# --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- PI-TkoII_IV PF18714.1 gi|212223145|ref|YP_002306381.1| - 5.3e-79 262.9 4.9 1.4e-78 261.5 4.9 1.8 1 0 0 1 1 1 1 DNA polymerase II intein Domain IV DNA_pol_B PF00136.21 gi|212223145|ref|YP_002306381.1| - 1.4e-74 251.5 0.1 3.2e-43 148.1 0.2 2.2 2 0 0 2 2 2 2 DNA polymerase family B DNA_pol_B_exo1 PF03104.19 gi|212223145|ref|YP_002306381.1| - 5.5e-48 163.8 0.7 3.1e-33 115.3 0.0 2.6 1 1 1 2 2 2 2 DNA polymerase family B, exonuclease domain Intein_splicing PF14890.6 gi|212223145|ref|YP_002306381.1| - 8.2e-34 116.4 0.5 3.6e-33 114.4 0.2 2.2 2 0 0 2 2 2 1 Intein splicing domain LAGLIDADG_3 PF14528.6 gi|212223145|ref|YP_002306381.1| - 1.7e-13 50.7 1.3 2.4e-06 27.8 0.1 3.7 3 1 0 3 3 2 2 LAGLIDADG-like domain DNA_pol_B_exo2 PF10108.9 gi|212223145|ref|YP_002306381.1| - 1.5e-08 34.6 0.0 3.2e-08 33.5 0.0 1.4 1 0 0 1 1 1 1 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB RNase_H_2 PF13482.6 gi|212223145|ref|YP_002306381.1| - 3e-08 33.8 0.1 9.1e-08 32.3 0.1 1.9 1 0 0 1 1 1 1 RNase_H superfamily DNA_pol_B_2 PF03175.13 gi|212223145|ref|YP_002306381.1| - 0.00042 19.3 0.0 0.00081 18.4 0.0 1.4 1 0 0 1 1 1 1 DNA polymerase type B, organellar and viral Hom_end PF05204.14 gi|212223145|ref|YP_002306381.1| - 0.017 15.3 0.0 0.079 13.1 0.0 2.1 2 0 0 2 2 2 0 Homing endonuclease NTF-like PF14540.6 gi|212223145|ref|YP_002306381.1| - 0.046 13.5 0.1 0.12 12.2 0.1 1.6 1 0 0 1 1 1 0 Nucleotidyltransferase-like PurS PF02700.14 gi|212223145|ref|YP_002306381.1| - 0.055 13.7 0.8 0.24 11.6 0.8 2.1 1 0 0 1 1 1 0 Phosphoribosylformylglycinamidine (FGAM) synthase OpcA PF07239.11 gi|212223145|ref|YP_002306381.1| - 0.15 11.7 1.1 0.65 9.6 0.1 2.2 2 0 0 2 2 2 0 Outer membrane protein OpcA HAD_2 PF13419.6 gi|212223146|ref|YP_002306382.1| - 5.2e-16 59.2 0.0 1.1e-15 58.2 0.0 1.6 2 0 0 2 2 2 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|212223146|ref|YP_002306382.1| - 1.8e-11 44.7 0.1 4.5e-11 43.4 0.1 1.7 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|212223146|ref|YP_002306382.1| - 3e-06 27.2 0.0 5.9e-06 26.3 0.0 1.4 1 0 0 1 1 1 1 HAD-hyrolase-like HEAT_2 PF13646.6 gi|212223146|ref|YP_002306382.1| - 0.0098 16.3 0.5 0.016 15.6 0.5 1.3 1 0 0 1 1 1 1 HEAT repeats HAD PF12710.7 gi|212223146|ref|YP_002306382.1| - 0.014 15.8 0.0 0.022 15.2 0.0 1.5 1 1 0 1 1 1 0 haloacid dehalogenase-like hydrolase DUF3226 PF11536.8 gi|212223147|ref|YP_002306383.1| - 7.4e-77 258.2 0.3 1.2e-76 257.5 0.3 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF3226) DUF4435 PF14491.6 gi|212223147|ref|YP_002306383.1| - 0.042 13.7 0.1 0.092 12.6 0.1 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF4435) DUF2391 PF09622.10 gi|212223148|ref|YP_002306384.1| - 3.4e-11 43.0 0.5 4.1e-11 42.7 0.5 1.1 1 0 0 1 1 1 1 Putative integral membrane protein (DUF2391) S_layer_C PF05124.12 gi|212223149|ref|YP_002306385.1| - 2e-09 37.8 3.6 3.6e-09 36.9 0.5 2.6 3 0 0 3 3 3 1 S-layer like family, C-terminal region BcsB PF03170.13 gi|212223149|ref|YP_002306385.1| - 0.0029 16.0 0.0 0.0065 14.9 0.0 1.5 1 0 0 1 1 1 1 Bacterial cellulose synthase subunit MFS_1 PF07690.16 gi|212223150|ref|YP_002306386.1| - 1.9e-46 158.7 74.1 9.5e-34 116.9 42.5 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.7 gi|212223150|ref|YP_002306386.1| - 1e-06 27.9 31.0 4e-06 25.9 1.2 4.5 2 2 3 5 5 5 4 MFS_1 like family MFS_2 PF13347.6 gi|212223150|ref|YP_002306386.1| - 1.4e-06 27.2 12.2 1.4e-06 27.2 12.2 3.0 1 1 1 3 3 3 1 MFS/sugar transport protein Sugar_tr PF00083.24 gi|212223150|ref|YP_002306386.1| - 1.3e-05 24.3 14.7 0.00017 20.6 6.3 3.2 1 1 2 3 3 3 2 Sugar (and other) transporter tRNA_anti-codon PF01336.25 gi|212223151|ref|YP_002306387.1| - 1.9e-10 40.6 0.2 4.4e-10 39.4 0.2 1.7 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain S1 PF00575.23 gi|212223151|ref|YP_002306387.1| - 9.2e-10 38.7 1.5 2.2e-09 37.5 1.5 1.7 1 0 0 1 1 1 1 S1 RNA binding domain DnaJ_CXXCXGXG PF00684.19 gi|212223151|ref|YP_002306387.1| - 3.7e-06 27.2 18.8 0.023 15.1 5.4 2.5 1 1 0 2 2 2 2 DnaJ central domain DHH PF01368.20 gi|212223151|ref|YP_002306387.1| - 7.3e-05 23.0 0.1 0.00027 21.1 0.0 1.9 2 0 0 2 2 2 1 DHH family TackOD1 PF18551.1 gi|212223151|ref|YP_002306387.1| - 0.0011 18.7 0.4 0.0011 18.7 0.4 1.9 1 1 1 2 2 2 1 Thaumarchaeal output domain 1 Anti-TRAP PF15777.5 gi|212223151|ref|YP_002306387.1| - 0.037 14.0 21.9 0.092 12.7 0.4 4.0 2 1 2 4 4 4 0 Tryptophan RNA-binding attenuator protein inhibitory protein DHHA1 PF02272.19 gi|212223151|ref|YP_002306387.1| - 0.12 12.8 0.0 0.85 10.0 0.0 2.3 2 0 0 2 2 2 0 DHHA1 domain zf-RING_10 PF16685.5 gi|212223151|ref|YP_002306387.1| - 1.5 9.0 4.2 6.9 6.9 0.5 2.5 2 0 0 2 2 2 0 zinc RING finger of MSL2 Cytochrom_c3_2 PF14537.6 gi|212223151|ref|YP_002306387.1| - 1.8 9.1 5.9 0.66 10.5 1.8 2.1 1 1 1 2 2 2 0 Cytochrome c3 Stc1 PF12898.7 gi|212223151|ref|YP_002306387.1| - 2.4 8.8 4.5 1.7 9.3 1.4 2.3 1 1 1 2 2 2 0 Stc1 domain zinc-ribbons_6 PF07191.12 gi|212223151|ref|YP_002306387.1| - 8.3 6.5 11.5 22 5.1 0.5 2.9 2 1 0 2 2 2 0 zinc-ribbons DUF5535 PF17687.1 gi|212223152|ref|YP_002306388.1| - 0.059 13.5 0.0 0.076 13.2 0.0 1.1 1 0 0 1 1 1 0 Family of unknown function (DUF5535) DUF4288 PF14119.6 gi|212223153|ref|YP_002306389.1| - 0.067 13.6 0.1 0.092 13.2 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4288) Arm-DNA-bind_3 PF13356.6 gi|212223153|ref|YP_002306389.1| - 0.13 12.6 0.2 0.19 12.1 0.2 1.2 1 0 0 1 1 1 0 Arm DNA-binding domain MFS_1 PF07690.16 gi|212223154|ref|YP_002306390.1| - 4.4e-44 150.8 29.1 2.6e-28 99.0 8.9 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_2 PF13347.6 gi|212223154|ref|YP_002306390.1| - 4.5e-07 28.8 18.5 4.5e-07 28.8 18.5 2.9 2 1 0 2 2 2 1 MFS/sugar transport protein MFS_1_like PF12832.7 gi|212223154|ref|YP_002306390.1| - 9.4e-07 28.0 18.5 1.3e-05 24.3 18.5 2.0 1 1 0 1 1 1 1 MFS_1 like family PUCC PF03209.15 gi|212223154|ref|YP_002306390.1| - 7e-05 22.0 10.9 0.002 17.2 2.0 3.1 2 2 0 2 2 2 2 PUCC protein PadR PF03551.14 gi|212223155|ref|YP_002306391.1| - 6.2e-19 67.7 0.1 7.7e-19 67.4 0.1 1.1 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family RTP PF02334.16 gi|212223155|ref|YP_002306391.1| - 1.7e-08 35.1 0.0 2e-08 34.9 0.0 1.1 1 0 0 1 1 1 1 Replication terminator protein HTH_34 PF13601.6 gi|212223155|ref|YP_002306391.1| - 0.00032 20.8 0.0 0.00044 20.4 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain FUR PF01475.19 gi|212223155|ref|YP_002306391.1| - 0.0077 16.4 0.0 0.0081 16.3 0.0 1.2 1 0 0 1 1 1 1 Ferric uptake regulator family HTH_12 PF08461.10 gi|212223155|ref|YP_002306391.1| - 0.0082 16.1 0.0 0.014 15.3 0.0 1.5 1 1 0 1 1 1 1 Ribonuclease R winged-helix domain DUF4364 PF14277.6 gi|212223155|ref|YP_002306391.1| - 0.019 14.7 0.0 0.019 14.7 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) HTH_27 PF13463.6 gi|212223155|ref|YP_002306391.1| - 0.021 15.3 0.8 0.11 13.0 0.1 2.4 2 1 0 2 2 2 0 Winged helix DNA-binding domain DUF505 PF04458.12 gi|212223155|ref|YP_002306391.1| - 0.026 12.9 0.0 0.026 12.9 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF505) MarR PF01047.22 gi|212223155|ref|YP_002306391.1| - 0.1 12.5 0.0 0.17 11.8 0.0 1.4 1 1 0 1 1 1 0 MarR family 4HBT PF03061.22 gi|212223156|ref|YP_002306392.1| - 6.3e-08 32.9 0.0 1.2e-07 32.0 0.0 1.5 1 1 0 1 1 1 1 Thioesterase superfamily MaoC_dehydratas PF01575.19 gi|212223156|ref|YP_002306392.1| - 5.5e-05 22.7 0.0 8e-05 22.2 0.0 1.2 1 0 0 1 1 1 1 MaoC like domain 4HBT_3 PF13622.6 gi|212223156|ref|YP_002306392.1| - 0.0079 16.5 0.0 0.0092 16.3 0.0 1.1 1 0 0 1 1 1 1 Thioesterase-like superfamily DUF2240 PF09999.9 gi|212223157|ref|YP_002306393.1| - 4.2e-10 39.4 0.0 6.1e-08 32.4 0.0 2.0 1 1 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2240) DUF2067 PF09840.9 gi|212223157|ref|YP_002306393.1| - 0.018 14.6 0.8 0.018 14.6 0.8 1.8 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2067) CENP-R PF06729.12 gi|212223157|ref|YP_002306393.1| - 0.068 13.1 0.2 0.12 12.3 0.1 1.5 2 0 0 2 2 2 0 Kinetochore component, CENP-R PBP_like_2 PF12849.7 gi|212223158|ref|YP_002306394.1| - 3e-23 82.9 0.1 3.8e-23 82.6 0.1 1.1 1 0 0 1 1 1 1 PBP superfamily domain SBP_bac_11 PF13531.6 gi|212223158|ref|YP_002306394.1| - 2e-07 31.0 0.0 6e-07 29.4 0.0 1.7 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.6 gi|212223158|ref|YP_002306394.1| - 0.0028 17.5 0.1 0.01 15.7 0.1 1.8 1 1 0 2 2 2 1 Bacterial extracellular solute-binding protein BPD_transp_1 PF00528.22 gi|212223159|ref|YP_002306395.1| - 5.4e-14 52.3 17.5 7.4e-14 51.9 17.5 1.2 1 0 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component Antimicrobial19 PF08225.11 gi|212223159|ref|YP_002306395.1| - 0.072 12.7 0.0 0.18 11.4 0.0 1.7 1 0 0 1 1 1 0 Pseudin antimicrobial peptide ABC_tran PF00005.27 gi|212223160|ref|YP_002306396.1| - 2.4e-34 118.8 0.0 7.1e-34 117.3 0.0 1.7 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.6 gi|212223160|ref|YP_002306396.1| - 2.5e-09 37.4 0.0 5.5e-05 23.1 0.0 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|212223160|ref|YP_002306396.1| - 9.8e-06 25.2 0.0 0.00012 21.7 0.0 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|212223160|ref|YP_002306396.1| - 2.1e-05 24.4 0.0 0.029 14.1 0.0 2.1 1 1 1 2 2 2 2 AAA ATPase domain AAA_22 PF13401.6 gi|212223160|ref|YP_002306396.1| - 0.00028 21.2 0.1 0.0013 19.1 0.1 1.9 1 1 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 gi|212223160|ref|YP_002306396.1| - 0.00085 19.3 0.1 0.0027 17.6 0.0 1.8 2 0 0 2 2 2 1 RsgA GTPase AAA_13 PF13166.6 gi|212223160|ref|YP_002306396.1| - 0.0017 17.1 0.0 0.82 8.2 0.0 2.2 1 1 1 2 2 2 2 AAA domain AAA_16 PF13191.6 gi|212223160|ref|YP_002306396.1| - 0.0033 17.8 0.0 0.006 17.0 0.0 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.6 gi|212223160|ref|YP_002306396.1| - 0.0048 16.6 0.0 0.0092 15.7 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_33 PF13671.6 gi|212223160|ref|YP_002306396.1| - 0.0065 16.6 0.4 0.03 14.5 0.4 1.9 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.6 gi|212223160|ref|YP_002306396.1| - 0.0076 16.8 0.0 0.03 14.8 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA_30 PF13604.6 gi|212223160|ref|YP_002306396.1| - 0.014 15.1 0.0 0.25 11.0 0.0 2.2 2 0 0 2 2 2 0 AAA domain SbcCD_C PF13558.6 gi|212223160|ref|YP_002306396.1| - 0.024 14.9 0.1 0.6 10.4 0.1 2.3 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit Rad17 PF03215.15 gi|212223160|ref|YP_002306396.1| - 0.024 14.5 0.0 0.042 13.8 0.0 1.4 1 0 0 1 1 1 0 Rad17 P-loop domain ABC_ATPase PF09818.9 gi|212223160|ref|YP_002306396.1| - 0.032 13.0 0.2 3.1 6.5 0.1 2.3 2 1 0 2 2 2 0 Predicted ATPase of the ABC class MobB PF03205.14 gi|212223160|ref|YP_002306396.1| - 0.035 14.0 0.0 0.3 11.0 0.0 2.2 2 1 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B ATP-synt_ab PF00006.25 gi|212223160|ref|YP_002306396.1| - 0.049 13.3 0.2 0.27 10.8 0.0 2.0 2 1 0 2 2 2 0 ATP synthase alpha/beta family, nucleotide-binding domain GTP_EFTU PF00009.27 gi|212223160|ref|YP_002306396.1| - 0.062 12.8 0.0 0.14 11.7 0.0 1.6 2 0 0 2 2 2 0 Elongation factor Tu GTP binding domain NACHT PF05729.12 gi|212223160|ref|YP_002306396.1| - 0.081 12.8 0.0 0.16 11.9 0.0 1.5 1 0 0 1 1 1 0 NACHT domain AAA_18 PF13238.6 gi|212223160|ref|YP_002306396.1| - 0.081 13.5 0.0 0.69 10.5 0.0 2.2 2 1 0 2 2 2 0 AAA domain cobW PF02492.19 gi|212223160|ref|YP_002306396.1| - 0.097 12.3 0.0 0.39 10.3 0.0 1.8 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain AAA_28 PF13521.6 gi|212223160|ref|YP_002306396.1| - 0.11 12.8 0.1 0.67 10.2 0.0 2.2 2 1 1 3 3 3 0 AAA domain MMR_HSR1 PF01926.23 gi|212223160|ref|YP_002306396.1| - 0.14 12.2 0.1 0.88 9.7 0.0 2.1 2 1 0 2 2 2 0 50S ribosome-binding GTPase B12-binding PF02310.19 gi|212223160|ref|YP_002306396.1| - 0.15 12.1 0.1 0.49 10.5 0.0 1.7 1 1 1 2 2 2 0 B12 binding domain Isochorismatase PF00857.20 gi|212223161|ref|YP_002306397.1| - 2.6e-47 161.2 0.0 2.9e-47 161.1 0.0 1.0 1 0 0 1 1 1 1 Isochorismatase family Nitro_FeMo-Co PF02579.17 gi|212223161|ref|YP_002306397.1| - 0.12 12.7 0.1 3.3 8.1 0.0 2.2 2 0 0 2 2 2 0 Dinitrogenase iron-molybdenum cofactor AI-2E_transport PF01594.16 gi|212223162|ref|YP_002306398.1| - 2.7e-33 115.5 29.1 4.4e-33 114.8 29.1 1.2 1 0 0 1 1 1 1 AI-2E family transporter TMEM237 PF15383.6 gi|212223162|ref|YP_002306398.1| - 0.03 13.4 0.3 0.056 12.5 0.3 1.4 1 0 0 1 1 1 0 Transmembrane protein 237 DUF4152 PF13680.6 gi|212223164|ref|YP_002306400.1| - 1e-124 414.2 1.0 1.2e-124 414.1 1.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF4152) TPP_enzyme_C PF02775.21 gi|212223165|ref|YP_002306401.1| - 3.3e-32 111.4 0.1 5.5e-32 110.7 0.1 1.4 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain POR_N PF01855.19 gi|212223165|ref|YP_002306401.1| - 1.2e-14 54.6 0.0 2e-14 53.9 0.0 1.3 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Fer4 PF00037.27 gi|212223165|ref|YP_002306401.1| - 3.3e-10 39.3 9.3 6e-07 29.0 1.9 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|212223165|ref|YP_002306401.1| - 1.3e-06 28.5 7.8 2.8e-06 27.4 7.8 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|212223165|ref|YP_002306401.1| - 1.2e-05 25.8 8.4 5.4e-05 23.7 8.7 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|212223165|ref|YP_002306401.1| - 1.6e-05 24.8 8.8 0.0061 16.6 1.4 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|212223165|ref|YP_002306401.1| - 2.9e-05 23.9 17.0 0.0026 17.8 1.6 2.8 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|212223165|ref|YP_002306401.1| - 5.8e-05 23.2 11.3 0.00041 20.4 10.8 2.4 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|212223165|ref|YP_002306401.1| - 0.00023 21.2 10.1 0.0039 17.3 1.1 2.5 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|212223165|ref|YP_002306401.1| - 0.017 16.0 7.1 0.036 15.0 0.7 2.7 2 0 0 2 2 2 0 4Fe-4S double cluster binding domain Fer4_4 PF12800.7 gi|212223165|ref|YP_002306401.1| - 0.042 14.4 9.7 1.5 9.5 1.5 2.7 2 0 0 2 2 2 0 4Fe-4S binding domain DXP_synthase_N PF13292.6 gi|212223165|ref|YP_002306401.1| - 0.043 13.0 0.4 2.8 7.1 0.0 2.2 1 1 1 2 2 2 0 1-deoxy-D-xylulose-5-phosphate synthase Transket_pyr PF02779.24 gi|212223165|ref|YP_002306401.1| - 0.05 13.3 0.1 11 5.7 0.0 3.0 2 1 0 2 2 2 0 Transketolase, pyrimidine binding domain Fer4_15 PF13459.6 gi|212223165|ref|YP_002306401.1| - 0.2 12.4 8.3 0.24 12.1 1.1 2.7 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_22 PF17179.4 gi|212223165|ref|YP_002306401.1| - 0.58 11.0 5.5 0.38 11.6 0.3 2.5 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|212223165|ref|YP_002306401.1| - 1.9 9.6 14.1 0.61 11.2 4.8 2.8 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_13 PF13370.6 gi|212223165|ref|YP_002306401.1| - 2.6 8.6 10.8 3 8.5 1.8 2.7 1 1 1 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Wzy_C PF04932.15 gi|212223166|ref|YP_002306402.1| - 0.024 14.3 0.6 0.024 14.3 0.6 1.0 1 0 0 1 1 1 0 O-Antigen ligase FixQ PF05545.11 gi|212223166|ref|YP_002306402.1| - 0.026 14.5 0.1 0.034 14.1 0.1 1.3 1 0 0 1 1 1 0 Cbb3-type cytochrome oxidase component FixQ Phage_holin_3_6 PF07332.11 gi|212223166|ref|YP_002306402.1| - 0.094 12.8 2.6 0.11 12.6 2.6 1.0 1 0 0 1 1 1 0 Putative Actinobacterial Holin-X, holin superfamily III SafA PF17073.5 gi|212223166|ref|YP_002306402.1| - 0.95 9.5 3.7 0.81 9.7 2.9 1.3 1 1 0 1 1 1 0 Two-component-system connector protein TctB PF07331.11 gi|212223167|ref|YP_002306403.1| - 0.023 15.0 5.0 0.027 14.7 5.0 1.1 1 0 0 1 1 1 0 Tripartite tricarboxylate transporter TctB family DUF2207 PF09972.9 gi|212223167|ref|YP_002306403.1| - 0.18 10.5 4.8 0.2 10.4 4.8 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) Phage_holin_3_6 PF07332.11 gi|212223167|ref|YP_002306403.1| - 2 8.5 7.3 2.4 8.2 7.3 1.1 1 0 0 1 1 1 0 Putative Actinobacterial Holin-X, holin superfamily III CcmD PF04995.14 gi|212223167|ref|YP_002306403.1| - 2.8 8.1 7.6 2 8.5 0.4 2.2 2 0 0 2 2 2 0 Heme exporter protein D (CcmD) Thioredoxin_15 PF18403.1 gi|212223168|ref|YP_002306404.1| - 0.072 13.0 0.3 0.078 12.9 0.3 1.0 1 0 0 1 1 1 0 Thioredoxin-like domain MazG-like PF12643.7 gi|212223169|ref|YP_002306405.1| - 1.1e-22 80.1 1.6 1.5e-22 79.6 1.6 1.2 1 0 0 1 1 1 1 MazG-like family MazG PF03819.17 gi|212223169|ref|YP_002306405.1| - 1.1e-06 28.7 3.0 1.7e-06 28.1 3.0 1.4 1 1 0 1 1 1 1 MazG nucleotide pyrophosphohydrolase domain PRA-PH PF01503.17 gi|212223169|ref|YP_002306405.1| - 0.00021 21.7 0.6 0.00025 21.4 0.6 1.2 1 0 0 1 1 1 1 Phosphoribosyl-ATP pyrophosphohydrolase HIT PF01230.23 gi|212223170|ref|YP_002306406.1| - 1.5e-24 86.6 0.0 1.8e-24 86.3 0.0 1.1 1 0 0 1 1 1 1 HIT domain DcpS_C PF11969.8 gi|212223170|ref|YP_002306406.1| - 8.7e-13 48.8 0.0 1.3e-12 48.2 0.0 1.2 1 0 0 1 1 1 1 Scavenger mRNA decapping enzyme C-term binding DUF4133 PF13571.6 gi|212223171|ref|YP_002306407.1| - 0.036 14.4 1.3 0.044 14.1 1.3 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4133) TRP PF06011.12 gi|212223171|ref|YP_002306407.1| - 0.041 12.6 2.0 0.045 12.5 2.0 1.0 1 0 0 1 1 1 0 Transient receptor potential (TRP) ion channel LptF_LptG PF03739.14 gi|212223171|ref|YP_002306407.1| - 0.044 12.6 4.5 0.047 12.5 4.5 1.0 1 0 0 1 1 1 0 Lipopolysaccharide export system permease LptF/LptG Deltameth_res PF16020.5 gi|212223171|ref|YP_002306407.1| - 0.065 13.1 0.9 0.25 11.2 0.0 2.0 2 0 0 2 2 2 0 Deltamethrin resistance E1-E2_ATPase PF00122.20 gi|212223171|ref|YP_002306407.1| - 0.084 12.4 1.5 0.096 12.2 1.5 1.1 1 0 0 1 1 1 0 E1-E2 ATPase DUF202 PF02656.15 gi|212223171|ref|YP_002306407.1| - 0.21 12.1 4.3 0.22 12.0 4.0 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF202) Phage_holin_3_6 PF07332.11 gi|212223171|ref|YP_002306407.1| - 0.36 10.9 10.1 0.29 11.2 9.3 1.3 1 1 0 1 1 1 0 Putative Actinobacterial Holin-X, holin superfamily III DUF2207 PF09972.9 gi|212223171|ref|YP_002306407.1| - 1.4 7.6 3.3 1.6 7.4 3.3 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) COX4_pro_2 PF07835.12 gi|212223171|ref|YP_002306407.1| - 5.7 7.1 9.2 1.4 9.1 0.8 2.4 1 1 1 2 2 2 0 Bacterial aa3 type cytochrome c oxidase subunit IV DUF2615 PF11027.8 gi|212223171|ref|YP_002306407.1| - 9.5 6.4 6.4 15 5.8 0.4 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF2615) Proteasome PF00227.26 gi|212223172|ref|YP_002306408.1| - 1.4e-64 217.1 0.1 3.7e-64 215.7 0.0 1.6 1 1 1 2 2 2 1 Proteasome subunit Proteasome_A_N PF10584.9 gi|212223172|ref|YP_002306408.1| - 1.3e-12 47.1 0.3 4.3e-12 45.5 0.1 1.9 2 0 0 2 2 2 1 Proteasome subunit A N-terminal signature SBDS PF01172.18 gi|212223173|ref|YP_002306409.1| - 1.9e-25 88.8 0.0 2.9e-25 88.1 0.0 1.3 1 0 0 1 1 1 1 Shwachman-Bodian-Diamond syndrome (SBDS) protein SBDS_C PF09377.10 gi|212223173|ref|YP_002306409.1| - 2e-16 60.1 0.0 3.1e-16 59.4 0.0 1.3 1 0 0 1 1 1 1 SBDS protein C-terminal domain HpaB PF03241.13 gi|212223173|ref|YP_002306409.1| - 0.026 13.6 0.0 0.035 13.2 0.0 1.1 1 0 0 1 1 1 0 4-hydroxyphenylacetate 3-hydroxylase C terminal EFG_C PF00679.24 gi|212223173|ref|YP_002306409.1| - 0.053 13.5 0.0 0.1 12.6 0.0 1.4 1 0 0 1 1 1 0 Elongation factor G C-terminus KH_6 PF15985.5 gi|212223174|ref|YP_002306410.1| - 1.5e-08 34.9 1.6 1.8e-08 34.6 0.6 1.7 2 0 0 2 2 2 1 KH domain KH_1 PF00013.29 gi|212223174|ref|YP_002306410.1| - 8e-08 32.0 0.8 2.2e-07 30.6 0.8 1.8 1 0 0 1 1 1 1 KH domain ECR1_N PF14382.6 gi|212223174|ref|YP_002306410.1| - 5.7e-07 29.2 0.2 1.3e-06 28.1 0.2 1.6 1 0 0 1 1 1 1 Exosome complex exonuclease RRP4 N-terminal region KH_2 PF07650.17 gi|212223174|ref|YP_002306410.1| - 1.9e-06 27.6 1.5 1.9e-06 27.6 1.5 2.2 2 0 0 2 2 2 1 KH domain RNase_PH PF01138.21 gi|212223175|ref|YP_002306411.1| - 5e-36 124.1 0.0 8.7e-36 123.3 0.0 1.4 1 0 0 1 1 1 1 3' exoribonuclease family, domain 1 RNase_PH_C PF03725.15 gi|212223175|ref|YP_002306411.1| - 1.9e-16 59.8 0.2 3.4e-16 59.0 0.2 1.4 1 0 0 1 1 1 1 3' exoribonuclease family, domain 2 RNase_PH PF01138.21 gi|212223176|ref|YP_002306412.1| - 2.4e-29 102.5 0.0 3.7e-29 101.9 0.0 1.3 1 0 0 1 1 1 1 3' exoribonuclease family, domain 1 RNase_PH_C PF03725.15 gi|212223176|ref|YP_002306412.1| - 3.8e-15 55.7 1.7 7.7e-15 54.7 0.2 2.2 2 0 0 2 2 2 1 3' exoribonuclease family, domain 2 DUF2157 PF09925.9 gi|212223177|ref|YP_002306413.1| - 0.16 11.7 10.5 0.21 11.4 10.5 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2157) DUF202 PF02656.15 gi|212223177|ref|YP_002306413.1| - 0.54 10.7 8.4 13 6.3 8.4 2.1 1 1 0 1 1 1 0 Domain of unknown function (DUF202) Phage_holin_3_6 PF07332.11 gi|212223177|ref|YP_002306413.1| - 1.2 9.2 9.9 8 6.5 9.9 1.9 1 1 0 1 1 1 0 Putative Actinobacterial Holin-X, holin superfamily III SepF PF04472.12 gi|212223178|ref|YP_002306414.1| - 2.5e-14 53.3 0.2 3.7e-14 52.7 0.2 1.2 1 0 0 1 1 1 1 Cell division protein SepF CBFD_NFYB_HMF PF00808.23 gi|212223178|ref|YP_002306414.1| - 0.012 15.8 0.0 0.028 14.7 0.0 1.5 1 0 0 1 1 1 0 Histone-like transcription factor (CBF/NF-Y) and archaeal histone PE PF00934.20 gi|212223178|ref|YP_002306414.1| - 0.12 12.7 0.0 0.6 10.5 0.0 1.9 1 1 1 2 2 2 0 PE family zf-ZPR1 PF03367.13 gi|212223179|ref|YP_002306415.1| - 2.9e-38 131.2 0.0 3.5e-38 131.0 0.0 1.1 1 0 0 1 1 1 1 ZPR1 zinc-finger domain Lar_restr_allev PF14354.6 gi|212223179|ref|YP_002306415.1| - 1.1e-05 25.7 0.1 1.9e-05 24.9 0.1 1.4 1 0 0 1 1 1 1 Restriction alleviation protein Lar DnaJ_CXXCXGXG PF00684.19 gi|212223179|ref|YP_002306415.1| - 0.13 12.6 0.1 0.23 11.9 0.1 1.3 1 0 0 1 1 1 0 DnaJ central domain Prim_Zn_Ribbon PF08273.12 gi|212223179|ref|YP_002306415.1| - 0.19 12.1 4.2 2.3 8.6 4.2 2.2 1 1 0 1 1 1 0 Zinc-binding domain of primase-helicase Rubredoxin_2 PF18073.1 gi|212223179|ref|YP_002306415.1| - 0.2 11.4 0.3 18 5.1 0.1 2.2 2 0 0 2 2 2 0 Rubredoxin metal binding domain ASCH PF04266.14 gi|212223180|ref|YP_002306416.1| - 1.1e-05 25.9 0.0 1.5e-05 25.5 0.0 1.4 1 1 0 1 1 1 1 ASCH domain Homoserine_dh PF00742.19 gi|212223181|ref|YP_002306417.1| - 4.7e-51 173.1 0.1 6.4e-51 172.7 0.1 1.2 1 0 0 1 1 1 1 Homoserine dehydrogenase NAD_binding_3 PF03447.16 gi|212223181|ref|YP_002306417.1| - 7.6e-09 36.2 0.0 1.7e-08 35.1 0.0 1.6 1 1 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain ELFV_dehydrog PF00208.21 gi|212223181|ref|YP_002306417.1| - 4.2e-05 23.4 0.0 0.00011 22.0 0.0 1.6 1 1 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase Gp_dh_N PF00044.24 gi|212223181|ref|YP_002306417.1| - 0.028 14.8 0.1 0.14 12.5 0.1 2.3 1 1 0 1 1 1 0 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CBS PF00571.28 gi|212223182|ref|YP_002306418.1| - 1.5e-44 150.2 13.7 1e-12 48.3 0.8 4.2 4 0 0 4 4 4 4 CBS domain PRC PF05239.16 gi|212223182|ref|YP_002306418.1| - 0.00025 21.0 3.2 0.55 10.4 0.0 3.7 3 1 0 3 3 3 2 PRC-barrel domain sCache_3_2 PF17203.4 gi|212223182|ref|YP_002306418.1| - 0.041 14.0 3.1 32 4.6 0.0 3.9 3 1 0 3 3 3 0 Single cache domain 3 GGDEF_2 PF17853.1 gi|212223182|ref|YP_002306418.1| - 0.2 12.0 0.2 3.3 8.0 0.1 2.6 2 1 1 3 3 3 0 GGDEF-like domain IF3_N PF05198.16 gi|212223182|ref|YP_002306418.1| - 0.37 11.1 3.1 15 5.9 0.0 3.8 4 0 0 4 4 4 0 Translation initiation factor IF-3, N-terminal domain OAD_beta PF03977.13 gi|212223183|ref|YP_002306419.1| - 8.9e-158 524.8 30.5 1e-157 524.6 30.5 1.0 1 0 0 1 1 1 1 Na+-transporting oxaloacetate decarboxylase beta subunit TMEM40 PF15817.5 gi|212223183|ref|YP_002306419.1| - 0.18 11.6 0.1 0.18 11.6 0.1 2.0 2 1 0 2 2 2 0 Transmembrane protein 40 family DUF4271 PF14093.6 gi|212223183|ref|YP_002306419.1| - 9.9 6.0 10.1 11 5.9 5.7 2.8 2 1 1 3 3 3 0 Domain of unknown function (DUF4271) Biotin_lipoyl PF00364.22 gi|212223184|ref|YP_002306420.1| - 3.4e-26 90.9 1.4 6.4e-26 90.0 1.4 1.5 1 0 0 1 1 1 1 Biotin-requiring enzyme Biotin_lipoyl_2 PF13533.6 gi|212223184|ref|YP_002306420.1| - 1.5e-16 59.9 0.2 5.7e-08 32.5 0.0 2.5 1 1 1 2 2 2 2 Biotin-lipoyl like HlyD_3 PF13437.6 gi|212223184|ref|YP_002306420.1| - 8.5e-07 29.6 0.2 0.011 16.4 0.0 2.6 3 1 0 3 3 3 2 HlyD family secretion protein HlyD_D23 PF16576.5 gi|212223184|ref|YP_002306420.1| - 3.6e-05 23.1 0.1 0.056 12.7 0.0 2.2 1 1 1 2 2 2 2 Barrel-sandwich domain of CusB or HlyD membrane-fusion PTS_EIIA_1 PF00358.20 gi|212223184|ref|YP_002306420.1| - 6.3e-05 22.7 0.1 0.053 13.3 0.0 2.5 1 1 2 3 3 3 2 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 RnfC_N PF13375.6 gi|212223184|ref|YP_002306420.1| - 0.00026 20.9 0.1 0.0027 17.6 0.0 2.1 1 1 1 2 2 2 1 RnfC Barrel sandwich hybrid domain NQRA PF05896.11 gi|212223184|ref|YP_002306420.1| - 0.0044 16.5 0.1 0.028 13.9 0.1 2.1 1 1 1 2 2 2 1 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) GCV_H PF01597.19 gi|212223184|ref|YP_002306420.1| - 0.0049 16.8 0.1 0.0083 16.0 0.1 1.4 1 0 0 1 1 1 1 Glycine cleavage H-protein Peptidase_M23 PF01551.22 gi|212223184|ref|YP_002306420.1| - 0.016 15.4 0.7 11 6.3 0.1 2.8 1 1 0 1 1 1 0 Peptidase family M23 DUF5525 PF17663.1 gi|212223184|ref|YP_002306420.1| - 0.13 10.3 5.2 0.14 10.2 5.2 1.0 1 0 0 1 1 1 0 Family of unknown function (DUF5525) YqfD PF06898.11 gi|212223184|ref|YP_002306420.1| - 1.6 7.5 7.4 1.6 7.5 0.1 2.6 2 1 1 3 3 3 0 Putative stage IV sporulation protein YqfD OAD_gamma PF04277.13 gi|212223185|ref|YP_002306421.1| - 1.4e-13 51.2 0.1 1.9e-13 50.8 0.1 1.2 1 0 0 1 1 1 1 Oxaloacetate decarboxylase, gamma chain Phage_holin_3_6 PF07332.11 gi|212223185|ref|YP_002306421.1| - 0.055 13.5 1.5 0.16 12.0 0.2 2.0 2 0 0 2 2 2 0 Putative Actinobacterial Holin-X, holin superfamily III Carboxyl_trans PF01039.22 gi|212223186|ref|YP_002306422.1| - 4.3e-204 678.7 0.6 4.9e-204 678.6 0.6 1.0 1 0 0 1 1 1 1 Carboxyl transferase domain MdcE PF06833.11 gi|212223186|ref|YP_002306422.1| - 3.2e-07 30.1 0.1 6.9e-07 29.0 0.1 1.5 1 0 0 1 1 1 1 Malonate decarboxylase gamma subunit (MdcE) eIF-5_eIF-2B PF01873.17 gi|212223187|ref|YP_002306423.1| - 1.2e-35 122.0 0.0 1.3e-35 121.7 0.0 1.0 1 0 0 1 1 1 1 Domain found in IF2B/IF5 Lar_restr_allev PF14354.6 gi|212223187|ref|YP_002306423.1| - 0.0043 17.4 0.7 0.0071 16.7 0.7 1.3 1 0 0 1 1 1 1 Restriction alleviation protein Lar zf-TFIIB PF13453.6 gi|212223187|ref|YP_002306423.1| - 0.0066 15.8 0.9 0.011 15.1 0.9 1.3 1 0 0 1 1 1 1 Transcription factor zinc-finger FdhE PF04216.12 gi|212223187|ref|YP_002306423.1| - 0.0082 16.1 0.1 0.011 15.6 0.1 1.5 1 1 0 1 1 1 1 Protein involved in formate dehydrogenase formation Tmemb_55A PF09788.9 gi|212223187|ref|YP_002306423.1| - 0.013 14.7 0.0 0.015 14.4 0.0 1.1 1 0 0 1 1 1 0 Transmembrane protein 55A Zn-ribbon_8 PF09723.10 gi|212223187|ref|YP_002306423.1| - 0.015 15.4 0.2 1.2 9.3 0.0 2.4 2 0 0 2 2 2 0 Zinc ribbon domain Prok-RING_1 PF14446.6 gi|212223187|ref|YP_002306423.1| - 0.021 14.7 0.9 0.1 12.5 0.1 2.0 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 Zn_Tnp_IS1595 PF12760.7 gi|212223187|ref|YP_002306423.1| - 0.024 14.6 0.5 0.04 13.9 0.5 1.3 1 0 0 1 1 1 0 Transposase zinc-ribbon domain Elf1 PF05129.13 gi|212223187|ref|YP_002306423.1| - 0.053 13.6 0.1 0.091 12.8 0.1 1.3 1 0 0 1 1 1 0 Transcription elongation factor Elf1 like DUF35_N PF12172.8 gi|212223187|ref|YP_002306423.1| - 0.12 12.3 4.7 1.2 9.1 0.2 2.3 1 1 1 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zf-NADH-PPase PF09297.11 gi|212223187|ref|YP_002306423.1| - 0.13 12.0 0.4 6.6 6.5 0.0 2.2 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain zf-ribbon_3 PF13248.6 gi|212223187|ref|YP_002306423.1| - 0.43 10.1 3.0 1.4 8.4 0.3 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|212223187|ref|YP_002306423.1| - 0.58 9.9 4.7 5.6 6.8 0.1 2.5 3 0 0 3 3 3 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.12 gi|212223187|ref|YP_002306423.1| - 0.63 9.6 3.4 2.3 7.8 3.4 1.9 1 1 0 1 1 1 0 TFIIB zinc-binding zf-RRN7 PF11781.8 gi|212223187|ref|YP_002306423.1| - 0.95 9.2 2.9 9.5 6.0 0.2 2.4 2 0 0 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 zf_C2H2_13 PF18508.1 gi|212223187|ref|YP_002306423.1| - 3.3 7.4 5.0 6.8 6.4 0.3 2.8 2 1 1 3 3 3 0 Zinc finger domain MCM PF00493.23 gi|212223188|ref|YP_002306424.1| - 4.7e-93 310.4 0.0 3.5e-69 232.3 0.0 2.3 2 0 0 2 2 2 2 MCM P-loop domain MCM_OB PF17207.3 gi|212223188|ref|YP_002306424.1| - 1.7e-35 121.6 0.0 3.1e-35 120.8 0.0 1.3 1 0 0 1 1 1 1 MCM OB domain MCM_lid PF17855.1 gi|212223188|ref|YP_002306424.1| - 3.5e-31 107.5 3.0 5e-31 107.0 1.4 2.1 2 0 0 2 2 2 1 MCM AAA-lid domain LAGLIDADG_3 PF14528.6 gi|212223188|ref|YP_002306424.1| - 4.3e-30 103.9 1.0 4.2e-20 71.8 0.1 2.9 2 0 0 2 2 2 2 LAGLIDADG-like domain Intein_splicing PF14890.6 gi|212223188|ref|YP_002306424.1| - 1e-26 93.5 0.0 2.9e-26 92.0 0.0 1.9 1 0 0 1 1 1 1 Intein splicing domain MCM_N PF14551.6 gi|212223188|ref|YP_002306424.1| - 9.9e-12 45.4 0.7 4.6e-11 43.2 0.1 2.4 2 0 0 2 2 2 1 MCM N-terminal domain Hom_end PF05204.14 gi|212223188|ref|YP_002306424.1| - 1.1e-07 32.0 0.0 0.00089 19.4 0.0 2.5 2 0 0 2 2 2 2 Homing endonuclease HTH_3 PF01381.22 gi|212223188|ref|YP_002306424.1| - 1.9e-07 31.1 0.2 6.3e-07 29.3 0.2 2.0 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.6 gi|212223188|ref|YP_002306424.1| - 3.7e-06 27.2 0.1 1.5e-05 25.2 0.1 2.1 1 0 0 1 1 1 1 Helix-turn-helix domain Mg_chelatase PF01078.21 gi|212223188|ref|YP_002306424.1| - 2.6e-05 23.7 0.0 0.00014 21.3 0.0 2.0 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI HTH_19 PF12844.7 gi|212223188|ref|YP_002306424.1| - 0.0003 20.7 0.5 0.0017 18.3 0.2 2.5 2 0 0 2 2 2 1 Helix-turn-helix domain Sigma54_activat PF00158.26 gi|212223188|ref|YP_002306424.1| - 0.00083 19.1 0.0 0.0022 17.7 0.0 1.6 1 0 0 1 1 1 1 Sigma-54 interaction domain AAA_3 PF07726.11 gi|212223188|ref|YP_002306424.1| - 0.0021 17.9 0.0 0.021 14.7 0.0 2.4 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.14 gi|212223188|ref|YP_002306424.1| - 0.0026 17.8 0.0 0.21 11.6 0.0 2.6 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) TackOD1 PF18551.1 gi|212223188|ref|YP_002306424.1| - 0.0046 16.7 0.3 0.0092 15.7 0.3 1.4 1 0 0 1 1 1 1 Thaumarchaeal output domain 1 Zn-ribbon_8 PF09723.10 gi|212223188|ref|YP_002306424.1| - 0.0089 16.1 0.4 0.019 15.1 0.4 1.5 1 0 0 1 1 1 1 Zinc ribbon domain HypA PF01155.19 gi|212223188|ref|YP_002306424.1| - 0.019 15.0 0.1 0.059 13.4 0.1 1.8 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Hint PF01079.20 gi|212223188|ref|YP_002306424.1| - 0.085 12.4 0.0 0.17 11.4 0.0 1.4 1 0 0 1 1 1 0 Hint module LAGLIDADG_WhiA PF14527.6 gi|212223188|ref|YP_002306424.1| - 0.3 11.2 1.5 30 4.8 0.0 3.3 3 1 0 3 3 2 0 WhiA LAGLIDADG-like domain Sld5 PF05916.11 gi|212223189|ref|YP_002306425.1| - 1.5e-08 35.1 2.0 1.9e-08 34.7 2.0 1.1 1 0 0 1 1 1 1 GINS complex protein Med18 PF09637.10 gi|212223189|ref|YP_002306425.1| - 0.013 15.4 0.0 0.015 15.2 0.0 1.2 1 0 0 1 1 1 0 Med18 protein Metallophos_2 PF12850.7 gi|212223190|ref|YP_002306426.1| - 1.9e-33 116.0 0.2 2.2e-33 115.8 0.2 1.0 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|212223190|ref|YP_002306426.1| - 3e-08 34.4 1.1 3.7e-06 27.6 0.1 2.1 1 1 1 2 2 2 2 Calcineurin-like phosphoesterase Metallophos_3 PF14582.6 gi|212223190|ref|YP_002306426.1| - 0.0026 17.1 0.2 0.11 11.8 0.0 2.1 1 1 1 2 2 2 2 Metallophosphoesterase, calcineurin superfamily ETF PF01012.21 gi|212223190|ref|YP_002306426.1| - 0.037 13.9 0.0 0.048 13.5 0.0 1.1 1 0 0 1 1 1 0 Electron transfer flavoprotein domain Fe_dep_repr_C PF02742.15 gi|212223190|ref|YP_002306426.1| - 0.075 13.1 0.0 0.12 12.4 0.0 1.3 1 0 0 1 1 1 0 Iron dependent repressor, metal binding and dimerisation domain DnaB_bind PF10410.9 gi|212223191|ref|YP_002306427.1| - 0.048 13.9 0.0 2.6 8.3 0.0 2.5 2 0 0 2 2 2 0 DnaB-helicase binding domain of primase UPF0193 PF05250.11 gi|212223192|ref|YP_002306428.1| - 0.038 13.8 1.8 0.062 13.1 1.8 1.3 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0193) BCNT PF07572.12 gi|212223192|ref|YP_002306428.1| - 0.079 13.0 1.6 0.11 12.6 0.7 1.7 2 0 0 2 2 2 0 Bucentaur or craniofacial development RTC PF01137.21 gi|212223193|ref|YP_002306429.1| - 9.4e-79 263.7 0.0 1.1e-78 263.5 0.0 1.0 1 0 0 1 1 1 1 RNA 3'-terminal phosphate cyclase RTC_insert PF05189.13 gi|212223193|ref|YP_002306429.1| - 3.7e-23 82.0 0.0 6.6e-23 81.2 0.0 1.4 1 0 0 1 1 1 1 RNA 3'-terminal phosphate cyclase (RTC), insert domain DUF2754 PF10953.8 gi|212223194|ref|YP_002306430.1| - 0.42 10.9 7.6 0.22 11.8 5.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF2754) TipE PF16972.5 gi|212223194|ref|YP_002306430.1| - 0.73 8.9 2.1 1 8.5 2.1 1.1 1 0 0 1 1 1 0 Na+ channel auxiliary subunit TipE TatD_DNase PF01026.21 gi|212223195|ref|YP_002306431.1| - 7.7e-31 107.4 0.0 9.1e-31 107.1 0.0 1.0 1 0 0 1 1 1 1 TatD related DNase AP_endonuc_2 PF01261.24 gi|212223195|ref|YP_002306431.1| - 0.038 13.4 0.1 0.064 12.7 0.1 1.5 1 1 0 1 1 1 0 Xylose isomerase-like TIM barrel Cas_VVA1548 PF09652.10 gi|212223195|ref|YP_002306431.1| - 0.094 13.0 0.0 0.84 9.9 0.0 2.2 2 0 0 2 2 2 0 Putative CRISPR-associated protein (Cas_VVA1548) GTP_EFTU_D4 PF14578.6 gi|212223196|ref|YP_002306432.1| - 1.1e-10 41.3 0.9 1.4e-10 40.9 0.9 1.1 1 0 0 1 1 1 1 Elongation factor Tu domain 4 GTP_EFTU_D2 PF03144.25 gi|212223196|ref|YP_002306432.1| - 0.0011 19.3 1.1 0.002 18.5 1.1 1.5 1 0 0 1 1 1 1 Elongation factor Tu domain 2 NiFeSe_Hases PF00374.19 gi|212223197|ref|YP_002306433.1| - 8.5e-33 114.0 0.0 2.9e-17 62.7 0.0 2.4 2 1 0 2 2 2 2 Nickel-dependent hydrogenase Oxidored_q6 PF01058.22 gi|212223198|ref|YP_002306434.1| - 1.1e-23 83.5 0.0 1.5e-23 83.0 0.0 1.2 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit ASFV_p27 PF06556.11 gi|212223198|ref|YP_002306434.1| - 0.14 12.3 0.1 0.23 11.5 0.1 1.3 1 0 0 1 1 1 0 IAP-like protein p27 C-terminus DHODB_Fe-S_bind PF10418.9 gi|212223199|ref|YP_002306435.1| - 1.2e-13 50.6 1.6 3e-13 49.3 1.6 1.7 1 0 0 1 1 1 1 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B NAD_binding_1 PF00175.21 gi|212223199|ref|YP_002306435.1| - 3.4e-11 43.8 0.0 1.1e-10 42.1 0.0 1.8 1 1 0 1 1 1 1 Oxidoreductase NAD-binding domain FAD_binding_6 PF00970.24 gi|212223199|ref|YP_002306435.1| - 4.5e-08 33.3 0.0 7.4e-08 32.7 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase FAD-binding domain FAD_binding_8 PF08022.12 gi|212223199|ref|YP_002306435.1| - 0.0054 16.8 0.0 0.011 15.8 0.0 1.5 1 1 0 1 1 1 1 FAD-binding domain DUF3105 PF11303.8 gi|212223199|ref|YP_002306435.1| - 0.023 14.9 0.1 0.066 13.4 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF3105) Fer4_22 PF17179.4 gi|212223200|ref|YP_002306436.1| - 1.8e-24 86.4 13.9 3.4e-24 85.5 13.9 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|212223200|ref|YP_002306436.1| - 3e-05 24.4 12.5 0.0016 18.8 13.5 2.6 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|212223200|ref|YP_002306436.1| - 0.00014 22.0 15.4 0.038 14.2 15.6 2.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|212223200|ref|YP_002306436.1| - 0.00015 21.8 17.7 0.0013 18.8 0.4 2.7 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|212223200|ref|YP_002306436.1| - 0.0025 17.8 11.7 0.01 15.9 2.4 3.2 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|212223200|ref|YP_002306436.1| - 0.0027 18.2 18.6 0.076 13.6 3.2 3.0 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|212223200|ref|YP_002306436.1| - 0.0097 16.4 18.0 0.1 13.2 3.3 2.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.27 gi|212223200|ref|YP_002306436.1| - 0.04 13.8 26.2 0.05 13.4 4.6 3.2 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_16 PF13484.6 gi|212223200|ref|YP_002306436.1| - 0.18 12.8 20.0 4.3 8.4 4.7 2.9 1 1 1 2 2 2 0 4Fe-4S double cluster binding domain Fer4_21 PF14697.6 gi|212223200|ref|YP_002306436.1| - 0.27 11.4 19.8 0.28 11.3 2.0 2.7 2 1 1 3 3 3 0 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|212223200|ref|YP_002306436.1| - 0.42 10.8 21.5 0.42 10.8 4.8 3.4 3 0 0 3 3 3 0 4Fe-4S binding domain DHODB_Fe-S_bind PF10418.9 gi|212223201|ref|YP_002306437.1| - 2.6e-13 49.5 2.5 5.1e-13 48.6 2.5 1.5 1 0 0 1 1 1 1 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B FAD_binding_6 PF00970.24 gi|212223201|ref|YP_002306437.1| - 0.00038 20.8 0.0 0.00067 20.0 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase FAD-binding domain NAD_binding_1 PF00175.21 gi|212223201|ref|YP_002306437.1| - 0.0014 19.3 0.0 0.0028 18.3 0.0 1.5 1 1 0 1 1 1 1 Oxidoreductase NAD-binding domain Glyco_transf_4 PF13439.6 gi|212223201|ref|YP_002306437.1| - 0.0059 16.6 0.0 0.0087 16.1 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Fer2_3 PF13085.6 gi|212223201|ref|YP_002306437.1| - 0.17 11.9 0.0 0.31 11.1 0.0 1.4 1 0 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain Pyr_redox_2 PF07992.14 gi|212223202|ref|YP_002306438.1| - 2.4e-41 141.9 0.1 6.3e-41 140.5 0.1 1.6 1 1 1 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Fer4_20 PF14691.6 gi|212223202|ref|YP_002306438.1| - 1.6e-37 127.7 0.4 2.4e-37 127.1 0.4 1.3 1 0 0 1 1 1 1 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Pyr_redox_3 PF13738.6 gi|212223202|ref|YP_002306438.1| - 2.4e-17 63.2 1.3 4.9e-11 42.4 0.0 2.6 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|212223202|ref|YP_002306438.1| - 6.4e-16 58.7 3.9 1.8e-07 31.6 0.1 3.4 3 1 1 4 4 3 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|212223202|ref|YP_002306438.1| - 3.2e-11 43.3 0.2 1.3e-09 38.1 0.0 2.9 3 0 0 3 3 3 1 NAD(P)-binding Rossmann-like domain AlaDh_PNT_C PF01262.21 gi|212223202|ref|YP_002306438.1| - 3.7e-09 36.2 0.1 0.0005 19.4 0.0 2.2 2 0 0 2 2 2 2 Alanine dehydrogenase/PNT, C-terminal domain HI0933_like PF03486.14 gi|212223202|ref|YP_002306438.1| - 5.5e-09 35.2 2.2 8.1e-07 28.1 0.3 2.2 2 0 0 2 2 2 2 HI0933-like protein GIDA PF01134.22 gi|212223202|ref|YP_002306438.1| - 4.9e-08 32.5 1.0 0.00011 21.4 0.1 2.3 2 0 0 2 2 2 2 Glucose inhibited division protein A Thi4 PF01946.17 gi|212223202|ref|YP_002306438.1| - 2.2e-07 30.4 0.3 2e-06 27.2 0.1 2.0 2 0 0 2 2 2 1 Thi4 family FAD_oxidored PF12831.7 gi|212223202|ref|YP_002306438.1| - 7.6e-07 28.8 1.4 0.0062 15.9 0.0 2.2 2 0 0 2 2 2 2 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|212223202|ref|YP_002306438.1| - 8.2e-07 28.4 4.3 4.5e-05 22.7 0.5 3.0 3 0 0 3 3 3 1 FAD binding domain NAD_binding_7 PF13241.6 gi|212223202|ref|YP_002306438.1| - 1.7e-06 28.4 0.5 0.0086 16.5 0.1 2.6 2 1 0 2 2 2 2 Putative NAD(P)-binding FAD_binding_3 PF01494.19 gi|212223202|ref|YP_002306438.1| - 2e-06 27.3 0.2 0.00015 21.1 0.1 2.1 2 0 0 2 2 2 1 FAD binding domain DAO PF01266.24 gi|212223202|ref|YP_002306438.1| - 1.9e-05 24.5 1.9 0.00011 21.9 0.4 2.6 3 0 0 3 3 3 1 FAD dependent oxidoreductase 2-Hacid_dh_C PF02826.19 gi|212223202|ref|YP_002306438.1| - 4.9e-05 22.8 0.2 0.3 10.4 0.0 2.3 2 0 0 2 2 2 2 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 3HCDH_N PF02737.18 gi|212223202|ref|YP_002306438.1| - 0.00015 21.7 0.5 0.088 12.7 0.0 2.2 2 0 0 2 2 2 2 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Amino_oxidase PF01593.24 gi|212223202|ref|YP_002306438.1| - 0.00017 21.0 0.2 0.0036 16.7 0.0 2.2 2 0 0 2 2 2 1 Flavin containing amine oxidoreductase Shikimate_DH PF01488.20 gi|212223202|ref|YP_002306438.1| - 0.00021 21.4 0.1 5.2 7.1 0.0 3.3 3 0 0 3 3 3 1 Shikimate / quinate 5-dehydrogenase PALP PF00291.25 gi|212223202|ref|YP_002306438.1| - 0.00055 19.4 0.3 1.2 8.5 0.0 2.5 2 1 0 2 2 2 2 Pyridoxal-phosphate dependent enzyme F420_oxidored PF03807.17 gi|212223202|ref|YP_002306438.1| - 0.00094 19.7 0.4 0.62 10.7 0.1 2.6 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent FMO-like PF00743.19 gi|212223202|ref|YP_002306438.1| - 0.0025 16.3 0.0 1.2 7.4 0.0 2.1 2 0 0 2 2 2 2 Flavin-binding monooxygenase-like XdhC_C PF13478.6 gi|212223202|ref|YP_002306438.1| - 0.0031 18.0 0.1 2.7 8.5 0.0 2.5 2 0 0 2 2 2 1 XdhC Rossmann domain Lycopene_cycl PF05834.12 gi|212223202|ref|YP_002306438.1| - 0.0038 16.3 0.2 0.0038 16.3 0.2 1.4 2 0 0 2 2 1 1 Lycopene cyclase protein IlvN PF07991.12 gi|212223202|ref|YP_002306438.1| - 0.0059 16.2 0.0 0.85 9.2 0.0 2.6 3 0 0 3 3 2 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain NAD_binding_9 PF13454.6 gi|212223202|ref|YP_002306438.1| - 0.016 15.2 2.3 0.018 15.0 0.2 2.2 3 0 0 3 3 3 0 FAD-NAD(P)-binding UDPG_MGDP_dh_N PF03721.14 gi|212223202|ref|YP_002306438.1| - 0.023 14.3 0.1 0.064 12.8 0.1 1.8 1 1 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain K_oxygenase PF13434.6 gi|212223202|ref|YP_002306438.1| - 0.038 13.1 0.0 1.7 7.7 0.0 2.2 2 0 0 2 2 2 0 L-lysine 6-monooxygenase (NADPH-requiring) TrkA_N PF02254.18 gi|212223202|ref|YP_002306438.1| - 0.076 13.3 0.1 3.9 7.8 0.0 2.5 2 0 0 2 2 2 0 TrkA-N domain Fer4_2 PF12797.7 gi|212223202|ref|YP_002306438.1| - 0.21 11.7 2.5 0.72 10.1 2.5 1.9 1 0 0 1 1 1 0 4Fe-4S binding domain AdoHcyase_NAD PF00670.21 gi|212223202|ref|YP_002306438.1| - 0.44 10.6 5.0 2.2 8.3 0.1 3.2 4 1 0 4 4 3 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain Fer4_10 PF13237.6 gi|212223202|ref|YP_002306438.1| - 0.44 10.7 5.0 0.86 9.8 5.0 1.5 1 0 0 1 1 1 0 4Fe-4S dicluster domain tRNA-synt_2 PF00152.20 gi|212223203|ref|YP_002306439.1| - 5.7e-43 147.2 0.0 6.5e-43 147.0 0.0 1.0 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) DUF1884 PF08967.10 gi|212223203|ref|YP_002306439.1| - 0.11 12.7 0.1 0.28 11.5 0.1 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF1884) T2SSE PF00437.20 gi|212223204|ref|YP_002306440.1| - 1e-10 41.1 0.2 1.4e-10 40.7 0.2 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_16 PF13191.6 gi|212223204|ref|YP_002306440.1| - 0.00043 20.7 0.0 0.00089 19.7 0.0 1.3 1 1 0 1 1 1 1 AAA ATPase domain AAA_14 PF13173.6 gi|212223204|ref|YP_002306440.1| - 0.00087 19.3 0.5 0.0021 18.1 0.5 1.7 1 1 0 1 1 1 1 AAA domain ATPase PF06745.13 gi|212223204|ref|YP_002306440.1| - 0.0017 17.8 0.6 0.46 9.8 0.3 2.2 1 1 1 2 2 2 2 KaiC AAA_5 PF07728.14 gi|212223204|ref|YP_002306440.1| - 0.0049 16.9 0.0 0.008 16.2 0.0 1.3 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) MobB PF03205.14 gi|212223204|ref|YP_002306440.1| - 0.0078 16.1 0.0 0.019 14.9 0.0 1.7 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B TniB PF05621.11 gi|212223204|ref|YP_002306440.1| - 0.0082 15.6 0.2 0.14 11.6 0.2 2.3 1 1 0 1 1 1 1 Bacterial TniB protein cobW PF02492.19 gi|212223204|ref|YP_002306440.1| - 0.011 15.4 0.2 0.04 13.5 0.2 2.1 1 1 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_29 PF13555.6 gi|212223204|ref|YP_002306440.1| - 0.021 14.6 0.0 0.047 13.4 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|212223204|ref|YP_002306440.1| - 0.024 14.9 0.0 0.072 13.4 0.0 1.8 1 1 0 1 1 1 0 AAA domain S-AdoMet_synt_M PF02772.16 gi|212223204|ref|YP_002306440.1| - 0.028 14.7 0.5 0.048 13.9 0.5 1.6 1 1 0 1 1 1 0 S-adenosylmethionine synthetase, central domain AAA_7 PF12775.7 gi|212223204|ref|YP_002306440.1| - 0.029 13.9 0.1 0.19 11.3 0.0 2.0 1 1 1 2 2 2 0 P-loop containing dynein motor region Roc PF08477.13 gi|212223204|ref|YP_002306440.1| - 0.037 14.3 0.1 0.18 12.0 0.0 2.1 2 1 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase Kinase-PPPase PF03618.14 gi|212223204|ref|YP_002306440.1| - 0.047 13.5 1.0 0.85 9.3 0.1 2.1 1 1 0 2 2 2 0 Kinase/pyrophosphorylase FtsK_SpoIIIE PF01580.18 gi|212223204|ref|YP_002306440.1| - 0.05 12.9 0.0 0.13 11.6 0.0 1.6 2 0 0 2 2 2 0 FtsK/SpoIIIE family AAA_27 PF13514.6 gi|212223204|ref|YP_002306440.1| - 0.053 13.1 0.0 0.089 12.4 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_24 PF13479.6 gi|212223204|ref|YP_002306440.1| - 0.053 13.2 0.2 0.42 10.3 0.0 2.3 2 1 0 2 2 2 0 AAA domain AAA_25 PF13481.6 gi|212223204|ref|YP_002306440.1| - 0.055 13.0 0.2 0.86 9.1 0.1 2.1 1 1 1 2 2 2 0 AAA domain AAA_18 PF13238.6 gi|212223204|ref|YP_002306440.1| - 0.066 13.8 0.0 0.15 12.6 0.0 1.8 1 1 0 1 1 1 0 AAA domain Zeta_toxin PF06414.12 gi|212223204|ref|YP_002306440.1| - 0.066 12.5 0.0 0.11 11.8 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin Sulfotransfer_1 PF00685.27 gi|212223204|ref|YP_002306440.1| - 0.072 12.6 0.0 0.28 10.6 0.0 1.8 1 1 1 2 2 2 0 Sulfotransferase domain mRNA_decap_C PF16741.5 gi|212223204|ref|YP_002306440.1| - 0.077 12.3 0.0 0.19 11.0 0.0 1.6 1 0 0 1 1 1 0 mRNA-decapping enzyme C-terminus CobU PF02283.16 gi|212223204|ref|YP_002306440.1| - 0.1 12.2 0.1 0.43 10.1 0.1 2.1 1 1 0 1 1 1 0 Cobinamide kinase / cobinamide phosphate guanyltransferase TrwB_AAD_bind PF10412.9 gi|212223204|ref|YP_002306440.1| - 0.11 11.3 0.0 0.26 10.2 0.0 1.5 2 0 0 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain B12-binding PF02310.19 gi|212223204|ref|YP_002306440.1| - 0.12 12.4 0.0 0.23 11.5 0.0 1.6 1 1 0 1 1 1 0 B12 binding domain Mg_chelatase PF01078.21 gi|212223204|ref|YP_002306440.1| - 0.19 11.1 0.0 0.48 9.8 0.0 1.6 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI PrcB_C PF14343.6 gi|212223205|ref|YP_002306441.1| - 0.24 11.6 0.2 0.24 11.6 0.2 2.0 3 0 0 3 3 3 0 PrcB C-terminal Aminotran_5 PF00266.19 gi|212223206|ref|YP_002306442.1| - 2.2e-39 135.5 0.0 2.6e-39 135.2 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-V Aminotran_1_2 PF00155.21 gi|212223206|ref|YP_002306442.1| - 5.3e-05 22.6 0.0 7.5e-05 22.1 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class I and II MFS_1 PF07690.16 gi|212223207|ref|YP_002306443.1| - 6.1e-18 64.9 52.0 4.5e-13 48.9 27.2 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|212223207|ref|YP_002306443.1| - 0.0036 16.2 16.2 0.0036 16.2 16.2 3.0 1 1 1 3 3 3 1 Sugar (and other) transporter Ribosomal_L16 PF00252.18 gi|212223208|ref|YP_002306444.1| - 4.5e-34 117.3 0.2 5.9e-34 116.9 0.2 1.1 1 0 0 1 1 1 1 Ribosomal protein L16p/L10e Lig_C PF18330.1 gi|212223209|ref|YP_002306445.1| - 2.1e-27 95.6 0.1 4.1e-27 94.7 0.1 1.5 1 0 0 1 1 1 1 Ligase Pab1020 C-terminal region RNA_ligase PF09414.10 gi|212223209|ref|YP_002306445.1| - 2.2e-19 70.3 0.2 4.1e-19 69.5 0.1 1.5 2 0 0 2 2 2 1 RNA ligase DNA_ligase_A_M PF01068.21 gi|212223209|ref|YP_002306445.1| - 3.7e-06 26.7 0.1 0.082 12.5 0.0 2.3 2 0 0 2 2 2 2 ATP dependent DNA ligase domain WHIM1 PF15612.6 gi|212223209|ref|YP_002306445.1| - 0.15 11.7 0.0 0.38 10.3 0.0 1.7 1 0 0 1 1 1 0 WSTF, HB1, Itc1p, MBD9 motif 1 Methyltrn_RNA_3 PF02598.17 gi|212223210|ref|YP_002306446.1| - 2e-49 168.6 0.0 2.9e-49 168.1 0.0 1.2 1 0 0 1 1 1 1 Putative RNA methyltransferase SpoU_methylase PF00588.19 gi|212223210|ref|YP_002306446.1| - 5.4e-05 23.4 0.0 0.075 13.2 0.0 2.3 2 0 0 2 2 2 2 SpoU rRNA Methylase family Ribosomal_L3 PF00297.22 gi|212223211|ref|YP_002306447.1| - 5.4e-90 302.0 0.2 6.6e-90 301.8 0.2 1.1 1 0 0 1 1 1 1 Ribosomal protein L3 Ribosomal_L4 PF00573.22 gi|212223212|ref|YP_002306448.1| - 1.3e-49 168.5 0.4 1.6e-49 168.3 0.4 1.0 1 0 0 1 1 1 1 Ribosomal protein L4/L1 family DUF2149 PF09919.9 gi|212223212|ref|YP_002306448.1| - 0.033 14.4 0.1 0.065 13.5 0.1 1.5 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2149) Ribosomal_L23 PF00276.20 gi|212223213|ref|YP_002306449.1| - 1.4e-20 73.4 7.0 1.6e-19 70.1 7.0 1.9 1 1 0 1 1 1 1 Ribosomal protein L23 TusA PF01206.17 gi|212223213|ref|YP_002306449.1| - 0.0015 18.3 0.3 0.002 17.9 0.3 1.3 1 0 0 1 1 1 1 Sulfurtransferase TusA HMGL-like PF00682.19 gi|212223213|ref|YP_002306449.1| - 0.047 13.2 0.4 0.049 13.2 0.4 1.0 1 0 0 1 1 1 0 HMGL-like Ribosomal_L2_C PF03947.18 gi|212223214|ref|YP_002306450.1| - 6.8e-42 142.6 0.5 1.3e-41 141.8 0.5 1.4 1 0 0 1 1 1 1 Ribosomal Proteins L2, C-terminal domain Ribosomal_L2 PF00181.23 gi|212223214|ref|YP_002306450.1| - 8e-21 73.8 0.0 2.2e-20 72.4 0.0 1.8 1 0 0 1 1 1 1 Ribosomal Proteins L2, RNA binding domain Ribosomal_S19 PF00203.21 gi|212223215|ref|YP_002306451.1| - 9.1e-37 124.8 0.5 1.2e-36 124.4 0.5 1.2 1 0 0 1 1 1 1 Ribosomal protein S19 bZIP_Maf PF03131.17 gi|212223215|ref|YP_002306451.1| - 0.0057 17.2 0.3 0.0088 16.5 0.3 1.3 1 0 0 1 1 1 1 bZIP Maf transcription factor Ribosomal_L39 PF00832.20 gi|212223215|ref|YP_002306451.1| - 0.025 14.2 0.7 0.049 13.3 0.7 1.5 1 0 0 1 1 1 0 Ribosomal L39 protein VHP PF02209.19 gi|212223215|ref|YP_002306451.1| - 0.026 14.6 0.0 0.068 13.3 0.0 1.7 1 0 0 1 1 1 0 Villin headpiece domain Citrate_synt PF00285.21 gi|212223215|ref|YP_002306451.1| - 0.053 12.6 0.0 0.053 12.6 0.0 1.2 1 0 0 1 1 1 0 Citrate synthase, C-terminal domain pPIWI_RE_Z PF18155.1 gi|212223215|ref|YP_002306451.1| - 0.069 13.0 0.0 0.089 12.6 0.0 1.1 1 0 0 1 1 1 0 pPIWI RE three-gene island domain Z Ribosomal_L22 PF00237.19 gi|212223216|ref|YP_002306452.1| - 2.3e-32 111.3 0.0 2.8e-32 111.0 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L22p/L17e Ribosomal_S3_C PF00189.20 gi|212223217|ref|YP_002306453.1| - 2.7e-24 85.5 1.4 4.9e-24 84.6 1.4 1.5 1 0 0 1 1 1 1 Ribosomal protein S3, C-terminal domain KH_2 PF07650.17 gi|212223217|ref|YP_002306453.1| - 1.5e-15 56.7 0.7 3.2e-15 55.7 0.2 1.8 2 0 0 2 2 2 1 KH domain KH_1 PF00013.29 gi|212223217|ref|YP_002306453.1| - 0.11 12.4 0.2 0.11 12.4 0.2 2.5 3 0 0 3 3 3 0 KH domain Mucin_bdg PF03272.13 gi|212223217|ref|YP_002306453.1| - 0.12 12.4 0.0 0.19 11.8 0.0 1.3 1 0 0 1 1 1 0 Putative mucin or carbohydrate-binding module Ribosomal_L29 PF00831.23 gi|212223218|ref|YP_002306454.1| - 8.4e-18 64.1 5.4 9.9e-18 63.9 5.4 1.1 1 0 0 1 1 1 1 Ribosomal L29 protein DUF1192 PF06698.11 gi|212223218|ref|YP_002306454.1| - 2.4 8.3 8.0 0.083 13.0 1.3 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF1192) SUI1 PF01253.22 gi|212223219|ref|YP_002306455.1| - 5.9e-21 74.8 0.8 7.2e-21 74.5 0.8 1.1 1 0 0 1 1 1 1 Translation initiation factor SUI1 Img2 PF05046.14 gi|212223219|ref|YP_002306455.1| - 6.7e-05 23.1 0.4 8.9e-05 22.7 0.4 1.3 1 0 0 1 1 1 1 Mitochondrial large subunit ribosomal protein (Img2) UPF0086 PF01868.16 gi|212223220|ref|YP_002306456.1| - 1.9e-19 69.3 0.0 2.5e-19 69.0 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function UPF0086 Ribosomal_S17 PF00366.20 gi|212223221|ref|YP_002306457.1| - 1.4e-25 89.2 0.3 1.7e-25 88.9 0.3 1.1 1 0 0 1 1 1 1 Ribosomal protein S17 DUF4537 PF15057.6 gi|212223221|ref|YP_002306457.1| - 0.035 14.1 0.0 0.04 13.9 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4537) Ribosomal_S17_N PF16205.5 gi|212223221|ref|YP_002306457.1| - 0.094 13.1 0.1 0.21 12.0 0.0 1.7 2 0 0 2 2 2 0 Ribosomal_S17 N-terminal Ribosomal_L14 PF00238.19 gi|212223222|ref|YP_002306458.1| - 8.7e-35 119.5 0.8 1.1e-34 119.2 0.8 1.0 1 0 0 1 1 1 1 Ribosomal protein L14p/L23e DUF5335 PF17269.2 gi|212223222|ref|YP_002306458.1| - 0.029 14.2 0.0 0.042 13.7 0.0 1.2 1 0 0 1 1 1 0 Family of unknown function (DUF5335) Ribosomal_L26 PF16906.5 gi|212223223|ref|YP_002306459.1| - 1.5e-37 127.9 0.8 1.9e-37 127.6 0.8 1.1 1 0 0 1 1 1 1 Ribosomal proteins L26 eukaryotic, L24P archaeal KOW PF00467.29 gi|212223223|ref|YP_002306459.1| - 3.4e-10 39.5 2.3 3.4e-10 39.5 2.3 1.8 2 0 0 2 2 2 1 KOW motif hSH3 PF14603.6 gi|212223223|ref|YP_002306459.1| - 0.027 14.9 0.2 0.057 13.8 0.1 1.6 1 1 0 1 1 1 0 Helically-extended SH3 domain Ribosomal_S4e PF00900.20 gi|212223224|ref|YP_002306460.1| - 1.3e-21 76.3 0.1 2.2e-21 75.5 0.1 1.4 1 0 0 1 1 1 1 Ribosomal family S4e RS4NT PF08071.12 gi|212223224|ref|YP_002306460.1| - 1.4e-16 60.3 5.2 2.3e-16 59.6 5.2 1.4 1 0 0 1 1 1 1 RS4NT (NUC023) domain S4 PF01479.25 gi|212223224|ref|YP_002306460.1| - 1.2e-13 50.6 0.1 3e-13 49.3 0.1 1.8 1 0 0 1 1 1 1 S4 domain KOW PF00467.29 gi|212223224|ref|YP_002306460.1| - 0.00096 19.0 1.0 0.0021 18.0 1.0 1.6 1 0 0 1 1 1 1 KOW motif 40S_S4_C PF16121.5 gi|212223224|ref|YP_002306460.1| - 0.025 14.2 0.0 0.072 12.7 0.0 1.8 2 0 0 2 2 2 0 40S ribosomal protein S4 C-terminus DUF4920 PF16267.5 gi|212223224|ref|YP_002306460.1| - 0.053 13.5 0.1 1.7 8.6 0.1 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4920) Ribosomal_L5_C PF00673.21 gi|212223225|ref|YP_002306461.1| - 3e-26 91.4 0.0 6.7e-26 90.3 0.0 1.6 1 0 0 1 1 1 1 ribosomal L5P family C-terminus Ribosomal_L5 PF00281.19 gi|212223225|ref|YP_002306461.1| - 7.1e-20 71.1 0.2 1.3e-19 70.2 0.2 1.5 1 0 0 1 1 1 1 Ribosomal protein L5 Ribosomal_S14 PF00253.21 gi|212223226|ref|YP_002306462.1| - 1.8e-09 37.2 4.9 2e-09 37.1 4.9 1.1 1 0 0 1 1 1 1 Ribosomal protein S14p/S29e Zn_ribbon_SprT PF17283.2 gi|212223226|ref|YP_002306462.1| - 0.042 13.8 3.6 0.06 13.3 3.6 1.3 1 0 0 1 1 1 0 SprT-like zinc ribbon domain zf-FPG_IleRS PF06827.14 gi|212223226|ref|YP_002306462.1| - 0.06 13.2 4.9 0.095 12.6 4.9 1.3 1 0 0 1 1 1 0 Zinc finger found in FPG and IleRS DUF2039 PF10217.9 gi|212223226|ref|YP_002306462.1| - 0.064 13.6 2.1 1.9 8.9 0.0 2.0 1 1 1 2 2 2 0 Uncharacterized conserved protein (DUF2039) Ribosomal_S8 PF00410.19 gi|212223227|ref|YP_002306463.1| - 1.6e-28 99.2 0.0 2.2e-28 98.7 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein S8 Ribosomal_L6 PF00347.23 gi|212223228|ref|YP_002306464.1| - 6e-34 116.6 9.7 1.8e-17 63.8 2.2 2.1 2 0 0 2 2 2 2 Ribosomal protein L6 YbbR PF07949.12 gi|212223228|ref|YP_002306464.1| - 0.33 11.3 5.6 2.8 8.3 0.1 3.1 2 1 0 3 3 3 0 YbbR-like protein Ribosomal_L32e PF01655.18 gi|212223229|ref|YP_002306465.1| - 7.7e-41 138.9 0.3 9.6e-41 138.6 0.3 1.1 1 0 0 1 1 1 1 Ribosomal protein L32 Ribosomal_L19e PF01280.20 gi|212223230|ref|YP_002306466.1| - 7.7e-60 201.1 12.7 8.4e-60 201.0 12.7 1.0 1 0 0 1 1 1 1 Ribosomal protein L19e LpxI_N PF17930.1 gi|212223230|ref|YP_002306466.1| - 0.061 13.2 0.2 0.12 12.3 0.1 1.6 1 1 1 2 2 2 0 LpxI N-terminal domain DUF1707 PF08044.11 gi|212223230|ref|YP_002306466.1| - 0.068 13.3 0.3 1.8 8.7 0.0 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF1707) Ribosomal_L5e PF17144.4 gi|212223231|ref|YP_002306467.1| - 1.3e-26 93.6 0.2 1.3e-14 54.5 0.0 2.7 2 1 1 3 3 3 2 Ribosomal large subunit proteins 60S L5, and 50S L18 Ribosomal_L18_c PF14204.6 gi|212223231|ref|YP_002306467.1| - 6.3e-13 49.5 1.2 1.2e-12 48.6 1.2 1.5 1 0 0 1 1 1 1 Ribosomal L18 C-terminal region Ribosomal_L18p PF00861.22 gi|212223231|ref|YP_002306467.1| - 3.7e-09 37.0 0.0 5.7e-09 36.4 0.0 1.3 1 0 0 1 1 1 1 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast Ribosomal_S5 PF00333.20 gi|212223232|ref|YP_002306468.1| - 7.3e-22 77.1 1.0 1.6e-21 76.0 1.0 1.6 1 0 0 1 1 1 1 Ribosomal protein S5, N-terminal domain Ribosomal_S5_C PF03719.15 gi|212223232|ref|YP_002306468.1| - 4.7e-21 74.0 0.1 1.2e-20 72.7 0.0 1.7 2 0 0 2 2 2 1 Ribosomal protein S5, C-terminal domain Ribosomal_L30 PF00327.20 gi|212223233|ref|YP_002306469.1| - 6.5e-15 54.8 0.7 2e-14 53.2 0.1 2.0 2 0 0 2 2 2 1 Ribosomal protein L30p/L7e Ribosomal_L27A PF00828.19 gi|212223234|ref|YP_002306470.1| - 7e-19 68.8 0.1 1.1e-18 68.1 0.1 1.3 1 0 0 1 1 1 1 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A PCEMA1 PF07418.11 gi|212223234|ref|YP_002306470.1| - 0.019 14.5 0.0 0.023 14.3 0.0 1.1 1 0 0 1 1 1 0 Acidic phosphoprotein precursor PCEMA1 SecY PF00344.20 gi|212223235|ref|YP_002306471.1| - 8.9e-70 235.3 15.3 1.1e-69 235.0 15.3 1.1 1 0 0 1 1 1 1 SecY translocase Plug_translocon PF10559.9 gi|212223235|ref|YP_002306471.1| - 6.4e-12 45.1 0.8 2.6e-11 43.1 0.8 2.2 1 0 0 1 1 1 1 Plug domain of Sec61p AAA_17 PF13207.6 gi|212223236|ref|YP_002306472.1| - 2.1e-37 128.6 0.1 2.9e-37 128.1 0.1 1.2 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|212223236|ref|YP_002306472.1| - 5.4e-10 39.9 0.1 1.3e-09 38.6 0.0 1.6 1 1 1 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|212223236|ref|YP_002306472.1| - 0.00079 19.8 0.2 0.0018 18.7 0.2 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA PF00004.29 gi|212223236|ref|YP_002306472.1| - 0.0014 19.1 0.1 0.003 18.0 0.1 1.9 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.14 gi|212223236|ref|YP_002306472.1| - 0.0019 18.2 1.4 0.11 12.5 0.1 2.5 1 1 2 3 3 3 1 AAA domain (dynein-related subfamily) CLP1_P PF16575.5 gi|212223236|ref|YP_002306472.1| - 0.002 18.0 0.1 0.037 13.8 0.0 2.1 2 0 0 2 2 2 1 mRNA cleavage and polyadenylation factor CLP1 P-loop PAS_9 PF13426.7 gi|212223236|ref|YP_002306472.1| - 0.0061 16.8 0.0 0.011 16.0 0.0 1.5 1 0 0 1 1 1 1 PAS domain APS_kinase PF01583.20 gi|212223236|ref|YP_002306472.1| - 0.0087 16.0 0.6 0.092 12.6 0.1 2.3 2 1 0 2 2 2 1 Adenylylsulphate kinase NTPase_1 PF03266.15 gi|212223236|ref|YP_002306472.1| - 0.011 15.7 0.2 0.031 14.2 0.2 1.8 1 1 0 1 1 1 0 NTPase AAA_28 PF13521.6 gi|212223236|ref|YP_002306472.1| - 0.012 15.8 0.1 0.027 14.7 0.0 1.6 2 0 0 2 2 2 0 AAA domain AAA_33 PF13671.6 gi|212223236|ref|YP_002306472.1| - 0.015 15.4 0.6 0.035 14.3 0.5 1.9 1 1 0 1 1 1 0 AAA domain NB-ARC PF00931.22 gi|212223236|ref|YP_002306472.1| - 0.019 14.1 0.0 0.033 13.4 0.0 1.5 1 0 0 1 1 1 0 NB-ARC domain AAA_22 PF13401.6 gi|212223236|ref|YP_002306472.1| - 0.022 15.0 0.4 0.056 13.7 0.4 1.9 1 1 0 1 1 1 0 AAA domain MeaB PF03308.16 gi|212223236|ref|YP_002306472.1| - 0.025 13.6 0.0 0.066 12.2 0.0 1.7 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_14 PF13173.6 gi|212223236|ref|YP_002306472.1| - 0.028 14.5 0.1 0.06 13.4 0.0 1.8 1 1 1 2 2 2 0 AAA domain MMR_HSR1 PF01926.23 gi|212223236|ref|YP_002306472.1| - 0.04 14.0 1.0 0.15 12.1 0.1 2.2 2 1 0 2 2 2 0 50S ribosome-binding GTPase SRP54 PF00448.22 gi|212223236|ref|YP_002306472.1| - 0.043 13.5 0.0 0.072 12.7 0.0 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain Viral_helicase1 PF01443.18 gi|212223236|ref|YP_002306472.1| - 0.056 13.2 0.0 0.081 12.7 0.0 1.3 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase Zeta_toxin PF06414.12 gi|212223236|ref|YP_002306472.1| - 0.067 12.5 1.6 0.34 10.1 0.1 2.5 2 1 0 2 2 2 0 Zeta toxin KTI12 PF08433.10 gi|212223236|ref|YP_002306472.1| - 0.095 12.1 0.0 0.13 11.7 0.0 1.4 1 0 0 1 1 1 0 Chromatin associated protein KTI12 AAA_30 PF13604.6 gi|212223236|ref|YP_002306472.1| - 1.4 8.6 4.1 1 9.0 0.2 2.2 2 1 0 2 2 2 0 AAA domain EMC3_TMCO1 PF01956.16 gi|212223237|ref|YP_002306473.1| - 1.7e-28 99.5 4.6 2e-28 99.2 4.6 1.0 1 0 0 1 1 1 1 Integral membrane protein EMC3/TMCO1-like 60KD_IMP PF02096.20 gi|212223237|ref|YP_002306473.1| - 1.1e-09 38.4 0.7 1.5e-09 38.0 0.7 1.2 1 0 0 1 1 1 1 60Kd inner membrane protein Inj_translocase PF16928.5 gi|212223237|ref|YP_002306473.1| - 0.0058 16.1 0.8 0.0074 15.8 0.8 1.1 1 0 0 1 1 1 1 DNA/protein translocase of phage P22 injectosome DUF2208 PF09973.9 gi|212223237|ref|YP_002306473.1| - 0.008 15.8 1.1 0.014 15.1 1.1 1.4 1 0 0 1 1 1 1 Predicted membrane protein (DUF2208) OmpH PF03938.14 gi|212223237|ref|YP_002306473.1| - 0.024 15.0 11.1 0.033 14.5 11.1 1.1 1 0 0 1 1 1 0 Outer membrane protein (OmpH-like) DUF2627 PF11118.8 gi|212223237|ref|YP_002306473.1| - 1 10.0 7.4 2.8 8.6 0.1 3.2 2 1 1 3 3 3 0 Protein of unknown function (DUF2627) Ribosomal_L34e PF01199.18 gi|212223238|ref|YP_002306474.1| - 2.9e-25 88.4 3.3 3.2e-25 88.3 3.3 1.0 1 0 0 1 1 1 1 Ribosomal protein L34e DZR PF12773.7 gi|212223238|ref|YP_002306474.1| - 0.00056 19.9 0.3 0.00077 19.4 0.3 1.2 1 0 0 1 1 1 1 Double zinc ribbon Sgf11 PF08209.11 gi|212223238|ref|YP_002306474.1| - 0.024 14.2 1.6 2.6 7.7 0.1 2.3 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) Ima1_N PF09779.9 gi|212223238|ref|YP_002306474.1| - 0.084 13.7 0.5 0.12 13.3 0.1 1.4 1 1 0 1 1 1 0 Ima1 N-terminal domain Cytidylate_kin2 PF13189.6 gi|212223239|ref|YP_002306475.1| - 5.7e-26 91.7 0.8 4.4e-24 85.6 0.8 2.0 1 1 0 1 1 1 1 Cytidylate kinase-like family AAA_18 PF13238.6 gi|212223239|ref|YP_002306475.1| - 2.7e-15 57.1 0.1 3.5e-15 56.7 0.1 1.2 1 0 0 1 1 1 1 AAA domain Cytidylate_kin PF02224.18 gi|212223239|ref|YP_002306475.1| - 8.7e-15 55.0 2.5 2.5e-08 33.9 0.6 2.1 1 1 1 2 2 2 2 Cytidylate kinase AAA_17 PF13207.6 gi|212223239|ref|YP_002306475.1| - 9.5e-14 52.0 0.0 1.3e-13 51.5 0.0 1.3 1 1 0 1 1 1 1 AAA domain ADK PF00406.22 gi|212223239|ref|YP_002306475.1| - 0.00011 22.3 0.0 0.00016 21.8 0.0 1.3 1 0 0 1 1 1 1 Adenylate kinase AAA_33 PF13671.6 gi|212223239|ref|YP_002306475.1| - 0.00058 20.0 0.1 0.0013 18.9 0.1 1.5 1 1 0 1 1 1 1 AAA domain dNK PF01712.19 gi|212223239|ref|YP_002306475.1| - 0.0057 16.5 0.3 0.076 12.9 0.2 2.4 1 1 1 2 2 2 1 Deoxynucleoside kinase CoaE PF01121.20 gi|212223239|ref|YP_002306475.1| - 0.0059 16.3 0.2 0.56 9.9 0.0 2.2 1 1 1 2 2 2 1 Dephospho-CoA kinase AAA_28 PF13521.6 gi|212223239|ref|YP_002306475.1| - 0.0065 16.7 0.3 0.01 16.1 0.0 1.5 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.6 gi|212223239|ref|YP_002306475.1| - 0.012 15.8 0.0 0.016 15.4 0.0 1.2 1 0 0 1 1 1 0 AAA domain NB-ARC PF00931.22 gi|212223239|ref|YP_002306475.1| - 0.02 14.1 0.0 0.026 13.7 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain SinI PF08671.10 gi|212223239|ref|YP_002306475.1| - 0.041 13.7 0.3 0.68 9.8 0.1 2.5 2 0 0 2 2 2 0 Anti-repressor SinI AAA_16 PF13191.6 gi|212223239|ref|YP_002306475.1| - 0.15 12.4 0.0 0.2 12.0 0.0 1.3 1 0 0 1 1 1 0 AAA ATPase domain PRK PF00485.18 gi|212223239|ref|YP_002306475.1| - 0.16 11.7 0.1 0.4 10.4 0.0 1.7 1 1 1 2 2 2 0 Phosphoribulokinase / Uridine kinase family Ribosomal_L14e PF01929.17 gi|212223240|ref|YP_002306476.1| - 9.1e-05 22.9 0.0 0.00013 22.4 0.0 1.3 1 0 0 1 1 1 1 Ribosomal protein L14 KOW PF00467.29 gi|212223240|ref|YP_002306476.1| - 0.0009 19.1 5.6 0.0018 18.2 5.6 1.5 1 0 0 1 1 1 1 KOW motif adh_short PF00106.25 gi|212223241|ref|YP_002306477.1| - 1.2e-35 122.8 0.0 1.5e-35 122.5 0.0 1.0 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 gi|212223241|ref|YP_002306477.1| - 7.3e-20 71.5 0.0 8.7e-20 71.3 0.0 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase Epimerase PF01370.21 gi|212223241|ref|YP_002306477.1| - 7.3e-08 32.2 0.1 1.5e-06 27.9 0.1 2.2 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family NAD_binding_10 PF13460.6 gi|212223241|ref|YP_002306477.1| - 1.6e-07 31.4 0.0 2.9e-07 30.5 0.0 1.4 1 0 0 1 1 1 1 NAD(P)H-binding GDP_Man_Dehyd PF16363.5 gi|212223241|ref|YP_002306477.1| - 7.3e-06 25.6 0.2 0.00014 21.4 0.0 2.2 2 1 0 2 2 2 1 GDP-mannose 4,6 dehydratase KR PF08659.10 gi|212223241|ref|YP_002306477.1| - 2.3e-05 24.4 0.0 2.9e-05 24.1 0.0 1.2 1 0 0 1 1 1 1 KR domain ADH_zinc_N PF00107.26 gi|212223241|ref|YP_002306477.1| - 0.0001 22.3 0.0 0.00018 21.5 0.0 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase TrkA_N PF02254.18 gi|212223241|ref|YP_002306477.1| - 0.00016 21.9 0.4 0.00041 20.6 0.1 1.9 2 0 0 2 2 2 1 TrkA-N domain NmrA PF05368.13 gi|212223241|ref|YP_002306477.1| - 0.00022 20.8 0.1 0.00069 19.2 0.0 1.8 2 0 0 2 2 2 1 NmrA-like family 3Beta_HSD PF01073.19 gi|212223241|ref|YP_002306477.1| - 0.004 16.2 0.1 0.0055 15.8 0.1 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.17 gi|212223241|ref|YP_002306477.1| - 0.0067 15.6 0.0 0.015 14.4 0.0 1.6 1 1 0 1 1 1 1 RmlD substrate binding domain NAD_binding_4 PF07993.12 gi|212223241|ref|YP_002306477.1| - 0.009 15.2 0.3 0.019 14.2 0.3 1.7 1 1 0 1 1 1 1 Male sterility protein Polysacc_synt_2 PF02719.15 gi|212223241|ref|YP_002306477.1| - 0.034 13.3 0.0 0.051 12.7 0.0 1.6 1 1 0 1 1 1 0 Polysaccharide biosynthesis protein F420_oxidored PF03807.17 gi|212223241|ref|YP_002306477.1| - 0.1 13.2 0.0 0.25 12.0 0.0 1.7 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent TruB_N PF01509.18 gi|212223242|ref|YP_002306478.1| - 5.4e-26 91.7 1.0 1e-15 58.4 0.0 3.5 2 1 1 3 3 3 2 TruB family pseudouridylate synthase (N terminal domain) TruB_C_2 PF16198.5 gi|212223242|ref|YP_002306478.1| - 5.4e-24 84.1 0.0 1.2e-23 83.0 0.0 1.6 1 0 0 1 1 1 1 tRNA pseudouridylate synthase B C-terminal domain PUA PF01472.20 gi|212223242|ref|YP_002306478.1| - 5.4e-21 74.3 1.1 1.1e-20 73.3 1.1 1.6 1 0 0 1 1 1 1 PUA domain DKCLD PF08068.12 gi|212223242|ref|YP_002306478.1| - 1.1e-16 60.6 0.0 2.5e-16 59.5 0.0 1.6 1 0 0 1 1 1 1 DKCLD (NUC011) domain UPF0113 PF03657.13 gi|212223242|ref|YP_002306478.1| - 4.1e-05 23.8 0.2 0.00013 22.1 0.1 1.9 2 0 0 2 2 2 1 UPF0113 PUA domain DUF1935 PF09149.10 gi|212223243|ref|YP_002306479.1| - 0.046 14.1 0.8 0.088 13.2 0.5 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF1935) Phage_holin_8 PF16931.5 gi|212223244|ref|YP_002306480.1| - 0.92 9.5 7.4 0.5 10.4 0.3 3.0 2 1 1 3 3 3 0 Putative phage holin Virul_fac_BrkB PF03631.15 gi|212223245|ref|YP_002306481.1| - 0.15 11.6 1.9 5.5 6.5 0.1 2.0 2 0 0 2 2 2 0 Virulence factor BrkB Form-deh_trans PF09163.11 gi|212223246|ref|YP_002306482.1| - 0.018 14.8 1.0 0.083 12.7 0.1 2.3 1 1 1 2 2 2 0 Formate dehydrogenase N, transmembrane DUF2637 PF10935.8 gi|212223246|ref|YP_002306482.1| - 0.065 13.1 0.1 0.086 12.7 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2637) Sensor PF13796.6 gi|212223246|ref|YP_002306482.1| - 1.4 9.0 12.2 5.9 6.9 5.6 2.0 1 1 1 2 2 2 0 Putative sensor S_4TM PF18159.1 gi|212223246|ref|YP_002306482.1| - 6.9 5.9 7.8 0.9 8.8 0.3 2.0 1 1 1 2 2 2 0 SMODS-associating 4TM effector domain MTS PF05175.14 gi|212223247|ref|YP_002306483.1| - 4.3e-44 150.0 0.0 5e-44 149.8 0.0 1.0 1 0 0 1 1 1 1 Methyltransferase small domain PrmA PF06325.13 gi|212223247|ref|YP_002306483.1| - 4.3e-11 42.7 0.0 6.2e-11 42.2 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_31 PF13847.6 gi|212223247|ref|YP_002306483.1| - 8.3e-10 38.7 0.0 1.1e-09 38.3 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|212223247|ref|YP_002306483.1| - 5.1e-09 36.7 0.0 8.6e-09 36.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.15 gi|212223247|ref|YP_002306483.1| - 1.7e-07 31.1 0.0 2.1e-07 30.7 0.0 1.2 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_12 PF08242.12 gi|212223247|ref|YP_002306483.1| - 1.4e-06 28.9 0.0 2.4e-06 28.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.7 gi|212223247|ref|YP_002306483.1| - 3.6e-06 27.0 0.0 5.1e-06 26.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|212223247|ref|YP_002306483.1| - 4.2e-06 26.7 0.0 5.6e-06 26.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|212223247|ref|YP_002306483.1| - 4.7e-06 27.2 0.0 8.9e-06 26.3 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_16 PF10294.9 gi|212223247|ref|YP_002306483.1| - 1.9e-05 24.5 0.0 2.9e-05 23.9 0.0 1.2 1 0 0 1 1 1 1 Lysine methyltransferase tRNA_U5-meth_tr PF05958.11 gi|212223247|ref|YP_002306483.1| - 2.7e-05 23.3 0.0 3.8e-05 22.8 0.0 1.1 1 0 0 1 1 1 1 tRNA (Uracil-5-)-methyltransferase CMAS PF02353.20 gi|212223247|ref|YP_002306483.1| - 0.0042 16.4 0.0 0.0054 16.1 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase PCMT PF01135.19 gi|212223247|ref|YP_002306483.1| - 0.0053 16.5 0.1 0.009 15.8 0.1 1.5 1 1 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) TehB PF03848.14 gi|212223247|ref|YP_002306483.1| - 0.0073 15.7 0.0 0.0099 15.3 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB UPF0020 PF01170.18 gi|212223247|ref|YP_002306483.1| - 0.013 15.2 0.0 0.018 14.7 0.0 1.4 1 0 0 1 1 1 0 Putative RNA methylase family UPF0020 AviRa PF11599.8 gi|212223247|ref|YP_002306483.1| - 0.017 14.6 0.0 0.023 14.1 0.0 1.2 1 0 0 1 1 1 0 RRNA methyltransferase AviRa N6_Mtase PF02384.16 gi|212223247|ref|YP_002306483.1| - 0.028 13.7 0.0 0.037 13.3 0.0 1.2 1 0 0 1 1 1 0 N-6 DNA Methylase Methyltransf_15 PF09445.10 gi|212223247|ref|YP_002306483.1| - 0.075 12.6 0.0 0.11 12.1 0.0 1.2 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase TRM PF02005.16 gi|212223247|ref|YP_002306483.1| - 0.089 11.9 0.0 0.12 11.5 0.0 1.2 1 0 0 1 1 1 0 N2,N2-dimethylguanosine tRNA methyltransferase Methyltransf_10 PF05971.12 gi|212223247|ref|YP_002306483.1| - 0.15 11.4 0.0 0.23 10.8 0.0 1.3 1 1 0 1 1 1 0 RNA methyltransferase NodS PF05401.11 gi|212223247|ref|YP_002306483.1| - 0.15 11.6 0.0 0.21 11.2 0.0 1.2 1 0 0 1 1 1 0 Nodulation protein S (NodS) Ribosomal_S13 PF00416.22 gi|212223248|ref|YP_002306484.1| - 1.1e-41 142.2 0.1 1.3e-41 142.0 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein S13/S18 S4 PF01479.25 gi|212223249|ref|YP_002306485.1| - 4.6e-17 61.5 0.2 4.6e-17 61.5 0.2 2.1 2 0 0 2 2 2 1 S4 domain PEARLI-4 PF05278.12 gi|212223249|ref|YP_002306485.1| - 0.063 12.9 3.0 0.093 12.3 3.0 1.2 1 0 0 1 1 1 0 Arabidopsis phospholipase-like protein (PEARLI 4) Ribosomal_S11 PF00411.19 gi|212223250|ref|YP_002306486.1| - 1.2e-47 160.9 1.2 1.7e-47 160.4 1.2 1.2 1 0 0 1 1 1 1 Ribosomal protein S11 CBM_25 PF03423.13 gi|212223250|ref|YP_002306486.1| - 0.033 14.5 0.0 0.062 13.6 0.0 1.4 1 0 0 1 1 1 0 Carbohydrate binding domain (family 25) RNA_pol_A_bac PF01000.26 gi|212223251|ref|YP_002306487.1| - 4.2e-28 97.9 0.0 9.9e-28 96.8 0.0 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb3/RpoA insert domain RNA_pol_L PF01193.24 gi|212223251|ref|YP_002306487.1| - 3.4e-18 64.8 0.0 4.8e-18 64.4 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain Ribosomal_L18 PF17135.4 gi|212223252|ref|YP_002306488.1| - 3.4e-16 59.2 0.0 3.9e-16 59.0 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein 60S L18 and 50S L18e Ribosomal_L27A PF00828.19 gi|212223252|ref|YP_002306488.1| - 2e-08 35.0 1.8 4.2e-08 33.9 1.8 1.7 1 1 0 1 1 1 1 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A Ribosomal_L13 PF00572.18 gi|212223253|ref|YP_002306489.1| - 1.1e-13 51.5 0.3 1.9e-11 44.3 0.3 2.2 1 1 0 1 1 1 1 Ribosomal protein L13 RHH_8 PF17723.1 gi|212223253|ref|YP_002306489.1| - 0.054 13.7 0.0 0.091 12.9 0.0 1.3 1 0 0 1 1 1 0 Ribbon-Helix-Helix transcriptional regulator family Ribosomal_S9 PF00380.19 gi|212223254|ref|YP_002306490.1| - 1.1e-30 106.6 0.8 1.3e-30 106.5 0.8 1.0 1 0 0 1 1 1 1 Ribosomal protein S9/S16 RNA_pol_N PF01194.17 gi|212223255|ref|YP_002306491.1| - 2.9e-31 107.5 0.3 3.2e-31 107.4 0.3 1.0 1 0 0 1 1 1 1 RNA polymerases N / 8 kDa subunit Chordopox_RPO7 PF05864.12 gi|212223255|ref|YP_002306491.1| - 0.0018 18.5 0.3 0.0023 18.1 0.3 1.2 1 0 0 1 1 1 1 Chordopoxvirus DNA-directed RNA polymerase 7 kDa polypeptide (RPO7) RNA_pol_Rpb6 PF01192.22 gi|212223256|ref|YP_002306492.1| - 9.7e-11 41.4 0.0 1.2e-10 41.2 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb6 Enolase_N PF03952.16 gi|212223257|ref|YP_002306493.1| - 3.1e-24 85.6 0.1 9.6e-23 80.8 0.1 2.3 1 1 0 1 1 1 1 Enolase, N-terminal domain Enolase_C PF00113.22 gi|212223257|ref|YP_002306493.1| - 2.5e-09 36.8 0.1 1.5e-08 34.3 0.0 2.1 2 1 0 2 2 2 1 Enolase, C-terminal TIM barrel domain Ribosomal_S2 PF00318.20 gi|212223258|ref|YP_002306494.1| - 1.9e-26 92.6 0.1 2.6e-13 49.7 0.2 2.1 1 1 1 2 2 2 2 Ribosomal protein S2 DNA_RNApol_7kD PF03604.13 gi|212223259|ref|YP_002306495.1| - 0.00011 21.7 4.9 0.00018 21.1 4.9 1.3 1 0 0 1 1 1 1 DNA directed RNA polymerase, 7 kDa subunit zinc_ribbon_2 PF13240.6 gi|212223259|ref|YP_002306495.1| - 0.00019 21.0 2.8 0.00027 20.5 2.8 1.2 1 0 0 1 1 1 1 zinc-ribbon domain Ribosomal_L40e PF01020.17 gi|212223259|ref|YP_002306495.1| - 0.0006 19.7 5.5 0.00071 19.4 5.5 1.2 1 0 0 1 1 1 1 Ribosomal L40e family DZR PF12773.7 gi|212223259|ref|YP_002306495.1| - 0.0007 19.6 0.5 0.00073 19.5 0.5 1.2 1 0 0 1 1 1 1 Double zinc ribbon Rubredoxin_2 PF18073.1 gi|212223259|ref|YP_002306495.1| - 0.0091 15.7 1.0 3.3 7.5 0.1 2.1 2 0 0 2 2 2 2 Rubredoxin metal binding domain Toxin_5 PF05294.13 gi|212223259|ref|YP_002306495.1| - 0.016 15.6 2.7 0.022 15.2 2.7 1.3 1 0 0 1 1 1 0 Scorpion short toxin UPF0547 PF10571.9 gi|212223259|ref|YP_002306495.1| - 0.017 15.2 0.6 0.026 14.6 0.6 1.3 1 0 0 1 1 1 0 Uncharacterised protein family UPF0547 zf-ribbon_3 PF13248.6 gi|212223259|ref|YP_002306495.1| - 0.028 13.8 2.8 0.041 13.3 2.8 1.3 1 0 0 1 1 1 0 zinc-ribbon domain zinc_ribbon_10 PF10058.9 gi|212223259|ref|YP_002306495.1| - 0.053 13.3 2.0 0.14 11.9 0.1 2.0 2 0 0 2 2 2 0 Predicted integral membrane zinc-ribbon metal-binding protein HypA PF01155.19 gi|212223259|ref|YP_002306495.1| - 0.18 11.9 0.7 0.2 11.7 0.7 1.1 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA RNA_POL_M_15KD PF02150.16 gi|212223259|ref|YP_002306495.1| - 0.57 10.1 4.3 1.2 9.1 1.0 2.1 1 1 1 2 2 2 0 RNA polymerases M/15 Kd subunit PadR PF03551.14 gi|212223260|ref|YP_002306496.1| - 6e-19 67.8 0.6 7.6e-19 67.5 0.6 1.1 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family RTP PF02334.16 gi|212223260|ref|YP_002306496.1| - 6.4e-05 23.6 0.7 7.4e-05 23.4 0.7 1.2 1 0 0 1 1 1 1 Replication terminator protein HTH_34 PF13601.6 gi|212223260|ref|YP_002306496.1| - 0.00019 21.5 0.0 0.00026 21.1 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_27 PF13463.6 gi|212223260|ref|YP_002306496.1| - 0.00032 21.1 0.0 0.00045 20.7 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain Mrr_N PF14338.6 gi|212223260|ref|YP_002306496.1| - 0.002 18.2 0.0 0.41 10.8 0.0 2.2 1 1 0 1 1 1 1 Mrr N-terminal domain DUF3116 PF11313.8 gi|212223260|ref|YP_002306496.1| - 0.0052 16.6 1.3 0.0086 15.9 1.3 1.5 1 1 0 1 1 1 1 Protein of unknown function (DUF3116) Replic_Relax PF13814.6 gi|212223260|ref|YP_002306496.1| - 0.0093 16.0 0.0 0.011 15.8 0.0 1.1 1 0 0 1 1 1 1 Replication-relaxation DUF505 PF04458.12 gi|212223260|ref|YP_002306496.1| - 0.0099 14.3 0.7 0.011 14.1 0.7 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF505) Fe_dep_repress PF01325.19 gi|212223260|ref|YP_002306496.1| - 0.015 15.5 0.7 0.022 14.9 0.0 1.7 2 0 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain HTH_5 PF01022.20 gi|212223260|ref|YP_002306496.1| - 0.03 14.2 0.0 0.19 11.6 0.0 2.2 1 1 0 1 1 1 0 Bacterial regulatory protein, arsR family DUF2513 PF10711.9 gi|212223260|ref|YP_002306496.1| - 0.065 13.5 0.0 0.083 13.2 0.0 1.3 1 0 0 1 1 1 0 Hypothetical protein (DUF2513) FUN14 PF04930.15 gi|212223261|ref|YP_002306497.1| - 1.2e-12 48.0 9.0 2.2e-12 47.2 9.0 1.4 1 1 0 1 1 1 1 FUN14 family SPC12 PF06645.13 gi|212223261|ref|YP_002306497.1| - 1.8 8.7 5.5 1.8 8.7 1.4 2.1 2 0 0 2 2 2 0 Microsomal signal peptidase 12 kDa subunit (SPC12) MatE PF01554.18 gi|212223262|ref|YP_002306498.1| - 3.6e-06 26.7 28.3 0.00022 20.9 10.3 4.3 2 2 1 3 3 3 2 MatE Polysacc_synt_C PF14667.6 gi|212223262|ref|YP_002306498.1| - 0.009 16.1 18.2 0.009 16.1 18.2 4.2 2 1 2 4 4 4 1 Polysaccharide biosynthesis C-terminal domain Metallophos_2 PF12850.7 gi|212223263|ref|YP_002306499.1| - 0.0046 17.2 0.0 2.6 8.2 0.0 2.2 2 0 0 2 2 2 2 Calcineurin-like phosphoesterase superfamily domain HTH_24 PF13412.6 gi|212223264|ref|YP_002306500.1| - 1.7e-18 65.9 1.4 2.9e-18 65.1 1.4 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|212223264|ref|YP_002306500.1| - 5.5e-16 58.1 0.7 9.5e-16 57.4 0.7 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain AsnC_trans_reg PF01037.21 gi|212223264|ref|YP_002306500.1| - 1.4e-15 57.0 0.1 2.1e-15 56.4 0.1 1.3 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain HTH_23 PF13384.6 gi|212223264|ref|YP_002306500.1| - 1.9e-08 33.8 0.2 4e-08 32.8 0.2 1.5 1 0 0 1 1 1 1 Homeodomain-like domain HTH_28 PF13518.6 gi|212223264|ref|YP_002306500.1| - 2.9e-07 30.5 0.1 7e-07 29.3 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_20 PF12840.7 gi|212223264|ref|YP_002306500.1| - 1.4e-06 28.2 0.0 2.4e-06 27.5 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|212223264|ref|YP_002306500.1| - 3.5e-06 26.8 0.1 6e-06 26.0 0.1 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family Sigma70_r4_2 PF08281.12 gi|212223264|ref|YP_002306500.1| - 4.5e-06 26.2 0.1 1e-05 25.1 0.1 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_11 PF08279.12 gi|212223264|ref|YP_002306500.1| - 5.5e-06 26.2 0.2 1e-05 25.3 0.2 1.4 1 0 0 1 1 1 1 HTH domain MarR PF01047.22 gi|212223264|ref|YP_002306500.1| - 2.5e-05 24.1 1.1 3.4e-05 23.7 0.1 1.6 2 0 0 2 2 1 1 MarR family MarR_2 PF12802.7 gi|212223264|ref|YP_002306500.1| - 0.00021 21.1 0.0 0.0003 20.6 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_38 PF13936.6 gi|212223264|ref|YP_002306500.1| - 0.00047 19.8 0.9 0.00047 19.8 0.9 1.6 2 0 0 2 2 1 1 Helix-turn-helix domain HTH_29 PF13551.6 gi|212223264|ref|YP_002306500.1| - 0.0005 20.0 0.0 0.00097 19.1 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn helix HTH_IclR PF09339.10 gi|212223264|ref|YP_002306500.1| - 0.00063 19.5 0.1 0.0014 18.4 0.0 1.6 2 0 0 2 2 1 1 IclR helix-turn-helix domain TrmB PF01978.19 gi|212223264|ref|YP_002306500.1| - 0.0013 18.6 0.1 0.0031 17.4 0.1 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_Crp_2 PF13545.6 gi|212223264|ref|YP_002306500.1| - 0.0013 18.7 0.1 0.0062 16.5 0.1 2.0 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain HTH_30 PF13556.6 gi|212223264|ref|YP_002306500.1| - 0.0083 15.9 0.1 0.015 15.1 0.1 1.4 1 0 0 1 1 1 1 PucR C-terminal helix-turn-helix domain GYD PF08734.11 gi|212223264|ref|YP_002306500.1| - 0.014 15.3 0.1 0.022 14.7 0.1 1.3 1 0 0 1 1 1 0 GYD domain HTH_41 PF14502.6 gi|212223264|ref|YP_002306500.1| - 0.017 14.8 0.1 0.1 12.3 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain FUR PF01475.19 gi|212223264|ref|YP_002306500.1| - 0.029 14.5 0.2 0.058 13.6 0.0 1.6 2 0 0 2 2 1 0 Ferric uptake regulator family HTH_DeoR PF08220.12 gi|212223264|ref|YP_002306500.1| - 0.031 14.0 0.1 0.065 13.0 0.1 1.4 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain HTH_34 PF13601.6 gi|212223264|ref|YP_002306500.1| - 0.033 14.4 0.1 0.069 13.3 0.1 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain PadR PF03551.14 gi|212223264|ref|YP_002306500.1| - 0.037 14.0 0.0 0.077 13.0 0.0 1.6 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family Fe_dep_repress PF01325.19 gi|212223264|ref|YP_002306500.1| - 0.037 14.2 0.0 0.08 13.1 0.0 1.5 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain TetR_N PF00440.23 gi|212223264|ref|YP_002306500.1| - 0.042 13.7 0.0 0.088 12.6 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, tetR family Trp_repressor PF01371.19 gi|212223264|ref|YP_002306500.1| - 0.042 14.0 0.4 0.74 10.0 0.1 2.2 2 0 0 2 2 2 0 Trp repressor protein HTH_32 PF13565.6 gi|212223264|ref|YP_002306500.1| - 0.049 14.2 0.4 0.39 11.4 0.3 2.2 1 1 1 2 2 2 0 Homeodomain-like domain Mga PF05043.13 gi|212223264|ref|YP_002306500.1| - 0.078 13.6 0.1 0.25 12.0 0.0 1.8 2 0 0 2 2 2 0 Mga helix-turn-helix domain HTH_40 PF14493.6 gi|212223264|ref|YP_002306500.1| - 0.11 13.0 0.3 0.2 12.1 0.2 1.5 1 1 0 1 1 1 0 Helix-turn-helix domain Terminase_5 PF06056.12 gi|212223264|ref|YP_002306500.1| - 0.11 12.4 0.5 0.32 10.9 0.1 1.9 2 0 0 2 2 2 0 Putative ATPase subunit of terminase (gpP-like) HTH_Tnp_ISL3 PF13542.6 gi|212223264|ref|YP_002306500.1| - 0.11 11.9 0.0 0.2 11.1 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 HTH_39 PF14090.6 gi|212223264|ref|YP_002306500.1| - 0.11 12.2 0.3 0.26 11.1 0.3 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_7 PF02796.15 gi|212223264|ref|YP_002306500.1| - 0.12 12.4 0.3 0.69 10.0 0.2 2.3 1 1 1 2 2 2 0 Helix-turn-helix domain of resolvase HTH_12 PF08461.10 gi|212223264|ref|YP_002306500.1| - 0.56 10.2 4.0 0.55 10.2 0.7 2.5 3 1 0 3 3 3 0 Ribonuclease R winged-helix domain Pribosyltran PF00156.27 gi|212223266|ref|YP_002306502.1| - 9.2e-12 44.8 0.2 1.4e-11 44.2 0.2 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase domain HTH_3 PF01381.22 gi|212223266|ref|YP_002306502.1| - 2.1e-06 27.7 0.1 6.4e-06 26.1 0.1 1.8 1 0 0 1 1 1 1 Helix-turn-helix HTH_24 PF13412.6 gi|212223266|ref|YP_002306502.1| - 0.088 12.4 0.1 0.33 10.6 0.1 2.0 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_WhiA PF02650.14 gi|212223266|ref|YP_002306502.1| - 0.11 12.8 0.4 0.54 10.6 0.2 2.0 2 0 0 2 2 2 0 WhiA C-terminal HTH domain Trp_repressor PF01371.19 gi|212223266|ref|YP_002306502.1| - 0.14 12.3 0.2 0.58 10.3 0.1 2.0 1 1 0 2 2 2 0 Trp repressor protein CxxCxxCC PF03692.15 gi|212223267|ref|YP_002306503.1| - 1.9e-18 66.9 1.2 2.5e-18 66.5 1.2 1.2 1 0 0 1 1 1 1 Putative zinc- or iron-chelating domain SapC PF07277.11 gi|212223267|ref|YP_002306503.1| - 0.024 14.2 0.0 0.031 13.9 0.0 1.1 1 0 0 1 1 1 0 SapC DUF3109 PF11307.8 gi|212223267|ref|YP_002306503.1| - 0.069 13.0 5.7 3.2 7.5 5.7 2.2 1 1 0 1 1 1 0 Protein of unknown function (DUF3109) AsnC_trans_reg PF01037.21 gi|212223268|ref|YP_002306504.1| - 2e-16 59.7 0.2 2.3e-16 59.5 0.2 1.0 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain RecO_N_2 PF13114.6 gi|212223268|ref|YP_002306504.1| - 0.083 12.6 0.1 0.096 12.4 0.1 1.4 1 1 0 1 1 1 0 RecO N terminal SRP54 PF00448.22 gi|212223269|ref|YP_002306505.1| - 1.8e-77 259.4 0.0 3.2e-77 258.6 0.0 1.4 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP_SPB PF02978.19 gi|212223269|ref|YP_002306505.1| - 4.7e-35 120.2 1.9 4.7e-35 120.2 1.9 2.3 3 0 0 3 3 1 1 Signal peptide binding domain SRP54_N PF02881.19 gi|212223269|ref|YP_002306505.1| - 8.7e-21 73.9 7.5 9.1e-21 73.9 2.6 2.8 2 0 0 2 2 2 1 SRP54-type protein, helical bundle domain CbiA PF01656.23 gi|212223269|ref|YP_002306505.1| - 6.5e-06 26.2 0.0 2.6e-05 24.3 0.0 2.0 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain MobB PF03205.14 gi|212223269|ref|YP_002306505.1| - 0.00011 22.2 0.4 0.00054 19.9 0.1 2.2 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B Zeta_toxin PF06414.12 gi|212223269|ref|YP_002306505.1| - 0.00017 20.9 0.0 0.00067 19.0 0.0 1.9 1 1 0 1 1 1 1 Zeta toxin AAA_22 PF13401.6 gi|212223269|ref|YP_002306505.1| - 0.00042 20.6 0.3 0.003 17.8 0.0 2.5 2 0 0 2 2 2 1 AAA domain cobW PF02492.19 gi|212223269|ref|YP_002306505.1| - 0.00042 19.9 1.1 0.044 13.4 1.1 2.4 1 1 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain AAA_30 PF13604.6 gi|212223269|ref|YP_002306505.1| - 0.00044 20.0 0.2 0.0042 16.8 0.0 2.4 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|212223269|ref|YP_002306505.1| - 0.00061 20.2 0.0 0.0022 18.4 0.0 1.9 1 1 0 1 1 1 1 AAA ATPase domain AAA_17 PF13207.6 gi|212223269|ref|YP_002306505.1| - 0.00094 19.6 1.1 0.0036 17.7 0.2 2.5 2 0 0 2 2 2 1 AAA domain Glyco_transf_4 PF13439.6 gi|212223269|ref|YP_002306505.1| - 0.0016 18.4 0.0 0.021 14.8 0.0 2.2 2 0 0 2 2 2 1 Glycosyltransferase Family 4 IMPDH PF00478.25 gi|212223269|ref|YP_002306505.1| - 0.0026 16.8 0.4 0.005 15.9 0.4 1.4 1 0 0 1 1 1 1 IMP dehydrogenase / GMP reductase domain MeaB PF03308.16 gi|212223269|ref|YP_002306505.1| - 0.0054 15.7 1.1 0.014 14.4 0.0 2.2 3 0 0 3 3 3 1 Methylmalonyl Co-A mutase-associated GTPase MeaB NTPase_1 PF03266.15 gi|212223269|ref|YP_002306505.1| - 0.0064 16.4 1.5 0.051 13.5 0.1 2.5 2 0 0 2 2 2 1 NTPase RNase_Zc3h12a PF11977.8 gi|212223269|ref|YP_002306505.1| - 0.0072 16.1 0.0 2.8 7.7 0.0 2.7 2 0 0 2 2 2 1 Zc3h12a-like Ribonuclease NYN domain AAA_33 PF13671.6 gi|212223269|ref|YP_002306505.1| - 0.0076 16.4 0.0 0.021 15.0 0.0 1.8 1 0 0 1 1 1 1 AAA domain Fe-ADH PF00465.19 gi|212223269|ref|YP_002306505.1| - 0.013 14.3 0.0 0.028 13.2 0.0 1.5 1 0 0 1 1 1 0 Iron-containing alcohol dehydrogenase AAA_26 PF13500.6 gi|212223269|ref|YP_002306505.1| - 0.016 15.0 1.5 0.59 9.9 1.5 2.4 1 1 0 1 1 1 0 AAA domain KTI12 PF08433.10 gi|212223269|ref|YP_002306505.1| - 0.027 13.9 1.9 0.44 10.0 0.0 2.8 3 0 0 3 3 3 0 Chromatin associated protein KTI12 LpxK PF02606.14 gi|212223269|ref|YP_002306505.1| - 0.031 13.4 0.3 0.16 11.0 0.1 2.1 2 0 0 2 2 2 0 Tetraacyldisaccharide-1-P 4'-kinase Thymidylate_kin PF02223.17 gi|212223269|ref|YP_002306505.1| - 0.032 13.9 0.1 0.032 13.9 0.1 2.6 3 0 0 3 3 3 0 Thymidylate kinase ATP_bind_1 PF03029.17 gi|212223269|ref|YP_002306505.1| - 0.046 13.5 2.4 0.05 13.4 0.1 2.2 3 0 0 3 3 3 0 Conserved hypothetical ATP binding protein APS_kinase PF01583.20 gi|212223269|ref|YP_002306505.1| - 0.059 13.3 0.0 0.16 11.8 0.0 1.7 1 0 0 1 1 1 0 Adenylylsulphate kinase DUF3008 PF11450.8 gi|212223269|ref|YP_002306505.1| - 0.074 13.2 4.7 1.2 9.4 0.5 2.9 2 0 0 2 2 2 0 Protein of unknwon function (DUF3008) AAA_8 PF12780.7 gi|212223269|ref|YP_002306505.1| - 0.096 12.0 0.1 1.1 8.6 0.0 2.4 2 0 0 2 2 2 0 P-loop containing dynein motor region D4 Cys_Met_Meta_PP PF01053.20 gi|212223269|ref|YP_002306505.1| - 0.097 11.2 0.0 0.17 10.4 0.0 1.3 1 0 0 1 1 1 0 Cys/Met metabolism PLP-dependent enzyme AAA_18 PF13238.6 gi|212223269|ref|YP_002306505.1| - 0.1 13.1 0.1 0.9 10.1 0.1 2.6 1 1 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.23 gi|212223269|ref|YP_002306505.1| - 0.1 12.7 2.0 0.28 11.3 0.2 2.7 3 1 0 3 3 2 0 50S ribosome-binding GTPase ResIII PF04851.15 gi|212223269|ref|YP_002306505.1| - 0.12 12.3 0.8 0.63 10.0 0.7 2.2 1 1 0 1 1 1 0 Type III restriction enzyme, res subunit Bromo_TP_like PF17027.5 gi|212223269|ref|YP_002306505.1| - 0.19 11.9 1.7 0.42 10.8 0.3 2.3 2 0 0 2 2 2 0 Histone-fold protein G-alpha PF00503.20 gi|212223269|ref|YP_002306505.1| - 0.4 9.8 2.2 1.4 8.0 0.1 2.5 2 1 0 2 2 2 0 G-protein alpha subunit tRNA_lig_kinase PF08303.11 gi|212223269|ref|YP_002306505.1| - 0.83 9.7 3.9 2.3 8.3 0.0 2.9 4 0 0 4 4 3 0 tRNA ligase kinase domain Adaptin_binding PF10199.9 gi|212223269|ref|YP_002306505.1| - 4.2 8.0 6.6 16 6.1 1.6 2.5 2 1 0 2 2 2 0 Alpha and gamma adaptin binding protein p34 DUF89 PF01937.19 gi|212223271|ref|YP_002306507.1| - 1.5e-48 165.6 0.0 1.7e-48 165.4 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF89 ribosomal_L24 PF17136.4 gi|212223272|ref|YP_002306508.1| - 0.091 13.2 0.1 0.1 13.0 0.1 1.2 1 0 0 1 1 1 0 Ribosomal proteins 50S L24/mitochondrial 39S L24 DUF3692 PF12469.8 gi|212223273|ref|YP_002306509.1| - 0.033 14.4 0.0 0.088 13.0 0.0 1.7 1 0 0 1 1 1 0 CRISPR-associated protein TPR_19 PF14559.6 gi|212223273|ref|YP_002306509.1| - 0.35 11.4 1.4 4.3 7.9 0.1 3.4 3 2 2 5 5 5 0 Tetratricopeptide repeat TPR_8 PF13181.6 gi|212223273|ref|YP_002306509.1| - 7.7 7.0 6.5 4.9 7.6 0.1 4.1 6 0 0 6 6 6 0 Tetratricopeptide repeat PNP_UDP_1 PF01048.20 gi|212223274|ref|YP_002306510.1| - 2e-54 184.3 0.0 2.2e-54 184.2 0.0 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily DUF2732 PF10809.8 gi|212223274|ref|YP_002306510.1| - 0.026 14.4 0.1 0.05 13.5 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2732) Pyr_redox_2 PF07992.14 gi|212223275|ref|YP_002306511.1| - 4.3e-57 193.6 0.0 5.4e-57 193.3 0.0 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|212223275|ref|YP_002306511.1| - 7.8e-19 68.0 0.0 5.3e-16 58.8 0.0 2.1 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|212223275|ref|YP_002306511.1| - 7.7e-18 64.8 3.1 1.2e-16 61.0 0.9 2.5 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.22 gi|212223275|ref|YP_002306511.1| - 6.4e-17 61.8 0.1 1.8e-16 60.4 0.1 1.7 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain FAD_binding_2 PF00890.24 gi|212223275|ref|YP_002306511.1| - 1.3e-07 31.0 0.1 0.0012 18.1 0.1 3.1 3 0 0 3 3 3 2 FAD binding domain K_oxygenase PF13434.6 gi|212223275|ref|YP_002306511.1| - 7.4e-07 28.6 0.0 2.4e-06 27.0 0.0 1.8 2 0 0 2 2 2 1 L-lysine 6-monooxygenase (NADPH-requiring) GIDA PF01134.22 gi|212223275|ref|YP_002306511.1| - 1e-05 24.8 2.4 1.8 7.5 0.0 3.8 3 1 1 4 4 4 3 Glucose inhibited division protein A HI0933_like PF03486.14 gi|212223275|ref|YP_002306511.1| - 7.8e-05 21.6 0.7 0.029 13.1 0.1 2.7 3 0 0 3 3 3 2 HI0933-like protein Trp_halogenase PF04820.14 gi|212223275|ref|YP_002306511.1| - 0.00071 18.5 1.2 0.3 9.9 0.0 2.6 3 0 0 3 3 3 2 Tryptophan halogenase FAD_oxidored PF12831.7 gi|212223275|ref|YP_002306511.1| - 0.0013 18.2 1.0 0.0044 16.4 0.1 2.2 3 0 0 3 3 3 1 FAD dependent oxidoreductase NAD_binding_9 PF13454.6 gi|212223275|ref|YP_002306511.1| - 0.006 16.6 0.3 5.4 7.0 0.0 3.0 2 1 1 3 3 3 2 FAD-NAD(P)-binding NAD_binding_8 PF13450.6 gi|212223275|ref|YP_002306511.1| - 0.0073 16.5 2.5 1.1 9.6 0.0 3.0 3 0 0 3 3 3 1 NAD(P)-binding Rossmann-like domain Thi4 PF01946.17 gi|212223275|ref|YP_002306511.1| - 0.016 14.5 0.1 0.079 12.2 0.0 2.1 2 0 0 2 2 2 0 Thi4 family DAO PF01266.24 gi|212223275|ref|YP_002306511.1| - 0.048 13.2 4.3 16 4.9 0.0 3.9 3 1 1 4 4 4 0 FAD dependent oxidoreductase Lycopene_cycl PF05834.12 gi|212223275|ref|YP_002306511.1| - 0.055 12.5 0.9 2.1 7.3 0.0 2.8 2 1 1 3 3 3 0 Lycopene cyclase protein PNP_UDP_1 PF01048.20 gi|212223277|ref|YP_002306513.1| - 9.9e-45 152.6 0.7 1.2e-44 152.3 0.7 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily Memo PF01875.17 gi|212223278|ref|YP_002306514.1| - 1.4e-72 244.1 0.0 1.6e-72 244.0 0.0 1.0 1 0 0 1 1 1 1 Memo-like protein LigB PF02900.18 gi|212223278|ref|YP_002306514.1| - 3.2e-07 29.7 0.0 4.2e-07 29.3 0.0 1.2 1 0 0 1 1 1 1 Catalytic LigB subunit of aromatic ring-opening dioxygenase GHMP_kinases_N PF00288.26 gi|212223279|ref|YP_002306515.1| - 5.3e-17 61.8 3.4 1.2e-16 60.7 3.4 1.6 1 0 0 1 1 1 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.13 gi|212223279|ref|YP_002306515.1| - 2.6e-13 50.1 0.5 2.6e-13 50.1 0.5 2.4 2 2 0 2 2 2 1 GHMP kinases C terminal GalKase_gal_bdg PF10509.9 gi|212223279|ref|YP_002306515.1| - 0.0018 17.8 0.0 0.0055 16.2 0.0 1.8 1 0 0 1 1 1 1 Galactokinase galactose-binding signature FlgI PF02119.16 gi|212223279|ref|YP_002306515.1| - 0.17 10.8 2.8 5.3 5.9 0.5 2.2 2 0 0 2 2 2 0 Flagellar P-ring protein AA_kinase PF00696.28 gi|212223280|ref|YP_002306516.1| - 3.7e-41 141.3 0.0 4.2e-41 141.1 0.0 1.0 1 0 0 1 1 1 1 Amino acid kinase family FMN_dh PF01070.18 gi|212223281|ref|YP_002306517.1| - 2.1e-27 96.1 0.3 6.4e-16 58.3 0.5 2.1 1 1 0 2 2 2 2 FMN-dependent dehydrogenase IMPDH PF00478.25 gi|212223281|ref|YP_002306517.1| - 1.1e-07 31.2 3.5 0.0013 17.8 2.5 3.6 3 1 0 3 3 3 2 IMP dehydrogenase / GMP reductase domain NMO PF03060.15 gi|212223281|ref|YP_002306517.1| - 0.0004 19.9 2.2 0.00064 19.2 1.1 1.8 2 0 0 2 2 2 1 Nitronate monooxygenase Glu_synthase PF01645.17 gi|212223281|ref|YP_002306517.1| - 0.0066 15.6 0.4 0.059 12.5 0.3 2.2 2 0 0 2 2 2 1 Conserved region in glutamate synthase DUF561 PF04481.12 gi|212223281|ref|YP_002306517.1| - 0.057 12.6 0.0 0.092 11.9 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF561) Lactamase_B PF00753.27 gi|212223282|ref|YP_002306518.1| - 1.7e-15 57.5 0.4 3e-15 56.8 0.1 1.6 2 0 0 2 2 2 1 Metallo-beta-lactamase superfamily RMMBL PF07521.12 gi|212223282|ref|YP_002306518.1| - 1.5e-12 47.3 2.4 6.8e-12 45.2 0.0 3.0 4 0 0 4 4 4 1 Zn-dependent metallo-hydrolase RNA specificity domain Lactamase_B_2 PF12706.7 gi|212223282|ref|YP_002306518.1| - 1.5e-09 37.7 0.0 2.5e-09 36.9 0.0 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain polyprenyl_synt PF00348.17 gi|212223283|ref|YP_002306519.1| - 1.5e-71 240.4 0.0 1.9e-71 240.1 0.0 1.1 1 0 0 1 1 1 1 Polyprenyl synthetase Gp-FAR-1 PF05823.12 gi|212223283|ref|YP_002306519.1| - 0.14 12.5 0.9 5.3 7.4 0.1 3.1 3 0 0 3 3 3 0 Nematode fatty acid retinoid binding protein (Gp-FAR-1) DUF3267 PF11667.8 gi|212223284|ref|YP_002306520.1| - 6.1e-06 26.5 3.6 1e-05 25.7 0.0 2.1 1 1 1 2 2 2 1 Putative zincin peptidase Peptidase_M50 PF02163.22 gi|212223284|ref|YP_002306520.1| - 0.023 14.0 0.3 0.033 13.5 0.3 1.2 1 0 0 1 1 1 0 Peptidase family M50 Methyltransf_25 PF13649.6 gi|212223286|ref|YP_002306522.1| - 1.2e-07 32.4 0.0 2e-07 31.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|212223286|ref|YP_002306522.1| - 5.4e-07 29.6 0.0 9.7e-07 28.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|212223286|ref|YP_002306522.1| - 6e-07 29.0 0.0 1.6e-06 27.7 0.0 1.6 2 0 0 2 2 2 1 ubiE/COQ5 methyltransferase family Methyltransf_11 PF08241.12 gi|212223286|ref|YP_002306522.1| - 1.3e-05 25.8 0.0 2.6e-05 24.8 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.19 gi|212223286|ref|YP_002306522.1| - 7.7e-05 22.5 0.0 0.00029 20.7 0.0 1.8 2 0 0 2 2 2 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) MetW PF07021.12 gi|212223286|ref|YP_002306522.1| - 0.018 14.7 0.0 0.046 13.3 0.0 1.6 1 1 0 1 1 1 0 Methionine biosynthesis protein MetW Methyltransf_12 PF08242.12 gi|212223286|ref|YP_002306522.1| - 0.19 12.5 0.0 0.34 11.7 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain tRNA-synt_1 PF00133.22 gi|212223287|ref|YP_002306523.1| - 1.8e-67 228.0 0.5 4.1e-67 226.8 0.5 1.6 1 1 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.13 gi|212223287|ref|YP_002306523.1| - 1.4e-31 109.6 1.4 2.8e-31 108.5 0.4 2.1 2 0 0 2 2 2 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.11 gi|212223287|ref|YP_002306523.1| - 1.8e-22 79.7 0.2 3.1e-10 39.4 0.0 2.4 2 0 0 2 2 2 2 tRNA synthetases class I (M) tRNA-synt_1_2 PF13603.6 gi|212223287|ref|YP_002306523.1| - 9e-10 38.4 0.7 3.2e-09 36.6 0.0 2.2 2 0 0 2 2 2 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1e PF01406.19 gi|212223287|ref|YP_002306523.1| - 5.6e-09 35.8 1.9 0.00098 18.6 0.0 3.2 3 0 0 3 3 3 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1f PF01921.18 gi|212223287|ref|YP_002306523.1| - 0.00067 18.7 0.1 0.037 12.9 0.0 2.5 3 0 0 3 3 3 1 tRNA synthetases class I (K) tRNA-synt_1d PF00750.19 gi|212223287|ref|YP_002306523.1| - 0.025 13.5 0.0 0.093 11.7 0.0 1.9 2 0 0 2 2 2 0 tRNA synthetases class I (R) RNase_Zc3h12a PF11977.8 gi|212223288|ref|YP_002306524.1| - 1.2e-20 73.9 0.0 3.7e-20 72.3 0.0 1.9 1 0 0 1 1 1 1 Zc3h12a-like Ribonuclease NYN domain PepSY_2 PF13670.6 gi|212223288|ref|YP_002306524.1| - 0.13 12.3 0.3 23 5.1 0.0 2.4 2 0 0 2 2 2 0 Peptidase propeptide and YPEB domain Peptidase_M24 PF00557.24 gi|212223289|ref|YP_002306525.1| - 7.4e-67 225.1 0.1 9.2e-67 224.8 0.1 1.1 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.18 gi|212223289|ref|YP_002306525.1| - 3.2e-16 60.2 0.0 5e-16 59.6 0.0 1.3 1 0 0 1 1 1 1 Creatinase/Prolidase N-terminal domain Ribosomal_L15e PF00827.17 gi|212223290|ref|YP_002306526.1| - 3.9e-90 300.7 8.2 4.4e-90 300.5 8.2 1.0 1 0 0 1 1 1 1 Ribosomal L15 RNA_binding PF01877.17 gi|212223291|ref|YP_002306527.1| - 3e-37 127.5 1.9 3.7e-37 127.2 1.9 1.1 1 0 0 1 1 1 1 RNA binding RNase_P_p30 PF01876.16 gi|212223292|ref|YP_002306528.1| - 3.8e-32 111.5 0.0 4.4e-32 111.3 0.0 1.0 1 0 0 1 1 1 1 RNase P subunit p30 GDPD PF03009.17 gi|212223292|ref|YP_002306528.1| - 0.02 14.6 0.0 0.04 13.6 0.0 1.5 1 1 0 1 1 1 0 Glycerophosphoryl diester phosphodiesterase family Ribosomal_L29 PF00831.23 gi|212223292|ref|YP_002306528.1| - 0.11 12.5 0.2 0.24 11.4 0.2 1.5 1 0 0 1 1 1 0 Ribosomal L29 protein PALP PF00291.25 gi|212223293|ref|YP_002306529.1| - 2.4e-47 161.8 0.1 3e-47 161.5 0.1 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme NAD_Gly3P_dh_N PF01210.23 gi|212223293|ref|YP_002306529.1| - 0.13 12.2 0.1 0.27 11.2 0.1 1.5 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus DUF389 PF04087.14 gi|212223294|ref|YP_002306530.1| - 1.3e-27 96.6 12.9 3e-27 95.4 12.9 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF389) NikR_C PF08753.11 gi|212223296|ref|YP_002306532.1| - 6.5e-34 115.9 5.0 9.7e-34 115.4 5.0 1.3 1 0 0 1 1 1 1 NikR C terminal nickel binding domain RHH_1 PF01402.21 gi|212223296|ref|YP_002306532.1| - 1.9e-08 33.9 0.7 4.7e-08 32.7 0.1 2.0 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family HicB_lk_antitox PF15919.5 gi|212223296|ref|YP_002306532.1| - 0.063 13.4 0.1 0.18 11.9 0.0 1.8 2 0 0 2 2 2 0 HicB_like antitoxin of bacterial toxin-antitoxin system FbpA PF05833.11 gi|212223298|ref|YP_002306534.1| - 4e-86 289.6 19.1 5.2e-86 289.2 19.1 1.1 1 0 0 1 1 1 1 Fibronectin-binding protein A N-terminus (FbpA) NFACT-R_1 PF05670.13 gi|212223298|ref|YP_002306534.1| - 5.3e-30 104.3 0.1 1.1e-29 103.2 0.1 1.6 1 0 0 1 1 1 1 NFACT protein RNA binding domain Ribosomal_S13 PF00416.22 gi|212223298|ref|YP_002306534.1| - 5.8e-06 26.7 0.4 7.4e-05 23.1 0.0 2.6 2 0 0 2 2 2 1 Ribosomal protein S13/S18 H2TH PF06831.14 gi|212223298|ref|YP_002306534.1| - 5.4e-05 23.1 0.0 0.0002 21.2 0.0 2.0 1 0 0 1 1 1 1 Formamidopyrimidine-DNA glycosylase H2TH domain SecA_PP_bind PF01043.20 gi|212223298|ref|YP_002306534.1| - 2.6 8.7 6.1 3.9 8.2 0.4 3.2 2 1 0 2 2 2 0 SecA preprotein cross-linking domain MCU PF04678.13 gi|212223298|ref|YP_002306534.1| - 3.9 7.5 6.6 6.3 6.9 0.9 2.5 2 0 0 2 2 2 0 Mitochondrial calcium uniporter Glyco_hydro_57 PF03065.15 gi|212223299|ref|YP_002306535.1| - 4.5e-64 216.7 0.9 1.2e-63 215.3 0.9 1.8 1 1 0 1 1 1 1 Glycosyl hydrolase family 57 DUF1957 PF09210.11 gi|212223299|ref|YP_002306535.1| - 1.8e-27 95.7 6.2 7.9e-27 93.6 1.1 2.7 3 0 0 3 3 3 2 Domain of unknown function (DUF1957) P-II PF00543.22 gi|212223300|ref|YP_002306536.1| - 5.2e-29 100.8 0.5 1.3e-28 99.6 0.5 1.5 1 1 0 1 1 1 1 Nitrogen regulatory protein P-II DUF2007 PF09413.10 gi|212223300|ref|YP_002306536.1| - 0.0091 16.1 0.0 0.016 15.4 0.0 1.5 1 1 0 1 1 1 1 Putative prokaryotic signal transducing protein gp45-slide_C PF09116.10 gi|212223300|ref|YP_002306536.1| - 0.087 12.9 0.0 0.1 12.7 0.0 1.1 1 0 0 1 1 1 0 gp45 sliding clamp, C terminal TINF2_N PF14973.6 gi|212223301|ref|YP_002306537.1| - 0.019 15.3 1.3 0.033 14.5 1.3 1.4 1 0 0 1 1 1 0 TERF1-interacting nuclear factor 2 N-terminus DUF627 PF04781.12 gi|212223301|ref|YP_002306537.1| - 0.11 12.5 1.3 0.23 11.5 0.3 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF627) ACCA PF03255.14 gi|212223301|ref|YP_002306537.1| - 0.52 10.2 3.3 0.8 9.6 2.8 1.6 2 1 0 2 2 2 0 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit SNF PF00209.18 gi|212223302|ref|YP_002306538.1| - 4.9e-55 187.2 39.3 4e-31 108.3 17.4 2.3 1 1 1 2 2 2 2 Sodium:neurotransmitter symporter family ELFV_dehydrog PF00208.21 gi|212223303|ref|YP_002306539.1| - 1.6e-75 254.0 0.8 2.1e-75 253.6 0.8 1.1 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ELFV_dehydrog_N PF02812.18 gi|212223303|ref|YP_002306539.1| - 1.6e-53 180.1 0.0 3.9e-53 178.8 0.0 1.7 2 0 0 2 2 2 1 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 2-Hacid_dh_C PF02826.19 gi|212223303|ref|YP_002306539.1| - 6.6e-06 25.6 0.1 1.4e-05 24.6 0.1 1.5 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IlvN PF07991.12 gi|212223303|ref|YP_002306539.1| - 0.045 13.3 0.0 0.15 11.6 0.0 1.9 2 0 0 2 2 2 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain Gp_dh_N PF00044.24 gi|212223303|ref|YP_002306539.1| - 0.11 12.8 0.2 0.35 11.2 0.0 1.9 2 0 0 2 2 2 0 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain DUF2680 PF10925.8 gi|212223303|ref|YP_002306539.1| - 0.12 12.4 0.1 0.29 11.2 0.1 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2680) BPD_transp_2 PF02653.16 gi|212223304|ref|YP_002306540.1| - 8e-50 169.5 30.5 9.3e-50 169.3 30.5 1.0 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component BPD_transp_2 PF02653.16 gi|212223305|ref|YP_002306541.1| - 2.7e-46 157.9 38.8 3.2e-46 157.7 38.8 1.0 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component Flp_Fap PF04964.14 gi|212223305|ref|YP_002306541.1| - 0.58 10.0 0.1 0.58 10.0 0.1 3.8 5 0 0 5 5 5 0 Flp/Fap pilin component MWFE PF15879.5 gi|212223305|ref|YP_002306541.1| - 4.6 7.5 4.9 11 6.3 0.9 2.9 2 0 0 2 2 2 0 NADH-ubiquinone oxidoreductase MWFE subunit ABC_tran PF00005.27 gi|212223306|ref|YP_002306542.1| - 1.4e-31 109.9 0.0 2.2e-31 109.2 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|212223306|ref|YP_002306542.1| - 5.3e-14 52.7 1.9 1.4e-06 28.3 0.1 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|212223306|ref|YP_002306542.1| - 1.3e-06 28.1 1.3 2.7e-05 23.7 1.3 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|212223306|ref|YP_002306542.1| - 3.4e-05 23.7 1.2 0.00073 19.3 0.3 2.1 2 0 0 2 2 2 1 AAA ATPase domain AAA_23 PF13476.6 gi|212223306|ref|YP_002306542.1| - 0.00012 22.7 0.7 0.00022 21.8 0.7 1.4 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|212223306|ref|YP_002306542.1| - 0.00014 21.5 0.2 0.00043 20.0 0.3 1.7 2 0 0 2 2 2 1 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|212223306|ref|YP_002306542.1| - 0.0029 17.9 0.8 0.011 16.0 0.8 1.9 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|212223306|ref|YP_002306542.1| - 0.012 16.0 0.0 0.019 15.4 0.0 1.4 1 1 0 1 1 1 0 AAA ATPase domain ABC_ATPase PF09818.9 gi|212223306|ref|YP_002306542.1| - 0.039 12.7 1.2 1 8.1 0.5 2.5 2 1 0 2 2 2 0 Predicted ATPase of the ABC class AAA_27 PF13514.6 gi|212223306|ref|YP_002306542.1| - 0.048 13.3 0.0 0.076 12.6 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_14 PF13173.6 gi|212223306|ref|YP_002306542.1| - 0.054 13.5 0.2 0.18 11.8 0.1 1.9 2 0 0 2 2 2 0 AAA domain AAA_24 PF13479.6 gi|212223306|ref|YP_002306542.1| - 0.059 13.1 0.1 0.082 12.6 0.1 1.3 1 0 0 1 1 1 0 AAA domain SbcCD_C PF13558.6 gi|212223306|ref|YP_002306542.1| - 0.06 13.6 0.0 0.29 11.4 0.0 2.1 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_30 PF13604.6 gi|212223306|ref|YP_002306542.1| - 0.061 13.0 0.3 0.16 11.7 0.2 1.6 2 0 0 2 2 2 0 AAA domain AAA_33 PF13671.6 gi|212223306|ref|YP_002306542.1| - 0.062 13.5 0.2 0.083 13.1 0.2 1.6 1 1 0 1 1 1 0 AAA domain ATPase_2 PF01637.18 gi|212223306|ref|YP_002306542.1| - 0.11 12.4 0.1 0.21 11.5 0.1 1.4 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea RsgA_GTPase PF03193.16 gi|212223306|ref|YP_002306542.1| - 0.13 12.2 0.1 0.22 11.4 0.1 1.3 1 0 0 1 1 1 0 RsgA GTPase Rad17 PF03215.15 gi|212223306|ref|YP_002306542.1| - 0.14 12.1 0.0 0.18 11.7 0.0 1.3 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_25 PF13481.6 gi|212223306|ref|YP_002306542.1| - 0.16 11.5 0.2 1.4 8.5 0.1 2.1 2 0 0 2 2 2 0 AAA domain ABC_tran PF00005.27 gi|212223307|ref|YP_002306543.1| - 2.6e-31 108.9 0.0 3.3e-31 108.6 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|212223307|ref|YP_002306543.1| - 9.7e-10 38.7 3.1 4.5e-05 23.4 1.0 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 gi|212223307|ref|YP_002306543.1| - 2.9e-07 31.2 0.1 4.1e-07 30.7 0.1 1.2 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|212223307|ref|YP_002306543.1| - 4e-07 29.7 0.1 7.6e-07 28.8 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.6 gi|212223307|ref|YP_002306543.1| - 4.8e-07 29.8 0.0 7.7e-07 29.2 0.0 1.3 1 0 0 1 1 1 1 AAA ATPase domain AAA_16 PF13191.6 gi|212223307|ref|YP_002306543.1| - 0.00011 22.6 0.0 0.00017 22.0 0.0 1.3 1 1 0 1 1 1 1 AAA ATPase domain SMC_N PF02463.19 gi|212223307|ref|YP_002306543.1| - 0.00011 21.7 0.4 0.00056 19.4 0.2 1.9 1 1 1 2 2 2 1 RecF/RecN/SMC N terminal domain RsgA_GTPase PF03193.16 gi|212223307|ref|YP_002306543.1| - 0.00078 19.4 0.7 0.003 17.5 0.1 2.1 3 0 0 3 3 3 1 RsgA GTPase T2SSE PF00437.20 gi|212223307|ref|YP_002306543.1| - 0.00092 18.4 0.1 0.0013 17.8 0.1 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_22 PF13401.6 gi|212223307|ref|YP_002306543.1| - 0.0023 18.2 0.1 0.01 16.1 0.1 2.0 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|212223307|ref|YP_002306543.1| - 0.0027 17.4 0.1 0.0086 15.8 0.0 1.7 2 0 0 2 2 2 1 AAA domain MMR_HSR1 PF01926.23 gi|212223307|ref|YP_002306543.1| - 0.0038 17.3 0.0 0.0069 16.5 0.0 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase AAA_27 PF13514.6 gi|212223307|ref|YP_002306543.1| - 0.004 16.8 0.0 0.0064 16.1 0.0 1.2 1 0 0 1 1 1 1 AAA domain DUF2813 PF11398.8 gi|212223307|ref|YP_002306543.1| - 0.037 13.3 0.0 0.059 12.6 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2813) ATPase_2 PF01637.18 gi|212223307|ref|YP_002306543.1| - 0.042 13.8 0.0 0.076 12.9 0.0 1.4 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea ABC_ATPase PF09818.9 gi|212223307|ref|YP_002306543.1| - 0.052 12.3 1.0 0.15 10.8 0.5 1.7 2 0 0 2 2 2 0 Predicted ATPase of the ABC class AAA_10 PF12846.7 gi|212223307|ref|YP_002306543.1| - 0.064 12.2 0.1 0.12 11.3 0.1 1.4 1 0 0 1 1 1 0 AAA-like domain Zeta_toxin PF06414.12 gi|212223307|ref|YP_002306543.1| - 0.088 12.1 0.0 0.15 11.4 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin AAA_13 PF13166.6 gi|212223307|ref|YP_002306543.1| - 0.1 11.2 0.0 0.14 10.8 0.0 1.1 1 0 0 1 1 1 0 AAA domain Rad17 PF03215.15 gi|212223307|ref|YP_002306543.1| - 0.13 12.2 0.0 0.25 11.3 0.0 1.4 1 0 0 1 1 1 0 Rad17 P-loop domain NACHT PF05729.12 gi|212223307|ref|YP_002306543.1| - 0.13 12.1 0.5 0.77 9.7 0.1 2.0 2 0 0 2 2 2 0 NACHT domain FtsK_SpoIIIE PF01580.18 gi|212223307|ref|YP_002306543.1| - 0.14 11.5 0.1 0.29 10.5 0.1 1.4 1 0 0 1 1 1 0 FtsK/SpoIIIE family BCA_ABC_TP_C PF12399.8 gi|212223307|ref|YP_002306543.1| - 0.15 12.0 0.2 0.29 11.1 0.2 1.5 1 0 0 1 1 1 0 Branched-chain amino acid ATP-binding cassette transporter G-alpha PF00503.20 gi|212223307|ref|YP_002306543.1| - 0.18 10.9 0.0 0.18 10.9 0.0 1.1 1 0 0 1 1 1 0 G-protein alpha subunit AAA_7 PF12775.7 gi|212223307|ref|YP_002306543.1| - 0.19 11.2 0.0 0.36 10.3 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_33 PF13671.6 gi|212223307|ref|YP_002306543.1| - 0.22 11.7 0.0 0.34 11.1 0.0 1.4 1 0 0 1 1 1 0 AAA domain Peripla_BP_6 PF13458.6 gi|212223308|ref|YP_002306544.1| - 1.2e-35 123.8 0.0 1.5e-35 123.5 0.0 1.0 1 0 0 1 1 1 1 Periplasmic binding protein ANF_receptor PF01094.28 gi|212223308|ref|YP_002306544.1| - 6e-27 94.7 0.0 7.4e-27 94.4 0.0 1.1 1 0 0 1 1 1 1 Receptor family ligand binding region Peripla_BP_5 PF13433.6 gi|212223308|ref|YP_002306544.1| - 0.00013 21.1 0.0 0.022 13.8 0.0 2.2 2 0 0 2 2 2 2 Periplasmic binding protein domain Peripla_BP_4 PF13407.6 gi|212223308|ref|YP_002306544.1| - 0.0007 19.2 0.0 0.0021 17.7 0.0 1.7 1 1 1 2 2 2 1 Periplasmic binding protein domain LppC PF04348.13 gi|212223308|ref|YP_002306544.1| - 0.0018 17.2 0.1 0.0063 15.4 0.0 1.8 2 0 0 2 2 2 1 LppC putative lipoprotein CdhD PF03599.16 gi|212223308|ref|YP_002306544.1| - 0.015 14.0 0.0 0.021 13.6 0.0 1.2 1 0 0 1 1 1 0 CO dehydrogenase/acetyl-CoA synthase delta subunit PrpR_N PF06506.11 gi|212223308|ref|YP_002306544.1| - 0.11 12.1 0.0 0.28 10.7 0.0 1.7 1 0 0 1 1 1 0 Propionate catabolism activator AAA_17 PF13207.6 gi|212223309|ref|YP_002306545.1| - 0.00032 21.1 0.0 0.0011 19.4 0.0 1.9 2 0 0 2 2 2 1 AAA domain Proteasome PF00227.26 gi|212223310|ref|YP_002306546.1| - 5.3e-55 185.9 0.2 6.6e-55 185.5 0.2 1.0 1 0 0 1 1 1 1 Proteasome subunit KH_7 PF17214.3 gi|212223311|ref|YP_002306547.1| - 5e-30 103.3 4.4 3e-27 94.4 1.3 2.7 2 0 0 2 2 2 2 KH domain Beta-Casp PF10996.8 gi|212223311|ref|YP_002306547.1| - 5.6e-25 87.8 0.0 1e-24 86.9 0.0 1.5 1 0 0 1 1 1 1 Beta-Casp domain RMMBL PF07521.12 gi|212223311|ref|YP_002306547.1| - 2.1e-19 69.2 0.2 8.8e-19 67.2 0.1 2.2 2 0 0 2 2 2 1 Zn-dependent metallo-hydrolase RNA specificity domain Lactamase_B PF00753.27 gi|212223311|ref|YP_002306547.1| - 3.3e-09 37.0 2.0 4.9e-08 33.2 2.0 2.4 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_6 PF16661.5 gi|212223311|ref|YP_002306547.1| - 5e-09 35.9 0.0 9e-09 35.0 0.0 1.4 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily domain Lactamase_B_2 PF12706.7 gi|212223311|ref|YP_002306547.1| - 1.3e-05 24.9 0.2 2.6e-05 23.9 0.2 1.5 1 0 0 1 1 1 1 Beta-lactamase superfamily domain KH_4 PF13083.6 gi|212223311|ref|YP_002306547.1| - 7.9e-05 22.5 0.0 0.00029 20.7 0.0 2.0 1 0 0 1 1 1 1 KH domain KH_2 PF07650.17 gi|212223311|ref|YP_002306547.1| - 8e-05 22.4 3.1 0.0019 18.0 0.3 2.8 1 1 1 2 2 2 1 KH domain KH_1 PF00013.29 gi|212223311|ref|YP_002306547.1| - 0.0011 18.7 0.1 0.022 14.6 0.1 2.7 2 0 0 2 2 2 1 KH domain RPEL PF02755.15 gi|212223311|ref|YP_002306547.1| - 0.037 13.7 0.1 0.095 12.4 0.1 1.8 1 0 0 1 1 1 0 RPEL repeat Lactamase_B_3 PF13483.6 gi|212223311|ref|YP_002306547.1| - 0.071 13.0 0.0 0.18 11.7 0.0 1.6 1 0 0 1 1 1 0 Beta-lactamase superfamily domain PALP PF00291.25 gi|212223312|ref|YP_002306548.1| - 2.5e-60 204.4 0.2 3.5e-60 203.9 0.2 1.2 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme PadR PF03551.14 gi|212223312|ref|YP_002306548.1| - 1.8e-10 40.6 3.1 4.5e-10 39.3 2.7 2.0 2 0 0 2 2 2 1 Transcriptional regulator PadR-like family HTH_5 PF01022.20 gi|212223312|ref|YP_002306548.1| - 5.4e-06 26.2 0.0 1.1e-05 25.1 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family DUF505 PF04458.12 gi|212223312|ref|YP_002306548.1| - 0.0002 19.9 0.3 0.00034 19.1 0.3 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF505) HTH_45 PF14947.6 gi|212223312|ref|YP_002306548.1| - 0.00044 20.2 0.2 0.0014 18.6 0.2 1.9 2 0 0 2 2 1 1 Winged helix-turn-helix HTH_27 PF13463.6 gi|212223312|ref|YP_002306548.1| - 0.00045 20.6 0.5 0.004 17.6 0.1 2.5 3 0 0 3 3 2 1 Winged helix DNA-binding domain TrmB PF01978.19 gi|212223312|ref|YP_002306548.1| - 0.00089 19.1 2.3 0.0029 17.4 0.2 2.6 3 0 0 3 3 3 1 Sugar-specific transcriptional regulator TrmB DUF4364 PF14277.6 gi|212223312|ref|YP_002306548.1| - 0.0014 18.4 0.0 0.0028 17.4 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4364) HxlR PF01638.17 gi|212223312|ref|YP_002306548.1| - 0.0046 16.8 0.1 0.0097 15.7 0.1 1.6 1 0 0 1 1 1 1 HxlR-like helix-turn-helix Cdc6_C PF09079.11 gi|212223312|ref|YP_002306548.1| - 0.0072 16.3 0.0 0.017 15.1 0.0 1.5 1 0 0 1 1 1 1 CDC6, C terminal winged helix domain SMC_ScpB PF04079.16 gi|212223312|ref|YP_002306548.1| - 0.0084 15.7 0.1 0.081 12.5 0.1 2.2 2 0 0 2 2 2 1 Segregation and condensation complex subunit ScpB HTH_20 PF12840.7 gi|212223312|ref|YP_002306548.1| - 0.015 15.4 0.0 0.034 14.2 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain DUF2250 PF10007.9 gi|212223312|ref|YP_002306548.1| - 0.018 15.1 2.3 0.31 11.2 0.3 2.8 2 1 1 3 3 3 0 Uncharacterized protein conserved in archaea (DUF2250) Replic_Relax PF13814.6 gi|212223312|ref|YP_002306548.1| - 0.029 14.4 0.1 0.049 13.7 0.1 1.4 1 0 0 1 1 1 0 Replication-relaxation HTH_12 PF08461.10 gi|212223312|ref|YP_002306548.1| - 0.03 14.2 0.7 0.087 12.8 0.7 1.9 1 0 0 1 1 1 0 Ribonuclease R winged-helix domain DUF1495 PF07381.11 gi|212223312|ref|YP_002306548.1| - 0.066 13.0 0.1 0.2 11.5 0.1 1.8 1 0 0 1 1 1 0 Winged helix DNA-binding domain (DUF1495) Ribosomal_S19e PF01090.19 gi|212223312|ref|YP_002306548.1| - 0.079 12.7 0.0 0.15 11.8 0.0 1.4 1 0 0 1 1 1 0 Ribosomal protein S19e DUF2208 PF09973.9 gi|212223313|ref|YP_002306549.1| - 0.022 14.4 1.4 0.025 14.2 1.4 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2208) PEX11 PF05648.14 gi|212223313|ref|YP_002306549.1| - 0.069 12.6 1.5 0.08 12.4 0.5 1.6 1 1 1 2 2 2 0 Peroxisomal biogenesis factor 11 (PEX11) Yip1 PF04893.17 gi|212223313|ref|YP_002306549.1| - 2.7 7.7 12.5 0.062 13.0 0.8 2.0 1 1 1 2 2 2 0 Yip1 domain Rib_5-P_isom_A PF06026.14 gi|212223314|ref|YP_002306550.1| - 2.1e-65 219.6 0.0 2.5e-65 219.3 0.0 1.1 1 0 0 1 1 1 1 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) DeoRC PF00455.22 gi|212223314|ref|YP_002306550.1| - 2.4e-07 30.8 0.0 9.5e-06 25.6 0.0 2.1 2 0 0 2 2 2 1 DeoR C terminal sensor domain Sugar-bind PF04198.13 gi|212223314|ref|YP_002306550.1| - 0.068 12.3 0.0 0.14 11.3 0.0 1.5 1 0 0 1 1 1 0 Putative sugar-binding domain PIN_5 PF08745.11 gi|212223315|ref|YP_002306551.1| - 6.8e-66 221.6 0.4 7.8e-66 221.4 0.4 1.0 1 0 0 1 1 1 1 PINc domain ribonuclease BofC_C PF08955.10 gi|212223315|ref|YP_002306551.1| - 0.056 13.5 0.1 6.8 6.8 0.0 2.9 2 1 1 3 3 3 0 BofC C-terminal domain Arabinose_Isome PF02610.15 gi|212223316|ref|YP_002306552.1| - 3e-05 23.4 0.0 4.2e-05 22.9 0.0 1.2 1 0 0 1 1 1 1 L-arabinose isomerase Class_IIIsignal PF04021.12 gi|212223317|ref|YP_002306553.1| - 0.0011 18.9 0.4 0.0015 18.4 0.4 1.2 1 0 0 1 1 1 1 Class III signal peptide SPC22 PF04573.12 gi|212223317|ref|YP_002306553.1| - 0.16 11.5 0.9 0.16 11.4 0.9 1.0 1 0 0 1 1 1 0 Signal peptidase subunit DctM PF06808.12 gi|212223318|ref|YP_002306554.1| - 2e-80 270.6 52.5 2e-80 270.6 52.5 2.9 3 1 0 3 3 3 1 Tripartite ATP-independent periplasmic transporter, DctM component DUF1850 PF08905.11 gi|212223319|ref|YP_002306555.1| - 6e-13 48.9 0.0 8e-13 48.5 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1850) NMT1_3 PF16868.5 gi|212223320|ref|YP_002306556.1| - 1.4e-86 290.5 4.6 1.6e-86 290.3 4.6 1.0 1 0 0 1 1 1 1 NMT1-like family NMT1 PF09084.11 gi|212223320|ref|YP_002306556.1| - 3.4e-12 46.8 1.6 2.3e-11 44.0 0.5 2.1 1 1 1 2 2 2 1 NMT1/THI5 like Phosphonate-bd PF12974.7 gi|212223320|ref|YP_002306556.1| - 4.1e-09 36.4 7.3 5.5e-09 36.0 1.9 2.2 1 1 0 2 2 2 1 ABC transporter, phosphonate, periplasmic substrate-binding protein SBP_bac_3 PF00497.20 gi|212223320|ref|YP_002306556.1| - 7.9e-07 28.7 1.2 6.3e-06 25.8 0.1 2.1 2 0 0 2 2 2 1 Bacterial extracellular solute-binding proteins, family 3 OpuAC PF04069.12 gi|212223320|ref|YP_002306556.1| - 0.00032 20.3 1.7 0.00044 19.9 1.7 1.3 1 0 0 1 1 1 1 Substrate binding domain of ABC-type glycine betaine transport system NMT1_2 PF13379.6 gi|212223320|ref|YP_002306556.1| - 0.0006 19.6 1.4 0.0011 18.8 1.4 1.4 1 0 0 1 1 1 1 NMT1-like family Bacillus_PapR PF05968.11 gi|212223320|ref|YP_002306556.1| - 0.12 12.2 0.3 0.32 10.9 0.3 1.7 1 0 0 1 1 1 0 Bacillus PapR protein tRNA_deacylase PF04414.12 gi|212223321|ref|YP_002306557.1| - 1.8e-66 223.6 0.0 2.2e-66 223.3 0.0 1.1 1 0 0 1 1 1 1 D-aminoacyl-tRNA deacylase Yqai PF09466.10 gi|212223321|ref|YP_002306557.1| - 0.026 14.8 0.3 2 8.8 0.0 2.7 3 0 0 3 3 3 0 Hypothetical protein Yqai Tubulin PF00091.25 gi|212223322|ref|YP_002306558.1| - 2.4e-47 161.7 0.5 4.5e-47 160.8 0.5 1.5 1 0 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain FtsZ_C PF12327.8 gi|212223322|ref|YP_002306558.1| - 4.1e-32 110.4 2.8 7.6e-32 109.5 1.3 2.2 2 0 0 2 2 2 1 FtsZ family, C-terminal domain AlaDh_PNT_C PF01262.21 gi|212223322|ref|YP_002306558.1| - 0.005 16.2 2.3 0.01 15.2 2.3 1.5 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain DUF3236 PF11576.8 gi|212223322|ref|YP_002306558.1| - 0.0086 15.8 1.0 0.017 14.8 0.2 1.9 2 0 0 2 2 2 1 Protein of unknown function (DUF3236) Tubulin_2 PF13809.6 gi|212223322|ref|YP_002306558.1| - 0.009 15.2 1.2 0.34 10.1 0.1 2.3 2 0 0 2 2 2 1 Tubulin like DUF4147 PF13660.6 gi|212223322|ref|YP_002306558.1| - 0.015 14.8 3.9 0.4 10.2 0.3 2.3 2 1 0 2 2 2 0 Domain of unknown function (DUF4147) ThiF PF00899.21 gi|212223322|ref|YP_002306558.1| - 0.071 12.5 0.0 0.21 10.9 0.0 1.7 2 0 0 2 2 2 0 ThiF family NAD_binding_7 PF13241.6 gi|212223322|ref|YP_002306558.1| - 0.1 13.1 0.5 0.48 10.9 0.1 2.1 2 1 0 2 2 2 0 Putative NAD(P)-binding GCH_III PF05165.12 gi|212223322|ref|YP_002306558.1| - 0.12 11.6 1.6 1.1 8.4 0.3 2.3 2 0 0 2 2 2 0 GTP cyclohydrolase III Peripla_BP_6 PF13458.6 gi|212223322|ref|YP_002306558.1| - 0.13 11.9 0.1 0.64 9.6 0.1 2.0 1 1 1 2 2 2 0 Periplasmic binding protein DUF1598 PF07643.11 gi|212223322|ref|YP_002306558.1| - 0.13 12.6 0.4 2.5 8.4 0.0 2.8 3 0 0 3 3 3 0 Protein of unknown function (DUF1598) SecE PF00584.20 gi|212223323|ref|YP_002306559.1| - 3.2e-07 30.2 0.3 3.5e-07 30.1 0.3 1.1 1 0 0 1 1 1 1 SecE/Sec61-gamma subunits of protein translocation complex DUF996 PF06195.13 gi|212223323|ref|YP_002306559.1| - 0.0036 17.6 0.9 0.004 17.4 0.9 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF996) Spt5-NGN PF03439.13 gi|212223324|ref|YP_002306560.1| - 3.4e-24 84.5 0.0 6e-24 83.8 0.0 1.4 1 0 0 1 1 1 1 Early transcription elongation factor of RNA pol II, NGN section KOW PF00467.29 gi|212223324|ref|YP_002306560.1| - 1.3e-08 34.4 0.9 1.3e-08 34.4 0.9 2.1 3 0 0 3 3 3 1 KOW motif Glyco_hydro_65C PF03633.15 gi|212223324|ref|YP_002306560.1| - 0.14 12.1 2.1 4 7.4 0.4 2.3 2 0 0 2 2 2 0 Glycosyl hydrolase family 65, C-terminal domain Ribosomal_L11_N PF03946.14 gi|212223325|ref|YP_002306561.1| - 1.6e-24 85.5 2.5 1.7e-24 85.4 1.3 1.7 2 0 0 2 2 2 1 Ribosomal protein L11, N-terminal domain Ribosomal_L11 PF00298.19 gi|212223325|ref|YP_002306561.1| - 1.3e-23 83.3 1.3 2.4e-23 82.4 1.3 1.5 1 0 0 1 1 1 1 Ribosomal protein L11, RNA binding domain Poly_export PF02563.16 gi|212223325|ref|YP_002306561.1| - 0.074 13.3 0.1 11 6.3 0.0 2.8 3 0 0 3 3 3 0 Polysaccharide biosynthesis/export protein Ribosomal_L1 PF00687.21 gi|212223326|ref|YP_002306562.1| - 3.1e-49 167.5 0.2 3.8e-49 167.2 0.2 1.0 1 0 0 1 1 1 1 Ribosomal protein L1p/L10e family FAM91_C PF14648.6 gi|212223326|ref|YP_002306562.1| - 0.0072 15.2 0.0 0.013 14.4 0.0 1.4 1 0 0 1 1 1 1 FAM91 C-terminus GyrB_insert PF18053.1 gi|212223326|ref|YP_002306562.1| - 0.0076 16.2 0.2 0.89 9.4 0.0 2.2 2 0 0 2 2 2 2 DNA gyrase B subunit insert domain Ribosomal_L10 PF00466.20 gi|212223327|ref|YP_002306563.1| - 4.7e-22 78.0 0.1 1.1e-21 76.8 0.1 1.6 1 0 0 1 1 1 1 Ribosomal protein L10 RL10P_insert PF17777.1 gi|212223327|ref|YP_002306563.1| - 4.8e-22 77.7 0.1 1e-21 76.7 0.1 1.6 1 0 0 1 1 1 1 Insertion domain in 60S ribosomal protein L10P Ribosomal_60s PF00428.19 gi|212223327|ref|YP_002306563.1| - 1.5e-05 25.5 11.6 1.5e-05 25.5 11.6 3.1 4 1 0 4 4 4 1 60s Acidic ribosomal protein 7TMR-HDED PF07697.11 gi|212223327|ref|YP_002306563.1| - 0.64 10.1 7.1 0.52 10.4 0.2 2.5 2 0 0 2 2 2 0 7TM-HD extracellular PBP_sp32 PF07222.12 gi|212223327|ref|YP_002306563.1| - 1.2 8.6 5.7 1.9 7.9 5.7 1.3 1 0 0 1 1 1 0 Proacrosin binding protein sp32 Ribosomal_60s PF00428.19 gi|212223328|ref|YP_002306564.1| - 4.2e-20 72.1 21.2 5e-20 71.9 21.2 1.1 1 0 0 1 1 1 1 60s Acidic ribosomal protein TetR_C_31 PF17940.1 gi|212223328|ref|YP_002306564.1| - 3.3e-05 24.0 2.4 4.2e-05 23.7 2.4 1.4 1 1 0 1 1 1 1 Tetracyclin repressor-like, C-terminal domain PHY PF00360.20 gi|212223328|ref|YP_002306564.1| - 0.065 12.5 0.1 0.074 12.4 0.1 1.1 1 0 0 1 1 1 0 Phytochrome region DUF2226 PF09987.9 gi|212223328|ref|YP_002306564.1| - 0.24 10.7 3.9 0.27 10.6 3.9 1.1 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2226) DUF1631 PF07793.11 gi|212223328|ref|YP_002306564.1| - 0.31 9.4 5.1 0.36 9.2 5.1 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1631) dUTPase PF00692.19 gi|212223330|ref|YP_002306566.1| - 1.1e-14 54.3 0.0 1.1e-12 47.7 0.0 2.0 1 1 1 2 2 2 2 dUTPase DCD PF06559.11 gi|212223330|ref|YP_002306566.1| - 0.00012 21.0 0.0 0.28 9.9 0.0 2.6 1 1 1 2 2 2 2 2'-deoxycytidine 5'-triphosphate deaminase (DCD) CBFD_NFYB_HMF PF00808.23 gi|212223331|ref|YP_002306567.1| - 5.7e-21 74.6 0.9 6.3e-21 74.4 0.9 1.0 1 0 0 1 1 1 1 Histone-like transcription factor (CBF/NF-Y) and archaeal histone Histone PF00125.24 gi|212223331|ref|YP_002306567.1| - 4.5e-11 43.2 0.5 4.9e-11 43.1 0.5 1.1 1 0 0 1 1 1 1 Core histone H2A/H2B/H3/H4 CENP-T_C PF15511.6 gi|212223331|ref|YP_002306567.1| - 5.9e-08 32.8 0.1 5.9e-08 32.8 0.1 1.0 1 0 0 1 1 1 1 Centromere kinetochore component CENP-T histone fold CENP-S PF15630.6 gi|212223331|ref|YP_002306567.1| - 5.7e-07 29.8 0.0 6.2e-07 29.7 0.0 1.1 1 0 0 1 1 1 1 CENP-S protein TFIID-31kDa PF02291.15 gi|212223331|ref|YP_002306567.1| - 2e-06 27.9 0.0 2.2e-06 27.7 0.0 1.0 1 0 0 1 1 1 1 Transcription initiation factor IID, 31kD subunit Bromo_TP PF07524.13 gi|212223331|ref|YP_002306567.1| - 5e-06 26.4 0.1 5.8e-06 26.2 0.1 1.0 1 0 0 1 1 1 1 Bromodomain associated TAF PF02969.17 gi|212223331|ref|YP_002306567.1| - 7.1e-06 26.1 0.4 7.4e-06 26.0 0.4 1.1 1 0 0 1 1 1 1 TATA box binding protein associated factor (TAF) TFIID_20kDa PF03847.13 gi|212223331|ref|YP_002306567.1| - 6.7e-05 23.3 0.0 7.6e-05 23.1 0.0 1.1 1 0 0 1 1 1 1 Transcription initiation factor TFIID subunit A TFIID-18kDa PF02269.16 gi|212223331|ref|YP_002306567.1| - 6.9e-05 22.8 0.0 7.4e-05 22.7 0.0 1.1 1 0 0 1 1 1 1 Transcription initiation factor IID, 18kD subunit DUF1931 PF09123.11 gi|212223331|ref|YP_002306567.1| - 0.0014 18.8 0.6 0.0016 18.6 0.6 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1931) PE PF00934.20 gi|212223331|ref|YP_002306567.1| - 0.0072 16.6 0.2 0.0084 16.4 0.2 1.1 1 0 0 1 1 1 1 PE family CENP-X PF09415.10 gi|212223331|ref|YP_002306567.1| - 0.019 15.3 1.4 0.023 15.0 1.4 1.1 1 0 0 1 1 1 0 CENP-S associating Centromere protein X TIP49_C PF17856.1 gi|212223331|ref|YP_002306567.1| - 0.031 14.4 0.1 0.047 13.8 0.1 1.4 1 1 0 1 1 1 0 TIP49 AAA-lid domain PCP_red PF08369.10 gi|212223331|ref|YP_002306567.1| - 0.15 12.3 3.8 0.42 10.9 0.3 2.4 2 2 0 2 2 2 0 Proto-chlorophyllide reductase 57 kD subunit Radical_SAM PF04055.21 gi|212223332|ref|YP_002306568.1| - 1.1e-25 91.0 0.0 2.5e-25 89.8 0.0 1.7 2 0 0 2 2 2 1 Radical SAM superfamily B12-binding PF02310.19 gi|212223332|ref|YP_002306568.1| - 5.9e-09 36.0 0.0 1.1e-08 35.2 0.0 1.4 1 0 0 1 1 1 1 B12 binding domain Toprim PF01751.22 gi|212223333|ref|YP_002306569.1| - 1.9e-07 31.2 0.1 3.1e-06 27.3 0.0 2.4 1 1 1 2 2 2 1 Toprim domain Toprim_4 PF13662.6 gi|212223333|ref|YP_002306569.1| - 6.5e-05 23.3 0.0 0.00015 22.2 0.0 1.7 1 1 0 1 1 1 1 Toprim domain Toprim_2 PF13155.6 gi|212223333|ref|YP_002306569.1| - 0.039 14.4 0.0 0.057 13.9 0.0 1.3 1 0 0 1 1 1 0 Toprim-like Toprim_3 PF13362.6 gi|212223333|ref|YP_002306569.1| - 0.056 13.8 0.0 0.071 13.5 0.0 1.2 1 0 0 1 1 1 0 Toprim domain Toprim_4 PF13662.6 gi|212223334|ref|YP_002306570.1| - 1.5e-13 51.0 1.4 5.4e-13 49.2 0.6 2.4 2 0 0 2 2 2 1 Toprim domain Toprim_2 PF13155.6 gi|212223334|ref|YP_002306570.1| - 9.4e-07 29.2 0.0 4.5e-06 27.0 0.0 2.2 2 0 0 2 2 2 1 Toprim-like Toprim PF01751.22 gi|212223334|ref|YP_002306570.1| - 0.00021 21.5 1.8 0.00069 19.8 0.3 2.7 2 2 0 2 2 2 1 Toprim domain NTPase_1 PF03266.15 gi|212223334|ref|YP_002306570.1| - 0.0057 16.6 4.1 0.077 12.9 0.3 2.5 2 0 0 2 2 2 2 NTPase Ribosomal_60s PF00428.19 gi|212223334|ref|YP_002306570.1| - 0.063 13.9 4.7 1.1 10.0 4.7 2.7 1 1 0 1 1 1 0 60s Acidic ribosomal protein tRNA-synt_1c PF00749.21 gi|212223335|ref|YP_002306571.1| - 3.4e-85 285.7 0.0 4.9e-85 285.2 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class I (E and Q), catalytic domain tRNA-synt_1c_C PF03950.18 gi|212223335|ref|YP_002306571.1| - 2.6e-29 102.3 0.0 6.6e-29 101.0 0.0 1.7 1 1 0 1 1 1 1 tRNA synthetases class I (E and Q), anti-codon binding domain Mitofilin PF09731.9 gi|212223335|ref|YP_002306571.1| - 0.052 12.4 0.1 0.069 12.0 0.1 1.1 1 0 0 1 1 1 0 Mitochondrial inner membrane protein tify PF06200.14 gi|212223335|ref|YP_002306571.1| - 0.18 11.2 0.5 12 5.3 0.2 2.9 3 0 0 3 3 3 0 tify domain Phosphorylase PF00343.20 gi|212223337|ref|YP_002306573.1| - 9.1e-36 123.4 0.0 9.2e-26 90.3 0.0 4.1 2 1 1 3 3 3 3 Carbohydrate phosphorylase DUF3417 PF11897.8 gi|212223337|ref|YP_002306573.1| - 1.3e-32 112.5 4.6 5.5e-32 110.5 1.6 2.7 2 0 0 2 2 2 1 Protein of unknown function (DUF3417) RE_LlaJI PF09563.10 gi|212223337|ref|YP_002306573.1| - 0.014 14.6 0.1 0.022 13.9 0.1 1.2 1 0 0 1 1 1 0 LlaJI restriction endonuclease LMP PF04778.12 gi|212223337|ref|YP_002306573.1| - 0.063 13.2 0.0 0.12 12.3 0.0 1.3 1 0 0 1 1 1 0 LMP repeated region PEPCK_GTP PF00821.18 gi|212223338|ref|YP_002306574.1| - 1.7e-107 359.4 0.0 2.2e-107 359.0 0.0 1.1 1 0 0 1 1 1 1 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain PEPCK_N PF17297.2 gi|212223338|ref|YP_002306574.1| - 9.7e-58 195.3 0.0 1.3e-57 194.9 0.0 1.2 1 0 0 1 1 1 1 Phosphoenolpyruvate carboxykinase N-terminal domain NTP_transferase PF00483.23 gi|212223339|ref|YP_002306575.1| - 2.9e-11 43.4 0.0 3.1e-11 43.3 0.0 1.0 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|212223339|ref|YP_002306575.1| - 2.8e-05 24.5 0.0 2.9e-05 24.5 0.0 1.0 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep PF00132.24 gi|212223340|ref|YP_002306576.1| - 6e-07 28.9 9.1 0.00027 20.5 3.0 3.1 1 1 1 2 2 2 2 Bacterial transferase hexapeptide (six repeats) DUF2688 PF10892.8 gi|212223340|ref|YP_002306576.1| - 0.019 14.4 0.0 0.022 14.2 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2688) DUF4954 PF16314.5 gi|212223340|ref|YP_002306576.1| - 0.026 12.7 0.1 0.029 12.5 0.1 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4954) Hexapep_2 PF14602.6 gi|212223340|ref|YP_002306576.1| - 0.037 13.8 4.4 0.037 13.8 4.4 2.7 3 1 1 4 4 4 0 Hexapeptide repeat of succinyl-transferase PGM_PMM_I PF02878.16 gi|212223341|ref|YP_002306577.1| - 2.1e-05 24.2 0.0 3.9e-05 23.4 0.0 1.5 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I Thymidylate_kin PF02223.17 gi|212223342|ref|YP_002306578.1| - 5.9e-55 185.8 0.0 6.9e-55 185.6 0.0 1.0 1 0 0 1 1 1 1 Thymidylate kinase AAA_28 PF13521.6 gi|212223342|ref|YP_002306578.1| - 7.5e-06 26.3 0.0 1.5e-05 25.3 0.0 1.5 1 1 0 1 1 1 1 AAA domain dNK PF01712.19 gi|212223342|ref|YP_002306578.1| - 8.7e-06 25.7 0.3 0.00098 19.0 0.3 2.6 1 1 0 1 1 1 1 Deoxynucleoside kinase AAA_18 PF13238.6 gi|212223342|ref|YP_002306578.1| - 0.00045 20.8 0.1 0.0061 17.1 0.1 2.5 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|212223342|ref|YP_002306578.1| - 0.00083 19.5 0.0 0.0013 18.9 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.6 gi|212223342|ref|YP_002306578.1| - 0.0017 18.8 0.0 0.0049 17.3 0.0 1.9 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|212223342|ref|YP_002306578.1| - 0.0029 17.9 0.0 0.0086 16.3 0.0 1.9 1 1 1 2 2 2 1 AAA domain SRP54 PF00448.22 gi|212223342|ref|YP_002306578.1| - 0.0068 16.1 0.0 0.011 15.3 0.0 1.4 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain KTI12 PF08433.10 gi|212223342|ref|YP_002306578.1| - 0.011 15.2 0.0 0.079 12.4 0.0 2.1 3 0 0 3 3 3 0 Chromatin associated protein KTI12 SKI PF01202.22 gi|212223342|ref|YP_002306578.1| - 0.015 15.4 0.5 3.5 7.7 0.1 2.2 2 0 0 2 2 2 0 Shikimate kinase AAA_30 PF13604.6 gi|212223342|ref|YP_002306578.1| - 0.021 14.5 0.1 0.031 14.0 0.1 1.4 1 1 0 1 1 1 0 AAA domain Ploopntkinase1 PF18748.1 gi|212223342|ref|YP_002306578.1| - 0.04 13.4 0.0 0.31 10.5 0.0 2.0 2 0 0 2 2 2 0 P-loop Nucleotide Kinase1 CbiA PF01656.23 gi|212223342|ref|YP_002306578.1| - 0.041 14.0 0.0 0.047 13.7 0.0 1.4 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain ADK PF00406.22 gi|212223342|ref|YP_002306578.1| - 0.092 12.9 0.3 2.8 8.0 0.3 2.4 1 1 0 1 1 1 0 Adenylate kinase PPK2 PF03976.14 gi|212223342|ref|YP_002306578.1| - 0.11 12.0 0.0 0.27 10.7 0.0 1.6 2 0 0 2 2 2 0 Polyphosphate kinase 2 (PPK2) Hydrolase_4 PF12146.8 gi|212223343|ref|YP_002306579.1| - 1e-15 57.7 0.0 1.6e-11 43.9 0.0 2.1 1 1 1 2 2 2 2 Serine aminopeptidase, S33 Peptidase_S15 PF02129.18 gi|212223343|ref|YP_002306579.1| - 8.9e-15 55.0 0.0 4.2e-12 46.2 0.0 2.1 2 0 0 2 2 2 2 X-Pro dipeptidyl-peptidase (S15 family) Abhydrolase_6 PF12697.7 gi|212223343|ref|YP_002306579.1| - 1.4e-12 48.7 0.0 3e-12 47.6 0.0 1.4 1 1 0 1 1 1 1 Alpha/beta hydrolase family DLH PF01738.18 gi|212223343|ref|YP_002306579.1| - 4.5e-08 32.9 0.0 0.0063 16.1 0.0 2.2 2 1 0 2 2 2 2 Dienelactone hydrolase family Abhydrolase_1 PF00561.20 gi|212223343|ref|YP_002306579.1| - 4.8e-08 32.9 0.0 1.8e-05 24.5 0.0 2.1 1 1 1 2 2 2 2 alpha/beta hydrolase fold Peptidase_S9 PF00326.21 gi|212223343|ref|YP_002306579.1| - 2.1e-07 30.6 0.0 3.1e-07 30.1 0.0 1.2 1 0 0 1 1 1 1 Prolyl oligopeptidase family FSH1 PF03959.13 gi|212223343|ref|YP_002306579.1| - 0.00097 18.8 0.0 0.0069 16.1 0.0 2.3 2 1 0 2 2 2 1 Serine hydrolase (FSH1) DUF829 PF05705.14 gi|212223343|ref|YP_002306579.1| - 0.0027 17.6 0.0 0.08 12.8 0.0 2.1 2 0 0 2 2 2 1 Eukaryotic protein of unknown function (DUF829) Abhydrolase_2 PF02230.16 gi|212223343|ref|YP_002306579.1| - 0.012 15.4 0.0 0.11 12.3 0.0 2.2 3 0 0 3 3 3 0 Phospholipase/Carboxylesterase MFS_1 PF07690.16 gi|212223344|ref|YP_002306580.1| - 4.1e-26 91.8 39.1 1.9e-13 50.1 19.5 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_2 PF13347.6 gi|212223344|ref|YP_002306580.1| - 4.2e-13 48.7 17.5 4.2e-13 48.7 17.5 1.4 1 1 0 1 1 1 1 MFS/sugar transport protein Sugar_tr PF00083.24 gi|212223344|ref|YP_002306580.1| - 0.00012 21.1 20.7 0.00019 20.5 9.1 2.3 2 0 0 2 2 2 2 Sugar (and other) transporter DUF2663 PF10864.8 gi|212223344|ref|YP_002306580.1| - 0.57 10.6 3.1 3.8 7.9 1.1 2.5 1 1 2 3 3 3 0 Protein of unknown function (DUF2663) MFS_1 PF07690.16 gi|212223345|ref|YP_002306581.1| - 3.1e-52 177.7 36.1 6.5e-35 120.7 11.9 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_2 PF13347.6 gi|212223345|ref|YP_002306581.1| - 5.9e-33 114.1 27.4 8.3e-33 113.6 27.4 1.2 1 0 0 1 1 1 1 MFS/sugar transport protein LacY_symp PF01306.19 gi|212223345|ref|YP_002306581.1| - 2.8e-09 36.3 9.3 2.8e-09 36.3 9.3 2.9 2 1 0 3 3 3 1 LacY proton/sugar symporter PUCC PF03209.15 gi|212223345|ref|YP_002306581.1| - 5.6e-07 28.9 8.3 1.3e-06 27.7 8.3 1.6 1 1 0 1 1 1 1 PUCC protein MFS_3 PF05977.13 gi|212223345|ref|YP_002306581.1| - 0.0027 16.2 2.4 0.0027 16.2 2.4 1.7 2 0 0 2 2 2 1 Transmembrane secretion effector DUF1686 PF07937.11 gi|212223345|ref|YP_002306581.1| - 0.092 12.6 0.1 0.79 9.6 0.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1686) OATP PF03137.20 gi|212223345|ref|YP_002306581.1| - 0.56 8.4 22.3 0.66 8.2 0.2 4.1 3 1 1 4 4 4 0 Organic Anion Transporter Polypeptide (OATP) family OppC_N PF12911.7 gi|212223345|ref|YP_002306581.1| - 0.57 10.2 11.7 3 7.9 0.4 4.8 4 0 0 4 4 4 0 N-terminal TM domain of oligopeptide transport permease C ERGIC_N PF13850.6 gi|212223345|ref|YP_002306581.1| - 2.2 8.7 5.8 2.1 8.8 0.2 3.2 3 0 0 3 3 3 0 Endoplasmic Reticulum-Golgi Intermediate Compartment (ERGIC) Deltameth_res PF16020.5 gi|212223345|ref|YP_002306581.1| - 8.8 6.3 6.5 4 7.4 0.2 3.2 3 0 0 3 3 3 0 Deltamethrin resistance GDPD PF03009.17 gi|212223346|ref|YP_002306582.1| - 3.6e-16 59.7 0.0 1.4e-13 51.2 0.0 2.1 1 1 1 2 2 2 2 Glycerophosphoryl diester phosphodiesterase family DUF5432 PF17497.2 gi|212223346|ref|YP_002306582.1| - 0.077 13.1 0.1 0.17 12.0 0.1 1.5 1 0 0 1 1 1 0 Family of unknown function (DUF5432) GDPD PF03009.17 gi|212223347|ref|YP_002306583.1| - 1.7e-33 116.5 0.0 1.3e-31 110.3 0.0 2.1 1 1 0 1 1 1 1 Glycerophosphoryl diester phosphodiesterase family PI-PLC-X PF00388.19 gi|212223347|ref|YP_002306583.1| - 0.014 15.0 0.0 0.026 14.1 0.0 1.4 1 0 0 1 1 1 0 Phosphatidylinositol-specific phospholipase C, X domain QRPTase_C PF01729.19 gi|212223347|ref|YP_002306583.1| - 0.046 13.5 2.8 0.65 9.7 0.1 2.2 1 1 1 2 2 2 0 Quinolinate phosphoribosyl transferase, C-terminal domain FGGY_N PF00370.21 gi|212223348|ref|YP_002306584.1| - 1.2e-88 296.8 0.0 1.7e-88 296.3 0.0 1.2 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, N-terminal domain FGGY_C PF02782.16 gi|212223348|ref|YP_002306584.1| - 3.9e-54 183.4 0.1 3e-53 180.5 0.1 2.1 2 0 0 2 2 2 1 FGGY family of carbohydrate kinases, C-terminal domain BcrAD_BadFG PF01869.20 gi|212223348|ref|YP_002306584.1| - 0.014 14.9 0.1 0.091 12.2 0.0 2.2 2 0 0 2 2 2 0 BadF/BadG/BcrA/BcrD ATPase family DEP PF00610.21 gi|212223348|ref|YP_002306584.1| - 0.073 13.1 0.0 0.62 10.2 0.0 2.3 2 0 0 2 2 2 0 Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP) DAO PF01266.24 gi|212223349|ref|YP_002306585.1| - 5.9e-69 233.3 0.2 7e-69 233.1 0.2 1.1 1 0 0 1 1 1 1 FAD dependent oxidoreductase Fer2_BFD PF04324.15 gi|212223349|ref|YP_002306585.1| - 6e-15 55.3 0.4 1.4e-14 54.1 0.4 1.7 1 0 0 1 1 1 1 BFD-like [2Fe-2S] binding domain Pyr_redox_2 PF07992.14 gi|212223349|ref|YP_002306585.1| - 2.3e-08 33.6 1.0 0.0048 16.2 0.2 2.3 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|212223349|ref|YP_002306585.1| - 1e-07 32.1 0.0 2.3e-07 31.0 0.0 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox PF00070.27 gi|212223349|ref|YP_002306585.1| - 6.6e-05 23.4 6.7 0.012 16.1 0.1 2.7 3 0 0 3 3 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.6 gi|212223349|ref|YP_002306585.1| - 0.00019 21.5 1.5 0.011 15.7 0.1 2.3 2 0 0 2 2 2 1 FAD-NAD(P)-binding HI0933_like PF03486.14 gi|212223349|ref|YP_002306585.1| - 0.00044 19.1 1.2 0.51 9.0 0.1 2.1 2 0 0 2 2 2 2 HI0933-like protein Thi4 PF01946.17 gi|212223349|ref|YP_002306585.1| - 0.0012 18.1 0.8 0.0028 16.9 0.1 1.9 2 0 0 2 2 2 1 Thi4 family Pyr_redox_3 PF13738.6 gi|212223349|ref|YP_002306585.1| - 0.0017 17.7 1.5 0.022 14.0 0.1 2.1 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Trp_halogenase PF04820.14 gi|212223349|ref|YP_002306585.1| - 0.0018 17.2 2.6 0.71 8.6 0.3 2.1 2 0 0 2 2 2 2 Tryptophan halogenase FAD_binding_3 PF01494.19 gi|212223349|ref|YP_002306585.1| - 0.0035 16.6 0.2 0.013 14.8 0.1 1.8 2 0 0 2 2 2 1 FAD binding domain FAD_binding_2 PF00890.24 gi|212223349|ref|YP_002306585.1| - 0.0077 15.4 1.3 0.055 12.5 1.3 1.9 1 1 0 1 1 1 1 FAD binding domain 3HCDH_N PF02737.18 gi|212223349|ref|YP_002306585.1| - 0.0095 15.8 0.1 0.022 14.7 0.1 1.6 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Lycopene_cycl PF05834.12 gi|212223349|ref|YP_002306585.1| - 0.032 13.3 2.5 0.11 11.5 0.1 2.8 4 0 0 4 4 4 0 Lycopene cyclase protein TrkA_N PF02254.18 gi|212223349|ref|YP_002306585.1| - 0.099 12.9 0.1 0.28 11.5 0.1 1.8 1 0 0 1 1 1 0 TrkA-N domain FAD_oxidored PF12831.7 gi|212223349|ref|YP_002306585.1| - 0.12 11.7 0.0 0.5 9.7 0.1 1.8 2 0 0 2 2 2 0 FAD dependent oxidoreductase Amino_oxidase PF01593.24 gi|212223349|ref|YP_002306585.1| - 0.15 11.3 0.0 0.23 10.7 0.0 1.3 1 0 0 1 1 1 0 Flavin containing amine oxidoreductase FMO-like PF00743.19 gi|212223349|ref|YP_002306585.1| - 0.2 10.0 0.0 0.29 9.5 0.0 1.2 1 0 0 1 1 1 0 Flavin-binding monooxygenase-like GIDA PF01134.22 gi|212223349|ref|YP_002306585.1| - 0.61 9.1 2.6 4.1 6.4 0.2 2.1 2 0 0 2 2 2 0 Glucose inhibited division protein A Pyr_redox_2 PF07992.14 gi|212223350|ref|YP_002306586.1| - 8.7e-31 107.2 1.1 2e-30 106.1 1.1 1.9 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|212223350|ref|YP_002306586.1| - 7.8e-14 52.0 2.0 0.00026 21.5 0.3 3.5 3 0 0 3 3 3 3 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.7 gi|212223350|ref|YP_002306586.1| - 7.9e-14 51.8 0.0 6.6e-12 45.5 0.0 2.2 2 0 0 2 2 2 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|212223350|ref|YP_002306586.1| - 1.4e-12 47.5 5.9 1.3e-07 31.1 0.9 4.2 3 1 1 4 4 4 3 FAD binding domain Pyr_redox_3 PF13738.6 gi|212223350|ref|YP_002306586.1| - 2.2e-11 43.6 0.7 0.00015 21.1 0.0 2.6 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|212223350|ref|YP_002306586.1| - 1.4e-10 41.2 0.1 8.1e-07 29.2 0.0 2.6 2 0 0 2 2 2 2 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.14 gi|212223350|ref|YP_002306586.1| - 5.7e-09 35.2 3.4 1.1e-07 30.9 0.2 2.8 3 0 0 3 3 3 1 HI0933-like protein DAO PF01266.24 gi|212223350|ref|YP_002306586.1| - 7.3e-08 32.4 9.2 0.001 18.8 0.6 3.8 3 1 1 4 4 4 2 FAD dependent oxidoreductase Thi4 PF01946.17 gi|212223350|ref|YP_002306586.1| - 1.5e-06 27.6 3.2 0.0016 17.8 0.1 2.7 2 1 0 2 2 2 2 Thi4 family Lycopene_cycl PF05834.12 gi|212223350|ref|YP_002306586.1| - 2.5e-06 26.8 4.2 0.00058 19.0 0.7 3.1 3 0 0 3 3 3 1 Lycopene cyclase protein GIDA PF01134.22 gi|212223350|ref|YP_002306586.1| - 2.9e-06 26.6 1.0 5e-06 25.9 0.1 1.8 2 0 0 2 2 2 1 Glucose inhibited division protein A FAD_binding_3 PF01494.19 gi|212223350|ref|YP_002306586.1| - 5.8e-05 22.5 2.0 0.0051 16.1 0.1 2.5 3 0 0 3 3 3 2 FAD binding domain NAD_binding_7 PF13241.6 gi|212223350|ref|YP_002306586.1| - 0.00023 21.6 0.2 0.042 14.3 0.1 2.5 2 0 0 2 2 2 1 Putative NAD(P)-binding AlaDh_PNT_C PF01262.21 gi|212223350|ref|YP_002306586.1| - 0.00048 19.5 0.2 0.00048 19.5 0.2 2.1 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain 2-Hacid_dh_C PF02826.19 gi|212223350|ref|YP_002306586.1| - 0.0031 16.9 1.6 1.7 7.9 0.0 2.3 2 0 0 2 2 2 2 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ELFV_dehydrog PF00208.21 gi|212223350|ref|YP_002306586.1| - 0.036 13.8 1.4 0.2 11.4 0.4 2.6 2 1 0 2 2 2 0 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase UDPG_MGDP_dh_N PF03721.14 gi|212223350|ref|YP_002306586.1| - 0.039 13.5 2.3 1.1 8.8 0.1 2.9 3 0 0 3 3 3 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 3HCDH_N PF02737.18 gi|212223350|ref|YP_002306586.1| - 0.052 13.4 0.5 3.7 7.4 0.0 2.4 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Trp_halogenase PF04820.14 gi|212223350|ref|YP_002306586.1| - 0.4 9.5 1.3 0.98 8.2 0.1 1.9 2 0 0 2 2 2 0 Tryptophan halogenase DUF1667 PF07892.11 gi|212223351|ref|YP_002306587.1| - 1.1e-26 92.7 1.4 1.5e-26 92.3 1.4 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1667) Molybdop_Fe4S4 PF04879.16 gi|212223351|ref|YP_002306587.1| - 0.00014 21.8 1.3 0.00047 20.1 1.3 1.9 1 1 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain Rnk_N PF14760.6 gi|212223353|ref|YP_002306589.1| - 0.098 13.2 1.2 0.15 12.6 1.2 1.3 1 0 0 1 1 1 0 Rnk N-terminus TetR_C_29 PF17938.1 gi|212223353|ref|YP_002306589.1| - 0.11 12.6 0.1 0.13 12.3 0.1 1.2 1 0 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain PrsW-protease PF13367.6 gi|212223354|ref|YP_002306590.1| - 5.7e-31 107.5 14.3 8e-31 107.0 14.3 1.2 1 0 0 1 1 1 1 PrsW family intramembrane metalloprotease YhfC PF10086.9 gi|212223354|ref|YP_002306590.1| - 0.00016 21.1 3.6 0.00016 21.1 3.6 2.2 2 0 0 2 2 2 1 YhfC intramembrane metalloprotease UPF0730 PF15827.5 gi|212223354|ref|YP_002306590.1| - 0.97 9.2 2.4 5.9 6.7 0.1 2.6 3 0 0 3 3 3 0 UPF0730 unknown protein family Metallophos PF00149.28 gi|212223355|ref|YP_002306591.1| - 2.7e-07 31.3 2.0 4.8e-07 30.5 2.0 1.6 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|212223355|ref|YP_002306591.1| - 0.0015 18.8 0.0 0.0021 18.3 0.0 1.3 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain HAD_2 PF13419.6 gi|212223357|ref|YP_002306593.1| - 5e-12 46.3 0.0 7.9e-12 45.6 0.0 1.4 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|212223357|ref|YP_002306593.1| - 1.6e-05 25.3 0.0 2.1e-05 24.9 0.0 1.3 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|212223357|ref|YP_002306593.1| - 7.6e-05 23.2 0.3 0.00012 22.5 0.3 1.4 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.6 gi|212223357|ref|YP_002306593.1| - 0.0058 16.7 0.0 2 8.6 0.0 2.3 2 0 0 2 2 2 2 Haloacid dehalogenase-like hydrolase DUF3386 PF11866.8 gi|212223357|ref|YP_002306593.1| - 0.03 13.9 0.1 0.047 13.2 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3386) NT5C PF06941.12 gi|212223357|ref|YP_002306593.1| - 0.04 13.8 0.0 2.1 8.2 0.0 2.3 2 0 0 2 2 2 0 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C) Hydrolase_3 PF08282.12 gi|212223357|ref|YP_002306593.1| - 0.18 11.5 0.0 0.92 9.2 0.0 1.9 2 0 0 2 2 2 0 haloacid dehalogenase-like hydrolase Zn_dep_PLPC PF00882.18 gi|212223358|ref|YP_002306594.1| - 1.9e-05 24.8 1.6 0.00028 20.9 0.3 2.3 2 0 0 2 2 2 1 Zinc dependent phospholipase C NHL PF01436.21 gi|212223358|ref|YP_002306594.1| - 0.02 14.9 0.0 0.056 13.5 0.0 1.8 2 0 0 2 2 2 0 NHL repeat Phage_tail_X PF05489.12 gi|212223358|ref|YP_002306594.1| - 0.021 14.5 0.0 6.4 6.5 0.0 2.6 2 0 0 2 2 2 0 Phage Tail Protein X TPR_2 PF07719.17 gi|212223358|ref|YP_002306594.1| - 0.037 14.2 0.3 0.11 12.7 0.3 1.8 1 0 0 1 1 1 0 Tetratricopeptide repeat SPO22 PF08631.10 gi|212223358|ref|YP_002306594.1| - 0.045 13.2 0.0 0.067 12.7 0.0 1.2 1 0 0 1 1 1 0 Meiosis protein SPO22/ZIP4 like TPR_1 PF00515.28 gi|212223358|ref|YP_002306594.1| - 0.088 12.7 0.2 0.25 11.3 0.2 1.9 1 0 0 1 1 1 0 Tetratricopeptide repeat GDC-P PF02347.16 gi|212223359|ref|YP_002306595.1| - 4.4e-124 414.6 0.0 4.9e-124 414.4 0.0 1.0 1 0 0 1 1 1 1 Glycine cleavage system P-protein Aminotran_5 PF00266.19 gi|212223359|ref|YP_002306595.1| - 0.00021 20.4 0.0 0.00038 19.5 0.0 1.4 1 0 0 1 1 1 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.20 gi|212223359|ref|YP_002306595.1| - 0.0025 16.4 0.0 0.0042 15.7 0.0 1.3 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme P53_tetramer PF07710.11 gi|212223359|ref|YP_002306595.1| - 0.19 11.1 1.5 0.48 9.8 0.1 2.2 2 0 0 2 2 2 0 P53 tetramerisation motif GDC-P PF02347.16 gi|212223360|ref|YP_002306596.1| - 1.9e-12 46.8 0.0 2.8e-10 39.6 0.0 2.1 2 0 0 2 2 2 2 Glycine cleavage system P-protein Aminotran_5 PF00266.19 gi|212223360|ref|YP_002306596.1| - 4.8e-09 35.7 0.0 1.2e-08 34.3 0.0 1.6 1 1 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.21 gi|212223360|ref|YP_002306596.1| - 9.3e-05 21.8 0.0 0.00013 21.3 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase Aminotran_1_2 PF00155.21 gi|212223360|ref|YP_002306596.1| - 0.00011 21.5 0.0 0.00025 20.4 0.0 1.5 2 0 0 2 2 2 1 Aminotransferase class I and II Pyridoxal_deC PF00282.19 gi|212223360|ref|YP_002306596.1| - 0.00079 18.2 0.0 0.22 10.2 0.0 2.1 2 0 0 2 2 2 2 Pyridoxal-dependent decarboxylase conserved domain Sld3_N PF18523.1 gi|212223361|ref|YP_002306597.1| - 0.0053 16.9 0.0 0.0068 16.5 0.0 1.1 1 0 0 1 1 1 1 Sld3 N-terminal domain DUF5342 PF17277.2 gi|212223361|ref|YP_002306597.1| - 0.019 15.3 0.0 7.1 7.0 0.1 2.1 1 1 1 2 2 2 0 Family of unknown function (DUF5342) POTRA_2 PF08479.11 gi|212223361|ref|YP_002306597.1| - 0.027 14.3 0.0 0.039 13.8 0.0 1.2 1 0 0 1 1 1 0 POTRA domain, ShlB-type RNA_pol_Rpb5_C PF01191.19 gi|212223362|ref|YP_002306598.1| - 4.1e-31 106.7 0.1 4.6e-31 106.5 0.1 1.0 1 0 0 1 1 1 1 RNA polymerase Rpb5, C-terminal domain Rad50_zn_hook PF04423.14 gi|212223362|ref|YP_002306598.1| - 0.036 13.9 0.9 0.052 13.4 0.9 1.3 1 0 0 1 1 1 0 Rad50 zinc hook motif RNA_pol_Rpb2_6 PF00562.28 gi|212223363|ref|YP_002306599.1| - 3.7e-133 444.4 0.0 5.3e-133 443.8 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 6 RNA_pol_Rpb2_1 PF04563.15 gi|212223363|ref|YP_002306599.1| - 5.2e-55 186.1 0.0 7.8e-55 185.5 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase beta subunit RNA_pol_Rpb2_2 PF04561.14 gi|212223363|ref|YP_002306599.1| - 2.6e-40 138.1 0.1 5.9e-40 136.9 0.1 1.7 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 2 RNA_pol_Rpb2_3 PF04565.16 gi|212223363|ref|YP_002306599.1| - 1.2e-30 105.4 0.0 2.4e-30 104.5 0.0 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 3 RNA_pol_Rpb2_7 PF04560.20 gi|212223363|ref|YP_002306599.1| - 1.7e-30 105.3 0.2 4e-30 104.1 0.2 1.7 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 7 RNA_pol_Rpb2_4 PF04566.13 gi|212223363|ref|YP_002306599.1| - 8.8e-20 70.8 2.5 2e-19 69.6 2.5 1.7 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 4 RNA_pol_Rpb2_5 PF04567.17 gi|212223363|ref|YP_002306599.1| - 1.2e-08 35.4 0.6 3.2e-08 34.0 0.6 1.7 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 5 NOB1_Zn_bind PF08772.11 gi|212223363|ref|YP_002306599.1| - 0.016 15.3 1.3 0.021 15.0 0.1 1.8 2 0 0 2 2 1 0 Nin one binding (NOB1) Zn-ribbon like Auto_anti-p27 PF06677.12 gi|212223363|ref|YP_002306599.1| - 0.082 13.1 1.5 0.18 12.0 1.5 1.5 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Cys_rich_CPCC PF14206.6 gi|212223363|ref|YP_002306599.1| - 0.21 11.4 0.5 0.42 10.5 0.5 1.5 1 0 0 1 1 1 0 Cysteine-rich CPCC TF_Zn_Ribbon PF08271.12 gi|212223363|ref|YP_002306599.1| - 0.27 10.8 2.0 1.1 8.8 1.9 2.1 1 1 1 2 2 2 0 TFIIB zinc-binding RNA_pol_Rpb1_1 PF04997.12 gi|212223364|ref|YP_002306600.1| - 2e-106 355.9 0.0 2.7e-106 355.4 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 1 RNA_pol_Rpb1_2 PF00623.20 gi|212223364|ref|YP_002306600.1| - 1.7e-74 249.6 0.1 2.7e-74 248.9 0.1 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 2 RNA_pol_Rpb1_3 PF04983.18 gi|212223364|ref|YP_002306600.1| - 4.7e-37 127.3 0.0 9.2e-37 126.4 0.0 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 3 RNA_pol_Rpb1_4 PF05000.17 gi|212223364|ref|YP_002306600.1| - 3.2e-31 107.5 0.0 7.6e-31 106.3 0.0 1.7 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 4 RNA_pol_Rpb1_5 PF04998.17 gi|212223364|ref|YP_002306600.1| - 2.1e-29 102.8 0.0 4.4e-29 101.7 0.0 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 5 zf-RING_7 PF02591.15 gi|212223364|ref|YP_002306600.1| - 0.28 11.4 5.7 20 5.5 0.1 3.8 4 0 0 4 4 4 0 C4-type zinc ribbon domain zf-ribbon_3 PF13248.6 gi|212223364|ref|YP_002306600.1| - 0.69 9.4 2.7 1.3 8.5 0.1 2.5 3 0 0 3 3 3 0 zinc-ribbon domain Nudix_N_2 PF14803.6 gi|212223364|ref|YP_002306600.1| - 3.9 7.5 6.7 1.1 9.2 0.1 3.2 3 0 0 3 3 3 0 Nudix N-terminal RNA_pol_Rpb1_5 PF04998.17 gi|212223365|ref|YP_002306601.1| - 2.8e-57 194.2 1.5 3.7e-57 193.8 1.5 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 5 Ribosomal_L7Ae PF01248.26 gi|212223366|ref|YP_002306602.1| - 1.2e-19 69.8 0.0 1.3e-19 69.7 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family KH_2 PF07650.17 gi|212223367|ref|YP_002306603.1| - 4.5e-21 74.5 3.6 1.2e-17 63.4 0.2 2.2 1 1 1 2 2 2 2 KH domain KH_5 PF13184.6 gi|212223367|ref|YP_002306603.1| - 6.2e-08 32.6 0.6 1.1e-06 28.6 0.1 2.3 2 1 0 2 2 2 1 NusA-like KH domain KH_4 PF13083.6 gi|212223367|ref|YP_002306603.1| - 2.6e-06 27.2 1.0 0.00081 19.2 0.2 2.1 2 0 0 2 2 2 2 KH domain KH_1 PF00013.29 gi|212223367|ref|YP_002306603.1| - 0.00032 20.5 4.1 0.034 14.0 0.3 2.6 1 1 1 2 2 2 2 KH domain PfkB PF00294.24 gi|212223367|ref|YP_002306603.1| - 0.09 12.1 0.0 0.1 11.9 0.0 1.1 1 0 0 1 1 1 0 pfkB family carbohydrate kinase Ribosom_S12_S23 PF00164.25 gi|212223368|ref|YP_002306604.1| - 6.9e-50 167.4 1.9 8.7e-50 167.1 1.9 1.1 1 0 0 1 1 1 1 Ribosomal protein S12/S23 Ribosomal_S7 PF00177.21 gi|212223369|ref|YP_002306605.1| - 9.8e-40 135.6 2.5 1.4e-39 135.1 2.5 1.2 1 0 0 1 1 1 1 Ribosomal protein S7p/S5e DUF713 PF05218.14 gi|212223369|ref|YP_002306605.1| - 0.012 15.3 0.0 0.017 14.8 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF713) Phosphodiest PF01663.22 gi|212223370|ref|YP_002306606.1| - 4e-49 168.1 0.2 4.6e-49 167.9 0.2 1.0 1 0 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase Metalloenzyme PF01676.18 gi|212223370|ref|YP_002306606.1| - 1.2e-09 37.9 0.0 2.5e-08 33.6 0.0 2.5 3 0 0 3 3 3 1 Metalloenzyme superfamily Sulfatase PF00884.23 gi|212223370|ref|YP_002306606.1| - 7.2e-09 35.5 0.0 0.00037 20.0 0.0 2.5 1 1 0 2 2 2 2 Sulfatase Rhomboid_N PF12122.8 gi|212223370|ref|YP_002306606.1| - 0.18 12.0 0.0 0.37 11.0 0.0 1.5 1 0 0 1 1 1 0 Cytoplasmic N-terminal domain of rhomboid serine protease PemK_toxin PF02452.17 gi|212223371|ref|YP_002306607.1| - 3.8e-10 40.2 0.0 4.4e-10 39.9 0.0 1.0 1 0 0 1 1 1 1 PemK-like, MazF-like toxin of type II toxin-antitoxin system DUF3876 PF12992.7 gi|212223371|ref|YP_002306607.1| - 0.16 12.0 0.0 0.21 11.7 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function, B. Theta Gene description (DUF3876) Peptidase_M3_N PF08439.10 gi|212223372|ref|YP_002306608.1| - 0.0025 18.1 2.5 0.5 10.7 0.1 2.1 2 0 0 2 2 2 2 Oligopeptidase F NTPase_1 PF03266.15 gi|212223372|ref|YP_002306608.1| - 0.041 13.8 0.6 0.041 13.8 0.6 1.0 1 0 0 1 1 1 0 NTPase YvrJ PF12841.7 gi|212223372|ref|YP_002306608.1| - 1.5 8.4 4.0 2.5 7.7 1.0 2.1 1 1 0 1 1 1 0 YvrJ protein family Nre_N PF04894.12 gi|212223373|ref|YP_002306609.1| - 4.9e-103 344.7 0.0 6e-103 344.4 0.0 1.1 1 0 0 1 1 1 1 Archaeal Nre, N-terminal Nre_C PF04895.12 gi|212223373|ref|YP_002306609.1| - 4.1e-37 126.4 0.5 6.3e-37 125.9 0.5 1.3 1 0 0 1 1 1 1 Archaeal Nre, C-terminal SKA2 PF16740.5 gi|212223373|ref|YP_002306609.1| - 0.22 11.3 0.0 0.37 10.6 0.0 1.3 1 0 0 1 1 1 0 Spindle and kinetochore-associated protein 2 ThiS PF02597.20 gi|212223374|ref|YP_002306610.1| - 6.7e-11 42.7 0.3 7.8e-11 42.5 0.3 1.0 1 0 0 1 1 1 1 ThiS family Ub-Mut7C PF14451.6 gi|212223374|ref|YP_002306610.1| - 0.013 15.3 0.1 0.014 15.3 0.1 1.1 1 0 0 1 1 1 0 Mut7-C ubiquitin Hema_stalk PF08720.10 gi|212223374|ref|YP_002306610.1| - 0.068 12.9 0.0 0.073 12.8 0.0 1.0 1 0 0 1 1 1 0 Influenza C hemagglutinin stalk Aminotran_1_2 PF00155.21 gi|212223377|ref|YP_002306613.1| - 2.1e-61 208.1 0.0 2.4e-61 207.9 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.21 gi|212223377|ref|YP_002306613.1| - 1.5e-07 31.0 0.0 2.3e-07 30.4 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.17 gi|212223377|ref|YP_002306613.1| - 7.9e-06 25.4 0.0 2.9e-05 23.6 0.0 1.7 2 0 0 2 2 2 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.19 gi|212223377|ref|YP_002306613.1| - 4.7e-05 22.5 0.0 0.0021 17.1 0.0 2.7 2 1 1 3 3 3 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.20 gi|212223377|ref|YP_002306613.1| - 0.0051 15.4 0.0 0.0079 14.8 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme AbrB PF05145.12 gi|212223378|ref|YP_002306614.1| - 0.0059 15.6 1.7 0.0074 15.3 1.7 1.0 1 0 0 1 1 1 1 Transition state regulatory protein AbrB Ac76 PF05814.11 gi|212223378|ref|YP_002306614.1| - 0.064 13.3 0.8 0.1 12.6 0.8 1.4 1 0 0 1 1 1 0 Orf76 (Ac76) DUF3464 PF11947.8 gi|212223378|ref|YP_002306614.1| - 1 9.1 2.6 1.2 8.9 2.0 1.3 1 1 0 1 1 1 0 Photosynthesis affected mutant 68 Lys_export PF03956.13 gi|212223379|ref|YP_002306615.1| - 1e-57 194.8 12.7 1.2e-57 194.5 12.7 1.0 1 0 0 1 1 1 1 Lysine exporter LysO HTH_11 PF08279.12 gi|212223380|ref|YP_002306616.1| - 3.2e-05 23.8 0.0 3.5e-05 23.7 0.0 1.0 1 0 0 1 1 1 1 HTH domain HARE-HTH PF05066.13 gi|212223380|ref|YP_002306616.1| - 5.2e-05 23.6 0.3 0.0014 19.0 0.1 2.0 2 0 0 2 2 2 1 HB1, ASXL, restriction endonuclease HTH domain Rrf2 PF02082.20 gi|212223380|ref|YP_002306616.1| - 0.001 19.3 0.1 0.0012 19.2 0.1 1.1 1 0 0 1 1 1 1 Transcriptional regulator TBPIP PF07106.13 gi|212223380|ref|YP_002306616.1| - 0.0018 18.2 0.2 0.0024 17.7 0.2 1.2 1 0 0 1 1 1 1 TBPIP/Hop2 winged helix domain GntR PF00392.21 gi|212223380|ref|YP_002306616.1| - 0.004 16.8 0.0 0.0048 16.5 0.0 1.1 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family TFIIE_beta PF02186.15 gi|212223380|ref|YP_002306616.1| - 0.005 17.1 0.1 0.005 17.1 0.1 1.1 1 0 0 1 1 1 1 TFIIE beta subunit core domain Phage_terminase PF10668.9 gi|212223380|ref|YP_002306616.1| - 0.0055 16.7 0.4 0.025 14.6 0.4 1.8 1 1 0 1 1 1 1 Phage terminase small subunit TrmB PF01978.19 gi|212223380|ref|YP_002306616.1| - 0.006 16.4 0.1 0.0065 16.3 0.1 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB SMC_ScpB PF04079.16 gi|212223380|ref|YP_002306616.1| - 0.015 15.0 0.1 0.016 14.8 0.1 1.1 1 0 0 1 1 1 0 Segregation and condensation complex subunit ScpB RNA_pol_Rpc34 PF05158.12 gi|212223380|ref|YP_002306616.1| - 0.015 14.7 0.1 0.015 14.7 0.1 1.0 1 0 0 1 1 1 0 RNA polymerase Rpc34 subunit HTH_5 PF01022.20 gi|212223380|ref|YP_002306616.1| - 0.021 14.7 0.0 0.03 14.2 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family DUF3783 PF12646.7 gi|212223380|ref|YP_002306616.1| - 0.028 14.4 0.0 0.11 12.5 0.0 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF3783) FaeA PF04703.12 gi|212223380|ref|YP_002306616.1| - 0.033 14.6 0.0 0.035 14.5 0.0 1.1 1 0 0 1 1 1 0 FaeA-like protein HTH_Crp_2 PF13545.6 gi|212223380|ref|YP_002306616.1| - 0.034 14.1 0.0 0.038 14.0 0.0 1.1 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain TFIIE_alpha PF02002.17 gi|212223380|ref|YP_002306616.1| - 0.038 13.8 0.2 0.041 13.8 0.2 1.0 1 0 0 1 1 1 0 TFIIE alpha subunit DUF2582 PF10771.9 gi|212223380|ref|YP_002306616.1| - 0.038 14.1 0.0 0.048 13.8 0.0 1.1 1 0 0 1 1 1 0 Winged helix-turn-helix domain (DUF2582) HrcA_DNA-bdg PF03444.15 gi|212223380|ref|YP_002306616.1| - 0.039 13.6 0.1 0.043 13.5 0.1 1.1 1 0 0 1 1 1 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding Retro_M PF02813.14 gi|212223380|ref|YP_002306616.1| - 0.043 14.2 0.1 0.047 14.1 0.1 1.2 1 0 0 1 1 1 0 Retroviral M domain HTH_24 PF13412.6 gi|212223380|ref|YP_002306616.1| - 0.043 13.4 0.1 0.058 13.0 0.1 1.2 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Phage_rep_O PF04492.13 gi|212223380|ref|YP_002306616.1| - 0.051 14.2 0.0 0.058 14.0 0.0 1.1 1 0 0 1 1 1 0 Bacteriophage replication protein O HTH_IclR PF09339.10 gi|212223380|ref|YP_002306616.1| - 0.051 13.4 0.0 0.2 11.5 0.0 1.7 1 1 1 2 2 2 0 IclR helix-turn-helix domain HTH_20 PF12840.7 gi|212223380|ref|YP_002306616.1| - 0.053 13.6 0.0 0.088 12.9 0.0 1.4 1 1 0 1 1 1 0 Helix-turn-helix domain DUF1992 PF09350.10 gi|212223380|ref|YP_002306616.1| - 0.057 13.6 0.1 0.082 13.1 0.1 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF1992) z-alpha PF02295.17 gi|212223380|ref|YP_002306616.1| - 0.059 13.4 0.3 0.065 13.3 0.3 1.1 1 0 0 1 1 1 0 Adenosine deaminase z-alpha domain HTH_12 PF08461.10 gi|212223380|ref|YP_002306616.1| - 0.059 13.3 0.4 0.22 11.5 0.1 1.8 1 1 1 2 2 2 0 Ribonuclease R winged-helix domain CdAMP_rec PF06153.11 gi|212223380|ref|YP_002306616.1| - 0.13 12.5 0.0 0.13 12.5 0.0 1.1 1 0 0 1 1 1 0 Cyclic-di-AMP receptor Phage_pRha PF09669.10 gi|212223380|ref|YP_002306616.1| - 0.14 12.7 0.0 0.16 12.5 0.0 1.1 1 0 0 1 1 1 0 Phage regulatory protein Rha (Phage_pRha) Ribosomal_L44 PF00935.19 gi|212223381|ref|YP_002306617.1| - 3.4e-26 91.5 6.1 4.4e-26 91.2 6.1 1.1 1 0 0 1 1 1 1 Ribosomal protein L44 Ribosomal_L33 PF00471.20 gi|212223381|ref|YP_002306617.1| - 0.0004 20.8 5.2 0.0013 19.1 2.8 2.3 2 0 0 2 2 2 1 Ribosomal protein L33 Elf1 PF05129.13 gi|212223381|ref|YP_002306617.1| - 0.0042 17.1 0.5 0.46 10.6 0.0 2.2 2 0 0 2 2 2 2 Transcription elongation factor Elf1 like Nudix_N_2 PF14803.6 gi|212223381|ref|YP_002306617.1| - 0.01 15.8 1.5 3.7 7.5 0.1 2.3 2 0 0 2 2 2 0 Nudix N-terminal NOB1_Zn_bind PF08772.11 gi|212223381|ref|YP_002306617.1| - 0.025 14.7 2.1 0.066 13.4 0.3 2.1 2 0 0 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like HypA PF01155.19 gi|212223381|ref|YP_002306617.1| - 0.078 13.0 0.4 0.3 11.1 0.4 1.8 1 1 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Zn_Tnp_IS1595 PF12760.7 gi|212223381|ref|YP_002306617.1| - 0.14 12.2 2.4 2.5 8.1 0.4 2.2 2 0 0 2 2 2 0 Transposase zinc-ribbon domain zf-H2C2_2 PF13465.6 gi|212223381|ref|YP_002306617.1| - 0.73 10.4 7.3 4.7 7.8 0.2 2.6 2 1 0 2 2 2 0 Zinc-finger double domain Ribosomal_S27e PF01667.17 gi|212223382|ref|YP_002306618.1| - 2.2e-26 91.3 0.8 2.5e-26 91.2 0.8 1.0 1 0 0 1 1 1 1 Ribosomal protein S27 zf-RanBP PF00641.18 gi|212223382|ref|YP_002306618.1| - 0.00097 18.4 1.1 0.059 12.7 0.1 2.1 2 0 0 2 2 2 1 Zn-finger in Ran binding protein and others TF_Zn_Ribbon PF08271.12 gi|212223382|ref|YP_002306618.1| - 0.0021 17.5 0.7 0.0023 17.4 0.7 1.1 1 0 0 1 1 1 1 TFIIB zinc-binding HypA PF01155.19 gi|212223382|ref|YP_002306618.1| - 0.011 15.8 0.1 0.012 15.6 0.1 1.1 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Zn-ribbon_8 PF09723.10 gi|212223382|ref|YP_002306618.1| - 0.062 13.4 0.2 0.098 12.8 0.2 1.3 1 0 0 1 1 1 0 Zinc ribbon domain OrfB_Zn_ribbon PF07282.11 gi|212223382|ref|YP_002306618.1| - 0.079 12.9 0.1 0.098 12.6 0.1 1.1 1 0 0 1 1 1 0 Putative transposase DNA-binding domain zinc_ribbon_6 PF14599.6 gi|212223382|ref|YP_002306618.1| - 0.1 12.6 0.1 0.14 12.2 0.1 1.2 1 0 0 1 1 1 0 Zinc-ribbon zf-C2H2_11 PF16622.5 gi|212223382|ref|YP_002306618.1| - 0.22 11.3 2.6 2.4 8.0 0.3 2.1 2 0 0 2 2 2 0 zinc-finger C2H2-type TFIIS_C PF01096.18 gi|212223382|ref|YP_002306618.1| - 0.49 10.3 2.2 7.7 6.5 0.1 2.1 1 1 1 2 2 2 0 Transcription factor S-II (TFIIS) zf-CCHC_6 PF15288.6 gi|212223382|ref|YP_002306618.1| - 2.2 8.2 5.2 5.1 7.0 1.0 2.2 2 0 0 2 2 2 0 Zinc knuckle EIF_2_alpha PF07541.12 gi|212223383|ref|YP_002306619.1| - 1.4e-23 83.2 1.0 2.4e-23 82.4 0.1 1.9 2 1 0 2 2 2 1 Eukaryotic translation initiation factor 2 alpha subunit S1 PF00575.23 gi|212223383|ref|YP_002306619.1| - 1.5e-14 54.1 0.1 4e-14 52.7 0.1 1.8 1 0 0 1 1 1 1 S1 RNA binding domain DUF5105 PF17118.5 gi|212223383|ref|YP_002306619.1| - 0.011 15.6 1.2 0.025 14.4 0.8 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF5105) DUSP PF06337.12 gi|212223383|ref|YP_002306619.1| - 0.031 14.9 0.4 0.21 12.2 0.3 2.1 2 0 0 2 2 2 0 DUSP domain Nop10p PF04135.12 gi|212223384|ref|YP_002306620.1| - 1.5e-27 95.4 4.7 1.6e-27 95.2 4.7 1.0 1 0 0 1 1 1 1 Nucleolar RNA-binding protein, Nop10p family RecR PF02132.15 gi|212223384|ref|YP_002306620.1| - 0.00017 21.1 0.8 0.00021 20.8 0.8 1.2 1 0 0 1 1 1 1 RecR protein PolC_DP2 PF03833.13 gi|212223384|ref|YP_002306620.1| - 0.00032 18.7 0.1 0.00032 18.7 0.1 1.0 1 0 0 1 1 1 1 DNA polymerase II large subunit DP2 DNA_ligase_ZBD PF03119.16 gi|212223384|ref|YP_002306620.1| - 0.00038 20.4 2.2 0.084 12.9 0.2 2.3 2 0 0 2 2 2 2 NAD-dependent DNA ligase C4 zinc finger domain zf-NADH-PPase PF09297.11 gi|212223384|ref|YP_002306620.1| - 0.00076 19.1 4.2 0.11 12.2 0.5 2.3 2 0 0 2 2 2 2 NADH pyrophosphatase zinc ribbon domain zf-tcix PF14952.6 gi|212223384|ref|YP_002306620.1| - 0.00092 18.8 5.6 0.011 15.3 0.6 2.3 2 0 0 2 2 2 1 Putative treble-clef, zinc-finger, Zn-binding Prim_Zn_Ribbon PF08273.12 gi|212223384|ref|YP_002306620.1| - 0.0044 17.3 0.5 0.55 10.6 0.1 2.4 2 0 0 2 2 2 1 Zinc-binding domain of primase-helicase DUF35_N PF12172.8 gi|212223384|ref|YP_002306620.1| - 0.0047 16.8 3.9 0.0047 16.8 3.9 1.9 2 1 0 2 2 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) NRDD PF13597.6 gi|212223384|ref|YP_002306620.1| - 0.0096 14.7 0.8 0.01 14.6 0.8 1.0 1 0 0 1 1 1 1 Anaerobic ribonucleoside-triphosphate reductase zf-FPG_IleRS PF06827.14 gi|212223384|ref|YP_002306620.1| - 0.018 14.9 5.7 0.66 9.9 0.5 2.3 1 1 1 2 2 2 0 Zinc finger found in FPG and IleRS zf-nanos PF05741.13 gi|212223384|ref|YP_002306620.1| - 0.027 14.7 2.0 0.27 11.5 2.0 2.0 1 1 1 2 2 2 0 Nanos RNA binding domain zf-C4_Topoisom PF01396.19 gi|212223384|ref|YP_002306620.1| - 0.029 14.1 2.3 2.4 8.0 0.1 2.3 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger DZR PF12773.7 gi|212223384|ref|YP_002306620.1| - 0.052 13.6 3.1 0.094 12.8 3.1 1.5 1 1 0 1 1 1 0 Double zinc ribbon TF_Zn_Ribbon PF08271.12 gi|212223384|ref|YP_002306620.1| - 0.088 12.3 5.7 0.89 9.1 0.4 2.2 1 1 1 2 2 2 0 TFIIB zinc-binding CpXC PF14353.6 gi|212223384|ref|YP_002306620.1| - 0.1 12.7 2.9 0.72 9.9 0.1 2.1 1 1 1 2 2 2 0 CpXC protein zinc_ribbon_5 PF13719.6 gi|212223384|ref|YP_002306620.1| - 0.12 12.1 1.7 2 8.3 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|212223384|ref|YP_002306620.1| - 0.13 11.7 8.0 5.4 6.6 8.0 2.2 1 1 0 1 1 1 0 zinc-ribbon domain Cys_rich_CPCC PF14206.6 gi|212223384|ref|YP_002306620.1| - 0.14 12.0 3.6 0.51 10.2 3.8 1.6 1 1 1 2 2 2 0 Cysteine-rich CPCC zinc_ribbon_2 PF13240.6 gi|212223384|ref|YP_002306620.1| - 0.14 11.9 7.2 2.6 7.9 0.5 2.2 2 0 0 2 2 2 0 zinc-ribbon domain UPF0547 PF10571.9 gi|212223384|ref|YP_002306620.1| - 0.16 12.1 3.7 7.1 6.8 0.3 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zf-TFIIB PF13453.6 gi|212223384|ref|YP_002306620.1| - 0.22 10.9 3.6 2.9 7.3 0.3 2.3 1 1 1 2 2 2 0 Transcription factor zinc-finger zf-ISL3 PF14690.6 gi|212223384|ref|YP_002306620.1| - 0.22 12.2 7.2 1 10.1 1.0 2.3 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Zn-ribbon_8 PF09723.10 gi|212223384|ref|YP_002306620.1| - 0.29 11.3 6.4 22 5.3 6.4 2.3 1 1 0 1 1 1 0 Zinc ribbon domain Cys_rich_KTR PF14205.6 gi|212223384|ref|YP_002306620.1| - 0.58 10.0 5.0 0.71 9.7 0.7 2.3 1 1 1 2 2 2 0 Cysteine-rich KTR Zn_Tnp_IS1595 PF12760.7 gi|212223384|ref|YP_002306620.1| - 1.3 9.1 6.8 3 7.9 0.5 2.2 1 1 1 2 2 2 0 Transposase zinc-ribbon domain YacG PF03884.14 gi|212223384|ref|YP_002306620.1| - 1.4 8.7 6.2 2.4 7.9 0.7 2.1 1 1 1 2 2 2 0 DNA gyrase inhibitor YacG Zn-C2H2_12 PF18112.1 gi|212223384|ref|YP_002306620.1| - 2.4 8.7 5.2 11 6.6 0.4 2.3 2 0 0 2 2 2 0 Autophagy receptor zinc finger-C2H2 domain Rad50_zn_hook PF04423.14 gi|212223384|ref|YP_002306620.1| - 3.5 7.5 8.1 1.7 8.5 0.3 2.4 3 0 0 3 3 3 0 Rad50 zinc hook motif PAC2 PF09754.9 gi|212223385|ref|YP_002306621.1| - 3.1e-48 164.6 0.1 3.6e-48 164.4 0.1 1.0 1 0 0 1 1 1 1 PAC2 family CbiM PF01891.16 gi|212223386|ref|YP_002306622.1| - 2.1e-61 207.4 22.1 2.3e-61 207.2 22.1 1.0 1 0 0 1 1 1 1 Cobalt uptake substrate-specific transmembrane region PDGLE PF13190.6 gi|212223387|ref|YP_002306623.1| - 1.9e-06 27.6 2.2 9.7e-06 25.4 0.0 2.1 1 1 1 2 2 2 2 PDGLE domain CbiQ PF02361.16 gi|212223388|ref|YP_002306624.1| - 2.1e-28 99.4 7.9 2.6e-28 99.2 7.9 1.1 1 0 0 1 1 1 1 Cobalt transport protein ABC_tran PF00005.27 gi|212223389|ref|YP_002306625.1| - 1.1e-29 103.7 0.0 1.6e-29 103.1 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|212223389|ref|YP_002306625.1| - 2.5e-09 37.4 1.3 2.4e-05 24.3 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|212223389|ref|YP_002306625.1| - 4.3e-07 29.6 0.1 1.1e-05 25.0 0.1 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|212223389|ref|YP_002306625.1| - 0.00029 20.5 0.0 0.0043 16.8 0.1 2.2 2 0 0 2 2 2 1 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|212223389|ref|YP_002306625.1| - 0.00079 20.0 0.0 0.0029 18.2 0.0 1.8 2 0 0 2 2 2 1 AAA domain ATP_bind_1 PF03029.17 gi|212223389|ref|YP_002306625.1| - 0.0066 16.3 0.0 0.0099 15.7 0.0 1.2 1 0 0 1 1 1 1 Conserved hypothetical ATP binding protein NTPase_1 PF03266.15 gi|212223389|ref|YP_002306625.1| - 0.0086 16.0 0.2 1.4 8.8 0.1 2.2 1 1 0 2 2 2 1 NTPase BCA_ABC_TP_C PF12399.8 gi|212223389|ref|YP_002306625.1| - 0.0098 15.8 0.1 0.023 14.6 0.1 1.7 1 0 0 1 1 1 1 Branched-chain amino acid ATP-binding cassette transporter AAA_14 PF13173.6 gi|212223389|ref|YP_002306625.1| - 0.058 13.4 0.2 7.6 6.6 0.0 2.5 3 0 0 3 3 3 0 AAA domain SbcCD_C PF13558.6 gi|212223389|ref|YP_002306625.1| - 0.068 13.4 0.1 1.4 9.2 0.1 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit RsgA_GTPase PF03193.16 gi|212223389|ref|YP_002306625.1| - 0.073 13.0 0.1 0.11 12.4 0.1 1.3 1 0 0 1 1 1 0 RsgA GTPase Mg_chelatase PF01078.21 gi|212223389|ref|YP_002306625.1| - 0.088 12.2 0.1 0.16 11.3 0.1 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_16 PF13191.6 gi|212223389|ref|YP_002306625.1| - 0.11 12.9 0.0 0.2 12.0 0.0 1.6 1 1 0 1 1 1 0 AAA ATPase domain AAA_30 PF13604.6 gi|212223389|ref|YP_002306625.1| - 0.12 12.1 0.0 0.35 10.6 0.0 1.6 2 0 0 2 2 2 0 AAA domain AAA_22 PF13401.6 gi|212223389|ref|YP_002306625.1| - 0.14 12.4 0.0 0.49 10.7 0.0 2.0 1 1 0 1 1 1 0 AAA domain DLIC PF05783.11 gi|212223389|ref|YP_002306625.1| - 0.18 10.6 0.2 0.25 10.1 0.2 1.1 1 0 0 1 1 1 0 Dynein light intermediate chain (DLIC) PGM_PMM_I PF02878.16 gi|212223390|ref|YP_002306626.1| - 4.3e-47 159.3 0.0 9.3e-47 158.2 0.0 1.6 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.16 gi|212223390|ref|YP_002306626.1| - 3.2e-30 104.8 0.1 9e-30 103.3 0.1 1.8 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_III PF02880.16 gi|212223390|ref|YP_002306626.1| - 1.2e-27 96.4 0.0 2e-27 95.6 0.0 1.4 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_IV PF00408.20 gi|212223390|ref|YP_002306626.1| - 1.1e-13 51.1 0.1 4e-13 49.3 0.1 2.0 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain AP_endonuc_2 PF01261.24 gi|212223390|ref|YP_002306626.1| - 0.058 12.8 0.0 0.34 10.3 0.0 2.0 1 1 0 1 1 1 0 Xylose isomerase-like TIM barrel MannoseP_isomer PF01050.18 gi|212223391|ref|YP_002306627.1| - 7.6e-68 227.1 0.4 1.4e-67 226.3 0.4 1.4 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase NTP_transferase PF00483.23 gi|212223391|ref|YP_002306627.1| - 4e-61 206.7 0.0 5.8e-61 206.2 0.0 1.2 1 0 0 1 1 1 1 Nucleotidyl transferase Cupin_2 PF07883.11 gi|212223391|ref|YP_002306627.1| - 9.3e-13 47.7 0.1 2.5e-12 46.3 0.1 1.7 1 0 0 1 1 1 1 Cupin domain NTP_transf_3 PF12804.7 gi|212223391|ref|YP_002306627.1| - 1.9e-05 25.1 0.0 4e-05 24.0 0.0 1.5 1 0 0 1 1 1 1 MobA-like NTP transferase domain AraC_binding PF02311.19 gi|212223391|ref|YP_002306627.1| - 6.7e-05 22.8 0.0 0.00013 21.9 0.0 1.4 1 0 0 1 1 1 1 AraC-like ligand binding domain Cupin_3 PF05899.12 gi|212223391|ref|YP_002306627.1| - 0.0012 18.5 0.0 0.0026 17.4 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF861) Cupin_6 PF12852.7 gi|212223391|ref|YP_002306627.1| - 0.018 14.8 0.1 0.038 13.7 0.0 1.6 1 1 0 1 1 1 0 Cupin Cupin_1 PF00190.22 gi|212223391|ref|YP_002306627.1| - 0.13 11.9 0.0 0.24 11.0 0.0 1.3 1 0 0 1 1 1 0 Cupin ADP_PFK_GK PF04587.15 gi|212223392|ref|YP_002306628.1| - 8.3e-92 308.0 0.0 9.4e-92 307.8 0.0 1.0 1 0 0 1 1 1 1 ADP-specific Phosphofructokinase/Glucokinase conserved region HEAT_2 PF13646.6 gi|212223392|ref|YP_002306628.1| - 0.094 13.1 1.8 10 6.6 0.0 2.4 2 0 0 2 2 2 0 HEAT repeats GPI PF06560.11 gi|212223393|ref|YP_002306629.1| - 7.7e-42 142.6 0.1 8.8e-42 142.4 0.1 1.0 1 0 0 1 1 1 1 Glucose-6-phosphate isomerase (GPI) Cupin_2 PF07883.11 gi|212223393|ref|YP_002306629.1| - 1.2e-09 37.7 0.0 2.6e-09 36.6 0.0 1.6 1 0 0 1 1 1 1 Cupin domain Cupin_1 PF00190.22 gi|212223393|ref|YP_002306629.1| - 1.3e-06 28.1 0.0 2.1e-06 27.4 0.0 1.3 1 0 0 1 1 1 1 Cupin DUF3368 PF11848.8 gi|212223393|ref|YP_002306629.1| - 0.0021 17.8 0.0 0.0033 17.2 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF3368) Cupin_3 PF05899.12 gi|212223393|ref|YP_002306629.1| - 0.0084 15.8 0.6 0.013 15.2 0.0 1.6 2 0 0 2 2 2 1 Protein of unknown function (DUF861) DMSP_lyase PF16867.5 gi|212223393|ref|YP_002306629.1| - 0.022 14.4 0.0 0.033 13.8 0.0 1.2 1 0 0 1 1 1 0 Dimethlysulfonioproprionate lyase JmjC PF02373.22 gi|212223393|ref|YP_002306629.1| - 0.14 12.6 0.1 0.29 11.6 0.1 1.4 1 0 0 1 1 1 0 JmjC domain, hydroxylase Peptidase_M50 PF02163.22 gi|212223394|ref|YP_002306630.1| - 4.1e-08 32.8 9.4 1.3e-05 24.6 2.4 3.1 2 1 1 3 3 3 3 Peptidase family M50 BCLP PF12304.8 gi|212223394|ref|YP_002306630.1| - 0.017 14.7 0.7 0.026 14.1 0.7 1.4 1 0 0 1 1 1 0 Beta-casein like protein KH_2 PF07650.17 gi|212223395|ref|YP_002306631.1| - 1.7e-05 24.6 1.7 1.7e-05 24.5 1.7 1.1 1 0 0 1 1 1 1 KH domain Glyco_H_20C_C PF18088.1 gi|212223395|ref|YP_002306631.1| - 0.13 12.1 0.1 0.15 11.9 0.1 1.1 1 0 0 1 1 1 0 Glycoside Hydrolase 20C C-terminal domain Lar_restr_allev PF14354.6 gi|212223396|ref|YP_002306632.1| - 1.8e-06 28.2 0.2 2e-06 28.1 0.2 1.1 1 0 0 1 1 1 1 Restriction alleviation protein Lar TF_Zn_Ribbon PF08271.12 gi|212223396|ref|YP_002306632.1| - 0.00012 21.5 0.2 0.33 10.5 0.0 2.2 2 0 0 2 2 2 2 TFIIB zinc-binding zinc_ribbon_13 PF09855.9 gi|212223396|ref|YP_002306632.1| - 0.00023 21.3 1.5 0.00078 19.6 1.5 1.8 1 1 0 1 1 1 1 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) zf-RRN7 PF11781.8 gi|212223396|ref|YP_002306632.1| - 0.0023 17.6 1.2 0.034 13.8 0.0 2.2 2 0 0 2 2 2 1 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 Prim_Zn_Ribbon PF08273.12 gi|212223396|ref|YP_002306632.1| - 0.0024 18.1 1.0 0.02 15.2 0.1 2.1 2 0 0 2 2 2 1 Zinc-binding domain of primase-helicase UPF0547 PF10571.9 gi|212223396|ref|YP_002306632.1| - 0.02 15.0 1.0 4.5 7.4 0.0 2.3 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zf-piccolo PF05715.13 gi|212223396|ref|YP_002306632.1| - 0.027 14.6 0.1 0.035 14.2 0.1 1.2 1 0 0 1 1 1 0 Piccolo Zn-finger Ribosomal_L32p PF01783.23 gi|212223396|ref|YP_002306632.1| - 0.035 14.4 0.4 0.24 11.7 0.0 2.0 2 0 0 2 2 2 0 Ribosomal L32p protein family Ribosomal_L37e PF01907.19 gi|212223396|ref|YP_002306632.1| - 0.046 13.9 1.4 1.2 9.4 1.4 2.1 1 1 0 1 1 1 0 Ribosomal protein L37e zf-Sec23_Sec24 PF04810.15 gi|212223396|ref|YP_002306632.1| - 0.046 13.8 0.2 7.7 6.7 0.0 2.3 2 0 0 2 2 2 0 Sec23/Sec24 zinc finger HypA PF01155.19 gi|212223396|ref|YP_002306632.1| - 0.046 13.7 0.9 0.55 10.3 0.1 2.0 1 1 1 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA FUR PF01475.19 gi|212223396|ref|YP_002306632.1| - 0.057 13.6 1.9 3 8.0 0.2 2.0 1 1 1 2 2 2 0 Ferric uptake regulator family DNA_RNApol_7kD PF03604.13 gi|212223396|ref|YP_002306632.1| - 0.058 13.1 4.2 0.067 12.9 0.7 2.1 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit zf-ribbon_3 PF13248.6 gi|212223396|ref|YP_002306632.1| - 0.086 12.3 3.8 0.72 9.3 0.3 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Herpes_UL49_1 PF03117.14 gi|212223396|ref|YP_002306632.1| - 0.12 11.6 0.7 0.21 10.8 0.7 1.4 1 1 0 1 1 1 0 UL49 family zinc_ribbon_4 PF13717.6 gi|212223396|ref|YP_002306632.1| - 0.14 12.2 2.8 15 5.6 3.0 2.6 1 1 1 2 2 2 0 zinc-ribbon domain Rubredoxin_2 PF18073.1 gi|212223396|ref|YP_002306632.1| - 0.68 9.7 3.5 1.8 8.4 0.1 2.5 3 0 0 3 3 3 0 Rubredoxin metal binding domain TraB PF01963.17 gi|212223397|ref|YP_002306633.1| - 2.4e-17 63.7 0.2 1.7e-15 57.6 0.2 2.0 1 1 0 1 1 1 1 TraB family Lactamase_B_2 PF12706.7 gi|212223398|ref|YP_002306634.1| - 2.1e-19 69.9 0.0 1e-08 34.9 0.0 2.1 2 0 0 2 2 2 2 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|212223398|ref|YP_002306634.1| - 5.5e-10 39.6 0.1 1.6e-08 34.8 0.0 2.1 2 0 0 2 2 2 1 Metallo-beta-lactamase superfamily Lactamase_B_4 PF13691.6 gi|212223398|ref|YP_002306634.1| - 8.7e-07 28.5 0.0 1.7e-06 27.6 0.0 1.4 1 0 0 1 1 1 1 tRNase Z endonuclease PDEase_II PF02112.15 gi|212223398|ref|YP_002306634.1| - 0.13 11.3 0.0 0.19 10.8 0.0 1.1 1 0 0 1 1 1 0 cAMP phosphodiesterases class-II TPR_12 PF13424.6 gi|212223399|ref|YP_002306635.1| - 1.4e-09 38.1 4.7 1.4e-09 38.1 4.7 3.2 3 0 0 3 3 3 1 Tetratricopeptide repeat TPR_1 PF00515.28 gi|212223399|ref|YP_002306635.1| - 3.7e-06 26.5 17.0 3e-05 23.6 2.4 4.2 4 0 0 4 4 4 2 Tetratricopeptide repeat RPN7 PF10602.9 gi|212223399|ref|YP_002306635.1| - 7.3e-06 25.8 1.2 7.3e-06 25.8 1.2 1.9 2 0 0 2 2 2 1 26S proteasome subunit RPN7 TPR_7 PF13176.6 gi|212223399|ref|YP_002306635.1| - 1.1e-05 25.1 11.6 0.00047 20.0 0.4 4.0 4 0 0 4 4 3 2 Tetratricopeptide repeat TPR_2 PF07719.17 gi|212223399|ref|YP_002306635.1| - 5.5e-05 23.0 9.9 0.00045 20.1 2.2 5.1 6 0 0 6 6 6 2 Tetratricopeptide repeat TPR_6 PF13174.6 gi|212223399|ref|YP_002306635.1| - 9.9e-05 22.7 13.5 0.018 15.7 0.3 4.7 5 0 0 5 5 4 2 Tetratricopeptide repeat TPR_MalT PF17874.1 gi|212223399|ref|YP_002306635.1| - 0.0014 18.1 1.5 0.0024 17.3 1.5 1.5 1 0 0 1 1 1 1 MalT-like TPR region TPR_8 PF13181.6 gi|212223399|ref|YP_002306635.1| - 0.0018 18.4 2.4 0.0018 18.4 2.4 4.9 5 1 0 5 5 4 2 Tetratricopeptide repeat SNAP PF14938.6 gi|212223399|ref|YP_002306635.1| - 0.0065 15.9 3.6 0.0065 15.9 3.6 2.5 1 1 1 2 2 2 1 Soluble NSF attachment protein, SNAP TPR_10 PF13374.6 gi|212223399|ref|YP_002306635.1| - 0.0092 15.8 0.4 0.0092 15.8 0.4 4.3 6 0 0 6 6 4 1 Tetratricopeptide repeat TPR_17 PF13431.6 gi|212223399|ref|YP_002306635.1| - 0.011 16.0 2.0 1.7 9.2 0.1 3.7 3 0 0 3 3 2 0 Tetratricopeptide repeat TPR_14 PF13428.6 gi|212223399|ref|YP_002306635.1| - 0.023 15.5 11.6 16 6.6 0.1 5.2 4 2 1 5 5 4 0 Tetratricopeptide repeat Rogdi_lz PF10259.9 gi|212223399|ref|YP_002306635.1| - 0.053 13.0 0.0 0.55 9.6 0.0 2.1 2 0 0 2 2 2 0 Rogdi leucine zipper containing protein TPR_19 PF14559.6 gi|212223399|ref|YP_002306635.1| - 0.072 13.6 14.9 0.54 10.8 0.5 4.8 2 1 3 5 5 5 0 Tetratricopeptide repeat DUF2225 PF09986.9 gi|212223399|ref|YP_002306635.1| - 0.16 11.7 9.4 0.12 12.1 2.1 2.8 1 1 1 3 3 3 0 Uncharacterized protein conserved in bacteria (DUF2225) TPR_20 PF14561.6 gi|212223399|ref|YP_002306635.1| - 0.18 12.2 5.3 0.39 11.1 0.1 3.5 3 1 1 4 4 4 0 Tetratricopeptide repeat TPR_16 PF13432.6 gi|212223399|ref|YP_002306635.1| - 0.19 12.4 0.3 0.19 12.4 0.3 3.4 3 1 1 4 4 3 0 Tetratricopeptide repeat HisKA_2 PF07568.12 gi|212223399|ref|YP_002306635.1| - 0.31 11.1 1.7 22 5.2 0.0 3.5 3 1 0 3 3 3 0 Histidine kinase TPR_11 PF13414.6 gi|212223399|ref|YP_002306635.1| - 0.35 10.6 11.3 1.9 8.2 0.1 4.3 5 0 0 5 5 5 0 TPR repeat SHNi-TPR PF10516.9 gi|212223399|ref|YP_002306635.1| - 6.9 6.2 16.6 4.6 6.8 0.4 4.0 4 0 0 4 4 4 0 SHNi-TPR Cytochrom_C_2 PF01322.20 gi|212223399|ref|YP_002306635.1| - 9.7 7.1 7.2 1.3 9.9 0.1 2.8 4 0 0 4 4 3 0 Cytochrome C' ABC_tran PF00005.27 gi|212223400|ref|YP_002306636.1| - 1.5e-27 96.8 0.0 2.1e-27 96.3 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|212223400|ref|YP_002306636.1| - 2.7e-08 34.0 0.0 2.4e-05 24.3 0.0 2.2 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 gi|212223400|ref|YP_002306636.1| - 3.2e-06 27.8 0.0 5e-06 27.2 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_27 PF13514.6 gi|212223400|ref|YP_002306636.1| - 5.1e-05 23.0 0.0 8.6e-05 22.2 0.0 1.3 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|212223400|ref|YP_002306636.1| - 8.2e-05 22.1 0.1 0.02 14.4 0.0 2.3 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|212223400|ref|YP_002306636.1| - 0.00018 21.2 0.0 0.00031 20.4 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|212223400|ref|YP_002306636.1| - 0.00065 20.0 0.2 0.0093 16.2 0.2 2.1 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|212223400|ref|YP_002306636.1| - 0.0018 18.7 0.0 0.0025 18.2 0.0 1.3 1 1 0 1 1 1 1 AAA ATPase domain AAA_28 PF13521.6 gi|212223400|ref|YP_002306636.1| - 0.0035 17.6 0.0 0.017 15.4 0.0 2.0 2 0 0 2 2 2 1 AAA domain RsgA_GTPase PF03193.16 gi|212223400|ref|YP_002306636.1| - 0.0056 16.6 0.0 0.011 15.6 0.0 1.5 1 0 0 1 1 1 1 RsgA GTPase AAA_30 PF13604.6 gi|212223400|ref|YP_002306636.1| - 0.013 15.3 0.0 0.016 15.0 0.0 1.4 1 1 0 1 1 1 0 AAA domain AAA_15 PF13175.6 gi|212223400|ref|YP_002306636.1| - 0.014 15.1 0.0 0.087 12.5 0.0 1.9 2 0 0 2 2 2 0 AAA ATPase domain ATPase_2 PF01637.18 gi|212223400|ref|YP_002306636.1| - 0.024 14.5 0.0 0.041 13.8 0.0 1.3 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea SbcCD_C PF13558.6 gi|212223400|ref|YP_002306636.1| - 0.032 14.5 0.1 0.43 10.8 0.1 2.3 2 1 0 2 2 1 0 Putative exonuclease SbcCD, C subunit AAA_5 PF07728.14 gi|212223400|ref|YP_002306636.1| - 0.037 14.0 0.0 1.2 9.1 0.0 2.3 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) NACHT PF05729.12 gi|212223400|ref|YP_002306636.1| - 0.047 13.6 0.0 0.082 12.8 0.0 1.4 1 0 0 1 1 1 0 NACHT domain NTPase_1 PF03266.15 gi|212223400|ref|YP_002306636.1| - 0.053 13.4 0.2 0.29 11.0 0.0 2.0 2 1 0 2 2 2 0 NTPase AAA_25 PF13481.6 gi|212223400|ref|YP_002306636.1| - 0.055 13.0 0.0 0.098 12.2 0.0 1.6 1 1 0 1 1 1 0 AAA domain Thymidylate_kin PF02223.17 gi|212223400|ref|YP_002306636.1| - 0.09 12.4 0.0 0.15 11.8 0.0 1.4 1 0 0 1 1 1 0 Thymidylate kinase AAA PF00004.29 gi|212223400|ref|YP_002306636.1| - 0.13 12.6 0.0 0.69 10.3 0.0 2.0 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) T2SSE PF00437.20 gi|212223400|ref|YP_002306636.1| - 0.15 11.1 0.0 0.24 10.4 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein MutS_V PF00488.21 gi|212223400|ref|YP_002306636.1| - 0.15 12.0 0.0 0.36 10.8 0.0 1.6 1 0 0 1 1 1 0 MutS domain V ABC_ATPase PF09818.9 gi|212223400|ref|YP_002306636.1| - 0.18 10.6 0.1 1.3 7.7 0.0 2.1 2 1 0 2 2 2 0 Predicted ATPase of the ABC class AAA_33 PF13671.6 gi|212223400|ref|YP_002306636.1| - 0.18 12.0 0.0 0.23 11.6 0.0 1.4 1 1 0 1 1 1 0 AAA domain Rad17 PF03215.15 gi|212223400|ref|YP_002306636.1| - 0.2 11.6 0.0 0.39 10.6 0.0 1.4 1 0 0 1 1 1 0 Rad17 P-loop domain FecCD PF01032.18 gi|212223401|ref|YP_002306637.1| - 1e-95 320.3 37.7 1.3e-95 320.0 37.7 1.0 1 0 0 1 1 1 1 FecCD transport family ABC-3 PF00950.17 gi|212223401|ref|YP_002306637.1| - 0.00048 19.7 21.7 0.00087 18.9 21.7 1.4 1 0 0 1 1 1 1 ABC 3 transport family Peripla_BP_2 PF01497.18 gi|212223402|ref|YP_002306638.1| - 1.9e-27 96.3 0.0 2.9e-27 95.8 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding protein DUF2201 PF09967.9 gi|212223402|ref|YP_002306638.1| - 0.086 13.0 0.6 2 8.6 0.1 2.4 2 0 0 2 2 2 0 VWA-like domain (DUF2201) FmdE PF02663.14 gi|212223403|ref|YP_002306639.1| - 1.7e-34 118.7 0.0 2.3e-34 118.3 0.0 1.2 1 0 0 1 1 1 1 FmdE, Molybdenum formylmethanofuran dehydrogenase operon zf-dskA_traR PF01258.17 gi|212223403|ref|YP_002306639.1| - 4.4e-07 29.7 1.1 7.8e-07 28.9 1.1 1.4 1 0 0 1 1 1 1 Prokaryotic dksA/traR C4-type zinc finger Hexapep_2 PF14602.6 gi|212223403|ref|YP_002306639.1| - 0.085 12.6 0.3 0.2 11.4 0.3 1.5 1 0 0 1 1 1 0 Hexapeptide repeat of succinyl-transferase Zn_Tnp_IS1595 PF12760.7 gi|212223403|ref|YP_002306639.1| - 1 9.4 4.3 49 4.0 0.1 3.3 2 1 1 3 3 3 0 Transposase zinc-ribbon domain Nitro_FeMo-Co PF02579.17 gi|212223404|ref|YP_002306640.1| - 2.2e-20 72.8 0.1 2.5e-20 72.6 0.1 1.1 1 0 0 1 1 1 1 Dinitrogenase iron-molybdenum cofactor SLAC1 PF03595.17 gi|212223405|ref|YP_002306641.1| - 3.1e-69 233.7 52.4 3.5e-69 233.6 52.4 1.0 1 0 0 1 1 1 1 Voltage-dependent anion channel Cation_efflux PF01545.21 gi|212223406|ref|YP_002306642.1| - 1.7e-51 174.8 13.4 2.1e-51 174.5 13.4 1.1 1 0 0 1 1 1 1 Cation efflux family ZT_dimer PF16916.5 gi|212223406|ref|YP_002306642.1| - 3.7e-11 43.0 0.8 7.6e-11 42.0 0.8 1.5 1 0 0 1 1 1 1 Dimerisation domain of Zinc Transporter HisKA_7TM PF16927.5 gi|212223406|ref|YP_002306642.1| - 0.053 13.5 2.4 0.058 13.4 1.9 1.3 1 1 0 1 1 1 0 N-terminal 7TM region of histidine kinase CD20 PF04103.15 gi|212223406|ref|YP_002306642.1| - 0.078 13.1 0.2 0.078 13.1 0.2 2.6 3 0 0 3 3 3 0 CD20-like family MARVEL PF01284.23 gi|212223406|ref|YP_002306642.1| - 0.62 10.1 4.0 0.54 10.3 1.2 2.1 1 1 1 2 2 2 0 Membrane-associating domain HypA PF01155.19 gi|212223407|ref|YP_002306643.1| - 6.7e-27 93.7 0.1 7.7e-27 93.5 0.1 1.0 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA PhnA_Zn_Ribbon PF08274.12 gi|212223407|ref|YP_002306643.1| - 0.00036 20.4 0.6 0.11 12.5 0.1 2.5 2 0 0 2 2 2 1 PhnA Zinc-Ribbon Zn_Tnp_IS1595 PF12760.7 gi|212223407|ref|YP_002306643.1| - 0.00071 19.5 0.3 0.49 10.4 0.1 2.3 2 0 0 2 2 2 2 Transposase zinc-ribbon domain TFIIS_C PF01096.18 gi|212223407|ref|YP_002306643.1| - 0.00076 19.3 2.3 0.16 11.9 0.5 2.2 2 0 0 2 2 2 2 Transcription factor S-II (TFIIS) UPF0547 PF10571.9 gi|212223407|ref|YP_002306643.1| - 0.0011 19.0 2.7 0.044 13.9 0.2 2.3 2 0 0 2 2 2 1 Uncharacterised protein family UPF0547 DNA_RNApol_7kD PF03604.13 gi|212223407|ref|YP_002306643.1| - 0.0014 18.2 0.5 0.12 12.1 0.1 2.3 2 0 0 2 2 2 1 DNA directed RNA polymerase, 7 kDa subunit Lar_restr_allev PF14354.6 gi|212223407|ref|YP_002306643.1| - 0.0021 18.4 0.1 0.67 10.4 0.0 2.2 2 0 0 2 2 2 1 Restriction alleviation protein Lar zinc_ribbon_2 PF13240.6 gi|212223407|ref|YP_002306643.1| - 0.0061 16.2 1.0 3.1 7.6 0.0 2.4 2 0 0 2 2 2 2 zinc-ribbon domain TF_Zn_Ribbon PF08271.12 gi|212223407|ref|YP_002306643.1| - 0.01 15.3 0.2 0.47 10.0 0.0 2.3 2 0 0 2 2 2 0 TFIIB zinc-binding zf-ZPR1 PF03367.13 gi|212223407|ref|YP_002306643.1| - 0.023 14.5 1.5 0.12 12.2 0.9 2.2 2 1 0 2 2 2 0 ZPR1 zinc-finger domain Trm112p PF03966.16 gi|212223407|ref|YP_002306643.1| - 0.024 15.2 0.0 3.3 8.4 0.0 2.3 2 1 0 2 2 2 0 Trm112p-like protein Zn-ribbon_8 PF09723.10 gi|212223407|ref|YP_002306643.1| - 0.029 14.5 5.1 0.54 10.4 5.0 2.3 1 1 0 1 1 1 0 Zinc ribbon domain eIF-5_eIF-2B PF01873.17 gi|212223407|ref|YP_002306643.1| - 0.038 13.9 0.3 1.7 8.5 0.0 2.4 2 1 1 3 3 3 0 Domain found in IF2B/IF5 zf-3CxxC PF13695.6 gi|212223407|ref|YP_002306643.1| - 0.052 14.0 0.1 0.098 13.1 0.1 1.4 1 0 0 1 1 1 0 Zinc-binding domain MCM_OB PF17207.3 gi|212223407|ref|YP_002306643.1| - 0.068 13.0 0.0 0.092 12.6 0.0 1.3 1 0 0 1 1 1 0 MCM OB domain DUF2318 PF10080.9 gi|212223407|ref|YP_002306643.1| - 0.076 13.1 0.1 2.6 8.2 0.0 2.3 2 0 0 2 2 2 0 Predicted membrane protein (DUF2318) OrfB_Zn_ribbon PF07282.11 gi|212223407|ref|YP_002306643.1| - 0.15 12.0 0.4 9.6 6.2 0.1 2.3 2 0 0 2 2 2 0 Putative transposase DNA-binding domain TackOD1 PF18551.1 gi|212223407|ref|YP_002306643.1| - 0.15 11.7 0.7 15 5.2 0.1 2.2 1 1 0 2 2 2 0 Thaumarchaeal output domain 1 DUF35_N PF12172.8 gi|212223407|ref|YP_002306643.1| - 0.16 11.9 5.3 0.52 10.2 0.2 2.3 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zinc_ribbon_4 PF13717.6 gi|212223407|ref|YP_002306643.1| - 0.19 11.6 1.8 5.9 6.9 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|212223407|ref|YP_002306643.1| - 0.23 10.9 1.9 3 7.4 0.2 2.2 2 0 0 2 2 2 0 zinc-ribbon domain DUF4379 PF14311.6 gi|212223407|ref|YP_002306643.1| - 0.68 10.3 5.0 3.6 8.0 5.1 2.0 1 1 1 2 2 2 0 Probable Zinc-ribbon domain ParA PF10609.9 gi|212223408|ref|YP_002306644.1| - 7.6e-59 199.1 0.0 8.6e-59 199.0 0.0 1.0 1 0 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase CbiA PF01656.23 gi|212223408|ref|YP_002306644.1| - 5.4e-16 58.8 0.0 7.6e-16 58.3 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|212223408|ref|YP_002306644.1| - 1.6e-11 44.4 0.0 2.5e-07 30.8 0.0 2.3 2 0 0 2 2 2 2 AAA domain ArsA_ATPase PF02374.15 gi|212223408|ref|YP_002306644.1| - 1.7e-07 30.7 4.0 1.2e-05 24.6 0.4 3.0 2 1 0 2 2 2 2 Anion-transporting ATPase MipZ PF09140.11 gi|212223408|ref|YP_002306644.1| - 9.8e-06 25.0 0.0 1.8e-05 24.2 0.0 1.5 1 1 0 1 1 1 1 ATPase MipZ Fer4_NifH PF00142.18 gi|212223408|ref|YP_002306644.1| - 4.4e-05 23.1 0.0 0.011 15.3 0.0 2.2 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA_26 PF13500.6 gi|212223408|ref|YP_002306644.1| - 0.00038 20.3 0.7 0.79 9.5 0.0 2.1 2 0 0 2 2 2 2 AAA domain APS_kinase PF01583.20 gi|212223408|ref|YP_002306644.1| - 0.041 13.8 0.0 0.36 10.7 0.0 2.2 2 0 0 2 2 2 0 Adenylylsulphate kinase MeaB PF03308.16 gi|212223408|ref|YP_002306644.1| - 0.059 12.3 0.1 0.085 11.8 0.1 1.2 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB RsgA_GTPase PF03193.16 gi|212223408|ref|YP_002306644.1| - 0.11 12.4 0.3 7.8 6.4 0.1 2.1 2 0 0 2 2 2 0 RsgA GTPase CLP1_P PF16575.5 gi|212223408|ref|YP_002306644.1| - 0.23 11.3 0.1 0.41 10.4 0.1 1.4 1 0 0 1 1 1 0 mRNA cleavage and polyadenylation factor CLP1 P-loop HycI PF01750.18 gi|212223409|ref|YP_002306645.1| - 9.8e-16 57.8 0.0 1.9e-15 56.8 0.0 1.5 2 0 0 2 2 2 1 Hydrogenase maturation protease NTP_transf_3 PF12804.7 gi|212223410|ref|YP_002306646.1| - 8.9e-32 110.7 0.0 1.1e-31 110.4 0.0 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.19 gi|212223410|ref|YP_002306646.1| - 5.7e-06 26.2 0.0 6.6e-06 26.0 0.0 1.2 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CTP_transf_3 PF02348.19 gi|212223410|ref|YP_002306646.1| - 0.011 15.7 0.0 0.2 11.5 0.0 2.1 2 0 0 2 2 2 0 Cytidylyltransferase Proton_antipo_M PF00361.20 gi|212223412|ref|YP_002306648.1| - 2.2e-60 204.4 26.5 2.2e-60 204.4 26.5 1.9 3 0 0 3 3 3 1 Proton-conducting membrane transporter Proton_antipo_N PF00662.20 gi|212223412|ref|YP_002306648.1| - 0.0003 20.8 5.8 0.00061 19.8 0.4 3.1 2 0 0 2 2 2 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus MNHE PF01899.16 gi|212223413|ref|YP_002306649.1| - 2.7e-36 124.5 0.5 3e-36 124.4 0.5 1.0 1 0 0 1 1 1 1 Na+/H+ ion antiporter subunit HXXEE PF13787.6 gi|212223413|ref|YP_002306649.1| - 0.022 15.5 1.9 0.072 13.9 1.9 1.9 1 1 0 1 1 1 0 Protein of unknown function with HXXEE motif Oxidored_q2 PF00420.24 gi|212223414|ref|YP_002306650.1| - 4.6e-24 84.1 4.0 5.8e-24 83.7 4.0 1.0 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L DUF3561 PF12084.8 gi|212223414|ref|YP_002306650.1| - 1.5 8.9 7.2 7.8 6.6 0.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3561) MnhB PF04039.13 gi|212223415|ref|YP_002306651.1| - 6.4e-21 74.9 10.0 6.4e-21 74.9 10.0 2.1 2 1 0 2 2 2 1 Domain related to MnhB subunit of Na+/H+ antiporter DUF2106 PF09879.9 gi|212223415|ref|YP_002306651.1| - 0.0034 16.9 0.1 0.0086 15.6 0.1 1.7 1 0 0 1 1 1 1 Predicted membrane protein (DUF2106) E1-E2_ATPase PF00122.20 gi|212223415|ref|YP_002306651.1| - 0.13 11.8 1.4 0.18 11.3 0.0 2.0 2 0 0 2 2 2 0 E1-E2 ATPase NrsF PF06532.11 gi|212223415|ref|YP_002306651.1| - 0.77 9.4 6.8 0.17 11.6 2.7 2.1 2 1 0 2 2 2 0 Negative regulator of sigma F DUF4040 PF13244.6 gi|212223416|ref|YP_002306652.1| - 6.3e-14 51.9 6.4 6.3e-14 51.9 6.4 1.3 1 1 0 1 1 1 1 Domain of unknown function (DUF4040) Proton_antipo_M PF00361.20 gi|212223416|ref|YP_002306652.1| - 0.03 13.5 7.5 0.033 13.4 7.5 1.1 1 0 0 1 1 1 0 Proton-conducting membrane transporter DUF2070 PF09843.9 gi|212223416|ref|YP_002306652.1| - 0.1 10.9 10.5 0.11 10.7 10.5 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) FtsX PF02687.21 gi|212223416|ref|YP_002306652.1| - 0.25 11.8 7.8 0.35 11.4 7.8 1.3 1 0 0 1 1 1 0 FtsX-like permease family PhaG_MnhG_YufB PF03334.14 gi|212223417|ref|YP_002306653.1| - 4.3e-16 58.9 11.3 5.6e-16 58.6 11.3 1.2 1 0 0 1 1 1 1 Na+/H+ antiporter subunit Rpn9_C PF18261.1 gi|212223417|ref|YP_002306653.1| - 0.2 11.3 0.1 0.31 10.7 0.1 1.2 1 0 0 1 1 1 0 Rpn9 C-terminal helix MrpF_PhaF PF04066.13 gi|212223418|ref|YP_002306654.1| - 3.1e-10 40.3 9.1 3.1e-10 40.3 9.1 1.9 2 0 0 2 2 2 1 Multiple resistance and pH regulation protein F (MrpF / PhaF) RRF PF01765.19 gi|212223419|ref|YP_002306655.1| - 0.053 13.5 0.0 0.064 13.2 0.0 1.2 1 0 0 1 1 1 0 Ribosome recycling factor Oxidored_q6 PF01058.22 gi|212223420|ref|YP_002306656.1| - 7.4e-25 87.3 0.0 1.1e-24 86.7 0.0 1.3 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit Fer4 PF00037.27 gi|212223421|ref|YP_002306657.1| - 4.7e-15 54.7 13.3 8.3e-09 34.9 3.5 3.3 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|212223421|ref|YP_002306657.1| - 1.3e-13 51.3 9.2 1.3e-13 51.3 9.2 2.6 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|212223421|ref|YP_002306657.1| - 5.2e-13 48.9 36.3 4e-09 36.5 10.4 2.8 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|212223421|ref|YP_002306657.1| - 1.2e-11 44.2 15.3 9.2e-08 31.9 4.0 3.6 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|212223421|ref|YP_002306657.1| - 3.1e-11 43.2 18.6 1.6e-07 31.3 3.6 2.7 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|212223421|ref|YP_002306657.1| - 9.2e-10 39.3 13.8 0.0001 23.1 7.5 3.0 2 1 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_21 PF14697.6 gi|212223421|ref|YP_002306657.1| - 2.4e-09 37.2 7.5 2.4e-09 37.2 7.5 1.9 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|212223421|ref|YP_002306657.1| - 6.8e-09 35.3 25.5 1.8e-05 24.5 3.9 3.8 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_8 PF13183.6 gi|212223421|ref|YP_002306657.1| - 9.2e-07 29.2 12.1 0.0088 16.5 6.9 2.8 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|212223421|ref|YP_002306657.1| - 2.2e-06 27.7 22.8 0.00011 22.5 1.0 3.9 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|212223421|ref|YP_002306657.1| - 2.4e-06 28.0 17.5 0.01 16.4 1.5 3.2 2 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|212223421|ref|YP_002306657.1| - 3.6e-05 24.4 20.0 0.00097 19.9 6.7 3.0 4 0 0 4 4 2 2 4Fe-4S binding domain Fer4_15 PF13459.6 gi|212223421|ref|YP_002306657.1| - 0.00026 21.6 8.8 0.016 15.9 1.1 2.6 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_13 PF13370.6 gi|212223421|ref|YP_002306657.1| - 0.0028 18.2 15.0 0.15 12.6 3.5 2.8 2 1 0 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_18 PF13746.6 gi|212223421|ref|YP_002306657.1| - 0.0045 17.2 11.7 0.0072 16.5 1.8 2.4 1 1 1 2 2 2 1 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|212223421|ref|YP_002306657.1| - 0.0089 16.9 13.8 0.079 13.8 0.4 3.0 2 1 1 3 3 3 2 4Fe-4S dicluster domain Lar_restr_allev PF14354.6 gi|212223421|ref|YP_002306657.1| - 0.028 14.8 7.9 0.05 14.0 0.2 2.9 2 1 0 2 2 2 0 Restriction alleviation protein Lar YokU PF14122.6 gi|212223421|ref|YP_002306657.1| - 0.26 11.3 4.5 0.33 11.0 0.8 2.5 1 1 2 3 3 3 0 YokU-like protein, putative antitoxin ETF_QO PF05187.13 gi|212223421|ref|YP_002306657.1| - 0.38 10.9 5.1 0.22 11.7 2.1 2.2 1 1 2 3 3 3 0 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S NapB PF03892.14 gi|212223421|ref|YP_002306657.1| - 0.65 10.0 3.2 2 8.4 1.1 2.2 1 1 0 2 2 2 0 Nitrate reductase cytochrome c-type subunit (NapB) Complex1_49kDa PF00346.19 gi|212223422|ref|YP_002306658.1| - 7.6e-66 222.0 0.3 5.5e-46 156.9 0.2 2.5 2 1 1 3 3 3 2 Respiratory-chain NADH dehydrogenase, 49 Kd subunit Complex1_30kDa PF00329.19 gi|212223422|ref|YP_002306658.1| - 1e-24 87.5 0.0 4.3e-24 85.5 0.0 2.0 2 0 0 2 2 2 1 Respiratory-chain NADH dehydrogenase, 30 Kd subunit NiFeSe_Hases PF00374.19 gi|212223422|ref|YP_002306658.1| - 5.3e-17 61.9 4.3 6.3e-14 51.8 0.2 2.6 3 1 0 3 3 3 2 Nickel-dependent hydrogenase NADHdh PF00146.21 gi|212223423|ref|YP_002306659.1| - 4.3e-42 144.4 23.9 5.3e-42 144.2 23.9 1.0 1 0 0 1 1 1 1 NADH dehydrogenase Proton_antipo_M PF00361.20 gi|212223424|ref|YP_002306660.1| - 5e-52 176.9 29.3 5e-52 176.9 29.3 2.5 2 0 0 2 2 2 1 Proton-conducting membrane transporter Proton_antipo_N PF00662.20 gi|212223424|ref|YP_002306660.1| - 1e-06 28.7 0.5 1e-06 28.7 0.5 3.1 2 0 0 2 2 2 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Proton_antipo_M PF00361.20 gi|212223425|ref|YP_002306661.1| - 1e-51 175.9 22.3 1e-51 175.9 22.3 2.9 3 1 0 3 3 3 2 Proton-conducting membrane transporter Proton_antipo_N PF00662.20 gi|212223425|ref|YP_002306661.1| - 1.2e-05 25.3 0.5 1.2e-05 25.3 0.5 3.0 3 1 0 3 3 3 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Fer4_11 PF13247.6 gi|212223426|ref|YP_002306662.1| - 2.7e-26 91.6 9.2 2.7e-26 91.6 9.2 1.6 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|212223426|ref|YP_002306662.1| - 1.1e-12 47.1 38.7 1.9e-05 24.2 2.2 5.6 6 0 0 6 6 6 4 4Fe-4S binding domain Fer4_7 PF12838.7 gi|212223426|ref|YP_002306662.1| - 6.9e-12 45.8 28.2 5.4e-06 26.9 12.5 3.3 2 1 2 4 4 4 4 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|212223426|ref|YP_002306662.1| - 2.6e-10 39.7 29.7 0.0028 17.6 0.9 4.3 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_10 PF13237.6 gi|212223426|ref|YP_002306662.1| - 5.6e-10 39.2 29.2 1.1e-05 25.5 8.5 3.2 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|212223426|ref|YP_002306662.1| - 2.6e-09 37.1 28.1 3.3e-05 24.0 8.0 2.7 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|212223426|ref|YP_002306662.1| - 8.3e-08 32.0 37.5 0.02 15.0 2.0 5.1 4 1 0 4 4 4 3 4Fe-4S binding domain Fer4_16 PF13484.6 gi|212223426|ref|YP_002306662.1| - 1.7e-05 25.6 27.4 0.013 16.4 1.9 4.7 3 1 1 5 5 5 2 4Fe-4S double cluster binding domain Fer4_21 PF14697.6 gi|212223426|ref|YP_002306662.1| - 3e-05 24.0 29.0 8.7e-05 22.6 9.1 3.5 1 1 2 3 3 3 2 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|212223426|ref|YP_002306662.1| - 0.00016 22.4 42.1 0.022 15.7 6.2 4.2 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_4 PF12800.7 gi|212223426|ref|YP_002306662.1| - 0.0002 21.6 34.7 0.014 15.8 3.8 4.6 4 1 0 4 4 4 3 4Fe-4S binding domain Fer4_17 PF13534.6 gi|212223426|ref|YP_002306662.1| - 0.0085 16.6 28.8 0.16 12.6 1.6 4.4 2 1 1 4 4 4 1 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|212223426|ref|YP_002306662.1| - 1.3 9.5 34.9 5.3 7.6 14.9 4.2 2 2 1 3 3 3 0 4Fe-4S dicluster domain Molybdopterin PF00384.22 gi|212223427|ref|YP_002306663.1| - 4.1e-96 322.6 0.0 4.8e-96 322.4 0.0 1.0 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.21 gi|212223427|ref|YP_002306663.1| - 1.8e-28 98.8 0.0 3.1e-28 98.0 0.0 1.4 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.16 gi|212223427|ref|YP_002306663.1| - 2e-09 37.3 0.2 4.6e-09 36.1 0.2 1.7 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain CDC48_N PF02359.18 gi|212223427|ref|YP_002306663.1| - 0.042 14.0 0.0 0.087 13.0 0.0 1.5 1 0 0 1 1 1 0 Cell division protein 48 (CDC48), N-terminal domain Meth_synt_2 PF01717.18 gi|212223427|ref|YP_002306663.1| - 0.16 11.2 0.1 0.29 10.4 0.1 1.3 1 0 0 1 1 1 0 Cobalamin-independent synthase, Catalytic domain TetR_N PF00440.23 gi|212223428|ref|YP_002306664.1| - 7.7e-21 73.6 0.4 1.4e-20 72.8 0.4 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family HTH_Tnp_1_2 PF13022.6 gi|212223428|ref|YP_002306664.1| - 0.00013 22.1 0.7 0.0002 21.5 0.2 1.6 2 0 0 2 2 2 1 Helix-turn-helix of insertion element transposase MATalpha_HMGbox PF04769.12 gi|212223428|ref|YP_002306664.1| - 0.046 13.0 0.0 0.23 10.8 0.0 1.9 2 0 0 2 2 2 0 Mating-type protein MAT alpha 1 HMG-box TipAS PF07739.13 gi|212223428|ref|YP_002306664.1| - 0.05 14.2 0.3 3.9 8.1 0.5 2.2 2 0 0 2 2 2 0 TipAS antibiotic-recognition domain HupF_HypC PF01455.18 gi|212223429|ref|YP_002306665.1| - 9.3e-30 102.6 0.1 1.1e-29 102.4 0.1 1.0 1 0 0 1 1 1 1 HupF/HypC family HypD PF01924.16 gi|212223430|ref|YP_002306666.1| - 6.7e-33 114.2 0.2 7.8e-33 114.0 0.2 1.0 1 0 0 1 1 1 1 Hydrogenase formation hypA family Rad50_zn_hook PF04423.14 gi|212223430|ref|YP_002306666.1| - 0.035 13.9 0.2 4.1 7.3 0.0 2.2 2 0 0 2 2 2 0 Rad50 zinc hook motif HypD PF01924.16 gi|212223431|ref|YP_002306667.1| - 5.8e-84 282.2 0.0 6.5e-84 282.0 0.0 1.0 1 0 0 1 1 1 1 Hydrogenase formation hypA family Ubiq_cyt_C_chap PF03981.12 gi|212223431|ref|YP_002306667.1| - 0.19 11.8 0.0 0.26 11.4 0.0 1.2 1 0 0 1 1 1 0 Ubiquinol-cytochrome C chaperone Sua5_yciO_yrdC PF01300.18 gi|212223432|ref|YP_002306668.1| - 2.6e-47 160.6 0.0 4.1e-47 160.0 0.0 1.3 1 0 0 1 1 1 1 Telomere recombination zf-HYPF PF07503.12 gi|212223432|ref|YP_002306668.1| - 5.9e-32 109.1 18.2 1.8e-16 59.6 3.0 2.5 2 0 0 2 2 2 2 HypF finger HypF_C PF17788.1 gi|212223432|ref|YP_002306668.1| - 9.9e-30 103.3 0.1 2e-29 102.3 0.1 1.5 1 0 0 1 1 1 1 HypF Kae1-like domain Acylphosphatase PF00708.18 gi|212223432|ref|YP_002306668.1| - 2.5e-23 82.2 0.0 8.8e-23 80.5 0.0 2.0 1 0 0 1 1 1 1 Acylphosphatase Peptidase_M22 PF00814.25 gi|212223432|ref|YP_002306668.1| - 1.6e-08 34.6 0.1 9.1e-06 25.6 0.0 2.3 2 0 0 2 2 2 2 Glycoprotease family Carbam_trans_N PF02543.15 gi|212223432|ref|YP_002306668.1| - 0.013 15.2 0.2 0.074 12.7 0.0 2.0 2 0 0 2 2 2 0 Carbamoyltransferase N-terminus NMD3 PF04981.13 gi|212223432|ref|YP_002306668.1| - 0.26 10.7 3.6 0.74 9.2 0.2 2.3 1 1 0 2 2 2 0 NMD3 family Lar_restr_allev PF14354.6 gi|212223432|ref|YP_002306668.1| - 0.36 11.3 2.7 4.9 7.6 0.8 2.5 2 0 0 2 2 2 0 Restriction alleviation protein Lar Zn-ribbon_8 PF09723.10 gi|212223432|ref|YP_002306668.1| - 5.7 7.1 8.9 25 5.1 3.3 3.1 3 0 0 3 3 3 0 Zinc ribbon domain AIRS_C PF02769.22 gi|212223433|ref|YP_002306669.1| - 2.4e-34 118.7 2.1 3.6e-34 118.1 2.1 1.3 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.24 gi|212223433|ref|YP_002306669.1| - 6.1e-17 62.1 0.3 1.5e-16 60.8 0.3 1.6 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain TBP PF00352.21 gi|212223434|ref|YP_002306670.1| - 0.0048 16.8 0.0 0.0058 16.6 0.0 1.1 1 0 0 1 1 1 1 Transcription factor TFIID (or TATA-binding protein, TBP) UPF0180 PF03698.13 gi|212223434|ref|YP_002306670.1| - 0.13 12.5 0.1 0.87 9.8 0.1 2.2 1 1 0 1 1 1 0 Uncharacterised protein family (UPF0180) Aminotran_5 PF00266.19 gi|212223435|ref|YP_002306671.1| - 1.7e-138 461.7 0.0 1.9e-138 461.5 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.17 gi|212223435|ref|YP_002306671.1| - 5.4e-06 26.0 0.0 7.9e-06 25.4 0.0 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.21 gi|212223435|ref|YP_002306671.1| - 1e-05 25.0 0.0 1.4e-05 24.6 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase Aminotran_1_2 PF00155.21 gi|212223435|ref|YP_002306671.1| - 1.6e-05 24.3 0.0 2.8e-05 23.4 0.0 1.3 2 0 0 2 2 2 1 Aminotransferase class I and II Cys_Met_Meta_PP PF01053.20 gi|212223435|ref|YP_002306671.1| - 4.1e-05 22.3 0.0 8e-05 21.3 0.0 1.4 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Pyridoxal_deC PF00282.19 gi|212223435|ref|YP_002306671.1| - 0.02 13.7 0.0 0.038 12.7 0.0 1.4 1 0 0 1 1 1 0 Pyridoxal-dependent decarboxylase conserved domain EutN_CcmL PF03319.13 gi|212223435|ref|YP_002306671.1| - 0.043 14.4 0.1 3.1 8.4 0.0 2.3 2 0 0 2 2 2 0 Ethanolamine utilisation protein EutN/carboxysome NAD_kinase PF01513.21 gi|212223436|ref|YP_002306672.1| - 5.9e-48 163.5 0.0 6.7e-48 163.4 0.0 1.0 1 0 0 1 1 1 1 ATP-NAD kinase DAGK_cat PF00781.24 gi|212223436|ref|YP_002306672.1| - 4.1e-06 26.4 0.6 3e-05 23.7 0.2 2.7 2 1 0 2 2 2 1 Diacylglycerol kinase catalytic domain LDcluster4 PF18306.1 gi|212223436|ref|YP_002306672.1| - 0.096 12.3 0.0 5.9 6.4 0.0 2.4 2 0 0 2 2 2 0 SLOG cluster4 family DUF3134 PF11332.8 gi|212223436|ref|YP_002306672.1| - 0.27 11.6 1.6 0.53 10.6 0.0 2.2 3 0 0 3 3 3 0 Protein of unknown function (DUF3134) Ion_trans_2 PF07885.16 gi|212223437|ref|YP_002306673.1| - 1.3e-13 50.7 6.9 3.2e-13 49.4 6.9 1.7 1 0 0 1 1 1 1 Ion channel zf-C3Hc3H PF13891.6 gi|212223437|ref|YP_002306673.1| - 0.001 19.4 0.1 0.0017 18.7 0.1 1.3 1 0 0 1 1 1 1 Potential DNA-binding domain Pentapeptide_3 PF13576.6 gi|212223437|ref|YP_002306673.1| - 0.025 14.7 1.4 28 5.0 0.1 4.0 4 0 0 4 4 4 0 Pentapeptide repeats (9 copies) DUF3110 PF11360.8 gi|212223438|ref|YP_002306674.1| - 0.16 12.2 0.0 0.21 11.8 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3110) DUF4405 PF14358.6 gi|212223440|ref|YP_002306676.1| - 1e-09 38.8 11.2 1.2e-09 38.5 11.2 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4405) Ni_hydr_CYTB PF01292.20 gi|212223440|ref|YP_002306676.1| - 0.0065 16.1 5.4 0.0075 15.9 5.4 1.1 1 0 0 1 1 1 1 Prokaryotic cytochrome b561 Peripla_BP_2 PF01497.18 gi|212223442|ref|YP_002306678.1| - 1.6e-35 122.8 0.3 2.4e-35 122.2 0.3 1.2 1 0 0 1 1 1 1 Periplasmic binding protein Oxidored_molyb PF00174.19 gi|212223442|ref|YP_002306678.1| - 0.00093 18.8 0.0 0.0021 17.7 0.0 1.6 1 0 0 1 1 1 1 Oxidoreductase molybdopterin binding domain MIF4G PF02854.19 gi|212223442|ref|YP_002306678.1| - 0.058 13.0 0.1 0.086 12.5 0.1 1.2 1 0 0 1 1 1 0 MIF4G domain ERp29 PF07749.12 gi|212223442|ref|YP_002306678.1| - 0.067 14.1 0.4 0.13 13.2 0.4 1.4 1 0 0 1 1 1 0 Endoplasmic reticulum protein ERp29, C-terminal domain Formyl_trans_N PF00551.19 gi|212223442|ref|YP_002306678.1| - 0.15 11.8 0.0 4.1 7.1 0.0 2.3 2 0 0 2 2 2 0 Formyl transferase FecCD PF01032.18 gi|212223443|ref|YP_002306679.1| - 8.2e-85 284.5 33.7 1e-84 284.2 33.7 1.0 1 0 0 1 1 1 1 FecCD transport family ABC-3 PF00950.17 gi|212223443|ref|YP_002306679.1| - 0.00025 20.6 17.3 0.00025 20.6 17.3 1.7 1 1 0 1 1 1 1 ABC 3 transport family COX14 PF14880.6 gi|212223443|ref|YP_002306679.1| - 0.16 11.8 0.5 0.82 9.6 0.0 2.3 2 0 0 2 2 2 0 Cytochrome oxidase c assembly ABC_tran PF00005.27 gi|212223444|ref|YP_002306680.1| - 2.7e-29 102.4 0.0 3.9e-29 101.9 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|212223444|ref|YP_002306680.1| - 3.9e-13 49.9 1.1 1.1e-05 25.5 0.1 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|212223444|ref|YP_002306680.1| - 1.5e-08 34.4 0.1 0.004 16.6 0.0 2.2 1 1 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|212223444|ref|YP_002306680.1| - 2e-07 31.8 0.0 5.5e-07 30.3 0.0 1.7 2 0 0 2 2 2 1 AAA domain AAA_29 PF13555.6 gi|212223444|ref|YP_002306680.1| - 1.9e-05 24.3 0.0 4.8e-05 23.0 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 gi|212223444|ref|YP_002306680.1| - 0.00067 19.6 0.0 0.0015 18.5 0.0 1.5 1 0 0 1 1 1 1 RsgA GTPase AAA_15 PF13175.6 gi|212223444|ref|YP_002306680.1| - 0.00076 19.3 0.0 0.0026 17.5 0.0 1.7 2 0 0 2 2 2 1 AAA ATPase domain AAA PF00004.29 gi|212223444|ref|YP_002306680.1| - 0.0038 17.7 0.0 0.009 16.4 0.0 1.9 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) ABC_ATPase PF09818.9 gi|212223444|ref|YP_002306680.1| - 0.013 14.3 0.1 0.063 12.1 0.1 1.8 2 0 0 2 2 2 0 Predicted ATPase of the ABC class AAA_22 PF13401.6 gi|212223444|ref|YP_002306680.1| - 0.013 15.8 0.4 0.055 13.8 0.4 2.1 1 1 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|212223444|ref|YP_002306680.1| - 0.026 14.9 0.0 0.043 14.2 0.0 1.4 1 1 0 1 1 1 0 AAA ATPase domain AAA_30 PF13604.6 gi|212223444|ref|YP_002306680.1| - 0.029 14.1 0.0 0.099 12.3 0.0 1.7 2 0 0 2 2 2 0 AAA domain Mg_chelatase PF01078.21 gi|212223444|ref|YP_002306680.1| - 0.029 13.8 0.0 0.048 13.0 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI MukB PF04310.12 gi|212223444|ref|YP_002306680.1| - 0.03 14.1 0.0 0.048 13.5 0.0 1.3 1 0 0 1 1 1 0 MukB N-terminal AAA_13 PF13166.6 gi|212223444|ref|YP_002306680.1| - 0.038 12.7 0.0 5.2 5.6 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_27 PF13514.6 gi|212223444|ref|YP_002306680.1| - 0.053 13.1 0.0 0.083 12.5 0.0 1.3 1 0 0 1 1 1 0 AAA domain Zeta_toxin PF06414.12 gi|212223444|ref|YP_002306680.1| - 0.24 10.7 0.0 0.4 9.9 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin Peptidase_M23 PF01551.22 gi|212223445|ref|YP_002306681.1| - 8.6e-05 22.7 0.0 0.00017 21.7 0.0 1.5 1 0 0 1 1 1 1 Peptidase family M23 NTPase_1 PF03266.15 gi|212223446|ref|YP_002306682.1| - 0.003 17.5 0.0 0.014 15.3 0.0 1.8 1 1 0 1 1 1 1 NTPase PAM2 PF07145.15 gi|212223446|ref|YP_002306682.1| - 0.012 15.2 0.0 0.029 14.0 0.0 1.6 1 0 0 1 1 1 0 Ataxin-2 C-terminal region Oxidored_molyb PF00174.19 gi|212223447|ref|YP_002306683.1| - 2.1e-25 89.3 0.0 6.9e-20 71.4 0.0 3.2 2 2 0 2 2 2 2 Oxidoreductase molybdopterin binding domain DUF4923 PF16270.5 gi|212223447|ref|YP_002306683.1| - 0.017 15.0 0.0 0.039 13.8 0.0 1.5 1 0 0 1 1 1 0 Lipocalin-like domain (DUF4923) Oxidored_molyb PF00174.19 gi|212223448|ref|YP_002306684.1| - 1e-07 31.8 0.1 0.016 14.8 0.0 3.2 3 0 0 3 3 3 3 Oxidoreductase molybdopterin binding domain DUF364 PF04016.12 gi|212223449|ref|YP_002306685.1| - 2.8e-33 114.6 0.0 4.9e-33 113.8 0.0 1.3 1 0 0 1 1 1 1 Putative heavy-metal chelation DUF4213 PF13938.6 gi|212223449|ref|YP_002306685.1| - 1.3e-14 54.1 0.0 2.2e-14 53.4 0.0 1.4 1 0 0 1 1 1 1 Putative heavy-metal chelation DNA_photolyase PF00875.18 gi|212223449|ref|YP_002306685.1| - 0.17 11.9 0.0 0.93 9.5 0.0 1.9 2 0 0 2 2 2 0 DNA photolyase MFS_1 PF07690.16 gi|212223450|ref|YP_002306686.1| - 2.3e-22 79.4 61.3 1.1e-20 73.9 35.5 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.7 gi|212223450|ref|YP_002306686.1| - 7e-05 21.9 2.1 7e-05 21.9 2.1 3.3 2 2 1 3 3 3 1 MFS_1 like family Nuc_H_symport PF03825.16 gi|212223450|ref|YP_002306686.1| - 0.0091 15.0 12.3 0.0071 15.4 4.6 2.3 2 0 0 2 2 2 2 Nucleoside H+ symporter DUF1761 PF08570.10 gi|212223450|ref|YP_002306686.1| - 0.02 15.1 2.2 0.02 15.1 2.2 3.6 3 1 0 3 3 3 0 Protein of unknown function (DUF1761) Pyr_redox_2 PF07992.14 gi|212223451|ref|YP_002306687.1| - 3e-58 197.4 0.8 4.1e-58 196.9 0.8 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|212223451|ref|YP_002306687.1| - 5.7e-21 74.9 7.1 6e-16 58.8 1.6 3.6 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.22 gi|212223451|ref|YP_002306687.1| - 3.7e-20 72.2 0.2 1.3e-19 70.5 0.0 2.0 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox_3 PF13738.6 gi|212223451|ref|YP_002306687.1| - 3e-17 62.8 5.3 3.1e-14 52.9 0.8 2.7 1 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|212223451|ref|YP_002306687.1| - 2.5e-07 29.8 1.2 0.0031 16.3 0.0 4.0 3 1 1 4 4 4 1 HI0933-like protein NAD_binding_7 PF13241.6 gi|212223451|ref|YP_002306687.1| - 8.2e-07 29.4 1.4 0.00074 19.9 0.6 2.7 2 1 0 2 2 2 2 Putative NAD(P)-binding FAD_binding_2 PF00890.24 gi|212223451|ref|YP_002306687.1| - 4.8e-06 25.9 0.7 0.0067 15.6 0.0 2.4 2 1 0 2 2 2 2 FAD binding domain TrkA_N PF02254.18 gi|212223451|ref|YP_002306687.1| - 1.2e-05 25.6 1.7 0.26 11.6 1.1 3.3 2 1 0 2 2 2 2 TrkA-N domain NAD_binding_8 PF13450.6 gi|212223451|ref|YP_002306687.1| - 1.7e-05 24.9 0.0 0.00097 19.3 0.0 2.5 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain DAO PF01266.24 gi|212223451|ref|YP_002306687.1| - 2.7e-05 23.9 4.3 0.1 12.2 0.0 3.8 2 1 1 3 3 3 1 FAD dependent oxidoreductase NAD_binding_9 PF13454.6 gi|212223451|ref|YP_002306687.1| - 6.7e-05 22.9 1.0 0.29 11.1 0.0 3.9 3 1 1 4 4 4 1 FAD-NAD(P)-binding GIDA PF01134.22 gi|212223451|ref|YP_002306687.1| - 0.00012 21.3 5.8 0.082 12.0 0.1 3.2 3 1 0 3 3 3 2 Glucose inhibited division protein A Lycopene_cycl PF05834.12 gi|212223451|ref|YP_002306687.1| - 0.00012 21.3 0.1 0.028 13.5 0.0 2.4 2 0 0 2 2 2 1 Lycopene cyclase protein 3HCDH_N PF02737.18 gi|212223451|ref|YP_002306687.1| - 0.0003 20.7 1.1 0.00054 19.9 0.2 1.9 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain UDPG_MGDP_dh_N PF03721.14 gi|212223451|ref|YP_002306687.1| - 0.00072 19.2 0.1 0.0013 18.4 0.1 1.4 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AlaDh_PNT_C PF01262.21 gi|212223451|ref|YP_002306687.1| - 0.0012 18.2 0.6 0.088 12.1 0.0 2.4 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain Amino_oxidase PF01593.24 gi|212223451|ref|YP_002306687.1| - 0.0016 17.8 0.0 0.62 9.3 0.0 3.0 2 1 1 3 3 3 1 Flavin containing amine oxidoreductase Trp_halogenase PF04820.14 gi|212223451|ref|YP_002306687.1| - 0.0023 16.9 1.4 0.098 11.5 0.1 2.6 2 1 0 2 2 2 1 Tryptophan halogenase F420_oxidored PF03807.17 gi|212223451|ref|YP_002306687.1| - 0.0033 18.0 1.1 0.053 14.1 0.3 2.8 2 1 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent Thi4 PF01946.17 gi|212223451|ref|YP_002306687.1| - 0.011 15.0 2.2 0.017 14.4 0.0 2.4 3 1 0 3 3 3 0 Thi4 family ApbA PF02558.16 gi|212223451|ref|YP_002306687.1| - 0.011 15.4 0.6 0.031 13.9 0.1 1.9 2 0 0 2 2 2 0 Ketopantoate reductase PanE/ApbA Mqo PF06039.15 gi|212223451|ref|YP_002306687.1| - 0.025 13.1 0.0 0.043 12.4 0.0 1.3 1 0 0 1 1 1 0 Malate:quinone oxidoreductase (Mqo) 2-Hacid_dh_C PF02826.19 gi|212223451|ref|YP_002306687.1| - 0.026 13.9 1.9 1.2 8.5 0.3 2.7 2 1 1 3 3 3 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Sacchrp_dh_NADP PF03435.18 gi|212223451|ref|YP_002306687.1| - 0.027 14.7 0.4 0.25 11.6 0.1 2.2 2 0 0 2 2 2 0 Saccharopine dehydrogenase NADP binding domain Shikimate_DH PF01488.20 gi|212223451|ref|YP_002306687.1| - 0.036 14.1 3.0 0.069 13.2 0.4 2.4 2 1 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase FAD_binding_3 PF01494.19 gi|212223451|ref|YP_002306687.1| - 0.069 12.4 0.5 2.6 7.2 0.2 2.7 3 0 0 3 3 3 0 FAD binding domain NAD_binding_2 PF03446.15 gi|212223451|ref|YP_002306687.1| - 0.099 12.8 0.1 0.92 9.7 0.1 2.2 2 0 0 2 2 2 0 NAD binding domain of 6-phosphogluconate dehydrogenase Nbl1_Borealin_N PF10444.9 gi|212223451|ref|YP_002306687.1| - 0.11 12.1 0.2 0.26 11.0 0.2 1.5 1 0 0 1 1 1 0 Nbl1 / Borealin N terminal FAD_oxidored PF12831.7 gi|212223451|ref|YP_002306687.1| - 0.98 8.7 4.7 3.4 6.9 0.1 2.5 2 1 0 2 2 2 0 FAD dependent oxidoreductase NMD3 PF04981.13 gi|212223452|ref|YP_002306688.1| - 3.1e-61 206.9 0.1 5.3e-61 206.2 0.1 1.4 1 0 0 1 1 1 1 NMD3 family EFP PF01132.20 gi|212223452|ref|YP_002306688.1| - 0.0072 16.3 0.1 0.039 14.0 0.1 2.1 2 0 0 2 2 2 1 Elongation factor P (EF-P) OB domain DUF555 PF04475.12 gi|212223452|ref|YP_002306688.1| - 0.036 14.4 0.0 0.08 13.3 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF555) Tudor_RapA PF18337.1 gi|212223452|ref|YP_002306688.1| - 0.055 13.7 0.1 4.9 7.4 0.0 2.6 2 0 0 2 2 2 0 RapA N-terminal Tudor like domain zf-ribbon_3 PF13248.6 gi|212223452|ref|YP_002306688.1| - 1.1 8.8 3.7 13 5.3 0.0 3.1 3 0 0 3 3 3 0 zinc-ribbon domain DZR PF12773.7 gi|212223452|ref|YP_002306688.1| - 2 8.5 6.2 53 3.9 4.3 2.9 2 1 0 2 2 2 0 Double zinc ribbon Rpr2 PF04032.16 gi|212223452|ref|YP_002306688.1| - 2.3 8.6 4.5 15 5.9 0.0 2.8 3 0 0 3 3 3 0 RNAse P Rpr2/Rpp21/SNM1 subunit domain DUF424 PF04242.13 gi|212223453|ref|YP_002306689.1| - 2.3e-33 114.3 0.0 2.5e-33 114.2 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF424) Peptidase_S8 PF00082.22 gi|212223454|ref|YP_002306690.1| - 3.1e-59 200.7 0.4 5.2e-59 200.0 0.4 1.3 1 0 0 1 1 1 1 Subtilase family PMT_2 PF13231.6 gi|212223456|ref|YP_002306692.1| - 1.5e-14 54.5 20.0 1.5e-14 54.5 20.0 2.6 4 0 0 4 4 4 1 Dolichyl-phosphate-mannose-protein mannosyltransferase Glyco_hydro_127 PF07944.12 gi|212223456|ref|YP_002306692.1| - 0.00069 18.2 0.5 0.002 16.7 0.5 1.7 1 1 0 1 1 1 1 Beta-L-arabinofuranosidase, GH127 Pec_lyase PF09492.10 gi|212223456|ref|YP_002306692.1| - 0.0032 16.8 4.9 0.049 12.9 0.5 2.2 2 0 0 2 2 2 2 Pectic acid lyase SQHop_cyclase_C PF13243.6 gi|212223456|ref|YP_002306692.1| - 0.035 13.2 0.5 0.082 12.0 0.1 1.7 2 0 0 2 2 2 0 Squalene-hopene cyclase C-terminal domain SQHop_cyclase_N PF13249.6 gi|212223456|ref|YP_002306692.1| - 0.11 11.6 0.8 0.33 10.0 0.1 2.0 2 1 1 3 3 3 0 Squalene-hopene cyclase N-terminal domain Prenyltrans PF00432.21 gi|212223456|ref|YP_002306692.1| - 0.49 10.2 3.7 11 5.9 0.0 3.5 4 0 0 4 4 4 0 Prenyltransferase and squalene oxidase repeat PPDK_N PF01326.19 gi|212223457|ref|YP_002306693.1| - 1.1e-117 393.0 3.1 1.6e-117 392.4 3.1 1.2 1 0 0 1 1 1 1 Pyruvate phosphate dikinase, PEP/pyruvate binding domain PEP-utilizers_C PF02896.18 gi|212223457|ref|YP_002306693.1| - 2.4e-94 315.8 0.2 5.2e-94 314.6 0.0 1.6 2 0 0 2 2 2 1 PEP-utilising enzyme, TIM barrel domain PEP-utilizers PF00391.23 gi|212223457|ref|YP_002306693.1| - 1.1e-27 95.5 1.8 2.7e-27 94.3 1.8 1.7 1 0 0 1 1 1 1 PEP-utilising enzyme, mobile domain Pep_deformylase PF01327.21 gi|212223457|ref|YP_002306693.1| - 0.025 14.2 0.1 0.12 12.0 0.0 2.1 2 0 0 2 2 2 0 Polypeptide deformylase MatE PF01554.18 gi|212223458|ref|YP_002306694.1| - 5e-64 214.8 25.6 9.7e-35 119.6 8.1 3.2 4 0 0 4 4 4 2 MatE Polysacc_synt_C PF14667.6 gi|212223458|ref|YP_002306694.1| - 4.1e-09 36.7 6.3 4.1e-09 36.7 6.3 4.1 3 1 1 4 4 4 2 Polysaccharide biosynthesis C-terminal domain MatE PF01554.18 gi|212223459|ref|YP_002306695.1| - 5.3e-58 195.2 25.3 3.3e-32 111.4 9.8 3.0 4 0 0 4 4 4 2 MatE Polysacc_synt_C PF14667.6 gi|212223459|ref|YP_002306695.1| - 1.2e-08 35.1 8.8 1.2e-08 35.1 8.8 4.8 4 2 1 5 5 5 2 Polysaccharide biosynthesis C-terminal domain UPRTase PF14681.6 gi|212223460|ref|YP_002306696.1| - 7.6e-50 169.2 0.1 8.8e-50 169.0 0.1 1.0 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase Pribosyltran PF00156.27 gi|212223460|ref|YP_002306696.1| - 1.4e-11 44.2 1.4 1.9e-11 43.7 1.4 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase domain PRTase_2 PF15609.6 gi|212223460|ref|YP_002306696.1| - 0.0014 18.1 0.1 0.0023 17.5 0.1 1.6 1 1 0 1 1 1 1 Phosphoribosyl transferase Secretin_N PF03958.17 gi|212223460|ref|YP_002306696.1| - 0.049 14.0 0.1 0.15 12.4 0.0 2.0 2 0 0 2 2 2 0 Bacterial type II/III secretion system short domain Topoisom_bac PF01131.20 gi|212223461|ref|YP_002306697.1| - 9.5e-133 443.2 0.0 1.3e-132 442.7 0.0 1.2 1 0 0 1 1 1 1 DNA topoisomerase Toprim PF01751.22 gi|212223461|ref|YP_002306697.1| - 3.9e-19 68.8 0.2 3.5e-18 65.7 0.0 2.4 2 0 0 2 2 2 1 Toprim domain zf-C4_Topoisom PF01396.19 gi|212223461|ref|YP_002306697.1| - 9.4e-14 50.9 2.8 2e-13 49.9 2.8 1.6 1 0 0 1 1 1 1 Topoisomerase DNA binding C4 zinc finger DUF4364 PF14277.6 gi|212223461|ref|YP_002306697.1| - 0.1 12.4 0.6 0.29 10.9 0.5 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4364) ADK_lid PF05191.14 gi|212223461|ref|YP_002306697.1| - 0.1 12.6 1.9 0.16 12.0 0.2 2.2 2 0 0 2 2 2 0 Adenylate kinase, active site lid FAD_binding_3 PF01494.19 gi|212223462|ref|YP_002306698.1| - 2.1e-19 70.0 0.6 8.6e-18 64.7 0.6 2.7 1 1 0 1 1 1 1 FAD binding domain Lycopene_cycl PF05834.12 gi|212223462|ref|YP_002306698.1| - 1.5e-13 50.6 0.0 2.8e-13 49.7 0.0 1.4 1 1 0 1 1 1 1 Lycopene cyclase protein FAD_oxidored PF12831.7 gi|212223462|ref|YP_002306698.1| - 4e-11 42.9 0.0 2.2e-10 40.5 0.0 2.0 2 0 0 2 2 2 1 FAD dependent oxidoreductase DAO PF01266.24 gi|212223462|ref|YP_002306698.1| - 3.3e-10 40.1 2.5 0.00011 22.0 1.1 2.3 1 1 1 2 2 2 2 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|212223462|ref|YP_002306698.1| - 6.9e-10 38.6 0.4 1.5e-05 24.3 0.2 2.3 2 0 0 2 2 2 2 FAD binding domain Trp_halogenase PF04820.14 gi|212223462|ref|YP_002306698.1| - 4e-07 29.3 0.4 0.002 17.1 0.0 2.2 2 0 0 2 2 2 2 Tryptophan halogenase Pyr_redox_2 PF07992.14 gi|212223462|ref|YP_002306698.1| - 3.9e-06 26.3 3.8 0.00026 20.3 2.2 2.5 2 1 1 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|212223462|ref|YP_002306698.1| - 2.2e-05 24.6 0.4 7.2e-05 22.9 0.0 2.1 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.14 gi|212223462|ref|YP_002306698.1| - 4.7e-05 22.3 1.2 0.00017 20.4 0.4 1.9 2 0 0 2 2 2 1 HI0933-like protein Thi4 PF01946.17 gi|212223462|ref|YP_002306698.1| - 9.7e-05 21.7 1.2 0.00086 18.6 0.2 2.4 2 0 0 2 2 2 1 Thi4 family GIDA PF01134.22 gi|212223462|ref|YP_002306698.1| - 0.00054 19.2 1.3 0.0014 17.8 0.5 1.9 2 0 0 2 2 2 1 Glucose inhibited division protein A Pyr_redox PF00070.27 gi|212223462|ref|YP_002306698.1| - 0.00059 20.3 0.8 0.51 10.9 0.1 3.4 4 1 0 4 4 3 1 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.18 gi|212223462|ref|YP_002306698.1| - 0.0035 17.2 0.1 0.0081 16.1 0.1 1.6 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain GDI PF00996.18 gi|212223462|ref|YP_002306698.1| - 0.03 12.8 0.1 0.15 10.5 0.0 1.9 2 0 0 2 2 2 0 GDP dissociation inhibitor SE PF08491.10 gi|212223462|ref|YP_002306698.1| - 0.059 12.4 0.0 0.12 11.4 0.0 1.4 1 0 0 1 1 1 0 Squalene epoxidase DUF596 PF04591.12 gi|212223462|ref|YP_002306698.1| - 0.11 12.6 0.0 0.26 11.5 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function, DUF596 Fer4 PF00037.27 gi|212223463|ref|YP_002306699.1| - 3.9e-16 58.1 12.2 1.3e-08 34.3 1.4 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|212223463|ref|YP_002306699.1| - 4.5e-12 45.5 12.1 4.9e-07 29.6 2.5 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|212223463|ref|YP_002306699.1| - 8.3e-11 42.3 6.4 1.5e-05 25.5 0.3 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|212223463|ref|YP_002306699.1| - 4.8e-10 38.9 11.2 2.4e-05 24.1 1.3 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|212223463|ref|YP_002306699.1| - 3.4e-09 37.5 7.6 0.00028 21.7 2.2 2.1 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_21 PF14697.6 gi|212223463|ref|YP_002306699.1| - 8.7e-09 35.4 8.8 1.9e-08 34.3 8.9 1.5 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|212223463|ref|YP_002306699.1| - 8.9e-09 35.3 23.3 1.5e-06 28.2 12.3 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|212223463|ref|YP_002306699.1| - 1.5e-07 31.5 19.9 1.3e-05 25.2 11.2 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|212223463|ref|YP_002306699.1| - 3.3e-06 27.4 7.2 0.0032 17.9 0.8 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|212223463|ref|YP_002306699.1| - 2.3e-05 24.6 12.2 0.0016 18.8 3.6 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|212223463|ref|YP_002306699.1| - 4.5e-05 23.9 7.5 0.037 14.6 1.2 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|212223463|ref|YP_002306699.1| - 5.4e-05 23.4 5.9 7.1e-05 23.0 5.9 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|212223463|ref|YP_002306699.1| - 0.00069 20.1 12.3 0.088 13.4 4.3 2.2 2 0 0 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_3 PF12798.7 gi|212223463|ref|YP_002306699.1| - 0.025 15.5 17.5 0.054 14.4 4.3 2.2 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_15 PF13459.6 gi|212223463|ref|YP_002306699.1| - 0.097 13.4 13.9 0.34 11.7 2.7 2.7 2 2 0 2 2 2 0 4Fe-4S single cluster domain Fer4_22 PF17179.4 gi|212223463|ref|YP_002306699.1| - 0.85 10.5 14.0 3.5 8.5 3.6 2.1 1 1 1 2 2 2 0 4Fe-4S dicluster domain HTH_20 PF12840.7 gi|212223464|ref|YP_002306700.1| - 6.1e-10 39.0 0.0 7e-06 26.0 0.0 2.6 3 0 0 3 3 3 2 Helix-turn-helix domain HTH_5 PF01022.20 gi|212223464|ref|YP_002306700.1| - 2.2e-06 27.4 0.8 0.00044 20.0 0.2 2.6 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.6 gi|212223464|ref|YP_002306700.1| - 2.6e-06 26.9 3.5 0.0051 16.4 0.1 3.3 3 0 0 3 3 3 2 Winged helix-turn-helix DNA-binding MarR PF01047.22 gi|212223464|ref|YP_002306700.1| - 0.00015 21.6 0.0 0.011 15.7 0.0 2.5 2 0 0 2 2 2 1 MarR family HTH_34 PF13601.6 gi|212223464|ref|YP_002306700.1| - 0.00046 20.3 0.2 0.43 10.8 0.0 2.5 2 0 0 2 2 2 2 Winged helix DNA-binding domain HTH_AsnC-type PF13404.6 gi|212223464|ref|YP_002306700.1| - 0.00079 19.2 0.5 0.3 10.9 0.1 3.3 3 0 0 3 3 3 1 AsnC-type helix-turn-helix domain HTH_11 PF08279.12 gi|212223464|ref|YP_002306700.1| - 0.003 17.5 1.5 0.21 11.6 0.0 2.8 3 0 0 3 3 3 1 HTH domain FUR PF01475.19 gi|212223464|ref|YP_002306700.1| - 0.014 15.5 0.1 0.053 13.7 0.0 1.8 2 0 0 2 2 2 0 Ferric uptake regulator family PadR PF03551.14 gi|212223464|ref|YP_002306700.1| - 0.026 14.5 0.1 0.11 12.5 0.0 2.0 2 1 1 3 3 3 0 Transcriptional regulator PadR-like family Cor1 PF04803.12 gi|212223464|ref|YP_002306700.1| - 0.06 13.6 0.2 0.11 12.8 0.2 1.4 1 0 0 1 1 1 0 Cor1/Xlr/Xmr conserved region DUF3987 PF13148.6 gi|212223464|ref|YP_002306700.1| - 0.062 12.3 0.5 0.086 11.8 0.5 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3987) Thioredoxin_3 PF13192.6 gi|212223465|ref|YP_002306701.1| - 3.1e-23 81.6 0.0 6.1e-15 55.0 0.1 2.2 2 0 0 2 2 2 2 Thioredoxin domain Thioredoxin PF00085.20 gi|212223465|ref|YP_002306701.1| - 1.3e-12 47.6 0.0 4e-05 23.5 0.0 2.1 2 0 0 2 2 2 2 Thioredoxin ABC_transp_aux PF09822.9 gi|212223465|ref|YP_002306701.1| - 1.1e-11 44.7 0.0 5.2e-05 22.9 0.0 2.0 2 0 0 2 2 2 2 ABC-type uncharacterized transport system Glutaredoxin PF00462.24 gi|212223465|ref|YP_002306701.1| - 6.9e-10 39.0 0.6 0.00017 21.8 0.4 2.8 2 1 0 2 2 2 2 Glutaredoxin Thioredoxin_2 PF13098.6 gi|212223465|ref|YP_002306701.1| - 1e-08 35.6 4.0 0.001 19.5 0.0 3.4 2 2 0 2 2 2 2 Thioredoxin-like domain Thioredoxin_9 PF14595.6 gi|212223465|ref|YP_002306701.1| - 2e-05 24.4 0.0 0.0002 21.1 0.1 2.0 2 0 0 2 2 2 1 Thioredoxin DUF836 PF05768.14 gi|212223465|ref|YP_002306701.1| - 0.0004 20.7 0.0 0.033 14.6 0.1 2.4 2 0 0 2 2 2 1 Glutaredoxin-like domain (DUF836) TraF PF13728.6 gi|212223465|ref|YP_002306701.1| - 0.0012 18.7 0.0 1.9 8.3 0.0 2.7 2 1 0 2 2 2 2 F plasmid transfer operon protein DUF393 PF04134.12 gi|212223465|ref|YP_002306701.1| - 0.014 16.7 0.0 0.081 14.3 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function, DUF393 Thioredoxin_8 PF13905.6 gi|212223465|ref|YP_002306701.1| - 0.021 15.2 0.2 16 5.9 0.0 3.6 2 2 2 4 4 4 0 Thioredoxin-like AhpC-TSA PF00578.21 gi|212223465|ref|YP_002306701.1| - 0.021 14.7 0.1 11 6.0 0.0 2.8 2 1 1 3 3 3 0 AhpC/TSA family CGGC PF08821.11 gi|212223465|ref|YP_002306701.1| - 0.092 12.9 0.1 1.3 9.2 0.0 2.1 2 0 0 2 2 2 0 CGGC domain TrbC_Ftype PF09673.10 gi|212223465|ref|YP_002306701.1| - 0.16 12.0 0.0 12 6.0 0.0 2.5 2 1 0 2 2 2 0 Type-F conjugative transfer system pilin assembly protein CRISPR_Cas2 PF09827.9 gi|212223466|ref|YP_002306702.1| - 1.2e-21 76.7 0.3 1.3e-21 76.5 0.3 1.0 1 0 0 1 1 1 1 CRISPR associated protein Cas2 GvpG PF05120.12 gi|212223466|ref|YP_002306702.1| - 0.051 13.6 0.0 0.066 13.2 0.0 1.1 1 0 0 1 1 1 0 Gas vesicle protein G Dna2 PF08696.11 gi|212223467|ref|YP_002306703.1| - 0.00049 20.0 0.0 0.00078 19.3 0.0 1.3 1 0 0 1 1 1 1 DNA replication factor Dna2 PDDEXK_1 PF12705.7 gi|212223467|ref|YP_002306703.1| - 0.0011 19.0 0.0 0.0027 17.7 0.0 1.6 1 1 0 1 1 1 1 PD-(D/E)XK nuclease superfamily CRISPR_Cas6 PF10040.9 gi|212223468|ref|YP_002306704.1| - 0.044 14.4 0.1 0.075 13.7 0.1 1.6 1 1 0 1 1 1 0 CRISPR-associated endoribonuclease Cas6 RAMPs PF03787.15 gi|212223469|ref|YP_002306705.1| - 0.012 15.7 0.1 0.053 13.6 0.1 2.0 1 1 0 1 1 1 0 RAMP superfamily DUF2972 PF11186.8 gi|212223470|ref|YP_002306706.1| - 0.039 13.9 1.1 0.37 10.7 1.1 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF2972) HD PF01966.22 gi|212223471|ref|YP_002306707.1| - 0.018 15.3 0.0 0.064 13.5 0.0 1.9 1 0 0 1 1 1 0 HD domain Cas_Cas6 PF01881.16 gi|212223472|ref|YP_002306708.1| - 1.1e-33 116.9 0.1 1.5e-33 116.4 0.1 1.2 1 0 0 1 1 1 1 CRISPR associated protein Cas6 ATP-grasp_5 PF13549.6 gi|212223473|ref|YP_002306709.1| - 5.2e-84 281.1 0.5 5.9e-84 281.0 0.5 1.0 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_2 PF08442.10 gi|212223473|ref|YP_002306709.1| - 5.9e-10 39.0 0.3 9.1e-10 38.4 0.3 1.4 1 1 0 1 1 1 1 ATP-grasp domain ATP-grasp PF02222.22 gi|212223473|ref|YP_002306709.1| - 5.3e-05 22.9 0.0 8.8e-05 22.1 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain GARS_A PF01071.19 gi|212223473|ref|YP_002306709.1| - 9.7e-05 22.2 0.3 0.00017 21.4 0.1 1.5 2 0 0 2 2 2 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain CPSase_L_D2 PF02786.17 gi|212223473|ref|YP_002306709.1| - 0.00028 20.4 0.2 0.00075 19.1 0.1 1.8 1 1 1 2 2 2 1 Carbamoyl-phosphate synthase L chain, ATP binding domain DUF5126 PF17166.4 gi|212223473|ref|YP_002306709.1| - 0.0095 15.8 0.0 0.017 15.0 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF5126) PMBR PF09373.10 gi|212223473|ref|YP_002306709.1| - 0.1 12.8 0.0 0.29 11.4 0.0 1.8 1 0 0 1 1 1 0 Pseudomurein-binding repeat Alpha-amyl_C2 PF07821.12 gi|212223474|ref|YP_002306710.1| - 0.0031 17.7 0.0 0.021 15.1 0.0 2.2 2 0 0 2 2 2 1 Alpha-amylase C-terminal beta-sheet domain Receptor_IA-2 PF11548.8 gi|212223474|ref|YP_002306710.1| - 0.059 13.4 0.0 0.13 12.2 0.0 1.6 1 0 0 1 1 1 0 Protein-tyrosine phosphatase receptor IA-2 DUF4139 PF13598.6 gi|212223474|ref|YP_002306710.1| - 0.086 12.5 0.1 3.8 7.2 0.0 2.3 1 1 0 2 2 2 0 Domain of unknown function (DUF4139) SWIM PF04434.17 gi|212223476|ref|YP_002306712.1| - 2.9e-06 26.8 0.1 4.5e-06 26.2 0.1 1.4 1 0 0 1 1 1 1 SWIM zinc finger Topoisom_bac PF01131.20 gi|212223477|ref|YP_002306713.1| - 1.2e-83 281.4 5.3 3.5e-83 279.9 5.3 1.7 1 1 0 1 1 1 1 DNA topoisomerase Toprim PF01751.22 gi|212223477|ref|YP_002306713.1| - 1.7e-29 102.1 0.1 1.1e-28 99.5 0.0 2.6 2 0 0 2 2 2 1 Toprim domain DEAD PF00270.29 gi|212223477|ref|YP_002306713.1| - 1.3e-12 47.9 0.0 3.8e-12 46.3 0.0 1.8 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|212223477|ref|YP_002306713.1| - 6.7e-11 42.5 0.3 0.00018 21.8 0.0 4.9 5 0 0 5 5 5 2 Helicase conserved C-terminal domain ResIII PF04851.15 gi|212223477|ref|YP_002306713.1| - 8.1e-09 35.7 0.2 4.3e-08 33.4 0.1 2.2 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit zf_Rg PF17915.1 gi|212223477|ref|YP_002306713.1| - 2.7e-07 29.9 1.2 2.7e-07 29.9 1.2 2.0 2 0 0 2 2 2 1 Reverse gyrase zinc finger Zn-ribbon_8 PF09723.10 gi|212223477|ref|YP_002306713.1| - 0.0011 19.0 0.8 0.0011 19.0 0.8 2.2 2 0 0 2 2 1 1 Zinc ribbon domain Toprim_4 PF13662.6 gi|212223477|ref|YP_002306713.1| - 0.0081 16.6 0.0 0.032 14.7 0.0 2.1 1 0 0 1 1 1 1 Toprim domain AAA_22 PF13401.6 gi|212223477|ref|YP_002306713.1| - 0.032 14.5 0.1 0.33 11.2 0.0 2.8 3 0 0 3 3 2 0 AAA domain HypA PF01155.19 gi|212223477|ref|YP_002306713.1| - 0.05 13.6 0.1 0.05 13.6 0.1 2.3 2 0 0 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA TackOD1 PF18551.1 gi|212223477|ref|YP_002306713.1| - 0.059 13.0 0.0 0.059 13.0 0.0 2.3 2 0 0 2 2 2 0 Thaumarchaeal output domain 1 DUF3375 PF11855.8 gi|212223477|ref|YP_002306713.1| - 0.074 12.0 4.6 0.021 13.7 0.5 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3375) Terminase_6 PF03237.15 gi|212223477|ref|YP_002306713.1| - 0.11 12.2 0.0 0.25 11.0 0.0 1.6 1 0 0 1 1 1 0 Terminase-like family FmdE PF02663.14 gi|212223477|ref|YP_002306713.1| - 0.12 12.4 4.3 0.84 9.7 0.0 3.8 4 0 0 4 4 3 0 FmdE, Molybdenum formylmethanofuran dehydrogenase operon AAA_25 PF13481.6 gi|212223477|ref|YP_002306713.1| - 0.12 11.9 0.8 2.4 7.7 0.1 2.9 2 1 1 3 3 3 0 AAA domain DUF2935 PF11155.8 gi|212223477|ref|YP_002306713.1| - 0.15 12.4 0.5 9.3 6.6 0.0 3.1 2 1 0 2 2 2 0 Domain of unknown function (DUF2935) HBB PF06777.11 gi|212223477|ref|YP_002306713.1| - 0.24 11.0 2.1 1.4 8.5 0.1 3.0 3 0 0 3 3 3 0 Helical and beta-bridge domain DUF35_N PF12172.8 gi|212223477|ref|YP_002306713.1| - 0.37 10.7 8.7 0.36 10.8 4.1 2.6 2 1 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) CCDC92 PF14916.6 gi|212223477|ref|YP_002306713.1| - 1.8 8.4 7.2 9.7 6.0 1.3 3.3 3 0 0 3 3 3 0 Coiled-coil domain of unknown function TF_Zn_Ribbon PF08271.12 gi|212223477|ref|YP_002306713.1| - 1.8 8.1 6.4 3.6 7.2 0.1 3.1 3 0 0 3 3 3 0 TFIIB zinc-binding OrfB_Zn_ribbon PF07282.11 gi|212223477|ref|YP_002306713.1| - 2.4 8.1 7.2 0.16 11.9 0.3 2.4 2 0 0 2 2 2 0 Putative transposase DNA-binding domain DZR PF12773.7 gi|212223477|ref|YP_002306713.1| - 5.3 7.1 7.1 1 9.4 0.3 2.2 2 0 0 2 2 2 0 Double zinc ribbon Radical_SAM PF04055.21 gi|212223477|ref|YP_002306713.1| - 7.1 7.0 9.9 9 6.6 0.0 4.4 5 1 1 6 6 3 0 Radical SAM superfamily TrmB PF01978.19 gi|212223478|ref|YP_002306714.1| - 1e-18 66.9 0.0 1.9e-18 66.1 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Regulator_TrmB PF11495.8 gi|212223478|ref|YP_002306714.1| - 8.1e-05 21.9 0.5 0.00011 21.4 0.5 1.2 1 0 0 1 1 1 1 Archaeal transcriptional regulator TrmB RraB PF06877.11 gi|212223478|ref|YP_002306714.1| - 0.0047 17.6 0.3 0.032 15.0 0.1 2.3 2 1 0 2 2 2 1 Regulator of ribonuclease activity B HGD-D PF06050.13 gi|212223478|ref|YP_002306714.1| - 0.014 15.1 0.3 0.019 14.7 0.3 1.2 1 0 0 1 1 1 0 2-hydroxyglutaryl-CoA dehydratase, D-component DUF2121 PF09894.9 gi|212223478|ref|YP_002306714.1| - 0.026 14.0 1.4 0.042 13.4 1.4 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2121) HTH_5 PF01022.20 gi|212223479|ref|YP_002306715.1| - 8.3e-06 25.6 0.0 1.1e-05 25.2 0.0 1.2 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_IclR PF09339.10 gi|212223479|ref|YP_002306715.1| - 9.1e-05 22.2 0.0 0.00011 21.9 0.0 1.1 1 0 0 1 1 1 1 IclR helix-turn-helix domain TrmB PF01978.19 gi|212223479|ref|YP_002306715.1| - 0.00011 22.1 0.1 0.00012 21.9 0.1 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_40 PF14493.6 gi|212223479|ref|YP_002306715.1| - 0.0037 17.7 0.0 0.0042 17.5 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.6 gi|212223479|ref|YP_002306715.1| - 0.0045 16.5 0.0 0.0065 16.0 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TFIIE_beta PF02186.15 gi|212223479|ref|YP_002306715.1| - 0.0073 16.6 1.8 0.027 14.7 1.8 1.8 1 1 0 1 1 1 1 TFIIE beta subunit core domain HTH_17 PF12728.7 gi|212223479|ref|YP_002306715.1| - 0.011 15.8 0.1 0.016 15.4 0.1 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain Sigma70_r4 PF04545.16 gi|212223479|ref|YP_002306715.1| - 0.017 14.6 0.1 0.023 14.2 0.1 1.3 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_29 PF13551.6 gi|212223479|ref|YP_002306715.1| - 0.019 14.9 0.0 0.02 14.9 0.0 1.1 1 0 0 1 1 1 0 Winged helix-turn helix MarR_2 PF12802.7 gi|212223479|ref|YP_002306715.1| - 0.036 13.9 0.0 0.042 13.8 0.0 1.1 1 0 0 1 1 1 0 MarR family Sigma70_r4_2 PF08281.12 gi|212223479|ref|YP_002306715.1| - 0.056 13.1 0.0 0.079 12.7 0.0 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 FaeA PF04703.12 gi|212223479|ref|YP_002306715.1| - 0.058 13.8 0.0 0.06 13.7 0.0 1.2 1 0 0 1 1 1 0 FaeA-like protein HRDC PF00570.23 gi|212223479|ref|YP_002306715.1| - 0.062 13.3 0.1 0.088 12.8 0.1 1.3 1 0 0 1 1 1 0 HRDC domain HTH_9 PF08221.11 gi|212223479|ref|YP_002306715.1| - 0.13 12.3 0.0 0.17 12.0 0.0 1.1 1 0 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain Auto_anti-p27 PF06677.12 gi|212223480|ref|YP_002306716.1| - 4.2e-13 49.2 0.8 7.3e-13 48.4 0.8 1.4 1 0 0 1 1 1 1 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zf-ribbon_3 PF13248.6 gi|212223480|ref|YP_002306716.1| - 0.0021 17.4 2.7 0.0047 16.3 2.7 1.6 1 1 0 1 1 1 1 zinc-ribbon domain DZR PF12773.7 gi|212223480|ref|YP_002306716.1| - 0.0036 17.3 0.9 0.0053 16.7 0.9 1.2 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.6 gi|212223480|ref|YP_002306716.1| - 0.008 15.9 2.7 0.02 14.6 2.8 1.6 1 1 0 1 1 1 1 zinc-ribbon domain Prok-RING_1 PF14446.6 gi|212223480|ref|YP_002306716.1| - 0.012 15.5 0.6 0.017 15.1 0.6 1.2 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 zf-NADH-PPase PF09297.11 gi|212223480|ref|YP_002306716.1| - 0.024 14.3 3.7 0.13 11.9 3.6 2.0 1 1 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain zf-LITAF-like PF10601.9 gi|212223480|ref|YP_002306716.1| - 0.026 14.8 1.1 0.68 10.2 0.0 2.1 1 1 1 2 2 2 0 LITAF-like zinc ribbon domain A2L_zn_ribbon PF08792.10 gi|212223480|ref|YP_002306716.1| - 0.036 13.8 0.7 0.062 13.0 0.7 1.4 1 0 0 1 1 1 0 A2L zinc ribbon domain zinc-ribbons_6 PF07191.12 gi|212223480|ref|YP_002306716.1| - 0.036 14.1 0.4 0.049 13.6 0.4 1.2 1 0 0 1 1 1 0 zinc-ribbons Zn_Tnp_IS1595 PF12760.7 gi|212223480|ref|YP_002306716.1| - 0.037 14.0 1.3 8.8 6.4 0.0 2.3 1 1 0 2 2 2 0 Transposase zinc-ribbon domain GHMP_kinases_C PF08544.13 gi|212223480|ref|YP_002306716.1| - 0.038 14.4 0.3 0.061 13.7 0.3 1.3 1 0 0 1 1 1 0 GHMP kinases C terminal Fzo_mitofusin PF04799.13 gi|212223480|ref|YP_002306716.1| - 0.077 12.5 0.1 0.097 12.2 0.1 1.1 1 0 0 1 1 1 0 fzo-like conserved region GFA PF04828.14 gi|212223480|ref|YP_002306716.1| - 0.12 12.8 0.8 1.7 9.0 0.0 2.1 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme Nudix_N_2 PF14803.6 gi|212223480|ref|YP_002306716.1| - 0.18 11.8 5.1 6.5 6.8 4.7 2.4 1 1 1 2 2 2 0 Nudix N-terminal HscB_4_cys PF18256.1 gi|212223480|ref|YP_002306716.1| - 0.21 11.5 1.8 0.34 10.7 1.8 1.4 1 0 0 1 1 1 0 Co-chaperone HscB tetracysteine metal binding motif RecR PF02132.15 gi|212223480|ref|YP_002306716.1| - 0.23 11.0 2.9 0.35 10.5 1.6 2.0 2 1 0 2 2 2 0 RecR protein DUF4349 PF14257.6 gi|212223480|ref|YP_002306716.1| - 1.1 8.7 3.1 1.5 8.2 3.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4349) Arginase PF00491.21 gi|212223481|ref|YP_002306717.1| - 6.4e-19 68.5 0.0 1.4e-18 67.4 0.0 1.5 1 1 0 1 1 1 1 Arginase family B277 PF17623.2 gi|212223481|ref|YP_002306717.1| - 0.3 10.1 2.2 0.93 8.5 0.4 2.0 2 0 0 2 2 2 0 Domain of unknown function OMPdecase PF00215.24 gi|212223482|ref|YP_002306718.1| - 1.3e-27 96.9 5.2 1.3e-27 96.9 5.2 1.6 2 0 0 2 2 2 1 Orotidine 5'-phosphate decarboxylase / HUMPS family SIS PF01380.22 gi|212223482|ref|YP_002306718.1| - 1.4e-21 76.7 0.1 3.7e-21 75.4 0.1 1.7 1 0 0 1 1 1 1 SIS domain SIS_2 PF13580.6 gi|212223482|ref|YP_002306718.1| - 4.9e-11 42.8 1.8 2.5e-08 34.0 0.1 2.7 1 1 1 2 2 2 2 SIS domain ThiG PF05690.14 gi|212223482|ref|YP_002306718.1| - 4.1e-06 26.3 0.7 7.7e-06 25.4 0.7 1.4 1 0 0 1 1 1 1 Thiazole biosynthesis protein ThiG DUF561 PF04481.12 gi|212223482|ref|YP_002306718.1| - 9.9e-05 21.6 0.5 0.00045 19.5 0.5 2.0 1 1 0 1 1 1 1 Protein of unknown function (DUF561) His_biosynth PF00977.21 gi|212223482|ref|YP_002306718.1| - 0.00013 21.6 0.6 0.00092 18.7 0.2 2.1 1 1 0 2 2 2 1 Histidine biosynthesis protein PEP_mutase PF13714.6 gi|212223482|ref|YP_002306718.1| - 0.00025 20.6 5.3 0.012 15.1 0.2 3.0 3 1 1 4 4 4 2 Phosphoenolpyruvate phosphomutase TMP-TENI PF02581.17 gi|212223482|ref|YP_002306718.1| - 0.00032 20.1 4.4 0.00073 18.9 3.0 2.3 2 1 0 2 2 2 1 Thiamine monophosphate synthase HMGL-like PF00682.19 gi|212223482|ref|YP_002306718.1| - 0.00084 19.0 2.8 0.075 12.6 0.4 2.3 1 1 1 2 2 2 2 HMGL-like IGPS PF00218.21 gi|212223482|ref|YP_002306718.1| - 0.0012 18.1 0.8 0.0044 16.2 0.8 2.1 1 1 0 1 1 1 1 Indole-3-glycerol phosphate synthase NanE PF04131.14 gi|212223482|ref|YP_002306718.1| - 0.0015 17.7 1.8 0.0035 16.6 1.8 1.6 1 0 0 1 1 1 1 Putative N-acetylmannosamine-6-phosphate epimerase NMO PF03060.15 gi|212223482|ref|YP_002306718.1| - 0.0017 17.8 1.6 0.0026 17.2 1.6 1.3 1 0 0 1 1 1 1 Nitronate monooxygenase QRPTase_C PF01729.19 gi|212223482|ref|YP_002306718.1| - 0.0022 17.8 3.6 0.089 12.6 0.2 2.5 1 1 1 2 2 2 1 Quinolinate phosphoribosyl transferase, C-terminal domain ADH_zinc_N PF00107.26 gi|212223482|ref|YP_002306718.1| - 0.0027 17.7 3.1 0.0053 16.7 0.3 2.6 2 2 1 3 3 3 2 Zinc-binding dehydrogenase DUF2529 PF10740.9 gi|212223482|ref|YP_002306718.1| - 0.0099 15.5 0.4 0.2 11.3 0.0 2.5 2 1 0 2 2 2 1 Domain of unknown function (DUF2529) 4HFCP_synth PF04476.13 gi|212223482|ref|YP_002306718.1| - 0.018 14.8 0.2 0.072 12.8 0.1 2.1 1 1 0 1 1 1 0 4-HFC-P synthase AP_endonuc_2 PF01261.24 gi|212223482|ref|YP_002306718.1| - 0.023 14.1 0.1 0.45 9.9 0.1 3.0 3 1 0 3 3 3 0 Xylose isomerase-like TIM barrel Ribul_P_3_epim PF00834.19 gi|212223482|ref|YP_002306718.1| - 0.027 13.9 1.5 0.079 12.3 1.4 1.9 1 1 0 1 1 1 0 Ribulose-phosphate 3 epimerase family Dus PF01207.17 gi|212223482|ref|YP_002306718.1| - 0.044 12.9 4.1 0.029 13.5 1.5 2.0 2 1 0 2 2 2 0 Dihydrouridine synthase (Dus) Radical_SAM PF04055.21 gi|212223482|ref|YP_002306718.1| - 0.046 14.1 1.8 1.2 9.4 1.5 2.9 2 1 0 2 2 2 0 Radical SAM superfamily HAD_2 PF13419.6 gi|212223484|ref|YP_002306720.1| - 1.1e-31 110.3 0.0 1.6e-31 109.8 0.0 1.3 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|212223484|ref|YP_002306720.1| - 3e-21 76.7 0.0 2.5e-19 70.4 0.0 2.1 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|212223484|ref|YP_002306720.1| - 4.1e-10 39.6 0.0 7.6e-10 38.7 0.0 1.4 1 0 0 1 1 1 1 HAD-hyrolase-like HAD PF12710.7 gi|212223484|ref|YP_002306720.1| - 1.8e-07 31.7 0.0 3.3e-07 30.9 0.0 1.5 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase PGP_phosphatase PF09419.10 gi|212223484|ref|YP_002306720.1| - 0.06 12.9 0.0 0.26 10.9 0.0 1.9 2 0 0 2 2 2 0 Mitochondrial PGP phosphatase Hydrolase_6 PF13344.6 gi|212223484|ref|YP_002306720.1| - 0.063 13.4 0.0 0.37 10.9 0.0 2.2 1 1 0 1 1 1 0 Haloacid dehalogenase-like hydrolase DUF4392 PF14336.6 gi|212223486|ref|YP_002306722.1| - 3.9e-67 226.8 0.0 1e-64 218.8 0.0 2.0 1 1 0 1 1 1 1 Domain of unknown function (DUF4392) HD PF01966.22 gi|212223487|ref|YP_002306723.1| - 6.1e-20 71.7 1.4 6.1e-20 71.7 1.4 1.9 2 0 0 2 2 2 1 HD domain Fe_dep_repr_C PF02742.15 gi|212223487|ref|YP_002306723.1| - 0.0042 17.1 0.9 0.18 11.9 0.0 2.5 2 0 0 2 2 2 1 Iron dependent repressor, metal binding and dimerisation domain DUF4202 PF13875.6 gi|212223487|ref|YP_002306723.1| - 0.019 14.9 0.4 0.058 13.3 0.0 2.0 3 0 0 3 3 3 0 Domain of unknown function (DUF4202) KH_5 PF13184.6 gi|212223488|ref|YP_002306724.1| - 4.1e-11 42.8 0.7 1.1e-10 41.4 0.7 1.8 1 0 0 1 1 1 1 NusA-like KH domain KH_2 PF07650.17 gi|212223488|ref|YP_002306724.1| - 1.5e-07 31.1 2.2 1.5e-07 31.1 2.2 1.6 2 0 0 2 2 2 1 KH domain Ribosomal_S7e PF01251.18 gi|212223488|ref|YP_002306724.1| - 1.1e-05 25.2 0.1 5.4e-05 23.0 0.0 2.0 1 1 0 2 2 2 1 Ribosomal protein S7e KH_1 PF00013.29 gi|212223488|ref|YP_002306724.1| - 2.4e-05 24.1 0.6 4.2e-05 23.3 0.6 1.5 1 0 0 1 1 1 1 KH domain KH_4 PF13083.6 gi|212223488|ref|YP_002306724.1| - 0.0065 16.3 2.5 0.016 15.1 0.7 2.2 2 0 0 2 2 2 1 KH domain tRNA-synt_2 PF00152.20 gi|212223489|ref|YP_002306725.1| - 3e-95 318.9 0.9 3.5e-95 318.7 0.9 1.0 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) tRNA_anti-codon PF01336.25 gi|212223489|ref|YP_002306725.1| - 1.2e-11 44.5 0.1 2.1e-11 43.7 0.1 1.4 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain DUF2770 PF10968.8 gi|212223489|ref|YP_002306725.1| - 3.7 7.6 5.5 1.8 8.6 0.7 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF2770) TRAP_beta PF05753.14 gi|212223490|ref|YP_002306726.1| - 1e-07 31.5 0.1 2.2e-07 30.4 0.1 1.5 1 0 0 1 1 1 1 Translocon-associated protein beta (TRAPB) DUF11 PF01345.18 gi|212223490|ref|YP_002306726.1| - 1.7e-05 25.0 5.0 0.0056 17.0 0.0 3.6 3 1 0 3 3 3 2 Domain of unknown function DUF11 BatD PF13584.6 gi|212223490|ref|YP_002306726.1| - 0.0065 15.3 0.0 0.21 10.4 0.0 2.4 2 0 0 2 2 2 1 Oxygen tolerance PTH2 PF01981.16 gi|212223491|ref|YP_002306727.1| - 2.1e-45 153.8 0.3 2.3e-45 153.6 0.3 1.0 1 0 0 1 1 1 1 Peptidyl-tRNA hydrolase PTH2 TruD PF01142.18 gi|212223492|ref|YP_002306728.1| - 2.8e-133 444.8 0.0 3.3e-133 444.5 0.0 1.0 1 0 0 1 1 1 1 tRNA pseudouridine synthase D (TruD) Hydrolase_3 PF08282.12 gi|212223493|ref|YP_002306729.1| - 2.3e-28 99.6 0.0 1.6e-17 64.1 0.0 2.1 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|212223493|ref|YP_002306729.1| - 6.5e-13 49.5 0.4 1.3e-10 41.9 0.4 3.2 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|212223493|ref|YP_002306729.1| - 4.8e-05 23.8 1.0 0.0047 17.3 0.1 2.9 1 1 1 3 3 3 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 gi|212223493|ref|YP_002306729.1| - 0.0051 16.9 0.0 0.0097 16.0 0.0 1.5 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase S6PP PF05116.13 gi|212223493|ref|YP_002306729.1| - 0.0092 15.5 0.0 0.34 10.4 0.0 2.1 2 0 0 2 2 2 1 Sucrose-6F-phosphate phosphohydrolase Hydrolase_6 PF13344.6 gi|212223493|ref|YP_002306729.1| - 0.02 15.0 0.0 0.04 14.0 0.0 1.5 1 0 0 1 1 1 0 Haloacid dehalogenase-like hydrolase Peptidase_M55 PF04951.13 gi|212223493|ref|YP_002306729.1| - 0.03 13.7 0.0 0.06 12.7 0.0 1.5 2 0 0 2 2 2 0 D-aminopeptidase Peptidase_M20 PF01546.28 gi|212223494|ref|YP_002306730.1| - 1.2e-36 126.4 2.1 1.7e-36 125.9 2.1 1.2 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 gi|212223494|ref|YP_002306730.1| - 7.3e-14 51.6 0.1 7.3e-14 51.6 0.1 2.1 3 0 0 3 3 3 1 Peptidase dimerisation domain DUF357 PF04010.13 gi|212223495|ref|YP_002306731.1| - 4.5e-30 103.5 1.3 5.3e-30 103.3 1.3 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF357) PHD_like PF12910.7 gi|212223495|ref|YP_002306731.1| - 0.016 15.2 0.7 0.019 15.0 0.7 1.1 1 0 0 1 1 1 0 Antitoxin of toxin-antitoxin, RelE / RelB, TA system DUF555 PF04475.12 gi|212223496|ref|YP_002306732.1| - 2.6e-40 136.8 1.4 3.1e-40 136.6 1.4 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF555) ArgJ PF01960.18 gi|212223496|ref|YP_002306732.1| - 0.074 11.8 0.6 0.42 9.3 0.1 1.9 2 0 0 2 2 2 0 ArgJ family FdhE PF04216.12 gi|212223496|ref|YP_002306732.1| - 0.12 12.2 0.0 0.18 11.6 0.0 1.2 1 0 0 1 1 1 0 Protein involved in formate dehydrogenase formation DUF2976 PF11190.8 gi|212223497|ref|YP_002306733.1| - 0.26 11.1 0.0 0.26 11.1 0.0 3.8 4 2 1 5 5 5 0 Protein of unknown function (DUF2976) LRR19-TM PF15176.6 gi|212223497|ref|YP_002306733.1| - 0.3 11.1 0.1 0.3 11.1 0.1 1.7 2 0 0 2 2 2 0 Leucine-rich repeat family 19 TM domain Bac_export_2 PF01312.19 gi|212223497|ref|YP_002306733.1| - 0.88 8.7 7.9 0.15 11.2 3.8 1.6 2 0 0 2 2 2 0 FlhB HrpN YscU SpaS Family CTP_synth_N PF06418.14 gi|212223498|ref|YP_002306734.1| - 1.7e-127 424.2 0.1 2.2e-127 423.9 0.1 1.1 1 0 0 1 1 1 1 CTP synthase N-terminus GATase PF00117.28 gi|212223498|ref|YP_002306734.1| - 5.4e-59 199.2 0.0 1.2e-58 198.1 0.0 1.6 2 0 0 2 2 2 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|212223498|ref|YP_002306734.1| - 7.5e-07 29.1 0.0 1.2e-05 25.2 0.0 2.7 2 1 0 2 2 2 1 Peptidase C26 CbiA PF01656.23 gi|212223498|ref|YP_002306734.1| - 0.019 15.0 0.0 0.026 14.6 0.0 1.6 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain GATase_3 PF07685.14 gi|212223498|ref|YP_002306734.1| - 0.091 12.3 0.0 0.19 11.3 0.0 1.5 1 0 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain DUF4013 PF13197.6 gi|212223499|ref|YP_002306735.1| - 0.0012 18.8 30.9 0.0012 18.8 30.9 3.3 1 1 2 3 3 3 1 Protein of unknown function (DUF4013) Ribosomal_S8e PF01201.22 gi|212223500|ref|YP_002306736.1| - 2.3e-33 115.3 3.2 2.6e-33 115.1 3.2 1.0 1 0 0 1 1 1 1 Ribosomal protein S8e DZR PF12773.7 gi|212223501|ref|YP_002306737.1| - 6.1e-10 39.0 9.5 8.7e-10 38.5 9.5 1.2 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_15 PF17032.5 gi|212223501|ref|YP_002306737.1| - 1e-06 29.4 6.2 0.0011 19.7 0.3 2.5 2 0 0 2 2 2 2 zinc-ribbon family zinc_ribbon_2 PF13240.6 gi|212223501|ref|YP_002306737.1| - 7.3e-06 25.5 17.2 0.00044 19.9 3.1 2.8 2 1 0 2 2 2 2 zinc-ribbon domain zf-RING_7 PF02591.15 gi|212223501|ref|YP_002306737.1| - 0.007 16.5 5.4 6.6 7.0 0.1 3.6 3 0 0 3 3 3 1 C4-type zinc ribbon domain zf-ribbon_3 PF13248.6 gi|212223501|ref|YP_002306737.1| - 0.014 14.8 3.0 0.014 14.8 3.0 3.2 1 1 2 3 3 3 0 zinc-ribbon domain PolC_DP2 PF03833.13 gi|212223501|ref|YP_002306737.1| - 0.023 12.6 0.2 0.029 12.3 0.2 1.1 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 zf-NADH-PPase PF09297.11 gi|212223501|ref|YP_002306737.1| - 0.063 13.0 5.0 4.8 6.9 1.9 3.3 2 1 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain DUF624 PF04854.14 gi|212223501|ref|YP_002306737.1| - 0.084 13.0 0.1 0.084 13.0 0.1 2.3 3 0 0 3 3 3 0 Protein of unknown function, DUF624 zinc-ribbons_6 PF07191.12 gi|212223501|ref|YP_002306737.1| - 0.085 12.8 7.5 0.14 12.2 3.5 2.2 1 1 1 2 2 2 0 zinc-ribbons A2L_zn_ribbon PF08792.10 gi|212223501|ref|YP_002306737.1| - 0.095 12.4 7.4 0.15 11.8 0.2 3.3 3 0 0 3 3 3 0 A2L zinc ribbon domain MbeD_MobD PF04899.12 gi|212223501|ref|YP_002306737.1| - 0.1 12.7 1.2 0.21 11.7 1.2 1.5 1 0 0 1 1 1 0 MbeD/MobD like Zn_ribbon_17 PF17120.5 gi|212223501|ref|YP_002306737.1| - 0.35 10.5 4.4 2 8.1 4.4 2.0 1 1 0 1 1 1 0 Zinc-ribbon, C4HC2 type HypA PF01155.19 gi|212223501|ref|YP_002306737.1| - 0.46 10.5 6.6 2.6 8.1 0.6 2.5 1 1 1 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Gram_pos_anchor PF00746.21 gi|212223501|ref|YP_002306737.1| - 0.52 10.3 2.3 15 5.7 0.2 2.6 2 0 0 2 2 2 0 LPXTG cell wall anchor motif Mem_trans PF03547.18 gi|212223501|ref|YP_002306737.1| - 0.57 8.5 4.4 0.98 7.7 4.4 1.3 1 0 0 1 1 1 0 Membrane transport protein Cys_rich_KTR PF14205.6 gi|212223501|ref|YP_002306737.1| - 0.78 9.6 2.9 1.6 8.6 2.9 1.5 1 0 0 1 1 1 0 Cysteine-rich KTR Nudix_N_2 PF14803.6 gi|212223501|ref|YP_002306737.1| - 0.84 9.6 10.9 1.8 8.6 0.5 3.8 3 1 1 4 4 4 0 Nudix N-terminal Occludin_ELL PF07303.13 gi|212223501|ref|YP_002306737.1| - 0.85 10.4 6.7 0.23 12.2 2.6 2.0 2 0 0 2 2 2 0 Occludin homology domain NinD PF17466.2 gi|212223501|ref|YP_002306737.1| - 0.85 9.7 3.8 1.7 8.8 3.8 1.5 1 0 0 1 1 1 0 Family of unknown function DNA_ligase_ZBD PF03119.16 gi|212223501|ref|YP_002306737.1| - 1.5 8.9 6.0 12 6.0 0.1 2.7 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain Zn-ribbon_8 PF09723.10 gi|212223501|ref|YP_002306737.1| - 1.5 9.0 9.8 5 7.3 1.3 3.0 1 1 1 2 2 2 0 Zinc ribbon domain Rubredoxin_2 PF18073.1 gi|212223501|ref|YP_002306737.1| - 3.1 7.6 10.5 3.7 7.3 0.9 2.6 2 1 0 2 2 2 0 Rubredoxin metal binding domain zf-LITAF-like PF10601.9 gi|212223501|ref|YP_002306737.1| - 3.6 7.9 7.9 30 5.0 4.6 3.5 2 1 0 2 2 2 0 LITAF-like zinc ribbon domain YhfH PF14149.6 gi|212223501|ref|YP_002306737.1| - 7.8 6.6 9.6 3.4 7.7 1.8 3.2 3 0 0 3 3 3 0 YhfH-like protein NOG1_N PF17835.1 gi|212223502|ref|YP_002306738.1| - 7.5e-58 195.0 2.0 1.5e-57 194.1 2.0 1.5 1 0 0 1 1 1 1 NOG1 N-terminal helical domain NOG1 PF06858.14 gi|212223502|ref|YP_002306738.1| - 4.4e-25 87.2 0.0 9.5e-25 86.1 0.0 1.6 1 0 0 1 1 1 1 Nucleolar GTP-binding protein 1 (NOG1) MMR_HSR1 PF01926.23 gi|212223502|ref|YP_002306738.1| - 3.4e-22 78.7 0.0 7.8e-22 77.5 0.0 1.7 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.18 gi|212223502|ref|YP_002306738.1| - 6.7e-19 67.9 0.0 1.1e-18 67.3 0.0 1.3 1 0 0 1 1 1 1 Ferrous iron transport protein B RsgA_GTPase PF03193.16 gi|212223502|ref|YP_002306738.1| - 1.2e-09 38.3 0.1 0.00062 19.7 0.0 2.9 2 1 0 2 2 2 2 RsgA GTPase Ras PF00071.22 gi|212223502|ref|YP_002306738.1| - 1.3e-06 28.1 0.0 5.7e-06 26.0 0.0 1.9 1 1 0 1 1 1 1 Ras family GTP_EFTU PF00009.27 gi|212223502|ref|YP_002306738.1| - 1.3e-06 28.1 0.5 0.22 11.0 0.0 3.7 3 1 1 4 4 4 2 Elongation factor Tu GTP binding domain PduV-EutP PF10662.9 gi|212223502|ref|YP_002306738.1| - 2.6e-06 27.3 0.0 2.2e-05 24.2 0.0 2.3 1 1 0 1 1 1 1 Ethanolamine utilisation - propanediol utilisation Arf PF00025.21 gi|212223502|ref|YP_002306738.1| - 1e-05 25.1 0.0 0.00013 21.5 0.0 2.2 1 1 0 1 1 1 1 ADP-ribosylation factor family MMR_HSR1_Xtn PF16897.5 gi|212223502|ref|YP_002306738.1| - 0.00023 21.2 0.1 0.0015 18.5 0.0 2.2 2 0 0 2 2 2 1 C-terminal region of MMR_HSR1 domain ATP_bind_1 PF03029.17 gi|212223502|ref|YP_002306738.1| - 0.00074 19.4 0.0 0.047 13.5 0.0 2.5 1 1 1 2 2 2 1 Conserved hypothetical ATP binding protein cobW PF02492.19 gi|212223502|ref|YP_002306738.1| - 0.0025 17.5 0.0 0.92 9.1 0.0 2.3 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain G-alpha PF00503.20 gi|212223502|ref|YP_002306738.1| - 0.0044 16.2 0.1 0.026 13.7 0.0 2.2 2 1 0 2 2 2 1 G-protein alpha subunit AAA_16 PF13191.6 gi|212223502|ref|YP_002306738.1| - 0.0045 17.4 0.0 0.025 15.0 0.0 2.3 2 1 0 2 2 2 1 AAA ATPase domain Gtr1_RagA PF04670.12 gi|212223502|ref|YP_002306738.1| - 0.0058 16.0 0.0 0.0091 15.4 0.0 1.3 1 0 0 1 1 1 1 Gtr1/RagA G protein conserved region Dynamin_N PF00350.23 gi|212223502|ref|YP_002306738.1| - 0.01 15.9 0.1 4.8 7.2 0.0 3.0 2 2 2 4 4 4 0 Dynamin family MeaB PF03308.16 gi|212223502|ref|YP_002306738.1| - 0.011 14.7 0.2 4 6.3 0.0 2.7 3 0 0 3 3 3 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_18 PF13238.6 gi|212223502|ref|YP_002306738.1| - 0.015 15.8 0.0 0.046 14.3 0.0 1.9 1 0 0 1 1 1 0 AAA domain Roc PF08477.13 gi|212223502|ref|YP_002306738.1| - 0.018 15.2 0.0 0.22 11.8 0.0 2.3 1 1 0 1 1 1 0 Ras of Complex, Roc, domain of DAPkinase AAA_22 PF13401.6 gi|212223502|ref|YP_002306738.1| - 0.023 14.9 0.0 0.1 12.9 0.0 2.2 1 1 0 1 1 1 0 AAA domain AAA_28 PF13521.6 gi|212223502|ref|YP_002306738.1| - 0.03 14.6 0.6 0.3 11.3 0.0 2.7 3 1 0 3 3 2 0 AAA domain KTI12 PF08433.10 gi|212223502|ref|YP_002306738.1| - 0.055 12.9 0.2 0.56 9.6 0.0 2.5 3 0 0 3 3 3 0 Chromatin associated protein KTI12 SRPRB PF09439.10 gi|212223502|ref|YP_002306738.1| - 0.074 12.5 0.0 0.15 11.5 0.0 1.6 1 0 0 1 1 1 0 Signal recognition particle receptor beta subunit AIG1 PF04548.16 gi|212223502|ref|YP_002306738.1| - 0.097 12.0 1.1 0.33 10.2 0.0 2.6 3 1 0 3 3 3 0 AIG1 family Ubiq_cyt_C_chap PF03981.12 gi|212223502|ref|YP_002306738.1| - 0.12 12.4 0.0 0.42 10.7 0.0 1.9 2 0 0 2 2 2 0 Ubiquinol-cytochrome C chaperone ABC_tran PF00005.27 gi|212223502|ref|YP_002306738.1| - 0.15 12.6 0.0 0.41 11.2 0.0 2.0 1 1 0 1 1 1 0 ABC transporter MnmE_helical PF12631.7 gi|212223502|ref|YP_002306738.1| - 0.16 12.1 0.0 0.3 11.2 0.0 1.6 1 1 0 1 1 1 0 MnmE helical domain AAA_29 PF13555.6 gi|212223502|ref|YP_002306738.1| - 0.19 11.5 0.0 0.42 10.4 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain OrfB_IS605 PF01385.19 gi|212223502|ref|YP_002306738.1| - 0.41 10.9 4.0 12 6.2 0.6 2.4 2 0 0 2 2 2 0 Probable transposase Phage_int_SAM_2 PF12834.7 gi|212223502|ref|YP_002306738.1| - 0.42 11.3 2.8 0.71 10.6 0.1 2.6 3 1 1 4 4 3 0 Phage integrase, N-terminal Lactamase_B PF00753.27 gi|212223503|ref|YP_002306739.1| - 8e-17 61.9 1.3 1.6e-16 61.0 1.0 1.6 1 1 1 2 2 2 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|212223503|ref|YP_002306739.1| - 2.1e-10 40.5 0.0 3.3e-10 39.8 0.0 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_6 PF16661.5 gi|212223503|ref|YP_002306739.1| - 0.0064 15.9 0.0 0.0098 15.3 0.0 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|212223503|ref|YP_002306739.1| - 0.015 15.2 0.0 0.025 14.5 0.0 1.3 1 0 0 1 1 1 0 Beta-lactamase superfamily domain BacA PF02673.18 gi|212223504|ref|YP_002306740.1| - 1.1e-27 97.4 8.7 1.3e-27 97.1 8.7 1.0 1 0 0 1 1 1 1 Bacitracin resistance protein BacA NTP_transferase PF00483.23 gi|212223505|ref|YP_002306741.1| - 6.8e-39 133.9 0.1 8.8e-39 133.6 0.1 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase Hexapep PF00132.24 gi|212223505|ref|YP_002306741.1| - 2.4e-21 74.6 27.5 2.9e-10 39.5 1.4 4.6 2 1 2 4 4 4 4 Bacterial transferase hexapeptide (six repeats) NTP_transf_3 PF12804.7 gi|212223505|ref|YP_002306741.1| - 1.1e-14 55.1 0.0 1.4e-14 54.8 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep_2 PF14602.6 gi|212223505|ref|YP_002306741.1| - 1.4e-13 50.3 19.9 5.5e-08 32.4 0.6 4.5 4 0 0 4 4 4 3 Hexapeptide repeat of succinyl-transferase IspD PF01128.19 gi|212223505|ref|YP_002306741.1| - 9.9e-05 22.2 0.0 0.00017 21.4 0.0 1.4 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Glycos_transf_2 PF00535.26 gi|212223505|ref|YP_002306741.1| - 0.0064 16.3 0.0 0.01 15.7 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 DUF835 PF05763.12 gi|212223506|ref|YP_002306742.1| - 6e-34 116.7 0.1 8.5e-34 116.2 0.1 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF835) CBS PF00571.28 gi|212223507|ref|YP_002306743.1| - 1.1e-40 137.8 15.4 2.5e-16 59.9 0.5 4.4 4 0 0 4 4 4 4 CBS domain Hrs_helical PF12210.8 gi|212223507|ref|YP_002306743.1| - 0.001 19.5 0.2 0.027 15.0 0.0 2.5 3 0 0 3 3 3 1 Hepatocyte growth factor-regulated tyrosine kinase substrate GAF PF01590.26 gi|212223507|ref|YP_002306743.1| - 0.014 16.0 0.0 0.66 10.6 0.0 2.3 2 0 0 2 2 2 0 GAF domain DUF1930 PF09122.10 gi|212223507|ref|YP_002306743.1| - 0.13 12.2 0.5 6.3 6.9 0.0 3.0 3 0 0 3 3 3 0 Domain of unknown function (DUF1930) Peptidase_M24 PF00557.24 gi|212223508|ref|YP_002306744.1| - 2.5e-44 151.5 0.1 2.9e-44 151.3 0.1 1.1 1 0 0 1 1 1 1 Metallopeptidase family M24 ATP-cone PF03477.16 gi|212223508|ref|YP_002306744.1| - 0.0025 18.4 0.1 1.3 9.7 0.0 2.4 2 0 0 2 2 2 2 ATP cone domain CNF1 PF05785.12 gi|212223508|ref|YP_002306744.1| - 0.036 13.3 0.0 0.063 12.5 0.0 1.3 1 0 0 1 1 1 0 Rho-activating domain of cytotoxic necrotizing factor TrkH PF02386.16 gi|212223509|ref|YP_002306745.1| - 3.4e-67 227.0 27.0 1.5e-66 224.9 27.0 1.7 1 1 0 1 1 1 1 Cation transport protein Fimbrial_K88 PF02432.15 gi|212223509|ref|YP_002306745.1| - 0.082 12.9 0.2 9 6.3 0.0 2.5 2 0 0 2 2 2 0 Fimbrial, major and minor subunit ABC_tran PF00005.27 gi|212223510|ref|YP_002306746.1| - 7.6e-25 88.0 0.0 1.2e-24 87.3 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|212223510|ref|YP_002306746.1| - 2.6e-07 30.8 0.9 0.0029 17.5 0.1 2.2 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|212223510|ref|YP_002306746.1| - 3.7e-06 26.5 0.0 4.2e-05 23.1 0.0 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain TniB PF05621.11 gi|212223510|ref|YP_002306746.1| - 0.00095 18.6 0.1 0.26 10.7 0.0 3.0 2 1 1 3 3 3 1 Bacterial TniB protein AAA_22 PF13401.6 gi|212223510|ref|YP_002306746.1| - 0.0011 19.3 0.6 0.032 14.5 0.6 2.3 1 1 0 1 1 1 1 AAA domain ABC_ATPase PF09818.9 gi|212223510|ref|YP_002306746.1| - 0.0012 17.8 0.5 0.18 10.5 0.0 3.0 2 1 0 2 2 2 1 Predicted ATPase of the ABC class AAA_29 PF13555.6 gi|212223510|ref|YP_002306746.1| - 0.0012 18.5 0.0 0.0025 17.5 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|212223510|ref|YP_002306746.1| - 0.01 16.2 0.1 0.015 15.7 0.1 1.6 1 1 0 1 1 1 0 AAA ATPase domain AAA_18 PF13238.6 gi|212223510|ref|YP_002306746.1| - 0.02 15.4 0.6 0.22 12.0 0.1 2.3 2 1 0 2 2 2 0 AAA domain AAA_25 PF13481.6 gi|212223510|ref|YP_002306746.1| - 0.036 13.6 0.5 0.55 9.8 0.0 2.4 2 1 0 2 2 2 0 AAA domain RsgA_GTPase PF03193.16 gi|212223510|ref|YP_002306746.1| - 0.048 13.6 0.0 0.11 12.4 0.0 1.5 1 0 0 1 1 1 0 RsgA GTPase ATP_bind_1 PF03029.17 gi|212223510|ref|YP_002306746.1| - 0.051 13.3 0.0 0.079 12.7 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein IstB_IS21 PF01695.17 gi|212223510|ref|YP_002306746.1| - 0.081 12.7 0.0 0.51 10.0 0.0 1.9 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_23 PF13476.6 gi|212223510|ref|YP_002306746.1| - 0.13 12.7 0.0 0.18 12.3 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_24 PF13479.6 gi|212223510|ref|YP_002306746.1| - 0.16 11.7 0.1 0.3 10.8 0.1 1.4 1 0 0 1 1 1 0 AAA domain Mg_chelatase PF01078.21 gi|212223510|ref|YP_002306746.1| - 0.18 11.1 0.1 0.35 10.2 0.1 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI Rad17 PF03215.15 gi|212223510|ref|YP_002306746.1| - 0.2 11.5 0.0 0.33 10.8 0.0 1.3 1 0 0 1 1 1 0 Rad17 P-loop domain DUF87 PF01935.17 gi|212223510|ref|YP_002306746.1| - 0.21 11.7 0.4 4.2 7.4 0.1 2.4 2 1 1 3 3 3 0 Helicase HerA, central domain TPR_19 PF14559.6 gi|212223511|ref|YP_002306747.1| - 0.00072 20.0 1.8 1.8 9.1 0.0 3.9 4 1 1 5 5 5 1 Tetratricopeptide repeat FTA4 PF13093.6 gi|212223511|ref|YP_002306747.1| - 0.0062 16.4 0.1 0.007 16.3 0.1 1.3 1 0 0 1 1 1 1 Kinetochore complex Fta4 of Sim4 subunit, or CENP-50 Glyco_hydro_3_C PF01915.22 gi|212223511|ref|YP_002306747.1| - 0.036 14.0 0.0 0.058 13.3 0.0 1.4 1 1 0 1 1 1 0 Glycosyl hydrolase family 3 C-terminal domain ANAPC3 PF12895.7 gi|212223511|ref|YP_002306747.1| - 0.043 14.0 0.1 1.6 9.0 0.0 2.7 2 1 0 2 2 2 0 Anaphase-promoting complex, cyclosome, subunit 3 ANAPC5 PF12862.7 gi|212223511|ref|YP_002306747.1| - 0.089 12.9 1.0 5.8 7.1 0.0 3.0 1 1 2 3 3 3 0 Anaphase-promoting complex subunit 5 TPR_12 PF13424.6 gi|212223511|ref|YP_002306747.1| - 0.09 13.1 6.2 0.93 9.8 0.2 4.1 4 1 1 5 5 5 0 Tetratricopeptide repeat TPR_6 PF13174.6 gi|212223511|ref|YP_002306747.1| - 0.13 13.0 0.7 95 4.0 0.0 3.9 3 0 0 3 3 3 0 Tetratricopeptide repeat TPR_10 PF13374.6 gi|212223511|ref|YP_002306747.1| - 1.5 8.8 4.2 4.8 7.2 0.2 3.6 5 0 0 5 5 5 0 Tetratricopeptide repeat Histone_HNS PF00816.21 gi|212223511|ref|YP_002306747.1| - 5 8.0 5.0 47 4.9 5.0 2.2 1 1 0 1 1 1 0 H-NS histone family CYTH PF01928.21 gi|212223512|ref|YP_002306748.1| - 8.5e-35 120.3 4.7 9.8e-35 120.1 4.7 1.0 1 0 0 1 1 1 1 CYTH domain Peptidase_M54 PF07998.11 gi|212223513|ref|YP_002306749.1| - 1.8e-30 106.4 0.0 2.5e-30 105.9 0.0 1.2 1 1 0 1 1 1 1 Peptidase family M54 Metallopep PF12044.8 gi|212223513|ref|YP_002306749.1| - 0.00028 19.6 0.9 0.00037 19.2 0.9 1.1 1 0 0 1 1 1 1 Putative peptidase family Peptidase_M66 PF10462.9 gi|212223513|ref|YP_002306749.1| - 0.0037 16.3 0.1 0.0052 15.8 0.1 1.1 1 0 0 1 1 1 1 Peptidase M66 Peptidase_M10 PF00413.24 gi|212223513|ref|YP_002306749.1| - 0.0075 16.1 0.1 0.011 15.6 0.1 1.2 1 0 0 1 1 1 1 Matrixin Reprolysin_3 PF13582.6 gi|212223513|ref|YP_002306749.1| - 0.021 15.3 0.0 0.026 15.0 0.0 1.2 1 0 0 1 1 1 0 Metallo-peptidase family M12B Reprolysin-like Reprolysin_5 PF13688.6 gi|212223513|ref|YP_002306749.1| - 0.056 13.6 0.0 0.058 13.5 0.0 1.2 1 0 0 1 1 1 0 Metallo-peptidase family M12 Peptidase_M43 PF05572.13 gi|212223513|ref|YP_002306749.1| - 0.071 13.0 0.0 0.11 12.4 0.0 1.3 1 0 0 1 1 1 0 Pregnancy-associated plasma protein-A DUF86 PF01934.17 gi|212223514|ref|YP_002306750.1| - 5.3e-12 45.6 1.2 6.3e-12 45.4 1.2 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF86 HEPN PF05168.14 gi|212223514|ref|YP_002306750.1| - 0.0053 16.9 1.2 0.0082 16.3 1.2 1.3 1 0 0 1 1 1 1 HEPN domain Peptidase_M42 PF05343.14 gi|212223515|ref|YP_002306751.1| - 2.4e-96 322.2 0.5 2.7e-96 322.0 0.5 1.0 1 0 0 1 1 1 1 M42 glutamyl aminopeptidase Peptidase_M20 PF01546.28 gi|212223515|ref|YP_002306751.1| - 8.2e-06 25.7 0.2 3.1e-05 23.8 0.2 1.9 1 1 0 1 1 1 1 Peptidase family M20/M25/M40 Peptidase_M18 PF02127.15 gi|212223515|ref|YP_002306751.1| - 0.00013 20.9 0.0 0.045 12.5 0.0 2.6 1 1 1 2 2 2 2 Aminopeptidase I zinc metalloprotease (M18) Peptidase_M28 PF04389.17 gi|212223515|ref|YP_002306751.1| - 0.0017 18.1 1.0 0.11 12.1 0.0 2.4 2 1 0 2 2 2 2 Peptidase family M28 CarboxypepD_reg PF13620.6 gi|212223516|ref|YP_002306752.1| - 2e-06 28.0 13.8 0.002 18.3 4.0 4.0 4 0 0 4 4 4 3 Carboxypeptidase regulatory-like domain MG4 PF17789.1 gi|212223516|ref|YP_002306752.1| - 5.3e-05 23.3 1.0 0.49 10.6 0.1 3.5 4 0 0 4 4 4 2 Macroglobulin domain MG4 Big_1 PF02369.16 gi|212223516|ref|YP_002306752.1| - 0.00012 22.1 0.8 0.00012 22.1 0.8 3.9 5 1 0 5 5 4 1 Bacterial Ig-like domain (group 1) Invasin_D3 PF09134.10 gi|212223516|ref|YP_002306752.1| - 0.00018 21.8 4.6 0.046 14.0 0.4 3.5 3 0 0 3 3 3 1 Invasin, domain 3 Wzt_C PF14524.6 gi|212223516|ref|YP_002306752.1| - 0.0056 16.7 1.1 0.099 12.7 0.0 2.7 2 0 0 2 2 2 1 Wzt C-terminal domain BiPBP_C PF06832.12 gi|212223516|ref|YP_002306752.1| - 0.0065 16.5 0.0 8.4 6.5 0.0 3.1 3 0 0 3 3 3 2 Penicillin-Binding Protein C-terminus Family Filamin PF00630.19 gi|212223516|ref|YP_002306752.1| - 0.01 16.7 0.1 0.079 13.8 0.1 2.5 2 1 0 2 2 2 0 Filamin/ABP280 repeat fn3_3 PF14686.6 gi|212223516|ref|YP_002306752.1| - 0.043 13.6 1.4 0.28 11.0 0.1 2.9 3 0 0 3 3 3 0 Polysaccharide lyase family 4, domain II MGC-24 PF05283.11 gi|212223516|ref|YP_002306752.1| - 0.14 12.6 0.3 0.24 11.9 0.3 1.3 1 0 0 1 1 1 0 Multi-glycosylated core protein 24 (MGC-24), sialomucin KH_4 PF13083.6 gi|212223516|ref|YP_002306752.1| - 0.16 11.9 0.0 0.36 10.7 0.0 1.6 1 0 0 1 1 1 0 KH domain DUF824 PF05688.11 gi|212223516|ref|YP_002306752.1| - 0.16 11.8 0.1 0.53 10.2 0.1 1.8 1 0 0 1 1 1 0 Salmonella repeat of unknown function (DUF824) Hjc PF01870.18 gi|212223517|ref|YP_002306753.1| - 5.1e-31 106.5 0.1 7.1e-31 106.1 0.1 1.2 1 0 0 1 1 1 1 Archaeal holliday junction resolvase (hjc) HicA_toxin PF07927.12 gi|212223517|ref|YP_002306753.1| - 0.001 19.1 0.0 0.0022 18.0 0.0 1.5 1 0 0 1 1 1 1 HicA toxin of bacterial toxin-antitoxin, Hexapep PF00132.24 gi|212223518|ref|YP_002306754.1| - 2.2e-16 58.9 12.2 5.4e-08 32.3 2.8 4.2 3 1 1 4 4 4 4 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 gi|212223518|ref|YP_002306754.1| - 8.9e-06 25.4 11.2 0.00023 20.8 3.0 3.2 2 1 0 3 3 3 2 Hexapeptide repeat of succinyl-transferase HupF_HypC PF01455.18 gi|212223518|ref|YP_002306754.1| - 0.86 9.8 3.0 16 5.8 0.3 3.7 3 1 1 4 4 4 0 HupF/HypC family Prenyltransf PF01255.19 gi|212223519|ref|YP_002306755.1| - 1.5e-82 276.5 0.0 1.7e-82 276.3 0.0 1.0 1 0 0 1 1 1 1 Putative undecaprenyl diphosphate synthase TAFH PF07531.14 gi|212223519|ref|YP_002306755.1| - 0.08 13.1 0.0 0.16 12.1 0.0 1.5 1 0 0 1 1 1 0 NHR1 homology to TAF Oxidored_nitro PF00148.19 gi|212223519|ref|YP_002306755.1| - 0.085 11.6 0.1 0.18 10.5 0.0 1.5 1 1 0 1 1 1 0 Nitrogenase component 1 type Oxidoreductase Seryl_tRNA_N PF02403.22 gi|212223519|ref|YP_002306755.1| - 0.12 12.6 0.0 0.2 11.9 0.0 1.5 1 1 0 1 1 1 0 Seryl-tRNA synthetase N-terminal domain DUF4657 PF15552.6 gi|212223519|ref|YP_002306755.1| - 0.26 10.8 0.0 0.36 10.4 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4657) TBPIP_N PF15517.6 gi|212223520|ref|YP_002306756.1| - 1.1e-46 157.0 3.2 1.8e-46 156.2 3.2 1.4 1 0 0 1 1 1 1 TBP-interacting protein N-terminus zf_UBZ PF18439.1 gi|212223520|ref|YP_002306756.1| - 0.006 16.2 0.2 0.006 16.2 0.2 2.0 2 0 0 2 2 2 1 Ubiquitin-Binding Zinc Finger zf_C2H2_13 PF18508.1 gi|212223520|ref|YP_002306756.1| - 0.013 15.1 0.2 0.039 13.5 0.2 1.8 1 1 1 2 2 2 0 Zinc finger domain zf-C2H2_4 PF13894.6 gi|212223520|ref|YP_002306756.1| - 0.014 16.1 0.1 0.058 14.2 0.1 2.1 1 0 0 1 1 1 0 C2H2-type zinc finger Desulfoferrod_N PF06397.12 gi|212223520|ref|YP_002306756.1| - 0.027 14.1 0.1 0.055 13.1 0.1 1.5 1 0 0 1 1 1 0 Desulfoferrodoxin, N-terminal domain tRNA-Thr_ED PF08915.11 gi|212223522|ref|YP_002306758.1| - 1.1e-56 190.7 0.5 2.4e-56 189.6 0.5 1.6 1 0 0 1 1 1 1 Archaea-specific editing domain of threonyl-tRNA synthetase HGTP_anticodon PF03129.20 gi|212223522|ref|YP_002306758.1| - 9.6e-25 86.6 5.0 3.1e-24 84.9 2.0 2.7 2 1 0 2 2 2 1 Anticodon binding domain tRNA-synt_2b PF00587.25 gi|212223522|ref|YP_002306758.1| - 5.2e-19 68.9 0.1 1.1e-18 67.8 0.1 1.6 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) RACo_linker PF17650.1 gi|212223522|ref|YP_002306758.1| - 0.06 13.2 0.0 2.7 7.9 0.0 2.7 2 0 0 2 2 2 0 RACo linker region ECR1_N PF14382.6 gi|212223523|ref|YP_002306759.1| - 1.7e-08 34.1 0.0 4.4e-08 32.8 0.0 1.8 1 0 0 1 1 1 1 Exosome complex exonuclease RRP4 N-terminal region EXOSC1 PF10447.9 gi|212223523|ref|YP_002306759.1| - 2.6e-07 31.2 3.4 9.3e-05 23.0 0.6 2.4 1 1 1 2 2 2 2 Exosome component EXOSC1/CSL4 S1 PF00575.23 gi|212223523|ref|YP_002306759.1| - 2.5e-06 27.7 1.4 0.033 14.5 0.2 2.4 2 0 0 2 2 2 2 S1 RNA binding domain Auto_anti-p27 PF06677.12 gi|212223523|ref|YP_002306759.1| - 0.002 18.2 1.7 0.0034 17.5 1.7 1.3 1 0 0 1 1 1 1 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) TRAM PF01938.20 gi|212223523|ref|YP_002306759.1| - 0.012 15.6 4.3 1.8 8.6 0.2 3.2 1 1 1 2 2 2 0 TRAM domain DZR PF12773.7 gi|212223523|ref|YP_002306759.1| - 0.023 14.7 0.4 0.039 14.0 0.4 1.2 1 0 0 1 1 1 0 Double zinc ribbon OrfB_Zn_ribbon PF07282.11 gi|212223523|ref|YP_002306759.1| - 0.053 13.5 1.1 0.1 12.5 0.6 1.7 2 0 0 2 2 2 0 Putative transposase DNA-binding domain PCB_OB PF17092.5 gi|212223523|ref|YP_002306759.1| - 0.069 13.9 0.1 0.12 13.1 0.1 1.4 1 0 0 1 1 1 0 Penicillin-binding protein OB-like domain Zn_Tnp_IS1595 PF12760.7 gi|212223523|ref|YP_002306759.1| - 0.099 12.6 1.3 0.19 11.7 0.1 1.9 2 0 0 2 2 2 0 Transposase zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|212223523|ref|YP_002306759.1| - 0.099 12.4 1.5 0.6 9.9 1.5 2.1 1 1 1 2 2 2 0 zinc-ribbon domain Prok-RING_1 PF14446.6 gi|212223523|ref|YP_002306759.1| - 0.17 11.8 0.3 0.32 10.9 0.3 1.4 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 zf-FPG_IleRS PF06827.14 gi|212223523|ref|YP_002306759.1| - 0.18 11.7 4.4 0.98 9.3 0.3 2.4 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS TF_Zn_Ribbon PF08271.12 gi|212223523|ref|YP_002306759.1| - 0.56 9.8 1.9 1.7 8.2 1.9 1.9 1 1 0 1 1 1 0 TFIIB zinc-binding Zn-ribbon_8 PF09723.10 gi|212223523|ref|YP_002306759.1| - 1.5 9.0 4.2 6 7.1 4.2 1.9 1 1 0 1 1 1 0 Zinc ribbon domain HscB_4_cys PF18256.1 gi|212223523|ref|YP_002306759.1| - 6.1 6.8 6.2 31 4.5 0.1 2.3 2 0 0 2 2 2 0 Co-chaperone HscB tetracysteine metal binding motif DUF2067 PF09840.9 gi|212223524|ref|YP_002306760.1| - 1.3e-49 168.3 2.6 1.5e-49 168.1 2.6 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2067) SLS PF14611.6 gi|212223524|ref|YP_002306760.1| - 0.084 12.7 0.3 0.17 11.7 0.2 1.5 1 1 0 1 1 1 0 Mitochondrial inner-membrane-bound regulator RNA_pol_L_2 PF13656.6 gi|212223525|ref|YP_002306761.1| - 4.5e-21 74.4 0.0 5.2e-21 74.2 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain RNA_pol_L PF01193.24 gi|212223525|ref|YP_002306761.1| - 3.3e-11 42.4 0.0 4.7e-11 42.0 0.0 1.3 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain Ribonucleas_3_2 PF11469.8 gi|212223527|ref|YP_002306763.1| - 2.4e-57 192.5 0.0 2.6e-57 192.4 0.0 1.0 1 0 0 1 1 1 1 Ribonuclease III AP_endonuc_2 PF01261.24 gi|212223528|ref|YP_002306764.1| - 1.4e-16 60.6 0.1 1.7e-16 60.3 0.1 1.2 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel Glyco_hydro_67M PF07488.12 gi|212223528|ref|YP_002306764.1| - 0.016 14.3 0.1 0.023 13.8 0.1 1.3 1 0 0 1 1 1 0 Glycosyl hydrolase family 67 middle domain MukF_C PF17193.4 gi|212223528|ref|YP_002306764.1| - 0.13 12.4 0.0 0.2 11.8 0.0 1.5 1 0 0 1 1 1 0 MukF C-terminal domain Peptidase_S49 PF01343.18 gi|212223529|ref|YP_002306765.1| - 2.1e-39 134.9 0.3 3e-39 134.4 0.3 1.2 1 0 0 1 1 1 1 Peptidase family S49 CLP_protease PF00574.23 gi|212223529|ref|YP_002306765.1| - 6.7e-07 29.4 0.5 1.4e-06 28.3 0.2 1.7 2 0 0 2 2 2 1 Clp protease SDH_sah PF01972.16 gi|212223529|ref|YP_002306765.1| - 0.0066 15.5 0.2 0.0099 14.9 0.2 1.2 1 0 0 1 1 1 1 Serine dehydrogenase proteinase DUF4131 PF13567.6 gi|212223529|ref|YP_002306765.1| - 0.08 12.6 0.0 0.14 11.8 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) SlyX PF04102.12 gi|212223529|ref|YP_002306765.1| - 0.15 12.7 0.1 0.28 11.8 0.1 1.3 1 0 0 1 1 1 0 SlyX Ph1570 PF09638.10 gi|212223530|ref|YP_002306766.1| - 3.8e-80 267.2 1.4 4.3e-80 267.0 1.4 1.0 1 0 0 1 1 1 1 Ph1570 protein SHOCT PF09851.9 gi|212223530|ref|YP_002306766.1| - 0.21 11.3 1.6 0.26 11.1 0.2 2.0 2 0 0 2 2 2 0 Short C-terminal domain AI-2E_transport PF01594.16 gi|212223531|ref|YP_002306767.1| - 9.5e-40 136.7 29.7 1.1e-39 136.5 29.7 1.0 1 0 0 1 1 1 1 AI-2E family transporter DUF1772 PF08592.11 gi|212223531|ref|YP_002306767.1| - 6.2 7.1 15.0 0.92 9.8 7.4 3.0 2 2 0 2 2 2 0 Domain of unknown function (DUF1772) Pterin_bind PF00809.22 gi|212223532|ref|YP_002306768.1| - 2e-63 214.4 0.0 2.2e-63 214.2 0.0 1.0 1 0 0 1 1 1 1 Pterin binding enzyme CdhD PF03599.16 gi|212223532|ref|YP_002306768.1| - 3.7e-05 22.6 0.3 5e-05 22.2 0.3 1.1 1 0 0 1 1 1 1 CO dehydrogenase/acetyl-CoA synthase delta subunit QRPTase_C PF01729.19 gi|212223532|ref|YP_002306768.1| - 0.012 15.4 0.3 0.022 14.5 0.3 1.4 1 0 0 1 1 1 0 Quinolinate phosphoribosyl transferase, C-terminal domain DUF561 PF04481.12 gi|212223532|ref|YP_002306768.1| - 0.035 13.3 0.3 0.099 11.8 0.1 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF561) PEP_mutase PF13714.6 gi|212223532|ref|YP_002306768.1| - 0.057 12.9 0.4 0.67 9.4 0.1 2.3 1 1 1 2 2 2 0 Phosphoenolpyruvate phosphomutase GHMP_kinases_C PF08544.13 gi|212223534|ref|YP_002306770.1| - 1.4e-05 25.4 0.1 4.9e-05 23.6 0.0 2.0 3 0 0 3 3 3 1 GHMP kinases C terminal GHMP_kinases_N PF00288.26 gi|212223534|ref|YP_002306770.1| - 5.3e-05 23.4 0.6 0.00012 22.2 0.3 1.8 2 0 0 2 2 2 1 GHMP kinases N terminal domain AGOG PF09171.10 gi|212223535|ref|YP_002306771.1| - 3.3e-81 272.3 0.0 4.5e-81 271.8 0.0 1.2 1 0 0 1 1 1 1 N-glycosylase/DNA lyase ABC2_membrane_2 PF12679.7 gi|212223536|ref|YP_002306772.1| - 2.9e-41 141.6 19.9 3.7e-41 141.3 19.9 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.7 gi|212223536|ref|YP_002306772.1| - 7.8e-13 48.2 21.6 7.8e-13 48.2 21.6 1.6 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane PF01061.24 gi|212223536|ref|YP_002306772.1| - 2.6e-09 36.8 26.7 1.1e-06 28.3 22.5 2.1 2 0 0 2 2 2 2 ABC-2 type transporter ABC2_membrane_4 PF12730.7 gi|212223536|ref|YP_002306772.1| - 2.7e-09 37.2 19.0 2.7e-09 37.2 19.0 2.2 2 1 1 3 3 3 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.6 gi|212223536|ref|YP_002306772.1| - 0.0027 17.3 22.4 0.0027 17.3 22.4 2.4 2 1 0 2 2 2 1 ABC-2 family transporter protein ABC_tran PF00005.27 gi|212223537|ref|YP_002306773.1| - 8.9e-30 104.0 0.0 1.3e-29 103.4 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|212223537|ref|YP_002306773.1| - 1.7e-10 41.2 0.5 1e-06 28.8 0.0 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 gi|212223537|ref|YP_002306773.1| - 3.4e-06 27.7 0.0 7.8e-06 26.5 0.0 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_29 PF13555.6 gi|212223537|ref|YP_002306773.1| - 0.0095 15.7 0.0 0.022 14.5 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|212223537|ref|YP_002306773.1| - 0.01 16.3 0.6 0.017 15.7 0.6 1.7 1 1 0 1 1 1 0 AAA domain SMC_N PF02463.19 gi|212223537|ref|YP_002306773.1| - 0.015 14.8 0.0 4.8 6.6 0.0 2.2 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_27 PF13514.6 gi|212223537|ref|YP_002306773.1| - 0.063 12.9 0.0 0.35 10.4 0.0 2.0 2 0 0 2 2 2 0 AAA domain UbiD PF01977.16 gi|212223538|ref|YP_002306774.1| - 1.4e-102 343.6 0.9 1.6e-102 343.4 0.9 1.0 1 0 0 1 1 1 1 3-octaprenyl-4-hydroxybenzoate carboxy-lyase ResIII PF04851.15 gi|212223539|ref|YP_002306775.1| - 4.5e-18 65.8 0.0 9.9e-18 64.7 0.0 1.6 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit Helicase_C PF00271.31 gi|212223539|ref|YP_002306775.1| - 2.1e-11 44.2 0.0 6.7e-11 42.5 0.0 1.9 1 0 0 1 1 1 1 Helicase conserved C-terminal domain SWI2_SNF2 PF18766.1 gi|212223539|ref|YP_002306775.1| - 1.7e-07 31.2 0.0 6.9e-07 29.2 0.0 2.0 2 1 0 2 2 2 1 SWI2/SNF2 ATPase DEAD PF00270.29 gi|212223539|ref|YP_002306775.1| - 1.6e-06 28.0 0.1 2.3e-05 24.2 0.1 2.6 2 1 0 2 2 2 1 DEAD/DEAH box helicase DUF2075 PF09848.9 gi|212223539|ref|YP_002306775.1| - 0.0033 16.7 0.0 0.0065 15.8 0.0 1.4 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) ERCC3_RAD25_C PF16203.5 gi|212223539|ref|YP_002306775.1| - 0.021 14.0 0.2 0.044 13.0 0.0 1.6 2 0 0 2 2 2 0 ERCC3/RAD25/XPB C-terminal helicase PseudoU_synth_1 PF01416.20 gi|212223540|ref|YP_002306776.1| - 1.7e-26 92.7 0.0 4.2e-21 75.4 0.0 2.1 2 0 0 2 2 2 2 tRNA pseudouridine synthase tRNA_synthFbeta PF17759.1 gi|212223541|ref|YP_002306777.1| - 2.2e-47 161.2 0.1 5.6e-47 159.9 0.1 1.7 1 1 1 2 2 2 1 Phenylalanyl tRNA synthetase beta chain CLM domain B3_4 PF03483.17 gi|212223541|ref|YP_002306777.1| - 2.7e-16 59.7 0.0 5.1e-16 58.8 0.0 1.4 1 0 0 1 1 1 1 B3/4 domain B5 PF03484.15 gi|212223541|ref|YP_002306777.1| - 7.5e-16 58.2 0.5 1e-14 54.6 0.4 2.6 2 0 0 2 2 2 1 tRNA synthetase B5 domain PhetRS_B1 PF18262.1 gi|212223541|ref|YP_002306777.1| - 7.9e-09 35.6 1.9 3.1e-07 30.5 0.0 3.6 4 1 0 4 4 4 1 Phe-tRNA synthetase beta subunit B1 domain tRNA-synt_2d PF01409.20 gi|212223541|ref|YP_002306777.1| - 0.00067 19.2 0.2 0.0028 17.2 0.2 2.1 1 1 0 1 1 1 1 tRNA synthetases class II core domain (F) RsbU_N PF08673.10 gi|212223541|ref|YP_002306777.1| - 0.073 13.2 0.9 11 6.1 0.0 3.0 3 0 0 3 3 3 0 Phosphoserine phosphatase RsbU, N-terminal domain CheR_N PF03705.15 gi|212223541|ref|YP_002306777.1| - 0.16 11.7 0.1 0.34 10.7 0.1 1.6 1 0 0 1 1 1 0 CheR methyltransferase, all-alpha domain tRNA-synt_2d PF01409.20 gi|212223542|ref|YP_002306778.1| - 6.1e-82 274.8 0.0 8.8e-82 274.3 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class II core domain (F) tRNA_synthFbeta PF17759.1 gi|212223542|ref|YP_002306778.1| - 1.2e-05 24.9 0.0 0.033 13.6 0.0 2.3 2 0 0 2 2 2 2 Phenylalanyl tRNA synthetase beta chain CLM domain tRNA-synt_2 PF00152.20 gi|212223542|ref|YP_002306778.1| - 0.00037 19.7 0.0 0.14 11.2 0.0 2.5 2 0 0 2 2 2 2 tRNA synthetases class II (D, K and N) MarR PF01047.22 gi|212223542|ref|YP_002306778.1| - 0.013 15.4 1.3 7.9 6.5 0.1 4.0 4 0 0 4 4 4 0 MarR family DUF2582 PF10771.9 gi|212223542|ref|YP_002306778.1| - 0.088 13.0 2.1 8.2 6.7 0.1 2.9 2 0 0 2 2 2 0 Winged helix-turn-helix domain (DUF2582) TrmB PF01978.19 gi|212223542|ref|YP_002306778.1| - 0.13 12.2 3.7 0.57 10.1 0.2 3.5 3 1 1 4 4 4 0 Sugar-specific transcriptional regulator TrmB TFIIE_alpha PF02002.17 gi|212223542|ref|YP_002306778.1| - 0.36 10.7 5.1 1.6 8.6 2.3 2.7 1 1 1 2 2 2 0 TFIIE alpha subunit ADH_N PF08240.12 gi|212223543|ref|YP_002306779.1| - 5.1e-36 122.9 1.3 9.5e-36 122.0 1.3 1.5 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.26 gi|212223543|ref|YP_002306779.1| - 1.4e-29 102.7 0.0 2.8e-29 101.7 0.0 1.5 1 0 0 1 1 1 1 Zinc-binding dehydrogenase Glu_dehyd_C PF16912.5 gi|212223543|ref|YP_002306779.1| - 6.3e-11 42.2 0.0 1.1e-10 41.4 0.0 1.3 1 1 0 1 1 1 1 Glucose dehydrogenase C-terminus ADH_zinc_N_2 PF13602.6 gi|212223543|ref|YP_002306779.1| - 3.1e-07 31.5 0.0 5.4e-07 30.7 0.0 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_N_2 PF16884.5 gi|212223543|ref|YP_002306779.1| - 0.039 13.9 0.0 0.083 12.8 0.0 1.5 1 0 0 1 1 1 0 N-terminal domain of oxidoreductase CbiA PF01656.23 gi|212223544|ref|YP_002306780.1| - 4.4e-20 72.0 0.0 6.6e-20 71.5 0.0 1.3 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|212223544|ref|YP_002306780.1| - 8e-15 55.2 0.0 1.7e-14 54.1 0.0 1.5 1 1 0 1 1 1 1 AAA domain ParA PF10609.9 gi|212223544|ref|YP_002306780.1| - 9e-12 45.0 0.0 1.3e-06 28.1 0.0 2.2 2 0 0 2 2 2 2 NUBPL iron-transfer P-loop NTPase Fer4_NifH PF00142.18 gi|212223544|ref|YP_002306780.1| - 7.3e-10 38.7 0.0 0.0011 18.5 0.0 2.1 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family CBP_BcsQ PF06564.12 gi|212223544|ref|YP_002306780.1| - 1.3e-08 34.7 0.0 7.3e-08 32.2 0.0 2.0 1 1 0 1 1 1 1 Cellulose biosynthesis protein BcsQ ArsA_ATPase PF02374.15 gi|212223544|ref|YP_002306780.1| - 2.6e-05 23.6 0.0 4.8e-05 22.7 0.0 1.7 1 1 0 1 1 1 1 Anion-transporting ATPase SRP54 PF00448.22 gi|212223544|ref|YP_002306780.1| - 0.0003 20.5 0.1 0.0011 18.6 0.1 1.8 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain KTI12 PF08433.10 gi|212223544|ref|YP_002306780.1| - 0.00092 18.7 0.0 0.0016 18.0 0.0 1.4 1 0 0 1 1 1 1 Chromatin associated protein KTI12 AAA_26 PF13500.6 gi|212223544|ref|YP_002306780.1| - 0.0015 18.4 2.3 0.0043 16.9 0.1 2.1 2 0 0 2 2 2 1 AAA domain APS_kinase PF01583.20 gi|212223544|ref|YP_002306780.1| - 0.0079 16.1 0.0 0.014 15.3 0.0 1.4 1 0 0 1 1 1 1 Adenylylsulphate kinase T2SSE PF00437.20 gi|212223544|ref|YP_002306780.1| - 0.027 13.5 0.1 0.051 12.6 0.1 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_30 PF13604.6 gi|212223544|ref|YP_002306780.1| - 0.036 13.8 0.0 0.048 13.4 0.0 1.3 1 0 0 1 1 1 0 AAA domain Zeta_toxin PF06414.12 gi|212223544|ref|YP_002306780.1| - 0.048 12.9 0.0 0.1 11.9 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin AAA_28 PF13521.6 gi|212223544|ref|YP_002306780.1| - 0.05 13.8 0.0 0.098 12.9 0.0 1.6 1 0 0 1 1 1 0 AAA domain MipZ PF09140.11 gi|212223544|ref|YP_002306780.1| - 0.055 12.7 0.1 0.14 11.5 0.1 1.7 1 1 0 1 1 1 0 ATPase MipZ AAA_22 PF13401.6 gi|212223544|ref|YP_002306780.1| - 0.062 13.6 0.0 0.17 12.1 0.0 1.7 2 0 0 2 2 2 0 AAA domain ATP_bind_1 PF03029.17 gi|212223544|ref|YP_002306780.1| - 0.072 12.9 0.3 0.34 10.7 0.1 2.1 2 1 1 3 3 3 0 Conserved hypothetical ATP binding protein NTPase_1 PF03266.15 gi|212223544|ref|YP_002306780.1| - 0.082 12.8 0.4 0.23 11.3 0.1 1.8 2 0 0 2 2 2 0 NTPase AAA_25 PF13481.6 gi|212223544|ref|YP_002306780.1| - 0.099 12.2 0.2 0.22 11.1 0.2 1.6 1 0 0 1 1 1 0 AAA domain MeaB PF03308.16 gi|212223544|ref|YP_002306780.1| - 0.1 11.6 0.1 0.17 10.8 0.1 1.3 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB GTP_EFTU PF00009.27 gi|212223544|ref|YP_002306780.1| - 0.12 11.9 0.0 12 5.3 0.0 2.1 2 0 0 2 2 2 0 Elongation factor Tu GTP binding domain VirC1 PF07015.11 gi|212223544|ref|YP_002306780.1| - 0.12 11.6 0.0 0.22 10.8 0.0 1.6 1 0 0 1 1 1 0 VirC1 protein DUF1611 PF07755.11 gi|212223544|ref|YP_002306780.1| - 0.16 11.2 0.6 0.64 9.3 0.0 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF1611_C) P-loop domain AAA_24 PF13479.6 gi|212223544|ref|YP_002306780.1| - 0.17 11.6 0.1 0.24 11.1 0.1 1.4 1 1 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|212223544|ref|YP_002306780.1| - 0.19 12.1 0.0 0.28 11.5 0.0 1.3 1 0 0 1 1 1 0 AAA ATPase domain HMG-CoA_red PF00368.18 gi|212223545|ref|YP_002306781.1| - 2.6e-139 464.3 1.5 2.9e-139 464.2 1.5 1.0 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A reductase GatB_N PF02934.15 gi|212223548|ref|YP_002306784.1| - 9.1e-67 225.3 0.0 1.5e-66 224.6 0.0 1.4 1 0 0 1 1 1 1 GatB/GatE catalytic domain GatB_Yqey PF02637.18 gi|212223548|ref|YP_002306784.1| - 3.2e-28 98.5 8.3 4.5e-28 98.0 6.5 2.2 2 0 0 2 2 2 1 GatB domain GAD PF02938.14 gi|212223548|ref|YP_002306784.1| - 4.7e-18 65.2 1.1 1e-17 64.1 0.2 2.1 2 0 0 2 2 2 1 GAD domain YqeY PF09424.10 gi|212223548|ref|YP_002306784.1| - 2.4e-11 43.9 1.5 1e-10 41.9 1.4 2.2 2 0 0 2 2 2 1 Yqey-like protein Ldh_1_C PF02866.18 gi|212223548|ref|YP_002306784.1| - 0.033 14.1 0.2 0.073 13.0 0.2 1.5 1 0 0 1 1 1 0 lactate/malate dehydrogenase, alpha/beta C-terminal domain DUF4473 PF14747.6 gi|212223548|ref|YP_002306784.1| - 0.11 13.1 0.0 17 6.1 0.1 3.4 3 1 0 3 3 3 0 Domain of unknown function (DUF4473) NAD_Gly3P_dh_N PF01210.23 gi|212223548|ref|YP_002306784.1| - 0.15 12.0 1.0 0.49 10.4 0.4 2.0 1 1 1 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus cwf21 PF08312.12 gi|212223548|ref|YP_002306784.1| - 0.94 9.7 5.8 68 3.7 5.2 2.9 2 1 0 2 2 2 0 cwf21 domain Asparaginase PF00710.20 gi|212223549|ref|YP_002306785.1| - 7.3e-63 211.6 0.0 2.6e-62 209.8 0.0 1.8 2 0 0 2 2 2 1 Asparaginase, N-terminal Asparaginase_C PF17763.1 gi|212223549|ref|YP_002306785.1| - 4.6e-39 133.2 0.1 1.6e-38 131.4 0.0 1.9 2 0 0 2 2 2 1 Glutaminase/Asparaginase C-terminal domain GatD_N PF18195.1 gi|212223549|ref|YP_002306785.1| - 1.4e-17 62.7 4.1 1.4e-17 62.7 4.1 1.6 2 0 0 2 2 2 1 GatD N-terminal domain HypA PF01155.19 gi|212223550|ref|YP_002306786.1| - 0.025 14.6 0.1 0.033 14.2 0.1 1.3 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DZR PF12773.7 gi|212223550|ref|YP_002306786.1| - 0.059 13.4 0.4 0.094 12.8 0.4 1.4 1 1 0 1 1 1 0 Double zinc ribbon Zn-ribbon_8 PF09723.10 gi|212223550|ref|YP_002306786.1| - 0.082 13.0 1.6 0.18 11.9 1.6 1.5 1 0 0 1 1 1 0 Zinc ribbon domain HTH_5 PF01022.20 gi|212223550|ref|YP_002306786.1| - 0.097 12.6 0.0 0.41 10.6 0.1 1.9 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family PuR_N PF09182.10 gi|212223550|ref|YP_002306786.1| - 0.13 12.2 0.1 0.23 11.4 0.1 1.5 1 1 0 1 1 1 0 Bacterial purine repressor, N-terminal THUMP PF02926.17 gi|212223551|ref|YP_002306787.1| - 2.8e-10 40.5 0.5 2.8e-10 40.5 0.5 1.9 2 1 1 3 3 3 1 THUMP domain Ribosomal_L21e PF01157.18 gi|212223552|ref|YP_002306788.1| - 1e-34 118.4 1.4 1.2e-34 118.2 1.4 1.1 1 0 0 1 1 1 1 Ribosomal protein L21e RNA_pol_Rpb4 PF03874.16 gi|212223553|ref|YP_002306789.1| - 6.5e-07 29.7 1.2 9.9e-07 29.1 1.2 1.2 1 1 0 1 1 1 1 RNA polymerase Rpb4 Borrelia_REV PF03978.13 gi|212223553|ref|YP_002306789.1| - 0.098 12.6 0.1 0.098 12.6 0.1 1.3 1 0 0 1 1 1 0 Borrelia burgdorferi REV protein DUF655 PF04919.12 gi|212223554|ref|YP_002306790.1| - 1.8e-68 230.1 0.3 2.3e-68 229.7 0.3 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF655) HHH_6 PF14579.6 gi|212223554|ref|YP_002306790.1| - 6.6e-06 26.3 0.0 1.4e-05 25.2 0.0 1.6 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_3 PF12836.7 gi|212223554|ref|YP_002306790.1| - 0.00029 21.0 0.0 0.0007 19.8 0.0 1.6 1 0 0 1 1 1 1 Helix-hairpin-helix motif RrnaAD PF00398.20 gi|212223555|ref|YP_002306791.1| - 5.8e-53 179.6 0.0 6.9e-53 179.4 0.0 1.0 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_25 PF13649.6 gi|212223555|ref|YP_002306791.1| - 4.1e-07 30.6 0.0 9.3e-07 29.5 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|212223555|ref|YP_002306791.1| - 7.9e-06 26.4 0.0 1.9e-05 25.2 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|212223555|ref|YP_002306791.1| - 0.0014 18.2 0.0 0.0027 17.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_23 PF13489.6 gi|212223555|ref|YP_002306791.1| - 0.0016 18.3 0.0 0.0022 17.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Met_10 PF02475.16 gi|212223555|ref|YP_002306791.1| - 0.008 15.9 0.0 0.014 15.2 0.0 1.4 1 0 0 1 1 1 1 Met-10+ like-protein PRMT5 PF05185.16 gi|212223555|ref|YP_002306791.1| - 0.0095 15.8 0.1 0.026 14.4 0.0 1.7 2 0 0 2 2 2 1 PRMT5 arginine-N-methyltransferase TrkA_N PF02254.18 gi|212223555|ref|YP_002306791.1| - 0.0098 16.1 0.0 0.085 13.1 0.0 2.3 2 0 0 2 2 2 1 TrkA-N domain PCMT PF01135.19 gi|212223555|ref|YP_002306791.1| - 0.024 14.4 0.0 0.056 13.2 0.0 1.5 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Cons_hypoth95 PF03602.15 gi|212223555|ref|YP_002306791.1| - 0.028 14.0 0.1 0.14 11.7 0.0 2.0 2 0 0 2 2 2 0 Conserved hypothetical protein 95 DUF43 PF01861.16 gi|212223555|ref|YP_002306791.1| - 0.044 13.0 0.0 0.063 12.5 0.0 1.2 1 0 0 1 1 1 0 Branched-chain polyamine synthase A C-terminal domain Rubrerythrin PF02915.17 gi|212223556|ref|YP_002306792.1| - 2.2e-12 47.5 4.1 4.3e-12 46.6 1.3 2.0 1 1 1 2 2 2 2 Rubrerythrin DUF1877 PF08974.10 gi|212223556|ref|YP_002306792.1| - 0.00079 19.5 0.8 0.24 11.5 0.4 2.2 2 0 0 2 2 2 2 Domain of unknown function (DUF1877) Coat_F PF07875.12 gi|212223556|ref|YP_002306792.1| - 0.011 15.9 1.2 0.87 9.9 0.0 3.0 2 1 1 3 3 3 0 Coat F domain Bcl-2_3 PF15286.6 gi|212223556|ref|YP_002306792.1| - 0.13 13.0 0.0 0.21 12.3 0.0 1.4 1 0 0 1 1 1 0 Apoptosis regulator M11, B cell 2 leukaemia/lymphoma like Radical_SAM PF04055.21 gi|212223557|ref|YP_002306793.1| - 6.5e-27 94.9 0.0 2.7e-26 92.9 0.0 2.1 2 0 0 2 2 2 1 Radical SAM superfamily HHH_3 PF12836.7 gi|212223557|ref|YP_002306793.1| - 0.00038 20.7 0.0 0.0035 17.6 0.0 2.3 2 0 0 2 2 2 1 Helix-hairpin-helix motif HHH_5 PF14520.6 gi|212223557|ref|YP_002306793.1| - 0.086 13.5 0.0 0.32 11.6 0.0 1.9 1 0 0 1 1 1 0 Helix-hairpin-helix domain TOM13 PF08219.11 gi|212223558|ref|YP_002306794.1| - 0.088 12.8 0.1 1.4 8.9 0.0 2.2 2 0 0 2 2 2 0 Outer membrane protein TOM13 Peptidase_C107 PF17222.3 gi|212223558|ref|YP_002306794.1| - 0.6 9.0 5.4 0.057 12.4 0.4 1.6 2 0 0 2 2 2 0 Viral cysteine endopeptidase C107 S_layer_N PF05123.12 gi|212223559|ref|YP_002306795.1| - 2e-37 129.6 2.0 2e-37 129.6 2.0 2.0 1 1 1 2 2 2 1 S-layer like family, N-terminal region S_layer_C PF05124.12 gi|212223559|ref|YP_002306795.1| - 1.8e-30 106.6 5.0 3.4e-30 105.7 5.0 1.4 1 0 0 1 1 1 1 S-layer like family, C-terminal region FAD_SOX PF18371.1 gi|212223560|ref|YP_002306796.1| - 0.047 14.1 0.2 4.5 7.7 0.1 3.3 4 0 0 4 4 4 0 Flavin adenine dinucleotide (FAD)-dependent sulfhydryl oxidase ACT_4 PF13291.6 gi|212223560|ref|YP_002306796.1| - 0.049 14.2 0.4 0.27 11.8 0.0 2.3 3 0 0 3 3 3 0 ACT domain Radical_SAM PF04055.21 gi|212223561|ref|YP_002306797.1| - 1.4e-21 77.6 0.7 1.5e-20 74.2 0.1 2.5 3 0 0 3 3 3 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|212223561|ref|YP_002306797.1| - 2.4e-05 24.6 0.0 5.2e-05 23.5 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain DiS_P_DiS PF06750.13 gi|212223561|ref|YP_002306797.1| - 0.00096 19.2 1.5 0.0022 18.1 0.0 2.2 2 0 0 2 2 2 1 Bacterial Peptidase A24 N-terminal domain ADK_lid PF05191.14 gi|212223561|ref|YP_002306797.1| - 0.0072 16.3 1.0 2.7 8.0 0.0 2.7 2 0 0 2 2 2 2 Adenylate kinase, active site lid DZR PF12773.7 gi|212223561|ref|YP_002306797.1| - 0.046 13.8 0.1 0.046 13.8 0.1 2.4 2 0 0 2 2 2 0 Double zinc ribbon Exotox-A_bind PF09101.10 gi|212223561|ref|YP_002306797.1| - 0.07 12.5 0.0 0.11 11.9 0.0 1.3 1 0 0 1 1 1 0 Exotoxin A binding zf_C2H2_13 PF18508.1 gi|212223561|ref|YP_002306797.1| - 0.071 12.7 1.6 19 4.9 0.3 3.3 3 0 0 3 3 3 0 Zinc finger domain zf-ribbon_3 PF13248.6 gi|212223561|ref|YP_002306797.1| - 0.4 10.2 11.0 0.41 10.1 0.2 3.3 3 0 0 3 3 3 0 zinc-ribbon domain zf-NADH-PPase PF09297.11 gi|212223561|ref|YP_002306797.1| - 0.57 9.9 0.0 0.57 9.9 0.0 2.6 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain zinc_ribbon_2 PF13240.6 gi|212223561|ref|YP_002306797.1| - 1.8 8.4 14.7 0.23 11.2 0.5 3.1 3 0 0 3 3 3 0 zinc-ribbon domain Polysacc_deac_1 PF01522.21 gi|212223562|ref|YP_002306798.1| - 4.5e-21 75.0 0.0 7e-21 74.4 0.0 1.3 1 0 0 1 1 1 1 Polysaccharide deacetylase DUF2194 PF09960.9 gi|212223562|ref|YP_002306798.1| - 0.0022 16.4 0.0 0.0028 16.1 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised protein conserved in bacteria (DUF2194) DUF3473 PF11959.8 gi|212223562|ref|YP_002306798.1| - 0.0058 16.6 0.1 0.019 15.0 0.1 1.9 1 1 0 1 1 1 1 Domain of unknown function (DUF3473) DUF2334 PF10096.9 gi|212223562|ref|YP_002306798.1| - 0.014 15.0 0.0 0.024 14.3 0.0 1.5 1 1 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2334) Glyco_transf_4 PF13439.6 gi|212223563|ref|YP_002306799.1| - 8.7e-29 100.7 1.4 1.3e-28 100.1 1.4 1.3 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glycos_transf_1 PF00534.20 gi|212223563|ref|YP_002306799.1| - 5.8e-26 91.1 0.0 4e-24 85.1 0.0 2.2 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|212223563|ref|YP_002306799.1| - 2.2e-17 63.7 0.2 3.8e-16 59.7 0.0 2.6 2 1 1 3 3 3 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.6 gi|212223563|ref|YP_002306799.1| - 1.2e-13 51.8 0.0 2.1e-13 51.0 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.6 gi|212223563|ref|YP_002306799.1| - 1.4e-11 44.6 0.0 3.4e-11 43.4 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.6 gi|212223563|ref|YP_002306799.1| - 2.9e-06 27.4 0.0 5.2e-06 26.5 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glyco_transf_5 PF08323.11 gi|212223563|ref|YP_002306799.1| - 0.06 13.0 0.0 0.099 12.3 0.0 1.4 1 1 0 1 1 1 0 Starch synthase catalytic domain Cas_DxTHG PF09455.10 gi|212223563|ref|YP_002306799.1| - 0.16 11.5 0.0 0.29 10.7 0.0 1.4 1 0 0 1 1 1 0 CRISPR-associated (Cas) DxTHG family LPG_synthase_TM PF03706.13 gi|212223564|ref|YP_002306800.1| - 2.5e-39 135.6 27.7 6.3e-39 134.3 27.7 1.6 1 1 0 1 1 1 1 Lysylphosphatidylglycerol synthase TM region AIRS PF00586.24 gi|212223565|ref|YP_002306801.1| - 3.7e-17 62.7 0.2 6.7e-17 61.9 0.2 1.4 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain AIRS_C PF02769.22 gi|212223565|ref|YP_002306801.1| - 6.2e-09 36.2 0.0 9.9e-09 35.5 0.0 1.3 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain Pmp3 PF01679.17 gi|212223566|ref|YP_002306802.1| - 0.12 12.6 0.2 0.12 12.6 0.2 3.3 4 0 0 4 4 4 0 Proteolipid membrane potential modulator PHP_C PF13263.6 gi|212223567|ref|YP_002306803.1| - 9.4e-06 25.3 0.0 2.5e-05 23.9 0.0 1.7 1 0 0 1 1 1 1 PHP-associated PHP PF02811.19 gi|212223567|ref|YP_002306803.1| - 0.0053 17.1 0.0 0.0093 16.3 0.0 1.7 1 1 0 1 1 1 1 PHP domain DUF4379 PF14311.6 gi|212223567|ref|YP_002306803.1| - 0.023 15.1 0.5 0.057 13.8 0.5 1.6 1 0 0 1 1 1 0 Probable Zinc-ribbon domain zf-C3HC4_3 PF13920.6 gi|212223567|ref|YP_002306803.1| - 0.12 12.3 0.7 0.19 11.6 0.7 1.3 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) HypA PF01155.19 gi|212223567|ref|YP_002306803.1| - 0.16 12.0 0.7 0.35 10.9 0.1 1.8 2 0 0 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zinc_ribbon_10 PF10058.9 gi|212223567|ref|YP_002306803.1| - 0.33 10.7 2.3 0.76 9.5 2.3 1.6 1 0 0 1 1 1 0 Predicted integral membrane zinc-ribbon metal-binding protein zinc_ribbon_4 PF13717.6 gi|212223567|ref|YP_002306803.1| - 4.3 7.3 4.8 14 5.7 4.8 1.9 1 1 0 1 1 1 0 zinc-ribbon domain SHOCT PF09851.9 gi|212223568|ref|YP_002306804.1| - 0.11 12.3 4.7 0.21 11.4 4.7 1.5 1 0 0 1 1 1 0 Short C-terminal domain Voltage_CLC PF00654.20 gi|212223569|ref|YP_002306805.1| - 4.5e-85 286.0 40.5 4.5e-85 286.0 40.5 2.0 2 0 0 2 2 2 1 Voltage gated chloride channel CBS PF00571.28 gi|212223569|ref|YP_002306805.1| - 5.4e-21 74.8 0.3 4.7e-11 43.0 0.3 2.7 2 0 0 2 2 2 2 CBS domain Na_H_Exchanger PF00999.21 gi|212223570|ref|YP_002306806.1| - 1.4e-54 185.4 43.8 1.8e-54 185.0 43.8 1.0 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family Arginase PF00491.21 gi|212223571|ref|YP_002306807.1| - 6.1e-64 216.2 0.0 7.2e-64 216.0 0.0 1.0 1 0 0 1 1 1 1 Arginase family eIF-5a PF01287.20 gi|212223572|ref|YP_002306808.1| - 7.5e-11 42.0 0.8 1.1e-10 41.4 0.8 1.3 1 0 0 1 1 1 1 Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold EFP_N PF08207.12 gi|212223572|ref|YP_002306808.1| - 0.00029 20.8 0.1 0.00071 19.6 0.0 1.8 2 0 0 2 2 2 1 Elongation factor P (EF-P) KOW-like domain EFP PF01132.20 gi|212223572|ref|YP_002306808.1| - 0.011 15.8 0.3 0.021 14.8 0.3 1.4 1 0 0 1 1 1 0 Elongation factor P (EF-P) OB domain Herpes_UL32 PF06070.11 gi|212223572|ref|YP_002306808.1| - 0.13 9.9 0.0 0.14 9.9 0.0 1.0 1 0 0 1 1 1 0 Herpesvirus large structural phosphoprotein UL32 Yip1 PF04893.17 gi|212223573|ref|YP_002306809.1| - 0.0037 17.0 15.9 0.0037 17.0 15.9 4.5 1 1 1 3 3 3 1 Yip1 domain DUF5124 PF17160.4 gi|212223573|ref|YP_002306809.1| - 0.041 14.7 0.0 0.076 13.8 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF5124) Spore_III_AF PF09581.10 gi|212223573|ref|YP_002306809.1| - 2.5 8.1 5.0 2.2 8.2 3.3 1.7 2 0 0 2 2 2 0 Stage III sporulation protein AF (Spore_III_AF) EMG1 PF03587.14 gi|212223574|ref|YP_002306810.1| - 3.2e-51 173.8 0.0 3.6e-51 173.6 0.0 1.0 1 0 0 1 1 1 1 EMG1/NEP1 methyltransferase Tachykinin PF02202.16 gi|212223574|ref|YP_002306810.1| - 0.61 10.1 1.8 1.5 9.0 0.2 2.3 2 0 0 2 2 2 0 Tachykinin family Sacchrp_dh_C PF16653.5 gi|212223575|ref|YP_002306811.1| - 3.2e-32 112.7 0.0 4.4e-32 112.2 0.0 1.2 1 0 0 1 1 1 1 Saccharopine dehydrogenase C-terminal domain Sacchrp_dh_NADP PF03435.18 gi|212223575|ref|YP_002306811.1| - 9.3e-20 71.2 0.0 1.6e-19 70.4 0.0 1.4 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain AlaDh_PNT_C PF01262.21 gi|212223575|ref|YP_002306811.1| - 9.7e-05 21.8 0.0 0.00015 21.1 0.0 1.3 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain Shikimate_DH PF01488.20 gi|212223575|ref|YP_002306811.1| - 0.00015 21.9 0.0 0.00023 21.2 0.0 1.4 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase TrkA_N PF02254.18 gi|212223575|ref|YP_002306811.1| - 0.00015 22.0 0.0 0.00044 20.5 0.0 1.9 1 1 0 1 1 1 1 TrkA-N domain NAD_binding_10 PF13460.6 gi|212223575|ref|YP_002306811.1| - 0.0013 18.7 0.0 0.0024 17.8 0.0 1.5 1 0 0 1 1 1 1 NAD(P)H-binding F420_oxidored PF03807.17 gi|212223575|ref|YP_002306811.1| - 0.0024 18.4 0.0 0.009 16.6 0.0 2.0 1 1 1 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent ApbA PF02558.16 gi|212223575|ref|YP_002306811.1| - 0.0031 17.2 0.0 0.0061 16.2 0.0 1.5 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA GFO_IDH_MocA PF01408.22 gi|212223575|ref|YP_002306811.1| - 0.004 18.0 0.0 0.008 17.0 0.0 1.5 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold DapB_N PF01113.20 gi|212223575|ref|YP_002306811.1| - 0.032 14.3 0.0 0.069 13.3 0.0 1.6 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus 3HCDH_N PF02737.18 gi|212223575|ref|YP_002306811.1| - 0.045 13.6 0.0 0.16 11.8 0.0 2.0 2 1 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Semialdhyde_dh PF01118.24 gi|212223575|ref|YP_002306811.1| - 0.053 14.0 0.0 0.11 13.0 0.0 1.5 1 0 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain IlvN PF07991.12 gi|212223575|ref|YP_002306811.1| - 0.077 12.6 0.0 0.19 11.3 0.0 1.7 2 0 0 2 2 2 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain GARS_N PF02844.15 gi|212223575|ref|YP_002306811.1| - 0.091 13.6 0.0 0.25 12.1 0.0 1.9 1 1 0 1 1 1 0 Phosphoribosylglycinamide synthetase, N domain Metallophos PF00149.28 gi|212223576|ref|YP_002306812.1| - 1.9e-06 28.6 0.0 2.1e-06 28.4 0.0 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|212223576|ref|YP_002306812.1| - 3.4e-05 24.1 0.0 4.3e-05 23.8 0.0 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain DUF2183 PF09949.9 gi|212223576|ref|YP_002306812.1| - 0.11 12.9 0.0 0.16 12.3 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2183) Glyoxalase_3 PF13468.6 gi|212223577|ref|YP_002306813.1| - 0.16 12.1 0.0 0.24 11.5 0.0 1.2 1 0 0 1 1 1 0 Glyoxalase-like domain DUF257 PF03192.13 gi|212223578|ref|YP_002306814.1| - 1.3e-41 142.7 0.6 1.4e-41 142.5 0.6 1.0 1 0 0 1 1 1 1 Pyrococcus protein of unknown function, DUF257 DUF835 PF05763.12 gi|212223578|ref|YP_002306814.1| - 0.0034 17.1 0.2 2.4 7.9 0.0 2.3 2 0 0 2 2 2 2 Protein of unknown function (DUF835) RD3 PF14473.6 gi|212223578|ref|YP_002306814.1| - 0.098 12.5 0.1 0.16 11.8 0.1 1.3 1 0 0 1 1 1 0 RD3 protein DUF257 PF03192.13 gi|212223579|ref|YP_002306815.1| - 1.1e-17 64.5 0.2 1.3e-17 64.3 0.2 1.1 1 0 0 1 1 1 1 Pyrococcus protein of unknown function, DUF257 Methyltr_RsmB-F PF01189.17 gi|212223580|ref|YP_002306816.1| - 1.7e-58 197.6 0.0 2.1e-58 197.3 0.0 1.1 1 0 0 1 1 1 1 16S rRNA methyltransferase RsmB/F Methyltr_RsmF_N PF17125.5 gi|212223580|ref|YP_002306816.1| - 1.3e-19 70.5 0.0 2.9e-19 69.4 0.0 1.5 1 0 0 1 1 1 1 N-terminal domain of 16S rRNA methyltransferase RsmF FtsJ PF01728.19 gi|212223580|ref|YP_002306816.1| - 7.1e-08 32.8 0.0 1.1e-07 32.2 0.0 1.2 1 0 0 1 1 1 1 FtsJ-like methyltransferase Methyltransf_31 PF13847.6 gi|212223580|ref|YP_002306816.1| - 5.1e-07 29.6 0.0 7.7e-07 29.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain POR PF01558.18 gi|212223580|ref|YP_002306816.1| - 0.15 12.1 0.0 0.26 11.4 0.0 1.4 1 0 0 1 1 1 0 Pyruvate ferredoxin/flavodoxin oxidoreductase OTCace PF00185.24 gi|212223581|ref|YP_002306817.1| - 7.1e-66 221.1 0.1 9.9e-66 220.7 0.1 1.2 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain OTCace_N PF02729.21 gi|212223581|ref|YP_002306817.1| - 3.5e-51 173.1 0.0 1.5e-50 171.1 0.0 1.9 2 0 0 2 2 2 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain DUF996 PF06195.13 gi|212223582|ref|YP_002306818.1| - 3.6e-25 88.8 24.8 6.1e-25 88.1 23.7 1.8 1 1 0 1 1 1 1 Protein of unknown function (DUF996) DUF4064 PF13273.6 gi|212223582|ref|YP_002306818.1| - 0.0041 17.4 11.8 0.0041 17.4 11.8 3.2 1 1 1 2 2 2 1 Protein of unknown function (DUF4064) EcsB PF05975.12 gi|212223582|ref|YP_002306818.1| - 0.013 14.4 8.9 0.019 13.8 8.9 1.2 1 0 0 1 1 1 0 Bacterial ABC transporter protein EcsB DUF3262 PF11660.8 gi|212223582|ref|YP_002306818.1| - 0.031 14.7 4.2 0.031 14.7 4.2 2.6 1 1 2 3 3 3 0 Protein of unknown function (DUF3262) XK-related PF09815.9 gi|212223582|ref|YP_002306818.1| - 0.096 11.7 5.7 0.11 11.5 5.7 1.1 1 0 0 1 1 1 0 XK-related protein Yip1 PF04893.17 gi|212223582|ref|YP_002306818.1| - 0.26 11.0 25.3 0.14 11.8 12.5 2.1 1 1 1 2 2 2 0 Yip1 domain EI24 PF07264.11 gi|212223582|ref|YP_002306818.1| - 0.38 11.0 13.8 0.52 10.5 13.8 1.2 1 0 0 1 1 1 0 Etoposide-induced protein 2.4 (EI24) DUF973 PF06157.11 gi|212223582|ref|YP_002306818.1| - 0.49 9.4 27.4 1.3 8.1 8.5 2.6 1 1 1 2 2 2 0 Protein of unknown function (DUF973) TssN PF17555.2 gi|212223582|ref|YP_002306818.1| - 1.1 8.5 11.0 1.4 8.2 10.5 1.4 1 1 0 1 1 1 0 Type VI secretion system, TssN Thy1 PF02511.15 gi|212223583|ref|YP_002306819.1| - 4.2e-62 209.3 0.9 5e-62 209.1 0.9 1.0 1 0 0 1 1 1 1 Thymidylate synthase complementing protein Swi5 PF07061.11 gi|212223583|ref|YP_002306819.1| - 0.087 12.9 0.1 0.6 10.2 0.0 2.1 2 0 0 2 2 2 0 Swi5 ACT_7 PF13840.6 gi|212223584|ref|YP_002306820.1| - 4e-15 55.4 0.8 8e-13 48.0 0.0 2.3 2 0 0 2 2 2 2 ACT domain ACT PF01842.25 gi|212223584|ref|YP_002306820.1| - 0.00067 19.4 0.2 0.0084 15.9 0.0 2.8 2 2 1 3 3 3 1 ACT domain Na_H_antiporter PF03553.14 gi|212223585|ref|YP_002306821.1| - 4.6e-75 252.7 27.4 4.6e-75 252.7 27.4 2.2 2 1 0 2 2 2 1 Na+/H+ antiporter family MatC_N PF07158.11 gi|212223585|ref|YP_002306821.1| - 0.0022 18.0 10.2 0.0022 18.0 10.2 2.5 3 0 0 3 3 3 1 Dicarboxylate carrier protein MatC N-terminus DUF3211 PF11485.8 gi|212223586|ref|YP_002306822.1| - 0.031 14.5 0.0 0.058 13.6 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3211) HIT PF01230.23 gi|212223587|ref|YP_002306823.1| - 1.3e-13 51.5 0.0 2e-13 50.9 0.0 1.3 1 0 0 1 1 1 1 HIT domain DcpS_C PF11969.8 gi|212223587|ref|YP_002306823.1| - 5.6e-06 26.8 0.0 9.9e-06 26.0 0.0 1.4 1 0 0 1 1 1 1 Scavenger mRNA decapping enzyme C-term binding CwfJ_C_1 PF04677.15 gi|212223587|ref|YP_002306823.1| - 0.00013 21.8 0.0 0.0002 21.2 0.0 1.4 1 1 0 1 1 1 1 Protein similar to CwfJ C-terminus 1 PhosphMutase PF10143.9 gi|212223588|ref|YP_002306824.1| - 2.6e-54 183.6 0.0 4.6e-54 182.8 0.0 1.4 1 0 0 1 1 1 1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase Metalloenzyme PF01676.18 gi|212223588|ref|YP_002306824.1| - 5.2e-52 176.7 0.1 6.1e-52 176.5 0.1 1.0 1 0 0 1 1 1 1 Metalloenzyme superfamily Phosphodiest PF01663.22 gi|212223588|ref|YP_002306824.1| - 2.5e-09 37.2 0.0 8.4e-08 32.2 0.0 2.1 2 0 0 2 2 2 1 Type I phosphodiesterase / nucleotide pyrophosphatase Sulfatase PF00884.23 gi|212223588|ref|YP_002306824.1| - 5.9e-05 22.6 0.0 0.058 12.8 0.0 2.2 2 0 0 2 2 2 2 Sulfatase DUF2384 PF09722.10 gi|212223588|ref|YP_002306824.1| - 0.15 12.1 0.0 0.41 10.7 0.0 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF2384) Aldo_ket_red PF00248.21 gi|212223589|ref|YP_002306825.1| - 7.4e-63 212.5 0.0 3.3e-61 207.0 0.0 2.0 1 1 0 1 1 1 1 Aldo/keto reductase family AP2 PF00847.20 gi|212223589|ref|YP_002306825.1| - 0.0025 18.0 0.1 0.0051 17.0 0.1 1.5 1 0 0 1 1 1 1 AP2 domain TBPIP PF07106.13 gi|212223589|ref|YP_002306825.1| - 0.014 15.3 0.0 2.1 8.3 0.0 2.4 2 0 0 2 2 2 0 TBPIP/Hop2 winged helix domain AFOR_C PF01314.18 gi|212223590|ref|YP_002306826.1| - 1.4e-96 323.8 0.0 1.8e-96 323.5 0.0 1.1 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.15 gi|212223590|ref|YP_002306826.1| - 1.3e-69 234.0 0.2 2.6e-69 233.0 0.2 1.4 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain Alpha_Helical PF18489.1 gi|212223592|ref|YP_002306828.1| - 8.1e-57 190.9 0.6 1.1e-56 190.4 0.6 1.2 1 0 0 1 1 1 1 Alpha helical domain tRNA_bind PF01588.20 gi|212223592|ref|YP_002306828.1| - 5.1e-19 68.2 0.1 9.4e-19 67.3 0.1 1.4 1 0 0 1 1 1 1 Putative tRNA binding domain DUF3189 PF11385.8 gi|212223592|ref|YP_002306828.1| - 0.0026 17.6 0.0 0.0065 16.3 0.0 1.6 1 1 0 1 1 1 1 Protein of unknown function (DUF3189) Phage_GPA PF05840.13 gi|212223592|ref|YP_002306828.1| - 0.12 11.5 0.1 0.16 11.1 0.1 1.1 1 0 0 1 1 1 0 Bacteriophage replication gene A protein (GPA) TPR_12 PF13424.6 gi|212223593|ref|YP_002306829.1| - 2.7e-10 40.4 13.3 7.4e-08 32.6 5.1 4.1 4 1 1 5 5 5 2 Tetratricopeptide repeat TPR_2 PF07719.17 gi|212223593|ref|YP_002306829.1| - 4e-06 26.5 18.2 0.00021 21.2 1.5 4.6 5 0 0 5 5 4 2 Tetratricopeptide repeat SNAP PF14938.6 gi|212223593|ref|YP_002306829.1| - 2e-05 24.1 0.4 3e-05 23.6 0.1 1.4 2 0 0 2 2 2 1 Soluble NSF attachment protein, SNAP TPR_MalT PF17874.1 gi|212223593|ref|YP_002306829.1| - 0.00015 21.3 0.0 0.00026 20.5 0.0 1.3 1 0 0 1 1 1 1 MalT-like TPR region TPR_10 PF13374.6 gi|212223593|ref|YP_002306829.1| - 0.00082 19.2 13.4 0.0016 18.2 1.1 3.5 4 0 0 4 4 4 2 Tetratricopeptide repeat TPR_1 PF00515.28 gi|212223593|ref|YP_002306829.1| - 0.00083 19.1 14.5 0.0015 18.3 0.8 4.6 6 0 0 6 6 5 2 Tetratricopeptide repeat TPR_8 PF13181.6 gi|212223593|ref|YP_002306829.1| - 0.0031 17.6 0.5 0.0031 17.6 0.5 4.8 6 0 0 6 6 6 1 Tetratricopeptide repeat TPR_14 PF13428.6 gi|212223593|ref|YP_002306829.1| - 0.0059 17.3 12.5 0.21 12.5 1.2 5.2 5 2 1 6 6 6 2 Tetratricopeptide repeat Utp13 PF08625.11 gi|212223593|ref|YP_002306829.1| - 0.0069 16.3 0.1 0.095 12.6 0.0 2.6 2 1 0 2 2 2 1 Utp13 specific WD40 associated domain TPR_7 PF13176.6 gi|212223593|ref|YP_002306829.1| - 0.0081 16.1 6.4 0.091 12.8 0.2 4.1 4 0 0 4 4 4 1 Tetratricopeptide repeat Foie-gras_1 PF11817.8 gi|212223593|ref|YP_002306829.1| - 0.025 14.2 0.1 0.31 10.6 0.0 2.3 2 1 0 2 2 2 0 Foie gras liver health family 1 TPR_16 PF13432.6 gi|212223593|ref|YP_002306829.1| - 0.029 15.0 1.7 0.029 15.0 1.7 4.3 4 1 0 5 5 5 0 Tetratricopeptide repeat TPR_17 PF13431.6 gi|212223593|ref|YP_002306829.1| - 0.19 12.2 0.6 7.8 7.1 0.0 3.4 3 1 0 4 4 3 0 Tetratricopeptide repeat TPR_6 PF13174.6 gi|212223593|ref|YP_002306829.1| - 4.1 8.3 11.0 37 5.3 0.0 4.7 5 0 0 5 5 5 0 Tetratricopeptide repeat zf-ACC PF17848.1 gi|212223594|ref|YP_002306830.1| - 0.0007 19.6 0.4 0.2 11.8 0.1 2.3 2 0 0 2 2 2 1 Acetyl-coA carboxylase zinc finger domain zf-ribbon_3 PF13248.6 gi|212223594|ref|YP_002306830.1| - 0.0048 16.3 1.3 1.4 8.5 0.2 2.2 2 0 0 2 2 2 2 zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|212223594|ref|YP_002306830.1| - 0.0089 15.7 3.0 1.2 9.0 0.6 2.3 2 0 0 2 2 2 2 zinc-ribbon domain Trm112p PF03966.16 gi|212223594|ref|YP_002306830.1| - 0.01 16.4 0.0 0.021 15.4 0.0 1.6 1 1 0 1 1 1 1 Trm112p-like protein PhnA_Zn_Ribbon PF08274.12 gi|212223594|ref|YP_002306830.1| - 0.01 15.8 0.5 5.3 7.1 0.0 2.2 2 0 0 2 2 2 0 PhnA Zinc-Ribbon zf-Di19 PF05605.12 gi|212223594|ref|YP_002306830.1| - 0.012 15.9 0.4 5.6 7.3 0.0 2.2 2 0 0 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding Zn-ribbon_8 PF09723.10 gi|212223594|ref|YP_002306830.1| - 0.013 15.6 0.7 0.76 10.0 0.1 2.4 2 0 0 2 2 2 0 Zinc ribbon domain Mu-like_Com PF10122.9 gi|212223594|ref|YP_002306830.1| - 0.014 14.8 0.0 1.7 8.1 0.0 2.3 2 0 0 2 2 2 0 Mu-like prophage protein Com zf-C2H2_4 PF13894.6 gi|212223594|ref|YP_002306830.1| - 0.016 16.0 0.8 4.9 8.3 0.4 2.6 2 0 0 2 2 2 0 C2H2-type zinc finger zf-C4_Topoisom PF01396.19 gi|212223594|ref|YP_002306830.1| - 0.028 14.2 1.5 3.4 7.5 0.1 2.2 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger Ogr_Delta PF04606.12 gi|212223594|ref|YP_002306830.1| - 0.029 14.4 0.8 3.9 7.5 0.0 2.2 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger Zn_ribbon_SprT PF17283.2 gi|212223594|ref|YP_002306830.1| - 0.034 14.1 0.8 1 9.3 0.1 2.3 2 0 0 2 2 2 0 SprT-like zinc ribbon domain YacG PF03884.14 gi|212223594|ref|YP_002306830.1| - 0.038 13.7 0.3 4.5 7.1 0.0 2.3 2 0 0 2 2 2 0 DNA gyrase inhibitor YacG Rad50_zn_hook PF04423.14 gi|212223594|ref|YP_002306830.1| - 0.044 13.6 2.1 1.2 9.1 0.0 2.8 2 1 0 2 2 2 0 Rad50 zinc hook motif zf-NADH-PPase PF09297.11 gi|212223594|ref|YP_002306830.1| - 0.071 12.8 2.5 0.55 9.9 0.2 2.2 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain TF_Zn_Ribbon PF08271.12 gi|212223594|ref|YP_002306830.1| - 0.086 12.4 0.5 3.5 7.2 0.1 2.2 2 0 0 2 2 2 0 TFIIB zinc-binding zinc_ribbon_4 PF13717.6 gi|212223594|ref|YP_002306830.1| - 0.11 12.4 0.3 8.7 6.4 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain DNA_ligase_ZBD PF03119.16 gi|212223594|ref|YP_002306830.1| - 0.12 12.4 1.7 4.6 7.3 0.1 2.2 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain zf-C2H2_6 PF13912.6 gi|212223594|ref|YP_002306830.1| - 0.3 11.1 2.9 2.2 8.4 0.8 2.2 2 0 0 2 2 2 0 C2H2-type zinc finger Cys_rich_CPXG PF14255.6 gi|212223594|ref|YP_002306830.1| - 0.31 11.0 1.7 14 5.7 0.4 2.5 3 0 0 3 3 2 0 Cysteine-rich CPXCG zf-tcix PF14952.6 gi|212223594|ref|YP_002306830.1| - 0.33 10.6 3.4 7 6.3 0.1 2.2 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding zf-C2H2 PF00096.26 gi|212223594|ref|YP_002306830.1| - 0.36 11.4 1.0 9.7 6.9 0.4 2.4 2 0 0 2 2 2 0 Zinc finger, C2H2 type YhfH PF14149.6 gi|212223594|ref|YP_002306830.1| - 1.6 8.8 5.3 20 5.3 0.7 3.2 2 1 1 3 3 3 0 YhfH-like protein zf-H2C2_2 PF13465.6 gi|212223594|ref|YP_002306830.1| - 2.2 8.9 5.4 8.9 6.9 1.2 2.2 2 0 0 2 2 2 0 Zinc-finger double domain Zn-C2H2_12 PF18112.1 gi|212223594|ref|YP_002306830.1| - 4.2 7.9 5.5 14 6.2 0.3 2.4 2 0 0 2 2 2 0 Autophagy receptor zinc finger-C2H2 domain zf-C2HC_2 PF13913.6 gi|212223594|ref|YP_002306830.1| - 6.1 6.9 6.5 11 6.1 1.3 2.2 2 0 0 2 2 2 0 zinc-finger of a C2HC-type DUF1610 PF07754.11 gi|212223594|ref|YP_002306830.1| - 9.4 6.3 9.3 0.86 9.6 2.1 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) DHH PF01368.20 gi|212223595|ref|YP_002306831.1| - 3.6e-13 49.6 0.0 6.3e-13 48.8 0.0 1.3 1 0 0 1 1 1 1 DHH family DHHA1 PF02272.19 gi|212223595|ref|YP_002306831.1| - 2.9e-12 47.2 2.7 1.5e-11 44.9 2.6 2.0 2 0 0 2 2 2 1 DHHA1 domain DUF3194 PF11419.8 gi|212223596|ref|YP_002306832.1| - 1e-25 89.8 6.9 1.3e-25 89.6 6.9 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3194) CsoSCA PF08936.10 gi|212223596|ref|YP_002306832.1| - 0.0091 14.7 0.6 0.011 14.5 0.6 1.0 1 0 0 1 1 1 1 Carboxysome Shell Carbonic Anhydrase FKBP_N_2 PF18023.1 gi|212223596|ref|YP_002306832.1| - 0.069 13.2 1.5 0.11 12.6 0.3 1.8 2 0 0 2 2 2 0 BDBT FKBP like N-terminal Prefoldin_2 PF01920.20 gi|212223597|ref|YP_002306833.1| - 1.3e-23 82.9 21.1 1.5e-23 82.7 21.1 1.0 1 0 0 1 1 1 1 Prefoldin subunit CdvA PF18822.1 gi|212223597|ref|YP_002306833.1| - 0.00028 20.7 10.4 0.019 14.8 0.3 2.3 2 0 0 2 2 2 2 CdvA-like coiled-coil domain DUF3416 PF11896.8 gi|212223597|ref|YP_002306833.1| - 0.0028 18.0 1.5 0.0035 17.7 1.5 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF3416) EzrA PF06160.12 gi|212223597|ref|YP_002306833.1| - 0.0056 14.9 10.6 0.0069 14.6 10.6 1.1 1 0 0 1 1 1 1 Septation ring formation regulator, EzrA FlaC_arch PF05377.11 gi|212223597|ref|YP_002306833.1| - 0.0081 16.5 4.2 0.0081 16.5 4.2 2.5 2 1 0 2 2 2 1 Flagella accessory protein C (FlaC) DUF3450 PF11932.8 gi|212223597|ref|YP_002306833.1| - 0.0089 15.4 14.1 0.085 12.1 3.9 2.0 2 0 0 2 2 2 2 Protein of unknown function (DUF3450) XhlA PF10779.9 gi|212223597|ref|YP_002306833.1| - 0.013 15.6 12.2 0.03 14.5 7.2 2.2 2 0 0 2 2 2 0 Haemolysin XhlA PilJ PF13675.6 gi|212223597|ref|YP_002306833.1| - 0.017 15.2 3.3 0.065 13.3 0.2 2.1 2 0 0 2 2 2 0 Type IV pili methyl-accepting chemotaxis transducer N-term GIT_CC PF16559.5 gi|212223597|ref|YP_002306833.1| - 0.019 14.8 3.2 0.019 14.8 3.2 2.2 2 0 0 2 2 1 0 GIT coiled-coil Rho guanine nucleotide exchange factor Spc7 PF08317.11 gi|212223597|ref|YP_002306833.1| - 0.025 13.4 19.5 0.16 10.8 8.5 2.0 1 1 0 2 2 2 0 Spc7 kinetochore protein PAF-AH_p_II PF03403.13 gi|212223597|ref|YP_002306833.1| - 0.042 12.4 2.5 0.049 12.1 2.5 1.3 1 0 0 1 1 1 0 Platelet-activating factor acetylhydrolase, isoform II YscO PF07321.12 gi|212223597|ref|YP_002306833.1| - 0.042 13.8 14.3 0.49 10.3 3.6 2.1 2 0 0 2 2 2 0 Type III secretion protein YscO CENP-F_leu_zip PF10473.9 gi|212223597|ref|YP_002306833.1| - 0.051 13.6 16.3 0.54 10.3 6.0 2.0 2 0 0 2 2 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 FUSC PF04632.12 gi|212223597|ref|YP_002306833.1| - 0.053 12.1 1.1 0.06 11.9 1.1 1.0 1 0 0 1 1 1 0 Fusaric acid resistance protein family SRP54 PF00448.22 gi|212223597|ref|YP_002306833.1| - 0.069 12.8 5.3 0.083 12.5 5.3 1.2 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain Prefoldin PF02996.17 gi|212223597|ref|YP_002306833.1| - 0.071 13.0 17.7 0.1 12.5 5.4 2.3 1 1 0 2 2 2 0 Prefoldin subunit TolA_bind_tri PF16331.5 gi|212223597|ref|YP_002306833.1| - 0.077 13.1 12.1 0.34 11.0 1.1 2.1 2 0 0 2 2 2 0 TolA binding protein trimerisation DASH_Dam1 PF08653.10 gi|212223597|ref|YP_002306833.1| - 0.088 12.6 0.5 0.3 10.9 0.5 1.9 1 1 0 1 1 1 0 DASH complex subunit Dam1 TPR_MLP1_2 PF07926.12 gi|212223597|ref|YP_002306833.1| - 0.12 12.4 16.6 0.073 13.1 5.4 2.1 2 0 0 2 2 2 0 TPR/MLP1/MLP2-like protein CLZ PF16526.5 gi|212223597|ref|YP_002306833.1| - 0.12 12.7 13.3 0.072 13.5 4.1 2.2 2 0 0 2 2 2 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels COG2 PF06148.11 gi|212223597|ref|YP_002306833.1| - 0.13 12.4 7.9 1.9 8.6 0.8 2.1 2 0 0 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 DUF4988 PF16378.5 gi|212223597|ref|YP_002306833.1| - 0.23 11.1 6.9 0.14 11.8 1.4 2.0 2 0 0 2 2 2 0 Domain of unknown function ADIP PF11559.8 gi|212223597|ref|YP_002306833.1| - 0.24 11.5 15.5 0.075 13.1 6.5 2.1 2 0 0 2 2 2 0 Afadin- and alpha -actinin-Binding YabA PF06156.13 gi|212223597|ref|YP_002306833.1| - 0.33 11.6 14.4 0.54 10.9 2.4 2.1 1 1 1 2 2 2 0 Initiation control protein YabA DHR10 PF18595.1 gi|212223597|ref|YP_002306833.1| - 0.34 11.0 21.7 5.1 7.2 21.7 2.0 1 1 0 1 1 1 0 Designed helical repeat protein 10 domain V_ATPase_I PF01496.19 gi|212223597|ref|YP_002306833.1| - 0.38 8.6 9.3 0.8 7.5 9.3 1.4 1 1 0 1 1 1 0 V-type ATPase 116kDa subunit family Sec34 PF04136.15 gi|212223597|ref|YP_002306833.1| - 0.4 10.5 12.2 1.4 8.7 3.4 2.0 1 1 1 2 2 2 0 Sec34-like family FapA PF03961.13 gi|212223597|ref|YP_002306833.1| - 0.41 9.2 10.7 0.5 8.9 10.7 1.1 1 0 0 1 1 1 0 Flagellar Assembly Protein A Ead_Ea22 PF13935.6 gi|212223597|ref|YP_002306833.1| - 0.42 11.3 8.6 4.2 8.0 8.6 2.0 1 1 0 1 1 1 0 Ead/Ea22-like protein Prominin PF05478.11 gi|212223597|ref|YP_002306833.1| - 0.45 8.4 7.5 0.59 8.0 7.5 1.1 1 0 0 1 1 1 0 Prominin NPL PF17800.1 gi|212223597|ref|YP_002306833.1| - 0.45 11.1 2.6 0.37 11.4 0.4 1.8 1 1 1 2 2 2 0 Nucleoplasmin-like domain Exonuc_VII_L PF02601.15 gi|212223597|ref|YP_002306833.1| - 0.46 10.0 5.8 0.54 9.8 5.8 1.1 1 0 0 1 1 1 0 Exonuclease VII, large subunit DUF641 PF04859.12 gi|212223597|ref|YP_002306833.1| - 0.56 10.6 10.2 0.19 12.0 2.6 2.0 2 0 0 2 2 2 0 Plant protein of unknown function (DUF641) Snapin_Pallidin PF14712.6 gi|212223597|ref|YP_002306833.1| - 0.65 10.5 17.9 0.67 10.4 5.0 2.1 1 1 1 2 2 2 0 Snapin/Pallidin Laminin_II PF06009.12 gi|212223597|ref|YP_002306833.1| - 0.7 9.9 13.3 1.1 9.3 13.3 1.4 1 1 0 1 1 1 0 Laminin Domain II DUF4404 PF14357.6 gi|212223597|ref|YP_002306833.1| - 0.72 10.5 11.8 1.2 9.8 3.8 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4404) DUF3958 PF13125.6 gi|212223597|ref|YP_002306833.1| - 0.78 10.0 14.6 1.5 9.1 14.6 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF3958) LIF_OSM PF01291.17 gi|212223597|ref|YP_002306833.1| - 0.83 9.8 5.6 0.37 10.9 1.2 2.0 2 0 0 2 2 2 0 LIF / OSM family EMP24_GP25L PF01105.24 gi|212223597|ref|YP_002306833.1| - 0.97 9.3 5.5 1.6 8.6 5.3 1.5 1 1 0 1 1 1 0 emp24/gp25L/p24 family/GOLD NPV_P10 PF05531.12 gi|212223597|ref|YP_002306833.1| - 1.1 9.8 10.5 0.33 11.4 2.0 2.3 2 1 0 2 2 2 0 Nucleopolyhedrovirus P10 protein Seryl_tRNA_N PF02403.22 gi|212223597|ref|YP_002306833.1| - 1.2 9.4 18.1 0.13 12.5 7.0 2.1 1 1 1 2 2 2 0 Seryl-tRNA synthetase N-terminal domain BLOC1_2 PF10046.9 gi|212223597|ref|YP_002306833.1| - 1.3 9.4 14.0 73 3.8 14.0 2.1 1 1 0 1 1 1 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 ARD PF03079.14 gi|212223597|ref|YP_002306833.1| - 1.4 9.1 4.8 1.8 8.8 4.8 1.1 1 0 0 1 1 1 0 ARD/ARD' family PI3K_P85_iSH2 PF16454.5 gi|212223597|ref|YP_002306833.1| - 1.6 8.3 15.6 27 4.3 15.9 2.0 1 1 0 1 1 1 0 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain Syntaxin-6_N PF09177.11 gi|212223597|ref|YP_002306833.1| - 1.8 9.1 9.7 16 6.1 9.7 2.1 1 1 0 1 1 1 0 Syntaxin 6, N-terminal SOAR PF16533.5 gi|212223597|ref|YP_002306833.1| - 2 8.4 10.4 5.3 7.1 10.4 1.8 1 1 0 1 1 1 0 STIM1 Orai1-activating region DUF1664 PF07889.12 gi|212223597|ref|YP_002306833.1| - 2 8.5 11.2 26 4.9 2.0 2.0 1 1 0 1 1 1 0 Protein of unknown function (DUF1664) Rota_NSP3 PF01665.16 gi|212223597|ref|YP_002306833.1| - 2 7.4 6.3 2.6 7.1 6.3 1.3 1 1 0 1 1 1 0 Rotavirus non-structural protein NSP3 HemX PF04375.14 gi|212223597|ref|YP_002306833.1| - 2.1 7.6 14.4 4.1 6.6 14.5 1.5 1 1 0 1 1 1 0 HemX, putative uroporphyrinogen-III C-methyltransferase HMA PF00403.26 gi|212223597|ref|YP_002306833.1| - 2.2 8.8 8.0 1.4 9.4 4.9 2.0 1 1 1 2 2 2 0 Heavy-metal-associated domain DUF4618 PF15397.6 gi|212223597|ref|YP_002306833.1| - 2.4 7.5 19.7 0.69 9.3 7.3 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4618) zf-CpG_bind_C PF12269.8 gi|212223597|ref|YP_002306833.1| - 2.6 7.8 11.7 4.7 6.9 4.1 2.0 1 1 1 2 2 2 0 CpG binding protein zinc finger C terminal domain FAA_hydro_N_2 PF18288.1 gi|212223597|ref|YP_002306833.1| - 2.9 8.4 5.6 7.7 7.0 0.5 2.2 1 1 1 2 2 2 0 Fumarylacetoacetase N-terminal domain 2 MbeB_N PF04837.12 gi|212223597|ref|YP_002306833.1| - 2.9 8.3 12.5 0.27 11.6 5.0 2.3 2 0 0 2 2 2 0 MbeB-like, N-term conserved region FACT-Spt16_Nlob PF14826.6 gi|212223597|ref|YP_002306833.1| - 4.7 7.0 10.2 0.65 9.8 4.5 1.9 1 1 1 2 2 2 0 FACT complex subunit SPT16 N-terminal lobe domain YlqD PF11068.8 gi|212223597|ref|YP_002306833.1| - 4.9 7.5 19.7 0.75 10.2 5.3 2.1 1 1 1 2 2 2 0 YlqD protein GP41 PF00517.17 gi|212223597|ref|YP_002306833.1| - 5.5 6.8 12.4 2 8.3 1.8 2.0 1 1 1 2 2 2 0 Retroviral envelope protein Spc24 PF08286.11 gi|212223597|ref|YP_002306833.1| - 6.3 7.1 16.3 1.2 9.4 6.2 2.2 1 1 1 2 2 2 0 Spc24 subunit of Ndc80 MCU PF04678.13 gi|212223597|ref|YP_002306833.1| - 7.2 6.7 11.7 5.3 7.1 6.1 1.9 1 1 1 2 2 2 0 Mitochondrial calcium uniporter DUF16 PF01519.16 gi|212223597|ref|YP_002306833.1| - 7.5 7.1 19.5 0.44 11.1 5.6 2.1 1 1 1 2 2 2 0 Protein of unknown function DUF16 Fib_alpha PF08702.10 gi|212223597|ref|YP_002306833.1| - 7.6 6.7 12.3 18 5.5 12.3 1.6 1 1 0 1 1 1 0 Fibrinogen alpha/beta chain family SlyX PF04102.12 gi|212223597|ref|YP_002306833.1| - 8 7.2 13.7 0.38 11.4 2.2 2.4 2 0 0 2 2 2 0 SlyX Carbpep_Y_N PF05388.11 gi|212223597|ref|YP_002306833.1| - 8.5 6.9 9.6 3 8.4 1.7 2.1 1 1 1 2 2 2 0 Carboxypeptidase Y pro-peptide Pcc1 PF09341.10 gi|212223598|ref|YP_002306834.1| - 5.3e-12 45.7 0.0 5.8e-12 45.6 0.0 1.0 1 0 0 1 1 1 1 Transcription factor Pcc1 DUF1330 PF07045.11 gi|212223598|ref|YP_002306834.1| - 0.038 14.3 0.0 0.056 13.8 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1330) DNA_RNApol_7kD PF03604.13 gi|212223600|ref|YP_002306836.1| - 2e-11 43.4 4.6 2.6e-11 43.0 4.6 1.2 1 0 0 1 1 1 1 DNA directed RNA polymerase, 7 kDa subunit Zn-ribbon_8 PF09723.10 gi|212223600|ref|YP_002306836.1| - 5.7e-06 26.4 0.5 7.6e-06 26.0 0.5 1.2 1 0 0 1 1 1 1 Zinc ribbon domain zf-ribbon_3 PF13248.6 gi|212223600|ref|YP_002306836.1| - 2.8e-05 23.3 0.7 0.0082 15.5 0.1 2.1 2 0 0 2 2 2 1 zinc-ribbon domain HypA PF01155.19 gi|212223600|ref|YP_002306836.1| - 7.2e-05 22.8 0.4 8.1e-05 22.6 0.4 1.1 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zinc_ribbon_2 PF13240.6 gi|212223600|ref|YP_002306836.1| - 0.0002 21.0 4.4 0.0032 17.1 4.4 2.0 1 1 0 1 1 1 1 zinc-ribbon domain TF_Zn_Ribbon PF08271.12 gi|212223600|ref|YP_002306836.1| - 0.00089 18.7 2.8 0.0013 18.2 2.8 1.3 1 1 0 1 1 1 1 TFIIB zinc-binding zf_UBZ PF18439.1 gi|212223600|ref|YP_002306836.1| - 0.0014 18.1 0.8 0.11 12.1 0.0 2.1 2 0 0 2 2 2 1 Ubiquitin-Binding Zinc Finger Cys_rich_CPXG PF14255.6 gi|212223600|ref|YP_002306836.1| - 0.0015 18.4 0.6 0.49 10.3 0.2 2.1 2 0 0 2 2 2 1 Cysteine-rich CPXCG Zn_Tnp_IS1595 PF12760.7 gi|212223600|ref|YP_002306836.1| - 0.002 18.1 2.9 0.099 12.6 0.2 2.1 2 0 0 2 2 2 1 Transposase zinc-ribbon domain zinc_ribbon_9 PF14369.6 gi|212223600|ref|YP_002306836.1| - 0.0022 18.2 0.3 0.0036 17.5 0.3 1.4 1 0 0 1 1 1 1 zinc-ribbon DZR PF12773.7 gi|212223600|ref|YP_002306836.1| - 0.0026 17.7 1.2 0.0059 16.6 1.2 1.5 1 1 0 1 1 1 1 Double zinc ribbon YacG PF03884.14 gi|212223600|ref|YP_002306836.1| - 0.0037 17.0 0.6 0.49 10.2 0.1 2.1 2 0 0 2 2 2 1 DNA gyrase inhibitor YacG Desulfoferrod_N PF06397.12 gi|212223600|ref|YP_002306836.1| - 0.0045 16.6 4.5 0.0062 16.1 0.5 2.1 1 1 1 2 2 2 1 Desulfoferrodoxin, N-terminal domain NOB1_Zn_bind PF08772.11 gi|212223600|ref|YP_002306836.1| - 0.0047 17.1 0.2 0.0054 16.9 0.2 1.1 1 0 0 1 1 1 1 Nin one binding (NOB1) Zn-ribbon like OrfB_Zn_ribbon PF07282.11 gi|212223600|ref|YP_002306836.1| - 0.0053 16.7 0.9 0.0068 16.3 0.9 1.2 1 0 0 1 1 1 1 Putative transposase DNA-binding domain Nudix_N_2 PF14803.6 gi|212223600|ref|YP_002306836.1| - 0.0059 16.5 0.5 0.039 13.9 0.3 2.1 1 1 1 2 2 2 1 Nudix N-terminal CpXC PF14353.6 gi|212223600|ref|YP_002306836.1| - 0.0083 16.2 1.1 1.3 9.1 0.1 2.0 1 1 1 2 2 2 1 CpXC protein zf-CHCC PF10276.9 gi|212223600|ref|YP_002306836.1| - 0.0095 16.0 0.1 0.0095 16.0 0.1 1.7 2 0 0 2 2 1 1 Zinc-finger domain zf-ISL3 PF14690.6 gi|212223600|ref|YP_002306836.1| - 0.012 16.3 1.7 0.19 12.4 0.5 2.2 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zinc_ribbon_4 PF13717.6 gi|212223600|ref|YP_002306836.1| - 0.013 15.4 3.7 0.083 12.8 3.7 2.0 1 1 0 1 1 1 0 zinc-ribbon domain Sgf11 PF08209.11 gi|212223600|ref|YP_002306836.1| - 0.014 14.9 1.7 3 7.5 0.2 2.2 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) Elf1 PF05129.13 gi|212223600|ref|YP_002306836.1| - 0.015 15.3 0.2 0.019 15.0 0.2 1.3 1 0 0 1 1 1 0 Transcription elongation factor Elf1 like DUF35_N PF12172.8 gi|212223600|ref|YP_002306836.1| - 0.017 15.0 1.7 1.8 8.5 0.1 2.2 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) DUF951 PF06107.11 gi|212223600|ref|YP_002306836.1| - 0.017 15.0 0.4 1 9.3 0.0 2.0 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF951) DUF3268 PF11672.8 gi|212223600|ref|YP_002306836.1| - 0.019 15.3 1.5 0.44 10.9 0.1 2.0 1 1 1 2 2 2 0 zinc-finger-containing domain RNHCP PF12647.7 gi|212223600|ref|YP_002306836.1| - 0.02 14.9 0.2 0.021 14.8 0.2 1.2 1 0 0 1 1 1 0 RNHCP domain zf-NADH-PPase PF09297.11 gi|212223600|ref|YP_002306836.1| - 0.02 14.6 1.0 0.073 12.8 1.1 1.8 1 1 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain zinc-ribbons_6 PF07191.12 gi|212223600|ref|YP_002306836.1| - 0.02 14.8 0.4 0.029 14.4 0.4 1.3 1 0 0 1 1 1 0 zinc-ribbons zf-C4_Topoisom PF01396.19 gi|212223600|ref|YP_002306836.1| - 0.022 14.6 2.1 0.19 11.6 0.2 2.1 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger zf-C2HC5 PF06221.13 gi|212223600|ref|YP_002306836.1| - 0.022 14.8 0.6 0.033 14.2 0.6 1.4 1 1 0 1 1 1 0 Putative zinc finger motif, C2HC5-type zinc-ribbon_6 PF10005.9 gi|212223600|ref|YP_002306836.1| - 0.026 15.2 0.1 0.031 15.0 0.1 1.1 1 0 0 1 1 1 0 zinc-ribbon domain TFIIS_C PF01096.18 gi|212223600|ref|YP_002306836.1| - 0.03 14.2 2.1 2.6 8.0 0.2 2.1 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) DUF4379 PF14311.6 gi|212223600|ref|YP_002306836.1| - 0.041 14.2 0.5 0.063 13.7 0.5 1.3 1 0 0 1 1 1 0 Probable Zinc-ribbon domain Zn_Tnp_IS91 PF14319.6 gi|212223600|ref|YP_002306836.1| - 0.045 13.8 0.2 0.045 13.8 0.2 1.1 1 0 0 1 1 1 0 Transposase zinc-binding domain DUF1451 PF07295.11 gi|212223600|ref|YP_002306836.1| - 0.049 13.7 0.2 0.055 13.5 0.2 1.1 1 0 0 1 1 1 0 Zinc-ribbon containing domain PknG_rubred PF16919.5 gi|212223600|ref|YP_002306836.1| - 0.051 13.7 0.3 0.059 13.5 0.3 1.1 1 0 0 1 1 1 0 Protein kinase G rubredoxin domain Lar_restr_allev PF14354.6 gi|212223600|ref|YP_002306836.1| - 0.054 13.9 1.4 0.32 11.4 1.4 1.9 1 1 0 1 1 1 0 Restriction alleviation protein Lar zinc_ribbon_5 PF13719.6 gi|212223600|ref|YP_002306836.1| - 0.055 13.2 4.1 3.7 7.4 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Zn_ribbon_recom PF13408.6 gi|212223600|ref|YP_002306836.1| - 0.086 13.4 2.3 1.3 9.6 0.1 2.1 2 0 0 2 2 2 0 Recombinase zinc beta ribbon domain PyrI_C PF02748.15 gi|212223600|ref|YP_002306836.1| - 0.092 12.7 4.1 0.36 10.8 0.2 2.1 1 1 1 2 2 2 0 Aspartate carbamoyltransferase regulatory chain, metal binding domain zf-RING_7 PF02591.15 gi|212223600|ref|YP_002306836.1| - 0.092 12.9 0.3 0.092 12.9 0.3 2.0 1 1 1 2 2 2 0 C4-type zinc ribbon domain zf-H2C2_2 PF13465.6 gi|212223600|ref|YP_002306836.1| - 0.12 12.8 1.5 5.2 7.7 0.1 2.1 2 0 0 2 2 2 0 Zinc-finger double domain zinc_ribbon_10 PF10058.9 gi|212223600|ref|YP_002306836.1| - 0.12 12.1 3.7 4.3 7.1 0.5 2.1 1 1 1 2 2 2 0 Predicted integral membrane zinc-ribbon metal-binding protein YhfH PF14149.6 gi|212223600|ref|YP_002306836.1| - 0.16 12.0 4.3 3.6 7.6 0.8 2.1 1 1 1 2 2 2 0 YhfH-like protein Zn_ribbon_SprT PF17283.2 gi|212223600|ref|YP_002306836.1| - 0.18 11.8 7.7 0.29 11.1 5.0 2.3 1 1 1 2 2 2 0 SprT-like zinc ribbon domain NRDD PF13597.6 gi|212223600|ref|YP_002306836.1| - 0.19 10.5 0.6 0.19 10.5 0.6 1.0 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase zf-C2H2 PF00096.26 gi|212223600|ref|YP_002306836.1| - 0.19 12.3 2.7 9.9 6.8 0.3 2.2 2 0 0 2 2 2 0 Zinc finger, C2H2 type DNA_ligase_ZBD PF03119.16 gi|212223600|ref|YP_002306836.1| - 0.31 11.1 7.2 0.45 10.6 0.3 2.9 2 1 1 3 3 3 0 NAD-dependent DNA ligase C4 zinc finger domain zf-BED PF02892.15 gi|212223600|ref|YP_002306836.1| - 0.59 10.2 3.4 3.5 7.7 0.1 2.1 1 1 1 2 2 2 0 BED zinc finger Rubredoxin_2 PF18073.1 gi|212223600|ref|YP_002306836.1| - 0.77 9.5 5.4 2 8.2 0.3 2.1 2 0 0 2 2 2 0 Rubredoxin metal binding domain Ribosomal_L37ae PF01780.19 gi|212223601|ref|YP_002306837.1| - 2.5e-33 114.0 5.1 2.6e-33 113.9 5.1 1.0 1 0 0 1 1 1 1 Ribosomal L37ae protein family Zn_Tnp_IS1595 PF12760.7 gi|212223601|ref|YP_002306837.1| - 9.5e-07 28.7 1.9 1.3e-06 28.3 1.9 1.2 1 0 0 1 1 1 1 Transposase zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|212223601|ref|YP_002306837.1| - 0.00029 20.9 1.2 0.056 13.6 0.3 2.2 2 0 0 2 2 2 1 Zinc ribbon domain OrfB_Zn_ribbon PF07282.11 gi|212223601|ref|YP_002306837.1| - 0.00031 20.6 0.7 0.00044 20.1 0.7 1.3 1 0 0 1 1 1 1 Putative transposase DNA-binding domain zf-RRN7 PF11781.8 gi|212223601|ref|YP_002306837.1| - 0.0018 17.9 0.7 0.0028 17.3 0.7 1.3 1 0 0 1 1 1 1 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 ADK_lid PF05191.14 gi|212223601|ref|YP_002306837.1| - 0.0033 17.4 0.4 2.3 8.3 0.1 2.2 2 0 0 2 2 2 2 Adenylate kinase, active site lid Rep_fac-A_C PF08646.10 gi|212223601|ref|YP_002306837.1| - 0.0036 17.0 0.2 0.0043 16.8 0.2 1.1 1 0 0 1 1 1 1 Replication factor-A C terminal domain DNA_ligase_ZBD PF03119.16 gi|212223601|ref|YP_002306837.1| - 0.011 15.7 0.9 0.025 14.6 0.9 1.5 1 1 0 1 1 1 0 NAD-dependent DNA ligase C4 zinc finger domain Lar_restr_allev PF14354.6 gi|212223601|ref|YP_002306837.1| - 0.012 16.0 0.3 0.017 15.5 0.3 1.4 1 0 0 1 1 1 0 Restriction alleviation protein Lar C1_1 PF00130.22 gi|212223601|ref|YP_002306837.1| - 0.013 15.4 1.3 0.017 15.0 1.3 1.1 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) RPA_interact_C PF14768.6 gi|212223601|ref|YP_002306837.1| - 0.019 15.5 0.1 0.025 15.1 0.1 1.2 1 0 0 1 1 1 0 Replication protein A interacting C-terminal TF_Zn_Ribbon PF08271.12 gi|212223601|ref|YP_002306837.1| - 0.027 14.0 0.1 0.039 13.5 0.1 1.3 1 0 0 1 1 1 0 TFIIB zinc-binding Prok-RING_1 PF14446.6 gi|212223601|ref|YP_002306837.1| - 0.043 13.8 0.5 0.068 13.1 0.5 1.3 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 NOB1_Zn_bind PF08772.11 gi|212223601|ref|YP_002306837.1| - 0.052 13.7 2.4 0.27 11.4 2.5 2.0 1 1 1 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like A2L_zn_ribbon PF08792.10 gi|212223601|ref|YP_002306837.1| - 0.059 13.1 2.4 0.26 11.1 2.4 1.8 1 1 0 1 1 1 0 A2L zinc ribbon domain zf-RING_13 PF17977.1 gi|212223601|ref|YP_002306837.1| - 0.059 13.5 2.2 0.078 13.1 2.2 1.3 1 0 0 1 1 1 0 RING/Ubox like zinc-binding domain zf-C2H2_6 PF13912.6 gi|212223601|ref|YP_002306837.1| - 0.063 13.3 2.2 7.1 6.8 0.1 2.2 2 0 0 2 2 2 0 C2H2-type zinc finger zf-C2H2_4 PF13894.6 gi|212223601|ref|YP_002306837.1| - 0.074 13.9 0.9 16 6.7 0.1 2.3 2 0 0 2 2 2 0 C2H2-type zinc finger HalOD2 PF18547.1 gi|212223601|ref|YP_002306837.1| - 0.074 13.0 3.5 0.12 12.4 2.8 1.7 1 1 0 1 1 1 0 Halobacterial output domain 2 zf-H2C2_2 PF13465.6 gi|212223601|ref|YP_002306837.1| - 0.098 13.1 0.3 10 6.8 0.0 2.3 2 0 0 2 2 2 0 Zinc-finger double domain zf-BED PF02892.15 gi|212223601|ref|YP_002306837.1| - 0.12 12.4 2.2 3.6 7.7 0.1 2.2 1 1 1 2 2 2 0 BED zinc finger zf-C2H2 PF00096.26 gi|212223601|ref|YP_002306837.1| - 0.12 12.9 0.7 21 5.8 0.1 2.3 2 0 0 2 2 2 0 Zinc finger, C2H2 type Nudix_N_2 PF14803.6 gi|212223601|ref|YP_002306837.1| - 0.13 12.2 2.3 1.9 8.5 0.1 2.4 2 0 0 2 2 2 0 Nudix N-terminal Rubredoxin_2 PF18073.1 gi|212223601|ref|YP_002306837.1| - 0.21 11.3 4.1 0.65 9.8 0.6 2.2 2 0 0 2 2 2 0 Rubredoxin metal binding domain zf-C2HC_2 PF13913.6 gi|212223601|ref|YP_002306837.1| - 0.22 11.5 5.4 2 8.4 0.9 2.3 2 0 0 2 2 2 0 zinc-finger of a C2HC-type Ogr_Delta PF04606.12 gi|212223601|ref|YP_002306837.1| - 0.28 11.2 3.5 11 6.1 3.5 2.2 1 1 0 1 1 1 0 Ogr/Delta-like zinc finger Zn_ribbon_SprT PF17283.2 gi|212223601|ref|YP_002306837.1| - 0.29 11.1 4.8 0.35 10.8 3.7 1.7 1 1 0 1 1 1 0 SprT-like zinc ribbon domain Prim_Zn_Ribbon PF08273.12 gi|212223601|ref|YP_002306837.1| - 1 9.7 7.0 3.7 7.9 7.0 1.9 1 1 0 1 1 1 0 Zinc-binding domain of primase-helicase zinc_ribbon_2 PF13240.6 gi|212223601|ref|YP_002306837.1| - 1.1 9.1 5.0 11 5.8 0.3 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Radical_SAM PF04055.21 gi|212223604|ref|YP_002306840.1| - 1.2e-13 51.8 0.0 1.4e-13 51.6 0.0 1.1 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.6 gi|212223604|ref|YP_002306840.1| - 3.1e-07 30.5 0.1 9.1e-07 29.0 0.1 1.9 1 1 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.6 gi|212223604|ref|YP_002306840.1| - 7.8e-07 29.4 0.0 1.2e-06 28.8 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain PMT_2 PF13231.6 gi|212223605|ref|YP_002306841.1| - 0.1 12.8 10.4 0.24 11.6 10.4 1.6 1 1 0 1 1 1 0 Dolichyl-phosphate-mannose-protein mannosyltransferase DUF2721 PF11026.8 gi|212223605|ref|YP_002306841.1| - 0.23 11.4 0.1 0.23 11.4 0.1 2.5 2 1 0 2 2 2 0 Protein of unknown function (DUF2721) RseC_MucC PF04246.12 gi|212223605|ref|YP_002306841.1| - 0.36 10.8 9.0 0.86 9.6 3.2 2.5 2 1 0 2 2 2 0 Positive regulator of sigma(E), RseC/MucC YtpI PF14007.6 gi|212223605|ref|YP_002306841.1| - 0.5 10.6 4.2 5.7 7.2 0.1 2.4 2 0 0 2 2 2 0 YtpI-like protein DZR PF12773.7 gi|212223606|ref|YP_002306842.1| - 0.0026 17.8 0.3 0.0041 17.1 0.3 1.2 1 0 0 1 1 1 1 Double zinc ribbon Prok-RING_1 PF14446.6 gi|212223606|ref|YP_002306842.1| - 0.003 17.4 1.2 0.003 17.4 1.2 1.8 2 0 0 2 2 2 1 Prokaryotic RING finger family 1 zinc_ribbon_2 PF13240.6 gi|212223606|ref|YP_002306842.1| - 0.018 14.7 6.5 0.18 11.6 6.5 2.2 1 1 0 1 1 1 0 zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|212223606|ref|YP_002306842.1| - 0.039 13.4 5.6 0.19 11.2 5.6 2.0 1 1 0 1 1 1 0 zinc-ribbon domain DUF3006 PF11213.8 gi|212223606|ref|YP_002306842.1| - 0.062 13.5 0.0 0.12 12.7 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3006) zf-NADH-PPase PF09297.11 gi|212223606|ref|YP_002306842.1| - 0.18 11.5 0.3 0.3 10.8 0.3 1.4 1 0 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain DUF1451 PF07295.11 gi|212223606|ref|YP_002306842.1| - 0.24 11.4 0.5 0.44 10.6 0.5 1.4 1 0 0 1 1 1 0 Zinc-ribbon containing domain zf-RING_7 PF02591.15 gi|212223606|ref|YP_002306842.1| - 0.34 11.1 2.7 18 5.6 0.1 2.5 2 0 0 2 2 2 0 C4-type zinc ribbon domain Auto_anti-p27 PF06677.12 gi|212223606|ref|YP_002306842.1| - 0.53 10.5 1.9 0.95 9.7 1.9 1.4 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zf-Mss51 PF13824.6 gi|212223606|ref|YP_002306842.1| - 0.65 10.1 2.9 2.1 8.5 2.9 1.8 1 1 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 Prok-RING_1 PF14446.6 gi|212223607|ref|YP_002306843.1| - 0.00059 19.7 1.2 0.00089 19.1 1.2 1.2 1 0 0 1 1 1 1 Prokaryotic RING finger family 1 zf-ribbon_3 PF13248.6 gi|212223607|ref|YP_002306843.1| - 0.00063 19.1 5.0 0.0022 17.3 5.0 1.8 1 1 0 1 1 1 1 zinc-ribbon domain PhnA_Zn_Ribbon PF08274.12 gi|212223607|ref|YP_002306843.1| - 0.0007 19.5 0.6 0.0013 18.7 0.6 1.4 1 0 0 1 1 1 1 PhnA Zinc-Ribbon zinc_ribbon_4 PF13717.6 gi|212223607|ref|YP_002306843.1| - 0.00074 19.4 1.3 0.021 14.8 1.7 2.2 1 1 1 2 2 2 1 zinc-ribbon domain TF_Zn_Ribbon PF08271.12 gi|212223607|ref|YP_002306843.1| - 0.002 17.6 2.1 0.0034 16.8 2.1 1.4 1 0 0 1 1 1 1 TFIIB zinc-binding zf-RRN7 PF11781.8 gi|212223607|ref|YP_002306843.1| - 0.0034 17.0 0.7 0.0034 17.0 0.7 1.8 2 0 0 2 2 1 1 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 HypA PF01155.19 gi|212223607|ref|YP_002306843.1| - 0.0086 16.1 0.5 0.013 15.5 0.5 1.2 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-RING_7 PF02591.15 gi|212223607|ref|YP_002306843.1| - 0.012 15.8 2.6 1.1 9.5 0.2 2.4 2 0 0 2 2 2 0 C4-type zinc ribbon domain DNA_RNApol_7kD PF03604.13 gi|212223607|ref|YP_002306843.1| - 0.017 14.8 0.7 0.034 13.8 0.7 1.4 1 0 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit zf-CHCC PF10276.9 gi|212223607|ref|YP_002306843.1| - 0.03 14.4 0.9 0.43 10.7 0.1 2.3 2 0 0 2 2 2 0 Zinc-finger domain DZR PF12773.7 gi|212223607|ref|YP_002306843.1| - 0.031 14.3 0.8 0.05 13.6 0.8 1.2 1 0 0 1 1 1 0 Double zinc ribbon Zn-ribbon_8 PF09723.10 gi|212223607|ref|YP_002306843.1| - 0.031 14.4 2.3 0.031 14.4 2.3 1.9 2 0 0 2 2 2 0 Zinc ribbon domain zinc_ribbon_2 PF13240.6 gi|212223607|ref|YP_002306843.1| - 0.06 13.1 8.2 0.34 10.7 8.2 2.0 1 1 0 1 1 1 0 zinc-ribbon domain Ribosomal_S27e PF01667.17 gi|212223607|ref|YP_002306843.1| - 0.1 12.3 0.9 0.2 11.4 0.9 1.4 1 0 0 1 1 1 0 Ribosomal protein S27 Cys_rich_CPXG PF14255.6 gi|212223607|ref|YP_002306843.1| - 0.11 12.4 2.1 7.3 6.6 0.2 2.3 2 0 0 2 2 2 0 Cysteine-rich CPXCG OrfB_Zn_ribbon PF07282.11 gi|212223607|ref|YP_002306843.1| - 0.12 12.3 0.8 0.26 11.3 0.8 1.5 1 0 0 1 1 1 0 Putative transposase DNA-binding domain YacG PF03884.14 gi|212223607|ref|YP_002306843.1| - 0.15 11.8 1.8 1.7 8.4 1.8 2.4 1 1 1 2 2 2 0 DNA gyrase inhibitor YacG zf-Di19 PF05605.12 gi|212223607|ref|YP_002306843.1| - 0.17 12.2 0.9 6.7 7.1 0.1 2.3 2 0 0 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding zinc_ribbon_5 PF13719.6 gi|212223607|ref|YP_002306843.1| - 0.18 11.6 0.4 5 7.0 0.0 2.2 2 0 0 2 2 2 0 zinc-ribbon domain IBR PF01485.21 gi|212223607|ref|YP_002306843.1| - 0.19 12.0 1.2 0.31 11.3 1.2 1.3 1 0 0 1 1 1 0 IBR domain, a half RING-finger domain zf-BED PF02892.15 gi|212223607|ref|YP_002306843.1| - 0.26 11.3 0.5 0.75 9.9 0.0 1.9 1 1 1 2 2 2 0 BED zinc finger Sgf11 PF08209.11 gi|212223607|ref|YP_002306843.1| - 0.34 10.5 1.1 20 4.9 0.3 2.3 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) zf-TFIIB PF13453.6 gi|212223607|ref|YP_002306843.1| - 0.38 10.1 1.4 0.72 9.2 1.4 1.4 1 0 0 1 1 1 0 Transcription factor zinc-finger zf_UBZ PF18439.1 gi|212223607|ref|YP_002306843.1| - 0.4 10.3 0.9 8.7 6.0 0.1 2.3 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger CpXC PF14353.6 gi|212223607|ref|YP_002306843.1| - 0.45 10.6 2.6 12 6.0 0.2 2.3 1 1 1 2 2 2 0 CpXC protein Zn_Tnp_IS1595 PF12760.7 gi|212223607|ref|YP_002306843.1| - 0.46 10.5 3.7 7.1 6.7 0.1 2.5 1 1 1 2 2 2 0 Transposase zinc-ribbon domain UPF0547 PF10571.9 gi|212223607|ref|YP_002306843.1| - 1.5 8.9 4.7 18 5.5 0.6 2.3 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zf-C2HC_2 PF13913.6 gi|212223607|ref|YP_002306843.1| - 4 7.4 5.1 18 5.4 0.2 2.4 2 0 0 2 2 2 0 zinc-finger of a C2HC-type zinc_ribbon_9 PF14369.6 gi|212223607|ref|YP_002306843.1| - 5.8 7.3 5.5 19 5.6 0.2 2.3 1 1 1 2 2 2 0 zinc-ribbon TIP49 PF06068.13 gi|212223608|ref|YP_002306844.1| - 3.3e-140 467.3 1.6 4.3e-140 466.9 1.6 1.1 1 0 0 1 1 1 1 TIP49 P-loop domain TIP49_C PF17856.1 gi|212223608|ref|YP_002306844.1| - 1.7e-21 76.1 0.1 1.6e-20 73.0 0.1 2.4 2 0 0 2 2 2 1 TIP49 AAA-lid domain AAA PF00004.29 gi|212223608|ref|YP_002306844.1| - 3.1e-11 43.8 0.8 1.3e-06 28.8 0.0 2.7 3 0 0 3 3 2 2 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.12 gi|212223608|ref|YP_002306844.1| - 1e-08 35.1 0.2 9e-05 22.3 0.1 2.5 2 0 0 2 2 2 2 Holliday junction DNA helicase RuvB P-loop domain AAA_22 PF13401.6 gi|212223608|ref|YP_002306844.1| - 3.8e-06 27.2 0.0 0.088 13.1 0.0 2.4 2 0 0 2 2 2 2 AAA domain AAA_16 PF13191.6 gi|212223608|ref|YP_002306844.1| - 9.1e-06 26.2 0.1 6.6e-05 23.3 0.1 2.2 1 1 0 1 1 1 1 AAA ATPase domain AAA_5 PF07728.14 gi|212223608|ref|YP_002306844.1| - 7.8e-05 22.7 0.1 0.0056 16.7 0.0 2.4 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_19 PF13245.6 gi|212223608|ref|YP_002306844.1| - 0.00034 21.0 0.6 0.011 16.0 0.6 2.3 1 1 0 1 1 1 1 AAA domain Sigma54_activat PF00158.26 gi|212223608|ref|YP_002306844.1| - 0.00046 19.9 0.2 0.15 11.7 0.1 2.3 2 0 0 2 2 2 1 Sigma-54 interaction domain Mg_chelatase PF01078.21 gi|212223608|ref|YP_002306844.1| - 0.00086 18.7 0.6 0.042 13.2 0.2 2.3 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_7 PF12775.7 gi|212223608|ref|YP_002306844.1| - 0.0012 18.4 0.2 0.0056 16.2 0.0 1.9 2 0 0 2 2 2 1 P-loop containing dynein motor region ResIII PF04851.15 gi|212223608|ref|YP_002306844.1| - 0.0019 18.2 0.0 0.037 14.0 0.0 2.2 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit AAA_23 PF13476.6 gi|212223608|ref|YP_002306844.1| - 0.0031 18.1 1.9 0.008 16.7 1.9 1.9 1 1 0 1 1 1 1 AAA domain ABC_tran PF00005.27 gi|212223608|ref|YP_002306844.1| - 0.0078 16.7 0.1 0.017 15.6 0.1 1.6 1 0 0 1 1 1 1 ABC transporter AAA_25 PF13481.6 gi|212223608|ref|YP_002306844.1| - 0.0079 15.8 0.0 0.017 14.7 0.0 1.7 1 0 0 1 1 1 1 AAA domain TsaE PF02367.17 gi|212223608|ref|YP_002306844.1| - 0.0085 16.1 0.1 0.025 14.6 0.1 1.8 1 0 0 1 1 1 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE T2SSE PF00437.20 gi|212223608|ref|YP_002306844.1| - 0.0099 15.0 2.2 0.25 10.3 0.3 2.4 1 1 1 2 2 2 1 Type II/IV secretion system protein AAA_33 PF13671.6 gi|212223608|ref|YP_002306844.1| - 0.011 15.9 0.0 0.037 14.2 0.0 1.9 2 0 0 2 2 2 0 AAA domain Zeta_toxin PF06414.12 gi|212223608|ref|YP_002306844.1| - 0.012 14.9 0.1 0.029 13.6 0.1 1.6 1 0 0 1 1 1 0 Zeta toxin DNA_pol3_delta PF06144.13 gi|212223608|ref|YP_002306844.1| - 0.013 15.3 0.0 0.029 14.2 0.0 1.5 1 0 0 1 1 1 0 DNA polymerase III, delta subunit DnaB_C PF03796.15 gi|212223608|ref|YP_002306844.1| - 0.02 14.2 0.0 0.05 12.9 0.0 1.7 1 0 0 1 1 1 0 DnaB-like helicase C terminal domain RNA_helicase PF00910.22 gi|212223608|ref|YP_002306844.1| - 0.024 15.0 0.0 0.047 14.1 0.0 1.5 1 0 0 1 1 1 0 RNA helicase DEAD PF00270.29 gi|212223608|ref|YP_002306844.1| - 0.027 14.2 0.6 0.24 11.2 0.1 2.4 2 0 0 2 2 2 0 DEAD/DEAH box helicase NACHT PF05729.12 gi|212223608|ref|YP_002306844.1| - 0.031 14.2 0.0 0.086 12.8 0.1 1.7 2 0 0 2 2 1 0 NACHT domain IstB_IS21 PF01695.17 gi|212223608|ref|YP_002306844.1| - 0.037 13.8 0.1 0.074 12.8 0.1 1.5 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_30 PF13604.6 gi|212223608|ref|YP_002306844.1| - 0.077 12.7 0.4 7.1 6.3 0.1 2.4 2 0 0 2 2 2 0 AAA domain AAA_18 PF13238.6 gi|212223608|ref|YP_002306844.1| - 0.093 13.3 0.0 0.26 11.8 0.0 1.9 2 0 0 2 2 1 0 AAA domain IPT PF01745.16 gi|212223608|ref|YP_002306844.1| - 0.11 11.9 0.0 0.28 10.5 0.0 1.6 2 0 0 2 2 1 0 Isopentenyl transferase AAA_29 PF13555.6 gi|212223608|ref|YP_002306844.1| - 0.23 11.2 0.8 0.64 9.8 0.8 1.7 1 0 0 1 1 1 0 P-loop containing region of AAA domain PIN_4 PF13638.6 gi|212223609|ref|YP_002306845.1| - 0.00019 21.7 0.0 0.00027 21.2 0.0 1.2 1 0 0 1 1 1 1 PIN domain mRNA_cap_enzyme PF01331.19 gi|212223609|ref|YP_002306845.1| - 0.056 13.3 0.3 0.098 12.5 0.3 1.4 1 0 0 1 1 1 0 mRNA capping enzyme, catalytic domain Cas_Cas02710 PF09670.10 gi|212223610|ref|YP_002306846.1| - 0.00017 20.6 0.0 0.00021 20.2 0.0 1.1 1 0 0 1 1 1 1 CRISPR-associated protein (Cas_Cas02710) Cas_DxTHG PF09455.10 gi|212223610|ref|YP_002306846.1| - 0.0045 16.6 0.1 0.0051 16.4 0.1 1.1 1 0 0 1 1 1 1 CRISPR-associated (Cas) DxTHG family Bax1-I PF01027.20 gi|212223611|ref|YP_002306847.1| - 0.042 13.7 4.2 0.05 13.4 4.2 1.2 1 0 0 1 1 1 0 Inhibitor of apoptosis-promoting Bax1 DUF2284 PF10050.9 gi|212223612|ref|YP_002306848.1| - 1.1e-34 119.6 0.2 1.4e-34 119.2 0.2 1.1 1 0 0 1 1 1 1 Predicted metal-binding protein (DUF2284) PBP PF01161.20 gi|212223614|ref|YP_002306850.1| - 1.6e-05 25.3 0.1 1.6e-05 25.2 0.1 1.0 1 0 0 1 1 1 1 Phosphatidylethanolamine-binding protein Y_Y_Y PF07495.13 gi|212223614|ref|YP_002306850.1| - 0.19 11.7 0.0 0.21 11.6 0.0 1.1 1 0 0 1 1 1 0 Y_Y_Y domain LAB_N PF07578.11 gi|212223615|ref|YP_002306851.1| - 1.8e-05 24.7 1.8 2e-05 24.5 1.8 1.0 1 0 0 1 1 1 1 Lipid A Biosynthesis N-terminal domain PQ-loop PF04193.14 gi|212223615|ref|YP_002306851.1| - 0.00017 21.3 2.2 0.00017 21.3 2.2 1.9 1 1 1 2 2 2 1 PQ loop repeat TPR_19 PF14559.6 gi|212223616|ref|YP_002306852.1| - 6.1e-05 23.4 0.1 0.056 14.0 0.0 2.8 1 1 2 3 3 3 2 Tetratricopeptide repeat TPR_14 PF13428.6 gi|212223616|ref|YP_002306852.1| - 0.00056 20.5 0.8 7.1 7.7 0.0 4.2 2 1 2 4 4 4 1 Tetratricopeptide repeat Snf7 PF03357.21 gi|212223616|ref|YP_002306852.1| - 0.004 16.8 0.5 0.0049 16.5 0.5 1.1 1 0 0 1 1 1 1 Snf7 PPR PF01535.20 gi|212223616|ref|YP_002306852.1| - 0.0063 16.7 0.0 7.8 7.0 0.0 3.2 3 0 0 3 3 3 2 PPR repeat TPR_1 PF00515.28 gi|212223616|ref|YP_002306852.1| - 0.0082 15.9 0.2 12 5.9 0.0 4.3 4 2 1 5 5 5 1 Tetratricopeptide repeat Glutaredoxin PF00462.24 gi|212223617|ref|YP_002306853.1| - 2.7e-05 24.3 0.0 0.0001 22.4 0.0 1.9 2 0 0 2 2 2 1 Glutaredoxin Thioredoxin_2 PF13098.6 gi|212223617|ref|YP_002306853.1| - 0.00037 20.9 0.1 0.00079 19.9 0.1 1.6 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_3 PF13192.6 gi|212223617|ref|YP_002306853.1| - 0.00048 20.1 0.4 0.002 18.1 0.1 2.1 1 1 1 2 2 2 1 Thioredoxin domain DUF4052 PF13261.6 gi|212223617|ref|YP_002306853.1| - 0.035 13.9 0.2 0.07 13.0 0.2 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF4052) DUF4690 PF15756.5 gi|212223617|ref|YP_002306853.1| - 0.049 14.2 0.1 0.1 13.2 0.1 1.4 1 0 0 1 1 1 0 Small Novel Rich in Cartilage Thioredoxin_3 PF13192.6 gi|212223619|ref|YP_002306855.1| - 1.4e-09 37.9 0.1 2.3e-09 37.2 0.1 1.3 1 0 0 1 1 1 1 Thioredoxin domain Glutaredoxin PF00462.24 gi|212223619|ref|YP_002306855.1| - 2.1e-05 24.6 0.0 4.4e-05 23.6 0.0 1.5 1 0 0 1 1 1 1 Glutaredoxin Thioredoxin_4 PF13462.6 gi|212223619|ref|YP_002306855.1| - 0.0035 17.5 0.2 0.59 10.3 0.0 2.1 1 1 1 2 2 2 2 Thioredoxin DSBA PF01323.20 gi|212223619|ref|YP_002306855.1| - 0.014 15.2 0.1 0.47 10.2 0.0 2.2 1 1 1 2 2 2 0 DSBA-like thioredoxin domain DUF1223 PF06764.11 gi|212223619|ref|YP_002306855.1| - 0.03 14.4 0.0 0.089 12.8 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF1223) Thioredoxin_2 PF13098.6 gi|212223619|ref|YP_002306855.1| - 0.091 13.2 0.1 1 9.8 0.1 2.1 1 1 0 1 1 1 0 Thioredoxin-like domain DUF4405 PF14358.6 gi|212223620|ref|YP_002306856.1| - 0.00089 19.8 3.6 0.00089 19.8 3.6 3.6 4 0 0 4 4 4 1 Domain of unknown function (DUF4405) Ni_hydr_CYTB PF01292.20 gi|212223620|ref|YP_002306856.1| - 0.0016 18.1 14.0 0.041 13.5 2.0 2.6 2 1 0 2 2 2 2 Prokaryotic cytochrome b561 PalH PF08733.10 gi|212223620|ref|YP_002306856.1| - 0.029 13.4 0.7 0.09 11.8 0.0 1.8 1 1 1 2 2 2 0 PalH/RIM21 Gram_pos_anchor PF00746.21 gi|212223620|ref|YP_002306856.1| - 0.22 11.5 0.1 0.22 11.5 0.1 3.5 5 0 0 5 5 5 0 LPXTG cell wall anchor motif DeoRC PF00455.22 gi|212223621|ref|YP_002306857.1| - 0.098 12.6 0.1 0.17 11.8 0.1 1.3 1 0 0 1 1 1 0 DeoR C terminal sensor domain HTH_5 PF01022.20 gi|212223622|ref|YP_002306858.1| - 1.9e-06 27.6 0.4 3.9e-06 26.6 0.4 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_3 PF01381.22 gi|212223622|ref|YP_002306858.1| - 3.6e-06 26.9 0.1 8.4e-06 25.8 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix HTH_37 PF13744.6 gi|212223622|ref|YP_002306858.1| - 1.2e-05 25.1 0.0 2.4e-05 24.2 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|212223622|ref|YP_002306858.1| - 7.4e-05 22.6 0.1 0.00017 21.4 0.1 1.6 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|212223622|ref|YP_002306858.1| - 0.0001 21.8 0.3 0.00023 20.6 0.3 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_23 PF13384.6 gi|212223622|ref|YP_002306858.1| - 0.00011 21.8 0.2 0.0002 21.1 0.2 1.4 1 0 0 1 1 1 1 Homeodomain-like domain Sigma70_r4_2 PF08281.12 gi|212223622|ref|YP_002306858.1| - 0.00028 20.5 0.2 0.00051 19.7 0.2 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_31 PF13560.6 gi|212223622|ref|YP_002306858.1| - 0.0012 19.1 0.0 0.0018 18.6 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain MarR PF01047.22 gi|212223622|ref|YP_002306858.1| - 0.0013 18.6 0.1 0.0029 17.5 0.1 1.6 1 0 0 1 1 1 1 MarR family HTH_19 PF12844.7 gi|212223622|ref|YP_002306858.1| - 0.0023 17.9 0.2 0.0041 17.1 0.2 1.5 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.10 gi|212223622|ref|YP_002306858.1| - 0.011 15.5 0.1 0.023 14.5 0.1 1.6 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_20 PF12840.7 gi|212223622|ref|YP_002306858.1| - 0.012 15.7 1.0 0.056 13.5 0.3 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain Sigma70_ECF PF07638.11 gi|212223622|ref|YP_002306858.1| - 0.018 14.9 0.2 0.031 14.2 0.1 1.3 1 1 0 1 1 1 0 ECF sigma factor HTH_1 PF00126.27 gi|212223622|ref|YP_002306858.1| - 0.024 14.6 0.0 0.042 13.8 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_38 PF13936.6 gi|212223622|ref|YP_002306858.1| - 0.029 14.1 1.3 0.056 13.2 1.3 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain Sigma70_r4 PF04545.16 gi|212223622|ref|YP_002306858.1| - 0.031 13.8 0.3 0.073 12.6 0.3 1.6 1 0 0 1 1 1 0 Sigma-70, region 4 DUF2443 PF10398.9 gi|212223622|ref|YP_002306858.1| - 0.04 14.0 0.6 0.27 11.3 0.2 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF2443) HTH_26 PF13443.6 gi|212223622|ref|YP_002306858.1| - 0.05 14.0 0.2 0.099 13.1 0.2 1.5 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain HTH_Crp_2 PF13545.6 gi|212223622|ref|YP_002306858.1| - 0.056 13.4 0.1 0.14 12.1 0.1 1.7 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain SAGA-Tad1 PF12767.7 gi|212223622|ref|YP_002306858.1| - 0.057 13.2 0.0 0.082 12.6 0.0 1.2 1 0 0 1 1 1 0 Transcriptional regulator of RNA polII, SAGA, subunit HTH_7 PF02796.15 gi|212223622|ref|YP_002306858.1| - 0.058 13.5 0.7 0.084 13.0 0.1 1.6 2 0 0 2 2 1 0 Helix-turn-helix domain of resolvase HTH_11 PF08279.12 gi|212223622|ref|YP_002306858.1| - 0.061 13.3 0.7 0.14 12.1 0.7 1.5 1 0 0 1 1 1 0 HTH domain Cro PF09048.10 gi|212223622|ref|YP_002306858.1| - 0.083 12.9 0.0 0.12 12.4 0.0 1.4 1 0 0 1 1 1 0 Cro YdaS_antitoxin PF15943.5 gi|212223622|ref|YP_002306858.1| - 0.095 12.6 0.0 0.33 10.9 0.0 1.9 1 1 1 2 2 2 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT TnsD PF15978.5 gi|212223622|ref|YP_002306858.1| - 0.11 11.4 0.2 0.36 9.8 0.1 1.6 1 1 0 2 2 2 0 Tn7-like transposition protein D DUF2316 PF10078.9 gi|212223622|ref|YP_002306858.1| - 0.15 12.3 0.0 0.27 11.5 0.0 1.5 1 1 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2316) Prismane PF03063.20 gi|212223623|ref|YP_002306859.1| - 5.3e-114 381.7 0.0 4.5e-96 322.6 0.0 2.0 1 1 1 2 2 2 2 Prismane/CO dehydrogenase family DUF1858 PF08984.11 gi|212223624|ref|YP_002306860.1| - 5.3e-17 61.7 0.0 8.1e-17 61.2 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF1858) SRP9-21 PF05486.12 gi|212223624|ref|YP_002306860.1| - 0.056 13.8 0.0 0.063 13.7 0.0 1.2 1 0 0 1 1 1 0 Signal recognition particle 9 kDa protein (SRP9) BCDHK_Adom3 PF10436.9 gi|212223624|ref|YP_002306860.1| - 0.083 12.7 0.1 0.095 12.5 0.1 1.2 1 0 0 1 1 1 0 Mitochondrial branched-chain alpha-ketoacid dehydrogenase kinase TusA PF01206.17 gi|212223625|ref|YP_002306861.1| - 0.016 15.1 0.0 0.018 14.8 0.0 1.1 1 0 0 1 1 1 0 Sulfurtransferase TusA EPSP_synthase PF00275.20 gi|212223625|ref|YP_002306861.1| - 0.026 13.3 0.0 0.028 13.1 0.0 1.0 1 0 0 1 1 1 0 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) DUF2249 PF10006.9 gi|212223625|ref|YP_002306861.1| - 0.05 13.5 0.0 0.066 13.1 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2249) DUF438 PF04282.13 gi|212223626|ref|YP_002306862.1| - 7.5e-26 89.9 2.4 1.5e-25 88.9 1.6 2.0 2 0 0 2 2 2 1 Family of unknown function (DUF438) PAS_10 PF13596.6 gi|212223626|ref|YP_002306862.1| - 1.1e-23 83.9 0.0 3e-23 82.4 0.0 1.8 1 0 0 1 1 1 1 PAS domain Hemerythrin PF01814.23 gi|212223626|ref|YP_002306862.1| - 9.7e-21 74.8 0.5 2.1e-20 73.7 0.5 1.6 1 0 0 1 1 1 1 Hemerythrin HHE cation binding domain PAS_4 PF08448.10 gi|212223626|ref|YP_002306862.1| - 5e-05 23.5 0.0 9.5e-05 22.6 0.0 1.5 1 0 0 1 1 1 1 PAS fold HrpB2 PF09487.10 gi|212223626|ref|YP_002306862.1| - 0.15 12.5 0.1 1.5 9.2 0.0 2.4 2 0 0 2 2 2 0 Bacterial type III secretion protein (HrpB2) sCache_3_3 PF17202.4 gi|212223626|ref|YP_002306862.1| - 0.15 12.5 0.1 0.37 11.3 0.1 1.6 1 0 0 1 1 1 0 Single cache domain 3 Cupin_2 PF07883.11 gi|212223627|ref|YP_002306863.1| - 6e-17 61.1 0.0 8e-17 60.7 0.0 1.2 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.19 gi|212223627|ref|YP_002306863.1| - 9e-08 32.1 0.0 1.1e-07 31.9 0.0 1.1 1 0 0 1 1 1 1 AraC-like ligand binding domain MannoseP_isomer PF01050.18 gi|212223627|ref|YP_002306863.1| - 1.7e-06 28.0 0.1 2e-06 27.8 0.1 1.2 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase Cupin_3 PF05899.12 gi|212223627|ref|YP_002306863.1| - 8.7e-06 25.3 0.0 1.1e-05 25.1 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF861) Pirin_C PF05726.13 gi|212223627|ref|YP_002306863.1| - 2.9e-05 24.4 0.0 3.8e-05 24.0 0.0 1.2 1 0 0 1 1 1 1 Pirin C-terminal cupin domain Cupin_1 PF00190.22 gi|212223627|ref|YP_002306863.1| - 4.8e-05 23.0 0.0 6.3e-05 22.6 0.0 1.3 1 0 0 1 1 1 1 Cupin Cupin_6 PF12852.7 gi|212223627|ref|YP_002306863.1| - 0.00013 21.7 0.0 0.00016 21.5 0.0 1.1 1 0 0 1 1 1 1 Cupin Asp_Arg_Hydrox PF05118.15 gi|212223627|ref|YP_002306863.1| - 0.013 15.4 0.0 0.055 13.3 0.0 1.8 1 1 0 1 1 1 0 Aspartyl/Asparaginyl beta-hydroxylase Intein_splicing PF14890.6 gi|212223627|ref|YP_002306863.1| - 0.029 14.3 0.1 0.03 14.3 0.1 1.1 1 0 0 1 1 1 0 Intein splicing domain Cupin_8 PF13621.6 gi|212223627|ref|YP_002306863.1| - 0.064 13.0 0.0 4 7.1 0.0 2.2 2 1 0 2 2 2 0 Cupin-like domain Cupin_7 PF12973.7 gi|212223627|ref|YP_002306863.1| - 0.096 12.6 0.0 0.12 12.3 0.0 1.2 1 0 0 1 1 1 0 ChrR Cupin-like domain CENP-C_C PF11699.8 gi|212223627|ref|YP_002306863.1| - 0.1 12.8 0.0 0.14 12.3 0.0 1.4 1 0 0 1 1 1 0 Mif2/CENP-C like Ectoine_synth PF06339.12 gi|212223627|ref|YP_002306863.1| - 0.11 12.6 0.0 0.13 12.4 0.0 1.3 1 1 0 1 1 1 0 Ectoine synthase KduI PF04962.12 gi|212223627|ref|YP_002306863.1| - 0.13 11.6 0.0 0.16 11.3 0.0 1.1 1 0 0 1 1 1 0 KduI/IolB family Peptidase_M24 PF00557.24 gi|212223628|ref|YP_002306864.1| - 3.9e-30 105.1 0.1 5.1e-30 104.7 0.1 1.1 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.18 gi|212223628|ref|YP_002306864.1| - 6e-13 49.6 0.0 1.6e-11 45.0 0.0 2.3 2 1 0 2 2 2 1 Creatinase/Prolidase N-terminal domain AHSP PF09236.10 gi|212223628|ref|YP_002306864.1| - 0.07 13.6 0.0 0.31 11.5 0.0 2.1 2 1 0 2 2 2 0 Alpha-haemoglobin stabilising protein HTH_AsnC-type PF13404.6 gi|212223629|ref|YP_002306865.1| - 1.6e-16 59.9 1.9 2.4e-16 59.3 1.9 1.3 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain AsnC_trans_reg PF01037.21 gi|212223629|ref|YP_002306865.1| - 9.5e-16 57.5 0.2 2.1e-15 56.4 0.1 1.7 2 0 0 2 2 2 1 Lrp/AsnC ligand binding domain HTH_24 PF13412.6 gi|212223629|ref|YP_002306865.1| - 4.3e-15 55.0 1.1 7.6e-15 54.2 1.1 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.7 gi|212223629|ref|YP_002306865.1| - 6e-08 32.6 0.3 1.4e-07 31.5 0.3 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|212223629|ref|YP_002306865.1| - 5.9e-06 26.1 0.4 1.4e-05 24.8 0.4 1.6 1 0 0 1 1 1 1 MarR family MarR PF01047.22 gi|212223629|ref|YP_002306865.1| - 6.1e-06 26.1 0.1 3.2e-05 23.8 0.1 2.0 2 0 0 2 2 2 1 MarR family HTH_23 PF13384.6 gi|212223629|ref|YP_002306865.1| - 1.2e-05 25.0 1.4 1.3e-05 24.8 0.3 1.6 2 0 0 2 2 1 1 Homeodomain-like domain Sigma70_r4 PF04545.16 gi|212223629|ref|YP_002306865.1| - 3e-05 23.4 1.6 7.2e-05 22.2 1.6 1.7 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_IclR PF09339.10 gi|212223629|ref|YP_002306865.1| - 5.7e-05 22.8 0.1 0.00011 21.9 0.1 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_28 PF13518.6 gi|212223629|ref|YP_002306865.1| - 6.2e-05 23.0 0.1 0.00014 21.9 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain Sigma70_r4_2 PF08281.12 gi|212223629|ref|YP_002306865.1| - 0.00012 21.7 0.6 0.00054 19.6 0.2 2.1 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_5 PF01022.20 gi|212223629|ref|YP_002306865.1| - 0.00015 21.6 0.1 0.00027 20.8 0.1 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family TrmB PF01978.19 gi|212223629|ref|YP_002306865.1| - 0.00015 21.6 0.0 0.0003 20.6 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_27 PF13463.6 gi|212223629|ref|YP_002306865.1| - 0.00016 22.1 0.1 0.0003 21.2 0.1 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_38 PF13936.6 gi|212223629|ref|YP_002306865.1| - 0.00039 20.1 0.3 0.0007 19.3 0.3 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.12 gi|212223629|ref|YP_002306865.1| - 0.00063 19.6 0.8 0.0042 17.0 0.2 2.3 2 0 0 2 2 2 1 HTH domain HTH_Tnp_ISL3 PF13542.6 gi|212223629|ref|YP_002306865.1| - 0.0019 17.6 0.0 0.0032 16.8 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 CENP-B_N PF04218.13 gi|212223629|ref|YP_002306865.1| - 0.0019 17.8 0.0 0.0044 16.6 0.0 1.6 1 0 0 1 1 1 1 CENP-B N-terminal DNA-binding domain HTH_DeoR PF08220.12 gi|212223629|ref|YP_002306865.1| - 0.0023 17.6 0.6 0.0075 16.0 0.2 2.0 2 0 0 2 2 2 1 DeoR-like helix-turn-helix domain RPA_C PF08784.11 gi|212223629|ref|YP_002306865.1| - 0.0025 18.4 0.1 0.081 13.6 0.0 2.2 2 0 0 2 2 2 1 Replication protein A C terminal Fe_dep_repress PF01325.19 gi|212223629|ref|YP_002306865.1| - 0.0034 17.6 0.0 0.0067 16.6 0.0 1.5 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain Methyltransf_33 PF10017.9 gi|212223629|ref|YP_002306865.1| - 0.0038 16.4 0.0 0.0041 16.3 0.0 1.1 1 0 0 1 1 1 1 Histidine-specific methyltransferase, SAM-dependent DUF742 PF05331.11 gi|212223629|ref|YP_002306865.1| - 0.01 15.6 0.0 0.024 14.4 0.0 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF742) FeoC PF09012.10 gi|212223629|ref|YP_002306865.1| - 0.016 15.2 0.0 0.032 14.3 0.0 1.5 1 0 0 1 1 1 0 FeoC like transcriptional regulator HTH_47 PF16221.5 gi|212223629|ref|YP_002306865.1| - 0.018 14.6 0.2 0.14 11.7 0.0 2.2 2 1 1 3 3 3 0 winged helix-turn-helix Penicillinase_R PF03965.16 gi|212223629|ref|YP_002306865.1| - 0.024 15.0 0.1 0.06 13.7 0.0 1.6 2 0 0 2 2 1 0 Penicillinase repressor HxlR PF01638.17 gi|212223629|ref|YP_002306865.1| - 0.036 13.9 0.3 0.078 12.8 0.1 1.6 2 0 0 2 2 1 0 HxlR-like helix-turn-helix Rrf2 PF02082.20 gi|212223629|ref|YP_002306865.1| - 0.048 14.0 0.1 0.12 12.7 0.0 1.7 2 0 0 2 2 1 0 Transcriptional regulator HTH_12 PF08461.10 gi|212223629|ref|YP_002306865.1| - 0.049 13.6 1.7 0.17 11.8 1.7 1.9 1 1 0 1 1 1 0 Ribonuclease R winged-helix domain FtsK_gamma PF09397.10 gi|212223629|ref|YP_002306865.1| - 0.06 13.2 0.2 0.21 11.4 0.1 2.0 1 1 1 2 2 2 0 Ftsk gamma domain DUF3320 PF11784.8 gi|212223629|ref|YP_002306865.1| - 0.062 13.3 0.1 0.16 11.9 0.1 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3320) ACT_4 PF13291.6 gi|212223629|ref|YP_002306865.1| - 0.11 13.2 0.1 0.55 10.8 0.1 2.1 1 1 1 2 2 2 0 ACT domain Sigma70_r3 PF04539.16 gi|212223629|ref|YP_002306865.1| - 0.13 12.4 0.9 1.4 9.1 0.1 2.2 2 0 0 2 2 2 0 Sigma-70 region 3 Aminotran_3 PF00202.21 gi|212223630|ref|YP_002306866.1| - 2.9e-114 381.9 0.0 3.6e-114 381.6 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-III Aminotran_1_2 PF00155.21 gi|212223630|ref|YP_002306866.1| - 0.0061 15.8 0.0 0.0089 15.2 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class I and II Methyltransf_33 PF10017.9 gi|212223630|ref|YP_002306866.1| - 0.057 12.6 0.0 0.1 11.7 0.0 1.4 1 0 0 1 1 1 0 Histidine-specific methyltransferase, SAM-dependent Xan_ur_permease PF00860.20 gi|212223631|ref|YP_002306867.1| - 2.4e-95 319.5 44.6 2.8e-95 319.3 44.6 1.0 1 0 0 1 1 1 1 Permease family DUF996 PF06195.13 gi|212223632|ref|YP_002306868.1| - 1.6e-27 96.4 17.8 1.6e-27 96.4 17.8 1.9 1 1 1 2 2 2 1 Protein of unknown function (DUF996) DUF898 PF05987.13 gi|212223632|ref|YP_002306868.1| - 0.0026 16.9 4.3 0.0026 16.9 4.3 1.7 2 0 0 2 2 2 1 Bacterial protein of unknown function (DUF898) DHHC PF01529.20 gi|212223632|ref|YP_002306868.1| - 0.027 14.6 1.2 0.027 14.6 1.2 2.7 1 1 2 3 3 3 0 DHHC palmitoyltransferase DUF4184 PF13803.6 gi|212223632|ref|YP_002306868.1| - 0.32 10.7 7.1 0.35 10.6 1.1 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4184) Pox_A14 PF05767.12 gi|212223632|ref|YP_002306868.1| - 0.35 11.1 15.6 0.2 11.8 2.7 3.2 3 1 0 3 3 3 0 Poxvirus virion envelope protein A14 Zn_peptidase_2 PF04298.12 gi|212223632|ref|YP_002306868.1| - 1.2 8.5 11.5 0.083 12.3 5.7 1.9 1 1 2 3 3 3 0 Putative neutral zinc metallopeptidase DUF4271 PF14093.6 gi|212223632|ref|YP_002306868.1| - 3.2 7.6 17.9 16 5.3 17.0 2.2 1 1 0 1 1 1 0 Domain of unknown function (DUF4271) DUF3169 PF11368.8 gi|212223632|ref|YP_002306868.1| - 3.2 7.2 14.0 0.17 11.4 6.5 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF3169) DUF2070 PF09843.9 gi|212223632|ref|YP_002306868.1| - 3.3 5.9 13.5 4.8 5.4 13.5 1.2 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) DUF2975 PF11188.8 gi|212223632|ref|YP_002306868.1| - 6.2 6.7 17.7 1.7 8.5 9.5 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF2975) Fer4 PF00037.27 gi|212223633|ref|YP_002306869.1| - 7.2e-13 47.8 11.9 1.5e-06 27.7 3.2 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|212223633|ref|YP_002306869.1| - 4.5e-11 43.2 9.4 1.1e-10 41.9 9.4 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|212223633|ref|YP_002306869.1| - 7.8e-10 38.7 3.0 3.4e-05 23.9 0.2 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|212223633|ref|YP_002306869.1| - 2.8e-07 30.6 18.6 5e-06 26.5 9.8 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|212223633|ref|YP_002306869.1| - 3e-07 30.5 7.7 8e-07 29.1 7.9 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|212223633|ref|YP_002306869.1| - 6.9e-05 22.7 13.4 0.029 14.5 4.6 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|212223633|ref|YP_002306869.1| - 0.00018 21.5 13.9 0.0039 17.2 2.3 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|212223633|ref|YP_002306869.1| - 0.00087 20.2 16.3 0.0032 18.4 11.1 3.1 2 1 1 3 3 3 2 4Fe-4S double cluster binding domain Fer4_8 PF13183.6 gi|212223633|ref|YP_002306869.1| - 0.0025 18.2 8.6 0.0084 16.5 8.6 1.9 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|212223633|ref|YP_002306869.1| - 0.0028 18.3 6.5 0.85 10.4 0.9 2.6 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_4 PF12800.7 gi|212223633|ref|YP_002306869.1| - 0.0035 17.7 9.1 0.16 12.6 0.7 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|212223633|ref|YP_002306869.1| - 0.01 16.4 11.2 0.28 11.8 1.0 2.7 2 1 2 4 4 4 0 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|212223633|ref|YP_002306869.1| - 0.011 16.6 2.8 0.22 12.4 0.3 2.3 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|212223633|ref|YP_002306869.1| - 0.013 15.6 10.6 0.099 12.8 1.0 2.9 2 1 1 3 3 3 0 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|212223633|ref|YP_002306869.1| - 0.02 15.8 18.0 0.03 15.2 4.7 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain CDC24_OB3 PF17244.2 gi|212223633|ref|YP_002306869.1| - 0.62 9.7 2.3 14 5.3 2.3 2.1 1 1 0 1 1 1 0 Cell division control protein 24, OB domain 3 Fer4_13 PF13370.6 gi|212223633|ref|YP_002306869.1| - 2 9.0 13.3 1.3 9.7 1.3 2.8 3 0 0 3 3 3 0 4Fe-4S single cluster domain of Ferredoxin I Complex1_49kDa PF00346.19 gi|212223634|ref|YP_002306870.1| - 4.2e-72 242.5 0.0 2.3e-70 236.8 0.0 2.1 1 1 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 49 Kd subunit NiFeSe_Hases PF00374.19 gi|212223634|ref|YP_002306870.1| - 0.11 11.4 0.0 0.17 10.8 0.0 1.2 1 0 0 1 1 1 0 Nickel-dependent hydrogenase Complex1_30kDa PF00329.19 gi|212223635|ref|YP_002306871.1| - 1.8e-24 86.7 0.5 2.2e-24 86.4 0.5 1.1 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 30 Kd subunit Oxidored_q6 PF01058.22 gi|212223636|ref|YP_002306872.1| - 2.1e-19 69.7 0.0 2.8e-19 69.2 0.0 1.2 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit RE_NgoFVII PF09565.10 gi|212223636|ref|YP_002306872.1| - 0.13 11.5 0.0 0.18 11.1 0.0 1.2 1 0 0 1 1 1 0 NgoFVII restriction endonuclease NADHdh PF00146.21 gi|212223637|ref|YP_002306873.1| - 2.5e-53 181.4 26.1 2.9e-53 181.1 26.1 1.0 1 0 0 1 1 1 1 NADH dehydrogenase Proton_antipo_M PF00361.20 gi|212223638|ref|YP_002306874.1| - 7e-60 202.7 28.6 7e-60 202.7 28.6 2.2 1 1 1 2 2 2 1 Proton-conducting membrane transporter Trp_oprn_chp PF09534.10 gi|212223638|ref|YP_002306874.1| - 0.048 13.4 0.0 0.048 13.4 0.0 3.5 4 1 0 4 4 4 0 Tryptophan-associated transmembrane protein (Trp_oprn_chp) DUF3285 PF11688.8 gi|212223638|ref|YP_002306874.1| - 0.29 11.1 2.6 0.85 9.6 0.1 3.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3285) Proton_antipo_M PF00361.20 gi|212223639|ref|YP_002306875.1| - 8.4e-61 205.7 28.1 8.4e-61 205.7 28.1 2.2 3 0 0 3 3 3 1 Proton-conducting membrane transporter NADHdeh_related PF10125.9 gi|212223639|ref|YP_002306875.1| - 5e-06 26.0 14.3 5e-06 26.0 14.3 3.0 2 1 1 3 3 3 1 NADH dehydrogenase I, subunit N related protein Tail_VII PF17091.5 gi|212223639|ref|YP_002306875.1| - 0.059 13.3 0.5 0.4 10.6 0.5 2.5 1 0 0 1 1 1 0 Inovirus G7P protein Antimicrobial10 PF08105.11 gi|212223639|ref|YP_002306875.1| - 0.42 10.7 1.4 27 4.9 0.2 3.2 2 0 0 2 2 2 0 Metchnikowin family Phage_Coat_Gp8 PF05371.12 gi|212223639|ref|YP_002306875.1| - 0.47 10.3 5.5 2.7 7.8 0.3 3.0 2 0 0 2 2 2 0 Phage major coat protein, Gp8 PIRT PF15099.6 gi|212223639|ref|YP_002306875.1| - 5 6.7 11.2 0.059 12.9 0.5 2.9 3 0 0 3 3 3 0 Phosphoinositide-interacting protein family Oxidored_q2 PF00420.24 gi|212223640|ref|YP_002306876.1| - 6.4e-32 109.3 5.5 7.7e-32 109.1 5.5 1.0 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L DUF2108 PF09881.9 gi|212223640|ref|YP_002306876.1| - 0.0051 16.7 4.6 0.0051 16.7 4.6 1.9 2 0 0 2 2 2 1 Predicted membrane protein (DUF2108) DUF4418 PF14387.6 gi|212223640|ref|YP_002306876.1| - 7.3 6.8 8.5 1.6 8.9 2.8 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4418) YbhQ PF11076.8 gi|212223640|ref|YP_002306876.1| - 7.9 6.5 8.1 1.1 9.3 3.6 1.7 2 0 0 2 2 2 0 Putative inner membrane protein YbhQ MnhB PF04039.13 gi|212223641|ref|YP_002306877.1| - 3.9e-23 82.1 13.7 3.9e-23 82.1 13.7 2.1 2 1 0 2 2 2 1 Domain related to MnhB subunit of Na+/H+ antiporter DUF4040 PF13244.6 gi|212223642|ref|YP_002306878.1| - 7.5e-19 67.7 9.7 8.8e-19 67.4 9.7 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4040) DUF2721 PF11026.8 gi|212223642|ref|YP_002306878.1| - 0.072 13.0 6.9 0.043 13.7 4.9 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF2721) Phage_r1t_holin PF16945.5 gi|212223642|ref|YP_002306878.1| - 0.38 11.0 7.5 0.23 11.6 5.7 1.6 1 1 0 1 1 1 0 Putative lactococcus lactis phage r1t holin RseC_MucC PF04246.12 gi|212223642|ref|YP_002306878.1| - 4.6 7.2 7.3 5.2 7.0 4.0 1.9 1 1 1 2 2 2 0 Positive regulator of sigma(E), RseC/MucC PhaG_MnhG_YufB PF03334.14 gi|212223643|ref|YP_002306879.1| - 2.4e-24 85.4 7.0 2.9e-24 85.1 7.0 1.1 1 0 0 1 1 1 1 Na+/H+ antiporter subunit MrpF_PhaF PF04066.13 gi|212223644|ref|YP_002306880.1| - 4.9e-18 65.3 10.8 4.9e-18 65.3 10.8 2.0 2 0 0 2 2 2 1 Multiple resistance and pH regulation protein F (MrpF / PhaF) IncD PF17628.2 gi|212223644|ref|YP_002306880.1| - 0.073 12.9 2.7 0.079 12.7 2.4 1.3 1 1 0 1 1 1 0 Inclusion membrane protein D MNHE PF01899.16 gi|212223645|ref|YP_002306881.1| - 3.4e-49 166.3 0.2 3.9e-49 166.2 0.2 1.0 1 0 0 1 1 1 1 Na+/H+ ion antiporter subunit ACT PF01842.25 gi|212223646|ref|YP_002306882.1| - 2.9e-06 26.9 0.1 5.2e-06 26.1 0.1 1.4 1 0 0 1 1 1 1 ACT domain ACT_4 PF13291.6 gi|212223646|ref|YP_002306882.1| - 0.048 14.2 0.4 0.2 12.3 0.4 2.0 1 1 0 1 1 1 0 ACT domain DUF1462 PF07315.11 gi|212223646|ref|YP_002306882.1| - 0.11 12.8 0.0 0.28 11.5 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF1462) ACT_7 PF13840.6 gi|212223646|ref|YP_002306882.1| - 0.11 12.3 0.0 0.2 11.5 0.0 1.4 1 0 0 1 1 1 0 ACT domain HU-CCDC81_euk_2 PF18289.1 gi|212223646|ref|YP_002306882.1| - 0.13 12.4 0.0 0.24 11.6 0.0 1.4 1 0 0 1 1 1 0 CCDC81 eukaryotic HU domain 2 Radical_SAM PF04055.21 gi|212223647|ref|YP_002306883.1| - 6.8e-28 98.1 0.0 2.9e-27 96.1 0.0 1.8 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_14 PF13394.6 gi|212223647|ref|YP_002306883.1| - 0.00045 20.3 0.0 0.0017 18.5 0.0 1.9 3 0 0 3 3 3 1 4Fe-4S single cluster domain TRAM PF01938.20 gi|212223647|ref|YP_002306883.1| - 0.054 13.5 0.2 0.11 12.4 0.2 1.6 1 0 0 1 1 1 0 TRAM domain DUF5010 PF16402.5 gi|212223647|ref|YP_002306883.1| - 0.065 12.1 0.0 0.11 11.3 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF5010) Epimerase_2 PF02350.19 gi|212223648|ref|YP_002306884.1| - 6.2e-124 413.4 0.1 7.1e-124 413.2 0.1 1.0 1 0 0 1 1 1 1 UDP-N-acetylglucosamine 2-epimerase Glyco_transf_4 PF13439.6 gi|212223648|ref|YP_002306884.1| - 0.00016 21.7 0.0 0.00046 20.2 0.0 1.7 2 0 0 2 2 2 1 Glycosyltransferase Family 4 DUF354 PF04007.12 gi|212223648|ref|YP_002306884.1| - 0.0023 17.1 0.1 0.0035 16.4 0.1 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF354) Glyco_trans_4_2 PF13477.6 gi|212223648|ref|YP_002306884.1| - 0.0072 16.4 0.0 0.014 15.5 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase 4-like Phage_cap_E PF03864.15 gi|212223648|ref|YP_002306884.1| - 0.082 12.1 0.0 0.12 11.6 0.0 1.3 1 0 0 1 1 1 0 Phage major capsid protein E Pyr_redox PF00070.27 gi|212223648|ref|YP_002306884.1| - 0.12 12.9 0.4 16 6.1 0.0 3.4 2 1 1 3 3 3 0 Pyridine nucleotide-disulphide oxidoreductase AIRC PF00731.20 gi|212223648|ref|YP_002306884.1| - 0.14 11.7 0.0 1.1 8.8 0.0 2.1 2 0 0 2 2 2 0 AIR carboxylase UDPG_MGDP_dh_N PF03721.14 gi|212223649|ref|YP_002306885.1| - 1.8e-52 177.7 0.2 3.9e-52 176.5 0.2 1.5 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain UDPG_MGDP_dh_C PF03720.15 gi|212223649|ref|YP_002306885.1| - 9.7e-27 93.4 0.4 1.4e-25 89.7 0.1 2.6 2 1 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain UDPG_MGDP_dh PF00984.19 gi|212223649|ref|YP_002306885.1| - 2.1e-24 85.5 0.0 4.4e-24 84.5 0.0 1.6 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, central domain NAD_binding_2 PF03446.15 gi|212223649|ref|YP_002306885.1| - 4.6e-09 36.6 0.1 7.7e-08 32.7 0.0 2.5 2 1 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase AlaDh_PNT_C PF01262.21 gi|212223649|ref|YP_002306885.1| - 1.2e-05 24.7 0.4 4.2e-05 22.9 0.1 1.8 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain 3HCDH_N PF02737.18 gi|212223649|ref|YP_002306885.1| - 2.2e-05 24.4 0.1 5.7e-05 23.1 0.1 1.8 1 1 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_Gly3P_dh_N PF01210.23 gi|212223649|ref|YP_002306885.1| - 7.9e-05 22.7 0.0 0.015 15.3 0.0 2.6 2 1 0 2 2 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 2-Hacid_dh_C PF02826.19 gi|212223649|ref|YP_002306885.1| - 0.00016 21.1 0.1 0.0022 17.4 0.1 2.3 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain F420_oxidored PF03807.17 gi|212223649|ref|YP_002306885.1| - 0.00017 22.1 0.4 0.98 10.0 0.3 3.1 2 1 0 2 2 2 2 NADP oxidoreductase coenzyme F420-dependent ApbA PF02558.16 gi|212223649|ref|YP_002306885.1| - 0.017 14.8 0.0 0.067 12.8 0.0 2.0 2 0 0 2 2 2 0 Ketopantoate reductase PanE/ApbA AbiGii_2 PF16873.5 gi|212223649|ref|YP_002306885.1| - 0.021 13.6 0.3 0.043 12.5 0.0 1.6 2 0 0 2 2 2 0 Putative abortive phage resistance protein AbiGii toxin Pyr_redox PF00070.27 gi|212223649|ref|YP_002306885.1| - 0.023 15.2 0.2 0.23 12.1 0.1 2.5 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.19 gi|212223649|ref|YP_002306885.1| - 0.031 13.5 0.0 0.045 13.0 0.0 1.2 1 0 0 1 1 1 0 FAD binding domain Pyr_redox_2 PF07992.14 gi|212223649|ref|YP_002306885.1| - 0.037 13.3 0.0 0.076 12.2 0.0 1.5 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase ThiF PF00899.21 gi|212223649|ref|YP_002306885.1| - 0.042 13.2 0.3 2.2 7.6 0.0 2.5 2 0 0 2 2 2 0 ThiF family DUF354 PF04007.12 gi|212223650|ref|YP_002306886.1| - 5.3e-100 334.8 0.0 6e-100 334.6 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF354) Glyco_transf_4 PF13439.6 gi|212223650|ref|YP_002306886.1| - 0.0033 17.4 0.0 0.0068 16.4 0.0 1.5 1 0 0 1 1 1 1 Glycosyltransferase Family 4 LpxB PF02684.15 gi|212223650|ref|YP_002306886.1| - 0.017 13.9 0.0 0.16 10.7 0.0 2.0 2 0 0 2 2 2 0 Lipid-A-disaccharide synthetase Epimerase_2 PF02350.19 gi|212223650|ref|YP_002306886.1| - 0.06 12.2 0.0 0.11 11.4 0.0 1.3 1 0 0 1 1 1 0 UDP-N-acetylglucosamine 2-epimerase Glyco_trans_4_2 PF13477.6 gi|212223650|ref|YP_002306886.1| - 0.1 12.6 0.0 0.23 11.5 0.0 1.5 1 0 0 1 1 1 0 Glycosyl transferase 4-like SpoIIM PF01944.17 gi|212223651|ref|YP_002306887.1| - 9.4e-33 113.4 13.8 1.2e-32 113.1 13.8 1.0 1 0 0 1 1 1 1 Stage II sporulation protein M DUF3488 PF11992.8 gi|212223651|ref|YP_002306887.1| - 0.026 13.5 0.1 0.056 12.4 0.1 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF3488) Lip_prot_lig_C PF10437.9 gi|212223652|ref|YP_002306888.1| - 2.4e-08 33.8 0.6 3e-08 33.5 0.6 1.2 1 1 0 1 1 1 1 Bacterial lipoate protein ligase C-terminus tRNA-synt_1d PF00750.19 gi|212223653|ref|YP_002306889.1| - 2.8e-40 138.3 0.7 1.9e-25 89.5 0.2 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (R) DALR_1 PF05746.15 gi|212223653|ref|YP_002306889.1| - 2.7e-36 124.3 0.4 1.3e-35 122.1 0.1 2.4 2 0 0 2 2 2 1 DALR anticodon binding domain Arg_tRNA_synt_N PF03485.16 gi|212223653|ref|YP_002306889.1| - 5.3e-15 55.8 0.4 2e-14 53.9 0.0 2.3 2 0 0 2 2 2 1 Arginyl tRNA synthetase N terminal domain tRNA-synt_1e PF01406.19 gi|212223653|ref|YP_002306889.1| - 4.9e-05 22.8 0.0 9.3e-05 21.9 0.0 1.4 1 0 0 1 1 1 1 tRNA synthetases class I (C) catalytic domain tRNA-synt_1 PF00133.22 gi|212223653|ref|YP_002306889.1| - 0.0021 16.4 0.0 0.004 15.5 0.0 1.4 1 0 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) AAR2 PF05282.11 gi|212223653|ref|YP_002306889.1| - 0.031 13.7 0.1 0.058 12.8 0.1 1.4 1 0 0 1 1 1 0 AAR2 protein RecX PF02631.16 gi|212223653|ref|YP_002306889.1| - 0.051 14.0 0.1 0.23 11.9 0.1 2.1 1 0 0 1 1 1 0 RecX family tRNA-synt_1g PF09334.11 gi|212223653|ref|YP_002306889.1| - 0.1 11.3 0.1 0.22 10.3 0.1 1.5 1 0 0 1 1 1 0 tRNA synthetases class I (M) PKcGMP_CC PF16808.5 gi|212223653|ref|YP_002306889.1| - 6.3 6.7 7.3 0.55 10.1 1.6 2.3 2 0 0 2 2 2 0 Coiled-coil N-terminus of cGMP-dependent protein kinase DivIVA PF05103.13 gi|212223653|ref|YP_002306889.1| - 9.7 6.3 9.6 1.8 8.7 0.2 3.2 2 1 1 3 3 3 0 DivIVA protein DHDPS PF00701.22 gi|212223654|ref|YP_002306890.1| - 8.3e-63 211.8 0.0 9.3e-63 211.6 0.0 1.0 1 0 0 1 1 1 1 Dihydrodipicolinate synthetase family eRF1_2 PF03464.15 gi|212223655|ref|YP_002306891.1| - 2.2e-49 167.2 0.0 3.8e-49 166.4 0.0 1.4 1 0 0 1 1 1 1 eRF1 domain 2 eRF1_3 PF03465.15 gi|212223655|ref|YP_002306891.1| - 1.7e-35 121.9 0.3 5.6e-35 120.2 0.3 1.9 1 0 0 1 1 1 1 eRF1 domain 3 baeRF_family10 PF18854.1 gi|212223655|ref|YP_002306891.1| - 2.7e-17 63.3 0.5 8.2e-17 61.8 0.1 2.0 2 0 0 2 2 2 1 Bacterial archaeo-eukaryotic release factor family 10 acVLRF1 PF18859.1 gi|212223655|ref|YP_002306891.1| - 2e-15 57.2 0.0 1.3e-14 54.6 0.0 2.1 1 1 1 2 2 2 1 Actinobacteria/chloroflexi VLRF1 release factor eRF1_1 PF03463.15 gi|212223655|ref|YP_002306891.1| - 6.5e-09 35.9 0.0 1e-08 35.2 0.0 1.3 1 0 0 1 1 1 1 eRF1 domain 1 baeRF_family12 PF18856.1 gi|212223655|ref|YP_002306891.1| - 0.00042 20.9 0.0 0.0009 19.8 0.0 1.6 1 0 0 1 1 1 1 Bacterial archaeo-eukaryotic release factor family 12 HypA PF01155.19 gi|212223655|ref|YP_002306891.1| - 0.0018 18.3 0.1 0.0037 17.3 0.1 1.6 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Zn-ribbon_8 PF09723.10 gi|212223655|ref|YP_002306891.1| - 0.0077 16.3 2.4 0.01 16.0 1.0 1.9 2 0 0 2 2 2 1 Zinc ribbon domain zf-ribbon_3 PF13248.6 gi|212223655|ref|YP_002306891.1| - 0.0094 15.3 1.9 0.29 10.6 0.2 2.3 2 0 0 2 2 2 1 zinc-ribbon domain MCM6_C PF18263.1 gi|212223655|ref|YP_002306891.1| - 0.0098 16.1 0.9 0.67 10.2 0.1 2.4 2 0 0 2 2 2 1 MCM6 C-terminal winged-helix domain FMN_red PF03358.15 gi|212223655|ref|YP_002306891.1| - 0.019 14.7 0.0 8.3 6.1 0.0 2.4 2 0 0 2 2 2 0 NADPH-dependent FMN reductase DZR PF12773.7 gi|212223655|ref|YP_002306891.1| - 0.11 12.5 0.6 0.2 11.7 0.6 1.3 1 0 0 1 1 1 0 Double zinc ribbon baeRF_family2 PF18844.1 gi|212223655|ref|YP_002306891.1| - 0.24 11.5 1.2 1.8 8.6 0.2 2.5 2 1 0 2 2 2 0 Bacterial archaeo-eukaryotic release factor family 2 zf-trcl PF13451.6 gi|212223655|ref|YP_002306891.1| - 1.5 8.8 7.1 0.095 12.6 1.5 1.9 2 0 0 2 2 2 0 Probable zinc-ribbon domain BofA PF07441.11 gi|212223656|ref|YP_002306892.1| - 1.2e-08 35.0 26.2 1.5e-08 34.7 26.2 1.1 1 0 0 1 1 1 1 SigmaK-factor processing regulatory protein BofA Cnd1 PF12717.7 gi|212223657|ref|YP_002306893.1| - 5.5e-06 26.5 0.1 0.0072 16.4 0.2 2.0 1 1 1 2 2 2 2 non-SMC mitotic condensation complex subunit 1 HEAT_2 PF13646.6 gi|212223657|ref|YP_002306893.1| - 6.5e-06 26.4 0.0 0.23 11.9 0.0 2.9 2 1 0 2 2 2 2 HEAT repeats RTP1_C1 PF10363.9 gi|212223657|ref|YP_002306893.1| - 0.00064 19.9 0.0 0.005 17.0 0.0 1.9 1 1 1 2 2 2 1 Required for nuclear transport of RNA pol II C-terminus 1 Adaptin_N PF01602.20 gi|212223657|ref|YP_002306893.1| - 0.00081 18.1 0.0 0.0011 17.6 0.0 1.2 1 0 0 1 1 1 1 Adaptin N terminal region HEAT_EZ PF13513.6 gi|212223657|ref|YP_002306893.1| - 0.00086 19.8 0.0 0.0087 16.5 0.0 2.5 2 1 1 3 3 3 1 HEAT-like repeat M11L PF11099.8 gi|212223657|ref|YP_002306893.1| - 0.043 14.1 0.0 1.1 9.6 0.0 2.1 1 1 0 1 1 1 0 Apoptosis regulator M11L like HEAT_PBS PF03130.16 gi|212223657|ref|YP_002306893.1| - 0.13 13.0 0.2 20 6.2 0.0 3.4 3 0 0 3 3 3 0 PBS lyase HEAT-like repeat YjbR PF04237.13 gi|212223657|ref|YP_002306893.1| - 0.15 12.7 0.0 0.31 11.6 0.0 1.5 1 1 0 1 1 1 0 YjbR Class_IIIsignal PF04021.12 gi|212223658|ref|YP_002306894.1| - 3.2e-08 33.3 0.4 3.2e-08 33.3 0.4 1.8 2 0 0 2 2 2 1 Class III signal peptide HTH_11 PF08279.12 gi|212223659|ref|YP_002306895.1| - 0.00052 19.9 0.1 0.0069 16.3 0.0 2.4 2 0 0 2 2 2 1 HTH domain HTH_38 PF13936.6 gi|212223659|ref|YP_002306895.1| - 0.0099 15.6 0.0 0.061 13.1 0.0 2.3 2 1 0 2 2 2 1 Helix-turn-helix domain HTH_29 PF13551.6 gi|212223659|ref|YP_002306895.1| - 0.016 15.2 0.0 0.036 14.1 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn helix HTH_7 PF02796.15 gi|212223659|ref|YP_002306895.1| - 0.026 14.6 0.1 0.26 11.4 0.0 2.5 3 0 0 3 3 3 0 Helix-turn-helix domain of resolvase HTH_23 PF13384.6 gi|212223659|ref|YP_002306895.1| - 0.035 13.9 0.0 0.064 13.1 0.0 1.5 1 0 0 1 1 1 0 Homeodomain-like domain HTH_28 PF13518.6 gi|212223659|ref|YP_002306895.1| - 0.038 14.1 0.0 0.072 13.2 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_17 PF12728.7 gi|212223659|ref|YP_002306895.1| - 0.09 13.0 0.0 0.19 12.0 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_Tnp_IS630 PF01710.16 gi|212223659|ref|YP_002306895.1| - 0.09 12.8 0.0 0.13 12.3 0.0 1.3 1 0 0 1 1 1 0 Transposase Peptidase_M50 PF02163.22 gi|212223660|ref|YP_002306896.1| - 4.1e-12 45.9 8.4 1.7e-07 30.8 0.1 2.4 1 1 1 2 2 2 2 Peptidase family M50 Zn-ribbon_8 PF09723.10 gi|212223660|ref|YP_002306896.1| - 0.00092 19.3 0.3 0.0016 18.5 0.3 1.3 1 0 0 1 1 1 1 Zinc ribbon domain DUF2109 PF09882.9 gi|212223660|ref|YP_002306896.1| - 0.048 13.7 2.3 0.12 12.3 0.0 2.7 3 0 0 3 3 3 0 Predicted membrane protein (DUF2109) zf-IS66 PF13005.7 gi|212223660|ref|YP_002306896.1| - 0.22 11.9 1.1 0.67 10.4 0.1 2.0 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 TFIIS_C PF01096.18 gi|212223660|ref|YP_002306896.1| - 0.46 10.4 1.1 7.1 6.6 0.1 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) DctQ PF04290.12 gi|212223660|ref|YP_002306896.1| - 2.9 7.8 12.7 0.77 9.7 7.3 2.4 2 0 0 2 2 2 0 Tripartite ATP-independent periplasmic transporters, DctQ component DUF126 PF01989.16 gi|212223661|ref|YP_002306897.1| - 7.9e-36 121.7 0.6 1.1e-35 121.3 0.6 1.2 1 0 0 1 1 1 1 Aconitase X swivel domain DUF3221 PF11518.8 gi|212223661|ref|YP_002306897.1| - 0.066 13.6 0.0 0.1 12.9 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3221) DUF521 PF04412.13 gi|212223662|ref|YP_002306898.1| - 3.3e-147 490.4 0.0 3.8e-147 490.2 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF521) DUF4828 PF16110.5 gi|212223662|ref|YP_002306898.1| - 0.097 13.2 0.2 12 6.5 0.0 3.0 4 0 0 4 4 4 0 Domain of unknown function (DUF4828) DUF4951 PF16309.5 gi|212223663|ref|YP_002306899.1| - 0.2 11.7 0.4 1.5 8.9 0.1 2.4 1 1 1 2 2 2 0 Domian of unknown function (DUF4951) LTD PF00932.19 gi|212223664|ref|YP_002306900.1| - 9.7e-28 96.8 1.7 1.3e-27 96.3 1.7 1.1 1 0 0 1 1 1 1 Lamin Tail Domain Class_IIIsignal PF04021.12 gi|212223664|ref|YP_002306900.1| - 0.0028 17.6 2.9 0.0028 17.6 2.9 1.7 2 0 0 2 2 2 1 Class III signal peptide Flp_Fap PF04964.14 gi|212223664|ref|YP_002306900.1| - 0.071 12.9 0.5 0.16 11.8 0.5 1.6 1 0 0 1 1 1 0 Flp/Fap pilin component PPC PF04151.15 gi|212223664|ref|YP_002306900.1| - 0.26 12.4 4.1 0.78 10.9 1.7 2.5 2 1 0 2 2 2 0 Bacterial pre-peptidase C-terminal domain Ribosomal_S13_N PF08069.12 gi|212223665|ref|YP_002306901.1| - 2.2e-27 94.8 0.2 9.4e-27 92.8 0.1 1.9 2 0 0 2 2 2 1 Ribosomal S13/S15 N-terminal domain Ribosomal_S15 PF00312.22 gi|212223665|ref|YP_002306901.1| - 1.5e-19 70.0 0.9 1.9e-19 69.6 0.9 1.2 1 0 0 1 1 1 1 Ribosomal protein S15 DUF5340 PF17275.2 gi|212223665|ref|YP_002306901.1| - 0.038 14.1 0.0 1 9.5 0.0 2.3 2 0 0 2 2 2 0 Family of unknown function (DUF5340) DHHA1 PF02272.19 gi|212223666|ref|YP_002306902.1| - 1.2e-20 74.4 1.4 3.6e-20 72.8 0.4 2.3 3 0 0 3 3 3 1 DHHA1 domain DHH PF01368.20 gi|212223666|ref|YP_002306902.1| - 0.00079 19.6 0.0 0.0016 18.6 0.0 1.5 1 0 0 1 1 1 1 DHH family Pcc1 PF09341.10 gi|212223667|ref|YP_002306903.1| - 0.0044 17.1 0.0 0.0047 17.0 0.0 1.2 1 0 0 1 1 1 1 Transcription factor Pcc1 Ribosomal_S3Ae PF01015.18 gi|212223668|ref|YP_002306904.1| - 1.1e-68 230.8 3.7 1.3e-68 230.6 3.7 1.0 1 0 0 1 1 1 1 Ribosomal S3Ae family SPOUT_MTase_2 PF14419.6 gi|212223669|ref|YP_002306905.1| - 1.6e-82 275.0 0.1 2.4e-82 274.4 0.1 1.3 1 0 0 1 1 1 1 AF2226-like SPOUT RNA Methylase fused to THUMP THUMP PF02926.17 gi|212223669|ref|YP_002306905.1| - 9.1e-28 97.2 1.7 2.4e-27 95.8 1.1 1.9 2 0 0 2 2 2 1 THUMP domain Methyltrn_RNA_4 PF09936.9 gi|212223669|ref|YP_002306905.1| - 0.012 15.5 0.0 0.022 14.7 0.0 1.4 1 0 0 1 1 1 0 SAM-dependent RNA methyltransferase DUF92 PF01940.16 gi|212223670|ref|YP_002306906.1| - 1.2e-51 175.5 9.6 1.8e-51 174.9 9.5 1.3 1 1 0 1 1 1 1 Integral membrane protein DUF92 HTH_24 PF13412.6 gi|212223671|ref|YP_002306907.1| - 7.4e-16 57.4 4.0 1.5e-15 56.5 4.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|212223671|ref|YP_002306907.1| - 1.7e-12 46.9 2.9 3.1e-12 46.1 2.9 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|212223671|ref|YP_002306907.1| - 1.3e-09 37.9 0.8 2.2e-09 37.1 0.2 1.7 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain MarR PF01047.22 gi|212223671|ref|YP_002306907.1| - 2.1e-07 30.7 0.7 5.1e-07 29.5 0.7 1.5 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.7 gi|212223671|ref|YP_002306907.1| - 2.6e-07 30.6 0.0 4.1e-07 29.9 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|212223671|ref|YP_002306907.1| - 2.7e-07 30.4 0.0 4e-07 29.8 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_28 PF13518.6 gi|212223671|ref|YP_002306907.1| - 1.1e-05 25.5 0.4 2e-05 24.6 0.4 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.19 gi|212223671|ref|YP_002306907.1| - 3.6e-05 23.6 0.0 9.2e-05 22.2 0.0 1.7 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_11 PF08279.12 gi|212223671|ref|YP_002306907.1| - 3.6e-05 23.6 0.6 3.6e-05 23.6 0.6 2.0 2 0 0 2 2 2 1 HTH domain AsnC_trans_reg PF01037.21 gi|212223671|ref|YP_002306907.1| - 4.6e-05 23.3 0.0 8.1e-05 22.5 0.0 1.4 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain Sigma70_r4 PF04545.16 gi|212223671|ref|YP_002306907.1| - 7.7e-05 22.1 0.4 0.00015 21.2 0.4 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_23 PF13384.6 gi|212223671|ref|YP_002306907.1| - 0.00014 21.5 0.7 0.00028 20.6 0.7 1.5 1 0 0 1 1 1 1 Homeodomain-like domain HTH_5 PF01022.20 gi|212223671|ref|YP_002306907.1| - 0.00015 21.6 0.0 0.00026 20.8 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family Crp PF00325.20 gi|212223671|ref|YP_002306907.1| - 0.00024 20.7 0.9 0.00041 19.9 0.9 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, crp family HTH_Mga PF08280.11 gi|212223671|ref|YP_002306907.1| - 0.00067 19.6 0.1 0.0019 18.2 0.1 1.7 1 0 0 1 1 1 1 M protein trans-acting positive regulator (MGA) HTH domain HTH_34 PF13601.6 gi|212223671|ref|YP_002306907.1| - 0.00086 19.4 0.1 0.0021 18.2 0.1 1.7 2 0 0 2 2 1 1 Winged helix DNA-binding domain Replic_Relax PF13814.6 gi|212223671|ref|YP_002306907.1| - 0.0046 17.0 0.1 0.0059 16.7 0.1 1.2 1 0 0 1 1 1 1 Replication-relaxation HTH_3 PF01381.22 gi|212223671|ref|YP_002306907.1| - 0.0052 16.8 0.6 0.014 15.5 0.6 1.8 1 0 0 1 1 1 1 Helix-turn-helix Rrf2 PF02082.20 gi|212223671|ref|YP_002306907.1| - 0.006 16.9 0.1 0.011 16.0 0.1 1.4 1 0 0 1 1 1 1 Transcriptional regulator HxlR PF01638.17 gi|212223671|ref|YP_002306907.1| - 0.0089 15.9 1.1 0.25 11.2 0.4 2.3 1 1 0 2 2 2 1 HxlR-like helix-turn-helix HTH_IclR PF09339.10 gi|212223671|ref|YP_002306907.1| - 0.011 15.5 0.1 0.017 14.9 0.1 1.2 1 0 0 1 1 1 0 IclR helix-turn-helix domain DUF977 PF06163.11 gi|212223671|ref|YP_002306907.1| - 0.022 14.7 0.1 0.053 13.5 0.1 1.6 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF977) HTH_19 PF12844.7 gi|212223671|ref|YP_002306907.1| - 0.023 14.7 0.8 0.047 13.7 0.8 1.7 1 1 0 1 1 1 0 Helix-turn-helix domain HTH_27 PF13463.6 gi|212223671|ref|YP_002306907.1| - 0.025 15.1 0.4 0.29 11.6 0.2 2.1 2 0 0 2 2 2 0 Winged helix DNA-binding domain GntR PF00392.21 gi|212223671|ref|YP_002306907.1| - 0.026 14.2 0.2 0.059 13.0 0.2 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_36 PF13730.6 gi|212223671|ref|YP_002306907.1| - 0.027 14.4 0.1 0.053 13.5 0.1 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_15 PF12324.8 gi|212223671|ref|YP_002306907.1| - 0.035 14.1 0.0 0.062 13.3 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain of alkylmercury lyase HTH_DeoR PF08220.12 gi|212223671|ref|YP_002306907.1| - 0.095 12.5 1.2 0.19 11.5 1.2 1.5 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain HTH_31 PF13560.6 gi|212223671|ref|YP_002306907.1| - 0.37 11.2 1.2 0.56 10.6 1.2 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain MazG PF03819.17 gi|212223672|ref|YP_002306908.1| - 6.6e-15 55.0 0.2 1e-14 54.5 0.2 1.2 1 0 0 1 1 1 1 MazG nucleotide pyrophosphohydrolase domain MazG-like PF12643.7 gi|212223672|ref|YP_002306908.1| - 0.0076 16.5 0.3 0.01 16.1 0.3 1.2 1 0 0 1 1 1 1 MazG-like family dUTPase_2 PF08761.11 gi|212223672|ref|YP_002306908.1| - 0.012 15.8 0.0 0.013 15.6 0.0 1.1 1 0 0 1 1 1 0 dUTPase PRA-PH PF01503.17 gi|212223672|ref|YP_002306908.1| - 0.023 15.1 0.1 0.028 14.8 0.1 1.2 1 0 0 1 1 1 0 Phosphoribosyl-ATP pyrophosphohydrolase HTH_5 PF01022.20 gi|212223673|ref|YP_002306909.1| - 3.4e-13 49.2 3.1 1.2e-12 47.5 1.0 2.1 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|212223673|ref|YP_002306909.1| - 1.2e-08 34.9 0.1 6.7e-08 32.5 0.0 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_24 PF13412.6 gi|212223673|ref|YP_002306909.1| - 0.012 15.2 1.5 12 5.5 0.0 3.2 3 0 0 3 3 3 0 Winged helix-turn-helix DNA-binding Dimerisation2 PF16864.5 gi|212223673|ref|YP_002306909.1| - 0.015 15.3 0.0 0.021 14.8 0.0 1.2 1 0 0 1 1 1 0 Dimerisation domain BrnA_antitoxin PF14384.6 gi|212223673|ref|YP_002306909.1| - 0.15 12.6 0.0 0.29 11.6 0.0 1.6 1 0 0 1 1 1 0 BrnA antitoxin of type II toxin-antitoxin system Prok-JAB PF14464.6 gi|212223674|ref|YP_002306910.1| - 3.1e-10 39.9 0.0 3.9e-10 39.5 0.0 1.1 1 0 0 1 1 1 1 Prokaryotic homologs of the JAB domain RadC PF04002.15 gi|212223674|ref|YP_002306910.1| - 0.14 12.1 0.0 0.21 11.6 0.0 1.3 1 0 0 1 1 1 0 RadC-like JAB domain Ribonuc_L-PSP PF01042.21 gi|212223675|ref|YP_002306911.1| - 4.6e-44 149.3 0.2 5.1e-44 149.2 0.2 1.0 1 0 0 1 1 1 1 Endoribonuclease L-PSP DUF2666 PF10869.8 gi|212223676|ref|YP_002306912.1| - 4.1e-55 185.7 6.0 5.6e-39 133.5 0.9 2.1 2 0 0 2 2 2 2 Protein of unknown function (DUF2666) DUF4846 PF16138.5 gi|212223676|ref|YP_002306912.1| - 0.02 14.4 0.0 0.045 13.2 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (4846) Lon_C PF05362.13 gi|212223677|ref|YP_002306913.1| - 1.3e-36 126.1 3.2 2.1e-36 125.4 3.2 1.3 1 0 0 1 1 1 1 Lon protease (S16) C-terminal proteolytic domain AAA_32 PF13654.6 gi|212223677|ref|YP_002306913.1| - 1e-29 103.8 0.0 8.1e-23 81.0 0.0 2.2 2 0 0 2 2 2 2 AAA domain Mg_chelatase PF01078.21 gi|212223677|ref|YP_002306913.1| - 2.1e-18 66.5 0.1 1.2e-09 37.9 0.1 2.4 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI Sigma54_activat PF00158.26 gi|212223677|ref|YP_002306913.1| - 2.2e-16 60.0 0.1 1.9e-09 37.5 0.0 2.6 2 0 0 2 2 2 2 Sigma-54 interaction domain AAA_5 PF07728.14 gi|212223677|ref|YP_002306913.1| - 4.7e-12 46.1 0.0 0.00013 22.0 0.0 2.7 2 0 0 2 2 2 2 AAA domain (dynein-related subfamily) ChlI PF13541.6 gi|212223677|ref|YP_002306913.1| - 2.3e-10 40.4 0.6 5.6e-10 39.1 0.6 1.7 1 0 0 1 1 1 1 Subunit ChlI of Mg-chelatase AAA PF00004.29 gi|212223677|ref|YP_002306913.1| - 1.5e-07 31.9 0.1 0.043 14.2 0.0 3.0 3 0 0 3 3 2 2 ATPase family associated with various cellular activities (AAA) MCM PF00493.23 gi|212223677|ref|YP_002306913.1| - 3.6e-07 29.5 0.0 0.02 14.0 0.0 2.5 2 0 0 2 2 2 2 MCM P-loop domain RuvB_N PF05496.12 gi|212223677|ref|YP_002306913.1| - 1.9e-06 27.7 0.1 0.051 13.3 0.1 2.6 2 0 0 2 2 2 2 Holliday junction DNA helicase RuvB P-loop domain AAA_22 PF13401.6 gi|212223677|ref|YP_002306913.1| - 3.6e-06 27.3 0.0 0.00086 19.6 0.0 3.0 3 0 0 3 3 3 1 AAA domain Sigma54_activ_2 PF14532.6 gi|212223677|ref|YP_002306913.1| - 1.4e-05 25.2 0.0 0.19 11.8 0.0 2.5 2 0 0 2 2 2 2 Sigma-54 interaction domain AAA_3 PF07726.11 gi|212223677|ref|YP_002306913.1| - 4.7e-05 23.2 0.1 0.07 13.0 0.0 2.5 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_7 PF12775.7 gi|212223677|ref|YP_002306913.1| - 0.0004 20.0 0.0 0.00085 18.9 0.0 1.5 1 0 0 1 1 1 1 P-loop containing dynein motor region AAA_16 PF13191.6 gi|212223677|ref|YP_002306913.1| - 0.00049 20.5 0.0 0.0013 19.1 0.0 1.7 1 0 0 1 1 1 1 AAA ATPase domain AAA_30 PF13604.6 gi|212223677|ref|YP_002306913.1| - 0.00058 19.6 0.0 0.037 13.7 0.0 2.4 2 0 0 2 2 2 1 AAA domain AAA_19 PF13245.6 gi|212223677|ref|YP_002306913.1| - 0.0009 19.6 0.3 0.011 16.0 0.3 2.4 1 1 0 1 1 1 1 AAA domain S_4TM PF18159.1 gi|212223677|ref|YP_002306913.1| - 0.0048 16.2 1.7 0.04 13.2 0.1 2.2 2 0 0 2 2 2 1 SMODS-associating 4TM effector domain NACHT PF05729.12 gi|212223677|ref|YP_002306913.1| - 0.0048 16.8 0.0 0.014 15.3 0.0 1.8 2 0 0 2 2 1 1 NACHT domain TIP49 PF06068.13 gi|212223677|ref|YP_002306913.1| - 0.0049 16.1 1.7 0.3 10.2 0.0 3.1 3 1 0 3 3 3 1 TIP49 P-loop domain AAA_PrkA PF08298.11 gi|212223677|ref|YP_002306913.1| - 0.0082 15.1 0.0 0.61 8.9 0.0 2.3 2 0 0 2 2 2 1 PrkA AAA domain PhoH PF02562.16 gi|212223677|ref|YP_002306913.1| - 0.028 13.9 0.0 0.078 12.4 0.0 1.7 1 0 0 1 1 1 0 PhoH-like protein AAA_2 PF07724.14 gi|212223677|ref|YP_002306913.1| - 0.028 14.5 0.3 21 5.2 0.0 3.5 3 1 0 3 3 3 0 AAA domain (Cdc48 subfamily) MMR_HSR1 PF01926.23 gi|212223677|ref|YP_002306913.1| - 0.043 13.9 0.1 13 5.9 0.1 2.6 2 0 0 2 2 2 0 50S ribosome-binding GTPase DUF815 PF05673.13 gi|212223677|ref|YP_002306913.1| - 0.057 12.6 0.0 0.21 10.7 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF815) AAA_lid_3 PF17862.1 gi|212223677|ref|YP_002306913.1| - 0.06 13.2 0.1 0.96 9.3 0.0 2.6 2 0 0 2 2 2 0 AAA+ lid domain IstB_IS21 PF01695.17 gi|212223677|ref|YP_002306913.1| - 0.067 12.9 0.0 0.19 11.5 0.0 1.7 2 0 0 2 2 1 0 IstB-like ATP binding protein AAA_29 PF13555.6 gi|212223677|ref|YP_002306913.1| - 0.071 12.9 0.0 0.21 11.4 0.0 1.8 1 0 0 1 1 1 0 P-loop containing region of AAA domain ABC_tran PF00005.27 gi|212223677|ref|YP_002306913.1| - 0.076 13.5 0.0 0.24 11.9 0.0 1.9 2 0 0 2 2 1 0 ABC transporter AAA_10 PF12846.7 gi|212223677|ref|YP_002306913.1| - 0.088 11.7 0.1 0.27 10.1 0.0 1.8 2 0 0 2 2 2 0 AAA-like domain FtsK_SpoIIIE PF01580.18 gi|212223677|ref|YP_002306913.1| - 0.11 11.9 0.1 0.49 9.7 0.0 2.1 2 0 0 2 2 2 0 FtsK/SpoIIIE family Parvo_NS1 PF01057.17 gi|212223677|ref|YP_002306913.1| - 0.2 10.7 0.0 0.34 10.0 0.0 1.3 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 Ac81 PF05820.11 gi|212223677|ref|YP_002306913.1| - 0.38 10.3 3.3 0.68 9.5 3.3 1.3 1 0 0 1 1 1 0 Baculoviridae AC81 ABC_tran PF00005.27 gi|212223678|ref|YP_002306914.1| - 6.8e-23 81.7 0.0 9.3e-23 81.3 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|212223678|ref|YP_002306914.1| - 8.8e-10 38.9 1.3 6.2e-05 22.9 0.1 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|212223678|ref|YP_002306914.1| - 6.4e-05 22.5 0.6 0.0087 15.5 0.2 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|212223678|ref|YP_002306914.1| - 0.00088 19.0 0.0 0.0016 18.1 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|212223678|ref|YP_002306914.1| - 0.0026 18.0 0.1 0.01 16.1 0.1 1.8 1 1 0 1 1 1 1 AAA domain AAA_27 PF13514.6 gi|212223678|ref|YP_002306914.1| - 0.0045 16.6 0.1 0.0085 15.7 0.1 1.4 1 0 0 1 1 1 1 AAA domain AAA_25 PF13481.6 gi|212223678|ref|YP_002306914.1| - 0.0057 16.3 0.2 0.022 14.4 0.2 2.2 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.6 gi|212223678|ref|YP_002306914.1| - 0.0065 17.0 0.2 0.0075 16.8 0.2 1.4 1 1 0 1 1 1 1 AAA domain IstB_IS21 PF01695.17 gi|212223678|ref|YP_002306914.1| - 0.022 14.5 0.1 1.3 8.7 0.0 2.2 2 0 0 2 2 2 0 IstB-like ATP binding protein RsgA_GTPase PF03193.16 gi|212223678|ref|YP_002306914.1| - 0.037 14.0 0.1 0.058 13.3 0.1 1.3 1 0 0 1 1 1 0 RsgA GTPase ATPase_2 PF01637.18 gi|212223678|ref|YP_002306914.1| - 0.099 12.5 0.0 0.18 11.7 0.0 1.4 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea RecA PF00154.21 gi|212223678|ref|YP_002306914.1| - 0.1 12.0 0.0 3.1 7.2 0.0 2.2 2 0 0 2 2 2 0 recA bacterial DNA recombination protein AAA_24 PF13479.6 gi|212223678|ref|YP_002306914.1| - 0.12 12.1 0.0 0.21 11.3 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.6 gi|212223678|ref|YP_002306914.1| - 0.2 11.8 0.0 0.27 11.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_13 PF13166.6 gi|212223678|ref|YP_002306914.1| - 0.28 9.8 0.0 0.98 8.0 0.0 1.7 2 0 0 2 2 2 0 AAA domain UPF0051 PF01458.17 gi|212223679|ref|YP_002306915.1| - 1.8e-53 181.4 0.0 2.4e-53 181.1 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) Virul_fac_BrkB PF03631.15 gi|212223680|ref|YP_002306916.1| - 0.0014 18.3 0.6 0.0016 18.1 0.6 1.0 1 0 0 1 1 1 1 Virulence factor BrkB DUF2304 PF10066.9 gi|212223680|ref|YP_002306916.1| - 0.0083 16.3 6.1 0.011 15.9 6.1 1.2 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2304) DUF4405 PF14358.6 gi|212223680|ref|YP_002306916.1| - 0.0086 16.6 7.3 0.012 16.1 7.3 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4405) Ferric_reduct PF01794.19 gi|212223680|ref|YP_002306916.1| - 0.014 15.5 1.6 0.018 15.2 1.6 1.2 1 0 0 1 1 1 0 Ferric reductase like transmembrane component DUF2207 PF09972.9 gi|212223680|ref|YP_002306916.1| - 0.03 13.1 1.8 0.032 13.0 1.8 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) DUF4079 PF13301.6 gi|212223680|ref|YP_002306916.1| - 0.037 14.2 0.3 0.043 14.0 0.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF4079) DDDD PF10161.9 gi|212223680|ref|YP_002306916.1| - 0.21 11.4 1.8 0.26 11.1 0.4 1.8 2 0 0 2 2 2 0 Putative mitochondrial precursor protein DUF3671 PF12420.8 gi|212223680|ref|YP_002306916.1| - 0.55 10.3 6.2 0.85 9.7 6.2 1.3 1 1 0 1 1 1 0 Protein of unknown function HycI PF01750.18 gi|212223681|ref|YP_002306917.1| - 6.6e-20 71.2 0.5 8e-20 71.0 0.5 1.1 1 0 0 1 1 1 1 Hydrogenase maturation protease CbiA PF01656.23 gi|212223681|ref|YP_002306917.1| - 0.063 13.3 0.0 0.077 13.1 0.0 1.1 1 0 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain NiFeSe_Hases PF00374.19 gi|212223682|ref|YP_002306918.1| - 1.6e-25 90.0 0.3 1.8e-12 46.9 0.0 3.3 2 2 1 3 3 3 3 Nickel-dependent hydrogenase Oxidored_q6 PF01058.22 gi|212223683|ref|YP_002306919.1| - 1.5e-25 89.5 0.0 2.7e-25 88.7 0.0 1.4 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit eIF2_C PF09173.11 gi|212223683|ref|YP_002306919.1| - 0.0075 16.5 0.0 0.014 15.6 0.0 1.4 1 0 0 1 1 1 1 Initiation factor eIF2 gamma, C terminal NAD_binding_1 PF00175.21 gi|212223684|ref|YP_002306920.1| - 8.8e-14 52.1 0.0 1.7e-13 51.2 0.0 1.5 1 0 0 1 1 1 1 Oxidoreductase NAD-binding domain DHODB_Fe-S_bind PF10418.9 gi|212223684|ref|YP_002306920.1| - 4.3e-13 48.8 1.8 9.4e-13 47.7 1.8 1.6 1 0 0 1 1 1 1 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B FAD_binding_6 PF00970.24 gi|212223684|ref|YP_002306920.1| - 2.3e-08 34.3 0.0 3.5e-08 33.7 0.0 1.3 1 0 0 1 1 1 1 Oxidoreductase FAD-binding domain NAD_binding_6 PF08030.12 gi|212223684|ref|YP_002306920.1| - 0.00038 20.6 0.0 0.043 13.9 0.0 2.1 1 1 1 2 2 2 2 Ferric reductase NAD binding domain FAD_binding_8 PF08022.12 gi|212223684|ref|YP_002306920.1| - 0.012 15.6 0.3 0.12 12.5 0.1 2.6 2 1 0 2 2 2 0 FAD-binding domain Fer4_22 PF17179.4 gi|212223685|ref|YP_002306921.1| - 1.5e-26 93.0 11.9 1.5e-26 93.0 11.9 2.0 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|212223685|ref|YP_002306921.1| - 2.4e-08 34.4 8.3 0.00054 20.5 2.2 2.6 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|212223685|ref|YP_002306921.1| - 2e-07 30.7 13.0 0.0014 18.6 2.2 2.8 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|212223685|ref|YP_002306921.1| - 2.5e-07 30.7 13.8 0.0017 18.5 2.1 2.7 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|212223685|ref|YP_002306921.1| - 4.3e-07 30.4 9.5 0.0059 17.1 0.2 2.8 3 0 0 3 3 2 2 4Fe-4S dicluster domain Fer4 PF00037.27 gi|212223685|ref|YP_002306921.1| - 2.2e-06 27.3 17.0 0.0024 17.6 3.8 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|212223685|ref|YP_002306921.1| - 5.2e-06 26.5 13.7 0.0089 16.2 1.6 2.7 2 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|212223685|ref|YP_002306921.1| - 1.8e-05 25.1 12.4 9e-05 22.8 12.4 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|212223685|ref|YP_002306921.1| - 5e-05 23.4 11.4 0.015 15.5 3.1 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|212223685|ref|YP_002306921.1| - 5.5e-05 23.3 4.3 0.068 13.4 0.2 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|212223685|ref|YP_002306921.1| - 7.3e-05 23.6 9.3 0.081 13.9 0.8 2.7 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_4 PF12800.7 gi|212223685|ref|YP_002306921.1| - 0.00045 20.5 1.2 0.00045 20.5 1.2 3.2 3 0 0 3 3 3 1 4Fe-4S binding domain Fer4_6 PF12837.7 gi|212223685|ref|YP_002306921.1| - 0.011 15.7 20.6 0.018 15.1 3.6 2.9 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_13 PF13370.6 gi|212223685|ref|YP_002306921.1| - 6.4 7.4 15.6 14 6.3 1.7 2.6 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Form_Nir_trans PF01226.17 gi|212223686|ref|YP_002306922.1| - 8.4e-72 241.3 26.4 8.4e-72 241.3 26.4 1.4 2 0 0 2 2 2 1 Formate/nitrite transporter Molybdopterin PF00384.22 gi|212223687|ref|YP_002306923.1| - 2.2e-105 353.1 0.0 2.7e-105 352.9 0.0 1.1 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.21 gi|212223687|ref|YP_002306923.1| - 6e-28 97.1 0.0 1e-27 96.3 0.0 1.4 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.16 gi|212223687|ref|YP_002306923.1| - 2.9e-09 36.8 0.2 5.5e-09 35.9 0.2 1.4 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain LppX_LprAFG PF07161.13 gi|212223687|ref|YP_002306923.1| - 0.055 13.3 0.0 0.1 12.5 0.0 1.3 1 0 0 1 1 1 0 LppX_LprAFG lipoprotein CDC48_N PF02359.18 gi|212223687|ref|YP_002306923.1| - 0.063 13.5 0.0 0.34 11.1 0.0 2.2 2 0 0 2 2 2 0 Cell division protein 48 (CDC48), N-terminal domain Fer4_11 PF13247.6 gi|212223688|ref|YP_002306924.1| - 4e-25 87.8 11.4 4e-25 87.8 11.4 1.6 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|212223688|ref|YP_002306924.1| - 6.9e-13 48.1 40.3 4.5e-07 29.7 4.4 4.9 4 1 0 4 4 4 3 4Fe-4S binding domain Fer4 PF00037.27 gi|212223688|ref|YP_002306924.1| - 9.7e-13 47.4 42.4 1.2e-06 28.1 5.1 5.5 6 0 0 6 6 6 4 4Fe-4S binding domain Fer4_9 PF13187.6 gi|212223688|ref|YP_002306924.1| - 1.6e-10 40.9 27.1 2.1e-05 24.6 8.6 2.7 1 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|212223688|ref|YP_002306924.1| - 1.7e-10 41.3 34.1 1.2e-06 29.0 13.7 3.8 2 2 2 4 4 4 3 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|212223688|ref|YP_002306924.1| - 3.2e-10 40.0 28.0 2.1e-05 24.5 10.4 3.4 2 2 2 4 4 4 4 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|212223688|ref|YP_002306924.1| - 6.1e-09 35.5 35.9 8.1e-05 22.5 2.2 4.5 4 1 0 4 4 4 3 4Fe-4S binding domain Fer4_21 PF14697.6 gi|212223688|ref|YP_002306924.1| - 4.1e-07 30.0 35.2 2.7e-05 24.2 12.3 4.0 2 1 2 4 4 4 3 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|212223688|ref|YP_002306924.1| - 2.2e-06 28.2 38.3 0.059 14.3 4.6 4.3 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_16 PF13484.6 gi|212223688|ref|YP_002306924.1| - 2.3e-06 28.4 32.2 0.0072 17.2 2.9 4.7 4 1 1 5 5 5 3 4Fe-4S double cluster binding domain Fer4_4 PF12800.7 gi|212223688|ref|YP_002306924.1| - 0.00026 21.3 35.4 0.018 15.5 2.0 4.7 4 1 0 4 4 4 3 4Fe-4S binding domain Fer4_17 PF13534.6 gi|212223688|ref|YP_002306924.1| - 0.00078 19.9 30.5 0.31 11.6 1.8 4.5 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|212223688|ref|YP_002306924.1| - 0.01 16.0 5.1 0.01 16.0 5.1 4.0 2 1 2 4 4 4 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|212223688|ref|YP_002306924.1| - 0.11 13.1 2.9 0.11 13.1 2.9 4.6 3 1 1 5 5 5 0 4Fe-4S single cluster domain of Ferredoxin I Churchill PF06573.11 gi|212223688|ref|YP_002306924.1| - 0.23 11.8 7.9 0.36 11.2 6.9 1.8 1 1 1 2 2 2 0 Churchill protein Fer4_8 PF13183.6 gi|212223688|ref|YP_002306924.1| - 0.24 11.8 34.3 26 5.3 11.6 4.3 2 2 0 2 2 2 0 4Fe-4S dicluster domain Fer4_20 PF14691.6 gi|212223688|ref|YP_002306924.1| - 1.3 8.8 28.9 2.2 8.1 5.2 4.0 1 1 3 4 4 4 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_15 PF13459.6 gi|212223688|ref|YP_002306924.1| - 3.6 8.4 29.2 0.23 12.2 10.1 4.7 4 1 0 4 4 4 0 4Fe-4S single cluster domain Fer4_7 PF12838.7 gi|212223689|ref|YP_002306925.1| - 6.7e-10 39.4 10.4 6.7e-10 39.4 10.4 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|212223689|ref|YP_002306925.1| - 1.5e-08 34.3 21.0 3.8e-05 23.6 3.8 3.3 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|212223689|ref|YP_002306925.1| - 3.2e-08 34.4 15.7 5e-05 24.1 0.7 2.6 2 1 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4 PF00037.27 gi|212223689|ref|YP_002306925.1| - 3.1e-07 29.9 3.9 3.1e-07 29.9 3.9 4.0 4 1 0 4 4 4 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|212223689|ref|YP_002306925.1| - 7.7e-07 29.1 29.8 6.3e-06 26.2 13.0 2.6 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|212223689|ref|YP_002306925.1| - 2.8e-06 27.4 16.7 0.00052 20.1 1.0 2.9 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|212223689|ref|YP_002306925.1| - 1.5e-05 24.8 12.9 0.00024 21.0 2.8 3.2 4 0 0 4 4 3 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|212223689|ref|YP_002306925.1| - 7.6e-05 22.8 9.7 7.6e-05 22.8 9.7 1.9 1 1 2 3 3 3 1 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|212223689|ref|YP_002306925.1| - 0.0017 18.7 1.7 0.0017 18.7 1.7 3.3 3 0 0 3 3 3 1 4Fe-4S binding domain Fer4_17 PF13534.6 gi|212223689|ref|YP_002306925.1| - 0.007 16.9 16.9 0.018 15.6 2.1 2.9 2 1 0 2 2 2 1 4Fe-4S dicluster domain DUF2197 PF09963.9 gi|212223689|ref|YP_002306925.1| - 0.022 15.0 0.4 0.022 15.0 0.4 2.0 3 0 0 3 3 1 0 Uncharacterized protein conserved in bacteria (DUF2197) Fer4_8 PF13183.6 gi|212223689|ref|YP_002306925.1| - 0.03 14.7 2.3 0.03 14.7 2.3 3.0 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|212223689|ref|YP_002306925.1| - 0.083 13.7 2.0 0.083 13.7 2.0 2.7 2 1 1 3 3 3 0 4Fe-4S dicluster domain Fer4_11 PF13247.6 gi|212223689|ref|YP_002306925.1| - 0.099 12.8 6.1 0.038 14.1 3.7 1.6 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_19 PF06902.11 gi|212223689|ref|YP_002306925.1| - 0.29 11.2 4.7 0.56 10.3 4.7 1.5 1 0 0 1 1 1 0 Divergent 4Fe-4S mono-cluster SCIFF PF13165.6 gi|212223689|ref|YP_002306925.1| - 0.59 10.1 7.6 0.83 9.6 0.6 2.6 2 0 0 2 2 2 0 Six-cysteine peptide SCIFF Fer4_3 PF12798.7 gi|212223689|ref|YP_002306925.1| - 0.59 11.2 26.2 0.24 12.4 3.7 2.8 3 0 0 3 3 2 0 4Fe-4S binding domain C1_1 PF00130.22 gi|212223689|ref|YP_002306925.1| - 5.5 7.0 13.0 7.7 6.5 0.5 3.0 2 2 0 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) Fer4_15 PF13459.6 gi|212223689|ref|YP_002306925.1| - 8 7.3 14.2 45 4.9 12.0 2.7 1 1 1 2 2 2 0 4Fe-4S single cluster domain Pyr_redox_2 PF07992.14 gi|212223690|ref|YP_002306926.1| - 1.9e-37 129.1 0.1 2.3e-37 128.8 0.1 1.0 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|212223690|ref|YP_002306926.1| - 2.4e-11 43.4 0.1 2.5e-08 33.5 0.0 2.7 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FMO-like PF00743.19 gi|212223690|ref|YP_002306926.1| - 3.4e-08 32.4 0.0 0.00066 18.2 0.0 3.0 2 1 0 3 3 3 2 Flavin-binding monooxygenase-like NAD_binding_8 PF13450.6 gi|212223690|ref|YP_002306926.1| - 6e-07 29.6 0.1 3.6e-06 27.1 0.0 2.3 3 0 0 3 3 2 1 NAD(P)-binding Rossmann-like domain Pyr_redox PF00070.27 gi|212223690|ref|YP_002306926.1| - 8e-07 29.5 0.9 0.012 16.2 0.2 2.4 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase AlaDh_PNT_C PF01262.21 gi|212223690|ref|YP_002306926.1| - 6.4e-06 25.6 0.2 0.092 12.0 0.0 2.8 3 0 0 3 3 3 2 Alanine dehydrogenase/PNT, C-terminal domain FAD_binding_2 PF00890.24 gi|212223690|ref|YP_002306926.1| - 0.00054 19.1 1.9 0.072 12.2 0.1 3.8 4 0 0 4 4 4 1 FAD binding domain HI0933_like PF03486.14 gi|212223690|ref|YP_002306926.1| - 0.0006 18.6 0.1 0.0012 17.6 0.1 1.5 1 0 0 1 1 1 1 HI0933-like protein Shikimate_DH PF01488.20 gi|212223690|ref|YP_002306926.1| - 0.0008 19.5 0.0 2.2 8.4 0.0 3.4 3 0 0 3 3 3 1 Shikimate / quinate 5-dehydrogenase FAD_binding_3 PF01494.19 gi|212223690|ref|YP_002306926.1| - 0.0023 17.3 0.5 0.013 14.8 0.1 2.1 2 0 0 2 2 2 1 FAD binding domain NAD_binding_7 PF13241.6 gi|212223690|ref|YP_002306926.1| - 0.0034 17.8 0.1 4.4 7.8 0.0 2.5 2 1 0 2 2 2 2 Putative NAD(P)-binding FAD_oxidored PF12831.7 gi|212223690|ref|YP_002306926.1| - 0.0056 16.1 0.2 0.38 10.0 0.0 2.8 3 0 0 3 3 3 1 FAD dependent oxidoreductase GIDA PF01134.22 gi|212223690|ref|YP_002306926.1| - 0.0078 15.3 1.3 2.3 7.2 0.2 2.7 3 0 0 3 3 3 2 Glucose inhibited division protein A 2-Hacid_dh_C PF02826.19 gi|212223690|ref|YP_002306926.1| - 0.011 15.2 0.1 1.7 8.0 0.0 2.6 3 0 0 3 3 3 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DAO PF01266.24 gi|212223690|ref|YP_002306926.1| - 0.011 15.3 2.6 0.38 10.3 0.2 3.0 2 1 0 3 3 3 0 FAD dependent oxidoreductase NAD_binding_9 PF13454.6 gi|212223690|ref|YP_002306926.1| - 0.032 14.2 0.2 0.42 10.6 0.2 2.6 3 0 0 3 3 3 0 FAD-NAD(P)-binding Thi4 PF01946.17 gi|212223690|ref|YP_002306926.1| - 0.051 12.8 0.1 0.15 11.3 0.0 1.8 2 0 0 2 2 2 0 Thi4 family MCRA PF06100.11 gi|212223690|ref|YP_002306926.1| - 0.1 11.4 0.0 0.14 10.9 0.0 1.1 1 0 0 1 1 1 0 MCRA family 3HCDH_N PF02737.18 gi|212223690|ref|YP_002306926.1| - 0.13 12.1 0.1 0.33 10.8 0.0 1.7 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain K_oxygenase PF13434.6 gi|212223690|ref|YP_002306926.1| - 0.22 10.6 0.0 5.4 6.1 0.0 2.6 3 1 0 3 3 3 0 L-lysine 6-monooxygenase (NADPH-requiring) Fer4_11 PF13247.6 gi|212223691|ref|YP_002306927.1| - 4.3e-27 94.2 9.7 7.3e-27 93.4 9.7 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|212223691|ref|YP_002306927.1| - 4.4e-14 51.6 42.0 1.8e-07 30.7 4.5 5.6 6 0 0 6 6 6 4 4Fe-4S binding domain Fer4_6 PF12837.7 gi|212223691|ref|YP_002306927.1| - 6.6e-13 48.1 41.7 3.8e-07 29.9 3.8 5.0 4 1 0 4 4 3 3 4Fe-4S binding domain Fer4_7 PF12838.7 gi|212223691|ref|YP_002306927.1| - 5.7e-12 46.0 31.5 4.1e-07 30.5 12.2 4.1 2 2 2 4 4 4 4 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|212223691|ref|YP_002306927.1| - 3.5e-11 43.1 48.1 1.4e-06 28.4 9.3 3.2 1 1 3 4 4 4 4 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|212223691|ref|YP_002306927.1| - 8.2e-10 38.7 31.7 8.5e-06 25.8 13.5 3.6 1 1 3 4 4 4 3 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|212223691|ref|YP_002306927.1| - 1.3e-08 34.4 35.5 2.5e-05 24.1 1.7 4.4 4 1 0 4 4 4 3 4Fe-4S binding domain Fer4_16 PF13484.6 gi|212223691|ref|YP_002306927.1| - 2.3e-07 31.6 29.4 0.21 12.5 4.6 5.1 4 1 1 5 5 5 4 4Fe-4S double cluster binding domain Fer4_3 PF12798.7 gi|212223691|ref|YP_002306927.1| - 3.6e-06 27.5 41.6 0.09 13.8 4.9 4.2 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_21 PF14697.6 gi|212223691|ref|YP_002306927.1| - 1e-05 25.6 28.6 0.00024 21.1 10.6 3.9 3 1 1 4 4 4 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|212223691|ref|YP_002306927.1| - 5.7e-05 23.6 28.4 0.092 13.3 1.7 4.5 2 1 2 4 4 4 3 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|212223691|ref|YP_002306927.1| - 0.00027 21.2 34.4 0.0027 18.1 2.2 4.6 5 0 0 5 5 5 3 4Fe-4S binding domain Fer4_15 PF13459.6 gi|212223691|ref|YP_002306927.1| - 0.082 13.6 25.9 0.58 10.9 9.5 4.1 2 2 0 2 2 2 0 4Fe-4S single cluster domain Fer4_8 PF13183.6 gi|212223691|ref|YP_002306927.1| - 0.13 12.8 31.3 0.18 12.3 0.4 4.4 2 1 2 5 5 5 0 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|212223691|ref|YP_002306927.1| - 3.8 7.8 22.8 1.5 9.1 7.6 3.5 2 1 1 3 3 3 0 4Fe-4S dicluster domain Fe-ADH PF00465.19 gi|212223692|ref|YP_002306928.1| - 6.2e-96 321.4 0.1 7.2e-96 321.2 0.1 1.0 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH_2 PF13685.6 gi|212223692|ref|YP_002306928.1| - 8e-13 48.7 0.0 2.6e-07 30.6 0.0 2.3 2 0 0 2 2 2 2 Iron-containing alcohol dehydrogenase Peripla_BP_6 PF13458.6 gi|212223692|ref|YP_002306928.1| - 0.0014 18.3 0.1 0.0046 16.7 0.0 1.7 2 0 0 2 2 2 1 Periplasmic binding protein NGP1NT PF08153.12 gi|212223692|ref|YP_002306928.1| - 0.21 11.7 0.0 0.35 11.0 0.0 1.3 1 0 0 1 1 1 0 NGP1NT (NUC091) domain SPC25 PF06703.11 gi|212223693|ref|YP_002306929.1| - 0.086 12.6 2.5 0.099 12.4 2.5 1.0 1 0 0 1 1 1 0 Microsomal signal peptidase 25 kDa subunit (SPC25) 2TM PF13239.6 gi|212223693|ref|YP_002306929.1| - 0.2 12.0 1.7 0.23 11.8 1.7 1.1 1 0 0 1 1 1 0 2TM domain Peripla_BP_2 PF01497.18 gi|212223694|ref|YP_002306930.1| - 7.1e-80 268.0 0.9 1.9e-40 138.9 0.1 2.1 2 0 0 2 2 2 2 Periplasmic binding protein NPV_P10 PF05531.12 gi|212223694|ref|YP_002306930.1| - 0.17 12.4 0.7 0.97 9.9 0.1 2.2 2 0 0 2 2 2 0 Nucleopolyhedrovirus P10 protein Alpha_GJ PF03229.13 gi|212223694|ref|YP_002306930.1| - 3.8 8.1 7.2 8.6 6.9 7.2 1.6 1 0 0 1 1 1 0 Alphavirus glycoprotein J ABC_transp_aux PF09822.9 gi|212223695|ref|YP_002306931.1| - 0.0034 16.9 0.0 0.0051 16.3 0.0 1.3 1 0 0 1 1 1 1 ABC-type uncharacterized transport system DUF4350 PF14258.6 gi|212223695|ref|YP_002306931.1| - 0.12 12.9 0.6 0.29 11.6 0.0 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4350) CBS PF00571.28 gi|212223696|ref|YP_002306932.1| - 1.5e-21 76.6 4.0 8e-13 48.6 0.2 2.3 2 0 0 2 2 2 2 CBS domain HTH_3 PF01381.22 gi|212223696|ref|YP_002306932.1| - 7.3e-15 54.8 0.7 1.6e-14 53.7 0.7 1.5 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.7 gi|212223696|ref|YP_002306932.1| - 4e-12 46.0 0.6 9.3e-12 44.8 0.3 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_31 PF13560.6 gi|212223696|ref|YP_002306932.1| - 2.8e-11 43.6 0.2 4.2e-11 43.0 0.2 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain MqsA_antitoxin PF15731.5 gi|212223696|ref|YP_002306932.1| - 5.8e-05 23.2 0.0 0.00014 21.9 0.0 1.7 1 0 0 1 1 1 1 Antitoxin component of bacterial toxin-antitoxin system, MqsA HTH_25 PF13413.6 gi|212223696|ref|YP_002306932.1| - 0.00015 21.6 0.2 0.00031 20.5 0.2 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_26 PF13443.6 gi|212223696|ref|YP_002306932.1| - 0.00021 21.6 0.2 0.00059 20.2 0.1 1.7 2 0 0 2 2 2 1 Cro/C1-type HTH DNA-binding domain HTH_37 PF13744.6 gi|212223696|ref|YP_002306932.1| - 0.00031 20.6 0.0 0.00066 19.6 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.6 gi|212223696|ref|YP_002306932.1| - 0.086 12.4 0.2 1.1 8.9 0.0 2.7 3 0 0 3 3 3 0 Winged helix-turn-helix DNA-binding Aldedh PF00171.22 gi|212223696|ref|YP_002306932.1| - 0.097 11.2 0.0 0.14 10.7 0.0 1.2 1 0 0 1 1 1 0 Aldehyde dehydrogenase family EamA PF00892.20 gi|212223697|ref|YP_002306933.1| - 4.4e-48 162.9 39.3 2.9e-24 85.8 12.0 2.0 2 0 0 2 2 2 2 EamA-like transporter family Sugar_transport PF06800.12 gi|212223697|ref|YP_002306933.1| - 6.1e-10 38.9 19.8 7.3e-10 38.6 19.8 1.1 1 0 0 1 1 1 1 Sugar transport protein TPT PF03151.16 gi|212223697|ref|YP_002306933.1| - 2.7e-08 33.5 18.1 9.8e-06 25.1 10.2 2.1 1 1 1 2 2 2 2 Triose-phosphate Transporter family TMEM234 PF10639.9 gi|212223697|ref|YP_002306933.1| - 0.16 12.0 15.0 1.8 8.6 0.3 3.3 3 1 0 3 3 3 0 Putative transmembrane family 234 UbiA PF01040.18 gi|212223698|ref|YP_002306934.1| - 1.8e-24 86.4 11.9 2.5e-24 86.0 11.9 1.2 1 0 0 1 1 1 1 UbiA prenyltransferase family Cornichon PF03311.14 gi|212223698|ref|YP_002306934.1| - 0.00016 22.0 0.5 0.00016 22.0 0.5 2.3 4 0 0 4 4 4 1 Cornichon protein DUF5348 PF17295.2 gi|212223698|ref|YP_002306934.1| - 0.035 14.0 0.2 0.069 13.1 0.2 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF5348) PMT_4TMC PF16192.5 gi|212223698|ref|YP_002306934.1| - 0.91 9.1 10.5 0.031 13.9 1.1 2.9 2 1 0 3 3 3 0 C-terminal four TMM region of protein-O-mannosyltransferase DUF4191 PF13829.6 gi|212223698|ref|YP_002306934.1| - 0.96 8.7 2.9 16 4.7 1.5 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4191) DUF1724 PF08350.10 gi|212223699|ref|YP_002306935.1| - 5.9e-20 71.2 0.0 1e-19 70.4 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF1724) HTH_5 PF01022.20 gi|212223699|ref|YP_002306935.1| - 3.3e-05 23.7 0.7 5.7e-05 22.9 0.7 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family TrmB PF01978.19 gi|212223699|ref|YP_002306935.1| - 0.0088 15.9 0.3 0.28 11.1 0.0 2.4 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.10 gi|212223699|ref|YP_002306935.1| - 0.027 14.3 0.0 0.046 13.5 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain HxlR PF01638.17 gi|212223699|ref|YP_002306935.1| - 0.027 14.3 0.5 0.23 11.3 0.1 2.5 2 1 0 2 2 2 0 HxlR-like helix-turn-helix DUF1495 PF07381.11 gi|212223699|ref|YP_002306935.1| - 0.096 12.5 0.1 15 5.5 0.1 2.6 1 1 2 3 3 3 0 Winged helix DNA-binding domain (DUF1495) ATPase PF06745.13 gi|212223700|ref|YP_002306936.1| - 0.00096 18.6 0.0 0.004 16.5 0.0 1.8 1 1 0 1 1 1 1 KaiC TrkA_N PF02254.18 gi|212223702|ref|YP_002306938.1| - 2.3e-20 73.0 1.5 6.4e-20 71.5 0.8 2.1 2 0 0 2 2 2 1 TrkA-N domain DHHA1 PF02272.19 gi|212223702|ref|YP_002306938.1| - 7.4e-15 55.6 5.9 5.4e-14 52.8 0.3 3.2 2 1 0 3 3 3 1 DHHA1 domain DHH PF01368.20 gi|212223702|ref|YP_002306938.1| - 2.4e-08 34.1 0.0 6e-08 32.9 0.0 1.7 1 0 0 1 1 1 1 DHH family Sacchrp_dh_NADP PF03435.18 gi|212223702|ref|YP_002306938.1| - 0.00035 20.9 0.2 0.001 19.3 0.2 1.8 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain NmrA PF05368.13 gi|212223702|ref|YP_002306938.1| - 0.00038 20.1 0.5 0.00071 19.2 0.1 1.6 2 0 0 2 2 2 1 NmrA-like family ApbA PF02558.16 gi|212223702|ref|YP_002306938.1| - 0.00059 19.5 0.1 0.0012 18.5 0.1 1.5 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA NAD_binding_7 PF13241.6 gi|212223702|ref|YP_002306938.1| - 0.0059 17.0 0.2 0.018 15.4 0.1 2.0 1 1 1 2 2 2 1 Putative NAD(P)-binding AdoHcyase_NAD PF00670.21 gi|212223702|ref|YP_002306938.1| - 0.043 13.9 0.3 0.043 13.9 0.3 2.9 3 0 0 3 3 3 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain Glycos_transf_1 PF00534.20 gi|212223702|ref|YP_002306938.1| - 0.06 12.9 0.0 0.14 11.6 0.0 1.5 1 0 0 1 1 1 0 Glycosyl transferases group 1 F420_oxidored PF03807.17 gi|212223702|ref|YP_002306938.1| - 0.08 13.5 1.4 0.35 11.5 1.4 2.2 1 1 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent CbiJ PF02571.14 gi|212223702|ref|YP_002306938.1| - 0.094 12.2 0.1 0.17 11.3 0.1 1.4 1 0 0 1 1 1 0 Precorrin-6x reductase CbiJ/CobK PTPS PF01242.19 gi|212223702|ref|YP_002306938.1| - 0.22 11.5 0.4 0.78 9.7 0.0 2.0 2 0 0 2 2 2 0 6-pyruvoyl tetrahydropterin synthase PRC PF05239.16 gi|212223703|ref|YP_002306939.1| - 2.1e-13 50.1 1.8 2.3e-13 50.0 1.8 1.0 1 0 0 1 1 1 1 PRC-barrel domain DUF624 PF04854.14 gi|212223704|ref|YP_002306940.1| - 0.21 11.7 5.0 0.06 13.5 1.3 2.3 2 1 0 2 2 2 0 Protein of unknown function, DUF624 DUF1097 PF06496.11 gi|212223704|ref|YP_002306940.1| - 1.1 9.4 18.4 0.068 13.3 1.6 2.6 2 1 0 2 2 2 0 Protein of unknown function (DUF1097) Peptidase_M50B PF13398.6 gi|212223704|ref|YP_002306940.1| - 1.2 8.7 13.4 0.068 12.8 5.5 2.2 1 1 1 2 2 2 0 Peptidase M50B-like EamA PF00892.20 gi|212223704|ref|YP_002306940.1| - 2.6 8.2 19.5 3.8 7.7 7.0 2.8 1 1 2 3 3 3 0 EamA-like transporter family Ndc1_Nup PF09531.10 gi|212223704|ref|YP_002306940.1| - 4.4 5.9 5.5 6.3 5.4 5.5 1.4 1 1 0 1 1 1 0 Nucleoporin protein Ndc1-Nup CTP-dep_RFKase PF01982.16 gi|212223705|ref|YP_002306941.1| - 2.2e-35 121.3 0.0 3.1e-35 120.9 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF120 HTH_Crp_2 PF13545.6 gi|212223705|ref|YP_002306941.1| - 1.1e-08 34.9 0.1 2.2e-08 33.9 0.1 1.5 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_24 PF13412.6 gi|212223705|ref|YP_002306941.1| - 3.5e-08 32.9 0.5 1.1e-07 31.3 0.5 2.0 1 1 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|212223705|ref|YP_002306941.1| - 1.5e-06 28.0 0.0 3.2e-06 26.9 0.0 1.5 1 0 0 1 1 1 1 MarR family MarR PF01047.22 gi|212223705|ref|YP_002306941.1| - 2e-06 27.6 0.2 3.1e-06 27.0 0.2 1.3 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.10 gi|212223705|ref|YP_002306941.1| - 0.00011 21.9 0.1 0.00017 21.3 0.1 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_29 PF13551.6 gi|212223705|ref|YP_002306941.1| - 0.00023 21.1 0.0 0.00039 20.4 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn helix Fe_dep_repress PF01325.19 gi|212223705|ref|YP_002306941.1| - 0.00036 20.7 0.0 0.00069 19.8 0.0 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_28 PF13518.6 gi|212223705|ref|YP_002306941.1| - 0.00049 20.2 0.0 0.0011 19.1 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.6 gi|212223705|ref|YP_002306941.1| - 0.001 18.8 0.0 0.0024 17.6 0.0 1.7 1 0 0 1 1 1 1 Homeodomain-like domain HTH_11 PF08279.12 gi|212223705|ref|YP_002306941.1| - 0.0014 18.5 0.2 0.0034 17.3 0.2 1.6 1 1 0 1 1 1 1 HTH domain HTH_AsnC-type PF13404.6 gi|212223705|ref|YP_002306941.1| - 0.0017 18.2 0.0 0.0081 16.0 0.0 2.1 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain Rrf2 PF02082.20 gi|212223705|ref|YP_002306941.1| - 0.0021 18.3 0.1 0.0037 17.6 0.1 1.3 1 0 0 1 1 1 1 Transcriptional regulator SgrR_N PF12793.7 gi|212223705|ref|YP_002306941.1| - 0.0024 18.1 0.0 0.0035 17.6 0.0 1.2 1 0 0 1 1 1 1 Sugar transport-related sRNA regulator N-term GntR PF00392.21 gi|212223705|ref|YP_002306941.1| - 0.0025 17.4 0.1 0.0045 16.6 0.1 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_DeoR PF08220.12 gi|212223705|ref|YP_002306941.1| - 0.0045 16.7 0.0 0.0091 15.7 0.0 1.5 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_10 PF04967.12 gi|212223705|ref|YP_002306941.1| - 0.0048 16.7 0.0 0.0088 15.8 0.0 1.4 1 0 0 1 1 1 1 HTH DNA binding domain FeoC PF09012.10 gi|212223705|ref|YP_002306941.1| - 0.005 16.9 0.0 0.0073 16.4 0.0 1.3 1 0 0 1 1 1 1 FeoC like transcriptional regulator IF2_N PF04760.15 gi|212223705|ref|YP_002306941.1| - 0.0066 16.2 0.1 0.014 15.2 0.1 1.4 1 0 0 1 1 1 1 Translation initiation factor IF-2, N-terminal region TrmB PF01978.19 gi|212223705|ref|YP_002306941.1| - 0.0097 15.8 0.1 0.016 15.0 0.1 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.7 gi|212223705|ref|YP_002306941.1| - 0.01 15.9 0.1 0.023 14.7 0.1 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain B-block_TFIIIC PF04182.12 gi|212223705|ref|YP_002306941.1| - 0.012 15.8 0.1 0.021 15.0 0.1 1.3 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC HTH_5 PF01022.20 gi|212223705|ref|YP_002306941.1| - 0.012 15.5 1.5 0.028 14.3 1.5 1.7 1 1 0 1 1 1 0 Bacterial regulatory protein, arsR family DUF4364 PF14277.6 gi|212223705|ref|YP_002306941.1| - 0.016 14.9 0.0 0.025 14.3 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) HTH_3 PF01381.22 gi|212223705|ref|YP_002306941.1| - 0.036 14.1 0.0 0.098 12.7 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix HTH_17 PF12728.7 gi|212223705|ref|YP_002306941.1| - 0.036 14.2 0.0 0.13 12.5 0.0 2.0 2 0 0 2 2 1 0 Helix-turn-helix domain Crp PF00325.20 gi|212223705|ref|YP_002306941.1| - 0.038 13.7 0.1 0.098 12.3 0.1 1.8 2 0 0 2 2 2 0 Bacterial regulatory proteins, crp family PadR PF03551.14 gi|212223705|ref|YP_002306941.1| - 0.042 13.8 0.1 0.063 13.3 0.1 1.3 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family DED PF01335.21 gi|212223705|ref|YP_002306941.1| - 0.049 13.9 0.8 5 7.5 0.6 2.7 2 1 0 2 2 2 0 Death effector domain HTH_38 PF13936.6 gi|212223705|ref|YP_002306941.1| - 0.083 12.7 0.0 0.19 11.5 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_27 PF13463.6 gi|212223705|ref|YP_002306941.1| - 0.11 13.0 0.1 0.22 12.0 0.1 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain RepL PF05732.11 gi|212223705|ref|YP_002306941.1| - 0.12 11.8 0.0 0.16 11.4 0.0 1.2 1 0 0 1 1 1 0 Firmicute plasmid replication protein (RepL) LexA_DNA_bind PF01726.16 gi|212223705|ref|YP_002306941.1| - 0.21 11.4 3.6 2.4 8.0 0.0 3.0 3 0 0 3 3 3 0 LexA DNA binding domain Endonuclease_5 PF04493.14 gi|212223706|ref|YP_002306942.1| - 6.9e-41 140.1 0.0 1.2e-33 116.5 0.0 2.0 1 1 1 2 2 2 2 Endonuclease V Translin PF01997.16 gi|212223707|ref|YP_002306943.1| - 2.4e-13 50.5 0.1 8.5e-12 45.5 0.1 2.1 1 1 0 1 1 1 1 Translin family AdoMet_Synthase PF01941.19 gi|212223708|ref|YP_002306944.1| - 1.3e-179 597.1 6.8 1.5e-179 596.9 6.8 1.0 1 0 0 1 1 1 1 S-adenosylmethionine synthetase (AdoMet synthetase) SipA_VBS PF17985.1 gi|212223708|ref|YP_002306944.1| - 0.019 14.8 2.0 0.031 14.1 0.5 2.2 2 0 0 2 2 2 0 SipA vinculin binding site S-AdoMet_synt_N PF00438.20 gi|212223708|ref|YP_002306944.1| - 0.028 15.1 0.0 0.2 12.3 0.0 2.4 2 0 0 2 2 2 0 S-adenosylmethionine synthetase, N-terminal domain AAA_18 PF13238.6 gi|212223710|ref|YP_002306946.1| - 1.1e-20 74.5 0.1 2.2e-20 73.5 0.1 1.5 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.6 gi|212223710|ref|YP_002306946.1| - 1.5e-07 32.0 0.9 1.8e-06 28.4 0.8 2.6 1 1 0 1 1 1 1 AAA domain SKI PF01202.22 gi|212223710|ref|YP_002306946.1| - 1.6e-07 31.6 0.0 0.0022 18.2 0.0 2.1 2 0 0 2 2 2 2 Shikimate kinase Cytidylate_kin PF02224.18 gi|212223710|ref|YP_002306946.1| - 3.4e-07 30.2 1.2 0.0083 15.9 0.0 2.4 1 1 0 2 2 2 2 Cytidylate kinase dNK PF01712.19 gi|212223710|ref|YP_002306946.1| - 1.3e-06 28.4 0.1 0.003 17.5 0.0 2.2 2 0 0 2 2 2 2 Deoxynucleoside kinase Cytidylate_kin2 PF13189.6 gi|212223710|ref|YP_002306946.1| - 4.4e-06 27.0 2.3 0.00027 21.1 0.1 2.8 1 1 2 3 3 3 1 Cytidylate kinase-like family AAA_33 PF13671.6 gi|212223710|ref|YP_002306946.1| - 5.3e-06 26.7 0.3 0.0013 18.9 0.1 2.3 1 1 1 2 2 2 1 AAA domain Thymidylate_kin PF02223.17 gi|212223710|ref|YP_002306946.1| - 1.6e-05 24.7 0.1 0.086 12.5 0.0 2.3 2 0 0 2 2 2 2 Thymidylate kinase AAA_28 PF13521.6 gi|212223710|ref|YP_002306946.1| - 4e-05 23.9 0.1 0.00017 21.9 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_30 PF13604.6 gi|212223710|ref|YP_002306946.1| - 9.2e-05 22.2 0.0 0.00013 21.7 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA PF00004.29 gi|212223710|ref|YP_002306946.1| - 0.00026 21.4 0.4 0.0015 19.0 0.4 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|212223710|ref|YP_002306946.1| - 0.00033 20.9 0.1 0.054 13.8 0.0 2.3 2 0 0 2 2 2 1 AAA domain Zeta_toxin PF06414.12 gi|212223710|ref|YP_002306946.1| - 0.00043 19.6 0.4 0.0051 16.1 0.4 2.5 1 1 0 1 1 1 1 Zeta toxin AAA_5 PF07728.14 gi|212223710|ref|YP_002306946.1| - 0.0018 18.3 1.3 0.1 12.6 0.1 2.2 1 1 1 2 2 2 1 AAA domain (dynein-related subfamily) AAA_16 PF13191.6 gi|212223710|ref|YP_002306946.1| - 0.0028 18.1 0.7 0.016 15.6 0.7 1.9 1 1 0 1 1 1 1 AAA ATPase domain PRK PF00485.18 gi|212223710|ref|YP_002306946.1| - 0.003 17.3 0.0 0.006 16.3 0.0 1.6 1 0 0 1 1 1 1 Phosphoribulokinase / Uridine kinase family UPF0180 PF03698.13 gi|212223710|ref|YP_002306946.1| - 0.0082 16.3 1.0 0.085 13.1 0.3 2.6 2 1 0 2 2 2 1 Uncharacterised protein family (UPF0180) ADK PF00406.22 gi|212223710|ref|YP_002306946.1| - 0.023 14.8 0.3 0.25 11.4 0.3 2.3 1 1 0 1 1 1 0 Adenylate kinase Rad17 PF03215.15 gi|212223710|ref|YP_002306946.1| - 0.036 14.0 0.0 0.066 13.1 0.0 1.5 2 0 0 2 2 2 0 Rad17 P-loop domain TsaE PF02367.17 gi|212223710|ref|YP_002306946.1| - 0.044 13.8 0.4 0.3 11.1 0.0 2.4 3 1 0 3 3 3 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE CoaE PF01121.20 gi|212223710|ref|YP_002306946.1| - 0.057 13.1 0.7 0.24 11.1 0.0 2.2 1 1 1 3 3 3 0 Dephospho-CoA kinase AAA_19 PF13245.6 gi|212223710|ref|YP_002306946.1| - 0.084 13.2 0.0 2.4 8.5 0.0 2.2 2 0 0 2 2 2 0 AAA domain RuvB_N PF05496.12 gi|212223710|ref|YP_002306946.1| - 0.097 12.4 0.1 0.22 11.2 0.0 1.7 2 0 0 2 2 2 0 Holliday junction DNA helicase RuvB P-loop domain P-mevalo_kinase PF04275.14 gi|212223710|ref|YP_002306946.1| - 0.12 12.3 0.0 0.47 10.4 0.0 1.9 2 0 0 2 2 2 0 Phosphomevalonate kinase CPT PF07931.12 gi|212223710|ref|YP_002306946.1| - 0.13 12.1 0.2 4.6 7.1 0.2 2.4 1 1 0 1 1 1 0 Chloramphenicol phosphotransferase-like protein PrcB_C PF14343.6 gi|212223710|ref|YP_002306946.1| - 0.15 12.3 0.3 2 8.6 0.2 2.2 2 0 0 2 2 2 0 PrcB C-terminal ATPase PF06745.13 gi|212223710|ref|YP_002306946.1| - 0.25 10.6 3.3 3.1 7.1 0.4 2.2 2 1 0 2 2 2 0 KaiC Peptidase_M48 PF01435.18 gi|212223711|ref|YP_002306947.1| - 3.2e-30 105.4 0.0 4.5e-30 104.9 0.0 1.2 1 0 0 1 1 1 1 Peptidase family M48 Peptidase_M56 PF05569.11 gi|212223711|ref|YP_002306947.1| - 3.9e-05 23.0 0.3 6.2e-05 22.3 0.3 1.3 1 1 0 1 1 1 1 BlaR1 peptidase M56 SNARE_assoc PF09335.11 gi|212223711|ref|YP_002306947.1| - 0.14 12.6 5.3 0.15 12.5 3.2 2.2 1 1 1 2 2 2 0 SNARE associated Golgi protein Pam17 PF08566.10 gi|212223711|ref|YP_002306947.1| - 0.41 10.5 3.7 1.4 8.8 3.0 1.9 2 0 0 2 2 2 0 Mitochondrial import protein Pam17 DUF2613 PF11021.8 gi|212223711|ref|YP_002306947.1| - 0.44 10.7 0.1 0.44 10.7 0.1 2.5 3 0 0 3 3 3 0 Protein of unknown function (DUF2613) DUF2244 PF10003.9 gi|212223711|ref|YP_002306947.1| - 1.9 8.1 6.5 3.6 7.3 6.5 1.4 1 0 0 1 1 1 0 Integral membrane protein (DUF2244) Tmemb_14 PF03647.13 gi|212223711|ref|YP_002306947.1| - 3.6 8.4 8.1 8.8 7.1 2.0 2.6 2 1 0 2 2 2 0 Transmembrane proteins 14C Metallophos PF00149.28 gi|212223712|ref|YP_002306948.1| - 3.6e-21 76.6 0.2 5.9e-21 75.9 0.2 1.3 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|212223712|ref|YP_002306948.1| - 1.1e-20 74.4 0.0 1.8e-20 73.8 0.0 1.3 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos_3 PF14582.6 gi|212223712|ref|YP_002306948.1| - 7.7e-17 61.5 0.2 2.4e-12 46.7 0.1 2.2 2 0 0 2 2 2 2 Metallophosphoesterase, calcineurin superfamily Aminotran_1_2 PF00155.21 gi|212223713|ref|YP_002306949.1| - 4.4e-74 249.8 0.0 5e-74 249.6 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.17 gi|212223713|ref|YP_002306949.1| - 1.5e-06 27.8 0.1 2.5e-06 27.1 0.1 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.19 gi|212223713|ref|YP_002306949.1| - 1.6e-05 24.0 0.0 0.00018 20.6 0.0 2.0 2 0 0 2 2 2 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.20 gi|212223713|ref|YP_002306949.1| - 0.004 15.8 0.0 0.0066 15.0 0.0 1.3 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Rsbr_N PF08678.10 gi|212223713|ref|YP_002306949.1| - 0.082 13.0 0.1 1.1 9.3 0.1 2.3 2 0 0 2 2 2 0 Rsbr N terminal Beta_elim_lyase PF01212.21 gi|212223713|ref|YP_002306949.1| - 0.098 11.9 0.0 0.16 11.3 0.0 1.3 1 0 0 1 1 1 0 Beta-eliminating lyase Carbam_trans_C PF16861.5 gi|212223714|ref|YP_002306950.1| - 2.9e-63 212.5 0.0 4e-63 212.0 0.0 1.2 1 0 0 1 1 1 1 Carbamoyltransferase C-terminus Carbam_trans_N PF02543.15 gi|212223714|ref|YP_002306950.1| - 5.7e-51 174.2 0.1 4.5e-38 131.8 0.0 2.1 1 1 1 2 2 2 2 Carbamoyltransferase N-terminus Peptidase_M22 PF00814.25 gi|212223714|ref|YP_002306950.1| - 0.00015 21.6 0.0 0.001 18.9 0.0 2.0 2 0 0 2 2 2 1 Glycoprotease family DUF2048 PF09752.9 gi|212223715|ref|YP_002306951.1| - 0.011 14.8 0.0 0.012 14.7 0.0 1.0 1 0 0 1 1 1 0 Abhydrolase domain containing 18 MIT PF04212.18 gi|212223715|ref|YP_002306951.1| - 0.079 13.0 1.3 1.2 9.3 0.1 2.3 2 0 0 2 2 2 0 MIT (microtubule interacting and transport) domain tRNA-synt_2b PF00587.25 gi|212223716|ref|YP_002306952.1| - 4.7e-23 82.1 0.0 9e-23 81.2 0.0 1.5 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.20 gi|212223716|ref|YP_002306952.1| - 4.9e-22 77.9 0.3 9.6e-22 77.0 0.3 1.5 1 0 0 1 1 1 1 Anticodon binding domain ProRS-C_1 PF09180.11 gi|212223716|ref|YP_002306952.1| - 5.3e-18 65.0 1.0 2.5e-16 59.6 1.5 2.4 2 0 0 2 2 2 1 Prolyl-tRNA synthetase, C-terminal TIR_2 PF13676.6 gi|212223716|ref|YP_002306952.1| - 0.0015 19.1 0.0 0.0044 17.6 0.0 1.8 1 0 0 1 1 1 1 TIR domain ProRS-C_2 PF09181.10 gi|212223716|ref|YP_002306952.1| - 0.01 16.0 0.1 0.033 14.3 0.1 1.9 1 0 0 1 1 1 0 Prolyl-tRNA synthetase, C-terminal Pup PF05639.11 gi|212223716|ref|YP_002306952.1| - 0.057 14.3 0.1 0.14 13.0 0.1 1.6 1 0 0 1 1 1 0 Pup-like protein Rad50_zn_hook PF04423.14 gi|212223716|ref|YP_002306952.1| - 0.11 12.4 0.3 0.51 10.2 0.3 2.2 1 0 0 1 1 1 0 Rad50 zinc hook motif 2-Hacid_dh_C PF02826.19 gi|212223717|ref|YP_002306953.1| - 4.2e-58 195.6 0.1 1.8e-57 193.6 0.0 2.0 3 0 0 3 3 3 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.30 gi|212223717|ref|YP_002306953.1| - 1.4e-33 115.4 0.0 1.8e-33 115.1 0.0 1.1 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NAD_binding_2 PF03446.15 gi|212223717|ref|YP_002306953.1| - 1.1e-09 38.7 0.1 1.7e-09 38.0 0.1 1.3 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.17 gi|212223717|ref|YP_002306953.1| - 6.3e-09 36.3 0.0 1.7e-08 34.9 0.0 1.8 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent IlvN PF07991.12 gi|212223717|ref|YP_002306953.1| - 4.3e-07 29.6 0.3 1.3e-06 28.1 0.0 1.9 3 0 0 3 3 3 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain NAD_Gly3P_dh_N PF01210.23 gi|212223717|ref|YP_002306953.1| - 7.6e-06 26.0 0.6 0.00031 20.7 0.6 2.3 1 1 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Shikimate_DH PF01488.20 gi|212223717|ref|YP_002306953.1| - 0.00012 22.1 0.1 0.002 18.2 0.0 2.2 2 0 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase AdoHcyase_NAD PF00670.21 gi|212223717|ref|YP_002306953.1| - 0.00042 20.4 0.1 0.001 19.1 0.1 1.6 1 1 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain ApbA PF02558.16 gi|212223717|ref|YP_002306953.1| - 0.0032 17.1 0.0 0.0068 16.1 0.0 1.6 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA DpaA_N PF16924.5 gi|212223717|ref|YP_002306953.1| - 0.01 15.9 0.0 0.023 14.8 0.0 1.6 1 0 0 1 1 1 0 Dipicolinate synthase subunit A N-terminal domain NAD_binding_7 PF13241.6 gi|212223717|ref|YP_002306953.1| - 0.01 16.2 0.1 0.024 15.0 0.1 1.5 1 0 0 1 1 1 0 Putative NAD(P)-binding Sacchrp_dh_NADP PF03435.18 gi|212223717|ref|YP_002306953.1| - 0.032 14.5 0.9 0.14 12.4 0.2 2.4 2 1 0 2 2 2 0 Saccharopine dehydrogenase NADP binding domain Rossmann-like PF10727.9 gi|212223717|ref|YP_002306953.1| - 0.04 13.8 0.0 0.11 12.3 0.0 1.7 1 0 0 1 1 1 0 Rossmann-like domain GFO_IDH_MocA PF01408.22 gi|212223717|ref|YP_002306953.1| - 0.041 14.7 0.0 1.4 9.7 0.0 2.4 2 0 0 2 2 2 0 Oxidoreductase family, NAD-binding Rossmann fold 3HCDH_N PF02737.18 gi|212223717|ref|YP_002306953.1| - 0.06 13.2 0.1 0.11 12.4 0.1 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain XdhC_C PF13478.6 gi|212223717|ref|YP_002306953.1| - 0.088 13.3 0.0 0.16 12.4 0.0 1.4 1 0 0 1 1 1 0 XdhC Rossmann domain ThiF PF00899.21 gi|212223717|ref|YP_002306953.1| - 0.12 11.7 0.1 6.7 6.0 0.1 2.2 2 0 0 2 2 2 0 ThiF family Peptidase_M42 PF05343.14 gi|212223718|ref|YP_002306954.1| - 9.2e-87 290.7 0.0 1.1e-86 290.5 0.0 1.0 1 0 0 1 1 1 1 M42 glutamyl aminopeptidase Peptidase_M20 PF01546.28 gi|212223718|ref|YP_002306954.1| - 4e-11 43.0 0.0 1.4e-10 41.2 0.0 1.9 1 1 0 1 1 1 1 Peptidase family M20/M25/M40 Peptidase_M28 PF04389.17 gi|212223718|ref|YP_002306954.1| - 0.00011 22.0 0.0 0.00078 19.2 0.0 2.1 2 0 0 2 2 2 1 Peptidase family M28 TauE PF01925.19 gi|212223719|ref|YP_002306955.1| - 1.6e-58 198.1 32.4 1.9e-58 197.9 32.4 1.0 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE S_4TM PF18159.1 gi|212223719|ref|YP_002306955.1| - 8.9 5.5 6.0 17 4.6 1.1 2.2 2 0 0 2 2 2 0 SMODS-associating 4TM effector domain DUF4229 PF14012.6 gi|212223720|ref|YP_002306956.1| - 5.9 7.1 10.8 1.4 9.1 2.1 3.1 3 0 0 3 3 3 0 Protein of unknown function (DUF4229) TauE PF01925.19 gi|212223721|ref|YP_002306957.1| - 5.6e-56 189.8 33.4 6.4e-56 189.6 33.4 1.0 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE DUF2913 PF11140.8 gi|212223722|ref|YP_002306958.1| - 0.038 13.7 0.1 0.038 13.7 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2913) Amidohydro_2 PF04909.14 gi|212223722|ref|YP_002306958.1| - 0.12 12.1 0.0 0.12 12.1 0.0 1.0 1 0 0 1 1 1 0 Amidohydrolase NPV_P10 PF05531.12 gi|212223723|ref|YP_002306959.1| - 0.0058 17.1 5.2 0.66 10.5 0.0 4.0 3 1 1 4 4 4 1 Nucleopolyhedrovirus P10 protein DUF4019 PF13211.6 gi|212223723|ref|YP_002306959.1| - 0.061 13.7 0.2 0.22 12.0 0.2 2.0 1 0 0 1 1 1 0 Protein of unknown function (DUF4019) DUF1870 PF08965.10 gi|212223723|ref|YP_002306959.1| - 0.95 9.5 5.1 1.2 9.2 0.1 3.2 2 2 1 4 4 4 0 Domain of unknown function (DUF1870) PPR PF01535.20 gi|212223723|ref|YP_002306959.1| - 4.7 7.7 5.0 3.1 8.3 0.0 3.2 3 0 0 3 3 3 0 PPR repeat YabA PF06156.13 gi|212223723|ref|YP_002306959.1| - 5.6 7.7 18.5 4.1 8.1 0.8 4.2 3 1 2 5 5 5 0 Initiation control protein YabA TrmB PF01978.19 gi|212223724|ref|YP_002306960.1| - 8.3e-09 35.2 0.0 1.8e-08 34.1 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 gi|212223724|ref|YP_002306960.1| - 2.3e-08 33.4 0.0 4.4e-08 32.5 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|212223724|ref|YP_002306960.1| - 4e-05 23.4 0.0 7.4e-05 22.6 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.10 gi|212223724|ref|YP_002306960.1| - 0.00022 20.9 0.0 0.00056 19.7 0.0 1.6 2 0 0 2 2 2 1 IclR helix-turn-helix domain Rrf2 PF02082.20 gi|212223724|ref|YP_002306960.1| - 0.0011 19.3 0.0 0.0021 18.3 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulator Fe_dep_repress PF01325.19 gi|212223724|ref|YP_002306960.1| - 0.0034 17.6 0.3 0.027 14.7 0.0 2.3 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain Gram_pos_anchor PF00746.21 gi|212223724|ref|YP_002306960.1| - 0.0078 16.1 0.1 0.024 14.6 0.1 1.8 1 0 0 1 1 1 1 LPXTG cell wall anchor motif MarR PF01047.22 gi|212223724|ref|YP_002306960.1| - 0.0079 16.1 0.0 0.014 15.3 0.0 1.4 1 0 0 1 1 1 1 MarR family EF-hand_8 PF13833.6 gi|212223724|ref|YP_002306960.1| - 0.026 14.3 0.0 0.056 13.3 0.0 1.5 1 0 0 1 1 1 0 EF-hand domain pair HTH_AsnC-type PF13404.6 gi|212223724|ref|YP_002306960.1| - 0.028 14.2 0.0 0.042 13.7 0.0 1.3 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain HTH_27 PF13463.6 gi|212223724|ref|YP_002306960.1| - 0.063 13.8 0.0 0.13 12.8 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain LexA_DNA_bind PF01726.16 gi|212223724|ref|YP_002306960.1| - 0.1 12.4 0.0 0.2 11.4 0.0 1.4 1 0 0 1 1 1 0 LexA DNA binding domain HTH_Tnp_ISL3 PF13542.6 gi|212223724|ref|YP_002306960.1| - 0.11 11.9 0.0 0.19 11.2 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 HTH_23 PF13384.6 gi|212223724|ref|YP_002306960.1| - 0.13 12.1 0.0 0.23 11.3 0.0 1.4 1 0 0 1 1 1 0 Homeodomain-like domain Crp PF00325.20 gi|212223724|ref|YP_002306960.1| - 0.16 11.6 0.0 0.37 10.5 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory proteins, crp family HTH_Crp_2 PF13545.6 gi|212223724|ref|YP_002306960.1| - 0.17 11.9 0.0 0.39 10.7 0.0 1.7 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain EzrA PF06160.12 gi|212223725|ref|YP_002306961.1| - 2.5e-06 26.0 17.6 2.5e-06 26.0 17.6 3.1 1 1 1 3 3 3 2 Septation ring formation regulator, EzrA DUF16 PF01519.16 gi|212223725|ref|YP_002306961.1| - 0.0017 18.8 1.8 0.0017 18.8 1.8 3.2 3 0 0 3 3 3 1 Protein of unknown function DUF16 PspA_IM30 PF04012.12 gi|212223725|ref|YP_002306961.1| - 0.0051 16.4 6.7 0.0051 16.4 6.7 2.3 1 1 0 2 2 2 1 PspA/IM30 family NPV_P10 PF05531.12 gi|212223725|ref|YP_002306961.1| - 0.24 11.9 3.2 1.4 9.5 0.6 2.9 2 0 0 2 2 2 0 Nucleopolyhedrovirus P10 protein BUD22 PF09073.10 gi|212223725|ref|YP_002306961.1| - 0.7 9.2 23.7 0.99 8.7 23.7 1.3 1 0 0 1 1 1 0 BUD22 Fib_alpha PF08702.10 gi|212223725|ref|YP_002306961.1| - 1.6 8.9 16.8 0.039 14.1 2.6 3.2 1 1 1 3 3 3 0 Fibrinogen alpha/beta chain family Noelin-1 PF12308.8 gi|212223725|ref|YP_002306961.1| - 2.5 8.1 6.2 5.5 7.0 0.8 3.3 1 1 2 3 3 3 0 Neurogenesis glycoprotein TPR_2 PF07719.17 gi|212223725|ref|YP_002306961.1| - 5.1 7.4 10.7 39 4.7 1.9 4.7 3 1 1 4 4 4 0 Tetratricopeptide repeat Syntaxin_2 PF14523.6 gi|212223725|ref|YP_002306961.1| - 5.5 7.4 8.1 11 6.5 0.8 3.0 2 1 1 3 3 3 0 Syntaxin-like protein Laminin_II PF06009.12 gi|212223725|ref|YP_002306961.1| - 6.4 6.8 13.6 0.67 10.0 1.3 3.1 3 0 0 3 3 3 0 Laminin Domain II DUF2203 PF09969.9 gi|212223725|ref|YP_002306961.1| - 6.6 7.5 18.1 0.91 10.3 2.6 3.4 2 1 2 4 4 4 0 Uncharacterized conserved protein (DUF2203) CENP-H PF05837.12 gi|212223725|ref|YP_002306961.1| - 7.1 7.1 20.4 2.6 8.5 3.8 3.2 2 1 1 3 3 3 0 Centromere protein H (CENP-H) XhlA PF10779.9 gi|212223725|ref|YP_002306961.1| - 7.8 6.8 10.1 2.6 8.3 1.8 3.2 2 0 0 2 2 2 0 Haemolysin XhlA DUF713 PF05218.14 gi|212223725|ref|YP_002306961.1| - 9 6.0 19.0 3.6 7.3 3.7 3.4 2 1 1 3 3 3 0 Protein of unknown function (DUF713) TrmB PF01978.19 gi|212223726|ref|YP_002306962.1| - 7.1e-09 35.4 0.0 1.6e-08 34.3 0.0 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|212223726|ref|YP_002306962.1| - 6.8e-06 25.9 0.0 1.3e-05 25.0 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|212223726|ref|YP_002306962.1| - 5e-05 22.8 0.0 9.7e-05 21.9 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Fe_dep_repress PF01325.19 gi|212223726|ref|YP_002306962.1| - 5.5e-05 23.3 0.0 0.00014 22.0 0.0 1.6 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_IclR PF09339.10 gi|212223726|ref|YP_002306962.1| - 9.8e-05 22.1 0.0 0.00023 20.9 0.0 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR PF01047.22 gi|212223726|ref|YP_002306962.1| - 0.0036 17.2 0.0 0.0071 16.3 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_23 PF13384.6 gi|212223726|ref|YP_002306962.1| - 0.017 14.9 0.1 0.039 13.8 0.1 1.6 1 0 0 1 1 1 0 Homeodomain-like domain Rrf2 PF02082.20 gi|212223726|ref|YP_002306962.1| - 0.022 15.1 0.0 0.065 13.6 0.0 1.7 1 0 0 1 1 1 0 Transcriptional regulator HTH_27 PF13463.6 gi|212223726|ref|YP_002306962.1| - 0.026 15.0 0.1 0.11 13.0 0.0 2.1 1 1 1 2 2 2 0 Winged helix DNA-binding domain Penicillinase_R PF03965.16 gi|212223726|ref|YP_002306962.1| - 0.062 13.6 0.7 0.41 11.0 0.1 2.2 2 0 0 2 2 2 0 Penicillinase repressor tRNA-synt_1g PF09334.11 gi|212223727|ref|YP_002306963.1| - 6.8e-161 535.4 0.1 8.9e-161 535.0 0.1 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (M) tRNA_bind PF01588.20 gi|212223727|ref|YP_002306963.1| - 1e-31 108.9 0.0 1.7e-31 108.2 0.0 1.4 1 0 0 1 1 1 1 Putative tRNA binding domain tRNA-synt_1 PF00133.22 gi|212223727|ref|YP_002306963.1| - 1e-16 60.3 0.7 7.9e-08 31.0 0.0 3.4 3 1 0 3 3 3 2 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.13 gi|212223727|ref|YP_002306963.1| - 3e-13 50.0 0.1 6.8e-13 48.8 0.1 1.6 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1e PF01406.19 gi|212223727|ref|YP_002306963.1| - 5.1e-05 22.8 0.0 0.26 10.6 0.0 2.3 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain DZR PF12773.7 gi|212223727|ref|YP_002306963.1| - 0.0076 16.3 4.2 0.013 15.5 4.2 1.4 1 0 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.6 gi|212223727|ref|YP_002306963.1| - 0.019 14.4 9.5 2.6 7.6 4.5 3.1 2 1 1 3 3 3 0 zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|212223727|ref|YP_002306963.1| - 1.3 8.8 11.1 0.41 10.4 4.5 2.9 1 1 0 2 2 2 0 zinc-ribbon domain zf-Mss51 PF13824.6 gi|212223727|ref|YP_002306963.1| - 6 7.0 5.9 2.4 8.3 1.3 2.4 2 0 0 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 Cys_rich_CPXG PF14255.6 gi|212223727|ref|YP_002306963.1| - 8.9 6.3 8.9 85 3.2 0.0 3.3 2 1 0 2 2 2 0 Cysteine-rich CPXCG PTPS PF01242.19 gi|212223728|ref|YP_002306964.1| - 4.8e-27 94.4 0.0 5.8e-27 94.1 0.0 1.0 1 0 0 1 1 1 1 6-pyruvoyl tetrahydropterin synthase DUF192 PF02643.15 gi|212223729|ref|YP_002306965.1| - 7.4e-18 64.5 0.0 9.5e-18 64.2 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized ACR, COG1430 POR PF01558.18 gi|212223730|ref|YP_002306966.1| - 2e-34 119.2 0.0 2.4e-34 118.9 0.0 1.0 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase TPP_enzyme_C PF02775.21 gi|212223731|ref|YP_002306967.1| - 4.3e-35 120.8 0.2 5.7e-35 120.4 0.2 1.2 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain POR_N PF01855.19 gi|212223732|ref|YP_002306968.1| - 8.6e-81 271.1 1.0 1.1e-80 270.7 1.0 1.1 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg PFOR_II PF17147.4 gi|212223732|ref|YP_002306968.1| - 6.3e-21 74.6 0.1 1.5e-20 73.4 0.1 1.6 1 0 0 1 1 1 1 Pyruvate:ferredoxin oxidoreductase core domain II Transketolase_C PF02780.20 gi|212223732|ref|YP_002306968.1| - 4.9e-11 42.6 0.0 1e-10 41.5 0.0 1.5 1 0 0 1 1 1 1 Transketolase, C-terminal domain TPP_enzyme_N PF02776.18 gi|212223732|ref|YP_002306968.1| - 1.2e-05 24.9 0.7 1.8e-05 24.4 0.7 1.2 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain POR PF01558.18 gi|212223733|ref|YP_002306969.1| - 1.8e-38 132.4 1.2 2.9e-38 131.7 1.2 1.3 1 1 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase TPP_enzyme_C PF02775.21 gi|212223734|ref|YP_002306970.1| - 8e-40 136.1 0.2 1.2e-39 135.5 0.2 1.3 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain POR_N PF01855.19 gi|212223735|ref|YP_002306971.1| - 3.2e-76 256.1 0.0 4.1e-76 255.8 0.0 1.1 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg PFOR_II PF17147.4 gi|212223735|ref|YP_002306971.1| - 1.5e-18 66.9 0.1 2.5e-18 66.3 0.1 1.4 1 0 0 1 1 1 1 Pyruvate:ferredoxin oxidoreductase core domain II Transketolase_C PF02780.20 gi|212223735|ref|YP_002306971.1| - 7e-05 22.7 0.0 0.00017 21.5 0.0 1.6 1 0 0 1 1 1 1 Transketolase, C-terminal domain TPP_enzyme_N PF02776.18 gi|212223735|ref|YP_002306971.1| - 0.02 14.5 0.1 0.034 13.8 0.1 1.4 1 0 0 1 1 1 0 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Fer4 PF00037.27 gi|212223736|ref|YP_002306972.1| - 9.7e-12 44.2 12.5 2.4e-06 27.1 2.6 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|212223736|ref|YP_002306972.1| - 2.6e-11 43.9 7.4 3.4e-11 43.5 7.4 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|212223736|ref|YP_002306972.1| - 8e-09 35.5 17.8 3.7e-06 27.0 9.4 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|212223736|ref|YP_002306972.1| - 6e-08 32.7 7.0 0.00098 19.2 1.0 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|212223736|ref|YP_002306972.1| - 3.5e-06 27.8 7.0 0.0023 18.8 0.2 2.2 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_13 PF13370.6 gi|212223736|ref|YP_002306972.1| - 4.8e-06 27.0 5.5 0.0067 16.9 0.2 2.2 2 0 0 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_8 PF13183.6 gi|212223736|ref|YP_002306972.1| - 1e-05 25.9 4.1 0.014 15.8 0.1 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|212223736|ref|YP_002306972.1| - 1.4e-05 24.9 11.0 0.02 14.9 2.0 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|212223736|ref|YP_002306972.1| - 1.6e-05 24.7 11.7 0.0022 18.0 1.8 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|212223736|ref|YP_002306972.1| - 2e-05 24.6 10.1 7.8e-05 22.7 10.4 1.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain ETF_QO PF05187.13 gi|212223736|ref|YP_002306972.1| - 2.4e-05 24.4 0.6 2.8e-05 24.2 0.6 1.2 1 0 0 1 1 1 1 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S Fer4_17 PF13534.6 gi|212223736|ref|YP_002306972.1| - 0.00019 21.9 12.1 0.0059 17.1 12.1 2.1 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|212223736|ref|YP_002306972.1| - 0.0002 22.2 4.7 0.021 15.7 0.5 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|212223736|ref|YP_002306972.1| - 0.00089 19.6 11.0 0.051 14.1 2.3 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_15 PF13459.6 gi|212223736|ref|YP_002306972.1| - 0.0038 17.9 6.9 0.013 16.2 0.5 2.3 2 0 0 2 2 2 1 4Fe-4S single cluster domain DUF3343 PF11823.8 gi|212223736|ref|YP_002306972.1| - 0.039 13.4 0.1 0.067 12.7 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3343) Fer4_3 PF12798.7 gi|212223736|ref|YP_002306972.1| - 0.04 14.9 16.2 0.23 12.5 5.3 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_18 PF13746.6 gi|212223736|ref|YP_002306972.1| - 0.61 10.3 9.9 2.3 8.5 1.5 2.1 1 1 1 2 2 2 0 4Fe-4S dicluster domain Radical_SAM PF04055.21 gi|212223737|ref|YP_002306973.1| - 1.3e-08 35.4 0.1 1.9e-08 34.8 0.1 1.3 1 0 0 1 1 1 1 Radical SAM superfamily Radical_SAM_C PF16199.5 gi|212223737|ref|YP_002306973.1| - 0.14 12.2 0.0 0.37 10.8 0.0 1.7 2 0 0 2 2 2 0 Radical_SAM C-terminal domain SurE PF01975.17 gi|212223738|ref|YP_002306974.1| - 3.5e-54 183.5 0.0 4.2e-54 183.3 0.0 1.1 1 0 0 1 1 1 1 Survival protein SurE TcpE PF12648.7 gi|212223739|ref|YP_002306975.1| - 0.023 15.2 2.0 0.023 15.2 2.0 2.1 2 1 0 2 2 2 0 TcpE family SID-1_RNA_chan PF13965.6 gi|212223739|ref|YP_002306975.1| - 0.088 11.2 1.4 0.11 10.9 1.4 1.2 1 0 0 1 1 1 0 dsRNA-gated channel SID-1 DUF2070 PF09843.9 gi|212223739|ref|YP_002306975.1| - 3 6.0 11.7 3.2 5.9 11.7 1.2 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) SRP54 PF00448.22 gi|212223740|ref|YP_002306976.1| - 1.3e-79 266.4 0.2 1.7e-79 266.0 0.2 1.2 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP54_N PF02881.19 gi|212223740|ref|YP_002306976.1| - 4.4e-14 52.4 6.8 4.4e-14 52.4 6.8 2.0 2 0 0 2 2 2 1 SRP54-type protein, helical bundle domain AAA_30 PF13604.6 gi|212223740|ref|YP_002306976.1| - 1.1e-07 31.8 1.1 1.6e-07 31.2 1.1 1.2 1 0 0 1 1 1 1 AAA domain MeaB PF03308.16 gi|212223740|ref|YP_002306976.1| - 2e-06 27.0 0.2 5.8e-06 25.5 0.2 1.8 1 1 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB MobB PF03205.14 gi|212223740|ref|YP_002306976.1| - 9e-06 25.6 2.1 0.00048 20.0 0.1 2.5 1 1 1 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_17 PF13207.6 gi|212223740|ref|YP_002306976.1| - 1.4e-05 25.6 1.6 1.8e-05 25.2 0.1 2.0 2 0 0 2 2 2 1 AAA domain Zeta_toxin PF06414.12 gi|212223740|ref|YP_002306976.1| - 2.1e-05 23.9 0.0 7.2e-05 22.2 0.0 1.8 1 1 1 2 2 2 1 Zeta toxin cobW PF02492.19 gi|212223740|ref|YP_002306976.1| - 2.3e-05 24.1 0.2 4.3e-05 23.2 0.2 1.4 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain CbiA PF01656.23 gi|212223740|ref|YP_002306976.1| - 2.3e-05 24.4 2.6 8.8e-05 22.6 0.4 2.6 2 1 0 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain Thymidylate_kin PF02223.17 gi|212223740|ref|YP_002306976.1| - 7.6e-05 22.5 0.5 0.00049 19.8 0.1 2.4 2 1 0 2 2 2 1 Thymidylate kinase AAA_22 PF13401.6 gi|212223740|ref|YP_002306976.1| - 0.00015 22.0 0.0 0.001 19.3 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_33 PF13671.6 gi|212223740|ref|YP_002306976.1| - 0.00022 21.4 0.0 0.00046 20.4 0.0 1.6 1 0 0 1 1 1 1 AAA domain VirC1 PF07015.11 gi|212223740|ref|YP_002306976.1| - 0.00039 19.8 0.1 0.00091 18.6 0.0 1.7 2 0 0 2 2 2 1 VirC1 protein MMR_HSR1 PF01926.23 gi|212223740|ref|YP_002306976.1| - 0.00046 20.2 2.2 0.00063 19.8 0.4 2.2 2 1 0 2 2 2 1 50S ribosome-binding GTPase NTPase_1 PF03266.15 gi|212223740|ref|YP_002306976.1| - 0.0012 18.8 5.7 0.092 12.7 1.7 3.2 1 1 0 2 2 2 1 NTPase Peripla_BP_4 PF13407.6 gi|212223740|ref|YP_002306976.1| - 0.0012 18.5 5.4 0.33 10.5 0.1 3.0 1 1 1 3 3 3 2 Periplasmic binding protein domain APS_kinase PF01583.20 gi|212223740|ref|YP_002306976.1| - 0.0015 18.4 0.2 0.0079 16.1 0.0 2.2 2 1 1 3 3 3 1 Adenylylsulphate kinase KdpD PF02702.17 gi|212223740|ref|YP_002306976.1| - 0.0045 16.5 0.9 0.014 14.9 0.1 2.1 2 0 0 2 2 2 1 Osmosensitive K+ channel His kinase sensor domain KTI12 PF08433.10 gi|212223740|ref|YP_002306976.1| - 0.0087 15.5 0.0 0.018 14.5 0.0 1.5 1 0 0 1 1 1 1 Chromatin associated protein KTI12 AAA_16 PF13191.6 gi|212223740|ref|YP_002306976.1| - 0.01 16.2 0.0 0.023 15.1 0.0 1.7 1 1 0 1 1 1 0 AAA ATPase domain ABC_tran PF00005.27 gi|212223740|ref|YP_002306976.1| - 0.011 16.3 0.0 0.021 15.3 0.0 1.6 1 1 0 1 1 1 0 ABC transporter AAA_19 PF13245.6 gi|212223740|ref|YP_002306976.1| - 0.013 15.8 0.2 0.031 14.6 0.2 1.6 1 1 0 1 1 1 0 AAA domain DUF4417 PF14386.6 gi|212223740|ref|YP_002306976.1| - 0.016 14.8 0.0 0.065 12.8 0.0 1.9 1 1 1 2 2 2 0 Domain of unknown function (DUF4417) RsgA_GTPase PF03193.16 gi|212223740|ref|YP_002306976.1| - 0.022 14.7 0.5 1.8 8.5 0.3 3.4 1 1 2 4 4 4 0 RsgA GTPase AAA_28 PF13521.6 gi|212223740|ref|YP_002306976.1| - 0.026 14.8 0.1 0.052 13.8 0.1 1.5 1 1 0 1 1 1 0 AAA domain ATP_bind_1 PF03029.17 gi|212223740|ref|YP_002306976.1| - 0.028 14.2 0.1 0.1 12.3 0.1 2.0 1 1 0 1 1 1 0 Conserved hypothetical ATP binding protein DUF2855 PF11017.8 gi|212223740|ref|YP_002306976.1| - 0.042 13.6 0.1 0.064 13.0 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2855) KAP_NTPase PF07693.14 gi|212223740|ref|YP_002306976.1| - 0.042 13.1 0.4 0.08 12.2 0.2 1.6 1 1 0 1 1 1 0 KAP family P-loop domain TPP_enzyme_M PF00205.22 gi|212223740|ref|YP_002306976.1| - 0.042 13.6 0.5 4.8 6.9 0.1 2.4 2 0 0 2 2 2 0 Thiamine pyrophosphate enzyme, central domain 6PF2K PF01591.18 gi|212223740|ref|YP_002306976.1| - 0.043 13.1 0.0 0.091 12.1 0.0 1.5 1 0 0 1 1 1 0 6-phosphofructo-2-kinase NB-ARC PF00931.22 gi|212223740|ref|YP_002306976.1| - 0.044 13.0 0.0 0.17 11.0 0.0 1.9 2 0 0 2 2 2 0 NB-ARC domain CbiJ PF02571.14 gi|212223740|ref|YP_002306976.1| - 0.046 13.2 0.0 0.068 12.6 0.0 1.4 1 0 0 1 1 1 0 Precorrin-6x reductase CbiJ/CobK Glyco_trans_4_2 PF13477.6 gi|212223740|ref|YP_002306976.1| - 0.046 13.8 0.1 7.7 6.5 0.0 2.3 1 1 0 2 2 2 0 Glycosyl transferase 4-like TrwB_AAD_bind PF10412.9 gi|212223740|ref|YP_002306976.1| - 0.054 12.4 0.0 0.11 11.4 0.0 1.5 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain AAA_24 PF13479.6 gi|212223740|ref|YP_002306976.1| - 0.055 13.2 0.0 0.11 12.2 0.0 1.5 1 0 0 1 1 1 0 AAA domain Torsin PF06309.11 gi|212223740|ref|YP_002306976.1| - 0.07 13.2 0.1 0.45 10.6 0.1 2.2 1 1 0 1 1 1 0 Torsin AAA_31 PF13614.6 gi|212223740|ref|YP_002306976.1| - 0.072 13.0 0.2 0.072 13.0 0.2 2.2 2 2 0 2 2 2 0 AAA domain ResIII PF04851.15 gi|212223740|ref|YP_002306976.1| - 0.099 12.6 0.2 0.16 12.0 0.2 1.5 1 1 0 1 1 1 0 Type III restriction enzyme, res subunit Nif11 PF07862.11 gi|212223740|ref|YP_002306976.1| - 0.11 12.8 0.4 32 4.9 0.1 3.2 2 1 1 3 3 3 0 Nif11 domain Pox_A32 PF04665.12 gi|212223740|ref|YP_002306976.1| - 0.11 11.9 0.0 0.26 10.7 0.0 1.5 1 0 0 1 1 1 0 Poxvirus A32 protein ZnuA PF01297.17 gi|212223740|ref|YP_002306976.1| - 0.14 11.5 0.1 0.76 9.1 0.0 2.1 1 1 1 2 2 2 0 Zinc-uptake complex component A periplasmic Glyco_trans_4_4 PF13579.6 gi|212223740|ref|YP_002306976.1| - 0.16 12.4 0.0 0.27 11.7 0.0 1.4 1 0 0 1 1 1 0 Glycosyl transferase 4-like domain Sfi1 PF08457.10 gi|212223740|ref|YP_002306976.1| - 0.2 10.2 0.1 0.28 9.6 0.1 1.1 1 0 0 1 1 1 0 Sfi1 spindle body protein baeRF_family2 PF18844.1 gi|212223740|ref|YP_002306976.1| - 0.39 10.8 4.4 0.95 9.5 0.1 2.7 3 0 0 3 3 2 0 Bacterial archaeo-eukaryotic release factor family 2 Sipho_tail PF05709.11 gi|212223741|ref|YP_002306977.1| - 0.052 13.0 0.0 0.07 12.5 0.0 1.2 1 0 0 1 1 1 0 Phage tail protein SnoaL PF07366.12 gi|212223741|ref|YP_002306977.1| - 0.13 12.0 0.1 0.38 10.6 0.0 1.7 3 0 0 3 3 3 0 SnoaL-like polyketide cyclase Bmp PF02608.14 gi|212223742|ref|YP_002306978.1| - 6.4e-54 183.0 11.8 3.9e-53 180.4 11.8 1.9 1 1 0 1 1 1 1 ABC transporter substrate-binding protein PnrA-like Peripla_BP_1 PF00532.21 gi|212223742|ref|YP_002306978.1| - 0.06 12.8 0.0 0.12 11.8 0.0 1.5 1 0 0 1 1 1 0 Periplasmic binding proteins and sugar binding domain of LacI family ABC_tran PF00005.27 gi|212223743|ref|YP_002306979.1| - 3.5e-48 163.6 0.1 2.8e-29 102.4 0.0 2.2 2 0 0 2 2 2 2 ABC transporter AAA_21 PF13304.6 gi|212223743|ref|YP_002306979.1| - 1.2e-07 31.9 2.6 0.0023 17.8 0.2 2.4 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system Bac_DnaA PF00308.18 gi|212223743|ref|YP_002306979.1| - 5e-05 23.2 4.6 0.0039 17.0 0.3 3.7 4 0 0 4 4 4 1 Bacterial dnaA protein AAA_29 PF13555.6 gi|212223743|ref|YP_002306979.1| - 0.0042 16.8 1.0 0.1 12.4 0.3 2.4 2 0 0 2 2 2 1 P-loop containing region of AAA domain AAA_15 PF13175.6 gi|212223743|ref|YP_002306979.1| - 0.017 14.8 2.7 0.11 12.2 0.1 2.1 1 1 1 2 2 2 0 AAA ATPase domain AAA_23 PF13476.6 gi|212223743|ref|YP_002306979.1| - 0.029 14.9 0.1 0.029 14.9 0.1 2.0 2 0 0 2 2 2 0 AAA domain RsgA_GTPase PF03193.16 gi|212223743|ref|YP_002306979.1| - 0.029 14.3 4.5 0.39 10.6 0.2 3.8 4 0 0 4 4 4 0 RsgA GTPase AAA_24 PF13479.6 gi|212223743|ref|YP_002306979.1| - 0.06 13.1 0.6 5.1 6.8 0.1 2.6 2 0 0 2 2 2 0 AAA domain AAA_30 PF13604.6 gi|212223743|ref|YP_002306979.1| - 0.068 12.9 0.5 0.2 11.3 0.0 2.1 2 1 0 2 2 2 0 AAA domain DUF2813 PF11398.8 gi|212223743|ref|YP_002306979.1| - 0.097 11.9 0.1 2.5 7.2 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2813) AAA_13 PF13166.6 gi|212223743|ref|YP_002306979.1| - 0.12 11.0 0.0 0.17 10.5 0.0 1.1 1 0 0 1 1 1 0 AAA domain PduV-EutP PF10662.9 gi|212223743|ref|YP_002306979.1| - 0.14 11.9 1.0 4.9 6.9 0.0 3.2 3 0 0 3 3 3 0 Ethanolamine utilisation - propanediol utilisation SMC_N PF02463.19 gi|212223743|ref|YP_002306979.1| - 0.2 11.0 0.4 15 4.9 0.1 2.9 1 1 1 2 2 2 0 RecF/RecN/SMC N terminal domain BPD_transp_2 PF02653.16 gi|212223744|ref|YP_002306980.1| - 5.7e-41 140.4 33.7 5.7e-41 140.4 33.7 1.9 2 0 0 2 2 2 1 Branched-chain amino acid transport system / permease component Antimicrobial19 PF08225.11 gi|212223744|ref|YP_002306980.1| - 0.42 10.3 1.3 0.51 10.0 0.0 1.8 2 0 0 2 2 2 0 Pseudin antimicrobial peptide BPD_transp_2 PF02653.16 gi|212223745|ref|YP_002306981.1| - 1e-38 133.1 34.7 1.2e-38 132.8 34.7 1.0 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component Gly-zipper_Omp PF13488.6 gi|212223745|ref|YP_002306981.1| - 0.47 10.5 16.1 0.21 11.6 3.9 3.2 3 0 0 3 3 3 0 Glycine zipper TraT PF05818.12 gi|212223745|ref|YP_002306981.1| - 4.6 6.9 8.0 0.38 10.4 1.7 1.9 2 0 0 2 2 2 0 Enterobacterial TraT complement resistance protein ZnuA PF01297.17 gi|212223746|ref|YP_002306982.1| - 1.1e-31 110.2 1.6 1.3e-31 110.0 1.6 1.1 1 0 0 1 1 1 1 Zinc-uptake complex component A periplasmic S_layer_C PF05124.12 gi|212223747|ref|YP_002306983.1| - 5.6e-12 46.1 0.4 1.4e-10 41.5 0.4 2.4 1 1 0 1 1 1 1 S-layer like family, C-terminal region DUF4932 PF16286.5 gi|212223747|ref|YP_002306983.1| - 3.2e-09 36.5 0.9 3.2e-09 36.5 0.9 2.1 2 1 0 2 2 2 1 Domain of unknown function (DUF4932) Pribosyltran PF00156.27 gi|212223749|ref|YP_002306985.1| - 1.4e-20 73.4 0.0 2.3e-20 72.7 0.0 1.3 1 0 0 1 1 1 1 Phosphoribosyl transferase domain FlhC PF05280.11 gi|212223749|ref|YP_002306985.1| - 0.054 13.2 0.0 0.083 12.6 0.0 1.2 1 0 0 1 1 1 0 Flagellar transcriptional activator (FlhC) tRNA-synt_1e PF01406.19 gi|212223750|ref|YP_002306986.1| - 6.1e-138 459.2 0.1 1.2e-137 458.3 0.0 1.5 2 0 0 2 2 2 1 tRNA synthetases class I (C) catalytic domain tRNA-synt_1g PF09334.11 gi|212223750|ref|YP_002306986.1| - 3.4e-22 78.8 0.9 2.5e-11 42.9 0.2 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (M) DALR_2 PF09190.11 gi|212223750|ref|YP_002306986.1| - 6.6e-17 61.7 1.4 2.8e-16 59.8 0.3 2.4 2 0 0 2 2 2 1 DALR domain tRNA-synt_1f PF01921.18 gi|212223750|ref|YP_002306986.1| - 3.3e-09 36.1 1.1 1.9e-06 27.0 0.1 2.7 2 1 1 3 3 3 2 tRNA synthetases class I (K) tRNA-synt_1 PF00133.22 gi|212223750|ref|YP_002306986.1| - 4.9e-09 35.0 0.1 1.6e-06 26.7 0.0 2.8 3 0 0 3 3 3 2 tRNA synthetases class I (I, L, M and V) tRNA-synt_1c PF00749.21 gi|212223750|ref|YP_002306986.1| - 0.05 12.5 0.3 0.17 10.7 0.3 2.0 1 1 0 1 1 1 0 tRNA synthetases class I (E and Q), catalytic domain GAT PF03127.14 gi|212223750|ref|YP_002306986.1| - 0.073 13.4 0.3 0.27 11.5 0.3 2.0 1 0 0 1 1 1 0 GAT domain CdvA PF18822.1 gi|212223750|ref|YP_002306986.1| - 0.098 12.5 4.0 2.6 7.9 0.1 3.1 3 0 0 3 3 3 0 CdvA-like coiled-coil domain Rx_N PF18052.1 gi|212223750|ref|YP_002306986.1| - 0.83 10.0 2.9 0.74 10.1 0.4 2.2 2 0 0 2 2 2 0 Rx N-terminal domain FKBP_C PF00254.28 gi|212223751|ref|YP_002306987.1| - 2.5e-17 63.0 0.0 5.8e-17 61.8 0.0 1.7 1 1 0 1 1 1 1 FKBP-type peptidyl-prolyl cis-trans isomerase FKBP26_C PF18046.1 gi|212223751|ref|YP_002306987.1| - 0.0005 20.1 0.7 0.0012 18.8 0.7 1.7 1 0 0 1 1 1 1 FKBP26_C-terminal GAGA_bind PF06217.12 gi|212223751|ref|YP_002306987.1| - 0.77 10.0 12.7 1.1 9.5 12.7 1.3 1 0 0 1 1 1 0 GAGA binding protein-like family Hid1 PF12722.7 gi|212223751|ref|YP_002306987.1| - 4.5 5.3 15.3 4.9 5.1 15.3 1.0 1 0 0 1 1 1 0 High-temperature-induced dauer-formation protein CPBP PF02517.16 gi|212223752|ref|YP_002306988.1| - 1.1e-10 41.7 1.5 1.1e-10 41.7 1.5 2.1 2 1 0 2 2 2 1 CPBP intramembrane metalloprotease DUF3792 PF12670.7 gi|212223752|ref|YP_002306988.1| - 1 9.5 5.9 3.2 8.0 1.7 2.7 1 1 2 3 3 3 0 Protein of unknown function (DUF3792) DUF1624 PF07786.12 gi|212223753|ref|YP_002306989.1| - 2.2e-65 220.3 14.9 2.6e-65 220.1 14.9 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1624) OpgC_C PF10129.9 gi|212223753|ref|YP_002306989.1| - 1.7e-06 27.1 3.4 1.7e-06 27.1 3.4 2.3 1 1 1 2 2 2 2 OpgC protein ABC_tran PF00005.27 gi|212223754|ref|YP_002306990.1| - 7.1e-19 68.7 0.0 1.9e-18 67.3 0.0 1.8 1 1 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|212223754|ref|YP_002306990.1| - 2.6e-08 34.0 0.0 0.0052 16.6 0.0 2.5 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|212223754|ref|YP_002306990.1| - 3.6e-05 23.3 0.0 0.0005 19.6 0.0 1.8 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain Acetyltransf_1 PF00583.25 gi|212223754|ref|YP_002306990.1| - 0.00014 22.1 0.1 0.00055 20.2 0.1 2.1 1 1 0 1 1 1 1 Acetyltransferase (GNAT) family AAA_22 PF13401.6 gi|212223754|ref|YP_002306990.1| - 0.00024 21.4 0.0 0.00055 20.2 0.0 1.6 1 0 0 1 1 1 1 AAA domain Acetyltransf_7 PF13508.7 gi|212223754|ref|YP_002306990.1| - 0.0006 20.2 0.0 0.0015 19.0 0.0 1.7 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|212223754|ref|YP_002306990.1| - 0.0027 17.6 0.0 0.0075 16.2 0.0 1.7 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain AAA_16 PF13191.6 gi|212223754|ref|YP_002306990.1| - 0.0035 17.8 0.0 0.0074 16.7 0.0 1.6 1 0 0 1 1 1 1 AAA ATPase domain RsgA_GTPase PF03193.16 gi|212223754|ref|YP_002306990.1| - 0.0056 16.6 0.0 0.012 15.5 0.0 1.5 1 0 0 1 1 1 1 RsgA GTPase AAA_23 PF13476.6 gi|212223754|ref|YP_002306990.1| - 0.011 16.2 0.1 0.03 14.8 0.0 1.7 2 0 0 2 2 1 0 AAA domain AAA_25 PF13481.6 gi|212223754|ref|YP_002306990.1| - 0.011 15.3 0.3 0.04 13.5 0.3 1.9 1 1 0 1 1 1 0 AAA domain FR47 PF08445.10 gi|212223754|ref|YP_002306990.1| - 0.018 15.0 0.5 1.1 9.2 0.0 2.7 2 1 0 2 2 2 0 FR47-like protein GNAT_acetyltr_2 PF13718.6 gi|212223754|ref|YP_002306990.1| - 0.042 13.3 0.0 0.066 12.6 0.0 1.3 1 0 0 1 1 1 0 GNAT acetyltransferase 2 AAA_29 PF13555.6 gi|212223754|ref|YP_002306990.1| - 0.043 13.6 0.0 0.088 12.6 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain NACHT PF05729.12 gi|212223754|ref|YP_002306990.1| - 0.051 13.5 0.1 0.17 11.8 0.0 1.9 2 0 0 2 2 2 0 NACHT domain AAA_33 PF13671.6 gi|212223754|ref|YP_002306990.1| - 0.071 13.3 0.2 0.26 11.4 0.2 2.0 1 0 0 1 1 1 0 AAA domain AAA_28 PF13521.6 gi|212223754|ref|YP_002306990.1| - 0.075 13.3 0.1 0.27 11.4 0.0 2.0 2 0 0 2 2 2 0 AAA domain MMR_HSR1 PF01926.23 gi|212223754|ref|YP_002306990.1| - 0.083 13.0 0.0 0.2 11.7 0.0 1.6 1 0 0 1 1 1 0 50S ribosome-binding GTPase AAA_30 PF13604.6 gi|212223754|ref|YP_002306990.1| - 0.093 12.4 0.2 0.46 10.2 0.0 2.0 2 0 0 2 2 2 0 AAA domain DUF3584 PF12128.8 gi|212223754|ref|YP_002306990.1| - 0.22 9.0 0.0 0.32 8.4 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) DMRL_synthase PF00885.19 gi|212223755|ref|YP_002306991.1| - 3.7e-52 175.9 0.1 4.2e-52 175.7 0.1 1.0 1 0 0 1 1 1 1 6,7-dimethyl-8-ribityllumazine synthase GTP_cyclohydro2 PF00925.20 gi|212223756|ref|YP_002306992.1| - 3.2e-66 221.9 0.0 4.6e-66 221.4 0.0 1.2 1 0 0 1 1 1 1 GTP cyclohydrolase II DHBP_synthase PF00926.19 gi|212223756|ref|YP_002306992.1| - 8e-41 139.7 0.0 1.3e-40 139.0 0.0 1.3 1 0 0 1 1 1 1 3,4-dihydroxy-2-butanone 4-phosphate synthase Lum_binding PF00677.17 gi|212223757|ref|YP_002306993.1| - 7.6e-37 125.2 0.0 2.3e-22 78.8 0.0 2.1 2 0 0 2 2 2 2 Lumazine binding domain RibD_C PF01872.17 gi|212223758|ref|YP_002306994.1| - 1.5e-29 103.3 0.0 2e-29 102.8 0.0 1.2 1 0 0 1 1 1 1 RibD C-terminal domain dCMP_cyt_deam_1 PF00383.23 gi|212223758|ref|YP_002306994.1| - 6.4e-24 83.8 0.0 1.1e-23 83.0 0.0 1.4 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region MafB19-deam PF14437.6 gi|212223758|ref|YP_002306994.1| - 8.8e-16 57.9 0.0 1.4e-15 57.3 0.0 1.3 1 0 0 1 1 1 1 MafB19-like deaminase Inv-AAD PF18785.1 gi|212223758|ref|YP_002306994.1| - 1.2e-06 28.5 0.0 2.3e-06 27.5 0.0 1.5 1 1 0 1 1 1 1 Invertebrate-AID/APOBEC-deaminase APOBEC_N PF08210.11 gi|212223758|ref|YP_002306994.1| - 0.017 15.1 0.0 0.031 14.2 0.0 1.4 1 1 0 1 1 1 0 APOBEC-like N-terminal domain DUF4162 PF13732.6 gi|212223758|ref|YP_002306994.1| - 0.1 13.4 0.0 7 7.5 0.0 2.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4162) Peptidase_S9 PF00326.21 gi|212223759|ref|YP_002306995.1| - 7.2e-54 182.5 0.0 1e-53 182.0 0.0 1.2 1 0 0 1 1 1 1 Prolyl oligopeptidase family Peptidase_S9_N PF02897.15 gi|212223759|ref|YP_002306995.1| - 5.4e-21 74.9 0.0 1.6e-19 70.1 0.0 2.2 1 1 0 1 1 1 1 Prolyl oligopeptidase, N-terminal beta-propeller domain Peptidase_S15 PF02129.18 gi|212223759|ref|YP_002306995.1| - 0.0023 17.5 0.0 2 7.9 0.0 2.2 1 1 1 2 2 2 2 X-Pro dipeptidyl-peptidase (S15 family) Hydrolase_4 PF12146.8 gi|212223759|ref|YP_002306995.1| - 0.072 12.3 0.0 0.17 11.1 0.0 1.5 2 0 0 2 2 2 0 Serine aminopeptidase, S33 ATPase PF06745.13 gi|212223760|ref|YP_002306996.1| - 1.4e-51 175.1 0.4 1.6e-51 174.9 0.4 1.0 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.6 gi|212223760|ref|YP_002306996.1| - 1.8e-11 44.0 0.0 2.6e-11 43.5 0.0 1.2 1 0 0 1 1 1 1 AAA domain GvpD PF07088.11 gi|212223760|ref|YP_002306996.1| - 4.4e-09 35.5 0.3 0.00019 20.2 0.0 2.2 2 0 0 2 2 2 2 GvpD gas vesicle protein IstB_IS21 PF01695.17 gi|212223760|ref|YP_002306996.1| - 1.4e-07 31.4 0.3 9.5e-06 25.4 0.0 2.1 2 0 0 2 2 2 1 IstB-like ATP binding protein DnaB_C PF03796.15 gi|212223760|ref|YP_002306996.1| - 8.5e-07 28.6 0.1 2e-06 27.4 0.1 1.7 1 1 0 1 1 1 1 DnaB-like helicase C terminal domain AAA_14 PF13173.6 gi|212223760|ref|YP_002306996.1| - 2.3e-06 27.7 0.0 2.3e-05 24.4 0.0 2.1 1 1 0 1 1 1 1 AAA domain PAXNEB PF05625.11 gi|212223760|ref|YP_002306996.1| - 3.5e-06 26.4 1.2 0.00067 18.9 0.0 2.2 1 1 1 2 2 2 2 PAXNEB protein AAA_22 PF13401.6 gi|212223760|ref|YP_002306996.1| - 2.4e-05 24.6 0.0 3.6e-05 24.1 0.0 1.3 1 0 0 1 1 1 1 AAA domain NACHT PF05729.12 gi|212223760|ref|YP_002306996.1| - 3.9e-05 23.6 0.8 0.00064 19.7 0.8 2.0 1 1 0 1 1 1 1 NACHT domain AAA_24 PF13479.6 gi|212223760|ref|YP_002306996.1| - 6.2e-05 22.8 0.7 0.00037 20.3 0.7 2.0 1 1 0 1 1 1 1 AAA domain MEDS PF14417.6 gi|212223760|ref|YP_002306996.1| - 8.7e-05 22.4 0.1 0.0095 15.8 0.0 2.1 1 1 1 2 2 2 1 MEDS: MEthanogen/methylotroph, DcmR Sensory domain AAA_5 PF07728.14 gi|212223760|ref|YP_002306996.1| - 0.0007 19.6 0.6 0.0011 19.0 0.0 1.7 2 1 0 2 2 1 1 AAA domain (dynein-related subfamily) AAA_16 PF13191.6 gi|212223760|ref|YP_002306996.1| - 0.00085 19.7 0.0 0.0014 19.1 0.0 1.3 1 1 0 1 1 1 1 AAA ATPase domain AAA_30 PF13604.6 gi|212223760|ref|YP_002306996.1| - 0.0011 18.7 0.1 0.0028 17.4 0.1 1.6 1 1 0 1 1 1 1 AAA domain AAA_28 PF13521.6 gi|212223760|ref|YP_002306996.1| - 0.0012 19.1 0.1 0.0069 16.7 0.0 1.9 1 1 1 2 2 2 1 AAA domain AAA PF00004.29 gi|212223760|ref|YP_002306996.1| - 0.0016 18.9 0.8 0.0035 17.8 0.8 1.6 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) DUF2075 PF09848.9 gi|212223760|ref|YP_002306996.1| - 0.0034 16.7 0.4 0.0057 15.9 0.4 1.6 1 1 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) AAA_19 PF13245.6 gi|212223760|ref|YP_002306996.1| - 0.0038 17.6 3.3 0.016 15.6 3.3 1.9 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|212223760|ref|YP_002306996.1| - 0.0044 17.2 0.1 0.0067 16.6 0.1 1.4 1 1 0 1 1 1 1 AAA domain RecA PF00154.21 gi|212223760|ref|YP_002306996.1| - 0.0045 16.5 0.1 0.0085 15.6 0.0 1.5 1 1 0 1 1 1 1 recA bacterial DNA recombination protein Rad51 PF08423.11 gi|212223760|ref|YP_002306996.1| - 0.0049 16.2 0.0 0.0062 15.8 0.0 1.5 1 1 0 1 1 1 1 Rad51 TIP49 PF06068.13 gi|212223760|ref|YP_002306996.1| - 0.0077 15.5 0.5 0.013 14.7 0.0 1.6 2 0 0 2 2 2 1 TIP49 P-loop domain ATPase_2 PF01637.18 gi|212223760|ref|YP_002306996.1| - 0.018 15.0 0.0 0.026 14.4 0.0 1.2 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea CbiA PF01656.23 gi|212223760|ref|YP_002306996.1| - 0.022 14.8 0.0 0.035 14.2 0.0 1.4 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain RuvB_N PF05496.12 gi|212223760|ref|YP_002306996.1| - 0.037 13.8 2.2 0.71 9.6 0.2 2.8 2 1 1 3 3 3 0 Holliday junction DNA helicase RuvB P-loop domain ResIII PF04851.15 gi|212223760|ref|YP_002306996.1| - 0.043 13.8 2.2 0.44 10.5 0.3 2.2 1 1 0 2 2 2 0 Type III restriction enzyme, res subunit AAA_3 PF07726.11 gi|212223760|ref|YP_002306996.1| - 0.051 13.4 0.1 0.1 12.5 0.1 1.5 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_18 PF13238.6 gi|212223760|ref|YP_002306996.1| - 0.057 14.0 0.1 0.11 13.1 0.1 1.6 1 1 0 1 1 1 0 AAA domain CobA_CobO_BtuR PF02572.15 gi|212223760|ref|YP_002306996.1| - 0.082 13.2 0.2 0.16 12.2 0.2 1.5 1 1 0 1 1 1 0 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP MipZ PF09140.11 gi|212223760|ref|YP_002306996.1| - 0.088 12.1 0.0 0.13 11.5 0.0 1.4 1 1 0 1 1 1 0 ATPase MipZ Viral_helicase1 PF01443.18 gi|212223760|ref|YP_002306996.1| - 0.09 12.5 0.1 0.45 10.2 0.0 1.9 1 1 1 2 2 2 0 Viral (Superfamily 1) RNA helicase Rad17 PF03215.15 gi|212223760|ref|YP_002306996.1| - 0.11 12.4 0.1 1.1 9.1 0.1 2.1 1 1 0 1 1 1 0 Rad17 P-loop domain RNA_helicase PF00910.22 gi|212223760|ref|YP_002306996.1| - 0.13 12.7 0.1 0.4 11.1 0.1 1.9 1 1 0 1 1 1 0 RNA helicase DEAD_assoc PF08494.11 gi|212223761|ref|YP_002306997.1| - 2e-53 181.0 0.0 3.9e-53 180.1 0.0 1.5 1 0 0 1 1 1 1 DEAD/H associated DEAD PF00270.29 gi|212223761|ref|YP_002306997.1| - 3.3e-27 95.4 0.0 3.6e-26 92.0 0.0 2.5 3 0 0 3 3 3 1 DEAD/DEAH box helicase LAGLIDADG_3 PF14528.6 gi|212223761|ref|YP_002306997.1| - 5.6e-18 65.0 3.0 2.2e-11 43.9 0.1 3.7 3 0 0 3 3 3 2 LAGLIDADG-like domain Intein_splicing PF14890.6 gi|212223761|ref|YP_002306997.1| - 1.1e-11 44.8 0.0 2.7e-11 43.6 0.0 1.7 1 0 0 1 1 1 1 Intein splicing domain Helicase_C PF00271.31 gi|212223761|ref|YP_002306997.1| - 1.2e-10 41.7 0.1 6.9e-05 23.2 0.0 2.8 2 0 0 2 2 2 2 Helicase conserved C-terminal domain ResIII PF04851.15 gi|212223761|ref|YP_002306997.1| - 1.5e-10 41.3 0.0 3.9e-10 40.0 0.0 1.7 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit T2SSE PF00437.20 gi|212223761|ref|YP_002306997.1| - 0.016 14.2 0.1 0.63 9.1 0.0 2.3 2 0 0 2 2 2 0 Type II/IV secretion system protein NifU PF01106.17 gi|212223762|ref|YP_002306998.1| - 0.066 13.4 0.1 0.11 12.6 0.1 1.4 1 0 0 1 1 1 0 NifU-like domain Glycos_transf_2 PF00535.26 gi|212223763|ref|YP_002306999.1| - 3.5e-39 134.3 0.0 5.2e-39 133.8 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|212223763|ref|YP_002306999.1| - 1.2e-31 110.4 0.0 1.6e-31 110.0 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.6 gi|212223763|ref|YP_002306999.1| - 1.4e-18 67.5 0.5 2.9e-18 66.5 0.5 1.6 1 1 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_transf_21 PF13506.6 gi|212223763|ref|YP_002306999.1| - 4e-15 55.7 0.0 6.8e-15 55.0 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 21 Glyco_tranf_2_2 PF10111.9 gi|212223763|ref|YP_002306999.1| - 2.6e-11 43.5 0.0 8e-10 38.6 0.0 2.1 2 0 0 2 2 2 1 Glycosyltransferase like family 2 Chitin_synth_2 PF03142.15 gi|212223763|ref|YP_002306999.1| - 4e-05 22.4 0.0 0.33 9.5 0.0 3.0 2 1 1 3 3 3 2 Chitin synthase Glyco_tranf_2_4 PF13704.6 gi|212223763|ref|YP_002306999.1| - 0.0067 16.9 0.0 0.013 16.0 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase family 2 PHO4 PF01384.20 gi|212223764|ref|YP_002307000.1| - 2.9e-51 174.5 29.8 3.7e-50 170.9 29.8 2.0 1 1 0 1 1 1 1 Phosphate transporter family TGT PF01702.18 gi|212223765|ref|YP_002307001.1| - 1.6e-80 270.9 0.0 2.2e-80 270.5 0.0 1.1 1 0 0 1 1 1 1 Queuine tRNA-ribosyltransferase TGT_C1 PF14809.6 gi|212223765|ref|YP_002307001.1| - 1.6e-44 150.1 2.6 1.6e-44 150.1 2.6 1.8 2 0 0 2 2 2 1 C1 domain of tRNA-guanine transglycosylase dimerisation TGT_C2 PF14810.6 gi|212223765|ref|YP_002307001.1| - 5.4e-22 77.7 0.0 2.1e-21 75.8 0.0 2.1 2 0 0 2 2 2 1 Patch-forming domain C2 of tRNA-guanine transglycosylase PUA PF01472.20 gi|212223765|ref|YP_002307001.1| - 8e-18 64.2 0.2 2.8e-17 62.5 0.0 2.1 2 0 0 2 2 2 1 PUA domain PUA_3 PF17785.1 gi|212223765|ref|YP_002307001.1| - 0.00027 20.7 0.1 0.017 14.9 0.0 3.2 3 0 0 3 3 3 1 PUA-like domain UPF0113 PF03657.13 gi|212223765|ref|YP_002307001.1| - 0.00046 20.4 0.0 0.0038 17.4 0.0 2.3 2 0 0 2 2 2 1 UPF0113 PUA domain RICTOR_M PF14666.6 gi|212223766|ref|YP_002307002.1| - 0.49 10.2 3.1 12 5.7 0.4 3.4 3 0 0 3 3 3 0 Rapamycin-insensitive companion of mTOR, middle domain DUF763 PF05559.11 gi|212223767|ref|YP_002307003.1| - 1.5e-121 405.4 0.0 1.8e-121 405.1 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF763) HHH PF00633.23 gi|212223767|ref|YP_002307003.1| - 0.0048 16.7 0.0 0.39 10.7 0.0 2.7 2 0 0 2 2 2 1 Helix-hairpin-helix motif DUF1474 PF07342.11 gi|212223767|ref|YP_002307003.1| - 0.11 13.0 0.0 0.23 12.0 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1474) DUF5603 PF18231.1 gi|212223768|ref|YP_002307004.1| - 4.5e-48 161.9 3.8 6.2e-48 161.5 2.2 1.9 2 0 0 2 2 2 1 Domain of unknown function (DUF5603) ParBc PF02195.18 gi|212223768|ref|YP_002307004.1| - 6.2e-10 39.2 0.0 1.6e-09 37.9 0.0 1.6 1 0 0 1 1 1 1 ParB-like nuclease domain DUF1015 PF06245.11 gi|212223768|ref|YP_002307004.1| - 4.6e-05 22.4 0.0 0.084 11.7 0.1 2.4 2 1 0 2 2 2 2 Protein of unknown function (DUF1015) NMT1_3 PF16868.5 gi|212223768|ref|YP_002307004.1| - 0.19 11.1 0.0 0.27 10.6 0.0 1.2 1 0 0 1 1 1 0 NMT1-like family HAD_2 PF13419.6 gi|212223769|ref|YP_002307005.1| - 1.2e-25 90.6 0.0 2e-25 89.9 0.0 1.3 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|212223769|ref|YP_002307005.1| - 1.6e-14 54.7 0.0 6.3e-14 52.8 0.0 1.8 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|212223769|ref|YP_002307005.1| - 6e-11 42.3 0.1 1.3e-10 41.2 0.1 1.5 1 1 0 1 1 1 1 HAD-hyrolase-like HAD PF12710.7 gi|212223769|ref|YP_002307005.1| - 0.00014 22.3 0.0 0.00017 22.0 0.0 1.1 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase zinc_ribbon_2 PF13240.6 gi|212223770|ref|YP_002307006.1| - 0.0023 17.6 3.4 0.013 15.2 3.4 2.2 1 1 0 1 1 1 1 zinc-ribbon domain Prok-RING_1 PF14446.6 gi|212223770|ref|YP_002307006.1| - 0.0067 16.3 0.6 0.015 15.3 0.6 1.5 1 0 0 1 1 1 1 Prokaryotic RING finger family 1 DZR PF12773.7 gi|212223770|ref|YP_002307006.1| - 0.0079 16.2 0.3 0.017 15.2 0.3 1.5 1 0 0 1 1 1 1 Double zinc ribbon HypA PF01155.19 gi|212223770|ref|YP_002307006.1| - 0.03 14.4 0.1 0.8 9.8 0.3 2.5 2 0 0 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-NADH-PPase PF09297.11 gi|212223770|ref|YP_002307006.1| - 0.042 13.5 2.4 0.062 13.0 1.2 2.0 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain zf-ribbon_3 PF13248.6 gi|212223770|ref|YP_002307006.1| - 0.069 12.6 4.4 0.4 10.1 4.4 2.1 1 1 0 1 1 1 0 zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|212223770|ref|YP_002307006.1| - 0.079 13.1 1.6 0.18 11.9 1.6 1.6 1 0 0 1 1 1 0 Zinc ribbon domain HNH PF01844.23 gi|212223770|ref|YP_002307006.1| - 0.13 12.4 1.3 4.2 7.6 0.3 2.6 2 0 0 2 2 2 0 HNH endonuclease zf-Mss51 PF13824.6 gi|212223770|ref|YP_002307006.1| - 0.16 12.1 4.0 7.2 6.8 0.1 2.6 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 Cys_rich_CPXG PF14255.6 gi|212223770|ref|YP_002307006.1| - 0.18 11.8 2.1 0.28 11.1 0.3 2.1 2 0 0 2 2 2 0 Cysteine-rich CPXCG zf_UBZ PF18439.1 gi|212223770|ref|YP_002307006.1| - 4.8 6.9 6.4 2.2 7.9 0.1 3.1 3 0 0 3 3 3 0 Ubiquitin-Binding Zinc Finger zinc_ribbon_5 PF13719.6 gi|212223771|ref|YP_002307007.1| - 2e-06 27.5 1.9 0.0044 16.7 0.1 2.3 2 0 0 2 2 2 2 zinc-ribbon domain zinc_ribbon_4 PF13717.6 gi|212223771|ref|YP_002307007.1| - 3.7e-06 26.8 1.5 1.6e-05 24.7 1.5 1.9 1 1 1 2 2 2 2 zinc-ribbon domain PepSY PF03413.19 gi|212223771|ref|YP_002307007.1| - 0.012 16.2 0.0 0.023 15.2 0.0 1.5 1 0 0 1 1 1 0 Peptidase propeptide and YPEB domain zf-C2H2_4 PF13894.6 gi|212223771|ref|YP_002307007.1| - 0.015 16.0 2.3 1 10.4 0.2 2.6 2 0 0 2 2 2 0 C2H2-type zinc finger HypA PF01155.19 gi|212223771|ref|YP_002307007.1| - 0.027 14.5 0.4 0.056 13.5 0.4 1.5 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-C2H2 PF00096.26 gi|212223771|ref|YP_002307007.1| - 0.028 14.9 2.9 1.4 9.5 0.2 2.5 2 0 0 2 2 2 0 Zinc finger, C2H2 type Ogr_Delta PF04606.12 gi|212223771|ref|YP_002307007.1| - 0.031 14.3 0.6 0.52 10.3 0.0 2.3 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger zf-CHCC PF10276.9 gi|212223771|ref|YP_002307007.1| - 0.032 14.3 0.7 0.21 11.7 0.2 2.2 2 0 0 2 2 2 0 Zinc-finger domain zf-Di19 PF05605.12 gi|212223771|ref|YP_002307007.1| - 0.047 14.0 5.2 0.17 12.2 0.3 2.3 1 1 1 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding Prok-RING_1 PF14446.6 gi|212223771|ref|YP_002307007.1| - 0.063 13.2 2.2 0.1 12.5 2.2 1.3 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 zf-C2H2_9 PF16293.5 gi|212223771|ref|YP_002307007.1| - 0.11 12.4 0.3 2.1 8.3 0.0 2.3 1 1 1 2 2 2 0 C2H2 type zinc-finger (1 copy) Zn_Tnp_IS91 PF14319.6 gi|212223771|ref|YP_002307007.1| - 0.15 12.1 0.0 0.26 11.4 0.0 1.3 1 0 0 1 1 1 0 Transposase zinc-binding domain Pet100 PF09803.9 gi|212223771|ref|YP_002307007.1| - 0.17 12.4 2.7 1.5 9.4 0.1 2.8 3 0 0 3 3 3 0 Pet100 Zn_ribbon_SprT PF17283.2 gi|212223771|ref|YP_002307007.1| - 0.19 11.7 0.9 0.3 11.0 0.9 1.3 1 0 0 1 1 1 0 SprT-like zinc ribbon domain ADK_lid PF05191.14 gi|212223771|ref|YP_002307007.1| - 0.19 11.7 0.3 4.7 7.3 0.0 2.3 2 0 0 2 2 2 0 Adenylate kinase, active site lid CpXC PF14353.6 gi|212223771|ref|YP_002307007.1| - 0.2 11.7 3.6 1.3 9.1 0.1 2.3 1 1 1 2 2 2 0 CpXC protein DZR PF12773.7 gi|212223771|ref|YP_002307007.1| - 0.21 11.7 1.3 0.37 10.9 1.3 1.3 1 0 0 1 1 1 0 Double zinc ribbon Rad50_zn_hook PF04423.14 gi|212223771|ref|YP_002307007.1| - 0.21 11.5 0.3 5.5 6.9 0.0 2.3 2 0 0 2 2 2 0 Rad50 zinc hook motif TF_Zn_Ribbon PF08271.12 gi|212223771|ref|YP_002307007.1| - 0.26 10.8 1.8 1.9 8.1 0.1 2.3 2 0 0 2 2 2 0 TFIIB zinc-binding zf-ISL3 PF14690.6 gi|212223771|ref|YP_002307007.1| - 0.26 12.0 0.7 7 7.4 0.0 2.5 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 UPF0547 PF10571.9 gi|212223771|ref|YP_002307007.1| - 0.27 11.4 5.6 0.82 9.8 5.6 1.7 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 Cys_rich_CPXG PF14255.6 gi|212223771|ref|YP_002307007.1| - 0.27 11.2 1.1 2.5 8.1 0.1 2.3 2 0 0 2 2 2 0 Cysteine-rich CPXCG zf-ribbon_3 PF13248.6 gi|212223771|ref|YP_002307007.1| - 0.6 9.6 6.0 3.9 7.0 6.0 2.1 1 1 0 1 1 1 0 zinc-ribbon domain zinc_ribbon_9 PF14369.6 gi|212223771|ref|YP_002307007.1| - 0.81 10.0 4.6 7.6 6.9 5.0 2.1 1 1 1 2 2 2 0 zinc-ribbon zf-H2C2_2 PF13465.6 gi|212223771|ref|YP_002307007.1| - 1.3 9.6 3.3 23 5.7 0.4 2.4 2 0 0 2 2 2 0 Zinc-finger double domain zf-RING_7 PF02591.15 gi|212223771|ref|YP_002307007.1| - 2.1 8.6 5.1 4.8 7.5 0.2 2.7 3 0 0 3 3 3 0 C4-type zinc ribbon domain YacG PF03884.14 gi|212223771|ref|YP_002307007.1| - 3.3 7.5 4.3 43 4.0 0.1 2.2 1 1 1 2 2 2 0 DNA gyrase inhibitor YacG VBS PF08913.10 gi|212223772|ref|YP_002307008.1| - 0.0045 17.4 0.0 0.88 10.0 0.0 2.2 2 0 0 2 2 2 2 Vinculin Binding Site Surfac_D-trimer PF09006.11 gi|212223772|ref|YP_002307008.1| - 0.13 12.2 0.3 0.92 9.4 0.0 2.5 2 1 1 3 3 3 0 Lung surfactant protein D coiled-coil trimerisation Cytokin-bind PF09265.10 gi|212223772|ref|YP_002307008.1| - 0.19 11.1 0.0 0.27 10.6 0.0 1.2 1 0 0 1 1 1 0 Cytokinin dehydrogenase 1, FAD and cytokinin binding Band_7_1 PF13421.6 gi|212223773|ref|YP_002307009.1| - 3.8e-35 121.5 0.1 5.5e-35 121.0 0.1 1.2 1 0 0 1 1 1 1 SPFH domain-Band 7 family Band_7 PF01145.25 gi|212223773|ref|YP_002307009.1| - 7.8e-20 71.6 0.1 1.1e-19 71.2 0.1 1.2 1 0 0 1 1 1 1 SPFH domain / Band 7 family zinc_ribbon_2 PF13240.6 gi|212223773|ref|YP_002307009.1| - 1.5e-13 49.9 11.9 4e-09 35.9 4.2 2.4 2 0 0 2 2 2 2 zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|212223773|ref|YP_002307009.1| - 7.9e-12 44.2 12.6 8.5e-09 34.5 4.1 2.4 2 0 0 2 2 2 2 zinc-ribbon domain DZR PF12773.7 gi|212223773|ref|YP_002307009.1| - 1.6e-10 40.8 5.5 4.7e-10 39.3 5.6 1.7 1 1 0 1 1 1 1 Double zinc ribbon zinc_ribbon_15 PF17032.5 gi|212223773|ref|YP_002307009.1| - 8.7e-06 26.4 0.7 0.00076 20.2 0.0 2.4 2 0 0 2 2 2 1 zinc-ribbon family UPF0547 PF10571.9 gi|212223773|ref|YP_002307009.1| - 0.00014 21.9 17.3 0.0066 16.5 7.3 2.4 2 0 0 2 2 2 2 Uncharacterised protein family UPF0547 zf-NADH-PPase PF09297.11 gi|212223773|ref|YP_002307009.1| - 0.00049 19.7 7.9 0.39 10.4 1.2 3.5 3 0 0 3 3 3 2 NADH pyrophosphatase zinc ribbon domain zf-C4H2 PF10146.9 gi|212223773|ref|YP_002307009.1| - 0.0085 16.4 1.1 0.012 16.0 1.1 1.2 1 0 0 1 1 1 1 Zinc finger-containing protein Nudix_N_2 PF14803.6 gi|212223773|ref|YP_002307009.1| - 0.055 13.4 10.3 2.2 8.3 0.2 3.4 3 0 0 3 3 3 0 Nudix N-terminal DUF2116 PF09889.9 gi|212223773|ref|YP_002307009.1| - 0.1 12.6 4.5 0.85 9.6 1.1 2.3 2 0 0 2 2 2 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) zf-CHCC PF10276.9 gi|212223773|ref|YP_002307009.1| - 0.23 11.5 6.8 4.3 7.5 0.3 3.2 3 0 0 3 3 3 0 Zinc-finger domain DHHC PF01529.20 gi|212223773|ref|YP_002307009.1| - 0.54 10.4 3.0 0.75 9.9 1.1 2.0 1 1 1 2 2 2 0 DHHC palmitoyltransferase PknG_rubred PF16919.5 gi|212223773|ref|YP_002307009.1| - 0.75 9.9 10.3 2.9 8.1 2.2 3.8 2 1 1 3 3 3 0 Protein kinase G rubredoxin domain DUF3268 PF11672.8 gi|212223773|ref|YP_002307009.1| - 0.92 9.8 4.4 3.1 8.1 0.9 2.5 2 0 0 2 2 2 0 zinc-finger-containing domain Prok-RING_1 PF14446.6 gi|212223773|ref|YP_002307009.1| - 1 9.3 9.3 0.84 9.6 4.5 2.2 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 OrfB_Zn_ribbon PF07282.11 gi|212223773|ref|YP_002307009.1| - 1.7 8.6 3.9 3.1 7.8 0.9 2.2 1 1 0 2 2 2 0 Putative transposase DNA-binding domain Rad50_zn_hook PF04423.14 gi|212223773|ref|YP_002307009.1| - 2.2 8.2 5.3 14 5.6 0.1 2.9 3 0 0 3 3 3 0 Rad50 zinc hook motif DNA_ligase_ZBD PF03119.16 gi|212223773|ref|YP_002307009.1| - 2.8 8.0 14.6 1.4 9.1 0.2 3.8 3 1 0 3 3 3 0 NAD-dependent DNA ligase C4 zinc finger domain zf-C3HC4_3 PF13920.6 gi|212223773|ref|YP_002307009.1| - 3 7.8 8.0 14 5.7 7.9 2.2 1 1 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) ADK_lid PF05191.14 gi|212223773|ref|YP_002307009.1| - 3.4 7.7 7.4 32 4.6 4.0 2.4 2 0 0 2 2 2 0 Adenylate kinase, active site lid Zn-ribbon_8 PF09723.10 gi|212223773|ref|YP_002307009.1| - 3.4 7.8 10.1 9.6 6.4 3.4 2.8 1 1 2 3 3 3 0 Zinc ribbon domain zf_UBZ PF18439.1 gi|212223773|ref|YP_002307009.1| - 3.8 7.2 5.7 26 4.5 0.1 3.1 2 1 1 3 3 3 0 Ubiquitin-Binding Zinc Finger DUF2256 PF10013.9 gi|212223773|ref|YP_002307009.1| - 4.1 7.6 7.0 21 5.4 0.2 3.2 2 1 1 3 3 3 0 Uncharacterized protein conserved in bacteria (DUF2256) zf-IS66 PF13005.7 gi|212223773|ref|YP_002307009.1| - 5 7.6 10.3 21 5.6 0.7 4.0 2 1 1 3 3 3 0 zinc-finger binding domain of transposase IS66 YhfH PF14149.6 gi|212223773|ref|YP_002307009.1| - 8.6 6.4 8.5 11 6.1 0.3 3.5 4 0 0 4 4 3 0 YhfH-like protein Ogr_Delta PF04606.12 gi|212223773|ref|YP_002307009.1| - 9.4 6.3 9.1 43 4.2 0.4 3.3 3 0 0 3 3 3 0 Ogr/Delta-like zinc finger SPOB_ab PF14682.6 gi|212223774|ref|YP_002307010.1| - 0.0082 16.2 0.4 0.029 14.4 0.1 2.2 2 0 0 2 2 2 1 Sporulation initiation phospho-transferase B, C-terminal Peptidase_M42 PF05343.14 gi|212223775|ref|YP_002307011.1| - 7.8e-72 241.7 0.0 9.6e-72 241.5 0.0 1.1 1 0 0 1 1 1 1 M42 glutamyl aminopeptidase Peptidase_M20 PF01546.28 gi|212223775|ref|YP_002307011.1| - 0.0027 17.4 0.3 0.0055 16.4 0.3 1.5 1 1 0 1 1 1 1 Peptidase family M20/M25/M40 Peptidase_M28 PF04389.17 gi|212223775|ref|YP_002307011.1| - 0.0063 16.2 0.1 0.98 9.1 0.0 2.2 2 0 0 2 2 2 2 Peptidase family M28 Mem_trans PF03547.18 gi|212223776|ref|YP_002307012.1| - 2.2e-11 42.8 25.4 7e-06 24.7 10.7 2.0 2 0 0 2 2 2 2 Membrane transport protein HTH_5 PF01022.20 gi|212223777|ref|YP_002307013.1| - 1.9e-13 50.0 0.5 5.1e-13 48.7 0.1 2.0 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|212223777|ref|YP_002307013.1| - 9.5e-13 48.0 0.4 2e-11 43.8 0.0 2.3 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_IclR PF09339.10 gi|212223777|ref|YP_002307013.1| - 0.00013 21.7 0.8 0.00026 20.7 0.1 2.0 2 1 0 2 2 2 1 IclR helix-turn-helix domain MarR_2 PF12802.7 gi|212223777|ref|YP_002307013.1| - 0.00031 20.6 0.0 0.00048 20.0 0.0 1.4 1 0 0 1 1 1 1 MarR family MarR PF01047.22 gi|212223777|ref|YP_002307013.1| - 0.0023 17.8 0.0 0.0055 16.6 0.0 1.7 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|212223777|ref|YP_002307013.1| - 0.0028 17.5 0.0 0.0073 16.2 0.0 1.7 1 1 1 2 2 2 1 Sugar-specific transcriptional regulator TrmB DprA_WH PF17782.1 gi|212223777|ref|YP_002307013.1| - 0.0076 16.3 0.1 0.051 13.7 0.0 2.1 1 1 1 2 2 2 1 DprA winged helix domain HxlR PF01638.17 gi|212223777|ref|YP_002307013.1| - 0.016 15.0 1.6 0.32 10.9 0.1 2.4 1 1 0 2 2 2 0 HxlR-like helix-turn-helix DUF812 PF05667.11 gi|212223777|ref|YP_002307013.1| - 0.017 14.0 1.5 0.02 13.8 1.5 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF812) HTH_11 PF08279.12 gi|212223777|ref|YP_002307013.1| - 0.067 13.2 0.1 0.47 10.4 0.0 2.3 2 0 0 2 2 2 0 HTH domain Fib_alpha PF08702.10 gi|212223777|ref|YP_002307013.1| - 0.082 13.1 0.1 0.096 12.9 0.1 1.2 1 0 0 1 1 1 0 Fibrinogen alpha/beta chain family HTH_24 PF13412.6 gi|212223777|ref|YP_002307013.1| - 0.091 12.3 0.5 0.27 10.8 0.0 2.2 2 1 0 2 2 2 0 Winged helix-turn-helix DNA-binding MCD_N PF17408.2 gi|212223777|ref|YP_002307013.1| - 0.093 12.9 0.4 0.38 10.9 0.1 2.1 1 1 1 2 2 2 0 Malonyl-CoA decarboxylase N-terminal domain MazE_antitoxin PF04014.18 gi|212223777|ref|YP_002307013.1| - 0.16 11.9 0.7 5.6 7.0 0.1 2.5 2 0 0 2 2 2 0 Antidote-toxin recognition MazE, bacterial antitoxin YojJ PF10372.9 gi|212223777|ref|YP_002307013.1| - 0.19 11.8 0.9 0.7 10.0 0.9 2.0 1 1 0 1 1 1 0 Bacterial membrane-spanning protein N-terminus DUF4988 PF16378.5 gi|212223777|ref|YP_002307013.1| - 0.2 11.3 0.2 0.25 11.0 0.2 1.2 1 0 0 1 1 1 0 Domain of unknown function Prefoldin_2 PF01920.20 gi|212223777|ref|YP_002307013.1| - 0.35 10.8 4.3 0.27 11.2 2.7 1.7 2 0 0 2 2 2 0 Prefoldin subunit HK97-gp10_like PF04883.12 gi|212223777|ref|YP_002307013.1| - 0.61 11.1 2.6 1.8 9.6 0.7 2.2 2 1 0 2 2 2 0 Bacteriophage HK97-gp10, putative tail-component Nup54_57_C PF18570.1 gi|212223777|ref|YP_002307013.1| - 2.1 8.0 6.0 0.89 9.2 1.2 2.5 2 0 0 2 2 2 0 NUP57/Nup54 C-terminal domain FecR PF04773.13 gi|212223778|ref|YP_002307014.1| - 0.0057 17.3 0.3 2.8 8.6 0.1 2.7 1 1 1 2 2 2 2 FecR protein HTH_24 PF13412.6 gi|212223778|ref|YP_002307014.1| - 0.012 15.2 0.1 0.025 14.1 0.1 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding UbiD PF01977.16 gi|212223778|ref|YP_002307014.1| - 0.12 11.3 0.0 0.17 10.8 0.0 1.1 1 0 0 1 1 1 0 3-octaprenyl-4-hydroxybenzoate carboxy-lyase DUF4097 PF13349.6 gi|212223779|ref|YP_002307015.1| - 9.4e-13 48.1 3.4 3.2e-07 30.0 0.3 2.2 1 1 1 2 2 2 2 Putative adhesin MAP PF03642.13 gi|212223779|ref|YP_002307015.1| - 0.087 13.1 0.1 0.2 12.0 0.1 1.6 1 0 0 1 1 1 0 MAP domain DUF4097 PF13349.6 gi|212223781|ref|YP_002307017.1| - 5.2e-06 26.0 0.7 9.7e-06 25.1 0.7 1.5 1 1 0 1 1 1 1 Putative adhesin MFS_1 PF07690.16 gi|212223782|ref|YP_002307018.1| - 1.7e-30 106.2 32.4 1.7e-30 106.2 32.4 1.9 1 1 1 2 2 2 1 Major Facilitator Superfamily MFS_3 PF05977.13 gi|212223782|ref|YP_002307018.1| - 7.9e-23 80.6 18.0 1e-22 80.3 18.0 1.0 1 0 0 1 1 1 1 Transmembrane secretion effector MFS_2 PF13347.6 gi|212223782|ref|YP_002307018.1| - 2.7e-11 42.7 6.4 2.7e-11 42.7 6.4 2.5 1 1 1 2 2 2 2 MFS/sugar transport protein Cob_adeno_trans PF01923.18 gi|212223783|ref|YP_002307019.1| - 6.3e-50 169.5 0.0 7.1e-50 169.3 0.0 1.0 1 0 0 1 1 1 1 Cobalamin adenosyltransferase SpoIIID PF12116.8 gi|212223783|ref|YP_002307019.1| - 0.0051 16.9 0.0 0.0096 16.0 0.0 1.4 1 0 0 1 1 1 1 Stage III sporulation protein D Nop16 PF09420.10 gi|212223783|ref|YP_002307019.1| - 0.065 13.3 0.1 0.094 12.7 0.1 1.3 1 0 0 1 1 1 0 Ribosome biogenesis protein Nop16 COG4 PF08318.12 gi|212223783|ref|YP_002307019.1| - 0.083 12.0 0.0 7 5.6 0.0 2.1 2 0 0 2 2 2 0 COG4 transport protein ABC_transp_aux PF09822.9 gi|212223784|ref|YP_002307020.1| - 1e-09 38.3 0.4 1.8e-09 37.5 0.4 1.5 1 0 0 1 1 1 1 ABC-type uncharacterized transport system ThuA PF06283.11 gi|212223784|ref|YP_002307020.1| - 8.7e-08 32.6 0.0 2.7e-07 31.0 0.0 1.8 1 1 0 1 1 1 1 Trehalose utilisation DDOST_48kD PF03345.14 gi|212223784|ref|YP_002307020.1| - 5.6e-07 28.7 0.1 1.5e-06 27.4 0.0 1.7 2 0 0 2 2 2 1 Oligosaccharyltransferase 48 kDa subunit beta DUF2194 PF09960.9 gi|212223784|ref|YP_002307020.1| - 1.6e-05 23.5 0.3 1.6e-05 23.5 0.3 1.5 2 0 0 2 2 2 1 Uncharacterised protein conserved in bacteria (DUF2194) tRNA_anti-codon PF01336.25 gi|212223784|ref|YP_002307020.1| - 0.00021 21.2 3.1 0.61 10.1 0.0 4.0 4 0 0 4 4 4 2 OB-fold nucleic acid binding domain CARDB PF07705.11 gi|212223784|ref|YP_002307020.1| - 0.00023 21.3 1.1 0.0007 19.8 0.2 2.3 2 0 0 2 2 2 1 CARDB DUF4350 PF14258.6 gi|212223784|ref|YP_002307020.1| - 0.00046 20.6 0.0 0.0014 19.0 0.0 1.9 1 0 0 1 1 1 1 Domain of unknown function (DUF4350) GATase1_like PF07090.11 gi|212223784|ref|YP_002307020.1| - 0.0035 16.8 0.1 0.013 15.0 0.1 1.9 1 1 0 1 1 1 1 Putative glutamine amidotransferase DUF1726 PF08351.11 gi|212223784|ref|YP_002307020.1| - 0.016 15.2 0.0 0.037 14.0 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF1726) DUF4131 PF13567.6 gi|212223784|ref|YP_002307020.1| - 0.032 13.9 1.2 1.9 8.1 0.0 2.9 3 1 0 3 3 3 0 Domain of unknown function (DUF4131) DUF166 PF02593.14 gi|212223784|ref|YP_002307020.1| - 0.033 13.7 0.0 0.059 12.9 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function DUF4159 PF13709.6 gi|212223784|ref|YP_002307020.1| - 0.11 11.9 0.0 0.28 10.6 0.0 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4159) IF-2B PF01008.17 gi|212223785|ref|YP_002307021.1| - 9.8e-53 179.2 0.0 1.9e-52 178.2 0.0 1.5 1 1 0 1 1 1 1 Initiation factor 2 subunit family PLDc_2 PF13091.6 gi|212223785|ref|YP_002307021.1| - 0.16 11.8 0.0 0.36 10.7 0.0 1.5 1 0 0 1 1 1 0 PLD-like domain MoCF_biosynth PF00994.24 gi|212223786|ref|YP_002307022.1| - 2.2e-35 121.4 0.0 3.3e-35 120.8 0.0 1.3 1 0 0 1 1 1 1 Probable molybdopterin binding domain NIL PF09383.10 gi|212223786|ref|YP_002307022.1| - 0.062 13.2 0.0 0.15 11.9 0.0 1.7 1 0 0 1 1 1 0 NIL domain EF-1_beta_acid PF10587.9 gi|212223786|ref|YP_002307022.1| - 9.4 6.8 7.0 2.5 8.6 3.4 1.9 2 0 0 2 2 2 0 Eukaryotic elongation factor 1 beta central acidic region Gp_dh_C PF02800.20 gi|212223787|ref|YP_002307023.1| - 1.7e-30 105.7 0.1 2.3e-30 105.2 0.1 1.2 1 0 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain DapB_N PF01113.20 gi|212223787|ref|YP_002307023.1| - 7e-14 52.0 0.6 2.3e-13 50.3 0.3 1.9 1 1 1 2 2 2 1 Dihydrodipicolinate reductase, N-terminus Gp_dh_N PF00044.24 gi|212223787|ref|YP_002307023.1| - 2e-05 24.9 1.0 7.6e-05 23.0 0.0 2.5 4 0 0 4 4 4 1 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.19 gi|212223787|ref|YP_002307023.1| - 0.00051 19.4 0.1 0.011 15.0 0.1 2.4 1 1 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain GFO_IDH_MocA PF01408.22 gi|212223787|ref|YP_002307023.1| - 0.0016 19.3 0.0 0.0056 17.5 0.0 2.0 1 1 1 2 2 2 1 Oxidoreductase family, NAD-binding Rossmann fold NAD_binding_3 PF03447.16 gi|212223787|ref|YP_002307023.1| - 0.017 15.7 0.0 0.27 11.9 0.0 2.7 2 1 0 2 2 2 0 Homoserine dehydrogenase, NAD binding domain Sacchrp_dh_NADP PF03435.18 gi|212223787|ref|YP_002307023.1| - 0.035 14.3 0.0 0.091 13.0 0.0 1.8 1 1 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain Trp_Tyr_perm PF03222.13 gi|212223788|ref|YP_002307024.1| - 1.5e-36 126.3 36.9 5.3e-36 124.5 36.9 1.7 1 1 0 1 1 1 1 Tryptophan/tyrosine permease family Aa_trans PF01490.18 gi|212223788|ref|YP_002307024.1| - 3.3e-16 59.0 33.8 1.2e-14 53.8 33.8 2.5 1 1 0 1 1 1 1 Transmembrane amino acid transporter protein Spore_permease PF03845.13 gi|212223788|ref|YP_002307024.1| - 5.1e-06 25.5 18.2 5.1e-06 25.5 18.2 2.2 2 1 0 2 2 2 1 Spore germination protein DUF167 PF02594.16 gi|212223789|ref|YP_002307025.1| - 3.6e-24 84.7 0.2 4.3e-24 84.4 0.2 1.1 1 0 0 1 1 1 1 Uncharacterised ACR, YggU family COG1872 DUF402 PF04167.13 gi|212223790|ref|YP_002307026.1| - 2e-13 50.3 0.6 2e-13 50.3 0.6 1.6 2 0 0 2 2 2 1 Protein of unknown function (DUF402) DUF2111 PF09884.9 gi|212223790|ref|YP_002307026.1| - 0.11 12.5 0.1 0.18 11.9 0.1 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2111) HGTP_anticodon PF03129.20 gi|212223791|ref|YP_002307027.1| - 5e-25 87.5 0.8 4e-24 84.6 0.2 2.5 2 0 0 2 2 2 1 Anticodon binding domain tRNA-synt_2b PF00587.25 gi|212223791|ref|YP_002307027.1| - 1.5e-11 44.6 0.4 1.4e-10 41.5 0.1 2.5 2 1 0 2 2 2 1 tRNA synthetase class II core domain (G, H, P, S and T) tRNA-synt_2 PF00152.20 gi|212223791|ref|YP_002307027.1| - 1.1e-05 24.7 0.8 0.033 13.3 0.2 2.3 2 0 0 2 2 2 2 tRNA synthetases class II (D, K and N) zf-ribbon_3 PF13248.6 gi|212223791|ref|YP_002307027.1| - 0.026 14.0 0.2 0.46 10.0 0.0 2.3 2 0 0 2 2 2 0 zinc-ribbon domain tRNA-synt_2d PF01409.20 gi|212223791|ref|YP_002307027.1| - 0.042 13.3 0.0 0.37 10.2 0.0 2.5 1 1 0 1 1 1 0 tRNA synthetases class II core domain (F) DNA_RNApol_7kD PF03604.13 gi|212223791|ref|YP_002307027.1| - 0.043 13.5 1.8 4.2 7.1 0.2 2.4 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit Zn-ribbon_8 PF09723.10 gi|212223791|ref|YP_002307027.1| - 0.1 12.8 3.1 1.4 9.1 3.0 2.4 1 1 1 2 2 2 0 Zinc ribbon domain HypA PF01155.19 gi|212223791|ref|YP_002307027.1| - 0.12 12.5 0.0 0.26 11.3 0.0 1.5 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-C2H2_4 PF13894.6 gi|212223791|ref|YP_002307027.1| - 0.39 11.7 0.9 2.2e+02 3.1 0.0 3.4 3 0 0 3 3 3 0 C2H2-type zinc finger LSM PF01423.22 gi|212223792|ref|YP_002307028.1| - 2.4e-18 65.6 0.2 2.6e-18 65.4 0.2 1.0 1 0 0 1 1 1 1 LSM domain Ribosomal_L37e PF01907.19 gi|212223793|ref|YP_002307029.1| - 1.1e-21 76.7 14.8 1.3e-21 76.4 14.8 1.1 1 0 0 1 1 1 1 Ribosomal protein L37e HypA PF01155.19 gi|212223793|ref|YP_002307029.1| - 0.043 13.8 0.8 0.053 13.5 0.8 1.1 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA MatE PF01554.18 gi|212223794|ref|YP_002307030.1| - 1.6e-71 239.2 34.7 1.3e-38 132.2 11.0 2.9 3 1 1 4 4 4 2 MatE Polysacc_synt_C PF14667.6 gi|212223794|ref|YP_002307030.1| - 1.8e-07 31.3 4.9 1.8e-07 31.3 4.9 4.2 4 2 0 4 4 4 2 Polysaccharide biosynthesis C-terminal domain Polysacc_synt_3 PF13440.6 gi|212223794|ref|YP_002307030.1| - 1.1e-06 28.1 7.4 1.3e-05 24.5 1.9 2.9 2 1 1 3 3 3 2 Polysaccharide biosynthesis protein VIT1 PF01988.19 gi|212223795|ref|YP_002307031.1| - 1.4e-46 159.1 5.0 2e-46 158.6 5.0 1.2 1 0 0 1 1 1 1 VIT family Rubrerythrin PF02915.17 gi|212223795|ref|YP_002307031.1| - 8e-07 29.5 2.4 8e-07 29.5 2.4 1.8 2 0 0 2 2 2 1 Rubrerythrin DUF3231 PF11553.8 gi|212223795|ref|YP_002307031.1| - 0.081 12.5 0.0 0.23 11.1 0.0 1.8 1 0 0 1 1 1 0 Protein of unknown function (DUF3231) TPR_22 PF18833.1 gi|212223795|ref|YP_002307031.1| - 0.11 12.6 0.9 2.6 8.2 0.1 2.6 2 1 1 3 3 3 0 Tetratricopeptide repeat DUF3464 PF11947.8 gi|212223795|ref|YP_002307031.1| - 0.12 12.1 0.2 0.24 11.1 0.1 1.5 1 1 0 1 1 1 0 Photosynthesis affected mutant 68 Band_3_cyto PF07565.13 gi|212223795|ref|YP_002307031.1| - 0.12 12.1 0.0 0.21 11.4 0.0 1.4 1 0 0 1 1 1 0 Band 3 cytoplasmic domain TRM PF02005.16 gi|212223796|ref|YP_002307032.1| - 5.9e-115 384.4 0.0 7e-115 384.2 0.0 1.0 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase Met_10 PF02475.16 gi|212223796|ref|YP_002307032.1| - 4.9e-05 23.2 0.0 9.6e-05 22.2 0.0 1.4 1 1 0 1 1 1 1 Met-10+ like-protein DUF2067 PF09840.9 gi|212223796|ref|YP_002307032.1| - 0.0099 15.5 0.1 0.093 12.3 0.0 2.2 2 0 0 2 2 2 1 Uncharacterized protein conserved in archaea (DUF2067) Methyltransf_16 PF10294.9 gi|212223796|ref|YP_002307032.1| - 0.16 11.7 0.0 0.25 11.1 0.0 1.2 1 0 0 1 1 1 0 Lysine methyltransferase Ribosomal_L35Ae PF01247.18 gi|212223797|ref|YP_002307033.1| - 3.4e-14 52.8 0.0 4.9e-14 52.3 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L35Ae RimM PF01782.18 gi|212223797|ref|YP_002307033.1| - 1.2e-07 31.8 0.2 0.0032 17.6 0.1 2.1 2 0 0 2 2 2 2 RimM N-terminal domain Rot1 PF10681.9 gi|212223797|ref|YP_002307033.1| - 0.013 15.0 0.0 0.017 14.7 0.0 1.1 1 0 0 1 1 1 0 Chaperone for protein-folding within the ER, fungal HAD_2 PF13419.6 gi|212223798|ref|YP_002307034.1| - 2.4e-05 24.5 0.3 5.6e-05 23.3 0.3 1.7 1 1 1 2 2 2 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|212223798|ref|YP_002307034.1| - 0.0056 17.0 0.0 0.021 15.1 0.0 1.8 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|212223798|ref|YP_002307034.1| - 0.0058 17.0 0.0 0.0092 16.4 0.0 1.3 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.6 gi|212223798|ref|YP_002307034.1| - 0.0075 16.4 0.0 4.3 7.5 0.0 2.4 2 0 0 2 2 2 2 Haloacid dehalogenase-like hydrolase DUF1704 PF08014.11 gi|212223798|ref|YP_002307034.1| - 0.16 11.0 0.0 0.2 10.6 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF1704) Hydrolase_3 PF08282.12 gi|212223798|ref|YP_002307034.1| - 0.16 11.7 0.0 0.71 9.6 0.0 1.9 2 0 0 2 2 2 0 haloacid dehalogenase-like hydrolase Peptidase_M24 PF00557.24 gi|212223799|ref|YP_002307035.1| - 1.8e-70 236.9 1.5 2.4e-70 236.5 1.5 1.1 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.18 gi|212223799|ref|YP_002307035.1| - 2.1e-23 83.4 0.0 4e-23 82.5 0.0 1.5 1 0 0 1 1 1 1 Creatinase/Prolidase N-terminal domain eRF1_1 PF03463.15 gi|212223800|ref|YP_002307036.1| - 8.7e-29 100.1 0.2 1.5e-28 99.4 0.2 1.4 1 0 0 1 1 1 1 eRF1 domain 1 eRF1_3 PF03465.15 gi|212223800|ref|YP_002307036.1| - 3e-26 92.1 1.5 9.3e-26 90.5 1.5 1.9 1 0 0 1 1 1 1 eRF1 domain 3 eRF1_2 PF03464.15 gi|212223800|ref|YP_002307036.1| - 4e-17 62.8 0.2 8.7e-17 61.7 0.2 1.6 1 0 0 1 1 1 1 eRF1 domain 2 baeRF_family10 PF18854.1 gi|212223800|ref|YP_002307036.1| - 1.7e-05 25.1 0.2 5.7e-05 23.4 0.2 2.0 1 1 0 1 1 1 1 Bacterial archaeo-eukaryotic release factor family 10 Host_attach PF10116.9 gi|212223800|ref|YP_002307036.1| - 5.4e-05 23.8 0.0 0.00017 22.1 0.0 1.8 1 0 0 1 1 1 1 Protein required for attachment to host cells baeRF_family12 PF18856.1 gi|212223800|ref|YP_002307036.1| - 0.0002 21.9 3.0 0.00021 21.9 0.3 2.4 2 1 1 3 3 3 1 Bacterial archaeo-eukaryotic release factor family 12 baeRF_family5 PF18846.1 gi|212223800|ref|YP_002307036.1| - 0.0011 19.2 0.1 0.0031 17.7 0.1 1.7 1 0 0 1 1 1 1 Bacterial archaeo-eukaryotic release factor family 5 baeRF_family3 PF18845.1 gi|212223800|ref|YP_002307036.1| - 0.026 14.8 0.8 0.12 12.6 0.5 2.2 1 1 0 1 1 1 0 Bacterial archaeo-eukaryotic release factor family 3 DUF2183 PF09949.9 gi|212223800|ref|YP_002307036.1| - 0.051 13.9 0.0 1.2 9.6 0.0 2.5 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2183) Rhabdo_NV PF02484.15 gi|212223800|ref|YP_002307036.1| - 0.061 13.5 0.3 0.99 9.6 0.0 2.9 2 1 1 3 3 3 0 Rhabdovirus Non-virion protein DUF3105 PF11303.8 gi|212223800|ref|YP_002307036.1| - 0.087 13.0 0.2 2.5 8.3 0.0 2.9 3 0 0 3 3 3 0 Protein of unknown function (DUF3105) AIRS_C PF02769.22 gi|212223801|ref|YP_002307037.1| - 1.9e-18 67.1 0.0 2.7e-18 66.6 0.0 1.2 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.24 gi|212223801|ref|YP_002307037.1| - 1.2e-14 54.8 0.0 3.7e-14 53.1 0.0 1.7 2 0 0 2 2 2 1 AIR synthase related protein, N-terminal domain QueC PF06508.13 gi|212223802|ref|YP_002307038.1| - 1.8e-08 34.1 0.0 4.8e-08 32.8 0.0 1.7 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC ThiI PF02568.14 gi|212223802|ref|YP_002307038.1| - 1.4e-06 28.1 0.0 6e-06 26.0 0.0 2.0 1 1 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) PAPS_reduct PF01507.19 gi|212223802|ref|YP_002307038.1| - 3.8e-06 27.1 0.0 7.7e-05 22.8 0.0 2.5 1 1 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family ATP_bind_3 PF01171.20 gi|212223802|ref|YP_002307038.1| - 2.8e-05 23.9 0.0 0.00013 21.8 0.0 1.9 1 1 0 1 1 1 1 PP-loop family tRNA_Me_trans PF03054.16 gi|212223802|ref|YP_002307038.1| - 7.1e-05 21.8 0.0 0.00013 20.9 0.0 1.6 1 0 0 1 1 1 1 tRNA methyl transferase NAD_synthase PF02540.17 gi|212223802|ref|YP_002307038.1| - 0.00044 19.5 0.0 0.0013 17.9 0.0 1.7 2 0 0 2 2 2 1 NAD synthase Diphthami_syn_2 PF01902.17 gi|212223802|ref|YP_002307038.1| - 0.0095 15.5 0.0 0.018 14.6 0.0 1.4 1 0 0 1 1 1 1 Diphthamide synthase Asn_synthase PF00733.21 gi|212223802|ref|YP_002307038.1| - 0.14 11.8 0.0 0.34 10.5 0.0 1.5 1 0 0 1 1 1 0 Asparagine synthase YjeF_N PF03853.15 gi|212223802|ref|YP_002307038.1| - 0.21 11.4 0.0 0.36 10.7 0.0 1.4 1 0 0 1 1 1 0 YjeF-related protein N-terminus DUF4870 PF09685.10 gi|212223803|ref|YP_002307039.1| - 2.2e-11 43.8 7.9 2.7e-11 43.5 7.9 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4870) TIC20 PF16166.5 gi|212223803|ref|YP_002307039.1| - 0.0031 17.3 2.8 0.0041 16.9 2.8 1.2 1 0 0 1 1 1 1 Chloroplast import apparatus Tic20-like FA_desaturase PF00487.24 gi|212223803|ref|YP_002307039.1| - 0.12 12.2 3.5 0.15 11.9 3.5 1.1 1 0 0 1 1 1 0 Fatty acid desaturase DUF4579 PF15158.6 gi|212223803|ref|YP_002307039.1| - 1 9.1 3.6 16 5.2 0.6 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4579) FeoA PF04023.14 gi|212223804|ref|YP_002307040.1| - 4e-16 59.0 0.2 4.4e-16 58.9 0.2 1.0 1 0 0 1 1 1 1 FeoA domain FeoB_N PF02421.18 gi|212223805|ref|YP_002307041.1| - 3.8e-64 214.9 0.9 6.1e-64 214.3 0.9 1.3 1 0 0 1 1 1 1 Ferrous iron transport protein B Gate PF07670.14 gi|212223805|ref|YP_002307041.1| - 8.2e-41 138.8 18.2 7.7e-29 100.2 2.1 3.1 3 0 0 3 3 3 2 Nucleoside recognition MMR_HSR1 PF01926.23 gi|212223805|ref|YP_002307041.1| - 1.5e-20 73.4 0.7 2.6e-20 72.6 0.1 1.7 2 0 0 2 2 2 1 50S ribosome-binding GTPase FeoB_C PF07664.12 gi|212223805|ref|YP_002307041.1| - 4.7e-19 67.8 0.9 4.7e-19 67.8 0.9 3.1 3 0 0 3 3 3 1 Ferrous iron transport protein B C terminus FeoB_Cyto PF17910.1 gi|212223805|ref|YP_002307041.1| - 4.1e-17 62.5 1.2 7.9e-17 61.6 1.2 1.5 1 0 0 1 1 1 1 FeoB cytosolic helical domain SRPRB PF09439.10 gi|212223805|ref|YP_002307041.1| - 6.7e-07 28.9 0.2 4.4e-06 26.2 0.1 2.0 2 0 0 2 2 2 1 Signal recognition particle receptor beta subunit RsgA_GTPase PF03193.16 gi|212223805|ref|YP_002307041.1| - 1.4e-05 25.0 1.0 0.0073 16.2 0.2 2.4 2 0 0 2 2 2 2 RsgA GTPase PduV-EutP PF10662.9 gi|212223805|ref|YP_002307041.1| - 7.3e-05 22.5 0.1 0.00061 19.6 0.1 2.4 2 1 0 2 2 2 1 Ethanolamine utilisation - propanediol utilisation ATP_bind_1 PF03029.17 gi|212223805|ref|YP_002307041.1| - 0.00073 19.4 0.3 0.0055 16.5 0.4 2.0 1 1 0 1 1 1 1 Conserved hypothetical ATP binding protein MMR_HSR1_Xtn PF16897.5 gi|212223805|ref|YP_002307041.1| - 0.0025 17.8 0.2 0.0095 15.9 0.0 2.0 2 0 0 2 2 2 1 C-terminal region of MMR_HSR1 domain AAA_28 PF13521.6 gi|212223805|ref|YP_002307041.1| - 0.059 13.6 0.1 2.6 8.3 0.0 2.4 2 0 0 2 2 2 0 AAA domain AAA_18 PF13238.6 gi|212223805|ref|YP_002307041.1| - 0.12 13.0 0.0 0.59 10.7 0.0 2.2 2 0 0 2 2 2 0 AAA domain Borrelia_orfA PF02414.15 gi|212223805|ref|YP_002307041.1| - 0.14 11.8 0.1 0.24 11.0 0.1 1.3 1 0 0 1 1 1 0 Borrelia ORF-A cobW PF02492.19 gi|212223805|ref|YP_002307041.1| - 0.82 9.2 2.7 5.5 6.5 0.5 2.3 1 1 1 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain TrmB PF01978.19 gi|212223806|ref|YP_002307042.1| - 6.2e-05 22.8 0.0 7.9e-05 22.5 0.0 1.1 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB DUF4423 PF14394.6 gi|212223806|ref|YP_002307042.1| - 0.00022 21.0 0.1 0.00025 20.8 0.1 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4423) HTH_IclR PF09339.10 gi|212223806|ref|YP_002307042.1| - 0.00031 20.5 0.0 0.00044 20.0 0.0 1.2 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_20 PF12840.7 gi|212223806|ref|YP_002307042.1| - 0.00033 20.7 0.2 0.00042 20.3 0.2 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain DUF433 PF04255.14 gi|212223806|ref|YP_002307042.1| - 0.0005 19.9 0.1 0.00074 19.3 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF433) DUF2802 PF10975.8 gi|212223806|ref|YP_002307042.1| - 0.00054 20.0 0.2 0.00084 19.4 0.2 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF2802) FeoC PF09012.10 gi|212223806|ref|YP_002307042.1| - 0.0013 18.8 0.1 0.0016 18.4 0.1 1.3 1 0 0 1 1 1 1 FeoC like transcriptional regulator DprA_WH PF17782.1 gi|212223806|ref|YP_002307042.1| - 0.0014 18.7 0.6 0.0022 18.1 0.6 1.3 1 0 0 1 1 1 1 DprA winged helix domain MarR_2 PF12802.7 gi|212223806|ref|YP_002307042.1| - 0.0035 17.2 0.1 0.0046 16.8 0.1 1.2 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.12 gi|212223806|ref|YP_002307042.1| - 0.004 17.1 0.3 0.0056 16.6 0.3 1.2 1 0 0 1 1 1 1 HTH domain Sigma70_r4 PF04545.16 gi|212223806|ref|YP_002307042.1| - 0.0042 16.6 0.2 0.0071 15.9 0.2 1.3 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_38 PF13936.6 gi|212223806|ref|YP_002307042.1| - 0.0049 16.6 0.1 0.0079 15.9 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_36 PF13730.6 gi|212223806|ref|YP_002307042.1| - 0.0074 16.2 0.0 0.011 15.7 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain DUF2250 PF10007.9 gi|212223806|ref|YP_002307042.1| - 0.0079 16.3 0.1 0.0096 16.0 0.1 1.2 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) RPA_C PF08784.11 gi|212223806|ref|YP_002307042.1| - 0.0079 16.8 0.0 0.011 16.4 0.0 1.2 1 0 0 1 1 1 1 Replication protein A C terminal HTH_28 PF13518.6 gi|212223806|ref|YP_002307042.1| - 0.014 15.5 0.0 0.02 15.0 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_40 PF14493.6 gi|212223806|ref|YP_002307042.1| - 0.015 15.7 0.0 0.016 15.6 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain GerE PF00196.19 gi|212223806|ref|YP_002307042.1| - 0.021 14.4 0.0 0.029 13.9 0.0 1.2 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family LexA_DNA_bind PF01726.16 gi|212223806|ref|YP_002307042.1| - 0.029 14.1 0.1 0.06 13.1 0.1 1.6 1 1 0 1 1 1 0 LexA DNA binding domain MarR PF01047.22 gi|212223806|ref|YP_002307042.1| - 0.03 14.2 0.1 0.041 13.8 0.1 1.2 1 0 0 1 1 1 0 MarR family HTH_24 PF13412.6 gi|212223806|ref|YP_002307042.1| - 0.033 13.8 0.7 0.066 12.8 0.7 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_Crp_2 PF13545.6 gi|212223806|ref|YP_002307042.1| - 0.04 13.9 0.1 0.053 13.5 0.1 1.2 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain PheRS_DBD1 PF18552.1 gi|212223806|ref|YP_002307042.1| - 0.062 13.1 0.1 0.081 12.7 0.1 1.2 1 0 0 1 1 1 0 PheRS DNA binding domain 1 Sigma70_r4_2 PF08281.12 gi|212223806|ref|YP_002307042.1| - 0.079 12.7 0.1 0.12 12.1 0.1 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_23 PF13384.6 gi|212223806|ref|YP_002307042.1| - 0.092 12.6 0.0 0.14 12.0 0.0 1.3 1 0 0 1 1 1 0 Homeodomain-like domain Sigma70_r3 PF04539.16 gi|212223806|ref|YP_002307042.1| - 0.1 12.7 0.2 0.17 12.0 0.2 1.3 1 1 0 1 1 1 0 Sigma-70 region 3 Rrf2 PF02082.20 gi|212223806|ref|YP_002307042.1| - 0.14 12.5 0.0 0.18 12.2 0.0 1.2 1 0 0 1 1 1 0 Transcriptional regulator NTP_transferase PF00483.23 gi|212223807|ref|YP_002307043.1| - 1.4e-47 162.4 0.0 1.9e-47 162.0 0.0 1.2 1 0 0 1 1 1 1 Nucleotidyl transferase Hexapep PF00132.24 gi|212223807|ref|YP_002307043.1| - 5.2e-11 41.8 2.7 0.00028 20.5 0.1 3.4 2 1 2 4 4 4 4 Bacterial transferase hexapeptide (six repeats) NTP_transf_3 PF12804.7 gi|212223807|ref|YP_002307043.1| - 8.1e-11 42.5 0.0 1.2e-10 41.9 0.0 1.3 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.19 gi|212223807|ref|YP_002307043.1| - 0.024 14.4 0.0 0.041 13.6 0.0 1.3 1 0 0 1 1 1 0 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase DisA_N PF02457.16 gi|212223808|ref|YP_002307044.1| - 3.5e-21 75.0 0.0 7.4e-21 73.9 0.0 1.6 1 0 0 1 1 1 1 DisA bacterial checkpoint controller nucleotide-binding Flavoprotein PF02441.19 gi|212223809|ref|YP_002307045.1| - 2.7e-30 105.2 0.1 3.7e-30 104.8 0.1 1.1 1 0 0 1 1 1 1 Flavoprotein HTH_24 PF13412.6 gi|212223810|ref|YP_002307046.1| - 1.6e-14 53.1 2.5 2.8e-14 52.4 2.5 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|212223810|ref|YP_002307046.1| - 6.2e-13 48.4 2.1 9.3e-13 47.8 2.1 1.3 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_20 PF12840.7 gi|212223810|ref|YP_002307046.1| - 5.5e-08 32.7 0.0 9.2e-08 32.0 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.12 gi|212223810|ref|YP_002307046.1| - 3.1e-06 27.0 1.1 6.5e-06 26.0 1.1 1.6 1 0 0 1 1 1 1 HTH domain HTH_IclR PF09339.10 gi|212223810|ref|YP_002307046.1| - 4.9e-05 23.0 0.0 9.6e-05 22.1 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain Sigma70_r4 PF04545.16 gi|212223810|ref|YP_002307046.1| - 6.1e-05 22.5 0.5 0.00018 21.0 0.3 1.9 2 1 0 2 2 2 1 Sigma-70, region 4 MarR PF01047.22 gi|212223810|ref|YP_002307046.1| - 8.3e-05 22.4 0.3 0.00015 21.6 0.3 1.4 1 0 0 1 1 1 1 MarR family HTH_38 PF13936.6 gi|212223810|ref|YP_002307046.1| - 0.00012 21.7 0.8 0.0005 19.8 0.1 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|212223810|ref|YP_002307046.1| - 0.00014 21.6 0.0 0.00025 20.9 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.6 gi|212223810|ref|YP_002307046.1| - 0.00016 22.1 0.1 0.00029 21.3 0.1 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_23 PF13384.6 gi|212223810|ref|YP_002307046.1| - 0.00038 20.2 0.1 0.00073 19.3 0.1 1.4 1 0 0 1 1 1 1 Homeodomain-like domain HTH_5 PF01022.20 gi|212223810|ref|YP_002307046.1| - 0.00053 19.8 0.0 0.00099 18.9 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family TrmB PF01978.19 gi|212223810|ref|YP_002307046.1| - 0.0012 18.7 0.0 0.0019 18.0 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_Mga PF08280.11 gi|212223810|ref|YP_002307046.1| - 0.003 17.5 0.5 0.007 16.4 0.2 1.7 2 0 0 2 2 1 1 M protein trans-acting positive regulator (MGA) HTH domain Penicillinase_R PF03965.16 gi|212223810|ref|YP_002307046.1| - 0.004 17.5 0.0 0.0069 16.7 0.0 1.4 1 0 0 1 1 1 1 Penicillinase repressor Sigma70_r4_2 PF08281.12 gi|212223810|ref|YP_002307046.1| - 0.0055 16.3 0.0 0.016 14.9 0.0 1.8 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_Tnp_Tc3_1 PF11427.8 gi|212223810|ref|YP_002307046.1| - 0.016 15.1 0.1 0.036 13.9 0.1 1.6 1 0 0 1 1 1 0 Tc3 transposase RuvB_C PF05491.13 gi|212223810|ref|YP_002307046.1| - 0.02 14.8 0.7 0.11 12.4 0.1 2.2 1 1 1 2 2 2 0 RuvB C-terminal winged helix domain Rrf2 PF02082.20 gi|212223810|ref|YP_002307046.1| - 0.049 14.0 0.2 0.4 11.1 0.1 2.2 1 1 1 2 2 2 0 Transcriptional regulator AsnC_trans_reg PF01037.21 gi|212223810|ref|YP_002307046.1| - 0.052 13.5 0.0 0.11 12.4 0.0 1.6 1 0 0 1 1 1 0 Lrp/AsnC ligand binding domain Fe_dep_repress PF01325.19 gi|212223810|ref|YP_002307046.1| - 0.058 13.6 0.0 0.14 12.3 0.0 1.6 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_Crp_2 PF13545.6 gi|212223810|ref|YP_002307046.1| - 0.062 13.3 0.3 0.12 12.3 0.3 1.5 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain GerE PF00196.19 gi|212223810|ref|YP_002307046.1| - 0.084 12.4 0.0 0.13 11.8 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family HTH_DeoR PF08220.12 gi|212223810|ref|YP_002307046.1| - 0.088 12.6 0.3 0.16 11.7 0.3 1.4 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain HTH_31 PF13560.6 gi|212223810|ref|YP_002307046.1| - 0.09 13.1 0.0 0.16 12.3 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain AAA_25 PF13481.6 gi|212223810|ref|YP_002307046.1| - 0.11 12.1 0.0 0.17 11.4 0.0 1.2 1 0 0 1 1 1 0 AAA domain HTH_12 PF08461.10 gi|212223810|ref|YP_002307046.1| - 0.19 11.7 1.7 0.45 10.5 1.7 1.6 1 0 0 1 1 1 0 Ribonuclease R winged-helix domain CYTH PF01928.21 gi|212223811|ref|YP_002307047.1| - 4.1e-24 85.5 3.9 4.6e-24 85.3 3.9 1.0 1 0 0 1 1 1 1 CYTH domain Filamin PF00630.19 gi|212223812|ref|YP_002307048.1| - 0.054 14.3 0.0 0.079 13.8 0.0 1.3 1 0 0 1 1 1 0 Filamin/ABP280 repeat Glyco_hydro_114 PF03537.13 gi|212223813|ref|YP_002307049.1| - 2.5e-18 66.2 0.0 3e-18 66.0 0.0 1.1 1 0 0 1 1 1 1 Glycoside-hydrolase family GH114 Spherulin4 PF12138.8 gi|212223813|ref|YP_002307049.1| - 0.013 15.1 0.0 0.018 14.7 0.0 1.2 1 0 0 1 1 1 0 Spherulation-specific family 4 GHL15 PF14885.6 gi|212223813|ref|YP_002307049.1| - 0.1 12.6 0.0 0.13 12.2 0.0 1.3 1 0 0 1 1 1 0 Hypothetical glycosyl hydrolase family 15 MMR_HSR1_C PF08438.10 gi|212223814|ref|YP_002307050.1| - 1.3e-36 125.6 0.0 2.2e-36 124.9 0.0 1.4 1 0 0 1 1 1 1 GTPase of unknown function C-terminal MMR_HSR1 PF01926.23 gi|212223814|ref|YP_002307050.1| - 1.9e-20 73.0 0.0 1.1e-19 70.6 0.0 2.1 2 0 0 2 2 2 1 50S ribosome-binding GTPase TGS PF02824.21 gi|212223814|ref|YP_002307050.1| - 3.8e-13 49.3 0.0 8.2e-13 48.2 0.0 1.6 1 0 0 1 1 1 1 TGS domain FeoB_N PF02421.18 gi|212223814|ref|YP_002307050.1| - 1.2e-10 41.1 0.2 2.5e-07 30.4 0.1 2.4 2 0 0 2 2 2 2 Ferrous iron transport protein B MMR_HSR1_Xtn PF16897.5 gi|212223814|ref|YP_002307050.1| - 0.012 15.6 0.0 0.063 13.3 0.0 2.0 2 0 0 2 2 2 0 C-terminal region of MMR_HSR1 domain GTP_EFTU PF00009.27 gi|212223814|ref|YP_002307050.1| - 0.11 12.1 0.1 1.8 8.0 0.0 2.5 2 0 0 2 2 2 0 Elongation factor Tu GTP binding domain RsgA_GTPase PF03193.16 gi|212223814|ref|YP_002307050.1| - 0.17 11.8 0.1 0.7 9.8 0.0 1.9 2 0 0 2 2 2 0 RsgA GTPase CorA PF01544.18 gi|212223816|ref|YP_002307052.1| - 2e-08 33.9 1.1 2.1e-08 33.8 1.1 1.0 1 0 0 1 1 1 1 CorA-like Mg2+ transporter protein Gram_pos_anchor PF00746.21 gi|212223816|ref|YP_002307052.1| - 0.066 13.2 0.3 0.079 12.9 0.3 1.1 1 0 0 1 1 1 0 LPXTG cell wall anchor motif Asp_Glu_race PF01177.22 gi|212223817|ref|YP_002307053.1| - 2.4e-62 210.7 0.0 2.7e-62 210.5 0.0 1.0 1 0 0 1 1 1 1 Asp/Glu/Hydantoin racemase Pantoate_transf PF02548.15 gi|212223817|ref|YP_002307053.1| - 0.088 12.2 0.0 0.15 11.5 0.0 1.3 1 0 0 1 1 1 0 Ketopantoate hydroxymethyltransferase Cupin_2 PF07883.11 gi|212223818|ref|YP_002307054.1| - 4.3e-19 68.0 0.0 5.4e-19 67.7 0.0 1.1 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.19 gi|212223818|ref|YP_002307054.1| - 2.3e-12 47.0 0.0 3.1e-12 46.6 0.0 1.1 1 0 0 1 1 1 1 AraC-like ligand binding domain Cupin_1 PF00190.22 gi|212223818|ref|YP_002307054.1| - 3.1e-07 30.1 0.0 6.1e-07 29.2 0.0 1.4 1 1 0 1 1 1 1 Cupin CENP-C_C PF11699.8 gi|212223818|ref|YP_002307054.1| - 1e-06 28.8 0.0 1.3e-06 28.5 0.0 1.1 1 0 0 1 1 1 1 Mif2/CENP-C like MannoseP_isomer PF01050.18 gi|212223818|ref|YP_002307054.1| - 8.4e-06 25.7 0.0 8.8e-06 25.7 0.0 1.1 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase Cupin_3 PF05899.12 gi|212223818|ref|YP_002307054.1| - 0.00036 20.1 0.0 0.00054 19.6 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF861) Asp_Arg_Hydrox PF05118.15 gi|212223818|ref|YP_002307054.1| - 0.0059 16.4 0.0 0.0075 16.1 0.0 1.1 1 0 0 1 1 1 1 Aspartyl/Asparaginyl beta-hydroxylase AraC_binding_2 PF14525.6 gi|212223818|ref|YP_002307054.1| - 0.0069 16.1 0.0 0.0069 16.1 0.0 1.1 1 0 0 1 1 1 1 AraC-binding-like domain Cupin_7 PF12973.7 gi|212223818|ref|YP_002307054.1| - 0.05 13.5 0.0 0.058 13.3 0.0 1.2 1 0 0 1 1 1 0 ChrR Cupin-like domain PmbA_TldD PF01523.16 gi|212223819|ref|YP_002307055.1| - 8.8e-45 153.7 0.0 1.4e-44 153.0 0.0 1.3 1 0 0 1 1 1 1 Putative modulator of DNA gyrase PmbA_TldD PF01523.16 gi|212223820|ref|YP_002307056.1| - 6.3e-46 157.5 0.0 1.1e-45 156.7 0.0 1.4 2 0 0 2 2 2 1 Putative modulator of DNA gyrase Met_10 PF02475.16 gi|212223821|ref|YP_002307057.1| - 1.5e-68 230.5 0.0 1.9e-68 230.1 0.0 1.1 1 0 0 1 1 1 1 Met-10+ like-protein Trm5_N PF18093.1 gi|212223821|ref|YP_002307057.1| - 1.7e-16 59.9 0.0 3.6e-16 58.8 0.0 1.6 1 0 0 1 1 1 1 tRNA methyltransferase 5 N-terminal domain PrmA PF06325.13 gi|212223821|ref|YP_002307057.1| - 4.4e-06 26.3 0.0 7.2e-06 25.6 0.0 1.3 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) MTS PF05175.14 gi|212223821|ref|YP_002307057.1| - 0.00047 19.8 0.0 0.00077 19.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain TRM PF02005.16 gi|212223821|ref|YP_002307057.1| - 0.0028 16.9 0.0 0.0036 16.5 0.0 1.2 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase Methyltransf_15 PF09445.10 gi|212223821|ref|YP_002307057.1| - 0.0039 16.8 0.0 0.0058 16.2 0.0 1.3 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltr_RsmB-F PF01189.17 gi|212223821|ref|YP_002307057.1| - 0.0088 15.7 0.0 0.017 14.8 0.0 1.5 1 0 0 1 1 1 1 16S rRNA methyltransferase RsmB/F DNA_methylase PF00145.17 gi|212223821|ref|YP_002307057.1| - 0.022 14.1 0.0 0.036 13.4 0.0 1.3 1 0 0 1 1 1 0 C-5 cytosine-specific DNA methylase Cons_hypoth95 PF03602.15 gi|212223821|ref|YP_002307057.1| - 0.045 13.4 0.0 0.062 12.9 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical protein 95 Methyltransf_31 PF13847.6 gi|212223821|ref|YP_002307057.1| - 0.095 12.5 0.0 0.27 11.0 0.0 1.7 2 0 0 2 2 2 0 Methyltransferase domain ATPase PF06745.13 gi|212223822|ref|YP_002307058.1| - 0.00013 21.4 0.0 0.00017 21.0 0.0 1.3 1 0 0 1 1 1 1 KaiC Nuc_rec_co-act PF08815.10 gi|212223822|ref|YP_002307058.1| - 0.56 10.1 2.0 16 5.4 0.1 2.7 3 0 0 3 3 3 0 Nuclear receptor coactivator RNA_Me_trans PF04252.13 gi|212223823|ref|YP_002307059.1| - 3.6e-05 23.4 0.0 7.4e-05 22.4 0.0 1.5 1 0 0 1 1 1 1 Predicted SAM-dependent RNA methyltransferase tRNA_m1G_MT PF01746.21 gi|212223823|ref|YP_002307059.1| - 0.054 13.2 0.0 0.16 11.6 0.0 1.9 1 0 0 1 1 1 0 tRNA (Guanine-1)-methyltransferase LpxI_N PF17930.1 gi|212223823|ref|YP_002307059.1| - 0.063 13.2 0.0 0.22 11.4 0.0 1.9 2 0 0 2 2 2 0 LpxI N-terminal domain Rubrerythrin PF02915.17 gi|212223824|ref|YP_002307060.1| - 1.6e-21 77.1 4.3 3.2e-21 76.1 4.3 1.5 1 0 0 1 1 1 1 Rubrerythrin Ferritin_2 PF13668.6 gi|212223824|ref|YP_002307060.1| - 0.0062 16.7 0.1 0.23 11.7 0.0 2.3 1 1 1 2 2 2 2 Ferritin-like domain 2-ph_phosp PF04029.14 gi|212223824|ref|YP_002307060.1| - 0.17 11.0 0.1 0.35 10.0 0.0 1.5 2 0 0 2 2 2 0 2-phosphosulpholactate phosphatase tRNA-synt_1 PF00133.22 gi|212223825|ref|YP_002307061.1| - 9.1e-145 483.3 1.0 1.2e-143 479.6 1.0 2.0 1 1 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.13 gi|212223825|ref|YP_002307061.1| - 1.2e-37 129.2 0.3 1.2e-37 129.2 0.3 1.8 2 0 0 2 2 2 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.11 gi|212223825|ref|YP_002307061.1| - 7.9e-25 87.4 4.8 1e-15 57.4 0.0 3.7 4 0 0 4 4 4 3 tRNA synthetases class I (M) tRNA-synt_1e PF01406.19 gi|212223825|ref|YP_002307061.1| - 6.5e-06 25.7 0.0 0.08 12.3 0.0 2.4 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1_2 PF13603.6 gi|212223825|ref|YP_002307061.1| - 3.9e-05 23.3 0.0 9e-05 22.1 0.0 1.5 1 0 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 zf-TFIIB PF13453.6 gi|212223825|ref|YP_002307061.1| - 0.006 15.9 0.6 3 7.2 0.0 2.5 2 0 0 2 2 2 2 Transcription factor zinc-finger DUF2250 PF10007.9 gi|212223825|ref|YP_002307061.1| - 0.028 14.5 0.4 11 6.2 0.1 2.6 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) zf-FPG_IleRS PF06827.14 gi|212223825|ref|YP_002307061.1| - 0.058 13.3 2.6 6.2 6.8 0.2 2.5 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS zinc_ribbon_2 PF13240.6 gi|212223825|ref|YP_002307061.1| - 0.099 12.4 0.4 2.1 8.2 0.0 2.4 2 0 0 2 2 2 0 zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|212223825|ref|YP_002307061.1| - 0.28 11.3 1.6 3.6 7.8 0.5 2.4 2 0 0 2 2 2 0 Zinc ribbon domain DNA_ligase_ZBD PF03119.16 gi|212223825|ref|YP_002307061.1| - 0.44 10.6 3.5 1.9 8.6 0.6 2.9 3 0 0 3 3 3 0 NAD-dependent DNA ligase C4 zinc finger domain Methyltransf_25 PF13649.6 gi|212223826|ref|YP_002307062.1| - 2.1e-21 76.4 0.2 6.6e-21 74.8 0.0 1.9 2 1 0 2 2 2 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|212223826|ref|YP_002307062.1| - 2.7e-16 60.0 0.1 6.9e-16 58.7 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|212223826|ref|YP_002307062.1| - 9.1e-16 58.0 0.0 1.3e-15 57.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|212223826|ref|YP_002307062.1| - 1.6e-12 47.2 0.0 2.4e-12 46.7 0.0 1.3 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.12 gi|212223826|ref|YP_002307062.1| - 5.7e-10 39.8 0.0 1.2e-09 38.8 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|212223826|ref|YP_002307062.1| - 5.2e-08 32.9 0.1 1e-07 32.0 0.1 1.6 1 1 0 1 1 1 1 Methyltransferase domain CMAS PF02353.20 gi|212223826|ref|YP_002307062.1| - 3.3e-07 29.9 0.0 9.1e-07 28.4 0.0 1.7 1 1 0 1 1 1 1 Mycolic acid cyclopropane synthetase TehB PF03848.14 gi|212223826|ref|YP_002307062.1| - 8.9e-07 28.5 0.0 1.7e-06 27.6 0.0 1.4 1 1 0 1 1 1 1 Tellurite resistance protein TehB MTS PF05175.14 gi|212223826|ref|YP_002307062.1| - 4.9e-06 26.2 0.0 8.5e-06 25.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain NodS PF05401.11 gi|212223826|ref|YP_002307062.1| - 0.00018 21.2 0.0 0.00044 19.9 0.0 1.6 2 0 0 2 2 2 1 Nodulation protein S (NodS) Methyltransf_32 PF13679.6 gi|212223826|ref|YP_002307062.1| - 0.0024 17.9 0.0 0.0037 17.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain CheR PF01739.18 gi|212223826|ref|YP_002307062.1| - 0.0029 17.1 0.1 0.73 9.3 0.1 2.8 1 1 1 2 2 2 1 CheR methyltransferase, SAM binding domain Methyltransf_2 PF00891.18 gi|212223826|ref|YP_002307062.1| - 0.0092 15.3 0.0 0.02 14.2 0.0 1.3 1 1 0 1 1 1 1 O-methyltransferase domain PrmA PF06325.13 gi|212223826|ref|YP_002307062.1| - 0.0098 15.3 0.0 0.018 14.4 0.0 1.4 1 1 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) RrnaAD PF00398.20 gi|212223826|ref|YP_002307062.1| - 0.012 14.7 0.0 0.019 14.0 0.0 1.3 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase UPF0020 PF01170.18 gi|212223826|ref|YP_002307062.1| - 0.018 14.7 0.0 0.066 12.9 0.0 1.9 2 1 0 2 2 2 0 Putative RNA methylase family UPF0020 MethyltransfD12 PF02086.15 gi|212223826|ref|YP_002307062.1| - 0.02 14.6 0.0 0.027 14.2 0.0 1.2 1 0 0 1 1 1 0 D12 class N6 adenine-specific DNA methyltransferase Methyltransf_18 PF12847.7 gi|212223826|ref|YP_002307062.1| - 0.027 14.4 0.0 0.049 13.6 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_15 PF09445.10 gi|212223826|ref|YP_002307062.1| - 0.03 13.9 0.0 0.05 13.2 0.0 1.4 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase PCMT PF01135.19 gi|212223826|ref|YP_002307062.1| - 0.05 13.3 0.0 0.087 12.6 0.0 1.3 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Cons_hypoth95 PF03602.15 gi|212223826|ref|YP_002307062.1| - 0.07 12.8 0.0 0.1 12.2 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical protein 95 Aminotran_1_2 PF00155.21 gi|212223827|ref|YP_002307063.1| - 3.8e-37 128.3 0.0 4.8e-37 128.0 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class I and II CobD_Cbib PF03186.13 gi|212223828|ref|YP_002307064.1| - 8.7e-82 274.4 0.0 1.1e-81 274.1 0.0 1.1 1 0 0 1 1 1 1 CobD/Cbib protein DUF1340 PF07067.11 gi|212223828|ref|YP_002307064.1| - 0.05 13.0 0.0 0.07 12.5 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1340) DUF373 PF04123.13 gi|212223828|ref|YP_002307064.1| - 0.053 13.0 0.2 0.19 11.1 0.1 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF373) UDG PF03167.19 gi|212223829|ref|YP_002307065.1| - 1.1e-20 74.2 0.0 1.6e-20 73.7 0.0 1.2 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily HEM4 PF02602.15 gi|212223829|ref|YP_002307065.1| - 0.19 11.1 0.0 0.28 10.5 0.0 1.2 1 0 0 1 1 1 0 Uroporphyrinogen-III synthase HemD TF_Zn_Ribbon PF08271.12 gi|212223830|ref|YP_002307066.1| - 0.004 16.6 2.2 1.1 8.8 0.3 2.2 2 0 0 2 2 2 2 TFIIB zinc-binding zf-ISL3 PF14690.6 gi|212223830|ref|YP_002307066.1| - 0.01 16.5 0.1 1.7 9.4 0.0 2.2 2 0 0 2 2 2 1 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-C2H2_4 PF13894.6 gi|212223830|ref|YP_002307066.1| - 0.037 14.9 0.2 0.36 11.8 0.1 2.1 2 0 0 2 2 2 0 C2H2-type zinc finger A2L_zn_ribbon PF08792.10 gi|212223830|ref|YP_002307066.1| - 0.05 13.3 0.5 5.2 6.9 0.1 2.2 2 0 0 2 2 2 0 A2L zinc ribbon domain DUF3268 PF11672.8 gi|212223830|ref|YP_002307066.1| - 0.052 13.9 0.0 7.4 6.9 0.0 2.1 2 0 0 2 2 2 0 zinc-finger-containing domain zf-C2HC5 PF06221.13 gi|212223830|ref|YP_002307066.1| - 0.068 13.2 0.2 4 7.5 0.0 2.1 2 0 0 2 2 2 0 Putative zinc finger motif, C2HC5-type Lar_restr_allev PF14354.6 gi|212223830|ref|YP_002307066.1| - 0.12 12.8 1.9 0.37 11.2 1.9 1.8 1 1 0 1 1 1 0 Restriction alleviation protein Lar zf-UBP PF02148.19 gi|212223830|ref|YP_002307066.1| - 0.12 12.8 0.0 0.12 12.7 0.0 1.3 1 1 0 1 1 1 0 Zn-finger in ubiquitin-hydrolases and other protein SR1P PF13790.6 gi|212223830|ref|YP_002307066.1| - 0.18 11.9 0.9 0.31 11.2 0.0 1.7 2 0 0 2 2 2 0 SR1 protein Diphthami_syn_2 PF01902.17 gi|212223831|ref|YP_002307067.1| - 3.4e-34 118.3 0.0 3.8e-34 118.1 0.0 1.0 1 0 0 1 1 1 1 Diphthamide synthase PgpA PF04608.13 gi|212223832|ref|YP_002307068.1| - 2.6e-10 40.5 0.0 3.4e-10 40.1 0.0 1.1 1 0 0 1 1 1 1 Phosphatidylglycerophosphatase A CobS PF02654.15 gi|212223833|ref|YP_002307069.1| - 3.4e-39 135.2 10.2 4e-39 134.9 10.2 1.0 1 0 0 1 1 1 1 Cobalamin-5-phosphate synthase Glyco_hydro_114 PF03537.13 gi|212223834|ref|YP_002307070.1| - 4.8e-30 104.6 1.1 7.1e-30 104.0 1.1 1.2 1 0 0 1 1 1 1 Glycoside-hydrolase family GH114 NCOA_u2 PF16665.5 gi|212223834|ref|YP_002307070.1| - 0.38 11.1 3.8 0.6 10.4 3.8 1.3 1 0 0 1 1 1 0 Unstructured region on nuclear receptor coactivator protein NTP_transf_3 PF12804.7 gi|212223835|ref|YP_002307071.1| - 2.6e-15 57.1 0.0 3.1e-15 56.9 0.0 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain CTP_transf_3 PF02348.19 gi|212223835|ref|YP_002307071.1| - 0.0078 16.2 0.0 0.011 15.6 0.0 1.3 1 0 0 1 1 1 1 Cytidylyltransferase cIII PF08134.11 gi|212223835|ref|YP_002307071.1| - 0.14 11.9 0.5 0.25 11.1 0.5 1.4 1 0 0 1 1 1 0 cIII protein family GATase_3 PF07685.14 gi|212223836|ref|YP_002307072.1| - 3.4e-50 170.4 0.0 5e-50 169.8 0.0 1.3 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain CbiA PF01656.23 gi|212223836|ref|YP_002307072.1| - 2.4e-19 69.7 0.0 4.5e-19 68.8 0.0 1.4 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_26 PF13500.6 gi|212223836|ref|YP_002307072.1| - 3.2e-15 56.5 0.0 4.6e-14 52.7 0.0 2.1 1 1 0 1 1 1 1 AAA domain TMEM131_like PF12371.8 gi|212223836|ref|YP_002307072.1| - 0.067 13.4 0.0 0.13 12.5 0.0 1.4 1 0 0 1 1 1 0 Transmembrane protein 131-like GATase_5 PF13507.6 gi|212223836|ref|YP_002307072.1| - 0.099 11.7 0.0 0.17 11.0 0.0 1.3 1 0 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain Vault_4 PF17796.1 gi|212223836|ref|YP_002307072.1| - 0.12 12.5 0.1 0.54 10.4 0.1 2.1 2 0 0 2 2 2 0 Major Vault Protein repeat domain DBI_PRT PF02277.17 gi|212223837|ref|YP_002307073.1| - 2.5e-07 30.2 0.1 3.8e-07 29.7 0.1 1.2 1 0 0 1 1 1 1 Phosphoribosyltransferase CbiZ PF01955.18 gi|212223838|ref|YP_002307074.1| - 7.2e-46 156.7 0.4 8.1e-46 156.5 0.4 1.0 1 0 0 1 1 1 1 Adenosylcobinamide amidohydrolase MoCF_biosynth PF00994.24 gi|212223839|ref|YP_002307075.1| - 4.9e-37 126.8 0.9 5.5e-37 126.6 0.9 1.0 1 0 0 1 1 1 1 Probable molybdopterin binding domain DUF5321 PF17254.2 gi|212223839|ref|YP_002307075.1| - 0.14 11.6 0.1 0.23 10.9 0.1 1.4 1 0 0 1 1 1 0 Family of unknown function (DUF5321) Myosin_N PF02736.19 gi|212223839|ref|YP_002307075.1| - 0.14 12.0 1.9 0.33 10.8 0.7 2.1 2 0 0 2 2 2 0 Myosin N-terminal SH3-like domain MoeA_N PF03453.17 gi|212223840|ref|YP_002307076.1| - 8.8e-48 162.0 0.3 1.5e-47 161.3 0.3 1.4 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.24 gi|212223840|ref|YP_002307076.1| - 4.8e-19 68.4 0.0 1.2e-18 67.2 0.0 1.7 1 1 0 1 1 1 1 Probable molybdopterin binding domain MoeA_C PF03454.15 gi|212223840|ref|YP_002307076.1| - 3.4e-18 65.6 0.1 1.3e-17 63.8 0.0 2.1 2 0 0 2 2 2 1 MoeA C-terminal region (domain IV) SAF PF08666.12 gi|212223840|ref|YP_002307076.1| - 0.051 14.2 0.5 3.3 8.4 0.1 3.8 3 1 0 3 3 3 0 SAF domain YAcAr PF10686.9 gi|212223840|ref|YP_002307076.1| - 0.16 11.9 0.0 0.42 10.6 0.0 1.6 1 0 0 1 1 1 0 YspA, cpYpsA-related SLOG family DUF835 PF05763.12 gi|212223842|ref|YP_002307078.1| - 9.7e-29 99.8 0.2 1.7e-28 99.1 0.2 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF835) Keratin_assoc PF09775.9 gi|212223842|ref|YP_002307078.1| - 0.2 11.3 3.5 0.24 11.0 0.3 2.4 2 0 0 2 2 2 0 Keratinocyte-associated protein 2 DUF2070 PF09843.9 gi|212223842|ref|YP_002307078.1| - 8.5 4.5 17.2 13 4.0 17.2 1.2 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) AMP-binding PF00501.28 gi|212223844|ref|YP_002307080.1| - 3.4e-14 52.3 0.1 1.6e-13 50.0 0.0 1.9 2 0 0 2 2 2 1 AMP-binding enzyme GH3 PF03321.13 gi|212223844|ref|YP_002307080.1| - 2.6e-06 26.6 0.0 0.00011 21.2 0.0 2.1 2 0 0 2 2 2 2 GH3 auxin-responsive promoter DUF3225 PF11533.8 gi|212223844|ref|YP_002307080.1| - 0.025 14.3 0.1 3.9 7.2 0.1 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3225) HD PF01966.22 gi|212223845|ref|YP_002307081.1| - 1.3e-15 57.7 1.3 1.3e-15 57.7 1.3 2.4 2 1 0 2 2 2 1 HD domain HDOD PF08668.12 gi|212223845|ref|YP_002307081.1| - 0.023 14.1 0.0 0.049 13.1 0.0 1.5 1 0 0 1 1 1 0 HDOD domain HTH_3 PF01381.22 gi|212223846|ref|YP_002307082.1| - 7.9e-13 48.2 0.2 4.1e-12 46.0 0.1 2.3 2 0 0 2 2 2 1 Helix-turn-helix HTH_31 PF13560.6 gi|212223846|ref|YP_002307082.1| - 7.8e-10 39.0 0.1 1.8e-09 37.8 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_19 PF12844.7 gi|212223846|ref|YP_002307082.1| - 1.1e-06 28.5 0.1 4.6e-06 26.5 0.0 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_26 PF13443.6 gi|212223846|ref|YP_002307082.1| - 0.0027 18.1 0.0 0.0066 16.9 0.0 1.6 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain Hjc PF01870.18 gi|212223846|ref|YP_002307082.1| - 0.0079 16.2 0.2 0.077 13.0 0.1 2.6 3 0 0 3 3 3 1 Archaeal holliday junction resolvase (hjc) DUF848 PF05852.11 gi|212223846|ref|YP_002307082.1| - 0.014 15.5 1.9 0.014 15.5 1.9 1.7 2 0 0 2 2 2 0 Gammaherpesvirus protein of unknown function (DUF848) Gamma_PGA_hydro PF05908.11 gi|212223846|ref|YP_002307082.1| - 0.02 14.3 0.0 0.041 13.3 0.0 1.5 1 0 0 1 1 1 0 Poly-gamma-glutamate hydrolase HTH_23 PF13384.6 gi|212223846|ref|YP_002307082.1| - 0.024 14.4 0.0 0.11 12.4 0.0 2.1 2 0 0 2 2 2 0 Homeodomain-like domain HTH_11 PF08279.12 gi|212223846|ref|YP_002307082.1| - 0.057 13.4 0.0 0.22 11.5 0.0 2.0 1 0 0 1 1 1 0 HTH domain DUF4447 PF14590.6 gi|212223846|ref|YP_002307082.1| - 0.086 12.6 0.3 0.7 9.7 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4447) MerR PF00376.23 gi|212223846|ref|YP_002307082.1| - 0.098 12.4 0.0 0.32 10.8 0.0 1.9 2 0 0 2 2 2 0 MerR family regulatory protein HTH_24 PF13412.6 gi|212223846|ref|YP_002307082.1| - 0.11 12.1 0.0 0.23 11.0 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_17 PF12728.7 gi|212223846|ref|YP_002307082.1| - 0.11 12.6 0.2 2.1 8.6 0.0 2.7 3 0 0 3 3 3 0 Helix-turn-helix domain HTH_7 PF02796.15 gi|212223846|ref|YP_002307082.1| - 0.13 12.4 1.6 0.8 9.8 0.0 2.8 3 0 0 3 3 3 0 Helix-turn-helix domain of resolvase Acetyltransf_3 PF13302.7 gi|212223847|ref|YP_002307083.1| - 1.8e-28 99.9 0.3 2.4e-28 99.5 0.3 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|212223847|ref|YP_002307083.1| - 2.2e-15 56.9 1.1 2.7e-15 56.6 1.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_4 PF13420.7 gi|212223847|ref|YP_002307083.1| - 2.7e-12 47.1 0.1 3.5e-12 46.7 0.1 1.0 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.6 gi|212223847|ref|YP_002307083.1| - 1.3e-07 31.4 0.1 1.9e-07 30.9 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|212223847|ref|YP_002307083.1| - 0.012 15.6 0.0 0.016 15.1 0.0 1.1 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|212223847|ref|YP_002307083.1| - 0.05 13.6 0.1 0.12 12.4 0.1 1.7 1 1 0 1 1 1 0 FR47-like protein DUF1743 PF08489.11 gi|212223848|ref|YP_002307084.1| - 1.9e-38 131.1 0.0 3.7e-38 130.2 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF1743) tRNA_anti-codon PF01336.25 gi|212223848|ref|YP_002307084.1| - 1.2e-08 34.9 0.0 2.3e-08 33.9 0.0 1.5 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA_anti_2 PF13742.6 gi|212223848|ref|YP_002307084.1| - 3.2e-05 24.1 0.0 6.2e-05 23.1 0.0 1.4 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain Prok-RING_1 PF14446.6 gi|212223848|ref|YP_002307084.1| - 0.0066 16.3 1.3 0.011 15.6 1.3 1.3 1 0 0 1 1 1 1 Prokaryotic RING finger family 1 OrfB_Zn_ribbon PF07282.11 gi|212223848|ref|YP_002307084.1| - 0.037 14.0 1.9 0.07 13.1 1.9 1.4 1 0 0 1 1 1 0 Putative transposase DNA-binding domain zinc-ribbons_6 PF07191.12 gi|212223848|ref|YP_002307084.1| - 0.041 13.9 0.4 0.063 13.3 0.4 1.3 1 0 0 1 1 1 0 zinc-ribbons TF_Zn_Ribbon PF08271.12 gi|212223848|ref|YP_002307084.1| - 0.048 13.2 1.3 0.11 12.1 1.3 1.6 1 0 0 1 1 1 0 TFIIB zinc-binding DZR PF12773.7 gi|212223848|ref|YP_002307084.1| - 0.14 12.2 1.5 0.25 11.4 1.5 1.3 1 0 0 1 1 1 0 Double zinc ribbon TackOD1 PF18551.1 gi|212223848|ref|YP_002307084.1| - 0.16 11.7 0.3 0.25 11.0 0.3 1.2 1 0 0 1 1 1 0 Thaumarchaeal output domain 1 DNA_RNApol_7kD PF03604.13 gi|212223848|ref|YP_002307084.1| - 0.28 10.9 4.4 0.86 9.3 4.4 1.8 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit Zn_Tnp_IS1595 PF12760.7 gi|212223848|ref|YP_002307084.1| - 0.46 10.5 5.4 0.89 9.6 5.4 1.4 1 0 0 1 1 1 0 Transposase zinc-ribbon domain RNA_POL_M_15KD PF02150.16 gi|212223848|ref|YP_002307084.1| - 0.7 9.8 4.2 1.4 8.8 4.2 1.4 1 0 0 1 1 1 0 RNA polymerases M/15 Kd subunit zf_UBZ PF18439.1 gi|212223848|ref|YP_002307084.1| - 1.1 8.9 2.6 3.6 7.3 0.1 2.3 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger zf-FPG_IleRS PF06827.14 gi|212223848|ref|YP_002307084.1| - 2.1 8.3 5.2 13 5.7 0.8 2.4 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS Zn-ribbon_8 PF09723.10 gi|212223848|ref|YP_002307084.1| - 4.4 7.5 6.6 4.2 7.6 0.7 2.4 1 1 0 2 2 2 0 Zinc ribbon domain zinc_ribbon_4 PF13717.6 gi|212223848|ref|YP_002307084.1| - 4.5 7.3 7.3 1.7e+02 2.3 0.8 3.0 2 1 1 3 3 3 0 zinc-ribbon domain AAA_14 PF13173.6 gi|212223849|ref|YP_002307085.1| - 2.7e-21 76.0 0.0 5.5e-21 75.0 0.0 1.5 1 1 0 1 1 1 1 AAA domain RuvB_N PF05496.12 gi|212223849|ref|YP_002307085.1| - 5.1e-05 23.1 0.0 9.2e-05 22.2 0.0 1.3 1 0 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_22 PF13401.6 gi|212223849|ref|YP_002307085.1| - 0.0035 17.6 0.2 3.9 7.8 0.0 2.7 2 1 1 3 3 3 2 AAA domain AAA_16 PF13191.6 gi|212223849|ref|YP_002307085.1| - 0.0039 17.6 0.0 0.008 16.6 0.0 1.6 1 0 0 1 1 1 1 AAA ATPase domain TrmB PF01978.19 gi|212223849|ref|YP_002307085.1| - 0.0094 15.8 0.1 0.7 9.8 0.0 2.6 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB AAA PF00004.29 gi|212223849|ref|YP_002307085.1| - 0.015 15.8 0.0 0.027 14.9 0.0 1.4 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Rrf2 PF02082.20 gi|212223849|ref|YP_002307085.1| - 0.024 15.0 0.2 0.069 13.5 0.1 1.8 2 0 0 2 2 2 0 Transcriptional regulator MarR_2 PF12802.7 gi|212223849|ref|YP_002307085.1| - 0.046 13.6 0.0 0.096 12.6 0.0 1.5 1 0 0 1 1 1 0 MarR family HTH_36 PF13730.6 gi|212223849|ref|YP_002307085.1| - 0.051 13.5 0.0 0.17 11.8 0.0 1.9 1 0 0 1 1 1 0 Helix-turn-helix domain VirD1 PF07328.11 gi|212223849|ref|YP_002307085.1| - 0.087 12.8 0.0 0.23 11.4 0.0 1.7 1 1 0 1 1 1 0 T-DNA border endonuclease VirD1 NACHT PF05729.12 gi|212223849|ref|YP_002307085.1| - 0.14 12.1 0.0 0.24 11.3 0.0 1.4 1 0 0 1 1 1 0 NACHT domain DUF2075 PF09848.9 gi|212223849|ref|YP_002307085.1| - 0.24 10.6 0.0 0.36 10.0 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) DS PF01916.17 gi|212223850|ref|YP_002307086.1| - 4.8e-111 370.6 0.0 5.5e-111 370.4 0.0 1.0 1 0 0 1 1 1 1 Deoxyhypusine synthase Pyr_redox_2 PF07992.14 gi|212223851|ref|YP_002307087.1| - 1.2e-29 103.5 0.5 3.2e-29 102.1 0.5 1.6 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|212223851|ref|YP_002307087.1| - 1.2e-12 48.2 6.1 2.2e-07 31.3 1.0 3.3 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|212223851|ref|YP_002307087.1| - 2.6e-11 43.3 4.3 1.8e-07 30.7 0.1 3.0 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 gi|212223851|ref|YP_002307087.1| - 5.4e-07 29.5 13.2 0.028 14.0 1.5 3.9 2 2 2 4 4 4 3 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 gi|212223851|ref|YP_002307087.1| - 9.7e-07 28.9 0.5 9.7e-07 28.9 0.5 1.8 2 0 0 2 2 1 1 NAD(P)-binding Rossmann-like domain Shikimate_DH PF01488.20 gi|212223851|ref|YP_002307087.1| - 1.9e-06 28.0 0.1 0.59 10.2 0.0 4.1 4 0 0 4 4 4 1 Shikimate / quinate 5-dehydrogenase 2-Hacid_dh_C PF02826.19 gi|212223851|ref|YP_002307087.1| - 1.3e-05 24.6 0.7 0.074 12.4 0.1 3.1 3 0 0 3 3 3 2 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AlaDh_PNT_C PF01262.21 gi|212223851|ref|YP_002307087.1| - 1.6e-05 24.3 0.8 0.011 15.0 0.0 3.2 3 0 0 3 3 3 1 Alanine dehydrogenase/PNT, C-terminal domain HI0933_like PF03486.14 gi|212223851|ref|YP_002307087.1| - 5.5e-05 22.1 0.4 0.00032 19.5 0.6 2.1 2 0 0 2 2 2 1 HI0933-like protein FAD_binding_2 PF00890.24 gi|212223851|ref|YP_002307087.1| - 0.00016 20.9 1.4 0.00081 18.6 1.3 2.3 1 1 0 1 1 1 1 FAD binding domain FAD_binding_3 PF01494.19 gi|212223851|ref|YP_002307087.1| - 0.00023 20.5 0.2 0.00046 19.5 0.2 1.5 1 0 0 1 1 1 1 FAD binding domain Thi4 PF01946.17 gi|212223851|ref|YP_002307087.1| - 0.00026 20.3 0.0 0.00055 19.2 0.0 1.5 1 0 0 1 1 1 1 Thi4 family FAD_oxidored PF12831.7 gi|212223851|ref|YP_002307087.1| - 0.0023 17.3 0.7 0.08 12.3 0.1 2.1 2 0 0 2 2 2 1 FAD dependent oxidoreductase NAD_binding_9 PF13454.6 gi|212223851|ref|YP_002307087.1| - 0.015 15.3 4.8 0.027 14.4 0.2 3.0 3 1 1 4 4 4 0 FAD-NAD(P)-binding PALP PF00291.25 gi|212223851|ref|YP_002307087.1| - 0.016 14.6 0.0 3.6 6.9 0.0 2.3 2 0 0 2 2 2 0 Pyridoxal-phosphate dependent enzyme Amino_oxidase PF01593.24 gi|212223851|ref|YP_002307087.1| - 0.049 12.9 1.2 8.7 5.5 0.1 3.1 3 1 1 4 4 4 0 Flavin containing amine oxidoreductase 3HCDH_N PF02737.18 gi|212223851|ref|YP_002307087.1| - 0.056 13.3 0.5 0.056 13.3 0.5 1.9 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Glu_dehyd_C PF16912.5 gi|212223851|ref|YP_002307087.1| - 0.076 12.5 0.1 2.3 7.6 0.0 2.2 2 0 0 2 2 2 0 Glucose dehydrogenase C-terminus MCRA PF06100.11 gi|212223851|ref|YP_002307087.1| - 0.089 11.6 0.2 0.16 10.8 0.2 1.4 1 1 0 1 1 1 0 MCRA family ThiF PF00899.21 gi|212223851|ref|YP_002307087.1| - 0.12 11.7 0.1 17 4.7 0.0 2.8 3 0 0 3 3 3 0 ThiF family NAD_binding_2 PF03446.15 gi|212223851|ref|YP_002307087.1| - 0.13 12.4 0.5 0.44 10.7 0.1 2.1 2 1 1 3 3 2 0 NAD binding domain of 6-phosphogluconate dehydrogenase XdhC_C PF13478.6 gi|212223851|ref|YP_002307087.1| - 0.14 12.7 0.1 4.9 7.7 0.0 2.6 2 1 0 2 2 2 0 XdhC Rossmann domain GIDA PF01134.22 gi|212223851|ref|YP_002307087.1| - 3.9 6.5 8.3 0.13 11.3 1.2 2.1 2 1 1 3 3 3 0 Glucose inhibited division protein A adh_short_C2 PF13561.6 gi|212223852|ref|YP_002307088.1| - 7.7e-31 107.4 0.0 9.5e-31 107.1 0.0 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|212223852|ref|YP_002307088.1| - 1.9e-25 89.4 0.0 2.4e-25 89.1 0.0 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|212223852|ref|YP_002307088.1| - 0.0012 18.8 0.0 0.003 17.5 0.0 1.7 2 0 0 2 2 2 1 KR domain THF_DHG_CYH_C PF02882.19 gi|212223852|ref|YP_002307088.1| - 0.021 14.2 0.1 0.087 12.1 0.0 1.9 2 0 0 2 2 2 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain Amidohydro_1 PF01979.20 gi|212223853|ref|YP_002307089.1| - 3e-16 59.7 0.0 8.5e-13 48.3 0.0 2.2 2 0 0 2 2 2 2 Amidohydrolase family Amidohydro_3 PF07969.11 gi|212223853|ref|YP_002307089.1| - 4.9e-14 52.7 0.0 8.7e-10 38.6 0.0 2.9 3 0 0 3 3 3 2 Amidohydrolase family Radical_SAM PF04055.21 gi|212223853|ref|YP_002307089.1| - 0.13 12.7 0.0 0.24 11.8 0.0 1.5 1 0 0 1 1 1 0 Radical SAM superfamily Peptidase_M48 PF01435.18 gi|212223854|ref|YP_002307090.1| - 1.6e-37 129.2 0.0 2.4e-37 128.6 0.0 1.3 1 0 0 1 1 1 1 Peptidase family M48 Peptidase_M56 PF05569.11 gi|212223854|ref|YP_002307090.1| - 3.5e-05 23.1 0.1 8.7e-05 21.8 0.0 1.7 2 0 0 2 2 2 1 BlaR1 peptidase M56 Abhydrolase_9_N PF15420.6 gi|212223854|ref|YP_002307090.1| - 0.00091 19.3 4.9 0.11 12.4 0.3 2.2 2 0 0 2 2 2 2 Alpha/beta-hydrolase family N-terminus STIMATE PF12400.8 gi|212223854|ref|YP_002307090.1| - 0.014 15.9 0.9 0.031 14.8 0.9 1.6 1 0 0 1 1 1 0 STIMATE family DUF4129 PF13559.6 gi|212223854|ref|YP_002307090.1| - 0.39 11.0 3.1 4.1 7.7 0.3 3.6 3 1 1 4 4 4 0 Domain of unknown function (DUF4129) DUF4235 PF14019.6 gi|212223854|ref|YP_002307090.1| - 4.7 7.4 13.1 0.25 11.5 3.8 2.9 4 0 0 4 4 4 0 Protein of unknown function (DUF4235) DUF5518 PF17647.1 gi|212223854|ref|YP_002307090.1| - 5.4 7.2 15.8 2.2 8.5 2.8 2.4 2 0 0 2 2 2 0 Family of unknown function (DUF5518) Cpn60_TCP1 PF00118.24 gi|212223856|ref|YP_002307092.1| - 1e-182 608.2 24.8 1.2e-182 608.0 24.8 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family AAA_5 PF07728.14 gi|212223856|ref|YP_002307092.1| - 0.014 15.4 0.1 0.053 13.5 0.0 2.0 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) Synapsin_C PF02750.14 gi|212223856|ref|YP_002307092.1| - 0.017 14.7 0.2 0.031 13.8 0.2 1.4 1 0 0 1 1 1 0 Synapsin, ATP binding domain RVT_N PF13655.6 gi|212223856|ref|YP_002307092.1| - 0.1 12.9 0.8 3.3 8.0 0.1 2.6 2 0 0 2 2 2 0 N-terminal domain of reverse transcriptase TPP_enzyme_C PF02775.21 gi|212223856|ref|YP_002307092.1| - 0.11 12.2 1.3 2.3 8.0 0.1 2.9 2 2 0 2 2 2 0 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DUF2099 PF09872.9 gi|212223857|ref|YP_002307093.1| - 0.034 13.3 0.3 0.048 12.8 0.3 1.4 1 1 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2099) RIO1 PF01163.22 gi|212223858|ref|YP_002307094.1| - 5.1e-15 55.6 0.1 7.4e-15 55.0 0.1 1.2 1 0 0 1 1 1 1 RIO1 family Pkinase PF00069.25 gi|212223858|ref|YP_002307094.1| - 5.8e-13 48.8 0.1 7.3e-13 48.5 0.1 1.1 1 0 0 1 1 1 1 Protein kinase domain Kdo PF06293.14 gi|212223858|ref|YP_002307094.1| - 9.3e-12 44.7 0.1 1.4e-11 44.1 0.1 1.3 1 0 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family APH PF01636.23 gi|212223858|ref|YP_002307094.1| - 3.1e-11 43.7 0.3 7.7e-06 26.0 0.1 2.2 1 1 1 2 2 2 2 Phosphotransferase enzyme family Pkinase_Tyr PF07714.17 gi|212223858|ref|YP_002307094.1| - 7.8e-10 38.5 0.0 9.5e-10 38.2 0.0 1.1 1 0 0 1 1 1 1 Protein tyrosine kinase WaaY PF06176.11 gi|212223858|ref|YP_002307094.1| - 0.0013 18.3 0.1 0.0031 17.2 0.1 1.5 1 1 1 2 2 2 1 Lipopolysaccharide core biosynthesis protein (WaaY) EcKinase PF02958.20 gi|212223858|ref|YP_002307094.1| - 0.029 13.7 0.1 0.061 12.6 0.0 1.6 1 1 1 2 2 2 0 Ecdysteroid kinase Choline_kinase PF01633.20 gi|212223858|ref|YP_002307094.1| - 0.035 13.7 0.0 0.11 12.0 0.0 1.6 1 1 1 2 2 2 0 Choline/ethanolamine kinase Kinase-like PF14531.6 gi|212223858|ref|YP_002307094.1| - 0.043 13.1 0.0 0.066 12.5 0.0 1.3 1 0 0 1 1 1 0 Kinase-like MCPsignal PF00015.21 gi|212223859|ref|YP_002307095.1| - 9.8e-40 136.2 47.6 4.5e-38 130.8 17.7 4.1 1 1 2 3 3 3 2 Methyl-accepting chemotaxis protein (MCP) signalling domain Prominin PF05478.11 gi|212223859|ref|YP_002307095.1| - 2.6e-05 22.4 16.9 0.0047 15.0 4.1 2.1 2 0 0 2 2 2 2 Prominin IFT57 PF10498.9 gi|212223859|ref|YP_002307095.1| - 0.00035 19.7 11.2 0.00035 19.7 11.2 3.2 2 2 1 3 3 3 1 Intra-flagellar transport protein 57 DUF1664 PF07889.12 gi|212223859|ref|YP_002307095.1| - 0.00035 20.6 30.8 0.033 14.2 6.0 4.9 3 1 1 4 4 4 2 Protein of unknown function (DUF1664) PilJ PF13675.6 gi|212223859|ref|YP_002307095.1| - 0.00039 20.4 10.2 0.0021 18.1 0.1 4.0 2 2 3 5 5 5 1 Type IV pili methyl-accepting chemotaxis transducer N-term HAMP_N3 PF18575.1 gi|212223859|ref|YP_002307095.1| - 0.00063 19.3 2.0 0.0072 15.9 0.0 3.6 4 0 0 4 4 4 1 HAMP N-terminal domain 3 Laminin_II PF06009.12 gi|212223859|ref|YP_002307095.1| - 0.00094 19.2 36.2 0.41 10.7 2.7 5.4 2 2 2 5 5 5 4 Laminin Domain II HisKA_3 PF07730.13 gi|212223859|ref|YP_002307095.1| - 0.0055 17.2 18.4 0.34 11.5 1.0 5.6 3 1 3 6 6 6 2 Histidine kinase Nup88 PF10168.9 gi|212223859|ref|YP_002307095.1| - 0.025 12.4 19.9 0.003 15.5 6.9 2.2 2 0 0 2 2 2 0 Nuclear pore component SnoaL_3 PF13474.6 gi|212223859|ref|YP_002307095.1| - 0.04 14.2 4.3 1.5 9.1 0.3 3.0 3 0 0 3 3 3 0 SnoaL-like domain Serine_rich PF08824.10 gi|212223859|ref|YP_002307095.1| - 0.066 13.2 15.1 3.6 7.6 1.3 4.5 1 1 3 5 5 5 0 Serine rich protein interaction domain COG5 PF10392.9 gi|212223859|ref|YP_002307095.1| - 0.076 13.2 15.3 0.29 11.3 2.3 3.6 2 2 2 4 4 4 0 Golgi transport complex subunit 5 Goodbye PF17109.5 gi|212223859|ref|YP_002307095.1| - 0.086 13.3 14.5 0.65 10.4 0.1 4.9 2 2 2 5 5 5 0 fungal STAND N-terminal Goodbye domain DUF948 PF06103.11 gi|212223859|ref|YP_002307095.1| - 0.088 13.1 31.1 3.7 7.9 5.2 5.8 1 1 3 4 4 4 0 Bacterial protein of unknown function (DUF948) Rx_N PF18052.1 gi|212223859|ref|YP_002307095.1| - 0.12 12.7 21.2 0.94 9.8 3.0 4.6 1 1 0 4 4 4 0 Rx N-terminal domain DUF1043 PF06295.12 gi|212223859|ref|YP_002307095.1| - 0.12 12.4 12.6 9.5 6.2 1.5 4.2 2 1 1 3 3 3 0 Protein of unknown function (DUF1043) T7SS_ESX_EspC PF10824.8 gi|212223859|ref|YP_002307095.1| - 0.14 12.6 0.1 0.14 12.6 0.1 4.6 2 1 3 5 5 5 0 Excreted virulence factor EspC, type VII ESX diderm Baculo_PEP_C PF04513.12 gi|212223859|ref|YP_002307095.1| - 0.2 11.7 30.7 0.9 9.6 6.1 4.4 1 1 2 4 4 4 0 Baculovirus polyhedron envelope protein, PEP, C terminus COG2 PF06148.11 gi|212223859|ref|YP_002307095.1| - 0.2 11.7 30.3 0.039 14.0 6.3 5.4 3 2 1 4 4 4 0 COG (conserved oligomeric Golgi) complex component, COG2 GCP_C_terminal PF04130.13 gi|212223859|ref|YP_002307095.1| - 0.22 11.0 4.5 1.8 7.9 0.3 2.2 2 0 0 2 2 2 0 Gamma tubulin complex component C-terminal Pheromone PF08015.11 gi|212223859|ref|YP_002307095.1| - 0.22 12.6 0.2 0.56 11.3 0.2 1.6 1 0 0 1 1 1 0 Fungal mating-type pheromone WXG100 PF06013.12 gi|212223859|ref|YP_002307095.1| - 0.22 11.8 24.5 3.8 7.8 0.5 5.9 2 1 4 6 6 6 0 Proteins of 100 residues with WXG Syntaxin-6_N PF09177.11 gi|212223859|ref|YP_002307095.1| - 0.36 11.4 26.1 0.52 10.9 1.3 4.4 2 2 2 4 4 4 0 Syntaxin 6, N-terminal ABC_tran PF00005.27 gi|212223859|ref|YP_002307095.1| - 0.46 11.0 7.5 0.83 10.2 0.6 2.5 2 0 0 2 2 2 0 ABC transporter CNDH2_N PF06278.11 gi|212223859|ref|YP_002307095.1| - 0.63 10.3 6.3 0.079 13.2 1.0 2.3 2 1 1 3 3 2 0 Condensin II complex subunit CAP-H2 or CNDH2, N-terminal EzrA PF06160.12 gi|212223859|ref|YP_002307095.1| - 1.3 7.1 33.2 8.1 4.5 23.8 2.8 1 1 0 1 1 1 0 Septation ring formation regulator, EzrA BLOC1_2 PF10046.9 gi|212223859|ref|YP_002307095.1| - 1.5 9.2 36.1 2.2 8.6 0.7 5.7 1 1 5 7 7 7 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 ApoLp-III PF07464.11 gi|212223859|ref|YP_002307095.1| - 1.5 8.9 33.0 0.36 10.9 9.2 3.8 1 1 3 4 4 4 0 Apolipophorin-III precursor (apoLp-III) UPF0242 PF06785.11 gi|212223859|ref|YP_002307095.1| - 1.9 8.6 26.5 3.8 7.6 7.9 3.4 1 1 1 3 3 3 0 Uncharacterised protein family (UPF0242) N-terminus CENP-K PF11802.8 gi|212223859|ref|YP_002307095.1| - 2.1 7.9 20.7 4.5 6.8 5.3 2.5 2 1 0 2 2 2 0 Centromere-associated protein K HN PF00423.19 gi|212223859|ref|YP_002307095.1| - 2.4 6.8 12.2 0.5 9.1 4.4 2.1 2 0 0 2 2 2 0 Haemagglutinin-neuraminidase TetR_C_24 PF17932.1 gi|212223859|ref|YP_002307095.1| - 2.4 8.4 15.1 5.3 7.3 1.2 4.2 2 1 1 4 4 4 0 Tetracyclin repressor-like, C-terminal domain V-SNARE PF05008.15 gi|212223859|ref|YP_002307095.1| - 2.7 8.4 22.9 2.5 8.5 1.1 5.0 3 2 1 4 4 4 0 Vesicle transport v-SNARE protein N-terminus Laminin_I PF06008.14 gi|212223859|ref|YP_002307095.1| - 2.8 7.6 36.9 3.6 7.2 8.3 3.3 1 1 1 3 3 3 0 Laminin Domain I HAMP PF00672.25 gi|212223859|ref|YP_002307095.1| - 3 8.3 6.0 6.5 7.2 0.2 4.0 3 2 0 3 3 2 0 HAMP domain AvrM-A PF18241.1 gi|212223859|ref|YP_002307095.1| - 3 8.2 14.5 0.22 12.0 2.0 3.0 2 2 1 3 3 3 0 Flax-rust effector AvrM-A PTPA PF03095.15 gi|212223859|ref|YP_002307095.1| - 4.6 6.6 11.9 6.4 6.1 2.7 3.0 2 2 0 2 2 2 0 Phosphotyrosyl phosphate activator (PTPA) protein Complex1_49kDa PF00346.19 gi|212223859|ref|YP_002307095.1| - 5.9 5.9 20.0 0.36 9.9 0.4 3.9 1 1 4 5 5 5 0 Respiratory-chain NADH dehydrogenase, 49 Kd subunit LMBR1 PF04791.16 gi|212223859|ref|YP_002307095.1| - 6 5.6 15.8 0.96 8.3 3.0 2.1 1 1 0 2 2 2 0 LMBR1-like membrane protein Allexi_40kDa PF05549.11 gi|212223859|ref|YP_002307095.1| - 6.8 6.1 17.8 1.8 8.0 3.4 3.5 1 1 2 4 4 4 0 Allexivirus 40kDa protein Thioesterase PF00975.20 gi|212223859|ref|YP_002307095.1| - 6.9 6.7 6.4 9.8 6.2 2.4 2.6 2 1 0 2 2 2 0 Thioesterase domain Nre_C PF04895.12 gi|212223859|ref|YP_002307095.1| - 7.7 6.5 12.5 5.4 7.0 0.3 4.2 2 2 1 4 4 4 0 Archaeal Nre, C-terminal Prefoldin PF02996.17 gi|212223859|ref|YP_002307095.1| - 9.1 6.2 28.1 0.16 11.9 3.8 6.1 3 2 3 7 7 7 0 Prefoldin subunit MutS_V PF00488.21 gi|212223860|ref|YP_002307096.1| - 4.7e-06 26.8 0.0 7.8e-06 26.0 0.0 1.3 1 0 0 1 1 1 1 MutS domain V AAA_21 PF13304.6 gi|212223860|ref|YP_002307096.1| - 0.00018 21.4 0.1 0.051 13.4 0.0 2.8 3 0 0 3 3 3 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 gi|212223860|ref|YP_002307096.1| - 0.00055 20.5 6.4 0.014 15.9 0.0 3.1 2 1 0 2 2 2 1 AAA domain AAA_14 PF13173.6 gi|212223860|ref|YP_002307096.1| - 0.0026 17.8 0.0 0.014 15.4 0.0 2.2 2 0 0 2 2 2 1 AAA domain Urm1 PF09138.11 gi|212223860|ref|YP_002307096.1| - 0.0066 16.8 0.1 0.018 15.4 0.1 1.7 1 0 0 1 1 1 1 Urm1 (Ubiquitin related modifier) AAA PF00004.29 gi|212223860|ref|YP_002307096.1| - 0.027 14.9 0.1 0.12 12.8 0.0 2.2 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) CPT PF07931.12 gi|212223860|ref|YP_002307096.1| - 0.039 13.8 0.0 0.1 12.4 0.0 1.7 1 1 0 1 1 1 0 Chloramphenicol phosphotransferase-like protein AAA_28 PF13521.6 gi|212223860|ref|YP_002307096.1| - 0.041 14.1 0.0 0.085 13.1 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|212223860|ref|YP_002307096.1| - 0.079 13.3 1.1 13 6.2 0.1 3.3 3 1 0 4 4 4 0 AAA ATPase domain AAA_15 PF13175.6 gi|212223860|ref|YP_002307096.1| - 0.22 11.2 2.2 3.5 7.2 0.1 2.4 2 0 0 2 2 2 0 AAA ATPase domain MoaC PF01967.21 gi|212223862|ref|YP_002307098.1| - 1.1e-51 174.4 0.5 1.4e-51 174.2 0.5 1.0 1 0 0 1 1 1 1 MoaC family RtcB PF01139.17 gi|212223863|ref|YP_002307099.1| - 4.6e-180 599.2 0.2 5.3e-180 599.0 0.2 1.0 1 0 0 1 1 1 1 tRNA-splicing ligase RtcB Complex1_LYR PF05347.15 gi|212223863|ref|YP_002307099.1| - 0.1 12.7 0.0 0.2 11.7 0.0 1.5 1 0 0 1 1 1 0 Complex 1 protein (LYR family) RNAse_A_bac PF18431.1 gi|212223863|ref|YP_002307099.1| - 0.89 10.5 3.0 0.43 11.6 0.4 1.8 2 0 0 2 2 2 0 Bacterial CdiA-CT RNAse A domain Methyltranf_PUA PF13636.6 gi|212223864|ref|YP_002307100.1| - 4e-16 58.7 0.2 6.5e-16 58.1 0.2 1.4 1 0 0 1 1 1 1 RNA-binding PUA-like domain of methyltransferase RsmF Methyltr_RsmB-F PF01189.17 gi|212223865|ref|YP_002307101.1| - 1.2e-52 178.5 0.0 1.6e-52 178.1 0.0 1.1 1 0 0 1 1 1 1 16S rRNA methyltransferase RsmB/F Methyltr_RsmF_N PF17125.5 gi|212223865|ref|YP_002307101.1| - 7.7e-17 61.6 0.0 2.5e-16 59.9 0.0 1.8 2 0 0 2 2 2 1 N-terminal domain of 16S rRNA methyltransferase RsmF FtsJ PF01728.19 gi|212223865|ref|YP_002307101.1| - 0.0028 17.8 0.0 0.0045 17.1 0.0 1.3 1 0 0 1 1 1 1 FtsJ-like methyltransferase Met_10 PF02475.16 gi|212223865|ref|YP_002307101.1| - 0.018 14.8 0.0 0.031 14.0 0.0 1.3 1 0 0 1 1 1 0 Met-10+ like-protein Methyltransf_25 PF13649.6 gi|212223865|ref|YP_002307101.1| - 0.11 13.2 0.0 0.78 10.5 0.0 2.1 2 0 0 2 2 2 0 Methyltransferase domain Archease PF01951.16 gi|212223866|ref|YP_002307102.1| - 4.4e-45 153.3 0.2 5.7e-45 152.9 0.2 1.2 1 0 0 1 1 1 1 Archease protein family (MTH1598/TM1083) Pantoate_transf PF02548.15 gi|212223867|ref|YP_002307103.1| - 2.4e-106 354.9 0.2 2.8e-106 354.7 0.2 1.0 1 0 0 1 1 1 1 Ketopantoate hydroxymethyltransferase PEP_mutase PF13714.6 gi|212223867|ref|YP_002307103.1| - 1.6e-09 37.5 0.9 3.2e-08 33.3 0.1 2.1 2 0 0 2 2 2 1 Phosphoenolpyruvate phosphomutase NanE PF04131.14 gi|212223867|ref|YP_002307103.1| - 0.035 13.3 0.9 3.2 6.9 0.0 2.9 3 0 0 3 3 3 0 Putative N-acetylmannosamine-6-phosphate epimerase ComA PF02679.15 gi|212223867|ref|YP_002307103.1| - 0.092 12.2 0.2 3.4 7.1 0.1 2.2 1 1 1 2 2 2 0 (2R)-phospho-3-sulfolactate synthase (ComA) Peptidase_U32 PF01136.19 gi|212223867|ref|YP_002307103.1| - 0.12 11.5 0.1 0.26 10.4 0.1 1.5 1 0 0 1 1 1 0 Peptidase family U32 RuvA_C PF07499.13 gi|212223867|ref|YP_002307103.1| - 0.14 12.6 0.5 1.2 9.6 0.0 2.7 3 0 0 3 3 3 0 RuvA, C-terminal domain Glycos_transf_2 PF00535.26 gi|212223868|ref|YP_002307104.1| - 1.1e-38 132.8 0.1 1.3e-38 132.4 0.1 1.1 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|212223868|ref|YP_002307104.1| - 2e-11 44.2 0.0 3.4e-11 43.5 0.0 1.3 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.9 gi|212223868|ref|YP_002307104.1| - 1.2e-06 28.3 0.0 2.4e-06 27.2 0.0 1.5 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 gi|212223868|ref|YP_002307104.1| - 0.0023 18.4 0.0 0.0039 17.7 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 EamA PF00892.20 gi|212223869|ref|YP_002307105.1| - 8.4e-32 110.2 33.6 1.3e-19 70.7 11.0 2.2 2 0 0 2 2 2 2 EamA-like transporter family EmrE PF13536.6 gi|212223869|ref|YP_002307105.1| - 0.0016 18.1 2.2 0.0016 18.1 2.2 1.8 1 1 0 1 1 1 1 Putative multidrug resistance efflux transporter Sugar_transport PF06800.12 gi|212223869|ref|YP_002307105.1| - 1.3 8.3 16.4 0.057 12.7 3.3 3.0 3 0 0 3 3 3 0 Sugar transport protein PAP2_3 PF14378.6 gi|212223871|ref|YP_002307107.1| - 3.7e-11 43.1 9.6 3.7e-11 43.1 9.6 2.2 2 1 0 2 2 2 1 PAP2 superfamily PAP2 PF01569.21 gi|212223871|ref|YP_002307107.1| - 2.7e-08 33.7 3.3 2.7e-08 33.7 3.3 2.1 3 0 0 3 3 3 1 PAP2 superfamily PAP2_C PF14360.6 gi|212223871|ref|YP_002307107.1| - 0.033 14.7 2.0 0.033 14.7 2.0 3.1 4 0 0 4 4 4 0 PAP2 superfamily C-terminal Hydrolase_3 PF08282.12 gi|212223872|ref|YP_002307108.1| - 1.1e-05 25.4 0.4 0.0018 18.0 0.3 2.1 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|212223872|ref|YP_002307108.1| - 0.011 16.1 1.9 0.61 10.3 0.1 2.6 1 1 0 1 1 1 0 haloacid dehalogenase-like hydrolase UPF0029 PF01205.19 gi|212223873|ref|YP_002307109.1| - 5.4e-33 113.5 0.0 7.6e-33 113.0 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized protein family UPF0029 DUF1949 PF09186.11 gi|212223873|ref|YP_002307109.1| - 3.9e-12 45.8 0.3 8.9e-12 44.7 0.0 1.8 2 0 0 2 2 2 1 Domain of unknown function (DUF1949) DEAD PF00270.29 gi|212223874|ref|YP_002307110.1| - 7.4e-22 78.0 0.0 1.3e-21 77.1 0.0 1.4 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|212223874|ref|YP_002307110.1| - 5.9e-21 74.9 0.0 2.3e-19 69.8 0.0 2.4 2 0 0 2 2 2 1 Helicase conserved C-terminal domain DUF1998 PF09369.10 gi|212223874|ref|YP_002307110.1| - 6.5e-16 58.9 0.0 2.1e-15 57.2 0.0 1.9 1 0 0 1 1 1 1 Domain of unknown function (DUF1998) ResIII PF04851.15 gi|212223874|ref|YP_002307110.1| - 5.9e-05 23.1 0.0 0.00012 22.1 0.0 1.5 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit Peptidase_M50B PF13398.6 gi|212223875|ref|YP_002307111.1| - 0.015 14.9 1.0 0.017 14.8 1.0 1.0 1 0 0 1 1 1 0 Peptidase M50B-like ABC_tran PF00005.27 gi|212223876|ref|YP_002307112.1| - 8.9e-42 142.9 0.0 3.3e-21 76.2 0.0 2.5 2 0 0 2 2 2 2 ABC transporter AAA_21 PF13304.6 gi|212223876|ref|YP_002307112.1| - 3.3e-14 53.4 5.6 0.0028 17.5 0.1 4.3 3 1 1 4 4 4 4 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|212223876|ref|YP_002307112.1| - 9.3e-13 48.1 1.5 0.00049 19.6 0.0 4.1 4 0 0 4 4 4 2 RecF/RecN/SMC N terminal domain RLI PF04068.15 gi|212223876|ref|YP_002307112.1| - 4.8e-12 45.5 2.0 9.8e-12 44.5 2.0 1.6 1 0 0 1 1 1 1 Possible Fer4-like domain in RNase L inhibitor, RLI Fer4_6 PF12837.7 gi|212223876|ref|YP_002307112.1| - 3.5e-09 36.3 12.3 0.00024 21.0 2.9 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain AAA PF00004.29 gi|212223876|ref|YP_002307112.1| - 5.9e-07 30.0 0.1 0.012 16.0 0.0 2.8 2 1 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) Fer4 PF00037.27 gi|212223876|ref|YP_002307112.1| - 7.5e-07 28.7 3.5 7.5e-07 28.7 3.5 3.5 3 1 0 3 3 3 1 4Fe-4S binding domain AAA_16 PF13191.6 gi|212223876|ref|YP_002307112.1| - 5.5e-06 26.9 0.0 0.047 14.1 0.0 2.6 2 1 0 2 2 2 2 AAA ATPase domain Fer4_21 PF14697.6 gi|212223876|ref|YP_002307112.1| - 1e-05 25.5 10.3 2.7e-05 24.2 10.3 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain AAA_24 PF13479.6 gi|212223876|ref|YP_002307112.1| - 1.5e-05 24.8 0.1 0.044 13.5 0.0 2.4 2 0 0 2 2 2 2 AAA domain Fer4_9 PF13187.6 gi|212223876|ref|YP_002307112.1| - 3.1e-05 24.1 6.6 6.4e-05 23.0 6.6 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Rad17 PF03215.15 gi|212223876|ref|YP_002307112.1| - 4.4e-05 23.5 0.0 0.11 12.4 0.0 2.3 2 0 0 2 2 2 2 Rad17 P-loop domain Fer4_10 PF13237.6 gi|212223876|ref|YP_002307112.1| - 5.7e-05 23.2 10.7 0.00071 19.6 10.8 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|212223876|ref|YP_002307112.1| - 7.7e-05 23.2 10.7 0.0016 19.0 11.7 2.2 1 1 2 3 3 3 3 4Fe-4S dicluster domain AAA_33 PF13671.6 gi|212223876|ref|YP_002307112.1| - 8.4e-05 22.8 0.2 0.36 11.0 0.0 2.9 3 1 0 3 3 2 2 AAA domain RNA_helicase PF00910.22 gi|212223876|ref|YP_002307112.1| - 0.00014 22.2 0.0 0.44 11.0 0.0 2.5 2 0 0 2 2 2 2 RNA helicase Fer4_2 PF12797.7 gi|212223876|ref|YP_002307112.1| - 0.00016 21.6 11.6 0.003 17.6 2.2 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain AAA_22 PF13401.6 gi|212223876|ref|YP_002307112.1| - 0.00018 21.8 0.1 0.42 10.9 0.0 2.9 2 1 0 2 2 2 1 AAA domain AAA_23 PF13476.6 gi|212223876|ref|YP_002307112.1| - 0.00019 22.0 3.8 0.28 11.7 0.0 2.6 2 1 0 2 2 2 2 AAA domain AAA_15 PF13175.6 gi|212223876|ref|YP_002307112.1| - 0.00026 20.8 0.3 0.17 11.5 0.0 3.3 4 0 0 4 4 3 1 AAA ATPase domain AAA_14 PF13173.6 gi|212223876|ref|YP_002307112.1| - 0.00037 20.5 0.1 1.7 8.7 0.0 3.6 4 0 0 4 4 3 1 AAA domain AAA_28 PF13521.6 gi|212223876|ref|YP_002307112.1| - 0.0005 20.4 0.3 0.94 9.7 0.0 2.7 3 0 0 3 3 2 2 AAA domain AAA_18 PF13238.6 gi|212223876|ref|YP_002307112.1| - 0.00081 19.9 0.1 0.09 13.3 0.0 3.0 3 0 0 3 3 2 1 AAA domain AAA_29 PF13555.6 gi|212223876|ref|YP_002307112.1| - 0.0014 18.3 0.1 2.5 7.9 0.0 2.5 2 0 0 2 2 2 2 P-loop containing region of AAA domain NACHT PF05729.12 gi|212223876|ref|YP_002307112.1| - 0.0021 18.0 1.6 0.28 11.1 0.1 2.6 2 0 0 2 2 2 1 NACHT domain AAA_30 PF13604.6 gi|212223876|ref|YP_002307112.1| - 0.0022 17.7 1.6 0.59 9.8 0.1 2.8 3 0 0 3 3 2 1 AAA domain dNK PF01712.19 gi|212223876|ref|YP_002307112.1| - 0.0027 17.6 0.1 2.3 8.0 0.0 2.3 2 0 0 2 2 2 1 Deoxynucleoside kinase RsgA_GTPase PF03193.16 gi|212223876|ref|YP_002307112.1| - 0.0027 17.6 0.0 0.35 10.8 0.0 2.6 2 0 0 2 2 2 1 RsgA GTPase SRP54 PF00448.22 gi|212223876|ref|YP_002307112.1| - 0.0036 17.0 3.3 0.56 9.8 0.1 2.4 2 0 0 2 2 2 2 SRP54-type protein, GTPase domain NB-ARC PF00931.22 gi|212223876|ref|YP_002307112.1| - 0.0042 16.3 0.0 1 8.5 0.0 2.4 2 0 0 2 2 2 1 NB-ARC domain TsaE PF02367.17 gi|212223876|ref|YP_002307112.1| - 0.01 15.9 0.8 0.94 9.5 0.0 2.7 3 0 0 3 3 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_25 PF13481.6 gi|212223876|ref|YP_002307112.1| - 0.023 14.3 0.4 1.6 8.3 0.1 2.6 2 0 0 2 2 2 0 AAA domain Fer4_16 PF13484.6 gi|212223876|ref|YP_002307112.1| - 0.028 15.4 10.5 0.076 14.0 3.0 2.4 1 1 2 3 3 3 0 4Fe-4S double cluster binding domain AAA_7 PF12775.7 gi|212223876|ref|YP_002307112.1| - 0.038 13.5 0.4 7.1 6.1 0.0 2.3 2 0 0 2 2 2 0 P-loop containing dynein motor region AAA_5 PF07728.14 gi|212223876|ref|YP_002307112.1| - 0.046 13.7 0.5 14 5.6 0.1 2.6 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_13 PF13166.6 gi|212223876|ref|YP_002307112.1| - 0.058 12.0 0.1 5.9 5.4 0.0 2.1 2 0 0 2 2 2 0 AAA domain PhoH PF02562.16 gi|212223876|ref|YP_002307112.1| - 0.075 12.5 0.3 12 5.3 0.1 2.6 2 0 0 2 2 2 0 PhoH-like protein VirE PF05272.11 gi|212223876|ref|YP_002307112.1| - 0.091 12.5 0.0 14 5.3 0.0 2.3 2 0 0 2 2 2 0 Virulence-associated protein E MMR_HSR1 PF01926.23 gi|212223876|ref|YP_002307112.1| - 0.17 12.0 0.5 4.9 7.3 0.0 2.7 2 1 0 2 2 2 0 50S ribosome-binding GTPase DLIC PF05783.11 gi|212223876|ref|YP_002307112.1| - 0.17 10.6 0.5 1.3 7.8 0.0 2.0 2 0 0 2 2 2 0 Dynein light intermediate chain (DLIC) RuvB_N PF05496.12 gi|212223876|ref|YP_002307112.1| - 0.18 11.6 1.9 15 5.3 0.0 3.0 4 0 0 4 4 2 0 Holliday junction DNA helicase RuvB P-loop domain AAA_6 PF12774.7 gi|212223876|ref|YP_002307112.1| - 0.19 10.7 0.1 2.1 7.3 0.0 2.0 2 0 0 2 2 2 0 Hydrolytic ATP binding site of dynein motor region ATP_bind_1 PF03029.17 gi|212223876|ref|YP_002307112.1| - 0.2 11.4 0.8 7.3 6.3 0.1 2.6 3 0 0 3 3 2 0 Conserved hypothetical ATP binding protein Fer4_3 PF12798.7 gi|212223876|ref|YP_002307112.1| - 0.25 12.4 17.5 1 10.4 5.5 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain DUF87 PF01935.17 gi|212223876|ref|YP_002307112.1| - 0.29 11.2 0.8 5 7.2 0.0 2.7 3 0 0 3 3 2 0 Helicase HerA, central domain MobB PF03205.14 gi|212223876|ref|YP_002307112.1| - 0.33 10.8 2.9 9.6 6.1 0.0 3.0 3 0 0 3 3 3 0 Molybdopterin guanine dinucleotide synthesis protein B ATPase PF06745.13 gi|212223876|ref|YP_002307112.1| - 0.41 9.9 1.8 3.9 6.8 0.0 2.4 2 0 0 2 2 2 0 KaiC Fer4_4 PF12800.7 gi|212223876|ref|YP_002307112.1| - 0.46 11.1 13.8 0.77 10.4 3.6 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain AAA_19 PF13245.6 gi|212223876|ref|YP_002307112.1| - 0.66 10.3 4.1 12 6.2 0.1 2.8 3 0 0 3 3 2 0 AAA domain Fer4_17 PF13534.6 gi|212223876|ref|YP_002307112.1| - 0.86 10.2 9.3 0.34 11.5 2.5 2.3 1 1 1 2 2 2 0 4Fe-4S dicluster domain NTPase_1 PF03266.15 gi|212223876|ref|YP_002307112.1| - 0.94 9.4 8.2 3.2 7.7 0.2 3.5 4 0 0 4 4 3 0 NTPase Fer4_8 PF13183.6 gi|212223876|ref|YP_002307112.1| - 8.2 7.0 12.1 2.1 8.9 3.7 2.4 1 1 1 2 2 2 0 4Fe-4S dicluster domain DUF4405 PF14358.6 gi|212223877|ref|YP_002307113.1| - 3.7e-17 62.6 6.8 3.7e-17 62.6 6.8 1.9 3 0 0 3 3 3 1 Domain of unknown function (DUF4405) Ni_hydr_CYTB PF01292.20 gi|212223877|ref|YP_002307113.1| - 0.00078 19.1 4.2 0.00078 19.1 4.2 1.4 2 0 0 2 2 2 1 Prokaryotic cytochrome b561 IF2_N PF04760.15 gi|212223877|ref|YP_002307113.1| - 0.0017 18.1 0.4 0.0041 16.9 0.1 1.9 2 0 0 2 2 2 1 Translation initiation factor IF-2, N-terminal region DUF4079 PF13301.6 gi|212223877|ref|YP_002307113.1| - 0.029 14.5 2.3 0.043 14.0 0.6 2.0 2 1 0 2 2 2 0 Protein of unknown function (DUF4079) Ferric_reduct PF01794.19 gi|212223877|ref|YP_002307113.1| - 0.045 13.9 3.2 0.079 13.1 3.1 1.6 1 1 0 1 1 1 0 Ferric reductase like transmembrane component Cytochrom_B561 PF03188.16 gi|212223877|ref|YP_002307113.1| - 0.73 10.0 5.9 0.82 9.8 2.4 2.2 1 1 0 2 2 2 0 Eukaryotic cytochrome b561 SdpI PF13630.6 gi|212223877|ref|YP_002307113.1| - 1.7 8.9 8.8 0.071 13.2 1.9 2.0 1 1 1 2 2 2 0 SdpI/YhfL protein family PepSY_TM PF03929.16 gi|212223877|ref|YP_002307113.1| - 5.3 6.6 6.2 4.7 6.8 5.1 1.3 1 1 0 1 1 1 0 PepSY-associated TM region DUF4320 PF14208.6 gi|212223878|ref|YP_002307114.1| - 0.048 13.7 0.6 0.053 13.6 0.6 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4320) CW_binding_2 PF04122.12 gi|212223879|ref|YP_002307115.1| - 9.1e-07 29.4 1.5 0.034 14.8 0.0 3.1 3 0 0 3 3 3 2 Putative cell wall binding repeat 2 DUF4398 PF14346.6 gi|212223879|ref|YP_002307115.1| - 0.011 16.3 2.2 0.025 15.2 2.2 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4398) HCV_NS4a PF01006.20 gi|212223879|ref|YP_002307115.1| - 0.062 13.1 0.7 0.21 11.4 0.7 1.9 1 0 0 1 1 1 0 Hepatitis C virus non-structural protein NS4a DUF2202 PF09968.9 gi|212223880|ref|YP_002307116.1| - 1.3e-66 223.4 1.6 1.8e-66 223.0 1.6 1.1 1 0 0 1 1 1 1 Uncharacterized protein domain (DUF2202) Rubrerythrin PF02915.17 gi|212223880|ref|YP_002307116.1| - 0.14 12.5 0.0 0.41 11.0 0.0 1.8 1 1 0 1 1 1 0 Rubrerythrin HTH_20 PF12840.7 gi|212223883|ref|YP_002307119.1| - 4.6e-14 52.2 0.1 6.1e-14 51.8 0.1 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|212223883|ref|YP_002307119.1| - 5.4e-13 48.6 0.2 8.3e-13 48.0 0.2 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family TrmB PF01978.19 gi|212223883|ref|YP_002307119.1| - 6.8e-07 29.1 0.2 1.1e-06 28.5 0.2 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB PadR PF03551.14 gi|212223883|ref|YP_002307119.1| - 3.1e-05 23.9 1.4 0.00015 21.7 1.4 1.9 1 1 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_24 PF13412.6 gi|212223883|ref|YP_002307119.1| - 6.2e-05 22.5 0.3 0.00061 19.3 0.1 2.4 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.12 gi|212223883|ref|YP_002307119.1| - 0.00025 20.9 0.2 0.00047 20.0 0.2 1.5 1 0 0 1 1 1 1 HTH domain HTH_34 PF13601.6 gi|212223883|ref|YP_002307119.1| - 0.0003 20.9 0.1 0.00043 20.4 0.1 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR_2 PF12802.7 gi|212223883|ref|YP_002307119.1| - 0.0005 19.9 0.0 0.00073 19.4 0.0 1.3 1 0 0 1 1 1 1 MarR family MarR PF01047.22 gi|212223883|ref|YP_002307119.1| - 0.00058 19.7 0.1 0.0014 18.5 0.1 1.7 1 1 1 2 2 2 1 MarR family Mga PF05043.13 gi|212223883|ref|YP_002307119.1| - 0.0014 19.1 0.1 0.0019 18.7 0.1 1.2 1 0 0 1 1 1 1 Mga helix-turn-helix domain HTH_23 PF13384.6 gi|212223883|ref|YP_002307119.1| - 0.0021 17.8 0.1 0.0033 17.2 0.1 1.4 1 0 0 1 1 1 1 Homeodomain-like domain HxlR PF01638.17 gi|212223883|ref|YP_002307119.1| - 0.0031 17.3 0.1 0.0036 17.1 0.1 1.2 1 0 0 1 1 1 1 HxlR-like helix-turn-helix HTH_10 PF04967.12 gi|212223883|ref|YP_002307119.1| - 0.0067 16.2 0.3 0.014 15.2 0.0 1.6 2 0 0 2 2 2 1 HTH DNA binding domain Rrf2 PF02082.20 gi|212223883|ref|YP_002307119.1| - 0.0094 16.3 0.2 0.015 15.6 0.1 1.5 1 1 1 2 2 2 1 Transcriptional regulator HTH_Crp_2 PF13545.6 gi|212223883|ref|YP_002307119.1| - 0.0097 15.9 0.0 0.019 14.9 0.0 1.5 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain ArsR PF09824.9 gi|212223883|ref|YP_002307119.1| - 0.016 14.8 0.2 0.018 14.6 0.2 1.1 1 0 0 1 1 1 0 ArsR transcriptional regulator TFIIE_alpha PF02002.17 gi|212223883|ref|YP_002307119.1| - 0.027 14.3 0.9 0.031 14.1 0.9 1.2 1 0 0 1 1 1 0 TFIIE alpha subunit HTH_8 PF02954.19 gi|212223883|ref|YP_002307119.1| - 0.028 14.2 0.4 0.028 14.2 0.4 1.7 2 0 0 2 2 2 0 Bacterial regulatory protein, Fis family HTH_CodY PF08222.11 gi|212223883|ref|YP_002307119.1| - 0.03 13.9 0.1 0.13 11.9 0.0 2.0 2 1 0 2 2 2 0 CodY helix-turn-helix domain B-block_TFIIIC PF04182.12 gi|212223883|ref|YP_002307119.1| - 0.039 14.1 0.0 0.065 13.4 0.0 1.4 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC HTH_26 PF13443.6 gi|212223883|ref|YP_002307119.1| - 0.041 14.3 0.1 0.16 12.4 0.1 1.9 2 0 0 2 2 2 0 Cro/C1-type HTH DNA-binding domain HTH_22 PF13309.6 gi|212223883|ref|YP_002307119.1| - 0.13 12.4 0.5 0.71 10.0 0.1 2.3 2 1 0 2 2 1 0 HTH domain BLACT_WH PF17778.1 gi|212223883|ref|YP_002307119.1| - 0.13 12.2 0.8 0.27 11.3 0.8 1.5 1 0 0 1 1 1 0 Beta-lactamase associated winged helix domain HTH_29 PF13551.6 gi|212223883|ref|YP_002307119.1| - 0.15 12.1 0.0 0.19 11.7 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn helix CAMSAP_CC1 PF17095.5 gi|212223884|ref|YP_002307120.1| - 0.00062 19.6 0.8 0.00074 19.3 0.8 1.2 1 0 0 1 1 1 1 Spectrin-binding region of Ca2+-Calmodulin Spore_permease PF03845.13 gi|212223884|ref|YP_002307120.1| - 0.00073 18.5 0.2 0.00085 18.2 0.2 1.0 1 0 0 1 1 1 1 Spore germination protein FeoB_associated PF12669.7 gi|212223884|ref|YP_002307120.1| - 0.011 16.1 0.7 0.016 15.6 0.7 1.2 1 0 0 1 1 1 0 FeoB-associated Cys-rich membrane protein TolA_bind_tri PF16331.5 gi|212223884|ref|YP_002307120.1| - 0.011 15.8 0.1 0.013 15.6 0.1 1.1 1 0 0 1 1 1 0 TolA binding protein trimerisation DUF948 PF06103.11 gi|212223884|ref|YP_002307120.1| - 0.026 14.8 1.1 0.052 13.8 1.1 1.5 1 1 0 1 1 1 0 Bacterial protein of unknown function (DUF948) Halogen_Hydrol PF10112.9 gi|212223884|ref|YP_002307120.1| - 0.043 13.8 0.0 0.05 13.6 0.0 1.1 1 0 0 1 1 1 0 5-bromo-4-chloroindolyl phosphate hydrolysis protein K_trans PF02705.16 gi|212223884|ref|YP_002307120.1| - 0.047 12.2 0.0 0.052 12.1 0.0 1.0 1 0 0 1 1 1 0 K+ potassium transporter ABC2_membrane_3 PF12698.7 gi|212223884|ref|YP_002307120.1| - 0.059 12.5 0.0 0.059 12.5 0.0 1.0 1 0 0 1 1 1 0 ABC-2 family transporter protein DUF3139 PF11337.8 gi|212223884|ref|YP_002307120.1| - 0.078 13.6 0.1 0.089 13.4 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3139) DUF4381 PF14316.6 gi|212223884|ref|YP_002307120.1| - 0.13 12.5 0.0 0.13 12.5 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4381) FlaC_arch PF05377.11 gi|212223884|ref|YP_002307120.1| - 0.21 12.0 2.2 0.26 11.7 2.2 1.2 1 0 0 1 1 1 0 Flagella accessory protein C (FlaC) LapA_dom PF06305.11 gi|212223884|ref|YP_002307120.1| - 0.23 11.3 2.0 0.46 10.3 2.0 1.6 1 1 0 1 1 1 0 Lipopolysaccharide assembly protein A domain AIRS_C PF02769.22 gi|212223885|ref|YP_002307121.1| - 2e-29 102.8 1.0 1.5e-28 99.9 0.6 2.0 2 0 0 2 2 2 1 AIR synthase related protein, C-terminal domain AIRS PF00586.24 gi|212223885|ref|YP_002307121.1| - 4.6e-17 62.5 0.1 1e-16 61.4 0.1 1.5 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain HSDR_N PF04313.14 gi|212223886|ref|YP_002307122.1| - 3.7e-10 40.1 0.7 2.7e-05 24.2 0.0 2.5 2 1 1 3 3 3 2 Type I restriction enzyme R protein N terminus (HSDR_N) HSDR_N_2 PF13588.6 gi|212223886|ref|YP_002307122.1| - 5.6e-09 36.0 0.0 1.3e-08 34.8 0.0 1.6 1 0 0 1 1 1 1 Type I restriction enzyme R protein N terminus (HSDR_N) PDDEXK_9 PF08011.11 gi|212223886|ref|YP_002307122.1| - 0.027 14.4 0.0 0.059 13.3 0.0 1.6 1 0 0 1 1 1 0 PD-(D/E)XK nuclease superfamily DUF3106 PF11304.8 gi|212223886|ref|YP_002307122.1| - 0.17 12.4 1.1 0.38 11.3 1.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3106) DUF364 PF04016.12 gi|212223887|ref|YP_002307123.1| - 2.9e-34 117.7 0.0 5.1e-34 117.0 0.0 1.3 1 0 0 1 1 1 1 Putative heavy-metal chelation DUF4213 PF13938.6 gi|212223887|ref|YP_002307123.1| - 1.5e-12 47.5 0.0 2.6e-12 46.8 0.0 1.4 1 0 0 1 1 1 1 Putative heavy-metal chelation DNA_photolyase PF00875.18 gi|212223887|ref|YP_002307123.1| - 0.17 11.9 0.0 0.35 10.9 0.0 1.5 1 0 0 1 1 1 0 DNA photolyase GATase_6 PF13522.6 gi|212223888|ref|YP_002307124.1| - 2.7e-08 34.1 0.0 5.5e-08 33.1 0.0 1.6 1 1 0 1 1 1 1 Glutamine amidotransferase domain GATase_4 PF13230.6 gi|212223888|ref|YP_002307124.1| - 1.5e-07 30.6 0.1 3e-07 29.6 0.0 1.4 2 0 0 2 2 2 1 Glutamine amidotransferases class-II Soc PF16855.5 gi|212223888|ref|YP_002307124.1| - 0.047 14.2 0.1 0.1 13.1 0.1 1.5 1 0 0 1 1 1 0 Small outer capsid protein CBS PF00571.28 gi|212223889|ref|YP_002307125.1| - 1.7e-26 92.4 5.2 8.8e-15 54.9 0.2 2.1 2 0 0 2 2 2 2 CBS domain Metallophos PF00149.28 gi|212223890|ref|YP_002307126.1| - 9.8e-29 101.3 8.4 9.3e-20 72.0 4.1 2.5 2 1 0 2 2 2 2 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|212223890|ref|YP_002307126.1| - 8.9e-24 84.5 1.0 2e-13 50.9 0.4 2.7 2 1 0 2 2 2 2 Calcineurin-like phosphoesterase superfamily domain Metallophos_3 PF14582.6 gi|212223890|ref|YP_002307126.1| - 0.00015 21.2 2.5 0.28 10.5 0.0 3.3 3 1 0 3 3 3 2 Metallophosphoesterase, calcineurin superfamily PhoD PF09423.10 gi|212223890|ref|YP_002307126.1| - 0.015 14.3 0.0 9.2 5.2 0.0 3.1 3 0 0 3 3 3 0 PhoD-like phosphatase ATP-cone PF03477.16 gi|212223891|ref|YP_002307127.1| - 2.8e-11 43.8 1.1 1.4e-10 41.6 0.0 2.5 2 1 1 3 3 3 1 ATP cone domain AAA_18 PF13238.6 gi|212223891|ref|YP_002307127.1| - 6.6e-05 23.5 0.0 0.00015 22.3 0.0 1.7 1 0 0 1 1 1 1 AAA domain Zeta_toxin PF06414.12 gi|212223891|ref|YP_002307127.1| - 0.00011 21.6 0.0 0.0024 17.2 0.0 2.4 2 0 0 2 2 2 1 Zeta toxin AAA_33 PF13671.6 gi|212223891|ref|YP_002307127.1| - 0.0015 18.7 0.0 0.0049 17.0 0.0 2.1 1 1 1 2 2 2 1 AAA domain AAA_28 PF13521.6 gi|212223891|ref|YP_002307127.1| - 0.0033 17.7 0.8 0.009 16.3 0.1 1.9 2 0 0 2 2 2 1 AAA domain AAA_5 PF07728.14 gi|212223891|ref|YP_002307127.1| - 0.016 15.2 0.1 0.1 12.6 0.1 2.1 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_17 PF13207.6 gi|212223891|ref|YP_002307127.1| - 0.018 15.5 0.5 0.077 13.4 0.0 2.3 3 0 0 3 3 3 0 AAA domain Cytidylate_kin2 PF13189.6 gi|212223891|ref|YP_002307127.1| - 0.024 14.8 0.1 0.07 13.3 0.1 2.0 1 1 0 1 1 1 0 Cytidylate kinase-like family AAA_25 PF13481.6 gi|212223891|ref|YP_002307127.1| - 0.026 14.1 0.0 0.048 13.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_29 PF13555.6 gi|212223891|ref|YP_002307127.1| - 0.029 14.1 0.0 0.064 13.0 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|212223891|ref|YP_002307127.1| - 0.039 14.3 0.0 0.067 13.6 0.0 1.5 1 0 0 1 1 1 0 AAA ATPase domain ParA PF10609.9 gi|212223891|ref|YP_002307127.1| - 0.071 12.5 0.9 0.16 11.4 0.2 1.8 2 0 0 2 2 2 0 NUBPL iron-transfer P-loop NTPase AAA PF00004.29 gi|212223891|ref|YP_002307127.1| - 0.12 12.8 0.1 0.31 11.5 0.0 1.9 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) CbiA PF01656.23 gi|212223891|ref|YP_002307127.1| - 0.13 12.3 4.2 0.16 12.0 0.9 2.5 3 1 0 3 3 3 0 CobQ/CobB/MinD/ParA nucleotide binding domain RsgA_GTPase PF03193.16 gi|212223891|ref|YP_002307127.1| - 0.14 12.1 0.2 0.25 11.2 0.2 1.5 1 1 0 1 1 1 0 RsgA GTPase AAA_26 PF13500.6 gi|212223892|ref|YP_002307128.1| - 0.11 12.3 0.0 0.21 11.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain CBFD_NFYB_HMF PF00808.23 gi|212223893|ref|YP_002307129.1| - 0.0025 18.0 0.3 0.0039 17.4 0.3 1.5 1 1 0 1 1 1 1 Histone-like transcription factor (CBF/NF-Y) and archaeal histone YbaB_DNA_bd PF02575.16 gi|212223893|ref|YP_002307129.1| - 0.031 14.5 0.4 0.04 14.1 0.4 1.2 1 1 0 1 1 1 0 YbaB/EbfC DNA-binding family Lactamase_B PF00753.27 gi|212223894|ref|YP_002307130.1| - 9.2e-09 35.6 0.1 1.2e-08 35.2 0.1 1.2 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|212223894|ref|YP_002307130.1| - 0.065 12.7 0.0 0.1 12.1 0.0 1.3 1 0 0 1 1 1 0 Beta-lactamase superfamily domain PDDEXK_1 PF12705.7 gi|212223895|ref|YP_002307131.1| - 1.8e-06 28.1 0.0 3.6e-05 23.8 0.0 2.0 1 1 1 2 2 2 2 PD-(D/E)XK nuclease superfamily Cas_Cas4 PF01930.17 gi|212223895|ref|YP_002307131.1| - 0.00065 19.8 0.0 0.0045 17.1 0.0 2.2 1 1 0 1 1 1 1 Domain of unknown function DUF83 Met_10 PF02475.16 gi|212223897|ref|YP_002307133.1| - 3e-69 232.8 0.4 3.6e-69 232.5 0.4 1.1 1 0 0 1 1 1 1 Met-10+ like-protein Cons_hypoth95 PF03602.15 gi|212223897|ref|YP_002307133.1| - 0.00013 21.6 0.0 0.00022 20.9 0.0 1.3 1 0 0 1 1 1 1 Conserved hypothetical protein 95 PrmA PF06325.13 gi|212223897|ref|YP_002307133.1| - 0.00017 21.1 0.0 0.00023 20.6 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) DNA_methylase PF00145.17 gi|212223897|ref|YP_002307133.1| - 0.0084 15.5 0.0 0.019 14.3 0.0 1.6 2 0 0 2 2 2 1 C-5 cytosine-specific DNA methylase Methyltransf_15 PF09445.10 gi|212223897|ref|YP_002307133.1| - 0.021 14.4 0.0 0.033 13.8 0.0 1.3 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase Methyltransf_25 PF13649.6 gi|212223897|ref|YP_002307133.1| - 0.022 15.4 0.0 0.039 14.7 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain MTS PF05175.14 gi|212223897|ref|YP_002307133.1| - 0.028 13.9 0.0 0.047 13.2 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase small domain Pox_A51 PF04948.13 gi|212223897|ref|YP_002307133.1| - 0.11 11.3 0.0 0.16 10.8 0.0 1.1 1 0 0 1 1 1 0 Poxvirus A51 protein AFOR_C PF01314.18 gi|212223898|ref|YP_002307134.1| - 1.7e-109 366.3 0.0 2e-109 366.1 0.0 1.1 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.15 gi|212223898|ref|YP_002307134.1| - 2.5e-77 259.2 0.8 3.4e-77 258.8 0.8 1.2 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain ThiS PF02597.20 gi|212223899|ref|YP_002307135.1| - 2e-09 38.0 0.1 2.3e-09 37.8 0.1 1.0 1 0 0 1 1 1 1 ThiS family Ub-Mut7C PF14451.6 gi|212223899|ref|YP_002307135.1| - 0.0013 18.5 0.1 0.0032 17.3 0.1 1.7 1 1 0 1 1 1 1 Mut7-C ubiquitin ThiS-like PF14453.6 gi|212223899|ref|YP_002307135.1| - 0.028 14.5 0.2 0.052 13.6 0.2 1.4 1 1 0 1 1 1 0 ThiS-like ubiquitin Ribosomal_S10 PF00338.22 gi|212223900|ref|YP_002307136.1| - 1.1e-27 96.1 0.1 1.2e-27 96.0 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein S10p/S20e PriA_C PF18074.1 gi|212223900|ref|YP_002307136.1| - 0.0089 16.8 0.2 0.015 16.1 0.1 1.4 2 0 0 2 2 2 1 Primosomal protein N C-terminal domain GTP_EFTU PF00009.27 gi|212223901|ref|YP_002307137.1| - 9.2e-59 198.3 0.1 1.3e-58 197.8 0.1 1.1 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D3 PF03143.17 gi|212223901|ref|YP_002307137.1| - 8.5e-39 132.3 0.2 2.2e-38 131.0 0.2 1.7 1 0 0 1 1 1 1 Elongation factor Tu C-terminal domain GTP_EFTU_D2 PF03144.25 gi|212223901|ref|YP_002307137.1| - 5e-19 68.5 3.3 7.6e-18 64.7 0.6 3.2 4 0 0 4 4 4 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 gi|212223901|ref|YP_002307137.1| - 1.2e-05 25.4 0.1 4.8e-05 23.4 0.1 2.1 1 1 0 1 1 1 1 50S ribosome-binding GTPase RsgA_GTPase PF03193.16 gi|212223901|ref|YP_002307137.1| - 0.0069 16.3 0.3 0.17 11.8 0.1 2.4 1 1 1 2 2 2 1 RsgA GTPase FeoB_N PF02421.18 gi|212223901|ref|YP_002307137.1| - 0.021 14.3 0.6 0.17 11.4 0.1 2.5 2 1 0 2 2 2 0 Ferrous iron transport protein B GTP_EFTU_D4 PF14578.6 gi|212223901|ref|YP_002307137.1| - 0.071 13.0 0.4 0.21 11.5 0.4 1.8 1 0 0 1 1 1 0 Elongation factor Tu domain 4 Gtr1_RagA PF04670.12 gi|212223901|ref|YP_002307137.1| - 0.099 12.0 0.0 8.1 5.7 0.0 2.3 2 0 0 2 2 2 0 Gtr1/RagA G protein conserved region Dynamin_N PF00350.23 gi|212223901|ref|YP_002307137.1| - 0.13 12.3 0.0 13 5.8 0.0 2.4 1 1 1 2 2 2 0 Dynamin family DUF234 PF03008.14 gi|212223902|ref|YP_002307138.1| - 1.8e-33 114.9 2.0 2.3e-33 114.6 2.0 1.1 1 0 0 1 1 1 1 Archaea bacterial proteins of unknown function UPF0102 PF02021.17 gi|212223902|ref|YP_002307138.1| - 0.0013 18.9 0.1 0.0024 18.0 0.1 1.4 1 0 0 1 1 1 1 Uncharacterised protein family UPF0102 DUF4143 PF13635.6 gi|212223902|ref|YP_002307138.1| - 0.044 13.9 0.1 0.057 13.6 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4143) ATPase_2 PF01637.18 gi|212223903|ref|YP_002307139.1| - 2.6e-22 79.9 0.1 2.6e-20 73.3 0.1 2.0 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_14 PF13173.6 gi|212223903|ref|YP_002307139.1| - 2.8e-09 37.1 0.0 3.7e-09 36.7 0.0 1.1 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|212223903|ref|YP_002307139.1| - 4.7e-05 23.8 0.0 5.6e-05 23.6 0.0 1.2 1 0 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|212223903|ref|YP_002307139.1| - 0.00065 20.0 0.0 0.013 15.8 0.0 2.1 1 1 0 1 1 1 1 AAA domain NB-ARC PF00931.22 gi|212223903|ref|YP_002307139.1| - 0.0097 15.1 0.0 0.014 14.6 0.0 1.2 1 0 0 1 1 1 1 NB-ARC domain GTP_EFTU PF00009.27 gi|212223904|ref|YP_002307140.1| - 1.8e-64 216.9 0.1 2.7e-64 216.3 0.1 1.3 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain EFG_IV PF03764.18 gi|212223904|ref|YP_002307140.1| - 3.6e-27 94.5 0.0 1.5e-26 92.6 0.0 2.1 2 0 0 2 2 2 1 Elongation factor G, domain IV EFG_II PF14492.6 gi|212223904|ref|YP_002307140.1| - 7.7e-27 93.2 0.2 1.6e-26 92.2 0.2 1.6 1 0 0 1 1 1 1 Elongation Factor G, domain II EFG_C PF00679.24 gi|212223904|ref|YP_002307140.1| - 1.8e-23 82.3 0.1 7.8e-23 80.3 0.0 2.2 2 0 0 2 2 2 1 Elongation factor G C-terminus GTP_EFTU_D2 PF03144.25 gi|212223904|ref|YP_002307140.1| - 2.6e-15 56.6 1.0 5.9e-15 55.4 1.0 1.7 1 0 0 1 1 1 1 Elongation factor Tu domain 2 RF3_C PF16658.5 gi|212223904|ref|YP_002307140.1| - 1e-05 25.4 0.0 2.6e-05 24.0 0.0 1.7 1 0 0 1 1 1 1 Class II release factor RF3, C-terminal domain MMR_HSR1 PF01926.23 gi|212223904|ref|YP_002307140.1| - 0.0023 18.0 0.0 0.0054 16.8 0.0 1.7 1 0 0 1 1 1 1 50S ribosome-binding GTPase DUF2291 PF10054.9 gi|212223904|ref|YP_002307140.1| - 0.07 12.8 0.3 0.15 11.7 0.3 1.5 1 0 0 1 1 1 0 Predicted periplasmic lipoprotein (DUF2291) DUF2283 PF10049.9 gi|212223904|ref|YP_002307140.1| - 0.082 13.1 0.0 0.41 10.9 0.0 2.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2283) Ras PF00071.22 gi|212223904|ref|YP_002307140.1| - 0.11 12.1 0.0 0.2 11.2 0.0 1.4 1 0 0 1 1 1 0 Ras family DUF4251 PF14059.6 gi|212223904|ref|YP_002307140.1| - 0.11 12.4 0.0 0.24 11.3 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4251) HD PF01966.22 gi|212223905|ref|YP_002307141.1| - 5.3e-11 42.8 0.5 5.3e-11 42.8 0.5 2.0 2 0 0 2 2 2 1 HD domain HDOD PF08668.12 gi|212223905|ref|YP_002307141.1| - 0.0005 19.6 0.0 0.0016 18.0 0.0 1.8 1 1 1 2 2 2 1 HDOD domain AAA PF00004.29 gi|212223905|ref|YP_002307141.1| - 0.085 13.3 0.3 0.15 12.5 0.3 1.3 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Com_YlbF PF06133.11 gi|212223905|ref|YP_002307141.1| - 0.11 13.1 0.7 0.5 11.0 0.8 2.0 2 0 0 2 2 2 0 Control of competence regulator ComK, YlbF/YmcA DUF3882 PF07066.11 gi|212223905|ref|YP_002307141.1| - 0.12 12.4 0.0 0.2 11.7 0.0 1.3 1 0 0 1 1 1 0 Lactococcus phage M3 protein GCHY-1 PF02649.14 gi|212223906|ref|YP_002307142.1| - 2.4e-64 217.3 2.3 2.8e-64 217.1 2.3 1.0 1 0 0 1 1 1 1 Type I GTP cyclohydrolase folE2 ATP-cone PF03477.16 gi|212223906|ref|YP_002307142.1| - 0.068 13.7 1.4 33 5.1 0.0 3.3 3 0 0 3 3 3 0 ATP cone domain ABC2_membrane_3 PF12698.7 gi|212223909|ref|YP_002307145.1| - 0.06 12.4 2.8 0.073 12.2 2.8 1.1 1 0 0 1 1 1 0 ABC-2 family transporter protein SHR3_chaperone PF08229.11 gi|212223909|ref|YP_002307145.1| - 0.3 10.0 2.0 0.52 9.3 0.0 2.0 2 1 0 2 2 2 0 ER membrane protein SH3 DUF1699 PF08004.11 gi|212223910|ref|YP_002307146.1| - 1.9e-06 27.6 0.0 3.9e-06 26.6 0.0 1.6 1 1 0 1 1 1 1 Protein of unknown function (DUF1699) HTH_7 PF02796.15 gi|212223910|ref|YP_002307146.1| - 4.6e-05 23.4 0.8 0.00012 22.1 0.6 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain of resolvase HTH_23 PF13384.6 gi|212223910|ref|YP_002307146.1| - 0.00087 19.0 0.0 0.0024 17.6 0.0 1.7 1 0 0 1 1 1 1 Homeodomain-like domain Sigma70_r4_2 PF08281.12 gi|212223910|ref|YP_002307146.1| - 0.0021 17.7 0.1 0.0051 16.4 0.0 1.6 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_24 PF13412.6 gi|212223910|ref|YP_002307146.1| - 0.0063 16.0 1.2 0.013 15.0 0.0 2.2 4 0 0 4 4 4 1 Winged helix-turn-helix DNA-binding HTH_29 PF13551.6 gi|212223910|ref|YP_002307146.1| - 0.011 15.7 0.0 1 9.5 0.0 2.3 1 1 1 2 2 2 0 Winged helix-turn helix HTH_17 PF12728.7 gi|212223910|ref|YP_002307146.1| - 0.025 14.8 0.1 1.7 8.9 0.0 2.9 1 1 2 3 3 3 0 Helix-turn-helix domain HTH_32 PF13565.6 gi|212223910|ref|YP_002307146.1| - 0.026 15.2 0.1 0.069 13.8 0.0 1.8 2 1 0 2 2 2 0 Homeodomain-like domain AT_hook PF02178.19 gi|212223910|ref|YP_002307146.1| - 0.034 14.0 0.7 0.12 12.3 0.7 1.9 1 0 0 1 1 1 0 AT hook motif HTH_40 PF14493.6 gi|212223910|ref|YP_002307146.1| - 0.041 14.3 0.2 0.16 12.4 0.0 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain GerE PF00196.19 gi|212223910|ref|YP_002307146.1| - 0.055 13.0 0.1 0.16 11.6 0.0 1.8 2 0 0 2 2 2 0 Bacterial regulatory proteins, luxR family DUF3071 PF11268.8 gi|212223910|ref|YP_002307146.1| - 0.12 12.4 0.0 0.13 12.3 0.0 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF3071) DUF530 PF04409.12 gi|212223911|ref|YP_002307147.1| - 2e-27 95.8 5.5 5.1e-23 81.2 1.5 3.8 1 1 1 2 2 2 2 Protein of unknown function (DUF530) TP6A_N PF04406.14 gi|212223912|ref|YP_002307148.1| - 1.2e-19 70.0 0.0 2.2e-19 69.2 0.0 1.4 1 0 0 1 1 1 1 Type IIB DNA topoisomerase DUF2399 PF09664.10 gi|212223912|ref|YP_002307148.1| - 0.013 15.4 0.0 0.027 14.4 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function C-terminus (DUF2399) Topo-VIb_trans PF09239.11 gi|212223913|ref|YP_002307149.1| - 4.1e-57 192.5 0.0 7.3e-57 191.6 0.0 1.4 1 0 0 1 1 1 1 Topoisomerase VI B subunit, transducer HATPase_c PF02518.26 gi|212223913|ref|YP_002307149.1| - 1.3e-11 44.9 0.2 2.9e-11 43.9 0.2 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_3 PF13589.6 gi|212223913|ref|YP_002307149.1| - 8e-10 38.7 0.0 1.6e-09 37.7 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KH_1 PF00013.29 gi|212223914|ref|YP_002307150.1| - 2.6e-16 59.2 6.6 9.6e-09 35.0 0.1 2.4 2 0 0 2 2 2 2 KH domain KH_8 PF17903.1 gi|212223914|ref|YP_002307150.1| - 7.1e-08 32.4 0.0 1.3e-07 31.6 0.0 1.5 1 0 0 1 1 1 1 Krr1 KH1 domain KH_2 PF07650.17 gi|212223914|ref|YP_002307150.1| - 0.00016 21.4 6.4 0.02 14.7 0.3 2.5 2 0 0 2 2 2 2 KH domain SLS PF14611.6 gi|212223914|ref|YP_002307150.1| - 0.047 13.5 0.3 0.099 12.5 0.0 1.6 2 0 0 2 2 2 0 Mitochondrial inner-membrane-bound regulator KH_4 PF13083.6 gi|212223914|ref|YP_002307150.1| - 0.098 12.5 7.9 1 9.3 0.1 2.9 2 2 0 2 2 2 0 KH domain RIO1 PF01163.22 gi|212223915|ref|YP_002307151.1| - 7.6e-54 182.2 0.3 1.2e-53 181.5 0.0 1.4 2 0 0 2 2 2 1 RIO1 family APH PF01636.23 gi|212223915|ref|YP_002307151.1| - 3.1e-06 27.3 0.3 1.4e-05 25.2 0.1 2.0 1 1 1 2 2 2 1 Phosphotransferase enzyme family Pkinase PF00069.25 gi|212223915|ref|YP_002307151.1| - 0.043 13.2 0.0 0.31 10.4 0.0 2.2 2 1 0 2 2 2 0 Protein kinase domain eIF-1a PF01176.19 gi|212223916|ref|YP_002307152.1| - 1.3e-20 72.9 0.6 2.3e-20 72.2 0.4 1.5 2 0 0 2 2 2 1 Translation initiation factor 1A / IF-1 RsgA_N PF16745.5 gi|212223916|ref|YP_002307152.1| - 1.4e-05 24.7 0.8 2.3e-05 24.0 0.1 1.8 2 0 0 2 2 2 1 RsgA N-terminal domain DUF4863 PF16155.5 gi|212223916|ref|YP_002307152.1| - 0.062 13.1 0.0 0.082 12.8 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4863) ABC_tran PF00005.27 gi|212223917|ref|YP_002307153.1| - 1.1e-27 97.2 0.0 1.6e-27 96.7 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|212223917|ref|YP_002307153.1| - 4.7e-15 56.2 0.2 9.6e-08 32.2 0.1 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|212223917|ref|YP_002307153.1| - 9.6e-07 28.4 0.0 1.2e-05 24.9 0.0 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|212223917|ref|YP_002307153.1| - 4.2e-05 24.1 0.0 0.00011 22.8 0.0 1.7 2 0 0 2 2 2 1 AAA domain AAA_29 PF13555.6 gi|212223917|ref|YP_002307153.1| - 0.00011 21.9 0.0 0.00025 20.7 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|212223917|ref|YP_002307153.1| - 0.00014 22.3 0.0 0.00022 21.7 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_15 PF13175.6 gi|212223917|ref|YP_002307153.1| - 0.00038 20.3 0.0 0.003 17.3 0.0 1.9 2 0 0 2 2 2 1 AAA ATPase domain RsgA_GTPase PF03193.16 gi|212223917|ref|YP_002307153.1| - 0.00039 20.4 0.0 0.00061 19.7 0.0 1.3 1 0 0 1 1 1 1 RsgA GTPase AAA_30 PF13604.6 gi|212223917|ref|YP_002307153.1| - 0.00051 19.8 0.0 0.00082 19.1 0.0 1.3 1 0 0 1 1 1 1 AAA domain DUF3584 PF12128.8 gi|212223917|ref|YP_002307153.1| - 0.0012 16.5 0.1 0.0015 16.1 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3584) AAA_22 PF13401.6 gi|212223917|ref|YP_002307153.1| - 0.0034 17.7 0.1 0.012 15.9 0.1 1.9 1 1 0 1 1 1 1 AAA domain AAA PF00004.29 gi|212223917|ref|YP_002307153.1| - 0.0041 17.5 0.6 0.027 14.9 0.6 2.2 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) NACHT PF05729.12 gi|212223917|ref|YP_002307153.1| - 0.0048 16.8 0.1 0.011 15.6 0.0 1.6 2 0 0 2 2 2 1 NACHT domain AAA_25 PF13481.6 gi|212223917|ref|YP_002307153.1| - 0.012 15.2 0.0 0.055 13.0 0.0 1.9 2 0 0 2 2 2 0 AAA domain TsaE PF02367.17 gi|212223917|ref|YP_002307153.1| - 0.018 15.0 0.0 0.033 14.2 0.0 1.3 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_27 PF13514.6 gi|212223917|ref|YP_002307153.1| - 0.02 14.5 0.0 0.034 13.7 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_13 PF13166.6 gi|212223917|ref|YP_002307153.1| - 0.021 13.5 0.1 0.099 11.3 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_5 PF07728.14 gi|212223917|ref|YP_002307153.1| - 0.036 14.1 0.0 0.09 12.8 0.0 1.7 2 0 0 2 2 1 0 AAA domain (dynein-related subfamily) ATP-synt_ab PF00006.25 gi|212223917|ref|YP_002307153.1| - 0.039 13.6 0.0 0.062 12.9 0.0 1.3 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain ATPase_2 PF01637.18 gi|212223917|ref|YP_002307153.1| - 0.041 13.8 0.0 0.17 11.7 0.0 1.8 2 0 0 2 2 2 0 ATPase domain predominantly from Archaea AAA_28 PF13521.6 gi|212223917|ref|YP_002307153.1| - 0.043 14.1 0.0 0.083 13.1 0.0 1.5 1 0 0 1 1 1 0 AAA domain cobW PF02492.19 gi|212223917|ref|YP_002307153.1| - 0.046 13.3 0.1 0.079 12.5 0.1 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain SRP54 PF00448.22 gi|212223917|ref|YP_002307153.1| - 0.051 13.2 0.1 0.1 12.2 0.1 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain NB-ARC PF00931.22 gi|212223917|ref|YP_002307153.1| - 0.055 12.7 0.0 0.066 12.4 0.0 1.5 1 1 0 1 1 1 0 NB-ARC domain G-alpha PF00503.20 gi|212223917|ref|YP_002307153.1| - 0.078 12.1 0.0 0.078 12.1 0.0 1.2 1 0 0 1 1 1 0 G-protein alpha subunit AAA_19 PF13245.6 gi|212223917|ref|YP_002307153.1| - 0.079 13.3 0.0 0.18 12.2 0.0 1.5 1 0 0 1 1 1 0 AAA domain IstB_IS21 PF01695.17 gi|212223917|ref|YP_002307153.1| - 0.13 12.0 0.0 1.1 9.0 0.0 2.0 2 0 0 2 2 2 0 IstB-like ATP binding protein SbcCD_C PF13558.6 gi|212223917|ref|YP_002307153.1| - 0.15 12.3 0.1 1.8 8.8 0.1 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_24 PF13479.6 gi|212223917|ref|YP_002307153.1| - 0.16 11.7 0.0 0.26 11.0 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.6 gi|212223917|ref|YP_002307153.1| - 0.19 11.9 0.0 0.51 10.5 0.0 1.7 2 0 0 2 2 2 0 AAA domain ABC-3 PF00950.17 gi|212223918|ref|YP_002307154.1| - 7.6e-26 91.2 32.5 9.7e-26 90.8 32.5 1.0 1 0 0 1 1 1 1 ABC 3 transport family FecCD PF01032.18 gi|212223918|ref|YP_002307154.1| - 2.3e-06 26.8 29.9 2.3e-06 26.8 29.9 1.4 1 1 0 1 1 1 1 FecCD transport family RNase_HII PF01351.18 gi|212223919|ref|YP_002307155.1| - 1.5e-51 175.0 0.0 1.9e-51 174.7 0.0 1.1 1 0 0 1 1 1 1 Ribonuclease HII GT87 PF09594.10 gi|212223920|ref|YP_002307156.1| - 0.0025 17.6 19.0 0.0025 17.6 19.0 2.2 1 1 1 2 2 2 1 Glycosyltransferase family 87 PMT PF02366.18 gi|212223920|ref|YP_002307156.1| - 2.1 7.8 21.0 5.4 6.5 11.6 3.5 2 1 1 3 3 3 0 Dolichyl-phosphate-mannose-protein mannosyltransferase Methyltransf_31 PF13847.6 gi|212223921|ref|YP_002307157.1| - 7.7e-09 35.5 0.0 1.5e-08 34.6 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|212223921|ref|YP_002307157.1| - 3e-08 34.2 0.0 2.8e-07 31.2 0.0 2.3 3 0 0 3 3 2 1 Methyltransferase domain Methyltransf_15 PF09445.10 gi|212223921|ref|YP_002307157.1| - 8.7e-07 28.7 0.0 1.3e-06 28.1 0.0 1.3 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_11 PF08241.12 gi|212223921|ref|YP_002307157.1| - 1.9e-05 25.2 0.0 0.00034 21.2 0.0 2.5 2 0 0 2 2 2 1 Methyltransferase domain PrmA PF06325.13 gi|212223921|ref|YP_002307157.1| - 0.0002 20.9 0.0 0.0003 20.3 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) MTS PF05175.14 gi|212223921|ref|YP_002307157.1| - 0.0006 19.4 0.0 0.0011 18.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_23 PF13489.6 gi|212223921|ref|YP_002307157.1| - 0.0018 18.1 0.0 0.003 17.4 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.18 gi|212223921|ref|YP_002307157.1| - 0.0019 17.9 0.0 0.0061 16.3 0.0 1.8 2 0 0 2 2 2 1 Putative RNA methylase family UPF0020 Methyltransf_18 PF12847.7 gi|212223921|ref|YP_002307157.1| - 0.0029 17.5 0.0 0.0054 16.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|212223921|ref|YP_002307157.1| - 0.0054 16.1 0.0 0.0091 15.4 0.0 1.3 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.12 gi|212223921|ref|YP_002307157.1| - 0.016 15.9 0.0 0.049 14.4 0.0 1.9 2 0 0 2 2 2 0 Methyltransferase domain AdoMet_MTase PF07757.13 gi|212223921|ref|YP_002307157.1| - 0.07 13.5 0.0 0.16 12.3 0.0 1.6 1 0 0 1 1 1 0 Predicted AdoMet-dependent methyltransferase Methyltransf_4 PF02390.17 gi|212223921|ref|YP_002307157.1| - 0.09 12.2 0.0 0.16 11.4 0.0 1.4 1 0 0 1 1 1 0 Putative methyltransferase Met_10 PF02475.16 gi|212223921|ref|YP_002307157.1| - 0.11 12.3 0.0 0.19 11.5 0.0 1.3 1 0 0 1 1 1 0 Met-10+ like-protein CmcI PF04989.12 gi|212223921|ref|YP_002307157.1| - 0.16 11.7 0.0 0.27 10.9 0.0 1.4 1 0 0 1 1 1 0 Cephalosporin hydroxylase Methyltransf_32 PF13679.6 gi|212223921|ref|YP_002307157.1| - 0.25 11.3 0.0 0.43 10.5 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain SIS PF01380.22 gi|212223923|ref|YP_002307159.1| - 2.3e-59 198.9 1.8 2.5e-35 121.2 2.0 2.3 2 0 0 2 2 2 2 SIS domain GATase_6 PF13522.6 gi|212223923|ref|YP_002307159.1| - 9.4e-22 77.7 0.0 2.1e-21 76.5 0.0 1.6 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_7 PF13537.6 gi|212223923|ref|YP_002307159.1| - 9e-19 67.6 0.0 1.9e-18 66.6 0.0 1.6 1 0 0 1 1 1 1 Glutamine amidotransferase domain SIS_2 PF13580.6 gi|212223923|ref|YP_002307159.1| - 0.00048 20.2 0.5 0.017 15.1 0.1 2.6 2 0 0 2 2 2 1 SIS domain GATase_4 PF13230.6 gi|212223923|ref|YP_002307159.1| - 0.019 13.9 0.0 0.049 12.5 0.0 1.6 2 0 0 2 2 2 0 Glutamine amidotransferases class-II OST_P2 PF18235.1 gi|212223924|ref|YP_002307160.1| - 3.9e-64 214.5 2.2 1.2e-63 212.9 1.8 2.0 2 0 0 2 2 2 1 Oligosaccharyltransferase Peripheral 2 domain OST_IS PF18246.1 gi|212223924|ref|YP_002307160.1| - 3.8e-09 36.7 3.8 9.4e-09 35.5 3.8 1.7 1 0 0 1 1 1 1 Oligosaccharyltransferase Insert domain STT3 PF02516.14 gi|212223924|ref|YP_002307160.1| - 7.7e-08 31.7 25.9 1.7e-07 30.6 25.9 1.5 1 0 0 1 1 1 1 Oligosaccharyl transferase STT3 subunit PMT_2 PF13231.6 gi|212223924|ref|YP_002307160.1| - 4e-05 23.9 15.4 4e-05 23.9 15.4 3.9 1 1 2 3 3 3 1 Dolichyl-phosphate-mannose-protein mannosyltransferase S4 PF01479.25 gi|212223924|ref|YP_002307160.1| - 0.018 14.8 0.1 0.63 9.8 0.0 2.4 2 0 0 2 2 2 0 S4 domain ParBc PF02195.18 gi|212223925|ref|YP_002307161.1| - 1.3e-05 25.4 0.0 2e-05 24.8 0.0 1.3 1 0 0 1 1 1 1 ParB-like nuclease domain ParBc_2 PF08857.11 gi|212223925|ref|YP_002307161.1| - 0.014 15.5 0.0 0.014 15.5 0.0 1.1 1 0 0 1 1 1 0 Putative ParB-like nuclease Methyltransf_11 PF08241.12 gi|212223926|ref|YP_002307162.1| - 1.2e-27 96.3 0.0 3.6e-27 94.9 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|212223926|ref|YP_002307162.1| - 6.3e-24 84.5 0.0 1e-23 83.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|212223926|ref|YP_002307162.1| - 2e-19 70.0 0.0 2.5e-19 69.7 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|212223926|ref|YP_002307162.1| - 6.4e-17 61.7 0.0 8.1e-17 61.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|212223926|ref|YP_002307162.1| - 4.4e-13 49.8 0.0 8.6e-13 48.9 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|212223926|ref|YP_002307162.1| - 5.7e-13 48.7 0.0 1e-12 47.9 0.0 1.4 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family MetW PF07021.12 gi|212223926|ref|YP_002307162.1| - 2.5e-11 43.5 0.0 3.4e-11 43.1 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW TehB PF03848.14 gi|212223926|ref|YP_002307162.1| - 7e-09 35.4 0.0 9.5e-09 34.9 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB Methyltransf_29 PF03141.16 gi|212223926|ref|YP_002307162.1| - 3.8e-08 32.4 0.0 5.1e-08 31.9 0.0 1.1 1 0 0 1 1 1 1 Putative S-adenosyl-L-methionine-dependent methyltransferase DREV PF05219.12 gi|212223926|ref|YP_002307162.1| - 1.8e-05 24.0 0.0 2.4e-05 23.6 0.0 1.2 1 0 0 1 1 1 1 DREV methyltransferase MTS PF05175.14 gi|212223926|ref|YP_002307162.1| - 5.2e-05 22.9 0.0 0.00015 21.4 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase small domain Methyltransf_8 PF05148.15 gi|212223926|ref|YP_002307162.1| - 9.9e-05 22.3 0.0 0.00017 21.5 0.0 1.4 1 1 0 1 1 1 1 Hypothetical methyltransferase CMAS PF02353.20 gi|212223926|ref|YP_002307162.1| - 0.00038 19.8 0.0 0.001 18.4 0.0 1.6 1 1 0 1 1 1 1 Mycolic acid cyclopropane synthetase FtsJ PF01728.19 gi|212223926|ref|YP_002307162.1| - 0.0016 18.6 0.0 0.026 14.6 0.0 2.0 1 1 1 2 2 2 1 FtsJ-like methyltransferase NodS PF05401.11 gi|212223926|ref|YP_002307162.1| - 0.0051 16.4 0.0 0.012 15.2 0.0 1.5 1 1 0 1 1 1 1 Nodulation protein S (NodS) Methyltransf_9 PF08003.11 gi|212223926|ref|YP_002307162.1| - 0.01 14.8 0.0 0.014 14.4 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) tRNA_U5-meth_tr PF05958.11 gi|212223926|ref|YP_002307162.1| - 0.028 13.4 0.0 0.037 13.0 0.0 1.1 1 0 0 1 1 1 0 tRNA (Uracil-5-)-methyltransferase Methyltransf_2 PF00891.18 gi|212223926|ref|YP_002307162.1| - 0.17 11.1 0.0 0.25 10.6 0.0 1.4 1 1 0 1 1 1 0 O-methyltransferase domain CheR PF01739.18 gi|212223926|ref|YP_002307162.1| - 0.21 11.0 0.0 1.3 8.4 0.0 2.0 1 1 1 2 2 2 0 CheR methyltransferase, SAM binding domain Thiamine_BP PF01910.17 gi|212223927|ref|YP_002307163.1| - 1.4e-30 105.0 0.0 1.6e-30 104.9 0.0 1.0 1 0 0 1 1 1 1 Thiamine-binding protein Ykof PF07615.11 gi|212223927|ref|YP_002307163.1| - 0.015 15.8 0.0 0.018 15.5 0.0 1.2 1 0 0 1 1 1 0 YKOF-related Family Glyco_transf_6 PF03414.13 gi|212223927|ref|YP_002307163.1| - 0.019 13.7 0.0 0.022 13.6 0.0 1.1 1 0 0 1 1 1 0 Glycosyltransferase family 6 ThiS PF02597.20 gi|212223928|ref|YP_002307164.1| - 1.3e-17 64.2 0.1 2.2e-17 63.5 0.1 1.4 1 1 0 1 1 1 1 ThiS family TGS PF02824.21 gi|212223928|ref|YP_002307164.1| - 0.026 14.5 0.1 0.045 13.8 0.1 1.4 1 0 0 1 1 1 0 TGS domain DUF3038 PF11237.8 gi|212223928|ref|YP_002307164.1| - 0.051 13.6 0.0 0.057 13.5 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3038) Chordopox_G2 PF05796.12 gi|212223928|ref|YP_002307164.1| - 0.053 13.0 0.0 0.075 12.5 0.0 1.3 1 1 0 1 1 1 0 Chordopoxvirus protein G2 ADK PF00406.22 gi|212223929|ref|YP_002307165.1| - 5.1e-43 146.8 0.0 6.6e-43 146.4 0.0 1.1 1 0 0 1 1 1 1 Adenylate kinase AAA_17 PF13207.6 gi|212223929|ref|YP_002307165.1| - 2.3e-20 73.4 0.0 4.5e-20 72.5 0.0 1.4 2 0 0 2 2 1 1 AAA domain ADK_lid PF05191.14 gi|212223929|ref|YP_002307165.1| - 1.4e-18 66.5 3.6 2.3e-18 65.9 3.6 1.3 1 0 0 1 1 1 1 Adenylate kinase, active site lid AAA_33 PF13671.6 gi|212223929|ref|YP_002307165.1| - 2.2e-06 27.9 0.0 8.5e-06 26.0 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA_18 PF13238.6 gi|212223929|ref|YP_002307165.1| - 4.1e-06 27.4 0.2 1.2e-05 25.9 0.0 1.9 2 1 0 2 2 2 1 AAA domain Cytidylate_kin PF02224.18 gi|212223929|ref|YP_002307165.1| - 5e-05 23.1 0.0 9.2e-05 22.3 0.0 1.4 1 0 0 1 1 1 1 Cytidylate kinase zf-C4_Topoisom PF01396.19 gi|212223929|ref|YP_002307165.1| - 0.0016 18.2 2.2 0.69 9.7 0.1 2.7 2 0 0 2 2 2 2 Topoisomerase DNA binding C4 zinc finger Thymidylate_kin PF02223.17 gi|212223929|ref|YP_002307165.1| - 0.0035 17.0 0.0 0.031 14.0 0.0 2.1 2 0 0 2 2 2 1 Thymidylate kinase Zeta_toxin PF06414.12 gi|212223929|ref|YP_002307165.1| - 0.0058 15.9 0.0 0.0093 15.3 0.0 1.4 1 1 0 1 1 1 1 Zeta toxin AAA_22 PF13401.6 gi|212223929|ref|YP_002307165.1| - 0.01 16.1 0.0 0.029 14.7 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_28 PF13521.6 gi|212223929|ref|YP_002307165.1| - 0.019 15.2 0.0 0.034 14.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain Prok-RING_1 PF14446.6 gi|212223929|ref|YP_002307165.1| - 0.021 14.8 2.6 0.26 11.3 0.3 2.4 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 AAA_24 PF13479.6 gi|212223929|ref|YP_002307165.1| - 0.039 13.7 0.0 0.11 12.2 0.1 1.8 2 1 0 2 2 2 0 AAA domain A2L_zn_ribbon PF08792.10 gi|212223929|ref|YP_002307165.1| - 0.049 13.4 0.6 1.6 8.5 0.0 2.8 3 0 0 3 3 3 0 A2L zinc ribbon domain DZR PF12773.7 gi|212223929|ref|YP_002307165.1| - 0.053 13.6 0.2 0.095 12.7 0.2 1.4 1 0 0 1 1 1 0 Double zinc ribbon AAA PF00004.29 gi|212223929|ref|YP_002307165.1| - 0.069 13.6 0.0 0.11 12.9 0.0 1.4 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.14 gi|212223929|ref|YP_002307165.1| - 0.11 12.5 0.0 0.18 11.8 0.0 1.4 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) zf-ribbon_3 PF13248.6 gi|212223929|ref|YP_002307165.1| - 0.11 11.9 1.8 0.97 8.9 0.2 2.2 2 0 0 2 2 2 0 zinc-ribbon domain ABC_tran PF00005.27 gi|212223929|ref|YP_002307165.1| - 0.11 13.0 0.0 0.13 12.7 0.0 1.3 1 0 0 1 1 1 0 ABC transporter Hydin_ADK PF17213.3 gi|212223929|ref|YP_002307165.1| - 0.13 12.5 0.0 0.23 11.7 0.0 1.4 1 0 0 1 1 1 0 Hydin Adenylate kinase-like domain AAA_16 PF13191.6 gi|212223929|ref|YP_002307165.1| - 0.13 12.6 0.0 0.38 11.1 0.0 1.8 2 1 0 2 2 2 0 AAA ATPase domain zf-C2HC5 PF06221.13 gi|212223929|ref|YP_002307165.1| - 0.15 12.1 0.1 0.23 11.5 0.1 1.3 1 0 0 1 1 1 0 Putative zinc finger motif, C2HC5-type AAA_29 PF13555.6 gi|212223929|ref|YP_002307165.1| - 0.18 11.6 0.0 0.3 10.8 0.0 1.3 1 0 0 1 1 1 0 P-loop containing region of AAA domain DUF2258 PF10015.9 gi|212223930|ref|YP_002307166.1| - 2.1e-22 79.0 0.8 4.9e-22 77.9 0.0 1.9 2 1 0 2 2 2 1 Uncharacterized protein conserved in archaea (DUF2258) APG6_N PF17675.1 gi|212223930|ref|YP_002307166.1| - 0.0012 19.4 9.2 0.0015 19.1 9.2 1.2 1 0 0 1 1 1 1 Apg6 coiled-coil region DUF1967 PF09269.11 gi|212223930|ref|YP_002307166.1| - 0.0039 17.1 0.4 0.011 15.7 0.1 2.0 1 1 1 2 2 2 1 Domain of unknown function (DUF1967) DUF5344 PF17279.2 gi|212223930|ref|YP_002307166.1| - 0.0044 17.6 1.5 0.0084 16.7 1.5 1.5 1 0 0 1 1 1 1 Family of unknown function (DUF5344) AAA_23 PF13476.6 gi|212223930|ref|YP_002307166.1| - 0.013 16.1 3.2 0.014 16.0 3.2 1.1 1 0 0 1 1 1 0 AAA domain UPF0242 PF06785.11 gi|212223930|ref|YP_002307166.1| - 0.019 15.1 6.9 0.024 14.8 6.9 1.2 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0242) N-terminus Occludin_ELL PF07303.13 gi|212223930|ref|YP_002307166.1| - 0.21 12.4 4.9 0.35 11.6 4.9 1.3 1 0 0 1 1 1 0 Occludin homology domain DUF2203 PF09969.9 gi|212223930|ref|YP_002307166.1| - 0.28 11.9 5.8 9.2 7.0 3.7 2.2 1 1 1 2 2 2 0 Uncharacterized conserved protein (DUF2203) Baculo_F PF12259.8 gi|212223930|ref|YP_002307166.1| - 0.52 8.8 2.6 0.66 8.4 2.6 1.1 1 0 0 1 1 1 0 Baculovirus F protein Spc7 PF08317.11 gi|212223930|ref|YP_002307166.1| - 0.69 8.7 12.6 0.91 8.3 12.6 1.2 1 0 0 1 1 1 0 Spc7 kinetochore protein Laminin_II PF06009.12 gi|212223930|ref|YP_002307166.1| - 0.7 9.9 6.5 0.32 11.0 3.7 1.8 2 0 0 2 2 2 0 Laminin Domain II DUF1664 PF07889.12 gi|212223930|ref|YP_002307166.1| - 1.4 9.0 4.4 2.3 8.3 4.4 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1664) SlyX PF04102.12 gi|212223930|ref|YP_002307166.1| - 5.6 7.6 11.7 8.5 7.1 9.8 2.0 2 0 0 2 2 2 0 SlyX Methyltrn_RNA_2 PF04013.12 gi|212223931|ref|YP_002307167.1| - 4.2e-47 160.4 0.0 4.7e-47 160.2 0.0 1.0 1 0 0 1 1 1 1 Putative SAM-dependent RNA methyltransferase AA_permease_2 PF13520.6 gi|212223932|ref|YP_002307168.1| - 4.7e-51 174.0 45.2 5.9e-51 173.6 45.2 1.1 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.21 gi|212223932|ref|YP_002307168.1| - 1.1e-44 152.9 41.1 1.4e-44 152.5 41.1 1.1 1 0 0 1 1 1 1 Amino acid permease Usp PF00582.26 gi|212223932|ref|YP_002307168.1| - 9.4e-32 110.4 3.2 2.5e-20 73.4 0.1 3.2 2 1 1 3 3 3 3 Universal stress protein family AA_permease_C PF13906.6 gi|212223932|ref|YP_002307168.1| - 0.00018 21.5 9.1 0.00018 21.5 9.1 3.7 4 0 0 4 4 4 1 C-terminus of AA_permease PK PF00224.21 gi|212223934|ref|YP_002307170.1| - 1.6e-118 395.6 5.4 2.1e-118 395.2 5.4 1.1 1 0 0 1 1 1 1 Pyruvate kinase, barrel domain PK_C PF02887.16 gi|212223934|ref|YP_002307170.1| - 2.7e-24 85.7 0.0 7e-24 84.3 0.0 1.8 1 0 0 1 1 1 1 Pyruvate kinase, alpha/beta domain HpcH_HpaI PF03328.14 gi|212223934|ref|YP_002307170.1| - 4.4e-05 22.7 0.8 0.00022 20.4 0.1 2.0 2 0 0 2 2 2 1 HpcH/HpaI aldolase/citrate lyase family IMPDH PF00478.25 gi|212223934|ref|YP_002307170.1| - 0.0031 16.6 0.6 0.014 14.4 0.0 2.2 3 1 0 3 3 3 1 IMP dehydrogenase / GMP reductase domain Peptidase_C25 PF01364.18 gi|212223934|ref|YP_002307170.1| - 0.024 13.8 0.0 0.038 13.2 0.0 1.4 2 0 0 2 2 2 0 Peptidase family C25 AhpC-TSA PF00578.21 gi|212223935|ref|YP_002307171.1| - 1.6e-33 115.3 0.0 2e-33 114.9 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|212223935|ref|YP_002307171.1| - 1.1e-18 67.4 0.0 1.3e-18 67.1 0.0 1.0 1 0 0 1 1 1 1 Redoxin AhpC-TSA_2 PF13911.6 gi|212223935|ref|YP_002307171.1| - 3.5e-07 30.3 0.0 1.4e-05 25.2 0.0 2.1 1 1 0 2 2 2 1 AhpC/TSA antioxidant enzyme DUF899 PF05988.12 gi|212223935|ref|YP_002307171.1| - 0.00018 21.1 0.0 0.0002 20.9 0.0 1.1 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF899) Radical_SAM PF04055.21 gi|212223938|ref|YP_002307174.1| - 1.1e-19 71.4 0.1 4.6e-19 69.4 0.0 2.0 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|212223938|ref|YP_002307174.1| - 8.1e-13 48.8 0.0 1.7e-12 47.8 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|212223938|ref|YP_002307174.1| - 2.1e-07 31.1 0.0 2.1e-07 31.1 0.0 1.9 3 0 0 3 3 3 1 4Fe-4S single cluster domain Peptidase_M54 PF07998.11 gi|212223939|ref|YP_002307175.1| - 3.6e-46 157.6 0.2 5.2e-46 157.1 0.2 1.2 1 1 0 1 1 1 1 Peptidase family M54 Peptidase_M10 PF00413.24 gi|212223939|ref|YP_002307175.1| - 0.0019 18.1 0.0 0.002 18.0 0.0 1.2 1 0 0 1 1 1 1 Matrixin Metallopep PF12044.8 gi|212223939|ref|YP_002307175.1| - 0.0097 14.6 0.1 0.014 14.0 0.1 1.2 1 0 0 1 1 1 1 Putative peptidase family Reprolysin_3 PF13582.6 gi|212223939|ref|YP_002307175.1| - 0.059 13.9 0.2 0.094 13.2 0.2 1.3 1 0 0 1 1 1 0 Metallo-peptidase family M12B Reprolysin-like Reprolysin_4 PF13583.6 gi|212223939|ref|YP_002307175.1| - 0.064 12.9 0.2 0.15 11.7 0.1 1.6 2 0 0 2 2 2 0 Metallo-peptidase family M12B Reprolysin-like Reprolysin_2 PF13574.6 gi|212223939|ref|YP_002307175.1| - 0.11 12.4 0.0 0.36 10.7 0.0 1.8 2 0 0 2 2 2 0 Metallo-peptidase family M12B Reprolysin-like Reprolysin_5 PF13688.6 gi|212223939|ref|YP_002307175.1| - 0.11 12.6 0.4 0.18 11.9 0.1 1.5 2 0 0 2 2 2 0 Metallo-peptidase family M12 Peptidase_M66 PF10462.9 gi|212223939|ref|YP_002307175.1| - 0.12 11.3 0.3 0.17 10.8 0.3 1.1 1 0 0 1 1 1 0 Peptidase M66 DUF4953 PF16313.5 gi|212223939|ref|YP_002307175.1| - 0.15 11.2 0.0 0.23 10.6 0.0 1.3 1 0 0 1 1 1 0 Met-zincin Prenyltrans PF00432.21 gi|212223940|ref|YP_002307176.1| - 4.1e-07 29.6 6.5 0.48 10.2 0.0 6.1 7 0 0 7 7 7 3 Prenyltransferase and squalene oxidase repeat Ovate PF04844.13 gi|212223940|ref|YP_002307176.1| - 0.088 12.8 0.0 0.15 12.1 0.0 1.3 1 0 0 1 1 1 0 Transcriptional repressor, ovate YtxH PF12732.7 gi|212223941|ref|YP_002307177.1| - 0.077 13.5 0.8 4.3 7.9 0.5 2.3 2 0 0 2 2 2 0 YtxH-like protein Spt4 PF06093.13 gi|212223941|ref|YP_002307177.1| - 0.14 12.3 0.3 11 6.2 0.1 2.3 2 0 0 2 2 2 0 Spt4/RpoE2 zinc finger RasGAP_C PF03836.15 gi|212223942|ref|YP_002307178.1| - 0.0028 17.8 3.4 0.0043 17.2 3.4 1.2 1 0 0 1 1 1 1 RasGAP C-terminus DUF2203 PF09969.9 gi|212223942|ref|YP_002307178.1| - 0.1 13.3 2.7 0.12 13.1 2.7 1.1 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2203) PRTase_1 PF11202.8 gi|212223942|ref|YP_002307178.1| - 0.14 11.4 0.3 0.17 11.1 0.3 1.1 1 0 0 1 1 1 0 Phosphoribosyl transferase (PRTase) ABC1 PF03109.16 gi|212223942|ref|YP_002307178.1| - 0.22 11.7 1.5 0.28 11.3 1.5 1.2 1 0 0 1 1 1 0 ABC1 family KIF1B PF12423.8 gi|212223942|ref|YP_002307178.1| - 0.24 11.8 3.7 0.44 11.0 3.7 1.5 1 1 0 1 1 1 0 Kinesin protein 1B CpxA_peri PF16527.5 gi|212223942|ref|YP_002307178.1| - 0.3 11.5 4.4 2.7 8.4 4.4 2.0 1 1 0 1 1 1 0 Two-component sensor protein CpxA, periplasmic domain TetR_C_24 PF17932.1 gi|212223942|ref|YP_002307178.1| - 0.73 10.1 5.4 0.48 10.7 0.5 2.2 1 1 1 2 2 2 0 Tetracyclin repressor-like, C-terminal domain YabA PF06156.13 gi|212223942|ref|YP_002307178.1| - 1.1 10.0 6.4 0.83 10.3 3.8 1.9 1 1 1 2 2 2 0 Initiation control protein YabA APG6_N PF17675.1 gi|212223942|ref|YP_002307178.1| - 5.5 7.5 15.2 6.3 7.3 7.0 2.1 1 1 1 2 2 2 0 Apg6 coiled-coil region Macoilin PF09726.9 gi|212223942|ref|YP_002307178.1| - 6.6 5.2 11.6 8.3 4.8 11.6 1.2 1 0 0 1 1 1 0 Macoilin family DUF4349 PF14257.6 gi|212223942|ref|YP_002307178.1| - 9.7 5.6 8.1 4.4 6.7 0.8 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4349) RHH_1 PF01402.21 gi|212223943|ref|YP_002307179.1| - 0.00035 20.4 1.6 0.001 18.9 0.1 2.4 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family HTH_32 PF13565.6 gi|212223943|ref|YP_002307179.1| - 0.034 14.8 0.0 0.062 13.9 0.0 1.5 1 0 0 1 1 1 0 Homeodomain-like domain Val_tRNA-synt_C PF10458.9 gi|212223943|ref|YP_002307179.1| - 0.046 14.0 3.9 0.14 12.5 0.3 2.3 2 0 0 2 2 2 0 Valyl tRNA synthetase tRNA binding arm ABC_tran_CTD PF16326.5 gi|212223943|ref|YP_002307179.1| - 0.052 13.8 0.1 0.052 13.8 0.1 2.1 3 0 0 3 3 3 0 ABC transporter C-terminal domain GAS PF13851.6 gi|212223943|ref|YP_002307179.1| - 0.053 12.9 0.4 0.081 12.3 0.4 1.3 1 0 0 1 1 1 0 Growth-arrest specific micro-tubule binding BRE1 PF08647.11 gi|212223943|ref|YP_002307179.1| - 0.064 13.3 0.4 9.1 6.4 0.0 2.1 2 0 0 2 2 2 0 BRE1 E3 ubiquitin ligase RHH_5 PF07878.11 gi|212223943|ref|YP_002307179.1| - 0.15 12.0 0.1 0.36 10.8 0.1 1.6 1 0 0 1 1 1 0 CopG-like RHH_1 or ribbon-helix-helix domain, RHH_5 PhetRS_B1 PF18262.1 gi|212223943|ref|YP_002307179.1| - 0.59 10.4 2.4 2.7 8.3 0.0 2.6 3 0 0 3 3 3 0 Phe-tRNA synthetase beta subunit B1 domain CRCB PF02537.15 gi|212223944|ref|YP_002307180.1| - 4.6e-25 87.7 6.5 5.7e-25 87.5 6.5 1.0 1 0 0 1 1 1 1 CrcB-like protein, Camphor Resistance (CrcB) DUF190 PF02641.15 gi|212223945|ref|YP_002307181.1| - 1.4e-38 131.1 0.2 3.3e-38 129.9 0.2 1.6 1 1 1 2 2 2 1 Uncharacterized ACR, COG1993 DFP PF04127.15 gi|212223947|ref|YP_002307183.1| - 3.5e-57 193.2 3.9 1e-55 188.5 0.9 2.2 2 0 0 2 2 2 2 DNA / pantothenate metabolism flavoprotein Flavoprotein PF02441.19 gi|212223947|ref|YP_002307183.1| - 7.2e-42 142.8 7.1 2.7e-41 141.0 2.6 2.5 3 0 0 3 3 3 1 Flavoprotein SBP_bac_3 PF00497.20 gi|212223947|ref|YP_002307183.1| - 0.003 17.0 0.9 0.026 13.9 0.9 2.1 1 1 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 Usp PF00582.26 gi|212223947|ref|YP_002307183.1| - 0.0076 16.8 2.3 0.043 14.3 0.6 2.4 2 0 0 2 2 2 1 Universal stress protein family GST_C PF00043.25 gi|212223947|ref|YP_002307183.1| - 0.012 15.8 0.3 7 6.9 0.0 3.1 3 0 0 3 3 3 0 Glutathione S-transferase, C-terminal domain PTS_IIB PF02302.17 gi|212223947|ref|YP_002307183.1| - 0.018 15.7 2.9 0.81 10.4 0.1 3.0 3 0 0 3 3 3 0 PTS system, Lactose/Cellobiose specific IIB subunit MS_channel PF00924.18 gi|212223948|ref|YP_002307184.1| - 5.4e-49 166.5 0.9 6.4e-49 166.3 0.9 1.1 1 0 0 1 1 1 1 Mechanosensitive ion channel PTS_EIIC PF02378.18 gi|212223948|ref|YP_002307184.1| - 0.016 14.3 9.8 0.019 14.0 9.8 1.2 1 0 0 1 1 1 0 Phosphotransferase system, EIIC DUF2368 PF10166.9 gi|212223948|ref|YP_002307184.1| - 0.13 11.9 0.0 0.34 10.5 0.0 1.6 2 0 0 2 2 2 0 Uncharacterised conserved protein (DUF2368) CbiA PF01656.23 gi|212223949|ref|YP_002307185.1| - 4.2e-11 43.0 0.0 7e-11 42.3 0.0 1.4 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|212223949|ref|YP_002307185.1| - 3.4e-10 40.1 0.0 6.5e-10 39.2 0.0 1.3 1 1 0 1 1 1 1 AAA domain ParA PF10609.9 gi|212223949|ref|YP_002307185.1| - 2.1e-06 27.4 0.0 0.00084 18.9 0.0 2.2 2 0 0 2 2 2 2 NUBPL iron-transfer P-loop NTPase CBP_BcsQ PF06564.12 gi|212223949|ref|YP_002307185.1| - 5.2e-05 22.8 0.0 8.2e-05 22.2 0.0 1.3 1 0 0 1 1 1 1 Cellulose biosynthesis protein BcsQ AAA_25 PF13481.6 gi|212223949|ref|YP_002307185.1| - 0.0036 16.9 0.1 0.4 10.2 0.2 2.2 2 0 0 2 2 2 1 AAA domain SRP54 PF00448.22 gi|212223949|ref|YP_002307185.1| - 0.016 14.8 0.1 0.028 14.1 0.1 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain APS_kinase PF01583.20 gi|212223949|ref|YP_002307185.1| - 0.043 13.7 0.0 0.069 13.1 0.0 1.2 1 0 0 1 1 1 0 Adenylylsulphate kinase ArsA_ATPase PF02374.15 gi|212223949|ref|YP_002307185.1| - 0.2 10.8 0.0 0.81 8.8 0.0 1.9 2 0 0 2 2 2 0 Anion-transporting ATPase Asp_Glu_race PF01177.22 gi|212223950|ref|YP_002307186.1| - 1.1e-57 195.5 0.0 1.2e-57 195.3 0.0 1.0 1 0 0 1 1 1 1 Asp/Glu/Hydantoin racemase Isochorismatase PF00857.20 gi|212223950|ref|YP_002307186.1| - 0.0024 18.1 0.0 0.028 14.6 0.0 2.1 1 1 1 2 2 2 1 Isochorismatase family LpxI_N PF17930.1 gi|212223950|ref|YP_002307186.1| - 0.0032 17.4 0.3 0.01 15.8 0.3 2.0 1 1 1 2 2 2 1 LpxI N-terminal domain Amdase PF17645.1 gi|212223950|ref|YP_002307186.1| - 0.028 14.0 0.1 0.2 11.3 0.1 2.1 1 1 0 1 1 1 0 Arylmalonate decarboxylase PTA_PTB PF01515.19 gi|212223950|ref|YP_002307186.1| - 0.072 12.4 0.1 0.16 11.3 0.1 1.5 1 1 0 1 1 1 0 Phosphate acetyl/butaryl transferase UPF0180 PF03698.13 gi|212223950|ref|YP_002307186.1| - 0.075 13.2 0.0 0.85 9.8 0.0 2.4 2 1 0 2 2 2 0 Uncharacterised protein family (UPF0180) Radical_SAM PF04055.21 gi|212223950|ref|YP_002307186.1| - 0.1 12.9 0.2 5.1 7.4 0.0 2.6 1 1 0 3 3 3 0 Radical SAM superfamily Pantoate_transf PF02548.15 gi|212223950|ref|YP_002307186.1| - 0.11 11.9 0.1 0.18 11.2 0.1 1.3 1 0 0 1 1 1 0 Ketopantoate hydroxymethyltransferase ALAD PF00490.21 gi|212223950|ref|YP_002307186.1| - 0.16 11.1 0.3 2.4 7.2 0.1 2.1 1 1 1 2 2 2 0 Delta-aminolevulinic acid dehydratase MazG PF03819.17 gi|212223951|ref|YP_002307187.1| - 5.7e-14 52.0 1.7 8.1e-14 51.6 0.4 1.7 1 1 1 2 2 2 1 MazG nucleotide pyrophosphohydrolase domain MazG-like PF12643.7 gi|212223951|ref|YP_002307187.1| - 3.1e-05 24.1 0.1 4.5e-05 23.6 0.1 1.2 1 0 0 1 1 1 1 MazG-like family PRA-PH PF01503.17 gi|212223951|ref|YP_002307187.1| - 0.00015 22.2 1.1 0.00018 21.9 1.1 1.3 1 1 0 1 1 1 1 Phosphoribosyl-ATP pyrophosphohydrolase MFS_1 PF07690.16 gi|212223952|ref|YP_002307188.1| - 5.6e-15 55.1 27.7 5.6e-15 55.1 27.7 2.0 1 1 1 2 2 2 1 Major Facilitator Superfamily MFS_1_like PF12832.7 gi|212223952|ref|YP_002307188.1| - 2.7e-07 29.8 23.5 1.8e-06 27.1 22.5 2.3 1 1 0 1 1 1 1 MFS_1 like family PmbA_TldD PF01523.16 gi|212223953|ref|YP_002307189.1| - 4.6e-59 200.6 0.1 7.3e-59 199.9 0.1 1.3 1 0 0 1 1 1 1 Putative modulator of DNA gyrase PmbA_TldD PF01523.16 gi|212223954|ref|YP_002307190.1| - 1.2e-50 173.0 0.7 1.6e-50 172.6 0.7 1.2 1 0 0 1 1 1 1 Putative modulator of DNA gyrase Peptidase_C92 PF05708.12 gi|212223955|ref|YP_002307191.1| - 1.6e-30 106.4 0.0 2.2e-30 106.0 0.0 1.1 1 0 0 1 1 1 1 Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family Sugar_tr PF00083.24 gi|212223956|ref|YP_002307192.1| - 8.9e-46 156.7 22.8 1.1e-45 156.3 22.8 1.1 1 0 0 1 1 1 1 Sugar (and other) transporter MFS_1 PF07690.16 gi|212223956|ref|YP_002307192.1| - 7e-44 150.2 62.0 1.2e-35 123.1 32.8 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily OATP PF03137.20 gi|212223956|ref|YP_002307192.1| - 0.44 8.8 10.4 1.9 6.7 4.8 3.0 1 1 0 2 2 2 0 Organic Anion Transporter Polypeptide (OATP) family Sm_multidrug_ex PF06695.11 gi|212223957|ref|YP_002307193.1| - 1e-28 100.4 3.4 1.2e-28 100.1 3.4 1.1 1 0 0 1 1 1 1 Putative small multi-drug export protein PAP2 PF01569.21 gi|212223958|ref|YP_002307194.1| - 1.1e-19 70.6 13.7 1.7e-19 69.9 5.8 2.8 2 1 1 3 3 3 1 PAP2 superfamily PAP2_3 PF14378.6 gi|212223958|ref|YP_002307194.1| - 7.2e-07 29.1 8.5 7.2e-07 29.1 8.5 2.0 2 1 0 2 2 2 1 PAP2 superfamily DUF401 PF04165.12 gi|212223958|ref|YP_002307194.1| - 0.00017 21.1 5.7 0.0002 20.8 5.7 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF401) DUF5080 PF16883.5 gi|212223958|ref|YP_002307194.1| - 0.0022 18.2 3.2 0.004 17.3 3.2 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF5080) ECF_trnsprt PF12822.7 gi|212223958|ref|YP_002307194.1| - 0.0079 16.3 11.2 0.012 15.8 5.7 2.3 1 1 0 2 2 2 1 ECF transporter, substrate-specific component PAP2_C PF14360.6 gi|212223958|ref|YP_002307194.1| - 0.012 16.1 0.5 0.012 16.1 0.5 2.7 3 1 0 3 3 3 0 PAP2 superfamily C-terminal UPF0016 PF01169.19 gi|212223958|ref|YP_002307194.1| - 0.071 13.5 5.1 2.5 8.5 0.4 3.3 2 1 1 3 3 3 0 Uncharacterized protein family UPF0016 ThrE PF06738.12 gi|212223958|ref|YP_002307194.1| - 0.69 9.2 7.1 0.37 10.1 1.2 2.2 1 1 1 2 2 2 0 Putative threonine/serine exporter DUF2085 PF09858.9 gi|212223958|ref|YP_002307194.1| - 0.76 10.3 7.3 0.49 10.9 0.6 2.8 3 0 0 3 3 3 0 Predicted membrane protein (DUF2085) HTH_24 PF13412.6 gi|212223960|ref|YP_002307196.1| - 2.6e-26 90.9 0.5 1.9e-13 49.7 0.1 2.9 2 1 0 2 2 2 2 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|212223960|ref|YP_002307196.1| - 1.5e-20 72.8 0.0 2.3e-09 37.0 0.0 2.2 2 0 0 2 2 2 2 MarR family HTH_20 PF12840.7 gi|212223960|ref|YP_002307196.1| - 8.9e-16 57.7 0.0 5.6e-07 29.5 0.0 2.1 2 0 0 2 2 2 2 Helix-turn-helix domain HTH_5 PF01022.20 gi|212223960|ref|YP_002307196.1| - 1.2e-14 53.9 0.0 9.3e-07 28.6 0.0 2.3 2 0 0 2 2 2 2 Bacterial regulatory protein, arsR family MarR PF01047.22 gi|212223960|ref|YP_002307196.1| - 3.2e-13 49.4 0.0 7.6e-06 25.8 0.0 2.2 2 0 0 2 2 2 2 MarR family HTH_IclR PF09339.10 gi|212223960|ref|YP_002307196.1| - 1.1e-11 44.4 0.0 9.8e-05 22.1 0.0 2.3 2 0 0 2 2 2 2 IclR helix-turn-helix domain HTH_11 PF08279.12 gi|212223960|ref|YP_002307196.1| - 2.1e-08 34.0 0.0 0.00051 19.9 0.0 2.6 2 1 1 3 3 2 2 HTH domain HTH_36 PF13730.6 gi|212223960|ref|YP_002307196.1| - 2.5e-08 33.7 0.0 0.00016 21.6 0.0 2.5 2 0 0 2 2 2 2 Helix-turn-helix domain TrmB PF01978.19 gi|212223960|ref|YP_002307196.1| - 7.6e-08 32.1 0.0 0.0014 18.5 0.0 2.2 2 0 0 2 2 2 2 Sugar-specific transcriptional regulator TrmB B-block_TFIIIC PF04182.12 gi|212223960|ref|YP_002307196.1| - 2.7e-07 30.6 0.1 0.01 16.0 0.0 2.2 2 0 0 2 2 2 2 B-block binding subunit of TFIIIC HTH_Crp_2 PF13545.6 gi|212223960|ref|YP_002307196.1| - 7.4e-07 29.1 0.0 0.00062 19.7 0.0 2.2 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain HTH_27 PF13463.6 gi|212223960|ref|YP_002307196.1| - 1.4e-06 28.7 0.0 0.027 15.0 0.0 2.2 2 0 0 2 2 2 2 Winged helix DNA-binding domain Fe_dep_repress PF01325.19 gi|212223960|ref|YP_002307196.1| - 2.2e-06 27.7 0.0 0.00041 20.5 0.0 2.2 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain DUF4423 PF14394.6 gi|212223960|ref|YP_002307196.1| - 3.5e-06 26.8 0.0 0.016 14.9 0.0 2.1 2 0 0 2 2 2 2 Domain of unknown function (DUF4423) TFIIE_alpha PF02002.17 gi|212223960|ref|YP_002307196.1| - 4.8e-06 26.4 0.2 0.0097 15.8 0.0 2.2 2 0 0 2 2 2 2 TFIIE alpha subunit HTH_28 PF13518.6 gi|212223960|ref|YP_002307196.1| - 8.9e-06 25.7 0.0 0.0012 18.9 0.0 2.4 3 0 0 3 3 2 1 Helix-turn-helix domain Rrf2 PF02082.20 gi|212223960|ref|YP_002307196.1| - 1.3e-05 25.4 0.0 0.056 13.8 0.0 2.2 2 0 0 2 2 2 2 Transcriptional regulator HTH_29 PF13551.6 gi|212223960|ref|YP_002307196.1| - 1.4e-05 25.0 0.0 0.0021 18.1 0.0 2.3 2 0 0 2 2 2 1 Winged helix-turn helix HTH_10 PF04967.12 gi|212223960|ref|YP_002307196.1| - 2.3e-05 24.1 0.0 0.13 12.1 0.0 2.3 2 0 0 2 2 2 2 HTH DNA binding domain HTH_34 PF13601.6 gi|212223960|ref|YP_002307196.1| - 2.9e-05 24.1 0.0 0.0027 17.8 0.0 2.2 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_AsnC-type PF13404.6 gi|212223960|ref|YP_002307196.1| - 3.3e-05 23.6 0.0 0.32 10.9 0.0 2.4 2 0 0 2 2 2 2 AsnC-type helix-turn-helix domain HTH_Mga PF08280.11 gi|212223960|ref|YP_002307196.1| - 3.5e-05 23.7 0.0 0.044 13.8 0.0 2.4 2 0 0 2 2 2 1 M protein trans-acting positive regulator (MGA) HTH domain RPA_C PF08784.11 gi|212223960|ref|YP_002307196.1| - 5.5e-05 23.8 0.0 0.022 15.4 0.0 2.1 2 0 0 2 2 2 1 Replication protein A C terminal FaeA PF04703.12 gi|212223960|ref|YP_002307196.1| - 0.00013 22.3 0.0 0.07 13.5 0.0 2.2 2 0 0 2 2 2 1 FaeA-like protein HTH_23 PF13384.6 gi|212223960|ref|YP_002307196.1| - 0.00014 21.5 0.0 0.00045 19.9 0.0 1.8 2 0 0 2 2 1 1 Homeodomain-like domain RP-C PF03428.13 gi|212223960|ref|YP_002307196.1| - 0.00027 20.7 0.0 0.08 12.6 0.0 2.1 2 0 0 2 2 2 1 Replication protein C N-terminal domain Sigma70_r4 PF04545.16 gi|212223960|ref|YP_002307196.1| - 0.00036 20.0 0.0 0.37 10.4 0.0 2.7 2 1 0 2 2 2 1 Sigma-70, region 4 MerR_1 PF13411.6 gi|212223960|ref|YP_002307196.1| - 0.00038 20.5 0.0 0.59 10.3 0.0 2.5 2 0 0 2 2 2 2 MerR HTH family regulatory protein Sigma70_r4_2 PF08281.12 gi|212223960|ref|YP_002307196.1| - 0.00057 19.5 0.0 0.027 14.1 0.0 2.3 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_WhiA PF02650.14 gi|212223960|ref|YP_002307196.1| - 0.00085 19.6 0.0 1.1 9.6 0.0 2.2 2 0 0 2 2 2 1 WhiA C-terminal HTH domain Penicillinase_R PF03965.16 gi|212223960|ref|YP_002307196.1| - 0.0014 18.9 0.0 0.13 12.6 0.0 2.4 1 1 1 2 2 2 1 Penicillinase repressor HTH_41 PF14502.6 gi|212223960|ref|YP_002307196.1| - 0.0017 18.0 0.0 0.79 9.5 0.0 2.3 2 0 0 2 2 2 1 Helix-turn-helix domain MerR PF00376.23 gi|212223960|ref|YP_002307196.1| - 0.0022 17.7 0.1 2.3 8.0 0.0 3.8 4 1 0 4 4 3 1 MerR family regulatory protein DUF2250 PF10007.9 gi|212223960|ref|YP_002307196.1| - 0.0023 18.0 0.1 0.34 11.0 0.0 2.2 2 0 0 2 2 2 1 Uncharacterized protein conserved in archaea (DUF2250) GerE PF00196.19 gi|212223960|ref|YP_002307196.1| - 0.0039 16.7 0.0 0.091 12.3 0.0 2.6 3 0 0 3 3 3 1 Bacterial regulatory proteins, luxR family DprA_WH PF17782.1 gi|212223960|ref|YP_002307196.1| - 0.0059 16.7 0.0 9.2 6.5 0.0 2.9 3 0 0 3 3 3 0 DprA winged helix domain HTH_3 PF01381.22 gi|212223960|ref|YP_002307196.1| - 0.0087 16.1 0.0 0.022 14.8 0.0 1.7 2 0 0 2 2 1 1 Helix-turn-helix HTH_Tnp_1 PF01527.20 gi|212223960|ref|YP_002307196.1| - 0.0097 16.2 0.0 1.1 9.6 0.0 2.5 3 0 0 3 3 2 1 Transposase Mga PF05043.13 gi|212223960|ref|YP_002307196.1| - 0.0097 16.5 0.0 3.8 8.1 0.0 2.3 2 0 0 2 2 2 0 Mga helix-turn-helix domain Cdc6_C PF09079.11 gi|212223960|ref|YP_002307196.1| - 0.012 15.6 0.0 3.2 7.8 0.0 2.4 2 0 0 2 2 2 0 CDC6, C terminal winged helix domain HTH_1 PF00126.27 gi|212223960|ref|YP_002307196.1| - 0.016 15.1 0.0 0.51 10.3 0.0 2.2 2 0 0 2 2 2 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_17 PF12728.7 gi|212223960|ref|YP_002307196.1| - 0.017 15.3 0.0 0.18 12.0 0.0 2.5 2 1 0 2 2 2 0 Helix-turn-helix domain DDRGK PF09756.9 gi|212223960|ref|YP_002307196.1| - 0.02 14.5 0.1 0.83 9.2 0.0 2.1 2 0 0 2 2 2 0 DDRGK domain HTH_micro PF17007.5 gi|212223960|ref|YP_002307196.1| - 0.021 13.7 0.0 0.21 10.4 0.0 2.0 1 1 1 2 2 2 0 HTH-like RNA_pol_Rpc34 PF05158.12 gi|212223960|ref|YP_002307196.1| - 0.03 13.7 0.0 5.1 6.4 0.0 2.0 2 0 0 2 2 2 0 RNA polymerase Rpc34 subunit HTH_30 PF13556.6 gi|212223960|ref|YP_002307196.1| - 0.035 13.9 0.0 0.36 10.7 0.0 2.1 2 0 0 2 2 2 0 PucR C-terminal helix-turn-helix domain HTH_26 PF13443.6 gi|212223960|ref|YP_002307196.1| - 0.059 13.8 0.0 0.99 9.9 0.0 2.2 2 0 0 2 2 2 0 Cro/C1-type HTH DNA-binding domain DUF5343 PF17278.2 gi|212223960|ref|YP_002307196.1| - 0.073 13.2 0.0 16 5.5 0.0 2.3 2 1 0 2 2 2 0 Family of unknown function (DUF5343) GntR PF00392.21 gi|212223960|ref|YP_002307196.1| - 0.08 12.6 0.0 0.31 10.7 0.0 1.8 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family FeoC PF09012.10 gi|212223960|ref|YP_002307196.1| - 0.089 12.9 0.0 13 6.0 0.0 2.2 2 0 0 2 2 2 0 FeoC like transcriptional regulator HTH_19 PF12844.7 gi|212223960|ref|YP_002307196.1| - 0.097 12.7 0.0 8.7 6.5 0.0 2.3 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_DeoR PF08220.12 gi|212223960|ref|YP_002307196.1| - 0.11 12.3 0.0 4.6 7.1 0.0 2.4 2 1 0 2 2 2 0 DeoR-like helix-turn-helix domain HrcA_DNA-bdg PF03444.15 gi|212223960|ref|YP_002307196.1| - 0.11 12.1 0.0 9.8 5.9 0.0 2.3 1 1 0 2 2 2 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding HTH_45 PF14947.6 gi|212223960|ref|YP_002307196.1| - 0.14 12.2 0.1 2 8.4 0.0 2.3 2 0 0 2 2 2 0 Winged helix-turn-helix BLACT_WH PF17778.1 gi|212223960|ref|YP_002307196.1| - 0.2 11.6 0.4 24 5.0 0.2 2.3 2 0 0 2 2 2 0 Beta-lactamase associated winged helix domain PepSY PF03413.19 gi|212223961|ref|YP_002307197.1| - 1.6e-14 54.2 1.2 3.1e-14 53.3 1.2 1.5 1 0 0 1 1 1 1 Peptidase propeptide and YPEB domain PepSY_2 PF13670.6 gi|212223961|ref|YP_002307197.1| - 0.027 14.5 4.2 0.34 11.0 0.4 2.3 2 0 0 2 2 2 0 Peptidase propeptide and YPEB domain UPF0158 PF03682.13 gi|212223961|ref|YP_002307197.1| - 0.16 12.0 1.7 0.63 10.0 0.4 2.3 1 1 2 3 3 3 0 Uncharacterised protein family (UPF0158) LPG_synthase_TM PF03706.13 gi|212223962|ref|YP_002307198.1| - 6.4e-43 147.4 23.1 8.4e-43 147.0 23.1 1.1 1 0 0 1 1 1 1 Lysylphosphatidylglycerol synthase TM region Glycos_transf_1 PF00534.20 gi|212223963|ref|YP_002307199.1| - 5.7e-39 133.4 0.1 1.8e-38 131.7 0.1 1.8 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|212223963|ref|YP_002307199.1| - 3.7e-31 108.4 0.3 3.9e-28 98.6 0.1 2.5 2 1 0 2 2 2 2 Glycosyltransferase Family 4 Glyco_trans_1_4 PF13692.6 gi|212223963|ref|YP_002307199.1| - 2e-25 89.8 0.1 5.3e-25 88.4 0.0 1.8 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.6 gi|212223963|ref|YP_002307199.1| - 1.9e-15 57.7 0.0 3.3e-14 53.6 0.0 2.3 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.6 gi|212223963|ref|YP_002307199.1| - 3e-14 53.2 0.0 5.5e-14 52.3 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.6 gi|212223963|ref|YP_002307199.1| - 9.2e-11 41.9 0.2 2.8e-10 40.3 0.1 1.9 2 0 0 2 2 2 1 Glycosyl transferase 4-like Glyco_transf_5 PF08323.11 gi|212223963|ref|YP_002307199.1| - 0.0013 18.4 0.0 0.0024 17.6 0.0 1.5 1 0 0 1 1 1 1 Starch synthase catalytic domain PIGA PF08288.12 gi|212223963|ref|YP_002307199.1| - 0.0053 17.3 0.2 0.015 15.9 0.2 1.7 1 0 0 1 1 1 1 PIGA (GPI anchor biosynthesis) Cas_DxTHG PF09455.10 gi|212223963|ref|YP_002307199.1| - 0.011 15.4 0.1 0.12 11.9 0.1 2.1 2 0 0 2 2 2 0 CRISPR-associated (Cas) DxTHG family TauE PF01925.19 gi|212223964|ref|YP_002307200.1| - 1e-11 44.9 6.7 1.1e-11 44.8 6.7 1.0 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE DUF2142 PF09913.9 gi|212223964|ref|YP_002307200.1| - 0.032 13.1 2.8 0.032 13.1 2.8 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2142) ASCH PF04266.14 gi|212223965|ref|YP_002307201.1| - 1.7e-20 73.6 0.1 2.6e-20 73.0 0.1 1.2 1 0 0 1 1 1 1 ASCH domain HAD_2 PF13419.6 gi|212223966|ref|YP_002307202.1| - 6.4e-33 114.3 0.0 8.3e-33 113.9 0.0 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|212223966|ref|YP_002307202.1| - 1.7e-18 67.7 0.0 1.7e-17 64.4 0.0 2.0 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|212223966|ref|YP_002307202.1| - 1.8e-15 56.7 0.0 3.4e-15 55.9 0.0 1.4 1 0 0 1 1 1 1 HAD-hyrolase-like HAD PF12710.7 gi|212223966|ref|YP_002307202.1| - 4.1e-07 30.6 0.1 5.8e-07 30.1 0.1 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase PGP_phosphatase PF09419.10 gi|212223966|ref|YP_002307202.1| - 0.00022 20.9 0.0 0.0016 18.1 0.0 2.1 2 0 0 2 2 2 1 Mitochondrial PGP phosphatase PNK3P PF08645.11 gi|212223966|ref|YP_002307202.1| - 0.031 14.0 0.0 0.26 11.0 0.0 2.2 2 1 0 2 2 2 0 Polynucleotide kinase 3 phosphatase 5_nucleotid PF05761.14 gi|212223966|ref|YP_002307202.1| - 0.049 12.5 0.0 1.6 7.5 0.0 2.1 2 0 0 2 2 2 0 5' nucleotidase family DUF3783 PF12646.7 gi|212223967|ref|YP_002307203.1| - 5.8e-18 64.6 1.5 1.9e-16 59.8 0.4 2.1 2 0 0 2 2 2 2 Domain of unknown function (DUF3783) P3A PF08727.11 gi|212223967|ref|YP_002307203.1| - 0.058 12.8 0.1 0.11 11.9 0.1 1.4 1 0 0 1 1 1 0 Poliovirus 3A protein like ComX PF05952.12 gi|212223967|ref|YP_002307203.1| - 0.092 12.7 0.3 0.48 10.4 0.0 2.1 2 0 0 2 2 2 0 Bacillus competence pheromone ComX SIR2 PF02146.17 gi|212223968|ref|YP_002307204.1| - 1.8e-58 197.3 0.0 2.2e-58 197.1 0.0 1.1 1 0 0 1 1 1 1 Sir2 family Zn-ribbon_8 PF09723.10 gi|212223968|ref|YP_002307204.1| - 0.0061 16.7 0.8 0.016 15.3 0.3 1.8 2 0 0 2 2 2 1 Zinc ribbon domain TPP_enzyme_M PF00205.22 gi|212223968|ref|YP_002307204.1| - 0.0091 15.7 0.0 0.026 14.3 0.0 1.7 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, central domain HypA PF01155.19 gi|212223968|ref|YP_002307204.1| - 0.035 14.1 0.0 0.067 13.2 0.0 1.5 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-RING_7 PF02591.15 gi|212223968|ref|YP_002307204.1| - 0.063 13.5 0.4 2.2 8.5 0.0 2.6 2 0 0 2 2 2 0 C4-type zinc ribbon domain YdaS_antitoxin PF15943.5 gi|212223968|ref|YP_002307204.1| - 0.14 12.1 0.1 0.65 9.9 0.0 2.1 2 0 0 2 2 2 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT zf-ribbon_3 PF13248.6 gi|212223968|ref|YP_002307204.1| - 0.17 11.3 3.8 0.57 9.7 0.4 2.4 2 0 0 2 2 2 0 zinc-ribbon domain RNA_POL_M_15KD PF02150.16 gi|212223968|ref|YP_002307204.1| - 0.2 11.5 2.2 3.6 7.5 0.1 2.3 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit zinc_ribbon_4 PF13717.6 gi|212223968|ref|YP_002307204.1| - 0.23 11.4 0.7 4.8 7.2 0.0 2.6 2 0 0 2 2 2 0 zinc-ribbon domain CpXC PF14353.6 gi|212223968|ref|YP_002307204.1| - 0.28 11.2 0.9 1.6 8.8 0.0 2.2 1 1 1 2 2 2 0 CpXC protein PhnA_Zn_Ribbon PF08274.12 gi|212223968|ref|YP_002307204.1| - 2.5 8.2 4.4 1.2 9.2 0.8 2.0 2 0 0 2 2 2 0 PhnA Zinc-Ribbon Trp_Tyr_perm PF03222.13 gi|212223969|ref|YP_002307205.1| - 8.7e-27 94.2 33.8 2.2e-26 92.8 33.8 1.5 1 1 0 1 1 1 1 Tryptophan/tyrosine permease family Aa_trans PF01490.18 gi|212223969|ref|YP_002307205.1| - 5.4e-17 61.6 32.0 1e-15 57.4 32.0 2.2 1 1 0 1 1 1 1 Transmembrane amino acid transporter protein Spore_permease PF03845.13 gi|212223969|ref|YP_002307205.1| - 8.8e-07 28.0 20.4 8.8e-07 28.0 20.4 1.6 1 1 1 2 2 2 1 Spore germination protein Nramp PF01566.18 gi|212223969|ref|YP_002307205.1| - 8.2e-05 21.7 15.5 8.2e-05 21.7 15.5 2.2 2 0 0 2 2 2 2 Natural resistance-associated macrophage protein SHMT PF00464.19 gi|212223970|ref|YP_002307206.1| - 6.9e-78 262.0 0.0 8.7e-78 261.7 0.0 1.1 1 0 0 1 1 1 1 Serine hydroxymethyltransferase Aminotran_1_2 PF00155.21 gi|212223970|ref|YP_002307206.1| - 3e-11 43.1 0.0 6.4e-11 42.0 0.0 1.5 1 0 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.21 gi|212223970|ref|YP_002307206.1| - 2.1e-09 37.1 0.0 5.9e-09 35.6 0.0 1.5 1 1 0 1 1 1 1 Beta-eliminating lyase Aminotran_5 PF00266.19 gi|212223970|ref|YP_002307206.1| - 5.1e-09 35.6 0.0 1e-08 34.6 0.0 1.4 1 1 0 1 1 1 1 Aminotransferase class-V SelA PF03841.13 gi|212223970|ref|YP_002307206.1| - 0.00055 19.0 0.0 0.00095 18.2 0.0 1.3 1 0 0 1 1 1 1 L-seryl-tRNA selenium transferase Cys_Met_Meta_PP PF01053.20 gi|212223970|ref|YP_002307206.1| - 0.0096 14.5 0.0 0.069 11.7 0.0 2.1 1 1 1 2 2 2 1 Cys/Met metabolism PLP-dependent enzyme Lactamase_B_3 PF13483.6 gi|212223970|ref|YP_002307206.1| - 0.021 14.7 0.1 0.05 13.5 0.0 1.6 2 0 0 2 2 2 0 Beta-lactamase superfamily domain DegT_DnrJ_EryC1 PF01041.17 gi|212223970|ref|YP_002307206.1| - 0.023 14.0 0.0 0.04 13.2 0.0 1.4 1 0 0 1 1 1 0 DegT/DnrJ/EryC1/StrS aminotransferase family CheD PF03975.13 gi|212223970|ref|YP_002307206.1| - 0.14 12.3 0.0 0.28 11.3 0.0 1.4 1 0 0 1 1 1 0 CheD chemotactic sensory transduction Calpain_III PF01067.22 gi|212223971|ref|YP_002307207.1| - 0.093 13.0 0.0 0.11 12.7 0.0 1.1 1 0 0 1 1 1 0 Calpain large subunit, domain III TFIIS_C PF01096.18 gi|212223973|ref|YP_002307209.1| - 1.4e-22 79.2 12.1 2.1e-22 78.7 2.1 3.2 3 0 0 3 3 3 1 Transcription factor S-II (TFIIS) RNA_POL_M_15KD PF02150.16 gi|212223973|ref|YP_002307209.1| - 5.4e-17 61.4 12.7 4.6e-16 58.4 2.8 3.1 3 0 0 3 3 3 1 RNA polymerases M/15 Kd subunit Zn_Tnp_IS1595 PF12760.7 gi|212223973|ref|YP_002307209.1| - 3e-06 27.1 11.0 0.0036 17.3 2.0 2.6 2 1 0 2 2 2 2 Transposase zinc-ribbon domain TF_Zn_Ribbon PF08271.12 gi|212223973|ref|YP_002307209.1| - 9.1e-06 25.1 8.6 0.018 14.5 0.7 2.9 2 1 0 2 2 2 2 TFIIB zinc-binding PhnA_Zn_Ribbon PF08274.12 gi|212223973|ref|YP_002307209.1| - 9.2e-06 25.5 4.6 0.054 13.5 0.2 3.2 3 0 0 3 3 3 2 PhnA Zinc-Ribbon OrfB_Zn_ribbon PF07282.11 gi|212223973|ref|YP_002307209.1| - 4.3e-05 23.4 8.8 0.0037 17.2 0.7 2.7 2 1 0 2 2 2 2 Putative transposase DNA-binding domain zf-ribbon_3 PF13248.6 gi|212223973|ref|YP_002307209.1| - 5.9e-05 22.3 15.6 0.028 13.8 3.2 4.0 3 1 0 3 3 3 2 zinc-ribbon domain DZR PF12773.7 gi|212223973|ref|YP_002307209.1| - 8.3e-05 22.5 6.2 0.058 13.4 0.5 2.6 2 1 0 2 2 2 2 Double zinc ribbon Baculo_LEF5_C PF11792.8 gi|212223973|ref|YP_002307209.1| - 0.00011 21.7 0.0 0.00011 21.7 0.0 3.2 4 0 0 4 4 3 1 Baculoviridae late expression factor 5 C-terminal domain zinc_ribbon_4 PF13717.6 gi|212223973|ref|YP_002307209.1| - 0.00023 21.0 13.9 0.034 14.1 0.3 4.2 3 1 0 3 3 3 2 zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|212223973|ref|YP_002307209.1| - 0.00047 19.8 18.7 1.2 8.9 0.1 4.1 3 1 0 3 3 3 2 zinc-ribbon domain A2L_zn_ribbon PF08792.10 gi|212223973|ref|YP_002307209.1| - 0.00063 19.4 10.0 4.8 7.0 0.0 4.2 4 0 0 4 4 4 0 A2L zinc ribbon domain Zn-ribbon_8 PF09723.10 gi|212223973|ref|YP_002307209.1| - 0.00071 19.6 10.7 1.9 8.7 0.3 4.2 4 0 0 4 4 4 1 Zinc ribbon domain DUF35_N PF12172.8 gi|212223973|ref|YP_002307209.1| - 0.00083 19.2 6.5 1.5 8.8 0.0 4.1 4 0 0 4 4 4 1 Rubredoxin-like zinc ribbon domain (DUF35_N) IBR PF01485.21 gi|212223973|ref|YP_002307209.1| - 0.0019 18.4 7.6 0.073 13.3 0.6 2.9 2 1 0 2 2 2 1 IBR domain, a half RING-finger domain zinc_ribbon_13 PF09855.9 gi|212223973|ref|YP_002307209.1| - 0.0021 18.2 9.9 0.33 11.2 0.1 3.6 2 2 1 3 3 3 1 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) UPF0547 PF10571.9 gi|212223973|ref|YP_002307209.1| - 0.0021 18.1 16.4 1.2 9.3 0.4 4.2 4 0 0 4 4 4 2 Uncharacterised protein family UPF0547 Rpr2 PF04032.16 gi|212223973|ref|YP_002307209.1| - 0.0042 17.4 2.9 0.046 14.0 2.9 2.1 1 1 0 1 1 1 1 RNAse P Rpr2/Rpp21/SNM1 subunit domain zf_UBZ PF18439.1 gi|212223973|ref|YP_002307209.1| - 0.0085 15.7 9.8 2.5 7.8 0.1 4.3 4 0 0 4 4 4 1 Ubiquitin-Binding Zinc Finger YhfH PF14149.6 gi|212223973|ref|YP_002307209.1| - 0.01 15.8 10.1 2.6 8.1 0.1 4.3 4 0 0 4 4 4 0 YhfH-like protein zf-UBP PF02148.19 gi|212223973|ref|YP_002307209.1| - 0.057 13.8 5.1 0.64 10.4 0.2 2.5 2 1 0 2 2 2 0 Zn-finger in ubiquitin-hydrolases and other protein eIF-5_eIF-2B PF01873.17 gi|212223973|ref|YP_002307209.1| - 0.09 12.7 4.4 0.25 11.2 0.2 2.3 2 1 0 2 2 2 0 Domain found in IF2B/IF5 Lar_restr_allev PF14354.6 gi|212223973|ref|YP_002307209.1| - 0.099 13.0 9.4 0.93 9.9 0.6 2.5 2 1 0 2 2 2 0 Restriction alleviation protein Lar Nudix_N_2 PF14803.6 gi|212223973|ref|YP_002307209.1| - 0.11 12.5 17.6 7.8 6.5 3.4 4.2 2 2 0 2 2 2 0 Nudix N-terminal Cys_rich_CPCC PF14206.6 gi|212223973|ref|YP_002307209.1| - 0.11 12.3 0.4 0.11 12.3 0.4 2.5 3 0 0 3 3 3 0 Cysteine-rich CPCC DUF2387 PF09526.10 gi|212223973|ref|YP_002307209.1| - 0.15 12.2 11.2 2 8.6 0.8 2.6 2 1 0 2 2 2 0 Probable metal-binding protein (DUF2387) HypA PF01155.19 gi|212223973|ref|YP_002307209.1| - 0.18 11.8 7.4 0.35 10.9 2.3 2.7 1 1 1 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Ribosomal_S27e PF01667.17 gi|212223973|ref|YP_002307209.1| - 0.19 11.4 7.6 15 5.4 0.1 3.3 2 1 0 2 2 2 0 Ribosomal protein S27 ribosomal_L24 PF17136.4 gi|212223973|ref|YP_002307209.1| - 0.23 11.9 5.7 0.92 10.0 0.4 2.7 1 1 1 2 2 2 0 Ribosomal proteins 50S L24/mitochondrial 39S L24 zinc_ribbon_10 PF10058.9 gi|212223973|ref|YP_002307209.1| - 0.24 11.1 13.2 0.21 11.3 2.0 3.6 2 2 0 2 2 2 0 Predicted integral membrane zinc-ribbon metal-binding protein zf-ACC PF17848.1 gi|212223973|ref|YP_002307209.1| - 0.26 11.4 15.1 8.8 6.5 0.1 4.2 4 0 0 4 4 4 0 Acetyl-coA carboxylase zinc finger domain Ribosomal_L32p PF01783.23 gi|212223973|ref|YP_002307209.1| - 0.37 11.1 6.6 2.5 8.4 1.1 3.4 3 1 0 3 3 3 0 Ribosomal L32p protein family zf-RRN7 PF11781.8 gi|212223973|ref|YP_002307209.1| - 0.41 10.4 11.1 25 4.7 0.1 4.1 4 0 0 4 4 4 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 zf-IS66 PF13005.7 gi|212223973|ref|YP_002307209.1| - 0.41 11.1 16.5 4.9 7.6 0.3 4.5 3 1 2 5 5 5 0 zinc-finger binding domain of transposase IS66 Auto_anti-p27 PF06677.12 gi|212223973|ref|YP_002307209.1| - 0.42 10.8 12.0 0.13 12.4 2.6 2.8 3 0 0 3 3 3 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Rubredoxin_2 PF18073.1 gi|212223973|ref|YP_002307209.1| - 0.5 10.1 19.5 0.61 9.9 0.2 4.1 4 0 0 4 4 4 0 Rubredoxin metal binding domain Terminase_GpA PF05876.12 gi|212223973|ref|YP_002307209.1| - 0.59 8.6 8.9 0.08 11.5 1.6 2.0 1 1 0 2 2 2 0 Phage terminase large subunit (GpA) Ribosomal_L37ae PF01780.19 gi|212223973|ref|YP_002307209.1| - 0.68 10.1 10.2 0.65 10.1 0.9 3.1 2 1 0 2 2 2 0 Ribosomal L37ae protein family zf-Mss51 PF13824.6 gi|212223973|ref|YP_002307209.1| - 0.75 9.9 12.7 5.2 7.3 0.3 3.6 1 1 2 3 3 3 0 Zinc-finger of mitochondrial splicing suppressor 51 DNA_RNApol_7kD PF03604.13 gi|212223973|ref|YP_002307209.1| - 0.82 9.4 12.5 15 5.4 0.4 3.7 3 1 0 3 3 3 0 DNA directed RNA polymerase, 7 kDa subunit zf-ISL3 PF14690.6 gi|212223973|ref|YP_002307209.1| - 0.86 10.3 14.1 6.9 7.4 0.1 3.9 3 1 1 4 4 4 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zinc-ribbons_6 PF07191.12 gi|212223973|ref|YP_002307209.1| - 0.98 9.4 8.0 3.7 7.6 0.5 2.8 2 2 1 3 3 3 0 zinc-ribbons DUF1451 PF07295.11 gi|212223973|ref|YP_002307209.1| - 1 9.4 5.1 8.8 6.4 0.4 3.1 3 1 0 3 3 3 0 Zinc-ribbon containing domain RPA_interact_C PF14768.6 gi|212223973|ref|YP_002307209.1| - 1.1 9.9 5.3 25 5.5 2.9 2.8 1 1 1 2 2 2 0 Replication protein A interacting C-terminal zf-BED PF02892.15 gi|212223973|ref|YP_002307209.1| - 1.1 9.3 8.7 0.98 9.5 1.3 3.0 3 0 0 3 3 3 0 BED zinc finger Zn_ribbon_recom PF13408.6 gi|212223973|ref|YP_002307209.1| - 1.4 9.5 9.1 1 9.9 0.3 2.9 2 1 1 3 3 3 0 Recombinase zinc beta ribbon domain RecR PF02132.15 gi|212223973|ref|YP_002307209.1| - 1.4 8.5 11.2 15 5.3 3.4 3.9 3 1 0 3 3 3 0 RecR protein zf-C4_Topoisom PF01396.19 gi|212223973|ref|YP_002307209.1| - 1.5 8.6 14.8 2.8 7.8 0.5 3.6 3 1 0 3 3 3 0 Topoisomerase DNA binding C4 zinc finger zf-tcix PF14952.6 gi|212223973|ref|YP_002307209.1| - 1.6 8.4 14.5 15 5.3 0.3 4.1 4 0 0 4 4 4 0 Putative treble-clef, zinc-finger, Zn-binding Ogr_Delta PF04606.12 gi|212223973|ref|YP_002307209.1| - 2 8.4 10.6 1.4 9.0 2.0 2.9 2 2 0 2 2 2 0 Ogr/Delta-like zinc finger Zn_ribbon_SprT PF17283.2 gi|212223973|ref|YP_002307209.1| - 2.1 8.3 14.2 7.5 6.6 2.8 3.5 3 1 0 3 3 3 0 SprT-like zinc ribbon domain DUF3268 PF11672.8 gi|212223973|ref|YP_002307209.1| - 2.2 8.6 6.9 2.6 8.4 0.8 2.4 2 1 0 2 2 2 0 zinc-finger-containing domain ADK_lid PF05191.14 gi|212223973|ref|YP_002307209.1| - 2.3 8.3 13.4 10 6.2 0.2 4.1 4 0 0 4 4 4 0 Adenylate kinase, active site lid Opy2 PF09463.10 gi|212223973|ref|YP_002307209.1| - 2.4 8.5 0.1 2.4 8.5 0.1 3.4 4 0 0 4 4 3 0 Opy2 protein zf_C2H2_10 PF18414.1 gi|212223973|ref|YP_002307209.1| - 2.4 7.8 13.4 5.6 6.6 0.4 4.1 4 0 0 4 4 4 0 C2H2 type zinc-finger DUF2225 PF09986.9 gi|212223973|ref|YP_002307209.1| - 2.5 7.8 5.5 0.53 10.0 0.3 2.3 2 1 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2225) zinc_ribbon_15 PF17032.5 gi|212223973|ref|YP_002307209.1| - 2.8 8.7 12.0 13 6.6 5.0 3.1 2 1 0 2 2 2 0 zinc-ribbon family Rubredoxin PF00301.20 gi|212223973|ref|YP_002307209.1| - 3.7 7.6 15.7 5.4 7.1 0.2 4.2 4 0 0 4 4 4 0 Rubredoxin NOB1_Zn_bind PF08772.11 gi|212223973|ref|YP_002307209.1| - 4.7 7.5 15.1 5 7.4 3.6 3.6 2 2 1 3 3 3 0 Nin one binding (NOB1) Zn-ribbon like DUF3797 PF12677.7 gi|212223973|ref|YP_002307209.1| - 5.4 7.0 15.5 6.9 6.6 4.9 3.2 2 2 0 2 2 2 0 Domain of unknown function (DUF3797) Prim_Zn_Ribbon PF08273.12 gi|212223973|ref|YP_002307209.1| - 6 7.2 13.1 5.2 7.4 0.1 3.3 3 1 0 3 3 3 0 Zinc-binding domain of primase-helicase zf-piccolo PF05715.13 gi|212223973|ref|YP_002307209.1| - 6.4 7.0 8.9 0.96 9.6 0.6 2.8 2 1 0 2 2 2 0 Piccolo Zn-finger zf-TFIIB PF13453.6 gi|212223973|ref|YP_002307209.1| - 6.9 6.1 14.2 7.9 5.9 1.2 3.2 2 2 0 2 2 2 0 Transcription factor zinc-finger zf-H2C2_2 PF13465.6 gi|212223973|ref|YP_002307209.1| - 8 7.1 11.9 30 5.3 0.0 4.0 4 0 0 4 4 4 0 Zinc-finger double domain DUF3209 PF11483.8 gi|212223974|ref|YP_002307210.1| - 0.037 14.5 0.1 0.038 14.5 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3209) PCNA_N PF00705.18 gi|212223975|ref|YP_002307211.1| - 9.3e-21 73.9 0.1 4.1e-18 65.3 0.0 2.1 2 0 0 2 2 2 2 Proliferating cell nuclear antigen, N-terminal domain Rad1 PF02144.16 gi|212223975|ref|YP_002307211.1| - 2.2e-11 43.4 0.1 6.2e-07 28.8 0.0 2.0 1 1 1 2 2 2 2 Repair protein Rad1/Rec1/Rad17 PCNA_C PF02747.15 gi|212223975|ref|YP_002307211.1| - 2.5e-10 40.6 0.0 2.2e-09 37.6 0.0 2.2 2 0 0 2 2 2 1 Proliferating cell nuclear antigen, C-terminal domain Rad9 PF04139.13 gi|212223975|ref|YP_002307211.1| - 0.00024 20.6 0.0 0.00057 19.4 0.0 1.8 1 1 0 1 1 1 1 Rad9 DUF4901 PF16244.5 gi|212223975|ref|YP_002307211.1| - 0.032 13.6 0.1 1.3 8.4 0.1 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4901) Chalcone_2 PF16035.5 gi|212223975|ref|YP_002307211.1| - 0.04 13.7 0.1 0.079 12.7 0.0 1.5 2 0 0 2 2 2 0 Chalcone isomerase like Hus1 PF04005.12 gi|212223975|ref|YP_002307211.1| - 0.1 11.7 0.0 0.3 10.1 0.0 1.8 1 1 0 1 1 1 0 Hus1-like protein DUF1995 PF09353.10 gi|212223975|ref|YP_002307211.1| - 0.14 12.2 0.1 0.84 9.6 0.1 2.0 1 1 0 1 1 1 0 Domain of unknown function (DUF1995) FliH PF02108.16 gi|212223976|ref|YP_002307212.1| - 0.037 14.1 0.4 0.14 12.2 0.2 1.8 2 0 0 2 2 2 0 Flagellar assembly protein FliH Molybdopterin PF00384.22 gi|212223977|ref|YP_002307213.1| - 1.3e-44 152.9 0.0 9.1e-44 150.1 0.0 1.9 1 1 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.21 gi|212223977|ref|YP_002307213.1| - 2.9e-20 72.3 0.0 6.4e-20 71.2 0.0 1.6 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.16 gi|212223977|ref|YP_002307213.1| - 1.3e-07 31.5 0.1 2.6e-07 30.5 0.1 1.4 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain UPF0181 PF03701.14 gi|212223977|ref|YP_002307213.1| - 0.044 13.4 0.0 0.092 12.4 0.0 1.5 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0181) AhpC-TSA PF00578.21 gi|212223978|ref|YP_002307214.1| - 6.5e-32 110.1 0.0 9e-32 109.6 0.0 1.2 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|212223978|ref|YP_002307214.1| - 2.1e-14 53.5 0.0 2.9e-14 53.0 0.0 1.1 1 0 0 1 1 1 1 Redoxin 1-cysPrx_C PF10417.9 gi|212223978|ref|YP_002307214.1| - 1.4e-11 44.0 0.1 2.4e-11 43.3 0.1 1.4 1 0 0 1 1 1 1 C-terminal domain of 1-Cys peroxiredoxin ABC2_membrane_3 PF12698.7 gi|212223979|ref|YP_002307215.1| - 2.1e-09 36.9 9.7 2.1e-09 36.9 9.7 1.8 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.7 gi|212223979|ref|YP_002307215.1| - 0.0011 18.4 7.9 0.0011 18.4 7.9 2.1 2 0 0 2 2 2 2 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|212223979|ref|YP_002307215.1| - 0.0024 17.9 12.2 0.011 15.7 11.2 2.4 1 1 1 2 2 2 1 ABC-2 family transporter protein DUF2070 PF09843.9 gi|212223979|ref|YP_002307215.1| - 5.8 5.1 16.2 1.5e+02 0.5 16.0 2.0 1 1 0 1 1 1 0 Predicted membrane protein (DUF2070) OppC_N PF12911.7 gi|212223979|ref|YP_002307215.1| - 7.4 6.6 9.9 4 7.5 5.5 2.6 2 1 0 2 2 2 0 N-terminal TM domain of oligopeptide transport permease C ABC2_membrane_3 PF12698.7 gi|212223980|ref|YP_002307216.1| - 1.1e-08 34.6 18.6 1.1e-08 34.6 18.6 1.3 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane PF01061.24 gi|212223980|ref|YP_002307216.1| - 1.8e-08 34.0 16.6 1.8e-08 34.0 16.6 1.8 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_4 PF12730.7 gi|212223980|ref|YP_002307216.1| - 0.00015 21.8 8.5 0.00039 20.4 8.4 1.8 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.6 gi|212223980|ref|YP_002307216.1| - 0.015 14.9 16.2 0.029 13.9 16.2 1.7 1 1 0 1 1 1 0 ABC-2 family transporter protein ABC2_membrane_2 PF12679.7 gi|212223980|ref|YP_002307216.1| - 0.1 11.8 16.0 0.026 13.8 12.6 1.7 2 1 0 2 2 2 0 ABC-2 family transporter protein ABC_tran PF00005.27 gi|212223981|ref|YP_002307217.1| - 8.1e-29 100.9 0.0 1.3e-28 100.3 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|212223981|ref|YP_002307217.1| - 1.5e-13 51.3 0.1 1.4e-09 38.2 0.0 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 gi|212223981|ref|YP_002307217.1| - 7.1e-05 23.4 1.0 0.00053 20.7 1.0 2.4 1 1 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_23 PF13476.6 gi|212223981|ref|YP_002307217.1| - 0.00018 22.1 0.0 0.00045 20.8 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA PF00004.29 gi|212223981|ref|YP_002307217.1| - 0.00031 21.2 0.1 0.0013 19.1 0.1 1.9 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_15 PF13175.6 gi|212223981|ref|YP_002307217.1| - 0.00058 19.7 0.0 0.27 10.9 0.3 2.1 1 1 1 2 2 2 2 AAA ATPase domain AAA_30 PF13604.6 gi|212223981|ref|YP_002307217.1| - 0.014 15.1 0.0 0.028 14.1 0.0 1.4 1 0 0 1 1 1 0 AAA domain Zeta_toxin PF06414.12 gi|212223981|ref|YP_002307217.1| - 0.02 14.2 0.0 0.45 9.8 0.0 2.1 2 0 0 2 2 2 0 Zeta toxin SRP54 PF00448.22 gi|212223981|ref|YP_002307217.1| - 0.022 14.4 0.0 0.04 13.6 0.0 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain Rad17 PF03215.15 gi|212223981|ref|YP_002307217.1| - 0.049 13.5 0.0 0.073 13.0 0.0 1.3 1 0 0 1 1 1 0 Rad17 P-loop domain Thymidylate_kin PF02223.17 gi|212223981|ref|YP_002307217.1| - 0.087 12.5 0.1 0.84 9.3 0.1 2.4 2 0 0 2 2 2 0 Thymidylate kinase TBPIP_N PF15517.6 gi|212223981|ref|YP_002307217.1| - 0.09 12.8 0.0 0.28 11.3 0.0 1.8 1 0 0 1 1 1 0 TBP-interacting protein N-terminus AAA_13 PF13166.6 gi|212223981|ref|YP_002307217.1| - 0.13 10.9 0.0 4.6 5.8 0.0 2.0 2 0 0 2 2 2 0 AAA domain Methyltransf_31 PF13847.6 gi|212223982|ref|YP_002307218.1| - 2.7e-07 30.5 0.0 2.9e-07 30.4 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|212223982|ref|YP_002307218.1| - 2.6e-06 28.1 0.0 4.5e-06 27.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|212223982|ref|YP_002307218.1| - 0.0014 19.2 0.0 0.0025 18.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|212223982|ref|YP_002307218.1| - 0.021 14.1 0.0 0.026 13.8 0.0 1.2 1 0 0 1 1 1 0 ubiE/COQ5 methyltransferase family Pox_MCEL PF03291.16 gi|212223982|ref|YP_002307218.1| - 0.11 11.6 0.0 0.11 11.6 0.0 1.1 1 0 0 1 1 1 0 mRNA capping enzyme Methyltransf_12 PF08242.12 gi|212223982|ref|YP_002307218.1| - 0.14 12.9 0.0 0.21 12.3 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain Thioredoxin PF00085.20 gi|212223983|ref|YP_002307219.1| - 6.1e-17 61.5 0.0 6.7e-17 61.4 0.0 1.0 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.6 gi|212223983|ref|YP_002307219.1| - 6.1e-08 33.1 0.0 3.8e-07 30.5 0.0 1.9 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_8 PF13905.6 gi|212223983|ref|YP_002307219.1| - 1.9e-06 28.1 0.0 0.0066 16.7 0.0 2.2 1 1 1 2 2 2 2 Thioredoxin-like Thioredoxin_3 PF13192.6 gi|212223983|ref|YP_002307219.1| - 2.4e-05 24.3 0.0 3.1e-05 23.9 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin domain Glutaredoxin PF00462.24 gi|212223983|ref|YP_002307219.1| - 0.00011 22.3 0.2 0.00021 21.4 0.0 1.6 2 0 0 2 2 2 1 Glutaredoxin TraF PF13728.6 gi|212223983|ref|YP_002307219.1| - 0.00034 20.5 0.0 0.00048 20.0 0.0 1.2 1 0 0 1 1 1 1 F plasmid transfer operon protein Thioredoxin_9 PF14595.6 gi|212223983|ref|YP_002307219.1| - 0.0029 17.4 0.0 0.0035 17.1 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin DUF836 PF05768.14 gi|212223983|ref|YP_002307219.1| - 0.01 16.3 0.0 0.013 15.9 0.0 1.2 1 0 0 1 1 1 0 Glutaredoxin-like domain (DUF836) AhpC-TSA PF00578.21 gi|212223983|ref|YP_002307219.1| - 0.05 13.5 0.0 0.059 13.3 0.0 1.1 1 0 0 1 1 1 0 AhpC/TSA family OST3_OST6 PF04756.13 gi|212223983|ref|YP_002307219.1| - 0.051 12.9 0.0 0.058 12.7 0.0 1.1 1 0 0 1 1 1 0 OST3 / OST6 family, transporter family Thioredoxin_4 PF13462.6 gi|212223983|ref|YP_002307219.1| - 0.056 13.6 0.1 0.73 10.0 0.0 2.0 1 1 1 2 2 2 0 Thioredoxin Thioredoxin_5 PF13743.6 gi|212223983|ref|YP_002307219.1| - 0.14 11.8 0.5 3 7.5 0.1 2.0 1 1 1 2 2 2 0 Thioredoxin E1-E2_ATPase PF00122.20 gi|212223984|ref|YP_002307220.1| - 4.4e-61 205.6 3.3 7.1e-61 204.9 0.3 2.3 2 0 0 2 2 2 1 E1-E2 ATPase Hydrolase PF00702.26 gi|212223984|ref|YP_002307220.1| - 2.3e-47 162.0 6.4 4.3e-47 161.1 6.4 1.5 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HMA PF00403.26 gi|212223984|ref|YP_002307220.1| - 1.2e-32 112.1 8.9 3.9e-16 59.2 0.4 3.5 3 0 0 3 3 3 2 Heavy-metal-associated domain Hydrolase_3 PF08282.12 gi|212223984|ref|YP_002307220.1| - 1.7e-07 31.3 2.2 0.00037 20.3 0.4 2.6 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|212223984|ref|YP_002307220.1| - 2.8e-07 31.1 0.1 1.4e-06 28.9 0.1 2.2 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 gi|212223984|ref|YP_002307220.1| - 2.5e-06 27.7 0.6 1e-05 25.7 0.6 2.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.6 gi|212223984|ref|YP_002307220.1| - 0.00081 19.5 0.1 0.0075 16.4 0.0 2.7 3 0 0 3 3 3 1 Haloacid dehalogenase-like hydrolase Fe-ADH PF00465.19 gi|212223984|ref|YP_002307220.1| - 0.0072 15.2 1.4 0.064 12.1 0.1 2.3 2 0 0 2 2 2 1 Iron-containing alcohol dehydrogenase CPSase_L_D2 PF02786.17 gi|212223984|ref|YP_002307220.1| - 0.014 14.9 0.1 0.033 13.7 0.1 1.6 1 0 0 1 1 1 0 Carbamoyl-phosphate synthase L chain, ATP binding domain DUF3213 PF11491.8 gi|212223984|ref|YP_002307220.1| - 0.017 15.3 2.2 1.9 8.7 0.2 3.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3213) Arc_trans_TRASH PF08394.10 gi|212223985|ref|YP_002307221.1| - 1.3e-20 73.4 8.3 2.3e-20 72.6 8.3 1.5 1 0 0 1 1 1 1 Archaeal TRASH domain HTH_24 PF13412.6 gi|212223985|ref|YP_002307221.1| - 1.7e-15 56.3 1.3 2.9e-15 55.6 1.3 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|212223985|ref|YP_002307221.1| - 4.7e-13 48.7 0.9 6.9e-13 48.2 0.9 1.3 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_11 PF08279.12 gi|212223985|ref|YP_002307221.1| - 8.9e-09 35.2 0.4 2.3e-08 33.9 0.4 1.7 1 0 0 1 1 1 1 HTH domain HTH_5 PF01022.20 gi|212223985|ref|YP_002307221.1| - 1.1e-08 34.8 0.5 2e-08 34.0 0.5 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR PF01047.22 gi|212223985|ref|YP_002307221.1| - 1.2e-08 34.8 0.4 2.1e-08 34.0 0.4 1.4 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.7 gi|212223985|ref|YP_002307221.1| - 6.8e-07 29.1 0.1 1.5e-06 28.0 0.1 1.5 1 0 0 1 1 1 1 MarR family HTH_Crp_2 PF13545.6 gi|212223985|ref|YP_002307221.1| - 2.7e-06 27.3 0.5 1.2e-05 25.2 0.1 2.1 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain HTH_Mga PF08280.11 gi|212223985|ref|YP_002307221.1| - 5e-06 26.4 1.1 1e-05 25.4 0.9 1.7 1 1 0 1 1 1 1 M protein trans-acting positive regulator (MGA) HTH domain GntR PF00392.21 gi|212223985|ref|YP_002307221.1| - 5.4e-06 26.0 0.1 1.3e-05 24.7 0.1 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family Fe_dep_repress PF01325.19 gi|212223985|ref|YP_002307221.1| - 8.5e-06 25.9 0.2 1.6e-05 25.0 0.2 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_20 PF12840.7 gi|212223985|ref|YP_002307221.1| - 8.5e-06 25.7 0.1 1.5e-05 25.0 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.19 gi|212223985|ref|YP_002307221.1| - 8.8e-06 25.5 0.2 2.2e-05 24.3 0.2 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_DeoR PF08220.12 gi|212223985|ref|YP_002307221.1| - 3.9e-05 23.3 0.3 6.8e-05 22.5 0.3 1.4 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_IclR PF09339.10 gi|212223985|ref|YP_002307221.1| - 0.0002 21.1 0.1 0.00039 20.2 0.1 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain zf-FCS PF06467.14 gi|212223985|ref|YP_002307221.1| - 0.0002 21.2 3.8 0.00036 20.4 3.8 1.4 1 0 0 1 1 1 1 MYM-type Zinc finger with FCS sequence motif HTH_23 PF13384.6 gi|212223985|ref|YP_002307221.1| - 0.00024 20.8 0.0 0.00047 19.9 0.0 1.5 1 0 0 1 1 1 1 Homeodomain-like domain HTH_30 PF13556.6 gi|212223985|ref|YP_002307221.1| - 0.00031 20.5 0.0 0.00056 19.7 0.0 1.4 1 0 0 1 1 1 1 PucR C-terminal helix-turn-helix domain Sigma70_r4_2 PF08281.12 gi|212223985|ref|YP_002307221.1| - 0.00089 18.9 0.1 0.0017 18.0 0.1 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 Rrf2 PF02082.20 gi|212223985|ref|YP_002307221.1| - 0.0013 19.1 0.4 0.0026 18.1 0.1 1.6 2 0 0 2 2 1 1 Transcriptional regulator Mga PF05043.13 gi|212223985|ref|YP_002307221.1| - 0.0014 19.1 0.3 0.004 17.7 0.3 1.7 1 0 0 1 1 1 1 Mga helix-turn-helix domain YHS PF04945.13 gi|212223985|ref|YP_002307221.1| - 0.0022 18.1 1.2 0.0053 16.8 1.2 1.6 1 1 0 1 1 1 1 YHS domain HTH_36 PF13730.6 gi|212223985|ref|YP_002307221.1| - 0.0025 17.7 0.1 0.0047 16.8 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HxlR PF01638.17 gi|212223985|ref|YP_002307221.1| - 0.003 17.4 0.6 0.0087 15.9 0.3 1.8 1 1 0 1 1 1 1 HxlR-like helix-turn-helix HTH_41 PF14502.6 gi|212223985|ref|YP_002307221.1| - 0.0043 16.7 0.0 0.0088 15.7 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_28 PF13518.6 gi|212223985|ref|YP_002307221.1| - 0.006 16.7 0.0 0.01 15.9 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain Sigma70_r4 PF04545.16 gi|212223985|ref|YP_002307221.1| - 0.0064 16.0 0.1 0.013 15.0 0.1 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 AsnC_trans_reg PF01037.21 gi|212223985|ref|YP_002307221.1| - 0.012 15.6 0.0 0.029 14.3 0.0 1.6 1 0 0 1 1 1 0 Lrp/AsnC ligand binding domain DUF2089 PF09862.9 gi|212223985|ref|YP_002307221.1| - 0.012 15.6 3.1 0.017 15.1 0.1 2.5 2 1 1 3 3 3 0 Protein of unknown function (DUF2089) FaeA PF04703.12 gi|212223985|ref|YP_002307221.1| - 0.013 15.8 0.1 0.13 12.7 0.1 2.4 3 0 0 3 3 2 0 FaeA-like protein HTH_9 PF08221.11 gi|212223985|ref|YP_002307221.1| - 0.013 15.6 0.1 0.026 14.6 0.1 1.5 1 0 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain HTH_29 PF13551.6 gi|212223985|ref|YP_002307221.1| - 0.013 15.5 0.0 0.032 14.2 0.0 1.6 2 0 0 2 2 1 0 Winged helix-turn helix FeoC PF09012.10 gi|212223985|ref|YP_002307221.1| - 0.021 14.9 0.4 0.072 13.2 0.1 2.0 2 0 0 2 2 2 0 FeoC like transcriptional regulator LIM PF00412.22 gi|212223985|ref|YP_002307221.1| - 0.022 15.0 2.3 0.038 14.2 2.3 1.4 1 0 0 1 1 1 0 LIM domain HTH_WhiA PF02650.14 gi|212223985|ref|YP_002307221.1| - 0.026 14.9 1.0 0.026 14.9 1.0 2.2 3 0 0 3 3 1 0 WhiA C-terminal HTH domain HTH_10 PF04967.12 gi|212223985|ref|YP_002307221.1| - 0.027 14.3 0.1 0.055 13.3 0.1 1.5 1 0 0 1 1 1 0 HTH DNA binding domain DUF2757 PF10955.8 gi|212223985|ref|YP_002307221.1| - 0.03 14.6 0.4 0.12 12.7 0.0 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF2757) YyzF PF14116.6 gi|212223985|ref|YP_002307221.1| - 0.032 14.3 0.1 0.094 12.8 0.1 1.8 1 0 0 1 1 1 0 YyzF-like protein DUF3268 PF11672.8 gi|212223985|ref|YP_002307221.1| - 0.042 14.2 0.9 0.08 13.3 0.9 1.5 1 0 0 1 1 1 0 zinc-finger-containing domain UPF0122 PF04297.14 gi|212223985|ref|YP_002307221.1| - 0.052 13.8 0.5 0.052 13.8 0.5 1.8 2 0 0 2 2 1 0 Putative helix-turn-helix protein, YlxM / p13 like Sigma70_ECF PF07638.11 gi|212223985|ref|YP_002307221.1| - 0.052 13.4 0.1 1.2 9.0 0.0 2.1 2 0 0 2 2 2 0 ECF sigma factor HTH_8 PF02954.19 gi|212223985|ref|YP_002307221.1| - 0.056 13.3 0.1 0.17 11.7 0.1 1.9 1 0 0 1 1 1 0 Bacterial regulatory protein, Fis family HTH_CodY PF08222.11 gi|212223985|ref|YP_002307221.1| - 0.056 13.0 0.0 0.11 12.1 0.0 1.5 1 0 0 1 1 1 0 CodY helix-turn-helix domain Penicillinase_R PF03965.16 gi|212223985|ref|YP_002307221.1| - 0.072 13.4 0.1 0.18 12.2 0.1 1.6 1 0 0 1 1 1 0 Penicillinase repressor HTH_34 PF13601.6 gi|212223985|ref|YP_002307221.1| - 0.079 13.1 0.1 0.17 12.1 0.1 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_1 PF00126.27 gi|212223985|ref|YP_002307221.1| - 0.082 12.9 0.0 0.14 12.1 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_22 PF13309.6 gi|212223985|ref|YP_002307221.1| - 0.084 13.0 0.1 0.24 11.5 0.0 1.9 1 1 0 1 1 1 0 HTH domain LexA_DNA_bind PF01726.16 gi|212223985|ref|YP_002307221.1| - 0.087 12.6 0.1 0.22 11.3 0.1 1.6 1 0 0 1 1 1 0 LexA DNA binding domain HTH_6 PF01418.17 gi|212223985|ref|YP_002307221.1| - 0.11 12.5 0.0 0.19 11.7 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain, rpiR family RPA_C PF08784.11 gi|212223985|ref|YP_002307221.1| - 0.13 13.0 0.0 0.22 12.2 0.0 1.3 1 0 0 1 1 1 0 Replication protein A C terminal FtsK_gamma PF09397.10 gi|212223985|ref|YP_002307221.1| - 0.14 11.9 0.0 0.28 11.0 0.0 1.5 1 0 0 1 1 1 0 Ftsk gamma domain VATC PF18716.1 gi|212223985|ref|YP_002307221.1| - 0.17 11.8 4.3 0.33 10.9 4.3 1.4 1 0 0 1 1 1 0 Vms1-associating treble clef domain Sgf11 PF08209.11 gi|212223985|ref|YP_002307221.1| - 0.44 10.1 5.4 9.3 5.9 1.3 2.6 3 0 0 3 3 2 0 Sgf11 (transcriptional regulation protein) TarH PF02203.15 gi|212223986|ref|YP_002307222.1| - 0.28 11.1 0.0 0.4 10.6 0.0 1.2 1 0 0 1 1 1 0 Tar ligand binding domain homologue Methyltransf_11 PF08241.12 gi|212223987|ref|YP_002307223.1| - 2.1e-25 89.2 0.0 4.7e-25 88.1 0.0 1.6 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|212223987|ref|YP_002307223.1| - 5.3e-23 81.5 0.0 1.9e-22 79.8 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|212223987|ref|YP_002307223.1| - 6.9e-23 81.2 0.1 1.4e-22 80.2 0.1 1.5 1 1 1 2 2 2 1 ubiE/COQ5 methyltransferase family Methyltransf_31 PF13847.6 gi|212223987|ref|YP_002307223.1| - 2e-21 76.4 0.0 2.9e-21 75.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|212223987|ref|YP_002307223.1| - 7.8e-20 71.4 0.0 9.6e-20 71.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|212223987|ref|YP_002307223.1| - 7.7e-17 61.9 0.0 1.3e-16 61.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_4 PF02390.17 gi|212223987|ref|YP_002307223.1| - 4.6e-06 26.2 0.0 1e-05 25.1 0.0 1.6 1 0 0 1 1 1 1 Putative methyltransferase TehB PF03848.14 gi|212223987|ref|YP_002307223.1| - 1.3e-05 24.7 0.0 1.8e-05 24.2 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB CMAS PF02353.20 gi|212223987|ref|YP_002307223.1| - 1.9e-05 24.1 0.0 4.7e-05 22.8 0.0 1.6 1 1 0 1 1 1 1 Mycolic acid cyclopropane synthetase PCMT PF01135.19 gi|212223987|ref|YP_002307223.1| - 4e-05 23.5 0.0 6.8e-05 22.7 0.0 1.4 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) MetW PF07021.12 gi|212223987|ref|YP_002307223.1| - 0.00048 19.8 0.0 0.0007 19.2 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_8 PF05148.15 gi|212223987|ref|YP_002307223.1| - 0.0013 18.6 0.1 0.011 15.6 0.1 2.1 1 1 0 1 1 1 1 Hypothetical methyltransferase Methyltransf_9 PF08003.11 gi|212223987|ref|YP_002307223.1| - 0.02 13.8 0.0 0.024 13.6 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1698) UPF0020 PF01170.18 gi|212223987|ref|YP_002307223.1| - 0.04 13.6 0.0 0.088 12.5 0.0 1.6 2 1 0 2 2 2 0 Putative RNA methylase family UPF0020 DUF2194 PF09960.9 gi|212223987|ref|YP_002307223.1| - 0.054 11.8 0.0 0.066 11.5 0.0 1.1 1 0 0 1 1 1 0 Uncharacterised protein conserved in bacteria (DUF2194) SHOCT PF09851.9 gi|212223988|ref|YP_002307224.1| - 2.6e-11 42.9 6.3 3.6e-11 42.4 6.3 1.2 1 0 0 1 1 1 1 Short C-terminal domain DUF1707 PF08044.11 gi|212223988|ref|YP_002307224.1| - 0.00014 21.9 0.1 0.00016 21.6 0.1 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1707) GvpG PF05120.12 gi|212223988|ref|YP_002307224.1| - 0.00029 20.8 0.2 0.00039 20.4 0.2 1.2 1 0 0 1 1 1 1 Gas vesicle protein G Saf_2TM PF18303.1 gi|212223988|ref|YP_002307224.1| - 0.017 14.7 0.3 0.017 14.7 0.3 1.2 1 0 0 1 1 1 0 SAVED-fused 2TM effector domain VbhA PF18495.1 gi|212223988|ref|YP_002307224.1| - 0.038 13.8 0.6 0.046 13.6 0.6 1.2 1 0 0 1 1 1 0 Antitoxin VbhA DUF21 PF01595.20 gi|212223988|ref|YP_002307224.1| - 0.08 12.6 0.0 0.098 12.4 0.0 1.0 1 0 0 1 1 1 0 Cyclin M transmembrane N-terminal domain DUF3301 PF11743.8 gi|212223988|ref|YP_002307224.1| - 0.085 12.5 0.0 0.11 12.2 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3301) DMAP_binding PF06464.11 gi|212223988|ref|YP_002307224.1| - 0.11 13.3 1.2 0.15 12.9 1.2 1.2 1 0 0 1 1 1 0 DMAP1-binding Domain ODV-E18 PF10717.9 gi|212223988|ref|YP_002307224.1| - 0.28 11.1 0.2 0.36 10.7 0.2 1.1 1 0 0 1 1 1 0 Occlusion-derived virus envelope protein ODV-E18 E1-E2_ATPase PF00122.20 gi|212223989|ref|YP_002307225.1| - 1.2e-52 178.1 0.8 1.2e-52 178.1 0.8 2.7 4 0 0 4 4 4 1 E1-E2 ATPase Hydrolase PF00702.26 gi|212223989|ref|YP_002307225.1| - 3.5e-43 148.4 0.6 5.8e-43 147.6 0.6 1.4 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.12 gi|212223989|ref|YP_002307225.1| - 2.7e-07 30.6 0.2 0.0015 18.3 0.3 2.3 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|212223989|ref|YP_002307225.1| - 0.0003 21.3 0.0 0.00066 20.1 0.0 1.5 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 gi|212223989|ref|YP_002307225.1| - 0.15 12.2 0.1 0.38 10.8 0.1 1.7 1 1 0 1 1 1 0 Haloacid dehalogenase-like hydrolase EamA PF00892.20 gi|212223991|ref|YP_002307227.1| - 2.3e-34 118.5 39.9 3.2e-18 66.2 8.3 2.1 2 0 0 2 2 2 2 EamA-like transporter family EmrE PF13536.6 gi|212223991|ref|YP_002307227.1| - 2.2e-08 34.0 3.0 2.2e-08 34.0 3.0 1.7 1 1 1 2 2 2 1 Putative multidrug resistance efflux transporter PUNUT PF16913.5 gi|212223991|ref|YP_002307227.1| - 4.5e-05 22.8 4.5 4.5e-05 22.8 4.5 2.1 2 0 0 2 2 2 1 Purine nucleobase transmembrane transport TMEM234 PF10639.9 gi|212223991|ref|YP_002307227.1| - 0.0048 16.9 0.3 0.0048 16.9 0.3 2.6 2 1 0 2 2 2 1 Putative transmembrane family 234 SLC35F PF06027.12 gi|212223991|ref|YP_002307227.1| - 0.0065 16.0 17.9 0.086 12.3 3.9 2.1 1 1 1 2 2 2 2 Solute carrier family 35 Nucleos_tra2_C PF07662.13 gi|212223991|ref|YP_002307227.1| - 0.0077 16.1 2.2 0.0077 16.1 2.2 2.4 1 1 1 2 2 2 1 Na+ dependent nucleoside transporter C-terminus DUF443 PF04276.12 gi|212223991|ref|YP_002307227.1| - 0.13 12.0 0.2 0.13 12.0 0.2 2.6 1 1 1 2 2 2 0 Protein of unknown function (DUF443) Multi_Drug_Res PF00893.19 gi|212223991|ref|YP_002307227.1| - 1.9 9.2 18.1 1.1 10.0 0.4 3.3 3 0 0 3 3 3 0 Small Multidrug Resistance protein HMA PF00403.26 gi|212223992|ref|YP_002307228.1| - 2.6e-15 56.6 0.9 3.2e-15 56.3 0.9 1.1 1 0 0 1 1 1 1 Heavy-metal-associated domain TusA PF01206.17 gi|212223992|ref|YP_002307228.1| - 0.0028 17.4 0.1 0.0057 16.5 0.1 1.5 1 1 0 1 1 1 1 Sulfurtransferase TusA HTH_37 PF13744.6 gi|212223992|ref|YP_002307228.1| - 0.037 14.0 0.0 0.8 9.7 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain MIF4G_like PF09088.11 gi|212223992|ref|YP_002307228.1| - 0.043 13.6 0.0 0.052 13.3 0.0 1.0 1 0 0 1 1 1 0 MIF4G like DUF951 PF06107.11 gi|212223992|ref|YP_002307228.1| - 0.077 12.9 0.2 0.12 12.3 0.2 1.3 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF951) DUF4145 PF13643.6 gi|212223992|ref|YP_002307228.1| - 0.093 12.9 0.1 0.12 12.5 0.1 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4145) ArgoMid PF16487.5 gi|212223992|ref|YP_002307228.1| - 0.16 12.3 0.0 0.19 12.0 0.0 1.1 1 0 0 1 1 1 0 Mid domain of argonaute DUF302 PF03625.14 gi|212223993|ref|YP_002307229.1| - 9.8e-06 25.4 0.0 1.7e-05 24.6 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function DUF302 CheR PF01739.18 gi|212223993|ref|YP_002307229.1| - 0.14 11.6 0.0 0.33 10.4 0.0 1.5 1 1 1 2 2 2 0 CheR methyltransferase, SAM binding domain CoA_binding_2 PF13380.6 gi|212223994|ref|YP_002307230.1| - 2.2e-34 118.4 0.0 2.4e-34 118.3 0.0 1.0 1 0 0 1 1 1 1 CoA binding domain CoA_binding PF02629.19 gi|212223994|ref|YP_002307230.1| - 1.1e-11 45.2 0.0 1.6e-11 44.7 0.0 1.2 1 0 0 1 1 1 1 CoA binding domain GFO_IDH_MocA PF01408.22 gi|212223994|ref|YP_002307230.1| - 0.019 15.8 0.0 0.026 15.4 0.0 1.5 1 1 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold DpaA_N PF16924.5 gi|212223994|ref|YP_002307230.1| - 0.086 12.9 0.0 0.13 12.3 0.0 1.3 1 0 0 1 1 1 0 Dipicolinate synthase subunit A N-terminal domain SpoU_sub_bind PF08032.12 gi|212223994|ref|YP_002307230.1| - 0.18 12.1 0.0 0.36 11.1 0.0 1.5 1 0 0 1 1 1 0 RNA 2'-O ribose methyltransferase substrate binding FTR1 PF03239.14 gi|212223995|ref|YP_002307231.1| - 4.3e-65 219.9 18.8 5.2e-65 219.6 18.8 1.0 1 0 0 1 1 1 1 Iron permease FTR1 family DUF2919 PF11143.8 gi|212223995|ref|YP_002307231.1| - 0.0097 16.2 6.3 0.021 15.2 0.4 3.1 3 1 0 3 3 3 1 Protein of unknown function (DUF2919) Mito_carr PF00153.27 gi|212223995|ref|YP_002307231.1| - 0.57 10.1 0.1 0.57 10.1 0.1 2.8 2 1 1 3 3 3 0 Mitochondrial carrier protein AhpC-TSA PF00578.21 gi|212223996|ref|YP_002307232.1| - 2e-40 137.5 0.0 2.5e-40 137.2 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|212223996|ref|YP_002307232.1| - 1.7e-20 73.2 0.0 2.1e-20 72.9 0.0 1.1 1 0 0 1 1 1 1 Redoxin 1-cysPrx_C PF10417.9 gi|212223996|ref|YP_002307232.1| - 3.7e-05 23.5 0.0 7.7e-05 22.5 0.0 1.6 1 0 0 1 1 1 1 C-terminal domain of 1-Cys peroxiredoxin SCO1-SenC PF02630.14 gi|212223996|ref|YP_002307232.1| - 7e-05 22.7 0.0 0.00013 21.9 0.0 1.4 1 0 0 1 1 1 1 SCO1/SenC Thioredoxin_8 PF13905.6 gi|212223996|ref|YP_002307232.1| - 0.0092 16.3 0.0 0.015 15.6 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin-like AhpC-TSA_2 PF13911.6 gi|212223996|ref|YP_002307232.1| - 0.031 14.4 0.0 0.049 13.8 0.0 1.3 1 0 0 1 1 1 0 AhpC/TSA antioxidant enzyme DUF3471 PF11954.8 gi|212223996|ref|YP_002307232.1| - 0.031 14.7 0.0 0.087 13.3 0.0 2.0 1 1 0 1 1 1 0 Domain of unknown function (DUF3471) SeqA_N PF17206.3 gi|212223996|ref|YP_002307232.1| - 0.17 11.2 0.4 0.34 10.3 0.4 1.4 1 0 0 1 1 1 0 SeqA protein N-terminal domain FMN_red PF03358.15 gi|212223997|ref|YP_002307233.1| - 4.8e-28 97.9 0.0 6.2e-28 97.5 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.17 gi|212223997|ref|YP_002307233.1| - 3.4e-10 40.0 0.0 4.6e-10 39.5 0.0 1.3 1 0 0 1 1 1 1 Flavodoxin-like fold Flavodoxin_5 PF12724.7 gi|212223997|ref|YP_002307233.1| - 0.015 15.5 0.0 0.04 14.1 0.0 1.7 1 1 0 1 1 1 0 Flavodoxin domain Flavodoxin_1 PF00258.25 gi|212223997|ref|YP_002307233.1| - 0.036 14.3 0.0 0.86 9.8 0.0 2.6 2 1 0 2 2 2 0 Flavodoxin UPF0051 PF01458.17 gi|212223998|ref|YP_002307234.1| - 2.5e-29 102.5 1.3 3.3e-29 102.2 1.3 1.1 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) UPF0051 PF01458.17 gi|212223999|ref|YP_002307235.1| - 7.4e-64 215.4 0.0 9.1e-64 215.1 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) ABC_tran PF00005.27 gi|212224000|ref|YP_002307236.1| - 9.9e-22 77.9 0.0 1.4e-21 77.5 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|212224000|ref|YP_002307236.1| - 2.8e-11 43.8 0.0 2.3e-06 27.7 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|212224000|ref|YP_002307236.1| - 0.00011 21.7 0.3 0.1 12.0 0.1 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|212224000|ref|YP_002307236.1| - 0.00064 19.4 0.1 0.0012 18.5 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_27 PF13514.6 gi|212224000|ref|YP_002307236.1| - 0.0042 16.7 0.1 0.0069 16.0 0.1 1.3 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|212224000|ref|YP_002307236.1| - 0.0044 17.2 0.0 0.0061 16.7 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|212224000|ref|YP_002307236.1| - 0.0063 16.8 0.3 0.095 13.0 0.3 2.2 1 1 0 1 1 1 1 AAA domain AAA_25 PF13481.6 gi|212224000|ref|YP_002307236.1| - 0.0065 16.1 0.0 0.011 15.3 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_23 PF13476.6 gi|212224000|ref|YP_002307236.1| - 0.012 16.1 0.1 0.024 15.1 0.1 1.3 1 1 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|212224000|ref|YP_002307236.1| - 0.018 15.0 0.4 0.24 11.3 0.4 2.1 1 1 0 1 1 1 0 NACHT domain ACT_7 PF13840.6 gi|212224000|ref|YP_002307236.1| - 0.026 14.3 0.0 0.047 13.5 0.0 1.4 1 0 0 1 1 1 0 ACT domain RsgA_GTPase PF03193.16 gi|212224000|ref|YP_002307236.1| - 0.027 14.4 0.1 0.048 13.6 0.1 1.4 1 0 0 1 1 1 0 RsgA GTPase IstB_IS21 PF01695.17 gi|212224000|ref|YP_002307236.1| - 0.028 14.2 0.3 1.6 8.5 0.1 2.3 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_14 PF13173.6 gi|212224000|ref|YP_002307236.1| - 0.03 14.3 0.0 0.098 12.7 0.0 1.9 1 1 1 2 2 2 0 AAA domain AAA PF00004.29 gi|212224000|ref|YP_002307236.1| - 0.045 14.2 0.2 0.18 12.2 0.2 2.1 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_28 PF13521.6 gi|212224000|ref|YP_002307236.1| - 0.098 12.9 0.0 0.14 12.4 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|212224000|ref|YP_002307236.1| - 0.1 13.0 0.1 0.19 12.1 0.0 1.5 2 0 0 2 2 2 0 AAA ATPase domain AAA_13 PF13166.6 gi|212224000|ref|YP_002307236.1| - 0.1 11.2 0.0 1.2 7.7 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_24 PF13479.6 gi|212224000|ref|YP_002307236.1| - 0.13 11.9 0.0 0.24 11.1 0.0 1.4 1 0 0 1 1 1 0 AAA domain Ferritin PF00210.24 gi|212224001|ref|YP_002307237.1| - 2.4e-46 157.2 6.6 2.8e-46 157.0 6.6 1.0 1 0 0 1 1 1 1 Ferritin-like domain Lipoprotein_10 PF03202.13 gi|212224001|ref|YP_002307237.1| - 0.0074 16.7 0.4 0.02 15.3 0.1 1.8 2 0 0 2 2 2 1 Putative mycoplasma lipoprotein, C-terminal region Rubrerythrin PF02915.17 gi|212224001|ref|YP_002307237.1| - 0.023 15.1 8.3 0.032 14.6 8.3 1.4 1 0 0 1 1 1 0 Rubrerythrin Acid_phosphat_B PF03767.14 gi|212224001|ref|YP_002307237.1| - 0.12 12.0 0.4 0.37 10.3 0.1 1.8 2 0 0 2 2 2 0 HAD superfamily, subfamily IIIB (Acid phosphatase) ThiI PF02568.14 gi|212224002|ref|YP_002307238.1| - 3.7e-52 176.8 0.0 5.2e-52 176.3 0.0 1.2 1 0 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) THUMP PF02926.17 gi|212224002|ref|YP_002307238.1| - 3e-24 85.8 2.0 7.8e-24 84.4 2.0 1.7 1 0 0 1 1 1 1 THUMP domain QueC PF06508.13 gi|212224002|ref|YP_002307238.1| - 1.1e-11 44.7 0.0 1.7e-07 31.0 0.0 2.4 2 0 0 2 2 2 2 Queuosine biosynthesis protein QueC tRNA_Me_trans PF03054.16 gi|212224002|ref|YP_002307238.1| - 5.2e-06 25.5 0.0 1.1e-05 24.5 0.0 1.5 2 0 0 2 2 2 1 tRNA methyl transferase PAPS_reduct PF01507.19 gi|212224002|ref|YP_002307238.1| - 0.00017 21.7 0.0 0.00051 20.1 0.0 1.8 2 0 0 2 2 2 1 Phosphoadenosine phosphosulfate reductase family ATP_bind_3 PF01171.20 gi|212224002|ref|YP_002307238.1| - 0.0029 17.4 0.4 0.094 12.5 0.0 2.6 2 1 0 2 2 2 1 PP-loop family NAD_synthase PF02540.17 gi|212224002|ref|YP_002307238.1| - 0.015 14.4 0.0 0.032 13.4 0.0 1.5 1 0 0 1 1 1 0 NAD synthase Spt5-NGN PF03439.13 gi|212224002|ref|YP_002307238.1| - 0.065 13.1 0.1 0.16 11.9 0.1 1.7 1 0 0 1 1 1 0 Early transcription elongation factor of RNA pol II, NGN section Asn_synthase PF00733.21 gi|212224002|ref|YP_002307238.1| - 0.12 12.0 0.0 0.19 11.4 0.0 1.2 1 0 0 1 1 1 0 Asparagine synthase ThiF PF00899.21 gi|212224003|ref|YP_002307239.1| - 1.3e-46 159.0 0.0 1.9e-46 158.4 0.0 1.1 1 0 0 1 1 1 1 ThiF family TBP PF00352.21 gi|212224003|ref|YP_002307239.1| - 6.6e-06 26.0 0.0 1.4e-05 25.0 0.0 1.5 1 0 0 1 1 1 1 Transcription factor TFIID (or TATA-binding protein, TBP) Shikimate_DH PF01488.20 gi|212224003|ref|YP_002307239.1| - 0.0095 16.0 0.0 0.044 13.8 0.0 2.0 2 1 1 3 3 3 1 Shikimate / quinate 5-dehydrogenase NAD_binding_7 PF13241.6 gi|212224003|ref|YP_002307239.1| - 0.029 14.8 0.0 0.061 13.8 0.0 1.4 1 0 0 1 1 1 0 Putative NAD(P)-binding DAO PF01266.24 gi|212224003|ref|YP_002307239.1| - 0.072 12.7 0.4 0.16 11.5 0.4 1.5 1 0 0 1 1 1 0 FAD dependent oxidoreductase FGFR3_TM PF18123.1 gi|212224003|ref|YP_002307239.1| - 0.19 11.3 1.9 0.25 10.9 0.0 2.2 3 0 0 3 3 3 0 Fibroblast growth factor receptor 3 transmembrane domain Nitroreductase PF00881.24 gi|212224004|ref|YP_002307240.1| - 5.9e-31 107.8 0.4 4.4e-16 59.4 0.1 2.0 1 1 1 2 2 2 2 Nitroreductase family TM1586_NiRdase PF14512.6 gi|212224004|ref|YP_002307240.1| - 3.4e-15 56.2 0.0 8.8e-05 22.2 0.0 3.3 1 1 2 3 3 3 3 Putative TM nitroreductase Nif11 PF07862.11 gi|212224005|ref|YP_002307241.1| - 0.00067 19.9 0.2 0.0016 18.7 0.0 1.6 2 0 0 2 2 2 1 Nif11 domain UPF0180 PF03698.13 gi|212224005|ref|YP_002307241.1| - 0.036 14.2 0.1 0.045 13.9 0.1 1.3 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0180) DsbD PF02683.15 gi|212224007|ref|YP_002307243.1| - 2.4e-11 44.0 21.5 4.4e-10 39.8 21.5 2.4 1 1 0 1 1 1 1 Cytochrome C biogenesis protein transmembrane region DsbD_2 PF13386.6 gi|212224007|ref|YP_002307243.1| - 5.9e-08 32.9 18.5 1.3e-07 31.7 18.5 1.6 1 1 0 1 1 1 1 Cytochrome C biogenesis protein transmembrane region Thioredoxin_2 PF13098.6 gi|212224007|ref|YP_002307243.1| - 0.00015 22.2 0.0 0.00025 21.4 0.0 1.4 1 0 0 1 1 1 1 Thioredoxin-like domain DUF2847 PF11009.8 gi|212224007|ref|YP_002307243.1| - 0.01 15.7 0.0 0.018 15.0 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2847) TraF PF13728.6 gi|212224007|ref|YP_002307243.1| - 0.18 11.6 0.0 0.64 9.8 0.0 1.8 2 0 0 2 2 2 0 F plasmid transfer operon protein POR_N PF01855.19 gi|212224009|ref|YP_002307245.1| - 6.1e-59 199.6 0.0 9.5e-59 198.9 0.0 1.3 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg POR PF01558.18 gi|212224009|ref|YP_002307245.1| - 2e-28 99.6 0.2 4.5e-28 98.5 0.2 1.6 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase TPP_enzyme_N PF02776.18 gi|212224009|ref|YP_002307245.1| - 0.0016 18.1 0.7 0.0028 17.3 0.7 1.4 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain PFOR_II PF17147.4 gi|212224009|ref|YP_002307245.1| - 0.019 15.3 0.0 0.054 13.8 0.0 1.9 1 0 0 1 1 1 0 Pyruvate:ferredoxin oxidoreductase core domain II Transketolase_C PF02780.20 gi|212224009|ref|YP_002307245.1| - 0.038 13.9 0.0 0.08 12.8 0.0 1.5 1 0 0 1 1 1 0 Transketolase, C-terminal domain TPP_enzyme_C PF02775.21 gi|212224010|ref|YP_002307246.1| - 2.5e-32 111.8 0.5 5e-32 110.8 0.3 1.5 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PFO_beta_C PF12367.8 gi|212224010|ref|YP_002307246.1| - 1.4e-25 89.2 0.4 2.8e-25 88.2 0.4 1.5 1 0 0 1 1 1 1 Pyruvate ferredoxin oxidoreductase beta subunit C terminal Pet100 PF09803.9 gi|212224010|ref|YP_002307246.1| - 0.092 13.3 1.1 1.4 9.5 0.2 2.3 2 0 0 2 2 2 0 Pet100 AhpC-TSA PF00578.21 gi|212224011|ref|YP_002307247.1| - 7.9e-34 116.3 0.0 9e-34 116.1 0.0 1.0 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|212224011|ref|YP_002307247.1| - 8.3e-23 80.7 0.0 9e-23 80.6 0.0 1.0 1 0 0 1 1 1 1 Redoxin SCO1-SenC PF02630.14 gi|212224011|ref|YP_002307247.1| - 3.2e-07 30.3 0.0 4.5e-07 29.8 0.0 1.2 1 0 0 1 1 1 1 SCO1/SenC GSHPx PF00255.19 gi|212224011|ref|YP_002307247.1| - 0.053 13.1 0.0 0.07 12.7 0.0 1.2 1 0 0 1 1 1 0 Glutathione peroxidase Flavodoxin_1 PF00258.25 gi|212224012|ref|YP_002307248.1| - 3.2e-05 24.2 0.0 5.9e-05 23.3 0.0 1.5 1 0 0 1 1 1 1 Flavodoxin Lactamase_B PF00753.27 gi|212224012|ref|YP_002307248.1| - 7.4e-05 22.8 0.1 0.00017 21.7 0.1 1.7 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_6 PF16661.5 gi|212224012|ref|YP_002307248.1| - 0.0034 16.9 0.0 0.0056 16.1 0.0 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily domain Lactamase_B_2 PF12706.7 gi|212224012|ref|YP_002307248.1| - 0.006 16.1 0.0 0.0097 15.4 0.0 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Rubrerythrin PF02915.17 gi|212224013|ref|YP_002307249.1| - 1.9e-16 60.7 0.1 2.5e-16 60.3 0.1 1.2 1 0 0 1 1 1 1 Rubrerythrin Pyr_redox_2 PF07992.14 gi|212224014|ref|YP_002307250.1| - 1.1e-53 182.4 0.2 1.5e-53 181.9 0.2 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|212224014|ref|YP_002307250.1| - 2.5e-20 72.8 3.7 1.5e-16 60.7 0.6 3.6 4 0 0 4 4 4 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|212224014|ref|YP_002307250.1| - 4.3e-06 26.2 0.0 0.0001 21.7 0.0 2.1 1 1 1 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Rubredoxin_C PF18267.1 gi|212224014|ref|YP_002307250.1| - 1.3e-05 25.0 0.0 3.1e-05 23.8 0.0 1.8 1 0 0 1 1 1 1 Rubredoxin NAD+ reductase C-terminal domain DAO PF01266.24 gi|212224014|ref|YP_002307250.1| - 5.5e-05 22.9 1.2 0.063 12.8 0.0 3.4 4 0 0 4 4 4 1 FAD dependent oxidoreductase 3HCDH_N PF02737.18 gi|212224014|ref|YP_002307250.1| - 9.2e-05 22.4 0.3 0.0002 21.3 0.0 1.7 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Lycopene_cycl PF05834.12 gi|212224014|ref|YP_002307250.1| - 0.002 17.3 0.0 1.2 8.1 0.0 2.2 2 0 0 2 2 2 2 Lycopene cyclase protein FAD_binding_3 PF01494.19 gi|212224014|ref|YP_002307250.1| - 0.0033 16.7 0.7 0.51 9.5 0.0 2.7 3 0 0 3 3 3 1 FAD binding domain TrkA_N PF02254.18 gi|212224014|ref|YP_002307250.1| - 0.0064 16.7 0.3 4.2 7.7 0.0 3.2 3 0 0 3 3 3 1 TrkA-N domain GIDA PF01134.22 gi|212224014|ref|YP_002307250.1| - 0.0073 15.4 0.2 0.046 12.8 0.0 2.3 3 0 0 3 3 3 1 Glucose inhibited division protein A ApbA PF02558.16 gi|212224014|ref|YP_002307250.1| - 0.015 15.0 0.0 0.072 12.7 0.0 2.1 2 0 0 2 2 2 0 Ketopantoate reductase PanE/ApbA K_oxygenase PF13434.6 gi|212224014|ref|YP_002307250.1| - 0.028 13.6 0.0 0.094 11.8 0.0 1.8 2 0 0 2 2 2 0 L-lysine 6-monooxygenase (NADPH-requiring) NAD_binding_8 PF13450.6 gi|212224014|ref|YP_002307250.1| - 0.03 14.6 0.4 10 6.5 0.3 2.8 3 0 0 3 3 2 0 NAD(P)-binding Rossmann-like domain NAD_Gly3P_dh_N PF01210.23 gi|212224014|ref|YP_002307250.1| - 0.034 14.1 0.0 0.076 13.0 0.0 1.6 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus HI0933_like PF03486.14 gi|212224014|ref|YP_002307250.1| - 0.043 12.5 0.6 2.7 6.6 0.1 2.9 3 0 0 3 3 3 0 HI0933-like protein NAD_binding_2 PF03446.15 gi|212224014|ref|YP_002307250.1| - 0.13 12.4 0.0 0.28 11.3 0.0 1.5 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase Rubrerythrin PF02915.17 gi|212224015|ref|YP_002307251.1| - 8.3e-28 97.5 12.2 1.2e-26 93.7 12.2 2.0 1 1 0 1 1 1 1 Rubrerythrin Ferritin PF00210.24 gi|212224015|ref|YP_002307251.1| - 0.00041 20.3 5.0 0.0007 19.5 5.0 1.4 1 1 0 1 1 1 1 Ferritin-like domain RE_AlwI PF09491.10 gi|212224015|ref|YP_002307251.1| - 0.028 13.2 0.0 0.044 12.6 0.0 1.2 1 0 0 1 1 1 0 AlwI restriction endonuclease Cys_rich_CPCC PF14206.6 gi|212224015|ref|YP_002307251.1| - 0.038 13.8 2.1 0.089 12.6 2.1 1.6 1 0 0 1 1 1 0 Cysteine-rich CPCC Rubredoxin PF00301.20 gi|212224015|ref|YP_002307251.1| - 0.15 12.1 4.8 2.5 8.2 0.9 2.3 1 1 1 2 2 2 0 Rubredoxin zf-FPG_IleRS PF06827.14 gi|212224015|ref|YP_002307251.1| - 0.19 11.6 1.9 4.2 7.3 0.2 2.5 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS NRDD PF13597.6 gi|212224015|ref|YP_002307251.1| - 0.37 9.5 3.6 0.21 10.3 1.4 1.6 1 1 1 2 2 2 0 Anaerobic ribonucleoside-triphosphate reductase Mu-like_Com PF10122.9 gi|212224015|ref|YP_002307251.1| - 0.51 9.8 2.8 0.78 9.2 1.0 2.0 1 1 1 2 2 2 0 Mu-like prophage protein Com DNA_ligase_ZBD PF03119.16 gi|212224015|ref|YP_002307251.1| - 2 8.5 9.4 3.9 7.6 0.5 2.5 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain Zn-C2H2_12 PF18112.1 gi|212224015|ref|YP_002307251.1| - 5.4 7.6 7.8 16 6.0 0.5 2.8 2 0 0 2 2 2 0 Autophagy receptor zinc finger-C2H2 domain Rubredoxin PF00301.20 gi|212224016|ref|YP_002307252.1| - 8.9e-26 89.7 5.4 9.8e-26 89.5 5.4 1.0 1 0 0 1 1 1 1 Rubredoxin zf-RanBP PF00641.18 gi|212224016|ref|YP_002307252.1| - 0.00093 18.5 3.5 0.37 10.2 0.2 2.2 2 0 0 2 2 2 2 Zn-finger in Ran binding protein and others zf-Sec23_Sec24 PF04810.15 gi|212224016|ref|YP_002307252.1| - 0.0011 18.9 0.3 0.24 11.5 0.0 2.1 2 0 0 2 2 2 2 Sec23/Sec24 zinc finger Vps36-NZF-N PF16988.5 gi|212224016|ref|YP_002307252.1| - 0.003 16.9 1.8 0.29 10.6 0.0 2.1 2 0 0 2 2 2 2 Vacuolar protein sorting 36 NZF-N zinc-finger domain A2L_zn_ribbon PF08792.10 gi|212224016|ref|YP_002307252.1| - 0.025 14.3 1.4 5.4 6.8 0.3 2.2 2 0 0 2 2 2 0 A2L zinc ribbon domain PHD_4 PF16866.5 gi|212224016|ref|YP_002307252.1| - 0.082 13.0 3.8 0.71 10.0 3.8 2.0 1 1 0 1 1 1 0 PHD-finger RbpA PF13397.6 gi|212224016|ref|YP_002307252.1| - 0.1 13.2 0.4 2.4 8.8 0.1 2.0 1 1 1 2 2 2 0 RNA polymerase-binding protein ADK_lid PF05191.14 gi|212224016|ref|YP_002307252.1| - 0.13 12.2 1.9 0.54 10.3 1.9 1.8 1 1 0 1 1 1 0 Adenylate kinase, active site lid zf-MIZ PF02891.20 gi|212224016|ref|YP_002307252.1| - 0.14 11.9 3.5 1.4 8.7 0.2 2.1 2 0 0 2 2 2 0 MIZ/SP-RING zinc finger TF_Zn_Ribbon PF08271.12 gi|212224016|ref|YP_002307252.1| - 0.51 9.9 4.9 6 6.5 0.4 2.3 1 1 1 2 2 2 0 TFIIB zinc-binding Zn_ribbon_SprT PF17283.2 gi|212224016|ref|YP_002307252.1| - 2 8.4 4.9 8 6.5 0.3 2.1 2 0 0 2 2 2 0 SprT-like zinc ribbon domain Desulfoferrodox PF01880.18 gi|212224017|ref|YP_002307253.1| - 1.5e-32 112.1 0.1 1.7e-32 111.9 0.1 1.0 1 0 0 1 1 1 1 Desulfoferrodoxin SoxY PF13501.6 gi|212224017|ref|YP_002307253.1| - 0.02 15.1 0.0 0.024 14.9 0.0 1.1 1 0 0 1 1 1 0 Sulfur oxidation protein SoxY FeS_assembly_P PF01883.19 gi|212224018|ref|YP_002307254.1| - 5.2e-06 26.5 0.0 7.3e-06 26.1 0.0 1.2 1 0 0 1 1 1 1 Iron-sulfur cluster assembly protein FeS_assembly_P PF01883.19 gi|212224019|ref|YP_002307255.1| - 1.6e-11 44.2 0.3 2.1e-11 43.8 0.3 1.2 1 0 0 1 1 1 1 Iron-sulfur cluster assembly protein BACK PF07707.15 gi|212224019|ref|YP_002307255.1| - 0.062 13.4 0.0 0.097 12.8 0.0 1.3 1 0 0 1 1 1 0 BTB And C-terminal Kelch Rubrerythrin PF02915.17 gi|212224020|ref|YP_002307256.1| - 1.8e-31 109.3 7.7 2.1e-31 109.1 7.7 1.1 1 0 0 1 1 1 1 Rubrerythrin Ferritin_2 PF13668.6 gi|212224020|ref|YP_002307256.1| - 0.0024 18.1 1.0 0.61 10.3 0.1 2.2 2 0 0 2 2 2 2 Ferritin-like domain Nexin_C PF08628.12 gi|212224020|ref|YP_002307256.1| - 0.047 14.3 0.0 0.089 13.4 0.0 1.5 1 1 0 1 1 1 0 Sorting nexin C terminal zf-C4H2 PF10146.9 gi|212224020|ref|YP_002307256.1| - 0.097 13.0 3.6 0.12 12.7 0.9 1.8 1 1 1 2 2 2 0 Zinc finger-containing protein DUF896 PF05979.12 gi|212224020|ref|YP_002307256.1| - 0.67 9.9 4.0 0.21 11.5 0.7 1.9 3 0 0 3 3 3 0 Bacterial protein of unknown function (DUF896) Rubrerythrin PF02915.17 gi|212224021|ref|YP_002307257.1| - 1.1e-08 35.5 0.4 1.3e-08 35.3 0.4 1.1 1 0 0 1 1 1 1 Rubrerythrin DUF2383 PF09537.10 gi|212224021|ref|YP_002307257.1| - 1.6e-05 25.2 0.0 2.1e-05 24.8 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF2383) Ferritin_2 PF13668.6 gi|212224021|ref|YP_002307257.1| - 0.11 12.6 0.6 0.15 12.3 0.6 1.1 1 0 0 1 1 1 0 Ferritin-like domain Rubrerythrin PF02915.17 gi|212224022|ref|YP_002307258.1| - 5.2e-17 62.5 13.2 6.1e-17 62.3 13.2 1.1 1 0 0 1 1 1 1 Rubrerythrin Ferritin_2 PF13668.6 gi|212224022|ref|YP_002307258.1| - 7.9e-08 32.6 2.1 0.0061 16.8 0.2 2.1 2 0 0 2 2 2 2 Ferritin-like domain DUF2383 PF09537.10 gi|212224022|ref|YP_002307258.1| - 0.00011 22.5 1.8 0.16 12.3 0.2 2.3 2 0 0 2 2 2 2 Domain of unknown function (DUF2383) DUF2202 PF09968.9 gi|212224022|ref|YP_002307258.1| - 0.002 18.0 1.8 0.0027 17.6 1.8 1.2 1 0 0 1 1 1 1 Uncharacterized protein domain (DUF2202) Coat_F PF07875.12 gi|212224022|ref|YP_002307258.1| - 0.066 13.4 0.1 1.6 9.0 0.0 2.2 2 0 0 2 2 2 0 Coat F domain Acetyltransf_1 PF00583.25 gi|212224023|ref|YP_002307259.1| - 5.1e-16 59.0 0.1 6.6e-16 58.6 0.1 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|212224023|ref|YP_002307259.1| - 1.5e-11 44.6 0.1 2.3e-11 43.9 0.1 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|212224023|ref|YP_002307259.1| - 7.5e-09 35.6 0.0 2.6e-08 33.9 0.0 1.8 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|212224023|ref|YP_002307259.1| - 6.8e-06 26.2 0.0 3.5e-05 23.9 0.0 1.9 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|212224023|ref|YP_002307259.1| - 0.0057 16.6 0.0 0.009 16.0 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_CG PF14542.6 gi|212224023|ref|YP_002307259.1| - 0.024 14.8 0.0 0.052 13.7 0.0 1.7 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase Acetyltransf_3 PF13302.7 gi|212224023|ref|YP_002307259.1| - 0.04 14.6 0.0 0.049 14.3 0.0 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_15 PF17013.5 gi|212224023|ref|YP_002307259.1| - 0.086 12.3 0.0 0.11 12.0 0.0 1.6 1 1 0 1 1 1 0 Putative acetyl-transferase DUF420 PF04238.12 gi|212224024|ref|YP_002307260.1| - 0.00018 21.8 13.1 0.018 15.3 8.2 2.1 1 1 1 2 2 2 2 Protein of unknown function (DUF420) EamA PF00892.20 gi|212224024|ref|YP_002307260.1| - 0.00098 19.3 9.3 0.0014 18.8 9.0 1.4 1 1 0 1 1 1 1 EamA-like transporter family Cytochrom_B561 PF03188.16 gi|212224024|ref|YP_002307260.1| - 0.0049 17.0 17.4 1.3 9.2 4.9 2.9 1 1 0 2 2 2 2 Eukaryotic cytochrome b561 DUF716 PF04819.12 gi|212224024|ref|YP_002307260.1| - 0.01 15.5 1.2 0.01 15.5 1.2 2.0 1 1 1 2 2 2 0 Family of unknown function (DUF716) DUF1772 PF08592.11 gi|212224024|ref|YP_002307260.1| - 0.073 13.4 5.7 0.1 12.9 1.3 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF1772) DUF4079 PF13301.6 gi|212224024|ref|YP_002307260.1| - 0.37 10.9 13.2 1.8 8.7 13.2 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF4079) DOMON PF03351.17 gi|212224025|ref|YP_002307261.1| - 1.3e-29 103.0 0.0 1.7e-29 102.6 0.0 1.2 1 0 0 1 1 1 1 DOMON domain EB_dh PF09459.10 gi|212224025|ref|YP_002307261.1| - 2e-06 28.0 0.4 2.4e-06 27.7 0.4 1.1 1 0 0 1 1 1 1 Ethylbenzene dehydrogenase CDH-cyt PF16010.5 gi|212224025|ref|YP_002307261.1| - 0.005 16.5 0.1 0.017 14.8 0.0 1.8 1 1 1 2 2 2 1 Cytochrome domain of cellobiose dehydrogenase LPAM_1 PF08139.12 gi|212224025|ref|YP_002307261.1| - 0.62 10.7 3.3 3.4 8.3 3.3 2.3 1 1 0 1 1 1 0 Prokaryotic membrane lipoprotein lipid attachment site Rubrerythrin PF02915.17 gi|212224026|ref|YP_002307262.1| - 2e-13 50.9 11.6 3.2e-13 50.3 11.6 1.3 1 0 0 1 1 1 1 Rubrerythrin Ferritin_2 PF13668.6 gi|212224026|ref|YP_002307262.1| - 0.023 14.9 1.3 0.14 12.4 1.3 2.1 1 1 0 1 1 1 0 Ferritin-like domain PPP5 PF08321.12 gi|212224026|ref|YP_002307262.1| - 0.57 10.5 5.5 0.23 11.8 2.5 1.9 1 1 1 2 2 2 0 PPP5 TPR repeat region tRNA-synt_His PF13393.6 gi|212224027|ref|YP_002307263.1| - 4.4e-30 105.0 0.0 5e-27 95.0 0.0 2.3 1 1 0 1 1 1 1 Histidyl-tRNA synthetase HisG PF01634.18 gi|212224028|ref|YP_002307264.1| - 1.5e-51 174.6 0.1 1.8e-51 174.3 0.1 1.1 1 0 0 1 1 1 1 ATP phosphoribosyltransferase ComZ PF10815.8 gi|212224028|ref|YP_002307264.1| - 0.0068 16.4 0.0 0.51 10.4 0.0 2.4 2 0 0 2 2 2 2 ComZ Histidinol_dh PF00815.20 gi|212224029|ref|YP_002307265.1| - 2.3e-133 445.1 0.0 4.5e-130 434.3 0.0 2.0 1 1 0 1 1 1 1 Histidinol dehydrogenase Glyco_transf_9 PF01075.17 gi|212224029|ref|YP_002307265.1| - 0.03 13.6 0.0 0.058 12.7 0.0 1.4 1 0 0 1 1 1 0 Glycosyltransferase family 9 (heptosyltransferase) IGPD PF00475.18 gi|212224030|ref|YP_002307266.1| - 1.2e-37 129.4 0.1 1.5e-37 129.1 0.1 1.1 1 0 0 1 1 1 1 Imidazoleglycerol-phosphate dehydratase GATase PF00117.28 gi|212224031|ref|YP_002307267.1| - 7e-22 78.1 0.0 8.7e-22 77.8 0.0 1.1 1 0 0 1 1 1 1 Glutamine amidotransferase class-I GATase_3 PF07685.14 gi|212224031|ref|YP_002307267.1| - 0.0002 21.0 0.0 0.00028 20.5 0.0 1.3 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain Peptidase_C26 PF07722.13 gi|212224031|ref|YP_002307267.1| - 0.00085 19.1 0.1 0.083 12.6 0.0 2.2 2 0 0 2 2 2 2 Peptidase C26 His_biosynth PF00977.21 gi|212224032|ref|YP_002307268.1| - 4.8e-59 199.6 1.1 5.5e-59 199.4 1.1 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein FMN_dh PF01070.18 gi|212224032|ref|YP_002307268.1| - 0.00011 21.3 0.0 0.016 14.3 0.0 2.1 2 0 0 2 2 2 2 FMN-dependent dehydrogenase IGPS PF00218.21 gi|212224032|ref|YP_002307268.1| - 0.0032 16.7 0.1 0.56 9.3 0.0 2.1 2 0 0 2 2 2 2 Indole-3-glycerol phosphate synthase IMPDH PF00478.25 gi|212224032|ref|YP_002307268.1| - 0.0076 15.3 0.1 0.026 13.5 0.1 1.7 2 0 0 2 2 2 1 IMP dehydrogenase / GMP reductase domain Glu_synthase PF01645.17 gi|212224032|ref|YP_002307268.1| - 0.014 14.5 0.0 0.021 14.0 0.0 1.2 1 0 0 1 1 1 0 Conserved region in glutamate synthase NanE PF04131.14 gi|212224032|ref|YP_002307268.1| - 0.017 14.4 0.0 0.092 11.9 0.0 1.9 2 0 0 2 2 2 0 Putative N-acetylmannosamine-6-phosphate epimerase His_biosynth PF00977.21 gi|212224033|ref|YP_002307269.1| - 2.4e-89 298.7 1.5 2.7e-89 298.6 1.5 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein ThiG PF05690.14 gi|212224033|ref|YP_002307269.1| - 7.8e-10 38.5 0.1 0.001 18.5 0.0 2.2 2 0 0 2 2 2 2 Thiazole biosynthesis protein ThiG NMO PF03060.15 gi|212224033|ref|YP_002307269.1| - 7.8e-09 35.4 1.0 8.4e-06 25.4 0.4 2.1 1 1 0 2 2 2 2 Nitronate monooxygenase Dus PF01207.17 gi|212224033|ref|YP_002307269.1| - 8.5e-08 31.6 0.1 1.3e-05 24.5 0.0 2.1 2 0 0 2 2 2 2 Dihydrouridine synthase (Dus) TMP-TENI PF02581.17 gi|212224033|ref|YP_002307269.1| - 7.6e-07 28.6 0.2 0.011 15.0 0.0 2.3 2 0 0 2 2 2 2 Thiamine monophosphate synthase IMPDH PF00478.25 gi|212224033|ref|YP_002307269.1| - 2.7e-05 23.3 0.4 0.17 10.8 0.0 2.1 2 0 0 2 2 2 2 IMP dehydrogenase / GMP reductase domain G3P_antiterm PF04309.12 gi|212224033|ref|YP_002307269.1| - 0.00011 21.7 0.3 0.027 13.9 0.1 2.2 2 0 0 2 2 2 2 Glycerol-3-phosphate responsive antiterminator DHO_dh PF01180.21 gi|212224033|ref|YP_002307269.1| - 0.00032 20.0 0.1 0.62 9.2 0.0 2.1 2 0 0 2 2 2 2 Dihydroorotate dehydrogenase SAP PF02037.27 gi|212224033|ref|YP_002307269.1| - 0.004 16.9 0.2 0.018 14.8 0.0 2.1 2 0 0 2 2 2 1 SAP domain FMN_dh PF01070.18 gi|212224033|ref|YP_002307269.1| - 0.0056 15.7 1.3 0.3 10.0 1.2 2.3 1 1 0 1 1 1 1 FMN-dependent dehydrogenase NanE PF04131.14 gi|212224033|ref|YP_002307269.1| - 0.014 14.6 0.2 0.76 8.9 0.0 2.3 2 0 0 2 2 2 0 Putative N-acetylmannosamine-6-phosphate epimerase PcrB PF01884.17 gi|212224033|ref|YP_002307269.1| - 0.019 14.5 0.7 0.031 13.7 0.2 1.6 2 0 0 2 2 2 0 PcrB family Radical_SAM PF04055.21 gi|212224033|ref|YP_002307269.1| - 0.024 15.0 0.4 0.42 11.0 0.2 2.4 1 1 1 2 2 2 0 Radical SAM superfamily Trp_syntA PF00290.20 gi|212224033|ref|YP_002307269.1| - 0.046 12.6 0.1 0.081 11.8 0.1 1.4 1 0 0 1 1 1 0 Tryptophan synthase alpha chain CdiA_C PF18451.1 gi|212224033|ref|YP_002307269.1| - 0.089 13.0 0.0 0.47 10.7 0.0 2.2 3 0 0 3 3 3 0 Contact-dependent growth inhibition CdiA C-terminal domain PRA-CH PF01502.18 gi|212224034|ref|YP_002307270.1| - 1.5e-31 108.0 0.0 2.5e-31 107.3 0.0 1.4 1 0 0 1 1 1 1 Phosphoribosyl-AMP cyclohydrolase PRA-PH PF01503.17 gi|212224034|ref|YP_002307270.1| - 4.8e-14 52.6 0.6 7.6e-14 51.9 0.6 1.3 1 0 0 1 1 1 1 Phosphoribosyl-ATP pyrophosphohydrolase MazG PF03819.17 gi|212224034|ref|YP_002307270.1| - 0.15 12.3 0.3 0.15 12.3 0.3 1.8 2 0 0 2 2 2 0 MazG nucleotide pyrophosphohydrolase domain Aminotran_1_2 PF00155.21 gi|212224035|ref|YP_002307271.1| - 2.6e-51 174.9 0.0 3.2e-51 174.6 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Cys_Met_Meta_PP PF01053.20 gi|212224035|ref|YP_002307271.1| - 2.6e-06 26.2 0.0 4.1e-06 25.6 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_5 PF00266.19 gi|212224035|ref|YP_002307271.1| - 1.7e-05 24.0 0.0 2.4e-05 23.5 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V Alliinase_C PF04864.13 gi|212224035|ref|YP_002307271.1| - 2.1e-05 23.6 0.0 3.7e-05 22.8 0.0 1.3 1 1 0 1 1 1 1 Allinase HAD_2 PF13419.6 gi|212224036|ref|YP_002307272.1| - 2.3e-05 24.5 2.6 0.069 13.2 0.0 3.1 2 1 1 3 3 3 2 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|212224036|ref|YP_002307272.1| - 0.0024 18.2 0.4 0.094 13.0 0.4 2.8 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.6 gi|212224036|ref|YP_002307272.1| - 0.086 13.0 0.0 5.2 7.2 0.0 2.3 2 0 0 2 2 2 0 Haloacid dehalogenase-like hydrolase P5CR_dimer PF14748.6 gi|212224037|ref|YP_002307273.1| - 2e-37 127.6 0.1 4.8e-37 126.3 0.1 1.7 1 0 0 1 1 1 1 Pyrroline-5-carboxylate reductase dimerisation F420_oxidored PF03807.17 gi|212224037|ref|YP_002307273.1| - 8.9e-21 74.3 2.7 8.9e-21 74.3 2.7 1.6 2 0 0 2 2 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.15 gi|212224037|ref|YP_002307273.1| - 1.9e-08 34.6 0.2 4.9e-08 33.3 0.2 1.7 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase ApbA PF02558.16 gi|212224037|ref|YP_002307273.1| - 4.5e-07 29.6 1.9 1.3e-06 28.1 1.6 1.9 2 1 0 2 2 1 1 Ketopantoate reductase PanE/ApbA IlvN PF07991.12 gi|212224037|ref|YP_002307273.1| - 1.8e-06 27.6 0.2 2.6e-06 27.1 0.2 1.2 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain Rossmann-like PF10727.9 gi|212224037|ref|YP_002307273.1| - 2.5e-06 27.4 1.6 4.7e-06 26.5 1.6 1.6 1 0 0 1 1 1 1 Rossmann-like domain NAD_Gly3P_dh_N PF01210.23 gi|212224037|ref|YP_002307273.1| - 4e-06 26.9 4.3 0.00099 19.1 4.3 2.3 1 1 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 2-Hacid_dh_C PF02826.19 gi|212224037|ref|YP_002307273.1| - 5.5e-06 25.8 0.2 1.1e-05 24.9 0.2 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 3HCDH_N PF02737.18 gi|212224037|ref|YP_002307273.1| - 3.5e-05 23.8 0.4 3.5e-05 23.8 0.4 1.8 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Shikimate_DH PF01488.20 gi|212224037|ref|YP_002307273.1| - 9.4e-05 22.5 0.4 0.0002 21.4 0.4 1.6 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase TrkA_N PF02254.18 gi|212224037|ref|YP_002307273.1| - 0.00011 22.4 0.2 0.00023 21.4 0.2 1.6 1 0 0 1 1 1 1 TrkA-N domain PDH PF02153.17 gi|212224037|ref|YP_002307273.1| - 0.00026 20.1 0.1 0.00034 19.7 0.1 1.4 1 1 0 1 1 1 1 Prephenate dehydrogenase NmrA PF05368.13 gi|212224037|ref|YP_002307273.1| - 0.00027 20.6 0.2 0.0004 20.0 0.2 1.4 1 0 0 1 1 1 1 NmrA-like family UDPG_MGDP_dh_N PF03721.14 gi|212224037|ref|YP_002307273.1| - 0.00035 20.2 1.0 0.00084 19.0 1.0 1.8 1 1 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NAD_binding_10 PF13460.6 gi|212224037|ref|YP_002307273.1| - 0.00061 19.7 0.2 0.001 19.0 0.2 1.5 1 0 0 1 1 1 1 NAD(P)H-binding Sacchrp_dh_NADP PF03435.18 gi|212224037|ref|YP_002307273.1| - 0.002 18.4 0.6 0.0044 17.3 0.6 1.7 1 1 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain CoA_binding_2 PF13380.6 gi|212224037|ref|YP_002307273.1| - 0.0025 18.3 0.5 0.0051 17.3 0.4 1.7 2 0 0 2 2 1 1 CoA binding domain adh_short PF00106.25 gi|212224037|ref|YP_002307273.1| - 0.0027 17.2 1.8 0.0056 16.2 1.4 1.8 2 1 0 2 2 2 1 short chain dehydrogenase ThiF PF00899.21 gi|212224037|ref|YP_002307273.1| - 0.017 14.5 1.9 0.028 13.8 1.9 1.3 1 0 0 1 1 1 0 ThiF family Epimerase PF01370.21 gi|212224037|ref|YP_002307273.1| - 0.032 13.7 0.0 0.043 13.3 0.0 1.2 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family adh_short_C2 PF13561.6 gi|212224037|ref|YP_002307273.1| - 0.041 13.4 0.2 0.079 12.5 0.2 1.5 1 0 0 1 1 1 0 Enoyl-(Acyl carrier protein) reductase OCC1 PF15506.6 gi|212224037|ref|YP_002307273.1| - 0.045 13.9 0.0 0.12 12.5 0.0 1.6 1 0 0 1 1 1 0 OCC1 family Pyr_redox PF00070.27 gi|212224037|ref|YP_002307273.1| - 0.047 14.3 5.0 0.39 11.3 4.4 2.7 2 1 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_2 PF07992.14 gi|212224037|ref|YP_002307273.1| - 0.41 9.8 3.2 0.91 8.7 3.0 1.7 1 1 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 gi|212224037|ref|YP_002307273.1| - 9.6 5.7 9.2 5.6 6.4 5.4 2.0 1 1 1 2 2 2 0 FAD dependent oxidoreductase ATPase PF06745.13 gi|212224038|ref|YP_002307274.1| - 6.6e-50 169.6 0.4 7.6e-50 169.4 0.4 1.0 1 0 0 1 1 1 1 KaiC GvpD PF07088.11 gi|212224038|ref|YP_002307274.1| - 1.7e-14 53.3 1.1 3.8e-14 52.2 1.1 1.6 1 1 0 1 1 1 1 GvpD gas vesicle protein AAA_24 PF13479.6 gi|212224038|ref|YP_002307274.1| - 1.1e-07 31.8 0.5 5.7e-05 22.9 0.5 2.4 1 1 0 1 1 1 1 AAA domain AAA_25 PF13481.6 gi|212224038|ref|YP_002307274.1| - 2.6e-07 30.4 0.0 3.7e-07 29.9 0.0 1.2 1 0 0 1 1 1 1 AAA domain PAXNEB PF05625.11 gi|212224038|ref|YP_002307274.1| - 8.1e-07 28.5 0.1 0.00057 19.1 0.1 2.1 1 1 1 2 2 2 2 PAXNEB protein DnaB_C PF03796.15 gi|212224038|ref|YP_002307274.1| - 1.1e-05 24.9 0.0 1.7e-05 24.3 0.0 1.3 1 1 0 1 1 1 1 DnaB-like helicase C terminal domain IstB_IS21 PF01695.17 gi|212224038|ref|YP_002307274.1| - 2.7e-05 24.0 0.0 6.4e-05 22.8 0.0 1.7 1 1 1 2 2 2 1 IstB-like ATP binding protein RecA PF00154.21 gi|212224038|ref|YP_002307274.1| - 6.2e-05 22.6 0.0 9e-05 22.1 0.0 1.2 1 0 0 1 1 1 1 recA bacterial DNA recombination protein MEDS PF14417.6 gi|212224038|ref|YP_002307274.1| - 8.9e-05 22.4 0.0 0.0011 18.8 0.0 2.1 1 1 1 2 2 2 1 MEDS: MEthanogen/methylotroph, DcmR Sensory domain AAA_19 PF13245.6 gi|212224038|ref|YP_002307274.1| - 0.00013 22.4 0.0 0.00017 22.0 0.0 1.2 1 0 0 1 1 1 1 AAA domain DUF2075 PF09848.9 gi|212224038|ref|YP_002307274.1| - 0.00041 19.7 0.2 0.00067 19.0 0.2 1.4 1 1 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) AAA_22 PF13401.6 gi|212224038|ref|YP_002307274.1| - 0.00044 20.5 0.0 0.00061 20.1 0.0 1.2 1 0 0 1 1 1 1 AAA domain Rad51 PF08423.11 gi|212224038|ref|YP_002307274.1| - 0.001 18.4 0.1 0.0013 18.1 0.1 1.2 1 0 0 1 1 1 1 Rad51 ATPase_2 PF01637.18 gi|212224038|ref|YP_002307274.1| - 0.0029 17.5 0.1 0.0037 17.2 0.1 1.1 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_14 PF13173.6 gi|212224038|ref|YP_002307274.1| - 0.0033 17.5 0.4 0.014 15.4 0.4 2.1 1 1 0 1 1 1 1 AAA domain AAA_28 PF13521.6 gi|212224038|ref|YP_002307274.1| - 0.027 14.7 0.0 0.041 14.1 0.0 1.3 1 0 0 1 1 1 0 AAA domain TIP49 PF06068.13 gi|212224038|ref|YP_002307274.1| - 0.035 13.3 0.1 0.053 12.7 0.1 1.2 1 0 0 1 1 1 0 TIP49 P-loop domain T2SSE PF00437.20 gi|212224038|ref|YP_002307274.1| - 0.068 12.2 0.1 0.1 11.7 0.1 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_30 PF13604.6 gi|212224038|ref|YP_002307274.1| - 0.11 12.2 0.0 0.19 11.5 0.0 1.3 1 0 0 1 1 1 0 AAA domain DAP3 PF10236.9 gi|212224038|ref|YP_002307274.1| - 0.11 11.6 0.0 0.18 10.9 0.0 1.2 1 0 0 1 1 1 0 Mitochondrial ribosomal death-associated protein 3 AAA_16 PF13191.6 gi|212224038|ref|YP_002307274.1| - 0.14 12.5 0.1 0.18 12.2 0.1 1.4 1 1 0 1 1 1 0 AAA ATPase domain UvrD-helicase PF00580.21 gi|212224038|ref|YP_002307274.1| - 0.19 11.2 1.3 0.56 9.7 0.3 1.8 1 1 1 2 2 2 0 UvrD/REP helicase N-terminal domain UPF0020 PF01170.18 gi|212224040|ref|YP_002307276.1| - 5.5e-27 94.7 0.0 6.2e-26 91.3 0.0 2.1 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_31 PF13847.6 gi|212224040|ref|YP_002307276.1| - 5.8e-13 48.9 0.0 9.6e-13 48.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain THUMP PF02926.17 gi|212224040|ref|YP_002307276.1| - 9.5e-12 45.2 0.0 1.7e-11 44.4 0.0 1.5 1 0 0 1 1 1 1 THUMP domain Methyltransf_25 PF13649.6 gi|212224040|ref|YP_002307276.1| - 1.1e-08 35.6 0.0 2.2e-08 34.7 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain N6_Mtase PF02384.16 gi|212224040|ref|YP_002307276.1| - 2.1e-07 30.5 0.0 3.5e-07 29.8 0.0 1.4 1 0 0 1 1 1 1 N-6 DNA Methylase Methyltransf_11 PF08241.12 gi|212224040|ref|YP_002307276.1| - 2.9e-07 31.0 0.0 8e-07 29.6 0.0 1.8 1 1 0 1 1 1 1 Methyltransferase domain N6_N4_Mtase PF01555.18 gi|212224040|ref|YP_002307276.1| - 4.7e-06 26.5 0.0 0.00081 19.2 0.0 2.2 2 0 0 2 2 2 1 DNA methylase Cons_hypoth95 PF03602.15 gi|212224040|ref|YP_002307276.1| - 9.1e-06 25.4 0.0 1.5e-05 24.7 0.0 1.3 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_15 PF09445.10 gi|212224040|ref|YP_002307276.1| - 0.00016 21.3 0.0 0.00027 20.6 0.0 1.3 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase MTS PF05175.14 gi|212224040|ref|YP_002307276.1| - 0.00083 18.9 0.0 0.0013 18.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Ubie_methyltran PF01209.18 gi|212224040|ref|YP_002307276.1| - 0.001 18.5 0.0 0.0017 17.7 0.0 1.3 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_23 PF13489.6 gi|212224040|ref|YP_002307276.1| - 0.0013 18.6 0.0 0.013 15.4 0.0 2.3 2 1 0 2 2 2 1 Methyltransferase domain AviRa PF11599.8 gi|212224040|ref|YP_002307276.1| - 0.0017 17.8 0.0 0.72 9.3 0.0 2.3 1 1 1 2 2 2 2 RRNA methyltransferase AviRa Methyltransf_12 PF08242.12 gi|212224040|ref|YP_002307276.1| - 0.0018 19.0 0.0 0.0058 17.4 0.0 1.8 1 1 0 1 1 1 1 Methyltransferase domain NBD_C PF17042.5 gi|212224040|ref|YP_002307276.1| - 0.019 15.5 0.0 0.049 14.2 0.0 1.6 2 0 0 2 2 2 0 Nucleotide-binding C-terminal domain MethyltransfD12 PF02086.15 gi|212224040|ref|YP_002307276.1| - 0.089 12.5 0.0 0.18 11.4 0.0 1.6 1 1 0 1 1 1 0 D12 class N6 adenine-specific DNA methyltransferase Cas_Cas6 PF01881.16 gi|212224041|ref|YP_002307277.1| - 4.1e-21 76.1 1.9 1e-20 74.8 2.0 1.6 1 1 1 2 2 2 2 CRISPR associated protein Cas6 Csm1_B PF18211.1 gi|212224042|ref|YP_002307278.1| - 1e-28 99.0 0.0 1.8e-27 95.0 0.0 2.3 2 0 0 2 2 2 1 Csm1 subunit domain B HD PF01966.22 gi|212224042|ref|YP_002307278.1| - 6.7e-08 32.8 0.1 1.7e-07 31.5 0.1 1.7 1 0 0 1 1 1 1 HD domain mCpol PF18182.1 gi|212224042|ref|YP_002307278.1| - 0.076 13.3 0.0 0.47 10.8 0.0 2.0 2 0 0 2 2 2 0 minimal CRISPR polymerase domain Rad50_zn_hook PF04423.14 gi|212224042|ref|YP_002307278.1| - 0.079 12.8 6.5 0.078 12.8 0.4 3.2 3 0 0 3 3 3 0 Rad50 zinc hook motif DZR PF12773.7 gi|212224042|ref|YP_002307278.1| - 0.081 13.0 0.3 0.14 12.2 0.3 1.3 1 0 0 1 1 1 0 Double zinc ribbon Zn-ribbon_8 PF09723.10 gi|212224042|ref|YP_002307278.1| - 0.68 10.1 4.7 4 7.7 4.9 2.1 1 1 1 2 2 2 0 Zinc ribbon domain zf-C2HC_2 PF13913.6 gi|212224042|ref|YP_002307278.1| - 2.1 8.4 4.1 16 5.5 0.4 2.4 2 0 0 2 2 2 0 zinc-finger of a C2HC-type Csm2_III-A PF03750.13 gi|212224043|ref|YP_002307279.1| - 4e-18 66.3 0.0 8e-18 65.4 0.0 1.5 1 0 0 1 1 1 1 Csm2 Type III-A RAMPs PF03787.15 gi|212224044|ref|YP_002307280.1| - 2.5e-23 83.2 0.2 3.2e-23 82.9 0.2 1.1 1 0 0 1 1 1 1 RAMP superfamily Csm4_C PF17953.1 gi|212224045|ref|YP_002307281.1| - 0.00023 20.9 0.0 0.00048 19.9 0.0 1.5 1 0 0 1 1 1 1 CRISPR Csm4 C-terminal domain Cas_Cmr3 PF09700.10 gi|212224045|ref|YP_002307281.1| - 0.033 13.6 0.1 18 4.6 0.0 2.9 1 1 2 3 3 3 0 CRISPR-associated protein (Cas_Cmr3) RAMPs PF03787.15 gi|212224045|ref|YP_002307281.1| - 0.044 13.8 0.1 0.064 13.3 0.1 1.5 1 1 0 1 1 1 0 RAMP superfamily ECSIT PF06239.11 gi|212224045|ref|YP_002307281.1| - 0.26 10.4 0.0 0.38 9.8 0.0 1.2 1 0 0 1 1 1 0 Evolutionarily conserved signalling intermediate in Toll pathway RAMPs PF03787.15 gi|212224046|ref|YP_002307282.1| - 3.8e-21 76.1 0.0 6e-21 75.5 0.0 1.3 1 0 0 1 1 1 1 RAMP superfamily Cas_DxTHG PF09455.10 gi|212224047|ref|YP_002307283.1| - 1.9e-13 50.8 0.0 9.1e-13 48.5 0.0 1.9 1 1 0 1 1 1 1 CRISPR-associated (Cas) DxTHG family tRNA-synt_2c PF01411.19 gi|212224048|ref|YP_002307284.1| - 7.6e-13 47.8 0.0 1.1e-12 47.3 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class II (A) tRNA_SAD PF07973.14 gi|212224048|ref|YP_002307284.1| - 6.2e-09 35.8 0.3 1.1e-08 35.1 0.3 1.4 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain SDF PF00375.18 gi|212224050|ref|YP_002307286.1| - 7.2e-129 430.2 35.5 8.2e-129 430.0 35.5 1.0 1 0 0 1 1 1 1 Sodium:dicarboxylate symporter family BPL_LplA_LipB PF03099.19 gi|212224051|ref|YP_002307287.1| - 2.5e-18 66.2 0.0 4.3e-18 65.5 0.0 1.3 1 0 0 1 1 1 1 Biotin/lipoate A/B protein ligase family BPL_C PF02237.17 gi|212224051|ref|YP_002307287.1| - 3.7e-10 39.5 0.7 7.1e-10 38.6 0.7 1.5 1 0 0 1 1 1 1 Biotin protein ligase C terminal domain DeoC PF01791.9 gi|212224052|ref|YP_002307288.1| - 1.7e-34 119.5 0.0 2e-34 119.3 0.0 1.0 1 0 0 1 1 1 1 DeoC/LacD family aldolase PucR PF07905.11 gi|212224052|ref|YP_002307288.1| - 0.0055 17.0 0.0 4.4 7.6 0.0 2.4 2 1 0 2 2 2 2 Purine catabolism regulatory protein-like family Apo-CIII PF05778.12 gi|212224052|ref|YP_002307288.1| - 0.15 11.7 0.0 9.6 5.9 0.0 2.2 2 0 0 2 2 2 0 Apolipoprotein CIII (Apo-CIII) PYC_OADA PF02436.18 gi|212224053|ref|YP_002307289.1| - 1.6e-56 191.2 0.0 5.9e-56 189.4 0.0 1.9 2 0 0 2 2 2 1 Conserved carboxylase domain HMGL-like PF00682.19 gi|212224053|ref|YP_002307289.1| - 3.2e-40 138.3 0.1 4.3e-40 137.9 0.1 1.1 1 0 0 1 1 1 1 HMGL-like Biotin_lipoyl PF00364.22 gi|212224053|ref|YP_002307289.1| - 3.4e-25 87.7 1.4 7e-25 86.7 1.4 1.6 1 0 0 1 1 1 1 Biotin-requiring enzyme Biotin_lipoyl_2 PF13533.6 gi|212224053|ref|YP_002307289.1| - 4.7e-15 55.2 0.2 4e-07 29.8 0.0 2.6 1 1 1 2 2 2 2 Biotin-lipoyl like HlyD_3 PF13437.6 gi|212224053|ref|YP_002307289.1| - 2.7e-05 24.8 0.1 0.057 14.1 0.0 2.5 2 0 0 2 2 2 2 HlyD family secretion protein HlyD_D23 PF16576.5 gi|212224053|ref|YP_002307289.1| - 0.00087 18.6 0.1 0.27 10.4 0.0 2.3 1 1 1 2 2 2 2 Barrel-sandwich domain of CusB or HlyD membrane-fusion PTS_EIIA_1 PF00358.20 gi|212224053|ref|YP_002307289.1| - 0.0016 18.2 0.1 0.4 10.5 0.0 2.7 1 1 1 2 2 2 1 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 RnfC_N PF13375.6 gi|212224053|ref|YP_002307289.1| - 0.003 17.5 0.0 0.016 15.2 0.0 2.2 1 1 0 1 1 1 1 RnfC Barrel sandwich hybrid domain GCV_H PF01597.19 gi|212224053|ref|YP_002307289.1| - 0.034 14.0 0.1 0.081 12.8 0.1 1.6 1 0 0 1 1 1 0 Glycine cleavage H-protein NanE PF04131.14 gi|212224053|ref|YP_002307289.1| - 0.054 12.7 0.1 0.1 11.8 0.1 1.4 1 0 0 1 1 1 0 Putative N-acetylmannosamine-6-phosphate epimerase NQRA PF05896.11 gi|212224053|ref|YP_002307289.1| - 0.089 12.2 0.1 0.21 11.0 0.1 1.6 1 1 1 2 2 2 0 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) Post_transc_reg PF13797.6 gi|212224053|ref|YP_002307289.1| - 0.098 12.5 1.1 2.5 8.0 0.1 2.5 2 0 0 2 2 2 0 Post-transcriptional regulator DEC-1_N PF04625.13 gi|212224053|ref|YP_002307289.1| - 0.21 10.6 8.3 0.37 9.8 8.3 1.3 1 0 0 1 1 1 0 DEC-1 protein, N-terminal region YqfD PF06898.11 gi|212224053|ref|YP_002307289.1| - 0.82 8.4 3.1 9.9 4.9 0.1 3.0 2 1 1 3 3 3 0 Putative stage IV sporulation protein YqfD CstA PF02554.14 gi|212224054|ref|YP_002307290.1| - 2.1e-112 375.8 29.3 2.1e-112 375.8 29.3 2.0 2 0 0 2 2 2 1 Carbon starvation protein CstA CstA_5TM PF13722.6 gi|212224054|ref|YP_002307290.1| - 3.3e-31 108.1 10.9 3.3e-31 108.1 10.9 2.8 2 1 0 2 2 2 1 5TM C-terminal transporter carbon starvation CstA ArsA_ATPase PF02374.15 gi|212224056|ref|YP_002307292.1| - 1.6e-74 250.8 0.2 2.1e-74 250.5 0.2 1.1 1 0 0 1 1 1 1 Anion-transporting ATPase AAA_31 PF13614.6 gi|212224056|ref|YP_002307292.1| - 1.7e-17 63.9 0.0 2.8e-17 63.2 0.0 1.3 1 0 0 1 1 1 1 AAA domain CbiA PF01656.23 gi|212224056|ref|YP_002307292.1| - 4.9e-13 49.2 0.0 8.2e-13 48.5 0.0 1.7 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.9 gi|212224056|ref|YP_002307292.1| - 6.3e-08 32.4 2.1 1.5e-06 27.9 0.1 2.8 3 0 0 3 3 3 1 NUBPL iron-transfer P-loop NTPase Fer4_NifH PF00142.18 gi|212224056|ref|YP_002307292.1| - 5.9e-07 29.2 0.1 1e-06 28.4 0.1 1.4 1 0 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family SRP54 PF00448.22 gi|212224056|ref|YP_002307292.1| - 6e-06 26.0 1.4 9.4e-06 25.4 0.3 1.8 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain MipZ PF09140.11 gi|212224056|ref|YP_002307292.1| - 0.00014 21.2 0.4 0.0016 17.8 0.2 2.2 1 1 1 2 2 2 1 ATPase MipZ CBP_BcsQ PF06564.12 gi|212224056|ref|YP_002307292.1| - 0.00033 20.2 0.0 0.00059 19.4 0.0 1.4 1 0 0 1 1 1 1 Cellulose biosynthesis protein BcsQ AAA_25 PF13481.6 gi|212224056|ref|YP_002307292.1| - 0.00035 20.2 0.0 0.0011 18.5 0.0 1.9 2 1 0 2 2 2 1 AAA domain ATPase PF06745.13 gi|212224056|ref|YP_002307292.1| - 0.0017 17.8 0.1 0.005 16.2 0.1 1.8 1 1 0 1 1 1 1 KaiC ATP_bind_1 PF03029.17 gi|212224056|ref|YP_002307292.1| - 0.0019 18.0 3.4 0.0023 17.8 0.2 2.5 3 1 1 4 4 4 1 Conserved hypothetical ATP binding protein PhoH PF02562.16 gi|212224056|ref|YP_002307292.1| - 0.002 17.6 0.5 0.0073 15.8 0.5 1.9 1 1 0 1 1 1 1 PhoH-like protein AAA_24 PF13479.6 gi|212224056|ref|YP_002307292.1| - 0.0042 16.8 0.6 0.01 15.5 0.6 1.8 1 1 0 1 1 1 1 AAA domain MeaB PF03308.16 gi|212224056|ref|YP_002307292.1| - 0.0052 15.8 0.0 0.01 14.8 0.0 1.4 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB NACHT PF05729.12 gi|212224056|ref|YP_002307292.1| - 0.011 15.6 0.1 0.023 14.6 0.1 1.5 1 0 0 1 1 1 0 NACHT domain AAA_5 PF07728.14 gi|212224056|ref|YP_002307292.1| - 0.024 14.6 0.2 0.71 9.9 0.0 2.3 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) CTP_synth_N PF06418.14 gi|212224056|ref|YP_002307292.1| - 0.04 13.2 0.0 0.071 12.4 0.0 1.4 1 0 0 1 1 1 0 CTP synthase N-terminus IstB_IS21 PF01695.17 gi|212224056|ref|YP_002307292.1| - 0.044 13.5 0.1 0.11 12.2 0.0 1.7 2 0 0 2 2 2 0 IstB-like ATP binding protein ResIII PF04851.15 gi|212224056|ref|YP_002307292.1| - 0.049 13.6 0.0 0.11 12.5 0.0 1.7 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit NB-ARC PF00931.22 gi|212224056|ref|YP_002307292.1| - 0.061 12.5 0.2 0.11 11.7 0.2 1.6 1 1 0 1 1 1 0 NB-ARC domain AAA_18 PF13238.6 gi|212224056|ref|YP_002307292.1| - 0.063 13.8 0.3 0.16 12.6 0.3 1.7 1 1 0 1 1 1 0 AAA domain AAA_33 PF13671.6 gi|212224056|ref|YP_002307292.1| - 0.1 12.8 0.0 0.18 12.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain CLP1_P PF16575.5 gi|212224056|ref|YP_002307292.1| - 0.1 12.4 0.1 0.4 10.5 0.0 2.0 2 0 0 2 2 2 0 mRNA cleavage and polyadenylation factor CLP1 P-loop AAA_16 PF13191.6 gi|212224056|ref|YP_002307292.1| - 0.1 13.0 0.2 0.22 11.9 0.2 1.7 1 1 0 1 1 1 0 AAA ATPase domain AAA_7 PF12775.7 gi|212224056|ref|YP_002307292.1| - 0.11 12.1 0.0 0.19 11.2 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region DUF1611 PF07755.11 gi|212224056|ref|YP_002307292.1| - 0.11 11.7 0.3 1.2 8.4 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF1611_C) P-loop domain Phostensin_N PF13916.6 gi|212224056|ref|YP_002307292.1| - 0.12 12.7 0.1 0.21 11.9 0.1 1.3 1 0 0 1 1 1 0 PP1-regulatory protein, Phostensin N-terminal DUF4774 PF15999.5 gi|212224056|ref|YP_002307292.1| - 0.13 12.1 0.3 0.28 11.1 0.3 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4774) LpxK PF02606.14 gi|212224056|ref|YP_002307292.1| - 0.14 11.2 0.5 0.25 10.4 0.5 1.3 1 0 0 1 1 1 0 Tetraacyldisaccharide-1-P 4'-kinase AAA_30 PF13604.6 gi|212224056|ref|YP_002307292.1| - 0.17 11.6 0.0 0.29 10.8 0.0 1.3 1 0 0 1 1 1 0 AAA domain GTP_EFTU PF00009.27 gi|212224056|ref|YP_002307292.1| - 0.21 11.1 1.0 5.3 6.5 0.1 2.4 2 0 0 2 2 2 0 Elongation factor Tu GTP binding domain DUF87 PF01935.17 gi|212224056|ref|YP_002307292.1| - 0.47 10.5 3.9 0.47 10.5 1.6 1.9 1 1 1 2 2 2 0 Helicase HerA, central domain AAA_26 PF13500.6 gi|212224056|ref|YP_002307292.1| - 0.66 9.8 2.8 0.56 10.0 1.1 1.7 2 0 0 2 2 2 0 AAA domain FeS_assembly_P PF01883.19 gi|212224057|ref|YP_002307293.1| - 3.5e-08 33.5 0.0 4.5e-08 33.2 0.0 1.3 1 0 0 1 1 1 1 Iron-sulfur cluster assembly protein DUF1682 PF07946.14 gi|212224058|ref|YP_002307294.1| - 0.0082 15.4 0.7 0.036 13.3 0.7 1.9 1 1 0 1 1 1 1 Protein of unknown function (DUF1682) DUF3974 PF13120.6 gi|212224058|ref|YP_002307294.1| - 0.071 13.2 0.2 0.15 12.1 0.1 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF3974) Hydrolase_4 PF12146.8 gi|212224059|ref|YP_002307295.1| - 1.5e-68 230.7 0.0 1.7e-68 230.4 0.0 1.0 1 0 0 1 1 1 1 Serine aminopeptidase, S33 Abhydrolase_1 PF00561.20 gi|212224059|ref|YP_002307295.1| - 4.9e-23 82.1 0.0 9.9e-18 64.7 0.0 2.1 1 1 1 2 2 2 2 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 gi|212224059|ref|YP_002307295.1| - 1.5e-19 71.5 0.0 1.9e-19 71.2 0.0 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Peptidase_S9 PF00326.21 gi|212224059|ref|YP_002307295.1| - 2.9e-08 33.5 0.0 0.0011 18.5 0.0 2.6 2 1 0 2 2 2 2 Prolyl oligopeptidase family Thioesterase PF00975.20 gi|212224059|ref|YP_002307295.1| - 0.00013 22.2 0.0 0.0002 21.5 0.0 1.2 1 0 0 1 1 1 1 Thioesterase domain Abhydrolase_2 PF02230.16 gi|212224059|ref|YP_002307295.1| - 0.00017 21.5 0.1 0.0071 16.2 0.0 2.6 2 1 1 3 3 3 1 Phospholipase/Carboxylesterase Abhydrolase_5 PF12695.7 gi|212224059|ref|YP_002307295.1| - 0.00051 19.8 0.0 0.011 15.6 0.0 2.4 2 1 0 2 2 2 1 Alpha/beta hydrolase family Peptidase_S15 PF02129.18 gi|212224059|ref|YP_002307295.1| - 0.0014 18.3 0.0 0.044 13.4 0.0 2.5 1 1 0 1 1 1 1 X-Pro dipeptidyl-peptidase (S15 family) Ser_hydrolase PF06821.13 gi|212224059|ref|YP_002307295.1| - 0.0033 17.3 0.0 0.0054 16.6 0.0 1.5 1 0 0 1 1 1 1 Serine hydrolase Esterase PF00756.20 gi|212224059|ref|YP_002307295.1| - 0.0042 16.8 0.0 0.0052 16.5 0.0 1.4 1 1 0 1 1 1 1 Putative esterase FSH1 PF03959.13 gi|212224059|ref|YP_002307295.1| - 0.028 14.1 0.0 0.074 12.7 0.0 1.7 1 1 0 1 1 1 0 Serine hydrolase (FSH1) DUF1749 PF08538.10 gi|212224059|ref|YP_002307295.1| - 0.029 13.5 0.0 0.042 12.9 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1749) DpaA_N PF16924.5 gi|212224059|ref|YP_002307295.1| - 0.047 13.8 0.0 0.13 12.3 0.0 1.7 2 0 0 2 2 1 0 Dipicolinate synthase subunit A N-terminal domain PGAP1 PF07819.13 gi|212224059|ref|YP_002307295.1| - 0.047 13.4 0.0 0.075 12.7 0.0 1.3 1 0 0 1 1 1 0 PGAP1-like protein DLH PF01738.18 gi|212224059|ref|YP_002307295.1| - 0.055 13.0 0.0 0.55 9.7 0.0 2.0 2 0 0 2 2 2 0 Dienelactone hydrolase family Abhydrolase_4 PF08386.10 gi|212224059|ref|YP_002307295.1| - 0.067 13.3 0.0 0.36 11.0 0.0 2.0 2 0 0 2 2 2 0 TAP-like protein LCAT PF02450.15 gi|212224059|ref|YP_002307295.1| - 0.068 12.3 0.0 0.084 12.0 0.0 1.1 1 0 0 1 1 1 0 Lecithin:cholesterol acyltransferase Palm_thioest PF02089.15 gi|212224059|ref|YP_002307295.1| - 0.11 12.3 0.0 0.16 11.8 0.0 1.2 1 0 0 1 1 1 0 Palmitoyl protein thioesterase Adenylsucc_synt PF00709.21 gi|212224060|ref|YP_002307296.1| - 6.8e-91 305.3 1.3 1.4e-44 152.7 0.0 3.0 1 1 2 3 3 3 3 Adenylosuccinate synthetase CytochromB561_N PF09786.9 gi|212224060|ref|YP_002307296.1| - 0.0015 17.6 0.0 0.0019 17.3 0.0 1.0 1 0 0 1 1 1 1 Cytochrome B561, N terminal AA_kinase PF00696.28 gi|212224060|ref|YP_002307296.1| - 0.0025 17.5 0.0 0.0039 16.8 0.0 1.2 1 0 0 1 1 1 1 Amino acid kinase family Epimerase PF01370.21 gi|212224061|ref|YP_002307297.1| - 1.8e-62 210.9 0.1 2.2e-62 210.7 0.1 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|212224061|ref|YP_002307297.1| - 7.1e-58 196.6 0.0 1.1e-57 195.9 0.0 1.3 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase 3Beta_HSD PF01073.19 gi|212224061|ref|YP_002307297.1| - 5.9e-23 81.3 0.0 8e-23 80.8 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.17 gi|212224061|ref|YP_002307297.1| - 2.4e-18 66.3 0.0 3e-18 65.9 0.0 1.0 1 0 0 1 1 1 1 RmlD substrate binding domain Polysacc_synt_2 PF02719.15 gi|212224061|ref|YP_002307297.1| - 1.4e-16 60.5 1.2 2.9e-15 56.2 1.2 2.3 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.12 gi|212224061|ref|YP_002307297.1| - 1.2e-11 44.3 0.0 4.2e-09 36.0 0.0 2.5 2 1 0 2 2 2 2 Male sterility protein NAD_binding_10 PF13460.6 gi|212224061|ref|YP_002307297.1| - 3.3e-07 30.4 0.0 5.4e-07 29.7 0.0 1.3 1 0 0 1 1 1 1 NAD(P)H-binding Sacchrp_dh_NADP PF03435.18 gi|212224061|ref|YP_002307297.1| - 0.00045 20.5 0.1 0.00084 19.6 0.1 1.4 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain adh_short PF00106.25 gi|212224061|ref|YP_002307297.1| - 0.00073 19.0 0.1 0.0034 16.9 0.1 2.0 1 1 0 1 1 1 1 short chain dehydrogenase NmrA PF05368.13 gi|212224061|ref|YP_002307297.1| - 0.0027 17.3 0.0 0.0058 16.2 0.0 1.5 1 0 0 1 1 1 1 NmrA-like family DAO PF01266.24 gi|212224061|ref|YP_002307297.1| - 0.012 15.2 0.0 0.02 14.5 0.0 1.3 1 0 0 1 1 1 0 FAD dependent oxidoreductase PBECR3 PF18812.1 gi|212224061|ref|YP_002307297.1| - 0.028 14.4 0.2 7.5 6.5 0.0 2.4 2 0 0 2 2 2 0 phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease3 TrkA_N PF02254.18 gi|212224061|ref|YP_002307297.1| - 0.028 14.7 0.1 0.063 13.5 0.1 1.7 1 0 0 1 1 1 0 TrkA-N domain DUF1188 PF06690.11 gi|212224061|ref|YP_002307297.1| - 0.12 11.9 0.0 0.18 11.3 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1188) DUF2341 PF10102.9 gi|212224062|ref|YP_002307298.1| - 1.2e-16 61.1 5.1 9.3e-16 58.2 5.6 2.3 2 0 0 2 2 2 1 Domain of unknown function (DUF2341) Prefoldin PF02996.17 gi|212224063|ref|YP_002307299.1| - 3e-28 98.1 5.5 3.9e-28 97.8 5.5 1.2 1 0 0 1 1 1 1 Prefoldin subunit Prefoldin_2 PF01920.20 gi|212224063|ref|YP_002307299.1| - 0.00018 21.4 12.5 0.0027 17.7 1.2 2.2 2 0 0 2 2 2 2 Prefoldin subunit PriC PF07445.12 gi|212224063|ref|YP_002307299.1| - 0.0016 18.4 2.9 0.0025 17.7 2.9 1.3 1 1 0 1 1 1 1 Primosomal replication protein priC ERM PF00769.19 gi|212224063|ref|YP_002307299.1| - 0.0023 17.8 4.2 0.0023 17.8 4.2 2.0 2 0 0 2 2 2 1 Ezrin/radixin/moesin family DUF16 PF01519.16 gi|212224063|ref|YP_002307299.1| - 0.0024 18.4 0.1 0.0024 18.4 0.1 2.1 2 1 0 2 2 2 1 Protein of unknown function DUF16 Rab5-bind PF09311.11 gi|212224063|ref|YP_002307299.1| - 0.0044 16.4 2.0 0.0044 16.4 2.0 2.0 1 1 1 2 2 2 1 Rabaptin-like protein DUF1664 PF07889.12 gi|212224063|ref|YP_002307299.1| - 0.0047 17.0 1.5 0.018 15.0 0.1 2.0 2 0 0 2 2 2 1 Protein of unknown function (DUF1664) Gp-FAR-1 PF05823.12 gi|212224063|ref|YP_002307299.1| - 0.0059 17.0 0.9 0.018 15.4 0.1 1.9 1 1 1 2 2 2 1 Nematode fatty acid retinoid binding protein (Gp-FAR-1) SlyX PF04102.12 gi|212224063|ref|YP_002307299.1| - 0.012 16.2 2.4 0.012 16.2 2.4 2.3 2 0 0 2 2 2 0 SlyX FmiP_Thoc5 PF09766.9 gi|212224063|ref|YP_002307299.1| - 0.021 14.1 1.7 0.021 14.1 1.7 1.9 2 0 0 2 2 2 0 Fms-interacting protein/Thoc5 Prefoldin_3 PF13758.6 gi|212224063|ref|YP_002307299.1| - 0.022 14.8 0.2 0.063 13.3 0.0 1.8 1 1 1 2 2 2 0 Prefoldin subunit OmpH PF03938.14 gi|212224063|ref|YP_002307299.1| - 0.023 15.0 2.2 0.023 15.0 2.2 2.2 2 0 0 2 2 2 0 Outer membrane protein (OmpH-like) Fib_alpha PF08702.10 gi|212224063|ref|YP_002307299.1| - 0.035 14.3 3.7 0.044 14.0 2.2 1.9 1 1 0 1 1 1 0 Fibrinogen alpha/beta chain family KLRAQ PF10205.9 gi|212224063|ref|YP_002307299.1| - 0.045 14.0 9.9 0.13 12.5 0.6 2.4 2 1 0 2 2 2 0 Predicted coiled-coil domain-containing protein Sec2p PF06428.11 gi|212224063|ref|YP_002307299.1| - 0.049 13.6 1.3 0.049 13.6 1.3 2.4 2 1 0 2 2 2 0 GDP/GTP exchange factor Sec2p DUF4337 PF14235.6 gi|212224063|ref|YP_002307299.1| - 0.059 13.5 0.9 0.059 13.5 0.9 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4337) KxDL PF10241.9 gi|212224063|ref|YP_002307299.1| - 0.13 12.6 0.3 0.13 12.6 0.3 2.3 2 1 0 2 2 2 0 Uncharacterized conserved protein Noelin-1 PF12308.8 gi|212224063|ref|YP_002307299.1| - 0.13 12.2 3.4 1.8 8.6 0.2 2.1 2 0 0 2 2 2 0 Neurogenesis glycoprotein Glutaredoxin2_C PF04399.13 gi|212224063|ref|YP_002307299.1| - 0.15 11.9 0.2 0.15 11.9 0.2 2.0 2 0 0 2 2 2 0 Glutaredoxin 2, C terminal domain DUF4795 PF16043.5 gi|212224063|ref|YP_002307299.1| - 0.2 11.3 6.1 0.1 12.2 0.7 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4795) Spc7 PF08317.11 gi|212224063|ref|YP_002307299.1| - 0.2 10.5 13.2 0.059 12.2 1.6 2.0 2 0 0 2 2 2 0 Spc7 kinetochore protein TPR_2 PF07719.17 gi|212224063|ref|YP_002307299.1| - 0.21 11.8 0.4 0.21 11.8 0.4 2.5 3 0 0 3 3 1 0 Tetratricopeptide repeat L31 PF09784.9 gi|212224063|ref|YP_002307299.1| - 0.23 11.9 0.8 0.46 10.9 0.2 1.7 2 0 0 2 2 2 0 Mitochondrial ribosomal protein L31 COG2 PF06148.11 gi|212224063|ref|YP_002307299.1| - 0.24 11.5 4.7 0.24 11.5 0.3 2.2 2 1 0 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 ADIP PF11559.8 gi|212224063|ref|YP_002307299.1| - 0.24 11.5 11.9 0.2 11.8 1.0 2.1 2 0 0 2 2 2 0 Afadin- and alpha -actinin-Binding NPV_P10 PF05531.12 gi|212224063|ref|YP_002307299.1| - 0.27 11.7 4.1 2.1 8.8 0.5 2.2 2 0 0 2 2 2 0 Nucleopolyhedrovirus P10 protein FlaC_arch PF05377.11 gi|212224063|ref|YP_002307299.1| - 0.3 11.5 4.2 1.4 9.3 0.4 2.7 2 1 1 3 3 3 0 Flagella accessory protein C (FlaC) HAUS-augmin3 PF14932.6 gi|212224063|ref|YP_002307299.1| - 0.31 10.6 14.1 0.88 9.1 0.7 2.0 2 0 0 2 2 2 0 HAUS augmin-like complex subunit 3 Laminin_II PF06009.12 gi|212224063|ref|YP_002307299.1| - 0.44 10.6 5.4 0.55 10.2 0.3 2.1 2 0 0 2 2 2 0 Laminin Domain II YabA PF06156.13 gi|212224063|ref|YP_002307299.1| - 0.57 10.9 6.4 0.54 10.9 0.2 2.2 2 0 0 2 2 2 0 Initiation control protein YabA YlqD PF11068.8 gi|212224063|ref|YP_002307299.1| - 0.98 9.8 10.6 1.3 9.4 3.3 2.2 2 0 0 2 2 2 0 YlqD protein BST2 PF16716.5 gi|212224063|ref|YP_002307299.1| - 1.4 9.5 11.2 0.42 11.2 1.6 2.3 2 0 0 2 2 2 0 Bone marrow stromal antigen 2 Spc24 PF08286.11 gi|212224063|ref|YP_002307299.1| - 1.4 9.2 8.9 0.52 10.6 0.6 2.5 2 1 0 2 2 2 0 Spc24 subunit of Ndc80 PEP-utilisers_N PF05524.13 gi|212224063|ref|YP_002307299.1| - 3.8 7.7 9.5 0.64 10.2 2.6 2.5 1 1 1 2 2 2 0 PEP-utilising enzyme, N-terminal Jnk-SapK_ap_N PF09744.9 gi|212224063|ref|YP_002307299.1| - 4 7.7 15.3 2.7 8.2 1.0 2.1 2 0 0 2 2 2 0 JNK_SAPK-associated protein-1 Tektin PF03148.14 gi|212224063|ref|YP_002307299.1| - 4.5 5.9 11.6 0.053 12.3 1.7 2.1 2 1 0 2 2 2 0 Tektin family Med4 PF10018.9 gi|212224063|ref|YP_002307299.1| - 6.3 6.4 10.1 0.11 12.2 1.0 2.2 2 1 0 2 2 2 0 Vitamin-D-receptor interacting Mediator subunit 4 Synaptobrevin PF00957.21 gi|212224063|ref|YP_002307299.1| - 7.2 6.5 6.9 3.5 7.5 0.2 2.6 3 0 0 3 3 3 0 Synaptobrevin TMF_DNA_bd PF12329.8 gi|212224063|ref|YP_002307299.1| - 7.2 6.7 16.0 0.16 12.0 3.5 2.6 2 1 0 2 2 2 0 TATA element modulatory factor 1 DNA binding UPF0242 PF06785.11 gi|212224063|ref|YP_002307299.1| - 7.7 6.6 14.4 40 4.3 10.2 2.1 1 1 1 2 2 2 0 Uncharacterised protein family (UPF0242) N-terminus ZapB PF06005.12 gi|212224063|ref|YP_002307299.1| - 9.4 6.8 18.4 0.64 10.5 2.7 2.4 2 0 0 2 2 2 0 Cell division protein ZapB CbiA PF01656.23 gi|212224064|ref|YP_002307300.1| - 1.8e-22 79.8 0.0 2.4e-22 79.3 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.9 gi|212224064|ref|YP_002307300.1| - 1.5e-17 63.9 0.1 3.2e-09 36.6 0.0 3.0 2 1 0 2 2 2 2 NUBPL iron-transfer P-loop NTPase Fer4_21 PF14697.6 gi|212224064|ref|YP_002307300.1| - 1.2e-10 41.3 14.7 1.5e-10 41.0 13.5 1.8 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|212224064|ref|YP_002307300.1| - 3.6e-09 36.0 17.9 2.1e-06 27.3 5.9 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|212224064|ref|YP_002307300.1| - 6.4e-08 32.2 12.4 5.3e-05 23.1 2.4 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_NifH PF00142.18 gi|212224064|ref|YP_002307300.1| - 1.5e-06 27.9 0.0 0.011 15.2 0.0 2.4 2 1 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family CBP_BcsQ PF06564.12 gi|212224064|ref|YP_002307300.1| - 6.5e-06 25.8 0.0 0.0031 17.0 0.0 2.1 2 0 0 2 2 2 2 Cellulose biosynthesis protein BcsQ Fer4_10 PF13237.6 gi|212224064|ref|YP_002307300.1| - 9.4e-06 25.7 14.1 0.0059 16.7 5.1 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain AAA_31 PF13614.6 gi|212224064|ref|YP_002307300.1| - 1.1e-05 25.4 0.0 0.00019 21.4 0.0 2.1 1 1 0 1 1 1 1 AAA domain Fer4_17 PF13534.6 gi|212224064|ref|YP_002307300.1| - 2.5e-05 24.7 4.5 0.0053 17.3 1.2 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|212224064|ref|YP_002307300.1| - 4e-05 24.1 14.1 0.00036 21.0 14.6 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain ArsA_ATPase PF02374.15 gi|212224064|ref|YP_002307300.1| - 0.00042 19.6 0.0 0.00079 18.7 0.0 1.5 1 0 0 1 1 1 1 Anion-transporting ATPase AAA_26 PF13500.6 gi|212224064|ref|YP_002307300.1| - 0.00044 20.1 0.1 0.49 10.2 0.0 2.6 2 1 1 3 3 3 2 AAA domain Fer4_16 PF13484.6 gi|212224064|ref|YP_002307300.1| - 0.00049 21.0 11.2 0.096 13.6 0.4 2.6 1 1 1 3 3 3 3 4Fe-4S double cluster binding domain Fer4_9 PF13187.6 gi|212224064|ref|YP_002307300.1| - 0.00065 19.8 13.2 0.0017 18.5 13.3 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|212224064|ref|YP_002307300.1| - 0.0056 16.7 16.8 0.1 12.7 6.6 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.6 gi|212224064|ref|YP_002307300.1| - 0.099 13.1 14.9 0.2 12.1 4.8 2.3 1 1 3 4 4 4 0 4Fe-4S dicluster domain AAA_5 PF07728.14 gi|212224064|ref|YP_002307300.1| - 0.11 12.4 0.0 0.2 11.7 0.0 1.3 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_16 PF13191.6 gi|212224064|ref|YP_002307300.1| - 0.18 12.2 0.0 0.42 11.0 0.0 1.6 1 0 0 1 1 1 0 AAA ATPase domain Fer4_15 PF13459.6 gi|212224064|ref|YP_002307300.1| - 1.8 9.4 8.7 8.2 7.2 0.3 2.7 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_4 PF12800.7 gi|212224064|ref|YP_002307300.1| - 1.8 9.3 13.0 8.4 7.2 1.3 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_13 PF13370.6 gi|212224064|ref|YP_002307300.1| - 2.8 8.6 13.9 2.6 8.6 4.7 2.6 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_22 PF17179.4 gi|212224064|ref|YP_002307300.1| - 8.3 7.3 13.4 17 6.3 3.9 2.4 1 1 1 3 3 3 0 4Fe-4S dicluster domain CbiA PF01656.23 gi|212224065|ref|YP_002307301.1| - 3e-20 72.6 0.0 4.4e-20 72.0 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.9 gi|212224065|ref|YP_002307301.1| - 2.4e-15 56.6 0.6 1.1e-08 34.8 0.0 3.2 2 2 0 2 2 2 2 NUBPL iron-transfer P-loop NTPase Fer4_6 PF12837.7 gi|212224065|ref|YP_002307301.1| - 9e-11 41.4 13.4 1.1e-06 28.4 1.9 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4 PF00037.27 gi|212224065|ref|YP_002307301.1| - 1.5e-09 37.2 12.6 7.6e-06 25.5 1.4 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|212224065|ref|YP_002307301.1| - 8e-09 35.5 7.8 1.3e-08 34.8 7.8 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_NifH PF00142.18 gi|212224065|ref|YP_002307301.1| - 4.1e-06 26.4 0.0 0.022 14.2 0.0 2.2 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family Fer4_9 PF13187.6 gi|212224065|ref|YP_002307301.1| - 1.1e-05 25.4 11.3 3.4e-05 23.9 11.8 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|212224065|ref|YP_002307301.1| - 1.7e-05 25.0 10.0 0.013 16.0 1.0 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|212224065|ref|YP_002307301.1| - 2.5e-05 24.1 12.3 0.0023 17.9 1.8 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|212224065|ref|YP_002307301.1| - 3.9e-05 24.2 14.2 0.0009 19.8 15.8 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|212224065|ref|YP_002307301.1| - 4.8e-05 23.7 5.5 0.025 15.0 0.2 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain AAA_31 PF13614.6 gi|212224065|ref|YP_002307301.1| - 0.00015 21.8 0.0 0.00051 20.0 0.0 1.8 2 0 0 2 2 2 1 AAA domain CBP_BcsQ PF06564.12 gi|212224065|ref|YP_002307301.1| - 0.0002 20.9 0.0 0.016 14.7 0.0 2.1 2 0 0 2 2 2 1 Cellulose biosynthesis protein BcsQ MipZ PF09140.11 gi|212224065|ref|YP_002307301.1| - 0.00049 19.5 0.0 0.00081 18.8 0.0 1.4 1 0 0 1 1 1 1 ATPase MipZ Fer4_10 PF13237.6 gi|212224065|ref|YP_002307301.1| - 0.00069 19.7 14.7 0.026 14.6 15.5 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain ArsA_ATPase PF02374.15 gi|212224065|ref|YP_002307301.1| - 0.0022 17.2 0.5 0.056 12.6 0.1 2.3 2 1 0 2 2 2 1 Anion-transporting ATPase Shikimate_DH PF01488.20 gi|212224065|ref|YP_002307301.1| - 0.017 15.2 0.2 0.35 10.9 0.1 2.2 1 1 1 2 2 2 0 Shikimate / quinate 5-dehydrogenase Fer4_16 PF13484.6 gi|212224065|ref|YP_002307301.1| - 0.026 15.4 15.9 0.19 12.7 4.0 2.3 1 1 2 3 3 3 0 4Fe-4S double cluster binding domain SRP54 PF00448.22 gi|212224065|ref|YP_002307301.1| - 0.031 13.9 0.1 0.72 9.4 0.0 2.2 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain Fer4_17 PF13534.6 gi|212224065|ref|YP_002307301.1| - 0.06 13.9 15.7 0.88 10.2 4.9 2.3 1 1 1 2 2 2 0 4Fe-4S dicluster domain AAA_25 PF13481.6 gi|212224065|ref|YP_002307301.1| - 0.063 12.9 0.0 0.11 12.1 0.0 1.6 1 0 0 1 1 1 0 AAA domain Fer4_3 PF12798.7 gi|212224065|ref|YP_002307301.1| - 0.085 13.8 20.2 0.97 10.5 5.4 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain PhoH PF02562.16 gi|212224065|ref|YP_002307301.1| - 0.13 11.6 0.1 0.63 9.5 0.0 1.9 2 0 0 2 2 2 0 PhoH-like protein Fer4_22 PF17179.4 gi|212224065|ref|YP_002307301.1| - 0.24 12.2 6.8 2.5 9.0 0.3 2.3 2 0 0 2 2 2 0 4Fe-4S dicluster domain Nitro_FeMo-Co PF02579.17 gi|212224066|ref|YP_002307302.1| - 7.8e-15 55.0 0.0 9.4e-15 54.7 0.0 1.1 1 0 0 1 1 1 1 Dinitrogenase iron-molybdenum cofactor DUF2250 PF10007.9 gi|212224067|ref|YP_002307303.1| - 4.1e-33 113.4 1.1 5.6e-33 112.9 1.1 1.2 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) TrmB PF01978.19 gi|212224067|ref|YP_002307303.1| - 0.0024 17.7 0.1 0.0048 16.7 0.1 1.6 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB DUF4423 PF14394.6 gi|212224067|ref|YP_002307303.1| - 0.03 14.0 0.1 0.046 13.4 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) MarR_2 PF12802.7 gi|212224067|ref|YP_002307303.1| - 0.066 13.1 0.0 0.099 12.5 0.0 1.3 1 0 0 1 1 1 0 MarR family Nitro_FeMo-Co PF02579.17 gi|212224068|ref|YP_002307304.1| - 8.9e-22 77.2 0.2 1.1e-21 76.9 0.2 1.1 1 0 0 1 1 1 1 Dinitrogenase iron-molybdenum cofactor FAM153 PF15722.5 gi|212224068|ref|YP_002307304.1| - 0.024 15.0 0.2 0.038 14.3 0.2 1.2 1 0 0 1 1 1 0 FAM153 family Nitro_FeMo-Co PF02579.17 gi|212224070|ref|YP_002307306.1| - 4.7e-22 78.1 0.1 6e-22 77.8 0.1 1.1 1 0 0 1 1 1 1 Dinitrogenase iron-molybdenum cofactor adh_short PF00106.25 gi|212224071|ref|YP_002307307.1| - 0.04 13.4 0.3 0.042 13.3 0.3 1.0 1 0 0 1 1 1 0 short chain dehydrogenase adh_short_C2 PF13561.6 gi|212224072|ref|YP_002307308.1| - 2.8e-38 131.8 0.0 3.9e-38 131.3 0.0 1.2 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|212224072|ref|YP_002307308.1| - 8.7e-22 77.5 0.0 1.1e-21 77.3 0.0 1.1 1 0 0 1 1 1 1 short chain dehydrogenase DUF1776 PF08643.10 gi|212224072|ref|YP_002307308.1| - 0.0019 17.6 0.0 0.0026 17.2 0.0 1.1 1 0 0 1 1 1 1 Fungal family of unknown function (DUF1776) NAD_binding_10 PF13460.6 gi|212224072|ref|YP_002307308.1| - 0.029 14.3 0.0 0.037 13.9 0.0 1.2 1 0 0 1 1 1 0 NAD(P)H-binding DUF998 PF06197.13 gi|212224073|ref|YP_002307309.1| - 5.6e-25 88.0 23.4 6.5e-25 87.8 23.4 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF998) Phage_holin_2_4 PF16082.5 gi|212224073|ref|YP_002307309.1| - 0.33 10.7 0.2 0.33 10.7 0.2 3.1 2 1 0 3 3 3 0 Bacteriophage holin family, superfamily II-like DUF296 PF03479.15 gi|212224074|ref|YP_002307310.1| - 1e-21 77.3 0.0 1.1e-21 77.2 0.0 1.0 1 0 0 1 1 1 1 Plants and Prokaryotes Conserved (PCC) domain PTPS PF01242.19 gi|212224076|ref|YP_002307312.1| - 2.7e-27 95.2 0.1 3.2e-27 94.9 0.1 1.1 1 0 0 1 1 1 1 6-pyruvoyl tetrahydropterin synthase DUF134 PF02001.16 gi|212224077|ref|YP_002307313.1| - 4.1e-25 88.2 0.0 5e-25 87.9 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF134 Sigma70_r4_2 PF08281.12 gi|212224077|ref|YP_002307313.1| - 8.2e-09 35.0 0.0 1.4e-08 34.2 0.0 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_r4 PF04545.16 gi|212224077|ref|YP_002307313.1| - 1.1e-08 34.5 0.1 1.6e-08 34.0 0.1 1.3 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_23 PF13384.6 gi|212224077|ref|YP_002307313.1| - 4.7e-06 26.2 0.0 8.5e-06 25.4 0.0 1.4 1 0 0 1 1 1 1 Homeodomain-like domain Sigma70_ECF PF07638.11 gi|212224077|ref|YP_002307313.1| - 2e-05 24.6 0.3 2.5e-05 24.3 0.3 1.1 1 0 0 1 1 1 1 ECF sigma factor HTH_31 PF13560.6 gi|212224077|ref|YP_002307313.1| - 0.0027 18.0 0.0 0.0029 17.9 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_1 PF00126.27 gi|212224077|ref|YP_002307313.1| - 0.0059 16.5 0.1 0.0082 16.1 0.1 1.2 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family HTH_3 PF01381.22 gi|212224077|ref|YP_002307313.1| - 0.012 15.7 0.0 0.023 14.7 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix HTH_24 PF13412.6 gi|212224077|ref|YP_002307313.1| - 0.012 15.1 0.0 0.019 14.5 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_38 PF13936.6 gi|212224077|ref|YP_002307313.1| - 0.017 14.9 0.0 0.033 14.0 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_11 PF08279.12 gi|212224077|ref|YP_002307313.1| - 0.022 14.7 0.0 0.033 14.1 0.0 1.3 1 0 0 1 1 1 0 HTH domain HTH_Crp_2 PF13545.6 gi|212224077|ref|YP_002307313.1| - 0.023 14.6 0.0 0.034 14.1 0.0 1.3 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_28 PF13518.6 gi|212224077|ref|YP_002307313.1| - 0.049 13.8 0.0 0.099 12.8 0.0 1.6 1 1 0 1 1 1 0 Helix-turn-helix domain HTH_10 PF04967.12 gi|212224077|ref|YP_002307313.1| - 0.05 13.4 0.0 0.082 12.7 0.0 1.4 1 0 0 1 1 1 0 HTH DNA binding domain MarR_2 PF12802.7 gi|212224077|ref|YP_002307313.1| - 0.13 12.2 0.0 0.23 11.4 0.0 1.3 1 0 0 1 1 1 0 MarR family HTH_29 PF13551.6 gi|212224077|ref|YP_002307313.1| - 0.2 11.7 0.1 0.2 11.7 0.1 1.9 2 0 0 2 2 2 0 Winged helix-turn helix Lyase_1 PF00206.20 gi|212224078|ref|YP_002307314.1| - 2.6e-58 197.9 0.2 3.9e-58 197.3 0.2 1.2 1 0 0 1 1 1 1 Lyase ADSL_C PF10397.9 gi|212224078|ref|YP_002307314.1| - 3.7e-18 65.9 0.4 2.1e-17 63.4 0.1 2.3 2 0 0 2 2 2 1 Adenylosuccinate lyase C-terminus ASL_C PF08328.11 gi|212224078|ref|YP_002307314.1| - 7.2e-08 32.5 0.1 2e-07 31.1 0.1 1.8 1 0 0 1 1 1 1 Adenylosuccinate lyase C-terminal RII_binding_1 PF10522.9 gi|212224078|ref|YP_002307314.1| - 0.2 12.0 1.4 27 5.3 0.1 3.0 2 0 0 2 2 2 0 RII binding domain Alba PF01918.21 gi|212224079|ref|YP_002307315.1| - 6.5e-22 77.1 1.1 8e-22 76.8 1.1 1.1 1 0 0 1 1 1 1 Alba Rpp20 PF12328.8 gi|212224079|ref|YP_002307315.1| - 0.00081 19.4 0.1 0.00083 19.3 0.1 1.3 1 0 0 1 1 1 1 Rpp20 subunit of nuclear RNase MRP and P HTH_20 PF12840.7 gi|212224080|ref|YP_002307316.1| - 1.1e-11 44.6 0.0 1.9e-11 43.9 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|212224080|ref|YP_002307316.1| - 1.6e-09 37.5 0.3 2.5e-09 36.8 0.3 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.6 gi|212224080|ref|YP_002307316.1| - 2.8e-08 33.2 0.1 5e-08 32.4 0.1 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|212224080|ref|YP_002307316.1| - 5.4e-08 32.6 0.0 1.5e-07 31.2 0.0 1.8 1 1 0 1 1 1 1 MarR family HTH_IclR PF09339.10 gi|212224080|ref|YP_002307316.1| - 7.1e-06 25.7 0.0 1.4e-05 24.8 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain TrmB PF01978.19 gi|212224080|ref|YP_002307316.1| - 1.8e-05 24.5 0.1 4e-05 23.4 0.1 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.22 gi|212224080|ref|YP_002307316.1| - 2.2e-05 24.3 0.1 4.5e-05 23.3 0.1 1.5 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.6 gi|212224080|ref|YP_002307316.1| - 9.5e-05 22.8 0.1 0.00019 21.8 0.1 1.6 1 0 0 1 1 1 1 Winged helix DNA-binding domain Fe_dep_repress PF01325.19 gi|212224080|ref|YP_002307316.1| - 0.00027 21.1 0.1 0.00062 19.9 0.1 1.5 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain DUF742 PF05331.11 gi|212224080|ref|YP_002307316.1| - 0.00071 19.4 0.0 0.0014 18.4 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF742) GerE PF00196.19 gi|212224080|ref|YP_002307316.1| - 0.0014 18.1 0.0 0.0063 16.0 0.0 2.1 2 0 0 2 2 2 1 Bacterial regulatory proteins, luxR family HTH_23 PF13384.6 gi|212224080|ref|YP_002307316.1| - 0.0022 17.8 0.0 0.0049 16.6 0.0 1.6 1 0 0 1 1 1 1 Homeodomain-like domain HTH_38 PF13936.6 gi|212224080|ref|YP_002307316.1| - 0.0034 17.1 0.0 0.0067 16.2 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain Sigma70_r4 PF04545.16 gi|212224080|ref|YP_002307316.1| - 0.0055 16.2 0.0 0.011 15.3 0.0 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 CENP-B_N PF04218.13 gi|212224080|ref|YP_002307316.1| - 0.0065 16.1 0.1 0.025 14.2 0.0 2.0 2 0 0 2 2 2 1 CENP-B N-terminal DNA-binding domain Sigma70_r4_2 PF08281.12 gi|212224080|ref|YP_002307316.1| - 0.0071 16.0 0.1 0.02 14.6 0.0 1.8 1 1 1 2 2 2 1 Sigma-70, region 4 HTH_AsnC-type PF13404.6 gi|212224080|ref|YP_002307316.1| - 0.0076 16.1 0.0 0.013 15.3 0.0 1.5 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_28 PF13518.6 gi|212224080|ref|YP_002307316.1| - 0.0082 16.3 0.0 0.034 14.3 0.0 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_45 PF14947.6 gi|212224080|ref|YP_002307316.1| - 0.0097 15.9 0.0 0.023 14.7 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_Tnp_ISL3 PF13542.6 gi|212224080|ref|YP_002307316.1| - 0.017 14.5 0.0 0.031 13.7 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 HTH_11 PF08279.12 gi|212224080|ref|YP_002307316.1| - 0.018 15.0 0.3 0.042 13.8 0.0 1.8 2 0 0 2 2 2 0 HTH domain HTH_40 PF14493.6 gi|212224080|ref|YP_002307316.1| - 0.02 15.4 0.0 0.036 14.5 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain Rrf2 PF02082.20 gi|212224080|ref|YP_002307316.1| - 0.031 14.6 0.1 0.09 13.1 0.1 1.7 2 0 0 2 2 1 0 Transcriptional regulator UPF0122 PF04297.14 gi|212224080|ref|YP_002307316.1| - 0.051 13.8 0.1 0.084 13.1 0.1 1.3 1 0 0 1 1 1 0 Putative helix-turn-helix protein, YlxM / p13 like DprA_WH PF17782.1 gi|212224080|ref|YP_002307316.1| - 0.11 12.6 0.0 0.18 11.9 0.0 1.4 1 0 0 1 1 1 0 DprA winged helix domain CBS PF00571.28 gi|212224081|ref|YP_002307317.1| - 1.5e-23 83.0 8.5 2.8e-11 43.7 3.5 2.1 2 0 0 2 2 2 2 CBS domain zf-Sec23_Sec24 PF04810.15 gi|212224081|ref|YP_002307317.1| - 0.004 17.2 0.1 0.008 16.2 0.1 1.5 1 0 0 1 1 1 1 Sec23/Sec24 zinc finger Rubredoxin_2 PF18073.1 gi|212224081|ref|YP_002307317.1| - 0.022 14.4 0.6 0.64 9.8 0.0 2.1 2 0 0 2 2 2 0 Rubredoxin metal binding domain RNA_pol_Rpb2_2 PF04561.14 gi|212224081|ref|YP_002307317.1| - 0.042 13.5 0.0 0.056 13.1 0.0 1.3 1 0 0 1 1 1 0 RNA polymerase Rpb2, domain 2 DUF1788 PF08747.11 gi|212224081|ref|YP_002307317.1| - 0.045 13.8 0.0 0.071 13.1 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1788) DUF2318 PF10080.9 gi|212224081|ref|YP_002307317.1| - 0.1 12.7 0.2 0.25 11.5 0.2 1.7 1 0 0 1 1 1 0 Predicted membrane protein (DUF2318) NTPase_1 PF03266.15 gi|212224082|ref|YP_002307318.1| - 7.5e-56 188.6 0.2 8.6e-56 188.4 0.2 1.0 1 0 0 1 1 1 1 NTPase DUF2478 PF10649.9 gi|212224082|ref|YP_002307318.1| - 9.6e-09 35.0 0.1 2.3e-08 33.8 0.1 1.6 1 1 0 1 1 1 1 Protein of unknown function (DUF2478) AAA_16 PF13191.6 gi|212224082|ref|YP_002307318.1| - 3.3e-05 24.3 0.1 4.9e-05 23.8 0.1 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_18 PF13238.6 gi|212224082|ref|YP_002307318.1| - 6.3e-05 23.5 0.0 0.00025 21.6 0.0 2.0 1 1 1 2 2 2 1 AAA domain AAA PF00004.29 gi|212224082|ref|YP_002307318.1| - 7.4e-05 23.2 0.0 0.00013 22.4 0.0 1.5 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|212224082|ref|YP_002307318.1| - 9.6e-05 22.7 0.3 0.00044 20.5 0.3 2.0 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|212224082|ref|YP_002307318.1| - 0.00021 21.1 0.5 0.00057 19.7 0.5 1.7 1 1 0 1 1 1 1 AAA domain AAA_24 PF13479.6 gi|212224082|ref|YP_002307318.1| - 0.00029 20.6 0.0 0.00066 19.5 0.0 1.7 1 1 0 1 1 1 1 AAA domain NACHT PF05729.12 gi|212224082|ref|YP_002307318.1| - 0.00054 19.9 0.0 0.00092 19.2 0.0 1.3 1 0 0 1 1 1 1 NACHT domain RuvB_N PF05496.12 gi|212224082|ref|YP_002307318.1| - 0.0014 18.4 0.2 0.18 11.6 0.0 2.2 2 0 0 2 2 2 1 Holliday junction DNA helicase RuvB P-loop domain AAA_5 PF07728.14 gi|212224082|ref|YP_002307318.1| - 0.0014 18.6 0.6 0.012 15.6 0.6 2.3 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) ATPase PF06745.13 gi|212224082|ref|YP_002307318.1| - 0.0023 17.3 0.0 0.0034 16.7 0.0 1.2 1 0 0 1 1 1 1 KaiC ATPase_2 PF01637.18 gi|212224082|ref|YP_002307318.1| - 0.0024 17.8 0.0 0.0091 15.9 0.0 1.8 2 0 0 2 2 2 1 ATPase domain predominantly from Archaea AAA_28 PF13521.6 gi|212224082|ref|YP_002307318.1| - 0.0044 17.3 0.1 0.0073 16.6 0.1 1.4 1 0 0 1 1 1 1 AAA domain NB-ARC PF00931.22 gi|212224082|ref|YP_002307318.1| - 0.0057 15.9 0.0 0.0092 15.2 0.0 1.3 1 0 0 1 1 1 1 NB-ARC domain cobW PF02492.19 gi|212224082|ref|YP_002307318.1| - 0.0057 16.3 0.1 0.02 14.5 0.0 1.7 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain AAA_17 PF13207.6 gi|212224082|ref|YP_002307318.1| - 0.0075 16.7 0.1 0.013 15.9 0.1 1.4 1 1 0 1 1 1 1 AAA domain AAA_14 PF13173.6 gi|212224082|ref|YP_002307318.1| - 0.014 15.4 0.2 0.092 12.8 0.2 2.3 1 1 0 1 1 1 0 AAA domain AAA_33 PF13671.6 gi|212224082|ref|YP_002307318.1| - 0.015 15.5 0.0 0.021 15.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_19 PF13245.6 gi|212224082|ref|YP_002307318.1| - 0.016 15.5 0.7 0.14 12.4 0.7 2.2 1 1 0 1 1 1 0 AAA domain IstB_IS21 PF01695.17 gi|212224082|ref|YP_002307318.1| - 0.022 14.5 0.1 1.6 8.4 0.0 2.2 2 0 0 2 2 2 0 IstB-like ATP binding protein MeaB PF03308.16 gi|212224082|ref|YP_002307318.1| - 0.029 13.3 0.1 0.053 12.5 0.1 1.5 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB RNA_helicase PF00910.22 gi|212224082|ref|YP_002307318.1| - 0.032 14.6 0.0 0.087 13.2 0.0 1.7 2 0 0 2 2 1 0 RNA helicase MobB PF03205.14 gi|212224082|ref|YP_002307318.1| - 0.039 13.8 0.0 0.072 13.0 0.0 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B ATP_bind_1 PF03029.17 gi|212224082|ref|YP_002307318.1| - 0.04 13.7 0.0 0.065 13.0 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein AAA_7 PF12775.7 gi|212224082|ref|YP_002307318.1| - 0.045 13.3 0.0 0.12 11.9 0.0 1.6 2 0 0 2 2 2 0 P-loop containing dynein motor region APS_kinase PF01583.20 gi|212224082|ref|YP_002307318.1| - 0.062 13.2 0.0 0.12 12.2 0.0 1.5 1 0 0 1 1 1 0 Adenylylsulphate kinase ABC_tran PF00005.27 gi|212224082|ref|YP_002307318.1| - 0.063 13.8 0.6 0.076 13.5 0.0 1.5 2 0 0 2 2 1 0 ABC transporter Rad17 PF03215.15 gi|212224082|ref|YP_002307318.1| - 0.071 13.0 0.0 1.4 8.8 0.0 2.1 2 0 0 2 2 2 0 Rad17 P-loop domain RsgA_GTPase PF03193.16 gi|212224082|ref|YP_002307318.1| - 0.078 12.9 0.0 0.12 12.3 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase SRP54 PF00448.22 gi|212224082|ref|YP_002307318.1| - 0.093 12.3 0.0 0.16 11.5 0.0 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_29 PF13555.6 gi|212224082|ref|YP_002307318.1| - 0.1 12.4 0.0 0.22 11.3 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain PhoH PF02562.16 gi|212224082|ref|YP_002307318.1| - 0.14 11.6 0.2 0.26 10.7 0.2 1.4 1 0 0 1 1 1 0 PhoH-like protein DUF3640 PF12342.8 gi|212224082|ref|YP_002307318.1| - 0.18 11.6 1.1 0.33 10.7 0.2 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF3640) AAA_25 PF13481.6 gi|212224082|ref|YP_002307318.1| - 0.18 11.3 1.3 0.43 10.1 0.6 2.1 2 1 0 2 2 2 0 AAA domain Roc PF08477.13 gi|212224082|ref|YP_002307318.1| - 0.2 11.9 0.0 0.32 11.2 0.0 1.4 1 0 0 1 1 1 0 Ras of Complex, Roc, domain of DAPkinase IF-2B PF01008.17 gi|212224083|ref|YP_002307319.1| - 6.1e-83 278.3 0.0 7.3e-83 278.0 0.0 1.0 1 0 0 1 1 1 1 Initiation factor 2 subunit family Fe-ADH PF00465.19 gi|212224085|ref|YP_002307321.1| - 3.6e-96 322.2 0.0 4e-96 322.0 0.0 1.0 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH_2 PF13685.6 gi|212224085|ref|YP_002307321.1| - 8.7e-13 48.6 0.1 2.1e-06 27.6 0.0 2.1 2 0 0 2 2 2 2 Iron-containing alcohol dehydrogenase IF2_N PF04760.15 gi|212224085|ref|YP_002307321.1| - 0.054 13.3 0.1 0.14 12.0 0.1 1.7 1 0 0 1 1 1 0 Translation initiation factor IF-2, N-terminal region DEAD PF00270.29 gi|212224086|ref|YP_002307322.1| - 6.5e-30 104.2 0.0 7.6e-28 97.4 0.0 2.3 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|212224086|ref|YP_002307322.1| - 7.3e-21 74.6 0.0 1.1e-19 70.8 0.0 2.6 3 0 0 3 3 3 1 Helicase conserved C-terminal domain DEAD_assoc PF08494.11 gi|212224086|ref|YP_002307322.1| - 3.9e-19 69.2 2.1 2e-17 63.6 1.2 3.5 2 2 0 2 2 2 1 DEAD/H associated ResIII PF04851.15 gi|212224086|ref|YP_002307322.1| - 1.6e-08 34.8 0.0 3e-08 33.9 0.0 1.4 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit AAA_19 PF13245.6 gi|212224086|ref|YP_002307322.1| - 0.00029 21.2 0.1 0.0058 17.0 0.0 2.4 2 0 0 2 2 2 1 AAA domain AAA_30 PF13604.6 gi|212224086|ref|YP_002307322.1| - 0.0028 17.4 0.0 0.0068 16.1 0.0 1.7 1 0 0 1 1 1 1 AAA domain zinc_ribbon_10 PF10058.9 gi|212224086|ref|YP_002307322.1| - 0.011 15.4 1.3 0.024 14.4 0.3 2.0 2 0 0 2 2 2 0 Predicted integral membrane zinc-ribbon metal-binding protein AAA_11 PF13086.6 gi|212224086|ref|YP_002307322.1| - 0.024 14.4 0.1 0.26 11.0 0.0 2.5 2 1 1 3 3 3 0 AAA domain HypA PF01155.19 gi|212224086|ref|YP_002307322.1| - 0.032 14.2 0.0 0.1 12.6 0.0 1.9 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Ogr_Delta PF04606.12 gi|212224086|ref|YP_002307322.1| - 0.037 14.0 1.1 9.1 6.4 0.3 2.4 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger Zn_Tnp_IS1595 PF12760.7 gi|212224086|ref|YP_002307322.1| - 0.055 13.5 1.4 0.17 11.9 1.4 1.9 1 0 0 1 1 1 0 Transposase zinc-ribbon domain AAA_22 PF13401.6 gi|212224086|ref|YP_002307322.1| - 0.079 13.2 0.9 12 6.1 0.1 2.8 3 0 0 3 3 3 0 AAA domain UvrD-helicase PF00580.21 gi|212224086|ref|YP_002307322.1| - 0.081 12.4 0.3 0.16 11.5 0.0 1.6 2 0 0 2 2 2 0 UvrD/REP helicase N-terminal domain OrfB_Zn_ribbon PF07282.11 gi|212224086|ref|YP_002307322.1| - 0.18 11.8 0.8 1.8 8.5 1.3 2.3 2 0 0 2 2 2 0 Putative transposase DNA-binding domain Rubredoxin_2 PF18073.1 gi|212224086|ref|YP_002307322.1| - 8 6.3 5.7 22 4.9 0.4 2.3 2 0 0 2 2 2 0 Rubredoxin metal binding domain Peptidase_M20 PF01546.28 gi|212224087|ref|YP_002307323.1| - 1.4e-26 93.5 0.2 1.9e-26 93.0 0.2 1.1 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 Peptidase_M42 PF05343.14 gi|212224087|ref|YP_002307323.1| - 4.7e-09 35.7 0.0 3.3e-06 26.3 0.0 2.2 2 0 0 2 2 2 2 M42 glutamyl aminopeptidase M20_dimer PF07687.14 gi|212224087|ref|YP_002307323.1| - 6.1e-08 32.5 0.0 5.1e-07 29.6 0.0 2.3 1 1 0 1 1 1 1 Peptidase dimerisation domain Peptidase_M28 PF04389.17 gi|212224087|ref|YP_002307323.1| - 1.8e-07 31.1 0.0 2.6e-06 27.3 0.0 2.0 2 0 0 2 2 2 1 Peptidase family M28 Lactamase_B PF00753.27 gi|212224088|ref|YP_002307324.1| - 1.7e-27 96.7 1.4 2.2e-27 96.3 1.4 1.1 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|212224088|ref|YP_002307324.1| - 5.4e-06 26.1 0.1 1.4e-05 24.7 0.0 1.7 1 1 1 2 2 2 1 Beta-lactamase superfamily domain MJ1316 PF04457.12 gi|212224089|ref|YP_002307325.1| - 5.2e-13 49.5 0.3 5.9e-13 49.4 0.3 1.0 1 0 0 1 1 1 1 MJ1316 RNA cyclic group end recognition domain TatD_DNase PF01026.21 gi|212224090|ref|YP_002307326.1| - 8.2e-60 202.3 0.1 9.4e-60 202.1 0.1 1.0 1 0 0 1 1 1 1 TatD related DNase Amidohydro_1 PF01979.20 gi|212224090|ref|YP_002307326.1| - 0.0021 17.5 0.5 0.024 14.0 0.5 2.0 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_2 PF04909.14 gi|212224090|ref|YP_002307326.1| - 0.0023 17.8 1.0 0.023 14.5 0.7 2.7 1 1 1 2 2 2 1 Amidohydrolase NeuB PF03102.14 gi|212224090|ref|YP_002307326.1| - 0.12 11.8 0.0 0.21 11.0 0.0 1.5 1 0 0 1 1 1 0 NeuB family DUF3216 PF11505.8 gi|212224091|ref|YP_002307327.1| - 2.1e-32 111.1 1.8 2.3e-32 111.0 1.8 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3216) IFRD PF05004.13 gi|212224091|ref|YP_002307327.1| - 0.087 11.9 0.0 0.1 11.7 0.0 1.1 1 0 0 1 1 1 0 Interferon-related developmental regulator (IFRD) Pterin_bind PF00809.22 gi|212224092|ref|YP_002307328.1| - 8.3e-06 25.7 0.0 1.5e-05 24.8 0.0 1.3 1 0 0 1 1 1 1 Pterin binding enzyme DUF4346 PF14251.6 gi|212224092|ref|YP_002307328.1| - 0.00055 20.0 0.0 0.0016 18.4 0.0 1.8 1 0 0 1 1 1 1 Domain of unknown function (DUF4346) DUF72 PF01904.18 gi|212224093|ref|YP_002307329.1| - 1.1e-38 133.5 1.2 1.3e-38 133.3 1.2 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF72 2-Hacid_dh_C PF02826.19 gi|212224094|ref|YP_002307330.1| - 5.3e-68 227.9 0.0 8.7e-68 227.2 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.30 gi|212224094|ref|YP_002307330.1| - 3.6e-36 123.8 0.0 4.1e-36 123.6 0.0 1.0 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NAD_binding_2 PF03446.15 gi|212224094|ref|YP_002307330.1| - 1.5e-06 28.5 0.1 4.5e-06 26.9 0.0 1.8 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.17 gi|212224094|ref|YP_002307330.1| - 6.7e-06 26.6 0.0 1.7e-05 25.3 0.0 1.8 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent IlvN PF07991.12 gi|212224094|ref|YP_002307330.1| - 7.2e-06 25.7 0.0 1.7e-05 24.4 0.0 1.6 2 0 0 2 2 2 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain AdoHcyase_NAD PF00670.21 gi|212224094|ref|YP_002307330.1| - 1.8e-05 24.8 0.3 0.0028 17.7 0.0 2.5 2 1 0 2 2 2 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain AlaDh_PNT_C PF01262.21 gi|212224094|ref|YP_002307330.1| - 0.021 14.1 0.0 0.068 12.5 0.0 1.8 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain Shikimate_DH PF01488.20 gi|212224094|ref|YP_002307330.1| - 0.032 14.3 0.1 0.16 12.0 0.0 2.0 2 0 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase NAD_binding_7 PF13241.6 gi|212224094|ref|YP_002307330.1| - 0.042 14.3 0.0 0.18 12.2 0.0 1.9 2 0 0 2 2 2 0 Putative NAD(P)-binding GFO_IDH_MocA PF01408.22 gi|212224094|ref|YP_002307330.1| - 0.13 13.1 0.0 1.1 10.1 0.0 2.3 2 0 0 2 2 2 0 Oxidoreductase family, NAD-binding Rossmann fold Gp_dh_N PF00044.24 gi|212224094|ref|YP_002307330.1| - 0.22 11.9 1.8 0.51 10.7 1.8 1.6 1 0 0 1 1 1 0 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Aminotran_1_2 PF00155.21 gi|212224095|ref|YP_002307331.1| - 1e-41 143.4 0.0 1.2e-41 143.2 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_MocR PF12897.7 gi|212224095|ref|YP_002307331.1| - 5.2e-09 35.4 0.0 4.5e-07 29.0 0.0 2.2 2 0 0 2 2 2 2 Alanine-glyoxylate amino-transferase DegT_DnrJ_EryC1 PF01041.17 gi|212224095|ref|YP_002307331.1| - 0.00019 20.9 0.0 0.00049 19.5 0.0 1.6 1 1 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.21 gi|212224095|ref|YP_002307331.1| - 0.0002 20.8 0.0 0.00047 19.5 0.0 1.5 2 0 0 2 2 2 1 Beta-eliminating lyase tRNA_U5-meth_tr PF05958.11 gi|212224096|ref|YP_002307332.1| - 1.2e-21 77.1 0.0 2.7e-14 52.9 0.0 2.2 1 1 1 2 2 2 2 tRNA (Uracil-5-)-methyltransferase MTS PF05175.14 gi|212224096|ref|YP_002307332.1| - 4.5e-10 39.3 0.0 7.3e-10 38.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase small domain Met_10 PF02475.16 gi|212224096|ref|YP_002307332.1| - 9.5e-09 35.3 0.1 3.3e-08 33.5 0.0 1.8 2 0 0 2 2 2 1 Met-10+ like-protein Methyltransf_25 PF13649.6 gi|212224096|ref|YP_002307332.1| - 9.5e-08 32.7 0.0 1.2e-05 26.0 0.0 2.5 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|212224096|ref|YP_002307332.1| - 3.8e-06 26.8 0.0 6.4e-06 26.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.13 gi|212224096|ref|YP_002307332.1| - 0.00019 20.9 0.0 0.00036 20.0 0.0 1.4 2 0 0 2 2 2 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_11 PF08241.12 gi|212224096|ref|YP_002307332.1| - 0.0002 21.9 0.0 0.0043 17.7 0.0 2.5 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|212224096|ref|YP_002307332.1| - 0.0014 18.5 0.0 0.0037 17.1 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain Cons_hypoth95 PF03602.15 gi|212224096|ref|YP_002307332.1| - 0.002 17.8 0.0 0.0033 17.1 0.0 1.3 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_15 PF09445.10 gi|212224096|ref|YP_002307332.1| - 0.01 15.5 0.0 0.017 14.7 0.0 1.5 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase TPMT PF05724.11 gi|212224096|ref|YP_002307332.1| - 0.062 12.9 0.0 0.1 12.3 0.0 1.3 1 0 0 1 1 1 0 Thiopurine S-methyltransferase (TPMT) UPF0020 PF01170.18 gi|212224096|ref|YP_002307332.1| - 0.076 12.7 0.0 0.3 10.8 0.0 1.8 1 1 1 2 2 2 0 Putative RNA methylase family UPF0020 GTP_EFTU PF00009.27 gi|212224097|ref|YP_002307333.1| - 2e-34 118.8 0.1 7.7e-33 113.7 0.0 2.9 2 1 0 2 2 2 1 Elongation factor Tu GTP binding domain GTP_EFTU_D4 PF14578.6 gi|212224097|ref|YP_002307333.1| - 9e-30 102.4 1.3 3.2e-29 100.7 1.3 2.0 1 0 0 1 1 1 1 Elongation factor Tu domain 4 IF-2 PF11987.8 gi|212224097|ref|YP_002307333.1| - 1.3e-24 86.4 1.7 3.1e-24 85.1 1.7 1.7 1 0 0 1 1 1 1 Translation-initiation factor 2 GTP_EFTU_D2 PF03144.25 gi|212224097|ref|YP_002307333.1| - 1.5e-16 60.5 12.0 1.3e-13 51.1 0.2 3.8 4 0 0 4 4 4 2 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 gi|212224097|ref|YP_002307333.1| - 2.7e-09 37.1 0.1 1.1e-08 35.1 0.0 2.2 2 0 0 2 2 2 1 50S ribosome-binding GTPase Roc PF08477.13 gi|212224097|ref|YP_002307333.1| - 0.00027 21.1 0.0 0.0014 18.9 0.0 2.3 1 1 0 1 1 1 1 Ras of Complex, Roc, domain of DAPkinase MobB PF03205.14 gi|212224097|ref|YP_002307333.1| - 0.0058 16.5 0.4 15 5.5 0.0 3.5 3 0 0 3 3 3 1 Molybdopterin guanine dinucleotide synthesis protein B Dynamin_N PF00350.23 gi|212224097|ref|YP_002307333.1| - 0.011 15.8 0.2 0.88 9.6 0.0 3.1 2 1 1 3 3 3 0 Dynamin family ATP_bind_1 PF03029.17 gi|212224097|ref|YP_002307333.1| - 0.022 14.6 0.0 0.073 12.8 0.0 1.9 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein cobW PF02492.19 gi|212224097|ref|YP_002307333.1| - 0.037 13.6 0.7 2.2 7.8 0.1 3.3 3 1 1 4 4 4 0 CobW/HypB/UreG, nucleotide-binding domain Ras PF00071.22 gi|212224097|ref|YP_002307333.1| - 0.041 13.5 0.0 0.2 11.2 0.0 2.1 1 1 0 1 1 1 0 Ras family PsiE PF06146.12 gi|212224098|ref|YP_002307334.1| - 0.047 14.1 0.1 0.047 14.1 0.1 1.5 2 0 0 2 2 2 0 Phosphate-starvation-inducible E NDK PF00334.19 gi|212224100|ref|YP_002307336.1| - 2.1e-57 192.9 0.0 2.9e-57 192.4 0.0 1.2 1 0 0 1 1 1 1 Nucleoside diphosphate kinase Ribosomal_L24e PF01246.20 gi|212224101|ref|YP_002307337.1| - 2.5e-25 88.5 3.5 2.8e-25 88.3 3.5 1.1 1 0 0 1 1 1 1 Ribosomal protein L24e DUF3268 PF11672.8 gi|212224101|ref|YP_002307337.1| - 0.0056 17.0 0.2 0.0058 16.9 0.2 1.1 1 0 0 1 1 1 1 zinc-finger-containing domain zf-FCS PF06467.14 gi|212224101|ref|YP_002307337.1| - 0.0093 15.9 2.7 0.015 15.3 2.7 1.3 1 0 0 1 1 1 1 MYM-type Zinc finger with FCS sequence motif zf-C2HC_2 PF13913.6 gi|212224101|ref|YP_002307337.1| - 0.031 14.2 0.4 0.031 14.2 0.4 1.9 2 0 0 2 2 2 0 zinc-finger of a C2HC-type YHS PF04945.13 gi|212224101|ref|YP_002307337.1| - 0.041 14.0 0.8 0.061 13.4 0.5 1.5 1 1 0 1 1 1 0 YHS domain DUF2256 PF10013.9 gi|212224101|ref|YP_002307337.1| - 5 7.3 9.4 3 8.0 4.2 2.7 2 1 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2256) Ribosomal_S28e PF01200.18 gi|212224102|ref|YP_002307338.1| - 1.1e-29 102.2 5.6 1.2e-29 102.0 5.6 1.0 1 0 0 1 1 1 1 Ribosomal protein S28e Ribosomal_L7Ae PF01248.26 gi|212224103|ref|YP_002307339.1| - 5.6e-32 109.3 0.1 6.7e-32 109.1 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family PELOTA_1 PF15608.6 gi|212224103|ref|YP_002307339.1| - 0.00015 21.5 0.1 0.00023 21.0 0.1 1.3 1 0 0 1 1 1 1 PELOTA RNA binding domain eRF1_3 PF03465.15 gi|212224103|ref|YP_002307339.1| - 0.036 14.5 0.0 0.04 14.4 0.0 1.2 1 0 0 1 1 1 0 eRF1 domain 3 CobW_C PF07683.14 gi|212224103|ref|YP_002307339.1| - 0.18 11.7 0.0 0.25 11.3 0.0 1.2 1 0 0 1 1 1 0 Cobalamin synthesis protein cobW C-terminal domain eIF-5_eIF-2B PF01873.17 gi|212224104|ref|YP_002307340.1| - 2.7e-05 24.0 0.7 5.2e-05 23.1 0.7 1.5 1 0 0 1 1 1 1 Domain found in IF2B/IF5 TF_Zn_Ribbon PF08271.12 gi|212224104|ref|YP_002307340.1| - 0.00019 20.9 1.1 0.00045 19.7 1.1 1.6 1 0 0 1 1 1 1 TFIIB zinc-binding Zn_Tnp_IS1595 PF12760.7 gi|212224104|ref|YP_002307340.1| - 0.0051 16.8 0.2 0.0085 16.0 0.2 1.4 1 0 0 1 1 1 1 Transposase zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|212224104|ref|YP_002307340.1| - 0.02 14.3 0.6 4.9 6.7 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Elf1 PF05129.13 gi|212224104|ref|YP_002307340.1| - 0.021 14.9 0.1 0.038 14.0 0.1 1.4 1 0 0 1 1 1 0 Transcription elongation factor Elf1 like zinc_ribbon_4 PF13717.6 gi|212224104|ref|YP_002307340.1| - 0.059 13.3 3.1 0.33 10.9 2.5 2.5 2 1 0 2 2 2 0 zinc-ribbon domain Lar_restr_allev PF14354.6 gi|212224104|ref|YP_002307340.1| - 0.087 13.2 0.2 0.15 12.5 0.2 1.4 1 0 0 1 1 1 0 Restriction alleviation protein Lar DUF951 PF06107.11 gi|212224104|ref|YP_002307340.1| - 0.15 12.0 0.8 0.42 10.5 0.2 2.0 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF951) HypA PF01155.19 gi|212224104|ref|YP_002307340.1| - 0.18 11.9 1.2 3.7 7.6 1.9 2.5 1 1 1 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA OrfB_Zn_ribbon PF07282.11 gi|212224104|ref|YP_002307340.1| - 0.2 11.6 0.4 0.32 10.9 0.4 1.3 1 0 0 1 1 1 0 Putative transposase DNA-binding domain zf-RRN7 PF11781.8 gi|212224104|ref|YP_002307340.1| - 0.25 11.1 1.5 4.7 7.0 0.1 2.3 2 0 0 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 TFIIS_C PF01096.18 gi|212224104|ref|YP_002307340.1| - 0.26 11.2 3.3 7.4 6.5 3.3 2.2 1 1 0 1 1 1 0 Transcription factor S-II (TFIIS) DUF35_N PF12172.8 gi|212224104|ref|YP_002307340.1| - 0.27 11.2 2.2 1.9 8.5 0.2 2.3 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) DUF3797 PF12677.7 gi|212224104|ref|YP_002307340.1| - 0.56 10.1 3.0 1.7 8.6 0.1 2.4 1 1 1 2 2 2 0 Domain of unknown function (DUF3797) Zn-ribbon_8 PF09723.10 gi|212224104|ref|YP_002307340.1| - 0.63 10.2 3.7 4.1 7.6 0.2 2.3 1 1 0 2 2 2 0 Zinc ribbon domain DNA_RNApol_7kD PF03604.13 gi|212224104|ref|YP_002307340.1| - 2.5 7.9 4.9 10 5.9 4.9 2.0 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit zf-C2H2_6 PF13912.6 gi|212224104|ref|YP_002307340.1| - 2.9 8.0 5.6 56 3.9 0.2 3.6 4 0 0 4 4 4 0 C2H2-type zinc finger A2L_zn_ribbon PF08792.10 gi|212224104|ref|YP_002307340.1| - 5.1 6.9 5.2 26 4.7 0.6 2.4 1 1 1 2 2 2 0 A2L zinc ribbon domain Myosin_N PF02736.19 gi|212224104|ref|YP_002307340.1| - 5.7 6.9 9.5 32 4.5 0.6 3.6 3 0 0 3 3 3 0 Myosin N-terminal SH3-like domain MarR_2 PF12802.7 gi|212224105|ref|YP_002307341.1| - 1.2e-09 38.0 0.1 2.4e-09 36.9 0.1 1.4 1 0 0 1 1 1 1 MarR family MarR PF01047.22 gi|212224105|ref|YP_002307341.1| - 8.2e-08 32.1 0.1 1.8e-07 31.0 0.1 1.5 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|212224105|ref|YP_002307341.1| - 2.1e-07 30.7 2.1 2.7e-07 30.4 0.4 2.0 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 gi|212224105|ref|YP_002307341.1| - 2.9e-07 30.0 0.4 4.8e-07 29.2 0.4 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_Crp_2 PF13545.6 gi|212224105|ref|YP_002307341.1| - 3.7e-06 26.8 0.6 7.5e-06 25.8 0.1 1.8 2 0 0 2 2 1 1 Crp-like helix-turn-helix domain HTH_20 PF12840.7 gi|212224105|ref|YP_002307341.1| - 4.6e-06 26.6 0.1 8e-06 25.8 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|212224105|ref|YP_002307341.1| - 3.7e-05 23.5 0.4 7.8e-05 22.5 0.2 1.6 2 0 0 2 2 1 1 Bacterial regulatory protein, arsR family Fe_dep_repress PF01325.19 gi|212224105|ref|YP_002307341.1| - 0.00017 21.7 0.1 0.00036 20.7 0.1 1.5 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_27 PF13463.6 gi|212224105|ref|YP_002307341.1| - 0.00068 20.1 0.1 0.0015 19.0 0.1 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain Ribosomal_S25 PF03297.15 gi|212224105|ref|YP_002307341.1| - 0.00071 19.7 0.1 0.0012 19.0 0.1 1.4 1 0 0 1 1 1 1 S25 ribosomal protein DprA_WH PF17782.1 gi|212224105|ref|YP_002307341.1| - 0.00095 19.2 0.0 0.0016 18.5 0.0 1.3 1 0 0 1 1 1 1 DprA winged helix domain HTH_IclR PF09339.10 gi|212224105|ref|YP_002307341.1| - 0.0014 18.4 0.0 0.0026 17.5 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain Penicillinase_R PF03965.16 gi|212224105|ref|YP_002307341.1| - 0.0015 18.9 0.1 0.0033 17.8 0.1 1.5 1 0 0 1 1 1 1 Penicillinase repressor GntR PF00392.21 gi|212224105|ref|YP_002307341.1| - 0.0052 16.4 1.2 0.0067 16.1 0.4 1.6 2 0 0 2 2 1 1 Bacterial regulatory proteins, gntR family HTH_10 PF04967.12 gi|212224105|ref|YP_002307341.1| - 0.0086 15.9 0.1 0.025 14.3 0.1 1.7 1 0 0 1 1 1 1 HTH DNA binding domain Sulfolobus_pRN PF05584.11 gi|212224105|ref|YP_002307341.1| - 0.021 14.9 0.4 0.038 14.0 0.4 1.4 1 0 0 1 1 1 0 Sulfolobus plasmid regulatory protein HTH_11 PF08279.12 gi|212224105|ref|YP_002307341.1| - 0.034 14.1 0.1 0.071 13.1 0.1 1.6 1 0 0 1 1 1 0 HTH domain OppC_N PF12911.7 gi|212224105|ref|YP_002307341.1| - 0.035 14.1 0.0 0.15 12.0 0.0 2.1 2 0 0 2 2 2 0 N-terminal TM domain of oligopeptide transport permease C FaeA PF04703.12 gi|212224105|ref|YP_002307341.1| - 0.038 14.4 0.1 0.1 13.0 0.1 1.7 1 0 0 1 1 1 0 FaeA-like protein HTH_36 PF13730.6 gi|212224105|ref|YP_002307341.1| - 0.04 13.9 0.0 0.075 13.0 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain TFIIE_alpha PF02002.17 gi|212224105|ref|YP_002307341.1| - 0.05 13.5 0.4 0.13 12.1 0.2 1.8 2 0 0 2 2 1 0 TFIIE alpha subunit AbiEi_4 PF13338.6 gi|212224105|ref|YP_002307341.1| - 0.057 13.6 0.1 0.12 12.6 0.1 1.5 1 0 0 1 1 1 0 Transcriptional regulator, AbiEi antitoxin MerR PF00376.23 gi|212224105|ref|YP_002307341.1| - 0.09 12.6 1.1 0.51 10.2 1.1 2.2 1 1 0 1 1 1 0 MerR family regulatory protein Rrf2 PF02082.20 gi|212224105|ref|YP_002307341.1| - 0.12 12.8 0.1 0.22 11.9 0.1 1.5 1 0 0 1 1 1 0 Transcriptional regulator HTH_DeoR PF08220.12 gi|212224105|ref|YP_002307341.1| - 0.12 12.1 0.1 0.25 11.1 0.1 1.5 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain Sulf_transp PF04143.14 gi|212224105|ref|YP_002307341.1| - 0.14 11.7 0.2 0.24 10.9 0.2 1.4 1 0 0 1 1 1 0 Sulphur transport EAP30 PF04157.16 gi|212224105|ref|YP_002307341.1| - 0.15 11.4 0.0 0.37 10.0 0.0 1.8 1 1 0 1 1 1 0 EAP30/Vps36 family HTH_23 PF13384.6 gi|212224105|ref|YP_002307341.1| - 0.15 11.9 0.0 0.31 10.9 0.0 1.5 1 0 0 1 1 1 0 Homeodomain-like domain DUF2627 PF11118.8 gi|212224105|ref|YP_002307341.1| - 0.16 12.6 0.3 0.42 11.2 0.0 1.7 2 0 0 2 2 1 0 Protein of unknown function (DUF2627) PAPS_reduct PF01507.19 gi|212224106|ref|YP_002307342.1| - 1.7e-42 145.4 0.0 4.6e-42 144.0 0.0 1.8 2 0 0 2 2 2 1 Phosphoadenosine phosphosulfate reductase family PUA PF01472.20 gi|212224106|ref|YP_002307342.1| - 1.3e-14 53.9 0.2 3e-14 52.7 0.2 1.6 1 0 0 1 1 1 1 PUA domain Fer4_7 PF12838.7 gi|212224106|ref|YP_002307342.1| - 2.3e-09 37.7 10.3 7.4e-09 36.1 10.3 1.9 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|212224106|ref|YP_002307342.1| - 2.6e-08 33.9 8.3 6.4e-08 32.6 8.3 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|212224106|ref|YP_002307342.1| - 3.4e-07 29.8 15.6 5.6e-05 22.8 3.7 2.7 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|212224106|ref|YP_002307342.1| - 4.1e-07 30.4 4.0 0.011 16.3 0.1 2.9 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|212224106|ref|YP_002307342.1| - 1.1e-06 28.3 10.8 0.00039 20.3 1.8 2.8 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|212224106|ref|YP_002307342.1| - 6e-06 26.3 25.0 0.00023 21.2 14.2 2.5 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|212224106|ref|YP_002307342.1| - 8.4e-06 26.1 7.5 0.037 14.5 1.1 3.3 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|212224106|ref|YP_002307342.1| - 1.9e-05 25.5 9.0 0.062 14.2 1.4 3.1 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_21 PF14697.6 gi|212224106|ref|YP_002307342.1| - 2e-05 24.6 8.8 2e-05 24.6 8.8 2.0 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|212224106|ref|YP_002307342.1| - 3.1e-05 23.8 2.3 3.1e-05 23.8 2.3 2.9 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_4 PF12800.7 gi|212224106|ref|YP_002307342.1| - 0.0001 22.5 16.8 0.0038 17.6 1.6 3.1 3 0 0 3 3 3 2 4Fe-4S binding domain UPF0113 PF03657.13 gi|212224106|ref|YP_002307342.1| - 0.0047 17.2 0.0 0.013 15.8 0.0 1.7 1 0 0 1 1 1 1 UPF0113 PUA domain Fer4_22 PF17179.4 gi|212224106|ref|YP_002307342.1| - 0.015 16.2 5.0 0.18 12.7 0.2 2.9 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|212224106|ref|YP_002307342.1| - 0.041 14.8 3.3 0.041 14.8 3.3 3.1 4 0 0 4 4 2 0 4Fe-4S binding domain Fer4_13 PF13370.6 gi|212224106|ref|YP_002307342.1| - 0.15 12.6 8.4 1.1 9.8 0.8 2.6 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_19 PF06902.11 gi|212224106|ref|YP_002307342.1| - 0.74 9.9 6.8 4.8 7.3 0.8 3.4 3 0 0 3 3 3 0 Divergent 4Fe-4S mono-cluster ETF_QO PF05187.13 gi|212224106|ref|YP_002307342.1| - 1.2 9.3 4.6 4 7.6 1.7 2.3 1 1 1 2 2 2 0 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S Fer4_18 PF13746.6 gi|212224106|ref|YP_002307342.1| - 2.7 8.2 12.9 1 9.6 9.6 1.9 2 1 0 2 2 1 0 4Fe-4S dicluster domain Band_7 PF01145.25 gi|212224107|ref|YP_002307343.1| - 9.9e-42 142.9 5.2 1.9e-41 142.1 5.2 1.5 1 1 0 1 1 1 1 SPFH domain / Band 7 family Flot PF15975.5 gi|212224107|ref|YP_002307343.1| - 0.0062 16.7 5.8 0.0062 16.7 5.8 2.1 1 1 1 2 2 2 1 Flotillin Band_7_1 PF13421.6 gi|212224107|ref|YP_002307343.1| - 0.021 14.5 0.1 0.035 13.8 0.1 1.4 1 0 0 1 1 1 0 SPFH domain-Band 7 family NfeD PF01957.18 gi|212224108|ref|YP_002307344.1| - 2e-14 53.7 2.4 4.3e-14 52.6 2.4 1.5 1 0 0 1 1 1 1 NfeD-like C-terminal, partner-binding Intein_splicing PF14890.6 gi|212224108|ref|YP_002307344.1| - 0.0072 16.3 0.2 0.0082 16.1 0.2 1.1 1 0 0 1 1 1 1 Intein splicing domain DUF2754 PF10953.8 gi|212224108|ref|YP_002307344.1| - 0.0089 16.3 0.9 0.016 15.4 0.7 1.6 1 1 0 1 1 1 1 Protein of unknown function (DUF2754) SNARE_assoc PF09335.11 gi|212224108|ref|YP_002307344.1| - 0.033 14.7 1.7 0.039 14.4 1.1 1.4 1 1 0 1 1 1 0 SNARE associated Golgi protein D-ser_dehydrat PF14031.6 gi|212224108|ref|YP_002307344.1| - 0.042 14.5 0.1 0.066 13.9 0.1 1.2 1 0 0 1 1 1 0 Putative serine dehydratase domain 7TM_GPCR_Srh PF10318.9 gi|212224108|ref|YP_002307344.1| - 0.12 11.4 6.3 0.13 11.2 6.3 1.0 1 0 0 1 1 1 0 Serpentine type 7TM GPCR chemoreceptor Srh ARS2 PF04959.13 gi|212224108|ref|YP_002307344.1| - 0.22 11.9 0.6 0.36 11.2 0.6 1.3 1 1 0 1 1 1 0 Arsenite-resistance protein 2 KOW PF00467.29 gi|212224108|ref|YP_002307344.1| - 0.58 10.2 6.4 0.67 10.0 0.5 2.4 2 0 0 2 2 2 0 KOW motif DUF4401 PF14351.6 gi|212224108|ref|YP_002307344.1| - 1.5 8.0 8.0 2 7.7 8.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4401) Amidohydro_1 PF01979.20 gi|212224109|ref|YP_002307345.1| - 6.9e-58 196.6 0.0 8.1e-58 196.4 0.0 1.1 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|212224109|ref|YP_002307345.1| - 4.1e-17 62.8 0.2 5.8e-13 49.1 0.0 2.5 3 0 0 3 3 3 2 Amidohydrolase family tRNA-synt_2 PF00152.20 gi|212224110|ref|YP_002307346.1| - 1.5e-86 290.4 0.0 1.8e-86 290.1 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) tRNA_anti-codon PF01336.25 gi|212224110|ref|YP_002307346.1| - 2.1e-14 53.2 1.2 3.5e-14 52.5 1.2 1.4 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain SBP_bac_8 PF13416.6 gi|212224112|ref|YP_002307348.1| - 2.4e-33 116.2 3.6 3.3e-33 115.7 3.6 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.6 gi|212224112|ref|YP_002307348.1| - 1.9e-31 109.4 3.7 2.5e-31 108.9 3.7 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.6 gi|212224112|ref|YP_002307348.1| - 3.9e-27 95.5 0.0 5.9e-27 94.9 0.0 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|212224112|ref|YP_002307348.1| - 3.4e-23 83.1 8.7 3.4e-23 83.1 8.7 1.4 2 0 0 2 2 2 1 Bacterial extracellular solute-binding protein Na_Ca_ex PF01699.24 gi|212224113|ref|YP_002307349.1| - 1.4e-51 174.5 32.8 8.9e-26 90.7 14.2 2.0 2 0 0 2 2 2 2 Sodium/calcium exchanger protein DUF3917 PF13055.6 gi|212224113|ref|YP_002307349.1| - 6.3 7.3 10.4 0.17 12.3 0.4 3.3 3 1 0 3 3 3 0 Protein of unknown function (DUF3917) RseC_MucC PF04246.12 gi|212224113|ref|YP_002307349.1| - 8.5 6.3 10.2 2.4 8.1 3.5 2.9 2 0 0 2 2 2 0 Positive regulator of sigma(E), RseC/MucC NYN PF01936.18 gi|212224114|ref|YP_002307350.1| - 1.3e-21 77.6 0.0 1.7e-21 77.3 0.0 1.1 1 0 0 1 1 1 1 NYN domain DUF460 PF04312.13 gi|212224114|ref|YP_002307350.1| - 0.013 15.2 1.3 0.28 10.9 0.1 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF460) NYN PF01936.18 gi|212224115|ref|YP_002307351.1| - 4e-18 66.3 0.0 4.9e-18 66.0 0.0 1.1 1 0 0 1 1 1 1 NYN domain DUF374 PF04028.13 gi|212224115|ref|YP_002307351.1| - 0.00065 19.2 0.1 0.082 12.5 0.0 2.6 3 0 0 3 3 3 1 Domain of unknown function (DUF374) CoA_binding_2 PF13380.6 gi|212224115|ref|YP_002307351.1| - 0.01 16.3 0.3 0.09 13.3 0.1 2.0 1 1 1 2 2 2 0 CoA binding domain HAD PF12710.7 gi|212224115|ref|YP_002307351.1| - 0.026 14.9 0.0 0.1 13.0 0.0 1.7 1 1 1 2 2 2 0 haloacid dehalogenase-like hydrolase DUF4432 PF14486.6 gi|212224115|ref|YP_002307351.1| - 0.13 11.0 0.0 0.17 10.7 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4432) E1-E2_ATPase PF00122.20 gi|212224116|ref|YP_002307352.1| - 0.035 13.6 1.2 0.042 13.4 0.4 1.4 1 1 1 2 2 2 0 E1-E2 ATPase PsbH PF00737.20 gi|212224116|ref|YP_002307352.1| - 1.5 8.6 4.1 1.3 8.8 0.1 2.5 3 0 0 3 3 3 0 Photosystem II 10 kDa phosphoprotein Helicase_RecD PF05127.14 gi|212224117|ref|YP_002307353.1| - 3.7e-56 189.8 0.0 6.4e-56 189.0 0.0 1.4 1 0 0 1 1 1 1 Helicase GNAT_acetyltr_2 PF13718.6 gi|212224117|ref|YP_002307353.1| - 8.5e-48 162.7 0.0 2.5e-33 115.4 0.0 2.4 1 1 1 2 2 2 2 GNAT acetyltransferase 2 DUF1726 PF08351.11 gi|212224117|ref|YP_002307353.1| - 1.8e-33 114.3 0.0 6.4e-33 112.6 0.0 2.0 1 0 0 1 1 1 1 Domain of unknown function (DUF1726) tRNA_bind_2 PF13725.6 gi|212224117|ref|YP_002307353.1| - 0.00016 21.5 0.0 0.00052 19.8 0.0 1.9 1 1 0 1 1 1 1 Possible tRNA binding domain Acetyltransf_1 PF00583.25 gi|212224117|ref|YP_002307353.1| - 0.00071 19.8 0.0 0.0021 18.3 0.0 1.9 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family AAA_22 PF13401.6 gi|212224117|ref|YP_002307353.1| - 0.0056 17.0 0.0 0.27 11.5 0.0 2.8 2 0 0 2 2 2 1 AAA domain DEAD PF00270.29 gi|212224117|ref|YP_002307353.1| - 0.18 11.6 0.0 0.52 10.1 0.0 1.8 2 0 0 2 2 2 0 DEAD/DEAH box helicase Peptidase_S9 PF00326.21 gi|212224118|ref|YP_002307354.1| - 5.5e-60 202.4 0.0 7.8e-60 202.0 0.0 1.2 1 0 0 1 1 1 1 Prolyl oligopeptidase family PD40 PF07676.12 gi|212224118|ref|YP_002307354.1| - 6.2e-09 35.6 0.0 3.3e-08 33.3 0.0 2.3 1 0 0 1 1 1 1 WD40-like Beta Propeller Repeat Peptidase_S15 PF02129.18 gi|212224118|ref|YP_002307354.1| - 1.1e-08 35.0 0.0 2.3e-06 27.4 0.0 2.1 1 1 1 2 2 2 2 X-Pro dipeptidyl-peptidase (S15 family) DPPIV_N PF00930.21 gi|212224118|ref|YP_002307354.1| - 5e-08 32.1 0.0 0.057 12.2 0.0 3.8 3 1 1 4 4 4 3 Dipeptidyl peptidase IV (DPP IV) N-terminal region AXE1 PF05448.12 gi|212224118|ref|YP_002307354.1| - 1.2e-07 30.8 0.1 1e-05 24.4 0.1 2.2 1 1 0 1 1 1 1 Acetyl xylan esterase (AXE1) Abhydrolase_1 PF00561.20 gi|212224118|ref|YP_002307354.1| - 0.00019 21.1 0.1 0.00045 19.9 0.1 1.6 1 1 1 2 2 2 1 alpha/beta hydrolase fold DUF5050 PF16472.5 gi|212224118|ref|YP_002307354.1| - 0.00047 19.5 0.0 0.014 14.6 0.0 2.6 1 1 1 2 2 2 1 Domain of unknown function (DUF5050) DLH PF01738.18 gi|212224118|ref|YP_002307354.1| - 0.00062 19.4 0.0 0.0019 17.8 0.0 1.7 1 1 0 1 1 1 1 Dienelactone hydrolase family DUF2920 PF11144.8 gi|212224118|ref|YP_002307354.1| - 0.0032 16.7 0.0 0.043 13.0 0.0 2.0 2 0 0 2 2 2 1 Protein of unknown function (DUF2920) Hydrolase_4 PF12146.8 gi|212224118|ref|YP_002307354.1| - 0.018 14.3 0.1 0.53 9.5 0.0 2.1 2 0 0 2 2 2 0 Serine aminopeptidase, S33 NTP_transf_3 PF12804.7 gi|212224119|ref|YP_002307355.1| - 8.1e-05 23.0 0.0 0.00011 22.6 0.0 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain ArsR PF09824.9 gi|212224119|ref|YP_002307355.1| - 0.01 15.5 0.0 0.016 14.8 0.0 1.3 1 0 0 1 1 1 0 ArsR transcriptional regulator DUF1870 PF08965.10 gi|212224119|ref|YP_002307355.1| - 0.05 13.6 0.1 6 6.9 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF1870) DUF1955 PF09205.10 gi|212224120|ref|YP_002307356.1| - 0.043 13.6 0.0 0.046 13.4 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1955) ThuA PF06283.11 gi|212224120|ref|YP_002307356.1| - 0.047 13.9 0.0 0.052 13.7 0.0 1.1 1 0 0 1 1 1 0 Trehalose utilisation BioY PF02632.14 gi|212224122|ref|YP_002307358.1| - 1e-40 138.9 17.4 1.4e-40 138.5 17.4 1.2 1 0 0 1 1 1 1 BioY family ECF_trnsprt PF12822.7 gi|212224122|ref|YP_002307358.1| - 3e-05 24.2 18.9 3.8e-05 23.9 18.9 1.1 1 0 0 1 1 1 1 ECF transporter, substrate-specific component 7TM-7TMR_HD PF07698.11 gi|212224122|ref|YP_002307358.1| - 0.014 15.2 13.1 0.026 14.3 13.1 1.5 1 1 0 1 1 1 0 7TM receptor with intracellular HD hydrolase Colicin_V PF02674.16 gi|212224122|ref|YP_002307358.1| - 1.1 9.3 16.8 15 5.6 16.8 2.4 1 1 0 1 1 1 0 Colicin V production protein ABC_tran PF00005.27 gi|212224123|ref|YP_002307359.1| - 6e-31 107.8 0.0 7.8e-31 107.4 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|212224123|ref|YP_002307359.1| - 5.1e-13 49.5 0.1 7.9e-07 29.2 0.0 2.2 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|212224123|ref|YP_002307359.1| - 8.5e-10 38.4 0.0 6.7e-09 35.5 0.0 1.9 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain Mg_chelatase PF01078.21 gi|212224123|ref|YP_002307359.1| - 0.00013 21.4 0.0 0.0002 20.8 0.0 1.3 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI AAA_23 PF13476.6 gi|212224123|ref|YP_002307359.1| - 0.00032 21.3 0.0 0.00047 20.7 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_15 PF13175.6 gi|212224123|ref|YP_002307359.1| - 0.00055 19.8 0.0 0.00098 18.9 0.0 1.3 1 1 0 1 1 1 1 AAA ATPase domain AAA_33 PF13671.6 gi|212224123|ref|YP_002307359.1| - 0.00082 19.6 0.2 0.0025 18.0 0.2 1.7 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|212224123|ref|YP_002307359.1| - 0.00084 19.0 0.0 0.0015 18.2 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain NACHT PF05729.12 gi|212224123|ref|YP_002307359.1| - 0.0011 18.9 0.2 0.0058 16.6 0.1 2.0 2 0 0 2 2 2 1 NACHT domain RsgA_GTPase PF03193.16 gi|212224123|ref|YP_002307359.1| - 0.0019 18.1 0.0 0.0028 17.6 0.0 1.2 1 0 0 1 1 1 1 RsgA GTPase AAA_13 PF13166.6 gi|212224123|ref|YP_002307359.1| - 0.002 16.9 0.0 0.27 9.8 0.1 2.1 1 1 1 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|212224123|ref|YP_002307359.1| - 0.0032 17.9 0.1 0.0053 17.2 0.1 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_5 PF07728.14 gi|212224123|ref|YP_002307359.1| - 0.0032 17.5 0.0 0.0062 16.5 0.0 1.5 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) SbcCD_C PF13558.6 gi|212224123|ref|YP_002307359.1| - 0.0033 17.6 0.0 0.14 12.4 0.0 2.3 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit NTPase_1 PF03266.15 gi|212224123|ref|YP_002307359.1| - 0.0034 17.3 0.0 0.0069 16.3 0.0 1.5 1 0 0 1 1 1 1 NTPase AAA_30 PF13604.6 gi|212224123|ref|YP_002307359.1| - 0.0035 17.1 0.1 0.0044 16.8 0.1 1.4 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|212224123|ref|YP_002307359.1| - 0.0037 17.5 0.1 0.0093 16.2 0.1 1.9 1 1 0 1 1 1 1 AAA domain AAA PF00004.29 gi|212224123|ref|YP_002307359.1| - 0.0038 17.6 0.1 0.0084 16.5 0.1 1.8 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_18 PF13238.6 gi|212224123|ref|YP_002307359.1| - 0.0053 17.3 0.4 0.014 16.0 0.1 1.9 2 1 0 2 2 1 1 AAA domain TniB PF05621.11 gi|212224123|ref|YP_002307359.1| - 0.0059 16.0 0.0 0.59 9.5 0.0 2.2 2 0 0 2 2 2 1 Bacterial TniB protein SRP54 PF00448.22 gi|212224123|ref|YP_002307359.1| - 0.0074 15.9 0.1 0.011 15.4 0.1 1.2 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain NB-ARC PF00931.22 gi|212224123|ref|YP_002307359.1| - 0.01 15.1 0.1 0.016 14.4 0.1 1.3 1 0 0 1 1 1 0 NB-ARC domain IstB_IS21 PF01695.17 gi|212224123|ref|YP_002307359.1| - 0.012 15.4 0.1 0.054 13.2 0.0 1.9 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_28 PF13521.6 gi|212224123|ref|YP_002307359.1| - 0.013 15.7 0.1 0.043 14.1 0.1 1.8 1 1 1 2 2 2 0 AAA domain AAA_24 PF13479.6 gi|212224123|ref|YP_002307359.1| - 0.015 15.1 0.0 0.025 14.3 0.0 1.3 1 0 0 1 1 1 0 AAA domain cobW PF02492.19 gi|212224123|ref|YP_002307359.1| - 0.019 14.6 0.1 0.031 13.9 0.1 1.3 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain TsaE PF02367.17 gi|212224123|ref|YP_002307359.1| - 0.041 13.9 0.1 0.073 13.1 0.1 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_25 PF13481.6 gi|212224123|ref|YP_002307359.1| - 0.058 13.0 0.5 0.18 11.4 0.1 1.9 2 1 0 2 2 2 0 AAA domain PduV-EutP PF10662.9 gi|212224123|ref|YP_002307359.1| - 0.067 12.9 0.0 0.11 12.2 0.0 1.3 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation AAA_14 PF13173.6 gi|212224123|ref|YP_002307359.1| - 0.086 12.9 0.0 0.48 10.5 0.0 2.1 2 0 0 2 2 2 0 AAA domain ATPase_2 PF01637.18 gi|212224123|ref|YP_002307359.1| - 0.1 12.5 0.1 0.37 10.7 0.0 1.9 2 1 0 2 2 2 0 ATPase domain predominantly from Archaea APS_kinase PF01583.20 gi|212224123|ref|YP_002307359.1| - 0.12 12.3 0.0 0.26 11.2 0.0 1.5 1 0 0 1 1 1 0 Adenylylsulphate kinase RNA_helicase PF00910.22 gi|212224123|ref|YP_002307359.1| - 0.12 12.7 0.0 0.21 12.0 0.0 1.4 1 0 0 1 1 1 0 RNA helicase AAA_2 PF07724.14 gi|212224123|ref|YP_002307359.1| - 0.13 12.4 0.0 0.22 11.6 0.0 1.3 1 0 0 1 1 1 0 AAA domain (Cdc48 subfamily) DLIC PF05783.11 gi|212224123|ref|YP_002307359.1| - 0.14 10.9 0.1 0.17 10.7 0.1 1.1 1 0 0 1 1 1 0 Dynein light intermediate chain (DLIC) AAA_19 PF13245.6 gi|212224123|ref|YP_002307359.1| - 0.14 12.5 0.1 0.33 11.3 0.1 1.6 1 0 0 1 1 1 0 AAA domain KTI12 PF08433.10 gi|212224123|ref|YP_002307359.1| - 0.19 11.1 0.0 0.28 10.6 0.0 1.2 1 0 0 1 1 1 0 Chromatin associated protein KTI12 AAA_7 PF12775.7 gi|212224123|ref|YP_002307359.1| - 0.22 11.0 0.1 0.33 10.5 0.1 1.2 1 0 0 1 1 1 0 P-loop containing dynein motor region Zeta_toxin PF06414.12 gi|212224123|ref|YP_002307359.1| - 0.24 10.7 0.1 0.47 9.7 0.1 1.4 1 0 0 1 1 1 0 Zeta toxin CbiQ PF02361.16 gi|212224124|ref|YP_002307360.1| - 9e-27 94.1 13.0 1.6e-26 93.3 13.0 1.4 1 0 0 1 1 1 1 Cobalt transport protein Yip1 PF04893.17 gi|212224126|ref|YP_002307362.1| - 0.73 9.5 33.0 0.93 9.2 32.5 1.4 1 1 0 1 1 1 0 Yip1 domain DUF63 PF01889.17 gi|212224127|ref|YP_002307363.1| - 8.6e-71 239.3 18.7 9.6e-71 239.1 18.7 1.0 1 0 0 1 1 1 1 Membrane protein of unknown function DUF63 DUF1003 PF06210.11 gi|212224127|ref|YP_002307363.1| - 0.12 12.5 1.3 0.32 11.1 1.3 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF1003) DEAD PF00270.29 gi|212224128|ref|YP_002307364.1| - 1.6e-25 89.9 0.0 6.5e-25 87.9 0.0 2.0 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|212224128|ref|YP_002307364.1| - 8.3e-15 55.1 0.0 2.7e-14 53.4 0.0 1.9 1 0 0 1 1 1 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|212224128|ref|YP_002307364.1| - 2.2e-07 31.0 0.0 4.5e-07 30.0 0.0 1.5 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit SNF2_N PF00176.23 gi|212224128|ref|YP_002307364.1| - 0.0094 14.7 0.0 0.023 13.4 0.0 1.7 2 0 0 2 2 2 1 SNF2 family N-terminal domain CDC37_C PF08564.10 gi|212224128|ref|YP_002307364.1| - 0.092 12.9 0.0 6.6 6.9 0.0 2.9 2 0 0 2 2 2 0 Cdc37 C terminal domain ATPase PF06745.13 gi|212224128|ref|YP_002307364.1| - 0.13 11.5 0.0 0.29 10.4 0.0 1.5 1 0 0 1 1 1 0 KaiC GNAT_acetyltran PF12746.7 gi|212224128|ref|YP_002307364.1| - 0.16 11.5 0.7 1.4 8.4 0.4 2.1 2 0 0 2 2 2 0 GNAT acetyltransferase HTH_AsnC-type PF13404.6 gi|212224129|ref|YP_002307365.1| - 6.1e-14 51.6 2.4 1.6e-13 50.2 0.4 2.1 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.6 gi|212224129|ref|YP_002307365.1| - 8.7e-14 50.8 1.6 8.7e-14 50.8 1.6 1.9 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding MarR PF01047.22 gi|212224129|ref|YP_002307365.1| - 6.5e-07 29.2 0.3 1.6e-06 27.9 0.1 1.7 2 0 0 2 2 2 1 MarR family AsnC_trans_reg PF01037.21 gi|212224129|ref|YP_002307365.1| - 7.5e-06 25.8 0.0 1.4e-05 24.9 0.0 1.6 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain MarR_2 PF12802.7 gi|212224129|ref|YP_002307365.1| - 2.3e-05 24.2 0.4 5.6e-05 22.9 0.1 1.7 2 1 0 2 2 2 1 MarR family HTH_11 PF08279.12 gi|212224129|ref|YP_002307365.1| - 3.8e-05 23.6 0.4 3.8e-05 23.6 0.4 1.8 2 0 0 2 2 2 1 HTH domain HTH_20 PF12840.7 gi|212224129|ref|YP_002307365.1| - 4e-05 23.6 0.1 9.8e-05 22.3 0.0 1.7 2 0 0 2 2 1 1 Helix-turn-helix domain Dcc1 PF09724.9 gi|212224129|ref|YP_002307365.1| - 0.00092 18.6 0.0 0.001 18.4 0.0 1.1 1 0 0 1 1 1 1 Sister chromatid cohesion protein Dcc1 HTH_IclR PF09339.10 gi|212224129|ref|YP_002307365.1| - 0.0014 18.3 0.0 0.0027 17.5 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain Tsc35 PF15079.6 gi|212224129|ref|YP_002307365.1| - 0.0019 17.8 0.6 0.0052 16.4 0.4 1.6 1 1 1 2 2 2 1 Testis-specific protein 35 HTH_9 PF08221.11 gi|212224129|ref|YP_002307365.1| - 0.003 17.6 0.2 0.067 13.3 0.1 2.3 2 0 0 2 2 2 1 RNA polymerase III subunit RPC82 helix-turn-helix domain Fe_dep_repress PF01325.19 gi|212224129|ref|YP_002307365.1| - 0.0087 16.2 0.1 0.019 15.2 0.1 1.5 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain TrmB PF01978.19 gi|212224129|ref|YP_002307365.1| - 0.0098 15.8 0.4 0.02 14.7 0.1 1.7 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_Mga PF08280.11 gi|212224129|ref|YP_002307365.1| - 0.019 15.0 0.0 0.042 13.9 0.0 1.6 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain HTH_DeoR PF08220.12 gi|212224129|ref|YP_002307365.1| - 0.02 14.6 0.0 0.052 13.3 0.0 1.7 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain UPF0728 PF15092.6 gi|212224129|ref|YP_002307365.1| - 0.042 13.7 0.1 0.37 10.6 0.0 2.2 2 1 1 3 3 3 0 Uncharacterised protein family UPF0728 Sigma70_r4 PF04545.16 gi|212224129|ref|YP_002307365.1| - 0.047 13.2 0.2 0.11 12.0 0.2 1.7 1 0 0 1 1 1 0 Sigma-70, region 4 LexA_DNA_bind PF01726.16 gi|212224129|ref|YP_002307365.1| - 0.047 13.5 0.2 0.11 12.2 0.2 1.7 1 1 0 1 1 1 0 LexA DNA binding domain TfoX_C PF04994.13 gi|212224129|ref|YP_002307365.1| - 0.051 13.7 0.0 0.12 12.5 0.0 1.6 1 1 0 1 1 1 0 TfoX C-terminal domain HTH_Crp_2 PF13545.6 gi|212224129|ref|YP_002307365.1| - 0.088 12.8 0.3 0.2 11.6 0.0 1.8 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain FeoC PF09012.10 gi|212224129|ref|YP_002307365.1| - 0.1 12.7 0.0 0.19 11.8 0.0 1.4 1 0 0 1 1 1 0 FeoC like transcriptional regulator HTH_53 PF18606.1 gi|212224129|ref|YP_002307365.1| - 0.12 12.1 0.1 0.19 11.4 0.1 1.3 1 0 0 1 1 1 0 Zap helix turn helix N-terminal domain HTH_5 PF01022.20 gi|212224129|ref|YP_002307365.1| - 0.13 12.1 0.1 0.21 11.5 0.1 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family tRNA-synt_1b PF00579.25 gi|212224130|ref|YP_002307366.1| - 6.7e-44 150.4 0.3 1.2e-43 149.6 0.3 1.4 1 1 0 1 1 1 1 tRNA synthetases class I (W and Y) DUF3232 PF11554.8 gi|212224130|ref|YP_002307366.1| - 0.088 13.2 0.2 15 6.0 0.0 3.0 3 0 0 3 3 3 0 Protein of unknown function (DUF3232) ABC_transp_aux PF09822.9 gi|212224131|ref|YP_002307367.1| - 0.0011 18.5 0.0 0.0096 15.4 0.0 1.9 1 1 1 2 2 2 1 ABC-type uncharacterized transport system DUF4350 PF14258.6 gi|212224131|ref|YP_002307367.1| - 0.0031 17.9 0.1 1 9.9 0.0 2.6 2 0 0 2 2 2 2 Domain of unknown function (DUF4350) SBP_bac_8 PF13416.6 gi|212224132|ref|YP_002307368.1| - 2.3e-19 70.3 3.6 2.3e-19 70.3 3.6 2.0 1 1 1 2 2 2 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|212224132|ref|YP_002307368.1| - 1.8e-17 64.2 7.1 4.2e-17 63.1 7.1 1.6 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.6 gi|212224132|ref|YP_002307368.1| - 3.5e-17 62.7 1.5 8e-17 61.5 1.5 1.6 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.6 gi|212224132|ref|YP_002307368.1| - 7.7e-06 25.8 0.2 2.1e-05 24.4 0.0 1.8 2 1 0 2 2 2 1 Bacterial extracellular solute-binding protein SHOCT PF09851.9 gi|212224132|ref|YP_002307368.1| - 0.32 10.8 1.4 0.69 9.7 1.4 1.6 1 0 0 1 1 1 0 Short C-terminal domain BPD_transp_1 PF00528.22 gi|212224133|ref|YP_002307369.1| - 1.3e-25 90.2 40.8 1.3e-15 57.7 13.7 4.1 2 2 2 4 4 4 3 Binding-protein-dependent transport system inner membrane component DUF5367 PF17329.2 gi|212224133|ref|YP_002307369.1| - 0.015 15.4 2.1 0.015 15.4 2.1 4.8 7 0 0 7 7 7 0 Family of unknown function (DUF5367) ABC_tran PF00005.27 gi|212224134|ref|YP_002307370.1| - 1.7e-34 119.3 0.0 2.7e-34 118.6 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|212224134|ref|YP_002307370.1| - 1.1e-07 32.0 0.3 0.0027 17.6 0.0 2.3 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system TOBE_2 PF08402.10 gi|212224134|ref|YP_002307370.1| - 2.1e-07 31.0 0.3 9.6e-07 28.9 0.0 2.3 3 0 0 3 3 3 1 TOBE domain Rad17 PF03215.15 gi|212224134|ref|YP_002307370.1| - 0.0035 17.3 0.0 0.006 16.5 0.0 1.3 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_25 PF13481.6 gi|212224134|ref|YP_002307370.1| - 0.0098 15.5 0.0 0.52 9.9 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA PF00004.29 gi|212224134|ref|YP_002307370.1| - 0.017 15.5 0.3 0.24 11.8 0.3 2.4 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_29 PF13555.6 gi|212224134|ref|YP_002307370.1| - 0.071 12.9 0.1 0.15 11.9 0.1 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain Myosin_N PF02736.19 gi|212224134|ref|YP_002307370.1| - 0.071 12.9 0.0 0.29 11.0 0.0 2.1 1 0 0 1 1 1 0 Myosin N-terminal SH3-like domain AAA_22 PF13401.6 gi|212224134|ref|YP_002307370.1| - 0.083 13.2 1.7 1.2 9.5 1.7 2.2 1 1 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 gi|212224134|ref|YP_002307370.1| - 0.091 12.7 0.1 0.35 10.8 0.0 1.8 2 0 0 2 2 2 0 RsgA GTPase AAA_28 PF13521.6 gi|212224134|ref|YP_002307370.1| - 0.11 12.7 0.2 2 8.6 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_23 PF13476.6 gi|212224134|ref|YP_002307370.1| - 0.2 12.2 0.3 0.38 11.2 0.3 1.5 1 0 0 1 1 1 0 AAA domain MazE_antitoxin PF04014.18 gi|212224134|ref|YP_002307370.1| - 1.1 9.3 4.1 48 4.0 0.1 3.4 3 0 0 3 3 3 0 Antidote-toxin recognition MazE, bacterial antitoxin DUF447 PF04289.12 gi|212224135|ref|YP_002307371.1| - 2.9e-23 82.6 0.0 3.5e-23 82.3 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF447) Metallophos PF00149.28 gi|212224136|ref|YP_002307372.1| - 2.9e-09 37.7 8.2 6.6e-09 36.6 8.2 1.7 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Big_7 PF17957.1 gi|212224136|ref|YP_002307372.1| - 8.2 7.3 9.9 79 4.1 8.4 3.2 2 1 0 2 2 2 0 Bacterial Ig domain PAPS_reduct PF01507.19 gi|212224137|ref|YP_002307373.1| - 0.021 14.8 0.6 0.035 14.1 0.1 1.6 2 0 0 2 2 2 0 Phosphoadenosine phosphosulfate reductase family Mrr_cat PF04471.12 gi|212224138|ref|YP_002307374.1| - 2.3e-15 56.6 1.8 4.6e-15 55.6 0.0 2.5 4 0 0 4 4 4 1 Restriction endonuclease PepSY PF03413.19 gi|212224138|ref|YP_002307374.1| - 0.001 19.6 9.4 0.72 10.5 0.1 5.7 5 0 0 5 5 5 1 Peptidase propeptide and YPEB domain Mrr_cat_2 PF13156.6 gi|212224138|ref|YP_002307374.1| - 0.0021 17.9 0.0 0.028 14.3 0.0 2.4 2 0 0 2 2 2 1 Restriction endonuclease PepSY_like PF11396.8 gi|212224138|ref|YP_002307374.1| - 0.0078 16.7 4.2 0.028 14.9 0.2 3.6 5 1 0 5 5 5 1 Putative beta-lactamase-inhibitor-like, PepSY-like PGK PF00162.19 gi|212224139|ref|YP_002307375.1| - 6.3e-106 354.5 0.0 7.3e-106 354.3 0.0 1.0 1 0 0 1 1 1 1 Phosphoglycerate kinase DUF2244 PF10003.9 gi|212224140|ref|YP_002307376.1| - 1.2 8.8 14.4 1.2 8.8 4.8 2.0 2 0 0 2 2 2 0 Integral membrane protein (DUF2244) ABC2_membrane PF01061.24 gi|212224141|ref|YP_002307377.1| - 3.7e-44 150.7 23.4 4.7e-44 150.3 23.4 1.1 1 0 0 1 1 1 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|212224141|ref|YP_002307377.1| - 2.4e-18 66.4 23.7 2.4e-18 66.4 23.7 1.3 1 1 0 1 1 1 1 ABC-2 family transporter protein DUF3894 PF13033.6 gi|212224141|ref|YP_002307377.1| - 0.69 10.1 7.1 6.5 6.9 0.2 3.2 3 1 0 3 3 3 0 Protein of unknown function (DUF3894) ABC2_membrane_2 PF12679.7 gi|212224141|ref|YP_002307377.1| - 4.8 6.4 20.7 13 5.0 20.7 1.8 1 1 0 1 1 1 0 ABC-2 family transporter protein DUF423 PF04241.15 gi|212224141|ref|YP_002307377.1| - 9.1 6.6 10.7 2.7 8.2 3.1 2.8 2 1 1 3 3 3 0 Protein of unknown function (DUF423) ABC_tran PF00005.27 gi|212224142|ref|YP_002307378.1| - 4.2e-35 121.2 0.0 7.4e-35 120.4 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|212224142|ref|YP_002307378.1| - 2.2e-10 40.9 1.5 1.7e-07 31.4 0.1 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 gi|212224142|ref|YP_002307378.1| - 1.9e-09 38.1 0.0 4.4e-09 36.9 0.0 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_15 PF13175.6 gi|212224142|ref|YP_002307378.1| - 6e-06 26.2 0.2 0.082 12.6 0.0 2.3 1 1 1 2 2 2 2 AAA ATPase domain AAA_23 PF13476.6 gi|212224142|ref|YP_002307378.1| - 3.6e-05 24.4 0.0 6.6e-05 23.5 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|212224142|ref|YP_002307378.1| - 0.00076 19.2 0.0 0.0015 18.2 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA PF00004.29 gi|212224142|ref|YP_002307378.1| - 0.0023 18.4 0.3 0.061 13.7 0.3 2.8 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) SRP54 PF00448.22 gi|212224142|ref|YP_002307378.1| - 0.004 16.8 0.1 0.0074 15.9 0.1 1.4 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain AAA_27 PF13514.6 gi|212224142|ref|YP_002307378.1| - 0.0068 16.0 0.0 0.014 15.0 0.0 1.4 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|212224142|ref|YP_002307378.1| - 0.055 12.9 0.2 0.63 9.4 0.2 2.1 1 1 0 1 1 1 0 RecF/RecN/SMC N terminal domain AAA_30 PF13604.6 gi|212224142|ref|YP_002307378.1| - 0.058 13.1 0.0 0.22 11.2 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_13 PF13166.6 gi|212224142|ref|YP_002307378.1| - 0.086 11.5 0.0 2.1 6.9 0.0 2.0 2 0 0 2 2 2 0 AAA domain Peptidase_S24 PF00717.23 gi|212224142|ref|YP_002307378.1| - 0.13 12.3 0.0 4.9 7.2 0.0 2.7 2 0 0 2 2 2 0 Peptidase S24-like Rad17 PF03215.15 gi|212224142|ref|YP_002307378.1| - 0.14 12.0 0.0 0.2 11.5 0.0 1.3 1 0 0 1 1 1 0 Rad17 P-loop domain RsgA_GTPase PF03193.16 gi|212224142|ref|YP_002307378.1| - 0.15 12.0 0.0 0.31 10.9 0.0 1.5 1 0 0 1 1 1 0 RsgA GTPase Zeta_toxin PF06414.12 gi|212224142|ref|YP_002307378.1| - 0.15 11.3 0.0 0.36 10.1 0.0 1.6 1 0 0 1 1 1 0 Zeta toxin PadR PF03551.14 gi|212224143|ref|YP_002307379.1| - 2.5e-16 59.4 1.0 6e-16 58.2 1.0 1.6 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_45 PF14947.6 gi|212224143|ref|YP_002307379.1| - 5.2e-06 26.3 0.3 8.6e-06 25.7 0.3 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DUF3106 PF11304.8 gi|212224143|ref|YP_002307379.1| - 0.0032 17.9 0.3 0.005 17.3 0.3 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF3106) Imm71 PF15602.6 gi|212224143|ref|YP_002307379.1| - 0.0095 16.0 0.8 0.011 15.8 0.8 1.1 1 0 0 1 1 1 1 Immunity protein 71 DUF5343 PF17278.2 gi|212224143|ref|YP_002307379.1| - 0.012 15.7 0.1 0.042 13.9 0.1 1.8 1 1 1 2 2 2 0 Family of unknown function (DUF5343) FUR PF01475.19 gi|212224143|ref|YP_002307379.1| - 0.015 15.5 0.0 0.026 14.7 0.0 1.5 1 1 0 1 1 1 0 Ferric uptake regulator family TrmB PF01978.19 gi|212224143|ref|YP_002307379.1| - 0.023 14.6 0.2 0.049 13.5 0.1 1.7 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB DUF4364 PF14277.6 gi|212224143|ref|YP_002307379.1| - 0.025 14.3 0.2 0.045 13.5 0.1 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4364) DUF4047 PF13256.6 gi|212224143|ref|YP_002307379.1| - 0.032 14.4 0.0 0.042 14.0 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4047) TetR_C_24 PF17932.1 gi|212224143|ref|YP_002307379.1| - 0.035 14.4 3.5 0.064 13.5 0.7 2.1 2 0 0 2 2 2 0 Tetracyclin repressor-like, C-terminal domain Replic_Relax PF13814.6 gi|212224143|ref|YP_002307379.1| - 0.04 14.0 0.1 0.065 13.3 0.1 1.4 1 0 0 1 1 1 0 Replication-relaxation Metal_resist PF13801.6 gi|212224143|ref|YP_002307379.1| - 0.063 13.5 1.7 0.1 12.8 0.7 1.9 1 1 1 2 2 2 0 Heavy-metal resistance HTH_34 PF13601.6 gi|212224143|ref|YP_002307379.1| - 0.071 13.3 0.1 0.15 12.3 0.1 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain Malate_DH PF12434.8 gi|212224143|ref|YP_002307379.1| - 0.072 13.1 0.0 0.21 11.6 0.0 1.8 1 0 0 1 1 1 0 Malate dehydrogenase enzyme CDC48_2 PF02933.17 gi|212224144|ref|YP_002307380.1| - 0.0028 17.4 0.1 0.0071 16.1 0.1 1.7 1 0 0 1 1 1 1 Cell division protein 48 (CDC48), domain 2 UpxZ PF06603.11 gi|212224144|ref|YP_002307380.1| - 0.066 13.5 0.0 0.098 13.0 0.0 1.2 1 0 0 1 1 1 0 UpxZ family of transcription anti-terminator antagonists WG_beta_rep PF14903.6 gi|212224144|ref|YP_002307380.1| - 0.21 11.9 0.7 9.3 6.6 0.2 2.7 2 0 0 2 2 2 0 WG containing repeat HhH-GPD PF00730.25 gi|212224145|ref|YP_002307381.1| - 2.2e-17 63.5 0.0 3.3e-17 62.9 0.0 1.3 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.23 gi|212224145|ref|YP_002307381.1| - 4.5e-07 29.4 0.1 1.7e-06 27.6 0.0 2.0 2 0 0 2 2 2 1 Helix-hairpin-helix motif EndIII_4Fe-2S PF10576.9 gi|212224145|ref|YP_002307381.1| - 0.0029 17.9 9.1 0.0051 17.1 9.1 1.4 1 0 0 1 1 1 1 Iron-sulfur binding domain of endonuclease III Scm3 PF10384.9 gi|212224145|ref|YP_002307381.1| - 0.016 15.0 0.1 0.04 13.7 0.1 1.6 1 0 0 1 1 1 0 Centromere protein Scm3 HHH_5 PF14520.6 gi|212224145|ref|YP_002307381.1| - 0.12 13.0 0.8 1.7 9.3 0.0 2.8 3 0 0 3 3 3 0 Helix-hairpin-helix domain HHH_2 PF12826.7 gi|212224145|ref|YP_002307381.1| - 0.12 12.5 0.0 11 6.2 0.0 2.3 2 0 0 2 2 2 0 Helix-hairpin-helix motif TrkA_C PF02080.21 gi|212224146|ref|YP_002307382.1| - 2e-16 59.5 0.2 3.8e-16 58.7 0.2 1.5 1 0 0 1 1 1 1 TrkA-C domain PhoU PF01895.19 gi|212224146|ref|YP_002307382.1| - 1.3e-08 35.1 5.5 2.2e-08 34.4 5.5 1.4 1 0 0 1 1 1 1 PhoU domain DUF4349 PF14257.6 gi|212224146|ref|YP_002307382.1| - 0.053 13.0 0.9 0.08 12.4 0.9 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4349) TrkA_C PF02080.21 gi|212224147|ref|YP_002307383.1| - 3.7e-13 49.1 0.0 6.9e-13 48.2 0.0 1.4 1 0 0 1 1 1 1 TrkA-C domain PhoU PF01895.19 gi|212224147|ref|YP_002307383.1| - 8.4e-09 35.8 4.2 1.4e-08 35.1 4.2 1.4 1 0 0 1 1 1 1 PhoU domain Mgr1 PF08602.10 gi|212224147|ref|YP_002307383.1| - 0.2 10.4 0.0 0.23 10.2 0.0 1.1 1 0 0 1 1 1 0 Mgr1-like, i-AAA protease complex subunit MgtE PF01769.16 gi|212224148|ref|YP_002307384.1| - 4.6e-38 130.4 28.0 3.9e-22 78.9 7.6 3.6 4 0 0 4 4 4 2 Divalent cation transporter DUF418 PF04235.12 gi|212224148|ref|YP_002307384.1| - 1.9 8.4 12.0 0.082 12.8 2.3 3.2 2 1 2 4 4 4 0 Protein of unknown function (DUF418) MotB_plug PF13677.6 gi|212224148|ref|YP_002307384.1| - 8.7 6.0 11.0 3.6 7.2 0.5 3.2 3 0 0 3 3 3 0 Membrane MotB of proton-channel complex MotA/MotB AP_endonuc_2 PF01261.24 gi|212224149|ref|YP_002307385.1| - 5.2e-36 124.1 0.1 6.4e-36 123.8 0.1 1.0 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel HMGL-like PF00682.19 gi|212224149|ref|YP_002307385.1| - 0.076 12.6 0.0 0.11 12.0 0.0 1.1 1 0 0 1 1 1 0 HMGL-like Succ_CoA_lig PF13607.6 gi|212224150|ref|YP_002307386.1| - 7.2e-57 191.1 5.4 3.3e-56 188.9 0.5 3.0 4 0 0 4 4 4 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.6 gi|212224150|ref|YP_002307386.1| - 4.4e-27 94.9 0.1 3e-25 89.0 0.0 3.0 3 0 0 3 3 3 1 CoA binding domain CoA_binding PF02629.19 gi|212224150|ref|YP_002307386.1| - 4.8e-15 56.0 0.3 1.4e-14 54.6 0.3 1.9 1 0 0 1 1 1 1 CoA binding domain Asparaginase_C PF17763.1 gi|212224150|ref|YP_002307386.1| - 0.0031 17.7 0.2 0.053 13.7 0.0 2.7 3 0 0 3 3 3 1 Glutaminase/Asparaginase C-terminal domain Ligase_CoA PF00549.19 gi|212224150|ref|YP_002307386.1| - 0.0099 15.7 0.0 0.031 14.1 0.0 1.8 1 0 0 1 1 1 1 CoA-ligase F420_oxidored PF03807.17 gi|212224150|ref|YP_002307386.1| - 0.1 13.2 1.6 1.8 9.2 0.0 3.2 3 1 0 3 3 3 0 NADP oxidoreductase coenzyme F420-dependent GFO_IDH_MocA PF01408.22 gi|212224150|ref|YP_002307386.1| - 0.14 13.0 0.0 0.75 10.6 0.0 2.2 2 0 0 2 2 2 0 Oxidoreductase family, NAD-binding Rossmann fold ATP-grasp_5 PF13549.6 gi|212224151|ref|YP_002307387.1| - 4.3e-82 274.9 0.4 4.8e-82 274.7 0.4 1.0 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_2 PF08442.10 gi|212224151|ref|YP_002307387.1| - 6.1e-06 25.9 0.1 1.4e-05 24.8 0.1 1.8 1 1 0 2 2 2 1 ATP-grasp domain CPSase_L_D2 PF02786.17 gi|212224151|ref|YP_002307387.1| - 0.0026 17.3 0.0 0.0055 16.2 0.0 1.5 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain WW_1 PF18507.1 gi|212224151|ref|YP_002307387.1| - 0.048 13.4 0.2 0.14 11.9 0.2 1.8 1 0 0 1 1 1 0 WW domain DUF3040 PF11239.8 gi|212224152|ref|YP_002307388.1| - 0.25 11.6 7.0 2.5 8.5 2.1 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF3040) MARVEL PF01284.23 gi|212224152|ref|YP_002307388.1| - 0.66 10.0 12.4 0.24 11.4 9.3 1.7 1 1 1 2 2 2 0 Membrane-associating domain PALP PF00291.25 gi|212224153|ref|YP_002307389.1| - 2e-46 158.7 0.0 1.5e-45 155.9 0.0 1.8 1 1 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme RE_AccI PF09545.10 gi|212224153|ref|YP_002307389.1| - 0.02 13.9 0.1 2 7.3 0.1 2.5 1 1 2 3 3 3 0 AccI restriction endonuclease Glucosamine_iso PF01182.20 gi|212224153|ref|YP_002307389.1| - 0.048 13.5 0.0 0.071 13.0 0.0 1.3 1 0 0 1 1 1 0 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase ThiI PF02568.14 gi|212224155|ref|YP_002307391.1| - 4.3e-60 202.7 0.0 5.2e-60 202.4 0.0 1.0 1 0 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) QueC PF06508.13 gi|212224155|ref|YP_002307391.1| - 5.6e-09 35.8 0.0 7.2e-05 22.4 0.0 2.3 2 1 0 2 2 2 2 Queuosine biosynthesis protein QueC tRNA_Me_trans PF03054.16 gi|212224155|ref|YP_002307391.1| - 8.1e-05 21.6 0.0 0.00027 19.9 0.0 1.9 2 1 1 3 3 3 1 tRNA methyl transferase PAPS_reduct PF01507.19 gi|212224155|ref|YP_002307391.1| - 0.033 14.2 0.0 0.038 14.0 0.0 1.1 1 0 0 1 1 1 0 Phosphoadenosine phosphosulfate reductase family YyzF PF14116.6 gi|212224155|ref|YP_002307391.1| - 0.038 14.0 0.0 0.094 12.8 0.0 1.6 1 0 0 1 1 1 0 YyzF-like protein ATP_bind_3 PF01171.20 gi|212224155|ref|YP_002307391.1| - 0.043 13.6 0.0 0.49 10.1 0.0 2.1 1 1 0 1 1 1 0 PP-loop family Diphthami_syn_2 PF01902.17 gi|212224155|ref|YP_002307391.1| - 0.11 12.0 0.1 0.39 10.2 0.0 1.9 2 0 0 2 2 2 0 Diphthamide synthase UvrA_inter PF17760.1 gi|212224155|ref|YP_002307391.1| - 0.13 12.3 0.1 19 5.4 0.0 2.3 2 0 0 2 2 2 0 UvrA interaction domain DUF998 PF06197.13 gi|212224156|ref|YP_002307392.1| - 2.2e-13 50.2 18.1 2.6e-13 50.0 18.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF998) Jagunal PF07086.12 gi|212224156|ref|YP_002307392.1| - 0.52 10.4 5.2 0.76 9.8 5.2 1.2 1 0 0 1 1 1 0 Jagunal, ER re-organisation during oogenesis ThiI PF02568.14 gi|212224157|ref|YP_002307393.1| - 2.3e-65 219.9 0.0 5.5e-65 218.7 0.0 1.6 2 0 0 2 2 2 1 Thiamine biosynthesis protein (ThiI) THUMP PF02926.17 gi|212224157|ref|YP_002307393.1| - 2.2e-25 89.4 9.1 2.2e-25 89.4 9.1 1.9 2 0 0 2 2 2 1 THUMP domain QueC PF06508.13 gi|212224157|ref|YP_002307393.1| - 7.8e-09 35.3 0.0 0.00051 19.6 0.0 2.6 2 0 0 2 2 2 2 Queuosine biosynthesis protein QueC tRNA_Me_trans PF03054.16 gi|212224157|ref|YP_002307393.1| - 9.6e-06 24.6 0.0 9e-05 21.4 0.0 2.2 2 0 0 2 2 2 1 tRNA methyl transferase PAPS_reduct PF01507.19 gi|212224157|ref|YP_002307393.1| - 3.9e-05 23.7 0.3 0.00019 21.5 0.0 1.9 2 0 0 2 2 2 1 Phosphoadenosine phosphosulfate reductase family HTH_ParB PF17762.1 gi|212224157|ref|YP_002307393.1| - 0.011 15.6 0.1 0.67 9.8 0.0 3.1 3 0 0 3 3 3 0 HTH domain found in ParB protein ATP_bind_3 PF01171.20 gi|212224157|ref|YP_002307393.1| - 0.026 14.3 0.0 0.76 9.5 0.0 2.5 2 0 0 2 2 2 0 PP-loop family PrpR_N PF06506.11 gi|212224157|ref|YP_002307393.1| - 0.097 12.2 0.0 0.23 11.0 0.0 1.7 1 0 0 1 1 1 0 Propionate catabolism activator Ndc1_Nup PF09531.10 gi|212224158|ref|YP_002307394.1| - 0.036 12.8 2.7 0.04 12.6 2.7 1.0 1 0 0 1 1 1 0 Nucleoporin protein Ndc1-Nup Nitroreductase PF00881.24 gi|212224159|ref|YP_002307395.1| - 1.2e-33 116.6 0.0 1.4e-33 116.4 0.0 1.1 1 0 0 1 1 1 1 Nitroreductase family TM1586_NiRdase PF14512.6 gi|212224159|ref|YP_002307395.1| - 1.7e-12 47.3 0.3 1e-05 25.3 0.0 2.8 2 1 0 2 2 2 2 Putative TM nitroreductase AAA_lid_9 PF17871.1 gi|212224159|ref|YP_002307395.1| - 0.082 12.8 0.2 0.19 11.6 0.2 1.8 1 1 0 1 1 1 0 AAA lid domain SpoOE-like PF09388.10 gi|212224159|ref|YP_002307395.1| - 0.47 10.4 5.0 0.68 9.9 1.6 2.3 1 1 1 2 2 2 0 Spo0E like sporulation regulatory protein Amdase PF17645.1 gi|212224160|ref|YP_002307396.1| - 3.5e-38 131.4 0.0 4.1e-38 131.2 0.0 1.0 1 0 0 1 1 1 1 Arylmalonate decarboxylase Asp_Glu_race PF01177.22 gi|212224160|ref|YP_002307396.1| - 4.1e-16 59.5 0.0 5.1e-16 59.2 0.0 1.1 1 0 0 1 1 1 1 Asp/Glu/Hydantoin racemase ADP_PFK_GK PF04587.15 gi|212224161|ref|YP_002307397.1| - 7.3e-111 370.7 0.0 8.4e-111 370.5 0.0 1.0 1 0 0 1 1 1 1 ADP-specific Phosphofructokinase/Glucokinase conserved region Phage_integrase PF00589.22 gi|212224162|ref|YP_002307398.1| - 5.2e-50 169.6 0.0 9.7e-50 168.7 0.0 1.4 2 0 0 2 2 2 1 Phage integrase family Phage_int_SAM_1 PF02899.17 gi|212224162|ref|YP_002307398.1| - 9e-09 35.5 3.6 2.8e-08 33.9 1.3 2.7 2 1 0 2 2 2 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_4 PF13495.6 gi|212224162|ref|YP_002307398.1| - 6.9e-07 29.6 0.1 2.8e-06 27.7 0.1 2.0 2 0 0 2 2 2 1 Phage integrase, N-terminal SAM-like domain Phage_integr_3 PF16795.5 gi|212224162|ref|YP_002307398.1| - 6.9e-05 22.8 0.5 0.41 10.6 0.1 2.3 2 0 0 2 2 2 2 Archaeal phage integrase Integrase_1 PF12835.7 gi|212224162|ref|YP_002307398.1| - 0.0034 17.5 0.0 0.0066 16.6 0.0 1.5 1 0 0 1 1 1 1 Integrase Toprim PF01751.22 gi|212224163|ref|YP_002307399.1| - 1.3e-08 35.0 0.7 8.3e-08 32.4 0.2 2.3 2 0 0 2 2 2 1 Toprim domain ZapB PF06005.12 gi|212224163|ref|YP_002307399.1| - 0.00075 19.9 1.0 0.0015 18.9 1.0 1.5 1 0 0 1 1 1 1 Cell division protein ZapB HALZ PF02183.18 gi|212224163|ref|YP_002307399.1| - 0.0011 19.2 5.7 0.027 14.7 0.9 2.7 1 1 1 2 2 2 2 Homeobox associated leucine zipper YabA PF06156.13 gi|212224163|ref|YP_002307399.1| - 0.0012 19.5 1.9 0.0019 18.8 0.5 1.9 1 1 1 2 2 2 1 Initiation control protein YabA DivIVA PF05103.13 gi|212224163|ref|YP_002307399.1| - 0.016 15.3 0.9 0.034 14.2 0.5 1.7 2 0 0 2 2 2 0 DivIVA protein GrpE PF01025.19 gi|212224163|ref|YP_002307399.1| - 0.017 14.8 1.1 0.18 11.5 0.5 2.2 2 0 0 2 2 2 0 GrpE Toprim_2 PF13155.6 gi|212224163|ref|YP_002307399.1| - 0.017 15.5 0.0 0.031 14.7 0.0 1.4 1 0 0 1 1 1 0 Toprim-like Mod_r PF07200.13 gi|212224163|ref|YP_002307399.1| - 0.032 14.3 1.2 0.056 13.6 1.2 1.4 1 0 0 1 1 1 0 Modifier of rudimentary (Mod(r)) protein SHE3 PF17078.5 gi|212224163|ref|YP_002307399.1| - 0.037 13.7 3.8 0.13 12.0 2.9 1.9 1 1 1 2 2 2 0 SWI5-dependent HO expression protein 3 GAS PF13851.6 gi|212224163|ref|YP_002307399.1| - 0.041 13.2 2.4 0.066 12.6 2.4 1.3 1 0 0 1 1 1 0 Growth-arrest specific micro-tubule binding PI3K_P85_iSH2 PF16454.5 gi|212224163|ref|YP_002307399.1| - 0.054 13.1 1.1 0.1 12.2 1.1 1.5 1 0 0 1 1 1 0 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain CENP-H PF05837.12 gi|212224163|ref|YP_002307399.1| - 0.06 13.8 0.0 0.21 12.0 0.0 1.9 2 0 0 2 2 2 0 Centromere protein H (CENP-H) JAKMIP_CC3 PF16034.5 gi|212224163|ref|YP_002307399.1| - 0.069 13.1 1.6 0.14 12.1 1.1 1.6 1 1 0 2 2 2 0 JAKMIP CC3 domain Spc7 PF08317.11 gi|212224163|ref|YP_002307399.1| - 0.087 11.7 0.6 0.11 11.3 0.6 1.2 1 0 0 1 1 1 0 Spc7 kinetochore protein rRNA_proc-arch PF13234.6 gi|212224163|ref|YP_002307399.1| - 0.1 12.5 0.0 0.14 12.0 0.0 1.3 1 0 0 1 1 1 0 rRNA-processing arch domain SfsA PF03749.13 gi|212224164|ref|YP_002307400.1| - 3.5e-36 124.1 0.0 4.4e-36 123.8 0.0 1.1 1 0 0 1 1 1 1 Sugar fermentation stimulation protein RE domain SfsA_N PF17746.1 gi|212224164|ref|YP_002307400.1| - 1.8e-12 47.3 0.0 3.3e-12 46.4 0.0 1.5 1 0 0 1 1 1 1 SfsA N-terminal OB domain HTH_1 PF00126.27 gi|212224165|ref|YP_002307401.1| - 1.5e-09 37.6 0.0 2.6e-09 36.9 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family HTH_10 PF04967.12 gi|212224165|ref|YP_002307401.1| - 0.0045 16.8 0.0 0.0089 15.8 0.0 1.5 1 0 0 1 1 1 1 HTH DNA binding domain Cas_NE0113 PF09623.10 gi|212224165|ref|YP_002307401.1| - 0.066 12.9 0.0 0.14 11.8 0.0 1.4 1 0 0 1 1 1 0 CRISPR-associated protein NE0113 (Cas_NE0113) HTH_30 PF13556.6 gi|212224165|ref|YP_002307401.1| - 0.085 12.7 0.0 0.23 11.3 0.0 1.7 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain DUF134 PF02001.16 gi|212224165|ref|YP_002307401.1| - 0.15 12.6 0.0 0.41 11.2 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function DUF134 HTH_Tnp_ISL3 PF13542.6 gi|212224165|ref|YP_002307401.1| - 0.16 11.4 0.0 0.45 10.0 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 Fer4_11 PF13247.6 gi|212224166|ref|YP_002307402.1| - 4.1e-25 87.8 11.4 4.1e-25 87.8 11.4 2.1 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|212224166|ref|YP_002307402.1| - 6e-16 57.5 37.2 1.8e-06 27.5 2.7 5.7 6 0 0 6 6 6 4 4Fe-4S binding domain Fer4_6 PF12837.7 gi|212224166|ref|YP_002307402.1| - 1.5e-14 53.3 35.3 7.4e-06 25.8 0.8 4.8 4 1 0 4 4 4 3 4Fe-4S binding domain Fer4_7 PF12838.7 gi|212224166|ref|YP_002307402.1| - 4.7e-13 49.5 30.5 5.2e-06 27.0 14.6 4.2 2 2 2 4 4 4 4 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|212224166|ref|YP_002307402.1| - 3.8e-12 45.5 32.2 9.9e-05 22.2 1.2 4.4 4 1 0 4 4 4 4 4Fe-4S binding domain Fer4_9 PF13187.6 gi|212224166|ref|YP_002307402.1| - 6.2e-11 42.3 26.0 4.6e-05 23.5 9.7 2.8 1 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|212224166|ref|YP_002307402.1| - 6.3e-11 42.2 30.3 2.8e-05 24.1 11.0 3.4 2 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|212224166|ref|YP_002307402.1| - 8.6e-08 33.0 28.9 0.34 11.9 6.2 5.0 3 1 2 5 5 5 4 4Fe-4S double cluster binding domain Fer4_4 PF12800.7 gi|212224166|ref|YP_002307402.1| - 1.1e-07 31.8 36.1 0.0051 17.2 4.2 5.1 5 0 0 5 5 5 2 4Fe-4S binding domain Fer4_3 PF12798.7 gi|212224166|ref|YP_002307402.1| - 3.2e-06 27.7 41.3 0.014 16.2 6.1 4.4 4 1 0 4 4 4 4 4Fe-4S binding domain Fer4_21 PF14697.6 gi|212224166|ref|YP_002307402.1| - 3.2e-05 24.0 27.6 0.00097 19.2 9.6 3.7 3 1 0 3 3 3 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|212224166|ref|YP_002307402.1| - 0.0052 17.3 29.8 0.23 12.0 0.8 4.4 3 2 0 3 3 3 1 4Fe-4S dicluster domain Fer4_20 PF14691.6 gi|212224166|ref|YP_002307402.1| - 0.029 14.2 25.5 0.15 11.8 4.3 4.1 2 1 2 4 4 4 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fe_dep_repr_C PF02742.15 gi|212224166|ref|YP_002307402.1| - 0.035 14.2 0.9 0.33 11.1 0.0 2.6 3 0 0 3 3 2 0 Iron dependent repressor, metal binding and dimerisation domain Fer4_8 PF13183.6 gi|212224166|ref|YP_002307402.1| - 0.66 10.5 32.9 0.58 10.6 3.4 4.1 2 2 3 5 5 5 0 4Fe-4S dicluster domain ETF_QO PF05187.13 gi|212224166|ref|YP_002307402.1| - 0.69 10.1 8.7 3.5 7.8 0.3 2.5 2 0 0 2 2 2 0 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S Fer4_15 PF13459.6 gi|212224166|ref|YP_002307402.1| - 2.7 8.8 23.4 4.5 8.1 0.3 4.0 3 1 0 3 3 3 0 4Fe-4S single cluster domain Prismane PF03063.20 gi|212224167|ref|YP_002307403.1| - 1.6e-173 578.1 5.4 1.9e-173 577.9 5.4 1.0 1 0 0 1 1 1 1 Prismane/CO dehydrogenase family HTH_26 PF13443.6 gi|212224167|ref|YP_002307403.1| - 0.036 14.5 0.1 16 6.0 0.0 3.1 3 0 0 3 3 3 0 Cro/C1-type HTH DNA-binding domain HTH_3 PF01381.22 gi|212224167|ref|YP_002307403.1| - 0.87 9.7 4.0 23 5.1 0.0 3.7 6 0 0 6 6 6 0 Helix-turn-helix CbiA PF01656.23 gi|212224168|ref|YP_002307404.1| - 2.3e-14 53.5 0.0 3.3e-14 53.0 0.0 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ArsA_ATPase PF02374.15 gi|212224168|ref|YP_002307404.1| - 4.1e-10 39.4 0.5 9.7e-09 34.8 0.0 2.2 2 0 0 2 2 2 1 Anion-transporting ATPase ParA PF10609.9 gi|212224168|ref|YP_002307404.1| - 4.5e-10 39.4 0.1 3.3e-07 30.0 0.1 2.1 2 0 0 2 2 2 2 NUBPL iron-transfer P-loop NTPase AAA_31 PF13614.6 gi|212224168|ref|YP_002307404.1| - 7e-10 39.1 0.3 2.5e-09 37.3 0.2 2.0 1 1 0 1 1 1 1 AAA domain CBP_BcsQ PF06564.12 gi|212224168|ref|YP_002307404.1| - 3.3e-07 30.0 0.0 0.0087 15.6 0.0 2.1 2 0 0 2 2 2 2 Cellulose biosynthesis protein BcsQ SRP54 PF00448.22 gi|212224168|ref|YP_002307404.1| - 3e-05 23.7 0.6 0.00016 21.4 0.5 2.0 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain Fer4_NifH PF00142.18 gi|212224168|ref|YP_002307404.1| - 0.00013 21.6 0.3 0.0021 17.5 0.1 2.1 2 0 0 2 2 2 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA_24 PF13479.6 gi|212224168|ref|YP_002307404.1| - 0.0034 17.1 0.0 0.0073 16.0 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|212224168|ref|YP_002307404.1| - 0.0036 17.7 0.0 0.0051 17.2 0.0 1.4 1 0 0 1 1 1 1 AAA ATPase domain NTPase_1 PF03266.15 gi|212224168|ref|YP_002307404.1| - 0.0041 17.1 0.1 0.034 14.0 0.0 2.1 2 0 0 2 2 2 1 NTPase APS_kinase PF01583.20 gi|212224168|ref|YP_002307404.1| - 0.011 15.6 0.0 0.021 14.7 0.0 1.4 1 0 0 1 1 1 0 Adenylylsulphate kinase Mur_ligase_M PF08245.12 gi|212224168|ref|YP_002307404.1| - 0.012 15.6 0.0 0.023 14.7 0.0 1.4 1 0 0 1 1 1 0 Mur ligase middle domain AAA_30 PF13604.6 gi|212224168|ref|YP_002307404.1| - 0.02 14.6 0.2 0.034 13.9 0.2 1.5 1 1 0 1 1 1 0 AAA domain Zeta_toxin PF06414.12 gi|212224168|ref|YP_002307404.1| - 0.034 13.4 0.1 0.057 12.7 0.1 1.3 1 0 0 1 1 1 0 Zeta toxin DUF87 PF01935.17 gi|212224168|ref|YP_002307404.1| - 0.043 13.9 2.9 0.055 13.6 1.3 1.9 2 0 0 2 2 2 0 Helicase HerA, central domain MipZ PF09140.11 gi|212224168|ref|YP_002307404.1| - 0.046 13.0 0.2 0.099 11.9 0.2 1.6 1 0 0 1 1 1 0 ATPase MipZ ATP_bind_1 PF03029.17 gi|212224168|ref|YP_002307404.1| - 0.048 13.4 0.0 0.069 12.9 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein CLP1_P PF16575.5 gi|212224168|ref|YP_002307404.1| - 0.051 13.4 0.1 0.51 10.1 0.1 2.2 2 0 0 2 2 2 0 mRNA cleavage and polyadenylation factor CLP1 P-loop AAA_25 PF13481.6 gi|212224168|ref|YP_002307404.1| - 0.066 12.8 0.2 0.15 11.6 0.2 1.5 1 0 0 1 1 1 0 AAA domain DUF2478 PF10649.9 gi|212224168|ref|YP_002307404.1| - 0.069 12.7 0.0 0.13 11.9 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2478) AAA_18 PF13238.6 gi|212224168|ref|YP_002307404.1| - 0.084 13.4 0.0 0.21 12.1 0.0 1.7 1 0 0 1 1 1 0 AAA domain T2SSE PF00437.20 gi|212224168|ref|YP_002307404.1| - 0.12 11.4 0.3 0.21 10.6 0.3 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein DUF1611 PF07755.11 gi|212224168|ref|YP_002307404.1| - 0.12 11.6 0.1 0.2 10.9 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1611_C) P-loop domain CooT PF10133.9 gi|212224169|ref|YP_002307405.1| - 8e-14 51.7 0.8 8.5e-14 51.6 0.8 1.0 1 0 0 1 1 1 1 CO dehydrogenase accessory protein CooT Proton_antipo_M PF00361.20 gi|212224170|ref|YP_002307406.1| - 6.9e-58 196.2 25.5 6.9e-58 196.2 25.5 2.8 4 1 0 4 4 4 1 Proton-conducting membrane transporter Proton_antipo_N PF00662.20 gi|212224170|ref|YP_002307406.1| - 0.0041 17.2 1.3 0.0041 17.2 1.3 3.6 3 0 0 3 3 3 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus BacteriocIIc_cy PF12173.8 gi|212224170|ref|YP_002307406.1| - 0.022 15.0 0.9 0.14 12.4 0.9 2.5 1 0 0 1 1 1 0 Bacteriocin class IIc cyclic gassericin A-like NADHdh PF00146.21 gi|212224171|ref|YP_002307407.1| - 5.3e-50 170.4 10.8 6.1e-50 170.2 10.8 1.0 1 0 0 1 1 1 1 NADH dehydrogenase Complex1_49kDa PF00346.19 gi|212224172|ref|YP_002307408.1| - 2.6e-66 223.5 0.1 8.2e-52 176.0 0.2 2.2 1 1 1 2 2 2 2 Respiratory-chain NADH dehydrogenase, 49 Kd subunit Complex1_30kDa PF00329.19 gi|212224172|ref|YP_002307408.1| - 4.3e-28 98.4 0.0 8.7e-28 97.4 0.0 1.5 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 30 Kd subunit NiFeSe_Hases PF00374.19 gi|212224172|ref|YP_002307408.1| - 7.6e-17 61.4 6.0 5e-16 58.7 0.2 3.1 2 1 0 2 2 2 2 Nickel-dependent hydrogenase DUF4726 PF15855.5 gi|212224172|ref|YP_002307408.1| - 0.051 13.8 0.0 0.1 12.8 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4726) Oxidored_q6 PF01058.22 gi|212224173|ref|YP_002307409.1| - 1e-20 73.9 0.4 1.4e-20 73.4 0.4 1.2 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit MrpF_PhaF PF04066.13 gi|212224174|ref|YP_002307410.1| - 5.8e-11 42.6 9.0 5.8e-11 42.6 9.0 2.0 2 0 0 2 2 2 1 Multiple resistance and pH regulation protein F (MrpF / PhaF) PhaG_MnhG_YufB PF03334.14 gi|212224175|ref|YP_002307411.1| - 5.7e-17 61.7 10.7 7.5e-17 61.3 10.7 1.2 1 0 0 1 1 1 1 Na+/H+ antiporter subunit DUF4040 PF13244.6 gi|212224176|ref|YP_002307412.1| - 2.6e-10 40.3 10.5 4.5e-10 39.5 10.5 1.4 1 1 0 1 1 1 1 Domain of unknown function (DUF4040) DUF2070 PF09843.9 gi|212224176|ref|YP_002307412.1| - 0.38 9.0 11.4 0.43 8.8 11.4 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) CreD PF06123.12 gi|212224176|ref|YP_002307412.1| - 1.3 7.7 8.7 1.6 7.5 8.7 1.0 1 0 0 1 1 1 0 Inner membrane protein CreD CPBP PF02517.16 gi|212224176|ref|YP_002307412.1| - 2.5 8.5 8.0 2 8.8 0.3 2.1 1 1 1 2 2 2 0 CPBP intramembrane metalloprotease DUF4191 PF13829.6 gi|212224176|ref|YP_002307412.1| - 6.7 6.0 6.5 6 6.1 5.8 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4191) MnhB PF04039.13 gi|212224177|ref|YP_002307413.1| - 3.5e-22 79.0 8.8 3.5e-22 79.0 8.8 2.0 2 1 0 2 2 2 1 Domain related to MnhB subunit of Na+/H+ antiporter DUF2106 PF09879.9 gi|212224177|ref|YP_002307413.1| - 0.024 14.2 0.1 0.024 14.2 0.1 1.8 2 0 0 2 2 2 0 Predicted membrane protein (DUF2106) NrsF PF06532.11 gi|212224177|ref|YP_002307413.1| - 0.033 13.9 0.9 0.033 13.9 0.9 1.9 2 0 0 2 2 2 0 Negative regulator of sigma F Oxidored_q2 PF00420.24 gi|212224178|ref|YP_002307414.1| - 2.9e-22 78.3 4.5 3.7e-22 77.9 4.5 1.1 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L UPF0016 PF01169.19 gi|212224178|ref|YP_002307414.1| - 0.083 13.2 3.1 3.4 8.1 0.0 2.5 3 0 0 3 3 3 0 Uncharacterized protein family UPF0016 MNHE PF01899.16 gi|212224179|ref|YP_002307415.1| - 5e-37 126.9 1.2 5.6e-37 126.7 1.2 1.0 1 0 0 1 1 1 1 Na+/H+ ion antiporter subunit Proton_antipo_M PF00361.20 gi|212224180|ref|YP_002307416.1| - 4.2e-60 203.4 23.6 4.2e-60 203.4 23.6 1.8 2 0 0 2 2 2 1 Proton-conducting membrane transporter Proton_antipo_N PF00662.20 gi|212224180|ref|YP_002307416.1| - 1.6e-07 31.3 0.3 1.1e-06 28.6 0.3 2.5 1 0 0 1 1 1 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Peptidase_M42 PF05343.14 gi|212224181|ref|YP_002307417.1| - 3.1e-111 371.1 0.2 3.6e-111 370.9 0.2 1.0 1 0 0 1 1 1 1 M42 glutamyl aminopeptidase Peptidase_M20 PF01546.28 gi|212224181|ref|YP_002307417.1| - 1.4e-09 38.0 0.1 2.6e-09 37.1 0.1 1.4 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 Peptidase_M28 PF04389.17 gi|212224181|ref|YP_002307417.1| - 0.00019 21.2 0.1 0.02 14.6 0.0 2.2 2 0 0 2 2 2 2 Peptidase family M28 Peptidase_M18 PF02127.15 gi|212224181|ref|YP_002307417.1| - 0.02 13.7 0.0 0.22 10.3 0.0 2.0 2 0 0 2 2 2 0 Aminopeptidase I zinc metalloprotease (M18) eIF2A PF08662.11 gi|212224183|ref|YP_002307419.1| - 0.1 12.4 0.2 0.23 11.3 0.0 1.6 2 0 0 2 2 2 0 Eukaryotic translation initiation factor eIF2A ABC2_membrane_4 PF12730.7 gi|212224184|ref|YP_002307420.1| - 6.1e-06 26.3 21.7 6.1e-06 26.3 21.7 1.9 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.7 gi|212224184|ref|YP_002307420.1| - 0.25 10.6 23.5 2.1 7.6 23.5 2.0 1 1 0 1 1 1 0 ABC-2 family transporter protein ABC_tran PF00005.27 gi|212224186|ref|YP_002307422.1| - 2.3e-21 76.7 0.0 2.9e-21 76.4 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|212224186|ref|YP_002307422.1| - 6.7e-09 36.0 1.3 0.00038 20.4 0.3 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|212224186|ref|YP_002307422.1| - 2.8e-08 33.5 0.2 0.0027 17.2 0.2 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|212224186|ref|YP_002307422.1| - 2.3e-05 25.0 0.2 3.8e-05 24.3 0.2 1.3 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|212224186|ref|YP_002307422.1| - 0.00047 19.8 0.1 0.00083 19.0 0.1 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain ABC_ATPase PF09818.9 gi|212224186|ref|YP_002307422.1| - 0.0012 17.8 0.1 0.0021 17.0 0.1 1.4 1 0 0 1 1 1 1 Predicted ATPase of the ABC class AAA_13 PF13166.6 gi|212224186|ref|YP_002307422.1| - 0.04 12.6 0.1 0.62 8.6 0.1 2.0 2 0 0 2 2 2 0 AAA domain AAA_15 PF13175.6 gi|212224186|ref|YP_002307422.1| - 0.045 13.5 0.3 0.072 12.8 0.3 1.2 1 0 0 1 1 1 0 AAA ATPase domain KdpD PF02702.17 gi|212224186|ref|YP_002307422.1| - 0.088 12.3 0.0 0.13 11.7 0.0 1.2 1 0 0 1 1 1 0 Osmosensitive K+ channel His kinase sensor domain AAA_30 PF13604.6 gi|212224186|ref|YP_002307422.1| - 0.19 11.4 0.1 0.31 10.8 0.1 1.3 1 0 0 1 1 1 0 AAA domain MutS_V PF00488.21 gi|212224186|ref|YP_002307422.1| - 0.23 11.5 0.1 0.38 10.8 0.1 1.3 1 0 0 1 1 1 0 MutS domain V HBB PF06777.11 gi|212224189|ref|YP_002307425.1| - 1.4e-67 227.1 0.1 2.8e-67 226.1 0.1 1.5 1 0 0 1 1 1 1 Helical and beta-bridge domain Helicase_C_2 PF13307.6 gi|212224189|ref|YP_002307425.1| - 1.9e-37 129.1 0.0 5.6e-37 127.5 0.0 1.8 2 0 0 2 2 2 1 Helicase C-terminal domain DEAD_2 PF06733.15 gi|212224189|ref|YP_002307425.1| - 3.1e-34 118.1 0.3 5.8e-34 117.2 0.3 1.4 1 0 0 1 1 1 1 DEAD_2 ResIII PF04851.15 gi|212224189|ref|YP_002307425.1| - 6.1e-11 42.6 0.0 1.4e-10 41.4 0.0 1.5 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit DEAD PF00270.29 gi|212224189|ref|YP_002307425.1| - 1.6e-07 31.3 0.0 9e-05 22.3 0.0 2.5 2 0 0 2 2 2 2 DEAD/DEAH box helicase AAA_30 PF13604.6 gi|212224189|ref|YP_002307425.1| - 0.0081 15.9 0.0 0.024 14.4 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA_19 PF13245.6 gi|212224189|ref|YP_002307425.1| - 0.0096 16.3 0.0 0.022 15.1 0.0 1.6 1 1 0 1 1 1 1 AAA domain SNF2_N PF00176.23 gi|212224189|ref|YP_002307425.1| - 0.019 13.7 0.0 0.089 11.5 0.0 1.8 1 1 0 1 1 1 0 SNF2 family N-terminal domain IstB_IS21 PF01695.17 gi|212224189|ref|YP_002307425.1| - 0.14 11.9 0.0 0.27 11.0 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein DUF835 PF05763.12 gi|212224190|ref|YP_002307426.1| - 4.5e-33 113.9 0.0 1.1e-32 112.7 0.0 1.6 2 0 0 2 2 2 1 Protein of unknown function (DUF835) TMEM171 PF15471.6 gi|212224190|ref|YP_002307426.1| - 0.085 11.8 0.3 0.12 11.3 0.3 1.1 1 0 0 1 1 1 0 Transmembrane protein family 171 Uma2 PF05685.12 gi|212224190|ref|YP_002307426.1| - 0.097 12.2 0.0 0.16 11.5 0.0 1.3 1 0 0 1 1 1 0 Putative restriction endonuclease DEAD PF00270.29 gi|212224191|ref|YP_002307427.1| - 9.6e-50 168.8 0.0 1.5e-49 168.1 0.0 1.3 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|212224191|ref|YP_002307427.1| - 1.6e-27 96.0 0.1 6.9e-26 90.8 0.1 2.6 3 0 0 3 3 3 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|212224191|ref|YP_002307427.1| - 1.6e-09 38.0 0.0 2.9e-09 37.2 0.0 1.4 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit AAA_30 PF13604.6 gi|212224191|ref|YP_002307427.1| - 0.00046 20.0 0.1 0.0014 18.4 0.0 1.8 2 1 0 2 2 2 1 AAA domain Phage_integrase PF00589.22 gi|212224191|ref|YP_002307427.1| - 0.015 15.1 0.0 0.026 14.3 0.0 1.3 1 0 0 1 1 1 0 Phage integrase family DUF2278 PF10042.9 gi|212224191|ref|YP_002307427.1| - 0.036 14.1 0.0 0.062 13.3 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2278) UvrA_inter PF17760.1 gi|212224191|ref|YP_002307427.1| - 0.051 13.7 0.1 0.54 10.4 0.0 2.5 2 1 0 2 2 2 0 UvrA interaction domain CMS1 PF14617.6 gi|212224191|ref|YP_002307427.1| - 0.069 12.5 0.0 0.14 11.5 0.0 1.4 1 0 0 1 1 1 0 U3-containing 90S pre-ribosomal complex subunit AAA_19 PF13245.6 gi|212224191|ref|YP_002307427.1| - 0.11 12.8 0.2 0.9 9.9 0.0 2.2 2 1 0 2 2 2 0 AAA domain Helicase_RecD PF05127.14 gi|212224191|ref|YP_002307427.1| - 0.12 12.2 0.0 0.26 11.1 0.0 1.6 1 0 0 1 1 1 0 Helicase DUF1499 PF07386.11 gi|212224191|ref|YP_002307427.1| - 0.12 12.9 0.0 0.34 11.5 0.0 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF1499) Flavi_DEAD PF07652.14 gi|212224191|ref|YP_002307427.1| - 0.14 12.1 0.0 0.57 10.1 0.0 2.0 2 0 0 2 2 2 0 Flavivirus DEAD domain AAA_22 PF13401.6 gi|212224191|ref|YP_002307427.1| - 0.36 11.1 1.2 1.8 8.8 0.4 2.7 2 1 0 2 2 2 0 AAA domain DUF553 PF04473.12 gi|212224192|ref|YP_002307428.1| - 3.4e-40 137.1 0.0 5.6e-40 136.4 0.0 1.4 1 0 0 1 1 1 1 Transglutaminase-like domain Rhomboid PF01694.22 gi|212224193|ref|YP_002307429.1| - 8e-27 94.1 22.9 8e-27 94.1 22.9 1.7 2 1 0 2 2 2 1 Rhomboid family DUF1751 PF08551.10 gi|212224193|ref|YP_002307429.1| - 0.00075 20.0 3.5 0.00075 20.0 3.5 2.1 2 1 0 2 2 2 1 Eukaryotic integral membrane protein (DUF1751) Inositol_P PF00459.25 gi|212224194|ref|YP_002307430.1| - 4e-37 128.2 0.0 8.2e-37 127.2 0.0 1.4 1 1 0 1 1 1 1 Inositol monophosphatase family FBPase PF00316.20 gi|212224194|ref|YP_002307430.1| - 4e-07 29.7 0.1 6e-07 29.1 0.1 1.2 1 0 0 1 1 1 1 Fructose-1-6-bisphosphatase, N-terminal domain DUF63 PF01889.17 gi|212224195|ref|YP_002307431.1| - 1.2e-84 284.8 12.9 1.3e-84 284.6 12.9 1.0 1 0 0 1 1 1 1 Membrane protein of unknown function DUF63 Atg8 PF02991.16 gi|212224195|ref|YP_002307431.1| - 0.16 12.1 0.1 0.31 11.3 0.1 1.4 1 0 0 1 1 1 0 Autophagy protein Atg8 ubiquitin like DUF1129 PF06570.11 gi|212224195|ref|YP_002307431.1| - 0.19 11.2 2.8 0.42 10.1 2.8 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1129) FeoB_associated PF12669.7 gi|212224195|ref|YP_002307431.1| - 3.6 8.1 10.2 1.5 9.3 1.6 2.9 3 0 0 3 3 3 0 FeoB-associated Cys-rich membrane protein Fe-ADH_2 PF13685.6 gi|212224196|ref|YP_002307432.1| - 4e-72 242.9 0.4 4.8e-72 242.7 0.4 1.1 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH PF00465.19 gi|212224196|ref|YP_002307432.1| - 2.2e-27 95.8 0.6 4.4e-26 91.6 0.6 2.0 1 1 0 1 1 1 1 Iron-containing alcohol dehydrogenase DHQ_synthase PF01761.20 gi|212224196|ref|YP_002307432.1| - 9.5e-11 41.3 0.2 4.3e-10 39.2 0.2 1.9 1 1 0 1 1 1 1 3-dehydroquinate synthase DDE_Tnp_1 PF01609.21 gi|212224196|ref|YP_002307432.1| - 0.15 11.7 0.0 0.21 11.2 0.0 1.2 1 0 0 1 1 1 0 Transposase DDE domain UPF0179 PF03684.13 gi|212224197|ref|YP_002307433.1| - 2.7e-42 144.0 0.0 3e-42 143.8 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0179) CT_A_B PF02626.15 gi|212224198|ref|YP_002307434.1| - 1.2e-87 293.9 0.0 1.4e-87 293.7 0.0 1.0 1 0 0 1 1 1 1 Carboxyltransferase domain, subdomain A and B CT_C_D PF02682.16 gi|212224199|ref|YP_002307435.1| - 3.6e-80 268.5 0.0 4.2e-80 268.2 0.0 1.0 1 0 0 1 1 1 1 Carboxyltransferase domain, subdomain C and D LamB_YcsF PF03746.16 gi|212224200|ref|YP_002307436.1| - 3.8e-106 354.1 0.0 4.2e-106 354.0 0.0 1.0 1 0 0 1 1 1 1 LamB/YcsF family Sigma70_r4_2 PF08281.12 gi|212224200|ref|YP_002307436.1| - 0.071 12.8 0.0 0.18 11.5 0.0 1.6 1 0 0 1 1 1 0 Sigma-70, region 4 PIN_6 PF17146.4 gi|212224201|ref|YP_002307437.1| - 2.1e-19 69.8 0.0 3e-19 69.3 0.0 1.2 1 0 0 1 1 1 1 PIN domain of ribonuclease PIN_5 PF08745.11 gi|212224201|ref|YP_002307437.1| - 1e-05 25.0 0.0 1.7e-05 24.3 0.0 1.3 1 0 0 1 1 1 1 PINc domain ribonuclease Zn-ribbon_8 PF09723.10 gi|212224201|ref|YP_002307437.1| - 0.00052 20.1 0.2 0.001 19.1 0.2 1.4 1 0 0 1 1 1 1 Zinc ribbon domain HypA PF01155.19 gi|212224201|ref|YP_002307437.1| - 0.00087 19.3 0.0 0.0015 18.5 0.0 1.4 1 1 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Prok-RING_1 PF14446.6 gi|212224201|ref|YP_002307437.1| - 0.0053 16.7 0.7 0.0082 16.1 0.7 1.2 1 0 0 1 1 1 1 Prokaryotic RING finger family 1 DZR PF12773.7 gi|212224201|ref|YP_002307437.1| - 0.028 14.4 0.1 0.046 13.8 0.1 1.3 1 0 0 1 1 1 0 Double zinc ribbon ADK_lid PF05191.14 gi|212224201|ref|YP_002307437.1| - 0.034 14.1 2.3 0.061 13.3 2.3 1.4 1 0 0 1 1 1 0 Adenylate kinase, active site lid TF_Zn_Ribbon PF08271.12 gi|212224201|ref|YP_002307437.1| - 0.044 13.3 0.6 7.1 6.2 0.2 2.4 2 0 0 2 2 2 0 TFIIB zinc-binding Sigma70_r4 PF04545.16 gi|212224201|ref|YP_002307437.1| - 0.049 13.2 0.5 0.1 12.1 0.1 1.8 2 0 0 2 2 2 0 Sigma-70, region 4 DNA_RNApol_7kD PF03604.13 gi|212224201|ref|YP_002307437.1| - 0.063 13.0 1.2 0.55 10.0 1.2 2.2 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit PIN_4 PF13638.6 gi|212224201|ref|YP_002307437.1| - 0.067 13.5 0.0 0.1 12.9 0.0 1.4 1 0 0 1 1 1 0 PIN domain zinc-ribbons_6 PF07191.12 gi|212224201|ref|YP_002307437.1| - 0.097 12.7 0.0 0.15 12.1 0.0 1.2 1 0 0 1 1 1 0 zinc-ribbons NOB1_Zn_bind PF08772.11 gi|212224201|ref|YP_002307437.1| - 0.11 12.7 0.2 0.18 12.0 0.2 1.3 1 0 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like Zn_ribbon_SprT PF17283.2 gi|212224201|ref|YP_002307437.1| - 0.12 12.3 5.3 1.2 9.1 0.3 2.3 2 0 0 2 2 2 0 SprT-like zinc ribbon domain ZapB PF06005.12 gi|212224202|ref|YP_002307438.1| - 0.00029 21.2 4.8 0.00088 19.7 3.2 2.1 2 0 0 2 2 2 1 Cell division protein ZapB Csm1_N PF18504.1 gi|212224202|ref|YP_002307438.1| - 0.0013 19.0 0.5 0.94 9.9 0.1 2.3 2 0 0 2 2 2 2 Csm1 N-terminal domain YabA PF06156.13 gi|212224202|ref|YP_002307438.1| - 0.0015 19.1 0.5 0.0027 18.3 0.5 1.4 1 0 0 1 1 1 1 Initiation control protein YabA Ribosomal_L29 PF00831.23 gi|212224202|ref|YP_002307438.1| - 0.0083 16.1 1.0 0.025 14.5 1.0 1.9 1 0 0 1 1 1 1 Ribosomal L29 protein DUF1456 PF07308.13 gi|212224202|ref|YP_002307438.1| - 0.014 15.8 0.2 0.1 12.9 0.2 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF1456) CENP-F_leu_zip PF10473.9 gi|212224202|ref|YP_002307438.1| - 0.017 15.1 4.3 0.058 13.4 4.3 1.7 1 1 0 1 1 1 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Uds1 PF15456.6 gi|212224202|ref|YP_002307438.1| - 0.026 14.7 0.1 0.048 13.8 0.1 1.4 1 0 0 1 1 1 0 Up-regulated During Septation Phage_GP20 PF06810.11 gi|212224202|ref|YP_002307438.1| - 0.068 13.0 0.2 0.11 12.3 0.2 1.3 1 0 0 1 1 1 0 Phage minor structural protein GP20 FlaC_arch PF05377.11 gi|212224202|ref|YP_002307438.1| - 0.095 13.1 2.5 0.2 12.0 0.9 2.4 2 1 1 3 3 3 0 Flagella accessory protein C (FlaC) JIP_LZII PF16471.5 gi|212224202|ref|YP_002307438.1| - 0.1 12.8 6.9 6.6 7.0 3.8 3.1 2 1 0 2 2 2 0 JNK-interacting protein leucine zipper II BRI3BP PF14965.6 gi|212224202|ref|YP_002307438.1| - 0.25 10.9 0.6 0.43 10.1 0.6 1.4 1 1 0 1 1 1 0 Negative regulator of p53/TP53 TSC22 PF01166.18 gi|212224202|ref|YP_002307438.1| - 0.43 10.9 7.2 0.55 10.6 2.6 2.7 2 1 1 3 3 3 0 TSC-22/dip/bun family bZIP_2 PF07716.15 gi|212224202|ref|YP_002307438.1| - 0.55 10.4 5.3 0.64 10.2 1.5 2.4 2 0 0 2 2 2 0 Basic region leucine zipper bZIP_1 PF00170.21 gi|212224202|ref|YP_002307438.1| - 1.6 8.9 8.3 2.1 8.5 3.0 2.9 2 1 2 4 4 4 0 bZIP transcription factor NYD-SP28_assoc PF14775.6 gi|212224203|ref|YP_002307439.1| - 0.0018 18.3 13.5 0.0046 17.0 9.9 2.7 2 1 1 3 3 3 1 Sperm tail C-terminal domain TCTP PF00838.17 gi|212224203|ref|YP_002307439.1| - 0.012 16.0 2.1 0.012 16.0 2.1 1.4 1 1 0 1 1 1 0 Translationally controlled tumour protein Prefoldin_2 PF01920.20 gi|212224203|ref|YP_002307439.1| - 0.014 15.3 6.7 0.014 15.3 6.7 2.2 1 1 1 2 2 2 0 Prefoldin subunit Med30 PF11315.8 gi|212224203|ref|YP_002307439.1| - 0.04 14.1 0.8 0.04 14.1 0.8 2.4 1 1 1 2 2 2 0 Mediator complex subunit 30 p31comet PF06581.12 gi|212224203|ref|YP_002307439.1| - 0.059 12.5 1.4 0.067 12.4 1.4 1.2 1 0 0 1 1 1 0 Mad1 and Cdc20-bound-Mad2 binding YabA PF06156.13 gi|212224203|ref|YP_002307439.1| - 0.085 13.5 12.5 0.092 13.4 11.1 1.8 1 1 1 2 2 2 0 Initiation control protein YabA FliD_C PF07195.12 gi|212224203|ref|YP_002307439.1| - 0.086 12.3 0.3 0.086 12.3 0.3 1.7 1 1 1 2 2 2 0 Flagellar hook-associated protein 2 C-terminus HAUS-augmin3 PF14932.6 gi|212224203|ref|YP_002307439.1| - 0.094 12.3 12.8 0.11 12.1 12.8 1.0 1 0 0 1 1 1 0 HAUS augmin-like complex subunit 3 DUF4298 PF14131.6 gi|212224203|ref|YP_002307439.1| - 0.1 12.5 4.7 0.074 13.0 2.2 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4298) DUF5344 PF17279.2 gi|212224203|ref|YP_002307439.1| - 0.12 13.0 4.0 0.23 12.1 2.2 2.3 1 1 1 2 2 2 0 Family of unknown function (DUF5344) DUF1877 PF08974.10 gi|212224203|ref|YP_002307439.1| - 0.12 12.4 7.4 0.037 14.1 3.3 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF1877) Prominin PF05478.11 gi|212224203|ref|YP_002307439.1| - 0.12 10.3 4.3 0.13 10.2 4.3 1.0 1 0 0 1 1 1 0 Prominin Dus PF01207.17 gi|212224203|ref|YP_002307439.1| - 0.27 10.3 4.1 0.3 10.1 4.1 1.0 1 0 0 1 1 1 0 Dihydrouridine synthase (Dus) Seryl_tRNA_N PF02403.22 gi|212224203|ref|YP_002307439.1| - 0.3 11.3 15.4 1.6 9.0 14.6 2.1 1 1 0 1 1 1 0 Seryl-tRNA synthetase N-terminal domain SPOUT_MTase PF02590.17 gi|212224203|ref|YP_002307439.1| - 0.38 10.7 6.2 0.53 10.3 6.2 1.2 1 0 0 1 1 1 0 Predicted SPOUT methyltransferase DUF87 PF01935.17 gi|212224203|ref|YP_002307439.1| - 0.4 10.7 6.9 0.47 10.5 6.9 1.0 1 0 0 1 1 1 0 Helicase HerA, central domain Atg14 PF10186.9 gi|212224203|ref|YP_002307439.1| - 0.64 9.1 10.5 0.67 9.0 10.5 1.1 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 OmpH PF03938.14 gi|212224203|ref|YP_002307439.1| - 0.88 9.9 17.2 2.4 8.5 17.2 1.7 1 1 0 1 1 1 0 Outer membrane protein (OmpH-like) UPF0242 PF06785.11 gi|212224203|ref|YP_002307439.1| - 1.1 9.4 17.4 1.9 8.6 17.4 1.4 1 1 0 1 1 1 0 Uncharacterised protein family (UPF0242) N-terminus FapA PF03961.13 gi|212224203|ref|YP_002307439.1| - 1.1 7.8 11.7 1.3 7.5 11.7 1.2 1 0 0 1 1 1 0 Flagellar Assembly Protein A Cep57_MT_bd PF06657.13 gi|212224203|ref|YP_002307439.1| - 1.2 9.6 14.9 1.1 9.7 13.0 1.8 1 1 1 2 2 2 0 Centrosome microtubule-binding domain of Cep57 APG6_N PF17675.1 gi|212224203|ref|YP_002307439.1| - 1.4 9.4 23.0 2.2 8.8 22.5 1.4 1 1 0 1 1 1 0 Apg6 coiled-coil region AAA_11 PF13086.6 gi|212224203|ref|YP_002307439.1| - 1.4 8.6 7.4 1.7 8.4 7.4 1.1 1 0 0 1 1 1 0 AAA domain V_ATPase_I PF01496.19 gi|212224203|ref|YP_002307439.1| - 1.5 6.7 6.8 1.5 6.6 6.8 1.0 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family TMPIT PF07851.13 gi|212224203|ref|YP_002307439.1| - 2 7.6 6.1 1.8 7.7 5.2 1.3 1 1 0 1 1 1 0 TMPIT-like protein Exonuc_VII_L PF02601.15 gi|212224203|ref|YP_002307439.1| - 2.5 7.6 6.9 2.7 7.5 6.9 1.0 1 0 0 1 1 1 0 Exonuclease VII, large subunit GBP_C PF02841.14 gi|212224203|ref|YP_002307439.1| - 2.5 7.4 15.8 3.1 7.1 15.8 1.2 1 0 0 1 1 1 0 Guanylate-binding protein, C-terminal domain zf-C4H2 PF10146.9 gi|212224203|ref|YP_002307439.1| - 3 8.1 11.5 3.5 7.9 11.5 1.1 1 0 0 1 1 1 0 Zinc finger-containing protein KfrA_N PF11740.8 gi|212224203|ref|YP_002307439.1| - 4.4 8.0 10.6 1.3 9.7 1.2 2.0 1 1 1 2 2 2 0 Plasmid replication region DNA-binding N-term kleA_kleC PF17383.2 gi|212224203|ref|YP_002307439.1| - 4.4 7.7 10.3 3.3 8.1 1.1 2.2 1 1 1 2 2 2 0 Uncharacterized KorC regulated protein A CCDC-167 PF15188.6 gi|212224203|ref|YP_002307439.1| - 5.7 7.4 24.9 1.6 9.2 9.7 2.5 1 1 1 2 2 2 0 Coiled-coil domain-containing protein 167 PV-1 PF06637.11 gi|212224203|ref|YP_002307439.1| - 6.1 5.5 17.5 10 4.8 17.4 1.5 1 1 0 1 1 1 0 PV-1 protein (PLVAP) ZapB PF06005.12 gi|212224203|ref|YP_002307439.1| - 8.1 7.0 23.4 1.9 9.0 10.8 2.3 1 1 1 2 2 2 0 Cell division protein ZapB GrpE PF01025.19 gi|212224203|ref|YP_002307439.1| - 8.7 6.0 19.1 88 2.7 19.1 2.3 1 1 0 1 1 1 0 GrpE Metal_resist PF13801.6 gi|212224203|ref|YP_002307439.1| - 8.8 6.5 10.4 20 5.4 8.9 1.9 1 1 0 1 1 1 0 Heavy-metal resistance HhH-GPD PF00730.25 gi|212224204|ref|YP_002307440.1| - 3.8e-12 46.6 0.0 6e-12 46.0 0.0 1.3 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein AFG1_ATPase PF03969.16 gi|212224204|ref|YP_002307440.1| - 0.062 12.2 0.0 0.09 11.6 0.0 1.2 1 0 0 1 1 1 0 AFG1-like ATPase DUF4423 PF14394.6 gi|212224205|ref|YP_002307441.1| - 0.044 13.5 0.0 0.045 13.5 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) GntR PF00392.21 gi|212224205|ref|YP_002307441.1| - 0.096 12.4 0.0 0.94 9.2 0.0 2.1 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family NfeD PF01957.18 gi|212224206|ref|YP_002307442.1| - 5.9e-22 77.9 1.3 3.9e-21 75.2 0.7 2.6 2 0 0 2 2 2 1 NfeD-like C-terminal, partner-binding CLP_protease PF00574.23 gi|212224206|ref|YP_002307442.1| - 3.8e-10 39.9 0.7 3.8e-10 39.9 0.7 2.1 2 0 0 2 2 2 1 Clp protease SDH_sah PF01972.16 gi|212224206|ref|YP_002307442.1| - 9.5e-05 21.5 0.8 0.00019 20.5 0.8 1.4 1 0 0 1 1 1 1 Serine dehydrogenase proteinase Peptidase_S49 PF01343.18 gi|212224206|ref|YP_002307442.1| - 0.021 14.7 0.4 0.048 13.6 0.4 1.6 1 0 0 1 1 1 0 Peptidase family S49 PucR PF07905.11 gi|212224206|ref|YP_002307442.1| - 0.057 13.7 0.0 0.12 12.7 0.0 1.5 1 0 0 1 1 1 0 Purine catabolism regulatory protein-like family Conotoxin PF02950.17 gi|212224206|ref|YP_002307442.1| - 0.11 13.6 0.2 0.11 13.6 0.2 2.4 3 0 0 3 3 3 0 Conotoxin Ac76 PF05814.11 gi|212224206|ref|YP_002307442.1| - 4.4 7.4 5.0 56 3.9 0.2 3.2 3 0 0 3 3 3 0 Orf76 (Ac76) Band_7 PF01145.25 gi|212224207|ref|YP_002307443.1| - 1.9e-37 129.0 5.0 3e-37 128.3 5.0 1.3 1 0 0 1 1 1 1 SPFH domain / Band 7 family Band_7_1 PF13421.6 gi|212224207|ref|YP_002307443.1| - 9.8e-05 22.2 1.2 0.00039 20.2 0.4 2.3 2 1 0 2 2 2 1 SPFH domain-Band 7 family CbiA PF01656.23 gi|212224208|ref|YP_002307444.1| - 2.5e-24 85.8 0.3 3.7e-24 85.2 0.3 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|212224208|ref|YP_002307444.1| - 1.7e-22 80.2 0.1 2.6e-22 79.6 0.1 1.3 1 0 0 1 1 1 1 AAA domain ParA PF10609.9 gi|212224208|ref|YP_002307444.1| - 5.5e-20 71.9 4.3 2.5e-19 69.7 4.3 2.0 1 1 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase Fer4_NifH PF00142.18 gi|212224208|ref|YP_002307444.1| - 1.8e-12 47.3 0.6 4e-07 29.7 0.1 2.1 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family CBP_BcsQ PF06564.12 gi|212224208|ref|YP_002307444.1| - 1.5e-10 41.0 0.0 3.3e-10 39.9 0.0 1.5 1 1 0 1 1 1 1 Cellulose biosynthesis protein BcsQ MipZ PF09140.11 gi|212224208|ref|YP_002307444.1| - 1.5e-08 34.3 0.4 2.6e-07 30.2 0.4 2.1 1 1 0 1 1 1 1 ATPase MipZ ArsA_ATPase PF02374.15 gi|212224208|ref|YP_002307444.1| - 2.7e-07 30.1 0.6 7e-07 28.7 0.1 1.8 2 0 0 2 2 2 1 Anion-transporting ATPase AAA_26 PF13500.6 gi|212224208|ref|YP_002307444.1| - 2e-05 24.5 1.0 2e-05 24.5 1.0 2.3 2 1 0 2 2 2 1 AAA domain VirC1 PF07015.11 gi|212224208|ref|YP_002307444.1| - 0.00023 20.5 0.2 0.0005 19.4 0.2 1.5 1 0 0 1 1 1 1 VirC1 protein SRP54 PF00448.22 gi|212224208|ref|YP_002307444.1| - 0.0031 17.1 0.5 0.0085 15.7 0.4 1.7 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain AAA_30 PF13604.6 gi|212224208|ref|YP_002307444.1| - 0.0043 16.8 0.1 0.0068 16.1 0.1 1.4 1 0 0 1 1 1 1 AAA domain APS_kinase PF01583.20 gi|212224208|ref|YP_002307444.1| - 0.01 15.7 0.1 0.02 14.8 0.1 1.4 1 0 0 1 1 1 0 Adenylylsulphate kinase AAA_25 PF13481.6 gi|212224208|ref|YP_002307444.1| - 0.047 13.3 1.5 0.18 11.4 1.5 1.9 1 1 0 1 1 1 0 AAA domain PhoH PF02562.16 gi|212224208|ref|YP_002307444.1| - 0.088 12.3 0.2 0.18 11.2 0.2 1.5 1 0 0 1 1 1 0 PhoH-like protein CLP1_P PF16575.5 gi|212224208|ref|YP_002307444.1| - 0.11 12.2 0.1 0.22 11.3 0.1 1.4 1 0 0 1 1 1 0 mRNA cleavage and polyadenylation factor CLP1 P-loop AAA_33 PF13671.6 gi|212224208|ref|YP_002307444.1| - 0.16 12.1 0.0 0.31 11.2 0.0 1.6 1 1 0 1 1 1 0 AAA domain AAA_6 PF12774.7 gi|212224208|ref|YP_002307444.1| - 0.2 10.6 0.1 0.36 9.7 0.1 1.4 1 0 0 1 1 1 0 Hydrolytic ATP binding site of dynein motor region Ac76 PF05814.11 gi|212224209|ref|YP_002307445.1| - 0.018 15.1 0.4 0.021 14.8 0.4 1.2 1 0 0 1 1 1 0 Orf76 (Ac76) MLANA PF14991.6 gi|212224209|ref|YP_002307445.1| - 0.046 14.0 0.0 0.048 13.9 0.0 1.1 1 0 0 1 1 1 0 Protein melan-A 7TMR-DISM_7TM PF07695.11 gi|212224209|ref|YP_002307445.1| - 0.35 10.7 7.4 0.43 10.5 7.4 1.0 1 0 0 1 1 1 0 7TM diverse intracellular signalling PspB PF06667.12 gi|212224209|ref|YP_002307445.1| - 0.8 9.8 5.3 3.1 7.9 5.3 2.1 1 1 0 1 1 1 0 Phage shock protein B PYNP_C PF07831.13 gi|212224211|ref|YP_002307447.1| - 6.2e-16 57.8 0.1 2e-15 56.2 0.1 1.9 1 0 0 1 1 1 1 Pyrimidine nucleoside phosphorylase C-terminal domain Glycos_transf_3 PF00591.21 gi|212224211|ref|YP_002307447.1| - 7e-16 58.6 0.8 1.5e-15 57.5 0.8 1.5 1 1 0 1 1 1 1 Glycosyl transferase family, a/b domain Glycos_trans_3N PF02885.17 gi|212224211|ref|YP_002307447.1| - 1.1e-15 57.3 0.6 5.5e-15 55.0 0.4 2.3 2 0 0 2 2 2 1 Glycosyl transferase family, helical bundle domain DUF2254 PF10011.9 gi|212224211|ref|YP_002307447.1| - 1e-06 27.8 0.0 1.6e-06 27.2 0.0 1.2 1 0 0 1 1 1 1 Predicted membrane protein (DUF2254) CDC48_N PF02359.18 gi|212224211|ref|YP_002307447.1| - 0.00077 19.6 0.0 0.0035 17.5 0.0 2.1 1 0 0 1 1 1 1 Cell division protein 48 (CDC48), N-terminal domain Biotin_lipoyl PF00364.22 gi|212224211|ref|YP_002307447.1| - 0.0029 17.4 0.0 0.024 14.4 0.0 2.4 2 0 0 2 2 2 1 Biotin-requiring enzyme Biotin_lipoyl_2 PF13533.6 gi|212224211|ref|YP_002307447.1| - 0.011 15.6 0.0 0.033 14.0 0.0 1.8 2 0 0 2 2 2 0 Biotin-lipoyl like Molydop_binding PF01568.21 gi|212224211|ref|YP_002307447.1| - 0.048 13.7 0.0 0.098 12.7 0.0 1.5 1 0 0 1 1 1 0 Molydopterin dinucleotide binding domain HlyD_D23 PF16576.5 gi|212224211|ref|YP_002307447.1| - 0.053 12.7 0.0 0.4 9.9 0.0 2.1 1 1 1 2 2 2 0 Barrel-sandwich domain of CusB or HlyD membrane-fusion FeoA PF04023.14 gi|212224211|ref|YP_002307447.1| - 0.09 13.0 0.4 0.9 9.8 0.1 2.5 2 0 0 2 2 2 0 FeoA domain DUF2095 PF09868.9 gi|212224212|ref|YP_002307448.1| - 2.8e-67 224.6 4.5 3.1e-67 224.4 4.5 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2095) Ins_allergen_rp PF06757.13 gi|212224212|ref|YP_002307448.1| - 0.16 12.0 0.0 0.24 11.4 0.0 1.4 1 1 0 1 1 1 0 Insect allergen related repeat, nitrile-specifier detoxification DUF123 PF01986.16 gi|212224213|ref|YP_002307449.1| - 1.5e-21 76.7 0.0 2.1e-21 76.2 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF123 GIY-YIG PF01541.24 gi|212224213|ref|YP_002307449.1| - 0.0013 19.0 0.2 0.0023 18.1 0.2 1.5 1 0 0 1 1 1 1 GIY-YIG catalytic domain PcrB PF01884.17 gi|212224214|ref|YP_002307450.1| - 1.1e-67 227.8 0.0 1.4e-67 227.4 0.0 1.0 1 0 0 1 1 1 1 PcrB family His_biosynth PF00977.21 gi|212224214|ref|YP_002307450.1| - 2e-08 34.0 0.1 2.2e-07 30.6 0.0 2.0 2 0 0 2 2 2 1 Histidine biosynthesis protein ThiG PF05690.14 gi|212224214|ref|YP_002307450.1| - 3.6e-08 33.0 1.3 1.3e-05 24.7 0.2 2.1 2 0 0 2 2 2 2 Thiazole biosynthesis protein ThiG Trp_syntA PF00290.20 gi|212224214|ref|YP_002307450.1| - 7e-07 28.4 0.3 3.8e-05 22.7 0.3 2.1 2 0 0 2 2 2 1 Tryptophan synthase alpha chain IMPDH PF00478.25 gi|212224214|ref|YP_002307450.1| - 9.6e-06 24.8 0.4 0.0014 17.7 0.2 2.1 2 0 0 2 2 2 2 IMP dehydrogenase / GMP reductase domain G3P_antiterm PF04309.12 gi|212224214|ref|YP_002307450.1| - 2.9e-05 23.6 2.5 3.8e-05 23.2 0.4 2.1 3 0 0 3 3 3 1 Glycerol-3-phosphate responsive antiterminator NanE PF04131.14 gi|212224214|ref|YP_002307450.1| - 5.2e-05 22.5 0.7 0.0064 15.7 0.1 2.2 2 0 0 2 2 2 1 Putative N-acetylmannosamine-6-phosphate epimerase Dus PF01207.17 gi|212224214|ref|YP_002307450.1| - 6.4e-05 22.2 0.1 0.093 11.8 0.0 2.2 2 0 0 2 2 2 2 Dihydrouridine synthase (Dus) DHO_dh PF01180.21 gi|212224214|ref|YP_002307450.1| - 0.00085 18.6 0.2 0.0034 16.6 0.1 1.8 2 0 0 2 2 2 1 Dihydroorotate dehydrogenase BtpA PF03437.15 gi|212224214|ref|YP_002307450.1| - 0.00088 18.8 0.3 0.019 14.4 0.1 2.1 2 0 0 2 2 2 1 BtpA family Usp PF00582.26 gi|212224214|ref|YP_002307450.1| - 0.0018 18.8 0.2 0.95 10.0 0.1 2.2 2 0 0 2 2 2 2 Universal stress protein family NMO PF03060.15 gi|212224214|ref|YP_002307450.1| - 0.0019 17.6 4.4 0.0021 17.5 1.0 2.0 2 0 0 2 2 2 1 Nitronate monooxygenase TMP-TENI PF02581.17 gi|212224214|ref|YP_002307450.1| - 0.011 15.1 0.5 0.021 14.2 0.2 1.6 2 0 0 2 2 2 0 Thiamine monophosphate synthase Ribul_P_3_epim PF00834.19 gi|212224214|ref|YP_002307450.1| - 0.019 14.3 0.5 0.037 13.4 0.5 1.4 1 0 0 1 1 1 0 Ribulose-phosphate 3 epimerase family FMN_dh PF01070.18 gi|212224214|ref|YP_002307450.1| - 0.035 13.1 0.5 0.1 11.6 0.1 1.8 2 0 0 2 2 2 0 FMN-dependent dehydrogenase DUF561 PF04481.12 gi|212224214|ref|YP_002307450.1| - 0.036 13.2 0.3 0.13 11.4 0.2 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF561) OMPdecase PF00215.24 gi|212224214|ref|YP_002307450.1| - 0.037 13.6 0.1 0.063 12.9 0.1 1.4 1 0 0 1 1 1 0 Orotidine 5'-phosphate decarboxylase / HUMPS family PEP_hydrolase PF09370.10 gi|212224214|ref|YP_002307450.1| - 0.049 12.8 0.4 0.15 11.3 0.1 1.8 2 0 0 2 2 2 0 Phosphoenolpyruvate hydrolase-like Peptidase_M55 PF04951.13 gi|212224216|ref|YP_002307452.1| - 1e-84 284.0 0.0 1.2e-84 283.9 0.0 1.0 1 0 0 1 1 1 1 D-aminopeptidase MCR_C PF04609.12 gi|212224216|ref|YP_002307452.1| - 0.14 11.2 0.0 0.2 10.7 0.0 1.2 1 0 0 1 1 1 0 Methyl-coenzyme M reductase operon protein C Hormone_1 PF00103.20 gi|212224216|ref|YP_002307452.1| - 0.18 11.6 0.0 0.33 10.7 0.0 1.5 1 0 0 1 1 1 0 Somatotropin hormone family ERCC4 PF02732.15 gi|212224218|ref|YP_002307454.1| - 2.1e-29 102.7 0.0 8e-29 100.9 0.0 2.0 2 0 0 2 2 2 1 ERCC4 domain Helicase_C PF00271.31 gi|212224218|ref|YP_002307454.1| - 4.5e-28 97.8 0.1 2e-24 86.1 0.0 2.9 2 1 0 2 2 2 2 Helicase conserved C-terminal domain DEAD PF00270.29 gi|212224218|ref|YP_002307454.1| - 4.4e-20 72.2 0.1 1.9e-19 70.1 0.0 2.0 2 0 0 2 2 2 1 DEAD/DEAH box helicase ResIII PF04851.15 gi|212224218|ref|YP_002307454.1| - 2e-19 70.2 0.0 2.7e-18 66.5 0.0 2.5 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit HHH_2 PF12826.7 gi|212224218|ref|YP_002307454.1| - 5.4e-11 42.4 0.1 2e-10 40.6 0.0 2.0 2 0 0 2 2 1 1 Helix-hairpin-helix motif HHH PF00633.23 gi|212224218|ref|YP_002307454.1| - 3.7e-08 32.8 0.1 1.1e-07 31.4 0.1 1.9 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_5 PF14520.6 gi|212224218|ref|YP_002307454.1| - 3.3e-07 30.8 0.2 1.3e-06 28.9 0.0 2.2 2 0 0 2 2 1 1 Helix-hairpin-helix domain HHH_3 PF12836.7 gi|212224218|ref|YP_002307454.1| - 0.0011 19.1 0.2 0.012 15.8 0.0 2.9 3 0 0 3 3 3 1 Helix-hairpin-helix motif SWI2_SNF2 PF18766.1 gi|212224218|ref|YP_002307454.1| - 0.0037 17.0 0.0 0.023 14.3 0.0 2.1 2 0 0 2 2 2 1 SWI2/SNF2 ATPase SecA_DEAD PF07517.14 gi|212224218|ref|YP_002307454.1| - 0.019 14.3 0.0 0.042 13.1 0.0 1.7 1 1 0 1 1 1 0 SecA DEAD-like domain AAA_30 PF13604.6 gi|212224218|ref|YP_002307454.1| - 0.12 12.1 0.0 0.34 10.6 0.0 1.8 1 0 0 1 1 1 0 AAA domain 5_3_exonuc PF01367.20 gi|212224218|ref|YP_002307454.1| - 0.43 11.2 2.6 1.5 9.5 0.0 3.0 2 1 0 2 2 2 0 5'-3' exonuclease, C-terminal SAM fold DUF2913 PF11140.8 gi|212224219|ref|YP_002307455.1| - 0.19 11.5 0.0 0.27 10.9 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2913) DUF3203 PF11462.8 gi|212224219|ref|YP_002307455.1| - 0.2 11.9 0.0 0.37 11.0 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3203) SelB-wing_2 PF09106.11 gi|212224219|ref|YP_002307455.1| - 0.21 11.8 1.8 0.33 11.2 0.6 1.8 2 0 0 2 2 2 0 Elongation factor SelB, winged helix SMC_ScpA PF02616.14 gi|212224220|ref|YP_002307456.1| - 9.2e-19 68.3 8.6 9.1e-13 48.7 8.5 2.1 1 1 1 2 2 2 2 Segregation and condensation protein ScpA Rad21_Rec8 PF04824.16 gi|212224220|ref|YP_002307456.1| - 0.0002 20.6 0.0 0.00039 19.6 0.0 1.4 1 0 0 1 1 1 1 Conserved region of Rad21 / Rec8 like protein CNDH2_C PF16858.5 gi|212224220|ref|YP_002307456.1| - 0.0045 16.9 0.1 0.045 13.6 0.0 2.1 1 1 1 2 2 2 1 Condensin II complex subunit CAP-H2 or CNDH2, C-term DUF4470 PF14737.6 gi|212224220|ref|YP_002307456.1| - 0.0084 16.3 0.1 0.23 11.7 0.0 2.3 2 0 0 2 2 2 1 Domain of unknown function (DUF4470) AAA_19 PF13245.6 gi|212224220|ref|YP_002307456.1| - 0.044 14.1 0.3 0.065 13.6 0.3 1.2 1 0 0 1 1 1 0 AAA domain SMC_N PF02463.19 gi|212224221|ref|YP_002307457.1| - 5.6e-72 241.7 33.0 3e-71 239.4 33.0 2.6 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain SMC_hinge PF06470.13 gi|212224221|ref|YP_002307457.1| - 2.8e-33 114.7 0.4 2.1e-32 111.9 0.0 2.7 2 0 0 2 2 2 1 SMC proteins Flexible Hinge Domain AAA_21 PF13304.6 gi|212224221|ref|YP_002307457.1| - 2e-15 57.4 1.2 6.2e-11 42.6 0.5 4.2 3 1 0 4 4 4 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 gi|212224221|ref|YP_002307457.1| - 1.6e-13 51.2 56.6 1.9e-12 47.6 4.5 4.3 2 2 1 3 3 2 2 AAA ATPase domain APG6_N PF17675.1 gi|212224221|ref|YP_002307457.1| - 1.2e-08 35.5 164.5 0.00022 21.7 25.2 9.8 2 2 5 8 8 8 5 Apg6 coiled-coil region Spc7 PF08317.11 gi|212224221|ref|YP_002307457.1| - 2.3e-08 33.3 150.2 0.00053 19.0 27.2 8.2 2 2 7 9 9 9 5 Spc7 kinetochore protein MscS_porin PF12795.7 gi|212224221|ref|YP_002307457.1| - 3.6e-08 33.3 93.1 3.8e-06 26.6 6.5 6.8 2 2 5 7 7 7 4 Mechanosensitive ion channel porin domain CENP-F_leu_zip PF10473.9 gi|212224221|ref|YP_002307457.1| - 2.4e-06 27.6 49.2 3.3e-05 23.9 28.6 8.5 3 2 5 8 8 6 4 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 AAA_29 PF13555.6 gi|212224221|ref|YP_002307457.1| - 2.3e-05 24.1 0.1 5e-05 22.9 0.1 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain CALCOCO1 PF07888.11 gi|212224221|ref|YP_002307457.1| - 0.00013 21.0 59.5 0.00013 21.0 59.5 4.4 2 2 2 4 4 3 2 Calcium binding and coiled-coil domain (CALCOCO1) like SHE3 PF17078.5 gi|212224221|ref|YP_002307457.1| - 0.00021 21.1 9.0 0.00021 21.1 9.0 7.1 2 2 4 7 7 6 1 SWI5-dependent HO expression protein 3 GAS PF13851.6 gi|212224221|ref|YP_002307457.1| - 0.00047 19.6 51.4 0.00078 18.9 27.7 8.7 3 2 6 9 9 8 5 Growth-arrest specific micro-tubule binding Lectin_N PF03954.14 gi|212224221|ref|YP_002307457.1| - 0.00051 19.8 3.3 0.00051 19.8 3.3 6.9 4 3 2 6 6 6 1 Hepatic lectin, N-terminal domain AAA_13 PF13166.6 gi|212224221|ref|YP_002307457.1| - 0.00052 18.8 33.5 0.00052 18.8 33.5 6.9 4 2 4 8 8 8 4 AAA domain ATG16 PF08614.11 gi|212224221|ref|YP_002307457.1| - 0.00092 19.5 138.5 0.14 12.4 21.6 8.9 2 2 5 7 7 6 4 Autophagy protein 16 (ATG16) Atg14 PF10186.9 gi|212224221|ref|YP_002307457.1| - 0.0025 16.9 11.4 0.0025 16.9 11.4 7.3 2 2 5 7 7 7 2 Vacuolar sorting 38 and autophagy-related subunit 14 Snapin_Pallidin PF14712.6 gi|212224221|ref|YP_002307457.1| - 0.0042 17.5 7.0 0.0042 17.5 7.0 8.9 5 3 4 9 9 8 1 Snapin/Pallidin ZapB PF06005.12 gi|212224221|ref|YP_002307457.1| - 0.0056 17.1 14.6 0.0056 17.1 14.6 13.3 7 5 3 10 10 7 4 Cell division protein ZapB AAA_23 PF13476.6 gi|212224221|ref|YP_002307457.1| - 0.0087 16.6 146.3 0.037 14.5 54.3 8.4 2 2 0 2 2 1 1 AAA domain Flagellin_C PF00700.21 gi|212224221|ref|YP_002307457.1| - 0.0095 16.3 0.5 0.0095 16.3 0.5 6.2 8 0 0 8 8 6 1 Bacterial flagellin C-terminal helical region ADIP PF11559.8 gi|212224221|ref|YP_002307457.1| - 0.0098 16.0 9.3 0.0098 16.0 9.3 9.2 2 2 6 9 9 8 3 Afadin- and alpha -actinin-Binding TMF_TATA_bd PF12325.8 gi|212224221|ref|YP_002307457.1| - 0.011 16.0 11.2 0.011 16.0 11.2 10.6 2 2 7 10 10 9 0 TATA element modulatory factor 1 TATA binding DUF4407 PF14362.6 gi|212224221|ref|YP_002307457.1| - 0.029 13.7 83.3 0.027 13.8 12.4 6.3 2 2 4 6 6 6 0 Domain of unknown function (DUF4407) Baculo_PEP_C PF04513.12 gi|212224221|ref|YP_002307457.1| - 0.042 13.9 38.6 0.037 14.1 2.8 7.7 2 2 5 8 8 8 0 Baculovirus polyhedron envelope protein, PEP, C terminus DUF1664 PF07889.12 gi|212224221|ref|YP_002307457.1| - 0.093 12.8 88.0 0.13 12.3 5.9 10.1 2 2 9 11 11 11 0 Protein of unknown function (DUF1664) TolA_bind_tri PF16331.5 gi|212224221|ref|YP_002307457.1| - 0.14 12.2 0.1 0.14 12.2 0.1 8.9 3 2 5 9 9 9 0 TolA binding protein trimerisation DUF3584 PF12128.8 gi|212224221|ref|YP_002307457.1| - 0.4 8.1 115.6 0.011 13.3 40.8 3.9 3 2 0 3 3 3 0 Protein of unknown function (DUF3584) EzrA PF06160.12 gi|212224221|ref|YP_002307457.1| - 1 7.5 123.5 0.22 9.6 15.8 6.2 2 2 0 3 3 3 0 Septation ring formation regulator, EzrA Filament PF00038.21 gi|212224221|ref|YP_002307457.1| - 1.7 8.2 133.2 0.0054 16.4 50.8 5.2 2 2 2 4 4 3 0 Intermediate filament protein Bacillus_HBL PF05791.11 gi|212224221|ref|YP_002307457.1| - 3.9 7.3 60.9 0.073 12.9 3.9 7.6 2 2 4 8 8 8 0 Bacillus haemolytic enterotoxin (HBL) TPR_MLP1_2 PF07926.12 gi|212224221|ref|YP_002307457.1| - 8.2 6.5 146.2 0.051 13.6 20.6 9.9 5 3 6 11 11 10 0 TPR/MLP1/MLP2-like protein DUF835 PF05763.12 gi|212224222|ref|YP_002307458.1| - 7.3e-21 74.3 0.1 8.5e-21 74.1 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF835) MIT_C PF16565.5 gi|212224222|ref|YP_002307458.1| - 0.09 12.8 0.0 0.095 12.7 0.0 1.1 1 0 0 1 1 1 0 Phospholipase D-like domain at C-terminus of MIT Glyoxalase_4 PF13669.6 gi|212224223|ref|YP_002307459.1| - 9.4e-25 87.0 0.0 1.1e-24 86.8 0.0 1.0 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase PF00903.25 gi|212224223|ref|YP_002307459.1| - 1.2e-12 48.1 0.0 1.3e-12 48.0 0.0 1.0 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_3 PF13468.6 gi|212224223|ref|YP_002307459.1| - 7.8e-11 42.4 0.0 8.8e-11 42.2 0.0 1.0 1 0 0 1 1 1 1 Glyoxalase-like domain MeaB PF03308.16 gi|212224223|ref|YP_002307459.1| - 0.019 13.9 0.2 0.092 11.7 0.1 1.8 1 1 1 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB Osmo_CC PF08946.10 gi|212224223|ref|YP_002307459.1| - 0.44 10.8 2.4 0.69 10.2 0.1 2.4 2 1 0 2 2 2 0 Osmosensory transporter coiled coil MeaB PF03308.16 gi|212224224|ref|YP_002307460.1| - 2.1e-102 341.7 2.1 2.5e-102 341.4 2.1 1.0 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB cobW PF02492.19 gi|212224224|ref|YP_002307460.1| - 2.5e-08 33.7 2.2 1.3e-07 31.4 2.2 2.1 1 1 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain ATP_bind_1 PF03029.17 gi|212224224|ref|YP_002307460.1| - 4.5e-05 23.4 0.0 0.0008 19.3 0.0 2.1 2 0 0 2 2 2 1 Conserved hypothetical ATP binding protein NTPase_1 PF03266.15 gi|212224224|ref|YP_002307460.1| - 7e-05 22.8 1.5 0.0001 22.3 0.2 2.0 3 0 0 3 3 1 1 NTPase AAA_30 PF13604.6 gi|212224224|ref|YP_002307460.1| - 9.2e-05 22.2 0.0 0.00024 20.9 0.0 1.7 1 0 0 1 1 1 1 AAA domain SRP54 PF00448.22 gi|212224224|ref|YP_002307460.1| - 9.5e-05 22.1 0.1 0.00046 19.9 0.1 2.0 1 1 0 1 1 1 1 SRP54-type protein, GTPase domain ABC_tran PF00005.27 gi|212224224|ref|YP_002307460.1| - 0.00017 22.1 0.1 0.00033 21.2 0.1 1.5 1 0 0 1 1 1 1 ABC transporter GTP_EFTU PF00009.27 gi|212224224|ref|YP_002307460.1| - 0.00029 20.4 0.0 0.0042 16.7 0.0 2.2 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain AAA_22 PF13401.6 gi|212224224|ref|YP_002307460.1| - 0.00037 20.8 0.0 0.00099 19.4 0.0 1.7 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|212224224|ref|YP_002307460.1| - 0.00066 20.2 1.2 0.008 16.7 0.0 2.7 2 1 1 3 3 3 1 AAA domain AAA_29 PF13555.6 gi|212224224|ref|YP_002307460.1| - 0.0007 19.3 0.0 0.0015 18.2 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain MMR_HSR1 PF01926.23 gi|212224224|ref|YP_002307460.1| - 0.0019 18.3 0.2 0.011 15.9 0.2 2.3 1 1 0 1 1 1 1 50S ribosome-binding GTPase MobB PF03205.14 gi|212224224|ref|YP_002307460.1| - 0.0023 17.8 0.2 0.0088 15.9 0.0 2.1 3 0 0 3 3 2 1 Molybdopterin guanine dinucleotide synthesis protein B RsgA_GTPase PF03193.16 gi|212224224|ref|YP_002307460.1| - 0.0024 17.8 0.0 0.049 13.5 0.0 2.3 2 0 0 2 2 2 1 RsgA GTPase AAA_16 PF13191.6 gi|212224224|ref|YP_002307460.1| - 0.0027 18.1 0.0 0.0058 17.0 0.0 1.5 1 0 0 1 1 1 1 AAA ATPase domain KAP_NTPase PF07693.14 gi|212224224|ref|YP_002307460.1| - 0.0029 16.9 0.0 0.0031 16.8 0.0 1.4 1 1 0 1 1 1 1 KAP family P-loop domain Zeta_toxin PF06414.12 gi|212224224|ref|YP_002307460.1| - 0.011 15.0 0.0 0.02 14.2 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin AAA_19 PF13245.6 gi|212224224|ref|YP_002307460.1| - 0.012 15.9 0.3 0.038 14.3 0.1 1.9 2 0 0 2 2 2 0 AAA domain TrwB_AAD_bind PF10412.9 gi|212224224|ref|YP_002307460.1| - 0.014 14.3 0.0 0.023 13.6 0.0 1.3 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain NB-ARC PF00931.22 gi|212224224|ref|YP_002307460.1| - 0.014 14.6 0.0 0.026 13.7 0.0 1.4 1 0 0 1 1 1 0 NB-ARC domain AAA_23 PF13476.6 gi|212224224|ref|YP_002307460.1| - 0.021 15.3 0.5 0.074 13.5 0.1 1.9 2 0 0 2 2 2 0 AAA domain ATPase_2 PF01637.18 gi|212224224|ref|YP_002307460.1| - 0.026 14.4 0.2 0.065 13.1 0.0 1.7 2 0 0 2 2 2 0 ATPase domain predominantly from Archaea T2SSE PF00437.20 gi|212224224|ref|YP_002307460.1| - 0.033 13.3 1.1 0.53 9.3 0.0 2.1 2 0 0 2 2 2 0 Type II/IV secretion system protein DAP3 PF10236.9 gi|212224224|ref|YP_002307460.1| - 0.039 13.1 0.0 0.18 11.0 0.0 1.9 2 0 0 2 2 2 0 Mitochondrial ribosomal death-associated protein 3 AAA_33 PF13671.6 gi|212224224|ref|YP_002307460.1| - 0.045 13.9 0.0 0.12 12.5 0.0 1.7 1 0 0 1 1 1 0 AAA domain SpoVIF PF14069.6 gi|212224224|ref|YP_002307460.1| - 0.05 13.4 0.2 0.4 10.5 0.1 2.2 2 0 0 2 2 2 0 Stage VI sporulation protein F AAA_14 PF13173.6 gi|212224224|ref|YP_002307460.1| - 0.054 13.5 0.0 0.35 10.9 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_17 PF13207.6 gi|212224224|ref|YP_002307460.1| - 0.063 13.7 1.3 0.19 12.2 0.0 2.3 2 0 0 2 2 2 0 AAA domain NACHT PF05729.12 gi|212224224|ref|YP_002307460.1| - 0.064 13.2 0.0 0.13 12.2 0.0 1.5 1 0 0 1 1 1 0 NACHT domain CbiA PF01656.23 gi|212224224|ref|YP_002307460.1| - 0.073 13.1 0.0 0.12 12.5 0.0 1.5 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_25 PF13481.6 gi|212224224|ref|YP_002307460.1| - 0.078 12.5 0.1 1.7 8.1 0.1 2.4 1 1 1 2 2 2 0 AAA domain AAA_28 PF13521.6 gi|212224224|ref|YP_002307460.1| - 0.079 13.2 0.1 0.2 11.9 0.1 1.7 1 0 0 1 1 1 0 AAA domain AAA_24 PF13479.6 gi|212224224|ref|YP_002307460.1| - 0.084 12.6 0.0 0.29 10.8 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_11 PF13086.6 gi|212224224|ref|YP_002307460.1| - 0.15 11.8 0.1 0.35 10.6 0.0 1.6 2 0 0 2 2 2 0 AAA domain RNA_helicase PF00910.22 gi|212224224|ref|YP_002307460.1| - 0.2 12.0 0.0 0.5 10.8 0.0 1.7 1 0 0 1 1 1 0 RNA helicase B12-binding PF02310.19 gi|212224225|ref|YP_002307461.1| - 7.2e-23 80.9 0.4 8.9e-23 80.6 0.4 1.1 1 0 0 1 1 1 1 B12 binding domain DUF1611_N PF17396.2 gi|212224225|ref|YP_002307461.1| - 0.012 15.8 0.1 0.022 15.0 0.1 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF1611_N) Rossmann-like domain MoCF_biosynth PF00994.24 gi|212224225|ref|YP_002307461.1| - 0.017 14.8 0.4 0.13 11.9 0.1 2.1 1 1 1 2 2 2 0 Probable molybdopterin binding domain DpaA_N PF16924.5 gi|212224225|ref|YP_002307461.1| - 0.061 13.4 0.0 0.11 12.6 0.0 1.4 1 1 0 1 1 1 0 Dipicolinate synthase subunit A N-terminal domain LytR_C PF13399.6 gi|212224225|ref|YP_002307461.1| - 0.13 13.3 0.0 0.29 12.1 0.0 1.8 1 1 0 1 1 1 0 LytR cell envelope-related transcriptional attenuator PHP PF02811.19 gi|212224226|ref|YP_002307462.1| - 1e-08 35.7 0.0 2.1e-08 34.6 0.0 1.5 1 1 0 1 1 1 1 PHP domain PHP_C PF13263.6 gi|212224226|ref|YP_002307462.1| - 0.00046 19.9 0.0 0.0068 16.1 0.0 2.4 2 0 0 2 2 2 1 PHP-associated TatD_DNase PF01026.21 gi|212224226|ref|YP_002307462.1| - 0.0042 16.5 0.0 0.0061 16.0 0.0 1.2 1 0 0 1 1 1 1 TatD related DNase Maf PF02545.14 gi|212224227|ref|YP_002307463.1| - 1.9e-57 193.8 0.0 2.2e-57 193.5 0.0 1.0 1 0 0 1 1 1 1 Maf-like protein DUF2964 PF11177.8 gi|212224228|ref|YP_002307464.1| - 0.016 15.4 1.4 0.019 15.1 1.4 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2964) DUF2530 PF10745.9 gi|212224228|ref|YP_002307464.1| - 0.41 10.9 2.8 0.27 11.5 1.3 1.6 1 1 1 2 2 2 0 Protein of unknown function (DUF2530) T2SSE PF00437.20 gi|212224229|ref|YP_002307465.1| - 2e-09 36.9 0.1 4.5e-09 35.8 0.1 1.6 1 0 0 1 1 1 1 Type II/IV secretion system protein PIN_9 PF18477.1 gi|212224229|ref|YP_002307465.1| - 0.00011 22.5 1.3 0.03 14.6 1.3 3.3 1 1 0 1 1 1 1 PIN like domain KH_1 PF00013.29 gi|212224229|ref|YP_002307465.1| - 0.00032 20.4 0.5 0.0008 19.2 0.5 1.7 1 0 0 1 1 1 1 KH domain AAA_18 PF13238.6 gi|212224229|ref|YP_002307465.1| - 0.0015 19.1 0.1 0.012 16.1 0.0 2.6 3 0 0 3 3 2 1 AAA domain IstB_IS21 PF01695.17 gi|212224229|ref|YP_002307465.1| - 0.002 17.9 0.0 0.0045 16.7 0.0 1.5 1 0 0 1 1 1 1 IstB-like ATP binding protein PIN_4 PF13638.6 gi|212224229|ref|YP_002307465.1| - 0.0023 18.2 0.0 0.0053 17.0 0.0 1.6 1 0 0 1 1 1 1 PIN domain AAA_25 PF13481.6 gi|212224229|ref|YP_002307465.1| - 0.0037 16.9 0.0 0.0089 15.6 0.0 1.7 1 0 0 1 1 1 1 AAA domain KH_2 PF07650.17 gi|212224229|ref|YP_002307465.1| - 0.0048 16.7 8.8 0.0099 15.7 4.1 3.4 2 1 0 2 2 2 1 KH domain Thymidylate_kin PF02223.17 gi|212224229|ref|YP_002307465.1| - 0.0089 15.7 0.0 0.037 13.7 0.0 2.1 1 1 1 2 2 2 1 Thymidylate kinase AAA_16 PF13191.6 gi|212224229|ref|YP_002307465.1| - 0.018 15.4 0.0 0.085 13.2 0.0 2.1 2 0 0 2 2 2 0 AAA ATPase domain AAA_22 PF13401.6 gi|212224229|ref|YP_002307465.1| - 0.038 14.3 0.0 0.22 11.8 0.0 2.3 2 0 0 2 2 2 0 AAA domain AAA_28 PF13521.6 gi|212224229|ref|YP_002307465.1| - 0.049 13.9 0.0 0.16 12.2 0.0 1.9 1 0 0 1 1 1 0 AAA domain AAA_5 PF07728.14 gi|212224229|ref|YP_002307465.1| - 0.052 13.5 0.0 0.16 11.9 0.0 1.9 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_14 PF13173.6 gi|212224229|ref|YP_002307465.1| - 0.054 13.5 0.1 0.33 11.0 0.0 2.3 2 0 0 2 2 2 0 AAA domain DnaB_C PF03796.15 gi|212224229|ref|YP_002307465.1| - 0.056 12.8 0.0 0.13 11.6 0.0 1.6 1 0 0 1 1 1 0 DnaB-like helicase C terminal domain NACHT PF05729.12 gi|212224229|ref|YP_002307465.1| - 0.06 13.3 0.1 0.13 12.1 0.1 1.5 1 0 0 1 1 1 0 NACHT domain RuvB_N PF05496.12 gi|212224229|ref|YP_002307465.1| - 0.072 12.8 0.0 0.2 11.4 0.0 1.7 1 0 0 1 1 1 0 Holliday junction DNA helicase RuvB P-loop domain AAA PF00004.29 gi|212224229|ref|YP_002307465.1| - 0.073 13.5 0.0 0.21 12.0 0.0 1.8 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) RNA_helicase PF00910.22 gi|212224229|ref|YP_002307465.1| - 0.13 12.6 0.0 0.25 11.7 0.0 1.5 1 0 0 1 1 1 0 RNA helicase ABC_tran PF00005.27 gi|212224229|ref|YP_002307465.1| - 0.14 12.7 0.0 0.48 10.9 0.0 1.9 1 0 0 1 1 1 0 ABC transporter TsaE PF02367.17 gi|212224229|ref|YP_002307465.1| - 0.15 12.0 0.0 0.4 10.7 0.0 1.6 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE ATP_bind_1 PF03029.17 gi|212224229|ref|YP_002307465.1| - 0.18 11.6 0.1 0.51 10.1 0.0 1.8 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein AAA_31 PF13614.6 gi|212224230|ref|YP_002307466.1| - 8.1e-28 97.5 0.3 1.2e-27 96.9 0.3 1.3 1 0 0 1 1 1 1 AAA domain CbiA PF01656.23 gi|212224230|ref|YP_002307466.1| - 2.5e-23 82.6 0.0 4.5e-23 81.7 0.0 1.4 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.9 gi|212224230|ref|YP_002307466.1| - 6.5e-23 81.5 3.5 1.8e-21 76.7 3.5 2.6 1 1 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase CBP_BcsQ PF06564.12 gi|212224230|ref|YP_002307466.1| - 1.4e-15 57.4 0.0 3.1e-15 56.3 0.0 1.5 1 1 0 1 1 1 1 Cellulose biosynthesis protein BcsQ Fer4_NifH PF00142.18 gi|212224230|ref|YP_002307466.1| - 2.1e-15 56.9 0.4 5e-07 29.4 0.0 2.1 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family MipZ PF09140.11 gi|212224230|ref|YP_002307466.1| - 6.9e-09 35.4 0.3 2.3e-08 33.7 0.3 1.7 1 1 0 1 1 1 1 ATPase MipZ AAA_26 PF13500.6 gi|212224230|ref|YP_002307466.1| - 2.1e-05 24.5 1.4 8.1e-05 22.5 1.4 2.0 1 1 0 1 1 1 1 AAA domain ArsA_ATPase PF02374.15 gi|212224230|ref|YP_002307466.1| - 4.9e-05 22.7 1.8 0.0014 17.8 0.4 2.8 2 1 1 3 3 3 1 Anion-transporting ATPase AAA_30 PF13604.6 gi|212224230|ref|YP_002307466.1| - 0.00091 19.0 0.2 0.0013 18.5 0.2 1.3 1 0 0 1 1 1 1 AAA domain SRP54 PF00448.22 gi|212224230|ref|YP_002307466.1| - 0.0023 17.6 1.5 0.055 13.1 0.8 2.2 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain AAA_24 PF13479.6 gi|212224230|ref|YP_002307466.1| - 0.026 14.3 0.1 0.062 13.0 0.1 1.6 1 1 0 1 1 1 0 AAA domain VirC1 PF07015.11 gi|212224230|ref|YP_002307466.1| - 0.037 13.3 0.2 0.069 12.4 0.2 1.5 1 0 0 1 1 1 0 VirC1 protein APS_kinase PF01583.20 gi|212224230|ref|YP_002307466.1| - 0.076 12.9 0.3 0.2 11.5 0.2 1.7 1 1 1 2 2 2 0 Adenylylsulphate kinase AAA_6 PF12774.7 gi|212224230|ref|YP_002307466.1| - 0.11 11.4 0.3 0.19 10.7 0.3 1.3 1 0 0 1 1 1 0 Hydrolytic ATP binding site of dynein motor region AAA_25 PF13481.6 gi|212224230|ref|YP_002307466.1| - 0.12 12.0 1.6 0.62 9.6 1.6 2.0 1 1 0 1 1 1 0 AAA domain Helicase_RecD PF05127.14 gi|212224230|ref|YP_002307466.1| - 0.15 11.9 0.1 0.45 10.4 0.1 1.7 1 1 0 1 1 1 0 Helicase ATP_bind_1 PF03029.17 gi|212224231|ref|YP_002307467.1| - 7.2e-52 176.6 0.0 8.1e-52 176.4 0.0 1.0 1 0 0 1 1 1 1 Conserved hypothetical ATP binding protein SRP54 PF00448.22 gi|212224231|ref|YP_002307467.1| - 7.5e-06 25.7 0.3 9.1e-05 22.2 0.1 2.0 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain CbiA PF01656.23 gi|212224231|ref|YP_002307467.1| - 0.0002 21.4 0.0 0.00023 21.2 0.0 1.3 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain MeaB PF03308.16 gi|212224231|ref|YP_002307467.1| - 0.0012 17.9 0.0 0.0064 15.5 0.0 2.0 2 1 0 2 2 2 1 Methylmalonyl Co-A mutase-associated GTPase MeaB MobB PF03205.14 gi|212224231|ref|YP_002307467.1| - 0.0028 17.5 0.0 0.0046 16.8 0.0 1.3 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B GTP_EFTU PF00009.27 gi|212224231|ref|YP_002307467.1| - 0.0033 17.0 0.0 2.3 7.7 0.0 2.7 3 0 0 3 3 3 1 Elongation factor Tu GTP binding domain AAA_24 PF13479.6 gi|212224231|ref|YP_002307467.1| - 0.006 16.3 0.0 0.01 15.6 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|212224231|ref|YP_002307467.1| - 0.0089 16.4 0.0 0.014 15.8 0.0 1.3 1 0 0 1 1 1 1 AAA ATPase domain APS_kinase PF01583.20 gi|212224231|ref|YP_002307467.1| - 0.012 15.6 0.0 0.016 15.1 0.0 1.2 1 0 0 1 1 1 0 Adenylylsulphate kinase IstB_IS21 PF01695.17 gi|212224231|ref|YP_002307467.1| - 0.024 14.4 0.0 0.048 13.4 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_31 PF13614.6 gi|212224231|ref|YP_002307467.1| - 0.035 14.0 0.3 1.4 8.8 0.1 2.1 2 0 0 2 2 2 0 AAA domain AAA_18 PF13238.6 gi|212224231|ref|YP_002307467.1| - 0.044 14.3 0.1 0.071 13.7 0.1 1.5 1 1 0 1 1 1 0 AAA domain CLP1_P PF16575.5 gi|212224231|ref|YP_002307467.1| - 0.049 13.4 0.0 0.11 12.3 0.0 1.5 2 0 0 2 2 2 0 mRNA cleavage and polyadenylation factor CLP1 P-loop AAA_14 PF13173.6 gi|212224231|ref|YP_002307467.1| - 0.05 13.6 0.0 0.13 12.3 0.0 1.7 2 0 0 2 2 1 0 AAA domain AAA_30 PF13604.6 gi|212224231|ref|YP_002307467.1| - 0.086 12.6 0.1 0.12 12.0 0.1 1.2 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.6 gi|212224231|ref|YP_002307467.1| - 0.092 12.9 0.0 0.13 12.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain NTPase_1 PF03266.15 gi|212224231|ref|YP_002307467.1| - 0.12 12.3 0.1 0.53 10.2 0.1 1.9 1 1 0 1 1 1 0 NTPase KTI12 PF08433.10 gi|212224231|ref|YP_002307467.1| - 0.14 11.6 0.0 0.19 11.1 0.0 1.2 1 0 0 1 1 1 0 Chromatin associated protein KTI12 NB-ARC PF00931.22 gi|212224231|ref|YP_002307467.1| - 0.16 11.1 0.1 0.23 10.6 0.1 1.2 1 0 0 1 1 1 0 NB-ARC domain RsgA_GTPase PF03193.16 gi|212224231|ref|YP_002307467.1| - 0.19 11.6 0.1 22 4.9 0.0 3.3 4 0 0 4 4 4 0 RsgA GTPase MipZ PF09140.11 gi|212224231|ref|YP_002307467.1| - 0.24 10.7 0.0 1.8 7.8 0.0 2.0 1 1 0 1 1 1 0 ATPase MipZ Asn_synthase PF00733.21 gi|212224232|ref|YP_002307468.1| - 2e-56 192.2 0.2 1.2e-33 117.3 0.0 2.2 1 1 1 2 2 2 2 Asparagine synthase GATase_7 PF13537.6 gi|212224232|ref|YP_002307468.1| - 3.1e-25 88.5 0.0 5.2e-25 87.7 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_6 PF13522.6 gi|212224232|ref|YP_002307468.1| - 8e-23 81.1 0.0 1.6e-22 80.1 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase domain QueC PF06508.13 gi|212224232|ref|YP_002307468.1| - 0.034 13.6 0.0 0.056 12.9 0.0 1.4 1 0 0 1 1 1 0 Queuosine biosynthesis protein QueC Phage_int_SAM_5 PF13102.6 gi|212224232|ref|YP_002307468.1| - 0.18 12.2 0.0 0.44 10.9 0.0 1.6 1 0 0 1 1 1 0 Phage integrase SAM-like domain CW_binding_2 PF04122.12 gi|212224233|ref|YP_002307469.1| - 6.5e-07 29.9 0.2 0.0053 17.4 0.0 2.5 2 0 0 2 2 2 2 Putative cell wall binding repeat 2 FdtA PF05523.11 gi|212224233|ref|YP_002307469.1| - 0.054 13.2 0.2 0.34 10.6 0.1 2.3 1 1 1 2 2 2 0 WxcM-like, C-terminal DUF1732 PF08340.11 gi|212224233|ref|YP_002307469.1| - 0.074 13.0 0.1 0.16 12.0 0.1 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF1732) ChAPs PF09295.10 gi|212224233|ref|YP_002307469.1| - 0.076 12.0 0.1 0.21 10.5 0.0 1.6 2 0 0 2 2 2 0 ChAPs (Chs5p-Arf1p-binding proteins) Glyco_transf_4 PF13439.6 gi|212224234|ref|YP_002307470.1| - 2.5e-30 105.7 1.9 3.7e-30 105.2 1.9 1.3 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glycos_transf_1 PF00534.20 gi|212224234|ref|YP_002307470.1| - 2e-24 86.1 0.0 8e-24 84.1 0.0 1.9 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|212224234|ref|YP_002307470.1| - 5.6e-24 85.1 0.0 4.4e-22 79.0 0.0 2.4 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.6 gi|212224234|ref|YP_002307470.1| - 1.5e-22 80.8 0.3 2.2e-22 80.2 0.3 1.3 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_4_2 PF13477.6 gi|212224234|ref|YP_002307470.1| - 3.1e-15 56.4 0.0 4.3e-15 56.0 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glyco_trans_1_2 PF13524.6 gi|212224234|ref|YP_002307470.1| - 8.2e-08 32.5 0.0 1.5e-07 31.7 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 DUF3492 PF11997.8 gi|212224234|ref|YP_002307470.1| - 0.0018 18.1 0.2 0.33 10.7 0.2 2.5 2 0 0 2 2 2 1 Domain of unknown function (DUF3492) Glyco_transf_5 PF08323.11 gi|212224234|ref|YP_002307470.1| - 0.0036 17.0 0.4 0.13 12.0 0.1 2.5 1 1 1 2 2 2 1 Starch synthase catalytic domain GrpB PF04229.14 gi|212224234|ref|YP_002307470.1| - 0.039 14.2 0.0 0.062 13.5 0.0 1.4 1 0 0 1 1 1 0 GrpB protein TPD52 PF04201.15 gi|212224234|ref|YP_002307470.1| - 0.22 11.1 0.0 0.38 10.4 0.0 1.3 1 0 0 1 1 1 0 Tumour protein D52 family Sua5_yciO_yrdC PF01300.18 gi|212224235|ref|YP_002307471.1| - 2e-61 206.6 0.0 8.2e-61 204.6 0.0 1.8 2 0 0 2 2 2 1 Telomere recombination SUA5 PF03481.13 gi|212224235|ref|YP_002307471.1| - 4e-36 124.5 0.1 1.7e-35 122.5 0.1 1.8 2 0 0 2 2 2 1 Putative GTP-binding controlling metal-binding Isochorismatase PF00857.20 gi|212224235|ref|YP_002307471.1| - 0.031 14.4 0.2 0.83 9.8 0.0 2.2 2 0 0 2 2 2 0 Isochorismatase family SNAP PF14938.6 gi|212224236|ref|YP_002307472.1| - 7.6e-08 32.1 13.1 0.00013 21.5 3.4 3.5 3 1 0 3 3 3 2 Soluble NSF attachment protein, SNAP TPR_12 PF13424.6 gi|212224236|ref|YP_002307472.1| - 0.00013 22.2 13.9 0.63 10.4 0.5 5.8 6 0 0 6 6 6 1 Tetratricopeptide repeat RPN7 PF10602.9 gi|212224236|ref|YP_002307472.1| - 0.00038 20.2 11.0 0.2 11.3 0.1 4.2 2 1 1 3 3 3 2 26S proteasome subunit RPN7 TPR_10 PF13374.6 gi|212224236|ref|YP_002307472.1| - 0.0019 18.0 3.2 2.5 8.1 0.2 4.0 3 1 0 3 3 3 2 Tetratricopeptide repeat TPR_MalT PF17874.1 gi|212224236|ref|YP_002307472.1| - 0.003 17.0 0.2 0.61 9.4 0.0 3.0 2 1 1 3 3 3 1 MalT-like TPR region TPR_14 PF13428.6 gi|212224236|ref|YP_002307472.1| - 0.0079 16.9 8.7 3.8 8.6 0.0 6.2 5 1 1 6 6 6 1 Tetratricopeptide repeat TPR_1 PF00515.28 gi|212224236|ref|YP_002307472.1| - 0.0093 15.7 19.9 0.53 10.2 0.4 5.9 6 0 0 6 6 6 3 Tetratricopeptide repeat DUF627 PF04781.12 gi|212224236|ref|YP_002307472.1| - 0.057 13.4 1.4 1.8 8.6 0.0 3.1 3 0 0 3 3 3 0 Protein of unknown function (DUF627) TPR_8 PF13181.6 gi|212224236|ref|YP_002307472.1| - 0.085 13.1 23.9 0.85 10.0 0.8 7.1 7 1 0 7 7 7 0 Tetratricopeptide repeat VWA_2 PF13519.6 gi|212224236|ref|YP_002307472.1| - 0.13 12.9 0.0 1.2 9.8 0.0 2.4 2 1 0 2 2 2 0 von Willebrand factor type A domain TPR_2 PF07719.17 gi|212224236|ref|YP_002307472.1| - 0.55 10.5 30.6 0.16 12.1 0.6 7.0 7 1 2 9 9 9 0 Tetratricopeptide repeat TPR_7 PF13176.6 gi|212224236|ref|YP_002307472.1| - 0.95 9.6 11.3 15 5.8 0.0 5.9 5 1 1 6 6 6 0 Tetratricopeptide repeat TPR_11 PF13414.6 gi|212224236|ref|YP_002307472.1| - 1.2 8.9 11.2 1.3 8.7 0.0 4.4 5 0 0 5 5 5 0 TPR repeat YfdX PF10938.8 gi|212224236|ref|YP_002307472.1| - 2.5 8.0 5.8 38 4.2 0.1 3.8 3 1 1 4 4 4 0 YfdX protein TPR_6 PF13174.6 gi|212224236|ref|YP_002307472.1| - 3.2 8.6 12.1 35 5.3 0.0 6.0 5 1 0 5 5 5 0 Tetratricopeptide repeat TPR_16 PF13432.6 gi|212224236|ref|YP_002307472.1| - 4.6 8.0 15.7 25 5.6 0.2 5.5 6 0 0 6 6 6 0 Tetratricopeptide repeat NTP_transf_2 PF01909.23 gi|212224238|ref|YP_002307474.1| - 3e-09 37.1 0.4 4e-08 33.4 0.4 2.2 1 1 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|212224238|ref|YP_002307474.1| - 2e-05 24.6 0.0 6.6e-05 22.9 0.0 1.9 2 0 0 2 2 2 1 Polymerase beta, Nucleotidyltransferase DUF4269 PF14091.6 gi|212224238|ref|YP_002307474.1| - 0.0019 18.5 0.0 0.0036 17.6 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4269) tRNA-synt_2b PF00587.25 gi|212224239|ref|YP_002307475.1| - 1e-39 136.4 0.0 1.8e-39 135.6 0.0 1.4 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) Seryl_tRNA_N PF02403.22 gi|212224239|ref|YP_002307475.1| - 2.2e-28 98.6 7.3 4.2e-28 97.7 7.3 1.5 1 0 0 1 1 1 1 Seryl-tRNA synthetase N-terminal domain DUF2408 PF10303.9 gi|212224239|ref|YP_002307475.1| - 0.051 14.1 1.0 0.12 12.9 1.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2408) GAS PF13851.6 gi|212224239|ref|YP_002307475.1| - 0.058 12.8 5.2 0.12 11.8 5.2 1.4 1 0 0 1 1 1 0 Growth-arrest specific micro-tubule binding Syntaxin_2 PF14523.6 gi|212224239|ref|YP_002307475.1| - 0.064 13.6 0.2 0.15 12.5 0.2 1.6 1 0 0 1 1 1 0 Syntaxin-like protein BLOC1_2 PF10046.9 gi|212224239|ref|YP_002307475.1| - 0.081 13.2 2.0 0.2 12.0 2.0 1.6 1 0 0 1 1 1 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 TPR_MLP1_2 PF07926.12 gi|212224239|ref|YP_002307475.1| - 0.13 12.3 3.8 0.29 11.2 3.8 1.5 1 0 0 1 1 1 0 TPR/MLP1/MLP2-like protein bZIP_1 PF00170.21 gi|212224239|ref|YP_002307475.1| - 0.18 11.9 3.2 0.39 10.9 3.2 1.6 1 0 0 1 1 1 0 bZIP transcription factor VSG_B PF13206.6 gi|212224239|ref|YP_002307475.1| - 0.27 10.4 1.5 0.43 9.8 1.5 1.2 1 0 0 1 1 1 0 Trypanosomal VSG domain DUF4509 PF14970.6 gi|212224239|ref|YP_002307475.1| - 0.39 10.6 2.3 0.66 9.9 1.2 1.9 2 1 0 2 2 2 0 Domain of unknown function (DUF4509) FlgN PF05130.12 gi|212224239|ref|YP_002307475.1| - 0.55 10.7 3.4 0.78 10.2 2.4 1.7 2 0 0 2 2 2 0 FlgN protein APG6_N PF17675.1 gi|212224239|ref|YP_002307475.1| - 1.4 9.5 8.9 4.5 7.8 1.1 2.4 1 1 1 2 2 2 0 Apg6 coiled-coil region Kinesin_assoc PF16183.5 gi|212224239|ref|YP_002307475.1| - 5.1 7.2 6.6 0.42 10.7 1.4 1.8 2 0 0 2 2 1 0 Kinesin-associated MoeA_N PF03453.17 gi|212224240|ref|YP_002307476.1| - 5.1e-43 146.5 0.1 9.7e-43 145.6 0.1 1.5 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.24 gi|212224240|ref|YP_002307476.1| - 3.6e-25 88.3 0.0 5.5e-25 87.7 0.0 1.3 1 0 0 1 1 1 1 Probable molybdopterin binding domain MoeA_C PF03454.15 gi|212224240|ref|YP_002307476.1| - 9.4e-18 64.2 0.0 3.7e-17 62.3 0.0 2.1 1 0 0 1 1 1 1 MoeA C-terminal region (domain IV) AAA PF00004.29 gi|212224243|ref|YP_002307479.1| - 2.8e-103 341.6 0.4 5.3e-51 172.5 0.0 3.2 3 0 0 3 3 3 2 ATPase family associated with various cellular activities (AAA) CDC48_N PF02359.18 gi|212224243|ref|YP_002307479.1| - 3.2e-31 107.3 0.1 1.3e-29 102.2 0.5 3.2 3 0 0 3 3 3 1 Cell division protein 48 (CDC48), N-terminal domain AAA_lid_3 PF17862.1 gi|212224243|ref|YP_002307479.1| - 4.2e-31 106.5 2.8 7.7e-17 60.8 0.3 2.8 2 0 0 2 2 2 2 AAA+ lid domain AAA_16 PF13191.6 gi|212224243|ref|YP_002307479.1| - 5.2e-17 62.7 1.0 2e-06 28.3 0.0 4.6 3 2 0 4 4 4 2 AAA ATPase domain RuvB_N PF05496.12 gi|212224243|ref|YP_002307479.1| - 7.3e-17 61.6 0.0 1.9e-08 34.2 0.0 2.9 2 0 0 2 2 2 2 Holliday junction DNA helicase RuvB P-loop domain AAA_2 PF07724.14 gi|212224243|ref|YP_002307479.1| - 4.8e-15 56.1 0.0 3.1e-08 33.9 0.0 2.8 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) CDC48_2 PF02933.17 gi|212224243|ref|YP_002307479.1| - 7.7e-15 54.4 0.1 2.9e-14 52.6 0.1 2.0 2 0 0 2 2 1 1 Cell division protein 48 (CDC48), domain 2 AAA_22 PF13401.6 gi|212224243|ref|YP_002307479.1| - 1.3e-12 48.1 1.1 0.00046 20.5 0.0 4.8 2 2 1 3 3 3 2 AAA domain AAA_5 PF07728.14 gi|212224243|ref|YP_002307479.1| - 1.4e-12 47.8 4.1 6.9e-05 22.9 0.1 4.5 3 2 0 3 3 2 2 AAA domain (dynein-related subfamily) TIP49 PF06068.13 gi|212224243|ref|YP_002307479.1| - 1.3e-11 44.3 0.0 0.00058 19.2 0.0 3.7 3 0 0 3 3 3 2 TIP49 P-loop domain AAA_33 PF13671.6 gi|212224243|ref|YP_002307479.1| - 6.7e-11 42.5 0.0 0.00049 20.3 0.0 2.7 2 0 0 2 2 2 2 AAA domain AAA_14 PF13173.6 gi|212224243|ref|YP_002307479.1| - 2.7e-10 40.4 0.0 0.00015 21.8 0.0 2.6 2 0 0 2 2 2 2 AAA domain Sigma54_activat PF00158.26 gi|212224243|ref|YP_002307479.1| - 5.9e-09 35.8 0.1 0.014 15.1 0.1 4.0 3 1 0 3 3 3 2 Sigma-54 interaction domain IstB_IS21 PF01695.17 gi|212224243|ref|YP_002307479.1| - 4.4e-08 33.1 0.2 0.0082 15.9 0.0 2.9 3 0 0 3 3 2 2 IstB-like ATP binding protein AAA_18 PF13238.6 gi|212224243|ref|YP_002307479.1| - 8.2e-08 32.9 2.9 0.035 14.7 0.0 4.2 4 0 0 4 4 3 2 AAA domain Vps4_C PF09336.10 gi|212224243|ref|YP_002307479.1| - 1e-07 31.9 0.4 0.0002 21.3 0.1 3.0 2 0 0 2 2 2 1 Vps4 C terminal oligomerisation domain RNA_helicase PF00910.22 gi|212224243|ref|YP_002307479.1| - 1.1e-07 32.2 0.0 0.028 14.8 0.0 2.7 2 0 0 2 2 2 2 RNA helicase AAA_24 PF13479.6 gi|212224243|ref|YP_002307479.1| - 4.3e-07 29.9 0.0 0.025 14.3 0.0 2.7 2 1 0 2 2 2 2 AAA domain Mg_chelatase PF01078.21 gi|212224243|ref|YP_002307479.1| - 6.8e-07 28.9 0.3 0.047 13.1 0.0 2.6 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI Bac_DnaA PF00308.18 gi|212224243|ref|YP_002307479.1| - 1.5e-06 28.2 0.0 0.004 17.0 0.0 2.9 3 0 0 3 3 2 2 Bacterial dnaA protein AAA_28 PF13521.6 gi|212224243|ref|YP_002307479.1| - 2.5e-06 27.8 0.0 0.057 13.7 0.0 2.9 2 0 0 2 2 2 2 AAA domain NACHT PF05729.12 gi|212224243|ref|YP_002307479.1| - 2.7e-06 27.4 0.7 0.97 9.3 0.0 4.4 5 0 0 5 5 4 2 NACHT domain DUF815 PF05673.13 gi|212224243|ref|YP_002307479.1| - 3.1e-06 26.5 0.0 0.061 12.5 0.0 2.5 2 0 0 2 2 2 2 Protein of unknown function (DUF815) AAA_25 PF13481.6 gi|212224243|ref|YP_002307479.1| - 3.3e-06 26.8 5.5 0.15 11.6 1.6 4.5 3 1 0 3 3 3 2 AAA domain AAA_7 PF12775.7 gi|212224243|ref|YP_002307479.1| - 6.1e-06 25.9 0.0 0.095 12.2 0.0 3.1 4 0 0 4 4 2 2 P-loop containing dynein motor region ATPase PF06745.13 gi|212224243|ref|YP_002307479.1| - 6.3e-06 25.7 3.4 0.17 11.2 0.0 4.3 3 2 1 4 4 3 2 KaiC ABC_tran PF00005.27 gi|212224243|ref|YP_002307479.1| - 1.5e-05 25.5 0.1 0.39 11.2 0.0 3.4 4 0 0 4 4 2 2 ABC transporter PhoH PF02562.16 gi|212224243|ref|YP_002307479.1| - 4e-05 23.2 0.1 0.38 10.2 0.0 2.5 2 0 0 2 2 2 2 PhoH-like protein TsaE PF02367.17 gi|212224243|ref|YP_002307479.1| - 4.7e-05 23.4 0.0 0.31 11.1 0.0 2.8 2 1 0 2 2 2 2 Threonylcarbamoyl adenosine biosynthesis protein TsaE ATPase_2 PF01637.18 gi|212224243|ref|YP_002307479.1| - 5.1e-05 23.3 6.8 0.0085 16.0 0.0 4.3 4 1 1 5 5 5 1 ATPase domain predominantly from Archaea AAA_3 PF07726.11 gi|212224243|ref|YP_002307479.1| - 5.6e-05 23.0 0.0 0.4 10.6 0.0 2.7 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) Parvo_NS1 PF01057.17 gi|212224243|ref|YP_002307479.1| - 0.00011 21.4 0.0 0.43 9.6 0.0 2.2 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 AAA_30 PF13604.6 gi|212224243|ref|YP_002307479.1| - 0.00015 21.6 1.2 0.96 9.1 0.1 3.4 3 1 0 3 3 3 2 AAA domain DUF2075 PF09848.9 gi|212224243|ref|YP_002307479.1| - 0.00016 21.0 0.0 0.22 10.7 0.0 2.6 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) Zeta_toxin PF06414.12 gi|212224243|ref|YP_002307479.1| - 0.00017 21.0 0.0 0.3 10.4 0.0 2.7 2 0 0 2 2 2 2 Zeta toxin NB-ARC PF00931.22 gi|212224243|ref|YP_002307479.1| - 0.00051 19.3 0.0 1.1 8.4 0.0 2.9 3 0 0 3 3 2 2 NB-ARC domain AAA_17 PF13207.6 gi|212224243|ref|YP_002307479.1| - 0.00063 20.2 2.1 3.6 8.0 0.0 4.2 3 1 1 4 4 3 0 AAA domain TniB PF05621.11 gi|212224243|ref|YP_002307479.1| - 0.0022 17.4 0.2 17 4.8 0.0 4.2 4 0 0 4 4 4 0 Bacterial TniB protein AAA_11 PF13086.6 gi|212224243|ref|YP_002307479.1| - 0.0022 17.8 3.2 0.96 9.2 0.3 3.1 3 1 0 3 3 3 2 AAA domain Sigma54_activ_2 PF14532.6 gi|212224243|ref|YP_002307479.1| - 0.0024 18.0 0.0 5.6 7.1 0.0 3.1 3 0 0 3 3 3 0 Sigma-54 interaction domain AAA_19 PF13245.6 gi|212224243|ref|YP_002307479.1| - 0.0025 18.2 3.0 2.7 8.3 0.1 3.3 2 2 1 3 3 3 1 AAA domain AFG1_ATPase PF03969.16 gi|212224243|ref|YP_002307479.1| - 0.0078 15.1 0.0 3.5 6.4 0.1 2.7 2 1 0 2 2 2 0 AFG1-like ATPase Zot PF05707.12 gi|212224243|ref|YP_002307479.1| - 0.012 15.3 0.0 1 9.0 0.0 2.9 2 1 1 3 3 3 0 Zonular occludens toxin (Zot) NTPase_1 PF03266.15 gi|212224243|ref|YP_002307479.1| - 0.012 15.5 5.5 7.1 6.5 0.0 4.6 3 2 2 5 5 4 0 NTPase Cytidylate_kin PF02224.18 gi|212224243|ref|YP_002307479.1| - 0.021 14.6 1.3 6.1 6.5 0.0 3.3 3 0 0 3 3 3 0 Cytidylate kinase Viral_helicase1 PF01443.18 gi|212224243|ref|YP_002307479.1| - 0.037 13.8 0.0 2 8.1 0.0 2.4 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase T2SSE PF00437.20 gi|212224243|ref|YP_002307479.1| - 0.043 12.9 0.0 4 6.4 0.0 3.0 3 0 0 3 3 3 0 Type II/IV secretion system protein SKI PF01202.22 gi|212224243|ref|YP_002307479.1| - 0.072 13.2 1.2 12 6.0 0.0 3.4 3 0 0 3 3 3 0 Shikimate kinase AAA_29 PF13555.6 gi|212224243|ref|YP_002307479.1| - 0.073 12.8 0.0 16 5.3 0.0 2.5 2 0 0 2 2 2 0 P-loop containing region of AAA domain ATP-cone PF03477.16 gi|212224243|ref|YP_002307479.1| - 0.089 13.4 6.3 0.085 13.4 0.8 3.4 3 0 0 3 3 2 0 ATP cone domain IPT PF01745.16 gi|212224243|ref|YP_002307479.1| - 0.14 11.5 0.1 15 4.9 0.0 2.7 2 0 0 2 2 2 0 Isopentenyl transferase ApoLp-III PF07464.11 gi|212224243|ref|YP_002307479.1| - 0.24 11.5 1.6 1.3 9.1 0.2 2.5 2 0 0 2 2 2 0 Apolipophorin-III precursor (apoLp-III) NPA PF16469.5 gi|212224243|ref|YP_002307479.1| - 0.85 10.2 5.4 0.89 10.1 0.6 2.5 2 0 0 2 2 2 0 Nematode polyprotein allergen ABA-1 DUF2312 PF10073.9 gi|212224243|ref|YP_002307479.1| - 6 6.6 9.3 1.9 8.2 4.7 2.6 2 0 0 2 2 1 0 Uncharacterized protein conserved in bacteria (DUF2312) PRC PF05239.16 gi|212224244|ref|YP_002307480.1| - 1.2e-13 50.9 1.5 1.4e-13 50.7 1.5 1.1 1 0 0 1 1 1 1 PRC-barrel domain EB1 PF03271.17 gi|212224244|ref|YP_002307480.1| - 0.041 14.1 0.0 0.2 11.9 0.0 2.1 2 1 0 2 2 2 0 EB1-like C-terminal motif Metallophos_2 PF12850.7 gi|212224245|ref|YP_002307481.1| - 1.6e-30 106.5 0.0 1.9e-30 106.2 0.0 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|212224245|ref|YP_002307481.1| - 5.9e-17 62.8 0.1 7.1e-17 62.6 0.1 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_3 PF14582.6 gi|212224245|ref|YP_002307481.1| - 0.028 13.7 0.0 0.28 10.5 0.0 2.2 1 1 2 3 3 3 0 Metallophosphoesterase, calcineurin superfamily Succ_CoA_lig PF13607.6 gi|212224246|ref|YP_002307482.1| - 3.5e-55 185.6 0.5 1.4e-54 183.6 0.2 2.1 3 0 0 3 3 3 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.6 gi|212224246|ref|YP_002307482.1| - 9.4e-23 80.9 0.1 3.9e-21 75.7 0.1 2.4 2 0 0 2 2 2 1 CoA binding domain CoA_binding PF02629.19 gi|212224246|ref|YP_002307482.1| - 5.7e-14 52.6 1.0 2e-13 50.8 0.4 2.2 2 0 0 2 2 2 1 CoA binding domain GFO_IDH_MocA PF01408.22 gi|212224246|ref|YP_002307482.1| - 0.04 14.8 0.1 2.3 9.0 0.0 3.3 4 0 0 4 4 4 0 Oxidoreductase family, NAD-binding Rossmann fold PsiE PF06146.12 gi|212224247|ref|YP_002307483.1| - 6.7e-12 45.6 9.9 6.7e-12 45.6 9.9 1.8 2 0 0 2 2 2 1 Phosphate-starvation-inducible E Sulf_transp PF04143.14 gi|212224247|ref|YP_002307483.1| - 0.13 11.8 1.5 0.36 10.3 0.2 1.9 1 1 1 2 2 2 0 Sulphur transport DUF2070 PF09843.9 gi|212224247|ref|YP_002307483.1| - 1.3 7.2 11.7 1.4 7.1 11.7 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) XPG_I PF00867.18 gi|212224248|ref|YP_002307484.1| - 6.2e-29 100.2 0.0 1.2e-28 99.2 0.0 1.5 1 0 0 1 1 1 1 XPG I-region XPG_N PF00752.17 gi|212224248|ref|YP_002307484.1| - 2.3e-22 79.4 0.0 5.8e-22 78.1 0.0 1.7 1 0 0 1 1 1 1 XPG N-terminal domain DUF4878 PF12870.7 gi|212224248|ref|YP_002307484.1| - 0.089 13.1 0.1 0.24 11.7 0.1 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF4878) 5_3_exonuc PF01367.20 gi|212224248|ref|YP_002307484.1| - 0.13 12.8 0.0 0.42 11.3 0.0 1.8 1 0 0 1 1 1 0 5'-3' exonuclease, C-terminal SAM fold TPR_8 PF13181.6 gi|212224248|ref|YP_002307484.1| - 5.4 7.5 5.6 0.74 10.2 0.1 2.6 3 0 0 3 3 3 0 Tetratricopeptide repeat TFIIB PF00382.19 gi|212224249|ref|YP_002307485.1| - 2e-45 152.7 2.9 9.9e-23 80.0 0.1 2.3 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.12 gi|212224249|ref|YP_002307485.1| - 1.3e-19 69.4 2.3 2.3e-19 68.6 2.3 1.4 1 0 0 1 1 1 1 TFIIB zinc-binding RB_B PF01857.20 gi|212224249|ref|YP_002307485.1| - 0.00072 19.6 0.0 0.0024 17.9 0.0 1.8 1 1 1 2 2 2 1 Retinoblastoma-associated protein B domain HTH_AsnC-type PF13404.6 gi|212224249|ref|YP_002307485.1| - 0.0011 18.7 0.3 0.055 13.3 0.2 3.2 3 0 0 3 3 3 1 AsnC-type helix-turn-helix domain HARE-HTH PF05066.13 gi|212224249|ref|YP_002307485.1| - 0.0016 18.8 0.1 1.2 9.6 0.0 3.0 2 1 1 3 3 3 1 HB1, ASXL, restriction endonuclease HTH domain Sigma70_r4 PF04545.16 gi|212224249|ref|YP_002307485.1| - 0.0021 17.5 6.0 0.0044 16.5 0.3 3.9 5 1 1 6 6 6 1 Sigma-70, region 4 Prim_Zn_Ribbon PF08273.12 gi|212224249|ref|YP_002307485.1| - 0.0028 17.9 0.7 0.0052 17.0 0.7 1.5 1 0 0 1 1 1 1 Zinc-binding domain of primase-helicase HTH_Tnp_ISL3 PF13542.6 gi|212224249|ref|YP_002307485.1| - 0.0069 15.8 0.1 0.21 11.0 0.1 2.8 2 1 1 3 3 3 1 Helix-turn-helix domain of transposase family ISL3 UPF0253 PF06786.12 gi|212224249|ref|YP_002307485.1| - 0.011 16.0 0.6 0.57 10.5 0.1 2.9 3 0 0 3 3 3 0 Uncharacterised protein family (UPF0253) HTH_11 PF08279.12 gi|212224249|ref|YP_002307485.1| - 0.023 14.6 0.4 6 6.9 0.0 2.6 2 0 0 2 2 2 0 HTH domain GerE PF00196.19 gi|212224249|ref|YP_002307485.1| - 0.057 13.0 0.1 1.3 8.7 0.2 2.8 3 0 0 3 3 3 0 Bacterial regulatory proteins, luxR family Cyclin_N PF00134.23 gi|212224249|ref|YP_002307485.1| - 0.074 12.8 0.1 3.5 7.4 0.0 2.2 1 1 0 2 2 2 0 Cyclin, N-terminal domain DUF2318 PF10080.9 gi|212224249|ref|YP_002307485.1| - 0.083 13.0 0.2 0.16 12.1 0.2 1.4 1 0 0 1 1 1 0 Predicted membrane protein (DUF2318) Ribosomal_S27e PF01667.17 gi|212224249|ref|YP_002307485.1| - 0.12 12.1 0.5 0.19 11.5 0.5 1.3 1 0 0 1 1 1 0 Ribosomal protein S27 FYDLN_acid PF09538.10 gi|212224249|ref|YP_002307485.1| - 0.19 12.4 0.0 0.41 11.3 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (FYDLN_acid) zf-C2H2_12 PF18658.1 gi|212224249|ref|YP_002307485.1| - 0.23 11.1 1.7 0.51 10.0 0.1 2.2 1 1 1 2 2 2 0 Zinc-finger C2H2-type zf-RRN7 PF11781.8 gi|212224249|ref|YP_002307485.1| - 0.31 10.8 6.0 3.2 7.5 6.0 2.1 1 1 0 1 1 1 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 Rubredoxin PF00301.20 gi|212224249|ref|YP_002307485.1| - 0.55 10.3 4.1 13 5.9 0.3 2.4 1 1 1 2 2 2 0 Rubredoxin Auto_anti-p27 PF06677.12 gi|212224249|ref|YP_002307485.1| - 0.67 10.2 2.5 1.3 9.3 2.5 1.5 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) ADK_lid PF05191.14 gi|212224249|ref|YP_002307485.1| - 2.4 8.2 4.2 6.8 6.8 4.2 1.7 1 1 0 1 1 1 0 Adenylate kinase, active site lid Zn_Tnp_IS1595 PF12760.7 gi|212224249|ref|YP_002307485.1| - 3.5 7.7 6.1 0.33 11.0 1.2 1.9 2 0 0 2 2 1 0 Transposase zinc-ribbon domain Nudix_N_2 PF14803.6 gi|212224249|ref|YP_002307485.1| - 4.2 7.4 5.7 9.4 6.3 0.2 2.6 2 0 0 2 2 2 0 Nudix N-terminal DUF3783 PF12646.7 gi|212224250|ref|YP_002307486.1| - 0.051 13.5 0.1 0.098 12.6 0.1 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF3783) Ribosomal_L6 PF00347.23 gi|212224250|ref|YP_002307486.1| - 0.089 13.5 0.1 0.15 12.8 0.1 1.4 1 0 0 1 1 1 0 Ribosomal protein L6 dsDNA_bind PF01984.20 gi|212224251|ref|YP_002307487.1| - 9e-27 93.5 11.0 1e-26 93.4 11.0 1.0 1 0 0 1 1 1 1 Double-stranded DNA-binding domain T3SS_needle_reg PF09025.10 gi|212224251|ref|YP_002307487.1| - 0.0057 16.6 0.5 0.16 12.0 0.0 2.1 2 0 0 2 2 2 1 YopR, type III needle-polymerisation regulator PP2C_C PF07830.13 gi|212224251|ref|YP_002307487.1| - 0.023 15.1 0.9 0.05 14.1 0.6 1.8 1 1 1 2 2 2 0 Protein serine/threonine phosphatase 2C, C-terminal domain TSKS PF15358.6 gi|212224251|ref|YP_002307487.1| - 0.22 9.8 3.4 0.26 9.6 3.4 1.1 1 0 0 1 1 1 0 Testis-specific serine kinase substrate Ribosomal_S19e PF01090.19 gi|212224252|ref|YP_002307488.1| - 1.7e-58 196.2 0.0 1.9e-58 196.0 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S19e HTH_12 PF08461.10 gi|212224252|ref|YP_002307488.1| - 0.00061 19.7 0.2 0.016 15.2 0.0 2.6 3 0 0 3 3 3 1 Ribonuclease R winged-helix domain GntR PF00392.21 gi|212224252|ref|YP_002307488.1| - 0.0013 18.4 0.2 0.0052 16.4 0.0 2.1 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family DUF505 PF04458.12 gi|212224252|ref|YP_002307488.1| - 0.086 11.2 0.0 0.11 10.8 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF505) TrmB PF01978.19 gi|212224252|ref|YP_002307488.1| - 0.12 12.3 0.0 0.37 10.7 0.0 1.8 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB CRS1_YhbY PF01985.21 gi|212224253|ref|YP_002307489.1| - 1.6e-12 47.4 0.3 1.6e-12 47.4 0.3 1.6 2 0 0 2 2 2 1 CRS1 / YhbY (CRM) domain IMD PF08397.11 gi|212224253|ref|YP_002307489.1| - 0.25 10.7 4.6 0.31 10.4 4.3 1.3 1 1 0 1 1 1 0 IRSp53/MIM homology domain Asn_synthase PF00733.21 gi|212224254|ref|YP_002307490.1| - 7e-05 22.6 0.0 0.00015 21.6 0.0 1.5 1 1 0 2 2 2 1 Asparagine synthase QueC PF06508.13 gi|212224254|ref|YP_002307490.1| - 0.001 18.6 0.0 0.0013 18.2 0.0 1.3 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC Diphthami_syn_2 PF01902.17 gi|212224254|ref|YP_002307490.1| - 0.011 15.2 0.0 0.016 14.7 0.0 1.3 1 0 0 1 1 1 0 Diphthamide synthase tRNA_Me_trans PF03054.16 gi|212224254|ref|YP_002307490.1| - 0.015 14.1 0.0 0.024 13.4 0.0 1.4 1 1 0 1 1 1 0 tRNA methyl transferase ThiI PF02568.14 gi|212224254|ref|YP_002307490.1| - 0.051 13.1 0.0 0.16 11.5 0.0 1.8 2 0 0 2 2 2 0 Thiamine biosynthesis protein (ThiI) Ribosomal_L18A PF01775.17 gi|212224255|ref|YP_002307491.1| - 9.3e-12 45.1 0.1 1.1e-11 44.9 0.1 1.1 1 0 0 1 1 1 1 Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A eIF-6 PF01912.18 gi|212224256|ref|YP_002307492.1| - 5.5e-70 234.8 0.0 7e-70 234.4 0.0 1.1 1 0 0 1 1 1 1 eIF-6 family Ribosomal_L31e PF01198.19 gi|212224257|ref|YP_002307493.1| - 4.2e-11 42.9 1.7 5.2e-11 42.6 1.7 1.1 1 0 0 1 1 1 1 Ribosomal protein L31e Ribosomal_L39 PF00832.20 gi|212224258|ref|YP_002307494.1| - 1.7e-21 75.6 15.3 2.1e-21 75.3 15.3 1.1 1 0 0 1 1 1 1 Ribosomal L39 protein MM_CoA_mutase PF01642.22 gi|212224259|ref|YP_002307495.1| - 5.1e-239 794.0 0.0 5.9e-239 793.8 0.0 1.0 1 0 0 1 1 1 1 Methylmalonyl-CoA mutase Lactamase_B_2 PF12706.7 gi|212224260|ref|YP_002307496.1| - 0.00024 20.7 0.8 0.0012 18.4 0.8 2.0 1 1 0 1 1 1 1 Beta-lactamase superfamily domain RMMBL PF07521.12 gi|212224260|ref|YP_002307496.1| - 0.0027 17.6 0.0 0.0074 16.2 0.0 1.7 1 0 0 1 1 1 1 Zn-dependent metallo-hydrolase RNA specificity domain Cypo_polyhedrin PF05865.11 gi|212224260|ref|YP_002307496.1| - 0.065 12.6 0.0 0.093 12.1 0.0 1.2 1 0 0 1 1 1 0 Cypovirus polyhedrin protein MS_channel PF00924.18 gi|212224261|ref|YP_002307497.1| - 2.8e-19 69.5 2.0 2.8e-19 69.5 2.0 1.9 2 0 0 2 2 2 1 Mechanosensitive ion channel TM_helix PF05552.12 gi|212224261|ref|YP_002307497.1| - 0.0056 16.6 1.6 0.0056 16.6 1.6 2.1 2 0 0 2 2 2 1 Conserved TM helix Fumarate_red_D PF02313.17 gi|212224261|ref|YP_002307497.1| - 0.021 14.9 3.2 0.035 14.2 3.2 1.4 1 1 0 1 1 1 0 Fumarate reductase subunit D DUF3810 PF12725.7 gi|212224261|ref|YP_002307497.1| - 0.6 9.4 1.9 0.83 8.9 1.9 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3810) HSP20 PF00011.21 gi|212224262|ref|YP_002307498.1| - 6.1e-19 68.1 0.5 7.5e-19 67.8 0.5 1.1 1 0 0 1 1 1 1 Hsp20/alpha crystallin family ArsA_HSP20 PF17886.1 gi|212224262|ref|YP_002307498.1| - 7e-14 51.1 0.1 1e-13 50.6 0.1 1.3 1 0 0 1 1 1 1 HSP20-like domain found in ArsA GvpH PF05455.11 gi|212224262|ref|YP_002307498.1| - 0.0045 17.1 0.0 0.047 13.8 0.1 2.0 2 0 0 2 2 2 1 GvpH PIH1_CS PF18201.1 gi|212224262|ref|YP_002307498.1| - 0.011 16.1 0.0 0.017 15.5 0.0 1.4 1 1 0 1 1 1 0 PIH1 CS-like domain CS PF04969.16 gi|212224262|ref|YP_002307498.1| - 0.014 16.4 0.0 0.019 15.9 0.0 1.2 1 0 0 1 1 1 0 CS domain FKBP26_C PF18046.1 gi|212224262|ref|YP_002307498.1| - 0.89 9.7 4.1 11 6.3 0.1 2.7 3 0 0 3 3 3 0 FKBP26_C-terminal AAA PF00004.29 gi|212224263|ref|YP_002307499.1| - 1.1e-102 339.7 0.1 2.4e-51 173.6 0.0 2.9 3 0 0 3 3 2 2 ATPase family associated with various cellular activities (AAA) CDC48_N PF02359.18 gi|212224263|ref|YP_002307499.1| - 1.2e-36 124.7 0.2 1.5e-35 121.2 0.9 2.5 2 0 0 2 2 1 1 Cell division protein 48 (CDC48), N-terminal domain AAA_lid_3 PF17862.1 gi|212224263|ref|YP_002307499.1| - 9.2e-33 111.8 5.1 8.4e-17 60.7 0.4 2.8 2 0 0 2 2 2 2 AAA+ lid domain AAA_2 PF07724.14 gi|212224263|ref|YP_002307499.1| - 3e-17 63.2 0.2 3.5e-09 37.0 0.0 3.1 3 0 0 3 3 2 2 AAA domain (Cdc48 subfamily) RuvB_N PF05496.12 gi|212224263|ref|YP_002307499.1| - 1.1e-16 61.0 0.0 1.3e-07 31.5 0.0 3.1 2 0 0 2 2 2 2 Holliday junction DNA helicase RuvB P-loop domain AAA_16 PF13191.6 gi|212224263|ref|YP_002307499.1| - 2.8e-15 57.1 2.5 5.4e-06 26.9 0.4 4.5 2 2 1 3 3 3 2 AAA ATPase domain CDC48_2 PF02933.17 gi|212224263|ref|YP_002307499.1| - 8.8e-14 51.0 0.7 5.3e-13 48.6 0.2 2.5 2 0 0 2 2 2 1 Cell division protein 48 (CDC48), domain 2 AAA_5 PF07728.14 gi|212224263|ref|YP_002307499.1| - 2e-12 47.3 2.2 7.7e-05 22.7 0.1 4.4 3 2 0 3 3 3 2 AAA domain (dynein-related subfamily) AAA_22 PF13401.6 gi|212224263|ref|YP_002307499.1| - 2.8e-12 47.1 5.2 0.00039 20.7 0.0 5.5 3 3 1 4 4 4 2 AAA domain TIP49 PF06068.13 gi|212224263|ref|YP_002307499.1| - 1e-11 44.7 0.4 0.0003 20.1 0.0 3.4 3 1 0 3 3 3 2 TIP49 P-loop domain AAA_14 PF13173.6 gi|212224263|ref|YP_002307499.1| - 2e-11 44.0 0.0 7.9e-05 22.7 0.0 2.6 2 0 0 2 2 2 2 AAA domain AAA_33 PF13671.6 gi|212224263|ref|YP_002307499.1| - 3.1e-11 43.6 0.0 0.00022 21.4 0.0 2.6 2 0 0 2 2 2 2 AAA domain Vps4_C PF09336.10 gi|212224263|ref|YP_002307499.1| - 7.5e-10 38.7 0.3 7.9e-05 22.6 0.1 2.9 2 0 0 2 2 2 2 Vps4 C terminal oligomerisation domain AAA_18 PF13238.6 gi|212224263|ref|YP_002307499.1| - 1.3e-08 35.4 0.1 0.016 15.7 0.0 3.3 3 1 1 4 4 2 2 AAA domain IstB_IS21 PF01695.17 gi|212224263|ref|YP_002307499.1| - 2.6e-08 33.8 0.0 0.0073 16.1 0.0 2.7 2 0 0 2 2 2 2 IstB-like ATP binding protein Bac_DnaA PF00308.18 gi|212224263|ref|YP_002307499.1| - 4e-08 33.4 0.0 0.0037 17.1 0.0 3.6 2 1 2 4 4 4 2 Bacterial dnaA protein AAA_25 PF13481.6 gi|212224263|ref|YP_002307499.1| - 4.3e-08 33.0 4.6 0.94 9.0 0.1 4.7 4 0 0 4 4 4 2 AAA domain Sigma54_activat PF00158.26 gi|212224263|ref|YP_002307499.1| - 4.9e-08 32.8 0.2 0.03 14.0 0.0 4.1 3 1 0 3 3 3 2 Sigma-54 interaction domain AAA_24 PF13479.6 gi|212224263|ref|YP_002307499.1| - 9.5e-08 32.0 0.0 0.011 15.5 0.0 2.8 2 0 0 2 2 2 2 AAA domain RNA_helicase PF00910.22 gi|212224263|ref|YP_002307499.1| - 1.1e-07 32.2 0.0 0.022 15.2 0.0 2.8 2 0 0 2 2 2 2 RNA helicase AAA_28 PF13521.6 gi|212224263|ref|YP_002307499.1| - 3.4e-07 30.7 0.0 0.018 15.3 0.0 2.9 2 0 0 2 2 2 2 AAA domain Mg_chelatase PF01078.21 gi|212224263|ref|YP_002307499.1| - 5.1e-07 29.3 0.5 0.031 13.6 0.1 2.6 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI NACHT PF05729.12 gi|212224263|ref|YP_002307499.1| - 8.4e-07 29.0 0.2 0.99 9.3 0.0 4.4 4 0 0 4 4 4 2 NACHT domain ATPase_2 PF01637.18 gi|212224263|ref|YP_002307499.1| - 1e-06 28.9 3.3 0.004 17.1 0.0 4.1 3 1 0 3 3 3 2 ATPase domain predominantly from Archaea DUF815 PF05673.13 gi|212224263|ref|YP_002307499.1| - 1e-06 28.1 0.0 0.042 13.0 0.0 2.5 2 0 0 2 2 2 2 Protein of unknown function (DUF815) AAA_7 PF12775.7 gi|212224263|ref|YP_002307499.1| - 5.1e-06 26.1 0.0 0.076 12.5 0.0 2.8 2 1 0 2 2 2 2 P-loop containing dynein motor region ABC_tran PF00005.27 gi|212224263|ref|YP_002307499.1| - 8.8e-06 26.3 0.0 0.21 12.1 0.0 2.9 2 1 0 2 2 2 2 ABC transporter TsaE PF02367.17 gi|212224263|ref|YP_002307499.1| - 1.5e-05 25.0 0.0 0.14 12.2 0.0 2.7 2 1 0 2 2 2 2 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_3 PF07726.11 gi|212224263|ref|YP_002307499.1| - 3.8e-05 23.6 0.1 0.44 10.4 0.0 3.0 3 0 0 3 3 2 2 ATPase family associated with various cellular activities (AAA) DUF2075 PF09848.9 gi|212224263|ref|YP_002307499.1| - 6.5e-05 22.3 0.0 0.097 11.9 0.0 2.5 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) Zeta_toxin PF06414.12 gi|212224263|ref|YP_002307499.1| - 6.9e-05 22.2 3.0 0.28 10.5 0.0 3.6 4 0 0 4 4 3 2 Zeta toxin Parvo_NS1 PF01057.17 gi|212224263|ref|YP_002307499.1| - 9.2e-05 21.7 0.1 0.39 9.8 0.0 2.3 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 AAA_17 PF13207.6 gi|212224263|ref|YP_002307499.1| - 0.00032 21.2 0.2 2.8 8.4 0.0 3.6 3 0 0 3 3 3 1 AAA domain AAA_30 PF13604.6 gi|212224263|ref|YP_002307499.1| - 0.00035 20.3 0.5 1.3 8.7 0.0 3.1 2 1 0 2 2 2 2 AAA domain AAA_11 PF13086.6 gi|212224263|ref|YP_002307499.1| - 0.00052 19.9 0.2 0.67 9.7 0.1 2.6 2 1 0 2 2 2 1 AAA domain NB-ARC PF00931.22 gi|212224263|ref|YP_002307499.1| - 0.0006 19.1 0.6 0.78 8.9 0.0 3.1 3 0 0 3 3 2 1 NB-ARC domain ATPase PF06745.13 gi|212224263|ref|YP_002307499.1| - 0.00091 18.6 12.9 0.27 10.6 0.0 5.1 4 2 2 6 6 6 2 KaiC PhoH PF02562.16 gi|212224263|ref|YP_002307499.1| - 0.001 18.6 6.1 0.35 10.3 0.0 3.3 4 0 0 4 4 2 2 PhoH-like protein AAA_19 PF13245.6 gi|212224263|ref|YP_002307499.1| - 0.0014 19.0 2.6 1.3 9.4 0.2 3.1 2 2 1 3 3 2 1 AAA domain NTPase_1 PF03266.15 gi|212224263|ref|YP_002307499.1| - 0.0026 17.7 4.1 11 5.9 0.0 5.1 3 2 2 5 5 5 0 NTPase ATP-cone PF03477.16 gi|212224263|ref|YP_002307499.1| - 0.0028 18.2 2.5 0.006 17.1 0.4 2.8 2 0 0 2 2 1 1 ATP cone domain Zot PF05707.12 gi|212224263|ref|YP_002307499.1| - 0.0051 16.5 0.3 0.51 9.9 0.0 3.2 3 1 0 3 3 2 1 Zonular occludens toxin (Zot) Sigma54_activ_2 PF14532.6 gi|212224263|ref|YP_002307499.1| - 0.0072 16.4 0.0 4.4 7.4 0.0 2.6 2 0 0 2 2 2 0 Sigma-54 interaction domain T2SSE PF00437.20 gi|212224263|ref|YP_002307499.1| - 0.014 14.5 0.0 5.5 6.0 0.0 2.5 2 1 0 2 2 2 0 Type II/IV secretion system protein DUF1905 PF08922.11 gi|212224263|ref|YP_002307499.1| - 0.015 15.4 0.3 1.9 8.6 0.0 2.7 2 0 0 2 2 2 0 Domain of unknown function (DUF1905) Cytidylate_kin PF02224.18 gi|212224263|ref|YP_002307499.1| - 0.019 14.7 0.1 5.8 6.6 0.0 2.8 2 0 0 2 2 2 0 Cytidylate kinase ATP-synt_ab PF00006.25 gi|212224263|ref|YP_002307499.1| - 0.022 14.4 0.0 2.7 7.6 0.0 2.4 2 0 0 2 2 2 0 ATP synthase alpha/beta family, nucleotide-binding domain Viral_helicase1 PF01443.18 gi|212224263|ref|YP_002307499.1| - 0.024 14.4 0.0 1.1 8.9 0.0 2.3 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase ResIII PF04851.15 gi|212224263|ref|YP_002307499.1| - 0.038 14.0 0.0 9.2 6.2 0.0 2.7 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit TetR_C_6 PF13977.6 gi|212224263|ref|YP_002307499.1| - 0.041 14.1 4.4 0.56 10.4 1.1 2.9 3 0 0 3 3 2 0 BetI-type transcriptional repressor, C-terminal SKI PF01202.22 gi|212224263|ref|YP_002307499.1| - 0.043 13.9 1.7 13 5.9 0.0 3.6 3 0 0 3 3 3 0 Shikimate kinase IPT PF01745.16 gi|212224263|ref|YP_002307499.1| - 0.044 13.2 0.5 14 4.9 0.0 3.2 3 0 0 3 3 3 0 Isopentenyl transferase AFG1_ATPase PF03969.16 gi|212224263|ref|YP_002307499.1| - 0.052 12.4 0.0 6.1 5.6 0.0 2.5 2 0 0 2 2 2 0 AFG1-like ATPase CPT PF07931.12 gi|212224263|ref|YP_002307499.1| - 0.058 13.2 0.1 25 4.7 0.0 3.4 3 1 1 4 4 3 0 Chloramphenicol phosphotransferase-like protein DAP3 PF10236.9 gi|212224263|ref|YP_002307499.1| - 0.061 12.5 0.0 8.5 5.4 0.0 2.6 2 0 0 2 2 2 0 Mitochondrial ribosomal death-associated protein 3 KAP_NTPase PF07693.14 gi|212224263|ref|YP_002307499.1| - 0.064 12.5 2.5 4 6.6 0.1 3.8 2 2 0 3 3 3 0 KAP family P-loop domain cobW PF02492.19 gi|212224263|ref|YP_002307499.1| - 0.075 12.6 0.0 17 5.0 0.0 2.7 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain Lipase_GDSL_2 PF13472.6 gi|212224263|ref|YP_002307499.1| - 0.09 13.2 0.2 1.1 9.6 0.1 2.7 3 0 0 3 3 3 0 GDSL-like Lipase/Acylhydrolase family AAA_29 PF13555.6 gi|212224263|ref|YP_002307499.1| - 0.15 11.8 0.2 25 4.7 0.0 2.4 2 0 0 2 2 2 0 P-loop containing region of AAA domain Mago-bind PF09282.10 gi|212224263|ref|YP_002307499.1| - 0.16 11.8 0.8 38 4.3 0.0 3.6 3 0 0 3 3 3 0 Mago binding Spore_III_AB PF09548.10 gi|212224263|ref|YP_002307499.1| - 2.3 8.3 7.0 24 5.0 0.1 3.7 4 1 0 4 4 3 0 Stage III sporulation protein AB (spore_III_AB) EF-G-binding_N PF07299.11 gi|212224263|ref|YP_002307499.1| - 2.3 8.8 4.5 19 5.9 0.2 3.7 3 0 0 3 3 3 0 Elongation factor G-binding protein, N-terminal AAA_23 PF13476.6 gi|212224263|ref|YP_002307499.1| - 2.4 8.6 5.5 64 4.0 1.1 3.5 3 0 0 3 3 3 0 AAA domain DUF996 PF06195.13 gi|212224264|ref|YP_002307500.1| - 0.0016 18.7 3.6 0.0016 18.7 3.6 2.3 2 1 1 3 3 3 1 Protein of unknown function (DUF996) Prok-JAB PF14464.6 gi|212224268|ref|YP_002307504.1| - 6.8e-16 58.1 0.0 8.7e-16 57.8 0.0 1.1 1 0 0 1 1 1 1 Prokaryotic homologs of the JAB domain JAB PF01398.21 gi|212224268|ref|YP_002307504.1| - 0.0014 18.6 0.0 0.0023 17.9 0.0 1.3 1 0 0 1 1 1 1 JAB1/Mov34/MPN/PAD-1 ubiquitin protease DUF1611_N PF17396.2 gi|212224268|ref|YP_002307504.1| - 0.057 13.7 0.0 0.48 10.7 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF1611_N) Rossmann-like domain CedA PF10729.9 gi|212224268|ref|YP_002307504.1| - 0.14 12.0 0.0 0.21 11.5 0.0 1.3 1 0 0 1 1 1 0 Cell division activator CedA MobB PF03205.14 gi|212224269|ref|YP_002307505.1| - 4.9e-17 62.1 0.1 1.5e-16 60.5 0.1 1.7 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B FeS PF04060.13 gi|212224269|ref|YP_002307505.1| - 1e-08 34.7 0.6 1.9e-08 33.8 0.6 1.5 1 0 0 1 1 1 1 Putative Fe-S cluster UPF0180 PF03698.13 gi|212224269|ref|YP_002307505.1| - 0.0072 16.5 0.0 0.087 13.0 0.0 2.6 2 1 0 2 2 2 1 Uncharacterised protein family (UPF0180) Sulfatase PF00884.23 gi|212224269|ref|YP_002307505.1| - 0.0089 15.5 0.0 0.012 15.0 0.0 1.2 1 0 0 1 1 1 1 Sulfatase CbiA PF01656.23 gi|212224269|ref|YP_002307505.1| - 0.013 15.5 0.0 0.021 14.9 0.0 1.4 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_26 PF13500.6 gi|212224269|ref|YP_002307505.1| - 0.017 14.9 0.0 0.038 13.8 0.0 1.6 1 1 0 1 1 1 0 AAA domain SRP54 PF00448.22 gi|212224269|ref|YP_002307505.1| - 0.03 13.9 0.0 0.051 13.2 0.0 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain DUF150_C PF17384.2 gi|212224270|ref|YP_002307506.1| - 0.013 15.6 0.1 0.016 15.3 0.1 1.3 1 0 0 1 1 1 0 RimP C-terminal SH3 domain YonK PF09642.10 gi|212224270|ref|YP_002307506.1| - 0.048 13.8 0.0 0.11 12.7 0.0 1.6 1 1 1 2 2 2 0 YonK protein Hfq PF17209.3 gi|212224270|ref|YP_002307506.1| - 0.11 12.2 0.0 0.12 12.0 0.0 1.3 1 0 0 1 1 1 0 Hfq protein HTH_46 PF15977.5 gi|212224271|ref|YP_002307507.1| - 0.0077 16.2 0.5 0.8 9.8 0.2 2.6 2 0 0 2 2 2 2 Winged helix-turn-helix DNA binding DUF4911 PF16256.5 gi|212224271|ref|YP_002307507.1| - 0.013 15.5 0.0 0.086 12.8 0.0 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4911) DUF5362 PF17319.2 gi|212224272|ref|YP_002307508.1| - 0.0014 18.4 13.7 0.0023 17.7 13.7 1.4 1 1 0 1 1 1 1 Family of unknown function (DUF5362) DUF4013 PF13197.6 gi|212224272|ref|YP_002307508.1| - 0.013 15.4 10.2 0.015 15.2 10.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF4013) MotA_ExbB PF01618.16 gi|212224272|ref|YP_002307508.1| - 0.014 15.1 0.3 0.014 15.1 0.3 1.7 2 0 0 2 2 2 0 MotA/TolQ/ExbB proton channel family Sigma_reg_N PF13800.6 gi|212224272|ref|YP_002307508.1| - 0.031 14.6 0.7 9 6.7 0.2 2.2 2 0 0 2 2 2 0 Sigma factor regulator N-terminal T3SS_ATPase_C PF18269.1 gi|212224272|ref|YP_002307508.1| - 0.035 13.9 0.2 0.43 10.5 0.0 2.0 2 0 0 2 2 2 0 T3SS EscN ATPase C-terminal domain Oleosin PF01277.17 gi|212224272|ref|YP_002307508.1| - 0.044 13.5 2.1 0.044 13.5 2.1 2.1 2 0 0 2 2 2 0 Oleosin Tmemb_14 PF03647.13 gi|212224272|ref|YP_002307508.1| - 0.055 14.2 5.6 0.89 10.3 3.3 2.2 1 1 1 2 2 2 0 Transmembrane proteins 14C Phage_holin_2_4 PF16082.5 gi|212224272|ref|YP_002307508.1| - 0.092 12.5 0.5 0.15 11.8 0.5 1.4 1 0 0 1 1 1 0 Bacteriophage holin family, superfamily II-like TctB PF07331.11 gi|212224272|ref|YP_002307508.1| - 0.093 13.0 9.4 0.19 12.0 8.6 1.7 1 1 1 2 2 2 0 Tripartite tricarboxylate transporter TctB family PRA1 PF03208.19 gi|212224272|ref|YP_002307508.1| - 0.15 11.7 2.8 0.18 11.4 2.8 1.1 1 0 0 1 1 1 0 PRA1 family protein Phage_holin_2_3 PF16080.5 gi|212224272|ref|YP_002307508.1| - 1.3 8.8 10.5 0.07 12.9 3.3 2.0 2 0 0 2 2 2 0 Bacteriophage holin family HP1 DUF4064 PF13273.6 gi|212224272|ref|YP_002307508.1| - 6 7.2 20.2 8.5 6.7 8.6 2.6 1 1 1 2 2 2 0 Protein of unknown function (DUF4064) Claudin_2 PF13903.6 gi|212224272|ref|YP_002307508.1| - 7.4 6.3 8.3 1.4 8.7 0.9 2.2 1 1 1 2 2 2 0 PMP-22/EMP/MP20/Claudin tight junction PepSY_TM PF03929.16 gi|212224272|ref|YP_002307508.1| - 8.4 6.0 6.3 4.4 6.9 2.3 1.9 2 0 0 2 2 2 0 PepSY-associated TM region MAF_flag10 PF01973.18 gi|212224273|ref|YP_002307509.1| - 3.9e-27 95.0 0.0 5.5e-27 94.5 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function DUF115 Mut7-C PF01927.16 gi|212224274|ref|YP_002307510.1| - 6.5e-43 146.3 0.0 7.9e-43 146.1 0.0 1.0 1 0 0 1 1 1 1 Mut7-C RNAse domain DUF5615 PF18480.1 gi|212224274|ref|YP_002307510.1| - 2.7e-07 30.2 0.0 7.2e-07 28.9 0.0 1.8 1 1 0 1 1 1 1 Domain of unknown function (DUF5615) zf-IS66 PF13005.7 gi|212224274|ref|YP_002307510.1| - 0.023 15.1 0.5 1.6 9.2 0.1 2.4 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 PIN_5 PF08745.11 gi|212224274|ref|YP_002307510.1| - 0.024 14.0 0.1 0.043 13.2 0.1 1.4 2 0 0 2 2 2 0 PINc domain ribonuclease DUF35_N PF12172.8 gi|212224274|ref|YP_002307510.1| - 0.029 14.2 3.5 5.6 6.9 0.2 3.0 3 0 0 3 3 3 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Rubredoxin PF00301.20 gi|212224274|ref|YP_002307510.1| - 0.045 13.8 1.5 4.8 7.3 0.0 2.5 2 0 0 2 2 2 0 Rubredoxin TF_Zn_Ribbon PF08271.12 gi|212224274|ref|YP_002307510.1| - 0.049 13.1 0.3 8.1 6.1 0.0 2.5 2 0 0 2 2 2 0 TFIIB zinc-binding Zn-ribbon_8 PF09723.10 gi|212224274|ref|YP_002307510.1| - 0.14 12.3 0.6 14 5.8 0.0 2.3 2 0 0 2 2 2 0 Zinc ribbon domain Nitroreductase PF00881.24 gi|212224277|ref|YP_002307513.1| - 1.7e-29 103.1 0.0 2.3e-29 102.6 0.0 1.2 1 0 0 1 1 1 1 Nitroreductase family TM1586_NiRdase PF14512.6 gi|212224277|ref|YP_002307513.1| - 5.4e-13 49.0 0.0 2.1e-06 27.5 0.2 2.3 1 1 1 2 2 2 2 Putative TM nitroreductase P5CR_dimer PF14748.6 gi|212224278|ref|YP_002307514.1| - 5.4e-18 65.2 0.0 6.8e-18 64.8 0.0 1.1 1 0 0 1 1 1 1 Pyrroline-5-carboxylate reductase dimerisation HisKA PF00512.25 gi|212224279|ref|YP_002307515.1| - 0.054 13.5 1.7 7.7 6.6 0.9 2.1 1 1 1 2 2 2 0 His Kinase A (phospho-acceptor) domain Transketolase_N PF00456.21 gi|212224280|ref|YP_002307516.1| - 2.3e-27 95.8 0.0 4.7e-27 94.8 0.0 1.4 1 1 0 1 1 1 1 Transketolase, thiamine diphosphate binding domain E1_dh PF00676.20 gi|212224280|ref|YP_002307516.1| - 1e-07 31.3 0.0 1.5e-07 30.7 0.0 1.2 1 0 0 1 1 1 1 Dehydrogenase E1 component TPP_enzyme_C PF02775.21 gi|212224280|ref|YP_002307516.1| - 8.7e-07 28.8 0.1 1.5e-06 28.0 0.1 1.5 1 1 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DXP_synthase_N PF13292.6 gi|212224280|ref|YP_002307516.1| - 3.4e-06 26.5 0.0 3.4e-06 26.5 0.0 1.2 1 0 0 1 1 1 1 1-deoxy-D-xylulose-5-phosphate synthase XFP_N PF09364.10 gi|212224280|ref|YP_002307516.1| - 0.0012 17.7 0.0 0.0015 17.4 0.0 1.2 1 0 0 1 1 1 1 XFP N-terminal domain NIL PF09383.10 gi|212224280|ref|YP_002307516.1| - 0.05 13.5 0.0 0.098 12.5 0.0 1.4 1 0 0 1 1 1 0 NIL domain TPP_enzyme_N PF02776.18 gi|212224280|ref|YP_002307516.1| - 0.055 13.1 0.0 0.31 10.6 0.0 2.0 2 0 0 2 2 2 0 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Transket_pyr PF02779.24 gi|212224281|ref|YP_002307517.1| - 3.8e-35 121.2 0.1 9.7e-35 119.8 0.0 1.6 2 0 0 2 2 2 1 Transketolase, pyrimidine binding domain Transketolase_C PF02780.20 gi|212224281|ref|YP_002307517.1| - 8e-29 100.0 0.1 2.5e-28 98.4 0.1 1.8 2 0 0 2 2 2 1 Transketolase, C-terminal domain PFOR_II PF17147.4 gi|212224281|ref|YP_002307517.1| - 0.00098 19.4 0.1 0.002 18.4 0.1 1.5 1 0 0 1 1 1 1 Pyruvate:ferredoxin oxidoreductase core domain II DUF2585 PF10755.9 gi|212224281|ref|YP_002307517.1| - 0.1 12.3 0.1 0.3 10.8 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF2585) DAHP_synth_1 PF00793.20 gi|212224282|ref|YP_002307518.1| - 2.6e-77 259.4 0.0 3.4e-77 259.0 0.0 1.0 1 0 0 1 1 1 1 DAHP synthetase I family NeuB PF03102.14 gi|212224282|ref|YP_002307518.1| - 1.3e-07 31.4 0.0 5.2e-07 29.4 0.0 1.9 1 1 0 1 1 1 1 NeuB family ComA PF02679.15 gi|212224282|ref|YP_002307518.1| - 0.0025 17.3 0.0 0.029 13.9 0.0 2.0 1 1 0 1 1 1 1 (2R)-phospho-3-sulfolactate synthase (ComA) AP_endonuc_2 PF01261.24 gi|212224282|ref|YP_002307518.1| - 0.0058 16.1 0.0 1.5 8.2 0.0 2.2 2 0 0 2 2 2 2 Xylose isomerase-like TIM barrel IGPS PF00218.21 gi|212224282|ref|YP_002307518.1| - 0.16 11.1 0.0 0.53 9.4 0.0 1.8 2 0 0 2 2 2 0 Indole-3-glycerol phosphate synthase DHQ_synthase PF01761.20 gi|212224283|ref|YP_002307519.1| - 5.6e-78 261.7 0.5 8.8e-78 261.1 0.5 1.3 1 1 0 1 1 1 1 3-dehydroquinate synthase Fe-ADH PF00465.19 gi|212224283|ref|YP_002307519.1| - 8e-07 28.2 0.3 2.7e-05 23.2 0.0 2.2 2 0 0 2 2 2 2 Iron-containing alcohol dehydrogenase Fe-ADH_2 PF13685.6 gi|212224283|ref|YP_002307519.1| - 1.2e-06 28.4 0.0 3.2e-06 27.0 0.0 1.8 1 1 0 1 1 1 1 Iron-containing alcohol dehydrogenase Mor PF08765.11 gi|212224283|ref|YP_002307519.1| - 0.076 13.0 0.0 7.6 6.6 0.0 2.6 2 0 0 2 2 2 0 Mor transcription activator family DHquinase_I PF01487.15 gi|212224284|ref|YP_002307520.1| - 2.6e-51 175.1 0.0 3.2e-51 174.8 0.0 1.0 1 0 0 1 1 1 1 Type I 3-dehydroquinase Shikimate_dh_N PF08501.11 gi|212224285|ref|YP_002307521.1| - 1.5e-27 95.6 0.0 2.7e-27 94.8 0.0 1.4 1 0 0 1 1 1 1 Shikimate dehydrogenase substrate binding domain SDH_C PF18317.1 gi|212224285|ref|YP_002307521.1| - 5.2e-15 54.9 0.1 1.3e-14 53.6 0.1 1.7 1 0 0 1 1 1 1 Shikimate 5'-dehydrogenase C-terminal domain Shikimate_DH PF01488.20 gi|212224285|ref|YP_002307521.1| - 5.6e-13 49.1 0.3 1.1e-12 48.2 0.1 1.5 2 0 0 2 2 1 1 Shikimate / quinate 5-dehydrogenase AlaDh_PNT_C PF01262.21 gi|212224285|ref|YP_002307521.1| - 5.9e-06 25.7 0.2 8.6e-06 25.2 0.2 1.2 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain TrkA_N PF02254.18 gi|212224285|ref|YP_002307521.1| - 6.1e-06 26.5 0.2 1.2e-05 25.5 0.2 1.5 1 1 0 1 1 1 1 TrkA-N domain Sacchrp_dh_NADP PF03435.18 gi|212224285|ref|YP_002307521.1| - 8.7e-06 26.0 0.1 2.4e-05 24.6 0.1 1.9 1 1 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain ApbA PF02558.16 gi|212224285|ref|YP_002307521.1| - 5e-05 23.0 0.0 8.9e-05 22.2 0.0 1.4 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA NAD_binding_7 PF13241.6 gi|212224285|ref|YP_002307521.1| - 5.5e-05 23.6 0.1 8.7e-05 22.9 0.1 1.3 1 0 0 1 1 1 1 Putative NAD(P)-binding 2-Hacid_dh_C PF02826.19 gi|212224285|ref|YP_002307521.1| - 7.8e-05 22.1 0.0 0.00012 21.5 0.0 1.2 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain F420_oxidored PF03807.17 gi|212224285|ref|YP_002307521.1| - 0.00024 21.6 0.1 0.00046 20.7 0.1 1.5 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent FMO-like PF00743.19 gi|212224285|ref|YP_002307521.1| - 0.0014 17.2 0.0 0.0019 16.7 0.0 1.1 1 0 0 1 1 1 1 Flavin-binding monooxygenase-like DUF1188 PF06690.11 gi|212224285|ref|YP_002307521.1| - 0.0016 18.0 0.0 0.0023 17.5 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1188) FAD_binding_3 PF01494.19 gi|212224285|ref|YP_002307521.1| - 0.0029 16.9 0.1 0.0036 16.6 0.1 1.2 1 0 0 1 1 1 1 FAD binding domain THF_DHG_CYH_C PF02882.19 gi|212224285|ref|YP_002307521.1| - 0.0069 15.7 0.1 0.057 12.7 0.1 2.1 1 1 0 1 1 1 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain Pyr_redox_3 PF13738.6 gi|212224285|ref|YP_002307521.1| - 0.0082 15.4 0.0 0.015 14.6 0.0 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase ThiF PF00899.21 gi|212224285|ref|YP_002307521.1| - 0.022 14.1 0.5 0.043 13.2 0.5 1.4 1 0 0 1 1 1 0 ThiF family IlvN PF07991.12 gi|212224285|ref|YP_002307521.1| - 0.042 13.4 0.0 0.061 12.9 0.0 1.2 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain NAD_binding_10 PF13460.6 gi|212224285|ref|YP_002307521.1| - 0.06 13.2 0.7 0.62 9.9 0.2 2.1 1 1 1 2 2 2 0 NAD(P)H-binding DAO PF01266.24 gi|212224285|ref|YP_002307521.1| - 0.067 12.8 1.1 0.11 12.1 0.9 1.5 1 1 0 1 1 1 0 FAD dependent oxidoreductase GARS_N PF02844.15 gi|212224285|ref|YP_002307521.1| - 0.067 14.0 0.1 0.12 13.2 0.1 1.4 1 0 0 1 1 1 0 Phosphoribosylglycinamide synthetase, N domain GFO_IDH_MocA PF01408.22 gi|212224285|ref|YP_002307521.1| - 0.13 13.1 0.0 0.3 11.9 0.0 1.6 2 0 0 2 2 1 0 Oxidoreductase family, NAD-binding Rossmann fold Lycopene_cycl PF05834.12 gi|212224285|ref|YP_002307521.1| - 0.15 11.0 0.0 0.23 10.5 0.0 1.3 1 0 0 1 1 1 0 Lycopene cyclase protein GHMP_kinases_N PF00288.26 gi|212224286|ref|YP_002307522.1| - 2.3e-15 56.6 3.5 1e-13 51.3 0.2 2.7 3 0 0 3 3 3 2 GHMP kinases N terminal domain GHMP_kinases_C PF08544.13 gi|212224286|ref|YP_002307522.1| - 0.013 15.9 0.1 0.084 13.3 0.0 2.3 2 0 0 2 2 2 0 GHMP kinases C terminal EPSP_synthase PF00275.20 gi|212224287|ref|YP_002307523.1| - 3.2e-95 319.3 0.0 3.6e-95 319.1 0.0 1.0 1 0 0 1 1 1 1 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Chorismate_synt PF01264.21 gi|212224288|ref|YP_002307524.1| - 5.4e-120 400.0 0.0 6.1e-120 399.8 0.0 1.0 1 0 0 1 1 1 1 Chorismate synthase DAGAT PF03982.13 gi|212224288|ref|YP_002307524.1| - 0.19 10.6 0.0 0.28 10.1 0.0 1.2 1 0 0 1 1 1 0 Diacylglycerol acyltransferase CM_2 PF01817.21 gi|212224289|ref|YP_002307525.1| - 1.4e-19 70.2 6.0 1.8e-19 69.9 6.0 1.1 1 0 0 1 1 1 1 Chorismate mutase type II ZapB PF06005.12 gi|212224289|ref|YP_002307525.1| - 0.058 13.8 1.1 0.077 13.4 1.0 1.3 1 1 0 1 1 1 0 Cell division protein ZapB Aminotran_1_2 PF00155.21 gi|212224290|ref|YP_002307526.1| - 4.9e-36 124.7 0.0 6e-36 124.4 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class I and II Alliinase_C PF04864.13 gi|212224290|ref|YP_002307526.1| - 0.00013 21.0 0.0 0.00026 20.0 0.0 1.5 2 0 0 2 2 2 1 Allinase DUF2674 PF10879.8 gi|212224290|ref|YP_002307526.1| - 0.15 11.7 0.0 0.31 10.6 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2674) PDH PF02153.17 gi|212224291|ref|YP_002307527.1| - 6.1e-12 45.1 0.0 7.2e-12 44.9 0.0 1.1 1 0 0 1 1 1 1 Prephenate dehydrogenase 2-Hacid_dh_C PF02826.19 gi|212224291|ref|YP_002307527.1| - 0.0065 15.8 0.0 0.016 14.6 0.0 1.6 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Gp_dh_N PF00044.24 gi|212224291|ref|YP_002307527.1| - 0.038 14.3 0.0 0.079 13.3 0.0 1.6 1 0 0 1 1 1 0 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain F420_oxidored PF03807.17 gi|212224291|ref|YP_002307527.1| - 0.054 14.1 0.0 0.49 11.0 0.0 2.4 1 1 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.15 gi|212224291|ref|YP_002307527.1| - 0.14 12.3 0.0 0.52 10.5 0.0 1.9 2 0 0 2 2 2 0 NAD binding domain of 6-phosphogluconate dehydrogenase NIL PF09383.10 gi|212224291|ref|YP_002307527.1| - 0.15 11.9 0.0 0.67 9.8 0.0 2.1 1 1 0 1 1 1 0 NIL domain DSPc PF00782.20 gi|212224292|ref|YP_002307528.1| - 1.3e-16 60.6 0.0 1.5e-16 60.4 0.0 1.1 1 0 0 1 1 1 1 Dual specificity phosphatase, catalytic domain CDKN3 PF05706.12 gi|212224292|ref|YP_002307528.1| - 3.5e-09 36.5 0.0 4.6e-09 36.2 0.0 1.1 1 0 0 1 1 1 1 Cyclin-dependent kinase inhibitor 3 (CDKN3) Y_phosphatase PF00102.27 gi|212224292|ref|YP_002307528.1| - 1.5e-08 34.5 0.0 2e-08 34.1 0.0 1.1 1 0 0 1 1 1 1 Protein-tyrosine phosphatase PTPlike_phytase PF14566.6 gi|212224292|ref|YP_002307528.1| - 2.3e-06 27.8 0.0 0.00012 22.2 0.0 2.1 1 1 1 2 2 2 1 Inositol hexakisphosphate Y_phosphatase3 PF13350.6 gi|212224292|ref|YP_002307528.1| - 0.0025 17.8 0.0 0.003 17.5 0.0 1.1 1 0 0 1 1 1 1 Tyrosine phosphatase family DUF2202 PF09968.9 gi|212224293|ref|YP_002307529.1| - 8.7e-66 220.7 1.3 1.2e-65 220.3 1.3 1.2 1 0 0 1 1 1 1 Uncharacterized protein domain (DUF2202) Rubrerythrin PF02915.17 gi|212224293|ref|YP_002307529.1| - 0.00069 20.0 0.3 0.013 15.9 0.3 2.2 1 1 0 1 1 1 1 Rubrerythrin Epiglycanin_TR PF05647.11 gi|212224293|ref|YP_002307529.1| - 0.19 11.6 7.2 0.087 12.8 4.8 1.6 2 0 0 2 2 2 0 Tandem-repeating region of mucin, epiglycanin-like Caroten_synth PF04240.12 gi|212224296|ref|YP_002307532.1| - 1.1e-26 94.0 18.2 1.5e-26 93.6 18.2 1.1 1 0 0 1 1 1 1 Carotenoid biosynthesis protein DUF2202 PF09968.9 gi|212224297|ref|YP_002307533.1| - 1.2e-65 220.3 0.8 1.5e-65 220.0 0.8 1.1 1 0 0 1 1 1 1 Uncharacterized protein domain (DUF2202) Rubrerythrin PF02915.17 gi|212224297|ref|YP_002307533.1| - 0.00015 22.2 0.1 0.00025 21.4 0.1 1.3 1 0 0 1 1 1 1 Rubrerythrin DUF3829 PF12889.7 gi|212224297|ref|YP_002307533.1| - 0.059 12.8 0.2 0.1 12.0 0.2 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3829) Peptidase_M1 PF01433.20 gi|212224300|ref|YP_002307536.1| - 0.00046 19.8 0.0 0.001 18.7 0.0 1.5 1 1 0 1 1 1 1 Peptidase family M1 domain DUF211 PF02680.14 gi|212224300|ref|YP_002307536.1| - 0.012 15.8 0.0 0.035 14.2 0.0 1.7 2 0 0 2 2 2 0 Uncharacterized ArCR, COG1888 NOG1_N PF17835.1 gi|212224300|ref|YP_002307536.1| - 0.062 13.3 0.0 0.12 12.3 0.0 1.4 1 0 0 1 1 1 0 NOG1 N-terminal helical domain TipAS PF07739.13 gi|212224303|ref|YP_002307539.1| - 0.0012 19.4 0.6 0.19 12.3 0.1 2.6 1 1 1 2 2 2 2 TipAS antibiotic-recognition domain AF0941-like PF14591.6 gi|212224303|ref|YP_002307539.1| - 0.021 15.4 2.7 0.066 13.8 0.6 2.1 2 0 0 2 2 2 0 AF0941-like MSA-2c PF12238.8 gi|212224303|ref|YP_002307539.1| - 0.056 13.4 0.0 0.085 12.8 0.0 1.3 1 1 0 1 1 1 0 Merozoite surface antigen 2c DUF4844 PF16133.5 gi|212224303|ref|YP_002307539.1| - 0.12 12.9 0.3 0.2 12.2 0.2 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4844) M16C_assoc PF08367.11 gi|212224303|ref|YP_002307539.1| - 0.14 11.2 0.7 0.2 10.7 0.7 1.3 1 0 0 1 1 1 0 Peptidase M16C associated Tricorn_C1 PF14684.6 gi|212224303|ref|YP_002307539.1| - 0.16 12.1 0.1 1.3 9.1 0.0 2.2 2 0 0 2 2 2 0 Tricorn protease C1 domain HTH_20 PF12840.7 gi|212224304|ref|YP_002307540.1| - 4.3e-06 26.7 0.6 1.6e-05 24.9 0.1 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain Penicillinase_R PF03965.16 gi|212224304|ref|YP_002307540.1| - 0.00012 22.4 0.4 0.00018 21.9 0.0 1.4 2 0 0 2 2 2 1 Penicillinase repressor HTH_5 PF01022.20 gi|212224304|ref|YP_002307540.1| - 0.0016 18.2 0.4 0.0084 16.0 0.1 2.2 2 1 0 2 2 2 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 gi|212224304|ref|YP_002307540.1| - 0.012 15.5 1.0 0.19 11.7 1.0 2.3 1 1 0 1 1 1 0 MarR family RP-C PF03428.13 gi|212224304|ref|YP_002307540.1| - 0.022 14.4 3.0 0.042 13.5 0.2 2.0 2 0 0 2 2 2 0 Replication protein C N-terminal domain HTH_36 PF13730.6 gi|212224304|ref|YP_002307540.1| - 0.054 13.5 2.9 0.14 12.1 0.0 2.6 3 0 0 3 3 3 0 Helix-turn-helix domain HTH_32 PF13565.6 gi|212224304|ref|YP_002307540.1| - 0.056 14.1 1.2 0.29 11.8 0.1 2.5 2 1 1 3 3 3 0 Homeodomain-like domain HrcA_DNA-bdg PF03444.15 gi|212224304|ref|YP_002307540.1| - 0.058 13.0 0.3 0.16 11.7 0.1 1.8 2 0 0 2 2 2 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding HTH_24 PF13412.6 gi|212224304|ref|YP_002307540.1| - 0.18 11.4 1.2 2.6 7.6 0.1 2.3 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding GntR PF00392.21 gi|212224304|ref|YP_002307540.1| - 0.23 11.2 2.8 0.46 10.2 0.4 2.3 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family Methyltransf_11 PF08241.12 gi|212224305|ref|YP_002307541.1| - 1.6e-17 63.9 0.0 2.4e-17 63.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|212224305|ref|YP_002307541.1| - 1e-16 61.4 0.0 1.6e-16 60.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|212224305|ref|YP_002307541.1| - 1.8e-14 53.9 0.0 2.1e-14 53.7 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|212224305|ref|YP_002307541.1| - 7.3e-12 45.9 0.0 1.1e-11 45.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|212224305|ref|YP_002307541.1| - 4.4e-09 36.3 0.0 1e-08 35.1 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_8 PF05148.15 gi|212224305|ref|YP_002307541.1| - 9.4e-07 28.9 0.0 2.4e-06 27.6 0.0 1.6 1 1 0 1 1 1 1 Hypothetical methyltransferase Ubie_methyltran PF01209.18 gi|212224305|ref|YP_002307541.1| - 1.8e-06 27.5 0.1 0.00011 21.6 0.0 2.1 1 1 0 2 2 2 1 ubiE/COQ5 methyltransferase family MetW PF07021.12 gi|212224305|ref|YP_002307541.1| - 0.00046 19.8 0.0 0.0013 18.4 0.0 1.7 1 1 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_9 PF08003.11 gi|212224305|ref|YP_002307541.1| - 0.012 14.5 0.0 0.016 14.1 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1698) Methyltransf_2 PF00891.18 gi|212224305|ref|YP_002307541.1| - 0.016 14.5 0.5 0.091 12.0 0.5 1.9 1 1 0 1 1 1 0 O-methyltransferase domain MTS PF05175.14 gi|212224305|ref|YP_002307541.1| - 0.064 12.8 0.0 2.4 7.7 0.0 2.1 2 0 0 2 2 2 0 Methyltransferase small domain CMAS PF02353.20 gi|212224305|ref|YP_002307541.1| - 0.068 12.4 0.3 0.53 9.5 0.3 2.1 1 1 0 1 1 1 0 Mycolic acid cyclopropane synthetase Acetyltransf_1 PF00583.25 gi|212224307|ref|YP_002307543.1| - 2.1e-16 60.2 0.1 3.6e-16 59.4 0.1 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|212224307|ref|YP_002307543.1| - 2.9e-09 37.2 0.1 5.6e-09 36.3 0.1 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|212224307|ref|YP_002307543.1| - 8.5e-07 29.7 0.0 8.2e-06 26.5 0.0 2.0 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|212224307|ref|YP_002307543.1| - 4.6e-05 23.4 0.0 7.5e-05 22.7 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|212224307|ref|YP_002307543.1| - 0.00036 20.6 0.0 0.0019 18.3 0.0 2.0 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|212224307|ref|YP_002307543.1| - 0.001 19.0 0.0 0.0018 18.2 0.0 1.4 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_4 PF13420.7 gi|212224307|ref|YP_002307543.1| - 0.013 15.6 0.0 0.021 15.0 0.0 1.4 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_6 PF13480.7 gi|212224307|ref|YP_002307543.1| - 0.017 15.3 0.1 0.043 14.0 0.1 1.8 2 0 0 2 2 2 0 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|212224307|ref|YP_002307543.1| - 0.023 14.8 0.0 0.043 14.0 0.0 1.4 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase PanZ PF12568.8 gi|212224307|ref|YP_002307543.1| - 0.17 11.6 0.0 0.26 11.0 0.0 1.3 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain, PanZ Acetyltransf_1 PF00583.25 gi|212224308|ref|YP_002307544.1| - 2.3e-13 50.4 0.0 3.4e-13 49.8 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|212224308|ref|YP_002307544.1| - 1.4e-12 47.8 0.1 2e-12 47.3 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|212224308|ref|YP_002307544.1| - 4e-08 33.3 0.0 9.6e-08 32.0 0.0 1.5 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 gi|212224308|ref|YP_002307544.1| - 0.00032 20.9 0.0 0.00042 20.5 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|212224308|ref|YP_002307544.1| - 0.0077 16.9 0.1 0.013 16.1 0.1 1.5 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|212224308|ref|YP_002307544.1| - 0.015 15.4 0.0 0.024 14.8 0.0 1.3 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase MFS_1 PF07690.16 gi|212224309|ref|YP_002307545.1| - 3e-09 36.3 38.1 0.00018 20.6 19.9 3.0 2 1 1 3 3 3 3 Major Facilitator Superfamily Hydrolase PF00702.26 gi|212224310|ref|YP_002307546.1| - 3.4e-12 47.1 0.1 8.9e-11 42.5 0.1 2.3 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|212224310|ref|YP_002307546.1| - 6e-12 46.4 0.1 9.1e-12 45.8 0.1 1.3 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.12 gi|212224310|ref|YP_002307546.1| - 8.4e-09 35.5 0.1 0.0016 18.2 0.1 2.4 3 0 0 3 3 3 2 haloacid dehalogenase-like hydrolase Hjc PF01870.18 gi|212224310|ref|YP_002307546.1| - 0.027 14.4 0.0 0.071 13.1 0.0 1.6 1 0 0 1 1 1 0 Archaeal holliday junction resolvase (hjc) Ad_Cy_reg PF16701.5 gi|212224310|ref|YP_002307546.1| - 0.11 12.2 0.0 0.3 10.8 0.0 1.6 1 1 0 1 1 1 0 Adenylate cyclase regulatory domain NTP_transf_2 PF01909.23 gi|212224312|ref|YP_002307548.1| - 4.8e-07 30.0 0.1 6.9e-07 29.5 0.1 1.3 1 1 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|212224312|ref|YP_002307548.1| - 0.00011 22.2 0.1 0.0002 21.4 0.1 1.5 1 1 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase NTF-like PF14540.6 gi|212224312|ref|YP_002307548.1| - 0.065 13.0 0.1 0.35 10.6 0.0 1.9 1 1 1 2 2 2 0 Nucleotidyltransferase-like CTP_transf_like PF01467.26 gi|212224313|ref|YP_002307549.1| - 1.1e-18 67.8 0.2 5.8e-18 65.5 0.1 2.1 2 1 0 2 2 2 1 Cytidylyltransferase-like HIGH_NTase1 PF05636.11 gi|212224313|ref|YP_002307549.1| - 0.007 15.6 0.0 0.2 10.8 0.0 2.0 2 0 0 2 2 2 2 HIGH Nucleotidyl Transferase SAM_adeno_trans PF01887.16 gi|212224314|ref|YP_002307550.1| - 3.5e-75 252.5 0.0 3.9e-75 252.3 0.0 1.0 1 0 0 1 1 1 1 S-adenosyl-l-methionine hydroxide adenosyltransferase TOBE_3 PF12857.7 gi|212224314|ref|YP_002307550.1| - 0.11 12.4 0.4 1.4 8.9 0.1 2.3 2 0 0 2 2 2 0 TOBE-like domain Transglut_core PF01841.19 gi|212224315|ref|YP_002307551.1| - 1.6e-08 35.0 0.0 3.6e-08 33.8 0.0 1.6 1 0 0 1 1 1 1 Transglutaminase-like superfamily DUF11 PF01345.18 gi|212224315|ref|YP_002307551.1| - 0.00024 21.3 2.1 0.034 14.5 0.2 2.6 2 0 0 2 2 2 2 Domain of unknown function DUF11 MG2 PF01835.19 gi|212224315|ref|YP_002307551.1| - 0.016 15.6 0.0 0.065 13.7 0.0 2.1 1 1 0 1 1 1 0 MG2 domain DUF5601 PF18151.1 gi|212224315|ref|YP_002307551.1| - 0.079 13.3 0.0 4.7 7.6 0.0 2.6 2 0 0 2 2 2 0 Domain of unknown function (DUF5601) Trm56 PF01994.16 gi|212224316|ref|YP_002307552.1| - 1.7e-53 179.6 0.6 2.4e-53 179.1 0.1 1.4 2 0 0 2 2 2 1 tRNA ribose 2'-O-methyltransferase, aTrm56 SPOUT_MTase_2 PF14419.6 gi|212224316|ref|YP_002307552.1| - 0.00049 19.5 0.1 0.001 18.5 0.1 1.6 1 1 0 1 1 1 1 AF2226-like SPOUT RNA Methylase fused to THUMP DUF3126 PF11324.8 gi|212224316|ref|YP_002307552.1| - 0.11 12.4 0.1 0.81 9.6 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3126) CDP-OH_P_transf PF01066.21 gi|212224317|ref|YP_002307553.1| - 2e-15 57.3 1.2 2e-15 57.3 1.2 2.0 2 1 0 2 2 2 1 CDP-alcohol phosphatidyltransferase HAD_2 PF13419.6 gi|212224318|ref|YP_002307554.1| - 1.2e-27 97.1 0.1 1.6e-27 96.8 0.1 1.3 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|212224318|ref|YP_002307554.1| - 4.8e-16 59.7 0.6 4.4e-15 56.5 0.6 2.1 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|212224318|ref|YP_002307554.1| - 9.4e-09 35.2 0.1 2.3e-08 33.9 0.0 1.8 2 0 0 2 2 2 1 HAD-hyrolase-like HAD PF12710.7 gi|212224318|ref|YP_002307554.1| - 2.4e-07 31.3 0.1 3.9e-07 30.7 0.1 1.3 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Put_Phosphatase PF06888.12 gi|212224318|ref|YP_002307554.1| - 1.6e-05 24.5 0.0 0.0055 16.1 0.0 2.9 3 0 0 3 3 3 1 Putative Phosphatase DUF2405 PF10293.9 gi|212224318|ref|YP_002307554.1| - 0.094 12.7 0.0 0.18 11.7 0.0 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF2405) AsnC_trans_reg PF01037.21 gi|212224319|ref|YP_002307555.1| - 0.0097 15.9 0.0 0.021 14.8 0.0 1.6 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain HsdM_N PF12161.8 gi|212224319|ref|YP_002307555.1| - 0.022 15.4 0.0 0.04 14.5 0.0 1.4 1 0 0 1 1 1 0 HsdM N-terminal domain DUF1883 PF08980.10 gi|212224319|ref|YP_002307555.1| - 0.12 12.4 0.0 0.25 11.3 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF1883) ASCH PF04266.14 gi|212224320|ref|YP_002307556.1| - 4.2e-19 69.1 0.1 7.6e-19 68.3 0.0 1.4 2 0 0 2 2 2 1 ASCH domain RHH_1 PF01402.21 gi|212224320|ref|YP_002307556.1| - 0.057 13.4 3.5 0.26 11.3 0.6 2.7 2 1 0 2 2 2 0 Ribbon-helix-helix protein, copG family HupF_HypC PF01455.18 gi|212224320|ref|YP_002307556.1| - 0.14 12.3 0.0 0.25 11.5 0.0 1.5 1 0 0 1 1 1 0 HupF/HypC family ASCH PF04266.14 gi|212224321|ref|YP_002307557.1| - 4.3e-14 53.0 0.1 5e-14 52.8 0.1 1.1 1 0 0 1 1 1 1 ASCH domain DUF3850 PF12961.7 gi|212224321|ref|YP_002307557.1| - 0.03 14.4 0.1 0.078 13.0 0.1 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF3850) Class_IIIsignal PF04021.12 gi|212224322|ref|YP_002307558.1| - 3.3e-07 30.1 1.5 4.3e-07 29.7 1.5 1.2 1 0 0 1 1 1 1 Class III signal peptide Hormone_recep PF00104.30 gi|212224322|ref|YP_002307558.1| - 0.09 12.3 0.1 0.099 12.2 0.1 1.1 1 0 0 1 1 1 0 Ligand-binding domain of nuclear hormone receptor Arc_PepC PF06819.11 gi|212224323|ref|YP_002307559.1| - 2.1e-28 98.7 0.4 3.8e-28 97.8 0.4 1.4 1 0 0 1 1 1 1 Archaeal Peptidase A24 C-terminal Domain Peptidase_A24 PF01478.18 gi|212224323|ref|YP_002307559.1| - 2e-05 24.9 10.3 2e-05 24.9 10.3 2.6 3 0 0 3 3 3 1 Type IV leader peptidase family Arc_PepC_II PF06847.11 gi|212224323|ref|YP_002307559.1| - 0.00011 22.6 0.0 0.00054 20.4 0.0 2.3 1 0 0 1 1 1 1 Archaeal Peptidase A24 C-terminus Type II TSC22 PF01166.18 gi|212224323|ref|YP_002307559.1| - 0.091 13.1 0.2 0.23 11.8 0.2 1.6 1 0 0 1 1 1 0 TSC-22/dip/bun family HAD PF12710.7 gi|212224324|ref|YP_002307560.1| - 3.8e-20 73.1 0.0 4.6e-20 72.8 0.0 1.1 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|212224324|ref|YP_002307560.1| - 7.6e-17 62.3 0.0 4.8e-16 59.7 0.0 1.9 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.12 gi|212224324|ref|YP_002307560.1| - 3.3e-09 36.9 0.0 1.8e-06 27.9 0.1 3.0 2 1 1 3 3 3 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 gi|212224324|ref|YP_002307560.1| - 2.1e-06 28.0 0.0 1.2e-05 25.5 0.0 2.2 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase UMPH-1 PF05822.12 gi|212224324|ref|YP_002307560.1| - 0.0014 18.2 0.0 0.002 17.7 0.0 1.2 1 0 0 1 1 1 1 Pyrimidine 5'-nucleotidase (UMPH-1) Put_Phosphatase PF06888.12 gi|212224324|ref|YP_002307560.1| - 0.0049 16.3 0.0 0.021 14.3 0.0 1.8 1 1 0 1 1 1 1 Putative Phosphatase Trehalose_PPase PF02358.16 gi|212224324|ref|YP_002307560.1| - 0.15 11.2 0.0 0.34 10.0 0.0 1.6 2 0 0 2 2 2 0 Trehalose-phosphatase PCMT PF01135.19 gi|212224325|ref|YP_002307561.1| - 1.2e-67 227.7 0.0 1.5e-67 227.4 0.0 1.0 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_31 PF13847.6 gi|212224325|ref|YP_002307561.1| - 1.6e-10 41.0 0.0 2.6e-10 40.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|212224325|ref|YP_002307561.1| - 4.5e-08 33.7 0.0 7.1e-08 33.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|212224325|ref|YP_002307561.1| - 3.9e-06 26.8 0.0 6.8e-06 26.0 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|212224325|ref|YP_002307561.1| - 7.4e-06 26.5 0.0 3.1e-05 24.5 0.0 2.0 1 1 0 1 1 1 1 Methyltransferase domain CMAS PF02353.20 gi|212224325|ref|YP_002307561.1| - 9.6e-06 25.1 0.0 1.4e-05 24.5 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase RrnaAD PF00398.20 gi|212224325|ref|YP_002307561.1| - 2.1e-05 23.8 0.0 2.5e-05 23.5 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase PrmA PF06325.13 gi|212224325|ref|YP_002307561.1| - 2.1e-05 24.1 0.0 2.9e-05 23.6 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_18 PF12847.7 gi|212224325|ref|YP_002307561.1| - 3e-05 24.0 0.0 4.7e-05 23.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|212224325|ref|YP_002307561.1| - 6.4e-05 22.6 0.0 0.00016 21.2 0.0 1.6 2 0 0 2 2 2 1 Methyltransferase small domain Methyltransf_3 PF01596.17 gi|212224325|ref|YP_002307561.1| - 0.00037 19.7 0.0 0.00062 19.0 0.0 1.3 1 0 0 1 1 1 1 O-methyltransferase Met_10 PF02475.16 gi|212224325|ref|YP_002307561.1| - 0.0034 17.2 0.0 0.005 16.6 0.0 1.2 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_2 PF00891.18 gi|212224325|ref|YP_002307561.1| - 0.0061 15.9 0.0 0.0099 15.2 0.0 1.3 1 0 0 1 1 1 1 O-methyltransferase domain GCD14 PF08704.10 gi|212224325|ref|YP_002307561.1| - 0.01 15.5 0.0 0.014 15.1 0.0 1.2 1 0 0 1 1 1 0 tRNA methyltransferase complex GCD14 subunit UPF0020 PF01170.18 gi|212224325|ref|YP_002307561.1| - 0.025 14.3 0.0 0.064 12.9 0.0 1.5 1 1 1 2 2 2 0 Putative RNA methylase family UPF0020 Methyltransf_15 PF09445.10 gi|212224325|ref|YP_002307561.1| - 0.059 12.9 0.0 0.077 12.6 0.0 1.2 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase Methyltransf_16 PF10294.9 gi|212224325|ref|YP_002307561.1| - 0.062 13.0 0.0 0.088 12.5 0.0 1.2 1 0 0 1 1 1 0 Lysine methyltransferase Methyltransf_24 PF13578.6 gi|212224325|ref|YP_002307561.1| - 0.096 13.7 0.0 0.15 13.1 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain TrmK PF04816.12 gi|212224325|ref|YP_002307561.1| - 0.12 11.9 0.0 0.2 11.2 0.0 1.4 1 0 0 1 1 1 0 tRNA (adenine(22)-N(1))-methyltransferase POTRA PF07244.15 gi|212224325|ref|YP_002307561.1| - 0.13 12.8 0.0 0.37 11.4 0.0 1.8 2 0 0 2 2 1 0 Surface antigen variable number repeat DUF5305 PF17231.2 gi|212224326|ref|YP_002307562.1| - 0.0086 15.5 3.1 0.018 14.5 3.1 1.5 1 0 0 1 1 1 1 Family of unknown function (DUF5305) LolA_like PF17131.4 gi|212224326|ref|YP_002307562.1| - 0.21 11.3 0.6 7 6.3 0.0 2.5 2 0 0 2 2 2 0 Outer membrane lipoprotein-sorting protein T2SSF PF00482.23 gi|212224327|ref|YP_002307563.1| - 1.8e-16 60.2 2.0 2.3e-08 34.0 0.7 3.7 4 0 0 4 4 4 2 Type II secretion system (T2SS), protein F T2SSE PF00437.20 gi|212224328|ref|YP_002307564.1| - 5.2e-48 163.5 0.0 8.6e-48 162.8 0.0 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_29 PF13555.6 gi|212224328|ref|YP_002307564.1| - 0.0057 16.4 0.0 0.013 15.3 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain ABC_tran PF00005.27 gi|212224328|ref|YP_002307564.1| - 0.0063 17.0 0.0 0.078 13.5 0.0 2.3 2 0 0 2 2 2 1 ABC transporter AAA_16 PF13191.6 gi|212224328|ref|YP_002307564.1| - 0.03 14.7 0.1 0.29 11.5 0.0 2.3 2 1 0 2 2 2 0 AAA ATPase domain DUF3189 PF11385.8 gi|212224328|ref|YP_002307564.1| - 0.14 12.0 0.0 0.46 10.3 0.0 1.9 1 0 0 1 1 1 0 Protein of unknown function (DUF3189) Dynamin_N PF00350.23 gi|212224328|ref|YP_002307564.1| - 0.17 11.9 0.0 0.34 11.0 0.0 1.5 1 0 0 1 1 1 0 Dynamin family ATPase PF06745.13 gi|212224329|ref|YP_002307565.1| - 6e-18 65.0 0.0 8.1e-18 64.6 0.0 1.1 1 0 0 1 1 1 1 KaiC NACHT PF05729.12 gi|212224329|ref|YP_002307565.1| - 0.00024 21.1 0.1 0.0014 18.6 0.1 1.9 1 1 0 1 1 1 1 NACHT domain ELP6 PF09807.9 gi|212224329|ref|YP_002307565.1| - 0.0024 17.3 0.0 0.003 17.0 0.0 1.1 1 0 0 1 1 1 1 Elongation complex protein 6 AAA_25 PF13481.6 gi|212224329|ref|YP_002307565.1| - 0.017 14.7 0.0 0.31 10.6 0.0 2.3 2 0 0 2 2 2 0 AAA domain AAA_16 PF13191.6 gi|212224329|ref|YP_002307565.1| - 0.02 15.3 0.0 0.032 14.6 0.0 1.3 1 0 0 1 1 1 0 AAA ATPase domain TsaE PF02367.17 gi|212224329|ref|YP_002307565.1| - 0.029 14.4 0.0 0.049 13.6 0.0 1.3 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE Rad51 PF08423.11 gi|212224329|ref|YP_002307565.1| - 0.031 13.5 0.3 0.069 12.4 0.1 1.6 2 0 0 2 2 2 0 Rad51 Arch_flagellin PF01917.16 gi|212224330|ref|YP_002307566.1| - 4.2e-23 82.3 0.3 4.7e-23 82.2 0.3 1.0 1 0 0 1 1 1 1 Archaebacterial flagellin DUF4397 PF14344.6 gi|212224330|ref|YP_002307566.1| - 0.02 15.7 0.3 0.045 14.5 0.1 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4397) CARDB PF07705.11 gi|212224330|ref|YP_002307566.1| - 0.042 14.1 0.1 0.064 13.5 0.1 1.2 1 0 0 1 1 1 0 CARDB COX7a PF02238.15 gi|212224330|ref|YP_002307566.1| - 0.17 12.3 0.7 3.3 8.2 0.1 2.4 2 0 0 2 2 2 0 Cytochrome c oxidase subunit VII Arch_flagellin PF01917.16 gi|212224331|ref|YP_002307567.1| - 2e-06 28.1 1.6 1.2e-05 25.5 1.6 2.0 1 1 0 1 1 1 1 Archaebacterial flagellin Arch_fla_DE PF04659.13 gi|212224332|ref|YP_002307568.1| - 1.2e-29 102.0 0.0 6e-29 99.8 0.0 2.2 1 0 0 1 1 1 1 Archaeal flagella protein NPV_P10 PF05531.12 gi|212224332|ref|YP_002307568.1| - 0.0022 18.4 18.3 0.045 14.2 2.4 4.6 2 1 3 5 5 4 3 Nucleopolyhedrovirus P10 protein IFT57 PF10498.9 gi|212224332|ref|YP_002307568.1| - 0.0024 16.9 2.2 0.0024 16.9 2.2 2.9 1 1 2 3 3 2 1 Intra-flagellar transport protein 57 HSBP1 PF06825.12 gi|212224332|ref|YP_002307568.1| - 0.0055 16.5 10.2 1.2 9.0 0.0 5.8 5 1 1 6 6 6 1 Heat shock factor binding protein 1 DUF948 PF06103.11 gi|212224332|ref|YP_002307568.1| - 0.0081 16.4 11.5 0.18 12.1 0.7 3.7 4 0 0 4 4 3 2 Bacterial protein of unknown function (DUF948) MbeD_MobD PF04899.12 gi|212224332|ref|YP_002307568.1| - 0.0086 16.2 1.2 1.4 9.0 0.2 3.1 2 1 1 3 3 3 1 MbeD/MobD like Baculo_PEP_C PF04513.12 gi|212224332|ref|YP_002307568.1| - 0.01 15.9 8.5 0.19 11.8 1.2 2.9 2 1 1 3 3 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus XhlA PF10779.9 gi|212224332|ref|YP_002307568.1| - 0.024 14.8 25.0 0.3 11.3 7.2 4.9 3 2 1 4 4 4 0 Haemolysin XhlA TRPM_tetra PF16519.5 gi|212224332|ref|YP_002307568.1| - 0.026 14.6 19.5 0.2 11.8 5.1 4.8 4 1 1 5 5 5 0 Tetramerisation domain of TRPM DUF573 PF04504.14 gi|212224332|ref|YP_002307568.1| - 0.036 14.7 7.8 0.92 10.2 2.0 3.0 1 1 1 2 2 2 0 Protein of unknown function, DUF573 UCH PF00443.29 gi|212224332|ref|YP_002307568.1| - 0.055 12.9 0.5 0.071 12.6 0.5 1.3 1 0 0 1 1 1 0 Ubiquitin carboxyl-terminal hydrolase AAA_13 PF13166.6 gi|212224332|ref|YP_002307568.1| - 0.064 11.9 19.0 0.096 11.3 19.0 1.3 1 0 0 1 1 1 0 AAA domain FUSC PF04632.12 gi|212224332|ref|YP_002307568.1| - 0.22 10.0 4.4 0.42 9.1 4.4 1.5 1 0 0 1 1 1 0 Fusaric acid resistance protein family Utp8 PF10395.9 gi|212224332|ref|YP_002307568.1| - 0.43 9.0 10.4 0.56 8.6 10.4 1.2 1 0 0 1 1 1 0 Utp8 family DUF1664 PF07889.12 gi|212224332|ref|YP_002307568.1| - 0.44 10.6 17.7 0.7 9.9 4.1 3.1 2 1 1 3 3 2 0 Protein of unknown function (DUF1664) Allexi_40kDa PF05549.11 gi|212224332|ref|YP_002307568.1| - 0.45 10.0 10.5 1.1 8.8 1.9 2.6 1 1 1 2 2 2 0 Allexivirus 40kDa protein DUF2200 PF09966.9 gi|212224332|ref|YP_002307568.1| - 0.75 10.0 9.0 12 6.1 2.3 3.8 2 1 1 3 3 3 0 Uncharacterized protein conserved in bacteria (DUF2200) Exonuc_VII_L PF02601.15 gi|212224332|ref|YP_002307568.1| - 0.91 9.0 15.2 7.1 6.1 15.3 2.1 1 1 0 1 1 1 0 Exonuclease VII, large subunit Occludin_ELL PF07303.13 gi|212224332|ref|YP_002307568.1| - 1.1 10.0 17.7 0.3 11.8 5.7 3.2 2 1 3 5 5 4 0 Occludin homology domain FemAB PF02388.16 gi|212224332|ref|YP_002307568.1| - 1.2 8.0 18.1 0.078 11.8 2.3 2.2 1 1 1 2 2 2 0 FemAB family SLATT_6 PF18169.1 gi|212224332|ref|YP_002307568.1| - 1.3 8.6 6.4 5.5 6.5 0.8 2.5 2 0 0 2 2 2 0 SMODS and SLOG-associating 2TM effector domain 6 DUF4191 PF13829.6 gi|212224332|ref|YP_002307568.1| - 2.5 7.4 6.9 0.96 8.8 2.9 2.1 1 1 0 2 2 2 0 Domain of unknown function (DUF4191) FliS PF02561.14 gi|212224332|ref|YP_002307568.1| - 2.8 8.2 14.1 0.24 11.7 6.9 2.8 3 1 1 4 4 2 0 Flagellar protein FliS BPS1 PF05633.11 gi|212224332|ref|YP_002307568.1| - 3.2 6.6 15.6 0.55 9.2 2.9 2.6 1 1 1 2 2 2 0 Protein BYPASS1-related Strumpellin PF10266.9 gi|212224332|ref|YP_002307568.1| - 3.7 5.1 11.3 4.9 4.7 11.3 1.1 1 0 0 1 1 1 0 Hereditary spastic paraplegia protein strumpellin PMC2NT PF08066.12 gi|212224332|ref|YP_002307568.1| - 4.3 8.1 7.4 63 4.4 5.9 2.9 1 1 1 2 2 2 0 PMC2NT (NUC016) domain ALMT PF11744.8 gi|212224332|ref|YP_002307568.1| - 4.3 6.1 8.7 6.3 5.5 8.7 1.2 1 0 0 1 1 1 0 Aluminium activated malate transporter DUF4735 PF15882.5 gi|212224332|ref|YP_002307568.1| - 5.1 6.4 5.4 5.7 6.3 1.0 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF4735) LMBR1 PF04791.16 gi|212224332|ref|YP_002307568.1| - 6.4 5.6 10.0 3.5 6.4 8.0 1.7 2 0 0 2 2 2 0 LMBR1-like membrane protein DUF4363 PF14276.6 gi|212224332|ref|YP_002307568.1| - 6.5 6.9 22.0 0.94 9.6 0.8 3.9 2 1 2 4 4 3 0 Domain of unknown function (DUF4363) Alpha-mann_mid PF09261.11 gi|212224332|ref|YP_002307568.1| - 6.9 6.9 8.1 2.2 8.5 1.2 3.0 1 1 2 3 3 3 0 Alpha mannosidase middle domain MtrG PF04210.13 gi|212224332|ref|YP_002307568.1| - 7.4 6.5 13.2 15 5.5 0.6 4.7 4 1 1 5 5 4 0 Tetrahydromethanopterin S-methyltransferase, subunit G V_ATPase_I PF01496.19 gi|212224332|ref|YP_002307568.1| - 8.7 4.1 18.0 12 3.7 16.6 1.7 1 1 0 1 1 1 0 V-type ATPase 116kDa subunit family PspA_IM30 PF04012.12 gi|212224332|ref|YP_002307568.1| - 9.8 5.7 35.8 2 8.0 24.1 2.6 2 1 1 3 3 3 0 PspA/IM30 family Atg14 PF10186.9 gi|212224332|ref|YP_002307568.1| - 9.9 5.1 20.6 1 8.4 5.6 2.2 1 1 1 2 2 2 0 Vacuolar sorting 38 and autophagy-related subunit 14 FlaC_arch PF05377.11 gi|212224333|ref|YP_002307569.1| - 1.6e-21 76.4 13.4 2.5e-20 72.6 2.6 3.1 3 1 0 3 3 2 2 Flagella accessory protein C (FlaC) EzrA PF06160.12 gi|212224333|ref|YP_002307569.1| - 4.2e-06 25.2 9.9 0.00013 20.3 3.4 2.1 1 1 1 2 2 2 2 Septation ring formation regulator, EzrA Sec34 PF04136.15 gi|212224333|ref|YP_002307569.1| - 4.8e-05 23.3 2.3 0.0002 21.2 0.3 2.0 1 1 1 2 2 2 1 Sec34-like family TPR_MLP1_2 PF07926.12 gi|212224333|ref|YP_002307569.1| - 0.00013 22.0 4.1 0.18 11.8 0.5 2.2 1 1 1 2 2 2 2 TPR/MLP1/MLP2-like protein LPP PF04728.13 gi|212224333|ref|YP_002307569.1| - 0.00015 22.0 4.9 0.72 10.3 0.3 3.5 1 1 0 2 2 2 1 Lipoprotein leucine-zipper BLOC1_2 PF10046.9 gi|212224333|ref|YP_002307569.1| - 0.00017 21.9 10.8 0.015 15.6 4.7 2.4 1 1 1 2 2 2 2 Biogenesis of lysosome-related organelles complex-1 subunit 2 Seryl_tRNA_N PF02403.22 gi|212224333|ref|YP_002307569.1| - 0.00045 20.4 12.9 0.098 12.9 5.0 2.2 1 1 1 2 2 2 2 Seryl-tRNA synthetase N-terminal domain DUF1664 PF07889.12 gi|212224333|ref|YP_002307569.1| - 0.00069 19.6 10.4 0.048 13.7 4.9 2.2 1 1 1 2 2 2 1 Protein of unknown function (DUF1664) Spc7 PF08317.11 gi|212224333|ref|YP_002307569.1| - 0.00089 18.2 11.2 0.047 12.6 5.5 2.0 1 1 1 2 2 2 2 Spc7 kinetochore protein Laminin_II PF06009.12 gi|212224333|ref|YP_002307569.1| - 0.0013 18.8 6.1 0.0019 18.2 6.1 1.2 1 0 0 1 1 1 1 Laminin Domain II Phlebovirus_NSM PF07246.11 gi|212224333|ref|YP_002307569.1| - 0.0015 18.0 6.4 0.16 11.3 2.2 2.0 1 1 1 2 2 2 2 Phlebovirus nonstructural protein NS-M Nsp1_C PF05064.13 gi|212224333|ref|YP_002307569.1| - 0.0015 18.3 1.9 0.0015 18.3 1.9 2.2 1 1 1 2 2 2 1 Nsp1-like C-terminal region DUF2353 PF09789.9 gi|212224333|ref|YP_002307569.1| - 0.0018 17.7 5.7 0.0024 17.3 5.7 1.2 1 0 0 1 1 1 1 Uncharacterized coiled-coil protein (DUF2353) CENP-F_leu_zip PF10473.9 gi|212224333|ref|YP_002307569.1| - 0.0028 17.7 14.1 0.11 12.5 7.3 2.1 1 1 1 2 2 2 2 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Baculo_PEP_C PF04513.12 gi|212224333|ref|YP_002307569.1| - 0.0032 17.5 2.8 0.0093 16.0 2.8 1.7 1 1 0 1 1 1 1 Baculovirus polyhedron envelope protein, PEP, C terminus bZIP_1 PF00170.21 gi|212224333|ref|YP_002307569.1| - 0.0035 17.4 10.6 0.38 10.9 0.6 3.2 2 1 1 3 3 3 1 bZIP transcription factor TMPIT PF07851.13 gi|212224333|ref|YP_002307569.1| - 0.0038 16.5 3.0 0.0055 16.0 3.0 1.3 1 0 0 1 1 1 1 TMPIT-like protein MAD PF05557.13 gi|212224333|ref|YP_002307569.1| - 0.0044 15.4 7.8 0.0077 14.7 7.8 1.4 1 0 0 1 1 1 1 Mitotic checkpoint protein Fib_alpha PF08702.10 gi|212224333|ref|YP_002307569.1| - 0.0048 17.1 12.5 0.011 15.9 3.8 2.1 1 1 1 2 2 2 1 Fibrinogen alpha/beta chain family DUF4618 PF15397.6 gi|212224333|ref|YP_002307569.1| - 0.0051 16.3 11.1 0.22 10.9 0.7 2.2 1 1 1 2 2 2 2 Domain of unknown function (DUF4618) WEMBL PF05701.11 gi|212224333|ref|YP_002307569.1| - 0.0059 15.4 8.0 0.012 14.3 8.0 1.5 1 1 0 1 1 1 1 Weak chloroplast movement under blue light SKA2 PF16740.5 gi|212224333|ref|YP_002307569.1| - 0.0061 16.3 4.1 0.0061 16.3 4.1 2.1 1 1 1 2 2 2 1 Spindle and kinetochore-associated protein 2 Prefoldin_2 PF01920.20 gi|212224333|ref|YP_002307569.1| - 0.0064 16.4 12.1 0.07 13.1 2.0 2.9 1 1 0 2 2 2 1 Prefoldin subunit Tektin PF03148.14 gi|212224333|ref|YP_002307569.1| - 0.007 15.2 12.4 0.05 12.3 8.0 2.0 1 1 1 2 2 2 2 Tektin family DUF948 PF06103.11 gi|212224333|ref|YP_002307569.1| - 0.0088 16.3 1.5 0.08 13.2 1.4 2.2 1 1 0 1 1 1 1 Bacterial protein of unknown function (DUF948) HMMR_N PF15905.5 gi|212224333|ref|YP_002307569.1| - 0.009 15.5 11.5 0.013 15.0 11.5 1.2 1 0 0 1 1 1 1 Hyaluronan mediated motility receptor N-terminal Cnn_1N PF07989.11 gi|212224333|ref|YP_002307569.1| - 0.0094 16.1 11.7 0.088 13.0 0.2 2.8 2 1 0 2 2 2 1 Centrosomin N-terminal motif 1 PhaP_Bmeg PF09602.10 gi|212224333|ref|YP_002307569.1| - 0.0097 15.9 1.7 0.015 15.3 1.4 1.4 1 1 0 1 1 1 1 Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg) GAS PF13851.6 gi|212224333|ref|YP_002307569.1| - 0.0099 15.2 9.6 0.025 13.9 9.7 1.6 1 1 0 1 1 1 1 Growth-arrest specific micro-tubule binding Pterin_bind PF00809.22 gi|212224333|ref|YP_002307569.1| - 0.01 15.6 0.6 0.018 14.7 0.6 1.4 1 0 0 1 1 1 0 Pterin binding enzyme DASH_Dam1 PF08653.10 gi|212224333|ref|YP_002307569.1| - 0.011 15.5 2.8 1.6 8.6 0.1 3.1 3 0 0 3 3 3 0 DASH complex subunit Dam1 Filament PF00038.21 gi|212224333|ref|YP_002307569.1| - 0.012 15.2 11.1 0.31 10.6 5.8 2.0 1 1 0 1 1 1 0 Intermediate filament protein CALCOCO1 PF07888.11 gi|212224333|ref|YP_002307569.1| - 0.014 14.3 7.2 0.02 13.8 7.2 1.2 1 0 0 1 1 1 0 Calcium binding and coiled-coil domain (CALCOCO1) like KinB_sensor PF16767.5 gi|212224333|ref|YP_002307569.1| - 0.015 15.8 2.2 0.12 12.9 0.3 2.2 1 1 1 2 2 2 0 Sensor domain of alginate biosynthesis sensor protein KinB FPP PF05911.11 gi|212224333|ref|YP_002307569.1| - 0.017 13.4 6.5 0.02 13.1 6.5 1.0 1 0 0 1 1 1 0 Filament-like plant protein, long coiled-coil Phage_GPO PF05929.11 gi|212224333|ref|YP_002307569.1| - 0.017 14.7 3.6 0.051 13.2 3.6 1.6 1 1 0 1 1 1 0 Phage capsid scaffolding protein (GPO) serine peptidase Nmad5 PF18757.1 gi|212224333|ref|YP_002307569.1| - 0.019 15.2 3.9 0.05 13.8 3.9 1.9 1 1 0 1 1 1 0 Nucleotide modification associated domain 5 Fez1 PF06818.15 gi|212224333|ref|YP_002307569.1| - 0.019 15.4 6.3 0.034 14.6 6.4 1.3 1 1 0 1 1 1 0 Fez1 GCN5L1 PF06320.13 gi|212224333|ref|YP_002307569.1| - 0.019 15.1 2.1 0.48 10.6 0.2 2.1 1 1 1 2 2 2 0 GCN5-like protein 1 (GCN5L1) DUF812 PF05667.11 gi|212224333|ref|YP_002307569.1| - 0.024 13.5 13.3 0.07 12.0 13.2 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF812) PspA_IM30 PF04012.12 gi|212224333|ref|YP_002307569.1| - 0.025 14.2 6.9 0.32 10.6 0.8 2.5 1 1 1 2 2 2 0 PspA/IM30 family AAA_13 PF13166.6 gi|212224333|ref|YP_002307569.1| - 0.026 13.2 8.6 0.049 12.3 8.6 1.4 1 1 0 1 1 1 0 AAA domain KASH_CCD PF14662.6 gi|212224333|ref|YP_002307569.1| - 0.027 14.3 12.3 0.067 13.0 12.6 1.5 1 1 0 1 1 1 0 Coiled-coil region of CCDC155 or KASH DUF2203 PF09969.9 gi|212224333|ref|YP_002307569.1| - 0.027 15.2 6.8 0.13 13.0 0.6 2.2 1 1 1 2 2 2 0 Uncharacterized conserved protein (DUF2203) APG17 PF04108.12 gi|212224333|ref|YP_002307569.1| - 0.03 13.5 4.1 0.039 13.1 4.1 1.2 1 0 0 1 1 1 0 Autophagy protein Apg17 HemX PF04375.14 gi|212224333|ref|YP_002307569.1| - 0.03 13.6 3.7 0.31 10.3 0.4 2.0 1 1 1 2 2 2 0 HemX, putative uroporphyrinogen-III C-methyltransferase DUF2046 PF09755.9 gi|212224333|ref|YP_002307569.1| - 0.033 13.4 12.0 2.4 7.3 12.0 2.1 1 1 0 1 1 1 0 Uncharacterized conserved protein H4 (DUF2046) HIP1_clath_bdg PF16515.5 gi|212224333|ref|YP_002307569.1| - 0.035 14.7 5.9 1.9 9.2 0.2 2.2 1 1 1 2 2 2 0 Clathrin-binding domain of Huntingtin-interacting protein 1 RasGAP_C PF03836.15 gi|212224333|ref|YP_002307569.1| - 0.037 14.2 3.4 0.041 14.0 1.9 1.7 1 1 0 1 1 1 0 RasGAP C-terminus DUF4140 PF13600.6 gi|212224333|ref|YP_002307569.1| - 0.037 14.4 12.5 0.77 10.2 0.5 3.0 1 1 1 2 2 2 0 N-terminal domain of unknown function (DUF4140) Med9 PF07544.13 gi|212224333|ref|YP_002307569.1| - 0.039 14.0 12.3 0.89 9.7 0.4 2.9 1 1 2 3 3 3 0 RNA polymerase II transcription mediator complex subunit 9 Atg14 PF10186.9 gi|212224333|ref|YP_002307569.1| - 0.042 12.9 12.3 0.028 13.5 5.8 2.0 1 1 1 2 2 2 0 Vacuolar sorting 38 and autophagy-related subunit 14 DUF2730 PF10805.8 gi|212224333|ref|YP_002307569.1| - 0.049 13.7 8.0 1.5 9.0 2.9 2.6 1 1 1 2 2 2 0 Protein of unknown function (DUF2730) IFT57 PF10498.9 gi|212224333|ref|YP_002307569.1| - 0.051 12.5 10.2 0.24 10.3 8.9 1.8 1 1 1 2 2 2 0 Intra-flagellar transport protein 57 TMF_DNA_bd PF12329.8 gi|212224333|ref|YP_002307569.1| - 0.052 13.6 14.2 1 9.4 0.9 2.4 2 0 0 2 2 2 0 TATA element modulatory factor 1 DNA binding Prefoldin PF02996.17 gi|212224333|ref|YP_002307569.1| - 0.052 13.5 11.9 0.21 11.5 1.3 3.1 2 1 1 3 3 3 0 Prefoldin subunit Occludin_ELL PF07303.13 gi|212224333|ref|YP_002307569.1| - 0.053 14.3 7.9 0.057 14.1 2.4 2.2 1 1 1 2 2 2 0 Occludin homology domain DUF4200 PF13863.6 gi|212224333|ref|YP_002307569.1| - 0.057 13.8 13.8 1.2 9.6 13.1 2.6 1 1 0 1 1 1 0 Domain of unknown function (DUF4200) CorA PF01544.18 gi|212224333|ref|YP_002307569.1| - 0.061 12.6 5.2 0.09 12.1 5.2 1.4 1 0 0 1 1 1 0 CorA-like Mg2+ transporter protein Mit_ribos_Mrp51 PF11709.8 gi|212224333|ref|YP_002307569.1| - 0.062 12.9 2.0 0.071 12.7 2.0 1.1 1 0 0 1 1 1 0 Mitochondrial ribosomal protein subunit Phage_GP20 PF06810.11 gi|212224333|ref|YP_002307569.1| - 0.067 13.0 8.7 5.4 6.8 8.6 2.3 1 1 0 1 1 1 0 Phage minor structural protein GP20 ADIP PF11559.8 gi|212224333|ref|YP_002307569.1| - 0.071 13.2 8.1 0.28 11.2 2.3 2.1 1 1 1 2 2 2 0 Afadin- and alpha -actinin-Binding DivIC PF04977.15 gi|212224333|ref|YP_002307569.1| - 0.079 12.7 14.0 0.85 9.4 2.1 2.9 1 1 2 3 3 3 0 Septum formation initiator TssO PF17561.2 gi|212224333|ref|YP_002307569.1| - 0.082 13.0 15.2 0.7 10.0 14.8 2.5 1 1 0 1 1 1 0 Type VI secretion system, TssO DUF5082 PF16888.5 gi|212224333|ref|YP_002307569.1| - 0.089 13.1 13.6 2.1 8.6 1.1 2.9 1 1 1 3 3 3 0 Domain of unknown function (DUF5082) CdvA PF18822.1 gi|212224333|ref|YP_002307569.1| - 0.09 12.6 14.2 0.28 11.0 9.1 2.6 1 1 1 2 2 2 0 CdvA-like coiled-coil domain Fmp27_WPPW PF10359.9 gi|212224333|ref|YP_002307569.1| - 0.1 11.5 7.9 0.46 9.3 8.5 1.8 1 1 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain DUF4407 PF14362.6 gi|212224333|ref|YP_002307569.1| - 0.1 11.9 6.8 0.84 8.9 6.9 1.9 1 1 0 1 1 1 0 Domain of unknown function (DUF4407) Bap31_Bap29_C PF18035.1 gi|212224333|ref|YP_002307569.1| - 0.11 12.6 8.1 1.1 9.3 0.4 2.7 2 0 0 2 2 2 0 Bap31/Bap29 cytoplasmic coiled-coil domain DHR10 PF18595.1 gi|212224333|ref|YP_002307569.1| - 0.11 12.6 10.6 0.26 11.4 0.5 2.1 1 1 1 2 2 2 0 Designed helical repeat protein 10 domain LXG PF04740.12 gi|212224333|ref|YP_002307569.1| - 0.12 12.1 9.7 0.73 9.5 4.8 2.2 1 1 0 2 2 2 0 LXG domain of WXG superfamily Prominin PF05478.11 gi|212224333|ref|YP_002307569.1| - 0.13 10.2 5.8 0.47 8.4 5.9 1.6 1 1 0 1 1 1 0 Prominin Bacillus_HBL PF05791.11 gi|212224333|ref|YP_002307569.1| - 0.13 12.1 7.6 0.15 11.9 4.2 1.9 1 1 1 2 2 2 0 Bacillus haemolytic enterotoxin (HBL) Ferritin PF00210.24 gi|212224333|ref|YP_002307569.1| - 0.13 12.2 4.2 0.23 11.4 4.2 1.5 1 1 0 1 1 1 0 Ferritin-like domain Spc24 PF08286.11 gi|212224333|ref|YP_002307569.1| - 0.14 12.4 7.2 2.8 8.2 0.4 2.5 1 1 1 2 2 2 0 Spc24 subunit of Ndc80 GrpE PF01025.19 gi|212224333|ref|YP_002307569.1| - 0.14 11.8 11.1 1.9 8.1 4.6 2.1 1 1 1 2 2 2 0 GrpE YabA PF06156.13 gi|212224333|ref|YP_002307569.1| - 0.14 12.8 10.1 32 5.2 9.9 2.7 1 1 0 1 1 1 0 Initiation control protein YabA FapA PF03961.13 gi|212224333|ref|YP_002307569.1| - 0.15 10.6 12.7 3.1 6.3 12.7 2.0 1 1 0 1 1 1 0 Flagellar Assembly Protein A Cep57_MT_bd PF06657.13 gi|212224333|ref|YP_002307569.1| - 0.2 12.1 8.8 0.3 11.6 1.3 2.7 1 1 1 3 3 3 0 Centrosome microtubule-binding domain of Cep57 UPF0449 PF15136.6 gi|212224333|ref|YP_002307569.1| - 0.21 12.1 5.5 2.3 8.7 1.1 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0449 ACR_tran PF00873.19 gi|212224333|ref|YP_002307569.1| - 0.21 9.2 2.2 0.25 9.0 2.2 1.0 1 0 0 1 1 1 0 AcrB/AcrD/AcrF family USP8_interact PF08941.10 gi|212224333|ref|YP_002307569.1| - 0.22 11.3 4.3 3.9 7.2 1.9 2.1 1 1 1 2 2 2 0 USP8 interacting MSA-2c PF12238.8 gi|212224333|ref|YP_002307569.1| - 0.22 11.5 3.1 0.27 11.2 2.7 1.3 1 1 0 1 1 1 0 Merozoite surface antigen 2c DUF5344 PF17279.2 gi|212224333|ref|YP_002307569.1| - 0.24 12.0 5.9 1.6 9.4 0.2 2.9 2 1 1 3 3 2 0 Family of unknown function (DUF5344) Vps54_N PF10475.9 gi|212224333|ref|YP_002307569.1| - 0.24 10.6 6.4 0.059 12.6 1.5 1.8 1 1 1 2 2 2 0 Vacuolar-sorting protein 54, of GARP complex FlxA PF14282.6 gi|212224333|ref|YP_002307569.1| - 0.25 11.4 15.8 0.082 12.9 3.3 3.0 1 1 2 3 3 3 0 FlxA-like protein COG5 PF10392.9 gi|212224333|ref|YP_002307569.1| - 0.28 11.4 3.6 3.4 7.9 0.7 2.3 1 1 1 2 2 2 0 Golgi transport complex subunit 5 PRKG1_interact PF15898.5 gi|212224333|ref|YP_002307569.1| - 0.28 12.1 9.7 3 8.8 8.3 2.5 1 1 1 2 2 2 0 cGMP-dependent protein kinase interacting domain Lebercilin PF15619.6 gi|212224333|ref|YP_002307569.1| - 0.29 10.8 10.6 21 4.7 10.8 2.2 1 1 0 1 1 1 0 Ciliary protein causing Leber congenital amaurosis disease BRE1 PF08647.11 gi|212224333|ref|YP_002307569.1| - 0.3 11.2 6.6 0.66 10.1 4.9 2.0 1 1 0 1 1 1 0 BRE1 E3 ubiquitin ligase NPV_P10 PF05531.12 gi|212224333|ref|YP_002307569.1| - 0.3 11.6 8.3 0.79 10.2 1.4 2.4 1 1 1 2 2 2 0 Nucleopolyhedrovirus P10 protein Spectrin PF00435.21 gi|212224333|ref|YP_002307569.1| - 0.31 11.5 8.4 4.4 7.9 2.6 2.3 1 1 0 2 2 2 0 Spectrin repeat WXG100 PF06013.12 gi|212224333|ref|YP_002307569.1| - 0.31 11.3 1.9 2.5 8.4 0.7 2.7 1 1 1 2 2 1 0 Proteins of 100 residues with WXG TolA_bind_tri PF16331.5 gi|212224333|ref|YP_002307569.1| - 0.32 11.1 11.7 1.7 8.8 1.1 2.9 1 1 0 2 2 2 0 TolA binding protein trimerisation MCPsignal PF00015.21 gi|212224333|ref|YP_002307569.1| - 0.33 10.7 2.6 1 9.2 1.1 1.8 1 1 0 1 1 1 0 Methyl-accepting chemotaxis protein (MCP) signalling domain DUF1843 PF08898.10 gi|212224333|ref|YP_002307569.1| - 0.33 11.5 5.1 0.38 11.3 0.2 2.9 3 0 0 3 3 3 0 Domain of unknown function (DUF1843) THOC7 PF05615.13 gi|212224333|ref|YP_002307569.1| - 0.33 11.2 10.0 1.6 9.0 10.1 2.0 1 1 0 1 1 1 0 Tho complex subunit 7 DUF3450 PF11932.8 gi|212224333|ref|YP_002307569.1| - 0.34 10.2 9.3 1.4 8.1 4.7 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF3450) VSG_B PF13206.6 gi|212224333|ref|YP_002307569.1| - 0.35 10.1 2.4 0.28 10.4 0.4 1.7 2 0 0 2 2 2 0 Trypanosomal VSG domain P4Ha_N PF08336.11 gi|212224333|ref|YP_002307569.1| - 0.35 10.9 6.5 0.53 10.3 1.2 2.2 1 1 0 2 2 2 0 Prolyl 4-Hydroxylase alpha-subunit, N-terminal region ATG16 PF08614.11 gi|212224333|ref|YP_002307569.1| - 0.37 11.0 10.0 11 6.2 10.5 2.0 1 1 1 2 2 2 0 Autophagy protein 16 (ATG16) DUF241 PF03087.14 gi|212224333|ref|YP_002307569.1| - 0.4 10.5 6.5 0.48 10.2 1.3 2.2 1 1 1 2 2 2 0 Arabidopsis protein of unknown function V_ATPase_I PF01496.19 gi|212224333|ref|YP_002307569.1| - 0.43 8.4 8.8 1.8 6.4 0.8 1.9 1 1 1 2 2 2 0 V-type ATPase 116kDa subunit family Hemagglutinin PF00509.18 gi|212224333|ref|YP_002307569.1| - 0.45 8.8 8.7 1.3 7.3 0.6 2.0 1 1 1 2 2 2 0 Haemagglutinin DUF2312 PF10073.9 gi|212224333|ref|YP_002307569.1| - 0.46 10.2 12.4 2.1 8.0 2.9 3.4 2 1 1 3 3 3 0 Uncharacterized protein conserved in bacteria (DUF2312) TraF_2 PF13729.6 gi|212224333|ref|YP_002307569.1| - 0.47 9.8 4.0 0.54 9.6 3.5 1.3 1 1 0 1 1 1 0 F plasmid transfer operon, TraF, protein Vps53_N PF04100.12 gi|212224333|ref|YP_002307569.1| - 0.48 9.3 9.4 0.61 9.0 8.1 1.6 1 1 1 2 2 2 0 Vps53-like, N-terminal GreA_GreB_N PF03449.15 gi|212224333|ref|YP_002307569.1| - 0.55 10.4 10.4 2.7 8.2 0.1 3.1 3 0 0 3 3 3 0 Transcription elongation factor, N-terminal PI3K_P85_iSH2 PF16454.5 gi|212224333|ref|YP_002307569.1| - 0.57 9.8 12.7 0.94 9.1 7.9 2.1 1 1 1 2 2 2 0 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain ATPase PF06745.13 gi|212224333|ref|YP_002307569.1| - 0.6 9.4 7.2 0.4 10.0 4.8 1.7 1 1 1 2 2 2 0 KaiC SMC_Nse1 PF07574.13 gi|212224333|ref|YP_002307569.1| - 0.6 10.0 5.5 2.5 8.0 0.2 2.1 1 1 1 2 2 2 0 Nse1 non-SMC component of SMC5-6 complex APG6_N PF17675.1 gi|212224333|ref|YP_002307569.1| - 0.65 10.5 15.2 0.32 11.5 4.0 2.2 1 1 1 2 2 2 0 Apg6 coiled-coil region TMF_TATA_bd PF12325.8 gi|212224333|ref|YP_002307569.1| - 0.65 10.2 12.9 2.8 8.2 7.2 2.2 1 1 0 2 2 2 0 TATA element modulatory factor 1 TATA binding DUF4988 PF16378.5 gi|212224333|ref|YP_002307569.1| - 0.66 9.6 6.7 4.1 7.0 1.5 2.5 2 1 0 2 2 2 0 Domain of unknown function ISG65-75 PF11727.8 gi|212224333|ref|YP_002307569.1| - 0.67 9.1 2.2 0.85 8.8 1.6 1.5 1 1 1 2 2 1 0 Invariant surface glycoprotein IFT20 PF14931.6 gi|212224333|ref|YP_002307569.1| - 0.71 10.1 11.0 0.077 13.2 2.4 2.2 1 1 1 2 2 2 0 Intraflagellar transport complex B, subunit 20 RPW8 PF05659.11 gi|212224333|ref|YP_002307569.1| - 0.8 9.4 10.7 3.2 7.5 3.8 2.2 1 1 1 2 2 2 0 Arabidopsis broad-spectrum mildew resistance protein RPW8 DUF16 PF01519.16 gi|212224333|ref|YP_002307569.1| - 0.87 10.1 11.0 4.8 7.7 9.5 2.1 1 1 1 2 2 2 0 Protein of unknown function DUF16 DUF4349 PF14257.6 gi|212224333|ref|YP_002307569.1| - 0.88 9.0 7.2 2.7 7.4 3.7 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4349) HalX PF08663.10 gi|212224333|ref|YP_002307569.1| - 1.1 9.7 9.0 27 5.2 0.1 3.3 2 1 1 3 3 3 0 HalX domain Ax_dynein_light PF10211.9 gi|212224333|ref|YP_002307569.1| - 1.2 9.1 12.5 5 7.0 1.1 2.2 1 1 1 2 2 2 0 Axonemal dynein light chain bZIP_2 PF07716.15 gi|212224333|ref|YP_002307569.1| - 1.3 9.2 14.1 13 5.9 1.3 3.4 3 0 0 3 3 3 0 Basic region leucine zipper Enkurin PF13864.6 gi|212224333|ref|YP_002307569.1| - 1.3 9.5 10.3 1 9.8 4.9 2.1 2 0 0 2 2 2 0 Calmodulin-binding 5_nucleotid PF05761.14 gi|212224333|ref|YP_002307569.1| - 1.4 7.8 6.4 3.8 6.3 6.4 1.7 1 1 0 1 1 1 0 5' nucleotidase family BST2 PF16716.5 gi|212224333|ref|YP_002307569.1| - 1.4 9.6 11.2 4.2 8.0 0.7 3.0 1 1 2 3 3 3 0 Bone marrow stromal antigen 2 KxDL PF10241.9 gi|212224333|ref|YP_002307569.1| - 1.5 9.1 6.6 6.4 7.1 0.9 2.5 1 1 2 3 3 3 0 Uncharacterized conserved protein DUF1640 PF07798.11 gi|212224333|ref|YP_002307569.1| - 1.5 8.8 11.8 6.7 6.7 11.7 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF1640) DUF2205 PF10224.9 gi|212224333|ref|YP_002307569.1| - 1.7 8.7 12.0 7.2 6.7 4.8 2.2 1 1 1 2 2 2 0 Short coiled-coil protein SseC PF04888.12 gi|212224333|ref|YP_002307569.1| - 1.8 8.1 3.9 1.1 8.8 0.8 1.9 1 1 1 2 2 2 0 Secretion system effector C (SseC) like family DUF1192 PF06698.11 gi|212224333|ref|YP_002307569.1| - 1.8 8.7 13.8 2.9 8.0 0.2 4.0 2 1 2 4 4 4 0 Protein of unknown function (DUF1192) XhlA PF10779.9 gi|212224333|ref|YP_002307569.1| - 1.9 8.7 12.9 2.3 8.5 7.9 2.6 2 1 0 2 2 2 0 Haemolysin XhlA LRRFIP PF09738.9 gi|212224333|ref|YP_002307569.1| - 2.1 7.7 13.5 34 3.8 13.5 2.0 1 1 0 1 1 1 0 LRRFIP family Flagellin_N PF00669.20 gi|212224333|ref|YP_002307569.1| - 2.2 8.4 4.2 16 5.6 1.2 2.6 2 1 0 2 2 2 0 Bacterial flagellin N-terminal helical region PRP1_N PF06424.12 gi|212224333|ref|YP_002307569.1| - 2.2 8.7 9.3 0.64 10.4 3.4 2.0 1 1 1 2 2 2 0 PRP1 splicing factor, N-terminal Rx_N PF18052.1 gi|212224333|ref|YP_002307569.1| - 2.2 8.6 9.1 8.5 6.7 4.8 2.2 1 1 1 2 2 2 0 Rx N-terminal domain Cauli_AT PF03233.13 gi|212224333|ref|YP_002307569.1| - 2.8 7.9 12.8 2.3 8.1 5.6 2.1 1 1 1 2 2 2 0 Aphid transmission protein FAM76 PF16046.5 gi|212224333|ref|YP_002307569.1| - 3.7 6.8 6.3 5 6.4 6.3 1.2 1 0 0 1 1 1 0 FAM76 protein Swi5 PF07061.11 gi|212224333|ref|YP_002307569.1| - 4.2 7.5 9.3 18 5.5 2.9 2.8 1 1 1 2 2 2 0 Swi5 MIP-T3_C PF17749.1 gi|212224333|ref|YP_002307569.1| - 4.2 7.3 16.4 15 5.5 16.4 2.0 1 1 0 1 1 1 0 Microtubule-binding protein MIP-T3 C-terminal region DUF4094 PF13334.6 gi|212224333|ref|YP_002307569.1| - 4.2 7.8 9.5 26 5.3 0.3 2.8 1 1 1 2 2 2 0 Domain of unknown function (DUF4094) EMP24_GP25L PF01105.24 gi|212224333|ref|YP_002307569.1| - 4.3 7.3 8.5 1.5 8.7 3.2 2.0 1 1 1 2 2 2 0 emp24/gp25L/p24 family/GOLD MetOD2 PF18548.1 gi|212224333|ref|YP_002307569.1| - 4.5 7.4 10.8 0.37 10.9 1.9 2.2 1 1 0 2 2 2 0 Metanogen output domain 2 Fzo_mitofusin PF04799.13 gi|212224333|ref|YP_002307569.1| - 4.8 6.7 8.7 18 4.9 2.5 2.7 1 1 2 3 3 3 0 fzo-like conserved region COMP PF11598.8 gi|212224333|ref|YP_002307569.1| - 5.9 7.4 8.5 3.3 8.3 0.4 3.1 3 0 0 3 3 3 0 Cartilage oligomeric matrix protein MCU PF04678.13 gi|212224333|ref|YP_002307569.1| - 7.2 6.7 6.6 39 4.3 6.5 1.9 1 1 0 1 1 1 0 Mitochondrial calcium uniporter Snapin_Pallidin PF14712.6 gi|212224333|ref|YP_002307569.1| - 7.2 7.1 11.1 4.5 7.8 3.8 2.4 1 1 1 2 2 2 0 Snapin/Pallidin ZapB PF06005.12 gi|212224333|ref|YP_002307569.1| - 7.6 7.1 14.9 3.7 8.1 1.2 2.9 1 1 2 3 3 2 0 Cell division protein ZapB DUF5320 PF17253.2 gi|212224333|ref|YP_002307569.1| - 8.4 7.5 6.9 5.7 8.1 0.3 2.7 2 1 0 2 2 2 0 Family of unknown function (DUF5320) Tropomyosin_1 PF12718.7 gi|212224333|ref|YP_002307569.1| - 8.5 6.5 14.7 34 4.6 13.4 2.3 1 1 1 2 2 2 0 Tropomyosin like Latarcin PF10279.9 gi|212224333|ref|YP_002307569.1| - 9 6.8 12.1 35 4.9 12.1 2.1 1 1 0 1 1 1 0 Latarcin precursor Fungal_TACC PF12709.7 gi|212224333|ref|YP_002307569.1| - 9.7 6.7 11.1 12 6.4 0.2 3.1 1 1 2 3 3 3 0 Fungal Transforming acidic coiled-coil (TACC) proteins Arch_flagellin PF01917.16 gi|212224334|ref|YP_002307570.1| - 1.2e-42 145.9 0.6 2.3e-42 145.0 0.6 1.4 1 1 0 1 1 1 1 Archaebacterial flagellin Arch_flagellin PF01917.16 gi|212224335|ref|YP_002307571.1| - 2.9e-43 147.9 5.4 3.3e-43 147.7 5.4 1.0 1 0 0 1 1 1 1 Archaebacterial flagellin Arch_flagellin PF01917.16 gi|212224336|ref|YP_002307572.1| - 4.8e-50 169.9 6.7 6e-50 169.6 6.7 1.1 1 0 0 1 1 1 1 Archaebacterial flagellin DUF2141 PF09912.9 gi|212224336|ref|YP_002307572.1| - 0.064 13.2 0.2 0.32 10.9 0.0 2.2 2 1 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2141) Arch_flagellin PF01917.16 gi|212224337|ref|YP_002307573.1| - 3.5e-46 157.4 22.6 9e-34 117.0 23.7 2.5 1 1 1 2 2 2 2 Archaebacterial flagellin RskA PF10099.9 gi|212224337|ref|YP_002307573.1| - 0.077 13.3 0.9 0.16 12.2 0.9 1.5 1 0 0 1 1 1 0 Anti-sigma-K factor rskA DUF3953 PF13129.6 gi|212224337|ref|YP_002307573.1| - 0.13 12.0 1.4 0.32 10.8 1.4 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3953) Arch_flagellin PF01917.16 gi|212224338|ref|YP_002307574.1| - 5.6e-50 169.7 7.1 6.8e-50 169.4 7.1 1.1 1 0 0 1 1 1 1 Archaebacterial flagellin RskA PF10099.9 gi|212224338|ref|YP_002307574.1| - 0.038 14.3 0.3 0.041 14.2 0.3 1.3 1 0 0 1 1 1 0 Anti-sigma-K factor rskA MLANA PF14991.6 gi|212224338|ref|YP_002307574.1| - 0.11 12.7 0.0 0.19 12.0 0.0 1.3 1 0 0 1 1 1 0 Protein melan-A Methyltransf_23 PF13489.6 gi|212224339|ref|YP_002307575.1| - 3.8e-14 52.9 0.0 6.2e-14 52.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|212224339|ref|YP_002307575.1| - 4.4e-13 49.3 0.0 8.6e-13 48.3 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|212224339|ref|YP_002307575.1| - 9.2e-12 45.5 0.0 2.7e-11 44.0 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|212224339|ref|YP_002307575.1| - 1.4e-11 44.2 0.0 2e-11 43.7 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_25 PF13649.6 gi|212224339|ref|YP_002307575.1| - 3e-11 43.9 0.0 6.2e-11 42.9 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|212224339|ref|YP_002307575.1| - 3.6e-10 40.5 0.0 7e-10 39.5 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.19 gi|212224339|ref|YP_002307575.1| - 3e-09 37.0 0.0 4.9e-09 36.2 0.0 1.3 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) CMAS PF02353.20 gi|212224339|ref|YP_002307575.1| - 0.007 15.7 0.0 0.01 15.2 0.0 1.3 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_30 PF05430.11 gi|212224339|ref|YP_002307575.1| - 0.03 14.2 0.0 13 5.6 0.0 2.7 3 0 0 3 3 3 0 S-adenosyl-L-methionine-dependent methyltransferase HlyD_D4 PF16572.5 gi|212224339|ref|YP_002307575.1| - 0.036 13.9 0.2 0.091 12.6 0.2 1.6 1 0 0 1 1 1 0 Long alpha hairpin domain of cation efflux system protein, CusB NNMT_PNMT_TEMT PF01234.17 gi|212224339|ref|YP_002307575.1| - 0.11 11.7 0.0 0.35 10.0 0.0 1.8 2 0 0 2 2 2 0 NNMT/PNMT/TEMT family DUF1495 PF07381.11 gi|212224340|ref|YP_002307576.1| - 1.5e-33 114.4 0.5 1.8e-33 114.2 0.5 1.1 1 0 0 1 1 1 1 Winged helix DNA-binding domain (DUF1495) HTH_5 PF01022.20 gi|212224340|ref|YP_002307576.1| - 0.016 15.1 0.0 0.031 14.1 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family DUF4364 PF14277.6 gi|212224340|ref|YP_002307576.1| - 0.053 13.3 0.1 0.11 12.3 0.0 1.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4364) HTH_IclR PF09339.10 gi|212224340|ref|YP_002307576.1| - 0.086 12.7 0.0 0.99 9.3 0.0 2.2 2 0 0 2 2 2 0 IclR helix-turn-helix domain DUF505 PF04458.12 gi|212224340|ref|YP_002307576.1| - 0.098 11.0 0.1 0.13 10.6 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF505) Baculo_PEP_C PF04513.12 gi|212224341|ref|YP_002307577.1| - 1.6e-05 24.9 4.0 0.0022 18.1 0.3 3.6 2 1 1 3 3 3 2 Baculovirus polyhedron envelope protein, PEP, C terminus Filament PF00038.21 gi|212224341|ref|YP_002307577.1| - 0.0012 18.5 24.0 0.0012 18.5 24.0 2.4 2 1 0 2 2 2 1 Intermediate filament protein Laminin_II PF06009.12 gi|212224341|ref|YP_002307577.1| - 0.0029 17.6 1.8 0.0029 17.6 1.8 3.7 2 1 2 4 4 4 1 Laminin Domain II NPV_P10 PF05531.12 gi|212224341|ref|YP_002307577.1| - 0.0031 17.9 5.5 0.47 10.9 1.4 4.4 2 1 2 4 4 4 1 Nucleopolyhedrovirus P10 protein LXG PF04740.12 gi|212224341|ref|YP_002307577.1| - 0.0031 17.2 10.8 0.0063 16.3 1.9 2.8 2 1 1 3 3 3 2 LXG domain of WXG superfamily DUF1664 PF07889.12 gi|212224341|ref|YP_002307577.1| - 0.013 15.6 17.6 0.045 13.8 1.5 4.8 2 2 4 6 6 6 0 Protein of unknown function (DUF1664) ApoLp-III PF07464.11 gi|212224341|ref|YP_002307577.1| - 0.015 15.4 13.6 0.016 15.3 4.4 3.1 3 1 1 4 4 3 0 Apolipophorin-III precursor (apoLp-III) Prominin PF05478.11 gi|212224341|ref|YP_002307577.1| - 0.026 12.5 12.1 0.017 13.1 8.5 1.9 1 1 1 2 2 2 0 Prominin ApoO PF09769.9 gi|212224341|ref|YP_002307577.1| - 0.028 14.4 5.8 0.048 13.6 0.1 2.7 3 0 0 3 3 2 0 Apolipoprotein O DUF4407 PF14362.6 gi|212224341|ref|YP_002307577.1| - 0.052 12.9 6.4 0.12 11.7 6.4 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF4407) YlqD PF11068.8 gi|212224341|ref|YP_002307577.1| - 0.13 12.6 18.8 0.26 11.7 1.2 3.8 2 1 2 4 4 4 0 YlqD protein Atg14 PF10186.9 gi|212224341|ref|YP_002307577.1| - 0.14 11.2 17.3 0.014 14.5 12.6 1.7 2 1 0 2 2 2 0 Vacuolar sorting 38 and autophagy-related subunit 14 BORCS8 PF10167.9 gi|212224341|ref|YP_002307577.1| - 0.15 12.0 3.0 2.8 7.9 0.1 3.1 1 1 2 3 3 3 0 BLOC-1-related complex sub-unit 8 LdpA_C PF12617.8 gi|212224341|ref|YP_002307577.1| - 0.19 11.3 0.5 1.5 8.4 0.0 2.4 2 0 0 2 2 2 0 Iron-Sulfur binding protein C terminal DUF948 PF06103.11 gi|212224341|ref|YP_002307577.1| - 0.21 11.9 7.2 2.4 8.5 0.3 4.1 2 1 2 4 4 4 0 Bacterial protein of unknown function (DUF948) OmpH PF03938.14 gi|212224341|ref|YP_002307577.1| - 0.21 11.9 21.8 0.2 12.0 0.8 3.4 2 1 1 3 3 3 0 Outer membrane protein (OmpH-like) DLP_helical PF18709.1 gi|212224341|ref|YP_002307577.1| - 0.25 10.5 18.6 1.2 8.3 0.4 4.0 2 1 1 4 4 4 0 Dynamin-like helical domain Lebercilin PF15619.6 gi|212224341|ref|YP_002307577.1| - 0.4 10.3 33.7 5.3 6.6 27.3 3.4 2 1 0 2 2 2 0 Ciliary protein causing Leber congenital amaurosis disease Lectin_N PF03954.14 gi|212224341|ref|YP_002307577.1| - 0.48 10.2 8.6 21 4.8 6.8 3.0 1 1 1 2 2 2 0 Hepatic lectin, N-terminal domain Exonuc_VII_L PF02601.15 gi|212224341|ref|YP_002307577.1| - 0.59 9.6 15.9 0.3 10.6 11.5 2.1 1 1 0 2 2 2 0 Exonuclease VII, large subunit Bacillus_HBL PF05791.11 gi|212224341|ref|YP_002307577.1| - 0.61 9.9 6.6 0.39 10.5 1.7 2.9 2 1 1 3 3 3 0 Bacillus haemolytic enterotoxin (HBL) FUSC-like PF12805.7 gi|212224341|ref|YP_002307577.1| - 0.62 9.1 6.5 4.3 6.3 0.0 2.8 2 1 0 2 2 2 0 FUSC-like inner membrane protein yccS DUF45 PF01863.17 gi|212224341|ref|YP_002307577.1| - 0.73 9.8 6.9 1.7 8.7 6.6 1.7 1 1 0 1 1 1 0 Protein of unknown function DUF45 TMPIT PF07851.13 gi|212224341|ref|YP_002307577.1| - 0.79 8.9 14.9 0.15 11.3 4.8 2.5 2 1 1 3 3 3 0 TMPIT-like protein CODH_A_N PF18537.1 gi|212224341|ref|YP_002307577.1| - 0.94 9.5 5.7 13 5.8 0.0 3.8 1 1 2 3 3 3 0 Carbon monoxide dehydrogenase subunit alpha N-terminal domain Fib_alpha PF08702.10 gi|212224341|ref|YP_002307577.1| - 0.95 9.6 14.9 2.1 8.6 0.7 3.5 2 1 2 4 4 4 0 Fibrinogen alpha/beta chain family DUF4363 PF14276.6 gi|212224341|ref|YP_002307577.1| - 1.1 9.4 13.3 4.9 7.3 6.6 3.7 3 1 1 4 4 4 0 Domain of unknown function (DUF4363) Baculo_p24 PF05073.12 gi|212224341|ref|YP_002307577.1| - 1.2 8.9 6.2 9 6.0 0.1 2.6 1 1 2 3 3 3 0 Baculovirus P24 capsid protein dCache_2 PF08269.11 gi|212224341|ref|YP_002307577.1| - 1.8 7.7 7.9 0.48 9.6 3.1 2.2 1 1 0 2 2 2 0 Cache domain COG2 PF06148.11 gi|212224341|ref|YP_002307577.1| - 2.6 8.1 24.0 1.2 9.3 4.0 4.5 2 1 2 4 4 4 0 COG (conserved oligomeric Golgi) complex component, COG2 Cluap1 PF10234.9 gi|212224341|ref|YP_002307577.1| - 3.7 6.9 21.2 0.082 12.3 8.6 3.2 2 1 1 3 3 3 0 Clusterin-associated protein-1 LMBR1 PF04791.16 gi|212224341|ref|YP_002307577.1| - 3.8 6.3 9.9 25 3.6 9.9 2.0 1 1 0 1 1 1 0 LMBR1-like membrane protein DUF4763 PF15960.5 gi|212224341|ref|YP_002307577.1| - 3.8 6.7 18.3 0.045 13.0 6.9 2.9 2 1 1 3 3 3 0 Domain of unknown function (DUF4763) Fzo_mitofusin PF04799.13 gi|212224341|ref|YP_002307577.1| - 3.9 7.0 18.0 4.1 6.9 2.3 3.6 2 1 1 3 3 3 0 fzo-like conserved region Mitofilin PF09731.9 gi|212224341|ref|YP_002307577.1| - 5.3 5.8 25.5 19 3.9 25.5 1.9 1 1 0 1 1 1 0 Mitochondrial inner membrane protein BLOC1_2 PF10046.9 gi|212224341|ref|YP_002307577.1| - 5.4 7.4 19.8 23 5.4 0.1 4.9 4 1 1 5 5 4 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 MscS_porin PF12795.7 gi|212224341|ref|YP_002307577.1| - 5.5 6.5 22.1 70 2.8 17.9 3.2 2 1 0 2 2 2 0 Mechanosensitive ion channel porin domain DUF1043 PF06295.12 gi|212224341|ref|YP_002307577.1| - 7.9 6.5 15.7 3.6 7.6 0.2 3.6 2 1 1 4 4 4 0 Protein of unknown function (DUF1043) KxDL PF10241.9 gi|212224341|ref|YP_002307577.1| - 8.1 6.8 16.6 0.19 12.1 4.5 3.8 3 1 0 4 4 4 0 Uncharacterized conserved protein DASH_Dam1 PF08653.10 gi|212224341|ref|YP_002307577.1| - 8.3 6.3 14.2 12 5.8 0.1 5.3 6 0 0 6 6 6 0 DASH complex subunit Dam1 DUF16 PF01519.16 gi|212224341|ref|YP_002307577.1| - 9 6.8 19.9 27 5.3 4.4 3.6 2 1 1 3 3 3 0 Protein of unknown function DUF16 CorA PF01544.18 gi|212224341|ref|YP_002307577.1| - 9.7 5.4 26.8 0.3 10.4 4.6 3.6 2 1 2 4 4 4 0 CorA-like Mg2+ transporter protein FUSC PF04632.12 gi|212224341|ref|YP_002307577.1| - 9.8 4.6 8.4 0.59 8.6 0.9 2.2 2 1 1 3 3 3 0 Fusaric acid resistance protein family CheW PF01584.19 gi|212224342|ref|YP_002307578.1| - 1.3e-35 122.0 0.7 1.5e-35 121.8 0.7 1.0 1 0 0 1 1 1 1 CheW-like domain AAA_24 PF13479.6 gi|212224342|ref|YP_002307578.1| - 0.021 14.6 0.0 0.022 14.5 0.0 1.1 1 0 0 1 1 1 0 AAA domain MCPsignal PF00015.21 gi|212224343|ref|YP_002307579.1| - 3e-38 131.4 19.8 3e-38 131.4 19.8 3.2 1 1 3 4 4 4 1 Methyl-accepting chemotaxis protein (MCP) signalling domain EzrA PF06160.12 gi|212224343|ref|YP_002307579.1| - 4.6e-05 21.8 18.3 0.002 16.4 7.8 2.8 2 1 0 2 2 2 2 Septation ring formation regulator, EzrA DUF1664 PF07889.12 gi|212224343|ref|YP_002307579.1| - 6.8e-05 22.9 24.5 0.025 14.6 5.0 4.7 2 2 2 5 5 5 2 Protein of unknown function (DUF1664) Mod_r PF07200.13 gi|212224343|ref|YP_002307579.1| - 0.0027 17.8 2.6 0.0027 17.8 2.6 3.4 2 2 1 3 3 3 1 Modifier of rudimentary (Mod(r)) protein APG17 PF04108.12 gi|212224343|ref|YP_002307579.1| - 0.0029 16.8 18.7 0.064 12.4 3.9 3.1 2 2 0 2 2 2 2 Autophagy protein Apg17 Nre_C PF04895.12 gi|212224343|ref|YP_002307579.1| - 0.0035 17.2 4.0 0.3 11.0 0.4 3.7 1 1 3 4 4 3 1 Archaeal Nre, C-terminal CENP-K PF11802.8 gi|212224343|ref|YP_002307579.1| - 0.0038 16.8 0.5 0.0038 16.8 0.5 2.6 1 1 1 2 2 2 1 Centromere-associated protein K Fib_alpha PF08702.10 gi|212224343|ref|YP_002307579.1| - 0.0051 17.0 1.7 0.0051 17.0 1.7 4.0 2 2 2 4 4 4 2 Fibrinogen alpha/beta chain family CENP-F_leu_zip PF10473.9 gi|212224343|ref|YP_002307579.1| - 0.0071 16.4 2.1 0.0071 16.4 2.1 3.5 1 1 2 3 3 2 1 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Rubrerythrin PF02915.17 gi|212224343|ref|YP_002307579.1| - 0.0081 16.6 1.0 0.049 14.0 0.2 2.6 2 0 0 2 2 2 1 Rubrerythrin DUF2613 PF11021.8 gi|212224343|ref|YP_002307579.1| - 0.0084 16.2 0.4 0.023 14.8 0.4 1.7 1 0 0 1 1 1 1 Protein of unknown function (DUF2613) Ferritin PF00210.24 gi|212224343|ref|YP_002307579.1| - 0.019 14.9 1.0 0.019 14.9 1.0 3.4 1 1 2 3 3 3 0 Ferritin-like domain BLOC1_2 PF10046.9 gi|212224343|ref|YP_002307579.1| - 0.02 15.2 21.8 0.15 12.3 1.5 5.4 2 2 3 5 5 5 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Syntaxin_2 PF14523.6 gi|212224343|ref|YP_002307579.1| - 0.022 15.1 2.5 0.022 15.1 2.5 4.2 1 1 3 4 4 3 0 Syntaxin-like protein WXG100 PF06013.12 gi|212224343|ref|YP_002307579.1| - 0.025 14.8 14.5 1 9.7 2.6 6.1 3 2 1 5 5 4 0 Proteins of 100 residues with WXG Elf4 PF07011.11 gi|212224343|ref|YP_002307579.1| - 0.029 14.3 3.6 0.14 12.1 0.2 3.4 3 1 1 4 4 4 0 Early Flowering 4 domain Baculo_PEP_C PF04513.12 gi|212224343|ref|YP_002307579.1| - 0.03 14.4 28.7 0.19 11.8 4.6 4.8 1 1 3 4 4 4 0 Baculovirus polyhedron envelope protein, PEP, C terminus FlgN PF05130.12 gi|212224343|ref|YP_002307579.1| - 0.03 14.8 19.4 0.057 13.9 3.1 3.8 2 2 2 4 4 4 0 FlgN protein RecG_N PF17190.4 gi|212224343|ref|YP_002307579.1| - 0.032 14.9 9.4 2.9 8.7 0.0 5.0 2 2 4 6 6 6 0 RecG N-terminal helical domain Cauli_AT PF03233.13 gi|212224343|ref|YP_002307579.1| - 0.044 13.7 1.0 0.044 13.7 1.0 5.4 1 1 3 6 6 6 0 Aphid transmission protein DUF3829 PF12889.7 gi|212224343|ref|YP_002307579.1| - 0.047 13.2 4.5 1 8.7 4.5 2.5 1 1 0 1 1 1 0 Protein of unknown function (DUF3829) DUF948 PF06103.11 gi|212224343|ref|YP_002307579.1| - 0.059 13.6 26.4 1.7 9.0 2.3 6.0 2 2 2 4 4 4 0 Bacterial protein of unknown function (DUF948) BAR PF03114.18 gi|212224343|ref|YP_002307579.1| - 0.06 13.0 5.0 0.71 9.5 0.3 2.9 1 1 0 2 2 2 0 BAR domain Serine_rich PF08824.10 gi|212224343|ref|YP_002307579.1| - 0.065 13.2 10.0 1.4 8.9 1.0 3.6 1 1 3 4 4 4 0 Serine rich protein interaction domain ApoLp-III PF07464.11 gi|212224343|ref|YP_002307579.1| - 0.068 13.3 18.1 0.053 13.6 6.0 3.6 2 2 1 3 3 3 0 Apolipophorin-III precursor (apoLp-III) HAUS6_N PF14661.6 gi|212224343|ref|YP_002307579.1| - 0.073 12.6 7.8 0.24 11.0 1.7 2.7 1 1 0 2 2 2 0 HAUS augmin-like complex subunit 6 N-terminus Vps53_N PF04100.12 gi|212224343|ref|YP_002307579.1| - 0.074 12.0 18.5 0.018 14.0 7.0 3.3 2 2 2 4 4 4 0 Vps53-like, N-terminal DASH_Dam1 PF08653.10 gi|212224343|ref|YP_002307579.1| - 0.092 12.6 4.7 15 5.5 0.0 5.6 5 1 1 6 6 6 0 DASH complex subunit Dam1 DUF2203 PF09969.9 gi|212224343|ref|YP_002307579.1| - 0.099 13.4 13.1 2 9.2 0.2 4.2 1 1 2 4 4 3 0 Uncharacterized conserved protein (DUF2203) DUF16 PF01519.16 gi|212224343|ref|YP_002307579.1| - 0.11 13.0 16.5 3.4e+03 -1.4 16.5 4.6 1 1 0 1 1 0 0 Protein of unknown function DUF16 RPW8 PF05659.11 gi|212224343|ref|YP_002307579.1| - 0.11 12.2 14.3 0.044 13.5 0.8 4.6 2 2 2 4 4 4 0 Arabidopsis broad-spectrum mildew resistance protein RPW8 Arfaptin PF06456.13 gi|212224343|ref|YP_002307579.1| - 0.12 11.9 4.3 3.1 7.3 0.4 3.1 1 1 2 3 3 3 0 Arfaptin-like domain CREPT PF16566.5 gi|212224343|ref|YP_002307579.1| - 0.14 12.4 13.8 0.85 9.8 1.6 3.9 2 2 2 4 4 4 0 Cell-cycle alteration and expression-elevated protein in tumour Laminin_II PF06009.12 gi|212224343|ref|YP_002307579.1| - 0.2 11.7 24.6 0.056 13.5 2.1 4.4 1 1 2 4 4 4 0 Laminin Domain II DUF812 PF05667.11 gi|212224343|ref|YP_002307579.1| - 0.27 10.1 16.3 1.3 7.9 16.2 2.1 1 1 0 1 1 1 0 Protein of unknown function (DUF812) Spc7 PF08317.11 gi|212224343|ref|YP_002307579.1| - 0.27 10.1 21.3 0.38 9.6 1.4 3.4 1 1 1 3 3 3 0 Spc7 kinetochore protein Cas_DxTHG PF09455.10 gi|212224343|ref|YP_002307579.1| - 0.28 10.7 4.0 2.9 7.4 4.0 2.1 1 1 0 1 1 1 0 CRISPR-associated (Cas) DxTHG family NPV_P10 PF05531.12 gi|212224343|ref|YP_002307579.1| - 0.29 11.6 27.2 11 6.5 0.1 6.4 3 2 2 5 5 4 0 Nucleopolyhedrovirus P10 protein DUF1079 PF06435.11 gi|212224343|ref|YP_002307579.1| - 0.33 11.2 2.5 0.67 10.2 0.1 2.9 3 0 0 3 3 1 0 Repeat of unknown function (DUF1079) Laminin_I PF06008.14 gi|212224343|ref|YP_002307579.1| - 0.34 10.6 24.3 2.6 7.7 9.8 4.3 1 1 4 5 5 5 0 Laminin Domain I YkyA PF10368.9 gi|212224343|ref|YP_002307579.1| - 0.36 10.5 20.8 0.17 11.6 6.6 3.7 2 2 1 4 4 4 0 Putative cell-wall binding lipoprotein BORCS8 PF10167.9 gi|212224343|ref|YP_002307579.1| - 0.49 10.3 8.4 5.7 6.9 1.2 3.6 2 1 2 4 4 3 0 BLOC-1-related complex sub-unit 8 COG5 PF10392.9 gi|212224343|ref|YP_002307579.1| - 0.66 10.2 15.0 1.1 9.5 0.4 4.2 2 2 2 5 5 5 0 Golgi transport complex subunit 5 CDT1_C PF16679.5 gi|212224343|ref|YP_002307579.1| - 0.69 10.4 4.4 1.7 9.1 0.5 3.2 1 1 1 3 3 3 0 DNA replication factor Cdt1 C-terminal domain DASH_Duo1 PF08651.10 gi|212224343|ref|YP_002307579.1| - 0.87 9.4 15.5 1.4 8.8 0.7 5.3 4 2 1 6 6 5 0 DASH complex subunit Duo1 HAUS-augmin3 PF14932.6 gi|212224343|ref|YP_002307579.1| - 0.99 8.9 8.3 1.1 8.8 3.4 2.8 1 1 2 3 3 2 0 HAUS augmin-like complex subunit 3 DUF3450 PF11932.8 gi|212224343|ref|YP_002307579.1| - 1 8.6 19.1 0.036 13.4 2.5 3.9 1 1 2 4 4 4 0 Protein of unknown function (DUF3450) T7SS_ESX_EspC PF10824.8 gi|212224343|ref|YP_002307579.1| - 1.2 9.7 8.7 0.59 10.6 0.4 3.8 3 2 2 5 5 4 0 Excreted virulence factor EspC, type VII ESX diderm TMPIT PF07851.13 gi|212224343|ref|YP_002307579.1| - 1.2 8.3 9.7 0.46 9.7 1.1 3.1 1 1 2 3 3 3 0 TMPIT-like protein ANAPC4 PF12896.7 gi|212224343|ref|YP_002307579.1| - 1.2 8.6 5.8 3 7.3 1.5 3.3 1 1 2 3 3 3 0 Anaphase-promoting complex, cyclosome, subunit 4 LOH1CR12 PF10158.9 gi|212224343|ref|YP_002307579.1| - 1.8 8.6 10.1 9.2 6.3 0.1 3.8 1 1 1 3 3 3 0 Tumour suppressor protein TMF_TATA_bd PF12325.8 gi|212224343|ref|YP_002307579.1| - 2 8.7 23.9 0.91 9.8 3.8 4.1 2 2 1 4 4 4 0 TATA element modulatory factor 1 TATA binding Sec34 PF04136.15 gi|212224343|ref|YP_002307579.1| - 2.6 7.9 12.4 0.5 10.2 0.5 4.0 2 2 1 3 3 3 0 Sec34-like family KxDL PF10241.9 gi|212224343|ref|YP_002307579.1| - 2.9 8.2 11.1 6.8 7.0 0.2 4.6 4 2 2 6 6 4 0 Uncharacterized conserved protein Goodbye PF17109.5 gi|212224343|ref|YP_002307579.1| - 3 8.3 10.8 8.7 6.8 1.0 4.2 2 2 3 5 5 5 0 fungal STAND N-terminal Goodbye domain HSBP1 PF06825.12 gi|212224343|ref|YP_002307579.1| - 3.7 7.5 16.8 4.9 7.1 0.3 5.5 6 0 0 6 6 4 0 Heat shock factor binding protein 1 Mce4_CUP1 PF11887.8 gi|212224343|ref|YP_002307579.1| - 5 6.5 9.3 5.7 6.3 0.8 3.3 1 1 2 3 3 3 0 Cholesterol uptake porter CUP1 of Mce4, putative DUF2959 PF11172.8 gi|212224343|ref|YP_002307579.1| - 5.3 7.1 15.6 8.1 6.5 0.8 4.6 2 2 2 5 5 5 0 Protein of unknown function (DUF2959) MitMem_reg PF13012.6 gi|212224343|ref|YP_002307579.1| - 6.3 7.3 12.0 1.5 9.2 1.8 4.1 1 1 1 2 2 2 0 Maintenance of mitochondrial structure and function Hormone_1 PF00103.20 gi|212224343|ref|YP_002307579.1| - 7.6 6.2 8.0 5.2 6.8 0.2 3.2 2 2 2 4 4 3 0 Somatotropin hormone family Mer2 PF09074.10 gi|212224343|ref|YP_002307579.1| - 8.3 6.2 18.5 13 5.6 6.4 3.3 2 2 0 2 2 2 0 Mer2 TACC_C PF05010.14 gi|212224343|ref|YP_002307579.1| - 9 6.0 13.1 3 7.6 2.6 3.2 1 1 1 3 3 3 0 Transforming acidic coiled-coil-containing protein (TACC), C-terminal DUF1759 PF03564.15 gi|212224343|ref|YP_002307579.1| - 9.5 6.2 7.1 5.2 7.0 0.5 3.4 2 1 3 5 5 5 0 Protein of unknown function (DUF1759) CENP-H PF05837.12 gi|212224343|ref|YP_002307579.1| - 9.5 6.7 18.8 3.1 8.2 0.9 4.3 2 1 3 5 5 5 0 Centromere protein H (CENP-H) CheR PF01739.18 gi|212224344|ref|YP_002307580.1| - 7.5e-57 192.0 0.0 9.9e-57 191.6 0.0 1.1 1 0 0 1 1 1 1 CheR methyltransferase, SAM binding domain CheR_N PF03705.15 gi|212224344|ref|YP_002307580.1| - 8.5e-10 38.2 2.5 1.6e-09 37.3 2.5 1.5 1 0 0 1 1 1 1 CheR methyltransferase, all-alpha domain Methyltransf_12 PF08242.12 gi|212224344|ref|YP_002307580.1| - 0.001 19.7 0.0 0.0091 16.7 0.0 2.2 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|212224344|ref|YP_002307580.1| - 0.0038 17.9 0.0 0.015 15.9 0.0 2.1 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|212224344|ref|YP_002307580.1| - 0.024 15.3 0.0 0.46 11.2 0.0 2.4 1 1 0 1 1 1 0 Methyltransferase domain Methyltransf_2 PF00891.18 gi|212224344|ref|YP_002307580.1| - 0.11 11.8 0.0 0.16 11.3 0.0 1.2 1 0 0 1 1 1 0 O-methyltransferase domain B12-binding PF02310.19 gi|212224344|ref|YP_002307580.1| - 0.14 12.2 0.0 0.31 11.1 0.0 1.6 1 0 0 1 1 1 0 B12 binding domain Response_reg PF00072.24 gi|212224345|ref|YP_002307581.1| - 2.2e-33 114.8 1.1 2.4e-33 114.6 1.1 1.0 1 0 0 1 1 1 1 Response regulator receiver domain B12-binding PF02310.19 gi|212224345|ref|YP_002307581.1| - 0.033 14.2 0.1 0.042 13.9 0.1 1.2 1 0 0 1 1 1 0 B12 binding domain Peripla_BP_6 PF13458.6 gi|212224345|ref|YP_002307581.1| - 0.075 12.7 0.1 0.09 12.4 0.1 1.1 1 0 0 1 1 1 0 Periplasmic binding protein CheB_methylest PF01339.17 gi|212224346|ref|YP_002307582.1| - 4.4e-62 208.8 0.2 1.3e-61 207.3 0.1 1.8 2 0 0 2 2 2 1 CheB methylesterase Response_reg PF00072.24 gi|212224346|ref|YP_002307582.1| - 2e-25 89.2 0.4 5.1e-25 87.8 0.2 1.8 2 0 0 2 2 2 1 Response regulator receiver domain P2 PF07194.11 gi|212224347|ref|YP_002307583.1| - 3.8e-38 129.4 3.6 1.4e-20 73.1 0.4 3.1 3 0 0 3 3 3 2 P2 response regulator binding domain CheW PF01584.19 gi|212224347|ref|YP_002307583.1| - 2.8e-24 85.3 4.4 9.4e-24 83.6 1.7 2.3 2 0 0 2 2 2 1 CheW-like domain Hpt PF01627.23 gi|212224347|ref|YP_002307583.1| - 6.3e-21 74.4 2.0 1e-20 73.7 0.0 2.4 3 0 0 3 3 3 1 Hpt domain HATPase_c PF02518.26 gi|212224347|ref|YP_002307583.1| - 2.6e-19 69.8 0.1 7.6e-19 68.3 0.1 1.8 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H-kinase_dim PF02895.14 gi|212224347|ref|YP_002307583.1| - 9.7e-18 64.3 3.6 3.2e-17 62.7 3.6 2.0 1 0 0 1 1 1 1 Signal transducing histidine kinase, homodimeric domain HATPase_c_3 PF13589.6 gi|212224347|ref|YP_002307583.1| - 0.00023 21.0 0.3 0.00099 19.0 0.0 2.2 2 1 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.6 gi|212224347|ref|YP_002307583.1| - 0.074 13.0 0.0 0.23 11.4 0.0 1.9 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain RNA_pol_Rpb5_C PF01191.19 gi|212224347|ref|YP_002307583.1| - 0.077 12.9 0.3 25 4.8 0.0 3.1 2 0 0 2 2 2 0 RNA polymerase Rpb5, C-terminal domain COMP PF11598.8 gi|212224347|ref|YP_002307583.1| - 0.75 10.3 2.5 3 8.4 1.3 2.6 2 0 0 2 2 2 0 Cartilage oligomeric matrix protein CheC PF04509.12 gi|212224348|ref|YP_002307584.1| - 6.7e-18 64.3 5.5 2e-09 37.2 1.0 2.7 2 0 0 2 2 2 2 CheC-like family CheX PF13690.6 gi|212224348|ref|YP_002307584.1| - 5.3e-08 32.9 0.4 3.7e-06 27.0 0.1 2.1 2 0 0 2 2 2 2 Chemotaxis phosphatase CheX DUF2202 PF09968.9 gi|212224348|ref|YP_002307584.1| - 0.059 13.2 0.0 0.08 12.8 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized protein domain (DUF2202) CheC PF04509.12 gi|212224349|ref|YP_002307585.1| - 1.3e-11 44.2 3.3 5.2e-05 23.1 0.1 2.7 3 0 0 3 3 3 2 CheC-like family CheX PF13690.6 gi|212224349|ref|YP_002307585.1| - 3e-11 43.4 0.0 1.3e-08 34.9 0.0 2.2 2 0 0 2 2 2 2 Chemotaxis phosphatase CheX CheD PF03975.13 gi|212224350|ref|YP_002307586.1| - 3.2e-34 117.3 0.1 4e-34 117.0 0.1 1.1 1 0 0 1 1 1 1 CheD chemotactic sensory transduction dCache_1 PF02743.18 gi|212224351|ref|YP_002307587.1| - 3.5e-40 138.4 0.1 3.5e-40 138.4 0.1 4.3 2 1 1 4 4 3 1 Cache domain MCPsignal PF00015.21 gi|212224351|ref|YP_002307587.1| - 3.9e-40 137.5 55.2 2.3e-38 131.7 19.2 4.4 2 1 3 5 5 4 3 Methyl-accepting chemotaxis protein (MCP) signalling domain Cache_3-Cache_2 PF17201.4 gi|212224351|ref|YP_002307587.1| - 9e-16 58.0 2.0 9e-16 58.0 2.0 3.5 3 1 2 5 5 5 1 Cache 3/Cache 2 fusion domain HAMP PF00672.25 gi|212224351|ref|YP_002307587.1| - 1.7e-07 31.5 8.5 4.5e-06 27.0 0.0 5.2 4 1 1 5 5 4 1 HAMP domain dCache_2 PF08269.11 gi|212224351|ref|YP_002307587.1| - 9.3e-05 21.7 0.5 9.3e-05 21.7 0.5 5.3 4 1 1 5 5 5 1 Cache domain Fib_alpha PF08702.10 gi|212224351|ref|YP_002307587.1| - 0.00021 21.5 25.7 0.03 14.5 1.9 4.9 3 1 2 5 5 5 1 Fibrinogen alpha/beta chain family DUF2852 PF11014.8 gi|212224351|ref|YP_002307587.1| - 0.00087 19.4 4.5 0.0089 16.2 0.0 3.5 5 0 0 5 5 2 1 Protein of unknown function (DUF2852) Spc7 PF08317.11 gi|212224351|ref|YP_002307587.1| - 0.0012 17.8 32.5 0.057 12.3 11.9 2.9 1 1 2 3 3 3 2 Spc7 kinetochore protein GAPES1 PF17155.4 gi|212224351|ref|YP_002307587.1| - 0.0017 17.7 0.0 0.0048 16.3 0.0 1.7 1 0 0 1 1 1 1 Gammaproteobacterial periplasmic sensor domain sCache_2 PF17200.4 gi|212224351|ref|YP_002307587.1| - 0.003 17.4 0.7 0.003 17.4 0.7 3.4 3 0 0 3 3 2 1 Single Cache domain 2 Prominin PF05478.11 gi|212224351|ref|YP_002307587.1| - 0.0054 14.8 22.9 0.094 10.7 5.3 2.2 1 1 1 2 2 2 2 Prominin CheZ PF04344.13 gi|212224351|ref|YP_002307587.1| - 0.0077 16.2 6.8 0.0077 16.2 6.8 3.8 2 1 2 5 5 4 1 Chemotaxis phosphatase, CheZ Laminin_I PF06008.14 gi|212224351|ref|YP_002307587.1| - 0.013 15.2 38.1 0.041 13.6 4.0 3.7 3 1 0 4 4 3 0 Laminin Domain I NPV_P10 PF05531.12 gi|212224351|ref|YP_002307587.1| - 0.014 15.8 30.1 0.77 10.3 0.1 6.6 4 3 2 6 6 6 0 Nucleopolyhedrovirus P10 protein Med30 PF11315.8 gi|212224351|ref|YP_002307587.1| - 0.019 15.2 18.7 0.94 9.7 5.2 3.8 1 1 2 3 3 3 0 Mediator complex subunit 30 DUF948 PF06103.11 gi|212224351|ref|YP_002307587.1| - 0.024 14.9 43.6 0.19 12.0 3.9 7.1 4 3 1 5 5 5 0 Bacterial protein of unknown function (DUF948) TACC_C PF05010.14 gi|212224351|ref|YP_002307587.1| - 0.024 14.4 23.5 0.04 13.7 5.8 3.9 1 1 3 4 4 4 0 Transforming acidic coiled-coil-containing protein (TACC), C-terminal Syntaxin-6_N PF09177.11 gi|212224351|ref|YP_002307587.1| - 0.026 15.1 3.6 0.026 15.1 3.6 5.2 2 1 3 5 5 4 0 Syntaxin 6, N-terminal Lebercilin PF15619.6 gi|212224351|ref|YP_002307587.1| - 0.03 14.0 17.0 0.37 10.4 0.3 3.2 2 2 0 2 2 2 0 Ciliary protein causing Leber congenital amaurosis disease UPF0242 PF06785.11 gi|212224351|ref|YP_002307587.1| - 0.044 13.9 17.2 0.27 11.3 0.7 3.7 3 1 0 3 3 3 0 Uncharacterised protein family (UPF0242) N-terminus TssO PF17561.2 gi|212224351|ref|YP_002307587.1| - 0.11 12.6 0.1 0.11 12.6 0.1 5.8 4 2 1 5 5 4 0 Type VI secretion system, TssO NHR2 PF08788.11 gi|212224351|ref|YP_002307587.1| - 0.14 12.0 0.0 0.4 10.5 0.0 1.7 1 0 0 1 1 1 0 NHR2 domain like IFT57 PF10498.9 gi|212224351|ref|YP_002307587.1| - 0.14 11.1 26.3 0.13 11.2 3.4 3.2 2 1 1 3 3 3 0 Intra-flagellar transport protein 57 Alpha-2-MRAP_C PF06401.11 gi|212224351|ref|YP_002307587.1| - 0.15 12.0 11.4 0.12 12.3 3.8 2.7 1 1 2 3 3 3 0 Alpha-2-macroglobulin RAP, C-terminal domain AIP3 PF03915.13 gi|212224351|ref|YP_002307587.1| - 0.15 11.1 30.2 0.16 11.0 17.9 2.8 1 1 1 2 2 2 0 Actin interacting protein 3 DUF1664 PF07889.12 gi|212224351|ref|YP_002307587.1| - 0.19 11.7 34.8 0.33 11.0 3.9 5.4 2 2 3 6 6 6 0 Protein of unknown function (DUF1664) HSBP1 PF06825.12 gi|212224351|ref|YP_002307587.1| - 0.23 11.3 8.8 4.4 7.2 0.7 4.2 5 0 0 5 5 3 0 Heat shock factor binding protein 1 PhageMin_Tail PF10145.9 gi|212224351|ref|YP_002307587.1| - 0.45 10.4 22.8 0.03 14.2 6.1 4.1 1 1 1 3 3 3 0 Phage-related minor tail protein FlgN PF05130.12 gi|212224351|ref|YP_002307587.1| - 0.63 10.5 34.4 0.6 10.6 6.2 4.1 1 1 3 4 4 4 0 FlgN protein AAA_13 PF13166.6 gi|212224351|ref|YP_002307587.1| - 0.7 8.5 31.6 0.11 11.2 8.7 2.4 1 1 2 3 3 3 0 AAA domain MobL PF18555.1 gi|212224351|ref|YP_002307587.1| - 0.72 9.0 11.1 0.022 14.0 0.9 2.2 1 1 0 2 2 2 0 MobL relaxases Sec34 PF04136.15 gi|212224351|ref|YP_002307587.1| - 1.5 8.7 24.2 2.9 7.7 2.8 4.5 2 2 1 4 4 4 0 Sec34-like family FH2 PF02181.23 gi|212224351|ref|YP_002307587.1| - 1.5 7.8 14.4 3.5 6.7 2.4 3.4 1 1 2 3 3 3 0 Formin Homology 2 Domain Serine_rich PF08824.10 gi|212224351|ref|YP_002307587.1| - 1.9 8.5 16.8 13 5.8 1.0 4.3 1 1 3 4 4 4 0 Serine rich protein interaction domain CENP-K PF11802.8 gi|212224351|ref|YP_002307587.1| - 2 7.9 18.1 0.83 9.2 1.3 3.5 2 1 1 3 3 3 0 Centromere-associated protein K RPW8 PF05659.11 gi|212224351|ref|YP_002307587.1| - 2.4 7.8 15.6 1.4 8.6 0.3 4.3 3 2 0 4 4 4 0 Arabidopsis broad-spectrum mildew resistance protein RPW8 Herpes_UL17 PF04559.12 gi|212224351|ref|YP_002307587.1| - 2.9 6.6 6.2 2.7 6.7 3.8 2.0 1 1 1 2 2 2 0 Herpesvirus UL17 protein LMBR1 PF04791.16 gi|212224351|ref|YP_002307587.1| - 3.4 6.5 18.9 2 7.3 4.5 2.7 1 1 1 2 2 2 0 LMBR1-like membrane protein HisKA_3 PF07730.13 gi|212224351|ref|YP_002307587.1| - 3.6 8.2 21.4 3.7 8.1 0.3 5.9 3 2 2 5 5 5 0 Histidine kinase Snapin_Pallidin PF14712.6 gi|212224351|ref|YP_002307587.1| - 3.8 8.0 24.7 0.81 10.2 0.2 5.4 3 2 2 5 5 5 0 Snapin/Pallidin APG17 PF04108.12 gi|212224351|ref|YP_002307587.1| - 4.6 6.3 27.7 5.6 6.0 5.5 3.2 1 1 1 2 2 2 0 Autophagy protein Apg17 Laminin_II PF06009.12 gi|212224351|ref|YP_002307587.1| - 4.6 7.3 39.2 0.3 11.1 6.2 5.6 1 1 5 7 7 7 0 Laminin Domain II DUF2203 PF09969.9 gi|212224351|ref|YP_002307587.1| - 5.4 7.8 34.6 17 6.1 0.1 5.5 3 1 2 6 6 6 0 Uncharacterized conserved protein (DUF2203) CHDCT2 PF08074.11 gi|212224351|ref|YP_002307587.1| - 6.7 6.9 18.2 8.4 6.5 2.7 4.1 1 1 3 4 4 4 0 CHDCT2 (NUC038) domain FUSC PF04632.12 gi|212224351|ref|YP_002307587.1| - 7.3 5.0 15.6 12 4.3 9.1 2.2 1 1 1 2 2 2 0 Fusaric acid resistance protein family Ku_PK_bind PF08785.11 gi|212224352|ref|YP_002307588.1| - 0.00064 19.9 2.1 0.002 18.2 0.8 2.2 1 1 1 2 2 2 1 Ku C terminal domain like Phasin PF05597.11 gi|212224352|ref|YP_002307588.1| - 0.0015 18.5 4.0 0.066 13.2 0.1 2.3 2 0 0 2 2 2 2 Poly(hydroxyalcanoate) granule associated protein (phasin) ZapA PF05164.13 gi|212224352|ref|YP_002307588.1| - 0.025 15.0 4.8 1.5 9.3 0.7 3.1 2 1 1 3 3 3 0 Cell division protein ZapA DUF2254 PF10011.9 gi|212224352|ref|YP_002307588.1| - 0.14 11.0 0.1 0.2 10.4 0.1 1.2 1 0 0 1 1 1 0 Predicted membrane protein (DUF2254) ATPase_2 PF01637.18 gi|212224352|ref|YP_002307588.1| - 0.26 11.2 5.1 0.17 11.8 3.2 1.7 1 1 1 2 2 2 0 ATPase domain predominantly from Archaea TMF_DNA_bd PF12329.8 gi|212224352|ref|YP_002307588.1| - 0.29 11.2 9.7 0.58 10.2 0.2 2.7 2 0 0 2 2 2 0 TATA element modulatory factor 1 DNA binding CheF-arch PF04283.12 gi|212224353|ref|YP_002307589.1| - 8.4e-14 51.8 0.0 1.5e-13 51.1 0.0 1.4 1 0 0 1 1 1 1 Chemotaxis signal transduction system protein F from archaea PQQ_2 PF13360.6 gi|212224354|ref|YP_002307590.1| - 1e-11 44.9 0.4 2.2e-09 37.2 0.0 3.3 2 2 0 2 2 2 1 PQQ-like domain PQQ_3 PF13570.6 gi|212224354|ref|YP_002307590.1| - 2.8e-11 43.5 27.4 0.046 14.2 0.2 8.9 8 1 0 8 8 8 4 PQQ-like domain PQQ PF01011.21 gi|212224354|ref|YP_002307590.1| - 0.00038 20.2 26.5 0.13 12.2 0.2 7.6 9 0 0 9 9 9 3 PQQ enzyme repeat DUF4915 PF16261.5 gi|212224354|ref|YP_002307590.1| - 0.052 12.8 0.1 0.14 11.4 0.0 1.6 1 1 1 2 2 2 0 Domain of unknown function (DUF4915) HEAT_UF PF18817.1 gi|212224355|ref|YP_002307591.1| - 6.2e-27 93.6 2.0 7.4e-26 90.2 1.7 2.6 2 0 0 2 2 2 1 Repeat of uncharacterized protein PH0542 Adaptin_N PF01602.20 gi|212224355|ref|YP_002307591.1| - 4.2e-07 28.9 0.8 8.7e-07 27.9 0.8 1.4 1 1 0 1 1 1 1 Adaptin N terminal region HEAT_EZ PF13513.6 gi|212224355|ref|YP_002307591.1| - 6.6e-07 29.7 0.0 0.069 13.7 0.0 3.5 2 1 1 3 3 3 2 HEAT-like repeat Cnd1 PF12717.7 gi|212224355|ref|YP_002307591.1| - 4.5e-05 23.6 1.9 0.87 9.6 0.0 3.1 1 1 1 3 3 3 3 non-SMC mitotic condensation complex subunit 1 HEAT_2 PF13646.6 gi|212224355|ref|YP_002307591.1| - 0.00041 20.7 0.1 0.1 13.0 0.0 2.9 2 1 1 3 3 3 1 HEAT repeats HEAT PF02985.22 gi|212224355|ref|YP_002307591.1| - 0.00072 19.6 0.1 0.077 13.3 0.0 3.5 4 0 0 4 4 4 1 HEAT repeat Phage_GP20 PF06810.11 gi|212224356|ref|YP_002307592.1| - 2.6e-06 27.3 13.4 3.9e-05 23.5 7.1 3.0 2 1 1 3 3 3 1 Phage minor structural protein GP20 Prominin PF05478.11 gi|212224356|ref|YP_002307592.1| - 2e-05 22.8 12.2 0.0013 16.8 0.4 2.1 2 0 0 2 2 2 2 Prominin HSBP1 PF06825.12 gi|212224356|ref|YP_002307592.1| - 3.1e-05 23.8 8.6 0.17 11.8 0.2 3.9 3 0 0 3 3 3 2 Heat shock factor binding protein 1 MAD PF05557.13 gi|212224356|ref|YP_002307592.1| - 6.5e-05 21.5 35.5 0.012 14.0 8.8 2.1 1 1 1 2 2 2 2 Mitotic checkpoint protein Snapin_Pallidin PF14712.6 gi|212224356|ref|YP_002307592.1| - 9e-05 22.8 26.4 0.14 12.5 0.1 4.7 3 2 1 4 4 4 3 Snapin/Pallidin Sigma70_ner PF04546.13 gi|212224356|ref|YP_002307592.1| - 0.00017 21.6 5.2 0.00017 21.6 5.2 3.4 3 1 0 3 3 3 1 Sigma-70, non-essential region CdvA PF18822.1 gi|212224356|ref|YP_002307592.1| - 0.00065 19.5 8.7 0.00065 19.5 8.7 4.1 2 1 1 3 3 3 1 CdvA-like coiled-coil domain YabA PF06156.13 gi|212224356|ref|YP_002307592.1| - 0.00079 20.0 2.4 0.00079 20.0 2.4 5.1 1 1 1 3 3 2 1 Initiation control protein YabA Baculo_PEP_C PF04513.12 gi|212224356|ref|YP_002307592.1| - 0.00096 19.2 9.6 2.2 8.3 0.7 4.6 1 1 4 5 5 5 2 Baculovirus polyhedron envelope protein, PEP, C terminus NPV_P10 PF05531.12 gi|212224356|ref|YP_002307592.1| - 0.0013 19.1 4.9 1.8 9.1 0.9 3.9 2 2 2 4 4 4 1 Nucleopolyhedrovirus P10 protein TPR_MLP1_2 PF07926.12 gi|212224356|ref|YP_002307592.1| - 0.0043 17.1 5.9 0.0043 17.1 5.9 4.0 2 2 1 3 3 3 1 TPR/MLP1/MLP2-like protein BLOC1_2 PF10046.9 gi|212224356|ref|YP_002307592.1| - 0.0063 16.8 21.2 0.22 11.8 3.9 4.0 2 2 0 3 3 3 2 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF4140 PF13600.6 gi|212224356|ref|YP_002307592.1| - 0.015 15.8 26.8 0.081 13.4 2.2 4.9 2 2 1 3 3 3 0 N-terminal domain of unknown function (DUF4140) CLZ PF16526.5 gi|212224356|ref|YP_002307592.1| - 0.016 15.5 2.2 0.016 15.5 2.2 5.0 4 1 0 5 5 4 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels Seryl_tRNA_N PF02403.22 gi|212224356|ref|YP_002307592.1| - 0.024 14.9 8.7 0.024 14.9 8.7 3.9 2 2 0 3 3 3 0 Seryl-tRNA synthetase N-terminal domain DivIC PF04977.15 gi|212224356|ref|YP_002307592.1| - 0.03 14.1 32.8 0.13 12.1 2.2 5.9 3 2 4 7 7 6 0 Septum formation initiator PRKG1_interact PF15898.5 gi|212224356|ref|YP_002307592.1| - 0.051 14.5 35.4 6.9 7.6 3.9 4.4 1 1 2 3 3 3 0 cGMP-dependent protein kinase interacting domain DUF3926 PF13080.6 gi|212224356|ref|YP_002307592.1| - 0.06 13.3 0.4 0.23 11.4 0.4 2.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3926) FapA PF03961.13 gi|212224356|ref|YP_002307592.1| - 0.06 11.9 27.1 0.062 11.9 6.5 3.0 1 1 1 3 3 3 0 Flagellar Assembly Protein A FliD_C PF07195.12 gi|212224356|ref|YP_002307592.1| - 0.068 12.6 9.1 0.75 9.2 0.1 3.3 2 1 1 3 3 3 0 Flagellar hook-associated protein 2 C-terminus Lebercilin PF15619.6 gi|212224356|ref|YP_002307592.1| - 0.082 12.6 37.4 0.11 12.1 12.4 3.6 3 1 0 3 3 3 0 Ciliary protein causing Leber congenital amaurosis disease CoA_transf_3 PF02515.17 gi|212224356|ref|YP_002307592.1| - 0.11 11.6 0.5 0.22 10.6 0.5 1.6 1 0 0 1 1 1 0 CoA-transferase family III MtrG PF04210.13 gi|212224356|ref|YP_002307592.1| - 0.12 12.3 1.9 0.58 10.0 0.1 3.1 2 2 1 3 3 2 0 Tetrahydromethanopterin S-methyltransferase, subunit G Sod_Ni PF09055.11 gi|212224356|ref|YP_002307592.1| - 0.12 13.0 6.8 0.066 13.8 2.6 2.6 2 1 1 3 3 3 0 Nickel-containing superoxide dismutase FlxA PF14282.6 gi|212224356|ref|YP_002307592.1| - 0.15 12.1 0.1 0.15 12.1 0.1 3.2 3 1 0 3 3 3 0 FlxA-like protein DUF948 PF06103.11 gi|212224356|ref|YP_002307592.1| - 0.16 12.2 4.9 8.1 6.8 0.4 3.5 2 1 1 3 3 3 0 Bacterial protein of unknown function (DUF948) DASH_Dam1 PF08653.10 gi|212224356|ref|YP_002307592.1| - 0.2 11.5 11.2 4.7 7.1 0.2 5.3 4 2 2 6 6 6 0 DASH complex subunit Dam1 PKcGMP_CC PF16808.5 gi|212224356|ref|YP_002307592.1| - 0.21 11.5 27.2 0.041 13.7 8.0 4.6 5 0 0 5 5 3 0 Coiled-coil N-terminus of cGMP-dependent protein kinase DASH_Dad2 PF08654.10 gi|212224356|ref|YP_002307592.1| - 0.24 11.9 12.7 0.43 11.0 0.3 3.7 3 2 1 4 4 3 0 DASH complex subunit Dad2 DUF1664 PF07889.12 gi|212224356|ref|YP_002307592.1| - 0.41 10.7 18.8 1.6 8.8 1.9 4.0 1 1 3 4 4 4 0 Protein of unknown function (DUF1664) DUF5082 PF16888.5 gi|212224356|ref|YP_002307592.1| - 0.43 10.9 18.2 0.036 14.4 6.5 3.2 2 1 0 2 2 2 0 Domain of unknown function (DUF5082) IcmF-related PF06761.12 gi|212224356|ref|YP_002307592.1| - 0.44 10.0 9.2 5.4 6.4 3.6 2.6 3 0 0 3 3 2 0 Intracellular multiplication and human macrophage-killing NAS PF03059.16 gi|212224356|ref|YP_002307592.1| - 0.65 9.3 4.8 0.99 8.7 0.4 2.5 2 1 0 2 2 2 0 Nicotianamine synthase protein Spc42p PF11544.8 gi|212224356|ref|YP_002307592.1| - 0.95 9.5 9.9 0.54 10.3 3.1 3.0 2 0 0 2 2 2 0 Spindle pole body component Spc42p Spectrin PF00435.21 gi|212224356|ref|YP_002307592.1| - 0.99 9.9 23.6 0.23 12.0 1.2 4.5 2 1 1 4 4 3 0 Spectrin repeat GAS PF13851.6 gi|212224356|ref|YP_002307592.1| - 0.99 8.7 34.9 0.45 9.8 11.0 3.7 2 2 1 3 3 3 0 Growth-arrest specific micro-tubule binding DHR10 PF18595.1 gi|212224356|ref|YP_002307592.1| - 1.1 9.3 37.3 0.35 10.9 9.0 4.6 3 2 1 4 4 4 0 Designed helical repeat protein 10 domain Fmp27_WPPW PF10359.9 gi|212224356|ref|YP_002307592.1| - 1.1 8.0 25.4 0.067 12.0 3.7 3.1 2 1 0 2 2 2 0 RNA pol II promoter Fmp27 protein domain SlyX PF04102.12 gi|212224356|ref|YP_002307592.1| - 1.2 9.9 28.7 0.76 10.4 3.1 6.2 3 2 2 5 5 5 0 SlyX Fzo_mitofusin PF04799.13 gi|212224356|ref|YP_002307592.1| - 1.5 8.3 21.9 0.69 9.4 4.5 3.6 1 1 1 3 3 3 0 fzo-like conserved region Med9 PF07544.13 gi|212224356|ref|YP_002307592.1| - 1.6 8.8 25.1 1.4 9.0 3.4 4.1 2 2 0 3 3 3 0 RNA polymerase II transcription mediator complex subunit 9 ASPRs PF17641.2 gi|212224356|ref|YP_002307592.1| - 2.2 8.6 4.3 1.6 9.0 0.2 2.7 2 1 0 2 2 2 0 Ancylostoma-associated secreted protein related DUF2205 PF10224.9 gi|212224356|ref|YP_002307592.1| - 2.4 8.2 28.1 0.23 11.5 0.6 5.0 2 1 1 4 4 4 0 Short coiled-coil protein Syntaxin-6_N PF09177.11 gi|212224356|ref|YP_002307592.1| - 2.8 8.6 25.0 8.2 7.0 7.8 4.4 1 1 2 3 3 3 0 Syntaxin 6, N-terminal DUF4709 PF15821.5 gi|212224356|ref|YP_002307592.1| - 2.9 8.2 18.2 0.52 10.6 0.5 4.9 2 1 2 4 4 4 0 Domain of unknown function (DUF4709) EzrA PF06160.12 gi|212224356|ref|YP_002307592.1| - 3 5.9 32.1 0.15 10.2 5.4 3.2 1 1 1 3 3 3 0 Septation ring formation regulator, EzrA BORCS8 PF10167.9 gi|212224356|ref|YP_002307592.1| - 3 7.8 7.6 1.6 8.7 0.8 3.4 2 2 2 4 4 4 0 BLOC-1-related complex sub-unit 8 RPW8 PF05659.11 gi|212224356|ref|YP_002307592.1| - 3.1 7.5 22.4 0.24 11.1 1.2 4.0 1 1 3 4 4 4 0 Arabidopsis broad-spectrum mildew resistance protein RPW8 Csm1_N PF18504.1 gi|212224356|ref|YP_002307592.1| - 3.5 8.0 28.6 0.12 12.7 5.9 4.7 3 2 1 4 4 4 0 Csm1 N-terminal domain FUSC-like PF12805.7 gi|212224356|ref|YP_002307592.1| - 3.6 6.6 8.5 0.54 9.3 0.9 2.6 2 1 0 2 2 2 0 FUSC-like inner membrane protein yccS DUF3450 PF11932.8 gi|212224356|ref|YP_002307592.1| - 3.6 6.8 26.8 4.2 6.6 0.9 3.7 2 2 1 3 3 3 0 Protein of unknown function (DUF3450) Exonuc_VII_L PF02601.15 gi|212224356|ref|YP_002307592.1| - 3.9 7.0 22.9 4.8e+02 0.1 22.9 2.5 1 1 0 1 1 1 0 Exonuclease VII, large subunit ExsD PF16806.5 gi|212224356|ref|YP_002307592.1| - 5.6 6.8 12.1 0.33 10.9 1.3 2.8 1 1 0 3 3 3 0 Antiactivator protein ExsD Lectin_N PF03954.14 gi|212224356|ref|YP_002307592.1| - 5.6 6.7 11.3 6.4 6.5 2.7 3.8 1 1 2 3 3 3 0 Hepatic lectin, N-terminal domain Fib_alpha PF08702.10 gi|212224356|ref|YP_002307592.1| - 6.7 6.9 18.2 10 6.3 1.3 4.0 1 1 3 4 4 4 0 Fibrinogen alpha/beta chain family FAM76 PF16046.5 gi|212224356|ref|YP_002307592.1| - 6.7 6.0 18.5 0.79 9.0 4.7 2.5 3 0 0 3 3 2 0 FAM76 protein DUF724 PF05266.14 gi|212224356|ref|YP_002307592.1| - 6.9 6.5 33.0 0.27 11.0 10.2 3.2 1 1 2 3 3 3 0 Protein of unknown function (DUF724) Prefoldin PF02996.17 gi|212224356|ref|YP_002307592.1| - 7 6.6 22.8 2.3 8.1 2.1 4.9 3 2 2 5 5 5 0 Prefoldin subunit GIT_CC PF16559.5 gi|212224356|ref|YP_002307592.1| - 9.3 6.2 16.3 4.5 7.2 0.1 4.5 3 2 2 5 5 4 0 GIT coiled-coil Rho guanine nucleotide exchange factor LMBR1 PF04791.16 gi|212224356|ref|YP_002307592.1| - 9.7 5.0 18.6 0.18 10.7 9.5 2.0 1 1 1 2 2 2 0 LMBR1-like membrane protein PPV_E1_N PF00524.18 gi|212224356|ref|YP_002307592.1| - 9.9 6.6 8.8 2 8.9 1.4 3.0 2 1 1 3 3 3 0 E1 Protein, N terminal domain Rpr2 PF04032.16 gi|212224358|ref|YP_002307594.1| - 7.4e-19 67.8 0.2 7.4e-19 67.8 0.2 1.7 2 0 0 2 2 2 1 RNAse P Rpr2/Rpp21/SNM1 subunit domain DUF4294 PF14127.6 gi|212224358|ref|YP_002307594.1| - 0.37 10.7 5.7 0.15 12.0 1.5 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4294) CW_binding_2 PF04122.12 gi|212224359|ref|YP_002307595.1| - 4.5e-08 33.6 0.4 0.00076 20.1 0.0 2.5 2 0 0 2 2 2 2 Putative cell wall binding repeat 2 YfdX PF10938.8 gi|212224359|ref|YP_002307595.1| - 0.0071 16.3 5.0 0.49 10.3 0.4 2.4 1 1 1 2 2 2 2 YfdX protein XdhC_C PF13478.6 gi|212224359|ref|YP_002307595.1| - 0.078 13.5 0.1 1.1 9.8 0.0 2.4 2 0 0 2 2 2 0 XdhC Rossmann domain DUF4363 PF14276.6 gi|212224359|ref|YP_002307595.1| - 0.096 12.8 2.9 1.7 8.8 0.0 3.0 2 1 1 3 3 3 0 Domain of unknown function (DUF4363) HCV_NS4a PF01006.20 gi|212224359|ref|YP_002307595.1| - 0.18 11.6 0.9 0.43 10.4 0.2 2.0 2 0 0 2 2 2 0 Hepatitis C virus non-structural protein NS4a RapH_N PF18801.1 gi|212224359|ref|YP_002307595.1| - 0.25 11.5 3.4 0.32 11.1 0.1 2.6 2 0 0 2 2 2 0 response regulator aspartate phosphatase H, N terminal Ank_2 PF12796.7 gi|212224359|ref|YP_002307595.1| - 0.29 11.8 1.3 11 6.6 0.0 2.7 2 2 0 2 2 2 0 Ankyrin repeats (3 copies) Cyclase PF04199.13 gi|212224360|ref|YP_002307596.1| - 4e-22 78.9 0.0 7.5e-22 78.0 0.0 1.4 1 1 0 1 1 1 1 Putative cyclase AdoHcyase PF05221.17 gi|212224361|ref|YP_002307597.1| - 4.8e-68 229.5 0.0 2.6e-36 125.3 0.0 2.0 1 1 1 2 2 2 2 S-adenosyl-L-homocysteine hydrolase AdoHcyase_NAD PF00670.21 gi|212224361|ref|YP_002307597.1| - 8.3e-51 172.3 0.1 1.4e-50 171.5 0.1 1.4 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 2-Hacid_dh_C PF02826.19 gi|212224361|ref|YP_002307597.1| - 4.7e-09 35.8 0.0 1.2e-08 34.6 0.0 1.6 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IlvN PF07991.12 gi|212224361|ref|YP_002307597.1| - 2.7e-06 27.1 0.0 5.3e-06 26.1 0.0 1.4 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain 3HCDH_N PF02737.18 gi|212224361|ref|YP_002307597.1| - 0.0024 17.8 4.5 0.18 11.7 0.5 2.5 3 0 0 3 3 3 2 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain THF_DHG_CYH_C PF02882.19 gi|212224361|ref|YP_002307597.1| - 0.011 15.1 0.3 0.06 12.7 0.3 2.0 1 1 0 1 1 1 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain TrkA_N PF02254.18 gi|212224361|ref|YP_002307597.1| - 0.017 15.4 0.5 0.041 14.1 0.2 1.8 2 0 0 2 2 2 0 TrkA-N domain Pyr_redox_2 PF07992.14 gi|212224361|ref|YP_002307597.1| - 0.019 14.2 0.1 0.041 13.1 0.1 1.6 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase AlaDh_PNT_C PF01262.21 gi|212224361|ref|YP_002307597.1| - 0.037 13.3 0.2 0.077 12.3 0.2 1.5 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain NifT PF06988.11 gi|212224361|ref|YP_002307597.1| - 0.052 13.3 0.0 0.14 12.0 0.0 1.7 1 0 0 1 1 1 0 NifT/FixU protein Peptidase_C14 PF00656.22 gi|212224362|ref|YP_002307598.1| - 2.3e-22 80.2 0.0 2.7e-22 79.9 0.0 1.1 1 0 0 1 1 1 1 Caspase domain Peptidase_C13 PF01650.18 gi|212224362|ref|YP_002307598.1| - 0.001 18.6 1.3 0.3 10.6 0.3 3.0 1 1 1 2 2 2 2 Peptidase C13 family EVE PF01878.18 gi|212224362|ref|YP_002307598.1| - 0.18 11.8 0.0 0.3 11.1 0.0 1.3 1 0 0 1 1 1 0 EVE domain TrmO PF01980.16 gi|212224363|ref|YP_002307599.1| - 6.9e-25 87.6 0.0 1.3e-24 86.7 0.0 1.4 1 0 0 1 1 1 1 tRNA-methyltransferase O HD_3 PF13023.6 gi|212224364|ref|YP_002307600.1| - 2.9e-32 111.9 0.0 3.4e-32 111.7 0.0 1.0 1 0 0 1 1 1 1 HD domain HD_2 PF12917.7 gi|212224364|ref|YP_002307600.1| - 8.7e-19 68.0 0.0 1.2e-18 67.5 0.0 1.2 1 0 0 1 1 1 1 HD containing hydrolase-like enzyme HD PF01966.22 gi|212224364|ref|YP_002307600.1| - 1.8e-11 44.3 1.8 1.9e-11 44.2 0.7 1.7 2 0 0 2 2 2 1 HD domain DUF1266 PF06889.11 gi|212224364|ref|YP_002307600.1| - 0.032 14.3 1.3 0.085 12.9 1.1 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF1266) MMR_HSR1 PF01926.23 gi|212224366|ref|YP_002307602.1| - 1.1e-22 80.3 0.1 1.6e-22 79.8 0.1 1.2 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.18 gi|212224366|ref|YP_002307602.1| - 4.8e-14 52.2 0.0 7.2e-14 51.6 0.0 1.3 1 1 0 1 1 1 1 Ferrous iron transport protein B GTP_EFTU PF00009.27 gi|212224366|ref|YP_002307602.1| - 2.4e-09 37.0 0.4 6.1e-06 25.9 0.0 2.3 2 1 0 2 2 2 2 Elongation factor Tu GTP binding domain Dynamin_N PF00350.23 gi|212224366|ref|YP_002307602.1| - 2.2e-08 34.3 0.2 0.00079 19.5 0.2 2.3 1 1 1 2 2 2 2 Dynamin family RsgA_GTPase PF03193.16 gi|212224366|ref|YP_002307602.1| - 2e-06 27.8 0.3 0.054 13.4 0.0 2.4 2 1 0 2 2 2 2 RsgA GTPase cobW PF02492.19 gi|212224366|ref|YP_002307602.1| - 3.2e-06 26.8 0.3 1.9e-05 24.3 0.0 1.9 1 1 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain Roc PF08477.13 gi|212224366|ref|YP_002307602.1| - 3.9e-05 23.8 0.2 0.0076 16.5 0.0 2.2 2 0 0 2 2 2 1 Ras of Complex, Roc, domain of DAPkinase Septin PF00735.18 gi|212224366|ref|YP_002307602.1| - 4.9e-05 22.8 1.4 0.033 13.5 0.0 2.1 1 1 1 2 2 2 2 Septin PduV-EutP PF10662.9 gi|212224366|ref|YP_002307602.1| - 0.00014 21.7 0.3 0.082 12.7 0.0 2.2 2 0 0 2 2 2 2 Ethanolamine utilisation - propanediol utilisation GBP PF02263.19 gi|212224366|ref|YP_002307602.1| - 0.00054 19.3 0.0 0.00086 18.7 0.0 1.4 1 0 0 1 1 1 1 Guanylate-binding protein, N-terminal domain Arf PF00025.21 gi|212224366|ref|YP_002307602.1| - 0.0007 19.1 0.8 0.41 10.1 0.1 2.2 2 0 0 2 2 2 2 ADP-ribosylation factor family MMR_HSR1_Xtn PF16897.5 gi|212224366|ref|YP_002307602.1| - 0.00077 19.4 0.1 0.0012 18.8 0.1 1.3 1 0 0 1 1 1 1 C-terminal region of MMR_HSR1 domain Ras PF00071.22 gi|212224366|ref|YP_002307602.1| - 0.0024 17.5 0.2 0.025 14.2 0.2 2.2 1 1 0 1 1 1 1 Ras family ATP_bind_1 PF03029.17 gi|212224366|ref|YP_002307602.1| - 0.015 15.1 0.1 0.83 9.4 0.0 2.7 2 1 0 2 2 2 0 Conserved hypothetical ATP binding protein AAA_28 PF13521.6 gi|212224366|ref|YP_002307602.1| - 0.025 14.8 0.1 0.062 13.5 0.1 1.7 1 0 0 1 1 1 0 AAA domain SOCS_box PF07525.16 gi|212224366|ref|YP_002307602.1| - 0.034 14.5 0.3 1.2 9.6 0.0 2.5 2 0 0 2 2 2 0 SOCS box ABC_tran PF00005.27 gi|212224366|ref|YP_002307602.1| - 0.053 14.0 1.5 0.07 13.6 1.5 1.5 1 1 0 1 1 1 0 ABC transporter AAA_29 PF13555.6 gi|212224366|ref|YP_002307602.1| - 0.082 12.7 0.1 0.15 11.8 0.1 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|212224366|ref|YP_002307602.1| - 0.19 12.0 0.3 1.4 9.2 0.3 2.1 1 1 0 1 1 1 0 AAA domain NOG1 PF06858.14 gi|212224366|ref|YP_002307602.1| - 0.27 11.0 1.6 0.36 10.6 0.3 2.0 2 1 0 2 2 1 0 Nucleolar GTP-binding protein 1 (NOG1) UPF0047 PF01894.17 gi|212224367|ref|YP_002307603.1| - 2.1e-37 127.8 0.0 2.4e-37 127.6 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein family UPF0047 FliL PF03748.14 gi|212224367|ref|YP_002307603.1| - 0.14 12.7 0.0 0.18 12.4 0.0 1.3 1 0 0 1 1 1 0 Flagellar basal body-associated protein FliL TPR_14 PF13428.6 gi|212224369|ref|YP_002307605.1| - 0.0026 18.4 0.6 47 5.2 0.0 5.5 6 1 1 7 7 7 1 Tetratricopeptide repeat RPN7 PF10602.9 gi|212224369|ref|YP_002307605.1| - 0.037 13.7 0.3 7.8 6.2 0.0 3.9 3 2 1 4 4 4 0 26S proteasome subunit RPN7 IFS PF16718.5 gi|212224369|ref|YP_002307605.1| - 0.098 12.7 0.3 2.3 8.3 0.0 2.3 2 0 0 2 2 2 0 Immunity factor for SPN UPF0020 PF01170.18 gi|212224370|ref|YP_002307606.1| - 2.7e-15 56.6 0.0 3e-13 49.9 0.0 3.1 2 1 0 2 2 2 1 Putative RNA methylase family UPF0020 N6_N4_Mtase PF01555.18 gi|212224370|ref|YP_002307606.1| - 1.9e-05 24.5 0.1 0.0007 19.4 0.0 2.7 2 1 0 3 3 3 1 DNA methylase Methyltransf_31 PF13847.6 gi|212224370|ref|YP_002307606.1| - 2.9e-05 23.9 0.0 4.3e-05 23.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_15 PF09445.10 gi|212224370|ref|YP_002307606.1| - 0.03 13.9 0.0 0.044 13.4 0.0 1.3 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase Methyltransf_11 PF08241.12 gi|212224370|ref|YP_002307606.1| - 0.033 14.8 0.0 0.15 12.7 0.0 1.9 2 0 0 2 2 2 0 Methyltransferase domain Pre-PUA PF17832.1 gi|212224370|ref|YP_002307606.1| - 0.062 14.0 0.0 0.25 12.1 0.0 1.9 2 0 0 2 2 2 0 Pre-PUA-like domain Methyltransf_5 PF01795.19 gi|212224370|ref|YP_002307606.1| - 0.073 12.6 0.0 0.1 12.1 0.0 1.2 1 0 0 1 1 1 0 MraW methylase family Cons_hypoth95 PF03602.15 gi|212224370|ref|YP_002307606.1| - 0.11 12.1 0.0 0.21 11.2 0.0 1.4 1 0 0 1 1 1 0 Conserved hypothetical protein 95 MTS PF05175.14 gi|212224370|ref|YP_002307606.1| - 0.14 11.7 0.0 0.25 10.9 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase small domain Methyltransf_23 PF13489.6 gi|212224370|ref|YP_002307606.1| - 0.17 11.7 0.0 0.32 10.8 0.0 1.5 1 1 0 1 1 1 0 Methyltransferase domain CoA_binding_2 PF13380.6 gi|212224371|ref|YP_002307607.1| - 2.5e-07 31.2 0.0 2.6e-07 31.1 0.0 1.0 1 0 0 1 1 1 1 CoA binding domain NfeD PF01957.18 gi|212224373|ref|YP_002307609.1| - 3.1e-15 56.3 5.5 3.1e-15 56.3 5.5 1.5 2 0 0 2 2 2 1 NfeD-like C-terminal, partner-binding DUF45 PF01863.17 gi|212224374|ref|YP_002307610.1| - 2.7e-48 164.8 0.3 7.4e-48 163.3 0.3 1.6 1 1 0 1 1 1 1 Protein of unknown function DUF45 WLM PF08325.10 gi|212224374|ref|YP_002307610.1| - 0.0058 16.7 0.2 0.01 15.9 0.2 1.4 1 0 0 1 1 1 1 WLM domain CheB_methylest PF01339.17 gi|212224374|ref|YP_002307610.1| - 0.015 15.1 0.0 0.021 14.6 0.0 1.2 1 0 0 1 1 1 0 CheB methylesterase Radical_SAM PF04055.21 gi|212224375|ref|YP_002307611.1| - 1.6e-10 41.6 0.1 2.6e-10 40.9 0.1 1.3 1 0 0 1 1 1 1 Radical SAM superfamily DUF4147 PF13660.6 gi|212224377|ref|YP_002307613.1| - 3.4e-81 272.1 0.0 5.7e-81 271.4 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4147) MOFRL PF05161.13 gi|212224377|ref|YP_002307613.1| - 2.4e-33 114.6 1.9 6e-33 113.3 1.9 1.8 1 0 0 1 1 1 1 MOFRL family DUF371 PF04027.13 gi|212224378|ref|YP_002307614.1| - 3.9e-50 169.3 0.1 4.3e-50 169.1 0.1 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF371) Ribosomal_S17e PF00833.18 gi|212224379|ref|YP_002307615.1| - 2.1e-16 59.9 0.6 2.5e-16 59.7 0.6 1.0 1 0 0 1 1 1 1 Ribosomal S17 HTH_5 PF01022.20 gi|212224380|ref|YP_002307616.1| - 3.9e-13 49.0 1.1 6.2e-13 48.4 0.2 1.8 2 0 0 2 2 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|212224380|ref|YP_002307616.1| - 8.4e-12 45.0 1.8 1.4e-11 44.3 0.3 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|212224380|ref|YP_002307616.1| - 1.7e-05 24.6 1.1 0.00012 21.8 0.2 2.2 2 0 0 2 2 2 1 MarR family HTH_24 PF13412.6 gi|212224380|ref|YP_002307616.1| - 0.00011 21.6 1.9 0.0018 17.8 1.9 2.6 1 1 0 1 1 1 1 Winged helix-turn-helix DNA-binding PadR PF03551.14 gi|212224380|ref|YP_002307616.1| - 0.00012 22.0 0.9 0.00052 19.9 0.1 2.4 2 1 0 2 2 2 1 Transcriptional regulator PadR-like family TrmB PF01978.19 gi|212224380|ref|YP_002307616.1| - 0.00013 21.8 0.1 0.00028 20.7 0.1 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB ArsR PF09824.9 gi|212224380|ref|YP_002307616.1| - 0.00041 20.0 0.1 0.013 15.1 0.0 2.1 2 0 0 2 2 2 1 ArsR transcriptional regulator HTH_CodY PF08222.11 gi|212224380|ref|YP_002307616.1| - 0.0027 17.2 0.1 0.0067 16.0 0.0 1.6 2 0 0 2 2 2 1 CodY helix-turn-helix domain HTH_11 PF08279.12 gi|212224380|ref|YP_002307616.1| - 0.0072 16.3 0.1 0.016 15.2 0.1 1.6 1 0 0 1 1 1 1 HTH domain LexA_DNA_bind PF01726.16 gi|212224380|ref|YP_002307616.1| - 0.017 14.8 0.1 0.31 10.9 0.0 2.4 2 0 0 2 2 2 0 LexA DNA binding domain Sulfolobus_pRN PF05584.11 gi|212224380|ref|YP_002307616.1| - 0.032 14.3 0.5 0.091 12.8 0.5 1.8 1 0 0 1 1 1 0 Sulfolobus plasmid regulatory protein HTH_10 PF04967.12 gi|212224380|ref|YP_002307616.1| - 0.032 14.0 0.0 0.091 12.6 0.0 1.7 1 0 0 1 1 1 0 HTH DNA binding domain Cauli_AT PF03233.13 gi|212224380|ref|YP_002307616.1| - 0.036 14.0 0.2 0.057 13.3 0.2 1.3 1 0 0 1 1 1 0 Aphid transmission protein GntR PF00392.21 gi|212224380|ref|YP_002307616.1| - 0.047 13.3 2.4 0.075 12.7 0.2 2.4 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family Rrf2 PF02082.20 gi|212224380|ref|YP_002307616.1| - 0.048 14.0 0.9 3.5 8.1 0.0 2.2 2 0 0 2 2 2 0 Transcriptional regulator HxlR PF01638.17 gi|212224380|ref|YP_002307616.1| - 0.063 13.1 0.1 0.063 13.1 0.1 2.1 2 1 0 2 2 2 0 HxlR-like helix-turn-helix DprA_WH PF17782.1 gi|212224380|ref|YP_002307616.1| - 0.11 12.6 0.5 0.27 11.4 0.5 1.7 1 0 0 1 1 1 0 DprA winged helix domain DUF2513 PF10711.9 gi|212224380|ref|YP_002307616.1| - 0.17 12.2 0.4 1.1 9.6 0.0 2.1 2 0 0 2 2 2 0 Hypothetical protein (DUF2513) PALP PF00291.25 gi|212224381|ref|YP_002307617.1| - 3.4e-73 246.6 1.4 4e-73 246.4 1.4 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme ACP_syn_III_C PF08541.10 gi|212224381|ref|YP_002307617.1| - 0.055 13.6 0.1 0.41 10.8 0.0 2.1 2 0 0 2 2 2 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal HypA PF01155.19 gi|212224381|ref|YP_002307617.1| - 0.11 12.6 1.7 0.21 11.6 1.7 1.5 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Zn_Tnp_IS1595 PF12760.7 gi|212224381|ref|YP_002307617.1| - 0.21 11.6 2.4 0.4 10.7 2.4 1.4 1 0 0 1 1 1 0 Transposase zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|212224381|ref|YP_002307617.1| - 0.34 10.7 7.1 1.3 8.8 7.2 1.9 1 1 0 1 1 1 0 zinc-ribbon domain ADK_lid PF05191.14 gi|212224381|ref|YP_002307617.1| - 0.42 10.6 4.8 1.3 9.1 4.8 1.8 1 1 0 1 1 1 0 Adenylate kinase, active site lid Zn-ribbon_8 PF09723.10 gi|212224381|ref|YP_002307617.1| - 1.6 8.9 4.3 4.6 7.4 0.1 2.3 1 1 1 2 2 2 0 Zinc ribbon domain TK PF00265.18 gi|212224382|ref|YP_002307618.1| - 9.8e-52 175.4 0.0 1.1e-51 175.2 0.0 1.0 1 0 0 1 1 1 1 Thymidine kinase AAA_14 PF13173.6 gi|212224382|ref|YP_002307618.1| - 0.0019 18.3 0.0 0.0043 17.1 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|212224382|ref|YP_002307618.1| - 0.13 12.5 0.1 0.52 10.6 0.1 2.0 1 1 0 1 1 1 0 AAA domain RuBisCO_large PF00016.20 gi|212224383|ref|YP_002307619.1| - 3.9e-96 321.8 0.0 4.7e-96 321.5 0.0 1.1 1 0 0 1 1 1 1 Ribulose bisphosphate carboxylase large chain, catalytic domain RuBisCO_large_N PF02788.16 gi|212224383|ref|YP_002307619.1| - 2.4e-44 150.4 0.0 8.3e-44 148.6 0.0 1.9 2 0 0 2 2 2 1 Ribulose bisphosphate carboxylase large chain, N-terminal domain CBFD_NFYB_HMF PF00808.23 gi|212224384|ref|YP_002307620.1| - 4e-21 75.0 2.1 4.4e-21 74.9 2.1 1.0 1 0 0 1 1 1 1 Histone-like transcription factor (CBF/NF-Y) and archaeal histone Histone PF00125.24 gi|212224384|ref|YP_002307620.1| - 1.5e-08 35.1 0.5 1.6e-08 35.0 0.5 1.1 1 0 0 1 1 1 1 Core histone H2A/H2B/H3/H4 TAF PF02969.17 gi|212224384|ref|YP_002307620.1| - 2.2e-08 34.1 0.8 2.4e-08 34.0 0.8 1.1 1 0 0 1 1 1 1 TATA box binding protein associated factor (TAF) CENP-S PF15630.6 gi|212224384|ref|YP_002307620.1| - 3.1e-05 24.3 0.1 3.3e-05 24.2 0.1 1.1 1 0 0 1 1 1 1 CENP-S protein CENP-T_C PF15511.6 gi|212224384|ref|YP_002307620.1| - 9.4e-05 22.5 0.3 0.0001 22.4 0.3 1.1 1 0 0 1 1 1 1 Centromere kinetochore component CENP-T histone fold TFIID-31kDa PF02291.15 gi|212224384|ref|YP_002307620.1| - 0.00017 21.6 0.1 0.00018 21.5 0.1 1.0 1 0 0 1 1 1 1 Transcription initiation factor IID, 31kD subunit TFIID-18kDa PF02269.16 gi|212224384|ref|YP_002307620.1| - 0.0023 17.9 0.0 0.0025 17.8 0.0 1.1 1 0 0 1 1 1 1 Transcription initiation factor IID, 18kD subunit DUF1931 PF09123.11 gi|212224384|ref|YP_002307620.1| - 0.0025 18.0 0.9 0.003 17.7 0.9 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1931) TFIID_20kDa PF03847.13 gi|212224384|ref|YP_002307620.1| - 0.0066 16.9 0.3 0.0073 16.8 0.3 1.1 1 0 0 1 1 1 1 Transcription initiation factor TFIID subunit A Bromo_TP PF07524.13 gi|212224384|ref|YP_002307620.1| - 0.036 14.1 0.0 0.04 13.9 0.0 1.1 1 0 0 1 1 1 0 Bromodomain associated Metallophos_2 PF12850.7 gi|212224385|ref|YP_002307621.1| - 4.8e-28 98.4 0.0 5.6e-28 98.2 0.0 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|212224385|ref|YP_002307621.1| - 5.2e-09 36.9 0.6 5.7e-07 30.2 0.0 2.1 1 1 1 2 2 2 2 Calcineurin-like phosphoesterase TFIIB PF00382.19 gi|212224386|ref|YP_002307622.1| - 1.2e-40 137.4 3.8 1.3e-19 70.0 0.1 2.2 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.12 gi|212224386|ref|YP_002307622.1| - 4.9e-18 64.4 1.7 6e-18 64.1 0.9 1.6 2 0 0 2 2 2 1 TFIIB zinc-binding Sigma70_r4 PF04545.16 gi|212224386|ref|YP_002307622.1| - 7.5e-05 22.2 2.1 0.0015 18.0 0.2 3.1 3 0 0 3 3 3 1 Sigma-70, region 4 A2L_zn_ribbon PF08792.10 gi|212224386|ref|YP_002307622.1| - 0.0013 18.4 0.6 0.0022 17.6 0.6 1.3 1 0 0 1 1 1 1 A2L zinc ribbon domain FYDLN_acid PF09538.10 gi|212224386|ref|YP_002307622.1| - 0.0025 18.5 0.0 0.0047 17.6 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (FYDLN_acid) Cyclin_N PF00134.23 gi|212224386|ref|YP_002307622.1| - 0.0025 17.5 0.1 0.1 12.3 0.0 2.2 2 0 0 2 2 2 1 Cyclin, N-terminal domain HARE-HTH PF05066.13 gi|212224386|ref|YP_002307622.1| - 0.0092 16.3 0.1 0.41 11.1 0.1 2.5 2 0 0 2 2 2 1 HB1, ASXL, restriction endonuclease HTH domain Prim_Zn_Ribbon PF08273.12 gi|212224386|ref|YP_002307622.1| - 0.02 15.2 0.3 0.044 14.1 0.3 1.6 1 0 0 1 1 1 0 Zinc-binding domain of primase-helicase Cyclin_C PF02984.19 gi|212224386|ref|YP_002307622.1| - 0.024 14.7 0.0 0.41 10.7 0.0 2.2 2 0 0 2 2 2 0 Cyclin, C-terminal domain HTH_AsnC-type PF13404.6 gi|212224386|ref|YP_002307622.1| - 0.026 14.4 0.2 0.13 12.2 0.1 2.2 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain Sigma70_r4_2 PF08281.12 gi|212224386|ref|YP_002307622.1| - 0.027 14.1 0.1 0.12 12.0 0.1 2.2 1 0 0 1 1 1 0 Sigma-70, region 4 DUF2318 PF10080.9 gi|212224386|ref|YP_002307622.1| - 0.034 14.3 0.3 0.064 13.4 0.3 1.4 1 0 0 1 1 1 0 Predicted membrane protein (DUF2318) HTH_23 PF13384.6 gi|212224386|ref|YP_002307622.1| - 0.042 13.7 0.1 0.33 10.8 0.0 2.6 2 0 0 2 2 2 0 Homeodomain-like domain GerE PF00196.19 gi|212224386|ref|YP_002307622.1| - 0.047 13.2 0.7 0.31 10.6 0.1 2.4 2 0 0 2 2 2 0 Bacterial regulatory proteins, luxR family UPF0253 PF06786.12 gi|212224386|ref|YP_002307622.1| - 0.075 13.3 0.2 1.2 9.5 0.1 2.4 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0253) zf-RRN7 PF11781.8 gi|212224386|ref|YP_002307622.1| - 0.088 12.5 3.2 1.8 8.3 3.3 2.2 1 1 0 1 1 1 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 zf-C2H2_12 PF18658.1 gi|212224386|ref|YP_002307622.1| - 0.098 12.2 1.2 0.22 11.1 0.1 2.2 1 1 1 2 2 2 0 Zinc-finger C2H2-type DZR PF12773.7 gi|212224386|ref|YP_002307622.1| - 0.12 12.4 0.2 0.21 11.6 0.2 1.3 1 0 0 1 1 1 0 Double zinc ribbon YceG PF02618.16 gi|212224386|ref|YP_002307622.1| - 0.15 11.6 0.1 0.29 10.6 0.1 1.4 2 0 0 2 2 2 0 YceG-like family Auto_anti-p27 PF06677.12 gi|212224386|ref|YP_002307622.1| - 0.17 12.1 1.6 0.32 11.2 1.6 1.4 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zf-ribbon_3 PF13248.6 gi|212224386|ref|YP_002307622.1| - 0.59 9.6 3.5 8.8 5.9 3.5 2.2 1 1 0 1 1 1 0 zinc-ribbon domain Gar1 PF04410.14 gi|212224387|ref|YP_002307623.1| - 3.9e-10 39.7 0.0 4.3e-10 39.6 0.0 1.1 1 0 0 1 1 1 1 Gar1/Naf1 RNA binding region PfkB PF00294.24 gi|212224388|ref|YP_002307624.1| - 6.3e-11 42.1 0.0 2.2e-05 23.9 0.0 2.1 2 0 0 2 2 2 2 pfkB family carbohydrate kinase eRF1_3 PF03465.15 gi|212224388|ref|YP_002307624.1| - 0.17 12.4 0.0 0.3 11.6 0.0 1.4 1 0 0 1 1 1 0 eRF1 domain 3 NUDIX PF00293.28 gi|212224389|ref|YP_002307625.1| - 3.4e-22 78.9 0.0 5e-22 78.4 0.0 1.2 1 0 0 1 1 1 1 NUDIX domain DUF4916 PF16262.5 gi|212224389|ref|YP_002307625.1| - 0.024 14.1 0.0 0.21 11.1 0.0 2.0 1 1 0 1 1 1 0 Domain of unknown function (DUF4916) DUF2521 PF10730.9 gi|212224389|ref|YP_002307625.1| - 0.16 12.0 0.0 0.36 10.8 0.0 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF2521) DUF498 PF04430.14 gi|212224390|ref|YP_002307626.1| - 6.1e-11 42.4 0.0 6.8e-11 42.2 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF498/DUF598) DUF3879 PF12995.7 gi|212224390|ref|YP_002307626.1| - 0.14 11.9 0.0 0.17 11.6 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function, E. rectale Gene description (DUF3879) 12TM_1 PF09847.9 gi|212224391|ref|YP_002307627.1| - 2.4e-79 267.6 46.9 2.7e-79 267.4 46.9 1.0 1 0 0 1 1 1 1 Membrane protein of 12 TMs ABC_tran PF00005.27 gi|212224392|ref|YP_002307628.1| - 2.9e-28 99.1 0.0 4.4e-28 98.5 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|212224392|ref|YP_002307628.1| - 7.2e-15 55.6 1.0 3.4e-08 33.7 0.1 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system Rad17 PF03215.15 gi|212224392|ref|YP_002307628.1| - 0.00066 19.7 0.0 0.0019 18.2 0.0 1.7 2 0 0 2 2 2 1 Rad17 P-loop domain AAA_22 PF13401.6 gi|212224392|ref|YP_002307628.1| - 0.0014 18.9 0.2 2.4 8.4 0.0 2.4 2 0 0 2 2 2 2 AAA domain AAA_29 PF13555.6 gi|212224392|ref|YP_002307628.1| - 0.0042 16.8 0.3 0.0082 15.9 0.3 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_30 PF13604.6 gi|212224392|ref|YP_002307628.1| - 0.0072 16.1 0.1 0.079 12.7 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_23 PF13476.6 gi|212224392|ref|YP_002307628.1| - 0.008 16.7 1.3 0.012 16.1 1.3 1.7 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|212224392|ref|YP_002307628.1| - 0.012 15.1 0.1 0.67 9.3 0.1 2.2 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA PF00004.29 gi|212224392|ref|YP_002307628.1| - 0.024 15.1 0.1 0.15 12.5 0.1 2.1 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) UTP15_C PF09384.10 gi|212224392|ref|YP_002307628.1| - 0.06 13.0 0.3 0.26 10.9 0.1 1.9 1 1 1 2 2 2 0 UTP15 C terminal AAA_18 PF13238.6 gi|212224392|ref|YP_002307628.1| - 0.15 12.6 0.1 0.53 10.8 0.1 2.1 1 1 0 1 1 1 0 AAA domain Mg_chelatase PF01078.21 gi|212224392|ref|YP_002307628.1| - 0.16 11.3 0.0 0.31 10.4 0.0 1.5 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI SbcCD_C PF13558.6 gi|212224392|ref|YP_002307628.1| - 0.16 12.2 0.0 0.28 11.4 0.0 1.5 1 0 0 1 1 1 0 Putative exonuclease SbcCD, C subunit IstB_IS21 PF01695.17 gi|212224392|ref|YP_002307628.1| - 0.18 11.5 0.3 14 5.3 0.1 2.2 2 0 0 2 2 2 0 IstB-like ATP binding protein OrfB_IS605 PF01385.19 gi|212224393|ref|YP_002307629.1| - 3.5e-30 104.7 0.1 7.2e-30 103.7 0.1 1.5 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.11 gi|212224393|ref|YP_002307629.1| - 4.9e-21 74.4 0.0 8.8e-21 73.6 0.0 1.4 1 0 0 1 1 1 1 Putative transposase DNA-binding domain RuvX PF03652.15 gi|212224393|ref|YP_002307629.1| - 0.004 17.5 0.1 0.012 15.9 0.1 1.8 1 1 0 1 1 1 1 Holliday junction resolvase MAP65_ASE1 PF03999.12 gi|212224393|ref|YP_002307629.1| - 0.0085 14.8 0.2 0.012 14.3 0.2 1.1 1 0 0 1 1 1 1 Microtubule associated protein (MAP65/ASE1 family) Peptidase_S30 PF01577.16 gi|212224393|ref|YP_002307629.1| - 0.021 14.4 3.7 0.12 11.9 1.6 2.4 2 0 0 2 2 2 0 Potyvirus P1 protease HTH_OrfB_IS605 PF12323.8 gi|212224393|ref|YP_002307629.1| - 0.028 13.9 0.3 0.086 12.3 0.3 1.9 1 0 0 1 1 1 0 Helix-turn-helix domain Diphthami_syn_2 PF01902.17 gi|212224396|ref|YP_002307632.1| - 9.5e-88 293.4 1.5 1.1e-87 293.2 1.5 1.0 1 0 0 1 1 1 1 Diphthamide synthase QueC PF06508.13 gi|212224396|ref|YP_002307632.1| - 0.0046 16.5 0.0 0.0063 16.0 0.0 1.4 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC tRNA_Me_trans PF03054.16 gi|212224396|ref|YP_002307632.1| - 0.024 13.4 0.0 0.035 12.9 0.0 1.4 1 1 0 1 1 1 0 tRNA methyl transferase ThiI PF02568.14 gi|212224396|ref|YP_002307632.1| - 0.042 13.4 0.0 0.08 12.5 0.0 1.5 1 0 0 1 1 1 0 Thiamine biosynthesis protein (ThiI) NTP_transf_3 PF12804.7 gi|212224397|ref|YP_002307633.1| - 8.8e-17 61.9 0.0 4.2e-16 59.7 0.0 2.0 2 0 0 2 2 2 1 MobA-like NTP transferase domain CDP-OH_P_transf PF01066.21 gi|212224397|ref|YP_002307633.1| - 5.2e-11 43.2 0.4 5.2e-11 43.2 0.4 2.9 3 1 0 3 3 3 1 CDP-alcohol phosphatidyltransferase NTP_transferase PF00483.23 gi|212224397|ref|YP_002307633.1| - 1.2e-06 28.3 0.0 3.3e-06 26.9 0.0 1.8 1 1 0 1 1 1 1 Nucleotidyl transferase IspD PF01128.19 gi|212224397|ref|YP_002307633.1| - 2.2e-05 24.3 0.0 5.9e-05 22.9 0.0 1.7 2 0 0 2 2 2 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Inos-1-P_synth PF01658.17 gi|212224398|ref|YP_002307634.1| - 6.3e-20 71.4 0.0 1.1e-19 70.7 0.0 1.4 1 0 0 1 1 1 1 Myo-inositol-1-phosphate synthase NAD_binding_5 PF07994.12 gi|212224398|ref|YP_002307634.1| - 3.6e-08 33.2 0.0 4.3e-08 32.9 0.0 1.3 1 0 0 1 1 1 1 Myo-inositol-1-phosphate synthase DUF4443 PF14544.6 gi|212224399|ref|YP_002307635.1| - 3.2e-49 165.8 0.1 5.1e-49 165.2 0.1 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4443) Ribosomal_S19e PF01090.19 gi|212224399|ref|YP_002307635.1| - 0.024 14.4 0.5 0.059 13.1 0.1 1.7 2 0 0 2 2 2 0 Ribosomal protein S19e HTH_45 PF14947.6 gi|212224399|ref|YP_002307635.1| - 0.07 13.1 0.0 0.15 12.1 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix SMC_ScpB PF04079.16 gi|212224399|ref|YP_002307635.1| - 0.074 12.7 0.1 0.17 11.5 0.0 1.7 2 0 0 2 2 2 0 Segregation and condensation complex subunit ScpB OMPdecase PF00215.24 gi|212224400|ref|YP_002307636.1| - 2.5e-37 128.7 0.1 3.8e-37 128.1 0.1 1.3 1 1 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family DHO_dh PF01180.21 gi|212224400|ref|YP_002307636.1| - 0.088 12.0 0.0 0.16 11.2 0.0 1.4 1 0 0 1 1 1 0 Dihydroorotate dehydrogenase PUA PF01472.20 gi|212224401|ref|YP_002307637.1| - 2.6e-24 85.0 1.4 2.6e-24 85.0 1.4 2.0 3 0 0 3 3 3 1 PUA domain Pre-PUA PF17832.1 gi|212224401|ref|YP_002307637.1| - 7.8e-06 26.5 0.1 1.1e-05 26.0 0.1 1.3 1 0 0 1 1 1 1 Pre-PUA-like domain DUF1947 PF09183.10 gi|212224401|ref|YP_002307637.1| - 1.9e-05 24.8 3.8 1.9e-05 24.8 3.8 2.2 2 1 0 2 2 2 1 Domain of unknown function (DUF1947) UPF0113 PF03657.13 gi|212224401|ref|YP_002307637.1| - 0.0001 22.5 0.1 0.00027 21.1 0.0 1.7 2 0 0 2 2 2 1 UPF0113 PUA domain PUA_3 PF17785.1 gi|212224401|ref|YP_002307637.1| - 0.16 11.8 1.4 1.6 8.6 0.1 2.4 3 0 0 3 3 3 0 PUA-like domain CTP_transf_like PF01467.26 gi|212224402|ref|YP_002307638.1| - 7.1e-23 81.4 0.0 8.4e-23 81.2 0.0 1.0 1 0 0 1 1 1 1 Cytidylyltransferase-like FAD_syn PF06574.12 gi|212224402|ref|YP_002307638.1| - 2.9e-05 24.0 0.0 0.0017 18.3 0.1 2.2 2 0 0 2 2 2 2 FAD synthetase Peripla_BP_2 PF01497.18 gi|212224402|ref|YP_002307638.1| - 0.089 12.3 0.0 0.12 11.9 0.0 1.2 1 0 0 1 1 1 0 Periplasmic binding protein PGAP1 PF07819.13 gi|212224403|ref|YP_002307639.1| - 0.067 12.9 0.0 0.07 12.8 0.0 1.1 1 0 0 1 1 1 0 PGAP1-like protein AAA_31 PF13614.6 gi|212224404|ref|YP_002307640.1| - 2e-54 184.2 0.1 2.7e-54 183.7 0.1 1.2 1 0 0 1 1 1 1 AAA domain CbiA PF01656.23 gi|212224404|ref|YP_002307640.1| - 2.9e-27 95.3 0.0 3.6e-27 95.0 0.0 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain CBP_BcsQ PF06564.12 gi|212224404|ref|YP_002307640.1| - 6.9e-13 48.6 0.0 9.9e-13 48.1 0.0 1.2 1 0 0 1 1 1 1 Cellulose biosynthesis protein BcsQ ParA PF10609.9 gi|212224404|ref|YP_002307640.1| - 3.2e-12 46.4 0.7 1.6e-11 44.2 0.7 2.0 1 1 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase MipZ PF09140.11 gi|212224404|ref|YP_002307640.1| - 2.1e-11 43.6 0.2 6.6e-10 38.7 0.2 2.1 1 1 0 1 1 1 1 ATPase MipZ Fer4_NifH PF00142.18 gi|212224404|ref|YP_002307640.1| - 9e-11 41.7 0.1 7.7e-07 28.8 0.0 2.2 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family ArsA_ATPase PF02374.15 gi|212224404|ref|YP_002307640.1| - 4e-08 32.8 1.0 2.6e-07 30.1 0.9 2.4 1 1 1 2 2 2 1 Anion-transporting ATPase VirC1 PF07015.11 gi|212224404|ref|YP_002307640.1| - 1.3e-05 24.6 0.5 0.00014 21.2 0.0 2.3 2 1 0 2 2 2 1 VirC1 protein MeaB PF03308.16 gi|212224404|ref|YP_002307640.1| - 0.0017 17.4 0.1 0.0025 16.9 0.1 1.2 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB CLP1_P PF16575.5 gi|212224404|ref|YP_002307640.1| - 0.02 14.7 0.0 0.037 13.8 0.0 1.4 1 0 0 1 1 1 0 mRNA cleavage and polyadenylation factor CLP1 P-loop FTHFS PF01268.19 gi|212224404|ref|YP_002307640.1| - 0.02 13.1 0.2 0.028 12.6 0.2 1.2 1 0 0 1 1 1 0 Formate--tetrahydrofolate ligase Thymidylate_kin PF02223.17 gi|212224404|ref|YP_002307640.1| - 0.031 14.0 0.2 2.6 7.7 0.0 2.4 2 1 0 2 2 2 0 Thymidylate kinase CTP_synth_N PF06418.14 gi|212224404|ref|YP_002307640.1| - 0.1 11.9 0.1 0.16 11.2 0.1 1.2 1 0 0 1 1 1 0 CTP synthase N-terminus AAA_26 PF13500.6 gi|212224404|ref|YP_002307640.1| - 0.16 11.7 1.7 11 5.7 0.0 2.5 3 0 0 3 3 3 0 AAA domain LpxK PF02606.14 gi|212224404|ref|YP_002307640.1| - 0.33 10.0 0.8 0.57 9.2 0.8 1.4 1 0 0 1 1 1 0 Tetraacyldisaccharide-1-P 4'-kinase Tubulin PF00091.25 gi|212224405|ref|YP_002307641.1| - 2.3e-43 148.7 0.1 4.1e-43 147.9 0.1 1.4 1 0 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain FtsZ_C PF12327.8 gi|212224405|ref|YP_002307641.1| - 1.1e-23 83.4 1.3 1.1e-23 83.4 1.3 2.3 3 0 0 3 3 3 1 FtsZ family, C-terminal domain RHH_1 PF01402.21 gi|212224406|ref|YP_002307642.1| - 4e-09 36.1 0.0 6.1e-09 35.5 0.0 1.2 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family RHH_8 PF17723.1 gi|212224406|ref|YP_002307642.1| - 5.8e-06 26.5 0.0 5.9e-06 26.5 0.0 1.1 1 0 0 1 1 1 1 Ribbon-Helix-Helix transcriptional regulator family RHH_3 PF12651.7 gi|212224406|ref|YP_002307642.1| - 0.0024 17.8 0.8 0.0066 16.4 0.8 1.8 1 1 0 1 1 1 1 Ribbon-helix-helix domain ParD_antitoxin PF03693.14 gi|212224406|ref|YP_002307642.1| - 0.13 12.7 0.0 0.14 12.6 0.0 1.1 1 0 0 1 1 1 0 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH CGI-121 PF08617.10 gi|212224407|ref|YP_002307643.1| - 0.00012 22.3 0.0 0.00014 22.0 0.0 1.3 1 0 0 1 1 1 1 Kinase binding protein CGI-121 Aminotran_1_2 PF00155.21 gi|212224408|ref|YP_002307644.1| - 1.9e-76 257.6 0.0 2.2e-76 257.4 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.17 gi|212224408|ref|YP_002307644.1| - 4.6e-06 26.2 0.0 7.5e-06 25.5 0.0 1.3 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.21 gi|212224408|ref|YP_002307644.1| - 3.1e-05 23.4 0.0 4.9e-05 22.7 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase Aminotran_5 PF00266.19 gi|212224408|ref|YP_002307644.1| - 3.7e-05 22.8 0.0 7.4e-05 21.9 0.0 1.4 1 0 0 1 1 1 1 Aminotransferase class-V Alliinase_C PF04864.13 gi|212224408|ref|YP_002307644.1| - 0.0024 16.8 0.3 0.043 12.7 0.2 2.3 1 1 0 2 2 2 1 Allinase Radical_SAM PF04055.21 gi|212224408|ref|YP_002307644.1| - 0.071 13.5 0.0 0.26 11.6 0.0 1.9 2 0 0 2 2 2 0 Radical SAM superfamily Glyco_hydro_20b PF02838.15 gi|212224408|ref|YP_002307644.1| - 0.13 13.1 0.0 0.33 11.7 0.0 1.7 2 0 0 2 2 2 0 Glycosyl hydrolase family 20, domain 2 UPF0016 PF01169.19 gi|212224409|ref|YP_002307645.1| - 5.7e-23 81.0 6.0 6.5e-23 80.9 6.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein family UPF0016 SdpI PF13630.6 gi|212224409|ref|YP_002307645.1| - 0.11 12.7 0.3 0.11 12.7 0.3 2.4 2 1 0 2 2 2 0 SdpI/YhfL protein family DUF4064 PF13273.6 gi|212224409|ref|YP_002307645.1| - 0.38 11.0 11.2 1.1 9.6 11.2 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF4064) MFS_1 PF07690.16 gi|212224410|ref|YP_002307646.1| - 4.5e-20 71.9 44.0 4.5e-20 71.9 44.0 1.3 2 0 0 2 2 2 1 Major Facilitator Superfamily MrpF_PhaF PF04066.13 gi|212224411|ref|YP_002307647.1| - 0.0047 17.3 0.4 0.0047 17.3 0.4 2.6 2 1 1 3 3 3 1 Multiple resistance and pH regulation protein F (MrpF / PhaF) DUF2627 PF11118.8 gi|212224411|ref|YP_002307647.1| - 0.79 10.3 6.5 0.24 12.0 3.1 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF2627) DUF5325 PF17259.2 gi|212224411|ref|YP_002307647.1| - 2.4 8.1 7.1 0.32 10.9 2.0 1.9 2 0 0 2 2 2 0 Family of unknown function (DUF5325) QueC PF06508.13 gi|212224412|ref|YP_002307648.1| - 1.3e-63 214.3 0.0 1.5e-63 214.1 0.0 1.0 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC ATP_bind_3 PF01171.20 gi|212224412|ref|YP_002307648.1| - 2.1e-06 27.6 0.0 0.00025 20.8 0.0 2.1 2 0 0 2 2 2 2 PP-loop family Arginosuc_synth PF00764.19 gi|212224412|ref|YP_002307648.1| - 0.0001 21.7 0.0 0.00016 21.1 0.0 1.3 1 0 0 1 1 1 1 Arginosuccinate synthase ThiI PF02568.14 gi|212224412|ref|YP_002307648.1| - 0.00038 20.1 0.0 0.67 9.5 0.0 2.2 2 0 0 2 2 2 2 Thiamine biosynthesis protein (ThiI) Diphthami_syn_2 PF01902.17 gi|212224412|ref|YP_002307648.1| - 0.0016 18.0 0.0 0.0032 17.0 0.0 1.6 1 0 0 1 1 1 1 Diphthamide synthase Asn_synthase PF00733.21 gi|212224412|ref|YP_002307648.1| - 0.0054 16.4 0.0 0.0066 16.2 0.0 1.2 1 0 0 1 1 1 1 Asparagine synthase PAPS_reduct PF01507.19 gi|212224412|ref|YP_002307648.1| - 0.016 15.3 0.0 0.38 10.8 0.0 2.1 2 0 0 2 2 2 0 Phosphoadenosine phosphosulfate reductase family tRNA_Me_trans PF03054.16 gi|212224412|ref|YP_002307648.1| - 0.051 12.4 0.0 0.074 11.8 0.0 1.2 1 0 0 1 1 1 0 tRNA methyl transferase DHO_dh PF01180.21 gi|212224413|ref|YP_002307649.1| - 5.3e-64 216.3 0.0 6.1e-64 216.1 0.0 1.0 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase Dus PF01207.17 gi|212224413|ref|YP_002307649.1| - 1.8e-12 47.0 0.0 4.6e-12 45.6 0.0 1.6 1 1 0 1 1 1 1 Dihydrouridine synthase (Dus) NMO PF03060.15 gi|212224413|ref|YP_002307649.1| - 2.7e-05 23.7 4.4 9.5e-05 21.9 0.6 2.1 1 1 1 2 2 2 1 Nitronate monooxygenase His_biosynth PF00977.21 gi|212224413|ref|YP_002307649.1| - 0.008 15.7 0.0 0.022 14.2 0.0 1.7 2 0 0 2 2 2 1 Histidine biosynthesis protein DUF561 PF04481.12 gi|212224413|ref|YP_002307649.1| - 0.013 14.7 0.1 0.095 11.8 0.1 2.2 2 1 0 2 2 2 0 Protein of unknown function (DUF561) IMPDH PF00478.25 gi|212224413|ref|YP_002307649.1| - 0.061 12.3 0.1 0.12 11.4 0.1 1.4 1 0 0 1 1 1 0 IMP dehydrogenase / GMP reductase domain TMP-TENI PF02581.17 gi|212224413|ref|YP_002307649.1| - 0.08 12.3 0.0 0.2 10.9 0.0 1.6 1 0 0 1 1 1 0 Thiamine monophosphate synthase Pyr_redox_2 PF07992.14 gi|212224414|ref|YP_002307650.1| - 3.6e-39 134.7 7.2 5.3e-39 134.2 7.2 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Fer2_4 PF13510.6 gi|212224414|ref|YP_002307650.1| - 3.8e-26 90.9 0.0 8.6e-26 89.8 0.0 1.7 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Pyr_redox_3 PF13738.6 gi|212224414|ref|YP_002307650.1| - 6.5e-19 68.3 3.6 3.2e-16 59.4 3.6 2.2 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.7 gi|212224414|ref|YP_002307650.1| - 5.6e-15 55.6 10.7 2.3e-12 47.0 1.0 3.4 2 1 1 3 3 3 3 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|212224414|ref|YP_002307650.1| - 7.7e-13 48.3 14.0 1.8e-07 30.6 1.5 3.4 2 1 1 3 3 3 3 FAD binding domain HI0933_like PF03486.14 gi|212224414|ref|YP_002307650.1| - 1.5e-12 47.0 11.1 8.8e-09 34.5 1.2 3.2 3 0 0 3 3 3 3 HI0933-like protein Pyr_redox PF00070.27 gi|212224414|ref|YP_002307650.1| - 1.2e-11 45.0 8.8 7.4e-05 23.2 1.0 4.0 3 1 1 4 4 3 3 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 gi|212224414|ref|YP_002307650.1| - 7.1e-11 42.3 13.7 2.4e-05 24.1 0.2 3.9 3 1 0 3 3 3 3 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 gi|212224414|ref|YP_002307650.1| - 9.7e-10 38.5 6.8 4.1e-06 26.9 0.2 3.0 3 0 0 3 3 2 2 NAD(P)-binding Rossmann-like domain FAD_binding_3 PF01494.19 gi|212224414|ref|YP_002307650.1| - 7.4e-09 35.3 6.8 0.00072 18.9 0.2 3.3 4 0 0 4 4 4 2 FAD binding domain GIDA PF01134.22 gi|212224414|ref|YP_002307650.1| - 1.6e-08 34.0 17.2 7.8e-05 21.9 1.6 4.1 3 1 1 4 4 4 3 Glucose inhibited division protein A Thi4 PF01946.17 gi|212224414|ref|YP_002307650.1| - 2.7e-08 33.4 1.3 0.00012 21.4 0.1 2.4 2 0 0 2 2 2 2 Thi4 family NAD_binding_7 PF13241.6 gi|212224414|ref|YP_002307650.1| - 1.5e-06 28.6 3.8 0.013 16.0 0.3 2.5 2 0 0 2 2 2 2 Putative NAD(P)-binding AlaDh_PNT_C PF01262.21 gi|212224414|ref|YP_002307650.1| - 2.4e-05 23.8 11.0 3e-05 23.4 0.6 3.0 3 0 0 3 3 3 1 Alanine dehydrogenase/PNT, C-terminal domain Lycopene_cycl PF05834.12 gi|212224414|ref|YP_002307650.1| - 0.00018 20.7 9.3 0.0066 15.5 1.6 3.0 2 1 0 3 3 3 2 Lycopene cyclase protein ApbA PF02558.16 gi|212224414|ref|YP_002307650.1| - 0.0023 17.6 7.3 0.0079 15.8 0.9 3.4 3 1 1 4 4 4 1 Ketopantoate reductase PanE/ApbA Amino_oxidase PF01593.24 gi|212224414|ref|YP_002307650.1| - 0.0023 17.3 1.3 2.2 7.5 0.0 3.6 3 1 1 4 4 4 1 Flavin containing amine oxidoreductase K_oxygenase PF13434.6 gi|212224414|ref|YP_002307650.1| - 0.003 16.7 0.2 0.61 9.2 0.0 2.3 1 1 1 2 2 2 1 L-lysine 6-monooxygenase (NADPH-requiring) 3HCDH_N PF02737.18 gi|212224414|ref|YP_002307650.1| - 0.0077 16.1 4.3 1.1 9.1 0.9 2.5 2 0 0 2 2 2 2 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ELFV_dehydrog PF00208.21 gi|212224414|ref|YP_002307650.1| - 0.0081 15.9 0.2 0.11 12.2 0.1 2.3 2 0 0 2 2 2 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase NAD_binding_9 PF13454.6 gi|212224414|ref|YP_002307650.1| - 0.014 15.4 8.3 0.052 13.5 0.2 3.6 4 0 0 4 4 4 0 FAD-NAD(P)-binding Trp_halogenase PF04820.14 gi|212224414|ref|YP_002307650.1| - 0.021 13.7 0.6 0.021 13.7 0.6 2.3 2 0 0 2 2 2 0 Tryptophan halogenase UDPG_MGDP_dh_N PF03721.14 gi|212224414|ref|YP_002307650.1| - 0.044 13.3 4.9 3.2 7.3 0.1 2.7 2 1 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain TrkA_N PF02254.18 gi|212224414|ref|YP_002307650.1| - 0.068 13.4 0.8 5.7 7.2 0.2 2.9 2 0 0 2 2 2 0 TrkA-N domain F420_oxidored PF03807.17 gi|212224414|ref|YP_002307650.1| - 0.087 13.4 5.2 0.14 12.8 0.4 3.0 2 1 1 3 3 3 0 NADP oxidoreductase coenzyme F420-dependent Fer2_3 PF13085.6 gi|212224414|ref|YP_002307650.1| - 0.1 12.6 0.0 0.18 11.9 0.0 1.4 1 0 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain NAD_Gly3P_dh_N PF01210.23 gi|212224414|ref|YP_002307650.1| - 0.13 12.2 0.7 13 5.7 0.2 2.5 2 0 0 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Shikimate_DH PF01488.20 gi|212224414|ref|YP_002307650.1| - 0.15 12.1 1.9 2.1 8.4 0.3 2.6 2 0 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase ThiF PF00899.21 gi|212224414|ref|YP_002307650.1| - 0.25 10.6 2.0 0.23 10.8 0.3 1.7 2 0 0 2 2 2 0 ThiF family Fer4 PF00037.27 gi|212224415|ref|YP_002307651.1| - 1.5e-07 30.9 2.4 1.5e-07 30.9 2.4 2.7 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|212224415|ref|YP_002307651.1| - 8e-06 25.7 13.7 1.3e-05 25.0 0.9 2.3 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_7 PF12838.7 gi|212224415|ref|YP_002307651.1| - 1.2e-05 25.8 8.0 4.7e-05 23.9 8.4 1.9 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|212224415|ref|YP_002307651.1| - 2.4e-05 24.4 8.3 6.6e-05 23.0 8.4 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|212224415|ref|YP_002307651.1| - 3.2e-05 24.0 24.0 0.0007 19.7 1.6 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|212224415|ref|YP_002307651.1| - 3.5e-05 24.4 12.2 0.0037 18.1 4.1 2.5 2 1 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|212224415|ref|YP_002307651.1| - 5.6e-05 23.0 2.4 5.6e-05 23.0 2.4 2.3 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_21 PF14697.6 gi|212224415|ref|YP_002307651.1| - 9.1e-05 22.5 12.6 0.00038 20.5 12.6 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|212224415|ref|YP_002307651.1| - 0.00034 21.1 0.1 0.00034 21.1 0.1 2.5 2 1 0 2 2 2 1 4Fe-4S single cluster domain of Ferredoxin I Fer4_16 PF13484.6 gi|212224415|ref|YP_002307651.1| - 0.0012 19.7 11.2 0.077 13.9 1.1 2.3 1 1 2 3 3 3 3 4Fe-4S double cluster binding domain Fer4_15 PF13459.6 gi|212224415|ref|YP_002307651.1| - 0.0013 19.5 0.7 0.0013 19.5 0.7 2.5 2 1 0 2 2 2 1 4Fe-4S single cluster domain Fer4_8 PF13183.6 gi|212224415|ref|YP_002307651.1| - 0.0013 19.1 3.0 0.0089 16.5 0.0 2.2 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|212224415|ref|YP_002307651.1| - 0.0033 17.8 0.6 0.0033 17.8 0.6 2.3 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_17 PF13534.6 gi|212224415|ref|YP_002307651.1| - 2.3 8.8 11.6 0.48 11.0 2.0 2.5 1 1 3 4 4 4 0 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|212224415|ref|YP_002307651.1| - 7.7 6.8 11.4 1.4 9.1 2.8 2.1 1 1 0 1 1 1 0 4Fe-4S dicluster domain SO_alpha_A3 PF17806.1 gi|212224416|ref|YP_002307652.1| - 3.3e-14 53.0 0.0 3.8e-14 52.8 0.0 1.0 1 0 0 1 1 1 1 Sarcosine oxidase A3 domain Fer2_BFD PF04324.15 gi|212224416|ref|YP_002307652.1| - 1.3e-12 47.9 2.1 1.5e-12 47.6 2.1 1.1 1 0 0 1 1 1 1 BFD-like [2Fe-2S] binding domain PMP1_2 PF08114.11 gi|212224416|ref|YP_002307652.1| - 0.21 11.3 0.2 0.21 11.3 0.2 1.6 2 0 0 2 2 2 0 ATPase proteolipid family DAO PF01266.24 gi|212224417|ref|YP_002307653.1| - 1.8e-74 251.4 0.0 2.1e-74 251.3 0.0 1.0 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|212224417|ref|YP_002307653.1| - 9e-09 34.9 0.0 1.5e-08 34.2 0.0 1.3 1 0 0 1 1 1 1 FAD binding domain Pyr_redox PF00070.27 gi|212224417|ref|YP_002307653.1| - 4.5e-07 30.3 1.2 0.00016 22.1 0.1 2.5 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_2 PF07992.14 gi|212224417|ref|YP_002307653.1| - 2.8e-06 26.8 0.1 0.0002 20.7 0.1 2.2 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|212224417|ref|YP_002307653.1| - 1.4e-05 25.2 0.1 3.9e-05 23.8 0.1 1.8 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.14 gi|212224417|ref|YP_002307653.1| - 6.9e-05 21.7 0.1 0.013 14.3 0.0 2.2 2 0 0 2 2 2 2 HI0933-like protein FAD_oxidored PF12831.7 gi|212224417|ref|YP_002307653.1| - 0.00095 18.6 0.0 0.03 13.7 0.0 2.1 2 0 0 2 2 2 1 FAD dependent oxidoreductase FAD_binding_3 PF01494.19 gi|212224417|ref|YP_002307653.1| - 0.0016 17.7 0.7 0.019 14.2 0.7 2.1 1 1 0 1 1 1 1 FAD binding domain GIDA PF01134.22 gi|212224417|ref|YP_002307653.1| - 0.004 16.3 0.1 0.0062 15.7 0.1 1.3 1 0 0 1 1 1 1 Glucose inhibited division protein A Pyr_redox_3 PF13738.6 gi|212224417|ref|YP_002307653.1| - 0.019 14.2 0.3 0.034 13.4 0.3 1.4 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase UDPG_MGDP_dh_N PF03721.14 gi|212224417|ref|YP_002307653.1| - 0.022 14.3 0.1 0.038 13.5 0.1 1.3 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain ApbA PF02558.16 gi|212224417|ref|YP_002307653.1| - 0.031 13.9 0.4 0.056 13.1 0.4 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA NAD_binding_9 PF13454.6 gi|212224417|ref|YP_002307653.1| - 0.034 14.1 0.8 0.17 11.9 0.2 2.1 2 0 0 2 2 2 0 FAD-NAD(P)-binding AlaDh_PNT_C PF01262.21 gi|212224417|ref|YP_002307653.1| - 0.044 13.1 0.1 0.069 12.4 0.1 1.3 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain F420_oxidored PF03807.17 gi|212224417|ref|YP_002307653.1| - 0.057 14.0 1.5 0.18 12.4 0.2 2.4 2 0 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent 3HCDH_N PF02737.18 gi|212224417|ref|YP_002307653.1| - 0.14 12.1 0.0 0.25 11.2 0.0 1.5 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Radical_SAM PF04055.21 gi|212224418|ref|YP_002307654.1| - 3.5e-06 27.5 0.2 1.4e-05 25.5 0.0 2.2 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_14 PF13394.6 gi|212224418|ref|YP_002307654.1| - 0.02 15.1 0.0 0.038 14.1 0.0 1.4 1 0 0 1 1 1 0 4Fe-4S single cluster domain Fer4_12 PF13353.6 gi|212224418|ref|YP_002307654.1| - 0.035 14.4 0.0 0.071 13.4 0.0 1.4 1 0 0 1 1 1 0 4Fe-4S single cluster domain DUF2639 PF11121.8 gi|212224418|ref|YP_002307654.1| - 0.067 13.2 1.3 0.53 10.4 0.1 3.1 4 0 0 4 4 4 0 Protein of unknown function (DUF2639) AA_kinase PF00696.28 gi|212224419|ref|YP_002307655.1| - 1.8e-35 122.7 0.8 5.5e-35 121.1 0.8 1.6 1 1 0 1 1 1 1 Amino acid kinase family Imm40 PF15569.6 gi|212224419|ref|YP_002307655.1| - 0.15 12.2 0.0 0.48 10.6 0.0 1.8 1 0 0 1 1 1 0 Immunity protein 40 Pyr_redox_2 PF07992.14 gi|212224420|ref|YP_002307656.1| - 1.1e-68 231.7 5.2 1.5e-68 231.2 5.2 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|212224420|ref|YP_002307656.1| - 3.8e-24 85.1 5.7 5.8e-18 65.2 0.8 3.9 4 0 0 4 4 4 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.22 gi|212224420|ref|YP_002307656.1| - 2.3e-17 63.2 0.3 2.4e-16 60.0 0.0 2.4 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DAO PF01266.24 gi|212224420|ref|YP_002307656.1| - 2.1e-07 30.9 4.3 0.12 11.9 0.1 4.1 4 0 0 4 4 4 2 FAD dependent oxidoreductase Pyr_redox_3 PF13738.6 gi|212224420|ref|YP_002307656.1| - 8.2e-07 28.6 3.8 7.9e-06 25.3 2.2 2.7 1 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|212224420|ref|YP_002307656.1| - 4.7e-06 25.6 6.5 0.72 8.5 0.0 4.2 3 1 1 4 4 4 3 HI0933-like protein NAD_binding_8 PF13450.6 gi|212224420|ref|YP_002307656.1| - 1e-05 25.6 0.1 0.17 12.1 0.1 2.6 2 0 0 2 2 2 2 NAD(P)-binding Rossmann-like domain GIDA PF01134.22 gi|212224420|ref|YP_002307656.1| - 7.2e-05 22.0 0.3 0.023 13.8 0.0 2.8 3 0 0 3 3 3 1 Glucose inhibited division protein A AlaDh_PNT_C PF01262.21 gi|212224420|ref|YP_002307656.1| - 7.3e-05 22.2 0.9 0.012 14.9 0.5 2.5 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain 3HCDH_N PF02737.18 gi|212224420|ref|YP_002307656.1| - 0.00017 21.5 0.5 0.0068 16.3 0.2 2.4 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_7 PF13241.6 gi|212224420|ref|YP_002307656.1| - 0.00031 21.1 1.3 0.064 13.7 0.2 2.7 2 1 0 2 2 2 1 Putative NAD(P)-binding FAD_binding_2 PF00890.24 gi|212224420|ref|YP_002307656.1| - 0.00037 19.7 4.5 0.35 9.9 1.2 3.3 3 0 0 3 3 3 2 FAD binding domain Lycopene_cycl PF05834.12 gi|212224420|ref|YP_002307656.1| - 0.0019 17.3 3.5 0.56 9.2 0.1 3.1 2 1 1 3 3 3 1 Lycopene cyclase protein UDPG_MGDP_dh_N PF03721.14 gi|212224420|ref|YP_002307656.1| - 0.0047 16.5 0.1 0.071 12.7 0.0 2.4 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 2-Hacid_dh_C PF02826.19 gi|212224420|ref|YP_002307656.1| - 0.0059 16.0 0.2 0.027 13.9 0.0 2.0 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain K_oxygenase PF13434.6 gi|212224420|ref|YP_002307656.1| - 0.0069 15.6 0.1 0.36 9.9 0.0 2.6 3 0 0 3 3 3 1 L-lysine 6-monooxygenase (NADPH-requiring) GFO_IDH_MocA PF01408.22 gi|212224420|ref|YP_002307656.1| - 0.016 16.0 0.1 4.7 8.1 0.0 2.7 2 1 0 2 2 2 0 Oxidoreductase family, NAD-binding Rossmann fold TrkA_N PF02254.18 gi|212224420|ref|YP_002307656.1| - 0.026 14.8 0.8 5.4 7.3 0.1 2.9 3 0 0 3 3 3 0 TrkA-N domain Glu_dehyd_C PF16912.5 gi|212224420|ref|YP_002307656.1| - 0.044 13.3 0.4 0.19 11.2 0.3 2.1 1 1 0 1 1 1 0 Glucose dehydrogenase C-terminus Trp_halogenase PF04820.14 gi|212224420|ref|YP_002307656.1| - 0.05 12.4 0.0 0.05 12.4 0.0 2.6 3 0 0 3 3 3 0 Tryptophan halogenase PTS_IIB PF02302.17 gi|212224420|ref|YP_002307656.1| - 0.051 14.3 0.4 0.21 12.3 0.1 2.2 2 0 0 2 2 1 0 PTS system, Lactose/Cellobiose specific IIB subunit FAD_binding_3 PF01494.19 gi|212224420|ref|YP_002307656.1| - 0.13 11.5 2.0 2.4 7.3 1.5 2.6 2 1 1 3 3 3 0 FAD binding domain ThiF PF00899.21 gi|212224420|ref|YP_002307656.1| - 0.17 11.2 0.5 1.7 7.9 0.1 2.1 2 0 0 2 2 2 0 ThiF family Exo_endo_phos PF03372.23 gi|212224423|ref|YP_002307659.1| - 0.12 11.8 0.0 0.15 11.5 0.0 1.2 1 0 0 1 1 1 0 Endonuclease/Exonuclease/phosphatase family Tna_leader PF08053.11 gi|212224424|ref|YP_002307660.1| - 0.061 13.3 1.2 2 8.5 0.2 2.3 2 0 0 2 2 2 0 Tryptophanase operon leader peptide Peptidase_M48 PF01435.18 gi|212224425|ref|YP_002307661.1| - 3.5e-24 85.7 0.0 4.9e-24 85.2 0.0 1.2 1 0 0 1 1 1 1 Peptidase family M48 Peptidase_M56 PF05569.11 gi|212224425|ref|YP_002307661.1| - 2.5e-06 26.9 0.3 6.2e-06 25.6 0.3 1.7 1 0 0 1 1 1 1 BlaR1 peptidase M56 DUF2268 PF10026.9 gi|212224425|ref|YP_002307661.1| - 0.059 12.9 0.1 0.13 11.8 0.0 1.5 2 0 0 2 2 2 0 Predicted Zn-dependent protease (DUF2268) DUF2721 PF11026.8 gi|212224425|ref|YP_002307661.1| - 0.1 12.5 0.1 0.1 12.5 0.1 3.1 3 0 0 3 3 3 0 Protein of unknown function (DUF2721) SprT-like PF10263.9 gi|212224425|ref|YP_002307661.1| - 0.11 12.4 0.0 0.18 11.7 0.0 1.3 1 0 0 1 1 1 0 SprT-like family Mtc PF03820.17 gi|212224425|ref|YP_002307661.1| - 0.18 10.8 0.2 0.4 9.7 0.1 1.5 2 0 0 2 2 2 0 Tricarboxylate carrier IlvGEDA_leader PF08046.11 gi|212224425|ref|YP_002307661.1| - 2.5 7.6 6.4 0.42 10.1 2.1 2.0 2 0 0 2 2 2 0 IlvGEDA operon leader peptide DUF2070 PF09843.9 gi|212224425|ref|YP_002307661.1| - 2.5 6.3 15.6 0.095 11.0 6.4 2.0 2 0 0 2 2 2 0 Predicted membrane protein (DUF2070) TMEM43 PF07787.12 gi|212224425|ref|YP_002307661.1| - 7.1 5.9 6.0 14 5.0 0.1 2.4 2 0 0 2 2 2 0 Transmembrane protein 43 PTS_2-RNA PF01885.16 gi|212224427|ref|YP_002307663.1| - 3e-33 115.4 0.0 3.7e-33 115.1 0.0 1.0 1 0 0 1 1 1 1 RNA 2'-phosphotransferase, Tpt1 / KptA family PARP PF00644.20 gi|212224427|ref|YP_002307663.1| - 0.0011 18.6 0.0 0.0015 18.1 0.0 1.2 1 0 0 1 1 1 1 Poly(ADP-ribose) polymerase catalytic domain CUE PF02845.16 gi|212224427|ref|YP_002307663.1| - 0.093 12.5 0.0 0.17 11.6 0.0 1.5 1 0 0 1 1 1 0 CUE domain DUF952 PF06108.12 gi|212224427|ref|YP_002307663.1| - 0.1 12.6 0.0 0.22 11.5 0.0 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF952) DarT PF14487.6 gi|212224427|ref|YP_002307663.1| - 0.16 11.8 0.0 1.4 8.7 0.0 2.0 1 1 1 2 2 2 0 ssDNA thymidine ADP-ribosyltransferase, DarT MFS_1 PF07690.16 gi|212224428|ref|YP_002307664.1| - 5.1e-51 173.6 48.3 2.1e-29 102.6 23.0 2.2 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.7 gi|212224428|ref|YP_002307664.1| - 1.1e-24 87.0 25.6 3.4e-24 85.4 25.6 1.6 1 1 0 1 1 1 1 MFS_1 like family Sugar_tr PF00083.24 gi|212224428|ref|YP_002307664.1| - 1.1e-09 37.6 35.3 4e-08 32.6 11.0 3.5 2 1 1 3 3 3 2 Sugar (and other) transporter MFS_3 PF05977.13 gi|212224428|ref|YP_002307664.1| - 3.7e-08 32.2 21.9 4.9e-08 31.8 21.9 1.2 1 0 0 1 1 1 1 Transmembrane secretion effector OATP PF03137.20 gi|212224428|ref|YP_002307664.1| - 0.97 7.6 21.4 0.025 12.9 1.1 3.6 3 1 0 4 4 4 0 Organic Anion Transporter Polypeptide (OATP) family GHMP_kinases_N PF00288.26 gi|212224429|ref|YP_002307665.1| - 1.7e-15 56.9 0.8 3.2e-14 52.9 0.0 2.3 2 0 0 2 2 2 1 GHMP kinases N terminal domain GalKase_gal_bdg PF10509.9 gi|212224429|ref|YP_002307665.1| - 2.1e-14 52.8 0.2 4.5e-14 51.7 0.2 1.6 1 0 0 1 1 1 1 Galactokinase galactose-binding signature GHMP_kinases_C PF08544.13 gi|212224429|ref|YP_002307665.1| - 5.9e-14 52.2 0.0 1.4e-13 51.0 0.0 1.7 1 0 0 1 1 1 1 GHMP kinases C terminal DAO PF01266.24 gi|212224430|ref|YP_002307666.1| - 1.4e-73 248.5 0.0 1.6e-73 248.3 0.0 1.0 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|212224430|ref|YP_002307666.1| - 3.5e-07 29.7 0.2 1e-06 28.1 0.2 1.8 1 1 0 1 1 1 1 FAD binding domain Pyr_redox PF00070.27 gi|212224430|ref|YP_002307666.1| - 7.8e-07 29.6 0.4 1.5e-06 28.6 0.4 1.6 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|212224430|ref|YP_002307666.1| - 2.1e-06 27.9 0.1 6.1e-06 26.4 0.1 1.8 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox_2 PF07992.14 gi|212224430|ref|YP_002307666.1| - 2.5e-06 26.9 0.3 4.6e-06 26.1 0.1 1.5 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.17 gi|212224430|ref|YP_002307666.1| - 6.8e-05 22.2 0.2 0.0039 16.5 0.0 2.2 2 0 0 2 2 2 1 Thi4 family FAD_binding_3 PF01494.19 gi|212224430|ref|YP_002307666.1| - 0.00038 19.8 0.7 0.00058 19.2 0.7 1.3 1 0 0 1 1 1 1 FAD binding domain Pyr_redox_3 PF13738.6 gi|212224430|ref|YP_002307666.1| - 0.00096 18.5 1.0 0.0031 16.8 0.5 1.9 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase TrkA_N PF02254.18 gi|212224430|ref|YP_002307666.1| - 0.0011 19.2 1.1 0.0022 18.2 1.1 1.4 1 0 0 1 1 1 1 TrkA-N domain ApbA PF02558.16 gi|212224430|ref|YP_002307666.1| - 0.0015 18.2 0.1 0.0024 17.5 0.1 1.3 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA NAD_binding_7 PF13241.6 gi|212224430|ref|YP_002307666.1| - 0.0051 17.2 0.0 0.0093 16.4 0.0 1.4 1 0 0 1 1 1 1 Putative NAD(P)-binding F420_oxidored PF03807.17 gi|212224430|ref|YP_002307666.1| - 0.0083 16.7 0.1 0.018 15.6 0.1 1.7 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent HI0933_like PF03486.14 gi|212224430|ref|YP_002307666.1| - 0.0083 14.9 0.4 0.013 14.2 0.1 1.4 2 0 0 2 2 2 1 HI0933-like protein Trp_halogenase PF04820.14 gi|212224430|ref|YP_002307666.1| - 0.024 13.5 2.3 0.065 12.1 2.3 1.8 1 1 0 1 1 1 0 Tryptophan halogenase AlaDh_PNT_C PF01262.21 gi|212224430|ref|YP_002307666.1| - 0.034 13.4 0.0 0.2 11.0 0.0 1.9 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain Lycopene_cycl PF05834.12 gi|212224430|ref|YP_002307666.1| - 0.039 13.0 0.2 0.058 12.4 0.2 1.2 1 0 0 1 1 1 0 Lycopene cyclase protein UDPG_MGDP_dh_N PF03721.14 gi|212224430|ref|YP_002307666.1| - 0.072 12.7 0.1 0.12 11.9 0.1 1.3 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain DUF1188 PF06690.11 gi|212224430|ref|YP_002307666.1| - 0.072 12.6 0.0 0.16 11.5 0.0 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF1188) 3HCDH_N PF02737.18 gi|212224430|ref|YP_002307666.1| - 0.079 12.8 0.2 0.13 12.1 0.2 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Sacchrp_dh_NADP PF03435.18 gi|212224430|ref|YP_002307666.1| - 0.11 12.7 0.9 0.28 11.4 0.7 1.8 1 1 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain FAD_oxidored PF12831.7 gi|212224430|ref|YP_002307666.1| - 0.12 11.7 1.6 0.36 10.1 1.6 2.0 1 1 0 1 1 1 0 FAD dependent oxidoreductase NAD_binding_9 PF13454.6 gi|212224430|ref|YP_002307666.1| - 0.12 12.3 0.0 0.22 11.5 0.0 1.5 1 0 0 1 1 1 0 FAD-NAD(P)-binding GIDA PF01134.22 gi|212224430|ref|YP_002307666.1| - 0.2 10.7 1.8 0.74 8.8 0.1 2.1 2 0 0 2 2 2 0 Glucose inhibited division protein A Pyr_redox_2 PF07992.14 gi|212224431|ref|YP_002307667.1| - 9.4e-23 80.9 0.2 1.7e-12 47.2 0.1 2.3 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Fer2_4 PF13510.6 gi|212224431|ref|YP_002307667.1| - 8e-13 48.3 0.0 1.7e-12 47.2 0.0 1.6 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain SO_alpha_A3 PF17806.1 gi|212224431|ref|YP_002307667.1| - 1.8e-09 37.8 0.0 3.9e-09 36.7 0.0 1.5 1 0 0 1 1 1 1 Sarcosine oxidase A3 domain FAD_oxidored PF12831.7 gi|212224431|ref|YP_002307667.1| - 1.2e-07 31.4 0.0 1.7e-07 31.0 0.0 1.1 1 0 0 1 1 1 1 FAD dependent oxidoreductase Thi4 PF01946.17 gi|212224431|ref|YP_002307667.1| - 1.1e-06 28.1 0.0 2.8e-06 26.8 0.0 1.7 1 0 0 1 1 1 1 Thi4 family Pyr_redox_3 PF13738.6 gi|212224431|ref|YP_002307667.1| - 4.5e-05 22.9 0.6 0.0035 16.7 0.4 2.9 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 gi|212224431|ref|YP_002307667.1| - 0.00017 21.3 3.3 0.00048 19.8 1.4 2.2 2 1 1 3 3 3 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 gi|212224431|ref|YP_002307667.1| - 0.0016 18.7 0.1 0.0051 17.0 0.0 1.9 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain FAD_binding_3 PF01494.19 gi|212224431|ref|YP_002307667.1| - 0.0016 17.8 0.5 0.0023 17.2 0.5 1.2 1 0 0 1 1 1 1 FAD binding domain HI0933_like PF03486.14 gi|212224431|ref|YP_002307667.1| - 0.0016 17.2 0.3 0.0031 16.3 0.3 1.5 2 0 0 2 2 2 1 HI0933-like protein FAD_binding_2 PF00890.24 gi|212224431|ref|YP_002307667.1| - 0.0023 17.1 0.1 0.0048 16.0 0.1 1.6 1 0 0 1 1 1 1 FAD binding domain Lycopene_cycl PF05834.12 gi|212224431|ref|YP_002307667.1| - 0.0081 15.2 0.1 0.079 12.0 0.3 2.1 2 0 0 2 2 2 1 Lycopene cyclase protein NAD_binding_9 PF13454.6 gi|212224431|ref|YP_002307667.1| - 0.014 15.4 1.6 0.52 10.3 0.2 2.8 3 0 0 3 3 3 0 FAD-NAD(P)-binding GIDA PF01134.22 gi|212224431|ref|YP_002307667.1| - 0.11 11.6 0.6 0.22 10.6 0.6 1.5 1 0 0 1 1 1 0 Glucose inhibited division protein A TGS PF02824.21 gi|212224432|ref|YP_002307668.1| - 1.2e-23 82.9 0.0 8.3e-23 80.2 0.0 2.2 2 0 0 2 2 2 1 TGS domain MMR_HSR1 PF01926.23 gi|212224432|ref|YP_002307668.1| - 1.9e-21 76.3 0.0 4.4e-21 75.1 0.0 1.6 1 0 0 1 1 1 1 50S ribosome-binding GTPase MMR_HSR1_Xtn PF16897.5 gi|212224432|ref|YP_002307668.1| - 4.8e-20 71.6 0.0 8.6e-20 70.7 0.0 1.4 1 0 0 1 1 1 1 C-terminal region of MMR_HSR1 domain FeoB_N PF02421.18 gi|212224432|ref|YP_002307668.1| - 1.3e-11 44.3 0.0 1.5e-10 40.8 0.0 2.2 2 0 0 2 2 2 1 Ferrous iron transport protein B YchF-GTPase_C PF06071.13 gi|212224432|ref|YP_002307668.1| - 7.5e-05 22.9 0.1 0.015 15.4 0.0 2.6 1 1 1 2 2 2 1 Protein of unknown function (DUF933) MMR_HSR1_C PF08438.10 gi|212224432|ref|YP_002307668.1| - 0.00011 22.7 0.3 0.00079 20.0 0.0 2.4 3 0 0 3 3 3 1 GTPase of unknown function C-terminal SRPRB PF09439.10 gi|212224432|ref|YP_002307668.1| - 0.0035 16.8 0.2 0.027 13.9 0.0 2.1 1 1 1 2 2 2 1 Signal recognition particle receptor beta subunit RsgA_GTPase PF03193.16 gi|212224432|ref|YP_002307668.1| - 0.024 14.5 0.8 4.3 7.2 0.1 2.9 3 1 0 3 3 3 0 RsgA GTPase AAA_18 PF13238.6 gi|212224432|ref|YP_002307668.1| - 0.063 13.8 0.0 0.2 12.2 0.0 1.9 1 0 0 1 1 1 0 AAA domain Dus PF01207.17 gi|212224432|ref|YP_002307668.1| - 0.077 12.1 0.2 0.25 10.4 0.3 1.8 2 0 0 2 2 2 0 Dihydrouridine synthase (Dus) Arf PF00025.21 gi|212224432|ref|YP_002307668.1| - 0.087 12.3 0.0 1.7 8.0 0.0 2.5 2 1 0 2 2 2 0 ADP-ribosylation factor family Dynamin_N PF00350.23 gi|212224432|ref|YP_002307668.1| - 0.12 12.4 1.6 7 6.7 0.0 3.0 3 1 1 4 4 4 0 Dynamin family Myb_DNA-bind_4 PF13837.6 gi|212224432|ref|YP_002307668.1| - 0.14 12.5 2.9 4.7 7.7 0.1 2.7 1 1 1 2 2 2 0 Myb/SANT-like DNA-binding domain AsnC_trans_reg PF01037.21 gi|212224433|ref|YP_002307669.1| - 9.4e-19 67.2 0.1 1.4e-18 66.6 0.1 1.3 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain HTH_24 PF13412.6 gi|212224433|ref|YP_002307669.1| - 2.9e-17 62.0 3.0 2.9e-17 62.0 2.0 1.6 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|212224433|ref|YP_002307669.1| - 7.6e-17 60.9 0.1 1.2e-16 60.2 0.1 1.3 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain TrmB PF01978.19 gi|212224433|ref|YP_002307669.1| - 5.5e-08 32.6 0.1 1e-07 31.7 0.1 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_11 PF08279.12 gi|212224433|ref|YP_002307669.1| - 3.6e-06 26.8 0.2 7.3e-06 25.8 0.2 1.5 1 0 0 1 1 1 1 HTH domain HTH_5 PF01022.20 gi|212224433|ref|YP_002307669.1| - 2.5e-05 24.0 0.1 3.8e-05 23.5 0.1 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_Mga PF08280.11 gi|212224433|ref|YP_002307669.1| - 0.00013 21.9 0.1 0.00028 20.9 0.1 1.6 1 0 0 1 1 1 1 M protein trans-acting positive regulator (MGA) HTH domain HTH_23 PF13384.6 gi|212224433|ref|YP_002307669.1| - 0.0003 20.5 0.0 0.0006 19.5 0.0 1.5 1 0 0 1 1 1 1 Homeodomain-like domain NapD PF03927.13 gi|212224433|ref|YP_002307669.1| - 0.0003 20.8 0.5 0.0006 19.8 0.1 1.7 2 0 0 2 2 2 1 NapD protein HTH_28 PF13518.6 gi|212224433|ref|YP_002307669.1| - 0.00051 20.1 0.0 0.0011 19.0 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.10 gi|212224433|ref|YP_002307669.1| - 0.001 18.8 0.0 0.0025 17.6 0.0 1.6 2 0 0 2 2 1 1 IclR helix-turn-helix domain MarR PF01047.22 gi|212224433|ref|YP_002307669.1| - 0.0012 18.8 0.2 0.0031 17.4 0.2 1.6 2 0 0 2 2 1 1 MarR family LexA_DNA_bind PF01726.16 gi|212224433|ref|YP_002307669.1| - 0.0018 18.0 0.1 0.0032 17.2 0.1 1.4 1 0 0 1 1 1 1 LexA DNA binding domain AsnC_trans_reg2 PF17805.1 gi|212224433|ref|YP_002307669.1| - 0.0043 17.2 0.2 0.014 15.6 0.0 1.9 2 0 0 2 2 2 1 AsnC-like ligand binding domain RuvB_C PF05491.13 gi|212224433|ref|YP_002307669.1| - 0.0045 16.8 0.1 0.0087 15.9 0.1 1.5 1 0 0 1 1 1 1 RuvB C-terminal winged helix domain HTH_20 PF12840.7 gi|212224433|ref|YP_002307669.1| - 0.0056 16.7 0.0 0.01 15.9 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain RepL PF05732.11 gi|212224433|ref|YP_002307669.1| - 0.0072 15.8 0.0 0.012 15.0 0.0 1.3 1 0 0 1 1 1 1 Firmicute plasmid replication protein (RepL) HTH_Crp_2 PF13545.6 gi|212224433|ref|YP_002307669.1| - 0.0081 16.1 0.0 0.016 15.2 0.0 1.5 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain Rrf2 PF02082.20 gi|212224433|ref|YP_002307669.1| - 0.0091 16.3 0.6 0.061 13.7 0.2 2.3 3 0 0 3 3 2 1 Transcriptional regulator HTH_45 PF14947.6 gi|212224433|ref|YP_002307669.1| - 0.014 15.4 0.1 0.032 14.2 0.1 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix HTH_27 PF13463.6 gi|212224433|ref|YP_002307669.1| - 0.015 15.8 0.1 0.032 14.7 0.1 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_34 PF13601.6 gi|212224433|ref|YP_002307669.1| - 0.015 15.4 0.1 0.032 14.4 0.1 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain B-block_TFIIIC PF04182.12 gi|212224433|ref|YP_002307669.1| - 0.017 15.3 0.0 0.022 14.9 0.0 1.3 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC Fe_dep_repress PF01325.19 gi|212224433|ref|YP_002307669.1| - 0.017 15.3 0.1 0.044 14.0 0.1 1.7 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain DDRGK PF09756.9 gi|212224433|ref|YP_002307669.1| - 0.034 13.7 0.7 0.053 13.1 0.7 1.3 1 0 0 1 1 1 0 DDRGK domain PadR PF03551.14 gi|212224433|ref|YP_002307669.1| - 0.038 14.0 0.0 0.088 12.8 0.0 1.7 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family HTH_40 PF14493.6 gi|212224433|ref|YP_002307669.1| - 0.055 13.9 0.2 0.092 13.2 0.2 1.7 1 1 0 1 1 1 0 Helix-turn-helix domain FUR PF01475.19 gi|212224433|ref|YP_002307669.1| - 0.06 13.5 0.1 0.22 11.7 0.0 1.9 2 0 0 2 2 2 0 Ferric uptake regulator family Mga PF05043.13 gi|212224433|ref|YP_002307669.1| - 0.061 13.9 0.7 0.25 12.0 0.3 2.0 1 1 1 2 2 2 0 Mga helix-turn-helix domain HTH_10 PF04967.12 gi|212224433|ref|YP_002307669.1| - 0.069 13.0 0.1 0.13 12.1 0.1 1.4 1 0 0 1 1 1 0 HTH DNA binding domain HTH_9 PF08221.11 gi|212224433|ref|YP_002307669.1| - 0.1 12.7 0.0 0.24 11.5 0.0 1.6 1 0 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain MarR_2 PF12802.7 gi|212224433|ref|YP_002307669.1| - 0.1 12.5 0.0 0.26 11.2 0.0 1.7 1 0 0 1 1 1 0 MarR family HTH_36 PF13730.6 gi|212224433|ref|YP_002307669.1| - 0.11 12.4 0.1 0.19 11.7 0.1 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain DJ-1_PfpI PF01965.24 gi|212224434|ref|YP_002307670.1| - 5.5e-58 195.4 0.0 6.1e-58 195.3 0.0 1.0 1 0 0 1 1 1 1 DJ-1/PfpI family ThiJ_like PF17124.5 gi|212224434|ref|YP_002307670.1| - 0.0009 19.0 0.0 0.088 12.5 0.0 2.5 1 1 1 2 2 2 1 ThiJ/PfpI family-like GATase PF00117.28 gi|212224434|ref|YP_002307670.1| - 0.0011 18.8 0.0 0.0013 18.6 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Catalase_C PF18011.1 gi|212224434|ref|YP_002307670.1| - 0.024 14.3 0.0 0.036 13.7 0.0 1.3 1 0 0 1 1 1 0 C-terminal domain found in long catalases SNO PF01174.19 gi|212224434|ref|YP_002307670.1| - 0.037 13.9 0.0 0.047 13.5 0.0 1.2 1 0 0 1 1 1 0 SNO glutamine amidotransferase family GATase_3 PF07685.14 gi|212224434|ref|YP_002307670.1| - 0.069 12.7 0.0 0.086 12.4 0.0 1.2 1 0 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain DUF4097 PF13349.6 gi|212224435|ref|YP_002307671.1| - 0.00017 21.0 0.0 0.00021 20.7 0.0 1.3 1 1 0 1 1 1 1 Putative adhesin DUF2154 PF09922.9 gi|212224435|ref|YP_002307671.1| - 0.0015 18.4 2.5 0.0015 18.4 2.5 3.3 2 1 2 4 4 4 1 Cell wall-active antibiotics response 4TMS YvqF Fusion_gly PF00523.18 gi|212224435|ref|YP_002307671.1| - 0.17 10.1 1.6 0.25 9.5 1.6 1.3 1 0 0 1 1 1 0 Fusion glycoprotein F0 SprB PF13573.6 gi|212224435|ref|YP_002307671.1| - 3.2 7.6 7.7 10 6.0 0.3 2.7 2 0 0 2 2 2 0 SprB repeat PspC PF04024.12 gi|212224436|ref|YP_002307672.1| - 7.9e-18 64.0 0.2 1.7e-17 62.9 0.2 1.6 1 0 0 1 1 1 1 PspC domain Limkain-b1 PF11608.8 gi|212224436|ref|YP_002307672.1| - 0.12 12.5 0.0 0.18 11.9 0.0 1.2 1 0 0 1 1 1 0 Limkain b1 DUF872 PF05915.12 gi|212224436|ref|YP_002307672.1| - 0.17 12.1 1.4 0.19 11.9 0.2 1.7 2 0 0 2 2 2 0 Eukaryotic protein of unknown function (DUF872) DUF202 PF02656.15 gi|212224436|ref|YP_002307672.1| - 7.3 7.1 6.2 58 4.2 6.1 2.3 1 1 0 1 1 1 0 Domain of unknown function (DUF202) TMCCDC2 PF15844.5 gi|212224437|ref|YP_002307673.1| - 0.092 12.7 1.8 0.1 12.5 1.8 1.1 1 0 0 1 1 1 0 Transmembrane and coiled-coil domain-containing protein 2 UPF0697 PF15117.6 gi|212224437|ref|YP_002307673.1| - 0.16 12.1 0.1 0.23 11.5 0.1 1.4 1 0 0 1 1 1 0 Uncharacterised protein family UPF0697 CitG PF01874.16 gi|212224438|ref|YP_002307674.1| - 2.5e-47 161.8 0.0 3e-47 161.6 0.0 1.0 1 0 0 1 1 1 1 ATP:dephospho-CoA triphosphoribosyl transferase DUF1884 PF08967.10 gi|212224439|ref|YP_002307675.1| - 2.3e-35 120.7 1.1 2.5e-35 120.6 1.1 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF1884) MarC PF01914.17 gi|212224440|ref|YP_002307676.1| - 2.5e-59 200.1 12.9 2.9e-59 199.9 12.9 1.0 1 0 0 1 1 1 1 MarC family integral membrane protein DUF4293 PF14126.6 gi|212224440|ref|YP_002307676.1| - 0.34 11.1 7.3 0.92 9.7 7.3 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF4293) OsmC PF02566.19 gi|212224441|ref|YP_002307677.1| - 5.1e-16 59.0 0.0 6.3e-16 58.7 0.0 1.1 1 0 0 1 1 1 1 OsmC-like protein Radical_SAM PF04055.21 gi|212224442|ref|YP_002307678.1| - 5.3e-14 52.9 0.8 6.9e-14 52.6 0.2 1.5 2 0 0 2 2 2 1 Radical SAM superfamily DUF1848 PF08902.11 gi|212224442|ref|YP_002307678.1| - 3.2e-06 27.1 7.3 0.0051 16.6 0.0 2.4 2 1 0 2 2 2 2 Domain of unknown function (DUF1848) Fer4_12 PF13353.6 gi|212224442|ref|YP_002307678.1| - 0.11 12.7 0.2 0.41 10.9 0.1 2.0 2 1 0 2 2 2 0 4Fe-4S single cluster domain Methyltransf_18 PF12847.7 gi|212224442|ref|YP_002307678.1| - 0.14 12.1 0.0 0.31 11.0 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain Peptidase_C26 PF07722.13 gi|212224443|ref|YP_002307679.1| - 4.2e-54 183.6 0.1 5.3e-54 183.2 0.1 1.1 1 0 0 1 1 1 1 Peptidase C26 GATase PF00117.28 gi|212224443|ref|YP_002307679.1| - 7.8e-10 38.8 0.1 2.5e-09 37.2 0.1 1.7 1 1 0 1 1 1 1 Glutamine amidotransferase class-I Aminotran_1_2 PF00155.21 gi|212224445|ref|YP_002307681.1| - 5.7e-39 134.3 0.0 6.5e-39 134.1 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_MocR PF12897.7 gi|212224445|ref|YP_002307681.1| - 3.6e-14 52.4 0.0 5.3e-14 51.8 0.0 1.1 1 0 0 1 1 1 1 Alanine-glyoxylate amino-transferase Beta_elim_lyase PF01212.21 gi|212224445|ref|YP_002307681.1| - 0.013 14.8 0.0 0.02 14.2 0.0 1.3 1 0 0 1 1 1 0 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.17 gi|212224445|ref|YP_002307681.1| - 0.16 11.2 0.0 0.29 10.4 0.0 1.3 1 0 0 1 1 1 0 DegT/DnrJ/EryC1/StrS aminotransferase family IF-2B PF01008.17 gi|212224446|ref|YP_002307682.1| - 6.7e-92 307.7 0.4 7.8e-92 307.5 0.4 1.0 1 0 0 1 1 1 1 Initiation factor 2 subunit family BtrH_N PF14399.6 gi|212224446|ref|YP_002307682.1| - 0.01 16.1 0.2 0.71 10.1 0.0 2.3 2 0 0 2 2 2 1 Butirosin biosynthesis protein H, N-terminal ADH_zinc_N PF00107.26 gi|212224446|ref|YP_002307682.1| - 0.092 12.7 0.5 0.26 11.3 0.0 2.0 2 0 0 2 2 2 0 Zinc-binding dehydrogenase SnoaL_3 PF13474.6 gi|212224448|ref|YP_002307684.1| - 0.13 12.5 0.0 0.26 11.6 0.0 1.4 1 0 0 1 1 1 0 SnoaL-like domain Nop PF01798.18 gi|212224449|ref|YP_002307685.1| - 7.6e-74 248.0 0.0 1e-73 247.6 0.0 1.2 1 0 0 1 1 1 1 snoRNA binding domain, fibrillarin IMD PF08397.11 gi|212224449|ref|YP_002307685.1| - 4 6.8 10.2 12 5.2 10.2 1.7 1 0 0 1 1 1 0 IRSp53/MIM homology domain Fibrillarin PF01269.17 gi|212224450|ref|YP_002307686.1| - 5.5e-101 336.4 0.0 6.4e-101 336.2 0.0 1.0 1 0 0 1 1 1 1 Fibrillarin PCMT PF01135.19 gi|212224450|ref|YP_002307686.1| - 5.4e-07 29.6 0.0 7.3e-07 29.1 0.0 1.1 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) GCD14 PF08704.10 gi|212224450|ref|YP_002307686.1| - 0.00035 20.3 0.0 0.00051 19.8 0.0 1.2 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit FtsJ PF01728.19 gi|212224450|ref|YP_002307686.1| - 0.047 13.8 0.0 0.062 13.4 0.0 1.3 1 1 0 1 1 1 0 FtsJ-like methyltransferase ACP_syn_III_C PF08541.10 gi|212224451|ref|YP_002307687.1| - 3.7e-11 43.0 0.0 9.9e-11 41.7 0.0 1.7 1 0 0 1 1 1 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ACP_syn_III PF08545.10 gi|212224451|ref|YP_002307687.1| - 1.2e-05 25.1 3.4 3.3e-05 23.6 0.8 2.3 2 0 0 2 2 2 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III HMG_CoA_synt_C PF08540.10 gi|212224451|ref|YP_002307687.1| - 2.9e-05 23.9 0.1 0.035 13.7 0.0 2.2 1 1 1 2 2 2 2 Hydroxymethylglutaryl-coenzyme A synthase C terminal HMG_CoA_synt_N PF01154.17 gi|212224451|ref|YP_002307687.1| - 0.00039 20.3 0.1 0.0012 18.7 0.1 1.8 1 1 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A synthase N terminal Thiolase_N PF00108.23 gi|212224451|ref|YP_002307687.1| - 0.00053 19.4 0.0 0.0008 18.8 0.0 1.2 1 0 0 1 1 1 1 Thiolase, N-terminal domain PTCRA PF15028.6 gi|212224451|ref|YP_002307687.1| - 0.12 12.1 0.1 0.25 11.0 0.1 1.5 1 0 0 1 1 1 0 Pre-T-cell antigen receptor Thiolase_N PF00108.23 gi|212224452|ref|YP_002307688.1| - 8.3e-27 94.2 0.0 1.7e-26 93.2 0.0 1.5 1 0 0 1 1 1 1 Thiolase, N-terminal domain Thiolase_C PF02803.18 gi|212224452|ref|YP_002307688.1| - 6e-11 42.1 0.6 2.8e-10 39.9 0.2 2.5 3 0 0 3 3 3 1 Thiolase, C-terminal domain ketoacyl-synt PF00109.26 gi|212224452|ref|YP_002307688.1| - 1.6e-06 27.9 5.9 8.8e-06 25.5 1.3 2.9 2 1 1 3 3 3 1 Beta-ketoacyl synthase, N-terminal domain Ketoacyl-synt_C PF02801.22 gi|212224452|ref|YP_002307688.1| - 3.9e-05 23.6 1.4 0.0032 17.5 0.1 3.4 2 2 0 2 2 2 1 Beta-ketoacyl synthase, C-terminal domain ACP_syn_III PF08545.10 gi|212224452|ref|YP_002307688.1| - 0.029 14.2 0.6 0.75 9.7 0.2 2.4 2 0 0 2 2 2 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III OB_aCoA_assoc PF01796.17 gi|212224453|ref|YP_002307689.1| - 3.5e-22 78.2 0.0 4.6e-22 77.8 0.0 1.2 1 0 0 1 1 1 1 DUF35 OB-fold domain, acyl-CoA-associated DUF35_N PF12172.8 gi|212224453|ref|YP_002307689.1| - 3.4e-10 39.6 0.2 4.9e-10 39.1 0.2 1.3 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) TackOD1 PF18551.1 gi|212224453|ref|YP_002307689.1| - 0.17 11.5 0.1 0.25 11.0 0.1 1.2 1 0 0 1 1 1 0 Thaumarchaeal output domain 1 DUF3887 PF13026.6 gi|212224454|ref|YP_002307690.1| - 0.062 14.1 0.1 0.068 14.0 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3887) Acetyltransf_1 PF00583.25 gi|212224455|ref|YP_002307691.1| - 5.8e-20 71.7 0.9 7.2e-20 71.4 0.9 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|212224455|ref|YP_002307691.1| - 1e-15 57.8 0.1 1.4e-15 57.4 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|212224455|ref|YP_002307691.1| - 1.3e-13 51.1 0.4 2.1e-13 50.5 0.4 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|212224455|ref|YP_002307691.1| - 7.2e-08 32.3 0.0 1.1e-07 31.7 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_CG PF14542.6 gi|212224455|ref|YP_002307691.1| - 3.9e-05 23.7 0.0 7.2e-05 22.8 0.0 1.5 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_4 PF13420.7 gi|212224455|ref|YP_002307691.1| - 5e-05 23.5 0.1 6.1e-05 23.2 0.1 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.6 gi|212224455|ref|YP_002307691.1| - 0.00024 20.8 0.0 0.00034 20.3 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|212224455|ref|YP_002307691.1| - 0.00049 20.8 0.2 0.00061 20.5 0.2 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_15 PF17013.5 gi|212224455|ref|YP_002307691.1| - 0.0011 18.5 0.0 0.0014 18.2 0.0 1.3 1 0 0 1 1 1 1 Putative acetyl-transferase PanZ PF12568.8 gi|212224455|ref|YP_002307691.1| - 0.019 14.7 0.4 0.051 13.3 0.4 1.7 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain, PanZ Acetyltransf_18 PF18014.1 gi|212224455|ref|YP_002307691.1| - 0.021 14.7 0.0 0.08 12.8 0.0 1.8 2 0 0 2 2 2 0 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|212224455|ref|YP_002307691.1| - 0.04 14.0 0.1 0.047 13.8 0.1 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain FliG_N PF14842.6 gi|212224455|ref|YP_002307691.1| - 0.19 12.3 0.0 0.32 11.5 0.0 1.3 1 0 0 1 1 1 0 FliG N-terminal domain HTH_3 PF01381.22 gi|212224456|ref|YP_002307692.1| - 1.6e-06 28.0 0.1 3.4e-06 27.0 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.7 gi|212224456|ref|YP_002307692.1| - 0.0045 17.0 1.0 0.0098 15.9 0.8 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain DZR PF12773.7 gi|212224456|ref|YP_002307692.1| - 0.013 15.5 0.2 0.022 14.8 0.2 1.3 1 0 0 1 1 1 0 Double zinc ribbon Bot1p PF12298.8 gi|212224456|ref|YP_002307692.1| - 0.024 14.8 0.1 0.032 14.4 0.1 1.3 1 0 0 1 1 1 0 Eukaryotic mitochondrial regulator protein DUF356 PF04009.12 gi|212224457|ref|YP_002307693.1| - 7.1e-35 119.5 0.0 9.6e-35 119.1 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF356) DUF505 PF04458.12 gi|212224458|ref|YP_002307694.1| - 2e-22 79.3 0.1 2.4e-22 79.1 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF505) DUF505 PF04458.12 gi|212224459|ref|YP_002307695.1| - 2.1e-19 69.4 4.1 1.6e-11 43.4 0.9 2.0 1 1 1 2 2 2 2 Protein of unknown function (DUF505) Rio2_N PF09202.11 gi|212224459|ref|YP_002307695.1| - 0.016 15.4 0.1 0.023 14.9 0.1 1.2 1 0 0 1 1 1 0 Rio2, N-terminal TBP PF00352.21 gi|212224460|ref|YP_002307696.1| - 7.2e-59 195.7 0.0 1.1e-28 98.9 0.0 2.0 2 0 0 2 2 2 2 Transcription factor TFIID (or TATA-binding protein, TBP) DUF3378 PF11858.8 gi|212224460|ref|YP_002307696.1| - 4.8e-08 33.0 0.0 0.00026 21.0 0.0 2.4 2 1 0 2 2 2 2 Domain of unknown function (DUF3378) AIRS_C PF02769.22 gi|212224460|ref|YP_002307696.1| - 0.029 14.5 0.0 0.57 10.3 0.0 2.1 2 0 0 2 2 2 0 AIR synthase related protein, C-terminal domain DDE_Tnp_1_assoc PF13808.6 gi|212224460|ref|YP_002307696.1| - 0.07 13.2 0.0 0.44 10.6 0.0 2.0 2 0 0 2 2 2 0 DDE_Tnp_1-associated HemN_C PF06969.16 gi|212224460|ref|YP_002307696.1| - 0.087 12.9 0.1 0.24 11.5 0.1 1.7 1 0 0 1 1 1 0 HemN C-terminal domain DUF5321 PF17254.2 gi|212224460|ref|YP_002307696.1| - 0.16 11.4 0.8 0.36 10.2 0.0 1.8 2 0 0 2 2 2 0 Family of unknown function (DUF5321) DUF2250 PF10007.9 gi|212224460|ref|YP_002307696.1| - 0.19 11.8 0.2 0.48 10.6 0.1 1.7 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) Hist_deacetyl PF00850.19 gi|212224461|ref|YP_002307697.1| - 5.7e-67 226.4 0.0 1e-66 225.5 0.0 1.3 1 1 0 1 1 1 1 Histone deacetylase domain POR PF01558.18 gi|212224462|ref|YP_002307698.1| - 2e-39 135.5 0.2 2.4e-39 135.2 0.2 1.0 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase TPP_enzyme_C PF02775.21 gi|212224463|ref|YP_002307699.1| - 1.8e-30 105.8 0.6 5e-30 104.3 0.6 1.8 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain POR_N PF01855.19 gi|212224463|ref|YP_002307699.1| - 1e-15 58.1 0.2 1.7e-15 57.4 0.2 1.3 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Fer4 PF00037.27 gi|212224463|ref|YP_002307699.1| - 8.9e-09 34.8 18.3 9.7e-07 28.4 2.4 3.0 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|212224463|ref|YP_002307699.1| - 1.5e-07 31.9 10.2 3.2e-06 27.6 9.9 2.7 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|212224463|ref|YP_002307699.1| - 2.9e-06 27.3 8.8 2.9e-06 27.3 8.8 1.8 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|212224463|ref|YP_002307699.1| - 4.9e-06 26.6 10.6 8.6e-06 25.8 9.5 2.0 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|212224463|ref|YP_002307699.1| - 2.3e-05 24.2 18.9 0.00011 22.1 1.7 3.1 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|212224463|ref|YP_002307699.1| - 0.00025 21.1 9.9 0.0028 17.8 10.2 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|212224463|ref|YP_002307699.1| - 0.00071 19.5 16.9 0.019 15.0 1.9 3.0 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|212224463|ref|YP_002307699.1| - 0.0025 18.7 6.3 0.073 14.0 0.5 3.3 3 0 0 3 3 3 1 4Fe-4S double cluster binding domain Fer4_13 PF13370.6 gi|212224463|ref|YP_002307699.1| - 0.013 16.1 10.3 1.1 9.8 2.0 3.7 2 1 1 3 3 3 0 4Fe-4S single cluster domain of Ferredoxin I DXP_synthase_N PF13292.6 gi|212224463|ref|YP_002307699.1| - 0.017 14.3 1.1 0.078 12.2 0.8 2.0 2 0 0 2 2 2 0 1-deoxy-D-xylulose-5-phosphate synthase Fer4_17 PF13534.6 gi|212224463|ref|YP_002307699.1| - 2.3 8.8 11.0 2.3 8.8 1.7 2.9 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|212224463|ref|YP_002307699.1| - 4.8 8.0 8.8 8 7.3 0.7 3.2 2 1 1 3 3 3 0 4Fe-4S single cluster domain Fer4_4 PF12800.7 gi|212224463|ref|YP_002307699.1| - 6.9 7.4 18.9 0.65 10.6 1.4 2.8 3 0 0 3 3 2 0 4Fe-4S binding domain Fer4_22 PF17179.4 gi|212224463|ref|YP_002307699.1| - 9.7 7.1 11.3 2.1 9.3 2.3 2.7 1 1 1 2 2 2 0 4Fe-4S dicluster domain Succ_CoA_lig PF13607.6 gi|212224464|ref|YP_002307700.1| - 2.9e-59 198.8 0.8 9e-59 197.2 0.5 2.0 2 0 0 2 2 2 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.6 gi|212224464|ref|YP_002307700.1| - 2.4e-26 92.5 0.3 7.2e-25 87.7 0.2 2.3 2 0 0 2 2 2 1 CoA binding domain CoA_binding PF02629.19 gi|212224464|ref|YP_002307700.1| - 5.7e-16 59.0 1.0 1.7e-15 57.4 1.0 1.9 1 0 0 1 1 1 1 CoA binding domain Lactamase_B_3 PF13483.6 gi|212224465|ref|YP_002307701.1| - 6.1e-32 110.8 0.0 7.7e-32 110.4 0.0 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.7 gi|212224465|ref|YP_002307701.1| - 5.2e-25 88.1 0.0 6.5e-25 87.8 0.0 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|212224465|ref|YP_002307701.1| - 1.6e-12 47.9 2.9 1e-11 45.2 1.4 2.3 2 1 0 2 2 2 1 Metallo-beta-lactamase superfamily Lactamase_B_5 PF14597.6 gi|212224465|ref|YP_002307701.1| - 0.08 12.4 0.0 0.1 12.1 0.0 1.2 1 0 0 1 1 1 0 Metallo-beta-lactamase superfamily CW_binding_2 PF04122.12 gi|212224466|ref|YP_002307702.1| - 4.4e-13 49.7 0.7 1.5e-07 31.9 0.4 2.3 2 0 0 2 2 2 2 Putative cell wall binding repeat 2 MarR_2 PF12802.7 gi|212224466|ref|YP_002307702.1| - 9e-06 25.5 0.1 1.8e-05 24.5 0.1 1.4 1 0 0 1 1 1 1 MarR family MarR PF01047.22 gi|212224466|ref|YP_002307702.1| - 1.2e-05 25.2 0.2 2e-05 24.4 0.2 1.4 1 0 0 1 1 1 1 MarR family HTH_Crp_2 PF13545.6 gi|212224466|ref|YP_002307702.1| - 2.1e-05 24.4 0.1 4.7e-05 23.3 0.1 1.6 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain Penicillinase_R PF03965.16 gi|212224466|ref|YP_002307702.1| - 0.00017 21.9 0.4 0.00034 20.9 0.4 1.5 1 0 0 1 1 1 1 Penicillinase repressor HTH_24 PF13412.6 gi|212224466|ref|YP_002307702.1| - 0.00028 20.4 0.4 0.00053 19.5 0.4 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_27 PF13463.6 gi|212224466|ref|YP_002307702.1| - 0.00029 21.3 0.2 0.00097 19.6 0.2 1.9 2 0 0 2 2 2 1 Winged helix DNA-binding domain TrmB PF01978.19 gi|212224466|ref|YP_002307702.1| - 0.00033 20.5 0.4 0.00079 19.3 0.4 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_36 PF13730.6 gi|212224466|ref|YP_002307702.1| - 0.0037 17.2 0.0 0.0088 16.0 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain GntR PF00392.21 gi|212224466|ref|YP_002307702.1| - 0.0063 16.1 0.3 0.011 15.3 0.3 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_IclR PF09339.10 gi|212224466|ref|YP_002307702.1| - 0.0075 16.1 0.0 0.015 15.1 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_DeoR PF08220.12 gi|212224466|ref|YP_002307702.1| - 0.029 14.1 0.0 0.062 13.1 0.0 1.5 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain PALP PF00291.25 gi|212224466|ref|YP_002307702.1| - 0.032 13.6 0.2 0.23 10.8 0.2 2.2 1 1 1 2 2 2 0 Pyridoxal-phosphate dependent enzyme Peripla_BP_2 PF01497.18 gi|212224466|ref|YP_002307702.1| - 0.033 13.7 0.1 0.23 11.0 0.0 2.0 2 0 0 2 2 2 0 Periplasmic binding protein Fe_dep_repress PF01325.19 gi|212224466|ref|YP_002307702.1| - 0.034 14.3 0.1 0.068 13.4 0.1 1.4 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain DUF1670 PF07900.11 gi|212224466|ref|YP_002307702.1| - 0.069 12.5 0.1 0.14 11.5 0.0 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF1670) DUF1323 PF07037.11 gi|212224466|ref|YP_002307702.1| - 0.083 13.3 0.0 0.39 11.1 0.0 2.1 2 1 1 3 3 2 0 Putative transcription regulator (DUF1323) Peptidase_U4 PF03419.13 gi|212224466|ref|YP_002307702.1| - 0.099 11.9 0.1 0.17 11.2 0.1 1.3 1 0 0 1 1 1 0 Sporulation factor SpoIIGA HTH_31 PF13560.6 gi|212224466|ref|YP_002307702.1| - 0.16 12.3 0.0 0.39 11.1 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain zf-C2H2 PF00096.26 gi|212224467|ref|YP_002307703.1| - 1.3e-06 28.5 1.0 2.3e-06 27.7 1.0 1.4 1 0 0 1 1 1 1 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 gi|212224467|ref|YP_002307703.1| - 0.0002 21.9 0.6 0.00033 21.2 0.6 1.4 1 0 0 1 1 1 1 C2H2-type zinc finger zf-CSL PF05207.13 gi|212224467|ref|YP_002307703.1| - 0.0028 17.3 0.0 0.0029 17.3 0.0 1.0 1 0 0 1 1 1 1 CSL zinc finger DUF629 PF04780.12 gi|212224467|ref|YP_002307703.1| - 0.0091 14.6 0.0 0.0091 14.6 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF629) GAGA PF09237.11 gi|212224467|ref|YP_002307703.1| - 0.021 14.7 0.0 0.022 14.6 0.0 1.2 1 0 0 1 1 1 0 GAGA factor Zn_Tnp_IS1595 PF12760.7 gi|212224467|ref|YP_002307703.1| - 0.029 14.4 0.0 0.029 14.4 0.0 1.2 1 0 0 1 1 1 0 Transposase zinc-ribbon domain zf-Mss51 PF13824.6 gi|212224467|ref|YP_002307703.1| - 0.033 14.3 0.0 0.035 14.2 0.0 1.2 1 0 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 zf-FPG_IleRS PF06827.14 gi|212224467|ref|YP_002307703.1| - 0.049 13.5 0.6 0.064 13.1 0.6 1.4 1 1 0 1 1 1 0 Zinc finger found in FPG and IleRS FOXP-CC PF16159.5 gi|212224467|ref|YP_002307703.1| - 0.052 14.2 0.1 0.068 13.8 0.1 1.1 1 0 0 1 1 1 0 FOXP coiled-coil domain zf-Di19 PF05605.12 gi|212224467|ref|YP_002307703.1| - 0.079 13.3 0.2 0.1 12.9 0.2 1.1 1 0 0 1 1 1 0 Drought induced 19 protein (Di19), zinc-binding zf-CpG_bind_C PF12269.8 gi|212224467|ref|YP_002307703.1| - 0.085 12.6 0.0 0.085 12.6 0.0 1.0 1 0 0 1 1 1 0 CpG binding protein zinc finger C terminal domain zf-C2H2_jaz PF12171.8 gi|212224467|ref|YP_002307703.1| - 0.093 13.0 0.3 0.13 12.6 0.3 1.3 1 0 0 1 1 1 0 Zinc-finger double-stranded RNA-binding HTH_17 PF12728.7 gi|212224468|ref|YP_002307704.1| - 0.033 14.4 0.2 12 6.1 0.0 2.6 2 0 0 2 2 2 0 Helix-turn-helix domain NTP_transf_9 PF04248.12 gi|212224468|ref|YP_002307704.1| - 0.14 12.0 0.0 2.2 8.2 0.0 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF427) CLZ PF16526.5 gi|212224468|ref|YP_002307704.1| - 0.16 12.3 3.5 8.9 6.7 0.0 3.1 3 1 0 3 3 3 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels DUF4199 PF13858.6 gi|212224469|ref|YP_002307705.1| - 0.0081 16.6 0.4 0.014 15.8 0.4 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF4199) DUF1192 PF06698.11 gi|212224469|ref|YP_002307705.1| - 0.033 14.2 2.6 0.033 14.2 2.6 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF1192) DUF1129 PF06570.11 gi|212224469|ref|YP_002307705.1| - 0.074 12.5 0.6 0.12 11.9 0.6 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1129) ParE_toxin PF05016.15 gi|212224469|ref|YP_002307705.1| - 0.09 13.4 1.6 0.3 11.7 0.2 2.4 2 1 1 3 3 3 0 ParE toxin of type II toxin-antitoxin system, parDE Prefoldin_2 PF01920.20 gi|212224469|ref|YP_002307705.1| - 0.091 12.7 1.8 0.18 11.8 1.8 1.5 1 0 0 1 1 1 0 Prefoldin subunit ABC_tran_CTD PF16326.5 gi|212224469|ref|YP_002307705.1| - 0.11 12.8 2.8 0.41 10.9 2.8 1.9 1 0 0 1 1 1 0 ABC transporter C-terminal domain DUF2207 PF09972.9 gi|212224469|ref|YP_002307705.1| - 0.21 10.3 0.0 0.24 10.1 0.0 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) DivIC PF04977.15 gi|212224469|ref|YP_002307705.1| - 2.1 8.2 6.0 0.43 10.4 1.8 2.0 2 0 0 2 2 2 0 Septum formation initiator Creatininase PF02633.14 gi|212224470|ref|YP_002307706.1| - 3.1e-64 216.7 0.0 3.5e-64 216.5 0.0 1.0 1 0 0 1 1 1 1 Creatinine amidohydrolase Glycos_transf_1 PF00534.20 gi|212224471|ref|YP_002307707.1| - 3.4e-45 153.7 0.0 9.5e-45 152.2 0.0 1.7 1 1 1 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|212224471|ref|YP_002307707.1| - 1.1e-36 126.2 0.0 2.3e-36 125.2 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|212224471|ref|YP_002307707.1| - 1.7e-27 96.5 0.2 1.5e-26 93.4 0.2 2.3 3 0 0 3 3 3 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.6 gi|212224471|ref|YP_002307707.1| - 1.7e-13 50.8 0.0 2.5e-12 47.0 0.0 2.3 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.6 gi|212224471|ref|YP_002307707.1| - 6.9e-12 46.1 0.0 2.1e-11 44.5 0.0 1.7 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_transf_5 PF08323.11 gi|212224471|ref|YP_002307707.1| - 4.4e-07 29.9 0.2 0.00049 19.9 0.1 2.2 1 1 1 2 2 2 2 Starch synthase catalytic domain Glyco_trans_4_2 PF13477.6 gi|212224471|ref|YP_002307707.1| - 2.2e-05 24.5 0.0 4.5e-05 23.5 0.0 1.6 1 1 0 1 1 1 1 Glycosyl transferase 4-like PIGA PF08288.12 gi|212224471|ref|YP_002307707.1| - 3.5e-05 24.3 0.3 8.7e-05 23.0 0.3 1.6 1 0 0 1 1 1 1 PIGA (GPI anchor biosynthesis) Gag_p10 PF02337.17 gi|212224471|ref|YP_002307707.1| - 0.19 11.7 0.0 0.42 10.6 0.0 1.5 1 0 0 1 1 1 0 Retroviral GAG p10 protein UbiA PF01040.18 gi|212224472|ref|YP_002307708.1| - 2.2e-33 115.7 11.9 2.7e-33 115.3 11.9 1.1 1 0 0 1 1 1 1 UbiA prenyltransferase family Spermine_synth PF01564.17 gi|212224473|ref|YP_002307709.1| - 5.2e-54 182.5 0.0 6.7e-54 182.2 0.0 1.1 1 0 0 1 1 1 1 Spermine/spermidine synthase domain Spermine_synt_N PF17284.2 gi|212224473|ref|YP_002307709.1| - 5.6e-13 48.6 0.0 1.1e-12 47.7 0.0 1.5 1 0 0 1 1 1 1 Spermidine synthase tetramerisation domain Methyltransf_25 PF13649.6 gi|212224473|ref|YP_002307709.1| - 0.00021 22.0 0.0 0.0004 21.0 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|212224473|ref|YP_002307709.1| - 0.002 18.0 0.0 0.0033 17.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|212224473|ref|YP_002307709.1| - 0.016 14.8 0.0 0.029 13.9 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase small domain Methyltransf_30 PF05430.11 gi|212224473|ref|YP_002307709.1| - 0.042 13.7 0.0 0.072 13.0 0.0 1.4 1 0 0 1 1 1 0 S-adenosyl-L-methionine-dependent methyltransferase Methyltransf_18 PF12847.7 gi|212224473|ref|YP_002307709.1| - 0.12 12.3 0.0 0.2 11.6 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain PvlArgDC PF01862.16 gi|212224474|ref|YP_002307710.1| - 8.5e-38 129.7 0.1 9.9e-38 129.5 0.1 1.0 1 0 0 1 1 1 1 Pyruvoyl-dependent arginine decarboxylase (PvlArgDC) PepSY_2 PF13670.6 gi|212224474|ref|YP_002307710.1| - 0.041 13.9 0.1 0.085 12.9 0.1 1.6 1 0 0 1 1 1 0 Peptidase propeptide and YPEB domain Na_H_Exchanger PF00999.21 gi|212224475|ref|YP_002307711.1| - 2.4e-29 102.3 36.3 2.8e-29 102.1 36.3 1.0 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family TraL PF07178.11 gi|212224475|ref|YP_002307711.1| - 3.5 8.2 10.3 19 5.8 0.3 4.6 4 2 1 6 6 6 0 TraL protein ACT PF01842.25 gi|212224476|ref|YP_002307712.1| - 7.8e-11 41.6 0.2 1.2e-10 41.0 0.2 1.3 1 0 0 1 1 1 1 ACT domain ACT_4 PF13291.6 gi|212224476|ref|YP_002307712.1| - 0.00015 22.2 0.0 0.00025 21.6 0.0 1.3 1 0 0 1 1 1 1 ACT domain ACT_6 PF13740.6 gi|212224476|ref|YP_002307712.1| - 0.04 13.9 0.0 0.079 13.0 0.0 1.5 1 1 0 1 1 1 0 ACT domain Proton_antipo_M PF00361.20 gi|212224477|ref|YP_002307713.1| - 4e-50 170.7 21.3 4e-50 170.7 21.3 1.9 2 0 0 2 2 2 1 Proton-conducting membrane transporter NADHdeh_related PF10125.9 gi|212224477|ref|YP_002307713.1| - 1.7e-05 24.3 3.7 1.7e-05 24.3 3.7 2.7 2 0 0 2 2 2 1 NADH dehydrogenase I, subunit N related protein Oxidored_q2 PF00420.24 gi|212224478|ref|YP_002307714.1| - 3.2e-16 58.8 0.4 3.5e-16 58.7 0.4 1.0 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L DUF4040 PF13244.6 gi|212224478|ref|YP_002307714.1| - 0.17 12.1 6.6 0.25 11.5 0.4 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4040) DUF2108 PF09881.9 gi|212224478|ref|YP_002307714.1| - 0.28 11.2 5.1 0.087 12.8 1.9 1.9 1 1 1 2 2 2 0 Predicted membrane protein (DUF2108) DUF2107 PF09880.9 gi|212224478|ref|YP_002307714.1| - 0.37 10.9 0.2 0.37 10.9 0.2 2.1 2 0 0 2 2 2 0 Predicted membrane protein (DUF2107) MnhB PF04039.13 gi|212224479|ref|YP_002307715.1| - 1.2e-25 90.2 11.7 1.5e-25 89.9 11.7 1.1 1 0 0 1 1 1 1 Domain related to MnhB subunit of Na+/H+ antiporter EcsB PF05975.12 gi|212224479|ref|YP_002307715.1| - 0.011 14.7 0.2 0.011 14.7 0.2 1.7 1 1 1 2 2 2 0 Bacterial ABC transporter protein EcsB DUF4040 PF13244.6 gi|212224481|ref|YP_002307717.1| - 9.6e-11 41.7 8.3 1.2e-10 41.4 8.3 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4040) TspO_MBR PF03073.15 gi|212224481|ref|YP_002307717.1| - 0.0097 16.0 5.3 0.01 15.9 5.3 1.0 1 0 0 1 1 1 1 TspO/MBR family Coiled-coil_56 PF09813.9 gi|212224481|ref|YP_002307717.1| - 0.17 11.9 0.8 0.26 11.4 0.2 1.6 1 1 1 2 2 2 0 Coiled-coil domain-containing protein 56 DUF2070 PF09843.9 gi|212224481|ref|YP_002307717.1| - 0.21 9.8 8.7 0.21 9.8 8.7 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) PhaG_MnhG_YufB PF03334.14 gi|212224482|ref|YP_002307718.1| - 2.8e-23 81.9 9.5 3.3e-23 81.7 9.5 1.0 1 0 0 1 1 1 1 Na+/H+ antiporter subunit MrpF_PhaF PF04066.13 gi|212224483|ref|YP_002307719.1| - 3.2e-15 56.2 1.7 3.2e-15 56.2 1.7 1.6 2 0 0 2 2 2 1 Multiple resistance and pH regulation protein F (MrpF / PhaF) RDD PF06271.12 gi|212224483|ref|YP_002307719.1| - 0.029 14.6 1.9 0.037 14.2 1.9 1.1 1 0 0 1 1 1 0 RDD family NdhL PF10716.9 gi|212224483|ref|YP_002307719.1| - 6.8 6.7 7.2 2.8 8.0 0.2 2.3 2 1 0 2 2 2 0 NADH dehydrogenase transmembrane subunit MNHE PF01899.16 gi|212224484|ref|YP_002307720.1| - 1.1e-39 135.4 1.0 1.4e-39 135.2 1.0 1.1 1 0 0 1 1 1 1 Na+/H+ ion antiporter subunit GCV_H PF01597.19 gi|212224485|ref|YP_002307721.1| - 4.7e-48 162.1 1.8 5.3e-48 161.9 1.8 1.0 1 0 0 1 1 1 1 Glycine cleavage H-protein Biotin_lipoyl PF00364.22 gi|212224485|ref|YP_002307721.1| - 2e-08 34.0 0.5 4.6e-08 32.8 0.5 1.6 1 0 0 1 1 1 1 Biotin-requiring enzyme RnfC_N PF13375.6 gi|212224485|ref|YP_002307721.1| - 0.00017 21.5 0.0 0.0002 21.3 0.0 1.3 1 0 0 1 1 1 1 RnfC Barrel sandwich hybrid domain Biotin_lipoyl_2 PF13533.6 gi|212224485|ref|YP_002307721.1| - 0.0012 18.7 0.1 0.31 10.9 0.0 2.9 2 1 1 3 3 3 2 Biotin-lipoyl like DnaA_N PF11638.8 gi|212224485|ref|YP_002307721.1| - 0.16 11.8 0.0 0.38 10.5 0.0 1.8 1 1 0 1 1 1 0 DnaA N-terminal domain Pyr_redox_2 PF07992.14 gi|212224487|ref|YP_002307723.1| - 3.4e-39 134.9 2.5 5.3e-39 134.2 2.5 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Fer4_20 PF14691.6 gi|212224487|ref|YP_002307723.1| - 3.4e-39 133.1 0.7 5.5e-39 132.4 0.7 1.3 1 0 0 1 1 1 1 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Pyr_redox PF00070.27 gi|212224487|ref|YP_002307723.1| - 3.6e-15 56.3 5.7 5.8e-07 30.0 0.1 3.8 3 1 0 3 3 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|212224487|ref|YP_002307723.1| - 3.7e-13 49.4 3.7 2.8e-08 33.4 0.1 2.7 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase AlaDh_PNT_C PF01262.21 gi|212224487|ref|YP_002307723.1| - 3.8e-10 39.4 0.6 0.00024 20.5 0.0 2.3 2 0 0 2 2 2 2 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_8 PF13450.6 gi|212224487|ref|YP_002307723.1| - 1e-09 38.5 1.4 1.4e-07 31.6 0.4 2.5 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain GIDA PF01134.22 gi|212224487|ref|YP_002307723.1| - 1.5e-08 34.2 4.5 0.00025 20.3 0.2 2.8 3 0 0 3 3 3 2 Glucose inhibited division protein A 2-Hacid_dh_C PF02826.19 gi|212224487|ref|YP_002307723.1| - 2.1e-08 33.7 0.2 0.00084 18.7 0.0 2.8 3 0 0 3 3 3 2 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HI0933_like PF03486.14 gi|212224487|ref|YP_002307723.1| - 4.4e-08 32.3 4.6 5.7e-05 22.0 0.8 2.5 2 0 0 2 2 2 2 HI0933-like protein FAD_binding_3 PF01494.19 gi|212224487|ref|YP_002307723.1| - 7e-08 32.1 0.9 3.1e-05 23.4 0.2 2.2 2 0 0 2 2 2 2 FAD binding domain FMO-like PF00743.19 gi|212224487|ref|YP_002307723.1| - 2.5e-07 29.5 0.0 1.1e-05 24.0 0.0 2.1 2 0 0 2 2 2 1 Flavin-binding monooxygenase-like Thi4 PF01946.17 gi|212224487|ref|YP_002307723.1| - 5.9e-07 29.0 0.6 0.00013 21.3 0.2 2.4 2 0 0 2 2 2 1 Thi4 family FAD_binding_2 PF00890.24 gi|212224487|ref|YP_002307723.1| - 1.2e-06 27.9 8.1 0.00021 20.5 1.5 2.7 3 0 0 3 3 3 2 FAD binding domain FAD_oxidored PF12831.7 gi|212224487|ref|YP_002307723.1| - 4.4e-06 26.3 3.1 0.0078 15.6 0.1 2.2 2 0 0 2 2 2 2 FAD dependent oxidoreductase Shikimate_DH PF01488.20 gi|212224487|ref|YP_002307723.1| - 8.1e-06 25.9 0.3 0.25 11.4 0.0 3.4 3 0 0 3 3 3 1 Shikimate / quinate 5-dehydrogenase DAO PF01266.24 gi|212224487|ref|YP_002307723.1| - 9.1e-06 25.5 5.7 0.0024 17.5 2.1 3.4 3 0 0 3 3 3 1 FAD dependent oxidoreductase PALP PF00291.25 gi|212224487|ref|YP_002307723.1| - 1.3e-05 24.8 0.0 0.034 13.6 0.0 2.3 2 0 0 2 2 2 2 Pyridoxal-phosphate dependent enzyme IlvN PF07991.12 gi|212224487|ref|YP_002307723.1| - 1.5e-05 24.6 0.5 0.028 14.0 0.0 2.4 2 0 0 2 2 2 2 Acetohydroxy acid isomeroreductase, NADPH-binding domain NAD_binding_7 PF13241.6 gi|212224487|ref|YP_002307723.1| - 2.6e-05 24.6 0.6 0.14 12.6 0.1 2.6 2 1 0 2 2 2 2 Putative NAD(P)-binding Amino_oxidase PF01593.24 gi|212224487|ref|YP_002307723.1| - 0.0002 20.8 2.8 0.0032 16.8 0.4 2.3 2 0 0 2 2 2 1 Flavin containing amine oxidoreductase F420_oxidored PF03807.17 gi|212224487|ref|YP_002307723.1| - 0.00055 20.5 4.6 0.09 13.4 0.5 3.5 3 1 0 3 3 3 1 NADP oxidoreductase coenzyme F420-dependent 3HCDH_N PF02737.18 gi|212224487|ref|YP_002307723.1| - 0.0012 18.8 0.6 0.23 11.3 0.1 2.3 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain YjeF_N PF03853.15 gi|212224487|ref|YP_002307723.1| - 0.0018 18.2 0.0 2 8.3 0.0 2.5 2 0 0 2 2 2 2 YjeF-related protein N-terminus XdhC_C PF13478.6 gi|212224487|ref|YP_002307723.1| - 0.0063 17.0 0.0 2.9 8.4 0.0 2.6 2 0 0 2 2 2 1 XdhC Rossmann domain TrkA_N PF02254.18 gi|212224487|ref|YP_002307723.1| - 0.014 15.6 1.2 9.2 6.6 0.1 3.2 3 0 0 3 3 3 0 TrkA-N domain AdoHcyase_NAD PF00670.21 gi|212224487|ref|YP_002307723.1| - 0.022 14.8 0.9 0.12 12.4 0.1 2.5 2 0 0 2 2 2 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain Lycopene_cycl PF05834.12 gi|212224487|ref|YP_002307723.1| - 0.044 12.8 2.5 0.08 12.0 0.4 2.1 2 0 0 2 2 2 0 Lycopene cyclase protein NAD_binding_2 PF03446.15 gi|212224487|ref|YP_002307723.1| - 0.079 13.1 0.1 4 7.6 0.0 2.5 2 0 0 2 2 2 0 NAD binding domain of 6-phosphogluconate dehydrogenase Mur_ligase PF01225.25 gi|212224487|ref|YP_002307723.1| - 0.1 12.9 0.1 0.43 10.9 0.1 2.1 2 0 0 2 2 1 0 Mur ligase family, catalytic domain NAD_binding_9 PF13454.6 gi|212224487|ref|YP_002307723.1| - 0.11 12.5 3.1 0.15 12.0 0.3 2.4 3 0 0 3 3 2 0 FAD-NAD(P)-binding Fer4_10 PF13237.6 gi|212224487|ref|YP_002307723.1| - 0.29 11.3 5.7 0.56 10.4 5.7 1.5 1 0 0 1 1 1 0 4Fe-4S dicluster domain UDPG_MGDP_dh_N PF03721.14 gi|212224487|ref|YP_002307723.1| - 0.5 9.9 3.9 0.94 9.0 0.2 3.1 3 1 0 3 3 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain ApbA PF02558.16 gi|212224487|ref|YP_002307723.1| - 0.84 9.3 3.0 1.4 8.6 1.5 2.1 2 0 0 2 2 2 0 Ketopantoate reductase PanE/ApbA DHODB_Fe-S_bind PF10418.9 gi|212224488|ref|YP_002307724.1| - 4.6e-12 45.6 3.1 7.3e-12 44.9 3.1 1.3 1 0 0 1 1 1 1 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B Fer2_3 PF13085.6 gi|212224488|ref|YP_002307724.1| - 0.085 12.9 0.1 0.15 12.0 0.1 1.4 1 0 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain GCD14 PF08704.10 gi|212224490|ref|YP_002307726.1| - 1.7e-28 100.0 0.0 4.3e-27 95.4 0.0 2.0 1 1 1 2 2 2 1 tRNA methyltransferase complex GCD14 subunit PCMT PF01135.19 gi|212224490|ref|YP_002307726.1| - 2.2e-10 40.7 0.0 2.8e-10 40.3 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_31 PF13847.6 gi|212224490|ref|YP_002307726.1| - 8.3e-10 38.7 0.0 1.2e-09 38.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.20 gi|212224490|ref|YP_002307726.1| - 2.4e-06 26.8 0.0 3.8e-06 26.2 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase GCD14_N PF14801.6 gi|212224490|ref|YP_002307726.1| - 4.2e-06 26.5 0.1 1.2e-05 25.1 0.1 1.9 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit N-term Methyltransf_25 PF13649.6 gi|212224490|ref|YP_002307726.1| - 4.7e-06 27.2 0.0 9.1e-06 26.3 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|212224490|ref|YP_002307726.1| - 1.1e-05 24.9 0.0 2.5e-05 23.8 0.0 1.5 1 1 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_11 PF08241.12 gi|212224490|ref|YP_002307726.1| - 0.00019 22.0 0.0 0.00039 21.0 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.13 gi|212224490|ref|YP_002307726.1| - 0.00049 19.6 0.0 0.00069 19.1 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) CMAS PF02353.20 gi|212224490|ref|YP_002307726.1| - 0.00092 18.6 0.0 0.0017 17.7 0.0 1.3 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_18 PF12847.7 gi|212224490|ref|YP_002307726.1| - 0.0019 18.2 0.0 0.0029 17.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|212224490|ref|YP_002307726.1| - 0.0026 17.3 0.0 0.017 14.6 0.0 2.2 2 1 0 2 2 2 1 Methyltransferase small domain Methyltransf_24 PF13578.6 gi|212224490|ref|YP_002307726.1| - 0.0028 18.7 0.0 0.0086 17.1 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain Met_10 PF02475.16 gi|212224490|ref|YP_002307726.1| - 0.008 15.9 0.0 0.012 15.4 0.0 1.5 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_16 PF10294.9 gi|212224490|ref|YP_002307726.1| - 0.011 15.4 0.0 0.019 14.7 0.0 1.3 1 0 0 1 1 1 0 Lysine methyltransferase Methyltransf_3 PF01596.17 gi|212224490|ref|YP_002307726.1| - 0.019 14.1 0.0 0.026 13.7 0.0 1.2 1 0 0 1 1 1 0 O-methyltransferase Methyltransf_12 PF08242.12 gi|212224490|ref|YP_002307726.1| - 0.076 13.8 0.0 0.21 12.4 0.0 1.8 1 1 0 1 1 1 0 Methyltransferase domain DUF257 PF03192.13 gi|212224491|ref|YP_002307727.1| - 3.5e-08 33.5 0.4 6.4e-08 32.6 0.4 1.4 1 1 0 1 1 1 1 Pyrococcus protein of unknown function, DUF257 SRP19 PF01922.17 gi|212224492|ref|YP_002307728.1| - 5.7e-15 56.0 0.3 7.3e-15 55.7 0.3 1.2 1 0 0 1 1 1 1 SRP19 protein Ub-Mut7C PF14451.6 gi|212224492|ref|YP_002307728.1| - 0.094 12.6 0.0 0.12 12.2 0.0 1.2 1 0 0 1 1 1 0 Mut7-C ubiquitin AsnC_trans_reg PF01037.21 gi|212224493|ref|YP_002307729.1| - 4.5e-16 58.6 0.3 5e-16 58.4 0.3 1.0 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain NapD PF03927.13 gi|212224493|ref|YP_002307729.1| - 2.7e-06 27.3 1.5 3.6e-06 26.9 1.5 1.2 1 0 0 1 1 1 1 NapD protein ACT_4 PF13291.6 gi|212224493|ref|YP_002307729.1| - 0.006 17.2 0.3 1.7 9.3 0.0 2.2 2 0 0 2 2 2 2 ACT domain GYD PF08734.11 gi|212224493|ref|YP_002307729.1| - 0.051 13.5 0.1 0.064 13.2 0.1 1.3 1 0 0 1 1 1 0 GYD domain DEAD PF00270.29 gi|212224494|ref|YP_002307730.1| - 2.4e-25 89.3 0.0 4.9e-25 88.3 0.0 1.5 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|212224494|ref|YP_002307730.1| - 4.1e-12 46.4 0.0 7.5e-11 42.4 0.0 2.9 2 1 0 2 2 2 1 Helicase conserved C-terminal domain HHH_5 PF14520.6 gi|212224494|ref|YP_002307730.1| - 8e-11 42.4 0.1 4e-10 40.1 0.0 2.3 2 0 0 2 2 2 1 Helix-hairpin-helix domain ResIII PF04851.15 gi|212224494|ref|YP_002307730.1| - 3.1e-08 33.8 0.0 7.8e-08 32.5 0.0 1.7 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit DNA_pol_lambd_f PF10391.9 gi|212224494|ref|YP_002307730.1| - 9.2e-06 25.4 0.0 0.00012 21.8 0.0 2.4 2 0 0 2 2 2 1 Fingers domain of DNA polymerase lambda HHH PF00633.23 gi|212224494|ref|YP_002307730.1| - 8.5e-05 22.2 0.0 0.11 12.4 0.1 2.8 2 0 0 2 2 2 2 Helix-hairpin-helix motif HHH_2 PF12826.7 gi|212224494|ref|YP_002307730.1| - 9.3e-05 22.5 0.0 0.00032 20.7 0.0 1.9 1 0 0 1 1 1 1 Helix-hairpin-helix motif Cdd1 PF11731.8 gi|212224494|ref|YP_002307730.1| - 0.0022 18.2 0.0 0.0056 16.9 0.0 1.8 1 0 0 1 1 1 1 Pathogenicity locus AAA_17 PF13207.6 gi|212224495|ref|YP_002307731.1| - 1.5e-21 77.2 0.6 1.2e-20 74.3 0.2 1.9 1 1 1 2 2 2 1 AAA domain AAA_18 PF13238.6 gi|212224495|ref|YP_002307731.1| - 3.7e-17 63.1 0.1 1e-16 61.7 0.0 1.6 1 1 1 2 2 2 1 AAA domain AAA_33 PF13671.6 gi|212224495|ref|YP_002307731.1| - 1e-09 38.7 0.1 2.4e-09 37.5 0.0 1.6 1 1 1 2 2 2 1 AAA domain KTI12 PF08433.10 gi|212224495|ref|YP_002307731.1| - 0.0001 21.9 0.3 0.0001 21.9 0.3 1.7 2 0 0 2 2 2 1 Chromatin associated protein KTI12 AAA_28 PF13521.6 gi|212224495|ref|YP_002307731.1| - 0.00012 22.4 0.3 0.0003 21.1 0.0 1.7 2 0 0 2 2 2 1 AAA domain ADK PF00406.22 gi|212224495|ref|YP_002307731.1| - 0.0015 18.6 0.2 0.0019 18.3 0.2 1.4 1 1 0 1 1 1 1 Adenylate kinase AAA_16 PF13191.6 gi|212224495|ref|YP_002307731.1| - 0.0024 18.3 0.2 0.0037 17.6 0.2 1.8 1 1 0 1 1 1 1 AAA ATPase domain Zeta_toxin PF06414.12 gi|212224495|ref|YP_002307731.1| - 0.0035 16.6 0.2 0.009 15.3 0.2 1.8 1 1 0 1 1 1 1 Zeta toxin NTPase_1 PF03266.15 gi|212224495|ref|YP_002307731.1| - 0.0057 16.6 3.0 0.19 11.6 3.0 2.6 1 1 0 1 1 1 1 NTPase AAA_22 PF13401.6 gi|212224495|ref|YP_002307731.1| - 0.0061 16.8 0.3 0.015 15.6 0.3 1.7 1 1 0 1 1 1 1 AAA domain Viral_helicase1 PF01443.18 gi|212224495|ref|YP_002307731.1| - 0.0088 15.8 0.2 0.011 15.5 0.2 1.3 1 1 0 1 1 1 1 Viral (Superfamily 1) RNA helicase cobW PF02492.19 gi|212224495|ref|YP_002307731.1| - 0.014 15.0 0.0 1.4 8.5 0.0 2.2 2 1 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain AAA_14 PF13173.6 gi|212224495|ref|YP_002307731.1| - 0.031 14.3 0.0 0.093 12.8 0.0 1.7 1 1 0 1 1 1 0 AAA domain APS_kinase PF01583.20 gi|212224495|ref|YP_002307731.1| - 0.045 13.6 0.1 0.13 12.2 0.1 1.9 1 1 0 1 1 1 0 Adenylylsulphate kinase NB-ARC PF00931.22 gi|212224495|ref|YP_002307731.1| - 0.045 12.9 1.1 0.18 11.0 1.1 1.9 1 1 0 1 1 1 0 NB-ARC domain dNK PF01712.19 gi|212224495|ref|YP_002307731.1| - 0.066 13.1 0.0 2.8 7.8 0.0 2.2 1 1 0 2 2 2 0 Deoxynucleoside kinase ATP_bind_2 PF03668.15 gi|212224495|ref|YP_002307731.1| - 0.11 11.8 0.1 0.14 11.4 0.1 1.2 1 0 0 1 1 1 0 P-loop ATPase protein family ATPase PF06745.13 gi|212224495|ref|YP_002307731.1| - 0.12 11.7 1.3 1.4 8.2 1.3 2.3 1 1 0 1 1 1 0 KaiC AAA_5 PF07728.14 gi|212224495|ref|YP_002307731.1| - 0.13 12.3 0.5 0.41 10.7 0.5 1.8 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) CPT PF07931.12 gi|212224495|ref|YP_002307731.1| - 0.14 12.0 2.4 0.29 11.0 0.8 2.1 2 1 0 2 2 1 0 Chloramphenicol phosphotransferase-like protein AAA_19 PF13245.6 gi|212224495|ref|YP_002307731.1| - 0.21 11.9 1.1 2.4 8.5 1.1 2.1 1 1 0 1 1 1 0 AAA domain ATPase_2 PF01637.18 gi|212224495|ref|YP_002307731.1| - 0.35 10.8 2.4 1.6 8.6 2.4 2.0 1 1 0 1 1 1 0 ATPase domain predominantly from Archaea Zip PF02535.22 gi|212224496|ref|YP_002307732.1| - 1.9e-22 79.9 20.5 1.8e-20 73.5 4.8 2.4 1 1 1 2 2 2 2 ZIP Zinc transporter RNA_binding PF01877.17 gi|212224497|ref|YP_002307733.1| - 4.7e-18 65.6 0.0 6.1e-18 65.2 0.0 1.1 1 0 0 1 1 1 1 RNA binding ACOX PF01756.19 gi|212224497|ref|YP_002307733.1| - 0.018 14.6 0.0 0.041 13.5 0.0 1.5 1 1 1 2 2 2 0 Acyl-CoA oxidase ABC2_membrane_3 PF12698.7 gi|212224498|ref|YP_002307734.1| - 1.1e-34 120.1 19.3 1.4e-34 119.8 19.3 1.0 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.7 gi|212224498|ref|YP_002307734.1| - 2.9e-18 66.1 28.0 4.7e-18 65.5 28.0 1.3 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane PF01061.24 gi|212224498|ref|YP_002307734.1| - 5.4e-16 58.6 26.7 1.7e-14 53.7 18.4 2.5 3 0 0 3 3 3 2 ABC-2 type transporter ABC2_membrane_4 PF12730.7 gi|212224498|ref|YP_002307734.1| - 1.3e-06 28.5 15.5 1.3e-06 28.5 15.5 2.3 2 1 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.6 gi|212224498|ref|YP_002307734.1| - 0.00026 20.6 23.6 0.00026 20.6 23.6 2.5 2 1 0 2 2 2 1 ABC-2 family transporter protein ABC_tran PF00005.27 gi|212224499|ref|YP_002307735.1| - 2.7e-28 99.2 0.0 3.6e-28 98.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|212224499|ref|YP_002307735.1| - 1.8e-12 47.7 0.4 4.8e-05 23.3 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system Rad17 PF03215.15 gi|212224499|ref|YP_002307735.1| - 4.5e-05 23.5 0.0 6e-05 23.0 0.0 1.2 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_29 PF13555.6 gi|212224499|ref|YP_002307735.1| - 0.00014 21.5 0.1 0.00052 19.7 0.1 1.9 2 0 0 2 2 2 1 P-loop containing region of AAA domain AAA_15 PF13175.6 gi|212224499|ref|YP_002307735.1| - 0.0003 20.6 0.0 0.0012 18.6 0.0 1.7 1 1 0 2 2 2 1 AAA ATPase domain SMC_N PF02463.19 gi|212224499|ref|YP_002307735.1| - 0.0019 17.7 0.1 1.3 8.4 0.1 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|212224499|ref|YP_002307735.1| - 0.0022 18.5 0.0 0.0028 18.2 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_27 PF13514.6 gi|212224499|ref|YP_002307735.1| - 0.02 14.5 0.0 0.032 13.8 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.6 gi|212224499|ref|YP_002307735.1| - 0.033 14.5 0.0 0.061 13.6 0.0 1.5 1 1 0 1 1 1 0 AAA domain SRP54 PF00448.22 gi|212224499|ref|YP_002307735.1| - 0.045 13.4 0.1 0.089 12.4 0.1 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_30 PF13604.6 gi|212224499|ref|YP_002307735.1| - 0.094 12.4 0.2 0.13 12.0 0.2 1.5 1 1 0 1 1 1 0 AAA domain AAA_28 PF13521.6 gi|212224499|ref|YP_002307735.1| - 0.15 12.3 0.0 0.25 11.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain HTH_3 PF01381.22 gi|212224500|ref|YP_002307736.1| - 2.6e-20 72.2 0.1 2.9e-20 72.1 0.1 1.0 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.7 gi|212224500|ref|YP_002307736.1| - 5.3e-16 58.4 0.1 6.5e-16 58.1 0.1 1.0 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_31 PF13560.6 gi|212224500|ref|YP_002307736.1| - 1.1e-12 48.1 0.0 1.2e-12 47.9 0.0 1.0 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_25 PF13413.6 gi|212224500|ref|YP_002307736.1| - 2.2e-07 30.6 0.2 2.8e-07 30.3 0.2 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_26 PF13443.6 gi|212224500|ref|YP_002307736.1| - 7.6e-07 29.5 0.0 8.4e-07 29.3 0.0 1.0 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain HTH_11 PF08279.12 gi|212224500|ref|YP_002307736.1| - 3.6e-05 23.6 0.2 5.1e-05 23.1 0.2 1.2 1 0 0 1 1 1 1 HTH domain Sigma70_r4 PF04545.16 gi|212224500|ref|YP_002307736.1| - 0.00015 21.2 0.5 0.00025 20.5 0.5 1.3 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_23 PF13384.6 gi|212224500|ref|YP_002307736.1| - 0.00025 20.7 0.1 0.00063 19.5 0.1 1.6 2 0 0 2 2 2 1 Homeodomain-like domain HTH_37 PF13744.6 gi|212224500|ref|YP_002307736.1| - 0.00032 20.6 0.0 0.00042 20.2 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.6 gi|212224500|ref|YP_002307736.1| - 0.00052 19.5 0.1 0.00071 19.1 0.1 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_Crp_2 PF13545.6 gi|212224500|ref|YP_002307736.1| - 0.001 19.0 0.1 0.0017 18.3 0.1 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_38 PF13936.6 gi|212224500|ref|YP_002307736.1| - 0.0064 16.2 0.1 0.016 14.9 0.1 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain YdaS_antitoxin PF15943.5 gi|212224500|ref|YP_002307736.1| - 0.0066 16.3 0.0 0.0072 16.2 0.0 1.3 1 0 0 1 1 1 1 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_7 PF02796.15 gi|212224500|ref|YP_002307736.1| - 0.0078 16.3 0.4 0.017 15.2 0.2 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain of resolvase MarR PF01047.22 gi|212224500|ref|YP_002307736.1| - 0.009 15.9 0.0 0.025 14.5 0.0 1.6 2 0 0 2 2 2 1 MarR family MarR_2 PF12802.7 gi|212224500|ref|YP_002307736.1| - 0.01 15.7 0.1 0.015 15.2 0.1 1.3 1 0 0 1 1 1 0 MarR family TnsD PF15978.5 gi|212224500|ref|YP_002307736.1| - 0.03 13.3 0.1 0.033 13.2 0.1 1.1 1 0 0 1 1 1 0 Tn7-like transposition protein D HTH_29 PF13551.6 gi|212224500|ref|YP_002307736.1| - 0.034 14.1 0.0 0.055 13.5 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn helix Crp PF00325.20 gi|212224500|ref|YP_002307736.1| - 0.045 13.4 0.2 0.15 11.8 0.1 1.8 2 0 0 2 2 2 0 Bacterial regulatory proteins, crp family GntR PF00392.21 gi|212224500|ref|YP_002307736.1| - 0.048 13.3 0.1 0.15 11.7 0.1 1.8 1 1 1 2 2 2 0 Bacterial regulatory proteins, gntR family HTH_17 PF12728.7 gi|212224500|ref|YP_002307736.1| - 0.058 13.6 0.0 0.087 13.0 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_AsnC-type PF13404.6 gi|212224500|ref|YP_002307736.1| - 0.059 13.2 0.2 0.086 12.7 0.2 1.3 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain HTH_10 PF04967.12 gi|212224500|ref|YP_002307736.1| - 0.064 13.1 0.1 0.15 11.9 0.0 1.6 1 1 1 2 2 2 0 HTH DNA binding domain Sigma70_r4_2 PF08281.12 gi|212224500|ref|YP_002307736.1| - 0.064 12.9 0.0 0.11 12.2 0.0 1.3 1 0 0 1 1 1 0 Sigma-70, region 4 Sigma70_ECF PF07638.11 gi|212224500|ref|YP_002307736.1| - 0.074 12.9 0.1 0.095 12.6 0.1 1.2 1 0 0 1 1 1 0 ECF sigma factor HTH_28 PF13518.6 gi|212224500|ref|YP_002307736.1| - 0.083 13.0 0.1 0.14 12.3 0.1 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_20 PF12840.7 gi|212224500|ref|YP_002307736.1| - 0.1 12.7 0.1 0.14 12.2 0.1 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain CENP-B_N PF04218.13 gi|212224500|ref|YP_002307736.1| - 0.12 12.0 0.1 0.34 10.6 0.0 1.7 2 0 0 2 2 2 0 CENP-B N-terminal DNA-binding domain DUF1323 PF07037.11 gi|212224500|ref|YP_002307736.1| - 0.14 12.6 0.0 0.17 12.2 0.0 1.2 1 0 0 1 1 1 0 Putative transcription regulator (DUF1323) MqsA_antitoxin PF15731.5 gi|212224500|ref|YP_002307736.1| - 0.17 12.0 0.1 0.17 11.9 0.1 1.1 1 0 0 1 1 1 0 Antitoxin component of bacterial toxin-antitoxin system, MqsA DUF2178 PF09946.9 gi|212224501|ref|YP_002307737.1| - 5.7e-05 23.2 0.2 6.8e-05 23.0 0.2 1.2 1 0 0 1 1 1 1 Predicted membrane protein (DUF2178) UPF0154 PF03672.13 gi|212224501|ref|YP_002307737.1| - 0.21 11.6 1.2 0.25 11.4 0.1 1.7 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0154) Herpes_US9 PF06072.11 gi|212224501|ref|YP_002307737.1| - 0.33 10.9 2.9 0.37 10.7 0.5 2.1 2 0 0 2 2 2 0 Alphaherpesvirus tegument protein US9 DUF3169 PF11368.8 gi|212224501|ref|YP_002307737.1| - 0.45 10.0 7.6 0.14 11.7 0.4 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF3169) DUF2178 PF09946.9 gi|212224502|ref|YP_002307738.1| - 7.3e-05 22.9 0.6 0.00044 20.4 0.5 1.9 1 1 0 1 1 1 1 Predicted membrane protein (DUF2178) DUF962 PF06127.11 gi|212224502|ref|YP_002307738.1| - 0.01 15.9 0.7 0.023 14.8 0.7 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF962) 2TM PF13239.6 gi|212224502|ref|YP_002307738.1| - 0.055 13.8 11.5 0.053 13.8 5.7 2.1 2 0 0 2 2 2 0 2TM domain FixQ PF05545.11 gi|212224502|ref|YP_002307738.1| - 0.25 11.3 0.2 0.25 11.3 0.2 3.0 4 0 0 4 4 4 0 Cbb3-type cytochrome oxidase component FixQ DUF3792 PF12670.7 gi|212224502|ref|YP_002307738.1| - 1.7 8.8 10.9 2.5 8.3 2.5 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3792) PHO4 PF01384.20 gi|212224502|ref|YP_002307738.1| - 4.1 6.4 7.3 1.1 8.2 0.8 2.4 1 1 1 2 2 2 0 Phosphate transporter family DUF2663 PF10864.8 gi|212224503|ref|YP_002307739.1| - 0.019 15.4 4.0 0.11 12.9 0.0 2.6 1 1 2 3 3 3 0 Protein of unknown function (DUF2663) DUF2178 PF09946.9 gi|212224503|ref|YP_002307739.1| - 0.029 14.5 0.3 0.029 14.5 0.3 1.9 2 0 0 2 2 2 0 Predicted membrane protein (DUF2178) Myelin_PLP PF01275.19 gi|212224503|ref|YP_002307739.1| - 0.35 10.7 6.8 0.55 10.0 1.2 2.1 2 0 0 2 2 2 0 Myelin proteolipid protein (PLP or lipophilin) DUF3043 PF11241.8 gi|212224503|ref|YP_002307739.1| - 2.8 8.0 6.1 2.3 8.2 0.1 2.6 2 1 1 3 3 3 0 Protein of unknown function (DUF3043) Radical_SAM PF04055.21 gi|212224504|ref|YP_002307740.1| - 6.6e-17 62.4 0.1 1e-16 61.8 0.1 1.3 1 0 0 1 1 1 1 Radical SAM superfamily SPASM PF13186.6 gi|212224504|ref|YP_002307740.1| - 1.1e-16 61.0 0.2 3.3e-16 59.5 0.2 1.9 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain Fer4_12 PF13353.6 gi|212224504|ref|YP_002307740.1| - 1.4e-06 28.6 0.0 3.5e-06 27.3 0.0 1.6 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|212224504|ref|YP_002307740.1| - 7.8e-06 26.0 0.0 1.4e-05 25.2 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain YebF PF13995.6 gi|212224504|ref|YP_002307740.1| - 0.085 12.9 0.0 0.16 12.0 0.0 1.4 1 0 0 1 1 1 0 YebF-like protein AFOR_C PF01314.18 gi|212224505|ref|YP_002307741.1| - 4.6e-140 467.0 0.0 5.7e-140 466.6 0.0 1.1 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.15 gi|212224505|ref|YP_002307741.1| - 2.8e-86 288.5 0.2 4.5e-86 287.8 0.2 1.3 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain Peptidase_S8 PF00082.22 gi|212224506|ref|YP_002307742.1| - 5.4e-67 226.2 15.8 8.4e-67 225.5 15.8 1.3 1 0 0 1 1 1 1 Subtilase family Tk-SP_N-pro PF18237.1 gi|212224506|ref|YP_002307742.1| - 2.5e-35 120.3 0.2 4.2e-35 119.6 0.2 1.4 1 0 0 1 1 1 1 Tk-SP N-propeptide domain PPC PF04151.15 gi|212224506|ref|YP_002307742.1| - 2.6e-11 44.5 24.3 2.2e-07 31.9 0.7 4.2 4 1 0 4 4 4 2 Bacterial pre-peptidase C-terminal domain SQHop_cyclase_N PF13249.6 gi|212224507|ref|YP_002307743.1| - 0.00012 21.3 0.4 0.52 9.3 0.2 3.2 2 1 0 2 2 2 2 Squalene-hopene cyclase N-terminal domain SQHop_cyclase_C PF13243.6 gi|212224507|ref|YP_002307743.1| - 0.00039 19.6 6.5 0.13 11.3 0.4 4.4 2 2 1 4 4 4 2 Squalene-hopene cyclase C-terminal domain Prenyltrans PF00432.21 gi|212224507|ref|YP_002307743.1| - 0.00069 19.3 0.8 0.051 13.3 0.0 4.1 5 0 0 5 5 5 1 Prenyltransferase and squalene oxidase repeat TED_complement PF07678.14 gi|212224507|ref|YP_002307743.1| - 0.00093 18.3 0.1 0.00093 18.3 0.1 3.2 5 0 0 5 5 5 1 A-macroglobulin TED domain Pec_lyase PF09492.10 gi|212224507|ref|YP_002307743.1| - 0.16 11.2 1.8 4.5 6.5 0.1 2.9 2 0 0 2 2 2 0 Pectic acid lyase NTP_transf_2 PF01909.23 gi|212224508|ref|YP_002307744.1| - 2.8e-08 33.9 0.0 6.1e-08 32.9 0.0 1.6 1 1 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|212224508|ref|YP_002307744.1| - 0.00032 20.7 0.0 0.0016 18.5 0.0 2.0 2 0 0 2 2 2 1 Polymerase beta, Nucleotidyltransferase DUF43 PF01861.16 gi|212224509|ref|YP_002307745.1| - 1.1e-119 398.1 0.2 1.4e-119 397.8 0.2 1.1 1 0 0 1 1 1 1 Branched-chain polyamine synthase A C-terminal domain DUF1217 PF06748.12 gi|212224509|ref|YP_002307745.1| - 0.0044 17.1 0.0 0.0076 16.3 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1217) N6-adenineMlase PF10237.9 gi|212224509|ref|YP_002307745.1| - 0.0089 15.8 0.0 0.014 15.3 0.0 1.4 1 0 0 1 1 1 1 Probable N6-adenine methyltransferase Methyltransf_31 PF13847.6 gi|212224509|ref|YP_002307745.1| - 0.012 15.4 0.0 0.021 14.6 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain BCL9 PF11502.8 gi|212224509|ref|YP_002307745.1| - 0.045 13.5 0.0 0.079 12.8 0.0 1.3 1 0 0 1 1 1 0 B-cell lymphoma 9 protein QueH PF02677.14 gi|212224510|ref|YP_002307746.1| - 0.2 11.8 0.0 0.81 9.8 0.0 1.9 1 1 0 1 1 1 0 Epoxyqueuosine reductase QueH FeS_assembly_P PF01883.19 gi|212224511|ref|YP_002307747.1| - 4.7e-23 81.1 1.0 2.8e-21 75.5 0.1 2.2 2 0 0 2 2 2 2 Iron-sulfur cluster assembly protein HMA PF00403.26 gi|212224511|ref|YP_002307747.1| - 0.017 15.6 3.6 3 8.4 0.0 3.0 2 1 1 3 3 3 0 Heavy-metal-associated domain DUF4342 PF14242.6 gi|212224511|ref|YP_002307747.1| - 0.11 12.6 1.8 2.7 8.0 0.2 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4342) Co_AT_N PF12557.8 gi|212224511|ref|YP_002307747.1| - 0.15 12.0 2.7 1.8 8.6 1.6 2.4 2 0 0 2 2 2 0 Cob(I)alamin adenosyltransferase N terminal Fer4_13 PF13370.6 gi|212224512|ref|YP_002307748.1| - 1.2e-18 67.4 6.5 1.4e-18 67.2 6.5 1.0 1 0 0 1 1 1 1 4Fe-4S single cluster domain of Ferredoxin I Fer4_15 PF13459.6 gi|212224512|ref|YP_002307748.1| - 1.2e-14 54.8 6.8 1.6e-14 54.4 6.8 1.2 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4 PF00037.27 gi|212224512|ref|YP_002307748.1| - 8.6e-05 22.2 7.1 0.0025 17.6 1.3 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_19 PF06902.11 gi|212224512|ref|YP_002307748.1| - 0.00019 21.4 1.2 0.00025 21.1 1.2 1.2 1 0 0 1 1 1 1 Divergent 4Fe-4S mono-cluster Fer4_10 PF13237.6 gi|212224512|ref|YP_002307748.1| - 0.0023 18.0 2.9 0.0063 16.6 3.1 1.6 1 1 1 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|212224512|ref|YP_002307748.1| - 0.015 15.9 3.1 0.047 14.3 3.2 1.7 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|212224512|ref|YP_002307748.1| - 0.015 15.4 5.8 0.059 13.5 5.9 1.8 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|212224512|ref|YP_002307748.1| - 0.15 12.1 0.7 0.15 12.1 0.7 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_2 PF12797.7 gi|212224512|ref|YP_002307748.1| - 1.6 9.0 6.2 0.43 10.8 1.0 2.5 2 1 0 2 2 2 0 4Fe-4S binding domain QRPTase_C PF01729.19 gi|212224513|ref|YP_002307749.1| - 5e-27 94.7 0.0 6.9e-27 94.3 0.0 1.2 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain NAPRTase_C PF17956.1 gi|212224513|ref|YP_002307749.1| - 7.6e-07 29.5 0.0 1.9e-06 28.3 0.0 1.7 1 0 0 1 1 1 1 Nicotinate phosphoribosyltransferase C-terminal domain QRPTase_N PF02749.16 gi|212224513|ref|YP_002307749.1| - 4.4e-06 26.7 0.0 9.1e-06 25.6 0.0 1.5 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, N-terminal domain NAPRTase_N PF17767.1 gi|212224513|ref|YP_002307749.1| - 0.00029 21.2 0.0 0.017 15.5 0.0 2.2 1 1 1 2 2 2 1 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain Zn-ribbon_8 PF09723.10 gi|212224513|ref|YP_002307749.1| - 0.019 15.0 0.2 0.045 13.9 0.2 1.7 1 0 0 1 1 1 0 Zinc ribbon domain NIR_SIR_ferr PF03460.17 gi|212224513|ref|YP_002307749.1| - 0.092 12.6 0.0 0.27 11.1 0.0 1.7 1 0 0 1 1 1 0 Nitrite/Sulfite reductase ferredoxin-like half domain DNA_ligase_ZBD PF03119.16 gi|212224513|ref|YP_002307749.1| - 0.1 12.6 1.7 0.45 10.6 0.6 2.3 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain Lactamase_B_2 PF12706.7 gi|212224514|ref|YP_002307750.1| - 2.9e-08 33.5 0.0 3.9e-08 33.1 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|212224514|ref|YP_002307750.1| - 2e-05 24.5 0.0 3.4e-05 23.8 0.0 1.4 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|212224514|ref|YP_002307750.1| - 0.00084 19.4 0.1 0.0025 17.8 0.1 2.0 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Cas_Cas6 PF01881.16 gi|212224515|ref|YP_002307751.1| - 1e-19 71.5 0.2 1.3e-19 71.3 0.2 1.0 1 0 0 1 1 1 1 CRISPR associated protein Cas6 Glycos_transf_4 PF00953.21 gi|212224516|ref|YP_002307752.1| - 5.5e-33 114.2 16.3 1.1e-32 113.3 16.3 1.5 1 0 0 1 1 1 1 Glycosyl transferase family 4 DUF5353 PF17304.2 gi|212224516|ref|YP_002307752.1| - 0.019 14.7 0.1 0.065 13.0 0.1 1.9 1 0 0 1 1 1 0 Family of unknown function (DUF5353) Phage_holin_3_2 PF04550.12 gi|212224516|ref|YP_002307752.1| - 3 8.5 7.6 7.7 7.1 0.3 3.2 3 0 0 3 3 3 0 Phage holin family 2 Glycos_transf_2 PF00535.26 gi|212224517|ref|YP_002307753.1| - 2.6e-23 82.7 0.0 4e-23 82.1 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 HAD_2 PF13419.6 gi|212224517|ref|YP_002307753.1| - 2.4e-22 79.9 0.0 2.3e-21 76.7 0.0 2.6 2 1 0 2 2 2 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|212224517|ref|YP_002307753.1| - 1.4e-16 61.4 0.0 5.4e-12 46.4 0.0 2.8 2 1 1 3 3 3 2 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|212224517|ref|YP_002307753.1| - 6.5e-07 29.9 0.0 1.3e-06 28.9 0.0 1.6 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Glyco_tranf_2_3 PF13641.6 gi|212224517|ref|YP_002307753.1| - 3.4e-06 27.1 0.1 7.1e-06 26.1 0.1 1.5 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Hydrolase_like PF13242.6 gi|212224517|ref|YP_002307753.1| - 4.4e-06 26.7 0.0 1.4e-05 25.1 0.0 1.8 1 0 0 1 1 1 1 HAD-hyrolase-like Hydrolase_6 PF13344.6 gi|212224517|ref|YP_002307753.1| - 0.00017 21.7 0.0 1.1 9.4 0.0 3.0 3 0 0 3 3 3 2 Haloacid dehalogenase-like hydrolase Glyco_tranf_2_4 PF13704.6 gi|212224517|ref|YP_002307753.1| - 0.0042 17.6 0.0 0.0097 16.4 0.0 1.6 1 1 0 1 1 1 1 Glycosyl transferase family 2 DUF373 PF04123.13 gi|212224517|ref|YP_002307753.1| - 0.025 14.0 0.0 0.045 13.2 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF373) S6PP PF05116.13 gi|212224517|ref|YP_002307753.1| - 0.088 12.3 0.0 1.7 8.1 0.0 2.6 3 0 0 3 3 3 0 Sucrose-6F-phosphate phosphohydrolase Acid_PPase PF12689.7 gi|212224517|ref|YP_002307753.1| - 0.11 12.3 0.0 19 5.0 0.0 2.4 2 0 0 2 2 2 0 Acid Phosphatase DUF2304 PF10066.9 gi|212224518|ref|YP_002307754.1| - 1.4e-24 86.4 2.7 1.5e-24 86.2 2.7 1.0 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2304) LMBR1 PF04791.16 gi|212224518|ref|YP_002307754.1| - 0.00073 18.6 3.1 0.062 12.2 0.2 2.0 1 1 1 2 2 2 2 LMBR1-like membrane protein Matrilin_ccoil PF10393.9 gi|212224518|ref|YP_002307754.1| - 0.0032 17.3 0.6 0.0044 16.8 0.6 1.2 1 0 0 1 1 1 1 Trimeric coiled-coil oligomerisation domain of matrilin DUF4199 PF13858.6 gi|212224518|ref|YP_002307754.1| - 0.027 14.9 1.8 0.027 14.9 1.8 2.2 2 1 0 2 2 2 0 Protein of unknown function (DUF4199) DUF998 PF06197.13 gi|212224518|ref|YP_002307754.1| - 0.037 13.6 1.9 0.049 13.2 1.9 1.2 1 1 0 1 1 1 0 Protein of unknown function (DUF998) dCMP_cyt_deam_1 PF00383.23 gi|212224519|ref|YP_002307755.1| - 3.7e-29 100.6 0.3 4.9e-29 100.2 0.3 1.2 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region MafB19-deam PF14437.6 gi|212224519|ref|YP_002307755.1| - 2.2e-20 72.8 0.0 2.6e-20 72.6 0.0 1.1 1 0 0 1 1 1 1 MafB19-like deaminase Bd3614-deam PF14439.6 gi|212224519|ref|YP_002307755.1| - 0.0037 17.3 0.1 0.0077 16.3 0.1 1.4 1 1 0 1 1 1 1 Bd3614-like deaminase APOBEC3 PF18771.1 gi|212224519|ref|YP_002307755.1| - 0.05 13.7 0.0 0.15 12.2 0.0 1.5 1 1 0 1 1 1 0 APOBEC3 Peptidase_M48 PF01435.18 gi|212224520|ref|YP_002307756.1| - 7e-22 78.2 0.0 1e-21 77.6 0.0 1.2 1 0 0 1 1 1 1 Peptidase family M48 Peptidase_M56 PF05569.11 gi|212224520|ref|YP_002307756.1| - 0.0099 15.1 1.8 0.011 14.9 0.0 1.9 2 0 0 2 2 2 1 BlaR1 peptidase M56 Zn_peptidase_2 PF04298.12 gi|212224520|ref|YP_002307756.1| - 0.016 14.6 0.7 0.058 12.8 0.7 1.9 1 1 0 1 1 1 0 Putative neutral zinc metallopeptidase AGTRAP PF06396.11 gi|212224520|ref|YP_002307756.1| - 0.036 13.9 0.0 0.06 13.1 0.0 1.4 1 0 0 1 1 1 0 Angiotensin II, type I receptor-associated protein (AGTRAP) Penicillinase_R PF03965.16 gi|212224521|ref|YP_002307757.1| - 5.9e-16 58.8 0.2 7.4e-16 58.5 0.2 1.1 1 0 0 1 1 1 1 Penicillinase repressor Replic_Relax PF13814.6 gi|212224521|ref|YP_002307757.1| - 0.00038 20.6 0.0 0.00057 20.0 0.0 1.4 2 0 0 2 2 2 1 Replication-relaxation HxlR PF01638.17 gi|212224521|ref|YP_002307757.1| - 0.0054 16.6 0.2 0.019 14.8 0.1 1.8 1 1 1 2 2 2 1 HxlR-like helix-turn-helix Cdc6_C PF09079.11 gi|212224521|ref|YP_002307757.1| - 0.021 14.8 0.8 0.052 13.5 0.8 1.7 1 1 0 1 1 1 0 CDC6, C terminal winged helix domain PPR_2 PF13041.6 gi|212224521|ref|YP_002307757.1| - 0.022 15.0 0.0 0.042 14.0 0.0 1.5 1 0 0 1 1 1 0 PPR repeat family FUR PF01475.19 gi|212224521|ref|YP_002307757.1| - 0.035 14.2 0.0 0.069 13.3 0.0 1.5 1 1 0 1 1 1 0 Ferric uptake regulator family PadR PF03551.14 gi|212224521|ref|YP_002307757.1| - 0.055 13.4 0.1 0.34 10.9 0.1 2.2 1 1 1 2 2 2 0 Transcriptional regulator PadR-like family TP_methylase PF00590.20 gi|212224523|ref|YP_002307759.1| - 4.6e-23 82.3 0.0 5.7e-23 82.0 0.0 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Ndufs5 PF10200.9 gi|212224523|ref|YP_002307759.1| - 0.022 15.0 0.0 0.77 10.1 0.0 2.6 3 0 0 3 3 3 0 NADH:ubiquinone oxidoreductase, NDUFS5-15kDa DUF1788 PF08747.11 gi|212224523|ref|YP_002307759.1| - 0.049 13.6 0.0 0.085 12.9 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF1788) HTH_19 PF12844.7 gi|212224524|ref|YP_002307760.1| - 1.1e-09 38.2 0.1 8.8e-09 35.3 0.0 2.2 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_3 PF01381.22 gi|212224524|ref|YP_002307760.1| - 1.7e-09 37.6 0.0 4.3e-09 36.3 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.6 gi|212224524|ref|YP_002307760.1| - 3.4e-08 33.7 0.0 7.8e-08 32.5 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain MqsA_antitoxin PF15731.5 gi|212224524|ref|YP_002307760.1| - 0.022 14.8 0.0 0.05 13.7 0.0 1.7 1 1 0 1 1 1 0 Antitoxin component of bacterial toxin-antitoxin system, MqsA HTH_11 PF08279.12 gi|212224524|ref|YP_002307760.1| - 0.076 13.0 0.0 0.26 11.2 0.0 2.0 1 0 0 1 1 1 0 HTH domain Phage_CI_repr PF07022.13 gi|212224524|ref|YP_002307760.1| - 0.11 12.7 0.0 0.15 12.1 0.0 1.5 1 1 0 1 1 1 0 Bacteriophage CI repressor helix-turn-helix domain YdaS_antitoxin PF15943.5 gi|212224524|ref|YP_002307760.1| - 0.11 12.4 0.0 0.32 10.9 0.0 1.8 1 0 0 1 1 1 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_26 PF13443.6 gi|212224524|ref|YP_002307760.1| - 0.14 12.6 0.0 0.41 11.1 0.0 1.8 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain PPS_PS PF02006.16 gi|212224525|ref|YP_002307761.1| - 1.3e-74 249.6 0.7 1.6e-74 249.3 0.7 1.1 1 0 0 1 1 1 1 Phosphopantothenate/pantothenate synthetase DHODB_Fe-S_bind PF10418.9 gi|212224526|ref|YP_002307762.1| - 2.8e-11 43.1 1.6 4.4e-11 42.4 1.6 1.3 1 0 0 1 1 1 1 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B Fer2_3 PF13085.6 gi|212224526|ref|YP_002307762.1| - 0.073 13.1 0.1 0.18 11.8 0.1 1.6 1 0 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain Peripla_BP_6 PF13458.6 gi|212224526|ref|YP_002307762.1| - 0.13 11.9 0.0 0.26 10.9 0.0 1.4 2 0 0 2 2 2 0 Periplasmic binding protein Pyr_redox_2 PF07992.14 gi|212224527|ref|YP_002307763.1| - 6.5e-42 143.8 1.8 1e-41 143.1 1.8 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Fer4_20 PF14691.6 gi|212224527|ref|YP_002307763.1| - 4e-38 129.7 0.2 6.3e-38 129.0 0.2 1.3 1 0 0 1 1 1 1 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Pyr_redox PF00070.27 gi|212224527|ref|YP_002307763.1| - 8.9e-16 58.2 4.6 1.6e-07 31.8 0.2 3.8 3 1 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|212224527|ref|YP_002307763.1| - 6.3e-14 51.9 3.3 2.7e-09 36.7 0.1 3.1 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|212224527|ref|YP_002307763.1| - 5.1e-09 36.2 1.7 3.1e-08 33.7 0.1 2.3 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain AlaDh_PNT_C PF01262.21 gi|212224527|ref|YP_002307763.1| - 4.4e-08 32.7 0.7 0.0035 16.7 0.0 2.4 2 0 0 2 2 2 2 Alanine dehydrogenase/PNT, C-terminal domain HI0933_like PF03486.14 gi|212224527|ref|YP_002307763.1| - 1.1e-06 27.6 3.1 2.6e-05 23.1 0.6 2.4 2 0 0 2 2 2 1 HI0933-like protein Thi4 PF01946.17 gi|212224527|ref|YP_002307763.1| - 3.4e-06 26.5 0.5 3.4e-06 26.5 0.5 1.9 2 0 0 2 2 2 1 Thi4 family GIDA PF01134.22 gi|212224527|ref|YP_002307763.1| - 8.2e-06 25.1 1.8 0.0016 17.6 0.1 2.6 3 0 0 3 3 3 2 Glucose inhibited division protein A FAD_binding_2 PF00890.24 gi|212224527|ref|YP_002307763.1| - 3e-05 23.3 4.7 8.3e-05 21.8 0.3 3.0 3 0 0 3 3 3 1 FAD binding domain FAD_oxidored PF12831.7 gi|212224527|ref|YP_002307763.1| - 3.1e-05 23.5 1.5 0.0017 17.8 0.0 2.2 2 0 0 2 2 2 1 FAD dependent oxidoreductase FAD_binding_3 PF01494.19 gi|212224527|ref|YP_002307763.1| - 6.1e-05 22.4 0.4 0.00018 20.9 0.1 1.8 2 0 0 2 2 2 1 FAD binding domain PALP PF00291.25 gi|212224527|ref|YP_002307763.1| - 0.00027 20.4 0.0 0.75 9.1 0.0 2.4 2 0 0 2 2 2 2 Pyridoxal-phosphate dependent enzyme Amino_oxidase PF01593.24 gi|212224527|ref|YP_002307763.1| - 0.0003 20.2 0.1 0.0082 15.5 0.0 2.7 3 0 0 3 3 3 1 Flavin containing amine oxidoreductase NAD_binding_7 PF13241.6 gi|212224527|ref|YP_002307763.1| - 0.00035 21.0 1.1 0.26 11.7 0.2 2.7 2 1 0 2 2 2 2 Putative NAD(P)-binding DAO PF01266.24 gi|212224527|ref|YP_002307763.1| - 0.0006 19.5 4.0 0.0032 17.1 0.2 3.2 2 1 0 4 4 4 1 FAD dependent oxidoreductase Shikimate_DH PF01488.20 gi|212224527|ref|YP_002307763.1| - 0.0024 17.9 3.5 4.1 7.5 0.1 3.9 4 0 0 4 4 4 1 Shikimate / quinate 5-dehydrogenase 2-Hacid_dh_C PF02826.19 gi|212224527|ref|YP_002307763.1| - 0.0033 16.8 0.4 1.3 8.3 0.0 2.8 3 0 0 3 3 3 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain XdhC_C PF13478.6 gi|212224527|ref|YP_002307763.1| - 0.0065 17.0 0.0 1.7 9.2 0.0 2.5 2 0 0 2 2 2 1 XdhC Rossmann domain F420_oxidored PF03807.17 gi|212224527|ref|YP_002307763.1| - 0.0071 16.9 2.9 0.5 11.0 0.4 3.7 3 1 0 3 3 3 1 NADP oxidoreductase coenzyme F420-dependent FMO-like PF00743.19 gi|212224527|ref|YP_002307763.1| - 0.012 14.1 0.0 0.065 11.6 0.0 1.9 2 0 0 2 2 2 0 Flavin-binding monooxygenase-like 3HCDH_N PF02737.18 gi|212224527|ref|YP_002307763.1| - 0.013 15.4 0.2 0.53 10.2 0.0 2.3 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Lycopene_cycl PF05834.12 gi|212224527|ref|YP_002307763.1| - 0.018 14.1 0.1 0.04 13.0 0.1 1.6 1 0 0 1 1 1 0 Lycopene cyclase protein NAD_binding_9 PF13454.6 gi|212224527|ref|YP_002307763.1| - 0.24 11.4 3.4 0.54 10.2 0.2 2.8 4 0 0 4 4 3 0 FAD-NAD(P)-binding AdoHcyase_NAD PF00670.21 gi|212224527|ref|YP_002307763.1| - 0.72 9.9 2.7 9.2 6.3 0.2 2.7 3 0 0 3 3 2 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain AAL_decarboxy PF03306.13 gi|212224528|ref|YP_002307764.1| - 0.069 12.5 0.0 0.1 11.9 0.0 1.2 1 0 0 1 1 1 0 Alpha-acetolactate decarboxylase Phage_integrase PF00589.22 gi|212224529|ref|YP_002307765.1| - 4.6e-05 23.3 0.0 0.00012 21.9 0.0 1.7 1 1 0 1 1 1 1 Phage integrase family Phage_int_SAM_4 PF13495.6 gi|212224529|ref|YP_002307765.1| - 0.011 16.1 0.1 0.033 14.6 0.1 1.8 1 0 0 1 1 1 0 Phage integrase, N-terminal SAM-like domain SHOCT PF09851.9 gi|212224529|ref|YP_002307765.1| - 0.017 14.9 0.6 0.61 9.9 0.0 2.7 2 0 0 2 2 2 0 Short C-terminal domain Imm74 PF15603.6 gi|212224530|ref|YP_002307766.1| - 0.0032 17.6 0.4 2.9 8.1 0.1 2.8 2 0 0 2 2 2 2 Immunity protein 74 DUF489 PF04356.12 gi|212224530|ref|YP_002307766.1| - 0.017 15.2 0.7 0.042 13.9 0.7 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF489) IF4E PF01652.18 gi|212224530|ref|YP_002307766.1| - 0.024 14.4 0.0 0.057 13.2 0.0 1.6 1 0 0 1 1 1 0 Eukaryotic initiation factor 4E SBDS_C PF09377.10 gi|212224530|ref|YP_002307766.1| - 0.066 13.2 0.5 0.31 11.1 0.0 2.4 2 1 0 2 2 2 0 SBDS protein C-terminal domain HTH_40 PF14493.6 gi|212224530|ref|YP_002307766.1| - 0.16 12.4 4.0 24 5.4 0.2 4.1 3 1 1 4 4 4 0 Helix-turn-helix domain ING PF12998.7 gi|212224530|ref|YP_002307766.1| - 0.69 10.5 4.3 0.67 10.6 1.2 2.7 2 0 0 2 2 2 0 Inhibitor of growth proteins N-terminal histone-binding DUF2573 PF10835.8 gi|212224530|ref|YP_002307766.1| - 0.84 10.0 3.4 2.6 8.5 0.1 3.5 3 1 1 4 4 4 0 Protein of unknown function (DUF2573) DUF2963 PF11178.8 gi|212224530|ref|YP_002307766.1| - 5.7 6.7 9.2 0.75 9.6 2.1 3.4 2 1 0 2 2 2 0 Protein of unknown function (DUF2963) UvrD_C PF13361.6 gi|212224531|ref|YP_002307767.1| - 6.4e-15 55.4 15.3 4.2e-14 52.7 15.3 2.5 1 1 0 1 1 1 1 UvrD-like helicase C-terminal domain AAA_19 PF13245.6 gi|212224531|ref|YP_002307767.1| - 3.9e-14 53.2 0.2 2.7e-12 47.2 0.0 2.9 3 0 0 3 3 3 1 AAA domain UvrD_C_2 PF13538.6 gi|212224531|ref|YP_002307767.1| - 1.9e-12 46.8 0.0 5.7e-12 45.3 0.0 1.8 2 0 0 2 2 2 1 UvrD-like helicase C-terminal domain Viral_helicase1 PF01443.18 gi|212224531|ref|YP_002307767.1| - 1.2e-11 44.8 0.3 0.00046 20.0 0.2 3.4 2 1 0 3 3 3 3 Viral (Superfamily 1) RNA helicase UvrD-helicase PF00580.21 gi|212224531|ref|YP_002307767.1| - 8.9e-11 41.9 20.6 9.1e-11 41.8 2.7 4.1 2 2 2 4 4 4 2 UvrD/REP helicase N-terminal domain AAA_30 PF13604.6 gi|212224531|ref|YP_002307767.1| - 7.1e-08 32.4 0.0 0.00024 20.9 0.0 2.8 3 0 0 3 3 3 2 AAA domain AAA_12 PF13087.6 gi|212224531|ref|YP_002307767.1| - 0.00022 20.9 4.3 0.00022 20.9 4.3 2.4 2 1 0 2 2 2 1 AAA domain AAA_11 PF13086.6 gi|212224531|ref|YP_002307767.1| - 0.00026 20.9 0.0 0.09 12.6 0.0 2.6 2 0 0 2 2 2 2 AAA domain Streptin-Immun PF11083.8 gi|212224531|ref|YP_002307767.1| - 0.012 16.0 4.5 0.06 13.8 4.5 2.2 1 0 0 1 1 1 0 Lantibiotic streptin immunity protein Phage_TAC_10 PF10963.8 gi|212224531|ref|YP_002307767.1| - 0.13 12.4 3.2 3.4 7.9 0.3 2.8 1 1 1 2 2 2 0 Phage tail assembly chaperone Resolvase PF00239.21 gi|212224532|ref|YP_002307768.1| - 3.8e-21 75.7 0.1 7.2e-21 74.8 0.1 1.5 1 0 0 1 1 1 1 Resolvase, N terminal domain Mannitol_dh PF01232.23 gi|212224532|ref|YP_002307768.1| - 0.015 15.5 0.0 0.023 14.8 0.0 1.3 1 0 0 1 1 1 0 Mannitol dehydrogenase Rossmann domain DUF5338 PF17273.2 gi|212224532|ref|YP_002307768.1| - 0.016 15.2 0.1 0.033 14.2 0.1 1.5 1 0 0 1 1 1 0 Family of unknown function (DUF5338) Phage_int_SAM_4 PF13495.6 gi|212224532|ref|YP_002307768.1| - 0.026 15.0 0.9 1.4 9.4 0.0 2.6 2 1 1 3 3 3 0 Phage integrase, N-terminal SAM-like domain DUF3658 PF12395.8 gi|212224532|ref|YP_002307768.1| - 0.045 13.6 0.3 0.29 11.1 0.1 2.1 2 0 0 2 2 2 0 Protein of unknown function DUF1722 PF08349.11 gi|212224532|ref|YP_002307768.1| - 0.11 12.8 0.1 0.46 10.8 0.1 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF1722) PP28 PF10252.9 gi|212224532|ref|YP_002307768.1| - 0.28 11.6 2.2 0.63 10.5 0.3 2.0 2 0 0 2 2 2 0 Casein kinase substrate phosphoprotein PP28 RE_AccI PF09545.10 gi|212224533|ref|YP_002307769.1| - 8.2e-72 242.2 2.1 1.3e-71 241.6 2.1 1.3 1 1 0 1 1 1 1 AccI restriction endonuclease DUF2017 PF09438.10 gi|212224533|ref|YP_002307769.1| - 0.077 12.9 0.0 0.12 12.2 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF2017) Trigger_N PF05697.13 gi|212224533|ref|YP_002307769.1| - 0.098 13.0 0.1 0.58 10.5 0.0 2.3 3 0 0 3 3 3 0 Bacterial trigger factor protein (TF) SSXT PF05030.12 gi|212224533|ref|YP_002307769.1| - 0.15 11.8 1.0 0.22 11.2 0.1 1.7 2 0 0 2 2 2 0 SSXT protein (N-terminal region) N6_Mtase PF02384.16 gi|212224534|ref|YP_002307770.1| - 1.1e-13 51.1 0.1 1.7e-13 50.5 0.1 1.3 1 0 0 1 1 1 1 N-6 DNA Methylase Eco57I PF07669.11 gi|212224534|ref|YP_002307770.1| - 4e-08 33.7 0.1 1.3e-07 32.1 0.1 1.9 1 0 0 1 1 1 1 Eco57I restriction-modification methylase MTS PF05175.14 gi|212224534|ref|YP_002307770.1| - 2.3e-05 24.0 0.0 6.7e-05 22.5 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase small domain UPF0020 PF01170.18 gi|212224534|ref|YP_002307770.1| - 0.00092 18.9 0.0 0.0018 18.0 0.0 1.5 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Dam PF05869.11 gi|212224534|ref|YP_002307770.1| - 0.0031 17.1 0.0 0.011 15.3 0.0 1.9 1 1 0 1 1 1 1 DNA N-6-adenine-methyltransferase (Dam) DUF1694 PF07997.11 gi|212224534|ref|YP_002307770.1| - 0.017 15.2 0.8 1.4 9.1 0.0 2.9 3 0 0 3 3 3 0 Protein of unknown function (DUF1694) Methyltransf_25 PF13649.6 gi|212224534|ref|YP_002307770.1| - 0.021 15.5 0.0 0.066 13.9 0.0 1.9 1 0 0 1 1 1 0 Methyltransferase domain Cas_Cas6 PF01881.16 gi|212224535|ref|YP_002307771.1| - 2.1e-07 31.6 0.0 4.2e-07 30.6 0.0 1.5 1 0 0 1 1 1 1 CRISPR associated protein Cas6 AAA PF00004.29 gi|212224536|ref|YP_002307772.1| - 1.1e-43 148.8 0.0 2e-43 148.0 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|212224536|ref|YP_002307772.1| - 2.1e-13 49.9 0.2 4.2e-13 48.9 0.2 1.5 1 0 0 1 1 1 1 AAA+ lid domain Prot_ATP_ID_OB PF16450.5 gi|212224536|ref|YP_002307772.1| - 7.7e-12 45.0 0.0 1.7e-11 43.9 0.0 1.5 1 0 0 1 1 1 1 Proteasomal ATPase OB C-terminal domain AAA_2 PF07724.14 gi|212224536|ref|YP_002307772.1| - 1.9e-07 31.4 0.1 2.9e-06 27.5 0.0 2.2 2 0 0 2 2 2 1 AAA domain (Cdc48 subfamily) AAA_16 PF13191.6 gi|212224536|ref|YP_002307772.1| - 2.4e-07 31.3 0.4 0.00022 21.7 0.0 3.2 2 1 0 3 3 3 1 AAA ATPase domain AAA_5 PF07728.14 gi|212224536|ref|YP_002307772.1| - 3.9e-07 30.2 0.2 1.3e-05 25.2 0.1 3.3 2 1 0 2 2 2 1 AAA domain (dynein-related subfamily) Prot_ATP_OB_N PF17758.1 gi|212224536|ref|YP_002307772.1| - 5.1e-07 29.2 0.0 1.5e-06 27.7 0.0 1.7 1 0 0 1 1 1 1 Proteasomal ATPase OB N-terminal domain RuvB_N PF05496.12 gi|212224536|ref|YP_002307772.1| - 9e-07 28.8 0.0 2.3e-06 27.5 0.0 1.7 1 0 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain DUF815 PF05673.13 gi|212224536|ref|YP_002307772.1| - 8.4e-05 21.9 0.0 0.00018 20.8 0.0 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF815) AAA_22 PF13401.6 gi|212224536|ref|YP_002307772.1| - 0.00011 22.4 0.1 0.006 16.9 0.1 2.8 1 1 0 1 1 1 1 AAA domain AAA_28 PF13521.6 gi|212224536|ref|YP_002307772.1| - 0.00051 20.3 0.4 0.001 19.4 0.0 1.7 2 0 0 2 2 1 1 AAA domain RNA_helicase PF00910.22 gi|212224536|ref|YP_002307772.1| - 0.00091 19.6 0.0 0.0017 18.7 0.0 1.4 1 0 0 1 1 1 1 RNA helicase ATPase PF06745.13 gi|212224536|ref|YP_002307772.1| - 0.0016 17.8 0.1 0.064 12.6 0.0 2.6 3 0 0 3 3 3 1 KaiC AAA_14 PF13173.6 gi|212224536|ref|YP_002307772.1| - 0.0017 18.4 0.0 0.0036 17.3 0.0 1.5 1 0 0 1 1 1 1 AAA domain IstB_IS21 PF01695.17 gi|212224536|ref|YP_002307772.1| - 0.0027 17.4 0.0 0.0057 16.4 0.0 1.5 1 0 0 1 1 1 1 IstB-like ATP binding protein TIP49 PF06068.13 gi|212224536|ref|YP_002307772.1| - 0.0034 16.6 0.0 0.0064 15.7 0.0 1.4 1 0 0 1 1 1 1 TIP49 P-loop domain NRBF2 PF08961.10 gi|212224536|ref|YP_002307772.1| - 0.004 16.8 0.4 0.0072 15.9 0.4 1.3 1 0 0 1 1 1 1 Nuclear receptor-binding factor 2, autophagy regulator Mg_chelatase PF01078.21 gi|212224536|ref|YP_002307772.1| - 0.0056 16.1 0.1 0.011 15.1 0.1 1.4 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI TSNAXIP1_N PF15739.5 gi|212224536|ref|YP_002307772.1| - 0.0059 17.0 0.6 0.013 15.9 0.6 1.5 1 0 0 1 1 1 1 Translin-associated factor X-interacting N-terminus AAA_3 PF07726.11 gi|212224536|ref|YP_002307772.1| - 0.006 16.4 0.0 0.012 15.4 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_17 PF13207.6 gi|212224536|ref|YP_002307772.1| - 0.0071 16.8 0.0 0.019 15.4 0.0 1.8 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|212224536|ref|YP_002307772.1| - 0.0086 16.6 0.0 0.026 15.1 0.0 1.8 1 1 0 1 1 1 1 AAA domain CENP-F_leu_zip PF10473.9 gi|212224536|ref|YP_002307772.1| - 0.011 15.7 2.2 0.011 15.7 0.7 1.8 2 0 0 2 2 1 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 ATPase_2 PF01637.18 gi|212224536|ref|YP_002307772.1| - 0.012 15.6 0.2 0.34 10.8 0.0 2.4 2 1 0 3 3 2 0 ATPase domain predominantly from Archaea KAP_NTPase PF07693.14 gi|212224536|ref|YP_002307772.1| - 0.017 14.4 0.0 2.2 7.4 0.0 2.5 3 0 0 3 3 3 0 KAP family P-loop domain AAA_25 PF13481.6 gi|212224536|ref|YP_002307772.1| - 0.02 14.5 0.7 0.092 12.3 0.0 2.3 3 0 0 3 3 3 0 AAA domain Sigma54_activ_2 PF14532.6 gi|212224536|ref|YP_002307772.1| - 0.026 14.6 0.0 0.11 12.7 0.0 2.0 1 1 0 1 1 1 0 Sigma-54 interaction domain Zeta_toxin PF06414.12 gi|212224536|ref|YP_002307772.1| - 0.027 13.8 0.0 0.05 12.9 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin Lebercilin PF15619.6 gi|212224536|ref|YP_002307772.1| - 0.029 14.1 2.7 0.52 10.0 0.5 2.4 2 0 0 2 2 2 0 Ciliary protein causing Leber congenital amaurosis disease AAA_33 PF13671.6 gi|212224536|ref|YP_002307772.1| - 0.03 14.5 0.0 0.087 13.0 0.0 1.9 2 0 0 2 2 1 0 AAA domain Rad17 PF03215.15 gi|212224536|ref|YP_002307772.1| - 0.034 14.1 0.0 0.072 13.0 0.0 1.5 1 0 0 1 1 1 0 Rad17 P-loop domain Parvo_NS1 PF01057.17 gi|212224536|ref|YP_002307772.1| - 0.035 13.2 0.0 0.059 12.5 0.0 1.3 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 ABC_tran PF00005.27 gi|212224536|ref|YP_002307772.1| - 0.037 14.5 0.1 0.13 12.7 0.0 1.9 2 0 0 2 2 1 0 ABC transporter TsaE PF02367.17 gi|212224536|ref|YP_002307772.1| - 0.042 13.9 0.0 0.076 13.0 0.0 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_24 PF13479.6 gi|212224536|ref|YP_002307772.1| - 0.044 13.5 0.1 0.09 12.5 0.1 1.5 1 1 0 1 1 1 0 AAA domain AAA_7 PF12775.7 gi|212224536|ref|YP_002307772.1| - 0.046 13.2 0.0 0.11 12.0 0.0 1.6 1 0 0 1 1 1 0 P-loop containing dynein motor region HALZ PF02183.18 gi|212224536|ref|YP_002307772.1| - 0.057 13.6 4.2 0.15 12.3 1.1 2.7 2 0 0 2 2 2 0 Homeobox associated leucine zipper Sigma54_activat PF00158.26 gi|212224536|ref|YP_002307772.1| - 0.071 12.8 0.0 0.67 9.6 0.0 2.5 3 0 0 3 3 3 0 Sigma-54 interaction domain Prefoldin_2 PF01920.20 gi|212224536|ref|YP_002307772.1| - 0.078 12.9 3.8 0.16 11.9 1.8 2.5 3 0 0 3 3 2 0 Prefoldin subunit NACHT PF05729.12 gi|212224536|ref|YP_002307772.1| - 0.087 12.7 0.0 0.3 11.0 0.0 1.8 2 0 0 2 2 2 0 NACHT domain ZapB PF06005.12 gi|212224536|ref|YP_002307772.1| - 0.094 13.2 0.4 0.094 13.2 0.4 2.1 3 0 0 3 3 1 0 Cell division protein ZapB AAA_30 PF13604.6 gi|212224536|ref|YP_002307772.1| - 0.14 11.9 0.0 0.45 10.2 0.0 1.9 1 1 0 1 1 1 0 AAA domain Tho2 PF11262.8 gi|212224536|ref|YP_002307772.1| - 0.14 11.3 0.1 0.21 10.8 0.1 1.2 1 0 0 1 1 1 0 Transcription factor/nuclear export subunit protein 2 LURAP PF14854.6 gi|212224536|ref|YP_002307772.1| - 0.24 11.4 0.8 0.81 9.7 0.3 2.1 2 0 0 2 2 2 0 Leucine rich adaptor protein TMF_DNA_bd PF12329.8 gi|212224536|ref|YP_002307772.1| - 0.71 9.9 3.6 0.61 10.1 1.3 2.1 2 0 0 2 2 1 0 TATA element modulatory factor 1 DNA binding Prefoldin PF02996.17 gi|212224536|ref|YP_002307772.1| - 5.5 6.9 7.1 0.4 10.6 1.2 2.1 3 0 0 3 3 1 0 Prefoldin subunit APG6_N PF17675.1 gi|212224536|ref|YP_002307772.1| - 9.2 6.8 8.4 0.22 12.1 0.6 2.3 4 0 0 4 4 1 0 Apg6 coiled-coil region MFS_1 PF07690.16 gi|212224537|ref|YP_002307773.1| - 2.1e-55 188.1 75.9 9.3e-45 153.1 41.5 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|212224537|ref|YP_002307773.1| - 4.6e-14 52.1 28.1 6.3e-09 35.2 6.4 3.5 1 1 0 3 3 3 3 Sugar (and other) transporter DUF2062 PF09835.9 gi|212224537|ref|YP_002307773.1| - 0.0043 16.9 4.1 0.0043 16.9 4.1 2.9 2 1 0 2 2 2 1 Uncharacterized protein conserved in bacteria (DUF2062) MFS_1_like PF12832.7 gi|212224537|ref|YP_002307773.1| - 1.3 7.8 26.0 2.5e+02 0.3 26.0 2.5 1 1 0 1 1 1 0 MFS_1 like family DUF4091 PF13320.6 gi|212224538|ref|YP_002307774.1| - 0.12 12.5 0.0 0.34 11.1 0.0 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4091) RIO1 PF01163.22 gi|212224539|ref|YP_002307775.1| - 1.6e-47 161.6 0.0 2e-47 161.2 0.0 1.1 1 0 0 1 1 1 1 RIO1 family Rio2_N PF09202.11 gi|212224539|ref|YP_002307775.1| - 1.9e-23 82.5 0.0 4.4e-23 81.3 0.0 1.6 1 0 0 1 1 1 1 Rio2, N-terminal APH PF01636.23 gi|212224539|ref|YP_002307775.1| - 2.3e-08 34.3 1.3 1.9e-05 24.7 0.2 2.8 2 1 1 3 3 3 2 Phosphotransferase enzyme family Pkinase PF00069.25 gi|212224539|ref|YP_002307775.1| - 1.4e-06 27.9 1.1 5.3e-06 26.0 1.1 1.7 1 1 0 1 1 1 1 Protein kinase domain TPR_2 PF07719.17 gi|212224540|ref|YP_002307776.1| - 0.006 16.6 0.2 1.6 9.0 0.0 3.2 2 0 0 2 2 2 1 Tetratricopeptide repeat TPR_7 PF13176.6 gi|212224540|ref|YP_002307776.1| - 0.03 14.3 0.5 3.2 8.0 0.0 3.4 4 0 0 4 4 4 0 Tetratricopeptide repeat TPR_8 PF13181.6 gi|212224540|ref|YP_002307776.1| - 0.035 14.3 0.2 4.1 7.9 0.0 3.3 3 1 1 4 4 4 0 Tetratricopeptide repeat TPR_21 PF09976.9 gi|212224540|ref|YP_002307776.1| - 0.063 13.0 0.0 0.095 12.4 0.0 1.3 1 0 0 1 1 1 0 Tetratricopeptide repeat-like domain Acetyltransf_6 PF13480.7 gi|212224540|ref|YP_002307776.1| - 0.069 13.3 0.7 0.13 12.4 0.1 1.7 2 0 0 2 2 2 0 Acetyltransferase (GNAT) domain Radical_SAM PF04055.21 gi|212224541|ref|YP_002307777.1| - 5.8e-13 49.6 0.2 5.8e-12 46.3 0.0 2.0 2 0 0 2 2 2 1 Radical SAM superfamily MFS_1 PF07690.16 gi|212224542|ref|YP_002307778.1| - 2.7e-44 151.5 50.3 3.2e-40 138.1 39.4 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.7 gi|212224542|ref|YP_002307778.1| - 1.4e-09 37.4 24.6 6.5e-06 25.3 5.7 3.2 1 1 2 3 3 3 3 MFS_1 like family MFS_3 PF05977.13 gi|212224542|ref|YP_002307778.1| - 1.4e-08 33.6 18.6 2e-08 33.1 18.6 1.2 1 0 0 1 1 1 1 Transmembrane secretion effector PUCC PF03209.15 gi|212224542|ref|YP_002307778.1| - 3.3e-05 23.1 12.1 3.3e-05 23.1 12.1 2.2 1 1 1 2 2 2 1 PUCC protein DUF3270 PF11674.8 gi|212224542|ref|YP_002307778.1| - 0.16 12.2 0.2 0.16 12.2 0.2 3.0 5 0 0 5 5 5 0 Protein of unknown function (DUF3270) Sugar_tr PF00083.24 gi|212224542|ref|YP_002307778.1| - 2.5 6.9 31.3 0.35 9.7 17.4 3.0 1 1 0 2 2 2 0 Sugar (and other) transporter Asparaginase_2 PF01112.18 gi|212224543|ref|YP_002307779.1| - 6.3e-93 311.2 3.0 7.6e-93 310.9 3.0 1.0 1 0 0 1 1 1 1 Asparaginase PhoU PF01895.19 gi|212224544|ref|YP_002307780.1| - 4.2e-15 56.0 13.1 4.8e-14 52.6 2.2 2.8 3 0 0 3 3 3 2 PhoU domain MazE_antitoxin PF04014.18 gi|212224544|ref|YP_002307780.1| - 4.1e-08 33.0 0.3 1.4e-07 31.2 0.0 2.1 2 0 0 2 2 2 1 Antidote-toxin recognition MazE, bacterial antitoxin Baculo_PEP_C PF04513.12 gi|212224544|ref|YP_002307780.1| - 0.16 12.0 0.3 3.2 7.8 0.1 2.1 2 0 0 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus MFS_1 PF07690.16 gi|212224545|ref|YP_002307781.1| - 4.2e-20 72.0 48.8 1.6e-12 47.0 14.7 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.7 gi|212224545|ref|YP_002307781.1| - 7.9e-07 28.3 30.2 6.7e-06 25.2 16.4 2.3 2 1 0 2 2 2 2 MFS_1 like family POR PF01558.18 gi|212224546|ref|YP_002307782.1| - 3.1e-34 118.6 0.1 3.6e-34 118.4 0.1 1.0 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase Methyltransf_25 PF13649.6 gi|212224547|ref|YP_002307783.1| - 4e-25 88.3 0.0 6.4e-25 87.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|212224547|ref|YP_002307783.1| - 2e-23 82.9 0.0 3e-23 82.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|212224547|ref|YP_002307783.1| - 2.1e-17 63.3 0.0 2.6e-17 63.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|212224547|ref|YP_002307783.1| - 2.3e-17 63.1 0.0 3.7e-17 62.4 0.0 1.3 1 1 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.12 gi|212224547|ref|YP_002307783.1| - 1.4e-13 51.4 0.0 2.3e-13 50.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|212224547|ref|YP_002307783.1| - 1.7e-13 50.7 0.0 2.2e-13 50.4 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain TehB PF03848.14 gi|212224547|ref|YP_002307783.1| - 2.8e-07 30.1 0.0 4e-07 29.7 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB MTS PF05175.14 gi|212224547|ref|YP_002307783.1| - 3.5e-07 29.9 0.0 5.3e-07 29.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_29 PF03141.16 gi|212224547|ref|YP_002307783.1| - 0.00019 20.2 0.0 0.00025 19.8 0.0 1.2 1 0 0 1 1 1 1 Putative S-adenosyl-L-methionine-dependent methyltransferase CMAS PF02353.20 gi|212224547|ref|YP_002307783.1| - 0.00022 20.6 0.0 0.00025 20.4 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase MetW PF07021.12 gi|212224547|ref|YP_002307783.1| - 0.00054 19.6 0.0 0.00068 19.3 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW FtsJ PF01728.19 gi|212224547|ref|YP_002307783.1| - 0.00091 19.4 0.0 0.0067 16.6 0.0 2.0 1 1 0 1 1 1 1 FtsJ-like methyltransferase Methyltransf_8 PF05148.15 gi|212224547|ref|YP_002307783.1| - 0.0013 18.6 0.0 0.0048 16.8 0.0 2.1 2 1 0 2 2 2 1 Hypothetical methyltransferase Methyltransf_32 PF13679.6 gi|212224547|ref|YP_002307783.1| - 0.0031 17.5 0.0 0.0045 17.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_5 PF01795.19 gi|212224547|ref|YP_002307783.1| - 0.019 14.5 0.0 0.069 12.6 0.0 1.8 1 1 1 2 2 2 0 MraW methylase family CheR PF01739.18 gi|212224547|ref|YP_002307783.1| - 0.023 14.2 0.1 0.91 9.0 0.1 2.3 1 1 1 2 2 2 0 CheR methyltransferase, SAM binding domain Methyltransf_15 PF09445.10 gi|212224547|ref|YP_002307783.1| - 0.023 14.3 0.0 0.048 13.2 0.0 1.6 1 1 1 2 2 2 0 RNA cap guanine-N2 methyltransferase tRNA_U5-meth_tr PF05958.11 gi|212224547|ref|YP_002307783.1| - 0.025 13.6 0.0 0.21 10.5 0.0 2.0 2 0 0 2 2 2 0 tRNA (Uracil-5-)-methyltransferase RrnaAD PF00398.20 gi|212224547|ref|YP_002307783.1| - 0.055 12.5 0.0 0.36 9.9 0.0 1.9 1 1 0 2 2 2 0 Ribosomal RNA adenine dimethylase tRNA-synt_1f PF01921.18 gi|212224548|ref|YP_002307784.1| - 4.7e-138 460.0 1.8 5.4e-138 459.8 0.5 1.6 2 0 0 2 2 2 1 tRNA synthetases class I (K) tRNA-synt_1e PF01406.19 gi|212224548|ref|YP_002307784.1| - 1.8e-06 27.5 0.0 0.78 9.0 0.0 3.1 3 0 0 3 3 3 3 tRNA synthetases class I (C) catalytic domain tRNA-synt_1g PF09334.11 gi|212224548|ref|YP_002307784.1| - 1.3e-05 24.1 2.3 0.012 14.4 0.0 3.6 3 1 0 3 3 3 1 tRNA synthetases class I (M) HypA PF01155.19 gi|212224548|ref|YP_002307784.1| - 0.00066 19.7 0.0 0.0014 18.6 0.0 1.6 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA tRNA-synt_1b PF00579.25 gi|212224548|ref|YP_002307784.1| - 0.0016 17.9 0.0 0.099 11.9 0.0 2.2 2 0 0 2 2 2 1 tRNA synthetases class I (W and Y) zf-LITAF-like PF10601.9 gi|212224548|ref|YP_002307784.1| - 0.0088 16.3 0.2 1.7 8.9 0.0 2.2 2 0 0 2 2 2 1 LITAF-like zinc ribbon domain zinc_ribbon_10 PF10058.9 gi|212224548|ref|YP_002307784.1| - 0.027 14.2 0.4 0.053 13.3 0.4 1.4 1 0 0 1 1 1 0 Predicted integral membrane zinc-ribbon metal-binding protein Cys_rich_KTR PF14205.6 gi|212224548|ref|YP_002307784.1| - 0.042 13.6 0.4 0.9 9.4 0.1 2.3 2 0 0 2 2 2 0 Cysteine-rich KTR zinc_ribbon_2 PF13240.6 gi|212224548|ref|YP_002307784.1| - 0.069 12.9 3.5 4 7.3 0.7 2.6 2 0 0 2 2 2 0 zinc-ribbon domain Lar_restr_allev PF14354.6 gi|212224548|ref|YP_002307784.1| - 0.072 13.5 2.8 0.71 10.3 0.2 2.4 1 1 1 2 2 2 0 Restriction alleviation protein Lar PhoD PF09423.10 gi|212224548|ref|YP_002307784.1| - 0.078 12.0 1.1 1.4 7.9 0.3 2.1 2 0 0 2 2 2 0 PhoD-like phosphatase Phage_connect_1 PF05135.13 gi|212224548|ref|YP_002307784.1| - 0.096 13.2 0.1 0.2 12.2 0.1 1.5 1 0 0 1 1 1 0 Phage gp6-like head-tail connector protein Zn-ribbon_8 PF09723.10 gi|212224548|ref|YP_002307784.1| - 0.13 12.4 1.7 0.35 11.0 1.7 1.8 1 1 0 1 1 1 0 Zinc ribbon domain Zn_ribbon_SprT PF17283.2 gi|212224548|ref|YP_002307784.1| - 1.1 9.2 3.8 6.4 6.8 3.8 2.1 1 1 0 1 1 1 0 SprT-like zinc ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|212224548|ref|YP_002307784.1| - 1.3 9.0 6.3 1.5 8.8 0.7 2.3 1 1 1 2 2 2 0 Transposase zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|212224548|ref|YP_002307784.1| - 1.7 8.2 5.9 4.1 6.9 0.3 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Phage_holin_4_1 PF05105.12 gi|212224550|ref|YP_002307786.1| - 0.03 14.5 0.6 0.069 13.3 0.6 1.6 1 0 0 1 1 1 0 Bacteriophage holin family B12D PF06522.11 gi|212224550|ref|YP_002307786.1| - 0.13 12.1 0.0 15 5.5 0.0 2.5 2 0 0 2 2 2 0 NADH-ubiquinone reductase complex 1 MLRQ subunit DUF366 PF04017.12 gi|212224551|ref|YP_002307787.1| - 7.9e-69 230.8 1.0 8.6e-69 230.7 1.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF366) BPL_LplA_LipB PF03099.19 gi|212224551|ref|YP_002307787.1| - 0.029 14.3 0.1 0.048 13.6 0.1 1.3 1 0 0 1 1 1 0 Biotin/lipoate A/B protein ligase family DUF4283 PF14111.6 gi|212224552|ref|YP_002307788.1| - 0.036 13.6 0.0 0.036 13.6 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4283) Pribosyltran_N PF13793.6 gi|212224554|ref|YP_002307790.1| - 8.6e-24 83.7 0.0 1.3e-20 73.5 0.0 2.2 2 0 0 2 2 2 2 N-terminal domain of ribose phosphate pyrophosphokinase Pribosyltran PF00156.27 gi|212224554|ref|YP_002307790.1| - 4.1e-18 65.4 0.1 4.3e-17 62.1 0.1 2.2 2 0 0 2 2 2 1 Phosphoribosyl transferase domain Pribosyl_synth PF14572.6 gi|212224554|ref|YP_002307790.1| - 1.5e-16 61.0 1.1 4.4e-16 59.5 0.6 1.8 1 1 1 2 2 2 1 Phosphoribosyl synthetase-associated domain UPRTase PF14681.6 gi|212224554|ref|YP_002307790.1| - 1.5e-06 27.8 0.1 3e-06 26.8 0.0 1.4 2 0 0 2 2 2 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.6 gi|212224554|ref|YP_002307790.1| - 0.013 15.0 0.0 0.019 14.5 0.0 1.2 1 0 0 1 1 1 0 Phosphoribosyl transferase DUF1614 PF07758.11 gi|212224555|ref|YP_002307791.1| - 2.4e-57 193.7 8.4 2.4e-57 193.7 8.4 1.8 2 0 0 2 2 2 1 Protein of unknown function (DUF1614) PHO4 PF01384.20 gi|212224555|ref|YP_002307791.1| - 0.11 11.5 3.5 0.15 11.1 3.5 1.2 1 0 0 1 1 1 0 Phosphate transporter family ASCH PF04266.14 gi|212224556|ref|YP_002307792.1| - 2.3e-11 44.2 0.0 3.3e-11 43.7 0.0 1.2 1 0 0 1 1 1 1 ASCH domain Sdh5 PF03937.16 gi|212224556|ref|YP_002307792.1| - 0.14 12.1 0.0 0.2 11.6 0.0 1.2 1 0 0 1 1 1 0 Flavinator of succinate dehydrogenase Lactamase_B_3 PF13483.6 gi|212224557|ref|YP_002307793.1| - 4.1e-29 101.6 0.2 5e-29 101.3 0.2 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.7 gi|212224557|ref|YP_002307793.1| - 2e-20 73.2 0.1 2.9e-20 72.6 0.1 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|212224557|ref|YP_002307793.1| - 7.7e-12 45.6 0.9 1.1e-11 45.1 0.9 1.2 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Rad51 PF08423.11 gi|212224558|ref|YP_002307794.1| - 1.9e-31 109.2 0.0 2.5e-31 108.8 0.0 1.2 1 0 0 1 1 1 1 Rad51 ATPase PF06745.13 gi|212224558|ref|YP_002307794.1| - 6.3e-12 45.3 0.1 1.2e-11 44.4 0.1 1.4 1 1 0 1 1 1 1 KaiC AAA_25 PF13481.6 gi|212224558|ref|YP_002307794.1| - 3.6e-08 33.2 0.1 2.6e-07 30.4 0.1 1.9 1 1 0 1 1 1 1 AAA domain RecA PF00154.21 gi|212224558|ref|YP_002307794.1| - 2.4e-07 30.5 0.0 3.1e-07 30.2 0.0 1.2 1 0 0 1 1 1 1 recA bacterial DNA recombination protein AAA_24 PF13479.6 gi|212224558|ref|YP_002307794.1| - 1e-06 28.6 0.0 1.4e-06 28.1 0.0 1.2 1 0 0 1 1 1 1 AAA domain DnaB_C PF03796.15 gi|212224558|ref|YP_002307794.1| - 2.4e-05 23.8 1.3 0.017 14.4 0.2 2.1 1 1 0 2 2 2 2 DnaB-like helicase C terminal domain AAA_18 PF13238.6 gi|212224558|ref|YP_002307794.1| - 0.01 16.4 0.0 0.019 15.5 0.0 1.5 1 1 0 1 1 1 0 AAA domain PAXNEB PF05625.11 gi|212224558|ref|YP_002307794.1| - 0.092 11.9 0.1 0.14 11.3 0.1 1.2 1 0 0 1 1 1 0 PAXNEB protein DUF402 PF04167.13 gi|212224559|ref|YP_002307795.1| - 1.9e-13 50.4 5.1 1.9e-13 50.4 5.1 2.6 3 0 0 3 3 3 1 Protein of unknown function (DUF402) RNase_E_G PF10150.9 gi|212224559|ref|YP_002307795.1| - 1.7e-12 47.3 0.0 2.9e-12 46.6 0.0 1.3 1 0 0 1 1 1 1 Ribonuclease E/G family OB_RNB PF08206.11 gi|212224559|ref|YP_002307795.1| - 0.027 14.2 0.1 0.071 12.8 0.1 1.7 1 0 0 1 1 1 0 Ribonuclease B OB domain Radical_SAM PF04055.21 gi|212224561|ref|YP_002307797.1| - 1.3e-31 110.3 0.0 2.1e-31 109.5 0.0 1.4 1 0 0 1 1 1 1 Radical SAM superfamily Mob_synth_C PF06463.13 gi|212224561|ref|YP_002307797.1| - 8.8e-23 80.6 0.2 1.3e-22 80.1 0.2 1.3 1 0 0 1 1 1 1 Molybdenum Cofactor Synthesis C Fer4_12 PF13353.6 gi|212224561|ref|YP_002307797.1| - 3.2e-09 37.2 0.0 6.3e-09 36.2 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|212224561|ref|YP_002307797.1| - 3.3e-05 24.0 0.0 6.4e-05 23.1 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain DUF835 PF05763.12 gi|212224562|ref|YP_002307798.1| - 1.2e-37 128.6 0.1 1.8e-37 128.1 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF835) CobD_Cbib PF03186.13 gi|212224562|ref|YP_002307798.1| - 0.016 14.4 0.4 0.025 13.8 0.4 1.2 1 0 0 1 1 1 0 CobD/Cbib protein Zip PF02535.22 gi|212224562|ref|YP_002307798.1| - 0.29 10.3 2.0 0.28 10.3 0.2 1.7 2 0 0 2 2 2 0 ZIP Zinc transporter Met_10 PF02475.16 gi|212224563|ref|YP_002307799.1| - 1.8e-36 125.8 0.0 2.6e-36 125.3 0.0 1.2 1 0 0 1 1 1 1 Met-10+ like-protein Trm5_N PF18093.1 gi|212224563|ref|YP_002307799.1| - 5.3e-11 42.2 3.6 5.3e-11 42.2 3.6 2.6 3 0 0 3 3 3 1 tRNA methyltransferase 5 N-terminal domain Peptidase_C4 PF00863.19 gi|212224563|ref|YP_002307799.1| - 0.0055 16.0 0.0 0.0083 15.5 0.0 1.2 1 0 0 1 1 1 1 Peptidase family C4 Methyltransf_3 PF01596.17 gi|212224563|ref|YP_002307799.1| - 0.03 13.5 0.0 0.05 12.8 0.0 1.3 1 0 0 1 1 1 0 O-methyltransferase DUF3873 PF12989.7 gi|212224563|ref|YP_002307799.1| - 0.16 12.4 0.4 0.33 11.3 0.4 1.6 1 0 0 1 1 1 0 Domain of unknown function, B. Theta Gene description (DUF3873) AAA PF00004.29 gi|212224564|ref|YP_002307800.1| - 2e-14 54.1 0.0 8.9e-14 52.0 0.0 2.2 2 0 0 2 2 1 1 ATPase family associated with various cellular activities (AAA) Rad17 PF03215.15 gi|212224564|ref|YP_002307800.1| - 1.7e-12 47.6 0.0 1.1e-11 45.0 0.0 2.3 2 0 0 2 2 2 1 Rad17 P-loop domain AAA_14 PF13173.6 gi|212224564|ref|YP_002307800.1| - 8e-07 29.2 1.6 1.1e-06 28.7 0.1 2.1 2 0 0 2 2 2 1 AAA domain DUF815 PF05673.13 gi|212224564|ref|YP_002307800.1| - 1.8e-06 27.3 0.0 0.00019 20.7 0.0 2.6 2 0 0 2 2 2 1 Protein of unknown function (DUF815) RuvB_N PF05496.12 gi|212224564|ref|YP_002307800.1| - 7.1e-06 25.8 0.0 2e-05 24.4 0.0 1.8 1 0 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_11 PF13086.6 gi|212224564|ref|YP_002307800.1| - 1.9e-05 24.6 5.0 0.057 13.2 0.0 2.4 2 0 0 2 2 2 2 AAA domain Zeta_toxin PF06414.12 gi|212224564|ref|YP_002307800.1| - 2e-05 24.0 0.7 0.00016 21.0 0.0 2.4 2 0 0 2 2 2 1 Zeta toxin AAA_5 PF07728.14 gi|212224564|ref|YP_002307800.1| - 4.9e-05 23.4 0.0 0.00086 19.3 0.0 2.6 2 1 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_22 PF13401.6 gi|212224564|ref|YP_002307800.1| - 5e-05 23.6 1.0 0.015 15.6 0.1 3.7 2 1 1 4 4 3 1 AAA domain AAA_16 PF13191.6 gi|212224564|ref|YP_002307800.1| - 0.00015 22.2 1.5 0.001 19.5 0.7 2.7 2 1 0 2 2 1 1 AAA ATPase domain DNA_pol3_delta PF06144.13 gi|212224564|ref|YP_002307800.1| - 0.00039 20.2 0.8 0.0063 16.3 0.1 2.9 2 1 0 2 2 2 1 DNA polymerase III, delta subunit AAA_6 PF12774.7 gi|212224564|ref|YP_002307800.1| - 0.0011 18.1 0.3 0.0026 16.8 0.0 1.7 2 0 0 2 2 2 1 Hydrolytic ATP binding site of dynein motor region AAA_25 PF13481.6 gi|212224564|ref|YP_002307800.1| - 0.0022 17.6 0.0 0.0091 15.6 0.0 2.1 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|212224564|ref|YP_002307800.1| - 0.0033 18.0 0.0 0.019 15.5 0.0 2.4 1 1 0 1 1 1 1 AAA domain AAA_28 PF13521.6 gi|212224564|ref|YP_002307800.1| - 0.0034 17.7 0.0 0.0034 17.7 0.0 2.6 3 0 0 3 3 2 1 AAA domain AAA_30 PF13604.6 gi|212224564|ref|YP_002307800.1| - 0.0041 16.9 0.0 0.011 15.5 0.0 1.7 1 0 0 1 1 1 1 AAA domain AAA_assoc_2 PF16193.5 gi|212224564|ref|YP_002307800.1| - 0.0042 17.4 0.1 0.0042 17.4 0.1 2.5 2 1 0 2 2 2 1 AAA C-terminal domain AAA_33 PF13671.6 gi|212224564|ref|YP_002307800.1| - 0.0052 17.0 0.0 0.014 15.5 0.0 1.8 1 1 0 1 1 1 1 AAA domain ATPase PF06745.13 gi|212224564|ref|YP_002307800.1| - 0.0061 15.9 0.1 0.0061 15.9 0.1 2.6 2 2 0 2 2 1 1 KaiC T2SSE PF00437.20 gi|212224564|ref|YP_002307800.1| - 0.0087 15.1 0.0 0.028 13.5 0.0 1.8 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_7 PF12775.7 gi|212224564|ref|YP_002307800.1| - 0.0089 15.6 0.0 0.021 14.4 0.0 1.6 1 0 0 1 1 1 1 P-loop containing dynein motor region AAA_17 PF13207.6 gi|212224564|ref|YP_002307800.1| - 0.012 16.0 0.1 0.012 16.0 0.1 3.3 2 2 1 3 3 2 0 AAA domain AAA_24 PF13479.6 gi|212224564|ref|YP_002307800.1| - 0.013 15.3 0.5 0.043 13.5 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_19 PF13245.6 gi|212224564|ref|YP_002307800.1| - 0.021 15.1 0.8 0.021 15.1 0.8 2.7 2 2 0 2 2 2 0 AAA domain TsaE PF02367.17 gi|212224564|ref|YP_002307800.1| - 0.039 14.0 0.8 0.069 13.1 0.0 1.8 2 0 0 2 2 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE Viral_helicase1 PF01443.18 gi|212224564|ref|YP_002307800.1| - 0.059 13.1 0.0 0.36 10.5 0.0 2.0 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase IPT PF01745.16 gi|212224564|ref|YP_002307800.1| - 0.061 12.7 0.0 0.76 9.1 0.0 2.2 2 0 0 2 2 2 0 Isopentenyl transferase PPV_E1_C PF00519.17 gi|212224564|ref|YP_002307800.1| - 0.069 12.0 0.0 0.15 10.9 0.0 1.5 1 0 0 1 1 1 0 Papillomavirus helicase ResIII PF04851.15 gi|212224564|ref|YP_002307800.1| - 0.07 13.1 2.8 0.12 12.4 0.0 2.5 2 1 1 3 3 3 0 Type III restriction enzyme, res subunit Hydin_ADK PF17213.3 gi|212224564|ref|YP_002307800.1| - 0.071 13.4 8.2 0.5 10.6 0.0 2.4 2 0 0 2 2 2 0 Hydin Adenylate kinase-like domain HrcA_DNA-bdg PF03444.15 gi|212224564|ref|YP_002307800.1| - 0.08 12.6 0.2 0.39 10.4 0.2 2.2 2 0 0 2 2 1 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding UvrD-helicase PF00580.21 gi|212224564|ref|YP_002307800.1| - 0.21 11.1 8.2 0.8 9.2 0.0 3.0 3 0 0 3 3 3 0 UvrD/REP helicase N-terminal domain ABC_tran PF00005.27 gi|212224564|ref|YP_002307800.1| - 0.58 10.7 5.0 1 9.9 0.0 2.7 2 1 0 2 2 2 0 ABC transporter PIN_9 PF18477.1 gi|212224564|ref|YP_002307800.1| - 0.66 10.3 0.1 0.66 10.3 0.1 3.1 3 1 0 3 3 2 0 PIN like domain Arg_decarbox_C PF17944.1 gi|212224564|ref|YP_002307800.1| - 0.85 10.2 4.3 3.3 8.3 0.0 3.3 3 1 0 3 3 2 0 Arginine decarboxylase C-terminal helical extension Rep_fac_C PF08542.11 gi|212224565|ref|YP_002307801.1| - 9e-23 80.5 0.1 1.9e-22 79.5 0.1 1.6 1 0 0 1 1 1 1 Replication factor C C-terminal domain AAA PF00004.29 gi|212224565|ref|YP_002307801.1| - 1e-18 68.0 0.0 2.4e-18 66.8 0.0 1.6 2 0 0 2 2 1 1 ATPase family associated with various cellular activities (AAA) DNA_pol3_delta2 PF13177.6 gi|212224565|ref|YP_002307801.1| - 2.1e-17 63.4 0.0 3.6e-11 43.1 0.1 2.3 1 1 1 2 2 2 2 DNA polymerase III, delta subunit RuvB_N PF05496.12 gi|212224565|ref|YP_002307801.1| - 9.5e-11 41.7 0.1 2.1e-08 34.1 0.0 3.0 3 0 0 3 3 3 1 Holliday junction DNA helicase RuvB P-loop domain AAA_16 PF13191.6 gi|212224565|ref|YP_002307801.1| - 5.1e-08 33.5 0.6 1.5e-05 25.5 0.0 2.6 2 1 1 3 3 3 1 AAA ATPase domain Rad17 PF03215.15 gi|212224565|ref|YP_002307801.1| - 1e-07 32.1 0.0 4e-07 30.2 0.0 1.8 2 1 0 2 2 1 1 Rad17 P-loop domain AAA_14 PF13173.6 gi|212224565|ref|YP_002307801.1| - 7.5e-07 29.2 0.0 1.4e-06 28.4 0.0 1.5 1 0 0 1 1 1 1 AAA domain DNA_pol3_delta PF06144.13 gi|212224565|ref|YP_002307801.1| - 1.8e-06 27.9 0.0 3.8e-06 26.8 0.0 1.5 1 0 0 1 1 1 1 DNA polymerase III, delta subunit Mg_chelatase PF01078.21 gi|212224565|ref|YP_002307801.1| - 2.5e-06 27.0 0.1 0.0021 17.5 0.0 2.3 1 1 1 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_assoc_2 PF16193.5 gi|212224565|ref|YP_002307801.1| - 1.9e-05 24.9 0.7 5.9e-05 23.3 0.7 2.0 1 1 0 1 1 1 1 AAA C-terminal domain AAA_22 PF13401.6 gi|212224565|ref|YP_002307801.1| - 2.4e-05 24.6 0.1 0.13 12.5 0.0 2.5 1 1 1 2 2 2 2 AAA domain AAA_3 PF07726.11 gi|212224565|ref|YP_002307801.1| - 3.4e-05 23.7 0.0 6.6e-05 22.8 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_18 PF13238.6 gi|212224565|ref|YP_002307801.1| - 4.2e-05 24.1 0.0 0.0002 21.9 0.0 2.2 1 1 1 2 2 2 1 AAA domain ResIII PF04851.15 gi|212224565|ref|YP_002307801.1| - 5.8e-05 23.2 0.0 0.0022 18.0 0.0 2.4 2 1 1 3 3 2 1 Type III restriction enzyme, res subunit AAA_25 PF13481.6 gi|212224565|ref|YP_002307801.1| - 0.00063 19.4 0.1 0.0041 16.7 0.0 2.2 2 1 1 3 3 3 1 AAA domain AAA_24 PF13479.6 gi|212224565|ref|YP_002307801.1| - 0.0013 18.5 0.0 0.0027 17.4 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_5 PF07728.14 gi|212224565|ref|YP_002307801.1| - 0.0015 18.6 0.0 0.0081 16.2 0.0 2.2 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) IstB_IS21 PF01695.17 gi|212224565|ref|YP_002307801.1| - 0.0023 17.7 0.0 0.0058 16.4 0.0 1.7 2 0 0 2 2 2 1 IstB-like ATP binding protein TIP49 PF06068.13 gi|212224565|ref|YP_002307801.1| - 0.0024 17.1 0.0 0.0066 15.7 0.0 1.8 2 1 0 2 2 2 1 TIP49 P-loop domain AAA_33 PF13671.6 gi|212224565|ref|YP_002307801.1| - 0.0055 16.9 0.0 0.015 15.4 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA_2 PF07724.14 gi|212224565|ref|YP_002307801.1| - 0.0059 16.7 0.0 0.013 15.7 0.0 1.6 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) AAA_7 PF12775.7 gi|212224565|ref|YP_002307801.1| - 0.016 14.7 0.0 0.027 14.0 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region Sigma54_activat PF00158.26 gi|212224565|ref|YP_002307801.1| - 0.02 14.6 0.0 2.3 7.9 0.0 2.3 2 0 0 2 2 2 0 Sigma-54 interaction domain MeaB PF03308.16 gi|212224565|ref|YP_002307801.1| - 0.022 13.8 0.2 1.3 7.9 0.0 2.3 1 1 1 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB RNA_helicase PF00910.22 gi|212224565|ref|YP_002307801.1| - 0.033 14.6 0.0 0.075 13.4 0.0 1.6 2 0 0 2 2 1 0 RNA helicase Viral_helicase1 PF01443.18 gi|212224565|ref|YP_002307801.1| - 0.036 13.8 0.0 0.059 13.1 0.0 1.3 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase AAA_28 PF13521.6 gi|212224565|ref|YP_002307801.1| - 0.046 14.0 0.0 0.14 12.4 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_17 PF13207.6 gi|212224565|ref|YP_002307801.1| - 0.062 13.7 0.0 0.39 11.1 0.0 2.2 2 0 0 2 2 2 0 AAA domain NTPase_1 PF03266.15 gi|212224565|ref|YP_002307801.1| - 0.064 13.2 0.0 0.47 10.3 0.0 2.2 1 1 0 2 2 2 0 NTPase SNF2_N PF00176.23 gi|212224565|ref|YP_002307801.1| - 0.07 11.8 0.0 0.39 9.4 0.0 1.9 1 1 1 2 2 2 0 SNF2 family N-terminal domain AAA_11 PF13086.6 gi|212224565|ref|YP_002307801.1| - 0.089 12.6 0.0 0.13 12.1 0.0 1.4 1 0 0 1 1 1 0 AAA domain TPR_7 PF13176.6 gi|212224565|ref|YP_002307801.1| - 0.095 12.8 0.2 0.29 11.2 0.2 1.9 1 0 0 1 1 1 0 Tetratricopeptide repeat FtsK_SpoIIIE PF01580.18 gi|212224565|ref|YP_002307801.1| - 0.1 11.9 0.1 0.71 9.2 0.0 2.3 3 0 0 3 3 3 0 FtsK/SpoIIIE family TPR_2 PF07719.17 gi|212224565|ref|YP_002307801.1| - 0.13 12.4 2.7 1.4 9.2 0.5 2.7 2 0 0 2 2 2 0 Tetratricopeptide repeat KTI12 PF08433.10 gi|212224565|ref|YP_002307801.1| - 0.15 11.5 0.0 0.24 10.8 0.0 1.3 1 0 0 1 1 1 0 Chromatin associated protein KTI12 TPR_16 PF13432.6 gi|212224565|ref|YP_002307801.1| - 0.77 10.4 6.3 0.9 10.2 2.5 2.8 4 0 0 4 4 2 0 Tetratricopeptide repeat Aminotran_1_2 PF00155.21 gi|212224566|ref|YP_002307802.1| - 1.7e-70 238.0 0.0 2e-70 237.8 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Cys_Met_Meta_PP PF01053.20 gi|212224566|ref|YP_002307802.1| - 0.00012 20.8 0.0 0.00018 20.1 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Beta_elim_lyase PF01212.21 gi|212224566|ref|YP_002307802.1| - 0.00014 21.2 0.0 0.00039 19.8 0.0 1.7 2 0 0 2 2 2 1 Beta-eliminating lyase Aminotran_5 PF00266.19 gi|212224566|ref|YP_002307802.1| - 0.00029 19.9 0.0 0.00056 19.0 0.0 1.4 1 0 0 1 1 1 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.17 gi|212224566|ref|YP_002307802.1| - 0.065 12.5 0.0 0.53 9.5 0.0 2.1 2 1 0 2 2 2 0 DegT/DnrJ/EryC1/StrS aminotransferase family YcaO PF02624.16 gi|212224566|ref|YP_002307802.1| - 0.098 11.9 0.0 0.48 9.6 0.0 2.0 2 0 0 2 2 2 0 YcaO cyclodehydratase, ATP-ad Mg2+-binding 7TM_GPCR_Srw PF10324.9 gi|212224567|ref|YP_002307803.1| - 0.37 10.0 1.6 0.52 9.5 1.6 1.2 1 0 0 1 1 1 0 Serpentine type 7TM GPCR chemoreceptor Srw BRI3BP PF14965.6 gi|212224567|ref|YP_002307803.1| - 0.4 10.2 0.1 0.4 10.2 0.1 2.3 1 1 1 2 2 2 0 Negative regulator of p53/TP53 tRNA_int_endo PF01974.17 gi|212224568|ref|YP_002307804.1| - 1.7e-30 104.9 1.1 2.6e-30 104.3 1.1 1.3 1 0 0 1 1 1 1 tRNA intron endonuclease, catalytic C-terminal domain tRNA_int_endo_N PF02778.14 gi|212224568|ref|YP_002307804.1| - 9.6e-22 76.4 1.1 1.6e-21 75.7 1.1 1.4 1 0 0 1 1 1 1 tRNA intron endonuclease, N-terminal domain tRNA_int_end_N2 PF12928.7 gi|212224568|ref|YP_002307804.1| - 0.0026 17.9 0.3 0.028 14.6 0.0 2.4 2 0 0 2 2 2 1 tRNA-splicing endonuclease subunit sen54 N-term Sen15 PF09631.10 gi|212224568|ref|YP_002307804.1| - 0.018 15.4 0.1 0.026 14.8 0.1 1.4 1 1 0 1 1 1 0 Sen15 protein Acetyltransf_1 PF00583.25 gi|212224569|ref|YP_002307805.1| - 7.2e-29 100.4 0.1 9e-29 100.1 0.1 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|212224569|ref|YP_002307805.1| - 4.1e-18 65.6 0.1 6e-18 65.0 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|212224569|ref|YP_002307805.1| - 2.3e-17 63.1 0.0 2.6e-17 62.9 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|212224569|ref|YP_002307805.1| - 1.7e-10 40.7 0.0 2.6e-10 40.1 0.0 1.2 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_9 PF13527.7 gi|212224569|ref|YP_002307805.1| - 2.3e-09 37.4 0.0 8.3e-08 32.4 0.0 2.3 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.6 gi|212224569|ref|YP_002307805.1| - 1.3e-08 34.6 0.0 5.3e-08 32.7 0.0 1.8 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 gi|212224569|ref|YP_002307805.1| - 2.4e-08 34.3 0.1 3.1e-08 33.9 0.1 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|212224569|ref|YP_002307805.1| - 7.9e-06 26.6 0.0 1.1e-05 26.1 0.0 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_6 PF13480.7 gi|212224569|ref|YP_002307805.1| - 9.2e-06 25.9 0.0 1.5e-05 25.2 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|212224569|ref|YP_002307805.1| - 0.00016 21.7 0.0 0.00025 21.1 0.0 1.3 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase GNAT_acetyltran PF12746.7 gi|212224569|ref|YP_002307805.1| - 0.00017 21.2 0.0 0.00022 20.9 0.0 1.1 1 0 0 1 1 1 1 GNAT acetyltransferase Acetyltransf_15 PF17013.5 gi|212224569|ref|YP_002307805.1| - 0.014 14.9 0.0 0.028 13.9 0.0 1.4 1 1 0 1 1 1 0 Putative acetyl-transferase PanZ PF12568.8 gi|212224569|ref|YP_002307805.1| - 0.016 15.0 0.0 0.019 14.7 0.0 1.3 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain, PanZ DUF87 PF01935.17 gi|212224571|ref|YP_002307807.1| - 2.4e-53 181.5 0.3 1.1e-52 179.4 0.0 1.9 2 0 0 2 2 2 1 Helicase HerA, central domain HAS-barrel PF09378.10 gi|212224571|ref|YP_002307807.1| - 7.9e-21 74.0 1.1 1.2e-19 70.2 0.1 3.3 3 1 0 3 3 3 1 HAS barrel domain DUF853 PF05872.12 gi|212224571|ref|YP_002307807.1| - 8.5e-08 31.2 0.1 0.00018 20.2 0.0 2.2 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) TrwB_AAD_bind PF10412.9 gi|212224571|ref|YP_002307807.1| - 0.00041 19.4 0.0 0.018 14.0 0.0 2.2 2 0 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain FtsK_SpoIIIE PF01580.18 gi|212224571|ref|YP_002307807.1| - 0.0025 17.2 0.2 1.5 8.1 0.0 2.2 2 0 0 2 2 2 2 FtsK/SpoIIIE family Proteasome PF00227.26 gi|212224571|ref|YP_002307807.1| - 0.0053 16.3 0.0 0.011 15.3 0.0 1.5 1 0 0 1 1 1 1 Proteasome subunit TORC_N PF12884.7 gi|212224571|ref|YP_002307807.1| - 0.13 13.1 0.2 0.29 12.0 0.2 1.5 1 0 0 1 1 1 0 Transducer of regulated CREB activity, N terminus AAA_22 PF13401.6 gi|212224571|ref|YP_002307807.1| - 0.16 12.2 0.0 3.5 7.9 0.0 2.5 2 0 0 2 2 2 0 AAA domain Membr_traf_MHD PF10540.9 gi|212224571|ref|YP_002307807.1| - 0.18 12.0 0.0 0.36 11.0 0.0 1.4 1 0 0 1 1 1 0 Munc13 (mammalian uncoordinated) homology domain DUF5519 PF17648.1 gi|212224571|ref|YP_002307807.1| - 0.19 11.6 0.0 0.41 10.5 0.0 1.5 1 0 0 1 1 1 0 Family of unknown function (DUF5519) Metallophos PF00149.28 gi|212224572|ref|YP_002307808.1| - 9.8e-17 62.1 0.0 1.9e-16 61.2 0.0 1.4 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|212224572|ref|YP_002307808.1| - 1.4e-14 54.6 0.0 4.8e-14 52.9 0.0 1.9 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain AAA_23 PF13476.6 gi|212224573|ref|YP_002307809.1| - 1.3e-21 78.0 1.6 1.3e-21 78.0 1.6 7.9 1 1 6 7 7 5 1 AAA domain Rad50_zn_hook PF04423.14 gi|212224573|ref|YP_002307809.1| - 7e-12 45.0 2.0 7e-12 45.0 2.0 9.7 12 1 1 13 13 9 1 Rad50 zinc hook motif SMC_N PF02463.19 gi|212224573|ref|YP_002307809.1| - 1.1e-10 41.3 44.8 1.4e-09 37.7 0.1 2.4 2 1 0 2 2 2 1 RecF/RecN/SMC N terminal domain Spc7 PF08317.11 gi|212224573|ref|YP_002307809.1| - 5.3e-10 38.7 117.4 4.5e-05 22.5 29.0 4.8 3 2 2 5 5 5 3 Spc7 kinetochore protein AAA_15 PF13175.6 gi|212224573|ref|YP_002307809.1| - 2.6e-09 37.3 79.3 1.2e-05 25.2 7.7 5.1 1 1 2 3 3 2 2 AAA ATPase domain AAA_21 PF13304.6 gi|212224573|ref|YP_002307809.1| - 1.3e-07 31.7 32.2 6.4e-06 26.2 1.1 4.1 1 1 1 3 3 3 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|212224573|ref|YP_002307809.1| - 9e-07 28.5 0.1 1.7e-06 27.7 0.1 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain NPV_P10 PF05531.12 gi|212224573|ref|YP_002307809.1| - 9.4e-07 29.2 24.4 2.9 8.4 1.6 10.0 4 4 4 8 8 8 1 Nucleopolyhedrovirus P10 protein AAA_13 PF13166.6 gi|212224573|ref|YP_002307809.1| - 1.8e-06 26.9 91.4 0.051 12.2 24.9 6.1 2 1 3 5 5 5 4 AAA domain ABC_tran PF00005.27 gi|212224573|ref|YP_002307809.1| - 1e-05 26.0 18.2 0.00089 19.8 0.0 5.5 2 2 0 2 2 1 1 ABC transporter Baculo_PEP_C PF04513.12 gi|212224573|ref|YP_002307809.1| - 2.3e-05 24.4 17.5 0.38 10.8 0.2 6.1 2 2 4 6 6 6 4 Baculovirus polyhedron envelope protein, PEP, C terminus DHR10 PF18595.1 gi|212224573|ref|YP_002307809.1| - 0.0011 19.0 12.5 0.0011 19.0 12.5 8.2 3 3 2 6 6 5 1 Designed helical repeat protein 10 domain SbcCD_C PF13558.6 gi|212224573|ref|YP_002307809.1| - 0.0013 18.9 0.0 0.0037 17.4 0.0 1.8 1 0 0 1 1 1 1 Putative exonuclease SbcCD, C subunit Golgin_A5 PF09787.9 gi|212224573|ref|YP_002307809.1| - 0.0016 18.0 33.1 0.0016 18.0 33.1 4.6 1 1 2 4 4 4 3 Golgin subfamily A member 5 Dynactin_p22 PF07426.11 gi|212224573|ref|YP_002307809.1| - 0.0028 17.5 8.2 0.0028 17.5 8.2 7.4 1 1 5 7 7 6 1 Dynactin subunit p22 Snapin_Pallidin PF14712.6 gi|212224573|ref|YP_002307809.1| - 0.0069 16.8 73.3 0.047 14.1 3.8 8.7 3 2 5 9 9 9 3 Snapin/Pallidin FtsK_SpoIIIE PF01580.18 gi|212224573|ref|YP_002307809.1| - 0.0087 15.4 0.0 0.0087 15.4 0.0 2.9 3 0 0 3 3 3 1 FtsK/SpoIIIE family Tropomyosin_1 PF12718.7 gi|212224573|ref|YP_002307809.1| - 0.0096 16.1 20.2 0.0096 16.1 20.2 6.6 2 2 4 6 6 5 2 Tropomyosin like XhlA PF10779.9 gi|212224573|ref|YP_002307809.1| - 0.012 15.8 6.6 0.012 15.8 6.6 11.0 7 5 5 13 13 11 0 Haemolysin XhlA RsgA_GTPase PF03193.16 gi|212224573|ref|YP_002307809.1| - 0.067 13.1 1.3 0.3 11.0 0.0 2.9 2 0 0 2 2 2 0 RsgA GTPase Atg14 PF10186.9 gi|212224573|ref|YP_002307809.1| - 0.071 12.2 97.5 0.0095 15.0 11.0 4.9 1 1 3 4 4 4 0 Vacuolar sorting 38 and autophagy-related subunit 14 MMR_HSR1 PF01926.23 gi|212224573|ref|YP_002307809.1| - 0.1 12.7 0.0 1.2 9.2 0.0 3.1 1 1 0 1 1 1 0 50S ribosome-binding GTPase DUF1664 PF07889.12 gi|212224573|ref|YP_002307809.1| - 0.13 12.3 57.8 0.31 11.1 0.3 7.8 3 3 4 8 8 8 0 Protein of unknown function (DUF1664) Caskin-tail PF16632.5 gi|212224573|ref|YP_002307809.1| - 0.24 11.8 6.4 28 5.2 0.0 4.9 3 0 0 3 3 3 0 C-terminal region of Caskin EzrA PF06160.12 gi|212224573|ref|YP_002307809.1| - 0.4 8.8 103.2 0.16 10.1 13.2 6.0 1 1 2 3 3 3 0 Septation ring formation regulator, EzrA TPR_MLP1_2 PF07926.12 gi|212224573|ref|YP_002307809.1| - 0.58 10.2 120.0 2.4 8.2 34.3 7.8 3 3 3 6 6 6 0 TPR/MLP1/MLP2-like protein AAA_22 PF13401.6 gi|212224573|ref|YP_002307809.1| - 0.82 9.9 4.9 2.9 8.2 0.0 3.8 3 1 0 3 3 3 0 AAA domain AAA_16 PF13191.6 gi|212224573|ref|YP_002307809.1| - 0.99 9.8 0.0 0.99 9.8 0.0 5.3 3 2 0 3 3 1 0 AAA ATPase domain Laminin_II PF06009.12 gi|212224573|ref|YP_002307809.1| - 1.1 9.3 70.4 0.023 14.7 4.9 8.0 2 2 6 9 9 9 0 Laminin Domain II Syntaxin-6_N PF09177.11 gi|212224573|ref|YP_002307809.1| - 2.1 9.0 75.7 0.7 10.5 5.3 8.6 2 2 5 7 7 6 0 Syntaxin 6, N-terminal BLOC1_2 PF10046.9 gi|212224573|ref|YP_002307809.1| - 5.6 7.3 84.3 1.1 9.6 4.8 9.4 3 2 3 9 9 9 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Fib_alpha PF08702.10 gi|212224573|ref|YP_002307809.1| - 8.3 6.6 62.7 0.021 15.0 3.5 6.1 1 1 7 8 8 8 0 Fibrinogen alpha/beta chain family Spectrin PF00435.21 gi|212224573|ref|YP_002307809.1| - 9.1 6.8 85.6 1.1 9.7 12.7 7.8 2 2 7 9 9 8 0 Spectrin repeat NurA PF09376.10 gi|212224574|ref|YP_002307810.1| - 2.5e-72 243.5 2.7 3e-72 243.2 2.7 1.1 1 0 0 1 1 1 1 NurA domain FecCD PF01032.18 gi|212224575|ref|YP_002307811.1| - 7.7e-86 287.9 24.3 9.6e-86 287.6 24.3 1.0 1 0 0 1 1 1 1 FecCD transport family Abhydrolase_1 PF00561.20 gi|212224575|ref|YP_002307811.1| - 0.19 11.3 0.3 0.3 10.7 0.3 1.2 1 0 0 1 1 1 0 alpha/beta hydrolase fold DUF543 PF04418.12 gi|212224575|ref|YP_002307811.1| - 0.56 10.2 4.2 0.25 11.4 0.5 2.4 3 0 0 3 3 3 0 Domain of unknown function (DUF543) ABC_tran PF00005.27 gi|212224576|ref|YP_002307812.1| - 6e-28 98.1 0.0 9.8e-28 97.4 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|212224576|ref|YP_002307812.1| - 3.5e-11 43.5 0.7 6.3e-05 22.9 0.0 2.2 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|212224576|ref|YP_002307812.1| - 6.2e-09 35.6 0.6 5.7e-06 25.9 0.6 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 gi|212224576|ref|YP_002307812.1| - 9.1e-06 26.0 0.1 2.3e-05 24.7 0.1 1.5 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|212224576|ref|YP_002307812.1| - 1.5e-05 24.6 0.0 2.8e-05 23.7 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.6 gi|212224576|ref|YP_002307812.1| - 6.1e-05 22.9 0.5 0.0037 17.0 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain ABC_ATPase PF09818.9 gi|212224576|ref|YP_002307812.1| - 0.00011 21.1 0.2 0.099 11.4 0.0 2.1 2 0 0 2 2 2 2 Predicted ATPase of the ABC class AAA_23 PF13476.6 gi|212224576|ref|YP_002307812.1| - 0.00013 22.5 0.1 0.00028 21.5 0.1 1.4 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|212224576|ref|YP_002307812.1| - 0.00022 21.4 0.0 0.00072 19.7 0.0 1.8 1 1 0 1 1 1 1 AAA domain AAA_27 PF13514.6 gi|212224576|ref|YP_002307812.1| - 0.00075 19.1 0.0 0.0013 18.4 0.0 1.3 1 0 0 1 1 1 1 AAA domain Mg_chelatase PF01078.21 gi|212224576|ref|YP_002307812.1| - 0.0009 18.7 0.0 0.0021 17.5 0.0 1.5 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI NTPase_1 PF03266.15 gi|212224576|ref|YP_002307812.1| - 0.0011 18.9 0.1 0.51 10.2 0.0 2.3 2 0 0 2 2 2 1 NTPase AAA_30 PF13604.6 gi|212224576|ref|YP_002307812.1| - 0.0016 18.2 0.1 0.0054 16.5 0.1 1.8 1 1 0 1 1 1 1 AAA domain Rad17 PF03215.15 gi|212224576|ref|YP_002307812.1| - 0.0017 18.3 0.0 0.0032 17.4 0.0 1.4 1 0 0 1 1 1 1 Rad17 P-loop domain RsgA_GTPase PF03193.16 gi|212224576|ref|YP_002307812.1| - 0.0043 17.0 0.1 0.0077 16.2 0.1 1.4 1 0 0 1 1 1 1 RsgA GTPase AAA_19 PF13245.6 gi|212224576|ref|YP_002307812.1| - 0.0055 17.0 0.1 0.011 16.0 0.1 1.6 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|212224576|ref|YP_002307812.1| - 0.0061 17.0 0.2 0.011 16.2 0.2 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA PF00004.29 gi|212224576|ref|YP_002307812.1| - 0.011 16.2 0.2 0.048 14.1 0.2 2.1 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) SbcCD_C PF13558.6 gi|212224576|ref|YP_002307812.1| - 0.015 15.6 0.1 0.16 12.2 0.1 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit MMR_HSR1 PF01926.23 gi|212224576|ref|YP_002307812.1| - 0.016 15.3 0.4 0.026 14.6 0.4 1.7 1 1 0 1 1 1 0 50S ribosome-binding GTPase AFG1_ATPase PF03969.16 gi|212224576|ref|YP_002307812.1| - 0.02 13.8 0.0 0.1 11.5 0.0 1.8 2 0 0 2 2 2 0 AFG1-like ATPase NACHT PF05729.12 gi|212224576|ref|YP_002307812.1| - 0.036 14.0 0.5 0.071 13.0 0.1 1.7 2 0 0 2 2 2 0 NACHT domain MeaB PF03308.16 gi|212224576|ref|YP_002307812.1| - 0.041 12.9 0.0 0.071 12.1 0.0 1.3 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_14 PF13173.6 gi|212224576|ref|YP_002307812.1| - 0.054 13.5 0.0 0.3 11.1 0.0 2.0 2 0 0 2 2 2 0 AAA domain GTP_EFTU PF00009.27 gi|212224576|ref|YP_002307812.1| - 0.066 12.7 0.0 0.1 12.1 0.0 1.2 1 0 0 1 1 1 0 Elongation factor Tu GTP binding domain Dynamin_N PF00350.23 gi|212224576|ref|YP_002307812.1| - 0.077 13.0 0.1 0.16 12.0 0.0 1.6 2 0 0 2 2 2 0 Dynamin family AAA_13 PF13166.6 gi|212224576|ref|YP_002307812.1| - 0.14 10.8 0.0 7.9 5.0 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_24 PF13479.6 gi|212224576|ref|YP_002307812.1| - 0.17 11.6 0.0 0.21 11.3 0.0 1.3 1 0 0 1 1 1 0 AAA domain ATP_bind_1 PF03029.17 gi|212224576|ref|YP_002307812.1| - 0.21 11.3 0.1 0.44 10.3 0.0 1.5 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein Proteasome PF00227.26 gi|212224577|ref|YP_002307813.1| - 1.1e-52 178.3 0.1 1.2e-52 178.2 0.1 1.0 1 0 0 1 1 1 1 Proteasome subunit DUF4157 PF13699.6 gi|212224578|ref|YP_002307814.1| - 0.00082 19.6 0.0 0.0028 17.9 0.0 1.8 2 0 0 2 2 2 1 Domain of unknown function (DUF4157) Tmemb_18A PF09771.9 gi|212224578|ref|YP_002307814.1| - 0.02 15.3 0.1 0.047 14.1 0.1 1.6 1 1 0 1 1 1 0 Transmembrane protein 188 PALP PF00291.25 gi|212224579|ref|YP_002307815.1| - 6.5e-73 245.7 0.0 7.4e-73 245.5 0.0 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme F420_oxidored PF03807.17 gi|212224579|ref|YP_002307815.1| - 0.064 13.8 0.3 0.18 12.4 0.3 1.7 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent LigB PF02900.18 gi|212224581|ref|YP_002307817.1| - 1.9e-15 56.7 0.0 2.2e-15 56.5 0.0 1.0 1 0 0 1 1 1 1 Catalytic LigB subunit of aromatic ring-opening dioxygenase tRNA_SAD PF07973.14 gi|212224582|ref|YP_002307818.1| - 0.0032 17.5 0.0 0.0059 16.7 0.0 1.4 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain TPALS PF18178.1 gi|212224582|ref|YP_002307818.1| - 0.11 12.0 0.0 0.13 11.7 0.0 1.2 1 0 0 1 1 1 0 TIR- and PNP-associating SLOG family cobW PF02492.19 gi|212224583|ref|YP_002307819.1| - 2.2e-05 24.1 0.0 4.5e-05 23.1 0.0 1.5 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain PTS_IIB PF02302.17 gi|212224583|ref|YP_002307819.1| - 0.0002 22.0 1.7 2 9.2 0.0 4.1 3 1 1 4 4 4 2 PTS system, Lactose/Cellobiose specific IIB subunit B12-binding PF02310.19 gi|212224583|ref|YP_002307819.1| - 0.00056 19.9 0.0 1.3 9.0 0.0 3.6 4 0 0 4 4 4 1 B12 binding domain CbiA PF01656.23 gi|212224583|ref|YP_002307819.1| - 0.0032 17.5 0.0 0.03 14.4 0.0 2.4 2 1 0 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|212224583|ref|YP_002307819.1| - 0.02 14.8 0.4 0.066 13.1 0.1 2.1 2 0 0 2 2 2 0 AAA domain PPK2 PF03976.14 gi|212224583|ref|YP_002307819.1| - 0.034 13.6 0.1 0.099 12.1 0.0 1.8 1 1 0 1 1 1 0 Polyphosphate kinase 2 (PPK2) MipZ PF09140.11 gi|212224583|ref|YP_002307819.1| - 0.044 13.1 0.0 0.12 11.6 0.0 1.7 2 0 0 2 2 2 0 ATPase MipZ UPF0180 PF03698.13 gi|212224583|ref|YP_002307819.1| - 0.045 13.9 0.3 2.6 8.3 0.0 3.6 4 1 1 5 5 5 0 Uncharacterised protein family (UPF0180) SWI2_SNF2 PF18766.1 gi|212224583|ref|YP_002307819.1| - 0.045 13.4 0.0 0.12 12.1 0.0 1.6 1 0 0 1 1 1 0 SWI2/SNF2 ATPase Thymidylate_kin PF02223.17 gi|212224583|ref|YP_002307819.1| - 0.05 13.3 0.0 0.12 12.0 0.0 1.6 1 0 0 1 1 1 0 Thymidylate kinase GFO_IDH_MocA PF01408.22 gi|212224583|ref|YP_002307819.1| - 0.056 14.3 0.0 13 6.6 0.0 3.1 3 0 0 3 3 3 0 Oxidoreductase family, NAD-binding Rossmann fold ParA PF10609.9 gi|212224583|ref|YP_002307819.1| - 0.07 12.6 0.2 0.12 11.8 0.2 1.3 1 0 0 1 1 1 0 NUBPL iron-transfer P-loop NTPase Zeta_toxin PF06414.12 gi|212224583|ref|YP_002307819.1| - 0.083 12.2 0.0 0.15 11.3 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin DUF2325 PF10087.9 gi|212224583|ref|YP_002307819.1| - 0.12 12.5 0.5 4.2 7.6 0.1 3.3 4 0 0 4 4 4 0 Uncharacterized protein conserved in bacteria (DUF2325) PB1 PF00564.24 gi|212224583|ref|YP_002307819.1| - 0.13 12.2 0.0 3.2 7.8 0.0 2.5 2 0 0 2 2 2 0 PB1 domain RuvX PF03652.15 gi|212224583|ref|YP_002307819.1| - 0.21 12.0 0.7 6.6 7.1 0.0 3.1 4 0 0 4 4 4 0 Holliday junction resolvase DUF2179 PF10035.9 gi|212224583|ref|YP_002307819.1| - 0.58 10.0 4.0 1.7 8.5 0.2 3.0 3 0 0 3 3 3 0 Uncharacterized protein conserved in bacteria (DUF2179) PLDc_N PF13396.6 gi|212224584|ref|YP_002307820.1| - 4.1e-08 33.0 7.5 4.1e-08 33.0 7.5 2.0 1 1 1 2 2 2 1 Phospholipase_D-nuclease N-terminal LGT PF01790.18 gi|212224584|ref|YP_002307820.1| - 0.00031 20.1 1.1 0.00035 19.9 1.1 1.1 1 0 0 1 1 1 1 Prolipoprotein diacylglyceryl transferase DUF805 PF05656.14 gi|212224584|ref|YP_002307820.1| - 0.0035 17.7 1.0 0.0038 17.6 1.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF805) Phage_holin_3_6 PF07332.11 gi|212224584|ref|YP_002307820.1| - 0.013 15.5 0.5 0.015 15.4 0.5 1.2 1 0 0 1 1 1 0 Putative Actinobacterial Holin-X, holin superfamily III DUF2207 PF09972.9 gi|212224584|ref|YP_002307820.1| - 0.028 13.2 2.4 0.034 12.9 2.4 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) DUF3290 PF11694.8 gi|212224584|ref|YP_002307820.1| - 0.037 14.0 0.8 0.04 13.9 0.3 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF3290) DUF4203 PF13886.6 gi|212224584|ref|YP_002307820.1| - 0.042 13.5 6.6 0.056 13.1 6.6 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4203) DUF1003 PF06210.11 gi|212224584|ref|YP_002307820.1| - 0.17 12.0 1.8 0.19 11.9 1.6 1.2 1 1 0 1 1 1 0 Protein of unknown function (DUF1003) Lig_chan PF00060.26 gi|212224584|ref|YP_002307820.1| - 0.22 11.3 0.7 0.5 10.2 0.1 1.8 1 1 1 2 2 2 0 Ligand-gated ion channel SARAF PF06682.12 gi|212224584|ref|YP_002307820.1| - 0.33 10.5 1.5 1.9 8.1 0.0 1.9 1 1 1 2 2 2 0 SOCE-associated regulatory factor of calcium homoeostasis Halogen_Hydrol PF10112.9 gi|212224584|ref|YP_002307820.1| - 0.43 10.6 1.4 0.64 10.0 1.4 1.3 1 1 0 1 1 1 0 5-bromo-4-chloroindolyl phosphate hydrolysis protein Chs7 PF12271.8 gi|212224584|ref|YP_002307820.1| - 0.59 9.4 4.7 0.67 9.3 4.7 1.0 1 0 0 1 1 1 0 Chitin synthase export chaperone FixQ PF05545.11 gi|212224584|ref|YP_002307820.1| - 0.74 9.8 0.1 0.74 9.8 0.1 2.2 2 1 0 2 2 1 0 Cbb3-type cytochrome oxidase component FixQ Orf78 PF06024.12 gi|212224584|ref|YP_002307820.1| - 0.88 9.9 5.4 0.27 11.5 0.3 1.9 1 1 1 2 2 2 0 Orf78 (ac78) FixS PF03597.15 gi|212224584|ref|YP_002307820.1| - 1.5 8.6 0.0 1.5 8.6 0.0 2.7 2 1 0 2 2 1 0 Cytochrome oxidase maturation protein cbb3-type FeoB_associated PF12669.7 gi|212224584|ref|YP_002307820.1| - 1.7 9.1 11.5 5.8 7.4 4.0 2.2 2 0 0 2 2 2 0 FeoB-associated Cys-rich membrane protein TMEM251 PF15190.6 gi|212224584|ref|YP_002307820.1| - 2.9 7.9 8.0 0.79 9.7 1.2 2.0 1 1 1 2 2 2 0 Transmembrane protein 251 Wzz PF02706.15 gi|212224584|ref|YP_002307820.1| - 5.4 7.4 6.9 1.3 9.4 0.5 2.0 2 0 0 2 2 2 0 Chain length determinant protein UPF0047 PF01894.17 gi|212224585|ref|YP_002307821.1| - 3.6e-36 123.8 0.0 4.3e-36 123.6 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised protein family UPF0047 VanZ PF04892.12 gi|212224586|ref|YP_002307822.1| - 7.9e-09 36.2 1.8 1.5e-08 35.3 1.8 1.5 1 1 0 1 1 1 1 VanZ like family Rhomboid PF01694.22 gi|212224586|ref|YP_002307822.1| - 0.0027 17.7 1.0 0.061 13.3 0.2 2.0 1 1 1 2 2 2 2 Rhomboid family ThiP_synth PF10120.9 gi|212224587|ref|YP_002307823.1| - 1.2e-47 161.6 0.0 1.8e-47 161.0 0.0 1.3 1 0 0 1 1 1 1 Thiamine-phosphate synthase HTH_3 PF01381.22 gi|212224587|ref|YP_002307823.1| - 3.1e-05 23.9 0.3 0.00045 20.2 0.1 2.4 2 0 0 2 2 2 1 Helix-turn-helix YdaS_antitoxin PF15943.5 gi|212224587|ref|YP_002307823.1| - 0.0067 16.3 0.0 0.023 14.6 0.0 1.8 2 0 0 2 2 2 1 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_23 PF13384.6 gi|212224587|ref|YP_002307823.1| - 0.013 15.3 0.0 0.032 14.0 0.0 1.7 1 0 0 1 1 1 0 Homeodomain-like domain HTH_19 PF12844.7 gi|212224587|ref|YP_002307823.1| - 0.023 14.7 0.1 0.098 12.7 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_5 PF01022.20 gi|212224587|ref|YP_002307823.1| - 0.024 14.5 0.2 0.13 12.2 0.0 2.2 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family Sigma70_r4_2 PF08281.12 gi|212224587|ref|YP_002307823.1| - 0.036 13.7 0.1 0.3 10.8 0.1 2.5 2 0 0 2 2 2 0 Sigma-70, region 4 UPF0180 PF03698.13 gi|212224587|ref|YP_002307823.1| - 0.044 14.0 0.2 0.12 12.6 0.0 1.7 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0180) RepB PF07506.11 gi|212224587|ref|YP_002307823.1| - 0.046 13.8 0.0 0.09 12.9 0.0 1.5 1 0 0 1 1 1 0 RepB plasmid partitioning protein KorB PF08535.10 gi|212224587|ref|YP_002307823.1| - 0.15 12.1 0.0 0.41 10.7 0.0 1.8 1 0 0 1 1 1 0 KorB domain HTH_37 PF13744.6 gi|212224587|ref|YP_002307823.1| - 0.18 11.8 0.0 0.41 10.6 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_7 PF02796.15 gi|212224587|ref|YP_002307823.1| - 0.2 11.8 0.2 0.43 10.7 0.2 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase OTCace_N PF02729.21 gi|212224588|ref|YP_002307824.1| - 5.2e-50 169.3 0.0 7.3e-50 168.8 0.0 1.2 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain OTCace PF00185.24 gi|212224588|ref|YP_002307824.1| - 2.7e-30 105.5 0.0 4.3e-30 104.9 0.0 1.3 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain PyrI PF01948.18 gi|212224589|ref|YP_002307825.1| - 4.5e-33 113.4 1.2 6.3e-33 112.9 1.2 1.2 1 0 0 1 1 1 1 Aspartate carbamoyltransferase regulatory chain, allosteric domain PyrI_C PF02748.15 gi|212224589|ref|YP_002307825.1| - 2.1e-20 72.4 3.6 4.4e-20 71.3 3.6 1.6 1 0 0 1 1 1 1 Aspartate carbamoyltransferase regulatory chain, metal binding domain C5-epim_C PF06662.13 gi|212224590|ref|YP_002307826.1| - 2.6e-41 141.2 8.6 4.2e-41 140.5 8.6 1.3 1 0 0 1 1 1 1 D-glucuronyl C5-epimerase C-terminus Glyco_hydro_127 PF07944.12 gi|212224590|ref|YP_002307826.1| - 0.00023 19.8 1.6 0.02 13.4 0.2 2.4 1 1 1 2 2 2 2 Beta-L-arabinofuranosidase, GH127 Glyco_hydro_88 PF07470.13 gi|212224590|ref|YP_002307826.1| - 0.075 12.1 3.1 4.3 6.3 0.4 2.6 1 1 0 2 2 2 0 Glycosyl Hydrolase Family 88 Glyco_hydro_76 PF03663.14 gi|212224590|ref|YP_002307826.1| - 1.2 8.6 5.4 2.1 7.8 0.3 2.6 1 1 0 2 2 2 0 Glycosyl hydrolase family 76 Thia_YuaJ PF09515.10 gi|212224591|ref|YP_002307827.1| - 0.3 11.1 11.4 0.4 10.7 10.7 1.7 1 1 0 1 1 1 0 Thiamine transporter protein (Thia_YuaJ) DUF4006 PF13179.6 gi|212224591|ref|YP_002307827.1| - 1.5 8.8 7.3 1.3 9.0 0.2 2.5 2 0 0 2 2 2 0 Family of unknown function (DUF4006) AAA_18 PF13238.6 gi|212224593|ref|YP_002307829.1| - 2.5e-17 63.7 0.5 5.9e-17 62.4 0.1 1.7 1 1 1 2 2 2 1 AAA domain CoaE PF01121.20 gi|212224593|ref|YP_002307829.1| - 8.6e-07 28.8 0.1 0.0016 18.2 0.0 2.3 2 0 0 2 2 2 2 Dephospho-CoA kinase AAA_33 PF13671.6 gi|212224593|ref|YP_002307829.1| - 2.1e-05 24.7 0.0 8.1e-05 22.8 0.0 2.0 2 1 0 2 2 2 1 AAA domain AAA_17 PF13207.6 gi|212224593|ref|YP_002307829.1| - 2.8e-05 24.5 0.4 0.00012 22.6 0.2 2.1 2 1 0 2 2 2 1 AAA domain dNK PF01712.19 gi|212224593|ref|YP_002307829.1| - 0.00041 20.3 0.2 0.2 11.5 0.0 2.3 2 0 0 2 2 2 2 Deoxynucleoside kinase SKI PF01202.22 gi|212224593|ref|YP_002307829.1| - 0.0028 17.8 0.3 0.039 14.1 0.3 2.1 2 0 0 2 2 2 1 Shikimate kinase TPR_12 PF13424.6 gi|212224594|ref|YP_002307830.1| - 3.7e-14 52.7 1.4 3.6e-06 27.2 0.1 2.8 3 0 0 3 3 2 2 Tetratricopeptide repeat TPR_1 PF00515.28 gi|212224594|ref|YP_002307830.1| - 1.4e-13 50.0 2.8 2.9e-07 30.0 0.1 3.7 3 0 0 3 3 3 2 Tetratricopeptide repeat AAA_16 PF13191.6 gi|212224594|ref|YP_002307830.1| - 3.7e-11 43.7 0.8 3.2e-07 30.9 0.0 3.4 4 0 0 4 4 4 2 AAA ATPase domain TPR_2 PF07719.17 gi|212224594|ref|YP_002307830.1| - 7.6e-10 38.2 0.6 4.4e-05 23.3 0.0 4.6 4 0 0 4 4 4 1 Tetratricopeptide repeat TPR_8 PF13181.6 gi|212224594|ref|YP_002307830.1| - 7.2e-08 32.0 13.0 6.2e-05 22.9 0.5 5.1 5 0 0 5 5 4 1 Tetratricopeptide repeat ATPase_2 PF01637.18 gi|212224594|ref|YP_002307830.1| - 2.4e-07 30.9 1.1 2.4e-07 30.9 1.1 2.9 2 1 0 2 2 2 1 ATPase domain predominantly from Archaea TPR_MalT PF17874.1 gi|212224594|ref|YP_002307830.1| - 7.4e-07 28.8 0.0 0.00017 21.0 0.0 2.2 2 0 0 2 2 2 1 MalT-like TPR region AAA_22 PF13401.6 gi|212224594|ref|YP_002307830.1| - 1.6e-06 28.4 0.3 3.3e-05 24.2 0.0 3.0 2 1 0 2 2 2 1 AAA domain TPR_10 PF13374.6 gi|212224594|ref|YP_002307830.1| - 1.9e-06 27.5 1.5 0.015 15.2 0.0 3.2 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_7 PF13176.6 gi|212224594|ref|YP_002307830.1| - 4.3e-06 26.4 0.7 0.14 12.2 0.1 4.2 4 0 0 4 4 3 2 Tetratricopeptide repeat AAA_35 PF14516.6 gi|212224594|ref|YP_002307830.1| - 0.00028 19.8 1.1 0.081 11.7 0.0 3.3 3 0 0 3 3 3 1 AAA-like domain TPR_14 PF13428.6 gi|212224594|ref|YP_002307830.1| - 0.00031 21.3 1.1 17 6.5 0.0 5.0 4 2 1 5 5 4 0 Tetratricopeptide repeat RuvB_N PF05496.12 gi|212224594|ref|YP_002307830.1| - 0.0014 18.4 0.0 0.44 10.3 0.0 2.5 2 0 0 2 2 2 1 Holliday junction DNA helicase RuvB P-loop domain TPR_11 PF13414.6 gi|212224594|ref|YP_002307830.1| - 0.0015 18.2 5.8 0.93 9.2 0.0 3.6 4 0 0 4 4 3 2 TPR repeat NB-ARC PF00931.22 gi|212224594|ref|YP_002307830.1| - 0.0049 16.1 0.1 0.57 9.3 0.0 2.5 2 0 0 2 2 2 1 NB-ARC domain AAA_14 PF13173.6 gi|212224594|ref|YP_002307830.1| - 0.0053 16.8 3.8 0.17 11.9 0.3 3.7 2 2 0 2 2 2 1 AAA domain NTPase_1 PF03266.15 gi|212224594|ref|YP_002307830.1| - 0.0071 16.3 0.0 0.021 14.8 0.0 1.8 1 0 0 1 1 1 1 NTPase AAA PF00004.29 gi|212224594|ref|YP_002307830.1| - 0.011 16.2 0.1 0.1 13.0 0.0 2.7 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) TsaE PF02367.17 gi|212224594|ref|YP_002307830.1| - 0.029 14.4 0.0 0.098 12.7 0.0 1.9 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE T2SSE PF00437.20 gi|212224594|ref|YP_002307830.1| - 0.046 12.8 0.0 0.29 10.2 0.0 2.1 2 0 0 2 2 2 0 Type II/IV secretion system protein DUF2179 PF10035.9 gi|212224594|ref|YP_002307830.1| - 0.065 13.0 0.2 21 5.0 0.0 2.9 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2179) tRNA_int_endo PF01974.17 gi|212224594|ref|YP_002307830.1| - 0.066 13.3 0.2 0.32 11.1 0.1 2.2 2 0 0 2 2 1 0 tRNA intron endonuclease, catalytic C-terminal domain AAA_7 PF12775.7 gi|212224594|ref|YP_002307830.1| - 0.089 12.3 0.0 0.37 10.3 0.0 1.9 2 0 0 2 2 2 0 P-loop containing dynein motor region AAA_30 PF13604.6 gi|212224594|ref|YP_002307830.1| - 0.091 12.5 0.0 0.2 11.3 0.0 1.5 1 0 0 1 1 1 0 AAA domain IstB_IS21 PF01695.17 gi|212224594|ref|YP_002307830.1| - 0.1 12.4 0.0 0.32 10.7 0.0 1.8 1 0 0 1 1 1 0 IstB-like ATP binding protein RNA_helicase PF00910.22 gi|212224594|ref|YP_002307830.1| - 0.17 12.3 0.0 4 7.9 0.0 2.9 2 1 0 2 2 2 0 RNA helicase DUF523 PF04463.12 gi|212224595|ref|YP_002307831.1| - 8.3e-06 25.9 0.0 1.3e-05 25.2 0.0 1.4 1 1 0 1 1 1 1 Protein of unknown function (DUF523) PGM_PMM_I PF02878.16 gi|212224596|ref|YP_002307832.1| - 2.3e-45 153.7 0.0 4.1e-45 152.9 0.0 1.4 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.16 gi|212224596|ref|YP_002307832.1| - 5.9e-20 71.8 0.0 1.8e-19 70.2 0.0 1.9 1 1 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_III PF02880.16 gi|212224596|ref|YP_002307832.1| - 2.1e-19 69.8 0.0 5.2e-19 68.5 0.0 1.6 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_IV PF00408.20 gi|212224596|ref|YP_002307832.1| - 1e-08 35.2 0.0 2.7e-08 33.8 0.0 1.7 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain CinA_KH PF18146.1 gi|212224596|ref|YP_002307832.1| - 0.012 15.7 0.1 0.056 13.6 0.1 2.2 1 0 0 1 1 1 0 Damage-inducible protein CinA KH domain Cellsynth_D PF03500.13 gi|212224596|ref|YP_002307832.1| - 0.096 12.6 0.1 22 4.9 0.0 2.9 2 1 1 3 3 3 0 Cellulose synthase subunit D Gmad2 PF10648.9 gi|212224597|ref|YP_002307833.1| - 0.006 16.8 0.0 0.011 15.9 0.0 1.5 1 0 0 1 1 1 1 Immunoglobulin-like domain of bacterial spore germination Wzt_C PF14524.6 gi|212224597|ref|YP_002307833.1| - 0.028 14.4 0.6 2.6 8.1 0.0 2.2 1 1 1 2 2 2 0 Wzt C-terminal domain DUF3592 PF12158.8 gi|212224597|ref|YP_002307833.1| - 0.03 14.4 0.5 0.06 13.4 0.5 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF3592) dCache_3 PF14827.6 gi|212224597|ref|YP_002307833.1| - 0.053 13.2 0.0 0.06 13.0 0.0 1.1 1 0 0 1 1 1 0 Double sensory domain of two-component sensor kinase Lipoprotein_18 PF06804.11 gi|212224597|ref|YP_002307833.1| - 0.074 12.1 0.0 0.094 11.7 0.0 1.1 1 0 0 1 1 1 0 NlpB/DapX lipoprotein LT-IIB PF06453.11 gi|212224598|ref|YP_002307834.1| - 0.089 12.7 0.2 0.58 10.1 0.1 2.2 2 0 0 2 2 2 0 Type II heat-labile enterotoxin , B subunit (LT-IIB) PQQ_2 PF13360.6 gi|212224598|ref|YP_002307834.1| - 0.11 12.1 0.2 1.6 8.3 0.0 2.6 1 1 1 2 2 2 0 PQQ-like domain BtpA PF03437.15 gi|212224600|ref|YP_002307836.1| - 1.1e-107 359.2 0.5 1.2e-107 359.0 0.5 1.0 1 0 0 1 1 1 1 BtpA family Bac_luciferase PF00296.20 gi|212224600|ref|YP_002307836.1| - 0.0043 16.5 0.0 1 8.7 0.0 2.2 2 0 0 2 2 2 2 Luciferase-like monooxygenase bPH_3 PF14470.6 gi|212224601|ref|YP_002307837.1| - 1.4e-21 76.6 0.6 6.2e-21 74.6 0.2 1.9 2 0 0 2 2 2 1 Bacterial PH domain SHOCT PF09851.9 gi|212224601|ref|YP_002307837.1| - 7.2e-12 44.7 5.6 1.8e-11 43.4 5.6 1.8 1 0 0 1 1 1 1 Short C-terminal domain DMAP_binding PF06464.11 gi|212224601|ref|YP_002307837.1| - 0.0013 19.6 4.3 0.0036 18.1 4.3 1.7 1 0 0 1 1 1 1 DMAP1-binding Domain GvpG PF05120.12 gi|212224601|ref|YP_002307837.1| - 0.0044 17.0 0.9 0.0087 16.0 0.2 1.9 2 0 0 2 2 2 1 Gas vesicle protein G CCDC24 PF15669.5 gi|212224601|ref|YP_002307837.1| - 0.012 15.5 0.0 0.017 15.0 0.0 1.2 1 0 0 1 1 1 0 Coiled-coil domain-containing protein 24 family Phage_XkdX PF09693.10 gi|212224601|ref|YP_002307837.1| - 0.074 13.1 1.5 0.9 9.6 0.9 2.7 2 1 0 2 2 2 0 Phage uncharacterised protein (Phage_XkdX) Alpha-amylase PF00128.24 gi|212224602|ref|YP_002307838.1| - 4.5e-55 187.6 0.1 6.7e-55 187.0 0.1 1.2 1 0 0 1 1 1 1 Alpha amylase, catalytic domain TIG PF01833.24 gi|212224602|ref|YP_002307838.1| - 3.1e-10 40.0 0.0 1.4e-09 37.9 0.0 2.1 2 0 0 2 2 2 1 IPT/TIG domain Malt_amylase_C PF16657.5 gi|212224602|ref|YP_002307838.1| - 6.2e-09 35.8 0.0 1.5e-08 34.6 0.0 1.7 1 0 0 1 1 1 1 Maltogenic Amylase, C-terminal domain DUF257 PF03192.13 gi|212224603|ref|YP_002307839.1| - 6.7e-59 199.1 0.6 7.6e-59 199.0 0.6 1.0 1 0 0 1 1 1 1 Pyrococcus protein of unknown function, DUF257 Nckap1 PF09735.9 gi|212224603|ref|YP_002307839.1| - 0.068 11.1 0.1 0.086 10.8 0.1 1.1 1 0 0 1 1 1 0 Membrane-associated apoptosis protein PmbA_TldD PF01523.16 gi|212224604|ref|YP_002307840.1| - 2.3e-49 168.8 0.0 2.8e-49 168.4 0.0 1.1 1 0 0 1 1 1 1 Putative modulator of DNA gyrase PmbA_TldD PF01523.16 gi|212224605|ref|YP_002307841.1| - 4.3e-63 213.8 0.2 6.6e-63 213.2 0.2 1.3 1 0 0 1 1 1 1 Putative modulator of DNA gyrase HTH_24 PF13412.6 gi|212224606|ref|YP_002307842.1| - 1.7e-21 75.5 0.5 1.1e-11 44.1 0.0 2.2 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|212224606|ref|YP_002307842.1| - 6.5e-19 67.5 0.2 2.3e-13 49.7 0.1 2.2 2 0 0 2 2 2 2 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|212224606|ref|YP_002307842.1| - 6.8e-17 61.3 0.2 3.3e-12 46.3 0.1 2.2 2 0 0 2 2 2 2 Helix-turn-helix domain MarR_2 PF12802.7 gi|212224606|ref|YP_002307842.1| - 1.1e-11 44.4 0.1 1.6e-06 27.9 0.0 2.2 2 0 0 2 2 2 2 MarR family MarR PF01047.22 gi|212224606|ref|YP_002307842.1| - 2e-11 43.6 0.1 1.1e-05 25.3 0.1 2.4 2 0 0 2 2 2 2 MarR family TrmB PF01978.19 gi|212224606|ref|YP_002307842.1| - 6.8e-09 35.5 0.1 2.4e-06 27.4 0.1 2.2 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_AsnC-type PF13404.6 gi|212224606|ref|YP_002307842.1| - 1.4e-08 34.4 0.0 0.0055 16.5 0.0 2.7 2 1 0 2 2 2 2 AsnC-type helix-turn-helix domain HTH_IclR PF09339.10 gi|212224606|ref|YP_002307842.1| - 8.5e-08 31.9 0.2 2.2e-05 24.1 0.1 2.2 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_38 PF13936.6 gi|212224606|ref|YP_002307842.1| - 1.5e-07 31.1 1.5 0.00014 21.5 0.0 2.8 3 0 0 3 3 3 2 Helix-turn-helix domain HTH_11 PF08279.12 gi|212224606|ref|YP_002307842.1| - 1.9e-07 30.9 0.2 0.017 15.0 0.0 2.5 2 1 0 2 2 2 2 HTH domain HTH_Crp_2 PF13545.6 gi|212224606|ref|YP_002307842.1| - 3.4e-07 30.1 0.4 2.7e-05 24.1 0.1 2.4 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain Sigma70_r4_2 PF08281.12 gi|212224606|ref|YP_002307842.1| - 7.3e-07 28.8 0.0 0.00042 19.9 0.0 2.3 2 0 0 2 2 2 1 Sigma-70, region 4 Rrf2 PF02082.20 gi|212224606|ref|YP_002307842.1| - 8.1e-06 26.1 0.1 0.0002 21.6 0.1 2.2 2 0 0 2 2 2 1 Transcriptional regulator FaeA PF04703.12 gi|212224606|ref|YP_002307842.1| - 9.9e-06 25.8 0.1 0.0029 18.0 0.0 2.2 2 0 0 2 2 2 1 FaeA-like protein HTH_23 PF13384.6 gi|212224606|ref|YP_002307842.1| - 1.1e-05 25.1 0.2 0.015 15.1 0.0 2.8 3 0 0 3 3 2 1 Homeodomain-like domain GerE PF00196.19 gi|212224606|ref|YP_002307842.1| - 1.6e-05 24.4 0.0 5e-05 22.8 0.0 1.7 2 0 0 2 2 2 1 Bacterial regulatory proteins, luxR family Sigma70_r4 PF04545.16 gi|212224606|ref|YP_002307842.1| - 3.3e-05 23.3 0.4 0.0039 16.7 0.0 2.3 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_10 PF04967.12 gi|212224606|ref|YP_002307842.1| - 4.3e-05 23.2 0.0 0.34 10.7 0.0 2.6 2 0 0 2 2 2 2 HTH DNA binding domain HTH_27 PF13463.6 gi|212224606|ref|YP_002307842.1| - 4.9e-05 23.7 0.2 0.00073 20.0 0.0 2.2 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_28 PF13518.6 gi|212224606|ref|YP_002307842.1| - 7.4e-05 22.8 0.8 0.0041 17.2 0.0 2.6 3 0 0 3 3 2 1 Helix-turn-helix domain HTH_34 PF13601.6 gi|212224606|ref|YP_002307842.1| - 0.00011 22.3 0.0 0.11 12.7 0.0 2.2 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_Tnp_ISL3 PF13542.6 gi|212224606|ref|YP_002307842.1| - 0.00014 21.2 0.0 0.0089 15.4 0.0 2.3 2 0 0 2 2 2 1 Helix-turn-helix domain of transposase family ISL3 HTH_40 PF14493.6 gi|212224606|ref|YP_002307842.1| - 0.00018 21.9 0.0 0.051 14.0 0.0 2.3 1 1 1 2 2 2 1 Helix-turn-helix domain Fe_dep_repress PF01325.19 gi|212224606|ref|YP_002307842.1| - 0.00027 21.1 0.0 0.0078 16.4 0.0 2.3 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain RPA_C PF08784.11 gi|212224606|ref|YP_002307842.1| - 0.00073 20.2 0.0 0.19 12.4 0.0 2.2 2 0 0 2 2 2 1 Replication protein A C terminal DprA_WH PF17782.1 gi|212224606|ref|YP_002307842.1| - 0.00099 19.2 0.0 2.1 8.5 0.0 2.3 2 0 0 2 2 2 2 DprA winged helix domain PaaX PF07848.12 gi|212224606|ref|YP_002307842.1| - 0.001 19.3 0.2 4.2 7.7 0.0 2.9 3 0 0 3 3 3 0 PaaX-like protein HTH_29 PF13551.6 gi|212224606|ref|YP_002307842.1| - 0.0014 18.6 0.0 0.0052 16.8 0.0 2.0 2 1 0 2 2 2 1 Winged helix-turn helix HTH_17 PF12728.7 gi|212224606|ref|YP_002307842.1| - 0.0015 18.7 0.8 0.4 10.9 0.5 2.5 2 1 0 2 2 2 1 Helix-turn-helix domain Penicillinase_R PF03965.16 gi|212224606|ref|YP_002307842.1| - 0.0019 18.5 0.0 0.011 16.0 0.0 2.1 2 1 0 2 2 2 1 Penicillinase repressor GntR PF00392.21 gi|212224606|ref|YP_002307842.1| - 0.0019 17.8 0.1 1.4 8.7 0.1 2.3 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family HTH_36 PF13730.6 gi|212224606|ref|YP_002307842.1| - 0.0031 17.4 0.0 0.015 15.3 0.0 2.1 2 1 0 2 2 2 1 Helix-turn-helix domain TetR_N PF00440.23 gi|212224606|ref|YP_002307842.1| - 0.0075 16.0 0.0 1.8 8.4 0.0 2.3 2 0 0 2 2 2 1 Bacterial regulatory proteins, tetR family HTH_7 PF02796.15 gi|212224606|ref|YP_002307842.1| - 0.0078 16.3 0.0 0.12 12.4 0.0 2.4 2 0 0 2 2 2 1 Helix-turn-helix domain of resolvase MerR_1 PF13411.6 gi|212224606|ref|YP_002307842.1| - 0.0095 16.0 0.6 4.7 7.4 0.0 2.8 2 1 0 2 2 2 0 MerR HTH family regulatory protein LexA_DNA_bind PF01726.16 gi|212224606|ref|YP_002307842.1| - 0.012 15.4 0.3 4.4 7.2 0.1 2.5 2 0 0 2 2 2 0 LexA DNA binding domain HTH_1 PF00126.27 gi|212224606|ref|YP_002307842.1| - 0.014 15.4 0.0 0.053 13.5 0.0 1.9 2 0 0 2 2 2 0 Bacterial regulatory helix-turn-helix protein, lysR family Cdc6_C PF09079.11 gi|212224606|ref|YP_002307842.1| - 0.029 14.3 0.0 0.059 13.3 0.0 1.6 1 0 0 1 1 1 0 CDC6, C terminal winged helix domain TBPIP PF07106.13 gi|212224606|ref|YP_002307842.1| - 0.032 14.1 0.1 4.3 7.3 0.1 2.4 2 0 0 2 2 2 0 TBPIP/Hop2 winged helix domain TFIIE_alpha PF02002.17 gi|212224606|ref|YP_002307842.1| - 0.036 13.9 0.1 1.1 9.2 0.1 2.1 2 0 0 2 2 2 0 TFIIE alpha subunit HTH_3 PF01381.22 gi|212224606|ref|YP_002307842.1| - 0.064 13.3 0.1 2.4 8.3 0.0 2.7 3 0 0 3 3 2 0 Helix-turn-helix YdaS_antitoxin PF15943.5 gi|212224606|ref|YP_002307842.1| - 0.074 12.9 0.0 1.2 9.1 0.0 2.4 3 0 0 3 3 2 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT DUF742 PF05331.11 gi|212224606|ref|YP_002307842.1| - 0.086 12.7 0.0 0.13 12.1 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF742) HTH_41 PF14502.6 gi|212224606|ref|YP_002307842.1| - 0.11 12.2 0.1 3.6 7.4 0.0 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain Trp_repressor PF01371.19 gi|212224606|ref|YP_002307842.1| - 0.12 12.6 0.0 2.9 8.1 0.0 2.3 2 0 0 2 2 2 0 Trp repressor protein Arg_repressor PF01316.21 gi|212224606|ref|YP_002307842.1| - 0.13 12.0 0.0 0.29 10.9 0.0 1.7 1 0 0 1 1 1 0 Arginine repressor, DNA binding domain Dimerisation2 PF16864.5 gi|212224606|ref|YP_002307842.1| - 0.18 11.8 0.0 0.32 11.0 0.0 1.3 1 0 0 1 1 1 0 Dimerisation domain 7TMR-DISM_7TM PF07695.11 gi|212224607|ref|YP_002307843.1| - 0.0018 18.2 10.6 0.0019 18.1 10.6 1.1 1 0 0 1 1 1 1 7TM diverse intracellular signalling Oxidored_q3 PF00499.20 gi|212224607|ref|YP_002307843.1| - 0.0082 15.9 3.0 0.0082 15.9 3.0 1.9 1 1 1 2 2 2 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 FtsK_4TM PF13491.6 gi|212224607|ref|YP_002307843.1| - 0.13 12.0 6.7 0.02 14.6 2.7 1.5 1 1 1 2 2 2 0 4TM region of DNA translocase FtsK/SpoIIIE TrbC PF04956.13 gi|212224607|ref|YP_002307843.1| - 0.27 11.5 6.2 0.075 13.3 3.1 1.6 1 1 0 1 1 1 0 TrbC/VIRB2 family Usp PF00582.26 gi|212224608|ref|YP_002307844.1| - 9e-21 74.9 0.0 1.1e-20 74.6 0.0 1.1 1 0 0 1 1 1 1 Universal stress protein family PGK PF00162.19 gi|212224608|ref|YP_002307844.1| - 0.046 12.7 0.1 0.059 12.3 0.1 1.1 1 0 0 1 1 1 0 Phosphoglycerate kinase CitMHS PF03600.16 gi|212224609|ref|YP_002307845.1| - 1.9e-51 175.0 32.9 1.9e-51 175.0 32.9 1.8 1 1 1 2 2 2 1 Citrate transporter ArsB PF02040.15 gi|212224609|ref|YP_002307845.1| - 1.1e-21 77.7 29.6 1.3e-21 77.4 29.6 1.0 1 0 0 1 1 1 1 Arsenical pump membrane protein NhaB PF06450.12 gi|212224609|ref|YP_002307845.1| - 5.5e-06 25.5 9.0 5.5e-06 25.5 9.0 2.5 2 1 0 2 2 2 1 Bacterial Na+/H+ antiporter B (NhaB) GPI2 PF06432.11 gi|212224609|ref|YP_002307845.1| - 0.65 9.4 7.7 0.3 10.5 0.4 2.9 2 2 0 2 2 2 0 Phosphatidylinositol N-acetylglucosaminyltransferase Usp PF00582.26 gi|212224610|ref|YP_002307846.1| - 0.0042 17.6 0.0 0.0052 17.3 0.0 1.2 1 0 0 1 1 1 1 Universal stress protein family Lon_C PF05362.13 gi|212224611|ref|YP_002307847.1| - 4.4e-13 49.3 1.4 1.1e-12 47.9 1.4 1.7 1 0 0 1 1 1 1 Lon protease (S16) C-terminal proteolytic domain ChlI PF13541.6 gi|212224611|ref|YP_002307847.1| - 0.0024 17.7 0.6 0.0049 16.7 0.1 1.8 2 0 0 2 2 2 1 Subunit ChlI of Mg-chelatase DUF357 PF04010.13 gi|212224611|ref|YP_002307847.1| - 0.0077 16.3 15.0 0.092 12.8 0.5 5.1 4 1 1 5 5 5 2 Protein of unknown function (DUF357) Spectrin PF00435.21 gi|212224611|ref|YP_002307847.1| - 0.034 14.6 0.8 0.19 12.2 0.1 2.4 2 0 0 2 2 2 0 Spectrin repeat PAPS_reduct PF01507.19 gi|212224612|ref|YP_002307848.1| - 2.9e-31 108.9 0.0 4.6e-31 108.2 0.0 1.3 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family QueC PF06508.13 gi|212224612|ref|YP_002307848.1| - 0.0001 21.9 0.0 0.00022 20.8 0.0 1.5 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC NAD_synthase PF02540.17 gi|212224612|ref|YP_002307848.1| - 0.0017 17.5 0.0 0.014 14.5 0.0 2.1 2 0 0 2 2 2 1 NAD synthase DUF166 PF02593.14 gi|212224612|ref|YP_002307848.1| - 0.14 11.7 0.0 0.22 11.0 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function ATP_bind_3 PF01171.20 gi|212224612|ref|YP_002307848.1| - 0.19 11.4 0.0 0.53 10.0 0.0 1.8 2 0 0 2 2 2 0 PP-loop family Peptidase_M20 PF01546.28 gi|212224613|ref|YP_002307849.1| - 2.3e-28 99.3 0.0 3e-28 99.0 0.0 1.1 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 gi|212224613|ref|YP_002307849.1| - 2.6e-10 40.2 0.0 5.1e-10 39.2 0.0 1.5 1 0 0 1 1 1 1 Peptidase dimerisation domain Peptidase_M28 PF04389.17 gi|212224613|ref|YP_002307849.1| - 0.0019 17.9 0.0 0.0026 17.5 0.0 1.2 1 0 0 1 1 1 1 Peptidase family M28 2-Hacid_dh_C PF02826.19 gi|212224614|ref|YP_002307850.1| - 7.4e-72 240.4 0.0 1.3e-71 239.6 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.30 gi|212224614|ref|YP_002307850.1| - 1.7e-40 137.8 0.2 2e-40 137.6 0.2 1.0 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NAD_binding_2 PF03446.15 gi|212224614|ref|YP_002307850.1| - 1.1e-06 28.9 0.2 3.6e-06 27.2 0.0 1.9 2 1 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase IlvN PF07991.12 gi|212224614|ref|YP_002307850.1| - 1.7e-06 27.7 0.5 7.8e-06 25.6 0.0 2.3 3 0 0 3 3 3 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain AlaDh_PNT_C PF01262.21 gi|212224614|ref|YP_002307850.1| - 5.1e-05 22.7 0.2 0.0001 21.7 0.2 1.6 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain AdoHcyase_NAD PF00670.21 gi|212224614|ref|YP_002307850.1| - 0.00017 21.7 0.0 0.00042 20.4 0.0 1.6 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain F420_oxidored PF03807.17 gi|212224614|ref|YP_002307850.1| - 0.00038 21.0 0.9 0.028 15.0 0.0 2.6 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent XdhC_C PF13478.6 gi|212224614|ref|YP_002307850.1| - 0.00066 20.2 0.0 0.01 16.4 0.0 2.5 2 1 0 2 2 2 1 XdhC Rossmann domain 3HCDH_N PF02737.18 gi|212224614|ref|YP_002307850.1| - 0.0031 17.4 0.1 0.0091 15.9 0.0 1.9 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain UDPG_MGDP_dh_C PF03720.15 gi|212224614|ref|YP_002307850.1| - 0.015 15.7 0.2 0.16 12.4 0.0 2.3 2 0 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain NmrA PF05368.13 gi|212224614|ref|YP_002307850.1| - 0.02 14.4 0.6 0.079 12.5 0.1 2.2 3 0 0 3 3 3 0 NmrA-like family NAD_binding_7 PF13241.6 gi|212224614|ref|YP_002307850.1| - 0.025 15.0 0.1 0.095 13.1 0.0 2.0 2 0 0 2 2 2 0 Putative NAD(P)-binding TrkA_N PF02254.18 gi|212224614|ref|YP_002307850.1| - 0.032 14.5 0.4 0.41 10.9 0.0 2.7 2 2 0 2 2 2 0 TrkA-N domain ELFV_dehydrog PF00208.21 gi|212224614|ref|YP_002307850.1| - 0.075 12.7 0.3 0.22 11.2 0.3 1.8 1 1 0 1 1 1 0 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase Nitro_FeMo-Co PF02579.17 gi|212224614|ref|YP_002307850.1| - 6.8 7.1 7.4 42 4.5 0.1 4.2 4 2 2 6 6 6 0 Dinitrogenase iron-molybdenum cofactor PhoU_div PF01865.16 gi|212224615|ref|YP_002307851.1| - 5.6e-40 137.0 6.6 6.3e-40 136.8 6.6 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF47 Sod_Ni PF09055.11 gi|212224615|ref|YP_002307851.1| - 0.0005 20.6 0.6 0.076 13.6 0.0 2.1 1 1 1 2 2 2 2 Nickel-containing superoxide dismutase PhoU PF01895.19 gi|212224615|ref|YP_002307851.1| - 0.01 16.3 7.1 0.65 10.5 0.4 2.6 2 0 0 2 2 2 0 PhoU domain DUF16 PF01519.16 gi|212224615|ref|YP_002307851.1| - 0.03 14.8 1.6 3.2 8.3 0.0 2.4 2 1 0 2 2 2 0 Protein of unknown function DUF16 KfrA_N PF11740.8 gi|212224615|ref|YP_002307851.1| - 0.11 13.2 4.7 0.39 11.4 0.4 2.7 2 1 1 3 3 3 0 Plasmid replication region DNA-binding N-term T3SSipB PF16535.5 gi|212224615|ref|YP_002307851.1| - 0.16 12.4 3.0 2.4 8.6 0.1 2.3 1 1 1 2 2 2 0 Type III cell invasion protein SipB PCRF PF03462.18 gi|212224615|ref|YP_002307851.1| - 0.26 11.1 2.5 2.8 7.8 0.1 2.2 2 0 0 2 2 2 0 PCRF domain DUF948 PF06103.11 gi|212224615|ref|YP_002307851.1| - 0.28 11.5 6.1 4.7 7.5 1.1 3.5 1 1 2 3 3 3 0 Bacterial protein of unknown function (DUF948) zf-HC2 PF13490.6 gi|212224615|ref|YP_002307851.1| - 0.43 10.9 2.7 0.52 10.6 0.1 2.5 3 0 0 3 3 3 0 Putative zinc-finger YtxH PF12732.7 gi|212224615|ref|YP_002307851.1| - 1.2 9.7 10.5 3.8e+02 1.7 10.5 3.4 1 1 0 1 1 1 0 YtxH-like protein ApbA PF02558.16 gi|212224616|ref|YP_002307852.1| - 8.6e-38 129.4 0.0 3.2e-37 127.5 0.0 1.8 2 0 0 2 2 2 1 Ketopantoate reductase PanE/ApbA ApbA_C PF08546.11 gi|212224616|ref|YP_002307852.1| - 2.7e-31 108.4 0.0 4e-31 107.8 0.0 1.3 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA C terminal Pyr_redox PF00070.27 gi|212224616|ref|YP_002307852.1| - 0.00014 22.4 0.6 0.00073 20.0 0.2 2.3 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase NAD_Gly3P_dh_N PF01210.23 gi|212224616|ref|YP_002307852.1| - 0.00047 20.2 0.0 0.0011 18.9 0.0 1.7 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Sacchrp_dh_NADP PF03435.18 gi|212224616|ref|YP_002307852.1| - 0.016 15.5 0.0 0.034 14.4 0.0 1.6 1 0 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain Pyr_redox_2 PF07992.14 gi|212224616|ref|YP_002307852.1| - 0.025 13.8 0.2 0.066 12.4 0.1 1.7 2 1 1 3 3 3 0 Pyridine nucleotide-disulphide oxidoreductase UDPG_MGDP_dh_N PF03721.14 gi|212224616|ref|YP_002307852.1| - 0.031 13.9 0.1 0.049 13.2 0.1 1.3 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NAD_binding_8 PF13450.6 gi|212224616|ref|YP_002307852.1| - 0.034 14.4 0.3 0.071 13.4 0.3 1.6 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain 3HCDH_N PF02737.18 gi|212224616|ref|YP_002307852.1| - 0.062 13.2 0.2 0.19 11.6 0.1 1.8 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain F420_oxidored PF03807.17 gi|212224616|ref|YP_002307852.1| - 0.066 13.8 0.0 0.15 12.7 0.0 1.7 1 1 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent FAD_binding_3 PF01494.19 gi|212224616|ref|YP_002307852.1| - 0.099 11.9 0.2 0.2 10.8 0.1 1.5 2 0 0 2 2 2 0 FAD binding domain TrkA_N PF02254.18 gi|212224616|ref|YP_002307852.1| - 0.14 12.5 0.0 0.29 11.4 0.0 1.7 1 0 0 1 1 1 0 TrkA-N domain SpoU_methylase PF00588.19 gi|212224617|ref|YP_002307853.1| - 8.2e-33 113.6 0.0 1.2e-32 113.1 0.0 1.2 1 0 0 1 1 1 1 SpoU rRNA Methylase family DNA_binding_1 PF01035.20 gi|212224618|ref|YP_002307854.1| - 1.1e-23 83.1 0.0 1.6e-23 82.6 0.0 1.3 1 0 0 1 1 1 1 6-O-methylguanine DNA methyltransferase, DNA binding domain DUF1938 PF09153.10 gi|212224618|ref|YP_002307854.1| - 4.5e-21 74.7 0.2 8.3e-21 73.9 0.1 1.4 2 0 0 2 2 2 1 Domain of unknown function (DUF1938) TPR_15 PF13429.6 gi|212224619|ref|YP_002307855.1| - 1.5e-09 37.5 18.5 6.2e-09 35.5 13.9 3.4 1 1 1 2 2 2 2 Tetratricopeptide repeat TPR_2 PF07719.17 gi|212224619|ref|YP_002307855.1| - 2.2e-09 36.7 43.7 0.0022 18.0 0.9 7.5 6 2 2 8 8 8 4 Tetratricopeptide repeat TPR_6 PF13174.6 gi|212224619|ref|YP_002307855.1| - 2.6e-08 34.0 26.8 0.08 13.6 0.3 6.6 6 0 0 6 6 6 3 Tetratricopeptide repeat TPR_8 PF13181.6 gi|212224619|ref|YP_002307855.1| - 1.5e-06 27.9 38.7 0.048 13.9 0.5 6.6 5 1 2 7 7 7 3 Tetratricopeptide repeat TPR_16 PF13432.6 gi|212224619|ref|YP_002307855.1| - 3.8e-05 24.2 26.5 0.046 14.4 2.2 5.4 2 1 3 5 5 5 4 Tetratricopeptide repeat SNAP PF14938.6 gi|212224619|ref|YP_002307855.1| - 0.00015 21.3 26.5 0.00015 21.3 26.5 2.3 1 1 1 2 2 2 2 Soluble NSF attachment protein, SNAP TPR_1 PF00515.28 gi|212224619|ref|YP_002307855.1| - 0.00024 20.8 32.9 0.2 11.5 0.5 6.8 6 1 0 6 6 6 4 Tetratricopeptide repeat TPR_12 PF13424.6 gi|212224619|ref|YP_002307855.1| - 0.001 19.3 27.8 0.0018 18.5 2.0 4.7 1 1 4 5 5 5 4 Tetratricopeptide repeat TPR_19 PF14559.6 gi|212224619|ref|YP_002307855.1| - 0.001 19.5 20.4 0.12 12.9 1.4 3.7 3 1 0 3 3 3 3 Tetratricopeptide repeat TPR_14 PF13428.6 gi|212224619|ref|YP_002307855.1| - 0.0082 16.9 25.0 1.2 10.2 0.2 6.1 2 2 4 6 6 6 2 Tetratricopeptide repeat MIT PF04212.18 gi|212224619|ref|YP_002307855.1| - 0.024 14.7 1.1 0.024 14.7 1.1 5.6 6 0 0 6 6 6 0 MIT (microtubule interacting and transport) domain TPR_7 PF13176.6 gi|212224619|ref|YP_002307855.1| - 0.079 13.0 29.1 0.73 10.0 1.3 7.5 5 2 2 7 7 7 0 Tetratricopeptide repeat TPR_9 PF13371.6 gi|212224619|ref|YP_002307855.1| - 0.17 12.1 7.7 31 4.8 0.3 5.0 2 2 4 6 6 6 0 Tetratricopeptide repeat Clathrin PF00637.20 gi|212224619|ref|YP_002307855.1| - 0.26 11.1 13.8 0.082 12.8 2.0 3.4 1 1 4 5 5 5 0 Region in Clathrin and VPS DUF4316 PF14195.6 gi|212224619|ref|YP_002307855.1| - 0.68 9.7 3.4 1.4 8.7 0.3 2.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4316) YfhO PF09586.10 gi|212224619|ref|YP_002307855.1| - 0.83 7.8 9.2 1.2 7.2 9.2 1.2 1 0 0 1 1 1 0 Bacterial membrane protein YfhO DUF4017 PF13209.6 gi|212224619|ref|YP_002307855.1| - 1.5 8.8 12.7 0.046 13.7 5.2 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF4017) XPB_DRD PF18458.1 gi|212224619|ref|YP_002307855.1| - 1.9 8.4 6.3 0.41 10.6 0.3 2.6 3 0 0 3 3 3 0 Xeroderma pigmentosum group B helicase damage recognition domain EI24 PF07264.11 gi|212224619|ref|YP_002307855.1| - 3.4 7.9 16.2 7.6 6.7 16.2 1.5 1 0 0 1 1 1 0 Etoposide-induced protein 2.4 (EI24) CBS PF00571.28 gi|212224620|ref|YP_002307856.1| - 1.1e-21 77.0 2.0 2.7e-10 40.5 0.1 2.2 2 0 0 2 2 2 2 CBS domain Pox_RNA_Pol_19 PF05320.12 gi|212224620|ref|YP_002307856.1| - 0.027 14.5 0.2 0.036 14.0 0.2 1.2 1 0 0 1 1 1 0 Poxvirus DNA-directed RNA polymerase 19 kDa subunit MAPKK1_Int PF08923.10 gi|212224620|ref|YP_002307856.1| - 0.16 11.8 0.3 0.31 10.9 0.1 1.5 2 0 0 2 2 2 0 Mitogen-activated protein kinase kinase 1 interacting Na_H_Exchanger PF00999.21 gi|212224621|ref|YP_002307857.1| - 2.1e-60 204.6 44.1 2.4e-60 204.4 44.1 1.0 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family Peptidase_C16 PF01831.17 gi|212224621|ref|YP_002307857.1| - 0.072 12.8 0.0 0.15 11.8 0.0 1.5 1 0 0 1 1 1 0 Peptidase C16 family NAC PF01849.18 gi|212224623|ref|YP_002307859.1| - 1.6e-09 37.6 1.2 2e-09 37.3 0.6 1.6 2 0 0 2 2 2 1 NAC domain UBA_4 PF14555.6 gi|212224623|ref|YP_002307859.1| - 0.0072 16.1 0.1 0.012 15.4 0.1 1.3 1 0 0 1 1 1 1 UBA-like domain Prefoldin_2 PF01920.20 gi|212224623|ref|YP_002307859.1| - 0.017 15.1 5.0 0.57 10.2 5.0 2.0 1 1 0 1 1 1 0 Prefoldin subunit CUE PF02845.16 gi|212224623|ref|YP_002307859.1| - 0.023 14.4 0.0 0.092 12.5 0.0 2.1 1 1 1 2 2 2 0 CUE domain Clp_N PF02861.20 gi|212224623|ref|YP_002307859.1| - 0.063 13.4 0.2 0.27 11.4 0.1 2.0 2 0 0 2 2 2 0 Clp amino terminal domain, pathogenicity island component SPT6_acidic PF14632.6 gi|212224623|ref|YP_002307859.1| - 0.086 13.4 0.0 0.16 12.6 0.0 1.5 1 0 0 1 1 1 0 Acidic N-terminal SPT6 DSBA PF01323.20 gi|212224623|ref|YP_002307859.1| - 0.099 12.4 0.8 0.19 11.5 0.8 1.4 1 1 0 1 1 1 0 DSBA-like thioredoxin domain Death PF00531.22 gi|212224623|ref|YP_002307859.1| - 0.13 12.5 0.1 2.3 8.4 0.0 2.2 2 0 0 2 2 2 0 Death domain Inhibitor_I69 PF13734.6 gi|212224623|ref|YP_002307859.1| - 0.15 12.5 0.0 0.23 11.9 0.0 1.5 1 1 0 1 1 1 0 Spi protease inhibitor UPF0154 PF03672.13 gi|212224623|ref|YP_002307859.1| - 0.26 11.3 5.5 6.1 7.0 4.2 2.2 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0154) CMD PF02627.20 gi|212224624|ref|YP_002307860.1| - 2e-19 69.4 0.2 2.8e-19 68.9 0.2 1.2 1 0 0 1 1 1 1 Carboxymuconolactone decarboxylase family HrpB1_HrpK PF09613.10 gi|212224624|ref|YP_002307860.1| - 0.049 13.3 0.1 0.085 12.5 0.1 1.5 1 0 0 1 1 1 0 Bacterial type III secretion protein (HrpB1_HrpK) GTP-bdg_N PF13167.6 gi|212224625|ref|YP_002307861.1| - 4.1e-24 85.1 2.2 6e-24 84.5 0.1 2.4 3 0 0 3 3 2 1 GTP-binding GTPase N-terminal MMR_HSR1 PF01926.23 gi|212224625|ref|YP_002307861.1| - 5.8e-21 74.7 0.2 2.2e-20 72.8 0.0 2.1 3 0 0 3 3 3 1 50S ribosome-binding GTPase GTP-bdg_M PF16360.5 gi|212224625|ref|YP_002307861.1| - 6.1e-19 68.4 6.8 1.5e-18 67.2 6.8 1.7 1 0 0 1 1 1 1 GTP-binding GTPase Middle Region FeoB_N PF02421.18 gi|212224625|ref|YP_002307861.1| - 1.2e-08 34.6 0.1 3.4e-08 33.2 0.1 1.8 1 0 0 1 1 1 1 Ferrous iron transport protein B RsgA_GTPase PF03193.16 gi|212224625|ref|YP_002307861.1| - 1.4e-07 31.6 1.3 0.021 14.8 0.0 3.0 3 0 0 3 3 3 2 RsgA GTPase Dynamin_N PF00350.23 gi|212224625|ref|YP_002307861.1| - 2.6e-06 27.6 0.1 0.00077 19.6 0.0 2.9 2 1 1 3 3 3 1 Dynamin family GTP_EFTU PF00009.27 gi|212224625|ref|YP_002307861.1| - 4.9e-05 23.0 0.1 0.0018 17.9 0.1 2.4 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain AIG1 PF04548.16 gi|212224625|ref|YP_002307861.1| - 5.6e-05 22.6 0.4 0.0011 18.3 0.0 2.6 2 1 0 2 2 2 1 AIG1 family cobW PF02492.19 gi|212224625|ref|YP_002307861.1| - 0.00043 19.9 1.1 0.087 12.4 0.1 2.6 1 1 1 2 2 2 2 CobW/HypB/UreG, nucleotide-binding domain ABC_tran PF00005.27 gi|212224625|ref|YP_002307861.1| - 0.0036 17.8 0.1 0.011 16.2 0.1 1.9 1 1 0 1 1 1 1 ABC transporter Ras PF00071.22 gi|212224625|ref|YP_002307861.1| - 0.012 15.2 0.0 0.036 13.6 0.0 1.7 1 1 0 1 1 1 0 Ras family Septin PF00735.18 gi|212224625|ref|YP_002307861.1| - 0.023 14.0 0.6 1.4 8.1 0.1 2.3 2 0 0 2 2 2 0 Septin PduV-EutP PF10662.9 gi|212224625|ref|YP_002307861.1| - 0.025 14.3 0.3 9.6 5.9 0.0 2.8 3 0 0 3 3 3 0 Ethanolamine utilisation - propanediol utilisation Arf PF00025.21 gi|212224625|ref|YP_002307861.1| - 0.033 13.6 5.2 0.035 13.6 1.4 2.8 2 2 1 3 3 3 0 ADP-ribosylation factor family Clathrin PF00637.20 gi|212224625|ref|YP_002307861.1| - 0.1 12.5 0.2 0.5 10.2 0.0 2.4 2 1 0 2 2 2 0 Region in Clathrin and VPS Roc PF08477.13 gi|212224625|ref|YP_002307861.1| - 0.11 12.7 0.1 1.2 9.4 0.1 2.3 1 1 0 1 1 1 0 Ras of Complex, Roc, domain of DAPkinase ATP_bind_1 PF03029.17 gi|212224625|ref|YP_002307861.1| - 0.11 12.2 0.1 0.71 9.6 0.0 2.2 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein PHO4 PF01384.20 gi|212224626|ref|YP_002307862.1| - 1.4e-70 238.1 38.0 5.3e-70 236.1 38.0 1.7 1 1 0 1 1 1 1 Phosphate transporter family POR PF01558.18 gi|212224627|ref|YP_002307863.1| - 6.4e-44 150.1 0.8 7.5e-44 149.9 0.8 1.0 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase MAF_flag10 PF01973.18 gi|212224627|ref|YP_002307863.1| - 0.0037 17.0 0.0 0.005 16.6 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function DUF115 Fer4 PF00037.27 gi|212224628|ref|YP_002307864.1| - 1.2e-13 50.3 18.1 3.2e-08 33.0 5.1 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|212224628|ref|YP_002307864.1| - 3e-10 40.1 8.4 4e-10 39.7 8.4 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|212224628|ref|YP_002307864.1| - 7e-10 38.5 16.3 1.1e-05 25.3 3.3 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|212224628|ref|YP_002307864.1| - 9.1e-10 39.0 22.4 4.8e-07 30.3 11.0 1.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|212224628|ref|YP_002307864.1| - 8.5e-08 32.2 23.2 1.6e-05 24.9 12.8 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|212224628|ref|YP_002307864.1| - 3.6e-07 31.0 11.4 0.00024 22.0 4.0 2.2 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_9 PF13187.6 gi|212224628|ref|YP_002307864.1| - 7e-07 29.3 21.0 2.4e-05 24.4 12.1 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|212224628|ref|YP_002307864.1| - 8e-07 28.8 11.8 0.00028 20.8 2.0 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_13 PF13370.6 gi|212224628|ref|YP_002307864.1| - 8.5e-05 23.0 10.6 0.0061 17.1 1.4 2.5 2 0 0 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_15 PF13459.6 gi|212224628|ref|YP_002307864.1| - 0.00018 22.2 9.5 0.017 15.8 2.1 2.8 3 1 0 3 3 3 2 4Fe-4S single cluster domain Fer4_17 PF13534.6 gi|212224628|ref|YP_002307864.1| - 0.0088 16.6 10.4 0.13 12.8 2.6 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|212224628|ref|YP_002307864.1| - 0.025 15.1 13.1 0.31 11.7 4.0 2.2 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_8 PF13183.6 gi|212224628|ref|YP_002307864.1| - 0.11 13.0 13.4 0.15 12.6 2.9 2.2 1 1 2 3 3 2 0 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|212224628|ref|YP_002307864.1| - 0.24 11.6 7.3 0.61 10.3 7.3 1.5 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|212224628|ref|YP_002307864.1| - 0.4 11.5 10.6 1.1 10.2 2.6 2.1 1 1 2 3 3 3 0 4Fe-4S dicluster domain POR_N PF01855.19 gi|212224629|ref|YP_002307865.1| - 1.8e-79 266.7 2.6 2.5e-79 266.3 2.6 1.2 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg PFOR_II PF17147.4 gi|212224629|ref|YP_002307865.1| - 1.6e-33 115.0 0.0 3.9e-33 113.8 0.0 1.7 1 0 0 1 1 1 1 Pyruvate:ferredoxin oxidoreductase core domain II Transketolase_C PF02780.20 gi|212224629|ref|YP_002307865.1| - 4.3e-05 23.4 0.0 0.00014 21.8 0.0 1.8 2 0 0 2 2 2 1 Transketolase, C-terminal domain Phosphonate-bd PF12974.7 gi|212224629|ref|YP_002307865.1| - 0.02 14.5 0.3 0.11 12.1 0.0 2.0 2 0 0 2 2 2 0 ABC transporter, phosphonate, periplasmic substrate-binding protein Syntaxin_2 PF14523.6 gi|212224629|ref|YP_002307865.1| - 0.026 14.9 0.0 0.069 13.5 0.0 1.6 2 0 0 2 2 2 0 Syntaxin-like protein Tenui_NS4 PF03300.13 gi|212224629|ref|YP_002307865.1| - 0.028 13.9 0.0 0.056 12.9 0.0 1.4 1 0 0 1 1 1 0 Tenuivirus non-structural, movement protein NS4 TPP_enzyme_N PF02776.18 gi|212224629|ref|YP_002307865.1| - 0.043 13.4 1.8 0.073 12.7 1.8 1.4 1 0 0 1 1 1 0 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ZnuA PF01297.17 gi|212224629|ref|YP_002307865.1| - 0.17 11.2 0.4 0.37 10.1 0.4 1.5 1 0 0 1 1 1 0 Zinc-uptake complex component A periplasmic TPP_enzyme_C PF02775.21 gi|212224630|ref|YP_002307866.1| - 7.1e-21 74.6 0.0 1e-20 74.1 0.0 1.2 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Fer4 PF00037.27 gi|212224631|ref|YP_002307867.1| - 1e-14 53.6 15.9 2.2e-08 33.5 5.4 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|212224631|ref|YP_002307867.1| - 1.1e-13 50.6 14.0 9e-07 28.7 3.0 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|212224631|ref|YP_002307867.1| - 5e-11 42.6 6.1 6.9e-11 42.1 6.1 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|212224631|ref|YP_002307867.1| - 1.3e-09 37.6 12.1 0.00016 21.5 3.1 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|212224631|ref|YP_002307867.1| - 8.5e-08 32.7 9.9 1.9e-07 31.6 10.0 1.5 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|212224631|ref|YP_002307867.1| - 4.3e-07 29.9 21.6 3.1e-05 24.0 11.8 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|212224631|ref|YP_002307867.1| - 5.1e-07 30.5 8.0 0.0012 19.7 2.9 2.3 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_9 PF13187.6 gi|212224631|ref|YP_002307867.1| - 2e-06 27.9 18.1 5.8e-05 23.2 10.8 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|212224631|ref|YP_002307867.1| - 1.5e-05 25.1 12.4 0.0018 18.6 1.3 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_22 PF17179.4 gi|212224631|ref|YP_002307867.1| - 0.00063 20.5 3.2 0.12 13.2 0.2 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|212224631|ref|YP_002307867.1| - 0.0026 18.5 9.2 0.14 12.9 2.9 2.6 2 1 0 2 2 2 2 4Fe-4S single cluster domain Fer4_8 PF13183.6 gi|212224631|ref|YP_002307867.1| - 0.0049 17.3 11.8 0.19 12.2 3.3 2.2 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|212224631|ref|YP_002307867.1| - 0.0049 17.4 11.4 0.33 11.5 2.6 2.2 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|212224631|ref|YP_002307867.1| - 0.12 12.9 13.0 0.53 10.9 1.9 2.4 1 1 1 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_3 PF12798.7 gi|212224631|ref|YP_002307867.1| - 9.7 7.4 16.5 11 7.2 4.8 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain POR_N PF01855.19 gi|212224632|ref|YP_002307868.1| - 2.8e-79 266.1 0.1 3.7e-79 265.7 0.1 1.1 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg PFOR_II PF17147.4 gi|212224632|ref|YP_002307868.1| - 6.9e-30 103.4 0.1 1.3e-29 102.5 0.1 1.5 1 0 0 1 1 1 1 Pyruvate:ferredoxin oxidoreductase core domain II Transketolase_C PF02780.20 gi|212224632|ref|YP_002307868.1| - 2.6e-06 27.3 0.3 6.8e-06 26.0 0.1 1.8 2 0 0 2 2 2 1 Transketolase, C-terminal domain PRA-PH PF01503.17 gi|212224632|ref|YP_002307868.1| - 0.15 12.5 0.9 1.1 9.8 0.1 2.6 2 0 0 2 2 2 0 Phosphoribosyl-ATP pyrophosphohydrolase TPP_enzyme_C PF02775.21 gi|212224633|ref|YP_002307869.1| - 5.8e-26 91.1 2.0 6.1e-26 91.0 0.5 1.8 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Bact_lectin PF18483.1 gi|212224633|ref|YP_002307869.1| - 0.19 11.7 0.0 0.26 11.3 0.0 1.2 1 0 0 1 1 1 0 Bacterial lectin DXP_synthase_N PF13292.6 gi|212224633|ref|YP_002307869.1| - 0.24 10.6 0.3 0.48 9.6 0.2 1.4 2 0 0 2 2 2 0 1-deoxy-D-xylulose-5-phosphate synthase ParA PF10609.9 gi|212224634|ref|YP_002307870.1| - 1.4e-96 322.7 0.6 1.8e-96 322.4 0.6 1.1 1 0 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase CbiA PF01656.23 gi|212224634|ref|YP_002307870.1| - 8.8e-15 54.9 0.0 2.8e-14 53.3 0.0 1.8 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|212224634|ref|YP_002307870.1| - 4.5e-13 49.5 0.5 3.6e-12 46.6 0.5 2.0 1 1 0 1 1 1 1 AAA domain MipZ PF09140.11 gi|212224634|ref|YP_002307870.1| - 1.7e-07 30.8 0.6 1.7e-06 27.5 0.6 2.1 1 1 0 1 1 1 1 ATPase MipZ AAA_25 PF13481.6 gi|212224634|ref|YP_002307870.1| - 3.2e-06 26.9 0.1 1.1e-05 25.1 0.0 1.8 2 0 0 2 2 2 1 AAA domain ArsA_ATPase PF02374.15 gi|212224634|ref|YP_002307870.1| - 6.9e-06 25.5 3.0 6.2e-05 22.3 0.3 2.4 2 1 0 2 2 2 1 Anion-transporting ATPase Fer4_NifH PF00142.18 gi|212224634|ref|YP_002307870.1| - 4e-05 23.2 1.1 0.00015 21.3 1.1 1.9 1 1 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family APS_kinase PF01583.20 gi|212224634|ref|YP_002307870.1| - 0.00025 21.0 0.0 0.0004 20.3 0.0 1.3 1 0 0 1 1 1 1 Adenylylsulphate kinase CLP1_P PF16575.5 gi|212224634|ref|YP_002307870.1| - 0.0028 17.5 0.0 0.0054 16.6 0.0 1.7 1 1 0 1 1 1 1 mRNA cleavage and polyadenylation factor CLP1 P-loop PhnA_Zn_Ribbon PF08274.12 gi|212224634|ref|YP_002307870.1| - 0.0054 16.7 0.1 0.008 16.1 0.1 1.3 1 0 0 1 1 1 1 PhnA Zinc-Ribbon VirC1 PF07015.11 gi|212224634|ref|YP_002307870.1| - 0.0074 15.6 0.1 0.014 14.7 0.1 1.4 1 0 0 1 1 1 1 VirC1 protein RsgA_GTPase PF03193.16 gi|212224634|ref|YP_002307870.1| - 0.0093 15.9 0.1 0.021 14.7 0.1 1.5 1 0 0 1 1 1 1 RsgA GTPase AAA_16 PF13191.6 gi|212224634|ref|YP_002307870.1| - 0.011 16.2 0.1 0.023 15.1 0.1 1.5 2 0 0 2 2 1 0 AAA ATPase domain MeaB PF03308.16 gi|212224634|ref|YP_002307870.1| - 0.014 14.4 0.4 0.031 13.2 0.1 1.7 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB DnaB_C PF03796.15 gi|212224634|ref|YP_002307870.1| - 0.015 14.6 0.0 0.026 13.9 0.0 1.3 1 0 0 1 1 1 0 DnaB-like helicase C terminal domain CBP_BcsQ PF06564.12 gi|212224634|ref|YP_002307870.1| - 0.019 14.5 0.3 0.075 12.5 0.3 1.9 1 1 0 1 1 1 0 Cellulose biosynthesis protein BcsQ DAP3 PF10236.9 gi|212224634|ref|YP_002307870.1| - 0.026 13.7 0.1 0.041 13.1 0.1 1.2 1 0 0 1 1 1 0 Mitochondrial ribosomal death-associated protein 3 AAA_18 PF13238.6 gi|212224634|ref|YP_002307870.1| - 0.028 15.0 0.0 0.074 13.6 0.0 1.7 1 0 0 1 1 1 0 AAA domain SRP54 PF00448.22 gi|212224634|ref|YP_002307870.1| - 0.042 13.5 0.2 0.1 12.2 0.2 1.6 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain RecA PF00154.21 gi|212224634|ref|YP_002307870.1| - 0.043 13.3 0.1 0.11 12.0 0.0 1.6 2 0 0 2 2 2 0 recA bacterial DNA recombination protein TIP49 PF06068.13 gi|212224634|ref|YP_002307870.1| - 0.048 12.9 0.1 0.081 12.1 0.1 1.3 1 0 0 1 1 1 0 TIP49 P-loop domain NTPase_1 PF03266.15 gi|212224634|ref|YP_002307870.1| - 0.063 13.2 0.8 0.14 12.1 0.1 1.9 2 0 0 2 2 2 0 NTPase PhoH PF02562.16 gi|212224634|ref|YP_002307870.1| - 0.065 12.7 0.1 0.2 11.1 0.0 1.8 2 0 0 2 2 2 0 PhoH-like protein zinc_ribbon_2 PF13240.6 gi|212224634|ref|YP_002307870.1| - 0.091 12.5 0.2 0.15 11.8 0.2 1.3 1 0 0 1 1 1 0 zinc-ribbon domain RNA_helicase PF00910.22 gi|212224634|ref|YP_002307870.1| - 0.093 13.1 0.0 0.23 11.9 0.0 1.7 1 0 0 1 1 1 0 RNA helicase KTI12 PF08433.10 gi|212224634|ref|YP_002307870.1| - 0.097 12.1 0.0 0.17 11.3 0.0 1.3 1 0 0 1 1 1 0 Chromatin associated protein KTI12 NB-ARC PF00931.22 gi|212224634|ref|YP_002307870.1| - 0.13 11.5 0.2 0.28 10.3 0.1 1.6 2 0 0 2 2 2 0 NB-ARC domain Zeta_toxin PF06414.12 gi|212224634|ref|YP_002307870.1| - 0.16 11.2 0.1 0.33 10.2 0.1 1.5 1 0 0 1 1 1 0 Zeta toxin DUF2110 PF09883.9 gi|212224636|ref|YP_002307872.1| - 3e-70 236.3 0.1 3.4e-70 236.1 0.1 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2110) YihI PF04220.12 gi|212224636|ref|YP_002307872.1| - 0.18 11.5 0.2 0.41 10.4 0.2 1.5 1 0 0 1 1 1 0 Der GTPase activator (YihI) TFIIE_alpha PF02002.17 gi|212224637|ref|YP_002307873.1| - 1.9e-24 85.5 5.0 1.9e-24 85.5 5.0 1.4 2 0 0 2 2 2 1 TFIIE alpha subunit PLC-beta_C PF08703.10 gi|212224637|ref|YP_002307873.1| - 0.00013 22.0 3.3 0.0097 15.9 0.2 2.4 2 0 0 2 2 2 2 PLC-beta C terminal TrmB PF01978.19 gi|212224637|ref|YP_002307873.1| - 0.00025 20.9 0.3 0.00056 19.8 0.3 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB GntR PF00392.21 gi|212224637|ref|YP_002307873.1| - 0.00079 19.0 0.4 0.015 14.9 0.0 2.4 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family HTH_Crp_2 PF13545.6 gi|212224637|ref|YP_002307873.1| - 0.0021 18.0 0.1 0.0046 16.9 0.1 1.5 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain Prefoldin_2 PF01920.20 gi|212224637|ref|YP_002307873.1| - 0.0026 17.7 5.6 0.17 11.8 0.0 3.1 3 0 0 3 3 3 2 Prefoldin subunit Rrf2 PF02082.20 gi|212224637|ref|YP_002307873.1| - 0.0051 17.1 0.0 0.01 16.2 0.0 1.5 1 0 0 1 1 1 1 Transcriptional regulator HTH_5 PF01022.20 gi|212224637|ref|YP_002307873.1| - 0.015 15.2 0.0 0.034 14.0 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family Phage_rep_org_N PF09681.10 gi|212224637|ref|YP_002307873.1| - 0.021 14.8 0.0 0.05 13.5 0.0 1.6 1 0 0 1 1 1 0 N-terminal phage replisome organiser (Phage_rep_org_N) HTH_9 PF08221.11 gi|212224637|ref|YP_002307873.1| - 0.027 14.5 0.0 0.052 13.7 0.0 1.4 1 0 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain Sigma70_r3 PF04539.16 gi|212224637|ref|YP_002307873.1| - 0.034 14.2 0.4 0.034 14.2 0.4 2.1 3 0 0 3 3 3 0 Sigma-70 region 3 PRA-PH PF01503.17 gi|212224637|ref|YP_002307873.1| - 0.044 14.2 1.4 1.3 9.5 0.3 2.4 2 0 0 2 2 2 0 Phosphoribosyl-ATP pyrophosphohydrolase TF_Zn_Ribbon PF08271.12 gi|212224637|ref|YP_002307873.1| - 0.062 12.8 0.1 0.13 11.8 0.1 1.6 1 0 0 1 1 1 0 TFIIB zinc-binding WAC_Acf1_DNA_bd PF10537.9 gi|212224637|ref|YP_002307873.1| - 0.082 13.4 0.1 0.34 11.4 0.1 2.1 1 1 0 1 1 1 0 ATP-utilising chromatin assembly and remodelling N-terminal HTH_IclR PF09339.10 gi|212224637|ref|YP_002307873.1| - 0.1 12.4 0.0 0.17 11.7 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain PfkB PF00294.24 gi|212224639|ref|YP_002307875.1| - 2.3e-41 142.1 0.0 3e-41 141.7 0.0 1.1 1 0 0 1 1 1 1 pfkB family carbohydrate kinase HTH_11 PF08279.12 gi|212224640|ref|YP_002307876.1| - 0.041 13.8 0.0 0.1 12.6 0.0 1.6 1 0 0 1 1 1 0 HTH domain Acylphosphatase PF00708.18 gi|212224641|ref|YP_002307877.1| - 6.4e-28 97.0 0.0 7.1e-28 96.8 0.0 1.0 1 0 0 1 1 1 1 Acylphosphatase CutA1 PF03091.15 gi|212224642|ref|YP_002307878.1| - 1.3e-31 108.4 0.8 1.4e-31 108.2 0.8 1.0 1 0 0 1 1 1 1 CutA1 divalent ion tolerance protein DUF99 PF01949.16 gi|212224643|ref|YP_002307879.1| - 2.8e-63 212.7 0.2 3.1e-63 212.5 0.2 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF99 Usp PF00582.26 gi|212224644|ref|YP_002307880.1| - 1.7e-36 125.8 0.5 5.2e-18 65.9 0.0 2.1 2 0 0 2 2 2 2 Universal stress protein family GCV_T PF01571.21 gi|212224645|ref|YP_002307881.1| - 4.2e-96 321.2 0.0 5.1e-96 321.0 0.0 1.1 1 0 0 1 1 1 1 Aminomethyltransferase folate-binding domain GCV_T_C PF08669.11 gi|212224645|ref|YP_002307881.1| - 1.7e-23 82.3 0.1 3.2e-23 81.4 0.1 1.5 1 0 0 1 1 1 1 Glycine cleavage T-protein C-terminal barrel domain EamA PF00892.20 gi|212224646|ref|YP_002307882.1| - 1e-32 113.1 29.9 9.2e-18 64.7 9.1 2.0 2 0 0 2 2 2 2 EamA-like transporter family TPT PF03151.16 gi|212224646|ref|YP_002307882.1| - 6.3 6.1 11.3 6.7 6.0 4.4 2.5 1 1 0 2 2 2 0 Triose-phosphate Transporter family FBPase_3 PF01950.16 gi|212224648|ref|YP_002307884.1| - 1.1e-186 620.2 0.0 1.3e-186 620.1 0.0 1.0 1 0 0 1 1 1 1 Fructose-1,6-bisphosphatase Biotin_lipoyl PF00364.22 gi|212224648|ref|YP_002307884.1| - 0.01 15.6 0.2 0.13 12.2 0.1 2.4 1 1 1 2 2 2 0 Biotin-requiring enzyme LAGLIDADG_WhiA PF14527.6 gi|212224648|ref|YP_002307884.1| - 0.025 14.6 0.0 0.058 13.5 0.0 1.6 1 0 0 1 1 1 0 WhiA LAGLIDADG-like domain AFOR_N PF02730.15 gi|212224649|ref|YP_002307885.1| - 9.1e-42 143.2 0.1 2.3e-41 141.9 0.0 1.7 2 0 0 2 2 2 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain AFOR_C PF01314.18 gi|212224649|ref|YP_002307885.1| - 9.2e-17 61.1 0.0 2.3e-16 59.8 0.0 1.5 1 1 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 DUF3942 PF13078.6 gi|212224649|ref|YP_002307885.1| - 0.079 13.3 0.2 0.17 12.2 0.2 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3942) DUF1560 PF07597.11 gi|212224649|ref|YP_002307885.1| - 0.11 12.5 0.0 0.24 11.5 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1560) HHH_5 PF14520.6 gi|212224649|ref|YP_002307885.1| - 0.23 12.1 3.5 0.3 11.7 0.1 2.5 2 0 0 2 2 2 0 Helix-hairpin-helix domain Prenyltrans PF00432.21 gi|212224650|ref|YP_002307886.1| - 5.6e-06 26.0 0.1 0.43 10.4 0.0 4.9 5 0 0 5 5 5 2 Prenyltransferase and squalene oxidase repeat NAD_binding_8 PF13450.6 gi|212224652|ref|YP_002307888.1| - 2.4e-14 53.3 0.1 5e-14 52.3 0.1 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Amino_oxidase PF01593.24 gi|212224652|ref|YP_002307888.1| - 3.6e-12 46.3 0.0 8e-12 45.2 0.0 1.6 1 1 0 1 1 1 1 Flavin containing amine oxidoreductase Pyr_redox_2 PF07992.14 gi|212224652|ref|YP_002307888.1| - 1.4e-09 37.6 0.7 2.2e-06 27.1 0.0 2.5 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 gi|212224652|ref|YP_002307888.1| - 6.8e-07 29.2 0.6 2.1e-06 27.6 0.6 1.8 1 1 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|212224652|ref|YP_002307888.1| - 1.4e-05 24.4 0.1 2.7e-05 23.5 0.1 1.4 1 0 0 1 1 1 1 FAD binding domain Pyr_redox PF00070.27 gi|212224652|ref|YP_002307888.1| - 6.3e-05 23.5 0.8 0.0069 16.9 0.1 3.2 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.7 gi|212224652|ref|YP_002307888.1| - 0.00031 20.2 0.1 0.0005 19.5 0.1 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase HI0933_like PF03486.14 gi|212224652|ref|YP_002307888.1| - 0.00069 18.4 0.6 0.0042 15.8 0.1 2.2 3 0 0 3 3 3 1 HI0933-like protein FAD_binding_3 PF01494.19 gi|212224652|ref|YP_002307888.1| - 0.0013 18.0 0.1 0.0026 17.1 0.1 1.5 1 0 0 1 1 1 1 FAD binding domain MCRA PF06100.11 gi|212224652|ref|YP_002307888.1| - 0.027 13.3 0.1 0.039 12.7 0.1 1.2 1 0 0 1 1 1 0 MCRA family ApbA PF02558.16 gi|212224652|ref|YP_002307888.1| - 0.077 12.6 0.2 0.25 11.0 0.2 1.9 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA Thi4 PF01946.17 gi|212224652|ref|YP_002307888.1| - 0.14 11.4 0.1 0.33 10.2 0.1 1.6 1 0 0 1 1 1 0 Thi4 family GIDA PF01134.22 gi|212224652|ref|YP_002307888.1| - 0.14 11.2 0.1 0.26 10.3 0.1 1.4 1 0 0 1 1 1 0 Glucose inhibited division protein A AA_kinase PF00696.28 gi|212224653|ref|YP_002307889.1| - 9.4e-30 104.0 0.1 1.1e-29 103.7 0.1 1.1 1 0 0 1 1 1 1 Amino acid kinase family PTS_IIB PF02302.17 gi|212224653|ref|YP_002307889.1| - 0.088 13.5 0.0 33 5.3 0.0 2.9 2 0 0 2 2 2 0 PTS system, Lactose/Cellobiose specific IIB subunit SKI PF01202.22 gi|212224653|ref|YP_002307889.1| - 0.14 12.2 0.2 5.3 7.1 0.0 2.5 2 0 0 2 2 2 0 Shikimate kinase SDH_sah PF01972.16 gi|212224654|ref|YP_002307890.1| - 1.7e-150 499.8 0.1 1.8e-150 499.7 0.1 1.0 1 0 0 1 1 1 1 Serine dehydrogenase proteinase CLP_protease PF00574.23 gi|212224654|ref|YP_002307890.1| - 1.2e-06 28.6 0.2 3.4e-06 27.1 0.0 1.7 2 0 0 2 2 2 1 Clp protease ECH_1 PF00378.20 gi|212224654|ref|YP_002307890.1| - 0.00081 18.8 0.0 0.0011 18.3 0.0 1.3 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase Peptidase_S49 PF01343.18 gi|212224654|ref|YP_002307890.1| - 0.0034 17.3 0.0 0.0073 16.3 0.0 1.5 1 0 0 1 1 1 1 Peptidase family S49 MASE2 PF05230.11 gi|212224654|ref|YP_002307890.1| - 0.17 11.9 1.2 0.26 11.4 0.2 1.8 2 0 0 2 2 2 0 MASE2 domain MscS_porin PF12795.7 gi|212224655|ref|YP_002307891.1| - 1.8e-05 24.4 39.8 0.024 14.2 18.2 3.5 1 1 2 3 3 3 2 Mechanosensitive ion channel porin domain WXG100 PF06013.12 gi|212224655|ref|YP_002307891.1| - 0.00033 20.8 12.5 0.53 10.6 2.7 4.7 3 1 1 4 4 4 1 Proteins of 100 residues with WXG Occludin_ELL PF07303.13 gi|212224655|ref|YP_002307891.1| - 0.00083 20.0 37.0 0.78 10.5 11.6 3.8 2 1 2 4 4 4 4 Occludin homology domain AAA_13 PF13166.6 gi|212224655|ref|YP_002307891.1| - 0.001 17.9 27.5 0.001 17.9 27.5 2.1 1 1 1 2 2 2 2 AAA domain EzrA PF06160.12 gi|212224655|ref|YP_002307891.1| - 0.0011 17.2 46.9 0.032 12.4 30.8 2.2 1 1 1 2 2 2 2 Septation ring formation regulator, EzrA DUF4407 PF14362.6 gi|212224655|ref|YP_002307891.1| - 0.0015 17.9 12.5 0.0015 17.9 12.5 2.2 1 1 1 2 2 2 1 Domain of unknown function (DUF4407) DUF1664 PF07889.12 gi|212224655|ref|YP_002307891.1| - 0.0019 18.2 30.0 0.2 11.7 8.5 3.8 1 1 1 3 3 3 2 Protein of unknown function (DUF1664) Laminin_I PF06008.14 gi|212224655|ref|YP_002307891.1| - 0.0019 17.9 11.5 0.0019 17.9 11.5 2.5 1 1 0 2 2 2 1 Laminin Domain I Seryl_tRNA_N PF02403.22 gi|212224655|ref|YP_002307891.1| - 0.0028 17.9 48.6 0.003 17.8 15.0 4.3 1 1 1 4 4 3 1 Seryl-tRNA synthetase N-terminal domain FlgN PF05130.12 gi|212224655|ref|YP_002307891.1| - 0.0093 16.5 7.7 0.0093 16.5 7.7 3.4 1 1 3 4 4 3 1 FlgN protein DUF4140 PF13600.6 gi|212224655|ref|YP_002307891.1| - 0.012 16.0 38.7 0.057 13.9 2.4 5.3 3 1 1 4 4 4 0 N-terminal domain of unknown function (DUF4140) Laminin_II PF06009.12 gi|212224655|ref|YP_002307891.1| - 0.012 15.6 30.4 0.18 11.8 2.6 4.0 1 1 3 4 4 4 0 Laminin Domain II APG6_N PF17675.1 gi|212224655|ref|YP_002307891.1| - 0.013 16.0 19.2 0.013 16.0 19.2 4.3 1 1 3 4 4 4 0 Apg6 coiled-coil region PspA_IM30 PF04012.12 gi|212224655|ref|YP_002307891.1| - 0.015 14.9 45.1 0.012 15.2 20.7 3.5 1 1 0 2 2 2 0 PspA/IM30 family Prefoldin_2 PF01920.20 gi|212224655|ref|YP_002307891.1| - 0.015 15.3 53.7 0.03 14.3 4.9 6.2 2 1 4 6 6 6 0 Prefoldin subunit ATG16 PF08614.11 gi|212224655|ref|YP_002307891.1| - 0.058 13.6 38.0 0.039 14.2 11.7 2.8 1 1 1 2 2 2 0 Autophagy protein 16 (ATG16) Filament PF00038.21 gi|212224655|ref|YP_002307891.1| - 0.11 12.0 47.7 1.2 8.6 6.5 3.7 1 1 1 2 2 2 0 Intermediate filament protein T3SSipB PF16535.5 gi|212224655|ref|YP_002307891.1| - 0.14 12.6 21.8 0.11 12.9 8.7 3.4 1 1 2 3 3 3 0 Type III cell invasion protein SipB Sec34 PF04136.15 gi|212224655|ref|YP_002307891.1| - 0.15 11.9 21.3 1.3 8.8 1.4 3.6 2 2 1 3 3 3 0 Sec34-like family CENP-F_leu_zip PF10473.9 gi|212224655|ref|YP_002307891.1| - 0.16 12.0 52.4 2.8 8.0 17.8 3.8 1 1 2 3 3 3 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DUF5082 PF16888.5 gi|212224655|ref|YP_002307891.1| - 0.16 12.2 37.9 2.2 8.6 1.8 4.7 2 1 2 4 4 4 0 Domain of unknown function (DUF5082) CENP-H PF05837.12 gi|212224655|ref|YP_002307891.1| - 0.16 12.4 44.9 1.2 9.6 7.4 4.2 2 2 2 4 4 4 0 Centromere protein H (CENP-H) Syntaxin-6_N PF09177.11 gi|212224655|ref|YP_002307891.1| - 0.17 12.5 29.0 0.2 12.2 5.5 4.4 1 1 2 3 3 3 0 Syntaxin 6, N-terminal Snapin_Pallidin PF14712.6 gi|212224655|ref|YP_002307891.1| - 0.18 12.2 39.9 0.47 10.9 11.3 4.5 1 1 3 4 4 4 0 Snapin/Pallidin TMPIT PF07851.13 gi|212224655|ref|YP_002307891.1| - 0.18 11.0 36.3 0.15 11.3 11.6 2.8 1 1 2 3 3 3 0 TMPIT-like protein LPP PF04728.13 gi|212224655|ref|YP_002307891.1| - 0.19 12.1 15.7 4.7 7.7 1.9 5.2 3 1 2 5 5 5 0 Lipoprotein leucine-zipper DUF724 PF05266.14 gi|212224655|ref|YP_002307891.1| - 0.24 11.2 45.2 0.07 13.0 16.8 3.0 1 1 0 2 2 2 0 Protein of unknown function (DUF724) Atg14 PF10186.9 gi|212224655|ref|YP_002307891.1| - 0.28 10.2 51.1 0.14 11.3 19.4 3.2 1 1 2 3 3 3 0 Vacuolar sorting 38 and autophagy-related subunit 14 MCPsignal PF00015.21 gi|212224655|ref|YP_002307891.1| - 0.33 10.8 15.4 0.41 10.4 3.4 2.9 2 1 0 3 3 3 0 Methyl-accepting chemotaxis protein (MCP) signalling domain FH2 PF02181.23 gi|212224655|ref|YP_002307891.1| - 0.34 10.0 30.2 0.14 11.3 13.2 2.8 1 1 1 3 3 3 0 Formin Homology 2 Domain DUF4200 PF13863.6 gi|212224655|ref|YP_002307891.1| - 0.47 10.9 63.6 1.4 9.4 21.8 3.9 2 2 2 4 4 4 0 Domain of unknown function (DUF4200) Fez1 PF06818.15 gi|212224655|ref|YP_002307891.1| - 0.49 10.8 44.9 1.4 9.4 7.5 2.9 1 1 1 2 2 2 0 Fez1 DUF948 PF06103.11 gi|212224655|ref|YP_002307891.1| - 0.56 10.5 13.8 5.3 7.4 3.4 3.9 2 2 2 4 4 4 0 Bacterial protein of unknown function (DUF948) NPV_P10 PF05531.12 gi|212224655|ref|YP_002307891.1| - 0.66 10.5 22.1 10 6.7 0.1 4.9 1 1 2 3 3 2 0 Nucleopolyhedrovirus P10 protein Spc7 PF08317.11 gi|212224655|ref|YP_002307891.1| - 0.68 8.8 51.8 1.9 7.3 21.8 3.0 1 1 2 3 3 3 0 Spc7 kinetochore protein FapA PF03961.13 gi|212224655|ref|YP_002307891.1| - 0.83 8.2 47.9 0.041 12.5 17.6 3.3 1 1 2 3 3 3 0 Flagellar Assembly Protein A GAS PF13851.6 gi|212224655|ref|YP_002307891.1| - 0.89 8.9 57.8 0.44 9.9 13.3 3.9 1 1 3 4 4 4 0 Growth-arrest specific micro-tubule binding TPR_MLP1_2 PF07926.12 gi|212224655|ref|YP_002307891.1| - 0.96 9.5 47.9 6.8 6.8 15.6 4.4 1 1 3 4 4 4 0 TPR/MLP1/MLP2-like protein Syntaxin PF00804.25 gi|212224655|ref|YP_002307891.1| - 1 9.0 39.4 2.4 7.8 14.9 3.4 1 1 1 3 3 3 0 Syntaxin GCN5L1 PF06320.13 gi|212224655|ref|YP_002307891.1| - 1.1 9.4 32.4 2.4 8.3 3.1 4.3 2 2 1 4 4 4 0 GCN5-like protein 1 (GCN5L1) DUF5344 PF17279.2 gi|212224655|ref|YP_002307891.1| - 1.1 9.8 20.0 2.6 8.7 5.0 4.6 3 1 1 4 4 4 0 Family of unknown function (DUF5344) DUF3450 PF11932.8 gi|212224655|ref|YP_002307891.1| - 1.2 8.4 37.4 0.096 12.0 11.3 3.2 1 1 0 2 2 2 0 Protein of unknown function (DUF3450) ZapB PF06005.12 gi|212224655|ref|YP_002307891.1| - 1.9 9.0 58.5 7.1 7.2 7.5 6.0 2 2 3 5 5 4 0 Cell division protein ZapB ERM PF00769.19 gi|212224655|ref|YP_002307891.1| - 2.1 8.1 54.1 0.71 9.6 11.8 3.2 1 1 2 3 3 3 0 Ezrin/radixin/moesin family YabA PF06156.13 gi|212224655|ref|YP_002307891.1| - 2.3 8.9 40.0 8.5 7.1 5.8 4.3 1 1 3 4 4 4 0 Initiation control protein YabA DUF3584 PF12128.8 gi|212224655|ref|YP_002307891.1| - 2.3 5.6 45.4 8.7 3.7 21.6 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF3584) OmpH PF03938.14 gi|212224655|ref|YP_002307891.1| - 2.4 8.5 57.2 0.79 10.1 20.8 3.7 1 1 2 3 3 3 0 Outer membrane protein (OmpH-like) Fib_alpha PF08702.10 gi|212224655|ref|YP_002307891.1| - 2.5 8.3 37.0 5.8 7.1 12.5 3.4 1 1 2 3 3 3 0 Fibrinogen alpha/beta chain family HAUS-augmin3 PF14932.6 gi|212224655|ref|YP_002307891.1| - 3.1 7.3 37.7 0.56 9.7 12.6 3.1 1 1 3 4 4 4 0 HAUS augmin-like complex subunit 3 Tropomyosin_1 PF12718.7 gi|212224655|ref|YP_002307891.1| - 3.1 7.9 56.3 1.9 8.6 14.4 4.8 2 1 3 5 5 5 0 Tropomyosin like GldM_N PF12081.8 gi|212224655|ref|YP_002307891.1| - 3.8 7.6 29.8 2 8.5 11.2 2.9 1 1 0 2 2 2 0 GldM N-terminal domain SpecificRecomb PF10136.9 gi|212224655|ref|YP_002307891.1| - 5.2 5.2 16.4 2.1 6.5 7.8 2.1 1 1 1 2 2 2 0 Site-specific recombinase FlaC_arch PF05377.11 gi|212224655|ref|YP_002307891.1| - 6.7 7.2 32.0 0.59 10.6 2.1 5.5 1 1 6 7 7 7 0 Flagella accessory protein C (FlaC) Fic PF02661.18 gi|212224655|ref|YP_002307891.1| - 6.9 7.6 10.6 17 6.4 0.6 3.7 2 1 1 3 3 3 0 Fic/DOC family FUSC PF04632.12 gi|212224655|ref|YP_002307891.1| - 7 5.0 11.8 2.4 6.6 2.6 2.2 1 1 0 2 2 2 0 Fusaric acid resistance protein family KASH_CCD PF14662.6 gi|212224655|ref|YP_002307891.1| - 7.5 6.3 51.9 14 5.5 17.9 2.4 1 1 2 3 3 3 0 Coiled-coil region of CCDC155 or KASH HOOK PF05622.12 gi|212224655|ref|YP_002307891.1| - 8.7 4.3 49.9 25 2.8 23.9 2.2 1 1 0 1 1 1 0 HOOK protein 5_nucleotid PF05761.14 gi|212224655|ref|YP_002307891.1| - 9.7 5.0 32.7 5.1 5.9 8.9 3.1 1 1 2 3 3 3 0 5' nucleotidase family DUF5591 PF17884.1 gi|212224656|ref|YP_002307892.1| - 5.5e-52 175.7 0.1 9.8e-52 174.9 0.1 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF5591) PUA PF01472.20 gi|212224656|ref|YP_002307892.1| - 1.3e-11 44.3 2.7 3e-11 43.1 2.7 1.6 1 0 0 1 1 1 1 PUA domain TGT_C2 PF14810.6 gi|212224656|ref|YP_002307892.1| - 8.1e-05 22.7 0.1 0.00016 21.7 0.1 1.5 1 0 0 1 1 1 1 Patch-forming domain C2 of tRNA-guanine transglycosylase TGT PF01702.18 gi|212224656|ref|YP_002307892.1| - 0.19 10.9 0.0 0.46 9.6 0.0 1.7 1 1 0 1 1 1 0 Queuine tRNA-ribosyltransferase Piwi PF02171.17 gi|212224657|ref|YP_002307893.1| - 3.3e-12 46.3 0.8 6e-12 45.4 0.8 1.5 1 0 0 1 1 1 1 Piwi domain DUF2103 PF09876.9 gi|212224658|ref|YP_002307894.1| - 3e-21 75.2 0.0 3.3e-21 75.1 0.0 1.0 1 0 0 1 1 1 1 Predicted metal-binding protein (DUF2103) RNA_Me_trans PF04252.13 gi|212224659|ref|YP_002307895.1| - 2.8e-47 160.9 0.0 3.3e-47 160.7 0.0 1.0 1 0 0 1 1 1 1 Predicted SAM-dependent RNA methyltransferase Methyltransf_11 PF08241.12 gi|212224660|ref|YP_002307896.1| - 3.3e-24 85.4 0.0 6e-24 84.5 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|212224660|ref|YP_002307896.1| - 9.9e-21 74.3 0.0 1.4e-20 73.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|212224660|ref|YP_002307896.1| - 4.4e-20 72.2 0.0 7.7e-20 71.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|212224660|ref|YP_002307896.1| - 2.5e-16 59.7 0.0 3.4e-16 59.3 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_31 PF13847.6 gi|212224660|ref|YP_002307896.1| - 8.1e-16 58.2 0.0 1.2e-15 57.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|212224660|ref|YP_002307896.1| - 3.4e-14 53.4 0.0 5.2e-14 52.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_29 PF03141.16 gi|212224660|ref|YP_002307896.1| - 0.0031 16.1 0.0 0.0044 15.6 0.0 1.1 1 0 0 1 1 1 1 Putative S-adenosyl-L-methionine-dependent methyltransferase UPF0020 PF01170.18 gi|212224660|ref|YP_002307896.1| - 0.0074 16.0 0.0 0.014 15.1 0.0 1.5 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 MetW PF07021.12 gi|212224660|ref|YP_002307896.1| - 0.036 13.6 0.0 0.059 13.0 0.0 1.3 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW DUF2194 PF09960.9 gi|212224660|ref|YP_002307896.1| - 0.051 11.9 0.0 0.071 11.4 0.0 1.1 1 0 0 1 1 1 0 Uncharacterised protein conserved in bacteria (DUF2194) Methyltransf_8 PF05148.15 gi|212224660|ref|YP_002307896.1| - 0.071 12.9 0.0 0.11 12.3 0.0 1.3 1 0 0 1 1 1 0 Hypothetical methyltransferase HTH_AsnC-type PF13404.6 gi|212224661|ref|YP_002307897.1| - 3.4e-14 52.4 0.7 5.2e-14 51.8 0.7 1.3 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.6 gi|212224661|ref|YP_002307897.1| - 4.2e-14 51.8 0.2 7.1e-14 51.1 0.2 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding AsnC_trans_reg PF01037.21 gi|212224661|ref|YP_002307897.1| - 1.4e-13 50.6 0.0 2.5e-13 49.8 0.0 1.4 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain HTH_11 PF08279.12 gi|212224661|ref|YP_002307897.1| - 3.3e-08 33.3 0.1 5.3e-08 32.7 0.1 1.4 1 0 0 1 1 1 1 HTH domain HTH_20 PF12840.7 gi|212224661|ref|YP_002307897.1| - 1.3e-07 31.6 0.0 2.4e-07 30.7 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|212224661|ref|YP_002307897.1| - 4.5e-05 23.3 0.0 0.00012 21.9 0.1 1.6 2 0 0 2 2 2 1 MarR family Sigma70_r4 PF04545.16 gi|212224661|ref|YP_002307897.1| - 6.8e-05 22.3 0.1 0.00013 21.4 0.1 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_Mga PF08280.11 gi|212224661|ref|YP_002307897.1| - 0.00016 21.7 0.0 0.00028 20.8 0.0 1.4 1 0 0 1 1 1 1 M protein trans-acting positive regulator (MGA) HTH domain HTH_IclR PF09339.10 gi|212224661|ref|YP_002307897.1| - 0.00028 20.6 0.0 0.00047 19.9 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain HxlR PF01638.17 gi|212224661|ref|YP_002307897.1| - 0.0003 20.6 0.0 0.00053 19.8 0.0 1.5 1 1 0 1 1 1 1 HxlR-like helix-turn-helix MarR PF01047.22 gi|212224661|ref|YP_002307897.1| - 0.0004 20.3 0.0 0.0018 18.2 0.0 1.9 2 0 0 2 2 2 1 MarR family HTH_DeoR PF08220.12 gi|212224661|ref|YP_002307897.1| - 0.00048 19.8 0.3 0.00079 19.1 0.3 1.3 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_28 PF13518.6 gi|212224661|ref|YP_002307897.1| - 0.0009 19.3 0.0 0.0016 18.5 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.6 gi|212224661|ref|YP_002307897.1| - 0.0011 18.7 0.1 0.0018 18.0 0.1 1.4 1 0 0 1 1 1 1 Homeodomain-like domain HTH_5 PF01022.20 gi|212224661|ref|YP_002307897.1| - 0.0011 18.8 0.0 0.0018 18.1 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family Sigma70_r4_2 PF08281.12 gi|212224661|ref|YP_002307897.1| - 0.0011 18.5 0.1 0.003 17.2 0.1 1.7 1 1 0 1 1 1 1 Sigma-70, region 4 HTH_Crp_2 PF13545.6 gi|212224661|ref|YP_002307897.1| - 0.0018 18.2 0.1 0.003 17.5 0.1 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain TFIIE_alpha PF02002.17 gi|212224661|ref|YP_002307897.1| - 0.0024 17.7 0.1 0.044 13.6 0.1 2.0 1 1 1 2 2 2 1 TFIIE alpha subunit Rrf2 PF02082.20 gi|212224661|ref|YP_002307897.1| - 0.0035 17.7 0.0 0.0091 16.3 0.0 1.7 2 0 0 2 2 1 1 Transcriptional regulator RepL PF05732.11 gi|212224661|ref|YP_002307897.1| - 0.0045 16.4 0.2 0.0096 15.4 0.0 1.6 2 0 0 2 2 2 1 Firmicute plasmid replication protein (RepL) HTH_27 PF13463.6 gi|212224661|ref|YP_002307897.1| - 0.0077 16.7 0.1 0.013 16.0 0.1 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain TrmB PF01978.19 gi|212224661|ref|YP_002307897.1| - 0.0084 16.0 0.2 0.032 14.1 0.1 1.9 1 1 1 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_12 PF08461.10 gi|212224661|ref|YP_002307897.1| - 0.015 15.2 0.0 0.046 13.7 0.0 1.8 1 0 0 1 1 1 0 Ribonuclease R winged-helix domain DUF4423 PF14394.6 gi|212224661|ref|YP_002307897.1| - 0.022 14.5 0.0 0.065 12.9 0.0 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4423) DUF2774 PF11242.8 gi|212224661|ref|YP_002307897.1| - 0.026 14.7 0.0 0.048 13.9 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2774) HTH_Tnp_ISL3 PF13542.6 gi|212224661|ref|YP_002307897.1| - 0.029 13.8 0.1 0.048 13.1 0.1 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 FaeA PF04703.12 gi|212224661|ref|YP_002307897.1| - 0.034 14.5 0.1 0.057 13.8 0.1 1.3 1 0 0 1 1 1 0 FaeA-like protein HTH_29 PF13551.6 gi|212224661|ref|YP_002307897.1| - 0.044 13.8 0.0 0.071 13.1 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn helix HTH_50 PF18024.1 gi|212224661|ref|YP_002307897.1| - 0.05 13.2 0.0 0.28 10.8 0.0 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_1 PF00126.27 gi|212224661|ref|YP_002307897.1| - 0.053 13.5 0.0 0.098 12.6 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_36 PF13730.6 gi|212224661|ref|YP_002307897.1| - 0.063 13.2 0.0 0.12 12.3 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain LexA_DNA_bind PF01726.16 gi|212224661|ref|YP_002307897.1| - 0.081 12.7 0.0 0.15 11.9 0.0 1.5 1 0 0 1 1 1 0 LexA DNA binding domain HTH_10 PF04967.12 gi|212224661|ref|YP_002307897.1| - 0.088 12.6 0.2 0.23 11.3 0.0 1.7 2 0 0 2 2 1 0 HTH DNA binding domain DUF2805 PF10985.8 gi|212224661|ref|YP_002307897.1| - 0.11 12.9 0.1 0.19 12.1 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2805) HTH_9 PF08221.11 gi|212224661|ref|YP_002307897.1| - 0.12 12.5 0.0 0.21 11.7 0.0 1.4 1 0 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain P22_Cro PF14549.6 gi|212224661|ref|YP_002307897.1| - 0.13 12.1 0.1 0.25 11.2 0.1 1.4 1 0 0 1 1 1 0 DNA-binding transcriptional regulator Cro Mga PF05043.13 gi|212224661|ref|YP_002307897.1| - 0.16 12.5 0.0 0.36 11.4 0.0 1.5 2 0 0 2 2 1 0 Mga helix-turn-helix domain tRNA_U5-meth_tr PF05958.11 gi|212224662|ref|YP_002307898.1| - 4.1e-25 88.5 0.1 1.9e-22 79.8 0.1 2.2 1 1 0 1 1 1 1 tRNA (Uracil-5-)-methyltransferase MTS PF05175.14 gi|212224662|ref|YP_002307898.1| - 4.1e-09 36.2 0.0 6.6e-09 35.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Met_10 PF02475.16 gi|212224662|ref|YP_002307898.1| - 6.9e-09 35.7 0.0 1.3e-08 34.9 0.0 1.5 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_31 PF13847.6 gi|212224662|ref|YP_002307898.1| - 1.4e-06 28.2 0.0 2.4e-06 27.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.13 gi|212224662|ref|YP_002307898.1| - 5e-05 22.8 0.0 7.2e-05 22.3 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_23 PF13489.6 gi|212224662|ref|YP_002307898.1| - 8.7e-05 22.4 0.0 0.00022 21.1 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.15 gi|212224662|ref|YP_002307898.1| - 0.00016 21.3 0.0 0.00026 20.7 0.0 1.2 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_25 PF13649.6 gi|212224662|ref|YP_002307898.1| - 0.00023 21.8 0.0 0.00069 20.3 0.0 1.9 2 0 0 2 2 1 1 Methyltransferase domain TehB PF03848.14 gi|212224662|ref|YP_002307898.1| - 0.00028 20.4 0.0 0.00042 19.8 0.0 1.3 1 0 0 1 1 1 1 Tellurite resistance protein TehB Methyltransf_15 PF09445.10 gi|212224662|ref|YP_002307898.1| - 0.0016 18.0 0.0 0.0036 16.9 0.0 1.6 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase PCMT PF01135.19 gi|212224662|ref|YP_002307898.1| - 0.01 15.6 0.0 0.015 15.1 0.0 1.2 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) N6_N4_Mtase PF01555.18 gi|212224662|ref|YP_002307898.1| - 0.15 11.8 0.0 0.24 11.1 0.0 1.4 1 0 0 1 1 1 0 DNA methylase TrmB PF01978.19 gi|212224663|ref|YP_002307899.1| - 0.0003 20.6 0.3 0.00034 20.4 0.3 1.1 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.7 gi|212224663|ref|YP_002307899.1| - 0.00072 19.6 0.0 0.00096 19.2 0.0 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain Fe_dep_repress PF01325.19 gi|212224663|ref|YP_002307899.1| - 0.0016 18.6 0.5 0.0025 18.0 0.1 1.5 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain Rrf2 PF02082.20 gi|212224663|ref|YP_002307899.1| - 0.0029 17.9 0.1 0.0032 17.8 0.1 1.1 1 0 0 1 1 1 1 Transcriptional regulator HTH_IclR PF09339.10 gi|212224663|ref|YP_002307899.1| - 0.084 12.7 0.1 0.11 12.3 0.1 1.1 1 0 0 1 1 1 0 IclR helix-turn-helix domain MarR_2 PF12802.7 gi|212224663|ref|YP_002307899.1| - 0.088 12.7 0.0 0.1 12.5 0.0 1.2 1 0 0 1 1 1 0 MarR family Pribosyltran PF00156.27 gi|212224664|ref|YP_002307900.1| - 1.1e-22 80.3 1.2 1.3e-22 80.0 1.2 1.1 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 gi|212224664|ref|YP_002307900.1| - 0.0049 16.3 0.1 0.0067 15.9 0.1 1.2 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase DUF2529 PF10740.9 gi|212224664|ref|YP_002307900.1| - 0.011 15.4 0.0 0.019 14.6 0.0 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF2529) PDZ_6 PF17820.1 gi|212224664|ref|YP_002307900.1| - 0.053 13.4 0.2 0.095 12.6 0.2 1.4 1 0 0 1 1 1 0 PDZ domain DNA_ligase_A_M PF01068.21 gi|212224666|ref|YP_002307902.1| - 1e-65 221.2 0.4 1.7e-65 220.5 0.4 1.4 1 0 0 1 1 1 1 ATP dependent DNA ligase domain DNA_ligase_A_N PF04675.14 gi|212224666|ref|YP_002307902.1| - 1.9e-37 129.3 0.6 4.4e-37 128.0 0.3 1.8 1 1 1 2 2 2 1 DNA ligase N terminus DNA_ligase_A_C PF04679.15 gi|212224666|ref|YP_002307902.1| - 9.2e-21 74.3 0.0 4.6e-20 72.0 0.0 2.3 1 1 0 1 1 1 1 ATP dependent DNA ligase C terminal region RNA_ligase PF09414.10 gi|212224666|ref|YP_002307902.1| - 9.4e-06 26.0 0.5 1.6e-05 25.3 0.5 1.4 1 0 0 1 1 1 1 RNA ligase DNA_ligase_OB_2 PF14743.6 gi|212224666|ref|YP_002307902.1| - 0.0022 18.0 0.0 0.0096 15.9 0.0 2.2 1 1 0 1 1 1 1 DNA ligase OB-like domain TPR_1 PF00515.28 gi|212224666|ref|YP_002307902.1| - 0.024 14.4 0.2 0.08 12.8 0.2 1.9 1 0 0 1 1 1 0 Tetratricopeptide repeat NES_C_h PF18208.1 gi|212224666|ref|YP_002307902.1| - 0.066 13.5 0.2 12 6.2 0.0 2.5 2 0 0 2 2 2 0 Nicking enzyme C-terminal middle helical domain TPR_8 PF13181.6 gi|212224666|ref|YP_002307902.1| - 0.23 11.7 1.5 1.6 9.1 0.7 2.9 3 0 0 3 3 3 0 Tetratricopeptide repeat GHMP_kinases_N PF00288.26 gi|212224667|ref|YP_002307903.1| - 3.2e-08 33.7 0.4 7.5e-08 32.5 0.4 1.6 1 0 0 1 1 1 1 GHMP kinases N terminal domain Amino_oxidase PF01593.24 gi|212224667|ref|YP_002307903.1| - 0.028 13.7 0.0 0.038 13.3 0.0 1.2 1 0 0 1 1 1 0 Flavin containing amine oxidoreductase Na_H_antiporter PF03553.14 gi|212224668|ref|YP_002307904.1| - 1.6e-65 221.3 20.8 1.6e-65 221.3 20.8 3.2 2 2 0 2 2 2 1 Na+/H+ antiporter family Na_H_antiport_2 PF13726.6 gi|212224668|ref|YP_002307904.1| - 10 6.4 12.7 0.18 11.9 3.6 2.8 3 0 0 3 3 3 0 Na+-H+ antiporter family UDG PF03167.19 gi|212224669|ref|YP_002307905.1| - 6.3e-47 159.4 0.0 8.2e-47 159.1 0.0 1.1 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily MttA_Hcf106 PF02416.16 gi|212224670|ref|YP_002307906.1| - 0.089 12.1 0.0 0.14 11.5 0.0 1.4 1 0 0 1 1 1 0 mttA/Hcf106 family Radical_SAM PF04055.21 gi|212224671|ref|YP_002307907.1| - 1e-21 78.0 3.2 2.1e-21 77.0 0.0 3.0 3 0 0 3 3 3 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|212224671|ref|YP_002307907.1| - 5.4e-07 30.0 0.5 1.8e-06 28.3 0.0 2.1 2 1 0 2 2 2 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|212224671|ref|YP_002307907.1| - 3.3e-06 27.2 1.6 9.3e-06 25.8 0.0 2.5 2 1 0 2 2 2 1 4Fe-4S single cluster domain DUF3213 PF11491.8 gi|212224672|ref|YP_002307908.1| - 1.7e-33 114.6 1.2 2.2e-33 114.3 1.2 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3213) NuA4 PF09340.10 gi|212224672|ref|YP_002307908.1| - 0.031 14.2 0.1 0.056 13.3 0.1 1.4 1 0 0 1 1 1 0 Histone acetyltransferase subunit NuA4 MGDG_synth PF06925.11 gi|212224672|ref|YP_002307908.1| - 0.1 12.7 0.0 0.12 12.5 0.0 1.0 1 0 0 1 1 1 0 Monogalactosyldiacylglycerol (MGDG) synthase DUF2139 PF09910.9 gi|212224673|ref|YP_002307909.1| - 9.3e-150 498.5 0.2 1.2e-149 498.2 0.2 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2139) LrgA PF03788.14 gi|212224674|ref|YP_002307910.1| - 2.7e-29 100.9 8.4 3.2e-29 100.7 8.4 1.1 1 0 0 1 1 1 1 LrgA family DUF347 PF03988.12 gi|212224674|ref|YP_002307910.1| - 1.5 9.1 6.9 1.4 9.2 1.3 2.5 2 1 0 2 2 2 0 Repeat of Unknown Function (DUF347) LrgB PF04172.16 gi|212224675|ref|YP_002307911.1| - 1.3e-71 240.6 13.8 1.4e-71 240.4 13.8 1.0 1 0 0 1 1 1 1 LrgB-like family TFX_C PF14601.6 gi|212224676|ref|YP_002307912.1| - 1.3e-21 76.4 0.1 1.7e-21 75.9 0.1 1.2 1 0 0 1 1 1 1 DNA_binding protein, TFX, C-term Sigma70_r4 PF04545.16 gi|212224676|ref|YP_002307912.1| - 2.3e-06 27.0 3.2 2.3e-06 27.0 3.2 1.8 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_37 PF13744.6 gi|212224676|ref|YP_002307912.1| - 1.4e-05 24.9 0.3 0.0014 18.5 0.2 2.3 2 0 0 2 2 2 1 Helix-turn-helix domain GerE PF00196.19 gi|212224676|ref|YP_002307912.1| - 1.9e-05 24.1 0.8 3.5e-05 23.3 0.8 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family Sigma70_r4_2 PF08281.12 gi|212224676|ref|YP_002307912.1| - 0.00017 21.2 0.6 0.00031 20.4 0.6 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_3 PF01381.22 gi|212224676|ref|YP_002307912.1| - 0.0018 18.3 1.4 0.0041 17.1 1.4 1.7 1 1 0 1 1 1 1 Helix-turn-helix HTH_38 PF13936.6 gi|212224676|ref|YP_002307912.1| - 0.0021 17.8 2.0 0.0043 16.8 1.3 2.0 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_31 PF13560.6 gi|212224676|ref|YP_002307912.1| - 0.0021 18.4 0.8 0.0041 17.4 0.8 1.6 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.6 gi|212224676|ref|YP_002307912.1| - 0.003 17.3 0.5 0.003 17.3 0.5 2.2 2 1 1 3 3 3 1 Homeodomain-like domain KORA PF16509.5 gi|212224676|ref|YP_002307912.1| - 0.0059 16.9 0.1 0.013 15.8 0.1 1.6 1 0 0 1 1 1 1 TrfB plasmid transcriptional repressor HTH_19 PF12844.7 gi|212224676|ref|YP_002307912.1| - 0.006 16.6 0.4 0.015 15.3 0.4 1.7 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_29 PF13551.6 gi|212224676|ref|YP_002307912.1| - 0.032 14.3 0.1 0.052 13.6 0.1 1.4 1 0 0 1 1 1 0 Winged helix-turn helix MarR PF01047.22 gi|212224676|ref|YP_002307912.1| - 0.046 13.7 0.2 0.1 12.5 0.1 1.7 1 1 0 1 1 1 0 MarR family HTH_28 PF13518.6 gi|212224676|ref|YP_002307912.1| - 0.054 13.6 0.4 0.054 13.6 0.4 1.7 2 0 0 2 2 2 0 Helix-turn-helix domain MarR_2 PF12802.7 gi|212224676|ref|YP_002307912.1| - 0.081 12.8 0.1 0.22 11.5 0.1 1.7 1 0 0 1 1 1 0 MarR family UPF0122 PF04297.14 gi|212224676|ref|YP_002307912.1| - 0.085 13.1 0.4 0.28 11.4 0.2 2.0 1 1 1 2 2 2 0 Putative helix-turn-helix protein, YlxM / p13 like DUF4026 PF13218.6 gi|212224676|ref|YP_002307912.1| - 0.11 11.5 0.1 0.13 11.2 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF4026) Ribosomal_L37e PF01907.19 gi|212224677|ref|YP_002307913.1| - 0.0042 17.2 0.3 0.0066 16.6 0.3 1.3 1 0 0 1 1 1 1 Ribosomal protein L37e zf-RING_7 PF02591.15 gi|212224677|ref|YP_002307913.1| - 0.0079 16.4 0.1 0.024 14.8 0.0 1.8 2 0 0 2 2 2 1 C4-type zinc ribbon domain FYVE PF01363.21 gi|212224677|ref|YP_002307913.1| - 0.0096 16.0 0.5 0.014 15.5 0.5 1.2 1 0 0 1 1 1 1 FYVE zinc finger zinc-ribbons_6 PF07191.12 gi|212224677|ref|YP_002307913.1| - 0.018 15.0 0.3 0.028 14.4 0.3 1.2 1 0 0 1 1 1 0 zinc-ribbons TF_Zn_Ribbon PF08271.12 gi|212224677|ref|YP_002307913.1| - 0.079 12.5 0.6 0.27 10.8 0.6 2.0 1 0 0 1 1 1 0 TFIIB zinc-binding Zn-ribbon_8 PF09723.10 gi|212224677|ref|YP_002307913.1| - 0.084 13.0 0.9 1 9.5 0.1 2.3 1 1 1 2 2 2 0 Zinc ribbon domain DZR PF12773.7 gi|212224677|ref|YP_002307913.1| - 0.097 12.7 0.2 0.16 12.0 0.2 1.2 1 0 0 1 1 1 0 Double zinc ribbon Zn_Tnp_IS1595 PF12760.7 gi|212224677|ref|YP_002307913.1| - 0.12 12.3 1.9 0.23 11.5 1.9 1.4 1 0 0 1 1 1 0 Transposase zinc-ribbon domain DUF1272 PF06906.11 gi|212224677|ref|YP_002307913.1| - 0.56 10.3 2.2 1.1 9.4 0.1 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF1272) Lar_restr_allev PF14354.6 gi|212224677|ref|YP_002307913.1| - 1.3 9.4 6.1 0.55 10.7 2.9 2.0 2 1 0 2 2 2 0 Restriction alleviation protein Lar Aldolase_II PF00596.21 gi|212224678|ref|YP_002307914.1| - 1.3e-45 155.6 0.0 1.4e-45 155.5 0.0 1.0 1 0 0 1 1 1 1 Class II Aldolase and Adducin N-terminal domain UPF0147 PF03685.13 gi|212224679|ref|YP_002307915.1| - 3.6e-33 113.5 2.3 3.9e-33 113.4 2.3 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0147) CobA_CobO_BtuR PF02572.15 gi|212224680|ref|YP_002307916.1| - 8.9e-63 211.6 0.0 1e-62 211.5 0.0 1.0 1 0 0 1 1 1 1 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP AAA_25 PF13481.6 gi|212224680|ref|YP_002307916.1| - 0.062 12.9 0.7 0.3 10.6 0.7 1.9 1 1 0 1 1 1 0 AAA domain Gly_rich_SFCGS PF14272.6 gi|212224680|ref|YP_002307916.1| - 0.082 12.9 0.5 0.23 11.5 0.5 1.7 1 1 0 1 1 1 0 Glycine-rich SFCGS PDDEXK_9 PF08011.11 gi|212224681|ref|YP_002307917.1| - 0.013 15.4 0.3 0.032 14.1 0.0 1.7 2 0 0 2 2 2 0 PD-(D/E)XK nuclease superfamily Mrr_cat PF04471.12 gi|212224681|ref|YP_002307917.1| - 0.026 14.6 0.0 0.29 11.1 0.0 2.2 2 0 0 2 2 2 0 Restriction endonuclease NucS PF01939.16 gi|212224681|ref|YP_002307917.1| - 0.037 13.4 0.0 0.056 12.8 0.0 1.2 1 0 0 1 1 1 0 Endonuclease NucS TYW3 PF02676.14 gi|212224682|ref|YP_002307918.1| - 2.1e-40 138.4 0.0 2.7e-40 138.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase TYW3 BPL_LplA_LipB PF03099.19 gi|212224683|ref|YP_002307919.1| - 2.9e-12 46.6 0.0 4.9e-12 45.9 0.0 1.4 1 0 0 1 1 1 1 Biotin/lipoate A/B protein ligase family Peptidase_S24 PF00717.23 gi|212224684|ref|YP_002307920.1| - 4.3e-08 33.0 0.4 6.2e-08 32.5 0.4 1.2 1 0 0 1 1 1 1 Peptidase S24-like DUF4222 PF13973.6 gi|212224684|ref|YP_002307920.1| - 0.18 11.4 0.8 0.3 10.7 0.6 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4222) DUF531 PF04407.12 gi|212224685|ref|YP_002307921.1| - 7.9e-79 263.7 0.0 9e-79 263.5 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF531) SPOUT_MTase_2 PF14419.6 gi|212224685|ref|YP_002307921.1| - 0.0031 16.9 0.0 0.0045 16.4 0.0 1.2 1 0 0 1 1 1 1 AF2226-like SPOUT RNA Methylase fused to THUMP TPR_12 PF13424.6 gi|212224686|ref|YP_002307922.1| - 0.00025 21.3 1.4 7.4 6.9 0.0 4.9 5 1 0 5 5 5 2 Tetratricopeptide repeat TPR_MalT PF17874.1 gi|212224686|ref|YP_002307922.1| - 0.031 13.7 0.0 0.38 10.1 0.0 2.3 1 1 0 1 1 1 0 MalT-like TPR region SIX1_SD PF16878.5 gi|212224686|ref|YP_002307922.1| - 0.035 14.6 0.0 0.072 13.6 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator, SIX1, N-terminal SD domain TPR_8 PF13181.6 gi|212224686|ref|YP_002307922.1| - 0.074 13.3 3.5 8.3 6.9 0.1 4.6 4 1 0 4 4 4 0 Tetratricopeptide repeat DnaB_bind PF10410.9 gi|212224686|ref|YP_002307922.1| - 0.076 13.2 4.7 21 5.4 0.1 4.3 4 1 1 5 5 5 0 DnaB-helicase binding domain of primase RNR_N PF08343.10 gi|212224686|ref|YP_002307922.1| - 0.13 12.3 1.2 0.27 11.3 0.2 2.1 2 0 0 2 2 2 0 Ribonucleotide reductase N-terminal Peptidase_M19 PF01244.21 gi|212224687|ref|YP_002307923.1| - 1.1e-94 317.2 0.0 1.2e-94 317.1 0.0 1.0 1 0 0 1 1 1 1 Membrane dipeptidase (Peptidase family M19) DUF104 PF01954.16 gi|212224688|ref|YP_002307924.1| - 8.1e-13 48.6 2.0 9.1e-13 48.4 2.0 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF104 PIN PF01850.21 gi|212224689|ref|YP_002307925.1| - 9.2e-13 48.8 0.6 2.1e-12 47.6 0.6 1.6 1 1 0 1 1 1 1 PIN domain PIN_12 PF16289.5 gi|212224689|ref|YP_002307925.1| - 0.00069 20.1 0.0 0.00098 19.7 0.0 1.3 1 0 0 1 1 1 1 PIN domain PIN_3 PF13470.6 gi|212224689|ref|YP_002307925.1| - 0.0045 17.7 0.2 0.0075 17.0 0.1 1.5 1 1 0 1 1 1 1 PIN domain PIN_2 PF10130.9 gi|212224689|ref|YP_002307925.1| - 0.005 17.1 0.2 0.0094 16.2 0.2 1.6 1 1 0 1 1 1 1 PIN domain PIN_5 PF08745.11 gi|212224689|ref|YP_002307925.1| - 0.011 15.1 0.8 1.7 8.0 0.0 2.1 1 1 0 2 2 2 0 PINc domain ribonuclease PIN_4 PF13638.6 gi|212224689|ref|YP_002307925.1| - 0.041 14.2 0.1 0.33 11.2 0.1 2.2 1 1 0 1 1 1 0 PIN domain Methyltransf_11 PF08241.12 gi|212224690|ref|YP_002307926.1| - 2.1e-09 37.9 0.0 4.6e-09 36.8 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|212224690|ref|YP_002307926.1| - 2.5e-09 37.7 0.0 4.1e-09 37.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.15 gi|212224690|ref|YP_002307926.1| - 1.6e-08 34.4 0.0 2.4e-08 33.8 0.0 1.2 1 0 0 1 1 1 1 Conserved hypothetical protein 95 MTS PF05175.14 gi|212224690|ref|YP_002307926.1| - 6.3e-08 32.3 0.0 9.7e-08 31.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Spermine_synth PF01564.17 gi|212224690|ref|YP_002307926.1| - 1.3e-06 27.9 0.0 1.9e-06 27.5 0.0 1.2 1 0 0 1 1 1 1 Spermine/spermidine synthase domain Methyltransf_31 PF13847.6 gi|212224690|ref|YP_002307926.1| - 1.6e-06 28.0 0.0 2.2e-06 27.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_15 PF09445.10 gi|212224690|ref|YP_002307926.1| - 9.6e-06 25.3 0.0 1.5e-05 24.7 0.0 1.2 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_23 PF13489.6 gi|212224690|ref|YP_002307926.1| - 3.4e-05 23.7 0.0 8.8e-05 22.4 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|212224690|ref|YP_002307926.1| - 7.2e-05 22.2 0.0 0.00093 18.6 0.0 2.1 2 0 0 2 2 2 1 ubiE/COQ5 methyltransferase family N6_N4_Mtase PF01555.18 gi|212224690|ref|YP_002307926.1| - 9.3e-05 22.2 0.0 0.0016 18.2 0.0 2.1 2 0 0 2 2 2 1 DNA methylase Methyltransf_24 PF13578.6 gi|212224690|ref|YP_002307926.1| - 0.00027 21.9 0.0 0.00082 20.4 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_30 PF05430.11 gi|212224690|ref|YP_002307926.1| - 0.0013 18.6 0.0 0.0026 17.6 0.0 1.6 1 0 0 1 1 1 1 S-adenosyl-L-methionine-dependent methyltransferase UPF0020 PF01170.18 gi|212224690|ref|YP_002307926.1| - 0.0049 16.6 0.0 0.014 15.1 0.0 1.7 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 N6_Mtase PF02384.16 gi|212224690|ref|YP_002307926.1| - 0.005 16.1 0.0 0.0078 15.5 0.0 1.2 1 0 0 1 1 1 1 N-6 DNA Methylase RrnaAD PF00398.20 gi|212224690|ref|YP_002307926.1| - 0.0051 15.9 0.0 0.007 15.5 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase SAM_MT PF04445.13 gi|212224690|ref|YP_002307926.1| - 0.0079 15.6 0.0 0.015 14.7 0.0 1.4 1 1 0 1 1 1 1 Putative SAM-dependent methyltransferase Met_10 PF02475.16 gi|212224690|ref|YP_002307926.1| - 0.011 15.6 0.0 0.016 15.0 0.0 1.3 1 0 0 1 1 1 0 Met-10+ like-protein Methyltransf_3 PF01596.17 gi|212224690|ref|YP_002307926.1| - 0.015 14.5 0.0 0.023 13.9 0.0 1.2 1 0 0 1 1 1 0 O-methyltransferase CMAS PF02353.20 gi|212224690|ref|YP_002307926.1| - 0.092 12.0 0.0 0.23 10.7 0.0 1.7 2 1 0 2 2 2 0 Mycolic acid cyclopropane synthetase Methyltr_RsmB-F PF01189.17 gi|212224690|ref|YP_002307926.1| - 0.095 12.3 0.0 0.15 11.7 0.0 1.3 1 0 0 1 1 1 0 16S rRNA methyltransferase RsmB/F DUF1965 PF09248.10 gi|212224690|ref|YP_002307926.1| - 0.14 12.0 0.0 0.33 10.8 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF1965) YdjM PF04307.14 gi|212224691|ref|YP_002307927.1| - 3.3e-13 49.3 2.4 4.8e-08 32.5 0.7 2.3 2 0 0 2 2 2 2 LexA-binding, inner membrane-associated putative hydrolase tRNA_anti-codon PF01336.25 gi|212224691|ref|YP_002307927.1| - 0.001 19.0 0.1 0.0025 17.7 0.1 1.6 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain Cofilin_ADF PF00241.20 gi|212224691|ref|YP_002307927.1| - 0.1 12.4 0.1 0.33 10.7 0.0 1.8 1 1 0 1 1 1 0 Cofilin/tropomyosin-type actin-binding protein TctA PF01970.16 gi|212224692|ref|YP_002307928.1| - 2.3e-50 171.5 40.7 2.6e-50 171.3 40.7 1.0 1 0 0 1 1 1 1 Tripartite tricarboxylate transporter TctA family CrgA PF06781.12 gi|212224692|ref|YP_002307928.1| - 8.8 6.5 6.9 1.2 9.2 0.6 2.8 3 0 0 3 3 3 0 Cell division protein CrgA tRNA_anti-codon PF01336.25 gi|212224693|ref|YP_002307929.1| - 8.8e-32 108.9 22.4 2.9e-06 27.2 0.3 9.1 8 1 0 8 8 8 7 OB-fold nucleic acid binding domain tRNA_anti_2 PF13742.6 gi|212224693|ref|YP_002307929.1| - 8.3e-13 48.4 6.1 0.21 11.8 0.0 7.5 7 0 0 7 7 7 4 OB-fold nucleic acid binding domain RMI2 PF16100.5 gi|212224693|ref|YP_002307929.1| - 8.9e-08 32.0 12.9 0.033 14.0 0.0 5.9 6 1 1 7 7 7 3 RecQ-mediated genome instability protein 2 RMI1_C PF16099.5 gi|212224693|ref|YP_002307929.1| - 6e-05 22.9 0.1 1 9.2 0.0 3.8 3 0 0 3 3 3 1 Recq-mediated genome instability protein 1, C-terminal OB-fold CcmE PF03100.15 gi|212224693|ref|YP_002307929.1| - 0.0014 18.6 1.1 0.066 13.2 0.1 3.8 4 0 0 4 4 4 1 CcmE tRNA_anti-like PF12869.7 gi|212224693|ref|YP_002307929.1| - 0.0045 16.6 20.2 0.17 11.5 0.4 5.8 7 0 0 7 7 7 2 tRNA_anti-like TOBE_2 PF08402.10 gi|212224693|ref|YP_002307929.1| - 0.0075 16.4 10.2 0.23 11.7 0.2 6.0 6 0 0 6 6 6 1 TOBE domain Stn1 PF10451.9 gi|212224693|ref|YP_002307929.1| - 0.013 14.4 5.1 0.42 9.6 0.0 4.6 4 2 2 6 6 6 0 Telomere regulation protein Stn1 FlgD_ig PF13860.6 gi|212224693|ref|YP_002307929.1| - 0.16 11.9 4.8 5.3 7.0 0.0 4.8 6 1 0 6 6 6 0 FlgD Ig-like domain Peptidase_S9 PF00326.21 gi|212224694|ref|YP_002307930.1| - 4e-52 176.8 0.0 5.5e-52 176.3 0.0 1.2 1 0 0 1 1 1 1 Prolyl oligopeptidase family Peptidase_S15 PF02129.18 gi|212224694|ref|YP_002307930.1| - 1.4e-12 47.8 0.0 2.3e-08 34.0 0.0 2.3 1 1 1 2 2 2 2 X-Pro dipeptidyl-peptidase (S15 family) DLH PF01738.18 gi|212224694|ref|YP_002307930.1| - 2.2e-05 24.1 0.0 4.9e-05 23.0 0.0 1.6 1 1 0 1 1 1 1 Dienelactone hydrolase family AXE1 PF05448.12 gi|212224694|ref|YP_002307930.1| - 2.2e-05 23.3 0.3 0.0023 16.7 0.3 2.7 2 1 0 2 2 2 1 Acetyl xylan esterase (AXE1) PD40 PF07676.12 gi|212224694|ref|YP_002307930.1| - 3.4e-05 23.7 0.6 0.0026 17.7 0.0 3.2 3 0 0 3 3 3 1 WD40-like Beta Propeller Repeat Abhydrolase_1 PF00561.20 gi|212224694|ref|YP_002307930.1| - 0.00012 21.9 0.0 0.0012 18.5 0.0 2.1 1 1 1 2 2 2 1 alpha/beta hydrolase fold Hydrolase_4 PF12146.8 gi|212224694|ref|YP_002307930.1| - 0.00016 21.1 0.1 0.019 14.3 0.0 2.2 2 0 0 2 2 2 1 Serine aminopeptidase, S33 Abhydrolase_2 PF02230.16 gi|212224694|ref|YP_002307930.1| - 0.0029 17.5 0.1 0.4 10.4 0.0 2.8 3 0 0 3 3 3 1 Phospholipase/Carboxylesterase Abhydrolase_6 PF12697.7 gi|212224694|ref|YP_002307930.1| - 0.013 16.1 0.0 0.023 15.3 0.0 1.5 1 0 0 1 1 1 0 Alpha/beta hydrolase family BAAT_C PF08840.11 gi|212224694|ref|YP_002307930.1| - 0.019 14.9 0.0 5.9 6.7 0.0 2.3 2 0 0 2 2 2 0 BAAT / Acyl-CoA thioester hydrolase C terminal Chlorophyllase2 PF12740.7 gi|212224694|ref|YP_002307930.1| - 0.038 12.9 0.0 0.061 12.2 0.0 1.2 1 0 0 1 1 1 0 Chlorophyllase enzyme PAF-AH_p_II PF03403.13 gi|212224694|ref|YP_002307930.1| - 0.067 11.7 0.0 2.6 6.5 0.0 2.3 2 0 0 2 2 2 0 Platelet-activating factor acetylhydrolase, isoform II DUF2920 PF11144.8 gi|212224694|ref|YP_002307930.1| - 0.15 11.2 0.0 12 4.9 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2920) UbiA PF01040.18 gi|212224695|ref|YP_002307931.1| - 0.0026 17.1 3.4 0.0039 16.5 3.4 1.3 1 0 0 1 1 1 1 UbiA prenyltransferase family DUF1056 PF06341.11 gi|212224695|ref|YP_002307931.1| - 0.0054 17.0 0.2 0.0054 17.0 0.2 1.7 2 0 0 2 2 2 1 Protein of unknown function (DUF1056) PRA1 PF03208.19 gi|212224695|ref|YP_002307931.1| - 0.009 15.6 4.7 0.012 15.2 4.7 1.2 1 0 0 1 1 1 1 PRA1 family protein DUF3099 PF11298.8 gi|212224695|ref|YP_002307931.1| - 0.59 10.3 10.8 0.19 11.8 1.3 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3099) TctB PF07331.11 gi|212224695|ref|YP_002307931.1| - 1.2 9.4 11.4 0.64 10.3 7.8 1.6 1 1 0 1 1 1 0 Tripartite tricarboxylate transporter TctB family RseC_MucC PF04246.12 gi|212224695|ref|YP_002307931.1| - 1.5 8.8 6.1 2.1 8.3 0.3 2.0 1 1 0 2 2 2 0 Positive regulator of sigma(E), RseC/MucC FA_desaturase PF00487.24 gi|212224695|ref|YP_002307931.1| - 4.2 7.1 5.6 5.5 6.7 5.6 1.2 1 0 0 1 1 1 0 Fatty acid desaturase APH PF01636.23 gi|212224696|ref|YP_002307932.1| - 0.0069 16.3 0.0 0.011 15.7 0.0 1.3 1 1 0 1 1 1 1 Phosphotransferase enzyme family Choline_kinase PF01633.20 gi|212224696|ref|YP_002307932.1| - 0.025 14.2 0.1 0.37 10.3 0.1 2.0 1 1 1 2 2 2 0 Choline/ethanolamine kinase Kdo PF06293.14 gi|212224696|ref|YP_002307932.1| - 0.042 13.2 0.0 0.076 12.4 0.0 1.4 1 0 0 1 1 1 0 Lipopolysaccharide kinase (Kdo/WaaP) family AsnC_trans_reg PF01037.21 gi|212224697|ref|YP_002307933.1| - 2.2e-18 66.0 0.6 2.4e-18 65.9 0.6 1.0 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain Spore_YhcN_YlaJ PF09580.10 gi|212224697|ref|YP_002307933.1| - 0.00049 20.2 0.1 0.00058 20.0 0.1 1.1 1 0 0 1 1 1 1 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) HMA PF00403.26 gi|212224697|ref|YP_002307933.1| - 0.00074 19.9 0.3 0.0009 19.6 0.3 1.1 1 0 0 1 1 1 1 Heavy-metal-associated domain GYD PF08734.11 gi|212224697|ref|YP_002307933.1| - 0.018 15.0 1.4 0.045 13.7 1.2 1.9 1 1 1 2 2 2 0 GYD domain NapD PF03927.13 gi|212224697|ref|YP_002307933.1| - 0.023 14.7 0.3 0.028 14.5 0.3 1.1 1 0 0 1 1 1 0 NapD protein DUF5395 PF17373.2 gi|212224697|ref|YP_002307933.1| - 0.049 14.3 0.1 0.062 13.9 0.1 1.3 1 1 0 1 1 1 0 Family of unknown function (DUF5395) FadA PF09403.10 gi|212224697|ref|YP_002307933.1| - 0.082 13.4 0.2 0.095 13.2 0.2 1.0 1 0 0 1 1 1 0 Adhesion protein FadA ABC2_membrane_2 PF12679.7 gi|212224698|ref|YP_002307934.1| - 4.1e-17 62.4 15.7 6.8e-17 61.7 15.3 1.5 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.7 gi|212224698|ref|YP_002307934.1| - 5.7e-08 32.3 18.8 7e-08 32.0 18.8 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.7 gi|212224699|ref|YP_002307935.1| - 0.21 10.7 14.3 0.11 11.5 12.7 1.3 1 1 0 1 1 1 0 ABC-2 family transporter protein DUF4493 PF14900.6 gi|212224701|ref|YP_002307937.1| - 0.012 15.5 0.0 0.014 15.3 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4493) DUF5119 PF17145.4 gi|212224701|ref|YP_002307937.1| - 0.14 12.0 0.0 0.19 11.6 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF5119) PhoU_div PF01865.16 gi|212224702|ref|YP_002307938.1| - 2.4e-43 148.0 9.3 2.7e-43 147.8 9.3 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF47 PhoU PF01895.19 gi|212224702|ref|YP_002307938.1| - 1.9e-05 25.0 10.8 0.0008 19.8 1.4 2.6 2 2 0 2 2 2 2 PhoU domain PHO4 PF01384.20 gi|212224703|ref|YP_002307939.1| - 3.9e-109 364.8 36.3 4.9e-109 364.5 36.3 1.1 1 0 0 1 1 1 1 Phosphate transporter family Ytca PF17090.5 gi|212224703|ref|YP_002307939.1| - 0.02 15.4 3.8 0.31 11.6 0.0 3.7 3 0 0 3 3 3 0 Uncharacterised protein family Myc_target_1 PF15179.6 gi|212224703|ref|YP_002307939.1| - 0.43 10.4 3.8 12 5.8 0.7 2.4 2 0 0 2 2 2 0 Myc target protein 1 Metallophos PF00149.28 gi|212224704|ref|YP_002307940.1| - 1.7e-11 45.0 3.3 1.7e-11 45.0 3.3 1.9 2 1 0 2 2 2 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|212224704|ref|YP_002307940.1| - 1.5e-05 25.3 0.0 2.8e-05 24.4 0.0 1.4 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain LPAM_1 PF08139.12 gi|212224704|ref|YP_002307940.1| - 0.66 10.6 2.1 2.2 8.9 2.1 2.0 1 0 0 1 1 1 0 Prokaryotic membrane lipoprotein lipid attachment site Cupin_2 PF07883.11 gi|212224705|ref|YP_002307941.1| - 2.2e-15 56.1 0.3 2.8e-15 55.8 0.3 1.2 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.19 gi|212224705|ref|YP_002307941.1| - 8.1e-10 38.7 0.1 1e-09 38.4 0.1 1.1 1 0 0 1 1 1 1 AraC-like ligand binding domain Cupin_1 PF00190.22 gi|212224705|ref|YP_002307941.1| - 0.00019 21.0 0.0 0.00023 20.8 0.0 1.1 1 0 0 1 1 1 1 Cupin Cupin_3 PF05899.12 gi|212224705|ref|YP_002307941.1| - 0.00075 19.1 0.0 0.0011 18.6 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF861) PCO_ADO PF07847.12 gi|212224705|ref|YP_002307941.1| - 0.0031 17.0 0.0 0.0047 16.4 0.0 1.2 1 0 0 1 1 1 1 PCO_ADO Ectoine_synth PF06339.12 gi|212224705|ref|YP_002307941.1| - 0.0044 17.2 0.0 0.0048 17.1 0.0 1.1 1 0 0 1 1 1 1 Ectoine synthase Cupin_7 PF12973.7 gi|212224705|ref|YP_002307941.1| - 0.0066 16.3 0.1 0.0083 16.0 0.1 1.2 1 0 0 1 1 1 1 ChrR Cupin-like domain MannoseP_isomer PF01050.18 gi|212224705|ref|YP_002307941.1| - 0.0067 16.3 0.0 0.0082 16.0 0.0 1.1 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase Auxin_BP PF02041.16 gi|212224705|ref|YP_002307941.1| - 0.0092 15.7 0.0 0.011 15.4 0.0 1.3 1 1 0 1 1 1 1 Auxin binding protein DMSP_lyase PF16867.5 gi|212224705|ref|YP_002307941.1| - 0.044 13.4 0.5 0.061 13.0 0.5 1.2 1 0 0 1 1 1 0 Dimethlysulfonioproprionate lyase Peptidase_S24 PF00717.23 gi|212224706|ref|YP_002307942.1| - 6.6e-06 26.0 0.1 1.3e-05 25.1 0.1 1.5 1 1 0 1 1 1 1 Peptidase S24-like Sigma_reg_N PF13800.6 gi|212224706|ref|YP_002307942.1| - 0.84 10.0 4.4 0.36 11.1 0.9 2.0 2 0 0 2 2 2 0 Sigma factor regulator N-terminal Lipoprotein_17 PF04200.12 gi|212224707|ref|YP_002307943.1| - 0.0012 19.2 0.9 0.0017 18.7 0.9 1.2 1 0 0 1 1 1 1 Lipoprotein associated domain Big_9 PF17963.1 gi|212224707|ref|YP_002307943.1| - 0.48 11.2 12.8 1.9 9.3 12.8 1.9 1 1 0 1 1 1 0 Bacterial Ig domain Radical_SAM PF04055.21 gi|212224708|ref|YP_002307944.1| - 3.3e-27 95.9 1.2 2.2e-24 86.7 0.2 2.2 2 0 0 2 2 2 2 Radical SAM superfamily UPF0004 PF00919.20 gi|212224708|ref|YP_002307944.1| - 1.3e-22 79.7 0.0 2.6e-22 78.7 0.0 1.5 1 0 0 1 1 1 1 Uncharacterized protein family UPF0004 TRAM PF01938.20 gi|212224708|ref|YP_002307944.1| - 2.3e-08 33.9 0.2 4.8e-08 32.9 0.2 1.6 1 0 0 1 1 1 1 TRAM domain His_biosynth PF00977.21 gi|212224708|ref|YP_002307944.1| - 0.16 11.4 0.1 15 4.9 0.0 2.9 2 1 1 3 3 3 0 Histidine biosynthesis protein TRAM PF01938.20 gi|212224709|ref|YP_002307945.1| - 5.9e-16 58.2 2.9 6.6e-16 58.1 2.9 1.0 1 0 0 1 1 1 1 TRAM domain NiFeSe_Hases PF00374.19 gi|212224710|ref|YP_002307946.1| - 3.6e-24 85.5 6.2 7.3e-14 51.5 0.1 4.7 2 1 2 4 4 4 4 Nickel-dependent hydrogenase Complex1_49kDa PF00346.19 gi|212224710|ref|YP_002307946.1| - 0.00023 20.3 0.0 0.016 14.3 0.0 2.3 2 0 0 2 2 2 2 Respiratory-chain NADH dehydrogenase, 49 Kd subunit GHL5 PF14872.6 gi|212224710|ref|YP_002307946.1| - 0.029 12.4 0.0 0.041 11.9 0.0 1.1 1 0 0 1 1 1 0 Hypothetical glycoside hydrolase 5 Oxidored_q6 PF01058.22 gi|212224711|ref|YP_002307947.1| - 2e-23 82.6 1.2 2.1e-23 82.6 0.0 1.5 2 0 0 2 2 2 1 NADH ubiquinone oxidoreductase, 20 Kd subunit Fer4 PF00037.27 gi|212224711|ref|YP_002307947.1| - 2.4e-10 39.8 13.0 1.1e-07 31.3 2.9 3.6 4 0 0 4 4 3 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|212224711|ref|YP_002307947.1| - 4e-08 33.3 9.9 4e-08 33.3 9.9 2.0 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|212224711|ref|YP_002307947.1| - 7.7e-08 32.8 9.1 7.7e-08 32.8 9.1 2.5 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|212224711|ref|YP_002307947.1| - 2.2e-07 30.9 12.8 4.7e-06 26.6 10.8 3.1 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|212224711|ref|YP_002307947.1| - 3.3e-07 30.3 8.8 3.3e-07 30.3 8.8 2.6 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|212224711|ref|YP_002307947.1| - 1.1e-05 25.2 12.8 8.1e-05 22.5 3.4 2.9 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|212224711|ref|YP_002307947.1| - 1.4e-05 24.9 17.9 0.0041 17.1 2.3 3.6 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_4 PF12800.7 gi|212224711|ref|YP_002307947.1| - 6.6e-05 23.1 21.5 0.0013 19.1 2.4 3.3 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_8 PF13183.6 gi|212224711|ref|YP_002307947.1| - 0.0004 20.8 3.7 0.026 15.0 0.0 2.9 4 0 0 4 4 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|212224711|ref|YP_002307947.1| - 0.0024 18.7 4.8 0.0024 18.7 4.8 3.6 4 0 0 4 4 3 1 4Fe-4S binding domain Fer4_16 PF13484.6 gi|212224711|ref|YP_002307947.1| - 0.01 16.7 17.9 0.011 16.7 5.2 3.0 2 1 1 3 3 2 0 4Fe-4S double cluster binding domain Fer4_17 PF13534.6 gi|212224711|ref|YP_002307947.1| - 0.014 16.0 16.7 0.029 14.9 0.9 2.9 2 1 1 3 3 2 0 4Fe-4S dicluster domain CGGC PF08821.11 gi|212224711|ref|YP_002307947.1| - 0.022 15.0 8.2 0.084 13.1 0.1 2.8 2 1 1 3 3 3 0 CGGC domain Fer4_18 PF13746.6 gi|212224711|ref|YP_002307947.1| - 0.063 13.5 7.2 0.05 13.8 5.2 1.8 2 0 0 2 2 2 0 4Fe-4S dicluster domain DJ-1_PfpI PF01965.24 gi|212224711|ref|YP_002307947.1| - 0.14 11.9 0.0 0.21 11.4 0.0 1.2 1 0 0 1 1 1 0 DJ-1/PfpI family HydF_tetramer PF18133.1 gi|212224711|ref|YP_002307947.1| - 0.25 11.1 8.7 0.44 10.3 0.0 3.1 2 1 1 3 3 3 0 Hydrogen maturase F tetramerization domain Fer4_13 PF13370.6 gi|212224711|ref|YP_002307947.1| - 4.2 8.0 18.5 0.45 11.1 1.9 3.6 3 1 1 4 4 4 0 4Fe-4S single cluster domain of Ferredoxin I ETF_QO PF05187.13 gi|212224711|ref|YP_002307947.1| - 7.4 6.8 6.4 14 5.9 0.9 2.3 1 1 1 2 2 2 0 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S Fer4_22 PF17179.4 gi|212224711|ref|YP_002307947.1| - 9.7 7.1 18.4 0.99 10.3 2.4 2.9 2 1 2 4 4 3 0 4Fe-4S dicluster domain FrhB_FdhB_C PF04432.13 gi|212224712|ref|YP_002307948.1| - 2.1e-28 99.1 0.0 3e-28 98.6 0.0 1.2 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus FrhB_FdhB_N PF04422.13 gi|212224712|ref|YP_002307948.1| - 6.6e-22 77.4 0.1 1.1e-21 76.7 0.1 1.4 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term FdhD-NarQ PF02634.15 gi|212224713|ref|YP_002307949.1| - 3e-58 197.3 0.0 3.4e-58 197.1 0.0 1.0 1 0 0 1 1 1 1 FdhD/NarQ family Peptidase_C39_2 PF13529.6 gi|212224713|ref|YP_002307949.1| - 0.22 12.1 0.0 0.4 11.2 0.0 1.5 1 1 0 1 1 1 0 Peptidase_C39 like family Molybdopterin PF00384.22 gi|212224714|ref|YP_002307950.1| - 1.2e-90 304.6 0.0 1.4e-90 304.3 0.0 1.1 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.21 gi|212224714|ref|YP_002307950.1| - 3.8e-28 97.7 0.0 8.8e-28 96.6 0.0 1.6 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.16 gi|212224714|ref|YP_002307950.1| - 2.5e-09 37.0 0.1 5.2e-09 35.9 0.1 1.6 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain Fer4_11 PF13247.6 gi|212224715|ref|YP_002307951.1| - 1.1e-24 86.4 9.0 1.1e-24 86.4 9.0 1.9 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|212224715|ref|YP_002307951.1| - 3.4e-11 43.5 29.1 2.1e-06 28.2 12.3 3.3 2 1 2 4 4 4 4 4Fe-4S dicluster domain Fer4 PF00037.27 gi|212224715|ref|YP_002307951.1| - 6.2e-11 41.6 41.2 0.00047 19.8 3.4 5.4 6 0 0 6 6 6 4 4Fe-4S binding domain Fer4_9 PF13187.6 gi|212224715|ref|YP_002307951.1| - 2.5e-10 40.4 25.0 5.5e-05 23.3 5.2 2.9 2 2 1 3 3 3 3 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|212224715|ref|YP_002307951.1| - 3.4e-09 36.4 36.4 0.002 18.1 1.7 5.0 4 1 0 4 4 4 3 4Fe-4S binding domain Fer4_10 PF13237.6 gi|212224715|ref|YP_002307951.1| - 9.3e-09 35.3 31.0 3.5e-05 23.8 9.4 3.3 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|212224715|ref|YP_002307951.1| - 1e-07 31.6 31.6 0.0033 17.4 2.5 4.3 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_21 PF14697.6 gi|212224715|ref|YP_002307951.1| - 6.9e-07 29.3 28.6 1.6e-05 24.9 8.4 3.6 3 1 1 4 4 4 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|212224715|ref|YP_002307951.1| - 1.3e-06 29.2 29.0 0.028 15.3 2.8 4.7 4 1 1 5 5 5 4 4Fe-4S double cluster binding domain Fer4_3 PF12798.7 gi|212224715|ref|YP_002307951.1| - 8.7e-06 26.3 40.3 0.016 16.1 5.8 4.3 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_4 PF12800.7 gi|212224715|ref|YP_002307951.1| - 0.00011 22.5 33.2 0.016 15.7 2.8 4.5 4 1 0 4 4 4 3 4Fe-4S binding domain Fer4_17 PF13534.6 gi|212224715|ref|YP_002307951.1| - 0.0012 19.3 27.9 0.17 12.5 1.4 4.4 2 1 1 4 4 4 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|212224715|ref|YP_002307951.1| - 0.0044 17.4 29.8 0.71 10.4 0.4 4.2 3 2 1 4 4 4 2 4Fe-4S dicluster domain Fer4_20 PF14691.6 gi|212224715|ref|YP_002307951.1| - 0.24 11.2 25.1 0.12 12.1 3.6 4.0 1 1 3 4 4 4 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Proton_antipo_M PF00361.20 gi|212224716|ref|YP_002307952.1| - 1.8e-47 162.0 25.0 1.8e-47 162.0 25.0 2.0 2 1 1 3 3 3 1 Proton-conducting membrane transporter Proton_antipo_N PF00662.20 gi|212224716|ref|YP_002307952.1| - 1.9e-06 27.8 0.6 1.9e-06 27.8 0.6 3.2 3 0 0 3 3 3 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Proton_antipo_M PF00361.20 gi|212224717|ref|YP_002307953.1| - 8.9e-46 156.4 25.7 8.9e-46 156.4 25.7 1.9 1 1 1 2 2 2 1 Proton-conducting membrane transporter Proton_antipo_M PF00361.20 gi|212224718|ref|YP_002307954.1| - 1.1e-52 179.0 25.6 1.1e-52 179.0 25.6 2.8 1 1 1 2 2 2 1 Proton-conducting membrane transporter Proton_antipo_N PF00662.20 gi|212224718|ref|YP_002307954.1| - 0.00011 22.2 0.8 0.00011 22.2 0.8 3.7 2 1 1 3 3 3 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Acetyltransf_18 PF18014.1 gi|212224718|ref|YP_002307954.1| - 0.2 11.5 0.0 0.36 10.7 0.0 1.3 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain NADHdh PF00146.21 gi|212224719|ref|YP_002307955.1| - 8.5e-44 150.0 26.1 9.9e-44 149.8 26.1 1.0 1 0 0 1 1 1 1 NADH dehydrogenase Complex1_49kDa PF00346.19 gi|212224720|ref|YP_002307956.1| - 4.6e-62 209.6 0.2 4.4e-45 153.9 0.0 2.3 1 1 1 2 2 2 2 Respiratory-chain NADH dehydrogenase, 49 Kd subunit Complex1_30kDa PF00329.19 gi|212224720|ref|YP_002307956.1| - 3.9e-27 95.3 0.0 1e-26 94.0 0.0 1.7 2 0 0 2 2 2 1 Respiratory-chain NADH dehydrogenase, 30 Kd subunit NiFeSe_Hases PF00374.19 gi|212224720|ref|YP_002307956.1| - 4.3e-19 68.8 5.5 2e-16 60.0 0.4 2.7 2 1 0 2 2 2 2 Nickel-dependent hydrogenase Fer4 PF00037.27 gi|212224721|ref|YP_002307957.1| - 1.9e-15 55.9 23.5 1.1e-08 34.5 3.7 3.3 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|212224721|ref|YP_002307957.1| - 8.1e-14 51.9 7.9 8.1e-14 51.9 7.9 2.7 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|212224721|ref|YP_002307957.1| - 3e-11 43.3 19.9 2.7e-08 33.8 11.0 3.2 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|212224721|ref|YP_002307957.1| - 1.5e-10 41.0 18.8 0.00013 22.0 2.3 3.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|212224721|ref|YP_002307957.1| - 2.6e-10 39.9 15.4 6.1e-07 29.3 4.0 3.8 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|212224721|ref|YP_002307957.1| - 6.9e-10 38.9 10.3 1.4e-08 34.8 7.6 2.2 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|212224721|ref|YP_002307957.1| - 5.8e-09 35.5 23.2 1.6e-05 24.7 3.6 4.0 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|212224721|ref|YP_002307957.1| - 1.4e-08 35.5 16.1 0.00078 20.3 9.0 3.2 2 1 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_8 PF13183.6 gi|212224721|ref|YP_002307957.1| - 2.9e-08 34.0 11.9 0.0018 18.7 5.9 2.9 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|212224721|ref|YP_002307957.1| - 1.4e-07 32.0 9.0 0.0065 17.0 0.1 3.2 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|212224721|ref|YP_002307957.1| - 6.8e-06 26.7 25.3 0.0013 19.5 7.1 3.2 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_4 PF12800.7 gi|212224721|ref|YP_002307957.1| - 1.8e-05 24.9 13.0 9.3e-05 22.6 0.8 3.8 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_22 PF17179.4 gi|212224721|ref|YP_002307957.1| - 0.0013 19.5 14.2 0.032 15.1 0.5 2.7 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|212224721|ref|YP_002307957.1| - 0.0017 19.0 12.4 0.0035 18.0 0.7 2.7 2 1 0 2 2 2 1 4Fe-4S single cluster domain Methyltransf_13 PF08421.11 gi|212224721|ref|YP_002307957.1| - 0.0025 18.0 0.6 0.45 10.8 0.1 3.2 2 1 1 3 3 3 1 Putative zinc binding domain Fer4_13 PF13370.6 gi|212224721|ref|YP_002307957.1| - 0.015 15.8 17.3 0.025 15.1 2.6 3.1 3 1 1 4 4 4 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_18 PF13746.6 gi|212224721|ref|YP_002307957.1| - 0.33 11.2 16.7 1.7 8.8 4.8 3.0 1 1 1 3 3 3 0 4Fe-4S dicluster domain zf-Dof PF02701.15 gi|212224721|ref|YP_002307957.1| - 1.3 9.2 0.1 1.3 9.2 0.1 2.9 3 0 0 3 3 3 0 Dof domain, zinc finger zinc_ribbon_6 PF14599.6 gi|212224721|ref|YP_002307957.1| - 1.4 9.0 0.0 1.4 9.0 0.0 3.1 4 0 0 4 4 4 0 Zinc-ribbon Oxidored_q6 PF01058.22 gi|212224722|ref|YP_002307958.1| - 4e-23 81.7 0.0 5.8e-23 81.2 0.0 1.2 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit NEL PF14496.6 gi|212224722|ref|YP_002307958.1| - 0.024 14.1 0.0 0.034 13.6 0.0 1.1 1 0 0 1 1 1 0 C-terminal novel E3 ligase, LRR-interacting Form_Nir_trans PF01226.17 gi|212224724|ref|YP_002307960.1| - 2.3e-71 239.9 22.9 3.4e-71 239.3 22.9 1.3 1 0 0 1 1 1 1 Formate/nitrite transporter MrpF_PhaF PF04066.13 gi|212224725|ref|YP_002307961.1| - 6.4e-12 45.7 10.2 6.4e-12 45.7 10.2 1.9 2 0 0 2 2 2 1 Multiple resistance and pH regulation protein F (MrpF / PhaF) PhaG_MnhG_YufB PF03334.14 gi|212224726|ref|YP_002307962.1| - 1.2e-15 57.5 12.1 1.5e-15 57.1 12.1 1.1 1 0 0 1 1 1 1 Na+/H+ antiporter subunit Rpn9_C PF18261.1 gi|212224726|ref|YP_002307962.1| - 0.19 11.3 0.1 0.28 10.8 0.1 1.2 1 0 0 1 1 1 0 Rpn9 C-terminal helix DUF3899 PF13038.6 gi|212224726|ref|YP_002307962.1| - 0.64 10.6 5.0 0.96 10.0 1.2 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF3899) DUF3042 PF11240.8 gi|212224726|ref|YP_002307962.1| - 1.2 9.2 3.2 4.5 7.4 0.1 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3042) DUF4040 PF13244.6 gi|212224727|ref|YP_002307963.1| - 2.3e-11 43.7 9.6 3.5e-11 43.1 9.6 1.4 1 1 0 1 1 1 1 Domain of unknown function (DUF4040) DUF4191 PF13829.6 gi|212224727|ref|YP_002307963.1| - 0.07 12.5 3.5 0.082 12.2 3.5 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4191) DUF2070 PF09843.9 gi|212224727|ref|YP_002307963.1| - 0.29 9.4 10.2 0.32 9.2 10.2 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) CPBP PF02517.16 gi|212224727|ref|YP_002307963.1| - 1.1 9.6 7.5 0.85 10.0 0.2 2.1 1 1 1 2 2 2 0 CPBP intramembrane metalloprotease CreD PF06123.12 gi|212224727|ref|YP_002307963.1| - 5.7 5.6 8.6 6.4 5.4 8.6 1.0 1 0 0 1 1 1 0 Inner membrane protein CreD MnhB PF04039.13 gi|212224728|ref|YP_002307964.1| - 3.1e-23 82.4 7.8 3.1e-23 82.4 7.8 2.0 2 1 0 2 2 2 1 Domain related to MnhB subunit of Na+/H+ antiporter DUF2106 PF09879.9 gi|212224728|ref|YP_002307964.1| - 0.0037 16.8 0.1 0.0082 15.7 0.1 1.6 1 0 0 1 1 1 1 Predicted membrane protein (DUF2106) NrsF PF06532.11 gi|212224728|ref|YP_002307964.1| - 0.0091 15.7 1.0 0.0091 15.7 1.0 2.3 4 0 0 4 4 4 1 Negative regulator of sigma F Acyl_transf_3 PF01757.22 gi|212224728|ref|YP_002307964.1| - 0.016 14.3 4.8 0.037 13.1 4.8 1.6 1 1 0 1 1 1 0 Acyltransferase family Oxidored_q2 PF00420.24 gi|212224729|ref|YP_002307965.1| - 6.4e-21 74.0 4.5 8.7e-21 73.5 4.5 1.1 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L Endomucin PF07010.12 gi|212224729|ref|YP_002307965.1| - 0.16 11.9 2.1 2.5 8.0 0.1 2.1 2 0 0 2 2 2 0 Endomucin MNHE PF01899.16 gi|212224730|ref|YP_002307966.1| - 1.9e-39 134.7 0.4 2.1e-39 134.6 0.4 1.0 1 0 0 1 1 1 1 Na+/H+ ion antiporter subunit Proton_antipo_M PF00361.20 gi|212224731|ref|YP_002307967.1| - 5.7e-59 199.7 28.3 5.7e-59 199.7 28.3 2.0 3 0 0 3 3 3 1 Proton-conducting membrane transporter Proton_antipo_N PF00662.20 gi|212224731|ref|YP_002307967.1| - 4.6e-07 29.8 1.2 2.6e-06 27.4 1.2 2.4 1 0 0 1 1 1 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus NTP_transf_3 PF12804.7 gi|212224732|ref|YP_002307968.1| - 1.7e-29 103.2 0.0 2.1e-29 102.9 0.0 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.19 gi|212224732|ref|YP_002307968.1| - 4.5e-06 26.6 0.0 5.9e-06 26.2 0.0 1.2 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CTP_transf_3 PF02348.19 gi|212224732|ref|YP_002307968.1| - 1.9e-05 24.7 0.0 3.5e-05 23.8 0.0 1.4 1 0 0 1 1 1 1 Cytidylyltransferase NTP_transferase PF00483.23 gi|212224732|ref|YP_002307968.1| - 0.15 11.6 0.0 0.33 10.5 0.0 1.5 1 0 0 1 1 1 0 Nucleotidyl transferase MNHE PF01899.16 gi|212224733|ref|YP_002307969.1| - 3.1e-39 134.0 0.1 3.5e-39 133.9 0.1 1.0 1 0 0 1 1 1 1 Na+/H+ ion antiporter subunit AMIN PF11741.8 gi|212224733|ref|YP_002307969.1| - 0.2 11.8 0.0 0.27 11.4 0.0 1.2 1 0 0 1 1 1 0 AMIN domain MrpF_PhaF PF04066.13 gi|212224734|ref|YP_002307970.1| - 1.3e-21 76.8 6.4 1.3e-21 76.8 6.4 2.0 2 0 0 2 2 2 1 Multiple resistance and pH regulation protein F (MrpF / PhaF) DUF2108 PF09881.9 gi|212224734|ref|YP_002307970.1| - 7.4 6.6 11.7 0.81 9.7 5.5 2.1 2 1 0 2 2 2 0 Predicted membrane protein (DUF2108) PhaG_MnhG_YufB PF03334.14 gi|212224735|ref|YP_002307971.1| - 4.9e-23 81.2 5.3 5.9e-23 80.9 5.3 1.1 1 0 0 1 1 1 1 Na+/H+ antiporter subunit TssN PF17555.2 gi|212224735|ref|YP_002307971.1| - 0.058 12.8 0.9 0.072 12.5 0.9 1.1 1 0 0 1 1 1 0 Type VI secretion system, TssN LHC PF00556.20 gi|212224735|ref|YP_002307971.1| - 0.095 12.9 3.7 1.3 9.3 1.3 2.6 2 0 0 2 2 2 0 Antenna complex alpha/beta subunit Rhomboid PF01694.22 gi|212224735|ref|YP_002307971.1| - 0.16 12.0 3.3 0.35 10.9 3.4 1.5 1 1 0 1 1 1 0 Rhomboid family DUF4040 PF13244.6 gi|212224736|ref|YP_002307972.1| - 7.9e-17 61.2 8.1 9.6e-17 60.9 8.1 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4040) TspO_MBR PF03073.15 gi|212224736|ref|YP_002307972.1| - 0.02 14.9 2.4 0.023 14.8 2.4 1.0 1 0 0 1 1 1 0 TspO/MBR family OATP PF03137.20 gi|212224736|ref|YP_002307972.1| - 0.19 10.0 0.3 0.19 9.9 0.3 1.0 1 0 0 1 1 1 0 Organic Anion Transporter Polypeptide (OATP) family DUF2106 PF09879.9 gi|212224737|ref|YP_002307973.1| - 0.016 14.8 0.2 0.02 14.5 0.2 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2106) MnhB PF04039.13 gi|212224738|ref|YP_002307974.1| - 1.6e-26 93.0 13.0 1.9e-26 92.8 13.0 1.1 1 0 0 1 1 1 1 Domain related to MnhB subunit of Na+/H+ antiporter Oxidored_q2 PF00420.24 gi|212224739|ref|YP_002307975.1| - 3.9e-27 93.9 4.0 4.8e-27 93.7 4.0 1.0 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L DUF2108 PF09881.9 gi|212224739|ref|YP_002307975.1| - 0.0042 17.0 2.0 0.0042 17.0 2.0 1.8 2 0 0 2 2 2 1 Predicted membrane protein (DUF2108) Saf_2TM PF18303.1 gi|212224739|ref|YP_002307975.1| - 0.013 15.1 1.1 0.034 13.7 0.7 1.7 1 1 1 2 2 2 0 SAVED-fused 2TM effector domain SPW PF03779.14 gi|212224739|ref|YP_002307975.1| - 2 8.0 7.6 0.32 10.6 2.1 2.1 2 0 0 2 2 2 0 SPW repeat Proton_antipo_M PF00361.20 gi|212224740|ref|YP_002307976.1| - 2.8e-58 197.4 31.1 2.8e-58 197.4 31.1 3.3 2 2 0 2 2 2 1 Proton-conducting membrane transporter Proton_antipo_N PF00662.20 gi|212224740|ref|YP_002307976.1| - 7.3e-12 45.2 1.5 7.3e-12 45.2 1.5 3.1 4 0 0 4 4 4 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus DUF3290 PF11694.8 gi|212224740|ref|YP_002307976.1| - 2 8.4 5.8 21 5.1 0.9 2.9 2 0 0 2 2 2 0 Protein of unknown function (DUF3290) NAGLU_N PF12971.7 gi|212224741|ref|YP_002307977.1| - 0.097 12.5 0.0 0.13 12.0 0.0 1.2 1 0 0 1 1 1 0 Alpha-N-acetylglucosaminidase (NAGLU) N-terminal domain LapA_dom PF06305.11 gi|212224741|ref|YP_002307977.1| - 0.25 11.2 7.0 3.4 7.5 1.0 2.2 2 0 0 2 2 2 0 Lipopolysaccharide assembly protein A domain Oxidored_q6 PF01058.22 gi|212224742|ref|YP_002307978.1| - 3.8e-27 94.7 0.0 5e-27 94.3 0.0 1.1 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit Complex1_30kDa PF00329.19 gi|212224743|ref|YP_002307979.1| - 9.9e-22 77.8 0.1 2.3e-21 76.6 0.0 1.5 2 0 0 2 2 2 1 Respiratory-chain NADH dehydrogenase, 30 Kd subunit Complex1_49kDa PF00346.19 gi|212224744|ref|YP_002307980.1| - 1.3e-57 195.0 0.0 1.7e-56 191.3 0.0 2.0 1 1 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 49 Kd subunit NiFeSe_Hases PF00374.19 gi|212224744|ref|YP_002307980.1| - 2.4e-21 76.3 1.7 1.2e-14 54.2 0.2 3.9 4 0 0 4 4 4 2 Nickel-dependent hydrogenase HIRA_B PF09453.10 gi|212224744|ref|YP_002307980.1| - 0.24 11.3 0.5 0.51 10.2 0.5 1.5 1 0 0 1 1 1 0 HIRA B motif NADHdh PF00146.21 gi|212224745|ref|YP_002307981.1| - 9.4e-60 202.4 18.8 1.1e-59 202.2 18.8 1.0 1 0 0 1 1 1 1 NADH dehydrogenase Fer4_7 PF12838.7 gi|212224746|ref|YP_002307982.1| - 8.3e-14 51.9 37.7 5.5e-08 33.3 15.1 2.3 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4 PF00037.27 gi|212224746|ref|YP_002307982.1| - 9.5e-14 50.6 11.7 6.7e-07 28.9 3.2 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|212224746|ref|YP_002307982.1| - 6.4e-10 39.0 16.9 8.7e-07 29.0 11.3 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|212224746|ref|YP_002307982.1| - 7.1e-10 38.5 13.6 3.9e-07 29.9 2.2 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|212224746|ref|YP_002307982.1| - 9.6e-10 38.0 13.0 1.6e-06 27.8 2.5 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|212224746|ref|YP_002307982.1| - 1e-09 38.4 8.6 1.9e-09 37.6 8.6 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|212224746|ref|YP_002307982.1| - 1.5e-09 38.6 11.8 6.4e-05 23.8 5.0 2.7 2 1 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_8 PF13183.6 gi|212224746|ref|YP_002307982.1| - 2.5e-09 37.4 2.9 0.00052 20.4 0.1 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|212224746|ref|YP_002307982.1| - 8.4e-09 35.4 8.3 6.2e-05 23.1 1.0 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|212224746|ref|YP_002307982.1| - 1.7e-06 28.5 9.1 0.00086 19.8 0.1 2.6 2 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|212224746|ref|YP_002307982.1| - 5.5e-06 26.5 14.1 0.0062 16.9 4.4 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.6 gi|212224746|ref|YP_002307982.1| - 4.9e-05 23.5 10.5 4.9e-05 23.5 10.5 2.4 1 1 1 2 2 2 1 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|212224746|ref|YP_002307982.1| - 0.0054 17.6 21.9 0.13 13.2 6.1 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_22 PF17179.4 gi|212224746|ref|YP_002307982.1| - 0.011 16.5 13.6 0.19 12.6 1.7 2.5 2 1 0 2 2 2 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|212224746|ref|YP_002307982.1| - 0.016 15.7 13.6 0.041 14.4 0.3 2.8 2 1 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I ETF_QO PF05187.13 gi|212224746|ref|YP_002307982.1| - 0.029 14.5 5.1 2.2 8.4 1.5 2.8 1 1 2 3 3 3 0 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S Fer4_15 PF13459.6 gi|212224746|ref|YP_002307982.1| - 0.036 14.8 12.6 0.34 11.7 0.7 2.8 2 1 0 2 2 2 0 4Fe-4S single cluster domain T4BSS_DotH_IcmK PF12293.8 gi|212224746|ref|YP_002307982.1| - 0.041 13.1 0.8 0.056 12.7 0.8 1.2 1 0 0 1 1 1 0 Putative outer membrane core complex of type IVb secretion Rubrerythrin PF02915.17 gi|212224747|ref|YP_002307983.1| - 3.1e-15 56.8 7.2 4e-15 56.4 7.2 1.1 1 0 0 1 1 1 1 Rubrerythrin Ferritin_2 PF13668.6 gi|212224747|ref|YP_002307983.1| - 2.9e-06 27.5 0.1 3.6e-06 27.2 0.1 1.1 1 0 0 1 1 1 1 Ferritin-like domain Ferritin PF00210.24 gi|212224747|ref|YP_002307983.1| - 0.018 15.0 6.8 0.051 13.5 2.3 2.4 1 1 1 2 2 2 0 Ferritin-like domain MiaE_2 PF13794.6 gi|212224747|ref|YP_002307983.1| - 0.028 14.1 0.6 0.46 10.2 0.1 2.7 1 1 1 2 2 2 0 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE)-like DUF2383 PF09537.10 gi|212224747|ref|YP_002307983.1| - 0.029 14.7 1.4 0.73 10.2 0.4 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF2383) PSD1 PF07587.11 gi|212224747|ref|YP_002307983.1| - 0.046 13.2 0.0 0.21 11.1 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF1553) MiaE PF06175.11 gi|212224747|ref|YP_002307983.1| - 0.078 12.6 2.9 0.25 10.9 2.9 1.8 1 1 0 1 1 1 0 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) RTX PF02382.15 gi|212224747|ref|YP_002307983.1| - 0.21 11.2 0.2 0.45 10.1 0.0 1.5 2 0 0 2 2 2 0 N-terminal domain in RTX protein Cytochrom_B561 PF03188.16 gi|212224748|ref|YP_002307984.1| - 0.035 14.2 4.9 0.049 13.8 4.9 1.3 1 0 0 1 1 1 0 Eukaryotic cytochrome b561 DUF4079 PF13301.6 gi|212224748|ref|YP_002307984.1| - 0.086 13.0 4.1 0.098 12.8 4.1 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF4079) Phage_holin_3_6 PF07332.11 gi|212224748|ref|YP_002307984.1| - 0.14 12.2 5.0 0.15 12.1 5.0 1.0 1 0 0 1 1 1 0 Putative Actinobacterial Holin-X, holin superfamily III Nitroreductase PF00881.24 gi|212224749|ref|YP_002307985.1| - 1.9e-33 115.9 0.0 2.2e-33 115.7 0.0 1.0 1 0 0 1 1 1 1 Nitroreductase family TM1586_NiRdase PF14512.6 gi|212224749|ref|YP_002307985.1| - 4.4e-09 36.2 0.1 0.0023 17.5 0.0 2.3 2 1 0 2 2 2 2 Putative TM nitroreductase THUMP PF02926.17 gi|212224750|ref|YP_002307986.1| - 2e-24 86.3 0.9 2.4e-24 86.1 0.9 1.1 1 0 0 1 1 1 1 THUMP domain AAA_22 PF13401.6 gi|212224751|ref|YP_002307987.1| - 1.8e-06 28.2 0.0 4.6e-06 27.0 0.0 1.6 1 0 0 1 1 1 1 AAA domain NACHT PF05729.12 gi|212224751|ref|YP_002307987.1| - 9.9e-06 25.6 0.2 0.02 14.8 0.0 2.7 3 0 0 3 3 3 2 NACHT domain AAA PF00004.29 gi|212224751|ref|YP_002307987.1| - 2.1e-05 25.0 0.9 0.00013 22.4 0.4 2.4 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) TniB PF05621.11 gi|212224751|ref|YP_002307987.1| - 2.4e-05 23.8 0.2 4.6e-05 22.9 0.2 1.4 1 0 0 1 1 1 1 Bacterial TniB protein ATPase_2 PF01637.18 gi|212224751|ref|YP_002307987.1| - 3.2e-05 23.9 1.0 6.5e-05 23.0 1.0 1.6 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_16 PF13191.6 gi|212224751|ref|YP_002307987.1| - 0.00015 22.2 0.0 0.00031 21.2 0.0 1.5 1 0 0 1 1 1 1 AAA ATPase domain AAA_14 PF13173.6 gi|212224751|ref|YP_002307987.1| - 0.00024 21.1 2.0 0.038 14.0 2.0 2.5 1 1 0 1 1 1 1 AAA domain NB-ARC PF00931.22 gi|212224751|ref|YP_002307987.1| - 0.00066 18.9 0.0 0.11 11.6 0.1 2.3 2 0 0 2 2 2 1 NB-ARC domain TrmB PF01978.19 gi|212224751|ref|YP_002307987.1| - 0.0034 17.2 0.0 0.38 10.7 0.0 2.7 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB AAA_35 PF14516.6 gi|212224751|ref|YP_002307987.1| - 0.0046 15.9 0.4 0.0073 15.2 0.4 1.2 1 0 0 1 1 1 1 AAA-like domain AAA_7 PF12775.7 gi|212224751|ref|YP_002307987.1| - 0.0092 15.5 0.3 0.018 14.6 0.2 1.5 1 1 0 1 1 1 1 P-loop containing dynein motor region Bac_DnaA PF00308.18 gi|212224751|ref|YP_002307987.1| - 0.016 15.0 0.1 0.49 10.2 0.0 2.2 2 0 0 2 2 2 0 Bacterial dnaA protein ABC_tran PF00005.27 gi|212224751|ref|YP_002307987.1| - 0.017 15.7 0.0 0.031 14.8 0.0 1.5 1 0 0 1 1 1 0 ABC transporter ResIII PF04851.15 gi|212224751|ref|YP_002307987.1| - 0.027 14.5 0.0 0.041 13.9 0.0 1.4 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit ILEI PF15711.5 gi|212224751|ref|YP_002307987.1| - 0.069 13.6 0.0 7.5 7.1 0.0 2.9 3 0 0 3 3 2 0 Interleukin-like EMT inducer ATPase PF06745.13 gi|212224751|ref|YP_002307987.1| - 0.086 12.2 0.3 0.32 10.3 0.1 1.7 1 1 0 1 1 1 0 KaiC AAA_10 PF12846.7 gi|212224751|ref|YP_002307987.1| - 0.11 11.4 0.5 0.18 10.7 0.5 1.3 1 1 0 1 1 1 0 AAA-like domain AAA_5 PF07728.14 gi|212224751|ref|YP_002307987.1| - 0.15 12.0 0.0 5.2 7.1 0.0 2.5 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) TrwB_AAD_bind PF10412.9 gi|212224751|ref|YP_002307987.1| - 0.18 10.7 0.1 0.39 9.6 0.1 1.5 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain AAA_30 PF13604.6 gi|212224751|ref|YP_002307987.1| - 0.22 11.2 0.0 0.43 10.3 0.0 1.4 1 0 0 1 1 1 0 AAA domain YdjM PF04307.14 gi|212224752|ref|YP_002307988.1| - 9.8e-14 51.0 4.0 1.3e-13 50.6 4.0 1.1 1 0 0 1 1 1 1 LexA-binding, inner membrane-associated putative hydrolase MFS_2 PF13347.6 gi|212224752|ref|YP_002307988.1| - 0.2 10.2 11.1 0.043 12.4 5.4 2.0 1 1 1 2 2 2 0 MFS/sugar transport protein DUF872 PF05915.12 gi|212224752|ref|YP_002307988.1| - 1.5 9.1 4.9 0.92 9.7 2.2 1.8 1 1 1 2 2 2 0 Eukaryotic protein of unknown function (DUF872) NiFe_hyd_3_EhaA PF17367.2 gi|212224752|ref|YP_002307988.1| - 4.2 7.6 7.6 1.4 9.1 0.1 3.0 3 1 0 3 3 3 0 NiFe-hydrogenase-type-3 Eha complex subunit A Pyr_redox_2 PF07992.14 gi|212224754|ref|YP_002307990.1| - 1.7e-61 208.1 2.3 1.9e-61 207.9 2.3 1.0 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|212224754|ref|YP_002307990.1| - 3.7e-28 98.6 3.6 4.3e-22 78.7 0.3 2.1 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|212224754|ref|YP_002307990.1| - 5.5e-23 81.3 11.1 5.9e-20 71.6 1.1 4.1 3 1 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|212224754|ref|YP_002307990.1| - 2.2e-15 56.6 1.9 1.8e-05 24.0 0.1 4.1 4 0 0 4 4 4 4 Glucose inhibited division protein A FAD_binding_2 PF00890.24 gi|212224754|ref|YP_002307990.1| - 1.3e-10 41.0 2.6 8.2e-06 25.1 0.2 4.4 3 2 1 4 4 4 2 FAD binding domain FAD_oxidored PF12831.7 gi|212224754|ref|YP_002307990.1| - 1.4e-09 37.8 2.9 1.7e-07 31.0 0.0 2.9 2 1 1 3 3 3 1 FAD dependent oxidoreductase DAO PF01266.24 gi|212224754|ref|YP_002307990.1| - 1.8e-09 37.7 6.6 0.013 15.1 0.3 4.1 3 1 1 4 4 4 3 FAD dependent oxidoreductase FAD_binding_3 PF01494.19 gi|212224754|ref|YP_002307990.1| - 4.4e-09 36.0 2.0 0.00034 20.0 0.1 2.9 2 2 1 3 3 3 2 FAD binding domain HI0933_like PF03486.14 gi|212224754|ref|YP_002307990.1| - 6e-08 31.8 0.7 0.00057 18.7 0.1 3.6 3 1 0 3 3 3 1 HI0933-like protein NAD_binding_7 PF13241.6 gi|212224754|ref|YP_002307990.1| - 3.2e-07 30.7 0.9 0.0012 19.3 0.1 3.1 3 0 0 3 3 3 2 Putative NAD(P)-binding NAD_binding_8 PF13450.6 gi|212224754|ref|YP_002307990.1| - 4e-06 27.0 0.5 0.0012 19.0 0.1 2.5 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Thi4 PF01946.17 gi|212224754|ref|YP_002307990.1| - 8.9e-06 25.1 0.1 0.00055 19.3 0.0 2.3 2 0 0 2 2 2 1 Thi4 family K_oxygenase PF13434.6 gi|212224754|ref|YP_002307990.1| - 6e-05 22.3 0.1 0.043 13.0 0.0 3.2 2 1 1 3 3 3 1 L-lysine 6-monooxygenase (NADPH-requiring) PALP PF00291.25 gi|212224754|ref|YP_002307990.1| - 0.00033 20.2 0.2 0.021 14.2 0.0 2.4 3 0 0 3 3 3 1 Pyridoxal-phosphate dependent enzyme AlaDh_PNT_C PF01262.21 gi|212224754|ref|YP_002307990.1| - 0.00048 19.5 4.8 0.055 12.7 0.0 2.6 3 0 0 3 3 3 2 Alanine dehydrogenase/PNT, C-terminal domain Shikimate_DH PF01488.20 gi|212224754|ref|YP_002307990.1| - 0.00089 19.3 0.5 0.084 12.9 0.0 3.0 3 0 0 3 3 3 1 Shikimate / quinate 5-dehydrogenase IlvN PF07991.12 gi|212224754|ref|YP_002307990.1| - 0.0032 17.1 0.0 0.0079 15.8 0.0 1.7 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain 2-Hacid_dh_C PF02826.19 gi|212224754|ref|YP_002307990.1| - 0.0079 15.6 1.5 2.7 7.3 0.0 3.1 3 0 0 3 3 3 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Lycopene_cycl PF05834.12 gi|212224754|ref|YP_002307990.1| - 0.009 15.1 0.2 0.28 10.2 0.1 2.6 3 0 0 3 3 3 1 Lycopene cyclase protein XdhC_C PF13478.6 gi|212224754|ref|YP_002307990.1| - 0.0092 16.5 0.0 0.41 11.2 0.0 2.3 2 0 0 2 2 2 1 XdhC Rossmann domain Trp_halogenase PF04820.14 gi|212224754|ref|YP_002307990.1| - 0.018 13.9 4.5 0.32 9.8 0.2 2.8 2 1 1 3 3 3 0 Tryptophan halogenase Amino_oxidase PF01593.24 gi|212224754|ref|YP_002307990.1| - 0.18 11.0 0.0 0.69 9.1 0.0 2.0 3 0 0 3 3 3 0 Flavin containing amine oxidoreductase Aminotran_3 PF00202.21 gi|212224756|ref|YP_002307992.1| - 1.7e-115 386.0 0.0 2e-115 385.7 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-III ECF-ribofla_trS PF07155.12 gi|212224757|ref|YP_002307993.1| - 1.7e-38 132.3 19.9 2.3e-38 131.9 19.9 1.2 1 0 0 1 1 1 1 ECF-type riboflavin transporter, S component ECF_trnsprt PF12822.7 gi|212224757|ref|YP_002307993.1| - 1.9e-07 31.4 21.1 1.9e-07 31.4 21.1 1.9 1 1 1 2 2 2 2 ECF transporter, substrate-specific component 7TM-7TMR_HD PF07698.11 gi|212224757|ref|YP_002307993.1| - 0.00028 20.7 8.6 0.00035 20.4 8.6 1.1 1 0 0 1 1 1 1 7TM receptor with intracellular HD hydrolase ATP-synt_J PF04911.12 gi|212224757|ref|YP_002307993.1| - 0.0016 18.0 0.1 0.0016 18.0 0.1 2.3 3 0 0 3 3 3 1 ATP synthase j chain DUF5518 PF17647.1 gi|212224757|ref|YP_002307993.1| - 0.21 11.7 28.9 1.1 9.5 13.1 2.3 2 0 0 2 2 2 0 Family of unknown function (DUF5518) DUF2232 PF09991.9 gi|212224757|ref|YP_002307993.1| - 0.3 10.2 14.7 2.8 7.0 13.6 2.3 1 1 1 2 2 2 0 Predicted membrane protein (DUF2232) DUF1884 PF08967.10 gi|212224758|ref|YP_002307994.1| - 2.8e-26 91.6 0.4 4.9e-26 90.8 0.4 1.4 1 1 0 1 1 1 1 Domain of unknown function (DUF1884) DeoC PF01791.9 gi|212224759|ref|YP_002307995.1| - 6.5e-24 84.9 3.8 8.1e-24 84.5 3.8 1.0 1 0 0 1 1 1 1 DeoC/LacD family aldolase NanE PF04131.14 gi|212224759|ref|YP_002307995.1| - 0.00015 21.1 1.2 0.00022 20.5 1.2 1.3 1 0 0 1 1 1 1 Putative N-acetylmannosamine-6-phosphate epimerase AP_endonuc_2 PF01261.24 gi|212224759|ref|YP_002307995.1| - 0.00069 19.1 0.3 1.4 8.3 0.1 3.0 1 1 1 3 3 3 2 Xylose isomerase-like TIM barrel DHO_dh PF01180.21 gi|212224759|ref|YP_002307995.1| - 0.0014 17.9 1.9 0.0025 17.1 1.7 1.6 1 1 0 1 1 1 1 Dihydroorotate dehydrogenase DUF2802 PF10975.8 gi|212224759|ref|YP_002307995.1| - 0.19 11.8 1.6 4.1 7.6 0.1 2.9 3 0 0 3 3 3 0 Protein of unknown function (DUF2802) PS_pyruv_trans PF04230.13 gi|212224760|ref|YP_002307996.1| - 0.039 13.9 0.0 0.041 13.8 0.0 1.0 1 0 0 1 1 1 0 Polysaccharide pyruvyl transferase MFS_1 PF07690.16 gi|212224762|ref|YP_002307998.1| - 9.4e-17 61.0 33.9 9.4e-17 61.0 33.9 2.2 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_3 PF05977.13 gi|212224762|ref|YP_002307998.1| - 0.00053 18.5 15.8 0.0011 17.5 1.5 2.1 2 0 0 2 2 2 2 Transmembrane secretion effector MFS_1_like PF12832.7 gi|212224762|ref|YP_002307998.1| - 0.028 13.3 28.6 0.033 13.1 22.0 2.7 1 1 1 2 2 2 0 MFS_1 like family MtN3_slv PF03083.16 gi|212224762|ref|YP_002307998.1| - 3.6 7.7 12.3 0.51 10.4 1.1 3.6 3 0 0 3 3 3 0 Sugar efflux transporter for intercellular exchange Radical_SAM PF04055.21 gi|212224763|ref|YP_002307999.1| - 4.2e-15 56.5 0.0 6e-15 56.0 0.0 1.2 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|212224763|ref|YP_002307999.1| - 5.8e-12 46.1 0.0 1.1e-11 45.2 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|212224763|ref|YP_002307999.1| - 2.1e-08 34.3 0.1 8e-08 32.4 0.0 2.0 2 0 0 2 2 2 1 4Fe-4S single cluster domain DUF1931 PF09123.11 gi|212224763|ref|YP_002307999.1| - 0.13 12.3 0.0 3.5 7.7 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF1931) Enolase_C PF00113.22 gi|212224764|ref|YP_002308000.1| - 1.3e-132 441.6 0.0 1.6e-132 441.2 0.0 1.1 1 0 0 1 1 1 1 Enolase, C-terminal TIM barrel domain Enolase_N PF03952.16 gi|212224764|ref|YP_002308000.1| - 8.5e-61 203.9 0.0 1.3e-60 203.3 0.0 1.3 1 0 0 1 1 1 1 Enolase, N-terminal domain MR_MLE_C PF13378.6 gi|212224764|ref|YP_002308000.1| - 2.2e-09 37.2 0.0 3.4e-09 36.6 0.0 1.3 1 0 0 1 1 1 1 Enolase C-terminal domain-like MAAL_C PF07476.11 gi|212224764|ref|YP_002308000.1| - 0.00018 20.8 0.1 0.00048 19.4 0.0 1.7 2 0 0 2 2 2 1 Methylaspartate ammonia-lyase C-terminus Radical_SAM PF04055.21 gi|212224765|ref|YP_002308001.1| - 5.1e-14 53.0 0.5 6.8e-11 42.8 0.3 2.3 1 1 1 2 2 2 2 Radical SAM superfamily HTH_24 PF13412.6 gi|212224766|ref|YP_002308002.1| - 2.3e-18 65.5 0.4 1.8e-15 56.2 0.2 2.2 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|212224766|ref|YP_002308002.1| - 1e-14 54.0 0.2 2.4e-11 43.2 0.0 2.3 2 0 0 2 2 2 2 AsnC-type helix-turn-helix domain AsnC_trans_reg PF01037.21 gi|212224766|ref|YP_002308002.1| - 1.2e-14 54.0 0.1 2e-14 53.3 0.1 1.4 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain TrmB PF01978.19 gi|212224766|ref|YP_002308002.1| - 5e-06 26.3 0.5 9.3e-06 25.4 0.2 1.5 2 0 0 2 2 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.10 gi|212224766|ref|YP_002308002.1| - 1.4e-05 24.7 0.0 6.9e-05 22.6 0.0 1.9 2 0 0 2 2 2 1 IclR helix-turn-helix domain MarR_2 PF12802.7 gi|212224766|ref|YP_002308002.1| - 1.9e-05 24.5 0.0 9.1e-05 22.3 0.0 2.0 2 0 0 2 2 2 1 MarR family HTH_20 PF12840.7 gi|212224766|ref|YP_002308002.1| - 5.3e-05 23.2 0.0 0.00035 20.6 0.0 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_27 PF13463.6 gi|212224766|ref|YP_002308002.1| - 8.8e-05 22.9 0.1 0.0002 21.8 0.1 1.6 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR PF01047.22 gi|212224766|ref|YP_002308002.1| - 0.00013 21.9 0.0 0.00024 21.0 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_8 PF02954.19 gi|212224766|ref|YP_002308002.1| - 0.00025 20.8 0.1 0.00043 20.0 0.1 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, Fis family HTH_23 PF13384.6 gi|212224766|ref|YP_002308002.1| - 0.00028 20.6 0.1 0.022 14.5 0.0 2.4 2 0 0 2 2 2 1 Homeodomain-like domain HTH_11 PF08279.12 gi|212224766|ref|YP_002308002.1| - 0.00058 19.8 0.1 0.0015 18.4 0.0 1.7 2 0 0 2 2 1 1 HTH domain HTH_5 PF01022.20 gi|212224766|ref|YP_002308002.1| - 0.00092 19.0 0.1 0.0013 18.5 0.1 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_30 PF13556.6 gi|212224766|ref|YP_002308002.1| - 0.0026 17.5 0.0 0.0058 16.4 0.0 1.6 1 0 0 1 1 1 1 PucR C-terminal helix-turn-helix domain B-block_TFIIIC PF04182.12 gi|212224766|ref|YP_002308002.1| - 0.0028 17.8 0.0 0.0058 16.8 0.0 1.5 1 0 0 1 1 1 1 B-block binding subunit of TFIIIC HTH_28 PF13518.6 gi|212224766|ref|YP_002308002.1| - 0.009 16.1 0.0 0.07 13.3 0.0 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain DUF2250 PF10007.9 gi|212224766|ref|YP_002308002.1| - 0.014 15.5 0.2 0.027 14.6 0.2 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) Mga PF05043.13 gi|212224766|ref|YP_002308002.1| - 0.02 15.4 0.1 0.033 14.8 0.1 1.4 1 0 0 1 1 1 0 Mga helix-turn-helix domain HTH_micro PF17007.5 gi|212224766|ref|YP_002308002.1| - 0.022 13.6 0.2 0.038 12.8 0.1 1.5 1 1 1 2 2 2 0 HTH-like HTH_10 PF04967.12 gi|212224766|ref|YP_002308002.1| - 0.024 14.4 0.0 0.056 13.3 0.0 1.5 1 0 0 1 1 1 0 HTH DNA binding domain Sigma70_r4 PF04545.16 gi|212224766|ref|YP_002308002.1| - 0.025 14.1 0.1 5.9 6.5 0.0 2.6 2 1 0 2 2 2 0 Sigma-70, region 4 GntR PF00392.21 gi|212224766|ref|YP_002308002.1| - 0.036 13.7 0.2 0.98 9.1 0.0 2.5 3 0 0 3 3 2 0 Bacterial regulatory proteins, gntR family HTH_43 PF09904.9 gi|212224766|ref|YP_002308002.1| - 0.053 13.5 0.0 0.12 12.3 0.0 1.6 2 0 0 2 2 1 0 Winged helix-turn helix HTH_3 PF01381.22 gi|212224766|ref|YP_002308002.1| - 0.06 13.4 0.0 19 5.4 0.0 2.7 3 0 0 3 3 2 0 Helix-turn-helix HTH_41 PF14502.6 gi|212224766|ref|YP_002308002.1| - 0.082 12.6 0.0 0.19 11.5 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|212224766|ref|YP_002308002.1| - 0.092 12.7 0.0 0.38 10.8 0.0 2.0 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain Sigma70_r4_2 PF08281.12 gi|212224766|ref|YP_002308002.1| - 0.11 12.2 0.1 7.8 6.3 0.0 2.5 2 1 0 2 2 2 0 Sigma-70, region 4 Ham1p_like PF01725.16 gi|212224767|ref|YP_002308003.1| - 1e-50 172.3 0.0 1.1e-50 172.1 0.0 1.0 1 0 0 1 1 1 1 Ham1 family Adenosine_kin PF04008.14 gi|212224768|ref|YP_002308004.1| - 4.1e-63 211.8 0.9 4.7e-63 211.6 0.9 1.0 1 0 0 1 1 1 1 Adenosine specific kinase HTH_24 PF13412.6 gi|212224769|ref|YP_002308005.1| - 8.8e-10 38.0 0.1 3.6e-09 36.0 0.0 2.1 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|212224769|ref|YP_002308005.1| - 6e-05 22.8 0.0 0.00041 20.1 0.0 2.3 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain HTH_23 PF13384.6 gi|212224769|ref|YP_002308005.1| - 0.00025 20.7 0.0 0.0027 17.4 0.0 2.4 3 0 0 3 3 3 1 Homeodomain-like domain HTH_Crp_2 PF13545.6 gi|212224769|ref|YP_002308005.1| - 0.00075 19.4 0.0 0.0015 18.5 0.0 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_28 PF13518.6 gi|212224769|ref|YP_002308005.1| - 0.0047 17.0 0.0 0.58 10.3 0.0 2.4 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|212224769|ref|YP_002308005.1| - 0.0054 16.6 0.0 0.011 15.5 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 gi|212224769|ref|YP_002308005.1| - 0.016 15.1 0.0 0.028 14.3 0.0 1.5 1 0 0 1 1 1 0 MarR family HTH_IclR PF09339.10 gi|212224769|ref|YP_002308005.1| - 0.022 14.5 0.0 0.058 13.2 0.0 1.7 2 0 0 2 2 2 0 IclR helix-turn-helix domain TrmB PF01978.19 gi|212224769|ref|YP_002308005.1| - 0.035 14.0 0.8 1.2 9.1 0.0 2.9 3 0 0 3 3 3 0 Sugar-specific transcriptional regulator TrmB Fe_dep_repress PF01325.19 gi|212224769|ref|YP_002308005.1| - 0.05 13.8 0.1 0.23 11.7 0.0 2.1 2 0 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain HTH_29 PF13551.6 gi|212224769|ref|YP_002308005.1| - 0.18 11.8 0.0 0.37 10.8 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn helix RHH_3 PF12651.7 gi|212224769|ref|YP_002308005.1| - 1.7 8.7 7.5 4 7.5 0.9 3.1 3 0 0 3 3 3 0 Ribbon-helix-helix domain SPASM PF13186.6 gi|212224770|ref|YP_002308006.1| - 6.7e-05 23.3 0.0 0.00015 22.2 0.0 1.6 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain MoaE PF02391.17 gi|212224771|ref|YP_002308007.1| - 9.1e-37 125.8 0.0 1e-36 125.6 0.0 1.0 1 0 0 1 1 1 1 MoaE protein ThiF PF00899.21 gi|212224773|ref|YP_002308009.1| - 2e-55 187.8 0.0 2.3e-55 187.6 0.0 1.0 1 0 0 1 1 1 1 ThiF family UDPG_MGDP_dh_N PF03721.14 gi|212224773|ref|YP_002308009.1| - 0.005 16.4 0.0 0.0076 15.8 0.0 1.3 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 2-Hacid_dh_C PF02826.19 gi|212224773|ref|YP_002308009.1| - 0.0062 15.9 0.0 0.012 14.9 0.0 1.5 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 3HCDH_N PF02737.18 gi|212224773|ref|YP_002308009.1| - 0.0082 16.0 0.0 0.013 15.4 0.0 1.4 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ApbA PF02558.16 gi|212224773|ref|YP_002308009.1| - 0.011 15.4 0.0 0.016 14.8 0.0 1.3 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA Ldh_1_N PF00056.23 gi|212224773|ref|YP_002308009.1| - 0.021 14.9 0.1 0.05 13.7 0.0 1.7 2 0 0 2 2 2 0 lactate/malate dehydrogenase, NAD binding domain DAO PF01266.24 gi|212224773|ref|YP_002308009.1| - 0.063 12.9 0.5 0.097 12.2 0.5 1.3 1 1 0 1 1 1 0 FAD dependent oxidoreductase Shikimate_DH PF01488.20 gi|212224773|ref|YP_002308009.1| - 0.13 12.3 0.0 0.32 11.0 0.0 1.7 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase NAD_binding_7 PF13241.6 gi|212224773|ref|YP_002308009.1| - 0.13 12.7 0.0 0.26 11.7 0.0 1.5 1 1 0 1 1 1 0 Putative NAD(P)-binding ThiS PF02597.20 gi|212224774|ref|YP_002308010.1| - 1.7e-20 73.4 0.1 1.9e-20 73.3 0.1 1.0 1 0 0 1 1 1 1 ThiS family Ub-Mut7C PF14451.6 gi|212224774|ref|YP_002308010.1| - 0.021 14.6 0.1 0.047 13.5 0.0 1.6 2 0 0 2 2 2 0 Mut7-C ubiquitin PB1 PF00564.24 gi|212224774|ref|YP_002308010.1| - 0.021 14.7 0.0 0.032 14.2 0.0 1.3 1 0 0 1 1 1 0 PB1 domain CarS-like PF01864.17 gi|212224775|ref|YP_002308011.1| - 9.2e-58 195.1 1.0 1.1e-57 194.9 1.0 1.0 1 0 0 1 1 1 1 CDP-archaeol synthase CTP_transf_1 PF01148.20 gi|212224775|ref|YP_002308011.1| - 2.3e-11 44.0 1.6 2.3e-11 44.0 1.6 1.9 2 0 0 2 2 2 1 Cytidylyltransferase family CytB6-F_Fe-S PF08802.10 gi|212224775|ref|YP_002308011.1| - 0.019 15.0 0.8 0.055 13.5 0.1 2.1 2 0 0 2 2 2 0 Cytochrome B6-F complex Fe-S subunit PrgI PF12666.7 gi|212224775|ref|YP_002308011.1| - 0.13 13.0 4.6 6.9 7.5 0.2 2.9 3 0 0 3 3 3 0 PrgI family protein MarR PF01047.22 gi|212224776|ref|YP_002308012.1| - 1.8e-08 34.2 0.0 5.3e-08 32.7 0.0 1.8 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.7 gi|212224776|ref|YP_002308012.1| - 1.8e-08 34.1 0.0 1.2e-07 31.5 0.0 2.3 2 1 1 3 3 3 1 MarR family TrmB PF01978.19 gi|212224776|ref|YP_002308012.1| - 2.7e-08 33.6 0.2 6.6e-08 32.3 0.2 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.10 gi|212224776|ref|YP_002308012.1| - 3.9e-08 33.0 0.7 1.2e-06 28.2 0.1 2.9 3 1 1 4 4 4 1 IclR helix-turn-helix domain HTH_27 PF13463.6 gi|212224776|ref|YP_002308012.1| - 6.6e-07 29.7 0.1 6.4e-06 26.6 0.0 2.1 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_24 PF13412.6 gi|212224776|ref|YP_002308012.1| - 2.6e-06 26.9 0.2 2.2e-05 23.9 0.0 2.4 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_Crp_2 PF13545.6 gi|212224776|ref|YP_002308012.1| - 9e-06 25.6 0.2 0.002 18.1 0.0 2.9 2 1 1 3 3 3 1 Crp-like helix-turn-helix domain HTH_5 PF01022.20 gi|212224776|ref|YP_002308012.1| - 1.7e-05 24.6 0.2 5.3e-05 23.0 0.2 1.8 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|212224776|ref|YP_002308012.1| - 2.4e-05 24.3 0.0 9e-05 22.5 0.0 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_11 PF08279.12 gi|212224776|ref|YP_002308012.1| - 0.00042 20.2 0.3 0.004 17.1 0.0 2.5 3 0 0 3 3 3 1 HTH domain HTH_29 PF13551.6 gi|212224776|ref|YP_002308012.1| - 0.001 19.0 0.0 0.0028 17.6 0.0 1.7 1 0 0 1 1 1 1 Winged helix-turn helix Sigma70_r4 PF04545.16 gi|212224776|ref|YP_002308012.1| - 0.0017 17.8 0.0 0.0058 16.1 0.0 1.9 1 0 0 1 1 1 1 Sigma-70, region 4 DprA_WH PF17782.1 gi|212224776|ref|YP_002308012.1| - 0.0019 18.2 0.0 0.0072 16.4 0.0 2.0 1 0 0 1 1 1 1 DprA winged helix domain Dimerisation2 PF16864.5 gi|212224776|ref|YP_002308012.1| - 0.0028 17.6 0.0 0.0051 16.8 0.0 1.4 1 0 0 1 1 1 1 Dimerisation domain GntR PF00392.21 gi|212224776|ref|YP_002308012.1| - 0.003 17.2 0.1 0.016 14.8 0.0 2.1 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family Rrf2 PF02082.20 gi|212224776|ref|YP_002308012.1| - 0.0031 17.8 0.1 0.016 15.6 0.0 2.1 2 1 1 3 3 3 1 Transcriptional regulator HTH_36 PF13730.6 gi|212224776|ref|YP_002308012.1| - 0.0087 16.0 0.0 0.044 13.8 0.0 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain DUF1495 PF07381.11 gi|212224776|ref|YP_002308012.1| - 0.013 15.3 0.2 1.3 8.9 0.0 3.4 2 1 1 3 3 3 0 Winged helix DNA-binding domain (DUF1495) HTH_AraC PF00165.23 gi|212224776|ref|YP_002308012.1| - 0.015 15.4 0.0 0.063 13.4 0.0 2.0 2 0 0 2 2 2 0 Bacterial regulatory helix-turn-helix proteins, AraC family RepL PF05732.11 gi|212224776|ref|YP_002308012.1| - 0.038 13.4 0.0 0.097 12.1 0.0 1.6 2 0 0 2 2 2 0 Firmicute plasmid replication protein (RepL) DUF2250 PF10007.9 gi|212224776|ref|YP_002308012.1| - 0.053 13.6 0.3 0.1 12.7 0.3 1.6 1 1 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) SMC_ScpB PF04079.16 gi|212224776|ref|YP_002308012.1| - 0.055 13.1 0.1 0.17 11.5 0.0 1.9 2 1 0 2 2 2 0 Segregation and condensation complex subunit ScpB HetR_C PF18460.1 gi|212224776|ref|YP_002308012.1| - 0.1 12.5 0.6 0.22 11.5 0.5 1.8 1 1 0 1 1 1 0 Heterocyst differentiation regulator C-terminal Hood domain HTH_CodY PF08222.11 gi|212224776|ref|YP_002308012.1| - 0.11 12.0 0.0 0.32 10.6 0.0 1.8 1 0 0 1 1 1 0 CodY helix-turn-helix domain HTH_15 PF12324.8 gi|212224776|ref|YP_002308012.1| - 0.11 12.4 0.1 0.41 10.6 0.0 1.9 2 1 0 2 2 2 0 Helix-turn-helix domain of alkylmercury lyase HTH_1 PF00126.27 gi|212224776|ref|YP_002308012.1| - 0.15 12.0 1.4 1.1 9.3 0.1 2.6 3 0 0 3 3 3 0 Bacterial regulatory helix-turn-helix protein, lysR family MMPL PF03176.15 gi|212224777|ref|YP_002308013.1| - 6.1e-62 209.5 3.1 4.7e-37 127.7 0.4 2.2 2 0 0 2 2 2 2 MMPL family Patched PF02460.18 gi|212224777|ref|YP_002308013.1| - 7e-18 64.1 15.7 1.7e-10 39.7 1.1 3.2 3 0 0 3 3 3 3 Patched family SecD_SecF PF02355.16 gi|212224777|ref|YP_002308013.1| - 3.6e-17 62.4 18.7 1.9e-11 43.7 3.6 3.2 3 0 0 3 3 3 2 Protein export membrane protein ACR_tran PF00873.19 gi|212224777|ref|YP_002308013.1| - 5.1e-10 37.7 14.1 8.9e-08 30.3 4.8 2.2 2 0 0 2 2 2 2 AcrB/AcrD/AcrF family Sterol-sensing PF12349.8 gi|212224777|ref|YP_002308013.1| - 6.2e-10 39.1 2.3 0.00021 21.2 0.3 2.5 2 0 0 2 2 2 2 Sterol-sensing domain of SREBP cleavage-activation CorC_HlyC PF03471.17 gi|212224777|ref|YP_002308013.1| - 0.0026 17.7 1.0 5.2 7.1 0.0 4.1 4 0 0 4 4 4 1 Transporter associated domain DUF4136 PF13590.6 gi|212224777|ref|YP_002308013.1| - 0.12 12.9 0.1 0.29 11.7 0.1 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4136) NPCBM_assoc PF10633.9 gi|212224778|ref|YP_002308014.1| - 4.9e-21 74.8 3.7 0.022 15.0 0.1 7.5 7 1 0 7 7 6 6 NPCBM-associated, NEW3 domain of alpha-galactosidase DUF11 PF01345.18 gi|212224778|ref|YP_002308014.1| - 2e-15 56.9 7.7 0.0025 18.1 0.0 5.6 4 2 0 4 4 4 4 Domain of unknown function DUF11 CARDB PF07705.11 gi|212224778|ref|YP_002308014.1| - 1.1e-13 51.3 6.2 0.095 13.0 0.1 6.5 4 3 0 4 4 4 3 CARDB Peptidase_M73 PF12389.8 gi|212224778|ref|YP_002308014.1| - 1.8e-06 27.9 0.1 0.23 11.2 0.0 4.0 4 1 0 4 4 4 2 Camelysin metallo-endopeptidase ASH PF15780.5 gi|212224778|ref|YP_002308014.1| - 0.00011 22.4 0.4 0.5 10.6 0.0 4.3 4 0 0 4 4 4 1 Abnormal spindle-like microcephaly-assoc'd, ASPM-SPD-2-Hydin DUF4832 PF16116.5 gi|212224778|ref|YP_002308014.1| - 0.00034 20.6 0.2 12 5.7 0.0 5.0 5 1 0 5 5 5 0 Domain of unknown function (DUF4832) DUF2393 PF09624.10 gi|212224778|ref|YP_002308014.1| - 0.0053 16.8 0.5 0.97 9.4 0.0 3.2 4 0 0 4 4 4 1 Protein of unknown function (DUF2393) BsuPI PF12690.7 gi|212224778|ref|YP_002308014.1| - 0.0067 16.4 0.2 32 4.6 0.0 5.0 6 0 0 6 6 5 0 Intracellular proteinase inhibitor TRAP_beta PF05753.14 gi|212224778|ref|YP_002308014.1| - 0.0071 15.8 0.1 0.86 9.0 0.0 3.2 4 0 0 4 4 4 1 Translocon-associated protein beta (TRAPB) DUF1573 PF07610.11 gi|212224778|ref|YP_002308014.1| - 0.011 15.8 3.1 4.8 7.3 0.0 4.8 5 1 0 5 5 5 0 Protein of unknown function (DUF1573) DUF4426 PF14467.6 gi|212224778|ref|YP_002308014.1| - 0.011 15.7 0.1 9.8 6.2 0.0 3.1 3 0 0 3 3 2 0 Domain of unknown function (DUF4426) A2M PF00207.22 gi|212224778|ref|YP_002308014.1| - 0.077 12.9 0.1 19 5.2 0.0 3.1 3 0 0 3 3 2 0 Alpha-2-macroglobulin family CsrA PF02599.16 gi|212224778|ref|YP_002308014.1| - 0.09 12.7 0.0 0.52 10.3 0.0 2.4 1 0 0 1 1 1 0 Global regulator protein family Fn3-like PF14310.6 gi|212224778|ref|YP_002308014.1| - 0.16 12.1 0.4 9.8 6.4 0.0 4.1 5 0 0 5 5 5 0 Fibronectin type III-like domain DUF3872 PF12988.7 gi|212224778|ref|YP_002308014.1| - 0.17 11.7 0.0 11 5.8 0.0 3.0 2 0 0 2 2 2 0 Domain of unknown function, B. Theta Gene description (DUF3872) LEA_2 PF03168.13 gi|212224779|ref|YP_002308015.1| - 1.2e-14 54.6 0.2 1.1e-13 51.5 0.1 2.2 2 0 0 2 2 2 1 Late embryogenesis abundant protein DUF3201 PF11447.8 gi|212224780|ref|YP_002308016.1| - 4.5e-69 230.8 4.8 5.2e-69 230.6 4.8 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3201) Methyltr_RsmB-F PF01189.17 gi|212224781|ref|YP_002308017.1| - 4e-58 196.4 0.0 5.4e-58 195.9 0.0 1.2 1 0 0 1 1 1 1 16S rRNA methyltransferase RsmB/F PUA PF01472.20 gi|212224781|ref|YP_002308017.1| - 3.5e-16 58.9 0.2 7.8e-16 57.8 0.2 1.5 1 0 0 1 1 1 1 PUA domain Methyltransf_31 PF13847.6 gi|212224781|ref|YP_002308017.1| - 1.3e-11 44.5 0.0 1.9e-11 44.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltr_RsmF_N PF17125.5 gi|212224781|ref|YP_002308017.1| - 7.2e-09 36.0 0.0 1.8e-07 31.5 0.0 2.3 2 0 0 2 2 2 1 N-terminal domain of 16S rRNA methyltransferase RsmF Methyltransf_25 PF13649.6 gi|212224781|ref|YP_002308017.1| - 9.4e-06 26.2 0.0 2.2e-05 25.0 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|212224781|ref|YP_002308017.1| - 1.2e-05 24.8 0.0 2.3e-05 23.8 0.0 1.4 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_4 PF02390.17 gi|212224781|ref|YP_002308017.1| - 9.1e-05 22.0 0.1 0.018 14.5 0.0 2.3 2 0 0 2 2 2 1 Putative methyltransferase PCMT PF01135.19 gi|212224781|ref|YP_002308017.1| - 0.001 18.8 0.0 0.0021 17.8 0.0 1.4 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) FtsJ PF01728.19 gi|212224781|ref|YP_002308017.1| - 0.0062 16.7 0.0 0.018 15.1 0.0 1.7 1 1 0 1 1 1 1 FtsJ-like methyltransferase MCD_N PF17408.2 gi|212224781|ref|YP_002308017.1| - 0.017 15.3 0.1 0.041 14.0 0.1 1.6 1 0 0 1 1 1 0 Malonyl-CoA decarboxylase N-terminal domain Methyltransf_15 PF09445.10 gi|212224781|ref|YP_002308017.1| - 0.018 14.6 0.0 0.025 14.2 0.0 1.2 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase Met_10 PF02475.16 gi|212224781|ref|YP_002308017.1| - 0.032 14.0 0.0 0.067 12.9 0.0 1.5 1 1 0 1 1 1 0 Met-10+ like-protein Fibrillarin PF01269.17 gi|212224781|ref|YP_002308017.1| - 0.064 12.4 0.0 0.12 11.5 0.0 1.4 1 0 0 1 1 1 0 Fibrillarin Methyltransf_11 PF08241.12 gi|212224781|ref|YP_002308017.1| - 0.08 13.6 0.1 0.28 11.9 0.0 2.0 2 1 0 2 2 1 0 Methyltransferase domain Methyltransf_24 PF13578.6 gi|212224781|ref|YP_002308017.1| - 0.12 13.4 0.0 0.83 10.7 0.0 2.1 1 1 0 1 1 1 0 Methyltransferase domain ADH_zinc_N PF00107.26 gi|212224781|ref|YP_002308017.1| - 0.13 12.3 0.1 9.5 6.2 0.0 2.6 3 0 0 3 3 3 0 Zinc-binding dehydrogenase LPG_synthase_TM PF03706.13 gi|212224782|ref|YP_002308018.1| - 2.7e-62 211.0 26.7 3.4e-62 210.7 26.7 1.0 1 0 0 1 1 1 1 Lysylphosphatidylglycerol synthase TM region NAD_kinase PF01513.21 gi|212224783|ref|YP_002308019.1| - 5.7e-71 239.1 0.0 8.9e-71 238.4 0.0 1.3 1 1 0 1 1 1 1 ATP-NAD kinase DAGK_cat PF00781.24 gi|212224783|ref|YP_002308019.1| - 0.012 15.2 0.0 0.019 14.6 0.0 1.3 1 0 0 1 1 1 0 Diacylglycerol kinase catalytic domain DUF835 PF05763.12 gi|212224784|ref|YP_002308020.1| - 1.8e-26 92.5 0.0 2.5e-26 92.0 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF835) Peptidase_M22 PF00814.25 gi|212224785|ref|YP_002308021.1| - 8.7e-97 324.0 0.0 1e-96 323.8 0.0 1.0 1 0 0 1 1 1 1 Glycoprotease family Carbam_trans_N PF02543.15 gi|212224785|ref|YP_002308021.1| - 0.00069 19.4 0.0 0.2 11.3 0.0 2.2 2 0 0 2 2 2 2 Carbamoyltransferase N-terminus Flavin_Reduct PF01613.18 gi|212224786|ref|YP_002308022.1| - 2.5e-21 76.3 0.0 3.1e-21 76.0 0.0 1.1 1 0 0 1 1 1 1 Flavin reductase like domain Succ_CoA_lig PF13607.6 gi|212224787|ref|YP_002308023.1| - 7.4e-57 191.0 0.7 8.8e-56 187.5 0.3 2.3 2 0 0 2 2 2 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.6 gi|212224787|ref|YP_002308023.1| - 3e-19 69.6 0.2 1e-17 64.7 0.0 2.4 2 1 0 2 2 2 1 CoA binding domain CoA_binding PF02629.19 gi|212224787|ref|YP_002308023.1| - 3e-05 24.6 4.9 8.7e-05 23.1 0.3 2.9 3 0 0 3 3 3 1 CoA binding domain Hydrolase_6 PF13344.6 gi|212224787|ref|YP_002308023.1| - 0.087 12.9 0.0 0.23 11.6 0.0 1.7 1 0 0 1 1 1 0 Haloacid dehalogenase-like hydrolase DUF4897 PF16238.5 gi|212224788|ref|YP_002308024.1| - 0.0018 18.2 0.2 0.0064 16.3 0.0 1.9 3 0 0 3 3 3 1 Domain of unknown function (DUF4897) CTP_transf_like PF01467.26 gi|212224789|ref|YP_002308025.1| - 1.2e-13 51.5 0.0 1.4e-13 51.2 0.0 1.1 1 0 0 1 1 1 1 Cytidylyltransferase-like FAD_syn PF06574.12 gi|212224789|ref|YP_002308025.1| - 0.00038 20.4 0.0 0.00052 19.9 0.0 1.3 1 0 0 1 1 1 1 FAD synthetase TIM PF00121.18 gi|212224791|ref|YP_002308027.1| - 6.8e-11 42.0 0.1 2.4e-10 40.2 0.0 1.7 1 1 1 2 2 2 1 Triosephosphate isomerase ThiG PF05690.14 gi|212224791|ref|YP_002308027.1| - 4.8e-06 26.1 0.4 1.1e-05 24.8 0.1 1.7 1 1 0 1 1 1 1 Thiazole biosynthesis protein ThiG FMN_dh PF01070.18 gi|212224791|ref|YP_002308027.1| - 0.00019 20.6 0.5 0.00034 19.8 0.1 1.6 2 0 0 2 2 2 1 FMN-dependent dehydrogenase IGPS PF00218.21 gi|212224791|ref|YP_002308027.1| - 0.0004 19.6 0.1 0.00073 18.8 0.1 1.6 1 1 0 1 1 1 1 Indole-3-glycerol phosphate synthase NMO PF03060.15 gi|212224791|ref|YP_002308027.1| - 0.0048 16.3 0.8 0.0048 16.3 0.8 1.6 1 1 1 2 2 2 1 Nitronate monooxygenase His_biosynth PF00977.21 gi|212224791|ref|YP_002308027.1| - 0.011 15.3 0.3 0.037 13.5 0.1 2.0 3 0 0 3 3 3 0 Histidine biosynthesis protein DHO_dh PF01180.21 gi|212224791|ref|YP_002308027.1| - 0.017 14.3 0.1 0.029 13.6 0.1 1.3 1 0 0 1 1 1 0 Dihydroorotate dehydrogenase B12-binding PF02310.19 gi|212224791|ref|YP_002308027.1| - 0.018 15.1 0.2 0.045 13.8 0.1 1.7 2 0 0 2 2 2 0 B12 binding domain NanE PF04131.14 gi|212224791|ref|YP_002308027.1| - 0.037 13.2 0.9 0.1 11.8 0.9 1.8 1 1 0 1 1 1 0 Putative N-acetylmannosamine-6-phosphate epimerase Prok-RING_1 PF14446.6 gi|212224792|ref|YP_002308028.1| - 0.0044 16.9 0.3 0.0066 16.4 0.3 1.2 1 0 0 1 1 1 1 Prokaryotic RING finger family 1 TackOD1 PF18551.1 gi|212224792|ref|YP_002308028.1| - 0.024 14.3 0.2 0.035 13.8 0.2 1.2 1 0 0 1 1 1 0 Thaumarchaeal output domain 1 Rubredoxin PF00301.20 gi|212224792|ref|YP_002308028.1| - 0.027 14.5 0.6 1.7 8.7 0.1 2.4 2 0 0 2 2 2 0 Rubredoxin OrfB_Zn_ribbon PF07282.11 gi|212224792|ref|YP_002308028.1| - 0.032 14.1 0.3 0.1 12.5 0.5 1.6 2 0 0 2 2 2 0 Putative transposase DNA-binding domain Rad50_zn_hook PF04423.14 gi|212224792|ref|YP_002308028.1| - 0.069 13.0 0.2 0.12 12.2 0.2 1.3 1 0 0 1 1 1 0 Rad50 zinc hook motif DZR PF12773.7 gi|212224792|ref|YP_002308028.1| - 0.1 12.6 0.3 0.17 12.0 0.3 1.2 1 0 0 1 1 1 0 Double zinc ribbon zf-C2H2_3 PF13878.6 gi|212224792|ref|YP_002308028.1| - 0.15 11.9 0.3 0.76 9.7 0.0 2.0 2 0 0 2 2 2 0 zinc-finger of acetyl-transferase ESCO TF_Zn_Ribbon PF08271.12 gi|212224792|ref|YP_002308028.1| - 0.92 9.1 3.8 2.3 7.8 3.4 1.9 1 1 0 1 1 1 0 TFIIB zinc-binding PolC_DP2 PF03833.13 gi|212224793|ref|YP_002308029.1| - 0 1207.4 0.3 0 1206.8 0.0 1.4 2 0 0 2 2 2 1 DNA polymerase II large subunit DP2 LAGLIDADG_3 PF14528.6 gi|212224793|ref|YP_002308029.1| - 8.6e-16 58.0 0.9 5.9e-10 39.3 0.0 3.2 3 0 0 3 3 3 2 LAGLIDADG-like domain Intein_splicing PF14890.6 gi|212224793|ref|YP_002308029.1| - 7.2e-13 48.6 1.8 7.8e-13 48.5 0.1 2.0 2 0 0 2 2 2 1 Intein splicing domain HypA PF01155.19 gi|212224793|ref|YP_002308029.1| - 0.0027 17.7 11.7 0.53 10.3 0.1 3.5 2 1 1 3 3 3 3 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DZR PF12773.7 gi|212224793|ref|YP_002308029.1| - 0.0036 17.3 14.6 0.11 12.6 7.4 2.6 2 1 0 2 2 2 2 Double zinc ribbon TF_Zn_Ribbon PF08271.12 gi|212224793|ref|YP_002308029.1| - 0.0038 16.7 2.0 0.0038 16.7 2.0 4.5 4 1 0 4 4 4 1 TFIIB zinc-binding zinc-ribbons_6 PF07191.12 gi|212224793|ref|YP_002308029.1| - 0.011 15.8 9.6 0.73 9.9 0.0 2.9 2 1 0 2 2 2 0 zinc-ribbons LAGLIDADG_WhiA PF14527.6 gi|212224793|ref|YP_002308029.1| - 0.035 14.2 0.1 4.5 7.4 0.0 3.0 2 0 0 2 2 2 0 WhiA LAGLIDADG-like domain Zn_Tnp_IS91 PF14319.6 gi|212224793|ref|YP_002308029.1| - 1.4 9.0 8.1 3.7 7.7 4.4 2.7 2 0 0 2 2 2 0 Transposase zinc-binding domain Zn-ribbon_8 PF09723.10 gi|212224793|ref|YP_002308029.1| - 3.7 7.7 22.4 0.48 10.6 1.7 4.4 3 1 0 3 3 3 0 Zinc ribbon domain zf-CHY PF05495.12 gi|212224793|ref|YP_002308029.1| - 3.9 8.0 7.6 44 4.7 4.4 2.6 2 0 0 2 2 2 0 CHY zinc finger DNA_pol_E_B PF04042.16 gi|212224794|ref|YP_002308030.1| - 5.3e-15 55.3 0.0 7.6e-15 54.8 0.0 1.2 1 0 0 1 1 1 1 DNA polymerase alpha/epsilon subunit B Metallophos PF00149.28 gi|212224794|ref|YP_002308030.1| - 1.5e-10 41.9 0.1 2.6e-10 41.1 0.1 1.4 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase tRNA_anti-codon PF01336.25 gi|212224794|ref|YP_002308030.1| - 5.5e-06 26.3 0.2 1.3e-05 25.1 0.2 1.6 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain Metallophos_2 PF12850.7 gi|212224794|ref|YP_002308030.1| - 0.00053 20.2 0.0 0.0014 18.8 0.0 1.7 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain HIN PF02760.15 gi|212224794|ref|YP_002308030.1| - 0.058 13.1 0.2 0.14 11.8 0.2 1.6 1 0 0 1 1 1 0 HIN-200/IF120x domain Cdc6_C PF09079.11 gi|212224795|ref|YP_002308031.1| - 1.4e-27 95.5 0.4 1.2e-26 92.5 0.0 2.6 3 0 0 3 3 3 1 CDC6, C terminal winged helix domain AAA_16 PF13191.6 gi|212224795|ref|YP_002308031.1| - 3.2e-10 40.6 0.0 8e-09 36.1 0.0 2.5 1 1 0 1 1 1 1 AAA ATPase domain AAA PF00004.29 gi|212224795|ref|YP_002308031.1| - 1.2e-09 38.7 0.1 5e-09 36.7 0.0 2.0 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|212224795|ref|YP_002308031.1| - 2.1e-09 37.8 0.0 5.9e-09 36.3 0.0 1.7 1 0 0 1 1 1 1 AAA domain TniB PF05621.11 gi|212224795|ref|YP_002308031.1| - 8.4e-07 28.6 0.0 1.6e-06 27.7 0.0 1.4 1 0 0 1 1 1 1 Bacterial TniB protein KAP_NTPase PF07693.14 gi|212224795|ref|YP_002308031.1| - 9.3e-05 21.8 0.1 0.031 13.5 0.0 2.5 2 0 0 2 2 2 1 KAP family P-loop domain NB-ARC PF00931.22 gi|212224795|ref|YP_002308031.1| - 9.4e-05 21.7 0.1 0.00019 20.7 0.1 1.5 1 0 0 1 1 1 1 NB-ARC domain AAA_32 PF13654.6 gi|212224795|ref|YP_002308031.1| - 9.4e-05 21.4 2.5 0.002 17.0 0.1 2.3 2 0 0 2 2 2 1 AAA domain ATPase_2 PF01637.18 gi|212224795|ref|YP_002308031.1| - 0.00015 21.8 5.6 0.00027 21.0 3.9 2.1 2 1 0 2 2 1 1 ATPase domain predominantly from Archaea DUF2075 PF09848.9 gi|212224795|ref|YP_002308031.1| - 0.00057 19.2 0.0 0.0009 18.6 0.0 1.3 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) DEAD PF00270.29 gi|212224795|ref|YP_002308031.1| - 0.00081 19.2 1.0 0.27 11.0 1.0 2.4 1 1 0 1 1 1 1 DEAD/DEAH box helicase DUF815 PF05673.13 gi|212224795|ref|YP_002308031.1| - 0.00091 18.5 0.0 0.0024 17.1 0.0 1.7 1 1 1 2 2 2 1 Protein of unknown function (DUF815) Kinesin PF00225.23 gi|212224795|ref|YP_002308031.1| - 0.002 17.1 0.0 0.0035 16.3 0.0 1.3 1 0 0 1 1 1 1 Kinesin motor domain Microtub_bd PF16796.5 gi|212224795|ref|YP_002308031.1| - 0.0027 17.6 0.1 0.0082 16.1 0.0 1.9 2 0 0 2 2 2 1 Microtubule binding AAA_assoc_2 PF16193.5 gi|212224795|ref|YP_002308031.1| - 0.0065 16.8 0.1 0.021 15.1 0.1 1.8 1 0 0 1 1 1 1 AAA C-terminal domain AAA_7 PF12775.7 gi|212224795|ref|YP_002308031.1| - 0.0087 15.6 0.0 0.016 14.7 0.0 1.4 1 0 0 1 1 1 1 P-loop containing dynein motor region AAA_24 PF13479.6 gi|212224795|ref|YP_002308031.1| - 0.011 15.4 0.3 0.024 14.3 0.3 1.5 1 1 0 1 1 1 0 AAA domain Sigma54_activat PF00158.26 gi|212224795|ref|YP_002308031.1| - 0.013 15.2 0.0 0.056 13.1 0.0 2.0 2 0 0 2 2 2 0 Sigma-54 interaction domain AAA_lid_10 PF17872.1 gi|212224795|ref|YP_002308031.1| - 0.02 15.0 0.2 2 8.6 0.0 2.5 2 0 0 2 2 2 0 AAA lid domain AAA_2 PF07724.14 gi|212224795|ref|YP_002308031.1| - 0.023 14.8 0.1 0.15 12.1 0.0 2.3 2 1 0 2 2 2 0 AAA domain (Cdc48 subfamily) RuvB_N PF05496.12 gi|212224795|ref|YP_002308031.1| - 0.026 14.3 0.0 3.4 7.4 0.0 2.4 2 0 0 2 2 2 0 Holliday junction DNA helicase RuvB P-loop domain PIF1 PF05970.14 gi|212224795|ref|YP_002308031.1| - 0.032 13.4 0.0 0.057 12.6 0.0 1.3 1 0 0 1 1 1 0 PIF1-like helicase ResIII PF04851.15 gi|212224795|ref|YP_002308031.1| - 0.033 14.2 0.1 0.09 12.8 0.1 1.8 1 1 0 1 1 1 0 Type III restriction enzyme, res subunit Zeta_toxin PF06414.12 gi|212224795|ref|YP_002308031.1| - 0.045 13.0 0.1 0.26 10.6 0.0 2.1 2 0 0 2 2 2 0 Zeta toxin NACHT PF05729.12 gi|212224795|ref|YP_002308031.1| - 0.049 13.5 0.0 0.13 12.2 0.0 1.7 1 0 0 1 1 1 0 NACHT domain DUF853 PF05872.12 gi|212224795|ref|YP_002308031.1| - 0.053 12.1 0.0 0.1 11.2 0.0 1.4 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF853) AAA_19 PF13245.6 gi|212224795|ref|YP_002308031.1| - 0.059 13.7 0.0 0.18 12.2 0.0 1.8 1 0 0 1 1 1 0 AAA domain T2SSE PF00437.20 gi|212224795|ref|YP_002308031.1| - 0.062 12.3 0.0 0.12 11.4 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein Imm27 PF15590.6 gi|212224796|ref|YP_002308032.1| - 0.16 11.8 0.0 24 4.8 0.0 2.5 2 0 0 2 2 2 0 Immunity protein 27 TrkA_N PF02254.18 gi|212224797|ref|YP_002308033.1| - 3.3e-18 66.0 0.0 5.8e-18 65.3 0.0 1.4 1 0 0 1 1 1 1 TrkA-N domain Ion_trans_2 PF07885.16 gi|212224797|ref|YP_002308033.1| - 1e-17 63.8 11.5 2e-17 62.9 11.5 1.5 1 0 0 1 1 1 1 Ion channel Ion_trans PF00520.31 gi|212224797|ref|YP_002308033.1| - 1.1e-06 28.0 2.1 1.9e-06 27.3 2.1 1.3 1 0 0 1 1 1 1 Ion transport protein ADH_zinc_N PF00107.26 gi|212224797|ref|YP_002308033.1| - 0.0085 16.1 0.1 0.027 14.5 0.0 1.9 2 0 0 2 2 2 1 Zinc-binding dehydrogenase NAD_binding_10 PF13460.6 gi|212224797|ref|YP_002308033.1| - 0.024 14.6 0.1 0.038 13.9 0.1 1.3 1 0 0 1 1 1 0 NAD(P)H-binding DUF2721 PF11026.8 gi|212224797|ref|YP_002308033.1| - 0.032 14.1 2.0 0.032 14.1 2.0 2.3 2 1 1 3 3 3 0 Protein of unknown function (DUF2721) Rad51 PF08423.11 gi|212224798|ref|YP_002308034.1| - 5.2e-94 314.3 0.0 6.5e-94 314.0 0.0 1.1 1 0 0 1 1 1 1 Rad51 RecA PF00154.21 gi|212224798|ref|YP_002308034.1| - 1.6e-13 50.7 0.1 2.6e-13 50.1 0.1 1.3 1 0 0 1 1 1 1 recA bacterial DNA recombination protein HHH_5 PF14520.6 gi|212224798|ref|YP_002308034.1| - 2.8e-12 47.0 3.7 3.4e-12 46.8 1.6 2.3 2 0 0 2 2 2 1 Helix-hairpin-helix domain AAA_25 PF13481.6 gi|212224798|ref|YP_002308034.1| - 1.4e-10 41.1 0.0 2.2e-10 40.4 0.0 1.3 1 0 0 1 1 1 1 AAA domain ATPase PF06745.13 gi|212224798|ref|YP_002308034.1| - 5.1e-09 35.8 0.8 1.7e-08 34.1 0.0 2.1 2 1 0 2 2 2 1 KaiC Cdd1 PF11731.8 gi|212224798|ref|YP_002308034.1| - 1e-06 28.9 0.0 2.3e-06 27.7 0.0 1.7 1 0 0 1 1 1 1 Pathogenicity locus HHH PF00633.23 gi|212224798|ref|YP_002308034.1| - 2.8e-06 26.9 2.4 0.00099 18.9 0.1 2.7 2 0 0 2 2 2 2 Helix-hairpin-helix motif HHH_2 PF12826.7 gi|212224798|ref|YP_002308034.1| - 1.3e-05 25.2 0.8 3.7e-05 23.7 0.1 2.1 2 0 0 2 2 2 1 Helix-hairpin-helix motif AAA_22 PF13401.6 gi|212224798|ref|YP_002308034.1| - 0.00073 19.8 0.1 0.0024 18.2 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA_18 PF13238.6 gi|212224798|ref|YP_002308034.1| - 0.00083 19.9 0.0 0.002 18.6 0.0 1.7 1 0 0 1 1 1 1 AAA domain DNA_pol_lambd_f PF10391.9 gi|212224798|ref|YP_002308034.1| - 0.0012 18.6 0.0 0.0061 16.4 0.0 2.2 1 1 1 2 2 2 1 Fingers domain of DNA polymerase lambda AAA_24 PF13479.6 gi|212224798|ref|YP_002308034.1| - 0.0027 17.5 0.0 0.0063 16.3 0.0 1.6 1 0 0 1 1 1 1 AAA domain ABC_tran PF00005.27 gi|212224798|ref|YP_002308034.1| - 0.0033 18.0 0.0 0.013 16.0 0.0 1.8 1 1 1 2 2 2 1 ABC transporter IMS_HHH PF11798.8 gi|212224798|ref|YP_002308034.1| - 0.0037 17.5 0.1 0.037 14.4 0.0 2.7 3 0 0 3 3 2 1 IMS family HHH motif DUF4332 PF14229.6 gi|212224798|ref|YP_002308034.1| - 0.013 15.7 0.1 0.25 11.6 0.0 2.8 3 0 0 3 3 3 0 Domain of unknown function (DUF4332) HHH_8 PF14716.6 gi|212224798|ref|YP_002308034.1| - 0.017 15.5 4.3 0.076 13.4 0.1 3.2 3 1 0 3 3 3 0 Helix-hairpin-helix domain BAF PF02961.14 gi|212224798|ref|YP_002308034.1| - 0.028 14.8 0.0 0.14 12.6 0.0 2.1 1 1 1 2 2 2 0 Barrier to autointegration factor HHH_3 PF12836.7 gi|212224798|ref|YP_002308034.1| - 0.034 14.4 1.4 12 6.3 0.1 3.0 3 0 0 3 3 3 0 Helix-hairpin-helix motif AAA PF00004.29 gi|212224798|ref|YP_002308034.1| - 0.12 12.8 0.4 0.69 10.3 0.1 2.4 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) PAXNEB PF05625.11 gi|212224798|ref|YP_002308034.1| - 0.13 11.3 0.3 0.94 8.5 0.1 2.0 2 0 0 2 2 2 0 PAXNEB protein Surface_antigen PF11054.8 gi|212224798|ref|YP_002308034.1| - 0.15 11.7 0.0 0.23 11.1 0.0 1.2 1 0 0 1 1 1 0 Sporozoite TA4 surface antigen NucS PF01939.16 gi|212224799|ref|YP_002308035.1| - 7e-89 297.1 0.0 7.9e-89 296.9 0.0 1.0 1 0 0 1 1 1 1 Endonuclease NucS HSDR_N PF04313.14 gi|212224799|ref|YP_002308035.1| - 0.067 13.1 0.1 0.16 11.9 0.0 1.5 1 1 1 2 2 2 0 Type I restriction enzyme R protein N terminus (HSDR_N) KR PF08659.10 gi|212224799|ref|YP_002308035.1| - 0.11 12.4 0.0 0.21 11.5 0.0 1.4 1 0 0 1 1 1 0 KR domain DUF473 PF04322.12 gi|212224800|ref|YP_002308036.1| - 4.2e-31 107.2 0.1 4.7e-31 107.1 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF473) PAC2 PF09754.9 gi|212224801|ref|YP_002308037.1| - 4.7e-46 157.5 0.0 5.5e-46 157.3 0.0 1.0 1 0 0 1 1 1 1 PAC2 family DUF730 PF05325.11 gi|212224801|ref|YP_002308037.1| - 0.14 12.2 0.6 0.23 11.5 0.3 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF730) PNP_UDP_1 PF01048.20 gi|212224802|ref|YP_002308038.1| - 6.5e-49 166.3 0.0 8e-49 166.0 0.0 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily SNase PF00565.17 gi|212224803|ref|YP_002308039.1| - 2e-11 44.3 0.0 3.3e-11 43.6 0.0 1.3 1 0 0 1 1 1 1 Staphylococcal nuclease homologue Amidohydro_1 PF01979.20 gi|212224804|ref|YP_002308040.1| - 3.3e-77 260.1 0.2 3.9e-77 259.9 0.2 1.1 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|212224804|ref|YP_002308040.1| - 4.8e-25 88.9 0.9 1.7e-17 64.0 0.0 2.1 2 0 0 2 2 2 2 Amidohydrolase family A_deaminase PF00962.22 gi|212224804|ref|YP_002308040.1| - 0.0001 21.8 0.0 0.0002 20.8 0.0 1.4 1 0 0 1 1 1 1 Adenosine/AMP deaminase TatD_DNase PF01026.21 gi|212224804|ref|YP_002308040.1| - 0.18 11.2 0.0 0.28 10.5 0.0 1.3 1 0 0 1 1 1 0 TatD related DNase DUF835 PF05763.12 gi|212224805|ref|YP_002308041.1| - 3e-28 98.2 0.0 4.5e-28 97.7 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF835) AAA_22 PF13401.6 gi|212224805|ref|YP_002308041.1| - 0.05 13.9 0.0 0.076 13.3 0.0 1.2 1 0 0 1 1 1 0 AAA domain DUF4337 PF14235.6 gi|212224805|ref|YP_002308041.1| - 0.38 10.8 4.6 4.4 7.4 0.3 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4337) DUF3754 PF12576.8 gi|212224805|ref|YP_002308041.1| - 1.8 8.5 4.7 1.8 8.5 0.7 2.4 2 1 0 2 2 2 0 Protein of unknown function (DUF3754) Macro PF01661.21 gi|212224806|ref|YP_002308042.1| - 4.1e-34 117.2 0.0 5.5e-34 116.7 0.0 1.2 1 0 0 1 1 1 1 Macro domain AAA_21 PF13304.6 gi|212224807|ref|YP_002308043.1| - 1.3e-11 44.9 0.0 2.2e-11 44.1 0.0 1.3 1 0 0 1 1 1 1 AAA domain, putative AbiEii toxin, Type IV TA system ABC_tran PF00005.27 gi|212224807|ref|YP_002308043.1| - 4.2e-06 27.3 0.0 6.5e-06 26.7 0.0 1.3 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.19 gi|212224807|ref|YP_002308043.1| - 0.001 18.5 0.0 0.0014 18.1 0.0 1.1 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain ABC2_membrane PF01061.24 gi|212224808|ref|YP_002308044.1| - 0.0032 16.9 16.0 0.0032 16.9 16.0 1.4 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|212224808|ref|YP_002308044.1| - 1.2 8.1 22.2 1.9 7.5 22.2 1.4 1 1 0 1 1 1 0 ABC-2 family transporter protein PEGA PF08308.11 gi|212224809|ref|YP_002308045.1| - 1.7e-35 120.7 2.0 1.8e-16 59.8 0.0 4.0 3 1 1 4 4 4 3 PEGA domain CarboxypepD_reg PF13620.6 gi|212224809|ref|YP_002308045.1| - 0.0033 17.7 0.0 1.7 8.9 0.0 2.7 2 0 0 2 2 2 2 Carboxypeptidase regulatory-like domain CarbopepD_reg_2 PF13715.6 gi|212224809|ref|YP_002308045.1| - 0.11 12.5 0.0 5.7 7.0 0.0 2.9 3 0 0 3 3 3 0 CarboxypepD_reg-like domain Carb_kinase PF01256.17 gi|212224810|ref|YP_002308046.1| - 2.5e-52 177.8 0.0 3.3e-52 177.4 0.0 1.2 1 0 0 1 1 1 1 Carbohydrate kinase YjeF_N PF03853.15 gi|212224810|ref|YP_002308046.1| - 7e-34 117.2 0.0 2e-33 115.7 0.0 1.7 2 0 0 2 2 2 1 YjeF-related protein N-terminus HK PF02110.15 gi|212224810|ref|YP_002308046.1| - 9.7e-06 25.1 0.0 2.6e-05 23.7 0.0 1.7 1 1 0 1 1 1 1 Hydroxyethylthiazole kinase family Phos_pyr_kin PF08543.12 gi|212224810|ref|YP_002308046.1| - 0.029 13.7 0.0 0.069 12.5 0.0 1.6 1 1 0 1 1 1 0 Phosphomethylpyrimidine kinase DUF1939 PF09154.10 gi|212224811|ref|YP_002308047.1| - 6.5e-22 77.5 2.3 6.5e-22 77.5 2.3 2.1 2 0 0 2 2 2 1 Domain of unknown function (DUF1939) Alpha-amylase PF00128.24 gi|212224811|ref|YP_002308047.1| - 1.2e-12 48.1 5.9 9.2e-12 45.2 5.9 2.2 1 1 0 1 1 1 1 Alpha amylase, catalytic domain HTH_5 PF01022.20 gi|212224812|ref|YP_002308048.1| - 8e-13 48.0 0.9 2e-12 46.7 0.1 2.1 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|212224812|ref|YP_002308048.1| - 4e-11 42.8 0.2 1e-10 41.5 0.0 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_24 PF13412.6 gi|212224812|ref|YP_002308048.1| - 3.9e-09 35.9 0.7 1.2e-08 34.3 0.2 2.1 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding MarR PF01047.22 gi|212224812|ref|YP_002308048.1| - 7.5e-08 32.2 0.1 1.7e-07 31.1 0.1 1.6 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.12 gi|212224812|ref|YP_002308048.1| - 4.4e-07 29.8 2.0 2.8e-06 27.2 0.2 2.6 2 0 0 2 2 2 1 HTH domain TrmB PF01978.19 gi|212224812|ref|YP_002308048.1| - 6.2e-07 29.2 0.2 2.1e-06 27.5 0.0 1.9 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|212224812|ref|YP_002308048.1| - 1.6e-05 24.7 0.0 3.4e-05 23.7 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.10 gi|212224812|ref|YP_002308048.1| - 3.1e-05 23.7 0.0 6.9e-05 22.6 0.0 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain FUR PF01475.19 gi|212224812|ref|YP_002308048.1| - 4.3e-05 23.6 0.3 0.00014 22.0 0.2 2.1 1 1 0 1 1 1 1 Ferric uptake regulator family HTH_Crp_2 PF13545.6 gi|212224812|ref|YP_002308048.1| - 0.00014 21.7 1.3 0.0094 15.9 0.1 2.4 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain HTH_29 PF13551.6 gi|212224812|ref|YP_002308048.1| - 0.0002 21.3 0.1 0.00033 20.6 0.1 1.4 1 0 0 1 1 1 1 Winged helix-turn helix HTH_38 PF13936.6 gi|212224812|ref|YP_002308048.1| - 0.00022 20.9 0.1 0.00063 19.5 0.1 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.6 gi|212224812|ref|YP_002308048.1| - 0.00068 19.4 0.0 0.0014 18.4 0.0 1.4 1 0 0 1 1 1 1 Homeodomain-like domain HTH_36 PF13730.6 gi|212224812|ref|YP_002308048.1| - 0.0016 18.3 0.0 0.0044 16.9 0.0 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain B-block_TFIIIC PF04182.12 gi|212224812|ref|YP_002308048.1| - 0.0034 17.5 0.2 0.015 15.4 0.0 2.1 2 0 0 2 2 2 1 B-block binding subunit of TFIIIC HTH_28 PF13518.6 gi|212224812|ref|YP_002308048.1| - 0.0041 17.2 0.0 0.0081 16.3 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain ArsR PF09824.9 gi|212224812|ref|YP_002308048.1| - 0.021 14.4 0.4 0.34 10.5 0.0 2.2 2 0 0 2 2 2 0 ArsR transcriptional regulator GntR PF00392.21 gi|212224812|ref|YP_002308048.1| - 0.049 13.3 0.2 4.1 7.1 0.0 2.4 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family Stk19 PF10494.9 gi|212224812|ref|YP_002308048.1| - 0.078 12.7 0.8 0.096 12.4 0.8 1.2 1 0 0 1 1 1 0 Serine-threonine protein kinase 19 Carbam_trans_N PF02543.15 gi|212224812|ref|YP_002308048.1| - 0.1 12.3 0.1 0.11 12.1 0.1 1.1 1 0 0 1 1 1 0 Carbamoyltransferase N-terminus PadR PF03551.14 gi|212224812|ref|YP_002308048.1| - 0.11 12.5 0.3 0.51 10.3 0.2 2.1 2 1 0 2 2 2 0 Transcriptional regulator PadR-like family DUF211 PF02680.14 gi|212224813|ref|YP_002308049.1| - 1.9e-37 127.3 3.1 2.2e-37 127.1 3.1 1.0 1 0 0 1 1 1 1 Uncharacterized ArCR, COG1888 Streptin-Immun PF11083.8 gi|212224813|ref|YP_002308049.1| - 0.02 15.3 0.1 0.032 14.6 0.1 1.4 1 0 0 1 1 1 0 Lantibiotic streptin immunity protein HMA PF00403.26 gi|212224813|ref|YP_002308049.1| - 0.073 13.5 2.7 0.12 12.8 1.2 2.0 1 1 1 2 2 2 0 Heavy-metal-associated domain HTH_20 PF12840.7 gi|212224814|ref|YP_002308050.1| - 5.4e-16 58.4 0.0 1.2e-15 57.3 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|212224814|ref|YP_002308050.1| - 7.7e-16 57.7 2.7 1.5e-15 56.8 0.2 2.5 3 0 0 3 3 2 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.6 gi|212224814|ref|YP_002308050.1| - 2.2e-09 36.7 0.5 5.4e-09 35.5 0.5 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.12 gi|212224814|ref|YP_002308050.1| - 5e-08 32.8 0.5 1.4e-07 31.4 0.5 1.8 1 0 0 1 1 1 1 HTH domain TrmB PF01978.19 gi|212224814|ref|YP_002308050.1| - 3.4e-07 30.0 0.7 2.4e-06 27.4 0.2 2.1 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|212224814|ref|YP_002308050.1| - 3.9e-06 26.7 0.0 7.3e-06 25.8 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_29 PF13551.6 gi|212224814|ref|YP_002308050.1| - 1.2e-05 25.2 0.0 2.3e-05 24.3 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn helix ArsR PF09824.9 gi|212224814|ref|YP_002308050.1| - 1.9e-05 24.3 2.9 9.5e-05 22.0 2.2 2.1 1 1 1 2 2 2 1 ArsR transcriptional regulator DUF2513 PF10711.9 gi|212224814|ref|YP_002308050.1| - 3.3e-05 24.1 3.7 0.00063 20.0 0.1 2.2 2 0 0 2 2 2 1 Hypothetical protein (DUF2513) HTH_23 PF13384.6 gi|212224814|ref|YP_002308050.1| - 4.5e-05 23.1 0.0 0.00012 21.8 0.0 1.7 1 0 0 1 1 1 1 Homeodomain-like domain HTH_38 PF13936.6 gi|212224814|ref|YP_002308050.1| - 4.6e-05 23.1 0.1 0.00013 21.6 0.1 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_28 PF13518.6 gi|212224814|ref|YP_002308050.1| - 6.4e-05 23.0 0.3 0.0002 21.4 0.0 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|212224814|ref|YP_002308050.1| - 0.00061 19.7 0.3 0.0016 18.4 0.2 1.8 2 0 0 2 2 1 1 Crp-like helix-turn-helix domain Sigma70_r4_2 PF08281.12 gi|212224814|ref|YP_002308050.1| - 0.00084 19.0 1.6 0.00099 18.7 0.2 1.9 2 0 0 2 2 1 1 Sigma-70, region 4 TFIIE_alpha PF02002.17 gi|212224814|ref|YP_002308050.1| - 0.0012 18.7 1.5 0.0012 18.7 1.5 2.5 1 1 1 2 2 2 1 TFIIE alpha subunit HTH_40 PF14493.6 gi|212224814|ref|YP_002308050.1| - 0.0019 18.6 4.2 0.011 16.2 4.1 2.2 1 1 0 1 1 1 1 Helix-turn-helix domain Fe_dep_repress PF01325.19 gi|212224814|ref|YP_002308050.1| - 0.0019 18.4 0.3 0.006 16.7 0.1 1.9 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain HTH_34 PF13601.6 gi|212224814|ref|YP_002308050.1| - 0.0023 18.1 0.1 0.0078 16.4 0.1 1.9 1 0 0 1 1 1 1 Winged helix DNA-binding domain Rrf2 PF02082.20 gi|212224814|ref|YP_002308050.1| - 0.01 16.1 0.6 0.023 15.0 0.2 1.8 2 0 0 2 2 1 0 Transcriptional regulator Sigma70_r4 PF04545.16 gi|212224814|ref|YP_002308050.1| - 0.011 15.3 0.1 0.025 14.1 0.1 1.6 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_DeoR PF08220.12 gi|212224814|ref|YP_002308050.1| - 0.013 15.3 1.6 0.018 14.8 0.3 1.9 2 0 0 2 2 2 0 DeoR-like helix-turn-helix domain HTH_IclR PF09339.10 gi|212224814|ref|YP_002308050.1| - 0.016 15.0 0.1 0.037 13.8 0.1 1.7 1 0 0 1 1 1 0 IclR helix-turn-helix domain MarR PF01047.22 gi|212224814|ref|YP_002308050.1| - 0.016 15.1 0.4 0.033 14.1 0.4 1.5 1 0 0 1 1 1 0 MarR family HTH_27 PF13463.6 gi|212224814|ref|YP_002308050.1| - 0.028 14.9 0.5 0.062 13.8 0.2 1.7 2 0 0 2 2 1 0 Winged helix DNA-binding domain HTH_7 PF02796.15 gi|212224814|ref|YP_002308050.1| - 0.028 14.5 0.1 0.057 13.5 0.1 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase HTH_17 PF12728.7 gi|212224814|ref|YP_002308050.1| - 0.049 13.8 0.2 0.19 11.9 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain RuvB_C PF05491.13 gi|212224814|ref|YP_002308050.1| - 0.073 13.0 1.2 0.11 12.4 0.2 1.9 2 0 0 2 2 2 0 RuvB C-terminal winged helix domain HTH_CodY PF08222.11 gi|212224814|ref|YP_002308050.1| - 0.086 12.4 0.0 0.21 11.2 0.0 1.7 1 0 0 1 1 1 0 CodY helix-turn-helix domain PadR PF03551.14 gi|212224814|ref|YP_002308050.1| - 0.11 12.5 1.6 0.38 10.8 0.2 2.2 2 0 0 2 2 2 0 Transcriptional regulator PadR-like family DUF592 PF04574.13 gi|212224814|ref|YP_002308050.1| - 0.84 9.4 5.6 0.49 10.2 1.6 2.3 2 1 0 2 2 2 0 Protein of unknown function (DUF592) HTH_WhiA PF02650.14 gi|212224814|ref|YP_002308050.1| - 1.1 9.6 5.9 0.39 11.1 1.3 2.4 2 1 0 2 2 2 0 WhiA C-terminal HTH domain DUF1456 PF07308.13 gi|212224814|ref|YP_002308050.1| - 1.5 9.2 5.3 2.7 8.4 1.1 2.7 2 2 0 2 2 2 0 Protein of unknown function (DUF1456) CitMHS PF03600.16 gi|212224815|ref|YP_002308051.1| - 1.2e-52 179.1 66.3 1e-38 133.3 32.5 2.2 1 1 1 2 2 2 2 Citrate transporter Na_sulph_symp PF00939.19 gi|212224815|ref|YP_002308051.1| - 9.4e-32 110.7 49.3 4.9e-18 65.4 22.6 3.3 2 2 0 2 2 2 2 Sodium:sulfate symporter transmembrane region DctM PF06808.12 gi|212224815|ref|YP_002308051.1| - 2.1e-09 36.7 46.8 1.4e-07 30.7 20.6 3.4 1 1 2 3 3 3 2 Tripartite ATP-independent periplasmic transporter, DctM component OCIA PF07051.11 gi|212224815|ref|YP_002308051.1| - 2 8.5 5.2 7.6 6.6 0.2 2.8 3 0 0 3 3 3 0 Ovarian carcinoma immunoreactive antigen (OCIA) Succ_CoA_lig PF13607.6 gi|212224816|ref|YP_002308052.1| - 6.3e-61 204.2 1.4 8.1e-58 194.1 0.5 3.3 2 1 1 3 3 3 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.6 gi|212224816|ref|YP_002308052.1| - 3.1e-22 79.3 3.9 2.1e-21 76.6 0.7 2.8 3 0 0 3 3 3 1 CoA binding domain CoA_binding PF02629.19 gi|212224816|ref|YP_002308052.1| - 5.7e-16 59.0 5.8 3.4e-15 56.5 2.6 2.6 2 1 0 2 2 2 1 CoA binding domain F420_oxidored PF03807.17 gi|212224816|ref|YP_002308052.1| - 0.0029 18.1 3.2 0.004 17.7 0.5 2.6 3 0 0 3 3 3 1 NADP oxidoreductase coenzyme F420-dependent Semialdhyde_dh PF01118.24 gi|212224816|ref|YP_002308052.1| - 0.022 15.2 0.7 0.41 11.1 0.6 2.9 3 1 0 3 3 3 0 Semialdehyde dehydrogenase, NAD binding domain NAD_Gly3P_dh_N PF01210.23 gi|212224816|ref|YP_002308052.1| - 0.027 14.5 0.0 0.069 13.1 0.0 1.6 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NBD_C PF17042.5 gi|212224816|ref|YP_002308052.1| - 0.073 13.6 0.0 0.25 11.8 0.0 2.0 2 0 0 2 2 2 0 Nucleotide-binding C-terminal domain GFO_IDH_MocA PF01408.22 gi|212224816|ref|YP_002308052.1| - 0.079 13.8 0.8 0.3 11.9 0.1 2.3 2 1 1 3 3 3 0 Oxidoreductase family, NAD-binding Rossmann fold SEP PF08059.13 gi|212224816|ref|YP_002308052.1| - 0.16 12.5 0.0 0.38 11.4 0.0 1.6 1 0 0 1 1 1 0 SEP domain tRNA-synt_1b PF00579.25 gi|212224817|ref|YP_002308053.1| - 6.5e-26 91.3 0.0 9.7e-26 90.8 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetases class I (W and Y) FAA_hydrolase PF01557.18 gi|212224818|ref|YP_002308054.1| - 7.3e-72 241.6 0.0 8.3e-72 241.4 0.0 1.0 1 0 0 1 1 1 1 Fumarylacetoacetate (FAA) hydrolase family DUF4493 PF14900.6 gi|212224819|ref|YP_002308055.1| - 0.15 11.9 0.0 0.22 11.4 0.0 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4493) OPT PF03169.15 gi|212224820|ref|YP_002308056.1| - 8e-68 229.6 52.0 9.2e-68 229.4 52.0 1.0 1 0 0 1 1 1 1 OPT oligopeptide transporter protein UPF0020 PF01170.18 gi|212224822|ref|YP_002308058.1| - 9.2e-38 129.9 0.0 3e-36 125.0 0.0 2.1 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 THUMP PF02926.17 gi|212224822|ref|YP_002308058.1| - 6.8e-30 104.1 2.2 1.2e-29 103.3 2.2 1.4 1 0 0 1 1 1 1 THUMP domain Methyltransf_31 PF13847.6 gi|212224822|ref|YP_002308058.1| - 1.7e-08 34.4 0.0 3.4e-08 33.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_15 PF09445.10 gi|212224822|ref|YP_002308058.1| - 3.5e-06 26.7 0.0 6.5e-06 25.8 0.0 1.3 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_25 PF13649.6 gi|212224822|ref|YP_002308058.1| - 4.1e-06 27.4 0.0 2.9e-05 24.7 0.0 2.3 2 0 0 2 2 2 1 Methyltransferase domain N6_N4_Mtase PF01555.18 gi|212224822|ref|YP_002308058.1| - 4.4e-05 23.3 0.1 0.00013 21.8 0.0 1.8 2 0 0 2 2 2 1 DNA methylase Methyltransf_11 PF08241.12 gi|212224822|ref|YP_002308058.1| - 9.6e-05 23.0 0.0 0.00042 20.9 0.0 2.1 2 0 0 2 2 2 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|212224822|ref|YP_002308058.1| - 0.0071 15.7 0.0 0.019 14.3 0.0 1.7 1 1 0 1 1 1 1 ubiE/COQ5 methyltransferase family MTS PF05175.14 gi|212224822|ref|YP_002308058.1| - 0.019 14.5 0.0 0.035 13.7 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase small domain Cons_hypoth95 PF03602.15 gi|212224822|ref|YP_002308058.1| - 0.06 13.0 0.0 0.12 12.0 0.0 1.5 1 0 0 1 1 1 0 Conserved hypothetical protein 95 Methyltransf_18 PF12847.7 gi|212224822|ref|YP_002308058.1| - 0.15 11.9 0.0 0.72 9.8 0.0 2.0 3 0 0 3 3 3 0 Methyltransferase domain MMR_HSR1 PF01926.23 gi|212224823|ref|YP_002308059.1| - 1.5e-17 63.7 0.3 6.5e-13 48.8 0.0 2.4 2 0 0 2 2 2 2 50S ribosome-binding GTPase FeoB_N PF02421.18 gi|212224823|ref|YP_002308059.1| - 1.9e-12 47.0 0.2 2.8e-06 26.9 0.1 2.3 2 0 0 2 2 2 2 Ferrous iron transport protein B RsgA_GTPase PF03193.16 gi|212224823|ref|YP_002308059.1| - 6.4e-10 39.2 0.1 1.6e-09 37.9 0.1 1.6 1 1 0 1 1 1 1 RsgA GTPase Dynamin_N PF00350.23 gi|212224823|ref|YP_002308059.1| - 3e-07 30.6 0.4 0.0069 16.5 0.0 3.0 2 1 1 3 3 3 2 Dynamin family Arf PF00025.21 gi|212224823|ref|YP_002308059.1| - 1.2e-06 28.1 1.8 0.0093 15.4 0.1 2.2 2 0 0 2 2 2 2 ADP-ribosylation factor family GTP_EFTU PF00009.27 gi|212224823|ref|YP_002308059.1| - 5.7e-06 26.0 0.4 0.00033 20.3 0.0 3.3 3 1 0 3 3 3 1 Elongation factor Tu GTP binding domain MMR_HSR1_Xtn PF16897.5 gi|212224823|ref|YP_002308059.1| - 0.0078 16.2 0.0 0.017 15.1 0.0 1.6 1 0 0 1 1 1 1 C-terminal region of MMR_HSR1 domain Roc PF08477.13 gi|212224823|ref|YP_002308059.1| - 0.05 13.8 0.5 0.86 9.8 0.1 2.4 2 0 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase cobW PF02492.19 gi|212224823|ref|YP_002308059.1| - 0.054 13.1 0.8 0.29 10.7 0.0 2.0 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain AAA_24 PF13479.6 gi|212224823|ref|YP_002308059.1| - 0.16 11.7 0.4 0.3 10.8 0.4 1.4 1 0 0 1 1 1 0 AAA domain Ras PF00071.22 gi|212224823|ref|YP_002308059.1| - 0.19 11.4 0.1 19 4.8 0.1 2.2 2 0 0 2 2 2 0 Ras family NTPase_1 PF03266.15 gi|212224823|ref|YP_002308059.1| - 0.91 9.4 5.7 5 7.0 0.4 3.0 3 1 0 3 3 3 0 NTPase DUF515 PF04415.12 gi|212224824|ref|YP_002308060.1| - 5.7e-143 476.5 19.7 6.5e-143 476.4 19.7 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF515) GA PF01468.17 gi|212224824|ref|YP_002308060.1| - 0.00084 19.6 17.7 0.16 12.3 8.1 4.3 3 1 0 3 3 3 2 GA module GA-like PF17573.2 gi|212224824|ref|YP_002308060.1| - 0.014 15.3 12.0 0.77 9.7 0.3 4.2 4 0 0 4 4 4 0 GA-like domain DUF2229 PF09989.9 gi|212224824|ref|YP_002308060.1| - 0.016 14.9 6.6 0.35 10.5 2.4 2.5 2 1 0 2 2 2 0 CoA enzyme activase uncharacterised domain (DUF2229) ABC2_membrane_2 PF12679.7 gi|212224824|ref|YP_002308060.1| - 0.018 14.3 0.2 0.021 14.1 0.2 1.3 1 0 0 1 1 1 0 ABC-2 family transporter protein SSP160 PF06933.11 gi|212224824|ref|YP_002308060.1| - 0.15 10.2 11.5 0.14 10.3 9.0 1.8 2 0 0 2 2 2 0 Special lobe-specific silk protein SSP160 DUF4330 PF14221.6 gi|212224824|ref|YP_002308060.1| - 0.19 11.9 10.1 0.036 14.3 2.5 2.8 2 2 1 3 3 3 0 Domain of unknown function (DUF4330) Insulin_TMD PF17870.1 gi|212224824|ref|YP_002308060.1| - 0.21 11.7 2.1 0.25 11.4 0.0 2.2 3 0 0 3 3 3 0 Insulin receptor trans-membrane segment FtsX_ECD PF18075.1 gi|212224824|ref|YP_002308060.1| - 0.28 11.8 6.7 4.3 8.0 5.8 3.0 2 1 0 2 2 2 0 FtsX extracellular domain DUF3365 PF11845.8 gi|212224824|ref|YP_002308060.1| - 1.7 8.9 5.3 0.54 10.6 1.5 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3365) Fer2_BFD PF04324.15 gi|212224824|ref|YP_002308060.1| - 2.4 8.6 3.5 27 5.2 0.0 3.4 3 0 0 3 3 3 0 BFD-like [2Fe-2S] binding domain Band_7 PF01145.25 gi|212224824|ref|YP_002308060.1| - 6.3 6.8 9.1 14 5.7 0.0 2.4 2 0 0 2 2 2 0 SPFH domain / Band 7 family Phage_attach PF05354.11 gi|212224825|ref|YP_002308061.1| - 0.079 12.8 0.0 0.16 11.8 0.0 1.5 1 0 0 1 1 1 0 Phage Head-Tail Attachment T2SSE PF00437.20 gi|212224826|ref|YP_002308062.1| - 3.7e-65 219.7 0.0 5.8e-65 219.1 0.0 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein FtsK_SpoIIIE PF01580.18 gi|212224826|ref|YP_002308062.1| - 0.00028 20.3 0.2 0.00061 19.2 0.2 1.5 1 0 0 1 1 1 1 FtsK/SpoIIIE family Zeta_toxin PF06414.12 gi|212224826|ref|YP_002308062.1| - 0.0029 16.9 0.1 0.0058 15.9 0.1 1.4 1 0 0 1 1 1 1 Zeta toxin AAA_29 PF13555.6 gi|212224826|ref|YP_002308062.1| - 0.0064 16.2 0.1 0.013 15.2 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain ABC_tran PF00005.27 gi|212224826|ref|YP_002308062.1| - 0.024 15.1 0.0 0.058 13.9 0.0 1.6 1 0 0 1 1 1 0 ABC transporter AAA_18 PF13238.6 gi|212224826|ref|YP_002308062.1| - 0.027 15.0 0.3 5.8 7.5 0.0 2.7 2 0 0 2 2 2 0 AAA domain AAA_19 PF13245.6 gi|212224826|ref|YP_002308062.1| - 0.038 14.3 0.3 0.1 12.9 0.3 1.7 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|212224826|ref|YP_002308062.1| - 0.11 12.9 0.0 0.33 11.3 0.0 1.8 2 0 0 2 2 2 0 AAA ATPase domain AAA_28 PF13521.6 gi|212224826|ref|YP_002308062.1| - 0.12 12.6 0.2 2 8.7 0.1 2.3 2 0 0 2 2 2 0 AAA domain AAA_23 PF13476.6 gi|212224826|ref|YP_002308062.1| - 0.62 10.5 5.9 0.38 11.2 1.2 2.5 2 0 0 2 2 2 0 AAA domain T2SSF PF00482.23 gi|212224827|ref|YP_002308063.1| - 2.4e-23 82.4 1.9 2.4e-23 82.4 1.9 2.9 3 0 0 3 3 3 1 Type II secretion system (T2SS), protein F Stealth_CR3 PF17102.5 gi|212224827|ref|YP_002308063.1| - 0.048 13.6 0.1 0.24 11.4 0.0 2.3 2 0 0 2 2 2 0 Stealth protein CR3, conserved region 3 GvpL_GvpF PF06386.11 gi|212224827|ref|YP_002308063.1| - 0.054 13.4 0.1 0.095 12.6 0.1 1.3 1 0 0 1 1 1 0 Gas vesicle synthesis protein GvpL/GvpF AHD PF17793.1 gi|212224827|ref|YP_002308063.1| - 0.14 11.9 0.5 25 4.8 0.4 2.6 2 0 0 2 2 2 0 ANC1 homology domain (AHD) OmpH PF03938.14 gi|212224827|ref|YP_002308063.1| - 0.15 12.4 3.6 0.33 11.3 3.6 1.5 1 0 0 1 1 1 0 Outer membrane protein (OmpH-like) DUF677 PF05055.12 gi|212224827|ref|YP_002308063.1| - 0.16 10.8 2.0 0.33 9.8 0.3 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF677) DMSP_lyase PF16867.5 gi|212224827|ref|YP_002308063.1| - 0.22 11.2 0.1 0.43 10.2 0.1 1.4 1 0 0 1 1 1 0 Dimethlysulfonioproprionate lyase RseC_MucC PF04246.12 gi|212224827|ref|YP_002308063.1| - 0.56 10.2 8.7 1.7 8.6 2.5 2.4 2 0 0 2 2 2 0 Positive regulator of sigma(E), RseC/MucC Med21 PF11221.8 gi|212224827|ref|YP_002308063.1| - 6.4 7.0 7.2 11 6.3 7.2 1.3 1 0 0 1 1 1 0 Subunit 21 of Mediator complex T2SSF PF00482.23 gi|212224828|ref|YP_002308064.1| - 1e-15 57.8 1.0 1e-15 57.8 1.0 2.2 2 0 0 2 2 2 1 Type II secretion system (T2SS), protein F Phage_holin_3_3 PF16083.5 gi|212224828|ref|YP_002308064.1| - 0.046 13.8 0.1 0.046 13.8 0.1 3.1 3 0 0 3 3 3 0 LydA holin phage, holin superfamily III FKBP_C PF00254.28 gi|212224829|ref|YP_002308065.1| - 1.4e-20 73.4 0.0 2.3e-20 72.7 0.0 1.4 1 1 0 1 1 1 1 FKBP-type peptidyl-prolyl cis-trans isomerase DUF2118 PF09891.9 gi|212224831|ref|YP_002308067.1| - 1.2e-51 174.7 1.1 1.3e-51 174.5 1.1 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2118) DUF3954 PF13128.6 gi|212224831|ref|YP_002308067.1| - 0.042 13.7 0.1 3.2 7.6 0.1 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3954) DUF4129 PF13559.6 gi|212224832|ref|YP_002308068.1| - 1.5e-06 28.3 0.0 2.6e-06 27.6 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4129) DUF981 PF06168.11 gi|212224832|ref|YP_002308068.1| - 0.00025 21.0 3.2 0.004 17.1 0.7 2.2 2 0 0 2 2 2 1 Protein of unknown function (DUF981) DUF5305 PF17231.2 gi|212224832|ref|YP_002308068.1| - 0.00069 19.1 0.0 0.8 9.1 0.0 2.2 2 0 0 2 2 2 2 Family of unknown function (DUF5305) DUF4064 PF13273.6 gi|212224832|ref|YP_002308068.1| - 0.0019 18.4 1.3 0.5 10.7 0.0 2.5 2 1 0 2 2 2 1 Protein of unknown function (DUF4064) DUF4381 PF14316.6 gi|212224832|ref|YP_002308068.1| - 0.0027 17.9 0.0 4.3 7.6 0.0 2.8 3 0 0 3 3 3 2 Domain of unknown function (DUF4381) DUF2070 PF09843.9 gi|212224832|ref|YP_002308068.1| - 0.0055 15.1 1.4 0.008 14.5 1.4 1.2 1 0 0 1 1 1 1 Predicted membrane protein (DUF2070) DUF1218 PF06749.12 gi|212224832|ref|YP_002308068.1| - 0.012 16.1 0.6 0.52 10.9 0.2 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1218) 7TMR-DISM_7TM PF07695.11 gi|212224832|ref|YP_002308068.1| - 0.015 15.2 5.7 0.082 12.8 1.5 2.2 2 0 0 2 2 2 0 7TM diverse intracellular signalling DUF2681 PF10883.8 gi|212224832|ref|YP_002308068.1| - 0.025 15.0 0.6 4.3 7.8 0.0 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF2681) Peptidase_M56 PF05569.11 gi|212224832|ref|YP_002308068.1| - 0.088 12.0 0.0 0.13 11.5 0.0 1.2 1 0 0 1 1 1 0 BlaR1 peptidase M56 DUF2207 PF09972.9 gi|212224832|ref|YP_002308068.1| - 0.09 11.5 2.7 3 6.5 1.6 2.0 1 1 1 2 2 2 0 Predicted membrane protein (DUF2207) IRK PF01007.20 gi|212224832|ref|YP_002308068.1| - 0.12 12.2 0.1 0.5 10.2 0.0 2.0 2 0 0 2 2 2 0 Inward rectifier potassium channel transmembrane domain CcmH PF03918.14 gi|212224832|ref|YP_002308068.1| - 0.14 11.5 0.6 0.3 10.4 0.0 1.8 3 0 0 3 3 3 0 Cytochrome C biogenesis protein DUF4199 PF13858.6 gi|212224832|ref|YP_002308068.1| - 0.15 12.5 6.8 0.91 9.9 2.4 2.4 2 1 0 2 2 2 0 Protein of unknown function (DUF4199) DUF4131 PF13567.6 gi|212224832|ref|YP_002308068.1| - 0.19 11.4 5.5 0.47 10.1 1.1 2.7 2 1 1 3 3 3 0 Domain of unknown function (DUF4131) RCR PF12273.8 gi|212224832|ref|YP_002308068.1| - 0.27 11.9 1.5 10 6.8 0.0 2.2 2 0 0 2 2 2 0 Chitin synthesis regulation, resistance to Congo red DUF1673 PF07895.11 gi|212224832|ref|YP_002308068.1| - 0.29 10.8 4.8 1.2 8.8 0.2 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF1673) DUF5058 PF16481.5 gi|212224832|ref|YP_002308068.1| - 0.39 10.4 2.3 1.3 8.7 0.1 2.3 2 1 0 2 2 2 0 Domain of unknown function (DUF5058) MARVEL PF01284.23 gi|212224832|ref|YP_002308068.1| - 1 9.4 9.4 1.3 9.1 2.2 2.2 1 1 1 2 2 2 0 Membrane-associating domain DUF4131 PF13567.6 gi|212224833|ref|YP_002308069.1| - 0.045 13.4 0.8 0.056 13.1 0.8 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) Phage_holin_3_6 PF07332.11 gi|212224833|ref|YP_002308069.1| - 0.081 13.0 4.4 0.12 12.4 4.4 1.3 1 0 0 1 1 1 0 Putative Actinobacterial Holin-X, holin superfamily III AAA_3 PF07726.11 gi|212224834|ref|YP_002308070.1| - 8.1e-69 229.5 0.1 1.4e-68 228.7 0.1 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_lid_2 PF17863.1 gi|212224834|ref|YP_002308070.1| - 3e-21 75.0 0.1 6.2e-21 74.0 0.1 1.5 1 0 0 1 1 1 1 AAA lid domain AAA_5 PF07728.14 gi|212224834|ref|YP_002308070.1| - 5.2e-13 49.2 0.0 2.8e-12 46.8 0.0 2.2 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA PF00004.29 gi|212224834|ref|YP_002308070.1| - 1.4e-05 25.5 0.0 2.4e-05 24.8 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.12 gi|212224834|ref|YP_002308070.1| - 2.1e-05 24.3 0.4 0.0082 15.9 0.0 3.0 2 1 0 2 2 2 1 Holliday junction DNA helicase RuvB P-loop domain Sigma54_activat PF00158.26 gi|212224834|ref|YP_002308070.1| - 0.00011 22.0 0.0 0.00048 19.9 0.0 1.9 2 0 0 2 2 2 1 Sigma-54 interaction domain MCM PF00493.23 gi|212224834|ref|YP_002308070.1| - 0.0049 16.0 0.0 0.0093 15.1 0.0 1.4 1 1 0 1 1 1 1 MCM P-loop domain Tra_M PF05261.11 gi|212224834|ref|YP_002308070.1| - 0.05 13.6 0.0 0.11 12.5 0.0 1.5 1 0 0 1 1 1 0 TraM protein, DNA-binding MCM_lid PF17855.1 gi|212224834|ref|YP_002308070.1| - 0.054 13.9 0.1 0.12 12.8 0.1 1.6 1 0 0 1 1 1 0 MCM AAA-lid domain DUF58 PF01882.18 gi|212224835|ref|YP_002308071.1| - 3e-22 78.7 0.0 6.2e-22 77.7 0.0 1.6 1 0 0 1 1 1 1 Protein of unknown function DUF58 bMG10 PF17973.1 gi|212224835|ref|YP_002308071.1| - 0.00027 21.1 0.0 0.43 10.8 0.0 2.3 2 0 0 2 2 2 2 Bacterial Alpha-2-macroglobulin MG10 domain DUF4131 PF13567.6 gi|212224835|ref|YP_002308071.1| - 0.14 11.8 0.2 0.24 11.0 0.2 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) O-antigen_lig PF13425.6 gi|212224836|ref|YP_002308072.1| - 0.0075 15.1 2.6 0.0086 14.9 2.6 1.1 1 0 0 1 1 1 1 O-antigen ligase like membrane protein DUF3488 PF11992.8 gi|212224836|ref|YP_002308072.1| - 4.7 6.1 11.1 5.6 5.8 11.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3488) PfkB PF00294.24 gi|212224837|ref|YP_002308073.1| - 1e-39 136.6 0.0 1.3e-39 136.3 0.0 1.1 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Phos_pyr_kin PF08543.12 gi|212224837|ref|YP_002308073.1| - 5.4e-07 29.3 0.0 8.7e-07 28.6 0.0 1.2 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase ChuX_HutX PF06228.13 gi|212224837|ref|YP_002308073.1| - 0.036 13.8 0.0 0.17 11.7 0.0 1.9 2 0 0 2 2 2 0 Haem utilisation ChuX/HutX Peptidase_M32 PF02074.15 gi|212224838|ref|YP_002308074.1| - 4.9e-162 540.1 0.0 5.6e-162 539.9 0.0 1.0 1 0 0 1 1 1 1 Carboxypeptidase Taq (M32) metallopeptidase DUF4238 PF14022.6 gi|212224838|ref|YP_002308074.1| - 0.098 12.2 0.1 0.16 11.5 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF4238) ASCH PF04266.14 gi|212224839|ref|YP_002308075.1| - 2.1e-15 57.2 0.4 2.4e-15 57.0 0.4 1.0 1 0 0 1 1 1 1 ASCH domain DUF3850 PF12961.7 gi|212224839|ref|YP_002308075.1| - 0.049 13.7 0.1 0.1 12.7 0.0 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF3850) EFP_N PF08207.12 gi|212224839|ref|YP_002308075.1| - 0.063 13.3 0.8 0.93 9.6 0.1 2.2 2 0 0 2 2 2 0 Elongation factor P (EF-P) KOW-like domain FAD_binding_3 PF01494.19 gi|212224840|ref|YP_002308076.1| - 2.6e-19 69.7 0.1 1.4e-14 54.2 0.0 2.4 2 1 0 2 2 2 2 FAD binding domain NAD_binding_8 PF13450.6 gi|212224840|ref|YP_002308076.1| - 1.1e-05 25.6 2.0 9.1e-05 22.6 0.1 2.7 3 0 0 3 3 3 1 NAD(P)-binding Rossmann-like domain Thi4 PF01946.17 gi|212224840|ref|YP_002308076.1| - 3e-05 23.4 0.2 9.1e-05 21.8 0.1 1.8 2 0 0 2 2 2 1 Thi4 family DAO PF01266.24 gi|212224840|ref|YP_002308076.1| - 6.3e-05 22.7 0.4 0.013 15.1 0.2 2.3 1 1 1 2 2 2 2 FAD dependent oxidoreductase Trp_halogenase PF04820.14 gi|212224840|ref|YP_002308076.1| - 0.00014 20.9 0.5 0.097 11.5 0.1 2.8 2 1 1 3 3 3 2 Tryptophan halogenase Lycopene_cycl PF05834.12 gi|212224840|ref|YP_002308076.1| - 0.00049 19.3 0.0 0.0038 16.3 0.0 2.0 2 0 0 2 2 2 1 Lycopene cyclase protein HI0933_like PF03486.14 gi|212224840|ref|YP_002308076.1| - 0.0008 18.2 0.1 0.0015 17.3 0.1 1.4 1 0 0 1 1 1 1 HI0933-like protein Pyr_redox_2 PF07992.14 gi|212224840|ref|YP_002308076.1| - 0.013 14.8 0.1 0.024 13.9 0.1 1.4 1 1 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase TrkA_N PF02254.18 gi|212224840|ref|YP_002308076.1| - 0.089 13.1 0.0 0.23 11.8 0.0 1.7 1 0 0 1 1 1 0 TrkA-N domain FAD_binding_2 PF00890.24 gi|212224840|ref|YP_002308076.1| - 0.097 11.7 0.3 0.18 10.9 0.3 1.4 1 0 0 1 1 1 0 FAD binding domain Sacchrp_dh_NADP PF03435.18 gi|212224840|ref|YP_002308076.1| - 0.16 12.2 0.2 0.39 11.0 0.2 1.6 1 0 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain FAD_oxidored PF12831.7 gi|212224840|ref|YP_002308076.1| - 0.17 11.2 0.0 0.22 10.8 0.0 1.2 1 0 0 1 1 1 0 FAD dependent oxidoreductase Peptidase_C15 PF01470.17 gi|212224841|ref|YP_002308077.1| - 1.8e-76 256.8 0.1 2e-76 256.7 0.1 1.0 1 0 0 1 1 1 1 Pyroglutamyl peptidase DUF460 PF04312.13 gi|212224842|ref|YP_002308078.1| - 1.6e-49 167.2 0.0 3.3e-49 166.2 0.0 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF460) acVLRF1 PF18859.1 gi|212224842|ref|YP_002308078.1| - 1.4e-05 25.4 0.1 1.4e-05 25.4 0.1 2.4 2 0 0 2 2 2 1 Actinobacteria/chloroflexi VLRF1 release factor GAS PF13851.6 gi|212224842|ref|YP_002308078.1| - 0.00079 18.8 5.0 0.00079 18.8 5.0 2.3 3 0 0 3 3 3 1 Growth-arrest specific micro-tubule binding GFO_IDH_MocA PF01408.22 gi|212224842|ref|YP_002308078.1| - 0.0043 17.9 0.0 0.011 16.6 0.0 1.7 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold SlyX PF04102.12 gi|212224842|ref|YP_002308078.1| - 0.014 16.0 4.2 0.014 16.0 4.2 4.1 5 1 1 6 6 4 0 SlyX Shugoshin_N PF07558.11 gi|212224842|ref|YP_002308078.1| - 0.023 14.6 2.7 0.023 14.6 2.7 2.7 4 0 0 4 4 4 0 Shugoshin N-terminal coiled-coil region V_ATPase_I PF01496.19 gi|212224842|ref|YP_002308078.1| - 0.17 9.8 4.3 0.31 8.9 4.3 1.3 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family BLOC1_2 PF10046.9 gi|212224842|ref|YP_002308078.1| - 0.3 11.4 4.4 0.91 9.9 0.3 2.7 1 1 1 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 BAR PF03114.18 gi|212224842|ref|YP_002308078.1| - 0.58 9.8 12.3 0.023 14.4 6.1 1.7 2 0 0 2 2 2 0 BAR domain DUF1664 PF07889.12 gi|212224842|ref|YP_002308078.1| - 0.82 9.7 5.9 0.82 9.7 2.0 2.8 2 1 1 3 3 3 0 Protein of unknown function (DUF1664) FAM76 PF16046.5 gi|212224842|ref|YP_002308078.1| - 1.1 8.6 4.6 1.8 7.8 4.6 1.3 1 0 0 1 1 1 0 FAM76 protein NYD-SP28_assoc PF14775.6 gi|212224842|ref|YP_002308078.1| - 1.5 8.9 7.6 0.081 13.0 0.9 2.4 2 0 0 2 2 2 0 Sperm tail C-terminal domain Fib_alpha PF08702.10 gi|212224842|ref|YP_002308078.1| - 2.2 8.5 7.5 1 9.5 0.7 2.6 1 1 1 2 2 2 0 Fibrinogen alpha/beta chain family DUF4140 PF13600.6 gi|212224842|ref|YP_002308078.1| - 2.4 8.7 27.3 0.76 10.2 2.2 4.8 4 1 1 5 5 5 0 N-terminal domain of unknown function (DUF4140) Swi5 PF07061.11 gi|212224842|ref|YP_002308078.1| - 4.2 7.5 8.6 16 5.6 0.3 3.5 2 1 1 3 3 3 0 Swi5 FlaC_arch PF05377.11 gi|212224842|ref|YP_002308078.1| - 4.8 7.6 11.1 21 5.6 1.5 3.6 3 0 0 3 3 3 0 Flagella accessory protein C (FlaC) ATP_bind_3 PF01171.20 gi|212224843|ref|YP_002308079.1| - 7e-16 58.5 0.0 1.6e-15 57.3 0.0 1.7 1 1 0 1 1 1 1 PP-loop family tRNA_Me_trans PF03054.16 gi|212224843|ref|YP_002308079.1| - 3.9e-05 22.6 0.0 5.9e-05 22.0 0.0 1.2 1 0 0 1 1 1 1 tRNA methyl transferase Asn_synthase PF00733.21 gi|212224843|ref|YP_002308079.1| - 0.00019 21.3 0.0 0.00027 20.7 0.0 1.3 1 0 0 1 1 1 1 Asparagine synthase PAPS_reduct PF01507.19 gi|212224843|ref|YP_002308079.1| - 0.00025 21.1 0.0 0.00065 19.8 0.0 1.9 1 1 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family CTU2 PF10288.9 gi|212224843|ref|YP_002308079.1| - 0.0014 18.9 1.7 0.014 15.6 0.4 3.0 3 1 0 3 3 3 1 Cytoplasmic tRNA 2-thiolation protein 2 zn-ribbon_14 PF16503.5 gi|212224843|ref|YP_002308079.1| - 0.0034 16.9 2.2 0.0034 16.9 2.2 2.9 3 0 0 3 3 3 1 Zinc-ribbon Diphthami_syn_2 PF01902.17 gi|212224843|ref|YP_002308079.1| - 0.032 13.7 0.0 0.067 12.7 0.0 1.6 1 0 0 1 1 1 0 Diphthamide synthase C1_2 PF03107.16 gi|212224843|ref|YP_002308079.1| - 0.034 14.4 0.3 0.034 14.4 0.3 2.9 3 0 0 3 3 3 0 C1 domain NAD_synthase PF02540.17 gi|212224843|ref|YP_002308079.1| - 0.046 12.8 0.0 0.079 12.1 0.0 1.3 1 0 0 1 1 1 0 NAD synthase C5HCH PF17982.1 gi|212224843|ref|YP_002308079.1| - 0.22 11.7 0.3 0.22 11.7 0.3 2.5 2 0 0 2 2 2 0 NSD Cys-His rich domain Ribosomal_S14 PF00253.21 gi|212224843|ref|YP_002308079.1| - 0.37 10.6 5.8 2 8.3 0.6 2.6 2 0 0 2 2 2 0 Ribosomal protein S14p/S29e RecR PF02132.15 gi|212224843|ref|YP_002308079.1| - 1.1 8.9 10.9 0.081 12.5 2.1 2.9 3 0 0 3 3 3 0 RecR protein zf-ribbon_3 PF13248.6 gi|212224843|ref|YP_002308079.1| - 3.4 7.2 11.1 9.6 5.8 1.2 3.7 3 0 0 3 3 3 0 zinc-ribbon domain ATPase PF06745.13 gi|212224844|ref|YP_002308080.1| - 0.00015 21.2 0.0 0.00025 20.5 0.0 1.4 1 0 0 1 1 1 1 KaiC PAXNEB PF05625.11 gi|212224844|ref|YP_002308080.1| - 0.042 13.0 0.3 0.06 12.5 0.3 1.2 1 0 0 1 1 1 0 PAXNEB protein Peptidase_M50 PF02163.22 gi|212224845|ref|YP_002308081.1| - 1.9e-22 79.8 0.5 6.8e-20 71.4 0.5 2.2 1 1 0 1 1 1 1 Peptidase family M50 PDZ_2 PF13180.6 gi|212224845|ref|YP_002308081.1| - 2.3e-12 47.0 0.0 3.9e-12 46.3 0.0 1.3 1 0 0 1 1 1 1 PDZ domain PDZ_6 PF17820.1 gi|212224845|ref|YP_002308081.1| - 6e-09 35.6 0.1 1.1e-08 34.7 0.1 1.5 1 0 0 1 1 1 1 PDZ domain PDZ PF00595.24 gi|212224845|ref|YP_002308081.1| - 3.3e-07 30.6 0.1 6e-07 29.7 0.1 1.4 1 0 0 1 1 1 1 PDZ domain DctQ PF04290.12 gi|212224845|ref|YP_002308081.1| - 0.00052 19.9 1.0 0.00052 19.9 1.0 3.3 4 1 0 4 4 4 1 Tripartite ATP-independent periplasmic transporters, DctQ component VPS53_C PF16854.5 gi|212224845|ref|YP_002308081.1| - 0.21 11.5 0.1 0.36 10.7 0.1 1.3 1 0 0 1 1 1 0 Vacuolar protein sorting-associated protein 53 C-terminus Glycos_transf_2 PF00535.26 gi|212224846|ref|YP_002308082.1| - 7.5e-30 104.0 0.0 1e-29 103.5 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|212224846|ref|YP_002308082.1| - 1.6e-18 67.5 0.0 4.1e-18 66.1 0.0 1.5 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.9 gi|212224846|ref|YP_002308082.1| - 9.2e-18 64.7 0.0 1.4e-17 64.1 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Peptidase_M9 PF01752.17 gi|212224846|ref|YP_002308082.1| - 0.11 11.7 0.0 0.17 11.1 0.0 1.2 1 0 0 1 1 1 0 Collagenase Sulfatase PF00884.23 gi|212224847|ref|YP_002308083.1| - 2.3e-23 83.1 0.0 3.3e-23 82.6 0.0 1.2 1 0 0 1 1 1 1 Sulfatase Phosphodiest PF01663.22 gi|212224847|ref|YP_002308083.1| - 1.3e-06 28.2 0.0 0.004 16.8 0.0 2.3 2 0 0 2 2 2 2 Type I phosphodiesterase / nucleotide pyrophosphatase DUF229 PF02995.17 gi|212224847|ref|YP_002308083.1| - 0.00019 20.2 0.0 0.00027 19.7 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF229) PqqD PF05402.12 gi|212224847|ref|YP_002308083.1| - 0.099 13.0 0.0 9.1 6.7 0.0 2.5 2 0 0 2 2 2 0 Coenzyme PQQ synthesis protein D (PqqD) Glyco_transf_4 PF13439.6 gi|212224848|ref|YP_002308084.1| - 5.9e-15 55.7 0.0 8.8e-15 55.1 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|212224848|ref|YP_002308084.1| - 7.3e-09 36.3 0.0 1.1e-08 35.7 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_4_2 PF13477.6 gi|212224848|ref|YP_002308084.1| - 2.8e-08 33.9 0.1 4.9e-08 33.1 0.1 1.4 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glyco_trans_1_4 PF13692.6 gi|212224848|ref|YP_002308084.1| - 3.8e-05 24.1 0.0 8.4e-05 23.0 0.0 1.7 1 1 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.6 gi|212224848|ref|YP_002308084.1| - 5.4e-05 23.5 0.0 0.00019 21.8 0.0 1.9 2 1 0 2 2 2 1 Glycosyl transferases group 1 Glycos_transf_1 PF00534.20 gi|212224848|ref|YP_002308084.1| - 0.00041 19.9 0.6 0.0027 17.3 0.0 2.1 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_5 PF08323.11 gi|212224848|ref|YP_002308084.1| - 0.0017 18.1 0.4 0.0048 16.6 0.4 1.9 1 1 0 1 1 1 1 Starch synthase catalytic domain Glycos_transf_1 PF00534.20 gi|212224849|ref|YP_002308085.1| - 1.1e-08 34.8 0.0 1.7e-08 34.2 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Hexapep PF00132.24 gi|212224850|ref|YP_002308086.1| - 1.6e-14 53.0 2.6 4.5e-09 35.7 1.2 3.0 2 1 1 3 3 3 3 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 gi|212224850|ref|YP_002308086.1| - 1.4e-08 34.3 0.7 2.7e-05 23.8 0.2 2.8 2 1 1 3 3 3 2 Hexapeptide repeat of succinyl-transferase DegT_DnrJ_EryC1 PF01041.17 gi|212224851|ref|YP_002308087.1| - 4.5e-115 384.8 0.0 5.1e-115 384.6 0.0 1.0 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.21 gi|212224851|ref|YP_002308087.1| - 2.8e-07 30.1 0.0 4.3e-07 29.5 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase Cys_Met_Meta_PP PF01053.20 gi|212224851|ref|YP_002308087.1| - 3e-05 22.8 0.0 5.4e-05 21.9 0.0 1.3 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_1_2 PF00155.21 gi|212224851|ref|YP_002308087.1| - 3.2e-05 23.3 0.0 0.00033 20.0 0.0 2.0 2 0 0 2 2 2 1 Aminotransferase class I and II Aminotran_5 PF00266.19 gi|212224851|ref|YP_002308087.1| - 0.00028 20.0 0.0 0.00035 19.7 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V Polysacc_synt_2 PF02719.15 gi|212224852|ref|YP_002308088.1| - 6.1e-90 301.3 4.3 7.1e-90 301.1 4.3 1.0 1 0 0 1 1 1 1 Polysaccharide biosynthesis protein Epimerase PF01370.21 gi|212224852|ref|YP_002308088.1| - 1.6e-23 83.5 0.3 1.4e-22 80.4 0.3 1.9 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|212224852|ref|YP_002308088.1| - 4.1e-21 75.7 0.4 1.7e-20 73.7 0.4 1.9 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase 3Beta_HSD PF01073.19 gi|212224852|ref|YP_002308088.1| - 6.9e-14 51.5 2.7 1.1e-13 50.8 0.9 1.8 1 1 1 2 2 2 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.17 gi|212224852|ref|YP_002308088.1| - 2.7e-12 46.4 0.0 5e-11 42.2 0.0 2.0 1 1 0 1 1 1 1 RmlD substrate binding domain NAD_binding_4 PF07993.12 gi|212224852|ref|YP_002308088.1| - 5.9e-12 45.3 2.2 1.3e-10 40.9 1.4 2.7 1 1 1 2 2 2 1 Male sterility protein NAD_binding_10 PF13460.6 gi|212224852|ref|YP_002308088.1| - 6.7e-11 42.4 0.1 9.7e-11 41.9 0.1 1.3 1 0 0 1 1 1 1 NAD(P)H-binding adh_short PF00106.25 gi|212224852|ref|YP_002308088.1| - 4.2e-08 32.9 0.9 6.1e-08 32.3 0.9 1.3 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|212224852|ref|YP_002308088.1| - 4.4e-08 33.2 0.1 7.5e-08 32.5 0.1 1.3 1 0 0 1 1 1 1 KR domain Shikimate_DH PF01488.20 gi|212224852|ref|YP_002308088.1| - 5.4e-05 23.3 0.4 0.00012 22.1 0.4 1.6 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase NmrA PF05368.13 gi|212224852|ref|YP_002308088.1| - 0.0003 20.4 0.4 0.00041 20.0 0.4 1.4 1 1 0 1 1 1 1 NmrA-like family Sacchrp_dh_NADP PF03435.18 gi|212224852|ref|YP_002308088.1| - 0.0019 18.5 0.4 0.0037 17.5 0.1 1.6 2 0 0 2 2 2 1 Saccharopine dehydrogenase NADP binding domain TrkA_N PF02254.18 gi|212224852|ref|YP_002308088.1| - 0.021 15.1 0.4 0.046 14.0 0.3 1.8 1 1 0 1 1 1 0 TrkA-N domain F420_oxidored PF03807.17 gi|212224852|ref|YP_002308088.1| - 0.072 13.7 0.1 0.36 11.4 0.1 2.3 1 1 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent Polysacc_synt PF01943.17 gi|212224853|ref|YP_002308089.1| - 8.9e-30 104.0 31.5 8.9e-30 104.0 31.5 2.6 2 1 0 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt_3 PF13440.6 gi|212224853|ref|YP_002308089.1| - 1.4e-23 83.6 22.0 1.4e-23 83.6 22.0 2.3 2 0 0 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt_C PF14667.6 gi|212224853|ref|YP_002308089.1| - 1.6e-23 83.3 18.6 1.6e-23 83.3 18.6 4.1 3 2 0 3 3 3 1 Polysaccharide biosynthesis C-terminal domain MatE PF01554.18 gi|212224853|ref|YP_002308089.1| - 5.6e-16 58.6 48.6 1.7e-14 53.8 16.3 4.9 4 1 2 6 6 6 3 MatE MurJ PF03023.14 gi|212224853|ref|YP_002308089.1| - 0.0004 19.1 43.6 0.0004 19.1 43.6 1.8 1 1 0 1 1 1 1 Lipid II flippase MurJ DUF4504 PF14953.6 gi|212224853|ref|YP_002308089.1| - 0.039 13.4 0.2 0.039 13.4 0.2 1.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4504) TauE PF01925.19 gi|212224854|ref|YP_002308090.1| - 9.4e-42 143.3 28.7 1.1e-41 143.0 28.7 1.0 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE APS_kinase PF01583.20 gi|212224855|ref|YP_002308091.1| - 1.2e-60 204.0 0.0 1.4e-60 203.8 0.0 1.0 1 0 0 1 1 1 1 Adenylylsulphate kinase AAA_18 PF13238.6 gi|212224855|ref|YP_002308091.1| - 1.7e-08 35.1 0.0 3.4e-08 34.1 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|212224855|ref|YP_002308091.1| - 1e-07 32.2 0.0 1.4e-07 31.7 0.0 1.2 1 0 0 1 1 1 1 AAA domain CbiA PF01656.23 gi|212224855|ref|YP_002308091.1| - 1.1e-06 28.7 0.0 1.9e-06 27.9 0.0 1.4 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain SRP54 PF00448.22 gi|212224855|ref|YP_002308091.1| - 3e-06 27.0 0.0 4.7e-06 26.4 0.0 1.2 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain KTI12 PF08433.10 gi|212224855|ref|YP_002308091.1| - 3.1e-06 26.8 0.0 3.5e-06 26.7 0.0 1.2 1 0 0 1 1 1 1 Chromatin associated protein KTI12 NTPase_1 PF03266.15 gi|212224855|ref|YP_002308091.1| - 1.7e-05 24.8 0.1 3.2e-05 23.9 0.1 1.5 1 0 0 1 1 1 1 NTPase ParA PF10609.9 gi|212224855|ref|YP_002308091.1| - 5e-05 22.9 0.0 6.3e-05 22.5 0.0 1.2 1 0 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase Cytidylate_kin PF02224.18 gi|212224855|ref|YP_002308091.1| - 0.00022 21.1 1.5 0.047 13.4 0.4 3.2 2 1 0 2 2 2 1 Cytidylate kinase Zeta_toxin PF06414.12 gi|212224855|ref|YP_002308091.1| - 0.00031 20.1 0.0 0.00046 19.5 0.0 1.2 1 0 0 1 1 1 1 Zeta toxin IstB_IS21 PF01695.17 gi|212224855|ref|YP_002308091.1| - 0.00037 20.3 0.0 0.00045 20.0 0.0 1.2 1 0 0 1 1 1 1 IstB-like ATP binding protein MobB PF03205.14 gi|212224855|ref|YP_002308091.1| - 0.00042 20.2 0.1 0.00085 19.2 0.1 1.5 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B ABC_tran PF00005.27 gi|212224855|ref|YP_002308091.1| - 0.00042 20.8 0.0 0.00075 20.0 0.0 1.5 1 1 0 1 1 1 1 ABC transporter NACHT PF05729.12 gi|212224855|ref|YP_002308091.1| - 0.00046 20.1 0.1 0.00084 19.3 0.1 1.4 1 0 0 1 1 1 1 NACHT domain AAA_31 PF13614.6 gi|212224855|ref|YP_002308091.1| - 0.00062 19.7 0.0 0.00085 19.3 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA PF00004.29 gi|212224855|ref|YP_002308091.1| - 0.00065 20.1 0.0 0.0011 19.4 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) MeaB PF03308.16 gi|212224855|ref|YP_002308091.1| - 0.00074 18.6 0.0 0.0014 17.7 0.0 1.4 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_17 PF13207.6 gi|212224855|ref|YP_002308091.1| - 0.001 19.5 0.0 0.0019 18.6 0.0 1.4 1 0 0 1 1 1 1 AAA domain RNA_helicase PF00910.22 gi|212224855|ref|YP_002308091.1| - 0.0012 19.2 0.0 0.0018 18.6 0.0 1.5 1 0 0 1 1 1 1 RNA helicase AAA_28 PF13521.6 gi|212224855|ref|YP_002308091.1| - 0.002 18.4 0.0 0.0031 17.8 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|212224855|ref|YP_002308091.1| - 0.0021 18.3 0.0 0.0032 17.7 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_25 PF13481.6 gi|212224855|ref|YP_002308091.1| - 0.0028 17.2 0.2 0.0051 16.4 0.2 1.4 1 0 0 1 1 1 1 AAA domain Cytidylate_kin2 PF13189.6 gi|212224855|ref|YP_002308091.1| - 0.0029 17.7 0.1 0.47 10.6 0.0 2.2 1 1 0 2 2 2 1 Cytidylate kinase-like family AAA_24 PF13479.6 gi|212224855|ref|YP_002308091.1| - 0.0033 17.2 0.1 0.0048 16.6 0.1 1.3 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|212224855|ref|YP_002308091.1| - 0.0038 17.6 0.1 0.0056 17.1 0.1 1.4 1 1 0 1 1 1 1 AAA ATPase domain Thymidylate_kin PF02223.17 gi|212224855|ref|YP_002308091.1| - 0.0059 16.3 0.1 0.0091 15.7 0.1 1.5 1 1 0 1 1 1 1 Thymidylate kinase AAA_5 PF07728.14 gi|212224855|ref|YP_002308091.1| - 0.0061 16.6 0.0 0.009 16.0 0.0 1.3 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) PRK PF00485.18 gi|212224855|ref|YP_002308091.1| - 0.0078 16.0 0.0 0.014 15.1 0.0 1.5 1 1 0 1 1 1 1 Phosphoribulokinase / Uridine kinase family AAA_30 PF13604.6 gi|212224855|ref|YP_002308091.1| - 0.0078 16.0 0.0 0.012 15.4 0.0 1.3 1 0 0 1 1 1 1 AAA domain KAP_NTPase PF07693.14 gi|212224855|ref|YP_002308091.1| - 0.0085 15.4 0.0 0.0085 15.4 0.0 1.2 1 0 0 1 1 1 1 KAP family P-loop domain TsaE PF02367.17 gi|212224855|ref|YP_002308091.1| - 0.01 15.8 0.1 0.018 15.0 0.1 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE ATPase_2 PF01637.18 gi|212224855|ref|YP_002308091.1| - 0.013 15.4 0.0 0.018 15.0 0.0 1.3 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea MipZ PF09140.11 gi|212224855|ref|YP_002308091.1| - 0.014 14.7 0.0 0.019 14.2 0.0 1.2 1 0 0 1 1 1 0 ATPase MipZ RsgA_GTPase PF03193.16 gi|212224855|ref|YP_002308091.1| - 0.016 15.2 0.0 0.028 14.3 0.0 1.5 1 0 0 1 1 1 0 RsgA GTPase cobW PF02492.19 gi|212224855|ref|YP_002308091.1| - 0.02 14.5 0.0 0.032 13.8 0.0 1.3 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain TIP49 PF06068.13 gi|212224855|ref|YP_002308091.1| - 0.025 13.8 0.1 0.051 12.8 0.0 1.5 2 0 0 2 2 2 0 TIP49 P-loop domain AAA_29 PF13555.6 gi|212224855|ref|YP_002308091.1| - 0.026 14.3 0.1 0.048 13.4 0.1 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain NB-ARC PF00931.22 gi|212224855|ref|YP_002308091.1| - 0.04 13.1 0.0 0.063 12.4 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain RuvB_N PF05496.12 gi|212224855|ref|YP_002308091.1| - 0.044 13.5 0.0 0.092 12.5 0.0 1.5 1 0 0 1 1 1 0 Holliday junction DNA helicase RuvB P-loop domain ResIII PF04851.15 gi|212224855|ref|YP_002308091.1| - 0.046 13.7 0.0 0.38 10.7 0.1 1.9 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit CLP1_P PF16575.5 gi|212224855|ref|YP_002308091.1| - 0.046 13.5 0.0 0.069 12.9 0.0 1.3 1 0 0 1 1 1 0 mRNA cleavage and polyadenylation factor CLP1 P-loop Parvo_NS1 PF01057.17 gi|212224855|ref|YP_002308091.1| - 0.048 12.8 0.0 0.074 12.1 0.0 1.2 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 PhoH PF02562.16 gi|212224855|ref|YP_002308091.1| - 0.057 12.9 0.2 0.087 12.3 0.2 1.4 1 1 0 1 1 1 0 PhoH-like protein AAA_7 PF12775.7 gi|212224855|ref|YP_002308091.1| - 0.063 12.8 0.0 0.097 12.2 0.0 1.2 1 0 0 1 1 1 0 P-loop containing dynein motor region LpxK PF02606.14 gi|212224855|ref|YP_002308091.1| - 0.079 12.0 0.0 0.14 11.2 0.0 1.3 1 0 0 1 1 1 0 Tetraacyldisaccharide-1-P 4'-kinase Rad17 PF03215.15 gi|212224855|ref|YP_002308091.1| - 0.084 12.8 0.0 0.13 12.2 0.0 1.4 1 0 0 1 1 1 0 Rad17 P-loop domain TrwB_AAD_bind PF10412.9 gi|212224855|ref|YP_002308091.1| - 0.084 11.8 0.0 0.12 11.3 0.0 1.2 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain DUF2075 PF09848.9 gi|212224855|ref|YP_002308091.1| - 0.09 12.0 0.0 0.11 11.7 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) AAA_14 PF13173.6 gi|212224855|ref|YP_002308091.1| - 0.095 12.7 0.0 0.13 12.3 0.0 1.3 1 0 0 1 1 1 0 AAA domain Mg_chelatase PF01078.21 gi|212224855|ref|YP_002308091.1| - 0.11 11.9 0.0 0.15 11.4 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI T2SSE PF00437.20 gi|212224855|ref|YP_002308091.1| - 0.14 11.2 0.1 0.22 10.5 0.1 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein Pox_A32 PF04665.12 gi|212224855|ref|YP_002308091.1| - 0.14 11.6 0.2 1.1 8.6 0.0 2.0 2 0 0 2 2 2 0 Poxvirus A32 protein AAA_35 PF14516.6 gi|212224855|ref|YP_002308091.1| - 0.15 10.9 0.0 0.22 10.3 0.0 1.1 1 0 0 1 1 1 0 AAA-like domain SKI PF01202.22 gi|212224855|ref|YP_002308091.1| - 0.15 12.2 1.4 0.67 10.1 1.3 2.1 1 1 0 1 1 1 0 Shikimate kinase ATP_bind_1 PF03029.17 gi|212224855|ref|YP_002308091.1| - 0.19 11.5 0.0 0.31 10.8 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein Phosphodiest PF01663.22 gi|212224856|ref|YP_002308092.1| - 4.6e-61 207.4 0.1 5.7e-61 207.1 0.1 1.1 1 0 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase Sulfatase PF00884.23 gi|212224856|ref|YP_002308092.1| - 0.0076 15.7 0.0 0.11 11.9 0.0 2.1 2 0 0 2 2 2 1 Sulfatase DHHA1 PF02272.19 gi|212224857|ref|YP_002308093.1| - 1.3e-05 25.6 0.0 2.3e-05 24.8 0.0 1.5 1 1 0 1 1 1 1 DHHA1 domain DHH PF01368.20 gi|212224857|ref|YP_002308093.1| - 0.00039 20.6 0.0 0.00094 19.4 0.0 1.6 1 0 0 1 1 1 1 DHH family Cytidylate_kin2 PF13189.6 gi|212224857|ref|YP_002308093.1| - 0.059 13.5 0.3 3.6 7.7 0.1 2.2 2 0 0 2 2 2 0 Cytidylate kinase-like family ATP-sulfurylase PF01747.17 gi|212224858|ref|YP_002308094.1| - 4.4e-87 291.0 0.3 5.8e-87 290.6 0.3 1.2 1 0 0 1 1 1 1 ATP-sulfurylase PUA_2 PF14306.6 gi|212224858|ref|YP_002308094.1| - 1.4e-50 171.1 0.0 2.1e-50 170.5 0.0 1.3 1 0 0 1 1 1 1 PUA-like domain RHH_1 PF01402.21 gi|212224859|ref|YP_002308095.1| - 0.0019 18.0 1.1 0.036 14.0 0.0 2.8 2 1 1 3 3 3 1 Ribbon-helix-helix protein, copG family PG_binding_2 PF08823.11 gi|212224859|ref|YP_002308095.1| - 0.0068 16.7 1.0 0.014 15.7 0.9 1.6 1 1 1 2 2 2 1 Putative peptidoglycan binding domain CheR_N PF03705.15 gi|212224859|ref|YP_002308095.1| - 0.017 14.8 0.1 0.059 13.1 0.0 1.8 2 0 0 2 2 2 0 CheR methyltransferase, all-alpha domain DMAP_binding PF06464.11 gi|212224859|ref|YP_002308095.1| - 0.069 14.0 1.1 0.1 13.5 1.1 1.2 1 0 0 1 1 1 0 DMAP1-binding Domain Cation_efflux PF01545.21 gi|212224860|ref|YP_002308096.1| - 5e-47 160.2 11.6 5.7e-47 160.0 11.6 1.0 1 0 0 1 1 1 1 Cation efflux family ZT_dimer PF16916.5 gi|212224860|ref|YP_002308096.1| - 1.5e-22 79.5 3.8 1.7e-22 79.3 2.8 1.6 2 0 0 2 2 2 1 Dimerisation domain of Zinc Transporter PAP2 PF01569.21 gi|212224860|ref|YP_002308096.1| - 6.5 6.5 13.5 0.32 10.8 1.0 3.7 3 2 0 4 4 4 0 PAP2 superfamily Pyridoxal_deC PF00282.19 gi|212224861|ref|YP_002308097.1| - 4.5e-33 114.5 0.0 1.7e-32 112.6 0.0 1.7 1 1 0 1 1 1 1 Pyridoxal-dependent decarboxylase conserved domain Aminotran_5 PF00266.19 gi|212224861|ref|YP_002308097.1| - 8.2e-13 48.0 0.0 1.6e-11 43.8 0.0 2.0 1 1 0 1 1 1 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.17 gi|212224861|ref|YP_002308097.1| - 2.9e-08 33.4 0.0 4.8e-08 32.7 0.0 1.3 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.21 gi|212224861|ref|YP_002308097.1| - 6.3e-06 25.7 0.0 1.6e-05 24.4 0.0 1.5 1 1 0 1 1 1 1 Beta-eliminating lyase Aminotran_1_2 PF00155.21 gi|212224861|ref|YP_002308097.1| - 0.0065 15.7 0.0 0.043 13.0 0.0 1.9 2 0 0 2 2 2 1 Aminotransferase class I and II SepSecS PF05889.13 gi|212224861|ref|YP_002308097.1| - 0.008 14.9 0.0 0.022 13.4 0.0 1.7 2 0 0 2 2 2 1 O-phosphoseryl-tRNA(Sec) selenium transferase, SepSecS Na_H_Exchanger PF00999.21 gi|212224862|ref|YP_002308098.1| - 4.8e-56 190.2 46.9 6.3e-56 189.8 46.9 1.0 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family DUF131 PF01998.17 gi|212224863|ref|YP_002308099.1| - 1.8e-12 46.7 10.7 1.8e-12 46.7 10.7 1.9 1 1 1 2 2 2 1 Protein of unknown function DUF131 DUF2207 PF09972.9 gi|212224863|ref|YP_002308099.1| - 7.4 5.2 8.1 9.1 4.9 8.1 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) HAD_2 PF13419.6 gi|212224864|ref|YP_002308100.1| - 3.2e-21 76.2 0.0 5e-21 75.6 0.0 1.3 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|212224864|ref|YP_002308100.1| - 4.6e-14 53.2 0.0 1.4e-13 51.6 0.0 1.8 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|212224864|ref|YP_002308100.1| - 1.7e-12 47.2 0.1 3.7e-12 46.1 0.0 1.6 2 0 0 2 2 2 1 HAD-hyrolase-like HAD PF12710.7 gi|212224864|ref|YP_002308100.1| - 1.3e-07 32.2 0.1 2.2e-07 31.5 0.1 1.4 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase NT5C PF06941.12 gi|212224864|ref|YP_002308100.1| - 0.00083 19.3 0.4 0.029 14.3 0.0 2.2 2 0 0 2 2 2 1 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C) Hydrolase_6 PF13344.6 gi|212224864|ref|YP_002308100.1| - 0.003 17.6 0.0 0.0073 16.4 0.0 1.6 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase PGP_phosphatase PF09419.10 gi|212224864|ref|YP_002308100.1| - 0.019 14.5 0.1 0.019 14.5 0.1 1.9 2 1 0 2 2 2 0 Mitochondrial PGP phosphatase 5_nucleotid PF05761.14 gi|212224864|ref|YP_002308100.1| - 0.065 12.1 0.0 0.13 11.1 0.0 1.4 1 1 0 1 1 1 0 5' nucleotidase family TM2 PF05154.16 gi|212224865|ref|YP_002308101.1| - 0.0097 16.2 0.2 0.0097 16.2 0.2 2.0 2 0 0 2 2 2 1 TM2 domain ThrE PF06738.12 gi|212224865|ref|YP_002308101.1| - 0.011 15.2 0.1 0.016 14.6 0.1 1.4 1 0 0 1 1 1 0 Putative threonine/serine exporter DUF1269 PF06897.12 gi|212224865|ref|YP_002308101.1| - 0.23 11.8 2.0 0.36 11.1 0.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1269) CARDB PF07705.11 gi|212224866|ref|YP_002308102.1| - 5.5e-20 71.5 1.4 1.7e-19 70.0 1.4 1.9 1 0 0 1 1 1 1 CARDB Chorein_N PF12624.7 gi|212224866|ref|YP_002308102.1| - 0.00081 19.5 0.1 2.6 8.2 0.0 3.4 3 0 0 3 3 3 1 N-terminal region of Chorein or VPS13 DUF4249 PF14054.6 gi|212224866|ref|YP_002308102.1| - 0.015 15.0 0.2 0.032 13.9 0.2 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4249) FATC PF02260.20 gi|212224866|ref|YP_002308102.1| - 1 9.2 3.8 22 5.0 0.0 3.3 3 0 0 3 3 3 0 FATC domain DUF1926 PF09095.11 gi|212224867|ref|YP_002308103.1| - 2.9e-74 250.2 0.0 5.8e-74 249.2 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF1926) Glyco_hydro_57 PF03065.15 gi|212224867|ref|YP_002308103.1| - 3e-59 200.8 0.6 1.5e-58 198.6 0.6 1.9 1 1 0 1 1 1 1 Glycosyl hydrolase family 57 DUF1925 PF09094.11 gi|212224867|ref|YP_002308103.1| - 7.8e-35 119.0 0.7 1.5e-34 118.1 0.7 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF1925) Glyco_hydro_38N PF01074.22 gi|212224867|ref|YP_002308103.1| - 3.6e-06 26.5 0.0 1.6e-05 24.4 0.0 1.9 2 0 0 2 2 2 1 Glycosyl hydrolases family 38 N-terminal domain CoA_binding_2 PF13380.6 gi|212224867|ref|YP_002308103.1| - 0.024 15.1 0.0 0.083 13.4 0.0 1.8 2 0 0 2 2 2 0 CoA binding domain ATP_bind_3 PF01171.20 gi|212224868|ref|YP_002308104.1| - 1.2e-12 47.9 0.0 2e-12 47.3 0.0 1.3 1 0 0 1 1 1 1 PP-loop family QueC PF06508.13 gi|212224868|ref|YP_002308104.1| - 1e-08 34.9 0.1 3e-07 30.1 0.0 2.3 2 0 0 2 2 2 1 Queuosine biosynthesis protein QueC PAPS_reduct PF01507.19 gi|212224868|ref|YP_002308104.1| - 2.7e-08 34.1 0.0 4.7e-08 33.3 0.0 1.4 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family tRNA_Me_trans PF03054.16 gi|212224868|ref|YP_002308104.1| - 7.1e-08 31.6 0.1 3.1e-07 29.5 0.1 1.9 1 1 0 1 1 1 1 tRNA methyl transferase ThiI PF02568.14 gi|212224868|ref|YP_002308104.1| - 2e-07 30.8 0.0 4.1e-07 29.8 0.0 1.4 1 0 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) NAD_synthase PF02540.17 gi|212224868|ref|YP_002308104.1| - 0.001 18.2 0.0 0.0025 17.0 0.0 1.5 2 0 0 2 2 2 1 NAD synthase RecR PF02132.15 gi|212224868|ref|YP_002308104.1| - 0.0035 16.9 0.6 0.0035 16.9 0.6 2.7 3 0 0 3 3 3 1 RecR protein Asn_synthase PF00733.21 gi|212224868|ref|YP_002308104.1| - 0.0043 16.8 0.0 0.0062 16.2 0.0 1.2 1 0 0 1 1 1 1 Asparagine synthase Rhodanese PF00581.20 gi|212224868|ref|YP_002308104.1| - 0.054 14.0 0.0 0.12 12.9 0.0 1.6 1 0 0 1 1 1 0 Rhodanese-like domain C1_2 PF03107.16 gi|212224868|ref|YP_002308104.1| - 0.081 13.3 7.1 2.6 8.4 0.9 3.5 3 0 0 3 3 3 0 C1 domain DUF1241 PF06840.11 gi|212224868|ref|YP_002308104.1| - 0.15 11.7 0.0 0.25 11.0 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1241) Transp_Tc5_C PF04236.15 gi|212224868|ref|YP_002308104.1| - 0.18 12.2 0.3 0.18 12.2 0.3 2.4 2 0 0 2 2 2 0 Tc5 transposase C-terminal domain zn-ribbon_14 PF16503.5 gi|212224868|ref|YP_002308104.1| - 2.4 7.7 8.4 0.13 11.8 2.2 2.1 2 0 0 2 2 2 0 Zinc-ribbon Pyr_redox_2 PF07992.14 gi|212224869|ref|YP_002308105.1| - 9.8e-14 51.3 1.2 7.8e-06 25.3 0.2 3.1 3 0 0 3 3 3 3 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|212224869|ref|YP_002308105.1| - 1.6e-08 34.1 0.0 0.0018 17.4 0.0 2.2 2 0 0 2 2 2 2 Glucose inhibited division protein A DAO PF01266.24 gi|212224869|ref|YP_002308105.1| - 5.4e-07 29.5 0.2 3.4e-05 23.6 0.1 2.3 2 0 0 2 2 2 1 FAD dependent oxidoreductase Thi4 PF01946.17 gi|212224869|ref|YP_002308105.1| - 9.5e-07 28.3 0.8 1.4e-06 27.8 0.1 1.6 2 0 0 2 2 2 1 Thi4 family HI0933_like PF03486.14 gi|212224869|ref|YP_002308105.1| - 1.4e-06 27.3 0.0 2.8e-06 26.3 0.0 1.4 1 0 0 1 1 1 1 HI0933-like protein FAD_binding_2 PF00890.24 gi|212224869|ref|YP_002308105.1| - 2.5e-06 26.9 0.3 8.9e-05 21.7 0.0 2.3 2 0 0 2 2 2 1 FAD binding domain NAD_binding_8 PF13450.6 gi|212224869|ref|YP_002308105.1| - 3.4e-06 27.2 0.0 3.1e-05 24.1 0.0 2.7 3 0 0 3 3 3 1 NAD(P)-binding Rossmann-like domain Lycopene_cycl PF05834.12 gi|212224869|ref|YP_002308105.1| - 0.00017 20.7 0.0 0.00024 20.3 0.0 1.2 1 0 0 1 1 1 1 Lycopene cyclase protein Pyr_redox_3 PF13738.6 gi|212224869|ref|YP_002308105.1| - 0.00032 20.0 0.2 0.0014 18.0 0.1 2.0 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.19 gi|212224869|ref|YP_002308105.1| - 0.0014 17.9 0.0 0.0031 16.8 0.0 1.6 1 0 0 1 1 1 1 FAD binding domain NAD_binding_9 PF13454.6 gi|212224869|ref|YP_002308105.1| - 0.025 14.6 0.0 0.044 13.8 0.0 1.4 1 0 0 1 1 1 0 FAD-NAD(P)-binding FAD_oxidored PF12831.7 gi|212224869|ref|YP_002308105.1| - 0.11 11.9 0.1 0.15 11.4 0.1 1.2 1 0 0 1 1 1 0 FAD dependent oxidoreductase CBS PF00571.28 gi|212224870|ref|YP_002308106.1| - 2.3e-28 98.4 7.9 2.2e-15 56.8 1.9 2.2 2 0 0 2 2 2 2 CBS domain Acetyltransf_10 PF13673.7 gi|212224870|ref|YP_002308106.1| - 0.0014 18.5 0.1 1.4 8.9 0.0 2.3 1 1 0 2 2 2 2 Acetyltransferase (GNAT) domain BiPBP_C PF06832.12 gi|212224870|ref|YP_002308106.1| - 0.0063 16.5 0.0 0.06 13.4 0.0 2.1 2 1 0 2 2 2 1 Penicillin-Binding Protein C-terminus Family Acetyltransf_1 PF00583.25 gi|212224870|ref|YP_002308106.1| - 0.011 16.0 0.0 0.023 14.9 0.0 1.7 1 1 0 1 1 1 0 Acetyltransferase (GNAT) family Na_H_Exchanger PF00999.21 gi|212224871|ref|YP_002308107.1| - 2.5e-67 227.3 42.5 2.8e-67 227.2 42.5 1.0 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family Herpes_LMP1 PF05297.11 gi|212224871|ref|YP_002308107.1| - 0.85 8.8 3.8 1.3 8.2 3.8 1.3 1 0 0 1 1 1 0 Herpesvirus latent membrane protein 1 (LMP1) PsbW PF07123.12 gi|212224871|ref|YP_002308107.1| - 3.7 7.6 6.1 5.2 7.1 1.0 2.7 3 0 0 3 3 3 0 Photosystem II reaction centre W protein (PsbW) MarC PF01914.17 gi|212224872|ref|YP_002308108.1| - 2.5e-30 105.4 21.8 3e-30 105.2 21.8 1.0 1 0 0 1 1 1 1 MarC family integral membrane protein EamA PF00892.20 gi|212224872|ref|YP_002308108.1| - 1.5 9.0 21.1 0.35 11.0 11.8 2.8 1 1 1 2 2 2 0 EamA-like transporter family HKR_ArcB_TM PF18415.1 gi|212224872|ref|YP_002308108.1| - 1.8 9.4 17.1 4.3 8.2 1.3 3.9 2 2 2 4 4 4 0 Histidine kinase receptor ArcB trans-membrane domain DUF2393 PF09624.10 gi|212224872|ref|YP_002308108.1| - 6.4 6.8 10.3 3.8 7.5 5.7 2.4 2 1 0 2 2 2 0 Protein of unknown function (DUF2393) CrgA PF06781.12 gi|212224872|ref|YP_002308108.1| - 9 6.4 11.0 1.4 9.0 4.3 2.2 2 0 0 2 2 2 0 Cell division protein CrgA tRNA-synt_His PF13393.6 gi|212224873|ref|YP_002308109.1| - 6.8e-67 225.9 0.0 8.5e-67 225.6 0.0 1.1 1 0 0 1 1 1 1 Histidyl-tRNA synthetase HGTP_anticodon PF03129.20 gi|212224873|ref|YP_002308109.1| - 2.5e-21 75.6 0.4 6.2e-21 74.3 0.4 1.7 1 0 0 1 1 1 1 Anticodon binding domain tRNA-synt_2b PF00587.25 gi|212224873|ref|YP_002308109.1| - 3.3e-15 56.5 0.0 6.8e-15 55.5 0.0 1.5 1 1 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) tRNA-synt_2 PF00152.20 gi|212224873|ref|YP_002308109.1| - 1.5e-05 24.3 1.8 0.004 16.3 0.6 2.8 2 1 0 2 2 2 2 tRNA synthetases class II (D, K and N) tRNA-synt_2d PF01409.20 gi|212224873|ref|YP_002308109.1| - 0.0025 17.4 0.0 0.0059 16.1 0.0 1.6 2 0 0 2 2 2 1 tRNA synthetases class II core domain (F) AP_endonuc_2 PF01261.24 gi|212224873|ref|YP_002308109.1| - 0.011 15.1 0.0 0.034 13.6 0.0 1.8 2 0 0 2 2 2 0 Xylose isomerase-like TIM barrel HGTP_anticodon2 PF12745.7 gi|212224873|ref|YP_002308109.1| - 0.017 14.6 0.0 0.025 14.1 0.0 1.2 1 0 0 1 1 1 0 Anticodon binding domain of tRNAs PLDc_2 PF13091.6 gi|212224875|ref|YP_002308111.1| - 1.2e-23 83.5 0.2 2.6e-23 82.4 0.1 1.6 2 0 0 2 2 2 1 PLD-like domain PLDc PF00614.22 gi|212224875|ref|YP_002308111.1| - 9.7e-05 22.4 0.1 0.00019 21.5 0.1 1.5 1 0 0 1 1 1 1 Phospholipase D Active site motif PP_kinase_C_1 PF17941.1 gi|212224875|ref|YP_002308111.1| - 0.001 18.6 0.0 0.0016 18.0 0.0 1.4 1 0 0 1 1 1 1 Polyphosphate kinase C-terminal domain 1 Peptidase_M13_N PF05649.13 gi|212224875|ref|YP_002308111.1| - 0.018 14.8 0.1 0.021 14.5 0.1 1.1 1 0 0 1 1 1 0 Peptidase family M13 DUF1577 PF07614.11 gi|212224875|ref|YP_002308111.1| - 0.055 12.6 0.0 0.088 11.9 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1577) Uteroglobin PF01099.17 gi|212224875|ref|YP_002308111.1| - 0.11 12.9 0.4 0.19 12.1 0.4 1.4 1 0 0 1 1 1 0 Uteroglobin family YabA PF06156.13 gi|212224879|ref|YP_002308115.1| - 4.4e-07 30.5 3.8 5.7e-07 30.1 3.8 1.2 1 0 0 1 1 1 1 Initiation control protein YabA Fez1 PF06818.15 gi|212224879|ref|YP_002308115.1| - 0.0038 17.7 2.8 0.0039 17.7 2.8 1.1 1 0 0 1 1 1 1 Fez1 HAUS-augmin3 PF14932.6 gi|212224879|ref|YP_002308115.1| - 0.0051 16.4 2.3 0.0062 16.1 2.3 1.2 1 0 0 1 1 1 1 HAUS augmin-like complex subunit 3 Csm1_N PF18504.1 gi|212224879|ref|YP_002308115.1| - 0.01 16.2 7.9 0.091 13.1 1.9 2.1 1 1 1 2 2 2 2 Csm1 N-terminal domain Lzipper-MIP1 PF14389.6 gi|212224879|ref|YP_002308115.1| - 0.014 15.6 2.6 0.014 15.6 2.6 2.1 2 0 0 2 2 2 0 Leucine-zipper of ternary complex factor MIP1 TMF_TATA_bd PF12325.8 gi|212224879|ref|YP_002308115.1| - 0.027 14.7 10.3 0.032 14.5 10.3 1.0 1 0 0 1 1 1 0 TATA element modulatory factor 1 TATA binding Med9 PF07544.13 gi|212224879|ref|YP_002308115.1| - 0.028 14.5 1.5 0.028 14.5 1.5 2.3 1 1 0 2 2 2 0 RNA polymerase II transcription mediator complex subunit 9 ABC_tran_CTD PF16326.5 gi|212224879|ref|YP_002308115.1| - 0.058 13.6 7.7 0.62 10.4 4.4 2.2 1 1 1 2 2 2 0 ABC transporter C-terminal domain TolA_bind_tri PF16331.5 gi|212224879|ref|YP_002308115.1| - 0.066 13.3 6.6 0.097 12.8 6.6 1.3 1 0 0 1 1 1 0 TolA binding protein trimerisation FapA PF03961.13 gi|212224879|ref|YP_002308115.1| - 0.075 11.6 3.1 0.083 11.5 3.1 1.0 1 0 0 1 1 1 0 Flagellar Assembly Protein A LRRFIP PF09738.9 gi|212224879|ref|YP_002308115.1| - 0.11 12.0 7.7 0.12 11.8 7.7 1.0 1 0 0 1 1 1 0 LRRFIP family CCDC92 PF14916.6 gi|212224879|ref|YP_002308115.1| - 0.3 10.9 4.0 8.9 6.2 0.8 2.6 1 1 1 2 2 2 0 Coiled-coil domain of unknown function DivIVA PF05103.13 gi|212224879|ref|YP_002308115.1| - 0.39 10.8 6.0 1.1 9.4 0.9 2.0 1 1 1 2 2 2 0 DivIVA protein Spc24 PF08286.11 gi|212224879|ref|YP_002308115.1| - 0.61 10.3 6.2 6.8 7.0 6.2 2.0 1 1 0 1 1 1 0 Spc24 subunit of Ndc80 ZapB PF06005.12 gi|212224879|ref|YP_002308115.1| - 0.64 10.5 12.2 1.9 9.0 12.2 1.7 1 1 0 1 1 1 0 Cell division protein ZapB Cnn_1N PF07989.11 gi|212224879|ref|YP_002308115.1| - 0.65 10.2 8.9 2.1 8.5 8.9 1.8 1 1 0 1 1 1 0 Centrosomin N-terminal motif 1 zf-C4H2 PF10146.9 gi|212224879|ref|YP_002308115.1| - 1.3 9.3 4.8 1.5 9.1 4.8 1.1 1 0 0 1 1 1 0 Zinc finger-containing protein Val_tRNA-synt_C PF10458.9 gi|212224879|ref|YP_002308115.1| - 2.2 8.6 9.5 4.5 7.6 6.6 2.5 1 1 1 2 2 2 0 Valyl tRNA synthetase tRNA binding arm DUF4635 PF15466.6 gi|212224879|ref|YP_002308115.1| - 2.8 7.5 10.7 0.078 12.5 3.0 1.9 1 1 1 2 2 2 0 Domain of unknown function (DUF4635) tRNA-synt_2c PF01411.19 gi|212224880|ref|YP_002308116.1| - 3.8e-159 530.7 0.0 5e-159 530.4 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (A) DHHA1 PF02272.19 gi|212224880|ref|YP_002308116.1| - 9.6e-20 71.4 5.8 2.9e-19 69.9 5.8 1.9 1 0 0 1 1 1 1 DHHA1 domain tRNA_SAD PF07973.14 gi|212224880|ref|YP_002308116.1| - 6.3e-16 58.2 0.4 3.1e-15 56.0 0.2 2.3 2 0 0 2 2 2 1 Threonyl and Alanyl tRNA synthetase second additional domain tRNA-synt_2e PF02091.15 gi|212224880|ref|YP_002308116.1| - 0.075 12.3 0.0 0.49 9.6 0.0 2.0 1 1 0 1 1 1 0 Glycyl-tRNA synthetase alpha subunit MmcB-like PF06319.12 gi|212224881|ref|YP_002308117.1| - 0.0012 18.5 0.0 0.0017 18.0 0.0 1.2 1 0 0 1 1 1 1 DNA repair protein MmcB-like PDDEXK_10 PF07788.11 gi|212224881|ref|YP_002308117.1| - 0.014 15.4 0.0 0.054 13.4 0.0 1.9 1 1 0 1 1 1 0 PD-(D/E)XK nuclease superfamily MTES_1575 PF18741.1 gi|212224881|ref|YP_002308117.1| - 0.02 15.1 0.0 0.029 14.5 0.0 1.2 1 0 0 1 1 1 0 REase_MTES_1575 LRRNT PF01462.18 gi|212224881|ref|YP_002308117.1| - 0.094 12.4 0.0 0.18 11.5 0.0 1.4 1 0 0 1 1 1 0 Leucine rich repeat N-terminal domain NIF3 PF01784.18 gi|212224883|ref|YP_002308119.1| - 3.1e-57 194.0 0.0 3.8e-57 193.7 0.0 1.0 1 0 0 1 1 1 1 NIF3 (NGG1p interacting factor 3) AP_endonuc_2 PF01261.24 gi|212224883|ref|YP_002308119.1| - 0.046 13.1 0.0 0.057 12.8 0.0 1.3 1 0 0 1 1 1 0 Xylose isomerase-like TIM barrel Radical_SAM PF04055.21 gi|212224884|ref|YP_002308120.1| - 3.8e-33 115.2 0.3 4e-32 111.9 0.1 2.7 2 1 0 2 2 2 1 Radical SAM superfamily Radical_SAM_C PF16199.5 gi|212224884|ref|YP_002308120.1| - 1.5e-25 89.0 0.1 3.4e-25 87.9 0.1 1.6 1 0 0 1 1 1 1 Radical_SAM C-terminal domain Acetyltransf_1 PF00583.25 gi|212224884|ref|YP_002308120.1| - 4.1e-09 36.7 0.3 1.2e-08 35.1 0.3 1.9 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|212224884|ref|YP_002308120.1| - 4.3e-05 23.5 0.1 9.8e-05 22.3 0.1 1.6 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|212224884|ref|YP_002308120.1| - 0.0087 16.5 0.1 0.019 15.4 0.1 1.6 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain CxxCxxCC PF03692.15 gi|212224887|ref|YP_002308123.1| - 5.2e-15 55.9 0.2 8.4e-15 55.2 0.2 1.4 1 0 0 1 1 1 1 Putative zinc- or iron-chelating domain SapC PF07277.11 gi|212224887|ref|YP_002308123.1| - 0.23 11.0 0.0 0.34 10.5 0.0 1.2 1 0 0 1 1 1 0 SapC UPF0113 PF03657.13 gi|212224888|ref|YP_002308124.1| - 3.3e-15 56.1 0.1 5.4e-15 55.4 0.1 1.4 1 0 0 1 1 1 1 UPF0113 PUA domain UPF0113_N PF17833.1 gi|212224888|ref|YP_002308124.1| - 8.8e-06 26.2 0.1 1.8e-05 25.2 0.0 1.6 2 0 0 2 2 2 1 UPF0113 Pre-PUA domain TruB-C_2 PF09157.11 gi|212224888|ref|YP_002308124.1| - 0.017 15.2 0.0 0.038 14.0 0.0 1.6 1 0 0 1 1 1 0 Pseudouridine synthase II TruB, C-terminal PRA1 PF03208.19 gi|212224890|ref|YP_002308126.1| - 5.2 6.7 9.1 6.3 6.4 4.1 2.5 1 1 1 2 2 2 0 PRA1 family protein ATPase PF06745.13 gi|212224891|ref|YP_002308127.1| - 1.9e-91 305.6 0.0 2.1e-91 305.4 0.0 1.0 1 0 0 1 1 1 1 KaiC GvpD PF07088.11 gi|212224891|ref|YP_002308127.1| - 1.5e-08 33.7 0.0 2e-08 33.3 0.0 1.1 1 0 0 1 1 1 1 GvpD gas vesicle protein AAA_25 PF13481.6 gi|212224891|ref|YP_002308127.1| - 4.4e-07 29.7 0.0 8.8e-07 28.7 0.0 1.5 1 1 0 1 1 1 1 AAA domain Rad51 PF08423.11 gi|212224891|ref|YP_002308127.1| - 0.002 17.4 0.1 0.0072 15.6 0.0 1.8 2 0 0 2 2 2 1 Rad51 DnaB_C PF03796.15 gi|212224891|ref|YP_002308127.1| - 0.015 14.7 0.0 0.02 14.2 0.0 1.2 1 0 0 1 1 1 0 DnaB-like helicase C terminal domain MEDS PF14417.6 gi|212224891|ref|YP_002308127.1| - 0.015 15.1 0.0 0.023 14.5 0.0 1.3 1 0 0 1 1 1 0 MEDS: MEthanogen/methylotroph, DcmR Sensory domain AAA_24 PF13479.6 gi|212224891|ref|YP_002308127.1| - 0.037 13.7 0.2 0.26 11.0 0.4 2.1 2 1 0 2 2 2 0 AAA domain PPV_E1_C PF00519.17 gi|212224891|ref|YP_002308127.1| - 0.071 11.9 0.0 0.12 11.1 0.0 1.3 1 0 0 1 1 1 0 Papillomavirus helicase T2SSE PF00437.20 gi|212224891|ref|YP_002308127.1| - 0.094 11.8 0.0 0.15 11.1 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_16 PF13191.6 gi|212224891|ref|YP_002308127.1| - 0.13 12.7 0.1 0.22 11.9 0.1 1.5 1 1 0 1 1 1 0 AAA ATPase domain HTH_38 PF13936.6 gi|212224892|ref|YP_002308128.1| - 8.4e-06 25.4 0.7 2.6e-05 23.9 0.1 2.1 2 0 0 2 2 1 1 Helix-turn-helix domain HTH_23 PF13384.6 gi|212224892|ref|YP_002308128.1| - 1.9e-05 24.3 0.3 8.2e-05 22.3 0.1 2.1 2 0 0 2 2 2 1 Homeodomain-like domain KASH_CCD PF14662.6 gi|212224892|ref|YP_002308128.1| - 7.8e-05 22.6 14.6 0.00011 22.1 14.6 1.3 1 0 0 1 1 1 1 Coiled-coil region of CCDC155 or KASH Sigma70_r4_2 PF08281.12 gi|212224892|ref|YP_002308128.1| - 0.00012 21.7 0.7 0.00031 20.4 0.0 2.0 2 0 0 2 2 1 1 Sigma-70, region 4 HTH_24 PF13412.6 gi|212224892|ref|YP_002308128.1| - 0.00019 21.0 0.0 0.0004 19.9 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Leu_zip PF15294.6 gi|212224892|ref|YP_002308128.1| - 0.00052 19.6 10.8 0.00071 19.2 10.8 1.3 1 0 0 1 1 1 1 Leucine zipper HTH_20 PF12840.7 gi|212224892|ref|YP_002308128.1| - 0.00055 19.9 0.7 0.0026 17.8 0.0 2.4 2 2 0 2 2 2 1 Helix-turn-helix domain GerE PF00196.19 gi|212224892|ref|YP_002308128.1| - 0.00069 19.1 0.0 0.0015 18.0 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family HTH_11 PF08279.12 gi|212224892|ref|YP_002308128.1| - 0.00087 19.2 0.4 0.0026 17.7 0.0 2.0 2 0 0 2 2 1 1 HTH domain HTH_IclR PF09339.10 gi|212224892|ref|YP_002308128.1| - 0.0011 18.7 0.1 0.0027 17.5 0.1 1.7 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_5 PF01022.20 gi|212224892|ref|YP_002308128.1| - 0.0013 18.5 0.0 0.0084 16.0 0.0 2.4 2 1 1 3 3 2 1 Bacterial regulatory protein, arsR family DUF3450 PF11932.8 gi|212224892|ref|YP_002308128.1| - 0.0021 17.4 8.0 0.0025 17.2 6.9 1.6 1 1 0 1 1 1 1 Protein of unknown function (DUF3450) HTH_40 PF14493.6 gi|212224892|ref|YP_002308128.1| - 0.0027 18.1 9.1 0.019 15.4 9.1 2.3 1 1 0 1 1 1 1 Helix-turn-helix domain RepL PF05732.11 gi|212224892|ref|YP_002308128.1| - 0.0028 17.1 2.2 0.0028 17.1 1.0 1.6 1 1 0 1 1 1 1 Firmicute plasmid replication protein (RepL) HTH_29 PF13551.6 gi|212224892|ref|YP_002308128.1| - 0.003 17.6 0.0 0.0062 16.5 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn helix Sigma70_r4 PF04545.16 gi|212224892|ref|YP_002308128.1| - 0.0041 16.6 0.1 0.011 15.3 0.1 1.7 1 0 0 1 1 1 1 Sigma-70, region 4 NPV_P10 PF05531.12 gi|212224892|ref|YP_002308128.1| - 0.0042 17.5 2.5 0.011 16.2 0.6 2.5 2 1 1 3 3 2 1 Nucleopolyhedrovirus P10 protein HTH_31 PF13560.6 gi|212224892|ref|YP_002308128.1| - 0.0064 16.8 1.8 0.0082 16.5 0.3 2.0 2 1 0 2 2 1 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|212224892|ref|YP_002308128.1| - 0.0072 16.2 0.6 0.015 15.2 0.2 1.8 2 1 0 2 2 1 1 MarR family DUF1664 PF07889.12 gi|212224892|ref|YP_002308128.1| - 0.0076 16.3 8.0 0.0078 16.3 6.2 1.8 1 1 1 2 2 1 1 Protein of unknown function (DUF1664) JIP_LZII PF16471.5 gi|212224892|ref|YP_002308128.1| - 0.011 15.9 19.9 0.14 12.4 4.8 3.4 2 2 2 4 4 3 0 JNK-interacting protein leucine zipper II AAA_23 PF13476.6 gi|212224892|ref|YP_002308128.1| - 0.013 16.0 12.3 0.017 15.6 12.3 1.1 1 0 0 1 1 1 0 AAA domain FlaC_arch PF05377.11 gi|212224892|ref|YP_002308128.1| - 0.014 15.7 12.9 0.086 13.2 5.7 3.7 3 2 0 3 3 2 0 Flagella accessory protein C (FlaC) HTH_28 PF13518.6 gi|212224892|ref|YP_002308128.1| - 0.018 15.2 0.1 0.043 14.0 0.1 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain DUF4527 PF15030.6 gi|212224892|ref|YP_002308128.1| - 0.019 14.4 5.3 0.032 13.7 5.3 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF4527) GreA_GreB_N PF03449.15 gi|212224892|ref|YP_002308128.1| - 0.021 14.9 4.7 0.021 14.9 4.7 3.8 2 1 0 3 3 3 0 Transcription elongation factor, N-terminal Baculo_PEP_C PF04513.12 gi|212224892|ref|YP_002308128.1| - 0.023 14.8 0.4 0.051 13.6 0.3 1.7 1 1 1 2 2 1 0 Baculovirus polyhedron envelope protein, PEP, C terminus YabA PF06156.13 gi|212224892|ref|YP_002308128.1| - 0.028 15.0 7.1 0.028 15.0 7.1 2.1 1 1 1 2 2 2 0 Initiation control protein YabA KorB PF08535.10 gi|212224892|ref|YP_002308128.1| - 0.03 14.4 0.7 0.21 11.6 0.0 2.2 2 0 0 2 2 2 0 KorB domain ADIP PF11559.8 gi|212224892|ref|YP_002308128.1| - 0.034 14.2 10.6 0.057 13.5 10.5 1.5 1 1 0 1 1 1 0 Afadin- and alpha -actinin-Binding HALZ PF02183.18 gi|212224892|ref|YP_002308128.1| - 0.035 14.3 2.9 0.035 14.3 2.9 3.6 3 1 1 4 4 3 0 Homeobox associated leucine zipper BLOC1_2 PF10046.9 gi|212224892|ref|YP_002308128.1| - 0.036 14.4 11.9 0.16 12.3 7.4 2.9 1 1 2 3 3 3 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 HTH_17 PF12728.7 gi|212224892|ref|YP_002308128.1| - 0.037 14.2 0.1 0.82 9.9 0.1 2.4 1 1 1 2 2 2 0 Helix-turn-helix domain Laminin_II PF06009.12 gi|212224892|ref|YP_002308128.1| - 0.041 13.9 10.2 0.071 13.1 8.0 2.0 1 1 1 2 2 2 0 Laminin Domain II DUF3489 PF11994.8 gi|212224892|ref|YP_002308128.1| - 0.048 13.7 0.4 0.12 12.5 0.4 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3489) HTH_DeoR PF08220.12 gi|212224892|ref|YP_002308128.1| - 0.053 13.3 0.1 0.11 12.2 0.1 1.6 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain UPF0242 PF06785.11 gi|212224892|ref|YP_002308128.1| - 0.053 13.6 12.6 0.066 13.3 12.6 1.3 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0242) N-terminus DUF4200 PF13863.6 gi|212224892|ref|YP_002308128.1| - 0.061 13.7 20.6 0.039 14.4 18.6 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF4200) Atg14 PF10186.9 gi|212224892|ref|YP_002308128.1| - 0.064 12.3 8.7 0.085 11.9 8.7 1.2 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 DUF724 PF05266.14 gi|212224892|ref|YP_002308128.1| - 0.075 12.9 14.0 0.04 13.8 11.9 1.5 1 1 1 2 2 1 0 Protein of unknown function (DUF724) CENP-F_leu_zip PF10473.9 gi|212224892|ref|YP_002308128.1| - 0.09 12.8 20.7 0.64 10.0 20.6 2.3 1 1 0 1 1 1 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Myc-LZ PF02344.15 gi|212224892|ref|YP_002308128.1| - 0.096 12.8 0.8 0.096 12.8 0.8 3.4 3 0 0 3 3 3 0 Myc leucine zipper domain GAS PF13851.6 gi|212224892|ref|YP_002308128.1| - 0.1 11.9 18.7 0.5 9.7 18.7 1.8 1 1 0 1 1 1 0 Growth-arrest specific micro-tubule binding Terminase_5 PF06056.12 gi|212224892|ref|YP_002308128.1| - 0.14 12.1 0.0 0.31 10.9 0.0 1.6 1 0 0 1 1 1 0 Putative ATPase subunit of terminase (gpP-like) TolA_bind_tri PF16331.5 gi|212224892|ref|YP_002308128.1| - 0.16 12.1 3.1 0.23 11.6 2.3 1.8 1 1 0 1 1 1 0 TolA binding protein trimerisation ERM PF00769.19 gi|212224892|ref|YP_002308128.1| - 0.17 11.6 19.1 0.2 11.4 18.8 1.4 1 1 0 1 1 1 0 Ezrin/radixin/moesin family Rho_Binding PF08912.11 gi|212224892|ref|YP_002308128.1| - 0.17 12.7 16.8 1.3 9.8 4.1 2.8 1 1 1 2 2 2 0 Rho Binding Syntaxin_2 PF14523.6 gi|212224892|ref|YP_002308128.1| - 0.2 12.0 6.1 1.5 9.3 0.9 2.4 1 1 1 2 2 2 0 Syntaxin-like protein Spc7 PF08317.11 gi|212224892|ref|YP_002308128.1| - 0.21 10.5 17.7 0.28 10.0 17.7 1.3 1 1 0 1 1 1 0 Spc7 kinetochore protein PilJ PF13675.6 gi|212224892|ref|YP_002308128.1| - 0.21 11.6 2.2 2.4 8.2 0.5 2.6 1 1 1 2 2 2 0 Type IV pili methyl-accepting chemotaxis transducer N-term UPF0449 PF15136.6 gi|212224892|ref|YP_002308128.1| - 0.21 12.1 12.6 0.12 12.8 4.4 2.4 1 1 1 2 2 2 0 Uncharacterised protein family UPF0449 TMF_DNA_bd PF12329.8 gi|212224892|ref|YP_002308128.1| - 0.24 11.4 25.2 1.8 8.6 12.0 2.4 2 0 0 2 2 2 0 TATA element modulatory factor 1 DNA binding Herpes_UL6 PF01763.16 gi|212224892|ref|YP_002308128.1| - 0.25 9.8 4.0 0.3 9.6 4.0 1.1 1 0 0 1 1 1 0 Herpesvirus UL6 like BRE1 PF08647.11 gi|212224892|ref|YP_002308128.1| - 0.3 11.2 14.9 0.15 12.1 12.8 1.6 2 0 0 2 2 1 0 BRE1 E3 ubiquitin ligase RP-C PF03428.13 gi|212224892|ref|YP_002308128.1| - 0.33 10.6 5.1 6.7 6.3 0.7 2.6 2 1 0 2 2 2 0 Replication protein C N-terminal domain Nsp1_C PF05064.13 gi|212224892|ref|YP_002308128.1| - 0.46 10.3 6.6 0.61 9.9 4.7 2.1 1 1 1 2 2 1 0 Nsp1-like C-terminal region Syntaxin-6_N PF09177.11 gi|212224892|ref|YP_002308128.1| - 0.54 10.9 9.4 2.9 8.5 9.4 2.4 1 1 0 1 1 1 0 Syntaxin 6, N-terminal Nup54 PF13874.6 gi|212224892|ref|YP_002308128.1| - 0.54 10.4 8.0 0.94 9.6 6.5 1.9 1 1 1 2 2 2 0 Nucleoporin complex subunit 54 AAA_13 PF13166.6 gi|212224892|ref|YP_002308128.1| - 0.55 8.8 10.2 0.52 8.9 9.2 1.4 1 1 0 1 1 1 0 AAA domain DUF4407 PF14362.6 gi|212224892|ref|YP_002308128.1| - 0.55 9.5 9.2 0.44 9.8 6.9 1.6 1 1 1 2 2 2 0 Domain of unknown function (DUF4407) KfrA_N PF11740.8 gi|212224892|ref|YP_002308128.1| - 0.78 10.4 14.0 0.41 11.4 8.1 2.2 1 1 1 2 2 2 0 Plasmid replication region DNA-binding N-term BLI1 PF17324.2 gi|212224892|ref|YP_002308128.1| - 0.82 10.3 14.1 1.6 9.4 10.9 2.4 1 1 1 2 2 2 0 BLOC-1 interactor 1 Occludin_ELL PF07303.13 gi|212224892|ref|YP_002308128.1| - 0.97 10.2 9.2 0.62 10.8 7.0 1.7 2 0 0 2 2 1 0 Occludin homology domain Fib_alpha PF08702.10 gi|212224892|ref|YP_002308128.1| - 1 9.5 7.2 0.48 10.6 4.3 1.8 2 0 0 2 2 2 0 Fibrinogen alpha/beta chain family CREPT PF16566.5 gi|212224892|ref|YP_002308128.1| - 1.1 9.4 10.4 1.4 9.1 9.4 1.6 1 1 0 1 1 1 0 Cell-cycle alteration and expression-elevated protein in tumour TMPIT PF07851.13 gi|212224892|ref|YP_002308128.1| - 1.1 8.4 7.0 1.8 7.7 7.0 1.3 1 0 0 1 1 1 0 TMPIT-like protein kleA_kleC PF17383.2 gi|212224892|ref|YP_002308128.1| - 1.1 9.6 10.7 2.3 8.6 3.8 3.0 1 1 1 3 3 3 0 Uncharacterized KorC regulated protein A PspA_IM30 PF04012.12 gi|212224892|ref|YP_002308128.1| - 1.2 8.7 19.4 3.6 7.1 19.3 1.9 1 1 0 1 1 1 0 PspA/IM30 family DUF4795 PF16043.5 gi|212224892|ref|YP_002308128.1| - 1.7 8.2 11.5 9.4 5.8 11.5 2.0 1 1 0 1 1 1 0 Domain of unknown function (DUF4795) MCU PF04678.13 gi|212224892|ref|YP_002308128.1| - 1.9 8.6 6.3 2.5 8.1 5.6 1.5 1 1 0 1 1 1 0 Mitochondrial calcium uniporter HAUS-augmin3 PF14932.6 gi|212224892|ref|YP_002308128.1| - 2.1 7.9 15.1 2.4 7.6 14.3 1.5 1 1 1 2 2 2 0 HAUS augmin-like complex subunit 3 Cnn_1N PF07989.11 gi|212224892|ref|YP_002308128.1| - 2.1 8.5 16.0 1.9 8.7 4.2 2.6 1 1 0 2 2 2 0 Centrosomin N-terminal motif 1 PI3K_P85_iSH2 PF16454.5 gi|212224892|ref|YP_002308128.1| - 2.2 7.8 14.2 63 3.1 14.1 2.4 2 1 0 2 2 1 0 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain V_ATPase_I PF01496.19 gi|212224892|ref|YP_002308128.1| - 2.7 5.8 4.8 2.9 5.7 4.8 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family DUF948 PF06103.11 gi|212224892|ref|YP_002308128.1| - 2.8 8.3 8.1 3.3 8.0 2.2 2.7 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF948) bZIP_1 PF00170.21 gi|212224892|ref|YP_002308128.1| - 2.8 8.1 22.3 0.23 11.6 8.2 3.4 2 2 1 3 3 3 0 bZIP transcription factor NYD-SP28_assoc PF14775.6 gi|212224892|ref|YP_002308128.1| - 3 8.0 10.4 2.6 8.2 0.6 2.9 1 1 2 3 3 3 0 Sperm tail C-terminal domain DUF5082 PF16888.5 gi|212224892|ref|YP_002308128.1| - 3.1 8.1 9.6 90 3.4 9.6 2.6 1 1 0 1 1 1 0 Domain of unknown function (DUF5082) Nmad5 PF18757.1 gi|212224892|ref|YP_002308128.1| - 3.2 7.9 11.2 5.7 7.1 10.3 1.9 1 1 1 2 2 1 0 Nucleotide modification associated domain 5 TPR_MLP1_2 PF07926.12 gi|212224892|ref|YP_002308128.1| - 3.5 7.7 18.1 13 5.9 18.0 2.1 1 1 0 1 1 1 0 TPR/MLP1/MLP2-like protein PRKG1_interact PF15898.5 gi|212224892|ref|YP_002308128.1| - 3.8 8.5 16.5 0.94 10.4 2.7 2.6 2 1 1 3 3 2 0 cGMP-dependent protein kinase interacting domain ZapB PF06005.12 gi|212224892|ref|YP_002308128.1| - 3.8 8.0 23.0 13 6.3 7.3 2.7 1 1 2 3 3 3 0 Cell division protein ZapB Fungal_TACC PF12709.7 gi|212224892|ref|YP_002308128.1| - 6.7 7.2 18.6 8.5 6.9 5.7 3.4 1 1 2 3 3 3 0 Fungal Transforming acidic coiled-coil (TACC) proteins Uds1 PF15456.6 gi|212224892|ref|YP_002308128.1| - 6.8 6.9 15.0 6.9 6.9 12.1 2.4 1 1 1 2 2 2 0 Up-regulated During Septation DivIVA PF05103.13 gi|212224892|ref|YP_002308128.1| - 6.9 6.8 16.7 0.3 11.2 4.2 2.8 2 1 1 3 3 3 0 DivIVA protein Swi5 PF07061.11 gi|212224892|ref|YP_002308128.1| - 8 6.6 15.9 0.86 9.7 2.9 3.3 2 2 2 4 4 4 0 Swi5 Nup88 PF10168.9 gi|212224892|ref|YP_002308128.1| - 8.3 4.1 13.1 9.9 3.8 13.1 1.1 1 0 0 1 1 1 0 Nuclear pore component AdoMet_dc PF02675.15 gi|212224893|ref|YP_002308129.1| - 1.5e-37 128.0 0.0 1.9e-37 127.7 0.0 1.1 1 0 0 1 1 1 1 S-adenosylmethionine decarboxylase SecD_SecF PF02355.16 gi|212224894|ref|YP_002308130.1| - 1.1e-29 103.2 13.6 1.8e-29 102.5 13.6 1.3 1 0 0 1 1 1 1 Protein export membrane protein Patched PF02460.18 gi|212224894|ref|YP_002308130.1| - 7.1e-05 21.1 11.4 7.1e-05 21.1 11.4 1.4 2 0 0 2 2 2 1 Patched family ACR_tran PF00873.19 gi|212224894|ref|YP_002308130.1| - 0.0057 14.4 7.7 0.0075 14.0 7.7 1.2 1 0 0 1 1 1 1 AcrB/AcrD/AcrF family Sec_GG PF07549.14 gi|212224894|ref|YP_002308130.1| - 0.012 15.0 0.1 0.033 13.7 0.1 1.7 1 0 0 1 1 1 0 SecD/SecF GG Motif MMPL PF03176.15 gi|212224894|ref|YP_002308130.1| - 0.17 10.8 21.5 0.0092 14.9 16.1 1.5 2 0 0 2 2 2 0 MMPL family SecD_SecF PF02355.16 gi|212224895|ref|YP_002308131.1| - 3.1e-18 65.8 6.7 3.1e-18 65.8 6.7 1.6 2 0 0 2 2 2 1 Protein export membrane protein MMPL PF03176.15 gi|212224895|ref|YP_002308131.1| - 2.4e-05 23.5 10.0 2.4e-05 23.5 10.0 1.7 2 0 0 2 2 2 1 MMPL family Sec_GG PF07549.14 gi|212224895|ref|YP_002308131.1| - 0.00012 21.5 0.0 0.00025 20.4 0.0 1.6 1 0 0 1 1 1 1 SecD/SecF GG Motif Sarcolipin PF05366.11 gi|212224895|ref|YP_002308131.1| - 0.016 14.9 0.5 0.016 14.9 0.5 2.3 2 0 0 2 2 2 0 Sarcolipin SecD-TM1 PF13721.6 gi|212224895|ref|YP_002308131.1| - 0.068 13.6 0.4 1 9.8 0.2 2.6 2 0 0 2 2 2 0 SecD export protein N-terminal TM region Patched PF02460.18 gi|212224895|ref|YP_002308131.1| - 0.072 11.2 7.5 0.12 10.4 7.5 1.2 1 0 0 1 1 1 0 Patched family RimM PF01782.18 gi|212224895|ref|YP_002308131.1| - 0.083 13.1 0.1 0.17 12.1 0.1 1.5 1 0 0 1 1 1 0 RimM N-terminal domain ACR_tran PF00873.19 gi|212224895|ref|YP_002308131.1| - 9.1 3.8 15.4 0.61 7.7 8.9 1.9 2 0 0 2 2 2 0 AcrB/AcrD/AcrF family TrkA_N PF02254.18 gi|212224896|ref|YP_002308132.1| - 1e-29 103.1 0.1 5e-29 100.9 0.1 1.9 2 0 0 2 2 2 1 TrkA-N domain TrkA_C PF02080.21 gi|212224896|ref|YP_002308132.1| - 6.1e-15 54.8 0.2 1.6e-14 53.5 0.2 1.7 1 0 0 1 1 1 1 TrkA-C domain ApbA PF02558.16 gi|212224896|ref|YP_002308132.1| - 6.9e-06 25.8 0.0 1.1e-05 25.1 0.0 1.4 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA NAD_binding_10 PF13460.6 gi|212224896|ref|YP_002308132.1| - 2.7e-05 24.1 0.1 4.6e-05 23.4 0.1 1.4 1 0 0 1 1 1 1 NAD(P)H-binding Sacchrp_dh_NADP PF03435.18 gi|212224896|ref|YP_002308132.1| - 4.5e-05 23.7 0.1 0.00013 22.3 0.1 1.7 2 0 0 2 2 2 1 Saccharopine dehydrogenase NADP binding domain NmrA PF05368.13 gi|212224896|ref|YP_002308132.1| - 7.9e-05 22.3 0.1 0.00014 21.6 0.1 1.4 1 0 0 1 1 1 1 NmrA-like family Shikimate_DH PF01488.20 gi|212224896|ref|YP_002308132.1| - 0.00023 21.3 0.2 0.00041 20.4 0.2 1.6 1 1 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase UDPG_MGDP_dh_N PF03721.14 gi|212224896|ref|YP_002308132.1| - 0.00023 20.8 0.3 0.0005 19.7 0.1 1.7 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AlaDh_PNT_C PF01262.21 gi|212224896|ref|YP_002308132.1| - 0.00056 19.3 0.1 0.00085 18.7 0.1 1.2 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain Pyr_redox PF00070.27 gi|212224896|ref|YP_002308132.1| - 0.0006 20.3 0.1 0.0016 19.0 0.1 1.7 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_7 PF13241.6 gi|212224896|ref|YP_002308132.1| - 0.00081 19.8 0.0 0.0018 18.7 0.0 1.6 1 0 0 1 1 1 1 Putative NAD(P)-binding XdhC_C PF13478.6 gi|212224896|ref|YP_002308132.1| - 0.0024 18.4 0.0 0.0039 17.7 0.0 1.3 1 0 0 1 1 1 1 XdhC Rossmann domain F420_oxidored PF03807.17 gi|212224896|ref|YP_002308132.1| - 0.0028 18.2 0.1 0.0075 16.8 0.1 1.8 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent 3HCDH_N PF02737.18 gi|212224896|ref|YP_002308132.1| - 0.0037 17.2 0.2 0.0082 16.0 0.2 1.6 1 1 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_Gly3P_dh_N PF01210.23 gi|212224896|ref|YP_002308132.1| - 0.0039 17.2 0.0 0.0069 16.4 0.0 1.5 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus FAD_binding_3 PF01494.19 gi|212224896|ref|YP_002308132.1| - 0.0046 16.3 0.1 0.0068 15.7 0.1 1.2 1 0 0 1 1 1 1 FAD binding domain Epimerase PF01370.21 gi|212224896|ref|YP_002308132.1| - 0.009 15.5 0.1 0.019 14.5 0.1 1.5 1 1 1 2 2 2 1 NAD dependent epimerase/dehydratase family Thi4 PF01946.17 gi|212224896|ref|YP_002308132.1| - 0.012 14.8 0.1 0.022 14.0 0.1 1.4 1 0 0 1 1 1 0 Thi4 family Pyr_redox_2 PF07992.14 gi|212224896|ref|YP_002308132.1| - 0.015 14.5 0.1 0.017 14.4 0.1 1.3 1 1 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 gi|212224896|ref|YP_002308132.1| - 0.038 13.6 0.0 0.064 12.8 0.0 1.5 2 0 0 2 2 2 0 FAD dependent oxidoreductase AdoHcyase_NAD PF00670.21 gi|212224896|ref|YP_002308132.1| - 0.041 14.0 0.1 0.08 13.0 0.1 1.7 1 1 0 1 1 1 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 2-Hacid_dh_C PF02826.19 gi|212224896|ref|YP_002308132.1| - 0.05 13.0 0.1 0.079 12.3 0.1 1.3 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain adh_short_C2 PF13561.6 gi|212224896|ref|YP_002308132.1| - 0.053 13.1 0.1 0.099 12.2 0.1 1.4 1 0 0 1 1 1 0 Enoyl-(Acyl carrier protein) reductase Trp_halogenase PF04820.14 gi|212224896|ref|YP_002308132.1| - 0.057 12.3 0.0 0.081 11.7 0.0 1.2 1 0 0 1 1 1 0 Tryptophan halogenase NAD_binding_8 PF13450.6 gi|212224896|ref|YP_002308132.1| - 0.06 13.6 0.0 0.15 12.3 0.0 1.6 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain PglD_N PF17836.1 gi|212224896|ref|YP_002308132.1| - 0.085 13.5 1.4 0.46 11.2 0.1 2.6 2 1 0 3 3 3 0 PglD N-terminal domain HI0933_like PF03486.14 gi|212224896|ref|YP_002308132.1| - 0.09 11.5 0.1 0.14 10.8 0.1 1.3 1 0 0 1 1 1 0 HI0933-like protein Rossmann-like PF10727.9 gi|212224896|ref|YP_002308132.1| - 0.092 12.6 0.0 0.17 11.7 0.0 1.5 1 0 0 1 1 1 0 Rossmann-like domain DUF104 PF01954.16 gi|212224896|ref|YP_002308132.1| - 9.9 6.7 10.5 1.2 9.6 0.3 3.4 3 1 1 4 4 4 0 Protein of unknown function DUF104 V-ATPase_G_2 PF16999.5 gi|212224897|ref|YP_002308133.1| - 4.8e-05 23.7 21.3 8.4e-05 22.9 21.3 1.4 1 1 0 1 1 1 1 Vacuolar (H+)-ATPase G subunit V-ATPase_G PF03179.15 gi|212224897|ref|YP_002308133.1| - 0.008 16.7 21.8 0.13 12.8 7.5 2.0 1 1 1 2 2 2 2 Vacuolar (H+)-ATPase G subunit ATP-synt_B PF00430.18 gi|212224897|ref|YP_002308133.1| - 0.014 15.5 20.5 0.071 13.2 18.1 1.9 1 1 0 1 1 1 0 ATP synthase B/B' CF(0) DUF3552 PF12072.8 gi|212224897|ref|YP_002308133.1| - 0.057 12.8 19.4 0.46 9.9 8.7 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF3552) DivIVA PF05103.13 gi|212224897|ref|YP_002308133.1| - 0.18 11.9 15.0 4.5 7.4 15.0 2.2 1 1 0 1 1 1 0 DivIVA protein Phlebovirus_NSM PF07246.11 gi|212224897|ref|YP_002308133.1| - 1.8 7.9 6.9 2 7.7 6.9 1.1 1 0 0 1 1 1 0 Phlebovirus nonstructural protein NS-M DUF883 PF05957.13 gi|212224897|ref|YP_002308133.1| - 2.1 9.0 9.2 6 7.5 1.2 2.1 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF883) YtxH PF12732.7 gi|212224897|ref|YP_002308133.1| - 4.9 7.8 12.1 1.2e+02 3.4 12.1 2.1 1 1 0 1 1 1 0 YtxH-like protein VGCC_beta4Aa_N PF12052.8 gi|212224897|ref|YP_002308133.1| - 5.4 7.2 11.2 1.1 9.4 0.8 2.8 3 1 0 3 3 3 0 Voltage gated calcium channel subunit beta domain 4Aa N terminal V_ATPase_I PF01496.19 gi|212224898|ref|YP_002308134.1| - 1.3e-38 132.6 4.5 8.8e-26 90.1 0.1 2.3 2 0 0 2 2 2 2 V-type ATPase 116kDa subunit family NPV_P10 PF05531.12 gi|212224898|ref|YP_002308134.1| - 0.18 12.3 0.1 0.46 11.0 0.1 1.7 1 0 0 1 1 1 0 Nucleopolyhedrovirus P10 protein ATP-synt_C PF00137.21 gi|212224899|ref|YP_002308135.1| - 2.2e-28 98.4 28.5 1.8e-15 57.0 10.6 2.2 2 0 0 2 2 2 2 ATP synthase subunit C Neuralized PF07177.12 gi|212224899|ref|YP_002308135.1| - 0.099 12.6 0.0 7.5 6.5 0.0 2.1 2 0 0 2 2 2 0 Neuralized vATP-synt_E PF01991.18 gi|212224900|ref|YP_002308136.1| - 4.5e-38 130.7 12.8 5.1e-38 130.5 12.8 1.0 1 0 0 1 1 1 1 ATP synthase (E/31 kDa) subunit DUF1884 PF08967.10 gi|212224900|ref|YP_002308136.1| - 0.011 15.9 0.3 0.034 14.4 0.3 1.9 1 0 0 1 1 1 0 Domain of unknown function (DUF1884) DUF3552 PF12072.8 gi|212224900|ref|YP_002308136.1| - 0.026 14.0 22.5 0.7 9.3 12.1 2.5 1 1 1 2 2 2 0 Domain of unknown function (DUF3552) ATP-synt_B PF00430.18 gi|212224900|ref|YP_002308136.1| - 0.091 12.8 24.7 0.62 10.2 22.6 2.3 1 1 1 2 2 2 0 ATP synthase B/B' CF(0) MMR_HSR1_C PF08438.10 gi|212224900|ref|YP_002308136.1| - 0.19 12.3 2.0 0.37 11.4 2.0 1.5 1 0 0 1 1 1 0 GTPase of unknown function C-terminal Glyco_trans_1_2 PF13524.6 gi|212224900|ref|YP_002308136.1| - 0.23 11.9 7.1 0.12 12.8 3.4 2.4 3 1 0 3 3 3 0 Glycosyl transferases group 1 HrpE PF06188.12 gi|212224900|ref|YP_002308136.1| - 0.53 10.1 10.1 0.8 9.5 10.1 1.2 1 0 0 1 1 1 0 HrpE/YscL/FliH and V-type ATPase subunit E Borrelia_P83 PF05262.11 gi|212224900|ref|YP_002308136.1| - 1.1 7.7 11.0 1.4 7.3 11.0 1.1 1 0 0 1 1 1 0 Borrelia P83/100 protein Atg14 PF10186.9 gi|212224900|ref|YP_002308136.1| - 1.1 8.3 6.6 1.4 8.0 6.6 1.2 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 Prefoldin PF02996.17 gi|212224900|ref|YP_002308136.1| - 2.5 8.0 11.1 0.092 12.7 1.4 2.4 1 1 1 2 2 2 0 Prefoldin subunit DivIVA PF05103.13 gi|212224900|ref|YP_002308136.1| - 5.1 7.2 20.4 9.4 6.3 17.1 2.5 2 1 0 2 2 2 0 DivIVA protein CinA_KH PF18146.1 gi|212224900|ref|YP_002308136.1| - 9.6 6.5 11.4 21 5.4 1.2 4.1 3 1 1 4 4 4 0 Damage-inducible protein CinA KH domain vATP-synt_AC39 PF01992.16 gi|212224901|ref|YP_002308137.1| - 6.3e-66 223.2 10.7 7.1e-66 223.0 10.7 1.0 1 0 0 1 1 1 1 ATP synthase (C/AC39) subunit ATP-synt_F PF01990.17 gi|212224902|ref|YP_002308138.1| - 8.3e-18 64.5 0.2 1.8e-17 63.4 0.2 1.5 1 1 0 1 1 1 1 ATP synthase (F/14-kDa) subunit ATP-synt_ab PF00006.25 gi|212224903|ref|YP_002308139.1| - 1.3e-92 309.2 0.0 2.5e-92 308.3 0.0 1.5 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_Xtn PF16886.5 gi|212224903|ref|YP_002308139.1| - 3.7e-48 162.4 0.2 6.7e-48 161.5 0.2 1.4 1 0 0 1 1 1 1 ATPsynthase alpha/beta subunit N-term extension ATP-synt_ab_N PF02874.23 gi|212224903|ref|YP_002308139.1| - 4.6e-16 59.1 3.7 1.9e-15 57.1 3.7 2.2 1 0 0 1 1 1 1 ATP synthase alpha/beta family, beta-barrel domain AAA_22 PF13401.6 gi|212224903|ref|YP_002308139.1| - 0.037 14.3 0.0 0.082 13.2 0.0 1.5 1 0 0 1 1 1 0 AAA domain DUF4315 PF14193.6 gi|212224903|ref|YP_002308139.1| - 0.35 10.9 2.5 28 4.8 0.1 3.1 3 0 0 3 3 3 0 Domain of unknown function (DUF4315) ATP-synt_ab PF00006.25 gi|212224904|ref|YP_002308140.1| - 3e-68 229.7 0.0 4e-68 229.3 0.0 1.2 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_N PF02874.23 gi|212224904|ref|YP_002308140.1| - 1.7e-13 50.9 2.2 4.8e-13 49.4 2.2 1.8 1 0 0 1 1 1 1 ATP synthase alpha/beta family, beta-barrel domain HAS-barrel PF09378.10 gi|212224904|ref|YP_002308140.1| - 1.4e-05 25.1 1.0 4.9e-05 23.4 1.0 1.9 1 0 0 1 1 1 1 HAS barrel domain ATP-synt_D PF01813.17 gi|212224905|ref|YP_002308141.1| - 1.3e-62 211.2 13.4 1.4e-62 211.0 13.4 1.0 1 0 0 1 1 1 1 ATP synthase subunit D Noelin-1 PF12308.8 gi|212224905|ref|YP_002308141.1| - 0.95 9.5 3.3 1.8 8.6 0.4 2.2 2 0 0 2 2 2 0 Neurogenesis glycoprotein Lactamase_B PF00753.27 gi|212224906|ref|YP_002308142.1| - 1.8e-18 67.3 1.7 2.4e-18 66.9 1.7 1.2 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.6 gi|212224906|ref|YP_002308142.1| - 0.015 15.2 0.0 0.02 14.8 0.0 1.3 1 1 0 1 1 1 0 Beta-lactamase superfamily domain MCPsignal PF00015.21 gi|212224907|ref|YP_002308143.1| - 1.6e-29 102.9 8.4 1.6e-29 102.9 8.4 2.3 1 1 0 2 2 2 1 Methyl-accepting chemotaxis protein (MCP) signalling domain T7SS_ESX_EspC PF10824.8 gi|212224907|ref|YP_002308143.1| - 0.033 14.7 1.3 24 5.5 0.0 3.8 3 3 3 6 6 6 0 Excreted virulence factor EspC, type VII ESX diderm DASH_Dam1 PF08653.10 gi|212224907|ref|YP_002308143.1| - 0.056 13.3 7.6 2.5 7.9 0.0 4.7 3 2 2 5 5 5 0 DASH complex subunit Dam1 TetR PF13972.6 gi|212224907|ref|YP_002308143.1| - 0.11 12.2 1.1 1.4 8.6 0.1 2.8 1 1 1 3 3 3 0 Bacterial transcriptional repressor FIST_C PF10442.9 gi|212224907|ref|YP_002308143.1| - 0.15 12.1 0.4 0.41 10.6 0.3 1.7 1 1 0 1 1 1 0 FIST C domain DASH_Dad4 PF08650.10 gi|212224907|ref|YP_002308143.1| - 0.15 12.0 5.8 0.83 9.7 0.3 3.6 2 2 0 2 2 2 0 DASH complex subunit Dad4 Mce4_CUP1 PF11887.8 gi|212224907|ref|YP_002308143.1| - 0.15 11.4 0.3 16 4.8 0.1 2.6 1 1 2 3 3 3 0 Cholesterol uptake porter CUP1 of Mce4, putative COMM_domain PF07258.14 gi|212224907|ref|YP_002308143.1| - 0.23 11.6 2.3 1.7 8.8 0.8 3.2 2 1 0 2 2 2 0 COMM domain MCC-bdg_PDZ PF10506.9 gi|212224907|ref|YP_002308143.1| - 0.24 11.4 4.4 0.43 10.6 0.1 3.0 4 0 0 4 4 3 0 PDZ domain of MCC-2 bdg protein for Usher syndrome WXG100 PF06013.12 gi|212224907|ref|YP_002308143.1| - 0.38 11.0 4.9 10 6.4 0.1 4.2 3 2 1 4 4 4 0 Proteins of 100 residues with WXG Noelin-1 PF12308.8 gi|212224907|ref|YP_002308143.1| - 0.69 9.9 3.3 2.7 8.0 0.2 2.9 2 2 0 2 2 2 0 Neurogenesis glycoprotein BLOC1_2 PF10046.9 gi|212224907|ref|YP_002308143.1| - 1.4 9.3 9.5 19 5.7 0.3 4.2 2 2 2 4 4 4 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 DASH_Dad1 PF08649.10 gi|212224907|ref|YP_002308143.1| - 2.7 8.3 11.0 24 5.2 0.4 4.7 3 2 2 5 5 5 0 DASH complex subunit Dad1 Lipoprotein_7 PF01540.16 gi|212224907|ref|YP_002308143.1| - 4.2 6.6 11.0 1.5e+02 1.4 11.0 2.5 1 1 0 1 1 1 0 Adhesin lipoprotein DHHA1 PF02272.19 gi|212224908|ref|YP_002308144.1| - 1.9e-15 57.5 1.2 4e-15 56.4 1.2 1.6 1 0 0 1 1 1 1 DHHA1 domain tRNA_SAD PF07973.14 gi|212224908|ref|YP_002308144.1| - 5.7e-14 51.9 1.1 1.3e-13 50.8 0.5 1.9 2 0 0 2 2 2 1 Threonyl and Alanyl tRNA synthetase second additional domain tRNA-synt_2c PF01411.19 gi|212224908|ref|YP_002308144.1| - 2.6e-11 42.8 0.0 3.9e-11 42.2 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class II (A) CENP-F_leu_zip PF10473.9 gi|212224908|ref|YP_002308144.1| - 0.0078 16.2 0.9 0.014 15.4 0.9 1.3 1 0 0 1 1 1 1 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 SlyX PF04102.12 gi|212224908|ref|YP_002308144.1| - 0.051 14.2 0.0 0.14 12.8 0.0 1.8 1 0 0 1 1 1 0 SlyX HALZ PF02183.18 gi|212224908|ref|YP_002308144.1| - 0.078 13.2 3.1 0.2 11.9 3.1 1.7 1 0 0 1 1 1 0 Homeobox associated leucine zipper RPW8 PF05659.11 gi|212224908|ref|YP_002308144.1| - 0.12 12.1 0.3 0.41 10.3 0.1 1.9 2 0 0 2 2 2 0 Arabidopsis broad-spectrum mildew resistance protein RPW8 ZapB PF06005.12 gi|212224908|ref|YP_002308144.1| - 0.19 12.2 2.8 0.47 10.9 2.8 1.6 1 0 0 1 1 1 0 Cell division protein ZapB HopW1-1 PF15457.6 gi|212224908|ref|YP_002308144.1| - 0.2 10.9 0.2 0.31 10.3 0.2 1.2 1 0 0 1 1 1 0 Type III T3SS secreted effector HopW1-1/HopPmaA YabA PF06156.13 gi|212224908|ref|YP_002308144.1| - 0.22 12.2 0.2 0.72 10.5 0.1 1.8 2 0 0 2 2 2 0 Initiation control protein YabA ATP_bind_3 PF01171.20 gi|212224909|ref|YP_002308145.1| - 1.1e-09 38.2 0.0 1.1e-08 35.0 0.0 2.1 2 0 0 2 2 2 1 PP-loop family QueC PF06508.13 gi|212224909|ref|YP_002308145.1| - 2e-09 37.2 0.0 3.1e-09 36.6 0.0 1.3 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC tRNA_Me_trans PF03054.16 gi|212224909|ref|YP_002308145.1| - 2.1e-07 30.1 0.0 4e-07 29.2 0.0 1.4 1 0 0 1 1 1 1 tRNA methyl transferase NAD_synthase PF02540.17 gi|212224909|ref|YP_002308145.1| - 3.2e-06 26.5 0.0 4.6e-06 25.9 0.0 1.3 1 0 0 1 1 1 1 NAD synthase PAPS_reduct PF01507.19 gi|212224909|ref|YP_002308145.1| - 6.1e-06 26.4 0.0 8.1e-06 26.0 0.0 1.2 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family ThiI PF02568.14 gi|212224909|ref|YP_002308145.1| - 8.5e-05 22.2 0.0 0.00015 21.4 0.0 1.4 1 0 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) Diphthami_syn_2 PF01902.17 gi|212224909|ref|YP_002308145.1| - 0.0025 17.3 0.0 0.0047 16.5 0.0 1.4 1 0 0 1 1 1 1 Diphthamide synthase Asn_synthase PF00733.21 gi|212224909|ref|YP_002308145.1| - 0.019 14.7 0.0 0.022 14.4 0.0 1.3 1 1 0 1 1 1 0 Asparagine synthase Arginosuc_synth PF00764.19 gi|212224909|ref|YP_002308145.1| - 0.019 14.3 0.0 0.024 13.9 0.0 1.1 1 0 0 1 1 1 0 Arginosuccinate synthase YgbA_NO PF11756.8 gi|212224909|ref|YP_002308145.1| - 0.025 14.9 0.1 0.07 13.5 0.1 1.7 1 0 0 1 1 1 0 Nitrous oxide-stimulated promoter zf-RRPl_C4 PF17026.5 gi|212224909|ref|YP_002308145.1| - 0.041 14.0 1.1 1.3 9.2 0.1 2.2 2 0 0 2 2 2 0 Putative ribonucleoprotein zinc-finger pf C4 type QueH PF02677.14 gi|212224909|ref|YP_002308145.1| - 0.12 12.4 0.1 0.21 11.7 0.1 1.3 1 0 0 1 1 1 0 Epoxyqueuosine reductase QueH Radical_SAM PF04055.21 gi|212224912|ref|YP_002308148.1| - 9.8e-14 52.1 11.0 1.3e-13 51.6 3.2 3.2 2 1 1 3 3 3 1 Radical SAM superfamily Fer4_14 PF13394.6 gi|212224912|ref|YP_002308148.1| - 0.00097 19.3 0.5 0.069 13.3 0.5 2.7 1 1 0 1 1 1 1 4Fe-4S single cluster domain Acetyltransf_11 PF13720.6 gi|212224912|ref|YP_002308148.1| - 0.092 13.2 0.1 0.38 11.3 0.1 1.9 1 1 1 2 2 2 0 Udp N-acetylglucosamine O-acyltransferase; Domain 2 DHODB_Fe-S_bind PF10418.9 gi|212224913|ref|YP_002308149.1| - 7.6e-11 41.6 3.7 1.6e-10 40.6 3.7 1.6 1 0 0 1 1 1 1 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B NAD_binding_1 PF00175.21 gi|212224913|ref|YP_002308149.1| - 1.1e-08 35.6 0.0 4.2e-08 33.8 0.0 1.9 1 1 0 1 1 1 1 Oxidoreductase NAD-binding domain FAD_binding_6 PF00970.24 gi|212224913|ref|YP_002308149.1| - 0.0023 18.2 0.0 0.012 16.0 0.0 1.9 1 1 0 1 1 1 1 Oxidoreductase FAD-binding domain NAD_binding_6 PF08030.12 gi|212224913|ref|YP_002308149.1| - 0.022 14.9 0.0 0.11 12.7 0.0 2.0 1 1 1 2 2 2 0 Ferric reductase NAD binding domain Amidohydro_1 PF01979.20 gi|212224914|ref|YP_002308150.1| - 7.2e-24 84.7 0.1 5.4e-13 49.0 0.0 2.3 2 1 0 2 2 2 2 Amidohydrolase family Amidohydro_3 PF07969.11 gi|212224914|ref|YP_002308150.1| - 5.2e-11 42.7 0.0 0.0003 20.4 0.0 3.0 3 0 0 3 3 3 3 Amidohydrolase family DHOase PF12890.7 gi|212224914|ref|YP_002308150.1| - 0.0067 16.4 0.0 0.017 15.0 0.0 1.7 1 1 0 1 1 1 1 Dihydro-orotase-like TatD_DNase PF01026.21 gi|212224914|ref|YP_002308150.1| - 0.023 14.1 0.0 1.3 8.4 0.0 2.2 2 0 0 2 2 2 0 TatD related DNase SBP_bac_5 PF00496.22 gi|212224915|ref|YP_002308151.1| - 4.5e-19 68.7 2.2 4.5e-19 68.7 2.2 2.1 2 1 0 2 2 2 1 Bacterial extracellular solute-binding proteins, family 5 Middle DUF4366 PF14283.6 gi|212224915|ref|YP_002308151.1| - 0.0053 16.8 0.3 0.0092 16.0 0.3 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4366) RIFIN PF02009.16 gi|212224915|ref|YP_002308151.1| - 0.16 11.8 0.2 0.24 11.3 0.2 1.2 1 0 0 1 1 1 0 Rifin LPD30 PF18850.1 gi|212224915|ref|YP_002308151.1| - 0.17 11.7 0.0 6.8 6.5 0.0 2.3 2 0 0 2 2 2 0 Large polyvalent protein associated domain 30 SSP160 PF06933.11 gi|212224915|ref|YP_002308151.1| - 2.7 6.1 21.8 3.9 5.6 21.8 1.1 1 0 0 1 1 1 0 Special lobe-specific silk protein SSP160 BPD_transp_1 PF00528.22 gi|212224916|ref|YP_002308152.1| - 1.2e-35 122.9 15.4 1.2e-35 122.9 15.4 2.6 2 1 1 3 3 3 1 Binding-protein-dependent transport system inner membrane component Coq4 PF05019.13 gi|212224916|ref|YP_002308152.1| - 0.096 12.0 0.6 0.22 10.8 0.3 1.7 1 1 1 2 2 2 0 Coenzyme Q (ubiquinone) biosynthesis protein Coq4 BPD_transp_1 PF00528.22 gi|212224917|ref|YP_002308153.1| - 1.8e-28 99.6 14.6 1.8e-28 99.6 14.6 1.9 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.7 gi|212224917|ref|YP_002308153.1| - 7.9e-06 25.7 2.9 4.3e-05 23.4 0.0 3.3 3 0 0 3 3 3 1 N-terminal TM domain of oligopeptide transport permease C 2-oxogl_dehyd_N PF16078.5 gi|212224917|ref|YP_002308153.1| - 0.029 14.0 0.5 0.06 13.0 0.5 1.5 1 0 0 1 1 1 0 2-oxoglutarate dehydrogenase N-terminus ABC_tran PF00005.27 gi|212224918|ref|YP_002308154.1| - 1.9e-27 96.5 0.0 2.6e-27 96.0 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|212224918|ref|YP_002308154.1| - 6.8e-20 71.4 0.4 1.1e-19 70.7 0.4 1.3 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|212224918|ref|YP_002308154.1| - 5.2e-07 29.8 0.4 4.1e-06 26.8 0.0 2.0 1 1 1 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system RsgA_GTPase PF03193.16 gi|212224918|ref|YP_002308154.1| - 0.0031 17.5 0.2 0.0065 16.4 0.2 1.5 1 0 0 1 1 1 1 RsgA GTPase DnaB_C PF03796.15 gi|212224918|ref|YP_002308154.1| - 0.26 10.6 0.5 2.7 7.3 0.0 2.0 2 0 0 2 2 2 0 DnaB-like helicase C terminal domain ABC_tran PF00005.27 gi|212224919|ref|YP_002308155.1| - 6.3e-32 111.0 0.0 8.3e-32 110.6 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|212224919|ref|YP_002308155.1| - 9.2e-21 74.1 0.2 1.7e-20 73.3 0.2 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|212224919|ref|YP_002308155.1| - 0.00044 20.2 0.6 0.022 14.5 0.1 2.2 1 1 1 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 gi|212224919|ref|YP_002308155.1| - 0.002 18.4 0.1 0.0057 16.9 0.1 1.8 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|212224919|ref|YP_002308155.1| - 0.0025 17.3 0.0 0.0098 15.3 0.0 1.8 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain PRK PF00485.18 gi|212224919|ref|YP_002308155.1| - 0.0031 17.3 0.0 0.0047 16.7 0.0 1.2 1 0 0 1 1 1 1 Phosphoribulokinase / Uridine kinase family AAA_15 PF13175.6 gi|212224919|ref|YP_002308155.1| - 0.0082 15.9 0.0 0.01 15.6 0.0 1.2 1 0 0 1 1 1 1 AAA ATPase domain Rad17 PF03215.15 gi|212224919|ref|YP_002308155.1| - 0.022 14.7 0.0 0.032 14.1 0.0 1.2 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_16 PF13191.6 gi|212224919|ref|YP_002308155.1| - 0.024 15.0 0.0 0.048 14.0 0.0 1.5 2 0 0 2 2 2 0 AAA ATPase domain AAA_29 PF13555.6 gi|212224919|ref|YP_002308155.1| - 0.026 14.3 0.0 0.044 13.5 0.0 1.3 1 0 0 1 1 1 0 P-loop containing region of AAA domain RNA_helicase PF00910.22 gi|212224919|ref|YP_002308155.1| - 0.065 13.6 0.0 0.12 12.8 0.0 1.4 1 0 0 1 1 1 0 RNA helicase RsgA_GTPase PF03193.16 gi|212224919|ref|YP_002308155.1| - 0.088 12.7 0.0 0.16 11.9 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase IstB_IS21 PF01695.17 gi|212224919|ref|YP_002308155.1| - 0.11 12.3 0.0 0.2 11.4 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA PF00004.29 gi|212224919|ref|YP_002308155.1| - 0.18 12.2 0.0 0.37 11.2 0.0 1.6 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) Mg_chelatase PF01078.21 gi|212224919|ref|YP_002308155.1| - 0.18 11.1 0.0 0.32 10.4 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI DUF815 PF05673.13 gi|212224919|ref|YP_002308155.1| - 0.24 10.5 0.0 3 6.9 0.0 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF815) Gemini_mov PF01708.16 gi|212224920|ref|YP_002308156.1| - 0.25 11.1 0.9 0.81 9.5 0.3 1.9 2 0 0 2 2 2 0 Geminivirus putative movement protein NAD_synthase PF02540.17 gi|212224921|ref|YP_002308157.1| - 6.2e-88 294.0 0.0 7e-88 293.8 0.0 1.0 1 0 0 1 1 1 1 NAD synthase tRNA_Me_trans PF03054.16 gi|212224921|ref|YP_002308157.1| - 3.6e-07 29.3 0.0 1e-05 24.5 0.0 2.8 3 0 0 3 3 3 1 tRNA methyl transferase QueC PF06508.13 gi|212224921|ref|YP_002308157.1| - 4.1e-07 29.7 0.0 0.00087 18.8 0.0 2.2 2 0 0 2 2 2 2 Queuosine biosynthesis protein QueC ThiI PF02568.14 gi|212224921|ref|YP_002308157.1| - 0.00058 19.5 0.1 0.042 13.4 0.0 2.1 2 0 0 2 2 2 1 Thiamine biosynthesis protein (ThiI) Asn_synthase PF00733.21 gi|212224921|ref|YP_002308157.1| - 0.0026 17.5 0.0 0.0028 17.4 0.0 1.1 1 0 0 1 1 1 1 Asparagine synthase SASP PF00269.20 gi|212224921|ref|YP_002308157.1| - 0.052 13.6 0.0 0.49 10.5 0.0 2.4 2 0 0 2 2 2 0 Small, acid-soluble spore proteins, alpha/beta type Sigma70_r3 PF04539.16 gi|212224921|ref|YP_002308157.1| - 0.055 13.6 0.3 0.27 11.3 0.1 2.1 2 0 0 2 2 2 0 Sigma-70 region 3 PAPS_reduct PF01507.19 gi|212224921|ref|YP_002308157.1| - 0.097 12.7 0.0 14 5.6 0.0 2.2 2 0 0 2 2 2 0 Phosphoadenosine phosphosulfate reductase family ATP_bind_3 PF01171.20 gi|212224921|ref|YP_002308157.1| - 0.14 11.9 0.1 0.37 10.5 0.1 1.9 1 1 0 1 1 1 0 PP-loop family EamA PF00892.20 gi|212224922|ref|YP_002308158.1| - 6.1e-51 172.2 39.2 1.6e-26 93.1 11.2 2.0 2 0 0 2 2 2 2 EamA-like transporter family TPT PF03151.16 gi|212224922|ref|YP_002308158.1| - 9.7e-15 54.7 12.6 2.7e-09 36.8 5.6 2.1 1 1 1 2 2 2 2 Triose-phosphate Transporter family TMEM234 PF10639.9 gi|212224922|ref|YP_002308158.1| - 1.2e-06 28.6 7.4 0.00019 21.5 0.3 2.5 2 0 0 2 2 2 2 Putative transmembrane family 234 UAA PF08449.11 gi|212224922|ref|YP_002308158.1| - 0.0013 18.0 3.5 0.0013 18.0 3.5 3.6 1 1 0 2 2 2 1 UAA transporter family Multi_Drug_Res PF00893.19 gi|212224922|ref|YP_002308158.1| - 0.028 15.1 1.0 0.028 15.1 1.0 3.6 2 1 1 3 3 3 0 Small Multidrug Resistance protein EmrE PF13536.6 gi|212224922|ref|YP_002308158.1| - 0.073 12.6 16.0 7.8 6.0 0.4 2.3 1 1 1 2 2 2 0 Putative multidrug resistance efflux transporter DMT_6 PF04342.12 gi|212224922|ref|YP_002308158.1| - 2.9 8.2 9.4 1.8 8.8 0.5 3.2 2 1 2 4 4 4 0 Putative member of DMT superfamily (DUF486) Gln-synt_C PF00120.24 gi|212224923|ref|YP_002308159.1| - 4.8e-128 427.0 0.0 5.8e-128 426.7 0.0 1.1 1 0 0 1 1 1 1 Glutamine synthetase, catalytic domain Gln-synt_N PF03951.19 gi|212224923|ref|YP_002308159.1| - 2.1e-21 75.4 0.0 3.4e-21 74.8 0.0 1.3 1 0 0 1 1 1 1 Glutamine synthetase, beta-Grasp domain Gln-synt_N_2 PF16952.5 gi|212224923|ref|YP_002308159.1| - 0.0044 16.8 0.0 0.0083 15.9 0.0 1.4 1 0 0 1 1 1 1 Glutamine synthetase N-terminal domain DUF61 PF01886.16 gi|212224924|ref|YP_002308160.1| - 5.1e-34 117.1 0.1 5.6e-34 116.9 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF61 DUF373 PF04123.13 gi|212224925|ref|YP_002308161.1| - 1.8 7.9 8.2 2.1 7.7 8.2 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF373) DUF3324 PF11797.8 gi|212224926|ref|YP_002308162.1| - 0.0068 16.4 0.0 0.05 13.6 0.0 2.1 2 0 0 2 2 2 1 Protein of unknown function C-terminal (DUF3324) DUF4832 PF16116.5 gi|212224926|ref|YP_002308162.1| - 0.078 12.8 0.0 0.22 11.3 0.0 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4832) Peptidase_M42 PF05343.14 gi|212224926|ref|YP_002308162.1| - 0.098 11.7 0.0 0.16 11.0 0.0 1.2 1 0 0 1 1 1 0 M42 glutamyl aminopeptidase DUF4730 PF15873.5 gi|212224926|ref|YP_002308162.1| - 0.22 11.8 0.7 12 6.2 0.0 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4730) EamA PF00892.20 gi|212224927|ref|YP_002308163.1| - 1e-37 129.4 37.2 2.6e-19 69.8 12.7 2.0 2 0 0 2 2 2 2 EamA-like transporter family EIID-AGA PF03613.14 gi|212224927|ref|YP_002308163.1| - 0.084 12.0 4.4 0.31 10.2 0.3 2.6 2 1 0 2 2 2 0 PTS system mannose/fructose/sorbose family IID component Multi_Drug_Res PF00893.19 gi|212224927|ref|YP_002308163.1| - 0.27 11.9 15.1 0.26 12.0 1.4 2.7 2 1 0 2 2 2 0 Small Multidrug Resistance protein DUF2070 PF09843.9 gi|212224927|ref|YP_002308163.1| - 2.5 6.3 22.0 3.4 5.8 19.6 2.1 1 1 0 1 1 1 0 Predicted membrane protein (DUF2070) DNA_primase_S PF01896.19 gi|212224928|ref|YP_002308164.1| - 2.1e-14 54.0 0.1 1.2e-13 51.5 0.1 2.1 2 1 0 2 2 2 1 DNA primase small subunit RecR PF02132.15 gi|212224928|ref|YP_002308164.1| - 0.18 11.4 0.3 0.33 10.6 0.3 1.4 1 0 0 1 1 1 0 RecR protein DNA_primase_lrg PF04104.14 gi|212224929|ref|YP_002308165.1| - 9.1e-31 107.2 0.0 3e-30 105.5 0.0 1.6 1 1 0 1 1 1 1 Eukaryotic and archaeal DNA primase, large subunit ATPase PF06745.13 gi|212224930|ref|YP_002308166.1| - 5.3e-77 258.3 0.1 6e-77 258.1 0.1 1.0 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.6 gi|212224930|ref|YP_002308166.1| - 3.6e-10 39.7 0.0 5.4e-10 39.2 0.0 1.2 1 0 0 1 1 1 1 AAA domain GvpD PF07088.11 gi|212224930|ref|YP_002308166.1| - 2.4e-08 33.1 0.1 3.3e-08 32.6 0.1 1.1 1 0 0 1 1 1 1 GvpD gas vesicle protein DnaB_C PF03796.15 gi|212224930|ref|YP_002308166.1| - 0.00027 20.4 0.0 0.0018 17.6 0.0 1.9 1 1 0 1 1 1 1 DnaB-like helicase C terminal domain T2SSE PF00437.20 gi|212224930|ref|YP_002308166.1| - 0.00039 19.6 0.1 0.00068 18.8 0.1 1.4 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_18 PF13238.6 gi|212224930|ref|YP_002308166.1| - 0.0011 19.5 0.5 0.0055 17.2 0.5 2.1 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|212224930|ref|YP_002308166.1| - 0.0019 18.5 0.0 0.0046 17.2 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_14 PF13173.6 gi|212224930|ref|YP_002308166.1| - 0.0072 16.4 0.0 0.018 15.1 0.0 1.6 1 1 0 1 1 1 1 AAA domain RecA PF00154.21 gi|212224930|ref|YP_002308166.1| - 0.0082 15.6 0.1 0.023 14.1 0.0 1.7 2 0 0 2 2 2 1 recA bacterial DNA recombination protein AAA_29 PF13555.6 gi|212224930|ref|YP_002308166.1| - 0.016 14.9 0.1 0.035 13.8 0.1 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain Rad51 PF08423.11 gi|212224930|ref|YP_002308166.1| - 0.029 13.6 0.1 0.05 12.9 0.1 1.4 1 0 0 1 1 1 0 Rad51 ATPase_2 PF01637.18 gi|212224930|ref|YP_002308166.1| - 0.036 14.0 0.1 0.07 13.0 0.1 1.5 1 1 0 1 1 1 0 ATPase domain predominantly from Archaea AAA_16 PF13191.6 gi|212224930|ref|YP_002308166.1| - 0.046 14.1 0.4 0.074 13.4 0.4 1.7 1 1 0 1 1 1 0 AAA ATPase domain AAA_33 PF13671.6 gi|212224930|ref|YP_002308166.1| - 0.053 13.7 0.0 0.082 13.1 0.0 1.5 1 1 0 1 1 1 0 AAA domain PAXNEB PF05625.11 gi|212224930|ref|YP_002308166.1| - 0.063 12.4 0.3 0.15 11.1 0.1 1.6 2 0 0 2 2 2 0 PAXNEB protein DEAD PF00270.29 gi|212224930|ref|YP_002308166.1| - 0.068 12.9 0.1 0.12 12.2 0.1 1.4 1 1 0 1 1 1 0 DEAD/DEAH box helicase NACHT PF05729.12 gi|212224930|ref|YP_002308166.1| - 0.069 13.1 0.0 0.32 10.9 0.0 2.0 2 0 0 2 2 2 0 NACHT domain AAA_24 PF13479.6 gi|212224930|ref|YP_002308166.1| - 0.078 12.7 0.2 0.13 11.9 0.2 1.6 1 1 0 1 1 1 0 AAA domain LAGLIDADG_WhiA PF14527.6 gi|212224930|ref|YP_002308166.1| - 0.081 13.0 0.2 0.33 11.1 0.0 2.0 2 0 0 2 2 2 0 WhiA LAGLIDADG-like domain NTPase_1 PF03266.15 gi|212224930|ref|YP_002308166.1| - 0.09 12.7 0.4 0.16 11.8 0.4 1.5 1 1 0 1 1 1 0 NTPase AAA_19 PF13245.6 gi|212224930|ref|YP_002308166.1| - 0.11 12.8 0.1 0.14 12.5 0.1 1.5 1 1 0 1 1 1 0 AAA domain DUF2075 PF09848.9 gi|212224930|ref|YP_002308166.1| - 0.16 11.1 0.4 0.29 10.3 0.3 1.5 1 1 1 2 2 2 0 Uncharacterized conserved protein (DUF2075) Sigma54_activat PF00158.26 gi|212224930|ref|YP_002308166.1| - 0.17 11.6 0.0 0.4 10.4 0.0 1.6 2 0 0 2 2 2 0 Sigma-54 interaction domain AAA_23 PF13476.6 gi|212224930|ref|YP_002308166.1| - 0.22 12.0 1.1 0.53 10.8 1.1 1.6 1 0 0 1 1 1 0 AAA domain tRNA_anti-codon PF01336.25 gi|212224931|ref|YP_002308167.1| - 0.0015 18.5 4.9 0.8 9.7 0.0 3.8 4 1 1 5 5 5 2 OB-fold nucleic acid binding domain TctA PF01970.16 gi|212224932|ref|YP_002308168.1| - 4.5e-39 134.3 37.8 5.9e-39 133.9 37.8 1.2 1 0 0 1 1 1 1 Tripartite tricarboxylate transporter TctA family Methyltrans_SAM PF10672.9 gi|212224934|ref|YP_002308170.1| - 3.8e-20 72.2 0.0 5.2e-20 71.8 0.0 1.2 1 0 0 1 1 1 1 S-adenosylmethionine-dependent methyltransferase Met_10 PF02475.16 gi|212224934|ref|YP_002308170.1| - 1.5e-18 67.2 0.3 2.3e-18 66.7 0.3 1.3 1 0 0 1 1 1 1 Met-10+ like-protein PUA_3 PF17785.1 gi|212224934|ref|YP_002308170.1| - 2.3e-16 59.4 0.2 4.9e-16 58.3 0.2 1.6 1 0 0 1 1 1 1 PUA-like domain Methyltransf_31 PF13847.6 gi|212224934|ref|YP_002308170.1| - 2.5e-14 53.3 0.0 4.8e-14 52.4 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain PUA PF01472.20 gi|212224934|ref|YP_002308170.1| - 2.4e-13 49.8 1.0 5.5e-13 48.7 1.0 1.7 1 0 0 1 1 1 1 PUA domain PrmA PF06325.13 gi|212224934|ref|YP_002308170.1| - 5.8e-13 48.9 0.0 9.8e-13 48.1 0.0 1.3 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Cons_hypoth95 PF03602.15 gi|212224934|ref|YP_002308170.1| - 8.3e-13 48.4 0.0 1.6e-12 47.4 0.0 1.5 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_3 PF01596.17 gi|212224934|ref|YP_002308170.1| - 2.5e-10 39.9 0.2 6.2e-10 38.6 0.2 1.7 1 1 0 1 1 1 1 O-methyltransferase Methyltransf_15 PF09445.10 gi|212224934|ref|YP_002308170.1| - 4.6e-10 39.3 0.0 8.1e-10 38.5 0.0 1.4 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_25 PF13649.6 gi|212224934|ref|YP_002308170.1| - 3.7e-09 37.2 0.0 8.9e-09 35.9 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain TRM PF02005.16 gi|212224934|ref|YP_002308170.1| - 2.4e-08 33.6 0.0 3.2e-08 33.1 0.0 1.2 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase MTS PF05175.14 gi|212224934|ref|YP_002308170.1| - 3.4e-07 30.0 0.1 5.7e-07 29.2 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase small domain UPF0020 PF01170.18 gi|212224934|ref|YP_002308170.1| - 3e-06 27.1 0.0 0.00027 20.7 0.0 2.8 2 1 0 2 2 2 1 Putative RNA methylase family UPF0020 Ubie_methyltran PF01209.18 gi|212224934|ref|YP_002308170.1| - 4.6e-05 22.9 0.1 0.00013 21.4 0.1 1.7 1 1 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_18 PF12847.7 gi|212224934|ref|YP_002308170.1| - 8e-05 22.6 0.0 0.00016 21.6 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|212224934|ref|YP_002308170.1| - 0.00028 21.4 0.0 0.00075 20.1 0.0 1.8 1 0 0 1 1 1 1 Methyltransferase domain FtsJ PF01728.19 gi|212224934|ref|YP_002308170.1| - 0.00039 20.6 0.0 0.00068 19.8 0.0 1.3 1 0 0 1 1 1 1 FtsJ-like methyltransferase Methyltr_RsmB-F PF01189.17 gi|212224934|ref|YP_002308170.1| - 0.0014 18.3 0.0 0.046 13.4 0.0 2.3 1 1 0 1 1 1 1 16S rRNA methyltransferase RsmB/F Methyltransf_23 PF13489.6 gi|212224934|ref|YP_002308170.1| - 0.0031 17.4 0.0 0.0055 16.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain DUF43 PF01861.16 gi|212224934|ref|YP_002308170.1| - 0.027 13.7 0.0 0.054 12.7 0.0 1.4 1 0 0 1 1 1 0 Branched-chain polyamine synthase A C-terminal domain ADH_zinc_N PF00107.26 gi|212224934|ref|YP_002308170.1| - 0.037 14.0 0.6 0.093 12.7 0.1 1.9 2 0 0 2 2 2 0 Zinc-binding dehydrogenase PCMT PF01135.19 gi|212224934|ref|YP_002308170.1| - 0.058 13.1 0.0 0.14 11.9 0.0 1.5 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) UPF0113 PF03657.13 gi|212224934|ref|YP_002308170.1| - 0.062 13.6 0.2 0.19 12.0 0.2 2.0 1 0 0 1 1 1 0 UPF0113 PUA domain FACT-Spt16_Nlob PF14826.6 gi|212224934|ref|YP_002308170.1| - 0.082 12.7 0.1 0.72 9.6 0.1 2.1 2 0 0 2 2 2 0 FACT complex subunit SPT16 N-terminal lobe domain CMAS PF02353.20 gi|212224934|ref|YP_002308170.1| - 0.083 12.2 0.0 0.15 11.4 0.0 1.4 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase SOR_SNZ PF01680.17 gi|212224934|ref|YP_002308170.1| - 0.11 12.3 2.9 26 4.5 0.0 3.1 3 0 0 3 3 3 0 SOR/SNZ family Methyltransf_10 PF05971.12 gi|212224935|ref|YP_002308171.1| - 1e-09 38.2 0.0 3.7e-09 36.4 0.0 1.7 1 1 0 1 1 1 1 RNA methyltransferase Methyltransf_25 PF13649.6 gi|212224935|ref|YP_002308171.1| - 5.2e-07 30.3 0.0 1.1e-06 29.3 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|212224935|ref|YP_002308171.1| - 1.8e-06 27.6 0.0 4.2e-05 23.1 0.0 2.1 2 0 0 2 2 2 1 Methyltransferase small domain PrmA PF06325.13 gi|212224935|ref|YP_002308171.1| - 2.2e-06 27.3 0.0 3.2e-06 26.8 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_31 PF13847.6 gi|212224935|ref|YP_002308171.1| - 0.00023 21.0 0.0 0.00032 20.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|212224935|ref|YP_002308171.1| - 0.00032 21.3 0.0 0.00073 20.1 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|212224935|ref|YP_002308171.1| - 0.0007 20.3 0.0 0.0012 19.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.19 gi|212224935|ref|YP_002308171.1| - 0.0036 17.1 0.0 0.0051 16.6 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_18 PF12847.7 gi|212224935|ref|YP_002308171.1| - 0.0043 17.0 0.0 0.006 16.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.20 gi|212224935|ref|YP_002308171.1| - 0.0046 16.1 0.0 0.0065 15.6 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_23 PF13489.6 gi|212224935|ref|YP_002308171.1| - 0.011 15.5 0.0 0.017 15.0 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain Cons_hypoth95 PF03602.15 gi|212224935|ref|YP_002308171.1| - 0.012 15.3 0.0 0.029 14.0 0.0 1.6 2 0 0 2 2 2 0 Conserved hypothetical protein 95 CMAS PF02353.20 gi|212224935|ref|YP_002308171.1| - 0.027 13.8 0.0 0.042 13.2 0.0 1.2 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase UPF0146 PF03686.13 gi|212224935|ref|YP_002308171.1| - 0.11 12.4 0.0 0.18 11.7 0.0 1.3 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0146) Methyltransf_4 PF02390.17 gi|212224935|ref|YP_002308171.1| - 0.13 11.8 0.0 0.2 11.1 0.0 1.3 1 0 0 1 1 1 0 Putative methyltransferase Methyltransf_16 PF10294.9 gi|212224935|ref|YP_002308171.1| - 0.14 11.9 0.0 0.2 11.4 0.0 1.2 1 0 0 1 1 1 0 Lysine methyltransferase Peptidase_M20 PF01546.28 gi|212224936|ref|YP_002308172.1| - 1.6e-37 129.2 0.0 2e-37 128.9 0.0 1.1 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 gi|212224936|ref|YP_002308172.1| - 3.2e-22 78.5 0.0 1.7e-21 76.2 0.0 2.0 2 0 0 2 2 2 1 Peptidase dimerisation domain Peptidase_M28 PF04389.17 gi|212224936|ref|YP_002308172.1| - 1.9e-05 24.4 0.0 3.3e-05 23.7 0.0 1.4 1 0 0 1 1 1 1 Peptidase family M28 PqqD PF05402.12 gi|212224937|ref|YP_002308173.1| - 1.5e-16 60.4 0.0 1.7e-16 60.3 0.0 1.2 1 0 0 1 1 1 1 Coenzyme PQQ synthesis protein D (PqqD) DUF4317 PF14199.6 gi|212224937|ref|YP_002308173.1| - 0.1 11.7 0.0 0.15 11.2 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4317) OPT PF03169.15 gi|212224938|ref|YP_002308174.1| - 3e-102 343.3 50.3 3.6e-102 343.0 50.3 1.1 1 0 0 1 1 1 1 OPT oligopeptide transporter protein Mannosyl_trans2 PF04188.13 gi|212224938|ref|YP_002308174.1| - 4.7 6.4 7.1 1.9 7.7 3.1 2.2 3 0 0 3 3 3 0 Mannosyltransferase (PIG-V) Lactamase_B_2 PF12706.7 gi|212224939|ref|YP_002308175.1| - 1.3e-25 90.2 0.2 1.6e-25 89.8 0.2 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|212224939|ref|YP_002308175.1| - 2.2e-06 27.7 0.0 4.4e-06 26.7 0.0 1.6 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|212224939|ref|YP_002308175.1| - 0.00035 20.7 0.7 0.0063 16.5 0.7 2.4 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily PGM_PMM_I PF02878.16 gi|212224940|ref|YP_002308176.1| - 3.8e-40 136.8 0.0 2.1e-39 134.4 0.0 2.1 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.16 gi|212224940|ref|YP_002308176.1| - 1.1e-24 87.0 0.1 2e-24 86.2 0.1 1.4 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_IV PF00408.20 gi|212224940|ref|YP_002308176.1| - 4.8e-13 49.1 0.8 2.5e-12 46.8 0.1 2.5 3 0 0 3 3 3 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain PGM_PMM_III PF02880.16 gi|212224940|ref|YP_002308176.1| - 5.3e-08 33.0 0.0 1.1e-07 32.1 0.0 1.5 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III UPF0146 PF03686.13 gi|212224941|ref|YP_002308177.1| - 6.1e-29 100.5 0.0 6.8e-29 100.4 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0146) ADH_zinc_N PF00107.26 gi|212224941|ref|YP_002308177.1| - 0.0082 16.1 0.0 0.015 15.3 0.0 1.5 1 1 0 1 1 1 1 Zinc-binding dehydrogenase TrkA_N PF02254.18 gi|212224941|ref|YP_002308177.1| - 0.0096 16.2 0.0 0.015 15.6 0.0 1.2 1 0 0 1 1 1 1 TrkA-N domain TehB PF03848.14 gi|212224941|ref|YP_002308177.1| - 0.075 12.4 0.0 0.11 11.9 0.0 1.2 1 0 0 1 1 1 0 Tellurite resistance protein TehB PPS_PS PF02006.16 gi|212224941|ref|YP_002308177.1| - 0.11 12.0 0.0 0.14 11.7 0.0 1.1 1 0 0 1 1 1 0 Phosphopantothenate/pantothenate synthetase AlaDh_PNT_C PF01262.21 gi|212224941|ref|YP_002308177.1| - 0.15 11.3 0.0 0.19 11.0 0.0 1.1 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Methyltransf_23 PF13489.6 gi|212224941|ref|YP_002308177.1| - 0.21 11.4 0.0 0.21 11.4 0.0 1.1 1 0 0 1 1 1 0 Methyltransferase domain ABC_tran PF00005.27 gi|212224942|ref|YP_002308178.1| - 1.9e-32 112.6 0.0 3.3e-32 111.9 0.0 1.4 1 0 0 1 1 1 1 ABC transporter OB_MalK PF17912.1 gi|212224942|ref|YP_002308178.1| - 3.1e-16 60.0 0.0 1.1e-15 58.1 0.0 2.1 1 0 0 1 1 1 1 MalK OB fold domain TOBE_2 PF08402.10 gi|212224942|ref|YP_002308178.1| - 1.1e-07 31.9 0.0 2.7e-07 30.6 0.0 1.7 1 0 0 1 1 1 1 TOBE domain AAA_21 PF13304.6 gi|212224942|ref|YP_002308178.1| - 8.2e-06 25.8 0.0 0.056 13.2 0.0 2.2 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|212224942|ref|YP_002308178.1| - 9.2e-05 22.0 0.1 0.00064 19.2 0.0 2.2 2 1 0 2 2 2 1 RecF/RecN/SMC N terminal domain Rad17 PF03215.15 gi|212224942|ref|YP_002308178.1| - 0.0004 20.4 0.0 0.00063 19.7 0.0 1.3 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_22 PF13401.6 gi|212224942|ref|YP_002308178.1| - 0.0013 19.1 0.4 0.0045 17.3 0.4 2.0 1 1 0 1 1 1 1 AAA domain Syntaxin PF00804.25 gi|212224942|ref|YP_002308178.1| - 0.0055 16.4 0.2 0.0098 15.6 0.2 1.4 1 0 0 1 1 1 1 Syntaxin AAA_16 PF13191.6 gi|212224942|ref|YP_002308178.1| - 0.0062 16.9 0.1 0.024 15.0 0.0 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA PF00004.29 gi|212224942|ref|YP_002308178.1| - 0.0088 16.5 0.3 0.029 14.8 0.2 1.9 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_15 PF13175.6 gi|212224942|ref|YP_002308178.1| - 0.023 14.4 0.0 0.043 13.5 0.0 1.4 1 0 0 1 1 1 0 AAA ATPase domain TOBE PF03459.17 gi|212224942|ref|YP_002308178.1| - 0.027 14.7 0.1 0.085 13.2 0.1 1.9 1 1 0 1 1 1 0 TOBE domain CysA_C_terminal PF17850.1 gi|212224942|ref|YP_002308178.1| - 0.036 14.6 0.0 0.16 12.6 0.0 2.2 2 0 0 2 2 2 0 CysA C-terminal regulatory domain AAA_29 PF13555.6 gi|212224942|ref|YP_002308178.1| - 0.038 13.7 0.0 0.1 12.3 0.0 1.7 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_25 PF13481.6 gi|212224942|ref|YP_002308178.1| - 0.039 13.5 0.0 0.97 9.0 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_30 PF13604.6 gi|212224942|ref|YP_002308178.1| - 0.045 13.5 0.1 0.12 12.1 0.0 1.7 2 0 0 2 2 2 0 AAA domain RsgA_GTPase PF03193.16 gi|212224942|ref|YP_002308178.1| - 0.051 13.5 0.0 0.11 12.4 0.0 1.5 1 0 0 1 1 1 0 RsgA GTPase AAA_23 PF13476.6 gi|212224942|ref|YP_002308178.1| - 0.071 13.6 0.1 0.14 12.6 0.1 1.4 1 0 0 1 1 1 0 AAA domain AAA_19 PF13245.6 gi|212224942|ref|YP_002308178.1| - 0.092 13.1 0.1 0.23 11.8 0.1 1.6 1 0 0 1 1 1 0 AAA domain AAA_27 PF13514.6 gi|212224942|ref|YP_002308178.1| - 0.095 12.3 0.0 0.17 11.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|212224942|ref|YP_002308178.1| - 0.16 11.9 0.3 0.34 10.8 0.1 1.6 2 0 0 2 2 2 0 NACHT domain AAA_28 PF13521.6 gi|212224942|ref|YP_002308178.1| - 0.2 11.9 0.3 0.51 10.6 0.1 1.7 2 0 0 2 2 2 0 AAA domain G-alpha PF00503.20 gi|212224942|ref|YP_002308178.1| - 0.23 10.6 0.0 0.36 9.9 0.0 1.2 1 0 0 1 1 1 0 G-protein alpha subunit Glucodextran_C PF09985.9 gi|212224943|ref|YP_002308179.1| - 1.4e-148 492.5 4.1 7.1e-74 248.1 0.1 2.6 3 0 0 3 3 3 2 C-terminal binding-module, SLH-like, of glucodextranase Glyco_hydro_57 PF03065.15 gi|212224943|ref|YP_002308179.1| - 3.3e-106 355.2 4.4 4.8e-106 354.6 4.4 1.2 1 0 0 1 1 1 1 Glycosyl hydrolase family 57 Secretin_N PF03958.17 gi|212224943|ref|YP_002308179.1| - 0.039 14.4 0.0 4.3 7.8 0.0 2.6 2 0 0 2 2 2 0 Bacterial type II/III secretion system short domain MYEOV2 PF15004.6 gi|212224943|ref|YP_002308179.1| - 0.044 14.2 0.2 1.3e+02 3.1 0.0 4.6 4 0 0 4 4 4 0 Myeloma-overexpressed-like BPD_transp_1 PF00528.22 gi|212224944|ref|YP_002308180.1| - 1.2e-14 54.4 23.1 1.2e-14 54.4 23.1 2.5 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component Ac76 PF05814.11 gi|212224944|ref|YP_002308180.1| - 0.055 13.5 0.7 0.055 13.5 0.7 3.2 4 0 0 4 4 4 0 Orf76 (Ac76) Baculo_11_kDa PF06143.11 gi|212224944|ref|YP_002308180.1| - 0.074 12.6 0.3 0.22 11.1 0.3 1.7 1 0 0 1 1 1 0 Baculovirus 11 kDa family BPD_transp_1 PF00528.22 gi|212224945|ref|YP_002308181.1| - 1.7e-15 57.2 16.4 1.7e-15 57.2 16.4 2.3 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component TM_PBP2_N PF16296.5 gi|212224945|ref|YP_002308181.1| - 0.0059 16.7 0.5 0.015 15.4 0.5 1.7 1 0 0 1 1 1 1 N-terminal of TM subunit in PBP-dependent ABC transporters GTA_holin_3TM PF11351.8 gi|212224945|ref|YP_002308181.1| - 0.6 10.7 2.6 5 7.7 1.0 2.6 1 1 1 2 2 2 0 Holin of 3TMs, for gene-transfer release SBP_bac_8 PF13416.6 gi|212224946|ref|YP_002308182.1| - 2.5e-51 175.1 8.4 3.5e-51 174.7 8.4 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|212224946|ref|YP_002308182.1| - 9e-40 137.5 14.4 1.3e-39 137.1 14.4 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.6 gi|212224946|ref|YP_002308182.1| - 3.8e-08 33.0 1.9 1.4e-06 27.9 0.6 2.2 2 0 0 2 2 2 2 Bacterial extracellular solute-binding protein Ribosomal_S6 PF01250.17 gi|212224946|ref|YP_002308182.1| - 0.029 14.6 0.5 0.24 11.7 0.0 2.7 3 1 1 4 4 4 0 Ribosomal protein S6 CRISPR_Cas9_WED PF18061.1 gi|212224946|ref|YP_002308182.1| - 0.17 12.0 0.1 0.36 10.9 0.1 1.5 1 0 0 1 1 1 0 CRISPR-Cas9 WED domain Alpha-amylase PF00128.24 gi|212224947|ref|YP_002308183.1| - 4.2e-64 217.2 0.0 5.7e-64 216.8 0.0 1.1 1 0 0 1 1 1 1 Alpha amylase, catalytic domain Alpha-amylase_N PF02903.14 gi|212224947|ref|YP_002308183.1| - 3.4e-11 43.3 0.1 6.1e-10 39.3 0.1 2.7 2 1 0 2 2 2 1 Alpha amylase, N-terminal ig-like domain AMPK1_CBM PF16561.5 gi|212224947|ref|YP_002308183.1| - 1.3e-07 31.7 0.0 3.4e-07 30.4 0.0 1.7 2 0 0 2 2 2 1 Glycogen recognition site of AMP-activated protein kinase CBM_48 PF02922.18 gi|212224947|ref|YP_002308183.1| - 4.1e-05 23.8 0.1 0.015 15.7 0.0 2.6 2 0 0 2 2 2 2 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) Malt_amylase_C PF16657.5 gi|212224947|ref|YP_002308183.1| - 0.049 13.8 0.0 0.17 12.0 0.0 2.0 2 0 0 2 2 2 0 Maltogenic Amylase, C-terminal domain DUF4325 PF14213.6 gi|212224947|ref|YP_002308183.1| - 0.15 11.8 1.1 12 5.7 0.3 2.5 1 1 1 2 2 2 0 STAS-like domain of unknown function (DUF4325) Regulator_TrmB PF11495.8 gi|212224948|ref|YP_002308184.1| - 6.6e-52 176.0 0.1 8.3e-52 175.7 0.1 1.1 1 0 0 1 1 1 1 Archaeal transcriptional regulator TrmB TrmB PF01978.19 gi|212224948|ref|YP_002308184.1| - 7.6e-25 86.6 0.0 1.3e-24 85.9 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_9 PF08221.11 gi|212224948|ref|YP_002308184.1| - 0.011 15.8 0.0 0.025 14.7 0.0 1.5 1 0 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain Rrf2 PF02082.20 gi|212224948|ref|YP_002308184.1| - 0.016 15.5 0.0 0.036 14.4 0.0 1.6 1 1 0 1 1 1 0 Transcriptional regulator HTH_IclR PF09339.10 gi|212224948|ref|YP_002308184.1| - 0.073 12.9 0.0 0.15 11.9 0.0 1.5 1 0 0 1 1 1 0 IclR helix-turn-helix domain LexA_DNA_bind PF01726.16 gi|212224948|ref|YP_002308184.1| - 0.14 12.0 0.1 0.38 10.5 0.0 1.8 2 0 0 2 2 2 0 LexA DNA binding domain Sda PF08970.10 gi|212224948|ref|YP_002308184.1| - 0.64 9.8 3.0 0.35 10.6 0.4 1.9 2 1 1 3 3 3 0 Sporulation inhibitor A Glyco_transf_5 PF08323.11 gi|212224949|ref|YP_002308185.1| - 1.2e-36 126.7 0.0 2.2e-36 125.8 0.0 1.4 1 0 0 1 1 1 1 Starch synthase catalytic domain Glycos_transf_1 PF00534.20 gi|212224949|ref|YP_002308185.1| - 7.1e-24 84.2 0.0 1.2e-23 83.5 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|212224949|ref|YP_002308185.1| - 1.3e-21 77.4 0.0 2.4e-21 76.6 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|212224949|ref|YP_002308185.1| - 1.1e-20 74.4 1.3 6.1e-20 71.9 0.7 2.3 2 1 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|212224949|ref|YP_002308185.1| - 2.3e-14 54.1 0.1 5.8e-14 52.8 0.0 1.7 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_trans_4_2 PF13477.6 gi|212224949|ref|YP_002308185.1| - 5e-05 23.4 0.0 0.0049 16.9 0.0 2.3 1 1 0 1 1 1 1 Glycosyl transferase 4-like Glyco_trans_1_2 PF13524.6 gi|212224949|ref|YP_002308185.1| - 0.075 13.4 0.0 0.19 12.1 0.0 1.7 1 0 0 1 1 1 0 Glycosyl transferases group 1 AmpE PF17113.5 gi|212224949|ref|YP_002308185.1| - 0.19 11.0 0.0 0.31 10.3 0.0 1.2 1 0 0 1 1 1 0 Regulatory signalling modulator protein AmpE Glycogen_syn PF05693.13 gi|212224949|ref|YP_002308185.1| - 0.22 10.0 0.1 6.2 5.2 0.0 2.8 4 0 0 4 4 4 0 Glycogen synthase RNase_P_Rpp14 PF01900.19 gi|212224950|ref|YP_002308186.1| - 3e-23 82.0 0.1 3.4e-23 81.8 0.1 1.0 1 0 0 1 1 1 1 Rpp14/Pop5 family Radical_SAM PF04055.21 gi|212224951|ref|YP_002308187.1| - 2e-14 54.3 0.1 5.2e-14 53.0 0.0 1.8 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_14 PF13394.6 gi|212224951|ref|YP_002308187.1| - 4.5e-06 26.8 0.0 7.9e-06 26.0 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.6 gi|212224951|ref|YP_002308187.1| - 1.3e-05 25.5 0.0 3e-05 24.3 0.0 1.6 2 0 0 2 2 2 1 4Fe-4S single cluster domain Amastin PF07344.11 gi|212224952|ref|YP_002308188.1| - 0.18 11.7 4.2 0.055 13.3 0.4 2.0 2 1 0 2 2 2 0 Amastin surface glycoprotein VAPB_antitox PF02697.14 gi|212224953|ref|YP_002308189.1| - 2.3e-05 25.1 0.1 3e-05 24.7 0.1 1.2 1 0 0 1 1 1 1 Putative antitoxin TcdB_N PF12918.7 gi|212224953|ref|YP_002308189.1| - 0.0012 19.1 0.0 0.0014 18.9 0.0 1.1 1 0 0 1 1 1 1 TcdB toxin N-terminal helical domain Uds1 PF15456.6 gi|212224953|ref|YP_002308189.1| - 0.013 15.7 0.1 0.016 15.4 0.1 1.1 1 0 0 1 1 1 0 Up-regulated During Septation TPD52 PF04201.15 gi|212224953|ref|YP_002308189.1| - 0.04 13.5 0.1 0.04 13.5 0.1 1.1 1 0 0 1 1 1 0 Tumour protein D52 family Glu-tRNAGln PF02686.15 gi|212224953|ref|YP_002308189.1| - 0.16 12.3 1.5 0.42 10.9 0.4 2.1 3 0 0 3 3 3 0 Glu-tRNAGln amidotransferase C subunit tRNA-synt_1 PF00133.22 gi|212224954|ref|YP_002308190.1| - 2.5e-189 630.4 8.6 2.5e-189 630.4 8.6 1.5 2 0 0 2 2 2 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.13 gi|212224954|ref|YP_002308190.1| - 1.1e-38 132.6 0.2 2.6e-38 131.3 0.2 1.7 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.11 gi|212224954|ref|YP_002308190.1| - 2.9e-25 88.8 6.1 6.9e-09 34.9 0.6 3.9 3 1 0 3 3 3 3 tRNA synthetases class I (M) tRNA-synt_1e PF01406.19 gi|212224954|ref|YP_002308190.1| - 1.2e-07 31.4 0.0 3.9e-05 23.1 0.0 2.5 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1f PF01921.18 gi|212224954|ref|YP_002308190.1| - 7e-05 21.9 0.0 0.011 14.7 0.0 2.6 2 0 0 2 2 2 2 tRNA synthetases class I (K) tRNA-synt_1_2 PF13603.6 gi|212224954|ref|YP_002308190.1| - 0.0027 17.2 0.0 0.017 14.6 0.0 2.1 1 1 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 DUF4720 PF15846.5 gi|212224954|ref|YP_002308190.1| - 0.027 14.3 0.0 5.4 6.9 0.0 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4720) Efg1 PF10153.9 gi|212224954|ref|YP_002308190.1| - 3.8 7.9 5.6 0.76 10.2 1.0 2.1 2 0 0 2 2 2 0 rRNA-processing protein Efg1 DUF3140 PF11338.8 gi|212224955|ref|YP_002308191.1| - 0.076 13.5 0.3 0.15 12.5 0.1 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF3140) DUF2281 PF10047.9 gi|212224955|ref|YP_002308191.1| - 0.076 13.7 0.3 0.076 13.7 0.3 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF2281) EamA PF00892.20 gi|212224956|ref|YP_002308192.1| - 2.7e-40 137.7 25.5 5.8e-21 75.1 10.5 2.1 2 0 0 2 2 2 2 EamA-like transporter family TPT PF03151.16 gi|212224956|ref|YP_002308192.1| - 1e-07 31.6 6.5 4.3e-06 26.3 2.3 2.1 1 1 1 2 2 2 2 Triose-phosphate Transporter family PUNUT PF16913.5 gi|212224956|ref|YP_002308192.1| - 0.14 11.3 10.8 0.21 10.7 9.0 2.0 1 1 1 2 2 2 0 Purine nucleobase transmembrane transport DUF805 PF05656.14 gi|212224956|ref|YP_002308192.1| - 4.6 7.7 9.4 0.24 11.8 1.8 2.5 1 1 1 2 2 2 0 Protein of unknown function (DUF805) Fer4_6 PF12837.7 gi|212224957|ref|YP_002308193.1| - 8.1e-11 41.5 31.8 0.00012 22.0 2.7 4.2 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_21 PF14697.6 gi|212224957|ref|YP_002308193.1| - 1.5e-09 37.8 19.7 0.001 19.1 9.0 3.3 3 0 0 3 3 3 3 4Fe-4S dicluster domain Fer4_11 PF13247.6 gi|212224957|ref|YP_002308193.1| - 2e-09 37.5 10.5 2e-09 37.5 10.5 2.1 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|212224957|ref|YP_002308193.1| - 4.1e-09 36.9 22.1 8e-05 23.2 11.3 3.2 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|212224957|ref|YP_002308193.1| - 4.5e-09 36.3 47.2 1.4e-06 28.3 9.6 3.1 1 1 3 4 4 4 4 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|212224957|ref|YP_002308193.1| - 1.3e-08 34.4 31.9 9.9e-05 22.2 2.7 4.2 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4 PF00037.27 gi|212224957|ref|YP_002308193.1| - 1.6e-07 30.8 12.8 8.5e-06 25.4 3.0 5.2 6 0 0 6 6 6 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|212224957|ref|YP_002308193.1| - 4.3e-07 29.9 27.8 0.00054 20.0 10.6 3.0 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|212224957|ref|YP_002308193.1| - 8e-05 22.8 31.6 0.019 15.4 2.7 4.2 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_3 PF12798.7 gi|212224957|ref|YP_002308193.1| - 0.0013 19.5 39.4 0.02 15.8 5.1 4.3 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|212224957|ref|YP_002308193.1| - 0.28 11.7 24.4 0.65 10.6 0.7 4.1 3 1 0 3 3 3 0 4Fe-4S dicluster domain Glycoprotein_G PF00802.19 gi|212224957|ref|YP_002308193.1| - 0.3 10.4 0.1 0.43 9.9 0.1 1.2 1 0 0 1 1 1 0 Pneumovirus attachment glycoprotein G Fer4_8 PF13183.6 gi|212224957|ref|YP_002308193.1| - 0.53 10.8 28.0 5.7 7.5 9.7 3.8 2 2 0 2 2 2 0 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|212224957|ref|YP_002308193.1| - 0.58 11.1 26.5 0.55 11.2 3.9 4.2 3 1 1 4 4 4 0 4Fe-4S double cluster binding domain AFOR_C PF01314.18 gi|212224958|ref|YP_002308194.1| - 8e-78 262.1 0.0 1.2e-77 261.5 0.0 1.2 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.15 gi|212224958|ref|YP_002308194.1| - 6.7e-60 202.3 0.2 9.4e-60 201.9 0.2 1.2 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain SHOCT PF09851.9 gi|212224958|ref|YP_002308194.1| - 0.21 11.4 1.0 0.6 9.9 0.3 2.2 2 0 0 2 2 2 0 Short C-terminal domain ThiS PF02597.20 gi|212224959|ref|YP_002308195.1| - 8.1e-12 45.6 0.1 8.7e-12 45.5 0.1 1.1 1 0 0 1 1 1 1 ThiS family Ub-Mut7C PF14451.6 gi|212224959|ref|YP_002308195.1| - 2.5e-05 24.0 0.1 3.1e-05 23.7 0.1 1.2 1 0 0 1 1 1 1 Mut7-C ubiquitin TGS PF02824.21 gi|212224959|ref|YP_002308195.1| - 0.0021 18.1 0.5 0.0024 17.9 0.5 1.3 1 1 0 1 1 1 1 TGS domain DUF348 PF03990.14 gi|212224959|ref|YP_002308195.1| - 0.0045 16.7 0.1 0.007 16.1 0.1 1.2 1 0 0 1 1 1 1 G5-linked-Ubiquitin-like domain OsmC PF02566.19 gi|212224960|ref|YP_002308196.1| - 5.1e-22 78.2 0.0 7.2e-22 77.8 0.0 1.2 1 0 0 1 1 1 1 OsmC-like protein SIS PF01380.22 gi|212224961|ref|YP_002308197.1| - 0.099 12.5 0.0 0.14 12.0 0.0 1.2 1 0 0 1 1 1 0 SIS domain PQQ PF01011.21 gi|212224961|ref|YP_002308197.1| - 0.1 12.6 0.1 0.18 11.8 0.1 1.3 1 0 0 1 1 1 0 PQQ enzyme repeat tRNA_NucTransf2 PF09249.11 gi|212224963|ref|YP_002308199.1| - 4.1e-39 133.3 0.0 6.8e-39 132.6 0.0 1.4 1 0 0 1 1 1 1 tRNA nucleotidyltransferase, second domain NTP_transf_2 PF01909.23 gi|212224963|ref|YP_002308199.1| - 5e-12 46.0 0.4 2.2e-11 43.9 0.0 2.3 2 0 0 2 2 2 1 Nucleotidyltransferase domain SMODS PF18144.1 gi|212224963|ref|YP_002308199.1| - 0.0012 19.0 0.0 0.0029 17.8 0.0 1.6 1 1 0 1 1 1 1 Second Messenger Oligonucleotide or Dinucleotide Synthetase domain VAPB_antitox PF02697.14 gi|212224963|ref|YP_002308199.1| - 0.02 15.7 0.3 0.076 13.8 0.1 2.1 2 0 0 2 2 2 0 Putative antitoxin MIT_C PF16565.5 gi|212224963|ref|YP_002308199.1| - 0.1 12.6 0.1 0.46 10.5 0.0 2.1 3 0 0 3 3 3 0 Phospholipase D-like domain at C-terminus of MIT LigT_PEase PF02834.16 gi|212224964|ref|YP_002308200.1| - 5.6e-37 125.8 0.2 1.3e-20 73.4 0.2 2.0 2 0 0 2 2 2 2 LigT like Phosphoesterase 2_5_RNA_ligase2 PF13563.6 gi|212224964|ref|YP_002308200.1| - 3.5e-15 56.2 0.0 4.4e-15 55.9 0.0 1.1 1 0 0 1 1 1 1 2'-5' RNA ligase superfamily AKAP7_NLS PF10469.9 gi|212224964|ref|YP_002308200.1| - 1.3e-14 54.6 0.0 1.6e-14 54.3 0.0 1.1 1 0 0 1 1 1 1 AKAP7 2'5' RNA ligase-like domain NIR_SIR_ferr PF03460.17 gi|212224964|ref|YP_002308200.1| - 0.013 15.4 0.0 0.032 14.1 0.0 1.6 1 0 0 1 1 1 0 Nitrite/Sulfite reductase ferredoxin-like half domain DUF1045 PF06299.12 gi|212224964|ref|YP_002308200.1| - 0.013 15.5 0.0 0.027 14.4 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1045) STAS PF01740.21 gi|212224964|ref|YP_002308200.1| - 0.12 12.0 0.2 0.32 10.6 0.2 2.0 1 1 0 1 1 1 0 STAS domain HVSL PF09749.9 gi|212224964|ref|YP_002308200.1| - 0.13 11.8 0.1 0.19 11.2 0.1 1.3 1 1 0 1 1 1 0 Uncharacterised conserved protein PEGA PF08308.11 gi|212224965|ref|YP_002308201.1| - 3.1e-18 65.4 0.3 9.7e-18 63.8 0.3 1.9 1 0 0 1 1 1 1 PEGA domain Peptidase_C1 PF00112.23 gi|212224965|ref|YP_002308201.1| - 3e-09 37.3 1.6 6.9e-09 36.1 1.6 1.6 1 0 0 1 1 1 1 Papain family cysteine protease Peptidase_C1_2 PF03051.15 gi|212224965|ref|YP_002308201.1| - 0.0014 17.5 0.4 0.0048 15.7 0.1 1.8 2 0 0 2 2 2 1 Peptidase C1-like family Pribosyltran PF00156.27 gi|212224966|ref|YP_002308202.1| - 6.4e-27 94.0 0.2 8.1e-27 93.7 0.2 1.0 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 gi|212224966|ref|YP_002308202.1| - 2.6e-05 23.8 0.1 3.4e-05 23.4 0.1 1.1 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.6 gi|212224966|ref|YP_002308202.1| - 0.0069 15.9 0.0 0.0099 15.4 0.0 1.3 1 0 0 1 1 1 1 Phosphoribosyl transferase MctB PF11382.8 gi|212224966|ref|YP_002308202.1| - 0.016 15.0 0.0 0.025 14.3 0.0 1.3 1 0 0 1 1 1 0 Copper transport outer membrane protein, MctB Lar_N PF09861.9 gi|212224966|ref|YP_002308202.1| - 0.018 14.2 0.2 0.025 13.8 0.2 1.2 1 0 0 1 1 1 0 Lactate racemase N-terminal domain Pribosyl_synth PF14572.6 gi|212224966|ref|YP_002308202.1| - 0.069 13.2 2.1 0.092 12.8 1.0 1.6 1 1 1 2 2 2 0 Phosphoribosyl synthetase-associated domain Ribonuc_red_lgC PF02867.15 gi|212224967|ref|YP_002308203.1| - 2.5e-236 785.3 0.0 3.5e-236 784.8 0.0 1.2 1 0 0 1 1 1 1 Ribonucleotide reductase, barrel domain Ribonuc_red_lgN PF00317.21 gi|212224967|ref|YP_002308203.1| - 1.2e-29 102.1 0.3 3.4e-29 100.7 0.3 1.8 1 1 0 1 1 1 1 Ribonucleotide reductase, all-alpha domain ATP-cone PF03477.16 gi|212224967|ref|YP_002308203.1| - 3.5e-21 75.5 1.3 3.5e-21 75.5 1.3 2.6 3 0 0 3 3 3 1 ATP cone domain Rubrerythrin PF02915.17 gi|212224968|ref|YP_002308204.1| - 9.7e-11 42.2 5.7 2.5e-06 27.9 1.8 2.2 2 0 0 2 2 2 2 Rubrerythrin Ferritin PF00210.24 gi|212224968|ref|YP_002308204.1| - 0.0089 16.0 4.6 0.081 12.8 4.6 2.3 1 1 0 1 1 1 1 Ferritin-like domain Ferritin_2 PF13668.6 gi|212224968|ref|YP_002308204.1| - 0.024 14.8 0.1 0.68 10.1 0.0 2.0 1 1 1 2 2 2 0 Ferritin-like domain Hydrolase_6 PF13344.6 gi|212224969|ref|YP_002308205.1| - 1.3e-30 105.5 0.0 1.2e-29 102.4 0.0 2.1 2 0 0 2 2 2 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|212224969|ref|YP_002308205.1| - 5.5e-21 74.4 0.0 1.1e-20 73.4 0.0 1.5 1 0 0 1 1 1 1 HAD-hyrolase-like HAD_2 PF13419.6 gi|212224969|ref|YP_002308205.1| - 1.3e-08 35.2 4.1 0.00037 20.6 0.0 3.7 3 1 1 4 4 4 2 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|212224969|ref|YP_002308205.1| - 1.8e-08 35.0 0.0 0.0028 18.0 0.0 3.2 2 1 1 3 3 3 2 haloacid dehalogenase-like hydrolase PGP_phosphatase PF09419.10 gi|212224969|ref|YP_002308205.1| - 0.0001 22.0 0.0 0.00085 19.0 0.0 2.5 4 0 0 4 4 4 1 Mitochondrial PGP phosphatase Hydrolase_3 PF08282.12 gi|212224969|ref|YP_002308205.1| - 0.02 14.6 0.0 0.03 14.1 0.0 1.2 1 0 0 1 1 1 0 haloacid dehalogenase-like hydrolase PMT_2 PF13231.6 gi|212224970|ref|YP_002308206.1| - 3.9e-19 69.4 15.3 3.9e-19 69.4 15.3 4.0 3 1 0 3 3 3 1 Dolichyl-phosphate-mannose-protein mannosyltransferase TrbC PF04956.13 gi|212224970|ref|YP_002308206.1| - 0.83 9.9 9.2 2.2 8.5 0.8 2.8 2 0 0 2 2 2 0 TrbC/VIRB2 family PMT_2 PF13231.6 gi|212224971|ref|YP_002308207.1| - 2.4e-06 27.8 15.7 2.4e-06 27.8 15.7 3.4 2 1 2 4 4 4 1 Dolichyl-phosphate-mannose-protein mannosyltransferase STT3 PF02516.14 gi|212224971|ref|YP_002308207.1| - 0.00015 20.8 48.6 0.018 14.0 48.6 2.5 1 1 0 1 1 1 1 Oligosaccharyl transferase STT3 subunit DUF962 PF06127.11 gi|212224971|ref|YP_002308207.1| - 0.015 15.3 3.9 0.017 15.2 0.2 3.0 2 1 1 3 3 3 0 Protein of unknown function (DUF962) Glycos_transf_1 PF00534.20 gi|212224972|ref|YP_002308208.1| - 1.3e-34 119.2 0.0 2.2e-34 118.5 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|212224972|ref|YP_002308208.1| - 9e-29 100.6 0.0 1.6e-28 99.8 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|212224972|ref|YP_002308208.1| - 1.4e-18 67.5 0.0 2.4e-18 66.7 0.0 1.4 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|212224972|ref|YP_002308208.1| - 4.1e-08 33.8 0.0 6.5e-08 33.2 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.6 gi|212224972|ref|YP_002308208.1| - 2.9e-05 24.4 0.0 5.8e-05 23.4 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glycos_transf_2 PF00535.26 gi|212224973|ref|YP_002308209.1| - 1.8e-24 86.5 0.0 3e-24 85.7 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|212224973|ref|YP_002308209.1| - 3.2e-05 23.9 0.0 4.7e-05 23.4 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_transf_7N PF13733.6 gi|212224973|ref|YP_002308209.1| - 0.006 16.2 0.0 0.013 15.2 0.0 1.5 1 0 0 1 1 1 1 N-terminal region of glycosyl transferase group 7 DUF373 PF04123.13 gi|212224973|ref|YP_002308209.1| - 0.26 10.7 9.0 0.42 10.0 9.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF373) ATP1G1_PLM_MAT8 PF02038.16 gi|212224973|ref|YP_002308209.1| - 0.31 10.5 2.0 0.85 9.1 2.0 1.7 1 0 0 1 1 1 0 ATP1G1/PLM/MAT8 family DUF2371 PF10177.9 gi|212224973|ref|YP_002308209.1| - 0.32 11.2 1.4 0.66 10.2 1.4 1.5 1 0 0 1 1 1 0 Uncharacterised conserved protein (DUF2371) Glycos_transf_1 PF00534.20 gi|212224974|ref|YP_002308210.1| - 1.4e-34 119.1 0.0 2.1e-34 118.5 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|212224974|ref|YP_002308210.1| - 6.7e-28 97.8 0.0 1.4e-27 96.7 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|212224974|ref|YP_002308210.1| - 5.4e-14 52.5 0.0 1.1e-13 51.6 0.0 1.4 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|212224974|ref|YP_002308210.1| - 1.1e-08 35.7 0.0 4.2e-08 33.8 0.0 1.8 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.6 gi|212224974|ref|YP_002308210.1| - 1.1e-07 32.1 0.0 2.2e-07 31.2 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.6 gi|212224974|ref|YP_002308210.1| - 2.3e-05 24.5 0.3 9e-05 22.5 0.1 2.1 2 1 1 3 3 3 1 Glycosyl transferase 4-like DUF2325 PF10087.9 gi|212224974|ref|YP_002308210.1| - 0.037 14.1 0.0 2.3 8.4 0.0 2.6 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2325) CarboxypepD_reg PF13620.6 gi|212224975|ref|YP_002308211.1| - 6e-08 32.9 1.4 6e-08 32.9 1.4 6.7 8 0 0 8 8 8 1 Carboxypeptidase regulatory-like domain COXG PF06240.13 gi|212224975|ref|YP_002308211.1| - 0.11 12.2 0.6 2.1 8.1 0.1 2.6 2 0 0 2 2 2 0 Carbon monoxide dehydrogenase subunit G (CoxG) Big_1 PF02369.16 gi|212224975|ref|YP_002308211.1| - 0.15 12.1 0.1 0.15 12.1 0.1 7.6 9 0 0 9 9 9 0 Bacterial Ig-like domain (group 1) Big_6 PF17936.1 gi|212224975|ref|YP_002308211.1| - 2 8.8 26.5 0.34 11.2 0.2 7.0 7 0 0 7 7 7 0 Bacterial Ig domain Peptidase_M73 PF12389.8 gi|212224978|ref|YP_002308214.1| - 1.5e-06 28.2 0.2 1.1e-05 25.4 0.2 2.0 1 1 0 1 1 1 1 Camelysin metallo-endopeptidase CARDB PF07705.11 gi|212224978|ref|YP_002308214.1| - 0.039 14.2 0.0 0.081 13.2 0.0 1.6 1 0 0 1 1 1 0 CARDB Ig_mannosidase PF17753.1 gi|212224978|ref|YP_002308214.1| - 0.13 12.0 0.0 0.29 10.9 0.0 1.6 1 0 0 1 1 1 0 Ig-fold domain DUF11 PF01345.18 gi|212224978|ref|YP_002308214.1| - 0.14 12.4 0.0 0.51 10.7 0.0 2.0 1 1 0 1 1 1 0 Domain of unknown function DUF11 DUF1616 PF07760.11 gi|212224979|ref|YP_002308215.1| - 4.6e-92 308.5 0.0 5.2e-92 308.3 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1616) DUF58 PF01882.18 gi|212224981|ref|YP_002308217.1| - 4.4e-16 58.9 0.0 9.8e-16 57.8 0.0 1.6 1 0 0 1 1 1 1 Protein of unknown function DUF58 AAA_3 PF07726.11 gi|212224982|ref|YP_002308218.1| - 3.2e-61 205.0 0.1 5.8e-61 204.1 0.1 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.14 gi|212224982|ref|YP_002308218.1| - 1e-17 64.4 0.0 1.6e-17 63.8 0.0 1.3 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_lid_2 PF17863.1 gi|212224982|ref|YP_002308218.1| - 7.5e-17 60.9 0.0 1.4e-16 60.1 0.0 1.5 1 0 0 1 1 1 1 AAA lid domain MCM PF00493.23 gi|212224982|ref|YP_002308218.1| - 5e-09 35.6 0.0 8.2e-09 34.9 0.0 1.3 1 0 0 1 1 1 1 MCM P-loop domain AAA PF00004.29 gi|212224982|ref|YP_002308218.1| - 4.9e-08 33.5 0.0 1.1e-07 32.3 0.0 1.6 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.12 gi|212224982|ref|YP_002308218.1| - 3.4e-07 30.1 0.1 2.7e-06 27.2 0.1 2.2 1 1 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain Mg_chelatase PF01078.21 gi|212224982|ref|YP_002308218.1| - 6.2e-06 25.7 0.6 0.039 13.3 0.1 2.3 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI Sigma54_activat PF00158.26 gi|212224982|ref|YP_002308218.1| - 0.00078 19.2 0.0 0.0027 17.4 0.0 1.8 1 1 0 1 1 1 1 Sigma-54 interaction domain AAA_2 PF07724.14 gi|212224982|ref|YP_002308218.1| - 0.045 13.9 0.0 0.1 12.7 0.0 1.5 1 0 0 1 1 1 0 AAA domain (Cdc48 subfamily) ATPase PF06745.13 gi|212224982|ref|YP_002308218.1| - 0.069 12.5 0.1 0.14 11.5 0.1 1.5 1 0 0 1 1 1 0 KaiC AAA_33 PF13671.6 gi|212224982|ref|YP_002308218.1| - 0.11 12.7 0.0 0.23 11.6 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|212224982|ref|YP_002308218.1| - 0.16 12.3 0.0 2.7 8.4 0.0 2.2 2 0 0 2 2 2 0 AAA ATPase domain TsaE PF02367.17 gi|212224982|ref|YP_002308218.1| - 0.18 11.8 0.1 0.34 10.9 0.1 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE DUF4350 PF14258.6 gi|212224983|ref|YP_002308219.1| - 6e-10 39.4 0.0 1.7e-09 38.0 0.0 1.8 1 0 0 1 1 1 1 Domain of unknown function (DUF4350) ABC_transp_aux PF09822.9 gi|212224983|ref|YP_002308219.1| - 0.00021 20.9 0.0 0.00035 20.1 0.0 1.3 1 0 0 1 1 1 1 ABC-type uncharacterized transport system Glyco_transf_21 PF13506.6 gi|212224983|ref|YP_002308219.1| - 0.039 13.4 0.0 0.24 10.9 0.0 2.0 2 0 0 2 2 2 0 Glycosyl transferase family 21 DUF4159 PF13709.6 gi|212224983|ref|YP_002308219.1| - 0.065 12.6 0.0 0.11 11.9 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4159) Big_3_5 PF16640.5 gi|212224984|ref|YP_002308220.1| - 5.3e-05 23.3 7.3 0.00034 20.7 0.0 3.3 3 0 0 3 3 3 1 Bacterial Ig-like domain (group 3) DUF4129 PF13559.6 gi|212224984|ref|YP_002308220.1| - 0.0016 18.7 0.1 0.0035 17.6 0.1 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF4129) CarboxypepD_reg PF13620.6 gi|212224984|ref|YP_002308220.1| - 0.006 16.8 8.2 6.2 7.2 0.1 3.5 3 0 0 3 3 3 3 Carboxypeptidase regulatory-like domain Filamin PF00630.19 gi|212224984|ref|YP_002308220.1| - 0.019 15.8 0.0 1.4 9.7 0.0 2.4 2 0 0 2 2 2 0 Filamin/ABP280 repeat CooC_C PF15976.5 gi|212224984|ref|YP_002308220.1| - 0.15 12.1 0.1 1.8 8.7 0.0 2.6 3 0 0 3 3 3 0 CS1-pili formation C-terminal DUF3185 PF11381.8 gi|212224985|ref|YP_002308221.1| - 0.056 13.5 3.2 0.056 13.5 3.2 2.6 1 1 1 2 2 2 0 Protein of unknown function (DUF3185) Epimerase PF01370.21 gi|212224987|ref|YP_002308223.1| - 1.6e-58 198.0 0.0 2e-58 197.7 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|212224987|ref|YP_002308223.1| - 2.6e-53 181.6 0.0 6.5e-53 180.3 0.0 1.5 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase 3Beta_HSD PF01073.19 gi|212224987|ref|YP_002308223.1| - 3.3e-27 95.2 0.0 4.2e-27 94.9 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.17 gi|212224987|ref|YP_002308223.1| - 2.1e-19 69.7 0.0 2.8e-19 69.3 0.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain Polysacc_synt_2 PF02719.15 gi|212224987|ref|YP_002308223.1| - 7e-18 64.8 0.0 4.5e-17 62.1 0.0 1.9 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_10 PF13460.6 gi|212224987|ref|YP_002308223.1| - 4.1e-13 49.6 0.0 5.9e-13 49.1 0.0 1.2 1 0 0 1 1 1 1 NAD(P)H-binding NAD_binding_4 PF07993.12 gi|212224987|ref|YP_002308223.1| - 1.5e-12 47.3 0.1 1.1e-10 41.1 0.1 2.4 1 1 0 1 1 1 1 Male sterility protein NmrA PF05368.13 gi|212224987|ref|YP_002308223.1| - 1.2e-11 44.6 0.0 3.1e-09 36.8 0.0 2.2 2 0 0 2 2 2 2 NmrA-like family adh_short PF00106.25 gi|212224987|ref|YP_002308223.1| - 6.7e-08 32.2 0.1 5.2e-07 29.3 0.0 2.1 2 0 0 2 2 2 1 short chain dehydrogenase Ldh_1_N PF00056.23 gi|212224987|ref|YP_002308223.1| - 0.0094 16.1 0.0 0.016 15.3 0.0 1.3 1 0 0 1 1 1 1 lactate/malate dehydrogenase, NAD binding domain TrkA_N PF02254.18 gi|212224987|ref|YP_002308223.1| - 0.011 16.0 0.0 0.021 15.0 0.0 1.5 1 1 0 1 1 1 0 TrkA-N domain KR PF08659.10 gi|212224987|ref|YP_002308223.1| - 0.014 15.3 0.2 0.093 12.6 0.2 2.1 1 1 0 1 1 1 0 KR domain Sacchrp_dh_NADP PF03435.18 gi|212224987|ref|YP_002308223.1| - 0.059 13.6 0.0 0.14 12.4 0.0 1.6 2 0 0 2 2 2 0 Saccharopine dehydrogenase NADP binding domain AlaDh_PNT_C PF01262.21 gi|212224987|ref|YP_002308223.1| - 0.093 12.0 0.0 0.13 11.6 0.0 1.2 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Glyco_transf_4 PF13439.6 gi|212224987|ref|YP_002308223.1| - 0.12 12.3 0.0 15 5.6 0.0 2.7 3 0 0 3 3 3 0 Glycosyltransferase Family 4 NTP_transferase PF00483.23 gi|212224988|ref|YP_002308224.1| - 4.1e-39 134.6 0.0 4.9e-39 134.4 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|212224988|ref|YP_002308224.1| - 2e-10 41.2 0.0 2.9e-10 40.7 0.0 1.3 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep PF00132.24 gi|212224988|ref|YP_002308224.1| - 1.4e-05 24.6 1.5 0.0049 16.5 0.8 3.6 3 1 1 4 4 4 2 Bacterial transferase hexapeptide (six repeats) Fucokinase PF07959.12 gi|212224988|ref|YP_002308224.1| - 0.012 14.6 0.0 0.41 9.5 0.0 2.3 2 1 0 2 2 2 0 L-fucokinase AAA_14 PF13173.6 gi|212224989|ref|YP_002308225.1| - 5.4e-06 26.5 0.0 5.6e-06 26.4 0.0 1.1 1 0 0 1 1 1 1 AAA domain ATPase_2 PF01637.18 gi|212224989|ref|YP_002308225.1| - 6e-05 23.1 0.0 6.3e-05 23.0 0.0 1.0 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_16 PF13191.6 gi|212224989|ref|YP_002308225.1| - 0.0015 19.0 0.0 0.0016 18.8 0.0 1.1 1 0 0 1 1 1 1 AAA ATPase domain T2SSE PF00437.20 gi|212224989|ref|YP_002308225.1| - 0.0055 15.8 0.0 0.0055 15.8 0.0 1.1 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_22 PF13401.6 gi|212224989|ref|YP_002308225.1| - 0.0085 16.4 0.0 0.009 16.3 0.0 1.1 1 0 0 1 1 1 1 AAA domain AAA_23 PF13476.6 gi|212224989|ref|YP_002308225.1| - 0.013 16.0 0.0 0.013 16.0 0.0 1.2 1 0 0 1 1 1 0 AAA domain Roc PF08477.13 gi|212224989|ref|YP_002308225.1| - 0.025 14.8 0.0 0.03 14.5 0.0 1.1 1 0 0 1 1 1 0 Ras of Complex, Roc, domain of DAPkinase RNA12 PF10443.9 gi|212224989|ref|YP_002308225.1| - 0.027 13.2 0.0 0.03 13.1 0.0 1.0 1 0 0 1 1 1 0 RNA12 protein NTPase_1 PF03266.15 gi|212224989|ref|YP_002308225.1| - 0.047 13.6 0.0 0.051 13.5 0.0 1.3 1 0 0 1 1 1 0 NTPase DUF463 PF04317.12 gi|212224989|ref|YP_002308225.1| - 0.06 12.3 0.0 0.064 12.2 0.0 1.0 1 0 0 1 1 1 0 YcjX-like family, DUF463 NB-ARC PF00931.22 gi|212224989|ref|YP_002308225.1| - 0.067 12.4 0.0 0.069 12.3 0.0 1.0 1 0 0 1 1 1 0 NB-ARC domain AAA-ATPase_like PF09820.9 gi|212224989|ref|YP_002308225.1| - 0.1 12.0 0.0 0.11 11.9 0.0 1.1 1 0 0 1 1 1 0 Predicted AAA-ATPase AAA_7 PF12775.7 gi|212224989|ref|YP_002308225.1| - 0.13 11.8 0.0 0.13 11.7 0.0 1.0 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_24 PF13479.6 gi|212224989|ref|YP_002308225.1| - 0.13 12.0 0.0 0.15 11.8 0.0 1.3 1 0 0 1 1 1 0 AAA domain YAcAr PF10686.9 gi|212224989|ref|YP_002308225.1| - 0.18 11.8 0.0 0.23 11.4 0.0 1.2 1 0 0 1 1 1 0 YspA, cpYpsA-related SLOG family AAA_14 PF13173.6 gi|212224990|ref|YP_002308226.1| - 0.0095 16.0 0.0 0.0097 15.9 0.0 1.1 1 0 0 1 1 1 1 AAA domain ATPase_2 PF01637.18 gi|212224990|ref|YP_002308226.1| - 0.022 14.7 0.0 0.024 14.5 0.0 1.0 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea Nudix_N PF12535.8 gi|212224991|ref|YP_002308227.1| - 0.029 14.0 0.1 0.047 13.3 0.1 1.4 1 0 0 1 1 1 0 Hydrolase of X-linked nucleoside diphosphate N terminal DUF4777 PF16007.5 gi|212224991|ref|YP_002308227.1| - 0.035 14.4 0.1 0.21 11.9 0.1 2.2 2 1 0 2 2 2 0 Domain of unknown function (DUF4777) NTP_transferase PF00483.23 gi|212224993|ref|YP_002308229.1| - 1.5e-50 172.1 0.0 1.8e-50 171.9 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase Hexapep PF00132.24 gi|212224993|ref|YP_002308229.1| - 2.9e-12 45.8 19.8 1.7e-06 27.5 4.9 4.4 2 2 2 4 4 4 3 Bacterial transferase hexapeptide (six repeats) NTP_transf_3 PF12804.7 gi|212224993|ref|YP_002308229.1| - 6.9e-09 36.3 0.0 9.8e-09 35.8 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep_2 PF14602.6 gi|212224993|ref|YP_002308229.1| - 4.6e-05 23.1 3.3 4.6e-05 23.1 3.3 4.3 3 2 2 5 5 5 2 Hexapeptide repeat of succinyl-transferase DUF4954 PF16314.5 gi|212224993|ref|YP_002308229.1| - 0.0026 16.0 1.2 0.023 12.9 1.2 1.9 1 1 0 1 1 1 1 Domain of unknown function (DUF4954) Fucokinase PF07959.12 gi|212224993|ref|YP_002308229.1| - 0.01 14.8 0.1 0.014 14.4 0.1 1.2 1 0 0 1 1 1 0 L-fucokinase Lyase_8_N PF08124.11 gi|212224993|ref|YP_002308229.1| - 0.07 12.0 0.2 0.1 11.5 0.2 1.1 1 0 0 1 1 1 0 Polysaccharide lyase family 8, N terminal alpha-helical domain CTP_transf_3 PF02348.19 gi|212224993|ref|YP_002308229.1| - 0.2 11.5 0.0 0.33 10.8 0.0 1.3 1 0 0 1 1 1 0 Cytidylyltransferase GDP_Man_Dehyd PF16363.5 gi|212224994|ref|YP_002308230.1| - 5.8e-84 282.3 0.0 7.2e-84 282.0 0.0 1.1 1 0 0 1 1 1 1 GDP-mannose 4,6 dehydratase Epimerase PF01370.21 gi|212224994|ref|YP_002308230.1| - 3.3e-64 216.6 0.0 4.1e-64 216.3 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.19 gi|212224994|ref|YP_002308230.1| - 1.5e-20 73.3 0.0 2.1e-20 72.9 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.17 gi|212224994|ref|YP_002308230.1| - 9.3e-18 64.3 0.0 2e-17 63.2 0.0 1.5 1 1 0 1 1 1 1 RmlD substrate binding domain NAD_binding_4 PF07993.12 gi|212224994|ref|YP_002308230.1| - 3.6e-13 49.3 0.0 1.8e-11 43.7 0.0 2.6 1 1 0 1 1 1 1 Male sterility protein Polysacc_synt_2 PF02719.15 gi|212224994|ref|YP_002308230.1| - 4.2e-13 49.1 0.0 2.7e-12 46.4 0.0 2.0 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_10 PF13460.6 gi|212224994|ref|YP_002308230.1| - 4e-08 33.4 0.0 6.9e-08 32.6 0.0 1.4 1 0 0 1 1 1 1 NAD(P)H-binding NmrA PF05368.13 gi|212224994|ref|YP_002308230.1| - 0.0037 16.9 0.0 0.0063 16.1 0.0 1.4 1 0 0 1 1 1 1 NmrA-like family Sacchrp_dh_NADP PF03435.18 gi|212224994|ref|YP_002308230.1| - 0.0045 17.2 0.0 0.0085 16.4 0.0 1.4 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain adh_short PF00106.25 gi|212224994|ref|YP_002308230.1| - 0.01 15.3 0.0 0.05 13.1 0.0 1.9 1 1 0 1 1 1 0 short chain dehydrogenase KR PF08659.10 gi|212224994|ref|YP_002308230.1| - 0.046 13.6 0.0 0.073 13.0 0.0 1.4 1 0 0 1 1 1 0 KR domain PPDK_N PF01326.19 gi|212224995|ref|YP_002308231.1| - 0.0042 16.4 0.8 0.0049 16.2 0.8 1.0 1 0 0 1 1 1 1 Pyruvate phosphate dikinase, PEP/pyruvate binding domain EnY2 PF10163.9 gi|212224995|ref|YP_002308231.1| - 0.032 14.6 0.2 0.065 13.6 0.2 1.5 1 1 1 2 2 2 0 Transcription factor e(y)2 PIN PF01850.21 gi|212224996|ref|YP_002308232.1| - 3.8e-08 33.9 0.0 4.9e-06 27.0 0.0 2.1 1 1 1 2 2 2 2 PIN domain DUF5615 PF18480.1 gi|212224996|ref|YP_002308232.1| - 0.0018 18.0 0.0 0.003 17.3 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF5615) DUF2281 PF10047.9 gi|212224997|ref|YP_002308233.1| - 9.2e-19 67.9 0.2 1.1e-18 67.7 0.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF2281) Gp49 PF05973.14 gi|212224997|ref|YP_002308233.1| - 0.011 15.9 0.1 0.012 15.7 0.1 1.1 1 0 0 1 1 1 0 Phage derived protein Gp49-like (DUF891) PIN PF01850.21 gi|212224998|ref|YP_002308234.1| - 9.3e-18 64.9 0.1 1e-17 64.8 0.1 1.0 1 0 0 1 1 1 1 PIN domain dTDP_sugar_isom PF00908.17 gi|212224999|ref|YP_002308235.1| - 9.9e-78 259.6 0.0 1.1e-77 259.5 0.0 1.0 1 0 0 1 1 1 1 dTDP-4-dehydrorhamnose 3,5-epimerase PIN PF01850.21 gi|212225001|ref|YP_002308237.1| - 3.6e-20 72.7 0.5 4.4e-20 72.4 0.5 1.1 1 0 0 1 1 1 1 PIN domain RmlD_sub_bind PF04321.17 gi|212225002|ref|YP_002308238.1| - 3.7e-86 288.8 0.0 4.5e-86 288.5 0.0 1.0 1 0 0 1 1 1 1 RmlD substrate binding domain Epimerase PF01370.21 gi|212225002|ref|YP_002308238.1| - 1.5e-24 86.8 0.0 2.1e-24 86.3 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|212225002|ref|YP_002308238.1| - 7.2e-15 55.2 0.0 9.7e-15 54.8 0.0 1.4 1 0 0 1 1 1 1 GDP-mannose 4,6 dehydratase Polysacc_synt_2 PF02719.15 gi|212225002|ref|YP_002308238.1| - 3.7e-10 39.4 1.7 3.1e-09 36.4 0.5 2.5 1 1 1 2 2 2 1 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.12 gi|212225002|ref|YP_002308238.1| - 8.8e-08 31.6 0.1 1.9e-07 30.5 0.1 1.6 1 1 0 1 1 1 1 Male sterility protein Semialdhyde_dh PF01118.24 gi|212225002|ref|YP_002308238.1| - 6e-05 23.5 0.0 0.00023 21.6 0.0 2.0 2 1 0 2 2 2 1 Semialdehyde dehydrogenase, NAD binding domain DapB_N PF01113.20 gi|212225002|ref|YP_002308238.1| - 0.0025 17.9 0.0 0.0082 16.3 0.0 1.8 2 0 0 2 2 2 1 Dihydrodipicolinate reductase, N-terminus Polysacc_synt PF01943.17 gi|212225003|ref|YP_002308239.1| - 2.7e-42 145.1 32.5 2.7e-42 145.1 32.5 2.4 2 1 0 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt_3 PF13440.6 gi|212225003|ref|YP_002308239.1| - 5.4e-18 65.2 17.4 5.4e-18 65.2 17.4 2.3 1 1 1 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt_C PF14667.6 gi|212225003|ref|YP_002308239.1| - 9.1e-17 61.5 19.2 9.1e-17 61.5 19.2 4.4 3 2 1 4 4 4 1 Polysaccharide biosynthesis C-terminal domain MatE PF01554.18 gi|212225003|ref|YP_002308239.1| - 2.4e-10 40.3 9.9 2.4e-10 40.3 9.9 3.7 3 1 0 3 3 3 2 MatE MurJ PF03023.14 gi|212225003|ref|YP_002308239.1| - 8.1e-05 21.4 39.6 8.1e-05 21.4 39.6 1.6 1 1 0 1 1 1 1 Lipid II flippase MurJ Methyltransf_23 PF13489.6 gi|212225004|ref|YP_002308240.1| - 1.5e-12 47.7 0.0 2.2e-12 47.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|212225004|ref|YP_002308240.1| - 3.3e-05 23.7 0.0 4.3e-05 23.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|212225004|ref|YP_002308240.1| - 0.00089 20.0 0.0 0.0017 19.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|212225004|ref|YP_002308240.1| - 0.0013 19.4 0.0 0.0025 18.4 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_PK PF05891.12 gi|212225004|ref|YP_002308240.1| - 0.057 12.9 0.0 0.088 12.3 0.0 1.3 1 0 0 1 1 1 0 AdoMet dependent proline di-methyltransferase Methyltransf_25 PF13649.6 gi|212225004|ref|YP_002308240.1| - 0.14 12.9 0.0 0.3 11.8 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain Glycos_transf_2 PF00535.26 gi|212225005|ref|YP_002308241.1| - 8.6e-10 38.7 0.2 1e-09 38.4 0.2 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|212225005|ref|YP_002308241.1| - 5.3e-05 23.2 0.0 7.1e-05 22.8 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glycos_transf_1 PF00534.20 gi|212225007|ref|YP_002308243.1| - 3.9e-37 127.4 0.0 7.6e-37 126.5 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|212225007|ref|YP_002308243.1| - 1.7e-27 96.5 0.1 6.8e-27 94.5 0.0 1.9 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|212225007|ref|YP_002308243.1| - 2.2e-17 63.6 0.1 4.2e-17 62.6 0.0 1.5 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|212225007|ref|YP_002308243.1| - 3.9e-06 27.4 0.0 8.1e-06 26.4 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.6 gi|212225007|ref|YP_002308243.1| - 9.6e-05 22.7 0.0 0.00019 21.8 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 NYN PF01936.18 gi|212225007|ref|YP_002308243.1| - 0.016 15.7 0.0 0.053 14.0 0.0 2.0 2 1 0 2 2 2 0 NYN domain NanE PF04131.14 gi|212225007|ref|YP_002308243.1| - 0.051 12.8 0.4 0.084 12.1 0.4 1.3 1 0 0 1 1 1 0 Putative N-acetylmannosamine-6-phosphate epimerase Thymidylate_kin PF02223.17 gi|212225008|ref|YP_002308244.1| - 5.3e-11 42.5 1.3 0.00013 21.8 0.0 2.2 2 0 0 2 2 2 2 Thymidylate kinase AAA_18 PF13238.6 gi|212225008|ref|YP_002308244.1| - 0.00016 22.2 0.1 0.0035 17.9 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.6 gi|212225008|ref|YP_002308244.1| - 0.00039 20.7 0.0 0.0011 19.2 0.0 1.8 2 1 0 2 2 2 1 AAA domain AAA PF00004.29 gi|212225008|ref|YP_002308244.1| - 0.0014 19.1 0.1 0.0055 17.1 0.0 1.9 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_19 PF13245.6 gi|212225008|ref|YP_002308244.1| - 0.0019 18.6 0.4 0.017 15.4 0.4 2.0 1 1 0 1 1 1 1 AAA domain AAA_24 PF13479.6 gi|212225008|ref|YP_002308244.1| - 0.0021 17.8 0.2 0.0033 17.2 0.2 1.8 1 1 0 1 1 1 1 AAA domain NACHT PF05729.12 gi|212225008|ref|YP_002308244.1| - 0.0076 16.2 0.2 0.019 14.9 0.0 1.8 2 1 1 3 3 3 1 NACHT domain AAA_28 PF13521.6 gi|212225008|ref|YP_002308244.1| - 0.0081 16.4 0.1 0.027 14.7 0.0 1.8 2 1 0 2 2 2 1 AAA domain AAA_33 PF13671.6 gi|212225008|ref|YP_002308244.1| - 0.024 14.8 0.0 0.07 13.3 0.0 1.7 2 0 0 2 2 2 0 AAA domain MobB PF03205.14 gi|212225008|ref|YP_002308244.1| - 0.028 14.3 0.0 0.05 13.5 0.0 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B ATPase_2 PF01637.18 gi|212225008|ref|YP_002308244.1| - 0.029 14.3 0.1 0.084 12.8 0.0 1.7 2 0 0 2 2 2 0 ATPase domain predominantly from Archaea AAA_5 PF07728.14 gi|212225008|ref|YP_002308244.1| - 0.037 14.0 0.0 0.093 12.7 0.0 1.7 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) NTPase_1 PF03266.15 gi|212225008|ref|YP_002308244.1| - 0.038 13.9 0.1 0.084 12.8 0.0 1.6 2 0 0 2 2 2 0 NTPase RNA_helicase PF00910.22 gi|212225008|ref|YP_002308244.1| - 0.042 14.2 0.0 0.085 13.2 0.0 1.5 1 0 0 1 1 1 0 RNA helicase dNK PF01712.19 gi|212225008|ref|YP_002308244.1| - 0.044 13.6 0.2 0.2 11.5 0.2 2.3 1 1 0 1 1 1 0 Deoxynucleoside kinase ABC_tran PF00005.27 gi|212225008|ref|YP_002308244.1| - 0.05 14.1 0.0 0.15 12.6 0.0 1.7 2 0 0 2 2 2 0 ABC transporter AAA_16 PF13191.6 gi|212225008|ref|YP_002308244.1| - 0.054 13.9 0.0 0.11 12.9 0.0 1.5 2 0 0 2 2 2 0 AAA ATPase domain DUF2682 PF10909.8 gi|212225008|ref|YP_002308244.1| - 0.095 13.2 1.3 0.2 12.2 0.4 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF2682) AAA_17 PF13207.6 gi|212225008|ref|YP_002308244.1| - 0.12 12.8 0.2 0.42 11.0 0.0 1.9 2 0 0 2 2 2 0 AAA domain TrwB_AAD_bind PF10412.9 gi|212225008|ref|YP_002308244.1| - 0.13 11.1 0.0 0.2 10.5 0.0 1.2 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain AAA_23 PF13476.6 gi|212225008|ref|YP_002308244.1| - 0.16 12.4 1.3 3.3 8.2 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_14 PF13173.6 gi|212225008|ref|YP_002308244.1| - 0.17 12.0 1.3 2.5 8.1 0.0 2.6 2 1 1 3 3 3 0 AAA domain AAA_30 PF13604.6 gi|212225008|ref|YP_002308244.1| - 0.22 11.2 0.0 0.31 10.7 0.0 1.3 1 0 0 1 1 1 0 AAA domain Glyco_trans_1_4 PF13692.6 gi|212225009|ref|YP_002308245.1| - 5.7e-23 81.8 0.1 8.7e-23 81.2 0.1 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glycos_transf_1 PF00534.20 gi|212225009|ref|YP_002308245.1| - 2.5e-22 79.2 0.2 4.6e-22 78.4 0.2 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|212225009|ref|YP_002308245.1| - 3.5e-13 49.9 0.0 1.7e-12 47.7 0.0 2.1 1 1 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|212225009|ref|YP_002308245.1| - 1.1e-07 32.5 0.0 5.2e-06 27.0 0.0 2.5 1 1 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.6 gi|212225009|ref|YP_002308245.1| - 2.6e-06 27.7 0.0 7.5e-06 26.3 0.0 1.8 1 0 0 1 1 1 1 Glycosyl transferases group 1 Epimerase_2 PF02350.19 gi|212225009|ref|YP_002308245.1| - 0.00051 19.0 0.0 0.00095 18.1 0.0 1.3 1 0 0 1 1 1 1 UDP-N-acetylglucosamine 2-epimerase DUF563 PF04577.14 gi|212225009|ref|YP_002308245.1| - 0.00059 20.0 0.8 0.0016 18.6 0.8 1.7 1 1 0 1 1 1 1 Protein of unknown function (DUF563) Glyco_trans_4_2 PF13477.6 gi|212225009|ref|YP_002308245.1| - 0.0051 16.8 0.0 0.034 14.2 0.0 2.3 2 0 0 2 2 2 1 Glycosyl transferase 4-like Glycos_transf_1 PF00534.20 gi|212225010|ref|YP_002308246.1| - 1.4e-42 145.1 0.0 2.3e-42 144.4 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|212225010|ref|YP_002308246.1| - 6e-32 110.9 0.0 1.2e-31 109.9 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|212225010|ref|YP_002308246.1| - 7.4e-25 87.9 0.1 2.3e-23 83.0 0.2 2.3 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|212225010|ref|YP_002308246.1| - 1e-17 65.1 0.0 2.3e-17 63.9 0.0 1.6 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.6 gi|212225010|ref|YP_002308246.1| - 7.1e-14 52.0 0.0 1.2e-13 51.2 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_5 PF08323.11 gi|212225010|ref|YP_002308246.1| - 3.5e-08 33.4 0.1 0.0006 19.6 0.2 2.3 1 1 1 2 2 2 2 Starch synthase catalytic domain Glyco_trans_4_2 PF13477.6 gi|212225010|ref|YP_002308246.1| - 4.9e-06 26.6 0.8 1.1e-05 25.5 0.8 1.6 1 1 0 1 1 1 1 Glycosyl transferase 4-like Glyco_hydro_19 PF00182.19 gi|212225010|ref|YP_002308246.1| - 0.18 11.7 0.0 0.3 11.0 0.0 1.3 1 0 0 1 1 1 0 Chitinase class I Glyco_tran_28_C PF04101.16 gi|212225011|ref|YP_002308247.1| - 1.1e-20 74.3 0.0 1.4e-20 74.0 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase family 28 C-terminal domain Glycos_transf_1 PF00534.20 gi|212225011|ref|YP_002308247.1| - 3.1e-05 23.6 0.1 0.00012 21.7 0.1 1.8 1 1 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|212225011|ref|YP_002308247.1| - 0.00063 20.2 0.0 0.00092 19.6 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Alpha-amyl_C2 PF07821.12 gi|212225011|ref|YP_002308247.1| - 0.063 13.5 0.0 0.12 12.7 0.0 1.4 1 0 0 1 1 1 0 Alpha-amylase C-terminal beta-sheet domain Alg14 PF08660.11 gi|212225012|ref|YP_002308248.1| - 2.5e-19 69.9 1.5 3.7e-17 62.8 0.1 2.1 1 1 1 2 2 2 2 Oligosaccharide biosynthesis protein Alg14 like Glyco_transf_28 PF03033.20 gi|212225012|ref|YP_002308248.1| - 3.3e-06 27.2 0.2 1.3e-05 25.3 0.2 1.8 1 1 0 1 1 1 1 Glycosyltransferase family 28 N-terminal domain Glyco_trans_4_2 PF13477.6 gi|212225012|ref|YP_002308248.1| - 0.0042 17.1 0.1 0.0048 16.9 0.1 1.2 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glyco_transf_4 PF13439.6 gi|212225012|ref|YP_002308248.1| - 0.057 13.4 0.0 0.079 13.0 0.0 1.2 1 0 0 1 1 1 0 Glycosyltransferase Family 4 Glycos_transf_2 PF00535.26 gi|212225013|ref|YP_002308249.1| - 1.5e-32 112.8 0.0 2.1e-32 112.3 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|212225013|ref|YP_002308249.1| - 6.9e-25 88.3 0.0 1.1e-24 87.6 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.9 gi|212225013|ref|YP_002308249.1| - 3.9e-10 39.7 0.0 2.4e-09 37.1 0.0 1.9 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_transf_21 PF13506.6 gi|212225013|ref|YP_002308249.1| - 4e-07 29.7 0.0 6.4e-07 29.0 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 21 Glyco_trans_2_3 PF13632.6 gi|212225013|ref|YP_002308249.1| - 1.5e-05 25.0 0.0 3.3e-05 23.9 0.0 1.6 1 1 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_transf_7C PF02709.14 gi|212225013|ref|YP_002308249.1| - 0.00011 21.8 0.0 0.00021 20.9 0.0 1.4 1 0 0 1 1 1 1 N-terminal domain of galactosyltransferase Glyco_tranf_2_4 PF13704.6 gi|212225013|ref|YP_002308249.1| - 0.0016 18.9 0.0 0.0031 18.0 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase family 2 GlcNAc PF11397.8 gi|212225013|ref|YP_002308249.1| - 0.072 12.5 0.0 0.1 12.0 0.0 1.2 1 0 0 1 1 1 0 Glycosyltransferase (GlcNAc) Glycos_transf_2 PF00535.26 gi|212225014|ref|YP_002308250.1| - 2.9e-27 95.6 0.0 3.7e-27 95.2 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|212225014|ref|YP_002308250.1| - 1.6e-07 31.4 0.0 2.2e-07 31.0 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 gi|212225014|ref|YP_002308250.1| - 0.0041 17.6 0.0 0.0075 16.8 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 PGM_PMM_II PF02879.16 gi|212225014|ref|YP_002308250.1| - 0.019 15.6 0.0 0.065 13.9 0.0 1.9 2 0 0 2 2 2 0 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II Glyco_transf_21 PF13506.6 gi|212225014|ref|YP_002308250.1| - 0.028 13.9 0.0 0.039 13.4 0.0 1.2 1 0 0 1 1 1 0 Glycosyl transferase family 21 AbiEi_4 PF13338.6 gi|212225015|ref|YP_002308251.1| - 3e-05 24.1 0.0 6.3e-05 23.0 0.0 1.5 1 0 0 1 1 1 1 Transcriptional regulator, AbiEi antitoxin AbiEi_1 PF09407.10 gi|212225015|ref|YP_002308251.1| - 3.1e-05 24.3 0.0 6.6e-05 23.3 0.0 1.5 1 0 0 1 1 1 1 AbiEi antitoxin C-terminal domain MotA_activ PF09114.10 gi|212225015|ref|YP_002308251.1| - 0.0029 17.7 0.0 0.0049 17.0 0.0 1.3 1 0 0 1 1 1 1 Transcription factor MotA, activation domain Penicillinase_R PF03965.16 gi|212225015|ref|YP_002308251.1| - 0.0031 17.8 0.0 0.0058 17.0 0.0 1.5 1 0 0 1 1 1 1 Penicillinase repressor DUF505 PF04458.12 gi|212225015|ref|YP_002308251.1| - 0.0063 14.9 0.0 0.0083 14.5 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF505) HTH_46 PF15977.5 gi|212225015|ref|YP_002308251.1| - 0.032 14.3 0.1 0.078 13.0 0.1 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA binding TrmB PF01978.19 gi|212225015|ref|YP_002308251.1| - 0.083 12.8 0.0 0.19 11.6 0.0 1.7 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_Crp_2 PF13545.6 gi|212225015|ref|YP_002308251.1| - 0.13 12.2 0.0 0.28 11.2 0.0 1.5 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain AbiEii PF08843.11 gi|212225016|ref|YP_002308252.1| - 1e-27 97.6 0.2 1.7e-27 96.9 0.2 1.2 1 0 0 1 1 1 1 Nucleotidyl transferase AbiEii toxin, Type IV TA system DUF1610 PF07754.11 gi|212225017|ref|YP_002308253.1| - 2.7e-14 52.8 6.0 2.7e-14 52.8 6.0 2.5 3 0 0 3 3 2 2 Domain of unknown function (DUF1610) zinc_ribbon_2 PF13240.6 gi|212225017|ref|YP_002308253.1| - 5.8e-05 22.7 19.7 9.3e-05 22.0 4.4 3.7 3 1 0 3 3 3 2 zinc-ribbon domain DZR PF12773.7 gi|212225017|ref|YP_002308253.1| - 0.00063 19.7 11.7 0.0078 16.2 11.7 2.1 1 1 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.6 gi|212225017|ref|YP_002308253.1| - 0.0033 16.8 17.1 0.13 11.7 0.2 3.5 4 0 0 4 4 3 3 zinc-ribbon domain PhnA_Zn_Ribbon PF08274.12 gi|212225017|ref|YP_002308253.1| - 0.004 17.1 16.4 0.018 14.9 0.5 3.9 3 1 1 4 4 4 1 PhnA Zinc-Ribbon HypA PF01155.19 gi|212225017|ref|YP_002308253.1| - 0.0071 16.3 10.7 0.0081 16.2 1.2 2.0 1 1 1 2 2 2 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA OrfB_Zn_ribbon PF07282.11 gi|212225017|ref|YP_002308253.1| - 0.0076 16.2 1.9 0.0076 16.2 1.9 2.7 1 1 2 3 3 3 1 Putative transposase DNA-binding domain zf-C2HC5 PF06221.13 gi|212225017|ref|YP_002308253.1| - 0.014 15.4 4.8 0.014 15.4 4.8 2.2 1 1 1 2 2 2 0 Putative zinc finger motif, C2HC5-type DUF1272 PF06906.11 gi|212225017|ref|YP_002308253.1| - 0.018 15.2 10.3 0.16 12.1 3.3 2.7 1 1 1 2 2 2 0 Protein of unknown function (DUF1272) zf-NADH-PPase PF09297.11 gi|212225017|ref|YP_002308253.1| - 0.024 14.3 11.8 0.056 13.1 3.2 3.2 3 1 0 3 3 3 0 NADH pyrophosphatase zinc ribbon domain zf-UDP PF14569.6 gi|212225017|ref|YP_002308253.1| - 0.025 14.7 5.0 0.028 14.5 5.0 1.0 1 0 0 1 1 1 0 Zinc-binding RING-finger zf-CHY PF05495.12 gi|212225017|ref|YP_002308253.1| - 0.025 15.0 8.2 0.046 14.2 8.2 1.4 1 1 0 1 1 1 0 CHY zinc finger YhfH PF14149.6 gi|212225017|ref|YP_002308253.1| - 0.03 14.3 15.5 0.76 9.8 0.5 3.3 2 1 1 3 3 3 0 YhfH-like protein Zn-ribbon_8 PF09723.10 gi|212225017|ref|YP_002308253.1| - 0.03 14.4 3.6 0.03 14.4 3.6 3.1 1 1 1 2 2 2 0 Zinc ribbon domain Rubredoxin_2 PF18073.1 gi|212225017|ref|YP_002308253.1| - 0.037 13.8 17.2 3.4 7.5 6.7 3.9 3 1 0 3 3 3 0 Rubredoxin metal binding domain HscB_4_cys PF18256.1 gi|212225017|ref|YP_002308253.1| - 0.037 13.8 1.0 0.037 13.8 1.0 3.1 2 1 1 3 3 3 0 Co-chaperone HscB tetracysteine metal binding motif zinc_ribbon_10 PF10058.9 gi|212225017|ref|YP_002308253.1| - 0.053 13.2 16.0 2.2 8.1 0.2 3.8 1 1 2 3 3 3 0 Predicted integral membrane zinc-ribbon metal-binding protein zf_UBZ PF18439.1 gi|212225017|ref|YP_002308253.1| - 0.061 12.9 16.8 0.38 10.4 0.5 3.7 2 1 2 4 4 4 0 Ubiquitin-Binding Zinc Finger Sgf11 PF08209.11 gi|212225017|ref|YP_002308253.1| - 0.068 12.7 12.6 0.14 11.8 0.2 3.7 3 1 1 4 4 4 0 Sgf11 (transcriptional regulation protein) zinc-ribbons_6 PF07191.12 gi|212225017|ref|YP_002308253.1| - 0.078 13.0 10.2 1.3 9.0 10.2 2.1 1 1 0 1 1 1 0 zinc-ribbons zf-ACC PF17848.1 gi|212225017|ref|YP_002308253.1| - 0.095 12.8 18.1 2.9 8.0 0.6 4.0 3 1 0 3 3 3 0 Acetyl-coA carboxylase zinc finger domain C1_2 PF03107.16 gi|212225017|ref|YP_002308253.1| - 0.12 12.7 9.0 3.3 8.1 4.7 2.2 1 1 1 2 2 2 0 C1 domain zf-MYND PF01753.18 gi|212225017|ref|YP_002308253.1| - 0.15 12.2 7.6 0.21 11.7 0.8 2.3 1 1 1 2 2 2 0 MYND finger zf-dskA_traR PF01258.17 gi|212225017|ref|YP_002308253.1| - 0.17 11.9 12.2 0.79 9.7 0.2 3.7 4 0 0 4 4 4 0 Prokaryotic dksA/traR C4-type zinc finger zf-tcix PF14952.6 gi|212225017|ref|YP_002308253.1| - 0.18 11.5 14.2 0.54 9.9 0.8 3.1 3 0 0 3 3 3 0 Putative treble-clef, zinc-finger, Zn-binding PolC_DP2 PF03833.13 gi|212225017|ref|YP_002308253.1| - 0.18 9.6 4.8 0.2 9.5 4.8 1.0 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 ADK_lid PF05191.14 gi|212225017|ref|YP_002308253.1| - 0.3 11.1 9.6 3 7.9 0.5 3.4 3 1 0 3 3 3 0 Adenylate kinase, active site lid zf-AN1 PF01428.16 gi|212225017|ref|YP_002308253.1| - 0.33 11.2 11.3 3.1 8.0 1.5 2.6 1 1 0 2 2 2 0 AN1-like Zinc finger Zn_Tnp_IS1595 PF12760.7 gi|212225017|ref|YP_002308253.1| - 0.34 10.9 20.6 8.9 6.4 8.8 3.9 2 1 1 3 3 3 0 Transposase zinc-ribbon domain Zn_ribbon_SprT PF17283.2 gi|212225017|ref|YP_002308253.1| - 0.34 10.8 17.8 9.8 6.2 0.8 3.9 2 1 0 2 2 2 0 SprT-like zinc ribbon domain IBR PF01485.21 gi|212225017|ref|YP_002308253.1| - 0.35 11.1 10.3 0.11 12.8 4.5 2.1 1 1 1 2 2 2 0 IBR domain, a half RING-finger domain TF_Zn_Ribbon PF08271.12 gi|212225017|ref|YP_002308253.1| - 0.45 10.1 19.6 0.25 10.9 6.1 3.5 2 1 3 5 5 5 0 TFIIB zinc-binding MCM_OB PF17207.3 gi|212225017|ref|YP_002308253.1| - 0.48 10.3 5.2 0.67 9.8 5.2 1.3 1 1 0 1 1 1 0 MCM OB domain zf-C4_Topoisom PF01396.19 gi|212225017|ref|YP_002308253.1| - 0.51 10.2 13.8 1.9 8.4 0.5 3.6 2 1 2 4 4 4 0 Topoisomerase DNA binding C4 zinc finger zf-Mss51 PF13824.6 gi|212225017|ref|YP_002308253.1| - 0.54 10.4 13.1 1.9 8.6 2.1 2.5 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 Gin PF10764.9 gi|212225017|ref|YP_002308253.1| - 0.57 10.2 6.5 3.9 7.5 0.6 2.8 2 1 0 2 2 2 0 Inhibitor of sigma-G Gin DUF2256 PF10013.9 gi|212225017|ref|YP_002308253.1| - 0.6 10.3 9.1 2 8.6 0.4 3.1 2 1 1 3 3 3 0 Uncharacterized protein conserved in bacteria (DUF2256) DUF2321 PF10083.9 gi|212225017|ref|YP_002308253.1| - 0.69 9.5 7.7 0.15 11.6 3.6 2.0 1 1 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2321) DUF35_N PF12172.8 gi|212225017|ref|YP_002308253.1| - 0.72 9.8 16.0 2.9 7.9 3.3 3.8 1 1 1 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Nop10p PF04135.12 gi|212225017|ref|YP_002308253.1| - 0.78 9.8 9.8 1.2 9.3 1.0 2.7 1 1 1 2 2 2 0 Nucleolar RNA-binding protein, Nop10p family NOB1_Zn_bind PF08772.11 gi|212225017|ref|YP_002308253.1| - 0.78 9.9 11.0 0.27 11.4 4.7 2.2 1 1 1 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like TFIIS_C PF01096.18 gi|212225017|ref|YP_002308253.1| - 0.82 9.6 13.5 8.3 6.4 0.1 3.8 3 1 1 4 4 4 0 Transcription factor S-II (TFIIS) DUF4428 PF14471.6 gi|212225017|ref|YP_002308253.1| - 0.89 9.5 7.0 3.4 7.7 2.6 2.6 1 1 1 2 2 2 0 Domain of unknown function (DUF4428) zf-C2H2 PF00096.26 gi|212225017|ref|YP_002308253.1| - 0.99 10.0 12.1 5.8 7.6 0.5 3.6 4 0 0 4 4 3 0 Zinc finger, C2H2 type DUF2039 PF10217.9 gi|212225017|ref|YP_002308253.1| - 1 9.7 8.5 3.9 7.9 8.5 1.8 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2039) DUF2072 PF09845.9 gi|212225017|ref|YP_002308253.1| - 1.4 9.2 10.7 0.15 12.3 1.4 2.2 1 1 1 2 2 2 0 Zn-ribbon containing protein zf_C2H2_10 PF18414.1 gi|212225017|ref|YP_002308253.1| - 1.4 8.5 10.5 3.2 7.4 0.1 2.8 3 0 0 3 3 2 0 C2H2 type zinc-finger NinF PF05810.12 gi|212225017|ref|YP_002308253.1| - 1.7 8.5 5.8 1.1 9.2 3.4 1.8 1 1 1 2 2 2 0 NinF protein zf-HIT PF04438.16 gi|212225017|ref|YP_002308253.1| - 2.2 8.2 16.6 2.6 8.0 5.9 3.2 1 1 1 2 2 2 0 HIT zinc finger NRDD PF13597.6 gi|212225017|ref|YP_002308253.1| - 2.5 6.8 11.5 0.53 9.0 1.9 2.0 1 1 1 2 2 2 0 Anaerobic ribonucleoside-triphosphate reductase DUF2752 PF10825.8 gi|212225017|ref|YP_002308253.1| - 2.7 8.1 0.1 2.7 8.1 0.1 2.7 3 0 0 3 3 2 0 Protein of unknown function (DUF2752) zf-trcl PF13451.6 gi|212225017|ref|YP_002308253.1| - 2.8 7.9 16.7 2.4 8.1 1.3 3.9 2 1 2 4 4 4 0 Probable zinc-ribbon domain LIM PF00412.22 gi|212225017|ref|YP_002308253.1| - 3 8.2 11.3 5.9e+02 0.8 11.6 3.0 1 1 0 1 1 1 0 LIM domain Nudix_N_2 PF14803.6 gi|212225017|ref|YP_002308253.1| - 3.3 7.7 16.7 4 7.5 5.0 3.7 2 1 2 4 4 4 0 Nudix N-terminal Zn_Tnp_IS91 PF14319.6 gi|212225017|ref|YP_002308253.1| - 3.9 7.6 10.8 6.5 6.9 5.3 2.2 1 1 1 2 2 2 0 Transposase zinc-binding domain Ribosomal_L37ae PF01780.19 gi|212225017|ref|YP_002308253.1| - 3.9 7.6 12.2 26 5.0 6.1 3.1 1 1 1 2 2 2 0 Ribosomal L37ae protein family Prok-RING_1 PF14446.6 gi|212225017|ref|YP_002308253.1| - 4.2 7.4 12.8 0.21 11.6 2.9 2.6 1 1 1 2 2 2 0 Prokaryotic RING finger family 1 NMD3 PF04981.13 gi|212225017|ref|YP_002308253.1| - 5.1 6.5 8.7 6.5 6.1 8.7 1.1 1 0 0 1 1 1 0 NMD3 family zf-TFIIB PF13453.6 gi|212225017|ref|YP_002308253.1| - 5.7 6.4 16.3 11 5.4 0.4 3.8 2 1 1 3 3 3 0 Transcription factor zinc-finger Anti-TRAP PF15777.5 gi|212225017|ref|YP_002308253.1| - 8.1 6.5 13.1 1.4 8.9 4.6 2.3 1 1 1 2 2 2 0 Tryptophan RNA-binding attenuator protein inhibitory protein DUF3268 PF11672.8 gi|212225017|ref|YP_002308253.1| - 9.5 6.6 7.7 3.1 8.2 2.7 2.0 1 1 1 2 2 2 0 zinc-finger-containing domain EF1_GNE PF00736.19 gi|212225018|ref|YP_002308254.1| - 7.2e-18 64.6 0.1 8e-18 64.4 0.1 1.0 1 0 0 1 1 1 1 EF-1 guanine nucleotide exchange domain Sigma70_r4_2 PF08281.12 gi|212225018|ref|YP_002308254.1| - 0.2 11.4 0.3 0.33 10.7 0.0 1.6 2 0 0 2 2 2 0 Sigma-70, region 4 TrmB PF01978.19 gi|212225019|ref|YP_002308255.1| - 9.3e-10 38.3 0.1 4.3e-06 26.5 0.1 2.3 2 0 0 2 2 2 2 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|212225019|ref|YP_002308255.1| - 1e-08 34.9 0.6 9.9e-08 31.8 0.4 2.2 2 0 0 2 2 2 1 MarR family MarR PF01047.22 gi|212225019|ref|YP_002308255.1| - 1.6e-08 34.3 0.3 6.9e-08 32.3 0.2 2.0 2 0 0 2 2 2 1 MarR family HTH_Crp_2 PF13545.6 gi|212225019|ref|YP_002308255.1| - 1.9e-05 24.6 0.5 0.00061 19.7 0.4 2.3 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain HTH_IclR PF09339.10 gi|212225019|ref|YP_002308255.1| - 5.5e-05 22.9 0.7 0.014 15.2 0.4 2.4 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_34 PF13601.6 gi|212225019|ref|YP_002308255.1| - 0.00054 20.1 0.0 0.001 19.2 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_20 PF12840.7 gi|212225019|ref|YP_002308255.1| - 0.0012 18.9 0.5 0.0024 17.9 0.5 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.6 gi|212225019|ref|YP_002308255.1| - 0.0035 16.9 1.9 0.0038 16.8 0.5 1.8 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding Rrf2 PF02082.20 gi|212225019|ref|YP_002308255.1| - 0.0037 17.6 0.4 0.2 12.0 0.1 2.7 3 0 0 3 3 3 1 Transcriptional regulator Penicillinase_R PF03965.16 gi|212225019|ref|YP_002308255.1| - 0.004 17.5 0.0 0.7 10.3 0.0 2.6 2 0 0 2 2 2 1 Penicillinase repressor Sigma70_r4 PF04545.16 gi|212225019|ref|YP_002308255.1| - 0.0064 16.0 0.6 0.035 13.6 0.1 2.3 2 0 0 2 2 2 1 Sigma-70, region 4 GntR PF00392.21 gi|212225019|ref|YP_002308255.1| - 0.0069 16.0 0.4 0.22 11.2 0.3 2.4 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family HTH_27 PF13463.6 gi|212225019|ref|YP_002308255.1| - 0.0091 16.5 0.3 0.025 15.1 0.1 1.9 2 0 0 2 2 1 1 Winged helix DNA-binding domain Sulfolobus_pRN PF05584.11 gi|212225019|ref|YP_002308255.1| - 0.013 15.5 2.6 0.019 15.0 0.1 2.5 3 0 0 3 3 2 0 Sulfolobus plasmid regulatory protein HTH_11 PF08279.12 gi|212225019|ref|YP_002308255.1| - 0.016 15.1 0.1 2.4 8.2 0.1 2.5 2 0 0 2 2 2 0 HTH domain SMC_ScpB PF04079.16 gi|212225019|ref|YP_002308255.1| - 0.079 12.6 0.0 0.76 9.4 0.0 2.4 3 0 0 3 3 3 0 Segregation and condensation complex subunit ScpB GerE PF00196.19 gi|212225019|ref|YP_002308255.1| - 0.13 11.9 0.2 16 5.1 0.2 2.5 2 0 0 2 2 2 0 Bacterial regulatory proteins, luxR family AbiEii PF08843.11 gi|212225020|ref|YP_002308256.1| - 0.026 14.5 0.1 0.036 14.0 0.1 1.3 1 1 0 1 1 1 0 Nucleotidyl transferase AbiEii toxin, Type IV TA system TPR_12 PF13424.6 gi|212225021|ref|YP_002308257.1| - 1e-16 61.0 16.4 2.1e-08 34.3 0.4 3.9 4 0 0 4 4 4 2 Tetratricopeptide repeat TPR_14 PF13428.6 gi|212225021|ref|YP_002308257.1| - 4e-10 39.7 18.5 0.0028 18.3 0.2 6.3 4 2 3 7 7 6 3 Tetratricopeptide repeat TPR_16 PF13432.6 gi|212225021|ref|YP_002308257.1| - 8.5e-10 39.1 7.9 5.6e-06 26.9 0.8 3.4 2 1 1 3 3 3 2 Tetratricopeptide repeat TPR_8 PF13181.6 gi|212225021|ref|YP_002308257.1| - 1.3e-09 37.4 9.9 0.0048 17.0 0.4 5.2 5 0 0 5 5 4 3 Tetratricopeptide repeat TPR_6 PF13174.6 gi|212225021|ref|YP_002308257.1| - 4.8e-09 36.3 7.5 0.00037 20.9 0.1 5.7 7 0 0 7 7 5 2 Tetratricopeptide repeat TPR_7 PF13176.6 gi|212225021|ref|YP_002308257.1| - 5.2e-09 35.5 9.6 7.5e-05 22.5 0.2 4.9 5 0 0 5 5 4 2 Tetratricopeptide repeat TPR_19 PF14559.6 gi|212225021|ref|YP_002308257.1| - 1.4e-07 31.9 13.2 0.0027 18.2 0.6 4.5 2 1 2 5 5 4 2 Tetratricopeptide repeat ANAPC5 PF12862.7 gi|212225021|ref|YP_002308257.1| - 1e-06 28.7 1.7 0.016 15.3 0.1 3.1 1 1 1 2 2 2 2 Anaphase-promoting complex subunit 5 TPR_2 PF07719.17 gi|212225021|ref|YP_002308257.1| - 2.3e-06 27.3 28.1 6.5e-05 22.7 0.7 6.4 7 1 0 7 7 6 2 Tetratricopeptide repeat TPR_17 PF13431.6 gi|212225021|ref|YP_002308257.1| - 2.6e-05 24.3 2.5 0.15 12.5 0.1 4.3 4 0 0 4 4 4 1 Tetratricopeptide repeat TPR_MalT PF17874.1 gi|212225021|ref|YP_002308257.1| - 5e-05 22.8 0.4 9.5e-05 21.9 0.4 1.3 1 0 0 1 1 1 1 MalT-like TPR region TPR_1 PF00515.28 gi|212225021|ref|YP_002308257.1| - 0.00014 21.5 15.9 0.00082 19.1 0.8 5.2 6 0 0 6 6 5 1 Tetratricopeptide repeat RPN7 PF10602.9 gi|212225021|ref|YP_002308257.1| - 0.00079 19.2 8.2 0.015 15.1 0.2 3.1 1 1 2 3 3 3 2 26S proteasome subunit RPN7 SNAP PF14938.6 gi|212225021|ref|YP_002308257.1| - 0.001 18.6 4.2 0.0099 15.3 4.0 2.4 1 1 0 1 1 1 1 Soluble NSF attachment protein, SNAP NARP1 PF12569.8 gi|212225021|ref|YP_002308257.1| - 0.001 18.1 5.1 0.0021 17.0 1.6 2.7 1 1 2 3 3 3 1 NMDA receptor-regulated protein 1 TPR_10 PF13374.6 gi|212225021|ref|YP_002308257.1| - 0.0017 18.1 10.7 0.14 12.0 0.1 5.0 5 0 0 5 5 5 1 Tetratricopeptide repeat TPR_21 PF09976.9 gi|212225021|ref|YP_002308257.1| - 0.0019 18.0 1.9 0.0051 16.5 0.2 2.5 2 1 0 2 2 2 1 Tetratricopeptide repeat-like domain TPR_5 PF12688.7 gi|212225021|ref|YP_002308257.1| - 0.0024 18.1 0.3 0.57 10.4 0.1 3.1 1 1 2 3 3 3 2 Tetratrico peptide repeat Sec5 PF15469.6 gi|212225021|ref|YP_002308257.1| - 0.0035 17.2 0.8 0.0092 15.8 0.8 1.8 1 0 0 1 1 1 1 Exocyst complex component Sec5 SPO22 PF08631.10 gi|212225021|ref|YP_002308257.1| - 0.0058 16.2 0.9 0.019 14.5 0.3 2.1 1 1 1 2 2 2 1 Meiosis protein SPO22/ZIP4 like ANAPC3 PF12895.7 gi|212225021|ref|YP_002308257.1| - 0.0062 16.7 4.9 0.55 10.5 0.7 3.1 1 1 2 3 3 3 2 Anaphase-promoting complex, cyclosome, subunit 3 PPR PF01535.20 gi|212225021|ref|YP_002308257.1| - 0.0067 16.6 4.3 0.92 9.9 0.0 4.8 5 0 0 5 5 5 1 PPR repeat MIT PF04212.18 gi|212225021|ref|YP_002308257.1| - 0.011 15.8 0.0 0.011 15.8 0.0 3.6 3 1 1 4 4 3 0 MIT (microtubule interacting and transport) domain LppC PF04348.13 gi|212225021|ref|YP_002308257.1| - 0.029 13.2 0.1 0.043 12.6 0.1 1.2 1 0 0 1 1 1 0 LppC putative lipoprotein DHR-2 PF06920.13 gi|212225021|ref|YP_002308257.1| - 0.034 12.8 1.2 0.041 12.5 1.2 1.2 1 0 0 1 1 1 0 Dock homology region 2 TPR_4 PF07721.14 gi|212225021|ref|YP_002308257.1| - 0.13 13.0 0.9 57 4.8 0.0 3.6 4 0 0 4 4 2 0 Tetratricopeptide repeat TFIID_20kDa PF03847.13 gi|212225021|ref|YP_002308257.1| - 0.29 11.7 4.5 2.6 8.6 0.4 3.3 2 1 1 3 3 3 0 Transcription initiation factor TFIID subunit A DUF3856 PF12968.7 gi|212225021|ref|YP_002308257.1| - 0.29 11.2 3.3 4.1 7.5 0.1 3.2 3 1 1 4 4 3 0 Domain of Unknown Function (DUF3856) DUF2225 PF09986.9 gi|212225021|ref|YP_002308257.1| - 0.61 9.8 3.6 2.4 7.8 2.2 2.4 2 1 1 3 3 3 0 Uncharacterized protein conserved in bacteria (DUF2225) NRDD PF13597.6 gi|212225022|ref|YP_002308258.1| - 2e-150 502.3 0.0 2.3e-150 502.1 0.0 1.0 1 0 0 1 1 1 1 Anaerobic ribonucleoside-triphosphate reductase HypA PF01155.19 gi|212225022|ref|YP_002308258.1| - 0.0025 17.8 0.2 0.0053 16.8 0.2 1.5 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA TackOD1 PF18551.1 gi|212225022|ref|YP_002308258.1| - 0.005 16.5 0.0 0.0087 15.8 0.0 1.3 1 0 0 1 1 1 1 Thaumarchaeal output domain 1 Radical_SAM PF04055.21 gi|212225023|ref|YP_002308259.1| - 6.1e-16 59.2 0.0 9e-16 58.7 0.0 1.2 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|212225023|ref|YP_002308259.1| - 8.8e-09 35.8 0.1 1.2e-08 35.4 0.1 1.2 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|212225023|ref|YP_002308259.1| - 4.1e-06 26.9 0.0 6.9e-06 26.2 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Peripla_BP_2 PF01497.18 gi|212225024|ref|YP_002308260.1| - 1.5e-30 106.5 0.1 1.9e-30 106.2 0.1 1.1 1 0 0 1 1 1 1 Periplasmic binding protein Peripla_BP_4 PF13407.6 gi|212225024|ref|YP_002308260.1| - 0.0057 16.3 0.0 0.0099 15.5 0.0 1.4 1 1 0 1 1 1 1 Periplasmic binding protein domain FecCD PF01032.18 gi|212225025|ref|YP_002308261.1| - 2.2e-88 296.3 35.8 3.2e-88 295.8 35.8 1.2 1 0 0 1 1 1 1 FecCD transport family Adeno_E3B PF03376.14 gi|212225025|ref|YP_002308261.1| - 0.097 12.9 1.5 0.56 10.5 0.9 2.5 2 0 0 2 2 2 0 Adenovirus E3B protein ABC_tran PF00005.27 gi|212225026|ref|YP_002308262.1| - 9.7e-31 107.1 0.0 1.3e-30 106.7 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|212225026|ref|YP_002308262.1| - 2.1e-15 57.4 1.1 2e-07 31.2 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|212225026|ref|YP_002308262.1| - 5.5e-08 32.5 0.0 0.0047 16.4 0.0 2.1 1 1 1 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|212225026|ref|YP_002308262.1| - 2e-07 31.1 0.0 9.3e-06 25.6 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain AAA_29 PF13555.6 gi|212225026|ref|YP_002308262.1| - 2e-06 27.5 0.0 3.7e-06 26.6 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|212225026|ref|YP_002308262.1| - 8.2e-05 23.2 0.0 0.00013 22.6 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|212225026|ref|YP_002308262.1| - 0.00046 20.6 0.0 0.00085 19.7 0.0 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_14 PF13173.6 gi|212225026|ref|YP_002308262.1| - 0.001 19.1 0.0 0.0097 15.9 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_27 PF13514.6 gi|212225026|ref|YP_002308262.1| - 0.0025 17.4 0.0 0.004 16.8 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA PF00004.29 gi|212225026|ref|YP_002308262.1| - 0.0048 17.3 0.0 0.012 16.0 0.0 1.8 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_30 PF13604.6 gi|212225026|ref|YP_002308262.1| - 0.015 15.1 0.0 0.03 14.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.6 gi|212225026|ref|YP_002308262.1| - 0.019 15.3 0.4 0.15 12.4 0.4 2.0 1 1 0 1 1 1 0 AAA domain T2SSE PF00437.20 gi|212225026|ref|YP_002308262.1| - 0.022 13.8 0.0 0.039 13.0 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_19 PF13245.6 gi|212225026|ref|YP_002308262.1| - 0.025 14.9 0.2 0.08 13.3 0.1 1.8 2 0 0 2 2 2 0 AAA domain RecA PF00154.21 gi|212225026|ref|YP_002308262.1| - 0.026 14.0 0.0 0.042 13.3 0.0 1.3 1 0 0 1 1 1 0 recA bacterial DNA recombination protein NB-ARC PF00931.22 gi|212225026|ref|YP_002308262.1| - 0.028 13.6 0.0 0.054 12.7 0.0 1.4 1 0 0 1 1 1 0 NB-ARC domain ATPase_2 PF01637.18 gi|212225026|ref|YP_002308262.1| - 0.037 13.9 0.0 0.058 13.3 0.0 1.2 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea NACHT PF05729.12 gi|212225026|ref|YP_002308262.1| - 0.037 14.0 0.1 0.079 12.9 0.0 1.6 2 0 0 2 2 1 0 NACHT domain TniB PF05621.11 gi|212225026|ref|YP_002308262.1| - 0.049 13.0 0.1 1.4 8.3 0.0 2.1 2 0 0 2 2 2 0 Bacterial TniB protein Zeta_toxin PF06414.12 gi|212225026|ref|YP_002308262.1| - 0.052 12.8 0.0 0.09 12.0 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin AAA_33 PF13671.6 gi|212225026|ref|YP_002308262.1| - 0.06 13.5 0.0 0.15 12.2 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_24 PF13479.6 gi|212225026|ref|YP_002308262.1| - 0.064 13.0 0.0 0.097 12.4 0.0 1.2 1 0 0 1 1 1 0 AAA domain ABC_ATPase PF09818.9 gi|212225026|ref|YP_002308262.1| - 0.065 12.0 0.0 1.6 7.4 0.0 2.1 2 0 0 2 2 2 0 Predicted ATPase of the ABC class Mg_chelatase PF01078.21 gi|212225026|ref|YP_002308262.1| - 0.067 12.6 0.0 0.11 11.9 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI NTPase_1 PF03266.15 gi|212225026|ref|YP_002308262.1| - 0.092 12.6 0.1 0.3 11.0 0.0 1.8 2 0 0 2 2 2 0 NTPase G-alpha PF00503.20 gi|212225026|ref|YP_002308262.1| - 0.12 11.5 0.0 0.17 11.0 0.0 1.1 1 0 0 1 1 1 0 G-protein alpha subunit AAA_18 PF13238.6 gi|212225026|ref|YP_002308262.1| - 0.13 12.8 0.0 0.35 11.4 0.0 1.7 2 0 0 2 2 2 0 AAA domain TsaE PF02367.17 gi|212225026|ref|YP_002308262.1| - 0.16 12.0 0.0 0.29 11.1 0.0 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE SRP54 PF00448.22 gi|212225026|ref|YP_002308262.1| - 0.19 11.3 0.0 0.3 10.7 0.0 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain Gtr1_RagA PF04670.12 gi|212225026|ref|YP_002308262.1| - 0.2 11.0 0.0 0.28 10.5 0.0 1.1 1 0 0 1 1 1 0 Gtr1/RagA G protein conserved region PIF1 PF05970.14 gi|212225026|ref|YP_002308262.1| - 0.22 10.7 0.0 0.37 9.9 0.0 1.3 1 0 0 1 1 1 0 PIF1-like helicase cobW PF02492.19 gi|212225026|ref|YP_002308262.1| - 0.22 11.1 0.0 0.38 10.3 0.0 1.3 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain CobN-Mg_chel PF02514.16 gi|212225027|ref|YP_002308263.1| - 0 1168.3 0.0 0 1168.1 0.0 1.0 1 0 0 1 1 1 1 CobN/Magnesium Chelatase CPSase_L_D3 PF02787.19 gi|212225027|ref|YP_002308263.1| - 0.084 13.2 0.0 0.58 10.5 0.0 2.4 2 0 0 2 2 2 0 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AAA_lid_2 PF17863.1 gi|212225028|ref|YP_002308264.1| - 2.6e-18 65.6 0.1 5.1e-18 64.7 0.1 1.5 1 0 0 1 1 1 1 AAA lid domain Mg_chelatase PF01078.21 gi|212225028|ref|YP_002308264.1| - 8.1e-14 51.5 0.2 1.8e-07 30.7 0.0 2.5 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI VWA_2 PF13519.6 gi|212225028|ref|YP_002308264.1| - 1.5e-13 51.4 0.0 6.4e-13 49.3 0.0 2.1 2 0 0 2 2 1 1 von Willebrand factor type A domain AAA_5 PF07728.14 gi|212225028|ref|YP_002308264.1| - 2.8e-09 37.1 0.1 0.0015 18.6 0.0 2.6 2 0 0 2 2 2 2 AAA domain (dynein-related subfamily) MCM PF00493.23 gi|212225028|ref|YP_002308264.1| - 4.6e-08 32.4 0.0 3e-05 23.2 0.0 2.8 2 1 0 2 2 2 2 MCM P-loop domain VWA PF00092.28 gi|212225028|ref|YP_002308264.1| - 5.9e-08 33.1 0.0 1.1e-07 32.3 0.0 1.4 1 0 0 1 1 1 1 von Willebrand factor type A domain Sigma54_activat PF00158.26 gi|212225028|ref|YP_002308264.1| - 0.00022 21.0 0.0 0.4 10.4 0.0 2.3 2 0 0 2 2 2 2 Sigma-54 interaction domain AAA_22 PF13401.6 gi|212225028|ref|YP_002308264.1| - 0.00049 20.4 0.0 0.0023 18.2 0.0 2.1 1 1 0 1 1 1 1 AAA domain AAA PF00004.29 gi|212225028|ref|YP_002308264.1| - 0.00096 19.6 0.0 0.005 17.3 0.0 2.3 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) TIP49 PF06068.13 gi|212225028|ref|YP_002308264.1| - 0.0011 18.3 0.1 0.65 9.1 0.0 2.4 2 0 0 2 2 2 2 TIP49 P-loop domain AAA_29 PF13555.6 gi|212225028|ref|YP_002308264.1| - 0.0011 18.7 0.0 0.0026 17.4 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|212225028|ref|YP_002308264.1| - 0.0014 19.1 0.1 0.0035 17.7 0.1 1.8 1 1 0 1 1 1 1 AAA ATPase domain DUF815 PF05673.13 gi|212225028|ref|YP_002308264.1| - 0.0016 17.7 0.0 0.0094 15.1 0.0 2.0 2 0 0 2 2 2 1 Protein of unknown function (DUF815) PAT1 PF09770.9 gi|212225028|ref|YP_002308264.1| - 0.015 13.6 0.7 0.02 13.2 0.7 1.1 1 0 0 1 1 1 0 Topoisomerase II-associated protein PAT1 TsaE PF02367.17 gi|212225028|ref|YP_002308264.1| - 0.029 14.4 0.0 0.063 13.3 0.0 1.5 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE Mg_chelatase_C PF13335.6 gi|212225028|ref|YP_002308264.1| - 0.053 14.2 0.6 0.15 12.7 0.2 2.0 2 0 0 2 2 1 0 Magnesium chelatase, subunit ChlI C-terminal AAA_7 PF12775.7 gi|212225028|ref|YP_002308264.1| - 0.13 11.8 0.0 0.34 10.4 0.0 1.7 2 0 0 2 2 2 0 P-loop containing dynein motor region TIP49_C PF17856.1 gi|212225028|ref|YP_002308264.1| - 0.21 11.7 1.1 0.48 10.6 1.1 1.6 1 0 0 1 1 1 0 TIP49 AAA-lid domain ABC_tran PF00005.27 gi|212225028|ref|YP_002308264.1| - 0.24 11.9 0.9 0.93 10.0 0.0 2.3 3 0 0 3 3 2 0 ABC transporter SelP_N PF04592.14 gi|212225028|ref|YP_002308264.1| - 1.2 8.5 6.0 2.2 7.6 6.0 1.3 1 0 0 1 1 1 0 Selenoprotein P, N terminal region Cpn60_TCP1 PF00118.24 gi|212225029|ref|YP_002308265.1| - 2.3e-181 603.7 25.2 2.6e-181 603.5 25.2 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family DUF3924 PF13062.6 gi|212225029|ref|YP_002308265.1| - 0.098 12.6 0.0 0.37 10.8 0.0 2.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3924) AAA_5 PF07728.14 gi|212225029|ref|YP_002308265.1| - 0.13 12.3 0.5 0.34 10.9 0.1 2.0 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) TrwC PF08751.11 gi|212225029|ref|YP_002308265.1| - 0.28 10.7 2.3 0.16 11.4 0.2 1.7 2 0 0 2 2 2 0 TrwC relaxase DUF1464 PF07318.12 gi|212225030|ref|YP_002308266.1| - 1.5e-130 435.2 0.8 1.7e-130 435.0 0.8 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1464) B12-binding PF02310.19 gi|212225030|ref|YP_002308266.1| - 0.029 14.4 0.0 0.067 13.2 0.0 1.5 1 0 0 1 1 1 0 B12 binding domain BBS1 PF14779.6 gi|212225031|ref|YP_002308267.1| - 0.096 12.1 0.4 7.4 5.9 0.1 2.2 2 0 0 2 2 2 0 Ciliary BBSome complex subunit 1 Wzy_C PF04932.15 gi|212225032|ref|YP_002308268.1| - 3.6 7.2 12.2 0.21 11.2 0.2 3.0 3 0 0 3 3 3 0 O-Antigen ligase TYW3 PF02676.14 gi|212225033|ref|YP_002308269.1| - 1.6e-46 158.4 0.0 2e-46 158.0 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase TYW3 AAA_12 PF13087.6 gi|212225034|ref|YP_002308270.1| - 1.1e-57 194.9 0.0 1.6e-57 194.3 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_11 PF13086.6 gi|212225034|ref|YP_002308270.1| - 1.1e-56 192.5 0.0 2.7e-56 191.2 0.0 1.6 2 0 0 2 2 2 1 AAA domain AAA_30 PF13604.6 gi|212225034|ref|YP_002308270.1| - 1.3e-14 54.4 0.2 1.7e-09 37.6 0.0 3.3 3 1 0 3 3 3 2 AAA domain AAA_19 PF13245.6 gi|212225034|ref|YP_002308270.1| - 1.7e-08 34.9 0.0 1.7e-07 31.7 0.0 2.5 2 1 0 2 2 2 1 AAA domain Viral_helicase1 PF01443.18 gi|212225034|ref|YP_002308270.1| - 9.2e-07 28.8 0.0 0.054 13.2 0.0 3.2 3 0 0 3 3 3 2 Viral (Superfamily 1) RNA helicase PIF1 PF05970.14 gi|212225034|ref|YP_002308270.1| - 1.5e-06 27.6 0.0 5.5e-05 22.5 0.0 2.2 2 0 0 2 2 2 1 PIF1-like helicase AAA_16 PF13191.6 gi|212225034|ref|YP_002308270.1| - 9.6e-05 22.8 0.3 0.00082 19.8 0.3 2.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|212225034|ref|YP_002308270.1| - 0.0004 20.7 0.0 0.0031 17.8 0.0 2.5 2 1 0 2 2 2 1 AAA domain Helicase_RecD PF05127.14 gi|212225034|ref|YP_002308270.1| - 0.0027 17.6 0.3 0.17 11.7 0.0 2.4 2 0 0 2 2 2 1 Helicase UvrD-helicase PF00580.21 gi|212225034|ref|YP_002308270.1| - 0.003 17.1 0.2 0.0077 15.8 0.1 1.6 1 1 0 1 1 1 1 UvrD/REP helicase N-terminal domain T2SSE PF00437.20 gi|212225034|ref|YP_002308270.1| - 0.0068 15.5 0.0 0.015 14.4 0.0 1.6 1 0 0 1 1 1 1 Type II/IV secretion system protein ResIII PF04851.15 gi|212225034|ref|YP_002308270.1| - 0.0076 16.3 0.1 0.025 14.6 0.0 1.9 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit cobW PF02492.19 gi|212225034|ref|YP_002308270.1| - 0.02 14.5 0.0 0.49 10.0 0.0 2.6 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain Flavi_DEAD PF07652.14 gi|212225034|ref|YP_002308270.1| - 0.039 13.9 0.1 1.5 8.7 0.0 2.3 2 0 0 2 2 2 0 Flavivirus DEAD domain TrwB_AAD_bind PF10412.9 gi|212225034|ref|YP_002308270.1| - 0.052 12.5 0.0 0.086 11.7 0.0 1.2 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain UvrD_C_2 PF13538.6 gi|212225034|ref|YP_002308270.1| - 0.077 12.8 0.0 0.18 11.7 0.0 1.7 1 0 0 1 1 1 0 UvrD-like helicase C-terminal domain Sigma54_activat PF00158.26 gi|212225034|ref|YP_002308270.1| - 0.1 12.3 0.0 0.41 10.3 0.0 1.9 2 0 0 2 2 2 0 Sigma-54 interaction domain SRP54 PF00448.22 gi|212225034|ref|YP_002308270.1| - 0.13 11.9 0.0 0.29 10.7 0.0 1.6 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain DUF1319 PF07028.11 gi|212225035|ref|YP_002308271.1| - 0.022 15.0 0.0 0.028 14.6 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1319) IMPDH PF00478.25 gi|212225036|ref|YP_002308272.1| - 8.2e-149 495.3 9.7 9.4e-149 495.1 9.7 1.0 1 0 0 1 1 1 1 IMP dehydrogenase / GMP reductase domain CBS PF00571.28 gi|212225036|ref|YP_002308272.1| - 4.8e-31 107.0 9.9 6.3e-17 61.8 2.7 3.1 2 1 1 3 3 3 2 CBS domain NMO PF03060.15 gi|212225036|ref|YP_002308272.1| - 4.6e-08 32.8 5.6 0.0014 18.1 4.2 2.4 2 0 0 2 2 2 2 Nitronate monooxygenase FMN_dh PF01070.18 gi|212225036|ref|YP_002308272.1| - 7.6e-07 28.5 13.0 1.7e-06 27.3 12.1 1.9 2 1 0 2 2 2 1 FMN-dependent dehydrogenase Glu_synthase PF01645.17 gi|212225036|ref|YP_002308272.1| - 1.5e-05 24.3 4.5 2.6e-05 23.5 4.5 1.3 1 0 0 1 1 1 1 Conserved region in glutamate synthase His_biosynth PF00977.21 gi|212225036|ref|YP_002308272.1| - 7.6e-05 22.3 4.5 7.6e-05 22.3 4.5 2.1 2 1 0 2 2 2 1 Histidine biosynthesis protein PRC PF05239.16 gi|212225036|ref|YP_002308272.1| - 0.00059 19.9 3.3 0.15 12.1 0.5 2.9 2 0 0 2 2 2 2 PRC-barrel domain DHO_dh PF01180.21 gi|212225036|ref|YP_002308272.1| - 0.075 12.2 3.5 0.11 11.6 2.5 1.8 1 1 1 2 2 2 0 Dihydroorotate dehydrogenase ThiG PF05690.14 gi|212225036|ref|YP_002308272.1| - 0.075 12.3 11.1 0.045 13.1 2.6 3.3 2 1 1 3 3 3 0 Thiazole biosynthesis protein ThiG G3P_antiterm PF04309.12 gi|212225036|ref|YP_002308272.1| - 0.23 10.9 2.2 0.44 10.0 0.2 2.4 2 1 0 3 3 3 0 Glycerol-3-phosphate responsive antiterminator FAD_binding_2 PF00890.24 gi|212225037|ref|YP_002308273.1| - 4e-72 243.6 1.1 1.4e-70 238.5 0.6 2.0 2 0 0 2 2 2 1 FAD binding domain Succ_DH_flav_C PF02910.20 gi|212225037|ref|YP_002308273.1| - 1.6e-10 41.1 0.1 6.4e-06 26.2 0.1 2.4 1 1 1 2 2 2 2 Fumarate reductase flavoprotein C-term Pyr_redox_2 PF07992.14 gi|212225037|ref|YP_002308273.1| - 4.3e-09 36.0 0.1 2.9e-05 23.4 0.0 2.6 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 gi|212225037|ref|YP_002308273.1| - 2.9e-08 33.7 2.3 0.00056 19.6 0.6 2.4 1 1 0 2 2 2 2 FAD dependent oxidoreductase HI0933_like PF03486.14 gi|212225037|ref|YP_002308273.1| - 2.4e-05 23.2 0.3 0.0016 17.3 0.8 2.3 3 0 0 3 3 3 1 HI0933-like protein Amino_oxidase PF01593.24 gi|212225037|ref|YP_002308273.1| - 2.9e-05 23.5 0.4 0.068 12.4 0.0 2.5 2 0 0 2 2 2 2 Flavin containing amine oxidoreductase NAD_binding_8 PF13450.6 gi|212225037|ref|YP_002308273.1| - 9e-05 22.6 0.9 0.00029 21.0 0.9 1.9 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain GIDA PF01134.22 gi|212225037|ref|YP_002308273.1| - 0.00074 18.7 0.8 0.0099 15.0 1.0 2.1 2 0 0 2 2 2 1 Glucose inhibited division protein A Thi4 PF01946.17 gi|212225037|ref|YP_002308273.1| - 0.0008 18.7 1.2 0.03 13.6 0.6 2.8 2 1 1 3 3 3 1 Thi4 family Pyr_redox_3 PF13738.6 gi|212225037|ref|YP_002308273.1| - 0.0025 17.1 0.4 0.004 16.5 0.4 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.19 gi|212225037|ref|YP_002308273.1| - 0.0028 17.0 0.2 0.0044 16.3 0.2 1.3 1 0 0 1 1 1 1 FAD binding domain ApbA PF02558.16 gi|212225037|ref|YP_002308273.1| - 0.016 14.9 0.0 0.027 14.1 0.0 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA UDPG_MGDP_dh_N PF03721.14 gi|212225037|ref|YP_002308273.1| - 0.034 13.7 0.2 0.052 13.1 0.2 1.2 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Pyr_redox PF00070.27 gi|212225037|ref|YP_002308273.1| - 0.049 14.2 0.4 0.14 12.7 0.4 1.8 2 0 0 2 2 1 0 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_2 PF03446.15 gi|212225037|ref|YP_002308273.1| - 0.15 12.3 0.0 0.26 11.5 0.0 1.4 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase 3HCDH_N PF02737.18 gi|212225037|ref|YP_002308273.1| - 0.2 11.5 0.5 0.32 10.9 0.5 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Trp_halogenase PF04820.14 gi|212225037|ref|YP_002308273.1| - 0.44 9.3 1.7 0.89 8.3 1.7 1.4 1 0 0 1 1 1 0 Tryptophan halogenase DUF401 PF04165.12 gi|212225038|ref|YP_002308274.1| - 9.1e-67 226.1 34.5 1.1e-66 225.8 34.5 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF401) NadA PF02445.16 gi|212225039|ref|YP_002308275.1| - 2e-112 375.2 1.0 2.3e-112 375.0 1.0 1.0 1 0 0 1 1 1 1 Quinolinate synthetase A protein Sua5_yciO_yrdC PF01300.18 gi|212225039|ref|YP_002308275.1| - 0.013 15.0 0.1 0.037 13.5 0.1 1.8 2 0 0 2 2 2 0 Telomere recombination Formin_GBD_N PF18382.1 gi|212225039|ref|YP_002308275.1| - 0.1 13.1 0.2 0.23 12.0 0.0 1.6 2 0 0 2 2 2 0 Formin N-terminal GTPase-binding domain AAA_14 PF13173.6 gi|212225040|ref|YP_002308276.1| - 1.5e-34 118.9 0.0 3e-34 117.9 0.0 1.6 1 0 0 1 1 1 1 AAA domain DUF4143 PF13635.6 gi|212225040|ref|YP_002308276.1| - 3.1e-17 62.9 0.6 5.8e-17 62.0 0.6 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4143) Tudor_RapA PF18337.1 gi|212225040|ref|YP_002308276.1| - 0.11 12.7 0.0 0.28 11.4 0.0 1.6 1 0 0 1 1 1 0 RapA N-terminal Tudor like domain QRPTase_C PF01729.19 gi|212225041|ref|YP_002308277.1| - 6.2e-51 172.5 1.7 8.5e-51 172.1 1.7 1.2 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain QRPTase_N PF02749.16 gi|212225041|ref|YP_002308277.1| - 4.6e-32 109.9 0.2 9.8e-32 108.9 0.2 1.6 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, N-terminal domain Radical_SAM PF04055.21 gi|212225041|ref|YP_002308277.1| - 0.0038 17.6 0.4 0.019 15.4 0.4 2.2 1 1 0 1 1 1 1 Radical SAM superfamily Ribul_P_3_epim PF00834.19 gi|212225041|ref|YP_002308277.1| - 0.0091 15.4 0.3 0.029 13.8 0.3 1.8 1 1 0 1 1 1 1 Ribulose-phosphate 3 epimerase family Ribosomal_S6 PF01250.17 gi|212225041|ref|YP_002308277.1| - 0.014 15.7 0.1 8.4 6.7 0.0 2.5 2 0 0 2 2 2 0 Ribosomal protein S6 ALAD PF00490.21 gi|212225041|ref|YP_002308277.1| - 0.04 13.1 0.0 0.062 12.5 0.0 1.2 1 0 0 1 1 1 0 Delta-aminolevulinic acid dehydratase DUF5010 PF16402.5 gi|212225041|ref|YP_002308277.1| - 0.06 12.2 0.0 0.092 11.6 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF5010) KDGP_aldolase PF07071.11 gi|212225041|ref|YP_002308277.1| - 0.068 13.0 0.3 1.1 9.0 0.2 2.2 1 1 1 2 2 2 0 KDGP aldolase Biotin_lipoyl_2 PF13533.6 gi|212225041|ref|YP_002308277.1| - 0.084 12.7 0.1 0.37 10.6 0.1 2.1 1 0 0 1 1 1 0 Biotin-lipoyl like DUF3783 PF12646.7 gi|212225041|ref|YP_002308277.1| - 0.14 12.2 0.1 0.39 10.7 0.0 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF3783) DAHP_snth_FXD PF18152.1 gi|212225041|ref|YP_002308277.1| - 0.35 10.7 2.9 1.4 8.8 0.0 2.9 3 1 0 3 3 3 0 DAHP synthase ferredoxin-like domain SOR_SNZ PF01680.17 gi|212225042|ref|YP_002308278.1| - 1.1e-98 329.2 7.6 1.2e-95 319.2 6.9 2.3 1 1 1 2 2 2 2 SOR/SNZ family ThiG PF05690.14 gi|212225042|ref|YP_002308278.1| - 2.1e-09 37.1 6.1 1.7e-07 30.8 0.4 2.4 2 0 0 2 2 2 2 Thiazole biosynthesis protein ThiG Dus PF01207.17 gi|212225042|ref|YP_002308278.1| - 0.0019 17.4 1.4 0.61 9.1 0.0 2.3 2 0 0 2 2 2 2 Dihydrouridine synthase (Dus) NanE PF04131.14 gi|212225042|ref|YP_002308278.1| - 0.0024 17.1 2.0 0.038 13.2 0.0 2.7 2 1 0 2 2 2 1 Putative N-acetylmannosamine-6-phosphate epimerase IGPS PF00218.21 gi|212225042|ref|YP_002308278.1| - 0.028 13.6 1.2 0.53 9.4 0.0 2.6 3 1 0 3 3 3 0 Indole-3-glycerol phosphate synthase FMN_dh PF01070.18 gi|212225042|ref|YP_002308278.1| - 0.031 13.3 0.3 0.31 10.0 0.0 2.2 2 0 0 2 2 2 0 FMN-dependent dehydrogenase NMO PF03060.15 gi|212225042|ref|YP_002308278.1| - 0.036 13.5 5.8 0.21 11.0 0.0 2.7 2 1 0 2 2 2 0 Nitronate monooxygenase His_biosynth PF00977.21 gi|212225042|ref|YP_002308278.1| - 0.062 12.8 0.6 0.63 9.5 0.0 2.3 2 0 0 2 2 2 0 Histidine biosynthesis protein SNO PF01174.19 gi|212225043|ref|YP_002308279.1| - 3.9e-60 202.9 0.0 4.4e-60 202.8 0.0 1.0 1 0 0 1 1 1 1 SNO glutamine amidotransferase family GATase_3 PF07685.14 gi|212225043|ref|YP_002308279.1| - 3.3e-10 39.9 0.0 3.5e-10 39.8 0.0 1.2 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain GATase PF00117.28 gi|212225043|ref|YP_002308279.1| - 1.3e-09 38.1 0.0 2.6e-09 37.1 0.0 1.5 1 1 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_S51 PF03575.17 gi|212225043|ref|YP_002308279.1| - 1.5e-06 28.0 0.0 2.1e-06 27.5 0.0 1.2 1 0 0 1 1 1 1 Peptidase family S51 DJ-1_PfpI PF01965.24 gi|212225043|ref|YP_002308279.1| - 9.6e-05 22.2 0.0 0.00014 21.7 0.0 1.2 1 0 0 1 1 1 1 DJ-1/PfpI family Peptidase_C26 PF07722.13 gi|212225043|ref|YP_002308279.1| - 0.31 10.8 1.6 4.6 6.9 0.3 2.7 2 1 0 2 2 2 0 Peptidase C26 Flot PF15975.5 gi|212225044|ref|YP_002308280.1| - 0.034 14.3 0.0 0.034 14.3 0.0 1.0 1 0 0 1 1 1 0 Flotillin Adeno_E1B_19K PF01691.16 gi|212225044|ref|YP_002308280.1| - 0.17 11.4 0.0 0.18 11.3 0.0 1.0 1 0 0 1 1 1 0 Adenovirus E1B 19K protein / small t-antigen GMP_synt_C PF00958.22 gi|212225045|ref|YP_002308281.1| - 1.6e-34 117.8 0.0 3e-34 117.0 0.0 1.4 1 0 0 1 1 1 1 GMP synthase C terminal domain NAD_synthase PF02540.17 gi|212225045|ref|YP_002308281.1| - 9.6e-14 51.1 0.0 2.5e-06 26.8 0.0 2.2 2 0 0 2 2 2 2 NAD synthase QueC PF06508.13 gi|212225045|ref|YP_002308281.1| - 6.6e-06 25.8 0.0 0.00096 18.7 0.0 2.2 1 1 0 1 1 1 1 Queuosine biosynthesis protein QueC tRNA_Me_trans PF03054.16 gi|212225045|ref|YP_002308281.1| - 2.2e-05 23.4 0.1 0.009 14.8 0.0 2.2 2 0 0 2 2 2 2 tRNA methyl transferase ThiI PF02568.14 gi|212225045|ref|YP_002308281.1| - 3.4e-05 23.5 0.0 0.00011 21.9 0.0 1.8 1 1 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) Asn_synthase PF00733.21 gi|212225045|ref|YP_002308281.1| - 0.0032 17.2 0.0 0.006 16.3 0.0 1.4 1 0 0 1 1 1 1 Asparagine synthase ATP_bind_3 PF01171.20 gi|212225045|ref|YP_002308281.1| - 0.024 14.4 0.0 0.054 13.3 0.0 1.6 1 1 0 1 1 1 0 PP-loop family PAPS_reduct PF01507.19 gi|212225045|ref|YP_002308281.1| - 0.041 13.9 0.0 0.074 13.1 0.0 1.5 1 0 0 1 1 1 0 Phosphoadenosine phosphosulfate reductase family GATase PF00117.28 gi|212225046|ref|YP_002308282.1| - 1.8e-45 155.0 0.0 2.2e-45 154.8 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|212225046|ref|YP_002308282.1| - 4.2e-14 52.8 0.1 3.4e-12 46.6 0.0 2.8 1 1 1 2 2 2 1 Peptidase C26 DUF2101 PF09874.9 gi|212225047|ref|YP_002308283.1| - 1.9e-75 253.1 10.9 2.2e-75 252.9 10.9 1.0 1 0 0 1 1 1 1 Predicted membrane protein (DUF2101) DUF2070 PF09843.9 gi|212225047|ref|YP_002308283.1| - 5.4 5.2 9.3 7.7 4.7 9.3 1.2 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) DUF2341 PF10102.9 gi|212225048|ref|YP_002308284.1| - 1.4e-13 51.2 11.0 3.3e-10 40.4 0.6 3.3 2 0 0 2 2 2 2 Domain of unknown function (DUF2341) Sox17_18_mid PF12067.8 gi|212225049|ref|YP_002308285.1| - 0.16 12.0 0.0 0.36 10.9 0.0 1.5 1 0 0 1 1 1 0 Sox 17/18 central domain Class_IIIsignal PF04021.12 gi|212225051|ref|YP_002308287.1| - 0.01 15.8 0.6 0.022 14.7 0.6 1.5 1 0 0 1 1 1 0 Class III signal peptide Class_IIIsignal PF04021.12 gi|212225053|ref|YP_002308289.1| - 1.1e-07 31.6 0.6 1.1e-07 31.6 0.6 2.0 2 0 0 2 2 2 1 Class III signal peptide TadF PF16964.5 gi|212225053|ref|YP_002308289.1| - 0.11 12.2 0.8 0.17 11.6 0.7 1.4 1 1 0 1 1 1 0 Putative tight adherence pilin protein F Ead_Ea22 PF13935.6 gi|212225054|ref|YP_002308290.1| - 0.078 13.6 0.3 0.12 13.0 0.3 1.3 1 0 0 1 1 1 0 Ead/Ea22-like protein Tubulin PF00091.25 gi|212225055|ref|YP_002308291.1| - 2.6e-28 99.6 0.1 1.3e-25 90.8 0.0 2.3 1 1 1 2 2 2 2 Tubulin/FtsZ family, GTPase domain DUF4172 PF13776.6 gi|212225055|ref|YP_002308291.1| - 0.13 12.6 0.0 18 5.8 0.0 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4172) SQHop_cyclase_N PF13249.6 gi|212225056|ref|YP_002308292.1| - 1e-14 54.3 1.4 0.00053 19.2 0.1 4.9 3 2 3 6 6 6 3 Squalene-hopene cyclase N-terminal domain SQHop_cyclase_C PF13243.6 gi|212225056|ref|YP_002308292.1| - 1.1e-14 54.3 3.7 3e-05 23.3 0.0 5.9 2 2 2 5 5 5 4 Squalene-hopene cyclase C-terminal domain Prenyltrans PF00432.21 gi|212225056|ref|YP_002308292.1| - 1.1e-12 47.4 1.9 0.00037 20.2 0.0 4.6 4 1 0 4 4 4 2 Prenyltransferase and squalene oxidase repeat Wyosine_form PF08608.12 gi|212225057|ref|YP_002308293.1| - 8.9e-23 80.4 0.1 1.9e-22 79.4 0.1 1.6 1 0 0 1 1 1 1 Wyosine base formation Radical_SAM PF04055.21 gi|212225057|ref|YP_002308293.1| - 3.2e-22 79.7 0.0 7.5e-22 78.5 0.0 1.7 1 1 0 1 1 1 1 Radical SAM superfamily AhpC-TSA PF00578.21 gi|212225057|ref|YP_002308293.1| - 0.026 14.4 0.0 0.066 13.1 0.0 1.7 1 0 0 1 1 1 0 AhpC/TSA family Fer4_12 PF13353.6 gi|212225057|ref|YP_002308293.1| - 0.069 13.4 2.1 0.24 11.7 1.0 2.3 2 1 0 2 2 2 0 4Fe-4S single cluster domain Hydrolase PF00702.26 gi|212225057|ref|YP_002308293.1| - 0.17 12.1 0.0 0.29 11.4 0.0 1.4 1 0 0 1 1 1 0 haloacid dehalogenase-like hydrolase MTS PF05175.14 gi|212225058|ref|YP_002308294.1| - 1.5e-19 70.2 0.0 1e-18 67.4 0.0 1.9 1 1 0 1 1 1 1 Methyltransferase small domain Methyltransf_31 PF13847.6 gi|212225058|ref|YP_002308294.1| - 9.8e-18 64.4 0.0 1.4e-17 63.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.13 gi|212225058|ref|YP_002308294.1| - 8.9e-13 48.3 0.5 4.2e-12 46.1 0.2 1.8 2 0 0 2 2 2 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_25 PF13649.6 gi|212225058|ref|YP_002308294.1| - 2.1e-12 47.6 0.0 3.7e-11 43.6 0.0 2.2 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|212225058|ref|YP_002308294.1| - 3.1e-10 40.5 0.0 1.7e-09 38.2 0.0 2.0 1 1 0 1 1 1 1 Methyltransferase domain Met_10 PF02475.16 gi|212225058|ref|YP_002308294.1| - 3.4e-08 33.5 0.1 5.2e-08 32.9 0.1 1.2 1 0 0 1 1 1 1 Met-10+ like-protein Ubie_methyltran PF01209.18 gi|212225058|ref|YP_002308294.1| - 8.2e-07 28.6 0.0 8.1e-06 25.3 0.0 1.9 2 0 0 2 2 2 1 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.12 gi|212225058|ref|YP_002308294.1| - 9.2e-07 29.5 0.0 1.2e-05 26.0 0.0 2.2 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|212225058|ref|YP_002308294.1| - 2.6e-06 27.4 0.0 1e-05 25.5 0.0 1.9 1 1 0 1 1 1 1 Methyltransferase domain PCMT PF01135.19 gi|212225058|ref|YP_002308294.1| - 1.5e-05 24.9 0.0 2.4e-05 24.2 0.0 1.4 2 0 0 2 2 2 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) CMAS PF02353.20 gi|212225058|ref|YP_002308294.1| - 0.00015 21.2 0.0 0.00049 19.5 0.0 1.7 1 1 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_18 PF12847.7 gi|212225058|ref|YP_002308294.1| - 0.00016 21.6 0.0 0.0003 20.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.18 gi|212225058|ref|YP_002308294.1| - 0.00068 19.4 0.0 0.0015 18.3 0.0 1.4 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_15 PF09445.10 gi|212225058|ref|YP_002308294.1| - 0.0018 17.9 0.0 0.0019 17.8 0.0 1.2 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase rRNA_methylase PF06962.12 gi|212225058|ref|YP_002308294.1| - 0.0028 17.6 0.0 0.014 15.4 0.0 2.0 1 1 1 2 2 2 1 Putative rRNA methylase Methyltransf_24 PF13578.6 gi|212225058|ref|YP_002308294.1| - 0.0036 18.3 0.0 0.0056 17.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_4 PF02390.17 gi|212225058|ref|YP_002308294.1| - 0.0048 16.4 0.2 0.13 11.7 0.1 2.1 2 0 0 2 2 2 1 Putative methyltransferase Cons_hypoth95 PF03602.15 gi|212225058|ref|YP_002308294.1| - 0.0094 15.6 0.0 0.018 14.7 0.0 1.4 2 0 0 2 2 2 1 Conserved hypothetical protein 95 N6_Mtase PF02384.16 gi|212225058|ref|YP_002308294.1| - 0.0097 15.2 0.0 0.016 14.5 0.0 1.3 1 0 0 1 1 1 1 N-6 DNA Methylase TRM PF02005.16 gi|212225058|ref|YP_002308294.1| - 0.012 14.8 0.0 0.017 14.3 0.0 1.2 1 0 0 1 1 1 0 N2,N2-dimethylguanosine tRNA methyltransferase tRNA_U5-meth_tr PF05958.11 gi|212225058|ref|YP_002308294.1| - 0.023 13.7 0.1 0.032 13.2 0.1 1.1 1 0 0 1 1 1 0 tRNA (Uracil-5-)-methyltransferase Methyltransf_8 PF05148.15 gi|212225058|ref|YP_002308294.1| - 0.032 14.1 0.0 0.37 10.6 0.0 2.0 1 1 1 2 2 2 0 Hypothetical methyltransferase DUF2431 PF10354.9 gi|212225058|ref|YP_002308294.1| - 0.038 14.3 0.0 0.047 14.0 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF2431) Peptidase_S8 PF00082.22 gi|212225059|ref|YP_002308295.1| - 1.1e-45 156.2 5.1 1.5e-45 155.7 5.1 1.1 1 0 0 1 1 1 1 Subtilase family Peptidase_S8 PF00082.22 gi|212225060|ref|YP_002308296.1| - 6.5e-49 166.8 4.6 9e-49 166.3 4.6 1.1 1 0 0 1 1 1 1 Subtilase family Ribosomal_S27 PF01599.19 gi|212225061|ref|YP_002308297.1| - 1.3e-22 79.7 2.8 1.4e-22 79.6 2.8 1.0 1 0 0 1 1 1 1 Ribosomal protein S27a Ribosomal_L37e PF01907.19 gi|212225061|ref|YP_002308297.1| - 0.0011 19.1 3.4 0.0014 18.8 3.4 1.3 1 0 0 1 1 1 1 Ribosomal protein L37e GFA PF04828.14 gi|212225061|ref|YP_002308297.1| - 0.0061 16.9 1.7 0.04 14.3 0.1 1.9 1 1 1 2 2 2 1 Glutathione-dependent formaldehyde-activating enzyme RNA_POL_M_15KD PF02150.16 gi|212225061|ref|YP_002308297.1| - 0.014 15.2 2.6 0.032 14.1 2.6 1.6 1 1 0 1 1 1 0 RNA polymerases M/15 Kd subunit zf-NADH-PPase PF09297.11 gi|212225061|ref|YP_002308297.1| - 0.016 14.9 0.4 0.016 14.9 0.4 2.5 3 0 0 3 3 3 0 NADH pyrophosphatase zinc ribbon domain OrfB_Zn_ribbon PF07282.11 gi|212225061|ref|YP_002308297.1| - 0.025 14.5 1.3 0.033 14.1 1.3 1.3 1 0 0 1 1 1 0 Putative transposase DNA-binding domain DZR PF12773.7 gi|212225061|ref|YP_002308297.1| - 0.027 14.5 2.2 0.059 13.4 2.2 1.5 1 1 0 1 1 1 0 Double zinc ribbon Zn_ribbon_SprT PF17283.2 gi|212225061|ref|YP_002308297.1| - 0.032 14.2 3.7 2 8.4 0.8 2.2 2 0 0 2 2 2 0 SprT-like zinc ribbon domain MqsA_antitoxin PF15731.5 gi|212225061|ref|YP_002308297.1| - 0.033 14.3 0.2 0.045 13.9 0.2 1.3 1 1 0 1 1 1 0 Antitoxin component of bacterial toxin-antitoxin system, MqsA Nudix_N_2 PF14803.6 gi|212225061|ref|YP_002308297.1| - 0.044 13.7 6.8 0.33 10.9 6.8 2.1 1 1 0 1 1 1 0 Nudix N-terminal Zn_Tnp_IS1595 PF12760.7 gi|212225061|ref|YP_002308297.1| - 0.049 13.6 5.3 0.087 12.8 5.1 1.5 1 1 1 2 2 2 0 Transposase zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|212225061|ref|YP_002308297.1| - 0.058 13.1 0.6 0.058 13.1 0.6 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zf_UBZ PF18439.1 gi|212225061|ref|YP_002308297.1| - 3.9 7.2 8.2 7.7 6.2 2.1 2.7 1 1 1 2 2 2 0 Ubiquitin-Binding Zinc Finger Ribosomal_S24e PF01282.19 gi|212225062|ref|YP_002308298.1| - 6.1e-27 93.4 0.1 7.9e-27 93.0 0.1 1.2 1 0 0 1 1 1 1 Ribosomal protein S24e DUF359 PF04019.12 gi|212225063|ref|YP_002308299.1| - 3.4e-39 133.4 0.0 4.5e-39 133.0 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF359) Spt4 PF06093.13 gi|212225064|ref|YP_002308300.1| - 1.2e-16 60.6 0.1 1.4e-16 60.4 0.1 1.1 1 0 0 1 1 1 1 Spt4/RpoE2 zinc finger RecR PF02132.15 gi|212225064|ref|YP_002308300.1| - 0.00079 18.9 3.5 0.0011 18.5 3.5 1.2 1 0 0 1 1 1 1 RecR protein Rad50_zn_hook PF04423.14 gi|212225064|ref|YP_002308300.1| - 0.011 15.6 0.1 0.2 11.5 0.2 2.1 2 0 0 2 2 2 0 Rad50 zinc hook motif PHF5 PF03660.14 gi|212225064|ref|YP_002308300.1| - 0.019 15.1 0.2 0.019 15.1 0.2 1.1 1 0 0 1 1 1 0 PHF5-like protein PolC_DP2 PF03833.13 gi|212225064|ref|YP_002308300.1| - 0.043 11.7 0.1 0.043 11.7 0.1 1.1 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 zf-ribbon_3 PF13248.6 gi|212225064|ref|YP_002308300.1| - 0.049 13.1 2.1 0.3 10.6 0.1 2.1 2 0 0 2 2 2 0 zinc-ribbon domain HypA PF01155.19 gi|212225064|ref|YP_002308300.1| - 0.049 13.6 0.4 0.059 13.4 0.4 1.2 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-RRN7 PF11781.8 gi|212225064|ref|YP_002308300.1| - 0.069 12.8 0.1 0.069 12.8 0.1 2.2 2 0 0 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 NRDD PF13597.6 gi|212225064|ref|YP_002308300.1| - 0.075 11.8 1.0 0.09 11.5 1.0 1.0 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase Prim_Zn_Ribbon PF08273.12 gi|212225064|ref|YP_002308300.1| - 0.19 12.1 0.8 0.19 12.1 0.8 2.1 1 1 1 2 2 2 0 Zinc-binding domain of primase-helicase DUF35_N PF12172.8 gi|212225064|ref|YP_002308300.1| - 0.37 10.7 6.7 0.83 9.6 6.7 1.5 1 1 0 1 1 1 0 Rubredoxin-like zinc ribbon domain (DUF35_N) SHS2_Rpb7-N PF03876.17 gi|212225065|ref|YP_002308301.1| - 1.1e-19 70.5 0.2 1.9e-19 69.8 0.2 1.4 1 0 0 1 1 1 1 SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397 S1 PF00575.23 gi|212225065|ref|YP_002308301.1| - 6.5e-16 58.4 0.7 1.8e-15 57.0 0.7 1.8 1 1 0 1 1 1 1 S1 RNA binding domain RNA_pol_Rbc25 PF08292.12 gi|212225065|ref|YP_002308301.1| - 0.033 14.4 0.2 0.066 13.5 0.2 1.6 1 1 0 1 1 1 0 RNA polymerase III subunit Rpc25 Pyrophosphatase PF00719.19 gi|212225066|ref|YP_002308302.1| - 8.7e-58 194.7 0.2 9.9e-58 194.5 0.2 1.0 1 0 0 1 1 1 1 Inorganic pyrophosphatase Saf_2TM PF18303.1 gi|212225069|ref|YP_002308305.1| - 0.0089 15.6 4.6 0.011 15.3 4.6 1.1 1 0 0 1 1 1 1 SAVED-fused 2TM effector domain TRP PF06011.12 gi|212225069|ref|YP_002308305.1| - 0.022 13.5 4.3 0.024 13.4 4.3 1.1 1 0 0 1 1 1 0 Transient receptor potential (TRP) ion channel DUF2371 PF10177.9 gi|212225069|ref|YP_002308305.1| - 0.041 14.1 0.8 0.041 14.1 0.8 2.0 1 1 1 2 2 2 0 Uncharacterised conserved protein (DUF2371) Phage_holin_3_6 PF07332.11 gi|212225069|ref|YP_002308305.1| - 0.061 13.4 8.4 0.069 13.2 8.4 1.1 1 0 0 1 1 1 0 Putative Actinobacterial Holin-X, holin superfamily III RseC_MucC PF04246.12 gi|212225069|ref|YP_002308305.1| - 0.11 12.4 4.7 0.12 12.3 4.7 1.1 1 0 0 1 1 1 0 Positive regulator of sigma(E), RseC/MucC DUF3392 PF11872.8 gi|212225069|ref|YP_002308305.1| - 0.15 12.3 6.2 0.2 11.9 6.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3392) TMEM100 PF16311.5 gi|212225069|ref|YP_002308305.1| - 0.3 10.7 1.9 0.35 10.5 1.9 1.1 1 0 0 1 1 1 0 Transmembrane protein 100 Sensor PF13796.6 gi|212225069|ref|YP_002308305.1| - 0.31 11.1 8.3 0.37 10.8 8.3 1.0 1 0 0 1 1 1 0 Putative sensor DUF2207 PF09972.9 gi|212225069|ref|YP_002308305.1| - 1.2 7.8 6.0 1.3 7.7 6.0 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) E1-E2_ATPase PF00122.20 gi|212225069|ref|YP_002308305.1| - 1.3 8.5 5.2 1.5 8.4 5.2 1.1 1 0 0 1 1 1 0 E1-E2 ATPase ABC2_membrane_3 PF12698.7 gi|212225069|ref|YP_002308305.1| - 2.8 7.0 9.1 3.1 6.8 9.1 1.0 1 0 0 1 1 1 0 ABC-2 family transporter protein OppC_N PF12911.7 gi|212225069|ref|YP_002308305.1| - 4.8 7.2 8.1 6.2 6.9 0.7 2.2 2 0 0 2 2 2 0 N-terminal TM domain of oligopeptide transport permease C Glycos_transf_2 PF00535.26 gi|212225070|ref|YP_002308306.1| - 7.5e-39 133.3 0.1 1.1e-38 132.7 0.1 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 GtrA PF04138.14 gi|212225070|ref|YP_002308306.1| - 5.5e-26 91.1 10.1 8.4e-26 90.5 10.1 1.3 1 0 0 1 1 1 1 GtrA-like protein Glyco_tranf_2_3 PF13641.6 gi|212225070|ref|YP_002308306.1| - 8.2e-14 52.0 0.0 1.3e-13 51.4 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.9 gi|212225070|ref|YP_002308306.1| - 0.0001 21.9 0.0 0.00014 21.4 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_transf_21 PF13506.6 gi|212225070|ref|YP_002308306.1| - 0.015 14.8 0.0 0.037 13.5 0.0 1.7 1 0 0 1 1 1 0 Glycosyl transferase family 21 Glyco_tranf_2_4 PF13704.6 gi|212225070|ref|YP_002308306.1| - 0.13 12.8 0.0 0.23 12.0 0.0 1.5 1 0 0 1 1 1 0 Glycosyl transferase family 2 PAP2 PF01569.21 gi|212225070|ref|YP_002308306.1| - 0.17 11.7 3.8 0.26 11.1 3.8 1.3 1 0 0 1 1 1 0 PAP2 superfamily Peptidase_M28 PF04389.17 gi|212225071|ref|YP_002308307.1| - 6.5e-18 65.1 0.0 1.2e-17 64.3 0.0 1.4 1 0 0 1 1 1 1 Peptidase family M28 DUF4910 PF16254.5 gi|212225071|ref|YP_002308307.1| - 1.7e-09 36.9 0.0 1.4e-08 34.0 0.0 2.0 2 0 0 2 2 2 1 Domain of unknown function (DUF4910) PA PF02225.22 gi|212225071|ref|YP_002308307.1| - 5e-07 29.6 0.0 1e-06 28.6 0.0 1.5 1 0 0 1 1 1 1 PA domain TrmB PF01978.19 gi|212225072|ref|YP_002308308.1| - 2.3e-10 40.2 0.7 4.7e-10 39.2 0.4 1.7 1 1 1 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 gi|212225072|ref|YP_002308308.1| - 2e-05 24.1 1.5 2e-05 24.1 1.5 3.0 4 0 0 4 4 4 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.10 gi|212225072|ref|YP_002308308.1| - 5.7e-05 22.8 0.6 0.00018 21.3 0.4 2.0 1 1 0 1 1 1 1 IclR helix-turn-helix domain HTH_11 PF08279.12 gi|212225072|ref|YP_002308308.1| - 8.6e-05 22.4 1.1 8.6e-05 22.4 1.1 1.8 2 0 0 2 2 2 1 HTH domain HTH_23 PF13384.6 gi|212225072|ref|YP_002308308.1| - 0.00078 19.2 1.2 0.0026 17.5 1.2 2.0 1 1 0 1 1 1 1 Homeodomain-like domain HTH_5 PF01022.20 gi|212225072|ref|YP_002308308.1| - 0.00095 19.0 1.2 0.0028 17.5 0.3 2.1 2 1 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|212225072|ref|YP_002308308.1| - 0.0011 19.0 1.9 0.0036 17.3 1.3 2.1 2 1 1 3 3 3 1 Helix-turn-helix domain LexA_DNA_bind PF01726.16 gi|212225072|ref|YP_002308308.1| - 0.0019 17.9 1.8 0.0039 16.9 0.2 2.2 3 0 0 3 3 3 1 LexA DNA binding domain TFIIE_alpha PF02002.17 gi|212225072|ref|YP_002308308.1| - 0.0041 16.9 2.7 0.0092 15.8 1.5 1.8 1 1 1 2 2 2 1 TFIIE alpha subunit MarR PF01047.22 gi|212225072|ref|YP_002308308.1| - 0.0051 16.7 0.4 0.0051 16.7 0.4 1.8 2 0 0 2 2 2 1 MarR family GerE PF00196.19 gi|212225072|ref|YP_002308308.1| - 0.0087 15.6 0.0 0.019 14.5 0.0 1.7 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family FaeA PF04703.12 gi|212225072|ref|YP_002308308.1| - 0.0088 16.4 0.9 0.019 15.3 0.2 1.9 2 1 0 2 2 2 1 FaeA-like protein MarR_2 PF12802.7 gi|212225072|ref|YP_002308308.1| - 0.014 15.3 0.7 0.036 14.0 0.5 1.8 1 1 0 1 1 1 0 MarR family HTH_Mga PF08280.11 gi|212225072|ref|YP_002308308.1| - 0.014 15.4 0.4 0.056 13.5 0.2 2.0 2 1 0 2 2 2 0 M protein trans-acting positive regulator (MGA) HTH domain HTH_28 PF13518.6 gi|212225072|ref|YP_002308308.1| - 0.021 14.9 0.4 0.047 13.8 0.4 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_40 PF14493.6 gi|212225072|ref|YP_002308308.1| - 0.03 14.8 0.2 0.049 14.1 0.2 1.4 1 1 0 1 1 1 0 Helix-turn-helix domain Rrf2 PF02082.20 gi|212225072|ref|YP_002308308.1| - 0.056 13.8 0.1 0.13 12.6 0.1 1.6 1 0 0 1 1 1 0 Transcriptional regulator GntR PF00392.21 gi|212225072|ref|YP_002308308.1| - 0.088 12.5 4.7 0.12 12.0 0.7 2.6 2 1 1 3 3 3 0 Bacterial regulatory proteins, gntR family RP-C PF03428.13 gi|212225072|ref|YP_002308308.1| - 0.096 12.3 0.8 1.6 8.4 0.8 2.2 1 1 0 1 1 1 0 Replication protein C N-terminal domain Phage_terminase PF10668.9 gi|212225072|ref|YP_002308308.1| - 0.14 12.2 0.0 0.27 11.3 0.0 1.4 1 0 0 1 1 1 0 Phage terminase small subunit HTH_36 PF13730.6 gi|212225072|ref|YP_002308308.1| - 0.21 11.6 0.2 0.21 11.6 0.2 3.0 3 1 1 4 4 4 0 Helix-turn-helix domain Metallophos PF00149.28 gi|212225073|ref|YP_002308309.1| - 9.2e-09 36.1 0.0 1.2e-08 35.7 0.0 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|212225073|ref|YP_002308309.1| - 6.2e-06 26.5 0.1 1.1e-05 25.7 0.1 1.4 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos_3 PF14582.6 gi|212225073|ref|YP_002308309.1| - 0.021 14.2 0.0 0.037 13.4 0.0 1.5 1 1 0 1 1 1 0 Metallophosphoesterase, calcineurin superfamily Ribosomal_L41 PF05162.13 gi|212225074|ref|YP_002308310.1| - 0.00023 21.1 17.9 0.00023 21.1 17.9 2.6 1 1 1 2 2 2 1 Ribosomal protein L41 CN_hydrolase PF00795.22 gi|212225075|ref|YP_002308311.1| - 2.3e-59 200.9 0.0 2.8e-59 200.6 0.0 1.0 1 0 0 1 1 1 1 Carbon-nitrogen hydrolase Methyltransf_25 PF13649.6 gi|212225077|ref|YP_002308313.1| - 2.2e-09 37.9 0.0 3.2e-09 37.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|212225077|ref|YP_002308313.1| - 0.00041 20.2 0.0 0.00052 19.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|212225077|ref|YP_002308313.1| - 0.0013 18.3 0.0 0.0025 17.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_18 PF12847.7 gi|212225077|ref|YP_002308313.1| - 0.05 13.5 0.0 0.09 12.7 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_16 PF10294.9 gi|212225077|ref|YP_002308313.1| - 0.16 11.7 0.0 0.24 11.1 0.0 1.2 1 0 0 1 1 1 0 Lysine methyltransferase PCMT PF01135.19 gi|212225077|ref|YP_002308313.1| - 0.23 11.2 0.0 0.73 9.5 0.0 1.7 2 0 0 2 2 2 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Sigma70_r4_2 PF08281.12 gi|212225079|ref|YP_002308315.1| - 1.5e-06 27.8 0.1 2.1e-06 27.3 0.1 1.3 1 0 0 1 1 1 1 Sigma-70, region 4 MarR_2 PF12802.7 gi|212225079|ref|YP_002308315.1| - 5.2e-05 23.1 0.4 0.0031 17.4 0.1 2.2 2 0 0 2 2 2 1 MarR family HTH_3 PF01381.22 gi|212225079|ref|YP_002308315.1| - 0.00029 20.8 0.0 0.00053 20.0 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix HTH_10 PF04967.12 gi|212225079|ref|YP_002308315.1| - 0.0003 20.5 0.0 0.00064 19.5 0.0 1.6 2 0 0 2 2 1 1 HTH DNA binding domain HTH_11 PF08279.12 gi|212225079|ref|YP_002308315.1| - 0.00054 19.9 0.0 0.0011 18.9 0.0 1.6 1 0 0 1 1 1 1 HTH domain HTH_23 PF13384.6 gi|212225079|ref|YP_002308315.1| - 0.0006 19.5 0.2 0.0011 18.7 0.2 1.3 1 0 0 1 1 1 1 Homeodomain-like domain Sigma70_ECF PF07638.11 gi|212225079|ref|YP_002308315.1| - 0.00079 19.4 0.2 0.0011 18.8 0.2 1.2 1 0 0 1 1 1 1 ECF sigma factor Sigma70_r4 PF04545.16 gi|212225079|ref|YP_002308315.1| - 0.00092 18.7 0.1 0.0014 18.1 0.1 1.3 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_38 PF13936.6 gi|212225079|ref|YP_002308315.1| - 0.0011 18.7 0.1 0.0022 17.7 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain GntR PF00392.21 gi|212225079|ref|YP_002308315.1| - 0.0025 17.4 0.4 0.0071 16.0 0.2 1.9 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family HTH_Crp_2 PF13545.6 gi|212225079|ref|YP_002308315.1| - 0.0034 17.3 0.0 0.0061 16.5 0.0 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_29 PF13551.6 gi|212225079|ref|YP_002308315.1| - 0.0035 17.3 0.1 0.0059 16.6 0.1 1.3 1 0 0 1 1 1 1 Winged helix-turn helix HTH_24 PF13412.6 gi|212225079|ref|YP_002308315.1| - 0.0037 16.8 0.2 0.0062 16.1 0.2 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_31 PF13560.6 gi|212225079|ref|YP_002308315.1| - 0.0096 16.3 0.3 0.015 15.6 0.3 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain RepB PF07506.11 gi|212225079|ref|YP_002308315.1| - 0.014 15.5 0.0 0.02 15.0 0.0 1.2 1 0 0 1 1 1 0 RepB plasmid partitioning protein GerE PF00196.19 gi|212225079|ref|YP_002308315.1| - 0.029 13.9 0.0 0.046 13.3 0.0 1.2 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family DUF134 PF02001.16 gi|212225079|ref|YP_002308315.1| - 0.03 14.9 0.0 0.2 12.2 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function DUF134 HTH_7 PF02796.15 gi|212225079|ref|YP_002308315.1| - 0.054 13.6 0.0 0.09 12.9 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase GcrA PF07750.11 gi|212225079|ref|YP_002308315.1| - 0.054 13.9 0.0 0.074 13.5 0.0 1.2 1 0 0 1 1 1 0 GcrA cell cycle regulator HTH_20 PF12840.7 gi|212225079|ref|YP_002308315.1| - 0.058 13.5 0.2 0.17 12.0 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain Pex14_N PF04695.13 gi|212225079|ref|YP_002308315.1| - 0.064 13.9 0.0 0.087 13.5 0.0 1.1 1 0 0 1 1 1 0 Peroxisomal membrane anchor protein (Pex14p) conserved region Cro PF09048.10 gi|212225079|ref|YP_002308315.1| - 0.079 13.0 0.0 0.13 12.4 0.0 1.4 1 0 0 1 1 1 0 Cro HTH_AsnC-type PF13404.6 gi|212225079|ref|YP_002308315.1| - 0.088 12.7 0.3 0.15 11.9 0.3 1.4 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain KORA PF16509.5 gi|212225079|ref|YP_002308315.1| - 0.094 13.0 0.0 0.14 12.4 0.0 1.4 1 0 0 1 1 1 0 TrfB plasmid transcriptional repressor TrmB PF01978.19 gi|212225079|ref|YP_002308315.1| - 0.094 12.6 0.1 0.5 10.3 0.0 2.0 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB DUF1323 PF07037.11 gi|212225079|ref|YP_002308315.1| - 0.13 12.7 0.0 0.25 11.8 0.0 1.5 1 0 0 1 1 1 0 Putative transcription regulator (DUF1323) HTH_35 PF13693.6 gi|212225079|ref|YP_002308315.1| - 0.17 11.9 0.0 0.24 11.5 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding DUF4574 PF15141.6 gi|212225080|ref|YP_002308316.1| - 0.013 15.4 0.4 0.15 12.0 0.0 2.4 2 1 1 3 3 3 0 Ubiquinol-cytochrome-c reductase complex assembly factor 3 AMP-binding_C PF13193.6 gi|212225080|ref|YP_002308316.1| - 0.15 13.1 0.2 0.27 12.3 0.2 1.4 1 0 0 1 1 1 0 AMP-binding enzyme C-terminal domain DUF1648 PF07853.11 gi|212225082|ref|YP_002308318.1| - 2.1e-16 59.3 0.2 2.1e-16 59.3 0.2 2.7 2 0 0 2 2 2 1 Protein of unknown function (DUF1648) SdpI PF13630.6 gi|212225082|ref|YP_002308318.1| - 2.7e-12 46.6 2.4 2.7e-12 46.6 2.4 3.4 4 1 0 4 4 4 1 SdpI/YhfL protein family L6_membrane PF05805.12 gi|212225082|ref|YP_002308318.1| - 0.13 11.9 2.6 0.24 11.0 0.2 2.2 2 0 0 2 2 2 0 L6 membrane protein DUF4131 PF13567.6 gi|212225082|ref|YP_002308318.1| - 0.93 9.1 0.0 0.93 9.1 0.0 3.1 2 1 1 3 3 3 0 Domain of unknown function (DUF4131) DHHC PF01529.20 gi|212225082|ref|YP_002308318.1| - 8.2 6.5 10.0 5.3 7.2 0.3 2.8 1 1 2 3 3 3 0 DHHC palmitoyltransferase PadR PF03551.14 gi|212225083|ref|YP_002308319.1| - 2.7e-23 81.7 0.7 4.3e-23 81.1 0.7 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_34 PF13601.6 gi|212225083|ref|YP_002308319.1| - 0.00052 20.1 0.0 0.0012 19.0 0.0 1.7 1 1 0 1 1 1 1 Winged helix DNA-binding domain DUF505 PF04458.12 gi|212225083|ref|YP_002308319.1| - 0.0039 15.6 0.1 0.0046 15.4 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF505) Replic_Relax PF13814.6 gi|212225083|ref|YP_002308319.1| - 0.008 16.3 0.0 0.011 15.8 0.0 1.3 1 1 0 1 1 1 1 Replication-relaxation TrmB PF01978.19 gi|212225083|ref|YP_002308319.1| - 0.013 15.4 0.4 0.049 13.5 0.4 2.1 1 1 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HxlR PF01638.17 gi|212225083|ref|YP_002308319.1| - 0.068 13.0 0.0 0.11 12.3 0.0 1.6 1 1 0 1 1 1 0 HxlR-like helix-turn-helix HTH_27 PF13463.6 gi|212225083|ref|YP_002308319.1| - 0.093 13.2 0.3 0.24 11.9 0.0 2.0 2 1 0 2 2 2 0 Winged helix DNA-binding domain DUF562 PF04763.12 gi|212225083|ref|YP_002308319.1| - 0.19 11.2 0.1 0.27 10.7 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF562) YhfC PF10086.9 gi|212225084|ref|YP_002308320.1| - 2.1e-15 56.7 14.4 5.1e-08 32.6 0.2 2.1 1 1 1 2 2 2 2 YhfC intramembrane metalloprotease YbjQ_1 PF01906.17 gi|212225085|ref|YP_002308321.1| - 1.7e-34 118.6 5.1 1.9e-34 118.4 5.1 1.0 1 0 0 1 1 1 1 Putative heavy-metal-binding ATP-synt_ab PF00006.25 gi|212225085|ref|YP_002308321.1| - 0.052 13.2 0.2 0.052 13.2 0.2 1.1 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain Diphthamide_syn PF01866.17 gi|212225086|ref|YP_002308322.1| - 1.8e-77 260.8 0.0 2.2e-77 260.5 0.0 1.0 1 0 0 1 1 1 1 Putative diphthamide synthesis protein Fe-ADH PF00465.19 gi|212225086|ref|YP_002308322.1| - 0.0013 17.6 0.4 0.31 9.8 0.0 2.7 3 0 0 3 3 3 2 Iron-containing alcohol dehydrogenase Catalase_C PF18011.1 gi|212225086|ref|YP_002308322.1| - 0.0018 18.0 0.0 1.1 8.9 0.0 2.2 2 0 0 2 2 2 2 C-terminal domain found in long catalases DUF2007 PF09413.10 gi|212225086|ref|YP_002308322.1| - 0.0037 17.4 0.8 1.3 9.3 0.0 3.2 3 0 0 3 3 3 1 Putative prokaryotic signal transducing protein DUF1847 PF08901.11 gi|212225086|ref|YP_002308322.1| - 0.05 13.2 0.7 0.91 9.2 0.0 2.7 3 0 0 3 3 3 0 Protein of unknown function (DUF1847) PrpR_N PF06506.11 gi|212225086|ref|YP_002308322.1| - 0.062 12.9 0.3 0.41 10.2 0.0 2.4 2 1 1 3 3 3 0 Propionate catabolism activator HAD_2 PF13419.6 gi|212225086|ref|YP_002308322.1| - 0.069 13.2 0.0 0.14 12.2 0.0 1.5 1 0 0 1 1 1 0 Haloacid dehalogenase-like hydrolase DAGK_cat PF00781.24 gi|212225086|ref|YP_002308322.1| - 0.11 12.1 0.2 0.48 10.0 0.1 2.0 2 0 0 2 2 2 0 Diacylglycerol kinase catalytic domain Hydrolase_6 PF13344.6 gi|212225086|ref|YP_002308322.1| - 0.21 11.7 1.2 6.3 7.0 0.0 3.1 3 1 0 3 3 3 0 Haloacid dehalogenase-like hydrolase MTS PF05175.14 gi|212225087|ref|YP_002308323.1| - 1.9e-15 56.8 0.0 2.6e-15 56.4 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase small domain PrmA PF06325.13 gi|212225087|ref|YP_002308323.1| - 1.1e-12 47.9 0.1 1.5e-12 47.6 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Cons_hypoth95 PF03602.15 gi|212225087|ref|YP_002308323.1| - 4e-10 39.6 0.0 5.5e-10 39.2 0.0 1.2 1 0 0 1 1 1 1 Conserved hypothetical protein 95 UPF0020 PF01170.18 gi|212225087|ref|YP_002308323.1| - 8.8e-10 38.6 0.0 1.6e-09 37.8 0.0 1.4 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_31 PF13847.6 gi|212225087|ref|YP_002308323.1| - 2.1e-09 37.4 0.0 2.7e-09 37.0 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|212225087|ref|YP_002308323.1| - 1.6e-08 35.2 0.2 4.5e-08 33.7 0.1 1.8 1 1 1 2 2 2 1 Methyltransferase domain Met_10 PF02475.16 gi|212225087|ref|YP_002308323.1| - 1.4e-07 31.5 0.1 2.6e-07 30.6 0.0 1.4 1 1 0 1 1 1 1 Met-10+ like-protein Methyltransf_18 PF12847.7 gi|212225087|ref|YP_002308323.1| - 1.4e-06 28.3 0.1 2.2e-06 27.7 0.1 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|212225087|ref|YP_002308323.1| - 2.3e-05 25.0 0.0 5.9e-05 23.6 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_15 PF09445.10 gi|212225087|ref|YP_002308323.1| - 0.00014 21.5 0.0 0.00018 21.1 0.0 1.2 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_12 PF08242.12 gi|212225087|ref|YP_002308323.1| - 0.0014 19.3 0.0 0.0022 18.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain DNA_methylase PF00145.17 gi|212225087|ref|YP_002308323.1| - 0.0032 16.9 0.0 0.0048 16.3 0.0 1.1 1 0 0 1 1 1 1 C-5 cytosine-specific DNA methylase DUF43 PF01861.16 gi|212225087|ref|YP_002308323.1| - 0.0048 16.2 0.0 0.0065 15.7 0.0 1.2 1 0 0 1 1 1 1 Branched-chain polyamine synthase A C-terminal domain CMAS PF02353.20 gi|212225087|ref|YP_002308323.1| - 0.022 14.1 0.0 0.036 13.4 0.0 1.3 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase Methyltransf_3 PF01596.17 gi|212225087|ref|YP_002308323.1| - 0.038 13.1 0.0 0.046 12.9 0.0 1.1 1 0 0 1 1 1 0 O-methyltransferase Methyltransf_32 PF13679.6 gi|212225087|ref|YP_002308323.1| - 0.043 13.8 0.0 0.058 13.4 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain N6_Mtase PF02384.16 gi|212225087|ref|YP_002308323.1| - 0.044 13.0 0.0 0.068 12.4 0.0 1.2 1 0 0 1 1 1 0 N-6 DNA Methylase RrnaAD PF00398.20 gi|212225087|ref|YP_002308323.1| - 0.052 12.6 0.0 0.075 12.1 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase Spermine_synth PF01564.17 gi|212225087|ref|YP_002308323.1| - 0.17 11.2 0.0 0.22 10.9 0.0 1.2 1 0 0 1 1 1 0 Spermine/spermidine synthase domain AviRa PF11599.8 gi|212225087|ref|YP_002308323.1| - 0.22 10.9 0.0 2.6 7.4 0.0 2.0 1 1 1 2 2 2 0 RRNA methyltransferase AviRa Adaptin_N PF01602.20 gi|212225088|ref|YP_002308324.1| - 0.00029 19.5 0.1 0.0014 17.3 0.1 1.9 1 1 0 2 2 2 1 Adaptin N terminal region V-ATPase_H_C PF11698.8 gi|212225088|ref|YP_002308324.1| - 0.0045 17.1 0.1 0.012 15.8 0.1 1.7 2 0 0 2 2 2 1 V-ATPase subunit H RIX1 PF08167.12 gi|212225088|ref|YP_002308324.1| - 0.0053 16.5 0.4 0.014 15.1 0.1 1.8 2 0 0 2 2 2 1 rRNA processing/ribosome biogenesis UNC45-central PF11701.8 gi|212225088|ref|YP_002308324.1| - 0.03 14.3 0.0 0.07 13.1 0.0 1.6 1 0 0 1 1 1 0 Myosin-binding striated muscle assembly central RTP1_C1 PF10363.9 gi|212225088|ref|YP_002308324.1| - 0.048 13.8 0.4 3.8 7.7 0.0 2.3 1 1 1 2 2 2 0 Required for nuclear transport of RNA pol II C-terminus 1 SIL1 PF16782.5 gi|212225088|ref|YP_002308324.1| - 0.06 12.6 0.2 0.089 12.0 0.2 1.2 1 0 0 1 1 1 0 Nucleotide exchange factor SIL1 ParcG PF10274.9 gi|212225088|ref|YP_002308324.1| - 0.16 12.1 0.1 0.29 11.2 0.1 1.4 1 0 0 1 1 1 0 Parkin co-regulated protein MMS19_N PF14500.6 gi|212225088|ref|YP_002308324.1| - 0.2 11.2 0.3 2.3 7.7 0.3 2.2 1 1 0 1 1 1 0 Dos2-interacting transcription regulator of RNA-Pol-II HEAT_2 PF13646.6 gi|212225089|ref|YP_002308325.1| - 3.6e-10 40.1 1.3 1.6e-06 28.4 0.0 2.7 2 1 1 3 3 3 2 HEAT repeats Arm PF00514.23 gi|212225089|ref|YP_002308325.1| - 0.00019 21.3 1.2 0.39 10.8 0.0 3.7 5 0 0 5 5 5 2 Armadillo/beta-catenin-like repeat Adaptin_N PF01602.20 gi|212225089|ref|YP_002308325.1| - 0.00047 18.9 2.3 0.054 12.1 0.3 2.2 1 1 1 2 2 2 2 Adaptin N terminal region RasGEF_N_2 PF14663.6 gi|212225089|ref|YP_002308325.1| - 0.035 14.5 0.4 1 9.8 0.1 2.5 2 1 0 2 2 2 0 Rapamycin-insensitive companion of mTOR RasGEF_N domain DCB PF16213.5 gi|212225089|ref|YP_002308325.1| - 0.044 13.4 0.3 0.28 10.8 0.1 2.0 2 0 0 2 2 2 0 Dimerisation and cyclophilin-binding domain of Mon2 HEAT_EZ PF13513.6 gi|212225089|ref|YP_002308325.1| - 0.063 13.8 2.4 15 6.2 0.0 3.7 4 2 2 6 6 6 0 HEAT-like repeat ParcG PF10274.9 gi|212225089|ref|YP_002308325.1| - 0.074 13.2 0.4 0.25 11.4 0.1 2.0 1 1 1 2 2 2 0 Parkin co-regulated protein MGDG_synth PF06925.11 gi|212225089|ref|YP_002308325.1| - 0.08 13.1 0.0 0.12 12.5 0.0 1.4 1 0 0 1 1 1 0 Monogalactosyldiacylglycerol (MGDG) synthase HEAT PF02985.22 gi|212225089|ref|YP_002308325.1| - 0.093 13.0 1.5 83 3.9 0.0 4.2 5 0 0 5 5 5 0 HEAT repeat Methyltr_RsmB-F PF01189.17 gi|212225090|ref|YP_002308326.1| - 8.6e-65 218.1 0.0 1.3e-64 217.5 0.0 1.3 1 0 0 1 1 1 1 16S rRNA methyltransferase RsmB/F Methyltransf_31 PF13847.6 gi|212225090|ref|YP_002308326.1| - 5.5e-10 39.2 0.0 1.1e-09 38.2 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltr_RsmF_N PF17125.5 gi|212225090|ref|YP_002308326.1| - 2.5e-09 37.5 0.0 5.4e-09 36.4 0.0 1.6 1 0 0 1 1 1 1 N-terminal domain of 16S rRNA methyltransferase RsmF FtsJ PF01728.19 gi|212225090|ref|YP_002308326.1| - 2.1e-07 31.2 0.0 3.4e-07 30.5 0.0 1.3 1 0 0 1 1 1 1 FtsJ-like methyltransferase Methyltransf_25 PF13649.6 gi|212225090|ref|YP_002308326.1| - 0.00013 22.6 0.1 0.0026 18.4 0.0 2.5 2 0 0 2 2 2 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|212225090|ref|YP_002308326.1| - 0.00015 21.2 0.0 0.0019 17.5 0.0 2.1 2 0 0 2 2 2 1 ubiE/COQ5 methyltransferase family MTS PF05175.14 gi|212225090|ref|YP_002308326.1| - 0.0021 17.6 0.0 0.062 12.8 0.0 2.1 1 1 0 1 1 1 1 Methyltransferase small domain NusB PF01029.18 gi|212225090|ref|YP_002308326.1| - 0.023 14.9 0.0 0.056 13.7 0.0 1.7 1 0 0 1 1 1 0 NusB family Methyltransf_11 PF08241.12 gi|212225090|ref|YP_002308326.1| - 0.03 14.9 0.0 3.3 8.4 0.0 2.5 2 0 0 2 2 2 0 Methyltransferase domain Fibrillarin PF01269.17 gi|212225090|ref|YP_002308326.1| - 0.045 12.9 0.0 0.072 12.2 0.0 1.2 1 0 0 1 1 1 0 Fibrillarin Methyltransf_23 PF13489.6 gi|212225090|ref|YP_002308326.1| - 0.084 12.7 0.0 2 8.2 0.0 2.3 1 1 0 1 1 1 0 Methyltransferase domain PCMT PF01135.19 gi|212225090|ref|YP_002308326.1| - 0.14 11.8 0.0 0.31 10.8 0.0 1.4 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_5 PF01795.19 gi|212225090|ref|YP_002308326.1| - 0.16 11.5 0.0 1.9 8.0 0.0 2.3 3 0 0 3 3 3 0 MraW methylase family DUF3801 PF12687.7 gi|212225090|ref|YP_002308326.1| - 0.19 11.8 0.0 0.35 10.9 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3801) MS_channel PF00924.18 gi|212225091|ref|YP_002308327.1| - 1.1e-60 204.7 1.0 1.1e-60 204.7 1.0 1.6 2 0 0 2 2 2 1 Mechanosensitive ion channel DUF3382 PF11862.8 gi|212225091|ref|YP_002308327.1| - 4.1 7.8 6.9 0.82 10.0 0.2 2.7 2 1 1 3 3 3 0 Domain of unknown function (DUF3382) DUF432 PF04254.13 gi|212225092|ref|YP_002308328.1| - 1.6e-25 89.7 0.0 2.2e-25 89.2 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF432) DUF5616 PF18481.1 gi|212225093|ref|YP_002308329.1| - 1.3e-39 135.7 0.0 1.9e-39 135.2 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF5616) DUF434 PF04256.12 gi|212225093|ref|YP_002308329.1| - 8.2e-23 79.9 0.9 2.4e-22 78.3 1.0 1.7 2 0 0 2 2 2 1 Protein of unknown function (DUF434) HD PF01966.22 gi|212225094|ref|YP_002308330.1| - 9.6e-05 22.6 0.2 0.00025 21.3 0.1 1.8 1 1 1 2 2 2 1 HD domain PIN_9 PF18477.1 gi|212225095|ref|YP_002308331.1| - 8.9e-34 116.3 0.1 1e-33 116.1 0.1 1.0 1 0 0 1 1 1 1 PIN like domain Fcf1 PF04900.12 gi|212225095|ref|YP_002308331.1| - 3.6e-07 30.5 0.0 4.8e-07 30.1 0.0 1.1 1 0 0 1 1 1 1 Fcf1 PIN_4 PF13638.6 gi|212225095|ref|YP_002308331.1| - 8.5e-07 29.3 0.6 0.00012 22.4 0.6 2.2 1 1 0 1 1 1 1 PIN domain DUF5615 PF18480.1 gi|212225095|ref|YP_002308331.1| - 0.018 14.8 0.0 0.029 14.1 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF5615) XisI PF08869.11 gi|212225095|ref|YP_002308331.1| - 0.05 14.0 0.0 0.064 13.6 0.0 1.1 1 0 0 1 1 1 0 XisI protein PIN_12 PF16289.5 gi|212225095|ref|YP_002308331.1| - 0.069 13.6 0.7 0.36 11.3 0.1 2.0 2 0 0 2 2 2 0 PIN domain GTP_EFTU PF00009.27 gi|212225096|ref|YP_002308332.1| - 1.3e-37 129.2 0.7 8.1e-37 126.6 0.7 1.9 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain eIF2_C PF09173.11 gi|212225096|ref|YP_002308332.1| - 1.8e-31 108.2 0.2 4.6e-31 106.9 0.2 1.8 1 0 0 1 1 1 1 Initiation factor eIF2 gamma, C terminal GTP_EFTU_D2 PF03144.25 gi|212225096|ref|YP_002308332.1| - 3.2e-11 43.4 1.8 1e-10 41.8 1.8 1.9 1 0 0 1 1 1 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 gi|212225096|ref|YP_002308332.1| - 3.6e-06 27.1 0.0 6.1e-06 26.3 0.0 1.4 1 0 0 1 1 1 1 50S ribosome-binding GTPase RsgA_GTPase PF03193.16 gi|212225096|ref|YP_002308332.1| - 0.00034 20.6 0.1 0.0045 16.9 0.0 2.2 2 0 0 2 2 2 1 RsgA GTPase Nop10p PF04135.12 gi|212225096|ref|YP_002308332.1| - 0.00061 19.8 0.4 0.0011 19.0 0.4 1.3 1 0 0 1 1 1 1 Nucleolar RNA-binding protein, Nop10p family RecR PF02132.15 gi|212225096|ref|YP_002308332.1| - 0.00075 19.0 0.5 0.0014 18.2 0.5 1.4 1 0 0 1 1 1 1 RecR protein PduV-EutP PF10662.9 gi|212225096|ref|YP_002308332.1| - 0.002 17.9 0.4 0.44 10.3 0.0 2.3 2 0 0 2 2 2 1 Ethanolamine utilisation - propanediol utilisation zf-ribbon_3 PF13248.6 gi|212225096|ref|YP_002308332.1| - 0.003 16.9 3.2 0.0067 15.8 3.2 1.6 1 0 0 1 1 1 1 zinc-ribbon domain PolC_DP2 PF03833.13 gi|212225096|ref|YP_002308332.1| - 0.004 15.1 0.0 0.0053 14.7 0.0 1.1 1 0 0 1 1 1 1 DNA polymerase II large subunit DP2 FeoB_N PF02421.18 gi|212225096|ref|YP_002308332.1| - 0.011 15.3 0.8 1.7 8.1 0.1 2.4 2 0 0 2 2 2 0 Ferrous iron transport protein B DUF35_N PF12172.8 gi|212225096|ref|YP_002308332.1| - 0.011 15.6 1.9 0.02 14.8 1.9 1.5 1 0 0 1 1 1 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zinc_ribbon_2 PF13240.6 gi|212225096|ref|YP_002308332.1| - 0.012 15.3 5.1 0.028 14.1 5.1 1.7 1 0 0 1 1 1 0 zinc-ribbon domain G-alpha PF00503.20 gi|212225096|ref|YP_002308332.1| - 0.09 11.9 0.3 0.15 11.2 0.1 1.4 2 0 0 2 2 2 0 G-protein alpha subunit zf-NADH-PPase PF09297.11 gi|212225096|ref|YP_002308332.1| - 0.11 12.1 3.7 0.78 9.5 0.1 2.3 1 1 1 2 2 2 0 NADH pyrophosphatase zinc ribbon domain HypA PF01155.19 gi|212225096|ref|YP_002308332.1| - 0.12 12.4 0.0 0.3 11.1 0.0 1.6 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA NRDD PF13597.6 gi|212225096|ref|YP_002308332.1| - 0.22 10.2 0.2 0.36 9.6 0.2 1.3 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase Zn-ribbon_8 PF09723.10 gi|212225096|ref|YP_002308332.1| - 0.53 10.5 3.5 7.8 6.7 0.2 2.5 1 1 2 3 3 3 0 Zinc ribbon domain zf-RING_7 PF02591.15 gi|212225096|ref|YP_002308332.1| - 0.64 10.3 3.9 2.8 8.2 0.1 2.7 2 0 0 2 2 2 0 C4-type zinc ribbon domain zf-tcix PF14952.6 gi|212225096|ref|YP_002308332.1| - 0.91 9.2 4.3 0.32 10.6 0.2 2.0 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding Cys_rich_CPXG PF14255.6 gi|212225096|ref|YP_002308332.1| - 0.92 9.5 2.9 1.1 9.2 0.2 2.2 2 0 0 2 2 2 0 Cysteine-rich CPXCG UPF0547 PF10571.9 gi|212225096|ref|YP_002308332.1| - 1.5 9.0 5.7 5.1 7.3 0.8 2.5 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Zn_Tnp_IS1595 PF12760.7 gi|212225096|ref|YP_002308332.1| - 2.4 8.2 4.9 3.2 7.8 0.4 2.3 1 1 1 2 2 2 0 Transposase zinc-ribbon domain TF_Zn_Ribbon PF08271.12 gi|212225096|ref|YP_002308332.1| - 5.2 6.7 5.5 1.4e+02 2.1 5.6 2.3 1 1 0 1 1 1 0 TFIIB zinc-binding Ribosomal_S6e PF01092.19 gi|212225097|ref|YP_002308333.1| - 9.5e-39 132.2 0.2 4.4e-38 130.1 0.2 1.8 1 1 0 1 1 1 1 Ribosomal protein S6e Sec61_beta PF03911.16 gi|212225098|ref|YP_002308334.1| - 5.5e-15 55.1 0.1 6.3e-15 54.9 0.1 1.1 1 0 0 1 1 1 1 Sec61beta family UPF0242 PF06785.11 gi|212225099|ref|YP_002308335.1| - 1.6e-05 25.1 4.8 2e-05 24.8 4.8 1.2 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0242) N-terminus GAS PF13851.6 gi|212225099|ref|YP_002308335.1| - 0.00035 20.0 14.9 0.00048 19.5 14.9 1.2 1 0 0 1 1 1 1 Growth-arrest specific micro-tubule binding KASH_CCD PF14662.6 gi|212225099|ref|YP_002308335.1| - 0.0012 18.7 14.6 0.0026 17.6 14.6 1.5 1 1 0 1 1 1 1 Coiled-coil region of CCDC155 or KASH Taxilin PF09728.9 gi|212225099|ref|YP_002308335.1| - 0.0028 16.9 9.3 0.0042 16.3 9.3 1.3 1 0 0 1 1 1 1 Myosin-like coiled-coil protein FTA4 PF13093.6 gi|212225099|ref|YP_002308335.1| - 0.0054 16.6 1.9 0.0066 16.4 1.9 1.2 1 0 0 1 1 1 1 Kinetochore complex Fta4 of Sim4 subunit, or CENP-50 GIT_CC PF16559.5 gi|212225099|ref|YP_002308335.1| - 0.0089 15.9 3.2 0.0089 15.9 3.2 2.6 2 1 1 3 3 2 1 GIT coiled-coil Rho guanine nucleotide exchange factor NAPRTase_N PF17767.1 gi|212225099|ref|YP_002308335.1| - 0.017 15.5 1.1 0.038 14.4 0.8 1.8 2 0 0 2 2 1 0 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain Baculo_PEP_C PF04513.12 gi|212225099|ref|YP_002308335.1| - 0.025 14.6 2.1 0.1 12.6 1.3 2.0 1 1 1 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus DDE_Tnp_ISL3 PF01610.17 gi|212225099|ref|YP_002308335.1| - 0.048 13.4 1.6 0.067 12.9 1.6 1.1 1 0 0 1 1 1 0 Transposase CENP-H PF05837.12 gi|212225099|ref|YP_002308335.1| - 0.049 14.0 8.4 0.06 13.8 7.9 1.4 1 1 0 1 1 1 0 Centromere protein H (CENP-H) Phage_GP20 PF06810.11 gi|212225099|ref|YP_002308335.1| - 0.05 13.4 15.9 0.19 11.5 2.6 2.5 2 1 1 3 3 2 0 Phage minor structural protein GP20 USP8_interact PF08941.10 gi|212225099|ref|YP_002308335.1| - 0.051 13.4 3.0 0.049 13.4 1.0 1.8 1 1 1 2 2 2 0 USP8 interacting SlyX PF04102.12 gi|212225099|ref|YP_002308335.1| - 0.056 14.1 10.9 0.058 14.0 2.4 3.0 1 1 1 2 2 2 0 SlyX Spc7 PF08317.11 gi|212225099|ref|YP_002308335.1| - 0.064 12.1 14.9 0.089 11.7 14.9 1.1 1 0 0 1 1 1 0 Spc7 kinetochore protein SIKE PF05769.11 gi|212225099|ref|YP_002308335.1| - 0.065 13.2 9.2 0.1 12.5 9.2 1.3 1 0 0 1 1 1 0 SIKE family PRC PF05239.16 gi|212225099|ref|YP_002308335.1| - 0.068 13.3 2.0 0.21 11.7 2.0 1.8 1 1 0 1 1 1 0 PRC-barrel domain Csm1_N PF18504.1 gi|212225099|ref|YP_002308335.1| - 0.11 12.9 11.0 0.18 12.2 8.6 2.4 1 1 1 2 2 2 0 Csm1 N-terminal domain Exonuc_VII_L PF02601.15 gi|212225099|ref|YP_002308335.1| - 0.11 12.0 1.4 0.14 11.7 1.4 1.1 1 0 0 1 1 1 0 Exonuclease VII, large subunit DUF3450 PF11932.8 gi|212225099|ref|YP_002308335.1| - 0.16 11.3 9.3 0.087 12.1 6.4 1.7 1 1 1 2 2 2 0 Protein of unknown function (DUF3450) Fmp27_WPPW PF10359.9 gi|212225099|ref|YP_002308335.1| - 0.17 10.7 6.4 0.23 10.2 6.4 1.3 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain Prominin PF05478.11 gi|212225099|ref|YP_002308335.1| - 0.23 9.4 4.2 0.31 9.0 4.2 1.1 1 0 0 1 1 1 0 Prominin TolA_bind_tri PF16331.5 gi|212225099|ref|YP_002308335.1| - 0.23 11.6 11.7 0.93 9.6 9.0 2.5 1 1 1 2 2 2 0 TolA binding protein trimerisation DUF1664 PF07889.12 gi|212225099|ref|YP_002308335.1| - 0.26 11.3 5.9 0.4 10.7 3.8 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF1664) HAUS6_N PF14661.6 gi|212225099|ref|YP_002308335.1| - 0.27 10.8 5.9 0.36 10.4 5.6 1.4 1 1 0 1 1 1 0 HAUS augmin-like complex subunit 6 N-terminus TMPIT PF07851.13 gi|212225099|ref|YP_002308335.1| - 0.34 10.1 4.2 0.48 9.6 4.2 1.3 1 0 0 1 1 1 0 TMPIT-like protein FlaC_arch PF05377.11 gi|212225099|ref|YP_002308335.1| - 0.43 11.0 11.7 1.7 9.1 0.4 3.0 2 1 0 3 3 2 0 Flagella accessory protein C (FlaC) DHR10 PF18595.1 gi|212225099|ref|YP_002308335.1| - 0.44 10.6 17.4 0.13 12.3 12.5 2.1 1 1 1 2 2 2 0 Designed helical repeat protein 10 domain NPV_P10 PF05531.12 gi|212225099|ref|YP_002308335.1| - 0.44 11.0 9.1 1.3 9.5 0.5 2.9 1 1 2 3 3 3 0 Nucleopolyhedrovirus P10 protein Sec34 PF04136.15 gi|212225099|ref|YP_002308335.1| - 0.47 10.3 7.1 1.1 9.1 4.4 1.9 1 1 0 2 2 2 0 Sec34-like family XkdW PF09636.10 gi|212225099|ref|YP_002308335.1| - 0.71 10.0 6.2 1.7 8.8 2.8 2.3 2 0 0 2 2 2 0 XkdW protein Pup PF05639.11 gi|212225099|ref|YP_002308335.1| - 0.92 10.5 3.7 0.61 11.0 1.0 2.0 1 1 1 2 2 2 0 Pup-like protein Rootletin PF15035.6 gi|212225099|ref|YP_002308335.1| - 1.2 9.2 11.5 6.8 6.7 10.8 2.0 1 1 1 2 2 2 0 Ciliary rootlet component, centrosome cohesion bZIP_1 PF00170.21 gi|212225099|ref|YP_002308335.1| - 1.5 9.0 9.2 11 6.3 7.3 2.9 1 1 0 2 2 2 0 bZIP transcription factor TMF_TATA_bd PF12325.8 gi|212225099|ref|YP_002308335.1| - 1.9 8.7 16.3 5 7.4 15.8 1.9 1 1 0 1 1 1 0 TATA element modulatory factor 1 TATA binding DASH_Dad1 PF08649.10 gi|212225099|ref|YP_002308335.1| - 2.1 8.6 5.1 2.3 8.5 0.9 2.6 2 1 1 3 3 2 0 DASH complex subunit Dad1 Fzo_mitofusin PF04799.13 gi|212225099|ref|YP_002308335.1| - 2.7 7.5 7.5 2 7.9 5.5 1.7 1 1 0 1 1 1 0 fzo-like conserved region Swi5 PF07061.11 gi|212225099|ref|YP_002308335.1| - 3.1 8.0 10.0 6 7.0 3.6 2.6 1 1 1 2 2 2 0 Swi5 PCRF PF03462.18 gi|212225099|ref|YP_002308335.1| - 3.5 7.5 10.3 8.4 6.2 7.9 2.4 2 1 0 2 2 2 0 PCRF domain APG6_N PF17675.1 gi|212225099|ref|YP_002308335.1| - 3.8 8.1 16.7 5.1 7.6 14.8 1.8 1 1 1 2 2 2 0 Apg6 coiled-coil region Sod_Ni PF09055.11 gi|212225099|ref|YP_002308335.1| - 3.8 8.1 5.4 8.5 6.9 1.7 2.2 1 1 1 2 2 2 0 Nickel-containing superoxide dismutase Ead_Ea22 PF13935.6 gi|212225099|ref|YP_002308335.1| - 4.5 7.9 9.0 2e+02 2.6 9.0 2.2 1 1 0 1 1 1 0 Ead/Ea22-like protein Fib_alpha PF08702.10 gi|212225099|ref|YP_002308335.1| - 4.6 7.4 8.3 5.5 7.2 5.7 1.6 1 1 1 2 2 2 0 Fibrinogen alpha/beta chain family ATG16 PF08614.11 gi|212225099|ref|YP_002308335.1| - 4.7 7.4 16.2 0.56 10.4 6.9 2.0 1 1 1 2 2 2 0 Autophagy protein 16 (ATG16) DUF4795 PF16043.5 gi|212225099|ref|YP_002308335.1| - 9 5.8 14.0 60 3.1 14.0 2.0 1 1 0 1 1 1 0 Domain of unknown function (DUF4795) MMR_HSR1 PF01926.23 gi|212225100|ref|YP_002308336.1| - 1.6e-19 70.0 0.0 2.3e-19 69.5 0.0 1.2 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.18 gi|212225100|ref|YP_002308336.1| - 7.4e-13 48.3 0.0 6.8e-12 45.2 0.0 2.0 1 1 0 1 1 1 1 Ferrous iron transport protein B GTP_EFTU PF00009.27 gi|212225100|ref|YP_002308336.1| - 3e-07 30.2 0.0 1.9e-05 24.3 0.0 2.2 1 1 0 2 2 2 1 Elongation factor Tu GTP binding domain RsgA_GTPase PF03193.16 gi|212225100|ref|YP_002308336.1| - 1.2e-06 28.5 0.3 0.031 14.2 0.1 2.7 2 1 0 2 2 2 2 RsgA GTPase AIG1 PF04548.16 gi|212225100|ref|YP_002308336.1| - 0.00025 20.4 0.0 0.00036 19.9 0.0 1.2 1 0 0 1 1 1 1 AIG1 family Dynamin_N PF00350.23 gi|212225100|ref|YP_002308336.1| - 0.00095 19.3 0.0 0.0016 18.5 0.0 1.4 1 1 0 1 1 1 1 Dynamin family MMR_HSR1_Xtn PF16897.5 gi|212225100|ref|YP_002308336.1| - 0.0017 18.3 0.2 0.0035 17.4 0.0 1.5 2 0 0 2 2 2 1 C-terminal region of MMR_HSR1 domain Ras PF00071.22 gi|212225100|ref|YP_002308336.1| - 0.0042 16.7 0.1 0.46 10.1 0.0 2.3 2 0 0 2 2 2 1 Ras family Roc PF08477.13 gi|212225100|ref|YP_002308336.1| - 0.017 15.4 0.2 0.13 12.5 0.0 2.3 2 1 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase MobB PF03205.14 gi|212225100|ref|YP_002308336.1| - 0.022 14.7 0.0 0.039 13.9 0.0 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B MeaB PF03308.16 gi|212225100|ref|YP_002308336.1| - 0.025 13.5 0.2 0.37 9.7 0.1 2.1 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB PduV-EutP PF10662.9 gi|212225100|ref|YP_002308336.1| - 0.063 13.0 0.1 1.2 8.9 0.0 2.2 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation Ub-Mut7C PF14451.6 gi|212225100|ref|YP_002308336.1| - 0.15 12.0 0.1 0.45 10.4 0.0 1.9 2 0 0 2 2 2 0 Mut7-C ubiquitin MarR_2 PF12802.7 gi|212225101|ref|YP_002308337.1| - 5.1e-09 35.9 0.0 1e-08 34.9 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_Crp_2 PF13545.6 gi|212225101|ref|YP_002308337.1| - 1.3e-08 34.6 1.6 6.7e-08 32.4 0.2 2.2 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain AsnC_trans_reg PF01037.21 gi|212225101|ref|YP_002308337.1| - 1.6e-08 34.4 0.6 3.1e-08 33.4 0.6 1.5 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain HTH_24 PF13412.6 gi|212225101|ref|YP_002308337.1| - 1.8e-07 30.6 0.3 5.8e-07 29.0 0.1 2.0 2 0 0 2 2 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|212225101|ref|YP_002308337.1| - 4.7e-07 29.6 0.0 1.1e-06 28.4 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|212225101|ref|YP_002308337.1| - 1e-06 28.7 0.2 2.3e-06 27.6 0.2 1.7 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.12 gi|212225101|ref|YP_002308337.1| - 2.5e-06 27.3 1.8 3.9e-06 26.7 0.1 2.3 2 1 0 2 2 2 1 HTH domain HTH_10 PF04967.12 gi|212225101|ref|YP_002308337.1| - 3.4e-05 23.6 0.1 0.0034 17.2 0.1 2.6 2 0 0 2 2 2 1 HTH DNA binding domain MarR PF01047.22 gi|212225101|ref|YP_002308337.1| - 0.00012 21.9 0.1 0.00034 20.5 0.1 1.7 1 1 0 1 1 1 1 MarR family Sigma70_r4 PF04545.16 gi|212225101|ref|YP_002308337.1| - 0.00074 19.0 0.8 0.011 15.2 0.8 2.6 1 1 0 1 1 1 1 Sigma-70, region 4 HTH_34 PF13601.6 gi|212225101|ref|YP_002308337.1| - 0.0017 18.5 0.0 0.0034 17.5 0.0 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_28 PF13518.6 gi|212225101|ref|YP_002308337.1| - 0.0023 18.0 0.1 0.057 13.5 0.0 2.5 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_3 PF01381.22 gi|212225101|ref|YP_002308337.1| - 0.0023 17.9 0.4 0.0086 16.1 0.0 2.2 2 1 0 2 2 1 1 Helix-turn-helix ssDNA-exonuc_C PF10141.9 gi|212225101|ref|YP_002308337.1| - 0.003 17.3 0.0 0.007 16.0 0.0 1.5 2 0 0 2 2 2 1 Single-strand DNA-specific exonuclease, C terminal domain Rrf2 PF02082.20 gi|212225101|ref|YP_002308337.1| - 0.0035 17.7 0.2 0.01 16.2 0.0 1.8 2 0 0 2 2 2 1 Transcriptional regulator LexA_DNA_bind PF01726.16 gi|212225101|ref|YP_002308337.1| - 0.0045 16.7 0.7 0.011 15.5 0.3 1.9 2 1 0 2 2 1 1 LexA DNA binding domain TrmB PF01978.19 gi|212225101|ref|YP_002308337.1| - 0.0048 16.8 0.5 0.041 13.8 0.0 2.4 2 1 1 3 3 3 1 Sugar-specific transcriptional regulator TrmB HTH_36 PF13730.6 gi|212225101|ref|YP_002308337.1| - 0.0059 16.5 0.5 0.01 15.8 0.0 1.7 2 0 0 2 2 1 1 Helix-turn-helix domain HTH_IclR PF09339.10 gi|212225101|ref|YP_002308337.1| - 0.02 14.7 0.1 0.076 12.8 0.1 1.9 2 0 0 2 2 1 0 IclR helix-turn-helix domain RepL PF05732.11 gi|212225101|ref|YP_002308337.1| - 0.021 14.2 0.1 0.16 11.4 0.0 2.0 1 1 1 2 2 2 0 Firmicute plasmid replication protein (RepL) YdaS_antitoxin PF15943.5 gi|212225101|ref|YP_002308337.1| - 0.033 14.0 0.0 0.061 13.2 0.0 1.4 1 0 0 1 1 1 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_27 PF13463.6 gi|212225101|ref|YP_002308337.1| - 0.041 14.4 0.1 0.083 13.4 0.1 1.7 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_Mga PF08280.11 gi|212225101|ref|YP_002308337.1| - 0.057 13.5 0.3 0.057 13.5 0.3 2.5 3 1 0 3 3 3 0 M protein trans-acting positive regulator (MGA) HTH domain PDDEXK_10 PF07788.11 gi|212225101|ref|YP_002308337.1| - 0.057 13.4 2.1 0.095 12.7 0.3 2.3 2 1 0 2 2 2 0 PD-(D/E)XK nuclease superfamily RecO_C PF02565.15 gi|212225101|ref|YP_002308337.1| - 0.074 12.9 0.1 0.13 12.1 0.1 1.4 1 0 0 1 1 1 0 Recombination protein O C terminal UPF0122 PF04297.14 gi|212225101|ref|YP_002308337.1| - 0.078 13.2 1.6 1.6 9.0 0.0 2.8 2 2 0 2 2 2 0 Putative helix-turn-helix protein, YlxM / p13 like HTH_1 PF00126.27 gi|212225101|ref|YP_002308337.1| - 0.08 12.9 0.2 0.95 9.5 0.1 2.7 3 1 0 3 3 2 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_8 PF02954.19 gi|212225101|ref|YP_002308337.1| - 0.087 12.6 0.0 0.22 11.4 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory protein, Fis family Homeodomain PF00046.29 gi|212225101|ref|YP_002308337.1| - 0.088 12.7 1.2 0.13 12.1 0.2 1.9 2 0 0 2 2 1 0 Homeodomain Phage_CI_repr PF07022.13 gi|212225101|ref|YP_002308337.1| - 0.11 12.6 0.0 0.26 11.4 0.0 1.6 1 1 0 1 1 1 0 Bacteriophage CI repressor helix-turn-helix domain Sigma70_r4_2 PF08281.12 gi|212225101|ref|YP_002308337.1| - 0.17 11.6 0.9 2.1 8.1 0.0 2.7 3 0 0 3 3 2 0 Sigma-70, region 4 Mrr_N PF14338.6 gi|212225101|ref|YP_002308337.1| - 0.22 11.7 2.3 9.8 6.4 0.4 3.0 2 1 0 2 2 2 0 Mrr N-terminal domain Csm2_III-A PF03750.13 gi|212225101|ref|YP_002308337.1| - 0.27 12.1 2.6 4.7 8.1 0.1 2.2 1 1 1 2 2 2 0 Csm2 Type III-A CLP1_P PF16575.5 gi|212225102|ref|YP_002308338.1| - 1.7e-40 138.8 0.0 2.4e-40 138.4 0.0 1.2 1 0 0 1 1 1 1 mRNA cleavage and polyadenylation factor CLP1 P-loop CbiA PF01656.23 gi|212225102|ref|YP_002308338.1| - 0.0002 21.4 0.0 0.00027 21.0 0.0 1.6 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain SRP54 PF00448.22 gi|212225102|ref|YP_002308338.1| - 0.00046 19.9 0.2 0.12 11.9 0.1 2.2 2 0 0 2 2 2 2 SRP54-type protein, GTPase domain MobB PF03205.14 gi|212225102|ref|YP_002308338.1| - 0.0011 18.8 0.1 0.003 17.5 0.1 1.8 1 1 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B MeaB PF03308.16 gi|212225102|ref|YP_002308338.1| - 0.0024 16.9 0.1 0.0045 16.0 0.1 1.5 1 1 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB MMR_HSR1 PF01926.23 gi|212225102|ref|YP_002308338.1| - 0.0049 16.9 0.1 3.3 7.8 0.0 2.5 2 0 0 2 2 2 2 50S ribosome-binding GTPase MipZ PF09140.11 gi|212225102|ref|YP_002308338.1| - 0.0088 15.3 0.1 0.021 14.1 0.1 1.6 1 1 0 1 1 1 1 ATPase MipZ MutL PF13941.6 gi|212225102|ref|YP_002308338.1| - 0.03 12.9 0.0 0.046 12.3 0.0 1.2 1 0 0 1 1 1 0 MutL protein Zeta_toxin PF06414.12 gi|212225102|ref|YP_002308338.1| - 0.032 13.5 0.0 0.056 12.7 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin Arf PF00025.21 gi|212225102|ref|YP_002308338.1| - 0.053 13.0 0.1 0.11 11.9 0.1 1.5 1 0 0 1 1 1 0 ADP-ribosylation factor family PduV-EutP PF10662.9 gi|212225102|ref|YP_002308338.1| - 0.056 13.2 0.3 0.11 12.2 0.3 1.4 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation cobW PF02492.19 gi|212225102|ref|YP_002308338.1| - 0.056 13.0 0.1 0.72 9.4 0.1 2.0 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain Pox_A32 PF04665.12 gi|212225102|ref|YP_002308338.1| - 0.063 12.7 0.0 0.11 11.9 0.0 1.3 1 0 0 1 1 1 0 Poxvirus A32 protein T2SSE PF00437.20 gi|212225102|ref|YP_002308338.1| - 0.14 11.2 0.0 0.26 10.3 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein G-alpha PF00503.20 gi|212225102|ref|YP_002308338.1| - 0.14 11.3 0.0 0.25 10.5 0.0 1.3 1 0 0 1 1 1 0 G-protein alpha subunit AAA_31 PF13614.6 gi|212225102|ref|YP_002308338.1| - 0.16 11.8 0.2 0.33 10.8 0.2 1.4 1 0 0 1 1 1 0 AAA domain SRPRB PF09439.10 gi|212225102|ref|YP_002308338.1| - 0.18 11.2 0.0 0.32 10.4 0.0 1.3 1 0 0 1 1 1 0 Signal recognition particle receptor beta subunit AAA_24 PF13479.6 gi|212225102|ref|YP_002308338.1| - 0.23 11.2 0.0 0.32 10.7 0.0 1.2 1 0 0 1 1 1 0 AAA domain UbiA PF01040.18 gi|212225103|ref|YP_002308339.1| - 4e-45 154.1 16.4 5.3e-45 153.7 16.4 1.2 1 0 0 1 1 1 1 UbiA prenyltransferase family tRNA_anti-codon PF01336.25 gi|212225105|ref|YP_002308341.1| - 1e-08 35.0 1.9 2.3e-08 33.9 1.9 1.6 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain RPA_C PF08784.11 gi|212225105|ref|YP_002308341.1| - 0.0049 17.5 0.0 0.0087 16.7 0.0 1.3 1 0 0 1 1 1 1 Replication protein A C terminal TBPIP PF07106.13 gi|212225105|ref|YP_002308341.1| - 0.0092 15.9 0.7 0.017 15.0 0.2 1.7 2 0 0 2 2 2 1 TBPIP/Hop2 winged helix domain RMI2 PF16100.5 gi|212225105|ref|YP_002308341.1| - 0.019 14.8 0.0 0.032 14.0 0.0 1.4 1 0 0 1 1 1 0 RecQ-mediated genome instability protein 2 DUF2340 PF10209.9 gi|212225105|ref|YP_002308341.1| - 0.69 10.4 4.8 0.53 10.7 1.3 2.2 1 1 1 2 2 2 0 Uncharacterized conserved protein (DUF2340) DsrD PF08679.11 gi|212225105|ref|YP_002308341.1| - 2 8.7 4.6 3.4 8.0 1.7 2.6 2 0 0 2 2 2 0 Dissimilatory sulfite reductase D (DsrD) BOF PF04076.13 gi|212225106|ref|YP_002308342.1| - 0.00086 19.3 0.6 0.0022 18.0 0.6 1.6 1 1 0 1 1 1 1 Bacterial OB fold (BOF) protein RMI2 PF16100.5 gi|212225106|ref|YP_002308342.1| - 0.0048 16.7 0.0 0.0055 16.5 0.0 1.1 1 0 0 1 1 1 1 RecQ-mediated genome instability protein 2 tRNA_anti-codon PF01336.25 gi|212225106|ref|YP_002308342.1| - 0.09 12.8 1.7 0.41 10.7 1.5 2.1 1 1 0 1 1 1 0 OB-fold nucleic acid binding domain Rep_fac-A_3 PF08661.11 gi|212225106|ref|YP_002308342.1| - 0.15 12.4 0.0 0.19 12.1 0.0 1.3 1 0 0 1 1 1 0 Replication factor A protein 3 tRNA_anti-codon PF01336.25 gi|212225107|ref|YP_002308343.1| - 6.3e-15 54.9 0.1 1.1e-11 44.6 0.0 2.7 2 0 0 2 2 2 2 OB-fold nucleic acid binding domain Rep_fac-A_C PF08646.10 gi|212225107|ref|YP_002308343.1| - 3.7e-10 39.7 0.0 8.4e-10 38.6 0.0 1.6 2 0 0 2 2 2 1 Replication factor-A C terminal domain CDC24_OB3 PF17244.2 gi|212225107|ref|YP_002308343.1| - 6.6e-05 22.7 0.0 0.00022 21.0 0.0 1.7 2 0 0 2 2 2 1 Cell division control protein 24, OB domain 3 DUF2240 PF09999.9 gi|212225107|ref|YP_002308343.1| - 0.004 16.8 0.3 0.0084 15.7 0.3 1.4 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2240) DUF2396 PF09654.10 gi|212225107|ref|YP_002308343.1| - 0.009 16.1 0.2 0.029 14.5 0.1 1.8 2 0 0 2 2 2 1 Protein of unknown function (DUF2396) Cation_ATPase_N PF00690.26 gi|212225107|ref|YP_002308343.1| - 0.025 14.3 2.5 3.3 7.5 0.3 2.6 2 1 0 2 2 2 0 Cation transporter/ATPase, N-terminus DUF5521 PF17659.1 gi|212225107|ref|YP_002308343.1| - 0.055 11.3 0.0 0.073 10.9 0.0 1.1 1 0 0 1 1 1 0 Family of unknown function (DUF5521) Kri1 PF05178.12 gi|212225107|ref|YP_002308343.1| - 1.2 9.7 5.8 0.46 11.1 1.1 2.5 3 0 0 3 3 3 0 KRI1-like family SMC_ScpB PF04079.16 gi|212225108|ref|YP_002308344.1| - 3e-36 124.5 1.8 2e-35 121.8 0.5 1.9 1 1 1 2 2 2 1 Segregation and condensation complex subunit ScpB HTH_27 PF13463.6 gi|212225108|ref|YP_002308344.1| - 0.0014 19.1 0.5 0.12 12.9 0.1 2.6 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_5 PF01022.20 gi|212225108|ref|YP_002308344.1| - 0.0062 16.4 0.1 1.1 9.1 0.1 2.4 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family TrmB PF01978.19 gi|212225108|ref|YP_002308344.1| - 0.013 15.4 0.3 0.13 12.2 0.0 2.4 2 1 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.7 gi|212225108|ref|YP_002308344.1| - 0.014 15.5 0.1 0.62 10.2 0.0 2.4 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_24 PF13412.6 gi|212225108|ref|YP_002308344.1| - 0.098 12.2 0.1 8.5 6.0 0.1 2.4 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding MarR PF01047.22 gi|212225108|ref|YP_002308344.1| - 0.29 11.1 1.6 2.4 8.1 0.3 2.9 3 1 0 3 3 3 0 MarR family Fe_dep_repr_C PF02742.15 gi|212225109|ref|YP_002308345.1| - 4.6e-21 74.7 0.1 8.6e-21 73.8 0.1 1.5 1 0 0 1 1 1 1 Iron dependent repressor, metal binding and dimerisation domain Fe_dep_repress PF01325.19 gi|212225109|ref|YP_002308345.1| - 2.2e-18 66.2 0.8 3.7e-18 65.5 0.8 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain MarR PF01047.22 gi|212225109|ref|YP_002308345.1| - 5.2e-07 29.5 0.0 1.1e-06 28.4 0.0 1.5 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.7 gi|212225109|ref|YP_002308345.1| - 6e-07 29.3 0.0 1.6e-06 27.9 0.0 1.7 2 0 0 2 2 2 1 MarR family HTH_Crp_2 PF13545.6 gi|212225109|ref|YP_002308345.1| - 0.00021 21.2 0.0 0.00054 19.9 0.0 1.7 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain Rio2_N PF09202.11 gi|212225109|ref|YP_002308345.1| - 0.00025 21.2 1.1 0.052 13.8 0.3 2.1 2 0 0 2 2 2 1 Rio2, N-terminal TrmB PF01978.19 gi|212225109|ref|YP_002308345.1| - 0.00027 20.8 0.3 0.00045 20.0 0.3 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Rrf2 PF02082.20 gi|212225109|ref|YP_002308345.1| - 0.00028 21.2 0.1 0.00064 20.0 0.1 1.6 1 0 0 1 1 1 1 Transcriptional regulator HTH_29 PF13551.6 gi|212225109|ref|YP_002308345.1| - 0.00042 20.3 0.0 0.00098 19.1 0.0 1.6 2 0 0 2 2 1 1 Winged helix-turn helix HTH_27 PF13463.6 gi|212225109|ref|YP_002308345.1| - 0.00073 20.0 0.1 0.0013 19.2 0.1 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_5 PF01022.20 gi|212225109|ref|YP_002308345.1| - 0.0016 18.2 0.0 0.0043 16.9 0.0 1.8 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family GntR PF00392.21 gi|212225109|ref|YP_002308345.1| - 0.0031 17.1 0.0 0.0062 16.2 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family IF2_N PF04760.15 gi|212225109|ref|YP_002308345.1| - 0.005 16.6 0.1 0.021 14.7 0.1 2.0 2 0 0 2 2 2 1 Translation initiation factor IF-2, N-terminal region DUF505 PF04458.12 gi|212225109|ref|YP_002308345.1| - 0.0069 14.8 0.4 0.0088 14.5 0.4 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF505) LexA_DNA_bind PF01726.16 gi|212225109|ref|YP_002308345.1| - 0.0092 15.7 0.2 0.063 13.1 0.1 2.5 3 1 0 3 3 2 1 LexA DNA binding domain HTH_23 PF13384.6 gi|212225109|ref|YP_002308345.1| - 0.02 14.7 0.0 0.34 10.8 0.0 2.5 2 0 0 2 2 2 0 Homeodomain-like domain HTH_12 PF08461.10 gi|212225109|ref|YP_002308345.1| - 0.023 14.6 0.8 0.084 12.8 0.8 2.0 1 1 0 1 1 1 0 Ribonuclease R winged-helix domain TFIIE_alpha PF02002.17 gi|212225109|ref|YP_002308345.1| - 0.029 14.2 1.4 0.039 13.8 0.6 1.6 2 0 0 2 2 2 0 TFIIE alpha subunit DUF2250 PF10007.9 gi|212225109|ref|YP_002308345.1| - 0.033 14.3 1.6 0.049 13.7 1.6 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) B-block_TFIIIC PF04182.12 gi|212225109|ref|YP_002308345.1| - 0.039 14.1 0.1 0.077 13.2 0.1 1.5 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC HTH_36 PF13730.6 gi|212225109|ref|YP_002308345.1| - 0.05 13.6 0.0 0.11 12.5 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_24 PF13412.6 gi|212225109|ref|YP_002308345.1| - 0.055 13.0 0.0 0.12 11.9 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Mrr_N PF14338.6 gi|212225109|ref|YP_002308345.1| - 0.097 12.8 0.1 0.25 11.5 0.0 1.7 2 0 0 2 2 2 0 Mrr N-terminal domain HrcA_DNA-bdg PF03444.15 gi|212225109|ref|YP_002308345.1| - 0.1 12.3 0.5 0.29 10.8 0.2 1.9 1 1 1 2 2 2 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding HTH_28 PF13518.6 gi|212225109|ref|YP_002308345.1| - 0.15 12.2 0.0 0.3 11.2 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain Mnd1 PF03962.15 gi|212225109|ref|YP_002308345.1| - 0.2 12.0 1.6 0.56 10.5 0.2 2.2 2 0 0 2 2 2 0 Mnd1 HTH domain Xan_ur_permease PF00860.20 gi|212225110|ref|YP_002308346.1| - 1.8e-46 158.6 38.2 2.2e-46 158.3 38.2 1.1 1 0 0 1 1 1 1 Permease family Sulfate_transp PF00916.20 gi|212225110|ref|YP_002308346.1| - 0.0028 16.5 23.8 0.0095 14.7 23.8 1.9 1 1 0 1 1 1 1 Sulfate permease family ABC_tran PF00005.27 gi|212225111|ref|YP_002308347.1| - 3.4e-34 118.3 0.0 6e-34 117.5 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|212225111|ref|YP_002308347.1| - 7e-11 42.5 0.1 1.7e-05 24.8 0.0 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system Rad17 PF03215.15 gi|212225111|ref|YP_002308347.1| - 0.00013 22.0 0.0 0.00019 21.4 0.0 1.4 1 0 0 1 1 1 1 Rad17 P-loop domain AAA PF00004.29 gi|212225111|ref|YP_002308347.1| - 0.0069 16.8 0.6 0.048 14.1 0.6 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|212225111|ref|YP_002308347.1| - 0.0074 16.7 0.1 0.019 15.3 0.1 1.8 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|212225111|ref|YP_002308347.1| - 0.014 15.6 0.4 0.062 13.6 0.0 1.9 2 0 0 2 2 2 0 AAA domain SMC_N PF02463.19 gi|212225111|ref|YP_002308347.1| - 0.023 14.2 0.0 0.38 10.1 0.0 2.0 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain TniB PF05621.11 gi|212225111|ref|YP_002308347.1| - 0.032 13.6 0.0 2.2 7.7 0.1 2.1 2 0 0 2 2 2 0 Bacterial TniB protein RsgA_GTPase PF03193.16 gi|212225111|ref|YP_002308347.1| - 0.13 12.2 0.0 0.24 11.3 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase BPD_transp_1 PF00528.22 gi|212225112|ref|YP_002308348.1| - 5.2e-29 101.3 39.6 1.4e-17 64.1 14.2 3.3 4 1 0 4 4 4 2 Binding-protein-dependent transport system inner membrane component FeoB_C PF07664.12 gi|212225112|ref|YP_002308348.1| - 8.6 6.1 9.6 0.58 9.9 0.2 3.7 3 0 0 3 3 3 0 Ferrous iron transport protein B C terminus Peptidase_S58 PF03576.14 gi|212225113|ref|YP_002308349.1| - 1.9e-110 369.1 0.3 2.1e-110 368.9 0.3 1.0 1 0 0 1 1 1 1 Peptidase family S58 AP_endonuc_2 PF01261.24 gi|212225114|ref|YP_002308350.1| - 8.4e-19 67.8 0.1 1.2e-18 67.4 0.1 1.2 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel Amidohydro_1 PF01979.20 gi|212225114|ref|YP_002308350.1| - 0.005 16.2 0.4 0.019 14.3 0.0 2.0 1 1 0 2 2 2 1 Amidohydrolase family DUF2345 PF10106.9 gi|212225114|ref|YP_002308350.1| - 0.068 13.0 0.0 0.11 12.4 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2345) Phage_GP20 PF06810.11 gi|212225115|ref|YP_002308351.1| - 0.0028 17.5 6.8 0.0028 17.5 6.8 4.0 3 2 0 3 3 3 1 Phage minor structural protein GP20 UCH PF00443.29 gi|212225115|ref|YP_002308351.1| - 0.0079 15.7 1.7 0.17 11.4 1.7 2.4 1 1 0 1 1 1 1 Ubiquitin carboxyl-terminal hydrolase Baculo_PEP_C PF04513.12 gi|212225115|ref|YP_002308351.1| - 0.017 15.1 2.2 2.9 7.9 0.5 3.6 3 1 1 4 4 4 0 Baculovirus polyhedron envelope protein, PEP, C terminus V-ATPase_G_2 PF16999.5 gi|212225115|ref|YP_002308351.1| - 0.053 13.9 2.6 0.053 13.9 2.6 4.1 3 1 0 3 3 3 0 Vacuolar (H+)-ATPase G subunit HemX PF04375.14 gi|212225115|ref|YP_002308351.1| - 0.08 12.2 14.8 0.03 13.6 3.0 3.2 3 0 0 3 3 3 0 HemX, putative uroporphyrinogen-III C-methyltransferase Laminin_II PF06009.12 gi|212225115|ref|YP_002308351.1| - 0.091 12.8 29.9 0.065 13.2 2.9 4.0 2 1 0 3 3 3 0 Laminin Domain II T3SS_needle_E PF08988.10 gi|212225115|ref|YP_002308351.1| - 0.42 10.8 4.8 6.3 7.0 2.0 3.2 2 0 0 2 2 2 0 Type III secretion system, cytoplasmic E component of needle DUF948 PF06103.11 gi|212225115|ref|YP_002308351.1| - 0.64 10.3 11.4 0.43 10.9 0.2 4.2 3 2 0 3 3 3 0 Bacterial protein of unknown function (DUF948) CENP-F_leu_zip PF10473.9 gi|212225115|ref|YP_002308351.1| - 1.5 8.9 52.6 0.17 11.9 16.3 3.5 3 0 0 3 3 3 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 HSBP1 PF06825.12 gi|212225115|ref|YP_002308351.1| - 1.6 8.6 8.1 67 3.5 0.2 4.5 4 0 0 4 4 4 0 Heat shock factor binding protein 1 EcsC PF12787.7 gi|212225115|ref|YP_002308351.1| - 2.2 7.9 10.0 2.5 7.7 0.8 3.2 2 1 1 3 3 3 0 EcsC protein family Fib_alpha PF08702.10 gi|212225115|ref|YP_002308351.1| - 6.2 7.0 28.4 1.3 9.2 4.7 3.5 3 1 0 3 3 3 0 Fibrinogen alpha/beta chain family DUF373 PF04123.13 gi|212225116|ref|YP_002308352.1| - 2.3e-98 329.8 11.3 2.7e-98 329.5 11.3 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF373) Thiamine_BP PF01910.17 gi|212225117|ref|YP_002308353.1| - 1.2e-31 108.5 1.4 1.3e-31 108.3 1.4 1.0 1 0 0 1 1 1 1 Thiamine-binding protein Baculo_PP31 PF05311.11 gi|212225117|ref|YP_002308353.1| - 0.037 13.5 0.1 0.038 13.5 0.1 1.2 1 1 0 1 1 1 0 Baculovirus 33KDa late protein (PP31) HGTP_anticodon PF03129.20 gi|212225117|ref|YP_002308353.1| - 0.07 13.3 1.1 0.42 10.8 1.1 2.0 1 1 0 1 1 1 0 Anticodon binding domain AMMECR1 PF01871.17 gi|212225118|ref|YP_002308354.1| - 1.5e-53 180.8 0.0 1.8e-53 180.6 0.0 1.0 1 0 0 1 1 1 1 AMMECR1 Methyltr_RsmB-F PF01189.17 gi|212225119|ref|YP_002308355.1| - 1e-49 168.9 0.0 1.5e-49 168.4 0.0 1.2 1 0 0 1 1 1 1 16S rRNA methyltransferase RsmB/F NusB PF01029.18 gi|212225119|ref|YP_002308355.1| - 7.7e-19 68.3 0.6 1.4e-18 67.5 0.1 1.7 2 0 0 2 2 2 1 NusB family Methyltransf_31 PF13847.6 gi|212225119|ref|YP_002308355.1| - 3.1e-14 53.1 0.0 2.6e-13 50.0 0.0 2.2 2 0 0 2 2 2 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|212225119|ref|YP_002308355.1| - 3.6e-08 33.0 0.1 2.9e-07 30.1 0.0 2.2 1 1 1 2 2 2 1 ubiE/COQ5 methyltransferase family Methyltransf_25 PF13649.6 gi|212225119|ref|YP_002308355.1| - 4.6e-08 33.6 0.1 1.2e-06 29.1 0.0 3.1 2 1 1 3 3 3 1 Methyltransferase domain MTS PF05175.14 gi|212225119|ref|YP_002308355.1| - 2.1e-07 30.7 0.1 0.00014 21.5 0.0 3.1 2 1 0 2 2 2 1 Methyltransferase small domain PCMT PF01135.19 gi|212225119|ref|YP_002308355.1| - 3e-07 30.4 0.0 7.6e-07 29.1 0.0 1.6 2 0 0 2 2 2 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) FtsJ PF01728.19 gi|212225119|ref|YP_002308355.1| - 0.0003 20.9 0.0 0.0006 20.0 0.0 1.5 1 0 0 1 1 1 1 FtsJ-like methyltransferase Methyltransf_4 PF02390.17 gi|212225119|ref|YP_002308355.1| - 0.0042 16.6 0.0 0.0085 15.6 0.0 1.5 1 0 0 1 1 1 1 Putative methyltransferase Met_10 PF02475.16 gi|212225119|ref|YP_002308355.1| - 0.01 15.6 0.0 0.023 14.4 0.0 1.5 1 0 0 1 1 1 0 Met-10+ like-protein Methyltransf_11 PF08241.12 gi|212225119|ref|YP_002308355.1| - 0.015 16.0 0.0 0.082 13.6 0.0 2.3 2 0 0 2 2 1 0 Methyltransferase domain Methyltransf_12 PF08242.12 gi|212225119|ref|YP_002308355.1| - 0.026 15.2 0.1 0.26 12.0 0.0 2.6 2 1 0 2 2 1 0 Methyltransferase domain Fibrillarin PF01269.17 gi|212225119|ref|YP_002308355.1| - 0.03 13.5 0.0 0.073 12.2 0.0 1.6 1 0 0 1 1 1 0 Fibrillarin Methyltr_RsmF_N PF17125.5 gi|212225119|ref|YP_002308355.1| - 0.037 14.5 0.0 0.099 13.1 0.0 1.7 1 0 0 1 1 1 0 N-terminal domain of 16S rRNA methyltransferase RsmF # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Thermococcus_onnurineus_NA1_uid59043/NC_011529.faa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Thermococcus_onnurineus_NA1_uid59043/NC_011529.PFam32-A --tblout /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Thermococcus_onnurineus_NA1_uid59043/NC_011529.PFam32-A.tblout --cpu 20 /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Thermococcus_onnurineus_NA1_uid59043/NC_011529.faa # Current dir: /oak/stanford/groups/akundaje/marinovg/genomes # Date: Mon Mar 25 16:12:14 2019 # [ok]