1.9	2	0	0	2	2	2	0	Tellurite	resistance	protein	TerB
DUF1447	PF07288.11	gi|345006836|ref|YP_004809688.1|	-	0.085	12.9	0.4	0.085	12.9	0.4	2.2	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1447)
Med2	PF11214.8	gi|345006836|ref|YP_004809688.1|	-	0.12	12.6	5.6	0.25	11.5	0.1	3.0	3	1	0	3	3	3	0	Mediator	complex	subunit	2
DUF4168	PF13767.6	gi|345006836|ref|YP_004809688.1|	-	0.13	13.4	0.4	0.13	13.4	0.4	2.6	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF4168)
zinc_ribbon_9	PF14369.6	gi|345006837|ref|YP_004809689.1|	-	0.048	13.9	0.7	0.11	12.7	0.7	1.7	1	0	0	1	1	1	0	zinc-ribbon
Zn-ribbon_8	PF09723.10	gi|345006837|ref|YP_004809689.1|	-	0.059	13.5	1.7	0.11	12.6	1.7	1.4	1	0	0	1	1	1	0	Zinc	ribbon	domain
HypA	PF01155.19	gi|345006837|ref|YP_004809689.1|	-	0.11	12.6	0.1	0.2	11.7	0.1	1.4	1	0	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
TNRC6-PABC_bdg	PF16608.5	gi|345006837|ref|YP_004809689.1|	-	0.14	11.8	0.1	0.22	11.2	0.1	1.2	1	0	0	1	1	1	0	TNRC6-PABC	binding	domain
DUF262	PF03235.14	gi|345006839|ref|YP_004809691.1|	-	3.5e-25	89.5	0.6	3.5e-25	89.5	0.6	1.7	2	0	0	2	2	2	1	Protein	of	unknown	function	DUF262
DUF1524	PF07510.11	gi|345006839|ref|YP_004809691.1|	-	1.2e-05	25.3	0.1	3.2e-05	23.8	0.1	1.7	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1524)
HNH_4	PF13395.6	gi|345006839|ref|YP_004809691.1|	-	0.012	15.5	0.0	0.032	14.1	0.0	1.7	1	0	0	1	1	1	0	HNH	endonuclease
DUF262	PF03235.14	gi|345006840|ref|YP_004809692.1|	-	7e-29	101.6	1.1	1.2e-28	100.8	0.3	1.9	2	0	0	2	2	2	1	Protein	of	unknown	function	DUF262
AlbA_2	PF04326.14	gi|345006840|ref|YP_004809692.1|	-	1.1e-17	64.5	0.0	2.5e-17	63.3	0.0	1.7	1	0	0	1	1	1	1	Putative	DNA-binding	domain
DUF1524	PF07510.11	gi|345006840|ref|YP_004809692.1|	-	0.0047	16.8	0.0	0.015	15.2	0.0	1.9	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1524)
S1	PF00575.23	gi|345006841|ref|YP_004809693.1|	-	0.16	12.3	0.6	20	5.6	0.0	2.9	2	0	0	2	2	2	0	S1	RNA	binding	domain
DUF499	PF04465.12	gi|345006842|ref|YP_004809694.1|	-	3.1e-37	127.9	0.2	4.3e-30	104.3	0.0	2.8	3	0	0	3	3	3	2	Protein	of	unknown	function	(DUF499)
FliD_C	PF07195.12	gi|345006842|ref|YP_004809694.1|	-	0.028	13.8	0.0	0.081	12.3	0.0	1.7	1	0	0	1	1	1	0	Flagellar	hook-associated	protein	2	C-terminus
AAA	PF00004.29	gi|345006842|ref|YP_004809694.1|	-	0.18	12.2	1.0	1	9.8	0.0	2.6	2	1	1	3	3	3	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
DUF1156	PF06634.12	gi|345006844|ref|YP_004809696.1|	-	3.4e-10	39.9	0.1	7.9e-10	38.7	0.1	1.6	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1156)
UPF0020	PF01170.18	gi|345006844|ref|YP_004809696.1|	-	9.1e-05	22.2	0.1	0.04	13.6	0.0	2.5	2	0	0	2	2	2	2	Putative	RNA	methylase	family	UPF0020
N6_N4_Mtase	PF01555.18	gi|345006844|ref|YP_004809696.1|	-	0.0015	18.3	0.5	0.0037	17.0	0.5	1.9	1	1	0	1	1	1	1	DNA	methylase
OrfB_Zn_ribbon	PF07282.11	gi|345006844|ref|YP_004809696.1|	-	0.25	11.3	0.6	3.3	7.7	0.0	2.5	2	0	0	2	2	2	0	Putative	transposase	DNA-binding	domain
TF_Zn_Ribbon	PF08271.12	gi|345006844|ref|YP_004809696.1|	-	0.91	9.1	2.9	1.1	8.8	0.3	2.4	2	0	0	2	2	2	0	TFIIB	zinc-binding
Helicase_C	PF00271.31	gi|345006845|ref|YP_004809697.1|	-	1.4e-14	54.3	0.0	4.2e-14	52.8	0.0	1.9	1	0	0	1	1	1	1	Helicase	conserved	C-terminal	domain
SNF2_N	PF00176.23	gi|345006845|ref|YP_004809697.1|	-	1.5e-11	43.6	0.0	2.9e-11	42.7	0.0	1.3	1	0	0	1	1	1	1	SNF2	family	N-terminal	domain
PLDc_2	PF13091.6	gi|345006845|ref|YP_004809697.1|	-	2.2e-10	40.5	0.0	2.4e-09	37.2	0.0	2.4	2	0	0	2	2	2	1	PLD-like	domain
ResIII	PF04851.15	gi|345006845|ref|YP_004809697.1|	-	3.8e-06	27.0	0.0	2e-05	24.7	0.0	2.2	2	0	0	2	2	2	1	Type	III	restriction	enzyme,	res	subunit
GerE	PF00196.19	gi|345006846|ref|YP_004809698.1|	-	3.4e-08	32.9	0.4	2.5e-07	30.1	0.2	2.4	2	0	0	2	2	2	1	Bacterial	regulatory	proteins,	luxR	family
Sigma70_r4_2	PF08281.12	gi|345006846|ref|YP_004809698.1|	-	8.1e-06	25.4	2.3	1.9e-05	24.3	0.3	2.5	3	0	0	3	3	3	1	Sigma-70,	region	4
SprT-like	PF10263.9	gi|345006846|ref|YP_004809698.1|	-	2.8e-05	23.9	1.5	4e-05	23.4	0.3	1.9	2	0	0	2	2	2	1	SprT-like	family
HTH_23	PF13384.6	gi|345006846|ref|YP_004809698.1|	-	0.00053	19.7	0.8	0.0045	16.7	0.0	2.6	3	0	0	3	3	3	1	Homeodomain-like	domain
Sigma70_r4	PF04545.16	gi|345006846|ref|YP_004809698.1|	-	0.0028	17.1	2.8	0.078	12.5	0.1	3.0	3	0	0	3	3	3	1	Sigma-70,	region	4
DUF4157	PF13699.6	gi|345006846|ref|YP_004809698.1|	-	0.028	14.7	0.2	0.11	12.7	0.2	2.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4157)
BSP	PF04450.12	gi|345006846|ref|YP_004809698.1|	-	0.029	14.2	0.2	0.052	13.3	0.2	1.5	1	0	0	1	1	1	0	Peptidase	of	plants	and	bacteria
HTH_Tnp_ISL3	PF13542.6	gi|345006846|ref|YP_004809698.1|	-	0.051	13.0	0.3	0.71	9.3	0.0	2.9	3	0	0	3	3	3	0	Helix-turn-helix	domain	of	transposase	family	ISL3
GP3_package	PF16677.5	gi|345006846|ref|YP_004809698.1|	-	0.051	13.7	0.7	0.17	12.1	0.2	2.0	2	0	0	2	2	2	0	DNA-packaging	protein	gp3
HTH_10	PF04967.12	gi|345006846|ref|YP_004809698.1|	-	0.13	12.1	0.3	0.42	10.5	0.1	2.0	2	0	0	2	2	2	0	HTH	DNA	binding	domain
Resolvase	PF00239.21	gi|345006847|ref|YP_004809699.1|	-	2.8e-27	95.6	0.7	4e-27	95.1	0.7	1.2	1	0	0	1	1	1	1	Resolvase,	N	terminal	domain
RNA_Me_trans	PF04252.13	gi|345006847|ref|YP_004809699.1|	-	0.0018	17.9	0.2	0.0041	16.7	0.2	1.6	1	1	0	1	1	1	1	Predicted	SAM-dependent	RNA	methyltransferase
HTH_Crp_2	PF13545.6	gi|345006847|ref|YP_004809699.1|	-	0.01	15.8	0.1	0.19	11.8	0.0	2.5	2	0	0	2	2	2	0	Crp-like	helix-turn-helix	domain
HTH_7	PF02796.15	gi|345006847|ref|YP_004809699.1|	-	0.011	15.8	0.0	0.055	13.6	0.0	2.2	2	0	0	2	2	2	0	Helix-turn-helix	domain	of	resolvase
CENP-P	PF13096.6	gi|345006847|ref|YP_004809699.1|	-	0.1	12.3	0.9	0.71	9.5	0.2	2.0	1	1	1	2	2	2	0	CENP-A-nucleosome	distal	(CAD)	centromere	subunit,	CENP-P
ThiD2	PF17792.1	gi|345006847|ref|YP_004809699.1|	-	0.12	12.9	1.3	0.31	11.5	0.2	2.2	3	0	0	3	3	3	0	ThiD2	family
WYL	PF13280.6	gi|345006848|ref|YP_004809700.1|	-	0.00022	21.3	0.0	0.00066	19.8	0.0	1.7	1	1	0	1	1	1	1	WYL	domain
DUF4411	PF14367.6	gi|345006850|ref|YP_004809702.1|	-	0.011	15.6	1.9	0.079	12.9	0.0	2.7	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF4411)
Phage_integrase	PF00589.22	gi|345006851|ref|YP_004809703.1|	-	3.1e-17	62.9	0.1	1.4e-16	60.8	0.1	1.9	2	0	0	2	2	2	1	Phage	integrase	family
GHL6	PF14871.6	gi|345006851|ref|YP_004809703.1|	-	0.016	15.3	0.2	0.062	13.5	0.0	2.1	3	0	0	3	3	3	0	Hypothetical	glycosyl	hydrolase	6
UPF0236	PF06782.11	gi|345006852|ref|YP_004809704.1|	-	9.7e-06	24.5	0.0	0.00026	19.8	0.0	2.1	2	0	0	2	2	2	2	Uncharacterised	protein	family	(UPF0236)
Transposase_mut	PF00872.18	gi|345006852|ref|YP_004809704.1|	-	0.00037	19.4	0.2	1	8.1	0.0	2.9	2	2	0	2	2	2	2	Transposase,	Mutator	family
DDE_Tnp_1	PF01609.21	gi|345006853|ref|YP_004809705.1|	-	0.031	13.9	0.1	0.085	12.5	0.1	1.7	1	1	0	1	1	1	0	Transposase	DDE	domain
FYRC	PF05965.14	gi|345006854|ref|YP_004809706.1|	-	0.021	15.0	0.0	0.048	13.8	0.0	1.6	1	1	1	2	2	2	0	F/Y	rich	C-terminus
PHD_like	PF12910.7	gi|345006854|ref|YP_004809706.1|	-	0.065	13.3	0.0	0.07	13.1	0.0	1.1	1	0	0	1	1	1	0	Antitoxin	of	toxin-antitoxin,	RelE	/	RelB,	TA	system
DUF1931	PF09123.11	gi|345006855|ref|YP_004809707.1|	-	0.00048	20.2	0.6	0.00051	20.2	0.6	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1931)
CBFD_NFYB_HMF	PF00808.23	gi|345006855|ref|YP_004809707.1|	-	0.0011	19.1	0.0	0.0015	18.8	0.0	1.4	1	1	0	1	1	1	1	Histone-like	transcription	factor	(CBF/NF-Y)	and	archaeal	histone
Glutaredoxin	PF00462.24	gi|345006855|ref|YP_004809707.1|	-	0.063	13.5	0.1	0.082	13.1	0.1	1.2	1	0	0	1	1	1	0	Glutaredoxin
DctP	PF03480.13	gi|345006855|ref|YP_004809707.1|	-	0.14	11.5	0.0	0.16	11.3	0.0	1.0	1	0	0	1	1	1	0	Bacterial	extracellular	solute-binding	protein,	family	7
Exonuc_VII_L	PF02601.15	gi|345006856|ref|YP_004809708.1|	-	4.9e-53	180.7	2.4	6.8e-53	180.2	2.4	1.1	1	0	0	1	1	1	1	Exonuclease	VII,	large	subunit
tRNA_anti_2	PF13742.6	gi|345006856|ref|YP_004809708.1|	-	2.6e-17	62.8	0.0	4.4e-17	62.1	0.0	1.4	1	0	0	1	1	1	1	OB-fold	nucleic	acid	binding	domain
tRNA_anti-codon	PF01336.25	gi|345006856|ref|YP_004809708.1|	-	0.0012	18.8	0.0	0.0022	18.0	0.0	1.4	1	0	0	1	1	1	1	OB-fold	nucleic	acid	binding	domain
Ribosomal_S21	PF01165.20	gi|345006856|ref|YP_004809708.1|	-	0.16	11.7	0.0	0.33	10.7	0.0	1.5	1	0	0	1	1	1	0	Ribosomal	protein	S21
Exonuc_VII_S	PF02609.16	gi|345006857|ref|YP_004809709.1|	-	2e-10	40.5	1.9	2.3e-10	40.4	1.9	1.1	1	0	0	1	1	1	1	Exonuclease	VII	small	subunit
Vps8	PF12816.7	gi|345006857|ref|YP_004809709.1|	-	0.2	11.1	0.2	0.21	11.0	0.2	1.1	1	0	0	1	1	1	0	Golgi	CORVET	complex	core	vacuolar	protein	8
TusA	PF01206.17	gi|345006858|ref|YP_004809710.1|	-	0.036	13.9	0.0	0.053	13.4	0.0	1.3	1	0	0	1	1	1	0	Sulfurtransferase	TusA
Sigma70_r4	PF04545.16	gi|345006858|ref|YP_004809710.1|	-	0.04	13.4	1.5	0.042	13.4	0.2	1.7	2	0	0	2	2	2	0	Sigma-70,	region	4
Sigma70_r4_2	PF08281.12	gi|345006858|ref|YP_004809710.1|	-	0.047	13.4	0.9	0.058	13.1	0.1	1.6	2	0	0	2	2	2	0	Sigma-70,	region	4
Metal_resist	PF13801.6	gi|345006858|ref|YP_004809710.1|	-	0.049	13.8	0.6	0.057	13.6	0.6	1.2	1	0	0	1	1	1	0	Heavy-metal	resistance
IclR	PF01614.18	gi|345006858|ref|YP_004809710.1|	-	0.069	13.0	0.1	0.092	12.6	0.1	1.2	1	0	0	1	1	1	0	Bacterial	transcriptional	regulator
XLF	PF09302.11	gi|345006858|ref|YP_004809710.1|	-	0.11	12.7	0.2	0.12	12.5	0.2	1.1	1	0	0	1	1	1	0	XLF-Cernunnos,	XRcc4-like	factor,	NHEJ	component
HisKA	PF00512.25	gi|345006858|ref|YP_004809710.1|	-	0.12	12.4	0.7	0.18	11.9	0.7	1.3	1	0	0	1	1	1	0	His	Kinase	A	(phospho-acceptor)	domain
DUF5333	PF17267.2	gi|345006858|ref|YP_004809710.1|	-	0.13	12.5	0.1	0.23	11.6	0.1	1.4	1	1	0	1	1	1	0	Family	of	unknown	function	(DUF5333)
TrbC	PF04956.13	gi|345006859|ref|YP_004809711.1|	-	0.2	11.9	2.9	0.33	11.2	1.7	1.8	2	0	0	2	2	2	0	TrbC/VIRB2	family
Meth_synt_2	PF01717.18	gi|345006860|ref|YP_004809712.1|	-	0.045	13.0	0.1	0.075	12.3	0.1	1.2	1	0	0	1	1	1	0	Cobalamin-independent	synthase,	Catalytic	domain
DUF4982	PF16355.5	gi|345006861|ref|YP_004809713.1|	-	0.017	15.0	0.0	0.038	13.9	0.0	1.7	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4982)
TAT_signal	PF10518.9	gi|345006861|ref|YP_004809713.1|	-	0.022	14.6	1.0	0.036	13.9	1.0	1.4	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
DUF3085	PF11284.8	gi|345006861|ref|YP_004809713.1|	-	0.034	14.4	0.0	0.08	13.3	0.0	1.6	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3085)
MG2	PF01835.19	gi|345006861|ref|YP_004809713.1|	-	0.071	13.6	0.3	0.53	10.8	0.0	2.4	2	1	0	2	2	2	0	MG2	domain
LssY_C	PF14067.6	gi|345006862|ref|YP_004809714.1|	-	0.087	12.4	0.0	0.14	11.7	0.0	1.2	1	0	0	1	1	1	0	LssY	C-terminus
AAA_10	PF12846.7	gi|345006864|ref|YP_004809716.1|	-	0.0013	17.7	0.2	0.85	8.5	0.1	2.2	2	0	0	2	2	2	2	AAA-like	domain
CagE_TrbE_VirB	PF03135.14	gi|345006864|ref|YP_004809716.1|	-	0.0047	17.1	0.0	0.0084	16.2	0.0	1.3	1	0	0	1	1	1	1	CagE,	TrbE,	VirB	family,	component	of	type	IV	transporter	system
AAA_22	PF13401.6	gi|345006864|ref|YP_004809716.1|	-	0.0095	16.2	1.6	5	7.4	0.2	3.3	3	1	1	4	4	4	2	AAA	domain
Zot	PF05707.12	gi|345006864|ref|YP_004809716.1|	-	0.085	12.5	0.3	0.49	10.0	0.1	2.1	2	0	0	2	2	2	0	Zonular	occludens	toxin	(Zot)
DUF4184	PF13803.6	gi|345006864|ref|YP_004809716.1|	-	0.1	12.3	0.0	0.17	11.6	0.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4184)
DUF87	PF01935.17	gi|345006865|ref|YP_004809717.1|	-	0.00079	19.6	0.2	0.0065	16.6	0.0	2.7	3	1	0	3	3	3	1	Helicase	HerA,	central	domain
TraG-D_C	PF12696.7	gi|345006865|ref|YP_004809717.1|	-	0.0095	15.9	0.4	0.036	14.1	0.0	2.1	2	0	0	2	2	2	1	TraM	recognition	site	of	TraD	and	TraG
Acetyltransf_18	PF18014.1	gi|345006865|ref|YP_004809717.1|	-	0.16	11.8	0.0	0.35	10.7	0.0	1.5	1	0	0	1	1	1	0	Acetyltransferase	(GNAT)	domain
DNA_primase_S	PF01896.19	gi|345006866|ref|YP_004809718.1|	-	8.9e-05	22.6	0.0	0.046	13.8	0.0	2.3	1	1	1	2	2	2	2	DNA	primase	small	subunit
NKWYS	PF10364.9	gi|345006866|ref|YP_004809718.1|	-	0.14	12.3	0.0	0.23	11.6	0.0	1.2	1	0	0	1	1	1	0	Putative	capsular	polysaccharide	synthesis	protein
TPR_14	PF13428.6	gi|345006867|ref|YP_004809719.1|	-	0.23	12.4	2.5	8.8	7.5	0.1	3.3	2	1	1	3	3	3	0	Tetratricopeptide	repeat
AAA_16	PF13191.6	gi|345006868|ref|YP_004809720.1|	-	1.2e-08	35.6	0.4	1.1e-07	32.4	0.0	2.9	3	0	0	3	3	3	1	AAA	ATPase	domain
AAA_22	PF13401.6	gi|345006868|ref|YP_004809720.1|	-	1.7e-06	28.3	0.0	1.1e-05	25.8	0.0	2.4	2	0	0	2	2	2	1	AAA	domain
DUF2791	PF10923.8	gi|345006868|ref|YP_004809720.1|	-	0.068	12.0	0.0	0.19	10.5	0.0	1.7	2	0	0	2	2	2	0	P-loop	Domain	of	unknown	function	(DUF2791)
Sedlin_N	PF04628.13	gi|345006868|ref|YP_004809720.1|	-	0.073	13.2	0.0	0.45	10.6	0.0	2.3	2	0	0	2	2	2	0	Sedlin,	N-terminal	conserved	region
AAA_35	PF14516.6	gi|345006868|ref|YP_004809720.1|	-	0.087	11.6	0.0	2.4	6.9	0.0	2.3	2	0	0	2	2	2	0	AAA-like	domain
NACHT	PF05729.12	gi|345006868|ref|YP_004809720.1|	-	0.14	12.1	0.0	1.2	9.0	0.0	2.5	2	0	0	2	2	2	0	NACHT	domain
SYCP2_ARLD	PF18581.1	gi|345006868|ref|YP_004809720.1|	-	0.18	11.8	0.1	0.4	10.7	0.1	1.5	1	0	0	1	1	1	0	Synaptonemal	complex	2	armadillo-repeat-like	domain
TF_Zn_Ribbon	PF08271.12	gi|345006872|ref|YP_004809724.1|	-	0.027	14.0	0.7	0.027	14.0	0.7	2.0	2	0	0	2	2	2	0	TFIIB	zinc-binding
PHD	PF00628.29	gi|345006872|ref|YP_004809724.1|	-	1.2	9.1	7.0	2.5	8.1	4.1	2.5	2	1	0	2	2	2	0	PHD-finger
RHH_1	PF01402.21	gi|345006874|ref|YP_004809726.1|	-	0.17	11.9	1.1	0.27	11.2	0.0	1.9	2	0	0	2	2	2	0	Ribbon-helix-helix	protein,	copG	family
PIN_9	PF18477.1	gi|345006875|ref|YP_004809727.1|	-	0.0078	16.5	0.0	0.012	15.9	0.0	1.3	1	0	0	1	1	1	1	PIN	like	domain
Mrr_N	PF14338.6	gi|345006876|ref|YP_004809728.1|	-	0.00049	20.2	0.0	0.00063	19.8	0.0	1.3	1	0	0	1	1	1	1	Mrr	N-terminal	domain
DUF2250	PF10007.9	gi|345006876|ref|YP_004809728.1|	-	0.00078	19.5	0.0	0.0013	18.8	0.0	1.4	1	1	0	1	1	1	1	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
HTH_42	PF06224.12	gi|345006876|ref|YP_004809728.1|	-	0.03	13.9	0.0	0.031	13.8	0.0	1.1	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
HTH_45	PF14947.6	gi|345006876|ref|YP_004809728.1|	-	0.1	12.6	0.1	0.11	12.5	0.1	1.3	1	1	0	1	1	1	0	Winged	helix-turn-helix
YjhX_toxin	PF09857.9	gi|345006876|ref|YP_004809728.1|	-	0.13	12.3	0.0	4.8	7.2	0.0	2.1	1	1	0	1	1	1	0	Putative	toxin	of	bacterial	toxin-antitoxin	pair
DUF4423	PF14394.6	gi|345006876|ref|YP_004809728.1|	-	0.15	11.8	0.0	0.17	11.6	0.0	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4423)
HalOD1	PF18545.1	gi|345006877|ref|YP_004809729.1|	-	1.9e-07	31.2	1.2	2.6e-07	30.8	1.2	1.3	1	0	0	1	1	1	1	Halobacterial	output	domain	1
DUF4318	PF14201.6	gi|345006877|ref|YP_004809729.1|	-	0.11	13.0	0.0	0.17	12.4	0.0	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4318)
HTH_20	PF12840.7	gi|345006878|ref|YP_004809730.1|	-	1.2e-05	25.2	1.1	1.8e-05	24.7	0.3	1.7	2	0	0	2	2	2	1	Helix-turn-helix	domain
TrmB	PF01978.19	gi|345006878|ref|YP_004809730.1|	-	4.3e-05	23.3	0.0	8.2e-05	22.4	0.0	1.4	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
GntR	PF00392.21	gi|345006878|ref|YP_004809730.1|	-	0.0018	17.9	0.1	0.0054	16.3	0.1	1.8	2	0	0	2	2	2	1	Bacterial	regulatory	proteins,	gntR	family
HTH_5	PF01022.20	gi|345006878|ref|YP_004809730.1|	-	0.0084	16.0	0.0	0.014	15.2	0.0	1.4	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
MarR_2	PF12802.7	gi|345006878|ref|YP_004809730.1|	-	0.012	15.5	0.1	0.021	14.7	0.1	1.4	1	0	0	1	1	1	0	MarR	family
HTH_Crp_2	PF13545.6	gi|345006878|ref|YP_004809730.1|	-	0.013	15.5	0.0	0.029	14.3	0.0	1.6	1	0	0	1	1	1	0	Crp-like	helix-turn-helix	domain
HTH_23	PF13384.6	gi|345006878|ref|YP_004809730.1|	-	0.022	14.5	0.0	0.047	13.5	0.0	1.5	1	0	0	1	1	1	0	Homeodomain-like	domain
HTH_11	PF08279.12	gi|345006878|ref|YP_004809730.1|	-	0.043	13.8	0.1	0.082	12.9	0.1	1.4	1	0	0	1	1	1	0	HTH	domain
RP-C	PF03428.13	gi|345006878|ref|YP_004809730.1|	-	0.045	13.4	0.0	0.081	12.6	0.0	1.3	1	0	0	1	1	1	0	Replication	protein	C	N-terminal	domain
Rrf2	PF02082.20	gi|345006878|ref|YP_004809730.1|	-	0.071	13.5	0.0	1.8	9.0	0.0	2.2	2	0	0	2	2	2	0	Transcriptional	regulator
HTH_IclR	PF09339.10	gi|345006878|ref|YP_004809730.1|	-	0.13	12.0	0.2	0.27	11.0	0.2	1.5	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
Trp_repressor	PF01371.19	gi|345006878|ref|YP_004809730.1|	-	0.16	12.2	0.0	1.2	9.3	0.0	2.0	2	0	0	2	2	2	0	Trp	repressor	protein
TAT_signal	PF10518.9	gi|345006879|ref|YP_004809731.1|	-	0.019	14.8	0.8	0.038	13.9	0.8	1.5	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
PEP_mutase	PF13714.6	gi|345006879|ref|YP_004809731.1|	-	0.09	12.2	0.0	0.15	11.4	0.0	1.3	1	0	0	1	1	1	0	Phosphoenolpyruvate	phosphomutase
Rubredoxin_2	PF18073.1	gi|345006879|ref|YP_004809731.1|	-	6.3	6.6	7.7	3.7	7.4	0.9	2.9	3	0	0	3	3	3	0	Rubredoxin	metal	binding	domain
DUF4191	PF13829.6	gi|345006880|ref|YP_004809732.1|	-	0.3	10.4	1.2	0.31	10.3	1.2	1.0	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4191)
BatA	PF07584.11	gi|345006880|ref|YP_004809732.1|	-	9.3	6.7	10.5	1.6	9.2	1.7	2.0	1	1	1	2	2	2	0	Aerotolerance	regulator	N-terminal
DUF2065	PF09838.9	gi|345006881|ref|YP_004809733.1|	-	0.058	13.4	0.4	0.058	13.4	0.4	3.0	3	0	0	3	3	3	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2065)
ABC_tran	PF00005.27	gi|345006882|ref|YP_004809734.1|	-	7.3e-28	97.8	0.0	1.1e-27	97.3	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|345006882|ref|YP_004809734.1|	-	9.9e-17	61.7	2.1	1.4e-13	51.3	0.7	2.1	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_23	PF13476.6	gi|345006882|ref|YP_004809734.1|	-	0.01	16.3	0.1	0.023	15.2	0.1	1.7	1	1	0	1	1	1	0	AAA	domain
AAA_22	PF13401.6	gi|345006882|ref|YP_004809734.1|	-	0.015	15.6	0.3	0.11	12.7	0.2	2.2	1	1	0	1	1	1	0	AAA	domain
SMC_N	PF02463.19	gi|345006882|ref|YP_004809734.1|	-	0.021	14.2	0.0	3.4	7.0	0.0	2.1	2	0	0	2	2	2	0	RecF/RecN/SMC	N	terminal	domain
AAA_30	PF13604.6	gi|345006882|ref|YP_004809734.1|	-	0.027	14.2	0.1	0.054	13.2	0.1	1.5	1	0	0	1	1	1	0	AAA	domain
AAA_24	PF13479.6	gi|345006882|ref|YP_004809734.1|	-	0.032	13.9	0.0	0.28	10.9	0.0	2.1	2	0	0	2	2	2	0	AAA	domain
AAA	PF00004.29	gi|345006882|ref|YP_004809734.1|	-	0.05	14.0	0.2	0.48	10.9	0.2	2.2	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_29	PF13555.6	gi|345006882|ref|YP_004809734.1|	-	0.052	13.3	0.1	0.1	12.4	0.1	1.4	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
AAA_16	PF13191.6	gi|345006882|ref|YP_004809734.1|	-	0.054	13.9	0.0	0.085	13.2	0.0	1.7	1	1	0	1	1	1	0	AAA	ATPase	domain
AAA_14	PF13173.6	gi|345006882|ref|YP_004809734.1|	-	0.074	13.1	0.1	9.5	6.3	0.1	2.3	2	0	0	2	2	2	0	AAA	domain
AAA_27	PF13514.6	gi|345006882|ref|YP_004809734.1|	-	0.08	12.5	0.0	0.14	11.8	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
AAA_15	PF13175.6	gi|345006882|ref|YP_004809734.1|	-	0.14	11.8	0.0	6.3	6.4	0.0	2.1	1	1	0	2	2	2	0	AAA	ATPase	domain
AAA_18	PF13238.6	gi|345006882|ref|YP_004809734.1|	-	0.16	12.5	0.0	1.5	9.3	0.0	2.2	1	1	0	1	1	1	0	AAA	domain
AAA_13	PF13166.6	gi|345006882|ref|YP_004809734.1|	-	0.24	10.0	0.0	0.37	9.4	0.0	1.2	1	0	0	1	1	1	0	AAA	domain
DUF1118	PF06549.12	gi|345006883|ref|YP_004809735.1|	-	0.52	10.7	7.4	2.1	8.7	3.6	2.9	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1118)
Gram_pos_anchor	PF00746.21	gi|345006885|ref|YP_004809737.1|	-	0.94	9.5	4.7	3.9	7.5	0.0	2.8	3	0	0	3	3	3	0	LPXTG	cell	wall	anchor	motif
UPF0175	PF03683.13	gi|345006886|ref|YP_004809738.1|	-	3.3e-11	42.7	0.2	3.9e-11	42.5	0.2	1.1	1	0	0	1	1	1	1	Uncharacterised	protein	family	(UPF0175)
tRNA_anti-codon	PF01336.25	gi|345006889|ref|YP_004809741.1|	-	0.00059	19.8	0.1	0.0012	18.8	0.1	1.5	1	0	0	1	1	1	1	OB-fold	nucleic	acid	binding	domain
DUF3553	PF12073.8	gi|345006889|ref|YP_004809741.1|	-	0.22	11.3	2.2	0.65	9.8	0.7	2.3	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3553)
HNH_repeat	PF18780.1	gi|345006890|ref|YP_004809742.1|	-	0.0007	19.3	2.1	0.001	18.8	0.4	2.0	2	0	0	2	2	2	1	Homing	endonuclease	repeat
HNH_2	PF13391.6	gi|345006890|ref|YP_004809742.1|	-	0.001	19.2	1.8	0.0029	17.7	1.7	1.9	1	1	0	1	1	1	1	HNH	endonuclease
HNH	PF01844.23	gi|345006890|ref|YP_004809742.1|	-	0.0024	18.0	1.9	0.0054	16.9	1.9	1.6	1	0	0	1	1	1	1	HNH	endonuclease
LexA_DNA_bind	PF01726.16	gi|345006890|ref|YP_004809742.1|	-	0.0081	15.9	0.0	1.9	8.4	0.0	2.6	2	0	0	2	2	2	2	LexA	DNA	binding	domain
WRKY	PF03106.15	gi|345006890|ref|YP_004809742.1|	-	0.035	14.3	0.8	0.035	14.3	0.8	1.9	2	0	0	2	2	2	0	WRKY	DNA	-binding	domain
Lipase3_N	PF03893.16	gi|345006890|ref|YP_004809742.1|	-	0.17	11.9	0.6	45	4.2	0.0	3.2	3	0	0	3	3	3	0	Lipase	3	N-terminal	region
HTH_5	PF01022.20	gi|345006892|ref|YP_004809744.1|	-	3.5e-05	23.6	0.0	0.0001	22.1	0.0	1.8	2	0	0	2	2	2	1	Bacterial	regulatory	protein,	arsR	family
HTH_45	PF14947.6	gi|345006892|ref|YP_004809744.1|	-	0.0028	17.6	0.0	0.0047	16.9	0.0	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix
TrmB	PF01978.19	gi|345006892|ref|YP_004809744.1|	-	0.0056	16.5	0.1	0.027	14.3	0.1	2.0	1	1	1	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_IclR	PF09339.10	gi|345006892|ref|YP_004809744.1|	-	0.01	15.6	0.0	0.072	12.9	0.0	2.3	1	1	0	1	1	1	1	IclR	helix-turn-helix	domain
HTH_11	PF08279.12	gi|345006892|ref|YP_004809744.1|	-	0.027	14.4	0.1	0.086	12.8	0.0	1.8	2	0	0	2	2	2	0	HTH	domain
HTH_20	PF12840.7	gi|345006892|ref|YP_004809744.1|	-	0.039	14.0	0.0	0.083	13.0	0.0	1.5	1	0	0	1	1	1	0	Helix-turn-helix	domain
DUF1724	PF08350.10	gi|345006892|ref|YP_004809744.1|	-	0.049	13.8	0.0	0.088	13.0	0.0	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1724)
Phage_pRha	PF09669.10	gi|345006892|ref|YP_004809744.1|	-	0.1	13.2	0.0	0.21	12.2	0.0	1.6	1	0	0	1	1	1	0	Phage	regulatory	protein	Rha	(Phage_pRha)
HTH_Crp_2	PF13545.6	gi|345006892|ref|YP_004809744.1|	-	0.1	12.6	0.0	0.21	11.6	0.0	1.6	1	0	0	1	1	1	0	Crp-like	helix-turn-helix	domain
HTH_24	PF13412.6	gi|345006892|ref|YP_004809744.1|	-	0.14	11.7	0.0	0.38	10.4	0.0	1.8	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
HTH_20	PF12840.7	gi|345006894|ref|YP_004809746.1|	-	3.9e-11	42.9	0.0	6.3e-11	42.2	0.0	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_5	PF01022.20	gi|345006894|ref|YP_004809746.1|	-	3.7e-08	33.1	0.0	7.8e-08	32.1	0.0	1.5	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
MarR_2	PF12802.7	gi|345006894|ref|YP_004809746.1|	-	2.1e-06	27.5	0.0	3.7e-06	26.7	0.0	1.4	1	0	0	1	1	1	1	MarR	family
HTH_24	PF13412.6	gi|345006894|ref|YP_004809746.1|	-	2.3e-06	27.0	0.0	4.3e-06	26.2	0.0	1.5	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
MarR	PF01047.22	gi|345006894|ref|YP_004809746.1|	-	1.1e-05	25.2	0.0	2.6e-05	24.0	0.0	1.6	1	0	0	1	1	1	1	MarR	family
TrmB	PF01978.19	gi|345006894|ref|YP_004809746.1|	-	7.8e-05	22.5	0.0	0.00015	21.6	0.0	1.4	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
COX8	PF02285.15	gi|345006894|ref|YP_004809746.1|	-	0.00094	19.0	2.0	0.24	11.3	0.5	2.4	2	0	0	2	2	2	2	Cytochrome	oxidase	c	subunit	VIII
B-block_TFIIIC	PF04182.12	gi|345006894|ref|YP_004809746.1|	-	0.0015	18.7	0.0	0.0029	17.7	0.0	1.4	1	0	0	1	1	1	1	B-block	binding	subunit	of	TFIIIC
HTH_27	PF13463.6	gi|345006894|ref|YP_004809746.1|	-	0.0059	17.1	0.0	0.012	16.1	0.0	1.4	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
Dimerisation2	PF16864.5	gi|345006894|ref|YP_004809746.1|	-	0.03	14.3	0.0	0.041	13.9	0.0	1.3	1	0	0	1	1	1	0	Dimerisation	domain
CDC37_C	PF08564.10	gi|345006894|ref|YP_004809746.1|	-	0.036	14.2	0.0	0.061	13.4	0.0	1.3	1	0	0	1	1	1	0	Cdc37	C	terminal	domain
FaeA	PF04703.12	gi|345006894|ref|YP_004809746.1|	-	0.036	14.4	0.0	0.066	13.6	0.0	1.3	1	0	0	1	1	1	0	FaeA-like	protein
HTH_11	PF08279.12	gi|345006894|ref|YP_004809746.1|	-	0.051	13.5	0.0	0.094	12.7	0.0	1.4	1	0	0	1	1	1	0	HTH	domain
DUF2250	PF10007.9	gi|345006894|ref|YP_004809746.1|	-	0.067	13.3	0.0	0.11	12.7	0.0	1.2	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
SgrR_N	PF12793.7	gi|345006894|ref|YP_004809746.1|	-	0.072	13.3	0.0	0.11	12.7	0.0	1.4	1	1	0	1	1	1	0	Sugar	transport-related	sRNA	regulator	N-term
DUF2513	PF10711.9	gi|345006894|ref|YP_004809746.1|	-	0.074	13.4	0.0	0.11	12.7	0.0	1.3	1	0	0	1	1	1	0	Hypothetical	protein	(DUF2513)
Rrf2	PF02082.20	gi|345006894|ref|YP_004809746.1|	-	0.1	13.0	0.0	0.23	11.8	0.0	1.5	1	0	0	1	1	1	0	Transcriptional	regulator
HTH_10	PF04967.12	gi|345006894|ref|YP_004809746.1|	-	0.1	12.4	0.0	0.22	11.4	0.0	1.5	1	0	0	1	1	1	0	HTH	DNA	binding	domain
Sigma70_r4_2	PF08281.12	gi|345006894|ref|YP_004809746.1|	-	0.11	12.1	0.0	0.22	11.2	0.0	1.5	1	0	0	1	1	1	0	Sigma-70,	region	4
HTH_Crp_2	PF13545.6	gi|345006894|ref|YP_004809746.1|	-	0.14	12.1	0.0	0.29	11.1	0.0	1.5	1	0	0	1	1	1	0	Crp-like	helix-turn-helix	domain
HTH_7	PF02796.15	gi|345006894|ref|YP_004809746.1|	-	0.18	11.9	0.0	0.4	10.8	0.0	1.5	1	0	0	1	1	1	0	Helix-turn-helix	domain	of	resolvase
DDE_Tnp_IS66	PF03050.14	gi|345006895|ref|YP_004809747.1|	-	7e-49	166.8	0.2	7e-49	166.8	0.2	2.0	2	1	0	2	2	2	1	Transposase	IS66	family
ZapB	PF06005.12	gi|345006895|ref|YP_004809747.1|	-	3e-09	37.2	6.3	9.7e-09	35.6	6.3	1.9	1	0	0	1	1	1	1	Cell	division	protein	ZapB
zf-IS66	PF13005.7	gi|345006895|ref|YP_004809747.1|	-	1.9e-05	25.0	4.3	4.5e-05	23.8	4.3	1.7	1	0	0	1	1	1	1	zinc-finger	binding	domain	of	transposase	IS66
YabA	PF06156.13	gi|345006895|ref|YP_004809747.1|	-	4.3e-05	24.1	4.2	0.00014	22.4	4.2	1.8	1	0	0	1	1	1	1	Initiation	control	protein	YabA
CASP_C	PF08172.12	gi|345006895|ref|YP_004809747.1|	-	0.00024	20.6	1.9	0.00039	19.9	1.9	1.2	1	0	0	1	1	1	1	CASP	C	terminal
JIP_LZII	PF16471.5	gi|345006895|ref|YP_004809747.1|	-	0.00056	20.0	3.4	0.0012	19.0	3.4	1.6	1	0	0	1	1	1	1	JNK-interacting	protein	leucine	zipper	II
bZIP_1	PF00170.21	gi|345006895|ref|YP_004809747.1|	-	0.0018	18.3	7.8	0.004	17.2	7.8	1.6	1	0	0	1	1	1	1	bZIP	transcription	factor
DDE_Tnp_IS240	PF13610.6	gi|345006895|ref|YP_004809747.1|	-	0.003	17.8	0.8	0.013	15.7	0.0	2.3	2	1	0	2	2	2	1	DDE	domain
SlyX	PF04102.12	gi|345006895|ref|YP_004809747.1|	-	0.0054	17.3	5.4	0.014	16.0	5.4	1.7	1	0	0	1	1	1	1	SlyX
NUDE_C	PF04880.13	gi|345006895|ref|YP_004809747.1|	-	0.013	16.0	4.4	0.034	14.6	4.4	1.6	1	0	0	1	1	1	0	NUDE	protein,	C-terminal	conserved	region
CCDC106	PF15794.5	gi|345006895|ref|YP_004809747.1|	-	0.02	14.6	3.6	0.042	13.6	3.6	1.4	1	0	0	1	1	1	0	Coiled-coil	domain-containing	protein	106
Cnn_1N	PF07989.11	gi|345006895|ref|YP_004809747.1|	-	0.026	14.7	6.4	0.056	13.6	6.4	1.5	1	0	0	1	1	1	0	Centrosomin	N-terminal	motif	1
SKA1	PF07160.12	gi|345006895|ref|YP_004809747.1|	-	0.029	14.2	0.9	0.057	13.3	0.9	1.4	1	0	0	1	1	1	0	Spindle	and	kinetochore-associated	protein	1
CENP-H	PF05837.12	gi|345006895|ref|YP_004809747.1|	-	0.03	14.7	3.3	0.072	13.5	3.3	1.6	1	0	0	1	1	1	0	Centromere	protein	H	(CENP-H)
DUF4201	PF13870.6	gi|345006895|ref|YP_004809747.1|	-	0.039	13.7	3.6	0.078	12.7	3.6	1.5	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4201)
RP-C_C	PF11800.8	gi|345006895|ref|YP_004809747.1|	-	0.04	14.0	1.2	0.082	13.0	1.2	1.5	1	0	0	1	1	1	0	Replication	protein	C	C-terminal	region
V_ATPase_I	PF01496.19	gi|345006895|ref|YP_004809747.1|	-	0.049	11.6	2.1	0.07	11.1	2.1	1.1	1	0	0	1	1	1	0	V-type	ATPase	116kDa	subunit	family
HSBP1	PF06825.12	gi|345006895|ref|YP_004809747.1|	-	0.06	13.2	0.3	0.11	12.3	0.3	1.4	1	0	0	1	1	1	0	Heat	shock	factor	binding	protein	1
XhlA	PF10779.9	gi|345006895|ref|YP_004809747.1|	-	0.067	13.4	5.8	0.18	12.0	5.8	1.7	1	0	0	1	1	1	0	Haemolysin	XhlA
FlaC_arch	PF05377.11	gi|345006895|ref|YP_004809747.1|	-	0.072	13.5	3.1	0.17	12.3	3.1	1.6	1	0	0	1	1	1	0	Flagella	accessory	protein	C	(FlaC)
TSC22	PF01166.18	gi|345006895|ref|YP_004809747.1|	-	0.087	13.1	14.9	0.11	12.8	7.5	3.3	2	1	1	3	3	3	0	TSC-22/dip/bun	family
HOOK	PF05622.12	gi|345006895|ref|YP_004809747.1|	-	0.093	10.9	3.9	0.13	10.3	3.9	1.1	1	0	0	1	1	1	0	HOOK	protein
GAS	PF13851.6	gi|345006895|ref|YP_004809747.1|	-	0.12	11.8	6.2	0.21	10.9	6.2	1.3	1	0	0	1	1	1	0	Growth-arrest	specific	micro-tubule	binding
DUF4988	PF16378.5	gi|345006895|ref|YP_004809747.1|	-	0.14	11.8	3.3	0.89	9.2	1.5	2.2	2	0	0	2	2	2	0	Domain	of	unknown	function
HALZ	PF02183.18	gi|345006895|ref|YP_004809747.1|	-	0.2	11.9	7.1	0.26	11.6	6.1	1.8	2	0	0	2	2	1	0	Homeobox	associated	leucine	zipper
EMP24_GP25L	PF01105.24	gi|345006895|ref|YP_004809747.1|	-	0.24	11.3	5.2	4.1	7.3	4.2	2.2	2	0	0	2	2	2	0	emp24/gp25L/p24	family/GOLD
Synaptobrevin	PF00957.21	gi|345006895|ref|YP_004809747.1|	-	0.25	11.1	1.7	0.43	10.4	1.7	1.3	1	0	0	1	1	1	0	Synaptobrevin
Spc24	PF08286.11	gi|345006895|ref|YP_004809747.1|	-	0.27	11.5	3.5	0.57	10.5	3.5	1.5	1	0	0	1	1	1	0	Spc24	subunit	of	Ndc80
DivIC	PF04977.15	gi|345006895|ref|YP_004809747.1|	-	0.31	10.8	8.4	0.77	9.6	8.0	1.9	1	1	0	1	1	1	0	Septum	formation	initiator
SpoVR	PF04293.13	gi|345006895|ref|YP_004809747.1|	-	0.35	9.5	4.7	0.55	8.9	4.7	1.2	1	0	0	1	1	1	0	SpoVR	like	protein
Shugoshin_N	PF07558.11	gi|345006895|ref|YP_004809747.1|	-	0.62	10.0	6.8	0.15	11.9	2.5	2.0	1	1	1	2	2	2	0	Shugoshin	N-terminal	coiled-coil	region
Jnk-SapK_ap_N	PF09744.9	gi|345006895|ref|YP_004809747.1|	-	0.68	10.1	7.3	1.9	8.7	7.3	1.7	1	0	0	1	1	1	0	JNK_SAPK-associated	protein-1
Chibby	PF14645.6	gi|345006895|ref|YP_004809747.1|	-	0.7	10.3	4.1	1.7	9.1	4.1	1.6	1	0	0	1	1	1	0	Chibby	family
APG6_N	PF17675.1	gi|345006895|ref|YP_004809747.1|	-	0.77	10.3	9.2	1.5	9.3	9.2	1.5	1	0	0	1	1	1	0	Apg6	coiled-coil	region
ADIP	PF11559.8	gi|345006895|ref|YP_004809747.1|	-	0.78	9.8	7.1	1.7	8.7	7.1	1.5	1	0	0	1	1	1	0	Afadin-	and	alpha	-actinin-Binding
Prefoldin_2	PF01920.20	gi|345006895|ref|YP_004809747.1|	-	0.92	9.5	8.3	1.8	8.6	8.3	1.4	1	0	0	1	1	1	0	Prefoldin	subunit
bZIP_2	PF07716.15	gi|345006895|ref|YP_004809747.1|	-	1.2	9.3	14.7	8.7	6.5	6.5	2.6	1	1	1	2	2	2	0	Basic	region	leucine	zipper
GIT_CC	PF16559.5	gi|345006895|ref|YP_004809747.1|	-	1.2	9.0	5.9	2.4	8.1	5.9	1.5	1	0	0	1	1	1	0	GIT	coiled-coil	Rho	guanine	nucleotide	exchange	factor
GrpE	PF01025.19	gi|345006895|ref|YP_004809747.1|	-	1.2	8.8	5.5	2.3	7.9	5.5	1.4	1	0	0	1	1	1	0	GrpE
DUF2205	PF10224.9	gi|345006895|ref|YP_004809747.1|	-	1.5	8.9	5.6	3.6	7.7	5.6	1.6	1	0	0	1	1	1	0	Short	coiled-coil	protein
Astro_capsid_p	PF12226.8	gi|345006895|ref|YP_004809747.1|	-	1.5	7.9	4.8	2.3	7.3	4.8	1.2	1	0	0	1	1	1	0	Turkey	astrovirus	capsid	protein
DUF3552	PF12072.8	gi|345006895|ref|YP_004809747.1|	-	2.1	7.7	7.5	3.7	6.9	7.5	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3552)
DUF3450	PF11932.8	gi|345006895|ref|YP_004809747.1|	-	2.3	7.4	8.2	0.46	9.8	3.0	2.3	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF3450)
NRBF2	PF08961.10	gi|345006895|ref|YP_004809747.1|	-	2.4	7.7	14.9	0.031	13.9	7.5	1.6	2	0	0	2	2	1	0	Nuclear	receptor-binding	factor	2,	autophagy	regulator
UPF0242	PF06785.11	gi|345006895|ref|YP_004809747.1|	-	7.3	6.6	7.8	2.4	8.2	5.0	1.6	2	0	0	2	2	1	0	Uncharacterised	protein	family	(UPF0242)	N-terminus
PglZ	PF08665.12	gi|345006896|ref|YP_004809748.1|	-	0.078	13.1	0.0	0.32	11.1	0.0	1.8	2	0	0	2	2	2	0	PglZ	domain
DDE_Tnp_1	PF01609.21	gi|345006897|ref|YP_004809749.1|	-	0.031	13.9	0.1	0.085	12.5	0.1	1.7	1	1	0	1	1	1	0	Transposase	DDE	domain
N6_Mtase	PF02384.16	gi|345006898|ref|YP_004809750.1|	-	7.5e-09	35.3	0.0	0.14	11.3	0.0	3.5	3	0	0	3	3	3	3	N-6	DNA	Methylase
Eco57I	PF07669.11	gi|345006898|ref|YP_004809750.1|	-	1.4e-07	32.0	0.0	5.6e-07	30.0	0.0	2.1	1	0	0	1	1	1	1	Eco57I	restriction-modification	methylase
UPF0020	PF01170.18	gi|345006898|ref|YP_004809750.1|	-	0.013	15.2	0.0	6.7	6.3	0.0	2.8	2	1	1	3	3	3	0	Putative	RNA	methylase	family	UPF0020
OmpH	PF03938.14	gi|345006898|ref|YP_004809750.1|	-	1.1	9.6	5.2	1.9	8.8	0.3	3.2	3	0	0	3	3	3	0	Outer	membrane	protein	(OmpH-like)
Helicase_C	PF00271.31	gi|345006899|ref|YP_004809751.1|	-	1.9e-16	60.4	2.2	1.5e-14	54.2	0.0	3.7	4	1	1	5	5	5	1	Helicase	conserved	C-terminal	domain
PLDc_2	PF13091.6	gi|345006899|ref|YP_004809751.1|	-	2.8e-14	53.1	0.0	2.2e-13	50.2	0.0	2.4	2	0	0	2	2	2	1	PLD-like	domain
SNF2_N	PF00176.23	gi|345006899|ref|YP_004809751.1|	-	4.1e-12	45.5	0.0	1.3e-07	30.7	0.1	2.4	2	0	0	2	2	2	2	SNF2	family	N-terminal	domain
ResIII	PF04851.15	gi|345006899|ref|YP_004809751.1|	-	2.8e-10	40.5	0.0	2e-09	37.7	0.0	2.5	2	1	0	2	2	2	1	Type	III	restriction	enzyme,	res	subunit
DUF2075	PF09848.9	gi|345006899|ref|YP_004809751.1|	-	0.00023	20.5	0.2	0.00098	18.5	0.0	2.1	2	0	0	2	2	2	1	Uncharacterized	conserved	protein	(DUF2075)
SWI2_SNF2	PF18766.1	gi|345006899|ref|YP_004809751.1|	-	0.00055	19.7	0.3	0.0015	18.2	0.3	1.6	1	1	0	1	1	1	1	SWI2/SNF2	ATPase
AAA_22	PF13401.6	gi|345006899|ref|YP_004809751.1|	-	0.15	12.4	0.0	1.1	9.6	0.0	2.5	1	1	1	2	2	2	0	AAA	domain
Glycos_transf_1	PF00534.20	gi|345006899|ref|YP_004809751.1|	-	0.21	11.1	3.2	3.1	7.3	0.2	2.6	2	0	0	2	2	2	0	Glycosyl	transferases	group	1
Osmo_CC	PF08946.10	gi|345006900|ref|YP_004809752.1|	-	0.094	13.0	0.7	0.17	12.1	0.7	1.4	1	0	0	1	1	1	0	Osmosensory	transporter	coiled	coil
Img2	PF05046.14	gi|345006900|ref|YP_004809752.1|	-	0.13	12.6	0.2	0.18	12.1	0.2	1.3	1	1	0	1	1	1	0	Mitochondrial	large	subunit	ribosomal	protein	(Img2)
DZR	PF12773.7	gi|345006901|ref|YP_004809753.1|	-	0.026	14.5	0.1	0.051	13.6	0.1	1.4	1	0	0	1	1	1	0	Double	zinc	ribbon
RNA_POL_M_15KD	PF02150.16	gi|345006903|ref|YP_004809755.1|	-	0.12	12.3	1.5	0.26	11.2	1.5	1.5	1	0	0	1	1	1	0	RNA	polymerases	M/15	Kd	subunit
VWA_2	PF13519.6	gi|345006904|ref|YP_004809756.1|	-	5.1e-07	30.3	0.1	1.1e-06	29.2	0.1	1.5	1	0	0	1	1	1	1	von	Willebrand	factor	type	A	domain
VWA	PF00092.28	gi|345006904|ref|YP_004809756.1|	-	1.9e-06	28.3	0.1	2.6e-06	27.8	0.1	1.4	1	0	0	1	1	1	1	von	Willebrand	factor	type	A	domain
Lactamase_B_2	PF12706.7	gi|345006905|ref|YP_004809757.1|	-	2.1e-08	33.9	2.4	2.1e-08	33.9	2.4	2.2	3	0	0	3	3	3	1	Beta-lactamase	superfamily	domain
Lactamase_B	PF00753.27	gi|345006905|ref|YP_004809757.1|	-	1.4e-06	28.5	8.7	4.6e-06	26.8	8.7	1.9	1	0	0	1	1	1	1	Metallo-beta-lactamase	superfamily
SAPS	PF04499.15	gi|345006905|ref|YP_004809757.1|	-	0.75	8.5	5.1	0.99	8.1	5.1	1.3	1	0	0	1	1	1	0	SIT4	phosphatase-associated	protein
SDA1	PF05285.12	gi|345006905|ref|YP_004809757.1|	-	5.8	6.2	19.0	8.4	5.7	19.0	1.1	1	0	0	1	1	1	0	SDA1
Rrf2	PF02082.20	gi|345006906|ref|YP_004809758.1|	-	0.0012	19.1	0.0	0.0017	18.7	0.0	1.1	1	0	0	1	1	1	1	Transcriptional	regulator
SCNM1_acidic	PF15805.5	gi|345006906|ref|YP_004809758.1|	-	0.0063	16.2	0.1	0.0063	16.2	0.1	1.9	2	0	0	2	2	2	1	Acidic	C-terminal	region	of	sodium	channel	modifier	1	SCNM1
BLACT_WH	PF17778.1	gi|345006906|ref|YP_004809758.1|	-	0.042	13.9	0.0	0.09	12.8	0.0	1.5	1	0	0	1	1	1	0	Beta-lactamase	associated	winged	helix	domain
HTH_Crp_2	PF13545.6	gi|345006906|ref|YP_004809758.1|	-	0.093	12.7	0.0	0.13	12.3	0.0	1.2	1	0	0	1	1	1	0	Crp-like	helix-turn-helix	domain
GntR	PF00392.21	gi|345006906|ref|YP_004809758.1|	-	0.11	12.2	0.0	0.14	11.8	0.0	1.2	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	gntR	family
HTH_5	PF01022.20	gi|345006906|ref|YP_004809758.1|	-	0.16	11.8	0.1	0.28	11.1	0.1	1.2	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
DDE_Tnp_1	PF01609.21	gi|345006907|ref|YP_004809759.1|	-	0.031	13.9	0.1	0.085	12.5	0.1	1.7	1	1	0	1	1	1	0	Transposase	DDE	domain
CoiA	PF06054.11	gi|345006908|ref|YP_004809760.1|	-	1.4e-08	34.3	0.0	1.9e-08	33.9	0.0	1.1	1	0	0	1	1	1	1	Competence	protein	CoiA-like	family
Zn_Tnp_IS1	PF03811.13	gi|345006908|ref|YP_004809760.1|	-	0.068	12.9	0.2	0.15	11.8	0.2	1.5	1	0	0	1	1	1	0	InsA	N-terminal	domain
HSDR_N_2	PF13588.6	gi|345006909|ref|YP_004809761.1|	-	2e-08	34.2	0.0	4.9e-08	33.0	0.0	1.6	1	0	0	1	1	1	1	Type	I	restriction	enzyme	R	protein	N	terminus	(HSDR_N)
HSDR_N	PF04313.14	gi|345006909|ref|YP_004809761.1|	-	6.4e-06	26.2	2.5	7.2e-06	26.1	0.2	2.0	2	0	0	2	2	2	1	Type	I	restriction	enzyme	R	protein	N	terminus	(HSDR_N)
PDDEXK_3	PF13366.6	gi|345006909|ref|YP_004809761.1|	-	0.0062	16.9	0.0	0.012	16.0	0.0	1.5	1	0	0	1	1	1	1	PD-(D/E)XK	nuclease	superfamily
AAA_23	PF13476.6	gi|345006909|ref|YP_004809761.1|	-	0.065	13.7	1.3	0.1	13.1	1.3	1.3	1	0	0	1	1	1	0	AAA	domain
AAA_12	PF13087.6	gi|345006911|ref|YP_004809763.1|	-	3.9e-37	127.8	0.0	7.1e-37	127.0	0.0	1.4	1	0	0	1	1	1	1	AAA	domain
AAA_11	PF13086.6	gi|345006911|ref|YP_004809763.1|	-	2.4e-34	119.3	2.9	3.7e-34	118.7	2.9	1.3	1	0	0	1	1	1	1	AAA	domain
AAA_30	PF13604.6	gi|345006911|ref|YP_004809763.1|	-	1.8e-12	47.4	2.6	7.1e-08	32.4	0.1	2.4	1	1	1	2	2	2	2	AAA	domain
AAA_19	PF13245.6	gi|345006911|ref|YP_004809763.1|	-	9e-10	39.1	1.3	2.5e-08	34.4	1.4	3.1	3	1	0	3	3	2	1	AAA	domain
Viral_helicase1	PF01443.18	gi|345006911|ref|YP_004809763.1|	-	3.3e-07	30.3	0.1	0.62	9.7	0.0	3.6	3	0	0	3	3	3	3	Viral	(Superfamily	1)	RNA	helicase
Helicase_RecD	PF05127.14	gi|345006911|ref|YP_004809763.1|	-	1.3e-06	28.4	0.2	0.021	14.7	0.0	2.4	2	0	0	2	2	2	2	Helicase
MobB	PF03205.14	gi|345006911|ref|YP_004809763.1|	-	0.00042	20.2	0.3	0.0016	18.3	0.1	2.0	2	0	0	2	2	1	1	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
AAA_5	PF07728.14	gi|345006911|ref|YP_004809763.1|	-	0.00094	19.2	0.0	0.002	18.1	0.0	1.5	1	0	0	1	1	1	1	AAA	domain	(dynein-related	subfamily)
UvrD-helicase	PF00580.21	gi|345006911|ref|YP_004809763.1|	-	0.0013	18.3	3.2	0.0027	17.3	2.2	1.7	1	1	1	2	2	2	1	UvrD/REP	helicase	N-terminal	domain
2-oxoacid_dh	PF00198.23	gi|345006911|ref|YP_004809763.1|	-	0.0015	18.1	0.0	0.0026	17.2	0.0	1.3	1	0	0	1	1	1	1	2-oxoacid	dehydrogenases	acyltransferase	(catalytic	domain)
SRP54	PF00448.22	gi|345006911|ref|YP_004809763.1|	-	0.0023	17.6	0.1	0.0079	15.8	0.0	1.9	2	0	0	2	2	2	1	SRP54-type	protein,	GTPase	domain
ResIII	PF04851.15	gi|345006911|ref|YP_004809763.1|	-	0.0024	17.9	0.0	0.012	15.7	0.0	2.1	1	1	0	1	1	1	1	Type	III	restriction	enzyme,	res	subunit
AAA_16	PF13191.6	gi|345006911|ref|YP_004809763.1|	-	0.0029	18.0	0.0	0.0073	16.7	0.0	1.7	1	0	0	1	1	1	1	AAA	ATPase	domain
Spc7	PF08317.11	gi|345006911|ref|YP_004809763.1|	-	0.0034	16.3	7.9	0.0063	15.4	7.9	1.3	1	0	0	1	1	1	1	Spc7	kinetochore	protein
DUF4407	PF14362.6	gi|345006911|ref|YP_004809763.1|	-	0.0035	16.7	3.1	0.0059	16.0	3.1	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4407)
DnaB_C	PF03796.15	gi|345006911|ref|YP_004809763.1|	-	0.0043	16.4	0.2	0.012	14.9	0.2	1.8	1	1	0	1	1	1	1	DnaB-like	helicase	C	terminal	domain
Zeta_toxin	PF06414.12	gi|345006911|ref|YP_004809763.1|	-	0.0056	16.0	0.0	0.012	14.9	0.0	1.5	1	0	0	1	1	1	1	Zeta	toxin
ATPase_2	PF01637.18	gi|345006911|ref|YP_004809763.1|	-	0.0067	16.4	0.0	0.014	15.3	0.0	1.5	1	0	0	1	1	1	1	ATPase	domain	predominantly	from	Archaea
AAA_22	PF13401.6	gi|345006911|ref|YP_004809763.1|	-	0.0091	16.3	0.2	0.049	13.9	0.0	2.3	3	1	0	3	3	1	1	AAA	domain
AAA_25	PF13481.6	gi|345006911|ref|YP_004809763.1|	-	0.011	15.4	0.0	0.025	14.2	0.0	1.6	1	0	0	1	1	1	0	AAA	domain
UPF0242	PF06785.11	gi|345006911|ref|YP_004809763.1|	-	0.011	15.9	6.5	0.017	15.2	6.5	1.3	1	0	0	1	1	1	0	Uncharacterised	protein	family	(UPF0242)	N-terminus
AAA_33	PF13671.6	gi|345006911|ref|YP_004809763.1|	-	0.015	15.5	0.0	0.049	13.8	0.0	1.9	2	0	0	2	2	1	0	AAA	domain
DUF2075	PF09848.9	gi|345006911|ref|YP_004809763.1|	-	0.017	14.4	1.7	0.62	9.2	1.7	2.2	1	1	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2075)
AAA	PF00004.29	gi|345006911|ref|YP_004809763.1|	-	0.018	15.5	0.1	0.072	13.5	0.1	2.1	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
DZR	PF12773.7	gi|345006911|ref|YP_004809763.1|	-	0.019	15.0	1.1	0.039	14.0	1.1	1.4	1	0	0	1	1	1	0	Double	zinc	ribbon
MAD	PF05557.13	gi|345006911|ref|YP_004809763.1|	-	0.021	13.2	5.2	0.03	12.7	5.2	1.1	1	0	0	1	1	1	0	Mitotic	checkpoint	protein
OmpH	PF03938.14	gi|345006911|ref|YP_004809763.1|	-	0.022	15.1	5.5	0.044	14.1	5.5	1.4	1	0	0	1	1	1	0	Outer	membrane	protein	(OmpH-like)
MMR_HSR1	PF01926.23	gi|345006911|ref|YP_004809763.1|	-	0.025	14.7	0.2	20	5.3	0.0	3.2	3	0	0	3	3	3	0	50S	ribosome-binding	GTPase
DivIC	PF04977.15	gi|345006911|ref|YP_004809763.1|	-	0.027	14.3	0.6	0.027	14.3	0.6	2.3	2	0	0	2	2	2	0	Septum	formation	initiator
AAA_18	PF13238.6	gi|345006911|ref|YP_004809763.1|	-	0.038	14.6	0.0	0.13	12.8	0.0	2.0	1	0	0	1	1	1	0	AAA	domain
zinc_ribbon_15	PF17032.5	gi|345006911|ref|YP_004809763.1|	-	0.079	13.7	0.7	0.19	12.5	0.7	1.6	1	0	0	1	1	1	0	zinc-ribbon	family
NTPase_1	PF03266.15	gi|345006911|ref|YP_004809763.1|	-	0.097	12.6	0.0	0.23	11.4	0.0	1.6	1	0	0	1	1	1	0	NTPase
ABC_tran	PF00005.27	gi|345006911|ref|YP_004809763.1|	-	0.1	13.1	0.6	0.39	11.2	0.6	2.1	1	1	0	1	1	1	0	ABC	transporter
cobW	PF02492.19	gi|345006911|ref|YP_004809763.1|	-	0.11	12.1	0.0	0.22	11.1	0.0	1.5	1	0	0	1	1	1	0	CobW/HypB/UreG,	nucleotide-binding	domain
UvrD_C_2	PF13538.6	gi|345006911|ref|YP_004809763.1|	-	0.11	12.4	0.0	0.35	10.7	0.0	1.9	2	0	0	2	2	1	0	UvrD-like	helicase	C-terminal	domain
AAA_17	PF13207.6	gi|345006911|ref|YP_004809763.1|	-	0.15	12.5	1.0	0.53	10.7	0.0	2.4	1	1	0	2	2	2	0	AAA	domain
KTI12	PF08433.10	gi|345006911|ref|YP_004809763.1|	-	0.16	11.4	1.1	0.38	10.2	0.0	2.1	3	0	0	3	3	2	0	Chromatin	associated	protein	KTI12
Lebercilin	PF15619.6	gi|345006911|ref|YP_004809763.1|	-	0.18	11.4	6.6	0.33	10.6	6.6	1.3	1	0	0	1	1	1	0	Ciliary	protein	causing	Leber	congenital	amaurosis	disease
C1_2	PF03107.16	gi|345006911|ref|YP_004809763.1|	-	0.18	12.1	1.8	0.39	11.1	1.8	1.5	1	0	0	1	1	1	0	C1	domain
AAA_23	PF13476.6	gi|345006911|ref|YP_004809763.1|	-	0.29	11.6	3.8	5.6	7.4	4.0	2.2	2	0	0	2	2	2	0	AAA	domain
PRKG1_interact	PF15898.5	gi|345006911|ref|YP_004809763.1|	-	0.3	12.0	5.8	0.92	10.4	5.8	1.8	1	0	0	1	1	1	0	cGMP-dependent	protein	kinase	interacting	domain
zf-HIT	PF04438.16	gi|345006911|ref|YP_004809763.1|	-	0.32	10.9	3.3	0.57	10.1	3.3	1.4	1	0	0	1	1	1	0	HIT	zinc	finger
Cwf_Cwc_15	PF04889.12	gi|345006911|ref|YP_004809763.1|	-	0.43	10.3	6.4	0.58	9.9	5.6	1.6	1	1	0	1	1	1	0	Cwf15/Cwc15	cell	cycle	control	protein
DHR10	PF18595.1	gi|345006911|ref|YP_004809763.1|	-	0.45	10.6	11.3	1.8	8.6	0.9	2.6	1	1	1	2	2	2	0	Designed	helical	repeat	protein	10	domain
zinc_ribbon_2	PF13240.6	gi|345006911|ref|YP_004809763.1|	-	0.48	10.2	3.3	1.1	9.0	3.3	1.7	1	0	0	1	1	1	0	zinc-ribbon	domain
Atg14	PF10186.9	gi|345006911|ref|YP_004809763.1|	-	0.5	9.4	3.7	0.81	8.7	3.7	1.2	1	0	0	1	1	1	0	Vacuolar	sorting	38	and	autophagy-related	subunit	14
ISG65-75	PF11727.8	gi|345006911|ref|YP_004809763.1|	-	0.52	9.5	4.8	0.93	8.7	4.8	1.3	1	0	0	1	1	1	0	Invariant	surface	glycoprotein
HAUS-augmin3	PF14932.6	gi|345006911|ref|YP_004809763.1|	-	0.6	9.7	9.2	0.14	11.7	5.8	1.6	2	0	0	2	2	1	0	HAUS	augmin-like	complex	subunit	3
Zn-ribbon_8	PF09723.10	gi|345006911|ref|YP_004809763.1|	-	1.2	9.4	4.4	2.3	8.4	0.7	2.5	1	1	1	2	2	2	0	Zinc	ribbon	domain
zf-C2H2	PF00096.26	gi|345006911|ref|YP_004809763.1|	-	1.7	9.3	4.0	1.7	9.3	0.1	2.8	3	0	0	3	3	2	0	Zinc	finger,	C2H2	type
TolA_bind_tri	PF16331.5	gi|345006911|ref|YP_004809763.1|	-	1.9	8.6	6.0	1.2	9.2	0.9	2.5	2	0	0	2	2	2	0	TolA	binding	protein	trimerisation
DUF848	PF05852.11	gi|345006911|ref|YP_004809763.1|	-	2.4	8.3	7.2	0.52	10.4	1.9	2.3	1	1	0	2	2	2	0	Gammaherpesvirus	protein	of	unknown	function	(DUF848)
Cnn_1N	PF07989.11	gi|345006911|ref|YP_004809763.1|	-	6.6	7.0	6.2	33	4.7	5.7	2.2	1	1	0	1	1	1	0	Centrosomin	N-terminal	motif	1
CENP-Q	PF13094.6	gi|345006911|ref|YP_004809763.1|	-	7.6	6.7	11.5	1.6e+02	2.4	11.2	2.6	1	1	0	1	1	1	0	CENP-Q,	a	CENPA-CAD	centromere	complex	subunit
DDE_Tnp_IS240	PF13610.6	gi|345006912|ref|YP_004809764.1|	-	1.2e-30	106.6	0.0	1.8e-30	106.0	0.0	1.3	1	0	0	1	1	1	1	DDE	domain
rve_3	PF13683.6	gi|345006912|ref|YP_004809764.1|	-	5.9e-10	38.8	1.7	8.2e-10	38.3	0.6	1.8	2	0	0	2	2	2	1	Integrase	core	domain
DDE_Tnp_IS66	PF03050.14	gi|345006912|ref|YP_004809764.1|	-	0.013	15.0	0.1	0.028	13.9	0.1	1.6	1	1	0	1	1	1	0	Transposase	IS66	family
rve_2	PF13333.6	gi|345006912|ref|YP_004809764.1|	-	0.034	14.3	0.0	0.073	13.3	0.0	1.6	1	0	0	1	1	1	0	Integrase	core	domain
rve	PF00665.26	gi|345006912|ref|YP_004809764.1|	-	0.039	14.1	0.1	0.11	12.7	0.1	2.0	1	1	0	1	1	1	0	Integrase	core	domain
DUF2384	PF09722.10	gi|345006912|ref|YP_004809764.1|	-	0.095	12.8	1.0	3.6	7.7	0.0	2.9	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF2384)
CBS	PF00571.28	gi|345006913|ref|YP_004809765.1|	-	0.00016	22.1	0.0	0.035	14.6	0.0	2.8	2	0	0	2	2	2	2	CBS	domain
NETI	PF14044.6	gi|345006913|ref|YP_004809765.1|	-	0.11	12.3	0.0	0.61	9.9	0.0	2.1	2	0	0	2	2	2	0	NETI	protein
HBS1_N	PF08938.10	gi|345006915|ref|YP_004809767.1|	-	0.019	15.3	0.2	0.021	15.1	0.2	1.1	1	0	0	1	1	1	0	HBS1	N-terminus
Phage_tail_APC	PF16778.5	gi|345006915|ref|YP_004809767.1|	-	0.049	13.5	0.1	0.053	13.4	0.1	1.2	1	0	0	1	1	1	0	Phage	tail	assembly	chaperone	protein
ADP_ribosyl_GH	PF03747.14	gi|345006916|ref|YP_004809768.1|	-	9.3e-70	235.6	5.4	1.1e-69	235.4	5.4	1.1	1	0	0	1	1	1	1	ADP-ribosylglycohydrolase
Gly-zipper_YMGG	PF13441.6	gi|345006916|ref|YP_004809768.1|	-	0.018	14.7	2.3	0.16	11.7	2.3	2.2	2	0	0	2	2	2	0	YMGG-like	Gly-zipper
SurE	PF01975.17	gi|345006916|ref|YP_004809768.1|	-	0.16	11.8	0.1	0.22	11.3	0.1	1.3	1	0	0	1	1	1	0	Survival	protein	SurE
Gly-zipper_OmpA	PF13436.6	gi|345006916|ref|YP_004809768.1|	-	0.61	9.9	5.4	0.17	11.7	1.5	2.0	2	0	0	2	2	2	0	Glycine-zipper	domain
Rick_17kDa_Anti	PF05433.15	gi|345006916|ref|YP_004809768.1|	-	0.79	9.6	7.1	0.17	11.8	2.6	2.2	3	0	0	3	3	3	0	Glycine	zipper	2TM	domain
DDE_Tnp_1	PF01609.21	gi|345006917|ref|YP_004809769.1|	-	0.031	13.9	0.1	0.085	12.5	0.1	1.7	1	1	0	1	1	1	0	Transposase	DDE	domain
DDE_Tnp_1	PF01609.21	gi|345006918|ref|YP_004809770.1|	-	4.1e-15	56.0	3.9	1.2e-14	54.5	3.9	1.7	1	1	0	1	1	1	1	Transposase	DDE	domain
DUF772	PF05598.11	gi|345006918|ref|YP_004809770.1|	-	0.00052	20.0	0.1	0.0015	18.5	0.1	1.8	1	0	0	1	1	1	1	Transposase	domain	(DUF772)
DDE_Tnp_1_2	PF13586.6	gi|345006918|ref|YP_004809770.1|	-	0.049	14.0	0.9	0.098	13.0	0.3	1.8	2	0	0	2	2	2	0	Transposase	DDE	domain
Usp	PF00582.26	gi|345006919|ref|YP_004809771.1|	-	5.3e-31	108.0	0.2	6.1e-31	107.8	0.2	1.1	1	0	0	1	1	1	1	Universal	stress	protein	family
DUF3482	PF11981.8	gi|345006921|ref|YP_004809773.1|	-	0.2	11.0	10.8	0.23	10.8	10.8	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3482)
Bacteriocin_IIc	PF10439.9	gi|345006921|ref|YP_004809773.1|	-	0.43	10.7	13.0	0.56	10.4	13.0	1.2	1	0	0	1	1	1	0	Bacteriocin	class	II	with	double-glycine	leader	peptide
Fusion_gly	PF00523.18	gi|345006921|ref|YP_004809773.1|	-	0.55	8.4	3.2	4.9	5.3	0.3	2.0	2	0	0	2	2	2	0	Fusion	glycoprotein	F0
ATPase_gene1	PF09527.10	gi|345006921|ref|YP_004809773.1|	-	3	8.1	12.7	9.9	6.4	12.8	1.7	1	1	0	1	1	1	0	Putative	F0F1-ATPase	subunit	Ca2+/Mg2+	transporter
Gly-zipper_YMGG	PF13441.6	gi|345006921|ref|YP_004809773.1|	-	4.7	7.0	22.1	18	5.2	22.3	1.7	1	1	0	1	1	1	0	YMGG-like	Gly-zipper
DUF2273	PF10031.9	gi|345006921|ref|YP_004809773.1|	-	6.9	6.8	12.0	10	6.2	12.0	1.2	1	0	0	1	1	1	0	Small	integral	membrane	protein	(DUF2273)
PIN_12	PF16289.5	gi|345006922|ref|YP_004809774.1|	-	0.011	16.2	0.0	4.5	7.7	0.0	2.1	2	0	0	2	2	2	0	PIN	domain
PIN_4	PF13638.6	gi|345006922|ref|YP_004809774.1|	-	0.079	13.2	0.0	0.15	12.3	0.0	1.4	1	1	0	1	1	1	0	PIN	domain
DUF4876	PF16215.5	gi|345006922|ref|YP_004809774.1|	-	0.25	11.3	1.2	0.34	10.9	0.1	1.7	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF4876)
TrmB	PF01978.19	gi|345006923|ref|YP_004809775.1|	-	1.6e-07	31.1	0.0	3.1e-07	30.2	0.0	1.4	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_IclR	PF09339.10	gi|345006923|ref|YP_004809775.1|	-	6.3e-06	25.9	0.0	2.4e-05	24.1	0.0	2.0	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
HTH_11	PF08279.12	gi|345006923|ref|YP_004809775.1|	-	0.0077	16.1	0.0	0.014	15.4	0.0	1.5	1	0	0	1	1	1	1	HTH	domain
HTH_20	PF12840.7	gi|345006923|ref|YP_004809775.1|	-	0.017	15.1	0.8	0.039	14.0	0.2	2.0	2	0	0	2	2	2	0	Helix-turn-helix	domain
MazE_antitoxin	PF04014.18	gi|345006924|ref|YP_004809776.1|	-	0.11	12.5	0.0	0.2	11.6	0.0	1.5	1	1	0	1	1	1	0	Antidote-toxin	recognition	MazE,	bacterial	antitoxin
DUF3268	PF11672.8	gi|345006925|ref|YP_004809777.1|	-	0.064	13.6	1.6	0.16	12.3	0.2	1.9	2	0	0	2	2	2	0	zinc-finger-containing	domain
Ribosomal_L32p	PF01783.23	gi|345006925|ref|YP_004809777.1|	-	0.073	13.3	2.7	0.58	10.5	0.1	2.5	1	1	1	2	2	2	0	Ribosomal	L32p	protein	family
Resolvase	PF00239.21	gi|345006926|ref|YP_004809778.1|	-	4.3e-22	78.8	6.7	6e-22	78.3	6.7	1.1	1	0	0	1	1	1	1	Resolvase,	N	terminal	domain
SseB_C	PF14581.6	gi|345006926|ref|YP_004809778.1|	-	0.081	13.0	0.0	0.13	12.4	0.0	1.4	1	0	0	1	1	1	0	SseB	protein	C-terminal	domain
Trp_repressor	PF01371.19	gi|345006926|ref|YP_004809778.1|	-	0.1	12.8	0.1	3.4	7.9	0.0	2.4	2	0	0	2	2	2	0	Trp	repressor	protein
Polysacc_deac_1	PF01522.21	gi|345006926|ref|YP_004809778.1|	-	0.12	12.3	0.0	0.26	11.2	0.0	1.6	1	1	0	1	1	1	0	Polysaccharide	deacetylase
T2SSF	PF00482.23	gi|345006926|ref|YP_004809778.1|	-	0.15	12.0	0.6	4.4	7.3	0.0	2.4	3	0	0	3	3	3	0	Type	II	secretion	system	(T2SS),	protein	F
OEP	PF02321.18	gi|345006926|ref|YP_004809778.1|	-	0.18	11.6	1.4	4.8	6.9	0.1	2.3	2	0	0	2	2	2	0	Outer	membrane	efflux	protein
AAA_5	PF07728.14	gi|345006929|ref|YP_004809781.1|	-	1e-17	64.4	0.0	2.2e-17	63.4	0.0	1.6	1	0	0	1	1	1	1	AAA	domain	(dynein-related	subfamily)
AAA	PF00004.29	gi|345006929|ref|YP_004809781.1|	-	4.7e-07	30.3	0.0	1.2e-06	29.0	0.0	1.7	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_7	PF12775.7	gi|345006929|ref|YP_004809781.1|	-	3.5e-06	26.7	0.0	0.00054	19.5	0.0	2.3	2	0	0	2	2	2	1	P-loop	containing	dynein	motor	region
AAA_3	PF07726.11	gi|345006929|ref|YP_004809781.1|	-	7.5e-06	25.8	0.0	2.9e-05	23.9	0.0	1.9	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
TsaE	PF02367.17	gi|345006929|ref|YP_004809781.1|	-	5.7e-05	23.1	0.0	0.00016	21.7	0.0	1.7	1	0	0	1	1	1	1	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
AAA_33	PF13671.6	gi|345006929|ref|YP_004809781.1|	-	0.00012	22.2	0.0	0.00019	21.6	0.0	1.5	1	0	0	1	1	1	1	AAA	domain
AAA_22	PF13401.6	gi|345006929|ref|YP_004809781.1|	-	0.00027	21.2	0.0	0.00073	19.8	0.0	1.7	1	1	0	1	1	1	1	AAA	domain
AAA_18	PF13238.6	gi|345006929|ref|YP_004809781.1|	-	0.00031	21.3	0.0	0.00079	20.0	0.0	1.8	1	0	0	1	1	1	1	AAA	domain
ABC_tran	PF00005.27	gi|345006929|ref|YP_004809781.1|	-	0.00047	20.7	0.0	0.0013	19.2	0.0	1.7	1	1	0	1	1	1	1	ABC	transporter
AAA_25	PF13481.6	gi|345006929|ref|YP_004809781.1|	-	0.00049	19.7	0.0	0.0015	18.2	0.0	1.8	1	0	0	1	1	1	1	AAA	domain
AAA_16	PF13191.6	gi|345006929|ref|YP_004809781.1|	-	0.00089	19.7	0.0	0.0054	17.1	0.0	2.3	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_6	PF12774.7	gi|345006929|ref|YP_004809781.1|	-	0.0014	17.7	1.8	0.6	9.0	0.3	2.7	3	0	0	3	3	3	2	Hydrolytic	ATP	binding	site	of	dynein	motor	region
AAA_24	PF13479.6	gi|345006929|ref|YP_004809781.1|	-	0.0015	18.3	2.1	0.0027	17.5	0.5	2.0	2	0	0	2	2	2	1	AAA	domain
RNA_helicase	PF00910.22	gi|345006929|ref|YP_004809781.1|	-	0.0022	18.4	0.0	0.0045	17.4	0.0	1.5	1	0	0	1	1	1	1	RNA	helicase
RuvB_N	PF05496.12	gi|345006929|ref|YP_004809781.1|	-	0.0026	17.5	1.7	0.0071	16.1	0.0	2.3	3	0	0	3	3	3	1	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
NACHT	PF05729.12	gi|345006929|ref|YP_004809781.1|	-	0.0044	17.0	0.2	0.032	14.1	0.1	2.1	2	0	0	2	2	2	1	NACHT	domain
AAA_14	PF13173.6	gi|345006929|ref|YP_004809781.1|	-	0.0048	16.9	0.1	0.024	14.7	0.1	2.3	1	1	0	1	1	1	1	AAA	domain
IPT	PF01745.16	gi|345006929|ref|YP_004809781.1|	-	0.0055	16.1	0.1	0.01	15.2	0.1	1.4	1	0	0	1	1	1	1	Isopentenyl	transferase
Sigma54_activat	PF00158.26	gi|345006929|ref|YP_004809781.1|	-	0.0091	15.7	0.0	0.032	14.0	0.0	1.9	2	0	0	2	2	2	1	Sigma-54	interaction	domain
AAA_30	PF13604.6	gi|345006929|ref|YP_004809781.1|	-	0.0095	15.7	0.0	0.02	14.6	0.0	1.5	1	0	0	1	1	1	1	AAA	domain
ATPase_2	PF01637.18	gi|345006929|ref|YP_004809781.1|	-	0.011	15.6	0.2	0.033	14.1	0.0	1.8	2	0	0	2	2	2	0	ATPase	domain	predominantly	from	Archaea
AAA_28	PF13521.6	gi|345006929|ref|YP_004809781.1|	-	0.012	15.9	0.2	0.012	15.9	0.2	2.1	2	0	0	2	2	2	0	AAA	domain
Mg_chelatase	PF01078.21	gi|345006929|ref|YP_004809781.1|	-	0.017	14.5	0.0	0.049	13.0	0.0	1.6	2	0	0	2	2	2	0	Magnesium	chelatase,	subunit	ChlI
IstB_IS21	PF01695.17	gi|345006929|ref|YP_004809781.1|	-	0.045	13.5	0.1	0.13	12.0	0.1	1.7	2	0	0	2	2	1	0	IstB-like	ATP	binding	protein
Kinesin	PF00225.23	gi|345006929|ref|YP_004809781.1|	-	0.052	12.5	0.0	6.6	5.6	0.0	2.3	2	0	0	2	2	2	0	Kinesin	motor	domain
Cytidylate_kin	PF02224.18	gi|345006929|ref|YP_004809781.1|	-	0.061	13.0	0.4	0.12	12.1	0.0	1.7	2	0	0	2	2	1	0	Cytidylate	kinase
T2SSE	PF00437.20	gi|345006929|ref|YP_004809781.1|	-	0.078	12.0	0.0	0.13	11.3	0.0	1.3	1	0	0	1	1	1	0	Type	II/IV	secretion	system	protein
Rad17	PF03215.15	gi|345006929|ref|YP_004809781.1|	-	0.13	12.1	0.0	0.27	11.1	0.0	1.4	1	0	0	1	1	1	0	Rad17	P-loop	domain
PhoH	PF02562.16	gi|345006929|ref|YP_004809781.1|	-	0.14	11.6	0.0	0.36	10.3	0.0	1.6	1	0	0	1	1	1	0	PhoH-like	protein
Sigma54_activ_2	PF14532.6	gi|345006929|ref|YP_004809781.1|	-	0.15	12.2	0.0	0.27	11.3	0.0	1.3	1	0	0	1	1	1	0	Sigma-54	interaction	domain
AAA_23	PF13476.6	gi|345006929|ref|YP_004809781.1|	-	0.16	12.4	0.2	0.91	10.0	0.0	2.1	2	0	0	2	2	2	0	AAA	domain
McrBC	PF10117.9	gi|345006930|ref|YP_004809782.1|	-	6.2e-09	35.4	0.0	4.2e-08	32.7	0.0	1.9	1	1	0	1	1	1	1	McrBC	5-methylcytosine	restriction	system	component
TrmB	PF01978.19	gi|345006934|ref|YP_004809786.1|	-	0.0016	18.3	0.0	0.068	13.1	0.0	2.3	2	0	0	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
FAD_binding_2	PF00890.24	gi|345006934|ref|YP_004809786.1|	-	0.06	12.4	0.1	0.065	12.3	0.1	1.1	1	0	0	1	1	1	0	FAD	binding	domain
FaeA	PF04703.12	gi|345006934|ref|YP_004809786.1|	-	0.13	12.6	0.0	0.32	11.4	0.0	1.6	1	0	0	1	1	1	0	FaeA-like	protein
NPC1_N	PF16414.5	gi|345006934|ref|YP_004809786.1|	-	0.17	11.5	0.0	0.2	11.2	0.0	1.2	1	0	0	1	1	1	0	Niemann-Pick	C1	N	terminus
DUF1156	PF06634.12	gi|345006936|ref|YP_004809788.1|	-	7.3e-09	35.6	0.0	1.7e-08	34.4	0.0	1.6	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1156)
UPF0020	PF01170.18	gi|345006936|ref|YP_004809788.1|	-	1.9e-07	31.0	0.0	0.028	14.1	0.0	2.5	2	0	0	2	2	2	2	Putative	RNA	methylase	family	UPF0020
MethyltransfD12	PF02086.15	gi|345006936|ref|YP_004809788.1|	-	7.9e-05	22.5	0.2	0.00025	20.8	0.0	1.9	2	0	0	2	2	2	1	D12	class	N6	adenine-specific	DNA	methyltransferase
N6_N4_Mtase	PF01555.18	gi|345006936|ref|YP_004809788.1|	-	0.0002	21.1	0.0	0.032	14.0	0.0	2.3	2	0	0	2	2	2	1	DNA	methylase
Methyltransf_25	PF13649.6	gi|345006936|ref|YP_004809788.1|	-	0.00055	20.6	0.0	4.2	8.1	0.0	3.6	3	0	0	3	3	3	2	Methyltransferase	domain
Cons_hypoth95	PF03602.15	gi|345006936|ref|YP_004809788.1|	-	0.015	14.9	0.0	6	6.5	0.0	2.3	2	0	0	2	2	2	0	Conserved	hypothetical	protein	95
DZR	PF12773.7	gi|345006936|ref|YP_004809788.1|	-	0.016	15.2	9.7	0.64	10.1	2.9	3.0	1	1	1	2	2	2	0	Double	zinc	ribbon
Methyltransf_11	PF08241.12	gi|345006936|ref|YP_004809788.1|	-	0.036	14.7	0.0	14	6.4	0.0	3.4	3	0	0	3	3	3	0	Methyltransferase	domain
DUF1488	PF07369.11	gi|345006936|ref|YP_004809788.1|	-	0.15	12.1	0.1	0.47	10.5	0.0	1.8	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1488)
UPF0515	PF15135.6	gi|345006936|ref|YP_004809788.1|	-	0.28	10.5	2.8	0.53	9.6	2.8	1.4	1	0	0	1	1	1	0	Uncharacterised	protein	UPF0515
TF_Zn_Ribbon	PF08271.12	gi|345006936|ref|YP_004809788.1|	-	1.3	8.6	14.0	2.6	7.6	4.5	3.4	2	1	0	2	2	2	0	TFIIB	zinc-binding
HypA	PF01155.19	gi|345006936|ref|YP_004809788.1|	-	3.2	7.8	11.6	3.9	7.5	3.2	3.0	1	1	2	3	3	3	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
Methyltransf_4	PF02390.17	gi|345006937|ref|YP_004809789.1|	-	0.087	12.3	0.0	0.11	11.9	0.0	1.2	1	0	0	1	1	1	0	Putative	methyltransferase
hNIFK_binding	PF12196.8	gi|345006938|ref|YP_004809790.1|	-	0.031	13.8	0.3	0.059	12.9	0.3	1.5	1	0	0	1	1	1	0	FHA	Ki67	binding	domain	of	hNIFK
DUF499	PF04465.12	gi|345006939|ref|YP_004809791.1|	-	1.1e-10	40.0	0.7	6.9e-06	24.1	0.1	2.5	2	1	0	2	2	2	2	Protein	of	unknown	function	(DUF499)
ECH_2	PF16113.5	gi|345006939|ref|YP_004809791.1|	-	0.067	12.7	0.0	0.13	11.7	0.0	1.4	1	0	0	1	1	1	0	Enoyl-CoA	hydratase/isomerase
SdpI	PF13630.6	gi|345006940|ref|YP_004809792.1|	-	0.02	15.0	0.9	0.034	14.3	0.9	1.3	1	0	0	1	1	1	0	SdpI/YhfL	protein	family
SNF2_N	PF00176.23	gi|345006941|ref|YP_004809793.1|	-	4.9e-35	120.9	0.1	1.1e-34	119.8	0.1	1.5	1	0	0	1	1	1	1	SNF2	family	N-terminal	domain
Helicase_C	PF00271.31	gi|345006941|ref|YP_004809793.1|	-	2.1e-19	69.9	0.0	7.2e-19	68.2	0.0	2.0	1	0	0	1	1	1	1	Helicase	conserved	C-terminal	domain
ResIII	PF04851.15	gi|345006941|ref|YP_004809793.1|	-	1.6e-09	38.0	0.1	6.6e-09	36.0	0.0	2.0	2	0	0	2	2	2	1	Type	III	restriction	enzyme,	res	subunit
DSS1_SEM1	PF05160.13	gi|345006941|ref|YP_004809793.1|	-	0.0029	17.6	0.7	0.013	15.6	0.7	2.1	1	0	0	1	1	1	1	DSS1/SEM1	family
DUF5343	PF17278.2	gi|345006941|ref|YP_004809793.1|	-	0.1	12.7	0.0	0.32	11.1	0.0	1.8	1	0	0	1	1	1	0	Family	of	unknown	function	(DUF5343)
KfrA_N	PF11740.8	gi|345006942|ref|YP_004809794.1|	-	0.00088	19.9	6.9	0.00088	19.9	6.9	2.6	2	1	0	2	2	2	1	Plasmid	replication	region	DNA-binding	N-term
DUF3584	PF12128.8	gi|345006942|ref|YP_004809794.1|	-	0.03	11.8	16.7	0.04	11.5	16.7	1.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3584)
MCM_N	PF14551.6	gi|345006942|ref|YP_004809794.1|	-	0.04	14.5	1.2	0.47	11.1	0.7	2.4	2	0	0	2	2	2	0	MCM	N-terminal	domain
Exonuc_VII_L	PF02601.15	gi|345006942|ref|YP_004809794.1|	-	0.047	13.2	7.9	0.062	12.9	7.9	1.2	1	0	0	1	1	1	0	Exonuclease	VII,	large	subunit
Prominin	PF05478.11	gi|345006942|ref|YP_004809794.1|	-	0.21	9.5	4.3	0.26	9.2	4.3	1.1	1	0	0	1	1	1	0	Prominin
DUF4407	PF14362.6	gi|345006942|ref|YP_004809794.1|	-	0.23	10.8	17.2	0.59	9.4	17.3	1.5	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4407)
Herpes_UL6	PF01763.16	gi|345006942|ref|YP_004809794.1|	-	0.27	9.7	5.6	0.38	9.2	5.6	1.1	1	0	0	1	1	1	0	Herpesvirus	UL6	like
PilJ	PF13675.6	gi|345006942|ref|YP_004809794.1|	-	0.46	10.5	8.9	0.22	11.5	4.3	2.3	1	1	1	2	2	2	0	Type	IV	pili	methyl-accepting	chemotaxis	transducer	N-term
KELK	PF15796.5	gi|345006942|ref|YP_004809794.1|	-	0.69	10.4	15.8	0.56	10.7	12.9	2.3	1	1	1	2	2	2	0	KELK-motif	containing	domain	of	MRCK	Ser/Thr	protein	kinase
Cob_adeno_trans	PF01923.18	gi|345006942|ref|YP_004809794.1|	-	0.81	9.8	4.8	0.68	10.1	2.6	1.8	1	1	0	1	1	1	0	Cobalamin	adenosyltransferase
DUF4200	PF13863.6	gi|345006942|ref|YP_004809794.1|	-	0.9	10.0	18.2	2.1	8.8	18.2	1.7	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4200)
FapA	PF03961.13	gi|345006942|ref|YP_004809794.1|	-	0.97	8.0	11.1	2	6.9	11.1	1.5	1	1	0	1	1	1	0	Flagellar	Assembly	Protein	A
DUF465	PF04325.13	gi|345006942|ref|YP_004809794.1|	-	1.2	9.2	10.6	0.62	10.2	1.8	3.1	1	1	2	3	3	3	0	Protein	of	unknown	function	(DUF465)
Cnn_1N	PF07989.11	gi|345006942|ref|YP_004809794.1|	-	1.8	8.7	12.0	0.96	9.7	9.0	2.2	2	0	0	2	2	2	0	Centrosomin	N-terminal	motif	1
UPF0242	PF06785.11	gi|345006942|ref|YP_004809794.1|	-	2.5	8.2	14.0	4.5	7.3	14.0	1.4	1	0	0	1	1	1	0	Uncharacterised	protein	family	(UPF0242)	N-terminus
DUF16	PF01519.16	gi|345006942|ref|YP_004809794.1|	-	2.7	8.5	9.7	7.6	7.1	9.7	1.9	1	1	0	1	1	1	0	Protein	of	unknown	function	DUF16
Peptidase_S64	PF08192.11	gi|345006942|ref|YP_004809794.1|	-	4	5.8	9.0	5.1	5.4	9.0	1.1	1	0	0	1	1	1	0	Peptidase	family	S64
Aida_N	PF08910.10	gi|345006942|ref|YP_004809794.1|	-	5.5	7.4	7.0	1.4	9.3	0.3	2.7	2	1	1	3	3	2	0	Aida	N-terminus
V_ATPase_I	PF01496.19	gi|345006942|ref|YP_004809794.1|	-	6.3	4.6	6.8	8	4.2	6.8	1.1	1	0	0	1	1	1	0	V-type	ATPase	116kDa	subunit	family
Muted	PF14942.6	gi|345006942|ref|YP_004809794.1|	-	6.4	7.1	18.7	8.8	6.7	14.0	2.3	1	1	2	3	3	3	0	Organelle	biogenesis,	Muted-like	protein
LPP	PF04728.13	gi|345006942|ref|YP_004809794.1|	-	6.5	7.2	10.9	2.8	8.4	0.3	2.7	3	0	0	3	3	2	0	Lipoprotein	leucine-zipper
FemAB	PF02388.16	gi|345006942|ref|YP_004809794.1|	-	7.4	5.3	8.3	8.1	5.2	7.0	1.6	1	1	0	1	1	1	0	FemAB	family
OmpH	PF03938.14	gi|345006942|ref|YP_004809794.1|	-	8	6.8	22.8	2	8.7	8.9	2.3	1	1	1	2	2	2	0	Outer	membrane	protein	(OmpH-like)
Phage_integrase	PF00589.22	gi|345006945|ref|YP_004809797.1|	-	2.4e-10	40.5	0.0	6.3e-10	39.1	0.0	1.7	2	0	0	2	2	2	1	Phage	integrase	family
Phage_int_SAM_1	PF02899.17	gi|345006945|ref|YP_004809797.1|	-	1.7e-05	25.0	6.0	0.0012	19.1	1.1	2.6	2	1	1	3	3	3	2	Phage	integrase,	N-terminal	SAM-like	domain
Phage_int_SAM_4	PF13495.6	gi|345006945|ref|YP_004809797.1|	-	0.00092	19.6	0.1	0.0024	18.3	0.1	1.8	1	0	0	1	1	1	1	Phage	integrase,	N-terminal	SAM-like	domain
Phage_int_SAM_5	PF13102.6	gi|345006945|ref|YP_004809797.1|	-	0.01	16.1	0.1	0.036	14.4	0.0	1.8	2	0	0	2	2	2	0	Phage	integrase	SAM-like	domain
DDE_Tnp_1	PF01609.21	gi|345006946|ref|YP_004809798.1|	-	0.031	13.9	0.1	0.085	12.5	0.1	1.7	1	1	0	1	1	1	0	Transposase	DDE	domain
ATPase_2	PF01637.18	gi|345006948|ref|YP_004809800.1|	-	5.4e-22	78.9	0.0	4.1e-21	76.0	0.0	2.2	1	1	0	1	1	1	1	ATPase	domain	predominantly	from	Archaea
DUF234	PF03008.14	gi|345006948|ref|YP_004809800.1|	-	2.8e-20	72.6	0.0	5.5e-20	71.7	0.0	1.5	1	0	0	1	1	1	1	Archaea	bacterial	proteins	of	unknown	function
AAA_14	PF13173.6	gi|345006948|ref|YP_004809800.1|	-	3.7e-08	33.5	0.0	2e-07	31.1	0.0	2.0	2	0	0	2	2	2	1	AAA	domain
AAA_16	PF13191.6	gi|345006948|ref|YP_004809800.1|	-	3.3e-05	24.3	0.1	0.00012	22.5	0.0	2.1	2	1	0	2	2	2	1	AAA	ATPase	domain
MarR_2	PF12802.7	gi|345006948|ref|YP_004809800.1|	-	0.00069	19.5	0.2	0.016	15.1	0.0	2.7	3	0	0	3	3	3	1	MarR	family
HTH_24	PF13412.6	gi|345006948|ref|YP_004809800.1|	-	0.003	17.1	0.1	0.0054	16.3	0.1	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
AAA_22	PF13401.6	gi|345006948|ref|YP_004809800.1|	-	0.015	15.6	0.0	0.042	14.1	0.0	1.7	1	0	0	1	1	1	0	AAA	domain
TrmB	PF01978.19	gi|345006948|ref|YP_004809800.1|	-	0.021	14.7	0.0	0.057	13.3	0.0	1.7	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
B-block_TFIIIC	PF04182.12	gi|345006948|ref|YP_004809800.1|	-	0.036	14.2	0.0	0.08	13.1	0.0	1.6	1	0	0	1	1	1	0	B-block	binding	subunit	of	TFIIIC
FaeA	PF04703.12	gi|345006948|ref|YP_004809800.1|	-	0.038	14.4	0.1	0.074	13.4	0.1	1.4	1	0	0	1	1	1	0	FaeA-like	protein
HTH_27	PF13463.6	gi|345006948|ref|YP_004809800.1|	-	0.11	13.0	0.2	0.74	10.4	0.0	2.4	3	0	0	3	3	3	0	Winged	helix	DNA-binding	domain
HTH_5	PF01022.20	gi|345006948|ref|YP_004809800.1|	-	0.12	12.2	0.0	0.2	11.5	0.0	1.4	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
CPBP	PF02517.16	gi|345006949|ref|YP_004809801.1|	-	1e-08	35.4	12.0	4.7e-08	33.3	12.0	2.2	1	1	0	1	1	1	1	CPBP	intramembrane	metalloprotease
PHO4	PF01384.20	gi|345006949|ref|YP_004809801.1|	-	0.15	11.0	10.4	0.15	11.0	9.0	1.7	1	1	0	1	1	1	0	Phosphate	transporter	family
DUF4052	PF13261.6	gi|345006949|ref|YP_004809801.1|	-	0.46	10.3	3.9	0.76	9.6	0.8	2.4	2	1	1	3	3	3	0	Protein	of	unknown	function	(DUF4052)
ABC_tran	PF00005.27	gi|345006951|ref|YP_004809803.1|	-	1.9e-29	102.9	0.0	2.6e-29	102.5	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|345006951|ref|YP_004809803.1|	-	9e-13	48.7	0.2	8.1e-09	35.7	0.1	2.1	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_15	PF13175.6	gi|345006951|ref|YP_004809803.1|	-	0.0096	15.7	0.0	4	7.1	0.0	2.1	2	0	0	2	2	2	2	AAA	ATPase	domain
AAA_13	PF13166.6	gi|345006951|ref|YP_004809803.1|	-	0.028	13.1	0.1	2	6.9	0.0	2.1	2	0	0	2	2	2	0	AAA	domain
AAA_23	PF13476.6	gi|345006951|ref|YP_004809803.1|	-	0.039	14.5	0.1	0.077	13.5	0.1	1.4	1	0	0	1	1	1	0	AAA	domain
AAA_30	PF13604.6	gi|345006951|ref|YP_004809803.1|	-	0.051	13.3	0.5	0.092	12.5	0.1	1.6	2	0	0	2	2	2	0	AAA	domain
AAA_22	PF13401.6	gi|345006951|ref|YP_004809803.1|	-	0.073	13.3	0.1	0.32	11.3	0.1	2.2	1	1	0	1	1	1	0	AAA	domain
AAA_16	PF13191.6	gi|345006951|ref|YP_004809803.1|	-	0.095	13.1	0.0	0.19	12.1	0.0	1.6	1	1	0	1	1	1	0	AAA	ATPase	domain
AAA	PF00004.29	gi|345006951|ref|YP_004809803.1|	-	0.097	13.1	0.1	0.46	10.9	0.1	2.1	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
SRP54	PF00448.22	gi|345006951|ref|YP_004809803.1|	-	0.24	11.0	0.7	0.5	10.0	0.7	1.5	1	0	0	1	1	1	0	SRP54-type	protein,	GTPase	domain
DUF3887	PF13026.6	gi|345006953|ref|YP_004809805.1|	-	8.4e-17	61.8	1.9	1.6e-16	60.9	1.9	1.5	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3887)
Hydrolase_4	PF12146.8	gi|345006953|ref|YP_004809805.1|	-	2.8e-13	49.7	0.0	7.3e-13	48.3	0.0	1.7	1	1	0	1	1	1	1	Serine	aminopeptidase,	S33
Abhydrolase_6	PF12697.7	gi|345006953|ref|YP_004809805.1|	-	1.2e-08	35.8	0.0	2.4e-08	34.9	0.0	1.6	1	1	0	1	1	1	1	Alpha/beta	hydrolase	family
Abhydrolase_5	PF12695.7	gi|345006953|ref|YP_004809805.1|	-	3.7e-07	30.1	0.0	9e-07	28.8	0.0	1.6	1	0	0	1	1	1	1	Alpha/beta	hydrolase	family
DLH	PF01738.18	gi|345006953|ref|YP_004809805.1|	-	7.5e-05	22.4	0.0	0.43	10.1	0.0	2.6	2	1	0	2	2	2	2	Dienelactone	hydrolase	family
Abhydrolase_1	PF00561.20	gi|345006953|ref|YP_004809805.1|	-	0.0001	22.1	0.0	0.00018	21.2	0.0	1.4	1	0	0	1	1	1	1	alpha/beta	hydrolase	fold
Abhydrolase_3	PF07859.13	gi|345006953|ref|YP_004809805.1|	-	0.00022	21.1	0.0	0.00049	20.0	0.0	1.5	1	0	0	1	1	1	1	alpha/beta	hydrolase	fold
PGAP1	PF07819.13	gi|345006953|ref|YP_004809805.1|	-	0.015	15.0	0.0	0.03	14.0	0.0	1.5	1	0	0	1	1	1	0	PGAP1-like	protein
DUF4918	PF16265.5	gi|345006953|ref|YP_004809805.1|	-	0.029	13.9	0.0	0.046	13.2	0.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4918)
DUF3558	PF12079.8	gi|345006953|ref|YP_004809805.1|	-	0.06	13.4	2.9	0.12	12.4	2.9	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3558)
TAT_signal	PF10518.9	gi|345006953|ref|YP_004809805.1|	-	0.084	12.7	3.1	0.16	11.9	3.1	1.5	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
DUF4235	PF14019.6	gi|345006954|ref|YP_004809806.1|	-	0.017	15.2	0.7	3.5	7.8	0.3	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF4235)
RseC_MucC	PF04246.12	gi|345006954|ref|YP_004809806.1|	-	0.099	12.6	0.1	0.11	12.4	0.1	1.0	1	0	0	1	1	1	0	Positive	regulator	of	sigma(E),	RseC/MucC
Gly-zipper_Omp	PF13488.6	gi|345006954|ref|YP_004809806.1|	-	0.11	12.6	8.6	0.15	12.1	8.6	1.2	1	0	0	1	1	1	0	Glycine	zipper
DUF441	PF04284.13	gi|345006954|ref|YP_004809806.1|	-	0.41	10.6	6.9	1.1	9.2	6.9	1.6	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF441)
Syndecan	PF01034.20	gi|345006954|ref|YP_004809806.1|	-	1.3	9.0	4.6	4.5	7.3	0.3	2.1	2	0	0	2	2	2	0	Syndecan	domain
FHIPEP	PF00771.20	gi|345006954|ref|YP_004809806.1|	-	2	6.7	6.2	2.3	6.6	6.2	1.0	1	0	0	1	1	1	0	FHIPEP	family
Romo1	PF10247.9	gi|345006954|ref|YP_004809806.1|	-	5.6	7.4	9.7	4.3	7.8	1.8	2.1	1	1	1	2	2	2	0	Reactive	mitochondrial	oxygen	species	modulator	1
ABC_tran	PF00005.27	gi|345006956|ref|YP_004809808.1|	-	1.2e-27	97.1	0.0	1.7e-27	96.6	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|345006956|ref|YP_004809808.1|	-	4.6e-15	56.2	0.6	7.3e-11	42.4	0.0	2.2	1	1	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_23	PF13476.6	gi|345006956|ref|YP_004809808.1|	-	0.00077	20.0	0.0	0.0012	19.4	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
AAA_15	PF13175.6	gi|345006956|ref|YP_004809808.1|	-	0.00084	19.2	0.0	1.4	8.6	0.0	2.1	1	1	0	2	2	2	2	AAA	ATPase	domain
AAA_29	PF13555.6	gi|345006956|ref|YP_004809808.1|	-	0.0012	18.6	0.2	0.0022	17.7	0.2	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
Mg_chelatase	PF01078.21	gi|345006956|ref|YP_004809808.1|	-	0.026	13.9	0.0	0.04	13.3	0.0	1.5	1	0	0	1	1	1	0	Magnesium	chelatase,	subunit	ChlI
AAA_30	PF13604.6	gi|345006956|ref|YP_004809808.1|	-	0.028	14.1	0.0	0.056	13.2	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
AAA_22	PF13401.6	gi|345006956|ref|YP_004809808.1|	-	0.035	14.4	0.0	0.4	11.0	0.0	2.1	2	0	0	2	2	2	0	AAA	domain
AAA_13	PF13166.6	gi|345006956|ref|YP_004809808.1|	-	0.043	12.5	0.3	2.4	6.7	0.0	2.1	2	0	0	2	2	2	0	AAA	domain
AAA_27	PF13514.6	gi|345006956|ref|YP_004809808.1|	-	0.13	11.9	0.0	0.23	11.1	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
AAA_16	PF13191.6	gi|345006956|ref|YP_004809808.1|	-	0.13	12.6	0.1	0.29	11.5	0.1	1.6	1	1	0	1	1	1	0	AAA	ATPase	domain
HTH_3	PF01381.22	gi|345006958|ref|YP_004809810.1|	-	2.3e-16	59.6	0.0	2.6e-16	59.4	0.0	1.1	1	0	0	1	1	1	1	Helix-turn-helix
HTH_31	PF13560.6	gi|345006958|ref|YP_004809810.1|	-	4.5e-10	39.7	0.0	5.1e-10	39.5	0.0	1.0	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_19	PF12844.7	gi|345006958|ref|YP_004809810.1|	-	2.1e-08	34.1	0.0	2.1e-08	34.0	0.0	1.1	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_26	PF13443.6	gi|345006958|ref|YP_004809810.1|	-	4.2e-07	30.3	0.0	4.7e-07	30.1	0.0	1.1	1	0	0	1	1	1	1	Cro/C1-type	HTH	DNA-binding	domain
HTH_24	PF13412.6	gi|345006958|ref|YP_004809810.1|	-	0.00015	21.3	0.0	0.00023	20.7	0.0	1.2	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_11	PF08279.12	gi|345006958|ref|YP_004809810.1|	-	0.00021	21.2	0.1	0.0037	17.2	0.1	2.0	2	0	0	2	2	2	1	HTH	domain
Sigma70_r4	PF04545.16	gi|345006958|ref|YP_004809810.1|	-	0.00024	20.5	0.0	0.0005	19.5	0.1	1.5	2	0	0	2	2	2	1	Sigma-70,	region	4
HTH_25	PF13413.6	gi|345006958|ref|YP_004809810.1|	-	0.0003	20.6	0.1	0.00037	20.3	0.1	1.2	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_Crp_2	PF13545.6	gi|345006958|ref|YP_004809810.1|	-	0.00086	19.2	0.0	0.0016	18.4	0.1	1.5	2	0	0	2	2	2	1	Crp-like	helix-turn-helix	domain
MarR_2	PF12802.7	gi|345006958|ref|YP_004809810.1|	-	0.0043	16.9	0.0	0.0069	16.3	0.0	1.3	1	0	0	1	1	1	1	MarR	family
YdaS_antitoxin	PF15943.5	gi|345006958|ref|YP_004809810.1|	-	0.011	15.5	0.0	0.016	15.1	0.0	1.4	1	1	0	1	1	1	0	Putative	antitoxin	of	bacterial	toxin-antitoxin	system,	YdaS/YdaT
HTH_23	PF13384.6	gi|345006958|ref|YP_004809810.1|	-	0.015	15.1	0.0	0.028	14.2	0.0	1.4	2	0	0	2	2	2	0	Homeodomain-like	domain
HTH_37	PF13744.6	gi|345006958|ref|YP_004809810.1|	-	0.023	14.6	0.0	0.024	14.6	0.0	1.2	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_AsnC-type	PF13404.6	gi|345006958|ref|YP_004809810.1|	-	0.029	14.2	0.1	0.049	13.5	0.1	1.3	1	0	0	1	1	1	0	AsnC-type	helix-turn-helix	domain
Crp	PF00325.20	gi|345006958|ref|YP_004809810.1|	-	0.034	13.8	0.0	0.067	12.9	0.0	1.5	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	crp	family
GntR	PF00392.21	gi|345006958|ref|YP_004809810.1|	-	0.053	13.2	0.0	0.073	12.7	0.0	1.4	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	gntR	family
CENP-B_N	PF04218.13	gi|345006958|ref|YP_004809810.1|	-	0.065	12.9	0.1	0.1	12.2	0.1	1.4	1	0	0	1	1	1	0	CENP-B	N-terminal	DNA-binding	domain
DUF1323	PF07037.11	gi|345006958|ref|YP_004809810.1|	-	0.077	13.4	0.0	0.1	13.0	0.0	1.2	1	0	0	1	1	1	0	Putative	transcription	regulator	(DUF1323)
MarR	PF01047.22	gi|345006958|ref|YP_004809810.1|	-	0.092	12.7	0.0	0.23	11.4	0.0	1.6	2	0	0	2	2	2	0	MarR	family
HTH_28	PF13518.6	gi|345006958|ref|YP_004809810.1|	-	0.11	12.7	0.1	0.16	12.1	0.1	1.3	1	0	0	1	1	1	0	Helix-turn-helix	domain
MerR	PF00376.23	gi|345006958|ref|YP_004809810.1|	-	0.16	11.7	0.0	0.26	11.1	0.0	1.3	1	0	0	1	1	1	0	MerR	family	regulatory	protein
SdpI	PF13630.6	gi|345006959|ref|YP_004809811.1|	-	0.0025	17.9	0.1	0.0025	17.9	0.1	2.3	2	0	0	2	2	2	1	SdpI/YhfL	protein	family
DUF2178	PF09946.9	gi|345006959|ref|YP_004809811.1|	-	0.0037	17.4	1.2	0.0054	16.9	1.2	1.2	1	0	0	1	1	1	1	Predicted	membrane	protein	(DUF2178)
DUF3464	PF11947.8	gi|345006959|ref|YP_004809811.1|	-	0.17	11.7	2.9	0.3	10.8	2.9	1.4	1	0	0	1	1	1	0	Photosynthesis	affected	mutant	68
DUF2583	PF10762.9	gi|345006959|ref|YP_004809811.1|	-	1	9.8	4.6	0.78	10.2	0.7	2.2	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2583)
DUF443	PF04276.12	gi|345006960|ref|YP_004809812.1|	-	0.055	13.3	0.7	0.061	13.1	0.7	1.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF443)
Phage_holin_3_6	PF07332.11	gi|345006960|ref|YP_004809812.1|	-	1.5	8.9	8.6	1.9	8.6	8.6	1.1	1	0	0	1	1	1	0	Putative	Actinobacterial	Holin-X,	holin	superfamily	III
Phage_integrase	PF00589.22	gi|345006961|ref|YP_004809813.1|	-	5.3e-12	45.9	0.1	1.7e-11	44.2	0.1	1.8	1	1	0	1	1	1	1	Phage	integrase	family
Phage_int_SAM_1	PF02899.17	gi|345006961|ref|YP_004809813.1|	-	9.2e-07	29.1	0.1	4.2e-06	27.0	0.1	2.0	2	0	0	2	2	2	1	Phage	integrase,	N-terminal	SAM-like	domain
Phage_int_SAM_4	PF13495.6	gi|345006961|ref|YP_004809813.1|	-	1.5e-05	25.4	0.0	3.7e-05	24.1	0.0	1.6	1	0	0	1	1	1	1	Phage	integrase,	N-terminal	SAM-like	domain
Phage_int_SAM_5	PF13102.6	gi|345006961|ref|YP_004809813.1|	-	0.0034	17.7	0.0	0.016	15.5	0.0	2.0	2	0	0	2	2	2	1	Phage	integrase	SAM-like	domain
Sigma_1s	PF02454.16	gi|345006961|ref|YP_004809813.1|	-	0.051	13.6	0.1	0.13	12.3	0.1	1.7	1	0	0	1	1	1	0	Sigma	1s	protein
N6_Mtase	PF02384.16	gi|345006962|ref|YP_004809814.1|	-	3.5e-11	42.9	0.0	6.8e-11	42.0	0.0	1.3	1	0	0	1	1	1	1	N-6	DNA	Methylase
TaqI_C	PF12950.7	gi|345006962|ref|YP_004809814.1|	-	2.4e-07	30.9	0.0	4.1e-07	30.1	0.0	1.3	1	0	0	1	1	1	1	TaqI-like	C-terminal	specificity	domain
Eco57I	PF07669.11	gi|345006962|ref|YP_004809814.1|	-	1.7e-06	28.5	0.0	7e-06	26.5	0.0	1.9	2	0	0	2	2	2	1	Eco57I	restriction-modification	methylase
MTS	PF05175.14	gi|345006962|ref|YP_004809814.1|	-	0.0033	17.0	0.0	0.0067	16.0	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	small	domain
Methyltransf_25	PF13649.6	gi|345006962|ref|YP_004809814.1|	-	0.0051	17.5	0.0	0.61	10.8	0.0	3.3	3	0	0	3	3	3	1	Methyltransferase	domain
Methyltransf_31	PF13847.6	gi|345006962|ref|YP_004809814.1|	-	0.034	14.0	0.0	0.072	12.9	0.0	1.6	1	0	0	1	1	1	0	Methyltransferase	domain
UvrD-helicase	PF00580.21	gi|345006963|ref|YP_004809815.1|	-	2.5e-56	191.5	0.0	2.3e-27	96.3	0.0	2.4	2	0	0	2	2	2	2	UvrD/REP	helicase	N-terminal	domain
AAA_19	PF13245.6	gi|345006963|ref|YP_004809815.1|	-	5.5e-31	107.9	0.0	1.3e-30	106.7	0.0	1.7	1	0	0	1	1	1	1	AAA	domain
UvrD_C	PF13361.6	gi|345006963|ref|YP_004809815.1|	-	3.3e-29	102.4	0.0	2e-13	50.5	0.0	2.2	2	0	0	2	2	2	2	UvrD-like	helicase	C-terminal	domain
PDDEXK_1	PF12705.7	gi|345006963|ref|YP_004809815.1|	-	1.6e-22	80.7	1.3	4e-22	79.4	1.3	1.7	1	0	0	1	1	1	1	PD-(D/E)XK	nuclease	superfamily
UvrD_C_2	PF13538.6	gi|345006963|ref|YP_004809815.1|	-	9.7e-08	31.7	0.5	0.0026	17.6	0.0	2.9	3	0	0	3	3	3	2	UvrD-like	helicase	C-terminal	domain
AAA_30	PF13604.6	gi|345006963|ref|YP_004809815.1|	-	7.8e-07	29.0	0.0	8.1e-05	22.4	0.0	2.4	2	0	0	2	2	2	1	AAA	domain
AAA_11	PF13086.6	gi|345006963|ref|YP_004809815.1|	-	0.039	13.7	0.0	0.071	12.9	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
Gelsolin	PF00626.22	gi|345006963|ref|YP_004809815.1|	-	0.043	13.7	0.0	0.11	12.5	0.0	1.6	1	0	0	1	1	1	0	Gelsolin	repeat
DDE_Tnp_IS240	PF13610.6	gi|345006964|ref|YP_004809816.1|	-	1.5e-09	38.2	0.0	2.1e-09	37.7	0.0	1.2	1	0	0	1	1	1	1	DDE	domain
DUF3883	PF13020.6	gi|345006965|ref|YP_004809817.1|	-	1.4e-06	28.2	0.0	8.6e-06	25.7	0.0	2.0	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF3883)
Ribosomal_L21e	PF01157.18	gi|345006966|ref|YP_004809818.1|	-	0.013	15.3	0.0	0.016	15.1	0.0	1.2	1	0	0	1	1	1	0	Ribosomal	protein	L21e
DUF4596	PF15363.6	gi|345006966|ref|YP_004809818.1|	-	0.09	13.0	0.0	0.28	11.4	0.1	1.8	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4596)
DUF87	PF01935.17	gi|345006967|ref|YP_004809819.1|	-	8.1e-34	117.7	0.0	1.2e-33	117.1	0.0	1.3	1	0	0	1	1	1	1	Helicase	HerA,	central	domain
DUF853	PF05872.12	gi|345006967|ref|YP_004809819.1|	-	4.3e-06	25.6	0.0	1.3e-05	24.0	0.0	1.6	2	0	0	2	2	2	1	Bacterial	protein	of	unknown	function	(DUF853)
TrwB_AAD_bind	PF10412.9	gi|345006967|ref|YP_004809819.1|	-	0.011	14.7	0.0	0.092	11.6	0.0	2.0	2	0	0	2	2	2	0	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
HAS-barrel	PF09378.10	gi|345006967|ref|YP_004809819.1|	-	0.055	13.6	0.0	0.11	12.6	0.0	1.5	1	0	0	1	1	1	0	HAS	barrel	domain
AAA_10	PF12846.7	gi|345006967|ref|YP_004809819.1|	-	0.078	11.9	0.0	0.17	10.7	0.0	1.5	2	0	0	2	2	2	0	AAA-like	domain
ResIII	PF04851.15	gi|345006967|ref|YP_004809819.1|	-	0.12	12.3	0.0	0.25	11.3	0.0	1.4	1	0	0	1	1	1	0	Type	III	restriction	enzyme,	res	subunit
NurA	PF09376.10	gi|345006969|ref|YP_004809821.1|	-	3.8e-15	56.2	0.0	4.9e-15	55.9	0.0	1.1	1	0	0	1	1	1	1	NurA	domain
Polysacc_deac_1	PF01522.21	gi|345006969|ref|YP_004809821.1|	-	0.028	14.3	0.0	1.6	8.6	0.0	2.5	2	0	0	2	2	2	0	Polysaccharide	deacetylase
AAA_15	PF13175.6	gi|345006970|ref|YP_004809822.1|	-	8.3e-14	52.1	15.4	5.3e-12	46.1	1.1	3.7	1	1	1	2	2	2	1	AAA	ATPase	domain
SMC_N	PF02463.19	gi|345006970|ref|YP_004809822.1|	-	5.9e-12	45.5	0.0	5.9e-12	45.5	0.0	2.7	2	1	0	3	3	2	1	RecF/RecN/SMC	N	terminal	domain
AAA_23	PF13476.6	gi|345006970|ref|YP_004809822.1|	-	6e-11	43.2	101.4	0.001	19.6	56.2	7.3	1	1	1	3	3	1	1	AAA	domain
AAA_13	PF13166.6	gi|345006970|ref|YP_004809822.1|	-	2.5e-08	33.1	72.5	0.02	13.6	0.1	6.0	3	2	3	6	6	6	4	AAA	domain
BLOC1_2	PF10046.9	gi|345006970|ref|YP_004809822.1|	-	9.8e-06	25.8	63.8	0.0047	17.2	2.4	9.1	3	2	3	8	8	8	4	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
AAA_21	PF13304.6	gi|345006970|ref|YP_004809822.1|	-	3.3e-05	23.9	26.9	0.00041	20.3	0.3	4.0	1	1	1	3	3	2	1	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SbcCD_C	PF13558.6	gi|345006970|ref|YP_004809822.1|	-	6.9e-05	23.0	0.0	0.00021	21.5	0.0	1.8	1	0	0	1	1	1	1	Putative	exonuclease	SbcCD,	C	subunit
Spc7	PF08317.11	gi|345006970|ref|YP_004809822.1|	-	0.0001	21.3	104.8	0.0072	15.2	13.5	6.6	2	2	5	7	7	7	5	Spc7	kinetochore	protein
AAA_29	PF13555.6	gi|345006970|ref|YP_004809822.1|	-	0.00012	21.8	0.0	0.00021	20.9	0.0	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
PspA_IM30	PF04012.12	gi|345006970|ref|YP_004809822.1|	-	0.00018	21.1	13.3	0.00018	21.1	13.3	5.5	2	2	3	5	5	3	1	PspA/IM30	family
GAS	PF13851.6	gi|345006970|ref|YP_004809822.1|	-	0.00019	20.9	86.0	0.00088	18.7	16.9	7.3	2	2	4	7	7	7	4	Growth-arrest	specific	micro-tubule	binding
DUF5082	PF16888.5	gi|345006970|ref|YP_004809822.1|	-	0.00021	21.6	3.8	0.00021	21.6	3.8	9.8	3	2	5	9	9	7	2	Domain	of	unknown	function	(DUF5082)
NPV_P10	PF05531.12	gi|345006970|ref|YP_004809822.1|	-	0.0013	19.1	24.9	0.22	12.0	0.8	7.7	4	2	4	8	8	8	1	Nucleopolyhedrovirus	P10	protein
Rad50_zn_hook	PF04423.14	gi|345006970|ref|YP_004809822.1|	-	0.0021	17.9	0.2	0.0021	17.9	0.2	6.7	6	1	1	7	7	5	1	Rad50	zinc	hook	motif
DUF4407	PF14362.6	gi|345006970|ref|YP_004809822.1|	-	0.0032	16.9	76.1	0.19	11.0	12.4	4.8	2	2	2	4	4	4	3	Domain	of	unknown	function	(DUF4407)
Dor1	PF04124.12	gi|345006970|ref|YP_004809822.1|	-	0.0053	15.5	3.7	0.0053	15.5	3.7	4.5	2	2	2	5	5	5	1	Dor1-like	family
FliJ	PF02050.16	gi|345006970|ref|YP_004809822.1|	-	0.0054	16.9	61.2	0.055	13.7	3.0	6.6	2	2	2	5	5	5	2	Flagellar	FliJ	protein
ABC_tran	PF00005.27	gi|345006970|ref|YP_004809822.1|	-	0.012	16.1	19.6	0.017	15.7	0.1	5.4	2	1	0	2	2	1	0	ABC	transporter
DUF3584	PF12128.8	gi|345006970|ref|YP_004809822.1|	-	0.046	11.3	97.3	0.17	9.4	33.4	4.1	3	1	1	4	4	4	0	Protein	of	unknown	function	(DUF3584)
T3SSipB	PF16535.5	gi|345006970|ref|YP_004809822.1|	-	0.1	13.1	50.0	0.22	12.0	2.1	6.4	2	2	2	4	4	4	0	Type	III	cell	invasion	protein	SipB
Fib_alpha	PF08702.10	gi|345006970|ref|YP_004809822.1|	-	0.12	12.5	41.6	1.1	9.4	0.5	6.8	4	1	2	6	6	6	0	Fibrinogen	alpha/beta	chain	family
Occludin_ELL	PF07303.13	gi|345006970|ref|YP_004809822.1|	-	0.18	12.5	41.6	0.22	12.3	0.9	7.2	3	2	5	8	8	8	0	Occludin	homology	domain
MukB	PF04310.12	gi|345006970|ref|YP_004809822.1|	-	0.5	10.1	0.0	0.5	10.1	0.0	3.0	3	1	0	4	4	4	0	MukB	N-terminal
PLAC9	PF15205.6	gi|345006970|ref|YP_004809822.1|	-	0.73	10.3	0.0	0.73	10.3	0.0	5.0	5	2	1	6	6	3	0	Placenta-specific	protein	9
DUF4988	PF16378.5	gi|345006970|ref|YP_004809822.1|	-	0.93	9.1	15.8	1.8	8.2	0.1	5.2	4	1	1	5	5	5	0	Domain	of	unknown	function
DUF812	PF05667.11	gi|345006970|ref|YP_004809822.1|	-	1.5	7.6	90.6	0.27	10.1	15.2	4.6	1	1	2	4	4	4	0	Protein	of	unknown	function	(DUF812)
MAD	PF05557.13	gi|345006970|ref|YP_004809822.1|	-	2.1	6.6	94.1	0.18	10.1	18.4	4.1	2	2	2	4	4	4	0	Mitotic	checkpoint	protein
DUF4201	PF13870.6	gi|345006970|ref|YP_004809822.1|	-	3.3	7.4	69.7	0.36	10.5	6.1	6.8	2	2	4	6	6	6	0	Domain	of	unknown	function	(DUF4201)
Fez1	PF06818.15	gi|345006970|ref|YP_004809822.1|	-	5.1	7.5	94.5	0.68	10.4	23.9	5.2	1	1	3	4	4	4	0	Fez1
FlaC_arch	PF05377.11	gi|345006970|ref|YP_004809822.1|	-	6.4	7.2	71.4	0.35	11.3	5.0	12.0	6	5	4	11	11	10	0	Flagella	accessory	protein	C	(FlaC)
TMF_TATA_bd	PF12325.8	gi|345006970|ref|YP_004809822.1|	-	9.6	6.5	112.1	0.57	10.4	1.2	8.5	2	2	4	8	8	6	0	TATA	element	modulatory	factor	1	TATA	binding
Metallophos	PF00149.28	gi|345006971|ref|YP_004809823.1|	-	3.3e-12	47.3	0.0	5.7e-12	46.6	0.0	1.4	1	0	0	1	1	1	1	Calcineurin-like	phosphoesterase
Metallophos_2	PF12850.7	gi|345006971|ref|YP_004809823.1|	-	3e-09	37.3	0.0	2.6e-07	31.0	0.0	2.4	1	1	0	1	1	1	1	Calcineurin-like	phosphoesterase	superfamily	domain
DEAD	PF00270.29	gi|345006972|ref|YP_004809824.1|	-	1.1e-29	103.4	0.0	2.2e-29	102.4	0.0	1.5	1	0	0	1	1	1	1	DEAD/DEAH	box	helicase
Helicase_C	PF00271.31	gi|345006972|ref|YP_004809824.1|	-	2.2e-12	47.3	0.0	9.7e-12	45.2	0.0	2.1	2	0	0	2	2	2	1	Helicase	conserved	C-terminal	domain
DUF2791	PF10923.8	gi|345006973|ref|YP_004809825.1|	-	1.1e-159	531.7	0.1	1.3e-159	531.5	0.1	1.0	1	0	0	1	1	1	1	P-loop	Domain	of	unknown	function	(DUF2791)
AAA_16	PF13191.6	gi|345006973|ref|YP_004809825.1|	-	8e-08	32.8	1.2	2e-07	31.6	1.2	1.8	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_22	PF13401.6	gi|345006973|ref|YP_004809825.1|	-	3.5e-06	27.3	0.0	0.013	15.7	0.0	2.6	1	1	0	1	1	1	1	AAA	domain
Sigma54_activ_2	PF14532.6	gi|345006973|ref|YP_004809825.1|	-	0.047	13.8	0.0	0.1	12.7	0.0	1.6	1	0	0	1	1	1	0	Sigma-54	interaction	domain
TerB_N	PF13208.6	gi|345006974|ref|YP_004809826.1|	-	1.5e-62	211.0	0.0	5.1e-62	209.3	0.0	1.9	2	0	0	2	2	2	1	TerB	N-terminal	domain
TerB_C	PF15615.6	gi|345006974|ref|YP_004809826.1|	-	3.5e-40	137.8	9.4	3.5e-40	137.8	9.4	2.6	2	0	0	2	2	2	1	TerB-C	domain
TM2	PF05154.16	gi|345006974|ref|YP_004809826.1|	-	3.4e-16	59.3	7.7	5.2e-16	58.7	7.7	1.3	1	0	0	1	1	1	1	TM2	domain
TerB	PF05099.13	gi|345006974|ref|YP_004809826.1|	-	0.00023	21.1	0.1	0.00078	19.4	0.1	1.9	1	0	0	1	1	1	1	Tellurite	resistance	protein	TerB
CENP-I	PF07778.11	gi|345006974|ref|YP_004809826.1|	-	0.13	10.9	0.6	0.2	10.3	0.6	1.2	1	0	0	1	1	1	0	Mis6
NucS	PF01939.16	gi|345006976|ref|YP_004809828.1|	-	1.7e-05	24.3	0.0	2.9e-05	23.5	0.0	1.3	1	0	0	1	1	1	1	Endonuclease	NucS
MmcB-like	PF06319.12	gi|345006976|ref|YP_004809828.1|	-	0.031	14.0	0.0	0.051	13.3	0.0	1.3	1	0	0	1	1	1	0	DNA	repair	protein	MmcB-like
IF2_N	PF04760.15	gi|345006976|ref|YP_004809828.1|	-	0.032	14.0	0.0	0.94	9.4	0.0	2.5	2	0	0	2	2	2	0	Translation	initiation	factor	IF-2,	N-terminal	region
TrmB	PF01978.19	gi|345006978|ref|YP_004809830.1|	-	0.0008	19.2	0.0	0.0011	18.9	0.0	1.2	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
MarR_2	PF12802.7	gi|345006978|ref|YP_004809830.1|	-	0.0027	17.5	0.0	0.0047	16.8	0.0	1.3	1	0	0	1	1	1	1	MarR	family
HTH_Crp_2	PF13545.6	gi|345006978|ref|YP_004809830.1|	-	0.017	15.1	0.0	0.021	14.8	0.0	1.4	1	0	0	1	1	1	0	Crp-like	helix-turn-helix	domain
MarR	PF01047.22	gi|345006978|ref|YP_004809830.1|	-	0.021	14.8	0.0	0.033	14.1	0.0	1.4	1	0	0	1	1	1	0	MarR	family
HTH_11	PF08279.12	gi|345006978|ref|YP_004809830.1|	-	0.077	13.0	0.0	0.13	12.3	0.0	1.4	1	0	0	1	1	1	0	HTH	domain
HTH_3	PF01381.22	gi|345006978|ref|YP_004809830.1|	-	0.14	12.2	0.0	0.37	10.9	0.0	1.7	1	0	0	1	1	1	0	Helix-turn-helix
HTH_45	PF14947.6	gi|345006978|ref|YP_004809830.1|	-	0.19	11.7	0.0	0.27	11.3	0.0	1.2	1	0	0	1	1	1	0	Winged	helix-turn-helix
Voltage_CLC	PF00654.20	gi|345006980|ref|YP_004809832.1|	-	0.00019	20.8	5.1	0.00022	20.6	5.1	1.1	1	0	0	1	1	1	1	Voltage	gated	chloride	channel
DUF3958	PF13125.6	gi|345006980|ref|YP_004809832.1|	-	0.26	11.5	0.1	0.43	10.8	0.1	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3958)
3HCDH_RFF	PF18321.1	gi|345006981|ref|YP_004809833.1|	-	0.13	12.7	0.0	0.2	12.1	0.0	1.2	1	0	0	1	1	1	0	3-hydroxybutyryl-CoA	dehydrogenase	reduced	Rossmann-fold	domain
Rep_fac_C	PF08542.11	gi|345006982|ref|YP_004809834.1|	-	0.047	14.1	0.0	0.15	12.5	0.0	1.8	2	0	0	2	2	2	0	Replication	factor	C	C-terminal	domain
GHL6	PF14871.6	gi|345006982|ref|YP_004809834.1|	-	0.11	12.7	0.0	0.19	11.9	0.0	1.3	1	0	0	1	1	1	0	Hypothetical	glycosyl	hydrolase	6
Prok-RING_4	PF14447.6	gi|345006983|ref|YP_004809835.1|	-	0.00058	19.7	0.8	0.022	14.6	0.1	2.1	2	0	0	2	2	2	1	Prokaryotic	RING	finger	family	4
FANCL_C	PF11793.8	gi|345006983|ref|YP_004809835.1|	-	0.002	18.3	0.6	0.1	12.8	0.1	2.1	2	0	0	2	2	2	1	FANCL	C-terminal	domain
zf-C3HC4_3	PF13920.6	gi|345006983|ref|YP_004809835.1|	-	0.011	15.6	0.8	0.66	9.9	0.1	2.1	2	0	0	2	2	2	0	Zinc	finger,	C3HC4	type	(RING	finger)
zf-Sec23_Sec24	PF04810.15	gi|345006983|ref|YP_004809835.1|	-	0.011	15.8	0.5	1.2	9.2	0.1	2.1	2	0	0	2	2	2	0	Sec23/Sec24	zinc	finger
DZR	PF12773.7	gi|345006983|ref|YP_004809835.1|	-	0.014	15.4	0.2	0.019	14.9	0.2	1.3	1	1	0	1	1	1	0	Double	zinc	ribbon
CC	PF04942.14	gi|345006983|ref|YP_004809835.1|	-	0.02	15.1	0.9	5.8	7.2	0.0	2.4	3	0	0	3	3	3	0	CC	domain
UPF0547	PF10571.9	gi|345006983|ref|YP_004809835.1|	-	0.021	14.9	3.9	1.6	8.9	0.1	2.1	2	0	0	2	2	2	0	Uncharacterised	protein	family	UPF0547
Lar_restr_allev	PF14354.6	gi|345006983|ref|YP_004809835.1|	-	0.034	14.5	0.5	0.042	14.2	0.5	1.2	1	0	0	1	1	1	0	Restriction	alleviation	protein	Lar
zf-piccolo	PF05715.13	gi|345006983|ref|YP_004809835.1|	-	0.063	13.4	1.3	0.2	11.9	1.3	1.7	1	1	0	1	1	1	0	Piccolo	Zn-finger
Elf1	PF05129.13	gi|345006983|ref|YP_004809835.1|	-	0.075	13.1	0.1	0.083	12.9	0.1	1.1	1	0	0	1	1	1	0	Transcription	elongation	factor	Elf1	like
zf-H2C2_2	PF13465.6	gi|345006983|ref|YP_004809835.1|	-	0.088	13.3	1.4	3.3	8.3	0.1	2.1	2	0	0	2	2	2	0	Zinc-finger	double	domain
zf-Di19	PF05605.12	gi|345006983|ref|YP_004809835.1|	-	0.1	12.9	2.6	0.21	11.9	2.6	1.5	1	1	0	1	1	1	0	Drought	induced	19	protein	(Di19),	zinc-binding
zf-TFIIB	PF13453.6	gi|345006983|ref|YP_004809835.1|	-	0.14	11.5	2.6	0.52	9.7	2.5	1.8	1	1	1	2	2	2	0	Transcription	factor	zinc-finger
zf-LITAF-like	PF10601.9	gi|345006983|ref|YP_004809835.1|	-	0.24	11.7	4.7	0.94	9.8	0.7	2.1	1	1	1	2	2	2	0	LITAF-like	zinc	ribbon	domain
zf-ribbon_3	PF13248.6	gi|345006984|ref|YP_004809836.1|	-	5e-07	28.9	2.5	8.5e-07	28.2	2.5	1.3	1	0	0	1	1	1	1	zinc-ribbon	domain
zinc_ribbon_2	PF13240.6	gi|345006984|ref|YP_004809836.1|	-	3.8e-06	26.4	2.0	5.7e-06	25.9	2.0	1.2	1	0	0	1	1	1	1	zinc-ribbon	domain
DZR	PF12773.7	gi|345006984|ref|YP_004809836.1|	-	3.6e-05	23.7	2.4	4.9e-05	23.3	2.4	1.2	1	0	0	1	1	1	1	Double	zinc	ribbon
RNA_POL_M_15KD	PF02150.16	gi|345006984|ref|YP_004809836.1|	-	7.5e-05	22.5	3.2	0.00011	22.0	0.3	2.0	1	1	0	2	2	2	1	RNA	polymerases	M/15	Kd	subunit
zinc_ribbon_15	PF17032.5	gi|345006984|ref|YP_004809836.1|	-	0.00045	20.9	1.3	0.0005	20.8	1.3	1.1	1	0	0	1	1	1	1	zinc-ribbon	family
HypA	PF01155.19	gi|345006984|ref|YP_004809836.1|	-	0.00062	19.8	1.5	0.00062	19.8	1.5	1.1	1	0	0	1	1	1	1	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
Zn-ribbon_8	PF09723.10	gi|345006984|ref|YP_004809836.1|	-	0.001	19.1	5.3	0.0025	17.9	5.3	1.6	1	1	0	1	1	1	1	Zinc	ribbon	domain
DUF1272	PF06906.11	gi|345006984|ref|YP_004809836.1|	-	0.0021	18.1	1.0	0.0026	17.8	1.0	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1272)
zf-C3HC4_3	PF13920.6	gi|345006984|ref|YP_004809836.1|	-	0.015	15.2	1.2	0.037	13.9	1.2	1.7	1	1	0	1	1	1	0	Zinc	finger,	C3HC4	type	(RING	finger)
Zn_Tnp_IS1595	PF12760.7	gi|345006984|ref|YP_004809836.1|	-	0.017	15.1	1.2	3.7	7.6	0.0	2.2	2	0	0	2	2	2	0	Transposase	zinc-ribbon	domain
zf-IS66	PF13005.7	gi|345006984|ref|YP_004809836.1|	-	0.019	15.3	1.8	1.9	9.0	0.1	2.3	2	0	0	2	2	2	0	zinc-finger	binding	domain	of	transposase	IS66
zinc-ribbon_6	PF10005.9	gi|345006984|ref|YP_004809836.1|	-	0.037	14.7	0.3	0.047	14.4	0.3	1.2	1	0	0	1	1	1	0	zinc-ribbon	domain
zinc_ribbon_4	PF13717.6	gi|345006984|ref|YP_004809836.1|	-	0.066	13.1	1.9	6.9	6.7	0.1	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
TF_Zn_Ribbon	PF08271.12	gi|345006984|ref|YP_004809836.1|	-	0.081	12.4	3.5	0.15	11.6	3.5	1.5	1	0	0	1	1	1	0	TFIIB	zinc-binding
zf-C4_Topoisom	PF01396.19	gi|345006984|ref|YP_004809836.1|	-	0.083	12.7	1.5	0.49	10.2	0.0	2.3	2	1	1	3	3	3	0	Topoisomerase	DNA	binding	C4	zinc	finger
CpXC	PF14353.6	gi|345006984|ref|YP_004809836.1|	-	0.086	12.9	1.9	0.74	9.9	0.1	2.0	1	1	1	2	2	2	0	CpXC	protein
C1_2	PF03107.16	gi|345006984|ref|YP_004809836.1|	-	0.11	12.9	1.7	0.95	9.8	1.4	2.1	1	1	0	1	1	1	0	C1	domain
Ogr_Delta	PF04606.12	gi|345006984|ref|YP_004809836.1|	-	0.11	12.5	3.3	0.67	10.0	0.3	2.1	2	0	0	2	2	2	0	Ogr/Delta-like	zinc	finger
zf-Mss51	PF13824.6	gi|345006984|ref|YP_004809836.1|	-	0.12	12.5	3.6	0.54	10.4	0.1	2.1	1	1	1	2	2	2	0	Zinc-finger	of	mitochondrial	splicing	suppressor	51
DUF2688	PF10892.8	gi|345006984|ref|YP_004809836.1|	-	0.15	11.5	4.2	0.58	9.7	4.2	1.9	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF2688)
Rubredoxin_2	PF18073.1	gi|345006984|ref|YP_004809836.1|	-	0.17	11.7	4.6	1.9	8.3	0.4	2.2	2	0	0	2	2	2	0	Rubredoxin	metal	binding	domain
OrfB_Zn_ribbon	PF07282.11	gi|345006984|ref|YP_004809836.1|	-	0.28	11.1	4.8	0.83	9.6	0.6	2.0	1	1	1	2	2	2	0	Putative	transposase	DNA-binding	domain
zinc_ribbon_9	PF14369.6	gi|345006984|ref|YP_004809836.1|	-	0.32	11.3	4.9	0.72	10.2	4.9	1.6	1	1	0	1	1	1	0	zinc-ribbon
Mu-like_Com	PF10122.9	gi|345006984|ref|YP_004809836.1|	-	0.35	10.3	4.2	0.72	9.4	0.2	2.1	1	1	1	2	2	2	0	Mu-like	prophage	protein	Com
zf_UBZ	PF18439.1	gi|345006984|ref|YP_004809836.1|	-	0.36	10.5	5.5	0.58	9.8	0.2	2.4	2	1	1	3	3	3	0	Ubiquitin-Binding	Zinc	Finger
PadR	PF03551.14	gi|345006986|ref|YP_004809838.1|	-	9.2e-16	57.6	0.8	1.2e-15	57.2	0.8	1.2	1	0	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
DUF1495	PF07381.11	gi|345006986|ref|YP_004809838.1|	-	0.006	16.4	0.0	0.0098	15.7	0.0	1.3	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain	(DUF1495)
HTH_45	PF14947.6	gi|345006986|ref|YP_004809838.1|	-	0.0065	16.4	0.0	0.01	15.8	0.0	1.5	1	0	0	1	1	1	1	Winged	helix-turn-helix
HalOD1	PF18545.1	gi|345006987|ref|YP_004809839.1|	-	7.3e-24	83.8	1.2	9.5e-24	83.5	1.2	1.2	1	0	0	1	1	1	1	Halobacterial	output	domain	1
CytB6-F_Fe-S	PF08802.10	gi|345006988|ref|YP_004809840.1|	-	0.0058	16.6	0.3	0.013	15.5	0.3	1.5	1	0	0	1	1	1	1	Cytochrome	B6-F	complex	Fe-S	subunit
DDE_Tnp_1	PF01609.21	gi|345006989|ref|YP_004809841.1|	-	0.031	13.9	0.1	0.085	12.5	0.1	1.7	1	1	0	1	1	1	0	Transposase	DDE	domain
GerE	PF00196.19	gi|345006991|ref|YP_004809843.1|	-	4.5e-05	22.9	0.1	0.00012	21.5	0.0	1.7	2	0	0	2	2	2	1	Bacterial	regulatory	proteins,	luxR	family
ADP_ribosyl_GH	PF03747.14	gi|345006992|ref|YP_004809844.1|	-	2.7e-72	244.0	5.8	3.2e-72	243.7	5.8	1.1	1	0	0	1	1	1	1	ADP-ribosylglycohydrolase
Gly-zipper_YMGG	PF13441.6	gi|345006992|ref|YP_004809844.1|	-	0.51	10.1	4.6	9.5	6.1	1.3	2.5	2	0	0	2	2	2	0	YMGG-like	Gly-zipper
EFG_II	PF14492.6	gi|345006993|ref|YP_004809845.1|	-	0.053	13.6	0.1	0.28	11.3	0.1	2.1	2	0	0	2	2	2	0	Elongation	Factor	G,	domain	II
Sigma70_r4_2	PF08281.12	gi|345006994|ref|YP_004809846.1|	-	0.0044	16.7	0.1	0.0065	16.1	0.1	1.2	1	0	0	1	1	1	1	Sigma-70,	region	4
DUF134	PF02001.16	gi|345006994|ref|YP_004809846.1|	-	0.024	15.2	0.1	0.041	14.4	0.1	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	DUF134
Sigma70_ECF	PF07638.11	gi|345006994|ref|YP_004809846.1|	-	0.044	13.7	0.0	0.046	13.6	0.0	1.1	1	0	0	1	1	1	0	ECF	sigma	factor
Fe_hyd_lg_C	PF02906.14	gi|345006994|ref|YP_004809846.1|	-	0.054	13.2	0.5	4	7.0	0.1	2.0	1	1	1	2	2	2	0	Iron	only	hydrogenase	large	subunit,	C-terminal	domain
MarR_2	PF12802.7	gi|345006996|ref|YP_004809848.1|	-	8.8e-07	28.7	0.0	1.7e-06	27.8	0.0	1.5	1	1	0	1	1	1	1	MarR	family
PaaX	PF07848.12	gi|345006996|ref|YP_004809848.1|	-	0.00047	20.3	0.0	0.00079	19.6	0.0	1.3	1	0	0	1	1	1	1	PaaX-like	protein
HTH_20	PF12840.7	gi|345006996|ref|YP_004809848.1|	-	0.0035	17.4	0.0	0.0067	16.5	0.0	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_24	PF13412.6	gi|345006996|ref|YP_004809848.1|	-	0.015	14.9	0.0	0.03	13.9	0.0	1.6	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
Penicillinase_R	PF03965.16	gi|345006996|ref|YP_004809848.1|	-	0.015	15.6	0.0	0.017	15.4	0.0	1.2	1	0	0	1	1	1	0	Penicillinase	repressor
HTH_11	PF08279.12	gi|345006996|ref|YP_004809848.1|	-	0.019	14.9	0.0	0.041	13.8	0.0	1.5	1	0	0	1	1	1	0	HTH	domain
MarR	PF01047.22	gi|345006996|ref|YP_004809848.1|	-	0.022	14.7	0.0	0.047	13.6	0.0	1.5	1	0	0	1	1	1	0	MarR	family
DUF4423	PF14394.6	gi|345006996|ref|YP_004809848.1|	-	0.03	14.0	0.0	0.046	13.4	0.0	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4423)
HTH_27	PF13463.6	gi|345006996|ref|YP_004809848.1|	-	0.035	14.6	0.0	0.062	13.8	0.0	1.5	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
DUF2470	PF10615.9	gi|345006996|ref|YP_004809848.1|	-	0.049	14.3	0.0	0.11	13.1	0.0	1.6	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2470)
Snf7	PF03357.21	gi|345006996|ref|YP_004809848.1|	-	0.062	12.9	0.7	0.075	12.6	0.7	1.2	1	0	0	1	1	1	0	Snf7
HTH_5	PF01022.20	gi|345006996|ref|YP_004809848.1|	-	0.068	13.0	0.0	0.11	12.4	0.0	1.4	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
TrmB	PF01978.19	gi|345006996|ref|YP_004809848.1|	-	0.08	12.8	0.0	0.14	12.0	0.0	1.4	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
Fe_dep_repress	PF01325.19	gi|345006996|ref|YP_004809848.1|	-	0.081	13.1	0.0	0.14	12.4	0.0	1.3	1	0	0	1	1	1	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
Rrf2	PF02082.20	gi|345006996|ref|YP_004809848.1|	-	0.17	12.2	0.0	0.29	11.5	0.0	1.3	1	0	0	1	1	1	0	Transcriptional	regulator
Phage_integrase	PF00589.22	gi|345006998|ref|YP_004809850.1|	-	0.01	15.6	0.0	0.033	14.0	0.0	1.7	2	0	0	2	2	2	0	Phage	integrase	family
UPF0236	PF06782.11	gi|345006999|ref|YP_004809851.1|	-	9.7e-06	24.5	0.0	0.00026	19.8	0.0	2.1	2	0	0	2	2	2	2	Uncharacterised	protein	family	(UPF0236)
Transposase_mut	PF00872.18	gi|345006999|ref|YP_004809851.1|	-	0.00037	19.4	0.2	1	8.1	0.0	2.9	2	2	0	2	2	2	2	Transposase,	Mutator	family
PGA_cap	PF09587.10	gi|345007002|ref|YP_004809854.1|	-	2e-60	204.4	0.1	2.8e-60	204.0	0.1	1.2	1	0	0	1	1	1	1	Bacterial	capsule	synthesis	protein	PGA_cap
CarboxypepD_reg	PF13620.6	gi|345007002|ref|YP_004809854.1|	-	1.2e-06	28.7	0.8	1.2e-06	28.7	0.8	3.1	3	0	0	3	3	3	1	Carboxypeptidase	regulatory-like	domain
bMG3	PF11974.8	gi|345007002|ref|YP_004809854.1|	-	0.0067	16.4	0.3	0.03	14.3	0.1	2.2	3	0	0	3	3	3	1	Bacterial	alpha-2-macroglobulin	MG3	domain
CarbopepD_reg_2	PF13715.6	gi|345007002|ref|YP_004809854.1|	-	0.14	12.2	0.0	0.41	10.7	0.0	1.8	1	0	0	1	1	1	0	CarboxypepD_reg-like	domain
Big_6	PF17936.1	gi|345007002|ref|YP_004809854.1|	-	2.6	8.4	7.4	0.3	11.4	0.6	2.9	3	0	0	3	3	3	0	Bacterial	Ig	domain
Caps_synth_CapC	PF14102.6	gi|345007003|ref|YP_004809855.1|	-	1.9e-06	28.3	7.5	2.5e-06	27.9	7.5	1.2	1	0	0	1	1	1	1	Capsule	biosynthesis	CapC
UPF0236	PF06782.11	gi|345007004|ref|YP_004809856.1|	-	9.7e-06	24.5	0.0	0.00026	19.8	0.0	2.1	2	0	0	2	2	2	2	Uncharacterised	protein	family	(UPF0236)
Transposase_mut	PF00872.18	gi|345007004|ref|YP_004809856.1|	-	0.00037	19.4	0.2	1	8.1	0.0	2.9	2	2	0	2	2	2	2	Transposase,	Mutator	family
Phage_int_SAM_5	PF13102.6	gi|345007005|ref|YP_004809857.1|	-	0.081	13.3	0.6	23	5.4	0.1	3.0	4	0	0	4	4	4	0	Phage	integrase	SAM-like	domain
HxlR	PF01638.17	gi|345007007|ref|YP_004809859.1|	-	0.0038	17.0	0.0	0.0068	16.2	0.0	1.4	1	1	0	1	1	1	1	HxlR-like	helix-turn-helix
HTH_5	PF01022.20	gi|345007007|ref|YP_004809859.1|	-	0.0084	16.0	0.0	0.029	14.2	0.0	1.8	2	0	0	2	2	2	1	Bacterial	regulatory	protein,	arsR	family
ATPase_2	PF01637.18	gi|345007008|ref|YP_004809860.1|	-	2.2e-23	83.4	0.0	2.6e-22	79.9	0.0	2.1	1	1	0	1	1	1	1	ATPase	domain	predominantly	from	Archaea
DUF234	PF03008.14	gi|345007008|ref|YP_004809860.1|	-	3.4e-18	65.9	0.0	6.6e-18	65.0	0.0	1.4	1	0	0	1	1	1	1	Archaea	bacterial	proteins	of	unknown	function
AAA_14	PF13173.6	gi|345007008|ref|YP_004809860.1|	-	1.1e-06	28.7	0.0	2e-06	27.9	0.0	1.5	1	0	0	1	1	1	1	AAA	domain
AAA_16	PF13191.6	gi|345007008|ref|YP_004809860.1|	-	1.2e-05	25.8	0.3	0.00012	22.5	0.3	2.5	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_22	PF13401.6	gi|345007008|ref|YP_004809860.1|	-	5.4e-05	23.5	0.0	0.00012	22.3	0.0	1.5	1	0	0	1	1	1	1	AAA	domain
MarR_2	PF12802.7	gi|345007008|ref|YP_004809860.1|	-	0.0018	18.1	0.0	0.0044	16.9	0.0	1.6	1	0	0	1	1	1	1	MarR	family
HTH_24	PF13412.6	gi|345007008|ref|YP_004809860.1|	-	0.004	16.7	0.1	0.0077	15.8	0.1	1.5	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
TrmB	PF01978.19	gi|345007008|ref|YP_004809860.1|	-	0.0075	16.1	0.0	0.018	14.9	0.0	1.6	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_IclR	PF09339.10	gi|345007008|ref|YP_004809860.1|	-	0.03	14.1	0.0	0.063	13.1	0.0	1.5	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
HTH_5	PF01022.20	gi|345007008|ref|YP_004809860.1|	-	0.077	12.9	0.0	0.15	12.0	0.0	1.4	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
HTH_27	PF13463.6	gi|345007008|ref|YP_004809860.1|	-	0.29	11.6	1.1	2.1	8.9	0.1	2.4	2	0	0	2	2	2	0	Winged	helix	DNA-binding	domain
GCIP	PF13324.6	gi|345007009|ref|YP_004809861.1|	-	0.011	15.4	0.1	0.014	15.0	0.1	1.3	1	1	0	1	1	1	0	Grap2	and	cyclin-D-interacting
Fe_dep_repress	PF01325.19	gi|345007009|ref|YP_004809861.1|	-	0.096	12.9	0.0	0.16	12.2	0.0	1.3	1	0	0	1	1	1	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
DUF3826	PF12875.7	gi|345007009|ref|YP_004809861.1|	-	0.11	12.6	0.1	0.23	11.6	0.1	1.6	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF3826)
Phage_integrase	PF00589.22	gi|345007013|ref|YP_004809865.1|	-	2.6e-23	82.7	0.0	3.3e-23	82.4	0.0	1.0	1	0	0	1	1	1	1	Phage	integrase	family
DUF4696	PF15767.5	gi|345007013|ref|YP_004809865.1|	-	0.075	11.6	0.0	0.093	11.3	0.0	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4696)
DDE_Tnp_1	PF01609.21	gi|345007014|ref|YP_004809866.1|	-	0.031	13.9	0.1	0.085	12.5	0.1	1.7	1	1	0	1	1	1	0	Transposase	DDE	domain
DDE_Tnp_IS66	PF03050.14	gi|345007015|ref|YP_004809867.1|	-	7e-49	166.8	0.2	7e-49	166.8	0.2	2.0	2	1	0	2	2	2	1	Transposase	IS66	family
ZapB	PF06005.12	gi|345007015|ref|YP_004809867.1|	-	3e-09	37.2	6.3	9.7e-09	35.6	6.3	1.9	1	0	0	1	1	1	1	Cell	division	protein	ZapB
zf-IS66	PF13005.7	gi|345007015|ref|YP_004809867.1|	-	1.9e-05	25.0	4.3	4.5e-05	23.8	4.3	1.7	1	0	0	1	1	1	1	zinc-finger	binding	domain	of	transposase	IS66
YabA	PF06156.13	gi|345007015|ref|YP_004809867.1|	-	4.3e-05	24.1	4.2	0.00014	22.4	4.2	1.8	1	0	0	1	1	1	1	Initiation	control	protein	YabA
CASP_C	PF08172.12	gi|345007015|ref|YP_004809867.1|	-	0.00024	20.6	1.9	0.00039	19.9	1.9	1.2	1	0	0	1	1	1	1	CASP	C	terminal
JIP_LZII	PF16471.5	gi|345007015|ref|YP_004809867.1|	-	0.00056	20.0	3.4	0.0012	19.0	3.4	1.6	1	0	0	1	1	1	1	JNK-interacting	protein	leucine	zipper	II
bZIP_1	PF00170.21	gi|345007015|ref|YP_004809867.1|	-	0.0018	18.3	7.8	0.004	17.2	7.8	1.6	1	0	0	1	1	1	1	bZIP	transcription	factor
DDE_Tnp_IS240	PF13610.6	gi|345007015|ref|YP_004809867.1|	-	0.003	17.8	0.8	0.013	15.7	0.0	2.3	2	1	0	2	2	2	1	DDE	domain
SlyX	PF04102.12	gi|345007015|ref|YP_004809867.1|	-	0.0054	17.3	5.4	0.014	16.0	5.4	1.7	1	0	0	1	1	1	1	SlyX
NUDE_C	PF04880.13	gi|345007015|ref|YP_004809867.1|	-	0.013	16.0	4.4	0.034	14.6	4.4	1.6	1	0	0	1	1	1	0	NUDE	protein,	C-terminal	conserved	region
CCDC106	PF15794.5	gi|345007015|ref|YP_004809867.1|	-	0.02	14.6	3.6	0.042	13.6	3.6	1.4	1	0	0	1	1	1	0	Coiled-coil	domain-containing	protein	106
Cnn_1N	PF07989.11	gi|345007015|ref|YP_004809867.1|	-	0.026	14.7	6.4	0.056	13.6	6.4	1.5	1	0	0	1	1	1	0	Centrosomin	N-terminal	motif	1
SKA1	PF07160.12	gi|345007015|ref|YP_004809867.1|	-	0.029	14.2	0.9	0.057	13.3	0.9	1.4	1	0	0	1	1	1	0	Spindle	and	kinetochore-associated	protein	1
CENP-H	PF05837.12	gi|345007015|ref|YP_004809867.1|	-	0.03	14.7	3.3	0.072	13.5	3.3	1.6	1	0	0	1	1	1	0	Centromere	protein	H	(CENP-H)
DUF4201	PF13870.6	gi|345007015|ref|YP_004809867.1|	-	0.039	13.7	3.6	0.078	12.7	3.6	1.5	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4201)
RP-C_C	PF11800.8	gi|345007015|ref|YP_004809867.1|	-	0.04	14.0	1.2	0.082	13.0	1.2	1.5	1	0	0	1	1	1	0	Replication	protein	C	C-terminal	region
V_ATPase_I	PF01496.19	gi|345007015|ref|YP_004809867.1|	-	0.049	11.6	2.1	0.07	11.1	2.1	1.1	1	0	0	1	1	1	0	V-type	ATPase	116kDa	subunit	family
HSBP1	PF06825.12	gi|345007015|ref|YP_004809867.1|	-	0.06	13.2	0.3	0.11	12.3	0.3	1.4	1	0	0	1	1	1	0	Heat	shock	factor	binding	protein	1
XhlA	PF10779.9	gi|345007015|ref|YP_004809867.1|	-	0.067	13.4	5.8	0.18	12.0	5.8	1.7	1	0	0	1	1	1	0	Haemolysin	XhlA
FlaC_arch	PF05377.11	gi|345007015|ref|YP_004809867.1|	-	0.072	13.5	3.1	0.17	12.3	3.1	1.6	1	0	0	1	1	1	0	Flagella	accessory	protein	C	(FlaC)
TSC22	PF01166.18	gi|345007015|ref|YP_004809867.1|	-	0.087	13.1	14.9	0.11	12.8	7.5	3.3	2	1	1	3	3	3	0	TSC-22/dip/bun	family
HOOK	PF05622.12	gi|345007015|ref|YP_004809867.1|	-	0.093	10.9	3.9	0.13	10.3	3.9	1.1	1	0	0	1	1	1	0	HOOK	protein
GAS	PF13851.6	gi|345007015|ref|YP_004809867.1|	-	0.12	11.8	6.2	0.21	10.9	6.2	1.3	1	0	0	1	1	1	0	Growth-arrest	specific	micro-tubule	binding
DUF4988	PF16378.5	gi|345007015|ref|YP_004809867.1|	-	0.14	11.8	3.3	0.89	9.2	1.5	2.2	2	0	0	2	2	2	0	Domain	of	unknown	function
HALZ	PF02183.18	gi|345007015|ref|YP_004809867.1|	-	0.2	11.9	7.1	0.26	11.6	6.1	1.8	2	0	0	2	2	1	0	Homeobox	associated	leucine	zipper
EMP24_GP25L	PF01105.24	gi|345007015|ref|YP_004809867.1|	-	0.24	11.3	5.2	4.1	7.3	4.2	2.2	2	0	0	2	2	2	0	emp24/gp25L/p24	family/GOLD
Synaptobrevin	PF00957.21	gi|345007015|ref|YP_004809867.1|	-	0.25	11.1	1.7	0.43	10.4	1.7	1.3	1	0	0	1	1	1	0	Synaptobrevin
Spc24	PF08286.11	gi|345007015|ref|YP_004809867.1|	-	0.27	11.5	3.5	0.57	10.5	3.5	1.5	1	0	0	1	1	1	0	Spc24	subunit	of	Ndc80
DivIC	PF04977.15	gi|345007015|ref|YP_004809867.1|	-	0.31	10.8	8.4	0.77	9.6	8.0	1.9	1	1	0	1	1	1	0	Septum	formation	initiator
SpoVR	PF04293.13	gi|345007015|ref|YP_004809867.1|	-	0.35	9.5	4.7	0.55	8.9	4.7	1.2	1	0	0	1	1	1	0	SpoVR	like	protein
Shugoshin_N	PF07558.11	gi|345007015|ref|YP_004809867.1|	-	0.62	10.0	6.8	0.15	11.9	2.5	2.0	1	1	1	2	2	2	0	Shugoshin	N-terminal	coiled-coil	region
Jnk-SapK_ap_N	PF09744.9	gi|345007015|ref|YP_004809867.1|	-	0.68	10.1	7.3	1.9	8.7	7.3	1.7	1	0	0	1	1	1	0	JNK_SAPK-associated	protein-1
Chibby	PF14645.6	gi|345007015|ref|YP_004809867.1|	-	0.7	10.3	4.1	1.7	9.1	4.1	1.6	1	0	0	1	1	1	0	Chibby	family
APG6_N	PF17675.1	gi|345007015|ref|YP_004809867.1|	-	0.77	10.3	9.2	1.5	9.3	9.2	1.5	1	0	0	1	1	1	0	Apg6	coiled-coil	region
ADIP	PF11559.8	gi|345007015|ref|YP_004809867.1|	-	0.78	9.8	7.1	1.7	8.7	7.1	1.5	1	0	0	1	1	1	0	Afadin-	and	alpha	-actinin-Binding
Prefoldin_2	PF01920.20	gi|345007015|ref|YP_004809867.1|	-	0.92	9.5	8.3	1.8	8.6	8.3	1.4	1	0	0	1	1	1	0	Prefoldin	subunit
bZIP_2	PF07716.15	gi|345007015|ref|YP_004809867.1|	-	1.2	9.3	14.7	8.7	6.5	6.5	2.6	1	1	1	2	2	2	0	Basic	region	leucine	zipper
GIT_CC	PF16559.5	gi|345007015|ref|YP_004809867.1|	-	1.2	9.0	5.9	2.4	8.1	5.9	1.5	1	0	0	1	1	1	0	GIT	coiled-coil	Rho	guanine	nucleotide	exchange	factor
GrpE	PF01025.19	gi|345007015|ref|YP_004809867.1|	-	1.2	8.8	5.5	2.3	7.9	5.5	1.4	1	0	0	1	1	1	0	GrpE
DUF2205	PF10224.9	gi|345007015|ref|YP_004809867.1|	-	1.5	8.9	5.6	3.6	7.7	5.6	1.6	1	0	0	1	1	1	0	Short	coiled-coil	protein
Astro_capsid_p	PF12226.8	gi|345007015|ref|YP_004809867.1|	-	1.5	7.9	4.8	2.3	7.3	4.8	1.2	1	0	0	1	1	1	0	Turkey	astrovirus	capsid	protein
DUF3552	PF12072.8	gi|345007015|ref|YP_004809867.1|	-	2.1	7.7	7.5	3.7	6.9	7.5	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3552)
DUF3450	PF11932.8	gi|345007015|ref|YP_004809867.1|	-	2.3	7.4	8.2	0.46	9.8	3.0	2.3	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF3450)
NRBF2	PF08961.10	gi|345007015|ref|YP_004809867.1|	-	2.4	7.7	14.9	0.031	13.9	7.5	1.6	2	0	0	2	2	1	0	Nuclear	receptor-binding	factor	2,	autophagy	regulator
UPF0242	PF06785.11	gi|345007015|ref|YP_004809867.1|	-	7.3	6.6	7.8	2.4	8.2	5.0	1.6	2	0	0	2	2	1	0	Uncharacterised	protein	family	(UPF0242)	N-terminus
Helicase_C	PF00271.31	gi|345007016|ref|YP_004809868.1|	-	3.5e-17	62.7	0.5	9.7e-15	54.9	0.0	3.7	3	1	1	4	4	4	1	Helicase	conserved	C-terminal	domain
PLDc_2	PF13091.6	gi|345007016|ref|YP_004809868.1|	-	2.7e-14	53.2	0.0	2.2e-13	50.2	0.0	2.4	2	0	0	2	2	2	1	PLD-like	domain
SNF2_N	PF00176.23	gi|345007016|ref|YP_004809868.1|	-	4.1e-12	45.5	0.0	1.3e-07	30.7	0.1	2.4	2	0	0	2	2	2	2	SNF2	family	N-terminal	domain
ResIII	PF04851.15	gi|345007016|ref|YP_004809868.1|	-	2.8e-10	40.5	0.0	2e-09	37.7	0.0	2.5	2	1	0	2	2	2	1	Type	III	restriction	enzyme,	res	subunit
DUF2075	PF09848.9	gi|345007016|ref|YP_004809868.1|	-	0.00021	20.6	0.2	0.00098	18.5	0.0	2.1	2	0	0	2	2	2	1	Uncharacterized	conserved	protein	(DUF2075)
SWI2_SNF2	PF18766.1	gi|345007016|ref|YP_004809868.1|	-	0.00047	19.9	0.3	0.0015	18.2	0.3	1.8	1	1	0	1	1	1	1	SWI2/SNF2	ATPase
AAA_22	PF13401.6	gi|345007016|ref|YP_004809868.1|	-	0.09	13.1	0.1	1.1	9.6	0.0	3.0	2	1	1	3	3	3	0	AAA	domain
Osmo_CC	PF08946.10	gi|345007017|ref|YP_004809869.1|	-	0.094	13.0	0.7	0.17	12.1	0.7	1.4	1	0	0	1	1	1	0	Osmosensory	transporter	coiled	coil
Img2	PF05046.14	gi|345007017|ref|YP_004809869.1|	-	0.13	12.6	0.2	0.18	12.1	0.2	1.3	1	1	0	1	1	1	0	Mitochondrial	large	subunit	ribosomal	protein	(Img2)
DZR	PF12773.7	gi|345007018|ref|YP_004809870.1|	-	0.026	14.5	0.1	0.051	13.6	0.1	1.4	1	0	0	1	1	1	0	Double	zinc	ribbon
RNase_H_2	PF13482.6	gi|345007021|ref|YP_004809873.1|	-	0.0012	18.9	0.0	0.41	10.6	0.0	2.5	2	1	0	2	2	2	2	RNase_H	superfamily
DUF5126	PF17166.4	gi|345007023|ref|YP_004809875.1|	-	0.038	13.8	0.1	0.071	13.0	0.1	1.5	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF5126)
DDE_Tnp_1	PF01609.21	gi|345007024|ref|YP_004809876.1|	-	0.031	13.9	0.1	0.085	12.5	0.1	1.7	1	1	0	1	1	1	0	Transposase	DDE	domain
Glyco_hyd_101C	PF17451.2	gi|345007026|ref|YP_004809878.1|	-	0.032	14.5	0.2	0.05	13.9	0.2	1.3	1	0	0	1	1	1	0	Glycosyl	hydrolase	101	beta	sandwich	domain
LIM_bind	PF01803.16	gi|345007026|ref|YP_004809878.1|	-	0.17	11.4	0.0	0.22	11.0	0.0	1.1	1	0	0	1	1	1	0	LIM-domain	binding	protein
DDE_Tnp_1	PF01609.21	gi|345007030|ref|YP_004809882.1|	-	0.031	13.9	0.1	0.085	12.5	0.1	1.7	1	1	0	1	1	1	0	Transposase	DDE	domain
SlyX	PF04102.12	gi|345007031|ref|YP_004809883.1|	-	0.024	15.2	1.0	4.8	7.9	0.0	2.4	2	1	0	2	2	2	0	SlyX
TSNAXIP1_N	PF15739.5	gi|345007031|ref|YP_004809883.1|	-	0.14	12.5	0.6	10	6.5	0.0	2.1	2	0	0	2	2	2	0	Translin-associated	factor	X-interacting	N-terminus
PDDEXK_1	PF12705.7	gi|345007032|ref|YP_004809884.1|	-	1e-11	45.2	0.0	3.8e-11	43.4	0.0	2.0	1	1	0	1	1	1	1	PD-(D/E)XK	nuclease	superfamily
UvrD-helicase	PF00580.21	gi|345007033|ref|YP_004809885.1|	-	5.6e-51	173.9	0.2	2.1e-50	172.1	0.2	1.9	1	1	0	1	1	1	1	UvrD/REP	helicase	N-terminal	domain
UvrD_C	PF13361.6	gi|345007033|ref|YP_004809885.1|	-	1.7e-27	96.7	0.0	3.4e-17	62.9	0.0	2.2	2	0	0	2	2	2	2	UvrD-like	helicase	C-terminal	domain
AAA_19	PF13245.6	gi|345007033|ref|YP_004809885.1|	-	1.9e-26	93.2	0.0	1.4e-25	90.4	0.0	2.2	1	1	0	1	1	1	1	AAA	domain
UvrD_C_2	PF13538.6	gi|345007033|ref|YP_004809885.1|	-	1.9e-09	37.2	0.2	0.00034	20.4	0.1	2.8	2	0	0	2	2	2	2	UvrD-like	helicase	C-terminal	domain
AAA_30	PF13604.6	gi|345007033|ref|YP_004809885.1|	-	1.8e-07	31.1	0.0	3.5e-06	26.9	0.0	2.4	2	0	0	2	2	2	1	AAA	domain
PDDEXK_1	PF12705.7	gi|345007033|ref|YP_004809885.1|	-	1.6e-05	24.9	1.1	0.0001	22.3	0.1	2.5	2	1	0	2	2	2	1	PD-(D/E)XK	nuclease	superfamily
AAA_11	PF13086.6	gi|345007033|ref|YP_004809885.1|	-	0.00013	21.9	0.0	0.1	12.4	0.0	2.4	2	0	0	2	2	2	2	AAA	domain
AAA_12	PF13087.6	gi|345007033|ref|YP_004809885.1|	-	0.00078	19.1	0.0	0.087	12.4	0.0	2.7	2	1	0	2	2	2	1	AAA	domain
Viral_helicase1	PF01443.18	gi|345007033|ref|YP_004809885.1|	-	0.006	16.4	1.2	11	5.7	0.1	3.7	4	0	0	4	4	4	1	Viral	(Superfamily	1)	RNA	helicase
PhoH	PF02562.16	gi|345007033|ref|YP_004809885.1|	-	0.053	13.0	0.1	8.7	5.7	0.0	2.4	2	0	0	2	2	2	0	PhoH-like	protein
DUF1819	PF08849.11	gi|345007035|ref|YP_004809887.1|	-	2.8e-06	27.3	0.0	3.6e-06	26.9	0.0	1.2	1	0	0	1	1	1	1	Putative	inner	membrane	protein	(DUF1819)
AAA_16	PF13191.6	gi|345007036|ref|YP_004809888.1|	-	0.031	14.7	0.4	0.66	10.3	0.0	3.5	3	1	0	3	3	3	0	AAA	ATPase	domain
ABC_tran	PF00005.27	gi|345007036|ref|YP_004809888.1|	-	0.066	13.7	0.0	0.35	11.4	0.0	2.2	2	0	0	2	2	2	0	ABC	transporter
DUF1788	PF08747.11	gi|345007037|ref|YP_004809889.1|	-	4.7e-13	49.2	0.0	6.2e-13	48.8	0.0	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1788)
Tudor_3	PF18115.1	gi|345007037|ref|YP_004809889.1|	-	0.058	13.2	0.1	0.14	12.0	0.1	1.6	1	0	0	1	1	1	0	DNA	repair	protein	Crb2	Tudor	domain
Bac_DnaA	PF00308.18	gi|345007038|ref|YP_004809890.1|	-	0.026	14.4	0.1	0.073	12.9	0.0	1.8	2	0	0	2	2	2	0	Bacterial	dnaA	protein
PIN	PF01850.21	gi|345007039|ref|YP_004809891.1|	-	4.9e-16	59.3	0.6	5.5e-16	59.2	0.6	1.0	1	0	0	1	1	1	1	PIN	domain
TPR_14	PF13428.6	gi|345007039|ref|YP_004809891.1|	-	0.22	12.4	1.6	80	4.5	0.1	3.4	2	1	1	3	3	3	0	Tetratricopeptide	repeat
MazE_antitoxin	PF04014.18	gi|345007040|ref|YP_004809892.1|	-	0.00031	20.6	0.2	0.00051	19.9	0.2	1.3	1	0	0	1	1	1	1	Antidote-toxin	recognition	MazE,	bacterial	antitoxin
PrlF_antitoxin	PF15937.5	gi|345007040|ref|YP_004809892.1|	-	0.0026	18.1	0.0	0.0034	17.8	0.0	1.2	1	0	0	1	1	1	1	prlF	antitoxin	for	toxin	YhaV_toxin
zf-HC2	PF13490.6	gi|345007040|ref|YP_004809892.1|	-	0.073	13.3	0.2	0.13	12.5	0.2	1.5	1	0	0	1	1	1	0	Putative	zinc-finger
Inhibitor_I53	PF11714.8	gi|345007040|ref|YP_004809892.1|	-	0.16	12.2	0.6	0.26	11.5	0.5	1.4	1	1	0	1	1	1	0	Thrombin	inhibitor	Madanin
N6_Mtase	PF02384.16	gi|345007041|ref|YP_004809893.1|	-	3.9e-07	29.7	0.0	0.00078	18.8	0.0	3.2	2	1	1	3	3	3	2	N-6	DNA	Methylase
UPF0020	PF01170.18	gi|345007041|ref|YP_004809893.1|	-	0.012	15.4	0.0	1.3	8.7	0.0	2.6	2	0	0	2	2	2	0	Putative	RNA	methylase	family	UPF0020
DUF496	PF04363.12	gi|345007041|ref|YP_004809893.1|	-	0.03	14.3	0.1	10	6.2	0.0	2.8	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF496)
Methyltransf_31	PF13847.6	gi|345007041|ref|YP_004809893.1|	-	0.12	12.1	0.0	0.5	10.2	0.0	2.1	2	0	0	2	2	2	0	Methyltransferase	domain
2-Hacid_dh	PF00389.30	gi|345007042|ref|YP_004809894.1|	-	0.094	12.4	0.0	0.15	11.8	0.0	1.5	1	1	0	1	1	1	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	catalytic	domain
PglZ	PF08665.12	gi|345007043|ref|YP_004809895.1|	-	3.3e-12	46.8	0.0	6.2e-12	46.0	0.0	1.5	1	0	0	1	1	1	1	PglZ	domain
Helicase_C	PF00271.31	gi|345007044|ref|YP_004809896.1|	-	4.5e-24	84.9	0.0	1.2e-23	83.5	0.0	1.8	1	0	0	1	1	1	1	Helicase	conserved	C-terminal	domain
SNF2_N	PF00176.23	gi|345007044|ref|YP_004809896.1|	-	9e-18	64.1	0.0	6.7e-16	57.9	0.0	2.3	1	1	0	1	1	1	1	SNF2	family	N-terminal	domain
ResIII	PF04851.15	gi|345007044|ref|YP_004809896.1|	-	8.5e-14	51.9	0.0	3.1e-13	50.1	0.0	2.0	1	0	0	1	1	1	1	Type	III	restriction	enzyme,	res	subunit
DEAD	PF00270.29	gi|345007044|ref|YP_004809896.1|	-	6.6e-06	26.0	0.0	1.8e-05	24.6	0.0	1.8	1	0	0	1	1	1	1	DEAD/DEAH	box	helicase
RapA_C	PF12137.8	gi|345007044|ref|YP_004809896.1|	-	7.4e-05	21.9	0.1	7.4e-05	21.9	0.1	2.8	2	1	0	2	2	2	1	RNA	polymerase	recycling	family	C-terminal
Helicase_C_4	PF13871.6	gi|345007044|ref|YP_004809896.1|	-	0.00046	20.0	0.1	0.05	13.3	0.0	2.5	2	0	0	2	2	2	1	C-terminal	domain	on	Strawberry	notch	homologue
DUF2075	PF09848.9	gi|345007044|ref|YP_004809896.1|	-	0.012	14.8	1.3	0.062	12.5	0.1	2.6	3	0	0	3	3	3	0	Uncharacterized	conserved	protein	(DUF2075)
AAA_34	PF13872.6	gi|345007044|ref|YP_004809896.1|	-	0.017	14.0	0.4	0.13	11.2	0.4	2.1	1	1	0	1	1	1	0	P-loop	containing	NTP	hydrolase	pore-1
DUF4611	PF15387.6	gi|345007044|ref|YP_004809896.1|	-	1.3	9.3	5.8	0.58	10.4	0.4	2.9	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4611)
Herpes_UL25	PF01499.16	gi|345007044|ref|YP_004809896.1|	-	1.6	7.2	5.6	2.8	6.4	5.6	1.3	1	0	0	1	1	1	0	Herpesvirus	UL25	family
DUF790	PF05626.11	gi|345007045|ref|YP_004809897.1|	-	4.2e-138	460.3	0.0	4.8e-138	460.1	0.0	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF790)
DUF3268	PF11672.8	gi|345007045|ref|YP_004809897.1|	-	0.18	12.2	0.0	0.33	11.3	0.0	1.5	1	0	0	1	1	1	0	zinc-finger-containing	domain
ERCC3_RAD25_C	PF16203.5	gi|345007046|ref|YP_004809898.1|	-	2.7e-22	79.2	0.2	4.1e-22	78.6	0.2	1.2	1	0	0	1	1	1	1	ERCC3/RAD25/XPB	C-terminal	helicase
ResIII	PF04851.15	gi|345007046|ref|YP_004809898.1|	-	4e-22	79.0	0.0	1.6e-21	77.1	0.0	1.9	2	0	0	2	2	2	1	Type	III	restriction	enzyme,	res	subunit
Helicase_C	PF00271.31	gi|345007046|ref|YP_004809898.1|	-	2e-17	63.5	0.1	2e-17	63.5	0.1	1.8	2	0	0	2	2	2	1	Helicase	conserved	C-terminal	domain
XPB_DRD	PF18458.1	gi|345007046|ref|YP_004809898.1|	-	3.3e-13	49.3	1.3	1.5e-12	47.2	1.3	2.2	1	0	0	1	1	1	1	Xeroderma	pigmentosum	group	B	helicase	damage	recognition	domain
DEAD	PF00270.29	gi|345007046|ref|YP_004809898.1|	-	4.4e-08	33.1	0.0	1e-07	31.9	0.0	1.7	1	0	0	1	1	1	1	DEAD/DEAH	box	helicase
IstB_IS21	PF01695.17	gi|345007046|ref|YP_004809898.1|	-	0.034	13.9	0.0	0.52	10.0	0.0	2.6	2	0	0	2	2	2	0	IstB-like	ATP	binding	protein
Helicase_C_2	PF13307.6	gi|345007046|ref|YP_004809898.1|	-	0.064	13.4	1.0	2.8	8.1	0.0	3.0	1	1	2	3	3	3	0	Helicase	C-terminal	domain
PRiA4_ORF3	PF07929.11	gi|345007047|ref|YP_004809899.1|	-	8.9e-18	64.6	0.0	1.3e-17	64.1	0.0	1.2	1	0	0	1	1	1	1	Plasmid	pRiA4b	ORF-3-like	protein
C1_1	PF00130.22	gi|345007049|ref|YP_004809901.1|	-	0.0022	17.9	2.9	0.0022	17.9	2.9	2.1	1	1	1	2	2	2	1	Phorbol	esters/diacylglycerol	binding	domain	(C1	domain)
Ribosomal_L40e	PF01020.17	gi|345007049|ref|YP_004809901.1|	-	0.0024	17.7	6.1	0.004	17.0	6.1	1.4	1	0	0	1	1	1	1	Ribosomal	L40e	family
zf-C3HC4_3	PF13920.6	gi|345007049|ref|YP_004809901.1|	-	0.0066	16.3	6.8	0.0066	16.3	6.8	1.6	1	1	1	2	2	2	1	Zinc	finger,	C3HC4	type	(RING	finger)
zf-HIT	PF04438.16	gi|345007049|ref|YP_004809901.1|	-	0.007	16.2	11.9	2.5	8.1	8.0	3.1	2	1	0	2	2	2	2	HIT	zinc	finger
zf-CRD	PF17979.1	gi|345007049|ref|YP_004809901.1|	-	0.022	14.9	5.2	0.026	14.6	5.2	1.1	1	0	0	1	1	1	0	Cysteine	rich	domain	with	multizinc	binding	regions
zinc-ribbons_6	PF07191.12	gi|345007049|ref|YP_004809901.1|	-	0.25	11.4	7.8	1.3	9.1	1.9	2.2	1	1	1	2	2	2	0	zinc-ribbons
Zn-ribbon_8	PF09723.10	gi|345007049|ref|YP_004809901.1|	-	0.61	10.3	15.9	14	5.9	10.8	3.2	2	1	0	2	2	2	0	Zinc	ribbon	domain
zf-ACC	PF17848.1	gi|345007049|ref|YP_004809901.1|	-	0.77	9.9	0.1	0.77	9.9	0.1	3.9	3	1	0	3	3	3	0	Acetyl-coA	carboxylase	zinc	finger	domain
zf_C2H2_10	PF18414.1	gi|345007049|ref|YP_004809901.1|	-	1.2	8.7	8.4	1.7	8.3	0.8	2.6	2	1	0	2	2	2	0	C2H2	type	zinc-finger
HypA	PF01155.19	gi|345007049|ref|YP_004809901.1|	-	1.4	8.9	8.4	10	6.2	5.9	2.0	1	1	1	2	2	2	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
zf_UBZ	PF18439.1	gi|345007049|ref|YP_004809901.1|	-	1.9	8.1	13.5	7	6.3	0.3	3.8	3	1	1	4	4	4	0	Ubiquitin-Binding	Zinc	Finger
FYVE	PF01363.21	gi|345007049|ref|YP_004809901.1|	-	5.8	7.1	14.4	1.3e+02	2.8	14.5	2.3	1	1	0	1	1	1	0	FYVE	zinc	finger
zf-C2H2_4	PF13894.6	gi|345007049|ref|YP_004809901.1|	-	6.2	7.9	14.7	2.6	9.1	0.5	3.7	2	1	1	3	3	3	0	C2H2-type	zinc	finger
SATase_N	PF06426.14	gi|345007050|ref|YP_004809902.1|	-	0.03	14.7	0.1	0.031	14.7	0.1	1.1	1	0	0	1	1	1	0	Serine	acetyltransferase,	N-terminal
TrbC	PF04956.13	gi|345007051|ref|YP_004809903.1|	-	6.8e-05	23.0	0.8	9.7e-05	22.5	0.8	1.2	1	0	0	1	1	1	1	TrbC/VIRB2	family
DUF2304	PF10066.9	gi|345007051|ref|YP_004809903.1|	-	0.07	13.4	0.0	3.7	7.8	0.0	2.2	2	1	0	2	2	2	0	Uncharacterized	conserved	protein	(DUF2304)
DUF4624	PF15417.6	gi|345007052|ref|YP_004809904.1|	-	0.24	11.2	1.9	0.35	10.7	0.2	2.1	2	1	1	3	3	3	0	Domain	of	unknown	function	(DUF4624)
FlgD_ig	PF13860.6	gi|345007053|ref|YP_004809905.1|	-	0.0011	18.8	0.3	0.0023	17.7	0.3	1.6	1	0	0	1	1	1	1	FlgD	Ig-like	domain
DUF3558	PF12079.8	gi|345007053|ref|YP_004809905.1|	-	0.98	9.4	7.8	0.56	10.2	2.7	2.3	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3558)
DUF883	PF05957.13	gi|345007054|ref|YP_004809906.1|	-	0.16	12.6	3.9	0.43	11.2	3.9	1.6	1	0	0	1	1	1	0	Bacterial	protein	of	unknown	function	(DUF883)
TraG-D_C	PF12696.7	gi|345007055|ref|YP_004809907.1|	-	0.00018	21.5	0.0	0.00038	20.4	0.0	1.5	1	0	0	1	1	1	1	TraM	recognition	site	of	TraD	and	TraG
AAA_22	PF13401.6	gi|345007055|ref|YP_004809907.1|	-	0.0024	18.1	0.3	0.15	12.4	0.2	2.8	2	0	0	2	2	2	1	AAA	domain
AAA_16	PF13191.6	gi|345007055|ref|YP_004809907.1|	-	0.0045	17.4	1.0	0.25	11.7	0.2	3.3	3	0	0	3	3	3	1	AAA	ATPase	domain
Zot	PF05707.12	gi|345007055|ref|YP_004809907.1|	-	0.0087	15.7	0.1	0.099	12.3	0.1	2.2	2	0	0	2	2	2	1	Zonular	occludens	toxin	(Zot)
OpcA_G6PD_assem	PF10128.9	gi|345007055|ref|YP_004809907.1|	-	0.022	14.3	0.3	0.086	12.3	0.0	2.0	2	0	0	2	2	2	0	Glucose-6-phosphate	dehydrogenase	subunit
DUF3487	PF11990.8	gi|345007055|ref|YP_004809907.1|	-	0.055	13.4	0.4	0.11	12.4	0.4	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3487)
TAT_ubiq	PF07706.12	gi|345007056|ref|YP_004809908.1|	-	0.12	12.6	0.0	0.23	11.7	0.0	1.4	1	0	0	1	1	1	0	Aminotransferase	ubiquitination	site
Rsa3	PF14615.6	gi|345007056|ref|YP_004809908.1|	-	0.16	11.6	0.0	0.33	10.5	0.0	1.6	1	0	0	1	1	1	0	Ribosome-assembly	protein	3
TrwB_AAD_bind	PF10412.9	gi|345007057|ref|YP_004809909.1|	-	5.5e-09	35.4	0.0	5.2e-05	22.3	0.0	2.2	2	0	0	2	2	2	2	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
TraG-D_C	PF12696.7	gi|345007057|ref|YP_004809909.1|	-	2.1e-06	27.7	0.0	4.8e-06	26.6	0.0	1.6	1	0	0	1	1	1	1	TraM	recognition	site	of	TraD	and	TraG
T4SS-DNA_transf	PF02534.14	gi|345007057|ref|YP_004809909.1|	-	3.1e-05	23.0	0.0	0.0011	17.9	0.1	2.1	2	0	0	2	2	2	1	Type	IV	secretory	system	Conjugative	DNA	transfer
FtsK_SpoIIIE	PF01580.18	gi|345007057|ref|YP_004809909.1|	-	0.012	15.0	0.0	0.59	9.4	0.0	2.5	2	0	0	2	2	2	0	FtsK/SpoIIIE	family
HHH_6	PF14579.6	gi|345007057|ref|YP_004809909.1|	-	0.021	15.1	0.0	0.049	13.9	0.0	1.6	1	0	0	1	1	1	0	Helix-hairpin-helix	motif
DUF87	PF01935.17	gi|345007057|ref|YP_004809909.1|	-	0.034	14.2	0.1	0.17	12.0	0.0	2.3	3	1	0	3	3	3	0	Helicase	HerA,	central	domain
NACHT	PF05729.12	gi|345007057|ref|YP_004809909.1|	-	0.059	13.3	0.0	0.24	11.3	0.0	2.0	2	0	0	2	2	2	0	NACHT	domain
Pox_D5	PF03288.16	gi|345007057|ref|YP_004809909.1|	-	0.075	13.5	0.0	0.15	12.5	0.0	1.5	1	0	0	1	1	1	0	Poxvirus	D5	protein-like
AAA_22	PF13401.6	gi|345007057|ref|YP_004809909.1|	-	0.11	12.8	0.1	4.2	7.6	0.0	2.8	2	0	0	2	2	2	0	AAA	domain
ATG16	PF08614.11	gi|345007058|ref|YP_004809910.1|	-	0.00016	22.0	2.2	0.00016	22.0	2.2	1.8	2	0	0	2	2	2	1	Autophagy	protein	16	(ATG16)
HAP1_N	PF04849.13	gi|345007058|ref|YP_004809910.1|	-	0.0042	16.3	2.4	0.0073	15.6	2.4	1.3	1	0	0	1	1	1	1	HAP1	N-terminal	conserved	region
DivIC	PF04977.15	gi|345007058|ref|YP_004809910.1|	-	0.0092	15.7	1.1	0.025	14.3	1.1	1.7	1	0	0	1	1	1	1	Septum	formation	initiator
SlyX	PF04102.12	gi|345007058|ref|YP_004809910.1|	-	0.024	15.2	1.7	0.024	15.2	1.7	2.6	3	0	0	3	3	3	0	SlyX
DUF1192	PF06698.11	gi|345007058|ref|YP_004809910.1|	-	0.031	14.3	2.3	0.081	13.0	2.3	1.7	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1192)
DUF1664	PF07889.12	gi|345007058|ref|YP_004809910.1|	-	0.036	14.1	1.2	0.063	13.3	0.5	1.7	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1664)
DUF2205	PF10224.9	gi|345007058|ref|YP_004809910.1|	-	0.061	13.3	0.5	0.12	12.4	0.5	1.4	1	0	0	1	1	1	0	Short	coiled-coil	protein
Lebercilin	PF15619.6	gi|345007058|ref|YP_004809910.1|	-	0.1	12.2	3.3	0.17	11.5	3.3	1.3	1	0	0	1	1	1	0	Ciliary	protein	causing	Leber	congenital	amaurosis	disease
ZapB	PF06005.12	gi|345007058|ref|YP_004809910.1|	-	0.11	12.9	4.3	0.23	11.9	4.3	1.5	1	0	0	1	1	1	0	Cell	division	protein	ZapB
DUF16	PF01519.16	gi|345007058|ref|YP_004809910.1|	-	0.12	12.9	1.7	0.14	12.7	0.4	1.8	2	0	0	2	2	1	0	Protein	of	unknown	function	DUF16
Atg14	PF10186.9	gi|345007058|ref|YP_004809910.1|	-	0.13	11.3	0.3	0.21	10.6	0.3	1.2	1	0	0	1	1	1	0	Vacuolar	sorting	38	and	autophagy-related	subunit	14
Cep57_CLD_2	PF14197.6	gi|345007058|ref|YP_004809910.1|	-	0.16	12.1	7.4	0.38	10.9	7.4	1.5	1	0	0	1	1	1	0	Centrosome	localisation	domain	of	PPC89
ADIP	PF11559.8	gi|345007058|ref|YP_004809910.1|	-	0.19	11.8	3.1	0.38	10.8	3.1	1.4	1	0	0	1	1	1	0	Afadin-	and	alpha	-actinin-Binding
Prefoldin	PF02996.17	gi|345007058|ref|YP_004809910.1|	-	0.2	11.6	2.8	0.21	11.5	1.0	1.9	2	0	0	2	2	2	0	Prefoldin	subunit
HSBP1	PF06825.12	gi|345007058|ref|YP_004809910.1|	-	0.39	10.6	2.9	13	5.7	0.1	2.6	2	1	1	3	3	2	0	Heat	shock	factor	binding	protein	1
DASH_Spc19	PF08287.11	gi|345007058|ref|YP_004809910.1|	-	1.8	8.4	6.7	1.4	8.8	2.3	2.2	2	0	0	2	2	2	0	Spc19
DUF4407	PF14362.6	gi|345007058|ref|YP_004809910.1|	-	5.3	6.3	5.9	0.4	10.0	1.0	1.6	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4407)
MarR_2	PF12802.7	gi|345007062|ref|YP_004809914.1|	-	2e-07	30.8	0.0	2.8e-07	30.3	0.0	1.3	1	0	0	1	1	1	1	MarR	family
MarR	PF01047.22	gi|345007062|ref|YP_004809914.1|	-	0.00083	19.2	0.0	0.0014	18.5	0.0	1.4	1	0	0	1	1	1	1	MarR	family
TrmB	PF01978.19	gi|345007062|ref|YP_004809914.1|	-	0.003	17.4	0.0	0.0069	16.2	0.0	1.6	1	1	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_IclR	PF09339.10	gi|345007062|ref|YP_004809914.1|	-	0.0052	16.6	0.0	0.0075	16.0	0.0	1.3	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
Rrf2	PF02082.20	gi|345007062|ref|YP_004809914.1|	-	0.0068	16.7	0.0	0.0095	16.3	0.0	1.2	1	0	0	1	1	1	1	Transcriptional	regulator
HTH_27	PF13463.6	gi|345007062|ref|YP_004809914.1|	-	0.015	15.7	0.0	0.025	15.1	0.0	1.4	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
HTH_24	PF13412.6	gi|345007062|ref|YP_004809914.1|	-	0.017	14.7	0.0	0.026	14.1	0.0	1.2	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
HTH_5	PF01022.20	gi|345007062|ref|YP_004809914.1|	-	0.02	14.8	0.0	0.028	14.3	0.0	1.3	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
HTH_Crp_2	PF13545.6	gi|345007062|ref|YP_004809914.1|	-	0.08	12.9	0.0	0.13	12.3	0.0	1.3	1	0	0	1	1	1	0	Crp-like	helix-turn-helix	domain
HTH_34	PF13601.6	gi|345007062|ref|YP_004809914.1|	-	0.1	12.8	0.0	0.16	12.2	0.0	1.3	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
PemK_toxin	PF02452.17	gi|345007063|ref|YP_004809915.1|	-	0.0021	18.5	0.0	0.0026	18.1	0.0	1.2	1	0	0	1	1	1	1	PemK-like,	MazF-like	toxin	of	type	II	toxin-antitoxin	system
CENP-X	PF09415.10	gi|345007064|ref|YP_004809916.1|	-	0.097	13.0	0.0	0.13	12.6	0.0	1.4	1	1	0	1	1	1	0	CENP-S	associating	Centromere	protein	X
COX2_TM	PF02790.15	gi|345007066|ref|YP_004809918.1|	-	0.096	12.8	0.2	6	7.1	0.1	2.0	2	0	0	2	2	2	0	Cytochrome	C	oxidase	subunit	II,	transmembrane	domain
Gram_pos_anchor	PF00746.21	gi|345007066|ref|YP_004809918.1|	-	0.11	12.4	1.0	4.1	7.4	0.0	2.2	2	0	0	2	2	2	0	LPXTG	cell	wall	anchor	motif
HTH_Tnp_Tc5	PF03221.16	gi|345007068|ref|YP_004809920.1|	-	0.11	12.6	0.4	0.14	12.2	0.4	1.4	1	1	0	1	1	1	0	Tc5	transposase	DNA-binding	domain
HTH_20	PF12840.7	gi|345007069|ref|YP_004809921.1|	-	7.6e-06	25.9	0.3	1.8e-05	24.7	0.3	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain
TrmB	PF01978.19	gi|345007069|ref|YP_004809921.1|	-	4.4e-05	23.3	0.0	8.1e-05	22.4	0.0	1.4	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
GntR	PF00392.21	gi|345007069|ref|YP_004809921.1|	-	0.0019	17.8	0.2	0.0054	16.4	0.1	1.8	2	0	0	2	2	2	1	Bacterial	regulatory	proteins,	gntR	family
HTH_5	PF01022.20	gi|345007069|ref|YP_004809921.1|	-	0.0084	16.0	0.0	0.014	15.2	0.0	1.3	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
MarR_2	PF12802.7	gi|345007069|ref|YP_004809921.1|	-	0.012	15.5	0.1	0.021	14.7	0.1	1.4	1	0	0	1	1	1	0	MarR	family
HTH_Crp_2	PF13545.6	gi|345007069|ref|YP_004809921.1|	-	0.014	15.4	0.0	0.028	14.4	0.0	1.5	1	0	0	1	1	1	0	Crp-like	helix-turn-helix	domain
HTH_23	PF13384.6	gi|345007069|ref|YP_004809921.1|	-	0.021	14.6	0.0	0.047	13.5	0.0	1.5	1	0	0	1	1	1	0	Homeodomain-like	domain
HTH_11	PF08279.12	gi|345007069|ref|YP_004809921.1|	-	0.043	13.8	0.1	0.082	12.9	0.1	1.4	1	0	0	1	1	1	0	HTH	domain
RP-C	PF03428.13	gi|345007069|ref|YP_004809921.1|	-	0.045	13.4	0.0	0.081	12.6	0.0	1.3	1	0	0	1	1	1	0	Replication	protein	C	N-terminal	domain
Rrf2	PF02082.20	gi|345007069|ref|YP_004809921.1|	-	0.069	13.5	0.0	1.8	9.0	0.0	2.2	2	0	0	2	2	2	0	Transcriptional	regulator
HTH_IclR	PF09339.10	gi|345007069|ref|YP_004809921.1|	-	0.14	12.0	0.2	0.27	11.0	0.2	1.5	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
DDE_Tnp_IS66	PF03050.14	gi|345007071|ref|YP_004809923.1|	-	7e-49	166.8	0.2	7e-49	166.8	0.2	2.0	2	1	0	2	2	2	1	Transposase	IS66	family
ZapB	PF06005.12	gi|345007071|ref|YP_004809923.1|	-	3e-09	37.2	6.3	9.7e-09	35.6	6.3	1.9	1	0	0	1	1	1	1	Cell	division	protein	ZapB
zf-IS66	PF13005.7	gi|345007071|ref|YP_004809923.1|	-	1.9e-05	25.0	4.3	4.5e-05	23.8	4.3	1.7	1	0	0	1	1	1	1	zinc-finger	binding	domain	of	transposase	IS66
YabA	PF06156.13	gi|345007071|ref|YP_004809923.1|	-	4.3e-05	24.1	4.2	0.00014	22.4	4.2	1.8	1	0	0	1	1	1	1	Initiation	control	protein	YabA
CASP_C	PF08172.12	gi|345007071|ref|YP_004809923.1|	-	0.00024	20.6	1.9	0.00039	19.9	1.9	1.2	1	0	0	1	1	1	1	CASP	C	terminal
JIP_LZII	PF16471.5	gi|345007071|ref|YP_004809923.1|	-	0.00056	20.0	3.4	0.0012	19.0	3.4	1.6	1	0	0	1	1	1	1	JNK-interacting	protein	leucine	zipper	II
bZIP_1	PF00170.21	gi|345007071|ref|YP_004809923.1|	-	0.0018	18.3	7.8	0.004	17.2	7.8	1.6	1	0	0	1	1	1	1	bZIP	transcription	factor
DDE_Tnp_IS240	PF13610.6	gi|345007071|ref|YP_004809923.1|	-	0.003	17.8	0.8	0.013	15.7	0.0	2.3	2	1	0	2	2	2	1	DDE	domain
SlyX	PF04102.12	gi|345007071|ref|YP_004809923.1|	-	0.0054	17.3	5.4	0.014	16.0	5.4	1.7	1	0	0	1	1	1	1	SlyX
NUDE_C	PF04880.13	gi|345007071|ref|YP_004809923.1|	-	0.013	16.0	4.4	0.034	14.6	4.4	1.6	1	0	0	1	1	1	0	NUDE	protein,	C-terminal	conserved	region
CCDC106	PF15794.5	gi|345007071|ref|YP_004809923.1|	-	0.02	14.6	3.6	0.042	13.6	3.6	1.4	1	0	0	1	1	1	0	Coiled-coil	domain-containing	protein	106
Cnn_1N	PF07989.11	gi|345007071|ref|YP_004809923.1|	-	0.026	14.7	6.4	0.056	13.6	6.4	1.5	1	0	0	1	1	1	0	Centrosomin	N-terminal	motif	1
SKA1	PF07160.12	gi|345007071|ref|YP_004809923.1|	-	0.029	14.2	0.9	0.057	13.3	0.9	1.4	1	0	0	1	1	1	0	Spindle	and	kinetochore-associated	protein	1
CENP-H	PF05837.12	gi|345007071|ref|YP_004809923.1|	-	0.03	14.7	3.3	0.072	13.5	3.3	1.6	1	0	0	1	1	1	0	Centromere	protein	H	(CENP-H)
DUF4201	PF13870.6	gi|345007071|ref|YP_004809923.1|	-	0.039	13.7	3.6	0.078	12.7	3.6	1.5	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4201)
RP-C_C	PF11800.8	gi|345007071|ref|YP_004809923.1|	-	0.04	14.0	1.2	0.082	13.0	1.2	1.5	1	0	0	1	1	1	0	Replication	protein	C	C-terminal	region
V_ATPase_I	PF01496.19	gi|345007071|ref|YP_004809923.1|	-	0.049	11.6	2.1	0.07	11.1	2.1	1.1	1	0	0	1	1	1	0	V-type	ATPase	116kDa	subunit	family
HSBP1	PF06825.12	gi|345007071|ref|YP_004809923.1|	-	0.06	13.2	0.3	0.11	12.3	0.3	1.4	1	0	0	1	1	1	0	Heat	shock	factor	binding	protein	1
XhlA	PF10779.9	gi|345007071|ref|YP_004809923.1|	-	0.067	13.4	5.8	0.18	12.0	5.8	1.7	1	0	0	1	1	1	0	Haemolysin	XhlA
FlaC_arch	PF05377.11	gi|345007071|ref|YP_004809923.1|	-	0.072	13.5	3.1	0.17	12.3	3.1	1.6	1	0	0	1	1	1	0	Flagella	accessory	protein	C	(FlaC)
TSC22	PF01166.18	gi|345007071|ref|YP_004809923.1|	-	0.087	13.1	14.9	0.11	12.8	7.5	3.3	2	1	1	3	3	3	0	TSC-22/dip/bun	family
HOOK	PF05622.12	gi|345007071|ref|YP_004809923.1|	-	0.093	10.9	3.9	0.13	10.3	3.9	1.1	1	0	0	1	1	1	0	HOOK	protein
GAS	PF13851.6	gi|345007071|ref|YP_004809923.1|	-	0.12	11.8	6.2	0.21	10.9	6.2	1.3	1	0	0	1	1	1	0	Growth-arrest	specific	micro-tubule	binding
DUF4988	PF16378.5	gi|345007071|ref|YP_004809923.1|	-	0.14	11.8	3.3	0.89	9.2	1.5	2.2	2	0	0	2	2	2	0	Domain	of	unknown	function
HALZ	PF02183.18	gi|345007071|ref|YP_004809923.1|	-	0.2	11.9	7.1	0.26	11.6	6.1	1.8	2	0	0	2	2	1	0	Homeobox	associated	leucine	zipper
EMP24_GP25L	PF01105.24	gi|345007071|ref|YP_004809923.1|	-	0.24	11.3	5.2	4.1	7.3	4.2	2.2	2	0	0	2	2	2	0	emp24/gp25L/p24	family/GOLD
Synaptobrevin	PF00957.21	gi|345007071|ref|YP_004809923.1|	-	0.25	11.1	1.7	0.43	10.4	1.7	1.3	1	0	0	1	1	1	0	Synaptobrevin
Spc24	PF08286.11	gi|345007071|ref|YP_004809923.1|	-	0.27	11.5	3.5	0.57	10.5	3.5	1.5	1	0	0	1	1	1	0	Spc24	subunit	of	Ndc80
DivIC	PF04977.15	gi|345007071|ref|YP_004809923.1|	-	0.31	10.8	8.4	0.77	9.6	8.0	1.9	1	1	0	1	1	1	0	Septum	formation	initiator
SpoVR	PF04293.13	gi|345007071|ref|YP_004809923.1|	-	0.35	9.5	4.7	0.55	8.9	4.7	1.2	1	0	0	1	1	1	0	SpoVR	like	protein
Shugoshin_N	PF07558.11	gi|345007071|ref|YP_004809923.1|	-	0.62	10.0	6.8	0.15	11.9	2.5	2.0	1	1	1	2	2	2	0	Shugoshin	N-terminal	coiled-coil	region
Jnk-SapK_ap_N	PF09744.9	gi|345007071|ref|YP_004809923.1|	-	0.68	10.1	7.3	1.9	8.7	7.3	1.7	1	0	0	1	1	1	0	JNK_SAPK-associated	protein-1
Chibby	PF14645.6	gi|345007071|ref|YP_004809923.1|	-	0.7	10.3	4.1	1.7	9.1	4.1	1.6	1	0	0	1	1	1	0	Chibby	family
APG6_N	PF17675.1	gi|345007071|ref|YP_004809923.1|	-	0.77	10.3	9.2	1.5	9.3	9.2	1.5	1	0	0	1	1	1	0	Apg6	coiled-coil	region
ADIP	PF11559.8	gi|345007071|ref|YP_004809923.1|	-	0.78	9.8	7.1	1.7	8.7	7.1	1.5	1	0	0	1	1	1	0	Afadin-	and	alpha	-actinin-Binding
Prefoldin_2	PF01920.20	gi|345007071|ref|YP_004809923.1|	-	0.92	9.5	8.3	1.8	8.6	8.3	1.4	1	0	0	1	1	1	0	Prefoldin	subunit
bZIP_2	PF07716.15	gi|345007071|ref|YP_004809923.1|	-	1.2	9.3	14.7	8.7	6.5	6.5	2.6	1	1	1	2	2	2	0	Basic	region	leucine	zipper
GIT_CC	PF16559.5	gi|345007071|ref|YP_004809923.1|	-	1.2	9.0	5.9	2.4	8.1	5.9	1.5	1	0	0	1	1	1	0	GIT	coiled-coil	Rho	guanine	nucleotide	exchange	factor
GrpE	PF01025.19	gi|345007071|ref|YP_004809923.1|	-	1.2	8.8	5.5	2.3	7.9	5.5	1.4	1	0	0	1	1	1	0	GrpE
DUF2205	PF10224.9	gi|345007071|ref|YP_004809923.1|	-	1.5	8.9	5.6	3.6	7.7	5.6	1.6	1	0	0	1	1	1	0	Short	coiled-coil	protein
Astro_capsid_p	PF12226.8	gi|345007071|ref|YP_004809923.1|	-	1.5	7.9	4.8	2.3	7.3	4.8	1.2	1	0	0	1	1	1	0	Turkey	astrovirus	capsid	protein
DUF3552	PF12072.8	gi|345007071|ref|YP_004809923.1|	-	2.1	7.7	7.5	3.7	6.9	7.5	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3552)
DUF3450	PF11932.8	gi|345007071|ref|YP_004809923.1|	-	2.3	7.4	8.2	0.46	9.8	3.0	2.3	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF3450)
NRBF2	PF08961.10	gi|345007071|ref|YP_004809923.1|	-	2.4	7.7	14.9	0.031	13.9	7.5	1.6	2	0	0	2	2	1	0	Nuclear	receptor-binding	factor	2,	autophagy	regulator
UPF0242	PF06785.11	gi|345007071|ref|YP_004809923.1|	-	7.3	6.6	7.8	2.4	8.2	5.0	1.6	2	0	0	2	2	1	0	Uncharacterised	protein	family	(UPF0242)	N-terminus
SH3_1	PF00018.28	gi|345007073|ref|YP_004809925.1|	-	0.14	11.8	0.9	3.7	7.2	0.1	3.3	3	1	1	4	4	4	0	SH3	domain
TFIIB	PF00382.19	gi|345007074|ref|YP_004809926.1|	-	4.9e-30	103.4	0.5	2.5e-16	59.5	0.7	2.7	3	0	0	3	3	3	2	Transcription	factor	TFIIB	repeat
TF_Zn_Ribbon	PF08271.12	gi|345007074|ref|YP_004809926.1|	-	3.5e-13	48.8	2.8	6.3e-13	48.0	2.8	1.5	1	0	0	1	1	1	1	TFIIB	zinc-binding
RB_B	PF01857.20	gi|345007074|ref|YP_004809926.1|	-	0.017	15.1	0.0	0.029	14.4	0.0	1.3	1	0	0	1	1	1	0	Retinoblastoma-associated	protein	B	domain
DZR	PF12773.7	gi|345007074|ref|YP_004809926.1|	-	0.017	15.1	1.3	0.036	14.1	1.3	1.5	1	0	0	1	1	1	0	Double	zinc	ribbon
OrfB_Zn_ribbon	PF07282.11	gi|345007074|ref|YP_004809926.1|	-	0.098	12.6	1.6	0.34	10.9	1.1	2.1	2	0	0	2	2	2	0	Putative	transposase	DNA-binding	domain
UPF0547	PF10571.9	gi|345007074|ref|YP_004809926.1|	-	0.38	10.9	2.2	0.89	9.7	2.2	1.6	1	0	0	1	1	1	0	Uncharacterised	protein	family	UPF0547
Zn-ribbon_8	PF09723.10	gi|345007074|ref|YP_004809926.1|	-	1.1	9.5	4.2	5.9	7.1	0.3	2.6	1	1	2	3	3	3	0	Zinc	ribbon	domain
DDE_Tnp_1	PF01609.21	gi|345007076|ref|YP_004809928.1|	-	0.031	13.9	0.1	0.085	12.5	0.1	1.7	1	1	0	1	1	1	0	Transposase	DDE	domain
Response_reg	PF00072.24	gi|345007079|ref|YP_004809931.1|	-	2.6e-19	69.4	0.0	6.6e-19	68.1	0.0	1.7	1	0	0	1	1	1	1	Response	regulator	receiver	domain
PAS	PF00989.25	gi|345007079|ref|YP_004809931.1|	-	3.8e-18	65.5	0.2	3.5e-17	62.4	0.0	2.6	2	0	0	2	2	2	1	PAS	fold
PAS_3	PF08447.12	gi|345007079|ref|YP_004809931.1|	-	6.9e-15	55.1	0.0	2.4e-14	53.4	0.0	1.9	1	0	0	1	1	1	1	PAS	fold
PAS_4	PF08448.10	gi|345007079|ref|YP_004809931.1|	-	1.3e-14	54.4	0.1	6.1e-14	52.2	0.2	2.2	2	0	0	2	2	2	1	PAS	fold
HATPase_c	PF02518.26	gi|345007079|ref|YP_004809931.1|	-	5.3e-12	46.2	0.5	2.7e-11	43.9	0.1	2.4	3	0	0	3	3	3	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
PAS_9	PF13426.7	gi|345007079|ref|YP_004809931.1|	-	9.2e-12	45.1	0.1	4.7e-11	42.9	0.0	2.3	2	0	0	2	2	2	1	PAS	domain
GAF_2	PF13185.6	gi|345007079|ref|YP_004809931.1|	-	6.5e-11	42.7	2.8	3.5e-10	40.3	0.2	2.8	3	0	0	3	3	2	1	GAF	domain
HisKA	PF00512.25	gi|345007079|ref|YP_004809931.1|	-	4.1e-09	36.4	3.8	9.6e-08	32.0	0.4	3.6	3	0	0	3	3	3	1	His	Kinase	A	(phospho-acceptor)	domain
PAS_8	PF13188.7	gi|345007079|ref|YP_004809931.1|	-	2.3e-07	30.7	0.4	9.1e-07	28.8	0.0	2.3	2	0	0	2	2	2	1	PAS	domain
PAS_11	PF14598.6	gi|345007079|ref|YP_004809931.1|	-	5.4e-06	26.5	0.0	1.4e-05	25.2	0.0	1.7	1	0	0	1	1	1	1	PAS	domain
GAF_3	PF13492.6	gi|345007079|ref|YP_004809931.1|	-	0.0012	19.2	0.0	0.006	16.9	0.0	2.2	2	0	0	2	2	2	1	GAF	domain
DUF3696	PF12476.8	gi|345007079|ref|YP_004809931.1|	-	0.012	16.0	2.5	6.7	7.2	0.4	3.2	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF3696)
PAS_10	PF13596.6	gi|345007079|ref|YP_004809931.1|	-	0.046	14.3	0.0	0.19	12.3	0.0	2.1	1	0	0	1	1	1	0	PAS	domain
RseA_C	PF03873.13	gi|345007079|ref|YP_004809931.1|	-	3.1	8.1	4.4	5.8	7.2	0.0	3.3	4	0	0	4	4	4	0	Anti	sigma-E	protein	RseA,	C-terminal	domain
adh_short_C2	PF13561.6	gi|345007080|ref|YP_004809932.1|	-	1.4e-65	221.1	0.6	1.7e-65	220.8	0.6	1.0	1	0	0	1	1	1	1	Enoyl-(Acyl	carrier	protein)	reductase
adh_short	PF00106.25	gi|345007080|ref|YP_004809932.1|	-	2.5e-52	177.2	0.1	3e-52	176.9	0.1	1.1	1	0	0	1	1	1	1	short	chain	dehydrogenase
KR	PF08659.10	gi|345007080|ref|YP_004809932.1|	-	2.5e-11	43.8	0.0	3.8e-11	43.2	0.0	1.4	1	0	0	1	1	1	1	KR	domain
Epimerase	PF01370.21	gi|345007080|ref|YP_004809932.1|	-	6.1e-05	22.6	0.1	0.00068	19.2	0.1	2.0	2	0	0	2	2	2	1	NAD	dependent	epimerase/dehydratase	family
THF_DHG_CYH_C	PF02882.19	gi|345007080|ref|YP_004809932.1|	-	0.003	16.9	1.0	0.005	16.2	0.4	1.7	2	0	0	2	2	2	1	Tetrahydrofolate	dehydrogenase/cyclohydrolase,	NAD(P)-binding	domain
DUF4081	PF13312.6	gi|345007080|ref|YP_004809932.1|	-	0.022	15.0	0.0	0.051	13.8	0.0	1.6	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4081)
RmlD_sub_bind	PF04321.17	gi|345007080|ref|YP_004809932.1|	-	0.022	13.8	0.1	0.04	13.0	0.1	1.4	1	0	0	1	1	1	0	RmlD	substrate	binding	domain
3HCDH_N	PF02737.18	gi|345007080|ref|YP_004809932.1|	-	0.023	14.6	0.2	0.044	13.7	0.2	1.4	1	0	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
NAD_binding_10	PF13460.6	gi|345007080|ref|YP_004809932.1|	-	0.024	14.5	1.0	0.033	14.1	0.2	1.8	2	0	0	2	2	2	0	NAD(P)H-binding
F420_oxidored	PF03807.17	gi|345007080|ref|YP_004809932.1|	-	0.032	14.8	0.0	0.14	12.7	0.0	2.1	2	0	0	2	2	2	0	NADP	oxidoreductase	coenzyme	F420-dependent
2-Hacid_dh_C	PF02826.19	gi|345007080|ref|YP_004809932.1|	-	0.033	13.5	0.0	0.058	12.8	0.0	1.5	1	0	0	1	1	1	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
APH	PF01636.23	gi|345007081|ref|YP_004809933.1|	-	2.8e-43	148.6	5.5	3.6e-43	148.2	5.5	1.2	1	0	0	1	1	1	1	Phosphotransferase	enzyme	family
EcKinase	PF02958.20	gi|345007081|ref|YP_004809933.1|	-	0.00013	21.4	0.0	0.00021	20.7	0.0	1.3	1	0	0	1	1	1	1	Ecdysteroid	kinase
DUF1679	PF07914.11	gi|345007081|ref|YP_004809933.1|	-	0.08	11.8	0.0	0.11	11.3	0.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1679)
HTH_33	PF13592.6	gi|345007081|ref|YP_004809933.1|	-	0.094	12.4	0.1	14	5.4	0.0	2.4	2	0	0	2	2	2	0	Winged	helix-turn	helix
Acyl-CoA_dh_1	PF00441.24	gi|345007082|ref|YP_004809934.1|	-	1.4e-41	142.2	1.3	2.5e-41	141.4	1.3	1.4	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	C-terminal	domain
Acyl-CoA_dh_M	PF02770.19	gi|345007082|ref|YP_004809934.1|	-	1.1e-21	76.9	0.0	2.1e-21	75.9	0.0	1.5	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	middle	domain
Acyl-CoA_dh_2	PF08028.11	gi|345007082|ref|YP_004809934.1|	-	3.6e-19	69.4	1.3	6.9e-19	68.4	1.3	1.5	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	C-terminal	domain
Acyl-CoA_dh_N	PF02771.16	gi|345007082|ref|YP_004809934.1|	-	9e-18	65.0	0.0	3e-17	63.3	0.0	1.9	2	0	0	2	2	2	1	Acyl-CoA	dehydrogenase,	N-terminal	domain
HpaB_N	PF11794.8	gi|345007082|ref|YP_004809934.1|	-	0.0083	15.8	0.9	0.053	13.2	0.0	2.4	3	0	0	3	3	3	1	4-hydroxyphenylacetate	3-hydroxylase	N	terminal
AMP-binding	PF00501.28	gi|345007083|ref|YP_004809935.1|	-	2.9e-95	319.4	0.0	3.3e-95	319.2	0.0	1.0	1	0	0	1	1	1	1	AMP-binding	enzyme
AMP-binding_C	PF13193.6	gi|345007083|ref|YP_004809935.1|	-	7.7e-18	65.3	0.1	1.7e-17	64.2	0.1	1.6	1	0	0	1	1	1	1	AMP-binding	enzyme	C-terminal	domain
adh_short_C2	PF13561.6	gi|345007084|ref|YP_004809936.1|	-	1.3e-55	188.5	2.3	3.1e-55	187.3	2.3	1.5	1	1	0	1	1	1	1	Enoyl-(Acyl	carrier	protein)	reductase
adh_short	PF00106.25	gi|345007084|ref|YP_004809936.1|	-	4.4e-46	156.8	1.1	2.8e-45	154.2	1.1	1.9	1	1	0	1	1	1	1	short	chain	dehydrogenase
KR	PF08659.10	gi|345007084|ref|YP_004809936.1|	-	2.2e-08	34.2	1.3	3.4e-08	33.6	1.3	1.5	1	1	0	1	1	1	1	KR	domain
OCD_Mu_crystall	PF02423.15	gi|345007085|ref|YP_004809937.1|	-	2.9e-64	217.0	0.1	3.8e-64	216.6	0.1	1.1	1	0	0	1	1	1	1	Ornithine	cyclodeaminase/mu-crystallin	family
Shikimate_DH	PF01488.20	gi|345007085|ref|YP_004809937.1|	-	3.6e-07	30.3	0.0	5.9e-07	29.6	0.0	1.2	1	0	0	1	1	1	1	Shikimate	/	quinate	5-dehydrogenase
F420_oxidored	PF03807.17	gi|345007085|ref|YP_004809937.1|	-	7.4e-06	26.5	0.0	1.4e-05	25.6	0.0	1.4	1	0	0	1	1	1	1	NADP	oxidoreductase	coenzyme	F420-dependent
NAD_binding_10	PF13460.6	gi|345007085|ref|YP_004809937.1|	-	0.018	15.0	0.3	0.031	14.2	0.3	1.4	1	0	0	1	1	1	0	NAD(P)H-binding
NAD_binding_2	PF03446.15	gi|345007085|ref|YP_004809937.1|	-	0.078	13.2	0.0	0.16	12.1	0.0	1.6	1	0	0	1	1	1	0	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
FAA_hydrolase	PF01557.18	gi|345007086|ref|YP_004809938.1|	-	3.5e-61	206.6	0.1	4.2e-61	206.4	0.1	1.1	1	0	0	1	1	1	1	Fumarylacetoacetate	(FAA)	hydrolase	family
DUF2437	PF10370.9	gi|345007086|ref|YP_004809938.1|	-	0.0085	17.0	0.1	0.12	13.3	0.0	2.7	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF2437)
Glyoxalase	PF00903.25	gi|345007087|ref|YP_004809939.1|	-	9.2e-10	38.8	0.0	1.2e-09	38.4	0.0	1.2	1	0	0	1	1	1	1	Glyoxalase/Bleomycin	resistance	protein/Dioxygenase	superfamily
Glyoxalase_4	PF13669.6	gi|345007087|ref|YP_004809939.1|	-	6.9e-08	32.7	0.1	3.6e-07	30.4	0.1	1.8	1	1	1	2	2	2	1	Glyoxalase/Bleomycin	resistance	protein/Dioxygenase	superfamily
Glyoxalase_6	PF18029.1	gi|345007087|ref|YP_004809939.1|	-	0.0034	18.1	0.6	0.0045	17.8	0.6	1.2	1	0	0	1	1	1	1	Glyoxalase-like	domain
Peptidase_S15	PF02129.18	gi|345007088|ref|YP_004809940.1|	-	2.7e-63	214.1	0.7	3.5e-63	213.7	0.7	1.1	1	0	0	1	1	1	1	X-Pro	dipeptidyl-peptidase	(S15	family)
PepX_C	PF08530.10	gi|345007088|ref|YP_004809940.1|	-	2.8e-42	145.2	0.0	4e-42	144.7	0.0	1.2	1	0	0	1	1	1	1	X-Pro	dipeptidyl-peptidase	C-terminal	non-catalytic	domain
Hydrolase_4	PF12146.8	gi|345007088|ref|YP_004809940.1|	-	0.0098	15.2	0.1	0.016	14.4	0.1	1.2	1	0	0	1	1	1	1	Serine	aminopeptidase,	S33
Peptidase_S9	PF00326.21	gi|345007088|ref|YP_004809940.1|	-	0.019	14.4	0.3	0.044	13.3	0.1	1.6	2	0	0	2	2	2	0	Prolyl	oligopeptidase	family
Abhydrolase_1	PF00561.20	gi|345007088|ref|YP_004809940.1|	-	0.022	14.4	0.1	0.071	12.7	0.1	1.8	1	1	0	1	1	1	0	alpha/beta	hydrolase	fold
BPD_transp_1	PF00528.22	gi|345007089|ref|YP_004809941.1|	-	1.8e-26	93.0	6.4	2.8e-26	92.4	6.4	1.3	1	0	0	1	1	1	1	Binding-protein-dependent	transport	system	inner	membrane	component
OppC_N	PF12911.7	gi|345007089|ref|YP_004809941.1|	-	1.4e-08	34.5	0.2	5.5e-08	32.7	0.0	2.1	2	0	0	2	2	2	1	N-terminal	TM	domain	of	oligopeptide	transport	permease	C
DUF998	PF06197.13	gi|345007089|ref|YP_004809941.1|	-	0.013	15.1	0.9	0.013	15.1	0.9	3.2	3	1	0	3	3	3	0	Protein	of	unknown	function	(DUF998)
BPD_transp_1	PF00528.22	gi|345007090|ref|YP_004809942.1|	-	4.2e-39	134.2	15.0	4.2e-39	134.2	15.0	1.6	2	0	0	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
SBP_bac_5	PF00496.22	gi|345007091|ref|YP_004809943.1|	-	4.3e-65	220.1	6.0	5.6e-65	219.7	6.0	1.1	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	proteins,	family	5	Middle
ADH_zinc_N	PF00107.26	gi|345007092|ref|YP_004809944.1|	-	7.2e-32	110.1	0.1	1e-31	109.6	0.1	1.2	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
ADH_N	PF08240.12	gi|345007092|ref|YP_004809944.1|	-	3.7e-21	75.1	0.2	7.5e-21	74.1	0.2	1.5	1	0	0	1	1	1	1	Alcohol	dehydrogenase	GroES-like	domain
ADH_zinc_N_2	PF13602.6	gi|345007092|ref|YP_004809944.1|	-	1.1e-15	58.8	0.0	2e-15	58.0	0.0	1.4	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
AlaDh_PNT_C	PF01262.21	gi|345007092|ref|YP_004809944.1|	-	9.4e-05	21.8	0.9	0.00016	21.1	0.6	1.4	1	1	0	1	1	1	1	Alanine	dehydrogenase/PNT,	C-terminal	domain
ADH_N_2	PF16884.5	gi|345007092|ref|YP_004809944.1|	-	0.0003	20.7	0.0	0.00055	19.8	0.0	1.4	1	0	0	1	1	1	1	N-terminal	domain	of	oxidoreductase
adh_short	PF00106.25	gi|345007092|ref|YP_004809944.1|	-	0.0026	17.3	0.4	0.0049	16.4	0.2	1.5	2	0	0	2	2	2	1	short	chain	dehydrogenase
ELFV_dehydrog	PF00208.21	gi|345007092|ref|YP_004809944.1|	-	0.014	15.1	0.0	0.021	14.6	0.0	1.2	1	0	0	1	1	1	0	Glutamate/Leucine/Phenylalanine/Valine	dehydrogenase
THF_DHG_CYH_C	PF02882.19	gi|345007092|ref|YP_004809944.1|	-	0.036	13.4	0.0	0.064	12.6	0.0	1.3	1	0	0	1	1	1	0	Tetrahydrofolate	dehydrogenase/cyclohydrolase,	NAD(P)-binding	domain
Epimerase	PF01370.21	gi|345007092|ref|YP_004809944.1|	-	0.039	13.4	0.4	0.057	12.9	0.4	1.2	1	0	0	1	1	1	0	NAD	dependent	epimerase/dehydratase	family
2-Hacid_dh_C	PF02826.19	gi|345007092|ref|YP_004809944.1|	-	0.049	13.0	0.0	0.082	12.3	0.0	1.3	1	0	0	1	1	1	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
XdhC_C	PF13478.6	gi|345007092|ref|YP_004809944.1|	-	0.11	13.0	0.1	0.16	12.5	0.1	1.3	1	0	0	1	1	1	0	XdhC	Rossmann	domain
Eno-Rase_NADH_b	PF12242.8	gi|345007092|ref|YP_004809944.1|	-	0.24	11.2	0.8	0.44	10.3	0.8	1.4	1	0	0	1	1	1	0	NAD(P)H	binding	domain	of	trans-2-enoyl-CoA	reductase
TPP_enzyme_N	PF02776.18	gi|345007093|ref|YP_004809945.1|	-	1.3e-44	151.8	0.4	2.2e-42	144.6	0.4	2.4	2	0	0	2	2	2	2	Thiamine	pyrophosphate	enzyme,	N-terminal	TPP	binding	domain
TPP_enzyme_C	PF02775.21	gi|345007093|ref|YP_004809945.1|	-	2.6e-34	118.2	0.1	1.5e-33	115.7	0.0	2.2	2	0	0	2	2	2	1	Thiamine	pyrophosphate	enzyme,	C-terminal	TPP	binding	domain
TPP_enzyme_M	PF00205.22	gi|345007093|ref|YP_004809945.1|	-	9.3e-31	106.4	0.0	1.9e-30	105.4	0.0	1.6	1	0	0	1	1	1	1	Thiamine	pyrophosphate	enzyme,	central	domain
Peptidase_M55	PF04951.13	gi|345007093|ref|YP_004809945.1|	-	0.018	14.5	0.0	0.059	12.8	0.0	1.8	2	0	0	2	2	2	0	D-aminopeptidase
Rieske	PF00355.26	gi|345007094|ref|YP_004809946.1|	-	5.9e-15	55.0	0.0	1.3e-14	53.8	0.0	1.6	1	1	0	1	1	1	1	Rieske	[2Fe-2S]	domain
Rieske_2	PF13806.6	gi|345007094|ref|YP_004809946.1|	-	3.1e-11	43.1	0.0	2e-10	40.6	0.0	1.9	1	1	0	1	1	1	1	Rieske-like	[2Fe-2S]	domain
Amidohydro_2	PF04909.14	gi|345007095|ref|YP_004809947.1|	-	2.1e-32	113.1	0.4	2.4e-32	112.9	0.4	1.2	1	0	0	1	1	1	1	Amidohydrolase
Ribosomal_L50	PF10501.9	gi|345007096|ref|YP_004809948.1|	-	0.16	12.1	0.0	0.24	11.6	0.0	1.2	1	0	0	1	1	1	0	Ribosomal	subunit	39S
2-Hacid_dh_C	PF02826.19	gi|345007097|ref|YP_004809949.1|	-	5.9e-55	185.4	0.0	8.1e-55	184.9	0.0	1.2	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
2-Hacid_dh	PF00389.30	gi|345007097|ref|YP_004809949.1|	-	3.8e-21	75.1	0.0	4.7e-21	74.8	0.0	1.1	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	catalytic	domain
UDPG_MGDP_dh_C	PF03720.15	gi|345007097|ref|YP_004809949.1|	-	0.0056	17.1	0.0	0.62	10.5	0.0	2.8	3	0	0	3	3	3	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	UDP	binding	domain
MmgE_PrpD	PF03972.14	gi|345007098|ref|YP_004809950.1|	-	1.2e-82	277.9	7.1	1.4e-82	277.6	7.1	1.0	1	0	0	1	1	1	1	MmgE/PrpD	family
MLTR_LBD	PF17765.1	gi|345007098|ref|YP_004809950.1|	-	0.061	13.5	3.9	3.8	7.6	0.0	2.8	2	1	1	3	3	3	0	MmyB-like	transcription	regulator	ligand	binding	domain
ABC_tran	PF00005.27	gi|345007099|ref|YP_004809951.1|	-	1.1e-32	113.4	0.0	1.6e-32	112.9	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
oligo_HPY	PF08352.12	gi|345007099|ref|YP_004809951.1|	-	2.1e-16	60.2	0.3	4.4e-16	59.2	0.3	1.6	1	0	0	1	1	1	1	Oligopeptide/dipeptide	transporter,	C-terminal	region
AAA_21	PF13304.6	gi|345007099|ref|YP_004809951.1|	-	9.7e-08	32.2	0.2	5.4e-05	23.1	0.1	2.3	1	1	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_22	PF13401.6	gi|345007099|ref|YP_004809951.1|	-	2.9e-05	24.3	0.2	9.7e-05	22.7	0.2	1.8	1	1	0	1	1	1	1	AAA	domain
Sigma54_activat	PF00158.26	gi|345007099|ref|YP_004809951.1|	-	0.00038	20.2	0.1	0.02	14.6	0.0	2.2	2	0	0	2	2	2	1	Sigma-54	interaction	domain
SMC_N	PF02463.19	gi|345007099|ref|YP_004809951.1|	-	0.00055	19.4	0.0	0.24	10.8	0.0	2.1	2	0	0	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
AAA_16	PF13191.6	gi|345007099|ref|YP_004809951.1|	-	0.0037	17.7	0.1	0.0067	16.8	0.1	1.6	1	1	0	1	1	1	1	AAA	ATPase	domain
RsgA_GTPase	PF03193.16	gi|345007099|ref|YP_004809951.1|	-	0.0044	16.9	0.4	0.0083	16.0	0.0	1.6	2	0	0	2	2	2	1	RsgA	GTPase
AAA_29	PF13555.6	gi|345007099|ref|YP_004809951.1|	-	0.0063	16.2	0.0	0.012	15.4	0.0	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
Rad17	PF03215.15	gi|345007099|ref|YP_004809951.1|	-	0.0079	16.1	0.0	0.015	15.2	0.0	1.4	1	0	0	1	1	1	1	Rad17	P-loop	domain
TniB	PF05621.11	gi|345007099|ref|YP_004809951.1|	-	0.01	15.3	0.0	3.7	6.9	0.0	2.2	2	0	0	2	2	2	0	Bacterial	TniB	protein
AAA	PF00004.29	gi|345007099|ref|YP_004809951.1|	-	0.056	13.9	0.0	0.16	12.4	0.0	1.8	2	0	0	2	2	2	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
NB-ARC	PF00931.22	gi|345007099|ref|YP_004809951.1|	-	0.059	12.5	0.0	0.09	11.9	0.0	1.2	1	0	0	1	1	1	0	NB-ARC	domain
NACHT	PF05729.12	gi|345007099|ref|YP_004809951.1|	-	0.11	12.4	0.0	0.19	11.6	0.0	1.4	1	0	0	1	1	1	0	NACHT	domain
AAA_33	PF13671.6	gi|345007099|ref|YP_004809951.1|	-	0.12	12.6	0.0	0.17	12.0	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
IIGP	PF05049.13	gi|345007099|ref|YP_004809951.1|	-	0.15	11.1	0.2	0.22	10.5	0.2	1.2	1	0	0	1	1	1	0	Interferon-inducible	GTPase	(IIGP)
RNA_helicase	PF00910.22	gi|345007099|ref|YP_004809951.1|	-	0.18	12.2	0.0	0.46	10.9	0.0	1.7	2	0	0	2	2	1	0	RNA	helicase
AAA_5	PF07728.14	gi|345007099|ref|YP_004809951.1|	-	0.18	11.8	0.2	0.49	10.4	0.0	1.8	2	0	0	2	2	2	0	AAA	domain	(dynein-related	subfamily)
AAA_24	PF13479.6	gi|345007099|ref|YP_004809951.1|	-	0.18	11.5	0.0	0.32	10.7	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
ATPase_2	PF01637.18	gi|345007099|ref|YP_004809951.1|	-	0.19	11.6	0.0	0.27	11.1	0.0	1.3	1	0	0	1	1	1	0	ATPase	domain	predominantly	from	Archaea
ABC_tran	PF00005.27	gi|345007100|ref|YP_004809952.1|	-	8.2e-30	104.1	0.0	1.1e-29	103.6	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
oligo_HPY	PF08352.12	gi|345007100|ref|YP_004809952.1|	-	5.7e-19	68.4	1.4	8.8e-19	67.8	0.5	1.8	2	0	0	2	2	2	1	Oligopeptide/dipeptide	transporter,	C-terminal	region
AAA_21	PF13304.6	gi|345007100|ref|YP_004809952.1|	-	1.7e-06	28.1	0.2	0.00069	19.5	0.1	2.1	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|345007100|ref|YP_004809952.1|	-	0.00045	19.7	0.0	0.00069	19.1	0.0	1.3	1	0	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA	PF00004.29	gi|345007100|ref|YP_004809952.1|	-	0.0015	18.9	0.0	0.0036	17.7	0.0	1.7	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_29	PF13555.6	gi|345007100|ref|YP_004809952.1|	-	0.019	14.7	0.0	0.034	13.9	0.0	1.3	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
AAA_22	PF13401.6	gi|345007100|ref|YP_004809952.1|	-	0.02	15.2	1.2	0.15	12.3	1.2	2.1	1	1	0	1	1	1	0	AAA	domain
RsgA_GTPase	PF03193.16	gi|345007100|ref|YP_004809952.1|	-	0.036	14.0	0.0	0.058	13.3	0.0	1.3	1	0	0	1	1	1	0	RsgA	GTPase
AAA_16	PF13191.6	gi|345007100|ref|YP_004809952.1|	-	0.062	13.7	0.0	0.1	12.9	0.0	1.5	1	0	0	1	1	1	0	AAA	ATPase	domain
AAA_33	PF13671.6	gi|345007100|ref|YP_004809952.1|	-	0.12	12.5	0.0	0.2	11.8	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
MFS_1	PF07690.16	gi|345007101|ref|YP_004809953.1|	-	5.9e-44	150.4	46.6	1.6e-43	149.0	38.2	2.0	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
MFS_2	PF13347.6	gi|345007101|ref|YP_004809953.1|	-	0.008	14.8	28.0	0.0082	14.8	5.5	2.9	1	1	2	3	3	3	2	MFS/sugar	transport	protein
MFS_1_like	PF12832.7	gi|345007101|ref|YP_004809953.1|	-	0.016	14.0	12.3	0.089	11.6	0.2	2.3	1	1	1	2	2	2	0	MFS_1	like	family
PTR2	PF00854.21	gi|345007101|ref|YP_004809953.1|	-	0.043	12.6	15.9	0.021	13.7	1.7	2.2	2	0	0	2	2	2	0	POT	family
SPC12	PF06645.13	gi|345007101|ref|YP_004809953.1|	-	0.29	11.3	0.1	0.29	11.3	0.1	4.3	5	0	0	5	5	5	0	Microsomal	signal	peptidase	12	kDa	subunit	(SPC12)
TRI12	PF06609.13	gi|345007101|ref|YP_004809953.1|	-	0.53	8.6	15.6	0.0055	15.2	5.0	2.0	1	1	0	2	2	2	0	Fungal	trichothecene	efflux	pump	(TRI12)
OATP	PF03137.20	gi|345007101|ref|YP_004809953.1|	-	6.7	4.9	10.4	0.29	9.3	0.8	2.5	1	1	0	2	2	2	0	Organic	Anion	Transporter	Polypeptide	(OATP)	family
AcetylCoA_hyd_C	PF13336.6	gi|345007102|ref|YP_004809954.1|	-	8.5e-44	149.2	0.0	1.2e-43	148.7	0.0	1.2	1	0	0	1	1	1	1	Acetyl-CoA	hydrolase/transferase	C-terminal	domain
AcetylCoA_hydro	PF02550.15	gi|345007102|ref|YP_004809954.1|	-	1.2e-14	54.8	0.0	3.8e-14	53.1	0.0	1.8	1	1	0	1	1	1	1	Acetyl-CoA	hydrolase/transferase	N-terminal	domain
CitF	PF04223.12	gi|345007102|ref|YP_004809954.1|	-	8.5e-06	24.9	0.1	1.4e-05	24.2	0.1	1.4	1	0	0	1	1	1	1	Citrate	lyase,	alpha	subunit	(CitF)
CoA_trans	PF01144.23	gi|345007102|ref|YP_004809954.1|	-	6e-05	22.6	0.0	9.2e-05	21.9	0.0	1.3	1	0	0	1	1	1	1	Coenzyme	A	transferase
ADSL_C	PF10397.9	gi|345007102|ref|YP_004809954.1|	-	0.094	13.3	0.0	0.27	11.8	0.0	1.8	1	0	0	1	1	1	0	Adenylosuccinate	lyase	C-terminus
MaoC_dehydratas	PF01575.19	gi|345007103|ref|YP_004809955.1|	-	1.6e-23	82.6	0.3	2.1e-23	82.2	0.3	1.1	1	0	0	1	1	1	1	MaoC	like	domain
MaoC_dehydrat_N	PF13452.6	gi|345007103|ref|YP_004809955.1|	-	1.2e-07	31.9	0.1	1.7e-07	31.4	0.1	1.2	1	0	0	1	1	1	1	N-terminal	half	of	MaoC	dehydratase
Acyl-CoA_dh_1	PF00441.24	gi|345007104|ref|YP_004809956.1|	-	6.9e-38	130.2	2.3	1.2e-37	129.5	2.3	1.4	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	C-terminal	domain
Acyl-CoA_dh_N	PF02771.16	gi|345007104|ref|YP_004809956.1|	-	5.3e-25	88.3	0.0	1.3e-24	87.0	0.0	1.7	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	N-terminal	domain
Acyl-CoA_dh_M	PF02770.19	gi|345007104|ref|YP_004809956.1|	-	5.1e-21	74.7	0.0	8.3e-21	74.0	0.0	1.4	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	middle	domain
Acyl-CoA_dh_2	PF08028.11	gi|345007104|ref|YP_004809956.1|	-	7.9e-21	74.7	7.4	1.4e-20	73.9	7.4	1.4	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	C-terminal	domain
IclR	PF01614.18	gi|345007105|ref|YP_004809957.1|	-	4.3e-35	120.4	0.0	1.1e-34	119.1	0.0	1.7	2	0	0	2	2	2	1	Bacterial	transcriptional	regulator
HTH_IclR	PF09339.10	gi|345007105|ref|YP_004809957.1|	-	4.4e-13	48.8	0.2	6.7e-12	45.0	0.0	2.5	2	1	0	2	2	2	1	IclR	helix-turn-helix	domain
MarR_2	PF12802.7	gi|345007105|ref|YP_004809957.1|	-	4.3e-08	32.9	0.0	2e-07	30.8	0.0	2.1	3	0	0	3	3	2	1	MarR	family
HTH_24	PF13412.6	gi|345007105|ref|YP_004809957.1|	-	8.6e-08	31.6	0.0	1.8e-07	30.6	0.0	1.6	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_5	PF01022.20	gi|345007105|ref|YP_004809957.1|	-	8.5e-07	28.8	0.0	1.8e-06	27.7	0.0	1.5	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_20	PF12840.7	gi|345007105|ref|YP_004809957.1|	-	2.1e-06	27.7	0.0	5.6e-06	26.3	0.0	1.7	1	0	0	1	1	1	1	Helix-turn-helix	domain
MarR	PF01047.22	gi|345007105|ref|YP_004809957.1|	-	1.3e-05	25.0	0.1	7.5e-05	22.6	0.0	2.1	2	0	0	2	2	2	1	MarR	family
HTH_38	PF13936.6	gi|345007105|ref|YP_004809957.1|	-	0.00015	21.5	0.0	0.00049	19.8	0.0	1.8	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_Crp_2	PF13545.6	gi|345007105|ref|YP_004809957.1|	-	0.00028	20.8	0.1	0.34	10.9	0.0	2.4	2	0	0	2	2	2	2	Crp-like	helix-turn-helix	domain
HTH_40	PF14493.6	gi|345007105|ref|YP_004809957.1|	-	0.00046	20.6	0.0	0.0011	19.3	0.0	1.7	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_27	PF13463.6	gi|345007105|ref|YP_004809957.1|	-	0.00069	20.1	0.2	0.0022	18.5	0.1	1.8	2	0	0	2	2	2	1	Winged	helix	DNA-binding	domain
HTH_11	PF08279.12	gi|345007105|ref|YP_004809957.1|	-	0.00097	19.0	0.0	0.0059	16.5	0.0	2.3	2	0	0	2	2	2	1	HTH	domain
TrmB	PF01978.19	gi|345007105|ref|YP_004809957.1|	-	0.0013	18.6	0.0	0.0031	17.4	0.0	1.6	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_DeoR	PF08220.12	gi|345007105|ref|YP_004809957.1|	-	0.0019	17.9	0.1	0.0054	16.4	0.1	1.7	1	0	0	1	1	1	1	DeoR-like	helix-turn-helix	domain
HTH_23	PF13384.6	gi|345007105|ref|YP_004809957.1|	-	0.0052	16.5	0.0	0.014	15.2	0.0	1.7	1	0	0	1	1	1	1	Homeodomain-like	domain
GerE	PF00196.19	gi|345007105|ref|YP_004809957.1|	-	0.0058	16.2	0.0	0.012	15.2	0.0	1.4	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	luxR	family
Fe_dep_repress	PF01325.19	gi|345007105|ref|YP_004809957.1|	-	0.015	15.5	0.0	0.038	14.2	0.0	1.7	1	0	0	1	1	1	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_45	PF14947.6	gi|345007105|ref|YP_004809957.1|	-	0.024	14.6	0.0	0.053	13.5	0.0	1.6	1	0	0	1	1	1	0	Winged	helix-turn-helix
SpoIIID	PF12116.8	gi|345007105|ref|YP_004809957.1|	-	0.031	14.4	0.0	0.065	13.3	0.0	1.5	1	0	0	1	1	1	0	Stage	III	sporulation	protein	D
GAF	PF01590.26	gi|345007105|ref|YP_004809957.1|	-	0.055	14.1	0.0	0.074	13.7	0.0	1.6	1	1	0	1	1	1	0	GAF	domain
LexA_DNA_bind	PF01726.16	gi|345007105|ref|YP_004809957.1|	-	0.063	13.1	0.0	0.19	11.5	0.0	1.8	1	0	0	1	1	1	0	LexA	DNA	binding	domain
HTH_36	PF13730.6	gi|345007105|ref|YP_004809957.1|	-	0.12	12.3	0.0	0.3	11.1	0.0	1.7	1	0	0	1	1	1	0	Helix-turn-helix	domain
Haem_degrading	PF03928.14	gi|345007105|ref|YP_004809957.1|	-	0.17	12.0	0.3	0.67	10.0	0.3	2.0	1	1	0	1	1	1	0	Haem-degrading
B-block_TFIIIC	PF04182.12	gi|345007105|ref|YP_004809957.1|	-	0.18	12.0	0.0	0.28	11.4	0.0	1.3	1	0	0	1	1	1	0	B-block	binding	subunit	of	TFIIIC
zinc_ribbon_5	PF13719.6	gi|345007106|ref|YP_004809958.1|	-	0.028	14.2	0.2	0.061	13.1	0.2	1.5	1	0	0	1	1	1	0	zinc-ribbon	domain
zinc_ribbon_4	PF13717.6	gi|345007106|ref|YP_004809958.1|	-	0.11	12.4	0.1	0.25	11.3	0.1	1.6	1	0	0	1	1	1	0	zinc-ribbon	domain
Spc7	PF08317.11	gi|345007107|ref|YP_004809959.1|	-	7.9e-06	25.0	54.4	0.0099	14.8	11.9	4.1	2	2	1	3	3	3	3	Spc7	kinetochore	protein
TPR_MLP1_2	PF07926.12	gi|345007107|ref|YP_004809959.1|	-	0.00053	20.0	48.4	0.097	12.7	10.5	4.9	2	2	2	4	4	4	3	TPR/MLP1/MLP2-like	protein
Seryl_tRNA_N	PF02403.22	gi|345007107|ref|YP_004809959.1|	-	0.00097	19.3	41.0	0.18	12.1	2.1	5.6	2	2	2	5	5	5	3	Seryl-tRNA	synthetase	N-terminal	domain
SMC_N	PF02463.19	gi|345007107|ref|YP_004809959.1|	-	0.0022	17.5	0.4	0.015	14.7	0.3	2.0	2	0	0	2	2	2	1	RecF/RecN/SMC	N	terminal	domain
Baculo_PEP_C	PF04513.12	gi|345007107|ref|YP_004809959.1|	-	0.0031	17.6	20.3	1.6	8.7	1.4	5.0	2	2	2	4	4	4	2	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
WXG100	PF06013.12	gi|345007107|ref|YP_004809959.1|	-	0.0044	17.2	12.8	1.1	9.6	0.2	6.3	4	2	1	5	5	5	1	Proteins	of	100	residues	with	WXG
DHR10	PF18595.1	gi|345007107|ref|YP_004809959.1|	-	0.0056	16.7	6.0	0.0056	16.7	6.0	5.7	2	2	3	5	5	5	2	Designed	helical	repeat	protein	10	domain
CENP-F_leu_zip	PF10473.9	gi|345007107|ref|YP_004809959.1|	-	0.0087	16.1	62.8	0.45	10.5	12.4	5.0	2	2	3	5	5	5	2	Leucine-rich	repeats	of	kinetochore	protein	Cenp-F/LEK1
DUF4407	PF14362.6	gi|345007107|ref|YP_004809959.1|	-	0.011	15.2	40.0	0.085	12.2	12.8	3.6	1	1	2	3	3	3	0	Domain	of	unknown	function	(DUF4407)
DUF5082	PF16888.5	gi|345007107|ref|YP_004809959.1|	-	0.011	16.0	42.6	0.098	12.9	5.3	6.5	3	2	3	6	6	6	0	Domain	of	unknown	function	(DUF5082)
Vps51	PF08700.11	gi|345007107|ref|YP_004809959.1|	-	0.013	15.6	0.6	0.013	15.6	0.6	5.6	4	2	2	6	6	6	0	Vps51/Vps67
Fib_alpha	PF08702.10	gi|345007107|ref|YP_004809959.1|	-	0.013	15.7	4.9	0.013	15.7	4.9	4.4	3	1	0	4	4	4	0	Fibrinogen	alpha/beta	chain	family
ATG16	PF08614.11	gi|345007107|ref|YP_004809959.1|	-	0.026	14.8	73.1	0.031	14.5	19.0	4.7	1	1	2	4	4	4	0	Autophagy	protein	16	(ATG16)
Atg14	PF10186.9	gi|345007107|ref|YP_004809959.1|	-	0.043	12.9	43.4	0.44	9.6	16.7	4.1	1	1	2	3	3	3	0	Vacuolar	sorting	38	and	autophagy-related	subunit	14
DUF1870	PF08965.10	gi|345007107|ref|YP_004809959.1|	-	0.092	12.8	5.6	0.21	11.6	0.2	3.8	2	1	1	3	3	3	0	Domain	of	unknown	function	(DUF1870)
DASH_Dam1	PF08653.10	gi|345007107|ref|YP_004809959.1|	-	0.13	12.1	15.8	14	5.6	0.1	6.4	6	1	2	8	8	7	0	DASH	complex	subunit	Dam1
WEMBL	PF05701.11	gi|345007107|ref|YP_004809959.1|	-	0.16	10.6	49.4	0.038	12.7	19.6	2.7	2	1	0	2	2	2	0	Weak	chloroplast	movement	under	blue	light
DUF3450	PF11932.8	gi|345007107|ref|YP_004809959.1|	-	0.32	10.3	46.1	0.029	13.7	6.1	5.8	2	2	5	7	7	7	0	Protein	of	unknown	function	(DUF3450)
GAS	PF13851.6	gi|345007107|ref|YP_004809959.1|	-	0.56	9.5	46.3	0.57	9.5	16.4	4.4	2	2	2	4	4	4	0	Growth-arrest	specific	micro-tubule	binding
YabA	PF06156.13	gi|345007107|ref|YP_004809959.1|	-	0.61	10.8	39.8	0.35	11.5	5.2	5.9	2	2	4	6	6	6	0	Initiation	control	protein	YabA
FapA	PF03961.13	gi|345007107|ref|YP_004809959.1|	-	0.66	8.5	33.2	0.87	8.1	4.4	4.1	1	1	3	4	4	4	0	Flagellar	Assembly	Protein	A
DUF724	PF05266.14	gi|345007107|ref|YP_004809959.1|	-	1.1	9.0	36.3	2	8.2	9.1	4.3	2	2	2	4	4	4	0	Protein	of	unknown	function	(DUF724)
APG6_N	PF17675.1	gi|345007107|ref|YP_004809959.1|	-	1.3	9.6	77.6	0.77	10.3	24.0	6.5	1	1	5	6	6	6	0	Apg6	coiled-coil	region
DUF1664	PF07889.12	gi|345007107|ref|YP_004809959.1|	-	1.3	9.0	36.6	0.19	11.8	1.4	6.2	2	2	2	6	6	6	0	Protein	of	unknown	function	(DUF1664)
FlaC_arch	PF05377.11	gi|345007107|ref|YP_004809959.1|	-	1.4	9.3	41.3	0.61	10.5	0.3	8.7	4	2	4	9	9	9	0	Flagella	accessory	protein	C	(FlaC)
Fzo_mitofusin	PF04799.13	gi|345007107|ref|YP_004809959.1|	-	2	8.0	32.3	1.4	8.4	0.7	5.8	2	2	4	6	6	6	0	fzo-like	conserved	region
Rab5-bind	PF09311.11	gi|345007107|ref|YP_004809959.1|	-	2.2	7.6	52.0	0.33	10.3	10.1	4.0	1	1	2	3	3	3	0	Rabaptin-like	protein
FAM76	PF16046.5	gi|345007107|ref|YP_004809959.1|	-	2.2	7.6	26.9	0.02	14.2	5.0	3.1	2	1	1	3	3	3	0	FAM76	protein
DivIC	PF04977.15	gi|345007107|ref|YP_004809959.1|	-	2.3	8.0	60.4	0.38	10.5	1.6	8.6	2	2	5	8	8	8	0	Septum	formation	initiator
Fez1	PF06818.15	gi|345007107|ref|YP_004809959.1|	-	2.4	8.6	52.9	1.1	9.7	17.8	4.2	1	1	3	4	4	4	0	Fez1
FlxA	PF14282.6	gi|345007107|ref|YP_004809959.1|	-	2.5	8.1	23.3	2.5	8.2	0.1	5.5	3	1	2	5	5	5	0	FlxA-like	protein
TACC_C	PF05010.14	gi|345007107|ref|YP_004809959.1|	-	2.6	7.8	34.0	1.1	9.1	7.8	3.5	2	2	1	3	3	3	0	Transforming	acidic	coiled-coil-containing	protein	(TACC),	C-terminal
OmpH	PF03938.14	gi|345007107|ref|YP_004809959.1|	-	2.7	8.3	37.8	2	8.7	8.3	4.5	2	2	2	4	4	4	0	Outer	membrane	protein	(OmpH-like)
Laminin_II	PF06009.12	gi|345007107|ref|YP_004809959.1|	-	3.1	7.8	26.2	5.9	6.9	4.3	5.6	4	2	2	6	6	5	0	Laminin	Domain	II
NPV_P10	PF05531.12	gi|345007107|ref|YP_004809959.1|	-	3.6	8.1	25.9	24	5.5	2.0	7.0	3	2	4	7	7	7	0	Nucleopolyhedrovirus	P10	protein
Baculo_F	PF12259.8	gi|345007107|ref|YP_004809959.1|	-	4.7	5.6	18.0	0.27	9.7	7.0	2.3	2	1	0	2	2	2	0	Baculovirus	F	protein
TMF_TATA_bd	PF12325.8	gi|345007107|ref|YP_004809959.1|	-	4.9	7.4	62.5	10	6.4	8.5	6.3	2	2	4	6	6	6	0	TATA	element	modulatory	factor	1	TATA	binding
Lectin_N	PF03954.14	gi|345007107|ref|YP_004809959.1|	-	5.3	6.8	14.6	3.7	7.3	0.8	4.3	2	2	3	5	5	5	0	Hepatic	lectin,	N-terminal	domain
bZIP_1	PF00170.21	gi|345007107|ref|YP_004809959.1|	-	5.5	7.2	36.7	0.88	9.7	0.4	7.3	4	2	3	8	8	8	0	bZIP	transcription	factor
T3SSipB	PF16535.5	gi|345007107|ref|YP_004809959.1|	-	5.8	7.4	13.4	0.099	13.1	1.2	3.2	3	1	1	4	4	3	0	Type	III	cell	invasion	protein	SipB
KASH_CCD	PF14662.6	gi|345007107|ref|YP_004809959.1|	-	6.3	6.6	53.9	2	8.2	17.6	4.4	2	2	2	4	4	4	0	Coiled-coil	region	of	CCDC155	or	KASH
FTA4	PF13093.6	gi|345007107|ref|YP_004809959.1|	-	8.1	6.3	40.5	12	5.8	3.2	4.7	1	1	2	3	3	3	0	Kinetochore	complex	Fta4	of	Sim4	subunit,	or	CENP-50
COG2	PF06148.11	gi|345007107|ref|YP_004809959.1|	-	9.1	6.4	32.8	0.2	11.7	4.0	5.3	2	2	3	5	5	5	0	COG	(conserved	oligomeric	Golgi)	complex	component,	COG2
DDE_Tnp_IS240	PF13610.6	gi|345007108|ref|YP_004809960.1|	-	3.1e-17	63.1	0.0	4.2e-17	62.7	0.0	1.2	1	0	0	1	1	1	1	DDE	domain
DDE_Tnp_IS66	PF03050.14	gi|345007108|ref|YP_004809960.1|	-	0.00047	19.7	0.4	0.0013	18.3	0.1	1.7	1	1	0	1	1	1	1	Transposase	IS66	family
DDE_3	PF13358.6	gi|345007108|ref|YP_004809960.1|	-	0.0014	18.4	0.0	0.0025	17.6	0.0	1.5	1	1	0	1	1	1	1	DDE	superfamily	endonuclease
AbiEi_2	PF09952.9	gi|345007108|ref|YP_004809960.1|	-	0.0075	16.5	0.4	0.013	15.8	0.0	1.5	2	0	0	2	2	2	1	Transcriptional	regulator,	AbiEi	antitoxin,	Type	IV	TA	system
rve	PF00665.26	gi|345007108|ref|YP_004809960.1|	-	0.02	15.1	0.0	0.038	14.2	0.0	1.5	1	0	0	1	1	1	0	Integrase	core	domain
PG_binding_2	PF08823.11	gi|345007108|ref|YP_004809960.1|	-	0.15	12.4	1.6	0.98	9.8	0.0	2.6	3	0	0	3	3	3	0	Putative	peptidoglycan	binding	domain
Milton	PF12448.8	gi|345007108|ref|YP_004809960.1|	-	0.21	11.7	0.6	0.36	10.9	0.6	1.3	1	0	0	1	1	1	0	Kinesin	associated	protein
ZapB	PF06005.12	gi|345007110|ref|YP_004809962.1|	-	0.02	15.3	4.7	0.02	15.3	4.7	2.9	3	0	0	3	3	3	0	Cell	division	protein	ZapB
betaPIX_CC	PF16523.5	gi|345007110|ref|YP_004809962.1|	-	0.028	14.3	4.3	0.058	13.2	4.3	1.5	1	0	0	1	1	1	0	betaPIX	coiled	coil
ASD2	PF08687.11	gi|345007110|ref|YP_004809962.1|	-	3.2	7.2	12.2	0.11	12.0	5.1	1.9	2	0	0	2	2	2	0	Apx/Shroom	domain	ASD2
DUF87	PF01935.17	gi|345007111|ref|YP_004809963.1|	-	0.0018	18.5	0.0	0.015	15.4	0.0	2.2	2	0	0	2	2	2	1	Helicase	HerA,	central	domain
TrwB_AAD_bind	PF10412.9	gi|345007111|ref|YP_004809963.1|	-	0.0023	16.9	0.0	0.057	12.3	0.0	2.5	3	0	0	3	3	3	1	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
TraG-D_C	PF12696.7	gi|345007111|ref|YP_004809963.1|	-	0.011	15.8	0.0	0.027	14.5	0.0	1.7	1	0	0	1	1	1	0	TraM	recognition	site	of	TraD	and	TraG
AAA_10	PF12846.7	gi|345007111|ref|YP_004809963.1|	-	0.13	11.1	0.0	0.3	10.0	0.0	1.5	1	0	0	1	1	1	0	AAA-like	domain
HTH_20	PF12840.7	gi|345007113|ref|YP_004809965.1|	-	0.00023	21.1	0.0	0.00079	19.4	0.0	1.8	2	0	0	2	2	2	1	Helix-turn-helix	domain
Fe_dep_repress	PF01325.19	gi|345007113|ref|YP_004809965.1|	-	0.015	15.5	0.0	0.035	14.3	0.0	1.6	1	0	0	1	1	1	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_24	PF13412.6	gi|345007113|ref|YP_004809965.1|	-	0.015	14.8	0.0	0.064	12.8	0.0	2.0	2	0	0	2	2	2	0	Winged	helix-turn-helix	DNA-binding
TrmB	PF01978.19	gi|345007113|ref|YP_004809965.1|	-	0.038	13.9	0.0	0.084	12.8	0.0	1.5	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
NapD	PF03927.13	gi|345007113|ref|YP_004809965.1|	-	0.071	13.2	0.1	0.17	11.9	0.1	1.6	1	1	0	1	1	1	0	NapD	protein
Sigma70_r4_2	PF08281.12	gi|345007113|ref|YP_004809965.1|	-	0.081	12.6	0.0	0.2	11.4	0.0	1.7	1	0	0	1	1	1	0	Sigma-70,	region	4
HTH_5	PF01022.20	gi|345007113|ref|YP_004809965.1|	-	0.09	12.7	0.0	0.22	11.4	0.0	1.6	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
PemK_toxin	PF02452.17	gi|345007114|ref|YP_004809966.1|	-	0.018	15.4	0.0	0.02	15.3	0.0	1.1	1	0	0	1	1	1	0	PemK-like,	MazF-like	toxin	of	type	II	toxin-antitoxin	system
MarR_2	PF12802.7	gi|345007115|ref|YP_004809967.1|	-	1.3e-08	34.5	0.0	2e-08	34.0	0.0	1.3	1	0	0	1	1	1	1	MarR	family
TrmB	PF01978.19	gi|345007115|ref|YP_004809967.1|	-	7e-06	25.8	0.0	1.1e-05	25.2	0.0	1.3	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_Crp_2	PF13545.6	gi|345007115|ref|YP_004809967.1|	-	1.1e-05	25.3	0.0	1.5e-05	24.9	0.0	1.2	1	0	0	1	1	1	1	Crp-like	helix-turn-helix	domain
Rrf2	PF02082.20	gi|345007115|ref|YP_004809967.1|	-	2.3e-05	24.7	0.0	3.2e-05	24.2	0.0	1.1	1	0	0	1	1	1	1	Transcriptional	regulator
PaaX	PF07848.12	gi|345007115|ref|YP_004809967.1|	-	6.8e-05	23.0	0.0	0.00011	22.3	0.0	1.3	1	0	0	1	1	1	1	PaaX-like	protein
Fe_dep_repress	PF01325.19	gi|345007115|ref|YP_004809967.1|	-	7.1e-05	22.9	0.0	0.00014	21.9	0.0	1.5	1	0	0	1	1	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_IclR	PF09339.10	gi|345007115|ref|YP_004809967.1|	-	7.4e-05	22.5	0.0	0.00014	21.6	0.0	1.5	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
MarR	PF01047.22	gi|345007115|ref|YP_004809967.1|	-	0.00023	21.0	0.1	0.00061	19.7	0.0	1.6	2	0	0	2	2	2	1	MarR	family
DUF4423	PF14394.6	gi|345007115|ref|YP_004809967.1|	-	0.00029	20.6	0.0	0.00033	20.4	0.0	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4423)
HTH_5	PF01022.20	gi|345007115|ref|YP_004809967.1|	-	0.00038	20.3	0.0	0.00055	19.8	0.0	1.2	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
GntR	PF00392.21	gi|345007115|ref|YP_004809967.1|	-	0.00086	18.9	0.1	0.0014	18.2	0.1	1.3	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	gntR	family
HTH_24	PF13412.6	gi|345007115|ref|YP_004809967.1|	-	0.0021	17.6	0.1	0.0031	17.1	0.1	1.3	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_27	PF13463.6	gi|345007115|ref|YP_004809967.1|	-	0.0026	18.2	0.0	0.0039	17.6	0.0	1.3	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
HrcA_DNA-bdg	PF03444.15	gi|345007115|ref|YP_004809967.1|	-	0.0059	16.2	0.0	0.0093	15.6	0.0	1.2	1	0	0	1	1	1	1	Winged	helix-turn-helix	transcription	repressor,	HrcA	DNA-binding
HTH_11	PF08279.12	gi|345007115|ref|YP_004809967.1|	-	0.0094	15.9	0.0	0.016	15.1	0.0	1.4	1	0	0	1	1	1	1	HTH	domain
HemN_C	PF06969.16	gi|345007115|ref|YP_004809967.1|	-	0.012	15.7	0.0	0.057	13.5	0.0	2.1	2	1	0	2	2	2	0	HemN	C-terminal	domain
Sigma70_r4_2	PF08281.12	gi|345007115|ref|YP_004809967.1|	-	0.036	13.7	0.0	0.061	13.0	0.0	1.4	1	0	0	1	1	1	0	Sigma-70,	region	4
HTH_CodY	PF08222.11	gi|345007115|ref|YP_004809967.1|	-	0.037	13.6	0.0	0.059	12.9	0.0	1.3	1	0	0	1	1	1	0	CodY	helix-turn-helix	domain
RlmM_FDX	PF18125.1	gi|345007115|ref|YP_004809967.1|	-	0.048	14.1	0.0	0.081	13.4	0.0	1.4	1	0	0	1	1	1	0	RlmM	ferredoxin-like	domain
HTH_20	PF12840.7	gi|345007115|ref|YP_004809967.1|	-	0.055	13.5	0.0	0.081	13.0	0.0	1.3	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_10	PF04967.12	gi|345007115|ref|YP_004809967.1|	-	0.074	12.9	0.1	0.14	12.0	0.1	1.4	1	0	0	1	1	1	0	HTH	DNA	binding	domain
LexA_DNA_bind	PF01726.16	gi|345007115|ref|YP_004809967.1|	-	0.08	12.7	0.0	0.21	11.4	0.0	1.7	2	0	0	2	2	1	0	LexA	DNA	binding	domain
HTH_36	PF13730.6	gi|345007115|ref|YP_004809967.1|	-	0.089	12.8	0.0	0.25	11.3	0.0	1.8	2	1	0	2	2	2	0	Helix-turn-helix	domain
tRNA_anti-codon	PF01336.25	gi|345007116|ref|YP_004809968.1|	-	0.057	13.4	0.1	0.12	12.3	0.1	1.6	1	0	0	1	1	1	0	OB-fold	nucleic	acid	binding	domain
PIN	PF01850.21	gi|345007117|ref|YP_004809969.1|	-	6.1e-07	30.0	1.0	7.4e-07	29.7	1.0	1.1	1	0	0	1	1	1	1	PIN	domain
HTH_20	PF12840.7	gi|345007119|ref|YP_004809971.1|	-	0.00066	19.7	0.7	0.12	12.5	0.1	2.3	2	1	0	2	2	2	2	Helix-turn-helix	domain
HTH_AsnC-type	PF13404.6	gi|345007120|ref|YP_004809972.1|	-	2.4e-10	40.1	0.8	6.3e-10	38.7	0.8	1.8	1	0	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
HTH_24	PF13412.6	gi|345007120|ref|YP_004809972.1|	-	9.2e-10	37.9	2.0	9.4e-10	37.9	0.6	1.8	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
HTH_11	PF08279.12	gi|345007120|ref|YP_004809972.1|	-	8.5e-07	28.8	0.1	2.4e-06	27.4	0.1	1.8	2	0	0	2	2	2	1	HTH	domain
HTH_27	PF13463.6	gi|345007120|ref|YP_004809972.1|	-	3.7e-05	24.1	0.1	8.2e-05	23.0	0.1	1.6	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
HTH_20	PF12840.7	gi|345007120|ref|YP_004809972.1|	-	0.00048	20.1	0.0	0.0013	18.7	0.0	1.8	2	0	0	2	2	2	1	Helix-turn-helix	domain
MarR_2	PF12802.7	gi|345007120|ref|YP_004809972.1|	-	0.00082	19.2	0.0	0.0015	18.3	0.0	1.4	1	0	0	1	1	1	1	MarR	family
HTH_IclR	PF09339.10	gi|345007120|ref|YP_004809972.1|	-	0.015	15.0	0.2	0.047	13.5	0.0	1.8	2	0	0	2	2	2	0	IclR	helix-turn-helix	domain
HTH_23	PF13384.6	gi|345007120|ref|YP_004809972.1|	-	0.088	12.6	0.1	0.16	11.8	0.1	1.3	1	0	0	1	1	1	0	Homeodomain-like	domain
HTH_CodY	PF08222.11	gi|345007120|ref|YP_004809972.1|	-	0.13	11.9	0.1	0.34	10.5	0.0	1.7	2	0	0	2	2	2	0	CodY	helix-turn-helix	domain
HTH_DeoR	PF08220.12	gi|345007120|ref|YP_004809972.1|	-	0.25	11.1	1.6	0.33	10.7	0.5	1.7	2	0	0	2	2	2	0	DeoR-like	helix-turn-helix	domain
HTH_24	PF13412.6	gi|345007121|ref|YP_004809973.1|	-	5.3e-12	45.1	0.3	1e-11	44.2	0.1	1.6	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
HTH_AsnC-type	PF13404.6	gi|345007121|ref|YP_004809973.1|	-	9.2e-12	44.6	0.0	1.9e-11	43.6	0.0	1.6	1	0	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
HTH_11	PF08279.12	gi|345007121|ref|YP_004809973.1|	-	1.9e-06	27.7	0.1	4.1e-05	23.4	0.0	2.3	2	0	0	2	2	2	1	HTH	domain
HTH_20	PF12840.7	gi|345007121|ref|YP_004809973.1|	-	0.00016	21.7	0.0	0.00045	20.2	0.0	1.7	1	0	0	1	1	1	1	Helix-turn-helix	domain
MarR	PF01047.22	gi|345007121|ref|YP_004809973.1|	-	0.00066	19.5	0.0	0.0011	18.8	0.0	1.4	1	0	0	1	1	1	1	MarR	family
Fe_dep_repress	PF01325.19	gi|345007121|ref|YP_004809973.1|	-	0.0011	19.1	0.0	0.0028	17.8	0.0	1.6	1	0	0	1	1	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_28	PF13518.6	gi|345007121|ref|YP_004809973.1|	-	0.0027	17.8	0.0	0.0047	17.0	0.0	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_DeoR	PF08220.12	gi|345007121|ref|YP_004809973.1|	-	0.0036	17.0	0.0	0.0085	15.8	0.0	1.6	1	0	0	1	1	1	1	DeoR-like	helix-turn-helix	domain
MarR_2	PF12802.7	gi|345007121|ref|YP_004809973.1|	-	0.004	17.0	0.0	0.008	16.0	0.0	1.5	1	0	0	1	1	1	1	MarR	family
HTH_23	PF13384.6	gi|345007121|ref|YP_004809973.1|	-	0.0082	15.9	0.0	0.015	15.1	0.0	1.4	1	0	0	1	1	1	1	Homeodomain-like	domain
HTH_5	PF01022.20	gi|345007121|ref|YP_004809973.1|	-	0.014	15.2	0.0	0.026	14.4	0.0	1.5	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
TrmB	PF01978.19	gi|345007121|ref|YP_004809973.1|	-	0.02	14.8	0.1	0.051	13.5	0.0	1.6	2	0	0	2	2	2	0	Sugar-specific	transcriptional	regulator	TrmB
HTH_Crp_2	PF13545.6	gi|345007121|ref|YP_004809973.1|	-	0.023	14.7	0.1	0.12	12.3	0.0	2.0	2	0	0	2	2	2	0	Crp-like	helix-turn-helix	domain
HTH_10	PF04967.12	gi|345007121|ref|YP_004809973.1|	-	0.03	14.1	0.0	0.065	13.0	0.0	1.5	1	0	0	1	1	1	0	HTH	DNA	binding	domain
Fur_reg_FbpB	PF13040.6	gi|345007121|ref|YP_004809973.1|	-	0.04	13.5	0.9	0.091	12.3	0.9	1.6	1	0	0	1	1	1	0	Fur-regulated	basic	protein	B
P2	PF07194.11	gi|345007121|ref|YP_004809973.1|	-	0.056	13.5	0.5	1.2	9.3	0.0	2.6	1	1	2	3	3	3	0	P2	response	regulator	binding	domain
HTH_27	PF13463.6	gi|345007121|ref|YP_004809973.1|	-	0.067	13.7	0.0	0.19	12.2	0.0	1.7	2	0	0	2	2	2	0	Winged	helix	DNA-binding	domain
PLU-1	PF08429.11	gi|345007121|ref|YP_004809973.1|	-	0.072	12.3	0.2	0.1	11.8	0.2	1.1	1	0	0	1	1	1	0	PLU-1-like	protein
AsnC_trans_reg2	PF17805.1	gi|345007121|ref|YP_004809973.1|	-	0.084	13.0	0.0	0.21	11.8	0.0	1.7	2	0	0	2	2	2	0	AsnC-like	ligand	binding	domain
HTH_36	PF13730.6	gi|345007121|ref|YP_004809973.1|	-	0.086	12.8	0.0	0.23	11.4	0.0	1.8	2	0	0	2	2	2	0	Helix-turn-helix	domain
HTH_CodY	PF08222.11	gi|345007121|ref|YP_004809973.1|	-	0.12	12.0	0.1	0.21	11.2	0.1	1.3	1	0	0	1	1	1	0	CodY	helix-turn-helix	domain
HalOD1	PF18545.1	gi|345007122|ref|YP_004809974.1|	-	5.7e-26	90.6	0.4	6.6e-26	90.4	0.4	1.1	1	0	0	1	1	1	1	Halobacterial	output	domain	1
DDE_Tnp_1	PF01609.21	gi|345007123|ref|YP_004809975.1|	-	2.3e-15	56.8	4.5	1.1e-14	54.6	4.5	2.0	1	1	0	1	1	1	1	Transposase	DDE	domain
DDE_Tnp_1_2	PF13586.6	gi|345007123|ref|YP_004809975.1|	-	0.0098	16.3	0.8	0.021	15.2	0.4	1.8	2	0	0	2	2	2	1	Transposase	DDE	domain
HalOD1	PF18545.1	gi|345007124|ref|YP_004809976.1|	-	6.4e-14	52.0	0.2	7e-14	51.9	0.2	1.0	1	0	0	1	1	1	1	Halobacterial	output	domain	1
HATPase_c	PF02518.26	gi|345007125|ref|YP_004809977.1|	-	1.7e-13	51.0	0.1	5.7e-13	49.4	0.0	1.8	2	0	0	2	2	2	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HisKA	PF00512.25	gi|345007125|ref|YP_004809977.1|	-	2.1e-10	40.5	1.4	5.1e-10	39.3	1.4	1.7	1	0	0	1	1	1	1	His	Kinase	A	(phospho-acceptor)	domain
PAS_4	PF08448.10	gi|345007125|ref|YP_004809977.1|	-	7.4e-08	32.6	0.1	1.5e-07	31.6	0.1	1.6	1	0	0	1	1	1	1	PAS	fold
SPOB_a	PF14689.6	gi|345007125|ref|YP_004809977.1|	-	0.0018	18.0	0.5	0.0034	17.1	0.5	1.5	1	0	0	1	1	1	1	Sensor_kinase_SpoOB-type,	alpha-helical	domain
PAS_9	PF13426.7	gi|345007125|ref|YP_004809977.1|	-	0.0058	16.9	0.0	0.015	15.6	0.0	1.7	1	0	0	1	1	1	1	PAS	domain
DUF3562	PF12085.8	gi|345007125|ref|YP_004809977.1|	-	0.047	13.3	0.0	0.13	11.9	0.0	1.8	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3562)
DDE_Tnp_1	PF01609.21	gi|345007126|ref|YP_004809978.1|	-	0.032	13.9	0.1	0.089	12.4	0.1	1.7	1	1	0	1	1	1	0	Transposase	DDE	domain
Response_reg	PF00072.24	gi|345007127|ref|YP_004809979.1|	-	1.3e-23	83.3	0.0	1.6e-23	83.0	0.0	1.2	1	0	0	1	1	1	1	Response	regulator	receiver	domain
HTH_20	PF12840.7	gi|345007128|ref|YP_004809980.1|	-	1.2e-06	28.5	0.1	1.9e-06	27.8	0.1	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
MarR_2	PF12802.7	gi|345007128|ref|YP_004809980.1|	-	2.5e-06	27.3	0.1	4.5e-06	26.5	0.1	1.3	1	0	0	1	1	1	1	MarR	family
HTH_Crp_2	PF13545.6	gi|345007128|ref|YP_004809980.1|	-	4.8e-06	26.5	0.0	7e-06	25.9	0.0	1.3	1	0	0	1	1	1	1	Crp-like	helix-turn-helix	domain
TrmB	PF01978.19	gi|345007128|ref|YP_004809980.1|	-	9.2e-06	25.5	0.0	2.2e-05	24.3	0.0	1.6	1	1	1	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_24	PF13412.6	gi|345007128|ref|YP_004809980.1|	-	1.4e-05	24.6	0.0	2.4e-05	23.8	0.0	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_IclR	PF09339.10	gi|345007128|ref|YP_004809980.1|	-	6.6e-05	22.6	0.1	0.00014	21.6	0.1	1.5	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
HxlR	PF01638.17	gi|345007128|ref|YP_004809980.1|	-	9.1e-05	22.2	0.0	0.00012	21.8	0.0	1.2	1	0	0	1	1	1	1	HxlR-like	helix-turn-helix
HTH_34	PF13601.6	gi|345007128|ref|YP_004809980.1|	-	0.0025	18.0	0.0	0.0034	17.5	0.0	1.2	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
HTH_23	PF13384.6	gi|345007128|ref|YP_004809980.1|	-	0.0042	16.9	0.0	0.0076	16.0	0.0	1.5	1	0	0	1	1	1	1	Homeodomain-like	domain
Replic_Relax	PF13814.6	gi|345007128|ref|YP_004809980.1|	-	0.014	15.5	0.0	0.017	15.2	0.0	1.1	1	0	0	1	1	1	0	Replication-relaxation
GntR	PF00392.21	gi|345007128|ref|YP_004809980.1|	-	0.015	15.0	0.0	0.03	14.0	0.0	1.4	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	gntR	family
Rrf2	PF02082.20	gi|345007128|ref|YP_004809980.1|	-	0.018	15.4	0.0	0.032	14.6	0.0	1.4	1	0	0	1	1	1	0	Transcriptional	regulator
HTH_27	PF13463.6	gi|345007128|ref|YP_004809980.1|	-	0.02	15.3	0.1	0.046	14.2	0.0	1.6	2	0	0	2	2	1	0	Winged	helix	DNA-binding	domain
PadR	PF03551.14	gi|345007128|ref|YP_004809980.1|	-	0.036	14.0	0.0	0.059	13.3	0.0	1.3	1	0	0	1	1	1	0	Transcriptional	regulator	PadR-like	family
Crp	PF00325.20	gi|345007128|ref|YP_004809980.1|	-	0.04	13.6	0.0	0.073	12.7	0.0	1.5	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	crp	family
HTH_29	PF13551.6	gi|345007128|ref|YP_004809980.1|	-	0.04	13.9	0.0	0.088	12.8	0.0	1.5	1	1	0	1	1	1	0	Winged	helix-turn	helix
DUF4364	PF14277.6	gi|345007128|ref|YP_004809980.1|	-	0.046	13.5	0.0	0.072	12.8	0.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4364)
DUF1495	PF07381.11	gi|345007128|ref|YP_004809980.1|	-	0.048	13.5	0.2	0.84	9.5	0.2	2.2	1	1	0	1	1	1	0	Winged	helix	DNA-binding	domain	(DUF1495)
MarR	PF01047.22	gi|345007128|ref|YP_004809980.1|	-	0.073	13.0	0.0	0.12	12.3	0.0	1.3	1	0	0	1	1	1	0	MarR	family
TFIIE_alpha	PF02002.17	gi|345007128|ref|YP_004809980.1|	-	0.08	12.8	0.0	0.14	12.1	0.0	1.4	1	0	0	1	1	1	0	TFIIE	alpha	subunit
HTH_45	PF14947.6	gi|345007128|ref|YP_004809980.1|	-	0.081	12.9	0.0	0.11	12.5	0.0	1.2	1	0	0	1	1	1	0	Winged	helix-turn-helix
DUF2250	PF10007.9	gi|345007128|ref|YP_004809980.1|	-	0.14	12.3	0.1	11	6.2	0.0	2.2	1	1	1	2	2	2	0	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
Dcc1	PF09724.9	gi|345007128|ref|YP_004809980.1|	-	0.15	11.3	0.0	0.19	11.0	0.0	1.1	1	0	0	1	1	1	0	Sister	chromatid	cohesion	protein	Dcc1
DDE_Tnp_1	PF01609.21	gi|345007129|ref|YP_004809981.1|	-	0.032	13.9	0.1	0.089	12.4	0.1	1.7	1	1	0	1	1	1	0	Transposase	DDE	domain
ApoLp-III	PF07464.11	gi|345007130|ref|YP_004809982.1|	-	0.028	14.5	0.7	0.055	13.6	0.7	1.5	1	0	0	1	1	1	0	Apolipophorin-III	precursor	(apoLp-III)
RNA_pol_Rpb2_4	PF04566.13	gi|345007130|ref|YP_004809982.1|	-	0.091	13.1	0.1	0.23	11.8	0.0	1.7	2	0	0	2	2	2	0	RNA	polymerase	Rpb2,	domain	4
FUSC	PF04632.12	gi|345007130|ref|YP_004809982.1|	-	3.6	6.0	10.3	4.5	5.7	10.3	1.2	1	0	0	1	1	1	0	Fusaric	acid	resistance	protein	family
Syntaxin-6_N	PF09177.11	gi|345007130|ref|YP_004809982.1|	-	4.3	8.0	10.9	0.42	11.2	2.5	2.5	1	1	1	2	2	2	0	Syntaxin	6,	N-terminal
Spt4	PF06093.13	gi|345007131|ref|YP_004809983.1|	-	0.012	15.7	0.4	0.068	13.3	0.1	2.1	2	0	0	2	2	2	0	Spt4/RpoE2	zinc	finger
zinc_ribbon_2	PF13240.6	gi|345007131|ref|YP_004809983.1|	-	0.025	14.3	2.7	0.025	14.3	2.7	2.9	3	0	0	3	3	3	0	zinc-ribbon	domain
Zf_RING	PF16744.5	gi|345007131|ref|YP_004809983.1|	-	0.45	10.7	3.9	14	5.9	0.0	3.3	4	0	0	4	4	4	0	KIAA1045	RING	finger
zinc_ribbon_15	PF17032.5	gi|345007131|ref|YP_004809983.1|	-	0.85	10.4	7.3	6	7.7	0.5	2.7	2	1	0	3	3	3	0	zinc-ribbon	family
DZR	PF12773.7	gi|345007131|ref|YP_004809983.1|	-	1.1	9.4	9.0	2.3	8.3	1.5	2.6	2	1	0	2	2	2	0	Double	zinc	ribbon
RNA_POL_M_15KD	PF02150.16	gi|345007131|ref|YP_004809983.1|	-	4.2	7.3	9.8	12	5.9	0.2	3.6	3	1	0	3	3	3	0	RNA	polymerases	M/15	Kd	subunit
TrmB	PF01978.19	gi|345007134|ref|YP_004809986.1|	-	1.5e-09	37.6	0.3	7.1e-09	35.4	0.0	2.0	2	0	0	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_11	PF08279.12	gi|345007134|ref|YP_004809986.1|	-	6.7e-05	22.7	0.1	0.00019	21.3	0.0	1.8	2	0	0	2	2	2	1	HTH	domain
HTH_DeoR	PF08220.12	gi|345007134|ref|YP_004809986.1|	-	0.00026	20.7	0.0	0.00067	19.3	0.0	1.7	1	0	0	1	1	1	1	DeoR-like	helix-turn-helix	domain
MarR	PF01047.22	gi|345007134|ref|YP_004809986.1|	-	0.0014	18.6	0.0	0.004	17.1	0.0	1.8	2	0	0	2	2	2	1	MarR	family
HTH_IclR	PF09339.10	gi|345007134|ref|YP_004809986.1|	-	0.0045	16.8	0.1	0.013	15.3	0.0	1.8	2	0	0	2	2	2	1	IclR	helix-turn-helix	domain
HTH_20	PF12840.7	gi|345007134|ref|YP_004809986.1|	-	0.0056	16.7	0.6	0.012	15.6	0.1	1.8	2	0	0	2	2	2	1	Helix-turn-helix	domain
GntR	PF00392.21	gi|345007134|ref|YP_004809986.1|	-	0.0073	15.9	0.6	0.035	13.8	0.0	2.1	2	0	0	2	2	2	1	Bacterial	regulatory	proteins,	gntR	family
DUF2250	PF10007.9	gi|345007134|ref|YP_004809986.1|	-	0.0078	16.3	0.1	0.84	9.8	0.0	2.3	2	0	0	2	2	2	1	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
Penicillinase_R	PF03965.16	gi|345007134|ref|YP_004809986.1|	-	0.018	15.4	0.0	0.044	14.1	0.0	1.7	1	0	0	1	1	1	0	Penicillinase	repressor
ORC5_C	PF14630.6	gi|345007134|ref|YP_004809986.1|	-	0.028	13.9	0.0	0.039	13.5	0.0	1.3	1	0	0	1	1	1	0	Origin	recognition	complex	(ORC)	subunit	5	C-terminus
Mga	PF05043.13	gi|345007134|ref|YP_004809986.1|	-	0.064	13.9	0.0	0.17	12.5	0.0	1.7	1	0	0	1	1	1	0	Mga	helix-turn-helix	domain
Fe_dep_repress	PF01325.19	gi|345007134|ref|YP_004809986.1|	-	0.087	13.0	0.0	0.18	12.0	0.0	1.5	1	0	0	1	1	1	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
PIN_12	PF16289.5	gi|345007135|ref|YP_004809987.1|	-	0.026	15.0	0.1	2	8.9	0.1	2.1	2	0	0	2	2	2	0	PIN	domain
RPA_interact_C	PF14768.6	gi|345007136|ref|YP_004809988.1|	-	0.0044	17.5	0.5	0.0059	17.2	0.5	1.2	1	0	0	1	1	1	1	Replication	protein	A	interacting	C-terminal
zinc_ribbon_2	PF13240.6	gi|345007136|ref|YP_004809988.1|	-	0.012	15.3	1.0	3.8	7.3	0.1	2.4	2	0	0	2	2	2	0	zinc-ribbon	domain
Nudix_N_2	PF14803.6	gi|345007136|ref|YP_004809988.1|	-	0.013	15.4	2.8	2.1	8.4	0.1	2.7	3	0	0	3	3	3	0	Nudix	N-terminal
DUF2318	PF10080.9	gi|345007136|ref|YP_004809988.1|	-	0.018	15.2	0.1	0.022	14.8	0.1	1.2	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2318)
DZR	PF12773.7	gi|345007136|ref|YP_004809988.1|	-	0.019	15.0	0.6	0.029	14.4	0.6	1.3	1	0	0	1	1	1	0	Double	zinc	ribbon
GFA	PF04828.14	gi|345007136|ref|YP_004809988.1|	-	0.041	14.2	1.4	0.8	10.1	0.1	2.2	1	1	1	2	2	2	0	Glutathione-dependent	formaldehyde-activating	enzyme
DpnI	PF06044.12	gi|345007136|ref|YP_004809988.1|	-	0.096	12.3	0.4	0.13	11.9	0.4	1.2	1	0	0	1	1	1	0	Dam-replacing	family
Zn-ribbon_8	PF09723.10	gi|345007136|ref|YP_004809988.1|	-	0.2	11.8	1.2	18	5.6	0.4	2.4	2	0	0	2	2	2	0	Zinc	ribbon	domain
DNA_ligase_ZBD	PF03119.16	gi|345007136|ref|YP_004809988.1|	-	0.28	11.3	4.4	0.69	10.0	0.4	2.4	2	0	0	2	2	2	0	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
PG_binding_1	PF01471.18	gi|345007137|ref|YP_004809989.1|	-	0.057	13.6	0.0	0.1	12.8	0.0	1.4	1	0	0	1	1	1	0	Putative	peptidoglycan	binding	domain
PHM7_cyt	PF14703.6	gi|345007138|ref|YP_004809990.1|	-	0.13	12.5	0.1	0.15	12.3	0.1	1.0	1	0	0	1	1	1	0	Cytosolic	domain	of	10TM	putative	phosphate	transporter
TAT_signal	PF10518.9	gi|345007139|ref|YP_004809991.1|	-	0.016	15.0	1.9	0.028	14.3	1.9	1.4	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
DUF5057	PF16480.5	gi|345007139|ref|YP_004809991.1|	-	0.03	13.7	1.7	0.035	13.5	1.7	1.0	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF5057)
F-box	PF00646.33	gi|345007139|ref|YP_004809991.1|	-	0.043	13.7	0.0	0.077	12.9	0.0	1.4	1	0	0	1	1	1	0	F-box	domain
RNA_pol_Rpa2_4	PF06883.12	gi|345007139|ref|YP_004809991.1|	-	0.19	11.8	0.1	0.34	10.9	0.1	1.4	1	0	0	1	1	1	0	RNA	polymerase	I,	Rpa2	specific	domain
DDE_Tnp_1	PF01609.21	gi|345007141|ref|YP_004809993.1|	-	0.031	13.9	0.1	0.085	12.5	0.1	1.7	1	1	0	1	1	1	0	Transposase	DDE	domain
DDE_Tnp_1	PF01609.21	gi|345007142|ref|YP_004809994.1|	-	0.031	13.9	0.1	0.085	12.5	0.1	1.7	1	1	0	1	1	1	0	Transposase	DDE	domain
Methyltransf_21	PF05050.12	gi|345007143|ref|YP_004809995.1|	-	1.7e-19	70.5	0.1	2.5e-19	69.9	0.1	1.2	1	0	0	1	1	1	1	Methyltransferase	FkbM	domain
Met_10	PF02475.16	gi|345007143|ref|YP_004809995.1|	-	9e-07	28.8	0.0	1.6e-06	28.0	0.0	1.4	1	0	0	1	1	1	1	Met-10+	like-protein
V_cholerae_RfbT	PF05575.11	gi|345007143|ref|YP_004809995.1|	-	2.4e-05	23.7	0.1	3.9e-05	23.1	0.1	1.3	1	1	0	1	1	1	1	Vibrio	cholerae	RfbT	protein
Methyltransf_18	PF12847.7	gi|345007143|ref|YP_004809995.1|	-	0.017	15.1	0.0	0.029	14.3	0.0	1.3	1	0	0	1	1	1	0	Methyltransferase	domain
Glyco_transf_4	PF13439.6	gi|345007144|ref|YP_004809996.1|	-	3.1e-11	43.6	0.0	3.9e-11	43.2	0.0	1.1	1	0	0	1	1	1	1	Glycosyltransferase	Family	4
Glyco_trans_4_4	PF13579.6	gi|345007144|ref|YP_004809996.1|	-	6.4e-11	42.9	0.0	1e-10	42.3	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	transferase	4-like	domain
Glycos_transf_1	PF00534.20	gi|345007144|ref|YP_004809996.1|	-	1e-05	25.1	0.0	1.5e-05	24.6	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.6	gi|345007144|ref|YP_004809996.1|	-	2.6e-05	24.7	0.0	5.1e-05	23.7	0.0	1.5	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
DUF2110	PF09883.9	gi|345007144|ref|YP_004809996.1|	-	0.21	11.1	0.0	0.27	10.8	0.0	1.1	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	archaea	(DUF2110)
DDE_Tnp_1	PF01609.21	gi|345007145|ref|YP_004809997.1|	-	0.031	13.9	0.1	0.085	12.5	0.1	1.7	1	1	0	1	1	1	0	Transposase	DDE	domain
PI3K_P85_iSH2	PF16454.5	gi|345007146|ref|YP_004809998.1|	-	0.00064	19.3	0.0	0.00087	18.9	0.0	1.2	1	0	0	1	1	1	1	Phosphatidylinositol	3-kinase	regulatory	subunit	P85	inter-SH2	domain
Ribosomal_S5_C	PF03719.15	gi|345007146|ref|YP_004809998.1|	-	0.15	11.5	0.0	0.22	11.0	0.0	1.1	1	0	0	1	1	1	0	Ribosomal	protein	S5,	C-terminal	domain
HTH_27	PF13463.6	gi|345007147|ref|YP_004809999.1|	-	0.0072	16.8	0.1	0.0087	16.5	0.1	1.1	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
HTH_24	PF13412.6	gi|345007147|ref|YP_004809999.1|	-	0.016	14.8	0.5	0.018	14.6	0.5	1.2	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
B-block_TFIIIC	PF04182.12	gi|345007147|ref|YP_004809999.1|	-	0.036	14.2	0.1	0.04	14.1	0.1	1.1	1	0	0	1	1	1	0	B-block	binding	subunit	of	TFIIIC
HTH_45	PF14947.6	gi|345007147|ref|YP_004809999.1|	-	0.045	13.7	0.2	0.049	13.6	0.2	1.1	1	0	0	1	1	1	0	Winged	helix-turn-helix
MarR_2	PF12802.7	gi|345007147|ref|YP_004809999.1|	-	0.059	13.3	0.0	0.065	13.1	0.0	1.1	1	0	0	1	1	1	0	MarR	family
GntR	PF00392.21	gi|345007148|ref|YP_004810000.1|	-	0.0017	18.0	0.0	0.0032	17.1	0.0	1.4	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	gntR	family
HTH_5	PF01022.20	gi|345007148|ref|YP_004810000.1|	-	0.0022	17.8	0.0	0.0037	17.1	0.0	1.3	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
MarR_2	PF12802.7	gi|345007148|ref|YP_004810000.1|	-	0.0064	16.4	0.3	0.012	15.5	0.3	1.4	1	0	0	1	1	1	1	MarR	family
HTH_20	PF12840.7	gi|345007148|ref|YP_004810000.1|	-	0.019	15.0	0.3	0.06	13.4	0.3	1.8	1	0	0	1	1	1	0	Helix-turn-helix	domain
TrmB	PF01978.19	gi|345007148|ref|YP_004810000.1|	-	0.12	12.3	0.0	0.23	11.4	0.0	1.4	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
UBA_4	PF14555.6	gi|345007149|ref|YP_004810001.1|	-	0.064	13.1	0.1	1.9	8.3	0.0	2.4	2	0	0	2	2	2	0	UBA-like	domain
DUF4177	PF13783.6	gi|345007150|ref|YP_004810002.1|	-	2.2e-11	43.9	0.0	2.5e-11	43.7	0.0	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4177)
DUF456	PF04306.13	gi|345007151|ref|YP_004810003.1|	-	0.0056	17.0	3.3	0.0071	16.6	3.3	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF456)
Tad	PF13400.6	gi|345007151|ref|YP_004810003.1|	-	0.07	13.4	0.7	0.07	13.4	0.7	1.8	2	0	0	2	2	2	0	Putative	Flp	pilus-assembly	TadE/G-like
DUF3974	PF13120.6	gi|345007151|ref|YP_004810003.1|	-	1.7	8.8	3.8	1.3	9.2	3.0	1.3	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF3974)
S1FA	PF04689.13	gi|345007151|ref|YP_004810003.1|	-	9.4	6.5	7.7	8.9	6.5	0.9	2.0	1	1	1	2	2	2	0	DNA	binding	protein	S1FA
DDE_Tnp_1	PF01609.21	gi|345007152|ref|YP_004810004.1|	-	6.9e-33	114.1	0.3	9e-33	113.7	0.3	1.2	1	0	0	1	1	1	1	Transposase	DDE	domain
DDE_Tnp_1_4	PF13701.6	gi|345007152|ref|YP_004810004.1|	-	0.0083	14.4	0.1	0.028	12.7	0.0	1.7	1	1	1	2	2	2	1	Transposase	DDE	domain	group	1
Corona_3	PF04694.12	gi|345007152|ref|YP_004810004.1|	-	0.043	14.2	0.0	0.11	12.9	0.0	1.6	1	0	0	1	1	1	0	Coronavirus	ORF3	protein
Piwi	PF02171.17	gi|345007156|ref|YP_004810008.1|	-	0.0015	17.9	0.0	0.0033	16.7	0.0	1.5	2	0	0	2	2	2	1	Piwi	domain
DDE_Tnp_1	PF01609.21	gi|345007158|ref|YP_004810010.1|	-	0.027	14.1	0.1	0.14	11.8	0.0	2.1	1	1	0	1	1	1	0	Transposase	DDE	domain
Helicase_C	PF00271.31	gi|345007159|ref|YP_004810011.1|	-	1.3e-15	57.7	0.0	3.4e-15	56.4	0.0	1.8	1	0	0	1	1	1	1	Helicase	conserved	C-terminal	domain
SNF2_N	PF00176.23	gi|345007159|ref|YP_004810011.1|	-	2.9e-12	46.0	0.0	1.3e-11	43.8	0.0	1.9	2	0	0	2	2	2	1	SNF2	family	N-terminal	domain
PLDc_2	PF13091.6	gi|345007159|ref|YP_004810011.1|	-	5.7e-09	36.0	0.0	1.3e-08	34.8	0.0	1.7	1	0	0	1	1	1	1	PLD-like	domain
ResIII	PF04851.15	gi|345007159|ref|YP_004810011.1|	-	0.00055	20.0	0.0	0.0023	18.0	0.0	2.1	1	1	0	1	1	1	1	Type	III	restriction	enzyme,	res	subunit
ABC_tran_CTD	PF16326.5	gi|345007159|ref|YP_004810011.1|	-	3	8.2	7.0	0.71	10.2	0.3	3.4	3	0	0	3	3	3	0	ABC	transporter	C-terminal	domain
DUF1156	PF06634.12	gi|345007160|ref|YP_004810012.1|	-	1.2e-06	28.6	0.2	2.9e-06	27.3	0.2	1.7	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1156)
N6_N4_Mtase	PF01555.18	gi|345007160|ref|YP_004810012.1|	-	1.4e-05	25.0	0.0	3.2e-05	23.8	0.0	1.6	1	0	0	1	1	1	1	DNA	methylase
Methyltransf_11	PF08241.12	gi|345007160|ref|YP_004810012.1|	-	0.089	13.5	0.1	1.2	9.8	0.0	2.5	2	0	0	2	2	2	0	Methyltransferase	domain
DDE_Tnp_1	PF01609.21	gi|345007162|ref|YP_004810014.1|	-	0.031	13.9	0.1	0.085	12.5	0.1	1.7	1	1	0	1	1	1	0	Transposase	DDE	domain
Pyrid_ox_like	PF16242.5	gi|345007166|ref|YP_004810018.1|	-	0.076	12.6	0.1	0.12	12.0	0.1	1.3	1	0	0	1	1	1	0	Pyridoxamine	5'-phosphate	oxidase	like
Speriolin_C	PF15059.6	gi|345007166|ref|YP_004810018.1|	-	0.1	12.7	0.0	0.13	12.4	0.0	1.1	1	0	0	1	1	1	0	Speriolin	C-terminus
AAA_22	PF13401.6	gi|345007167|ref|YP_004810019.1|	-	1.3e-09	38.5	0.1	1.2e-08	35.3	0.0	2.1	2	0	0	2	2	2	1	AAA	domain
AAA_16	PF13191.6	gi|345007167|ref|YP_004810019.1|	-	2e-09	38.0	2.6	1.7e-08	35.0	0.1	2.9	1	1	1	2	2	2	1	AAA	ATPase	domain
AAA_assoc_2	PF16193.5	gi|345007167|ref|YP_004810019.1|	-	4.6e-07	30.1	3.9	0.00067	19.9	1.2	2.6	2	0	0	2	2	2	2	AAA	C-terminal	domain
AAA_18	PF13238.6	gi|345007167|ref|YP_004810019.1|	-	1.2e-05	25.9	0.1	9.7e-05	22.9	0.0	2.3	1	1	2	3	3	3	1	AAA	domain
Penicillinase_R	PF03965.16	gi|345007167|ref|YP_004810019.1|	-	1.9e-05	25.0	0.0	4.5e-05	23.8	0.0	1.6	1	0	0	1	1	1	1	Penicillinase	repressor
AAA_5	PF07728.14	gi|345007167|ref|YP_004810019.1|	-	0.00012	22.0	0.0	0.00052	20.0	0.0	2.1	1	1	0	1	1	1	1	AAA	domain	(dynein-related	subfamily)
NTPase_1	PF03266.15	gi|345007167|ref|YP_004810019.1|	-	0.00036	20.5	0.4	0.011	15.7	0.0	2.8	2	1	1	3	3	3	1	NTPase
AAA	PF00004.29	gi|345007167|ref|YP_004810019.1|	-	0.0006	20.2	0.0	0.0087	16.5	0.0	2.8	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_33	PF13671.6	gi|345007167|ref|YP_004810019.1|	-	0.0022	18.2	0.7	0.46	10.7	0.0	3.1	2	2	1	3	3	3	1	AAA	domain
NB-ARC	PF00931.22	gi|345007167|ref|YP_004810019.1|	-	0.0045	16.2	0.0	0.01	15.0	0.0	1.7	2	0	0	2	2	2	1	NB-ARC	domain
AAA_14	PF13173.6	gi|345007167|ref|YP_004810019.1|	-	0.0066	16.5	0.0	0.016	15.3	0.0	1.7	1	1	0	1	1	1	1	AAA	domain
ATPase_2	PF01637.18	gi|345007167|ref|YP_004810019.1|	-	0.0068	16.4	0.0	0.06	13.3	0.0	2.2	1	1	0	1	1	1	1	ATPase	domain	predominantly	from	Archaea
Cdc6_C	PF09079.11	gi|345007167|ref|YP_004810019.1|	-	0.0082	16.1	0.4	0.044	13.7	0.3	2.3	2	1	1	3	3	2	1	CDC6,	C	terminal	winged	helix	domain
DUF2075	PF09848.9	gi|345007167|ref|YP_004810019.1|	-	0.01	15.1	0.0	0.015	14.6	0.0	1.3	1	0	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2075)
NACHT	PF05729.12	gi|345007167|ref|YP_004810019.1|	-	0.015	15.2	0.1	0.034	14.1	0.0	1.6	2	0	0	2	2	1	0	NACHT	domain
PRK	PF00485.18	gi|345007167|ref|YP_004810019.1|	-	0.017	14.8	0.0	0.034	13.9	0.0	1.5	1	0	0	1	1	1	0	Phosphoribulokinase	/	Uridine	kinase	family
DUF4194	PF13835.6	gi|345007167|ref|YP_004810019.1|	-	0.02	14.7	0.0	0.05	13.3	0.0	1.7	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4194)
AAA_30	PF13604.6	gi|345007167|ref|YP_004810019.1|	-	0.039	13.7	0.5	0.16	11.7	0.0	2.2	2	1	0	2	2	2	0	AAA	domain
RNA_helicase	PF00910.22	gi|345007167|ref|YP_004810019.1|	-	0.05	14.0	0.0	0.13	12.7	0.0	1.8	1	1	0	1	1	1	0	RNA	helicase
IstB_IS21	PF01695.17	gi|345007167|ref|YP_004810019.1|	-	0.062	13.0	0.3	2.5	7.8	0.3	2.6	1	1	0	1	1	1	0	IstB-like	ATP	binding	protein
RsgA_GTPase	PF03193.16	gi|345007167|ref|YP_004810019.1|	-	0.067	13.1	0.0	0.13	12.1	0.0	1.5	1	0	0	1	1	1	0	RsgA	GTPase
RuvB_N	PF05496.12	gi|345007167|ref|YP_004810019.1|	-	0.086	12.6	0.0	0.21	11.3	0.0	1.8	1	1	0	1	1	1	0	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
ABC_tran	PF00005.27	gi|345007167|ref|YP_004810019.1|	-	0.15	12.6	0.0	1	9.9	0.0	2.4	1	1	1	2	2	2	0	ABC	transporter
SRAP	PF02586.14	gi|345007169|ref|YP_004810021.1|	-	3e-61	206.7	0.0	3.4e-61	206.6	0.0	1.0	1	0	0	1	1	1	1	SOS	response	associated	peptidase	(SRAP)
DDE_Tnp_1	PF01609.21	gi|345007170|ref|YP_004810022.1|	-	1.7e-15	57.3	5.6	6.8e-15	55.3	5.6	1.9	1	1	0	1	1	1	1	Transposase	DDE	domain
DUF772	PF05598.11	gi|345007170|ref|YP_004810022.1|	-	0.00046	20.2	0.6	0.0012	18.8	0.0	2.0	2	0	0	2	2	2	1	Transposase	domain	(DUF772)
DDE_Tnp_1_2	PF13586.6	gi|345007170|ref|YP_004810022.1|	-	0.0071	16.7	1.2	0.013	15.8	0.2	1.9	2	1	0	2	2	2	1	Transposase	DDE	domain
DDE_Tnp_1_6	PF13751.6	gi|345007170|ref|YP_004810022.1|	-	0.021	15.1	0.5	0.06	13.6	0.3	1.9	2	0	0	2	2	2	0	Transposase	DDE	domain
ArsP_1	PF03773.13	gi|345007171|ref|YP_004810023.1|	-	7.7e-57	192.7	15.3	1e-56	192.3	15.3	1.2	1	0	0	1	1	1	1	Predicted	permease
YHS	PF04945.13	gi|345007171|ref|YP_004810023.1|	-	3.1e-17	62.4	4.1	1.5e-11	44.2	0.4	2.4	2	0	0	2	2	2	2	YHS	domain
zf-FCS	PF06467.14	gi|345007171|ref|YP_004810023.1|	-	2.6e-05	24.1	0.3	0.083	12.8	0.0	2.4	2	0	0	2	2	2	2	MYM-type	Zinc	finger	with	FCS	sequence	motif
RPAP2_Rtr1	PF04181.13	gi|345007171|ref|YP_004810023.1|	-	0.031	14.6	0.2	5.5	7.4	0.0	2.3	2	0	0	2	2	2	0	Rtr1/RPAP2	family
zf-HIT	PF04438.16	gi|345007171|ref|YP_004810023.1|	-	0.06	13.2	0.3	0.23	11.4	0.0	2.0	2	0	0	2	2	2	0	HIT	zinc	finger
DUF2256	PF10013.9	gi|345007171|ref|YP_004810023.1|	-	1.1	9.4	3.1	16	5.7	0.2	2.7	3	0	0	3	3	3	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2256)
SHOCT	PF09851.9	gi|345007172|ref|YP_004810024.1|	-	1.2e-07	31.3	2.6	1.6e-07	30.8	2.6	1.2	1	0	0	1	1	1	1	Short	C-terminal	domain
DUF1707	PF08044.11	gi|345007172|ref|YP_004810024.1|	-	0.00012	22.1	1.8	0.00018	21.5	1.8	1.3	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1707)
Yip1	PF04893.17	gi|345007172|ref|YP_004810024.1|	-	0.0056	16.4	6.1	0.0065	16.2	6.1	1.1	1	0	0	1	1	1	1	Yip1	domain
DUF4381	PF14316.6	gi|345007172|ref|YP_004810024.1|	-	0.24	11.6	2.6	0.82	9.9	0.0	2.0	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4381)
Halogen_Hydrol	PF10112.9	gi|345007172|ref|YP_004810024.1|	-	0.58	10.1	2.1	2.4	8.1	2.1	1.8	1	1	0	1	1	1	0	5-bromo-4-chloroindolyl	phosphate	hydrolysis	protein
DUF2207	PF09972.9	gi|345007172|ref|YP_004810024.1|	-	0.96	8.1	2.8	1.2	7.8	2.8	1.1	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2207)
DDE_Tnp_1	PF01609.21	gi|345007173|ref|YP_004810025.1|	-	0.027	14.1	0.1	0.14	11.8	0.0	2.1	1	1	0	1	1	1	0	Transposase	DDE	domain
DDE_Tnp_1	PF01609.21	gi|345007174|ref|YP_004810026.1|	-	2.6e-11	43.6	0.5	4.6e-11	42.8	0.5	1.3	1	0	0	1	1	1	1	Transposase	DDE	domain
DUF772	PF05598.11	gi|345007174|ref|YP_004810026.1|	-	0.00048	20.1	0.1	0.0011	18.9	0.1	1.6	1	0	0	1	1	1	1	Transposase	domain	(DUF772)
DDE_Tnp_1_3	PF13612.6	gi|345007174|ref|YP_004810026.1|	-	0.07	13.1	0.1	0.11	12.5	0.1	1.3	1	0	0	1	1	1	0	Transposase	DDE	domain
CorA	PF01544.18	gi|345007177|ref|YP_004810029.1|	-	0.041	13.2	1.8	0.045	13.1	1.8	1.0	1	0	0	1	1	1	0	CorA-like	Mg2+	transporter	protein
MutL_C	PF08676.11	gi|345007177|ref|YP_004810029.1|	-	0.053	13.3	0.2	0.07	12.9	0.2	1.1	1	0	0	1	1	1	0	MutL	C	terminal	dimerisation	domain
PSK_trans_fac	PF07704.11	gi|345007177|ref|YP_004810029.1|	-	1.3	9.8	9.8	0.26	12.1	1.3	2.1	1	1	1	2	2	2	0	Rv0623-like	transcription	factor
PKcGMP_CC	PF16808.5	gi|345007177|ref|YP_004810029.1|	-	1.5	8.7	7.6	1.5	8.7	1.7	2.2	2	0	0	2	2	2	0	Coiled-coil	N-terminus	of	cGMP-dependent	protein	kinase
DNA_pol_B	PF00136.21	gi|345007178|ref|YP_004810030.1|	-	3.5e-25	88.6	0.0	8.4e-25	87.4	0.0	1.5	1	1	0	1	1	1	1	DNA	polymerase	family	B
DUF465	PF04325.13	gi|345007178|ref|YP_004810030.1|	-	0.83	9.7	4.3	13	5.9	1.7	2.5	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF465)
Cdc6_C	PF09079.11	gi|345007179|ref|YP_004810031.1|	-	1e-13	51.1	0.0	2.3e-13	49.9	0.0	1.6	1	0	0	1	1	1	1	CDC6,	C	terminal	winged	helix	domain
AAA_22	PF13401.6	gi|345007179|ref|YP_004810031.1|	-	3.2e-11	43.7	0.0	1.4e-10	41.6	0.0	1.9	2	0	0	2	2	2	1	AAA	domain
AAA_16	PF13191.6	gi|345007179|ref|YP_004810031.1|	-	1.9e-07	31.6	0.0	5.2e-07	30.2	0.0	1.8	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA	PF00004.29	gi|345007179|ref|YP_004810031.1|	-	1.5e-05	25.4	0.0	5.4e-05	23.6	0.0	2.0	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
DUF815	PF05673.13	gi|345007179|ref|YP_004810031.1|	-	0.0041	16.3	0.0	0.0063	15.7	0.0	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF815)
AAA_5	PF07728.14	gi|345007179|ref|YP_004810031.1|	-	0.006	16.6	0.0	0.42	10.6	0.0	2.5	2	0	0	2	2	2	1	AAA	domain	(dynein-related	subfamily)
Sigma54_activat	PF00158.26	gi|345007179|ref|YP_004810031.1|	-	0.0062	16.3	0.0	0.012	15.3	0.0	1.5	1	0	0	1	1	1	1	Sigma-54	interaction	domain
ResIII	PF04851.15	gi|345007179|ref|YP_004810031.1|	-	0.052	13.6	0.0	0.17	11.9	0.0	1.7	2	0	0	2	2	2	0	Type	III	restriction	enzyme,	res	subunit
RuvB_N	PF05496.12	gi|345007179|ref|YP_004810031.1|	-	0.066	12.9	0.0	0.55	10.0	0.0	2.1	2	0	0	2	2	2	0	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
TniB	PF05621.11	gi|345007179|ref|YP_004810031.1|	-	0.067	12.6	0.0	0.18	11.2	0.0	1.7	1	1	0	1	1	1	0	Bacterial	TniB	protein
AAA_7	PF12775.7	gi|345007179|ref|YP_004810031.1|	-	0.088	12.3	0.0	0.16	11.5	0.0	1.4	1	0	0	1	1	1	0	P-loop	containing	dynein	motor	region
RNA_helicase	PF00910.22	gi|345007179|ref|YP_004810031.1|	-	0.11	12.9	0.0	0.4	11.1	0.0	2.1	1	0	0	1	1	1	0	RNA	helicase
TsaE	PF02367.17	gi|345007179|ref|YP_004810031.1|	-	0.12	12.4	0.0	0.24	11.4	0.0	1.4	1	0	0	1	1	1	0	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
NACHT	PF05729.12	gi|345007179|ref|YP_004810031.1|	-	0.14	12.0	0.0	0.25	11.2	0.0	1.4	1	0	0	1	1	1	0	NACHT	domain
alpha-hel2	PF14456.6	gi|345007181|ref|YP_004810033.1|	-	0.056	12.7	1.0	0.068	12.5	1.0	1.1	1	0	0	1	1	1	0	Alpha-helical	domain	2
CSTF2_hinge	PF14327.6	gi|345007181|ref|YP_004810033.1|	-	0.13	12.7	0.0	0.21	12.1	0.0	1.2	1	0	0	1	1	1	0	Hinge	domain	of	cleavage	stimulation	factor	subunit	2
DUF2274	PF10038.9	gi|345007181|ref|YP_004810033.1|	-	0.15	12.5	1.5	3.6	8.1	0.2	2.2	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2274)
MarR_2	PF12802.7	gi|345007182|ref|YP_004810034.1|	-	8.5e-15	54.4	1.8	6e-08	32.5	0.8	2.7	2	0	0	2	2	2	2	MarR	family
TrmB	PF01978.19	gi|345007182|ref|YP_004810034.1|	-	2.1e-09	37.1	0.3	0.00034	20.4	0.0	2.7	2	0	0	2	2	2	2	Sugar-specific	transcriptional	regulator	TrmB
HTH_24	PF13412.6	gi|345007182|ref|YP_004810034.1|	-	4.7e-09	35.7	0.1	0.0025	17.3	0.0	2.5	2	0	0	2	2	2	2	Winged	helix-turn-helix	DNA-binding
Rrf2	PF02082.20	gi|345007182|ref|YP_004810034.1|	-	1.3e-07	31.8	0.0	0.021	15.1	0.0	2.6	2	0	0	2	2	2	2	Transcriptional	regulator
MarR	PF01047.22	gi|345007182|ref|YP_004810034.1|	-	1.9e-07	30.9	0.0	0.009	15.9	0.1	2.5	2	0	0	2	2	2	2	MarR	family
HTH_23	PF13384.6	gi|345007182|ref|YP_004810034.1|	-	1.2e-06	28.2	1.2	0.013	15.2	0.0	3.2	3	0	0	3	3	3	2	Homeodomain-like	domain
HTH_Crp_2	PF13545.6	gi|345007182|ref|YP_004810034.1|	-	1.3e-06	28.3	0.0	0.00094	19.1	0.0	2.5	2	0	0	2	2	2	2	Crp-like	helix-turn-helix	domain
HTH_IclR	PF09339.10	gi|345007182|ref|YP_004810034.1|	-	1.5e-06	27.9	0.2	0.079	12.8	0.0	2.9	3	0	0	3	3	2	2	IclR	helix-turn-helix	domain
HTH_27	PF13463.6	gi|345007182|ref|YP_004810034.1|	-	1.9e-06	28.3	1.0	1.3e-05	25.6	0.4	2.3	2	0	0	2	2	2	1	Winged	helix	DNA-binding	domain
HTH_20	PF12840.7	gi|345007182|ref|YP_004810034.1|	-	2.2e-06	27.6	0.3	0.06	13.4	0.0	2.7	2	0	0	2	2	2	2	Helix-turn-helix	domain
HTH_29	PF13551.6	gi|345007182|ref|YP_004810034.1|	-	5.7e-06	26.2	0.3	0.057	13.5	0.0	2.7	2	0	0	2	2	2	2	Winged	helix-turn	helix
HTH_28	PF13518.6	gi|345007182|ref|YP_004810034.1|	-	4.7e-05	23.4	1.3	0.031	14.4	0.0	3.1	3	0	0	3	3	3	1	Helix-turn-helix	domain
HTH_5	PF01022.20	gi|345007182|ref|YP_004810034.1|	-	0.00064	19.5	0.0	1.5	8.7	0.0	2.5	2	0	0	2	2	2	2	Bacterial	regulatory	protein,	arsR	family
GntR	PF00392.21	gi|345007182|ref|YP_004810034.1|	-	0.0013	18.4	0.0	2.5	7.8	0.0	2.6	2	0	0	2	2	2	2	Bacterial	regulatory	proteins,	gntR	family
DUF746	PF05344.11	gi|345007182|ref|YP_004810034.1|	-	0.0017	18.1	0.0	0.0048	16.7	0.0	1.8	2	0	0	2	2	1	1	Domain	of	Unknown	Function	(DUF746)
Penicillinase_R	PF03965.16	gi|345007182|ref|YP_004810034.1|	-	0.002	18.5	0.0	2.1	8.7	0.0	2.5	1	1	1	2	2	2	2	Penicillinase	repressor
HTH_38	PF13936.6	gi|345007182|ref|YP_004810034.1|	-	0.0033	17.2	2.4	2.9	7.7	0.0	3.3	3	0	0	3	3	3	1	Helix-turn-helix	domain
Crp	PF00325.20	gi|345007182|ref|YP_004810034.1|	-	0.0051	16.4	0.4	0.025	14.2	0.3	2.1	2	0	0	2	2	2	1	Bacterial	regulatory	proteins,	crp	family
LZ_Tnp_IS481	PF13011.6	gi|345007182|ref|YP_004810034.1|	-	0.028	15.0	0.0	0.068	13.7	0.0	1.7	1	0	0	1	1	1	0	leucine-zipper	of	insertion	element	IS481
HTH_41	PF14502.6	gi|345007182|ref|YP_004810034.1|	-	0.035	13.8	0.0	0.15	11.8	0.0	2.0	2	0	0	2	2	2	0	Helix-turn-helix	domain
HTH_11	PF08279.12	gi|345007182|ref|YP_004810034.1|	-	0.051	13.5	0.1	4	7.5	0.0	2.6	2	0	0	2	2	2	0	HTH	domain
RPA_C	PF08784.11	gi|345007182|ref|YP_004810034.1|	-	0.068	13.8	0.0	0.19	12.4	0.0	1.7	2	0	0	2	2	1	0	Replication	protein	A	C	terminal
Sigma70_r4	PF04545.16	gi|345007182|ref|YP_004810034.1|	-	0.11	12.1	0.1	2.2	7.9	0.0	2.4	2	0	0	2	2	2	0	Sigma-70,	region	4
HTH_Tnp_Tc3_1	PF11427.8	gi|345007182|ref|YP_004810034.1|	-	0.17	11.7	0.2	1.1e+02	2.8	0.0	3.3	3	0	0	3	3	3	0	Tc3	transposase
PadR	PF03551.14	gi|345007183|ref|YP_004810035.1|	-	1.5e-05	24.9	0.0	2.6e-05	24.1	0.0	1.4	1	0	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
DUF2513	PF10711.9	gi|345007183|ref|YP_004810035.1|	-	2.5e-05	24.5	0.0	4.5e-05	23.7	0.0	1.5	1	1	0	1	1	1	1	Hypothetical	protein	(DUF2513)
FUR	PF01475.19	gi|345007183|ref|YP_004810035.1|	-	2.8e-05	24.3	0.1	5.3e-05	23.4	0.0	1.5	2	0	0	2	2	2	1	Ferric	uptake	regulator	family
DUF86	PF01934.17	gi|345007183|ref|YP_004810035.1|	-	0.0022	17.9	0.1	0.0079	16.0	0.0	1.7	1	1	1	2	2	2	1	Protein	of	unknown	function	DUF86
HTH_11	PF08279.12	gi|345007183|ref|YP_004810035.1|	-	0.0022	17.9	0.0	0.0046	16.9	0.0	1.6	1	0	0	1	1	1	1	HTH	domain
HTH_20	PF12840.7	gi|345007183|ref|YP_004810035.1|	-	0.003	17.6	0.0	0.0059	16.6	0.0	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_24	PF13412.6	gi|345007183|ref|YP_004810035.1|	-	0.0077	15.8	0.2	0.031	13.9	0.0	2.1	3	0	0	3	3	3	1	Winged	helix-turn-helix	DNA-binding
RuBisCO_small	PF00101.20	gi|345007183|ref|YP_004810035.1|	-	0.015	15.3	0.0	0.061	13.3	0.1	1.9	1	1	0	1	1	1	0	Ribulose	bisphosphate	carboxylase,	small	chain
TrmB	PF01978.19	gi|345007183|ref|YP_004810035.1|	-	0.019	14.9	0.0	0.044	13.7	0.0	1.7	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
HTH_5	PF01022.20	gi|345007183|ref|YP_004810035.1|	-	0.043	13.7	0.0	0.079	12.8	0.0	1.4	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
MarR_2	PF12802.7	gi|345007183|ref|YP_004810035.1|	-	0.046	13.6	0.0	0.11	12.4	0.0	1.7	1	1	0	1	1	1	0	MarR	family
HxlR	PF01638.17	gi|345007183|ref|YP_004810035.1|	-	0.087	12.7	0.0	0.21	11.5	0.0	1.7	1	1	0	1	1	1	0	HxlR-like	helix-turn-helix
Stk19	PF10494.9	gi|345007183|ref|YP_004810035.1|	-	0.1	12.3	0.0	0.12	12.1	0.0	1.1	1	0	0	1	1	1	0	Serine-threonine	protein	kinase	19
HTH_27	PF13463.6	gi|345007183|ref|YP_004810035.1|	-	0.13	12.8	0.0	0.3	11.6	0.0	1.6	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
Mnd1	PF03962.15	gi|345007183|ref|YP_004810035.1|	-	0.16	12.3	0.1	0.28	11.5	0.1	1.4	1	0	0	1	1	1	0	Mnd1	HTH	domain
HTH_36	PF13730.6	gi|345007183|ref|YP_004810035.1|	-	0.17	11.9	0.0	0.29	11.1	0.0	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain
SWIM	PF04434.17	gi|345007185|ref|YP_004810037.1|	-	0.008	15.8	0.6	0.021	14.5	0.6	1.7	1	1	0	1	1	1	1	SWIM	zinc	finger
Peptidase_M78	PF06114.13	gi|345007186|ref|YP_004810038.1|	-	5.1e-05	23.2	0.0	8.4e-05	22.5	0.0	1.4	1	0	0	1	1	1	1	IrrE	N-terminal-like	domain
SprT-like	PF10263.9	gi|345007186|ref|YP_004810038.1|	-	0.013	15.4	0.1	0.063	13.1	0.0	2.0	2	0	0	2	2	2	0	SprT-like	family
Aminopep	PF10023.9	gi|345007186|ref|YP_004810038.1|	-	0.039	13.3	0.1	0.079	12.3	0.1	1.5	1	0	0	1	1	1	0	Putative	aminopeptidase
Zn_Tnp_IS1595	PF12760.7	gi|345007187|ref|YP_004810039.1|	-	7.7e-05	22.6	0.7	0.17	11.9	0.1	2.1	2	0	0	2	2	2	2	Transposase	zinc-ribbon	domain
DUF1272	PF06906.11	gi|345007187|ref|YP_004810039.1|	-	8.5e-05	22.6	1.3	9.1e-05	22.5	1.3	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1272)
DZR	PF12773.7	gi|345007187|ref|YP_004810039.1|	-	0.00013	21.9	0.8	0.00015	21.7	0.8	1.1	1	0	0	1	1	1	1	Double	zinc	ribbon
HypA	PF01155.19	gi|345007187|ref|YP_004810039.1|	-	0.00014	21.8	0.6	0.00014	21.8	0.6	1.1	1	0	0	1	1	1	1	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
zinc_ribbon_2	PF13240.6	gi|345007187|ref|YP_004810039.1|	-	0.00033	20.3	2.3	0.0004	20.0	2.3	1.2	1	0	0	1	1	1	1	zinc-ribbon	domain
zf-ribbon_3	PF13248.6	gi|345007187|ref|YP_004810039.1|	-	0.00046	19.5	1.3	0.00066	19.0	1.3	1.2	1	0	0	1	1	1	1	zinc-ribbon	domain
zinc_ribbon_15	PF17032.5	gi|345007187|ref|YP_004810039.1|	-	0.00055	20.6	0.4	0.00058	20.6	0.4	1.1	1	0	0	1	1	1	1	zinc-ribbon	family
Zn-ribbon_8	PF09723.10	gi|345007187|ref|YP_004810039.1|	-	0.001	19.1	5.1	0.0036	17.4	5.1	1.8	1	1	0	1	1	1	1	Zinc	ribbon	domain
UPF0547	PF10571.9	gi|345007187|ref|YP_004810039.1|	-	0.0028	17.7	3.5	0.0092	16.0	3.5	1.8	1	1	0	1	1	1	1	Uncharacterised	protein	family	UPF0547
zf-C3H2C3	PF17122.5	gi|345007187|ref|YP_004810039.1|	-	0.0057	16.7	1.6	0.0078	16.2	1.6	1.2	1	0	0	1	1	1	1	Zinc-finger
NRDD	PF13597.6	gi|345007187|ref|YP_004810039.1|	-	0.0091	14.8	0.7	0.0091	14.8	0.7	1.0	1	0	0	1	1	1	1	Anaerobic	ribonucleoside-triphosphate	reductase
TackOD1	PF18551.1	gi|345007187|ref|YP_004810039.1|	-	0.013	15.1	0.1	0.013	15.1	0.1	1.0	1	0	0	1	1	1	0	Thaumarchaeal	output	domain	1
zf-C3HC4_3	PF13920.6	gi|345007187|ref|YP_004810039.1|	-	0.018	14.9	0.3	0.021	14.7	0.3	1.1	1	0	0	1	1	1	0	Zinc	finger,	C3HC4	type	(RING	finger)
OrfB_Zn_ribbon	PF07282.11	gi|345007187|ref|YP_004810039.1|	-	0.021	14.8	2.5	0.14	12.1	0.6	2.0	1	1	1	2	2	2	0	Putative	transposase	DNA-binding	domain
TFIIS_C	PF01096.18	gi|345007187|ref|YP_004810039.1|	-	0.023	14.5	2.7	2.3	8.1	0.1	2.2	2	0	0	2	2	2	0	Transcription	factor	S-II	(TFIIS)
zf-IS66	PF13005.7	gi|345007187|ref|YP_004810039.1|	-	0.026	14.9	3.2	1.8	9.0	0.2	2.2	2	0	0	2	2	2	0	zinc-finger	binding	domain	of	transposase	IS66
Zn_ribbon_SprT	PF17283.2	gi|345007187|ref|YP_004810039.1|	-	0.03	14.2	1.8	0.38	10.7	0.1	2.0	1	1	1	2	2	2	0	SprT-like	zinc	ribbon	domain
zf-FPG_IleRS	PF06827.14	gi|345007187|ref|YP_004810039.1|	-	0.03	14.2	1.4	3.9	7.4	0.1	2.2	2	0	0	2	2	2	0	Zinc	finger	found	in	FPG	and	IleRS
zf-P11	PF03854.14	gi|345007187|ref|YP_004810039.1|	-	0.032	13.9	0.1	0.039	13.6	0.1	1.1	1	0	0	1	1	1	0	P-11	zinc	finger
RecR	PF02132.15	gi|345007187|ref|YP_004810039.1|	-	0.033	13.7	1.3	0.06	12.9	1.4	1.4	2	0	0	2	2	2	0	RecR	protein
Prim_Zn_Ribbon	PF08273.12	gi|345007187|ref|YP_004810039.1|	-	0.038	14.3	4.9	0.13	12.6	0.7	2.1	1	1	1	2	2	2	0	Zinc-binding	domain	of	primase-helicase
NOB1_Zn_bind	PF08772.11	gi|345007187|ref|YP_004810039.1|	-	0.042	14.0	1.1	0.051	13.7	1.1	1.2	1	0	0	1	1	1	0	Nin	one	binding	(NOB1)	Zn-ribbon	like
zf-BED	PF02892.15	gi|345007187|ref|YP_004810039.1|	-	0.056	13.5	1.0	0.075	13.1	1.0	1.3	1	0	0	1	1	1	0	BED	zinc	finger
DUF35_N	PF12172.8	gi|345007187|ref|YP_004810039.1|	-	0.093	12.6	4.0	0.19	11.6	4.0	1.5	1	1	0	1	1	1	0	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
Lar_restr_allev	PF14354.6	gi|345007187|ref|YP_004810039.1|	-	0.094	13.1	3.1	0.98	9.8	0.3	2.1	1	1	1	2	2	2	0	Restriction	alleviation	protein	Lar
zf-RRN7	PF11781.8	gi|345007187|ref|YP_004810039.1|	-	0.1	12.3	4.6	2.8	7.7	0.2	2.2	2	0	0	2	2	2	0	Zinc-finger	of	RNA-polymerase	I-specific	TFIIB,	Rrn7
RNA_POL_M_15KD	PF02150.16	gi|345007187|ref|YP_004810039.1|	-	0.14	12.1	2.8	0.62	10.0	0.1	2.1	1	1	1	2	2	2	0	RNA	polymerases	M/15	Kd	subunit
zinc_ribbon_9	PF14369.6	gi|345007187|ref|YP_004810039.1|	-	0.37	11.1	3.7	2.6	8.4	4.0	1.9	1	1	1	2	2	2	0	zinc-ribbon
zf-C2HC_2	PF13913.6	gi|345007187|ref|YP_004810039.1|	-	0.45	10.5	4.3	5.3	7.1	0.3	2.1	2	0	0	2	2	2	0	zinc-finger	of	a	C2HC-type
Rubredoxin_2	PF18073.1	gi|345007187|ref|YP_004810039.1|	-	0.49	10.2	5.2	3.9	7.3	5.2	2.0	1	1	0	1	1	1	0	Rubredoxin	metal	binding	domain
zf_UBZ	PF18439.1	gi|345007187|ref|YP_004810039.1|	-	1.5	8.4	4.2	8.1	6.1	0.2	2.1	1	1	1	2	2	2	0	Ubiquitin-Binding	Zinc	Finger
Rrf2	PF02082.20	gi|345007191|ref|YP_004810043.1|	-	0.0007	19.9	0.0	0.12	12.8	0.0	2.9	2	1	1	3	3	3	1	Transcriptional	regulator
HTH_IclR	PF09339.10	gi|345007191|ref|YP_004810043.1|	-	0.016	15.0	0.0	0.031	14.1	0.0	1.4	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
HTH_28	PF13518.6	gi|345007191|ref|YP_004810043.1|	-	0.026	14.6	0.4	0.054	13.6	0.0	1.7	2	0	0	2	2	2	0	Helix-turn-helix	domain
TrmB	PF01978.19	gi|345007191|ref|YP_004810043.1|	-	0.076	12.9	0.1	0.13	12.1	0.1	1.3	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
MarR_2	PF12802.7	gi|345007191|ref|YP_004810043.1|	-	0.095	12.6	0.0	0.18	11.7	0.0	1.4	1	0	0	1	1	1	0	MarR	family
Phage_NinH	PF06322.11	gi|345007191|ref|YP_004810043.1|	-	0.11	12.4	0.0	0.21	11.5	0.0	1.5	1	0	0	1	1	1	0	Phage	NinH	protein
Fe_dep_repress	PF01325.19	gi|345007191|ref|YP_004810043.1|	-	0.13	12.5	0.2	0.34	11.1	0.0	1.8	2	0	0	2	2	2	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_38	PF13936.6	gi|345007191|ref|YP_004810043.1|	-	0.16	11.7	0.1	0.27	11.0	0.1	1.3	1	0	0	1	1	1	0	Helix-turn-helix	domain
TSC22	PF01166.18	gi|345007192|ref|YP_004810044.1|	-	0.01	16.1	0.0	0.017	15.4	0.0	1.3	1	0	0	1	1	1	0	TSC-22/dip/bun	family
AraC_binding_2	PF14525.6	gi|345007193|ref|YP_004810045.1|	-	0.039	13.6	0.1	0.068	12.9	0.1	1.4	1	1	0	1	1	1	0	AraC-binding-like	domain
Mrr_cat	PF04471.12	gi|345007194|ref|YP_004810046.1|	-	5e-29	100.7	0.0	8.9e-29	99.9	0.0	1.4	1	0	0	1	1	1	1	Restriction	endonuclease
DZR	PF12773.7	gi|345007194|ref|YP_004810046.1|	-	0.0055	16.7	0.4	0.0055	16.7	0.4	1.8	2	0	0	2	2	2	1	Double	zinc	ribbon
Siva	PF05458.12	gi|345007194|ref|YP_004810046.1|	-	0.035	13.8	1.6	0.055	13.1	1.6	1.3	1	0	0	1	1	1	0	Cd27	binding	protein	(Siva)
zf-ribbon_3	PF13248.6	gi|345007194|ref|YP_004810046.1|	-	0.039	13.4	2.5	0.1	12.0	2.5	1.7	1	0	0	1	1	1	0	zinc-ribbon	domain
DUF3797	PF12677.7	gi|345007194|ref|YP_004810046.1|	-	0.05	13.5	0.3	0.16	11.9	0.3	1.8	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3797)
zinc_ribbon_15	PF17032.5	gi|345007194|ref|YP_004810046.1|	-	0.054	14.3	0.5	0.054	14.3	0.5	1.9	2	0	0	2	2	2	0	zinc-ribbon	family
DUF865	PF05906.11	gi|345007194|ref|YP_004810046.1|	-	0.13	12.1	0.1	0.38	10.6	0.1	1.8	1	0	0	1	1	1	0	Herpesvirus-7	repeat	of	unknown	function	(DUF865)
zinc_ribbon_2	PF13240.6	gi|345007194|ref|YP_004810046.1|	-	0.37	10.6	5.5	0.11	12.2	2.3	1.9	2	0	0	2	2	2	0	zinc-ribbon	domain
NOB1_Zn_bind	PF08772.11	gi|345007194|ref|YP_004810046.1|	-	0.45	10.7	2.6	1.2	9.4	2.6	1.6	1	0	0	1	1	1	0	Nin	one	binding	(NOB1)	Zn-ribbon	like
Metallophos	PF00149.28	gi|345007196|ref|YP_004810048.1|	-	6.8e-15	56.1	0.7	1.2e-14	55.3	0.7	1.4	1	0	0	1	1	1	1	Calcineurin-like	phosphoesterase
Metallophos_2	PF12850.7	gi|345007196|ref|YP_004810048.1|	-	3.7e-13	50.0	0.3	6.3e-13	49.3	0.3	1.3	1	0	0	1	1	1	1	Calcineurin-like	phosphoesterase	superfamily	domain
GFA	PF04828.14	gi|345007197|ref|YP_004810049.1|	-	0.015	15.6	0.8	0.39	11.1	0.1	2.2	1	1	1	2	2	2	0	Glutathione-dependent	formaldehyde-activating	enzyme
DZR	PF12773.7	gi|345007197|ref|YP_004810049.1|	-	0.021	14.9	0.5	0.034	14.2	0.5	1.3	1	0	0	1	1	1	0	Double	zinc	ribbon
zinc_ribbon_2	PF13240.6	gi|345007197|ref|YP_004810049.1|	-	0.026	14.2	2.1	3.2	7.6	0.1	2.3	2	0	0	2	2	2	0	zinc-ribbon	domain
Nudix_N_2	PF14803.6	gi|345007197|ref|YP_004810049.1|	-	0.044	13.7	1.8	6.2	6.8	0.1	2.7	3	0	0	3	3	3	0	Nudix	N-terminal
DUF2318	PF10080.9	gi|345007197|ref|YP_004810049.1|	-	0.085	13.0	0.1	0.11	12.6	0.1	1.3	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2318)
A2L_zn_ribbon	PF08792.10	gi|345007197|ref|YP_004810049.1|	-	0.097	12.4	0.8	1	9.2	0.1	2.2	2	0	0	2	2	2	0	A2L	zinc	ribbon	domain
DNA_ligase_ZBD	PF03119.16	gi|345007197|ref|YP_004810049.1|	-	0.2	11.7	3.2	1.5	8.9	0.3	2.5	2	0	0	2	2	2	0	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
RNA_POL_M_15KD	PF02150.16	gi|345007198|ref|YP_004810050.1|	-	0.01	15.7	0.1	0.01	15.7	0.1	2.1	2	0	0	2	2	2	1	RNA	polymerases	M/15	Kd	subunit
Zn_Tnp_IS1	PF03811.13	gi|345007198|ref|YP_004810050.1|	-	0.016	14.9	0.1	0.032	14.0	0.1	1.5	1	0	0	1	1	1	0	InsA	N-terminal	domain
Lar_restr_allev	PF14354.6	gi|345007198|ref|YP_004810050.1|	-	0.031	14.6	0.5	0.085	13.2	0.5	1.7	2	0	0	2	2	2	0	Restriction	alleviation	protein	Lar
OrfB_Zn_ribbon	PF07282.11	gi|345007198|ref|YP_004810050.1|	-	0.1	12.5	1.0	0.26	11.2	0.9	1.7	1	1	0	1	1	1	0	Putative	transposase	DNA-binding	domain
Elf1	PF05129.13	gi|345007198|ref|YP_004810050.1|	-	0.11	12.6	0.1	0.18	11.8	0.1	1.4	1	1	0	1	1	1	0	Transcription	elongation	factor	Elf1	like
Rubredoxin_2	PF18073.1	gi|345007198|ref|YP_004810050.1|	-	0.14	11.9	0.4	0.14	11.9	0.4	2.3	2	0	0	2	2	2	0	Rubredoxin	metal	binding	domain
Zn-ribbon_8	PF09723.10	gi|345007198|ref|YP_004810050.1|	-	0.28	11.3	2.5	14	5.9	0.2	2.3	2	0	0	2	2	2	0	Zinc	ribbon	domain
NIR_SIR_ferr	PF03460.17	gi|345007202|ref|YP_004810054.1|	-	0.061	13.2	0.0	2	8.3	0.0	2.2	2	0	0	2	2	2	0	Nitrite/Sulfite	reductase	ferredoxin-like	half	domain
DDE_Tnp_IS66	PF03050.14	gi|345007204|ref|YP_004810056.1|	-	4.4e-49	167.5	0.2	4.4e-49	167.5	0.2	1.9	2	0	0	2	2	2	1	Transposase	IS66	family
SlyX	PF04102.12	gi|345007204|ref|YP_004810056.1|	-	0.00015	22.3	5.5	0.00052	20.6	5.5	1.9	1	0	0	1	1	1	1	SlyX
MscS_porin	PF12795.7	gi|345007204|ref|YP_004810056.1|	-	0.0008	19.0	5.1	0.0008	19.0	5.1	1.8	2	0	0	2	2	2	1	Mechanosensitive	ion	channel	porin	domain
UPF0242	PF06785.11	gi|345007204|ref|YP_004810056.1|	-	0.0026	17.9	11.2	0.0048	17.0	11.2	1.4	1	0	0	1	1	1	1	Uncharacterised	protein	family	(UPF0242)	N-terminus
DUF16	PF01519.16	gi|345007204|ref|YP_004810056.1|	-	0.0029	18.1	5.6	0.0061	17.0	5.6	1.4	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF16
zf-IS66	PF13005.7	gi|345007204|ref|YP_004810056.1|	-	0.0036	17.7	3.7	0.0036	17.7	3.7	2.6	3	0	0	3	3	1	1	zinc-finger	binding	domain	of	transposase	IS66
HemX	PF04375.14	gi|345007204|ref|YP_004810056.1|	-	0.0046	16.3	2.5	0.0074	15.6	2.5	1.2	1	0	0	1	1	1	1	HemX,	putative	uroporphyrinogen-III	C-methyltransferase
Atg14	PF10186.9	gi|345007204|ref|YP_004810056.1|	-	0.006	15.7	4.1	0.01	15.0	4.1	1.3	1	0	0	1	1	1	1	Vacuolar	sorting	38	and	autophagy-related	subunit	14
SKA1	PF07160.12	gi|345007204|ref|YP_004810056.1|	-	0.0097	15.8	0.7	0.017	15.0	0.7	1.3	1	0	0	1	1	1	1	Spindle	and	kinetochore-associated	protein	1
YkyA	PF10368.9	gi|345007204|ref|YP_004810056.1|	-	0.021	14.5	6.4	0.037	13.7	6.4	1.2	1	0	0	1	1	1	0	Putative	cell-wall	binding	lipoprotein
ATG16	PF08614.11	gi|345007204|ref|YP_004810056.1|	-	0.027	14.7	7.0	0.027	14.7	7.0	2.1	3	0	0	3	3	1	0	Autophagy	protein	16	(ATG16)
HOOK	PF05622.12	gi|345007204|ref|YP_004810056.1|	-	0.03	12.5	6.0	0.044	11.9	6.0	1.1	1	0	0	1	1	1	0	HOOK	protein
DDE_Tnp_IS240	PF13610.6	gi|345007204|ref|YP_004810056.1|	-	0.037	14.3	3.3	0.43	10.8	0.0	2.6	2	1	0	2	2	2	0	DDE	domain
AAA_23	PF13476.6	gi|345007204|ref|YP_004810056.1|	-	0.037	14.5	4.7	0.08	13.4	4.7	1.5	1	0	0	1	1	1	0	AAA	domain
Noelin-1	PF12308.8	gi|345007204|ref|YP_004810056.1|	-	0.042	13.8	2.0	0.085	12.9	0.9	1.9	2	0	0	2	2	2	0	Neurogenesis	glycoprotein
Phage_Mu_Gam	PF07352.12	gi|345007204|ref|YP_004810056.1|	-	0.048	13.6	4.8	0.087	12.7	4.8	1.4	1	0	0	1	1	1	0	Bacteriophage	Mu	Gam	like	protein
DUF3584	PF12128.8	gi|345007204|ref|YP_004810056.1|	-	0.059	10.9	6.5	0.088	10.3	6.5	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3584)
XhlA	PF10779.9	gi|345007204|ref|YP_004810056.1|	-	0.062	13.5	8.4	0.15	12.3	8.4	1.7	1	0	0	1	1	1	0	Haemolysin	XhlA
TMPIT	PF07851.13	gi|345007204|ref|YP_004810056.1|	-	0.077	12.2	3.2	0.12	11.6	3.2	1.2	1	0	0	1	1	1	0	TMPIT-like	protein
Phage_HK97_TLTM	PF06120.11	gi|345007204|ref|YP_004810056.1|	-	0.094	11.9	1.1	0.15	11.3	1.1	1.2	1	0	0	1	1	1	0	Tail	length	tape	measure	protein
Exonuc_VII_L	PF02601.15	gi|345007204|ref|YP_004810056.1|	-	0.1	12.1	1.3	0.24	10.9	1.3	1.5	1	0	0	1	1	1	0	Exonuclease	VII,	large	subunit
Fmp27_WPPW	PF10359.9	gi|345007204|ref|YP_004810056.1|	-	0.11	11.3	2.2	0.17	10.7	2.2	1.2	1	0	0	1	1	1	0	RNA	pol	II	promoter	Fmp27	protein	domain
DUF1664	PF07889.12	gi|345007204|ref|YP_004810056.1|	-	0.11	12.5	2.0	0.21	11.7	2.0	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1664)
FPP	PF05911.11	gi|345007204|ref|YP_004810056.1|	-	0.11	10.6	5.4	0.15	10.2	5.4	1.1	1	0	0	1	1	1	0	Filament-like	plant	protein,	long	coiled-coil
HSBP1	PF06825.12	gi|345007204|ref|YP_004810056.1|	-	0.18	11.7	5.5	0.45	10.4	1.1	2.4	1	1	0	2	2	2	0	Heat	shock	factor	binding	protein	1
DUF4446	PF14584.6	gi|345007204|ref|YP_004810056.1|	-	0.19	11.7	2.9	0.34	10.9	2.9	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF4446)
BST2	PF16716.5	gi|345007204|ref|YP_004810056.1|	-	0.26	11.9	6.2	0.68	10.5	6.2	1.7	1	0	0	1	1	1	0	Bone	marrow	stromal	antigen	2
FlaC_arch	PF05377.11	gi|345007204|ref|YP_004810056.1|	-	0.31	11.5	7.4	0.72	10.3	7.4	1.6	1	0	0	1	1	1	0	Flagella	accessory	protein	C	(FlaC)
FliS	PF02561.14	gi|345007204|ref|YP_004810056.1|	-	0.37	11.1	3.1	3.2	8.0	0.6	2.4	2	0	0	2	2	2	0	Flagellar	protein	FliS
AAA_13	PF13166.6	gi|345007204|ref|YP_004810056.1|	-	0.84	8.2	4.7	1.2	7.6	4.7	1.1	1	0	0	1	1	1	0	AAA	domain
ATP-synt_E	PF05680.12	gi|345007204|ref|YP_004810056.1|	-	0.87	10.0	4.7	2.7	8.4	4.7	1.9	1	0	0	1	1	1	0	ATP	synthase	E	chain
Fzo_mitofusin	PF04799.13	gi|345007204|ref|YP_004810056.1|	-	0.88	9.1	3.3	1.6	8.2	3.3	1.3	1	0	0	1	1	1	0	fzo-like	conserved	region
Synaptobrevin	PF00957.21	gi|345007204|ref|YP_004810056.1|	-	1.9	8.3	3.4	3.9	7.3	3.4	1.4	1	0	0	1	1	1	0	Synaptobrevin
PKcGMP_CC	PF16808.5	gi|345007204|ref|YP_004810056.1|	-	2	8.3	20.5	2.9	7.8	13.4	2.9	1	1	1	2	2	2	0	Coiled-coil	N-terminus	of	cGMP-dependent	protein	kinase
UPF0449	PF15136.6	gi|345007204|ref|YP_004810056.1|	-	2.9	8.4	10.9	14	6.3	5.1	2.8	2	0	0	2	2	2	0	Uncharacterised	protein	family	UPF0449
Spc7	PF08317.11	gi|345007204|ref|YP_004810056.1|	-	3.7	6.3	14.0	0.086	11.7	6.7	1.8	2	0	0	2	2	2	0	Spc7	kinetochore	protein
TMF_DNA_bd	PF12329.8	gi|345007204|ref|YP_004810056.1|	-	5.3	7.1	15.6	0.74	9.8	11.5	1.7	2	0	0	2	2	1	0	TATA	element	modulatory	factor	1	DNA	binding
FemAB	PF02388.16	gi|345007204|ref|YP_004810056.1|	-	5.4	5.8	6.3	8.1	5.2	6.3	1.1	1	0	0	1	1	1	0	FemAB	family
DUF3552	PF12072.8	gi|345007204|ref|YP_004810056.1|	-	5.5	6.4	21.2	0.04	13.3	11.5	2.0	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF3552)
DUF5446	PF17522.2	gi|345007204|ref|YP_004810056.1|	-	6.6	7.0	12.0	23	5.3	12.0	1.9	1	0	0	1	1	1	0	Family	of	unknown	function	(DUF5446)
Med9	PF07544.13	gi|345007204|ref|YP_004810056.1|	-	6.6	6.9	12.5	45	4.2	12.5	2.3	1	1	0	1	1	1	0	RNA	polymerase	II	transcription	mediator	complex	subunit	9
Spt4	PF06093.13	gi|345007205|ref|YP_004810057.1|	-	0.0011	19.0	0.8	0.0046	17.0	0.1	2.2	2	0	0	2	2	2	1	Spt4/RpoE2	zinc	finger
HypA	PF01155.19	gi|345007205|ref|YP_004810057.1|	-	0.0019	18.2	3.9	0.084	12.9	0.4	2.2	2	0	0	2	2	2	2	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
RNA_POL_M_15KD	PF02150.16	gi|345007205|ref|YP_004810057.1|	-	0.024	14.5	7.9	0.59	10.0	0.2	4.0	4	0	0	4	4	4	0	RNA	polymerases	M/15	Kd	subunit
zf-ribbon_3	PF13248.6	gi|345007205|ref|YP_004810057.1|	-	0.024	14.0	3.1	0.024	14.0	3.1	2.6	3	0	0	3	3	3	0	zinc-ribbon	domain
zinc_ribbon_2	PF13240.6	gi|345007205|ref|YP_004810057.1|	-	0.025	14.3	2.6	0.025	14.3	2.6	3.1	3	0	0	3	3	3	0	zinc-ribbon	domain
zf-BED	PF02892.15	gi|345007205|ref|YP_004810057.1|	-	0.11	12.6	2.4	0.69	10.0	0.2	2.8	3	0	0	3	3	3	0	BED	zinc	finger
zinc_ribbon_15	PF17032.5	gi|345007205|ref|YP_004810057.1|	-	0.2	12.4	10.6	0.69	10.7	2.0	2.8	2	1	1	3	3	3	0	zinc-ribbon	family
Zf_RING	PF16744.5	gi|345007205|ref|YP_004810057.1|	-	0.4	10.8	3.2	25	5.1	0.1	3.4	3	0	0	3	3	3	0	KIAA1045	RING	finger
DZR	PF12773.7	gi|345007205|ref|YP_004810057.1|	-	0.44	10.6	10.3	0.76	9.9	2.5	2.7	2	1	0	2	2	2	0	Double	zinc	ribbon
HalOD1	PF18545.1	gi|345007206|ref|YP_004810058.1|	-	1.6e-22	79.5	0.2	4e-22	78.3	0.1	1.7	2	0	0	2	2	2	1	Halobacterial	output	domain	1
DUF835	PF05763.12	gi|345007206|ref|YP_004810058.1|	-	0.0022	17.7	0.0	0.0037	17.0	0.0	1.5	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF835)
PadR	PF03551.14	gi|345007207|ref|YP_004810059.1|	-	1.9e-09	37.3	1.3	6.3e-09	35.7	1.3	1.7	1	1	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
HTH_5	PF01022.20	gi|345007207|ref|YP_004810059.1|	-	1.8e-07	30.9	0.0	2.2e-07	30.6	0.0	1.1	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_20	PF12840.7	gi|345007207|ref|YP_004810059.1|	-	4.6e-06	26.6	0.1	6.9e-06	26.0	0.1	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_34	PF13601.6	gi|345007207|ref|YP_004810059.1|	-	2.2e-05	24.5	0.0	2.6e-05	24.3	0.0	1.2	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
TrmB	PF01978.19	gi|345007207|ref|YP_004810059.1|	-	2.7e-05	23.9	0.0	3.5e-05	23.6	0.0	1.1	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
MarR_2	PF12802.7	gi|345007207|ref|YP_004810059.1|	-	3e-05	23.8	0.0	4e-05	23.4	0.0	1.2	1	0	0	1	1	1	1	MarR	family
HTH_24	PF13412.6	gi|345007207|ref|YP_004810059.1|	-	4.9e-05	22.8	0.1	0.0052	16.3	0.0	2.2	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
HTH_45	PF14947.6	gi|345007207|ref|YP_004810059.1|	-	0.00017	21.5	0.0	0.0002	21.3	0.0	1.1	1	0	0	1	1	1	1	Winged	helix-turn-helix
HTH_11	PF08279.12	gi|345007207|ref|YP_004810059.1|	-	0.00021	21.2	0.0	0.00028	20.8	0.0	1.3	1	1	0	1	1	1	1	HTH	domain
DUF1495	PF07381.11	gi|345007207|ref|YP_004810059.1|	-	0.0017	18.1	0.1	0.002	17.9	0.1	1.4	1	1	0	1	1	1	1	Winged	helix	DNA-binding	domain	(DUF1495)
DUF4364	PF14277.6	gi|345007207|ref|YP_004810059.1|	-	0.002	17.9	0.0	0.0023	17.7	0.0	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4364)
HxlR	PF01638.17	gi|345007207|ref|YP_004810059.1|	-	0.013	15.3	0.0	0.015	15.1	0.0	1.1	1	0	0	1	1	1	0	HxlR-like	helix-turn-helix
DUF505	PF04458.12	gi|345007207|ref|YP_004810059.1|	-	0.03	12.7	0.1	0.03	12.7	0.1	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF505)
FUR	PF01475.19	gi|345007207|ref|YP_004810059.1|	-	0.033	14.3	0.0	0.037	14.2	0.0	1.2	1	1	0	1	1	1	0	Ferric	uptake	regulator	family
Replic_Relax	PF13814.6	gi|345007207|ref|YP_004810059.1|	-	0.04	14.0	0.1	0.04	14.0	0.1	1.1	1	0	0	1	1	1	0	Replication-relaxation
Rrf2	PF02082.20	gi|345007207|ref|YP_004810059.1|	-	0.065	13.6	0.0	0.075	13.4	0.0	1.3	1	0	0	1	1	1	0	Transcriptional	regulator
MarR	PF01047.22	gi|345007207|ref|YP_004810059.1|	-	0.071	13.1	0.0	0.1	12.5	0.0	1.3	1	0	0	1	1	1	0	MarR	family
HTH_40	PF14493.6	gi|345007207|ref|YP_004810059.1|	-	0.094	13.2	0.0	0.1	13.0	0.0	1.2	1	0	0	1	1	1	0	Helix-turn-helix	domain
TFIIB	PF00382.19	gi|345007208|ref|YP_004810060.1|	-	1.3e-27	95.6	0.7	1.8e-12	47.1	0.1	2.4	2	0	0	2	2	2	2	Transcription	factor	TFIIB	repeat
TF_Zn_Ribbon	PF08271.12	gi|345007208|ref|YP_004810060.1|	-	7.1e-12	44.6	4.3	1.4e-11	43.7	4.3	1.5	1	0	0	1	1	1	1	TFIIB	zinc-binding
RB_B	PF01857.20	gi|345007208|ref|YP_004810060.1|	-	0.0029	17.6	0.0	0.0056	16.7	0.0	1.4	1	0	0	1	1	1	1	Retinoblastoma-associated	protein	B	domain
DZR	PF12773.7	gi|345007208|ref|YP_004810060.1|	-	0.027	14.5	1.4	0.057	13.5	1.4	1.4	1	0	0	1	1	1	0	Double	zinc	ribbon
OrfB_Zn_ribbon	PF07282.11	gi|345007208|ref|YP_004810060.1|	-	0.055	13.4	1.8	0.13	12.2	1.8	1.6	1	0	0	1	1	1	0	Putative	transposase	DNA-binding	domain
zinc-ribbons_6	PF07191.12	gi|345007208|ref|YP_004810060.1|	-	0.15	12.1	1.5	0.34	10.9	1.5	1.5	1	0	0	1	1	1	0	zinc-ribbons
PHF5	PF03660.14	gi|345007208|ref|YP_004810060.1|	-	0.19	11.9	1.8	0.43	10.8	1.8	1.5	1	0	0	1	1	1	0	PHF5-like	protein
UPF0547	PF10571.9	gi|345007208|ref|YP_004810060.1|	-	0.2	11.8	1.7	0.43	10.7	1.7	1.6	1	0	0	1	1	1	0	Uncharacterised	protein	family	UPF0547
DDE_Tnp_IS66	PF03050.14	gi|345007210|ref|YP_004810062.1|	-	7e-49	166.8	0.2	7e-49	166.8	0.2	2.0	2	1	0	2	2	2	1	Transposase	IS66	family
ZapB	PF06005.12	gi|345007210|ref|YP_004810062.1|	-	3e-09	37.2	6.3	9.7e-09	35.6	6.3	1.9	1	0	0	1	1	1	1	Cell	division	protein	ZapB
zf-IS66	PF13005.7	gi|345007210|ref|YP_004810062.1|	-	1.9e-05	25.0	4.3	4.5e-05	23.8	4.3	1.7	1	0	0	1	1	1	1	zinc-finger	binding	domain	of	transposase	IS66
YabA	PF06156.13	gi|345007210|ref|YP_004810062.1|	-	4.3e-05	24.1	4.2	0.00014	22.4	4.2	1.8	1	0	0	1	1	1	1	Initiation	control	protein	YabA
CASP_C	PF08172.12	gi|345007210|ref|YP_004810062.1|	-	0.00024	20.6	1.9	0.00039	19.9	1.9	1.2	1	0	0	1	1	1	1	CASP	C	terminal
JIP_LZII	PF16471.5	gi|345007210|ref|YP_004810062.1|	-	0.00056	20.0	3.4	0.0012	19.0	3.4	1.6	1	0	0	1	1	1	1	JNK-interacting	protein	leucine	zipper	II
bZIP_1	PF00170.21	gi|345007210|ref|YP_004810062.1|	-	0.0018	18.3	7.8	0.004	17.2	7.8	1.6	1	0	0	1	1	1	1	bZIP	transcription	factor
DDE_Tnp_IS240	PF13610.6	gi|345007210|ref|YP_004810062.1|	-	0.003	17.8	0.8	0.013	15.7	0.0	2.3	2	1	0	2	2	2	1	DDE	domain
SlyX	PF04102.12	gi|345007210|ref|YP_004810062.1|	-	0.0054	17.3	5.4	0.014	16.0	5.4	1.7	1	0	0	1	1	1	1	SlyX
NUDE_C	PF04880.13	gi|345007210|ref|YP_004810062.1|	-	0.013	16.0	4.4	0.034	14.6	4.4	1.6	1	0	0	1	1	1	0	NUDE	protein,	C-terminal	conserved	region
CCDC106	PF15794.5	gi|345007210|ref|YP_004810062.1|	-	0.02	14.6	3.6	0.042	13.6	3.6	1.4	1	0	0	1	1	1	0	Coiled-coil	domain-containing	protein	106
Cnn_1N	PF07989.11	gi|345007210|ref|YP_004810062.1|	-	0.026	14.7	6.4	0.056	13.6	6.4	1.5	1	0	0	1	1	1	0	Centrosomin	N-terminal	motif	1
SKA1	PF07160.12	gi|345007210|ref|YP_004810062.1|	-	0.029	14.2	0.9	0.057	13.3	0.9	1.4	1	0	0	1	1	1	0	Spindle	and	kinetochore-associated	protein	1
CENP-H	PF05837.12	gi|345007210|ref|YP_004810062.1|	-	0.03	14.7	3.3	0.072	13.5	3.3	1.6	1	0	0	1	1	1	0	Centromere	protein	H	(CENP-H)
DUF4201	PF13870.6	gi|345007210|ref|YP_004810062.1|	-	0.039	13.7	3.6	0.078	12.7	3.6	1.5	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4201)
RP-C_C	PF11800.8	gi|345007210|ref|YP_004810062.1|	-	0.04	14.0	1.2	0.082	13.0	1.2	1.5	1	0	0	1	1	1	0	Replication	protein	C	C-terminal	region
V_ATPase_I	PF01496.19	gi|345007210|ref|YP_004810062.1|	-	0.049	11.6	2.1	0.07	11.1	2.1	1.1	1	0	0	1	1	1	0	V-type	ATPase	116kDa	subunit	family
HSBP1	PF06825.12	gi|345007210|ref|YP_004810062.1|	-	0.06	13.2	0.3	0.11	12.3	0.3	1.4	1	0	0	1	1	1	0	Heat	shock	factor	binding	protein	1
XhlA	PF10779.9	gi|345007210|ref|YP_004810062.1|	-	0.067	13.4	5.8	0.18	12.0	5.8	1.7	1	0	0	1	1	1	0	Haemolysin	XhlA
FlaC_arch	PF05377.11	gi|345007210|ref|YP_004810062.1|	-	0.072	13.5	3.1	0.17	12.3	3.1	1.6	1	0	0	1	1	1	0	Flagella	accessory	protein	C	(FlaC)
TSC22	PF01166.18	gi|345007210|ref|YP_004810062.1|	-	0.087	13.1	14.9	0.11	12.8	7.5	3.3	2	1	1	3	3	3	0	TSC-22/dip/bun	family
HOOK	PF05622.12	gi|345007210|ref|YP_004810062.1|	-	0.093	10.9	3.9	0.13	10.3	3.9	1.1	1	0	0	1	1	1	0	HOOK	protein
GAS	PF13851.6	gi|345007210|ref|YP_004810062.1|	-	0.12	11.8	6.2	0.21	10.9	6.2	1.3	1	0	0	1	1	1	0	Growth-arrest	specific	micro-tubule	binding
DUF4988	PF16378.5	gi|345007210|ref|YP_004810062.1|	-	0.14	11.8	3.3	0.89	9.2	1.5	2.2	2	0	0	2	2	2	0	Domain	of	unknown	function
HALZ	PF02183.18	gi|345007210|ref|YP_004810062.1|	-	0.2	11.9	7.1	0.26	11.6	6.1	1.8	2	0	0	2	2	1	0	Homeobox	associated	leucine	zipper
EMP24_GP25L	PF01105.24	gi|345007210|ref|YP_004810062.1|	-	0.24	11.3	5.2	4.1	7.3	4.2	2.2	2	0	0	2	2	2	0	emp24/gp25L/p24	family/GOLD
Synaptobrevin	PF00957.21	gi|345007210|ref|YP_004810062.1|	-	0.25	11.1	1.7	0.43	10.4	1.7	1.3	1	0	0	1	1	1	0	Synaptobrevin
Spc24	PF08286.11	gi|345007210|ref|YP_004810062.1|	-	0.27	11.5	3.5	0.57	10.5	3.5	1.5	1	0	0	1	1	1	0	Spc24	subunit	of	Ndc80
DivIC	PF04977.15	gi|345007210|ref|YP_004810062.1|	-	0.31	10.8	8.4	0.77	9.6	8.0	1.9	1	1	0	1	1	1	0	Septum	formation	initiator
SpoVR	PF04293.13	gi|345007210|ref|YP_004810062.1|	-	0.35	9.5	4.7	0.55	8.9	4.7	1.2	1	0	0	1	1	1	0	SpoVR	like	protein
Shugoshin_N	PF07558.11	gi|345007210|ref|YP_004810062.1|	-	0.62	10.0	6.8	0.15	11.9	2.5	2.0	1	1	1	2	2	2	0	Shugoshin	N-terminal	coiled-coil	region
Jnk-SapK_ap_N	PF09744.9	gi|345007210|ref|YP_004810062.1|	-	0.68	10.1	7.3	1.9	8.7	7.3	1.7	1	0	0	1	1	1	0	JNK_SAPK-associated	protein-1
Chibby	PF14645.6	gi|345007210|ref|YP_004810062.1|	-	0.7	10.3	4.1	1.7	9.1	4.1	1.6	1	0	0	1	1	1	0	Chibby	family
APG6_N	PF17675.1	gi|345007210|ref|YP_004810062.1|	-	0.77	10.3	9.2	1.5	9.3	9.2	1.5	1	0	0	1	1	1	0	Apg6	coiled-coil	region
ADIP	PF11559.8	gi|345007210|ref|YP_004810062.1|	-	0.78	9.8	7.1	1.7	8.7	7.1	1.5	1	0	0	1	1	1	0	Afadin-	and	alpha	-actinin-Binding
Prefoldin_2	PF01920.20	gi|345007210|ref|YP_004810062.1|	-	0.92	9.5	8.3	1.8	8.6	8.3	1.4	1	0	0	1	1	1	0	Prefoldin	subunit
bZIP_2	PF07716.15	gi|345007210|ref|YP_004810062.1|	-	1.2	9.3	14.7	8.7	6.5	6.5	2.6	1	1	1	2	2	2	0	Basic	region	leucine	zipper
GIT_CC	PF16559.5	gi|345007210|ref|YP_004810062.1|	-	1.2	9.0	5.9	2.4	8.1	5.9	1.5	1	0	0	1	1	1	0	GIT	coiled-coil	Rho	guanine	nucleotide	exchange	factor
GrpE	PF01025.19	gi|345007210|ref|YP_004810062.1|	-	1.2	8.8	5.5	2.3	7.9	5.5	1.4	1	0	0	1	1	1	0	GrpE
DUF2205	PF10224.9	gi|345007210|ref|YP_004810062.1|	-	1.5	8.9	5.6	3.6	7.7	5.6	1.6	1	0	0	1	1	1	0	Short	coiled-coil	protein
Astro_capsid_p	PF12226.8	gi|345007210|ref|YP_004810062.1|	-	1.5	7.9	4.8	2.3	7.3	4.8	1.2	1	0	0	1	1	1	0	Turkey	astrovirus	capsid	protein
DUF3552	PF12072.8	gi|345007210|ref|YP_004810062.1|	-	2.1	7.7	7.5	3.7	6.9	7.5	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3552)
DUF3450	PF11932.8	gi|345007210|ref|YP_004810062.1|	-	2.3	7.4	8.2	0.46	9.8	3.0	2.3	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF3450)
NRBF2	PF08961.10	gi|345007210|ref|YP_004810062.1|	-	2.4	7.7	14.9	0.031	13.9	7.5	1.6	2	0	0	2	2	1	0	Nuclear	receptor-binding	factor	2,	autophagy	regulator
UPF0242	PF06785.11	gi|345007210|ref|YP_004810062.1|	-	7.3	6.6	7.8	2.4	8.2	5.0	1.6	2	0	0	2	2	1	0	Uncharacterised	protein	family	(UPF0242)	N-terminus
Glycos_transf_1	PF00534.20	gi|345007211|ref|YP_004810063.1|	-	2.1e-25	89.2	0.0	4.5e-25	88.2	0.0	1.5	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.6	gi|345007211|ref|YP_004810063.1|	-	1.4e-18	67.6	0.0	2.8e-18	66.6	0.0	1.5	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_2	PF13524.6	gi|345007211|ref|YP_004810063.1|	-	4.4e-12	46.2	0.0	1.1e-11	45.0	0.0	1.7	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_transf_4	PF13439.6	gi|345007211|ref|YP_004810063.1|	-	2.6e-07	30.8	0.0	9.1e-07	29.0	0.0	1.9	2	0	0	2	2	2	1	Glycosyltransferase	Family	4
Glyco_trans_4_4	PF13579.6	gi|345007211|ref|YP_004810063.1|	-	7.9e-06	26.4	0.0	1.3e-05	25.7	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	transferase	4-like	domain
Staygreen	PF12638.7	gi|345007211|ref|YP_004810063.1|	-	0.11	12.3	0.1	0.81	9.5	0.0	2.2	2	0	0	2	2	2	0	Staygreen	protein
EntA_Immun	PF08951.10	gi|345007211|ref|YP_004810063.1|	-	0.33	11.3	8.2	0.2	12.0	0.5	3.6	4	0	0	4	4	4	0	Enterocin	A	Immunity
Polbeta	PF18765.1	gi|345007211|ref|YP_004810063.1|	-	1.4	9.1	4.2	4.3	7.5	0.1	2.8	3	0	0	3	3	3	0	Polymerase	beta,	Nucleotidyltransferase
Methyltransf_21	PF05050.12	gi|345007212|ref|YP_004810064.1|	-	2.6e-06	27.6	0.2	3.6e-06	27.1	0.2	1.2	1	0	0	1	1	1	1	Methyltransferase	FkbM	domain
Met_10	PF02475.16	gi|345007212|ref|YP_004810064.1|	-	0.01	15.6	0.0	0.014	15.1	0.0	1.4	1	0	0	1	1	1	0	Met-10+	like-protein
V_cholerae_RfbT	PF05575.11	gi|345007212|ref|YP_004810064.1|	-	0.016	14.5	0.7	0.024	13.9	0.7	1.3	1	1	0	1	1	1	0	Vibrio	cholerae	RfbT	protein
MTS	PF05175.14	gi|345007212|ref|YP_004810064.1|	-	0.026	14.1	0.0	0.045	13.3	0.0	1.3	1	0	0	1	1	1	0	Methyltransferase	small	domain
DDE_Tnp_1	PF01609.21	gi|345007213|ref|YP_004810065.1|	-	0.031	13.9	0.1	0.085	12.5	0.1	1.7	1	1	0	1	1	1	0	Transposase	DDE	domain
DUF2513	PF10711.9	gi|345007214|ref|YP_004810066.1|	-	3.1e-05	24.2	0.0	5.4e-05	23.4	0.0	1.4	1	1	0	1	1	1	1	Hypothetical	protein	(DUF2513)
PadR	PF03551.14	gi|345007214|ref|YP_004810066.1|	-	6.4e-05	22.8	0.0	0.00011	22.0	0.0	1.4	1	0	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
FUR	PF01475.19	gi|345007214|ref|YP_004810066.1|	-	0.00014	22.0	0.1	0.0003	20.9	0.0	1.6	2	0	0	2	2	2	1	Ferric	uptake	regulator	family
HTH_11	PF08279.12	gi|345007214|ref|YP_004810066.1|	-	0.00049	20.0	0.0	0.00098	19.0	0.0	1.6	2	0	0	2	2	2	1	HTH	domain
HTH_20	PF12840.7	gi|345007214|ref|YP_004810066.1|	-	0.0019	18.2	0.0	0.0035	17.4	0.0	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
RuBisCO_small	PF00101.20	gi|345007214|ref|YP_004810066.1|	-	0.0095	15.9	0.0	0.098	12.7	0.0	2.0	1	1	1	2	2	2	1	Ribulose	bisphosphate	carboxylase,	small	chain
DUF86	PF01934.17	gi|345007214|ref|YP_004810066.1|	-	0.01	15.7	0.0	0.033	14.0	0.0	1.7	2	0	0	2	2	2	0	Protein	of	unknown	function	DUF86
HTH_24	PF13412.6	gi|345007214|ref|YP_004810066.1|	-	0.014	14.9	0.1	0.039	13.5	0.0	1.8	2	0	0	2	2	2	0	Winged	helix-turn-helix	DNA-binding
MarR_2	PF12802.7	gi|345007214|ref|YP_004810066.1|	-	0.016	15.1	0.0	0.031	14.2	0.0	1.6	1	1	0	1	1	1	0	MarR	family
TrmB	PF01978.19	gi|345007214|ref|YP_004810066.1|	-	0.016	15.0	0.0	0.034	14.0	0.0	1.7	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
HTH_5	PF01022.20	gi|345007214|ref|YP_004810066.1|	-	0.046	13.6	0.0	0.095	12.6	0.0	1.5	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
Stk19	PF10494.9	gi|345007214|ref|YP_004810066.1|	-	0.12	12.1	0.0	0.14	11.8	0.0	1.1	1	0	0	1	1	1	0	Serine-threonine	protein	kinase	19
MarR	PF01047.22	gi|345007214|ref|YP_004810066.1|	-	0.12	12.3	0.0	0.32	10.9	0.0	1.8	1	1	0	1	1	1	0	MarR	family
HTH_36	PF13730.6	gi|345007214|ref|YP_004810066.1|	-	0.17	11.8	0.0	0.29	11.1	0.0	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain
SWIM	PF04434.17	gi|345007216|ref|YP_004810068.1|	-	0.033	13.9	0.9	0.1	12.3	0.9	1.8	1	1	0	1	1	1	0	SWIM	zinc	finger
Peptidase_M78	PF06114.13	gi|345007217|ref|YP_004810069.1|	-	0.00077	19.4	0.0	0.0012	18.8	0.0	1.4	1	0	0	1	1	1	1	IrrE	N-terminal-like	domain
OGG_N	PF07934.12	gi|345007217|ref|YP_004810069.1|	-	0.076	13.1	0.1	0.2	11.7	0.0	1.8	2	1	0	2	2	2	0	8-oxoguanine	DNA	glycosylase,	N-terminal	domain
SprT-like	PF10263.9	gi|345007217|ref|YP_004810069.1|	-	0.086	12.7	0.2	0.32	10.9	0.1	1.9	2	0	0	2	2	2	0	SprT-like	family
DUF2268	PF10026.9	gi|345007217|ref|YP_004810069.1|	-	0.087	12.4	0.0	0.18	11.3	0.0	1.4	1	0	0	1	1	1	0	Predicted	Zn-dependent	protease	(DUF2268)
HypA	PF01155.19	gi|345007218|ref|YP_004810070.1|	-	0.00029	20.8	1.6	0.00034	20.6	1.6	1.2	1	0	0	1	1	1	1	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
zinc_ribbon_15	PF17032.5	gi|345007218|ref|YP_004810070.1|	-	0.0003	21.5	0.4	0.00036	21.2	0.4	1.2	1	0	0	1	1	1	1	zinc-ribbon	family
DZR	PF12773.7	gi|345007218|ref|YP_004810070.1|	-	0.0004	20.3	2.6	0.00065	19.7	2.6	1.4	1	1	0	1	1	1	1	Double	zinc	ribbon
DUF35_N	PF12172.8	gi|345007218|ref|YP_004810070.1|	-	0.0021	17.9	2.2	0.003	17.4	2.2	1.3	1	0	0	1	1	1	1	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
Zn_Tnp_IS1595	PF12760.7	gi|345007218|ref|YP_004810070.1|	-	0.0029	17.5	2.2	0.38	10.8	0.1	2.3	2	0	0	2	2	2	2	Transposase	zinc-ribbon	domain
UPF0547	PF10571.9	gi|345007218|ref|YP_004810070.1|	-	0.0029	17.6	3.4	0.0029	17.6	3.4	2.2	2	1	0	2	2	2	1	Uncharacterised	protein	family	UPF0547
zf-ribbon_3	PF13248.6	gi|345007218|ref|YP_004810070.1|	-	0.0035	16.7	2.5	0.0044	16.4	1.3	1.8	2	0	0	2	2	2	1	zinc-ribbon	domain
zinc_ribbon_2	PF13240.6	gi|345007218|ref|YP_004810070.1|	-	0.0056	16.4	2.7	0.0098	15.6	2.7	1.4	1	0	0	1	1	1	1	zinc-ribbon	domain
zf-C3H2C3	PF17122.5	gi|345007218|ref|YP_004810070.1|	-	0.0067	16.4	1.5	0.013	15.5	1.5	1.5	1	0	0	1	1	1	1	Zinc-finger
DUF1272	PF06906.11	gi|345007218|ref|YP_004810070.1|	-	0.0071	16.4	2.8	0.0071	16.4	2.8	1.5	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF1272)
RNA_POL_M_15KD	PF02150.16	gi|345007218|ref|YP_004810070.1|	-	0.011	15.6	2.9	0.059	13.3	0.0	2.6	3	0	0	3	3	3	0	RNA	polymerases	M/15	Kd	subunit
Zn-ribbon_8	PF09723.10	gi|345007218|ref|YP_004810070.1|	-	0.024	14.8	6.7	0.29	11.3	5.8	2.6	2	1	0	2	2	2	0	Zinc	ribbon	domain
RecR	PF02132.15	gi|345007218|ref|YP_004810070.1|	-	0.14	11.8	2.6	0.12	11.9	0.9	1.9	2	1	0	2	2	2	0	RecR	protein
NRDD	PF13597.6	gi|345007218|ref|YP_004810070.1|	-	0.17	10.6	1.5	0.17	10.6	1.5	1.0	1	0	0	1	1	1	0	Anaerobic	ribonucleoside-triphosphate	reductase
TFIIS_C	PF01096.18	gi|345007218|ref|YP_004810070.1|	-	0.24	11.3	4.6	6.9	6.6	0.2	2.3	2	0	0	2	2	2	0	Transcription	factor	S-II	(TFIIS)
Prim_Zn_Ribbon	PF08273.12	gi|345007218|ref|YP_004810070.1|	-	0.32	11.3	5.3	1.3	9.4	1.3	2.3	1	1	1	2	2	2	0	Zinc-binding	domain	of	primase-helicase
Rubredoxin_2	PF18073.1	gi|345007218|ref|YP_004810070.1|	-	1.1	9.1	6.2	2.2	8.1	4.1	2.3	2	1	0	2	2	2	0	Rubredoxin	metal	binding	domain
ACP53EA	PF06313.11	gi|345007221|ref|YP_004810073.1|	-	0.088	13.0	0.0	0.15	12.3	0.0	1.4	1	1	0	1	1	1	0	Drosophila	ACP53EA	protein
HMA	PF00403.26	gi|345007222|ref|YP_004810074.1|	-	6.7e-14	52.1	0.7	7.4e-14	51.9	0.7	1.0	1	0	0	1	1	1	1	Heavy-metal-associated	domain
Fer2_BFD	PF04324.15	gi|345007222|ref|YP_004810074.1|	-	0.042	14.2	0.2	1.3	9.4	0.0	2.3	2	0	0	2	2	2	0	BFD-like	[2Fe-2S]	binding	domain
E1-E2_ATPase	PF00122.20	gi|345007223|ref|YP_004810075.1|	-	2.4e-47	160.8	0.0	5.5e-47	159.6	0.0	1.7	1	0	0	1	1	1	1	E1-E2	ATPase
Hydrolase	PF00702.26	gi|345007223|ref|YP_004810075.1|	-	2.1e-39	136.0	3.6	3.9e-39	135.1	3.6	1.5	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
HMA	PF00403.26	gi|345007223|ref|YP_004810075.1|	-	1.4e-08	35.0	0.1	3.2e-08	33.9	0.1	1.7	1	0	0	1	1	1	1	Heavy-metal-associated	domain
Hydrolase_3	PF08282.12	gi|345007223|ref|YP_004810075.1|	-	1.1e-06	28.6	1.1	0.00034	20.4	0.4	2.3	2	0	0	2	2	2	2	haloacid	dehalogenase-like	hydrolase
HAD	PF12710.7	gi|345007223|ref|YP_004810075.1|	-	0.00015	22.2	0.1	0.00042	20.8	0.1	1.7	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Hydrolase_6	PF13344.6	gi|345007223|ref|YP_004810075.1|	-	0.091	12.9	0.0	0.3	11.2	0.0	1.8	1	0	0	1	1	1	0	Haloacid	dehalogenase-like	hydrolase
HTH_20	PF12840.7	gi|345007224|ref|YP_004810076.1|	-	7.6e-11	41.9	1.7	8e-11	41.8	0.2	1.8	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_5	PF01022.20	gi|345007224|ref|YP_004810076.1|	-	8.2e-07	28.8	0.1	3.2e-06	26.9	0.1	2.0	1	1	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_12	PF08461.10	gi|345007224|ref|YP_004810076.1|	-	0.00011	22.0	0.5	0.00026	20.8	0.3	1.8	2	0	0	2	2	2	1	Ribonuclease	R	winged-helix	domain
Nop16	PF09420.10	gi|345007224|ref|YP_004810076.1|	-	0.00017	21.7	0.5	0.00021	21.4	0.5	1.1	1	0	0	1	1	1	1	Ribosome	biogenesis	protein	Nop16
TFIIE_alpha	PF02002.17	gi|345007224|ref|YP_004810076.1|	-	0.00041	20.2	0.6	0.011	15.6	0.2	2.3	1	1	1	2	2	2	1	TFIIE	alpha	subunit
PadR	PF03551.14	gi|345007224|ref|YP_004810076.1|	-	0.001	19.0	0.2	0.0022	17.9	0.2	1.6	1	0	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
FUR	PF01475.19	gi|345007224|ref|YP_004810076.1|	-	0.0015	18.6	0.1	0.003	17.7	0.1	1.4	1	0	0	1	1	1	1	Ferric	uptake	regulator	family
Penicillinase_R	PF03965.16	gi|345007224|ref|YP_004810076.1|	-	0.041	14.3	0.6	0.092	13.1	0.4	1.9	1	1	1	2	2	2	0	Penicillinase	repressor
Type2_restr_D3	PF16902.5	gi|345007224|ref|YP_004810076.1|	-	0.057	13.3	0.4	0.13	12.2	0.4	1.5	1	0	0	1	1	1	0	Type-2	restriction	enzyme	D3	domain
Cor1	PF04803.12	gi|345007224|ref|YP_004810076.1|	-	0.078	13.2	0.0	0.11	12.7	0.0	1.2	1	0	0	1	1	1	0	Cor1/Xlr/Xmr	conserved	region
SBP_bac_3	PF00497.20	gi|345007224|ref|YP_004810076.1|	-	0.14	11.6	0.1	0.34	10.3	0.0	1.7	1	1	0	1	1	1	0	Bacterial	extracellular	solute-binding	proteins,	family	3
Pyr_redox_2	PF07992.14	gi|345007225|ref|YP_004810077.1|	-	1.4e-59	201.8	2.9	2e-59	201.2	2.9	1.2	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_dim	PF02852.22	gi|345007225|ref|YP_004810077.1|	-	6.2e-31	106.9	2.0	8.2e-31	106.5	0.8	1.8	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase,	dimerisation	domain
Pyr_redox	PF00070.27	gi|345007225|ref|YP_004810077.1|	-	7.8e-15	55.2	3.2	7.9e-15	55.2	0.3	2.4	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_oxidored	PF12831.7	gi|345007225|ref|YP_004810077.1|	-	9.9e-06	25.1	1.4	2.7e-05	23.7	0.1	2.0	2	0	0	2	2	2	1	FAD	dependent	oxidoreductase
Pyr_redox_3	PF13738.6	gi|345007225|ref|YP_004810077.1|	-	5.7e-05	22.5	0.6	0.00039	19.8	0.0	2.1	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
GIDA	PF01134.22	gi|345007225|ref|YP_004810077.1|	-	0.0037	16.4	4.8	0.015	14.4	4.6	2.2	2	1	0	2	2	2	1	Glucose	inhibited	division	protein	A
FAD_binding_2	PF00890.24	gi|345007225|ref|YP_004810077.1|	-	0.0041	16.3	1.9	0.0067	15.5	0.1	2.2	2	1	0	3	3	3	1	FAD	binding	domain
NAD_binding_8	PF13450.6	gi|345007225|ref|YP_004810077.1|	-	0.0087	16.3	3.1	2.7	8.3	0.4	2.6	2	0	0	2	2	2	2	NAD(P)-binding	Rossmann-like	domain
HxlR	PF01638.17	gi|345007226|ref|YP_004810078.1|	-	8.6e-15	54.4	0.0	9.9e-15	54.2	0.0	1.1	1	0	0	1	1	1	1	HxlR-like	helix-turn-helix
MarR	PF01047.22	gi|345007226|ref|YP_004810078.1|	-	0.0001	22.2	0.1	0.00021	21.2	0.0	1.6	2	0	0	2	2	2	1	MarR	family
MarR_2	PF12802.7	gi|345007226|ref|YP_004810078.1|	-	0.00027	20.8	0.0	0.00043	20.1	0.0	1.3	1	0	0	1	1	1	1	MarR	family
PadR	PF03551.14	gi|345007226|ref|YP_004810078.1|	-	0.00084	19.2	0.0	0.0013	18.7	0.0	1.3	1	0	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
HTH_34	PF13601.6	gi|345007226|ref|YP_004810078.1|	-	0.0034	17.5	0.0	0.0047	17.1	0.0	1.2	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
HTH_20	PF12840.7	gi|345007226|ref|YP_004810078.1|	-	0.025	14.7	0.0	0.036	14.1	0.0	1.3	1	0	0	1	1	1	0	Helix-turn-helix	domain
FUR	PF01475.19	gi|345007226|ref|YP_004810078.1|	-	0.026	14.7	0.0	0.029	14.5	0.0	1.2	1	0	0	1	1	1	0	Ferric	uptake	regulator	family
HTH_27	PF13463.6	gi|345007226|ref|YP_004810078.1|	-	0.065	13.7	0.0	0.11	13.0	0.0	1.5	1	1	0	1	1	1	0	Winged	helix	DNA-binding	domain
Replic_Relax	PF13814.6	gi|345007226|ref|YP_004810078.1|	-	0.075	13.1	0.0	0.093	12.8	0.0	1.1	1	0	0	1	1	1	0	Replication-relaxation
DUF5518	PF17647.1	gi|345007227|ref|YP_004810079.1|	-	0.0012	19.0	4.8	0.0016	18.5	4.8	1.3	1	0	0	1	1	1	1	Family	of	unknown	function	(DUF5518)
RseC_MucC	PF04246.12	gi|345007227|ref|YP_004810079.1|	-	0.14	12.1	1.7	0.14	12.1	1.0	1.5	1	1	0	1	1	1	0	Positive	regulator	of	sigma(E),	RseC/MucC
UbiA	PF01040.18	gi|345007229|ref|YP_004810081.1|	-	4.1e-60	203.2	24.0	4.1e-60	203.2	24.0	2.7	2	1	0	2	2	2	1	UbiA	prenyltransferase	family
COX15-CtaA	PF02628.15	gi|345007229|ref|YP_004810081.1|	-	3e-09	36.4	35.4	1.2e-05	24.6	7.3	3.7	2	2	1	3	3	3	2	Cytochrome	oxidase	assembly	protein
COX3	PF00510.18	gi|345007230|ref|YP_004810082.1|	-	1.8e-17	64.0	12.6	3.5e-17	63.1	12.4	1.5	1	1	0	1	1	1	1	Cytochrome	c	oxidase	subunit	III
Cyt_c_ox_IV	PF12270.8	gi|345007230|ref|YP_004810082.1|	-	6.4e-06	26.3	0.6	6.4e-06	26.3	0.6	2.9	4	1	0	4	4	4	1	Cytochrome	c	oxidase	subunit	IV
COX2	PF00116.20	gi|345007231|ref|YP_004810083.1|	-	1.2e-14	54.2	1.9	2.2e-11	43.7	0.0	2.9	2	1	0	3	3	3	2	Cytochrome	C	oxidase	subunit	II,	periplasmic	domain
DUF4430	PF14478.6	gi|345007231|ref|YP_004810083.1|	-	0.035	14.7	0.4	5.5	7.7	0.0	2.5	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4430)
DUF4115	PF13464.6	gi|345007231|ref|YP_004810083.1|	-	0.062	13.5	0.6	0.12	12.6	0.1	1.7	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4115)
MIG-14_Wnt-bd	PF06664.12	gi|345007231|ref|YP_004810083.1|	-	0.094	11.9	0.0	0.13	11.4	0.0	1.1	1	0	0	1	1	1	0	Wnt-binding	factor	required	for	Wnt	secretion
COX1	PF00115.20	gi|345007232|ref|YP_004810084.1|	-	1.9e-106	356.5	68.0	2.3e-106	356.2	68.0	1.0	1	0	0	1	1	1	1	Cytochrome	C	and	Quinol	oxidase	polypeptide	I
DUF3285	PF11688.8	gi|345007232|ref|YP_004810084.1|	-	5	7.1	10.5	11	6.0	3.2	3.0	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3285)
TAT_signal	PF10518.9	gi|345007233|ref|YP_004810085.1|	-	4.1e-05	23.2	0.2	4.1e-05	23.2	0.2	1.9	2	0	0	2	2	2	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
Copper-bind	PF00127.20	gi|345007233|ref|YP_004810085.1|	-	0.021	15.2	0.0	0.052	14.0	0.0	1.7	2	0	0	2	2	2	0	Copper	binding	proteins,	plastocyanin/azurin	family
DDE_Tnp_1	PF01609.21	gi|345007234|ref|YP_004810086.1|	-	6.9e-33	114.1	0.3	9e-33	113.7	0.3	1.2	1	0	0	1	1	1	1	Transposase	DDE	domain
DDE_Tnp_1_4	PF13701.6	gi|345007234|ref|YP_004810086.1|	-	0.0083	14.4	0.1	0.028	12.7	0.0	1.7	1	1	1	2	2	2	1	Transposase	DDE	domain	group	1
Corona_3	PF04694.12	gi|345007234|ref|YP_004810086.1|	-	0.043	14.2	0.0	0.11	12.9	0.0	1.6	1	0	0	1	1	1	0	Coronavirus	ORF3	protein
AAA_16	PF13191.6	gi|345007235|ref|YP_004810087.1|	-	2.3e-07	31.3	0.0	4.7e-06	27.1	0.0	2.6	2	1	0	2	2	2	1	AAA	ATPase	domain
AAA_22	PF13401.6	gi|345007235|ref|YP_004810087.1|	-	3.8e-06	27.2	0.0	1e-05	25.8	0.0	1.7	2	0	0	2	2	2	1	AAA	domain
Bac_DnaA	PF00308.18	gi|345007235|ref|YP_004810087.1|	-	0.0002	21.3	0.9	0.035	13.9	0.1	2.9	1	1	1	2	2	2	1	Bacterial	dnaA	protein
AAA	PF00004.29	gi|345007235|ref|YP_004810087.1|	-	0.00024	21.6	0.0	0.0013	19.2	0.0	2.3	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
ATPase_2	PF01637.18	gi|345007235|ref|YP_004810087.1|	-	0.00028	20.9	0.0	0.0051	16.7	0.0	2.4	2	0	0	2	2	2	1	ATPase	domain	predominantly	from	Archaea
AAA_assoc_2	PF16193.5	gi|345007235|ref|YP_004810087.1|	-	0.00032	21.0	0.1	0.00083	19.6	0.1	1.7	1	0	0	1	1	1	1	AAA	C-terminal	domain
PriX	PF18689.1	gi|345007235|ref|YP_004810087.1|	-	0.011	16.0	0.0	0.028	14.7	0.0	1.6	1	0	0	1	1	1	0	Primase	X
Cdc6_C	PF09079.11	gi|345007235|ref|YP_004810087.1|	-	0.026	14.5	0.0	0.067	13.2	0.0	1.7	1	0	0	1	1	1	0	CDC6,	C	terminal	winged	helix	domain
AAA_5	PF07728.14	gi|345007235|ref|YP_004810087.1|	-	0.026	14.5	0.0	0.18	11.8	0.0	2.3	2	1	0	2	2	2	0	AAA	domain	(dynein-related	subfamily)
NB-ARC	PF00931.22	gi|345007235|ref|YP_004810087.1|	-	0.061	12.5	0.0	0.19	10.9	0.0	1.8	1	1	1	2	2	2	0	NB-ARC	domain
RNA_helicase	PF00910.22	gi|345007235|ref|YP_004810087.1|	-	0.09	13.2	0.0	0.91	9.9	0.0	2.6	2	1	0	2	2	2	0	RNA	helicase
PhoH	PF02562.16	gi|345007235|ref|YP_004810087.1|	-	0.11	12.0	0.0	7.3	6.0	0.0	2.4	2	0	0	2	2	2	0	PhoH-like	protein
NOG1_N	PF17835.1	gi|345007236|ref|YP_004810088.1|	-	0.024	14.6	0.1	0.031	14.2	0.1	1.2	1	0	0	1	1	1	0	NOG1	N-terminal	helical	domain
DUF2779	PF11074.8	gi|345007236|ref|YP_004810088.1|	-	0.038	14.5	0.2	0.053	14.0	0.2	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function(DUF2779)
HBB	PF06777.11	gi|345007236|ref|YP_004810088.1|	-	0.12	12.1	0.3	0.15	11.8	0.3	1.1	1	0	0	1	1	1	0	Helical	and	beta-bridge	domain
MarR_2	PF12802.7	gi|345007237|ref|YP_004810089.1|	-	1.7e-08	34.2	0.0	2.7e-08	33.6	0.0	1.3	1	0	0	1	1	1	1	MarR	family
MarR	PF01047.22	gi|345007237|ref|YP_004810089.1|	-	0.0069	16.3	0.0	0.012	15.5	0.0	1.4	1	0	0	1	1	1	1	MarR	family
DUF484	PF04340.12	gi|345007237|ref|YP_004810089.1|	-	0.031	14.0	0.0	0.063	13.0	0.0	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function,	DUF484
HTH_24	PF13412.6	gi|345007237|ref|YP_004810089.1|	-	0.033	13.8	0.0	0.12	12.0	0.0	1.9	1	1	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
RPA_C	PF08784.11	gi|345007237|ref|YP_004810089.1|	-	0.072	13.8	0.0	0.096	13.3	0.0	1.2	1	0	0	1	1	1	0	Replication	protein	A	C	terminal
PDDEXK_1	PF12705.7	gi|345007238|ref|YP_004810090.1|	-	2.4e-08	34.2	0.0	3.1e-08	33.9	0.0	1.2	1	0	0	1	1	1	1	PD-(D/E)XK	nuclease	superfamily
Cas_Cas4	PF01930.17	gi|345007238|ref|YP_004810090.1|	-	3.4e-08	33.8	0.0	5.5e-08	33.1	0.0	1.3	1	0	0	1	1	1	1	Domain	of	unknown	function	DUF83
PDDEXK_9	PF08011.11	gi|345007238|ref|YP_004810090.1|	-	0.013	15.4	0.0	0.027	14.4	0.0	1.4	1	0	0	1	1	1	0	PD-(D/E)XK	nuclease	superfamily
zf-RanBP	PF00641.18	gi|345007238|ref|YP_004810090.1|	-	2.5	7.5	5.3	7.4	6.0	0.4	2.8	2	0	0	2	2	2	0	Zn-finger	in	Ran	binding	protein	and	others
Vps36-NZF-N	PF16988.5	gi|345007238|ref|YP_004810090.1|	-	4.7	6.7	5.3	9.5	5.7	2.0	2.4	2	0	0	2	2	2	0	Vacuolar	protein	sorting	36	NZF-N	zinc-finger	domain
Zn_Tnp_IS1595	PF12760.7	gi|345007238|ref|YP_004810090.1|	-	4.7	7.3	7.4	33	4.6	0.5	3.5	2	1	1	3	3	3	0	Transposase	zinc-ribbon	domain
MarR_2	PF12802.7	gi|345007239|ref|YP_004810091.1|	-	0.036	14.0	0.0	0.064	13.1	0.0	1.4	1	0	0	1	1	1	0	MarR	family
HxlR	PF01638.17	gi|345007239|ref|YP_004810091.1|	-	0.064	13.1	0.0	0.098	12.5	0.0	1.3	1	0	0	1	1	1	0	HxlR-like	helix-turn-helix
Glyco_trans_4_5	PF16994.5	gi|345007239|ref|YP_004810091.1|	-	0.076	12.6	0.0	0.12	12.0	0.0	1.4	1	1	0	1	1	1	0	Glycosyl-transferase	family	4
DDE_Tnp_1	PF01609.21	gi|345007240|ref|YP_004810092.1|	-	1.9e-06	27.7	0.1	3.8e-06	26.7	0.1	1.4	1	0	0	1	1	1	1	Transposase	DDE	domain
DUF772	PF05598.11	gi|345007240|ref|YP_004810092.1|	-	0.00021	21.3	0.1	0.00087	19.3	0.1	2.1	1	0	0	1	1	1	1	Transposase	domain	(DUF772)
DDE_Tnp_1_4	PF13701.6	gi|345007240|ref|YP_004810092.1|	-	0.0058	14.9	0.0	1.3	7.2	0.0	2.2	2	0	0	2	2	2	2	Transposase	DDE	domain	group	1
AAA_21	PF13304.6	gi|345007241|ref|YP_004810093.1|	-	3.7e-12	46.7	3.1	2.9e-05	24.1	0.2	3.2	2	1	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_15	PF13175.6	gi|345007241|ref|YP_004810093.1|	-	4.5e-08	33.2	4.5	1.3e-05	25.1	0.0	3.3	3	1	0	3	3	3	2	AAA	ATPase	domain
ABC_tran	PF00005.27	gi|345007241|ref|YP_004810093.1|	-	5.2e-07	30.2	0.2	0.1	13.1	0.0	3.8	3	0	0	3	3	3	2	ABC	transporter
SMC_N	PF02463.19	gi|345007241|ref|YP_004810093.1|	-	7.5e-07	28.8	7.9	0.0045	16.5	0.0	2.4	2	1	0	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
AAA_29	PF13555.6	gi|345007241|ref|YP_004810093.1|	-	2.7e-05	23.8	0.0	5.2e-05	22.9	0.0	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_23	PF13476.6	gi|345007241|ref|YP_004810093.1|	-	0.00021	21.9	29.7	0.0012	19.4	20.6	4.6	3	1	0	3	3	3	1	AAA	domain
Baculo_PEP_C	PF04513.12	gi|345007241|ref|YP_004810093.1|	-	0.0017	18.4	3.1	0.39	10.8	0.0	4.0	4	0	0	4	4	4	1	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
AAA_16	PF13191.6	gi|345007241|ref|YP_004810093.1|	-	0.0067	16.8	0.9	0.16	12.4	0.0	3.4	2	1	0	2	2	2	1	AAA	ATPase	domain
AAA_22	PF13401.6	gi|345007241|ref|YP_004810093.1|	-	0.0074	16.6	0.7	0.079	13.2	0.0	3.0	3	1	0	3	3	3	1	AAA	domain
AAA_25	PF13481.6	gi|345007241|ref|YP_004810093.1|	-	0.011	15.3	4.4	0.44	10.1	0.0	3.6	4	0	0	4	4	4	0	AAA	domain
AAA_27	PF13514.6	gi|345007241|ref|YP_004810093.1|	-	0.011	15.3	0.0	0.011	15.3	0.0	2.5	3	0	0	3	3	2	0	AAA	domain
DUF1664	PF07889.12	gi|345007241|ref|YP_004810093.1|	-	0.012	15.7	13.1	0.84	9.7	0.0	5.3	4	1	1	5	5	5	0	Protein	of	unknown	function	(DUF1664)
SbcCD_C	PF13558.6	gi|345007241|ref|YP_004810093.1|	-	0.017	15.3	0.0	0.05	13.8	0.0	1.8	1	0	0	1	1	1	0	Putative	exonuclease	SbcCD,	C	subunit
Bac_DNA_binding	PF00216.21	gi|345007241|ref|YP_004810093.1|	-	0.032	14.4	1.0	12	6.2	0.0	2.9	3	0	0	3	3	2	0	Bacterial	DNA-binding	protein
AAA	PF00004.29	gi|345007241|ref|YP_004810093.1|	-	0.053	13.9	0.5	0.36	11.3	0.5	2.5	1	0	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
ZapB	PF06005.12	gi|345007241|ref|YP_004810093.1|	-	0.054	13.9	0.1	0.054	13.9	0.1	4.9	5	1	0	5	5	3	0	Cell	division	protein	ZapB
Img2	PF05046.14	gi|345007241|ref|YP_004810093.1|	-	0.055	13.8	0.0	0.31	11.4	0.0	2.3	2	0	0	2	2	1	0	Mitochondrial	large	subunit	ribosomal	protein	(Img2)
AAA_13	PF13166.6	gi|345007241|ref|YP_004810093.1|	-	0.065	11.9	13.4	0.46	9.1	0.0	4.5	5	0	0	5	5	5	0	AAA	domain
DUF5082	PF16888.5	gi|345007241|ref|YP_004810093.1|	-	0.071	13.4	13.3	0.55	10.5	0.7	4.4	4	1	0	4	4	4	0	Domain	of	unknown	function	(DUF5082)
RuvB_N	PF05496.12	gi|345007241|ref|YP_004810093.1|	-	0.074	12.8	0.0	0.16	11.7	0.0	1.4	1	0	0	1	1	1	0	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
Atg14	PF10186.9	gi|345007241|ref|YP_004810093.1|	-	0.12	11.5	10.5	4.6	6.2	0.3	3.4	3	0	0	3	3	3	0	Vacuolar	sorting	38	and	autophagy-related	subunit	14
DUF3450	PF11932.8	gi|345007241|ref|YP_004810093.1|	-	0.2	10.9	0.0	0.2	10.9	0.0	3.7	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF3450)
ApoLp-III	PF07464.11	gi|345007241|ref|YP_004810093.1|	-	0.22	11.6	8.4	0.75	9.9	0.1	3.8	4	0	0	4	4	3	0	Apolipophorin-III	precursor	(apoLp-III)
AAA_11	PF13086.6	gi|345007241|ref|YP_004810093.1|	-	0.3	10.9	13.7	61	3.3	0.1	4.1	2	1	0	2	2	2	0	AAA	domain
DUF4795	PF16043.5	gi|345007241|ref|YP_004810093.1|	-	0.37	10.4	18.7	0.064	12.8	0.7	3.2	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF4795)
Cluap1	PF10234.9	gi|345007241|ref|YP_004810093.1|	-	0.94	8.8	17.1	0.068	12.6	0.3	4.2	4	1	0	4	4	4	0	Clusterin-associated	protein-1
DUF16	PF01519.16	gi|345007241|ref|YP_004810093.1|	-	0.96	10.0	11.4	4.1	8.0	0.7	4.4	3	1	0	3	3	3	0	Protein	of	unknown	function	DUF16
T3SSipB	PF16535.5	gi|345007241|ref|YP_004810093.1|	-	1	9.8	3.6	9	6.8	0.0	3.4	4	0	0	4	4	3	0	Type	III	cell	invasion	protein	SipB
Snapin_Pallidin	PF14712.6	gi|345007241|ref|YP_004810093.1|	-	1.4	9.4	12.0	16	6.0	0.5	5.3	4	1	1	5	5	5	0	Snapin/Pallidin
Prefoldin_2	PF01920.20	gi|345007241|ref|YP_004810093.1|	-	3.3	7.7	22.3	1.8	8.6	2.6	5.1	5	1	0	5	5	5	0	Prefoldin	subunit
TMF_TATA_bd	PF12325.8	gi|345007241|ref|YP_004810093.1|	-	4.1	7.7	22.1	0.17	12.1	0.3	4.5	4	0	0	4	4	3	0	TATA	element	modulatory	factor	1	TATA	binding
Jnk-SapK_ap_N	PF09744.9	gi|345007241|ref|YP_004810093.1|	-	5.6	7.2	28.7	0.087	13.0	0.4	4.5	4	1	0	4	4	4	0	JNK_SAPK-associated	protein-1
PDDEXK_9	PF08011.11	gi|345007245|ref|YP_004810097.1|	-	0.026	14.4	0.0	0.056	13.3	0.0	1.5	1	0	0	1	1	1	0	PD-(D/E)XK	nuclease	superfamily
MmcB-like	PF06319.12	gi|345007245|ref|YP_004810097.1|	-	0.046	13.4	0.0	0.11	12.2	0.0	1.6	1	0	0	1	1	1	0	DNA	repair	protein	MmcB-like
HATPase_c_3	PF13589.6	gi|345007246|ref|YP_004810098.1|	-	6.1e-05	22.9	0.0	0.00013	21.8	0.0	1.6	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HNH	PF01844.23	gi|345007250|ref|YP_004810102.1|	-	3.1e-11	43.2	5.5	7.1e-11	42.1	5.5	1.6	1	0	0	1	1	1	1	HNH	endonuclease
HNH_5	PF14279.6	gi|345007250|ref|YP_004810102.1|	-	1.7e-05	24.6	4.8	0.00014	21.7	4.6	2.4	1	1	1	2	2	2	1	HNH	endonuclease
Cytochrome_C7	PF14522.6	gi|345007250|ref|YP_004810102.1|	-	0.089	12.8	5.6	0.15	12.1	5.6	1.3	1	0	0	1	1	1	0	Cytochrome	c7	and	related	cytochrome	c
Zn_ribbon_SprT	PF17283.2	gi|345007250|ref|YP_004810102.1|	-	0.26	11.2	6.7	0.14	12.1	3.1	2.2	2	0	0	2	2	2	0	SprT-like	zinc	ribbon	domain
Zn-ribbon_8	PF09723.10	gi|345007250|ref|YP_004810102.1|	-	4.8	7.4	5.1	72	3.6	5.1	2.2	1	1	0	1	1	1	0	Zinc	ribbon	domain
DDE_Tnp_1	PF01609.21	gi|345007251|ref|YP_004810103.1|	-	6.9e-33	114.1	0.3	9e-33	113.7	0.3	1.2	1	0	0	1	1	1	1	Transposase	DDE	domain
DDE_Tnp_1_4	PF13701.6	gi|345007251|ref|YP_004810103.1|	-	0.0083	14.4	0.1	0.028	12.7	0.0	1.7	1	1	1	2	2	2	1	Transposase	DDE	domain	group	1
Corona_3	PF04694.12	gi|345007251|ref|YP_004810103.1|	-	0.043	14.2	0.0	0.11	12.9	0.0	1.6	1	0	0	1	1	1	0	Coronavirus	ORF3	protein
PGF-CTERM	PF18204.1	gi|345007252|ref|YP_004810104.1|	-	8.2e-05	22.4	2.7	0.00023	21.0	2.7	1.8	1	0	0	1	1	1	1	PGF-CTERM	motif
CENP-B_dimeris	PF09026.10	gi|345007252|ref|YP_004810104.1|	-	0.014	15.7	0.3	0.033	14.6	0.3	1.6	1	0	0	1	1	1	0	Centromere	protein	B	dimerisation	domain
DUF1616	PF07760.11	gi|345007252|ref|YP_004810104.1|	-	0.074	12.4	11.0	0.11	11.9	5.5	2.7	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF1616)
Big_7	PF17957.1	gi|345007252|ref|YP_004810104.1|	-	1.6	9.5	11.4	0.37	11.6	6.6	2.5	2	1	0	2	2	2	0	Bacterial	Ig	domain
BACON	PF13004.7	gi|345007252|ref|YP_004810104.1|	-	3.3	7.8	7.8	2	8.5	0.1	3.0	2	1	0	2	2	2	0	Putative	binding	domain,	N-terminal
DUF4179	PF13786.6	gi|345007252|ref|YP_004810104.1|	-	7.1	7.2	8.0	0.19	12.2	1.0	2.1	2	1	0	2	2	2	0	Domain	of	unknown	function	(DUF4179)
BatA	PF07584.11	gi|345007253|ref|YP_004810105.1|	-	0.024	15.0	0.2	0.33	11.3	0.0	2.0	2	0	0	2	2	2	0	Aerotolerance	regulator	N-terminal
DUF3043	PF11241.8	gi|345007253|ref|YP_004810105.1|	-	0.1	12.6	1.0	0.13	12.3	1.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3043)
ParE_toxin	PF05016.15	gi|345007256|ref|YP_004810108.1|	-	0.043	14.4	0.3	0.091	13.4	0.3	1.5	1	1	0	1	1	1	0	ParE	toxin	of	type	II	toxin-antitoxin	system,	parDE
RHH_1	PF01402.21	gi|345007257|ref|YP_004810109.1|	-	0.0027	17.6	0.0	0.0046	16.8	0.0	1.4	1	0	0	1	1	1	1	Ribbon-helix-helix	protein,	copG	family
RHH_8	PF17723.1	gi|345007257|ref|YP_004810109.1|	-	0.033	14.4	0.1	0.042	14.0	0.1	1.2	1	1	0	1	1	1	0	Ribbon-Helix-Helix	transcriptional	regulator	family
SHOCT	PF09851.9	gi|345007259|ref|YP_004810111.1|	-	0.078	12.7	0.2	0.078	12.7	0.2	2.7	4	0	0	4	4	4	0	Short	C-terminal	domain
ZapD	PF07072.11	gi|345007260|ref|YP_004810112.1|	-	0.11	12.2	0.0	0.3	10.8	0.0	1.6	2	0	0	2	2	2	0	Cell	division	protein
AAA_31	PF13614.6	gi|345007261|ref|YP_004810113.1|	-	1.2e-28	100.2	0.0	1.8e-28	99.7	0.0	1.1	1	0	0	1	1	1	1	AAA	domain
CbiA	PF01656.23	gi|345007261|ref|YP_004810113.1|	-	5.7e-11	42.6	0.0	1.3e-10	41.5	0.0	1.6	1	1	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
ParA	PF10609.9	gi|345007261|ref|YP_004810113.1|	-	2.5e-08	33.7	0.3	1.8e-07	30.8	0.1	2.0	2	0	0	2	2	2	1	NUBPL	iron-transfer	P-loop	NTPase
MipZ	PF09140.11	gi|345007261|ref|YP_004810113.1|	-	1.2e-07	31.3	0.2	8.5e-05	22.0	0.3	3.0	2	1	0	2	2	2	1	ATPase	MipZ
CBP_BcsQ	PF06564.12	gi|345007261|ref|YP_004810113.1|	-	1.1e-06	28.3	0.0	2e-06	27.5	0.0	1.3	1	0	0	1	1	1	1	Cellulose	biosynthesis	protein	BcsQ
ArsA_ATPase	PF02374.15	gi|345007261|ref|YP_004810113.1|	-	0.00018	20.8	0.0	0.0019	17.4	0.0	2.3	3	0	0	3	3	3	1	Anion-transporting	ATPase
VirC1	PF07015.11	gi|345007261|ref|YP_004810113.1|	-	0.0026	17.1	0.0	0.79	9.0	0.0	2.2	2	0	0	2	2	2	2	VirC1	protein
Fer4_NifH	PF00142.18	gi|345007261|ref|YP_004810113.1|	-	0.0087	15.5	0.0	0.29	10.5	0.0	2.3	2	0	0	2	2	2	1	4Fe-4S	iron	sulfur	cluster	binding	proteins,	NifH/frxC	family
CLP1_P	PF16575.5	gi|345007261|ref|YP_004810113.1|	-	0.012	15.4	0.1	0.032	14.0	0.0	1.7	2	0	0	2	2	2	0	mRNA	cleavage	and	polyadenylation	factor	CLP1	P-loop
APS_kinase	PF01583.20	gi|345007261|ref|YP_004810113.1|	-	0.012	15.5	0.1	0.026	14.4	0.1	1.5	1	0	0	1	1	1	0	Adenylylsulphate	kinase
Glyco_transf_4	PF13439.6	gi|345007261|ref|YP_004810113.1|	-	0.087	12.8	0.0	2.1	8.3	0.0	2.1	2	0	0	2	2	2	0	Glycosyltransferase	Family	4
SRP54	PF00448.22	gi|345007261|ref|YP_004810113.1|	-	0.12	12.0	0.1	4.4	6.9	0.0	2.4	2	0	0	2	2	2	0	SRP54-type	protein,	GTPase	domain
HTH_23	PF13384.6	gi|345007262|ref|YP_004810114.1|	-	3.8e-05	23.3	0.2	0.00016	21.3	0.0	2.1	2	0	0	2	2	2	1	Homeodomain-like	domain
MarR_2	PF12802.7	gi|345007262|ref|YP_004810114.1|	-	0.00035	20.4	0.2	0.00083	19.2	0.1	1.7	1	1	1	2	2	2	1	MarR	family
HTH_28	PF13518.6	gi|345007262|ref|YP_004810114.1|	-	0.00042	20.4	1.7	0.00068	19.7	0.0	2.3	3	0	0	3	3	2	1	Helix-turn-helix	domain
HTH_1	PF00126.27	gi|345007262|ref|YP_004810114.1|	-	0.00075	19.4	0.6	0.0019	18.1	0.1	1.9	2	0	0	2	2	2	1	Bacterial	regulatory	helix-turn-helix	protein,	lysR	family
Fe_dep_repress	PF01325.19	gi|345007262|ref|YP_004810114.1|	-	0.0016	18.6	0.0	0.011	15.9	0.0	2.1	2	0	0	2	2	2	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
Rrf2	PF02082.20	gi|345007262|ref|YP_004810114.1|	-	0.0043	17.4	0.0	0.052	13.9	0.0	2.3	2	0	0	2	2	2	1	Transcriptional	regulator
GntR	PF00392.21	gi|345007262|ref|YP_004810114.1|	-	0.0044	16.6	0.1	0.017	14.8	0.0	1.9	2	0	0	2	2	2	1	Bacterial	regulatory	proteins,	gntR	family
TrmB	PF01978.19	gi|345007262|ref|YP_004810114.1|	-	0.0061	16.4	0.0	0.013	15.4	0.0	1.5	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_24	PF13412.6	gi|345007262|ref|YP_004810114.1|	-	0.0077	15.8	0.0	0.015	14.8	0.0	1.5	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_Crp_2	PF13545.6	gi|345007262|ref|YP_004810114.1|	-	0.01	15.8	0.1	0.034	14.1	0.0	1.8	2	0	0	2	2	2	0	Crp-like	helix-turn-helix	domain
RPA_C	PF08784.11	gi|345007262|ref|YP_004810114.1|	-	0.016	15.9	0.0	0.029	15.0	0.0	1.5	1	0	0	1	1	1	0	Replication	protein	A	C	terminal
HTH_30	PF13556.6	gi|345007262|ref|YP_004810114.1|	-	0.028	14.2	0.1	0.055	13.3	0.1	1.5	1	0	0	1	1	1	0	PucR	C-terminal	helix-turn-helix	domain
DUF2250	PF10007.9	gi|345007262|ref|YP_004810114.1|	-	0.041	14.0	0.0	0.069	13.3	0.0	1.3	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
HTH_Tnp_ISL3	PF13542.6	gi|345007262|ref|YP_004810114.1|	-	0.11	11.9	0.1	0.41	10.1	0.1	1.9	2	0	0	2	2	2	0	Helix-turn-helix	domain	of	transposase	family	ISL3
LPD11	PF18824.1	gi|345007262|ref|YP_004810114.1|	-	0.41	10.8	1.9	18	5.5	0.4	2.4	1	1	1	2	2	2	0	Large	polyvalent	protein-associated	domain	11
DNA_methylase	PF00145.17	gi|345007263|ref|YP_004810115.1|	-	3.5e-61	207.4	0.0	5.2e-61	206.8	0.0	1.2	1	0	0	1	1	1	1	C-5	cytosine-specific	DNA	methylase
Methyltransf_15	PF09445.10	gi|345007263|ref|YP_004810115.1|	-	0.0044	16.6	0.0	0.0083	15.7	0.0	1.4	1	0	0	1	1	1	1	RNA	cap	guanine-N2	methyltransferase
MTS	PF05175.14	gi|345007263|ref|YP_004810115.1|	-	0.011	15.3	0.0	0.019	14.6	0.0	1.2	1	0	0	1	1	1	0	Methyltransferase	small	domain
Met_10	PF02475.16	gi|345007263|ref|YP_004810115.1|	-	0.13	12.0	0.0	0.2	11.4	0.0	1.2	1	0	0	1	1	1	0	Met-10+	like-protein
PSRT	PF07636.11	gi|345007263|ref|YP_004810115.1|	-	0.37	10.5	1.4	0.86	9.3	1.4	1.5	1	0	0	1	1	1	0	PSRT
Helicase_C	PF00271.31	gi|345007266|ref|YP_004810118.1|	-	1e-07	32.3	0.0	1.8e-07	31.4	0.0	1.4	1	0	0	1	1	1	1	Helicase	conserved	C-terminal	domain
DEAD	PF00270.29	gi|345007266|ref|YP_004810118.1|	-	0.00016	21.5	0.0	0.13	12.0	0.0	2.3	2	0	0	2	2	2	2	DEAD/DEAH	box	helicase
Nudix_N_2	PF14803.6	gi|345007266|ref|YP_004810118.1|	-	0.049	13.5	2.6	0.11	12.4	2.6	1.6	1	0	0	1	1	1	0	Nudix	N-terminal
zf_PR_Knuckle	PF18445.1	gi|345007267|ref|YP_004810119.1|	-	0.31	10.9	1.3	1.8	8.4	0.1	2.4	2	0	0	2	2	2	0	PR	zinc	knuckle	motif
PLDc_2	PF13091.6	gi|345007268|ref|YP_004810120.1|	-	5e-13	49.1	0.0	1e-12	48.1	0.0	1.5	1	1	0	1	1	1	1	PLD-like	domain
PLDc	PF00614.22	gi|345007268|ref|YP_004810120.1|	-	1.9e-05	24.6	0.0	6.7e-05	22.9	0.0	1.8	1	0	0	1	1	1	1	Phospholipase	D	Active	site	motif
MarR_2	PF12802.7	gi|345007268|ref|YP_004810120.1|	-	0.052	13.4	0.3	0.15	12.0	0.3	1.8	1	0	0	1	1	1	0	MarR	family
Eco57I	PF07669.11	gi|345007269|ref|YP_004810121.1|	-	2e-16	60.4	0.0	7.3e-16	58.6	0.0	2.0	1	0	0	1	1	1	1	Eco57I	restriction-modification	methylase
TaqI_C	PF12950.7	gi|345007269|ref|YP_004810121.1|	-	6.5e-15	55.3	0.1	1.4e-14	54.1	0.1	1.6	1	0	0	1	1	1	1	TaqI-like	C-terminal	specificity	domain
N6_Mtase	PF02384.16	gi|345007269|ref|YP_004810121.1|	-	3.6e-09	36.3	0.0	0.0018	17.6	0.0	2.9	2	1	0	2	2	2	2	N-6	DNA	Methylase
Cofac_haem_bdg	PF04187.13	gi|345007269|ref|YP_004810121.1|	-	0.021	14.8	1.3	0.05	13.6	1.3	1.6	1	0	0	1	1	1	0	Haem-binding	uptake,	Tiki	superfamily,	ChaN
HSDR_N_2	PF13588.6	gi|345007269|ref|YP_004810121.1|	-	0.041	13.9	0.0	0.1	12.6	0.0	1.7	1	0	0	1	1	1	0	Type	I	restriction	enzyme	R	protein	N	terminus	(HSDR_N)
RE_AspBHI_N	PF18062.1	gi|345007270|ref|YP_004810122.1|	-	2.8e-53	180.2	0.0	3.7e-53	179.8	0.0	1.1	1	0	0	1	1	1	1	Restriction	endonuclease	AspBHI	N-terminal
HNH_2	PF13391.6	gi|345007270|ref|YP_004810122.1|	-	3.1e-07	30.4	0.2	9.3e-07	28.9	0.2	1.9	1	1	0	1	1	1	1	HNH	endonuclease
HTH_20	PF12840.7	gi|345007272|ref|YP_004810124.1|	-	6.1e-05	23.0	0.0	0.0001	22.2	0.0	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_5	PF01022.20	gi|345007272|ref|YP_004810124.1|	-	0.0028	17.5	0.0	0.0042	16.9	0.0	1.3	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
YnfE	PF17452.2	gi|345007272|ref|YP_004810124.1|	-	0.0042	17.3	0.3	0.54	10.6	0.2	2.2	2	0	0	2	2	2	1	Uncharacterized	YnfE-like
TrmB	PF01978.19	gi|345007272|ref|YP_004810124.1|	-	0.0069	16.2	0.0	0.011	15.6	0.0	1.3	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
MarR_2	PF12802.7	gi|345007272|ref|YP_004810124.1|	-	0.01	15.7	0.0	0.026	14.4	0.0	1.7	1	0	0	1	1	1	0	MarR	family
MarR	PF01047.22	gi|345007272|ref|YP_004810124.1|	-	0.034	14.1	0.0	0.075	13.0	0.0	1.6	1	0	0	1	1	1	0	MarR	family
CSN8_PSD8_EIF3K	PF10075.9	gi|345007272|ref|YP_004810124.1|	-	0.13	12.2	0.0	0.24	11.4	0.0	1.4	1	0	0	1	1	1	0	CSN8/PSMD8/EIF3K	family
DUF1275	PF06912.11	gi|345007274|ref|YP_004810126.1|	-	0.14	12.1	0.7	0.22	11.4	0.7	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1275)
CPP1-like	PF11833.8	gi|345007274|ref|YP_004810126.1|	-	0.33	10.6	1.2	0.55	9.9	1.2	1.3	1	0	0	1	1	1	0	Protein	CHAPERONE-LIKE	PROTEIN	OF	POR1-like
Helicase_C	PF00271.31	gi|345007275|ref|YP_004810127.1|	-	2.7e-23	82.4	0.0	8e-23	80.9	0.0	1.8	1	0	0	1	1	1	1	Helicase	conserved	C-terminal	domain
SNF2_N	PF00176.23	gi|345007275|ref|YP_004810127.1|	-	6.4e-18	64.6	0.0	5e-16	58.4	0.0	2.2	1	1	0	1	1	1	1	SNF2	family	N-terminal	domain
ResIII	PF04851.15	gi|345007275|ref|YP_004810127.1|	-	7.9e-12	45.5	0.0	2.2e-11	44.1	0.0	1.8	1	0	0	1	1	1	1	Type	III	restriction	enzyme,	res	subunit
RapA_C	PF12137.8	gi|345007275|ref|YP_004810127.1|	-	1.2e-06	27.8	2.4	8.9e-06	25.0	0.0	2.5	2	0	0	2	2	2	1	RNA	polymerase	recycling	family	C-terminal
AAA_34	PF13872.6	gi|345007275|ref|YP_004810127.1|	-	0.0099	14.8	0.1	0.024	13.5	0.1	1.6	1	1	0	1	1	1	1	P-loop	containing	NTP	hydrolase	pore-1
RuvB_N	PF05496.12	gi|345007275|ref|YP_004810127.1|	-	0.055	13.2	0.2	0.84	9.4	0.0	2.4	2	0	0	2	2	2	0	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
DNA_methylase	PF00145.17	gi|345007276|ref|YP_004810128.1|	-	1.9e-59	201.7	0.0	1.3e-29	103.7	0.0	2.3	2	1	0	2	2	2	2	C-5	cytosine-specific	DNA	methylase
MTS	PF05175.14	gi|345007276|ref|YP_004810128.1|	-	0.00018	21.1	0.0	0.00042	19.9	0.0	1.5	2	0	0	2	2	2	1	Methyltransferase	small	domain
Methyltransf_25	PF13649.6	gi|345007276|ref|YP_004810128.1|	-	0.046	14.4	0.0	0.087	13.5	0.0	1.4	1	0	0	1	1	1	0	Methyltransferase	domain
PrmA	PF06325.13	gi|345007276|ref|YP_004810128.1|	-	0.055	12.9	0.0	0.11	11.9	0.0	1.5	1	0	0	1	1	1	0	Ribosomal	protein	L11	methyltransferase	(PrmA)
Methyltransf_15	PF09445.10	gi|345007276|ref|YP_004810128.1|	-	0.24	10.9	0.0	0.37	10.3	0.0	1.2	1	0	0	1	1	1	0	RNA	cap	guanine-N2	methyltransferase
DUF4944	PF16302.5	gi|345007277|ref|YP_004810129.1|	-	0.04	14.0	0.5	0.089	12.9	0.2	1.8	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4944)
Ntox5	PF15543.6	gi|345007277|ref|YP_004810129.1|	-	0.14	12.0	0.0	0.22	11.4	0.0	1.3	1	0	0	1	1	1	0	Bacterial	toxin	5
DDE_Tnp_1	PF01609.21	gi|345007280|ref|YP_004810132.1|	-	0.031	13.9	0.1	0.085	12.5	0.1	1.7	1	1	0	1	1	1	0	Transposase	DDE	domain
Cdc6_C	PF09079.11	gi|345007281|ref|YP_004810133.1|	-	8.2e-13	48.1	0.0	3.3e-12	46.2	0.0	2.1	3	0	0	3	3	1	1	CDC6,	C	terminal	winged	helix	domain
AAA	PF00004.29	gi|345007281|ref|YP_004810133.1|	-	1.2e-10	41.9	0.0	3.5e-10	40.4	0.0	1.8	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_16	PF13191.6	gi|345007281|ref|YP_004810133.1|	-	2.2e-10	41.2	0.0	7.6e-10	39.4	0.0	1.9	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_22	PF13401.6	gi|345007281|ref|YP_004810133.1|	-	1.4e-07	31.9	0.0	3.7e-07	30.5	0.0	1.7	1	0	0	1	1	1	1	AAA	domain
DUF815	PF05673.13	gi|345007281|ref|YP_004810133.1|	-	4e-06	26.2	0.0	8.8e-06	25.1	0.0	1.5	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF815)
ATPase_2	PF01637.18	gi|345007281|ref|YP_004810133.1|	-	6.7e-05	22.9	0.0	0.00017	21.6	0.0	1.7	1	0	0	1	1	1	1	ATPase	domain	predominantly	from	Archaea
TniB	PF05621.11	gi|345007281|ref|YP_004810133.1|	-	0.00025	20.5	0.0	0.00044	19.7	0.0	1.3	1	0	0	1	1	1	1	Bacterial	TniB	protein
NACHT	PF05729.12	gi|345007281|ref|YP_004810133.1|	-	0.00097	19.1	0.0	0.0019	18.1	0.0	1.4	1	0	0	1	1	1	1	NACHT	domain
Sigma54_activat	PF00158.26	gi|345007281|ref|YP_004810133.1|	-	0.019	14.7	0.0	0.033	13.9	0.0	1.4	1	0	0	1	1	1	0	Sigma-54	interaction	domain
AAA_7	PF12775.7	gi|345007281|ref|YP_004810133.1|	-	0.031	13.8	0.0	0.13	11.7	0.0	1.9	2	0	0	2	2	2	0	P-loop	containing	dynein	motor	region
AAA_30	PF13604.6	gi|345007281|ref|YP_004810133.1|	-	0.06	13.1	0.6	0.19	11.5	0.1	2.1	2	1	0	2	2	2	0	AAA	domain
IstB_IS21	PF01695.17	gi|345007281|ref|YP_004810133.1|	-	0.086	12.6	0.1	0.61	9.8	0.0	2.3	3	0	0	3	3	3	0	IstB-like	ATP	binding	protein
Mg_chelatase	PF01078.21	gi|345007281|ref|YP_004810133.1|	-	0.087	12.2	0.0	0.26	10.6	0.0	1.7	2	0	0	2	2	2	0	Magnesium	chelatase,	subunit	ChlI
AAA_29	PF13555.6	gi|345007281|ref|YP_004810133.1|	-	0.098	12.4	0.0	0.23	11.2	0.0	1.5	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
FTCD_N	PF07837.12	gi|345007281|ref|YP_004810133.1|	-	0.14	11.9	0.0	0.33	10.7	0.0	1.5	1	0	0	1	1	1	0	Formiminotransferase	domain,	N-terminal	subdomain
AAA_assoc_2	PF16193.5	gi|345007281|ref|YP_004810133.1|	-	0.18	12.1	1.2	1	9.7	0.1	2.7	2	1	0	2	2	2	0	AAA	C-terminal	domain
SWIM	PF04434.17	gi|345007283|ref|YP_004810135.1|	-	0.015	15.0	0.6	0.046	13.4	0.6	1.9	1	1	0	1	1	1	0	SWIM	zinc	finger
Peptidase_M78	PF06114.13	gi|345007284|ref|YP_004810136.1|	-	5.2e-06	26.4	0.0	9.2e-06	25.6	0.0	1.4	1	0	0	1	1	1	1	IrrE	N-terminal-like	domain
Amidase	PF01425.21	gi|345007284|ref|YP_004810136.1|	-	0.021	13.8	0.0	0.033	13.2	0.0	1.3	1	0	0	1	1	1	0	Amidase
SprT-like	PF10263.9	gi|345007284|ref|YP_004810136.1|	-	0.022	14.6	0.0	0.063	13.1	0.0	1.8	1	1	0	1	1	1	0	SprT-like	family
DUF2268	PF10026.9	gi|345007284|ref|YP_004810136.1|	-	0.054	13.1	0.0	0.13	11.9	0.0	1.5	1	0	0	1	1	1	0	Predicted	Zn-dependent	protease	(DUF2268)
OGG_N	PF07934.12	gi|345007284|ref|YP_004810136.1|	-	0.073	13.2	0.0	0.12	12.5	0.0	1.5	1	0	0	1	1	1	0	8-oxoguanine	DNA	glycosylase,	N-terminal	domain
AAA	PF00004.29	gi|345007289|ref|YP_004810141.1|	-	3e-42	144.2	0.0	5.1e-42	143.4	0.0	1.4	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_lid_3	PF17862.1	gi|345007289|ref|YP_004810141.1|	-	5.4e-16	58.1	0.3	1.6e-15	56.6	0.3	1.9	1	1	0	1	1	1	1	AAA+	lid	domain
AAA_25	PF13481.6	gi|345007289|ref|YP_004810141.1|	-	3.4e-07	30.0	1.6	0.002	17.7	0.3	2.3	1	1	1	2	2	2	2	AAA	domain
AAA_16	PF13191.6	gi|345007289|ref|YP_004810141.1|	-	7.7e-07	29.6	0.6	0.06	13.7	0.0	2.5	1	1	1	2	2	2	2	AAA	ATPase	domain
AAA_2	PF07724.14	gi|345007289|ref|YP_004810141.1|	-	8.4e-06	26.0	0.0	2e-05	24.8	0.0	1.6	1	0	0	1	1	1	1	AAA	domain	(Cdc48	subfamily)
AAA_22	PF13401.6	gi|345007289|ref|YP_004810141.1|	-	2.2e-05	24.8	0.5	0.085	13.1	0.0	2.4	1	1	1	2	2	2	2	AAA	domain
RuvB_N	PF05496.12	gi|345007289|ref|YP_004810141.1|	-	0.00021	21.1	0.0	0.00049	19.9	0.0	1.7	1	1	0	1	1	1	1	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
AAA_24	PF13479.6	gi|345007289|ref|YP_004810141.1|	-	0.00034	20.4	0.0	0.00092	19.0	0.0	1.7	1	0	0	1	1	1	1	AAA	domain
AAA_33	PF13671.6	gi|345007289|ref|YP_004810141.1|	-	0.00083	19.5	0.0	0.0017	18.5	0.0	1.6	1	0	0	1	1	1	1	AAA	domain
TIP49	PF06068.13	gi|345007289|ref|YP_004810141.1|	-	0.0018	17.5	0.0	0.0049	16.1	0.0	1.7	1	1	0	1	1	1	1	TIP49	P-loop	domain
Mg_chelatase	PF01078.21	gi|345007289|ref|YP_004810141.1|	-	0.0033	16.8	0.0	0.0078	15.6	0.0	1.5	1	0	0	1	1	1	1	Magnesium	chelatase,	subunit	ChlI
AAA_18	PF13238.6	gi|345007289|ref|YP_004810141.1|	-	0.0065	17.0	0.0	0.019	15.5	0.0	1.9	1	0	0	1	1	1	1	AAA	domain
AAA_5	PF07728.14	gi|345007289|ref|YP_004810141.1|	-	0.0094	16.0	0.2	0.086	12.8	0.2	2.4	1	1	0	1	1	1	1	AAA	domain	(dynein-related	subfamily)
RNA_helicase	PF00910.22	gi|345007289|ref|YP_004810141.1|	-	0.011	16.0	0.0	0.036	14.5	0.0	1.9	2	0	0	2	2	1	0	RNA	helicase
IstB_IS21	PF01695.17	gi|345007289|ref|YP_004810141.1|	-	0.024	14.4	0.0	0.065	13.0	0.0	1.7	1	1	0	1	1	1	0	IstB-like	ATP	binding	protein
NACHT	PF05729.12	gi|345007289|ref|YP_004810141.1|	-	0.031	14.2	0.1	0.1	12.5	0.0	1.8	2	0	0	2	2	2	0	NACHT	domain
AAA_28	PF13521.6	gi|345007289|ref|YP_004810141.1|	-	0.049	13.9	0.0	0.17	12.1	0.0	1.9	1	1	0	1	1	1	0	AAA	domain
ATPase_2	PF01637.18	gi|345007289|ref|YP_004810141.1|	-	0.055	13.4	0.1	0.64	9.9	0.1	2.3	1	1	0	1	1	1	0	ATPase	domain	predominantly	from	Archaea
Parvo_NS1	PF01057.17	gi|345007289|ref|YP_004810141.1|	-	0.11	11.6	0.0	0.18	10.8	0.0	1.3	1	0	0	1	1	1	0	Parvovirus	non-structural	protein	NS1
KAP_NTPase	PF07693.14	gi|345007289|ref|YP_004810141.1|	-	0.11	11.7	0.0	1.2	8.3	0.0	2.1	2	0	0	2	2	2	0	KAP	family	P-loop	domain
AAA_7	PF12775.7	gi|345007289|ref|YP_004810141.1|	-	0.11	12.0	0.0	0.38	10.3	0.0	1.8	2	0	0	2	2	2	0	P-loop	containing	dynein	motor	region
TsaE	PF02367.17	gi|345007289|ref|YP_004810141.1|	-	0.12	12.4	0.0	0.32	11.0	0.0	1.7	2	0	0	2	2	2	0	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
Phage_B	PF02304.15	gi|345007290|ref|YP_004810142.1|	-	0.063	13.7	0.0	0.17	12.3	0.0	1.7	1	0	0	1	1	1	0	Scaffold	protein	B
HATPase_c	PF02518.26	gi|345007293|ref|YP_004810145.1|	-	1.2e-17	64.5	0.1	2.7e-17	63.3	0.1	1.6	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
PAS_9	PF13426.7	gi|345007293|ref|YP_004810145.1|	-	6.3e-16	58.5	0.0	1.4e-15	57.4	0.0	1.6	1	0	0	1	1	1	1	PAS	domain
PAS	PF00989.25	gi|345007293|ref|YP_004810145.1|	-	3.5e-13	49.6	0.0	1.9e-12	47.2	0.0	2.0	2	0	0	2	2	2	1	PAS	fold
HisKA	PF00512.25	gi|345007293|ref|YP_004810145.1|	-	4.5e-12	45.8	0.9	4.5e-12	45.8	0.9	3.4	4	0	0	4	4	4	1	His	Kinase	A	(phospho-acceptor)	domain
PAS_4	PF08448.10	gi|345007293|ref|YP_004810145.1|	-	4.1e-11	43.1	0.3	1.1e-10	41.7	0.0	1.9	2	0	0	2	2	2	1	PAS	fold
PAS_8	PF13188.7	gi|345007293|ref|YP_004810145.1|	-	4.2e-08	33.0	0.0	1.8e-07	31.0	0.0	2.1	1	0	0	1	1	1	1	PAS	domain
PAS_3	PF08447.12	gi|345007293|ref|YP_004810145.1|	-	2.3e-05	24.6	0.0	5.1e-05	23.5	0.0	1.6	1	0	0	1	1	1	1	PAS	fold
PAS_7	PF12860.7	gi|345007293|ref|YP_004810145.1|	-	0.00021	21.4	0.1	0.00071	19.7	0.0	2.0	2	0	0	2	2	2	1	PAS	fold
PAS_12	PF18095.1	gi|345007293|ref|YP_004810145.1|	-	0.0041	16.8	0.0	0.0081	15.8	0.0	1.5	1	0	0	1	1	1	1	UPF0242	C-terminal	PAS-like	domain
HATPase_c_3	PF13589.6	gi|345007293|ref|YP_004810145.1|	-	0.016	15.1	0.0	0.039	13.8	0.0	1.6	1	0	0	1	1	1	0	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
DAHP_synth_1	PF00793.20	gi|345007293|ref|YP_004810145.1|	-	0.065	12.1	0.0	0.1	11.5	0.0	1.2	1	0	0	1	1	1	0	DAHP	synthetase	I	family
UPF0270	PF06794.12	gi|345007293|ref|YP_004810145.1|	-	0.16	12.1	2.2	18	5.5	0.1	3.3	3	0	0	3	3	3	0	Uncharacterised	protein	family	(UPF0270)
Mrr_cat	PF04471.12	gi|345007294|ref|YP_004810146.1|	-	1.9e-27	95.6	0.1	5.9e-27	94.0	0.0	1.8	2	0	0	2	2	2	1	Restriction	endonuclease
Siva	PF05458.12	gi|345007294|ref|YP_004810146.1|	-	0.0021	17.7	2.6	0.0034	17.1	2.6	1.3	1	0	0	1	1	1	1	Cd27	binding	protein	(Siva)
DZR	PF12773.7	gi|345007294|ref|YP_004810146.1|	-	0.0057	16.6	0.1	0.0057	16.6	0.1	2.0	2	0	0	2	2	2	1	Double	zinc	ribbon
Mrr_cat_2	PF13156.6	gi|345007294|ref|YP_004810146.1|	-	0.015	15.2	0.0	0.029	14.3	0.0	1.4	1	0	0	1	1	1	0	Restriction	endonuclease
zinc_ribbon_15	PF17032.5	gi|345007294|ref|YP_004810146.1|	-	0.069	13.9	0.5	0.069	13.9	0.5	2.1	2	0	0	2	2	2	0	zinc-ribbon	family
zinc_ribbon_2	PF13240.6	gi|345007294|ref|YP_004810146.1|	-	0.15	11.9	1.7	0.39	10.5	1.7	1.8	1	0	0	1	1	1	0	zinc-ribbon	domain
NOB1_Zn_bind	PF08772.11	gi|345007294|ref|YP_004810146.1|	-	2.6	8.3	6.2	7.8	6.7	6.2	1.9	1	1	0	1	1	1	0	Nin	one	binding	(NOB1)	Zn-ribbon	like
HTH_20	PF12840.7	gi|345007296|ref|YP_004810148.1|	-	2.2e-08	34.0	0.5	0.0029	17.7	0.0	2.5	2	0	0	2	2	2	2	Helix-turn-helix	domain
HTH_27	PF13463.6	gi|345007296|ref|YP_004810148.1|	-	4.4e-07	30.3	0.5	0.00012	22.5	0.1	3.0	3	0	0	3	3	3	1	Winged	helix	DNA-binding	domain
MarR_2	PF12802.7	gi|345007296|ref|YP_004810148.1|	-	2.8e-05	23.9	0.2	0.29	11.1	0.1	2.6	2	0	0	2	2	2	2	MarR	family
TrmB	PF01978.19	gi|345007296|ref|YP_004810148.1|	-	7.8e-05	22.5	0.0	0.051	13.5	0.0	2.4	2	0	0	2	2	2	2	Sugar-specific	transcriptional	regulator	TrmB
Rrf2	PF02082.20	gi|345007296|ref|YP_004810148.1|	-	0.0017	18.7	0.0	0.09	13.1	0.0	2.4	2	0	0	2	2	2	1	Transcriptional	regulator
HTH_10	PF04967.12	gi|345007296|ref|YP_004810148.1|	-	0.028	14.2	0.0	2.6	7.9	0.0	2.6	2	0	0	2	2	2	0	HTH	DNA	binding	domain
MarR	PF01047.22	gi|345007296|ref|YP_004810148.1|	-	0.058	13.3	0.0	0.17	11.9	0.0	1.9	2	0	0	2	2	2	0	MarR	family
HTH_11	PF08279.12	gi|345007296|ref|YP_004810148.1|	-	0.11	12.4	0.0	6.9	6.7	0.0	2.3	2	0	0	2	2	2	0	HTH	domain
DAG_kinase_N	PF14513.6	gi|345007296|ref|YP_004810148.1|	-	0.14	12.3	0.0	0.23	11.6	0.0	1.2	1	0	0	1	1	1	0	Diacylglycerol	kinase	N-terminus
GntR	PF00392.21	gi|345007296|ref|YP_004810148.1|	-	0.18	11.5	0.4	7	6.4	0.0	3.1	4	0	0	4	4	4	0	Bacterial	regulatory	proteins,	gntR	family
RPA_interact_C	PF14768.6	gi|345007297|ref|YP_004810149.1|	-	0.0039	17.7	0.8	0.0053	17.3	0.8	1.2	1	0	0	1	1	1	1	Replication	protein	A	interacting	C-terminal
zinc_ribbon_2	PF13240.6	gi|345007297|ref|YP_004810149.1|	-	0.0084	15.8	1.3	3.8	7.3	0.1	2.4	2	0	0	2	2	2	2	zinc-ribbon	domain
Nudix_N_2	PF14803.6	gi|345007297|ref|YP_004810149.1|	-	0.018	15.0	3.3	2.1	8.4	0.1	2.7	3	0	0	3	3	3	0	Nudix	N-terminal
DZR	PF12773.7	gi|345007297|ref|YP_004810149.1|	-	0.02	14.9	1.2	0.032	14.3	1.2	1.3	1	0	0	1	1	1	0	Double	zinc	ribbon
DUF2318	PF10080.9	gi|345007297|ref|YP_004810149.1|	-	0.025	14.7	0.1	0.032	14.3	0.1	1.2	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2318)
GFA	PF04828.14	gi|345007297|ref|YP_004810149.1|	-	0.033	14.5	1.3	0.63	10.4	0.2	2.2	1	1	1	2	2	2	0	Glutathione-dependent	formaldehyde-activating	enzyme
DpnI	PF06044.12	gi|345007297|ref|YP_004810149.1|	-	0.043	13.5	0.3	0.053	13.2	0.3	1.2	1	0	0	1	1	1	0	Dam-replacing	family
DNA_ligase_ZBD	PF03119.16	gi|345007297|ref|YP_004810149.1|	-	0.28	11.2	4.3	0.74	9.9	0.4	2.4	2	0	0	2	2	2	0	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
Lar_restr_allev	PF14354.6	gi|345007298|ref|YP_004810150.1|	-	0.0077	16.6	1.0	0.019	15.3	0.7	1.7	2	0	0	2	2	2	1	Restriction	alleviation	protein	Lar
Cys_rich_KTR	PF14205.6	gi|345007298|ref|YP_004810150.1|	-	0.047	13.5	0.1	0.97	9.3	0.0	2.2	2	0	0	2	2	2	0	Cysteine-rich	KTR
OrfB_Zn_ribbon	PF07282.11	gi|345007298|ref|YP_004810150.1|	-	0.087	12.8	0.7	0.2	11.6	0.7	1.7	1	1	0	1	1	1	0	Putative	transposase	DNA-binding	domain
Zn_Tnp_IS1	PF03811.13	gi|345007298|ref|YP_004810150.1|	-	0.82	9.4	4.0	0.9	9.3	1.9	2.1	2	1	0	2	2	2	0	InsA	N-terminal	domain
DUF3797	PF12677.7	gi|345007298|ref|YP_004810150.1|	-	5.3	7.0	6.1	7.6	6.5	1.3	2.2	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF3797)
DDE_Tnp_1	PF01609.21	gi|345007302|ref|YP_004810154.1|	-	0.075	12.7	0.0	0.077	12.6	0.0	1.0	1	0	0	1	1	1	0	Transposase	DDE	domain
zf-ribbon_3	PF13248.6	gi|345007303|ref|YP_004810155.1|	-	0.0077	15.6	2.6	0.0077	15.6	2.6	3.2	4	0	0	4	4	4	1	zinc-ribbon	domain
HypA	PF01155.19	gi|345007303|ref|YP_004810155.1|	-	0.023	14.7	2.7	3.3	7.7	0.4	2.5	2	0	0	2	2	2	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
DZR	PF12773.7	gi|345007303|ref|YP_004810155.1|	-	0.091	12.8	9.4	0.59	10.2	0.3	3.5	3	1	0	3	3	3	0	Double	zinc	ribbon
zinc_ribbon_15	PF17032.5	gi|345007303|ref|YP_004810155.1|	-	0.15	12.8	7.5	3.9	8.3	0.1	3.5	3	2	1	4	4	4	0	zinc-ribbon	family
RNA_POL_M_15KD	PF02150.16	gi|345007303|ref|YP_004810155.1|	-	0.17	11.8	7.9	5.6	6.9	0.1	4.3	5	0	0	5	5	5	0	RNA	polymerases	M/15	Kd	subunit
zinc_ribbon_2	PF13240.6	gi|345007303|ref|YP_004810155.1|	-	5	7.0	14.4	2.2	8.1	2.6	3.9	4	0	0	4	4	4	0	zinc-ribbon	domain
zf_UBZ	PF18439.1	gi|345007303|ref|YP_004810155.1|	-	5.7	6.6	7.5	19	4.9	0.1	3.6	4	0	0	4	4	4	0	Ubiquitin-Binding	Zinc	Finger
TFIIB	PF00382.19	gi|345007304|ref|YP_004810156.1|	-	3e-30	104.1	0.6	1.6e-15	56.9	0.1	2.3	2	0	0	2	2	2	2	Transcription	factor	TFIIB	repeat
TF_Zn_Ribbon	PF08271.12	gi|345007304|ref|YP_004810156.1|	-	5.4e-13	48.2	3.1	1e-12	47.3	3.1	1.5	1	0	0	1	1	1	1	TFIIB	zinc-binding
RB_B	PF01857.20	gi|345007304|ref|YP_004810156.1|	-	0.016	15.3	0.0	0.032	14.3	0.0	1.4	1	0	0	1	1	1	0	Retinoblastoma-associated	protein	B	domain
Cyclin_C	PF02984.19	gi|345007304|ref|YP_004810156.1|	-	0.027	14.6	0.0	0.13	12.4	0.0	1.9	2	0	0	2	2	2	0	Cyclin,	C-terminal	domain
TackOD1	PF18551.1	gi|345007304|ref|YP_004810156.1|	-	0.037	13.7	0.6	0.066	12.9	0.6	1.3	1	0	0	1	1	1	0	Thaumarchaeal	output	domain	1
OrfB_Zn_ribbon	PF07282.11	gi|345007304|ref|YP_004810156.1|	-	0.062	13.2	1.0	0.17	11.8	1.0	1.7	1	0	0	1	1	1	0	Putative	transposase	DNA-binding	domain
DZR	PF12773.7	gi|345007304|ref|YP_004810156.1|	-	0.088	12.8	1.6	0.15	12.1	0.8	1.7	2	0	0	2	2	2	0	Double	zinc	ribbon
UPF0547	PF10571.9	gi|345007304|ref|YP_004810156.1|	-	0.12	12.5	1.5	0.25	11.4	1.5	1.5	1	0	0	1	1	1	0	Uncharacterised	protein	family	UPF0547
Zn-ribbon_8	PF09723.10	gi|345007304|ref|YP_004810156.1|	-	0.15	12.2	2.7	11	6.2	0.2	2.6	2	0	0	2	2	2	0	Zinc	ribbon	domain
DnaJ_CXXCXGXG	PF00684.19	gi|345007304|ref|YP_004810156.1|	-	0.27	11.6	3.4	0.27	11.6	1.4	2.0	2	0	0	2	2	2	0	DnaJ	central	domain
tRNA_anti-codon	PF01336.25	gi|345007305|ref|YP_004810157.1|	-	0.018	15.0	0.0	0.044	13.8	0.0	1.7	1	0	0	1	1	1	0	OB-fold	nucleic	acid	binding	domain
UPF0175	PF03683.13	gi|345007307|ref|YP_004810159.1|	-	2.4e-12	46.4	0.1	2.9e-12	46.1	0.1	1.1	1	0	0	1	1	1	1	Uncharacterised	protein	family	(UPF0175)
CtsR_C	PF17727.1	gi|345007308|ref|YP_004810160.1|	-	0.038	14.1	0.0	0.065	13.4	0.0	1.5	1	1	0	1	1	1	0	CtsR	C-terminal	dimerization	domain
ATG16	PF08614.11	gi|345007310|ref|YP_004810162.1|	-	0.00021	21.6	1.7	0.00021	21.6	1.7	2.0	2	0	0	2	2	2	1	Autophagy	protein	16	(ATG16)
DivIC	PF04977.15	gi|345007310|ref|YP_004810162.1|	-	0.0051	16.5	1.4	0.013	15.2	1.4	1.7	1	0	0	1	1	1	1	Septum	formation	initiator
SlyX	PF04102.12	gi|345007310|ref|YP_004810162.1|	-	0.011	16.3	2.2	0.011	16.3	2.2	2.6	3	0	0	3	3	3	0	SlyX
DUF1192	PF06698.11	gi|345007310|ref|YP_004810162.1|	-	0.024	14.7	1.6	0.084	12.9	1.6	2.0	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF1192)
DUF2205	PF10224.9	gi|345007310|ref|YP_004810162.1|	-	0.025	14.6	0.4	0.047	13.7	0.4	1.5	1	0	0	1	1	1	0	Short	coiled-coil	protein
HAP1_N	PF04849.13	gi|345007310|ref|YP_004810162.1|	-	0.025	13.8	4.6	0.043	13.0	4.6	1.2	1	0	0	1	1	1	0	HAP1	N-terminal	conserved	region
HSBP1	PF06825.12	gi|345007310|ref|YP_004810162.1|	-	0.046	13.6	2.0	5.2	7.0	0.5	2.6	1	1	1	2	2	2	0	Heat	shock	factor	binding	protein	1
DUF4407	PF14362.6	gi|345007310|ref|YP_004810162.1|	-	0.053	12.9	0.9	0.093	12.1	0.9	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4407)
Prefoldin	PF02996.17	gi|345007310|ref|YP_004810162.1|	-	0.073	13.0	2.6	0.069	13.1	0.9	1.8	2	0	0	2	2	2	0	Prefoldin	subunit
DUF1664	PF07889.12	gi|345007310|ref|YP_004810162.1|	-	0.11	12.5	0.7	0.2	11.7	0.7	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1664)
ZapB	PF06005.12	gi|345007310|ref|YP_004810162.1|	-	0.12	12.8	3.1	0.33	11.4	3.1	1.8	1	0	0	1	1	1	0	Cell	division	protein	ZapB
CASP_C	PF08172.12	gi|345007310|ref|YP_004810162.1|	-	0.14	11.5	3.0	0.25	10.7	3.0	1.4	1	0	0	1	1	1	0	CASP	C	terminal
TMF_DNA_bd	PF12329.8	gi|345007310|ref|YP_004810162.1|	-	0.17	11.9	4.3	0.33	11.0	4.3	1.5	1	0	0	1	1	1	0	TATA	element	modulatory	factor	1	DNA	binding
YabA	PF06156.13	gi|345007310|ref|YP_004810162.1|	-	0.18	12.4	0.9	0.47	11.1	0.9	1.6	1	0	0	1	1	1	0	Initiation	control	protein	YabA
CENP-Q	PF13094.6	gi|345007310|ref|YP_004810162.1|	-	0.19	12.0	5.4	0.49	10.6	5.4	1.6	1	0	0	1	1	1	0	CENP-Q,	a	CENPA-CAD	centromere	complex	subunit
FlaC_arch	PF05377.11	gi|345007310|ref|YP_004810162.1|	-	0.3	11.5	0.9	0.57	10.6	0.9	1.5	1	0	0	1	1	1	0	Flagella	accessory	protein	C	(FlaC)
UPF0242	PF06785.11	gi|345007310|ref|YP_004810162.1|	-	0.39	10.8	2.9	0.64	10.1	2.9	1.3	1	0	0	1	1	1	0	Uncharacterised	protein	family	(UPF0242)	N-terminus
XhlA	PF10779.9	gi|345007310|ref|YP_004810162.1|	-	0.48	10.7	2.1	1.1	9.5	2.1	1.6	1	0	0	1	1	1	0	Haemolysin	XhlA
Cep57_CLD_2	PF14197.6	gi|345007310|ref|YP_004810162.1|	-	0.55	10.4	7.4	1.4	9.1	7.4	1.6	1	0	0	1	1	1	0	Centrosome	localisation	domain	of	PPC89
DUF2203	PF09969.9	gi|345007310|ref|YP_004810162.1|	-	3.8	8.3	5.4	22	5.8	0.9	2.6	2	0	0	2	2	2	0	Uncharacterized	conserved	protein	(DUF2203)
DUF87	PF01935.17	gi|345007311|ref|YP_004810163.1|	-	0.0018	18.4	0.0	0.0064	16.6	0.0	2.0	2	0	0	2	2	2	1	Helicase	HerA,	central	domain
TrwB_AAD_bind	PF10412.9	gi|345007311|ref|YP_004810163.1|	-	0.0019	17.2	0.0	0.15	10.9	0.0	2.2	2	0	0	2	2	2	2	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
TraG-D_C	PF12696.7	gi|345007311|ref|YP_004810163.1|	-	0.018	15.0	0.0	0.073	13.1	0.0	2.0	2	0	0	2	2	2	0	TraM	recognition	site	of	TraD	and	TraG
AAA_10	PF12846.7	gi|345007312|ref|YP_004810164.1|	-	0.00049	19.1	0.4	0.2	10.5	0.1	2.2	2	0	0	2	2	2	2	AAA-like	domain
CagE_TrbE_VirB	PF03135.14	gi|345007312|ref|YP_004810164.1|	-	0.0005	20.2	0.0	0.00087	19.4	0.0	1.3	1	0	0	1	1	1	1	CagE,	TrbE,	VirB	family,	component	of	type	IV	transporter	system
AAA_22	PF13401.6	gi|345007312|ref|YP_004810164.1|	-	0.0013	19.0	1.8	0.14	12.5	0.2	3.4	3	1	1	4	4	4	1	AAA	domain
Zot	PF05707.12	gi|345007312|ref|YP_004810164.1|	-	0.005	16.5	0.4	0.032	13.9	0.1	2.1	2	0	0	2	2	2	1	Zonular	occludens	toxin	(Zot)
TraG-D_C	PF12696.7	gi|345007312|ref|YP_004810164.1|	-	0.013	15.5	0.0	0.031	14.3	0.0	1.6	1	0	0	1	1	1	0	TraM	recognition	site	of	TraD	and	TraG
LssY_C	PF14067.6	gi|345007314|ref|YP_004810166.1|	-	0.059	12.9	0.0	0.098	12.2	0.0	1.3	1	0	0	1	1	1	0	LssY	C-terminus
DUF4982	PF16355.5	gi|345007315|ref|YP_004810167.1|	-	0.0001	22.2	0.1	0.0004	20.3	0.1	2.0	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF4982)
TAT_signal	PF10518.9	gi|345007315|ref|YP_004810167.1|	-	0.14	12.0	0.1	0.26	11.2	0.1	1.5	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
Meth_synt_2	PF01717.18	gi|345007316|ref|YP_004810168.1|	-	0.073	12.3	0.1	0.12	11.7	0.1	1.2	1	0	0	1	1	1	0	Cobalamin-independent	synthase,	Catalytic	domain
TrbC	PF04956.13	gi|345007317|ref|YP_004810169.1|	-	0.092	13.0	2.4	0.13	12.4	1.1	1.8	2	0	0	2	2	2	0	TrbC/VIRB2	family
DUF3040	PF11239.8	gi|345007317|ref|YP_004810169.1|	-	0.64	10.3	4.3	8.8	6.7	0.0	2.5	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF3040)
XLF	PF09302.11	gi|345007318|ref|YP_004810170.1|	-	0.028	14.6	0.1	0.031	14.4	0.1	1.0	1	0	0	1	1	1	0	XLF-Cernunnos,	XRcc4-like	factor,	NHEJ	component
DUF5333	PF17267.2	gi|345007318|ref|YP_004810170.1|	-	0.035	14.3	0.1	0.038	14.2	0.1	1.3	1	0	0	1	1	1	0	Family	of	unknown	function	(DUF5333)
RHH_1	PF01402.21	gi|345007318|ref|YP_004810170.1|	-	0.068	13.1	1.6	0.23	11.4	0.2	2.1	2	0	0	2	2	2	0	Ribbon-helix-helix	protein,	copG	family
RNA_pol_Rpb2_5	PF04567.17	gi|345007319|ref|YP_004810171.1|	-	0.032	14.8	0.5	0.053	14.1	0.4	1.6	1	1	0	1	1	1	0	RNA	polymerase	Rpb2,	domain	5
PRiA4_ORF3	PF07929.11	gi|345007320|ref|YP_004810172.1|	-	2.6e-18	66.3	0.0	4e-18	65.7	0.0	1.1	1	0	0	1	1	1	1	Plasmid	pRiA4b	ORF-3-like	protein
DDE_Tnp_1	PF01609.21	gi|345007321|ref|YP_004810173.1|	-	2.8e-10	40.2	0.1	5.6e-10	39.2	0.1	1.5	1	0	0	1	1	1	1	Transposase	DDE	domain
PGA2	PF07543.12	gi|345007321|ref|YP_004810173.1|	-	0.05	13.6	0.5	0.088	12.8	0.1	1.6	2	0	0	2	2	2	0	Protein	trafficking	PGA2
DDE_Tnp_1_4	PF13701.6	gi|345007321|ref|YP_004810173.1|	-	0.11	10.7	0.5	0.43	8.8	0.5	1.9	1	1	0	1	1	1	0	Transposase	DDE	domain	group	1
DDE_Tnp_1	PF01609.21	gi|345007322|ref|YP_004810174.1|	-	0.027	14.1	0.1	0.14	11.8	0.0	2.1	1	1	0	1	1	1	0	Transposase	DDE	domain
UDPG_MGDP_dh_N	PF03721.14	gi|345007323|ref|YP_004810175.1|	-	1.1e-52	178.4	0.1	3.4e-52	176.7	0.0	1.8	2	0	0	2	2	2	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
UDPG_MGDP_dh	PF00984.19	gi|345007323|ref|YP_004810175.1|	-	9.7e-38	128.3	0.1	1.8e-37	127.4	0.1	1.5	1	0	0	1	1	1	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	central	domain
UDPG_MGDP_dh_C	PF03720.15	gi|345007323|ref|YP_004810175.1|	-	4.6e-28	97.7	0.1	1.6e-27	96.0	0.0	1.9	2	0	0	2	2	2	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	UDP	binding	domain
3HCDH_N	PF02737.18	gi|345007323|ref|YP_004810175.1|	-	0.00017	21.5	0.0	0.00045	20.2	0.0	1.8	1	0	0	1	1	1	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
NAD_Gly3P_dh_N	PF01210.23	gi|345007323|ref|YP_004810175.1|	-	0.0007	19.6	0.0	0.0019	18.2	0.0	1.7	1	0	0	1	1	1	1	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
ApbA	PF02558.16	gi|345007323|ref|YP_004810175.1|	-	0.0044	16.7	0.0	0.017	14.8	0.0	2.0	2	1	0	2	2	2	1	Ketopantoate	reductase	PanE/ApbA
Pyr_redox	PF00070.27	gi|345007323|ref|YP_004810175.1|	-	0.0064	17.0	0.3	0.028	15.0	0.1	2.2	2	0	0	2	2	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
2-Hacid_dh_C	PF02826.19	gi|345007323|ref|YP_004810175.1|	-	0.013	14.9	0.0	0.31	10.4	0.0	2.3	2	0	0	2	2	2	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
Pyr_redox_2	PF07992.14	gi|345007323|ref|YP_004810175.1|	-	0.013	14.7	0.1	0.026	13.8	0.1	1.4	1	0	0	1	1	1	0	Pyridine	nucleotide-disulphide	oxidoreductase
F420_oxidored	PF03807.17	gi|345007323|ref|YP_004810175.1|	-	0.024	15.2	0.1	3.1	8.4	0.0	3.7	3	1	0	3	3	3	0	NADP	oxidoreductase	coenzyme	F420-dependent
NAD_binding_11	PF14833.6	gi|345007323|ref|YP_004810175.1|	-	0.024	14.9	0.5	0.2	11.9	0.5	2.3	1	1	0	1	1	1	0	NAD-binding	of	NADP-dependent	3-hydroxyisobutyrate	dehydrogenase
TrkA_N	PF02254.18	gi|345007323|ref|YP_004810175.1|	-	0.032	14.5	0.7	0.69	10.2	0.0	3.0	3	0	0	3	3	3	0	TrkA-N	domain
Rossmann-like	PF10727.9	gi|345007323|ref|YP_004810175.1|	-	0.072	13.0	0.4	0.29	11.0	0.2	2.2	2	0	0	2	2	2	0	Rossmann-like	domain
NAD_binding_2	PF03446.15	gi|345007323|ref|YP_004810175.1|	-	0.074	13.2	0.1	0.35	11.0	0.0	2.1	2	0	0	2	2	2	0	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
AlaDh_PNT_C	PF01262.21	gi|345007323|ref|YP_004810175.1|	-	0.17	11.2	2.5	0.17	11.2	0.2	2.0	2	1	0	2	2	2	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
HTH_20	PF12840.7	gi|345007324|ref|YP_004810176.1|	-	1.9e-05	24.6	0.0	2.2e-05	24.4	0.0	1.1	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_45	PF14947.6	gi|345007324|ref|YP_004810176.1|	-	0.0012	18.8	0.0	0.0015	18.4	0.0	1.1	1	0	0	1	1	1	1	Winged	helix-turn-helix
DprA_WH	PF17782.1	gi|345007324|ref|YP_004810176.1|	-	0.0046	17.0	0.1	0.0065	16.6	0.1	1.3	1	0	0	1	1	1	1	DprA	winged	helix	domain
HTH_Crp_2	PF13545.6	gi|345007324|ref|YP_004810176.1|	-	0.0064	16.4	0.0	0.0097	15.9	0.0	1.5	1	1	1	2	2	2	1	Crp-like	helix-turn-helix	domain
HTH_36	PF13730.6	gi|345007324|ref|YP_004810176.1|	-	0.0065	16.4	0.0	0.012	15.5	0.0	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_27	PF13463.6	gi|345007324|ref|YP_004810176.1|	-	0.0069	16.9	0.0	0.01	16.3	0.0	1.3	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
Replic_Relax	PF13814.6	gi|345007324|ref|YP_004810176.1|	-	0.0094	16.0	0.0	0.01	15.9	0.0	1.1	1	0	0	1	1	1	1	Replication-relaxation
HTH_IclR	PF09339.10	gi|345007324|ref|YP_004810176.1|	-	0.023	14.5	0.0	0.032	14.0	0.0	1.2	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
MarR_2	PF12802.7	gi|345007324|ref|YP_004810176.1|	-	0.031	14.2	0.0	0.042	13.7	0.0	1.1	1	0	0	1	1	1	0	MarR	family
HTH_29	PF13551.6	gi|345007324|ref|YP_004810176.1|	-	0.035	14.1	0.0	0.059	13.4	0.0	1.5	1	1	0	1	1	1	0	Winged	helix-turn	helix
TrmB	PF01978.19	gi|345007324|ref|YP_004810176.1|	-	0.045	13.6	0.0	0.061	13.2	0.0	1.4	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
HTH_5	PF01022.20	gi|345007324|ref|YP_004810176.1|	-	0.058	13.3	0.0	0.085	12.7	0.0	1.1	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
MarR	PF01047.22	gi|345007324|ref|YP_004810176.1|	-	0.093	12.7	0.0	0.14	12.1	0.0	1.3	1	0	0	1	1	1	0	MarR	family
Trp_repressor	PF01371.19	gi|345007324|ref|YP_004810176.1|	-	0.14	12.3	0.0	0.19	11.9	0.0	1.2	1	0	0	1	1	1	0	Trp	repressor	protein
DUF2059	PF09832.9	gi|345007325|ref|YP_004810177.1|	-	0.11	12.6	0.0	0.13	12.4	0.0	1.2	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2059)
DUF1328	PF07043.13	gi|345007326|ref|YP_004810178.1|	-	4.5e-11	42.8	15.3	6.9e-11	42.2	15.3	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1328)
zf-ribbon_3	PF13248.6	gi|345007327|ref|YP_004810179.1|	-	0.00064	19.0	1.3	0.087	12.3	0.2	2.2	2	0	0	2	2	2	2	zinc-ribbon	domain
zinc_ribbon_4	PF13717.6	gi|345007327|ref|YP_004810179.1|	-	0.0016	18.3	0.9	0.29	11.1	0.1	2.1	2	0	0	2	2	2	2	zinc-ribbon	domain
DZR	PF12773.7	gi|345007327|ref|YP_004810179.1|	-	0.0019	18.1	0.9	0.003	17.5	0.9	1.3	1	1	0	1	1	1	1	Double	zinc	ribbon
zinc_ribbon_2	PF13240.6	gi|345007327|ref|YP_004810179.1|	-	0.0068	16.1	1.0	0.071	12.8	0.2	2.1	2	0	0	2	2	2	1	zinc-ribbon	domain
zf-LITAF-like	PF10601.9	gi|345007327|ref|YP_004810179.1|	-	0.016	15.4	2.1	1.8	8.9	0.2	2.1	1	1	1	2	2	2	0	LITAF-like	zinc	ribbon	domain
CpXC	PF14353.6	gi|345007327|ref|YP_004810179.1|	-	0.028	14.5	0.3	0.035	14.1	0.3	1.2	1	0	0	1	1	1	0	CpXC	protein
TF_Zn_Ribbon	PF08271.12	gi|345007327|ref|YP_004810179.1|	-	0.04	13.4	1.8	4.2	7.0	0.4	2.1	2	0	0	2	2	2	0	TFIIB	zinc-binding
Zn-ribbon_8	PF09723.10	gi|345007327|ref|YP_004810179.1|	-	0.052	13.7	0.6	2.9	8.1	0.1	2.1	2	0	0	2	2	2	0	Zinc	ribbon	domain
zf-C4_Topoisom	PF01396.19	gi|345007327|ref|YP_004810179.1|	-	0.07	12.9	2.0	1.2	9.0	0.1	2.1	2	0	0	2	2	2	0	Topoisomerase	DNA	binding	C4	zinc	finger
zf-RING_7	PF02591.15	gi|345007327|ref|YP_004810179.1|	-	0.084	13.1	3.4	2.1	8.6	0.1	2.2	2	0	0	2	2	2	0	C4-type	zinc	ribbon	domain
Yippee-Mis18	PF03226.14	gi|345007327|ref|YP_004810179.1|	-	0.12	12.6	1.1	4.4	7.6	0.2	2.0	1	1	1	2	2	2	0	Yippee	zinc-binding/DNA-binding	/Mis18,	centromere	assembly
zf-ACC	PF17848.1	gi|345007327|ref|YP_004810179.1|	-	0.14	12.2	3.4	5	7.3	0.1	2.2	2	0	0	2	2	2	0	Acetyl-coA	carboxylase	zinc	finger	domain
Zn_Tnp_IS1595	PF12760.7	gi|345007327|ref|YP_004810179.1|	-	0.45	10.5	3.3	8.8	6.4	3.7	2.0	1	1	1	2	2	2	0	Transposase	zinc-ribbon	domain
Eapp_C	PF10238.9	gi|345007327|ref|YP_004810179.1|	-	0.53	10.3	2.6	2.5	8.1	0.2	2.0	1	1	1	2	2	2	0	E2F-associated	phosphoprotein
zinc_ribbon_5	PF13719.6	gi|345007327|ref|YP_004810179.1|	-	0.94	9.3	3.2	4.1	7.2	0.2	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
DUF1059	PF06348.11	gi|345007329|ref|YP_004810181.1|	-	3.4e-12	46.4	2.0	4.1e-12	46.1	2.0	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1059)
MEA1	PF06910.11	gi|345007329|ref|YP_004810181.1|	-	0.018	15.6	0.4	0.018	15.6	0.4	1.0	1	0	0	1	1	1	0	Male	enhanced	antigen	1	(MEA1)
OrfB_IS605	PF01385.19	gi|345007331|ref|YP_004810183.1|	-	7.6e-30	103.6	0.5	7.6e-30	103.6	0.5	1.6	2	0	0	2	2	2	1	Probable	transposase
OrfB_Zn_ribbon	PF07282.11	gi|345007331|ref|YP_004810183.1|	-	5.4e-19	67.9	0.7	1.1e-18	66.9	0.2	1.8	2	0	0	2	2	2	1	Putative	transposase	DNA-binding	domain
Prim_Zn_Ribbon	PF08273.12	gi|345007331|ref|YP_004810183.1|	-	0.38	11.1	2.5	1.1	9.6	2.5	1.8	1	0	0	1	1	1	0	Zinc-binding	domain	of	primase-helicase
Ferritin_2	PF13668.6	gi|345007333|ref|YP_004810185.1|	-	1.2e-38	132.4	0.8	1.2e-38	132.4	0.8	1.4	2	0	0	2	2	2	1	Ferritin-like	domain
TrmB	PF01978.19	gi|345007334|ref|YP_004810186.1|	-	2.4e-16	59.4	0.0	3.5e-16	58.8	0.0	1.3	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_42	PF06224.12	gi|345007334|ref|YP_004810186.1|	-	0.018	14.6	0.1	0.024	14.2	0.1	1.2	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
Cdc6_C	PF09079.11	gi|345007334|ref|YP_004810186.1|	-	0.049	13.6	0.0	0.08	12.9	0.0	1.5	1	0	0	1	1	1	0	CDC6,	C	terminal	winged	helix	domain
DUF2250	PF10007.9	gi|345007334|ref|YP_004810186.1|	-	0.056	13.6	0.0	0.15	12.2	0.0	1.7	1	1	1	2	2	2	0	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
HalOD1	PF18545.1	gi|345007335|ref|YP_004810187.1|	-	4.1e-23	81.4	2.8	5.7e-23	81.0	2.8	1.2	1	0	0	1	1	1	1	Halobacterial	output	domain	1
Ribosomal_S27e	PF01667.17	gi|345007335|ref|YP_004810187.1|	-	0.17	11.6	0.1	0.24	11.1	0.1	1.2	1	0	0	1	1	1	0	Ribosomal	protein	S27
Phage_integrase	PF00589.22	gi|345007336|ref|YP_004810188.1|	-	4.4e-05	23.3	0.0	0.00016	21.6	0.0	2.0	1	1	0	1	1	1	1	Phage	integrase	family
Phage_int_SAM_5	PF13102.6	gi|345007336|ref|YP_004810188.1|	-	0.001	19.4	0.0	0.0021	18.4	0.0	1.5	1	0	0	1	1	1	1	Phage	integrase	SAM-like	domain
PRiA4_ORF3	PF07929.11	gi|345007337|ref|YP_004810189.1|	-	7e-15	55.2	0.1	8.3e-15	54.9	0.1	1.1	1	0	0	1	1	1	1	Plasmid	pRiA4b	ORF-3-like	protein
DUF3368	PF11848.8	gi|345007338|ref|YP_004810190.1|	-	0.03	14.1	0.0	0.067	13.0	0.0	1.6	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3368)
UPF0175	PF03683.13	gi|345007339|ref|YP_004810191.1|	-	7.5e-17	60.8	1.1	1e-16	60.3	1.1	1.3	1	0	0	1	1	1	1	Uncharacterised	protein	family	(UPF0175)
DUF1847	PF08901.11	gi|345007339|ref|YP_004810191.1|	-	0.14	11.8	0.0	0.16	11.6	0.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1847)
E1-E2_ATPase	PF00122.20	gi|345007340|ref|YP_004810192.1|	-	4.2e-49	166.5	1.6	1.2e-48	165.0	1.6	1.8	1	0	0	1	1	1	1	E1-E2	ATPase
Hydrolase	PF00702.26	gi|345007340|ref|YP_004810192.1|	-	1.1e-47	163.0	7.3	2.8e-47	161.7	7.3	1.6	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
HMA	PF00403.26	gi|345007340|ref|YP_004810192.1|	-	1.7e-26	92.5	0.0	3.4e-13	49.8	0.0	2.8	2	0	0	2	2	2	2	Heavy-metal-associated	domain
Hydrolase_3	PF08282.12	gi|345007340|ref|YP_004810192.1|	-	7.2e-06	25.9	1.6	0.029	14.1	0.7	2.6	2	0	0	2	2	2	2	haloacid	dehalogenase-like	hydrolase
Hydrolase_6	PF13344.6	gi|345007340|ref|YP_004810192.1|	-	0.00029	20.9	0.7	0.0037	17.4	0.0	3.2	4	0	0	4	4	4	1	Haloacid	dehalogenase-like	hydrolase
HAD	PF12710.7	gi|345007340|ref|YP_004810192.1|	-	0.00091	19.7	0.0	0.003	18.0	0.0	1.9	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
HTH_24	PF13412.6	gi|345007340|ref|YP_004810192.1|	-	0.032	13.8	0.1	3.2	7.4	0.0	2.6	2	0	0	2	2	2	0	Winged	helix-turn-helix	DNA-binding
Sgf11	PF08209.11	gi|345007340|ref|YP_004810192.1|	-	0.18	11.4	1.0	7.3	6.2	0.1	2.3	2	0	0	2	2	2	0	Sgf11	(transcriptional	regulation	protein)
HTH_AsnC-type	PF13404.6	gi|345007341|ref|YP_004810193.1|	-	7.9e-15	54.4	0.6	1.5e-14	53.5	0.6	1.5	1	0	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
HTH_24	PF13412.6	gi|345007341|ref|YP_004810193.1|	-	1.1e-14	53.7	0.0	1.6e-14	53.2	0.0	1.3	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_5	PF01022.20	gi|345007341|ref|YP_004810193.1|	-	1.3e-05	24.9	0.1	2.7e-05	24.0	0.0	1.6	2	0	0	2	2	2	1	Bacterial	regulatory	protein,	arsR	family
MarR_2	PF12802.7	gi|345007341|ref|YP_004810193.1|	-	7.3e-05	22.6	0.1	0.00017	21.4	0.1	1.6	1	0	0	1	1	1	1	MarR	family
MarR	PF01047.22	gi|345007341|ref|YP_004810193.1|	-	0.00011	22.1	0.0	0.00018	21.3	0.0	1.4	1	0	0	1	1	1	1	MarR	family
HTH_20	PF12840.7	gi|345007341|ref|YP_004810193.1|	-	0.00011	22.2	0.0	0.00032	20.7	0.0	1.7	1	0	0	1	1	1	1	Helix-turn-helix	domain
Arc_trans_TRASH	PF08394.10	gi|345007341|ref|YP_004810193.1|	-	0.00025	21.3	0.6	0.00037	20.7	0.6	1.3	1	0	0	1	1	1	1	Archaeal	TRASH	domain
TrmB	PF01978.19	gi|345007341|ref|YP_004810193.1|	-	0.0051	16.7	0.0	0.013	15.4	0.0	1.6	2	0	0	2	2	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_IclR	PF09339.10	gi|345007341|ref|YP_004810193.1|	-	0.0057	16.4	0.3	0.022	14.6	0.0	1.9	2	0	0	2	2	2	1	IclR	helix-turn-helix	domain
HTH_Crp_2	PF13545.6	gi|345007341|ref|YP_004810193.1|	-	0.0092	15.9	0.1	0.021	14.8	0.1	1.6	1	0	0	1	1	1	1	Crp-like	helix-turn-helix	domain
HTH_23	PF13384.6	gi|345007341|ref|YP_004810193.1|	-	0.022	14.5	0.0	0.046	13.5	0.0	1.5	1	0	0	1	1	1	0	Homeodomain-like	domain
YHS	PF04945.13	gi|345007341|ref|YP_004810193.1|	-	0.024	14.7	0.3	0.044	13.9	0.3	1.4	1	0	0	1	1	1	0	YHS	domain
HTH_28	PF13518.6	gi|345007341|ref|YP_004810193.1|	-	0.079	13.1	0.0	0.18	11.9	0.0	1.6	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_11	PF08279.12	gi|345007341|ref|YP_004810193.1|	-	0.1	12.6	0.0	0.19	11.7	0.0	1.4	1	0	0	1	1	1	0	HTH	domain
FaeA	PF04703.12	gi|345007341|ref|YP_004810193.1|	-	0.14	12.5	0.0	0.73	10.3	0.0	2.0	1	1	0	1	1	1	0	FaeA-like	protein
AceK	PF06315.11	gi|345007341|ref|YP_004810193.1|	-	0.16	10.4	0.0	0.2	10.1	0.0	1.1	1	0	0	1	1	1	0	Isocitrate	dehydrogenase	kinase/phosphatase	(AceK)
HECT_2	PF09814.9	gi|345007341|ref|YP_004810193.1|	-	0.26	10.1	0.5	11	4.7	0.0	2.0	1	1	1	2	2	2	0	HECT-like	Ubiquitin-conjugating	enzyme	(E2)-binding
ATPase-cat_bd	PF12156.8	gi|345007341|ref|YP_004810193.1|	-	0.3	11.8	5.1	0.23	12.2	3.6	1.5	2	0	0	2	2	1	0	Putative	metal-binding	domain	of	cation	transport	ATPase
Zn-ribbon_8	PF09723.10	gi|345007341|ref|YP_004810193.1|	-	0.35	11.0	2.6	5	7.3	0.8	2.3	2	0	0	2	2	2	0	Zinc	ribbon	domain
GD_AH_C	PF04295.13	gi|345007342|ref|YP_004810194.1|	-	0.081	11.7	0.0	0.1	11.4	0.0	1.1	1	0	0	1	1	1	0	D-galactarate	dehydratase	/	Altronate	hydrolase,	C	terminus
TraF	PF13728.6	gi|345007342|ref|YP_004810194.1|	-	0.2	11.5	2.7	0.25	11.1	2.7	1.1	1	0	0	1	1	1	0	F	plasmid	transfer	operon	protein
AAA_31	PF13614.6	gi|345007343|ref|YP_004810195.1|	-	2.5e-28	99.2	0.0	3.2e-28	98.8	0.0	1.1	1	0	0	1	1	1	1	AAA	domain
CBP_BcsQ	PF06564.12	gi|345007343|ref|YP_004810195.1|	-	1.7e-09	37.5	0.0	2.9e-08	33.5	0.0	2.0	2	0	0	2	2	2	1	Cellulose	biosynthesis	protein	BcsQ
CbiA	PF01656.23	gi|345007343|ref|YP_004810195.1|	-	2e-07	31.1	0.0	2.8e-07	30.7	0.0	1.2	1	0	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
MipZ	PF09140.11	gi|345007343|ref|YP_004810195.1|	-	1.5e-06	27.7	0.1	5.4e-06	25.9	0.1	1.8	1	1	0	1	1	1	1	ATPase	MipZ
ParA	PF10609.9	gi|345007343|ref|YP_004810195.1|	-	3e-05	23.6	0.0	6.3e-05	22.5	0.0	1.4	1	1	0	1	1	1	1	NUBPL	iron-transfer	P-loop	NTPase
ArsA_ATPase	PF02374.15	gi|345007343|ref|YP_004810195.1|	-	0.0014	17.9	0.1	0.0032	16.7	0.1	1.6	1	1	0	1	1	1	1	Anion-transporting	ATPase
Fer4_NifH	PF00142.18	gi|345007343|ref|YP_004810195.1|	-	0.029	13.8	0.0	0.44	10.0	0.0	2.3	2	0	0	2	2	2	0	4Fe-4S	iron	sulfur	cluster	binding	proteins,	NifH/frxC	family
VirC1	PF07015.11	gi|345007343|ref|YP_004810195.1|	-	0.14	11.4	0.0	0.56	9.5	0.0	1.9	2	1	0	2	2	2	0	VirC1	protein
Glyoxalase_3	PF13468.6	gi|345007344|ref|YP_004810196.1|	-	8e-18	65.2	0.2	2.4e-17	63.6	0.1	1.8	2	0	0	2	2	2	1	Glyoxalase-like	domain
Glyoxalase_4	PF13669.6	gi|345007344|ref|YP_004810196.1|	-	1.9e-07	31.3	0.0	3.7e-07	30.4	0.0	1.4	1	0	0	1	1	1	1	Glyoxalase/Bleomycin	resistance	protein/Dioxygenase	superfamily
Glycos_transf_2	PF00535.26	gi|345007345|ref|YP_004810197.1|	-	2.6e-07	30.6	0.0	5.3e-07	29.6	0.0	1.5	1	1	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_tranf_2_2	PF10111.9	gi|345007345|ref|YP_004810197.1|	-	6.3e-05	22.6	0.0	0.23	10.9	0.0	2.1	2	0	0	2	2	2	2	Glycosyltransferase	like	family	2
Glyco_transf_7C	PF02709.14	gi|345007345|ref|YP_004810197.1|	-	0.00036	20.1	0.3	0.00061	19.4	0.3	1.3	1	0	0	1	1	1	1	N-terminal	domain	of	galactosyltransferase
Glyco_transf_21	PF13506.6	gi|345007345|ref|YP_004810197.1|	-	0.00049	19.6	0.0	0.00095	18.7	0.0	1.5	1	1	0	1	1	1	1	Glycosyl	transferase	family	21
Glyco_trans_2_3	PF13632.6	gi|345007345|ref|YP_004810197.1|	-	0.0076	16.2	0.1	0.015	15.2	0.1	1.5	1	0	0	1	1	1	1	Glycosyl	transferase	family	group	2
DDE_Tnp_IS66	PF03050.14	gi|345007346|ref|YP_004810198.1|	-	4.4e-49	167.5	0.2	4.4e-49	167.5	0.2	1.9	2	0	0	2	2	2	1	Transposase	IS66	family
SlyX	PF04102.12	gi|345007346|ref|YP_004810198.1|	-	0.00015	22.3	5.5	0.00052	20.6	5.5	1.9	1	0	0	1	1	1	1	SlyX
MscS_porin	PF12795.7	gi|345007346|ref|YP_004810198.1|	-	0.0008	19.0	5.1	0.0008	19.0	5.1	1.8	2	0	0	2	2	2	1	Mechanosensitive	ion	channel	porin	domain
UPF0242	PF06785.11	gi|345007346|ref|YP_004810198.1|	-	0.0026	17.9	11.2	0.0048	17.0	11.2	1.4	1	0	0	1	1	1	1	Uncharacterised	protein	family	(UPF0242)	N-terminus
DUF16	PF01519.16	gi|345007346|ref|YP_004810198.1|	-	0.0029	18.1	5.6	0.0061	17.0	5.6	1.4	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF16
zf-IS66	PF13005.7	gi|345007346|ref|YP_004810198.1|	-	0.0036	17.7	3.7	0.0036	17.7	3.7	2.6	3	0	0	3	3	1	1	zinc-finger	binding	domain	of	transposase	IS66
HemX	PF04375.14	gi|345007346|ref|YP_004810198.1|	-	0.0046	16.3	2.5	0.0074	15.6	2.5	1.2	1	0	0	1	1	1	1	HemX,	putative	uroporphyrinogen-III	C-methyltransferase
Atg14	PF10186.9	gi|345007346|ref|YP_004810198.1|	-	0.006	15.7	4.1	0.01	15.0	4.1	1.3	1	0	0	1	1	1	1	Vacuolar	sorting	38	and	autophagy-related	subunit	14
SKA1	PF07160.12	gi|345007346|ref|YP_004810198.1|	-	0.0097	15.8	0.7	0.017	15.0	0.7	1.3	1	0	0	1	1	1	1	Spindle	and	kinetochore-associated	protein	1
YkyA	PF10368.9	gi|345007346|ref|YP_004810198.1|	-	0.021	14.5	6.4	0.037	13.7	6.4	1.2	1	0	0	1	1	1	0	Putative	cell-wall	binding	lipoprotein
ATG16	PF08614.11	gi|345007346|ref|YP_004810198.1|	-	0.027	14.7	7.0	0.027	14.7	7.0	2.1	3	0	0	3	3	1	0	Autophagy	protein	16	(ATG16)
HOOK	PF05622.12	gi|345007346|ref|YP_004810198.1|	-	0.03	12.5	6.0	0.044	11.9	6.0	1.1	1	0	0	1	1	1	0	HOOK	protein
DDE_Tnp_IS240	PF13610.6	gi|345007346|ref|YP_004810198.1|	-	0.037	14.3	3.3	0.43	10.8	0.0	2.6	2	1	0	2	2	2	0	DDE	domain
AAA_23	PF13476.6	gi|345007346|ref|YP_004810198.1|	-	0.037	14.5	4.7	0.08	13.4	4.7	1.5	1	0	0	1	1	1	0	AAA	domain
Noelin-1	PF12308.8	gi|345007346|ref|YP_004810198.1|	-	0.042	13.8	2.0	0.085	12.9	0.9	1.9	2	0	0	2	2	2	0	Neurogenesis	glycoprotein
Phage_Mu_Gam	PF07352.12	gi|345007346|ref|YP_004810198.1|	-	0.048	13.6	4.8	0.087	12.7	4.8	1.4	1	0	0	1	1	1	0	Bacteriophage	Mu	Gam	like	protein
DUF3584	PF12128.8	gi|345007346|ref|YP_004810198.1|	-	0.059	10.9	6.5	0.088	10.3	6.5	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3584)
XhlA	PF10779.9	gi|345007346|ref|YP_004810198.1|	-	0.062	13.5	8.4	0.15	12.3	8.4	1.7	1	0	0	1	1	1	0	Haemolysin	XhlA
TMPIT	PF07851.13	gi|345007346|ref|YP_004810198.1|	-	0.077	12.2	3.2	0.12	11.6	3.2	1.2	1	0	0	1	1	1	0	TMPIT-like	protein
Phage_HK97_TLTM	PF06120.11	gi|345007346|ref|YP_004810198.1|	-	0.094	11.9	1.1	0.15	11.3	1.1	1.2	1	0	0	1	1	1	0	Tail	length	tape	measure	protein
Exonuc_VII_L	PF02601.15	gi|345007346|ref|YP_004810198.1|	-	0.1	12.1	1.3	0.24	10.9	1.3	1.5	1	0	0	1	1	1	0	Exonuclease	VII,	large	subunit
Fmp27_WPPW	PF10359.9	gi|345007346|ref|YP_004810198.1|	-	0.11	11.3	2.2	0.17	10.7	2.2	1.2	1	0	0	1	1	1	0	RNA	pol	II	promoter	Fmp27	protein	domain
DUF1664	PF07889.12	gi|345007346|ref|YP_004810198.1|	-	0.11	12.5	2.0	0.21	11.7	2.0	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1664)
FPP	PF05911.11	gi|345007346|ref|YP_004810198.1|	-	0.11	10.6	5.4	0.15	10.2	5.4	1.1	1	0	0	1	1	1	0	Filament-like	plant	protein,	long	coiled-coil
HSBP1	PF06825.12	gi|345007346|ref|YP_004810198.1|	-	0.18	11.7	5.5	0.45	10.4	1.1	2.4	1	1	0	2	2	2	0	Heat	shock	factor	binding	protein	1
DUF4446	PF14584.6	gi|345007346|ref|YP_004810198.1|	-	0.19	11.7	2.9	0.34	10.9	2.9	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF4446)
BST2	PF16716.5	gi|345007346|ref|YP_004810198.1|	-	0.26	11.9	6.2	0.68	10.5	6.2	1.7	1	0	0	1	1	1	0	Bone	marrow	stromal	antigen	2
FlaC_arch	PF05377.11	gi|345007346|ref|YP_004810198.1|	-	0.31	11.5	7.4	0.72	10.3	7.4	1.6	1	0	0	1	1	1	0	Flagella	accessory	protein	C	(FlaC)
FliS	PF02561.14	gi|345007346|ref|YP_004810198.1|	-	0.37	11.1	3.1	3.2	8.0	0.6	2.4	2	0	0	2	2	2	0	Flagellar	protein	FliS
AAA_13	PF13166.6	gi|345007346|ref|YP_004810198.1|	-	0.84	8.2	4.7	1.2	7.6	4.7	1.1	1	0	0	1	1	1	0	AAA	domain
ATP-synt_E	PF05680.12	gi|345007346|ref|YP_004810198.1|	-	0.87	10.0	4.7	2.7	8.4	4.7	1.9	1	0	0	1	1	1	0	ATP	synthase	E	chain
Fzo_mitofusin	PF04799.13	gi|345007346|ref|YP_004810198.1|	-	0.88	9.1	3.3	1.6	8.2	3.3	1.3	1	0	0	1	1	1	0	fzo-like	conserved	region
Synaptobrevin	PF00957.21	gi|345007346|ref|YP_004810198.1|	-	1.9	8.3	3.4	3.9	7.3	3.4	1.4	1	0	0	1	1	1	0	Synaptobrevin
PKcGMP_CC	PF16808.5	gi|345007346|ref|YP_004810198.1|	-	2	8.3	20.5	2.9	7.8	13.4	2.9	1	1	1	2	2	2	0	Coiled-coil	N-terminus	of	cGMP-dependent	protein	kinase
UPF0449	PF15136.6	gi|345007346|ref|YP_004810198.1|	-	2.9	8.4	10.9	14	6.3	5.1	2.8	2	0	0	2	2	2	0	Uncharacterised	protein	family	UPF0449
Spc7	PF08317.11	gi|345007346|ref|YP_004810198.1|	-	3.7	6.3	14.0	0.086	11.7	6.7	1.8	2	0	0	2	2	2	0	Spc7	kinetochore	protein
TMF_DNA_bd	PF12329.8	gi|345007346|ref|YP_004810198.1|	-	5.3	7.1	15.6	0.74	9.8	11.5	1.7	2	0	0	2	2	1	0	TATA	element	modulatory	factor	1	DNA	binding
FemAB	PF02388.16	gi|345007346|ref|YP_004810198.1|	-	5.4	5.8	6.3	8.1	5.2	6.3	1.1	1	0	0	1	1	1	0	FemAB	family
DUF3552	PF12072.8	gi|345007346|ref|YP_004810198.1|	-	5.5	6.4	21.2	0.04	13.3	11.5	2.0	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF3552)
DUF5446	PF17522.2	gi|345007346|ref|YP_004810198.1|	-	6.6	7.0	12.0	23	5.3	12.0	1.9	1	0	0	1	1	1	0	Family	of	unknown	function	(DUF5446)
Med9	PF07544.13	gi|345007346|ref|YP_004810198.1|	-	6.6	6.9	12.5	45	4.2	12.5	2.3	1	1	0	1	1	1	0	RNA	polymerase	II	transcription	mediator	complex	subunit	9
Sulfatase	PF00884.23	gi|345007347|ref|YP_004810199.1|	-	0.0004	19.9	1.0	0.00048	19.6	1.0	1.2	1	0	0	1	1	1	1	Sulfatase
PglZ	PF08665.12	gi|345007347|ref|YP_004810199.1|	-	0.019	15.0	0.8	0.12	12.4	0.0	2.4	2	1	0	2	2	2	0	PglZ	domain
CARDB	PF07705.11	gi|345007348|ref|YP_004810200.1|	-	2.6e-06	27.6	4.9	3e-06	27.4	1.5	2.6	2	0	0	2	2	2	1	CARDB
HIG_1_N	PF04588.13	gi|345007349|ref|YP_004810201.1|	-	0.07	13.4	2.8	1.9	8.8	0.5	3.4	3	0	0	3	3	3	0	Hypoxia	induced	protein	conserved	region
Glycos_transf_1	PF00534.20	gi|345007350|ref|YP_004810202.1|	-	2e-30	105.6	0.0	3.1e-30	105.0	0.0	1.2	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.6	gi|345007350|ref|YP_004810202.1|	-	1.4e-24	87.1	0.0	2.2e-24	86.4	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_transf_4	PF13439.6	gi|345007350|ref|YP_004810202.1|	-	5.7e-17	62.2	0.0	1.1e-16	61.3	0.0	1.4	1	0	0	1	1	1	1	Glycosyltransferase	Family	4
Glyco_trans_4_4	PF13579.6	gi|345007350|ref|YP_004810202.1|	-	8.2e-12	45.9	0.0	9.7e-11	42.4	0.0	2.3	2	0	0	2	2	2	1	Glycosyl	transferase	4-like	domain
Glyco_trans_4_2	PF13477.6	gi|345007350|ref|YP_004810202.1|	-	4.2e-06	26.9	0.0	6.7e-06	26.2	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	transferase	4-like
Glyco_trans_1_2	PF13524.6	gi|345007350|ref|YP_004810202.1|	-	0.0023	18.3	0.0	0.013	15.9	0.0	2.1	2	0	0	2	2	2	1	Glycosyl	transferases	group	1
DUF4736	PF15883.5	gi|345007350|ref|YP_004810202.1|	-	0.0095	15.7	0.3	0.13	12.0	0.1	2.2	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF4736)
Glycos_transf_2	PF00535.26	gi|345007351|ref|YP_004810203.1|	-	4.5e-29	101.4	0.1	7.1e-29	100.8	0.1	1.3	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_tranf_2_3	PF13641.6	gi|345007351|ref|YP_004810203.1|	-	1.2e-23	84.2	0.0	1.9e-23	83.5	0.0	1.2	1	0	0	1	1	1	1	Glycosyltransferase	like	family	2
Glyco_transf_21	PF13506.6	gi|345007351|ref|YP_004810203.1|	-	2.1e-09	37.1	0.0	3.4e-09	36.4	0.0	1.2	1	0	0	1	1	1	1	Glycosyl	transferase	family	21
Glyco_tranf_2_2	PF10111.9	gi|345007351|ref|YP_004810203.1|	-	6.8e-09	35.6	0.1	0.00032	20.3	0.1	2.1	2	0	0	2	2	2	2	Glycosyltransferase	like	family	2
Glyco_trans_2_3	PF13632.6	gi|345007351|ref|YP_004810203.1|	-	3.3e-08	33.7	1.2	5.8e-08	32.9	1.2	1.3	1	0	0	1	1	1	1	Glycosyl	transferase	family	group	2
Glyco_transf_7C	PF02709.14	gi|345007351|ref|YP_004810203.1|	-	1e-05	25.1	0.0	1.8e-05	24.3	0.0	1.4	1	0	0	1	1	1	1	N-terminal	domain	of	galactosyltransferase
Glyco_tranf_2_5	PF13712.6	gi|345007351|ref|YP_004810203.1|	-	0.0031	17.2	0.0	0.029	14.0	0.0	2.1	1	1	0	1	1	1	1	Glycosyltransferase	like	family
Glyco_tranf_2_4	PF13704.6	gi|345007351|ref|YP_004810203.1|	-	0.046	14.2	0.0	0.12	12.9	0.0	1.7	1	0	0	1	1	1	0	Glycosyl	transferase	family	2
GlcNAc	PF11397.8	gi|345007351|ref|YP_004810203.1|	-	0.076	12.4	0.1	0.098	12.1	0.1	1.1	1	0	0	1	1	1	0	Glycosyltransferase	(GlcNAc)
Glycos_transf_1	PF00534.20	gi|345007352|ref|YP_004810204.1|	-	4.3e-36	124.0	0.0	6.4e-36	123.5	0.0	1.2	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.6	gi|345007352|ref|YP_004810204.1|	-	2e-34	118.9	0.0	3e-34	118.3	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_transf_4	PF13439.6	gi|345007352|ref|YP_004810204.1|	-	5.9e-18	65.4	2.1	7e-18	65.2	0.8	1.8	2	1	1	3	3	3	1	Glycosyltransferase	Family	4
Glyco_trans_4_4	PF13579.6	gi|345007352|ref|YP_004810204.1|	-	1.4e-11	45.1	0.4	4.3e-11	43.5	0.1	2.0	2	1	0	2	2	2	1	Glycosyl	transferase	4-like	domain
Glyco_trans_1_2	PF13524.6	gi|345007352|ref|YP_004810204.1|	-	2.6e-05	24.5	0.0	5.5e-05	23.5	0.0	1.5	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_4_2	PF13477.6	gi|345007352|ref|YP_004810204.1|	-	0.0017	18.4	0.1	0.0076	16.3	0.1	2.0	1	1	0	1	1	1	1	Glycosyl	transferase	4-like
baeRF_family10	PF18854.1	gi|345007352|ref|YP_004810204.1|	-	0.013	15.7	0.3	0.067	13.4	0.1	2.0	2	0	0	2	2	2	0	Bacterial	archaeo-eukaryotic	release	factor	family	10
Glyco_transf_5	PF08323.11	gi|345007352|ref|YP_004810204.1|	-	0.024	14.3	0.0	0.046	13.4	0.0	1.5	1	0	0	1	1	1	0	Starch	synthase	catalytic	domain
baeRF_family5	PF18846.1	gi|345007352|ref|YP_004810204.1|	-	0.049	13.8	0.0	0.079	13.2	0.0	1.3	1	0	0	1	1	1	0	Bacterial	archaeo-eukaryotic	release	factor	family	5
DUF3492	PF11997.8	gi|345007352|ref|YP_004810204.1|	-	0.05	13.3	0.1	0.23	11.1	0.0	1.9	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF3492)
DUF3880	PF12996.7	gi|345007352|ref|YP_004810204.1|	-	0.13	12.3	0.0	0.37	10.9	0.0	1.8	1	0	0	1	1	1	0	DUF	based	on	E.	rectale	Gene	description	(DUF3880)
DUF1616	PF07760.11	gi|345007353|ref|YP_004810205.1|	-	1.3e-72	244.7	0.9	1.6e-72	244.4	0.9	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1616)
DUF5408	PF17402.2	gi|345007353|ref|YP_004810205.1|	-	0.27	11.2	1.5	17	5.4	0.0	3.2	3	0	0	3	3	3	0	Family	of	unknown	function	(DUF5408)
CPBP	PF02517.16	gi|345007354|ref|YP_004810206.1|	-	1.5e-13	50.9	7.4	1.5e-13	50.9	7.4	2.2	2	1	0	2	2	2	1	CPBP	intramembrane	metalloprotease
dTDP_sugar_isom	PF00908.17	gi|345007355|ref|YP_004810207.1|	-	2.3e-16	59.9	0.0	2.8e-16	59.7	0.0	1.0	1	0	0	1	1	1	1	dTDP-4-dehydrorhamnose	3,5-epimerase
FdtA	PF05523.11	gi|345007355|ref|YP_004810207.1|	-	0.00034	20.3	0.0	0.00047	19.9	0.0	1.2	1	0	0	1	1	1	1	WxcM-like,	C-terminal
Cupin_2	PF07883.11	gi|345007355|ref|YP_004810207.1|	-	0.033	13.9	0.1	0.32	10.7	0.1	2.1	1	1	0	1	1	1	0	Cupin	domain
40S_S4_C	PF16121.5	gi|345007355|ref|YP_004810207.1|	-	0.09	12.4	0.0	0.23	11.1	0.0	1.6	2	0	0	2	2	2	0	40S	ribosomal	protein	S4	C-terminus
NTP_transferase	PF00483.23	gi|345007356|ref|YP_004810208.1|	-	4.1e-54	183.8	0.0	5e-54	183.5	0.0	1.1	1	0	0	1	1	1	1	Nucleotidyl	transferase
NTP_transf_3	PF12804.7	gi|345007356|ref|YP_004810208.1|	-	2e-09	38.0	0.0	2.6e-09	37.7	0.0	1.3	1	0	0	1	1	1	1	MobA-like	NTP	transferase	domain
Hexapep	PF00132.24	gi|345007356|ref|YP_004810208.1|	-	9e-06	25.2	2.1	0.0053	16.4	0.1	3.4	3	1	1	4	4	4	2	Bacterial	transferase	hexapeptide	(six	repeats)
IspD	PF01128.19	gi|345007356|ref|YP_004810208.1|	-	0.0072	16.1	0.0	0.012	15.4	0.0	1.3	1	0	0	1	1	1	1	2-C-methyl-D-erythritol	4-phosphate	cytidylyltransferase
DNA_ligase_ZBD	PF03119.16	gi|345007357|ref|YP_004810209.1|	-	5.1e-06	26.4	1.7	8.1e-06	25.8	1.7	1.4	1	0	0	1	1	1	1	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
zf-ACC	PF17848.1	gi|345007357|ref|YP_004810209.1|	-	0.002	18.2	1.1	0.0076	16.3	0.0	2.2	2	1	0	2	2	2	1	Acetyl-coA	carboxylase	zinc	finger	domain
IBR	PF01485.21	gi|345007357|ref|YP_004810209.1|	-	0.013	15.7	0.3	0.53	10.6	0.0	2.0	1	1	1	2	2	2	0	IBR	domain,	a	half	RING-finger	domain
zf_UBZ	PF18439.1	gi|345007357|ref|YP_004810209.1|	-	0.017	14.7	0.1	0.056	13.0	0.0	1.8	2	0	0	2	2	2	0	Ubiquitin-Binding	Zinc	Finger
OrfB_Zn_ribbon	PF07282.11	gi|345007357|ref|YP_004810209.1|	-	0.034	14.1	0.4	0.046	13.7	0.4	1.2	1	0	0	1	1	1	0	Putative	transposase	DNA-binding	domain
TF_Zn_Ribbon	PF08271.12	gi|345007357|ref|YP_004810209.1|	-	0.05	13.1	0.1	0.05	13.1	0.1	2.1	2	1	0	2	2	2	0	TFIIB	zinc-binding
Zn_Tnp_IS1595	PF12760.7	gi|345007357|ref|YP_004810209.1|	-	0.077	13.0	0.5	0.28	11.2	0.1	1.9	2	0	0	2	2	2	0	Transposase	zinc-ribbon	domain
zf-C2H2	PF00096.26	gi|345007357|ref|YP_004810209.1|	-	0.11	13.0	0.1	1.8	9.2	0.0	2.2	2	0	0	2	2	2	0	Zinc	finger,	C2H2	type
RmlD_sub_bind	PF04321.17	gi|345007358|ref|YP_004810210.1|	-	7.6e-71	238.5	0.0	8.4e-71	238.4	0.0	1.0	1	0	0	1	1	1	1	RmlD	substrate	binding	domain
Epimerase	PF01370.21	gi|345007358|ref|YP_004810210.1|	-	5.5e-23	81.7	0.0	8.3e-23	81.1	0.0	1.3	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
GDP_Man_Dehyd	PF16363.5	gi|345007358|ref|YP_004810210.1|	-	2.5e-11	43.5	0.0	5.3e-11	42.5	0.0	1.5	1	1	0	1	1	1	1	GDP-mannose	4,6	dehydratase
Polysacc_synt_2	PF02719.15	gi|345007358|ref|YP_004810210.1|	-	1.3e-05	24.5	0.0	8.7e-05	21.8	0.0	2.2	1	1	1	2	2	2	1	Polysaccharide	biosynthesis	protein
NAD_binding_4	PF07993.12	gi|345007358|ref|YP_004810210.1|	-	2.7e-05	23.5	0.0	0.00014	21.2	0.0	2.0	2	1	0	2	2	2	1	Male	sterility	protein
3Beta_HSD	PF01073.19	gi|345007358|ref|YP_004810210.1|	-	0.04	12.9	0.1	0.14	11.1	0.1	1.8	1	1	0	1	1	1	0	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
GDP_Man_Dehyd	PF16363.5	gi|345007359|ref|YP_004810211.1|	-	5.3e-80	269.3	0.0	6e-80	269.1	0.0	1.0	1	0	0	1	1	1	1	GDP-mannose	4,6	dehydratase
Epimerase	PF01370.21	gi|345007359|ref|YP_004810211.1|	-	4.2e-64	216.3	0.0	5.1e-64	216.0	0.0	1.1	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
3Beta_HSD	PF01073.19	gi|345007359|ref|YP_004810211.1|	-	1.5e-23	83.2	0.0	2e-23	82.8	0.0	1.1	1	0	0	1	1	1	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
RmlD_sub_bind	PF04321.17	gi|345007359|ref|YP_004810211.1|	-	3.3e-20	72.4	0.0	4.2e-20	72.0	0.0	1.1	1	0	0	1	1	1	1	RmlD	substrate	binding	domain
Polysacc_synt_2	PF02719.15	gi|345007359|ref|YP_004810211.1|	-	1.4e-19	70.4	0.0	2.2e-18	66.4	0.0	2.0	1	1	0	1	1	1	1	Polysaccharide	biosynthesis	protein
NAD_binding_4	PF07993.12	gi|345007359|ref|YP_004810211.1|	-	8e-15	54.7	0.0	1.4e-13	50.6	0.0	2.3	1	1	0	1	1	1	1	Male	sterility	protein
NAD_binding_10	PF13460.6	gi|345007359|ref|YP_004810211.1|	-	6.8e-12	45.6	0.1	1.1e-11	45.0	0.1	1.3	1	0	0	1	1	1	1	NAD(P)H-binding
NmrA	PF05368.13	gi|345007359|ref|YP_004810211.1|	-	5.9e-06	26.0	0.2	9.1e-06	25.4	0.2	1.2	1	0	0	1	1	1	1	NmrA-like	family
adh_short	PF00106.25	gi|345007359|ref|YP_004810211.1|	-	0.0017	17.9	0.0	0.064	12.7	0.0	2.6	2	1	0	2	2	2	1	short	chain	dehydrogenase
Sacchrp_dh_NADP	PF03435.18	gi|345007359|ref|YP_004810211.1|	-	0.011	16.0	0.1	0.023	15.0	0.1	1.6	1	0	0	1	1	1	0	Saccharopine	dehydrogenase	NADP	binding	domain
KR	PF08659.10	gi|345007359|ref|YP_004810211.1|	-	0.029	14.3	0.1	0.65	9.9	0.1	2.7	1	1	1	2	2	2	0	KR	domain
NUDIX	PF00293.28	gi|345007360|ref|YP_004810212.1|	-	7.5e-11	42.2	0.3	9.6e-11	41.8	0.3	1.1	1	0	0	1	1	1	1	NUDIX	domain
DUF4350	PF14258.6	gi|345007362|ref|YP_004810214.1|	-	0.0048	17.3	0.0	0.0063	16.9	0.0	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4350)
PMT	PF02366.18	gi|345007363|ref|YP_004810215.1|	-	0.01	15.4	2.5	0.012	15.3	2.5	1.1	1	0	0	1	1	1	0	Dolichyl-phosphate-mannose-protein	mannosyltransferase
DUF3487	PF11990.8	gi|345007363|ref|YP_004810215.1|	-	0.21	11.5	3.2	0.28	11.1	3.2	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3487)
OrfB_Zn_ribbon	PF07282.11	gi|345007364|ref|YP_004810216.1|	-	2.8e-23	81.6	0.9	5.5e-23	80.7	0.9	1.5	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
OrfB_IS605	PF01385.19	gi|345007364|ref|YP_004810216.1|	-	6.4e-06	26.4	0.0	1e-05	25.7	0.0	1.4	1	0	0	1	1	1	1	Probable	transposase
zf-piccolo	PF05715.13	gi|345007364|ref|YP_004810216.1|	-	0.033	14.3	0.9	0.086	13.0	0.9	1.6	1	0	0	1	1	1	0	Piccolo	Zn-finger
Rubredoxin_2	PF18073.1	gi|345007364|ref|YP_004810216.1|	-	0.2	11.4	4.6	1.4	8.8	0.3	2.5	2	0	0	2	2	2	0	Rubredoxin	metal	binding	domain
zinc_ribbon_2	PF13240.6	gi|345007364|ref|YP_004810216.1|	-	0.26	11.1	6.3	4.4	7.1	6.3	2.4	1	1	1	2	2	2	0	zinc-ribbon	domain
YdjM	PF04307.14	gi|345007365|ref|YP_004810217.1|	-	7.2e-10	38.4	10.0	1e-09	37.9	10.0	1.3	1	1	0	1	1	1	1	LexA-binding,	inner	membrane-associated	putative	hydrolase
DDE_Tnp_1	PF01609.21	gi|345007366|ref|YP_004810218.1|	-	0.031	13.9	0.1	0.085	12.5	0.1	1.7	1	1	0	1	1	1	0	Transposase	DDE	domain
RNA_POL_M_15KD	PF02150.16	gi|345007367|ref|YP_004810219.1|	-	0.12	12.3	1.5	0.26	11.2	1.5	1.5	1	0	0	1	1	1	0	RNA	polymerases	M/15	Kd	subunit
VWA_2	PF13519.6	gi|345007368|ref|YP_004810220.1|	-	5.1e-07	30.3	0.1	1.1e-06	29.2	0.1	1.5	1	0	0	1	1	1	1	von	Willebrand	factor	type	A	domain
VWA	PF00092.28	gi|345007368|ref|YP_004810220.1|	-	1.9e-06	28.3	0.1	2.6e-06	27.8	0.1	1.4	1	0	0	1	1	1	1	von	Willebrand	factor	type	A	domain
Lactamase_B_2	PF12706.7	gi|345007369|ref|YP_004810221.1|	-	2.1e-08	33.9	2.4	2.1e-08	33.9	2.4	2.2	3	0	0	3	3	3	1	Beta-lactamase	superfamily	domain
Lactamase_B	PF00753.27	gi|345007369|ref|YP_004810221.1|	-	1.4e-06	28.5	8.7	4.6e-06	26.8	8.7	1.9	1	0	0	1	1	1	1	Metallo-beta-lactamase	superfamily
SAPS	PF04499.15	gi|345007369|ref|YP_004810221.1|	-	0.75	8.5	5.1	0.99	8.1	5.1	1.3	1	0	0	1	1	1	0	SIT4	phosphatase-associated	protein
SDA1	PF05285.12	gi|345007369|ref|YP_004810221.1|	-	5.8	6.2	19.0	8.4	5.7	19.0	1.1	1	0	0	1	1	1	0	SDA1
Rrf2	PF02082.20	gi|345007370|ref|YP_004810222.1|	-	0.0012	19.1	0.0	0.0017	18.7	0.0	1.1	1	0	0	1	1	1	1	Transcriptional	regulator
SCNM1_acidic	PF15805.5	gi|345007370|ref|YP_004810222.1|	-	0.0063	16.2	0.1	0.0063	16.2	0.1	1.9	2	0	0	2	2	2	1	Acidic	C-terminal	region	of	sodium	channel	modifier	1	SCNM1
BLACT_WH	PF17778.1	gi|345007370|ref|YP_004810222.1|	-	0.042	13.9	0.0	0.09	12.8	0.0	1.5	1	0	0	1	1	1	0	Beta-lactamase	associated	winged	helix	domain
HTH_Crp_2	PF13545.6	gi|345007370|ref|YP_004810222.1|	-	0.093	12.7	0.0	0.13	12.3	0.0	1.2	1	0	0	1	1	1	0	Crp-like	helix-turn-helix	domain
GntR	PF00392.21	gi|345007370|ref|YP_004810222.1|	-	0.11	12.2	0.0	0.14	11.8	0.0	1.2	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	gntR	family
HTH_5	PF01022.20	gi|345007370|ref|YP_004810222.1|	-	0.16	11.8	0.1	0.28	11.1	0.1	1.2	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
AAA_12	PF13087.6	gi|345007371|ref|YP_004810223.1|	-	9.3e-50	169.0	0.4	1.9e-49	168.0	0.0	1.8	2	0	0	2	2	2	1	AAA	domain
AAA_11	PF13086.6	gi|345007371|ref|YP_004810223.1|	-	4.5e-29	102.0	4.1	2.2e-14	53.9	0.1	3.0	2	1	1	3	3	3	2	AAA	domain
AAA_30	PF13604.6	gi|345007371|ref|YP_004810223.1|	-	5.8e-16	58.8	0.1	1.2e-15	57.7	0.1	1.5	1	0	0	1	1	1	1	AAA	domain
Viral_helicase1	PF01443.18	gi|345007371|ref|YP_004810223.1|	-	1.7e-08	34.5	2.9	0.0085	15.9	0.0	3.6	4	0	0	4	4	4	3	Viral	(Superfamily	1)	RNA	helicase
AAA_19	PF13245.6	gi|345007371|ref|YP_004810223.1|	-	3.4e-08	33.9	0.1	1.4e-07	31.9	0.0	2.0	2	0	0	2	2	2	1	AAA	domain
UvrD_C	PF13361.6	gi|345007371|ref|YP_004810223.1|	-	4.7e-06	26.2	0.2	0.02	14.3	0.0	3.1	2	1	1	3	3	3	2	UvrD-like	helicase	C-terminal	domain
ABC_tran	PF00005.27	gi|345007371|ref|YP_004810223.1|	-	8.7e-06	26.3	0.0	3.5e-05	24.4	0.0	2.1	1	0	0	1	1	1	1	ABC	transporter
ResIII	PF04851.15	gi|345007371|ref|YP_004810223.1|	-	2.8e-05	24.2	0.3	9.9e-05	22.4	0.0	2.1	3	0	0	3	3	2	1	Type	III	restriction	enzyme,	res	subunit
AAA_16	PF13191.6	gi|345007371|ref|YP_004810223.1|	-	8.3e-05	23.0	0.1	0.00053	20.4	0.0	2.3	2	0	0	2	2	2	1	AAA	ATPase	domain
AAA	PF00004.29	gi|345007371|ref|YP_004810223.1|	-	0.00015	22.2	0.9	0.0027	18.1	0.0	3.0	3	1	0	3	3	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
DUF2075	PF09848.9	gi|345007371|ref|YP_004810223.1|	-	0.0013	18.0	0.4	0.014	14.7	0.0	2.6	3	0	0	3	3	3	1	Uncharacterized	conserved	protein	(DUF2075)
AAA_22	PF13401.6	gi|345007371|ref|YP_004810223.1|	-	0.0016	18.7	0.7	0.0078	16.5	0.0	2.5	3	1	1	4	4	3	1	AAA	domain
UvrD_C_2	PF13538.6	gi|345007371|ref|YP_004810223.1|	-	0.0036	17.1	0.0	0.017	14.9	0.0	2.1	1	1	0	1	1	1	1	UvrD-like	helicase	C-terminal	domain
IstB_IS21	PF01695.17	gi|345007371|ref|YP_004810223.1|	-	0.007	16.1	0.0	0.019	14.7	0.0	1.7	1	0	0	1	1	1	1	IstB-like	ATP	binding	protein
Helicase_RecD	PF05127.14	gi|345007371|ref|YP_004810223.1|	-	0.015	15.1	0.2	0.081	12.8	0.2	2.2	1	1	0	1	1	1	0	Helicase
AAA_28	PF13521.6	gi|345007371|ref|YP_004810223.1|	-	0.053	13.8	0.0	0.12	12.6	0.0	1.6	1	0	0	1	1	1	0	AAA	domain
RNA_helicase	PF00910.22	gi|345007371|ref|YP_004810223.1|	-	0.086	13.2	0.0	0.37	11.2	0.0	2.1	2	0	0	2	2	2	0	RNA	helicase
AAA_5	PF07728.14	gi|345007371|ref|YP_004810223.1|	-	0.14	12.1	0.0	0.46	10.5	0.0	1.8	1	0	0	1	1	1	0	AAA	domain	(dynein-related	subfamily)
PIF1	PF05970.14	gi|345007371|ref|YP_004810223.1|	-	0.16	11.1	0.0	1.6	7.8	0.0	2.2	2	0	0	2	2	2	0	PIF1-like	helicase
DDE_Tnp_1	PF01609.21	gi|345007372|ref|YP_004810224.1|	-	0.031	13.9	0.1	0.085	12.5	0.1	1.7	1	1	0	1	1	1	0	Transposase	DDE	domain
PMT_2	PF13231.6	gi|345007373|ref|YP_004810225.1|	-	2.2e-08	34.5	14.3	2.2e-08	34.5	14.3	2.0	2	0	0	2	2	2	1	Dolichyl-phosphate-mannose-protein	mannosyltransferase
PTPS_related	PF10131.9	gi|345007373|ref|YP_004810225.1|	-	0.00025	19.5	16.5	0.00025	19.5	16.5	1.5	2	0	0	2	2	2	1	6-pyruvoyl-tetrahydropterin	synthase	related	domain;	membrane	protein
DUF2206	PF09971.9	gi|345007375|ref|YP_004810227.1|	-	0.00028	19.8	0.0	0.00082	18.2	0.0	1.7	1	1	0	1	1	1	1	Predicted	membrane	protein	(DUF2206)
Glycos_transf_2	PF00535.26	gi|345007376|ref|YP_004810228.1|	-	1.6e-24	86.6	0.0	4.1e-24	85.3	0.0	1.6	2	0	0	2	2	2	1	Glycosyl	transferase	family	2
Glyco_tranf_2_3	PF13641.6	gi|345007376|ref|YP_004810228.1|	-	9.2e-08	32.2	0.3	1.2e-06	28.6	0.0	2.1	2	0	0	2	2	2	1	Glycosyltransferase	like	family	2
NTP_transf_3	PF12804.7	gi|345007376|ref|YP_004810228.1|	-	0.00058	20.3	1.2	0.053	13.9	0.1	2.4	2	0	0	2	2	2	2	MobA-like	NTP	transferase	domain
Glyco_tranf_2_4	PF13704.6	gi|345007376|ref|YP_004810228.1|	-	0.0007	20.1	0.0	0.0041	17.6	0.0	2.1	2	0	0	2	2	2	1	Glycosyl	transferase	family	2
Pec_lyase	PF09492.10	gi|345007378|ref|YP_004810230.1|	-	0.019	14.3	0.0	0.11	11.8	0.0	2.0	2	0	0	2	2	2	0	Pectic	acid	lyase
Glyco_tranf_2_3	PF13641.6	gi|345007379|ref|YP_004810231.1|	-	3.9e-22	79.3	0.2	5.3e-22	78.8	0.2	1.2	1	0	0	1	1	1	1	Glycosyltransferase	like	family	2
Glycos_transf_2	PF00535.26	gi|345007379|ref|YP_004810231.1|	-	1.5e-18	67.2	0.0	2.3e-18	66.6	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_trans_2_3	PF13632.6	gi|345007379|ref|YP_004810231.1|	-	2.2e-10	40.8	0.6	4e-10	39.9	0.6	1.4	1	0	0	1	1	1	1	Glycosyl	transferase	family	group	2
Glyco_transf_21	PF13506.6	gi|345007379|ref|YP_004810231.1|	-	1.1e-06	28.3	0.0	2e-06	27.4	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	transferase	family	21
Glyco_tranf_2_2	PF10111.9	gi|345007379|ref|YP_004810231.1|	-	4.5e-05	23.1	0.0	0.073	12.5	0.0	2.1	2	0	0	2	2	2	2	Glycosyltransferase	like	family	2
Glycos_transf_1	PF00534.20	gi|345007380|ref|YP_004810232.1|	-	5.5e-26	91.1	0.0	1.3e-25	89.9	0.0	1.6	2	0	0	2	2	2	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.6	gi|345007380|ref|YP_004810232.1|	-	1.7e-18	67.4	0.0	3.1e-18	66.5	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_transf_4	PF13439.6	gi|345007380|ref|YP_004810232.1|	-	2.2e-14	53.8	0.1	3.5e-13	49.9	0.1	2.2	2	0	0	2	2	2	1	Glycosyltransferase	Family	4
Glyco_trans_4_4	PF13579.6	gi|345007380|ref|YP_004810232.1|	-	1.3e-10	41.9	0.6	3.1e-09	37.5	0.3	2.7	2	1	1	3	3	3	1	Glycosyl	transferase	4-like	domain
Glyco_trans_4_2	PF13477.6	gi|345007380|ref|YP_004810232.1|	-	0.0018	18.3	0.3	0.0087	16.1	0.1	2.2	2	0	0	2	2	2	1	Glycosyl	transferase	4-like
Polysacc_synt_C	PF14667.6	gi|345007381|ref|YP_004810233.1|	-	3e-22	79.2	20.9	3e-22	79.2	20.9	3.8	2	1	1	3	3	3	1	Polysaccharide	biosynthesis	C-terminal	domain
Polysacc_synt_3	PF13440.6	gi|345007381|ref|YP_004810233.1|	-	1.1e-20	74.1	14.1	1.1e-20	74.1	14.1	2.3	2	1	1	3	3	3	1	Polysaccharide	biosynthesis	protein
Polysacc_synt	PF01943.17	gi|345007381|ref|YP_004810233.1|	-	6.1e-14	52.1	22.0	6.1e-14	52.1	22.0	2.8	1	1	2	3	3	3	2	Polysaccharide	biosynthesis	protein
MurJ	PF03023.14	gi|345007381|ref|YP_004810233.1|	-	1.1e-13	50.6	24.0	1.1e-13	50.6	24.0	2.2	2	1	0	2	2	2	1	Lipid	II	flippase	MurJ
MatE	PF01554.18	gi|345007381|ref|YP_004810233.1|	-	3.1e-10	40.0	4.7	3.1e-10	40.0	4.7	4.6	4	2	0	4	4	4	1	MatE
PglZ	PF08665.12	gi|345007382|ref|YP_004810234.1|	-	0.04	14.0	0.3	0.18	11.8	0.1	2.0	2	0	0	2	2	2	0	PglZ	domain
DDE_Tnp_IS66	PF03050.14	gi|345007383|ref|YP_004810235.1|	-	4.4e-49	167.5	0.2	4.4e-49	167.5	0.2	1.9	2	0	0	2	2	2	1	Transposase	IS66	family
SlyX	PF04102.12	gi|345007383|ref|YP_004810235.1|	-	0.00015	22.3	5.5	0.00052	20.6	5.5	1.9	1	0	0	1	1	1	1	SlyX
MscS_porin	PF12795.7	gi|345007383|ref|YP_004810235.1|	-	0.0008	19.0	5.1	0.0008	19.0	5.1	1.8	2	0	0	2	2	2	1	Mechanosensitive	ion	channel	porin	domain
UPF0242	PF06785.11	gi|345007383|ref|YP_004810235.1|	-	0.0026	17.9	11.2	0.0048	17.0	11.2	1.4	1	0	0	1	1	1	1	Uncharacterised	protein	family	(UPF0242)	N-terminus
DUF16	PF01519.16	gi|345007383|ref|YP_004810235.1|	-	0.0029	18.1	5.6	0.0061	17.0	5.6	1.4	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF16
zf-IS66	PF13005.7	gi|345007383|ref|YP_004810235.1|	-	0.0036	17.7	3.7	0.0036	17.7	3.7	2.6	3	0	0	3	3	1	1	zinc-finger	binding	domain	of	transposase	IS66
HemX	PF04375.14	gi|345007383|ref|YP_004810235.1|	-	0.0046	16.3	2.5	0.0074	15.6	2.5	1.2	1	0	0	1	1	1	1	HemX,	putative	uroporphyrinogen-III	C-methyltransferase
Atg14	PF10186.9	gi|345007383|ref|YP_004810235.1|	-	0.006	15.7	4.1	0.01	15.0	4.1	1.3	1	0	0	1	1	1	1	Vacuolar	sorting	38	and	autophagy-related	subunit	14
SKA1	PF07160.12	gi|345007383|ref|YP_004810235.1|	-	0.0097	15.8	0.7	0.017	15.0	0.7	1.3	1	0	0	1	1	1	1	Spindle	and	kinetochore-associated	protein	1
YkyA	PF10368.9	gi|345007383|ref|YP_004810235.1|	-	0.021	14.5	6.4	0.037	13.7	6.4	1.2	1	0	0	1	1	1	0	Putative	cell-wall	binding	lipoprotein
ATG16	PF08614.11	gi|345007383|ref|YP_004810235.1|	-	0.027	14.7	7.0	0.027	14.7	7.0	2.1	3	0	0	3	3	1	0	Autophagy	protein	16	(ATG16)
HOOK	PF05622.12	gi|345007383|ref|YP_004810235.1|	-	0.03	12.5	6.0	0.044	11.9	6.0	1.1	1	0	0	1	1	1	0	HOOK	protein
DDE_Tnp_IS240	PF13610.6	gi|345007383|ref|YP_004810235.1|	-	0.037	14.3	3.3	0.43	10.8	0.0	2.6	2	1	0	2	2	2	0	DDE	domain
AAA_23	PF13476.6	gi|345007383|ref|YP_004810235.1|	-	0.037	14.5	4.7	0.08	13.4	4.7	1.5	1	0	0	1	1	1	0	AAA	domain
Noelin-1	PF12308.8	gi|345007383|ref|YP_004810235.1|	-	0.042	13.8	2.0	0.085	12.9	0.9	1.9	2	0	0	2	2	2	0	Neurogenesis	glycoprotein
Phage_Mu_Gam	PF07352.12	gi|345007383|ref|YP_004810235.1|	-	0.048	13.6	4.8	0.087	12.7	4.8	1.4	1	0	0	1	1	1	0	Bacteriophage	Mu	Gam	like	protein
DUF3584	PF12128.8	gi|345007383|ref|YP_004810235.1|	-	0.059	10.9	6.5	0.088	10.3	6.5	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3584)
XhlA	PF10779.9	gi|345007383|ref|YP_004810235.1|	-	0.062	13.5	8.4	0.15	12.3	8.4	1.7	1	0	0	1	1	1	0	Haemolysin	XhlA
TMPIT	PF07851.13	gi|345007383|ref|YP_004810235.1|	-	0.077	12.2	3.2	0.12	11.6	3.2	1.2	1	0	0	1	1	1	0	TMPIT-like	protein
Phage_HK97_TLTM	PF06120.11	gi|345007383|ref|YP_004810235.1|	-	0.094	11.9	1.1	0.15	11.3	1.1	1.2	1	0	0	1	1	1	0	Tail	length	tape	measure	protein
Exonuc_VII_L	PF02601.15	gi|345007383|ref|YP_004810235.1|	-	0.1	12.1	1.3	0.24	10.9	1.3	1.5	1	0	0	1	1	1	0	Exonuclease	VII,	large	subunit
Fmp27_WPPW	PF10359.9	gi|345007383|ref|YP_004810235.1|	-	0.11	11.3	2.2	0.17	10.7	2.2	1.2	1	0	0	1	1	1	0	RNA	pol	II	promoter	Fmp27	protein	domain
DUF1664	PF07889.12	gi|345007383|ref|YP_004810235.1|	-	0.11	12.5	2.0	0.21	11.7	2.0	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1664)
FPP	PF05911.11	gi|345007383|ref|YP_004810235.1|	-	0.11	10.6	5.4	0.15	10.2	5.4	1.1	1	0	0	1	1	1	0	Filament-like	plant	protein,	long	coiled-coil
HSBP1	PF06825.12	gi|345007383|ref|YP_004810235.1|	-	0.18	11.7	5.5	0.45	10.4	1.1	2.4	1	1	0	2	2	2	0	Heat	shock	factor	binding	protein	1
DUF4446	PF14584.6	gi|345007383|ref|YP_004810235.1|	-	0.19	11.7	2.9	0.34	10.9	2.9	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF4446)
BST2	PF16716.5	gi|345007383|ref|YP_004810235.1|	-	0.26	11.9	6.2	0.68	10.5	6.2	1.7	1	0	0	1	1	1	0	Bone	marrow	stromal	antigen	2
FlaC_arch	PF05377.11	gi|345007383|ref|YP_004810235.1|	-	0.31	11.5	7.4	0.72	10.3	7.4	1.6	1	0	0	1	1	1	0	Flagella	accessory	protein	C	(FlaC)
FliS	PF02561.14	gi|345007383|ref|YP_004810235.1|	-	0.37	11.1	3.1	3.2	8.0	0.6	2.4	2	0	0	2	2	2	0	Flagellar	protein	FliS
AAA_13	PF13166.6	gi|345007383|ref|YP_004810235.1|	-	0.84	8.2	4.7	1.2	7.6	4.7	1.1	1	0	0	1	1	1	0	AAA	domain
ATP-synt_E	PF05680.12	gi|345007383|ref|YP_004810235.1|	-	0.87	10.0	4.7	2.7	8.4	4.7	1.9	1	0	0	1	1	1	0	ATP	synthase	E	chain
Fzo_mitofusin	PF04799.13	gi|345007383|ref|YP_004810235.1|	-	0.88	9.1	3.3	1.6	8.2	3.3	1.3	1	0	0	1	1	1	0	fzo-like	conserved	region
Synaptobrevin	PF00957.21	gi|345007383|ref|YP_004810235.1|	-	1.9	8.3	3.4	3.9	7.3	3.4	1.4	1	0	0	1	1	1	0	Synaptobrevin
PKcGMP_CC	PF16808.5	gi|345007383|ref|YP_004810235.1|	-	2	8.3	20.5	2.9	7.8	13.4	2.9	1	1	1	2	2	2	0	Coiled-coil	N-terminus	of	cGMP-dependent	protein	kinase
UPF0449	PF15136.6	gi|345007383|ref|YP_004810235.1|	-	2.9	8.4	10.9	14	6.3	5.1	2.8	2	0	0	2	2	2	0	Uncharacterised	protein	family	UPF0449
Spc7	PF08317.11	gi|345007383|ref|YP_004810235.1|	-	3.7	6.3	14.0	0.086	11.7	6.7	1.8	2	0	0	2	2	2	0	Spc7	kinetochore	protein
TMF_DNA_bd	PF12329.8	gi|345007383|ref|YP_004810235.1|	-	5.3	7.1	15.6	0.74	9.8	11.5	1.7	2	0	0	2	2	1	0	TATA	element	modulatory	factor	1	DNA	binding
FemAB	PF02388.16	gi|345007383|ref|YP_004810235.1|	-	5.4	5.8	6.3	8.1	5.2	6.3	1.1	1	0	0	1	1	1	0	FemAB	family
DUF3552	PF12072.8	gi|345007383|ref|YP_004810235.1|	-	5.5	6.4	21.2	0.04	13.3	11.5	2.0	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF3552)
DUF5446	PF17522.2	gi|345007383|ref|YP_004810235.1|	-	6.6	7.0	12.0	23	5.3	12.0	1.9	1	0	0	1	1	1	0	Family	of	unknown	function	(DUF5446)
Med9	PF07544.13	gi|345007383|ref|YP_004810235.1|	-	6.6	6.9	12.5	45	4.2	12.5	2.3	1	1	0	1	1	1	0	RNA	polymerase	II	transcription	mediator	complex	subunit	9
bPH_2	PF03703.14	gi|345007384|ref|YP_004810236.1|	-	2.1e-17	63.1	0.2	3.4e-17	62.4	0.2	1.3	1	0	0	1	1	1	1	Bacterial	PH	domain
DUF1180	PF06679.12	gi|345007384|ref|YP_004810236.1|	-	0.0053	17.2	0.6	0.0095	16.4	0.6	1.4	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1180)
DUF2975	PF11188.8	gi|345007384|ref|YP_004810236.1|	-	1.1	9.1	6.1	1.7	8.5	6.1	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2975)
bPH_2	PF03703.14	gi|345007385|ref|YP_004810237.1|	-	2.7e-50	168.5	6.5	1.1e-21	76.8	0.3	3.3	3	0	0	3	3	3	3	Bacterial	PH	domain
bPH_4	PF06713.11	gi|345007385|ref|YP_004810237.1|	-	0.011	15.8	0.0	0.53	10.4	0.0	2.8	3	0	0	3	3	3	0	Bacterial	PH	domain
bPH_5	PF10882.8	gi|345007385|ref|YP_004810237.1|	-	0.034	14.2	0.0	3.1	7.9	0.0	2.9	3	0	0	3	3	3	0	Bacterial	PH	domain
DUF4213	PF13938.6	gi|345007385|ref|YP_004810237.1|	-	0.056	13.7	0.1	1.6	9.0	0.1	2.4	2	0	0	2	2	2	0	Putative	heavy-metal	chelation
Cdc6_C	PF09079.11	gi|345007386|ref|YP_004810238.1|	-	6e-17	61.4	0.0	1.4e-16	60.3	0.0	1.6	1	0	0	1	1	1	1	CDC6,	C	terminal	winged	helix	domain
AAA_22	PF13401.6	gi|345007386|ref|YP_004810238.1|	-	2.4e-08	34.3	0.0	6.1e-08	33.0	0.0	1.6	1	0	0	1	1	1	1	AAA	domain
AAA_16	PF13191.6	gi|345007386|ref|YP_004810238.1|	-	2.8e-07	31.1	0.3	5.4e-05	23.6	0.0	2.8	2	1	0	2	2	2	1	AAA	ATPase	domain
NACHT	PF05729.12	gi|345007386|ref|YP_004810238.1|	-	3e-06	27.2	0.0	6e-06	26.3	0.0	1.5	1	0	0	1	1	1	1	NACHT	domain
AAA	PF00004.29	gi|345007386|ref|YP_004810238.1|	-	0.00029	21.3	0.0	0.00064	20.2	0.0	1.6	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
Phage-MuB_C	PF09077.11	gi|345007386|ref|YP_004810238.1|	-	0.0056	16.5	0.1	0.018	14.9	0.1	1.8	1	0	0	1	1	1	1	Mu	B	transposition	protein,	C	terminal
GMC_oxred_C	PF05199.13	gi|345007388|ref|YP_004810240.1|	-	2.1e-22	80.2	0.6	5.1e-22	79.0	0.2	1.9	2	0	0	2	2	1	1	GMC	oxidoreductase
GMC_oxred_N	PF00732.19	gi|345007388|ref|YP_004810240.1|	-	1.2e-13	51.1	0.0	1.7e-13	50.6	0.0	1.2	1	0	0	1	1	1	1	GMC	oxidoreductase
DAO	PF01266.24	gi|345007388|ref|YP_004810240.1|	-	1.4e-13	51.2	2.1	2.2e-12	47.3	0.8	2.8	2	1	0	2	2	2	1	FAD	dependent	oxidoreductase
FAD_binding_3	PF01494.19	gi|345007388|ref|YP_004810240.1|	-	3.1e-09	36.6	0.8	3.1e-06	26.7	0.0	2.2	2	0	0	2	2	2	2	FAD	binding	domain
FAD_binding_2	PF00890.24	gi|345007388|ref|YP_004810240.1|	-	5.3e-08	32.4	0.1	6.7e-05	22.1	0.1	2.2	2	0	0	2	2	2	2	FAD	binding	domain
NAD_binding_8	PF13450.6	gi|345007388|ref|YP_004810240.1|	-	1.3e-07	31.7	0.1	3.4e-07	30.4	0.1	1.7	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
Pyr_redox_2	PF07992.14	gi|345007388|ref|YP_004810240.1|	-	3.5e-06	26.5	0.0	8.1e-05	22.0	0.0	2.4	3	0	0	3	3	3	1	Pyridine	nucleotide-disulphide	oxidoreductase
HI0933_like	PF03486.14	gi|345007388|ref|YP_004810240.1|	-	3.8e-06	25.9	0.1	3.4e-05	22.7	0.1	2.0	2	0	0	2	2	2	1	HI0933-like	protein
FAD_oxidored	PF12831.7	gi|345007388|ref|YP_004810240.1|	-	0.00015	21.3	0.1	0.001	18.6	0.6	2.0	2	0	0	2	2	2	1	FAD	dependent	oxidoreductase
Pyr_redox_3	PF13738.6	gi|345007388|ref|YP_004810240.1|	-	0.00057	19.2	0.0	0.0011	18.3	0.0	1.4	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Thi4	PF01946.17	gi|345007388|ref|YP_004810240.1|	-	0.00079	18.7	0.0	0.0014	17.9	0.0	1.3	1	0	0	1	1	1	1	Thi4	family
Lycopene_cycl	PF05834.12	gi|345007388|ref|YP_004810240.1|	-	0.00088	18.4	0.0	0.0012	17.9	0.0	1.2	1	0	0	1	1	1	1	Lycopene	cyclase	protein
Pyr_redox	PF00070.27	gi|345007388|ref|YP_004810240.1|	-	0.0037	17.8	0.0	0.057	14.0	0.0	2.5	3	0	0	3	3	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
GIDA	PF01134.22	gi|345007388|ref|YP_004810240.1|	-	0.0044	16.2	0.0	0.0075	15.4	0.0	1.3	1	0	0	1	1	1	1	Glucose	inhibited	division	protein	A
UDPG_MGDP_dh_N	PF03721.14	gi|345007388|ref|YP_004810240.1|	-	0.013	15.1	0.1	0.022	14.3	0.1	1.3	1	0	0	1	1	1	0	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
ApbA	PF02558.16	gi|345007388|ref|YP_004810240.1|	-	0.017	14.8	0.0	0.033	13.8	0.0	1.5	1	0	0	1	1	1	0	Ketopantoate	reductase	PanE/ApbA
3HCDH_N	PF02737.18	gi|345007388|ref|YP_004810240.1|	-	0.049	13.5	0.0	0.077	12.9	0.0	1.3	1	0	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
Rossmann-like	PF10727.9	gi|345007388|ref|YP_004810240.1|	-	0.062	13.2	0.0	0.12	12.3	0.0	1.4	1	0	0	1	1	1	0	Rossmann-like	domain
Amino_oxidase	PF01593.24	gi|345007388|ref|YP_004810240.1|	-	0.078	12.3	1.0	0.16	11.2	0.2	1.8	2	0	0	2	2	2	0	Flavin	containing	amine	oxidoreductase
NAD_binding_7	PF13241.6	gi|345007388|ref|YP_004810240.1|	-	0.19	12.2	0.0	0.42	11.1	0.0	1.5	1	0	0	1	1	1	0	Putative	NAD(P)-binding
Trp_halogenase	PF04820.14	gi|345007388|ref|YP_004810240.1|	-	0.2	10.4	0.2	0.35	9.7	0.0	1.4	2	0	0	2	2	2	0	Tryptophan	halogenase
TAT_signal	PF10518.9	gi|345007389|ref|YP_004810241.1|	-	0.00011	21.9	0.5	0.0041	16.9	0.6	2.5	2	0	0	2	2	2	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
Gluconate_2-dh3	PF13618.6	gi|345007389|ref|YP_004810241.1|	-	0.0088	16.3	0.0	0.019	15.2	0.0	1.6	1	1	0	1	1	1	1	Gluconate	2-dehydrogenase	subunit	3
DUF3180	PF11377.8	gi|345007390|ref|YP_004810242.1|	-	0.003	17.7	4.9	0.003	17.7	4.9	4.1	1	1	2	4	4	4	2	Protein	of	unknown	function	(DUF3180)
Stn1	PF10451.9	gi|345007390|ref|YP_004810242.1|	-	3	6.7	4.3	0.63	9.0	0.9	1.5	2	0	0	2	2	2	0	Telomere	regulation	protein	Stn1
HalOD1	PF18545.1	gi|345007391|ref|YP_004810243.1|	-	1.3e-18	67.0	2.5	1.6e-18	66.7	2.5	1.1	1	0	0	1	1	1	1	Halobacterial	output	domain	1
PadR	PF03551.14	gi|345007393|ref|YP_004810245.1|	-	6.9e-10	38.7	0.0	8.2e-10	38.5	0.0	1.1	1	0	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
FUR	PF01475.19	gi|345007393|ref|YP_004810245.1|	-	0.00059	20.0	0.0	0.00074	19.7	0.0	1.1	1	0	0	1	1	1	1	Ferric	uptake	regulator	family
HTH_45	PF14947.6	gi|345007393|ref|YP_004810245.1|	-	0.18	11.8	0.0	0.24	11.4	0.0	1.3	1	0	0	1	1	1	0	Winged	helix-turn-helix
HTH_20	PF12840.7	gi|345007395|ref|YP_004810247.1|	-	0.0014	18.6	0.2	0.19	11.8	0.0	2.4	2	0	0	2	2	2	2	Helix-turn-helix	domain
DDE_3	PF13358.6	gi|345007396|ref|YP_004810248.1|	-	2.2e-26	92.3	0.0	3.8e-26	91.6	0.0	1.4	1	0	0	1	1	1	1	DDE	superfamily	endonuclease
HTH_32	PF13565.6	gi|345007396|ref|YP_004810248.1|	-	5.7e-15	55.7	1.1	3.1e-14	53.3	0.6	2.5	3	0	0	3	3	3	1	Homeodomain-like	domain
HTH_23	PF13384.6	gi|345007396|ref|YP_004810248.1|	-	2.3e-12	46.3	0.1	8.9e-11	41.3	0.0	2.8	2	1	0	2	2	2	1	Homeodomain-like	domain
HTH_29	PF13551.6	gi|345007396|ref|YP_004810248.1|	-	6.1e-12	45.4	0.5	1.8e-11	43.9	0.5	1.8	2	0	0	2	2	2	1	Winged	helix-turn	helix
HTH_28	PF13518.6	gi|345007396|ref|YP_004810248.1|	-	3.7e-05	23.8	0.2	0.00022	21.3	0.1	2.3	2	0	0	2	2	2	1	Helix-turn-helix	domain
Terminase_5	PF06056.12	gi|345007396|ref|YP_004810248.1|	-	0.02	14.8	0.0	0.067	13.1	0.0	1.9	1	0	0	1	1	1	0	Putative	ATPase	subunit	of	terminase	(gpP-like)
GDE_N	PF12439.8	gi|345007396|ref|YP_004810248.1|	-	0.07	12.5	0.2	0.13	11.7	0.2	1.3	1	0	0	1	1	1	0	Glycogen	debranching	enzyme	N	terminal
HTH_Tnp_Tc3_2	PF01498.18	gi|345007396|ref|YP_004810248.1|	-	0.081	13.2	0.0	0.2	11.9	0.0	1.7	1	0	0	1	1	1	0	Transposase
CRF	PF00473.17	gi|345007397|ref|YP_004810249.1|	-	0.008	16.2	0.1	0.017	15.2	0.1	1.5	1	0	0	1	1	1	1	Corticotropin-releasing	factor	family
HTH_11	PF08279.12	gi|345007397|ref|YP_004810249.1|	-	0.034	14.1	0.1	0.074	13.0	0.1	1.6	1	0	0	1	1	1	0	HTH	domain
DUF2398	PF09661.10	gi|345007397|ref|YP_004810249.1|	-	0.086	12.1	0.1	0.11	11.7	0.1	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2398)
DDE_Tnp_1	PF01609.21	gi|345007398|ref|YP_004810250.1|	-	0.027	14.1	0.1	0.14	11.8	0.0	2.1	1	1	0	1	1	1	0	Transposase	DDE	domain
ThiF	PF00899.21	gi|345007400|ref|YP_004810252.1|	-	1.9e-26	93.0	0.0	2.7e-26	92.4	0.0	1.1	1	0	0	1	1	1	1	ThiF	family
ApbA	PF02558.16	gi|345007400|ref|YP_004810252.1|	-	0.013	15.2	0.1	0.021	14.5	0.1	1.3	1	0	0	1	1	1	0	Ketopantoate	reductase	PanE/ApbA
2-Hacid_dh_C	PF02826.19	gi|345007400|ref|YP_004810252.1|	-	0.021	14.2	0.1	0.047	13.0	0.1	1.5	1	0	0	1	1	1	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
UDPG_MGDP_dh_N	PF03721.14	gi|345007400|ref|YP_004810252.1|	-	0.03	13.9	0.0	0.049	13.2	0.0	1.3	1	0	0	1	1	1	0	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
Rossmann-like	PF10727.9	gi|345007400|ref|YP_004810252.1|	-	0.042	13.7	0.1	0.1	12.4	0.1	1.7	1	0	0	1	1	1	0	Rossmann-like	domain
NPV_P10	PF05531.12	gi|345007402|ref|YP_004810254.1|	-	0.002	18.6	0.3	2.2	8.8	0.2	2.2	1	1	1	2	2	2	2	Nucleopolyhedrovirus	P10	protein
AIP3	PF03915.13	gi|345007402|ref|YP_004810254.1|	-	0.015	14.4	0.4	0.067	12.3	0.4	1.8	1	1	0	1	1	1	0	Actin	interacting	protein	3
DUF1664	PF07889.12	gi|345007402|ref|YP_004810254.1|	-	0.089	12.8	0.1	1.8	8.6	0.0	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1664)
Phage_int_SAM_5	PF13102.6	gi|345007403|ref|YP_004810255.1|	-	5.1e-07	29.9	0.0	2e-06	28.1	0.0	1.9	1	1	0	1	1	1	1	Phage	integrase	SAM-like	domain
Phage_int_SAM_1	PF02899.17	gi|345007403|ref|YP_004810255.1|	-	0.0016	18.7	0.2	0.12	12.7	0.0	3.2	4	0	0	4	4	4	1	Phage	integrase,	N-terminal	SAM-like	domain
Phage_integrase	PF00589.22	gi|345007403|ref|YP_004810255.1|	-	0.02	14.7	0.0	0.14	11.9	0.0	2.2	1	1	0	1	1	1	0	Phage	integrase	family
AAA_31	PF13614.6	gi|345007405|ref|YP_004810257.1|	-	1.1e-28	100.3	0.0	1.6e-28	99.8	0.0	1.1	1	0	0	1	1	1	1	AAA	domain
CbiA	PF01656.23	gi|345007405|ref|YP_004810257.1|	-	8.6e-11	42.0	0.0	1.8e-10	40.9	0.0	1.6	1	1	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
ParA	PF10609.9	gi|345007405|ref|YP_004810257.1|	-	2.6e-08	33.6	0.3	1.8e-07	30.9	0.1	1.9	2	0	0	2	2	2	1	NUBPL	iron-transfer	P-loop	NTPase
MipZ	PF09140.11	gi|345007405|ref|YP_004810257.1|	-	8.6e-07	28.5	0.3	7.5e-05	22.1	0.3	2.8	2	1	0	2	2	2	1	ATPase	MipZ
CBP_BcsQ	PF06564.12	gi|345007405|ref|YP_004810257.1|	-	2e-06	27.5	0.0	3.5e-06	26.7	0.0	1.3	1	0	0	1	1	1	1	Cellulose	biosynthesis	protein	BcsQ
ArsA_ATPase	PF02374.15	gi|345007405|ref|YP_004810257.1|	-	0.00014	21.2	0.0	0.0018	17.5	0.0	2.4	3	0	0	3	3	3	1	Anion-transporting	ATPase
VirC1	PF07015.11	gi|345007405|ref|YP_004810257.1|	-	0.0019	17.6	0.0	0.5	9.6	0.0	2.2	2	0	0	2	2	2	2	VirC1	protein
CLP1_P	PF16575.5	gi|345007405|ref|YP_004810257.1|	-	0.005	16.7	0.1	0.015	15.1	0.0	1.8	2	0	0	2	2	2	1	mRNA	cleavage	and	polyadenylation	factor	CLP1	P-loop
Fer4_NifH	PF00142.18	gi|345007405|ref|YP_004810257.1|	-	0.0096	15.4	0.0	0.31	10.4	0.0	2.3	2	0	0	2	2	2	1	4Fe-4S	iron	sulfur	cluster	binding	proteins,	NifH/frxC	family
APS_kinase	PF01583.20	gi|345007405|ref|YP_004810257.1|	-	0.0096	15.8	0.2	0.024	14.5	0.1	1.6	2	0	0	2	2	2	1	Adenylylsulphate	kinase
SRP54	PF00448.22	gi|345007405|ref|YP_004810257.1|	-	0.11	12.1	0.1	4.2	6.9	0.0	2.4	2	0	0	2	2	2	0	SRP54-type	protein,	GTPase	domain
HTH_23	PF13384.6	gi|345007407|ref|YP_004810259.1|	-	6.7e-06	25.7	0.3	2.8e-05	23.8	0.0	2.1	3	0	0	3	3	3	1	Homeodomain-like	domain
HTH_28	PF13518.6	gi|345007407|ref|YP_004810259.1|	-	8.7e-05	22.6	2.3	0.00011	22.3	0.0	2.3	2	1	1	3	3	2	1	Helix-turn-helix	domain
MarR_2	PF12802.7	gi|345007407|ref|YP_004810259.1|	-	0.00011	22.0	0.4	0.00026	20.8	0.3	1.7	1	1	1	2	2	2	1	MarR	family
HTH_1	PF00126.27	gi|345007407|ref|YP_004810259.1|	-	0.00061	19.7	0.5	0.0017	18.2	0.1	1.9	2	0	0	2	2	2	1	Bacterial	regulatory	helix-turn-helix	protein,	lysR	family
Fe_dep_repress	PF01325.19	gi|345007407|ref|YP_004810259.1|	-	0.0013	18.9	0.0	0.0099	16.1	0.0	2.2	2	0	0	2	2	2	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
Rrf2	PF02082.20	gi|345007407|ref|YP_004810259.1|	-	0.0057	17.0	0.0	0.063	13.6	0.0	2.3	2	0	0	2	2	2	1	Transcriptional	regulator
HTH_Crp_2	PF13545.6	gi|345007407|ref|YP_004810259.1|	-	0.0063	16.5	0.0	0.021	14.8	0.0	1.8	2	0	0	2	2	2	1	Crp-like	helix-turn-helix	domain
TrmB	PF01978.19	gi|345007407|ref|YP_004810259.1|	-	0.0077	16.1	0.0	0.014	15.3	0.0	1.4	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
GntR	PF00392.21	gi|345007407|ref|YP_004810259.1|	-	0.0084	15.7	0.1	0.035	13.8	0.0	2.0	2	0	0	2	2	2	1	Bacterial	regulatory	proteins,	gntR	family
HTH_30	PF13556.6	gi|345007407|ref|YP_004810259.1|	-	0.013	15.3	0.1	0.024	14.4	0.1	1.5	1	0	0	1	1	1	0	PucR	C-terminal	helix-turn-helix	domain
HTH_24	PF13412.6	gi|345007407|ref|YP_004810259.1|	-	0.013	15.0	0.0	0.027	14.0	0.0	1.5	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
RPA_C	PF08784.11	gi|345007407|ref|YP_004810259.1|	-	0.041	14.6	0.0	0.08	13.6	0.0	1.5	1	1	0	1	1	1	0	Replication	protein	A	C	terminal
HTH_Tnp_ISL3	PF13542.6	gi|345007407|ref|YP_004810259.1|	-	0.052	13.0	0.3	0.19	11.2	0.1	1.9	2	0	0	2	2	2	0	Helix-turn-helix	domain	of	transposase	family	ISL3
DUF2250	PF10007.9	gi|345007407|ref|YP_004810259.1|	-	0.061	13.4	0.0	0.11	12.7	0.0	1.3	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
HTH_IclR	PF09339.10	gi|345007407|ref|YP_004810259.1|	-	0.18	11.7	0.2	0.41	10.5	0.0	1.7	2	0	0	2	2	2	0	IclR	helix-turn-helix	domain
LPD11	PF18824.1	gi|345007407|ref|YP_004810259.1|	-	0.4	10.8	2.1	12	6.0	0.5	2.3	1	1	1	2	2	2	0	Large	polyvalent	protein-associated	domain	11
NTP_transf_5	PF14907.6	gi|345007408|ref|YP_004810260.1|	-	5.1e-08	32.9	0.1	7e-08	32.4	0.1	1.2	1	0	0	1	1	1	1	Uncharacterised	nucleotidyltransferase
AbiEii	PF08843.11	gi|345007408|ref|YP_004810260.1|	-	0.00063	19.8	0.2	0.0068	16.4	0.0	2.1	2	0	0	2	2	2	1	Nucleotidyl	transferase	AbiEii	toxin,	Type	IV	TA	system
Propep_M14	PF02244.16	gi|345007408|ref|YP_004810260.1|	-	0.009	16.4	0.0	0.031	14.7	0.0	1.9	2	0	0	2	2	2	1	Carboxypeptidase	activation	peptide
GrpB	PF04229.14	gi|345007408|ref|YP_004810260.1|	-	0.036	14.3	0.0	0.074	13.3	0.0	1.5	1	0	0	1	1	1	0	GrpB	protein
TRAM	PF01938.20	gi|345007410|ref|YP_004810262.1|	-	1.4e-15	57.0	1.3	2.1e-15	56.5	1.3	1.3	1	0	0	1	1	1	1	TRAM	domain
PIN	PF01850.21	gi|345007412|ref|YP_004810264.1|	-	0.00019	21.9	0.0	0.00075	20.0	0.0	1.9	2	0	0	2	2	2	1	PIN	domain
HTH_28	PF13518.6	gi|345007413|ref|YP_004810265.1|	-	0.077	13.1	0.0	0.31	11.2	0.0	2.1	2	0	0	2	2	2	0	Helix-turn-helix	domain
Nup54	PF13874.6	gi|345007413|ref|YP_004810265.1|	-	0.28	11.3	0.8	9.5	6.3	0.0	2.7	2	1	1	3	3	3	0	Nucleoporin	complex	subunit	54
DDE_Tnp_1	PF01609.21	gi|345007415|ref|YP_004810267.1|	-	6.9e-33	114.1	0.3	9e-33	113.7	0.3	1.2	1	0	0	1	1	1	1	Transposase	DDE	domain
DDE_Tnp_1_4	PF13701.6	gi|345007415|ref|YP_004810267.1|	-	0.0083	14.4	0.1	0.028	12.7	0.0	1.7	1	1	1	2	2	2	1	Transposase	DDE	domain	group	1
Corona_3	PF04694.12	gi|345007415|ref|YP_004810267.1|	-	0.043	14.2	0.0	0.11	12.9	0.0	1.6	1	0	0	1	1	1	0	Coronavirus	ORF3	protein
DDE_Tnp_1	PF01609.21	gi|345007416|ref|YP_004810268.1|	-	5.1e-14	52.4	6.6	4.9e-13	49.2	6.6	2.1	1	1	0	1	1	1	1	Transposase	DDE	domain
DDE_Tnp_1_3	PF13612.6	gi|345007416|ref|YP_004810268.1|	-	0.00021	21.4	0.2	0.00034	20.7	0.2	1.3	1	0	0	1	1	1	1	Transposase	DDE	domain
DUF772	PF05598.11	gi|345007416|ref|YP_004810268.1|	-	0.00045	20.2	0.1	0.0013	18.7	0.1	1.8	1	0	0	1	1	1	1	Transposase	domain	(DUF772)
DDE_Tnp_1_2	PF13586.6	gi|345007416|ref|YP_004810268.1|	-	0.0043	17.4	0.9	0.0081	16.5	0.3	1.8	2	0	0	2	2	2	1	Transposase	DDE	domain
TPR_11	PF13414.6	gi|345007417|ref|YP_004810269.1|	-	4.5e-07	29.5	2.2	0.0038	16.9	0.0	3.4	3	0	0	3	3	3	1	TPR	repeat
TPR_14	PF13428.6	gi|345007417|ref|YP_004810269.1|	-	7.3e-05	23.3	7.6	0.0035	18.0	0.0	4.6	3	1	1	4	4	4	2	Tetratricopeptide	repeat
TPR_16	PF13432.6	gi|345007417|ref|YP_004810269.1|	-	0.00018	22.1	2.3	0.0021	18.7	0.8	3.2	2	1	0	2	2	1	1	Tetratricopeptide	repeat
BTAD	PF03704.17	gi|345007417|ref|YP_004810269.1|	-	0.00054	20.4	1.3	0.09	13.2	0.5	3.3	2	1	1	3	3	3	1	Bacterial	transcriptional	activator	domain
TPR_6	PF13174.6	gi|345007417|ref|YP_004810269.1|	-	0.00065	20.2	1.1	0.71	10.6	0.0	3.3	3	0	0	3	3	3	1	Tetratricopeptide	repeat
TPR_2	PF07719.17	gi|345007417|ref|YP_004810269.1|	-	0.00088	19.2	5.9	1.1	9.5	0.0	4.0	4	0	0	4	4	4	1	Tetratricopeptide	repeat
zf-Di19	PF05605.12	gi|345007417|ref|YP_004810269.1|	-	0.0018	18.5	0.2	0.0042	17.3	0.2	1.6	1	0	0	1	1	1	1	Drought	induced	19	protein	(Di19),	zinc-binding
TPR_10	PF13374.6	gi|345007417|ref|YP_004810269.1|	-	0.0022	17.8	2.4	3.7	7.5	0.1	3.5	3	0	0	3	3	3	2	Tetratricopeptide	repeat
TPR_8	PF13181.6	gi|345007417|ref|YP_004810269.1|	-	0.0045	17.1	0.2	4.1	7.9	0.0	3.0	3	0	0	3	3	2	1	Tetratricopeptide	repeat
zf-C2H2	PF00096.26	gi|345007417|ref|YP_004810269.1|	-	0.0053	17.1	0.1	0.01	16.3	0.1	1.5	1	0	0	1	1	1	1	Zinc	finger,	C2H2	type
NARP1	PF12569.8	gi|345007417|ref|YP_004810269.1|	-	0.0054	15.7	0.0	0.01	14.8	0.0	1.3	1	0	0	1	1	1	1	NMDA	receptor-regulated	protein	1
zf-C2H2_4	PF13894.6	gi|345007417|ref|YP_004810269.1|	-	0.0054	17.5	0.1	0.014	16.2	0.1	1.7	1	0	0	1	1	1	1	C2H2-type	zinc	finger
TPR_12	PF13424.6	gi|345007417|ref|YP_004810269.1|	-	0.0067	16.7	2.6	0.029	14.7	0.6	3.1	2	1	1	3	3	3	1	Tetratricopeptide	repeat
TPR_19	PF14559.6	gi|345007417|ref|YP_004810269.1|	-	0.0079	16.7	1.0	1.1	9.9	0.0	3.1	3	0	0	3	3	2	1	Tetratricopeptide	repeat
SHNi-TPR	PF10516.9	gi|345007417|ref|YP_004810269.1|	-	0.028	13.9	0.3	0.56	9.7	0.2	2.7	2	0	0	2	2	2	0	SHNi-TPR
Toxin_25	PF08095.11	gi|345007417|ref|YP_004810269.1|	-	0.034	14.1	0.6	2.7	8.0	0.1	2.5	2	0	0	2	2	2	0	Hefutoxin	family
Porphobil_deam	PF01379.20	gi|345007417|ref|YP_004810269.1|	-	0.047	13.2	0.4	0.071	12.6	0.4	1.2	1	0	0	1	1	1	0	Porphobilinogen	deaminase,	dipyromethane	cofactor	binding	domain
zf-C2H2_9	PF16293.5	gi|345007417|ref|YP_004810269.1|	-	0.049	13.5	1.1	0.096	12.5	0.0	2.1	3	0	0	3	3	2	0	C2H2	type	zinc-finger	(1	copy)
zf-C2H2_jaz	PF12171.8	gi|345007417|ref|YP_004810269.1|	-	0.057	13.7	0.0	0.12	12.7	0.0	1.5	1	0	0	1	1	1	0	Zinc-finger	double-stranded	RNA-binding
FOXP-CC	PF16159.5	gi|345007417|ref|YP_004810269.1|	-	0.06	14.0	0.9	0.38	11.4	0.1	2.8	4	0	0	4	4	3	0	FOXP	coiled-coil	domain
zf-C2HC_2	PF13913.6	gi|345007417|ref|YP_004810269.1|	-	0.073	13.0	0.1	0.17	11.9	0.1	1.5	1	0	0	1	1	1	0	zinc-finger	of	a	C2HC-type
LEM	PF03020.15	gi|345007417|ref|YP_004810269.1|	-	0.13	11.8	0.0	0.33	10.5	0.0	1.7	1	0	0	1	1	1	0	LEM	domain
TPR_7	PF13176.6	gi|345007417|ref|YP_004810269.1|	-	0.31	11.1	3.2	1.8	8.8	0.4	3.4	3	1	0	3	3	2	0	Tetratricopeptide	repeat
Calci_bind_CcbP	PF11535.8	gi|345007418|ref|YP_004810270.1|	-	1.8e-42	144.1	0.5	2.1e-42	143.9	0.5	1.0	1	0	0	1	1	1	1	Calcium	binding
ResIII	PF04851.15	gi|345007419|ref|YP_004810271.1|	-	3.2e-23	82.6	0.0	1.2e-22	80.7	0.0	1.9	2	0	0	2	2	2	1	Type	III	restriction	enzyme,	res	subunit
ERCC3_RAD25_C	PF16203.5	gi|345007419|ref|YP_004810271.1|	-	1.2e-22	80.3	0.3	1.9e-22	79.7	0.3	1.2	1	0	0	1	1	1	1	ERCC3/RAD25/XPB	C-terminal	helicase
Helicase_C	PF00271.31	gi|345007419|ref|YP_004810271.1|	-	1.6e-17	63.9	0.1	1.6e-17	63.9	0.1	2.1	3	0	0	3	3	3	1	Helicase	conserved	C-terminal	domain
XPB_DRD	PF18458.1	gi|345007419|ref|YP_004810271.1|	-	3.4e-12	46.1	1.7	1.7e-11	43.8	1.7	2.3	1	0	0	1	1	1	1	Xeroderma	pigmentosum	group	B	helicase	damage	recognition	domain
DEAD	PF00270.29	gi|345007419|ref|YP_004810271.1|	-	3.3e-08	33.5	0.0	7.6e-08	32.3	0.0	1.6	1	0	0	1	1	1	1	DEAD/DEAH	box	helicase
IstB_IS21	PF01695.17	gi|345007419|ref|YP_004810271.1|	-	0.019	14.7	0.0	0.12	12.1	0.0	2.2	2	0	0	2	2	2	0	IstB-like	ATP	binding	protein
Helicase_C_2	PF13307.6	gi|345007419|ref|YP_004810271.1|	-	0.17	12.1	0.3	5.1	7.2	0.0	2.7	2	1	1	3	3	3	0	Helicase	C-terminal	domain
DUF790	PF05626.11	gi|345007420|ref|YP_004810272.1|	-	1.6e-137	458.4	0.0	1.9e-137	458.2	0.0	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF790)
HTH_23	PF13384.6	gi|345007421|ref|YP_004810273.1|	-	8.8e-05	22.2	0.0	0.00033	20.3	0.0	2.0	1	0	0	1	1	1	1	Homeodomain-like	domain
MarR_2	PF12802.7	gi|345007421|ref|YP_004810273.1|	-	0.00012	21.8	0.1	0.00032	20.5	0.1	1.7	1	1	0	1	1	1	1	MarR	family
GntR	PF00392.21	gi|345007421|ref|YP_004810273.1|	-	0.0032	17.1	0.0	0.048	13.3	0.0	2.3	2	0	0	2	2	2	1	Bacterial	regulatory	proteins,	gntR	family
HTH_1	PF00126.27	gi|345007421|ref|YP_004810273.1|	-	0.0039	17.1	0.2	0.015	15.2	0.0	1.9	2	0	0	2	2	2	1	Bacterial	regulatory	helix-turn-helix	protein,	lysR	family
Rrf2	PF02082.20	gi|345007421|ref|YP_004810273.1|	-	0.0043	17.4	0.0	0.11	12.9	0.0	2.4	2	0	0	2	2	2	1	Transcriptional	regulator
HTH_28	PF13518.6	gi|345007421|ref|YP_004810273.1|	-	0.0044	17.1	1.6	0.0087	16.2	0.0	2.3	3	0	0	3	3	3	1	Helix-turn-helix	domain
Fe_dep_repress	PF01325.19	gi|345007421|ref|YP_004810273.1|	-	0.005	17.0	0.0	0.022	14.9	0.0	2.0	2	0	0	2	2	2	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
TrmB	PF01978.19	gi|345007421|ref|YP_004810273.1|	-	0.015	15.2	0.0	0.029	14.3	0.0	1.4	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
RPA_C	PF08784.11	gi|345007421|ref|YP_004810273.1|	-	0.02	15.6	0.0	0.036	14.7	0.0	1.5	1	0	0	1	1	1	0	Replication	protein	A	C	terminal
DUF2250	PF10007.9	gi|345007421|ref|YP_004810273.1|	-	0.028	14.5	0.0	0.046	13.8	0.0	1.3	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
HTH_Crp_2	PF13545.6	gi|345007421|ref|YP_004810273.1|	-	0.039	13.9	0.0	0.12	12.4	0.0	1.8	2	0	0	2	2	2	0	Crp-like	helix-turn-helix	domain
HTH_24	PF13412.6	gi|345007421|ref|YP_004810273.1|	-	0.05	13.2	0.0	0.09	12.4	0.0	1.4	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
LPD11	PF18824.1	gi|345007421|ref|YP_004810273.1|	-	0.5	10.5	2.2	18	5.5	0.4	2.3	1	1	1	2	2	2	0	Large	polyvalent	protein-associated	domain	11
LVIVD	PF08309.11	gi|345007422|ref|YP_004810274.1|	-	0.13	11.6	0.3	0.26	10.7	0.3	1.5	1	0	0	1	1	1	0	LVIVD	repeat
CorA	PF01544.18	gi|345007425|ref|YP_004810277.1|	-	0.021	14.1	1.6	0.024	14.0	1.6	1.0	1	0	0	1	1	1	0	CorA-like	Mg2+	transporter	protein
XhlA	PF10779.9	gi|345007425|ref|YP_004810277.1|	-	0.063	13.5	0.1	0.53	10.5	0.2	2.0	2	0	0	2	2	2	0	Haemolysin	XhlA
APH	PF01636.23	gi|345007425|ref|YP_004810277.1|	-	0.066	13.1	3.2	0.075	12.9	3.2	1.1	1	0	0	1	1	1	0	Phosphotransferase	enzyme	family
PSK_trans_fac	PF07704.11	gi|345007425|ref|YP_004810277.1|	-	0.23	12.3	2.8	0.48	11.2	2.8	1.7	1	1	0	1	1	1	0	Rv0623-like	transcription	factor
DDE_Tnp_1	PF01609.21	gi|345007426|ref|YP_004810278.1|	-	2.1e-29	102.7	0.2	2.6e-29	102.4	0.2	1.1	1	0	0	1	1	1	1	Transposase	DDE	domain
Corona_3	PF04694.12	gi|345007426|ref|YP_004810278.1|	-	0.0036	17.6	0.1	0.0096	16.2	0.1	1.7	1	0	0	1	1	1	1	Coronavirus	ORF3	protein
MarR_2	PF12802.7	gi|345007427|ref|YP_004810279.1|	-	0.00015	21.5	0.0	0.00029	20.6	0.0	1.4	1	0	0	1	1	1	1	MarR	family
HTH_20	PF12840.7	gi|345007427|ref|YP_004810279.1|	-	0.00055	20.0	0.0	0.00093	19.2	0.0	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
TrmB	PF01978.19	gi|345007427|ref|YP_004810279.1|	-	0.0063	16.4	0.0	0.012	15.5	0.0	1.4	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_5	PF01022.20	gi|345007427|ref|YP_004810279.1|	-	0.062	13.2	0.0	0.1	12.4	0.0	1.3	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
HTH_43	PF09904.9	gi|345007427|ref|YP_004810279.1|	-	0.064	13.2	0.0	0.15	12.1	0.0	1.6	1	0	0	1	1	1	0	Winged	helix-turn	helix
MarR	PF01047.22	gi|345007427|ref|YP_004810279.1|	-	0.18	11.8	0.0	0.38	10.7	0.0	1.5	1	0	0	1	1	1	0	MarR	family
Insulin_TMD	PF17870.1	gi|345007429|ref|YP_004810281.1|	-	0.0041	17.2	0.5	0.43	10.7	0.1	2.3	2	0	0	2	2	2	2	Insulin	receptor	trans-membrane	segment
NADHdh-2_N	PF12155.8	gi|345007429|ref|YP_004810281.1|	-	0.08	13.3	2.8	0.09	13.2	2.6	1.4	1	1	0	1	1	1	0	NADH	dehydrogenase	subunit	2	N-terminal
HRG	PF16954.5	gi|345007429|ref|YP_004810281.1|	-	0.18	12.2	0.2	0.18	12.2	0.2	2.6	4	0	0	4	4	4	0	Haem-transporter,	endosomal/lysosomal,	haem-responsive	gene
DDE_Tnp_1	PF01609.21	gi|345007430|ref|YP_004810282.1|	-	5.2e-13	49.1	4.1	4.1e-12	46.2	4.1	2.0	1	1	0	1	1	1	1	Transposase	DDE	domain
DUF772	PF05598.11	gi|345007430|ref|YP_004810282.1|	-	2.1e-05	24.4	0.0	6e-05	23.0	0.0	1.8	1	0	0	1	1	1	1	Transposase	domain	(DUF772)
DDE_Tnp_1	PF01609.21	gi|345007433|ref|YP_004810285.1|	-	0.0003	20.5	0.5	0.0026	17.4	0.5	2.3	1	1	0	1	1	1	1	Transposase	DDE	domain
DUF772	PF05598.11	gi|345007433|ref|YP_004810285.1|	-	0.14	12.2	2.0	0.23	11.5	0.0	2.3	3	0	0	3	3	3	0	Transposase	domain	(DUF772)
Phage_int_SAM_5	PF13102.6	gi|345007434|ref|YP_004810286.1|	-	3.9e-09	36.8	0.0	6.9e-09	35.9	0.0	1.4	1	0	0	1	1	1	1	Phage	integrase	SAM-like	domain
Phage_integrase	PF00589.22	gi|345007434|ref|YP_004810286.1|	-	6.1e-07	29.4	0.0	0.00076	19.3	0.0	3.6	2	1	0	2	2	2	1	Phage	integrase	family
Phage_int_SAM_4	PF13495.6	gi|345007434|ref|YP_004810286.1|	-	0.0022	18.4	0.0	0.034	14.6	0.0	2.3	2	0	0	2	2	2	1	Phage	integrase,	N-terminal	SAM-like	domain
Phage_int_SAM_1	PF02899.17	gi|345007434|ref|YP_004810286.1|	-	0.0077	16.5	0.0	0.052	13.9	0.0	2.3	2	0	0	2	2	2	1	Phage	integrase,	N-terminal	SAM-like	domain
DUF5618	PF18498.1	gi|345007434|ref|YP_004810286.1|	-	0.023	14.9	0.1	11	6.2	0.0	2.7	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF5618)
Inhibitor_I10	PF12559.8	gi|345007434|ref|YP_004810286.1|	-	0.085	13.1	0.7	45	4.4	0.0	3.6	3	0	0	3	3	3	0	Serine	endopeptidase	inhibitors
Trypan_PARP	PF05887.11	gi|345007435|ref|YP_004810287.1|	-	0.0014	18.6	10.1	0.0021	18.0	10.1	1.2	1	0	0	1	1	1	1	Procyclic	acidic	repetitive	protein	(PARP)
NESP55	PF06390.12	gi|345007435|ref|YP_004810287.1|	-	0.0039	16.8	6.2	0.0047	16.6	6.2	1.1	1	0	0	1	1	1	1	Neuroendocrine-specific	golgi	protein	P55	(NESP55)
Flavodoxin_5	PF12724.7	gi|345007435|ref|YP_004810287.1|	-	0.13	12.5	0.0	0.43	10.8	0.0	1.8	2	0	0	2	2	2	0	Flavodoxin	domain
CAF1A	PF12253.8	gi|345007435|ref|YP_004810287.1|	-	6.9	6.9	13.9	5	7.4	11.6	1.9	1	1	1	2	2	2	0	Chromatin	assembly	factor	1	subunit	A
AAA_31	PF13614.6	gi|345007436|ref|YP_004810288.1|	-	4.1e-20	72.4	0.0	7e-20	71.7	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
CbiA	PF01656.23	gi|345007436|ref|YP_004810288.1|	-	2.1e-13	50.4	0.0	3.3e-13	49.8	0.0	1.3	1	0	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
ArsA_ATPase	PF02374.15	gi|345007436|ref|YP_004810288.1|	-	0.00017	20.9	0.0	0.0016	17.7	0.0	2.1	2	0	0	2	2	2	1	Anion-transporting	ATPase
ParA	PF10609.9	gi|345007436|ref|YP_004810288.1|	-	0.00018	21.0	0.0	0.00032	20.2	0.0	1.3	1	0	0	1	1	1	1	NUBPL	iron-transfer	P-loop	NTPase
MipZ	PF09140.11	gi|345007436|ref|YP_004810288.1|	-	0.0013	18.1	0.0	0.094	12.0	0.0	2.1	2	0	0	2	2	2	1	ATPase	MipZ
Ferritin	PF00210.24	gi|345007436|ref|YP_004810288.1|	-	0.018	15.0	0.1	0.043	13.8	0.1	1.5	1	0	0	1	1	1	0	Ferritin-like	domain
CBP_BcsQ	PF06564.12	gi|345007436|ref|YP_004810288.1|	-	0.06	12.8	0.1	0.14	11.7	0.1	1.6	1	1	0	1	1	1	0	Cellulose	biosynthesis	protein	BcsQ
SRP54	PF00448.22	gi|345007436|ref|YP_004810288.1|	-	0.1	12.2	0.1	1.6	8.3	0.0	2.5	3	0	0	3	3	3	0	SRP54-type	protein,	GTPase	domain
Metallophos_2	PF12850.7	gi|345007438|ref|YP_004810290.1|	-	3.9e-10	40.2	0.0	6.3e-10	39.5	0.0	1.3	1	0	0	1	1	1	1	Calcineurin-like	phosphoesterase	superfamily	domain
Metallophos	PF00149.28	gi|345007438|ref|YP_004810290.1|	-	5.3e-07	30.3	1.0	1.1e-06	29.3	1.0	1.6	1	1	0	1	1	1	1	Calcineurin-like	phosphoesterase
Metallophos_3	PF14582.6	gi|345007438|ref|YP_004810290.1|	-	0.0017	17.7	0.0	0.0025	17.2	0.0	1.2	1	0	0	1	1	1	1	Metallophosphoesterase,	calcineurin	superfamily
Rad51	PF08423.11	gi|345007439|ref|YP_004810291.1|	-	6.8e-49	166.4	1.1	2.8e-47	161.1	1.1	2.6	1	1	0	1	1	1	1	Rad51
HHH_5	PF14520.6	gi|345007439|ref|YP_004810291.1|	-	2.8e-07	31.1	0.0	7.1e-07	29.7	0.0	1.7	1	0	0	1	1	1	1	Helix-hairpin-helix	domain
RecA	PF00154.21	gi|345007439|ref|YP_004810291.1|	-	5.4e-06	26.1	0.1	2.5e-05	23.9	0.0	1.9	2	0	0	2	2	2	1	recA	bacterial	DNA	recombination	protein
AAA_25	PF13481.6	gi|345007439|ref|YP_004810291.1|	-	0.00018	21.1	0.1	0.00045	19.8	0.1	1.6	1	1	0	1	1	1	1	AAA	domain
ATPase	PF06745.13	gi|345007439|ref|YP_004810291.1|	-	0.00021	20.7	0.8	0.0016	17.8	0.8	2.1	1	1	0	1	1	1	1	KaiC
Cdd1	PF11731.8	gi|345007439|ref|YP_004810291.1|	-	0.0016	18.6	0.0	0.0031	17.7	0.0	1.5	1	0	0	1	1	1	1	Pathogenicity	locus
ATPase_2	PF01637.18	gi|345007439|ref|YP_004810291.1|	-	0.042	13.8	0.0	0.063	13.2	0.0	1.3	1	0	0	1	1	1	0	ATPase	domain	predominantly	from	Archaea
HHH_2	PF12826.7	gi|345007439|ref|YP_004810291.1|	-	0.059	13.5	0.0	0.21	11.7	0.0	2.0	1	1	0	1	1	1	0	Helix-hairpin-helix	motif
Zn_ribbon_recom	PF13408.6	gi|345007440|ref|YP_004810292.1|	-	0.0002	21.8	2.1	0.018	15.5	0.3	2.9	2	0	0	2	2	2	1	Recombinase	zinc	beta	ribbon	domain
CoiA	PF06054.11	gi|345007440|ref|YP_004810292.1|	-	0.00022	20.5	0.0	0.00036	19.8	0.0	1.2	1	0	0	1	1	1	1	Competence	protein	CoiA-like	family
Zn-ribbon_8	PF09723.10	gi|345007440|ref|YP_004810292.1|	-	0.016	15.3	3.1	4.3	7.5	0.1	3.1	3	0	0	3	3	3	0	Zinc	ribbon	domain
DNA_ligase_ZBD	PF03119.16	gi|345007440|ref|YP_004810292.1|	-	0.024	14.7	3.8	0.4	10.7	0.4	3.3	2	0	0	2	2	2	0	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
TF_Zn_Ribbon	PF08271.12	gi|345007440|ref|YP_004810292.1|	-	0.041	13.4	5.9	0.4	10.2	0.9	2.7	2	0	0	2	2	2	0	TFIIB	zinc-binding
Prok-RING_1	PF14446.6	gi|345007440|ref|YP_004810292.1|	-	0.053	13.4	1.6	4.9	7.2	0.1	2.7	2	0	0	2	2	2	0	Prokaryotic	RING	finger	family	1
Nudix_N_2	PF14803.6	gi|345007440|ref|YP_004810292.1|	-	0.057	13.3	0.6	7	6.7	0.1	2.9	2	0	0	2	2	2	0	Nudix	N-terminal
DZR	PF12773.7	gi|345007440|ref|YP_004810292.1|	-	0.059	13.4	4.3	1.4	9.0	0.2	3.1	3	0	0	3	3	3	0	Double	zinc	ribbon
Ogr_Delta	PF04606.12	gi|345007440|ref|YP_004810292.1|	-	0.082	12.9	6.4	3.3	7.8	0.4	3.2	2	1	1	3	3	3	0	Ogr/Delta-like	zinc	finger
RNA_POL_M_15KD	PF02150.16	gi|345007440|ref|YP_004810292.1|	-	0.086	12.7	0.2	15	5.5	0.2	2.8	2	0	0	2	2	2	0	RNA	polymerases	M/15	Kd	subunit
zf-C2H2_4	PF13894.6	gi|345007440|ref|YP_004810292.1|	-	0.15	13.0	4.5	6.4	7.9	0.1	3.7	3	0	0	3	3	3	0	C2H2-type	zinc	finger
zf-IS66	PF13005.7	gi|345007440|ref|YP_004810292.1|	-	0.16	12.4	2.4	7.6	7.0	0.0	3.1	3	0	0	3	3	3	0	zinc-finger	binding	domain	of	transposase	IS66
zf-ribbon_3	PF13248.6	gi|345007440|ref|YP_004810292.1|	-	0.23	10.9	6.2	2.8	7.5	0.8	3.2	2	1	0	2	2	2	0	zinc-ribbon	domain
zf-C4_Topoisom	PF01396.19	gi|345007440|ref|YP_004810292.1|	-	0.26	11.1	6.6	3.2	7.6	0.0	3.1	4	0	0	4	4	3	0	Topoisomerase	DNA	binding	C4	zinc	finger
zf-NADH-PPase	PF09297.11	gi|345007440|ref|YP_004810292.1|	-	0.34	10.6	4.0	3.2	7.5	0.1	3.0	2	0	0	2	2	2	0	NADH	pyrophosphatase	zinc	ribbon	domain
zf-TFIIB	PF13453.6	gi|345007440|ref|YP_004810292.1|	-	0.44	9.9	5.9	1.3	8.5	0.2	3.1	3	0	0	3	3	3	0	Transcription	factor	zinc-finger
DUF4572	PF15139.6	gi|345007442|ref|YP_004810294.1|	-	0.0023	17.9	0.1	0.0036	17.3	0.1	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4572)
DUF202	PF02656.15	gi|345007442|ref|YP_004810294.1|	-	0.0026	18.1	1.1	0.32	11.5	0.4	2.2	2	0	0	2	2	2	2	Domain	of	unknown	function	(DUF202)
DUF2892	PF11127.8	gi|345007442|ref|YP_004810294.1|	-	0.12	12.4	0.7	2.5	8.2	0.2	2.2	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2892)
DUF3185	PF11381.8	gi|345007442|ref|YP_004810294.1|	-	6	7.0	8.3	9.2	6.4	5.3	2.3	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3185)
HEPN_Apea	PF18739.1	gi|345007443|ref|YP_004810295.1|	-	0.011	16.1	0.0	0.017	15.6	0.0	1.4	1	1	0	1	1	1	0	Apea-like	HEPN
DDE_Tnp_1	PF01609.21	gi|345007444|ref|YP_004810296.1|	-	0.031	13.9	0.1	0.085	12.5	0.1	1.7	1	1	0	1	1	1	0	Transposase	DDE	domain
FlaC_arch	PF05377.11	gi|345007446|ref|YP_004810298.1|	-	0.13	12.7	0.1	1.5	9.3	0.1	2.2	1	1	1	2	2	2	0	Flagella	accessory	protein	C	(FlaC)
TF_Zn_Ribbon	PF08271.12	gi|345007447|ref|YP_004810299.1|	-	0.13	11.8	0.5	0.31	10.6	0.1	1.8	2	0	0	2	2	2	0	TFIIB	zinc-binding
HEPN_Apea	PF18739.1	gi|345007448|ref|YP_004810300.1|	-	0.0012	19.2	0.4	0.0026	18.2	0.4	1.5	1	0	0	1	1	1	1	Apea-like	HEPN
Phage_integrase	PF00589.22	gi|345007449|ref|YP_004810301.1|	-	3.9e-16	59.3	2.3	1.9e-12	47.3	1.6	2.2	2	0	0	2	2	2	2	Phage	integrase	family
MBT	PF02820.18	gi|345007449|ref|YP_004810301.1|	-	0.13	12.6	0.0	0.39	11.1	0.0	1.9	1	0	0	1	1	1	0	mbt	repeat
PLU-1	PF08429.11	gi|345007450|ref|YP_004810302.1|	-	0.012	14.8	0.1	0.026	13.7	0.1	1.5	1	1	0	1	1	1	0	PLU-1-like	protein
Orthopox_F14	PF06076.12	gi|345007450|ref|YP_004810302.1|	-	0.1	12.9	3.3	0.15	12.4	0.7	2.3	2	1	0	2	2	2	0	Orthopoxvirus	F14	protein
DUF713	PF05218.14	gi|345007450|ref|YP_004810302.1|	-	0.11	12.3	2.2	1.1	8.9	2.2	2.0	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF713)
7TMR-HDED	PF07697.11	gi|345007450|ref|YP_004810302.1|	-	0.11	12.5	1.9	0.14	12.3	0.3	1.7	1	1	1	2	2	2	0	7TM-HD	extracellular
DNA_ligase_ZBD	PF03119.16	gi|345007451|ref|YP_004810303.1|	-	0.0019	18.2	0.7	1.6	8.9	0.1	2.8	2	1	0	2	2	2	2	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
Prok-RING_4	PF14447.6	gi|345007451|ref|YP_004810303.1|	-	0.013	15.4	0.9	4.7	7.1	0.1	2.4	2	0	0	2	2	2	0	Prokaryotic	RING	finger	family	4
zf-C2H2_9	PF16293.5	gi|345007451|ref|YP_004810303.1|	-	0.027	14.3	0.6	2.6	7.9	0.1	2.4	2	0	0	2	2	2	0	C2H2	type	zinc-finger	(1	copy)
zf-RRN7	PF11781.8	gi|345007451|ref|YP_004810303.1|	-	0.031	14.0	1.5	3.9	7.2	0.1	2.4	2	0	0	2	2	2	0	Zinc-finger	of	RNA-polymerase	I-specific	TFIIB,	Rrn7
Prok-RING_1	PF14446.6	gi|345007451|ref|YP_004810303.1|	-	0.042	13.8	0.7	0.78	9.7	0.1	2.3	2	0	0	2	2	2	0	Prokaryotic	RING	finger	family	1
zf-C3HC4_3	PF13920.6	gi|345007451|ref|YP_004810303.1|	-	0.042	13.7	3.1	0.85	9.5	0.3	2.3	2	0	0	2	2	2	0	Zinc	finger,	C3HC4	type	(RING	finger)
Zn_Tnp_IS1595	PF12760.7	gi|345007451|ref|YP_004810303.1|	-	0.043	13.8	3.5	0.96	9.5	0.2	2.3	1	1	1	2	2	2	0	Transposase	zinc-ribbon	domain
zf-Di19	PF05605.12	gi|345007451|ref|YP_004810303.1|	-	0.12	12.7	2.3	16	5.9	2.3	2.3	1	1	1	2	2	2	0	Drought	induced	19	protein	(Di19),	zinc-binding
Cys_rich_KTR	PF14205.6	gi|345007451|ref|YP_004810303.1|	-	0.29	11.0	2.0	13	5.6	0.2	2.5	2	0	0	2	2	2	0	Cysteine-rich	KTR
Rad50_zn_hook	PF04423.14	gi|345007451|ref|YP_004810303.1|	-	0.73	9.7	5.9	11	5.9	0.0	2.9	3	0	0	3	3	3	0	Rad50	zinc	hook	motif
HTH_24	PF13412.6	gi|345007452|ref|YP_004810304.1|	-	1.6e-11	43.6	0.1	0.00022	20.7	0.0	3.2	4	0	0	4	4	4	2	Winged	helix-turn-helix	DNA-binding
HTH_AsnC-type	PF13404.6	gi|345007452|ref|YP_004810304.1|	-	1.9e-07	30.8	0.1	0.0023	17.7	0.0	2.9	3	0	0	3	3	2	2	AsnC-type	helix-turn-helix	domain
Rit1_C	PF17184.4	gi|345007452|ref|YP_004810304.1|	-	0.0017	17.9	0.8	0.0035	16.9	0.0	1.8	2	1	0	2	2	2	1	Rit1	N-terminal	domain
TipAS	PF07739.13	gi|345007452|ref|YP_004810304.1|	-	0.01	16.4	8.1	1.5	9.4	0.1	3.6	3	1	1	4	4	4	0	TipAS	antibiotic-recognition	domain
MarR	PF01047.22	gi|345007452|ref|YP_004810304.1|	-	0.011	15.6	0.0	4.6	7.2	0.0	3.3	3	0	0	3	3	3	0	MarR	family
Phasin_2	PF09361.10	gi|345007452|ref|YP_004810304.1|	-	0.012	15.9	1.9	4.7	7.5	0.0	3.2	2	1	1	3	3	3	0	Phasin	protein
HTH_5	PF01022.20	gi|345007452|ref|YP_004810304.1|	-	0.014	15.3	0.2	3.2	7.7	0.0	3.0	3	0	0	3	3	3	0	Bacterial	regulatory	protein,	arsR	family
HTH_Tnp_Tc3_2	PF01498.18	gi|345007452|ref|YP_004810304.1|	-	0.019	15.2	0.7	17	5.7	0.0	4.2	5	0	0	5	5	5	0	Transposase
LexA_DNA_bind	PF01726.16	gi|345007452|ref|YP_004810304.1|	-	0.031	14.0	0.0	0.73	9.7	0.0	3.0	2	0	0	2	2	2	0	LexA	DNA	binding	domain
DHC	PF09626.10	gi|345007452|ref|YP_004810304.1|	-	0.076	13.9	5.2	17	6.3	0.0	4.0	2	1	2	4	4	4	0	Dihaem	cytochrome	c
HTH_23	PF13384.6	gi|345007452|ref|YP_004810304.1|	-	0.14	12.0	0.0	27	4.7	0.0	3.0	3	0	0	3	3	3	0	Homeodomain-like	domain
Carbpep_Y_N	PF05388.11	gi|345007452|ref|YP_004810304.1|	-	0.6	10.6	0.0	0.6	10.6	0.0	2.9	2	1	0	3	3	3	0	Carboxypeptidase	Y	pro-peptide
POTRA	PF07244.15	gi|345007452|ref|YP_004810304.1|	-	1.2	9.8	4.4	51	4.5	0.0	4.1	4	1	0	4	4	4	0	Surface	antigen	variable	number	repeat
Tn7_Tnp_TnsA_C	PF08721.11	gi|345007452|ref|YP_004810304.1|	-	3.2	8.5	8.6	29	5.4	0.1	4.5	4	1	1	5	5	5	0	TnsA	endonuclease	C	terminal
DUF4162	PF13732.6	gi|345007452|ref|YP_004810304.1|	-	5.5	7.8	9.5	0.31	11.8	1.9	2.9	3	1	2	5	5	4	0	Domain	of	unknown	function	(DUF4162)
DUF790	PF05626.11	gi|345007453|ref|YP_004810305.1|	-	4.3e-142	473.4	0.0	4.9e-142	473.2	0.0	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF790)
DUF569	PF04601.13	gi|345007453|ref|YP_004810305.1|	-	0.07	12.8	0.2	0.29	10.8	0.0	2.1	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF569)
ERCC3_RAD25_C	PF16203.5	gi|345007454|ref|YP_004810306.1|	-	3.9e-24	85.2	0.2	6.1e-24	84.6	0.2	1.2	1	0	0	1	1	1	1	ERCC3/RAD25/XPB	C-terminal	helicase
Helicase_C	PF00271.31	gi|345007454|ref|YP_004810306.1|	-	3.2e-17	62.9	0.1	7.1e-17	61.8	0.1	1.6	1	0	0	1	1	1	1	Helicase	conserved	C-terminal	domain
ResIII	PF04851.15	gi|345007454|ref|YP_004810306.1|	-	8.5e-10	38.9	0.0	6.8e-09	35.9	0.0	2.1	2	0	0	2	2	2	1	Type	III	restriction	enzyme,	res	subunit
Helicase_C_2	PF13307.6	gi|345007454|ref|YP_004810306.1|	-	0.07	13.3	0.4	2.4	8.3	0.0	2.7	1	1	1	2	2	2	0	Helicase	C-terminal	domain
DEAD	PF00270.29	gi|345007454|ref|YP_004810306.1|	-	0.1	12.4	0.0	0.22	11.3	0.0	1.6	1	0	0	1	1	1	0	DEAD/DEAH	box	helicase
#
# Program:         hmmscan
# Version:         3.2.1 (June 2018)
# Pipeline mode:   SCAN
# Query file:      /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/halophilic_archaeon_DL31_uid72619/NC_015955.faa
# Target file:     /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm
# Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/halophilic_archaeon_DL31_uid72619/NC_015955.PFam32-A --tblout /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/halophilic_archaeon_DL31_uid72619/NC_015955.PFam32-A.tblout --cpu 20 /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/halophilic_archaeon_DL31_uid72619/NC_015955.faa 
# Current dir:     /oak/stanford/groups/akundaje/marinovg/genomes
# Date:            Mon Mar 25 12:36:52 2019
# [ok]